195 316 32 53 chr12 400 495 -143785960 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 619 682 -143785773 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 747 816 -143785639 - L2 LINE L2 -216 3097 3021 1254 199 3 94 chr12 1384 1600 -143784855 - AluJo SINE Alu -8 304 127 1600 111 0 0 chr12 1600 1825 -143784630 + AluSg/x SINE Alu 85 309 -3 1254 199 3 94 chr12 1825 1939 -143784516 - AluJo SINE Alu -185 127 4 653 106 0 11 chr12 1941 2035 -143784420 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 3371 3790 -143782665 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 3793 4082 -143782373 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 4083 4216 -143782239 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 4224 4283 -143782172 + Alu SINE Alu 246 304 -7 900 292 30 28 chr12 4341 4841 -143781614 + L1M4 LINE L1 3526 4026 -2120 1228 166 0 10 chr12 4841 5034 -143781421 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 5071 5375 -143781080 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 5693 6259 -143780196 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 7650 7849 -143778606 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 7858 7896 -143778559 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 7898 8191 -143778264 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 8913 8984 -143777471 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 9304 9338 -143777117 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 10345 10447 -143776008 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 10448 10626 -143775829 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 10697 10942 -143775513 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 11707 11830 -143774625 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 12514 12700 -143773755 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 12896 12946 -143773509 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 13531 13699 -143772756 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 14055 14096 -143772359 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 15070 15361 -143771094 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 15385 15498 -143770957 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 15499 15647 -143770808 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 16573 16911 -143769544 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 16911 16989 -143769466 + GA-rich Low_complexity Low_complexity 1 80 0 632 313 55 9 chr12 17536 17767 -143768688 - MIR SINE MIR -21 241 3 324 256 0 23 chr12 17846 17932 -143768523 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 18203 18370 -143768085 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 18423 18608 -143767847 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 19777 20356 -143766099 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 20713 21118 -143765337 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 21437 22375 -143764080 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 22761 22881 -143763574 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 23006 23085 -143763370 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 23661 23717 -143762738 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 24080 24253 -143762202 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 24934 25116 -143761339 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 26452 26590 -143759865 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 28429 28611 -143757844 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 28619 28892 -143757563 - L1ME3 LINE L1 0 6162 5879 1912 135 0 0 chr12 28920 29187 -143757268 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 29187 29290 -143757165 - HAL1 LINE L1 -197 2310 2214 532 297 170 3 chr12 29291 29661 -143756794 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 29674 31143 -143755312 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 32397 32445 -143754010 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 32498 32606 -143753849 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 33430 33604 -143752851 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 34327 34431 -143752024 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 34421 34645 -143751810 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 34805 35010 -143751445 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 35034 35508 -143750947 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 36501 36723 -143749732 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 37019 37176 -143749279 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 37733 37824 -143748631 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 37827 37964 -143748491 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 37991 38144 -143748311 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 38298 38615 -143747840 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 38737 38796 -143747659 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 38808 39011 -143747444 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 39028 39132 -143747323 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 40856 40937 -143745518 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 41141 41216 -143745239 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 42648 42668 -143743787 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 44562 44615 -143741840 - MIR SINE MIR -63 145 87 207 282 14 42 chr12 49373 49444 -143737011 - L2 LINE L2 -8 3264 3196 751 285 130 12 chr12 50970 51293 -143735162 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -143734232 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -143733975 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -143731226 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -143731183 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -143731096 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -143730919 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -143729809 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -143729629 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -143728177 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -143726740 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -143725902 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -143725769 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -143724473 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -143724294 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -143723987 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -143723605 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -143723570 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -143723103 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -143722326 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -143722108 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -143721714 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -143721589 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -143721518 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -143720754 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -143720200 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -143718478 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -143718222 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -143717737 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -143717004 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -143716063 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -143715360 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -143714887 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -143712971 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -143711989 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -143711212 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -143710911 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -143709165 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -143708779 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -143708722 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -143708375 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -143707713 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -143707239 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -143707098 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -143706749 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -143706561 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -143706350 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -143705821 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -143704595 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -143704373 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -143704155 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -143703567 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -143703268 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -143702467 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -143702191 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -143701997 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -143701758 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -143700866 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -143700466 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -143700020 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -143698705 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -143698391 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -143697866 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -143697617 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -143697309 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -143697192 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -143696745 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -143696581 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -143695048 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -143693710 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -143692699 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -143692079 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -143691334 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -143690418 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -143690310 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -143690164 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -143689450 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -143689384 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -143687915 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -143687839 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -143687628 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -143687564 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -143687323 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -143687112 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -143686735 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -143686306 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -143686172 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -143684244 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -143683814 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -143683490 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -143683067 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -143682218 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -143682059 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -143681758 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -143681388 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -143681051 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -143680782 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -143680686 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -143680267 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -143678296 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -143677615 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -143676746 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -143676314 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -143676007 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -143675835 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -143675522 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -143675301 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -143675022 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -143674993 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -143674977 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -143674167 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -143673951 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -143673530 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -143673237 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -143672919 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -143672762 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -143672582 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -143672464 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -143672097 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -143670840 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -143669328 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -143667353 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -143667259 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -143666809 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -143666561 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -143665122 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -143665040 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -143664537 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -143664485 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -143663847 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -143663738 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -143663435 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -143663197 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -143663087 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -143662459 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -143661949 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -143661579 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -143661371 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -143660994 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -143660805 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -143660591 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -143660304 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -143659999 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -143656443 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -143656177 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -143653693 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -143653353 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -143652664 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -143652487 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -143652416 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -143652331 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -143651865 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -143651808 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -143651062 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -143650313 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -143650105 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -143649845 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -143649124 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -143645246 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -143643172 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -143642857 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -143642568 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -143642277 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -143641351 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -143640139 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -143638842 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -143638208 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -143638138 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -143637743 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -143637416 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -143636866 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -143636581 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -143636226 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -143635372 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -143634343 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -143633617 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -143632987 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -143632215 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -143631641 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -143630881 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -143630452 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -143629397 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -143629092 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -143628797 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -143628496 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -143628381 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -143628121 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -143628010 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -143627705 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -143627135 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -143626680 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -143626041 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -143625812 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -143625555 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -143624370 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -143624075 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -143622971 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -143622494 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -143621689 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -143621229 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -143620888 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -143620004 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -143618414 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -143618367 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -143618072 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -143617279 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -143616925 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -143615817 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -143615638 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -143615322 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -143614434 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -143613564 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -143613318 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -143612565 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -143612168 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -143610903 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -143610766 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -143610617 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -143609353 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -143609275 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -143608503 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -143608332 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -143607894 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -143607656 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -143605908 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -143605146 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -143603889 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -143603383 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -143603179 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -143602547 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -143602011 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -143601148 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -143599674 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -143597653 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -143597372 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -143597078 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -143596975 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -143596607 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -143595125 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -143593822 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -143593661 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -143592662 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -143591835 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -143591621 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -143591256 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -143590758 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -143589543 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -143589090 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -143588442 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -143588302 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -143588122 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -143587651 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -143587470 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -143587255 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -143587134 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -143585329 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -143585050 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -143583598 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -143581651 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -143577904 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -143576816 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -143576038 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -143575851 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -143575717 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -143574935 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -143574708 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -143574596 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -143574500 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -143572745 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -143572453 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -143572319 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -143572252 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -143571694 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -143571559 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -143571260 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -143571091 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -143570886 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -143569366 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -143567413 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -143567300 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -143565762 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -143565630 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -143564687 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -143564457 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -143564353 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -143564075 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -143561951 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -143561487 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -143561118 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -143560071 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -143558828 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -143558292 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -143557451 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -143557330 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -143556852 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -143556702 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -143556171 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -143556003 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -143555630 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -143555532 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -143554543 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -143553547 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -143552699 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -143552524 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -143552212 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -143550415 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -143549966 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -143549521 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -143549439 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -143548447 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -143547197 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -143546565 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -143546418 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -143546345 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -143545692 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -143544069 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -143543867 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -143543495 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -143543246 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -143541550 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -143538942 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -143538600 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -143538087 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -143537757 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -143537312 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -143533823 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -143533664 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -143533157 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -143532601 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -143530361 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -143529840 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -143528773 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -143527136 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -143525512 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -143525174 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -143524151 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -143523889 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -143521945 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -143521565 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -143521219 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -143521102 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -143519571 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -143519454 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -143517461 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -143516941 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -143516264 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -143515534 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -143515362 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -143514705 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -143514450 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -143514345 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -143514301 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -143513896 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -143513784 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -143513168 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -143513101 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -143512722 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -143511630 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -143511333 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -143511128 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -143510637 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -143510334 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -143510201 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -143509908 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -143509877 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -143509694 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -143509310 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -143509001 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -143507742 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -143507612 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -143505130 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -143504859 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -143504364 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -143504042 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143503940 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143503818 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143503533 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143501175 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143501047 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143500939 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143500883 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143500709 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143500621 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143500342 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143499733 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143496385 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143496273 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143495285 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143494615 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143494089 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143493618 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143493063 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143492520 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143492217 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143490413 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143490295 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143489521 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143489003 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143488689 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143487324 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143486858 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143486628 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143486152 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143485501 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143485227 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143485054 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143482987 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143482372 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143481943 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143481700 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143480900 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143480582 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143480196 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143479942 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143479618 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143479497 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143478801 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143477192 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143476430 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143473743 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143471787 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143468950 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143468707 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143467136 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143466811 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143466639 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143466301 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143466106 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143465917 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143464466 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143463831 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143462548 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143462248 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143461519 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143461120 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143460626 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143459697 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143459197 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143458136 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143452373 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143452043 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143451570 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143451498 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143450738 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143449762 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143449276 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143447577 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143446878 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143446786 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143446515 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143445754 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143445386 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143444691 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143444560 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143443991 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143443492 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143443079 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143442659 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143442617 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143442486 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143441833 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143441542 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143440965 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143440745 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143440453 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143439905 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143439626 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143439014 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143436563 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143436255 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143435824 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143435516 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143433639 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143432780 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143431726 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143431142 + AluSx SINE Alu 1 304 -8 1885 154 33 3 chr12 355821 356120 -143430335 + AluSx SINE Alu 3 310 -2 2158 130 0 0 chr12 356150 356450 -143430005 + AluSx SINE Alu 1 300 -12 191 273 136 57 chr12 356455 356631 -143429824 - L2 LINE L2 -844 2470 2281 2529 60 0 13 chr12 356998 357313 -143429142 + AluY SINE Alu 1 311 0 183 252 65 56 chr12 357318 357425 -143429030 - L2 LINE L2 -1386 1928 1821 23 54 0 0 chr12 357796 357833 -143428622 + AT_rich Low_complexity Low_complexity 1 37 0 2119 130 7 0 chr12 357846 358145 -143428310 + AluSx SINE Alu 1 301 -11 1741 183 0 10 chr12 358149 358439 -143428016 + AluJo SINE Alu 1 287 -25 755 221 6 0 chr12 358474 358632 -143427823 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143426628 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143425950 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 91 0 232 chr12 361700 361799 -143424656 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143424499 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143424050 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143423574 + AT_rich Low_complexity Low_complexity 1 21 0 2030 156 0 0 chr12 363555 363879 -143422576 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143421509 + AT_rich Low_complexity Low_complexity 1 26 0 332 277 80 15 chr12 365493 365630 -143420825 + L1MEd LINE L1 141 286 -5919 810 167 19 6 chr12 365765 365921 -143420534 + Charlie1b DNA MER1_type 54 211 -312 240 254 35 35 chr12 366026 366140 -143420315 + L1MEd LINE L1 1027 1140 -5065 2466 84 0 3 chr12 366178 366487 -143419968 + AluSq SINE Alu 1 308 -5 2035 139 10 0 chr12 366495 366796 -143419659 + AluJb SINE Alu 1 304 -8 1744 135 24 0 chr12 367016 367268 -143419187 + AluSx SINE Alu 40 297 -15 2003 135 154 5 chr12 367371 367742 -143418713 + MSTA LTR MaLR 1 426 -2 2311 101 10 0 chr12 368065 368361 -143418094 - AluSq SINE Alu -14 299 1 242 164 0 33 chr12 368384 368445 -143418010 - L1MC5 LINE L1 -50 7911 7853 2296 191 68 37 chr12 368499 369044 -143417411 + MER68 LTR ERV1 1 562 0 2332 78 7 0 chr12 369319 369614 -143416841 + AluSp SINE Alu 4 300 -13 853 229 97 64 chr12 370174 370294 -143416161 + MLT1F LTR MaLR 10 125 -417 1981 149 0 10 chr12 370294 370596 -143415859 - AluJb SINE Alu -13 299 1 853 229 97 64 chr12 370596 370832 -143415623 + MLT1F LTR MaLR 125 439 -103 2369 95 0 3 chr12 370832 371138 -143415317 + AluSg SINE Alu 1 305 -5 853 229 97 64 chr12 371138 371239 -143415216 + MLT1F LTR MaLR 439 535 -7 809 215 44 6 chr12 372014 372038 -143414417 + L1MEd LINE L1 2156 2178 -4037 2035 160 3 0 chr12 372038 372345 -143414110 + AluSg SINE Alu 1 308 -2 809 215 44 6 chr12 372345 372603 -143413852 + L1MEd LINE L1 2178 2406 -3809 2244 100 0 7 chr12 372879 373180 -143413275 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143413243 + AT_rich Low_complexity Low_complexity 1 23 0 35885 80 12 8 chr12 373215 379337 -143407118 + L1PA6 LINE L1 2 6152 -2 2219 114 3 0 chr12 379440 379738 -143406717 - AluSq SINE Alu -14 299 1 2467 68 0 0 chr12 379749 380042 -143406413 - AluSg1 SINE Alu -12 297 5 438 231 0 0 chr12 380163 380241 -143406214 - AluJ/FLAM SINE Alu -234 78 1 2219 95 10 0 chr12 380266 380561 -143405894 + AluSp SINE Alu 1 298 -15 2150 107 31 0 chr12 380573 380863 -143405592 + AluSx SINE Alu 1 299 -13 2429 59 0 0 chr12 381587 381907 -143404548 - L1PA7 LINE L1 -111 6043 5724 1016 118 0 0 chr12 382103 382238 -143404217 + AluSq/x SINE Alu 1 135 -177 2442 97 0 0 chr12 382238 382547 -143403908 + AluSx SINE Alu 1 309 -3 1530 168 60 3 chr12 383479 383764 -143402691 + AluJb SINE Alu 1 301 -11 2304 95 0 3 chr12 384057 384353 -143402102 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384654 384707 -143401748 + AT_rich Low_complexity Low_complexity 1 53 0 2333 78 10 0 chr12 384903 385196 -143401259 + AluY SINE Alu 1 296 -15 582 244 101 32 chr12 385692 385909 -143400546 - MIR SINE MIR 0 262 31 1641 155 18 14 chr12 387415 387692 -143398763 + AluJb SINE Alu 1 278 -34 1188 189 5 5 chr12 387720 387937 -143398518 + AluJo SINE Alu 85 301 -11 2500 85 0 0 chr12 387964 388271 -143398184 + AluSg SINE Alu 1 307 -3 269 333 93 0 chr12 388318 388447 -143398008 + MLT1L LTR MaLR 343 483 -132 2019 143 3 16 chr12 389107 389421 -143397034 + AluSg SINE Alu 1 310 0 582 206 56 103 chr12 389546 389779 -143396676 + L1MC4a LINE L1 6526 6747 -1061 191 270 16 48 chr12 389798 389861 -143396594 - L2 LINE L2 -799 2515 2455 1668 172 35 0 chr12 389886 390171 -143396284 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390185 390293 -143396162 + GA-rich Low_complexity Low_complexity 1 109 0 2028 134 10 3 chr12 390410 390700 -143395755 + AluSx SINE Alu 1 292 -20 404 331 165 36 chr12 390704 391463 -143394992 - L2 LINE L2 -1073 2241 1385 2369 85 0 0 chr12 391615 391910 -143394545 - AluY SINE Alu -16 295 1 479 199 38 61 chr12 393231 393362 -143393093 + FLAM_A SINE Alu 1 128 -5 3490 197 73 36 chr12 393624 394606 -143391849 + L1ME1 LINE L1 4559 5504 -662 2205 110 0 17 chr12 394606 394907 -143391548 + AluSx SINE Alu 1 296 -16 3490 197 73 36 chr12 394907 394920 -143391535 + L1ME1 LINE L1 5504 5515 -651 2382 72 16 0 chr12 394920 395225 -143391230 + AluY SINE Alu 1 310 -1 3490 197 73 36 chr12 395225 395477 -143390978 + L1ME1 LINE L1 5515 5756 -410 1926 150 0 3 chr12 395477 395770 -143390685 - AluJb SINE Alu -20 292 1 3490 197 73 36 chr12 395770 396081 -143390374 + L1ME1 LINE L1 5756 6161 -5 244 195 11 46 chr12 396845 396932 -143389523 + A-rich Low_complexity Low_complexity 4 87 0 1721 145 76 0 chr12 397244 397561 -143388894 + MER7A DNA MER2_type 1 339 -7 1534 153 16 70 chr12 397685 397831 -143388624 + AluJo SINE Alu 1 123 -189 1852 160 0 17 chr12 397831 398131 -143388324 + AluSx SINE Alu 1 295 -17 1534 153 16 70 chr12 398131 398297 -143388158 + AluJo SINE Alu 123 296 -16 1658 185 58 6 chr12 398300 398762 -143387693 + L1MB4 LINE L1 5594 6132 -48 497 197 50 131 chr12 398804 398866 -143387589 + MIR SINE MIR 29 94 -168 2068 109 13 3 chr12 398866 399168 -143387287 + AluSx SINE Alu 1 305 -7 497 197 50 131 chr12 399168 399303 -143387152 + MIR SINE MIR 94 210 -52 1023 264 96 84 chr12 399713 400201 -143386254 - L2 LINE L2 -5 3308 2815 2202 123 0 7 chr12 400527 400836 -143385619 + AluSx SINE Alu 1 307 -5 32548 57 10 3 chr12 401029 407135 -143379320 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407458 407616 -143378839 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407651 408392 -143378063 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408400 408428 -143378027 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408497 408692 -143377763 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408692 408982 -143377473 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408982 409026 -143377429 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409093 409393 -143377062 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409762 409963 -143376492 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410334 410388 -143376067 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410403 410694 -143375761 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410850 411149 -143375306 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411188 411220 -143375235 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411220 411404 -143375051 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411404 411711 -143374744 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411711 411829 -143374626 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411829 411858 -143374597 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412234 412520 -143373935 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412567 412785 -143373670 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412785 412895 -143373560 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412919 412968 -143373487 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413062 413367 -143373088 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413630 413934 -143372521 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414059 414089 -143372366 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414172 414332 -143372123 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414631 414935 -143371520 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415325 415618 -143370837 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415797 415885 -143370570 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416565 416982 -143369473 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416983 417115 -143369340 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417123 417183 -143369272 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418390 418550 -143367905 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419966 420008 -143366447 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420480 420544 -143365911 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420898 421154 -143365301 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421154 421179 -143365276 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421179 421217 -143365238 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421221 421541 -143364914 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421589 421887 -143364568 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422823 422879 -143363576 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422879 423175 -143363280 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423175 423523 -143362932 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423523 423820 -143362635 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423820 423955 -143362500 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423955 424249 -143362206 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424249 424967 -143361488 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425240 425422 -143361033 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425488 425806 -143360649 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425969 426008 -143360447 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426029 426341 -143360114 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426357 426491 -143359964 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426527 426837 -143359618 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426853 427032 -143359423 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427335 427524 -143358931 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427524 427606 -143358849 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427627 427683 -143358772 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427870 428071 -143358384 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428071 428363 -143358092 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428363 428861 -143357594 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428861 428985 -143357470 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428985 429176 -143357279 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429176 429469 -143356986 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429469 429593 -143356862 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429593 429887 -143356568 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429887 431338 -143355117 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432408 432480 -143353975 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433112 433425 -143353030 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433703 433906 -143352549 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433906 434209 -143352246 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434220 434396 -143352059 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434456 434753 -143351702 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434904 435018 -143351437 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435139 435439 -143351016 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435497 435880 -143350575 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436190 436334 -143350121 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436334 436616 -143349839 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436616 437082 -143349373 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437082 437365 -143349090 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437365 437443 -143349012 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437443 437570 -143348885 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437570 438036 -143348419 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438200 438504 -143347951 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438983 439079 -143347376 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439341 439653 -143346802 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439941 440098 -143346357 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440131 440434 -143346021 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440679 440965 -143345490 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440968 441263 -143345192 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441363 441471 -143344984 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441594 441897 -143344558 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441901 442035 -143344420 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442875 443104 -143343351 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443358 443655 -143342800 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443657 443956 -143342499 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444044 444345 -143342110 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444508 444794 -143341661 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445473 445512 -143340943 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445574 445625 -143340830 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445691 445857 -143340598 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445860 446025 -143340430 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446048 446217 -143340238 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446217 446523 -143339932 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446523 446658 -143339797 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446679 446718 -143339737 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446718 446796 -143339659 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446795 446834 -143339621 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446796 446834 -143339621 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446834 447083 -143339372 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447083 447244 -143339211 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447244 447566 -143338889 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447566 447701 -143338754 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448050 448330 -143338125 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448454 448752 -143337703 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449099 449135 -143337320 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449136 449416 -143337039 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449463 449755 -143336700 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452204 452615 -143333840 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452618 452853 -143333602 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452853 453054 -143333401 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453054 453379 -143333076 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453379 453423 -143333032 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453423 453736 -143332719 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453736 453921 -143332534 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453921 454208 -143332247 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454208 454307 -143332148 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454309 454354 -143332101 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454354 454568 -143331887 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454568 454840 -143331615 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454856 455170 -143331285 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455422 455637 -143330818 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455697 455783 -143330672 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455783 456102 -143330353 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456102 456927 -143329528 - HERV16 LTR ERVL -2510 2486 1735 2079 88 0 4 chr12 456927 457201 -143329254 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457201 457368 -143329087 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457415 457712 -143328743 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457767 458131 -143328324 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458170 458479 -143327976 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458943 459026 -143327429 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459114 459308 -143327147 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459403 459694 -143326761 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459707 459738 -143326717 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459738 459861 -143326594 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459914 460232 -143326223 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460235 460395 -143326060 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460736 461025 -143325430 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461149 461469 -143324986 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462698 462976 -143323479 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463526 463556 -143322899 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463530 463606 -143322849 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464157 464284 -143322171 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464284 464591 -143321864 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464591 464775 -143321680 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464798 464893 -143321562 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465697 465979 -143320476 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466049 466337 -143320118 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466340 466463 -143319992 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467497 467805 -143318650 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468684 468705 -143317750 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468726 469035 -143317420 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469036 469177 -143317278 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469177 469471 -143316984 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469471 469739 -143316716 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469739 470185 -143316270 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472536 472573 -143313882 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472716 472877 -143313578 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472877 472901 -143313554 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472901 473020 -143313435 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473330 473624 -143312831 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473804 473887 -143312568 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474029 474180 -143312275 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474192 474936 -143311519 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474942 475019 -143311436 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475019 475313 -143311142 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475313 475329 -143311126 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475513 475819 -143310636 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475829 476136 -143310319 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476615 476889 -143309566 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476928 476956 -143309499 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477492 477737 -143308718 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477832 477980 -143308475 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477980 478284 -143308171 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478284 478560 -143307895 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478781 478874 -143307581 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479646 479943 -143306512 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480114 480205 -143306250 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480859 480993 -143305462 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481777 481907 -143304548 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481954 482093 -143304362 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482093 482393 -143304062 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482393 482493 -143303962 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482744 482858 -143303597 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484041 484336 -143302119 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486054 486271 -143300184 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486337 486434 -143300021 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488542 488699 -143297756 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488987 489069 -143297386 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489093 489259 -143297196 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489844 489876 -143296579 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489921 489960 -143296495 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490216 490347 -143296108 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490510 490538 -143295917 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491250 491312 -143295143 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491781 491886 -143294569 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491916 492093 -143294362 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493387 493810 -143292645 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494287 494582 -143291873 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495232 495284 -143291171 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496688 496717 -143289738 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496834 496918 -143289537 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496950 497022 -143289433 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497031 497052 -143289403 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497059 497146 -143289309 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497216 497521 -143288934 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499089 499302 -143287153 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499741 499764 -143286691 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499764 499891 -143286564 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500675 500966 -143285489 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501046 501364 -143285091 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501364 501650 -143284805 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501654 501689 -143284766 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501706 501748 -143284707 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501782 501915 -143284540 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502225 502386 -143284069 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502386 502676 -143283779 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502676 502815 -143283640 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502916 503197 -143283258 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503631 503831 -143282624 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504477 504617 -143281838 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504617 504907 -143281548 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504907 505083 -143281372 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505994 506238 -143280217 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506241 506563 -143279892 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506826 506979 -143279476 - MER117 DNA MER1_type -35 162 8 198 328 0 16 chr12 506979 507040 -143279415 - MIR SINE MIR -56 152 93 1860 174 0 10 chr12 507908 508212 -143278243 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509148 509282 -143277173 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509506 509621 -143276834 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509852 510154 -143276301 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510220 510404 -143276051 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512289 512404 -143274051 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512654 512824 -143273631 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512837 513137 -143273318 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513354 513635 -143272820 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513652 513784 -143272671 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514367 514539 -143271916 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514732 514754 -143271701 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515531 515593 -143270862 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515594 515676 -143270779 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515702 516142 -143270313 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516142 516446 -143270009 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516446 517371 -143269084 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517371 517681 -143268774 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517692 517906 -143268549 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517909 517990 -143268465 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518006 518043 -143268412 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518043 518544 -143267911 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518548 518787 -143267668 + AluJo SINE Alu 85 312 0 9985 210 49 18 chr12 518803 518905 -143267550 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518905 519281 -143267174 + L1PA8 LINE L1 5791 6171 -1 9985 210 49 18 chr12 519281 520394 -143266061 + L1MCa LINE L1 2294 3371 -3242 1844 149 35 3 chr12 520394 520682 -143265773 + AluJb SINE Alu 1 297 -15 9985 210 49 18 chr12 520682 521271 -143265184 + L1MCa LINE L1 3371 3940 -2673 2070 152 10 0 chr12 521271 521568 -143264887 - AluJb SINE Alu -12 300 1 9985 210 49 18 chr12 521568 521713 -143264742 + L1MCa LINE L1 3940 4079 -2534 2224 113 7 13 chr12 521713 522022 -143264433 + AluSg SINE Alu 1 307 -3 9985 210 49 18 chr12 522022 523480 -143262975 + L1MCa LINE L1 4079 5894 -719 2248 103 0 57 chr12 523929 524260 -143262195 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143261259 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143260797 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143260188 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143259895 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143259635 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143259380 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143259071 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143258829 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143256755 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143256586 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143256209 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143255345 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143254909 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143254681 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143254677 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143253459 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143253005 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143252691 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143252383 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143252212 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143251883 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143251781 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143251322 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143250138 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143249578 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143249339 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143247991 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143245499 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143245305 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143244964 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143244642 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143244061 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143243184 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143243039 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143242733 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143242429 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143242385 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143242179 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143241881 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143241751 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143241429 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143241333 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143241204 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143241070 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143240763 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143240396 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143240266 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143239588 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143238831 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143238661 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143238503 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143238226 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143238026 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143236132 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143235112 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143234273 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143233961 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143233922 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143233216 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143232846 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143232250 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143232040 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143231517 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143230675 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143230234 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143230210 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143229845 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143229817 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143229698 - AluJb SINE Alu -147 165 1 327 257 50 8 chr12 557606 557724 -143228731 + MIR SINE MIR 2 128 -134 22 0 0 0 chr12 557733 557755 -143228700 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143228536 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143227227 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143226183 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143225690 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143225260 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143224986 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143224820 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143224128 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143223165 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143222638 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143220423 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143220280 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143220060 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143219832 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143219369 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143219272 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143218738 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143218340 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143218104 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143217902 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143217295 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143217019 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143216992 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143216194 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143215884 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143215749 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143215570 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143215057 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143212355 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143211400 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143211219 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143211074 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143210822 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143210500 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143210134 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143209643 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143209390 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143209235 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143208205 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143208154 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143207680 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143207564 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143206617 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143204799 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143204030 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143203362 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143202627 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143202318 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143202240 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143201928 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143201363 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143201054 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143200896 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143200675 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143200042 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143198119 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143197480 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143196616 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143195921 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143193412 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143192259 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143190760 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143190440 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143189591 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143189512 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143189107 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143188902 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143188236 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143186750 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143184328 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143184112 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143183809 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143183527 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143182896 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143182783 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143182364 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143180479 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143179730 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143179687 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143179604 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143179484 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143179417 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143179279 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143179245 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143178778 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143178518 - AluJo SINE Alu -52 260 1 263 303 53 0 chr12 607938 608014 -143178441 - MIR SINE MIR -171 91 12 915 210 119 113 chr12 608725 608802 -143177653 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143177604 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 915 210 119 113 chr12 608851 609235 -143177220 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143176840 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143176536 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143176157 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143175924 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143174965 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143174887 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143174709 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143174469 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143174278 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143174058 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143173998 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143173372 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143173203 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143172782 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143172732 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143172429 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143172113 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143171686 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143171514 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143171168 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143171042 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143170505 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143169323 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143169008 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143168617 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143168056 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143167812 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143167666 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143167428 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143167045 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143164991 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143164539 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143164116 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143163537 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143163453 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143163410 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143162899 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143162839 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143162750 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143162608 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143161763 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143161486 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143160994 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143160696 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143160313 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143159868 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143158547 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143158257 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143158242 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143157877 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143157569 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143156680 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143156557 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143156397 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143155994 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143155681 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143155355 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143154428 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143154121 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143153599 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143153297 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143153016 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143152595 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143152360 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143152244 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143152044 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143151903 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143151689 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143151553 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143151234 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143151189 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143151087 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143150446 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143150145 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143150028 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143149996 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143149874 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143148650 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143148312 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143147458 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143147294 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143147177 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143146228 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143145622 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143145545 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143144960 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143144125 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143143636 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143143321 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143143137 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143141655 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143140042 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143138868 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143138693 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143137300 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143136924 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143136328 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143135725 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143135412 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143135118 + AluSg1 SINE Alu 1 297 -12 2409 67 40 3 chr12 651337 651636 -143134819 + AluY SINE Alu 1 310 -1 25 0 0 0 chr12 651978 652003 -143134452 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652948 653262 -143133193 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653647 653711 -143132744 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653723 654020 -143132435 + AluSx SINE Alu 1 297 -15 2322 103 0 0 chr12 654023 654323 -143132132 + AluSx SINE Alu 1 300 -12 356 326 96 53 chr12 654375 654788 -143131667 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655817 656011 -143130444 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656011 656296 -143130159 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656296 656374 -143130081 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656659 656753 -143129702 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 657001 657152 -143129303 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657744 658377 -143128078 + MER41B LTR ERV1 1 633 -2 654 194 32 67 chr12 658391 658581 -143127874 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658705 658809 -143127646 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658809 659100 -143127355 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659100 659126 -143127329 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659126 659244 -143127211 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659538 659880 -143126575 - AluSx SINE Alu 0 312 1 2333 61 3 10 chr12 660547 660864 -143125591 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661614 661747 -143124708 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662419 662714 -143123741 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662737 663027 -143123428 + AluSx SINE Alu 1 294 -18 1968 112 42 3 chr12 663477 663762 -143122693 - AluSg SINE Alu -14 296 1 619 204 0 53 chr12 664114 664246 -143122209 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664257 664554 -143121901 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664583 664996 -143121459 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664996 665296 -143121159 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665298 665644 -143120811 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665644 666272 -143120183 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666272 666563 -143119892 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666563 666874 -143119581 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667618 667918 -143118537 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668111 668228 -143118227 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668475 668675 -143117780 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669455 669557 -143116898 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669721 670001 -143116454 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670762 671066 -143115389 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671239 671368 -143115087 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671461 671730 -143114725 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672056 672228 -143114227 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672724 672807 -143113648 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673097 673230 -143113225 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673362 673417 -143113038 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673425 673549 -143112906 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673557 673652 -143112803 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674133 674245 -143112210 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674416 674535 -143111920 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674683 674856 -143111599 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676909 677066 -143109389 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677090 677210 -143109245 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677285 677581 -143108874 - AluSq SINE Alu -21 292 1 214 392 75 22 chr12 677947 678174 -143108281 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678174 678238 -143108217 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678245 678549 -143107906 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678692 678755 -143107700 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678827 679277 -143107178 - L1ME4a LINE L1 -1 6120 5628 1736 139 9 73 chr12 679283 679599 -143106856 - AluSx SINE Alu -15 297 2 735 120 9 0 chr12 679620 679728 -143106727 + AluSg SINE Alu 2 110 -200 3710 176 33 65 chr12 679918 680779 -143105676 - L1MB4 LINE L1 -41 6139 5252 221 0 35 0 chr12 680779 680808 -143105647 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3710 176 33 65 chr12 680808 680974 -143105481 - L1MB4 LINE L1 -928 5252 5082 2392 76 3 7 chr12 680974 681276 -143105179 - AluSg SINE Alu -9 301 1 3710 176 33 65 chr12 681276 681529 -143104926 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 681786 681809 -143104646 + AT_rich Low_complexity Low_complexity 1 23 0 2392 97 7 0 chr12 681874 682184 -143104271 - AluSx SINE Alu 0 312 1 3528 25 7 0 chr12 682203 682611 -143103844 - L1PA5 LINE L1 -1 6153 5743 359 288 55 20 chr12 682749 682895 -143103560 + LTR16C LTR ERVL 247 397 -94 1470 150 0 67 chr12 682929 683037 -143103418 - AluJb SINE Alu -76 236 122 2395 69 3 0 chr12 683037 683325 -143103130 - AluY SINE Alu -22 289 1 1470 150 0 67 chr12 683325 683469 -143102986 - AluJb SINE Alu -190 122 1 570 200 50 0 chr12 683800 683920 -143102535 - L1MB7 LINE L1 -43 6141 6016 1192 201 42 113 chr12 683924 684333 -143102122 - MER21B LTR ERV1 -466 397 18 2363 100 0 19 chr12 684333 684644 -143101811 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 684644 684674 -143101781 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 684685 684750 -143101705 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 684751 684776 -143101679 + AT_rich Low_complexity Low_complexity 1 25 0 2413 102 0 10 chr12 684778 685092 -143101363 - AluSx SINE Alu -1 311 1 1081 123 31 44 chr12 685104 685215 -143101240 - L1MA4 LINE L1 -16 6284 6173 2041 162 0 0 chr12 685215 685524 -143100931 - AluJo SINE Alu -3 309 1 1081 123 31 44 chr12 685524 685640 -143100815 - L1MA4 LINE L1 -127 6173 6060 1142 190 0 74 chr12 685646 685891 -143100564 - L1MB7 LINE L1 -352 5832 5620 2427 84 0 3 chr12 685891 686190 -143100265 - AluSx SINE Alu -14 298 1 1142 190 0 74 chr12 686190 686256 -143100199 - L1MB7 LINE L1 -564 5620 5551 2707 125 29 7 chr12 686284 686731 -143099724 - MER4C LTR ERV1 -1 464 8 2357 84 3 7 chr12 687118 687415 -143099040 - AluSg SINE Alu -14 296 1 271 246 0 0 chr12 687537 687594 -143098861 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 687619 687643 -143098812 + (A)n Simple_repeat Simple_repeat 1 24 0 301 291 0 0 chr12 687755 687834 -143098621 - MLT1K LTR MaLR -178 410 332 279 77 0 0 chr12 688423 688462 -143097993 - MSTB LTR MaLR 0 426 388 2380 98 0 0 chr12 688465 688761 -143097694 + AluSg SINE Alu 1 296 -14 872 185 17 28 chr12 688769 688947 -143097508 + AluJb SINE Alu 137 312 0 1383 176 105 5 chr12 688951 689280 -143097175 - MSTB LTR MaLR -31 426 4 838 175 0 0 chr12 689352 689478 -143096977 - FLAM_C SINE Alu -17 126 1 2552 70 0 0 chr12 689480 689781 -143096674 - AluSx SINE Alu -11 301 1 1684 171 0 55 chr12 689781 690109 -143096346 - AluJb SINE Alu 0 312 3 569 255 110 57 chr12 690186 690277 -143096178 + MER115 DNA AcHobo 410 495 -198 1995 63 4 0 chr12 690277 690515 -143095940 - AluY SINE Alu -17 294 56 569 255 110 57 chr12 690515 690686 -143095769 + MER115 DNA AcHobo 495 686 -7 232 271 59 35 chr12 691110 691195 -143095260 - MIR SINE MIR -75 187 101 2342 88 0 0 chr12 691221 691515 -143094940 - AluSc SINE Alu -14 295 2 1909 172 0 0 chr12 691520 691810 -143094645 - AluJb SINE Alu -20 292 3 1167 81 64 47 chr12 691821 691971 -143094484 - AluSg/x SINE Alu -18 294 139 2291 108 0 3 chr12 691971 692266 -143094189 - AluSx SINE Alu -18 294 1 1167 81 64 47 chr12 692266 692287 -143094168 - AluSg/x SINE Alu -173 139 120 186 80 0 0 chr12 692288 692313 -143094142 - MIR SINE MIR -154 108 84 331 174 0 111 chr12 692343 692457 -143093998 - MER45A DNA AcHobo 0 178 81 192 286 0 0 chr12 692517 692559 -143093896 - MIR SINE MIR -136 72 31 283 285 191 45 chr12 692705 692731 -143093724 + L2 LINE L2 1528 1549 -1765 720 216 22 50 chr12 692731 692812 -143093643 - MER69A DNA AcHobo -2349 177 95 2212 88 51 0 chr12 692812 693107 -143093348 + AluY SINE Alu 1 310 -1 720 216 22 50 chr12 693107 693206 -143093249 - MER69A DNA AcHobo -2431 95 2 283 285 191 45 chr12 693206 693446 -143093009 + L2 LINE L2 1549 1833 -1481 1401 134 96 193 chr12 693461 694009 -143092446 - LTR36 LTR ERV1 -1 610 123 2192 42 48 31 chr12 694009 694298 -143092157 - AluY SINE Alu -6 305 12 1401 134 96 193 chr12 694298 694345 -143092110 - LTR36 LTR ERV1 -488 123 73 434 214 0 11 chr12 694493 694582 -143091873 + LTR23 LTR ERV1 329 416 -21 413 296 50 25 chr12 695148 695307 -143091148 + MER4B-int LTR ERV1 533 695 -6063 1847 158 31 74 chr12 695582 696030 -143090425 + MER4B-int LTR ERV1 1557 1985 -4346 543 256 0 0 chr12 696053 696229 -143090226 + (CA)n Simple_repeat Simple_repeat 1 176 0 2790 207 46 29 chr12 696229 696942 -143089513 + MER4B-int LTR ERV1 751 2657 -3674 2677 144 58 15 chr12 696942 697408 -143089047 - MER66B LTR ERV1 0 486 1 225 239 0 0 chr12 697408 697454 -143089001 + MER31A LTR ERV1 37 82 -403 226 217 0 0 chr12 697459 697505 -143088950 - MER54B LTR ERVL -2 791 746 2062 136 43 111 chr12 697505 697721 -143088734 + MER4B-int LTR ERV1 2718 2947 -3384 2046 152 7 0 chr12 697721 698017 -143088438 - AluSx SINE Alu -14 298 1 2062 136 43 111 chr12 698017 698052 -143088403 + MER4B-int LTR ERV1 2947 2983 -3348 2348 88 7 0 chr12 698052 698346 -143088109 - AluSp SINE Alu -16 297 2 2062 136 43 111 chr12 698346 698645 -143087810 + MER4B-int LTR ERV1 2983 3232 -3099 1129 154 0 38 chr12 698645 698898 -143087557 + AluSx SINE Alu 1 309 -3 252 125 21 0 chr12 698901 698949 -143087506 + MER4B-int LTR ERV1 3224 3272 -3059 503 177 0 10 chr12 698982 699078 -143087377 + MER4B-int LTR ERV1 3246 3340 -2991 427 198 66 19 chr12 699135 699241 -143087214 + MER4B-int LTR ERV1 3354 3464 -2867 1364 206 94 4 chr12 699400 699667 -143086788 + AluJb SINE Alu 1 291 -11 2571 63 3 0 chr12 699689 699991 -143086464 - AluY SINE Alu -8 303 1 3236 123 54 40 chr12 700051 700293 -143086162 - MER4A LTR ERV1 0 600 363 1969 108 9 97 chr12 700293 700635 -143085820 - AluSq SINE Alu 0 313 2 3236 123 54 40 chr12 700635 700984 -143085471 - MER4A LTR ERV1 -237 363 1 1777 104 104 15 chr12 701047 701366 -143085089 + AluSp SINE Alu 5 313 0 753 225 61 97 chr12 701425 701736 -143084719 - MER51C LTR ERV1 0 640 341 2046 112 3 7 chr12 702064 702359 -143084096 - AluSp SINE Alu -14 299 6 2182 133 32 61 chr12 702412 702552 -143083903 + LTR23 LTR ERV1 4 147 -290 2431 93 0 3 chr12 702552 702864 -143083591 - AluY SINE Alu 0 311 1 2182 133 32 61 chr12 702864 703165 -143083290 + LTR23 LTR ERV1 147 432 -5 3706 107 59 37 chr12 703234 703794 -143082661 + MER4B LTR ERV1 2 577 -33 2409 77 20 0 chr12 703794 704093 -143082362 - AluSg SINE Alu -5 305 1 3706 107 59 37 chr12 704093 704128 -143082327 + MER4B LTR ERV1 577 610 0 2610 59 3 0 chr12 705092 705399 -143081056 + AluY SINE Alu 1 308 -3 1118 95 0 0 chr12 705960 706097 -143080358 + FRAM SINE Alu 1 137 -39 200 35 35 0 chr12 706099 706128 -143080327 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 405 207 0 0 chr12 706217 706304 -143080151 + MER113 DNA MER1_type? 1 87 -434 22 0 0 0 chr12 706407 706429 -143080026 + AT_rich Low_complexity Low_complexity 1 22 0 226 276 165 24 chr12 706482 706609 -143079846 + MIR SINE MIR 53 197 -65 251 71 24 0 chr12 706610 706652 -143079803 + (TG)n Simple_repeat Simple_repeat 2 44 0 779 148 9 9 chr12 706652 706767 -143079688 - FLAM_C SINE Alu -18 115 1 203 318 16 0 chr12 706781 706844 -143079611 + L2 LINE L2 3193 3256 -16 197 282 111 50 chr12 707182 707327 -143079128 - MIR3 SINE MIR -62 146 7 395 233 41 48 chr12 707373 707519 -143078936 + MER103 DNA DNA 4 148 -18 2270 101 3 3 chr12 707854 708160 -143078295 - AluSp SINE Alu -7 306 1 2490 96 0 0 chr12 708891 709203 -143077252 - AluSx SINE Alu 0 312 1 693 313 26 49 chr12 709374 709639 -143076816 - MLT1I LTR MaLR 0 409 151 253 271 73 0 chr12 710133 710229 -143076226 + L1ME4a LINE L1 6015 6117 -4 2443 91 3 0 chr12 711122 711429 -143075026 - AluSg SINE Alu -2 308 1 2191 125 0 19 chr12 711439 711758 -143074697 - AluSp SINE Alu 0 313 1 460 122 61 12 chr12 711758 711830 -143074625 - AluJ/FRAM SINE Alu -10 302 224 976 136 0 32 chr12 711838 711993 -143074462 - AluJo SINE Alu -162 150 1 217 286 39 0 chr12 712559 712636 -143073819 - MIR SINE MIR -96 166 87 252 0 0 0 chr12 712752 712780 -143073675 + (TG)n Simple_repeat Simple_repeat 2 29 0 307 207 78 69 chr12 713163 713279 -143073176 + L1ME4a LINE L1 5836 5952 -169 1305 80 0 0 chr12 713294 713456 -143072999 + AluY SINE Alu 136 297 -14 563 241 86 26 chr12 713484 713716 -143072739 + MIR SINE MIR 17 262 0 675 181 132 0 chr12 713733 713877 -143072578 + MER45A DNA AcHobo 2 164 -14 2225 119 7 0 chr12 713942 714252 -143072203 - AluSx SINE Alu 0 312 1 395 222 57 45 chr12 714258 714331 -143072124 + L1ME4a LINE L1 5944 6015 -106 1414 153 122 49 chr12 714331 714618 -143071837 - AluJb SINE Alu -4 308 1 395 222 57 45 chr12 714618 714720 -143071735 + L1ME4a LINE L1 6015 6121 0 223 188 14 72 chr12 714753 714822 -143071633 - MIR SINE MIR -63 145 81 2485 78 0 0 chr12 715674 715970 -143070485 - AluSq SINE Alu -17 296 1 336 245 125 87 chr12 716135 716295 -143070160 - MIR SINE MIR -12 250 98 1444 137 34 0 chr12 716295 716529 -143069926 + L1MC1 LINE L1 6089 6330 -3 279 0 0 0 chr12 716530 716561 -143069894 + (CA)n Simple_repeat Simple_repeat 1 31 0 336 245 125 87 chr12 716561 716606 -143069849 - MIR SINE MIR -163 99 35 192 77 0 0 chr12 716669 716695 -143069760 + (TG)n Simple_repeat Simple_repeat 1 26 0 320 266 222 11 chr12 716724 716903 -143069552 + MIR SINE MIR 6 216 -46 1713 181 90 73 chr12 717377 717600 -143068855 - L1MC5 LINE L1 -46 7915 7697 2406 80 3 0 chr12 717600 717900 -143068555 + AluY SINE Alu 1 301 -10 1713 181 90 73 chr12 717900 718079 -143068376 - L1MC5 LINE L1 -264 7697 7523 1468 167 33 60 chr12 718079 718242 -143068213 - AluJo SINE Alu -19 293 140 2133 130 3 0 chr12 718242 718534 -143067921 - AluSq SINE Alu -20 293 1 1468 167 33 60 chr12 718534 718669 -143067786 - AluJo SINE Alu -172 140 3 1713 181 90 73 chr12 718669 718899 -143067556 - L1MC5 LINE L1 -438 7523 7271 834 106 0 0 chr12 719008 719131 -143067324 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1999 98 3 57 chr12 719137 719434 -143067021 - AluSq SINE Alu -32 281 1 2275 85 3 7 chr12 719848 720143 -143066312 - AluSg SINE Alu -16 294 1 2264 111 0 13 chr12 720473 720780 -143065675 + AluSx SINE Alu 1 303 -9 928 169 12 24 chr12 720797 720963 -143065492 + FRAM SINE Alu 1 164 -2 429 222 26 17 chr12 720975 721092 -143065363 - MER3 DNA MER1_type -46 163 46 2008 115 41 7 chr12 721548 721843 -143064612 - AluSx SINE Alu -7 305 1 386 285 82 13 chr12 721854 722012 -143064443 - MIR3 SINE MIR -6 202 34 1022 197 13 70 chr12 722531 722759 -143063696 + MER58A DNA MER1_type 1 215 -9 1854 132 0 53 chr12 722760 723079 -143063376 + AluJb SINE Alu 1 302 -10 1709 156 7 42 chr12 723510 723818 -143062637 - AluJo SINE Alu -15 297 1 765 177 0 0 chr12 723824 723948 -143062507 - FLAM_C SINE Alu -9 124 1 1125 74 0 0 chr12 724133 724268 -143062187 + AluSg/x SINE Alu 160 294 -18 225 65 0 0 chr12 727084 727115 -143059340 + (TC)n Simple_repeat Simple_repeat 2 32 0 939 286 39 16 chr12 727307 727671 -143058784 + L2 LINE L2 2942 3313 0 1772 163 4 11 chr12 728137 728413 -143058042 + AluJo SINE Alu 1 274 -38 2006 144 6 10 chr12 728565 728877 -143057578 + AluSx SINE Alu 1 311 -1 756 208 0 0 chr12 728889 729019 -143057436 + FLAM_A SINE Alu 2 131 -2 718 138 7 7 chr12 729074 729212 -143057243 + GA-rich Low_complexity Low_complexity 3 140 0 2202 123 0 7 chr12 729656 729964 -143056491 - AluSx SINE Alu -6 306 1 235 54 89 71 chr12 730564 730620 -143055835 - L1MB2 LINE L1 -2 6169 6113 2006 73 98 4 chr12 730620 730894 -143055561 + AluSx SINE Alu 12 311 -1 1862 151 3 13 chr12 731563 731874 -143054581 - AluJo SINE Alu -4 308 1 36 0 0 0 chr12 732411 732447 -143054008 + AT_rich Low_complexity Low_complexity 1 36 0 2814 177 46 41 chr12 732591 732656 -143053799 + MER82 DNA MER2_type 62 125 -528 2574 55 3 0 chr12 732656 732963 -143053492 - AluY SINE Alu -3 308 1 2814 177 46 41 chr12 732963 733486 -143052969 + MER82 DNA MER2_type 125 653 0 449 244 84 0 chr12 733756 733887 -143052568 + MER5A DNA MER1_type 48 189 0 219 225 79 45 chr12 733989 734078 -143052377 + MIR SINE MIR 56 147 -115 202 139 28 0 chr12 734292 734328 -143052127 + CT-rich Low_complexity Low_complexity 2 38 0 2370 106 0 0 chr12 734502 734804 -143051651 - AluSx SINE Alu -10 302 1 881 200 0 0 chr12 734846 734996 -143051459 - FRAM SINE Alu -30 146 1 207 0 0 0 chr12 734996 735019 -143051436 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1883 128 23 0 chr12 735019 735284 -143051171 - AluJo SINE Alu -30 282 12 4975 38 8 0 chr12 735695 736281 -143050174 - LTR10C LTR ERV1 0 591 1 1056 98 22 120 chr12 736762 736987 -143049468 + LTR23 LTR ERV1 94 296 -141 917 144 0 7 chr12 737073 737212 -143049243 + AluJb SINE Alu 4 141 -171 728 135 127 0 chr12 737443 737569 -143048886 + AluSc SINE Alu 168 309 0 1788 158 0 17 chr12 737602 737900 -143048555 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 738823 738875 -143047580 + (TA)n Simple_repeat Simple_repeat 2 56 0 3212 121 81 19 chr12 738896 739153 -143047302 - L1MC1 LINE L1 -6 6327 6087 890 18 0 9 chr12 739153 739262 -143047193 + (CATAG)n Simple_repeat Simple_repeat 2 109 0 3212 121 81 19 chr12 739262 739598 -143046857 - L1MC1 LINE L1 -246 6087 5697 2256 72 0 49 chr12 739603 739909 -143046546 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 739909 740071 -143046384 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 740083 740195 -143046260 + L1ME LINE L1 5746 5857 -313 2229 100 3 13 chr12 740416 740726 -143045729 + AluSg SINE Alu 1 307 -3 8147 157 51 12 chr12 741156 742764 -143043691 + L1MC/D LINE L1 89 1853 -4573 515 167 0 0 chr12 742764 742848 -143043607 + AluS SINE Alu 1 84 -229 566 152 29 0 chr12 742849 742954 -143043501 + L1MC/D LINE L1 1841 1948 -4478 2478 90 3 0 chr12 742981 743293 -143043162 + AluSq SINE Alu 1 313 0 628 214 79 5 chr12 743411 743594 -143042861 + L1MC/D LINE L1 2354 2589 -3947 1586 186 14 24 chr12 743595 743891 -143042564 + AluJo SINE Alu 1 293 -19 2368 87 13 0 chr12 743921 744221 -143042234 + AluSp SINE Alu 1 304 -9 4889 202 41 58 chr12 744221 744291 -143042164 + L1MC/D LINE L1 4062 4132 -2481 2204 120 10 0 chr12 744291 744599 -143041856 + AluSp SINE Alu 2 312 -1 4889 202 41 58 chr12 744599 745308 -143041147 + L1MC/D LINE L1 4132 4852 -1761 2287 110 0 3 chr12 745308 745609 -143040846 + AluSx SINE Alu 1 300 -12 4889 202 41 58 chr12 745609 745762 -143040693 + L1MC/D LINE L1 4852 5006 -1607 2205 93 0 4 chr12 745762 746064 -143040391 + AluSc SINE Alu 2 302 0 4889 202 41 58 chr12 746064 746147 -143040308 + L1MC/D LINE L1 5006 5089 -1524 2342 95 0 0 chr12 746147 746442 -143040013 + AluSg SINE Alu 1 295 -15 4889 202 41 58 chr12 746442 746987 -143039468 + L1MC/D LINE L1 5089 5587 -1026 2324 90 0 3 chr12 746987 747286 -143039169 + AluSg SINE Alu 1 298 -12 4889 202 41 58 chr12 747286 747665 -143038790 + L1MC/D LINE L1 5587 5971 -642 2294 100 0 3 chr12 747668 747968 -143038487 - AluSx SINE Alu -2 310 12 358 162 86 68 chr12 747968 748085 -143038370 - LTR36 LTR ERV1 -491 120 2 375 303 41 52 chr12 748093 748360 -143038095 + L2 LINE L2 1852 2115 -1199 1828 124 96 37 chr12 748406 748760 -143037695 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 748777 749080 -143037375 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 749170 749427 -143037028 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 749505 749815 -143036640 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 749815 750141 -143036314 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 750147 750327 -143036128 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 750895 750934 -143035521 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 751142 751514 -143034941 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 751514 751891 -143034564 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 751891 751983 -143034472 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 752133 752258 -143034197 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 752903 753014 -143033441 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 753724 753937 -143032518 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 754353 754434 -143032021 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 755082 755430 -143031025 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 755539 755651 -143030804 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 755651 755725 -143030730 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 756447 756633 -143029822 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 756643 756806 -143029649 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 757570 757632 -143028823 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 757700 757915 -143028540 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 757915 758206 -143028249 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 758206 758337 -143028118 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 758357 758742 -143027713 - MSTA LTR MaLR -1 427 13 327 130 0 0 chr12 758742 758788 -143027667 - MSTA LTR MaLR -382 46 1 3620 228 50 50 chr12 759169 759249 -143027206 + L1MEc LINE L1 35 113 -6092 1612 67 5 14 chr12 759249 759459 -143026996 - AluY SINE Alu -21 290 83 3620 228 50 50 chr12 759459 760309 -143026146 + L1MEc LINE L1 113 961 -5244 2503 80 3 0 chr12 760309 760611 -143025844 + AluSp SINE Alu 1 303 -10 3620 228 50 50 chr12 760611 760694 -143025761 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 760694 760842 -143025613 + L1PA5 LINE L1 5998 6145 -9 3620 228 50 50 chr12 760842 760866 -143025589 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 760875 760936 -143025519 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 760938 761213 -143025242 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 761213 761496 -143024959 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 761496 761629 -143024826 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 761629 761913 -143024542 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 761913 762027 -143024428 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 762048 762078 -143024377 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 762083 762193 -143024262 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 762194 762422 -143024033 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 762422 762716 -143023739 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 762716 763115 -143023340 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 763119 763182 -143023273 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 763222 763304 -143023151 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 763309 763612 -143022843 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 763637 763775 -143022680 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 763934 764394 -143022061 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 764404 764687 -143021768 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 764707 764838 -143021617 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 764889 764911 -143021544 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 765044 765317 -143021138 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 765411 765633 -143020822 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 766153 766295 -143020160 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 766308 766335 -143020120 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 767309 767352 -143019103 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 767354 767660 -143018795 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 767729 768030 -143018425 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 768084 768142 -143018313 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 768170 768464 -143017991 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 769720 770029 -143016426 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 770323 770627 -143015828 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 771069 771125 -143015330 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 771125 771388 -143015067 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 771388 772295 -143014160 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 772295 772444 -143014011 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 772451 772526 -143013929 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 772528 772652 -143013803 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 772672 772971 -143013484 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 772972 773048 -143013407 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 773042 773433 -143013022 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 773433 773741 -143012714 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 773741 773991 -143012464 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 773991 774021 -143012434 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 774021 774150 -143012305 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 774284 774427 -143012028 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 774483 774514 -143011941 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 774710 774847 -143011608 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 774895 775106 -143011349 + AluSg/x SINE Alu 90 302 -10 465 284 117 94 chr12 775213 775424 -143011031 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 775424 775588 -143010867 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 775588 775611 -143010844 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 775611 775901 -143010554 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 775901 776120 -143010335 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 776156 776177 -143010278 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 776187 776459 -143009996 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 776524 776569 -143009886 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 776569 776865 -143009590 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 776865 777428 -143009027 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 778162 778256 -143008199 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 780143 780185 -143006270 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 781628 782027 -143004428 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 782752 782774 -143003681 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 783638 783947 -143002508 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 784870 784917 -143001538 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 785250 785438 -143001017 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 785699 786006 -143000449 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 786314 786551 -142999904 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 786953 786993 -142999462 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 787216 787251 -142999204 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 787272 787572 -142998883 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 787661 787858 -142998597 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 788704 789028 -142997427 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 789851 789989 -142996466 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 789989 790286 -142996169 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 790286 790485 -142995970 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 790678 790989 -142995466 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 791025 791094 -142995361 - Tigger7 DNA MER2_type -31 2456 2388 800 118 118 123 chr12 791111 791245 -142995210 - Tigger7 DNA MER2_type -489 244 110 2265 105 0 16 chr12 791245 791549 -142994906 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 791549 791601 -142994854 - Tigger7 DNA MER2_type -623 110 59 341 286 34 84 chr12 791870 792108 -142994347 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 792303 792608 -142993847 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 792770 792808 -142993647 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 792808 793073 -142993382 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 793073 793209 -142993246 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 793209 793497 -142992958 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 793497 793541 -142992914 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 793592 793731 -142992724 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 793947 794043 -142992412 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 794044 794198 -142992257 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 794206 794229 -142992226 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 794428 794720 -142991735 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 794722 795020 -142991435 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 795184 795494 -142990961 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 796070 796379 -142990076 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 796754 797051 -142989404 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 797113 797147 -142989308 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 797147 797445 -142989010 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 797445 797642 -142988813 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 797664 797916 -142988539 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 797916 798217 -142988238 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 798217 798274 -142988181 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 798309 798494 -142987961 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 798941 799239 -142987216 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 799461 799678 -142986777 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 799765 799883 -142986572 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 800069 800170 -142986285 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 800348 800425 -142986030 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 800921 801214 -142985241 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 801580 801679 -142984776 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 801679 801871 -142984584 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 802514 802638 -142983817 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 803392 803627 -142982828 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 803699 803868 -142982587 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 803996 804273 -142982182 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 804338 804389 -142982066 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 804389 804673 -142981782 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 805095 805401 -142981054 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 806234 806265 -142980190 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 806269 806574 -142979881 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 806581 806602 -142979853 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 807305 807645 -142978810 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 808904 809039 -142977416 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 809044 809071 -142977384 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 809516 809538 -142976917 + AT_rich Low_complexity Low_complexity 1 22 0 223 342 63 9 chr12 810273 810384 -142976071 - MIR SINE MIR -70 192 76 1848 114 8 0 chr12 810501 810747 -142975708 - AluSx SINE Alu -64 248 1 1026 138 71 55 chr12 810750 810842 -142975613 - MER33 DNA MER1_type -2304 281 192 1949 124 3 54 chr12 810842 811157 -142975298 - AluJo SINE Alu -13 299 1 1026 138 71 55 chr12 811157 811311 -142975144 - MER33 DNA MER1_type -2393 192 31 1249 152 4 52 chr12 811311 811542 -142974913 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 811596 811817 -142974638 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 811852 811879 -142974576 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 811883 812174 -142974281 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 812177 812199 -142974256 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 812455 812568 -142973887 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 812566 813346 -142973109 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 813366 813632 -142972823 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 813697 813722 -142972733 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 813747 813937 -142972518 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 813960 814413 -142972042 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 814413 814710 -142971745 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 814710 814864 -142971591 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 815093 815114 -142971341 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 815131 815229 -142971226 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 815250 815356 -142971099 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 815362 815458 -142970997 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 815775 815798 -142970657 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 815820 816212 -142970243 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 816552 816830 -142969625 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 817478 817640 -142968815 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 817855 818086 -142968369 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 818215 818342 -142968113 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 818721 818770 -142967685 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 819169 819207 -142967248 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 820249 820557 -142965898 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 820762 820792 -142965663 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 820878 820969 -142965486 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 821705 822353 -142964102 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 822366 822715 -142963740 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 822715 822995 -142963460 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 822995 823270 -142963185 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 823270 823620 -142962835 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 823620 823667 -142962788 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 823826 824117 -142962338 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 824138 824288 -142962167 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 824448 824519 -142961936 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 825606 825910 -142960545 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 826131 826435 -142960020 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 826594 826617 -142959838 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 827079 827374 -142959081 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 827506 827628 -142958827 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 827628 827905 -142958550 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 827905 828096 -142958359 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 828104 828343 -142958112 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 828367 828388 -142958067 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 828402 828447 -142958008 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 829367 829408 -142957047 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 829408 829650 -142956805 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 831444 831707 -142954748 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 832211 832373 -142954082 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 832373 832616 -142953839 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 832616 832835 -142953620 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 832848 832914 -142953541 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 832914 833307 -142953148 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 833801 833823 -142952632 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 835121 835236 -142951219 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 835652 835962 -142950493 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 836234 836350 -142950105 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 836705 837007 -142949448 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 837169 837201 -142949254 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 837913 838202 -142948253 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 840291 840357 -142946098 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 840611 840856 -142945599 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 840911 841201 -142945254 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 841975 842280 -142944175 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 842616 843144 -142943311 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 843825 844083 -142942372 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 844212 844531 -142941924 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 844713 845154 -142941301 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 845154 845297 -142941158 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 845600 845917 -142940538 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 845951 846136 -142940319 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 846250 846401 -142940054 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 846462 846566 -142939889 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 846566 847271 -142939184 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 847279 847493 -142938962 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 847497 848410 -142938045 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 848410 848719 -142937736 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 848719 849407 -142937048 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 849421 850031 -142936424 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 850031 850336 -142936119 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 850336 851580 -142934875 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 851586 851686 -142934769 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 851844 852151 -142934304 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 852714 852747 -142933708 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 852881 852912 -142933543 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 853024 853172 -142933283 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 853302 853533 -142932922 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 853623 853708 -142932747 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 853897 854068 -142932387 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 854072 854265 -142932190 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 854378 854574 -142931881 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 855460 855772 -142930683 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 855860 855925 -142930530 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 855959 856272 -142930183 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 856381 856612 -142929843 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 858661 859024 -142927431 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 859075 859199 -142927256 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 859199 859496 -142926959 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 859496 859799 -142926656 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 860012 860306 -142926149 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 860998 861163 -142925292 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 861777 862098 -142924357 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 862509 862634 -142923821 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 862980 863299 -142923156 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 863476 863570 -142922885 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 863614 863909 -142922546 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 864887 864966 -142921489 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 864966 865235 -142921220 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 865235 865546 -142920909 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 865546 865723 -142920732 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 865723 866022 -142920433 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 866022 866058 -142920397 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 866058 866345 -142920110 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 866348 866654 -142919801 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 866655 866838 -142919617 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 866847 866990 -142919465 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 867281 867460 -142918995 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 867606 867653 -142918802 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 867672 867970 -142918485 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 867990 868064 -142918391 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 868064 868352 -142918103 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 868352 868632 -142917823 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 869037 869446 -142917009 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 869547 869923 -142916532 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 870003 870049 -142916406 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 870226 870265 -142916190 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 870421 870442 -142916013 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 870867 870894 -142915561 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 870897 871180 -142915275 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 871204 871583 -142914872 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 871585 871654 -142914801 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 871675 871817 -142914638 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 872065 872379 -142914076 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 872756 872782 -142913673 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 872829 873138 -142913317 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 873163 873206 -142913249 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 873476 873580 -142912875 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 873806 873959 -142912496 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 875536 875604 -142910851 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 875740 876048 -142910407 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 876440 876460 -142909995 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 877514 878924 -142907531 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 881702 881994 -142904461 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 882029 882293 -142904162 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 882299 882591 -142903864 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 882675 882982 -142903473 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 883775 884082 -142902373 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 884084 884109 -142902346 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 884109 884423 -142902032 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 884423 884451 -142902004 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 886138 886433 -142900022 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 886591 886716 -142899739 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 887651 887959 -142898496 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 887983 888030 -142898425 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 892044 892354 -142894101 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 894320 894602 -142891853 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 894785 895083 -142891372 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 895679 895705 -142890750 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 897434 897477 -142888978 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 898505 898711 -142887744 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 899556 899846 -142886609 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 900058 900380 -142886075 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 901978 902110 -142884345 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 902617 902820 -142883635 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 904070 904364 -142882091 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 904596 904732 -142881723 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 904798 904947 -142881508 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 904996 905308 -142881147 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 906863 906922 -142879533 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 907457 907481 -142878974 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 910064 910106 -142876349 - L3b LINE CR1 -22 1561 1520 2016 116 0 7 chr12 910145 910422 -142876033 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 911821 911978 -142874477 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 917480 917767 -142868688 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 917895 918196 -142868259 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 919087 919381 -142867074 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 919537 919571 -142866884 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 919640 919714 -142866741 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 919716 919881 -142866574 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 919881 919983 -142866472 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 920021 920174 -142866281 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 920201 920396 -142866059 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 920657 920762 -142865693 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 920899 920916 -142865539 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 920916 921219 -142865236 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 921219 921368 -142865087 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 921485 921791 -142864664 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 921879 922172 -142864283 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 923358 923390 -142863065 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 923390 923702 -142862753 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 924830 924883 -142861572 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 924966 925047 -142861408 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 926146 926449 -142860006 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 926516 926688 -142859767 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 926691 926982 -142859473 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 927242 927523 -142858932 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 927951 927978 -142858477 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 927978 928230 -142858225 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 929958 930257 -142856198 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 930748 930788 -142855667 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 932730 932803 -142853652 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 934699 934980 -142851475 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 934980 935277 -142851178 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 938637 938661 -142847794 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 939217 939238 -142847217 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 939675 939976 -142846479 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 940105 940461 -142845994 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 940522 940684 -142845771 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 942817 943096 -142843359 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 943651 943958 -142842497 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 944322 944389 -142842066 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 945543 945662 -142840793 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 945692 945893 -142840562 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 945903 946330 -142840125 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 946330 946650 -142839805 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 946650 946856 -142839599 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 946897 947108 -142839347 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 947115 947400 -142839055 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 947405 947708 -142838747 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 947712 948009 -142838446 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 948009 948174 -142838281 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 948181 948216 -142838239 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 948216 948518 -142837937 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 948518 949268 -142837187 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 949281 949529 -142836926 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 949533 949629 -142836826 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 949629 949653 -142836802 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 949653 949687 -142836768 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 949688 949765 -142836690 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 949765 950057 -142836398 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 950057 950643 -142835812 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 950651 950755 -142835700 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 950760 951099 -142835356 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 951118 951174 -142835281 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 951202 951535 -142834920 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 951535 951711 -142834744 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 951705 951717 -142834738 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 951717 952022 -142834433 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 952022 952069 -142834386 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 952069 952360 -142834095 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 952360 952408 -142834047 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 952888 953190 -142833265 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 953588 953696 -142832759 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 953962 954151 -142832304 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 954151 954472 -142831983 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 954472 954696 -142831759 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 955360 955525 -142830930 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 955525 955819 -142830636 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 955819 955852 -142830603 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 955868 956170 -142830285 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 956170 956473 -142829982 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 956473 956853 -142829602 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 956853 957106 -142829349 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 957106 957311 -142829144 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 957311 957459 -142828996 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 957448 957626 -142828829 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 958209 958329 -142828126 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 958625 958931 -142827524 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 959339 959426 -142827029 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 959425 959624 -142826831 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 960017 960147 -142826308 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 960155 960450 -142826005 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 961117 961418 -142825037 + AluY SINE Alu 1 302 -9 1005 183 177 19 chr12 961678 961780 -142824675 + MER46B DNA MER2_type 2 87 -2644 1773 145 69 7 chr12 961780 962069 -142824386 + AluJo SINE Alu 1 307 -5 1005 183 177 19 chr12 962069 962125 -142824330 + MER46B DNA MER2_type 87 133 -2598 2291 91 20 0 chr12 962125 962422 -142824033 + AluSx SINE Alu 1 303 -9 1005 183 177 19 chr12 962422 962573 -142823882 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 962581 962721 -142823734 + L1MA9 LINE L1 6162 6307 -5 2226 111 0 7 chr12 962771 963060 -142823395 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 963286 963320 -142823135 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 963322 963562 -142822893 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 964148 964446 -142822009 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 964446 964622 -142821833 + AluSg/x SINE Alu 134 311 -1 680 188 100 109 chr12 964922 965151 -142821304 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 965182 965256 -142821199 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 965260 965341 -142821114 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 965341 965639 -142820816 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 965639 965809 -142820646 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 965820 966545 -142819910 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 966613 966928 -142819527 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 966962 967133 -142819322 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 967459 967659 -142818796 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 967662 967891 -142818564 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 967945 968016 -142818439 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 968033 968490 -142817965 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 968490 968783 -142817672 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 968783 969264 -142817191 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 969264 969380 -142817075 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 969380 969686 -142816769 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 969686 970020 -142816435 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 970136 970421 -142816034 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 970423 970465 -142815990 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 970729 971029 -142815426 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 971091 971299 -142815156 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 971418 971439 -142815016 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 971440 971716 -142814739 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 971716 971882 -142814573 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 972134 972379 -142814076 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 972379 972687 -142813768 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 972689 973012 -142813443 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 973012 973479 -142812976 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 973494 973640 -142812815 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 973659 974195 -142812260 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 974195 974676 -142811779 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 974708 974877 -142811578 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 974921 975230 -142811225 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 975332 975375 -142811080 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 975701 975966 -142810489 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 976231 976253 -142810202 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 976414 976451 -142810004 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 976487 976782 -142809673 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 976795 976926 -142809529 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 976926 977221 -142809234 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 977221 977320 -142809135 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 977451 977544 -142808911 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 977701 977843 -142808612 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 977986 978066 -142808389 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 978066 978095 -142808360 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 978189 978298 -142808157 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 978401 978504 -142807951 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 978799 978969 -142807486 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 978969 979102 -142807353 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 979102 979336 -142807119 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 979339 979465 -142806990 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 979703 979978 -142806477 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 980239 980310 -142806145 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 980385 980695 -142805760 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 980841 981144 -142805311 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 981661 981943 -142804512 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 981994 982050 -142804405 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 982908 982951 -142803504 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 982953 983208 -142803247 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 983362 983665 -142802790 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 983943 984253 -142802202 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 984255 984548 -142801907 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 984594 984830 -142801625 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 985820 986140 -142800315 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 986184 986486 -142799969 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 986685 986988 -142799467 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 987388 987704 -142798751 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 987909 988314 -142798141 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 988325 988614 -142797841 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 988615 988840 -142797615 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 988903 989243 -142797212 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 989308 989364 -142797091 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 989364 989672 -142796783 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 989672 990096 -142796359 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 990398 990694 -142795761 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 990957 991090 -142795365 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 991090 991388 -142795067 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 991391 991414 -142795041 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 991414 991587 -142794868 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 992345 992641 -142793814 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 993020 993225 -142793230 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 993241 993542 -142792913 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 993923 994084 -142792371 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 994095 994372 -142792083 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 994374 994673 -142791782 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 994676 994701 -142791754 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 995069 995378 -142791077 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 995515 995873 -142790582 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 995915 996144 -142790311 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 996163 996323 -142790132 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 996502 996647 -142789808 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 997173 997195 -142789260 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 997543 997690 -142788765 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 997767 997796 -142788659 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 998398 998655 -142787800 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 998686 998907 -142787548 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1001390 1001589 -142784866 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1001589 1001643 -142784812 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1001783 1002078 -142784377 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1002471 1002584 -142783871 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1002788 1003049 -142783406 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1003182 1003343 -142783112 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1003443 1003774 -142782681 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1004104 1004278 -142782177 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1004724 1005021 -142781434 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1006759 1006822 -142779633 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1007007 1007083 -142779372 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1007088 1007112 -142779343 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1007206 1007516 -142778939 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1007712 1007893 -142778562 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1007898 1008061 -142778394 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1008108 1008129 -142778326 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1008327 1008992 -142777463 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1009166 1009462 -142776993 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1009622 1009930 -142776525 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1010000 1010826 -142775629 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1010826 1010971 -142775484 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1010971 1012081 -142774374 - L1M LINE L1 -1733 4413 3444 2408 70 6 70 chr12 1012081 1012212 -142774243 - THE1A LTR MaLR 0 355 217 3292 43 0 0 chr12 1012212 1012584 -142773871 - L1PA3 LINE L1 0 6155 5784 2408 70 6 70 chr12 1012584 1012761 -142773694 - THE1A LTR MaLR -138 217 70 2447 60 3 10 chr12 1012761 1013063 -142773392 - AluY SINE Alu -11 300 1 2408 70 6 70 chr12 1013063 1013108 -142773347 - THE1A LTR MaLR -285 70 24 1106 150 123 0 chr12 1013124 1013344 -142773111 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1013351 1013644 -142772811 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1013738 1013799 -142772656 + CT-rich Low_complexity Low_complexity 2 62 0 * 968 192 40 1 chr12 1013780 1014006 -142772449 - L1 LINE L1 -2963 3885 3653 2377 79 26 0 chr12 1014015 1014318 -142772137 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1014318 1014453 -142772002 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1014460 1015103 -142771352 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1015103 1015277 -142771178 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1015277 1015310 -142771145 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1015314 1015602 -142770853 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1015603 1016261 -142770194 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1016261 1016397 -142770058 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1016397 1016447 -142770008 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1016447 1016731 -142769724 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1016731 1017029 -142769426 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1017029 1017341 -142769114 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1017341 1017521 -142768934 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1017521 1017566 -142768889 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1017566 1017848 -142768607 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1017848 1018224 -142768231 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1018595 1018895 -142767560 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1018980 1019148 -142767307 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1019967 1020269 -142766186 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1021544 1021631 -142764824 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1021631 1021941 -142764514 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1021941 1022108 -142764347 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1022331 1022626 -142763829 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1022724 1022743 -142763712 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1022743 1022844 -142763611 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1022844 1022883 -142763572 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1022883 1023790 -142762665 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1023859 1024159 -142762296 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1024734 1025033 -142761422 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1025061 1025156 -142761299 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1025279 1025316 -142761139 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1025322 1025623 -142760832 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1025909 1026017 -142760438 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1026110 1026629 -142759826 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1026641 1026925 -142759530 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1027664 1027754 -142758701 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1027754 1028061 -142758394 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1028064 1028280 -142758175 - AluSg/x SINE Alu -6 306 93 359 288 61 102 chr12 1028280 1028449 -142758006 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1028580 1028719 -142757736 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1028736 1028841 -142757614 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1028842 1029138 -142757317 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1029467 1029785 -142756670 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1029799 1030111 -142756344 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1030206 1030508 -142755947 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1030508 1030803 -142755652 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1030803 1030951 -142755504 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1031420 1031548 -142754907 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1031619 1031733 -142754722 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1031865 1032232 -142754223 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1032234 1032275 -142754180 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1032417 1032785 -142753670 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1032785 1033058 -142753397 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1033058 1033327 -142753128 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1033327 1033624 -142752831 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1033624 1033661 -142752794 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1033661 1033867 -142752588 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1033867 1034172 -142752283 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1034172 1034405 -142752050 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1034405 1034560 -142751895 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1034626 1034938 -142751517 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1034985 1035019 -142751436 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1035022 1035342 -142751113 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1035591 1035794 -142750661 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1035917 1035971 -142750484 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1036116 1036577 -142749878 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1036578 1036830 -142749625 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1036901 1037167 -142749288 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1037239 1037272 -142749183 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1037280 1037568 -142748887 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1037794 1037985 -142748470 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1037985 1038275 -142748180 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1038276 1038558 -142747897 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1038558 1038849 -142747606 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1038988 1039047 -142747408 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1039390 1039688 -142746767 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1039920 1040065 -142746390 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1040079 1040204 -142746251 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1040199 1040274 -142746181 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1040274 1040369 -142746086 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1040382 1041064 -142745391 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1041069 1041186 -142745269 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1041216 1041553 -142744902 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1041698 1041748 -142744707 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1041796 1042096 -142744359 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1042318 1042633 -142743822 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1043848 1043882 -142742573 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1044047 1044306 -142742149 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1044424 1044714 -142741741 - L2 LINE L2 0 3313 3002 2411 89 3 0 chr12 1044917 1045219 -142741236 - AluSq SINE Alu -10 303 1 1156 117 25 0 chr12 1045221 1045383 -142741072 - AluSg/x SINE Alu -6 304 139 380 64 0 0 chr12 1045421 1045468 -142740987 - MLT1B LTR MaLR 0 390 344 399 107 36 0 chr12 1045476 1045532 -142740923 - MLT1C LTR MaLR -409 58 1 1284 181 17 181 chr12 1045533 1045673 -142740782 - MLT1C-int LTR MaLR -1 1370 1209 1813 167 0 7 chr12 1045673 1045961 -142740494 + AluSx SINE Alu 1 286 -26 1284 181 17 181 chr12 1045961 1046229 -142740226 - MLT1C-int LTR MaLR -162 1209 1029 1108 123 0 25 chr12 1046232 1046434 -142740021 + AluSg/x SINE Alu 134 331 0 371 313 0 18 chr12 1046434 1046577 -142739878 - MLT1B-int LTR MaLR -334 1037 956 286 337 0 0 chr12 1046652 1046753 -142739702 - MLT1B-int LTR MaLR -958 777 677 1591 196 53 4 chr12 1046809 1047278 -142739177 - MLT1B-int LTR MaLR -484 887 238 951 117 5 143 chr12 1047281 1047477 -142738978 - AluJb SINE Alu -10 302 134 2152 131 0 0 chr12 1047477 1047774 -142738681 - AluSx SINE Alu -15 297 1 644 197 8 8 chr12 1047774 1047901 -142738554 - MLT1B-int LTR MaLR -1244 127 1 1449 193 111 14 chr12 1047904 1048035 -142738420 - MLT1B LTR MaLR -3 387 270 2346 94 7 10 chr12 1048035 1048344 -142738111 - AluSq SINE Alu -5 308 1 1449 193 111 14 chr12 1048344 1048565 -142737890 - MLT1B LTR MaLR -120 270 1 2054 148 15 38 chr12 1048595 1048825 -142737630 - L1MB3 LINE L1 -1 6182 5963 2154 107 3 13 chr12 1048825 1049124 -142737331 - AluSq SINE Alu -17 296 1 2054 148 15 38 chr12 1049124 1049285 -142737170 - L1MB3 LINE L1 -220 5963 5800 2506 61 0 3 chr12 1049293 1049589 -142736866 - AluY SINE Alu -16 295 1 1186 83 0 0 chr12 1049589 1049733 -142736722 - AluY SINE Alu -167 144 1 1230 175 22 11 chr12 1049737 1049770 -142736685 - L1MB3 LINE L1 -978 5168 5137 1665 191 0 13 chr12 1049770 1050069 -142736386 - AluJo SINE Alu -17 295 1 1230 175 22 11 chr12 1050069 1050303 -142736152 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1050303 1050323 -142736132 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1471 133 18 0 chr12 1050337 1050563 -142735892 - AluSq SINE Alu -83 230 1 2418 88 3 0 chr12 1050563 1050858 -142735597 - AluSp SINE Alu -17 296 1 818 169 0 0 chr12 1050870 1050988 -142735467 - FLAM_C SINE Alu -25 118 1 1743 164 10 10 chr12 1050991 1051284 -142735171 - AluJo SINE Alu -14 298 6 307 284 55 0 chr12 1051478 1051587 -142734868 - HAL1 LINE L1 -701 1806 1692 2266 98 13 13 chr12 1051588 1051893 -142734562 - AluSq SINE Alu -8 305 1 376 226 226 8 chr12 1051894 1052151 -142734304 - HAL1 LINE L1 -1010 1497 1185 1910 179 0 3 chr12 1052174 1052486 -142733969 - AluJb SINE Alu -1 311 1 354 136 0 34 chr12 1052489 1052548 -142733907 - Alu SINE Alu -2 300 244 338 163 0 0 chr12 1052545 1052594 -142733861 - Alu SINE Alu -254 49 1 * 933 241 0 19 chr12 1052597 1052813 -142733642 - AluJb SINE Alu -14 298 87 247 297 280 3 chr12 1052815 1053108 -142733347 - HAL1 LINE L1 -1357 1150 777 2323 170 28 35 chr12 1053108 1053568 -142732887 - MSTB2 LTR MaLR 0 457 1 289 329 13 0 chr12 1054037 1054116 -142732339 - HAL1 LINE L1 -2427 80 1 324 303 116 7 chr12 1054294 1054449 -142732006 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1055559 1055592 -142730863 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr12 1055690 1055718 -142730737 + GC_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr12 1055764 1055810 -142730645 + GC_rich Low_complexity Low_complexity 1 46 0 286 224 9 19 chr12 1055869 1055976 -142730479 + (CGG)n Simple_repeat Simple_repeat 2 107 0 1299 126 0 6 chr12 1058662 1058837 -142727618 - AluSx SINE Alu -138 174 1 1888 200 28 45 chr12 1058849 1059023 -142727432 + LTR40c LTR ERVL 35 210 -255 2445 48 31 0 chr12 1059023 1059312 -142727143 + AluY SINE Alu 1 298 -13 1888 200 28 45 chr12 1059312 1059562 -142726893 + LTR40c LTR ERVL 210 452 -13 718 205 0 0 chr12 1059695 1059812 -142726643 - FLAM_C SINE Alu -25 118 2 313 163 50 75 chr12 1059813 1059893 -142726562 + MER112 DNA MER1_type 38 115 -145 238 233 17 0 chr12 1059893 1059953 -142726502 - MLT1F1 LTR MaLR -7 560 500 342 271 0 0 chr12 1060039 1060109 -142726346 + MER112 DNA MER1_type 186 255 -5 2322 75 56 31 chr12 1060124 1060262 -142726193 + THE1C LTR MaLR 8 141 -234 1478 131 186 8 chr12 1060262 1060514 -142725941 - AluSg1 SINE Alu -12 297 1 2322 75 56 31 chr12 1060514 1060734 -142725721 + THE1C LTR MaLR 141 375 0 2037 140 3 0 chr12 1061695 1061995 -142724460 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1062426 1062459 -142723996 + A-rich Low_complexity Low_complexity 1 33 0 992 149 11 6 chr12 1062508 1062683 -142723772 - MER2 DNA MER2_type -137 208 33 409 312 48 16 chr12 1062938 1063249 -142723206 - L1M4 LINE L1 -861 5285 4965 2178 143 22 22 chr12 1063325 1063391 -142723064 - THE1B LTR MaLR 0 364 299 2088 130 10 0 chr12 1063391 1063692 -142722763 - AluSq SINE Alu -9 304 1 2178 143 22 22 chr12 1063692 1063989 -142722466 - THE1B LTR MaLR -64 300 1 583 231 124 0 chr12 1064182 1064368 -142722087 - MER46C DNA MER2_type -129 209 1 322 240 30 10 chr12 1064392 1064492 -142721963 - L1M4 LINE L1 -1429 4717 4616 322 281 104 50 chr12 1064551 1064975 -142721480 - L1M4 LINE L1 -1543 4603 4157 799 182 0 0 chr12 1064975 1065107 -142721348 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1066393 1066463 -142719992 + T-rich Low_complexity Low_complexity 1 68 0 2081 98 35 0 chr12 1066669 1066956 -142719499 + AluSx SINE Alu 1 297 -15 2351 92 0 0 chr12 1067341 1067636 -142718819 - AluSx SINE Alu -9 303 9 1946 144 28 51 chr12 1067955 1068037 -142718418 + MER7A DNA MER2_type 2 84 -2954 1592 167 30 17 chr12 1068037 1068337 -142718118 + AluJb SINE Alu 1 304 -8 1946 144 28 51 chr12 1068337 1068609 -142717846 + MER7A DNA MER2_type 84 346 0 522 279 57 13 chr12 1069438 1069596 -142716859 + MER5A DNA MER1_type 1 165 -24 2202 96 3 20 chr12 1069641 1069943 -142716512 - AluSg SINE Alu -11 299 3 216 259 19 0 chr12 1070201 1070255 -142716200 + MER5A DNA MER1_type 135 189 0 2031 142 3 19 chr12 1070461 1070636 -142715819 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1070636 1070932 -142715523 - AluY SINE Alu -16 295 1 2031 142 3 19 chr12 1070932 1071067 -142715388 - AluSx SINE Alu -175 137 1 1084 131 12 0 chr12 1071067 1071227 -142715228 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1071227 1071526 -142714929 - AluSx SINE Alu -11 301 1 778 211 0 0 chr12 1071891 1072024 -142714431 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1072024 1072057 -142714398 + AT_rich Low_complexity Low_complexity 1 33 0 2503 58 0 0 chr12 1073237 1073531 -142712924 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1073971 1074272 -142712183 - AluSq SINE Alu -13 300 1 300 240 217 16 chr12 1075106 1075235 -142711220 + L3 LINE CR1 1134 1288 -289 2350 71 0 7 chr12 1075359 1075656 -142710799 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1075660 1075682 -142710773 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 446 269 38 19 chr12 1075682 1075842 -142710613 + AluJb SINE Alu 130 292 -20 891 79 67 79 chr12 1077304 1077482 -142708973 - Tigger2a DNA MER2_type -57 387 212 1912 118 0 4 chr12 1077485 1077748 -142708707 + AluSc SINE Alu 3 264 -45 1114 167 17 43 chr12 1077799 1078033 -142708422 - Tigger2a DNA MER2_type -206 228 1 2211 108 0 0 chr12 1078455 1078750 -142707705 - AluSg SINE Alu 0 310 16 410 332 79 8 chr12 1080608 1080861 -142705594 + L1MB1 LINE L1 5098 5368 -778 275 280 134 25 chr12 1081999 1082156 -142704299 + L1MB1 LINE L1 5575 5748 -2060 1899 155 71 3 chr12 1082196 1082550 -142703905 - L1MB3 LINE L1 -1 6182 5805 2178 78 3 0 chr12 1082563 1082857 -142703598 + THE1A LTR MaLR 1 295 -60 895 122 0 0 chr12 1082854 1082985 -142703470 + THE1A LTR MaLR 223 353 -2 * 405 304 40 16 chr12 1083049 1083174 -142703281 - MIR SINE MIR -61 147 20 477 224 91 91 chr12 1083608 1083713 -142702742 + MIR SINE MIR 53 157 -105 1071 179 52 9 chr12 1083713 1083942 -142702513 + L1MB1 LINE L1 5929 6167 -1 477 224 91 91 chr12 1083942 1084046 -142702409 + MIR SINE MIR 156 262 0 2096 111 4 0 chr12 1084095 1084398 -142702057 - AluSg SINE Alu 0 304 1 1012 70 39 0 chr12 1084398 1084526 -142701929 - AluSg SINE Alu -177 133 1 2234 114 3 10 chr12 1084558 1084864 -142701591 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1086487 1086509 -142699946 + AT_rich Low_complexity Low_complexity 1 22 0 1712 149 0 55 chr12 1086745 1087054 -142699401 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1087075 1087102 -142699353 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1087544 1087574 -142698881 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1089327 1089354 -142697101 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1091540 1091624 -142694831 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1970 108 41 0 chr12 1091627 1091896 -142694559 - AluSx SINE Alu -32 280 1 260 355 127 23 chr12 1092032 1092252 -142694203 - L2 LINE L2 -260 3053 2811 435 284 90 25 chr12 1092377 1092578 -142693877 - L2 LINE L2 -540 2774 2561 2399 77 0 0 chr12 1092706 1093004 -142693451 - AluSg SINE Alu -12 298 1 622 310 47 7 chr12 1093007 1093304 -142693151 + HsTC2 DNA Tc2 5 313 -1585 561 193 30 86 chr12 1093311 1093386 -142693069 + HsTC2 DNA Tc2 1707 1785 -113 1939 146 17 0 chr12 1093386 1093681 -142692774 + AluSx SINE Alu 1 300 -12 561 193 30 86 chr12 1093681 1093802 -142692653 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1094572 1094693 -142691762 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 115 0 0 chr12 1094730 1095026 -142691429 - AluSx SINE Alu -16 296 1 2080 135 7 3 chr12 1095114 1095417 -142691038 - AluSx SINE Alu -8 304 1 190 210 49 99 chr12 1095450 1095531 -142690924 - L2 LINE L2 -1 3271 3195 1853 122 0 0 chr12 1095858 1096104 -142690351 + AluSx SINE Alu 4 249 -63 1850 158 17 7 chr12 1096638 1096935 -142689520 - AluJb SINE Alu -12 300 1 182 284 21 74 chr12 1097195 1097290 -142689165 - L2 LINE L2 0 3313 3224 304 312 39 44 chr12 1097408 1097613 -142688842 - L1ME3A LINE L1 -5 6165 5962 574 292 91 65 chr12 1097853 1098409 -142688046 - L1MEc LINE L1 -5485 911 326 2194 106 0 13 chr12 1098409 1098720 -142687735 - AluSx SINE Alu -3 309 3 574 292 91 65 chr12 1098720 1098974 -142687481 - L1MEc LINE L1 -6070 326 80 1783 289 116 42 chr12 1099002 1099881 -142686574 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1099895 1099924 -142686531 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1099932 1099957 -142686498 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 238 273 91 9 chr12 1100041 1100151 -142686304 + Charlie2 DNA MER1_type 94 212 -2570 2620 250 180 11 chr12 1100307 1100543 -142685912 - L2 LINE L2 -1 3312 3117 2389 90 0 6 chr12 1100543 1100855 -142685600 - AluSg SINE Alu 0 310 1 2620 250 180 11 chr12 1100855 1101819 -142684636 - L2 LINE L2 -196 3117 1888 642 304 37 72 chr12 1101957 1102440 -142684015 - LTR67 LTR ERVL -87 470 5 501 301 147 6 chr12 1102535 1102691 -142683764 + MER91A DNA MER1_type 19 196 0 198 236 64 91 chr12 1102871 1102981 -142683474 - L2 LINE L2 -1361 1953 1847 731 250 37 28 chr12 1103303 1103519 -142682936 - L2 LINE L2 -4 3309 3092 441 290 20 33 chr12 1103590 1103874 -142682581 - L1MC5 LINE L1 -1 8041 7668 1367 262 118 19 chr12 1103919 1104403 -142682052 - L2 LINE L2 -363 2951 2420 766 171 0 0 chr12 1104426 1104543 -142681912 - FLAM_C SINE Alu -24 119 3 268 242 81 0 chr12 1104543 1104642 -142681813 - L2 LINE L2 -950 2364 2258 255 184 0 0 chr12 1105764 1105813 -142680642 - Charlie1 DNA MER1_type 0 2761 2713 * 663 126 59 0 chr12 1105802 1105921 -142680534 - Charlie1 DNA MER1_type -865 1896 1771 2353 104 0 0 chr12 1106102 1106401 -142680054 + AluSq SINE Alu 1 299 -14 1978 202 99 8 chr12 1106690 1107175 -142679280 + MER82 DNA MER2_type 1 529 -124 2169 106 3 10 chr12 1107410 1107721 -142678734 + AluSp SINE Alu 5 313 0 2215 126 0 0 chr12 1107729 1108038 -142678417 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1108191 1108211 -142678244 + (A)n Simple_repeat Simple_repeat 1 20 0 1270 175 5 22 chr12 1108216 1108439 -142678016 - AluJo SINE Alu -30 282 64 923 291 84 29 chr12 1109091 1109133 -142677322 + LTR16C LTR ERVL 1 39 -452 2299 97 0 7 chr12 1109133 1109431 -142677024 - AluSx SINE Alu -16 296 1 923 291 84 29 chr12 1109431 1109804 -142676651 + LTR16C LTR ERVL 39 439 -52 903 221 120 73 chr12 1109833 1110106 -142676349 + L1MC4 LINE L1 7326 7624 -418 2062 140 3 3 chr12 1110106 1110413 -142676042 + AluSx SINE Alu 1 307 -5 903 221 120 73 chr12 1110413 1110523 -142675932 + L1MC4 LINE L1 7624 7727 -315 598 163 0 0 chr12 1110541 1110633 -142675822 - AluJb SINE Alu -86 226 135 359 288 93 49 chr12 1110636 1110758 -142675697 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1110758 1110791 -142675664 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 288 93 49 chr12 1110791 1110873 -142675582 + L1MC4 LINE L1 7917 7994 -48 1654 154 46 4 chr12 1110875 1111155 -142675300 - AluJo SINE Alu -20 292 1 2358 94 0 0 chr12 1111502 1111801 -142674654 + AluSg SINE Alu 3 301 -9 2157 68 0 54 chr12 1112022 1112345 -142674110 + AluSc SINE Alu 1 307 0 694 257 9 64 chr12 1112561 1112904 -142673551 + L1ME LINE L1 1182 1505 -4879 2303 219 85 22 chr12 1112935 1113029 -142673426 + L1ME LINE L1 4620 4707 -1691 2304 98 0 0 chr12 1113029 1113324 -142673131 - AluSp SINE Alu -18 295 1 2321 105 0 13 chr12 1113329 1113643 -142672812 - AluSq SINE Alu -3 310 1 2303 219 85 22 chr12 1113643 1114173 -142672282 + L1ME LINE L1 4710 5205 -1193 2283 98 0 3 chr12 1114173 1114468 -142671987 + AluSg SINE Alu 1 294 -16 2303 219 85 22 chr12 1114468 1114946 -142671509 + L1ME LINE L1 5205 5803 -595 1982 116 0 20 chr12 1115061 1115355 -142671100 - AluSx SINE Alu -24 288 1 446 277 85 66 chr12 1115359 1115630 -142670825 - L1M4 LINE L1 -867 5279 5004 1751 170 7 0 chr12 1115641 1115941 -142670514 + AluSx SINE Alu 2 303 -9 1478 158 37 30 chr12 1115947 1116245 -142670210 + AluJb SINE Alu 1 300 -12 180 0 0 0 chr12 1116315 1116335 -142670120 + (A)n Simple_repeat Simple_repeat 1 20 0 497 125 38 0 chr12 1116467 1116547 -142669908 - AluS SINE Alu -5 307 225 2305 90 0 0 chr12 1116775 1117074 -142669381 + AluSq SINE Alu 1 299 -14 1175 48 0 0 chr12 1117244 1117391 -142669064 + AluY SINE Alu 158 304 -7 1252 272 108 23 chr12 1117399 1117673 -142668782 - L2 LINE L2 -381 2933 2615 2411 57 0 0 chr12 1117673 1117971 -142668484 - AluY SINE Alu -13 298 1 1252 272 108 23 chr12 1117971 1118086 -142668369 - L2 LINE L2 -699 2615 2511 1933 132 0 3 chr12 1118086 1118381 -142668074 - AluJb SINE Alu -18 294 1 1048 174 23 5 chr12 1118382 1118600 -142667855 - AluJo SINE Alu -5 307 86 873 265 31 0 chr12 1118601 1118797 -142667658 - L2 LINE L2 -796 2518 2317 331 183 50 0 chr12 1118854 1118914 -142667541 + LTR16C LTR ERVL 55 117 -374 268 262 39 19 chr12 1119160 1119263 -142667192 + MLT1L LTR MaLR 507 611 -4 480 236 180 60 chr12 1119279 1119512 -142666943 - MIR SINE MIR 0 262 2 1590 124 93 31 chr12 1119532 1119823 -142666632 + MER44D DNA MER2_type 1 579 -30 818 239 63 43 chr12 1120231 1120532 -142665923 + L2 LINE L2 1717 2023 -1291 211 279 132 0 chr12 1120540 1120608 -142665847 + L2 LINE L2 2131 2207 -1107 1501 226 202 36 chr12 1120615 1120640 -142665815 + MLT1H1 LTR MaLR 1 21 -534 2191 93 0 7 chr12 1120640 1120931 -142665524 + AluSg SINE Alu 1 289 -21 1501 226 202 36 chr12 1120931 1121412 -142665043 + MLT1H1 LTR MaLR 21 555 0 340 242 126 11 chr12 1121412 1121507 -142664948 + L2 LINE L2 2209 2314 -1000 583 181 0 0 chr12 1121512 1121606 -142664849 - LTR16C LTR ERVL 0 491 398 * 1003 270 78 82 chr12 1121601 1122248 -142664207 - MER50 LTR ERV1 -23 711 1 995 250 49 27 chr12 1122248 1122611 -142663844 - LTR16C LTR ERVL -84 407 1 270 184 0 0 chr12 1122633 1122682 -142663773 - L1MC4 LINE L1 -472 7570 7522 426 218 30 20 chr12 1122692 1122793 -142663662 + LTR40a LTR ERVL 4 105 -414 1130 50 0 69 chr12 1122795 1122955 -142663500 - AluSg SINE Alu -161 149 1 310 286 163 0 chr12 1122986 1123084 -142663371 - L1MC4a LINE L1 -1480 6328 6215 1349 140 5 14 chr12 1123121 1123343 -142663112 + AluSx SINE Alu 1 220 -92 1015 80 29 14 chr12 1123343 1123481 -142662974 + AluSg/x SINE Alu 150 289 -21 389 70 18 0 chr12 1123482 1123539 -142662916 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1427 164 33 140 chr12 1123648 1123760 -142662695 + MLT1B LTR MaLR 1 123 -267 1840 147 7 3 chr12 1123760 1124059 -142662396 + AluSx SINE Alu 1 300 -12 1427 164 33 140 chr12 1124059 1124367 -142662088 + MLT1B LTR MaLR 123 376 -14 1916 70 0 0 chr12 1124368 1124609 -142661846 + AluY SINE Alu 1 241 -70 1255 128 5 5 chr12 1124609 1124804 -142661651 + AluSg/x SINE Alu 101 295 -17 778 233 0 0 chr12 1124841 1124987 -142661468 - MLT-int LTR MaLR -128 1607 1462 300 116 58 43 chr12 1125111 1125180 -142661275 + AluSp/q SINE Alu 221 290 -13 1224 111 6 6 chr12 1125214 1125395 -142661060 + AluSx SINE Alu 6 186 -126 2166 94 7 3 chr12 1125449 1125756 -142660699 + AluSq SINE Alu 3 310 -3 1480 166 150 17 chr12 1125898 1126259 -142660196 + L1MB7 LINE L1 5732 6140 -44 1361 125 167 0 chr12 1126260 1126500 -142659955 + AluSg SINE Alu 1 280 -30 1731 137 7 0 chr12 1126549 1126841 -142659614 - AluSx SINE Alu -18 294 1 462 168 0 56 chr12 1126893 1127000 -142659455 - AluJb SINE Alu -7 305 205 2274 60 0 3 chr12 1128132 1128430 -142658025 + AluY SINE Alu 1 297 -14 850 137 0 0 chr12 1128431 1128555 -142657900 - AluJo/FLAM SINE Alu -188 124 1 1019 96 10 96 chr12 1128556 1128765 -142657690 - L1MA7 LINE L1 -122 6169 5979 1022 79 0 0 chr12 1128768 1128894 -142657561 - AluSp SINE Alu -187 126 1 648 163 120 34 chr12 1128895 1128952 -142657503 - L1 LINE L1 -745 5401 5350 1441 180 7 40 chr12 1128952 1129252 -142657203 - AluJo SINE Alu -20 292 3 648 163 120 34 chr12 1129252 1129403 -142657052 - L1 LINE L1 -796 5350 5175 * 785 229 81 34 chr12 1129400 1129723 -142656732 - L1 LINE L1 -2848 3298 2961 1364 189 31 54 chr12 1129790 1130107 -142656348 - AluJo SINE Alu -2 310 1 808 161 0 0 chr12 1130118 1130242 -142656213 - FLAM_A SINE Alu -9 124 1 667 226 48 6 chr12 1130281 1130449 -142656006 + MLT1C LTR MaLR 1 175 -292 1748 138 17 17 chr12 1130453 1130744 -142655711 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1130744 1130798 -142655657 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1788 109 4 4 chr12 1131047 1131304 -142655151 - AluSq SINE Alu -56 257 1 269 206 52 0 chr12 1131724 1131816 -142654639 + HsTC2 DNA Tc2 14 1835 -63 192 156 0 0 chr12 1131971 1132003 -142654452 - MIR SINE MIR -152 110 79 2492 34 3 0 chr12 1132029 1132324 -142654131 + AluY SINE Alu 1 296 -15 510 158 18 70 chr12 1132552 1132666 -142653789 + MER3 DNA MER1_type 38 145 -64 302 203 127 17 chr12 1133243 1133361 -142653094 - L1M4 LINE L1 -780 5366 5236 2168 84 0 20 chr12 1133564 1133863 -142652592 + AluSc SINE Alu 3 295 -14 1729 103 58 0 chr12 1133936 1134197 -142652258 + AluSx SINE Alu 11 286 -26 1444 140 17 92 chr12 1134229 1134430 -142652025 - Tigger3(Golem) DNA MER2_type -956 275 101 2007 98 11 0 chr12 1134430 1134706 -142651749 - AluSc SINE Alu -30 279 1 1444 140 17 92 chr12 1134706 1134796 -142651659 - Tigger3(Golem) DNA MER2_type -1130 101 6 1725 156 24 0 chr12 1134840 1135128 -142651327 - AluSg SINE Alu 0 310 16 2004 135 10 0 chr12 1136022 1136318 -142650137 - AluSq SINE Alu -14 299 1 497 125 38 0 chr12 1136546 1136626 -142649829 + AluS SINE Alu 225 307 -5 627 199 0 30 chr12 1189925 1190056 -142596399 + FLAM_C SINE Alu 1 127 -6 266 290 15 8 chr12 1190621 1190752 -142595703 - L1MEc LINE L1 -6224 172 41 30 0 0 0 chr12 1191053 1191083 -142595372 + AT_rich Low_complexity Low_complexity 1 30 0 549 362 72 29 chr12 1191134 1191413 -142595042 + L2 LINE L2 2982 3272 0 775 188 0 0 chr12 1191571 1191704 -142594751 + FLAM_C SINE Alu 1 133 0 2022 143 0 13 chr12 1192003 1192311 -142594144 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr12 1193381 1193406 -142593049 + AT_rich Low_complexity Low_complexity 1 25 0 1542 185 36 26 chr12 1193805 1193929 -142592526 + AluJo SINE Alu 1 122 -190 2179 109 0 0 chr12 1193929 1194213 -142592242 + AluSg SINE Alu 1 284 -26 1542 185 36 26 chr12 1194213 1194396 -142592059 + AluJo SINE Alu 122 311 -1 21 36 0 0 chr12 1194792 1194820 -142591635 + AT_rich Low_complexity Low_complexity 1 28 0 2366 80 0 7 chr12 1194974 1195275 -142591180 - AluSg SINE Alu -2 308 10 742 186 16 0 chr12 1195275 1195404 -142591051 - AluJo/FLAM SINE Alu -170 132 2 25 65 0 0 chr12 1195881 1195927 -142590528 + AT_rich Low_complexity Low_complexity 1 46 0 1690 151 11 35 chr12 1196192 1196477 -142589978 + AluJo SINE Alu 22 299 -13 2125 99 57 0 chr12 1197339 1197621 -142588834 - AluSp SINE Alu -15 298 1 2060 118 11 3 chr12 1198025 1198312 -142588143 + AluSx SINE Alu 1 289 -23 270 0 0 0 chr12 1198854 1198884 -142587571 + (CA)n Simple_repeat Simple_repeat 1 30 0 220 291 0 18 chr12 1199259 1199314 -142587141 - L2 LINE L2 0 3272 3219 2815 16 0 0 chr12 1199331 1199642 -142586813 + AluYa5 SINE Alu 1 311 0 260 352 19 0 chr12 1199723 1199831 -142586624 - L2 LINE L2 -514 2800 2691 590 219 21 139 chr12 1200165 1200402 -142586053 - L2 LINE L2 -1 3312 3104 12794 123 36 70 chr12 1201265 1202393 -142584062 + Tigger1 DNA MER2_type 1 1166 -1252 902 229 0 0 chr12 1202393 1202559 -142583896 + FRAM SINE Alu 1 166 0 12794 123 36 70 chr12 1202559 1203303 -142583152 + Tigger1 DNA MER2_type 1166 1769 -649 2295 94 0 3 chr12 1203303 1203602 -142582853 + AluSq SINE Alu 1 298 -15 12794 123 36 70 chr12 1203602 1204231 -142582224 + Tigger1 DNA MER2_type 1769 2418 0 232 293 13 0 chr12 1205817 1205892 -142580563 - MIR SINE MIR -34 228 153 210 244 44 0 chr12 1205889 1205934 -142580521 - MIR SINE MIR -211 51 5 * 24 53 0 0 chr12 1206349 1206387 -142580068 + AT_rich Low_complexity Low_complexity 1 38 0 1688 211 7 0 chr12 1206652 1206950 -142579505 - AluJo SINE Alu -12 300 1 213 39 0 0 chr12 1207758 1207784 -142578671 + (A)n Simple_repeat Simple_repeat 1 26 0 221 325 112 0 chr12 1208067 1208162 -142578293 + MIR SINE MIR 75 190 -18 221 232 125 0 chr12 1208634 1208690 -142577765 - MER91C DNA MER1_type -44 96 34 247 333 41 20 chr12 1208823 1209018 -142577437 + L1ME4a LINE L1 5725 5923 -198 894 269 100 3 chr12 1209536 1209845 -142576610 - LTR16A LTR ERVL -6 444 106 2315 101 3 7 chr12 1210352 1210658 -142575797 + AluSq SINE Alu 1 305 -8 1602 195 7 13 chr12 1210715 1211013 -142575442 + AluJb SINE Alu 1 296 -16 2101 109 3 3 chr12 1211128 1211432 -142575023 + AluSc SINE Alu 5 308 -1 1171 169 12 4 chr12 1212408 1212657 -142573798 + L1M4 LINE L1 3811 4061 -2085 1967 139 50 36 chr12 1212658 1213017 -142573438 - THE1B LTR MaLR 0 364 1 661 125 133 0 chr12 1213017 1213145 -142573310 - THE1B-int LTR MaLR 0 1580 1436 * 870 201 115 0 chr12 1213127 1213336 -142573119 + L1MB7 LINE L1 5933 6165 -19 2311 46 0 87 chr12 1213506 1213829 -142572626 + AluY SINE Alu 2 296 -15 312 140 0 0 chr12 1214363 1214413 -142572042 + MLT1G LTR MaLR 13 62 -533 2267 64 7 0 chr12 1214498 1214906 -142571549 + AluY SINE Alu 1 410 0 327 256 97 67 chr12 1214907 1215102 -142571353 + MLT1G LTR MaLR 87 287 -303 2087 149 3 0 chr12 1215123 1215431 -142571024 + AluSx SINE Alu 1 309 -3 463 233 60 0 chr12 1215546 1215662 -142570793 + MLT1G LTR MaLR 457 579 -11 22 0 0 0 chr12 1216409 1216431 -142570024 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr12 1217223 1217258 -142569197 + AT_rich Low_complexity Low_complexity 1 35 0 859 149 0 8 chr12 1218242 1218376 -142568079 + FLAM_C SINE Alu 1 133 0 1652 130 103 4 chr12 1218419 1218681 -142567774 - AluSx SINE Alu -20 292 5 246 358 129 0 chr12 1218820 1219021 -142567434 + L3 LINE CR1 554 780 -797 217 283 0 0 chr12 1219250 1219310 -142567145 - MIR SINE MIR -111 151 92 189 295 16 16 chr12 1219361 1219422 -142567033 + L3 LINE CR1 826 886 -691 217 263 70 0 chr12 1219528 1219585 -142566870 + L3 LINE CR1 1250 1310 -267 2071 161 3 3 chr12 1219615 1219937 -142566518 + MER1B DNA MER1_type 1 322 -17 383 295 114 32 chr12 1220249 1220385 -142566070 + HAL1b LINE L1 522 645 -703 2194 81 3 69 chr12 1220385 1220717 -142565738 + AluSp SINE Alu 1 310 -3 383 295 114 32 chr12 1220717 1220861 -142565594 + HAL1b LINE L1 645 825 -523 22 35 0 0 chr12 1220921 1220950 -142565505 + AT_rich Low_complexity Low_complexity 1 29 0 261 297 226 13 chr12 1221151 1221306 -142565149 - L3 LINE CR1 -139 1438 1251 * 562 250 55 0 chr12 1221304 1221432 -142565023 + L2 LINE L2 1902 2036 -1278 230 311 0 0 chr12 1221607 1221681 -142564774 + L1P LINE L1 4887 4960 -1186 1195 191 4 27 chr12 1221786 1222042 -142564413 + AluJb SINE Alu 54 303 -9 330 307 77 29 chr12 1222133 1222466 -142563989 + L1M4 LINE L1 5174 5518 -660 1990 127 7 7 chr12 1222601 1222910 -142563545 + AluSg SINE Alu 1 309 0 26 30 0 0 chr12 1223033 1223066 -142563389 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr12 1223241 1223275 -142563180 + AT_rich Low_complexity Low_complexity 1 34 0 2322 65 17 3 chr12 1223367 1223661 -142562794 + AluY SINE Alu 1 298 -13 2692 138 77 30 chr12 1223666 1223799 -142562656 - L1P5 LINE L1 -377 5777 5652 1840 142 36 26 chr12 1223799 1224102 -142562353 - AluSx SINE Alu -6 306 1 2692 138 77 30 chr12 1224102 1224752 -142561703 - L1P5 LINE L1 -502 5652 4962 252 0 0 0 chr12 1224755 1224783 -142561672 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 326 0 0 chr12 1224798 1224884 -142561571 - L1MC4 LINE L1 -1342 6700 6615 360 0 0 0 chr12 1224884 1224924 -142561531 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 1719 130 18 11 chr12 1224925 1225201 -142561254 + L1PB3 LINE L1 5783 6060 -94 2277 102 0 3 chr12 1226917 1227221 -142559234 - AluSq SINE Alu -10 303 1 2207 218 29 21 chr12 1228016 1228539 -142557916 - L1MC3 LINE L1 -1 7784 7258 22 0 0 0 chr12 1228630 1228652 -142557803 + AT_rich Low_complexity Low_complexity 1 22 0 1902 150 3 3 chr12 1229444 1229730 -142556725 + AluJb SINE Alu 6 291 -21 27 0 0 0 chr12 1229969 1229996 -142556459 + AT_rich Low_complexity Low_complexity 1 27 0 2151 111 0 0 chr12 1230236 1230524 -142555931 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr12 1230524 1230548 -142555907 + AT_rich Low_complexity Low_complexity 1 24 0 914 136 11 87 chr12 1230762 1230946 -142555509 + THE1B LTR MaLR 195 364 0 6546 152 33 28 chr12 1231736 1231979 -142554476 + L1PB1 LINE L1 3863 4103 -2048 4348 43 2 6 chr12 1231979 1232517 -142553938 + L1PA4 LINE L1 5620 6155 0 6546 152 33 28 chr12 1232517 1233821 -142552634 + L1PB1 LINE L1 4103 5398 -753 2351 85 0 0 chr12 1233821 1234114 -142552341 + AluSx SINE Alu 1 293 -19 6546 152 33 28 chr12 1234114 1234473 -142551982 + L1PB1 LINE L1 5398 5753 -398 345 100 0 0 chr12 1234473 1234523 -142551932 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1234523 1234879 -142551576 + L1PB1 LINE L1 5753 6150 -1 676 315 116 35 chr12 1235062 1235691 -142550764 + L1MC/D LINE L1 4151 4830 -1316 468 0 0 0 chr12 1235756 1235808 -142550647 + (CA)n Simple_repeat Simple_repeat 2 53 0 399 159 0 0 chr12 1235842 1235905 -142550550 + FLAM_A SINE Alu 37 99 -34 25 0 0 0 chr12 1235906 1235931 -142550524 + AT_rich Low_complexity Low_complexity 1 25 0 1848 139 0 17 chr12 1235939 1236227 -142550228 + AluSx SINE Alu 6 288 -24 1185 259 93 19 chr12 1236309 1236792 -142549663 + L1MC/D LINE L1 5276 5794 -2014 299 130 0 0 chr12 1237654 1237700 -142548755 - tRNA-Gln-CAG tRNA tRNA -29 46 1 472 197 228 0 chr12 1237710 1237837 -142548618 - MER5A DNA MER1_type -3 186 31 946 175 22 11 chr12 1238249 1238432 -142548023 - MER33 DNA MER1_type -138 186 2 1185 140 77 31 chr12 1238576 1238798 -142547657 + MER46A DNA MER2_type 1 232 -4 3055 171 11 11 chr12 1239524 1240074 -142546381 - MER44D DNA MER2_type 0 605 1 284 294 83 9 chr12 1240173 1240282 -142546173 - MIR SINE MIR -134 128 12 344 107 87 17 chr12 1240719 1241010 -142545445 + (TA)n Simple_repeat Simple_repeat 1 311 0 248 154 31 15 chr12 1241020 1241085 -142545370 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 349 109 77 13 chr12 1241096 1241252 -142545203 + (TA)n Simple_repeat Simple_repeat 1 166 0 2331 67 7 10 chr12 1241273 1241570 -142544885 - AluSx SINE Alu -16 296 1 292 306 9 54 chr12 1241627 1241738 -142544717 - MIR SINE MIR -93 169 64 2371 97 0 0 chr12 1241741 1242050 -142544405 + AluSc SINE Alu 1 309 0 226 393 98 6 chr12 1242424 1242587 -142543868 - L2 LINE L2 -457 2857 2680 * 233 350 75 12 chr12 1242577 1242657 -142543798 - L2 LINE L2 -47 3225 3141 338 176 28 65 chr12 1243207 1243238 -142543217 + L1MEd LINE L1 105 136 -6069 1258 203 128 40 chr12 1243238 1243667 -142542788 - MLT1C LTR MaLR 0 467 1 338 176 28 65 chr12 1243667 1243743 -142542712 + L1MEd LINE L1 136 208 -5997 698 185 122 70 chr12 1244054 1244110 -142542345 - Charlie1 DNA MER1_type -6 2755 2703 2278 100 3 0 chr12 1244110 1244409 -142542046 + AluSp SINE Alu 1 300 -13 698 185 122 70 chr12 1244409 1244486 -142541969 - Charlie1 DNA MER1_type -58 2703 2631 1897 141 10 36 chr12 1244486 1244792 -142541663 + AluJo SINE Alu 1 298 -14 698 185 122 70 chr12 1244792 1244927 -142541528 - Charlie1 DNA MER1_type -130 2631 2472 336 281 21 0 chr12 1244948 1245044 -142541411 + L1MEd LINE L1 618 715 -5681 * 2147 229 105 52 chr12 1245029 1246054 -142540401 - L1M4b LINE L1 -3060 3584 2528 2224 112 0 3 chr12 1246054 1246367 -142540088 - AluSx SINE Alu 0 312 1 2147 229 105 52 chr12 1246367 1246479 -142539976 - L1M4b LINE L1 -4116 2528 2423 785 260 0 0 chr12 1246511 1246684 -142539771 - FRAM SINE Alu -6 170 1 1488 280 58 42 chr12 1246697 1246897 -142539558 - L1M4b LINE L1 -4392 2433 2238 1583 177 10 45 chr12 1246897 1247207 -142539248 - AluJb SINE Alu -13 299 1 1488 280 58 42 chr12 1247207 1247927 -142538528 - L1M4b LINE L1 -4587 2238 1459 2213 84 47 0 chr12 1247927 1248225 -142538230 + AluSp SINE Alu 1 312 -1 1488 280 58 42 chr12 1248225 1248284 -142538171 - L1M4b LINE L1 -5366 1459 1402 1065 210 0 15 chr12 1248293 1248488 -142537967 - AluJb SINE Alu -24 288 97 339 268 95 14 chr12 1248505 1248715 -142537740 - L1M4b LINE L1 -5246 1296 1063 294 239 54 43 chr12 1249517 1249609 -142536846 - MIR SINE MIR -70 192 100 2385 60 0 57 chr12 1250981 1251147 -142535308 - AluSq SINE Alu -14 299 125 234 0 0 0 chr12 1251147 1251173 -142535282 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2304 71 4 0 chr12 1251173 1251454 -142535001 - AluY SINE Alu -29 282 1 2385 60 0 57 chr12 1251454 1251466 -142534989 - AluSq SINE Alu -187 126 115 2366 88 3 0 chr12 1251466 1251762 -142534693 - AluSg SINE Alu -13 297 1 2385 60 0 57 chr12 1251762 1251898 -142534557 - AluSq SINE Alu -198 115 1 21 36 0 0 chr12 1252200 1252228 -142534227 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 1252409 1252439 -142534016 + AT_rich Low_complexity Low_complexity 1 30 0 227 230 115 35 chr12 1254170 1254257 -142532198 + L1MC5 LINE L1 7833 7926 -35 223 161 21 32 chr12 1255363 1255456 -142530999 + (TA)n Simple_repeat Simple_repeat 1 92 0 423 0 0 0 chr12 1255495 1255542 -142530913 + (TG)n Simple_repeat Simple_repeat 2 48 0 991 99 0 0 chr12 1256212 1256343 -142530112 + AluSq/x SINE Alu 1 131 -181 517 128 0 0 chr12 1256591 1256677 -142529778 - L1M4 LINE L1 -1447 4699 4614 1572 214 53 69 chr12 1256745 1257269 -142529186 - MLT2B1 LTR ERVL -4 516 1 761 241 118 14 chr12 1257323 1257671 -142528784 - L1M4 LINE L1 -1103 5043 4660 758 298 84 69 chr12 1257975 1258310 -142528145 - L1M4 LINE L1 -1947 4199 3870 2086 119 0 0 chr12 1258310 1258587 -142527868 - AluSx SINE Alu -7 305 29 758 298 84 69 chr12 1258587 1259261 -142527194 - L1M4 LINE L1 -2276 3870 3175 6083 114 22 39 chr12 1259532 1259697 -142526758 + L1MA4 LINE L1 5274 5440 -860 1227 178 170 0 chr12 1259697 1259938 -142526517 + AluJo SINE Alu 1 282 -30 6083 114 22 39 chr12 1259938 1260317 -142526138 + L1MA4 LINE L1 5440 5824 -476 396 0 0 0 chr12 1260317 1260361 -142526094 + (CA)n Simple_repeat Simple_repeat 2 45 0 6083 114 22 39 chr12 1260361 1260853 -142525602 + L1MA4 LINE L1 5824 6295 -5 741 260 61 22 chr12 1262180 1262433 -142524022 - MIR SINE MIR 0 262 2 259 243 14 27 chr12 1263854 1263928 -142522527 + (TG)n Simple_repeat Simple_repeat 1 73 0 264 359 61 8 chr12 1264028 1264155 -142522300 - MIR SINE MIR -73 135 27 2297 92 0 22 chr12 1264633 1264947 -142521508 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr12 1264947 1264968 -142521487 + AT_rich Low_complexity Low_complexity 1 21 0 556 293 39 85 chr12 1267855 1268088 -142518367 - L2 LINE L2 0 3313 3098 2372 76 3 10 chr12 1268088 1268402 -142518053 + AluSx SINE Alu 1 312 0 556 293 39 85 chr12 1268402 1268499 -142517956 - L2 LINE L2 -215 3098 2998 1084 112 25 6 chr12 1268762 1268923 -142517532 + MSTB1 LTR MaLR 269 432 0 473 318 115 75 chr12 1268924 1269178 -142517277 + L2 LINE L2 2422 2703 -611 1842 111 0 0 chr12 1269178 1269421 -142517034 - AluSx SINE Alu -69 243 1 473 318 115 75 chr12 1269421 1269609 -142516846 + L2 LINE L2 2703 2882 -432 433 342 98 52 chr12 1269628 1269836 -142516619 + L2 LINE L2 2845 3042 -271 1996 155 0 0 chr12 1269836 1270162 -142516293 + AluSg SINE Alu 1 310 0 433 342 98 52 chr12 1270162 1270400 -142516055 + L2 LINE L2 3042 3312 -1 231 114 0 0 chr12 1270872 1270907 -142515548 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 880 220 40 0 chr12 1270921 1271121 -142515334 - MER3 DNA MER1_type -1 208 1 291 319 39 28 chr12 1271229 1271411 -142515044 - L1MC4a LINE L1 -1081 6727 6544 2204 128 0 0 chr12 1271654 1271959 -142514496 - AluSg SINE Alu -5 305 1 458 293 144 13 chr12 1272369 1272598 -142513857 - MIR SINE MIR 0 262 4 335 339 35 29 chr12 1272757 1272928 -142513527 - L2 LINE L2 -906 2408 2237 695 204 98 0 chr12 1272928 1273060 -142513395 + FAM SINE Alu 14 158 -27 454 345 43 5 chr12 1273134 1273343 -142513112 + L2 LINE L2 2359 2575 -739 2337 194 74 60 chr12 1273516 1274121 -142512334 - Charlie2 DNA MER1_type -73 2789 2167 2014 118 7 7 chr12 1274121 1274410 -142512045 + AluSx SINE Alu 3 291 -21 2337 194 74 60 chr12 1274410 1274658 -142511797 - Charlie2 DNA MER1_type -695 2167 1924 603 284 186 18 chr12 1274679 1274954 -142511501 - Charlie2 DNA MER1_type -2536 326 6 567 297 117 51 chr12 1274959 1275558 -142510897 + L2 LINE L2 2605 3313 0 1314 103 0 0 chr12 1275841 1276016 -142510439 - AluY SINE Alu -10 301 127 329 331 24 116 chr12 1276030 1276281 -142510174 + L2 LINE L2 3029 3256 -16 1655 181 0 14 chr12 1276859 1277151 -142509304 - AluJo SINE Alu -24 288 1 2499 87 0 0 chr12 1277922 1278234 -142508221 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 1278246 1278267 -142508188 + AT_rich Low_complexity Low_complexity 1 21 0 3514 178 64 13 chr12 1278463 1279210 -142507245 + L1MC2 LINE L1 5549 6333 -11 2634 24 0 7 chr12 1279948 1280246 -142506209 - AluY SINE Alu -15 296 1 2332 102 0 6 chr12 1280637 1280951 -142505504 + AluSq SINE Alu 1 312 -1 300 27 0 0 chr12 1282932 1282969 -142503486 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1382 238 173 65 chr12 1284238 1284804 -142501651 + HAL1 LINE L1 1402 1905 -602 2418 81 3 7 chr12 1284804 1285114 -142501341 + AluSg SINE Alu 1 309 -1 1382 238 173 65 chr12 1285114 1285545 -142500910 + HAL1 LINE L1 1905 2507 0 1425 167 75 3 chr12 1286578 1286872 -142499583 + MER33 DNA MER1_type 2 316 -8 1656 249 111 16 chr12 1287189 1287684 -142498771 - MLT1F LTR MaLR 0 542 1 695 107 52 68 chr12 1288379 1288417 -142498038 + L1MA9 LINE L1 6104 6141 -171 6606 74 9 3 chr12 1288417 1288703 -142497752 + L1PA7 LINE L1 5187 5470 -684 2466 50 0 23 chr12 1288703 1289005 -142497450 + AluY SINE Alu 16 310 -1 6606 74 9 3 chr12 1289005 1289681 -142496774 + L1PA7 LINE L1 5470 6154 0 695 107 52 68 chr12 1289681 1289834 -142496621 + L1MA9 LINE L1 6141 6299 -13 1873 138 3 3 chr12 1289834 1290123 -142496332 + AluSx SINE Alu 21 309 -3 695 107 52 68 chr12 1290123 1290137 -142496318 + L1MA9 LINE L1 6299 6312 0 292 51 0 0 chr12 1290154 1290193 -142496262 - MADE1 DNA Mariner 0 80 42 2257 102 3 0 chr12 1290937 1291232 -142495223 - AluSp SINE Alu -17 296 1 1075 216 0 0 chr12 1292401 1292619 -142493836 + L1MA4 LINE L1 6069 6286 -14 26 30 0 0 chr12 1292620 1292653 -142493802 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr12 1294046 1294084 -142492371 + AT_rich Low_complexity Low_complexity 1 38 0 2399 133 6 3 chr12 1294589 1294943 -142491512 + MLT1A1 LTR MaLR 9 363 -2 1555 155 11 33 chr12 1295459 1295730 -142490725 + AluJo SINE Alu 24 288 -24 24 0 0 0 chr12 1295730 1295754 -142490701 + AT_rich Low_complexity Low_complexity 1 24 0 246 370 22 11 chr12 1295778 1295870 -142490585 + L2 LINE L2 3144 3236 -36 239 309 120 46 chr12 1295904 1296079 -142490376 + L2 LINE L2 2649 2836 -478 656 275 85 43 chr12 1296125 1296430 -142490025 + L2 LINE L2 2995 3312 -1 2264 103 3 0 chr12 1296611 1296912 -142489543 - AluSp SINE Alu -11 302 1 2412 237 68 58 chr12 1297146 1297380 -142489075 - L1MC4a LINE L1 -1 7807 7577 787 227 152 19 chr12 1297380 1297644 -142488811 - AluJb SINE Alu -2 300 2 2412 237 68 58 chr12 1297644 1298302 -142488153 - L1MC4a LINE L1 -231 7577 6906 552 263 66 14 chr12 1298310 1298523 -142487932 - L1MC4a LINE L1 -1988 5820 5597 300 147 21 126 chr12 1298527 1298556 -142487899 + Charlie1 DNA MER1_type 2670 2700 -61 838 124 0 29 chr12 1298556 1298693 -142487762 + FLAM_C SINE Alu 1 133 0 300 147 21 126 chr12 1298693 1298758 -142487697 + Charlie1 DNA MER1_type 2700 2754 -7 345 226 65 19 chr12 1299158 1299313 -142487142 + L1ME3A LINE L1 5804 5965 -205 1698 149 29 18 chr12 1299808 1300129 -142486326 + AluSx SINE Alu 1 324 0 691 221 91 5 chr12 1300803 1301002 -142485453 - MER20 DNA MER1_type -3 216 1 1254 203 86 52 chr12 1301262 1301403 -142485052 + MER2 DNA MER2_type 9 144 -201 2891 16 0 0 chr12 1301403 1301721 -142484734 - AluYb8 SINE Alu 0 318 1 1254 203 86 52 chr12 1301721 1301905 -142484550 + MER2 DNA MER2_type 144 345 0 203 160 100 0 chr12 1301959 1302009 -142484446 - MIR SINE MIR -50 212 158 1955 97 48 14 chr12 1302493 1302782 -142483673 + AluSx SINE Alu 14 312 0 23 0 0 0 chr12 1303884 1303907 -142482548 + AT_rich Low_complexity Low_complexity 1 23 0 289 196 161 42 chr12 1304247 1304390 -142482065 - L1MC5 LINE L1 -44 7917 7758 479 217 21 146 chr12 1304453 1304626 -142481829 - L1MC4 LINE L1 -1015 7012 6810 758 242 21 11 chr12 1304626 1304812 -142481643 + MER5A DNA MER1_type 1 188 -1 479 217 21 146 chr12 1304812 1304878 -142481577 - L1MC4 LINE L1 -1217 6810 6737 1257 217 37 10 chr12 1304881 1305181 -142481274 - AluJo SINE Alu -4 308 1 1028 171 239 13 chr12 1305271 1305531 -142480924 + AluJo SINE Alu 1 302 0 278 267 0 17 chr12 1305550 1305610 -142480845 - MIR SINE MIR -129 79 21 189 306 61 61 chr12 1305685 1305832 -142480623 + MIR SINE MIR 66 212 -50 357 345 36 12 chr12 1306899 1307064 -142479391 + MIR SINE MIR 20 188 -74 316 281 12 0 chr12 1307278 1307360 -142479095 + GA-rich Low_complexity Low_complexity 3 85 0 687 303 90 23 chr12 1308677 1309253 -142477202 - L1ME LINE L1 -375 5787 5150 1618 188 35 0 chr12 1309253 1309540 -142476915 - AluJb SINE Alu -15 297 1 687 303 90 23 chr12 1309540 1309648 -142476807 - L1ME LINE L1 -1012 5150 5051 395 320 46 5 chr12 1309863 1310057 -142476398 - L1ME LINE L1 -1335 4811 4610 1041 186 32 6 chr12 1310179 1310464 -142475991 - MER47B DNA MER2_type 0 418 29 557 257 72 64 chr12 1310580 1311078 -142475377 - L1MC5 LINE L1 -195 7766 7265 2258 119 0 0 chr12 1311133 1311436 -142475019 - AluSx SINE Alu -7 305 3 4078 232 80 74 chr12 1311764 1312589 -142473866 + L1MA9 LINE L1 2109 2928 -4637 2205 93 3 3 chr12 1312589 1312879 -142473576 + AluY SINE Alu 2 291 -20 4078 232 80 74 chr12 1312879 1314328 -142472127 + L1MA9 LINE L1 2928 4392 -3173 2222 102 27 0 chr12 1314328 1314622 -142471833 + AluSx SINE Alu 1 302 -10 4078 232 80 74 chr12 1314622 1315096 -142471359 + L1MA9 LINE L1 4392 4862 -2703 1293 194 38 19 chr12 1315121 1315384 -142471071 - AluJo SINE Alu -21 291 24 4046 182 44 9 chr12 1315418 1316275 -142470180 + L1MA9 LINE L1 4873 5759 -1806 4954 139 58 45 chr12 1316282 1317650 -142468805 + L1MA9 LINE L1 5858 7326 -405 2032 142 7 0 chr12 1317650 1317945 -142468510 + AluSx SINE Alu 1 297 -15 4954 139 58 45 chr12 1317945 1318357 -142468098 + L1MA9 LINE L1 7326 7731 0 396 0 0 0 chr12 1319133 1319177 -142467278 + (TG)n Simple_repeat Simple_repeat 2 45 0 1601 178 44 0 chr12 1319179 1319449 -142467006 - AluJo SINE Alu -30 282 1 1790 164 39 32 chr12 1319618 1319928 -142466527 - AluJo SINE Alu 0 312 1 21 36 0 0 chr12 1319984 1320012 -142466443 + AT_rich Low_complexity Low_complexity 1 28 0 220 200 0 0 chr12 1320339 1320379 -142466076 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 331 173 0 chr12 1321084 1321223 -142465232 + MER5A DNA MER1_type 12 174 -15 274 273 0 0 chr12 1321521 1321587 -142464868 + L2 LINE L2 3245 3310 -3 1973 119 51 10 chr12 1322112 1322407 -142464048 + AluSx SINE Alu 1 307 -5 1297 187 78 33 chr12 1322423 1322754 -142463701 + MER7A DNA MER2_type 2 345 -1 894 286 95 14 chr12 1323397 1323754 -142462701 - L2 LINE L2 -3 3310 2925 593 247 181 0 chr12 1323823 1324005 -142462450 - MER58C DNA MER1_type 0 215 1 498 304 217 34 chr12 1324229 1324730 -142461725 - L2 LINE L2 -3 3310 2720 1288 148 10 5 chr12 1324789 1324991 -142461464 + AluJb SINE Alu 100 302 -10 2493 318 100 35 chr12 1324997 1325454 -142461001 - L2 LINE L2 -620 2694 2268 2339 105 0 0 chr12 1325454 1325749 -142460706 + AluSx SINE Alu 1 295 -17 2493 318 100 35 chr12 1325749 1327009 -142459446 - L2 LINE L2 -1046 2268 866 475 355 56 21 chr12 1329660 1329894 -142456561 + MIR SINE MIR 6 247 -15 348 24 0 0 chr12 1329924 1329965 -142456490 + (TG)n Simple_repeat Simple_repeat 2 42 0 26 64 0 0 chr12 1329977 1330024 -142456431 + AT_rich Low_complexity Low_complexity 1 47 0 216 319 113 34 chr12 1330179 1330417 -142456038 - MIR SINE MIR -1 261 5 1144 139 6 0 chr12 1330696 1330869 -142455586 - AluSg/x SINE Alu -2 310 137 2070 136 0 3 chr12 1330871 1331172 -142455283 - AluSx SINE Alu -12 300 1 2153 128 21 3 chr12 1331751 1332088 -142454367 + MER61A LTR ERV1 1 343 0 2076 126 0 32 chr12 1332757 1333066 -142453389 + AluSq SINE Alu 1 299 -14 2232 77 7 3 chr12 1333179 1333465 -142452990 + AluSp SINE Alu 1 287 -26 2123 105 31 3 chr12 1333627 1333913 -142452542 - AluSc SINE Alu -15 294 1 391 260 182 13 chr12 1334855 1335009 -142451446 + MER5A DNA MER1_type 10 189 0 2282 105 0 0 chr12 1335374 1335669 -142450786 + AluSx SINE Alu 17 311 -1 1162 93 6 47 chr12 1335671 1335843 -142450612 + AluSq SINE Alu 136 300 -13 1287 129 53 31 chr12 1336161 1336386 -142450069 + MER30 DNA MER1_type 1 230 0 466 321 49 16 chr12 1336417 1336601 -142449854 + MIR SINE MIR 34 223 -39 414 105 92 0 chr12 1336695 1336771 -142449684 - MER53 DNA DNA -106 83 1 801 100 77 8 chr12 1337616 1337746 -142448709 - MER85 DNA T2_type 0 139 1 221 287 35 0 chr12 1338224 1338307 -142448148 - MIR SINE MIR -98 164 79 351 203 0 0 chr12 1339188 1339267 -142447188 + (TA)n Simple_repeat Simple_repeat 1 79 0 352 278 91 32 chr12 1339422 1339609 -142446846 + MIR SINE MIR 65 262 0 2254 91 0 0 chr12 1341269 1341556 -142444899 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr12 1341880 1341903 -142444552 + AT_rich Low_complexity Low_complexity 1 23 0 1908 169 7 0 chr12 1341955 1342251 -142444204 - AluJb SINE Alu -14 298 1 399 175 29 29 chr12 1343327 1343430 -142443025 - MER104 DNA Tc2 -47 133 31 236 243 14 14 chr12 1343597 1343671 -142442784 + (TA)n Simple_repeat Simple_repeat 2 75 0 2498 56 0 0 chr12 1343769 1344073 -142442382 + AluY SINE Alu 1 304 -7 2279 97 0 26 chr12 1344827 1345138 -142441317 - AluSq SINE Alu -10 303 1 726 87 0 0 chr12 1345293 1345396 -142441059 + MSTA LTR MaLR 1 103 -325 615 71 0 0 chr12 1345398 1345483 -142440972 + MSTA LTR MaLR 19 103 -325 618 71 0 0 chr12 1345485 1345570 -142440885 + MSTA LTR MaLR 19 103 -325 594 94 0 0 chr12 1345572 1345657 -142440798 + MSTA LTR MaLR 19 103 -325 2213 113 87 8 chr12 1345659 1346039 -142440416 + MSTA LTR MaLR 19 428 0 1760 168 14 7 chr12 1346399 1346690 -142439765 + AluJb SINE Alu 1 293 -19 219 36 0 0 chr12 1346696 1346724 -142439731 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 188 301 68 27 chr12 1347249 1347322 -142439133 + MIR SINE MIR 36 111 -151 2190 138 0 0 chr12 1347346 1347650 -142438805 + AluSx SINE Alu 1 304 -8 513 0 0 0 chr12 1347664 1347721 -142438734 + (TG)n Simple_repeat Simple_repeat 2 58 0 594 91 0 0 chr12 1347721 1347820 -142438635 + (GA)n Simple_repeat Simple_repeat 2 100 0 1748 169 24 3 chr12 1347839 1348129 -142438326 + AluJb SINE Alu 3 298 -14 436 285 76 37 chr12 1348769 1349208 -142437247 - MLT1L LTR MaLR 0 615 116 786 175 27 33 chr12 1349331 1349514 -142436941 + L1ME1 LINE L1 5976 6157 -9 214 277 0 62 chr12 1349561 1349626 -142436829 + L2 LINE L2 3003 3063 -250 203 61 30 0 chr12 1350165 1350198 -142436257 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2304 90 0 3 chr12 1350200 1350489 -142435966 - AluSx SINE Alu -24 288 1 683 261 19 97 chr12 1350688 1351060 -142435395 + MLT2C1 LTR ERVL 4 346 -51 23 0 0 0 chr12 1351073 1351096 -142435359 + AT_rich Low_complexity Low_complexity 1 23 0 282 233 0 0 chr12 1351111 1351197 -142435258 + (TATG)n Simple_repeat Simple_repeat 2 87 0 326 289 107 0 chr12 1352521 1352642 -142433813 + MIR3 SINE MIR 10 143 -65 1380 239 75 19 chr12 1354365 1354738 -142431717 + MSTD LTR MaLR 2 395 -1 194 229 42 0 chr12 1355484 1355532 -142430923 + MER5A DNA MER1_type 52 101 -88 759 205 86 0 chr12 1355872 1356023 -142430432 - FAM SINE Alu -11 174 11 306 0 0 0 chr12 1357855 1357889 -142428566 + (CA)n Simple_repeat Simple_repeat 2 35 0 1847 155 24 3 chr12 1357889 1358179 -142428276 - AluJb SINE Alu -16 296 1 250 226 129 77 chr12 1358569 1358683 -142427772 + MER103 DNA DNA 3 129 -37 1071 155 89 118 chr12 1358683 1359031 -142427424 + MER58B DNA MER1_type 1 338 -3 250 226 129 77 chr12 1359031 1359071 -142427384 + MER103 DNA DNA 129 165 -1 1564 141 36 0 chr12 1359183 1359431 -142427024 + AluSx SINE Alu 23 279 -33 210 265 10 78 chr12 1359503 1359567 -142426888 - MIR SINE MIR -4 258 202 2063 133 3 0 chr12 1359567 1359861 -142426594 - AluSq SINE Alu -18 295 1 210 265 10 78 chr12 1359861 1359898 -142426557 - MIR SINE MIR -60 202 164 539 326 150 11 chr12 1359904 1360370 -142426085 - L2 LINE L2 -1005 2309 1779 337 270 80 135 chr12 1360388 1360751 -142425704 - L3 LINE CR1 -3 1574 1232 2633 58 0 0 chr12 1360773 1361084 -142425371 + AluY SINE Alu 1 311 0 193 200 0 25 chr12 1361804 1361844 -142424611 - L2 LINE L2 -9 3263 3225 554 221 0 7 chr12 1362197 1362342 -142424113 + L1MC/D LINE L1 5184 5327 -819 443 113 0 0 chr12 1362348 1362419 -142424036 + L1MA5A LINE L1 6222 6292 -5 1812 148 38 1 chr12 1362436 1362800 -142423655 + L1MC/D LINE L1 5290 5667 -501 2809 137 11 9 chr12 1362954 1363408 -142423047 + MSTB2 LTR MaLR 3 457 0 2209 87 13 13 chr12 1364422 1364721 -142421734 - AluSg SINE Alu -11 299 1 2144 96 3 23 chr12 1365396 1365698 -142420757 - AluSq SINE Alu -17 296 1 2154 112 3 0 chr12 1366107 1366401 -142420054 - AluSx SINE Alu -17 295 1 992 121 23 0 chr12 1366587 1366761 -142419694 + L1MA8 LINE L1 6112 6289 -2 228 91 0 0 chr12 1366813 1366846 -142419609 - U2 snRNA snRNA -155 33 1 2751 10 0 0 chr12 1367141 1367442 -142419013 - AluYb8 SINE Alu -17 301 1 198 0 0 0 chr12 1367921 1367943 -142418512 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 344 299 123 21 chr12 1368149 1368433 -142418022 + HAL1b LINE L1 494 806 -542 261 222 209 0 chr12 1368557 1368620 -142417835 + HAL1b LINE L1 961 1010 -338 2446 63 0 10 chr12 1368620 1368922 -142417533 + AluY SINE Alu 1 299 -12 261 222 209 0 chr12 1368922 1369011 -142417444 + HAL1b LINE L1 1010 1145 -203 288 309 0 8 chr12 1369014 1369140 -142417315 + HAL1b LINE L1 1193 1317 -31 430 319 33 42 chr12 1369206 1369419 -142417036 + MIR SINE MIR 46 256 -6 2352 72 7 0 chr12 1369962 1370253 -142416202 + AluY SINE Alu 1 293 -18 185 364 18 0 chr12 1371192 1371247 -142415208 + L2 LINE L2 2679 2734 -580 2509 73 0 13 chr12 1371605 1371920 -142414535 - AluSx SINE Alu -1 311 1 25 31 0 0 chr12 1372015 1372047 -142414408 + AT_rich Low_complexity Low_complexity 1 32 0 3903 54 6 8 chr12 1372277 1372776 -142413679 - L1PA6 LINE L1 -2 6152 5655 1839 86 0 16 chr12 1372776 1373021 -142413434 + AluSc SINE Alu 69 309 0 740 173 0 16 chr12 1373203 1373330 -142413125 + FLAM_C SINE Alu 1 125 -18 17664 172 22 82 chr12 1373349 1376987 -142409468 + L1PA13 LINE L1 8 3863 -2951 1957 138 24 0 chr12 1376987 1377116 -142409339 + AluSx SINE Alu 1 125 -187 195 42 0 0 chr12 1377116 1377140 -142409315 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1377140 1377299 -142409156 + AluSx SINE Alu 125 296 -16 17664 172 22 82 chr12 1377299 1378188 -142408267 + L1PA13 LINE L1 3863 4804 -2010 288 0 0 0 chr12 1378188 1378220 -142408235 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 17664 172 22 82 chr12 1378220 1380472 -142405983 + L1PA13 LINE L1 4804 6331 -483 2466 77 0 0 chr12 1380472 1380772 -142405683 + AluSc SINE Alu 1 300 -9 17664 172 22 82 chr12 1380772 1381225 -142405230 + L1PA13 LINE L1 6331 6810 -4 351 273 106 42 chr12 1381632 1382087 -142404368 + HAL1 LINE L1 823 1306 -1201 1062 275 29 52 chr12 1382617 1383100 -142403355 + L1ME3A LINE L1 5694 6165 -5 360 258 70 51 chr12 1383148 1383404 -142403051 + L1MEd LINE L1 969 1229 -4890 243 295 0 0 chr12 1383457 1383518 -142402937 + GA-rich Low_complexity Low_complexity 3 63 0 198 0 0 0 chr12 1383638 1383660 -142402795 + (TAA)n Simple_repeat Simple_repeat 2 23 0 202 311 137 26 chr12 1384234 1384424 -142402031 + L2 LINE L2 2456 2666 -648 310 273 30 0 chr12 1384519 1384618 -142401837 + MIR SINE MIR 119 220 -42 2321 98 3 3 chr12 1384786 1385091 -142401364 - AluSx SINE Alu -7 305 1 414 314 117 89 chr12 1385464 1385659 -142400796 - L2 LINE L2 -440 2874 2686 1568 201 18 7 chr12 1385659 1385942 -142400513 + AluJb SINE Alu 1 286 -26 200 31 62 0 chr12 1385946 1385978 -142400477 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 414 314 117 89 chr12 1385978 1386596 -142399859 - L2 LINE L2 -630 2684 2033 273 333 17 11 chr12 1391666 1391783 -142394672 + MIR SINE MIR 7 129 -79 329 264 145 0 chr12 1391809 1391968 -142394487 - MIR SINE MIR -6 256 75 297 324 37 22 chr12 1392774 1392910 -142393545 - MIR SINE MIR -23 239 102 2538 65 0 0 chr12 1393102 1393408 -142393047 + AluY SINE Alu 1 306 -5 368 200 98 166 chr12 1393408 1393673 -142392782 + L1MC4a LINE L1 5581 5827 -1981 491 318 49 28 chr12 1393706 1394179 -142392276 + L1MC4a LINE L1 5467 5824 -297 5404 33 5 17 chr12 1396542 1396914 -142389541 - L1PA7 LINE L1 -3 6151 5789 2450 90 0 3 chr12 1396914 1397225 -142389230 - AluSq SINE Alu -3 310 1 5404 33 5 17 chr12 1397225 1397516 -142388939 - L1PA7 LINE L1 -365 5789 5496 31 0 0 0 chr12 1397617 1397648 -142388807 + AT_rich Low_complexity Low_complexity 1 31 0 2119 87 17 3 chr12 1397916 1398205 -142388250 + AluY SINE Alu 1 293 -18 240 100 0 0 chr12 1398351 1398391 -142388064 + (TC)n Simple_repeat Simple_repeat 2 41 0 1854 87 0 0 chr12 1398507 1398761 -142387694 + AluSx SINE Alu 56 309 0 1636 134 13 0 chr12 1398786 1399018 -142387437 + AluSx SINE Alu 1 235 -77 213 39 0 0 chr12 1399036 1399062 -142387393 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr12 1399300 1399321 -142387134 + AT_rich Low_complexity Low_complexity 1 21 0 261 291 137 11 chr12 1399540 1399715 -142386740 - L1ME LINE L1 -468 5653 5457 262 292 0 17 chr12 1399738 1399858 -142386597 - L1ME LINE L1 -2380 5428 5311 261 304 51 0 chr12 1399860 1399939 -142386516 - MIR SINE MIR -109 153 71 31 16 0 66 chr12 1400085 1400115 -142386340 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1400115 1400397 -142386058 - AluSx SINE Alu -26 286 3 31 16 0 66 chr12 1400397 1400427 -142386028 + AT_rich Low_complexity Low_complexity 27 57 0 323 282 77 77 chr12 1400669 1401048 -142385407 + MLT1J LTR MaLR 28 406 -105 1844 136 11 0 chr12 1401444 1401709 -142384746 + AluSx SINE Alu 1 268 -44 220 306 42 14 chr12 1402870 1402942 -142383513 - MIR SINE MIR -165 97 24 1665 108 77 19 chr12 1403592 1403852 -142382603 + AluSx SINE Alu 1 275 -37 306 0 0 0 chr12 1403859 1403893 -142382562 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 680 252 33 33 chr12 1403893 1403947 -142382508 - MIR SINE MIR -38 224 171 1539 85 0 0 chr12 1403947 1404180 -142382275 + AluY SINE Alu 92 324 0 680 252 33 33 chr12 1404180 1404334 -142382121 - MIR SINE MIR -90 172 15 22 0 0 0 chr12 1404366 1404388 -142382067 + AT_rich Low_complexity Low_complexity 1 22 0 1484 227 146 25 chr12 1404714 1404918 -142381537 + MER119 DNA MER1_type 1 179 -404 2024 183 5 11 chr12 1404918 1405285 -142381170 - MLT1A1 LTR MaLR 0 365 1 1484 227 146 25 chr12 1405285 1405600 -142380855 + MER119 DNA MER1_type 179 583 0 246 62 0 0 chr12 1405869 1405901 -142380554 + (TAA)n Simple_repeat Simple_repeat 2 33 0 180 97 0 0 chr12 1407348 1407379 -142379076 + (A)n Simple_repeat Simple_repeat 1 31 0 2414 50 30 0 chr12 1409023 1409323 -142377132 + AluY SINE Alu 1 309 -2 2362 83 10 0 chr12 1410129 1410429 -142376026 - AluSp SINE Alu -10 303 1 2336 84 0 10 chr12 1410439 1410748 -142375707 - AluY SINE Alu -5 306 1 2766 134 18 26 chr12 1410748 1411129 -142375326 + Tigger1 DNA MER2_type 1922 2300 -118 1722 156 21 3 chr12 1411129 1411417 -142375038 - AluJo SINE Alu -19 293 1 2766 134 18 26 chr12 1411417 1411535 -142374920 + Tigger1 DNA MER2_type 2300 2417 -1 1734 280 54 7 chr12 1411544 1412265 -142374190 - L1M4 LINE L1 -1917 4229 3475 3165 110 21 14 chr12 1412269 1412752 -142373703 - L1PA13 LINE L1 0 6163 5678 2019 154 11 14 chr12 1412753 1413123 -142373332 - L1PB3 LINE L1 -3 6151 5783 3796 136 23 2 chr12 1413124 1414129 -142372326 - L1PB3 LINE L1 -490 5673 4649 557 255 89 22 chr12 1414128 1414399 -142372056 - L1M4 LINE L1 -2655 3491 3203 * 1127 133 126 69 chr12 1414485 1414593 -142371862 + L1MA8 LINE L1 5954 6054 -237 2285 107 0 3 chr12 1414593 1414901 -142371554 + AluSx SINE Alu 1 307 -5 1127 133 126 69 chr12 1414901 1415109 -142371346 + L1MA8 LINE L1 6054 6288 -3 225 0 0 0 chr12 1415572 1415597 -142370858 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 427 281 124 47 chr12 1416810 1416925 -142369530 - L1ME4a LINE L1 0 6121 6016 2297 81 34 0 chr12 1416925 1417223 -142369232 + AluY SINE Alu 1 308 -3 427 281 124 47 chr12 1417223 1417406 -142369049 - L1ME4a LINE L1 -105 6016 5800 2166 118 0 0 chr12 1417896 1418200 -142368255 + AluSx SINE Alu 1 304 -8 2188 111 3 7 chr12 1418763 1419060 -142367395 + AluSx SINE Alu 1 296 -16 1892 141 11 4 chr12 1419178 1419455 -142367000 + AluSx SINE Alu 1 279 -33 612 0 0 0 chr12 1419455 1419523 -142366932 + (CA)n Simple_repeat Simple_repeat 1 68 0 610 107 0 39 chr12 1419525 1419618 -142366837 + FLAM_A SINE Alu 43 133 -178 2579 48 0 6 chr12 1419618 1419930 -142366525 + AluY SINE Alu 1 310 -1 544 110 90 0 chr12 1419991 1420091 -142366364 + L1MA4 LINE L1 6163 6271 -29 22 0 0 0 chr12 1421146 1421168 -142365287 + AT_rich Low_complexity Low_complexity 1 22 0 1864 159 3 14 chr12 1421168 1421464 -142364991 - AluJb SINE Alu -19 293 1 180 0 0 0 chr12 1422349 1422369 -142364086 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 240 111 0 0 chr12 1423932 1423968 -142362487 + (TG)n Simple_repeat Simple_repeat 2 37 0 683 70 0 50 chr12 1426123 1426223 -142360232 - AluJb SINE Alu -8 304 210 358 289 10 0 chr12 1427342 1427446 -142359009 + MIR SINE MIR 1 105 -157 180 196 0 43 chr12 1427482 1427528 -142358927 + MIR SINE MIR 219 262 0 184 200 308 0 chr12 1427542 1427607 -142358848 + MIR SINE MIR 123 207 -55 569 241 59 3 chr12 1427755 1427963 -142358492 + MER58B DNA MER1_type 14 295 -46 1259 171 96 20 chr12 1427972 1428223 -142358232 + AluJo SINE Alu 28 297 -15 253 331 33 33 chr12 1428837 1428958 -142357497 - MIR3 SINE MIR -13 195 75 2261 104 0 7 chr12 1429444 1429742 -142356713 + AluSx SINE Alu 1 296 -16 1249 222 53 25 chr12 1429748 1430248 -142356207 + MLT1F LTR MaLR 26 542 0 257 284 0 0 chr12 1430348 1430415 -142356040 + L2 LINE L2 2981 3047 -225 237 278 153 0 chr12 1430515 1430587 -142355868 + L2 LINE L2 3186 3268 -4 458 287 25 18 chr12 1432285 1432455 -142354000 - MIR SINE MIR -12 250 81 2223 106 3 7 chr12 1433719 1434021 -142352434 + AluSq SINE Alu 1 301 -12 270 222 0 32 chr12 1434178 1434241 -142352214 - MIR SINE MIR -98 164 104 998 8 8 0 chr12 1435211 1435330 -142351125 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 222 118 0 0 chr12 1436068 1436102 -142350353 + (CA)n Simple_repeat Simple_repeat 2 35 0 1126 290 19 17 chr12 1436246 1436712 -142349743 + L1M4 LINE L1 2345 2811 -3335 1350 199 16 26 chr12 1436716 1437120 -142349335 - MER93b LTR ERV1 0 373 17 3305 149 26 26 chr12 1437142 1437804 -142348651 + L1MA5 LINE L1 5374 6035 -265 924 164 72 125 chr12 1437804 1438108 -142348347 + LTR8A LTR ERV1 1 288 -439 1988 100 0 37 chr12 1438118 1438388 -142348067 - AluSc SINE Alu -49 260 1 1345 189 65 92 chr12 1438442 1438886 -142347569 + LTR8A LTR ERV1 290 721 -6 1338 138 40 4 chr12 1438889 1439142 -142347313 + L1MA5 LINE L1 6037 6298 -2 2233 109 0 0 chr12 1439369 1439688 -142346767 + AluY SINE Alu 1 311 0 1047 130 6 0 chr12 1440304 1440473 -142345982 - L1MB2 LINE L1 -7 6164 5995 904 175 102 84 chr12 1441021 1441110 -142345345 - MER39 LTR ERV1 -59 648 562 1794 147 0 11 chr12 1441110 1441395 -142345060 + AluJo SINE Alu 1 282 -30 1198 44 19 0 chr12 1441398 1441558 -142344897 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 904 175 102 84 chr12 1441558 1441846 -142344609 - MER39 LTR ERV1 -146 561 260 353 212 30 30 chr12 1441822 1441921 -142344534 - LTR48B LTR ERV1 -545 99 1 * 645 296 13 52 chr12 1442027 1442260 -142344195 + MIR SINE MIR 37 260 -2 2271 116 0 3 chr12 1442325 1442626 -142343829 - AluSx SINE Alu -12 300 1 635 187 37 86 chr12 1443244 1443431 -142343024 - MIR SINE MIR -2 260 83 351 241 76 12 chr12 1444068 1444236 -142342219 + MIR SINE MIR 4 256 -6 210 37 0 0 chr12 1445252 1445279 -142341176 + (CA)n Simple_repeat Simple_repeat 2 28 0 440 252 45 18 chr12 1445282 1445393 -142341062 - L2 LINE L2 -17 3296 3183 238 211 18 18 chr12 1445393 1445450 -142341005 + GA-rich Low_complexity Low_complexity 1 57 0 1444 191 21 50 chr12 1445593 1445913 -142340542 + MLT1A1 LTR MaLR 1 310 -55 2018 132 12 21 chr12 1445913 1446253 -142340202 + MER1B DNA MER1_type 1 337 0 1444 191 21 50 chr12 1446253 1446308 -142340147 + MLT1A1 LTR MaLR 310 365 0 1994 144 6 10 chr12 1446500 1446812 -142339643 - AluSx SINE Alu -1 311 1 213 219 110 68 chr12 1447135 1447208 -142339247 + MIR3 SINE MIR 88 163 -45 220 234 0 0 chr12 1447226 1447273 -142339182 - MIR SINE MIR -6 256 210 778 297 33 0 chr12 1447307 1447519 -142338936 - MIR SINE MIR -31 231 13 465 326 21 0 chr12 1447537 1447678 -142338777 - MIR SINE MIR -115 147 4 1387 135 120 68 chr12 1449901 1449958 -142336497 - MER2 DNA MER2_type -2 342 289 216 97 0 0 chr12 1449958 1449989 -142336466 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1449989 1450115 -142336340 - MER2 DNA MER2_type -55 289 171 2056 131 0 0 chr12 1450115 1450419 -142336036 + AluSx SINE Alu 1 304 0 1387 135 120 68 chr12 1450419 1450558 -142335897 - MER2 DNA MER2_type -173 171 1 1068 249 69 39 chr12 1452141 1452503 -142333952 + MLT1A2 LTR MaLR 1 373 -1 27 0 0 0 chr12 1452575 1452602 -142333853 + AT_rich Low_complexity Low_complexity 1 27 0 736 144 0 0 chr12 1452602 1452713 -142333742 - FLAM_A SINE Alu -26 116 6 1288 167 13 34 chr12 1453232 1453466 -142332989 - AluJo SINE Alu -13 299 71 866 282 16 37 chr12 1453833 1454078 -142332377 + MIR SINE MIR 22 261 -1 249 211 0 0 chr12 1454139 1454196 -142332259 + (TA)n Simple_repeat Simple_repeat 2 58 0 790 149 0 45 chr12 1454221 1454355 -142332100 - FLAM_C SINE Alu -5 128 1 2171 108 3 0 chr12 1454414 1454702 -142331753 - AluSx SINE Alu -23 289 1 678 162 11 123 chr12 1454891 1454934 -142331521 + MLT1A1 LTR MaLR 1 47 -318 1966 132 3 7 chr12 1454934 1455267 -142331188 - AluSx SINE Alu 0 332 1 678 162 11 123 chr12 1455267 1455400 -142331055 + MLT1A1 LTR MaLR 47 159 -206 407 143 0 0 chr12 1455404 1455474 -142330981 + L1PA16 LINE L1 6095 6164 -2 375 181 0 0 chr12 1455769 1455841 -142330614 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 991 247 9 0 chr12 1455858 1456077 -142330378 + MLT1A1 LTR MaLR 145 365 0 192 234 0 0 chr12 1456891 1456938 -142329517 + GA-rich Low_complexity Low_complexity 2 48 0 425 225 116 25 chr12 1457384 1457478 -142328977 - L1MEd LINE L1 -2927 3202 3118 279 0 0 0 chr12 1457478 1457509 -142328946 + (TG)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1457509 1457571 -142328884 - L1MEd LINE L1 -3011 3118 3063 2224 105 26 0 chr12 1457571 1457875 -142328580 - AluSx SINE Alu 0 312 1 425 225 116 25 chr12 1457875 1458001 -142328454 - L1MEd LINE L1 -3066 3063 2893 473 211 119 32 chr12 1458116 1458301 -142328154 - L1MEd LINE L1 -4976 1143 943 724 286 113 0 chr12 1458407 1458620 -142327835 - MIR SINE MIR -6 256 20 22 35 0 0 chr12 1458620 1458649 -142327806 + AT_rich Low_complexity Low_complexity 1 29 0 198 191 0 0 chr12 1458785 1458832 -142327623 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2581 55 3 0 chr12 1458890 1459200 -142327255 + AluY SINE Alu 1 311 0 2962 183 29 87 chr12 1459211 1460802 -142325653 + L1MB7 LINE L1 4672 6169 -15 1876 160 3 22 chr12 1460872 1461190 -142325265 + AluJo SINE Alu 1 312 0 699 180 65 40 chr12 1461291 1461491 -142324964 + MLT1A1 LTR MaLR 158 362 -3 366 312 76 73 chr12 1461494 1461795 -142324660 - L1MC4a LINE L1 -1106 6702 6401 1932 130 18 0 chr12 1461840 1462124 -142324331 + AluJb SINE Alu 1 289 -23 1996 267 67 23 chr12 1462152 1462994 -142323461 - L1MC4a LINE L1 -1468 6340 5462 372 331 47 39 chr12 1463081 1463465 -142322990 - L1MEd LINE L1 -5589 530 144 294 355 59 13 chr12 1463572 1463724 -142322731 + L2 LINE L2 3114 3272 0 1801 146 140 29 chr12 1465257 1465642 -142320813 - MSTA LTR MaLR 0 428 1 2497 63 3 0 chr12 1465702 1466005 -142320450 - AluY SINE Alu -7 304 1 2307 67 40 3 chr12 1466079 1466377 -142320078 - AluY SINE Alu -1 310 2 378 0 0 0 chr12 1466474 1466516 -142319939 + (CA)n Simple_repeat Simple_repeat 2 43 0 1782 145 7 24 chr12 1466589 1466878 -142319577 - AluJb SINE Alu -28 284 1 1145 194 118 0 chr12 1467793 1468108 -142318347 + MER31A LTR ERV1 128 479 -6 1696 206 82 5 chr12 1468156 1469053 -142317402 + L1MDa LINE L1 119 1125 -5415 29 90 0 0 chr12 1469662 1469740 -142316715 + AT_rich Low_complexity Low_complexity 1 78 0 23 0 0 0 chr12 1469766 1469789 -142316666 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 1469982 1470004 -142316451 + AT_rich Low_complexity Low_complexity 1 22 0 373 345 76 29 chr12 1470738 1471013 -142315442 + L2 LINE L2 2165 2452 -862 357 232 58 29 chr12 1471158 1471300 -142315155 + MLT1J2 LTR MaLR 295 391 -18 289 329 13 87 chr12 1471311 1471621 -142314834 + L2 LINE L2 2564 2850 -464 2294 59 55 3 chr12 1471755 1472044 -142314411 - AluY SINE Alu -7 304 1 1276 235 154 28 chr12 1472279 1472713 -142313742 - MLT1D LTR MaLR 0 505 17 1719 189 63 85 chr12 1472759 1473204 -142313251 - MLT1D-int LTR MaLR 0 1371 937 499 268 67 58 chr12 1473257 1473458 -142312997 + L1ME3A LINE L1 5940 6145 -25 2224 113 0 13 chr12 1473458 1473758 -142312697 - AluSx SINE Alu -16 296 1 499 268 67 58 chr12 1473758 1473780 -142312675 + L1ME3A LINE L1 6145 6165 -5 2340 105 3 0 chr12 1473787 1474092 -142312363 + AluSg SINE Alu 1 306 -4 2555 26 0 10 chr12 1474539 1474841 -142311614 + AluY SINE Alu 1 299 -12 712 264 94 24 chr12 1476071 1476283 -142310172 + MIR SINE MIR 1 227 -35 1131 145 0 0 chr12 1476475 1476641 -142309814 - AluSg/x SINE Alu -15 297 132 22 0 0 0 chr12 1477286 1477308 -142309147 + AT_rich Low_complexity Low_complexity 1 22 0 246 290 29 0 chr12 1477478 1477547 -142308908 - MIR3 SINE MIR -35 173 103 383 267 59 81 chr12 1477631 1477867 -142308588 + MER102a DNA MER1_type 78 308 -22 308 337 34 0 chr12 1477949 1478038 -142308417 - MIR3 SINE MIR -111 97 6 636 174 0 97 chr12 1478628 1478783 -142307672 + FLAM_C SINE Alu 4 143 0 693 227 38 3 chr12 1479985 1480187 -142306268 - L1ME2 LINE L1 -206 5968 5756 805 234 78 34 chr12 1480188 1480562 -142305893 + MLT1F LTR MaLR 1 540 -2 364 265 18 71 chr12 1480562 1480732 -142305723 + MLT1F-int LTR MaLR 1 161 -1210 * 711 268 77 4 chr12 1480718 1480953 -142305502 + MLT1F-int LTR MaLR 265 516 -855 2246 99 0 3 chr12 1484088 1484390 -142302065 + AluSg1 SINE Alu 1 301 -8 263 289 141 21 chr12 1484504 1484646 -142301809 - MIR SINE MIR -47 215 57 1735 147 67 56 chr12 1484661 1485021 -142301434 + THE1B LTR MaLR 1 364 0 216 67 0 0 chr12 1485269 1485299 -142301156 + (A)n Simple_repeat Simple_repeat 1 30 0 2259 120 0 0 chr12 1486315 1486624 -142299831 - AluSc SINE Alu 0 309 1 607 164 9 0 chr12 1487520 1487630 -142298825 - L1MB3 LINE L1 -1 6182 6072 186 292 42 42 chr12 1488320 1488392 -142298063 - MIR SINE MIR -72 190 119 211 264 42 42 chr12 1488412 1488484 -142297971 - MIR SINE MIR -72 190 119 202 274 41 41 chr12 1488503 1488576 -142297879 - MIR SINE MIR -71 191 119 480 273 31 37 chr12 1488595 1488756 -142297699 - MIR SINE MIR -71 191 32 1851 158 20 0 chr12 1488793 1489091 -142297364 + L1MB1 LINE L1 5864 6167 -1 1782 131 55 24 chr12 1489111 1489402 -142297053 + AluJb SINE Alu 1 300 -12 307 154 115 0 chr12 1491738 1491816 -142294639 - L1ME4a LINE L1 -4 6117 6031 210 71 0 0 chr12 1492150 1492178 -142294277 + (A)n Simple_repeat Simple_repeat 1 28 0 2484 142 78 2 chr12 1493900 1494338 -142292117 - L1MB2 LINE L1 0 6171 5701 430 310 0 0 chr12 1494564 1494677 -142291778 + L2 LINE L2 3192 3304 -9 364 158 0 0 chr12 1494885 1494942 -142291513 - AluS SINE Alu -251 57 1 2186 111 3 7 chr12 1495060 1495357 -142291098 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1495920 1496224 -142290231 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1496714 1496897 -142289558 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1496897 1497195 -142289260 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1497195 1497310 -142289145 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1498523 1498548 -142287907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1499008 1499219 -142287236 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1499219 1499527 -142286928 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1499527 1499635 -142286820 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1499844 1499976 -142286479 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1499999 1500114 -142286341 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1500863 1501039 -142285416 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1501234 1501552 -142284903 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1501635 1501946 -142284509 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1502730 1503339 -142283116 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1503339 1503674 -142282781 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1503675 1504150 -142282305 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1504146 1505183 -142281272 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1505183 1505327 -142281128 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1505327 1505659 -142280796 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1505659 1505738 -142280717 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1505750 1506135 -142280320 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1506140 1507155 -142279300 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1507848 1508579 -142277876 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1509084 1509384 -142277071 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1510953 1511288 -142275167 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1511735 1511917 -142274538 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1512273 1512527 -142273928 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1512527 1512798 -142273657 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1512798 1513104 -142273351 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1513409 1513461 -142272994 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1513461 1513499 -142272956 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1513499 1513904 -142272551 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1513999 1514062 -142272393 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1514048 1514212 -142272243 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1514217 1514248 -142272207 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1514533 1514714 -142271741 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1514955 1514978 -142271477 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1514981 1515158 -142271297 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1515382 1515692 -142270763 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1515816 1515998 -142270457 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1516035 1516811 -142269644 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1517694 1517729 -142268726 + (TG)n Simple_repeat Simple_repeat 2 36 0 2266 97 0 10 chr12 1518508 1518816 -142267639 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1518899 1518939 -142267516 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1520074 1520486 -142265969 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1521536 1522072 -142264383 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1522317 1522616 -142263839 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1522627 1522674 -142263781 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1522746 1522866 -142263589 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1525140 1525262 -142261193 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1525930 1526064 -142260391 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1526363 1526674 -142259781 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1526674 1526732 -142259723 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1526764 1526810 -142259645 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1527016 1527323 -142259132 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1527479 1527646 -142258809 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1529294 1529419 -142257036 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1529569 1529812 -142256643 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1529845 1529978 -142256477 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1529978 1530267 -142256188 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1530267 1530444 -142256011 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1530506 1530527 -142255928 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1530645 1531011 -142255444 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1531025 1531140 -142255315 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1531251 1531334 -142255121 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1531628 1532508 -142253947 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1532508 1532796 -142253659 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1532796 1533458 -142252997 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1533458 1533604 -142252851 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1534089 1534113 -142252342 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1534923 1535222 -142251233 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1535838 1536071 -142250384 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1536430 1536743 -142249712 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1536745 1537011 -142249444 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1537011 1537315 -142249140 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1537315 1537489 -142248966 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1537674 1537990 -142248465 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1538020 1538314 -142248141 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1538314 1538485 -142247970 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1538568 1538873 -142247582 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1538879 1539185 -142247270 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1539194 1539499 -142246956 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1539506 1539616 -142246839 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1540064 1540254 -142246201 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1540253 1540394 -142246061 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1540408 1540721 -142245734 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1541369 1541397 -142245058 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1541419 1541717 -142244738 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1541722 1541851 -142244604 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1541853 1542159 -142244296 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1542162 1542277 -142244178 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1542410 1542556 -142243899 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1542556 1542680 -142243775 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1543483 1543518 -142242937 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1543804 1543923 -142242532 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1545040 1545089 -142241366 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1545392 1545436 -142241019 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1547257 1547545 -142238910 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1547545 1547575 -142238880 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1551177 1551476 -142234979 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1551658 1551891 -142234564 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1552048 1552256 -142234199 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1552806 1553073 -142233382 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1553213 1553322 -142233133 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1555256 1555571 -142230884 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1555857 1555956 -142230499 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1556631 1556655 -142229800 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1557914 1558132 -142228323 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1559570 1559681 -142226774 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1559682 1559810 -142226645 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1559866 1559906 -142226549 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1559906 1560207 -142226248 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1560207 1560798 -142225657 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1560827 1561038 -142225417 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1561050 1561329 -142225126 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1561814 1561841 -142224614 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1561841 1562134 -142224321 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1562134 1562180 -142224275 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1562177 1562317 -142224138 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1562476 1562628 -142223827 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1562652 1562954 -142223501 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1562981 1563035 -142223420 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1563036 1563191 -142223264 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1563191 1563448 -142223007 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1564807 1564854 -142221601 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1564881 1565757 -142220698 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1565757 1566038 -142220417 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1566042 1566999 -142219456 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1567007 1567164 -142219291 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1567166 1567913 -142218542 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1567913 1568226 -142218229 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1568226 1568450 -142218005 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1568789 1568896 -142217559 + MIR SINE MIR 117 231 -31 3269 164 18 37 chr12 1569056 1569796 -142216659 - L1MD2 LINE L1 -456 5903 5175 1370 213 26 11 chr12 1569798 1570150 -142216305 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1570161 1570495 -142215960 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1570688 1571212 -142215243 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1571859 1572007 -142214448 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1574150 1574473 -142211982 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1574810 1574980 -142211475 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1575076 1575365 -142211090 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1575474 1575753 -142210702 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1575753 1575891 -142210564 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1575891 1576179 -142210276 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1576179 1576363 -142210092 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1576363 1576427 -142210028 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1576677 1576970 -142209485 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1578237 1578364 -142208091 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1578415 1578505 -142207950 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1578731 1578870 -142207585 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1579131 1579185 -142207270 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1579185 1579488 -142206967 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1579488 1579627 -142206828 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1579806 1580157 -142206298 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1580163 1580467 -142205988 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1580973 1581275 -142205180 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1581694 1581755 -142204700 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1582395 1582677 -142203778 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1584241 1584318 -142202137 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1584707 1584745 -142201710 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1584805 1584925 -142201530 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1584979 1585009 -142201446 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1585074 1585109 -142201346 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1588416 1588738 -142197717 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1588742 1588819 -142197636 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1589973 1590183 -142196272 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1590468 1590557 -142195898 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1590563 1590772 -142195683 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1590772 1590900 -142195555 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1590900 1591236 -142195219 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1591236 1591765 -142194690 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1591757 1592041 -142194414 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1592099 1592388 -142194067 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1592982 1593168 -142193287 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1593625 1593850 -142192605 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1594266 1594431 -142192024 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1595244 1595541 -142190914 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1595617 1595784 -142190671 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1596150 1596453 -142190002 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1596725 1596742 -142189713 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1596742 1597091 -142189364 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1597092 1597278 -142189177 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1597278 1597301 -142189154 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1597301 1597319 -142189136 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1597322 1597573 -142188882 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1597573 1597816 -142188639 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1597816 1598022 -142188433 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1598099 1598576 -142187879 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1598591 1598729 -142187726 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1598729 1599028 -142187427 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1599400 1599604 -142186851 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1599782 1600083 -142186372 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1601866 1601965 -142184490 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1601965 1602171 -142184284 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1602171 1602389 -142184066 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1602389 1602741 -142183714 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1602741 1603037 -142183418 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1603042 1603062 -142183393 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1603062 1603112 -142183343 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1603114 1603598 -142182857 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1603598 1603908 -142182547 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1603908 1605004 -142181451 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1605006 1605325 -142181130 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1605355 1605710 -142180745 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1606237 1606306 -142180149 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1607140 1607250 -142179205 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1607984 1608117 -142178338 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1609009 1609311 -142177144 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1609498 1609656 -142176799 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1609683 1609746 -142176709 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1609777 1610065 -142176390 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1610073 1610192 -142176263 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1610192 1610485 -142175970 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1610485 1610599 -142175856 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1610637 1611328 -142175127 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1611332 1611633 -142174822 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1611633 1611717 -142174738 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1611717 1612021 -142174434 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1612021 1612325 -142174130 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1612325 1612655 -142173800 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1612754 1612856 -142173599 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1612972 1613263 -142173192 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1613472 1613503 -142172952 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1613916 1613972 -142172483 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1614061 1614320 -142172135 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1614376 1614452 -142172003 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1614488 1614531 -142171924 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1614531 1614827 -142171628 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1614827 1615000 -142171455 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1615000 1615039 -142171416 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1615381 1615534 -142170921 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1615535 1615626 -142170829 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1615796 1615918 -142170537 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1615897 1616039 -142170416 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1616039 1616358 -142170097 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1616358 1616440 -142170015 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1616743 1616796 -142169659 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1617445 1617467 -142168988 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1617468 1617613 -142168842 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1618370 1618490 -142167965 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1618491 1618650 -142167805 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1618652 1618987 -142167468 + AluSq SINE Alu 1 313 0 266 182 26 26 chr12 1620325 1620402 -142166053 + (TA)n Simple_repeat Simple_repeat 1 77 0 5614 161 94 38 chr12 1620403 1621177 -142165278 + L1MCa LINE L1 117 847 -5693 2100 100 3 85 chr12 1621177 1621517 -142164938 + AluSx SINE Alu 1 312 0 5614 161 94 38 chr12 1621517 1622677 -142163778 + L1MCa LINE L1 847 2262 -4278 1395 74 26 0 chr12 1622677 1622867 -142163588 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1622867 1622936 -142163519 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1623276 1623314 -142163141 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1623391 1623695 -142162760 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1624119 1624429 -142162026 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1625192 1625504 -142160951 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1625847 1625921 -142160534 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1626224 1626382 -142160073 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1626639 1627281 -142159174 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1627229 1627437 -142159018 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1627607 1627719 -142158736 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1627719 1628025 -142158430 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1628025 1628224 -142158231 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1628340 1628521 -142157934 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1628899 1628921 -142157534 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1629302 1629392 -142157063 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1630760 1630831 -142155624 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1632355 1632653 -142153802 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1633330 1633623 -142152832 + AluSx SINE Alu 1 296 -16 1933 128 7 3 chr12 1635839 1636267 -142150188 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1637106 1637138 -142149317 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1638080 1638353 -142148102 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1639113 1639410 -142147045 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1640251 1640372 -142146083 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1640378 1640499 -142145956 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1640952 1641261 -142145194 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1643102 1643416 -142143039 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1643455 1643500 -142142955 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1643514 1643655 -142142800 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1646178 1646227 -142140228 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1648153 1648180 -142138275 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1648193 1648311 -142138144 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1648365 1648478 -142137977 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1648479 1648539 -142137916 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1648786 1648860 -142137595 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1650881 1650968 -142135487 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1651509 1651560 -142134895 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1651617 1651918 -142134537 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1651930 1652021 -142134434 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1652271 1652558 -142133897 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1652559 1652688 -142133767 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1652689 1653252 -142133203 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1653252 1653388 -142133067 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1653389 1653697 -142132758 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1653697 1653743 -142132712 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1653976 1654056 -142132399 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1654367 1654662 -142131793 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1655110 1655387 -142131068 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1655703 1655931 -142130524 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1656074 1656369 -142130086 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1656593 1656887 -142129568 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1656917 1657011 -142129444 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1657251 1657477 -142128978 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1657484 1657734 -142128721 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1657809 1657894 -142128561 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1657894 1658177 -142128278 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1658177 1658492 -142127963 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1658778 1658944 -142127511 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1658967 1659065 -142127390 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1659094 1659256 -142127199 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1660633 1660918 -142125537 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1660920 1660957 -142125498 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1661033 1661340 -142125115 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1661669 1661972 -142124483 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1663084 1663399 -142123056 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1663559 1663901 -142122554 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1663997 1664108 -142122347 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1664109 1664131 -142122324 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1664516 1664633 -142121822 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1664633 1664665 -142121790 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1665086 1665390 -142121065 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1666584 1666718 -142119737 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1666884 1667025 -142119430 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1667246 1667533 -142118922 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1667699 1668087 -142118368 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1668727 1668915 -142117540 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1668986 1669032 -142117423 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1669826 1670015 -142116440 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1670116 1670190 -142116265 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1671298 1671324 -142115131 + AT_rich Low_complexity Low_complexity 1 26 0 1921 149 20 7 chr12 1671361 1671656 -142114799 + AluJb SINE Alu 13 311 -1 1896 146 7 10 chr12 1671853 1672148 -142114307 + AluJo SINE Alu 1 294 -18 832 250 51 90 chr12 1674039 1674527 -142111928 - L1ME3A LINE L1 0 6170 5702 1185 137 0 6 chr12 1674527 1674702 -142111753 - AluSc SINE Alu -4 305 132 2340 82 3 0 chr12 1674702 1674993 -142111462 - AluSc SINE Alu -13 296 5 259 393 159 0 chr12 1675086 1675287 -142111168 - L2 LINE L2 -665 2649 2417 1683 164 60 11 chr12 1675560 1675841 -142110614 - AluJo SINE Alu -17 295 1 1726 31 0 0 chr12 1676101 1676294 -142110161 - AluY SINE Alu -6 305 113 311 335 126 38 chr12 1676667 1676930 -142109525 - L2 LINE L2 -1 3312 3027 246 282 33 127 chr12 1677075 1677181 -142109274 - L2 LINE L2 -474 2840 2756 2624 61 0 0 chr12 1677181 1677491 -142108964 - AluY SINE Alu -1 310 1 246 282 33 127 chr12 1677491 1677565 -142108890 - L2 LINE L2 -558 2756 2677 2250 96 33 0 chr12 1678101 1678404 -142108051 + AluSq SINE Alu 1 313 0 503 282 140 5 chr12 1678454 1678656 -142107799 + MIR SINE MIR 37 262 0 2283 125 3 0 chr12 1679648 1679959 -142106496 - AluSx SINE Alu 0 312 1 1884 151 68 0 chr12 1679963 1680255 -142106200 - AluJo SINE Alu 0 312 1 2373 95 3 0 chr12 1680264 1680559 -142105896 - AluSp SINE Alu -17 296 1 2431 68 0 3 chr12 1680566 1680861 -142105594 - AluY SINE Alu -17 294 1 268 333 121 38 chr12 1680930 1681194 -142105261 - L2 LINE L2 -1 3312 3027 358 225 0 56 chr12 1681912 1682001 -142104454 + L2 LINE L2 3230 3313 0 1839 125 4 8 chr12 1682157 1682421 -142104034 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1682906 1682958 -142103497 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1683038 1683066 -142103389 + AT_rich Low_complexity Low_complexity 1 28 0 219 184 41 20 chr12 1686536 1686585 -142099870 + L2 LINE L2 3221 3270 -2 892 108 0 8 chr12 1687928 1688048 -142098407 + FLAM_C SINE Alu 9 127 -16 663 307 179 12 chr12 1689238 1689557 -142096898 + L3 LINE CR1 1055 1426 -151 2659 157 50 18 chr12 1690159 1690494 -142095961 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1690494 1690538 -142095917 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1690539 1690699 -142095756 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1690699 1690730 -142095725 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2097 106 29 0 chr12 1690730 1691004 -142095451 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1691004 1691146 -142095309 - AluJo SINE Alu -174 138 1 2659 157 50 18 chr12 1691146 1691323 -142095132 - L1MB7 LINE L1 -329 5855 5645 843 115 56 133 chr12 1691324 1691452 -142095003 - Tigger1 DNA MER2_type -1 2417 2313 2243 84 0 45 chr12 1691452 1691760 -142094695 + AluSg SINE Alu 1 294 -16 843 115 56 133 chr12 1691760 1691865 -142094590 - Tigger1 DNA MER2_type -105 2313 2202 728 151 24 78 chr12 1691854 1691963 -142094492 - Tigger1 DNA MER2_type -2261 157 57 * 2157 96 7 0 chr12 1691963 1692273 -142094182 + AluY SINE Alu 1 312 0 728 151 24 78 chr12 1692273 1692328 -142094127 - Tigger1 DNA MER2_type -2361 57 1 922 187 87 48 chr12 1692332 1692562 -142093893 - L1MB7 LINE L1 -542 5642 5404 2473 55 3 3 chr12 1693124 1693433 -142093022 - AluY SINE Alu -2 309 1 328 321 36 0 chr12 1693433 1693545 -142092910 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1694174 1694201 -142092254 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2382 94 0 3 chr12 1695099 1695398 -142091057 + AluSx SINE Alu 1 298 -14 2239 101 26 13 chr12 1695517 1695825 -142090630 + AluSx SINE Alu 1 312 0 2458 67 3 7 chr12 1697362 1697661 -142088794 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1697683 1697709 -142088746 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1697766 1697825 -142088630 + (TA)n Simple_repeat Simple_repeat 1 60 0 274 225 42 14 chr12 1698384 1698455 -142088000 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1699224 1699250 -142087205 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 969 173 0 0 chr12 1699253 1699409 -142087046 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1700297 1700334 -142086121 + AT_rich Low_complexity Low_complexity 1 37 0 2162 136 3 0 chr12 1702097 1702392 -142084063 + AluSx SINE Alu 1 296 -16 225 344 21 11 chr12 1702993 1703086 -142083369 - MIR3 SINE MIR -7 201 108 368 256 160 16 chr12 1703090 1703215 -142083240 - MER5A DNA MER1_type -33 156 14 393 70 0 0 chr12 1704099 1704156 -142082299 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1704908 1704933 -142081522 + (GA)n Simple_repeat Simple_repeat 2 26 0 503 255 26 39 chr12 1705215 1705368 -142081087 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1705600 1705638 -142080817 + (TC)n Simple_repeat Simple_repeat 1 38 0 2402 75 0 19 chr12 1706396 1706714 -142079741 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1707056 1707084 -142079371 + AT_rich Low_complexity Low_complexity 1 28 0 2005 103 3 59 chr12 1707084 1707404 -142079051 + AluSx SINE Alu 1 302 -10 529 271 112 0 chr12 1707665 1707835 -142078620 - MIR SINE MIR 0 262 74 1746 157 13 41 chr12 1708054 1708199 -142078256 + AluJo SINE Alu 1 149 -163 1859 152 7 24 chr12 1708199 1708495 -142077960 + AluJo SINE Alu 1 291 -21 1746 157 13 41 chr12 1708495 1708667 -142077788 + AluJo SINE Alu 149 309 -3 780 211 0 0 chr12 1709797 1709925 -142076530 + FLAM_C SINE Alu 2 129 -14 323 257 9 55 chr12 1709928 1710037 -142076418 - MER5B DNA MER1_type -58 120 17 742 166 72 122 chr12 1710223 1710371 -142076084 + FAM SINE Alu 4 143 -168 2022 109 46 7 chr12 1710371 1710654 -142075801 - AluSg SINE Alu -16 294 1 742 166 72 122 chr12 1710654 1710686 -142075769 + FAM SINE Alu 143 175 0 1550 209 7 7 chr12 1711334 1711636 -142074819 - AluJo SINE Alu -10 302 1 331 136 0 17 chr12 1711646 1711705 -142074750 - FLAM SINE Alu 0 133 76 1776 174 3 33 chr12 1711934 1712233 -142074222 - AluJb SINE Alu -22 290 1 1622 121 128 12 chr12 1712473 1712730 -142073725 + AluSg SINE Alu 1 287 -23 318 288 116 14 chr12 1713176 1713322 -142073133 - MIR SINE MIR -65 197 37 20958 30 1 3 chr12 1713400 1716716 -142069739 + L1PA4 LINE L1 2838 6155 0 3538 147 49 12 chr12 1717652 1718326 -142068129 + L1MC2 LINE L1 5644 6342 -2 2187 120 0 13 chr12 1718337 1718646 -142067809 - AluSx SINE Alu -7 305 1 1712 173 67 6 chr12 1718646 1718992 -142067463 + L1MB4 LINE L1 5814 6180 0 1375 167 148 0 chr12 1719000 1719263 -142067192 + AluJo SINE Alu 1 302 0 2565 70 0 0 chr12 1719686 1719988 -142066467 - AluY SINE Alu -9 302 1 216 0 0 0 chr12 1720682 1720706 -142065749 + (A)n Simple_repeat Simple_repeat 1 24 0 871 173 0 0 chr12 1720711 1720844 -142065611 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr12 1720844 1720880 -142065575 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr12 1720955 1720998 -142065457 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr12 1721342 1721365 -142065090 + (A)n Simple_repeat Simple_repeat 1 23 0 2416 96 0 3 chr12 1721570 1721883 -142064572 - AluSx SINE Alu 0 312 1 2208 109 13 13 chr12 1721915 1722227 -142064228 + AluSq SINE Alu 1 312 -1 28 29 0 0 chr12 1722826 1722861 -142063594 + AT_rich Low_complexity Low_complexity 1 35 0 293 325 87 16 chr12 1723136 1723262 -142063193 - L2 LINE L2 -201 3071 2937 241 310 118 68 chr12 1723303 1723745 -142062710 - L2 LINE L2 -763 2551 2088 221 321 0 18 chr12 1723707 1723763 -142062692 - MIR SINE MIR -120 88 34 * 2150 122 0 0 chr12 1723827 1724123 -142062332 + AluSq SINE Alu 1 296 -17 475 237 105 0 chr12 1724315 1724429 -142062026 + L2 LINE L2 3188 3313 0 294 284 25 0 chr12 1724622 1724703 -142061752 + L2 LINE L2 3225 3307 -6 2180 104 20 7 chr12 1724905 1725203 -142061252 + AluSq SINE Alu 1 302 -11 182 289 0 0 chr12 1725380 1725425 -142061030 + L2 LINE L2 3228 3272 0 1202 144 0 0 chr12 1725462 1725642 -142060813 + AluJb SINE Alu 129 308 -4 3136 154 35 53 chr12 1725661 1726044 -142060411 - L1MB3 LINE L1 -12 6171 5802 2246 98 0 3 chr12 1726044 1726340 -142060115 + AluSg SINE Alu 1 295 -15 3136 154 35 53 chr12 1726340 1726578 -142059877 - L1MB3 LINE L1 -381 5802 5561 259 122 0 0 chr12 1726580 1726621 -142059834 - L1MD1 LINE L1 -323 5919 5879 1729 123 27 61 chr12 1726651 1726977 -142059478 - AluSx SINE Alu 0 316 1 333 214 84 104 chr12 1727668 1727822 -142058633 + L2 LINE L2 1747 1897 -1417 1695 252 137 24 chr12 1727851 1728752 -142057703 + L2 LINE L2 2230 3239 -74 1517 129 182 116 chr12 1728753 1728809 -142057646 - MER4A LTR ERV1 0 664 613 2375 100 7 0 chr12 1728809 1729119 -142057336 + AluSx SINE Alu 1 312 0 1517 129 182 116 chr12 1729119 1729441 -142057014 - MER4A LTR ERV1 -51 613 261 533 174 10 10 chr12 1729441 1729539 -142056916 - MER4A LTR ERV1 -566 98 1 3185 104 76 17 chr12 1729551 1730022 -142056433 + MER1A DNA MER1_type 1 499 -30 304 236 14 42 chr12 1730023 1730095 -142056360 + L2 LINE L2 3243 3312 -1 245 271 75 56 chr12 1730231 1730338 -142056117 + L2 LINE L2 3122 3230 -42 1995 134 10 13 chr12 1730348 1730661 -142055794 + AluSx SINE Alu 1 312 0 662 296 69 9 chr12 1730689 1730922 -142055533 - MIR SINE MIR -6 256 10 372 226 0 0 chr12 1731722 1731810 -142054645 + L1ME1 LINE L1 6090 6184 0 265 304 0 33 chr12 1732401 1732493 -142053962 - L2 LINE L2 -6 3307 3219 2255 105 7 0 chr12 1732603 1732898 -142053557 - AluSp SINE Alu -14 299 3 731 118 2 2 chr12 1734159 1734276 -142052179 - LTR12 LTR ERV1 -132 582 170 295 264 11 0 chr12 1734276 1734367 -142052088 - LTR30 LTR ERV1 -79 643 552 1715 103 96 4 chr12 1734367 1734628 -142051827 - LTR12 LTR ERV1 -429 285 1 1000 145 6 12 chr12 1734628 1734785 -142051670 - pTR5 LTR ERV1 -1696 742 587 281 114 0 23 chr12 1734765 1734809 -142051646 + Harlequin LTR ERV1 5568 5610 -2789 * 26667 91 16 22 chr12 1734826 1738550 -142047905 + Harlequin LTR ERV1 1252 4952 -3447 829 129 188 8 chr12 1738537 1738793 -142047662 + Harlequin LTR ERV1 840 1141 -5755 * 5703 102 1 1 chr12 1738791 1739572 -142046883 + Harlequin LTR ERV1 7503 8283 -116 2162 120 3 6 chr12 1739552 1739876 -142046579 - HERV9 LTR ERV1 -8004 395 73 * 801 107 1 15 chr12 1739871 1739997 -142046458 - LTR12 LTR ERV1 -130 584 301 * 312 244 11 0 chr12 1739997 1740087 -142046368 - LTR30 LTR ERV1 -79 643 553 1248 112 122 5 chr12 1740088 1740285 -142046170 - LTR12 LTR ERV1 -429 285 66 31 26 0 0 chr12 1740561 1740599 -142045856 + AT_rich Low_complexity Low_complexity 1 38 0 2562 216 94 46 chr12 1740900 1741306 -142045149 + L1ME1 LINE L1 4319 4704 -1462 2306 98 3 0 chr12 1741306 1741601 -142044854 + AluSx SINE Alu 1 296 -16 2562 216 94 46 chr12 1741601 1742015 -142044440 + L1ME1 LINE L1 4704 5097 -1069 1048 185 106 97 chr12 1742015 1742356 -142044099 + MER2 DNA MER2_type 1 344 0 2562 216 94 46 chr12 1742356 1742552 -142043903 + L1ME1 LINE L1 5097 5282 -884 1462 177 39 45 chr12 1742552 1742863 -142043592 + AluJb SINE Alu 1 309 -3 2562 216 94 46 chr12 1742863 1743326 -142043129 + L1ME1 LINE L1 5282 5721 -445 842 208 13 0 chr12 1743326 1743480 -142042975 - FRAM SINE Alu -10 156 1 2562 216 94 46 chr12 1743480 1743725 -142042730 + L1ME1 LINE L1 5721 6161 -5 291 335 89 0 chr12 1744011 1744169 -142042286 - MIR SINE MIR -26 236 65 507 261 112 12 chr12 1744331 1744492 -142041963 - MIR SINE MIR -81 181 5 1636 127 156 0 chr12 1744672 1744955 -142041500 - MER46B DNA MER2_type -34 202 1 346 172 0 16 chr12 1744909 1744973 -142041482 + MER46A DNA MER2_type 99 161 -75 * 226 224 35 0 chr12 1746193 1746251 -142040204 + L1M4 LINE L1 4925 4984 -1162 208 241 0 0 chr12 1746251 1746309 -142040146 + A-rich Low_complexity Low_complexity 1 58 0 1015 208 20 15 chr12 1746316 1746518 -142039937 + AluJo SINE Alu 5 207 -105 243 0 0 0 chr12 1746578 1746605 -142039850 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1463 171 80 8 chr12 1746607 1746871 -142039584 - AluJb SINE Alu -29 283 1 349 278 130 60 chr12 1746916 1747269 -142039186 - L1ME4a LINE L1 -65 6056 5679 523 228 29 29 chr12 1747364 1747500 -142038955 - LTR49 LTR ERV1 -1 594 459 307 266 213 12 chr12 1747502 1747671 -142038784 + L1M4 LINE L1 5086 5288 -858 345 288 89 57 chr12 1747711 1748027 -142038428 + L1M4 LINE L1 5328 5653 -2155 315 207 413 0 chr12 1748051 1748172 -142038283 + MER112 DNA MER1_type 67 237 -23 2223 120 3 0 chr12 1748177 1748485 -142037970 - AluSx SINE Alu -3 309 1 372 181 32 76 chr12 1748511 1748681 -142037774 + L1M4 LINE L1 5658 5820 -301 392 189 14 0 chr12 1748688 1748762 -142037693 - MER116 DNA Mariner 0 80 6 1615 180 31 3 chr12 1748903 1749197 -142037258 + AluJb SINE Alu 1 302 -10 2058 104 10 7 chr12 1750657 1750824 -142035631 - AluSp SINE Alu -14 299 129 202 0 29 57 chr12 1750824 1750859 -142035596 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1750859 1750988 -142035467 - AluSp SINE Alu -184 129 2 205 277 191 32 chr12 1751117 1751211 -142035244 - L2 LINE L2 -18 3254 3146 327 291 36 9 chr12 1751458 1751568 -142034887 + L1ME LINE L1 5496 5608 -513 1583 170 57 11 chr12 1751802 1752084 -142034371 + AluJb SINE Alu 1 295 -17 297 0 0 0 chr12 1752085 1752118 -142034337 + (CA)n Simple_repeat Simple_repeat 2 34 0 1727 194 0 6 chr12 1753628 1753942 -142032513 + AluJo SINE Alu 1 312 0 201 171 0 0 chr12 1754456 1754491 -142031964 + A-rich Low_complexity Low_complexity 1 35 0 2134 113 0 29 chr12 1754643 1754953 -142031502 - AluSq SINE Alu -12 301 1 770 183 34 57 chr12 1754956 1755131 -142031324 - AluJo SINE Alu -16 296 126 865 191 42 0 chr12 1755145 1755313 -142031142 + AluJb SINE Alu 137 311 -1 891 189 90 0 chr12 1755314 1755526 -142030929 + L1MC2 LINE L1 6111 6341 -3 1882 164 52 12 chr12 1755675 1756004 -142030451 - MER2 DNA MER2_type 0 344 3 848 272 37 16 chr12 1756062 1756305 -142030150 + MIR SINE MIR 5 252 -10 2272 87 19 16 chr12 1756492 1756804 -142029651 + AluSq SINE Alu 1 313 0 1008 209 0 71 chr12 1756985 1757148 -142029307 - MER58A DNA MER1_type -2198 222 80 2214 125 0 0 chr12 1757148 1757452 -142029003 - AluSq SINE Alu -9 304 1 1008 209 0 71 chr12 1757452 1757527 -142028928 - MER58A DNA MER1_type -2340 80 1 218 244 0 0 chr12 1759165 1759206 -142027249 + G-rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 1759220 1759243 -142027212 + (CCG)n Simple_repeat Simple_repeat 3 25 0 202 224 30 15 chr12 1759262 1759329 -142027126 + (CCG)n Simple_repeat Simple_repeat 1 68 0 2295 100 3 3 chr12 1760855 1761155 -142025300 + AluSx SINE Alu 1 300 -12 1151 126 6 0 chr12 1761968 1762127 -142024328 + FRAM SINE Alu 5 164 -2 867 158 47 0 chr12 1762182 1762309 -142024146 - FLAM_C SINE Alu 0 133 1 2598 51 0 3 chr12 1762938 1763249 -142023206 + AluY SINE Alu 1 310 -1 3531 198 61 35 chr12 1763725 1764133 -142022322 - L1ME2 LINE L1 -9 6155 5759 1822 183 0 0 chr12 1764133 1764439 -142022016 - AluJo SINE Alu -2 310 5 3531 198 61 35 chr12 1764439 1764876 -142021579 - L1ME2 LINE L1 -405 5759 5284 2186 138 0 0 chr12 1764876 1765181 -142021274 - AluSx SINE Alu -7 305 1 3531 198 61 35 chr12 1765181 1765213 -142021242 - L1ME2 LINE L1 -880 5284 5254 1682 149 67 0 chr12 1766281 1766570 -142019885 + AluSx SINE Alu 1 307 0 1931 141 0 20 chr12 1766575 1766874 -142019581 + AluJo SINE Alu 1 293 -19 1995 124 7 3 chr12 1766876 1767184 -142019271 + AluY SINE Alu 1 309 0 215 294 110 18 chr12 1767252 1767284 -142019171 + MER5B DNA MER1_type 34 62 -116 1913 125 69 0 chr12 1767284 1767573 -142018882 + AluJo SINE Alu 1 309 -3 215 294 110 18 chr12 1767573 1767649 -142018806 + MER5B DNA MER1_type 62 152 -26 675 198 0 95 chr12 1767673 1767751 -142018704 + MER45A DNA AcHobo 1 54 -1527 2210 117 0 3 chr12 1767751 1768059 -142018396 - AluSq SINE Alu -6 307 1 675 198 0 95 chr12 1768059 1768165 -142018290 + MER45A DNA AcHobo 54 168 -10 1156 247 8 8 chr12 1769211 1769462 -142016993 - MIR SINE MIR 0 262 12 1656 165 14 30 chr12 1769747 1770044 -142016411 + AluJo SINE Alu 1 292 -20 2274 94 3 0 chr12 1770146 1770434 -142016021 - AluSx SINE Alu -23 289 1 293 273 0 13 chr12 1770510 1770587 -142015868 + L2 LINE L2 3196 3271 -1 201 131 66 16 chr12 1770668 1770729 -142015726 + (TATAA)n Simple_repeat Simple_repeat 4 67 0 2342 99 0 0 chr12 1771056 1771359 -142015096 + AluSg SINE Alu 1 303 -7 312 278 196 21 chr12 1771881 1772075 -142014380 + L2 LINE L2 2593 2820 -494 462 85 0 0 chr12 1772266 1772325 -142014130 - Alu SINE Alu -18 292 234 347 241 23 0 chr12 1772467 1772554 -142013901 + L1ME LINE L1 24 112 -6007 2244 99 0 0 chr12 1772557 1772851 -142013604 + AluSg SINE Alu 1 294 -16 1586 188 51 10 chr12 1772855 1773147 -142013308 + AluJo SINE Alu 1 304 -8 303 273 0 26 chr12 1773262 1773339 -142013116 + L1ME LINE L1 442 516 -5603 493 247 133 95 chr12 1773404 1773609 -142012846 + L1ME LINE L1 830 1026 -5284 2308 102 3 0 chr12 1773609 1773903 -142012552 + AluSx SINE Alu 1 295 -17 493 247 133 95 chr12 1773903 1774360 -142012095 + L1ME LINE L1 1026 1580 -4730 428 226 147 49 chr12 1774496 1774700 -142011755 + L1ME LINE L1 5506 5729 -416 2268 103 7 10 chr12 1774729 1775039 -142011416 - AluY SINE Alu -2 309 1 1728 129 4 16 chr12 1775041 1775297 -142011158 - AluSx SINE Alu -16 296 44 2263 103 3 0 chr12 1775344 1775636 -142010819 + AluSx SINE Alu 3 295 -17 507 233 67 0 chr12 1775745 1775865 -142010590 - L2 LINE L2 -3 3310 3183 3132 183 45 24 chr12 1775904 1776593 -142009862 + L1M4 LINE L1 4613 5323 -855 2040 125 7 0 chr12 1776593 1776898 -142009557 + AluSg SINE Alu 1 307 0 3132 183 45 24 chr12 1776898 1777032 -142009423 + L1M4 LINE L1 5323 5453 -725 2463 92 0 0 chr12 1777032 1777336 -142009119 + AluSx SINE Alu 1 304 -8 442 264 0 9 chr12 1777419 1777529 -142008926 - MIR3 SINE MIR -19 189 81 2377 94 0 0 chr12 1777532 1777830 -142008625 + AluSx SINE Alu 1 298 -14 2589 60 0 0 chr12 1778026 1778328 -142008127 - AluY SINE Alu -9 302 1 1916 169 3 0 chr12 1778373 1778674 -142007781 - AluSx SINE Alu -10 302 1 368 294 8 8 chr12 1778690 1778816 -142007639 - L1MC5 LINE L1 -115 7846 7721 2183 116 7 7 chr12 1780328 1780630 -142005825 + AluSg SINE Alu 1 302 -8 1446 172 31 64 chr12 1781788 1781850 -142004605 - L1MB3 LINE L1 0 6183 6121 1444 165 12 93 chr12 1781850 1782172 -142004283 + AluJo SINE Alu 1 296 -16 1446 172 31 64 chr12 1782172 1782477 -142003978 - L1MB3 LINE L1 -62 6121 5817 1803 160 0 17 chr12 1782636 1782936 -142003519 - AluJb SINE Alu -17 295 1 478 134 56 14 chr12 1783086 1783228 -142003227 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 746 265 78 99 chr12 1783866 1784306 -142002149 - L1MB3 LINE L1 -336 5785 5364 2445 80 3 3 chr12 1784306 1784606 -142001849 + AluSp SINE Alu 1 300 -13 746 265 78 99 chr12 1784606 1784714 -142001741 - L1MB3 LINE L1 -757 5364 5255 301 250 146 0 chr12 1784720 1784816 -142001639 - L1MB3 LINE L1 -906 5240 5131 393 231 112 28 chr12 1785242 1785385 -142001070 + L1MC4 LINE L1 6495 6649 -1393 2153 142 0 0 chr12 1785423 1785732 -142000723 - AluJb SINE Alu -3 309 1 2215 120 3 0 chr12 1785749 1786058 -142000397 - AluSg SINE Alu 0 310 1 862 171 13 4 chr12 1786429 1786663 -141999792 + CT-rich Low_complexity Low_complexity 1 236 0 263 352 16 31 chr12 1786663 1786791 -141999664 - L2 LINE L2 -1 3271 3146 294 241 0 25 chr12 1787565 1787644 -141998811 + G-rich Low_complexity Low_complexity 5 81 0 417 97 0 113 chr12 1787647 1787842 -141998613 + (AGGGGG)n Simple_repeat Simple_repeat 5 177 0 403 98 0 109 chr12 1790354 1790537 -141995918 + (AGGGGG)n Simple_repeat Simple_repeat 5 167 0 180 188 24 12 chr12 1790919 1791004 -141995451 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 496 222 139 0 chr12 1792018 1792162 -141994293 + MER69A DNA AcHobo 1 164 -13 2397 88 0 13 chr12 1793109 1793415 -141993040 + AluSx SINE Alu 1 302 -10 1012 172 0 0 chr12 1793788 1793945 -141992510 - FRAM SINE Alu -19 157 1 189 378 122 11 chr12 1794153 1794333 -141992122 - L3b LINE CR1 -8 1575 1376 2360 106 3 0 chr12 1794342 1794653 -141991802 + AluSx SINE Alu 1 312 0 717 174 0 9 chr12 1795066 1795181 -141991274 + FLAM_C SINE Alu 3 116 -27 642 298 22 6 chr12 1795181 1795362 -141991093 + L3 LINE CR1 1360 1543 -34 518 240 99 9 chr12 1797684 1797875 -141988580 - MIR SINE MIR -38 224 23 258 324 11 39 chr12 1799036 1799218 -141987237 + (CA)n Simple_repeat Simple_repeat 1 177 0 227 253 14 14 chr12 1799235 1799381 -141987074 + (CA)n Simple_repeat Simple_repeat 2 147 0 461 272 27 15 chr12 1799460 1799800 -141986655 + (CA)n Simple_repeat Simple_repeat 1 344 0 921 276 54 27 chr12 1800153 1800558 -141985897 + L1ME2 LINE L1 38 453 -5617 289 271 140 0 chr12 1800944 1801051 -141985404 + L1ME2 LINE L1 709 830 -5240 1360 289 55 25 chr12 1801052 1801689 -141984766 - MLT2F LTR ERVL -7 656 1 4573 147 53 95 chr12 1801733 1801766 -141984689 - L1MA9 LINE L1 -38 6274 6241 1820 159 39 9 chr12 1801766 1802100 -141984355 + MER2 DNA MER2_type 1 344 0 4573 147 53 95 chr12 1802100 1802244 -141984211 - L1MA9 LINE L1 -71 6241 6092 189 0 0 0 chr12 1802244 1802265 -141984190 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 4573 147 53 95 chr12 1802265 1803285 -141983170 - L1MA9 LINE L1 -220 6092 5108 1592 294 61 40 chr12 1803285 1803901 -141982554 + L1ME2 LINE L1 884 1527 -4734 2012 131 3 38 chr12 1803901 1804214 -141982241 + AluJo SINE Alu 1 302 -10 1592 294 61 40 chr12 1804214 1804504 -141981951 + L1ME2 LINE L1 1527 1809 -4452 1375 269 61 3 chr12 1804506 1805024 -141981431 + L1ME2 LINE L1 3737 4301 -1779 2479 215 71 21 chr12 1807120 1808120 -141978335 + L1ME2 LINE L1 4291 5447 -651 1636 143 87 4 chr12 1808120 1808410 -141978045 + AluSx SINE Alu 1 312 0 2479 215 71 21 chr12 1808410 1809059 -141977396 + L1ME2 LINE L1 5447 6062 -36 2398 109 0 3 chr12 1809090 1809403 -141977052 + AluSx SINE Alu 1 312 0 430 307 102 6 chr12 1809820 1809986 -141976469 - MIR SINE MIR -78 184 3 250 133 67 0 chr12 1810235 1810248 -141976207 + MER3 DNA MER1_type 37 52 -157 525 192 151 7 chr12 1810248 1810394 -141976061 - MER3 DNA MER1_type -2 207 41 408 264 88 0 chr12 1810827 1810918 -141975537 + MIR SINE MIR 2 100 -162 508 252 29 58 chr12 1811058 1811264 -141975191 + MIR SINE MIR 22 221 -41 332 263 12 12 chr12 1811387 1811467 -141974988 + MER5B DNA MER1_type 4 83 -95 1143 140 19 56 chr12 1811468 1811682 -141974773 - AluJo SINE Alu -22 290 85 479 245 0 0 chr12 1811682 1811780 -141974675 + MER5B DNA MER1_type 76 173 -5 1312 238 93 12 chr12 1812637 1813066 -141973389 - MLT1C LTR MaLR 0 467 4 297 267 164 48 chr12 1813289 1813454 -141973001 + L2 LINE L2 2546 2729 -585 240 314 105 42 chr12 1814258 1814449 -141972006 - L2 LINE L2 -135 3137 2935 214 306 74 8 chr12 1815146 1815267 -141971188 + MIR3 SINE MIR 66 194 -14 802 288 40 81 chr12 1815543 1815837 -141970618 - L2 LINE L2 0 3313 3041 868 119 0 35 chr12 1815837 1815980 -141970475 + L1MB5 LINE L1 6029 6166 -8 802 288 40 81 chr12 1815980 1816115 -141970340 - L2 LINE L2 -272 3041 2902 2169 142 0 0 chr12 1816127 1816430 -141970025 + AluSx SINE Alu 1 303 -9 273 386 0 15 chr12 1816537 1816669 -141969786 - MIR3 SINE MIR -3 205 76 247 284 0 0 chr12 1817369 1817443 -141969012 + L1M4 LINE L1 4513 4586 -1560 809 289 9 9 chr12 1817831 1818056 -141968399 - MIR SINE MIR -32 230 6 358 248 30 20 chr12 1818218 1818319 -141968136 + L1MC5 LINE L1 3854 3955 -2191 861 137 0 8 chr12 1818321 1818445 -141968010 - FLAM_C SINE Alu -20 123 1 1082 330 63 35 chr12 1818504 1819152 -141967303 + L1MC5 LINE L1 4026 4719 -1427 288 53 0 0 chr12 1819152 1819190 -141967265 + (CA)n Simple_repeat Simple_repeat 2 39 0 1082 330 63 35 chr12 1819190 1819640 -141966815 + L1MC5 LINE L1 4719 5155 -991 1364 203 21 21 chr12 1819650 1819931 -141966524 + AluJb SINE Alu 1 281 -31 2072 47 115 36 chr12 1819932 1820210 -141966245 - AluY SINE Alu -11 300 1 1817 263 116 74 chr12 1820360 1821928 -141964527 + L1MC5 LINE L1 5270 6771 -1190 607 200 17 0 chr12 1821928 1822070 -141964385 + FLAM_C SINE Alu 2 145 0 1817 263 116 74 chr12 1822070 1822634 -141963821 + L1MC5 LINE L1 6771 7310 -651 954 145 0 6 chr12 1822634 1822793 -141963662 + L1MB8 LINE L1 6010 6167 -11 1817 263 116 74 chr12 1822793 1823150 -141963305 + L1MC5 LINE L1 7310 7895 -66 235 225 73 15 chr12 1823162 1823247 -141963208 - MER5A DNA MER1_type -29 149 56 911 188 72 19 chr12 1824857 1825065 -141961390 + MER20 DNA MER1_type 1 219 0 184 98 24 24 chr12 1825415 1825456 -141960999 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 191 395 37 9 chr12 1827155 1827264 -141959191 - MIR3 SINE MIR -32 176 65 598 253 25 31 chr12 1827715 1827877 -141958578 - MIR SINE MIR -56 206 46 181 259 35 17 chr12 1830286 1830344 -141956111 - MIR SINE MIR -68 140 82 290 372 0 0 chr12 1830653 1830747 -141955708 + MER5A DNA MER1_type 12 105 -84 379 313 44 52 chr12 1830753 1831002 -141955453 - MIR SINE MIR -14 248 2 470 371 108 0 chr12 1831135 1831348 -141955107 - MIR SINE MIR -19 243 8 219 36 0 0 chr12 1835382 1835410 -141951045 + (TG)n Simple_repeat Simple_repeat 2 29 0 282 345 0 0 chr12 1836755 1836839 -141949616 - MIR SINE MIR -51 211 128 313 292 152 64 chr12 1837952 1838123 -141948332 + MIR SINE MIR 77 262 0 195 373 0 0 chr12 1838316 1838375 -141948080 - L2 LINE L2 0 3313 3255 796 301 22 6 chr12 1838424 1838663 -141947792 - MIR SINE MIR -14 248 15 191 300 114 0 chr12 1842032 1842102 -141944353 + MIR3 SINE MIR 120 197 -11 294 340 28 9 chr12 1844458 1844564 -141941891 + MIR SINE MIR 89 196 -66 212 296 14 28 chr12 1844948 1845019 -141941436 - MIR SINE MIR -147 115 46 507 228 144 0 chr12 1846447 1846601 -141939854 + MER5A DNA MER1_type 1 180 -9 467 337 51 6 chr12 1846733 1846908 -141939547 - MIR SINE MIR -59 203 21 221 179 0 18 chr12 1850258 1850314 -141936141 + GA-rich Low_complexity Low_complexity 4 58 0 1657 24 0 28 chr12 1851821 1852032 -141934423 - SVA Other Other 0 1386 1182 10894 35 45 5 chr12 1852047 1853371 -141933084 - SVA Other Other -2 1384 9 362 316 37 42 chr12 1853481 1853671 -141932784 + MIR3 SINE MIR 20 208 0 488 265 0 6 chr12 1853907 1854088 -141932367 + (TG)n Simple_repeat Simple_repeat 1 180 0 209 169 0 92 chr12 1854290 1854355 -141932100 + GA-rich Low_complexity Low_complexity 1 59 0 260 336 91 0 chr12 1854918 1855028 -141931427 - L3b LINE CR1 -173 1410 1291 810 291 202 7 chr12 1855192 1855641 -141930814 - L2 LINE L2 -10 3303 2943 2117 139 0 7 chr12 1855641 1855950 -141930505 + AluSx SINE Alu 1 307 -5 810 291 202 7 chr12 1855950 1856289 -141930166 - L2 LINE L2 -370 2943 2354 588 139 0 10 chr12 1856292 1856393 -141930062 + LTR12 LTR ERV1 1 100 -614 185 237 0 0 chr12 1856602 1856640 -141929815 + MIR3 SINE MIR 167 204 -4 191 211 0 0 chr12 1857192 1857230 -141929225 + MIR SINE MIR 108 145 -63 940 214 5 0 chr12 1857246 1857442 -141929013 - MER3 DNA MER1_type -3 206 10 796 199 130 0 chr12 1857459 1857620 -141928835 + MER5A DNA MER1_type 5 186 -3 406 289 95 40 chr12 1858059 1858283 -141928172 + MIR SINE MIR 18 262 0 400 232 42 18 chr12 1860005 1860173 -141926282 + (CA)n Simple_repeat Simple_repeat 1 172 0 186 296 214 0 chr12 1861404 1861502 -141924953 + MIR3 SINE MIR 52 170 -38 1066 236 28 8 chr12 1862318 1862572 -141923883 - MER58 DNA MER1_type -2161 259 1 214 268 0 18 chr12 1863125 1863181 -141923274 + L2 LINE L2 3213 3267 -5 859 238 112 59 chr12 1863352 1863860 -141922595 - MLT1F LTR MaLR -6 536 2 603 224 55 12 chr12 1863990 1864155 -141922300 + MER5A DNA MER1_type 14 185 -4 543 265 127 12 chr12 1866018 1866271 -141920184 - MLT1J LTR MaLR -202 309 28 387 0 0 0 chr12 1866668 1866711 -141919744 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 0 0 0 chr12 1868772 1868817 -141917638 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 108 0 27 chr12 1869147 1869184 -141917271 + (TC)n Simple_repeat Simple_repeat 1 36 0 411 277 96 12 chr12 1874307 1874473 -141911982 + MIR SINE MIR 23 202 -60 371 231 44 0 chr12 1874721 1874812 -141911643 - MER94 DNA DNA -17 117 23 333 165 39 107 chr12 1875693 1875796 -141910659 + MER21B LTR ERV1 1 96 -767 1388 231 95 16 chr12 1875799 1876483 -141909972 + MER21B LTR ERV1 16 792 -71 224 224 79 26 chr12 1878544 1878620 -141907835 - MIR SINE MIR -81 181 102 354 209 70 12 chr12 1878664 1878750 -141907705 - MIR SINE MIR -59 203 113 285 233 27 14 chr12 1878782 1878855 -141907600 + MIR SINE MIR 176 249 -13 196 277 112 30 chr12 1879981 1880095 -141906360 - MIR SINE MIR -62 146 33 183 212 0 0 chr12 1880385 1880418 -141906037 + L3b LINE CR1 1483 1515 -68 2167 95 7 3 chr12 1880533 1880827 -141905628 - AluSg SINE Alu -15 295 1 314 233 0 36 chr12 1881249 1881348 -141905107 + MIR SINE MIR 99 191 -61 326 243 133 46 chr12 1881400 1881618 -141904837 + L1 LINE L1 4197 4433 -1713 547 60 0 0 chr12 1881638 1881705 -141904750 - Alu SINE Alu -239 71 5 882 135 6 94 chr12 1881720 1881890 -141904565 - Tigger3(Golem) DNA MER2_type -3 3026 2872 348 310 0 0 chr12 1886264 1886351 -141900104 - MIR3 SINE MIR -27 181 95 806 257 25 33 chr12 1886360 1886605 -141899850 + MIR SINE MIR 20 262 0 196 364 0 15 chr12 1886635 1886701 -141899754 - MIR3 SINE MIR -140 68 4 225 100 0 0 chr12 1887175 1887205 -141899250 + AluSq SINE Alu 2 31 -102 1581 118 4 0 chr12 1887205 1887433 -141899022 + AluSq SINE Alu 72 300 -13 851 134 104 30 chr12 1887696 1887899 -141898556 + AluSg/x SINE Alu 137 351 0 457 262 81 12 chr12 1888096 1888268 -141898187 - MER112 DNA MER1_type -11 249 66 22 0 0 0 chr12 1889341 1889363 -141897092 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1890067 1890089 -141896366 + AT_rich Low_complexity Low_complexity 1 22 0 4327 171 64 15 chr12 1891213 1892367 -141894088 - L1MB7 LINE L1 -81 6103 4886 2041 94 87 3 chr12 1893171 1893459 -141892996 + AluSp SINE Alu 2 313 0 240 312 138 8 chr12 1893787 1893962 -141892493 + MIR3 SINE MIR 11 212 -50 1119 60 0 0 chr12 1895697 1895830 -141890625 + AluSc SINE Alu 1 133 -176 2233 77 0 0 chr12 1895830 1896103 -141890352 + AluSc SINE Alu 1 273 -36 24 0 0 0 chr12 1898422 1898446 -141888009 + AT_rich Low_complexity Low_complexity 1 24 0 469 255 64 19 chr12 1898459 1898616 -141887839 - MIR SINE MIR -50 212 49 371 273 142 34 chr12 1898768 1898944 -141887511 + MIR3 SINE MIR 14 208 0 1427 128 18 154 chr12 1899454 1899791 -141886664 - AluJo SINE Alu -11 291 1 575 108 151 58 chr12 1899799 1899938 -141886517 - MER106A DNA MER1_type -45 191 40 26 30 0 0 chr12 1900347 1900380 -141886075 + AT_rich Low_complexity Low_complexity 1 33 0 1727 121 4 19 chr12 1900655 1900912 -141885543 + AluJb SINE Alu 45 297 -15 1911 118 35 3 chr12 1900991 1901280 -141885175 + AluSq SINE Alu 1 298 -15 617 272 76 45 chr12 1902736 1903226 -141883229 + MER110 LTR ERV1 1 485 0 2453 75 7 3 chr12 1903538 1903845 -141882610 - AluSq SINE Alu -5 308 1 224 324 70 0 chr12 1904585 1904656 -141881799 + L2 LINE L2 2922 2997 -275 211 326 0 0 chr12 1904732 1904781 -141881674 + L2 LINE L2 3138 3186 -86 346 316 72 0 chr12 1905262 1905414 -141881041 - MIR SINE MIR 0 262 100 1673 244 85 25 chr12 1905759 1906242 -141880213 + L1ME3A LINE L1 5619 6130 -40 288 0 0 0 chr12 1906242 1906274 -141880181 + (TG)n Simple_repeat Simple_repeat 2 33 0 441 290 8 30 chr12 1906644 1906775 -141879680 - MIR3 SINE MIR -36 172 45 2047 143 0 3 chr12 1906843 1907137 -141879318 - AluJo SINE Alu -19 293 1 429 214 53 46 chr12 1907338 1907469 -141878986 - MIR SINE MIR -8 254 123 230 233 20 42 chr12 1907558 1907645 -141878810 - MER5A DNA MER1_type 0 189 87 290 312 58 7 chr12 1908049 1908187 -141878268 + MIR SINE MIR 118 262 0 39 60 0 0 chr12 1908474 1908541 -141877914 + AT_rich Low_complexity Low_complexity 1 67 0 944 306 44 26 chr12 1908629 1909100 -141877355 - L2 LINE L2 -234 3038 2553 3905 175 29 7 chr12 1909250 1909591 -141876864 + L1MB8 LINE L1 5431 5763 -415 2397 184 65 50 chr12 1909591 1910133 -141876322 - MER44D DNA MER2_type 0 605 1 3905 175 29 7 chr12 1910133 1910511 -141875944 + L1MB8 LINE L1 5763 6166 -12 38 61 0 0 chr12 1910644 1910710 -141875745 + AT_rich Low_complexity Low_complexity 1 66 0 235 0 57 0 chr12 1910768 1910803 -141875652 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2046 121 0 4 chr12 1910807 1911088 -141875367 - AluSg SINE Alu -30 280 1 236 305 46 22 chr12 1911120 1911209 -141875246 - MER5A DNA MER1_type -32 146 50 274 294 124 41 chr12 1911810 1912000 -141874455 + MIR SINE MIR 3 209 -53 330 305 12 0 chr12 1912364 1912446 -141874009 + MIR3 SINE MIR 122 204 -4 1141 256 150 34 chr12 1913809 1914363 -141872092 + L2 LINE L2 2290 2907 -407 26 23 0 23 chr12 1914363 1914383 -141872072 + AT_rich Low_complexity Low_complexity 1 20 -23 2243 100 3 0 chr12 1914383 1914672 -141871783 + AluSx SINE Alu 1 290 -22 26 23 0 23 chr12 1914672 1914695 -141871760 + AT_rich Low_complexity Low_complexity 20 43 0 305 221 0 29 chr12 1914774 1914842 -141871613 + L2 LINE L2 2913 2978 -335 451 268 121 17 chr12 1914860 1915091 -141871364 + MER112 DNA MER1_type 6 260 0 2103 116 7 7 chr12 1915457 1915751 -141870704 + AluSc SINE Alu 1 294 -15 1839 106 76 0 chr12 1915819 1916083 -141870372 + AluSx SINE Alu 1 284 -28 474 65 0 0 chr12 1916083 1916145 -141870310 + (TAG)n Simple_repeat Simple_repeat 1 62 0 320 270 41 56 chr12 1916633 1916829 -141869626 + L1ME4a LINE L1 5772 5964 -157 242 295 90 0 chr12 1917067 1917145 -141869310 - MIR SINE MIR -54 208 124 21 0 0 0 chr12 1917983 1918004 -141868451 + AT_rich Low_complexity Low_complexity 1 21 0 221 266 210 42 chr12 1918059 1918202 -141868253 - MIR SINE MIR -10 252 86 963 176 6 17 chr12 1918435 1918604 -141867851 + AluSg/x SINE Alu 135 303 -7 2057 93 31 71 chr12 1918604 1918926 -141867529 + AluSc SINE Alu 1 309 0 1636 162 7 48 chr12 1919016 1919325 -141867130 + AluJo SINE Alu 4 299 -13 298 309 96 24 chr12 1919823 1920166 -141866289 + L1M4 LINE L1 4065 4435 -1711 511 234 66 51 chr12 1920173 1920247 -141866208 + L1M4 LINE L1 4245 4316 -1830 1722 168 0 36 chr12 1920247 1920556 -141865899 - AluJo SINE Alu -14 298 1 511 234 66 51 chr12 1920556 1920737 -141865718 + L1M4 LINE L1 4316 4504 -1642 1247 193 23 19 chr12 1920741 1921000 -141865455 + AluJo SINE Alu 43 302 -10 850 196 164 32 chr12 1921000 1921311 -141865144 + L1M4 LINE L1 4495 4846 -1300 609 161 153 0 chr12 1921324 1921461 -141864994 + MER21A LTR ERV1 1 158 -773 2993 150 38 32 chr12 1921552 1922105 -141864350 + MER21A LTR ERV1 376 931 0 689 184 6 81 chr12 1922107 1922281 -141864174 + L1M4 LINE L1 4859 5019 -1127 2554 65 0 0 chr12 1922285 1922593 -141863862 + AluY SINE Alu 1 308 -3 1263 257 31 38 chr12 1922593 1923258 -141863197 + L1M4b LINE L1 1550 2307 -4652 1805 219 65 80 chr12 1923409 1923743 -141862712 - L1MEc LINE L1 -3167 3048 2710 182 37 37 0 chr12 1923743 1923770 -141862685 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1805 219 65 80 chr12 1923770 1923798 -141862657 - L1MEc LINE L1 -3505 2710 2683 1571 202 3 21 chr12 1923798 1924080 -141862375 - AluJo SINE Alu -30 282 6 1805 219 65 80 chr12 1924080 1924319 -141862136 - L1MEc LINE L1 -3532 2683 2495 1785 130 123 0 chr12 1924319 1924595 -141861860 - AluSx SINE Alu -2 310 1 1805 219 65 80 chr12 1924595 1924784 -141861671 - L1MEc LINE L1 -3720 2495 2305 4976 152 6 4 chr12 1924888 1925711 -141860744 + HSMAR2 DNA Mariner 1 825 -477 2162 104 53 20 chr12 1925708 1926064 -141860391 + HSMAR2 DNA Mariner 934 1301 -1 * 1191 137 0 6 chr12 1926196 1926371 -141860084 + AluSx SINE Alu 1 174 -138 2214 102 7 0 chr12 1926429 1926734 -141859721 + AluY SINE Alu 1 307 -4 21 57 0 0 chr12 1926948 1926983 -141859472 + AT_rich Low_complexity Low_complexity 1 35 0 1404 172 62 17 chr12 1927147 1927437 -141859018 - AluJo SINE Alu -7 305 3 575 108 0 0 chr12 1927499 1927582 -141858873 - Alu SINE Alu -8 303 221 808 165 0 0 chr12 1927590 1927723 -141858732 - AluSq/x SINE Alu -179 133 1 1873 142 77 19 chr12 1927978 1928303 -141858152 - MER2 DNA MER2_type 0 344 1 1772 157 17 7 chr12 1928440 1928739 -141857716 + AluJo SINE Alu 1 302 -10 785 323 35 25 chr12 1929376 1929775 -141856680 + L2 LINE L2 2467 2869 -445 365 295 162 26 chr12 1929845 1930116 -141856339 + L2 LINE L2 2988 3295 -18 1977 184 24 8 chr12 1930205 1930586 -141855869 + MLT1B LTR MaLR 4 390 0 2203 94 0 7 chr12 1930716 1931014 -141855441 - AluSx SINE Alu -16 296 1 1178 206 81 31 chr12 1931104 1931425 -141855030 - MER58B DNA MER1_type -1 340 4 1119 315 109 24 chr12 1932338 1932887 -141853568 - L3 LINE CR1 -442 1135 540 189 319 56 14 chr12 1932945 1933017 -141853438 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1934610 1934689 -141851766 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1935219 1935342 -141851113 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1936105 1936256 -141850199 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1938426 1938828 -141847627 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1939649 1939920 -141846535 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1940135 1940184 -141846271 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1940299 1940432 -141846023 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1940465 1940557 -141845898 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1944835 1945185 -141841270 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1945257 1945825 -141840630 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1945996 1946017 -141840438 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1946017 1946136 -141840319 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1946366 1949781 -141836674 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1949781 1950045 -141836410 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1950045 1952166 -141834289 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1952166 1952459 -141833996 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1952459 1952909 -141833546 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1952909 1952932 -141833523 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1952932 1953127 -141833328 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1953127 1953176 -141833279 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1953176 1953566 -141832889 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1953570 1953648 -141832807 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1953648 1954052 -141832403 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1954054 1954307 -141832148 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1954312 1954720 -141831735 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1954709 1954894 -141831561 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1954894 1954917 -141831538 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1954917 1955164 -141831291 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1955198 1955227 -141831228 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1955237 1955640 -141830815 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1955665 1956497 -141829958 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1956506 1956658 -141829797 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1956658 1956955 -141829500 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1956955 1957125 -141829330 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1957130 1961045 -141825410 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1961045 1961499 -141824956 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1961487 1963016 -141823439 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1963159 1963214 -141823241 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1963747 1963774 -141822681 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1965695 1966012 -141820443 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1966228 1966332 -141820123 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1966534 1966678 -141819777 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1966684 1967082 -141819373 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1967098 1967538 -141818917 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1967542 1967834 -141818621 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1967913 1968052 -141818403 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1969899 1970036 -141816419 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1970274 1970375 -141816080 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1971196 1971310 -141815145 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1971474 1971608 -141814847 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1971622 1971680 -141814775 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1972374 1972414 -141814041 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1972522 1972646 -141813809 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1972799 1972855 -141813600 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1973632 1973816 -141812639 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1975650 1976704 -141809751 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1976711 1976863 -141809592 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1976863 1977400 -141809055 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1977400 1977490 -141808965 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1977815 1978035 -141808420 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1978050 1978106 -141808349 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978144 1978200 -141808255 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978238 1978294 -141808161 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978332 1978388 -141808067 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978426 1978482 -141807973 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978520 1978576 -141807879 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1978772 1978984 -141807471 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1979232 1979374 -141807081 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1979517 1979601 -141806854 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1979863 1980367 -141806088 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1980577 1980884 -141805571 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1981316 1981351 -141805104 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1981350 1981397 -141805058 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1982173 1982346 -141804109 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1982607 1982719 -141803736 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1982721 1982997 -141803458 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1983012 1983065 -141803390 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1983184 1983251 -141803204 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1983495 1983646 -141802809 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1983738 1983776 -141802679 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1985275 1985436 -141801019 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1985747 1985839 -141800616 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1986256 1986622 -141799833 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1986887 1987039 -141799416 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1987226 1987458 -141798997 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1987459 1987523 -141798932 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1988015 1988181 -141798274 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1988231 1988535 -141797920 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1989409 1989575 -141796880 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1989598 1989706 -141796749 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1989706 1989767 -141796688 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1990081 1990225 -141796230 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1990874 1990992 -141795463 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1991344 1991365 -141795090 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1991710 1991757 -141794698 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1991761 1992018 -141794437 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1995887 1995924 -141790531 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1996975 1997113 -141789342 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1997137 1997322 -141789133 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1997325 1998308 -141788147 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 1998309 2002545 -141783910 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2003209 2003508 -141782947 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2004375 2004485 -141781970 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2004807 2005030 -141781425 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2007174 2007467 -141778988 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2007510 2007810 -141778645 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2008195 2008330 -141778125 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2008682 2008908 -141777547 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2009678 2009707 -141776748 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2010421 2010732 -141775723 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2011378 2011671 -141774784 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2013867 2014058 -141772397 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2014457 2014556 -141771899 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2014610 2014675 -141771780 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2014675 2014751 -141771704 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2014752 2014810 -141771645 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2014805 2014881 -141771574 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2014882 2014946 -141771509 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2014935 2015011 -141771444 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2015000 2015076 -141771379 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2015065 2015141 -141771314 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2015130 2015206 -141771249 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2015195 2015271 -141771184 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2015260 2015336 -141771119 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2015325 2015390 -141771065 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2015390 2015466 -141770989 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2015467 2015520 -141770935 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2015520 2015596 -141770859 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2015650 2016198 -141770257 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2016198 2016497 -141769958 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2016497 2017205 -141769250 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2017224 2017373 -141769082 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2018206 2018362 -141768093 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2018441 2018588 -141767867 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2018484 2018967 -141767488 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2019301 2019418 -141767037 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2019465 2019778 -141766677 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2019747 2020437 -141766018 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2020796 2020978 -141765477 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2020979 2021199 -141765256 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2021611 2021777 -141764678 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2021920 2021972 -141764483 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2022408 2022635 -141763820 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2024603 2024889 -141761566 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2025262 2025285 -141761170 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2026066 2026086 -141760369 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2029020 2029135 -141757320 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2029302 2029400 -141757055 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2030550 2030671 -141755784 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2033356 2033444 -141753011 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2035051 2035552 -141750903 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2035552 2035832 -141750623 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2035833 2036132 -141750323 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2036132 2036364 -141750091 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2036372 2036828 -141749627 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2036854 2037106 -141749349 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2037484 2037527 -141748928 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2038090 2038212 -141748243 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2038283 2038512 -141747943 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2038683 2038728 -141747727 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2038728 2039200 -141747255 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2039200 2042295 -141744160 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2042329 2042633 -141743822 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2042746 2042854 -141743601 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2043242 2043428 -141743027 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2043946 2044612 -141741843 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2044627 2044974 -141741481 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2045123 2045228 -141741227 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2045623 2045744 -141740711 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2045770 2045862 -141740593 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2045871 2045953 -141740502 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2045953 2046257 -141740198 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2046597 2046802 -141739653 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2047741 2047850 -141738605 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2047892 2048197 -141738258 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2048346 2048374 -141738081 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2050148 2050178 -141736277 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2050271 2050306 -141736149 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2052297 2052413 -141734042 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2052883 2053040 -141733415 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2053040 2053282 -141733173 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2053282 2053306 -141733149 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2053767 2054061 -141732394 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2055567 2055753 -141730702 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2055950 2056268 -141730187 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2057275 2057574 -141728881 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2058149 2058220 -141728235 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2058327 2058454 -141728001 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2061406 2062539 -141723916 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2062560 2062648 -141723807 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2062648 2062948 -141723507 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2062948 2063013 -141723442 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2063390 2063470 -141722985 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2064272 2064327 -141722128 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2064622 2064855 -141721600 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2064863 2064911 -141721544 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2064990 2065059 -141721396 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2066517 2066595 -141719860 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2066669 2066726 -141719729 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2067387 2067697 -141718758 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2068019 2068099 -141718356 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2068829 2069028 -141717427 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2069070 2069200 -141717255 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2069594 2069847 -141716608 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2070944 2071108 -141715347 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2072017 2072062 -141714393 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2072111 2072265 -141714190 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2072289 2072475 -141713980 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2072500 2072561 -141713894 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2072715 2072883 -141713572 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2072945 2073246 -141713209 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2073320 2073458 -141712997 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2073556 2073697 -141712758 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2074497 2074571 -141711884 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2074586 2075010 -141711445 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2075700 2076010 -141710445 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2076010 2076154 -141710301 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2076527 2076593 -141709862 + CT-rich Low_complexity Low_complexity 1 67 0 773 284 28 24 chr12 2076688 2076942 -141709513 - MIR SINE MIR 0 262 8 545 302 174 12 chr12 2077265 2077507 -141708948 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2077719 2077842 -141708613 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2077853 2077918 -141708537 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2077918 2078211 -141708244 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2078211 2078474 -141707981 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2078478 2078984 -141707471 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2078984 2079265 -141707190 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2079265 2079402 -141707053 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2079467 2079634 -141706821 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2080442 2080478 -141705977 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2080869 2081182 -141705273 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2084895 2085044 -141701411 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2085151 2085402 -141701053 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2085595 2085654 -141700801 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2085791 2086142 -141700313 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2088165 2088231 -141698224 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2088488 2088549 -141697906 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2090154 2090192 -141696263 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2090297 2090565 -141695890 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2090571 2090806 -141695649 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2090820 2091051 -141695404 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2091235 2091355 -141695100 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2091630 2091694 -141694761 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2092203 2092446 -141694009 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2092993 2093284 -141693171 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2094264 2094423 -141692032 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2095990 2096277 -141690178 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2097104 2097286 -141689169 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2097380 2097480 -141688975 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2097788 2098096 -141688359 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2098416 2098986 -141687469 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2099080 2099326 -141687129 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2099789 2100150 -141686305 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2100160 2100475 -141685980 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2101891 2102054 -141684401 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2102277 2102720 -141683735 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2102891 2103005 -141683450 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2103606 2103765 -141682690 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2103771 2103814 -141682641 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2103819 2104039 -141682416 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2104110 2104156 -141682299 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2104213 2104775 -141681680 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2105373 2105394 -141681061 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2105471 2105688 -141680767 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2105692 2105898 -141680557 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2105906 2105993 -141680462 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2106054 2106117 -141680338 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2106743 2106997 -141679458 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2107422 2108486 -141677969 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2109012 2109177 -141677278 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2109204 2109238 -141677217 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2109271 2109307 -141677148 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2109322 2109372 -141677083 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2109414 2109464 -141676991 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2109548 2109593 -141676862 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2109692 2109735 -141676720 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2110194 2110308 -141676147 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2110478 2110636 -141675819 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2112691 2112759 -141673696 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2113009 2113084 -141673371 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2116213 2116294 -141670161 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2117657 2117752 -141668703 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2118734 2118967 -141667488 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2119442 2119644 -141666811 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2119674 2119969 -141666486 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2120191 2120467 -141665988 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2121956 2122653 -141663802 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2123970 2124026 -141662429 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2126338 2126625 -141659830 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2126904 2127369 -141659086 - L1MEd LINE L1 -746 1744 1226 312 148 25 25 chr12 2127371 2127452 -141659003 + CT-rich Low_complexity Low_complexity 1 81 0 707 185 11 11 chr12 2127465 2127643 -141658812 + CT-rich Low_complexity Low_complexity 1 178 0 378 120 0 0 chr12 2127661 2127736 -141658719 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2127761 2128046 -141658409 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2128051 2128320 -141658135 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2128482 2128554 -141657901 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2128690 2128733 -141657722 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2128733 2129020 -141657435 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2129348 2129410 -141657045 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2129437 2129541 -141656914 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2130370 2130528 -141655927 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2130829 2131002 -141655453 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2131943 2132086 -141654369 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2132988 2133049 -141653406 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2133982 2134089 -141652366 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2134177 2134293 -141652162 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2134449 2134520 -141651935 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2134520 2134895 -141651560 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2134895 2135222 -141651233 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2135222 2135815 -141650640 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2135815 2135829 -141650626 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2135829 2136191 -141650264 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2136191 2136230 -141650225 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2136356 2136499 -141649956 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2136499 2136811 -141649644 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2136811 2136840 -141649615 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2136840 2137151 -141649304 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2137151 2137809 -141648646 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2137809 2138105 -141648350 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2138105 2138185 -141648270 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2138429 2138570 -141647885 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2138666 2138759 -141647696 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2140061 2140116 -141646339 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2140374 2140456 -141645999 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2140513 2140542 -141645913 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2140704 2141685 -141644770 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2141775 2142771 -141643684 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2143032 2143460 -141642995 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2143994 2144322 -141642133 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2144448 2144646 -141641809 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2144908 2145136 -141641319 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2145883 2146011 -141640444 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2146137 2146273 -141640182 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2146273 2146573 -141639882 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2146573 2146831 -141639624 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2146831 2147138 -141639317 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2147138 2147571 -141638884 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2147831 2148265 -141638190 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2148355 2148530 -141637925 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2149247 2149366 -141637089 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2149863 2149936 -141636519 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2150596 2150650 -141635805 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2151053 2151226 -141635229 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2151540 2151658 -141634797 - MIR SINE MIR -132 130 1 28290 23 0 0 chr12 2152333 2156599 -141629856 + L1PA2 LINE L1 1908 6548 -1 195 42 0 0 chr12 2156689 2156713 -141629742 + (A)n Simple_repeat Simple_repeat 1 24 0 278 229 73 31 chr12 2156716 2156812 -141629643 + MIR SINE MIR 163 262 0 428 330 73 18 chr12 2157902 2158120 -141628335 + MIR SINE MIR 5 234 -28 2494 66 0 3 chr12 2158192 2158495 -141627960 + AluY SINE Alu 1 302 -9 330 288 128 40 chr12 2158663 2158788 -141627667 + MIR3 SINE MIR 15 150 -58 422 270 10 0 chr12 2158821 2158921 -141627534 - L2 LINE L2 -5 3308 3208 250 158 0 0 chr12 2159067 2159105 -141627350 - MIR SINE MIR -146 116 79 210 290 14 14 chr12 2159151 2159220 -141627235 + MER5B DNA MER1_type 43 111 -67 306 280 43 0 chr12 2160068 2160161 -141626294 - MIR SINE MIR -32 230 134 493 283 96 0 chr12 2161160 2161326 -141625129 + MER5A DNA MER1_type 6 187 -2 229 337 46 62 chr12 2161627 2162131 -141624324 + L2 LINE L2 1926 2421 -893 369 0 0 0 chr12 2162752 2162793 -141623662 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 186 44 50 chr12 2162938 2163104 -141623351 - MIR SINE MIR 0 262 98 287 260 89 107 chr12 2163404 2163505 -141622950 - MIR SINE MIR -76 186 88 2539 73 0 0 chr12 2163505 2163808 -141622647 - AluY SINE Alu -8 303 1 287 260 89 107 chr12 2163808 2163875 -141622580 - MIR SINE MIR -174 88 21 228 241 107 88 chr12 2163886 2164045 -141622410 + MER5A DNA MER1_type 1 159 -19 205 332 37 32 chr12 2164110 2164300 -141622155 - L2 LINE L2 -1050 2264 2074 490 252 8 0 chr12 2164561 2164692 -141621763 - L1MB7 LINE L1 -12 6172 6041 369 0 0 0 chr12 2166205 2166246 -141620209 + (CA)n Simple_repeat Simple_repeat 2 42 0 627 240 137 11 chr12 2167668 2167843 -141618612 - MIR3 SINE MIR -3 205 9 188 254 18 36 chr12 2167885 2167940 -141618515 - L3 LINE CR1 -7 1570 1517 236 313 10 31 chr12 2168056 2168152 -141618303 - MIR SINE MIR -149 113 20 551 227 123 19 chr12 2168286 2168440 -141618015 - MIR SINE MIR -91 171 2 349 293 104 12 chr12 2169283 2169447 -141617008 + MIR SINE MIR 22 202 -6 2059 127 0 7 chr12 2169611 2169916 -141616539 - AluSx SINE Alu 0 303 1 283 272 136 8 chr12 2170106 2170231 -141616224 + MIR3 SINE MIR 38 178 -30 2228 84 20 17 chr12 2170233 2170531 -141615924 + AluY SINE Alu 1 299 -12 303 302 126 6 chr12 2170673 2170832 -141615623 + MER5B DNA MER1_type 1 178 0 526 252 22 7 chr12 2171113 2171248 -141615207 - MER5A DNA MER1_type -34 155 19 186 119 143 24 chr12 2172256 2172298 -141614157 + MIR3 SINE MIR 137 183 -25 717 229 75 87 chr12 2172353 2172886 -141613569 + MLT1G LTR MaLR 1 588 -2 258 204 0 0 chr12 2173886 2173935 -141612520 + MLT1K LTR MaLR 525 573 -15 263 299 0 13 chr12 2174110 2174187 -141612268 + MER117 DNA MER1_type 122 197 0 467 226 9 19 chr12 2176080 2176186 -141610269 + MER3 DNA MER1_type 1 105 -104 670 281 98 62 chr12 2177113 2177558 -141608897 + L2 LINE L2 2575 3040 -232 737 248 14 37 chr12 2178771 2178985 -141607470 + MER3 DNA MER1_type 1 209 0 10005 75 15 1 chr12 2182213 2184313 -141602142 + L1PA7 LINE L1 4034 6152 -2 194 281 225 0 chr12 2184556 2184645 -141601810 + L2 LINE L2 3200 3308 -5 335 310 71 7 chr12 2184758 2184913 -141601542 + L2 LINE L2 3149 3313 0 486 311 52 35 chr12 2185589 2185871 -141600584 + L1ME4a LINE L1 5635 5911 -210 1357 126 215 19 chr12 2185871 2186132 -141600323 - AluJb SINE Alu 0 312 1 1562 136 26 49 chr12 2186132 2186396 -141600059 - AluJb SINE Alu -15 297 40 486 311 52 35 chr12 2186396 2186407 -141600048 + L1ME4a LINE L1 5911 5920 -201 2279 96 0 63 chr12 2186407 2186739 -141599716 - AluSx SINE Alu -1 311 1 486 311 52 35 chr12 2186739 2186790 -141599665 + L1ME4a LINE L1 5920 5987 -134 866 283 14 5 chr12 2186834 2187053 -141599402 + MIR SINE MIR 2 222 -40 298 321 30 15 chr12 2187938 2188069 -141598386 + MIR SINE MIR 79 211 -51 507 357 33 0 chr12 2188777 2188959 -141597496 + MIR3 SINE MIR 21 208 0 4004 148 35 20 chr12 2189269 2189457 -141596998 + L1MB4 LINE L1 5415 5599 -581 2573 58 0 13 chr12 2189457 2189768 -141596687 + AluY SINE Alu 1 307 -4 4004 148 35 20 chr12 2189768 2190333 -141596122 + L1MB4 LINE L1 5599 6179 -1 305 294 64 9 chr12 2190833 2190942 -141595513 + L2 LINE L2 3155 3269 -3 13666 49 77 4 chr12 2191010 2192842 -141593613 - L1P LINE L1 -4179 1967 2 657 235 29 0 chr12 2192861 2192997 -141593458 - MIR SINE MIR -117 145 6 189 225 96 88 chr12 2193300 2193411 -141593044 + MER5B DNA MER1_type 21 122 -56 473 299 61 18 chr12 2193710 2193903 -141592552 + MIR SINE MIR 11 211 -51 728 203 101 0 chr12 2193948 2194086 -141592369 + AluJo SINE Alu 125 276 -36 1284 76 5 5 chr12 2195197 2195381 -141591074 + MSTB1 LTR MaLR 249 432 0 1592 206 28 30 chr12 2195536 2195934 -141590521 - MLT1C LTR MaLR 0 467 71 291 246 0 0 chr12 2196877 2196934 -141589521 + L2 LINE L2 3255 3311 -2 427 310 0 49 chr12 2196980 2197183 -141589272 + MIR3 SINE MIR 1 193 -15 485 285 112 75 chr12 2197227 2197719 -141588736 - L2 LINE L2 0 3313 2804 6441 137 37 44 chr12 2198725 2199496 -141586959 + Tigger3b DNA MER2_type 1 763 -2265 2293 86 27 0 chr12 2199496 2199788 -141586667 - AluSx SINE Alu -12 300 1 6441 137 37 44 chr12 2199788 2200254 -141586201 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2200952 2201064 -141585391 - L2 LINE L2 -1 3312 3180 275 274 0 0 chr12 2202088 2202150 -141584305 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2202408 2202588 -141583867 + MIR SINE MIR 77 262 0 192 246 53 18 chr12 2202821 2202878 -141583577 - L2 LINE L2 -243 3070 3012 1528 161 19 8 chr12 2205072 2205332 -141581123 - AluJo SINE Alu -16 296 34 365 229 0 62 chr12 2207688 2207784 -141578671 - MIR3 SINE MIR -11 197 108 928 263 92 4 chr12 2208721 2209002 -141577453 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2209199 2209229 -141577226 + AT_rich Low_complexity Low_complexity 1 30 0 1725 102 57 3 chr12 2209825 2210108 -141576347 - L1MB3 LINE L1 0 6183 5886 223 363 0 0 chr12 2211787 2211867 -141574588 - MIR3 SINE MIR -19 189 110 209 308 19 75 chr12 2211866 2211973 -141574482 + MIR3 SINE MIR 81 181 -27 * 312 279 21 21 chr12 2212513 2212653 -141573802 + L1ME3A LINE L1 5817 5956 -214 308 226 32 0 chr12 2212894 2212987 -141573468 + HAL1 LINE L1 45 140 -2367 2450 263 114 33 chr12 2213433 2213631 -141572824 + HAL1 LINE L1 154 335 -2172 881 141 49 5 chr12 2213631 2213815 -141572640 + L1MA8 LINE L1 6098 6289 -2 2450 263 114 33 chr12 2213815 2214817 -141571638 + HAL1 LINE L1 335 1451 -1056 1389 148 14 5 chr12 2214817 2215033 -141571422 + AluJb SINE Alu 1 218 -94 1058 217 84 49 chr12 2215047 2215393 -141571062 + HAL1 LINE L1 1427 1784 -723 606 268 156 22 chr12 2215417 2215731 -141570724 + HAL1 LINE L1 2129 2484 -23 1870 129 11 11 chr12 2215732 2216012 -141570443 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2216012 2216035 -141570420 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2370 99 6 6 chr12 2216111 2216424 -141570031 - AluSq SINE Alu 0 313 1 204 245 0 19 chr12 2216467 2216520 -141569935 - L2 LINE L2 0 3313 3262 239 188 146 0 chr12 2216807 2216855 -141569600 + L2 LINE L2 3213 3267 -5 2309 113 0 0 chr12 2217331 2217640 -141568815 - AluSg SINE Alu -1 309 1 215 132 0 26 chr12 2218563 2218601 -141567854 + MIR SINE MIR 117 153 -109 1758 95 4 22 chr12 2219510 2219742 -141566713 + AluSp SINE Alu 74 301 -12 453 326 18 2 chr12 2219797 2219980 -141566475 - MIR SINE MIR -63 145 5 475 217 217 31 chr12 2220839 2221000 -141565455 + MIR3 SINE MIR 3 193 -15 561 301 119 4 chr12 2221177 2221403 -141565052 + MIR SINE MIR 3 254 -8 190 255 92 78 chr12 2221962 2222103 -141564352 + MIR3 SINE MIR 6 148 -60 204 40 0 0 chr12 2222248 2222273 -141564182 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2223105 2223269 -141563186 + MIR SINE MIR 105 261 -1 180 320 301 4 chr12 2223579 2223838 -141562617 - L2 LINE L2 -1 3271 2936 1778 256 82 25 chr12 2223839 2224484 -141561971 - L1ME LINE L1 -5327 743 62 237 360 98 12 chr12 2224650 2224814 -141561641 - L2 LINE L2 -480 2834 2657 316 222 14 14 chr12 2224847 2224919 -141561536 + MIR3 SINE MIR 121 192 -16 316 302 16 62 chr12 2226510 2226639 -141559816 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2228020 2228090 -141558365 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2228122 2228470 -141557985 - L2 LINE L2 -1 3312 2921 310 253 50 30 chr12 2228567 2228666 -141557789 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2230254 2230337 -141556118 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2230384 2230472 -141555983 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2230937 2231140 -141555315 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2231140 2231594 -141554861 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2231594 2232380 -141554075 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2232398 2233012 -141553443 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2233981 2234149 -141552306 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2234157 2234457 -141551998 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2235300 2235605 -141550850 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2235956 2236022 -141550433 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2237169 2237411 -141549044 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2237444 2237596 -141548859 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2237707 2237775 -141548680 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2237880 2238626 -141547829 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2238652 2238676 -141547779 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2239468 2239535 -141546920 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2239558 2239693 -141546762 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2239720 2239768 -141546687 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2239905 2240044 -141546411 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2241145 2241282 -141545173 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2241913 2242293 -141544162 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2243209 2243428 -141543027 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2243641 2243809 -141542646 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2245331 2245639 -141540816 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2247029 2247210 -141539245 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2247229 2247606 -141538849 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2248034 2248210 -141538245 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2248241 2248421 -141538034 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2248435 2248615 -141537840 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2249127 2249233 -141537222 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2249693 2249998 -141536457 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2250192 2250486 -141535969 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2250625 2250916 -141535539 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2250950 2250988 -141535467 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2251850 2252018 -141534437 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2252334 2252517 -141533938 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2255611 2255759 -141530696 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2255759 2256190 -141530265 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2256190 2256313 -141530142 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2256316 2256427 -141530028 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2256472 2256654 -141529801 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2256804 2256858 -141529597 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2256858 2257080 -141529375 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2257080 2257381 -141529074 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2258159 2258256 -141528199 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2258285 2258487 -141527968 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2258682 2258805 -141527650 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2260570 2260873 -141525582 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2260875 2261471 -141524984 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2261917 2262102 -141524353 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2262223 2262564 -141523891 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2262926 2263106 -141523349 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2264048 2264364 -141522091 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2264646 2264712 -141521743 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2266506 2266552 -141519903 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2268235 2268541 -141517914 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2269242 2269359 -141517096 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2270669 2270751 -141515704 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2270785 2270973 -141515482 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2270959 2271085 -141515370 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2273120 2273301 -141513154 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2273461 2273971 -141512484 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2274269 2274365 -141512090 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2274534 2274708 -141511747 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2276773 2276896 -141509559 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2277272 2277946 -141508509 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2278063 2278664 -141507791 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2278810 2279018 -141507437 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2280102 2280213 -141506242 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2280367 2280408 -141506047 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2280819 2280883 -141505572 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2281522 2281655 -141504800 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2282641 2282694 -141503761 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2282796 2282971 -141503484 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2283860 2284063 -141502392 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2284243 2284414 -141502041 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2284759 2284968 -141501487 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2285604 2285774 -141500681 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2285925 2286504 -141499951 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2287276 2287503 -141498952 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2287650 2287816 -141498639 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2287954 2288091 -141498364 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2288451 2289624 -141496831 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2289847 2289961 -141496494 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2292394 2292589 -141493866 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2292688 2292853 -141493602 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2295432 2295613 -141490842 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2297702 2297895 -141488560 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2298297 2298404 -141488051 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2298885 2299082 -141487373 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2299266 2299303 -141487152 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2299335 2299514 -141486941 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2300077 2300212 -141486243 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2301986 2302023 -141484432 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2302138 2302469 -141483986 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2303003 2303227 -141483228 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2305315 2305518 -141480937 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2305595 2305784 -141480671 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2305784 2306019 -141480436 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2306019 2306082 -141480373 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2306115 2306215 -141480240 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2306286 2306407 -141480048 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2306407 2306628 -141479827 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2307233 2307353 -141479102 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2308381 2308429 -141478026 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2310120 2310233 -141476222 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2310249 2310343 -141476112 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2311265 2311343 -141475112 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2311589 2311703 -141474752 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2312230 2312337 -141474118 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2312659 2312792 -141473663 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2313256 2313385 -141473070 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2313544 2313847 -141472608 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2313856 2314180 -141472275 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2314393 2314453 -141472002 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2315044 2315184 -141471271 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2315656 2315834 -141470621 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2316257 2316441 -141470014 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2316715 2317025 -141469430 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2317148 2317323 -141469132 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2317323 2317469 -141468986 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2317469 2317782 -141468673 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2317782 2318109 -141468346 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2318109 2318170 -141468285 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2319363 2319782 -141466673 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2319750 2320416 -141466039 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2320899 2321011 -141465444 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2322301 2322395 -141464060 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2323141 2323263 -141463192 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2323312 2323443 -141463012 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2323596 2323709 -141462746 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2323797 2323927 -141462528 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2324073 2324148 -141462307 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2326181 2326660 -141459795 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2327979 2328138 -141458317 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2328138 2328422 -141458033 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2328422 2328494 -141457961 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2329584 2329799 -141456656 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2329826 2329864 -141456591 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2331109 2331282 -141455173 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2332510 2332550 -141453905 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2332563 2332609 -141453846 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2332667 2332781 -141453674 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2333598 2333739 -141452716 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2333855 2333949 -141452506 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2334780 2335718 -141450737 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2335723 2335983 -141450472 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2335982 2336187 -141450268 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2336237 2336269 -141450186 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2336274 2336495 -141449960 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2336496 2336658 -141449797 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2336883 2337059 -141449396 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2337290 2337488 -141448967 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2337488 2337654 -141448801 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2337654 2338554 -141447901 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2339341 2339590 -141446865 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2339591 2339727 -141446728 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2339746 2339835 -141446620 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2340072 2340150 -141446305 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2340207 2340304 -141446151 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2341778 2341922 -141444533 - MER63 DNA MER1_type -68 768 1 186 176 194 46 chr12 2343139 2343247 -141443208 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2344114 2344187 -141442268 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2344207 2344380 -141442075 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2344393 2344483 -141441972 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2344513 2344572 -141441883 - L2 LINE L2 -6 3307 3246 213 276 102 20 chr12 2344571 2344669 -141441786 - MER5B DNA MER1_type -72 106 1 * 197 390 90 10 chr12 2345319 2345419 -141441036 + MIR SINE MIR 19 126 -82 1964 144 38 49 chr12 2345498 2345866 -141440589 + MLT1A1 LTR MaLR 1 364 -1 192 293 86 26 chr12 2346146 2346262 -141440193 - MIR SINE MIR -22 240 118 1771 188 93 19 chr12 2346452 2346882 -141439573 + MLT1C LTR MaLR 6 467 0 2077 113 11 3 chr12 2347865 2348183 -141438272 + AluSq SINE Alu 1 320 0 1526 218 61 57 chr12 2348752 2349229 -141437226 + MLT1H LTR MaLR 71 549 0 196 324 108 20 chr12 2349501 2349603 -141436852 + L2 LINE L2 3174 3284 -29 260 309 39 34 chr12 2350452 2350656 -141435799 - L1ME4a LINE L1 -179 5942 5738 198 271 51 0 chr12 2352086 2352145 -141434310 + MIR SINE MIR 26 87 -175 744 288 49 0 chr12 2352217 2352441 -141434014 - MIR SINE MIR -14 248 11 212 288 0 17 chr12 2352431 2352490 -141433965 + MIR SINE MIR 100 157 -105 * 285 311 0 0 chr12 2352636 2352710 -141433745 - L3 LINE CR1 -1 1576 1503 186 286 0 0 chr12 2352708 2352750 -141433705 + L3 LINE CR1 1513 1554 -23 * 319 240 60 0 chr12 2352991 2353091 -141433364 - MER117 DNA MER1_type -91 106 1 326 333 0 23 chr12 2353105 2353237 -141433218 + MER94 DNA DNA 6 134 0 2167 122 3 3 chr12 2353860 2354154 -141432301 - AluSc SINE Alu -15 294 1 414 0 0 0 chr12 2355636 2355682 -141430773 + (CA)n Simple_repeat Simple_repeat 2 47 0 2194 139 79 25 chr12 2356270 2356674 -141429781 + MSTB LTR MaLR 1 426 0 223 69 0 0 chr12 2356716 2356745 -141429710 + MIR SINE MIR 116 144 -64 232 167 24 0 chr12 2357201 2357243 -141429212 + CT-rich Low_complexity Low_complexity 2 44 0 300 359 31 8 chr12 2357742 2357870 -141428585 + L2 LINE L2 3134 3264 -8 375 258 106 23 chr12 2358279 2358411 -141428044 - MER5B DNA MER1_type -35 143 1 519 267 93 17 chr12 2358835 2359007 -141427448 + MIR SINE MIR 7 191 -71 645 216 76 29 chr12 2359161 2359332 -141427123 + MIR SINE MIR 8 186 -76 339 198 9 19 chr12 2359346 2359452 -141427003 + CT-rich Low_complexity Low_complexity 3 107 0 216 329 13 0 chr12 2359654 2359730 -141426725 - L2 LINE L2 -257 3056 2980 510 170 21 0 chr12 2361020 2361114 -141425341 + MER103 DNA DNA 12 107 -59 464 280 38 8 chr12 2361609 2361741 -141424714 - MIR SINE MIR -106 156 21 274 306 207 29 chr12 2361836 2362078 -141424377 - L2 LINE L2 -90 3182 2898 2284 102 3 0 chr12 2362468 2362763 -141423692 + AluSx SINE Alu 1 296 -16 186 216 82 93 chr12 2363327 2363424 -141423031 - MER5A DNA MER1_type -31 158 63 297 128 0 0 chr12 2364950 2364997 -141421458 + (CA)n Simple_repeat Simple_repeat 2 48 0 270 176 0 0 chr12 2365035 2365086 -141421369 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 91 0 0 chr12 2365122 2365155 -141421300 + (CA)n Simple_repeat Simple_repeat 2 34 0 331 290 88 38 chr12 2366414 2366579 -141419876 - MIR3 SINE MIR -29 179 5 1081 182 182 28 chr12 2367065 2367351 -141419104 + L1MDa LINE L1 15 344 -6196 2188 156 8 0 chr12 2367364 2367716 -141418739 - L1MB3 LINE L1 -7 6176 5822 865 204 33 0 chr12 2367717 2367898 -141418557 - L1MDa LINE L1 -6014 526 340 874 119 106 0 chr12 2367903 2368054 -141418401 + L1M2 LINE L1 5318 5484 -696 229 179 0 0 chr12 2368118 2368157 -141418298 + L1M2 LINE L1 5446 5484 -807 7416 200 72 12 chr12 2368461 2370280 -141416175 + L1MDa LINE L1 529 2455 -4085 981 153 49 178 chr12 2370281 2370646 -141415809 + L1MD2 LINE L1 5917 6234 -8 423 258 11 0 chr12 2373187 2373280 -141413175 - MIR SINE MIR -109 153 60 916 203 64 30 chr12 2373981 2374217 -141412238 - MIR SINE MIR -9 253 10 296 235 126 42 chr12 2374241 2374360 -141412095 + MIR SINE MIR 64 192 -70 192 333 167 43 chr12 2375174 2375360 -141411095 - MIR SINE MIR -38 224 16 421 250 151 13 chr12 2375530 2375682 -141410773 + MIR SINE MIR 28 200 -62 2506 211 104 69 chr12 2375978 2376776 -141409679 + LTR1B LTR ERV1 1 826 0 1876 149 0 11 chr12 2380300 2380575 -141405880 + AluSx SINE Alu 35 306 -6 948 119 8 0 chr12 2380621 2380747 -141405708 + AluJb SINE Alu 156 282 -30 213 39 0 0 chr12 2380752 2380778 -141405677 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr12 2381298 2381332 -141405123 + AT_rich Low_complexity Low_complexity 1 34 0 1812 132 40 36 chr12 2381653 2381957 -141404498 - AluJo SINE Alu -3 309 5 380 296 89 7 chr12 2382123 2382258 -141404197 - MIR SINE MIR -44 218 73 283 167 0 0 chr12 2382290 2382332 -141404123 - MIR SINE MIR -162 100 59 931 238 15 0 chr12 2383794 2383996 -141402459 + MER3 DNA MER1_type 5 209 0 223 273 161 12 chr12 2384073 2384234 -141402221 + L2 LINE L2 1700 1884 -1430 499 353 118 22 chr12 2384259 2384886 -141401569 + L2 LINE L2 2004 2690 -624 238 307 188 0 chr12 2385281 2385382 -141401073 + L2 LINE L2 3136 3255 -17 265 231 0 46 chr12 2385449 2385514 -141400941 - MER94 DNA DNA -1 133 72 798 307 112 25 chr12 2386343 2386948 -141399507 + L2 LINE L2 1699 2356 -958 200 306 0 0 chr12 2387021 2387083 -141399372 + L2 LINE L2 2297 2358 -956 1662 145 51 77 chr12 2387315 2387729 -141398726 - L1MA9 LINE L1 0 6312 5910 199 308 132 26 chr12 2387884 2388139 -141398316 + L2 LINE L2 2742 3048 -224 225 0 0 0 chr12 2388223 2388248 -141398207 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 2207 134 0 0 chr12 2388275 2388582 -141397873 - AluSx SINE Alu -5 307 1 193 412 26 0 chr12 2388584 2388698 -141397757 + L2 LINE L2 3119 3235 -37 566 304 45 99 chr12 2388944 2389437 -141397018 - L2 LINE L2 0 3272 2807 293 206 31 72 chr12 2389441 2389538 -141396917 - MER5B DNA MER1_type -2 176 84 1591 191 87 17 chr12 2389558 2389913 -141396542 + MER63 DNA MER1_type 683 1062 0 419 262 19 0 chr12 2389913 2390020 -141396435 + MER5B DNA MER1_type 68 176 -2 212 303 72 80 chr12 2390024 2390288 -141396167 - L2 LINE L2 -514 2800 2539 228 325 60 0 chr12 2390514 2390597 -141395858 + MIR3 SINE MIR 116 203 -5 336 344 48 32 chr12 2391390 2391579 -141394876 + L3b LINE CR1 1110 1301 -282 205 364 61 8 chr12 2391687 2391819 -141394636 + L3b LINE CR1 1441 1579 -4 330 272 136 39 chr12 2392652 2392755 -141393700 - MIR SINE MIR -117 145 33 1572 219 73 20 chr12 2393270 2393723 -141392732 - Charlie4a DNA MER1_type -16 492 16 297 273 23 55 chr12 2394562 2394690 -141391765 - MIR3 SINE MIR -13 195 72 2824 0 0 0 chr12 2395740 2396035 -141390420 - AluYa5 SINE Alu -16 295 1 375 204 34 34 chr12 2396123 2396211 -141390244 + MIR3 SINE MIR 81 168 -40 439 146 11 11 chr12 2396916 2397005 -141389450 + GA-rich Low_complexity Low_complexity 3 91 0 713 229 24 6 chr12 2397106 2397276 -141389179 - MER97b DNA MER1_type? -876 177 5 438 294 32 46 chr12 2397949 2398167 -141388288 + MIR SINE MIR 11 225 -37 237 288 15 0 chr12 2399295 2399361 -141387094 - L2 LINE L2 -20 3252 3186 261 267 105 0 chr12 2399475 2399561 -141386894 - MIR SINE MIR -138 124 30 207 327 18 0 chr12 2399684 2399739 -141386716 - L2 LINE L2 -9 3263 3208 247 291 126 34 chr12 2400247 2400422 -141386033 - MIR3 SINE MIR -9 199 9 292 277 88 36 chr12 2400640 2400777 -141385678 + MIR SINE MIR 44 187 -75 481 248 20 46 chr12 2401692 2401845 -141384610 + MIR3 SINE MIR 49 197 -11 271 284 163 14 chr12 2401903 2402044 -141384411 + L3b LINE CR1 1179 1340 -243 511 270 196 48 chr12 2402058 2402546 -141383909 + L2 LINE L2 2682 3311 -2 194 353 37 37 chr12 2402557 2402693 -141383762 + L3b LINE CR1 1349 1484 -99 22 0 0 0 chr12 2403169 2403191 -141383264 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 2404038 2404060 -141382395 + (A)n Simple_repeat Simple_repeat 1 22 0 918 177 21 52 chr12 2404173 2404365 -141382090 + MER5A DNA MER1_type 4 189 0 1020 287 151 37 chr12 2404573 2405141 -141381314 - L3 LINE CR1 -204 1373 741 798 254 146 36 chr12 2405205 2405787 -141380668 - L1ME4a LINE L1 -209 6306 5661 411 281 112 49 chr12 2405793 2406078 -141380377 - L1ME4a LINE L1 -886 5654 5352 2330 90 0 17 chr12 2406081 2406381 -141380074 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr12 2406747 2406773 -141379682 + AT_rich Low_complexity Low_complexity 1 26 0 701 299 111 28 chr12 2407033 2407684 -141378771 - L1ME4a LINE L1 -1524 5016 4312 24 0 0 0 chr12 2407885 2407909 -141378546 + AT_rich Low_complexity Low_complexity 1 24 0 383 287 52 64 chr12 2408059 2408391 -141378064 - L1MDa LINE L1 -3750 2790 2459 1843 138 48 33 chr12 2408398 2408695 -141377760 + MER1B DNA MER1_type 1 305 -2407 2022 145 119 38 chr12 2408695 2409089 -141377366 + MSTA LTR MaLR 1 426 -2 1843 138 48 33 chr12 2409089 2409125 -141377330 + MER1B DNA MER1_type 305 339 0 28 95 0 0 chr12 2409390 2409474 -141376981 + AT_rich Low_complexity Low_complexity 1 84 0 352 274 84 0 chr12 2409549 2409644 -141376811 - MIR SINE MIR -140 122 20 226 274 98 44 chr12 2409653 2409857 -141376598 - HAL1b LINE L1 -617 731 517 844 339 200 3 chr12 2410140 2410704 -141375751 - L3 LINE CR1 -847 730 56 187 232 54 40 chr12 2413558 2413638 -141372817 + L2 LINE L2 3146 3270 -43 346 386 82 0 chr12 2413676 2413909 -141372546 - MIR SINE MIR -6 256 5 858 221 128 12 chr12 2414027 2414276 -141372179 - MLT1J LTR MaLR -8 503 226 251 281 130 36 chr12 2414296 2414488 -141371967 - MLT1J LTR MaLR -260 251 42 409 296 9 0 chr12 2415039 2415147 -141371308 - MIR3 SINE MIR -13 195 87 197 69 52 35 chr12 2415577 2415635 -141370820 + (GGGTG)n Simple_repeat Simple_repeat 1 59 0 362 277 9 27 chr12 2415649 2415761 -141370694 - MER5A DNA MER1_type -48 141 32 526 272 127 19 chr12 2415901 2416169 -141370286 - L3b LINE CR1 -178 1405 1109 22 0 0 0 chr12 2416225 2416247 -141370208 + AT_rich Low_complexity Low_complexity 1 22 0 227 296 69 15 chr12 2417279 2417380 -141369075 + MIR SINE MIR 57 160 -48 513 0 0 0 chr12 2417476 2417533 -141368922 + (CA)n Simple_repeat Simple_repeat 2 58 0 2365 96 3 0 chr12 2417793 2418096 -141368359 - AluSq SINE Alu -9 304 1 492 240 19 0 chr12 2418849 2418953 -141367502 + MIR SINE MIR 42 147 -115 186 318 35 35 chr12 2419095 2419180 -141367275 - MIR3 SINE MIR -114 94 10 204 245 19 0 chr12 2419697 2419750 -141366705 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 995 191 44 0 chr12 2419894 2420098 -141366357 - MER20 DNA MER1_type -3 216 4 189 294 15 15 chr12 2420178 2420246 -141366209 - L2 LINE L2 -220 3052 2985 202 322 17 17 chr12 2422557 2422672 -141363783 + L2 LINE L2 2992 3106 -166 212 254 34 0 chr12 2422700 2422759 -141363696 + L2 LINE L2 3247 3307 -6 1127 129 5 55 chr12 2424477 2424694 -141361761 + MER20 DNA MER1_type 10 215 -4 358 284 203 31 chr12 2424759 2424981 -141361474 + L3 LINE CR1 1308 1567 -10 592 279 135 5 chr12 2425298 2425513 -141360942 + MIR SINE MIR 20 262 0 191 138 0 0 chr12 2425972 2426001 -141360454 - L2 LINE L2 -33 3239 3211 280 196 0 0 chr12 2426022 2426073 -141360382 - MIR SINE MIR -114 148 98 306 286 48 29 chr12 2426661 2426766 -141359689 + MIR3 SINE MIR 94 200 -8 344 213 0 22 chr12 2429407 2429590 -141356865 + (CA)n Simple_repeat Simple_repeat 2 180 0 626 289 35 20 chr12 2430122 2430319 -141356136 + MIR SINE MIR 14 213 -49 890 150 19 25 chr12 2432187 2432347 -141354108 - MER53 DNA DNA -7 182 24 274 291 38 136 chr12 2432643 2432856 -141353599 + MIR SINE MIR 20 211 -51 216 111 28 0 chr12 2433232 2433268 -141353187 - L2 LINE L2 -23 3249 3213 2515 57 3 3 chr12 2434811 2435109 -141351346 - AluY SINE Alu -13 298 1 300 305 34 17 chr12 2435356 2435531 -141350924 + L1ME4a LINE L1 5445 5602 -519 437 283 157 13 chr12 2435740 2435970 -141350485 + L1ME4a LINE L1 5835 6097 -24 570 191 29 0 chr12 2435973 2436078 -141350377 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3340 134 104 18 chr12 2436075 2436755 -141349700 + Tigger3(Golem) DNA MER2_type 2290 3028 -1 193 286 176 55 chr12 2437947 2438146 -141348309 + MIR SINE MIR 40 262 0 221 83 28 0 chr12 2438758 2438794 -141347661 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 388 305 40 13 chr12 2440979 2441130 -141345325 - MIR SINE MIR -55 207 53 660 232 0 0 chr12 2441136 2441261 -141345194 - FLAM_A SINE Alu -8 125 1 183 218 164 0 chr12 2441455 2441510 -141344945 + L2 LINE L2 3200 3263 -9 225 244 27 20 chr12 2441853 2441940 -141344515 + MIR SINE MIR 94 130 -78 232 367 87 5 chr12 2441987 2442183 -141344272 - L3b LINE CR1 -96 1487 1276 268 304 60 46 chr12 2442458 2442596 -141343859 + MIR SINE MIR 18 160 -48 332 294 152 6 chr12 2442931 2443301 -141343154 - L1ME4a LINE L1 -124 5997 5559 2042 173 49 117 chr12 2443425 2444102 -141342353 - L1MC4 LINE L1 0 8042 7412 1059 255 134 34 chr12 2444104 2444551 -141341904 - L1MC4 LINE L1 -899 7143 6652 21 36 0 0 chr12 2444592 2444620 -141341835 + AT_rich Low_complexity Low_complexity 1 28 0 375 321 12 42 chr12 2444914 2445082 -141341373 - L1ME4a LINE L1 -1127 5019 4857 627 221 15 28 chr12 2445182 2445388 -141341067 + MIR SINE MIR 6 262 0 208 329 26 13 chr12 2445408 2445484 -141340971 - MIR3 SINE MIR -49 159 83 218 310 152 38 chr12 2448205 2448363 -141338092 - MIR3 SINE MIR -15 193 18 532 162 204 26 chr12 2448602 2448793 -141337662 - MLT1J LTR MaLR -58 453 229 190 238 0 24 chr12 2448927 2448969 -141337486 + MIR3 SINE MIR 142 182 -26 368 296 19 56 chr12 2449330 2449492 -141336963 + MER5A DNA MER1_type 3 158 -31 402 281 244 6 chr12 2450114 2450278 -141336177 - MIR SINE MIR -6 256 54 427 222 75 96 chr12 2450693 2450922 -141335533 + MIR SINE MIR 26 245 -17 21 0 0 0 chr12 2452493 2452514 -141333941 + AT_rich Low_complexity Low_complexity 1 21 0 204 274 16 16 chr12 2452648 2452710 -141333745 + GA-rich Low_complexity Low_complexity 4 65 0 397 297 0 25 chr12 2452883 2453040 -141333415 - MIR SINE MIR -6 256 38 258 234 43 64 chr12 2453182 2453276 -141333179 + MIR SINE MIR 90 181 -81 761 242 175 47 chr12 2453959 2454302 -141332153 + L2 LINE L2 2918 3304 -9 348 204 153 10 chr12 2454347 2454445 -141332010 - MIR SINE MIR -63 199 88 215 213 19 28 chr12 2456827 2456935 -141329520 + CT-rich Low_complexity Low_complexity 4 110 0 246 244 0 44 chr12 2456958 2457048 -141329407 + CT-rich Low_complexity Low_complexity 2 87 0 182 284 222 0 chr12 2457192 2457273 -141329182 + L2 LINE L2 3144 3242 -30 3226 196 39 20 chr12 2458118 2458833 -141327622 - L1MB2 LINE L1 -2 6169 5441 194 211 39 39 chr12 2458837 2458889 -141327566 - MIR SINE MIR -30 232 181 655 248 80 36 chr12 2459364 2459605 -141326850 - MIR SINE MIR 0 262 12 1217 235 128 35 chr12 2460877 2461425 -141325030 + L1ME3A LINE L1 5561 6159 -11 972 323 177 21 chr12 2462594 2463352 -141323103 + L3 LINE CR1 471 1346 -231 791 128 0 15 chr12 2463835 2463968 -141322487 - L1MB3 LINE L1 -1 6182 6052 195 42 0 0 chr12 2465408 2465432 -141321023 + (TA)n Simple_repeat Simple_repeat 2 25 0 421 250 225 25 chr12 2465508 2465668 -141320787 + MIR SINE MIR 21 212 -50 215 292 0 0 chr12 2465959 2466007 -141320448 + L2 LINE L2 3141 3188 -84 4740 148 86 13 chr12 2466140 2466269 -141320186 - L1MA9 LINE L1 0 6312 6194 321 26 0 0 chr12 2466269 2466307 -141320148 + (TG)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2466307 2467118 -141319337 - L1MA9 LINE L1 -118 6194 5303 1860 157 61 5 chr12 2467118 2467527 -141318928 + L1MA9 LINE L1 4670 5302 -844 457 217 12 121 chr12 2467715 2467881 -141318574 + MER5A DNA MER1_type 1 148 -41 188 305 0 34 chr12 2468184 2468243 -141318212 + MER5A DNA MER1_type 130 186 -3 494 235 27 54 chr12 2468300 2468449 -141318006 + MIR3 SINE MIR 16 160 -48 318 258 0 21 chr12 2468990 2469083 -141317372 - MER103 DNA DNA -68 98 8 752 256 128 9 chr12 2469671 2469882 -141316573 + MIR SINE MIR 16 251 -11 1694 186 4 0 chr12 2469930 2470205 -141316250 - AluJb SINE Alu -18 294 19 472 298 33 22 chr12 2470379 2470560 -141315895 + MIR3 SINE MIR 20 202 -6 1127 189 102 81 chr12 2472069 2472170 -141314285 + MLT1B LTR MaLR 2 99 -291 804 160 8 0 chr12 2472170 2472301 -141314154 - FLAM_C SINE Alu -1 132 1 1127 189 102 81 chr12 2472301 2472580 -141313875 + MLT1B LTR MaLR 99 390 0 296 118 29 59 chr12 2474180 2474248 -141312207 + MER103 DNA DNA 47 112 -54 1872 147 3 33 chr12 2475145 2475451 -141311004 - AluJb SINE Alu -15 297 1 621 270 113 0 chr12 2475825 2475984 -141310471 - MIR SINE MIR -17 245 69 318 269 38 108 chr12 2476075 2476261 -141310194 + MER5A DNA MER1_type 17 189 0 329 255 38 125 chr12 2476443 2476627 -141309828 + MER5B DNA MER1_type 1 168 -10 184 382 11 0 chr12 2476966 2477055 -141309400 - MIR SINE MIR -74 134 45 2275 108 0 0 chr12 2477188 2477475 -141308980 + AluSc SINE Alu 1 287 -22 278 287 110 7 chr12 2477615 2477751 -141308704 - MIR SINE MIR -112 150 1 194 282 118 0 chr12 2479188 2479273 -141307182 - L2 LINE L2 -744 2570 2476 354 326 92 32 chr12 2479904 2480142 -141306313 + MIR SINE MIR 2 262 0 239 316 164 29 chr12 2480211 2480455 -141306000 - L2 LINE L2 -2 3270 2994 250 309 104 83 chr12 2481376 2481810 -141304645 + L2 LINE L2 2830 3272 0 253 219 134 37 chr12 2481925 2482007 -141304448 - L2 LINE L2 -2 3311 3222 1528 121 36 5 chr12 2482103 2482326 -141304129 + MER30 DNA MER1_type 1 230 0 337 271 0 11 chr12 2482503 2482598 -141303857 - L3b LINE CR1 -194 1389 1296 376 285 32 16 chr12 2483194 2483317 -141303138 - MIR SINE MIR -134 128 4 219 355 48 8 chr12 2483573 2483697 -141302758 + L2 LINE L2 3179 3307 -6 463 311 117 5 chr12 2484593 2484815 -141301640 - MIR SINE MIR 0 262 16 488 328 81 6 chr12 2485728 2485902 -141300553 + MIR3 SINE MIR 18 204 -4 443 239 51 36 chr12 2486103 2486241 -141300214 + L2 LINE L2 3174 3313 0 293 308 10 10 chr12 2487717 2487821 -141298634 - MER5A DNA MER1_type -84 105 2 * 503 314 0 13 chr12 2487821 2487973 -141298482 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2488124 2488222 -141298233 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2489242 2489358 -141297097 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2489975 2490060 -141296395 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2490179 2490344 -141296111 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2490426 2490540 -141295915 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2490941 2491079 -141295376 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2491112 2491187 -141295268 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2493256 2493503 -141292952 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2493976 2494103 -141292352 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2494143 2494481 -141291974 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2494511 2494693 -141291762 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2494728 2494960 -141291495 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2495706 2495777 -141290678 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2496631 2496977 -141289478 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2498525 2498611 -141287844 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2498911 2499008 -141287447 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2499112 2499483 -141286972 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2499505 2499945 -141286510 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2500802 2500884 -141285571 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2501117 2501405 -141285050 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2502540 2502601 -141283854 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2502635 2502816 -141283639 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2502816 2502890 -141283565 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2502890 2503070 -141283385 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2503097 2503409 -141283046 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2503959 2504075 -141282380 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2505677 2506023 -141280432 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2506794 2507100 -141279355 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2510062 2510223 -141276232 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2510250 2510398 -141276057 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2510441 2511809 -141274646 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2511809 2512120 -141274335 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2512120 2513464 -141272991 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2515366 2515428 -141271027 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2515493 2515836 -141270619 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2516483 2516909 -141269546 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2517567 2519130 -141267325 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2519432 2519730 -141266725 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2519964 2520002 -141266453 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2520098 2520166 -141266289 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2520748 2520815 -141265640 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2521445 2521691 -141264764 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2523183 2523351 -141263104 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2523775 2523916 -141262539 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2525285 2525409 -141261046 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2525520 2525545 -141260910 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2525819 2525875 -141260580 - L2 LINE L2 -3 3310 3253 24 0 0 0 chr12 2526297 2526321 -141260134 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2527058 2527281 -141259174 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2527365 2527652 -141258803 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2527662 2527735 -141258720 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2527725 2528205 -141258250 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2528205 2528500 -141257955 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2528500 2529373 -141257082 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2530135 2530240 -141256215 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2530994 2531308 -141255147 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2531539 2531849 -141254606 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2531857 2532252 -141254203 + L1MEd LINE L1 691 1081 -5048 353 284 108 52 chr12 2532340 2532534 -141253921 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2532681 2532764 -141253691 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2532830 2533054 -141253401 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2534011 2534221 -141252234 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2534902 2534970 -141251485 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2535084 2535322 -141251133 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2535736 2535901 -141250554 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2536804 2537123 -141249332 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2537113 2537180 -141249275 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2538880 2539108 -141247347 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2539115 2539546 -141246909 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2539792 2539924 -141246531 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2539978 2540121 -141246334 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2540491 2541023 -141245432 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2542069 2542201 -141244254 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2542488 2542566 -141243889 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2545618 2545649 -141240806 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2546415 2546566 -141239889 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2547470 2547914 -141238541 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2547941 2548008 -141238447 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2548140 2548193 -141238262 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2548484 2548519 -141237936 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2550533 2550673 -141235782 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2551398 2551484 -141234971 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2552470 2552523 -141233932 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2552553 2552725 -141233730 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2554491 2554525 -141231930 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2557446 2557761 -141228694 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2557976 2558019 -141228436 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2558777 2559008 -141227447 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2559389 2559556 -141226899 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2559642 2559808 -141226647 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2560023 2560230 -141226225 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2562035 2562180 -141224275 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2562889 2563077 -141223378 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2563112 2563263 -141223192 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2564135 2564378 -141222077 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2564891 2565194 -141221261 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2565875 2566483 -141219972 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2568093 2568133 -141218322 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2568661 2568864 -141217591 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2570233 2570411 -141216044 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2572404 2573695 -141212760 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2574848 2575146 -141211309 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2575455 2575565 -141210890 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2579017 2579120 -141207335 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2579329 2579449 -141207006 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2580818 2580921 -141205534 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2581006 2581411 -141205044 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2581563 2581812 -141204643 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2584753 2584833 -141201622 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2585091 2585631 -141200824 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2585954 2586019 -141200436 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2587656 2587778 -141198677 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2587838 2587993 -141198462 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2588314 2588524 -141197931 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2588835 2588871 -141197584 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2590321 2590437 -141196018 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2591119 2591581 -141194874 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2591629 2591929 -141194526 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2591938 2592255 -141194200 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2592935 2593065 -141193390 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2593072 2593371 -141193084 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2593429 2593557 -141192898 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2593753 2593990 -141192465 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2594960 2595054 -141191401 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2595057 2595166 -141191289 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2595541 2595656 -141190799 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2596368 2596755 -141189700 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2596984 2597183 -141189272 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2597358 2597772 -141188683 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2601018 2602282 -141184173 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2604144 2604199 -141182256 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2604580 2604602 -141181853 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2604928 2605092 -141181363 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2605104 2605132 -141181323 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2608704 2608974 -141177481 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2609621 2609741 -141176714 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2609831 2609890 -141176565 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2614368 2614441 -141172014 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2615457 2615479 -141170976 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2615501 2615582 -141170873 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2615787 2615821 -141170634 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2616122 2616261 -141170194 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2616343 2616632 -141169823 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2617370 2617393 -141169062 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2619256 2619901 -141166554 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2620497 2620612 -141165843 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2620633 2620853 -141165602 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2621164 2621368 -141165087 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2621644 2621708 -141164747 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2621708 2622018 -141164437 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2622018 2622135 -141164320 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2622403 2622550 -141163905 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2622626 2622772 -141163683 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2623726 2623909 -141162546 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2624499 2624743 -141161712 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2624793 2625451 -141161004 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2625745 2625818 -141160637 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2625818 2626468 -141159987 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2626468 2626612 -141159843 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2627523 2627797 -141158658 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2628550 2628580 -141157875 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2628819 2628878 -141157577 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2628984 2629328 -141157127 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2629337 2629407 -141157048 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2629408 2629589 -141156866 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2629600 2629866 -141156589 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2633755 2633775 -141152680 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2634284 2634432 -141152023 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2634432 2634735 -141151720 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2634735 2634819 -141151636 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2635132 2635303 -141151152 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2636139 2636162 -141150293 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2636162 2636462 -141149993 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2637418 2637526 -141148929 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2637711 2637946 -141148509 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2638220 2638265 -141148190 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2638608 2638723 -141147732 + AluSg/x SINE Alu 186 298 -12 293 239 85 46 chr12 2640208 2640338 -141146117 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2640445 2640508 -141145947 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2641142 2641177 -141145278 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2643526 2643915 -141142540 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2644968 2645038 -141141417 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2645074 2645211 -141141244 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2645675 2646517 -141139938 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2648252 2648686 -141137769 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2648831 2648898 -141137557 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2648879 2649033 -141137422 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2649271 2649292 -141137163 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2649473 2649556 -141136899 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2650068 2650324 -141136131 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2650383 2651400 -141135055 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2651679 2651741 -141134714 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2651744 2651887 -141134568 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2655927 2656096 -141130359 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2657428 2657655 -141128800 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2657836 2657941 -141128514 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2658949 2659237 -141127218 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2659237 2659323 -141127132 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2659407 2659589 -141126866 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2659694 2659798 -141126657 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2660294 2660932 -141125523 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2661153 2661359 -141125096 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2662798 2663131 -141123324 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2664832 2665002 -141121453 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2665145 2665226 -141121229 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2666036 2666110 -141120345 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2666409 2666668 -141119787 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2667992 2668041 -141118414 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2669770 2669960 -141116495 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2671877 2672126 -141114329 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2676356 2676432 -141110023 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2676621 2676759 -141109696 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2676809 2676882 -141109573 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2677584 2677657 -141108798 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2677736 2678507 -141107948 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2678805 2678947 -141107508 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2680771 2680901 -141105554 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2682148 2682236 -141104219 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2682236 2682547 -141103908 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2682547 2682626 -141103829 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2683389 2683472 -141102983 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2685192 2685435 -141101020 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2686063 2686256 -141100199 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2687934 2687970 -141098485 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2690718 2690809 -141095646 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2691013 2691137 -141095318 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2692359 2692458 -141093997 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2693073 2693202 -141093253 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2694561 2695597 -141090858 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2696071 2696214 -141090241 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2696711 2696811 -141089644 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2697829 2697922 -141088533 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2701028 2701063 -141085392 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2702826 2702862 -141083593 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2703304 2703319 -141083136 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2703319 2703358 -141083097 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2704408 2704729 -141081726 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2707334 2707373 -141079082 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2709741 2709910 -141076545 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2710901 2710936 -141075519 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2712097 2712181 -141074274 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2712259 2713426 -141073029 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2713422 2713726 -141072729 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2713991 2714230 -141072225 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2714237 2714914 -141071541 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2714914 2716087 -141070368 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2716087 2716461 -141069994 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2717110 2717402 -141069053 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2717544 2717831 -141068624 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2717831 2717882 -141068573 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2717903 2718261 -141068194 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2718244 2718467 -141067988 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2718453 2718527 -141067928 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2718527 2718838 -141067617 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2718838 2719053 -141067402 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2719061 2719807 -141066648 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2719823 2720114 -141066341 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2720112 2720283 -141066172 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2720302 2720606 -141065849 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2720613 2721206 -141065249 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2722474 2722774 -141063681 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2723464 2723504 -141062951 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2725018 2725425 -141061030 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2725813 2726022 -141060433 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2726279 2726452 -141060003 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2726576 2726745 -141059710 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2726612 2726761 -141059694 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2726853 2726980 -141059475 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2727145 2727445 -141059010 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2727586 2727879 -141058576 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2727892 2728047 -141058408 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2728949 2729378 -141057077 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2729610 2729664 -141056791 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2729694 2729760 -141056695 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2729760 2730051 -141056404 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2730051 2730393 -141056062 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2730849 2730990 -141055465 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2731654 2731888 -141054567 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2732046 2732514 -141053941 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2732571 2732707 -141053748 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2733281 2733556 -141052899 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2734791 2734961 -141051494 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2737860 2737922 -141048533 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2738762 2738885 -141047570 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2738973 2739043 -141047412 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2739417 2740162 -141046293 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2740221 2741549 -141044906 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2741705 2741894 -141044561 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2742105 2742281 -141044174 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2742298 2742344 -141044111 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2742667 2742732 -141043723 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2742892 2743014 -141043441 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2743386 2743604 -141042851 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2743604 2743897 -141042558 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2743897 2744263 -141042192 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2744496 2744553 -141041902 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2745921 2746372 -141040083 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2746432 2746548 -141039907 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2746622 2746866 -141039589 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2746967 2747041 -141039414 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2747730 2747789 -141038666 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2751007 2751307 -141035148 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2751563 2751597 -141034858 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2752567 2752688 -141033767 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2752689 2753175 -141033280 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2753190 2753407 -141033048 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2753795 2754101 -141032354 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2754928 2754958 -141031497 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2761922 2762150 -141024305 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2762281 2762981 -141023474 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2762966 2769111 -141017344 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2769124 2773377 -141013078 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2773372 2773503 -141012952 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2773510 2773634 -141012821 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2774964 2775428 -141011027 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2775006 2775308 -141011147 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2775308 2775450 -141011005 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2776481 2776758 -141009697 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2776776 2776991 -141009464 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2777273 2777422 -141009033 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2777822 2778051 -141008404 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2778276 2778308 -141008147 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2778323 2778373 -141008082 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2778373 2778675 -141007780 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2778675 2778981 -141007474 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2778981 2779049 -141007406 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2779050 2779845 -141006610 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2779845 2780140 -141006315 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2780140 2780634 -141005821 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2780634 2780804 -141005651 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2780804 2781313 -141005142 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2781313 2782023 -141004432 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2782023 2782040 -141004415 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2782070 2783255 -141003200 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2783255 2783435 -141003020 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2783435 2783453 -141003002 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2783453 2783901 -141002554 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2783914 2783982 -141002473 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2784598 2784741 -141001714 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2985567 2985856 -140800599 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2985864 2985958 -140800497 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2986134 2986341 -140800114 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2986361 2986630 -140799825 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2986630 2986653 -140799802 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2986791 2986955 -140799500 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2987372 2987489 -140798966 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2987526 2987815 -140798640 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2987823 2987945 -140798510 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2987946 2988081 -140798374 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2988082 2988175 -140798280 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2988177 2988383 -140798072 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2988383 2988529 -140797926 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2989062 2989248 -140797207 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2989248 2989807 -140796648 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2989809 2990018 -140796437 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2990260 2990544 -140795911 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2991343 2991468 -140794987 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2991684 2992186 -140794269 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2992777 2992800 -140793655 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2992838 2993138 -140793317 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2993438 2993532 -140792923 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2993476 2993556 -140792899 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2993632 2993920 -140792535 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2994221 2994281 -140792174 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2994281 2994308 -140792147 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2994308 2994370 -140792085 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2994370 2994684 -140791771 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2994684 2995488 -140790967 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2995655 2995752 -140790703 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2996613 2996738 -140789717 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2997291 2997583 -140788872 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 2997649 2997696 -140788759 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 2997696 2997993 -140788462 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 2997993 2998123 -140788332 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 2998297 2998608 -140787847 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 2999533 2999740 -140786715 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3000306 3000478 -140785977 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3000478 3000563 -140785892 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3000601 3000677 -140785778 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3001432 3001455 -140785000 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3001919 3001971 -140784484 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3002178 3002264 -140784191 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3002501 3002550 -140783905 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3003428 3003518 -140782937 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3005469 3005617 -140780838 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3006130 3006258 -140780197 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3008248 3008406 -140778049 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3008576 3008761 -140777694 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3008774 3009074 -140777381 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3009096 3009305 -140777150 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3009366 3009668 -140776787 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3011463 3011565 -140774890 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3011683 3011837 -140774618 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3011882 3011974 -140774481 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3012338 3012575 -140773880 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3013066 3013080 -140773375 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3013080 3013382 -140773073 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3013382 3013396 -140773059 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3013396 3013427 -140773028 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3013427 3013576 -140772879 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3013576 3013875 -140772580 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3014063 3014178 -140772277 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3014684 3014998 -140771457 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3015468 3015738 -140770717 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3015738 3016043 -140770412 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3016296 3016605 -140769850 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3016622 3016925 -140769530 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3017368 3017525 -140768930 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3017527 3017668 -140768787 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3017668 3017961 -140768494 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3017961 3017984 -140768471 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3017984 3018165 -140768290 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3018733 3018970 -140767485 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3019682 3019886 -140766569 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3019886 3019927 -140766528 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3019938 3020012 -140766443 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3020038 3020156 -140766299 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3020585 3020885 -140765570 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3021047 3021188 -140765267 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3021188 3021501 -140764954 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3021501 3021541 -140764914 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3021617 3021783 -140764672 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3022504 3022672 -140763783 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3022672 3022971 -140763484 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3022971 3023269 -140763186 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3023269 3023586 -140762869 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3023586 3023732 -140762723 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3025012 3025127 -140761328 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3025137 3025324 -140761131 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3025376 3025672 -140760783 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3025676 3025823 -140760632 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3025823 3026122 -140760333 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3026122 3026280 -140760175 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3026284 3026395 -140760060 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3027258 3027297 -140759158 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3028558 3028862 -140757593 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3029169 3029308 -140757147 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3031617 3031837 -140754618 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3032404 3032704 -140753751 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3034878 3034944 -140751511 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3035198 3035499 -140750956 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3035565 3035702 -140750753 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3036130 3036423 -140750032 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3036440 3036725 -140749730 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3036798 3036924 -140749531 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3037942 3038249 -140748206 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3038369 3038403 -140748052 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3038403 3038536 -140747919 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3038536 3038553 -140747902 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3038696 3038836 -140747619 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3039191 3039423 -140747032 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3040373 3040586 -140745869 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3041797 3041832 -140744623 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3041832 3041861 -140744594 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3042518 3042926 -140743529 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3043222 3043679 -140742776 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3043696 3043836 -140742619 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3043836 3044128 -140742327 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3044128 3044311 -140742144 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3044315 3044482 -140741973 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3045650 3045940 -140740515 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3046204 3046388 -140740067 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3046388 3046760 -140739695 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3046761 3046807 -140739648 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3046807 3047110 -140739345 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3047110 3047161 -140739294 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3047161 3047443 -140739012 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3047443 3047485 -140738970 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3048184 3048360 -140738095 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3048360 3048657 -140737798 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3048657 3048754 -140737701 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3048754 3049061 -140737394 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3049061 3049100 -140737355 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3049100 3049391 -140737064 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3049391 3049438 -140737017 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3049442 3049675 -140736780 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3050042 3050099 -140736356 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3050171 3050464 -140735991 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3050465 3050592 -140735863 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3050618 3050912 -140735543 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3050912 3051204 -140735251 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3052509 3052639 -140733816 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3053145 3053266 -140733189 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3053525 3053824 -140732631 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3053838 3054017 -140732438 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3054017 3054321 -140732134 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3054321 3054560 -140731895 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3054601 3054807 -140731648 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3055503 3055553 -140730902 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3056695 3056834 -140729621 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3056834 3057136 -140729319 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3057136 3057172 -140729283 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3057294 3057612 -140728843 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3057619 3057643 -140728812 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3057658 3057815 -140728640 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3057830 3057878 -140728577 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3057878 3057915 -140728540 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3057915 3057984 -140728471 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3057984 3058283 -140728172 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3058289 3058331 -140728124 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3058338 3058619 -140727836 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3058619 3058778 -140727677 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3058845 3058929 -140727526 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3058997 3059010 -140727445 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3059010 3059305 -140727150 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3059305 3059363 -140727092 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3059363 3059666 -140726789 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3059666 3059749 -140726706 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3059916 3060213 -140726242 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3060218 3060263 -140726192 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3060671 3060965 -140725490 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3060980 3061098 -140725357 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3061250 3061343 -140725112 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3062724 3062915 -140723540 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3063011 3063303 -140723152 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3066510 3066589 -140719866 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3066589 3066671 -140719784 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3066671 3066873 -140719582 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3066879 3067152 -140719303 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3067232 3067519 -140718936 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3067527 3067823 -140718632 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3067844 3067972 -140718483 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3067972 3068069 -140718386 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3068069 3068539 -140717916 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3068539 3068839 -140717616 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3068839 3068876 -140717579 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3069158 3069182 -140717273 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3069182 3069482 -140716973 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3069482 3069509 -140716946 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3069701 3069917 -140716538 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3070030 3070335 -140716120 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3070345 3070645 -140715810 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3072284 3072592 -140713863 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3072618 3072754 -140713701 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3072636 3072785 -140713670 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3073511 3073811 -140712644 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3073823 3074102 -140712353 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3074151 3074316 -140712139 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3074334 3074644 -140711811 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3075529 3075586 -140710869 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3075743 3075793 -140710662 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3075911 3076077 -140710378 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3076077 3076376 -140710079 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3076376 3076527 -140709928 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3076536 3076625 -140709830 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3076626 3076916 -140709539 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3076940 3077023 -140709432 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3077023 3077317 -140709138 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3077319 3077623 -140708832 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3077623 3077862 -140708593 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3078006 3078304 -140708151 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3078458 3078611 -140707844 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3078968 3079269 -140707186 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3079495 3079704 -140706751 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3079756 3080068 -140706387 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3080072 3080186 -140706269 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3080210 3080518 -140705937 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3081623 3081933 -140704522 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3082082 3082151 -140704304 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3082392 3082644 -140703811 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3132644 3132916 -140653539 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3133856 3133913 -140652542 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3134593 3134745 -140651710 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3134754 3135040 -140651415 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3135193 3135791 -140650664 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3135844 3136159 -140650296 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3136183 3136489 -140649966 - AluJb SINE Alu -8 304 1 312 321 98 10 chr12 3136489 3136682 -140649773 - L2 LINE L2 -964 2350 2141 * 385 274 120 101 chr12 3136661 3136889 -140649566 - L2 LINE L2 -1737 1577 1355 1498 163 71 27 chr12 3136889 3137184 -140649271 + AluJo SINE Alu 1 308 -4 2101 95 14 3 chr12 3137190 3137486 -140648969 + AluSx SINE Alu 1 299 -13 1711 166 7 17 chr12 3137493 3137794 -140648661 - AluJo SINE Alu -14 298 1 385 274 120 101 chr12 3137794 3137908 -140648547 - L2 LINE L2 -1968 1346 1213 2078 120 0 0 chr12 3137957 3138258 -140648197 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3138269 3138405 -140648050 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3138480 3138784 -140647671 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3138934 3139008 -140647447 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3139015 3139134 -140647321 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3139134 3139172 -140647283 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3139272 3139582 -140646873 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3139609 3139655 -140646800 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3139658 3139941 -140646514 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3139956 3140252 -140646203 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3140332 3140368 -140646087 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3140368 3140671 -140645784 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3140677 3140824 -140645631 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3140906 3140933 -140645522 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3140935 3141088 -140645367 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3141088 3141108 -140645347 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3141108 3141382 -140645073 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3141382 3141518 -140644937 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3141564 3141980 -140644475 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3142418 3142730 -140643725 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3143224 3143539 -140642916 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3143722 3143773 -140642682 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3143805 3143898 -140642557 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3143916 3144051 -140642404 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3144051 3144356 -140642099 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3144356 3144519 -140641936 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3144559 3144617 -140641838 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3145384 3145655 -140640800 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3146412 3146528 -140639927 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3146818 3147093 -140639362 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3148626 3148750 -140637705 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3148750 3148770 -140637685 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3148770 3148948 -140637507 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3149364 3149665 -140636790 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3149712 3150018 -140636437 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3150183 3150466 -140635989 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3150664 3150799 -140635656 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3151087 3151394 -140635061 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3151394 3151433 -140635022 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3151469 3151775 -140634680 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3152548 3152799 -140633656 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3152799 3153095 -140633360 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3153095 3153173 -140633282 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3153549 3153604 -140632851 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3153651 3153795 -140632660 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3153877 3154165 -140632290 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3154340 3154461 -140631994 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3154483 3154611 -140631844 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3154611 3154647 -140631808 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3154652 3154954 -140631501 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3154973 3155087 -140631368 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3155186 3155319 -140631136 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3155326 3155498 -140630957 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3155557 3155832 -140630623 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3155833 3155919 -140630536 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3155919 3156220 -140630235 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3156220 3156306 -140630149 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3156467 3156778 -140629677 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3156791 3157096 -140629359 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3157577 3157862 -140628593 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3157865 3157956 -140628499 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3157982 3158147 -140628308 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3158148 3158168 -140628287 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3158168 3158218 -140628237 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3158229 3158538 -140627917 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3158538 3158724 -140627731 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3159720 3160015 -140626440 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3160117 3160136 -140626319 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3160136 3160447 -140626008 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3160447 3160627 -140625828 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3160627 3160937 -140625518 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3160937 3161074 -140625381 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3161210 3161357 -140625098 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3161673 3161953 -140624502 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3162043 3162339 -140624116 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3162383 3162407 -140624048 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3162806 3162888 -140623567 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3162888 3163180 -140623275 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3163180 3163484 -140622971 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3163484 3163509 -140622946 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3163511 3163810 -140622645 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3163911 3164046 -140622409 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3164046 3164354 -140622101 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3164354 3164517 -140621938 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3165281 3165577 -140620878 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3165865 3165886 -140620569 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3165963 3166109 -140620346 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3166866 3167146 -140619309 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3167196 3167327 -140619128 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3168212 3168520 -140617935 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3168520 3168563 -140617892 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3168630 3168651 -140617804 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3168702 3168833 -140617622 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3168962 3169117 -140617338 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3169822 3169918 -140616537 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3169927 3170055 -140616400 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3170057 3170093 -140616362 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3170099 3170419 -140616036 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3170419 3170454 -140616001 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3170454 3170764 -140615691 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3170764 3170783 -140615672 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3170783 3170978 -140615477 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3170978 3171279 -140615176 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3171279 3171359 -140615096 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3171359 3171438 -140615017 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3171494 3171787 -140614668 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3171838 3172145 -140614310 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3172388 3172699 -140613756 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3172874 3173152 -140613303 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3174110 3174340 -140612115 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3174451 3174747 -140611708 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3174764 3174952 -140611503 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3174967 3175267 -140611188 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3175403 3175695 -140610760 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3175745 3176047 -140610408 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3177083 3177382 -140609073 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3177458 3177535 -140608920 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3177995 3178295 -140608160 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3178657 3178950 -140607505 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3179711 3180014 -140606441 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3180018 3180079 -140606376 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3180081 3180136 -140606319 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3180228 3180534 -140605921 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3180547 3180850 -140605605 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3180866 3181251 -140605204 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3181251 3181559 -140604896 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3181566 3181727 -140604728 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3181727 3181751 -140604704 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3181751 3182038 -140604417 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3182038 3182176 -140604279 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3182376 3182434 -140604021 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3183074 3183346 -140603109 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3183405 3183475 -140602980 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3183475 3183782 -140602673 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3183782 3184214 -140602241 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3184222 3184508 -140601947 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3185104 3185416 -140601039 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3185467 3185511 -140600944 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3185516 3185806 -140600649 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3185821 3185878 -140600577 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3185910 3185936 -140600519 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3185936 3186183 -140600272 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3186183 3186234 -140600221 - AluJo SINE Alu -30 272 2 734 231 125 19 chr12 3186234 3186442 -140600013 - AluJo SINE Alu -81 231 2 2304 94 17 0 chr12 3186447 3186744 -140599711 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3186753 3186973 -140599482 - L1MB4 LINE L1 -29 6151 5927 2504 87 0 0 chr12 3187267 3187578 -140598877 - AluY SINE Alu 0 311 1 583 311 51 8 chr12 3188657 3188892 -140597563 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3189152 3189455 -140597000 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3189561 3189670 -140596785 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3189788 3190096 -140596359 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3190496 3190524 -140595931 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3190524 3190823 -140595632 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3190827 3191137 -140595318 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3191509 3191849 -140594606 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3192297 3192374 -140594081 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3192546 3192838 -140593617 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3192840 3193143 -140593312 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3193324 3193616 -140592839 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3193681 3193976 -140592479 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3194059 3194371 -140592084 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3195369 3195652 -140590803 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3195827 3196108 -140590347 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3198070 3198370 -140588085 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3198695 3198966 -140587489 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3198966 3199139 -140587316 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3199151 3199437 -140587018 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3199481 3199759 -140586696 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3199974 3200278 -140586177 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3200604 3200915 -140585540 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3201840 3202123 -140584332 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3202211 3202521 -140583934 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3202567 3202837 -140583618 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3203384 3203690 -140582765 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3203831 3204125 -140582330 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3204261 3204571 -140581884 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3204619 3204773 -140581682 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3204798 3204840 -140581615 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3204840 3205190 -140581265 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3205190 3205424 -140581031 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3205467 3205766 -140580689 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3205824 3206131 -140580324 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3206137 3206297 -140580158 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3206459 3206579 -140579876 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3206579 3206890 -140579565 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3206891 3207052 -140579403 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3207577 3207932 -140578523 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3207978 3208282 -140578173 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3208367 3208395 -140578060 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3208419 3208529 -140577926 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3208529 3208661 -140577794 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3208661 3208951 -140577504 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3208953 3209263 -140577192 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3209372 3209505 -140576950 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3209507 3209528 -140576927 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3209645 3209953 -140576502 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3210236 3210305 -140576150 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3210305 3210385 -140576070 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3210379 3210486 -140575969 - AluSq/x SINE Alu -202 110 2 2375 72 3 3 chr12 3210490 3210781 -140575674 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3210781 3211078 -140575377 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3211078 3211100 -140575355 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3211101 3211194 -140575261 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3211336 3211642 -140574813 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3211649 3211825 -140574630 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3211925 3212236 -140574219 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3212237 3212535 -140573920 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3212590 3212906 -140573549 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3213524 3213830 -140572625 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3214078 3214307 -140572148 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3214462 3214486 -140571969 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3214487 3214723 -140571732 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3214805 3215034 -140571421 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3215200 3215238 -140571217 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3215423 3215492 -140570963 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3216094 3216142 -140570313 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3216343 3216403 -140570052 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3218372 3218450 -140568005 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3218712 3218763 -140567692 - L2 LINE L2 -5 3267 3217 438 228 0 63 chr12 3218933 3218947 -140567508 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3218947 3219119 -140567336 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3219119 3219203 -140567252 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3219203 3219490 -140566965 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3219490 3219621 -140566834 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3219621 3219732 -140566723 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3221303 3221629 -140564826 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3222008 3222315 -140564140 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3222416 3222699 -140563756 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3222699 3222733 -140563722 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3222736 3222867 -140563588 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3223004 3223195 -140563260 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3223259 3223565 -140562890 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3223568 3223862 -140562593 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3223886 3223976 -140562479 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3223990 3224361 -140562094 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3224370 3224502 -140561953 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3224520 3224616 -140561839 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3224939 3225241 -140561214 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3225241 3225495 -140560960 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3225495 3225520 -140560935 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3225523 3225811 -140560644 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3225973 3226303 -140560152 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3226326 3226421 -140560034 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3226419 3226469 -140559986 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3226800 3226935 -140559520 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3226938 3227150 -140559305 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3227152 3227347 -140559108 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3227918 3228003 -140558452 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3228287 3228630 -140557825 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3228656 3228957 -140557498 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3228957 3229237 -140557218 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3229347 3229653 -140556802 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3229699 3229989 -140556466 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3229992 3230217 -140556238 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3230220 3230294 -140556161 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3230856 3231158 -140555297 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3231917 3231947 -140554508 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3232039 3232212 -140554243 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3232212 3232543 -140553912 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3232543 3232864 -140553591 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3232864 3233167 -140553288 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3233167 3233205 -140553250 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3233217 3233348 -140553107 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3233925 3234132 -140552323 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3234142 3234216 -140552239 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3234387 3234585 -140551870 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3235066 3235232 -140551223 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3235232 3235558 -140550897 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3235558 3235769 -140550686 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3235769 3236071 -140550384 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3236071 3236177 -140550278 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3236197 3236536 -140549919 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3236571 3236703 -140549752 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3236708 3236755 -140549700 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3236944 3237034 -140549421 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3237306 3237605 -140548850 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3237635 3237716 -140548739 + AluS SINE Alu 2 85 -228 340 339 62 0 chr12 3237788 3237965 -140548490 + MIR SINE MIR 57 244 -18 192 248 0 119 chr12 3238394 3238503 -140547952 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3240012 3240047 -140546408 + AT_rich Low_complexity Low_complexity 1 35 0 430 311 43 24 chr12 3240300 3240464 -140545991 - MIR3 SINE MIR -8 200 34 370 285 182 31 chr12 3240641 3240960 -140545495 - L2 LINE L2 -7 3265 2899 200 360 182 11 chr12 3241105 3241369 -140545086 - L2 LINE L2 -542 2772 2464 3225 113 26 85 chr12 3241371 3241973 -140544482 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2414 78 0 3 chr12 3241973 3242267 -140544188 + AluY SINE Alu 16 308 -3 3225 113 26 85 chr12 3242267 3242309 -140544146 - Tigger3(Golem) DNA MER2_type -563 2466 2423 1312 85 0 0 chr12 3242442 3242651 -140543804 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3242771 3243073 -140543382 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3243076 3243387 -140543068 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3243387 3243700 -140542755 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3243700 3243760 -140542695 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3243894 3244314 -140542141 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3247179 3247237 -140539218 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3247461 3247763 -140538692 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3248118 3248431 -140538024 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3248459 3249457 -140536998 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3249903 3249985 -140536470 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3249987 3250016 -140536439 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3250151 3250439 -140536016 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3251601 3251714 -140534741 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3251898 3251964 -140534491 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3252202 3252516 -140533939 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3252539 3253307 -140533148 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3253307 3253610 -140532845 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3253610 3254125 -140532330 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3254475 3254921 -140531534 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3255585 3255879 -140530576 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3255902 3256204 -140530251 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3256208 3256309 -140530146 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3256385 3256504 -140529951 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3256884 3256952 -140529503 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3257253 3257777 -140528678 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3257808 3258121 -140528334 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3258123 3258348 -140528107 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3259205 3259365 -140527090 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3259964 3260271 -140526184 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3261728 3262417 -140524038 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3262417 3262712 -140523743 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3262712 3263003 -140523452 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3263015 3263314 -140523141 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3263315 3263852 -140522603 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3264085 3264172 -140522283 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3264486 3264576 -140521879 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3264835 3265073 -140521382 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3265104 3265410 -140521045 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3265434 3265502 -140520953 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3265544 3265676 -140520779 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3265676 3265973 -140520482 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3265973 3266164 -140520291 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3266164 3266483 -140519972 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3266483 3266521 -140519934 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3266548 3266872 -140519583 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3267506 3267588 -140518867 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3267588 3267910 -140518545 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3267910 3267969 -140518486 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3268066 3268359 -140518096 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3268405 3268964 -140517491 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3268964 3269316 -140517139 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3269316 3269467 -140516988 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3269724 3269986 -140516469 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3270196 3270401 -140516054 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3271504 3271685 -140514770 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3271761 3272071 -140514384 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3272805 3272921 -140513534 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3273388 3273546 -140512909 + MIR3 SINE MIR 21 184 -24 322 274 85 13 chr12 3274465 3274618 -140511837 + MIR3 SINE MIR 23 186 -22 324 294 122 50 chr12 3274624 3274758 -140511697 - MIR SINE MIR -2 260 137 361 259 140 84 chr12 3274758 3274861 -140511594 + MER102b DNA MER1_type 3 99 -1329 1976 156 0 44 chr12 3274861 3275176 -140511279 - AluJb SINE Alu -11 301 1 361 259 140 84 chr12 3275176 3275393 -140511062 + MER102b DNA MER1_type 99 341 0 324 294 122 50 chr12 3275393 3275496 -140510959 - MIR SINE MIR -125 137 6 2332 47 54 0 chr12 3275553 3275830 -140510625 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3275831 3276056 -140510399 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3277138 3277309 -140509146 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3277842 3277930 -140508525 + L1ME4a LINE L1 5698 5784 -337 1975 93 86 11 chr12 3277930 3278208 -140508247 - AluSp SINE Alu -14 299 1 425 272 44 34 chr12 3278208 3278274 -140508181 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3278274 3278582 -140507873 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3278582 3278632 -140507823 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3278650 3278767 -140507688 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3278987 3279010 -140507445 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3279532 3279705 -140506750 + MIR SINE MIR 11 213 -49 1358 157 26 0 chr12 3279725 3279955 -140506500 - Tigger3b DNA MER2_type 0 1241 1006 252 151 0 19 chr12 3280011 3280054 -140506401 - Tigger3b DNA MER2_type -255 976 935 667 106 0 53 chr12 3280054 3280125 -140506330 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3280125 3280410 -140506045 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3280410 3280451 -140506004 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3280461 3280553 -140505902 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3280586 3280615 -140505840 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3280617 3280732 -140505723 + FLAM_C SINE Alu 1 120 -23 1270 119 50 54 chr12 3280732 3280858 -140505597 - Tigger3b DNA MER2_type -2565 463 338 2487 71 0 0 chr12 3280858 3281153 -140505302 - AluY SINE Alu -16 295 1 1270 119 50 54 chr12 3281153 3281287 -140505168 - Tigger3b DNA MER2_type -2690 338 204 592 149 0 47 chr12 3281297 3281404 -140505051 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3281430 3281629 -140504826 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3281943 3282056 -140504399 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3282259 3282705 -140503750 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3282971 3283217 -140503238 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3284097 3284281 -140502174 + MIR SINE MIR 73 259 -3 287 287 167 6 chr12 3284641 3284815 -140501640 - MIR SINE MIR -6 256 55 421 309 60 20 chr12 3284902 3285103 -140501352 + MIR SINE MIR 53 261 -1 3799 174 30 14 chr12 3285267 3286030 -140500425 - L1MB5 LINE L1 -9 6165 5391 22 0 0 0 chr12 3286874 3286896 -140499559 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 141 67 chr12 3287368 3287503 -140498952 + MIR SINE MIR 38 182 -80 434 276 115 29 chr12 3287840 3288014 -140498441 - MIR3 SINE MIR 0 208 20 1748 156 0 11 chr12 3288601 3288884 -140497571 - AluJo SINE Alu -32 280 1 218 179 0 54 chr12 3289757 3289813 -140496642 - MIR SINE MIR -182 80 28 307 291 29 10 chr12 3289900 3290003 -140496452 - MIR SINE MIR -55 207 103 217 250 36 12 chr12 3291473 3291557 -140494898 + MIR SINE MIR 39 124 -84 1241 145 24 121 chr12 3291960 3292257 -140494198 - AluJb SINE Alu -10 302 35 1698 145 81 7 chr12 3293062 3293345 -140493110 - AluJb SINE Alu -8 304 1 203 306 194 32 chr12 3293621 3293745 -140492710 + MER5C DNA MER1_type 4 147 -177 405 258 172 8 chr12 3295509 3295637 -140490818 - MIR SINE MIR -33 229 81 3241 196 33 130 chr12 3296263 3297579 -140488876 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3297580 3297612 -140488843 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2004 116 14 0 chr12 3297615 3297899 -140488556 - AluSx SINE Alu -24 288 1 683 272 91 25 chr12 3297924 3298167 -140488288 + MLT1C LTR MaLR 200 458 -9 272 217 0 12 chr12 3299247 3299330 -140487125 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3299352 3299502 -140486953 + G-rich Low_complexity Low_complexity 1 150 0 2260 79 3 10 chr12 3299595 3299912 -140486543 + AluSx SINE Alu 1 315 0 290 211 53 0 chr12 3299919 3300014 -140486441 - L1M4 LINE L1 -1554 4592 4493 2923 198 43 23 chr12 3300016 3300042 -140486413 + MER21B LTR ERV1 1 25 -838 2186 70 37 20 chr12 3300042 3300340 -140486115 + AluSq SINE Alu 1 303 -10 2923 198 43 23 chr12 3300340 3300971 -140485484 + MER21B LTR ERV1 25 671 -192 491 158 0 24 chr12 3300971 3301053 -140485402 - AluJ/FLAM SINE Alu -232 80 1 539 270 86 67 chr12 3301083 3301247 -140485208 - L1MEd LINE L1 -4715 1595 1436 2007 134 0 3 chr12 3301247 3301546 -140484909 - AluSx SINE Alu -9 303 6 539 270 86 67 chr12 3301546 3302098 -140484357 - L1MEd LINE L1 -4874 1436 826 410 366 114 25 chr12 3302102 3302271 -140484184 - L1MEd LINE L1 -5526 593 440 2104 121 16 0 chr12 3302271 3302577 -140483878 - AluSx SINE Alu -1 311 1 410 366 114 25 chr12 3302577 3302724 -140483731 - L1MEd LINE L1 -5679 440 249 1461 164 53 49 chr12 3302729 3303033 -140483422 + AluJo SINE Alu 1 305 -7 332 272 0 25 chr12 3303082 3303163 -140483292 - L1MEd LINE L1 -6037 82 4 2042 151 0 0 chr12 3303191 3303490 -140482965 + AluSx SINE Alu 1 299 -13 269 328 17 17 chr12 3303670 3303786 -140482669 + MIR SINE MIR 37 152 -56 2342 77 0 0 chr12 3303827 3304126 -140482329 - AluSx SINE Alu -13 299 1 1005 227 36 0 chr12 3304908 3305155 -140481300 - L1MB2 LINE L1 -2 6169 5914 557 126 0 23 chr12 3305171 3305258 -140481197 - AluJ/FLAM SINE Alu -227 85 1 1895 155 0 22 chr12 3305268 3305585 -140480870 - AluJb SINE Alu -2 310 1 1516 189 47 6 chr12 3305586 3305908 -140480547 - L1MB2 LINE L1 -222 5949 5611 2097 87 0 4 chr12 3305908 3306183 -140480272 - AluSx SINE Alu -38 274 1 1516 189 47 6 chr12 3306183 3306199 -140480256 - L1MB2 LINE L1 -560 5611 5597 208 366 12 0 chr12 3306320 3306402 -140480053 - MIR3 SINE MIR -41 167 85 224 241 52 0 chr12 3307176 3307234 -140479221 - L2 LINE L2 0 3272 3212 1704 169 0 22 chr12 3307528 3307847 -140478608 + AluJo SINE Alu 1 312 0 1091 134 0 12 chr12 3308188 3308203 -140478252 - AluSg/x SINE Alu -14 298 284 2192 106 3 6 chr12 3308203 3308515 -140477940 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3308515 3308540 -140477915 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1091 134 0 12 chr12 3308540 3308694 -140477761 - AluSg/x SINE Alu -26 286 130 768 237 72 47 chr12 3308758 3309037 -140477418 - MLT1J LTR MaLR 0 511 226 2252 164 29 40 chr12 3309627 3310072 -140476383 - L1MB3 LINE L1 -10 6173 5734 316 352 36 0 chr12 3310438 3310613 -140475842 - MIR3 SINE MIR -62 146 12 2396 162 52 0 chr12 3312058 3312465 -140473990 - MSTC LTR MaLR 0 428 1 234 208 16 70 chr12 3312587 3312679 -140473776 - MIR SINE MIR -95 113 32 460 185 56 9 chr12 3312893 3313001 -140473454 + MIR SINE MIR 52 164 -98 3903 146 27 52 chr12 3313027 3313295 -140473160 - L1MB4 LINE L1 -2 6178 5905 2238 83 0 23 chr12 3313295 3313596 -140472859 + AluSg SINE Alu 1 294 -16 3903 146 27 52 chr12 3313596 3313625 -140472830 - L1MB4 LINE L1 -275 5905 5877 1952 102 21 25 chr12 3313625 3313910 -140472545 + AluSx SINE Alu 12 295 -17 3903 146 27 52 chr12 3313910 3314439 -140472016 - L1MB4 LINE L1 -303 5877 5372 193 370 33 0 chr12 3314486 3314578 -140471877 - L2 LINE L2 -55 3217 3123 280 274 113 28 chr12 3316156 3316262 -140470193 + MIR3 SINE MIR 72 186 -22 516 293 116 0 chr12 3316325 3316489 -140469966 + MIR SINE MIR 26 208 -54 1810 162 21 60 chr12 3316872 3317091 -140469364 + L1MA7 LINE L1 5844 6039 -252 1595 158 3 100 chr12 3317091 3317290 -140469165 - AluJo SINE Alu -4 308 154 2329 87 0 10 chr12 3317290 3317602 -140468853 - AluY SINE Alu 0 311 3 1595 158 3 100 chr12 3317602 3317743 -140468712 - AluJo SINE Alu -158 154 1 1810 162 21 60 chr12 3317743 3317955 -140468500 + L1MA7 LINE L1 6039 6258 -33 1342 167 21 17 chr12 3317955 3318188 -140468267 + MER46A DNA MER2_type 1 234 -2 2151 99 36 0 chr12 3318217 3318519 -140467936 + AluSp SINE Alu 1 313 0 2090 113 10 7 chr12 3318549 3318851 -140467604 + AluSx SINE Alu 1 303 -9 480 193 0 0 chr12 3319296 3319384 -140467071 + MER69A DNA AcHobo 3 90 -87 594 237 0 7 chr12 3319385 3319520 -140466935 - L1MA10 LINE L1 -12 6322 6189 316 232 50 10 chr12 3319521 3319620 -140466835 + MER69A DNA AcHobo 75 177 0 941 266 147 38 chr12 3319783 3320523 -140465932 - L2 LINE L2 -2 3311 2481 232 367 22 43 chr12 3320516 3320655 -140465800 - L2 LINE L2 -51 3221 3086 * 2323 89 0 9 chr12 3320951 3321266 -140465189 + AluSx SINE Alu 1 312 0 184 276 47 79 chr12 3321266 3321393 -140465062 - MIR3 SINE MIR -77 131 9 2172 117 0 3 chr12 3323030 3323337 -140463118 - AluSq SINE Alu -7 306 1 2262 113 0 0 chr12 3323469 3323771 -140462684 - AluSx SINE Alu -10 302 1 1464 203 10 7 chr12 3324756 3325057 -140461398 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3325064 3325085 -140461370 + AT_rich Low_complexity Low_complexity 1 21 0 2182 88 18 0 chr12 3325262 3325546 -140460909 + AluSx SINE Alu 1 289 -23 624 161 194 0 chr12 3325567 3325691 -140460764 + FAM SINE Alu 16 163 -22 246 347 13 0 chr12 3325693 3325768 -140460687 + MIR3 SINE MIR 126 201 -7 450 254 51 14 chr12 3326365 3326503 -140459952 + MIR3 SINE MIR 37 179 -29 829 146 36 0 chr12 3327461 3327598 -140458857 - AluJb SINE Alu -7 305 164 587 179 60 0 chr12 3327706 3327823 -140458632 + AluJo SINE Alu 5 128 -174 1723 189 0 0 chr12 3327837 3328133 -140458322 - AluJb SINE Alu -16 296 1 1005 190 18 0 chr12 3328264 3328427 -140458028 + AluJo SINE Alu 137 302 0 207 359 13 0 chr12 3328835 3328913 -140457542 - L2 LINE L2 -8 3264 3186 302 327 48 0 chr12 3328973 3329100 -140457355 - MIR SINE MIR -63 145 33 21 0 0 0 chr12 3329298 3329319 -140457136 + GC_rich Low_complexity Low_complexity 1 21 0 191 219 24 0 chr12 3329616 3329657 -140456798 - MIR SINE MIR -118 144 103 295 303 15 38 chr12 3331932 3332064 -140454391 - L2 LINE L2 -1 3312 3184 219 256 33 78 chr12 3332043 3332133 -140454322 + L2 LINE L2 3148 3233 -80 * 267 289 19 19 chr12 3332681 3332785 -140453670 + CT-rich Low_complexity Low_complexity 1 104 0 2206 114 0 3 chr12 3333110 3333416 -140453039 - AluSx SINE Alu -7 305 1 379 269 83 40 chr12 3333489 3333641 -140452814 - MIR SINE MIR -58 150 6 1865 113 17 26 chr12 3335311 3335613 -140450842 + AluSg SINE Alu 1 299 -11 785 184 45 133 chr12 3335626 3335963 -140450492 + MLT1A1 LTR MaLR 1 307 -58 2025 104 7 23 chr12 3336321 3336629 -140449826 + AluSg SINE Alu 1 303 -7 1507 243 95 95 chr12 3336644 3336902 -140449553 - HAL1 LINE L1 -79 2428 2172 2154 35 24 12 chr12 3336902 3337156 -140449299 - AluY SINE Alu -19 292 36 1507 243 95 95 chr12 3337156 3337207 -140449248 - HAL1 LINE L1 -335 2172 2123 1845 157 61 0 chr12 3337207 3337500 -140448955 + AluJb SINE Alu 1 311 -1 1507 243 95 95 chr12 3337500 3337757 -140448698 - HAL1 LINE L1 -384 2123 1868 2240 110 10 0 chr12 3337757 3338057 -140448398 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338057 3338340 -140448115 - HAL1 LINE L1 -639 1868 1587 1973 151 0 29 chr12 3338340 3338652 -140447803 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338652 3339116 -140447339 - HAL1 LINE L1 -920 1587 1105 611 279 109 20 chr12 3339117 3339364 -140447091 - MLT1J LTR MaLR 0 511 243 1777 98 114 4 chr12 3339827 3340081 -140446374 - AluSq SINE Alu -31 282 1 414 282 60 0 chr12 3340086 3340203 -140446252 - HAL1 LINE L1 -1558 949 826 734 164 15 15 chr12 3340266 3340400 -140446055 + AluJo SINE Alu 2 135 -177 1810 188 0 0 chr12 3340400 3340692 -140445763 + AluSx SINE Alu 1 292 -20 3762 150 71 50 chr12 3340692 3341456 -140444999 - L1MB8 LINE L1 -57 6121 5374 1986 155 7 0 chr12 3341456 3341746 -140444709 - AluSx SINE Alu -20 292 1 3762 150 71 50 chr12 3341746 3341880 -140444575 - L1MB8 LINE L1 -804 5374 5244 1861 141 19 48 chr12 3341880 3342049 -140444406 - AluJo SINE Alu -8 304 147 2619 53 0 3 chr12 3342049 3342353 -140444102 - AluY SINE Alu -8 303 1 1861 141 19 48 chr12 3342353 3342496 -140443959 - AluJo SINE Alu -165 147 1 3762 150 71 50 chr12 3342496 3342601 -140443854 - L1MB8 LINE L1 -934 5244 5093 654 276 45 76 chr12 3342605 3342986 -140443469 - HAL1 LINE L1 -1703 804 436 855 181 0 0 chr12 3343014 3343152 -140443303 - FLAM_C SINE Alu -5 138 1 251 285 62 28 chr12 3343395 3343539 -140442916 - HAL1 LINE L1 -2358 149 1 455 289 64 46 chr12 3344479 3344697 -140441758 - MIR SINE MIR -40 222 1 258 302 57 0 chr12 3345316 3345428 -140441027 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3347468 3347583 -140438872 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3347627 3347936 -140438519 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3348355 3348663 -140437792 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3348673 3348741 -140437714 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3351192 3351341 -140435114 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3351940 3352080 -140434375 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3352080 3352301 -140434154 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3352504 3352802 -140433653 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3354303 3354421 -140432034 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3354479 3354521 -140431934 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3354730 3354923 -140431532 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3356068 3356155 -140430300 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3356173 3356253 -140430202 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3356307 3356742 -140429713 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3357299 3357320 -140429135 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3357449 3357759 -140428696 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3357792 3357867 -140428588 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3358258 3358552 -140427903 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3359649 3359782 -140426673 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3359813 3360034 -140426421 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3360034 3360340 -140426115 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3360340 3360471 -140425984 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3361046 3361240 -140425215 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3361281 3361415 -140425040 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3361424 3361725 -140424730 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3361725 3361827 -140424628 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3361827 3362120 -140424335 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3362120 3362292 -140424163 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3362457 3363198 -140423257 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3363200 3363254 -140423201 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3363254 3363542 -140422913 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3363542 3363576 -140422879 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3363612 3363867 -140422588 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3363881 3363961 -140422494 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3363977 3364034 -140422421 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3364035 3364218 -140422237 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3364226 3364295 -140422160 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3364296 3364343 -140422112 - AluS SINE Alu -22 278 233 256 279 113 81 chr12 3364346 3364432 -140422023 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3364432 3364713 -140421742 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3364713 3364848 -140421607 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3365017 3365326 -140421129 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3365339 3365727 -140420728 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3365924 3366110 -140420345 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3366188 3366485 -140419970 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3366485 3366797 -140419658 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3366843 3367156 -140419299 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3367163 3367307 -140419148 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3367493 3367579 -140418876 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3367579 3367814 -140418641 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3368299 3368391 -140418064 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3368779 3368922 -140417533 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3369127 3369256 -140417199 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3369370 3369485 -140416970 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3369959 3370150 -140416305 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3371077 3371098 -140415357 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3371187 3371494 -140414961 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3371723 3371750 -140414705 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3371761 3371989 -140414466 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3371998 3372308 -140414147 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3372331 3372625 -140413830 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3373190 3373494 -140412961 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3373746 3374254 -140412201 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3374270 3375200 -140411255 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3375200 3375505 -140410950 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3375505 3375627 -140410828 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3375648 3376235 -140410220 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3376229 3376361 -140410094 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3376361 3376635 -140409820 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3376635 3376714 -140409741 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3376826 3376987 -140409468 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3377022 3377132 -140409323 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3377148 3377624 -140408831 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3377624 3377928 -140408527 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3377928 3378162 -140408293 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3378162 3378655 -140407800 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3378668 3378896 -140407559 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3378897 3379201 -140407254 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3379201 3379403 -140407052 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3379406 3379707 -140406748 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3379722 3380388 -140406067 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3380388 3380549 -140405906 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3380549 3380803 -140405652 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3380827 3381097 -140405358 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3381187 3381494 -140404961 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3381560 3381868 -140404587 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3382658 3382694 -140403761 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3382852 3383037 -140403418 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3383085 3383212 -140403243 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3383609 3383660 -140402795 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3383670 3383786 -140402669 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3384950 3385263 -140401192 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3385268 3385567 -140400888 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3385629 3385905 -140400550 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3386038 3386284 -140400171 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3386596 3386712 -140399743 + MER94 DNA DNA 10 134 0 180 257 43 29 chr12 3386912 3386982 -140399473 - L3b LINE CR1 -353 1230 1160 1871 124 42 35 chr12 3387149 3387432 -140399023 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3387453 3387774 -140398681 + AluJo SINE Alu 33 311 -1 299 267 184 73 chr12 3387785 3387873 -140398582 - MIR SINE MIR -6 256 179 2360 77 7 0 chr12 3387873 3388173 -140398282 - AluSx SINE Alu 0 312 5 299 267 184 73 chr12 3388173 3388290 -140398165 - MIR SINE MIR -83 179 28 1361 169 61 32 chr12 3388784 3389063 -140397392 - AluJo SINE Alu -25 287 1 1715 113 21 17 chr12 3389157 3389448 -140397007 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3390062 3390127 -140396328 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3390169 3390189 -140396266 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3390241 3390263 -140396192 + GC_rich Low_complexity Low_complexity 1 22 0 197 189 0 0 chr12 3391126 3391163 -140395292 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3391648 3391755 -140394700 - MIR3 SINE MIR 0 262 150 2166 101 3 0 chr12 3391755 3392051 -140394404 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3392051 3392220 -140394235 - MIR3 SINE MIR -112 150 3 2216 125 0 0 chr12 3392229 3392542 -140393913 - AluSq SINE Alu 0 313 1 1758 141 9 58 chr12 3392544 3392870 -140393585 - AluJo SINE Alu -2 310 1 234 306 117 18 chr12 3392900 3393011 -140393444 + MIR3 SINE MIR 68 189 -19 755 152 78 86 chr12 3393079 3393110 -140393345 - L1MB2 LINE L1 -7 6164 6134 2110 101 3 10 chr12 3393110 3393416 -140393039 - AluSg SINE Alu -5 305 2 755 152 78 86 chr12 3393416 3393618 -140392837 - L1MB2 LINE L1 -37 6134 5929 478 339 30 0 chr12 3393797 3393965 -140392490 + MIR SINE MIR 90 262 0 1307 177 78 35 chr12 3394465 3394590 -140391865 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3394590 3394629 -140391826 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3394628 3394653 -140391802 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1307 177 78 35 chr12 3394629 3394809 -140391646 + AluJo SINE Alu 119 294 -18 227 299 58 11 chr12 3394811 3394898 -140391557 - L2 LINE L2 -49 3264 3174 231 253 80 0 chr12 3395235 3395310 -140391145 - L2 LINE L2 0 3313 3233 205 260 0 0 chr12 3395609 3395659 -140390796 + L2 LINE L2 3178 3227 -86 469 309 94 6 chr12 3396138 3396319 -140390136 - MER117 DNA MER1_type 0 197 1 199 330 11 32 chr12 3397497 3397591 -140388864 - MIR SINE MIR -66 196 105 600 190 157 0 chr12 3397902 3398023 -140388432 + AluSg SINE Alu 3 142 -168 334 285 29 44 chr12 3398389 3398526 -140387929 + MIR3 SINE MIR 52 186 -22 230 288 30 15 chr12 3399518 3399584 -140386871 - MER91C DNA MER1_type -1 189 123 1570 157 49 28 chr12 3400036 3400322 -140386133 + AluJo SINE Alu 1 292 -20 2027 120 3 3 chr12 3400326 3400617 -140385838 + AluSg SINE Alu 3 293 -17 239 224 53 13 chr12 3400620 3400696 -140385759 + MER91C DNA MER1_type 62 140 0 2477 62 0 0 chr12 3401749 3402053 -140384402 + AluY SINE Alu 1 304 -7 916 140 17 51 chr12 3402419 3402597 -140383858 + AluSg/x SINE Alu 129 300 -10 307 279 43 91 chr12 3402606 3402814 -140383641 + HAL1 LINE L1 1557 1754 -753 833 127 0 0 chr12 3402881 3403007 -140383448 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3403172 3403225 -140383230 + AT_rich Low_complexity Low_complexity 1 53 0 1248 192 54 23 chr12 3456888 3457148 -140329307 + AluJo SINE Alu 34 301 -11 224 307 29 21 chr12 3457912 3458052 -140328403 + (CCCCAG)n Simple_repeat Simple_repeat 2 142 0 284 286 20 10 chr12 3459635 3459733 -140326722 + MIR SINE MIR 148 246 -16 310 197 0 15 chr12 3460148 3460214 -140326241 - L3 LINE CR1 -116 1461 1397 356 299 81 40 chr12 3461282 3461456 -140324999 + MIR SINE MIR 80 260 -2 198 337 51 10 chr12 3462363 3462461 -140323994 + MIR SINE MIR 128 229 -33 190 330 65 60 chr12 3462473 3462658 -140323797 - L2 LINE L2 -15 3257 3072 1218 308 63 9 chr12 3462691 3463350 -140323105 - L2 LINE L2 -2 3311 2614 289 309 41 0 chr12 3463489 3463586 -140322869 - L2 LINE L2 -710 2604 2504 286 238 107 0 chr12 3465150 3465234 -140321221 + MIR3 SINE MIR 84 176 -32 1193 178 53 0 chr12 3465284 3465492 -140320963 + MER20 DNA MER1_type 1 219 0 228 268 14 14 chr12 3466307 3466378 -140320077 + L2 LINE L2 3203 3273 -40 323 95 5 0 chr12 3466968 3467028 -140319427 + Alu SINE Alu 1 43 -265 325 282 17 86 chr12 3467934 3468108 -140318347 - L3 LINE CR1 -125 1452 1291 471 287 98 6 chr12 3468118 3468282 -140318173 - L3 LINE CR1 -486 1091 913 232 46 32 208 chr12 3470083 3470299 -140316156 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 211 329 106 29 chr12 3472105 3472275 -140314180 + MIR SINE MIR 80 262 0 409 316 75 0 chr12 3473127 3473260 -140313195 - MIR SINE MIR -20 242 100 330 298 124 8 chr12 3473583 3473704 -140312751 - MIR SINE MIR -79 183 49 470 322 103 14 chr12 3474608 3474822 -140311633 + MIR SINE MIR 29 261 -1 431 321 45 0 chr12 3476211 3476345 -140310110 + MIR3 SINE MIR 69 208 0 291 254 156 18 chr12 3476348 3476486 -140309969 - MIR SINE MIR -65 143 35 188 227 114 0 chr12 3476595 3476639 -140309816 - MIR SINE MIR -76 132 84 637 239 49 117 chr12 3478065 3478329 -140308126 + MIR SINE MIR 15 260 -2 190 309 160 11 chr12 3478903 3478997 -140307458 + L2 LINE L2 3201 3308 -5 316 311 57 0 chr12 3479414 3479520 -140306935 + L2 LINE L2 2268 2379 -935 431 302 242 14 chr12 3479544 3480119 -140306336 + L2 LINE L2 2498 3311 -2 291 300 44 0 chr12 3480357 3480447 -140306008 + MIR SINE MIR 77 170 -92 352 381 22 0 chr12 3484817 3484956 -140301499 + MIR SINE MIR 121 262 0 195 376 30 0 chr12 3485382 3485483 -140300972 - MIR SINE MIR -9 253 150 193 268 115 70 chr12 3485564 3485721 -140300734 - MER5A DNA MER1_type -23 166 3 538 234 86 25 chr12 3486003 3486200 -140300255 - MIR SINE MIR -20 242 34 329 271 30 8 chr12 3487929 3488062 -140298393 + L1ME4a LINE L1 5981 6116 -5 250 316 13 0 chr12 3488507 3488586 -140297869 + GA-rich Low_complexity Low_complexity 3 82 0 359 330 54 0 chr12 3489699 3489811 -140296644 + MIR SINE MIR 30 147 -61 223 323 50 10 chr12 3490858 3490957 -140295498 + MIR SINE MIR 104 206 -56 183 351 108 18 chr12 3492102 3492213 -140294242 - L3b LINE CR1 -2 1581 1461 2180 149 96 15 chr12 3493181 3493577 -140292878 + MSTA LTR MaLR 1 428 0 404 318 80 17 chr12 3496091 3496267 -140290188 + MIR SINE MIR 70 256 -6 201 306 32 0 chr12 3496759 3496821 -140289634 - MIR SINE MIR -87 121 58 336 341 61 12 chr12 3496975 3497139 -140289316 + MIR3 SINE MIR 1 172 -36 793 336 48 12 chr12 3498271 3498685 -140287770 - L1ME LINE L1 -338 5783 5355 250 306 24 12 chr12 3498831 3498916 -140287539 + MIR SINE MIR 1 86 -176 365 291 88 20 chr12 3498934 3499082 -140287373 + MIR SINE MIR 3 160 -102 442 305 64 11 chr12 3499311 3499498 -140286957 + L1MC5 LINE L1 7729 7925 -36 211 288 62 12 chr12 3499805 3499885 -140286570 + MIR SINE MIR 24 107 -101 338 292 84 8 chr12 3501252 3501404 -140285051 + MIR3 SINE MIR 4 146 -62 228 217 22 0 chr12 3501477 3501523 -140284932 + G-rich Low_complexity Low_complexity 1 47 0 220 336 89 59 chr12 3502405 3502676 -140283779 + L2 LINE L2 2973 3251 -21 725 286 95 9 chr12 3503020 3503251 -140283204 + MIR SINE MIR 12 262 0 519 346 13 34 chr12 3503188 3503425 -140283030 - MIR SINE MIR -16 246 15 * 489 303 82 26 chr12 3504014 3504209 -140282246 - MIR SINE MIR -56 206 1 492 18 0 0 chr12 3504266 3504323 -140282132 + (TA)n Simple_repeat Simple_repeat 1 57 0 2345 51 0 69 chr12 3504328 3504662 -140281793 - AluY SINE Alu 0 311 1 194 265 0 82 chr12 3505064 3505162 -140281293 - L2 LINE L2 -19 3294 3205 287 285 46 46 chr12 3505748 3505878 -140280577 + L1ME3A LINE L1 5610 5739 -423 377 294 12 12 chr12 3505882 3506045 -140280410 + L1ME3A LINE L1 5788 5950 -220 234 339 57 24 chr12 3506518 3506752 -140279703 + L3 LINE CR1 1190 1471 -106 374 314 52 7 chr12 3506837 3506990 -140279465 + MER5B DNA MER1_type 17 176 -2 274 271 112 9 chr12 3508222 3508329 -140278126 - MIR SINE MIR -71 137 20 23 0 0 0 chr12 3508417 3508440 -140278015 + AT_rich Low_complexity Low_complexity 1 23 0 1150 204 109 48 chr12 3510374 3510814 -140275641 + MLT1C LTR MaLR 1 467 0 495 279 127 33 chr12 3511003 3511157 -140275298 + MIR SINE MIR 15 190 -72 1729 164 0 50 chr12 3511157 3511474 -140274981 - AluJo SINE Alu -11 301 1 495 279 127 33 chr12 3511474 3511548 -140274907 + MIR SINE MIR 190 256 -6 519 202 0 0 chr12 3512643 3512727 -140273728 + FRAM/FAM SINE Alu 1 83 -93 332 281 0 0 chr12 3512731 3512795 -140273660 + L1MC4 LINE L1 6638 6701 -1341 774 32 0 0 chr12 3512795 3512888 -140273567 + (CA)n Simple_repeat Simple_repeat 2 94 0 600 123 0 0 chr12 3512899 3512980 -140273475 - FLAM_A SINE Alu -18 124 44 347 342 37 43 chr12 3514981 3515168 -140271287 + MIR3 SINE MIR 16 201 -7 199 354 62 26 chr12 3515316 3515429 -140271026 + L3b LINE CR1 1269 1385 -198 573 263 13 13 chr12 3515530 3515686 -140270769 + MER5B DNA MER1_type 10 165 -13 214 309 60 48 chr12 3515813 3515897 -140270558 - MIR SINE MIR -70 192 108 267 323 30 20 chr12 3517313 3517412 -140269043 + L2 LINE L2 3169 3268 -4 1748 163 51 0 chr12 3517599 3517875 -140268580 + AluJo SINE Alu 1 290 -22 2175 124 0 3 chr12 3517882 3518188 -140268267 + AluSx SINE Alu 1 305 -7 186 86 0 86 chr12 3519219 3519254 -140267201 + MIR SINE MIR 11 42 -220 2135 103 34 0 chr12 3519377 3519668 -140266787 - AluSq SINE Alu -12 301 1 1412 62 42 10 chr12 3519677 3519869 -140266586 - L1PA7 LINE L1 0 6154 5957 323 414 53 10 chr12 3521523 3521731 -140264724 - MIR SINE MIR -23 239 23 866 236 10 10 chr12 3525349 3525548 -140260907 - MIR3 SINE MIR -5 203 5 801 153 30 0 chr12 3526968 3527099 -140259356 + AluJo SINE Alu 1 135 -177 465 226 140 12 chr12 3527102 3527266 -140259189 + L1ME3A LINE L1 4407 4591 -1555 2113 134 0 0 chr12 3527271 3527578 -140258877 + AluSg SINE Alu 1 307 -3 517 281 118 52 chr12 3527946 3528495 -140257960 + L1ME3A LINE L1 4549 5060 -1273 1967 152 0 7 chr12 3528495 3528804 -140257651 + AluJo SINE Alu 1 307 -5 517 281 118 52 chr12 3528804 3529340 -140257115 + L1ME3A LINE L1 5060 5659 -674 1304 65 12 0 chr12 3529384 3529554 -140256901 - AluY SINE Alu -7 304 133 2667 36 0 0 chr12 3529554 3529863 -140256592 - AluY SINE Alu -2 309 1 220 222 37 0 chr12 3530008 3530062 -140256393 + MER5C DNA MER1_type 267 322 -2 544 339 60 3 chr12 3530062 3530277 -140256178 + L1ME3A LINE L1 5647 5885 -285 2331 97 0 0 chr12 3530277 3530585 -140255870 - AluSg SINE Alu -1 309 2 544 339 60 3 chr12 3530585 3530667 -140255788 + L1ME3A LINE L1 5885 5961 -209 183 42 0 0 chr12 3532937 3532961 -140253494 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 221 208 0 21 chr12 3533260 3533308 -140253147 + L2 LINE L2 3267 3313 0 234 176 14 95 chr12 3536229 3536303 -140250152 - L2 LINE L2 0 3313 3246 370 283 42 0 chr12 3536936 3537056 -140249399 - MIR3 SINE MIR -42 166 42 21 36 0 0 chr12 3538694 3538722 -140247733 + GC_rich Low_complexity Low_complexity 1 28 0 272 274 88 35 chr12 3540226 3540339 -140246116 + L2 LINE L2 3154 3272 0 248 260 62 21 chr12 3540413 3540509 -140245946 - L2 LINE L2 -35 3237 3138 447 175 0 52 chr12 3540644 3540938 -140245517 + (CTGTG)n Simple_repeat Simple_repeat 1 278 0 270 130 0 172 chr12 3540947 3541162 -140245293 + (TGG)n Simple_repeat Simple_repeat 3 180 0 * 338 176 0 78 chr12 3541069 3541262 -140245193 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 * 451 160 0 103 chr12 3541199 3541599 -140244856 + (TGG)n Simple_repeat Simple_repeat 1 358 0 342 155 0 82 chr12 3541647 3541841 -140244614 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 460 288 25 16 chr12 3542312 3542497 -140243958 + MIR SINE MIR 30 218 -44 397 211 0 11 chr12 3542968 3543058 -140243397 - MIR SINE MIR -54 208 120 1934 162 3 0 chr12 3544854 3545157 -140241298 + AluJb SINE Alu 1 304 -8 216 352 39 31 chr12 3545284 3545412 -140241043 + L2 LINE L2 3128 3256 -16 206 265 162 0 chr12 3545598 3545666 -140240789 + L2 LINE L2 3193 3271 -42 229 265 0 0 chr12 3545667 3545716 -140240739 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 279 296 68 74 chr12 3546361 3546523 -140239932 + MIR SINE MIR 6 166 -96 543 307 131 65 chr12 3546742 3547873 -140238582 + L2 LINE L2 2127 3310 -3 315 269 130 9 chr12 3547986 3548094 -140238361 + MIR3 SINE MIR 72 192 -16 385 331 163 16 chr12 3548384 3548704 -140237751 + L2 LINE L2 2906 3272 0 234 0 0 0 chr12 3551284 3551310 -140235145 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 196 118 0 0 chr12 3551316 3551350 -140235105 + MIR SINE MIR 116 149 -113 326 260 120 0 chr12 3551933 3552033 -140234422 - MIR SINE MIR -63 145 34 655 239 133 16 chr12 3552443 3552631 -140233824 + MER63A DNA MER1_type 1 210 0 714 257 236 3 chr12 3552866 3552963 -140233492 + L2 LINE L2 2708 2781 -532 282 29 0 0 chr12 3552963 3552998 -140233457 + (CA)n Simple_repeat Simple_repeat 2 36 0 714 257 236 3 chr12 3552998 3553248 -140233207 + L2 LINE L2 2781 3124 -189 236 284 99 0 chr12 3553236 3553317 -140233138 + L2 LINE L2 3225 3313 0 * 237 288 30 0 chr12 3554050 3554116 -140232339 + MER4A LTR ERV1 26 93 -571 267 231 15 15 chr12 3554340 3554405 -140232050 + L2 LINE L2 3206 3270 -2 242 160 20 0 chr12 3555066 3555116 -140231339 + CT-rich Low_complexity Low_complexity 1 51 0 1809 156 16 25 chr12 3555116 3555430 -140231025 - AluJb SINE Alu -1 311 1 209 265 169 36 chr12 3555694 3555777 -140230678 - MIR SINE MIR -95 113 20 350 345 63 11 chr12 3555805 3555979 -140230476 + MER5A DNA MER1_type 7 189 0 234 295 80 36 chr12 3556895 3557007 -140229448 + L2 LINE L2 3197 3313 0 331 306 139 6 chr12 3557769 3557942 -140228513 + MIR SINE MIR 2 197 -65 278 271 131 14 chr12 3558085 3558244 -140228211 + MIR SINE MIR 20 177 -72 381 318 94 5 chr12 3558351 3558574 -140227881 - L3 LINE CR1 -254 1323 1081 182 240 20 0 chr12 3558593 3558643 -140227812 + L2 LINE L2 3202 3252 -20 573 258 96 40 chr12 3558971 3559046 -140227409 - MER112 DNA MER1_type 0 260 191 1313 196 154 0 chr12 3559046 3559306 -140227149 - AluJo SINE Alu -2 300 1 573 258 96 40 chr12 3559306 3559428 -140227027 - MER112 DNA MER1_type -69 191 52 258 314 204 0 chr12 3560032 3560204 -140226251 + L3b LINE CR1 1223 1429 -154 212 280 0 0 chr12 3560877 3560927 -140225528 - L2 LINE L2 -12 3301 3252 2184 104 0 10 chr12 3560950 3561259 -140225196 + AluSq SINE Alu 1 306 -7 1996 132 0 0 chr12 3561808 3562097 -140224358 + AluSx SINE Alu 1 289 -23 2190 90 0 0 chr12 3562104 3562392 -140224063 + AluY SINE Alu 1 288 -23 23 0 0 0 chr12 3562423 3562446 -140224009 + AT_rich Low_complexity Low_complexity 1 23 0 203 216 20 0 chr12 3563363 3563414 -140223041 + L2 LINE L2 3190 3241 -31 2558 39 0 0 chr12 3564659 3564967 -140221488 + AluY SINE Alu 1 308 -3 269 272 22 88 chr12 3565095 3565174 -140221281 - MIR3 SINE MIR -4 204 136 1854 144 28 0 chr12 3565174 3565465 -140220990 + AluJo SINE Alu 1 299 -13 269 272 22 88 chr12 3565465 3565521 -140220934 - MIR3 SINE MIR -72 136 78 208 227 23 0 chr12 3565684 3565728 -140220727 + GA-rich Low_complexity Low_complexity 1 45 0 1401 169 64 14 chr12 3565747 3566042 -140220413 + AluJo SINE Alu 1 310 -2 204 359 66 0 chr12 3566098 3566265 -140220190 - L2 LINE L2 -222 3050 2873 407 262 100 57 chr12 3568181 3568410 -140218045 - L2 LINE L2 -34 3279 3041 271 333 16 32 chr12 3568420 3568543 -140217912 - L2 LINE L2 -655 2659 2539 189 313 90 0 chr12 3568564 3568631 -140217824 - L2 LINE L2 -939 2375 2303 569 231 137 40 chr12 3569341 3569582 -140216873 - MIR SINE MIR -5 257 3 308 305 58 58 chr12 3569976 3570150 -140216305 - MIR SINE MIR -41 221 48 247 145 177 16 chr12 3572253 3572315 -140214140 + L1P2 LINE L1 5392 5463 -692 * 1102 244 74 36 chr12 3572290 3572444 -140214011 + L1ME3A LINE L1 5791 5938 -232 2376 90 0 0 chr12 3572444 3572756 -140213699 + AluSx SINE Alu 1 312 0 1102 244 74 36 chr12 3572756 3572966 -140213489 + L1ME3A LINE L1 5938 6169 -1 251 241 63 0 chr12 3573074 3573153 -140213302 + MIR3 SINE MIR 125 208 0 222 171 0 0 chr12 3573919 3573960 -140212495 + MIR SINE MIR 109 149 -113 341 286 184 24 chr12 3574543 3574711 -140211744 - MIR3 SINE MIR 0 208 14 358 338 14 0 chr12 3574728 3574876 -140211579 + MER117 DNA MER1_type 21 170 -27 206 333 0 0 chr12 3575133 3575187 -140211268 - L2 LINE L2 0 3272 3219 248 244 179 0 chr12 3576366 3576444 -140210011 - L2 LINE L2 0 3313 3222 2093 132 80 66 chr12 3577183 3577563 -140208892 - MSTB1 LTR MaLR 0 432 59 817 204 7 7 chr12 3577563 3577715 -140208740 + FRAM SINE Alu 3 154 -12 426 39 0 0 chr12 3577716 3577768 -140208687 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2093 132 80 66 chr12 3577768 3577811 -140208644 - MSTB1 LTR MaLR -372 60 1 3905 152 47 46 chr12 3578051 3578308 -140208147 + L1MB8 LINE L1 4904 5159 -1019 2142 95 3 7 chr12 3578308 3578603 -140207852 - AluSp SINE Alu -19 294 1 3905 152 47 46 chr12 3578603 3579581 -140206874 + L1MB8 LINE L1 5159 6128 -50 1966 135 47 75 chr12 3579592 3579828 -140206627 - MLT1B LTR MaLR 0 390 168 710 203 0 0 chr12 3579828 3579956 -140206499 - FLAM_C SINE Alu -5 128 1 1966 135 47 75 chr12 3579956 3580120 -140206335 - MLT1B LTR MaLR -222 168 1 518 246 42 36 chr12 3580186 3580353 -140206102 - MIR3 SINE MIR -36 172 5 2285 89 0 0 chr12 3580797 3581088 -140205367 - AluSg SINE Alu -8 302 12 222 315 111 9 chr12 3581799 3581907 -140204548 + MIR SINE MIR 20 138 -70 398 283 215 16 chr12 3581934 3582125 -140204330 - MIR SINE MIR -16 246 18 2357 60 0 7 chr12 3582140 3582438 -140204017 + AluY SINE Alu 1 296 -15 2144 108 0 19 chr12 3582733 3583047 -140203408 + AluSx SINE Alu 1 308 -4 875 196 31 18 chr12 3583925 3584088 -140202367 - FRAM SINE Alu -11 165 1 644 280 18 0 chr12 3584350 3584518 -140201937 + Charlie8 DNA MER1_type 1 171 -2246 183 156 0 0 chr12 3584936 3584968 -140201487 + GA-rich Low_complexity Low_complexity 1 32 0 291 28 0 0 chr12 3585494 3585530 -140200925 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 67 0 0 chr12 3585664 3585694 -140200761 + (CA)n Simple_repeat Simple_repeat 1 30 0 210 203 0 34 chr12 3585789 3585848 -140200607 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 189 0 0 0 chr12 3586452 3586473 -140199982 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2190 108 0 7 chr12 3586653 3586960 -140199495 + AluSx SINE Alu 1 305 -7 1196 85 0 0 chr12 3587601 3587754 -140198701 - AluSg/x SINE Alu -13 297 145 277 279 0 0 chr12 3588320 3588388 -140198067 + (CA)n Simple_repeat Simple_repeat 1 68 0 257 250 0 0 chr12 3589199 3589255 -140197200 + MIR SINE MIR 73 128 -80 395 348 66 22 chr12 3589346 3589573 -140196882 + L2 LINE L2 3036 3272 0 495 295 8 14 chr12 3589665 3589833 -140196622 - MER5A DNA MER1_type -10 179 1 313 235 29 0 chr12 3591318 3591386 -140195069 + MIR3 SINE MIR 115 184 -24 759 238 11 32 chr12 3591772 3591961 -140194494 - MER3 DNA MER1_type -2 207 23 443 322 78 6 chr12 3592500 3592680 -140193775 - MIR SINE MIR -56 206 14 337 257 22 81 chr12 3592964 3593100 -140193355 + L2 LINE L2 3155 3282 -31 487 261 29 7 chr12 3593357 3593495 -140192960 - MIR3 SINE MIR -3 205 65 694 268 91 25 chr12 3594872 3595115 -140191340 - MLT1C LTR MaLR -9 458 200 2004 116 14 0 chr12 3595140 3595424 -140191031 + AluSx SINE Alu 1 288 -24 248 0 31 0 chr12 3595427 3595459 -140190996 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3241 196 33 130 chr12 3595460 3596776 -140189679 + L1MC4a LINE L1 6545 7721 -87 405 258 172 8 chr12 3597402 3597530 -140188925 + MIR SINE MIR 81 229 -33 200 285 203 32 chr12 3599294 3599417 -140187038 - MER5C DNA MER1_type -177 147 4 1695 145 81 7 chr12 3599693 3599976 -140186479 + AluJb SINE Alu 1 304 -8 1235 144 24 124 chr12 3600781 3601079 -140185376 + AluJb SINE Alu 35 302 -10 217 250 36 12 chr12 3601482 3601566 -140184889 - MIR SINE MIR -84 124 39 320 282 29 10 chr12 3603036 3603139 -140183316 + MIR SINE MIR 103 207 -55 218 179 0 54 chr12 3603226 3603282 -140183173 + MIR SINE MIR 28 80 -182 1748 156 0 11 chr12 3604155 3604438 -140182017 + AluJo SINE Alu 1 280 -32 434 276 115 29 chr12 3605025 3605199 -140181256 + MIR3 SINE MIR 20 208 0 235 311 141 67 chr12 3605536 3605671 -140180784 - MIR SINE MIR -80 182 38 22 0 0 0 chr12 3606143 3606165 -140180290 + AT_rich Low_complexity Low_complexity 1 22 0 244 383 57 19 chr12 3606796 3607005 -140179450 + L3 LINE CR1 986 1202 -375 3568 178 30 14 chr12 3607009 3607781 -140178674 + L1MB5 LINE L1 5391 6174 0 186 394 0 39 chr12 3607798 3607902 -140178553 + L3 LINE CR1 1222 1321 -256 484 313 60 20 chr12 3607936 3608137 -140178318 - MIR SINE MIR -1 261 53 345 294 161 6 chr12 3608224 3608404 -140178051 + MIR SINE MIR 55 262 0 729 266 22 5 chr12 3608758 3608942 -140177513 - MIR SINE MIR -3 259 73 760 329 29 0 chr12 3609822 3610068 -140176387 - MIR SINE MIR -6 256 4 2470 159 49 2 chr12 3610334 3610780 -140175675 + L1MB3 LINE L1 5715 6181 -2 778 142 18 0 chr12 3610983 3611096 -140175359 - FLAM_A SINE Alu -18 115 1 1074 191 15 0 chr12 3611410 3611609 -140174846 + Tigger3b DNA MER2_type 4 205 -1026 630 149 0 47 chr12 3611635 3611742 -140174713 + FLAM_A SINE Alu 20 121 -21 1202 128 45 53 chr12 3611752 3611886 -140174569 + Tigger3b DNA MER2_type 204 337 -2691 2364 71 0 0 chr12 3611886 3612180 -140174275 + AluY SINE Alu 1 294 -17 1202 128 45 53 chr12 3612180 3612310 -140174145 + Tigger3b DNA MER2_type 337 466 -765 812 108 0 0 chr12 3612311 3612422 -140174033 - FLAM_C SINE Alu -32 111 1 29 0 0 0 chr12 3612424 3612453 -140174002 + AT_rich Low_complexity Low_complexity 1 29 0 630 141 11 0 chr12 3612486 3612578 -140173877 + FLAM_A SINE Alu 20 112 -30 622 106 0 53 chr12 3612588 3612629 -140173826 + MSTA LTR MaLR 322 364 -64 1558 158 102 11 chr12 3612629 3612914 -140173541 - AluJo SINE Alu -1 311 1 622 106 0 53 chr12 3612914 3612985 -140173470 + MSTA LTR MaLR 364 428 0 * 1290 157 23 35 chr12 3612985 3613313 -140173142 + Tigger3(Golem) DNA MER2_type 2732 3038 0 442 266 179 6 chr12 3613333 3613506 -140172949 - MIR SINE MIR -49 213 11 23 0 0 0 chr12 3614029 3614052 -140172403 + AT_rich Low_complexity Low_complexity 1 23 0 356 256 128 17 chr12 3614272 3614389 -140172066 - L1ME4a LINE L1 -28 6093 5964 388 272 44 34 chr12 3614407 3614457 -140171998 - L1ME4a LINE L1 -216 5905 5857 1888 159 0 16 chr12 3614457 3614765 -140171690 - AluJo SINE Alu -9 303 1 388 272 44 34 chr12 3614765 3614831 -140171624 - L1ME4a LINE L1 -264 5857 5793 1858 94 87 11 chr12 3614831 3615108 -140171347 + AluSp SINE Alu 1 298 -15 388 272 44 34 chr12 3615108 3615196 -140171259 - L1ME4a LINE L1 -328 5793 5698 542 281 41 12 chr12 3615729 3615900 -140170555 + MIR SINE MIR 84 259 -3 820 221 234 0 chr12 3616982 3617208 -140169247 + AluSg1 SINE Alu 1 279 -30 2194 54 54 0 chr12 3617209 3617486 -140168969 - AluY SINE Alu -19 292 1 352 298 122 50 chr12 3617543 3617646 -140168809 + MIR SINE MIR 6 100 -162 542 260 133 84 chr12 3617646 3617863 -140168592 - MER102b DNA MER1_type -1087 341 101 1944 145 0 55 chr12 3617863 3618188 -140168267 + AluJb SINE Alu 1 307 -5 542 260 133 84 chr12 3618188 3618293 -140168162 - MER102b DNA MER1_type -1327 101 3 352 298 122 50 chr12 3618293 3618427 -140168028 + MIR SINE MIR 100 260 -2 364 274 85 13 chr12 3618433 3618586 -140167869 - MIR3 SINE MIR -22 186 23 194 370 55 24 chr12 3618663 3618790 -140167665 + L2 LINE L2 3140 3270 -2 478 342 114 22 chr12 3621795 3622472 -140163983 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3622756 3622969 -140163486 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3623766 3624051 -140162404 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3624051 3624346 -140162109 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3624346 3624439 -140162016 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3624883 3625193 -140161262 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3626990 3627124 -140159331 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3627281 3627305 -140159150 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3627476 3627644 -140158811 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3628633 3628786 -140157669 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3630771 3631072 -140155383 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3632048 3632139 -140154316 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3632206 3632284 -140154171 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3634945 3634969 -140151486 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3635012 3635243 -140151212 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3635424 3635547 -140150908 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3635595 3635814 -140150641 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3636087 3636130 -140150325 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3636147 3636423 -140150032 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3636427 3636514 -140149941 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3638632 3638734 -140147721 + MIR SINE MIR 128 230 -32 818 250 88 0 chr12 3639613 3639805 -140146650 + MER3 DNA MER1_type 1 209 0 480 249 102 2 chr12 3640218 3640397 -140146058 - MIR SINE MIR -41 221 28 608 300 113 54 chr12 3641689 3642079 -140144376 - L2 LINE L2 0 3272 2860 449 272 105 42 chr12 3643328 3643519 -140142936 - MER115 DNA AcHobo -490 203 1 181 220 51 17 chr12 3645099 3645158 -140141297 + L2 LINE L2 2908 2968 -346 1095 186 48 5 chr12 3645711 3645921 -140140534 + MER20 DNA MER1_type 1 219 0 568 300 18 66 chr12 3646821 3647094 -140139361 - MIR SINE MIR 0 262 3 215 309 47 40 chr12 3647690 3647839 -140138616 + L2 LINE L2 2898 3047 -225 696 161 23 31 chr12 3649533 3649663 -140136792 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3649716 3649751 -140136704 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3652538 3652632 -140133823 + (CATG)n Simple_repeat Simple_repeat 3 102 0 212 317 0 0 chr12 3653309 3653369 -140133086 + L3 LINE CR1 1511 1570 -7 1315 214 101 14 chr12 3653846 3654201 -140132254 - MER88 LTR ERVL 0 464 79 277 340 62 7 chr12 3654259 3654403 -140132052 + MIR SINE MIR 83 234 -28 1090 209 78 76 chr12 3655870 3656292 -140130163 + L1MC5 LINE L1 7316 7738 -223 382 250 40 75 chr12 3656280 3656532 -140129923 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3656577 3656753 -140129702 + GA-rich Low_complexity Low_complexity 5 179 0 501 289 115 9 chr12 3657213 3657431 -140129024 - MIR SINE MIR -12 250 10 307 258 225 0 chr12 3657636 3657756 -140128699 - MIR3 SINE MIR -59 149 3 351 296 31 0 chr12 3658516 3658614 -140127841 - MIR SINE MIR -114 148 48 737 214 40 23 chr12 3658791 3658964 -140127491 + MER104 DNA MER2_type 1 176 -4 369 311 19 0 chr12 3659112 3659218 -140127237 + MIR SINE MIR 43 150 -58 445 197 242 0 chr12 3659797 3659929 -140126526 + MER5B DNA MER1_type 15 178 0 567 295 6 22 chr12 3660664 3660847 -140125608 + MIR3 SINE MIR 1 180 -28 183 304 0 38 chr12 3661713 3661792 -140124663 + L2 LINE L2 2409 2484 -830 182 306 69 38 chr12 3661888 3662048 -140124407 + L2 LINE L2 2718 2882 -432 328 306 45 0 chr12 3662108 3662219 -140124236 + MIR SINE MIR 6 121 -141 244 333 81 49 chr12 3662743 3662989 -140123466 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3663701 3663741 -140122714 + GA-rich Low_complexity Low_complexity 1 40 0 478 299 51 13 chr12 3663741 3663898 -140122557 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3664078 3664433 -140122022 + THE1C LTR MaLR 1 375 0 426 212 62 0 chr12 3665261 3665374 -140121081 - MER112 DNA MER1_type -8 252 133 2125 167 29 31 chr12 3665375 3665931 -140120524 - MLT2A2 LTR ERVL 0 554 1 363 288 46 86 chr12 3666092 3666242 -140120213 - MIR SINE MIR -1 261 108 1330 206 80 55 chr12 3666242 3666607 -140119848 - MLT1A2 LTR MaLR 0 374 1 363 288 46 86 chr12 3666607 3666693 -140119762 - MIR SINE MIR -154 108 20 290 297 99 0 chr12 3666927 3667038 -140119417 + L2 LINE L2 3188 3309 -4 262 280 102 8 chr12 3667057 3667175 -140119280 + MIR SINE MIR 25 153 -109 523 196 11 0 chr12 3668243 3668335 -140118120 - MER81 DNA DNA -21 93 1 595 344 130 4 chr12 3668393 3668861 -140117594 + L2 LINE L2 2100 2626 -688 249 285 39 54 chr12 3668866 3668900 -140117555 + L1ME4a LINE L1 5992 6025 -96 1942 225 44 24 chr12 3668900 3669358 -140117097 + MLT1C LTR MaLR 1 467 0 249 285 39 54 chr12 3669358 3669453 -140117002 + L1ME4a LINE L1 6025 6119 -2 1055 213 123 55 chr12 3669547 3669966 -140116489 + MER110A LTR ERV1 67 491 0 263 305 144 0 chr12 3669999 3670117 -140116338 - MIR SINE MIR -112 150 16 235 147 0 0 chr12 3670251 3670285 -140116170 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3671220 3671249 -140115206 + (TC)n Simple_repeat Simple_repeat 1 29 0 876 211 83 13 chr12 3671456 3671684 -140114771 + MIR SINE MIR 19 262 0 260 235 74 74 chr12 3672770 3672851 -140113604 - MIR3 SINE MIR -5 203 123 469 153 12 12 chr12 3673012 3673097 -140113358 + MIR SINE MIR 34 118 -144 750 260 72 13 chr12 3673102 3673337 -140113118 - MIR SINE MIR -11 251 3 710 274 29 20 chr12 3673463 3673667 -140112788 + MLT1J LTR MaLR 4 209 -302 831 325 6 0 chr12 3673667 3674005 -140112450 - L1M4 LINE L1 -3427 2719 2380 2191 88 0 20 chr12 3674032 3674329 -140112126 - AluSp SINE Alu -22 291 1 986 242 30 30 chr12 3674330 3674594 -140111861 + MLT1J LTR MaLR 199 462 -49 583 229 90 12 chr12 3676420 3676548 -140109907 - MER5A DNA MER1_type 0 189 44 420 227 27 36 chr12 3676548 3676658 -140109797 + MER81 DNA DNA 2 110 -4 583 229 90 12 chr12 3676658 3676695 -140109760 - MER5A DNA MER1_type -145 44 11 221 100 0 50 chr12 3676700 3676740 -140109715 + L3 LINE CR1 1532 1569 -8 362 295 76 88 chr12 3677391 3677801 -140108654 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3677989 3678012 -140108443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3678013 3678266 -140108189 - L1MA8 LINE L1 -402 5889 5635 1377 131 71 138 chr12 3678248 3678494 -140107961 + L1MA8 LINE L1 5848 6109 -182 * 1578 78 65 0 chr12 3678494 3678711 -140107744 - L1PA6 LINE L1 0 6154 5924 2417 60 0 13 chr12 3678716 3679017 -140107438 - AluY SINE Alu -7 304 8 1377 131 71 138 chr12 3679017 3679077 -140107378 + L1MA8 LINE L1 6113 6175 -116 353 22 0 0 chr12 3679077 3679123 -140107332 - MADE1 DNA Mariner 0 80 35 1377 131 71 138 chr12 3679123 3679229 -140107226 + L1MA8 LINE L1 6175 6281 -10 230 215 129 21 chr12 3679713 3679806 -140106649 - MIR SINE MIR -86 122 20 479 268 56 0 chr12 3679838 3679980 -140106475 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3680350 3680506 -140105949 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1783 135 0 0 chr12 3680514 3680774 -140105681 - AluSx SINE Alu -52 260 1 445 269 27 54 chr12 3681266 3681415 -140105040 + MIR SINE MIR 48 192 -70 388 212 59 34 chr12 3682295 3682317 -140104138 - MIR SINE MIR -32 230 210 1393 184 34 13 chr12 3682317 3682551 -140103904 + MER8 DNA MER2_type 1 239 0 388 212 59 34 chr12 3682551 3682646 -140103809 - MIR SINE MIR -52 210 110 281 257 40 0 chr12 3682648 3682722 -140103733 - MER94 DNA DNA -33 101 25 247 278 56 0 chr12 3683838 3683910 -140102545 - MIR SINE MIR -70 192 117 420 240 48 10 chr12 3684239 3684343 -140102112 - MER91C DNA MER1_type -30 110 3 638 263 78 10 chr12 3684724 3684917 -140101538 + MLT1J LTR MaLR 2 175 -275 812 213 41 0 chr12 3685023 3685192 -140101263 - MER5A DNA MER1_type -1 188 13 414 191 77 101 chr12 3685192 3685360 -140101095 + MLT1J LTR MaLR 312 475 -36 249 326 130 19 chr12 3685654 3685869 -140100586 + L2 LINE L2 1814 2052 -1262 189 363 133 7 chr12 3686442 3686577 -140099878 - L2 LINE L2 0 3272 3121 204 321 0 25 chr12 3687296 3687377 -140099078 + L3b LINE CR1 1317 1395 -188 21 0 0 0 chr12 3687439 3687460 -140098995 + AT_rich Low_complexity Low_complexity 1 21 0 6693 224 88 63 chr12 3687657 3689319 -140097136 - L1ME2 LINE L1 0 6184 4564 816 176 0 14 chr12 3689319 3689461 -140096994 - AluJb SINE Alu -171 141 2 6693 224 88 63 chr12 3689461 3691267 -140095188 - L1ME2 LINE L1 -1620 4564 2466 555 272 15 0 chr12 3691279 3691415 -140095040 + MLT2F LTR ERVL 4 141 -522 227 260 0 0 chr12 3691593 3691643 -140094812 + L2 LINE L2 3202 3251 -21 629 248 63 71 chr12 3691651 3691889 -140094566 + MIR SINE MIR 1 236 -26 3427 85 9 9 chr12 3692057 3692517 -140093938 + LTR46 LTR ERV1 1 460 0 312 277 92 8 chr12 3693717 3693836 -140092619 + L3b LINE CR1 1279 1407 -176 202 274 219 0 chr12 3694928 3695001 -140091454 + MIR SINE MIR 4 92 -170 440 261 17 9 chr12 3695075 3695190 -140091265 + MIR SINE MIR 129 244 -18 401 268 114 8 chr12 3695367 3695490 -140090965 + MIR SINE MIR 124 259 -3 362 299 132 20 chr12 3696537 3696709 -140089746 + MIR SINE MIR 18 205 -57 988 250 76 0 chr12 3696709 3696933 -140089522 + MIR SINE MIR 1 241 -21 875 267 71 8 chr12 3697551 3697791 -140088664 + MIR SINE MIR 6 260 -2 607 348 41 41 chr12 3698967 3699435 -140087020 - L2 LINE L2 -556 2758 2291 647 290 61 71 chr12 3699454 3700158 -140086297 + L1ME4a LINE L1 5174 5873 -248 487 276 142 39 chr12 3701912 3702144 -140084311 - MIR SINE MIR -1 261 6 248 284 0 84 chr12 3702375 3702470 -140083985 - MIR SINE MIR -70 138 52 1277 97 121 5 chr12 3703403 3703609 -140082846 + MER30 DNA MER1_type 1 230 0 665 174 193 19 chr12 3704052 3704213 -140082242 + MER5A DNA MER1_type 1 189 0 261 202 53 53 chr12 3704270 3704316 -140082139 + MER103 DNA DNA 2 47 -119 2245 65 0 7 chr12 3704316 3704607 -140081848 - AluSx SINE Alu 0 312 24 261 202 53 53 chr12 3704607 3704654 -140081801 + MER103 DNA DNA 46 95 -71 204 118 39 20 chr12 3704662 3704713 -140081742 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 242 296 62 0 chr12 3704885 3704966 -140081489 + MER5A DNA MER1_type 73 158 -31 4826 259 69 30 chr12 3707575 3709393 -140077062 + L1MEc LINE L1 100 1989 -4407 1501 201 4 26 chr12 3709393 3709666 -140076789 + Tigger7 DNA MER2_type 1 267 -466 503 219 10 0 chr12 3709664 3709760 -140076695 + Tigger7 DNA MER2_type 2390 2486 -1 * 4018 194 67 25 chr12 3709761 3711108 -140075347 + L1MB3 LINE L1 1993 6251 -1 1932 139 3 0 chr12 3711722 3712017 -140074438 - AluSx SINE Alu -16 296 1 180 0 0 0 chr12 3712295 3712315 -140074140 + (T)n Simple_repeat Simple_repeat 1 20 0 213 227 27 40 chr12 3712668 3712743 -140073712 + T-rich Low_complexity Low_complexity 5 78 0 421 291 60 86 chr12 3712849 3713467 -140072988 - HERVI LTR ERV1 -763 5886 5285 250 326 132 19 chr12 3713562 3713887 -140072568 - HERVI LTR ERV1 -1501 6284 5923 233 29 29 0 chr12 3714145 3714179 -140072276 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1650 324 25 45 chr12 3714185 3714286 -140072169 - HERVI LTR ERV1 -2026 5759 5658 2060 83 49 0 chr12 3714286 3714574 -140071881 - AluSg1 SINE Alu -7 302 1 1650 324 25 45 chr12 3714574 3715363 -140071092 - HERVI LTR ERV1 -2127 5658 4855 2295 92 0 0 chr12 3715363 3715666 -140070789 - AluSq SINE Alu -10 303 1 1650 324 25 45 chr12 3715666 3716426 -140070029 - HERVI LTR ERV1 -2930 4855 3104 566 250 133 27 chr12 3716973 3717229 -140069226 + MER102a DNA MER1_type 45 327 -3 258 344 6 25 chr12 3717594 3717751 -140068704 + CT-rich Low_complexity Low_complexity 2 155 0 458 101 0 25 chr12 3717768 3717847 -140068608 - LTR18B LTR ERVL -270 344 268 462 159 0 0 chr12 3717900 3717969 -140068486 - LTR18B LTR ERVL -212 402 334 703 318 65 58 chr12 3717970 3718735 -140067720 - HERVI LTR ERV1 -5751 2034 1264 551 363 3 7 chr12 3718914 3719203 -140067252 - HERVI LTR ERV1 -6779 1006 719 256 202 144 29 chr12 3719384 3719488 -140066967 - HERVI LTR ERV1 -6347 302 187 191 88 29 0 chr12 3719913 3719947 -140066508 + (TTG)n Simple_repeat Simple_repeat 2 36 0 751 305 56 13 chr12 3720294 3720599 -140065856 + L2 LINE L2 2996 3313 0 282 116 0 0 chr12 3720599 3720642 -140065813 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 190 285 130 41 chr12 3721298 3721314 -140065141 + MER5A DNA MER1_type 5 31 -158 683 132 88 137 chr12 3721314 3721432 -140065023 - MER5A DNA MER1_type -2 187 80 1198 35 0 0 chr12 3721432 3721575 -140064880 - L1PA4 LINE L1 -3 6152 6010 683 132 88 137 chr12 3721575 3721638 -140064817 - MER5A DNA MER1_type -109 80 15 577 272 31 0 chr12 3721826 3721988 -140064467 + MIR SINE MIR 84 250 -12 213 298 0 0 chr12 3723942 3723999 -140062456 - MIR SINE MIR -118 90 34 180 111 0 0 chr12 3724152 3724179 -140062276 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 372 324 205 42 chr12 3724288 3724884 -140061571 - L2 LINE L2 -741 2573 1881 1372 139 0 17 chr12 3726402 3726639 -140059816 - L1MA5A LINE L1 -4 6293 6061 466 329 140 40 chr12 3727360 3728304 -140058151 - L2 LINE L2 -5 3267 2156 1264 125 0 0 chr12 3729019 3729211 -140057244 + AluSg/x SINE Alu 121 312 0 2471 56 0 0 chr12 3729537 3729843 -140056612 + AluY SINE Alu 1 306 -5 565 262 94 53 chr12 3730651 3730895 -140055560 - MIR SINE MIR 0 262 9 493 384 20 0 chr12 3731250 3731448 -140055007 + MIR SINE MIR 58 259 -3 480 157 22 11 chr12 3731636 3731725 -140054730 + MLT1C LTR MaLR 3 92 -375 44128 29 21 1 chr12 3731729 3737762 -140048693 + L1HS LINE L1 1 6155 0 28 0 0 0 chr12 3737770 3737798 -140048657 + AT_rich Low_complexity Low_complexity 1 28 0 1826 192 45 11 chr12 3737798 3738173 -140048282 + MLT1C LTR MaLR 80 467 0 443 324 7 14 chr12 3738647 3738789 -140047666 + MIR SINE MIR 8 148 -114 194 302 38 0 chr12 3739076 3739129 -140047326 + MIR3 SINE MIR 151 205 -3 335 325 165 34 chr12 3739451 3739688 -140046767 + L3b LINE CR1 1290 1557 -26 21 0 0 0 chr12 3740024 3740045 -140046410 + AT_rich Low_complexity Low_complexity 1 21 0 510 230 241 16 chr12 3740220 3740411 -140046044 - MIR SINE MIR 0 262 29 234 0 0 0 chr12 3740717 3740743 -140045712 + (A)n Simple_repeat Simple_repeat 1 26 0 410 298 0 15 chr12 3741421 3741552 -140044903 - L2 LINE L2 -212 3060 2932 305 288 144 0 chr12 3742011 3742164 -140044291 - MIR SINE MIR -6 256 82 413 206 56 86 chr12 3742469 3742638 -140043817 + MIR SINE MIR 37 196 -63 218 333 81 18 chr12 3742687 3742798 -140043657 + L2 LINE L2 3147 3264 -8 513 0 0 0 chr12 3745068 3745125 -140041330 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr12 3745643 3745664 -140040791 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 3745852 3745881 -140040574 + GC_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr12 3746237 3746282 -140040173 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 59 0 0 chr12 3747099 3747150 -140039305 + (TG)n Simple_repeat Simple_repeat 1 51 0 404 299 76 11 chr12 3747425 3747609 -140038846 - MIR3 SINE MIR -9 199 4 289 279 95 27 chr12 3747970 3748117 -140038338 + MLT1G1 LTR MaLR 439 595 0 184 214 0 48 chr12 3748135 3748177 -140038278 + L2 LINE L2 3259 3298 -15 187 330 0 23 chr12 3748267 3748355 -140038100 - L2 LINE L2 -1 3312 3227 218 254 55 0 chr12 3748603 3748658 -140037797 + MIR SINE MIR 195 252 -10 542 275 192 0 chr12 3748724 3748906 -140037549 - MIR SINE MIR -15 247 31 715 205 112 6 chr12 3748945 3749106 -140037349 - MER5B DNA MER1_type 0 178 1 264 368 97 26 chr12 3749309 3749464 -140036991 + L3 LINE CR1 1412 1577 0 24 0 0 0 chr12 3750657 3750681 -140035774 + AT_rich Low_complexity Low_complexity 1 24 0 371 299 50 86 chr12 3751111 3751449 -140035006 - L1MC4a LINE L1 -86 6035 5710 328 255 131 48 chr12 3752272 3752417 -140034038 + MIR SINE MIR 79 235 -27 486 268 22 29 chr12 3752491 3752629 -140033826 + MIR3 SINE MIR 5 141 -67 457 287 18 17 chr12 3753754 3753961 -140032494 - MIR SINE MIR -21 241 36 426 253 31 62 chr12 3753968 3754130 -140032325 + MIR SINE MIR 24 180 -82 310 250 43 11 chr12 3756292 3756384 -140030071 + MIR3 SINE MIR 6 100 -108 260 289 87 0 chr12 3756444 3756548 -140029907 + MIR3 SINE MIR 87 199 -9 653 82 10 0 chr12 3758619 3758716 -140027739 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 281 306 120 28 chr12 3759580 3759688 -140026767 + L2 LINE L2 3154 3271 -1 219 386 95 21 chr12 3760636 3760825 -140025630 - L3b LINE CR1 -92 1491 1289 432 326 81 52 chr12 3762056 3762498 -140023957 - L2 LINE L2 -1 3271 2817 411 294 79 1 chr12 3762587 3762734 -140023721 - MIR SINE MIR -61 147 35 651 343 55 75 chr12 3762767 3763999 -140022456 - L2 LINE L2 -505 2809 1603 610 276 86 17 chr12 3764293 3764525 -140021930 - MIR SINE MIR -2 260 13 213 121 0 0 chr12 3764566 3764599 -140021856 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1356 204 87 9 chr12 3767223 3767556 -140018899 - L1MB7 LINE L1 0 6184 5826 1931 244 84 16 chr12 3768376 3768949 -140017506 + MER90 LTR ERV1 3 614 0 2601 54 0 10 chr12 3769689 3770002 -140016453 - AluY SINE Alu -1 310 1 382 298 61 0 chr12 3770441 3770558 -140015897 - MIR SINE MIR -40 168 43 450 305 11 9 chr12 3770679 3770829 -140015626 - MIR3 SINE MIR -45 163 47 253 305 29 19 chr12 3771295 3771400 -140015055 + L2 LINE L2 2715 2820 -494 713 145 23 8 chr12 3771491 3771622 -140014833 - MER101 LTR ERV1 -4 470 338 33 25 0 0 chr12 3771622 3771662 -140014793 + AT_rich Low_complexity Low_complexity 1 40 0 380 152 42 0 chr12 3771662 3771827 -140014628 + (TA)n Simple_repeat Simple_repeat 1 172 0 2028 80 36 25 chr12 3771827 3772101 -140014354 - AluSp SINE Alu -22 291 15 993 157 141 0 chr12 3772109 3772294 -140014161 - MER101B LTR ERV1 -126 444 234 247 225 225 0 chr12 3772331 3772420 -140014035 + L2 LINE L2 3205 3313 0 809 183 26 26 chr12 3773198 3773351 -140013104 + FRAM SINE Alu 1 151 -25 209 252 233 48 chr12 3773392 3773495 -140012960 - MIR SINE MIR -139 123 2 365 107 165 29 chr12 3773728 3773820 -140012635 + MIR SINE MIR 58 154 -62 1383 177 90 3 chr12 3774315 3774615 -140011840 + LTR56 LTR ERV1 9 334 -111 734 94 9 0 chr12 3774617 3774723 -140011732 - L1PA13 LINE L1 -370 5791 5685 2311 113 21 0 chr12 3774723 3775056 -140011399 + L1PA13 LINE L1 5811 6153 -10 273 238 36 12 chr12 3775141 3775225 -140011230 + LTR23 LTR ERV1 352 437 0 545 238 67 47 chr12 3776172 3776365 -140010090 + MIR SINE MIR 8 204 -58 313 273 91 0 chr12 3776773 3776861 -140009594 + MIR3 SINE MIR 85 180 -28 2330 90 30 0 chr12 3778821 3779120 -140007335 + AluSc SINE Alu 1 308 -1 1888 157 10 7 chr12 3779349 3779649 -140006806 + AluJo SINE Alu 1 301 -11 234 0 0 0 chr12 3779867 3779893 -140006562 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 519 306 42 14 chr12 3780824 3781040 -140005415 - MIR SINE MIR -21 241 20 202 271 57 43 chr12 3781109 3781179 -140005276 + MIR SINE MIR 94 164 -98 412 127 0 0 chr12 3781691 3781754 -140004701 - LTR26 LTR ERV1 0 603 541 3028 169 37 2 chr12 3781760 3782321 -140004134 - LTR26 LTR ERV1 -22 581 1 285 29 0 0 chr12 3784607 3784641 -140001814 + (TG)n Simple_repeat Simple_repeat 2 35 0 1348 112 5 0 chr12 3784641 3784837 -140001618 - L1PA13 LINE L1 -16 6147 5951 756 238 28 6 chr12 3785564 3785745 -140000710 + MIR3 SINE MIR 23 207 -1 4674 189 75 6 chr12 3785861 3785902 -140000553 + Charlie1a DNA MER1_type 14 51 -2710 198 0 0 0 chr12 3785902 3785924 -140000531 + (G)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3785924 3786964 -139999491 + Charlie1a DNA MER1_type 51 1170 -285 6724 76 12 10 chr12 3786966 3788256 -139998199 + L1PA10 LINE L1 4890 6168 0 754 166 153 0 chr12 3788301 3788458 -139997997 + MER20 DNA MER1_type 33 213 -6 713 121 258 0 chr12 3788463 3788653 -139997802 + Charlie1a DNA MER1_type 1187 1425 -30 1881 143 0 40 chr12 3788655 3788955 -139997500 + AluJo SINE Alu 3 290 -22 460 226 34 85 chr12 3789380 3789557 -139996898 - L2 LINE L2 -220 3052 2885 278 111 44 0 chr12 3791463 3791508 -139994947 - MIR SINE MIR -33 229 183 1080 289 64 50 chr12 3793040 3793664 -139992791 - L2 LINE L2 -349 2965 2333 2154 102 0 0 chr12 3794001 3794286 -139992169 + AluSg SINE Alu 1 285 -25 508 306 81 61 chr12 3794604 3795172 -139991283 - L1 LINE L1 -2883 3263 2699 199 208 21 0 chr12 3795372 3795420 -139991035 - L2 LINE L2 -23 3249 3201 182 241 35 35 chr12 3795460 3795518 -139990937 - L2 LINE L2 -322 2991 2934 513 206 86 89 chr12 3795646 3795971 -139990484 - Charlie7 DNA MER1_type -97 2515 2192 1047 251 108 43 chr12 3796056 3796464 -139989991 - Charlie7 DNA MER1_type -2047 565 185 275 0 29 0 chr12 3796464 3796499 -139989956 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2024 86 0 14 chr12 3796499 3796779 -139989676 - AluSc SINE Alu -33 276 1 1047 251 108 43 chr12 3796779 3796852 -139989603 - Charlie7 DNA MER1_type -2426 186 52 271 294 101 25 chr12 3796887 3797006 -139989449 - MIR SINE MIR -64 144 17 393 282 84 35 chr12 3799050 3799252 -139987203 - MIR SINE MIR -17 245 34 261 0 0 0 chr12 3799306 3799335 -139987120 + (TA)n Simple_repeat Simple_repeat 2 30 0 1417 127 14 0 chr12 3799384 3799596 -139986859 + L1PA15 LINE L1 5948 6162 -3 336 340 19 31 chr12 3799611 3799773 -139986682 + L1MC4a LINE L1 5770 5929 -1879 182 37 37 0 chr12 3800462 3800489 -139985966 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2251 93 3 0 chr12 3801138 3801448 -139985007 + AluY SINE Alu 1 311 0 2197 97 0 0 chr12 3801689 3801989 -139984466 + AluSx SINE Alu 1 300 -12 2062 98 28 0 chr12 3803054 3803340 -139983115 + AluSx SINE Alu 1 294 -18 811 212 26 36 chr12 3803396 3803589 -139982866 + MIR SINE MIR 58 248 -14 537 320 65 7 chr12 3803729 3804004 -139982451 + L1ME LINE L1 5370 5660 -504 186 118 0 0 chr12 3804159 3804193 -139982262 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 363 320 120 16 chr12 3805098 3805407 -139981048 + L2 LINE L2 1729 2069 -1245 416 340 97 43 chr12 3805454 3805939 -139980516 + L2 LINE L2 2365 2875 -439 353 277 142 64 chr12 3805922 3806189 -139980266 + L2 LINE L2 2985 3272 0 * 197 263 105 0 chr12 3806421 3806497 -139979958 - MIR SINE MIR -56 206 123 1993 192 66 27 chr12 3806542 3806984 -139979471 + LTR2B LTR ERV1 32 490 0 33162 113 40 51 chr12 3806984 3814114 -139972341 + Harlequin LTR ERV1 1 6896 0 1763 204 54 36 chr12 3814114 3814324 -139972131 + LTR2 LTR ERV1 1 206 -243 228 67 0 0 chr12 3814324 3814354 -139972101 + (TTCTG)n Simple_repeat Simple_repeat 1 30 0 1763 204 54 36 chr12 3814354 3814584 -139971871 + LTR2 LTR ERV1 206 449 0 297 114 0 0 chr12 3814792 3814836 -139971619 - MIR SINE MIR -64 144 101 418 163 0 81 chr12 3816593 3816679 -139969776 - MIR SINE MIR -111 151 73 553 139 19 0 chr12 3816893 3817001 -139969454 + CT-rich Low_complexity Low_complexity 1 110 0 308 292 45 0 chr12 3817726 3817815 -139968640 + MIR SINE MIR 38 130 -78 1048 251 22 4 chr12 3818851 3819078 -139967377 - MIR SINE MIR 0 262 32 181 345 41 48 chr12 3820418 3820563 -139965892 - L2 LINE L2 -3 3310 3167 470 214 101 44 chr12 3821076 3821235 -139965220 + MIR3 SINE MIR 18 185 -23 3727 158 51 3 chr12 3821334 3821943 -139964512 + MER21B LTR ERV1 1 638 -225 438 263 135 13 chr12 3821943 3822124 -139964331 + LTR1 LTR ERV1 48 248 -568 668 203 29 37 chr12 3822175 3822345 -139964110 + LTR1B LTR ERV1 332 1216 -62 494 145 99 138 chr12 3822556 3822708 -139963747 + MER21B LTR ERV1 693 912 -19 384 248 70 16 chr12 3822819 3822948 -139963507 - L1ME4a LINE L1 -17 6104 5969 1275 131 29 5 chr12 3822960 3823166 -139963289 + MER2 DNA MER2_type 1 211 -134 925 199 25 0 chr12 3823205 3823366 -139963089 + Tigger3(Golem) DNA MER2_type 1 165 -2864 * 1141 113 0 0 chr12 3823355 3823514 -139962941 + Tigger3(Golem) DNA MER2_type 2175 2333 -696 1704 124 4 0 chr12 3823514 3823755 -139962700 - THE1B LTR MaLR 0 364 123 374 82 0 33 chr12 3823746 3823807 -139962648 + AluSq/x SINE Alu 81 139 -164 * 1019 98 0 0 chr12 3824045 3824177 -139962278 + AluSg SINE Alu 1 132 -178 648 149 79 0 chr12 3824180 3824294 -139962161 - THE1B LTR MaLR -252 123 1 3963 118 62 6 chr12 3824297 3824957 -139961498 + Tigger3(Golem) DNA MER2_type 2332 3028 -1 331 221 29 0 chr12 3824957 3825021 -139961434 + MER2 DNA MER2_type 280 345 0 991 183 213 39 chr12 3825026 3825387 -139961068 - MSTC LTR MaLR -4 424 1 2298 92 0 0 chr12 3826151 3826457 -139959998 + AluSg SINE Alu 1 306 -4 7116 200 40 21 chr12 3826978 3828425 -139958030 + L1M2a LINE L1 646 2121 -5043 1460 217 0 10 chr12 3828425 3828729 -139957726 + AluJb SINE Alu 5 305 -7 390 174 41 0 chr12 3828737 3828835 -139957620 + GA-rich Low_complexity Low_complexity 4 105 0 2886 174 14 86 chr12 3828845 3829637 -139956818 + L1M2a LINE L1 2096 2830 -4338 2961 85 0 0 chr12 3829637 3830012 -139956443 + THE1C LTR MaLR 1 375 0 9761 114 49 38 chr12 3830014 3831573 -139954882 + THE1C-int LTR MaLR 4 1580 0 2743 97 14 3 chr12 3831573 3831944 -139954511 + THE1C LTR MaLR 1 375 0 880 271 48 11 chr12 3831950 3832323 -139954132 + L1M2a LINE L1 3294 3680 -3487 697 212 28 79 chr12 3832326 3832562 -139953893 + L1ME3A LINE L1 5911 6129 -33 21 36 0 0 chr12 3832691 3832719 -139953736 + AT_rich Low_complexity Low_complexity 1 28 0 259 247 93 10 chr12 3832872 3832969 -139953486 + L1MC4 LINE L1 7929 8033 -9 2182 98 10 0 chr12 3833059 3833356 -139953099 - AluSx SINE Alu -8 304 5 272 237 64 103 chr12 3833371 3833465 -139952990 - L1ME LINE L1 -394 5727 5640 14265 134 14 13 chr12 3833465 3835788 -139950667 - L1PA11 LINE L1 0 6174 3839 2251 95 10 10 chr12 3835788 3836093 -139950362 - AluSp SINE Alu -8 305 1 14265 134 14 13 chr12 3836093 3836940 -139949515 - L1PA11 LINE L1 -2335 3839 2994 272 237 64 103 chr12 3836940 3837001 -139949454 - L1ME LINE L1 -481 5640 5578 43883 32 23 1 chr12 3838724 3844743 -139941712 + L1PA3 LINE L1 1 6151 -4 25 0 0 0 chr12 3844743 3844768 -139941687 + AT_rich Low_complexity Low_complexity 1 25 0 279 339 70 39 chr12 3844768 3845108 -139941347 + L2 LINE L2 2766 3114 -158 369 305 141 8 chr12 3845152 3845280 -139941175 - L2 LINE L2 -2 3270 3126 763 274 140 17 chr12 3845294 3845832 -139940623 + L2 LINE L2 2704 3313 0 394 264 33 33 chr12 3846038 3846159 -139940296 - L2 LINE L2 -4 3268 3148 723 257 45 10 chr12 3846256 3846458 -139939997 + MIR SINE MIR 12 220 -42 293 294 56 24 chr12 3847340 3847466 -139938989 + L2 LINE L2 3142 3271 -1 186 43 0 0 chr12 3847475 3847498 -139938957 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 450 246 59 0 chr12 3847636 3847754 -139938701 + MIR3 SINE MIR 53 177 -31 820 208 42 21 chr12 3848204 3848396 -139938059 + MIR SINE MIR 3 198 -64 1845 237 55 101 chr12 3848403 3849276 -139937179 + L1MC4 LINE L1 7210 8042 0 198 222 0 0 chr12 3849302 3849338 -139937117 + L2 LINE L2 3263 3298 -15 180 343 14 14 chr12 3849430 3849500 -139936955 + MIR SINE MIR 77 146 -116 244 384 34 34 chr12 3849804 3849950 -139936505 - L2 LINE L2 -8 3264 3119 2244 98 10 0 chr12 3849950 3850256 -139936199 + AluSg SINE Alu 1 309 -1 191 216 0 0 chr12 3850323 3850360 -139936095 + L2 LINE L2 3277 3313 0 255 103 0 0 chr12 3851007 3851046 -139935409 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 625 261 24 6 chr12 3851669 3851834 -139934621 + MIR SINE MIR 87 254 -8 524 246 25 0 chr12 3852032 3852158 -139934297 + MER20B DNA MER1_type 69 202 -17 414 188 145 0 chr12 3852206 3852323 -139934132 + MLT1L LTR MaLR 168 301 -314 437 295 39 19 chr12 3852396 3852552 -139933903 + MLT1L LTR MaLR 446 604 -11 5419 197 31 24 chr12 3852592 3853182 -139933273 + L1MD1 LINE L1 3872 4457 -1785 1884 147 68 34 chr12 3853182 3853535 -139932920 - MLT1A1 LTR MaLR 0 365 1 5419 197 31 24 chr12 3853535 3855311 -139931144 + L1MD1 LINE L1 4457 6240 -2 253 260 64 101 chr12 3856335 3856554 -139929901 + MLT1J LTR MaLR 99 309 -202 258 365 83 6 chr12 3857079 3857235 -139929220 - MIR SINE MIR -62 200 33 899 279 60 53 chr12 3857643 3858323 -139928132 - L2 LINE L2 0 3313 2630 320 277 50 10 chr12 3858397 3858498 -139927957 - MER91C DNA MER1_type 0 140 36 195 42 0 0 chr12 3858895 3858919 -139927536 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 709 70 0 0 chr12 3858921 3859007 -139927448 - L1PA10 LINE L1 -23 6145 6060 579 212 153 51 chr12 3859009 3859264 -139927191 - L2 LINE L2 -3 3310 3030 2307 94 31 22 chr12 3859984 3860303 -139926152 - THE1B LTR MaLR -42 322 1 299 304 123 0 chr12 3860399 3860537 -139925918 + MIR3 SINE MIR 47 201 -7 432 376 73 6 chr12 3861101 3861266 -139925189 - MER91A DNA MER1_type -5 191 16 334 352 39 66 chr12 3861822 3862078 -139924377 - L2 LINE L2 -189 3083 2835 306 0 0 0 chr12 3862142 3862176 -139924279 + (CCA)n Simple_repeat Simple_repeat 1 34 0 763 209 20 0 chr12 3862348 3862496 -139923959 - MER45A DNA AcHobo 0 178 28 1252 150 75 66 chr12 3863745 3864065 -139922390 - MER33 DNA MER1_type 0 324 2 742 299 66 71 chr12 3864167 3864619 -139921836 - L1MEc LINE L1 -3886 2510 2061 196 169 17 34 chr12 3864917 3864976 -139921479 + (TATG)n Simple_repeat Simple_repeat 4 61 0 317 291 91 43 chr12 3865014 3865268 -139921187 + L1ME4a LINE L1 5631 5896 -225 339 291 26 51 chr12 3865301 3865418 -139921037 + HAL1b LINE L1 1222 1335 -13 282 73 0 0 chr12 3866292 3866333 -139920122 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 411 167 0 0 chr12 3866345 3866417 -139920038 - FLAM SINE Alu -19 124 53 298 167 56 0 chr12 3866417 3866471 -139919984 + AluJ/FLAM SINE Alu 6 62 -240 315 0 0 0 chr12 3866887 3866922 -139919533 + (TG)n Simple_repeat Simple_repeat 1 35 0 201 237 0 0 chr12 3867357 3867395 -139919060 - MIR SINE MIR -58 150 113 550 248 0 16 chr12 3867831 3867956 -139918499 + MER3 DNA MER1_type 40 162 -47 1137 204 24 67 chr12 3867959 3868332 -139918123 + MER3 DNA MER1_type 2234 2590 0 277 191 15 73 chr12 3868856 3868924 -139917531 - LTR16A LTR ERVL -5 445 382 377 275 18 0 chr12 3869109 3869218 -139917237 - LTR16A LTR ERVL -101 349 239 22 56 0 0 chr12 3870927 3870963 -139915492 + GC_rich Low_complexity Low_complexity 1 36 0 236 301 82 56 chr12 3871897 3872093 -139914362 + MIR SINE MIR 12 212 -50 195 42 0 0 chr12 3872606 3872630 -139913825 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 1151 131 0 0 chr12 3872733 3872901 -139913554 - AluSq SINE Alu -145 168 1 265 280 60 20 chr12 3872975 3873075 -139913380 + MIR SINE MIR 43 146 -62 586 287 164 15 chr12 3873090 3873358 -139913097 + L2 LINE L2 3005 3312 -1 2375 58 7 10 chr12 3874282 3874591 -139911864 - AluY SINE Alu -3 308 1 404 311 26 1 chr12 3875102 3875257 -139911198 + MIR SINE MIR 3 169 -39 820 164 0 0 chr12 3876019 3876147 -139910308 + FLAM_C SINE Alu 1 128 -5 949 152 35 23 chr12 3876443 3876614 -139909841 - AluJb SINE Alu -9 303 131 2672 211 45 12 chr12 3876631 3877208 -139909247 - MER45B DNA AcHobo -444 596 1 720 173 36 36 chr12 3878194 3878362 -139908093 + MER58C DNA MER1_type 47 214 -1 409 295 29 0 chr12 3878430 3878535 -139907920 - MER5B DNA MER1_type -63 115 8 762 146 129 23 chr12 3878547 3878718 -139907737 + MER5A DNA MER1_type 1 189 0 201 146 122 0 chr12 3878869 3878910 -139907545 - MIR SINE MIR -67 141 96 822 262 59 5 chr12 3879301 3879522 -139906933 - MIR SINE MIR 0 262 30 270 259 133 49 chr12 3880052 3880195 -139906260 + MIR3 SINE MIR 24 178 -30 189 171 24 146 chr12 3880760 3880842 -139905613 + MIR3 SINE MIR 5 76 -132 182 286 65 26 chr12 3881542 3881619 -139904836 - MIR SINE MIR -115 147 68 327 113 0 0 chr12 3882420 3882473 -139903982 + L1MB4 LINE L1 6127 6179 -1 204 312 39 39 chr12 3882526 3882603 -139903852 + MIR3 SINE MIR 130 206 -2 377 212 80 80 chr12 3882908 3883059 -139903396 - MIR3 SINE MIR -55 153 3 210 352 33 22 chr12 3883574 3883665 -139902790 - L3b LINE CR1 -87 1496 1405 209 364 10 10 chr12 3883871 3883970 -139902485 - MER5A DNA MER1_type -6 183 85 224 302 105 0 chr12 3884044 3884130 -139902325 + MIR3 SINE MIR 3 97 -111 * 242 297 44 0 chr12 3884123 3884214 -139902241 + MIR SINE MIR 113 207 -55 518 271 0 0 chr12 3884226 3884359 -139902096 - MER94 DNA DNA -1 133 1 214 284 167 59 chr12 3884846 3885050 -139901405 - L2 LINE L2 0 3272 3047 38 98 0 0 chr12 3886091 3886213 -139900242 + AT_rich Low_complexity Low_complexity 1 122 0 311 216 22 97 chr12 3886275 3886409 -139900046 + L1MCa LINE L1 1995 2118 -4308 1222 160 0 0 chr12 3886784 3886972 -139899483 - MER5A DNA MER1_type 0 189 2 1494 115 0 37 chr12 3887919 3888162 -139898293 + AluJo SINE Alu 79 312 0 432 283 58 74 chr12 3888463 3888639 -139897816 + L1MC4a LINE L1 5764 5934 -1874 562 213 24 0 chr12 3888639 3888766 -139897689 + L1MD2 LINE L1 6215 6344 -15 432 283 58 74 chr12 3888766 3888900 -139897555 + L1MC4a LINE L1 5934 6069 -1739 1535 156 126 58 chr12 3889105 3889470 -139896985 + MLT1B LTR MaLR 1 390 0 418 227 273 0 chr12 3890834 3890962 -139895493 + MER5A DNA MER1_type 6 168 -21 186 398 17 0 chr12 3891293 3891411 -139895044 + L3b LINE CR1 1279 1398 -185 532 312 169 61 chr12 3891924 3892315 -139894140 - L3 LINE CR1 -18 1559 1127 318 50 0 0 chr12 3893141 3893181 -139893274 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 353 29 36 chr12 3894481 3894620 -139891835 + L3 LINE CR1 1365 1502 -75 1663 164 24 24 chr12 3894986 3895278 -139891177 + AluJo SINE Alu 1 292 -20 604 128 0 0 chr12 3895308 3895386 -139891069 + AluJb SINE Alu 213 290 -22 237 235 12 37 chr12 3895469 3895550 -139890905 + L1ME4a LINE L1 5938 6016 -105 203 336 55 36 chr12 3895623 3895720 -139890735 + L3b LINE CR1 1239 1340 -243 1421 114 59 9 chr12 3895720 3895939 -139890516 + MER30 DNA MER1_type 1 230 0 203 336 55 36 chr12 3895939 3895951 -139890504 + L3b LINE CR1 1340 1350 -233 345 312 19 18 chr12 3896850 3896985 -139889470 - MIR SINE MIR -63 145 10 343 284 74 0 chr12 3897151 3897246 -139889209 + MIR SINE MIR 34 135 -127 2024 120 42 0 chr12 3897488 3897772 -139888683 - AluSx SINE Alu -16 296 1 279 262 81 114 chr12 3897817 3897966 -139888489 - MIR SINE MIR -71 191 48 822 226 86 53 chr12 3898700 3898943 -139887512 + MIR SINE MIR 12 262 0 202 352 0 14 chr12 3898947 3899018 -139887437 + MIR SINE MIR 52 121 -87 249 293 114 8 chr12 3899037 3899160 -139887295 - MER5A DNA MER1_type 0 189 54 * 416 273 16 16 chr12 3899057 3899178 -139887277 + MER5A DNA MER1_type 43 163 -26 266 269 0 30 chr12 3899298 3899365 -139887090 + L2 LINE L2 3200 3264 -8 1216 257 65 24 chr12 3899782 3900618 -139885837 + L1MCc LINE L1 1138 2013 -4889 207 0 0 0 chr12 3901244 3901267 -139885188 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 368 173 25 0 chr12 3901409 3901490 -139884965 + GA-rich Low_complexity Low_complexity 2 84 0 543 259 129 24 chr12 3902388 3902558 -139883897 - MIR SINE MIR -28 234 47 379 263 11 0 chr12 3905000 3905095 -139881360 - MIR SINE MIR -17 245 150 318 180 16 0 chr12 3905095 3905156 -139881299 - MER8 DNA MER2_type 0 239 178 2048 156 83 22 chr12 3905163 3905420 -139881035 + Tigger2 DNA MER2_type 2284 2577 -141 2464 71 7 0 chr12 3905420 3905717 -139880738 - AluSq SINE Alu -14 299 1 2048 156 83 22 chr12 3905717 3905869 -139880586 + Tigger2 DNA MER2_type 2577 2718 0 234 195 0 0 chr12 3905878 3905919 -139880536 - MIR SINE MIR -123 139 99 528 322 79 9 chr12 3906125 3906352 -139880103 + MIR SINE MIR 19 261 -1 223 109 55 18 chr12 3907788 3907843 -139878612 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 238 269 75 0 chr12 3908075 3908142 -139878313 - MER91A DNA MER1_type -111 85 14 255 244 11 67 chr12 3908299 3908389 -139878066 - L2 LINE L2 -14 3258 3174 195 333 61 0 chr12 3909670 3909769 -139876686 - MIR SINE MIR -56 206 102 730 215 11 45 chr12 3910758 3910935 -139875520 + MER63A DNA MER1_type 40 210 0 455 291 58 54 chr12 3910958 3911181 -139875274 + L2 LINE L2 3090 3313 0 271 381 19 19 chr12 3911199 3911354 -139875101 + L3 LINE CR1 265 419 -1158 547 189 47 0 chr12 3911411 3911517 -139874938 + MER63 DNA MER1_type 1 737 -325 487 279 87 6 chr12 3911600 3911772 -139874683 - MIR SINE MIR -54 208 23 241 277 161 65 chr12 3911778 3911933 -139874522 + L3 LINE CR1 421 590 -987 279 300 69 64 chr12 3912030 3912263 -139874192 + L3 LINE CR1 782 1015 -562 330 357 60 0 chr12 3912545 3912727 -139873728 - MIR SINE MIR -5 257 65 2144 255 98 11 chr12 3913842 3914431 -139872024 + L1MC4 LINE L1 6448 6984 -1058 228 35 0 0 chr12 3914431 3914460 -139871995 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 * 621 91 0 27 chr12 3914459 3914569 -139871886 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 2144 255 98 11 chr12 3914460 3915180 -139871275 + L1MC4 LINE L1 6984 7899 -143 186 189 0 0 chr12 3915246 3915283 -139871172 + GA-rich Low_complexity Low_complexity 1 37 0 221 202 34 0 chr12 3915766 3915837 -139870618 + MIR SINE MIR 99 170 -62 1543 272 102 105 chr12 3916103 3918425 -139868030 + L2 LINE L2 967 3273 -40 228 67 0 0 chr12 3919453 3919483 -139866972 + (GGA)n Simple_repeat Simple_repeat 1 30 0 310 321 9 9 chr12 3919920 3920026 -139866429 - MIR SINE MIR -66 142 37 201 174 101 43 chr12 3921012 3921081 -139865374 + MIR SINE MIR 13 85 -177 302 274 5 59 chr12 3921184 3921262 -139865193 + CT-rich Low_complexity Low_complexity 1 82 -94 1971 101 4 0 chr12 3921262 3921519 -139864936 - AluSx SINE Alu -10 302 45 302 274 5 59 chr12 3921519 3921626 -139864829 + CT-rich Low_complexity Low_complexity 82 176 0 269 267 23 0 chr12 3921582 3921668 -139864787 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 * 189 147 0 0 chr12 3921684 3921718 -139864737 + (TC)n Simple_repeat Simple_repeat 1 34 0 880 228 28 26 chr12 3922897 3923124 -139863331 - MIR SINE MIR -20 242 18 2513 67 0 22 chr12 3923787 3924100 -139862355 + AluY SINE Alu 1 306 -5 360 0 0 0 chr12 3924151 3924191 -139862264 + (TG)n Simple_repeat Simple_repeat 2 41 0 514 271 183 12 chr12 3924286 3924537 -139861918 - MLT1L LTR MaLR -12 603 310 258 269 0 13 chr12 3924696 3924774 -139861681 - MLT1L LTR MaLR -538 77 1 2087 177 44 2 chr12 3926008 3926420 -139860035 - MLT1C LTR MaLR 0 467 39 1119 232 103 31 chr12 3927108 3927565 -139858890 - L1MC4a LINE L1 -1631 6177 5688 426 275 84 54 chr12 3927618 3927916 -139858539 + Charlie8 DNA MER1_type 140 446 -1971 319 365 39 11 chr12 3928157 3928335 -139858120 - MIR SINE MIR -78 184 2 2136 132 0 3 chr12 3928346 3928641 -139857814 - AluSc SINE Alu -15 294 1 268 260 13 26 chr12 3928887 3928964 -139857491 - L2 LINE L2 -2 3270 3195 183 140 80 40 chr12 3930103 3930153 -139856302 + MIR3 SINE MIR 109 160 -48 835 173 13 0 chr12 3930162 3930312 -139856143 - L1PA16 LINE L1 0 6166 6015 2464 81 3 0 chr12 3930890 3931188 -139855267 - AluSc SINE Alu -10 299 1 252 143 0 0 chr12 3931190 3931232 -139855223 + (T)n Simple_repeat Simple_repeat 1 42 0 498 180 10 0 chr12 3931636 3931736 -139854719 + MER20B DNA MER1_type 515 615 -168 576 108 12 0 chr12 3931736 3931819 -139854636 + U6 snRNA snRNA 1 84 -23 423 181 116 55 chr12 3931857 3932056 -139854399 + MER20B DNA MER1_type 573 783 0 355 246 66 72 chr12 3932254 3932421 -139854034 - MER5B DNA MER1_type -12 166 1 1129 216 144 29 chr12 3932443 3932870 -139853585 + MLT1D LTR MaLR 27 389 -1 304 333 29 9 chr12 3934859 3934964 -139851491 - L2 LINE L2 -32 3240 3134 555 299 45 0 chr12 3935060 3935217 -139851238 - MIR3 SINE MIR -32 176 13 316 240 240 24 chr12 3935646 3935771 -139850684 + MIR SINE MIR 81 232 -30 392 320 93 0 chr12 3935866 3936016 -139850439 - L2 LINE L2 -7 3265 3102 450 211 35 0 chr12 3936237 3936351 -139850104 - L1ME4a LINE L1 -48 6073 5956 869 171 94 29 chr12 3936461 3936631 -139849824 - AluJo SINE Alu -13 299 119 278 104 0 21 chr12 3936631 3936679 -139849776 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 987 120 0 0 chr12 3936679 3936812 -139849643 - AluJo SINE Alu -169 133 1 207 300 17 0 chr12 3936826 3936886 -139849569 + L2 LINE L2 3207 3267 -5 551 70 0 23 chr12 3937571 3937657 -139848798 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 * 988 91 28 11 chr12 3937650 3937681 -139848774 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 988 91 28 11 chr12 3937681 3937857 -139848598 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2278 125 0 3 chr12 3937915 3938228 -139848227 - AluSq SINE Alu -1 312 1 212 244 0 0 chr12 3938715 3938760 -139847695 - MIR SINE MIR -77 131 87 397 200 67 0 chr12 3939212 3939287 -139847168 - L2 LINE L2 -43 3270 3191 1287 185 68 16 chr12 3939289 3939597 -139846858 - MER33 DNA MER1_type 0 324 1 812 248 45 33 chr12 3939860 3940102 -139846353 - MIR SINE MIR 0 262 18 213 306 14 14 chr12 3940937 3941009 -139845446 + L2 LINE L2 2990 3061 -211 8388 117 20 21 chr12 3941091 3942393 -139844062 + HSMAR2 DNA Mariner 1 1300 -2 225 273 114 0 chr12 3942888 3942976 -139843479 + L2 LINE L2 3175 3272 0 231 197 145 34 chr12 3943352 3943469 -139842986 - L1ME4a LINE L1 -1 6120 5991 472 264 121 22 chr12 3943699 3943881 -139842574 + L2 LINE L2 3114 3313 0 2497 143 14 32 chr12 3945364 3945796 -139840659 + MSTA LTR MaLR 5 428 0 3287 165 34 0 chr12 3946257 3946814 -139839641 + MLT1A1-int LTR MaLR 1 576 -1159 1621 156 22 0 chr12 3946811 3947086 -139839369 + MLT1A1-int LTR MaLR 1448 1728 -7 * 1314 190 88 51 chr12 3947093 3947242 -139839213 + MLT1A1 LTR MaLR 1 143 -222 2295 97 0 0 chr12 3947242 3947551 -139838904 - AluSc SINE Alu 0 309 1 1314 190 88 51 chr12 3947551 3947753 -139838702 + MLT1A1 LTR MaLR 143 365 0 259 289 0 67 chr12 3948026 3948116 -139838339 + L1ME LINE L1 5562 5645 -476 327 264 71 36 chr12 3948119 3948259 -139838196 - MIR SINE MIR 0 262 118 2238 92 3 0 chr12 3948276 3948568 -139837887 - AluSx SINE Alu -19 293 1 702 273 55 45 chr12 3949265 3949339 -139837116 - LTR16A1 LTR ERVL 0 457 385 2300 39 0 3 chr12 3949339 3949648 -139836807 + AluY SINE Alu 1 308 0 702 273 55 45 chr12 3949648 3949880 -139836575 - LTR16A1 LTR ERVL -72 385 147 188 200 0 0 chr12 3950122 3950152 -139836303 + MIR SINE MIR 121 150 -112 385 261 33 26 chr12 3950687 3950840 -139835615 + L3b LINE CR1 1213 1366 -217 205 258 30 0 chr12 3951037 3951103 -139835352 + T-rich Low_complexity Low_complexity 1 68 0 1936 133 0 10 chr12 3951160 3951453 -139835002 + AluSx SINE Alu 1 290 -22 456 220 229 0 chr12 3951491 3951600 -139834855 - MIR SINE MIR -117 145 12 456 259 0 27 chr12 3952105 3952217 -139834238 - MER63 DNA MER1_type -85 751 17 501 229 66 0 chr12 3952234 3952356 -139834099 - MER21B LTR ERV1 -124 739 610 280 358 131 11 chr12 3952564 3952846 -139833609 + L3b LINE CR1 1218 1533 -50 7900 251 43 16 chr12 3953622 3954679 -139831776 - L1ME1 LINE L1 -106 6129 5102 2129 69 42 3 chr12 3954679 3954967 -139831488 + AluY SINE Alu 1 299 -12 7900 251 43 16 chr12 3954967 3957614 -139828841 - L1ME1 LINE L1 -1133 5102 2282 461 318 15 0 chr12 3957612 3957744 -139828711 - L1ME1 LINE L1 -6094 302 169 * 354 271 194 23 chr12 3957744 3957873 -139828582 + MER96 DNA MER1_type? 1 151 -24 473 274 86 0 chr12 3957874 3957991 -139828464 + MER96 DNA MER1_type? 49 175 0 594 215 14 28 chr12 3957991 3958135 -139828320 - L1ME1 LINE L1 -6220 176 35 225 340 104 0 chr12 3958237 3958343 -139828112 - L2 LINE L2 -1 3271 3155 230 211 53 53 chr12 3958491 3958548 -139827907 - MIR SINE MIR -84 124 68 204 227 68 91 chr12 3958656 3958744 -139827711 + L2 LINE L2 3169 3254 -18 237 65 0 0 chr12 3958746 3958777 -139827678 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 450 259 112 18 chr12 3958908 3959078 -139827377 + MIR SINE MIR 77 262 0 590 237 79 7 chr12 3959973 3960125 -139826330 - MIR3 SINE MIR -3 205 43 659 263 67 10 chr12 3960498 3960692 -139825763 + MIR SINE MIR 46 250 -12 252 271 101 62 chr12 3961427 3961556 -139824899 + MIR SINE MIR 24 157 -105 1717 188 18 3 chr12 3961814 3962150 -139824305 - MER58B DNA MER1_type 0 341 1 2677 138 30 0 chr12 3963827 3964232 -139822223 + L1PA13 LINE L1 1 417 -6370 1956 177 12 0 chr12 3964230 3964575 -139821880 + L1PA13 LINE L1 2276 2624 -4173 * 21204 163 27 9 chr12 3964577 3965527 -139820928 + L1PA13 LINE L1 423 1354 -5460 207 69 0 0 chr12 3965527 3965556 -139820899 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 21204 163 27 9 chr12 3965556 3970872 -139815583 + L1PA13 LINE L1 1354 6814 0 982 244 47 0 chr12 3971645 3971858 -139814597 + MER58A DNA MER1_type 2 224 0 347 311 89 6 chr12 3971904 3972084 -139814371 + MIR SINE MIR 47 241 -21 3579 150 18 8 chr12 3972149 3972777 -139813678 - L1MB3 LINE L1 -4 6179 5546 234 184 0 0 chr12 3972899 3972937 -139813518 + MER20 DNA MER1_type 16 53 -166 2431 136 191 28 chr12 3972960 3973488 -139812967 - LTR18B LTR ERVL 0 614 1 730 188 5 130 chr12 3973488 3973680 -139812775 + MER20 DNA MER1_type 48 215 -4 311 322 133 28 chr12 3974258 3974544 -139811911 - L2 LINE L2 0 3313 2998 1937 118 23 16 chr12 3974978 3975282 -139811173 + AluSg SINE Alu 1 306 -4 235 372 49 26 chr12 3975476 3975702 -139810753 + L3b LINE CR1 1219 1449 -134 248 256 78 22 chr12 3977148 3977238 -139809217 - MIR SINE MIR -16 246 152 634 212 75 126 chr12 3977281 3977536 -139808919 + MIR SINE MIR 17 258 -4 398 225 217 8 chr12 3980651 3980771 -139805684 + L3b LINE CR1 1211 1355 -228 1838 213 5 11 chr12 3981284 3981651 -139804804 - MLT1A1 LTR MaLR 0 365 1 246 62 0 0 chr12 3981932 3981964 -139804491 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 333 220 3 19 chr12 3982344 3982447 -139804008 - LTR16C LTR ERVL -52 438 301 884 169 0 7 chr12 3982568 3982710 -139803745 - MLT1A1 LTR MaLR -224 141 1 650 324 70 4 chr12 3984108 3984352 -139802103 + MIR SINE MIR 2 261 -1 557 312 0 87 chr12 3984805 3985023 -139801432 - MIR SINE MIR -29 233 35 933 219 64 27 chr12 3986080 3986299 -139800156 + MIR SINE MIR 36 262 0 397 196 54 0 chr12 3986429 3986522 -139799933 + MER5A DNA MER1_type 4 102 -87 403 280 15 45 chr12 3986574 3986706 -139799749 + MIR3 SINE MIR 31 158 -50 504 269 33 33 chr12 3987257 3987439 -139799016 + MIR3 SINE MIR 4 185 -23 201 278 28 14 chr12 3988841 3988913 -139797542 - MER5B DNA MER1_type -58 120 48 405 321 33 22 chr12 3989569 3989753 -139796702 - MER5A DNA MER1_type -3 186 1 265 252 222 30 chr12 3990803 3990938 -139795517 + MIR3 SINE MIR 38 198 -10 199 333 88 39 chr12 3991174 3991276 -139795179 + L3b LINE CR1 1477 1583 0 291 114 0 0 chr12 3991692 3991736 -139794719 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 259 24 82 chr12 3992443 3992528 -139793927 + MER5A DNA MER1_type 1 80 -109 * 612 299 70 14 chr12 3992495 3992709 -139793746 - MIR SINE MIR -5 257 32 2151 136 0 0 chr12 3993044 3993339 -139793116 - AluSx SINE Alu -17 295 1 195 286 238 32 chr12 3993374 3993500 -139792955 + L3 LINE CR1 535 686 -891 374 337 132 36 chr12 3993503 3993889 -139792566 + L1 LINE L1 2403 2825 -3321 1435 307 134 46 chr12 3993973 3994795 -139791660 + L3 LINE CR1 680 1573 -4 200 242 210 64 chr12 3995527 3995717 -139790738 - MIR SINE MIR 0 262 42 531 0 0 0 chr12 3997175 3997234 -139789221 + (TG)n Simple_repeat Simple_repeat 2 60 0 737 216 22 74 chr12 3998581 3998812 -139787643 + L2 LINE L2 3083 3301 -12 294 95 0 0 chr12 3998813 3998855 -139787600 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 215 340 117 10 chr12 4000100 4000203 -139786252 + MIR SINE MIR 7 120 -142 209 309 0 60 chr12 4001228 4001312 -139785143 - MIR3 SINE MIR -13 195 117 362 331 66 22 chr12 4003170 4003351 -139783104 + L3b LINE CR1 1185 1373 -210 269 315 46 0 chr12 4003902 4004010 -139782445 + MIR3 SINE MIR 89 201 -7 270 235 66 175 chr12 4004677 4004783 -139781672 - MIR SINE MIR -12 250 171 2417 82 0 7 chr12 4004783 4005077 -139781378 + AluSg SINE Alu 1 292 -18 270 235 66 175 chr12 4005077 4005153 -139781302 - MIR SINE MIR -91 171 88 188 184 20 0 chr12 4005237 4005286 -139781169 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 637 241 60 18 chr12 4006161 4006327 -139780128 - MIR3 SINE MIR -15 193 21 283 289 55 31 chr12 4006764 4006892 -139779563 - L1MC4a LINE L1 -1834 5974 5844 229 263 18 0 chr12 4007012 4007069 -139779386 - L3 LINE CR1 -1 1576 1519 358 172 0 23 chr12 4008176 4008263 -139778192 + CT-rich Low_complexity Low_complexity 3 87 0 294 271 104 21 chr12 4008294 4008390 -139778065 - L2 LINE L2 -1 3271 3168 266 0 0 29 chr12 4008795 4008830 -139777625 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2154 24 8 0 chr12 4008830 4009079 -139777376 - L1PA4 LINE L1 -10 6145 5895 220 365 44 25 chr12 4009853 4010012 -139776443 - MIR SINE MIR -64 198 37 459 264 208 6 chr12 4011002 4011161 -139775294 + MIR SINE MIR 15 205 -57 216 280 0 0 chr12 4011613 4011663 -139774792 + MIR SINE MIR 201 250 -12 198 316 18 0 chr12 4011751 4011808 -139774647 - L3 LINE CR1 -3 1574 1517 1194 241 89 51 chr12 4011995 4012443 -139774012 + L2 LINE L2 1474 1938 -1376 770 259 154 54 chr12 4012447 4013041 -139773414 + L2 LINE L2 2647 3313 0 189 74 0 0 chr12 4013043 4013070 -139773385 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 188 132 0 26 chr12 4013976 4014014 -139772441 + (TA)n Simple_repeat Simple_repeat 2 38 0 180 339 18 0 chr12 4014014 4014070 -139772385 - L3 LINE CR1 -4 1573 1517 775 53 59 6 chr12 4014130 4014299 -139772156 + (TA)n Simple_repeat Simple_repeat 1 178 0 306 104 0 42 chr12 4014311 4014359 -139772096 + L1MC4 LINE L1 6658 6703 -1339 1786 186 7 0 chr12 4015549 4015834 -139770621 + AluJo SINE Alu 1 287 -25 2384 96 0 0 chr12 4016699 4017000 -139769455 - AluSg SINE Alu -9 301 1 267 368 9 9 chr12 4017539 4017645 -139768810 - L2 LINE L2 0 3313 3208 512 286 19 26 chr12 4017663 4017817 -139768638 - L2 LINE L2 -6 3307 3155 192 179 0 0 chr12 4018567 4018606 -139767849 + (TG)n Simple_repeat Simple_repeat 2 40 0 270 321 16 0 chr12 4019067 4019163 -139767292 - MIR SINE MIR -87 121 40 339 301 72 57 chr12 4019210 4019368 -139767087 + L2 LINE L2 3100 3263 -50 186 103 0 0 chr12 4019368 4019397 -139767058 + (CAT)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 4019397 4019447 -139767008 + L2 LINE L2 3263 3311 -2 3402 86 55 6 chr12 4020157 4020645 -139765810 - LTR10D LTR ERV1 0 513 2 183 286 29 29 chr12 4020685 4020755 -139765700 - L2 LINE L2 -4 3268 3199 251 294 12 35 chr12 4021503 4021588 -139764867 - MIR SINE MIR -72 190 108 955 216 118 0 chr12 4021792 4022149 -139764306 + L1ME4a LINE L1 5526 5924 -197 1767 155 7 4 chr12 4022282 4022559 -139763896 + AluJo SINE Alu 25 302 -10 303 239 50 13 chr12 4025316 4025422 -139761033 - MIR SINE MIR -71 137 72 425 310 23 47 chr12 4025575 4025707 -139760748 + MIR3 SINE MIR 34 163 -45 2784 102 72 5 chr12 4025707 4026108 -139760347 - MSTA LTR MaLR 0 428 1 425 310 23 47 chr12 4026108 4026146 -139760309 + MIR3 SINE MIR 163 200 -8 185 315 0 19 chr12 4027349 4027403 -139759052 - L3 LINE CR1 -10 1567 1515 344 194 30 119 chr12 4027941 4028075 -139758380 - MIR3 SINE MIR -54 154 33 271 254 0 0 chr12 4028880 4028935 -139757520 + (TG)n Simple_repeat Simple_repeat 1 55 0 264 149 0 0 chr12 4029683 4029730 -139756725 + (TCC)n Simple_repeat Simple_repeat 1 47 0 917 131 12 0 chr12 4029810 4030064 -139756391 + GA-rich Low_complexity Low_complexity 1 257 0 504 287 14 14 chr12 4030080 4030223 -139756232 - MIR3 SINE MIR -63 145 3 348 236 0 0 chr12 4030789 4030861 -139755594 - L2 LINE L2 -39 3233 3162 457 179 0 13 chr12 4031472 4031550 -139754905 - L2 LINE L2 -43 3270 3194 224 379 0 0 chr12 4031614 4031680 -139754775 + L2 LINE L2 3121 3186 -86 189 282 128 81 chr12 4033015 4033164 -139753291 - MER5B DNA MER1_type -6 172 17 581 261 147 0 chr12 4033184 4033341 -139753114 - MER5A DNA MER1_type -1 188 9 472 224 7 92 chr12 4033750 4033902 -139752553 + L3b LINE CR1 1210 1348 -235 422 324 7 21 chr12 4034764 4034909 -139751546 - MIR3 SINE MIR -21 187 45 195 129 0 0 chr12 4035408 4035439 -139751016 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 309 25 0 chr12 4035670 4035751 -139750704 - MIR SINE MIR -86 122 40 2093 103 0 0 chr12 4036383 4036655 -139749800 - AluSg1 SINE Alu 0 309 38 181 214 24 0 chr12 4037027 4037069 -139749386 + L2 LINE L2 2949 2991 -322 187 229 0 0 chr12 4037468 4037503 -139748952 + MIR SINE MIR 111 145 -63 275 270 79 11 chr12 4039118 4039207 -139747248 - L3 LINE CR1 -113 1464 1370 1214 226 55 0 chr12 4039567 4039859 -139746596 + MER46C DNA MER2_type 8 315 -23 180 111 0 0 chr12 4039866 4039893 -139746562 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 212 303 50 40 chr12 4040583 4040682 -139745773 + MIR SINE MIR 64 163 -99 192 288 17 17 chr12 4041747 4041806 -139744649 - L2 LINE L2 0 3313 3255 189 229 167 111 chr12 4041915 4042059 -139744396 + MIR SINE MIR 65 216 -46 309 348 44 40 chr12 4042173 4042400 -139744055 - L2 LINE L2 -17 3255 3028 204 240 0 0 chr12 4043717 4043767 -139742688 + T-rich Low_complexity Low_complexity 2 51 0 228 292 73 21 chr12 4044357 4044453 -139742002 + MIR3 SINE MIR 81 181 -27 317 125 18 0 chr12 4044628 4044684 -139741771 + (TG)n Simple_repeat Simple_repeat 2 58 0 1478 186 78 0 chr12 4045058 4045164 -139741291 + AluJo SINE Alu 1 97 -215 468 0 0 0 chr12 4045164 4045216 -139741239 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 4045216 4045378 -139741077 + AluJo SINE Alu 97 290 -22 447 293 75 28 chr12 4045504 4045716 -139740739 + MIR SINE MIR 41 262 0 3029 253 40 32 chr12 4046680 4046821 -139739634 - L1M4c LINE L1 -3649 2733 2595 2393 86 0 7 chr12 4046821 4047123 -139739332 - AluSq SINE Alu -8 305 6 3029 253 40 32 chr12 4047123 4048679 -139737776 - L1M4c LINE L1 -3787 2595 916 213 250 211 0 chr12 4050146 4050222 -139736233 + L2 LINE L2 3148 3239 -33 245 267 102 51 chr12 4050688 4050864 -139735591 + MIR SINE MIR 76 260 -2 809 104 0 14 chr12 4051274 4051418 -139735037 + L1MB4 LINE L1 6039 6180 0 324 340 61 0 chr12 4052123 4052270 -139734185 + L3 LINE CR1 1287 1442 -135 211 269 0 30 chr12 4052484 4052551 -139733904 + CT-rich Low_complexity Low_complexity 3 67 0 257 313 0 0 chr12 4052814 4052878 -139733577 + C-rich Low_complexity Low_complexity 2 65 0 202 300 11 33 chr12 4053187 4053277 -139733178 - MIR SINE MIR -59 149 62 217 200 0 0 chr12 4053724 4053769 -139732686 + MER5B DNA MER1_type 5 49 -129 823 201 74 0 chr12 4053799 4053948 -139732507 + FRAM SINE Alu 1 152 -24 279 0 0 0 chr12 4054389 4054420 -139732035 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 147 33 52 chr12 4054659 4055027 -139731428 + MER46B DNA MER2_type 1 236 0 258 300 18 36 chr12 4056762 4056872 -139729583 - MIR3 SINE MIR 0 208 101 458 311 34 28 chr12 4056940 4057117 -139729338 - L2 LINE L2 0 3272 3095 639 252 24 16 chr12 4057275 4057466 -139728989 - MIR SINE MIR -51 157 5 393 270 38 44 chr12 4057900 4058059 -139728396 - MIR SINE MIR -71 191 34 436 327 116 33 chr12 4058747 4059273 -139727182 + L2 LINE L2 2709 3271 -1 350 293 86 9 chr12 4060618 4060734 -139725721 - MIR SINE MIR -113 149 25 180 111 0 0 chr12 4064309 4064336 -139722119 + (CA)n Simple_repeat Simple_repeat 1 27 0 190 313 71 18 chr12 4065080 4065192 -139721263 - L3b LINE CR1 -126 1457 1340 1502 160 91 29 chr12 4066381 4066656 -139719799 + AluJo SINE Alu 12 303 -9 303 309 70 91 chr12 4067009 4067239 -139719216 + L2 LINE L2 3030 3254 -18 394 301 160 14 chr12 4067442 4067661 -139718794 + L3 LINE CR1 1213 1463 -114 3515 143 23 77 chr12 4068062 4068274 -139718181 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 4068274 4068307 -139718148 + (TG)n Simple_repeat Simple_repeat 1 33 0 3515 143 23 77 chr12 4068307 4068878 -139717577 + L1MA9 LINE L1 5793 6312 0 658 256 117 9 chr12 4069150 4069380 -139717075 - MIR SINE MIR -6 256 2 545 243 75 17 chr12 4069380 4069553 -139716902 + MER5A DNA MER1_type 3 185 -4 1063 341 68 35 chr12 4069618 4070575 -139715880 - L2 LINE L2 -480 2834 1846 870 323 84 36 chr12 4070572 4071374 -139715081 - L2 LINE L2 -4 3309 2462 * 23 0 0 0 chr12 4071895 4071918 -139714537 + AT_rich Low_complexity Low_complexity 1 23 0 786 268 102 27 chr12 4072059 4072836 -139713619 + L1MDa LINE L1 1030 1934 -4448 369 333 32 38 chr12 4072853 4073091 -139713364 + MIR SINE MIR 20 256 -6 2354 89 7 0 chr12 4073307 4073598 -139712857 + AluSc SINE Alu 1 293 -16 227 297 10 69 chr12 4074050 4074151 -139712304 + MIR SINE MIR 20 114 -148 603 217 31 37 chr12 4074381 4074542 -139711913 + MIR SINE MIR 10 169 -93 227 203 57 51 chr12 4075150 4075268 -139711187 - MIR SINE MIR -43 219 102 320 247 37 0 chr12 4077239 4077320 -139709135 + MIR SINE MIR 83 166 -96 355 301 101 7 chr12 4078105 4078283 -139708172 + MIR SINE MIR 19 214 -48 529 110 11 0 chr12 4078530 4078621 -139707834 + L1MB3 LINE L1 6088 6179 -4 2287 119 0 19 chr12 4079145 4079510 -139706945 + AluSp SINE Alu 1 313 0 1119 130 22 11 chr12 4079836 4080021 -139706434 + MLT1A2 LTR MaLR 1 187 -187 206 129 14 57 chr12 4080022 4080092 -139706363 + CT-rich Low_complexity Low_complexity 1 67 0 700 208 126 1 chr12 4080094 4080267 -139706188 + MLT1B LTR MaLR 163 382 -8 700 232 29 77 chr12 4080779 4080986 -139705469 + MIR SINE MIR 18 214 -48 813 275 9 13 chr12 4082630 4082859 -139703596 + MIR SINE MIR 2 229 -33 392 243 29 0 chr12 4082887 4082990 -139703465 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4083418 4083445 -139703010 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4083449 4083501 -139702954 + (TG)n Simple_repeat Simple_repeat 2 54 0 2264 120 7 0 chr12 4083579 4083888 -139702567 - AluSq SINE Alu -2 311 1 256 313 120 0 chr12 4083959 4084113 -139702342 + MIR SINE MIR 21 197 -11 708 246 33 6 chr12 4084724 4084907 -139701548 + MIR SINE MIR 48 235 -27 180 215 183 21 chr12 4085740 4085833 -139700622 - L3 LINE CR1 -190 1387 1280 537 110 0 0 chr12 4085964 4086055 -139700400 + (CA)n Simple_repeat Simple_repeat 1 91 0 546 154 0 45 chr12 4086300 4086410 -139700045 + MIR3 SINE MIR 74 179 -29 29 0 0 0 chr12 4086615 4086644 -139699811 + GC_rich Low_complexity Low_complexity 1 29 0 351 289 111 32 chr12 4087379 4087569 -139698886 + L2 LINE L2 2864 3068 -204 358 206 10 69 chr12 4087946 4088048 -139698407 - MIR3 SINE MIR -10 198 103 602 285 94 8 chr12 4088175 4088410 -139698045 + MIR SINE MIR 7 261 -1 201 275 0 29 chr12 4088853 4088922 -139697533 - MIR SINE MIR -119 143 77 233 233 0 0 chr12 4089060 4089103 -139697352 + MER45A DNA AcHobo 1 43 -135 1275 81 0 71 chr12 4089104 4089302 -139697153 - MER1B DNA MER1_type 0 339 156 258 141 14 141 chr12 4089278 4089349 -139697106 - MER1B DNA MER1_type -275 62 1 * 563 263 8 8 chr12 4089354 4089487 -139696968 + MER45A DNA AcHobo 43 175 -3 218 295 114 0 chr12 4091467 4091572 -139694883 - MIR3 SINE MIR -22 186 70 2751 95 28 8 chr12 4092216 4092573 -139693882 - THE1B LTR MaLR 0 364 1 565 310 0 11 chr12 4092891 4093065 -139693390 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4093072 4093119 -139693336 + GA-rich Low_complexity Low_complexity 4 49 0 408 111 0 123 chr12 4093143 4093224 -139693231 + AluJo SINE Alu 81 151 -161 2279 113 147 26 chr12 4093224 4093391 -139693064 + MSTA LTR MaLR 1 147 -281 2722 87 20 0 chr12 4093391 4093736 -139692719 + THE1A LTR MaLR 1 352 -3 2279 113 147 26 chr12 4093736 4093950 -139692505 + MSTA LTR MaLR 147 428 0 582 148 0 0 chr12 4093961 4094049 -139692406 + AluJ/FRAM SINE Alu 220 307 -5 329 209 14 0 chr12 4094049 4094189 -139692266 + GA-rich Low_complexity Low_complexity 1 142 0 323 314 71 40 chr12 4094590 4094816 -139691639 + L1ME1 LINE L1 11 243 -6616 262 289 37 23 chr12 4095197 4095396 -139691059 + L1M4b LINE L1 1035 1345 -5602 2392 97 0 0 chr12 4095408 4095707 -139690748 + AluSg SINE Alu 1 299 -11 2178 123 0 16 chr12 4095710 4096026 -139690429 + AluY SINE Alu 1 311 0 1172 252 62 18 chr12 4096039 4096440 -139690015 + L1M4b LINE L1 1209 1627 -5232 1865 256 46 49 chr12 4096447 4097291 -139689164 + L1M4b LINE L1 2273 3114 -4024 2217 238 30 30 chr12 4097363 4097969 -139688486 + L1ME1 LINE L1 394 999 -5439 339 267 57 0 chr12 4097975 4098080 -139688375 + L1MCb LINE L1 1425 1535 -5324 279 189 0 0 chr12 4098082 4098135 -139688320 + L1ME1 LINE L1 1008 1060 -5378 2045 178 37 32 chr12 4098136 4098682 -139687773 - MLT2A2 LTR ERVL 0 554 1 3365 189 53 22 chr12 4098686 4098766 -139687689 + L1ME1 LINE L1 1064 1140 -5787 2459 67 0 0 chr12 4098766 4099063 -139687392 + AluY SINE Alu 1 297 -14 3365 189 53 22 chr12 4099063 4099966 -139686489 + L1ME1 LINE L1 1140 2075 -4852 316 75 0 0 chr12 4099966 4100006 -139686449 - MLT2B1 LTR ERVL -2 518 479 396 0 0 0 chr12 4100006 4100050 -139686405 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4100059 4100225 -139686230 + CT-rich Low_complexity Low_complexity 1 162 0 1892 208 88 14 chr12 4100318 4100736 -139685719 - MLT2B1 LTR ERVL -71 449 1 1777 198 275 15 chr12 4100747 4100946 -139685509 + L1ME1 LINE L1 2099 2245 -4712 2622 55 0 0 chr12 4100946 4101256 -139685199 - AluY SINE Alu -1 310 1 1777 198 275 15 chr12 4101256 4101743 -139684712 + L1ME1 LINE L1 2245 2964 -3993 1348 161 5 0 chr12 4101793 4102004 -139684451 + AluSp SINE Alu 1 212 -101 372 109 0 0 chr12 4102004 4102059 -139684396 + AluSp SINE Alu 78 132 -171 2418 80 3 0 chr12 4102061 4102360 -139684095 + AluSp SINE Alu 1 300 -13 3201 210 50 21 chr12 4102363 4103287 -139683168 + L1ME1 LINE L1 2968 3919 -3038 3109 245 41 28 chr12 4103290 4104196 -139682259 + L1ME1 LINE L1 5302 6195 -950 2483 68 0 0 chr12 4104196 4104488 -139681967 + AluY SINE Alu 1 292 -19 3109 245 41 28 chr12 4104488 4104936 -139681519 + L1ME1 LINE L1 6195 6636 -509 2302 71 3 17 chr12 4104936 4105233 -139681222 + AluY SINE Alu 1 293 -18 3109 245 41 28 chr12 4105233 4105525 -139680930 + L1ME1 LINE L1 6636 7145 0 472 267 103 51 chr12 4106410 4106702 -139679753 - L2 LINE L2 -2 3311 3005 2296 66 10 30 chr12 4107851 4108155 -139678300 + AluY SINE Alu 1 298 -13 1969 112 52 75 chr12 4108370 4108585 -139677870 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4108585 4108608 -139677847 + (TC)n Simple_repeat Simple_repeat 1 23 0 1969 112 52 75 chr12 4108608 4108776 -139677679 + THE1C LTR MaLR 205 375 0 1110 268 224 30 chr12 4109497 4110507 -139675948 - L2 LINE L2 -38 3275 2075 339 343 62 19 chr12 4110520 4110730 -139675725 + L2 LINE L2 2661 2879 -435 211 363 97 8 chr12 4110708 4110832 -139675623 + L2 LINE L2 3089 3223 -49 * 373 130 0 26 chr12 4110851 4110928 -139675527 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4112053 4112078 -139674377 + AT_rich Low_complexity Low_complexity 1 25 0 1505 209 20 29 chr12 4112121 4112470 -139673985 - L1ME2 LINE L1 -28 6136 5791 3090 213 83 18 chr12 4112476 4113236 -139673219 - L1ME1 LINE L1 -35 6200 5392 848 60 0 0 chr12 4113255 4113355 -139673100 + AluSg SINE Alu 1 100 -210 2247 112 0 3 chr12 4113403 4113706 -139672749 + AluSg SINE Alu 1 302 -8 7385 216 93 89 chr12 4113706 4114461 -139671994 - L1ME1 LINE L1 -846 5369 4619 1109 184 44 0 chr12 4114461 4114667 -139671788 - AluJb SINE Alu -14 298 84 7385 216 93 89 chr12 4114667 4115348 -139671107 - L1ME1 LINE L1 -1596 4619 3943 2586 113 88 10 chr12 4115348 4115745 -139670710 + MSTA LTR MaLR 1 428 0 7385 216 93 89 chr12 4115745 4115956 -139670499 - L1ME1 LINE L1 -2272 3943 3734 2262 103 3 19 chr12 4115956 4116266 -139670189 - AluSx SINE Alu -7 305 1 7385 216 93 89 chr12 4116266 4116703 -139669752 - L1ME1 LINE L1 -2481 3734 3300 2259 99 6 13 chr12 4116703 4117015 -139669440 - AluSq SINE Alu -3 310 1 7385 216 93 89 chr12 4117015 4117099 -139669356 - L1ME1 LINE L1 -2915 3300 3218 666 216 0 43 chr12 4117099 4117260 -139669195 - FLAM_A SINE Alu 0 133 1 7385 216 93 89 chr12 4117260 4118443 -139668012 - L1ME1 LINE L1 -2997 3218 1853 2463 72 7 3 chr12 4118443 4118750 -139667705 - AluY SINE Alu -3 308 1 7385 216 93 89 chr12 4118750 4118966 -139667489 - L1ME1 LINE L1 -4362 1853 1639 4976 139 57 4 chr12 4118958 4119987 -139666468 - L1MB1 LINE L1 0 6168 5086 * 9398 74 21 4 chr12 4119988 4121247 -139665208 - L1PA7 LINE L1 -897 5249 3969 7452 49 2 24 chr12 4121247 4122161 -139664294 + L1PA7 LINE L1 5260 6154 0 3745 188 57 6 chr12 4122161 4122954 -139663501 - L1MB1 LINE L1 -1054 5092 4260 510 301 0 7 chr12 4123301 4123444 -139663011 - L1ME1 LINE L1 -6120 276 135 1746 141 44 0 chr12 4123539 4123809 -139662646 - MSTB LTR MaLR -144 282 1 210 220 160 0 chr12 4123813 4123863 -139662592 - MIR SINE MIR -200 62 5 736 238 114 5 chr12 4125001 4125203 -139661252 + LTR50 LTR ERVL 1 224 -571 570 257 153 8 chr12 4125356 4125605 -139660850 + LTR50 LTR ERVL 503 787 -8 347 196 244 11 chr12 4125725 4125854 -139660601 + MIR SINE MIR 2 159 -49 413 197 0 0 chr12 4125856 4125932 -139660523 + MER53 DNA DNA 33 108 -81 2192 82 0 4 chr12 4126000 4126279 -139660176 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4126890 4126921 -139659534 + (CA)n Simple_repeat Simple_repeat 2 32 0 468 252 98 28 chr12 4128168 4128311 -139658144 - MIR SINE MIR -21 241 89 237 250 0 18 chr12 4128314 4128370 -139658085 - tRNA-Gln-CAG tRNA tRNA -15 60 6 2512 81 0 0 chr12 4128436 4128746 -139657709 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4130056 4130095 -139656360 - L3 LINE CR1 -11 1566 1528 258 290 0 0 chr12 4130186 4130248 -139656207 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4130433 4130659 -139655796 - L3b LINE CR1 -123 1460 1227 1863 227 68 36 chr12 4131087 4131615 -139654840 + MER74B LTR ERVL 56 600 -22 826 190 231 93 chr12 4131622 4131943 -139654512 - MLT1A1 LTR MaLR 0 365 1 442 206 19 0 chr12 4132740 4132834 -139653621 + MLT1A2 LTR MaLR 1 103 -262 * 655 152 62 0 chr12 4132831 4132943 -139653512 + MLT1A2 LTR MaLR 256 374 0 376 314 16 0 chr12 4133195 4133319 -139653136 + L3 LINE CR1 691 816 -761 476 247 88 0 chr12 4133379 4133549 -139652906 - L1ME4a LINE L1 -215 5906 5722 368 338 186 18 chr12 4133591 4134032 -139652423 + L3 LINE CR1 802 1316 -261 315 313 35 76 chr12 4134198 4134396 -139652059 + L2 LINE L2 2085 2274 -1040 412 303 123 59 chr12 4134463 4134885 -139651570 - MLT1K LTR MaLR -3 585 137 313 315 49 120 chr12 4135248 4135680 -139650775 + L2 LINE L2 2862 3262 -10 330 298 172 40 chr12 4136421 4136619 -139649836 - MIR SINE MIR -18 244 21 311 306 144 39 chr12 4137411 4137640 -139648815 + L3b LINE CR1 1304 1556 -27 2501 61 7 3 chr12 4138071 4138381 -139648074 + AluY SINE Alu 1 311 0 238 311 185 0 chr12 4138385 4138520 -139647935 + L3 LINE CR1 1345 1504 -73 276 296 144 24 chr12 4138558 4138683 -139647772 + L2 LINE L2 3133 3272 0 2437 226 42 4 chr12 4138742 4139295 -139647160 + MER90 LTR ERV1 1 574 -1 1017 223 34 13 chr12 4139426 4139659 -139646796 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4140030 4140261 -139646194 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4140569 4140639 -139645816 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4143961 4144271 -139642184 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4144271 4144352 -139642103 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4144352 4144528 -139641927 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4144560 4144666 -139641789 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4146131 4146258 -139640197 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4146452 4146758 -139639697 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4148297 4148365 -139638090 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4148815 4148843 -139637612 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4148880 4149464 -139636991 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4149878 4150266 -139636189 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4150375 4150563 -139635892 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4150563 4150857 -139635598 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4151475 4151624 -139634831 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4151651 4153007 -139633448 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4153023 4153229 -139633226 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4153229 4153406 -139633049 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4153462 4153635 -139632820 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4153796 4153876 -139632579 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4154636 4154817 -139631638 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4155970 4156271 -139630184 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4157006 4157125 -139629330 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4157125 4157190 -139629265 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4157191 4157287 -139629168 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4157287 4157585 -139628870 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4157585 4157885 -139628570 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4159384 4159682 -139626773 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4161920 4162224 -139624231 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4163012 4163238 -139623217 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4164300 4164529 -139621926 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4165094 4165257 -139621198 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4166971 4167260 -139619195 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4167280 4168004 -139618451 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4168004 4168318 -139618137 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4168318 4168444 -139618011 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4168677 4168740 -139617715 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4168953 4170154 -139616301 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4170279 4171024 -139615431 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4171051 4171701 -139614754 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4171701 4171725 -139614730 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4171725 4172395 -139614060 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4172806 4172837 -139613618 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4179930 4180132 -139606323 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4180132 4180440 -139606015 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4180440 4180460 -139605995 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4180460 4180760 -139605695 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4180760 4183612 -139602843 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4183613 4183657 -139602798 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4183957 4184784 -139601671 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4184795 4190932 -139595523 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4190940 4192457 -139593998 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4192461 4192771 -139593684 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4192771 4192899 -139593556 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4192904 4192937 -139593518 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4192937 4193231 -139593224 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4193231 4193577 -139592878 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4193576 4194307 -139592148 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4194307 4194621 -139591834 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4194621 4194864 -139591591 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4194875 4195012 -139591443 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4195017 4195396 -139591059 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4195396 4195675 -139590780 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4195691 4195774 -139590681 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4195799 4196115 -139590340 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4196125 4196205 -139590250 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4196209 4196265 -139590190 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4196265 4197148 -139589307 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4197148 4197727 -139588728 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4197735 4199662 -139586793 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4199798 4200045 -139586410 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4201832 4202098 -139584357 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4202098 4202481 -139583974 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4202482 4202956 -139583499 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4202975 4203560 -139582895 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4203577 4203806 -139582649 - Tigger7 DNA MER2_type -2240 247 22 567 242 8 8 chr12 4204272 4204400 -139582055 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4204945 4205267 -139581188 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4205421 4206095 -139580360 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4206470 4206600 -139579855 + AluSg/x SINE Alu 174 303 -9 309 248 239 0 chr12 4207358 4207471 -139578984 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4207915 4208214 -139578241 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4208519 4208564 -139577891 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4208823 4209026 -139577429 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4209160 4209456 -139576999 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4209487 4209853 -139576602 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4210323 4210390 -139576065 + Charlie8 DNA MER1_type 183 255 -2162 511 188 21 0 chr12 4210599 4210695 -139575760 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4210694 4210733 -139575722 - Tigger7 DNA MER2_type -2221 266 231 14796 122 19 30 chr12 4210733 4210953 -139575502 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4210953 4211245 -139575210 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4211245 4212603 -139573852 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4212603 4212913 -139573542 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4212913 4213776 -139572679 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4213776 4213982 -139572473 - Tigger7 DNA MER2_type -2256 231 3 1693 156 69 39 chr12 4213990 4214323 -139572132 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4215818 4216245 -139570210 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4216246 4216279 -139570176 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4216278 4216326 -139570129 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4216441 4216654 -139569801 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4217137 4217223 -139569232 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4217494 4217791 -139568664 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4217885 4217969 -139568486 - AluSg/x SINE Alu -15 287 203 453 220 0 0 chr12 4218192 4218310 -139568145 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4218316 4218624 -139567831 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4218625 4218707 -139567748 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4218753 4218888 -139567567 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4218888 4218913 -139567542 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4220057 4220365 -139566090 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4220448 4220533 -139565922 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4220644 4220799 -139565656 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4220864 4220923 -139565532 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4221779 4221818 -139564637 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4221938 4221982 -139564473 + A-rich Low_complexity Low_complexity 2 48 0 635 128 220 0 chr12 4222351 4222460 -139563995 - FLAM_C SINE Alu 0 133 1 1517 166 31 0 chr12 4222631 4222913 -139563542 - AluJo SINE Alu 0 312 35 1044 314 194 16 chr12 4222913 4223613 -139562842 - L3 LINE CR1 -11 1566 742 686 290 21 29 chr12 4223612 4223850 -139562605 + MIR SINE MIR 27 262 0 * 810 300 67 122 chr12 4223865 4224622 -139561833 - L3 LINE CR1 -835 742 27 502 299 19 7 chr12 4224643 4224797 -139561658 + MIR3 SINE MIR 49 204 -4 298 85 0 51 chr12 4225235 4225294 -139561161 - Alu SINE Alu 0 301 246 2246 99 0 0 chr12 4225326 4225628 -139560827 - AluY SINE Alu -9 302 1 281 304 32 70 chr12 4226564 4226662 -139559793 - L2 LINE L2 0 3313 3213 2267 89 10 23 chr12 4226662 4226966 -139559489 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4226966 4226993 -139559462 + (TA)n Simple_repeat Simple_repeat 1 27 0 408 20 0 0 chr12 4226992 4227041 -139559414 + (GA)n Simple_repeat Simple_repeat 2 50 0 281 304 32 70 chr12 4226993 4227099 -139559356 - L2 LINE L2 -98 3215 3162 192 314 35 0 chr12 4228001 4228087 -139558368 - MIR SINE MIR -102 160 72 182 283 92 106 chr12 4228721 4229041 -139557414 + L2 LINE L2 1798 2121 -1193 549 55 0 0 chr12 4229041 4229114 -139557341 + (TC)n Simple_repeat Simple_repeat 1 73 0 182 283 92 106 chr12 4229114 4229284 -139557171 + L2 LINE L2 2121 2284 -1030 1750 176 3 3 chr12 4229284 4229603 -139556852 - AluJo SINE Alu 0 319 1 182 283 92 106 chr12 4229603 4229641 -139556814 + L2 LINE L2 2284 2321 -993 3320 275 87 38 chr12 4229785 4231563 -139554892 + L2 LINE L2 1455 3313 0 182 393 0 0 chr12 4231703 4231759 -139554696 - MIR3 SINE MIR -138 70 15 278 208 78 0 chr12 4232198 4232275 -139554180 - MER102b DNA MER1_type -8 333 251 367 319 22 0 chr12 4232336 4232474 -139553981 - MER102b DNA MER1_type -184 157 17 289 307 146 15 chr12 4232516 4232653 -139553802 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4232888 4232929 -139553526 + T-rich Low_complexity Low_complexity 2 43 0 1462 350 85 20 chr12 4233465 4234413 -139552042 + L3 LINE CR1 31 1040 -537 601 278 97 17 chr12 4234504 4234853 -139551602 - L1ME4a LINE L1 -17 6087 5711 1526 289 40 13 chr12 4234873 4235350 -139551105 + L3 LINE CR1 1088 1577 0 341 310 9 26 chr12 4235529 4235645 -139550810 - MIR SINE MIR -50 212 99 182 333 33 33 chr12 4235875 4235965 -139550490 + L2 LINE L2 2690 2779 -535 362 307 82 23 chr12 4236287 4236593 -139549862 - L1ME4a LINE L1 -1299 4830 4507 720 286 54 0 chr12 4236872 4237113 -139549342 + MLT1L LTR MaLR 362 615 0 288 303 116 25 chr12 4237207 4237448 -139549007 - L1ME4a LINE L1 -1786 4343 4081 224 97 0 0 chr12 4237509 4237540 -139548915 + MER91B DNA MER1_type 33 63 -127 524 225 71 50 chr12 4237604 4237786 -139548669 - MLT1J LTR MaLR 0 511 326 761 291 77 44 chr12 4237905 4238506 -139547949 - L1ME4a LINE L1 -2682 3447 2821 902 142 103 0 chr12 4238538 4238693 -139547762 + AluSg/x SINE Alu 136 306 -6 265 309 42 27 chr12 4238970 4239306 -139547149 - L1ME4a LINE L1 -3649 2480 2140 1426 178 94 22 chr12 4239329 4239649 -139546806 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4239821 4240114 -139546341 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4240289 4240581 -139545874 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4240840 4241192 -139545263 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4241228 4241688 -139544767 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4242413 4242459 -139543996 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4242461 4242740 -139543715 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4242743 4242873 -139543582 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4243006 4243035 -139543420 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4243397 4243524 -139542931 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4243893 4244196 -139542259 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4245465 4245809 -139540646 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4245943 4246214 -139540241 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4246767 4247074 -139539381 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4247774 4248142 -139538313 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4248178 4248257 -139538198 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4248818 4248978 -139537477 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4248978 4249120 -139537335 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4249196 4249497 -139536958 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4250422 4250446 -139536009 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4250446 4250722 -139535733 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4250850 4250872 -139535583 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4250888 4251132 -139535323 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4251259 4251378 -139535077 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4251542 4251672 -139534783 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4251941 4252250 -139534205 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4252351 4252546 -139533909 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4252558 4252920 -139533535 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4252967 4253165 -139533290 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4253613 4253916 -139532539 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4254011 4254161 -139532294 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4254368 4254401 -139532054 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4255993 4256017 -139530438 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4256020 4256057 -139530398 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4257541 4257628 -139528827 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4258182 4258287 -139528168 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4258353 4258450 -139528005 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4258471 4258517 -139527938 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4258841 4258950 -139527505 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4258963 4259020 -139527435 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4259943 4259976 -139526479 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4261376 4261519 -139524936 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4261667 4261726 -139524729 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4262479 4263070 -139523385 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4263315 4263512 -139522943 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4263988 4264329 -139522126 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4264968 4264995 -139521460 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4266316 4266388 -139520067 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4268827 4268908 -139517547 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4268939 4268989 -139517466 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4269213 4269424 -139517031 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4269591 4270654 -139515801 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4270654 4270959 -139515496 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4270959 4271492 -139514963 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4271473 4271789 -139514666 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4271789 4272108 -139514347 + AluY SINE Alu 1 317 0 3886 180 27 70 chr12 4272108 4272874 -139513581 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4272876 4273114 -139513341 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4273132 4273936 -139512519 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4273936 4274216 -139512239 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4274216 4274974 -139511481 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4274974 4275001 -139511454 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4275001 4275108 -139511347 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4275205 4275248 -139511207 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4275309 4275453 -139511002 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4276323 4276462 -139509993 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4276549 4276710 -139509745 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4277628 4277776 -139508679 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4277790 4277985 -139508470 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4278045 4278101 -139508354 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4278101 4278385 -139508070 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4278385 4278559 -139507896 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4278559 4278870 -139507585 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4278870 4278926 -139507529 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4278926 4279222 -139507233 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4279222 4279948 -139506507 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4281710 4281770 -139504685 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4281771 4281890 -139504565 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4281905 4281970 -139504485 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4282064 4282907 -139503548 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4282933 4283361 -139503094 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4283361 4283680 -139502775 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4284368 4284651 -139501804 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4284725 4284878 -139501577 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4284924 4285037 -139501418 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4285037 4285159 -139501296 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4285159 4285203 -139501252 - Alu SINE Alu -18 283 240 2136 108 4 0 chr12 4285231 4285533 -139500922 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4285676 4286113 -139500342 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4286950 4287032 -139499423 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4287309 4287342 -139499113 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4288361 4288490 -139497965 + L2 LINE L2 2555 2692 -622 855 287 90 39 chr12 4288491 4288543 -139497912 - L1MEd LINE L1 -3103 3026 2978 991 182 41 45 chr12 4288543 4288591 -139497864 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4288591 4288901 -139497554 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4288901 4289072 -139497383 - MER20 DNA MER1_type -47 172 1 855 287 90 39 chr12 4289072 4289908 -139496547 - L1MEd LINE L1 -3151 2978 2093 395 301 60 66 chr12 4289910 4290213 -139496242 - L1MEd LINE L1 -4182 2128 1826 2166 106 6 41 chr12 4290213 4290533 -139495922 - AluSc SINE Alu 0 309 1 395 301 60 66 chr12 4290533 4290578 -139495877 - L1MEd LINE L1 -4484 1826 1782 1929 163 10 0 chr12 4290592 4290893 -139495562 - AluJo SINE Alu -8 304 1 749 295 91 28 chr12 4291038 4291832 -139494623 - L1MEd LINE L1 -824 1666 723 227 119 0 0 chr12 4291855 4291897 -139494558 - AluJb SINE Alu -2 300 259 1246 176 0 5 chr12 4291898 4292120 -139494335 - AluJb SINE Alu -91 221 1 720 317 67 70 chr12 4292200 4292605 -139493850 - L1MEd LINE L1 -5446 673 269 2462 53 0 3 chr12 4292605 4292906 -139493549 - AluY SINE Alu -11 300 1 720 317 67 70 chr12 4292906 4293169 -139493286 - L1MEd LINE L1 -5850 269 7 2269 93 0 0 chr12 4293268 4293569 -139492886 + AluSp SINE Alu 1 301 -12 248 250 83 0 chr12 4293944 4294004 -139492451 + L2 LINE L2 3228 3292 -21 1848 132 3 14 chr12 4294209 4294498 -139491957 - AluSx SINE Alu -26 286 1 197 225 202 79 chr12 4294691 4294754 -139491701 + L2 LINE L2 3173 3251 -21 2706 75 20 0 chr12 4294754 4295102 -139491353 - THE1A LTR MaLR 0 355 1 197 225 202 79 chr12 4295102 4295127 -139491328 + L2 LINE L2 3251 3272 0 306 125 0 0 chr12 4295302 4295350 -139491105 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 266 232 0 0 chr12 4295356 4295412 -139491043 - L2 LINE L2 0 3272 3217 2245 101 0 3 chr12 4295454 4295762 -139490693 + AluSg SINE Alu 1 307 -3 248 288 14 27 chr12 4295860 4295933 -139490522 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4296054 4296087 -139490368 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 203 357 71 0 chr12 4297489 4297573 -139488882 + L2 LINE L2 3121 3210 -62 371 264 0 36 chr12 4298404 4298514 -139487941 + MIR3 SINE MIR 82 187 -21 * 391 208 52 42 chr12 4298511 4298607 -139487848 + L2 LINE L2 3176 3272 0 240 238 75 12 chr12 4298650 4298730 -139487725 + MIR SINE MIR 36 120 -88 * 386 186 35 23 chr12 4298725 4298811 -139487644 - MIR SINE MIR -87 121 35 776 264 40 9 chr12 4299461 4299672 -139486783 + MIR SINE MIR 39 255 -7 225 244 0 0 chr12 4299841 4299886 -139486569 - MIR3 SINE MIR -50 158 114 629 208 22 142 chr12 4299959 4300091 -139486364 + MIR SINE MIR 64 210 -52 234 0 0 0 chr12 4300091 4300117 -139486338 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4300122 4300147 -139486308 + (CA)n Simple_repeat Simple_repeat 2 26 0 629 208 22 142 chr12 4300147 4300163 -139486292 + MIR SINE MIR 214 230 -32 1521 177 52 4 chr12 4300163 4300434 -139486021 + AluJo SINE Alu 1 284 -28 629 208 22 142 chr12 4300434 4300504 -139485951 + MIR SINE MIR 230 262 0 234 288 136 8 chr12 4301441 4301566 -139484889 + L2 LINE L2 3168 3308 -5 498 280 71 6 chr12 4301726 4301894 -139484561 + MLT1J2 LTR MaLR 34 212 -238 479 285 103 12 chr12 4302099 4302264 -139484191 - MIR3 SINE MIR -1 207 28 189 195 24 24 chr12 4302856 4302897 -139483558 + L2 LINE L2 3020 3060 -212 848 259 28 9 chr12 4303100 4303312 -139483143 - MIR SINE MIR -46 216 1 2132 95 7 0 chr12 4303405 4303699 -139482756 + AluY SINE Alu 1 296 -15 197 306 32 0 chr12 4303906 4303968 -139482487 - L2 LINE L2 0 3313 3250 2060 110 3 3 chr12 4305660 4305952 -139480503 + AluSc SINE Alu 6 297 -12 2431 60 0 0 chr12 4306124 4306425 -139480030 - AluSc SINE Alu -8 301 1 1793 209 16 16 chr12 4307292 4307666 -139478789 + MLT1A2 LTR MaLR 1 374 0 367 236 9 28 chr12 4307839 4307945 -139478510 + L1MC5 LINE L1 7814 7917 -44 2037 99 41 0 chr12 4308112 4308404 -139478051 - AluSc SINE Alu -5 304 1 740 321 66 30 chr12 4308674 4309137 -139477318 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4309312 4309333 -139477122 + AT_rich Low_complexity Low_complexity 1 21 0 845 128 0 0 chr12 4309510 4309635 -139476820 + AluSg/x SINE Alu 176 300 -12 182 280 0 40 chr12 4310778 4310828 -139475627 - L2 LINE L2 0 3272 3225 653 233 121 9 chr12 4310893 4310973 -139475482 + MER58 DNA MER1_type 1 71 -2349 2240 88 0 0 chr12 4310973 4311270 -139475185 + AluSg1 SINE Alu 1 297 -12 653 233 121 9 chr12 4311270 4311493 -139474962 + MER58 DNA MER1_type 71 2420 0 629 287 12 52 chr12 4311670 4311921 -139474534 + MIR SINE MIR 1 241 -21 339 278 53 30 chr12 4312831 4312964 -139473491 + MIR3 SINE MIR 62 197 -11 2106 103 3 7 chr12 4314158 4314460 -139471995 + AluSg SINE Alu 1 301 -9 2115 97 0 3 chr12 4314711 4315001 -139471454 - AluSq SINE Alu -15 298 10 431 213 25 0 chr12 4315032 4315112 -139471343 + L2 LINE L2 3232 3313 0 431 344 42 14 chr12 4315259 4315474 -139470981 - LTR16A LTR ERVL -34 416 196 2572 40 0 0 chr12 4315792 4316095 -139470360 - AluY SINE Alu -8 303 1 2133 110 0 10 chr12 4316101 4316411 -139470044 - AluSc SINE Alu -2 307 1 263 281 45 56 chr12 4316442 4316531 -139469924 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4317210 4317254 -139469201 + GA-rich Low_complexity Low_complexity 2 45 0 2219 56 0 28 chr12 4317504 4317837 -139468618 + AluY SINE Alu 1 325 0 218 219 0 0 chr12 4317897 4317938 -139468517 - MIR3 SINE MIR -49 159 119 3834 235 58 68 chr12 4317938 4319040 -139467415 + L1MEc LINE L1 18 1130 -5266 2020 125 3 0 chr12 4319040 4319337 -139467118 + AluSq SINE Alu 4 301 -12 3834 235 58 68 chr12 4319337 4319631 -139466824 + L1MEc LINE L1 1130 1425 -4971 2237 96 0 3 chr12 4319631 4319933 -139466522 + AluY SINE Alu 1 301 -10 3834 235 58 68 chr12 4319933 4319958 -139466497 + L1MEc LINE L1 1425 1449 -4947 1591 182 21 3 chr12 4319958 4320244 -139466211 + AluJo SINE Alu 1 291 -21 3834 235 58 68 chr12 4320244 4320324 -139466131 + L1MEc LINE L1 1449 1506 -4890 717 89 0 0 chr12 4320460 4320550 -139465905 - AluY SINE Alu -220 91 2 274 222 14 14 chr12 4320551 4320623 -139465832 + L1MEc LINE L1 1510 1581 -4634 1930 150 0 3 chr12 4320623 4320936 -139465519 - AluSx SINE Alu 0 312 1 853 105 48 0 chr12 4320942 4321066 -139465389 + AluSg/x SINE Alu 162 291 -19 1789 245 103 40 chr12 4321067 4321602 -139464853 + L1MEc LINE L1 1651 2151 -4064 1939 125 3 3 chr12 4321602 4321897 -139464558 + AluSc SINE Alu 1 295 -14 1789 245 103 40 chr12 4321897 4322527 -139463928 + L1MEc LINE L1 2151 2889 -3326 614 206 103 122 chr12 4322506 4322826 -139463629 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4323135 4323181 -139463274 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4323201 4323424 -139463031 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4323467 4323555 -139462900 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4323556 4323584 -139462871 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4324703 4324824 -139461631 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4324928 4325085 -139461370 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4326716 4326750 -139459705 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4327116 4327185 -139459270 - MIR3 SINE MIR -129 79 11 320 228 205 16 chr12 4377876 4378003 -139408452 + MIR SINE MIR 56 206 -56 3303 64 0 7 chr12 4378018 4378469 -139407986 + LTR7 LTR ERV1 1 448 -2 19935 87 25 16 chr12 4378471 4381441 -139405014 + HERVH LTR ERV1 1 2995 -4718 882 129 27 0 chr12 4381420 4381567 -139404888 + HERVH LTR ERV1 3140 3290 -4423 * 944 141 0 0 chr12 4381569 4381711 -139404744 + HERVH LTR ERV1 3503 3644 -4069 * 2535 163 0 0 chr12 4381710 4382120 -139404335 + HERVH LTR ERV1 4740 5149 -2564 1298 125 18 36 chr12 4382121 4382345 -139404110 + HERVH LTR ERV1 5600 5819 -1894 * 2469 76 45 13 chr12 4382343 4382723 -139403732 + HERVH LTR ERV1 7322 7713 0 3317 56 5 7 chr12 4382723 4383172 -139403283 + LTR7 LTR ERV1 1 448 -2 2236 102 3 0 chr12 4383217 4383537 -139402918 + AluSp SINE Alu 1 321 0 227 318 61 38 chr12 4383545 4383677 -139402778 + L2 LINE L2 3172 3306 -7 2320 99 3 0 chr12 4383896 4384198 -139402257 + AluSp SINE Alu 1 303 -10 223 305 39 62 chr12 4385682 4385811 -139400644 - MIR SINE MIR -68 140 26 244 286 71 54 chr12 4386146 4386258 -139400197 + L2 LINE L2 3191 3304 -9 * 334 236 47 38 chr12 4386235 4386341 -139400114 - L2 LINE L2 -8 3264 3158 404 298 146 20 chr12 4387633 4387989 -139398466 + L2 LINE L2 2543 2943 -371 399 341 32 0 chr12 4388094 4388220 -139398235 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4388511 4388539 -139397916 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2202 87 7 0 chr12 4388539 4388814 -139397641 - AluSp SINE Alu -32 281 5 2163 98 7 23 chr12 4388902 4389209 -139397246 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4389211 4389274 -139397181 + (TA)n Simple_repeat Simple_repeat 2 63 0 213 229 0 0 chr12 4389455 4389503 -139396952 + L2 LINE L2 3265 3312 -1 292 302 28 18 chr12 4389646 4389765 -139396690 + MIR SINE MIR 36 164 -63 325 285 146 73 chr12 4389787 4390075 -139396380 - L2 LINE L2 -73 3199 2891 215 344 0 0 chr12 4390147 4390211 -139396244 - L2 LINE L2 -581 2733 2670 196 284 72 93 chr12 4390260 4390454 -139396001 - MIR3 SINE MIR -16 192 3 35 0 0 0 chr12 4390730 4390765 -139395690 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4390783 4390818 -139395637 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4390885 4390914 -139395541 + GC_rich Low_complexity Low_complexity 1 29 0 198 258 32 32 chr12 4391411 4391473 -139394982 + MIR3 SINE MIR 101 162 -46 * 446 210 84 56 chr12 4391464 4391607 -139394848 + MIR3 SINE MIR 16 162 -46 2477 84 0 3 chr12 4392015 4392324 -139394131 + AluSq SINE Alu 1 308 -5 465 216 45 52 chr12 4392522 4392656 -139393799 + MIR3 SINE MIR 66 198 -10 493 232 146 43 chr12 4393673 4393906 -139392549 - MER112 DNA MER1_type -3 257 1 420 340 54 17 chr12 4394385 4394626 -139391829 - L3b LINE CR1 -90 1493 1244 238 321 126 46 chr12 4395111 4395251 -139391204 - MIR3 SINE MIR -67 141 6 2223 68 32 36 chr12 4395597 4395906 -139390549 - AluY SINE Alu -3 308 1 1020 275 63 25 chr12 4396265 4396629 -139389826 - L3 LINE CR1 -4 1573 1196 333 320 116 6 chr12 4396707 4396888 -139389567 - MIR SINE MIR -16 246 46 2575 38 0 0 chr12 4398545 4398837 -139387618 + AluY SINE Alu 13 304 -7 1776 170 0 3 chr12 4399168 4399451 -139387004 + AluJb SINE Alu 1 282 -30 472 282 192 13 chr12 4399992 4400148 -139386307 + MIR3 SINE MIR 8 191 -17 234 321 24 12 chr12 4401455 4401539 -139384916 - MIR3 SINE MIR -9 199 115 241 258 62 52 chr12 4401614 4401711 -139384744 + MIR SINE MIR 21 118 -144 1980 148 6 3 chr12 4402061 4402372 -139384083 + AluJo SINE Alu 1 312 0 876 276 65 50 chr12 4402457 4402859 -139383596 - L2 LINE L2 0 3313 2906 287 292 75 33 chr12 4403286 4403406 -139383049 + L2 LINE L2 3177 3301 -12 186 254 111 0 chr12 4403644 4403707 -139382748 + MIR SINE MIR 66 135 -127 290 337 21 0 chr12 4405305 4405400 -139381055 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4406526 4406588 -139379867 + T-rich Low_complexity Low_complexity 1 62 0 431 254 105 72 chr12 4407327 4407420 -139379035 + MIR SINE MIR 34 122 -140 2162 115 0 0 chr12 4407420 4407708 -139378747 - AluY SINE Alu -18 293 6 431 254 105 72 chr12 4407708 4407823 -139378632 + MIR SINE MIR 122 249 -13 389 238 85 0 chr12 4407840 4407961 -139378494 + MIR SINE MIR 28 167 -61 279 288 85 65 chr12 4408046 4408199 -139378256 + MIR3 SINE MIR 48 203 -5 639 245 89 51 chr12 4408517 4408754 -139377701 + MIR SINE MIR 17 262 0 273 273 13 13 chr12 4408905 4408982 -139377473 + MER5B DNA MER1_type 93 169 -9 349 324 14 42 chr12 4409064 4409206 -139377249 + MIR3 SINE MIR 65 202 -6 597 277 13 56 chr12 4409503 4409774 -139376681 - MIR SINE MIR 0 262 3 1209 104 245 60 chr12 4410054 4410323 -139376132 + MER33 DNA MER1_type 1 319 -5 752 201 123 6 chr12 4410328 4410507 -139375948 + MIR SINE MIR 32 231 -31 187 207 9 180 chr12 4410749 4410860 -139375595 + L2 LINE L2 3168 3259 -13 500 277 162 7 chr12 4414056 4414204 -139372251 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4416978 4417006 -139369449 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2822 153 95 9 chr12 4417229 4417764 -139368691 - L1MD3 LINE L1 -11 7984 7404 527 204 0 19 chr12 4417764 4417867 -139368588 - MLT1F1 LTR MaLR -442 125 25 267 178 0 82 chr12 4417868 4417941 -139368514 - L1MD3 LINE L1 -895 7100 7034 1066 185 0 5 chr12 4417944 4418128 -139368327 - MLT1C LTR MaLR -1 466 284 * 1261 201 73 34 chr12 4418123 4418451 -139368004 - MLT1C LTR MaLR -120 347 7 3271 196 59 60 chr12 4418461 4418596 -139367859 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4418596 4418618 -139367837 + (TC)n Simple_repeat Simple_repeat 1 22 0 3271 196 59 60 chr12 4418618 4419459 -139366996 - L1MD3 LINE L1 704 6870 6030 295 298 40 40 chr12 4419991 4420142 -139366313 + L2 LINE L2 2966 3116 -197 296 292 0 0 chr12 4420177 4420249 -139366206 + L2 LINE L2 3223 3294 -19 231 192 19 0 chr12 4420586 4420638 -139365817 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4420821 4420875 -139365580 + AT_rich Low_complexity Low_complexity 1 54 0 334 243 64 21 chr12 4420913 4421053 -139365402 - L1MC5 LINE L1 -99 7862 7717 318 273 0 0 chr12 4421204 4421281 -139365174 - L1MC4 LINE L1 -610 7432 7356 1245 150 134 8 chr12 4421423 4421669 -139364786 - Tigger3(Golem) DNA MER2_type -1 3028 2752 919 142 239 15 chr12 4421673 4421878 -139364577 + AluSg1 SINE Alu 49 299 -10 315 255 49 10 chr12 4421947 4422049 -139364406 - L1MC5 LINE L1 -895 7066 6961 3409 201 67 27 chr12 4422101 4422907 -139363548 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4422902 4425593 -139360862 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4425593 4425879 -139360576 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4425879 4429463 -139356992 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4429443 4429551 -139356904 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4429550 4429632 -139356823 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4429845 4429886 -139356569 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4429886 4430194 -139356261 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4430194 4430353 -139356102 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4430375 4430630 -139355825 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4430730 4430809 -139355646 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4431098 4431423 -139355032 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4431423 4431588 -139354867 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4431588 4431880 -139354575 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4431880 4432012 -139354443 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4432012 4432312 -139354143 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4432372 4432641 -139353814 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4432644 4432967 -139353488 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4432982 4433068 -139353387 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4433068 4433238 -139353217 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4433238 4433272 -139353183 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4433272 4433316 -139353139 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4433316 4433359 -139353096 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4433359 4433545 -139352910 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4433545 4434172 -139352283 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4434170 4435912 -139350543 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4435912 4436453 -139350002 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4436453 4436744 -139349711 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4436744 4436781 -139349674 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4436781 4436801 -139349654 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4436801 4438324 -139348131 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4438324 4438703 -139347752 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4438704 4439168 -139347287 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4440480 4440935 -139345520 - MLT1J LTR MaLR -57 454 1 272 246 146 31 chr12 4441418 4441548 -139344907 - MIR SINE MIR -62 146 28 1212 190 4 4 chr12 4441599 4441825 -139344630 - AluJb SINE Alu -6 306 81 1797 151 10 7 chr12 4441826 4442117 -139344338 - AluJo SINE Alu -20 292 1 294 240 163 47 chr12 4442162 4442291 -139344164 - MIR SINE MIR -71 191 48 272 301 136 11 chr12 4443588 4443764 -139342691 - MIR SINE MIR -27 235 38 189 261 0 0 chr12 4444832 4444878 -139341577 - L3 LINE CR1 -9 1568 1523 233 298 39 19 chr12 4445056 4445160 -139341295 - MIR SINE MIR -98 164 59 33 0 0 0 chr12 4446549 4446582 -139339873 + AT_rich Low_complexity Low_complexity 1 33 0 693 100 0 0 chr12 4446674 4446774 -139339681 + AluY SINE Alu 208 307 -4 2051 167 30 3 chr12 4446879 4447245 -139339210 + L1MB5 LINE L1 5799 6174 0 272 75 57 75 chr12 4447262 4447315 -139339140 + L1MC1 LINE L1 6281 6332 -1 236 301 135 12 chr12 4447508 4447612 -139338843 + L2 LINE L2 3071 3161 -111 2391 104 3 0 chr12 4447612 4447920 -139338535 - AluSp SINE Alu -4 309 1 236 301 135 12 chr12 4447920 4447978 -139338477 + L2 LINE L2 3161 3253 -19 240 187 13 80 chr12 4447988 4448063 -139338392 + MIR SINE MIR 56 125 -83 252 279 139 0 chr12 4448457 4448586 -139337869 - MIR SINE MIR -62 200 54 212 365 69 14 chr12 4448612 4448757 -139337698 + L3b LINE CR1 1406 1558 -25 342 276 270 6 chr12 4449361 4449524 -139336931 - MIR SINE MIR -42 220 15 1096 236 105 57 chr12 4449622 4450306 -139336149 - L1MC5 LINE L1 -36 7925 7260 331 293 30 0 chr12 4450991 4451090 -139335365 - MIR3 SINE MIR -25 183 82 1048 154 0 0 chr12 4451092 4451254 -139335201 + FRAM SINE Alu 2 163 -13 194 310 35 78 chr12 4451746 4451862 -139334593 + L2 LINE L2 3203 3313 0 388 247 69 70 chr12 4452002 4452251 -139334204 - Charlie2a DNA MER1_type -32 2830 2582 1879 176 3 3 chr12 4452251 4452558 -139333897 - AluJb SINE Alu -5 307 1 388 247 69 70 chr12 4452558 4452807 -139333648 - Charlie2a DNA MER1_type -280 2582 2274 7260 220 56 69 chr12 4452814 4454715 -139331740 + L1MD1 LINE L1 2713 4638 -1591 1180 190 138 30 chr12 4454715 4454984 -139331471 + AluJo SINE Alu 5 302 0 7260 220 56 69 chr12 4454984 4454995 -139331460 + L1MD1 LINE L1 4638 4648 -1581 2575 65 0 0 chr12 4454995 4455302 -139331153 + AluY SINE Alu 1 307 -4 7260 220 56 69 chr12 4455302 4455659 -139330796 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4455659 4455706 -139330749 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2256 89 3 0 chr12 4455706 4455988 -139330467 - AluSp SINE Alu -30 283 1 7260 220 56 69 chr12 4455988 4456167 -139330288 + L1MD1 LINE L1 5007 5187 -1042 2244 116 0 3 chr12 4456167 4456477 -139329978 + AluSc SINE Alu 1 309 0 7260 220 56 69 chr12 4456477 4456845 -139329610 + L1MD1 LINE L1 5187 5486 -743 4959 196 25 63 chr12 4459264 4460500 -139325955 + L1MC2 LINE L1 4084 5365 -979 2111 80 29 0 chr12 4460500 4460798 -139325657 + AluY SINE Alu 1 306 0 4959 196 25 63 chr12 4460798 4461057 -139325398 + L1MC2 LINE L1 5365 5632 -712 793 142 0 8 chr12 4461057 4461191 -139325264 - L1PB2 LINE L1 -4 6147 6015 4959 196 25 63 chr12 4461191 4462039 -139324416 + L1MC2 LINE L1 5632 6343 -1 2205 86 0 4 chr12 4462064 4462342 -139324113 - AluSg SINE Alu -20 290 14 2751 225 60 3 chr12 4462363 4463034 -139323421 + L1MC3 LINE L1 7075 7783 -2 3223 172 17 32 chr12 4463043 4463676 -139322779 + L1MD1 LINE L1 5475 6098 -144 250 204 0 0 chr12 4463676 4463725 -139322730 + AluJ/monomer SINE Alu 257 305 -3 1961 73 4 4 chr12 4463739 4463987 -139322468 - AluSp SINE Alu -17 296 49 2853 199 56 38 chr12 4463989 4464013 -139322442 - Charlie2a DNA MER1_type -610 2252 2230 2276 75 0 0 chr12 4464013 4464319 -139322136 - AluY SINE Alu 0 306 1 2853 199 56 38 chr12 4464319 4465023 -139321432 - Charlie2a DNA MER1_type -632 2230 1506 2292 118 0 0 chr12 4465023 4465327 -139321128 - AluSc SINE Alu -5 304 1 2853 199 56 38 chr12 4465327 4465364 -139321091 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4465420 4465477 -139320978 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1570 266 116 38 chr12 4465498 4466110 -139320345 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4467390 4467415 -139319040 + (A)n Simple_repeat Simple_repeat 1 25 0 2070 135 0 3 chr12 4467420 4467717 -139318738 + AluJo SINE Alu 3 298 -14 388 311 62 6 chr12 4468275 4468436 -139318019 - MIR SINE MIR -1 261 92 254 308 158 0 chr12 4468479 4468612 -139317843 + L3 LINE CR1 1404 1557 -20 209 256 0 13 chr12 4468701 4468779 -139317676 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4468794 4468828 -139317627 + AT_rich Low_complexity Low_complexity 1 34 0 669 179 0 83 chr12 4468986 4469131 -139317324 - FLAM_C SINE Alu 0 133 1 200 263 163 67 chr12 4469728 4469820 -139316635 - L2 LINE L2 -238 3034 2952 1857 140 3 42 chr12 4469820 4470127 -139316328 + AluJo SINE Alu 2 296 -16 200 263 163 67 chr12 4470127 4470243 -139316212 - L2 LINE L2 -320 2952 2806 1653 163 88 0 chr12 4471404 4471735 -139314720 + MER46B DNA MER2_type 1 235 -1 531 247 89 32 chr12 4471963 4472210 -139314245 + L2 LINE L2 3050 3310 -3 298 310 70 10 chr12 4472232 4472332 -139314123 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4472355 4472394 -139314061 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 219 274 0 0 chr12 4472424 4472475 -139313980 - L2 LINE L2 -12 3260 3210 238 289 20 94 chr12 4473040 4473189 -139313266 - MIR3 SINE MIR -3 205 68 419 234 52 16 chr12 4473411 4473556 -139312899 + L1ME3 LINE L1 5987 6132 -38 1236 35 0 0 chr12 4473646 4473787 -139312668 + AluY SINE Alu 165 305 -6 2574 62 0 3 chr12 4473805 4474111 -139312344 + AluSc SINE Alu 1 305 -4 254 133 44 0 chr12 4474115 4474160 -139312295 - MIR SINE MIR -96 166 120 869 106 50 7 chr12 4474307 4474448 -139312007 - L1MB3 LINE L1 -3 6180 6034 331 299 0 0 chr12 4474450 4474547 -139311908 + MIR SINE MIR 49 145 -117 3290 138 2 8 chr12 4474575 4475055 -139311400 + MER1A DNA MER1_type 53 529 0 328 364 29 0 chr12 4475752 4475892 -139310563 + MIR SINE MIR 49 192 -70 233 273 39 26 chr12 4477024 4477101 -139309354 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4477785 4477806 -139308649 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4478004 4478046 -139308409 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4478045 4478092 -139308363 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 256 193 35 0 chr12 4478476 4478533 -139307922 - L3 LINE CR1 -119 1458 1400 262 167 0 0 chr12 4479087 4479135 -139307320 - MIR SINE MIR -108 154 107 571 298 128 5 chr12 4480391 4480609 -139305846 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4480701 4480755 -139305700 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 425 295 47 37 chr12 4481481 4481671 -139304784 + MIR SINE MIR 51 242 -20 2459 79 0 0 chr12 4481805 4482109 -139304346 - AluSq SINE Alu -5 308 5 2490 51 3 26 chr12 4482121 4482432 -139304023 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4482598 4482620 -139303835 + (CA)n Simple_repeat Simple_repeat 1 22 0 338 275 84 28 chr12 4483455 4483597 -139302858 - MIR SINE MIR -93 169 20 2464 48 10 0 chr12 4483762 4484054 -139302401 - AluSg SINE Alu -15 295 1 2268 107 0 0 chr12 4484478 4484777 -139301678 + AluSq SINE Alu 1 299 -14 2924 207 12 14 chr12 4484806 4485518 -139300937 - L1M LINE L1 -737 5429 4720 4083 289 66 52 chr12 4485522 4485814 -139300641 - L1ME3A LINE L1 -232 6174 5888 2585 47 0 3 chr12 4485814 4486111 -139300344 + AluY SINE Alu 1 296 -15 4083 289 66 52 chr12 4486111 4487455 -139299000 - L1ME3A LINE L1 -518 5888 4564 1886 179 0 0 chr12 4487455 4487751 -139298704 - AluJo SINE Alu -16 296 1 4083 289 66 52 chr12 4487751 4487972 -139298483 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4487972 4488004 -139298451 + (TG)n Simple_repeat Simple_repeat 1 32 0 4083 289 66 52 chr12 4488004 4488522 -139297933 - L1ME3A LINE L1 -2058 4348 3839 2239 103 3 0 chr12 4488522 4488838 -139297617 - AluSp SINE Alu 0 313 1 4083 289 66 52 chr12 4488838 4489054 -139297401 - L1ME3A LINE L1 -2567 3839 3627 1939 205 55 26 chr12 4489054 4489417 -139297038 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4489417 4489449 -139297006 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2111 111 0 11 chr12 4489452 4489732 -139296723 - AluSx SINE Alu -31 281 5 1939 205 55 26 chr12 4489732 4489818 -139296637 - MLT1C LTR MaLR -352 115 1 4083 289 66 52 chr12 4489818 4490827 -139295628 - L1ME3A LINE L1 -2779 3627 2518 1565 187 33 0 chr12 4490827 4491127 -139295328 - AluJb SINE Alu -2 310 1 4083 289 66 52 chr12 4491127 4491176 -139295279 - L1ME3A LINE L1 -3888 2518 2471 241 205 60 24 chr12 4491260 4491343 -139295112 - L1ME3A LINE L1 -3967 2417 2332 323 295 44 6 chr12 4491620 4491823 -139294632 - L1M4c LINE L1 -4444 1938 1620 683 199 29 15 chr12 4491835 4491971 -139294484 - LTR40a LTR ERVL -379 140 3 595 230 23 40 chr12 4492722 4492896 -139293559 - MER5A DNA MER1_type -5 184 14 446 320 11 17 chr12 4494809 4494990 -139291465 - MIR3 SINE MIR -10 198 19 2247 75 3 3 chr12 4495005 4495318 -139291137 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4495599 4495624 -139290831 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4495868 4495912 -139290543 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 296 71 31 chr12 4496661 4496759 -139289696 - MIR SINE MIR -113 149 48 1805 131 78 11 chr12 4497289 4497571 -139288884 + AluJb SINE Alu 1 301 -11 7520 48 0 0 chr12 4497866 4498767 -139287688 - L1PA5 LINE L1 0 6154 5254 180 324 96 7 chr12 4498788 4498924 -139287531 + L3 LINE CR1 1418 1565 -12 219 238 88 62 chr12 4499230 4499310 -139287145 + L2 LINE L2 3214 3295 -18 1476 194 3 31 chr12 4499320 4499609 -139286846 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4499922 4500056 -139286399 + CT-rich Low_complexity Low_complexity 2 136 0 236 324 120 9 chr12 4500738 4500846 -139285609 - L3b LINE CR1 -27 1556 1437 328 235 0 0 chr12 4501085 4501153 -139285302 + MIR SINE MIR 194 261 -1 419 250 45 30 chr12 4501415 4501547 -139284908 + MER94 DNA DNA 1 134 0 1779 169 3 3 chr12 4501625 4501909 -139284546 - AluJb SINE Alu -14 298 15 194 341 48 16 chr12 4501990 4502116 -139284339 + MER5A DNA MER1_type 33 162 -27 187 246 77 15 chr12 4502227 4502292 -139284163 - MIR SINE MIR -93 115 47 2263 109 3 3 chr12 4502857 4503169 -139283286 + AluSx SINE Alu 1 312 0 261 194 0 16 chr12 4503467 4503529 -139282926 - MIR SINE MIR -139 123 63 263 294 33 11 chr12 4503715 4503807 -139282648 - MIR3 SINE MIR -4 204 111 1169 238 188 22 chr12 4503835 4504372 -139282083 + Charlie2b DNA MER1_type 44 669 -2113 1043 235 128 18 chr12 4504458 4504678 -139281777 + L2 LINE L2 597 791 -2523 2151 91 24 7 chr12 4504678 4504965 -139281490 - AluSg SINE Alu -18 292 1 1043 235 128 18 chr12 4504965 4505190 -139281265 + L2 LINE L2 791 1091 -2223 353 294 125 0 chr12 4506100 4506260 -139280195 + MIR SINE MIR 49 228 -34 203 182 81 61 chr12 4506403 4506502 -139279953 + MIR SINE MIR 42 142 -66 267 282 166 30 chr12 4506894 4507058 -139279397 + MIR SINE MIR 18 196 -62 417 286 66 36 chr12 4507182 4507378 -139279077 - MIR SINE MIR -1 261 60 686 161 161 21 chr12 4507547 4507690 -139278765 - FRAM SINE Alu -12 164 2 202 344 22 0 chr12 4507927 4508017 -139278438 - MIR3 SINE MIR -16 192 101 2402 39 7 7 chr12 4508864 4509197 -139277258 - AluY SINE Alu 0 333 1 6606 84 14 2 chr12 4509204 4509872 -139276583 - L1PA14 LINE L1 0 6161 5478 2352 83 7 10 chr12 4509872 4510174 -139276281 - AluSp SINE Alu -12 301 1 6606 84 14 2 chr12 4510174 4510402 -139276053 - L1PA14 LINE L1 -683 5478 5254 2367 91 0 3 chr12 4510635 4510932 -139275523 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4510942 4511054 -139275401 + CT-rich Low_complexity Low_complexity 3 115 0 240 257 27 14 chr12 4511802 4511876 -139274579 + L1ME LINE L1 5845 5919 -202 2242 112 0 0 chr12 4512354 4512657 -139273798 - AluSx SINE Alu -9 303 1 268 214 36 116 chr12 4513366 4513478 -139272977 + MIR SINE MIR 84 186 -76 5234 158 56 27 chr12 4513478 4513530 -139272925 + L1MC2 LINE L1 5293 5342 -1002 946 107 15 0 chr12 4513530 4513661 -139272794 + FLAM_C SINE Alu 1 133 0 5234 158 56 27 chr12 4513661 4514021 -139272434 + L1MC2 LINE L1 5342 5690 -654 1974 123 18 0 chr12 4514021 4514325 -139272130 - AluSx SINE Alu 0 309 1 5234 158 56 27 chr12 4514325 4514932 -139271523 + L1MC2 LINE L1 5690 6343 -1 274 186 14 86 chr12 4514944 4515014 -139271441 + MIR3 SINE MIR 91 155 -53 325 157 0 0 chr12 4515021 4515072 -139271383 - MER3 DNA MER1_type -127 82 32 2264 102 0 10 chr12 4515096 4515400 -139271055 - AluSc SINE Alu -8 301 1 2456 81 0 0 chr12 4517178 4517475 -139268980 + AluSp SINE Alu 1 297 -16 2023 117 31 3 chr12 4517487 4517778 -139268677 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4517916 4517939 -139268516 + (T)n Simple_repeat Simple_repeat 1 23 0 924 143 75 7 chr12 4518567 4518714 -139267741 - FRAM SINE Alu -19 157 1 1003 199 103 18 chr12 4518714 4518943 -139267512 + L1ME3A LINE L1 5863 6122 -48 2326 107 0 3 chr12 4518943 4519253 -139267202 + AluSc SINE Alu 1 309 0 1003 199 103 18 chr12 4519253 4519304 -139267151 + L1ME3A LINE L1 6122 6167 -3 723 136 8 8 chr12 4519310 4519428 -139267027 + FLAM_C SINE Alu 17 134 -9 1207 224 98 67 chr12 4519660 4520110 -139266345 + MLT1C LTR MaLR 1 464 -3 2254 102 3 0 chr12 4520642 4520976 -139265479 - AluSx SINE Alu 0 335 1 1021 221 78 11 chr12 4521438 4521719 -139264736 + Charlie2b DNA MER1_type 370 669 -2113 2392 177 174 47 chr12 4521753 4522066 -139264389 + Charlie2a DNA MER1_type 1472 1744 -1118 2327 89 3 0 chr12 4522066 4522358 -139264097 - AluSg SINE Alu -17 293 1 2392 177 174 47 chr12 4522358 4522662 -139263793 + Charlie2a DNA MER1_type 1744 2008 -854 2586 47 3 0 chr12 4522662 4522961 -139263494 + AluY SINE Alu 1 300 -11 2392 177 174 47 chr12 4522961 4523171 -139263284 + Charlie2a DNA MER1_type 2008 2190 -672 1593 126 29 8 chr12 4523171 4523410 -139263045 - AluJo SINE Alu -9 303 60 2392 177 174 47 chr12 4523410 4523682 -139262773 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4524013 4524038 -139262417 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4525593 4525767 -139260688 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4526012 4526307 -139260148 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4526314 4526409 -139260046 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4526425 4526530 -139259925 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4526755 4526865 -139259590 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4527535 4527654 -139258801 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4527707 4527958 -139258497 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4528065 4528561 -139257894 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4528561 4528863 -139257592 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4528863 4529511 -139256944 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4529818 4529883 -139256572 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4529939 4530208 -139256247 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4531042 4531390 -139255065 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4531390 4531420 -139255035 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4531420 4531438 -139255017 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4531445 4531558 -139254897 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4531613 4531644 -139254811 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4531725 4531850 -139254605 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4531853 4531994 -139254461 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4532025 4532085 -139254370 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4532098 4532249 -139254206 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4532519 4533012 -139253443 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4533135 4533331 -139253124 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4533477 4533587 -139252868 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4533838 4534251 -139252204 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4534301 4534401 -139252054 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4534401 4534697 -139251758 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4534697 4534834 -139251621 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4534834 4534912 -139251543 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4534912 4535319 -139251136 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4535335 4535625 -139250830 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4535828 4535898 -139250557 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4535987 4536165 -139250290 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4536323 4536596 -139249859 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4536718 4537211 -139249244 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4537211 4537537 -139248918 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4537547 4537855 -139248600 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4537855 4538755 -139247700 + L1MEc LINE L1 524 1470 -4926 2859 190 104 102 chr12 4538874 4539142 -139247313 + L1MEc LINE L1 2574 2840 -3375 225 125 0 0 chr12 4539142 4539174 -139247281 - Alu SINE Alu -224 78 47 2859 190 104 102 chr12 4539174 4539259 -139247196 + L1MEc LINE L1 2840 2923 -3292 7971 19 0 0 chr12 4539259 4540298 -139246157 - L1PA3 LINE L1 0 6155 5117 2859 190 104 102 chr12 4540298 4540839 -139245616 + L1MEc LINE L1 2923 3461 -2754 2167 102 0 7 chr12 4540839 4541124 -139245331 - AluSg SINE Alu -27 283 1 2859 190 104 102 chr12 4541124 4541156 -139245299 + L1MEc LINE L1 3461 3491 -2724 2326 45 52 3 chr12 4541156 4541445 -139245010 - AluY SINE Alu -8 303 1 2859 190 104 102 chr12 4541445 4541869 -139244586 + L1MEc LINE L1 3491 3986 -2229 337 314 20 65 chr12 4541912 4542157 -139244298 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4542221 4542503 -139243952 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4542678 4543330 -139243125 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4543346 4543799 -139242656 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4543804 4544543 -139241912 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4544631 4545015 -139241440 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4545015 4545224 -139241231 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4545224 4546385 -139240070 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4546385 4546686 -139239769 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4546686 4546875 -139239580 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4546875 4547161 -139239294 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4547161 4547341 -139239114 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4547473 4547579 -139238876 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4547579 4547625 -139238830 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4547625 4547707 -139238748 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4547707 4548025 -139238430 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4548025 4548092 -139238363 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4548501 4548601 -139237854 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4549757 4550001 -139236454 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4550025 4550490 -139235965 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4550509 4550543 -139235912 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4550754 4550911 -139235544 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4551390 4551673 -139234782 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4552035 4552163 -139234292 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4552163 4552465 -139233990 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4552465 4552524 -139233931 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4552830 4553153 -139233302 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4553786 4553934 -139232521 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4554481 4554773 -139231682 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4555012 4555279 -139231176 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4555426 4555457 -139230998 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4555457 4555759 -139230696 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4555759 4555958 -139230497 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4556816 4557006 -139229449 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4557040 4557175 -139229280 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4557268 4557410 -139229045 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4557906 4558066 -139228389 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4558738 4558839 -139227616 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4561409 4561564 -139224891 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4562065 4562213 -139224242 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4562478 4562958 -139223497 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4564134 4564279 -139222176 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4564465 4564862 -139221593 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4564965 4565143 -139221312 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4565145 4565446 -139221009 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4565641 4565746 -139220709 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4566322 4567201 -139219254 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4567550 4567860 -139218595 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4567890 4567982 -139218473 + Alu SINE Alu 241 332 0 271 250 16 0 chr12 4569210 4569274 -139217181 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4569488 4569563 -139216892 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4569872 4570186 -139216269 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4570199 4570496 -139215959 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4570513 4570815 -139215640 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4571770 4572068 -139214387 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4572645 4572809 -139213646 - FRAM SINE Alu -2 164 1 9244 208 69 24 chr12 4573354 4575425 -139211030 + L1M2 LINE L1 157 2319 -4530 333 203 0 0 chr12 4575772 4575831 -139210624 + MER2 DNA MER2_type 287 345 0 362 300 36 7 chr12 4575839 4575979 -139210476 + MIR3 SINE MIR 54 197 -11 6912 52 36 0 chr12 4578788 4579878 -139206577 - L1P2 LINE L1 -642 5512 4381 297 295 93 16 chr12 4580379 4580508 -139205947 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4580600 4580735 -139205720 + MLT1J LTR MaLR 1 137 -374 1258 132 16 5 chr12 4580769 4580959 -139205496 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4581740 4581777 -139204678 + (TTA)n Simple_repeat Simple_repeat 1 37 0 238 184 0 174 chr12 4584274 4584383 -139202072 - MIR SINE MIR -117 145 56 538 242 97 36 chr12 4584789 4585037 -139201418 + AluJo SINE Alu 3 265 -47 8201 97 32 2 chr12 4585320 4586583 -139199872 - L1P LINE L1 -3385 2761 1460 375 307 62 41 chr12 4586745 4586989 -139199466 - L2 LINE L2 -832 2482 2234 1416 266 70 33 chr12 4586997 4587547 -139198908 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4589790 4589831 -139196624 + (CA)n Simple_repeat Simple_repeat 2 42 0 2211 98 3 10 chr12 4590008 4590313 -139196142 - AluSc SINE Alu -6 303 1 565 120 11 0 chr12 4590314 4590406 -139196049 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4591421 4591468 -139194987 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4593733 4594036 -139192419 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4594055 4594142 -139192313 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4594171 4594552 -139191903 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4595431 4595458 -139190997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4596857 4596897 -139189558 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4597001 4597035 -139189420 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4597115 4597158 -139189297 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4597836 4597905 -139188550 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4598381 4598402 -139188053 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4599242 4599537 -139186918 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4600302 4600610 -139185845 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4601433 4601692 -139184763 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4601974 4602172 -139184283 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4602190 4602237 -139184218 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4602237 4602543 -139183912 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4602543 4602584 -139183871 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4602584 4602926 -139183529 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4602926 4603423 -139183032 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4603653 4603716 -139182739 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4604371 4604665 -139181790 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4604797 4604850 -139181605 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4605059 4605361 -139181094 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4605432 4605760 -139180695 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4605769 4605936 -139180519 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4605936 4606205 -139180250 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4606205 4608483 -139177972 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4608485 4608581 -139177874 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4608581 4611926 -139174529 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4611926 4613967 -139172488 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4613967 4613982 -139172473 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4613981 4614908 -139171547 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4615060 4615352 -139171103 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4615425 4615621 -139170834 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4615671 4615791 -139170664 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4616015 4616306 -139170149 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4616308 4616503 -139169952 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4616625 4616921 -139169534 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4617375 4617692 -139168763 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4617705 4618011 -139168444 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4620761 4621026 -139165429 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4621932 4622237 -139164218 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4622421 4622744 -139163711 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4622780 4623431 -139163024 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4623609 4623958 -139162497 - L1MC1 LINE L1 0 6402 6061 2337 80 0 3 chr12 4625028 4625328 -139161127 + AluY SINE Alu 1 299 -12 1176 97 0 0 chr12 4625345 4625490 -139160965 + AluSq/x SINE Alu 1 145 -168 201 74 0 0 chr12 4625494 4625521 -139160934 + (A)n Simple_repeat Simple_repeat 1 27 0 1110 239 75 95 chr12 4625589 4626242 -139160213 - L1MC4 LINE L1 -1 8041 7402 1386 229 90 43 chr12 4626249 4626739 -139159716 - L1MC4 LINE L1 -779 7263 6751 2075 218 63 51 chr12 4626756 4627306 -139159149 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4627306 4627351 -139159104 + (TG)n Simple_repeat Simple_repeat 2 46 0 2075 218 63 51 chr12 4627351 4627957 -139158498 - L1MC1 LINE L1 -893 5340 4713 * 5425 153 43 89 chr12 4627954 4628249 -139158206 - L1MC3 LINE L1 0 7785 7478 566 155 29 0 chr12 4628249 4628352 -139158103 - L1MB4 LINE L1 0 6180 6075 5425 153 43 89 chr12 4628352 4628367 -139158088 - L1MC3 LINE L1 -307 7478 7464 2576 141 20 0 chr12 4628367 4628764 -139157691 - L1MA5 LINE L1 -10 6290 5886 5425 153 43 89 chr12 4628764 4628943 -139157512 - L1MC3 LINE L1 -321 7464 7278 2333 93 10 6 chr12 4628943 4629255 -139157200 - AluSp SINE Alu 0 313 1 5425 153 43 89 chr12 4629255 4630034 -139156421 - L1MC3 LINE L1 -507 7278 6573 879 106 28 28 chr12 4630043 4630184 -139156271 - L1MC3 LINE L1 -1449 6336 6196 * 4483 250 124 40 chr12 4630173 4630469 -139155986 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4630469 4630504 -139155951 + (TG)n Simple_repeat Simple_repeat 2 36 0 4483 250 124 40 chr12 4630504 4630684 -139155771 - L1MC1 LINE L1 -1750 4465 4302 1613 172 104 3 chr12 4630684 4631010 -139155445 + MER46B DNA MER2_type 1 234 -2 4483 250 124 40 chr12 4631010 4631797 -139154658 - L1MC1 LINE L1 -1913 4302 3583 1815 135 7 14 chr12 4631797 4632085 -139154370 - AluSx SINE Alu -21 291 6 4483 250 124 40 chr12 4632085 4633319 -139153136 - L1MC1 LINE L1 -2632 3583 2073 957 191 0 0 chr12 4633325 4633482 -139152973 - AluSc SINE Alu -19 290 134 1367 285 126 36 chr12 4633494 4634384 -139152071 - L1MC1 LINE L1 -4318 2078 1109 2472 90 0 0 chr12 4635100 4635410 -139151045 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4635666 4635689 -139150766 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4637177 4637209 -139149246 + (T)n Simple_repeat Simple_repeat 1 32 0 187 302 63 32 chr12 4638405 4638468 -139147987 + MIR SINE MIR 16 80 -182 391 211 79 53 chr12 4638615 4638729 -139147726 - L2 LINE L2 -9 3304 3188 330 333 19 28 chr12 4638894 4639002 -139147453 - MIR3 SINE MIR -25 183 77 3877 19 0 0 chr12 4639127 4639546 -139146909 + L1PA2 LINE L1 5737 6155 0 304 246 0 0 chr12 4639562 4639627 -139146828 + MIR SINE MIR 2 66 -196 225 341 16 39 chr12 4640426 4640555 -139145900 + L2 LINE L2 2970 3095 -177 2399 83 0 3 chr12 4641574 4641875 -139144580 + AluY SINE Alu 1 300 -11 323 262 220 42 chr12 4642250 4642418 -139144037 + MIR SINE MIR 36 233 -29 382 324 72 27 chr12 4642847 4643069 -139143386 + MIR SINE MIR 29 260 -2 1994 118 10 0 chr12 4643736 4644025 -139142430 - AluSx SINE Alu -20 292 1 2565 52 0 0 chr12 4644629 4644936 -139141519 - AluY SINE Alu -4 307 1 279 223 117 68 chr12 4645042 4645145 -139141310 + L2 LINE L2 3205 3312 -1 23 0 0 0 chr12 4645464 4645487 -139140968 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4645929 4646008 -139140447 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4646401 4646442 -139140013 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 331 63 49 chr12 4647922 4648064 -139138391 - L2 LINE L2 -22 3250 3107 408 253 77 45 chr12 4648143 4648332 -139138123 - MIR SINE MIR -50 212 20 854 247 60 8 chr12 4648346 4648581 -139137874 - MIR SINE MIR -3 259 13 1767 106 31 91 chr12 4649353 4649673 -139136782 + AluSx SINE Alu 1 301 -11 433 302 54 27 chr12 4650193 4650342 -139136113 + MER5B DNA MER1_type 1 153 -25 1898 130 17 0 chr12 4651035 4651328 -139135127 + AluSx SINE Alu 1 298 -14 197 372 58 43 chr12 4651689 4651896 -139134559 - L3b LINE CR1 -34 1549 1340 208 181 69 35 chr12 4652356 4652472 -139133983 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4652430 4652564 -139133891 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4652568 4652596 -139133859 + AT_rich Low_complexity Low_complexity 1 28 0 318 278 83 21 chr12 4652615 4652759 -139133696 - L1ME4a LINE L1 -180 5941 5789 194 276 0 11 chr12 4652854 4652941 -139133514 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2363 117 6 0 chr12 4653722 4654072 -139132383 + L1PA16 LINE L1 5811 6162 -4 1469 163 48 7 chr12 4654380 4654650 -139131805 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4654650 4654697 -139131758 + T-rich Low_complexity Low_complexity 1 47 0 1216 14 0 0 chr12 4654698 4654837 -139131618 - L1PA2 LINE L1 0 6155 6017 301 154 0 0 chr12 4654837 4654885 -139131570 + L1MC2 LINE L1 6282 6333 -11 452 101 29 0 chr12 4655110 4655179 -139131276 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4655179 4655231 -139131224 + AT_rich Low_complexity Low_complexity 1 52 0 219 263 53 79 chr12 4655276 4655390 -139131065 + MIR3 SINE MIR 83 193 -15 27 29 0 0 chr12 4655604 4655638 -139130817 + AT_rich Low_complexity Low_complexity 1 34 0 267 137 20 0 chr12 4656785 4656836 -139129619 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4656854 4656884 -139129571 + AT_rich Low_complexity Low_complexity 1 30 0 2109 116 0 0 chr12 4656884 4657185 -139129270 + AluSx SINE Alu 5 305 -7 358 225 92 23 chr12 4657221 4657333 -139129122 - MIR SINE MIR -70 138 20 2394 52 0 0 chr12 4658251 4658541 -139127914 - AluY SINE Alu -21 290 1 474 285 79 15 chr12 4658831 4659036 -139127419 - MIR SINE MIR -41 221 4 291 28 0 0 chr12 4659390 4659426 -139127029 + (TG)n Simple_repeat Simple_repeat 2 37 0 592 286 91 9 chr12 4660047 4660267 -139126188 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4660296 4660339 -139126116 + (TTG)n Simple_repeat Simple_repeat 2 45 0 228 276 53 13 chr12 4660432 4660508 -139125947 + L2 LINE L2 3235 3313 0 1971 72 0 82 chr12 4660829 4661208 -139125247 - AluSc SINE Alu 0 354 1 313 288 0 68 chr12 4661600 4661718 -139124737 - MIR SINE MIR -75 187 78 370 252 99 18 chr12 4661844 4661955 -139124500 + MIR SINE MIR 49 168 -94 675 314 93 64 chr12 4662105 4662555 -139123900 - L2 LINE L2 0 3272 2836 2305 90 0 0 chr12 4662555 4662856 -139123599 + AluSx SINE Alu 1 301 -11 675 314 93 64 chr12 4662856 4663574 -139122881 - L2 LINE L2 -436 2836 2070 494 315 128 0 chr12 4664266 4664517 -139121938 - L2 LINE L2 -1254 2060 1778 1537 161 46 18 chr12 4664791 4665076 -139121379 - AluJb SINE Alu -19 293 1 1852 151 0 0 chr12 4665216 4665494 -139120961 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4665946 4665970 -139120485 + AT_rich Low_complexity Low_complexity 1 24 0 2188 103 0 0 chr12 4666039 4666340 -139120115 + AluY SINE Alu 1 301 -10 1009 220 19 6 chr12 4666356 4666577 -139119878 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4666590 4666642 -139119813 + GA-rich Low_complexity Low_complexity 4 55 0 464 178 0 0 chr12 4666705 4666778 -139119677 - MSTD LTR MaLR -323 73 1 1972 219 62 85 chr12 4666778 4667688 -139118767 - HAL1b LINE L1 -89 1259 371 201 167 0 0 chr12 4667713 4667749 -139118706 - MIR SINE MIR -14 248 213 636 254 113 29 chr12 4667808 4668083 -139118372 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4668153 4668292 -139118163 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4668500 4668582 -139117873 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2009 125 3 13 chr12 4668861 4669164 -139117291 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4669165 4669185 -139117270 + (TA)n Simple_repeat Simple_repeat 1 20 0 743 284 192 22 chr12 4669193 4669552 -139116903 + MLT1H1 LTR MaLR 27 446 -109 6971 98 34 4 chr12 4670920 4671881 -139114574 + THE1B-int LTR MaLR 286 1282 -298 1319 94 94 47 chr12 4671882 4672095 -139114360 + AluY SINE Alu 72 294 -17 2470 77 0 3 chr12 4672095 4672406 -139114049 + THE1B-int LTR MaLR 1271 1580 0 2440 106 19 30 chr12 4672406 4672774 -139113681 + THE1B LTR MaLR 1 364 0 285 274 55 0 chr12 4673618 4673691 -139112764 - MIR SINE MIR -113 149 73 2220 97 0 10 chr12 4673851 4674159 -139112296 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4674274 4674411 -139112044 - MLT1L LTR MaLR 0 615 466 273 243 118 5 chr12 4674412 4674500 -139111955 - MLT1L LTR MaLR -191 391 235 302 246 71 60 chr12 4674788 4674971 -139111484 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4675030 4675052 -139111403 + AT_rich Low_complexity Low_complexity 1 22 0 1349 218 14 7 chr12 4675168 4675453 -139111002 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4675503 4675623 -139110832 + MIR SINE MIR 2 114 -94 2181 98 0 0 chr12 4675667 4675962 -139110493 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4676115 4676271 -139110184 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4676273 4676547 -139109908 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4676558 4676870 -139109585 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4676870 4676920 -139109535 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4677975 4678005 -139108450 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4678006 4678063 -139108392 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4678275 4678312 -139108143 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4679950 4680014 -139106441 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4680031 4680221 -139106234 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4680860 4680907 -139105548 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4680909 4680991 -139105464 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4680997 4681303 -139105152 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4681303 4681360 -139105095 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4681360 4681706 -139104749 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4681707 4682009 -139104446 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4682015 4682116 -139104339 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4682887 4683020 -139103435 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4683159 4683339 -139103116 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4683486 4683796 -139102659 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4683796 4684102 -139102353 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4684102 4684140 -139102315 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4684142 4684194 -139102261 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4684247 4684570 -139101885 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4685468 4686229 -139100226 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4686282 4686355 -139100100 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4686509 4686982 -139099473 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4687027 4687308 -139099147 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4687356 4687493 -139098962 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4687582 4687718 -139098737 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4687946 4688173 -139098282 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4688462 4688494 -139097961 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4688497 4688781 -139097674 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4689642 4689948 -139096507 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4690346 4690441 -139096014 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4690480 4690600 -139095855 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4690784 4691147 -139095308 + MLT1B LTR MaLR 6 379 -11 2215 103 33 0 chr12 4692104 4692406 -139094049 - AluSx SINE Alu 0 312 1 1859 106 41 24 chr12 4692592 4692734 -139093721 - AluSx SINE Alu -14 298 160 2756 123 38 131 chr12 4692734 4693345 -139093110 - MER41C LTR ERV1 0 554 1 1859 106 41 24 chr12 4693345 4693495 -139092960 - AluSx SINE Alu -152 160 1 813 181 0 0 chr12 4693497 4693630 -139092825 - FLAM_C SINE Alu -10 133 1 301 276 52 9 chr12 4693689 4693805 -139092650 + L1MC1 LINE L1 5883 6003 -330 885 194 0 0 chr12 4693860 4694020 -139092435 + AluJb SINE Alu 132 291 -21 242 157 146 79 chr12 4694060 4694149 -139092306 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4694536 4694584 -139091871 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2231 82 4 0 chr12 4694584 4694864 -139091591 - AluSp SINE Alu -32 281 1 2259 100 0 19 chr12 4694867 4695176 -139091279 - AluSx SINE Alu -9 303 1 275 294 154 37 chr12 4695690 4695826 -139090629 + MER5A DNA MER1_type 33 184 -5 * 278 254 18 64 chr12 4695820 4695930 -139090525 + L2 LINE L2 3168 3272 0 2430 77 0 19 chr12 4696855 4697167 -139089288 - AluY SINE Alu -5 306 1 2521 67 0 0 chr12 4697554 4697853 -139088602 + AluY SINE Alu 1 299 -12 1668 158 53 11 chr12 4698834 4699119 -139087336 + AluJb SINE Alu 1 297 -15 211 279 109 73 chr12 4701749 4701914 -139084541 - MIR3 SINE MIR -5 203 33 232 320 39 16 chr12 4702002 4702130 -139084325 + MIR3 SINE MIR 13 143 -65 1768 114 5 152 chr12 4702344 4702739 -139083716 + MER1B DNA MER1_type 1 337 0 1690 158 31 17 chr12 4703545 4703836 -139082619 + AluJo SINE Alu 1 295 -17 467 331 6 0 chr12 4704256 4704413 -139082042 + MIR SINE MIR 78 235 -27 1140 262 108 48 chr12 4705308 4705697 -139080758 + L1MC4a LINE L1 5337 5770 -2038 2121 101 31 3 chr12 4705697 4705985 -139080470 + AluSc SINE Alu 11 306 -3 1140 262 108 48 chr12 4705985 4706152 -139080303 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4706866 4706919 -139079536 + T-rich Low_complexity Low_complexity 1 53 0 203 271 40 66 chr12 4708382 4708533 -139077922 - MIR3 SINE MIR -16 192 46 211 328 26 72 chr12 4710076 4710271 -139076184 - MER5A DNA MER1_type -3 186 1 271 282 0 0 chr12 4711149 4711227 -139075228 + MER69 DNA AcHobo 1 78 -99 531 267 23 8 chr12 4713697 4713828 -139072627 - MIR SINE MIR -106 156 24 519 271 94 6 chr12 4715380 4715550 -139070905 + MIR SINE MIR 21 205 -57 184 287 170 72 chr12 4718207 4718472 -139067983 + L2 LINE L2 2817 3107 -165 3689 271 44 28 chr12 4718876 4720149 -139066306 + L1MEc LINE L1 16 756 -5640 2155 130 3 3 chr12 4720149 4720457 -139065998 + AluSg SINE Alu 1 308 -2 3689 271 44 28 chr12 4720457 4720899 -139065556 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4720885 4721298 -139065157 + L1MC1 LINE L1 5 422 -6004 * 2137 126 152 0 chr12 4721291 4721712 -139064743 + L1MC1 LINE L1 1035 1519 -4907 2040 156 160 76 chr12 4721719 4721864 -139064591 + MER39 LTR ERV1 20 151 -556 2131 113 0 3 chr12 4721864 4722147 -139064308 + AluSx SINE Alu 1 282 -30 2040 156 160 76 chr12 4722147 4722514 -139063941 + MER39 LTR ERV1 151 575 -132 883 118 69 0 chr12 4722516 4722660 -139063795 - L1MCa LINE L1 -4759 1667 1514 256 232 0 18 chr12 4722660 4722716 -139063739 - MER39 LTR ERV1 0 707 653 772 180 77 16 chr12 4722723 4722917 -139063538 + L1MC1 LINE L1 1977 2182 -4244 2398 97 0 3 chr12 4722917 4723227 -139063228 + AluSx SINE Alu 1 309 -3 794 183 0 15 chr12 4723242 4723379 -139063076 + FLAM_C SINE Alu 6 140 -3 11466 221 37 15 chr12 4723410 4725828 -139060627 + L1MC1 LINE L1 2170 4533 -2080 2296 80 3 10 chr12 4725828 4726116 -139060339 + AluSq SINE Alu 9 294 -19 11466 221 37 15 chr12 4726116 4727469 -139058986 + L1MC1 LINE L1 4533 6056 -557 2273 107 3 0 chr12 4727469 4727768 -139058687 + AluSg SINE Alu 1 300 -10 11466 221 37 15 chr12 4727768 4728322 -139058133 + L1MC1 LINE L1 6056 6596 -17 365 255 49 11 chr12 4728346 4728472 -139057983 + L1ME1 LINE L1 1500 1728 -4916 2305 59 52 0 chr12 4728508 4728798 -139057657 + AluY SINE Alu 1 305 -6 2682 182 31 2 chr12 4728890 4729406 -139057049 - L1MA6 LINE L1 0 6300 5770 2161 253 150 15 chr12 4729409 4729421 -139057034 + L1ME1 LINE L1 1874 1883 -4761 2212 69 4 7 chr12 4729421 4729696 -139056759 + AluSc SINE Alu 33 306 -3 2161 253 150 15 chr12 4729696 4730921 -139055534 + L1ME1 LINE L1 1883 3225 -3419 * 2929 221 95 34 chr12 4730919 4731124 -139055331 + L1ME1 LINE L1 4028 4219 -2425 2432 66 0 26 chr12 4731124 4731428 -139055027 - AluY SINE Alu -15 296 1 2929 221 95 34 chr12 4731428 4732142 -139054313 + L1ME1 LINE L1 4219 5003 -1641 1078 229 16 12 chr12 4732152 4732401 -139054054 + MLT2D LTR ERVL 1 250 -164 5726 143 6 28 chr12 4732444 4732766 -139053689 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4732766 4732795 -139053660 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5726 143 6 28 chr12 4732795 4733724 -139052731 + L1MA6 LINE L1 5796 6692 -106 3117 236 33 11 chr12 4733729 4734490 -139051965 + L1MB7 LINE L1 5407 6184 0 818 251 144 0 chr12 4734501 4734772 -139051683 + L1ME1 LINE L1 5114 5423 -1221 1310 205 27 67 chr12 4734780 4735151 -139051304 + MLT1D LTR MaLR 1 356 -149 2886 213 72 57 chr12 4735152 4735275 -139051180 + L1ME1 LINE L1 5555 5675 -989 189 0 0 0 chr12 4735275 4735296 -139051159 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1837 167 0 0 chr12 4735299 4735581 -139050874 - AluSx SINE Alu -30 282 1 2886 213 72 57 chr12 4735581 4736550 -139049905 + L1ME1 LINE L1 5676 6661 -3 250 320 105 32 chr12 4736786 4737005 -139049450 - L3 LINE CR1 -23 1554 1320 213 301 41 0 chr12 4737335 4737408 -139049047 + L3 LINE CR1 1486 1561 -16 453 252 202 38 chr12 4737506 4737768 -139048687 + MLT1L LTR MaLR 311 615 0 2331 188 62 10 chr12 4737845 4738357 -139048098 + MLT1F LTR MaLR 4 542 0 950 242 0 0 chr12 4738672 4738850 -139047605 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4739122 4739162 -139047293 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4739258 4739287 -139047168 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 239 0 0 chr12 4739803 4739849 -139046606 - L2 LINE L2 -88 3184 3139 5461 158 52 61 chr12 4740792 4742149 -139044306 + L1MA8 LINE L1 4187 5535 -743 2455 157 35 27 chr12 4742153 4742748 -139043707 + L1MA8 LINE L1 5683 6280 -11 566 275 185 18 chr12 4742913 4743135 -139043320 - MIR SINE MIR 0 262 4 661 125 19 0 chr12 4743601 4743720 -139042735 + L1MB7 LINE L1 6053 6174 0 240 295 63 53 chr12 4744056 4744151 -139042304 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4744853 4745119 -139041336 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4745193 4745391 -139041064 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4745870 4747160 -139039295 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4747420 4747773 -139038682 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4747969 4748057 -139038398 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4748062 4748404 -139038051 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4748412 4748724 -139037731 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4748724 4749013 -139037442 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4749013 4749132 -139037323 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4749132 4749439 -139037016 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4749439 4749956 -139036499 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4750127 4750638 -139035817 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4751667 4751746 -139034709 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4751747 4751993 -139034462 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4752295 4752856 -139033599 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4752967 4753044 -139033411 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4754749 4754951 -139031504 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4757151 4757186 -139029269 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4759089 4759140 -139027315 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4759140 4759262 -139027193 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4759262 4759626 -139026829 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4760465 4760595 -139025860 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4761017 4761322 -139025133 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4761424 4761445 -139025010 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4761480 4762220 -139024235 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4763145 4763168 -139023287 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4764155 4764728 -139021727 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4765871 4766175 -139020280 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4766395 4766501 -139019954 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4766995 4767073 -139019382 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4767852 4767876 -139018579 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4767876 4768157 -139018298 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4768161 4768583 -139017872 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4768583 4769101 -139017354 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4769101 4769563 -139016892 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4770466 4770659 -139015796 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4770716 4770755 -139015700 + AT_rich Low_complexity Low_complexity 1 39 0 438 78 47 0 chr12 4821633 4821697 -138964758 + LTR56 LTR ERV1 262 328 -117 248 247 123 0 chr12 4822000 4822073 -138964382 + MIR SINE MIR 133 214 -48 586 260 49 29 chr12 4822136 4822340 -138964115 + Charlie8 DNA MER1_type 16 223 -2194 1103 175 200 66 chr12 4822371 4822736 -138963719 - LTR37A LTR ERV1 -1 425 12 267 234 182 0 chr12 4823511 4823588 -138962867 - L2 LINE L2 -2 3311 3221 1001 88 0 0 chr12 4823611 4823736 -138962719 - AluJb SINE Alu -187 125 1 855 107 25 0 chr12 4823807 4823928 -138962527 + MSTB1 LTR MaLR 309 432 0 1427 175 66 84 chr12 4824121 4824185 -138962270 + MER67C LTR ERV1 3 67 -575 2594 155 47 0 chr12 4824185 4824591 -138961864 - MSTA LTR MaLR -3 425 1 1427 175 66 84 chr12 4824591 4824918 -138961537 + MER67C LTR ERV1 67 408 -234 234 313 125 18 chr12 4825264 4825376 -138961079 + MIR SINE MIR 24 147 -115 808 233 56 23 chr12 4825463 4825678 -138960777 - MIR SINE MIR -1 261 40 207 0 0 0 chr12 4826001 4826024 -138960431 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1851 121 0 24 chr12 4826026 4826316 -138960139 - AluSg SINE Alu -27 283 1 5575 42 8 2 chr12 4826800 4827439 -138959016 + SVA Other Other 744 1386 0 1181 167 68 4 chr12 4827521 4827755 -138958700 + L1MA4 LINE L1 6043 6291 -9 477 275 15 8 chr12 4827968 4828099 -138958356 - MER5A DNA MER1_type -3 186 55 214 284 49 39 chr12 4828022 4828124 -138958331 + MER5A DNA MER1_type 69 171 -18 * 518 211 124 103 chr12 4828135 4828241 -138958214 - MER5A DNA MER1_type 0 189 76 1741 164 20 13 chr12 4828241 4828540 -138957915 - AluJo SINE Alu -11 301 1 518 211 124 103 chr12 4828540 4828618 -138957837 - MER5A DNA MER1_type -113 76 1 190 343 45 0 chr12 4828763 4828830 -138957625 - MIR SINE MIR -70 138 69 23 0 0 0 chr12 4829185 4829208 -138957247 + AT_rich Low_complexity Low_complexity 1 23 0 714 286 87 49 chr12 4830886 4831355 -138955100 - L2 LINE L2 -1343 1971 1485 799 195 0 0 chr12 4832121 4832249 -138954206 - FLAM_A SINE Alu -4 129 2 185 282 218 9 chr12 4832736 4832846 -138953609 + L2 LINE L2 1838 1970 -1344 * 395 246 55 0 chr12 4832844 4832954 -138953501 - L2 LINE L2 -5 3308 3193 366 218 0 39 chr12 4833276 4833354 -138953101 + L2 LINE L2 3239 3313 0 931 167 0 0 chr12 4833546 4833678 -138952777 - FLAM_A SINE Alu 0 133 2 1561 159 4 30 chr12 4833683 4833954 -138952501 - AluJo SINE Alu -48 264 1 259 232 203 22 chr12 4834605 4834743 -138951712 - L1ME4a LINE L1 -3 6118 5956 672 274 88 9 chr12 4834785 4835103 -138951352 - L1ME4a LINE L1 -234 5887 5545 37 52 0 0 chr12 4835115 4835173 -138951282 + AT_rich Low_complexity Low_complexity 1 58 0 251 180 126 63 chr12 4835215 4835326 -138951129 - L1ME4a LINE L1 -2336 5472 5355 1185 290 133 51 chr12 4836280 4837194 -138949261 + L2 LINE L2 1008 1996 -1318 3432 212 73 13 chr12 4837326 4838419 -138948036 - L1MB8 LINE L1 -14 6164 5009 25900 92 25 20 chr12 4838445 4844792 -138941663 - L1PA7 LINE L1 0 6469 7 1516 234 133 6 chr12 4844807 4845467 -138940988 - L1MB8 LINE L1 -1123 5023 4259 197 182 247 13 chr12 4846722 4846799 -138939656 - MER5B DNA MER1_type 0 178 84 269 158 35 0 chr12 4847065 4847122 -138939333 + GA-rich Low_complexity Low_complexity 4 62 0 282 183 17 0 chr12 4847400 4847460 -138938995 + MER116 DNA Mariner 1 61 -19 932 176 69 5 chr12 4847467 4847655 -138938800 + MER20 DNA MER1_type 20 219 0 617 286 59 79 chr12 4847661 4848043 -138938412 + L2 LINE L2 2903 3272 0 189 132 0 0 chr12 4848868 4848906 -138937549 + (T)n Simple_repeat Simple_repeat 1 38 0 2371 94 0 0 chr12 4848929 4849226 -138937229 + AluSg SINE Alu 1 297 -13 4164 170 38 31 chr12 4849237 4849407 -138937048 + L1MB2 LINE L1 4383 4550 -1621 936 174 214 86 chr12 4849407 4849758 -138936697 + MSTD LTR MaLR 1 396 0 4164 170 38 31 chr12 4849758 4850635 -138935820 + L1MB2 LINE L1 4550 5449 -722 1541 190 34 17 chr12 4850635 4850930 -138935525 + AluJo SINE Alu 2 301 -11 4164 170 38 31 chr12 4850930 4851620 -138934835 + L1MB2 LINE L1 5449 6132 -39 1386 181 47 4 chr12 4851618 4851894 -138934561 - MLT-int LTR MaLR -76 1659 1372 * 294 312 0 0 chr12 4851954 4852031 -138934424 - MLT-int LTR MaLR -373 1362 1286 279 261 0 0 chr12 4852244 4852309 -138934146 - MLT-int LTR MaLR -993 742 678 2294 193 11 11 chr12 4852421 4852893 -138933562 - MLT1B-int LTR MaLR -640 731 260 708 123 9 0 chr12 4852884 4852998 -138933457 - MLT1B-int LTR MaLR -1256 115 1 * 1539 196 33 48 chr12 4853002 4853394 -138933061 - MLT1B LTR MaLR -4 386 1 225 108 0 0 chr12 4853395 4853432 -138933023 + L1MB3 LINE L1 6140 6176 -7 1404 146 3 24 chr12 4853537 4853822 -138932633 + L1MC2 LINE L1 5785 6062 -282 301 189 122 14 chr12 4853827 4853901 -138932554 - MIR SINE MIR -107 101 20 2536 323 78 44 chr12 4854663 4856399 -138930056 + L2 LINE L2 564 2371 -943 845 230 17 0 chr12 4856399 4856573 -138929882 - MER5B DNA MER1_type -1 177 1 2536 323 78 44 chr12 4856573 4856733 -138929722 + L2 LINE L2 2371 2524 -790 326 318 0 12 chr12 4856782 4856867 -138929588 + L2 LINE L2 3230 3313 0 864 138 0 36 chr12 4857849 4857987 -138928468 + FLAM_C SINE Alu 1 133 0 26 50 0 0 chr12 4857987 4858027 -138928428 + AT_rich Low_complexity Low_complexity 1 40 0 233 325 12 36 chr12 4858248 4858331 -138928124 - L2 LINE L2 -5 3267 3187 213 264 14 42 chr12 4858673 4858745 -138927710 - L3 LINE CR1 -600 977 908 249 292 0 0 chr12 4859679 4859744 -138926711 + GA-rich Low_complexity Low_complexity 3 67 0 341 269 213 6 chr12 4859881 4860041 -138926414 + MIR SINE MIR 29 221 -41 405 238 57 8 chr12 4860799 4860921 -138925534 - MER20B DNA MER1_type -591 192 65 1455 136 136 7 chr12 4861119 4861405 -138925050 - MER33 DNA MER1_type -1 323 1 1140 220 5 0 chr12 4861413 4861631 -138924824 + MER58A DNA MER1_type 1 219 -5 820 307 98 9 chr12 4863231 4863547 -138922908 - L3 LINE CR1 -63 1514 1171 248 291 9 64 chr12 4863935 4864045 -138922410 - MIR SINE MIR -1 261 158 1861 293 181 20 chr12 4864061 4865070 -138921385 - L2 LINE L2 -1220 2094 923 280 270 90 0 chr12 4865072 4865161 -138921294 + MIR SINE MIR 160 256 -6 219 357 83 0 chr12 4865236 4865320 -138921135 - L2 LINE L2 -36 3236 3146 * 267 262 12 24 chr12 4865316 4865400 -138921055 + MIR SINE MIR 180 262 0 29 28 0 0 chr12 4865569 4865605 -138920850 + AT_rich Low_complexity Low_complexity 1 36 0 205 283 0 0 chr12 4865656 4865709 -138920746 + MIR SINE MIR 210 262 0 185 313 75 0 chr12 4866267 4866334 -138920121 + MIR SINE MIR 191 262 0 310 364 29 17 chr12 4866515 4866688 -138919767 - MER5B DNA MER1_type -3 175 1 279 274 97 9 chr12 4867056 4867169 -138919286 - MIR SINE MIR -56 206 84 311 309 111 37 chr12 4867804 4867966 -138918489 - MIR3 SINE MIR -14 194 21 517 276 167 14 chr12 4868131 4868352 -138918103 + L2 LINE L2 2896 3150 -163 826 171 0 0 chr12 4869218 4869347 -138917108 - FLAM_C SINE Alu -3 130 2 279 295 162 46 chr12 4869350 4869523 -138916932 + MIR SINE MIR 20 212 -50 311 197 70 14 chr12 4869585 4869656 -138916799 - MIR3 SINE MIR -7 201 127 2338 93 7 3 chr12 4869656 4869956 -138916499 + AluSx SINE Alu 1 301 -11 2085 114 17 3 chr12 4870060 4870349 -138916106 - AluSx SINE Alu -18 294 2 1232 113 149 9 chr12 4870939 4871368 -138915087 + MER1A DNA MER1_type 1 533 0 2007 138 3 7 chr12 4871812 4872109 -138914346 - AluSx SINE Alu -16 296 1 210 216 0 39 chr12 4872655 4872706 -138913749 - L2 LINE L2 -2 3311 3263 301 300 12 0 chr12 4873174 4873254 -138913201 + MIR3 SINE MIR 109 189 -19 209 321 103 38 chr12 4873885 4874069 -138912386 - L2 LINE L2 0 3313 3118 1079 99 31 31 chr12 4875268 4875430 -138911025 + AluSq SINE Alu 44 205 -108 667 145 73 0 chr12 4875552 4875676 -138910779 + AluSg/x SINE Alu 175 307 -2 494 312 0 48 chr12 4875787 4875973 -138910482 + MER5B DNA MER1_type 2 178 0 3162 57 0 37 chr12 4876570 4876623 -138909832 + L1PA6 LINE L1 5735 5788 -366 2561 68 0 0 chr12 4876623 4876934 -138909521 + AluY SINE Alu 1 311 0 3162 57 0 37 chr12 4876934 4877316 -138909139 + L1PA6 LINE L1 5788 6154 0 190 324 15 15 chr12 4877774 4877842 -138908613 - L2 LINE L2 -850 2464 2397 225 235 0 39 chr12 4878264 4878315 -138908140 - L2 LINE L2 -1 3271 3223 198 138 15 62 chr12 4878855 4878920 -138907535 + (TA)n Simple_repeat Simple_repeat 2 63 0 217 235 20 0 chr12 4879078 4879129 -138907326 - L2 LINE L2 -1 3312 3261 405 196 82 44 chr12 4879132 4879290 -138907165 - LTR41 LTR ERVL -6 767 604 499 159 104 99 chr12 4879387 4879569 -138906886 - LTR41 LTR ERVL -590 183 1 1805 169 21 0 chr12 4879693 4879983 -138906472 + AluJo SINE Alu 1 296 -16 35 24 0 0 chr12 4883426 4883468 -138902987 + AT_rich Low_complexity Low_complexity 1 42 0 726 153 48 16 chr12 4883468 4883592 -138902863 - AluJb SINE Alu -183 129 2 2474 80 0 0 chr12 4883799 4884110 -138902345 + AluY SINE Alu 1 311 0 293 266 39 34 chr12 4884507 4884714 -138901741 - MER31-int LTR ERV1 -3050 1886 1679 430 204 8 15 chr12 4884856 4884988 -138901467 - MER31-int LTR ERV1 -3494 1442 1312 207 69 0 0 chr12 4885116 4885145 -138901310 + (TG)n Simple_repeat Simple_repeat 1 29 0 1249 182 176 6 chr12 4885766 4886118 -138900337 - LTR37A LTR ERV1 -2 424 13 216 0 0 0 chr12 4886251 4886275 -138900180 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 680 313 39 27 chr12 4886294 4886550 -138899905 + MIR SINE MIR 2 260 -2 2105 52 4 0 chr12 4887095 4887366 -138899089 - L1PA13 LINE L1 -5 6158 5887 1035 93 0 7 chr12 4887366 4887517 -138898938 + L1PA13 LINE L1 5734 5883 -280 984 280 4 30 chr12 4887547 4887815 -138898640 + MIR SINE MIR 2 262 0 267 147 27 13 chr12 4890985 4891060 -138895395 + CT-rich Low_complexity Low_complexity 1 76 0 587 243 158 7 chr12 4891374 4891526 -138894929 + MER5A DNA MER1_type 3 177 -12 432 0 0 0 chr12 4892374 4892422 -138894033 + (CA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 4892432 4892457 -138893998 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 4892500 4892521 -138893934 + AT_rich Low_complexity Low_complexity 1 21 0 882 285 118 23 chr12 4892546 4892976 -138893479 - L1ME LINE L1 -327 5794 5406 5604 129 12 3 chr12 4892976 4894690 -138891765 - L1PA14 LINE L1 -2 6159 4409 882 285 118 23 chr12 4894690 4894986 -138891469 - L1ME LINE L1 -715 5406 5028 7414 133 56 2 chr12 4894986 4896154 -138890301 - Tigger3b DNA MER2_type 0 1231 1 882 285 118 23 chr12 4896154 4896231 -138890224 - L1ME LINE L1 -1093 5028 4960 2224 73 52 0 chr12 4896243 4896529 -138889926 - AluSg SINE Alu -9 301 1 407 247 77 29 chr12 4896552 4896722 -138889733 - L1ME LINE L1 -1314 4832 4655 2406 200 44 68 chr12 4896732 4897157 -138889298 - L1MB7 LINE L1 -192 6386 5952 1839 154 13 7 chr12 4897157 4897462 -138888993 - AluJo SINE Alu -5 307 1 2406 200 44 68 chr12 4897462 4897980 -138888475 - L1MB7 LINE L1 -626 5952 5478 1037 205 68 0 chr12 4897980 4898185 -138888270 + MER20 DNA MER1_type 1 219 0 2406 200 44 68 chr12 4898185 4898427 -138888028 - L1MB7 LINE L1 -1100 5478 5232 3891 223 66 42 chr12 4898430 4898970 -138887485 - L1MB7 LINE L1 -3816 2724 2198 2242 114 3 0 chr12 4898970 4899268 -138887187 - AluSx SINE Alu -13 299 1 3891 223 66 42 chr12 4899268 4900167 -138886288 - L1MB7 LINE L1 -4342 2198 1246 333 287 155 0 chr12 4900373 4900502 -138885953 + MIR3 SINE MIR 58 206 -2 574 294 57 40 chr12 4902424 4902672 -138883783 + MLT1K LTR MaLR 330 581 -7 814 291 87 4 chr12 4903343 4903573 -138882882 - MIR SINE MIR -12 250 2 541 312 42 39 chr12 4904584 4904917 -138881538 - L3 LINE CR1 -1 1576 1243 349 314 8 8 chr12 4905082 4905206 -138881249 - L3 LINE CR1 -653 924 801 304 238 152 29 chr12 4905653 4905758 -138880697 - MIR3 SINE MIR -9 199 82 247 312 52 0 chr12 4906166 4906243 -138880212 + MIR SINE MIR 65 145 -117 238 356 20 27 chr12 4907313 4907462 -138878993 - MER5A DNA MER1_type -2 187 40 * 254 359 26 39 chr12 4907335 4907491 -138878964 + MER5A DNA MER1_type 36 189 0 204 345 18 0 chr12 4909535 4909590 -138876865 - MIR SINE MIR -123 85 30 291 261 232 22 chr12 4910125 4910263 -138876192 - MIR3 SINE MIR -36 172 6 1640 215 118 68 chr12 4910289 4910393 -138876062 + Charlie2b DNA MER1_type 1462 1559 -1303 362 19 0 39 chr12 4910393 4910445 -138876010 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 1640 215 118 68 chr12 4910445 4911530 -138874925 + Charlie2b DNA MER1_type 1559 2754 -28 189 0 0 0 chr12 4911532 4911553 -138874902 + (CAA)n Simple_repeat Simple_repeat 1 21 0 854 256 35 0 chr12 4912583 4912786 -138873669 - MIR SINE MIR -24 238 29 249 268 0 37 chr12 4914363 4914445 -138872010 + A-rich Low_complexity Low_complexity 2 80 0 315 0 0 0 chr12 4914827 4914862 -138871593 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr12 4914937 4914969 -138871486 + AT_rich Low_complexity Low_complexity 1 32 0 450 265 201 31 chr12 4914985 4915497 -138870958 - L1ME4a LINE L1 -11 6110 5520 352 256 13 0 chr12 4915590 4915668 -138870787 + MER21B LTR ERV1 12 90 -773 1588 235 145 9 chr12 4915690 4916124 -138870331 + MER21B LTR ERV1 19 511 -352 368 274 142 0 chr12 4916307 4916420 -138870035 + L2 LINE L2 3137 3265 -7 422 291 20 33 chr12 4916730 4916881 -138869574 - MIR3 SINE MIR -13 195 47 216 297 0 14 chr12 4917081 4917155 -138869300 + L2 LINE L2 2978 3050 -222 198 0 0 0 chr12 4917446 4917468 -138868987 + (A)n Simple_repeat Simple_repeat 1 22 0 361 320 122 12 chr12 4918132 4918379 -138868076 - Charlie8 DNA MER1_type -2143 274 1 828 179 8 0 chr12 4918521 4918644 -138867811 - FLAM_C SINE Alu -9 124 1 2112 98 0 80 chr12 4918655 4918981 -138867474 - AluSx SINE Alu -12 300 1 356 315 139 12 chr12 4920833 4920998 -138865457 + MIR3 SINE MIR 16 201 -7 340 305 21 0 chr12 4921295 4921390 -138865065 + MIR3 SINE MIR 90 186 -22 183 278 0 0 chr12 4921685 4921721 -138864734 + L2 LINE L2 3103 3138 -134 1972 115 40 0 chr12 4922215 4922493 -138863962 + AluSq SINE Alu 1 289 -24 226 271 29 14 chr12 4922574 4922644 -138863811 + Charlie4 DNA MER1_type 1888 1958 -3 367 236 292 14 chr12 4922683 4922827 -138863628 + MER5A DNA MER1_type 4 187 -2 258 181 138 60 chr12 4923884 4924000 -138862455 + L3 LINE CR1 793 917 -660 609 279 94 35 chr12 4924256 4924575 -138861880 + L3 LINE CR1 1043 1380 -197 2027 229 122 18 chr12 4924767 4925388 -138861067 + MER76 LTR ERV 3 688 0 582 274 28 22 chr12 4926603 4926782 -138859673 + MIR SINE MIR 48 227 -35 191 187 55 66 chr12 4926795 4926886 -138859569 - L3b LINE CR1 -171 1412 1323 3808 107 71 0 chr12 4926968 4927520 -138858935 + L1MA2 LINE L1 5714 6304 0 916 199 0 11 chr12 4928505 4928686 -138857769 + FRAM SINE Alu 1 171 -5 275 232 0 0 chr12 4928709 4928765 -138857690 - MER113 DNA MER1_type? -462 59 4 614 254 129 0 chr12 4929683 4929876 -138856579 + MIR SINE MIR 6 223 -39 345 24 0 0 chr12 4929991 4930033 -138856422 + (TG)n Simple_repeat Simple_repeat 2 43 0 1481 152 118 37 chr12 4930531 4930801 -138855654 - AluJo SINE Alu -6 296 5 3218 28 3 0 chr12 4930956 4931315 -138855140 - L1PA4 LINE L1 -8 6147 5788 2565 63 0 0 chr12 4931884 4932186 -138854269 + AluY SINE Alu 1 302 -9 185 216 0 39 chr12 4932382 4932433 -138854022 - L3 LINE CR1 -3 1574 1526 * 220 221 39 78 chr12 4932421 4932498 -138853957 - L2 LINE L2 0 3272 3199 262 224 79 26 chr12 4932505 4932581 -138853874 + MER5A DNA MER1_type 108 187 -2 1295 100 0 0 chr12 4933044 4933214 -138853241 + AluSq SINE Alu 1 170 -143 711 162 0 0 chr12 4933498 4933603 -138852852 + AluSg/x SINE Alu 178 282 -30 327 104 0 0 chr12 4934252 4934300 -138852155 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 2166 65 25 4 chr12 4934300 4934577 -138851878 - AluSp SINE Alu -30 283 1 1576 127 4 0 chr12 4934694 4934923 -138851532 + Tigger4(Zombi) DNA MER2_type 2502 2731 0 235 204 0 20 chr12 4934952 4935001 -138851454 + GA-rich Low_complexity Low_complexity 2 49 0 385 329 48 6 chr12 4936665 4936832 -138849623 - MIR3 SINE MIR -28 180 7 233 266 62 0 chr12 4937118 4937182 -138849273 + L2 LINE L2 2933 3000 -313 211 284 189 24 chr12 4937367 4937406 -138849049 + L2 LINE L2 3084 3115 -157 2377 92 3 0 chr12 4937406 4937744 -138848711 - AluSc SINE Alu 0 309 1 211 284 189 24 chr12 4937744 4937831 -138848624 + L2 LINE L2 3115 3231 -41 301 313 9 35 chr12 4937907 4938022 -138848433 + MIR SINE MIR 20 131 -131 567 258 58 111 chr12 4938037 4938604 -138847851 + L1MC2 LINE L1 700 1236 -4883 231 286 202 0 chr12 4938571 4938739 -138847716 + L1M4 LINE L1 4998 5199 -930 * 5583 188 36 16 chr12 4938744 4939370 -138847085 + L1MC2 LINE L1 4271 4883 -1444 694 203 31 8 chr12 4939370 4939498 -138846957 + FLAM_A SINE Alu 1 131 -2 5583 188 36 16 chr12 4939498 4940868 -138845587 + L1MC2 LINE L1 4883 6307 -20 1012 278 33 68 chr12 4940849 4941130 -138845325 + L1ME LINE L1 5166 5455 -723 * 2116 108 0 11 chr12 4941130 4941416 -138845039 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr12 4941416 4941439 -138845016 + (CA)n Simple_repeat Simple_repeat 2 24 0 1012 278 33 68 chr12 4941439 4941719 -138844736 + L1ME LINE L1 5454 5700 -478 2011 131 0 7 chr12 4941719 4942010 -138844445 + AluSx SINE Alu 1 289 -23 1012 278 33 68 chr12 4942010 4942110 -138844345 + L1ME LINE L1 5700 5802 -376 2419 84 0 0 chr12 4942486 4942795 -138843660 - AluY SINE Alu -2 309 1 21 0 0 0 chr12 4942876 4942897 -138843558 + AT_rich Low_complexity Low_complexity 1 21 0 305 307 0 40 chr12 4942957 4943058 -138843397 + MIR SINE MIR 56 152 -110 200 292 143 6 chr12 4943927 4944088 -138842367 - MIR SINE MIR -6 256 74 2368 58 0 45 chr12 4944144 4944455 -138842000 + AluY SINE Alu 1 297 -14 245 222 321 12 chr12 4944462 4944543 -138841912 - MER5B DNA MER1_type -72 106 1 341 234 99 63 chr12 4944650 4944761 -138841694 + L2 LINE L2 3199 3313 0 267 368 8 0 chr12 4944777 4944894 -138841561 - L2 LINE L2 -5 3308 3191 851 136 35 0 chr12 4944896 4945065 -138841390 - MER33 DNA MER1_type 0 324 150 194 114 0 23 chr12 4945105 4945149 -138841306 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 424 213 200 27 chr12 4945152 4945302 -138841153 - MER33 DNA MER1_type -148 176 1 231 224 104 0 chr12 4945342 4945409 -138841046 - L2 LINE L2 -235 3078 3005 33 66 0 0 chr12 4946015 4946076 -138840379 + AT_rich Low_complexity Low_complexity 1 61 0 1774 155 41 10 chr12 4946474 4946648 -138839807 - AluJb SINE Alu -8 304 116 408 40 0 0 chr12 4946648 4946698 -138839757 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1774 155 41 10 chr12 4946698 4946814 -138839641 - AluJb SINE Alu -196 116 5 903 109 0 0 chr12 4946978 4947097 -138839358 + FLAM_C SINE Alu 1 119 -24 442 258 39 62 chr12 4947134 4947312 -138839143 + MIR SINE MIR 49 222 -40 2459 88 0 0 chr12 4948053 4948360 -138838095 + AluSp SINE Alu 1 307 -6 237 328 52 72 chr12 4950552 4950802 -138835653 - L2 LINE L2 -684 2630 2386 2255 98 0 10 chr12 4950814 4951111 -138835344 + AluSx SINE Alu 5 298 -14 482 257 37 93 chr12 4951160 4951374 -138835081 + MIR3 SINE MIR 1 202 -6 353 344 31 0 chr12 4951997 4952125 -138834330 - L2 LINE L2 -4 3268 3137 32 57 0 0 chr12 4952402 4952455 -138834000 + AT_rich Low_complexity Low_complexity 1 53 0 572 149 0 9 chr12 4952466 4952580 -138833875 - L1MA4 LINE L1 -149 6151 6039 843 326 70 56 chr12 4952653 4953312 -138833143 - L3 LINE CR1 -4 1573 906 583 157 37 9 chr12 4954863 4954971 -138831484 + AluSq/x SINE Alu 1 111 -201 2387 56 0 0 chr12 4955002 4955289 -138831166 + AluSc SINE Alu 23 309 0 184 316 167 47 chr12 4955414 4955689 -138830766 - L2 LINE L2 -161 3111 2804 216 338 198 9 chr12 4955729 4956052 -138830403 - L2 LINE L2 -581 2733 2350 28 0 0 0 chr12 4958427 4958455 -138828000 + AT_rich Low_complexity Low_complexity 1 28 0 863 293 30 19 chr12 4958675 4958945 -138827510 + Charlie8 DNA MER1_type 4 276 -2141 182 400 43 14 chr12 4959490 4959630 -138826825 - L2 LINE L2 -338 2976 2833 719 232 98 31 chr12 4959912 4960166 -138826289 + L1ME4a LINE L1 5603 5873 -248 544 264 121 25 chr12 4960524 4960763 -138825692 - MIR SINE MIR 0 262 1 330 256 259 41 chr12 4961038 4961405 -138825050 - L2 LINE L2 -339 2975 2529 1184 180 0 9 chr12 4961697 4961908 -138824547 + MER3 DNA MER1_type 1 209 0 1774 173 90 22 chr12 4962254 4962654 -138823801 + MLT1D LTR MaLR 1 427 -78 466 315 43 16 chr12 4963217 4963401 -138823054 + MIR SINE MIR 23 211 -51 696 239 22 22 chr12 4963905 4964089 -138822366 + MIR SINE MIR 77 260 -2 24 53 0 0 chr12 4964546 4964584 -138821871 + AT_rich Low_complexity Low_complexity 1 38 0 272 177 146 52 chr12 4964642 4964738 -138821717 - L1ME4a LINE L1 -18 6103 5999 551 217 108 43 chr12 4964796 4965073 -138821382 - L1MC5 LINE L1 -46 7915 7621 389 266 28 37 chr12 4965080 4965227 -138821228 - L1MC5 LINE L1 -445 7516 7370 2337 97 3 0 chr12 4965227 4965525 -138820930 - AluSx SINE Alu -13 299 1 389 266 28 37 chr12 4965525 4965595 -138820860 - L1MC5 LINE L1 -591 7370 7301 2014 161 0 0 chr12 4965799 4966110 -138820345 + AluSx SINE Alu 1 311 -1 900 124 7 15 chr12 4966773 4966910 -138819545 - L1M3 LINE L1 -424 5747 5612 939 165 60 22 chr12 4966911 4967093 -138819362 - MER46A DNA MER2_type -1 235 47 392 274 78 0 chr12 4967158 4967260 -138819195 + L2 LINE L2 3202 3311 -2 24 53 0 0 chr12 4967339 4967377 -138819078 + AT_rich Low_complexity Low_complexity 1 38 0 202 295 65 36 chr12 4967442 4967581 -138818874 + L2 LINE L2 2701 2843 -471 223 421 19 0 chr12 4967642 4967749 -138818706 + L2 LINE L2 2942 3050 -222 21 0 0 0 chr12 4968534 4968555 -138817900 + AT_rich Low_complexity Low_complexity 1 21 0 646 299 56 21 chr12 4968793 4969027 -138817428 + MIR SINE MIR 7 248 -14 1819 160 14 0 chr12 4969375 4969668 -138816787 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr12 4970826 4970855 -138815600 + AT_rich Low_complexity Low_complexity 1 29 0 244 220 68 17 chr12 4970878 4970937 -138815518 - L2 LINE L2 -9 3263 3202 5049 144 45 9 chr12 4971144 4972098 -138814357 - L1MB7 LINE L1 0 6184 5196 2160 116 7 3 chr12 4973378 4973679 -138812776 + AluSq SINE Alu 1 302 -11 41 66 0 0 chr12 4974920 4974996 -138811459 + AT_rich Low_complexity Low_complexity 1 76 0 1390 133 69 9 chr12 4975430 4975648 -138810807 - MER46A DNA MER2_type -5 231 1 1086 202 32 9 chr12 4975757 4975975 -138810480 - Charlie1a DNA MER1_type -907 548 326 1373 227 42 30 chr12 4976093 4976423 -138810032 - Charlie1a DNA MER1_type -1121 334 1 1346 297 95 25 chr12 4976444 4977056 -138809399 + L2 LINE L2 2306 2960 -354 280 277 89 30 chr12 4977311 4977412 -138809043 + MIR SINE MIR 6 112 -150 858 257 50 20 chr12 4978658 4978958 -138807497 - L1ME3 LINE L1 -264 5898 5590 342 338 81 68 chr12 4979253 4979891 -138806564 - L2 LINE L2 -8 3264 2622 26 50 0 0 chr12 4980914 4980954 -138805501 + AT_rich Low_complexity Low_complexity 1 40 0 473 296 45 75 chr12 4981242 4981345 -138805110 - MIR3 SINE MIR -10 198 102 791 232 27 16 chr12 4981345 4981530 -138804925 + MER5A DNA MER1_type 1 187 -2 473 296 45 75 chr12 4981530 4981625 -138804830 - MIR3 SINE MIR -106 102 6 1881 158 3 7 chr12 4982038 4982336 -138804119 + AluJb SINE Alu 3 299 -13 908 139 61 11 chr12 4982821 4983001 -138803454 + MER53 DNA DNA 1 189 0 301 213 106 0 chr12 4983104 4983198 -138803257 - HsTC2 DNA Tc2 0 1900 1797 342 342 84 8 chr12 4983224 4983461 -138802994 - L2 LINE L2 -1366 1948 1694 768 322 162 37 chr12 4983471 4984204 -138802251 - L2 LINE L2 -1731 1583 759 1698 144 101 15 chr12 4984208 4984532 -138801923 - MER83 LTR ERV1 0 448 97 1146 74 217 0 chr12 4984532 4984721 -138801734 + MER30 DNA MER1_type 1 230 0 851 39 0 0 chr12 4984723 4984825 -138801630 - MER83 LTR ERV1 -346 102 1 314 315 39 62 chr12 4984837 4985097 -138801358 - L2 LINE L2 -2571 743 490 634 263 202 3 chr12 4987133 4987360 -138799095 - MIR SINE MIR -11 251 1 390 21 0 0 chr12 4987795 4987842 -138798613 + (TG)n Simple_repeat Simple_repeat 2 48 0 2345 98 0 0 chr12 4989884 4990179 -138796276 - AluSx SINE Alu -17 295 1 931 201 31 35 chr12 4990347 4990576 -138795879 - L1ME3A LINE L1 -5 6165 5938 22 0 0 0 chr12 4991045 4991067 -138795388 + AT_rich Low_complexity Low_complexity 1 22 0 244 264 107 14 chr12 4991805 4991945 -138794510 - L2 LINE L2 -71 3242 3090 237 269 0 125 chr12 4992208 4992312 -138794143 + L2 LINE L2 3182 3272 0 316 238 75 0 chr12 4992517 4992597 -138793858 - MER112 DNA MER1_type -174 86 1 361 102 65 32 chr12 4992642 4992705 -138793750 + AluSp/q SINE Alu 234 295 -8 5579 41 2 5 chr12 4992764 4993397 -138793058 - L1PA5 LINE L1 0 6154 5524 501 198 52 13 chr12 4993619 4993751 -138792704 - L1ME1 LINE L1 0 7129 6836 2460 195 67 27 chr12 4993761 4994325 -138792130 - L1ME1 LINE L1 -205 6756 6170 1291 177 59 20 chr12 4994331 4994504 -138791951 - L1ME1 LINE L1 -839 6102 5910 1755 174 48 3 chr12 4994504 4994820 -138791635 - L1MC1 LINE L1 -3 6330 6001 1291 177 59 20 chr12 4994820 4994951 -138791504 - L1ME1 LINE L1 -1031 5910 5786 180 0 0 0 chr12 4995021 4995041 -138791414 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 278 242 0 0 chr12 4995041 4995103 -138791352 - L1ME1 LINE L1 -2458 4483 4422 607 218 82 20 chr12 4995130 4995356 -138791099 - L1ME1 LINE L1 -4887 1536 1326 2120 100 0 31 chr12 4995371 4995660 -138790795 - AluSg SINE Alu -30 280 1 323 217 152 0 chr12 4995662 4995754 -138790701 - L1ME1 LINE L1 -5072 1351 1246 1135 93 20 0 chr12 4995960 4996110 -138790345 - L1PB1 LINE L1 0 6151 5999 575 260 60 89 chr12 4996131 4996446 -138790009 - L1ME1 LINE L1 -5267 1156 851 1666 199 65 3 chr12 4996452 4996804 -138789651 - L1ME1 LINE L1 -5954 469 96 1505 144 129 8 chr12 4996804 4997068 -138789387 - MER1B DNA MER1_type 0 339 44 30 0 0 0 chr12 4998015 4998045 -138788410 + AT_rich Low_complexity Low_complexity 1 30 0 865 136 0 0 chr12 4998045 4998163 -138788292 - FLAM_C SINE Alu -25 118 1 264 30 0 0 chr12 4998999 4999032 -138787423 + (TC)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr12 4999031 4999054 -138787401 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 23 86 0 0 chr12 4999117 4999175 -138787280 + AT_rich Low_complexity Low_complexity 1 58 0 3831 94 37 2 chr12 4999859 5000378 -138786077 - L1PA11 LINE L1 0 6174 5638 3282 169 77 29 chr12 5000773 5001475 -138784980 - L1MA9 LINE L1 -1 6311 5576 1112 31 0 8 chr12 5001644 5001773 -138784682 - L1PA3 LINE L1 0 6155 6028 216 67 0 0 chr12 5001831 5001861 -138784594 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 43634 32 26 2 chr12 5001861 5007843 -138778612 - L1PA2 LINE L1 -24 6131 1 2118 144 3 0 chr12 5007969 5008275 -138778180 - AluSx SINE Alu -4 308 2 1189 262 42 42 chr12 5008873 5009304 -138777151 - L1MC4a LINE L1 -1842 5966 5536 1453 146 106 17 chr12 5010518 5010819 -138775636 - LTR56 LTR ERV1 -117 328 1 2378 86 3 3 chr12 5010931 5011234 -138775221 + AluSp SINE Alu 1 303 -10 202 315 63 45 chr12 5011390 5011501 -138774954 - MIR SINE MIR -142 120 8 2429 146 3 11 chr12 5012201 5012570 -138773885 - MER47A DNA MER2_type 0 366 1 488 270 117 0 chr12 5012750 5012913 -138773542 - L1ME LINE L1 -404 5717 5536 4033 187 71 35 chr12 5013184 5013230 -138773225 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 5013230 5013279 -138773176 + (TG)n Simple_repeat Simple_repeat 2 50 0 4033 187 71 35 chr12 5013279 5013681 -138772774 - MER21B LTR ERV1 -75 788 402 3151 108 35 15 chr12 5013681 5013704 -138772751 + MER4C LTR ERV1 1 22 -443 2447 87 0 3 chr12 5013704 5014015 -138772440 + AluY SINE Alu 1 310 -1 3151 108 35 15 chr12 5014015 5014446 -138772009 + MER4C LTR ERV1 22 464 -1 4033 187 71 35 chr12 5014446 5014706 -138771749 - MER21B LTR ERV1 -461 402 87 1587 161 113 0 chr12 5014706 5014980 -138771475 + AluJb SINE Alu 2 306 -6 4033 187 71 35 chr12 5014980 5015071 -138771384 - MER21B LTR ERV1 -776 87 1 1010 258 16 12 chr12 5015382 5015638 -138770817 + MIR SINE MIR 6 262 0 462 319 126 40 chr12 5015919 5016687 -138769768 - L2 LINE L2 -5 3267 2365 227 336 26 0 chr12 5016735 5016848 -138769607 + L1ME LINE L1 5352 5467 -654 666 0 0 0 chr12 5017605 5017679 -138768776 + (CCA)n Simple_repeat Simple_repeat 2 75 0 271 229 0 0 chr12 5018064 5018125 -138768330 - L1ME LINE L1 -520 5644 5584 * 441 226 105 0 chr12 5018120 5018184 -138768271 - L1ME LINE L1 -3485 2661 2605 2797 192 79 29 chr12 5018184 5018778 -138767677 + MLT1E2 LTR MaLR 1 624 -2 441 226 105 0 chr12 5018778 5018894 -138767561 - L1ME LINE L1 -3541 2605 2462 881 159 0 14 chr12 5018936 5019081 -138767374 - FLAM_C SINE Alu 0 143 1 2425 154 130 0 chr12 5019082 5019497 -138766958 - LTR44 LTR ERV1 -26 493 25 2325 85 7 0 chr12 5019499 5019792 -138766663 + AluSg SINE Alu 1 295 -15 733 192 6 144 chr12 5019834 5020086 -138766369 - L1ME LINE L1 -3680 2466 2264 1083 133 0 0 chr12 5020086 5020236 -138766219 + L1PA15 LINE L1 6013 6162 -3 733 192 6 144 chr12 5020236 5020296 -138766159 - L1ME LINE L1 -3882 2264 2197 511 184 0 0 chr12 5020304 5020391 -138766064 - MER58B DNA MER1_type 0 341 255 2717 166 127 31 chr12 5020425 5020514 -138765941 + L1MCa LINE L1 7 86 -6340 2444 75 0 3 chr12 5020514 5020822 -138765633 + AluSg SINE Alu 1 307 -3 2717 166 127 31 chr12 5020822 5021305 -138765150 + L1MCa LINE L1 86 634 -5792 4613 149 27 20 chr12 5021324 5022187 -138764268 + L1MCa LINE L1 834 1794 -4632 7728 219 31 77 chr12 5022198 5024086 -138762369 + L1MCa LINE L1 2684 4657 -1769 1454 35 0 99 chr12 5024086 5024288 -138762167 + L1PA3 LINE L1 5974 6155 0 7728 219 31 77 chr12 5024288 5024843 -138761612 + L1MCa LINE L1 4657 5010 -1416 2197 122 0 19 chr12 5024843 5025155 -138761300 - AluSx SINE Alu -6 306 1 7728 219 31 77 chr12 5025155 5025242 -138761213 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 5025587 5025616 -138760839 + (CAA)n Simple_repeat Simple_repeat 2 30 0 383 349 42 12 chr12 5026268 5026434 -138760021 + MIR SINE MIR 86 256 -6 574 198 127 24 chr12 5026548 5026674 -138759781 - FLAM_A SINE Alu -3 139 1 276 267 20 30 chr12 5027373 5027474 -138758981 - L1ME4a LINE L1 -55 6066 5967 608 222 2 19 chr12 5027540 5027680 -138758775 - L1MD3 LINE L1 -1109 6883 6717 381 75 0 0 chr12 5028727 5028780 -138757675 + (TG)n Simple_repeat Simple_repeat 2 54 0 1447 185 24 31 chr12 5028780 5029067 -138757388 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 5029108 5029305 -138757150 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 5029381 5029479 -138756976 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 5029560 5029677 -138756778 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 5029677 5029983 -138756472 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 5029988 5030015 -138756440 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 5030071 5030101 -138756354 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 5030245 5030416 -138756039 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 5030617 5030640 -138755815 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 5030851 5030989 -138755466 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 5031115 5031262 -138755193 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 5031260 5031977 -138754478 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 5031977 5032299 -138754156 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 5032299 5032774 -138753681 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 5032774 5033068 -138753387 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 5033068 5033089 -138753366 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 5033089 5033221 -138753234 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 5033221 5034116 -138752339 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 5034118 5034433 -138752022 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 5035484 5036070 -138750385 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 5036707 5037676 -138748779 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 5037772 5037929 -138748526 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 5038290 5038510 -138747945 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 5039345 5039652 -138746803 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 5040338 5040426 -138746029 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 5040486 5040546 -138745909 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 5040884 5041017 -138745438 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 5040929 5041024 -138745431 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 5041027 5041330 -138745125 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 5041587 5041709 -138744746 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 5042590 5042651 -138743804 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 5042651 5042705 -138743750 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 5042812 5044637 -138741818 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 5044623 5046332 -138740123 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 5046332 5046612 -138739843 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 5046612 5047327 -138739128 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 5047361 5047533 -138738922 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 5047888 5047954 -138738501 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 5048057 5048123 -138738332 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048226 5048292 -138738163 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048395 5048461 -138737994 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 5048564 5048766 -138737689 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 5049240 5049460 -138736995 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 5049551 5049615 -138736840 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 5049616 5049655 -138736800 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 5049797 5049928 -138736527 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 5050072 5050196 -138736259 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 5050625 5051634 -138734821 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 5051805 5051852 -138734603 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 5051826 5051874 -138734581 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 5052046 5052088 -138734367 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 5052101 5052565 -138733890 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 5052565 5053086 -138733369 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 5053086 5053473 -138732982 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 5053473 5053521 -138732934 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 5053526 5053568 -138732887 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 5053598 5054063 -138732392 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 5054070 5054141 -138732314 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 5054173 5054230 -138732225 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 5054596 5054627 -138731828 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 5054937 5055108 -138731347 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 5055129 5055443 -138731012 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 5055676 5055876 -138730579 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 5055874 5055901 -138730554 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 5055901 5056200 -138730255 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 5056200 5056391 -138730064 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 5056482 5056617 -138729838 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 5056932 5057028 -138729427 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 5057488 5057638 -138728817 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 5057895 5057959 -138728496 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 5058492 5058623 -138727832 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 5059067 5059255 -138727200 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 5059712 5059747 -138726708 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 5060337 5060522 -138725933 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 5061470 5061548 -138724907 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 5062253 5062388 -138724067 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 5062550 5065655 -138720800 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 5065655 5066339 -138720116 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 5066339 5066761 -138719694 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 5066757 5071155 -138715300 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 5071284 5071564 -138714891 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 5071768 5071868 -138714587 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 5071872 5071931 -138714524 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 5072338 5072717 -138713738 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 5072863 5073214 -138713241 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5073865 5073907 -138712548 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5073920 5073984 -138712471 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5074083 5074115 -138712340 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5074114 5074154 -138712301 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5074253 5074552 -138711903 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5074968 5075023 -138711432 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5075490 5076046 -138710409 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5076770 5076998 -138709457 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5077085 5077200 -138709255 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5078252 5078681 -138707774 - MER57B LTR ERV1 0 434 1 2450 72 0 28 chr12 5080008 5080328 -138706127 - AluY SINE Alu 0 311 1 245 233 50 0 chr12 5080469 5080529 -138705926 - MIR SINE MIR -107 101 39 216 0 0 0 chr12 5080829 5080853 -138705602 + (T)n Simple_repeat Simple_repeat 1 24 0 316 143 54 0 chr12 5081036 5081133 -138705322 - AluSg SINE Alu 0 321 222 1603 115 34 26 chr12 5081312 5081546 -138704909 - AluSg SINE Alu -73 237 2 519 327 12 0 chr12 5081774 5081939 -138704516 + MIR SINE MIR 95 261 -1 427 282 107 43 chr12 5081985 5082265 -138704190 + L3 LINE CR1 799 1096 -481 616 310 99 58 chr12 5082484 5082878 -138703577 + L2 LINE L2 2862 3271 -1 420 305 17 77 chr12 5082944 5083177 -138703278 + L3 LINE CR1 1267 1485 -92 209 329 13 0 chr12 5083306 5083385 -138703070 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5083464 5083489 -138702966 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5083841 5083869 -138702586 + AT_rich Low_complexity Low_complexity 1 28 0 412 276 85 92 chr12 5084725 5085159 -138701296 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5085163 5085213 -138701242 + AT_rich Low_complexity Low_complexity 1 50 0 2275 112 0 10 chr12 5085493 5085807 -138700648 + AluSx SINE Alu 1 311 -1 454 333 86 25 chr12 5086013 5086211 -138700244 - MIR SINE MIR -5 257 48 339 321 28 0 chr12 5087292 5087398 -138699057 - MIR SINE MIR -128 134 26 2915 212 107 26 chr12 5089466 5090345 -138696110 + L1MC4a LINE L1 5329 5535 -643 1035 205 107 29 chr12 5090361 5090605 -138695850 + L1MC4 LINE L1 6754 7016 -1026 * 2376 173 60 24 chr12 5090603 5091101 -138695354 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5091110 5091183 -138695272 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 511 164 100 79 chr12 5091194 5091334 -138695121 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5093295 5094117 -138692338 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5097654 5097877 -138688578 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5097877 5098174 -138688281 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5098174 5098461 -138687994 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5098856 5099064 -138687391 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5099154 5099285 -138687170 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5099361 5099576 -138686879 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5099877 5099912 -138686543 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5100526 5100619 -138685836 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5100652 5101024 -138685431 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5101084 5101405 -138685050 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5101446 5101566 -138684889 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5101974 5102120 -138684335 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5102120 5102549 -138683906 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5102571 5102645 -138683810 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5102648 5102681 -138683774 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5104276 5104386 -138682069 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5104558 5104719 -138681736 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5105050 5105353 -138681102 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5105415 5105793 -138680662 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5105853 5106005 -138680450 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5106005 5106133 -138680322 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5106133 5106468 -138679987 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5106468 5107585 -138678870 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5107585 5108086 -138678369 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5108086 5108285 -138678170 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5108285 5108366 -138678089 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5108433 5108622 -138677833 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5108622 5108759 -138677696 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5109059 5109141 -138677314 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5109311 5109427 -138677028 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5110083 5110158 -138676297 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5110289 5110356 -138676099 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5110362 5110572 -138675883 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5110604 5110650 -138675805 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5110686 5111100 -138675355 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5111133 5111273 -138675182 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5112120 5112283 -138674172 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5114098 5114157 -138672298 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5114361 5114479 -138671976 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5114558 5114722 -138671733 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5114998 5115065 -138671390 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5115188 5115367 -138671088 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5115368 5115539 -138670916 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5115947 5116327 -138670128 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5117959 5118255 -138668200 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5118297 5118702 -138667753 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5119280 5119312 -138667143 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5119908 5119932 -138666523 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5120215 5121131 -138665324 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5121131 5121418 -138665037 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5121418 5121735 -138664720 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5122891 5123023 -138663432 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5123900 5123957 -138662498 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5128598 5128622 -138657833 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5128690 5128822 -138657633 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5130499 5130660 -138655795 + CT-rich Low_complexity Low_complexity 1 162 0 248 254 120 74 chr12 5131008 5131225 -138655230 + L3b LINE CR1 1115 1341 -242 262 239 0 57 chr12 5131424 5131512 -138654943 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5131726 5131783 -138654672 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5132111 5132148 -138654307 + AT_rich Low_complexity Low_complexity 1 37 0 299 383 25 41 chr12 5133696 5133892 -138652563 + MIR SINE MIR 20 212 -50 189 0 0 0 chr12 5134081 5134102 -138652353 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 209 146 21 0 chr12 5134426 5134474 -138651981 + (TTA)n Simple_repeat Simple_repeat 3 51 0 407 319 135 5 chr12 5134480 5134665 -138651790 - MIR SINE MIR -12 250 42 527 274 128 0 chr12 5135411 5135575 -138650880 + MIR SINE MIR 8 192 -70 371 303 29 67 chr12 5135585 5135749 -138650706 + MIR SINE MIR 6 161 -65 875 300 130 26 chr12 5135918 5136602 -138649853 - L2 LINE L2 -4 3309 2549 842 272 98 0 chr12 5137486 5137710 -138648745 - MIR SINE MIR -1 261 16 223 324 78 0 chr12 5138358 5138460 -138647995 + L2 LINE L2 2687 2796 -518 419 266 106 55 chr12 5138859 5139058 -138647397 + MLT1K LTR MaLR 363 571 -17 227 252 154 21 chr12 5139349 5139492 -138646963 - LTR33 LTR ERVL -163 358 197 435 218 0 0 chr12 5139709 5139796 -138646659 + LTR33 LTR ERVL 434 520 -1 202 250 125 0 chr12 5139937 5140001 -138646454 - MIR SINE MIR -103 105 34 612 291 23 0 chr12 5140421 5140593 -138645862 + MIR3 SINE MIR 30 205 -3 1757 195 58 6 chr12 5140905 5141249 -138645206 + MLT1A1 LTR MaLR 1 362 -3 209 275 38 25 chr12 5142809 5142889 -138643566 + GA-rich Low_complexity Low_complexity 4 84 0 * 300 329 153 14 chr12 5142843 5142977 -138643478 + HAL1 LINE L1 1106 1220 -1287 228 254 0 0 chr12 5142977 5143036 -138643419 + A-rich Low_complexity Low_complexity 1 59 0 300 329 153 14 chr12 5143036 5143059 -138643396 + HAL1 LINE L1 1220 1351 -1156 181 388 104 0 chr12 5143156 5143290 -138643165 + MIR3 SINE MIR 37 184 -24 780 226 32 36 chr12 5143894 5144115 -138642340 + MIR SINE MIR 29 248 -14 375 23 0 0 chr12 5146076 5146120 -138640335 + (CA)n Simple_repeat Simple_repeat 1 44 0 340 261 48 11 chr12 5146874 5147039 -138639416 - MIR SINE MIR -4 258 12 372 365 41 15 chr12 5148053 5148393 -138638062 - L3b LINE CR1 -92 1491 1143 1041 189 34 5 chr12 5148510 5148716 -138637739 - MER20 DNA MER1_type 0 219 8 41 58 0 0 chr12 5150036 5150105 -138636350 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr12 5151887 5151915 -138634540 + AT_rich Low_complexity Low_complexity 1 28 0 362 100 17 0 chr12 5152187 5152247 -138634208 + (GGGGA)n Simple_repeat Simple_repeat 3 63 0 2158 110 3 0 chr12 5152362 5152684 -138633771 - AluSx SINE Alu 0 323 1 183 143 29 0 chr12 5152761 5152796 -138633659 - MIR3 SINE MIR -49 159 124 2583 150 31 0 chr12 5154087 5154500 -138631955 + MSTB LTR MaLR 1 426 0 2201 95 7 0 chr12 5154577 5154860 -138631595 + AluSg SINE Alu 2 286 -24 22 0 0 0 chr12 5154860 5154882 -138631573 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr12 5154922 5154947 -138631508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2387 176 170 29 chr12 5154993 5155612 -138630843 + L1MB7 LINE L1 5454 6159 -25 321 356 65 40 chr12 5155732 5156007 -138630448 - L2 LINE L2 -2 3270 2989 232 320 115 0 chr12 5156758 5156880 -138629575 - MIR SINE MIR -8 254 119 1935 109 12 0 chr12 5157671 5157928 -138628527 - AluSq SINE Alu -53 260 1 364 223 161 18 chr12 5158533 5158645 -138627810 + MIR3 SINE MIR 15 142 -66 613 330 95 46 chr12 5159153 5160191 -138626264 + L2 LINE L2 2170 3271 -1 954 276 165 13 chr12 5160330 5160824 -138625631 + L2 LINE L2 2696 3264 -49 260 266 137 65 chr12 5161410 5161688 -138624767 - L2 LINE L2 -109 3163 2866 2204 109 10 19 chr12 5162558 5162871 -138623584 - AluSg SINE Alu 0 310 1 421 290 73 38 chr12 5162933 5163361 -138623094 + L2 LINE L2 2627 3079 -193 1255 211 102 5 chr12 5163798 5164177 -138622278 + MER63 DNA MER1_type 8 1060 0 2258 76 7 40 chr12 5164801 5165102 -138621353 + AluSg1 SINE Alu 1 291 -18 23 78 0 0 chr12 5165680 5165731 -138620724 + AT_rich Low_complexity Low_complexity 1 51 0 397 254 25 16 chr12 5166567 5166689 -138619766 - MIR3 SINE MIR -79 129 7 288 137 0 0 chr12 5167317 5167368 -138619087 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 943 254 65 7 chr12 5167764 5168040 -138618415 + MLT1C LTR MaLR 124 415 -52 849 47 0 0 chr12 5168044 5168150 -138618305 + (GAA)n Simple_repeat Simple_repeat 3 108 0 271 363 20 36 chr12 5168817 5169068 -138617387 + L3 LINE CR1 497 743 -834 219 234 0 0 chr12 5171172 5171219 -138615236 + L3 LINE CR1 1530 1576 -1 1718 182 24 0 chr12 5172254 5172551 -138613904 - AluJb SINE Alu -4 308 5 1206 258 81 15 chr12 5174326 5174722 -138611733 + LTR16A LTR ERVL 23 444 -6 1995 38 8 0 chr12 5174731 5174970 -138611485 - L1PA4 LINE L1 0 6155 5915 244 53 53 26 chr12 5175059 5175097 -138611358 - L1PA4 LINE L1 -280 5875 5837 1753 196 0 3 chr12 5176122 5176423 -138610032 - AluJb SINE Alu -11 301 2 25 0 0 0 chr12 5179092 5179117 -138607338 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr12 5179203 5179232 -138607223 + AT_rich Low_complexity Low_complexity 1 29 0 198 217 104 87 chr12 5179781 5179853 -138606602 - MIR SINE MIR -59 203 127 2100 131 7 0 chr12 5179853 5180150 -138606305 + AluSx SINE Alu 1 299 -13 198 217 104 87 chr12 5180150 5180192 -138606263 - MIR SINE MIR -135 127 87 218 150 50 0 chr12 5180243 5180283 -138606172 - L2 LINE L2 -10 3262 3221 537 233 54 4 chr12 5180888 5181055 -138605400 + MER104 DNA Tc2 1 177 -3 192 97 0 0 chr12 5181994 5182025 -138604430 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 251 53 0 26 chr12 5186364 5186402 -138600053 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 23 33 0 0 chr12 5186633 5186663 -138599792 + AT_rich Low_complexity Low_complexity 1 30 0 39 38 0 0 chr12 5192219 5192272 -138594183 + AT_rich Low_complexity Low_complexity 1 53 0 276 170 0 0 chr12 5192699 5192752 -138593703 + CT-rich Low_complexity Low_complexity 2 54 0 621 219 0 24 chr12 5192759 5192882 -138593573 - FRAM SINE Alu -61 115 1 766 322 173 8 chr12 5192932 5193697 -138592758 - L2 LINE L2 0 3313 2407 267 287 30 48 chr12 5194200 5194367 -138592088 + LTR16C LTR ERVL 328 491 0 2136 279 128 26 chr12 5194368 5194491 -138591964 - L2 LINE L2 -942 2372 2263 889 173 152 11 chr12 5194491 5194682 -138591773 - MER20 DNA MER1_type 0 219 2 2136 279 128 26 chr12 5194682 5195482 -138590973 - L2 LINE L2 -1051 2263 1327 2166 138 3 0 chr12 5195482 5195793 -138590662 + AluSx SINE Alu 1 312 0 2136 279 128 26 chr12 5195793 5195918 -138590537 - L2 LINE L2 -1987 1327 1216 2292 90 0 7 chr12 5196388 5196727 -138589728 - AluY SINE Alu 0 311 1 810 301 52 19 chr12 5197148 5197457 -138588998 + L1ME1 LINE L1 139 457 -5939 4282 222 107 28 chr12 5197479 5197657 -138588798 + L1ME1 LINE L1 3893 4055 -2160 243 0 0 0 chr12 5197657 5197684 -138588771 + (CA)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5197684 5198934 -138587521 + L1ME1 LINE L1 4055 5434 -781 993 193 140 8 chr12 5198915 5199158 -138587297 + L1ME1 LINE L1 5955 6229 -6 * 375 342 59 78 chr12 5199386 5199860 -138586595 - L2 LINE L2 -4 3268 2804 310 325 68 12 chr12 5200179 5200342 -138586113 + MLT1L LTR MaLR 410 581 -34 585 310 54 71 chr12 5200431 5200912 -138585543 - MLT1K LTR MaLR -7 581 109 186 231 0 0 chr12 5201010 5201049 -138585406 - L2 LINE L2 -844 2470 2432 360 311 97 48 chr12 5201131 5201677 -138584778 - L2 LINE L2 -1409 1905 1333 7300 124 48 10 chr12 5201824 5202740 -138583715 + Tigger3b DNA MER2_type 3 974 -2054 1936 148 3 13 chr12 5202740 5203043 -138583412 - AluJb SINE Alu -7 305 6 7300 124 48 10 chr12 5203043 5203292 -138583163 + Tigger3b DNA MER2_type 974 1212 -19 739 229 58 39 chr12 5204244 5204421 -138582034 - MER3 DNA MER1_type 0 209 26 2472 68 0 3 chr12 5204421 5204717 -138581738 - AluY SINE Alu -16 295 1 739 229 58 39 chr12 5204717 5204744 -138581711 - MER3 DNA MER1_type -183 26 1 201 156 0 0 chr12 5205276 5205308 -138581147 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2390 89 0 0 chr12 5205973 5206266 -138580189 - AluSc SINE Alu -16 293 1 26 30 0 0 chr12 5208709 5208742 -138577713 + AT_rich Low_complexity Low_complexity 1 33 0 1914 123 82 21 chr12 5208972 5209312 -138577143 + MER46B DNA MER2_type 1 236 0 802 289 76 23 chr12 5209369 5209764 -138576691 - L1ME3A LINE L1 -328 5842 5427 * 4288 204 56 38 chr12 5209756 5210659 -138575796 - L1MB3 LINE L1 0 6183 5258 512 65 0 130 chr12 5210659 5210751 -138575704 - MADE1 DNA Mariner 0 80 1 4288 204 56 38 chr12 5210751 5211288 -138575167 - L1MB3 LINE L1 -925 5258 4732 1508 269 121 37 chr12 5211423 5211992 -138574463 - L1MB3 LINE L1 -1650 4496 3977 1685 182 30 43 chr12 5211992 5212360 -138574095 - MLT1A1 LTR MaLR -2 363 1 1508 269 121 37 chr12 5212360 5213042 -138573413 - L1MB3 LINE L1 -2169 3977 3139 511 238 142 27 chr12 5213041 5213425 -138573030 - L1MEc LINE L1 -4494 1635 1242 * 687 294 107 44 chr12 5213426 5213492 -138572963 - L1MEc LINE L1 -4933 1186 1126 2636 39 7 3 chr12 5213492 5213799 -138572656 - AluY SINE Alu -3 308 1 687 294 107 44 chr12 5213799 5214351 -138572104 - L1MEc LINE L1 -4993 1126 529 255 219 0 16 chr12 5215047 5215111 -138571344 + GA-rich Low_complexity Low_complexity 2 64 0 218 286 14 0 chr12 5215326 5215396 -138571059 + L3b LINE CR1 1333 1403 -180 243 0 0 0 chr12 5215466 5215493 -138570962 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 5215492 5215512 -138570943 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 210 71 0 0 chr12 5215531 5215559 -138570896 + (CACG)n Simple_repeat Simple_repeat 1 28 0 1649 163 3 37 chr12 5216132 5216427 -138570028 + AluJo SINE Alu 9 293 -19 925 264 35 35 chr12 5216649 5216967 -138569488 + L1MA9 LINE L1 5957 6274 -38 309 222 152 10 chr12 5217413 5217512 -138568943 - MIR SINE MIR -118 144 32 276 374 14 14 chr12 5217626 5217765 -138568690 + MIR SINE MIR 7 145 -117 194 327 0 0 chr12 5217773 5217828 -138568627 + L2 LINE L2 3247 3301 -12 453 230 57 109 chr12 5217948 5218076 -138568379 + L1MC5 LINE L1 7603 7736 -225 2563 47 0 28 chr12 5218076 5218396 -138568059 + AluY SINE Alu 1 311 0 453 230 57 109 chr12 5218396 5218598 -138567857 + L1MC5 LINE L1 7736 7916 -45 221 248 34 86 chr12 5219668 5219785 -138566670 - MIR SINE MIR -70 192 82 1016 145 14 104 chr12 5220114 5220335 -138566120 + THE1B LTR MaLR 164 364 0 12103 95 2 2 chr12 5220335 5221916 -138564539 + THE1B-int LTR MaLR 1 1580 0 2104 132 30 30 chr12 5221916 5222279 -138564176 + THE1B LTR MaLR 1 363 -1 270 255 78 35 chr12 5222285 5222426 -138564029 + MIR SINE MIR 115 261 -1 2611 206 17 11 chr12 5222902 5223441 -138563014 - MER74A LTR ERVL -16 542 1 243 261 118 59 chr12 5223718 5223837 -138562618 - L2 LINE L2 -1 3271 3146 271 330 32 37 chr12 5224546 5224734 -138561721 - L3 LINE CR1 -335 1242 1056 188 323 99 20 chr12 5224883 5225084 -138561371 + L3b LINE CR1 1342 1558 -25 1191 284 130 40 chr12 5226316 5226502 -138559953 - L1M4 LINE L1 -1783 4363 4195 829 92 8 8 chr12 5226502 5226632 -138559823 + (TTTC)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5226632 5226946 -138559509 - L1M4 LINE L1 -1951 4195 3911 2096 39 75 4 chr12 5226946 5227201 -138559254 + AluY SINE Alu 24 296 -15 1191 284 130 40 chr12 5227201 5227930 -138558525 - L1M4 LINE L1 -2235 3911 3022 416 304 81 14 chr12 5228302 5228647 -138557808 - L1M4 LINE L1 -3526 2620 2253 2638 174 131 13 chr12 5229859 5230400 -138556055 + MER6A DNA MER2_type 1 605 0 180 289 0 19 chr12 5230480 5230532 -138555923 + MIR3 SINE MIR 155 205 -3 23 0 0 0 chr12 5231130 5231153 -138555302 + AT_rich Low_complexity Low_complexity 1 23 0 577 259 15 0 chr12 5231682 5231813 -138554642 + MER94 DNA DNA 2 134 0 964 249 128 41 chr12 5232387 5232801 -138553654 + MLT1J2 LTR MaLR 1 450 0 3341 157 40 27 chr12 5233165 5233790 -138552665 + L1PA16 LINE L1 5521 6153 -13 479 153 92 0 chr12 5234526 5234624 -138551831 + MIR SINE MIR 60 166 -96 1530 138 0 127 chr12 5234786 5235126 -138551329 + AluJb SINE Alu 1 297 -15 200 219 0 0 chr12 5235459 5235500 -138550955 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 765 213 66 35 chr12 5235933 5236130 -138550325 - MER63A DNA MER1_type -7 203 1 882 284 0 0 chr12 5236713 5236938 -138549517 + MIR SINE MIR 28 252 -10 223 189 38 0 chr12 5236952 5237005 -138549450 + (CAT)n Simple_repeat Simple_repeat 3 57 0 1273 130 0 0 chr12 5238368 5238545 -138547910 - FRAM SINE Alu -4 172 1 529 268 37 6 chr12 5238602 5238766 -138547689 + MIR3 SINE MIR 33 201 -7 334 271 120 47 chr12 5238921 5239179 -138547276 - L2 LINE L2 -1 3312 3036 183 286 45 23 chr12 5239202 5239335 -138547120 - L2 LINE L2 -3120 194 59 435 38 0 0 chr12 5241425 5241478 -138544977 + (CA)n Simple_repeat Simple_repeat 1 53 0 788 211 33 11 chr12 5243052 5243232 -138543223 + MER5A DNA MER1_type 1 184 -5 2197 80 49 0 chr12 5243284 5243570 -138542885 + AluSp SINE Alu 1 300 -13 223 309 25 0 chr12 5244242 5244323 -138542132 - MIR3 SINE MIR -26 182 100 227 333 43 0 chr12 5245943 5246036 -138540419 - MIR SINE MIR -1 261 165 432 361 21 0 chr12 5246254 5246445 -138540010 - MIR3 SINE MIR -9 199 5 1020 219 113 124 chr12 5247557 5248502 -138537953 + L2 LINE L2 2405 3312 -1 247 246 14 29 chr12 5248793 5248862 -138537593 - L2 LINE L2 0 3272 3205 249 83 0 0 chr12 5251177 5251213 -138535242 + (A)n Simple_repeat Simple_repeat 1 36 0 1950 69 11 25 chr12 5251535 5251851 -138534604 - AluSc SINE Alu 0 321 10 1575 91 5 0 chr12 5251938 5252148 -138534307 + AluSp SINE Alu 79 289 -24 2720 258 109 40 chr12 5252175 5253462 -138532993 + HAL1 LINE L1 42 1416 -1091 1235 238 68 86 chr12 5253561 5253610 -138532845 + HAL1 LINE L1 1778 1826 -681 2305 75 0 25 chr12 5253610 5253928 -138532527 + AluY SINE Alu 1 310 -1 1235 238 68 86 chr12 5253928 5254438 -138532017 + HAL1 LINE L1 1826 2324 -183 1587 134 116 15 chr12 5254438 5254766 -138531689 + MER46B DNA MER2_type 1 236 0 1235 238 68 86 chr12 5254766 5254912 -138531543 + HAL1 LINE L1 2324 2471 -36 503 193 180 19 chr12 5255006 5255167 -138531288 + MER53 DNA DNA 2 188 -1 1449 258 110 43 chr12 5255189 5255934 -138530521 + HAL1 LINE L1 1383 2177 -330 978 250 41 116 chr12 5255988 5256566 -138529889 + L2 LINE L2 2754 3293 -20 561 196 23 86 chr12 5256576 5256737 -138529718 + HAL1 LINE L1 2301 2446 -61 2497 144 34 2 chr12 5256737 5257148 -138529307 + MSTA LTR MaLR 1 424 -4 561 196 23 86 chr12 5257148 5257206 -138529249 + HAL1 LINE L1 2446 2506 -1 2499 50 0 0 chr12 5257214 5257516 -138528939 + AluY SINE Alu 1 302 -9 376 323 85 11 chr12 5257621 5257881 -138528574 + L2 LINE L2 2450 2728 -586 2104 139 144 11 chr12 5257884 5258258 -138528197 + MSTA LTR MaLR 1 424 -4 340 353 101 58 chr12 5258329 5258631 -138527824 + L2 LINE L2 2850 3174 -98 450 0 0 0 chr12 5258631 5258681 -138527774 + (CA)n Simple_repeat Simple_repeat 2 51 0 340 353 101 58 chr12 5258681 5258775 -138527680 + L2 LINE L2 3174 3263 -9 966 225 136 121 chr12 5258942 5259529 -138526926 - Tigger8 DNA MER2_type -1 665 70 1215 91 6 0 chr12 5260220 5260396 -138526059 - L1P4 LINE L1 -684 5481 5305 441 0 0 0 chr12 5260449 5260498 -138525957 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 206 253 76 38 chr12 5260831 5260910 -138525545 + MIR SINE MIR 119 200 -62 2631 141 16 21 chr12 5261082 5261515 -138524940 - Tigger2a DNA MER2_type -2 432 2 1473 203 43 48 chr12 5261697 5262071 -138524384 + MLT1B LTR MaLR 1 372 -18 581 182 41 100 chr12 5262888 5263018 -138523437 + MER97c DNA MER1_type? 19 138 -952 4230 168 102 9 chr12 5263018 5263804 -138522651 - MER21B LTR ERV1 -3 860 2 581 182 41 100 chr12 5263804 5263843 -138522612 + MER97c DNA MER1_type? 138 178 -912 222 378 108 14 chr12 5264076 5264298 -138522157 + L2 LINE L2 2824 3066 -206 3346 133 25 55 chr12 5264386 5264445 -138522010 - LTR36 LTR ERV1 -26 585 526 2113 96 10 32 chr12 5264445 5264759 -138521696 + AluSq SINE Alu 1 307 -6 3346 133 25 55 chr12 5264759 5265260 -138521195 - LTR36 LTR ERV1 -85 526 42 2465 53 0 0 chr12 5265260 5265559 -138520896 + AluY SINE Alu 1 299 -12 3346 133 25 55 chr12 5265559 5265597 -138520858 - LTR36 LTR ERV1 -569 42 4 254 270 10 40 chr12 5266358 5266458 -138519997 + MLT1L LTR MaLR 17 113 -502 1770 148 3 23 chr12 5266459 5266762 -138519693 + AluJo SINE Alu 1 297 -15 270 116 0 0 chr12 5266771 5266814 -138519641 + (GAA)n Simple_repeat Simple_repeat 2 44 0 367 215 13 13 chr12 5266969 5267048 -138519407 + MLT1L LTR MaLR 322 400 -215 997 229 238 52 chr12 5267094 5267557 -138518898 + MLT1H LTR MaLR 1 549 0 268 261 22 11 chr12 5267557 5267639 -138518816 + MLT1L LTR MaLR 487 569 -46 385 329 86 7 chr12 5268732 5268884 -138517571 - MIR SINE MIR -78 184 21 321 331 33 76 chr12 5268970 5269154 -138517301 + MIR3 SINE MIR 9 184 -24 274 306 33 87 chr12 5270940 5271123 -138515332 + MER5B DNA MER1_type 5 177 -1 331 253 58 11 chr12 5271172 5271259 -138515196 + MER5A DNA MER1_type 56 146 -43 585 200 250 17 chr12 5271892 5272072 -138514383 + MIR SINE MIR 7 228 -34 323 248 177 9 chr12 5272194 5272307 -138514148 + L1ME4a LINE L1 5635 5766 -355 429 263 39 28 chr12 5272564 5272743 -138513712 + L1ME4a LINE L1 5941 6121 0 188 256 0 0 chr12 5272752 5272791 -138513664 - MIR SINE MIR -100 108 70 1006 169 13 9 chr12 5273402 5273721 -138512734 + GA-rich Low_complexity Low_complexity 1 320 0 259 277 79 20 chr12 5274095 5274196 -138512259 - MIR SINE MIR -84 124 18 217 0 61 0 chr12 5274440 5274473 -138511982 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 487 170 28 28 chr12 5275280 5275386 -138511069 + MER103 DNA DNA 14 119 -47 451 303 56 26 chr12 5275481 5275676 -138510779 + L3b LINE CR1 1265 1465 -118 449 270 82 41 chr12 5276485 5276681 -138509774 - MIR SINE MIR 0 262 59 2016 139 0 0 chr12 5276899 5277209 -138509246 - AluSx SINE Alu -2 310 1 2089 105 10 3 chr12 5278559 5278854 -138507601 + AluSq SINE Alu 1 297 -16 412 247 111 58 chr12 5278881 5279071 -138507384 - Charlie8 DNA MER1_type -2131 286 87 387 0 0 0 chr12 5279232 5279275 -138507180 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 0 0 0 chr12 5280101 5280147 -138506308 + (TG)n Simple_repeat Simple_repeat 2 47 0 494 257 35 0 chr12 5280190 5280303 -138506152 + MIR SINE MIR 30 146 -62 391 297 102 0 chr12 5280762 5280890 -138505565 - MIR SINE MIR -48 214 74 300 304 0 0 chr12 5281607 5281768 -138504687 + (TG)n Simple_repeat Simple_repeat 2 162 0 319 211 42 0 chr12 5281768 5281839 -138504616 + L1MC4 LINE L1 1995 2068 -4358 261 253 40 61 chr12 5282040 5282139 -138504316 + MIR SINE MIR 71 167 -95 878 223 52 24 chr12 5282168 5282379 -138504076 - MIR SINE MIR -39 223 7 1676 137 45 16 chr12 5285322 5285615 -138500840 + L1P LINE L1 4351 4655 -1491 1202 106 38 64 chr12 5285615 5285840 -138500615 + L1PA11 LINE L1 5946 6174 0 1676 137 45 16 chr12 5285840 5285860 -138500595 + L1P LINE L1 4655 4673 -1473 294 293 57 19 chr12 5285925 5286031 -138500424 - L2 LINE L2 -9 3304 3195 278 137 20 0 chr12 5286203 5286254 -138500201 - MER53 DNA DNA 0 189 138 2793 209 34 61 chr12 5288363 5289120 -138497335 + L1MC4 LINE L1 4997 5773 -653 2443 62 3 0 chr12 5289120 5289428 -138497027 + AluY SINE Alu 1 309 -2 2793 209 34 61 chr12 5289428 5289628 -138496827 + L1MC4 LINE L1 5773 5320 -1106 249 98 0 0 chr12 5289628 5289669 -138496786 + (TG)n Simple_repeat Simple_repeat 2 42 0 2793 209 34 61 chr12 5289669 5290025 -138496430 + L1MC4 LINE L1 5319 5683 -743 304 315 34 68 chr12 5289709 5290061 -138496394 + L1MA10 LINE L1 5942 6281 -311 * 623 119 0 0 chr12 5290088 5290172 -138496283 - AluJ/FLAM SINE Alu -227 85 2 347 285 24 0 chr12 5290175 5290298 -138496157 + L1MA10 LINE L1 6486 6611 -3 699 265 152 19 chr12 5290590 5291096 -138495359 + L1ME3 LINE L1 5300 5829 -333 208 244 0 35 chr12 5291829 5291915 -138494540 + T-rich Low_complexity Low_complexity 2 84 0 264 344 32 0 chr12 5292022 5292179 -138494276 + L1ME LINE L1 5482 5643 -478 290 329 72 0 chr12 5292195 5292362 -138494093 + L1ME LINE L1 5692 5870 -300 2225 44 0 0 chr12 5292364 5292637 -138493818 - AluY SINE Alu -4 307 35 22 0 0 0 chr12 5292644 5292666 -138493789 + AT_rich Low_complexity Low_complexity 1 22 0 582 165 0 0 chr12 5292703 5292800 -138493655 + MSTA LTR MaLR 1 97 -331 1861 141 41 63 chr12 5293113 5293245 -138493210 + MSTA LTR MaLR 74 207 -221 2310 92 0 0 chr12 5293245 5293543 -138492912 + AluSc SINE Alu 9 302 -7 1861 141 41 63 chr12 5293543 5293773 -138492682 + MSTA LTR MaLR 207 428 0 467 257 68 78 chr12 5293990 5294580 -138491875 - L1MC5 LINE L1 -199 7843 7248 227 159 68 0 chr12 5294590 5294634 -138491821 - L1MC4 LINE L1 -795 7247 7201 * 331 288 68 41 chr12 5294611 5294830 -138491625 - L1MC5 LINE L1 -737 7224 7000 593 272 44 11 chr12 5295648 5295828 -138490627 + MIR SINE MIR 7 192 -70 2025 173 56 19 chr12 5295901 5296331 -138490124 + MER61C LTR ERV1 4 433 -1 219 236 0 18 chr12 5296625 5296680 -138489775 + MIR SINE MIR 88 141 -67 956 212 0 0 chr12 5298082 5298252 -138488203 - AluJb SINE Alu -7 305 136 1810 77 0 42 chr12 5298734 5298994 -138487461 + L1PB3 LINE L1 5752 6000 -154 490 308 50 6 chr12 5299074 5299233 -138487222 + MIR SINE MIR 22 187 -75 708 262 16 11 chr12 5299249 5299432 -138487023 - MIR SINE MIR -12 250 67 399 21 0 0 chr12 5299708 5299756 -138486699 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 235 0 29 chr12 5299773 5299841 -138486614 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 197 0 71 0 chr12 5300484 5300512 -138485943 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 188 298 0 0 chr12 5301069 5301126 -138485329 - L3 LINE CR1 -1117 460 404 222 284 136 23 chr12 5302213 5302301 -138484154 + MIR SINE MIR 160 257 -5 977 206 94 26 chr12 5302926 5303276 -138483179 - LTR37A LTR ERV1 0 426 53 588 206 73 30 chr12 5305774 5305939 -138480516 - MER5B DNA MER1_type 0 178 7 314 264 46 11 chr12 5306167 5306254 -138480201 - MLT1I LTR MaLR 0 409 320 1964 151 47 114 chr12 5306355 5306844 -138479611 + MLT2C2 LTR ERVL 3 458 -6 25357 202 29 26 chr12 5306844 5307015 -138479440 + ERVL LTR ERVL 8 177 -5580 279 0 0 0 chr12 5307015 5307046 -138479409 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5307046 5308018 -138478437 + ERVL LTR ERVL 177 1145 -4612 2208 211 49 58 chr12 5308018 5308573 -138477882 - MLT2B3 LTR ERVL -4 550 1 25357 202 29 26 chr12 5308573 5313056 -138473399 + ERVL LTR ERVL 1145 5757 0 1787 180 30 3 chr12 5313062 5313395 -138473060 + MLT2C1 LTR ERVL 8 349 -48 227 140 70 0 chr12 5313414 5313471 -138472984 - L1MC4 LINE L1 -1341 6701 6641 557 119 144 85 chr12 5313485 5313603 -138472852 + Tigger1 DNA MER2_type 15 139 -2279 * 979 151 104 5 chr12 5313599 5313791 -138472664 + Tigger1 DNA MER2_type 2200 2410 -8 43560 32 25 1 chr12 5313792 5319794 -138466661 + L1PA2 LINE L1 4 6155 0 281 137 118 0 chr12 5319854 5319905 -138466550 + MLT2C1 LTR ERVL 464 520 0 329 295 51 26 chr12 5320235 5320391 -138466064 + MIR SINE MIR 47 206 -56 450 139 38 38 chr12 5320681 5320760 -138465695 - MER2 DNA MER2_type -266 79 1 637 300 79 45 chr12 5321555 5321958 -138464497 + MLT1K LTR MaLR 11 427 -161 390 42 0 0 chr12 5322499 5322547 -138463908 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 182 0 23 chr12 5322789 5322833 -138463622 + GA-rich Low_complexity Low_complexity 1 43 0 302 314 122 0 chr12 5323037 5323209 -138463246 + MIR SINE MIR 46 238 -24 276 163 20 0 chr12 5323390 5323439 -138463016 - MER66A LTR ERV1 -402 76 27 315 317 69 7 chr12 5324718 5324863 -138461592 - MIR SINE MIR -17 245 92 3031 231 42 36 chr12 5324863 5325089 -138461366 - L1ME2 LINE L1 -3 6161 5938 2593 107 23 28 chr12 5325089 5325481 -138460974 - MLT1B LTR MaLR 0 390 1 3031 231 42 36 chr12 5325481 5326142 -138460313 - L1ME2 LINE L1 -226 5938 5282 1784 186 7 0 chr12 5326142 5326438 -138460017 + AluJb SINE Alu 1 298 -14 3031 231 42 36 chr12 5326438 5327226 -138459229 - L1ME2 LINE L1 -882 5282 4477 3231 146 23 4 chr12 5327231 5327744 -138458711 - L1PB4 LINE L1 -12 6144 5622 2221 125 46 10 chr12 5327748 5328330 -138458125 + L1PB4 LINE L1 5015 5609 -547 1805 241 77 42 chr12 5328332 5329070 -138457385 - L1ME2 LINE L1 -1655 4491 3728 209 344 0 0 chr12 5329076 5329137 -138457318 - MIR SINE MIR -153 109 49 3457 77 4 2 chr12 5329535 5329987 -138456468 - L1PA10 LINE L1 -51 6117 5665 4893 41 0 2 chr12 5330199 5330815 -138455640 + L1PA3 LINE L1 5598 6212 0 22 0 0 0 chr12 5332268 5332290 -138454165 + AT_rich Low_complexity Low_complexity 1 22 0 286 280 127 17 chr12 5332331 5332449 -138454006 + MIR3 SINE MIR 66 196 -12 271 258 86 80 chr12 5332645 5332796 -138453659 - L2 LINE L2 -4 3268 3117 487 299 58 39 chr12 5334700 5334907 -138451548 + MIR SINE MIR 40 250 -12 282 309 58 22 chr12 5335888 5336027 -138450428 - MIR3 SINE MIR -61 147 4 403 278 23 30 chr12 5337109 5337242 -138449213 - MIR SINE MIR -41 221 90 352 306 54 7 chr12 5337850 5337997 -138448458 + MIR3 SINE MIR 31 184 -24 297 283 40 10 chr12 5338595 5338694 -138447761 - MIR SINE MIR -26 236 135 195 259 161 25 chr12 5340417 5340498 -138445957 + MIR SINE MIR 44 135 -73 455 294 41 35 chr12 5340830 5341027 -138445428 - MIR SINE MIR -55 207 10 2417 235 56 14 chr12 5342518 5343160 -138443295 + L1MC4a LINE L1 7140 7808 0 1232 162 5 5 chr12 5343165 5343381 -138443074 + L1PA15 LINE L1 5938 6153 -12 274 128 0 39 chr12 5343381 5343428 -138443027 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 197 32 0 32 chr12 5343428 5343459 -138442996 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 327 188 43 0 chr12 5343757 5343826 -138442629 - L1MB1 LINE L1 -36 6153 6082 284 274 127 45 chr12 5344012 5344169 -138442286 - L3 LINE CR1 -34 1543 1374 462 296 169 21 chr12 5344361 5344604 -138441851 - L3 LINE CR1 -276 1301 1023 309 296 62 6 chr12 5344628 5344807 -138441648 + L1ME4a LINE L1 5706 5894 -227 * 1055 225 74 21 chr12 5344806 5345144 -138441311 + L1ME3A LINE L1 5812 6167 -3 2778 211 128 96 chr12 5345185 5345938 -138440517 + L1MC3 LINE L1 6384 7265 -520 342 191 29 0 chr12 5345938 5346006 -138440449 + MLT1F1 LTR MaLR 56 125 -442 2778 211 128 96 chr12 5346006 5346528 -138439927 + L1MC3 LINE L1 7265 7769 -16 240 269 0 0 chr12 5346586 5346638 -138439817 + (CA)n Simple_repeat Simple_repeat 2 53 0 578 192 0 10 chr12 5348035 5348139 -138438316 + FLAM_A SINE Alu 18 120 -22 441 0 0 0 chr12 5348824 5348873 -138437582 + (CA)n Simple_repeat Simple_repeat 1 49 0 294 303 23 61 chr12 5350093 5350225 -138436230 - L2 LINE L2 -4 3268 3142 399 244 144 37 chr12 5350308 5350579 -138435876 - LTR33 LTR ERVL 0 521 222 213 151 0 0 chr12 5351862 5351915 -138434540 + A-rich Low_complexity Low_complexity 1 53 0 355 271 241 15 chr12 5352376 5352579 -138433876 - MIR SINE MIR 0 262 14 351 60 0 0 chr12 5353680 5353730 -138432725 + (TG)n Simple_repeat Simple_repeat 2 51 0 375 276 106 76 chr12 5354087 5354362 -138432093 - HAL1 LINE L1 0 2507 2225 303 276 109 63 chr12 5354439 5354613 -138431842 - HAL1b LINE L1 -383 965 784 326 334 91 29 chr12 5355656 5356039 -138430416 + L1MEd LINE L1 347 753 -5366 192 258 81 0 chr12 5356169 5356231 -138430224 - MIR3 SINE MIR -32 176 110 793 243 21 21 chr12 5356716 5356905 -138429550 - MER5A DNA MER1_type 0 189 1 492 201 235 40 chr12 5356916 5357065 -138429390 - MER5A DNA MER1_type -3 186 9 186 246 58 72 chr12 5357766 5357835 -138428620 - L2 LINE L2 0 3272 3205 247 340 19 9 chr12 5358085 5358191 -138428264 + L3b LINE CR1 1292 1398 -185 184 346 0 0 chr12 5360792 5360844 -138425611 - MIR SINE MIR -141 67 16 181 260 52 31 chr12 5362422 5362518 -138423937 + L2 LINE L2 2925 3022 -250 215 333 151 0 chr12 5363005 5363098 -138423357 + MIR SINE MIR 47 153 -109 416 242 0 22 chr12 5363915 5364006 -138422449 + MIR3 SINE MIR 103 191 -17 237 341 53 59 chr12 5364455 5364633 -138421822 - MIR3 SINE MIR -63 199 9 366 285 132 51 chr12 5365023 5365214 -138421241 + MIR SINE MIR 5 204 -58 327 279 126 9 chr12 5365357 5365468 -138420987 + L2 LINE L2 3140 3263 -9 180 152 0 0 chr12 5365470 5365503 -138420952 + A-rich Low_complexity Low_complexity 5 37 0 215 247 206 0 chr12 5366229 5366302 -138420153 - MIR SINE MIR -129 133 46 1894 151 0 17 chr12 5366898 5367190 -138419265 + AluJb SINE Alu 5 291 -21 487 299 55 0 chr12 5367248 5367412 -138419043 - MIR SINE MIR -26 236 64 1874 189 3 0 chr12 5368422 5368718 -138417737 + AluJo SINE Alu 1 297 -15 23 78 0 0 chr12 5368743 5368794 -138417661 + AT_rich Low_complexity Low_complexity 1 51 0 2417 89 7 0 chr12 5368914 5369218 -138417237 + AluSx SINE Alu 1 306 -6 446 320 122 14 chr12 5369258 5369480 -138416975 + MIR SINE MIR 7 252 -10 366 248 219 0 chr12 5369469 5369574 -138416881 - L2 LINE L2 -2 3311 3184 * 345 302 111 48 chr12 5369943 5370132 -138416323 + MIR3 SINE MIR 3 203 -5 1037 295 43 19 chr12 5370366 5370742 -138415713 + MLT1I LTR MaLR 25 409 0 429 253 104 33 chr12 5371103 5371285 -138415170 - MIR SINE MIR -65 197 3 322 218 211 68 chr12 5372702 5372849 -138413606 + L2 LINE L2 3146 3313 0 217 313 16 0 chr12 5372851 5372915 -138413540 + L3b LINE CR1 1302 1366 -217 * 666 263 70 0 chr12 5372906 5373092 -138413363 + MIR SINE MIR 15 213 -49 789 150 18 0 chr12 5373097 5373210 -138413245 + FLAM_C SINE Alu 6 120 -23 180 0 0 0 chr12 5373210 5373230 -138413225 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 236 204 20 0 chr12 5373234 5373283 -138413172 + MIR SINE MIR 208 257 -5 640 282 31 31 chr12 5373694 5373889 -138412566 + MIR SINE MIR 8 202 -60 386 305 102 0 chr12 5374324 5374442 -138412013 + MER5A DNA MER1_type 60 189 0 234 204 0 0 chr12 5374453 5374497 -138411958 + MIR3 SINE MIR 164 207 -1 1498 217 17 0 chr12 5375368 5375663 -138410792 - AluJo SINE Alu -12 300 1 417 244 67 17 chr12 5376030 5376149 -138410306 + MIR3 SINE MIR 1 125 -83 215 289 0 0 chr12 5376199 5376244 -138410211 + L2 LINE L2 3210 3254 -18 181 318 71 48 chr12 5377090 5377216 -138409239 - L2 LINE L2 -12 3260 3132 617 239 189 25 chr12 5377264 5377507 -138408948 - L2 LINE L2 -6 3307 3025 444 285 223 0 chr12 5377735 5377928 -138408527 - MIR SINE MIR -26 236 1 1548 208 20 10 chr12 5378062 5378356 -138408099 - AluJo SINE Alu -15 297 1 302 286 82 59 chr12 5379164 5379419 -138407036 - MIR SINE MIR 0 262 2 230 193 35 0 chr12 5379789 5379846 -138406609 + MARNA DNA Mariner 394 452 -134 2333 104 0 0 chr12 5380278 5380575 -138405880 + AluSx SINE Alu 1 297 -15 333 0 0 0 chr12 5380575 5380612 -138405843 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 305 68 0 chr12 5381145 5381204 -138405251 + L2 LINE L2 3186 3248 -24 2270 71 0 20 chr12 5381451 5381787 -138404668 + AluY SINE Alu 17 311 0 183 336 80 50 chr12 5382218 5382456 -138403999 - L2 LINE L2 -4 3268 3024 845 83 0 18 chr12 5382477 5382586 -138403869 + AluSq/x SINE Alu 45 151 -161 299 331 132 0 chr12 5384747 5384868 -138401587 + L2 LINE L2 3136 3272 0 519 294 72 13 chr12 5385177 5385330 -138401125 + MIR3 SINE MIR 20 181 -27 593 121 30 0 chr12 5386097 5386196 -138400259 + MER58 DNA MER1_type 2318 2419 -1 208 327 28 37 chr12 5386529 5386636 -138399819 + L2 LINE L2 3153 3258 -14 2869 19 0 0 chr12 5386909 5387222 -138399233 - AluYb8 SINE Alu -5 313 1 182 170 0 21 chr12 5392374 5392421 -138394034 + C-rich Low_complexity Low_complexity 2 47 0 735 281 52 8 chr12 5393207 5393456 -138392999 - MIR SINE MIR 0 262 3 741 321 58 53 chr12 5394554 5395003 -138391452 + LTR16B LTR ERVL 1 451 -13 268 222 83 14 chr12 5395120 5395192 -138391263 - MER5A DNA MER1_type -99 90 14 326 186 12 0 chr12 5395284 5395370 -138391085 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 195 42 0 0 chr12 5397025 5397049 -138389406 + (TTCCC)n Simple_repeat Simple_repeat 3 26 0 802 243 15 5 chr12 5398264 5398443 -138388012 + MER5A DNA MER1_type 4 184 -5 354 249 141 68 chr12 5398519 5398696 -138387759 + MIR SINE MIR 15 204 -58 2941 148 24 16 chr12 5398983 5399482 -138386973 - MLT1D LTR MaLR -2 503 1 256 217 12 72 chr12 5399512 5399595 -138386860 - MIR3 SINE MIR -7 201 124 297 128 0 0 chr12 5400170 5400217 -138386238 + (T)n Simple_repeat Simple_repeat 1 47 0 234 81 0 0 chr12 5400537 5400574 -138385881 + (TG)n Simple_repeat Simple_repeat 2 38 0 471 328 41 26 chr12 5400828 5401023 -138385432 - MIR SINE MIR -2 260 63 797 219 31 85 chr12 5401825 5402049 -138384406 + MIR SINE MIR 49 260 -2 408 327 44 23 chr12 5402180 5402384 -138384071 + MIR SINE MIR 4 217 -45 1937 118 27 0 chr12 5402536 5402832 -138383623 - AluY SINE Alu -5 306 3 328 167 0 17 chr12 5402836 5402896 -138383559 - FAM SINE Alu -2 173 115 854 238 11 0 chr12 5402962 5403147 -138383308 - MLT2F LTR ERVL 0 663 477 180 200 0 0 chr12 5403175 5403220 -138383235 + (CTGGGG)n Simple_repeat Simple_repeat 3 47 0 2241 202 78 11 chr12 5403828 5404288 -138382167 - MLT2F LTR ERVL -172 491 1 409 240 31 31 chr12 5404676 5404805 -138381650 - MLT2F LTR ERVL -24 639 511 265 324 88 10 chr12 5405191 5405293 -138381162 + MIR SINE MIR 23 132 -76 2411 140 73 26 chr12 5405422 5405579 -138380876 + MER31A LTR ERV1 1 149 -336 1121 206 93 101 chr12 5405579 5406192 -138380263 - LTR36 LTR ERV1 0 611 4 2411 140 73 26 chr12 5406192 5406497 -138379958 + MER31A LTR ERV1 149 485 0 7497 37 5 0 chr12 5406593 5407536 -138378919 - L1PA5 LINE L1 0 6154 5210 261 57 0 0 chr12 5407603 5407638 -138378817 + (T)n Simple_repeat Simple_repeat 1 35 0 262 296 0 0 chr12 5407776 5407847 -138378608 + L2 LINE L2 3200 3270 -2 315 301 53 30 chr12 5407960 5408093 -138378362 - L1ME4a LINE L1 -11 6110 5975 406 313 113 0 chr12 5411388 5411538 -138374917 - MIR3 SINE MIR -2 206 40 671 228 58 78 chr12 5412726 5412932 -138373523 - MIR SINE MIR -41 221 20 476 191 75 0 chr12 5413852 5413946 -138372509 - MER5A DNA MER1_type -80 109 9 200 250 0 0 chr12 5414043 5414079 -138372376 - L3b LINE CR1 -257 1326 1291 679 282 12 82 chr12 5414090 5414335 -138372120 - MIR SINE MIR -3 259 32 195 383 47 0 chr12 5414768 5414875 -138371580 - L2 LINE L2 -24 3248 3137 257 308 15 90 chr12 5415164 5415297 -138371158 - L2 LINE L2 0 3313 3191 207 356 67 22 chr12 5415446 5415581 -138370874 - L2 LINE L2 -21 3251 3111 403 273 29 36 chr12 5415655 5415794 -138370661 + MER63A DNA MER1_type 69 206 -4 308 259 69 73 chr12 5415817 5416106 -138370349 - L2 LINE L2 -173 3099 2812 237 299 82 3 chr12 5416388 5416536 -138369919 + MIR SINE MIR 37 238 -24 380 343 70 6 chr12 5416654 5416826 -138369629 + L2 LINE L2 3087 3269 -3 245 183 17 0 chr12 5418276 5418336 -138368119 + (CA)n Simple_repeat Simple_repeat 2 62 0 1064 241 38 4 chr12 5420421 5420658 -138365797 - MIR SINE MIR 0 262 18 277 232 0 0 chr12 5420839 5420895 -138365560 + CT-rich Low_complexity Low_complexity 117 172 0 22 0 0 0 chr12 5421417 5421439 -138365016 + AT_rich Low_complexity Low_complexity 1 22 0 237 108 0 0 chr12 5421864 5421901 -138364554 + (TG)n Simple_repeat Simple_repeat 2 38 0 452 18 18 0 chr12 5422887 5422944 -138363511 + (GA)n Simple_repeat Simple_repeat 1 58 0 1917 188 30 10 chr12 5423193 5423592 -138362863 + L1MB7 LINE L1 5750 6156 -28 1247 203 109 14 chr12 5424429 5424705 -138361750 - AluJb SINE Alu 0 302 1 243 281 22 45 chr12 5425046 5425135 -138361320 + MIR SINE MIR 60 146 -62 324 120 0 0 chr12 5426628 5426678 -138359777 + (CATA)n Simple_repeat Simple_repeat 2 51 0 430 256 216 16 chr12 5427444 5427749 -138358706 + MLT1G1 LTR MaLR 230 595 0 269 277 23 35 chr12 5427980 5428097 -138358358 - MIR SINE MIR -103 105 16 5171 149 26 92 chr12 5428285 5429133 -138357322 - L1MA9 LINE L1 0 7272 6370 1664 88 0 0 chr12 5429133 5429349 -138357106 - AluSg/x SINE Alu -8 302 87 5171 149 26 92 chr12 5429349 5429648 -138356807 - L1MA9 LINE L1 -902 6370 6053 1735 172 13 0 chr12 5429648 5429956 -138356499 - AluJb SINE Alu 0 312 1 5171 149 26 92 chr12 5429956 5430081 -138356374 - L1MA9 LINE L1 -1219 6053 5921 2066 117 7 0 chr12 5430081 5430381 -138356074 - AluSq SINE Alu -11 302 1 5171 149 26 92 chr12 5430381 5430835 -138355620 - L1MA9 LINE L1 -1351 5921 5660 1883 229 37 18 chr12 5430827 5431339 -138355116 - L1MA9 LINE L1 -3423 3683 3162 * 980 266 99 20 chr12 5431367 5431769 -138354686 + MER57B LTR ERV1 1 434 0 1352 223 15 29 chr12 5431778 5431982 -138354473 - L1MA9 LINE L1 -5661 1369 1164 5019 28 2 5 chr12 5431982 5432564 -138353891 - L1PA3 LINE L1 -3 6152 5573 1352 223 15 29 chr12 5432564 5432698 -138353757 - L1MA9 LINE L1 -5866 1164 3 399 211 33 11 chr12 5432712 5432802 -138353653 + L2 LINE L2 3222 3313 0 330 337 66 31 chr12 5433466 5433662 -138352793 - MIR SINE MIR -36 226 24 195 299 58 23 chr12 5433798 5433885 -138352570 - MIR SINE MIR -70 192 103 248 265 44 0 chr12 5435116 5435184 -138351271 + L2 LINE L2 3242 3312 -1 476 283 36 18 chr12 5437013 5437179 -138349276 - MIR3 SINE MIR -10 198 30 1751 105 44 24 chr12 5437183 5437478 -138348977 + L1MA3 LINE L1 6005 6305 0 264 331 75 6 chr12 5438659 5438819 -138347636 + MER5A DNA MER1_type 1 171 -18 215 31 31 0 chr12 5438972 5439004 -138347451 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 260 334 138 2 chr12 5439136 5439308 -138347147 - MIR SINE MIR -68 194 15 197 303 66 0 chr12 5439664 5439740 -138346715 + L2 LINE L2 3114 3194 -78 221 0 35 0 chr12 5440063 5440092 -138346363 + (TC)n Simple_repeat Simple_repeat 1 30 0 187 329 63 0 chr12 5440481 5440560 -138345895 + L2 LINE L2 3111 3194 -78 307 272 52 29 chr12 5440663 5440799 -138345656 + MIR SINE MIR 110 248 -14 448 280 161 16 chr12 5440889 5441075 -138345380 - MIR SINE MIR -28 234 22 2018 119 0 10 chr12 5441652 5441964 -138344491 + AluSc SINE Alu 1 309 0 266 231 15 46 chr12 5442243 5442308 -138344147 + L2 LINE L2 3241 3303 -10 1368 153 0 5 chr12 5442871 5443093 -138343362 - AluSg/x SINE Alu -8 304 84 340 333 19 62 chr12 5443799 5443961 -138342494 - MIR SINE MIR -83 179 25 264 294 0 0 chr12 5444398 5444568 -138341887 + (TG)n Simple_repeat Simple_repeat 1 170 0 260 241 224 35 chr12 5446500 5446616 -138339839 - MIR3 SINE MIR -65 143 6 1234 131 60 0 chr12 5446945 5447144 -138339311 - MER20 DNA MER1_type -5 214 4 349 233 233 7 chr12 5448168 5448318 -138338137 + MER5A DNA MER1_type 6 189 0 181 333 0 71 chr12 5449357 5449456 -138336999 + L2 LINE L2 2996 3087 -185 1870 141 7 3 chr12 5449579 5449877 -138336578 + AluSg SINE Alu 1 299 -11 520 272 10 57 chr12 5449877 5450080 -138336375 + MIR SINE MIR 62 254 -8 221 269 71 14 chr12 5451321 5451427 -138335028 + MIR SINE MIR 32 142 -66 509 253 91 19 chr12 5451567 5451904 -138334551 + MLT1J2 LTR MaLR 13 442 -8 332 341 24 8 chr12 5451986 5452112 -138334343 + MIR3 SINE MIR 30 157 -51 261 333 53 26 chr12 5452473 5452587 -138333868 + MER91C DNA MER1_type 24 140 0 * 506 336 68 65 chr12 5452587 5452963 -138333492 + L2 LINE L2 2891 3267 -5 226 296 45 11 chr12 5454214 5454302 -138332153 + L2 LINE L2 3139 3229 -43 1373 248 47 77 chr12 5454364 5454695 -138331760 + MER77 LTR ERV1 121 477 -200 1798 153 0 7 chr12 5454695 5454989 -138331466 - AluSx SINE Alu -20 292 1 1373 248 47 77 chr12 5454989 5455181 -138331274 + MER77 LTR ERV1 477 673 -4 866 289 29 8 chr12 5455648 5455894 -138330561 - MIR SINE MIR 0 262 12 356 250 0 0 chr12 5456247 5456327 -138330128 + MER116 DNA Mariner 1 80 0 327 304 99 44 chr12 5456560 5456741 -138329714 + MIR SINE MIR 1 191 -71 254 209 105 35 chr12 5457735 5457821 -138328634 + L2 LINE L2 2969 3060 -212 * 484 355 69 43 chr12 5457816 5457909 -138328546 - L2 LINE L2 0 3313 3224 2463 56 0 0 chr12 5457909 5458215 -138328240 + AluY SINE Alu 1 306 -5 484 355 69 43 chr12 5458215 5458467 -138327988 - L2 LINE L2 -89 3224 2959 250 289 22 11 chr12 5459293 5459383 -138327072 + MIR SINE MIR 65 155 -107 1239 197 16 100 chr12 5459873 5460193 -138326262 + AluJb SINE Alu 2 294 -8 1380 196 36 0 chr12 5461192 5461493 -138324962 - MER33 DNA MER1_type -8 316 5 301 274 32 73 chr12 5463736 5463860 -138322595 + L2 LINE L2 3195 3313 0 252 149 0 0 chr12 5463860 5463907 -138322548 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2480 160 24 12 chr12 5464003 5464427 -138322028 + MSTB1 LTR MaLR 4 432 0 565 101 13 0 chr12 5464694 5464773 -138321682 - MADE1 DNA Mariner 0 80 1 240 304 13 38 chr12 5465823 5465902 -138320553 - L2 LINE L2 -5 3267 3191 369 75 0 0 chr12 5466560 5466613 -138319842 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 348 331 21 35 chr12 5466648 5466793 -138319662 + MIR SINE MIR 49 191 -71 399 253 131 19 chr12 5467614 5467774 -138318681 + MIR SINE MIR 30 204 -58 265 313 45 37 chr12 5468425 5468559 -138317896 - MER5A DNA MER1_type -5 184 50 * 419 335 13 13 chr12 5468443 5468595 -138317860 + MER5A DNA MER1_type 35 186 -3 213 275 14 14 chr12 5468975 5469044 -138317411 + GA-rich Low_complexity Low_complexity 4 72 0 888 212 4 11 chr12 5469208 5469477 -138316978 + AluY SINE Alu 44 310 -1 290 329 72 0 chr12 5469478 5469645 -138316810 - L1ME LINE L1 -300 5870 5692 264 344 32 0 chr12 5469661 5469818 -138316637 - L1ME LINE L1 -478 5643 5482 208 244 0 35 chr12 5469925 5470011 -138316444 + A-rich Low_complexity Low_complexity 2 84 0 699 264 148 15 chr12 5470744 5471250 -138315205 - L1ME3 LINE L1 -287 5883 5300 376 276 24 0 chr12 5471542 5471665 -138314790 - L1MA10 LINE L1 -3 6331 6206 623 119 0 0 chr12 5471668 5471752 -138314703 + AluJ/FLAM SINE Alu 2 85 -227 304 315 34 68 chr12 5471779 5471815 -138314640 - L1MA10 LINE L1 -311 6001 5966 2799 210 34 61 chr12 5471815 5472171 -138314284 - L1MD3 LINE L1 -743 5403 5039 249 98 0 0 chr12 5472171 5472212 -138314243 + (CA)n Simple_repeat Simple_repeat 2 42 0 2799 210 34 61 chr12 5472212 5472412 -138314043 - L1MD3 LINE L1 -1107 5039 5492 2439 62 3 0 chr12 5472412 5472720 -138313735 - AluY SINE Alu -2 309 1 2799 210 34 61 chr12 5472720 5473477 -138312978 - L1MD3 LINE L1 -653 5493 4717 278 137 20 0 chr12 5475586 5475637 -138310818 + MER53 DNA DNA 138 189 0 294 293 57 19 chr12 5475809 5475915 -138310540 + L2 LINE L2 3195 3304 -9 1187 111 38 64 chr12 5475999 5476234 -138310221 - L1PA11 LINE L1 0 6174 5946 1659 141 39 0 chr12 5476234 5476517 -138309938 - L1P LINE L1 -1502 4644 4351 306 345 42 18 chr12 5480188 5480356 -138306099 - MIR3 SINE MIR -1 207 36 971 264 115 21 chr12 5480375 5480844 -138305611 + MER113 DNA MER1_type? 1 513 -8 193 343 29 20 chr12 5482357 5482459 -138303996 - MIR SINE MIR -63 145 43 565 253 28 50 chr12 5483066 5483248 -138303207 + MIR3 SINE MIR 9 186 -22 2609 234 82 17 chr12 5483733 5484842 -138301613 - MER69B DNA AcHobo 0 1226 1 358 294 123 28 chr12 5485154 5485365 -138301090 + L1ME4a LINE L1 5730 5960 -161 1325 223 38 11 chr12 5485531 5485818 -138300637 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5486017 5486051 -138300404 + GA-rich Low_complexity Low_complexity 1 34 0 346 282 0 0 chr12 5487105 5487190 -138299265 - L2 LINE L2 -3 3310 3226 579 288 21 46 chr12 5488446 5488686 -138297769 - L1ME LINE L1 -314 5807 5574 266 299 11 35 chr12 5489251 5489338 -138297117 - L2 LINE L2 0 3272 3188 2473 197 85 4 chr12 5489538 5490080 -138296375 - L1MB7 LINE L1 -8 6176 5591 674 303 118 36 chr12 5490203 5490794 -138295661 - L1ME4a LINE L1 -209 5912 5348 352 374 14 0 chr12 5491148 5491287 -138295168 + L3b LINE CR1 1257 1397 -186 385 243 84 24 chr12 5491608 5491771 -138294684 - MIR SINE MIR -19 189 17 574 270 44 22 chr12 5491979 5492180 -138294275 + MIR SINE MIR 60 262 0 237 196 0 0 chr12 5492242 5492298 -138294157 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5492305 5492353 -138294102 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5492506 5492676 -138293779 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5493307 5493423 -138293032 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5493558 5493579 -138292876 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5494257 5494371 -138292084 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5495402 5495536 -138290919 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5495813 5496131 -138290324 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5497068 5497117 -138289338 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5497985 5498045 -138288410 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5498108 5498301 -138288154 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5499414 5499461 -138286994 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5499881 5500223 -138286232 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5500244 5500728 -138285727 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5500728 5501140 -138285315 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5501142 5501464 -138284991 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5502028 5502218 -138284237 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5502387 5502643 -138283812 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5503683 5503818 -138282637 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5503844 5504009 -138282446 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5504114 5504267 -138282188 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5504623 5504791 -138281664 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5504913 5505223 -138281232 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5505399 5505502 -138280953 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5505758 5505855 -138280600 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5506668 5506971 -138279484 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5507514 5507825 -138278630 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5508472 5508676 -138277779 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5508820 5509148 -138277307 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5510035 5510305 -138276150 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5510661 5510818 -138275637 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5511332 5511367 -138275088 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5512266 5512351 -138274104 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5512583 5512629 -138273826 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5513139 5513495 -138272960 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5514526 5515582 -138270873 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5515587 5515769 -138270686 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5515967 5516098 -138270357 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5516098 5516368 -138270087 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5516368 5516409 -138270046 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5516935 5517096 -138269359 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5517161 5517612 -138268843 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5518465 5518546 -138267909 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5519452 5519650 -138266805 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5519650 5519806 -138266649 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5519806 5519885 -138266570 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5520219 5520299 -138266156 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5520538 5520734 -138265721 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5520804 5520839 -138265616 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5521704 5522010 -138264445 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5522072 5522270 -138264185 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5522337 5522408 -138264047 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5523107 5523159 -138263296 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5523159 5523194 -138263261 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5524888 5524984 -138261471 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5528055 5528550 -138257905 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5530239 5530265 -138256190 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5530265 5530303 -138256152 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5530303 5530407 -138256048 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5530441 5530510 -138255945 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5530527 5530954 -138255501 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5531329 5531412 -138255043 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5531421 5531517 -138254938 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5531586 5531876 -138254579 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5533287 5533327 -138253128 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5533556 5533659 -138252796 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5533669 5534029 -138252426 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5534054 5534110 -138252345 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5534299 5534440 -138252015 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5534755 5535034 -138251421 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5535085 5535261 -138251194 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5536777 5536965 -138249490 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5537253 5537538 -138248917 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5537538 5537573 -138248882 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5537573 5537704 -138248751 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5537596 5537887 -138248568 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5539342 5539460 -138246995 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5539791 5539874 -138246581 + MIR SINE MIR 22 103 -105 1348 208 75 13 chr12 5544546 5544854 -138241601 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5545121 5545143 -138241312 + AT_rich Low_complexity Low_complexity 1 22 0 2324 160 149 9 chr12 5546427 5546890 -138239565 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5547455 5547499 -138238956 + (CA)n Simple_repeat Simple_repeat 2 45 0 393 292 32 50 chr12 5548826 5549045 -138237410 + LTR16C LTR ERVL 253 467 -24 754 284 34 13 chr12 5549650 5549886 -138236569 + LTR16A1 LTR ERVL 217 457 0 519 274 57 6 chr12 5550077 5550234 -138236221 + MIR SINE MIR 20 184 -78 243 206 89 123 chr12 5553387 5553533 -138232922 - MIR SINE MIR -66 142 2 1672 159 18 4 chr12 5554020 5554296 -138232159 - MLT1A1 LTR MaLR 0 365 86 2765 148 31 67 chr12 5554296 5554493 -138231962 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5554493 5554849 -138231606 - THE1B LTR MaLR 0 364 1 2765 148 31 67 chr12 5554849 5555173 -138231282 - LTR26B LTR ERV1 -203 328 29 1327 155 155 8 chr12 5555174 5555337 -138231118 - AluSx SINE Alu -16 296 158 510 62 0 104 chr12 5555337 5555433 -138231022 - L1PA5 LINE L1 0 6154 6069 1327 155 155 8 chr12 5555433 5555527 -138230928 - AluSx SINE Alu -154 158 1 321 51 0 0 chr12 5555527 5555566 -138230889 - LTR26B LTR ERV1 -492 39 1 409 176 47 24 chr12 5555569 5555654 -138230801 - MLT1A1 LTR MaLR -287 87 1 292 310 47 21 chr12 5555697 5555851 -138230604 - MIR3 SINE MIR -64 144 3 211 284 15 0 chr12 5557979 5558046 -138228409 + L2 LINE L2 3246 3313 0 305 302 9 9 chr12 5558059 5558165 -138228290 - MER69 DNA AcHobo 0 2526 2421 228 281 105 26 chr12 5559713 5559827 -138226628 + MIR SINE MIR 24 146 -62 183 231 0 0 chr12 5559941 5559980 -138226475 + L2 LINE L2 3255 3293 -20 258 32 0 0 chr12 5560773 5560804 -138225651 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1982 126 7 3 chr12 5560813 5561098 -138225357 - AluSg SINE Alu -24 286 1 1133 81 0 0 chr12 5561098 5561234 -138225221 - AluSq/x SINE Alu -177 136 1 208 268 30 105 chr12 5561559 5561703 -138224752 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5561737 5561908 -138224547 + (TA)n Simple_repeat Simple_repeat 1 176 0 283 200 12 71 chr12 5563488 5563573 -138222882 + MIR SINE MIR 101 180 -82 436 267 96 37 chr12 5563983 5564170 -138222285 - MIR SINE MIR -42 220 23 234 279 15 0 chr12 5565488 5565556 -138220899 - MARNA DNA Mariner -106 480 412 2027 101 62 7 chr12 5567334 5567622 -138218833 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5567757 5567787 -138218668 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 291 45 22 chr12 5568297 5568431 -138218024 - MLT1J2 LTR MaLR -239 211 75 251 281 94 31 chr12 5569914 5570042 -138216413 + L2 LINE L2 3178 3313 0 1681 151 7 53 chr12 5571140 5571444 -138215011 - AluJo SINE Alu -22 290 1 396 147 11 53 chr12 5571579 5571674 -138214781 + MIR SINE MIR 61 151 -111 1735 205 108 24 chr12 5572036 5572461 -138213994 - MLT1C LTR MaLR -6 461 1 326 284 57 28 chr12 5572645 5572821 -138213634 + MER5A DNA MER1_type 3 183 -6 268 258 76 61 chr12 5575793 5575925 -138210530 - L2 LINE L2 0 3313 3180 2183 101 7 16 chr12 5576158 5576465 -138209990 - AluY SINE Alu -7 304 1 697 269 111 1 chr12 5576707 5576918 -138209537 + MIR SINE MIR 5 237 -25 724 213 8 130 chr12 5577031 5577270 -138209185 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5577747 5577810 -138208645 + AT_rich Low_complexity Low_complexity 1 63 0 687 281 31 13 chr12 5577881 5578109 -138208346 - MIR SINE MIR -10 252 21 662 141 67 15 chr12 5578124 5578259 -138208196 + Ricksha_a DNA DNA 12 153 -1028 * 5639 190 49 51 chr12 5578227 5578995 -138207460 + Ricksha DNA DNA 1712 2481 -765 2453 68 0 0 chr12 5578995 5579312 -138207143 - AluY SINE Alu 0 317 1 5639 190 49 51 chr12 5579312 5580078 -138206377 + Ricksha DNA DNA 2481 3246 0 397 232 176 0 chr12 5580260 5580385 -138206070 + MER96 DNA MER1_type? 27 173 -2 5541 150 27 9 chr12 5580618 5581547 -138204908 - L1MA9 LINE L1 0 6312 5367 267 250 0 0 chr12 5581984 5582040 -138204415 + MIR SINE MIR 76 131 -77 182 265 0 0 chr12 5582411 5582460 -138203995 - L2 LINE L2 -1 3312 3264 315 321 0 0 chr12 5582607 5582691 -138203764 - L2 LINE L2 -2 3270 3187 2902 117 2 9 chr12 5582741 5583170 -138203285 + L1PB3 LINE L1 5726 6151 -3 1061 211 5 10 chr12 5583658 5583867 -138202588 - MLT1C LTR MaLR -3 464 257 1728 202 123 40 chr12 5583982 5584421 -138202034 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5584421 5584447 -138202008 + (CA)n Simple_repeat Simple_repeat 2 27 0 1728 202 123 40 chr12 5584447 5584487 -138201968 + MLT2B1 LTR ERVL 485 520 0 567 318 81 0 chr12 5585527 5585763 -138200692 + MIR SINE MIR 5 259 -3 371 246 15 52 chr12 5585875 5586009 -138200446 - MIR3 SINE MIR -4 204 76 223 354 108 49 chr12 5586020 5587024 -138199431 - L2 LINE L2 -15 3257 2099 2511 72 10 0 chr12 5587024 5587331 -138199124 + AluY SINE Alu 1 310 -1 223 354 108 49 chr12 5587331 5587914 -138198541 - L2 LINE L2 -1173 2099 1552 214 239 0 0 chr12 5588185 5588231 -138198224 - MIR SINE MIR -130 78 33 1540 174 83 0 chr12 5589268 5589533 -138196922 + AluJo SINE Alu 1 287 -25 948 271 161 21 chr12 5589611 5590046 -138196409 - MLT1H1 LTR MaLR -19 536 41 687 269 60 39 chr12 5590587 5591045 -138195410 + MLT1H LTR MaLR 22 587 -3 1045 175 18 51 chr12 5591621 5591838 -138194617 + MER20 DNA MER1_type 7 216 -3 1808 237 45 30 chr12 5591974 5592501 -138193954 + L1ME LINE L1 3449 3983 -2163 6529 79 6 12 chr12 5592520 5593397 -138193058 + L1PA10 LINE L1 5298 6168 0 326 47 0 0 chr12 5593397 5593440 -138193015 - MADE1 DNA Mariner -37 43 1 288 333 68 12 chr12 5593518 5593680 -138192775 + MIR SINE MIR 36 206 -56 1259 167 0 5 chr12 5595281 5595485 -138190970 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5596449 5596611 -138189844 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5596774 5597091 -138189364 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5597347 5597499 -138188956 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5598942 5599148 -138187307 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5599202 5599340 -138187115 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5599733 5599841 -138186614 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5599850 5600763 -138185692 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5601750 5601899 -138184556 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5602666 5602827 -138183628 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5603277 5603305 -138183150 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5606390 5607214 -138179241 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5607214 5607318 -138179137 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5607417 5607561 -138178894 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5607657 5608130 -138178325 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5608174 5608412 -138178043 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5608497 5608845 -138177610 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5608858 5609116 -138177339 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5610558 5616576 -138169879 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5617144 5617511 -138168944 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5618292 5618469 -138167986 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5619845 5620051 -138166404 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5620099 5620164 -138166291 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5620185 5620360 -138166095 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5620780 5621598 -138164857 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5621599 5621841 -138164614 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5621848 5621945 -138164510 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5621945 5622328 -138164127 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5622436 5622556 -138163899 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5622565 5622605 -138163850 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5622631 5622846 -138163609 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5623231 5623348 -138163107 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5623416 5623731 -138162724 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5624225 5624300 -138162155 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5624322 5624350 -138162105 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5624596 5624775 -138161680 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5626460 5626649 -138159806 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5627120 5627185 -138159270 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5627820 5628242 -138158213 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5628696 5629239 -138157216 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5629574 5630537 -138155918 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5630620 5630792 -138155663 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5630796 5630903 -138155552 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5630823 5630907 -138155548 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5631449 5631622 -138154833 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5632549 5632675 -138153780 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5633105 5633330 -138153125 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5633480 5633683 -138152772 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5634179 5634232 -138152223 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5634426 5634578 -138151877 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5635691 5635756 -138150699 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5636582 5636603 -138149852 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5637070 5637125 -138149330 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5638326 5638532 -138147923 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5638613 5638748 -138147707 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5639078 5639276 -138147179 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5639276 5639533 -138146922 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5639533 5639794 -138146661 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5639794 5639838 -138146617 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5639869 5640623 -138145832 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5641136 5641504 -138144951 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5641819 5642581 -138143874 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5643492 5643595 -138142860 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5643658 5643810 -138142645 + MER20B DNA MER1_type 43 202 -17 279 348 50 14 chr12 5643856 5643997 -138142458 - MIR3 SINE MIR -58 150 5 541 302 77 32 chr12 5644166 5644407 -138142048 - MIR SINE MIR -6 256 7 1802 176 10 3 chr12 5645018 5645325 -138141130 + AluSx SINE Alu 1 309 -3 11392 152 35 18 chr12 5645329 5648301 -138138154 + L1MA5 LINE L1 3046 6065 -235 5137 75 11 11 chr12 5648312 5648964 -138137491 - L1PA11 LINE L1 0 6174 5523 241 111 67 44 chr12 5648964 5649009 -138137446 + L1MA5 LINE L1 6050 6095 -205 2309 218 55 42 chr12 5650496 5651530 -138134925 - L1MEc LINE L1 -3333 2882 1860 252 221 126 0 chr12 5651530 5651625 -138134830 - Charlie8 DNA MER1_type -2261 156 50 266 227 106 0 chr12 5651754 5651820 -138134635 - L1MC/D LINE L1 -1999 5809 5737 314 252 102 95 chr12 5652052 5652199 -138134256 - MIR3 SINE MIR -28 180 33 253 279 41 141 chr12 5652236 5652455 -138134000 - L3 LINE CR1 -9 1568 1379 2430 66 0 7 chr12 5652455 5652758 -138133697 + AluY SINE Alu 1 301 -10 253 279 41 141 chr12 5652758 5652807 -138133648 - L3 LINE CR1 -198 1379 1327 948 319 125 47 chr12 5652842 5653313 -138133142 - L3 LINE CR1 -412 1165 733 1514 192 0 17 chr12 5653313 5653610 -138132845 + AluJo SINE Alu 1 292 -20 2106 72 8 0 chr12 5653611 5653873 -138132582 + AluSc SINE Alu 44 307 -2 948 319 125 47 chr12 5653873 5654173 -138132282 - L3 LINE CR1 -843 734 331 21 0 0 0 chr12 5654274 5654295 -138132160 + AT_rich Low_complexity Low_complexity 1 21 0 207 240 60 0 chr12 5655331 5655381 -138131074 + MIR3 SINE MIR 118 170 -38 961 204 21 5 chr12 5655454 5655640 -138130815 - MER5A DNA MER1_type 0 189 1 1224 198 107 0 chr12 5655701 5655944 -138130511 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1367 127 23 18 chr12 5655945 5656166 -138130289 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 348 302 112 9 chr12 5656963 5657079 -138129376 - L2 LINE L2 -6 3266 3139 396 245 54 68 chr12 5658250 5658397 -138128058 + MER63A DNA MER1_type 61 205 -5 4398 113 9 3 chr12 5659742 5660379 -138126076 - L1PA16 LINE L1 -180 5986 5346 846 175 11 51 chr12 5660379 5660550 -138125905 + L1PA16 LINE L1 5994 6163 -3 633 251 24 86 chr12 5661092 5661347 -138125108 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5662210 5662239 -138124216 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5662506 5662556 -138123899 + CT-rich Low_complexity Low_complexity 3 51 0 233 345 112 0 chr12 5662745 5662861 -138123594 + L2 LINE L2 3137 3265 -7 2113 132 0 19 chr12 5663123 5663441 -138123014 + AluSx SINE Alu 1 312 0 1350 201 27 20 chr12 5663685 5663983 -138122472 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5664067 5664122 -138122333 + CT-rich Low_complexity Low_complexity 5 59 0 549 314 114 37 chr12 5664441 5664878 -138121577 + L3 LINE CR1 811 1281 -296 313 295 85 0 chr12 5665060 5665189 -138121266 - MIR SINE MIR -42 220 81 7583 47 14 3 chr12 5665609 5667238 -138119217 + L1PA7 LINE L1 4517 6154 0 5112 168 7 8 chr12 5667483 5668375 -138118080 - L1MB7 LINE L1 -1 6183 5293 275 235 286 8 chr12 5670031 5670150 -138116305 + MIR3 SINE MIR 54 205 -3 236 285 73 73 chr12 5670153 5670304 -138116151 + L3b LINE CR1 1293 1443 -140 1798 141 3 37 chr12 5670366 5670665 -138115790 - AluJo SINE Alu -23 289 1 183 214 24 0 chr12 5671288 5671330 -138115125 + L2 LINE L2 3263 3305 -8 386 273 31 72 chr12 5671784 5671978 -138114477 + MIR3 SINE MIR 20 205 -3 451 224 34 84 chr12 5672101 5672280 -138114175 - L2 LINE L2 0 3313 3144 300 359 60 8 chr12 5673266 5673383 -138113072 + L2 LINE L2 3150 3272 0 222 303 8 59 chr12 5673391 5673510 -138112945 - MIR SINE MIR -60 202 90 241 235 0 59 chr12 5673711 5673779 -138112676 + HsTC2 DNA Tc2 28 91 -1807 325 232 0 0 chr12 5674535 5674604 -138111851 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5674821 5674846 -138111609 + AT_rich Low_complexity Low_complexity 1 25 0 3129 235 68 50 chr12 5675366 5676309 -138110146 + L1MB7 LINE L1 16 975 -5567 * 7347 238 53 42 chr12 5676297 5678652 -138107803 + L1MB7 LINE L1 803 3130 -3552 1368 215 79 27 chr12 5678652 5679019 -138107436 + MLT1B LTR MaLR 5 390 0 7347 238 53 42 chr12 5679019 5682345 -138104110 + L1MB7 LINE L1 3130 6620 -62 538 250 183 11 chr12 5682407 5682587 -138103868 - MLT1K LTR MaLR -2 586 376 349 232 158 0 chr12 5682626 5682708 -138103747 - MLT1K LTR MaLR -305 283 189 9366 117 8 30 chr12 5683001 5683686 -138102769 - Tigger1 DNA MER2_type 0 2418 1778 1528 194 3 48 chr12 5683686 5684001 -138102454 - AluJo SINE Alu -11 301 1 9366 117 8 30 chr12 5684001 5684725 -138101730 - Tigger1 DNA MER2_type -640 1778 1040 330 64 0 0 chr12 5684735 5684782 -138101673 + Alu SINE Alu 262 308 0 * 780 254 91 14 chr12 5684779 5685055 -138101400 + MLT1C LTR MaLR 171 467 0 2254 110 0 3 chr12 5685111 5685412 -138101043 + AluSg SINE Alu 1 300 -10 676 68 19 10 chr12 5685415 5685518 -138100937 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 1842 145 68 43 chr12 5685930 5686282 -138100173 - MER46B DNA MER2_type 0 236 1 1002 174 56 0 chr12 5686921 5687099 -138099356 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5687115 5687146 -138099309 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 455 254 8 54 chr12 5687922 5688052 -138098403 - MIR SINE MIR -75 187 64 247 281 79 36 chr12 5688402 5688541 -138097914 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5688656 5688699 -138097756 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 445 255 94 13 chr12 5688841 5688990 -138097465 + MIR3 SINE MIR 27 187 -21 1687 165 0 0 chr12 5690367 5690640 -138095815 - AluJb SINE Alu -39 273 1 298 286 22 11 chr12 5691762 5691853 -138094602 - MIR SINE MIR -61 147 56 2397 91 3 0 chr12 5692220 5692528 -138093927 - AluSg1 SINE Alu 0 309 1 419 258 0 48 chr12 5693410 5693534 -138092921 + MIR3 SINE MIR 5 122 -86 233 253 0 46 chr12 5693877 5693964 -138092491 + MIR SINE MIR 174 256 -6 305 243 9 90 chr12 5694354 5694465 -138091990 + MIR3 SINE MIR 85 186 -22 357 182 149 33 chr12 5694799 5694920 -138091535 + MER5A DNA MER1_type 1 135 -54 248 180 328 0 chr12 5694921 5694982 -138091473 - Tigger5 DNA MER2_type -1 2322 2242 * 298 282 13 0 chr12 5694972 5695050 -138091405 + Tigger5 DNA MER2_type 2242 2320 -3 * 425 190 13 13 chr12 5695050 5695128 -138091327 - Tigger5 DNA MER2_type -2245 78 1 182 241 52 35 chr12 5695235 5695293 -138091162 + L2 LINE L2 3213 3271 -1 477 239 0 0 chr12 5695587 5695675 -138090780 - MIR3 SINE MIR -51 157 70 234 359 34 83 chr12 5695904 5696169 -138090286 + L2 LINE L2 2943 3194 -78 265 211 46 92 chr12 5696743 5696852 -138089603 + L3b LINE CR1 1230 1333 -250 442 285 93 89 chr12 5696928 5697174 -138089281 - MIR SINE MIR -8 254 8 443 253 62 14 chr12 5697174 5697320 -138089135 + MER117 DNA MER1_type 2 154 -43 418 221 11 21 chr12 5697325 5697420 -138089035 + MER117 DNA MER1_type 104 197 0 2670 148 26 16 chr12 5698971 5699465 -138086990 + L1MC2 LINE L1 5846 6344 0 246 128 0 0 chr12 5700582 5700621 -138085834 + (TG)n Simple_repeat Simple_repeat 1 39 0 308 356 22 85 chr12 5700927 5701419 -138085036 - L2 LINE L2 0 3272 2812 557 301 165 54 chr12 5701489 5702047 -138084408 - L2 LINE L2 -707 2607 1988 201 39 0 0 chr12 5702848 5702874 -138083581 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 406 222 9 46 chr12 5703177 5703285 -138083170 + MER20B DNA MER1_type 3 106 -677 459 0 0 0 chr12 5703894 5703945 -138082510 + (TG)n Simple_repeat Simple_repeat 2 52 0 344 321 65 27 chr12 5704430 5704614 -138081841 - MIR3 SINE MIR -15 193 3 1914 174 67 59 chr12 5704988 5705449 -138081006 + MLT1C LTR MaLR 3 467 0 921 265 28 16 chr12 5706306 5706559 -138079896 - MIR SINE MIR -2 260 5 346 292 98 76 chr12 5706852 5707084 -138079371 + L1ME4a LINE L1 5598 5824 -297 2351 68 0 7 chr12 5707084 5707393 -138079062 + AluSc SINE Alu 1 307 -2 346 292 98 76 chr12 5707393 5707486 -138078969 + L1ME4a LINE L1 5824 5914 -207 1498 191 3 31 chr12 5707486 5707805 -138078650 + AluJo SINE Alu 1 310 -2 346 292 98 76 chr12 5707805 5707989 -138078466 + L1ME4a LINE L1 5914 6119 -2 336 150 17 17 chr12 5708278 5708338 -138078117 - MIR SINE MIR -87 175 116 283 321 28 46 chr12 5708435 5708544 -138077911 + MIR SINE MIR 3 109 -153 * 597 275 15 35 chr12 5708536 5708736 -138077719 - L2 LINE L2 0 3313 3118 240 328 90 0 chr12 5708745 5708879 -138077576 + MIR SINE MIR 117 262 0 291 325 149 30 chr12 5710303 5710571 -138075884 + L2 LINE L2 2970 3269 -3 284 250 182 13 chr12 5711826 5711980 -138074475 - MIR SINE MIR -34 228 42 211 282 64 39 chr12 5713271 5713349 -138073106 + MIR SINE MIR 152 231 -31 368 204 194 0 chr12 5713745 5713843 -138072612 - MER5B DNA MER1_type -1 177 61 420 20 0 0 chr12 5714141 5714190 -138072265 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 265 15 0 chr12 5714629 5714697 -138071758 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 230 284 125 11 chr12 5714719 5714807 -138071648 + L2 LINE L2 2677 2774 -540 211 188 16 16 chr12 5715560 5715624 -138070831 + CT-rich Low_complexity Low_complexity 1 64 0 183 298 64 43 chr12 5716559 5716653 -138069802 + L2 LINE L2 3178 3273 -40 248 235 244 17 chr12 5717793 5717908 -138068547 - L2 LINE L2 0 3313 3173 225 324 106 47 chr12 5718224 5718394 -138068061 - MIR3 SINE MIR -17 191 12 422 193 73 37 chr12 5718690 5718799 -138067656 - MIR3 SINE MIR -19 189 77 221 221 301 26 chr12 5720146 5720259 -138066196 + MIR SINE MIR 103 246 -16 476 230 66 71 chr12 5720602 5720798 -138065657 - MIR3 SINE MIR -6 202 8 314 319 43 7 chr12 5722948 5723089 -138063366 - MIR SINE MIR -109 153 8 306 0 0 0 chr12 5724972 5725006 -138061449 + (CA)n Simple_repeat Simple_repeat 2 35 0 471 18 0 0 chr12 5726866 5726922 -138059533 + (TG)n Simple_repeat Simple_repeat 2 57 0 194 73 55 18 chr12 5727446 5727501 -138058954 + (CCGCG)n Simple_repeat Simple_repeat 1 57 0 198 208 0 0 chr12 5729719 5729767 -138056688 + GA-rich Low_complexity Low_complexity 2 49 0 184 293 0 0 chr12 5730744 5730785 -138055670 + MIR3 SINE MIR 139 179 -29 435 319 89 0 chr12 5731598 5731755 -138054700 + MIR SINE MIR 70 240 -22 210 303 72 10 chr12 5733145 5733245 -138053210 + MIR SINE MIR 31 140 -68 184 241 3 24 chr12 5734507 5734603 -138051852 - MIR SINE MIR -3 259 196 224 300 0 0 chr12 5734604 5734664 -138051791 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 265 182 0 78 chr12 5734666 5734743 -138051712 - L1MC4 LINE L1 -1336 6706 6636 452 293 24 37 chr12 5734806 5734970 -138051485 + MIR SINE MIR 24 185 -77 * 537 244 42 36 chr12 5734968 5735125 -138051330 - MIR SINE MIR -62 146 21 331 227 118 27 chr12 5735148 5735258 -138051197 - MIR SINE MIR -63 145 26 424 364 56 0 chr12 5735385 5735547 -138050908 - MER91A DNA MER1_type -25 171 1 2346 51 0 0 chr12 5735995 5736287 -138050168 - AluY SINE Alu -19 292 1 353 322 20 18 chr12 5736766 5736943 -138049512 - MIR3 SINE MIR -28 180 4 200 180 0 60 chr12 5736991 5737041 -138049414 + CT-rich Low_complexity Low_complexity 2 48 0 1719 144 0 61 chr12 5737425 5737738 -138048717 - AluSx SINE Alu -18 294 1 596 326 82 14 chr12 5737918 5738212 -138048243 + L3 LINE CR1 1251 1564 -13 21 36 0 0 chr12 5738379 5738407 -138048048 + AT_rich Low_complexity Low_complexity 1 28 0 1357 178 74 0 chr12 5738490 5738759 -138047696 - AluJb SINE Alu -23 289 1 430 275 15 65 chr12 5738824 5739024 -138047431 + L1ME LINE L1 120 309 -5810 * 1808 225 129 117 chr12 5738992 5739483 -138046972 + L1M4 LINE L1 2463 2946 -3183 753 192 8 0 chr12 5739483 5739613 -138046842 + FLAM_C SINE Alu 7 137 -6 1808 225 129 117 chr12 5739613 5740265 -138046190 + L1M4 LINE L1 2946 3588 -2541 2680 106 0 11 chr12 5740265 5740633 -138045822 - THE1B LTR MaLR 0 364 1 1808 225 129 117 chr12 5740633 5740661 -138045794 + L1M4 LINE L1 3588 3614 -2515 360 0 0 0 chr12 5740661 5740701 -138045754 + (TA)n Simple_repeat Simple_repeat 2 41 0 1808 225 129 117 chr12 5740701 5740850 -138045605 + L1M4 LINE L1 3614 3760 -2369 351 0 0 0 chr12 5740850 5740889 -138045566 + (CA)n Simple_repeat Simple_repeat 2 40 0 1808 225 129 117 chr12 5740889 5741027 -138045428 + L1M4 LINE L1 3760 4073 -2056 1114 239 9 44 chr12 5741029 5741347 -138045108 + L1ME2 LINE L1 5734 6040 -124 673 288 118 37 chr12 5742197 5743499 -138042956 + L1ME LINE L1 715 2172 -4138 308 312 77 17 chr12 5743591 5743953 -138042502 + L1ME LINE L1 2245 2628 -3501 504 186 31 0 chr12 5743980 5744077 -138042378 + MLT1B LTR MaLR 3 102 -272 1335 240 110 6 chr12 5744078 5744432 -138042023 + MSTD LTR MaLR 2 392 -4 837 168 49 27 chr12 5744439 5744748 -138041707 + MLT1B LTR MaLR 97 390 0 717 291 101 6 chr12 5744754 5745101 -138041354 + L1ME LINE L1 2665 3044 -3085 * 764 249 76 22 chr12 5745098 5745283 -138041172 + AluJo SINE Alu 100 294 -18 3766 256 77 43 chr12 5745285 5746172 -138040283 + L1ME LINE L1 3063 3918 -2235 381 43 0 0 chr12 5746172 5746219 -138040236 + (CA)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5746219 5746372 -138040083 + L1ME LINE L1 3918 4064 -2089 419 33 250 0 chr12 5746372 5746432 -138040023 - MADE1 DNA Mariner -4 76 2 3766 256 77 43 chr12 5746432 5748111 -138038344 + L1ME LINE L1 4064 5889 -264 819 183 20 26 chr12 5748122 5748275 -138038180 + FRAM SINE Alu 1 143 -33 250 211 0 0 chr12 5748285 5748337 -138038118 + L1MC4 LINE L1 6652 6703 -1339 231 303 90 0 chr12 5748295 5748384 -138038071 - L1MC4 LINE L1 -1339 6703 6607 * 198 191 0 0 chr12 5748388 5748430 -138038025 + (TA)n Simple_repeat Simple_repeat 2 43 0 825 271 23 26 chr12 5748436 5748702 -138037753 + L1ME3A LINE L1 5878 6142 -11 315 233 159 101 chr12 5749331 5749520 -138036935 + MIR SINE MIR 26 225 -37 696 293 59 43 chr12 5749979 5750235 -138036220 + MIR SINE MIR 3 262 0 368 397 22 6 chr12 5750469 5750648 -138035807 + MIR3 SINE MIR 20 201 -7 24 53 0 0 chr12 5751117 5751155 -138035300 + AT_rich Low_complexity Low_complexity 1 38 0 615 306 73 46 chr12 5751386 5751867 -138034588 + L3 LINE CR1 565 1058 -519 655 199 96 143 chr12 5752273 5752512 -138033943 + MIR SINE MIR 9 227 -35 463 278 30 30 chr12 5752508 5752677 -138033778 + MIR SINE MIR 86 254 -8 * 197 263 156 50 chr12 5753184 5753350 -138033105 + MIR SINE MIR 21 227 -35 213 300 29 14 chr12 5753808 5753878 -138032577 + L2 LINE L2 3201 3271 -1 196 226 32 16 chr12 5754718 5754780 -138031675 + L2 LINE L2 2908 2970 -302 2141 172 5 52 chr12 5754994 5755401 -138031054 + MLT1B LTR MaLR 1 388 -2 192 288 15 61 chr12 5756333 5756399 -138030056 + L2 LINE L2 3209 3271 -1 342 67 0 0 chr12 5756439 5756484 -138029971 + (CA)n Simple_repeat Simple_repeat 1 45 0 246 293 37 0 chr12 5758146 5758228 -138028227 + MIR SINE MIR 91 175 -87 427 306 44 50 chr12 5758638 5758818 -138027637 - MIR3 SINE MIR -10 198 20 240 111 0 0 chr12 5759200 5759236 -138027219 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 336 245 104 43 chr12 5759768 5759931 -138026524 - MIR SINE MIR -33 229 57 400 289 122 44 chr12 5760153 5760537 -138025918 - MLT1J LTR MaLR -25 486 73 559 291 139 36 chr12 5760702 5760925 -138025530 - MIR SINE MIR -14 248 3 343 374 7 7 chr12 5761140 5761279 -138025176 - L2 LINE L2 0 3272 3134 779 296 78 21 chr12 5761606 5762044 -138024411 - L2 LINE L2 -230 3042 2578 2168 107 0 25 chr12 5762072 5762389 -138024066 + AluSx SINE Alu 1 309 -3 352 349 40 7 chr12 5764598 5764750 -138021705 - MIR SINE MIR -81 181 25 788 219 69 94 chr12 5764825 5765217 -138021238 - MLT1B LTR MaLR 0 390 9 2837 0 3 0 chr12 5765289 5765592 -138020863 - AluYa5 SINE Alu -7 304 1 315 309 12 30 chr12 5766630 5766798 -138019657 + GA-rich Low_complexity Low_complexity 1 165 0 261 0 0 0 chr12 5766978 5767007 -138019448 + (CTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr12 5767074 5767104 -138019351 + AT_rich Low_complexity Low_complexity 1 30 0 318 358 20 55 chr12 5767473 5767552 -138018903 + L3 LINE CR1 1373 1453 -124 1346 205 78 61 chr12 5767552 5768011 -138018444 + MLT1C LTR MaLR 1 467 0 318 358 20 55 chr12 5768011 5768132 -138018323 + L3 LINE CR1 1453 1566 -11 21 71 0 0 chr12 5768178 5768220 -138018235 + AT_rich Low_complexity Low_complexity 1 42 0 988 223 19 23 chr12 5768382 5768597 -138017858 + MER20 DNA MER1_type 1 214 -5 287 273 58 33 chr12 5768691 5768812 -138017643 - MIR3 SINE MIR -82 126 3 230 315 74 62 chr12 5771571 5771733 -138014722 - L2 LINE L2 -190 3082 2919 2347 118 128 10 chr12 5771768 5772151 -138014304 - MSTA LTR MaLR 0 428 1 191 310 116 72 chr12 5772501 5772933 -138013522 - L2 LINE L2 -832 2482 2032 947 264 98 46 chr12 5773009 5773490 -138012965 - MLT1J LTR MaLR -3 508 3 662 287 11 0 chr12 5773548 5773722 -138012733 + MER5A DNA MER1_type 13 188 -1 205 326 0 0 chr12 5773769 5773818 -138012637 - L2 LINE L2 -13 3259 3211 2003 148 10 0 chr12 5773858 5774161 -138012294 - AluJb SINE Alu -6 306 1 255 271 85 39 chr12 5774729 5774858 -138011597 - L2 LINE L2 -2 3270 3136 268 268 42 14 chr12 5775792 5775863 -138010592 + MIR3 SINE MIR 87 159 -49 1284 219 107 44 chr12 5777103 5777364 -138009091 + Charlie4a DNA MER1_type 2 245 -1716 3223 83 42 16 chr12 5777364 5777751 -138008704 + MLT2A1 LTR ERVL 1 402 -42 315 0 0 0 chr12 5777751 5777786 -138008669 + (TG)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5777786 5777831 -138008624 + MLT2A1 LTR ERVL 402 444 0 1284 219 107 44 chr12 5777831 5778045 -138008410 + Charlie4a DNA MER1_type 245 507 -1 242 239 28 28 chr12 5778603 5778674 -138007781 + L2 LINE L2 3200 3270 -2 627 248 12 12 chr12 5778777 5778938 -138007517 - MER97a DNA MER1_type? -715 179 19 229 289 99 49 chr12 5779989 5780131 -138006324 - MIR3 SINE MIR -94 114 2 1384 71 0 0 chr12 5780219 5780387 -138006068 + AluY SINE Alu 144 311 0 264 306 36 36 chr12 5781400 5781511 -138004944 - MIR SINE MIR -81 127 17 212 302 12 12 chr12 5781546 5781632 -138004823 + MIR3 SINE MIR 82 167 -41 283 327 184 0 chr12 5782118 5782286 -138004169 + MLT1K LTR MaLR 1 199 -389 883 212 75 37 chr12 5782306 5782547 -138003908 + MLT1K LTR MaLR 326 575 -13 245 251 11 109 chr12 5782861 5783044 -138003411 - HAL1b LINE L1 -1106 242 78 2007 148 0 10 chr12 5783232 5783537 -138002918 - AluSx SINE Alu -10 302 1 471 241 68 0 chr12 5785413 5785546 -138000909 + MIR SINE MIR 109 250 -12 293 209 9 118 chr12 5785747 5785857 -138000598 + L2 LINE L2 3213 3310 -3 2286 113 0 0 chr12 5786380 5786689 -137999766 + AluSq SINE Alu 5 313 0 2063 118 31 3 chr12 5787225 5787513 -137998942 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr12 5787725 5787748 -137998707 + (TG)n Simple_repeat Simple_repeat 2 24 0 187 355 37 45 chr12 5789080 5789322 -137997133 + L2 LINE L2 2816 3055 -217 1937 221 25 2 chr12 5789360 5789758 -137996697 + MER63C DNA MER1_type 3 409 -521 243 0 0 0 chr12 5789762 5789789 -137996666 + (TG)n Simple_repeat Simple_repeat 2 28 0 2073 171 95 16 chr12 5789789 5790222 -137996233 + MER63C DNA MER1_type 436 902 -28 384 328 110 74 chr12 5790278 5790668 -137995787 - L2 LINE L2 -32 3240 2837 21 0 0 0 chr12 5790757 5790778 -137995677 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 5790905 5790929 -137995526 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1703 184 14 0 chr12 5790931 5791209 -137995246 - AluJo SINE Alu -30 282 1 2991 60 2 50 chr12 5792735 5793138 -137993317 - L1PA7 LINE L1 -2 6152 5769 746 189 13 38 chr12 5793268 5793427 -137993028 + L1PB3 LINE L1 5996 6150 -4 3003 168 24 9 chr12 5793436 5793977 -137992478 - L1MC1 LINE L1 -304 6029 5481 216 67 0 0 chr12 5794336 5794366 -137992089 + (CAA)n Simple_repeat Simple_repeat 2 31 0 302 303 193 0 chr12 5794528 5794647 -137991808 + L2 LINE L2 2892 3033 -239 236 347 29 23 chr12 5996217 5996390 -137790065 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5997272 5997329 -137789126 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5997354 5997852 -137788603 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5999761 5999782 -137786673 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5999781 5999809 -137786646 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 6000222 6000373 -137786082 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 6000451 6002224 -137784231 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 6002288 6002316 -137784139 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 6002321 6002555 -137783900 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 6002679 6002701 -137783754 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 6002726 6003530 -137782925 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 6003530 6003891 -137782564 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 6003891 6004125 -137782330 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 6004356 6004683 -137781772 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 6004776 6005018 -137781437 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 6005039 6005360 -137781095 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 6005955 6006066 -137780389 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 6006088 6006351 -137780104 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 6006536 6006802 -137779653 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 6007216 6007244 -137779211 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 6007830 6007858 -137778597 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 6007908 6008357 -137778098 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 6008835 6008983 -137777472 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 6009137 6009200 -137777255 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 6009271 6009628 -137776827 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 6009814 6010293 -137776162 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 6010293 6010604 -137775851 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 6010604 6010798 -137775657 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 6010797 6010886 -137775569 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 6011063 6012003 -137774452 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 6012079 6013442 -137773013 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 6013686 6013796 -137772659 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 6013805 6014081 -137772374 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 6014115 6015845 -137770610 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 6015845 6015865 -137770590 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 6015865 6017488 -137768967 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 6017489 6019315 -137767140 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 6019318 6019465 -137766990 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 6019708 6020005 -137766450 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 6020142 6020294 -137766161 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 6020304 6020459 -137765996 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 6022156 6022198 -137764257 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 6022674 6022872 -137763583 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 6023475 6023621 -137762834 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 6024067 6024484 -137761971 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 6025314 6025403 -137761052 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 6025521 6025634 -137760821 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 6026110 6027075 -137759380 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 6027075 6027109 -137759346 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 6027110 6027290 -137759165 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 6027848 6027923 -137758532 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 6028027 6028515 -137757940 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 6029412 6029722 -137756733 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 6029722 6030024 -137756431 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 6030024 6030166 -137756289 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 6030915 6031282 -137755173 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 6031291 6031627 -137754828 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 6031905 6032208 -137754247 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 6032792 6032910 -137753545 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 6033396 6033802 -137752653 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 6033803 6033988 -137752467 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 6033993 6034302 -137752153 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 6034398 6034861 -137751594 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 6035431 6035724 -137750731 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 6036182 6036256 -137750199 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 6036317 6036506 -137749949 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 6036506 6036643 -137749812 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 6036693 6036714 -137749741 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 6037647 6037868 -137748587 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 6040701 6040872 -137745583 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 6041009 6041049 -137745406 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 6041492 6041531 -137744924 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 6041531 6041651 -137744804 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 6042005 6042157 -137744298 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 6042157 6042417 -137744038 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 6042417 6042512 -137743943 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 6042825 6043006 -137743449 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 6043583 6043663 -137742792 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 6044491 6044573 -137741882 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 6045710 6045741 -137740714 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 6046572 6046699 -137739756 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 6049436 6049775 -137736680 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 6050912 6051037 -137735418 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 6052847 6053077 -137733378 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 6053552 6053788 -137732667 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 6054152 6054341 -137732114 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 6054440 6054607 -137731848 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 6056763 6057141 -137729314 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 6057392 6057696 -137728759 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 6058900 6059042 -137727413 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 6060621 6060768 -137725687 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 6061144 6061263 -137725192 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 6062452 6062521 -137723934 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 6062848 6062979 -137723476 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 6063319 6063396 -137723059 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 6064130 6064339 -137722116 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 6064829 6064921 -137721534 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 6064921 6065210 -137721245 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 6065210 6065633 -137720822 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 6065679 6065776 -137720679 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 6065776 6065864 -137720591 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 6066217 6066324 -137720131 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 6066598 6066767 -137719688 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 6067705 6067869 -137718586 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 6068281 6068312 -137718143 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 6068570 6068881 -137717574 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 6068966 6069043 -137717412 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 6069213 6069383 -137717072 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 6069383 6069412 -137717043 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 6069412 6069539 -137716916 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 6069541 6069614 -137716841 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 6069956 6070126 -137716329 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 6070129 6070211 -137716244 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 6070883 6071088 -137715367 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 6071113 6071553 -137714902 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 6072375 6072669 -137713786 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 6073189 6073333 -137713122 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 6074105 6074462 -137711993 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 6074484 6074611 -137711844 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 6074690 6074754 -137711701 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 6074778 6074905 -137711550 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 6075038 6075262 -137711193 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 6075690 6076120 -137710335 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 6076134 6076273 -137710182 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 6076273 6076570 -137709885 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 6076570 6077272 -137709183 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 6077680 6077987 -137708468 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 6078053 6078293 -137708162 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 6078293 6078320 -137708135 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 6078320 6078446 -137708009 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 6078754 6078775 -137707680 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 6080315 6080705 -137705750 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 6080772 6080823 -137705632 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 6080948 6081162 -137705293 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 6081476 6081539 -137704916 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 6081544 6082069 -137704386 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 6082547 6082651 -137703804 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6083883 6084121 -137702334 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6084134 6084484 -137701971 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6084495 6084666 -137701789 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6084701 6084752 -137701703 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6084833 6084877 -137701578 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6084989 6085285 -137701170 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6085493 6085679 -137700776 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6086386 6086486 -137699969 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6087231 6087260 -137699195 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6088231 6088877 -137697578 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6090172 6090522 -137695933 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6090865 6091030 -137695425 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6091079 6091605 -137694850 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6091958 6092303 -137694152 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6092437 6092617 -137693838 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6093470 6093493 -137692962 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6093493 6093685 -137692770 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6095591 6095618 -137690837 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6096122 6096179 -137690276 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6097006 6097309 -137689146 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6098560 6098615 -137687840 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6098654 6098699 -137687756 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6098939 6099876 -137686579 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6100143 6100243 -137686212 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6102126 6102414 -137684041 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6102803 6102978 -137683477 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6102985 6103066 -137683389 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6103111 6103258 -137683197 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6105010 6105150 -137681305 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6105200 6105473 -137680982 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6105576 6105906 -137680549 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6107001 6107044 -137679411 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6109193 6109284 -137677171 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6109915 6109945 -137676510 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6110921 6110974 -137675481 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6110975 6111048 -137675407 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6111655 6111688 -137674767 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6111853 6111954 -137674501 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6112173 6112288 -137674167 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6112347 6112456 -137673999 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6112543 6112850 -137673605 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6113643 6114204 -137672251 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6114739 6115702 -137670753 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6115801 6115895 -137670560 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6116304 6116334 -137670121 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6116371 6117325 -137669130 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6117379 6117404 -137669051 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6117666 6118724 -137667731 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6118785 6118939 -137667516 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6118951 6119600 -137666855 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6119601 6119717 -137666738 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6119730 6119762 -137666693 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6119762 6119847 -137666608 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6119950 6120220 -137666235 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6120361 6120741 -137665714 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6120761 6120899 -137665556 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6121058 6121151 -137665304 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6122358 6122474 -137663981 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6122922 6123098 -137663357 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6123303 6123428 -137663027 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6123940 6124092 -137662363 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6124092 6124133 -137662322 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6124133 6124264 -137662191 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6124421 6124541 -137661914 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6125032 6125150 -137661305 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6125267 6125398 -137661057 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6125724 6125909 -137660546 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6125910 6126564 -137659891 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6126574 6127181 -137659274 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6127181 6127276 -137659179 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6127688 6127914 -137658541 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6127920 6128248 -137658207 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6128432 6128589 -137657866 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6129251 6129639 -137656816 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6129656 6129818 -137656637 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6129906 6130101 -137656354 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6130272 6130450 -137656005 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6130502 6130790 -137655665 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6130923 6131036 -137655419 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6131809 6131873 -137654582 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6132446 6132690 -137653765 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6132690 6132850 -137653605 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6132892 6133246 -137653209 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6134264 6134354 -137652101 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6134380 6134433 -137652022 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6134448 6134530 -137651925 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6134602 6135003 -137651452 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6135546 6135720 -137650735 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6135975 6136134 -137650321 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6137098 6137207 -137649248 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6138397 6138464 -137647991 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6138545 6138725 -137647730 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6138739 6138980 -137647475 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6140026 6140047 -137646408 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6141095 6141559 -137644896 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6141864 6144002 -137642453 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6144398 6144537 -137641918 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6144594 6144649 -137641806 - L2 LINE L2 -8 3264 3210 303 296 59 15 chr12 6144700 6144835 -137641620 + L1MC5 LINE L1 7773 7913 -48 1526 181 10 36 chr12 6144846 6145155 -137641300 - AluJo SINE Alu -11 301 1 322 294 72 8 chr12 6145158 6145316 -137641139 - MIR SINE MIR -59 203 34 192 40 0 0 chr12 6145830 6145855 -137640600 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6146896 6146961 -137639494 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6147051 6147191 -137639264 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6147246 6147493 -137638962 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6147504 6147568 -137638887 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6147885 6147942 -137638513 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6149019 6149207 -137637248 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6149322 6149392 -137637063 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6149409 6149443 -137637012 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6150000 6150100 -137636355 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6150731 6150964 -137635491 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6151087 6151398 -137635057 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6152927 6153422 -137633033 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6153422 6154631 -137631824 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6154631 6155064 -137631391 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6155541 6155669 -137630786 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6156629 6156691 -137629764 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6158620 6158731 -137627724 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6159148 6159360 -137627095 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6159818 6160120 -137626335 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6160707 6160784 -137625671 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6161624 6161866 -137624589 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6162034 6162220 -137624235 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6163126 6163146 -137623309 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6164113 6164162 -137622293 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6165211 6165363 -137621092 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6165363 6165672 -137620783 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6165672 6165937 -137620518 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6165937 6166229 -137620226 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6166229 6166633 -137619822 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6167220 6168420 -137618035 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6168561 6168600 -137617855 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6168607 6168677 -137617778 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6168827 6168947 -137617508 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6169050 6169077 -137617378 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6169105 6169350 -137617105 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6169569 6169872 -137616583 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6169874 6170167 -137616288 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6170225 6170296 -137616159 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6170382 6171467 -137614988 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6171467 6171776 -137614679 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6171788 6175073 -137611382 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6175073 6175121 -137611334 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6175227 6175340 -137611115 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6175403 6175486 -137610969 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6176065 6176200 -137610255 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6176334 6176361 -137610094 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6176467 6176609 -137609846 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6176668 6176898 -137609557 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6176915 6177126 -137609329 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6177113 6177608 -137608847 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6177850 6178161 -137608294 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6178236 6178342 -137608113 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6178841 6178968 -137607487 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6179004 6179038 -137607417 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6179594 6179664 -137606791 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6180515 6181110 -137605345 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6181118 6181213 -137605242 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6181231 6181318 -137605137 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6181339 6181699 -137604756 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6182198 6182769 -137603686 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6182856 6183079 -137603376 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6183090 6183389 -137603066 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6183503 6183731 -137602724 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6185141 6185195 -137601260 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6185195 6185490 -137600965 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6185490 6185858 -137600597 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6186542 6186985 -137599470 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6186996 6187607 -137598848 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6188930 6189011 -137597444 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6190231 6190375 -137596080 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6190382 6190508 -137595947 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6192987 6193417 -137593038 + LTR33A LTR ERVL 64 523 0 1227 241 60 52 chr12 6193492 6193610 -137592845 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6193610 6193641 -137592814 + (CA)n Simple_repeat Simple_repeat 2 32 0 1227 241 60 52 chr12 6193641 6193698 -137592757 + LTR16C LTR ERVL 183 238 -253 1545 227 13 37 chr12 6193698 6194072 -137592383 + MLT1A1 LTR MaLR 1 365 0 1227 241 60 52 chr12 6194072 6194314 -137592141 + LTR16C LTR ERVL 238 488 -3 1952 135 0 13 chr12 6195815 6196119 -137590336 - AluJo SINE Alu -8 304 5 2256 216 61 22 chr12 6196144 6196540 -137589915 - MER119 DNA MER1_type -5 578 152 2515 62 7 3 chr12 6196540 6196847 -137589608 + AluY SINE Alu 1 308 -3 2256 216 61 22 chr12 6196847 6197005 -137589450 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6197265 6197288 -137589167 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6199413 6199493 -137586962 + (CA)n Simple_repeat Simple_repeat 1 81 0 848 266 192 16 chr12 6199772 6200204 -137586251 + LTR33A LTR ERVL 8 515 -8 516 221 207 9 chr12 6200803 6201016 -137585439 + MIR SINE MIR 8 262 0 2412 146 53 27 chr12 6201380 6201791 -137584664 + MSTA LTR MaLR 1 422 -6 386 178 0 99 chr12 6201849 6201950 -137584505 + L1MB8 LINE L1 4018 4108 -2038 1340 83 0 0 chr12 6201951 6202119 -137584336 - AluY SINE Alu -10 301 134 2499 73 0 0 chr12 6202120 6202421 -137584034 - AluY SINE Alu -10 301 1 5089 180 50 39 chr12 6202421 6204412 -137582043 + L1MB8 LINE L1 4099 6110 -68 311 151 21 54 chr12 6204492 6204585 -137581870 + L1MB8 LINE L1 6089 6178 0 319 309 9 9 chr12 6204623 6204733 -137581722 + MIR SINE MIR 16 125 -83 603 255 121 35 chr12 6206266 6206497 -137579958 + MIR SINE MIR 4 254 -8 340 267 84 0 chr12 6208433 6208564 -137577891 - MER103 DNA DNA -2 164 23 2353 106 0 6 chr12 6208954 6209265 -137577190 - AluSx SINE Alu -3 309 1 558 319 143 21 chr12 6209726 6210161 -137576294 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6213912 6213946 -137572509 + (CA)n Simple_repeat Simple_repeat 2 35 0 246 400 7 0 chr12 6214137 6214287 -137572168 + L2 LINE L2 2554 2704 -610 221 305 93 68 chr12 6214760 6215039 -137571416 - L2 LINE L2 -23 3249 2964 514 237 59 7 chr12 6215996 6216148 -137570307 - MIR SINE MIR -19 243 84 270 56 0 0 chr12 6217788 6217824 -137568631 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 292 45 0 chr12 6218023 6218112 -137568343 + MIR SINE MIR 26 118 -90 608 220 31 31 chr12 6221372 6221531 -137564924 + L1MD2 LINE L1 6199 6357 -2 412 232 33 132 chr12 6221907 6222179 -137564276 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6222258 6222348 -137564107 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6222373 6222440 -137564015 + (TG)n Simple_repeat Simple_repeat 1 67 0 329 250 29 44 chr12 6222787 6222923 -137563532 + MIR SINE MIR 20 153 -109 201 178 22 22 chr12 6223141 6223186 -137563269 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6223186 6223214 -137563241 + (A)n Simple_repeat Simple_repeat 1 28 0 327 215 0 0 chr12 6223870 6223935 -137562520 + MLT1K LTR MaLR 511 575 -13 279 283 243 0 chr12 6224066 6224218 -137562237 - MIR SINE MIR -6 256 68 1789 150 7 29 chr12 6224234 6224540 -137561915 - AluJo SINE Alu -3 309 11 391 182 34 0 chr12 6225762 6225850 -137560605 + L1ME4a LINE L1 5965 6055 -66 * 5370 164 29 41 chr12 6225845 6227280 -137559175 - L1MA10 LINE L1 -2 6220 4788 294 167 0 6 chr12 6227280 6227338 -137559117 - L1MA10 LINE L1 -1579 4455 4400 1136 89 0 13 chr12 6227341 6227498 -137558957 - MER4C LTR ERV1 0 465 311 2481 77 28 25 chr12 6227498 6227851 -137558604 - MER4C LTR ERV1 -111 354 1 5863 229 61 48 chr12 6227851 6229668 -137556787 - L1MA10 LINE L1 -1636 4398 2606 3301 45 0 0 chr12 6229668 6230120 -137556335 - L1PA5 LINE L1 0 6154 5756 5863 229 61 48 chr12 6230120 6231553 -137554902 - L1MA10 LINE L1 -3428 2606 3 3402 250 116 52 chr12 6231913 6233294 -137553161 + L1ME3A LINE L1 18 1486 -4937 1223 269 35 59 chr12 6233295 6233736 -137552719 + L1ME3A LINE L1 1875 2292 -4830 2252 143 0 15 chr12 6233736 6234078 -137552377 + MER1B DNA MER1_type 1 337 0 1223 269 35 59 chr12 6234078 6234378 -137552077 + L1ME3A LINE L1 2292 2598 -4524 409 262 6 38 chr12 6234758 6234941 -137551514 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6235374 6235394 -137551061 + (A)n Simple_repeat Simple_repeat 1 20 0 337 196 14 98 chr12 6235571 6235714 -137550741 + LTR57-int LTR ERVL 622 752 -4591 * 892 209 42 58 chr12 6235656 6236196 -137550259 + MER31-int LTR ERV1 834 2028 -2843 * 899 232 21 64 chr12 6236089 6236369 -137550086 + LTR57-int LTR ERVL 1225 1492 -3851 664 202 65 85 chr12 6236455 6236703 -137549752 + MER31-int LTR ERV1 1737 1979 -2957 * 2077 195 68 102 chr12 6236702 6237747 -137548708 + MER31-int LTR ERV1 3455 4463 -1868 392 214 22 0 chr12 6237747 6237836 -137548619 + MER34B LTR ERV1 470 560 -5 1401 232 129 7 chr12 6237845 6238293 -137548162 + L1ME3A LINE L1 3612 4114 -2827 298 171 53 40 chr12 6238497 6238573 -137547882 - MIR SINE MIR -122 140 64 653 266 65 12 chr12 6238625 6238873 -137547582 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6239405 6239469 -137546986 + GA-rich Low_complexity Low_complexity 2 64 0 638 245 75 75 chr12 6239498 6239751 -137546704 - MER102a DNA MER1_type -4 326 74 233 314 89 32 chr12 6239818 6239942 -137546513 + MIR SINE MIR 4 134 -128 3078 261 60 10 chr12 6240037 6240999 -137545456 + L1ME3A LINE L1 5941 6948 -17 254 298 32 11 chr12 6241826 6241920 -137544535 - MIR SINE MIR -10 252 157 406 272 48 34 chr12 6244147 6244294 -137542161 - MER91A DNA MER1_type -45 151 3 401 286 48 48 chr12 6244306 6244453 -137542002 - MIR SINE MIR -111 151 5 1316 267 170 17 chr12 6244624 6245514 -137540941 + L2 LINE L2 2272 3311 -2 424 309 44 19 chr12 6245517 6245671 -137540784 - MIR SINE MIR -75 133 25 1950 120 45 0 chr12 6245813 6246105 -137540350 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6247237 6247577 -137538878 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6247656 6247791 -137538664 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6247798 6247874 -137538581 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6248070 6248186 -137538269 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6248488 6248791 -137537664 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6249272 6249471 -137536984 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6249777 6250043 -137536412 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6250546 6250677 -137535778 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6252268 6252371 -137534084 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6252435 6252662 -137533793 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6252748 6252780 -137533675 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6252817 6252992 -137533463 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6253200 6253275 -137533180 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6253368 6253439 -137533016 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6253823 6254633 -137531822 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6256083 6256810 -137529645 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6256835 6256965 -137529490 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6256972 6257033 -137529422 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6257266 6257675 -137528780 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6258012 6258091 -137528364 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6258329 6258779 -137527676 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6259972 6260023 -137526432 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6260544 6260622 -137525833 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6260821 6260879 -137525576 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6261057 6261250 -137525205 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6261611 6261696 -137524759 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6261773 6261983 -137524472 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6262305 6262398 -137524057 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6262679 6262741 -137523714 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6262760 6262835 -137523620 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6262865 6263174 -137523281 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6265932 6266070 -137520385 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6266248 6266333 -137520122 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6266369 6266542 -137519913 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6267277 6267669 -137518786 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6267850 6268000 -137518455 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6268842 6268922 -137517533 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6270441 6270894 -137515561 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6272979 6273133 -137513322 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6274184 6275508 -137510947 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6277495 6277601 -137508854 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6279940 6280062 -137506393 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6281104 6281128 -137505327 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6282175 6282393 -137504062 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6282380 6282512 -137503943 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6286371 6286618 -137499837 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6286622 6286811 -137499644 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6286814 6286858 -137499597 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6286864 6286921 -137499534 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6286919 6287102 -137499353 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6287123 6287299 -137499156 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6287311 6287423 -137499032 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6287689 6287832 -137498623 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6288014 6288103 -137498352 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6288122 6288311 -137498144 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6288470 6288669 -137497786 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6288703 6289056 -137497399 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6289142 6289228 -137497227 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6290896 6290996 -137495459 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6291131 6291292 -137495163 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6291526 6291652 -137494803 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6292003 6292160 -137494295 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6292403 6292763 -137493692 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6292763 6292838 -137493617 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6292838 6292874 -137493581 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6292874 6293449 -137493006 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6293441 6297082 -137489373 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6297082 6297382 -137489073 - THE1A LTR MaLR 0 355 55 1171 220 48 10 chr12 6347409 6347718 -137438737 + L1MC4a LINE L1 5639 5959 -1849 1776 166 31 3 chr12 6347767 6348057 -137438398 + AluJb SINE Alu 1 298 -14 2341 62 0 0 chr12 6348060 6348336 -137438119 + AluY SINE Alu 1 276 -35 4042 174 16 3 chr12 6348388 6349062 -137437393 - L1MB1 LINE L1 -6 6162 5475 342 0 0 0 chr12 6349062 6349100 -137437355 + (TG)n Simple_repeat Simple_repeat 2 39 0 4042 174 16 3 chr12 6349100 6349178 -137437277 - L1MB1 LINE L1 -693 5475 5400 306 265 191 37 chr12 6349876 6350065 -137436390 + MIR SINE MIR 31 248 -14 2100 107 0 0 chr12 6350216 6350487 -137435968 + AluSg SINE Alu 37 307 -3 402 290 66 48 chr12 6352145 6352257 -137434198 + L1ME2 LINE L1 5709 5818 -356 1919 167 0 0 chr12 6352257 6352562 -137433893 + AluJb SINE Alu 1 305 -7 402 290 66 48 chr12 6352562 6352673 -137433782 + L1ME2 LINE L1 5818 5940 -234 1195 191 36 13 chr12 6352682 6352985 -137433470 + L1MC3 LINE L1 7473 7782 -3 616 173 48 48 chr12 6353537 6353705 -137432750 - MER53 DNA DNA -19 170 3 489 283 40 80 chr12 6353742 6353821 -137432634 - MIR SINE MIR -44 218 137 2165 143 0 3 chr12 6353821 6354129 -137432326 - AluSx SINE Alu -3 309 3 489 283 40 80 chr12 6354129 6354275 -137432180 - MIR SINE MIR -125 137 2 238 266 31 16 chr12 6354618 6354682 -137431773 + L3b LINE CR1 1503 1567 -16 2326 100 0 3 chr12 6354701 6355000 -137431455 - AluSg SINE Alu -12 298 1 315 260 133 87 chr12 6355072 6355222 -137431233 - MIR SINE MIR -1 261 105 * 1011 271 89 39 chr12 6355221 6355682 -137430773 - L2 LINE L2 0 3313 2830 2518 68 0 0 chr12 6355961 6356257 -137430198 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6356291 6356416 -137430039 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2293 91 0 31 chr12 6356841 6357160 -137429295 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6357852 6358004 -137428451 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6359266 6359566 -137426889 + (CA)n Simple_repeat Simple_repeat 1 300 0 478 252 208 6 chr12 6360136 6360295 -137426160 + MIR SINE MIR 37 227 -35 2325 129 151 0 chr12 6360810 6361214 -137425241 + MER4C LTR ERV1 1 465 0 915 322 140 7 chr12 6362104 6362859 -137423596 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6364734 6364915 -137421540 + CT-rich Low_complexity Low_complexity 3 178 0 301 250 0 62 chr12 6364936 6365080 -137421375 + CT-rich Low_complexity Low_complexity 3 137 0 261 297 17 51 chr12 6365304 6365422 -137421033 - L2 LINE L2 -453 2861 2748 287 273 63 98 chr12 6365723 6366133 -137420322 + L2 LINE L2 2466 2861 -453 326 285 0 42 chr12 6366357 6366649 -137419806 + GA-rich Low_complexity Low_complexity 1 279 0 312 307 0 28 chr12 6366692 6366871 -137419584 + GA-rich Low_complexity Low_complexity 4 177 0 339 304 0 28 chr12 6366892 6367073 -137419382 + GA-rich Low_complexity Low_complexity 3 178 0 276 235 0 0 chr12 6367862 6367930 -137418525 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 204 254 18 91 chr12 6368121 6368231 -137418224 + L2 LINE L2 2901 3002 -270 966 185 16 22 chr12 6368448 6368632 -137417823 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6369575 6369647 -137416808 + L2 LINE L2 3168 3239 -33 550 214 29 0 chr12 6370117 6370220 -137416235 - MER5B DNA MER1_type -1 177 72 181 200 29 0 chr12 6370216 6370251 -137416204 + MER5B DNA MER1_type 142 177 -1 * 1823 175 26 48 chr12 6370345 6370676 -137415779 - L1M LINE L1 -743 5403 5120 1408 212 38 46 chr12 6370676 6371044 -137415411 + MLT1A1 LTR MaLR 1 365 0 1823 175 26 48 chr12 6371044 6371246 -137415209 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6371261 6371296 -137415159 + AT_rich Low_complexity Low_complexity 1 35 0 2633 172 13 2 chr12 6371342 6371909 -137414546 - L1M2 LINE L1 -559 5753 5174 380 364 59 62 chr12 6372184 6372827 -137413628 - L1MEc LINE L1 -5700 696 56 350 170 0 0 chr12 6372831 6372898 -137413557 - Alu SINE Alu -250 53 1 2362 110 0 13 chr12 6372914 6373222 -137413233 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr12 6373285 6373310 -137413145 + AT_rich Low_complexity Low_complexity 1 25 0 2352 89 17 0 chr12 6373312 6373614 -137412841 + AluSc SINE Alu 1 307 -2 201 298 106 21 chr12 6373758 6373852 -137412603 - L2 LINE L2 -12 3260 3159 799 208 48 34 chr12 6374069 6374276 -137412179 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6374441 6374485 -137411970 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3890 179 34 1 chr12 6374934 6375665 -137410790 + L1MB7 LINE L1 5427 6181 -3 995 248 46 94 chr12 6375665 6376432 -137410023 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6376700 6376721 -137409734 + AT_rich Low_complexity Low_complexity 1 21 0 517 269 82 39 chr12 6376957 6377165 -137409290 + L2 LINE L2 2842 3058 -255 5025 101 22 14 chr12 6377186 6377637 -137408818 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6377637 6377692 -137408763 + (TG)n Simple_repeat Simple_repeat 2 56 0 5025 101 22 14 chr12 6377692 6378041 -137408414 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6379347 6379371 -137407084 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6379609 6379633 -137406822 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6379675 6379789 -137406666 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 540 309 99 4 chr12 6380719 6380952 -137405503 - MIR SINE MIR -6 256 2 527 224 40 59 chr12 6381917 6382069 -137404386 + MIR3 SINE MIR 36 184 -24 349 300 114 0 chr12 6382581 6382721 -137403734 - MIR SINE MIR -75 187 32 2450 84 0 0 chr12 6387324 6387620 -137398835 + AluSc SINE Alu 1 296 -13 944 302 102 26 chr12 6388206 6388666 -137397789 + L2 LINE L2 2255 2749 -565 761 366 36 5 chr12 6388694 6389115 -137397340 + L1ME LINE L1 32 465 -5605 631 293 37 73 chr12 6389332 6389597 -137396858 + L1ME LINE L1 525 706 -5364 3750 42 0 0 chr12 6389597 6390047 -137396408 - L1PA3 LINE L1 -3 6152 5703 631 293 37 73 chr12 6390047 6390381 -137396074 + L1ME LINE L1 706 1051 -5019 2779 123 136 6 chr12 6390386 6390892 -137395563 + Tigger3b DNA MER2_type 1 572 -659 924 138 12 31 chr12 6390893 6391053 -137395402 + FRAM SINE Alu 20 176 0 * 4032 118 39 8 chr12 6391038 6391685 -137394770 + Tigger3b DNA MER2_type 565 1231 0 1382 259 150 32 chr12 6391685 6392785 -137393670 + L1MC/D LINE L1 1247 2673 -3934 1770 181 0 7 chr12 6392792 6393091 -137393364 + AluJb SINE Alu 11 307 -5 3741 245 65 46 chr12 6393277 6393311 -137393144 + L1MC/D LINE L1 2641 2673 -3753 1885 161 30 3 chr12 6393311 6393610 -137392845 + AluJo SINE Alu 1 307 -5 3741 245 65 46 chr12 6393610 6394427 -137392028 + L1MC/D LINE L1 2673 3473 -2953 187 53 26 26 chr12 6394427 6394465 -137391990 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3741 245 65 46 chr12 6394465 6395227 -137391228 + L1MC/D LINE L1 3473 4286 -2140 3668 116 6 4 chr12 6395229 6395739 -137390716 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6395745 6396200 -137390255 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6396200 6396565 -137389890 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6396565 6396913 -137389542 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6396913 6397226 -137389229 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6397226 6397915 -137388540 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6398041 6398136 -137388319 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6398303 6398597 -137387858 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6398597 6398678 -137387777 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6400647 6400680 -137385775 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6401401 6401485 -137384970 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6401486 6401528 -137384927 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6402891 6403147 -137383308 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6403189 6403217 -137383238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6410309 6410407 -137376048 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6410675 6410780 -137375675 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6411343 6411463 -137374992 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6411515 6411966 -137374489 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6411966 6412248 -137374207 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6412252 6412294 -137374161 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6412294 6412645 -137373810 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6412645 6412921 -137373534 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6412921 6413757 -137372698 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6413848 6414135 -137372320 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6414138 6414455 -137372000 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6414472 6414598 -137371857 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6414681 6414891 -137371564 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6415423 6415500 -137370955 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6415500 6415528 -137370927 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6415573 6415688 -137370767 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6415737 6415872 -137370583 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6416001 6416046 -137370409 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6417727 6417906 -137368549 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6417947 6418402 -137368053 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6418452 6418589 -137367866 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6418591 6418656 -137367799 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6418782 6419227 -137367228 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6420472 6420563 -137365892 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6420612 6420690 -137365765 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6421043 6421236 -137365219 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6421273 6421581 -137364874 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6421640 6421818 -137364637 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6421959 6422352 -137364103 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6423006 6423030 -137363425 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6425221 6425246 -137361209 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6425311 6425432 -137361023 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6425504 6425555 -137360900 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6425555 6425700 -137360755 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6425875 6425916 -137360539 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6426453 6426799 -137359656 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6427285 6427434 -137359021 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6427951 6428006 -137358449 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6427976 6428050 -137358405 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6428093 6428152 -137358303 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6429318 6429505 -137356950 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6430663 6430754 -137355701 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6431085 6431107 -137355348 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6431787 6431999 -137354456 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6432551 6432785 -137353670 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6432800 6432822 -137353633 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6432822 6432850 -137353605 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6433033 6433338 -137353117 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6433779 6433821 -137352634 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6434252 6434845 -137351610 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6434845 6435153 -137351302 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6435153 6435420 -137351035 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6435544 6435588 -137350867 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6435610 6436714 -137349741 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6436811 6436875 -137349580 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6437003 6437210 -137349245 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6437226 6437308 -137349147 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6437307 6437502 -137348953 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6437490 6437857 -137348598 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6437859 6438119 -137348336 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6438119 6438370 -137348085 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6438370 6438453 -137348002 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6438464 6438763 -137347692 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6438763 6438799 -137347656 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6438799 6439639 -137346816 + L1MC4a LINE L1 3986 4846 -1300 7773 220 38 33 chr12 6439801 6440819 -137345636 + L1MB1 LINE L1 2596 3608 -3957 2115 103 0 14 chr12 6440819 6441100 -137345355 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6441100 6441129 -137345326 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7773 220 38 33 chr12 6441129 6443221 -137343234 + L1MB1 LINE L1 3607 5784 -1781 4986 160 19 17 chr12 6443203 6443752 -137342703 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6443752 6443792 -137342663 + (CA)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6443792 6444466 -137341989 + L1MB1 LINE L1 6896 7581 -6 1684 220 58 76 chr12 6444471 6445061 -137341394 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6447010 6447030 -137339425 + (TG)n Simple_repeat Simple_repeat 2 21 0 2605 57 0 0 chr12 6447031 6447327 -137339128 - AluY SINE Alu -15 296 1 1833 270 144 11 chr12 6448110 6449154 -137337301 - L2 LINE L2 -5 3308 2128 242 254 34 0 chr12 6449164 6449223 -137337232 - MIR SINE MIR -63 145 85 240 376 120 0 chr12 6449487 6449612 -137336843 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6449617 6449640 -137336815 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 447 253 96 7 chr12 6450683 6450829 -137335626 - MIR3 SINE MIR -23 185 27 487 239 32 134 chr12 6451950 6452197 -137334258 - MIR SINE MIR -14 248 27 202 256 110 12 chr12 6452527 6452609 -137333846 - MIR SINE MIR -73 135 46 182 224 0 20 chr12 6452973 6453022 -137333433 - L2 LINE L2 -467 2847 2800 259 254 16 0 chr12 6454733 6454796 -137331659 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6456051 6456112 -137330343 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 481 200 9 9 chr12 6456671 6456781 -137329674 - MER3 DNA MER1_type 0 209 100 918 150 0 0 chr12 6457415 6457548 -137328907 - FLAM_C SINE Alu -10 133 1 2317 117 3 0 chr12 6459068 6459376 -137327079 + AluSx SINE Alu 1 309 -3 228 273 162 0 chr12 6460578 6460677 -137325778 - MIR SINE MIR -117 145 31 1480 156 19 0 chr12 6460982 6461239 -137325216 + L1MA5 LINE L1 6037 6298 -2 270 298 163 51 chr12 6461260 6461438 -137325017 + L3 LINE CR1 1190 1387 -190 * 467 260 72 20 chr12 6461432 6461744 -137324711 + L2 LINE L2 2758 3082 -231 1441 183 83 40 chr12 6461792 6462164 -137324291 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6462170 6462210 -137324245 + (CA)n Simple_repeat Simple_repeat 2 41 0 391 200 62 0 chr12 6462226 6462306 -137324149 + L2 LINE L2 3229 3313 0 6421 70 10 6 chr12 6462710 6463604 -137322851 + L1P LINE L1 1611 2508 -3638 429 308 77 18 chr12 6464843 6465012 -137321443 + MER5A DNA MER1_type 10 188 -1 2106 128 0 10 chr12 6465072 6465368 -137321087 + AluSx SINE Alu 1 293 -19 947 61 0 0 chr12 6466567 6466682 -137319773 + AluSc SINE Alu 194 308 -1 2566 59 3 0 chr12 6466684 6466991 -137319464 + AluY SINE Alu 1 308 -3 236 271 102 0 chr12 6466991 6467050 -137319405 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6467050 6467357 -137319098 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6467361 6467416 -137319039 + (CATA)n Simple_repeat Simple_repeat 1 56 0 529 275 48 16 chr12 6468561 6468750 -137317705 + MER91A DNA MER1_type 1 195 -1 1656 100 6 108 chr12 6470117 6470505 -137315950 + Tigger4(Zombi) DNA MER2_type 1 2731 0 238 190 66 66 chr12 6470547 6470630 -137315825 - MIR SINE MIR -60 148 69 724 250 185 29 chr12 6471087 6471607 -137314848 + L1ME4a LINE L1 5519 6119 -2 236 267 124 19 chr12 6474299 6474460 -137311995 + MIR3 SINE MIR 24 201 -7 263 253 58 35 chr12 6474593 6474680 -137311775 - MIR3 SINE MIR -15 193 105 348 274 66 23 chr12 6474867 6475002 -137311453 - MIR SINE MIR -67 141 3 485 188 80 212 chr12 6475279 6475474 -137310981 + MER5C DNA MER1_type 1 220 -104 2251 114 0 16 chr12 6475474 6475782 -137310673 + AluSx SINE Alu 1 303 -9 2488 55 3 0 chr12 6475782 6476073 -137310382 - AluY SINE Alu -19 292 1 485 188 80 212 chr12 6476073 6476201 -137310254 + MER5C DNA MER1_type 218 282 -42 251 300 175 8 chr12 6478060 6478180 -137308275 - MIR3 SINE MIR -8 200 61 301 288 55 113 chr12 6479242 6479516 -137306939 + L2 LINE L2 3042 3299 -14 2335 87 14 3 chr12 6480267 6480556 -137305899 + AluSx SINE Alu 1 292 -20 1595 293 101 20 chr12 6481159 6481964 -137304491 + L2 LINE L2 1765 2634 -680 254 340 141 14 chr12 6482013 6482483 -137303972 - L1ME3A LINE L1 -233 5929 5397 2265 109 0 0 chr12 6482489 6482792 -137303663 - AluSc SINE Alu -6 303 1 2374 98 0 0 chr12 6482794 6483089 -137303366 - AluSx SINE Alu -17 295 1 285 244 122 41 chr12 6483918 6484041 -137302414 + MIR SINE MIR 50 182 -80 316 342 153 30 chr12 6484141 6484816 -137301639 + L2 LINE L2 2004 2761 -553 2350 81 17 0 chr12 6485004 6485299 -137301156 + AluSq SINE Alu 1 300 -13 720 243 47 27 chr12 6485300 6485596 -137300859 + L1MC5 LINE L1 7616 7917 -44 2287 82 58 0 chr12 6485606 6485900 -137300555 - AluY SINE Alu 0 311 1 255 330 139 9 chr12 6485920 6485956 -137300499 + L2 LINE L2 3140 3170 -102 1532 188 11 18 chr12 6485956 6486238 -137300217 - AluJo SINE Alu -32 280 1 255 330 139 9 chr12 6486238 6486316 -137300139 + L2 LINE L2 3170 3269 -3 519 311 60 0 chr12 6486688 6486839 -137299616 + MIR3 SINE MIR 35 194 -14 586 148 20 0 chr12 6487206 6487307 -137299148 - L1MD1 LINE L1 0 6242 6140 275 318 19 28 chr12 6487659 6487766 -137298689 - MIR SINE MIR -152 110 5 524 224 239 40 chr12 6487919 6488120 -137298335 + MIR SINE MIR 3 243 -19 274 376 55 0 chr12 6488872 6488981 -137297474 - L2 LINE L2 -9 3263 3149 287 261 133 33 chr12 6489327 6489507 -137296948 - L3b LINE CR1 -100 1483 1286 260 276 0 120 chr12 6489664 6489821 -137296634 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6490088 6490129 -137296326 + (CA)n Simple_repeat Simple_repeat 2 42 0 856 153 0 0 chr12 6490129 6490247 -137296208 - FRAM SINE Alu -36 140 23 186 305 34 0 chr12 6490393 6490452 -137296003 + L2 LINE L2 3004 3064 -208 1261 154 45 12 chr12 6491642 6491811 -137294644 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6491811 6491858 -137294597 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1261 154 45 12 chr12 6491858 6491934 -137294521 - AluJo SINE Alu -193 119 47 383 219 142 52 chr12 6492613 6492768 -137293687 - MIR3 SINE MIR -31 177 9 180 283 0 0 chr12 6493238 6493291 -137293164 - MIR SINE MIR -127 81 29 900 231 52 45 chr12 6493506 6493753 -137292702 + L2 LINE L2 3022 3273 -40 2075 149 70 6 chr12 6493753 6494096 -137292359 - MLT1A1 LTR MaLR 0 365 1 900 231 52 45 chr12 6494096 6494138 -137292317 + L2 LINE L2 3273 3313 0 2197 121 0 0 chr12 6495249 6495556 -137290899 + AluSx SINE Alu 1 307 -5 392 313 45 39 chr12 6495601 6495780 -137290675 + MIR3 SINE MIR 20 199 -9 2685 182 27 16 chr12 6496018 6496534 -137289921 + Charlie1b DNA MER1_type 1 522 -1 238 282 0 42 chr12 6496681 6496752 -137289703 + MIR SINE MIR 109 176 -86 227 33 0 0 chr12 6498861 6498891 -137287564 - MER91B DNA MER1_type -126 64 35 301 263 237 13 chr12 6499771 6499927 -137286528 - MIR3 SINE MIR -3 205 15 2306 82 0 7 chr12 6502181 6502486 -137283969 + AluSx SINE Alu 1 303 -9 1741 133 13 66 chr12 6502802 6503119 -137283336 - AluSx SINE Alu -12 300 1 1789 155 16 10 chr12 6503131 6503163 -137283292 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6503163 6503209 -137283246 + (TG)n Simple_repeat Simple_repeat 1 46 0 1789 155 16 10 chr12 6503209 6503485 -137282970 - AluJb SINE Alu -30 282 2 508 247 126 37 chr12 6503488 6503678 -137282777 - MIR SINE MIR -38 224 18 619 256 150 6 chr12 6504783 6504963 -137281492 + MIR SINE MIR 35 240 -22 2197 108 0 0 chr12 6507201 6507497 -137278958 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6508818 6508841 -137277614 + (A)n Simple_repeat Simple_repeat 1 23 0 278 239 86 69 chr12 6510326 6510452 -137276003 - MER5B DNA MER1_type -40 138 18 532 239 52 7 chr12 6510653 6510808 -137275647 + MER104 DNA Tc2 1 162 -18 1854 131 0 18 chr12 6511372 6511654 -137274801 + AluSx SINE Alu 15 291 -21 269 258 0 15 chr12 6511844 6511910 -137274545 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6512371 6512398 -137274057 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2321 70 0 13 chr12 6513655 6513956 -137272499 + AluY SINE Alu 1 297 -14 2247 98 0 0 chr12 6514950 6515245 -137271210 + AluSx SINE Alu 1 295 -17 2151 109 0 0 chr12 6515247 6515550 -137270905 + AluSc SINE Alu 1 303 -6 377 366 143 8 chr12 6515556 6516026 -137270429 + L1ME3 LINE L1 5397 5929 -233 1520 297 99 19 chr12 6516075 6516880 -137269575 - L2 LINE L2 -680 2634 1765 2202 89 14 3 chr12 6517481 6517772 -137268683 - AluSx SINE Alu -18 294 1 307 297 65 91 chr12 6518523 6518755 -137267700 - L2 LINE L2 -14 3299 3074 241 300 175 8 chr12 6519859 6519979 -137266476 + MIR3 SINE MIR 61 200 -8 457 194 80 209 chr12 6521838 6521966 -137264489 - MER5C DNA MER1_type -41 283 140 2364 55 3 0 chr12 6521966 6522257 -137264198 + AluY SINE Alu 1 292 -19 2130 114 0 16 chr12 6522257 6522565 -137263890 - AluSx SINE Alu -9 303 1 457 194 80 209 chr12 6522565 6522760 -137263695 - MER5C DNA MER1_type -182 142 1 320 292 57 16 chr12 6523037 6523172 -137263283 + MIR SINE MIR 3 141 -67 248 253 58 35 chr12 6523359 6523446 -137263009 + MIR3 SINE MIR 105 193 -15 217 292 130 25 chr12 6523579 6523740 -137262715 - MIR3 SINE MIR -7 201 24 775 258 181 25 chr12 6526432 6526952 -137259503 - L1ME4a LINE L1 -2 6119 5519 239 221 19 19 chr12 6527409 6527492 -137258963 + MIR SINE MIR 69 150 -60 1638 100 6 108 chr12 6527534 6527922 -137258533 - Tigger4(Zombi) DNA MER2_type 0 2731 1 526 275 48 16 chr12 6529289 6529478 -137256977 - MER91A DNA MER1_type -1 195 1 293 182 18 0 chr12 6530623 6530678 -137255777 + (TATG)n Simple_repeat Simple_repeat 1 56 0 615 231 0 0 chr12 6530682 6530989 -137255466 + (TG)n Simple_repeat Simple_repeat 1 307 0 218 271 102 0 chr12 6530989 6531048 -137255407 - MIR SINE MIR -147 115 51 2442 59 3 0 chr12 6531048 6531355 -137255100 - AluY SINE Alu -3 308 1 903 61 0 0 chr12 6531357 6531472 -137254983 - AluSc SINE Alu -1 308 194 1981 128 0 10 chr12 6532671 6532967 -137253488 - AluSx SINE Alu -19 293 1 403 308 77 18 chr12 6533027 6533196 -137253259 - MER5A DNA MER1_type -1 188 10 6369 70 10 6 chr12 6534435 6535329 -137251126 - L1P LINE L1 -3638 2508 1611 366 200 62 0 chr12 6535733 6535813 -137250642 - L2 LINE L2 0 3313 3229 339 25 0 0 chr12 6535829 6535869 -137250586 + (TG)n Simple_repeat Simple_repeat 2 41 0 1491 183 83 40 chr12 6535875 6536247 -137250208 - MLT1D LTR MaLR 0 505 118 445 273 67 16 chr12 6536295 6536607 -137249848 - L2 LINE L2 -231 3082 2758 241 310 95 57 chr12 6536621 6536779 -137249676 - L3 LINE CR1 -224 1353 1190 1555 159 19 0 chr12 6536800 6537057 -137249398 - L1MA5 LINE L1 -2 6298 6037 219 293 151 0 chr12 6537362 6537468 -137248987 + MIR SINE MIR 31 152 -110 2195 117 3 0 chr12 6538663 6538971 -137247484 - AluSx SINE Alu -3 309 1 918 150 0 0 chr12 6540491 6540624 -137245831 + FLAM_C SINE Alu 1 133 -10 481 200 9 9 chr12 6541258 6541368 -137245087 + MER3 DNA MER1_type 100 209 0 219 148 0 49 chr12 6541927 6541988 -137244467 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 259 254 16 0 chr12 6543243 6543306 -137243149 + L2 LINE L2 3209 3272 0 182 224 0 20 chr12 6545017 6545066 -137241389 + L2 LINE L2 2800 2847 -467 202 256 110 12 chr12 6545430 6545512 -137240943 + MIR SINE MIR 46 135 -73 487 239 32 134 chr12 6545842 6546089 -137240366 + MIR SINE MIR 27 248 -14 447 253 96 7 chr12 6547210 6547356 -137239099 + MIR3 SINE MIR 27 185 -23 186 43 0 0 chr12 6548399 6548422 -137238033 + (TATTG)n Simple_repeat Simple_repeat 2 24 0 240 376 120 0 chr12 6548427 6548552 -137237903 + L2 LINE L2 3133 3272 0 242 254 34 0 chr12 6548816 6548875 -137237580 + MIR SINE MIR 85 145 -63 1833 270 144 11 chr12 6548885 6549929 -137236526 + L2 LINE L2 2128 3308 -5 2615 57 0 0 chr12 6550712 6551009 -137235446 + AluY SINE Alu 1 297 -14 180 0 0 0 chr12 6551010 6551030 -137235425 + (CA)n Simple_repeat Simple_repeat 2 21 0 1684 220 58 76 chr12 6552979 6553569 -137232886 - L1MC4a LINE L1 -1920 5888 5310 4986 160 19 17 chr12 6553574 6554248 -137232207 - L1MB1 LINE L1 -6 6162 5477 360 0 0 0 chr12 6554248 6554288 -137232167 + (TG)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6554288 6554837 -137231618 - L1MB1 LINE L1 -691 5477 4931 456 132 53 99 chr12 6554819 6554971 -137231484 - L1MB1 LINE L1 -1781 4365 4221 * 225 291 46 80 chr12 6555775 6555799 -137230656 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6555799 6556050 -137230405 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6556050 6556176 -137230279 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6556599 6556906 -137229549 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6557455 6557618 -137228837 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6557786 6558085 -137228370 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6558426 6558529 -137227926 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6558529 6558825 -137227630 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6558826 6558904 -137227551 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6559797 6559871 -137226584 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6559871 6560181 -137226274 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6560181 6560531 -137225924 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6560908 6561088 -137225367 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6561869 6562007 -137224448 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6563523 6563564 -137222891 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6563936 6564244 -137222211 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6564280 6564647 -137221808 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6564715 6565021 -137221434 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6565047 6565198 -137221257 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6565207 6565334 -137221121 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6565366 6565616 -137220839 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6565645 6565948 -137220507 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6566016 6566074 -137220381 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6566074 6566383 -137220072 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6566383 6566425 -137220030 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6566474 6566794 -137219661 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6566923 6566944 -137219511 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6567022 6567328 -137219127 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6567749 6568066 -137218389 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6568216 6568266 -137218189 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6568266 6568471 -137217984 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6568471 6568485 -137217970 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6568485 6568794 -137217661 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6568794 6568960 -137217495 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6569072 6569096 -137217359 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6569096 6569395 -137217060 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6569395 6569635 -137216820 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6569636 6569785 -137216670 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6569808 6570098 -137216357 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6570099 6570399 -137216056 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6570493 6570653 -137215802 + AluSq SINE Alu 1 166 -147 8030 124 127 32 chr12 6570653 6572202 -137214253 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6572207 6572348 -137214107 + AluSq SINE Alu 165 300 -13 550 281 93 24 chr12 6572351 6572852 -137213603 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6572890 6573188 -137213267 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6573343 6573456 -137212999 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6573488 6573662 -137212793 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6573727 6574011 -137212444 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6574012 6574180 -137212275 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6574304 6574617 -137211838 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6575213 6575271 -137211184 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6575291 6575603 -137210852 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6575603 6575907 -137210548 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6575909 6576218 -137210237 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6576218 6576358 -137210097 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6576363 6576532 -137209923 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6576637 6576937 -137209518 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6576949 6577079 -137209376 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6577405 6577489 -137208966 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6577489 6577794 -137208661 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6577794 6577987 -137208468 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6578419 6578877 -137207578 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6579680 6579825 -137206630 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6579827 6579994 -137206461 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6579994 6580232 -137206223 - MER66B LTR ERV1 -7 479 235 3668 165 116 30 chr12 6580233 6581618 -137204837 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6581623 6581770 -137204685 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6581770 6582047 -137204408 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6582047 6582138 -137204317 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6582145 6582204 -137204251 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6582210 6582515 -137203940 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6582530 6582607 -137203848 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6582608 6582880 -137203575 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6582917 6583230 -137203225 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6583500 6583798 -137202657 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6583921 6584089 -137202366 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6584090 6584375 -137202080 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6584469 6584588 -137201867 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6584958 6585247 -137201208 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6585690 6586005 -137200450 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6586081 6586171 -137200284 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6586574 6586642 -137199813 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6586654 6586940 -137199515 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6587127 6587164 -137199291 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6587220 6587339 -137199116 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6587494 6587699 -137198756 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6587700 6587755 -137198700 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6587755 6588058 -137198397 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6588059 6588240 -137198215 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6588240 6588318 -137198137 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6588330 6588638 -137197817 - AluY SINE Alu -3 308 1 1590 164 23 26 chr12 6588675 6588985 -137197470 + LOR1b LTR ERV1 70 378 -83 2034 125 7 0 chr12 6588985 6589272 -137197183 + AluSx SINE Alu 1 289 -23 672 294 33 82 chr12 6589474 6589926 -137196529 - L2 LINE L2 -32 3240 2811 3086 129 66 15 chr12 6590077 6590276 -137196179 + MER41C LTR ERV1 1 188 -366 2325 104 3 0 chr12 6590276 6590573 -137195882 - AluSg SINE Alu -12 298 1 3086 129 66 15 chr12 6590573 6590900 -137195555 + MER41C LTR ERV1 188 554 0 189 295 53 11 chr12 6590985 6591080 -137195375 - MIR3 SINE MIR -102 106 8 2354 102 3 0 chr12 6591895 6592200 -137194255 + AluSx SINE Alu 1 306 -6 2532 68 0 10 chr12 6592320 6592629 -137193826 - AluY SINE Alu -5 306 1 433 272 76 48 chr12 6592712 6592962 -137193493 + Charlie8 DNA MER1_type 215 471 -1946 685 243 88 23 chr12 6592974 6593348 -137193107 - MLT1F LTR MaLR -106 436 1 691 285 50 68 chr12 6593409 6593827 -137192628 + L1M4 LINE L1 2320 2744 -3402 2326 62 0 4 chr12 6593827 6594102 -137192353 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6594106 6594146 -137192309 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 691 285 50 68 chr12 6594146 6594340 -137192115 + L1M4 LINE L1 2747 2926 -3220 2558 59 0 0 chr12 6594471 6594760 -137191695 - AluY SINE Alu -20 291 3 2055 139 3 0 chr12 6594966 6595268 -137191187 - AluSg SINE Alu -7 303 1 598 271 65 13 chr12 6595404 6595559 -137190896 - MLT1J LTR MaLR -348 163 1 1705 287 80 33 chr12 6595590 6596121 -137190334 + L1M4 LINE L1 3644 4149 -1997 2279 60 57 7 chr12 6596121 6596402 -137190053 + AluY SINE Alu 1 295 -16 1705 287 80 33 chr12 6596402 6597086 -137189369 + L1M4 LINE L1 4149 4916 -1230 2252 90 4 0 chr12 6597378 6597656 -137188799 - AluSq SINE Alu -10 303 25 304 331 44 44 chr12 6597704 6597885 -137188570 + L1ME3A LINE L1 5963 6143 -27 2483 67 0 7 chr12 6598455 6598755 -137187700 + AluSc SINE Alu 1 298 -11 2339 79 10 10 chr12 6599139 6599444 -137187011 - AluSq SINE Alu -8 305 1 1676 171 7 7 chr12 6599740 6600021 -137186434 - AluJb SINE Alu -30 282 2 457 332 46 37 chr12 6600039 6600280 -137186175 + L1ME4a LINE L1 5775 6017 -104 359 266 141 8 chr12 6600283 6600411 -137186044 - MER5A DNA MER1_type -3 186 42 1722 212 37 8 chr12 6600411 6600812 -137185643 - MER63B DNA MER1_type -23 413 1 1299 189 14 21 chr12 6600881 6601172 -137185283 - L1MA5 LINE L1 0 6300 6012 476 277 104 42 chr12 6602068 6602357 -137184098 - L2 LINE L2 -7 3306 3000 5798 141 240 20 chr12 6602357 6603738 -137182717 + pTR5 LTR ERV1 753 2438 0 1071 254 56 25 chr12 6603765 6604229 -137182226 - L2 LINE L2 -350 2964 2437 811 237 102 102 chr12 6604666 6605087 -137181368 - MLT1J LTR MaLR -60 451 28 1750 174 7 13 chr12 6605087 6605386 -137181069 + AluJb SINE Alu 1 297 -15 811 237 102 102 chr12 6605386 6605415 -137181040 - MLT1J LTR MaLR -482 29 1 889 66 22 22 chr12 6605499 6605635 -137180820 - MER85 DNA T2_type -3 136 1 416 317 84 6 chr12 6605693 6605860 -137180595 - MIR SINE MIR -67 195 16 2450 84 0 0 chr12 6606193 6606492 -137179963 - AluY SINE Alu -12 299 1 220 310 17 0 chr12 6606867 6606925 -137179530 - MIR3 SINE MIR -1 207 149 524 229 95 50 chr12 6607022 6607201 -137179254 + MIR SINE MIR 13 199 -63 824 153 24 0 chr12 6607201 6607325 -137179130 + FLAM_C SINE Alu 1 127 -16 34 0 0 0 chr12 6607325 6607359 -137179096 + AT_rich Low_complexity Low_complexity 1 34 0 1862 117 4 0 chr12 6607359 6607615 -137178840 + AluY SINE Alu 37 293 -18 2339 92 7 3 chr12 6607617 6607923 -137178532 + AluSc SINE Alu 1 307 -2 1645 109 143 4 chr12 6607962 6608259 -137178196 - AluSq SINE Alu 0 334 1 3112 204 21 20 chr12 6608263 6608863 -137177592 + MER82 DNA MER2_type 1 604 -49 2475 81 0 7 chr12 6608863 6609173 -137177282 - AluY SINE Alu -3 308 1 3112 204 21 20 chr12 6609173 6609224 -137177231 + MER82 DNA MER2_type 604 653 0 217 269 0 0 chr12 6609225 6609277 -137177178 + MIR SINE MIR 198 249 -13 413 288 61 8 chr12 6609289 6609421 -137177034 - MIR SINE MIR -76 186 48 2533 81 0 3 chr12 6609614 6609924 -137176531 + AluY SINE Alu 1 309 -2 491 241 118 15 chr12 6610468 6610663 -137175792 + MER58C DNA MER1_type 1 215 0 202 348 36 18 chr12 6610703 6610815 -137175640 + MIR SINE MIR 34 147 -61 184 261 130 78 chr12 6610989 6611104 -137175351 - MIR SINE MIR -114 148 28 2281 96 3 0 chr12 6611250 6611532 -137174923 - AluSq SINE Alu -30 283 1 2435 94 7 0 chr12 6612638 6612947 -137173508 - AluSx SINE Alu -1 311 1 2468 153 84 6 chr12 6612985 6613484 -137172971 + L1MC3 LINE L1 6137 6260 -84 383 180 100 31 chr12 6613480 6613505 -137172950 + L1MC3 LINE L1 7677 7699 -86 * 2277 104 7 10 chr12 6613505 6613812 -137172643 + AluSx SINE Alu 1 306 -6 383 180 100 31 chr12 6613812 6613918 -137172537 + L1MC3 LINE L1 7699 7785 0 230 196 11 120 chr12 6613992 6614024 -137172431 + MIR SINE MIR 2 36 -226 2662 40 0 3 chr12 6614024 6614324 -137172131 + AluY SINE Alu 1 299 -12 230 196 11 120 chr12 6614324 6614383 -137172072 + MIR SINE MIR 36 83 -179 360 316 9 9 chr12 6615162 6615276 -137171179 + MIR SINE MIR 24 137 -71 296 258 34 11 chr12 6615556 6615645 -137170810 - MIR SINE MIR -84 124 34 1908 110 69 39 chr12 6615968 6616332 -137170123 + THE1C LTR MaLR 1 375 0 467 220 0 23 chr12 6617308 6617440 -137169015 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6617517 6617556 -137168899 + AT_rich Low_complexity Low_complexity 1 39 0 1248 248 177 18 chr12 6617636 6617671 -137168784 + L1MC4a LINE L1 5258 5286 -2522 2225 128 3 0 chr12 6617671 6617968 -137168487 + AluSx SINE Alu 1 298 -14 1248 248 177 18 chr12 6617968 6618087 -137168368 + L1MC4a LINE L1 5286 5385 -2423 2211 100 0 32 chr12 6618087 6618397 -137168058 + AluY SINE Alu 1 300 -11 1248 248 177 18 chr12 6618397 6618847 -137167608 + L1MC4a LINE L1 5385 5959 -1849 2276 73 0 4 chr12 6618848 6619122 -137167333 + AluY SINE Alu 1 273 -38 379 75 0 0 chr12 6619122 6619175 -137167280 + Alu SINE Alu 242 294 -7 1792 164 13 41 chr12 6619393 6619534 -137166921 + AluJb SINE Alu 1 144 -168 2489 46 0 36 chr12 6619534 6619837 -137166618 + AluY SINE Alu 1 292 -19 1792 164 13 41 chr12 6619837 6620013 -137166442 + AluJb SINE Alu 144 309 -3 1083 76 15 0 chr12 6620607 6620738 -137165717 - AluSq/x SINE Alu -179 133 1 329 305 178 9 chr12 6620950 6621163 -137165292 - LTR33 LTR ERVL -115 406 158 404 299 57 86 chr12 6621421 6621806 -137164649 + L2 LINE L2 2899 3272 0 934 212 92 39 chr12 6622574 6622857 -137163598 - MLT1C LTR MaLR 0 467 170 1038 194 70 0 chr12 6622860 6623102 -137163353 - L1MB3 LINE L1 -65 6118 5860 817 209 5 31 chr12 6623110 6623301 -137163154 - MLT1C LTR MaLR -273 194 9 378 323 99 10 chr12 6623737 6624130 -137162325 - L2 LINE L2 -6 3307 2880 751 170 0 9 chr12 6624133 6624600 -137161855 + (TG)n Simple_repeat Simple_repeat 1 462 0 2332 104 7 0 chr12 6625879 6626188 -137160267 + AluSq SINE Alu 1 311 -2 398 265 197 0 chr12 6626266 6626413 -137160042 + L3 LINE CR1 1263 1438 -139 890 237 47 5 chr12 6626884 6627099 -137159356 - MIR SINE MIR -14 248 25 2032 184 78 23 chr12 6627172 6627644 -137158811 - MLT1D LTR MaLR -7 498 1 1507 130 113 45 chr12 6627662 6627954 -137158501 + AluSx SINE Alu 1 312 0 1031 230 41 70 chr12 6628159 6628375 -137158080 - L1MC5 LINE L1 -55 7906 7706 2687 42 0 3 chr12 6628375 6628685 -137157770 + AluY SINE Alu 1 309 -2 1031 230 41 70 chr12 6628685 6628881 -137157574 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6628956 6628985 -137157470 + AT_rich Low_complexity Low_complexity 1 29 0 217 360 13 0 chr12 6629407 6629482 -137156973 + MIR SINE MIR 32 107 -101 1237 179 112 13 chr12 6629762 6629839 -137156616 + L1MD3 LINE L1 7653 7721 -274 2172 116 10 7 chr12 6629839 6630149 -137156306 + AluSx SINE Alu 1 311 -1 1237 179 112 13 chr12 6630149 6630383 -137156072 + L1MD3 LINE L1 7721 7995 0 450 149 0 0 chr12 6630392 6630459 -137155996 + AluSg/x SINE Alu 205 271 -29 348 149 11 35 chr12 6630462 6630549 -137155906 + GA-rich Low_complexity Low_complexity 3 87 0 2014 163 0 0 chr12 6630594 6630894 -137155561 + AluJb SINE Alu 1 300 -12 201 214 89 0 chr12 6631628 6631684 -137154771 + L2 LINE L2 3203 3263 -9 292 308 57 58 chr12 6631864 6632074 -137154381 - MIR SINE MIR -50 212 3 519 249 194 15 chr12 6632546 6632747 -137153708 + MIR SINE MIR 23 259 -3 952 160 0 0 chr12 6632822 6632966 -137153489 - AluSg/x SINE Alu -20 290 147 645 106 53 9 chr12 6632966 6633079 -137153376 - LTR5 LTR ERVK 0 969 852 4658 124 187 73 chr12 6633082 6634487 -137151968 - pTR5 LTR ERV1 0 2438 742 6396 62 82 1 chr12 6634487 6635277 -137151178 - LTR5 LTR ERVK -115 854 1 1209 102 13 0 chr12 6635300 6635457 -137150998 - AluSc SINE Alu -20 289 131 2629 53 0 0 chr12 6635458 6635759 -137150696 - AluY SINE Alu -10 301 1 481 193 119 51 chr12 6636134 6636310 -137150145 - L2 LINE L2 -1 3312 3125 1358 175 144 12 chr12 6637311 6637693 -137148762 - MLT1D LTR MaLR -8 497 15 1967 117 3 73 chr12 6637705 6637857 -137148598 + AluSx SINE Alu 1 121 -191 2378 88 0 0 chr12 6637857 6638142 -137148313 + AluSg SINE Alu 8 292 -18 1071 163 30 15 chr12 6638103 6638305 -137148150 + AluSg/x SINE Alu 88 292 -18 1967 117 3 73 chr12 6638142 6638305 -137148150 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6638451 6638705 -137147750 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6639177 6639223 -137147232 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6639223 6639739 -137146716 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6639739 6640039 -137146416 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6640039 6640056 -137146399 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6640056 6640355 -137146100 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6640355 6640496 -137145959 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6640496 6640615 -137145840 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6640715 6640822 -137145633 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6641111 6641369 -137145086 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6641649 6641812 -137144643 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6642173 6642296 -137144159 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6643282 6643366 -137143089 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6644807 6645109 -137141346 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6645824 6645972 -137140483 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6646183 6646309 -137140146 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6647086 6647266 -137139189 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6647334 6647453 -137139002 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6647668 6647774 -137138681 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6648648 6648684 -137137771 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1722 153 10 32 chr12 6649261 6649574 -137136881 - AluJb SINE Alu -6 306 1 1481 167 85 4 chr12 6649951 6650232 -137136223 - AluJo SINE Alu -8 304 1 2310 97 3 0 chr12 6650993 6651301 -137135154 + AluSp SINE Alu 1 309 -4 2080 97 28 0 chr12 6651609 6651897 -137134558 - AluSp SINE Alu 0 313 18 2114 99 31 0 chr12 6652018 6652310 -137134145 - AluSx SINE Alu -11 301 1 2328 100 0 0 chr12 6652726 6653035 -137133420 - AluSx SINE Alu -3 309 1 619 296 38 46 chr12 6653782 6653886 -137132569 + MIR SINE MIR 1 104 -158 2190 87 3 3 chr12 6653886 6654186 -137132269 - AluSg SINE Alu -10 300 1 619 296 38 46 chr12 6654186 6654321 -137132134 + MIR SINE MIR 104 238 -24 312 268 18 45 chr12 6655254 6655366 -137131089 + MIR3 SINE MIR 63 171 -37 377 326 21 0 chr12 6656055 6656199 -137130256 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6656208 6656242 -137130213 + (CTG)n Simple_repeat Simple_repeat 1 34 0 330 265 68 38 chr12 6657119 6657251 -137129204 + MIR SINE MIR 20 155 -107 1678 133 14 14 chr12 6657393 6657672 -137128783 - AluJb SINE Alu -4 308 30 592 217 97 23 chr12 6658413 6658588 -137127867 - MER5A DNA MER1_type -1 188 1 387 330 5 60 chr12 6659990 6660175 -137126280 - MIR SINE MIR -41 221 47 1700 157 7 30 chr12 6660291 6660590 -137125865 + AluJb SINE Alu 1 292 -20 1979 135 0 10 chr12 6660993 6661290 -137125165 + AluJb SINE Alu 1 294 -18 2318 94 0 0 chr12 6662048 6662356 -137124099 - AluSx SINE Alu -4 308 1 2397 77 0 0 chr12 6662525 6662835 -137123620 - AluY SINE Alu -1 310 1 1783 191 28 8 chr12 6663770 6664162 -137122293 - L1MD3 LINE L1 -8 7987 7588 1770 128 0 64 chr12 6664744 6665056 -137121399 + AluJo SINE Alu 1 292 -20 2413 60 0 0 chr12 6666312 6666611 -137119844 - AluY SINE Alu -12 299 1 438 245 63 14 chr12 6668100 6668243 -137118212 - L1ME3A LINE L1 -241 5929 5780 2277 93 3 0 chr12 6670236 6670548 -137115907 - AluSp SINE Alu 0 313 1 483 306 87 15 chr12 6670555 6670751 -137115704 - MIR SINE MIR -7 255 46 233 94 0 0 chr12 6671318 6671350 -137115105 - Alu SINE Alu -227 75 44 1923 103 0 25 chr12 6671350 6671632 -137114823 + AluSx SINE Alu 31 305 -7 198 226 19 0 chr12 6672391 6672444 -137114011 + MIR SINE MIR 78 131 -77 587 211 16 16 chr12 6674326 6674454 -137112001 - MIR SINE MIR -59 203 76 533 259 8 15 chr12 6674924 6675055 -137111400 - MIR SINE MIR -58 150 21 718 120 19 0 chr12 6677398 6677506 -137108949 - HY1 scRNA scRNA -2 110 1 326 257 154 22 chr12 6677758 6677894 -137108561 - MIR SINE MIR -26 236 83 261 364 148 0 chr12 6679369 6679578 -137106877 - MIR SINE MIR -11 251 12 2242 95 16 3 chr12 6680019 6680325 -137106130 - AluSq SINE Alu -3 310 1 408 155 95 0 chr12 6680366 6680450 -137106005 + AluSg/x SINE Alu 205 296 -13 221 21 42 42 chr12 6680933 6680981 -137105474 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2386 67 3 0 chr12 6681396 6681693 -137104762 - AluSp SINE Alu -15 298 1 264 362 17 17 chr12 6681734 6681850 -137104605 - MIR SINE MIR -62 146 31 241 171 162 124 chr12 6681892 6681997 -137104458 + L2 LINE L2 3205 3313 0 519 249 0 34 chr12 6682006 6682192 -137104263 - MLT2F LTR ERVL 0 663 436 1869 136 3 10 chr12 6682217 6682518 -137103937 - AluJb SINE Alu -13 299 1 733 176 11 13 chr12 6682541 6682724 -137103731 - MLT2F LTR ERVL -434 229 2 2124 161 67 38 chr12 6682958 6683384 -137103071 + L1MB4 LINE L1 5689 6132 -48 1627 191 20 0 chr12 6683384 6683678 -137102777 + AluJb SINE Alu 1 300 -12 2124 161 67 38 chr12 6683678 6683729 -137102726 + L1MB4 LINE L1 6132 6180 0 2119 111 3 0 chr12 6683840 6684146 -137102309 - AluSx SINE Alu -5 307 1 407 329 114 57 chr12 6685313 6685504 -137100951 + L3 LINE CR1 455 634 -943 2206 89 0 13 chr12 6685504 6685808 -137100647 + AluSx SINE Alu 1 300 -12 2082 108 7 3 chr12 6685810 6686107 -137100348 + AluSc SINE Alu 1 298 -11 407 329 114 57 chr12 6686107 6686262 -137100193 + L3 LINE CR1 634 824 -753 329 228 80 124 chr12 6686438 6686541 -137099914 - MLT1J LTR MaLR -174 337 231 2191 103 0 3 chr12 6686541 6686842 -137099613 + AluY SINE Alu 1 300 -11 329 228 80 124 chr12 6686842 6686988 -137099467 - MLT1J LTR MaLR -280 231 99 184 304 45 45 chr12 6687050 6687162 -137099293 - MIR SINE MIR -65 143 32 736 325 166 28 chr12 6687206 6687850 -137098605 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6688482 6688996 -137097459 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6689078 6689376 -137097079 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6689378 6689677 -137096778 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6690206 6690510 -137095945 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6690895 6690929 -137095526 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6690944 6691250 -137095205 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6691566 6691603 -137094852 + Alu SINE Alu 2 38 -263 2075 129 23 13 chr12 6691603 6691912 -137094543 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6692668 6692966 -137093489 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6694105 6694399 -137092056 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6694853 6695156 -137091299 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6695327 6695626 -137090829 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6695827 6696008 -137090447 + AluSg/x SINE Alu 128 308 -2 346 269 57 46 chr12 6696017 6696192 -137090263 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6696327 6696428 -137090027 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6696676 6696961 -137089494 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6697129 6697230 -137089225 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6697234 6697541 -137088914 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6697827 6697985 -137088470 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6698004 6698073 -137088382 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6698085 6698397 -137088058 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6698404 6698488 -137087967 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6698488 6698515 -137087940 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6698515 6698595 -137087860 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6698682 6698752 -137087703 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6698790 6698847 -137087608 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6698849 6699040 -137087415 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6699040 6699369 -137087086 + AluSq SINE Alu 1 329 0 418 224 39 83 chr12 6699376 6699401 -137087054 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6699401 6699704 -137086751 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6699704 6699834 -137086621 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6699835 6700147 -137086308 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6700184 6702547 -137083908 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6702547 6702847 -137083608 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6702847 6702897 -137083558 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6702901 6703000 -137083455 - L2 LINE L2 -363 2950 2850 2058 148 7 0 chr12 6703001 6703305 -137083150 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6703306 6703329 -137083126 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6703334 6703397 -137083058 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6703399 6703712 -137082743 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6703712 6704009 -137082446 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6704009 6704533 -137081922 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6704534 6704829 -137081626 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6704842 6704996 -137081459 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6706320 6706391 -137080064 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6706404 6706509 -137079946 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6706509 6706820 -137079635 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6706820 6707137 -137079318 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6707525 6707615 -137078840 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6707654 6707788 -137078667 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6708137 6708180 -137078275 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6708245 6708367 -137078088 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6708378 6708505 -137077950 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6708511 6708619 -137077836 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6708641 6708942 -137077513 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6708942 6708975 -137077480 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6708981 6709279 -137077176 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6709296 6709598 -137076857 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6710057 6710110 -137076345 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6710254 6710419 -137076036 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6710789 6711095 -137075360 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6711102 6711242 -137075213 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6711283 6711351 -137075104 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6712131 6712155 -137074300 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6712175 6712396 -137074059 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6712425 6712733 -137073722 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6712798 6712978 -137073477 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6713017 6713076 -137073379 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6713491 6713527 -137072928 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6713528 6713579 -137072876 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6713595 6713899 -137072556 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6713899 6714209 -137072246 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6714211 6714496 -137071959 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6714496 6714627 -137071828 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6714627 6714717 -137071738 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6714717 6715012 -137071443 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6715012 6715038 -137071417 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6715038 6715353 -137071102 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6715353 6715600 -137070855 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6715747 6715848 -137070607 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6716115 6716290 -137070165 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6716290 6716325 -137070130 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6716325 6716441 -137070014 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6716468 6716953 -137069502 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6718389 6718531 -137067924 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6718592 6718905 -137067550 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6719459 6719589 -137066866 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6719743 6720039 -137066416 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6720321 6720538 -137065917 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6720552 6720613 -137065842 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6720699 6720806 -137065649 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6720818 6721156 -137065299 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6721169 6721226 -137065229 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6721800 6721829 -137064626 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6722086 6722383 -137064072 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6723108 6723207 -137063248 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6723414 6723492 -137062963 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6723665 6723699 -137062756 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6723676 6724762 -137061693 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6724762 6725065 -137061390 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6725065 6725621 -137060834 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6725794 6725830 -137060625 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6725830 6725921 -137060534 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6725921 6726208 -137060247 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6726213 6726245 -137060210 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6726245 6726613 -137059842 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6726613 6726914 -137059541 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6726914 6726964 -137059491 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6727002 6727116 -137059339 - AluSx SINE Alu -11 299 179 843 85 9 0 chr12 6727116 6727222 -137059233 - AluSx SINE Alu -206 107 1 228 333 31 0 chr12 6727223 6727319 -137059136 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6727541 6727664 -137058791 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6727697 6727858 -137058597 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6728671 6728973 -137057482 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6729693 6729987 -137056468 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6730263 6730572 -137055883 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6730586 6730859 -137055596 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6730859 6731124 -137055331 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6731135 6731274 -137055181 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6731275 6731569 -137054886 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6731569 6731886 -137054569 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6731886 6732104 -137054351 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6732104 6732226 -137054229 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6732226 6732252 -137054203 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6732252 6732423 -137054032 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6732423 6732645 -137053810 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6732652 6732856 -137053599 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6732859 6733100 -137053355 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6734695 6735079 -137051376 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6735079 6735390 -137051065 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6735390 6735681 -137050774 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6735944 6736022 -137050433 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6736333 6736485 -137049970 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6736496 6736785 -137049670 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6736913 6737212 -137049243 + AluSx SINE Alu 1 301 -11 1000 151 25 0 chr12 6737063 6737222 -137049233 + AluSg/x SINE Alu 147 309 -1 705 106 0 0 chr12 6737233 6737337 -137049118 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6737380 6737421 -137049034 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 797 148 7 22 chr12 6737431 6737566 -137048889 + FLAM_C SINE Alu 1 133 0 282 287 107 24 chr12 6737578 6737761 -137048694 + MIR SINE MIR 19 212 -50 244 314 48 37 chr12 6738585 6738773 -137047682 + L2 LINE L2 2864 3053 -219 230 287 149 17 chr12 6738776 6738805 -137047650 - MLT1J LTR MaLR -24 487 463 2070 108 0 0 chr12 6738805 6739082 -137047373 + AluSx SINE Alu 1 277 -35 230 287 149 17 chr12 6739082 6739226 -137047229 - MLT1J LTR MaLR -48 463 291 1014 209 49 85 chr12 6739380 6739622 -137046833 + MER97a DNA MER1_type? 12 261 -633 2235 95 0 0 chr12 6739622 6739929 -137046526 + AluSx SINE Alu 1 307 0 1014 209 49 85 chr12 6739929 6739983 -137046472 + MER97a DNA MER1_type? 261 315 -579 2501 46 13 0 chr12 6739983 6740289 -137046166 + AluY SINE Alu 1 310 -1 1014 209 49 85 chr12 6740289 6740378 -137046077 + MER97a DNA MER1_type? 315 385 -509 2503 180 8 95 chr12 6740414 6740485 -137045970 + MER41D LTR ERV1 1 77 -480 813 153 15 0 chr12 6740485 6740616 -137045839 - FLAM_C SINE Alu 0 133 1 2503 180 8 95 chr12 6740616 6741154 -137045301 + MER41D LTR ERV1 77 557 0 482 199 67 107 chr12 6741163 6741303 -137045152 + MER97c DNA MER1_type? 468 612 -441 1628 118 0 0 chr12 6741303 6741531 -137044924 + AluSx SINE Alu 1 228 -84 482 199 67 107 chr12 6741531 6741682 -137044773 + MER97c DNA MER1_type? 612 1024 -29 372 181 14 0 chr12 6741682 6741754 -137044701 + AluS SINE Alu 1 73 -230 2159 70 46 0 chr12 6741930 6742215 -137044240 + L1PB1 LINE L1 5851 6148 -3 425 267 222 22 chr12 6742233 6742593 -137043862 + Charlie2b DNA MER1_type 312 743 -2039 971 229 84 74 chr12 6742647 6742683 -137043772 + Charlie2b DNA MER1_type 833 867 -1915 2129 98 3 7 chr12 6742683 6742979 -137043476 + AluSg SINE Alu 1 295 -15 971 229 84 74 chr12 6742979 6743144 -137043311 + Charlie2b DNA MER1_type 867 1029 -1753 1906 122 17 7 chr12 6743144 6743440 -137043015 - AluJb SINE Alu -8 304 6 971 229 84 74 chr12 6743440 6743643 -137042812 + Charlie2b DNA MER1_type 1029 1242 -1540 687 241 89 21 chr12 6743732 6743923 -137042532 - MIR SINE MIR -25 237 34 1414 153 0 5 chr12 6744069 6744284 -137042171 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6744285 6744306 -137042149 + (TA)n Simple_repeat Simple_repeat 1 21 0 273 282 89 0 chr12 6744343 6744467 -137041988 + L1MC4 LINE L1 7908 8042 0 2033 117 3 3 chr12 6744633 6744923 -137041532 - AluSx SINE Alu -13 299 10 705 251 16 16 chr12 6745134 6745325 -137041130 - LTR16A LTR ERVL -174 276 86 300 161 0 161 chr12 6745340 6745382 -137041073 - MIR SINE MIR -115 147 126 2046 151 0 0 chr12 6745382 6745694 -137040761 + AluSx SINE Alu 1 312 0 300 161 0 161 chr12 6745694 6745744 -137040711 - MIR SINE MIR -136 126 70 858 261 129 21 chr12 6745769 6746156 -137040299 - MLT1H LTR MaLR -13 536 33 2231 102 0 13 chr12 6746668 6746983 -137039472 - AluY SINE Alu 0 311 1 705 287 61 4 chr12 6747594 6747824 -137038631 + MIR SINE MIR 5 247 -15 1713 156 7 7 chr12 6747833 6748121 -137038334 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6748121 6748143 -137038312 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2316 87 0 10 chr12 6748457 6748768 -137037687 + AluSc SINE Alu 1 308 -1 296 292 21 0 chr12 6748800 6748896 -137037559 + L2 LINE L2 2962 3059 -213 1011 157 0 0 chr12 6749015 6749174 -137037281 + AluJb SINE Alu 140 298 -14 320 267 103 0 chr12 6749415 6749531 -137036924 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6749963 6750115 -137036340 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6750313 6750626 -137035829 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6751828 6751884 -137034571 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6752553 6752631 -137033824 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6752636 6752673 -137033782 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6752731 6753041 -137033414 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6753436 6753465 -137032990 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6753918 6753954 -137032501 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6754557 6754758 -137031697 - MER58 DNA MER1_type -2186 234 35 2309 88 0 13 chr12 6757271 6757578 -137028877 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6757940 6757985 -137028470 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6758304 6758515 -137027940 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6762224 6762517 -137023938 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6762761 6763317 -137023138 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6763367 6763813 -137022642 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6764069 6764366 -137022089 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6764607 6764898 -137021557 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6764946 6765086 -137021369 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6765647 6765954 -137020501 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6767282 6767364 -137019091 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6768217 6768243 -137018212 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6768310 6768496 -137017959 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6768928 6769075 -137017380 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6769075 6769383 -137017072 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6769383 6769455 -137017000 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6770045 6770258 -137016197 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6771423 6771681 -137014774 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6771986 6772021 -137014434 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6772377 6772406 -137014049 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6772993 6773089 -137013366 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6773813 6773848 -137012607 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6774181 6774373 -137012082 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6774393 6774497 -137011958 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6774776 6775080 -137011375 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6775101 6775209 -137011246 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6775209 6775518 -137010937 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6775518 6775618 -137010837 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6775691 6775855 -137010600 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6777470 6777561 -137008894 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6777561 6777837 -137008618 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6777837 6777929 -137008526 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6777994 6778106 -137008349 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6779021 6779108 -137007347 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6781630 6781976 -137004479 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6782380 6782650 -137003805 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6782776 6782841 -137003614 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6782867 6782893 -137003562 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6782892 6782927 -137003528 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6783201 6783301 -137003154 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6783305 6783476 -137002979 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6785350 6785595 -137000860 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6785799 6785934 -137000521 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6786092 6786391 -137000064 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6786393 6786527 -136999928 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6787092 6787227 -136999228 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6787228 6787391 -136999064 - AluJo SINE Alu -20 292 124 2222 83 3 0 chr12 6787471 6787761 -136998694 + AluSg SINE Alu 1 291 -19 2146 100 10 0 chr12 6787778 6788069 -136998386 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6788486 6788506 -136997949 + (CA)n Simple_repeat Simple_repeat 1 20 0 208 250 0 60 chr12 6788507 6788591 -136997864 + MIR3 SINE MIR 12 90 -118 487 316 26 94 chr12 6789892 6790275 -136996180 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6790981 6791118 -136995337 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6792640 6792786 -136993669 + FRAM SINE Alu 1 30 -146 2285 72 0 0 chr12 6792786 6793076 -136993379 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6793076 6793087 -136993368 + FRAM SINE Alu 30 40 0 3328 161 21 81 chr12 6793087 6793201 -136993254 + L1MB8 LINE L1 5288 5407 -771 2638 26 0 7 chr12 6793201 6793510 -136992945 + AluY SINE Alu 1 307 -4 3328 161 21 81 chr12 6793510 6793605 -136992850 + L1MB8 LINE L1 5407 5506 -672 2046 124 3 10 chr12 6793605 6793949 -136992506 + AluSx SINE Alu 1 312 0 3328 161 21 81 chr12 6793949 6794392 -136992063 + L1MB8 LINE L1 5506 5974 -204 2098 107 7 16 chr12 6794392 6794700 -136991755 + AluSx SINE Alu 1 305 -7 3328 161 21 81 chr12 6794700 6794809 -136991646 + L1MB8 LINE L1 5974 5980 -198 1782 158 31 0 chr12 6794809 6795101 -136991354 - AluJb SINE Alu -11 301 1 3328 161 21 81 chr12 6795101 6795289 -136991166 + L1MB8 LINE L1 5980 6178 0 363 342 33 0 chr12 6795658 6795778 -136990677 + MIR3 SINE MIR 82 205 -3 398 235 68 43 chr12 6796248 6796410 -136990045 - Charlie7 DNA MER1_type -7 2605 2440 2393 62 7 0 chr12 6796630 6796939 -136989516 - AluY SINE Alu 0 311 1 2020 82 0 4 chr12 6797039 6797308 -136989147 + AluY SINE Alu 41 308 -3 528 269 69 0 chr12 6799059 6799219 -136987236 - MIR SINE MIR -14 248 78 222 316 30 98 chr12 6799354 6799487 -136986968 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6799488 6799523 -136986932 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 192 245 53 10 chr12 6799949 6800052 -136986403 + MIR3 SINE MIR 78 164 -44 1832 114 70 0 chr12 6800346 6800617 -136985838 + AluSq SINE Alu 5 294 -19 781 203 89 72 chr12 6800734 6800766 -136985689 + MIR SINE MIR 2 32 -230 2144 107 3 3 chr12 6800766 6801066 -136985389 + AluSq SINE Alu 1 300 -13 781 203 89 72 chr12 6801066 6801269 -136985186 + MIR SINE MIR 32 241 -21 4039 149 25 26 chr12 6801297 6801627 -136984828 + L1MB7 LINE L1 5454 5783 -401 2039 129 0 3 chr12 6801627 6801930 -136984525 + AluJo SINE Alu 1 302 -10 4039 149 25 26 chr12 6801930 6802331 -136984124 + L1MB7 LINE L1 5783 6184 0 2243 135 95 32 chr12 6802452 6802811 -136983644 + MSTB LTR MaLR 2 390 -36 2304 104 0 0 chr12 6802811 6803119 -136983336 - AluSx SINE Alu -2 310 3 2243 135 95 32 chr12 6803119 6803159 -136983296 + MSTB LTR MaLR 390 426 0 388 286 21 36 chr12 6804108 6804248 -136982207 + L2 LINE L2 3176 3313 0 351 360 36 7 chr12 6804272 6804411 -136982044 - MIR3 SINE MIR -65 143 1 2134 91 10 19 chr12 6804508 6804817 -136981638 + AluSp SINE Alu 1 306 -7 219 225 338 0 chr12 6805582 6805662 -136980793 - MIR SINE MIR -59 149 43 1784 146 10 20 chr12 6805731 6806033 -136980422 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6806186 6806212 -136980243 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6806435 6806489 -136979966 + GC_rich Low_complexity Low_complexity 1 54 0 191 298 35 0 chr12 6807279 6807336 -136979119 - MER5B DNA MER1_type -68 110 52 1520 247 78 38 chr12 6807444 6807524 -136978931 + L1M4 LINE L1 4252 4327 -1819 2374 53 0 23 chr12 6807524 6807827 -136978628 + AluY SINE Alu 1 296 -15 1520 247 78 38 chr12 6807827 6808077 -136978378 + L1M4 LINE L1 4327 4566 -1580 1787 129 24 14 chr12 6808077 6808371 -136978084 - AluJb SINE Alu -15 297 1 1520 247 78 38 chr12 6808371 6808849 -136977606 + L1M4 LINE L1 4566 5093 -1053 2175 60 28 0 chr12 6808920 6809204 -136977251 - AluY SINE Alu -19 292 1 1146 162 56 49 chr12 6809223 6809489 -136976966 + L1M4 LINE L1 5514 5781 -403 347 244 0 26 chr12 6809532 6809569 -136976886 + L1ME3 LINE L1 5648 5684 -487 2329 82 3 0 chr12 6809569 6809873 -136976582 + AluSp SINE Alu 1 305 -8 347 244 0 26 chr12 6809873 6809949 -136976506 + L1ME3 LINE L1 5684 5758 -413 1910 158 3 0 chr12 6810008 6810305 -136976150 + AluJb SINE Alu 2 299 -13 269 170 0 0 chr12 6810309 6810356 -136976099 - MIR SINE MIR 0 262 216 546 141 10 10 chr12 6810381 6810480 -136975975 - MER57A LTR ERV1 0 403 305 736 210 204 41 chr12 6810482 6810796 -136975659 + L1ME3 LINE L1 5798 6162 0 380 264 36 9 chr12 6810796 6810906 -136975549 - MER5B DNA MER1_type -49 129 17 418 214 74 107 chr12 6811113 6811181 -136975274 - MIR SINE MIR -4 258 189 2215 181 2 19 chr12 6811181 6811591 -136974864 - MER57A LTR ERV1 0 403 1 418 214 74 107 chr12 6811591 6811737 -136974718 - MIR SINE MIR -73 189 51 484 240 23 57 chr12 6811829 6811996 -136974459 + MIR SINE MIR 33 199 -48 184 255 0 20 chr12 6812041 6812092 -136974363 - MIR SINE MIR -77 131 82 245 266 49 0 chr12 6812288 6812431 -136974024 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2382 66 0 7 chr12 6812601 6812906 -136973549 + AluY SINE Alu 1 303 -8 599 275 41 0 chr12 6813189 6813360 -136973095 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6814583 6814637 -136971818 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6814643 6814786 -136971669 + MIR SINE MIR 53 196 -66 1623 108 21 4 chr12 6814847 6815088 -136971367 - AluSx SINE Alu -7 305 61 413 107 0 0 chr12 6815137 6815193 -136971262 - AluSx SINE Alu -256 57 2 28 0 0 0 chr12 6815195 6815223 -136971232 + AT_rich Low_complexity Low_complexity 1 28 0 389 313 33 13 chr12 6815224 6815374 -136971081 + MIR SINE MIR 82 234 -28 451 216 120 0 chr12 6815956 6816081 -136970374 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6817127 6817176 -136969279 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6818244 6818373 -136968082 + CT-rich Low_complexity Low_complexity 4 131 0 271 310 110 14 chr12 6820064 6820209 -136966246 - L2 LINE L2 -173 3099 2941 258 359 35 14 chr12 6820351 6820493 -136965962 - MIR3 SINE MIR -62 146 2 870 225 0 11 chr12 6821326 6821517 -136964938 - AluJo SINE Alu -1 311 123 293 246 0 14 chr12 6821520 6821589 -136964866 + MIR SINE MIR 82 149 -59 421 261 37 22 chr12 6821648 6821782 -136964673 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6822139 6822161 -136964294 + AT_rich Low_complexity Low_complexity 1 22 0 257 0 0 0 chr12 6822197 6822227 -136964228 - MER11C LTR ERVK -1041 30 1 2265 86 0 13 chr12 6822698 6823013 -136963442 + AluY SINE Alu 1 311 0 977 176 32 68 chr12 6823055 6823276 -136963179 - MER20 DNA MER1_type 0 219 7 2015 128 0 28 chr12 6823448 6823769 -136962686 + AluSx SINE Alu 1 312 0 747 264 103 35 chr12 6824101 6824449 -136962006 - LTR33A LTR ERVL -12 511 140 367 282 10 87 chr12 6824663 6824742 -136961713 + L1ME3 LINE L1 5973 6057 -105 2123 126 3 0 chr12 6824742 6825051 -136961404 + AluSg SINE Alu 1 310 0 367 282 10 87 chr12 6825051 6825177 -136961278 + L1ME3 LINE L1 6057 6162 0 521 208 51 97 chr12 6825231 6825447 -136961008 + L1MC5 LINE L1 7697 7902 -59 188 302 94 10 chr12 6825937 6826033 -136960422 + MIR3 SINE MIR 2 105 -103 * 374 309 87 0 chr12 6826030 6826156 -136960299 - L2 LINE L2 0 3272 3136 193 338 39 0 chr12 6826414 6826491 -136959964 + MIR3 SINE MIR 108 187 -21 2568 30 3 0 chr12 6828674 6828972 -136957483 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6829654 6829686 -136956769 + (CA)n Simple_repeat Simple_repeat 2 33 0 716 308 5 19 chr12 6829988 6830199 -136956256 - MIR SINE MIR -30 232 25 371 294 117 4 chr12 6830202 6830433 -136956022 - L1ME4a LINE L1 -21 6100 5844 410 240 199 0 chr12 6830465 6830611 -136955844 - MIR3 SINE MIR -14 194 20 1287 224 99 11 chr12 6831974 6832336 -136954119 - L2 LINE L2 0 3313 2920 279 194 0 60 chr12 6832410 6832477 -136953978 + AluJo SINE Alu 85 147 -155 2120 93 0 4 chr12 6832592 6832872 -136953583 + AluSx SINE Alu 24 302 -10 832 176 0 13 chr12 6832883 6833036 -136953419 + FRAM SINE Alu 26 176 0 295 181 28 0 chr12 6833036 6833108 -136953347 + GA-rich Low_complexity Low_complexity 1 74 0 844 212 88 14 chr12 6834746 6834963 -136951492 - MIR SINE MIR -2 260 28 1781 153 3 10 chr12 6835158 6835459 -136950996 - AluJo SINE Alu -13 299 1 1606 175 7 20 chr12 6836149 6836441 -136950014 - AluJo SINE Alu -22 290 3 2138 169 54 16 chr12 6836450 6836823 -136949632 - MLT1B LTR MaLR -3 387 1 786 310 40 23 chr12 6837208 6837605 -136948850 + L1M3b LINE L1 1 404 -5877 500 317 50 19 chr12 6837886 6838145 -136948310 + MLT1L LTR MaLR 322 588 -27 932 197 0 0 chr12 6838430 6838582 -136947873 + MER44D DNA MER2_type 13 164 -541 854 193 46 47 chr12 6838906 6839259 -136947196 + LTR35 LTR ERV1 191 618 0 1832 162 17 5 chr12 6839259 6839775 -136946680 + MER44D DNA MER2_type 160 605 0 1106 261 53 78 chr12 6839793 6840121 -136946334 - L1MC4a LINE L1 -1913 5895 5560 2391 58 0 3 chr12 6840121 6840416 -136946039 - AluY SINE Alu -17 294 1 1106 261 53 78 chr12 6840416 6840670 -136945785 - L1MC4a LINE L1 -2248 5560 5326 1814 135 37 7 chr12 6840670 6840966 -136945489 - AluJb SINE Alu -7 305 1 1106 261 53 78 chr12 6840966 6840987 -136945468 - L1MC4a LINE L1 -2482 5326 5306 261 294 105 46 chr12 6841083 6841367 -136945088 - L1MC4a LINE L1 -1307 4839 4516 2322 92 0 0 chr12 6841367 6841671 -136944784 - AluSx SINE Alu -8 304 1 261 294 105 46 chr12 6841671 6841842 -136944613 - L1MC4a LINE L1 -1630 4516 4357 2384 77 0 0 chr12 6841894 6842205 -136944250 - AluY SINE Alu 0 311 1 804 164 0 14 chr12 6842253 6842393 -136944062 - AluJo SINE Alu -174 138 1 834 150 0 14 chr12 6842441 6842581 -136943874 - AluJo SINE Alu -174 138 1 855 143 0 14 chr12 6842629 6842769 -136943686 - AluJo SINE Alu -174 138 1 320 272 98 0 chr12 6842803 6842895 -136943560 - L1MC4a LINE L1 -2012 4134 4034 213 270 14 27 chr12 6843017 6843091 -136943364 - L2 LINE L2 -742 2572 2500 324 368 95 35 chr12 6843163 6843617 -136942838 - L2 LINE L2 -7 3265 2736 233 193 0 18 chr12 6843635 6843692 -136942763 + L1MC4 LINE L1 6648 6703 -1339 347 247 71 0 chr12 6843697 6843782 -136942673 + L1MC4 LINE L1 6618 6708 -1334 1954 117 0 0 chr12 6843783 6844056 -136942399 - AluSx SINE Alu -39 273 1 467 256 47 0 chr12 6844067 6844196 -136942259 - L1ME3 LINE L1 -30 6132 5998 1938 137 13 0 chr12 6844295 6844595 -136941860 - AluSq SINE Alu -9 304 1 1753 129 47 35 chr12 6844608 6844926 -136941529 - L1MD3 LINE L1 0 7995 7674 1342 177 15 11 chr12 6844926 6845192 -136941263 + AluJb SINE Alu 46 312 0 712 129 39 25 chr12 6845195 6845327 -136941128 - L1ME3 LINE L1 -568 5594 5455 1926 79 0 0 chr12 6845505 6845757 -136940698 - AluY SINE Alu 0 311 60 2643 223 76 19 chr12 6845974 6846169 -136940286 - L1MC/D LINE L1 -743 6198 6016 2040 125 0 22 chr12 6846169 6846305 -136940150 + AluSx SINE Alu 1 138 -174 2259 86 3 10 chr12 6846305 6846619 -136939836 + AluSp SINE Alu 1 312 -1 2040 125 0 22 chr12 6846619 6846801 -136939654 + AluSx SINE Alu 138 312 0 2643 223 76 19 chr12 6846801 6847552 -136938903 - L1MC/D LINE L1 -925 6016 5291 1566 170 6 45 chr12 6847556 6847867 -136938588 - AluJo SINE Alu -13 299 1 317 269 80 70 chr12 6848020 6848421 -136938034 - L1MC5 LINE L1 -62 7899 7495 300 252 84 8 chr12 6848420 6848539 -136937916 - L1MC5 LINE L1 -1201 6760 6633 * 2283 80 0 0 chr12 6848556 6848857 -136937598 - AluSx SINE Alu -11 301 1 472 279 39 0 chr12 6849574 6849703 -136936752 - ERVL LTR ERVL -1271 4493 4360 735 301 57 52 chr12 6849731 6849844 -136936611 - ERVL LTR ERVL -1496 4268 4157 2241 92 0 0 chr12 6849844 6850138 -136936317 - AluSx SINE Alu -12 300 7 735 301 57 52 chr12 6850138 6850519 -136935936 - ERVL LTR ERVL -1607 4157 3772 300 280 0 0 chr12 6850589 6850664 -136935791 - MIR SINE MIR 0 262 188 2042 122 13 0 chr12 6850788 6851130 -136935325 - AluSx SINE Alu 0 312 1 419 219 29 0 chr12 6851138 6851243 -136935212 - L1MC/D LINE L1 -1662 5279 5172 955 182 79 105 chr12 6851263 6851295 -136935160 - L1MCc LINE L1 -4620 2502 2471 1969 105 40 7 chr12 6851295 6851591 -136934864 - AluSq SINE Alu -7 306 1 955 182 79 105 chr12 6851591 6851689 -136934766 - L1MCc LINE L1 -4651 2471 2372 830 161 0 0 chr12 6851689 6851819 -136934636 + FLAM_C SINE Alu 1 130 -3 955 182 79 105 chr12 6851819 6851843 -136934612 - L1MCc LINE L1 -4750 2372 2349 1952 107 71 0 chr12 6851843 6852123 -136934332 + AluSx SINE Alu 1 300 -12 955 182 79 105 chr12 6852123 6852433 -136934022 - L1MCc LINE L1 -4773 2349 2032 186 43 0 0 chr12 6852433 6852456 -136933999 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 955 182 79 105 chr12 6852456 6852596 -136933859 - L1MCc LINE L1 -5090 2032 1681 1176 213 107 80 chr12 6853088 6853360 -136933095 - L1MCc LINE L1 -4852 1570 1307 1879 133 13 32 chr12 6853360 6853676 -136932779 - AluSg SINE Alu 0 310 1 1176 213 107 80 chr12 6853676 6854166 -136932289 - L1MCc LINE L1 -5115 1307 814 1983 124 17 0 chr12 6854286 6854584 -136931871 - AluSx SINE Alu -9 303 1 231 317 33 28 chr12 6854704 6854884 -136931571 - L1MCc LINE L1 -5981 442 262 377 210 48 29 chr12 6854901 6855049 -136931406 - L1MCb LINE L1 -5890 532 52 1591 93 4 9 chr12 6855119 6855344 -136931111 - AluSg/x SINE Alu -16 296 73 1472 211 39 58 chr12 6855344 6855589 -136930866 - L1MCa LINE L1 -1453 4973 4738 2050 119 0 0 chr12 6855589 6855883 -136930572 - AluSx SINE Alu -14 298 5 1472 211 39 58 chr12 6855883 6856069 -136930386 - L1MCa LINE L1 -1688 4738 4550 1899 125 0 7 chr12 6856069 6856358 -136930097 + AluSx SINE Alu 1 287 -25 5471 192 52 39 chr12 6856366 6856711 -136929744 - L1MCa LINE L1 -2438 3988 3649 2092 110 3 3 chr12 6856711 6857012 -136929443 - AluSq SINE Alu -12 301 1 5471 192 52 39 chr12 6857012 6858062 -136928393 - L1MCa LINE L1 -2777 3649 2556 2215 110 0 3 chr12 6858062 6858372 -136928083 - AluSg SINE Alu -1 309 1 5471 192 52 39 chr12 6858372 6859000 -136927455 - L1MCa LINE L1 -3870 2556 1937 982 105 0 0 chr12 6859000 6859133 -136927322 + AluSq/x SINE Alu 1 133 -179 1916 157 0 3 chr12 6859145 6859458 -136926997 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6859557 6859675 -136926780 - L2 LINE L2 0 3272 3134 407 341 116 26 chr12 6859767 6860269 -136926186 + L2 LINE L2 863 1409 -1905 425 167 3 0 chr12 6860283 6860367 -136926088 + L1ME2 LINE L1 5459 5543 -621 3090 146 62 22 chr12 6860371 6860905 -136925550 - MER21A LTR ERV1 0 931 377 1478 107 95 8 chr12 6860911 6861154 -136925301 - MER21A LTR ERV1 -667 264 1 1662 168 35 17 chr12 6861157 6861502 -136924953 + L1ME2 LINE L1 5546 5896 -268 1756 127 10 45 chr12 6861510 6861824 -136924631 + AluSq SINE Alu 1 303 -10 645 168 44 0 chr12 6861833 6861946 -136924509 - L1ME LINE L1 -421 5700 5583 211 333 55 36 chr12 6862047 6862212 -136924243 + L2 LINE L2 3105 3272 -41 297 218 0 0 chr12 6862464 6862519 -136923936 - MER91 DNA MER1_type -7 189 135 182 345 18 35 chr12 6862621 6862734 -136923721 + L2 LINE L2 2981 3091 -181 1761 141 17 7 chr12 6862790 6863087 -136923368 + AluJb SINE Alu 1 300 -12 2394 68 7 0 chr12 6863155 6863463 -136922992 - AluSg SINE Alu 0 310 1 217 250 39 0 chr12 6863483 6863535 -136922920 + L2 LINE L2 3258 3311 -2 241 326 45 11 chr12 6863539 6863628 -136922827 + MIR3 SINE MIR 102 193 -15 2088 104 0 3 chr12 6864307 6864626 -136921829 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6864638 6864669 -136921786 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1269 121 0 0 chr12 6864669 6864851 -136921604 - AluSg/x SINE Alu -2 310 129 2294 82 26 0 chr12 6864851 6865155 -136921300 - AluSx SINE Alu 0 312 1 667 162 8 17 chr12 6865182 6865299 -136921156 + FLAM_C SINE Alu 3 118 -25 2028 100 3 14 chr12 6865305 6865621 -136920834 - AluSg SINE Alu 0 310 1 2315 93 0 3 chr12 6865674 6865984 -136920471 - AluSc SINE Alu 0 309 1 3157 117 7 7 chr12 6866215 6866678 -136919777 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6867447 6867472 -136918983 + AT_rich Low_complexity Low_complexity 1 25 0 386 274 46 39 chr12 6867735 6867888 -136918567 + MLT2E LTR ERVL 1 154 -474 637 273 47 13 chr12 6867907 6868302 -136918153 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6868450 6868475 -136917980 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6868508 6868539 -136917916 + AT_rich Low_complexity Low_complexity 1 31 0 1893 148 0 3 chr12 6868539 6868844 -136917611 + AluJb SINE Alu 2 305 -7 1598 146 0 43 chr12 6869520 6869801 -136916654 + AluSx SINE Alu 1 269 -43 230 121 0 0 chr12 6869801 6869834 -136916621 + AluSx SINE Alu 249 281 -20 186 0 88 0 chr12 6869838 6869872 -136916583 + A-rich Low_complexity Low_complexity 2 38 0 1810 137 16 22 chr12 6870307 6870621 -136915834 + AluJb SINE Alu 1 312 0 2126 100 3 7 chr12 6870646 6870945 -136915510 + AluSq SINE Alu 1 298 -15 4329 177 27 44 chr12 6870945 6871010 -136915445 + L1MB7 LINE L1 4362 4427 -1753 2078 123 0 3 chr12 6871010 6871311 -136915144 + AluSx SINE Alu 1 300 -12 4329 177 27 44 chr12 6871311 6872033 -136914422 + L1MB7 LINE L1 4427 5159 -1021 2363 51 7 0 chr12 6872033 6872328 -136914127 - AluY SINE Alu -14 297 1 4329 177 27 44 chr12 6872328 6872401 -136914054 + L1MB7 LINE L1 5159 5232 -948 2188 63 0 48 chr12 6872401 6872716 -136913739 - AluY SINE Alu -11 300 1 4329 177 27 44 chr12 6872716 6873001 -136913454 + L1MB7 LINE L1 5232 5488 -692 304 193 91 0 chr12 6873008 6873096 -136913359 + L1MB7 LINE L1 6073 6168 -16 781 315 91 26 chr12 6873533 6874102 -136912353 + L1MC4a LINE L1 5347 5952 -1856 1617 189 10 0 chr12 6874219 6874520 -136911935 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6874935 6874957 -136911498 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 0 chr12 6874963 6875276 -136911179 + AluSc SINE Alu 1 313 0 2085 132 3 0 chr12 6875276 6875580 -136910875 + AluSq SINE Alu 1 305 -8 1837 136 34 0 chr12 6875610 6875905 -136910550 + AluSx SINE Alu 8 312 0 360 130 91 26 chr12 6876302 6876379 -136910076 - L1ME3A LINE L1 -208 5962 5881 480 101 56 11 chr12 6876427 6876516 -136909939 - L1MB4 LINE L1 -1 6179 6087 357 244 16 32 chr12 6876517 6876640 -136909815 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6876643 6876798 -136909657 + CT-rich Low_complexity Low_complexity 3 163 0 1583 138 0 0 chr12 6876799 6877039 -136909416 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6877043 6877063 -136909392 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6877214 6877243 -136909212 + AT_rich Low_complexity Low_complexity 1 29 0 371 155 184 19 chr12 6877440 6877543 -136908912 + MIR SINE MIR 31 150 -58 476 219 102 71 chr12 6877755 6877951 -136908504 + MER63A DNA MER1_type 2 203 -7 1857 118 0 70 chr12 6878197 6878336 -136908119 + AluJb SINE Alu 7 113 -199 2176 89 3 0 chr12 6878336 6878629 -136907826 + AluSp SINE Alu 2 295 -18 1857 118 0 70 chr12 6878629 6878804 -136907651 + AluJb SINE Alu 113 299 -13 2216 98 3 0 chr12 6878830 6879127 -136907328 + AluSx SINE Alu 5 302 -10 257 372 92 9 chr12 6879380 6879598 -136906857 - MIR SINE MIR -6 256 21 1444 114 72 50 chr12 6879938 6880224 -136906231 + AluJo SINE Alu 14 305 0 2374 71 0 3 chr12 6880226 6880536 -136905919 + AluY SINE Alu 1 309 -2 577 308 18 27 chr12 6880537 6880758 -136905697 + L1MEd LINE L1 473 691 -5428 691 126 10 0 chr12 6880826 6880929 -136905526 - FLAM_C SINE Alu -32 111 8 384 229 120 17 chr12 6880997 6881172 -136905283 + Charlie7 DNA MER1_type 2205 2397 -215 646 144 10 0 chr12 6881290 6881387 -136905068 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6881488 6881521 -136904934 + AT_rich Low_complexity Low_complexity 1 33 0 821 235 105 25 chr12 6882291 6882380 -136904075 + L1MEd LINE L1 2661 2742 -3387 1796 199 84 31 chr12 6882380 6882858 -136903597 - MLT1D LTR MaLR 0 505 3 821 235 105 25 chr12 6882858 6883160 -136903295 + L1MEd LINE L1 2742 3083 -3046 1957 122 7 0 chr12 6883161 6883447 -136903008 + AluSx SINE Alu 2 289 -23 21 0 0 0 chr12 6883538 6883559 -136902896 + AT_rich Low_complexity Low_complexity 1 21 0 1759 148 0 19 chr12 6883796 6884106 -136902349 - AluJo SINE Alu -8 304 1 389 316 19 52 chr12 6884127 6884282 -136902173 + L2 LINE L2 3121 3270 -2 2148 114 0 9 chr12 6885219 6885534 -136900921 + AluSx SINE Alu 1 312 0 985 132 0 0 chr12 6885751 6885887 -136900568 + AluSq/x SINE Alu 1 136 -177 1593 165 110 0 chr12 6885887 6886159 -136900296 + AluSg SINE Alu 1 302 -8 814 220 129 4 chr12 6887366 6887598 -136898857 + MER46C DNA MER2_type 78 338 0 872 204 0 0 chr12 6889349 6889501 -136896954 - FRAM SINE Alu -11 165 14 1284 156 66 80 chr12 6889542 6889825 -136896630 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6889825 6889849 -136896606 + (CA)n Simple_repeat Simple_repeat 1 24 0 1975 141 0 33 chr12 6889859 6890165 -136896290 + AluJb SINE Alu 9 304 -8 216 0 0 0 chr12 6890668 6890692 -136895763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1886 39 0 0 chr12 6890695 6890925 -136895530 - L1PA5 LINE L1 -13 6141 5912 2186 94 7 3 chr12 6891547 6891834 -136894621 + AluSg SINE Alu 16 303 -7 561 163 71 21 chr12 6891876 6891990 -136894465 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6891990 6892016 -136894439 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 561 163 71 21 chr12 6892016 6892034 -136894421 - L1MB7 LINE L1 -185 5999 5983 2155 138 0 3 chr12 6892034 6892345 -136894110 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6892352 6892484 -136893971 - AluSg/x SINE Alu 0 309 178 335 239 60 0 chr12 6892488 6892605 -136893850 + L1ME3A LINE L1 6043 6166 -4 2322 113 0 3 chr12 6892617 6892926 -136893529 + AluSq SINE Alu 1 308 -5 2371 101 10 0 chr12 6896784 6897091 -136889364 + AluSq SINE Alu 1 310 -3 2212 122 3 0 chr12 6897235 6897539 -136888916 + AluSx SINE Alu 1 305 -7 504 214 24 71 chr12 6898112 6898280 -136888175 - L1MC4 LINE L1 -16 8026 7867 632 229 13 38 chr12 6898432 6898589 -136887866 + MER97b DNA MER1_type? 27 179 -874 653 119 9 37 chr12 6898701 6898810 -136887645 + FLAM_A SINE Alu 4 109 -33 2270 107 10 0 chr12 6898812 6899103 -136887352 - AluSx SINE Alu -18 294 1 650 242 96 42 chr12 6899142 6899402 -136887053 - L1MC4 LINE L1 -313 7729 7456 2099 88 4 0 chr12 6899412 6899673 -136886782 - AluSp SINE Alu -13 300 39 2474 89 6 10 chr12 6899686 6900000 -136886455 - AluSq SINE Alu 0 313 1 235 224 0 0 chr12 6900073 6900122 -136886333 - MIR SINE MIR -157 105 57 357 222 70 105 chr12 6901118 6901153 -136885302 - MER97b DNA MER1_type? -886 167 132 2276 87 35 0 chr12 6901153 6901439 -136885016 + AluSg SINE Alu 1 296 -14 357 222 70 105 chr12 6901439 6901574 -136884881 - MER97b DNA MER1_type? -921 132 3 222 264 85 28 chr12 6902209 6902315 -136884140 - L2 LINE L2 -39 3233 3122 339 298 193 6 chr12 6902506 6902687 -136883768 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6902772 6902811 -136883644 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2209 123 3 0 chr12 6902813 6903113 -136883342 - AluSx SINE Alu -11 301 1 2008 136 0 4 chr12 6903293 6903608 -136882847 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6907854 6907874 -136878581 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6908402 6908458 -136877997 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6908458 6908494 -136877961 + (TG)n Simple_repeat Simple_repeat 2 37 0 893 128 0 0 chr12 6909399 6909532 -136876923 + FLAM_A SINE Alu 1 133 0 2628 65 8 0 chr12 6909826 6910178 -136876277 + THE1A LTR MaLR 1 355 0 2890 48 0 3 chr12 6910178 6910549 -136875906 + THE1A-int LTR MaLR 1 370 -1210 4842 114 3 1 chr12 6910560 6911244 -136875211 + THE1A-int LTR MaLR 482 1166 -414 240 287 201 12 chr12 6914269 6914433 -136872022 + L2 LINE L2 2335 2529 -785 1410 188 61 37 chr12 6914487 6914543 -136871912 - HsTC2 DNA Tc2 -22 1876 1823 2283 97 7 3 chr12 6914543 6914841 -136871614 + AluSx SINE Alu 1 299 -13 1410 188 61 37 chr12 6914841 6915194 -136871261 - HsTC2 DNA Tc2 -75 1823 1281 1008 169 5 31 chr12 6915565 6915745 -136870710 + AluJo SINE Alu 123 299 -13 2109 132 26 0 chr12 6915745 6916049 -136870406 + AluSx SINE Alu 1 312 0 1008 169 5 31 chr12 6916049 6916063 -136870392 + AluJo SINE Alu 299 312 0 1911 143 0 28 chr12 6916164 6916451 -136870004 + AluJb SINE Alu 11 289 -23 2646 45 0 13 chr12 6916470 6916778 -136869677 - AluY SINE Alu -7 304 1 2602 177 73 90 chr12 6916778 6917559 -136868896 - L1MD2 LINE L1 -10 6349 5582 571 146 0 0 chr12 6917564 6917646 -136868809 - FLAM_A SINE Alu -41 101 20 604 181 39 19 chr12 6917664 6917819 -136868636 - L1MD2 LINE L1 -879 5480 5323 7546 45 3 200 chr12 6917819 6919189 -136867266 - SVA Other Other -4 1382 283 1286 103 6 0 chr12 6919189 6919354 -136867101 - AluSq SINE Alu -134 179 14 325 296 35 52 chr12 6919392 6919507 -136866948 - HAL1 LINE L1 -1230 1277 1165 547 317 27 0 chr12 6919507 6919693 -136866762 - L1MEd LINE L1 -5368 751 561 615 177 54 20 chr12 6920164 6920311 -136866144 + L1M4 LINE L1 4695 4846 -1300 2464 77 0 3 chr12 6920320 6920619 -136865836 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6923902 6923928 -136862527 + AT_rich Low_complexity Low_complexity 1 26 0 2298 73 45 7 chr12 6924087 6924376 -136862079 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6924805 6924833 -136861622 + AT_rich Low_complexity Low_complexity 1 28 0 2310 92 3 3 chr12 6925217 6925510 -136860945 + AluSg SINE Alu 1 293 -17 1637 202 14 10 chr12 6925660 6925957 -136860498 + AluJo SINE Alu 1 298 -14 717 121 44 117 chr12 6925966 6926099 -136860356 + L1MB8 LINE L1 5823 5964 -220 2095 114 3 24 chr12 6926099 6926396 -136860059 + AluSx SINE Alu 18 308 -4 717 121 44 117 chr12 6926396 6926417 -136860038 + L1MB8 LINE L1 5964 5985 -199 1676 148 0 0 chr12 6926417 6926647 -136859808 + AluSx SINE Alu 1 230 -82 717 121 44 117 chr12 6926647 6926775 -136859680 + L1MB8 LINE L1 5985 6067 -117 2233 106 0 7 chr12 6926816 6927108 -136859347 + AluSc SINE Alu 1 290 -19 1361 136 37 0 chr12 6927108 6927381 -136859074 + L1MA8 LINE L1 6009 6291 0 512 193 18 0 chr12 6927390 6927504 -136858951 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6927681 6927706 -136858749 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 648 170 36 0 chr12 6927706 6927818 -136858637 - AluJb SINE Alu -195 117 2 305 240 20 137 chr12 6927819 6927887 -136858568 - HAL1 LINE L1 -139 2368 2294 1896 139 3 58 chr12 6927887 6928027 -136858428 - AluJb SINE Alu 0 312 166 2492 81 0 7 chr12 6928027 6928334 -136858121 - AluSg SINE Alu -5 305 1 1896 139 3 58 chr12 6928334 6928523 -136857932 - AluJb SINE Alu -146 166 1 2138 130 0 3 chr12 6928533 6928858 -136857597 - AluSx SINE Alu 0 324 1 305 240 20 137 chr12 6928858 6928923 -136857532 - HAL1 LINE L1 -223 2284 2240 * 475 322 99 5 chr12 6928922 6929124 -136857331 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6929124 6929300 -136857155 - AluSg/x SINE Alu -1 309 138 2195 91 0 18 chr12 6929300 6929613 -136856842 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6929613 6929649 -136856806 - AluSg/x SINE Alu -172 138 103 1678 128 6 106 chr12 6929701 6930030 -136856425 - AluJo SINE Alu -10 302 7 2355 97 0 0 chr12 6930127 6930426 -136856029 + AluY SINE Alu 1 299 -12 1614 116 16 0 chr12 6930432 6930682 -136855773 - L1M4 LINE L1 -382 5802 5549 2506 65 0 0 chr12 6930693 6930985 -136855470 - AluY SINE Alu -19 292 1 225 254 162 81 chr12 6931102 6931275 -136855180 + L2 LINE L2 2897 3083 -189 1999 156 0 22 chr12 6931372 6931687 -136854768 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6931748 6931771 -136854684 + (A)n Simple_repeat Simple_repeat 1 23 0 837 293 52 40 chr12 6931872 6932008 -136854447 + HERV16 LTR ERVL 2404 2537 -2459 1999 150 3 16 chr12 6932008 6932322 -136854133 - AluJb SINE Alu -1 311 2 2322 102 10 0 chr12 6932330 6932634 -136853821 - AluSp SINE Alu -6 307 1 837 293 52 40 chr12 6932634 6932812 -136853643 + HERV16 LTR ERVL 2543 2731 -2265 2253 97 3 13 chr12 6932835 6933135 -136853320 - AluSg SINE Alu -4 306 10 1042 143 104 137 chr12 6933654 6933961 -136852494 - AluJo SINE Alu -5 297 1 1396 160 15 108 chr12 6933972 6934173 -136852282 - AluJo SINE Alu 0 302 143 2100 100 16 48 chr12 6934173 6934483 -136851972 - AluY SINE Alu -11 300 1 1396 160 15 108 chr12 6934483 6934613 -136851842 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6934621 6934642 -136851813 + AT_rich Low_complexity Low_complexity 1 21 0 347 250 24 12 chr12 6935591 6935675 -136850780 + MIR SINE MIR 1 85 -177 377 309 7 33 chr12 6936564 6936716 -136849739 - MIR SINE MIR -80 182 35 305 274 92 30 chr12 6937393 6937557 -136848898 + MIR SINE MIR 87 260 -2 587 164 141 16 chr12 6938817 6938945 -136847510 + MIR SINE MIR 9 152 -110 2326 114 0 7 chr12 6939061 6939368 -136847087 - AluSx SINE Alu -2 310 6 1794 164 0 23 chr12 6939419 6939718 -136846737 - AluJb SINE Alu 0 312 21 641 179 0 0 chr12 6939718 6939824 -136846631 - AluJb SINE Alu -59 253 148 241 179 0 0 chr12 6939824 6939863 -136846592 - AluJb SINE Alu -261 39 1 466 101 25 25 chr12 6939863 6939942 -136846513 - Tigger3(Golem) DNA MER2_type -674 2355 2277 * 518 219 29 0 chr12 6939933 6940038 -136846417 - Tigger3(Golem) DNA MER2_type -2921 108 1 1958 93 100 3 chr12 6940314 6940625 -136845830 - L1PA10 LINE L1 -10 6158 5818 2338 97 3 0 chr12 6940630 6940930 -136845525 - AluSg SINE Alu -9 301 1 1687 145 86 21 chr12 6940932 6941222 -136845233 - AluJb SINE Alu -3 309 1 466 250 103 51 chr12 6941313 6941469 -136844986 - L2 LINE L2 -1 3312 3149 2348 147 47 33 chr12 6941472 6941626 -136844829 - MER44D DNA MER2_type -1892 595 445 2233 89 10 3 chr12 6941626 6941917 -136844538 - AluSc SINE Alu -16 293 1 2348 147 47 33 chr12 6941917 6942212 -136844243 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6942213 6942398 -136844057 - AluJb SINE Alu -1 311 128 2119 126 0 13 chr12 6942403 6942705 -136843750 - AluSx SINE Alu -14 298 1 516 194 0 10 chr12 6942705 6942803 -136843652 - MER44D DNA MER2_type -608 97 1 2509 233 190 113 chr12 6942825 6942852 -136843603 - L2 LINE L2 -139 3174 3151 2030 149 3 7 chr12 6942852 6943154 -136843301 + AluJb SINE Alu 1 301 -11 485 181 133 0 chr12 6943159 6943264 -136843191 + FLAM_A SINE Alu 2 120 -13 2509 233 190 113 chr12 6943264 6943546 -136842909 - L2 LINE L2 -165 3148 2889 464 216 116 88 chr12 6943546 6943727 -136842728 + MER5A DNA MER1_type 4 189 0 2509 233 190 113 chr12 6943727 6944070 -136842385 - L2 LINE L2 -424 2889 2574 1071 116 23 52 chr12 6944070 6944242 -136842213 - AluSg/x SINE Alu -13 299 133 1490 116 209 8 chr12 6944242 6944501 -136841954 - AluY SINE Alu 0 311 1 2509 233 190 113 chr12 6944501 6945595 -136840860 - L2 LINE L2 -738 2575 1095 1027 133 20 0 chr12 6945682 6945833 -136840622 + FRAM SINE Alu 1 154 -22 2047 95 24 44 chr12 6945846 6946168 -136840287 - AluSg SINE Alu 0 316 1 1158 258 52 27 chr12 6946288 6946503 -136839952 - MSTD LTR MaLR -15 381 173 2376 71 0 4 chr12 6946503 6946783 -136839672 + AluSg SINE Alu 1 279 -31 1158 258 52 27 chr12 6946783 6946804 -136839651 - MSTD LTR MaLR -223 173 154 1493 94 0 5 chr12 6946804 6946996 -136839459 + AluSg/x SINE Alu 94 284 -25 1158 258 52 27 chr12 6946996 6947127 -136839328 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6947184 6947257 -136839198 + (TA)n Simple_repeat Simple_repeat 2 74 0 1121 159 56 24 chr12 6947260 6947401 -136839054 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6947401 6947425 -136839030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2040 133 4 0 chr12 6947426 6947705 -136838750 - AluSx SINE Alu -32 280 1 1121 159 56 24 chr12 6947705 6947812 -136838643 - Tigger2 DNA MER2_type -137 2581 2457 3089 131 8 82 chr12 6947855 6948086 -136838369 - Tigger2 DNA MER2_type -1974 744 497 2160 102 7 7 chr12 6948086 6948379 -136838076 - AluSq SINE Alu -20 293 1 3089 131 8 82 chr12 6948379 6948570 -136837885 - Tigger2 DNA MER2_type -2221 497 293 1815 153 6 80 chr12 6948570 6948896 -136837559 + AluSx SINE Alu 1 302 -10 3089 131 8 82 chr12 6948896 6948973 -136837482 - Tigger2 DNA MER2_type -2425 293 212 1802 191 10 0 chr12 6948973 6949271 -136837184 - AluJb SINE Alu -11 301 1 3089 131 8 82 chr12 6949271 6949319 -136837136 - Tigger2 DNA MER2_type -2506 212 245 2458 57 0 10 chr12 6949319 6949618 -136836837 + AluY SINE Alu 1 296 -15 3089 131 8 82 chr12 6949618 6949700 -136836755 - Tigger2 DNA MER2_type -2472 246 159 1108 185 0 0 chr12 6949704 6949877 -136836578 + FRAM SINE Alu 1 165 -11 378 218 13 0 chr12 6949877 6949955 -136836500 - Tigger2 DNA MER2_type -2639 79 1 772 266 21 0 chr12 6949955 6950147 -136836308 + L1MC4 LINE L1 6689 6884 -1158 733 161 0 0 chr12 6950147 6950277 -136836178 - FLAM_C SINE Alu 0 143 14 266 178 0 0 chr12 6950324 6950369 -136836086 + FLAM_A SINE Alu 1 45 -88 2240 124 26 0 chr12 6950369 6950708 -136835747 - LTR10D LTR ERV1 0 513 166 1226 159 29 0 chr12 6950715 6950954 -136835501 - LTR10D LTR ERV1 -265 248 3 512 158 10 0 chr12 6950954 6951055 -136835400 + FLAM_A SINE Alu 39 140 -2 1814 132 33 50 chr12 6951062 6951365 -136835090 + AluJb SINE Alu 1 298 -14 3117 175 92 7 chr12 6951365 6952086 -136834369 + L1MC4a LINE L1 6838 7619 -189 2350 90 3 16 chr12 6952265 6952575 -136833880 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6953180 6953219 -136833236 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2174 120 13 10 chr12 6954334 6954642 -136831813 - AluSq SINE Alu -4 309 1 2194 116 0 7 chr12 6954713 6955006 -136831449 + AluSq SINE Alu 1 291 -22 2431 48 41 10 chr12 6955013 6955307 -136831148 + AluY SINE Alu 1 303 -8 210 143 0 0 chr12 6955307 6955342 -136831113 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3510 241 69 19 chr12 6955342 6956274 -136830181 - L2 LINE L2 -248 3065 2069 1727 118 111 8 chr12 6956274 6956536 -136829919 + AluJb SINE Alu 2 290 -22 3510 241 69 19 chr12 6956536 6956723 -136829732 - L2 LINE L2 -1244 2069 1893 2339 105 0 3 chr12 6956723 6957028 -136829427 - AluSg SINE Alu -6 304 1 1855 157 42 0 chr12 6958208 6958494 -136827961 - AluJo SINE Alu -14 298 1 2313 121 0 13 chr12 6958923 6959229 -136827226 + AluSx SINE Alu 1 302 -10 2401 82 0 0 chr12 6959238 6959531 -136826924 + AluSg SINE Alu 4 296 -14 370 263 40 66 chr12 6961261 6961413 -136825042 + MIR3 SINE MIR 77 206 -2 2393 104 0 13 chr12 6961518 6961834 -136824621 - AluSx SINE Alu 0 312 1 2534 44 0 17 chr12 6961906 6962203 -136824252 - AluY SINE Alu -19 292 1 631 126 19 80 chr12 6962370 6962566 -136823889 - FRAM SINE Alu -18 158 1 319 248 67 29 chr12 6962605 6962710 -136823745 - L1MC4a LINE L1 -1839 5969 5861 1125 149 29 11 chr12 6962721 6962896 -136823559 + AluSg/x SINE Alu 118 295 -15 1892 176 0 23 chr12 6962905 6963206 -136823249 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6963206 6963246 -136823209 + (TA)n Simple_repeat Simple_repeat 1 40 0 879 187 0 32 chr12 6963262 6963417 -136823038 - AluJ SINE Alu -23 289 140 514 174 10 10 chr12 6963481 6963579 -136822876 - AluJ SINE Alu -149 163 66 1714 181 13 25 chr12 6964413 6964727 -136821728 + AluJb SINE Alu 1 310 -2 809 154 0 49 chr12 6965104 6965247 -136821208 - AluJ SINE Alu -176 136 1 1875 146 13 17 chr12 6965317 6965618 -136820837 + AluJo SINE Alu 1 300 -12 2307 114 0 3 chr12 6966403 6966709 -136819746 - AluSg SINE Alu -4 306 2 756 246 78 8 chr12 6966917 6967161 -136819294 - MIR SINE MIR 0 262 2 336 270 30 10 chr12 6967202 6967302 -136819153 - L2 LINE L2 -218 3054 2953 2305 93 3 29 chr12 6967372 6967685 -136818770 + AluSx SINE Alu 1 305 -7 503 282 109 15 chr12 6972090 6972292 -136814163 + MIR SINE MIR 23 243 -19 1158 141 39 0 chr12 6973202 6973408 -136813047 - L1MC1 LINE L1 -1 6332 6119 1160 153 124 0 chr12 6973413 6973654 -136812801 - L1MC1 LINE L1 -252 6081 5811 2275 95 7 0 chr12 6974537 6974833 -136811622 + AluSp SINE Alu 1 298 -15 1003 213 19 5 chr12 6975208 6975424 -136811031 + MER20 DNA MER1_type 1 219 0 303 296 80 45 chr12 6982076 6982197 -136804258 + MIR SINE MIR 47 179 -83 1978 124 3 7 chr12 6982197 6982479 -136803976 + AluSx SINE Alu 15 295 -17 303 296 80 45 chr12 6982479 6982556 -136803899 + MIR SINE MIR 179 252 -10 1538 115 74 0 chr12 6983822 6984039 -136802416 + AluSg SINE Alu 1 233 -77 271 253 36 12 chr12 6985262 6985345 -136801110 - HsTC2 DNA Tc2 -1813 85 1 3460 91 13 58 chr12 6986278 6986698 -136799757 + MER1A DNA MER1_type 1 392 -2308 2409 84 7 0 chr12 6986698 6986997 -136799458 + AluSp SINE Alu 1 301 -12 3460 91 13 58 chr12 6986997 6987128 -136799327 + MER1A DNA MER1_type 392 527 0 2202 113 3 10 chr12 6987179 6987480 -136798975 - AluSx SINE Alu -13 299 1 2507 48 0 3 chr12 6987944 6988266 -136798189 + AluY SINE Alu 1 311 0 4270 158 5 30 chr12 6988271 6988426 -136798029 + MER44D DNA MER2_type 7 164 -2323 2524 53 0 10 chr12 6988426 6988726 -136797729 + AluY SINE Alu 2 298 -13 4270 158 5 30 chr12 6988726 6989313 -136797142 + MER44D DNA MER2_type 164 603 -2 2544 48 0 19 chr12 6989491 6989800 -136796655 - AluY SINE Alu -8 303 1 431 227 21 50 chr12 6989998 6990139 -136796316 - MIR SINE MIR 0 262 126 1448 175 90 11 chr12 6990139 6990437 -136796018 + AluJo SINE Alu 1 312 0 1219 182 5 23 chr12 6990446 6990660 -136795795 + AluJo SINE Alu 1 210 -102 281 229 24 0 chr12 6990715 6990798 -136795657 + GA-rich Low_complexity Low_complexity 4 88 0 305 298 0 19 chr12 6990818 6990922 -136795533 - MIR SINE MIR -141 121 20 249 200 46 15 chr12 6992509 6992574 -136793881 + GA-rich Low_complexity Low_complexity 5 71 0 1130 148 79 30 chr12 6996582 6996785 -136789670 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6998525 6998569 -136787886 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6998859 6998887 -136787568 + GC_rich Low_complexity Low_complexity 1 28 0 2294 81 7 10 chr12 6999356 6999652 -136786803 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 7000872 7001177 -136785278 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 7001284 7001576 -136784879 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 7001612 7001763 -136784692 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 7001764 7001875 -136784580 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 7001968 7002136 -136784319 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 7002136 7002430 -136784025 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 7002430 7002535 -136783920 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 7004360 7004562 -136781893 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 7005000 7005300 -136781155 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 7007143 7007305 -136779150 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 7007450 7007740 -136778715 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 7008164 7008357 -136778098 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 7008357 7008651 -136777804 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 7008651 7008786 -136777669 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 7009986 7010229 -136776226 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 7010233 7010331 -136776124 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 7011663 7011954 -136774501 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 7011956 7012251 -136774204 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 7012302 7012439 -136774016 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 7012780 7012896 -136773559 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 7014555 7014694 -136771761 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 7014694 7014991 -136771464 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 7014991 7015149 -136771306 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 7015158 7015455 -136771000 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 7015461 7015576 -136770879 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 7015576 7015871 -136770584 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 7015871 7015900 -136770555 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 7016753 7017041 -136769414 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 7017054 7017082 -136769373 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 7017239 7017494 -136768961 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 7017860 7018175 -136768280 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 7018177 7018480 -136767975 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 7018689 7018950 -136767505 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 7019061 7019092 -136767363 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 7019092 7019386 -136767069 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 7019386 7019568 -136766887 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 7019617 7019726 -136766729 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 7019953 7020112 -136766343 - AluSg/x SINE Alu -17 293 135 2044 141 13 10 chr12 7020148 7020454 -136766001 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 7022045 7022179 -136764276 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 7022179 7022314 -136764141 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 7022314 7022629 -136763826 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 7022629 7022782 -136763673 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 7022786 7023089 -136763366 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 7023089 7023270 -136763185 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 7023436 7023739 -136762716 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 7023739 7024040 -136762415 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 7024892 7025114 -136761341 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 7026982 7027044 -136759411 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 7027044 7027227 -136759228 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 7027242 7027301 -136759154 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 7027422 7027695 -136758760 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 7027728 7027760 -136758695 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 7028309 7028593 -136757862 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 7028612 7028813 -136757642 + AluSg/x SINE Alu 94 293 -17 2168 122 0 7 chr12 7028827 7029121 -136757334 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 7029128 7029415 -136757040 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 7029415 7029448 -136757007 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 7029454 7029706 -136756749 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 7029706 7030007 -136756448 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 7031507 7031806 -136754649 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 7031807 7031977 -136754478 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 7031977 7032194 -136754261 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 7032194 7032207 -136754248 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 7032211 7032498 -136753957 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 7032498 7032796 -136753659 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 7032796 7032928 -136753527 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 7032928 7033224 -136753231 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 7033224 7033519 -136752936 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 7033550 7033852 -136752603 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 7033854 7034163 -136752292 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 7034187 7034227 -136752228 + MIR SINE MIR 63 102 -106 2295 79 3 0 chr12 7036855 7037146 -136749309 - AluSp SINE Alu -21 292 1 2234 82 0 50 chr12 7038501 7038820 -136747635 + AluSq SINE Alu 1 303 -10 1069 159 0 0 chr12 7038820 7038990 -136747465 + AluSc SINE Alu 132 301 -8 1797 109 7 63 chr12 7039379 7039529 -136746926 + AluSx SINE Alu 1 126 -185 2294 82 0 0 chr12 7039529 7039822 -136746633 + AluSx SINE Alu 1 293 -19 1797 109 7 63 chr12 7039822 7039999 -136746456 + AluSx SINE Alu 126 311 0 2050 103 22 22 chr12 7039999 7040310 -136746145 + AluY SINE Alu 1 311 0 750 260 0 0 chr12 7040331 7040485 -136745970 + FRAM SINE Alu 1 154 -12 2125 104 3 10 chr12 7040492 7040801 -136745654 + AluSx SINE Alu 1 307 -5 2203 91 0 3 chr12 7041540 7041837 -136744618 + AluSc SINE Alu 1 296 -13 403 134 30 0 chr12 7041886 7041953 -136744502 - MER46A DNA MER2_type 0 236 168 259 148 37 0 chr12 7041923 7041977 -136744478 + MER46A DNA MER2_type 99 154 -82 * 1403 194 0 48 chr12 7042166 7042480 -136743975 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 7044990 7045012 -136741443 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2109 105 14 0 chr12 7047010 7047305 -136739150 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 7049676 7049799 -136736656 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 7050683 7050740 -136735715 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 7052747 7053050 -136733405 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 7053184 7053427 -136733028 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 7053439 7053744 -136732711 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7055956 7056015 -136730440 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7057150 7057299 -136729156 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7057679 7057841 -136728614 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7058131 7058436 -136728019 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 7058441 7058502 -136727953 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 7058624 7058882 -136727573 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 7058895 7059203 -136727252 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 7060411 7060722 -136725733 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 7060857 7060976 -136725479 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 7061859 7062164 -136724291 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 7062423 7062466 -136723989 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 7062466 7062752 -136723703 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 7062752 7062783 -136723672 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 7062783 7063096 -136723359 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 7063096 7063257 -136723198 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 7063257 7063566 -136722889 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 7063566 7063578 -136722877 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 7063753 7063807 -136722648 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 7064407 7064436 -136722019 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 7065105 7065180 -136721275 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 7065188 7065270 -136721185 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 7065395 7065701 -136720754 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 7065800 7066090 -136720365 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 7067005 7067170 -136719285 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 7068218 7068297 -136718158 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 7069117 7069366 -136717089 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 7069366 7069607 -136716848 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 7070218 7070348 -136716107 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 7070358 7070508 -136715947 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 7070729 7070820 -136715635 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 7070901 7071101 -136715354 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 7071419 7071717 -136714738 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 7072242 7072379 -136714076 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 7072800 7072896 -136713559 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 7074103 7074409 -136712046 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 7074412 7074721 -136711734 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 7076036 7076333 -136710122 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 7076333 7076469 -136709986 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 7076470 7076614 -136709841 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 7076834 7077067 -136709388 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 7077082 7077402 -136709053 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 7077406 7077512 -136708943 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 7077514 7077818 -136708637 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 7077952 7078196 -136708259 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 7078208 7078512 -136707943 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7080723 7080782 -136705673 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7081917 7082066 -136704389 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7082446 7082608 -136703847 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7082898 7083203 -136703252 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 7083207 7083510 -136702945 + AluSc SINE Alu 1 301 -8 222 314 161 17 chr12 7084045 7084250 -136702205 + MIR SINE MIR 20 248 -14 2321 85 3 0 chr12 7084260 7084565 -136701890 + AluSq SINE Alu 1 306 -7 204 280 51 108 chr12 7084827 7084984 -136701471 + L2 LINE L2 2568 2715 -599 749 167 19 119 chr12 7085133 7085343 -136701112 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7085773 7085855 -136700600 + (CA)n Simple_repeat Simple_repeat 2 84 0 2060 112 17 3 chr12 7086025 7086321 -136700134 + AluSx SINE Alu 1 300 -12 979 145 103 33 chr12 7086731 7086945 -136699510 + Charlie1 DNA MER1_type 5 233 -2528 512 136 104 0 chr12 7086935 7087060 -136699395 + Charlie1 DNA MER1_type 2620 2757 -4 * 358 57 80 11 chr12 7087102 7087190 -136699265 + GA-rich Low_complexity Low_complexity 1 94 0 251 266 18 83 chr12 7089379 7089488 -136696967 + MIR SINE MIR 1 102 -160 1514 168 6 78 chr12 7089493 7089624 -136696831 + AluJb SINE Alu 1 140 -172 2272 102 0 0 chr12 7089624 7089919 -136696536 + AluSq SINE Alu 1 295 -18 2339 85 0 13 chr12 7089920 7090236 -136696219 + AluSq SINE Alu 1 312 -1 2054 101 29 16 chr12 7090245 7090552 -136695903 + AluSx SINE Alu 1 311 -1 1514 168 6 78 chr12 7090552 7090729 -136695726 + AluJb SINE Alu 148 298 -14 2084 119 7 0 chr12 7090736 7091029 -136695426 + AluSx SINE Alu 1 295 -17 1893 182 0 0 chr12 7091036 7091338 -136695117 + AluSx SINE Alu 7 308 -4 302 277 139 7 chr12 7091407 7091544 -136694911 - L2 LINE L2 -1 3312 3158 842 133 7 0 chr12 7091627 7091762 -136694693 + AluSg/x SINE Alu 171 306 -6 292 164 0 33 chr12 7091872 7091933 -136694522 + MIR SINE MIR 119 177 -85 183 42 0 0 chr12 7092087 7092111 -136694344 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1755 154 54 42 chr12 7092119 7092384 -136694071 - L1MB4 LINE L1 -87 6093 5820 2354 76 3 10 chr12 7092384 7092698 -136693757 - AluSp SINE Alu -1 312 1 1755 154 54 42 chr12 7092698 7092841 -136693614 - L1MB4 LINE L1 -360 5820 5680 2354 64 14 0 chr12 7092922 7093217 -136693238 + AluY SINE Alu 1 299 -12 2184 88 10 7 chr12 7093218 7093515 -136692940 + AluY SINE Alu 1 298 -13 1591 186 9 40 chr12 7093567 7093764 -136692691 - AluJo SINE Alu 0 312 127 2155 103 0 17 chr12 7093764 7094065 -136692390 + AluSx SINE Alu 1 296 -16 1591 186 9 40 chr12 7094065 7094189 -136692266 - AluJo SINE Alu -185 127 1 482 325 55 65 chr12 7094376 7094761 -136691694 + L2 LINE L2 2837 3217 -55 656 170 0 0 chr12 7094978 7095084 -136691371 + AluSg/x SINE Alu 193 298 -14 2173 88 10 3 chr12 7095086 7095382 -136691073 + AluSq SINE Alu 1 298 -15 2389 81 0 0 chr12 7095786 7096096 -136690359 - AluY SINE Alu -1 310 1 1916 113 0 31 chr12 7096223 7096403 -136690052 - AluSx SINE Alu -3 309 140 2370 79 3 3 chr12 7096403 7096708 -136689747 - AluSp SINE Alu -8 305 1 1916 113 0 31 chr12 7096708 7096819 -136689636 - AluSx SINE Alu -172 140 27 244 54 27 0 chr12 7096939 7096976 -136689479 - AluSx SINE Alu -262 38 1 690 252 40 17 chr12 7096993 7097180 -136689275 + L1MEc LINE L1 2315 2470 -3745 1995 107 47 10 chr12 7097180 7097478 -136688977 + AluSx SINE Alu 1 309 -3 690 252 40 17 chr12 7097478 7097570 -136688885 + L1MEc LINE L1 2470 2558 -3657 1560 115 0 5 chr12 7097570 7097787 -136688668 + AluSx SINE Alu 1 216 -96 4536 61 3 12 chr12 7097787 7098429 -136688026 + LTR13 LTR ERVK 372 1007 0 1276 199 127 8 chr12 7098442 7098709 -136687746 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7098779 7098896 -136687559 + MIR3 SINE MIR 47 167 -41 198 238 48 48 chr12 7098970 7099033 -136687422 + L3 LINE CR1 1502 1564 -13 2369 121 30 30 chr12 7099225 7099589 -136686866 + THE1B LTR MaLR 1 364 0 2253 73 0 30 chr12 7099634 7099934 -136686521 - AluY SINE Alu -17 294 4 2194 99 10 0 chr12 7100349 7100643 -136685812 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7101677 7101809 -136684646 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7102393 7102501 -136683954 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7102591 7102886 -136683569 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7105328 7105641 -136680814 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7107113 7107352 -136679103 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7110670 7110976 -136675479 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7110976 7111146 -136675309 + AluSg/x SINE Alu 132 306 -4 809 129 0 24 chr12 7111309 7111433 -136675022 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7111510 7111831 -136674624 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7111836 7112118 -136674337 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7112270 7112365 -136674090 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7112365 7112665 -136673790 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7112666 7112760 -136673695 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7112760 7113072 -136673383 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7113072 7113169 -136673286 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7113667 7113709 -136672746 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7113711 7113963 -136672492 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7113963 7114100 -136672355 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7114100 7114410 -136672045 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7114414 7114866 -136671589 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7115167 7115514 -136670941 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7115533 7115621 -136670834 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7115665 7115736 -136670719 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7115937 7116165 -136670290 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7116531 7116589 -136669866 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7116589 7116890 -136669565 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7116890 7116902 -136669553 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7116902 7117238 -136669217 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7117238 7117366 -136669089 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7117513 7117811 -136668644 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7117880 7118157 -136668298 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7118717 7119019 -136667436 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7120505 7120666 -136665789 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7120916 7120944 -136665511 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7122105 7122183 -136664272 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7122470 7122508 -136663947 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7122557 7122604 -136663851 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7122655 7122748 -136663707 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7123497 7123520 -136662935 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7125512 7125580 -136660875 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7125823 7125924 -136660531 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7127740 7127887 -136658568 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7132382 7132437 -136654018 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7132864 7133001 -136653454 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7133537 7133675 -136652780 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7134075 7134142 -136652313 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7134519 7134557 -136651898 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7134785 7134846 -136651609 + (CA)n Simple_repeat Simple_repeat 1 61 0 397 213 159 8 chr12 7135334 7135474 -136650981 + MIR SINE MIR 34 191 -63 1980 169 0 7 chr12 7136209 7136511 -136649944 + AluJb SINE Alu 1 300 -12 242 169 0 68 chr12 7137159 7137218 -136649237 - MLT1F LTR MaLR -6 536 482 663 202 0 0 chr12 7137218 7137337 -136649118 + AluJo SINE Alu 1 119 -193 1413 96 0 0 chr12 7137337 7137514 -136648941 - AluSg/x SINE Alu -15 297 121 23 0 0 0 chr12 7137515 7137538 -136648917 + AT_rich Low_complexity Low_complexity 1 23 0 2247 82 0 14 chr12 7137538 7137831 -136648624 - AluY SINE Alu -22 289 1 918 235 0 0 chr12 7137852 7138039 -136648416 + AluJo SINE Alu 124 310 -2 1343 280 88 23 chr12 7138040 7138483 -136647972 - MLT1F LTR MaLR -68 474 3 212 261 120 43 chr12 7139501 7139593 -136646862 + MIR SINE MIR 118 216 -46 1970 161 0 27 chr12 7139737 7140066 -136646389 - 7SLRNA srpRNA srpRNA 0 320 1 1051 99 0 0 chr12 7140105 7140236 -136646219 - AluY SINE Alu -180 131 1 446 237 40 76 chr12 7140291 7140375 -136646080 + MIR SINE MIR 33 118 -144 1742 186 3 7 chr12 7140375 7140671 -136645784 + AluJo SINE Alu 1 295 -17 446 237 40 76 chr12 7140671 7140784 -136645671 + MIR SINE MIR 118 223 -39 2453 93 0 0 chr12 7141345 7141657 -136644798 + AluSx SINE Alu 1 312 0 780 174 82 51 chr12 7141672 7141820 -136644635 + L1MB3 LINE L1 5978 6135 -48 2443 96 0 0 chr12 7141820 7142121 -136644334 + AluSx SINE Alu 1 301 -11 780 174 82 51 chr12 7142121 7142167 -136644288 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7142167 7142195 -136644260 + AT_rich Low_complexity Low_complexity 1 28 0 276 274 53 11 chr12 7142202 7142297 -136644158 - L2 LINE L2 -8 3264 3166 665 259 30 35 chr12 7142411 7142643 -136643812 + MLT1J LTR MaLR 279 509 -2 301 286 179 12 chr12 7142703 7142871 -136643584 + L2 LINE L2 3117 3312 -1 239 321 62 27 chr12 7142872 7142984 -136643471 - MER102b DNA MER1_type 0 341 226 * 800 281 58 8 chr12 7142957 7143199 -136643256 - MLT1J LTR MaLR -242 269 16 1402 154 27 64 chr12 7143243 7143541 -136642914 + Charlie1a DNA MER1_type 1 287 -1168 572 252 25 33 chr12 7143542 7143784 -136642671 + AluSq SINE Alu 2 241 -72 2341 93 16 19 chr12 7144692 7144866 -136641589 - AluSx SINE Alu 0 312 138 2233 124 0 3 chr12 7144866 7145173 -136641282 - AluSg SINE Alu -4 306 1 2341 93 16 19 chr12 7145173 7145311 -136641144 - AluSx SINE Alu -174 138 1 211 189 38 19 chr12 7145338 7145391 -136641064 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7146082 7146112 -136640343 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7146254 7146283 -136640172 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7147346 7147392 -136639063 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7147404 7147472 -136638983 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7147471 7147512 -136638943 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2300 118 0 16 chr12 7147865 7148180 -136638275 + AluSx SINE Alu 1 310 -2 419 254 25 51 chr12 7148865 7148943 -136637512 + Charlie1b DNA MER1_type 1 77 -1378 2198 106 3 16 chr12 7148943 7149246 -136637209 - AluSx SINE Alu -13 299 1 419 254 25 51 chr12 7149246 7149285 -136637170 + Charlie1b DNA MER1_type 77 115 -1340 468 167 71 0 chr12 7149285 7149369 -136637086 + AluSg/x SINE Alu 193 282 -27 237 159 0 0 chr12 7149369 7149413 -136637042 + (CA)n Simple_repeat Simple_repeat 1 44 0 1162 171 115 67 chr12 7149494 7149591 -136636864 + Charlie1b DNA MER1_type 149 240 -2521 1740 178 7 3 chr12 7149591 7149883 -136636572 + AluJo SINE Alu 2 294 -18 1162 171 115 67 chr12 7149883 7150141 -136636314 + Charlie1b DNA MER1_type 240 521 -2 295 346 0 0 chr12 7153016 7153097 -136633358 + L2 LINE L2 3191 3271 -1 202 262 252 37 chr12 7154105 7154212 -136632243 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7154530 7154553 -136631902 + AT_rich Low_complexity Low_complexity 1 23 0 360 300 132 11 chr12 7154674 7154864 -136631591 - MIR SINE MIR -1 261 49 249 254 36 0 chr12 7154867 7154922 -136631533 + L3 LINE CR1 1432 1488 -89 2307 81 7 10 chr12 7155463 7155758 -136630697 + AluSx SINE Alu 2 295 -17 564 238 37 6 chr12 7156493 7156657 -136629798 - MIR SINE MIR -45 217 49 420 235 35 35 chr12 7158173 7158288 -136628167 + L2 LINE L2 3193 3307 -6 1589 178 63 14 chr12 7159422 7159709 -136626746 - AluJb SINE Alu -11 301 1 2233 114 7 0 chr12 7159811 7160108 -136626347 + AluSq SINE Alu 1 299 -14 2279 88 27 7 chr12 7160379 7160674 -136625781 + AluSq SINE Alu 1 301 -12 1274 201 10 102 chr12 7161454 7161758 -136624697 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7161764 7161821 -136624634 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1574 183 67 0 chr12 7161829 7162114 -136624341 + AluJb SINE Alu 9 312 0 2168 105 7 0 chr12 7162457 7162768 -136623687 + AluSx SINE Alu 5 317 0 1870 156 57 0 chr12 7162840 7163123 -136623332 + AluSx SINE Alu 1 299 -13 2181 127 0 0 chr12 7163174 7163465 -136622990 + AluSg SINE Alu 1 291 -19 633 203 198 6 chr12 7163489 7163671 -136622784 - MIR SINE MIR -1 261 45 236 121 0 0 chr12 7164262 7164295 -136622160 - MER91 DNA MER1_type -72 68 36 1889 146 0 0 chr12 7164515 7164795 -136621660 + AluJo SINE Alu 33 312 0 2202 108 6 19 chr12 7164942 7165256 -136621199 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7165711 7166005 -136620450 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7169538 7169725 -136616730 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7170071 7170371 -136616084 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7170375 7170485 -136615970 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7170860 7171000 -136615455 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7171659 7171681 -136614774 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7173363 7173515 -136612940 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7176402 7176468 -136609987 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7176560 7176643 -136609812 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7178417 7178719 -136607736 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7178989 7179178 -136607277 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7179305 7179375 -136607080 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7180108 7180234 -136606221 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7180242 7180289 -136606166 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7180563 7180699 -136605756 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7180894 7181251 -136605204 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7181235 7181955 -136604500 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7182061 7182192 -136604263 - AluSg/x SINE Alu -16 294 164 1116 113 0 7 chr12 7182251 7182402 -136604053 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7182548 7182855 -136603600 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7182932 7183030 -136603425 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7183623 7183866 -136602589 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7183898 7183990 -136602465 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7184129 7184257 -136602198 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7184279 7184521 -136601934 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7184521 7184817 -136601638 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7184817 7185022 -136601433 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7185035 7185088 -136601367 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7185088 7185270 -136601185 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7185291 7185554 -136600901 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7185554 7185855 -136600600 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7185855 7185912 -136600543 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7185919 7186230 -136600225 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7186232 7186526 -136599929 - AluSq SINE Alu -16 297 1 2271 109 0 6 chr12 7186794 7187106 -136599349 + AluY SINE Alu 1 310 -1 383 140 0 0 chr12 7187115 7187172 -136599283 + AluS SINE Alu 1 57 -251 1303 88 26 5 chr12 7187192 7187385 -136599070 + LTR3b LTR ERVK 304 500 0 1473 178 0 20 chr12 7187386 7187639 -136598816 + AluJb SINE Alu 50 297 -15 643 153 0 0 chr12 7187689 7187800 -136598655 - AluSx SINE Alu -2 307 197 944 76 30 15 chr12 7187800 7187932 -136598523 - AluSx SINE Alu -175 138 5 2425 75 20 7 chr12 7187952 7188258 -136598197 - AluY SINE Alu -1 310 1 1140 106 0 19 chr12 7188258 7188410 -136598045 - AluSq SINE Alu -16 297 147 6830 154 196 20 chr12 7188410 7189851 -136596604 + pTR5 LTR ERV1 743 2437 -1 540 152 0 50 chr12 7189851 7189872 -136596583 - AluSg SINE Alu -158 152 131 2011 138 14 3 chr12 7189872 7190169 -136596286 - AluSq SINE Alu -13 300 1 540 152 0 50 chr12 7190169 7190246 -136596209 - AluSg SINE Alu -179 131 59 1040 128 27 0 chr12 7190258 7190406 -136596049 - AluSx SINE Alu -159 153 2 653 145 8 0 chr12 7190433 7190550 -136595905 - FLAM_A SINE Alu 0 142 25 405 297 14 0 chr12 7190551 7190696 -136595759 - L1M4 LINE L1 -2449 3697 3551 2073 119 24 0 chr12 7190742 7191035 -136595420 + AluSq SINE Alu 1 300 -13 2426 99 0 0 chr12 7191040 7191343 -136595112 + AluSx SINE Alu 1 303 -9 2337 93 0 7 chr12 7191348 7191650 -136594805 + AluY SINE Alu 1 300 -11 1217 119 11 0 chr12 7191651 7191828 -136594627 + AluSg/x SINE Alu 134 312 0 675 158 9 0 chr12 7191854 7191968 -136594487 - FLAM_C SINE Alu -15 118 4 1371 264 135 17 chr12 7191973 7192062 -136594393 + L2 LINE L2 2453 2530 -783 2142 133 3 0 chr12 7192062 7192356 -136594099 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7192357 7192384 -136594071 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1371 264 135 17 chr12 7192384 7192968 -136593487 + L2 LINE L2 2529 3227 -86 186 250 143 0 chr12 7193106 7193162 -136593293 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7193237 7193419 -136593036 + CT-rich Low_complexity Low_complexity 1 180 0 301 363 112 6 chr12 7193420 7193599 -136592856 - MIR3 SINE MIR -5 203 6 2105 138 0 40 chr12 7193627 7193952 -136592503 - AluSx SINE Alu 0 312 1 2058 133 0 37 chr12 7193959 7194283 -136592172 - AluSx SINE Alu 0 312 1 338 333 82 7 chr12 7194307 7194454 -136592001 + MIR SINE MIR 34 191 -71 2241 109 7 0 chr12 7194468 7194770 -136591685 + AluSg SINE Alu 1 304 -6 619 111 0 0 chr12 7194779 7194878 -136591577 + AluJ/FRAM SINE Alu 214 312 0 2668 46 3 0 chr12 7194988 7195294 -136591161 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7195396 7195470 -136590985 + CT-rich Low_complexity Low_complexity 3 78 0 250 224 188 0 chr12 7195609 7195694 -136590761 + MIR SINE MIR 96 196 -66 198 294 0 0 chr12 7195864 7195915 -136590540 + MIR SINE MIR 95 145 -63 218 197 158 0 chr12 7196039 7196115 -136590340 + MIR SINE MIR 175 262 0 202 261 82 91 chr12 7197593 7197713 -136588742 + MIR3 SINE MIR 14 143 -119 2485 79 0 3 chr12 7197713 7198018 -136588437 - AluY SINE Alu -7 304 1 202 261 82 91 chr12 7198018 7198106 -136588349 + MIR3 SINE MIR 143 230 -32 1069 183 134 15 chr12 7198470 7198594 -136587861 + AluSx SINE Alu 1 109 -193 2040 97 93 0 chr12 7198594 7198873 -136587582 + AluY SINE Alu 1 305 -6 2211 96 0 26 chr12 7198876 7199204 -136587251 + AluSg SINE Alu 1 310 0 1069 183 134 15 chr12 7199204 7199343 -136587112 + AluSx SINE Alu 110 300 -2 211 320 40 30 chr12 7199381 7199481 -136586974 - L2 LINE L2 -61 3252 3152 2469 93 0 0 chr12 7199619 7199921 -136586534 + AluSx SINE Alu 1 302 -10 1550 190 4 7 chr12 7202607 7202881 -136583574 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7203525 7203552 -136582903 + (TC)n Simple_repeat Simple_repeat 2 28 0 1972 119 42 7 chr12 7204623 7204909 -136581546 + AluSx SINE Alu 1 296 -16 2390 75 3 3 chr12 7204909 7205202 -136581253 + AluY SINE Alu 1 293 -18 2378 95 0 0 chr12 7205662 7205958 -136580497 + AluSc SINE Alu 1 296 -13 2034 41 0 12 chr12 7206071 7206313 -136580142 + AluY SINE Alu 63 301 -10 3144 185 31 52 chr12 7206316 7207078 -136579377 + LTR5 LTR ERVK 224 969 0 896 126 81 17 chr12 7207296 7207470 -136578985 + MER5A DNA MER1_type 2 186 -3 538 186 10 0 chr12 7207623 7207725 -136578730 - FRAM SINE Alu -18 158 56 568 263 154 54 chr12 7208536 7208977 -136577478 + LTR33 LTR ERVL 22 506 -15 670 98 9 53 chr12 7209153 7209378 -136577077 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 2178 113 7 10 chr12 7209395 7209705 -136576750 + AluSx SINE Alu 1 309 -3 232 125 10 77 chr12 7209714 7209809 -136576646 + (TAGA)n Simple_repeat Simple_repeat 2 91 -7 2459 88 0 0 chr12 7209809 7210103 -136576352 + AluSx SINE Alu 1 294 -18 232 125 10 77 chr12 7210103 7210111 -136576344 + (TAGA)n Simple_repeat Simple_repeat 91 98 0 2219 92 28 0 chr12 7210116 7210400 -136576055 + AluSx SINE Alu 3 294 -18 648 41 41 33 chr12 7210400 7210522 -136575933 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 404 114 4 15 chr12 7210530 7210775 -136575680 + AluSq SINE Alu 2 293 -19 572 0 15 0 chr12 7210775 7210843 -136575612 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 231 88 0 0 chr12 7211490 7211524 -136574931 + (TC)n Simple_repeat Simple_repeat 1 34 0 1874 153 7 3 chr12 7212594 7212882 -136573573 - AluJb SINE Alu -23 289 1 239 163 0 0 chr12 7212894 7212937 -136573518 - L2 LINE L2 -5 3308 3266 2223 125 0 0 chr12 7212938 7213243 -136573212 + AluSx SINE Alu 1 305 -7 229 312 14 36 chr12 7214311 7214449 -136572006 + T-rich Low_complexity Low_complexity 4 138 0 244 277 59 30 chr12 7214568 7214669 -136571786 - L2 LINE L2 -26 3246 3143 670 300 22 48 chr12 7215456 7215869 -136570586 + L2 LINE L2 2246 2647 -667 1056 195 0 0 chr12 7215939 7216113 -136570342 + AluJb SINE Alu 137 310 -2 638 184 137 12 chr12 7216120 7216288 -136570167 - Charlie1 DNA MER1_type -995 1766 1578 2085 108 31 3 chr12 7216323 7216609 -136569846 - AluSp SINE Alu -19 294 1 1086 244 137 57 chr12 7217319 7217815 -136568640 - MLT1E LTR MaLR -6 587 1 306 310 0 50 chr12 7217822 7217922 -136568533 + MER5A DNA MER1_type 21 115 -74 283 317 0 39 chr12 7217836 7217940 -136568515 - MER5A DNA MER1_type -23 166 67 * 307 348 65 0 chr12 7218193 7218331 -136568124 - L2 LINE L2 -209 3063 2917 431 165 0 0 chr12 7218445 7218524 -136567931 - AluJ/FRAM SINE Alu -3 309 231 603 234 128 87 chr12 7218730 7219144 -136567311 + L1MDb LINE L1 889 1319 -5224 2291 120 0 10 chr12 7219154 7219463 -136566992 + AluSq SINE Alu 1 306 -7 256 214 114 0 chr12 7219464 7219534 -136566921 + L1MDb LINE L1 1590 1667 -4873 1161 127 6 6 chr12 7219544 7219709 -136566746 + AluSg/x SINE Alu 133 297 -13 1277 267 99 8 chr12 7219709 7220215 -136566240 + L1MDb LINE L1 1672 2223 -4317 2286 101 3 0 chr12 7220226 7220522 -136565933 + AluSq SINE Alu 1 297 -16 1916 164 0 13 chr12 7220533 7220831 -136565624 + AluJb SINE Alu 1 294 -18 228 250 96 0 chr12 7220946 7221050 -136565405 + L1MDb LINE L1 2235 2348 -4192 1002 231 9 14 chr12 7221051 7221267 -136565188 + MER58A DNA MER1_type 2 216 -8 1566 163 0 0 chr12 7221267 7221512 -136564943 + AluSg SINE Alu 1 245 -65 400 156 36 66 chr12 7221516 7221542 -136564913 + L1MDb LINE L1 2342 2367 -4173 2219 77 0 68 chr12 7221542 7221676 -136564779 + AluSc SINE Alu 1 143 -166 2566 28 0 56 chr12 7221676 7221997 -136564458 + AluY SINE Alu 1 303 -8 2219 77 0 68 chr12 7221997 7222185 -136564270 + AluSc SINE Alu 143 301 -8 2510 68 0 0 chr12 7222185 7222492 -136563963 + AluY SINE Alu 1 307 -4 400 156 36 66 chr12 7222492 7222631 -136563824 + L1MDb LINE L1 2365 2503 -4037 2355 86 26 3 chr12 7222644 7222947 -136563508 + AluY SINE Alu 2 311 0 227 152 0 0 chr12 7222997 7223043 -136563412 - Alu SINE Alu 0 303 258 23 33 0 0 chr12 7223189 7223219 -136563236 + AT_rich Low_complexity Low_complexity 1 30 0 2158 110 10 0 chr12 7223230 7223521 -136562934 + AluSc SINE Alu 5 298 -11 2268 129 0 0 chr12 7224792 7225095 -136561360 - AluSx SINE Alu -9 303 1 2229 113 0 26 chr12 7225102 7225413 -136561042 - AluSx SINE Alu -9 303 1 1547 149 108 11 chr12 7227122 7227390 -136559065 - AluJb SINE Alu -18 294 1 307 196 9 103 chr12 7227397 7227504 -136558951 - FLAM_A SINE Alu -8 125 29 1775 147 13 42 chr12 7227579 7227891 -136558564 - AluJb SINE Alu -9 303 1 2206 119 0 0 chr12 7227984 7228278 -136558177 - AluSx SINE Alu -18 294 1 2303 123 0 0 chr12 7228287 7228597 -136557858 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7229210 7229248 -136557207 + T-rich Low_complexity Low_complexity 1 38 0 2134 121 16 22 chr12 7229410 7229724 -136556731 - AluSx SINE Alu 0 312 1 1996 149 3 3 chr12 7230125 7230420 -136556035 + AluSx SINE Alu 1 295 -17 2357 79 0 0 chr12 7230421 7230732 -136555723 + AluY SINE Alu 1 311 0 2362 102 3 0 chr12 7230904 7231199 -136555256 + AluSg SINE Alu 2 297 -13 446 109 0 0 chr12 7231345 7231409 -136555046 - AluS SINE Alu -237 75 12 442 259 70 96 chr12 7231453 7231564 -136554891 + L2 LINE L2 2599 2711 -561 2064 138 3 3 chr12 7231564 7231876 -136554579 + AluSx SINE Alu 1 312 0 442 259 70 96 chr12 7231876 7232211 -136554244 + L2 LINE L2 2711 3039 -233 1122 200 33 9 chr12 7232304 7232519 -136553936 + AluJo SINE Alu 1 220 -92 1093 122 0 0 chr12 7232541 7232688 -136553767 + AluSg/x SINE Alu 155 301 -9 2349 70 0 3 chr12 7232691 7232993 -136553462 + AluY SINE Alu 1 301 -10 538 221 15 29 chr12 7232998 7233134 -136553321 + FLAM_A SINE Alu 4 137 -5 300 304 0 11 chr12 7233179 7233271 -136553184 + L2 LINE L2 3182 3272 0 828 154 0 0 chr12 7233341 7233464 -136552991 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7233464 7233489 -136552966 + AT_rich Low_complexity Low_complexity 1 25 0 2086 124 3 0 chr12 7233489 7233787 -136552668 + AluSx SINE Alu 1 299 -13 200 59 29 0 chr12 7233792 7233826 -136552629 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 192 282 237 15 chr12 7233837 7233968 -136552487 + L2 LINE L2 1833 1992 -1322 1729 119 90 4 chr12 7233978 7234255 -136552200 - AluSq SINE Alu -12 301 1 2249 99 0 0 chr12 7234255 7234558 -136551897 - AluSg SINE Alu -7 303 1 1965 123 0 43 chr12 7234565 7234891 -136551564 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7235290 7235645 -136550810 + L2 LINE L2 2921 3270 -2 2153 109 3 3 chr12 7237008 7237310 -136549145 - AluSp SINE Alu -11 302 1 267 156 234 0 chr12 7237985 7238062 -136548393 + MIR SINE MIR 99 193 -69 661 238 43 5 chr12 7238411 7238596 -136547859 - AluSq SINE Alu 0 313 122 1304 220 14 14 chr12 7238604 7238890 -136547565 - AluSg SINE Alu -14 286 1 1329 221 13 30 chr12 7238893 7239053 -136547402 - AluJo SINE Alu -8 294 140 1943 119 7 4 chr12 7239053 7239331 -136547124 - AluSq SINE Alu -34 279 1 1329 221 13 30 chr12 7239331 7239469 -136546986 - AluJo SINE Alu -162 140 1 2015 103 13 13 chr12 7239592 7239893 -136546562 + AluSg SINE Alu 1 301 -9 2065 87 11 0 chr12 7239911 7240186 -136546269 + AluY SINE Alu 1 278 -33 258 32 0 0 chr12 7240201 7240232 -136546223 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1949 120 9 22 chr12 7240251 7240567 -136545888 + AluSx SINE Alu 1 312 0 2677 164 64 35 chr12 7240609 7241201 -136545254 + pTR5 LTR ERV1 738 1346 -1092 3655 163 109 28 chr12 7241215 7241975 -136544480 + LTR12 LTR ERV1 5 826 0 395 147 73 0 chr12 7241975 7242043 -136544412 + U6 snRNA snRNA 34 106 -1 1202 215 30 44 chr12 7242064 7242201 -136544254 + AluJo SINE Alu 1 138 -174 1943 119 7 4 chr12 7242201 7242479 -136543976 + AluSq SINE Alu 1 279 -34 1202 215 30 44 chr12 7242479 7242639 -136543816 + AluJo SINE Alu 138 294 -18 2198 106 7 0 chr12 7242642 7242943 -136543512 + AluSg SINE Alu 1 303 -7 2089 101 0 0 chr12 7242966 7243275 -136543180 + AluSg SINE Alu 5 313 0 902 147 61 35 chr12 7243278 7243476 -136542979 + AluJo SINE Alu 87 289 -23 1470 177 13 23 chr12 7243481 7243780 -136542675 + AluJo SINE Alu 1 296 -16 1777 166 3 0 chr12 7243783 7244079 -136542376 + AluJb SINE Alu 1 297 -15 298 301 13 46 chr12 7244081 7244245 -136542210 - L1ME3A LINE L1 -257 5909 5760 1143 203 38 31 chr12 7244478 7244739 -136541716 - L2 LINE L2 -621 2693 2431 598 241 91 66 chr12 7244888 7244941 -136541514 - L1ME3A LINE L1 -562 5600 5550 2076 109 0 0 chr12 7244941 7245252 -136541203 - AluSx SINE Alu 0 311 1 598 241 91 66 chr12 7245252 7245500 -136540955 - L1ME3A LINE L1 -612 5550 5310 2292 93 3 0 chr12 7245500 7245811 -136540644 - AluSx SINE Alu 0 312 1 2021 117 3 13 chr12 7245820 7246118 -136540337 - AluSx SINE Alu -17 295 1 598 241 91 66 chr12 7246118 7246312 -136540143 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7246316 7246344 -136540111 + AT_rich Low_complexity Low_complexity 1 28 0 2160 94 0 10 chr12 7246344 7246643 -136539812 - AluSx SINE Alu -16 296 1 1052 113 0 0 chr12 7246644 7246795 -136539660 - AluSq SINE Alu -16 297 147 393 261 0 0 chr12 7246795 7246887 -136539568 + pTR5 LTR ERV1 743 834 -1604 1105 126 12 0 chr12 7247304 7247471 -136538984 - AluJb SINE Alu -16 296 128 248 164 0 55 chr12 7247499 7247554 -136538901 - FLAM_A SINE Alu 0 133 82 368 250 22 0 chr12 7247586 7247678 -136538777 - L2 LINE L2 -41 3231 3138 814 139 0 8 chr12 7247817 7247946 -136538509 - AluJ SINE Alu -182 130 3 424 227 42 50 chr12 7247971 7248090 -136538365 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7249972 7250052 -136536403 + CT-rich Low_complexity Low_complexity 4 80 0 193 283 166 35 chr12 7251907 7252052 -136534403 - MIR SINE MIR -78 184 21 215 179 0 0 chr12 7252117 7252156 -136534299 + A-rich Low_complexity Low_complexity 4 42 0 233 288 45 0 chr12 7252771 7252837 -136533618 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7254304 7254326 -136532129 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7254445 7254476 -136531979 + GC_rich Low_complexity Low_complexity 1 31 0 4334 229 16 17 chr12 7255832 7257043 -136529412 + L1M4 LINE L1 3479 4690 -2875 1697 202 61 3 chr12 7257226 7257617 -136528838 - L1 LINE L1 -885 6680 6267 3788 60 10 4 chr12 7257620 7258121 -136528334 - L1MA1 LINE L1 -191 6111 5608 1310 199 17 20 chr12 7258126 7258427 -136528028 - L1 LINE L1 -1302 6263 5964 1307 115 5 29 chr12 7258544 7258753 -136527702 - L1PA13 LINE L1 -72 6091 5888 2934 234 24 36 chr12 7258755 7260020 -136526435 - L1 LINE L1 -4177 3389 2097 227 287 149 0 chr12 7260558 7260652 -136525803 + MER5A DNA MER1_type 9 116 -73 898 204 9 42 chr12 7260652 7260868 -136525587 + AluJo SINE Alu 85 293 -19 387 200 0 0 chr12 7263467 7263547 -136522908 - L1MA8 LINE L1 -1 6290 6211 183 326 90 22 chr12 7265064 7265153 -136521302 - MIR SINE MIR -108 154 60 841 246 21 38 chr12 7266101 7266337 -136520118 + MIR SINE MIR 19 250 -12 509 333 65 13 chr12 7266585 7266816 -136519639 + MIR SINE MIR 19 261 -1 286 230 103 0 chr12 7267555 7267642 -136518813 - MER5A DNA MER1_type -85 104 9 2290 86 0 0 chr12 7268863 7269164 -136517291 - AluY SINE Alu -10 301 1 2578 225 87 42 chr12 7269164 7269994 -136516461 + L1M4 LINE L1 4902 5768 -1797 1090 143 74 18 chr12 7270488 7270705 -136515750 + L1MB8 LINE L1 5935 6163 -15 451 167 0 105 chr12 7270955 7271069 -136515386 - AluY SINE Alu -5 306 205 234 184 0 0 chr12 7271580 7271618 -136514837 - L1M3 LINE L1 -673 5661 5624 1501 164 70 64 chr12 7271950 7272390 -136514065 - L1MB4 LINE L1 -2 6178 5736 325 239 34 29 chr12 7272703 7272826 -136513629 + MLT1L LTR MaLR 160 284 -304 302 243 56 19 chr12 7273047 7273154 -136513301 - L1MC4 LINE L1 -16 8026 7916 560 169 16 24 chr12 7277028 7277152 -136509303 - MER5A DNA MER1_type -66 123 1 923 120 103 40 chr12 7278160 7278366 -136508089 - MSTA LTR MaLR 0 428 180 449 228 28 107 chr12 7279093 7279308 -136507147 - MLT1J LTR MaLR -202 309 112 266 303 129 34 chr12 7279623 7279980 -136506475 - L1ME LINE L1 -239 5882 5492 334 268 18 18 chr12 7281002 7281114 -136505341 - L1ME LINE L1 -2962 3184 3073 248 268 14 14 chr12 7281115 7281186 -136505269 + CT-rich Low_complexity Low_complexity 3 73 0 1164 74 0 0 chr12 7481332 7481480 -136304975 + AluSg/x SINE Alu 159 306 -6 589 194 149 11 chr12 7481489 7481664 -136304791 + Charlie1 DNA MER1_type 1578 1776 -985 1010 193 0 0 chr12 7481685 7481861 -136304594 - AluJb SINE Alu 0 312 137 716 300 22 48 chr12 7481931 7482344 -136304111 - L2 LINE L2 -667 2647 2246 256 277 59 30 chr12 7483131 7483232 -136303223 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7483351 7483489 -136302966 + A-rich Low_complexity Low_complexity 4 140 0 2078 128 0 0 chr12 7484557 7484862 -136301593 - AluSx SINE Alu -7 305 1 234 163 0 0 chr12 7484863 7484906 -136301549 + L2 LINE L2 3266 3308 -5 1758 153 7 3 chr12 7484918 7485206 -136301249 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7486276 7486310 -136300145 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7486957 7487021 -136299434 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 439 103 0 0 chr12 7487021 7487079 -136299376 - AluSq SINE Alu -17 294 237 1177 117 6 17 chr12 7487088 7487268 -136299187 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7487275 7487409 -136299046 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2088 92 28 0 chr12 7487409 7487693 -136298762 - AluSx SINE Alu -18 294 3 227 147 10 59 chr12 7487698 7487704 -136298751 + (TCTA)n Simple_repeat Simple_repeat 2 7 -91 2313 91 0 0 chr12 7487704 7488000 -136298455 - AluSx SINE Alu -16 296 1 227 147 10 59 chr12 7488000 7488095 -136298360 + (TCTA)n Simple_repeat Simple_repeat 7 98 0 2072 112 6 10 chr12 7488112 7488425 -136298030 - AluSx SINE Alu 0 312 1 312 304 93 31 chr12 7488430 7488624 -136297831 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7488626 7488671 -136297784 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 613 263 154 54 chr12 7488847 7489288 -136297167 - LTR33 LTR ERVL -15 506 22 581 186 10 0 chr12 7490099 7490201 -136296254 + FRAM SINE Alu 56 158 -18 976 126 81 17 chr12 7490354 7490528 -136295927 - MER5A DNA MER1_type -3 186 2 2976 182 31 52 chr12 7490746 7491508 -136294947 - LTR5 LTR ERVK 0 969 224 2298 51 0 10 chr12 7491511 7491803 -136294652 - AluY SINE Alu -10 301 13 1178 171 14 0 chr12 7491807 7492024 -136294431 - LTR5 LTR ERVK -749 220 1 2838 142 139 42 chr12 7492462 7492876 -136293579 - MER51D LTR ERV1 0 657 166 1834 109 0 0 chr12 7492876 7493124 -136293331 - AluSx SINE Alu -64 248 1 2838 142 139 42 chr12 7493124 7493308 -136293147 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7494008 7494029 -136292426 + AT_rich Low_complexity Low_complexity 1 21 0 784 177 0 35 chr12 7494126 7494258 -136292197 + FLAM_C SINE Alu 7 135 -177 1865 158 0 0 chr12 7494258 7494549 -136291906 - AluJb SINE Alu -21 291 1 22 0 0 0 chr12 7494557 7494579 -136291876 + AT_rich Low_complexity Low_complexity 1 22 0 2041 128 3 0 chr12 7494579 7494875 -136291580 + AluSx SINE Alu 1 297 -15 2152 110 0 0 chr12 7494903 7495203 -136291252 - AluY SINE Alu -11 300 1 2083 131 0 3 chr12 7495211 7495517 -136290938 - AluSx SINE Alu -7 305 1 501 255 55 28 chr12 7495517 7495661 -136290794 - L1ME4a LINE L1 -1 6120 5965 1742 169 52 0 chr12 7495661 7495951 -136290504 - AluJb SINE Alu -7 305 1 501 255 55 28 chr12 7495951 7496061 -136290394 - L1ME4a LINE L1 -156 5965 5859 2003 105 14 10 chr12 7496082 7496376 -136290079 - AluSc SINE Alu -14 295 1 2034 137 7 0 chr12 7496492 7496792 -136289663 - AluSx SINE Alu -10 302 1 2140 91 0 3 chr12 7496846 7497173 -136289282 + AluY SINE Alu 1 326 0 2029 114 0 7 chr12 7497173 7497505 -136288950 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7497506 7497536 -136288919 + (CA)n Simple_repeat Simple_repeat 1 30 0 2127 206 12 67 chr12 7497555 7497934 -136288521 + L1MD1 LINE L1 4019 4417 -1729 1883 145 3 43 chr12 7497934 7498078 -136288377 + AluJo SINE Alu 1 149 -163 2375 77 0 0 chr12 7498078 7498378 -136288077 + AluY SINE Alu 1 300 -11 1883 145 3 43 chr12 7498378 7498558 -136287897 + AluJo SINE Alu 149 312 0 2127 206 12 67 chr12 7498558 7498624 -136287831 + L1MD1 LINE L1 4417 4485 -1661 2114 127 7 0 chr12 7498624 7498931 -136287524 + AluSx SINE Alu 1 309 -3 2127 206 12 67 chr12 7498931 7499126 -136287329 + L1MD1 LINE L1 4485 4625 -1521 894 190 0 62 chr12 7499127 7499322 -136287133 + AluJo SINE Alu 125 307 -5 836 143 0 0 chr12 7499360 7499493 -136286962 + AluJb SINE Alu 1 133 -179 291 54 0 0 chr12 7499496 7499533 -136286922 + (CA)n Simple_repeat Simple_repeat 2 38 0 306 239 9 119 chr12 7499535 7499644 -136286811 - L1MC4 LINE L1 -1342 6700 6604 301 135 0 0 chr12 7499646 7499698 -136286757 - Alu SINE Alu 0 300 249 694 201 47 0 chr12 7499698 7499847 -136286608 + AluSg/x SINE Alu 152 307 -5 4927 152 67 8 chr12 7499853 7500229 -136286226 + L1MD1 LINE L1 5209 5561 -681 2571 42 0 0 chr12 7500229 7500538 -136285917 + AluY SINE Alu 1 309 -2 4927 152 67 8 chr12 7500538 7501142 -136285313 + L1MD1 LINE L1 5561 6239 -3 2180 112 3 0 chr12 7501143 7501447 -136285008 + AluSx SINE Alu 2 306 -6 2237 94 10 0 chr12 7501516 7501824 -136284631 + AluY SINE Alu 1 311 0 416 307 76 69 chr12 7501909 7502394 -136284061 - L1ME4a LINE L1 -230 5891 5310 1861 144 0 10 chr12 7502554 7502852 -136283603 + AluJb SINE Alu 1 295 -17 2281 87 0 0 chr12 7503232 7503530 -136282925 - AluSx SINE Alu -11 301 4 279 367 106 27 chr12 7503710 7503966 -136282489 - L2 LINE L2 -936 2378 2103 21 0 0 0 chr12 7504782 7504803 -136281652 + AT_rich Low_complexity Low_complexity 1 21 0 1322 156 0 59 chr12 7504805 7504824 -136281631 - AluJo SINE Alu 0 312 293 2241 76 3 58 chr12 7504824 7505154 -136281301 - AluSx SINE Alu 0 312 1 1322 156 0 59 chr12 7505154 7505390 -136281065 - AluJo SINE Alu -19 293 72 1548 159 8 0 chr12 7505461 7505712 -136280743 + AluSx SINE Alu 1 253 -59 2186 100 3 0 chr12 7505741 7506040 -136280415 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7506115 7506152 -136280303 + (TG)n Simple_repeat Simple_repeat 2 38 0 600 146 64 9 chr12 7506152 7506254 -136280201 - AluSg/x SINE Alu -25 284 174 990 166 6 0 chr12 7506256 7506413 -136280042 - FRAM SINE Alu -7 159 2 1296 207 79 18 chr12 7506417 7506697 -136279758 - AluJo SINE Alu -5 297 1 556 287 47 19 chr12 7506799 7507081 -136279374 - L1MC4a LINE L1 -277 5897 5521 430 285 15 44 chr12 7507104 7507241 -136279214 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7507895 7507949 -136278506 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 733 230 83 44 chr12 7508862 7509066 -136277389 + MIR SINE MIR 51 262 0 224 297 117 0 chr12 7509955 7510066 -136276389 + MIR SINE MIR 23 146 -62 198 290 81 0 chr12 7510170 7510232 -136276223 - MIR SINE MIR 0 262 196 328 266 0 0 chr12 7510263 7510354 -136276101 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7510999 7511135 -136275320 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7511151 7511307 -136275148 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7511350 7511529 -136274926 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7512269 7512337 -136274118 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7512339 7512518 -136273937 + GA-rich Low_complexity Low_complexity 3 176 0 213 318 37 9 chr12 7513044 7513151 -136273304 - MIR SINE MIR -67 141 32 278 250 122 73 chr12 7513287 7513468 -136272987 - MIR SINE MIR -22 186 19 369 0 0 0 chr12 7514159 7514200 -136272255 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7514199 7514221 -136272234 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7515094 7515148 -136271307 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7515452 7515555 -136270900 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7516056 7516095 -136270360 + CT-rich Low_complexity Low_complexity 2 41 0 219 324 124 14 chr12 7516581 7516726 -136269729 + L3b LINE CR1 1422 1582 -1 499 250 42 0 chr12 7521175 7521343 -136265112 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7521629 7521742 -136264713 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7521800 7521826 -136264629 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7522181 7522203 -136264252 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7524938 7524983 -136261472 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 255 115 11 chr12 7525393 7525546 -136260909 + MIR SINE MIR 3 177 -69 805 193 21 101 chr12 7525670 7525908 -136260547 - MER20 DNA MER1_type 0 219 1 2255 93 0 6 chr12 7525934 7526245 -136260210 - AluSx SINE Alu -3 309 1 2023 87 0 4 chr12 7526271 7526546 -136259909 + AluSg SINE Alu 37 310 0 587 281 15 39 chr12 7526553 7526756 -136259699 + MIR SINE MIR 61 258 -4 394 306 93 32 chr12 7527820 7527995 -136258460 - L2 LINE L2 -6 3266 3103 2264 86 0 7 chr12 7527995 7528297 -136258158 + AluSp SINE Alu 1 300 -13 394 306 93 32 chr12 7528297 7528432 -136258023 - L2 LINE L2 -169 3103 2937 757 177 13 13 chr12 7528471 7528629 -136257826 + MIR SINE MIR 61 218 -44 2060 109 3 7 chr12 7528642 7528936 -136257519 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7528941 7528973 -136257482 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7529290 7529591 -136256864 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7531745 7531890 -136254565 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7532675 7532703 -136253752 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7534235 7534256 -136252199 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7535088 7535161 -136251294 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7535290 7535417 -136251038 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7535441 7535607 -136250848 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7535608 7535737 -136250718 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7535925 7536127 -136250328 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7537435 7537748 -136248707 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7537759 7538062 -136248393 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7538144 7538563 -136247892 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7539619 7539755 -136246700 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7539955 7540080 -136246375 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7540982 7541223 -136245232 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7541273 7541408 -136245047 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7541409 7541718 -136244737 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7541719 7542118 -136244337 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7543346 7543503 -136242952 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7543503 7543533 -136242922 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7543533 7543657 -136242798 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7547829 7548106 -136238349 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7548582 7548699 -136237756 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7550345 7550645 -136235810 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7551211 7551532 -136234923 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7551544 7551658 -136234797 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7552078 7552214 -136234241 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7552987 7553296 -136233159 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7555476 7555585 -136230870 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7556225 7556363 -136230092 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7557749 7558040 -136228415 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7558774 7558904 -136227551 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7558906 7559083 -136227372 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7560731 7560824 -136225631 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7561048 7561074 -136225381 + GC_rich Low_complexity Low_complexity 1 26 0 302 261 99 21 chr12 7563192 7563313 -136223142 - MIR SINE MIR -60 148 23 201 283 17 17 chr12 7567380 7567440 -136219015 + MIR SINE MIR 45 104 -104 1254 113 9 75 chr12 7567444 7567625 -136218830 - AluJo SINE Alu -10 302 135 2170 117 7 0 chr12 7567625 7567932 -136218523 - AluSq SINE Alu -4 309 1 1254 113 9 75 chr12 7567932 7567963 -136218492 - AluJo SINE Alu -177 135 104 277 129 0 17 chr12 7567963 7568023 -136218432 - Alu SINE Alu -260 42 1 445 257 46 0 chr12 7568029 7568138 -136218317 + MIR SINE MIR 134 247 -15 749 294 37 5 chr12 7568183 7568401 -136218054 + MIR SINE MIR 2 226 -36 2128 99 20 3 chr12 7568666 7568960 -136217495 - AluSg SINE Alu -11 299 1 458 328 93 68 chr12 7569049 7569301 -136217154 - L2 LINE L2 -341 2973 2729 1230 184 3 108 chr12 7569301 7569633 -136216822 - AluY SINE Alu -14 297 1 458 328 93 68 chr12 7569633 7569704 -136216751 - L2 LINE L2 -585 2729 2661 2388 80 3 0 chr12 7569704 7570004 -136216451 + AluSp SINE Alu 1 301 -12 458 328 93 68 chr12 7570004 7570149 -136216306 - L2 LINE L2 -653 2661 2521 2370 93 0 0 chr12 7570149 7570459 -136215996 + AluSx SINE Alu 1 310 -2 458 328 93 68 chr12 7570459 7570801 -136215654 - L2 LINE L2 -793 2521 2140 1263 122 102 86 chr12 7571029 7571162 -136215293 + AluSg1 SINE Alu 1 130 -179 1977 94 54 27 chr12 7571162 7571460 -136214995 + AluSx SINE Alu 1 306 -6 1594 81 0 0 chr12 7571462 7571660 -136214795 + AluSx SINE Alu 1 198 -114 1263 122 102 86 chr12 7571660 7571780 -136214675 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7571780 7571804 -136214651 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1263 122 102 86 chr12 7571804 7571850 -136214605 + AluSg1 SINE Alu 265 309 0 2112 82 0 0 chr12 7571853 7572121 -136214334 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7572186 7572242 -136214213 + (TA)n Simple_repeat Simple_repeat 1 56 0 1878 119 20 3 chr12 7572278 7572572 -136213883 + L1PB1 LINE L1 5853 6151 0 1782 147 14 7 chr12 7572688 7572981 -136213474 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7573113 7573145 -136213310 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2193 96 0 10 chr12 7573166 7573467 -136212988 + AluSx SINE Alu 1 298 -14 36 23 0 0 chr12 7573561 7573604 -136212851 + AT_rich Low_complexity Low_complexity 1 43 0 2316 66 0 26 chr12 7573604 7573909 -136212546 + AluY SINE Alu 1 297 -14 706 183 0 9 chr12 7573909 7574024 -136212431 - FLAM_A SINE Alu -15 118 5 1515 154 108 7 chr12 7574024 7574303 -136212152 - AluJo SINE Alu -5 307 1 1686 166 3 22 chr12 7574304 7574617 -136211838 - AluJb SINE Alu -5 307 1 633 244 74 33 chr12 7574658 7574776 -136211679 - L1ME3 LINE L1 -1 6161 6049 1605 149 52 17 chr12 7574776 7575064 -136211391 + AluJo SINE Alu 1 298 -14 2520 21 0 0 chr12 7575064 7575387 -136211068 + AluY SINE Alu 1 323 0 633 244 74 33 chr12 7575387 7575508 -136210947 - L1ME3 LINE L1 -112 6050 5910 666 203 182 0 chr12 7575517 7575660 -136210795 + FRAM SINE Alu 1 40 0 497 234 110 48 chr12 7575664 7575808 -136210647 - L1ME3 LINE L1 -258 5912 5748 2010 134 7 0 chr12 7575808 7576098 -136210357 - AluSx SINE Alu -20 292 1 497 234 110 48 chr12 7576098 7576180 -136210275 - L1ME3 LINE L1 -422 5748 5672 356 127 0 0 chr12 7576263 7576318 -136210137 + MER101 LTR ERV1 403 457 -17 1131 194 23 81 chr12 7576318 7576432 -136210023 + AluJo SINE Alu 21 140 -172 2101 76 4 0 chr12 7576432 7576696 -136209759 - AluSp SINE Alu -48 265 1 1131 194 23 81 chr12 7576696 7576891 -136209564 + AluJo SINE Alu 140 312 0 287 223 12 56 chr12 7576908 7577015 -136209440 - L1ME3 LINE L1 -470 5700 5598 276 270 10 40 chr12 7578138 7578238 -136208217 - L2 LINE L2 -967 2347 2251 2169 92 7 0 chr12 7578696 7578989 -136207466 - AluSg SINE Alu -15 295 1 7902 58 7 0 chr12 7579201 7580163 -136206292 - LTR5 LTR ERVK 0 969 1 249 108 0 0 chr12 7580191 7580228 -136206227 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 1938 143 3 10 chr12 7580231 7580545 -136205910 + AluSx SINE Alu 1 312 0 657 240 40 23 chr12 7580741 7580916 -136205539 - FRAM SINE Alu 0 176 1 342 329 53 74 chr12 7580919 7581028 -136205427 - Tigger7 DNA MER2_type -808 1679 1569 1960 121 3 58 chr12 7581028 7581358 -136205097 + AluSx SINE Alu 1 312 0 342 329 53 74 chr12 7581358 7581426 -136205029 - Tigger7 DNA MER2_type -918 1569 1501 1559 160 56 4 chr12 7581426 7581730 -136204725 - AluJb SINE Alu 0 318 1 342 329 53 74 chr12 7581730 7582128 -136204327 - Tigger7 DNA MER2_type -986 1501 1113 1795 131 31 0 chr12 7582128 7582418 -136204037 - AluSx SINE Alu -8 304 6 342 329 53 74 chr12 7582418 7582447 -136204008 - Tigger7 DNA MER2_type -1374 1113 1085 2103 106 7 0 chr12 7582684 7582976 -136203479 - AluSg SINE Alu -16 294 1 789 196 0 72 chr12 7583227 7583436 -136203019 - AluJo SINE Alu -1 311 118 2318 93 0 0 chr12 7583458 7583768 -136202687 - AluSq SINE Alu -3 310 1 332 315 161 0 chr12 7584211 7584341 -136202114 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7584414 7584503 -136201952 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 866 173 18 30 chr12 7585149 7585317 -136201138 + FRAM SINE Alu 1 164 -12 2087 114 10 0 chr12 7585394 7585702 -136200753 - AluSx SINE Alu -1 311 1 956 176 0 0 chr12 7585901 7586060 -136200395 + AluJb SINE Alu 137 295 -17 280 233 33 0 chr12 7586061 7586121 -136200334 - L2 LINE L2 -18 3295 3234 1820 151 23 7 chr12 7586146 7586451 -136200004 + AluJo SINE Alu 1 310 -2 196 246 18 18 chr12 7586479 7586536 -136199919 - L2 LINE L2 -848 2466 2410 2060 113 7 0 chr12 7586545 7586837 -136199618 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7586856 7586889 -136199566 + (CA)n Simple_repeat Simple_repeat 2 34 0 2142 121 0 6 chr12 7586985 7587299 -136199156 + AluSx SINE Alu 1 312 0 1990 164 44 19 chr12 7587657 7588023 -136198432 + THE1C LTR MaLR 1 375 0 1679 178 28 0 chr12 7588324 7588446 -136198009 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7588446 7588471 -136197984 + (CA)n Simple_repeat Simple_repeat 2 26 0 1679 178 28 0 chr12 7588471 7588635 -136197820 + AluJb SINE Alu 118 295 -17 2357 74 3 16 chr12 7588641 7588953 -136197502 + AluSq SINE Alu 1 308 -5 1368 180 24 45 chr12 7588953 7589242 -136197213 + AluJo SINE Alu 1 283 -29 1596 143 66 30 chr12 7589242 7589357 -136197098 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7589357 7589405 -136197050 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1596 143 66 30 chr12 7589405 7589590 -136196865 + AluSx SINE Alu 110 312 0 271 274 35 0 chr12 7589622 7589735 -136196720 + L1M4 LINE L1 4735 4851 -1295 451 312 138 18 chr12 7589745 7590078 -136196377 + L1M4 LINE L1 4877 5249 -897 2568 158 164 8 chr12 7590094 7590583 -136195872 + MLT1F1 LTR MaLR 1 565 -2 1332 146 23 151 chr12 7590596 7590946 -136195509 + AluYb8 SINE Alu 1 305 -3 2269 91 0 0 chr12 7591330 7591627 -136194828 + AluSc SINE Alu 1 297 -12 2289 100 0 0 chr12 7591631 7591932 -136194523 + AluSq SINE Alu 1 301 -12 1855 151 7 10 chr12 7591971 7592139 -136194316 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7592139 7592176 -136194279 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1757 108 17 45 chr12 7592176 7592464 -136193991 - AluSg SINE Alu -30 280 1 1855 151 7 10 chr12 7592464 7592598 -136193857 - AluSx SINE Alu -174 138 1 1497 153 0 34 chr12 7592679 7592947 -136193508 + AluJo SINE Alu 2 260 -52 226 244 0 0 chr12 7592982 7593027 -136193428 + MER5A DNA MER1_type 9 53 -136 650 177 0 9 chr12 7593203 7593316 -136193139 + FRAM SINE Alu 1 104 -72 1831 210 78 12 chr12 7593320 7593744 -136192711 + MER66A LTR ERV1 27 478 0 1607 168 82 25 chr12 7593776 7593870 -136192585 - MER51A LTR ERV1 0 634 547 1521 86 70 45 chr12 7593870 7594114 -136192341 - AluSg SINE Alu -6 304 55 1607 168 82 25 chr12 7594114 7594425 -136192030 - MER51A LTR ERV1 -87 547 225 404 73 0 0 chr12 7594429 7594484 -136191971 - MER51A LTR ERV1 -578 56 2 262 208 0 0 chr12 7594485 7594533 -136191922 + FLAM_A SINE Alu 85 132 -1 2467 48 0 22 chr12 7594536 7594852 -136191603 + AluY SINE Alu 3 311 0 2130 113 0 0 chr12 7595018 7595319 -136191136 - AluSx SINE Alu -11 301 1 1156 118 0 0 chr12 7595319 7595480 -136190975 - AluSg/x SINE Alu -18 292 132 2173 78 20 3 chr12 7595480 7595774 -136190681 - AluSq SINE Alu -14 299 1 189 301 0 24 chr12 7596116 7596199 -136190256 + MIR SINE MIR 182 262 0 1993 144 0 6 chr12 7596342 7596655 -136189800 + AluJo SINE Alu 1 311 -1 570 332 18 9 chr12 7596930 7597147 -136189308 - MIR SINE MIR -21 241 23 314 231 128 13 chr12 7597403 7597538 -136188917 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7599026 7599089 -136187366 + GA-rich Low_complexity Low_complexity 2 64 0 730 284 62 37 chr12 7600104 7600425 -136186030 - L2 LINE L2 0 3313 2985 213 260 27 14 chr12 7600804 7600877 -136185578 + MIR3 SINE MIR 6 79 -129 2490 176 97 36 chr12 7601062 7601586 -136184869 - MER21A LTR ERV1 0 931 376 973 149 63 115 chr12 7601592 7601656 -136184799 - MER21A LTR ERV1 -668 263 197 2306 92 0 0 chr12 7601656 7601962 -136184493 + AluSx SINE Alu 1 306 -6 1612 65 0 28 chr12 7601971 7602185 -136184270 + AluY SINE Alu 94 301 -10 973 149 63 115 chr12 7602185 7602379 -136184076 - MER21A LTR ERV1 -742 189 9 314 278 46 53 chr12 7602379 7602530 -136183925 + L1MCa LINE L1 1942 2091 -4335 * 389 292 61 37 chr12 7602395 7602913 -136183542 - L1MC5 LINE L1 -182 8059 1970 356 347 0 16 chr12 7603559 7603643 -136182812 - L2 LINE L2 -1 3271 3188 1547 146 38 89 chr12 7603643 7603768 -136182687 + AluJo SINE Alu 1 131 -181 1773 168 3 13 chr12 7603768 7604083 -136182372 + AluJb SINE Alu 1 312 0 1547 146 38 89 chr12 7604083 7604272 -136182183 + AluJo SINE Alu 131 299 -13 356 347 0 16 chr12 7604272 7604311 -136182144 - L2 LINE L2 -84 3188 3150 261 228 215 0 chr12 7604867 7604946 -136181509 + MER20B DNA MER1_type 68 163 -620 1726 159 20 7 chr12 7605069 7605364 -136181091 + AluJo SINE Alu 3 301 -11 948 136 28 40 chr12 7605533 7605709 -136180746 - AluJo SINE Alu -54 258 85 2250 101 0 0 chr12 7606897 7607204 -136179251 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7607900 7607981 -136178474 + (CCG)n Simple_repeat Simple_repeat 1 79 0 222 333 11 11 chr12 7610564 7610651 -136175804 + L3b LINE CR1 1303 1389 -194 2269 42 42 3 chr12 7611695 7611980 -136174475 - AluY SINE Alu -15 296 1 2428 66 0 0 chr12 7612041 7612345 -136174110 + AluSx SINE Alu 1 304 -8 305 233 214 53 chr12 7612505 7612711 -136173744 + MIR SINE MIR 3 241 -21 534 306 31 0 chr12 7613462 7613684 -136172771 + L3b LINE CR1 1190 1418 -165 2290 93 3 3 chr12 7613728 7614040 -136172415 - AluSp SINE Alu -1 312 1 957 119 0 7 chr12 7614058 7614201 -136172254 - FLAM_C SINE Alu -1 142 1 1244 118 165 9 chr12 7614207 7614419 -136172036 - AluSx SINE Alu -67 245 1 1671 181 14 0 chr12 7614453 7614746 -136171709 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7616629 7616659 -136169796 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7618441 7618483 -136167972 + (TG)n Simple_repeat Simple_repeat 1 42 0 2110 85 20 0 chr12 7619815 7620109 -136166346 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7620920 7621071 -136165384 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7621078 7621119 -136165336 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7621280 7621498 -136164957 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7621559 7621598 -136164857 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7621734 7621763 -136164692 + GC_rich Low_complexity Low_complexity 1 29 0 499 232 120 14 chr12 7623391 7623533 -136162922 + MIR3 SINE MIR 20 176 -32 2235 45 0 21 chr12 7623854 7624141 -136162314 + AluY SINE Alu 1 281 -30 271 0 0 0 chr12 7624141 7624171 -136162284 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 198 0 0 0 chr12 7624750 7624772 -136161683 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7624772 7625086 -136161369 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7625092 7625404 -136161051 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7626298 7626535 -136159920 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7626551 7626830 -136159625 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7628221 7628528 -136157927 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7629761 7629807 -136156648 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7630057 7630116 -136156339 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7631463 7631493 -136154962 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7632841 7633144 -136153311 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7633328 7633630 -136152825 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7633639 7633908 -136152547 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7634518 7634637 -136151818 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7635566 7635589 -136150866 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7635932 7636194 -136150261 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7636364 7636660 -136149795 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7637157 7637219 -136149236 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7638192 7638535 -136147920 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7640522 7640728 -136145727 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7640728 7641033 -136145422 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7641033 7641270 -136145185 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7641354 7641473 -136144982 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7641475 7641593 -136144862 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7641593 7641623 -136144832 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7641623 7641850 -136144605 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7641851 7641967 -136144488 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7641999 7642313 -136144142 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7642769 7642989 -136143466 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7643010 7643086 -136143369 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7643152 7643420 -136143035 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7643423 7643499 -136142956 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7643522 7643664 -136142791 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7644096 7644345 -136142110 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7645791 7645907 -136140548 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7646363 7646522 -136139933 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7647784 7647874 -136138581 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7647903 7648061 -136138394 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7650427 7650778 -136135677 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7650792 7650870 -136135585 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7652126 7652239 -136134216 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7653907 7654026 -136132429 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7654920 7655133 -136131322 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7660083 7660388 -136126067 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7661364 7661428 -136125027 + G-rich Low_complexity Low_complexity 4 63 0 200 259 69 0 chr12 7662692 7662750 -136123705 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7662958 7663258 -136123197 + AluSx SINE Alu 1 301 -11 2285 87 0 6 chr12 7664604 7664915 -136121540 - AluSx SINE Alu -3 309 1 1105 86 7 0 chr12 7665406 7665558 -136120897 - AluSc SINE Alu -10 299 147 1695 173 13 16 chr12 7666173 7666479 -136119976 - AluJb SINE Alu -7 305 1 1828 159 48 0 chr12 7666518 7666807 -136119648 - AluSx SINE Alu -9 303 1 2208 61 46 0 chr12 7666901 7667181 -136119274 - AluY SINE Alu -18 293 1 706 166 70 0 chr12 7667475 7667623 -136118832 - MER5A DNA MER1_type -17 161 3 2140 100 7 0 chr12 7669782 7670071 -136116384 + AluSx SINE Alu 1 291 -21 195 299 154 0 chr12 7671310 7671427 -136115028 - L2 LINE L2 -43 3229 3095 1732 158 16 41 chr12 7673362 7673678 -136112777 - AluJo SINE Alu 0 312 5 1721 160 7 27 chr12 7673702 7673995 -136112460 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7673996 7674035 -136112420 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 461 105 132 0 chr12 7675458 7675534 -136110921 - AluJb SINE Alu -142 170 85 974 128 0 14 chr12 7675536 7675677 -136110778 - AluJb SINE Alu -173 139 1 192 357 43 0 chr12 7675866 7675936 -136110519 - MIR SINE MIR -102 106 34 24 32 0 0 chr12 7676266 7676297 -136110158 + AT_rich Low_complexity Low_complexity 1 31 0 563 168 19 0 chr12 7676310 7676417 -136110038 - FRAM SINE Alu -1 175 67 822 149 0 43 chr12 7677199 7677340 -136109115 + AluJo SINE Alu 1 135 -177 1992 134 7 7 chr12 7677922 7678220 -136108235 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7678428 7678448 -136108007 + (A)n Simple_repeat Simple_repeat 1 20 0 2414 70 3 16 chr12 7678448 7678762 -136107693 + AluY SINE Alu 1 310 -1 2167 92 3 50 chr12 7678773 7679090 -136107365 + AluSx SINE Alu 6 307 -5 2160 117 13 0 chr12 7679102 7679400 -136107055 + AluSq SINE Alu 1 302 -11 314 243 0 0 chr12 7679400 7679470 -136106985 + Tigger2 DNA MER2_type 2649 2718 0 249 268 0 0 chr12 7679507 7679563 -136106892 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7679871 7679892 -136106563 + AT_rich Low_complexity Low_complexity 1 21 0 2338 61 27 10 chr12 7681114 7681408 -136105047 + AluSp SINE Alu 1 299 -14 2415 32 56 3 chr12 7681583 7681867 -136104588 - AluY SINE Alu -12 299 1 1816 148 0 48 chr12 7682160 7682493 -136103962 + AluJo SINE Alu 1 312 0 2452 69 0 0 chr12 7682497 7682788 -136103667 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7682796 7682836 -136103619 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4574 165 74 42 chr12 7682836 7682912 -136103543 - Charlie1a DNA MER1_type -1355 1406 1334 2137 128 20 0 chr12 7682912 7683216 -136103239 + AluSx SINE Alu 3 312 0 4574 165 74 42 chr12 7683216 7684185 -136102270 - Charlie1a DNA MER1_type -1427 1334 324 1059 133 33 0 chr12 7684187 7684337 -136102118 + AluSx SINE Alu 4 158 -154 1034 161 124 0 chr12 7684393 7684425 -136102030 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7684425 7684455 -136102000 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1034 161 124 0 chr12 7684455 7684615 -136101840 + AluJb SINE Alu 114 303 -9 1483 198 32 18 chr12 7684615 7684898 -136101557 - Charlie1a DNA MER1_type -1159 296 10 1172 167 39 10 chr12 7685040 7685244 -136101211 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7685244 7685278 -136101177 + AT_rich Low_complexity Low_complexity 1 34 0 288 171 0 0 chr12 7685283 7685324 -136101131 + MER2 DNA MER2_type 304 344 -1 2394 151 15 96 chr12 7685347 7685428 -136101027 - L1MB7 LINE L1 -16 6168 6082 2283 92 14 0 chr12 7685428 7685720 -136100735 + AluSc SINE Alu 2 297 -12 2394 151 15 96 chr12 7685720 7686058 -136100397 - L1MB7 LINE L1 -102 6082 5797 819 179 0 0 chr12 7686058 7686181 -136100274 - FLAM_C SINE Alu -10 123 1 2394 151 15 96 chr12 7686181 7686283 -136100172 - L1MB7 LINE L1 -387 5797 5688 768 146 0 0 chr12 7686283 7686393 -136100062 - FLAM_C SINE Alu -20 123 14 460 88 0 100 chr12 7686395 7686475 -136099980 - L1M4 LINE L1 -493 5691 5620 2205 118 0 0 chr12 7686475 7686771 -136099684 - AluSx SINE Alu -10 302 7 1575 161 47 0 chr12 7686771 7687024 -136099431 - AluJb SINE Alu -46 266 1 254 350 97 32 chr12 7687119 7687466 -136098989 + L2 LINE L2 2100 2423 -891 2377 82 0 3 chr12 7687466 7687758 -136098697 + AluSg SINE Alu 5 295 -15 254 350 97 32 chr12 7687758 7687832 -136098623 + L2 LINE L2 2423 2491 -823 195 100 0 0 chr12 7687832 7687862 -136098593 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 254 350 97 32 chr12 7687862 7687973 -136098482 + L2 LINE L2 2491 2668 -646 822 232 103 91 chr12 7688046 7688850 -136097605 + L2 LINE L2 2503 3306 -7 256 264 0 42 chr12 7688887 7688959 -136097496 - L2 LINE L2 -7 3306 3238 542 135 0 11 chr12 7689362 7689451 -136097004 - Charlie2 DNA MER1_type -4 2858 2771 1065 186 0 0 chr12 7689458 7689630 -136096825 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7689649 7689698 -136096757 + (TG)n Simple_repeat Simple_repeat 2 50 0 1777 124 33 40 chr12 7689702 7689850 -136096605 - AluSx SINE Alu -31 281 134 2419 88 3 0 chr12 7689850 7690155 -136096300 - AluSp SINE Alu -7 306 1 1777 124 33 40 chr12 7690155 7690279 -136096176 - AluSx SINE Alu -178 134 11 1748 196 0 0 chr12 7690299 7690585 -136095870 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7690629 7690691 -136095764 - Charlie2a DNA MER1_type -1258 1604 1524 391 306 90 0 chr12 7691103 7691247 -136095208 - MIR3 SINE MIR -35 173 17 2389 92 0 3 chr12 7692183 7692489 -136093966 - AluY SINE Alu -6 305 1 545 117 161 95 chr12 7692662 7692799 -136093656 + MER69 DNA AcHobo 2 147 -2379 395 183 0 0 chr12 7692793 7692864 -136093591 + MER69 DNA AcHobo 2447 2517 -9 * 2401 87 0 0 chr12 7694211 7694509 -136091946 + AluSg SINE Alu 1 298 -12 254 180 0 38 chr12 7694951 7695011 -136091444 - FLAM SINE Alu -9 124 76 2921 16 0 0 chr12 7695123 7695436 -136091019 + AluYb8 SINE Alu 1 313 -5 850 252 52 20 chr12 7695794 7696044 -136090411 - MIR SINE MIR -2 260 3 224 299 31 16 chr12 7696227 7696354 -136090101 + L2 LINE L2 2687 2815 -499 4782 137 46 28 chr12 7696431 7697417 -136089038 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7697487 7697534 -136088921 + AT_rich Low_complexity Low_complexity 1 47 0 1909 133 0 0 chr12 7697738 7698001 -136088454 - AluSx SINE Alu -49 263 1 2317 73 3 26 chr12 7698530 7698833 -136087622 - AluSq SINE Alu -17 296 1 2520 80 0 0 chr12 7698976 7699277 -136087178 - AluSx SINE Alu -11 301 1 1193 123 0 0 chr12 7700089 7700251 -136086204 + AluSg/x SINE Alu 136 297 -13 207 250 19 0 chr12 7700433 7700485 -136085970 + MIR SINE MIR 84 136 -126 2032 109 4 0 chr12 7700577 7700843 -136085612 - AluSx SINE Alu -45 267 1 713 229 47 0 chr12 7700916 7701086 -136085369 - MER5A DNA MER1_type -1 188 11 232 231 46 0 chr12 7701157 7701222 -136085233 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7701781 7701880 -136084575 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7701893 7701918 -136084537 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7701918 7702066 -136084389 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7702328 7702489 -136083966 - FRAM SINE Alu -20 156 1 1614 173 3 63 chr12 7702499 7702817 -136083638 - AluJb SINE Alu -13 299 1 2003 157 3 10 chr12 7702845 7703158 -136083297 + AluJb SINE Alu 1 311 -1 222 280 0 0 chr12 7703252 7703302 -136083153 - L3 LINE CR1 -11 1566 1517 285 318 20 34 chr12 7703865 7704013 -136082442 + MIR SINE MIR 100 245 -17 367 231 13 0 chr12 7704013 7704091 -136082364 - MER5A DNA MER1_type -100 89 11 232 231 46 0 chr12 7704162 7704227 -136082228 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7704786 7704885 -136081570 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7704898 7704923 -136081532 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7704923 7705071 -136081384 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7705333 7705494 -136080961 - FRAM SINE Alu -20 156 1 1658 172 0 63 chr12 7705504 7705823 -136080632 - AluJb SINE Alu -13 299 1 1995 157 3 10 chr12 7705851 7706163 -136080292 + AluJb SINE Alu 1 310 -2 222 280 0 0 chr12 7706257 7706307 -136080148 - L3 LINE CR1 -11 1566 1517 358 315 18 30 chr12 7706870 7707035 -136079420 + MIR SINE MIR 100 262 0 578 298 207 15 chr12 7707417 7708114 -136078341 - L2 LINE L2 0 3272 2431 253 293 116 63 chr12 7708137 7708550 -136077905 + L2 LINE L2 2521 2955 -359 2188 86 6 48 chr12 7709087 7709401 -136077054 + AluSc SINE Alu 1 301 -8 600 178 30 54 chr12 7709410 7709610 -136076845 - MER112 DNA MER1_type 0 260 1 1375 169 92 18 chr12 7710586 7710752 -136075703 - AluJb SINE Alu -15 297 102 2218 125 0 6 chr12 7710752 7711063 -136075392 - AluSx SINE Alu -3 309 1 1375 169 92 18 chr12 7711063 7711169 -136075286 - AluJb SINE Alu -210 102 5 410 328 64 12 chr12 7711808 7711979 -136074476 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7713357 7713380 -136073075 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7713672 7713704 -136072751 + AT_rich Low_complexity Low_complexity 1 32 0 248 246 18 0 chr12 7713840 7713897 -136072558 - L2 LINE L2 -12 3301 3244 224 321 120 11 chr12 7714113 7714297 -136072158 - MIR SINE MIR -40 222 19 1835 153 13 23 chr12 7714567 7714867 -136071588 + AluJb SINE Alu 1 297 -15 1556 85 0 10 chr12 7714879 7715079 -136071376 + AluSq SINE Alu 21 218 -95 1448 148 83 105 chr12 7715081 7715539 -136070916 - LTR7 LTR ERV1 -2 448 1 652 81 0 0 chr12 7715540 7715627 -136070828 + AluSq SINE Alu 215 301 -12 2319 113 0 0 chr12 7715627 7715927 -136070528 + AluSx SINE Alu 1 300 -12 247 163 61 0 chr12 7715937 7715986 -136070469 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7716002 7716049 -136070406 + LTR8A LTR ERV1 34 81 -646 2028 129 14 3 chr12 7716049 7716335 -136070120 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7716335 7716999 -136069456 + LTR8A LTR ERV1 81 727 0 1559 115 3 92 chr12 7716999 7717144 -136069311 + Tigger3(Golem) DNA MER2_type 2618 2724 -305 2322 81 10 10 chr12 7717144 7717442 -136069013 - AluSp SINE Alu -15 298 1 1559 115 3 92 chr12 7717442 7717601 -136068854 + Tigger3(Golem) DNA MER2_type 2724 2895 -134 4132 142 63 8 chr12 7717607 7718274 -136068181 + MER72 LTR ERV1 5 708 -14 3751 168 31 0 chr12 7718274 7718970 -136067485 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7718970 7719102 -136067353 + FLAM_C SINE Alu 1 133 -10 2102 98 9 60 chr12 7719110 7719427 -136067028 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7719443 7719790 -136066665 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7719790 7719885 -136066570 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7719894 7720196 -136066259 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7720210 7720528 -136065927 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7720528 7721622 -136064833 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7721637 7721934 -136064521 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7721938 7722051 -136064404 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7722051 7722406 -136064049 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7722406 7722562 -136063893 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7722607 7722634 -136063821 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7722634 7722926 -136063529 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7722926 7723434 -136063021 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7723434 7723758 -136062697 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7723758 7723784 -136062671 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7723789 7724121 -136062334 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7724160 7724393 -136062062 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7724393 7724693 -136061762 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7724693 7724724 -136061731 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7724725 7726325 -136060130 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7726325 7726525 -136059930 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7726525 7726547 -136059908 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7726991 7727303 -136059152 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7727376 7727415 -136059040 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7727431 7727474 -136058981 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7727582 7727612 -136058843 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7727912 7727942 -136058513 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7728076 7728167 -136058288 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7728168 7728315 -136058140 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7728315 7728533 -136057922 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7728534 7728641 -136057814 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7728650 7730257 -136056198 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7730257 7730323 -136056132 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7730323 7730665 -136055790 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7730665 7730995 -136055460 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7731007 7731179 -136055276 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7731726 7733263 -136053192 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7734103 7734344 -136052111 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7734357 7734528 -136051927 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7734528 7734790 -136051665 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7734790 7734948 -136051507 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7736291 7736427 -136050028 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7736427 7736460 -136049995 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7736461 7736748 -136049707 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7736748 7736979 -136049476 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7737162 7737647 -136048808 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7737647 7737961 -136048494 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7737961 7738172 -136048283 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7739221 7739261 -136047194 - Charlie8 DNA MER1_type -1020 1397 1358 272 200 31 0 chr12 7739338 7739403 -136047052 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7739403 7739702 -136046753 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7739703 7740110 -136046345 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7740110 7740294 -136046161 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7740651 7740777 -136045678 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7741249 7741499 -136044956 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7741570 7741700 -136044755 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7742112 7742435 -136044020 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7742447 7742483 -136043972 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7742483 7742766 -136043689 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7742767 7742921 -136043534 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7742942 7742975 -136043480 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7742996 7743150 -136043305 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7743150 7743460 -136042995 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7743468 7743958 -136042497 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7743958 7744253 -136042202 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7744253 7744379 -136042076 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7744379 7744684 -136041771 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7744684 7748299 -136038156 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7748299 7748610 -136037845 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7748610 7749111 -136037344 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7749111 7749422 -136037033 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7749422 7749735 -136036720 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7749847 7749939 -136036516 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7750344 7750633 -136035822 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7751327 7751635 -136034820 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7751661 7751910 -136034545 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7752154 7752352 -136034103 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7752420 7752800 -136033655 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7752800 7753579 -136032876 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7753579 7753727 -136032728 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7753863 7754119 -136032336 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7754183 7754239 -136032216 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7754242 7754400 -136032055 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7754402 7754677 -136031778 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7756471 7756770 -136029685 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7757764 7757965 -136028490 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7758226 7758515 -136027940 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7758993 7759021 -136027434 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7759027 7759254 -136027201 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7759848 7760153 -136026302 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7760532 7760669 -136025786 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7762446 7762533 -136023922 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7763510 7763682 -136022773 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7765766 7765817 -136020638 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7765840 7766029 -136020426 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7966097 7966237 -135820218 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7966603 7966719 -135819736 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7966795 7966869 -135819586 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7966900 7967332 -135819123 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7967405 7967469 -135818986 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7967488 7967645 -135818810 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7967785 7967972 -135818483 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7968342 7968624 -135817831 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7968637 7968807 -135817648 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7968809 7969245 -135817210 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7969612 7969730 -135816725 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7969916 7970074 -135816381 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7970119 7970345 -135816110 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7970351 7970932 -135815523 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7970937 7971059 -135815396 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7971253 7971396 -135815059 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7971675 7971839 -135814616 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7972451 7972808 -135813647 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7972856 7972938 -135813517 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7972969 7973285 -135813170 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7973380 7979512 -135806943 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7979523 7979868 -135806587 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7979868 7979904 -135806551 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7979904 7980075 -135806380 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7980256 7980566 -135805889 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7980611 7980920 -135805535 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7981192 7981736 -135804719 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7981909 7982215 -135804240 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7982320 7982652 -135803803 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7983246 7983443 -135803012 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7983443 7983756 -135802699 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7983756 7983892 -135802563 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7983892 7983983 -135802472 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7984006 7984027 -135802428 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7984104 7984422 -135802033 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7987849 7987996 -135798459 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7990403 7990593 -135795862 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7993575 7993646 -135792809 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7994189 7994229 -135792226 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7994228 7994255 -135792200 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7994533 7994677 -135791778 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7994691 7994726 -135791729 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7994726 7994750 -135791705 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7994782 7995024 -135791431 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7995036 7995158 -135791297 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7995158 7995291 -135791164 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7995291 7995410 -135791045 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7996036 7996338 -135790117 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7999124 7999165 -135787290 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 8000185 8000491 -135785964 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 8002304 8002347 -135784108 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 8002362 8002458 -135783997 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 8002811 8002863 -135783592 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 8003853 8004355 -135782100 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 8005166 8005559 -135780896 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 8006049 8006224 -135780231 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 8006313 8006428 -135780027 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 8006449 8006643 -135779812 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 8006688 8006938 -135779517 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 8006987 8007236 -135779219 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 8008318 8008438 -135778017 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 8008552 8008659 -135777796 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 8008646 8008879 -135777576 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 8008879 8008991 -135777464 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 8008991 8009355 -135777100 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 8009355 8009378 -135777077 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 8009378 8009504 -135776951 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 8009504 8009686 -135776769 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 8009687 8009834 -135776621 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 8009837 8010166 -135776289 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 8010557 8010670 -135775785 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 8012242 8012266 -135774189 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 8013377 8013536 -135772919 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 8013780 8013807 -135772648 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 8013993 8014579 -135771876 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 8014579 8014894 -135771561 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 8014894 8015476 -135770979 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 8015603 8015857 -135770598 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 8017507 8017660 -135768795 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 8017661 8017686 -135768769 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 8017697 8017791 -135768664 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 8018298 8018498 -135767957 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 8018540 8018633 -135767822 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 8018712 8018902 -135767553 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 8018903 8019207 -135767248 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 8019388 8019506 -135766949 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 8020298 8020344 -135766111 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 8020504 8021111 -135765344 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 8021114 8021211 -135765244 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 8021219 8021380 -135765075 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 8021983 8022313 -135764142 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 8022371 8022506 -135763949 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 8022648 8024892 -135761563 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 8024892 8025191 -135761264 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 8025191 8025689 -135760766 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 8025694 8025962 -135760493 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 8025964 8026023 -135760432 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 8029225 8029316 -135757139 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 8029529 8029581 -135756874 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 8029581 8029891 -135756564 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 8029891 8030076 -135756379 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 8030079 8030366 -135756089 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 8030459 8030701 -135755754 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 8030895 8030917 -135755538 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 8030981 8031250 -135755205 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 8032403 8032538 -135753917 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 8036229 8036254 -135750201 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 8036623 8036653 -135749802 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 8037604 8038042 -135748413 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 8038045 8038180 -135748275 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 8038370 8038728 -135747727 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 8041511 8041643 -135744812 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 8041845 8041900 -135744555 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 8042046 8042208 -135744247 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 8042209 8042507 -135743948 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 8043536 8043576 -135742879 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 8043576 8043605 -135742850 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 8044766 8044905 -135741550 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 8044928 8045004 -135741451 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 8045054 8045351 -135741104 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 8045361 8045769 -135740686 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 8045769 8045793 -135740662 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 8045793 8046954 -135739501 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 8046954 8047254 -135739201 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 8047254 8047555 -135738900 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 8047555 8048141 -135738314 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 8048141 8048598 -135737857 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 8048832 8048937 -135737518 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 8049089 8049211 -135737244 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 8049649 8049706 -135736749 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 8050017 8050128 -135736327 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 8050770 8050926 -135735529 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 8050954 8051159 -135735296 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 8051272 8051380 -135735075 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 8051383 8051731 -135734724 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 8051763 8051838 -135734617 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 8052638 8052979 -135733476 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 8052979 8053547 -135732908 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 8053593 8053907 -135732548 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 8054311 8054610 -135731845 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 8056031 8056181 -135730274 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 8056481 8056774 -135729681 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 8057019 8057138 -135729317 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 8057324 8057376 -135729079 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 8057889 8057909 -135728546 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 8058139 8058269 -135728186 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 8058409 8058607 -135727848 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 8058653 8058682 -135727773 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 8059735 8059790 -135726665 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 8059790 8060316 -135726139 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 8060316 8060576 -135725879 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 8060570 8060630 -135725825 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 8060630 8060707 -135725748 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 8061354 8061379 -135725076 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 8061549 8061692 -135724763 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 8061692 8061977 -135724478 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 8061977 8062151 -135724304 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 8062134 8063595 -135722860 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 8063583 8064151 -135722304 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 8064406 8065147 -135721308 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 8065147 8065662 -135720793 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 8065662 8066259 -135720196 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 8066293 8066454 -135720001 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 8066692 8066830 -135719625 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 8067123 8067657 -135718798 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 8067662 8068074 -135718381 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 8068078 8068157 -135718298 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 8068160 8068293 -135718162 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 8068297 8068384 -135718071 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 8069337 8070441 -135716014 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 8070783 8070881 -135715574 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 8070961 8071227 -135715228 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 8071230 8071321 -135715134 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 8071331 8071453 -135715002 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 8071453 8071500 -135714955 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 8071578 8071855 -135714600 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 8071868 8072332 -135714123 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 8072343 8072396 -135714059 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 8072624 8072958 -135713497 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 8072958 8073263 -135713192 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 8073263 8073314 -135713141 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 8073767 8074118 -135712337 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 8074177 8074487 -135711968 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 8074566 8074867 -135711588 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 8075209 8075711 -135710744 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 8075713 8076414 -135710041 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 8076871 8078035 -135708420 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 8078171 8079671 -135706784 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 8079659 8079730 -135706725 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 8079720 8080007 -135706448 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 8080007 8080336 -135706119 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 8080336 8080361 -135706094 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 8080560 8080611 -135705844 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 8080629 8080684 -135705771 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 8080684 8080969 -135705486 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 8080969 8081222 -135705233 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 8081225 8081412 -135705043 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 8081466 8081495 -135704960 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 8081787 8081908 -135704547 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 8083090 8083149 -135703306 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 8083627 8083711 -135702744 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 8084585 8084616 -135701839 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 8085945 8086199 -135700256 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 8086853 8087032 -135699423 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 8087033 8087331 -135699124 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 8088067 8088376 -135698079 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 8088756 8088904 -135697551 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 8089812 8089980 -135696475 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 8089995 8090231 -135696224 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 8090236 8090430 -135696025 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 8090444 8090638 -135695817 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 8090590 8090752 -135695703 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 8090664 8090844 -135695611 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 8090861 8091151 -135695304 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 8092242 8093935 -135692520 - SVA Other Other -683 1384 34 252 0 0 0 chr12 8093939 8093967 -135692488 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 8094036 8094152 -135692303 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 8094191 8094369 -135692086 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 8095910 8096204 -135690251 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 8096217 8096266 -135690189 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 8096266 8096382 -135690073 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 8097869 8098172 -135688283 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 8099195 8099507 -135686948 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 8102274 8102405 -135684050 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 8104991 8105300 -135681155 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 8105344 8105457 -135680998 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 8105500 8105542 -135680913 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 8105839 8106242 -135680213 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 8106600 8107419 -135679036 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 8107440 8107491 -135678964 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 8107491 8107783 -135678672 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 8108782 8109124 -135677331 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 8109555 8109665 -135676790 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 8110569 8111057 -135675398 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 8111455 8111680 -135674775 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 8111718 8112281 -135674174 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 8112274 8112924 -135673531 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 8113748 8114037 -135672418 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 8114292 8114538 -135671917 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 8114533 8114622 -135671833 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 8114766 8115052 -135671403 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 8115577 8115892 -135670563 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 8116216 8116375 -135670080 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 8116556 8116707 -135669748 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 8117078 8117116 -135669339 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7762 32 8 2 chr12 8117116 8118839 -135667616 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 8119889 8120010 -135666445 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 8120944 8121760 -135664695 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 8121764 8122212 -135664243 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 8122212 8122384 -135664071 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 8122384 8122687 -135663768 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 8122687 8122846 -135663609 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 8122846 8123462 -135662993 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 8124575 8124640 -135661815 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 8125279 8125396 -135661059 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 8125401 8125422 -135661033 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 8125476 8125643 -135660812 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 8126247 8126349 -135660106 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 8126381 8126937 -135659518 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 8127887 8128118 -135658337 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 8128219 8128488 -135657967 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 8128488 8128798 -135657657 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 8128798 8128866 -135657589 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 8128860 8129400 -135657055 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 8129403 8129695 -135656760 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 8129699 8129971 -135656484 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 8130055 8130956 -135655499 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 8130975 8131204 -135655251 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 8131529 8131736 -135654719 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 8132148 8132235 -135654220 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 8132235 8132535 -135653920 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 8132535 8132836 -135653619 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 8133018 8133327 -135653128 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 8133476 8133637 -135652818 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 8133729 8134028 -135652427 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 8134036 8134204 -135652251 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 8134236 8134258 -135652197 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 8134786 8134896 -135651559 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 8135546 8135690 -135650765 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 8136130 8136407 -135650048 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 8136407 8137041 -135649414 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 8137041 8137080 -135649375 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 8238850 8238991 -135547464 + AluSg/x SINE Alu 152 292 -18 2180 82 44 3 chr12 8238994 8239310 -135547145 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 8239352 8239488 -135546967 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 8239488 8239791 -135546664 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 8239791 8239968 -135546487 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 8239977 8240287 -135546168 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 8240287 8240602 -135545853 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 8240602 8240719 -135545736 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 8240719 8241026 -135545429 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 8241032 8241326 -135545129 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 8241329 8241556 -135544899 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 8241556 8241865 -135544590 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 8241873 8241995 -135544460 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 8242177 8242208 -135544247 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 8242319 8242369 -135544086 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 8242682 8242965 -135543490 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 8242965 8243125 -135543330 + AluSg/x SINE Alu 134 295 -17 186 71 0 0 chr12 8243241 8243269 -135543186 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 8243314 8243612 -135542843 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 8243679 8243707 -135542748 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 8243707 8244016 -135542439 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 8244016 8244073 -135542382 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 8244599 8244905 -135541550 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 8245163 8245451 -135541004 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 8245665 8245717 -135540738 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 8245723 8246010 -135540445 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 8246030 8246172 -135540283 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 8246242 8246713 -135539742 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 8247005 8247037 -135539418 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 8247037 8247090 -135539365 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 8247090 8247348 -135539107 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 8247383 8247510 -135538945 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 8247540 8247583 -135538872 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 8247611 8247912 -135538543 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 8247914 8248244 -135538211 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 8248337 8248602 -135537853 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 8248602 8248741 -135537714 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 8248741 8248926 -135537529 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 8248926 8249229 -135537226 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 8249229 8249299 -135537156 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 8249726 8249829 -135536626 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 8249830 8249932 -135536523 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 8249932 8249955 -135536500 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 8249955 8250150 -135536305 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 8250179 8250201 -135536254 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 8250309 8250607 -135535848 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 8250610 8250716 -135535739 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 8250843 8250921 -135535534 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 8250949 8251238 -135535217 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 8251585 8251890 -135534565 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 8251989 8252294 -135534161 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 8252300 8252524 -135533931 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 8252885 8252965 -135533490 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 8252981 8253240 -135533215 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 8253513 8253566 -135532889 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 8253584 8253875 -135532580 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 8253934 8254091 -135532364 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 8255333 8255630 -135530825 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 8255674 8255884 -135530571 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 8255888 8256029 -135530426 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 8256049 8256187 -135530268 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 8256187 8256498 -135529957 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 8256498 8256611 -135529844 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 8256612 8256912 -135529543 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 8257144 8257286 -135529169 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 8257528 8257819 -135528636 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 8257837 8257890 -135528565 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 8257971 8258140 -135528315 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 8258140 8258436 -135528019 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 8258436 8258579 -135527876 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 8258591 8258786 -135527669 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 8258891 8259157 -135527298 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 8259176 8259222 -135527233 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 8259308 8259350 -135527105 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 8259397 8259664 -135526791 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 8259751 8259829 -135526626 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 8260036 8260067 -135526388 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 8260639 8260663 -135525792 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 8261036 8261340 -135525115 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 8261356 8261643 -135524812 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 8262111 8262190 -135524265 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 8262330 8262674 -135523781 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 8262937 8263010 -135523445 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 8263172 8263302 -135523153 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 8263305 8263546 -135522909 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 8263690 8263978 -135522477 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 8263979 8264449 -135522006 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 8264838 8265661 -135520794 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 8265674 8266308 -135520147 - ALR/Alpha Satellite centromeric 0 638 1 2509 53 0 0 chr12 8266708 8267011 -135519444 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8267333 8267471 -135518984 + AluSq/x SINE Alu 1 138 -175 1978 117 4 0 chr12 8267487 8267768 -135518687 + AluSx SINE Alu 21 302 -10 2037 110 0 17 chr12 8268175 8268310 -135518145 + AluSg SINE Alu 1 137 -173 1944 129 3 7 chr12 8268310 8268446 -135518009 + AluSg SINE Alu 1 135 -175 1316 170 19 99 chr12 8268446 8268769 -135517686 + AluJb SINE Alu 2 298 -4 2037 110 0 17 chr12 8268604 8268769 -135517686 + AluSg SINE Alu 137 296 -14 1619 104 7 100 chr12 8268770 8268915 -135517540 + AluSq SINE Alu 1 158 -155 2449 47 0 3 chr12 8268915 8269214 -135517241 + AluY SINE Alu 1 298 -13 1619 104 7 100 chr12 8269214 8269227 -135517228 + AluSq SINE Alu 158 171 -142 2173 99 0 10 chr12 8269227 8269539 -135516916 + AluY SINE Alu 3 311 0 1619 104 7 100 chr12 8269539 8269688 -135516767 + AluSq SINE Alu 171 280 -33 485 92 0 0 chr12 8269720 8269785 -135516670 - AluJ/FLAM SINE Alu -247 65 1 2344 86 0 0 chr12 8270044 8270345 -135516110 + AluY SINE Alu 1 301 -10 312 267 38 86 chr12 8270395 8270569 -135515886 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8270804 8270836 -135515619 + (TG)n Simple_repeat Simple_repeat 1 32 0 1914 128 3 22 chr12 8270898 8271211 -135515244 + AluSq SINE Alu 1 307 -6 277 290 0 0 chr12 8271216 8271285 -135515170 - MIR SINE MIR -74 188 120 362 25 0 0 chr12 8271286 8271326 -135515129 - tRNA-Thr-ACA tRNA tRNA -36 40 1 226 239 69 28 chr12 8271332 8271425 -135515030 - MIR SINE MIR -80 128 32 2160 84 7 23 chr12 8271631 8271940 -135514515 + AluSx SINE Alu 1 304 -8 623 228 16 0 chr12 8272252 8272379 -135514076 - MER5A DNA MER1_type 0 189 61 1718 143 3 14 chr12 8272380 8272667 -135513788 - MER39 LTR ERV1 0 707 424 2113 56 66 3 chr12 8272668 8272954 -135513501 - AluSg SINE Alu -6 304 1 252 0 0 0 chr12 8273067 8273095 -135513360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2012 104 4 0 chr12 8273098 8273378 -135513077 - AluSq SINE Alu -32 281 1 225 0 0 0 chr12 8273472 8273497 -135512958 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8273495 8273522 -135512933 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 351 291 57 23 chr12 8273763 8273938 -135512517 + L1ME4a LINE L1 5940 6120 -1 1410 155 3 97 chr12 8273948 8274112 -135512343 - AluJo SINE Alu -12 300 122 216 0 0 0 chr12 8274112 8274136 -135512319 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1708 130 0 11 chr12 8274136 8274397 -135512058 - AluSp SINE Alu -21 292 35 1410 155 3 97 chr12 8274397 8274560 -135511895 - AluJo SINE Alu -188 124 3 684 49 0 0 chr12 8274592 8274674 -135511781 - AluS SINE Alu -230 83 2 2023 123 7 3 chr12 8274705 8274998 -135511457 - AluSx SINE Alu -18 294 1 1457 148 15 77 chr12 8275112 8275254 -135511201 + AluSx SINE Alu 1 150 -162 2241 93 0 3 chr12 8275254 8275564 -135510891 + AluSg SINE Alu 1 309 -1 1457 148 15 77 chr12 8275564 8275745 -135510710 + AluSx SINE Alu 150 304 -8 1900 132 0 0 chr12 8275746 8276026 -135510429 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8276027 8276062 -135510393 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1731 178 0 0 chr12 8276104 8276407 -135510048 + AluJb SINE Alu 1 303 -9 1650 53 31 13 chr12 8276905 8277131 -135509324 - AluY SINE Alu -81 230 1 2174 167 10 15 chr12 8277154 8277508 -135508947 + MLT1A1 LTR MaLR 1 431 -26 2048 109 0 3 chr12 8277508 8277801 -135508654 + AluSx SINE Alu 1 292 -20 2174 167 10 15 chr12 8277801 8277828 -135508627 + MLT1A1 LTR MaLR 431 457 0 23 0 0 0 chr12 8277911 8277934 -135508521 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8277966 8277994 -135508461 + AT_rich Low_complexity Low_complexity 1 28 0 388 192 43 54 chr12 8278174 8278341 -135508114 - AluSx SINE Alu -4 298 235 4049 134 134 37 chr12 8278342 8279485 -135506970 + pTR5 LTR ERV1 290 2295 -143 1515 155 4 0 chr12 8279485 8279724 -135506731 - AluSx SINE Alu -72 240 1 1310 209 112 0 chr12 8279840 8280003 -135506452 - AluJo SINE Alu -4 298 155 213 65 0 0 chr12 8280003 8280034 -135506421 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1310 209 112 0 chr12 8280034 8280138 -135506317 - AluJo SINE Alu -147 155 1 233 233 56 78 chr12 8280261 8280351 -135506104 + MLT1H LTR MaLR 233 320 -229 397 269 92 15 chr12 8280400 8280530 -135505925 + MLT1H LTR MaLR 409 548 -1 1575 191 0 17 chr12 8280578 8280877 -135505578 + AluJo SINE Alu 1 294 -18 1977 121 3 13 chr12 8280878 8281176 -135505279 + AluSp SINE Alu 1 295 -18 1349 206 51 32 chr12 8281245 8281280 -135505175 + LTR53 LTR ERVL 189 222 -297 1870 172 0 3 chr12 8281280 8281588 -135504867 - AluSx SINE Alu -5 307 1 1349 206 51 32 chr12 8281588 8281863 -135504592 + LTR53 LTR ERVL 222 505 -14 2275 79 0 3 chr12 8282322 8282614 -135503841 - AluSc SINE Alu -18 291 1 264 137 0 39 chr12 8282800 8282849 -135503606 + Alu SINE Alu 1 47 -255 508 116 0 0 chr12 8282849 8282918 -135503537 - THE1C LTR MaLR 0 375 307 450 63 0 0 chr12 8282919 8282982 -135503473 - AluSp/q SINE Alu -11 302 240 1689 119 0 0 chr12 8282984 8283227 -135503228 + AluSg/x SINE Alu 67 309 -3 2354 72 7 0 chr12 8283737 8284043 -135502412 + AluSp SINE Alu 1 308 -5 429 233 12 0 chr12 8284076 8284162 -135502293 + FRAM/FAM SINE Alu 1 84 -92 2493 55 3 0 chr12 8284617 8284927 -135501528 - AluY SINE Alu 0 311 1 1419 225 32 42 chr12 8285084 8285128 -135501327 - MLT1A2 LTR MaLR 0 374 331 2302 101 0 0 chr12 8285128 8285436 -135501019 + AluSx SINE Alu 1 308 -4 1419 225 32 42 chr12 8285436 8285769 -135500686 - MLT1A2 LTR MaLR -43 331 1 1808 125 34 3 chr12 8285953 8286248 -135500207 + AluJo SINE Alu 1 304 -8 2082 150 52 86 chr12 8286625 8287066 -135499389 + MSTB LTR MaLR 1 426 0 1989 46 102 25 chr12 8287199 8287484 -135498971 + AluY SINE Alu 1 307 -4 371 201 84 123 chr12 8287715 8287894 -135498561 - L2 LINE L2 -10 3303 3132 2038 100 4 7 chr12 8288003 8288331 -135498124 - AluSg SINE Alu 0 329 3 2132 114 7 0 chr12 8288333 8288630 -135497825 - AluSx SINE Alu -13 299 1 1841 141 0 36 chr12 8288644 8288830 -135497625 - AluSq SINE Alu 0 313 148 1956 103 39 3 chr12 8288830 8289112 -135497343 - AluSx SINE Alu -20 292 1 1841 141 0 36 chr12 8289112 8289255 -135497200 - AluSq SINE Alu -165 148 1 210 247 65 32 chr12 8289502 8289595 -135496860 + L2 LINE L2 2239 2334 -980 673 174 0 43 chr12 8289595 8289733 -135496722 + AluJo/FLAM SINE Alu 1 132 -170 1238 62 74 0 chr12 8289735 8289911 -135496544 + AluSg SINE Alu 3 191 -119 2264 117 53 91 chr12 8290029 8290189 -135496266 - Tigger1 DNA MER2_type -1983 435 271 2281 87 0 6 chr12 8290189 8290500 -135495955 - AluSc SINE Alu 0 309 1 2264 117 53 91 chr12 8290500 8290791 -135495664 - Tigger1 DNA MER2_type -2147 271 1 537 252 38 0 chr12 8290791 8290922 -135495533 - L2 LINE L2 -251 3062 2927 469 224 116 48 chr12 8290950 8291097 -135495358 - MER58B DNA MER1_type -3 338 182 2082 85 4 0 chr12 8291118 8291422 -135495033 + AluY SINE Alu 1 305 0 785 222 26 5 chr12 8291424 8291618 -135494837 + L1M4 LINE L1 5100 5297 -849 2011 117 7 3 chr12 8291640 8291949 -135494506 + AluY SINE Alu 1 310 -1 243 283 116 7 chr12 8291978 8292116 -135494339 + Charlie2a DNA MER1_type 1482 1634 -1228 1249 135 34 10 chr12 8292116 8292323 -135494132 - AluSg/x SINE Alu -10 300 89 3730 169 72 51 chr12 8292323 8293128 -135493327 - LTR12 LTR ERV1 0 826 5 1230 167 27 12 chr12 8293143 8293401 -135493054 - pTR5 LTR ERV1 -1093 1345 1084 329 146 0 0 chr12 8293401 8293449 -135493006 - Alu SINE Alu -243 56 9 2139 106 0 3 chr12 8293464 8293766 -135492689 - AluSg SINE Alu -3 307 7 2043 118 3 0 chr12 8293771 8294075 -135492380 - AluSx SINE Alu -7 305 1 311 300 190 0 chr12 8294170 8294270 -135492185 + MER91A DNA MER1_type 58 176 -20 286 286 57 0 chr12 8294281 8294351 -135492104 + MER91A DNA MER1_type 123 196 0 427 174 43 35 chr12 8294378 8294493 -135491962 + Charlie2 DNA MER1_type 2726 2841 -21 2226 94 3 0 chr12 8294665 8294962 -135491493 + AluSp SINE Alu 2 299 -14 201 374 65 0 chr12 8295780 8295903 -135490552 + L2 LINE L2 2949 3079 -193 780 275 67 20 chr12 8296033 8296331 -135490124 + L2 LINE L2 575 886 -2428 2033 125 0 13 chr12 8296336 8296649 -135489806 - AluSx SINE Alu -3 309 1 1946 181 52 30 chr12 8296649 8296957 -135489498 + L1M4 LINE L1 4845 5168 -978 2224 102 3 0 chr12 8296957 8297260 -135489195 + AluSp SINE Alu 1 304 -9 1946 181 52 30 chr12 8297260 8297414 -135489041 + L1M4 LINE L1 5168 5317 -829 513 309 65 13 chr12 8297418 8297603 -135488852 - L2 LINE L2 -1317 1997 1796 1457 151 4 39 chr12 8297603 8297882 -135488573 - AluSx SINE Alu -11 301 33 513 309 65 13 chr12 8297882 8297926 -135488529 - L2 LINE L2 -1518 1796 1756 779 163 16 0 chr12 8297931 8298060 -135488395 + FLAM_A SINE Alu 1 131 -2 2017 133 3 0 chr12 8298149 8298449 -135488006 - AluSq SINE Alu -12 301 1 2192 85 0 3 chr12 8298471 8298786 -135487669 - AluSc SINE Alu 0 314 1 402 93 0 0 chr12 8298862 8298916 -135487539 + Alu SINE Alu 243 296 -4 580 284 18 30 chr12 8298916 8299085 -135487370 - MER5A DNA MER1_type -16 173 7 508 251 27 53 chr12 8299173 8299280 -135487175 - Charlie2 DNA MER1_type -2602 260 159 1531 184 23 26 chr12 8299280 8299585 -135486870 - 7SLRNA srpRNA srpRNA -15 305 2 508 251 27 53 chr12 8299585 8299664 -135486791 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8299708 8299774 -135486681 + AT_rich Low_complexity Low_complexity 1 63 0 2153 108 3 0 chr12 8299821 8300128 -135486327 + AluSg SINE Alu 1 308 -2 851 126 0 16 chr12 8300319 8300446 -135486009 + FLAM_C SINE Alu 5 129 -4 2169 102 3 0 chr12 8300648 8300952 -135485503 + AluSg SINE Alu 1 305 -5 1877 99 3 87 chr12 8300957 8301279 -135485176 + AluSp SINE Alu 19 313 0 915 324 35 19 chr12 8301282 8301656 -135484799 - L2 LINE L2 -660 2654 2275 251 121 0 0 chr12 8301657 8301690 -135484765 + U2 snRNA snRNA 1 33 -155 573 273 120 34 chr12 8301736 8302003 -135484452 - L3 LINE CR1 -145 1432 1143 1104 130 12 0 chr12 8302134 8302303 -135484152 - AluSg/x SINE Alu -8 302 132 2107 105 31 0 chr12 8302303 8302597 -135483858 - AluSg SINE Alu -7 303 1 323 241 38 0 chr12 8302927 8303006 -135483449 - L3 LINE CR1 -1081 496 415 982 228 25 0 chr12 8303006 8303203 -135483252 + MER20 DNA MER1_type 1 202 -17 671 121 0 0 chr12 8304938 8305037 -135481418 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8305037 8305062 -135481393 + AT_rich Low_complexity Low_complexity 1 25 0 2248 86 0 3 chr12 8305062 8305366 -135481089 + AluSc SINE Alu 1 303 -6 2068 100 0 19 chr12 8305828 8306137 -135480318 - AluSg SINE Alu -7 303 1 1707 162 0 4 chr12 8306260 8306531 -135479924 - AluJb SINE Alu -38 274 5 1879 116 10 3 chr12 8306604 8306898 -135479557 + AluSx SINE Alu 4 299 -13 2367 70 0 3 chr12 8306900 8307199 -135479256 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8307360 8307382 -135479073 + AT_rich Low_complexity Low_complexity 1 22 0 502 151 75 0 chr12 8308375 8308468 -135477987 - HY3 scRNA scRNA -1 100 1 2112 106 3 0 chr12 8308477 8308785 -135477670 - AluSp SINE Alu 0 309 1 391 192 0 0 chr12 8308787 8308860 -135477595 - MER5A DNA MER1_type -115 74 2 304 113 113 19 chr12 8309071 8309124 -135477331 + MER81 DNA DNA 36 93 -21 503 108 0 0 chr12 8309422 8309487 -135476968 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8309487 8309726 -135476729 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8309799 8309838 -135476617 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8309838 8310141 -135476314 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8310141 8310153 -135476302 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8310177 8310469 -135475986 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8310480 8310833 -135475622 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8310839 8311220 -135475235 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8311221 8311720 -135474735 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8311720 8311875 -135474580 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8311875 8312212 -135474243 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8312212 8312450 -135474005 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8312450 8312769 -135473686 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8312769 8312808 -135473647 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8312808 8313048 -135473407 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8313202 8313333 -135473122 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8313333 8313365 -135473090 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8313374 8313644 -135472811 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8313644 8313809 -135472646 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8313809 8314108 -135472347 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8314108 8314494 -135471961 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8314518 8314552 -135471903 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8314799 8315111 -135471344 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8315111 8315204 -135471251 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8316100 8316596 -135469859 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8316627 8316919 -135469536 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8316964 8317196 -135469259 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8317225 8317295 -135469160 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8317506 8317581 -135468874 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8317581 8317882 -135468573 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8317882 8317893 -135468562 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8317893 8318174 -135468281 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8318179 8318202 -135468253 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8318202 8318309 -135468146 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8318586 8318653 -135467802 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8318718 8319014 -135467441 - AluSx SINE Alu -16 296 1 1550 85 0 31 chr12 8319187 8319410 -135467045 + AluSg/x SINE Alu 95 310 0 456 123 37 12 chr12 8319422 8319503 -135466952 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8319591 8319613 -135466842 + AT_rich Low_complexity Low_complexity 1 22 0 1376 144 5 0 chr12 8319625 8319819 -135466636 - AluSx SINE Alu -117 195 1 2314 93 3 13 chr12 8320100 8320413 -135466042 - AluSx SINE Alu 0 312 3 3819 188 46 73 chr12 8320560 8321517 -135464938 - MER21A LTR ERV1 0 931 1 2249 96 4 0 chr12 8321979 8322284 -135464171 - AluSp SINE Alu 0 306 1 1678 165 0 86 chr12 8322398 8322531 -135463924 + AluJo SINE Alu 1 144 -168 2074 148 0 3 chr12 8322531 8322841 -135463614 - AluSx SINE Alu -3 309 1 1678 165 0 86 chr12 8322841 8323046 -135463409 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8323405 8323480 -135462975 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1736 99 119 0 chr12 8323480 8323733 -135462722 - AluSc SINE Alu -26 283 1 105 152 0 0 chr12 8323930 8324081 -135462374 + GC_rich Low_complexity Low_complexity 1 151 0 264 247 76 13 chr12 8324081 8324239 -135462216 + (CGCGG)n Simple_repeat Simple_repeat 3 170 0 230 371 38 0 chr12 8324214 8324319 -135462136 - SUBTEL_sa Satellite Satellite -43 131 23 * 213 124 0 0 chr12 8324319 8324602 -135461853 + GC_rich Low_complexity Low_complexity 1 283 0 200 286 18 18 chr12 8324621 8324733 -135461722 + (CCG)n Simple_repeat Simple_repeat 1 112 0 2041 97 14 4 chr12 8324887 8325188 -135461267 + AluSg SINE Alu 1 304 0 784 171 0 0 chr12 8325467 8325596 -135460859 + AluJo/FLAM SINE Alu 3 131 -171 274 161 18 0 chr12 8325598 8325654 -135460801 + Alu SINE Alu 245 301 -1 324 306 69 35 chr12 8325666 8325810 -135460645 - MIR SINE MIR -77 185 37 416 189 33 0 chr12 8326164 8326254 -135460201 + L1MC3 LINE L1 7476 7568 -217 2174 98 20 3 chr12 8326262 8326558 -135459897 + AluSx SINE Alu 1 301 -11 322 171 24 12 chr12 8326672 8326754 -135459701 + L1MC3 LINE L1 7608 7690 -95 2068 126 24 0 chr12 8326757 8327050 -135459405 + AluSc SINE Alu 1 300 -9 2219 114 0 7 chr12 8327061 8327358 -135459097 + AluSq SINE Alu 1 295 -18 350 134 31 26 chr12 8327365 8327588 -135458867 + AluJo SINE Alu 3 302 0 295 119 0 0 chr12 8327664 8327706 -135458749 + Alu SINE Alu 1 42 -257 894 184 0 0 chr12 8327757 8327904 -135458551 + FRAM SINE Alu 1 142 -34 1071 115 6 0 chr12 8327904 8328061 -135458394 - AluSg/x SINE Alu 0 312 155 322 171 24 12 chr12 8328272 8328354 -135458101 + L1MC3 LINE L1 7608 7690 -95 2188 116 10 0 chr12 8328357 8328651 -135457804 + AluSg SINE Alu 1 297 -13 2249 95 3 10 chr12 8328653 8328947 -135457508 + AluSg SINE Alu 3 294 -16 193 299 30 15 chr12 8329012 8329079 -135457376 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8329248 8329273 -135457182 + AT_rich Low_complexity Low_complexity 1 25 0 943 108 0 15 chr12 8329940 8330070 -135456385 - AluSg/x SINE Alu -102 208 81 2470 73 0 7 chr12 8330070 8330371 -135456084 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8330656 8330679 -135455776 + AT_rich Low_complexity Low_complexity 1 23 0 2076 108 3 3 chr12 8330679 8330965 -135455490 - AluSx SINE Alu -24 288 3 1530 133 0 0 chr12 8331141 8331351 -135455104 - AluSx SINE Alu -102 210 1 1627 140 0 0 chr12 8331364 8331593 -135454862 - AluSg/x SINE Alu -2 310 82 927 295 10 10 chr12 8331593 8331891 -135454564 - AluYa5 SINE Alu -3 298 1 198 0 0 0 chr12 8332377 8332399 -135454056 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1708 164 4 7 chr12 8332401 8332682 -135453773 - AluSx SINE Alu -30 282 3 520 92 255 0 chr12 8332682 8332780 -135453675 - Tigger7 DNA MER2_type -610 123 1 2014 101 4 0 chr12 8332803 8333070 -135453385 - AluSp SINE Alu -24 289 22 2221 118 3 0 chr12 8333644 8333941 -135452514 + AluSx SINE Alu 1 298 -14 869 277 7 17 chr12 8333949 8334249 -135452206 + AluSg SINE Alu 3 299 -1 2362 112 0 0 chr12 8334826 8335129 -135451326 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8335390 8335413 -135451042 + GC_rich Low_complexity Low_complexity 1 23 0 1306 139 10 10 chr12 8336021 8336222 -135450233 - AluSx SINE Alu -111 201 1 311 298 78 35 chr12 8336222 8336363 -135450092 - HAL1 LINE L1 -173 2334 2188 195 139 0 0 chr12 8336367 8336403 -135450052 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8336527 8336548 -135449907 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8336684 8336705 -135449750 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8336914 8336937 -135449518 + AT_rich Low_complexity Low_complexity 1 23 0 906 115 0 0 chr12 8337238 8337351 -135449104 - AluSq/x SINE Alu -200 113 1 585 151 0 0 chr12 8337351 8337437 -135449018 - AluS SINE Alu -225 87 2 440 214 74 16 chr12 8337439 8337654 -135448801 + LTR23 LTR ERV1 235 437 0 225 223 138 85 chr12 8337656 8337786 -135448669 - L2 LINE L2 -2 3311 3175 533 175 123 9 chr12 8337805 8337919 -135448536 + FLAM_A SINE Alu 12 138 -4 2180 106 33 7 chr12 8337931 8338234 -135448221 + AluSq SINE Alu 1 311 -2 2421 76 0 7 chr12 8338314 8338616 -135447839 + AluY SINE Alu 7 306 -5 2200 102 41 0 chr12 8338824 8339118 -135447337 + AluSx SINE Alu 1 306 -6 2253 45 0 34 chr12 8339221 8339557 -135446898 - AluY SINE Alu 0 328 3 669 146 38 38 chr12 8339758 8339885 -135446570 + Charlie5 DNA MER1_type 2401 2530 -55 1896 149 3 14 chr12 8339885 8340181 -135446274 - AluSx SINE Alu -17 295 3 669 146 38 38 chr12 8340181 8340238 -135446217 + Charlie5 DNA MER1_type 2529 2585 0 2548 77 0 3 chr12 8340668 8340980 -135445475 - AluY SINE Alu 0 311 1 2344 86 3 10 chr12 8340980 8341284 -135445171 - AluSq SINE Alu -11 302 1 1751 137 58 41 chr12 8341675 8341967 -135444488 - AluJo SINE Alu -13 299 3 483 91 0 152 chr12 8342039 8342075 -135444380 + AluSc SINE Alu 2 42 -267 2143 98 39 0 chr12 8342075 8342360 -135444095 - AluSq SINE Alu -17 296 1 483 91 0 152 chr12 8342360 8342412 -135444043 + AluSc SINE Alu 42 76 -233 2296 63 42 0 chr12 8342412 8342697 -135443758 + AluY SINE Alu 2 298 -13 352 182 0 0 chr12 8342791 8342857 -135443598 + Charlie5 DNA MER1_type 129 194 -2418 869 154 99 0 chr12 8342859 8343080 -135443375 + Charlie5 DNA MER1_type 2382 2624 0 2397 49 3 62 chr12 8343815 8344139 -135442316 - AluY SINE Alu -6 305 1 245 333 0 11 chr12 8344139 8344229 -135442226 + L2 LINE L2 3221 3309 -4 2596 62 0 0 chr12 8344329 8344634 -135441821 + AluSg SINE Alu 1 305 -5 189 0 0 0 chr12 8345127 8345148 -135441307 + (A)n Simple_repeat Simple_repeat 1 21 0 221 0 0 33 chr12 8345277 8345307 -135441148 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2180 102 7 0 chr12 8346095 8346388 -135440067 - AluSp SINE Alu -17 296 2 747 197 7 7 chr12 8346433 8346570 -135439885 + FLAM_C SINE Alu 2 138 -5 558 228 0 32 chr12 8347833 8347956 -135438499 + FLAM_A SINE Alu 1 119 -14 2013 125 3 20 chr12 8349088 8349383 -135437072 + AluSq SINE Alu 6 295 -18 2247 95 3 0 chr12 8349386 8349680 -135436775 + AluY SINE Alu 6 300 -11 709 174 123 58 chr12 8349758 8349913 -135436542 - FRAM SINE Alu -12 164 1 203 213 43 0 chr12 8350362 8350409 -135436046 + MIR SINE MIR 183 231 -31 2444 82 0 0 chr12 8350465 8350768 -135435687 + AluY SINE Alu 1 303 -8 2113 107 21 3 chr12 8351280 8351571 -135434884 + AluSp SINE Alu 1 296 -17 1131 137 11 33 chr12 8351924 8352107 -135434348 + FRAM SINE Alu 1 172 -4 654 151 48 48 chr12 8352603 8352729 -135433726 + FLAM_A SINE Alu 1 126 -7 2365 88 0 3 chr12 8353149 8353443 -135433012 - AluSc SINE Alu -16 293 1 1710 130 0 86 chr12 8353448 8353763 -135432692 - AluSx SINE Alu -23 289 2 29 0 0 0 chr12 8354681 8354710 -135431745 + AT_rich Low_complexity Low_complexity 1 29 0 652 171 16 47 chr12 8354895 8355024 -135431431 + AluJb SINE Alu 1 125 -187 1944 128 4 0 chr12 8355170 8355444 -135431011 + AluSx SINE Alu 1 275 -37 3841 188 38 77 chr12 8355966 8356930 -135429525 - MER21A LTR ERV1 -4 927 1 2258 110 3 0 chr12 8357493 8357792 -135428663 + AluSp SINE Alu 1 300 -13 1064 206 9 138 chr12 8357801 8357937 -135428518 + AluSx SINE Alu 1 66 -246 1706 138 4 4 chr12 8357937 8358184 -135428271 - AluSx SINE Alu -20 292 46 1064 206 9 138 chr12 8358184 8358396 -135428059 + AluSx SINE Alu 66 304 -8 1857 139 64 4 chr12 8358817 8359098 -135427357 + AluSx SINE Alu 1 298 -14 368 148 123 0 chr12 8359115 8359196 -135427259 + Tigger7 DNA MER2_type 31 121 -584 1478 148 12 136 chr12 8359196 8359534 -135426921 + AluSq SINE Alu 1 296 -7 704 134 0 0 chr12 8359552 8359649 -135426806 - AluJ/FLAM SINE Alu -214 98 2 538 98 49 0 chr12 8360648 8360730 -135425725 - L1PA8 LINE L1 -1 6171 6086 2185 88 32 0 chr12 8361850 8362134 -135424321 + AluSg SINE Alu 1 293 -17 2386 78 0 3 chr12 8362527 8362820 -135423635 + AluSp SINE Alu 1 292 -21 2316 112 0 3 chr12 8362939 8363243 -135423212 - AluSq SINE Alu -10 303 1 348 236 122 24 chr12 8363243 8363366 -135423089 + L2 LINE L2 2687 2821 -493 1838 154 35 0 chr12 8363451 8363737 -135422718 - AluSq SINE Alu -17 296 1 2070 88 49 14 chr12 8363836 8364120 -135422335 + AluSq SINE Alu 1 294 -19 491 201 42 74 chr12 8364493 8364625 -135421830 - LTR41 LTR ERVL -590 183 57 2581 45 0 19 chr12 8364625 8364934 -135421521 + AluY SINE Alu 1 303 -8 491 201 42 74 chr12 8364934 8364990 -135421465 - LTR41 LTR ERVL -716 57 1 198 103 0 0 chr12 8365625 8365654 -135420801 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 2360 64 0 42 chr12 8365963 8366276 -135420179 - AluSp SINE Alu -13 300 1 1192 142 6 0 chr12 8366291 8366474 -135419981 + AluSg/x SINE Alu 123 306 -6 503 197 30 23 chr12 8366474 8366606 -135419849 + L1MB8 LINE L1 5876 6008 -170 2031 131 7 3 chr12 8366619 8366910 -135419545 + AluJb SINE Alu 1 292 -20 2522 70 0 13 chr12 8366931 8367246 -135419209 + AluY SINE Alu 1 311 0 381 310 14 28 chr12 8367246 8367462 -135418993 + L1MC4a LINE L1 5736 5948 -1860 2261 86 7 0 chr12 8367623 8367913 -135418542 + AluSp SINE Alu 6 297 -16 2505 49 0 0 chr12 8368014 8368322 -135418133 + AluY SINE Alu 1 308 0 511 357 13 21 chr12 8368503 8368741 -135417714 + L1MEd LINE L1 674 909 -5463 1049 98 0 0 chr12 8368761 8368893 -135417562 + AluSq/x SINE Alu 1 132 -181 2177 113 3 0 chr12 8368893 8369201 -135417254 + AluSq SINE Alu 1 309 0 1538 122 0 0 chr12 8369216 8369421 -135417034 + AluSx SINE Alu 5 209 -103 810 177 0 0 chr12 8369516 8369640 -135416815 - FLAM_A SINE Alu -8 134 11 2455 74 0 3 chr12 8369654 8369950 -135416505 - AluSp SINE Alu -18 295 1 341 307 73 39 chr12 8369950 8370122 -135416333 + L1MEd LINE L1 2257 2437 -3947 31 0 0 0 chr12 8370120 8370151 -135416304 + AT_rich Low_complexity Low_complexity 1 31 0 * 2004 135 0 22 chr12 8370253 8370571 -135415884 + AluSx SINE Alu 1 311 -1 2348 204 8 22 chr12 8370574 8370840 -135415615 - L1MB7 LINE L1 -146 6038 5770 1932 145 3 0 chr12 8370840 8371136 -135415319 - AluSx SINE Alu -15 297 1 2348 204 8 22 chr12 8371136 8371242 -135415213 - L1MB7 LINE L1 -414 5770 5664 3541 70 7 11 chr12 8371242 8371697 -135414758 - MLT2A2 LTR ERVL 0 453 1 2348 204 8 22 chr12 8371697 8371814 -135414641 - L1MB7 LINE L1 -520 5664 5555 439 95 0 0 chr12 8371819 8371882 -135414573 + MER41A LTR ERV1 400 462 -92 1571 109 0 28 chr12 8371897 8372145 -135414310 - AluSp SINE Alu 0 313 73 1879 113 34 20 chr12 8372145 8372437 -135414018 - AluSx SINE Alu -15 297 2 21 0 0 0 chr12 8372437 8372458 -135413997 + AT_rich Low_complexity Low_complexity 1 21 0 1783 130 4 0 chr12 8372465 8372726 -135413729 - AluSx SINE Alu -50 262 1 1195 139 0 0 chr12 8372913 8373100 -135413355 - AluSq SINE Alu -4 309 123 1815 141 7 10 chr12 8373118 8373408 -135413047 - AluSx SINE Alu -23 289 1 2117 94 0 0 chr12 8373468 8373755 -135412700 + AluSx SINE Alu 11 297 -15 2030 125 0 3 chr12 8373892 8374197 -135412258 + AluSg SINE Alu 1 304 -6 1360 185 68 43 chr12 8374397 8374678 -135411777 + AluJb SINE Alu 4 291 -11 1950 122 10 10 chr12 8374738 8375033 -135411422 + AluSg SINE Alu 1 295 -15 2104 92 0 7 chr12 8376569 8376862 -135409593 + AluSg SINE Alu 1 291 -19 2105 112 3 0 chr12 8376868 8377164 -135409291 + AluSp SINE Alu 1 297 -16 2204 76 0 20 chr12 8377211 8377513 -135408942 + AluSx SINE Alu 1 296 -16 1943 101 73 0 chr12 8377670 8377958 -135408497 + AluSq SINE Alu 1 309 -4 824 204 0 0 chr12 8377965 8378107 -135408348 + AluJb SINE Alu 140 281 -31 632 109 11 0 chr12 8378101 8378193 -135408262 - AluSp/q SINE Alu -6 307 215 * 189 0 0 0 chr12 8378497 8378518 -135407937 + (A)n Simple_repeat Simple_repeat 1 21 0 1809 128 24 14 chr12 8378522 8378811 -135407644 + AluSx SINE Alu 5 296 -16 1838 114 32 4 chr12 8378813 8379094 -135407361 + AluSp SINE Alu 4 292 -21 2258 95 3 0 chr12 8379347 8379653 -135406802 + AluSc SINE Alu 1 307 -2 2145 123 0 0 chr12 8379656 8379966 -135406489 + AluSg SINE Alu 1 310 0 1825 161 7 3 chr12 8379968 8380273 -135406182 - AluSx SINE Alu -6 306 1 563 130 0 0 chr12 8381002 8381079 -135405376 + AluS SINE Alu 2 78 -234 480 113 0 0 chr12 8381074 8381136 -135405319 - AluSx SINE Alu -35 277 216 * 910 126 0 0 chr12 8381144 8381279 -135405176 - AluSx SINE Alu -177 135 1 589 165 25 25 chr12 8381298 8381419 -135405036 - FLAM_A SINE Alu -21 121 1 361 167 0 0 chr12 8381765 8381831 -135404624 - AluS SINE Alu -5 296 231 1329 108 5 0 chr12 8381833 8382018 -135404437 - AluSq SINE Alu -127 186 1 1850 78 114 14 chr12 8382108 8382389 -135404066 - AluSc SINE Alu 0 309 1 22 0 0 0 chr12 8383390 8383412 -135403043 + AT_rich Low_complexity Low_complexity 1 22 0 1287 186 25 68 chr12 8383455 8383600 -135402855 + AluJb SINE Alu 1 151 -161 2267 42 0 62 chr12 8383600 8383909 -135402546 + AluY SINE Alu 8 297 -14 1287 186 25 68 chr12 8383909 8384086 -135402369 + AluJb SINE Alu 151 309 -3 2339 87 0 0 chr12 8384242 8384552 -135401903 - AluSx SINE Alu -2 310 1 1677 116 135 4 chr12 8385448 8385715 -135400740 + AluSx SINE Alu 1 302 0 1701 152 0 35 chr12 8386287 8386403 -135400052 - AluSx SINE Alu -8 304 185 2269 84 3 0 chr12 8386403 8386700 -135399755 + AluSp SINE Alu 4 301 -12 1701 152 0 35 chr12 8386700 8386898 -135399557 - AluSx SINE Alu -127 185 1 2087 122 0 6 chr12 8386907 8387218 -135399237 - AluSx SINE Alu -3 309 1 2045 93 10 10 chr12 8387231 8387531 -135398924 - AluSx SINE Alu -12 300 1 2483 40 0 7 chr12 8388303 8388600 -135397855 - AluY SINE Alu -16 295 1 2213 97 0 0 chr12 8389668 8389968 -135396487 + AluY SINE Alu 1 300 -11 2090 96 6 19 chr12 8390022 8390336 -135396119 + AluSx SINE Alu 1 310 -2 198 257 146 21 chr12 8391080 8391224 -135395231 - L2 LINE L2 -108 3205 3044 3877 96 12 50 chr12 8391417 8391813 -135394642 + MER41A LTR ERV1 1 411 -143 2213 82 0 0 chr12 8391813 8392093 -135394362 + AluSq SINE Alu 14 293 -20 2101 97 10 7 chr12 8392103 8392402 -135394053 + AluSp SINE Alu 1 300 -13 3877 96 12 50 chr12 8392402 8392570 -135393885 + MER41A LTR ERV1 420 554 0 2366 82 0 3 chr12 8392813 8393118 -135393337 - AluSc SINE Alu -5 304 1 191 222 0 0 chr12 8393142 8393178 -135393277 + L2 LINE L2 2514 2549 -765 570 308 98 37 chr12 8393495 8393933 -135392522 - L2 LINE L2 -304 3009 2548 646 33 11 11 chr12 8394006 8394096 -135392359 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 251 253 12 96 chr12 8394096 8394179 -135392276 + L2 LINE L2 3190 3265 -48 503 250 91 0 chr12 8394184 8394316 -135392139 + MER5A DNA MER1_type 18 161 -28 2444 62 0 0 chr12 8394424 8394728 -135391727 + AluSx SINE Alu 1 304 -8 1476 167 21 11 chr12 8395156 8395246 -135391209 + AluJo SINE Alu 29 117 -195 432 0 0 0 chr12 8395246 8395294 -135391161 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8395294 8395484 -135390971 + AluJo SINE Alu 117 312 0 1214 121 0 0 chr12 8395489 8395663 -135390792 + AluSg/x SINE Alu 136 309 0 291 211 28 0 chr12 8395865 8395936 -135390519 + MER5A DNA MER1_type 77 149 -40 186 43 0 0 chr12 8395940 8395963 -135390492 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1950 108 21 0 chr12 8396160 8396447 -135390008 - AluSq SINE Alu -20 293 1 626 143 0 0 chr12 8397126 8397224 -135389231 + HY1 scRNA scRNA 14 111 -1 24 32 0 0 chr12 8397237 8397268 -135389187 + AT_rich Low_complexity Low_complexity 1 31 0 2217 74 11 0 chr12 8397416 8397723 -135388732 + AluY SINE Alu 1 310 0 2008 104 40 0 chr12 8397753 8398050 -135388405 + AluY SINE Alu 1 309 -2 2281 93 3 0 chr12 8398070 8398380 -135388075 + AluY SINE Alu 1 311 0 1866 147 0 13 chr12 8398404 8398711 -135387744 - AluSg SINE Alu -7 303 1 1653 153 11 14 chr12 8398799 8399081 -135387374 - AluSx SINE Alu -23 289 9 320 161 0 16 chr12 8399103 8399165 -135387290 - AluSq SINE Alu -4 297 237 4689 141 31 33 chr12 8399168 8400542 -135385913 - pTR5 LTR ERV1 0 2438 743 1655 96 8 4 chr12 8400542 8400782 -135385673 - AluSq SINE Alu -72 241 1 1030 90 0 0 chr12 8400782 8400915 -135385540 - AluSg SINE Alu -177 133 1 225 94 0 0 chr12 8400917 8400949 -135385506 + (T)n Simple_repeat Simple_repeat 1 32 0 1026 114 0 0 chr12 8400953 8401093 -135385362 - AluSc SINE Alu -169 140 1 827 103 0 8 chr12 8401152 8401269 -135385186 - AluSg/x SINE Alu -18 294 179 210 154 0 0 chr12 8401273 8401312 -135385143 + T-rich Low_complexity Low_complexity 4 42 0 2151 91 10 0 chr12 8401322 8401619 -135384836 - AluSp SINE Alu -13 300 1 1701 155 17 3 chr12 8401621 8401917 -135384538 - AluSx SINE Alu -12 300 1 2030 125 0 7 chr12 8401936 8402240 -135384215 - AluSq SINE Alu -11 302 1 299 170 0 0 chr12 8402240 8402293 -135384162 - Alu SINE Alu -5 297 245 377 159 0 0 chr12 8402323 8402386 -135384069 - FLAM SINE Alu -8 125 63 1525 86 53 16 chr12 8402386 8402631 -135383824 + LTR61 LTR ERV1 1 254 -341 2091 114 0 0 chr12 8402635 8402943 -135383512 - AluSg SINE Alu -2 308 1 1422 138 0 0 chr12 8403081 8403291 -135383164 + AluSq SINE Alu 1 210 -103 1999 136 0 0 chr12 8403294 8403596 -135382859 + AluSq SINE Alu 6 307 -6 1785 141 47 10 chr12 8403599 8403898 -135382557 + AluSg SINE Alu 1 310 0 1789 161 3 0 chr12 8403916 8404214 -135382241 + AluSq SINE Alu 2 300 -13 544 213 0 0 chr12 8404226 8404320 -135382135 + AluJb SINE Alu 196 289 -23 2157 100 20 0 chr12 8404342 8404643 -135381812 + AluSx SINE Alu 1 307 -5 492 185 131 8 chr12 8404643 8404773 -135381682 + L1MA9 LINE L1 5802 5947 -365 408 176 15 0 chr12 8404781 8404849 -135381606 - AluJo SINE Alu -117 185 117 1686 133 19 4 chr12 8404923 8405193 -135381262 - L1M2 LINE L1 -546 5766 5493 1226 184 13 92 chr12 8405198 8405335 -135381120 - MLT1A1 LTR MaLR -84 281 135 2125 114 3 10 chr12 8405335 8405643 -135380812 - AluSx SINE Alu -6 306 1 2031 114 0 10 chr12 8405652 8405949 -135380506 - AluSx SINE Alu -18 294 1 1226 184 13 92 chr12 8405949 8406106 -135380349 - MLT1A1 LTR MaLR -238 127 1 1718 149 0 0 chr12 8406110 8406378 -135380077 - AluSx SINE Alu -8 304 37 347 245 40 44 chr12 8406382 8406529 -135379926 - L1MC4 LINE L1 -1346 6976 1941 311 227 39 86 chr12 8406506 8406634 -135379821 + L1MC4 LINE L1 1942 2063 -4363 * 345 292 50 40 chr12 8406560 8406876 -135379579 - L1MC4 LINE L1 -159 6703 5667 309 283 11 22 chr12 8406852 8406944 -135379511 + L1MC4 LINE L1 6615 6705 -1337 * 2167 94 0 0 chr12 8406961 8407248 -135379207 - AluSg SINE Alu -23 287 1 1875 172 0 0 chr12 8407416 8407719 -135378736 + AluJb SINE Alu 1 303 -9 2086 112 3 10 chr12 8407735 8408040 -135378415 - AluSc SINE Alu -5 304 2 1009 333 156 19 chr12 8408732 8408855 -135377600 + L2 LINE L2 1606 1711 -1603 2034 101 42 0 chr12 8408855 8409143 -135377312 + AluSg SINE Alu 1 300 -10 1009 333 156 19 chr12 8409143 8410024 -135376431 + L2 LINE L2 1711 2748 -566 1997 249 51 10 chr12 8410042 8410556 -135375899 + MLT1H LTR MaLR 13 547 -2 296 333 197 19 chr12 8410755 8410968 -135375487 + L2 LINE L2 3016 3266 -6 1480 174 0 52 chr12 8411032 8411319 -135375136 + AluSx SINE Alu 1 272 -40 418 245 92 31 chr12 8412143 8412437 -135374018 - L1ME4a LINE L1 -21 6100 5789 324 256 124 16 chr12 8412669 8412798 -135373657 + L1ME4a LINE L1 5975 6117 -4 885 224 56 0 chr12 8414699 8414931 -135371524 - L1MC4 LINE L1 -1338 6704 6460 335 256 11 131 chr12 8416371 8416547 -135369908 - MLT1I LTR MaLR -18 391 237 526 259 42 17 chr12 8416801 8417064 -135369391 + Charlie7 DNA MER1_type 1 318 -2294 1291 256 57 117 chr12 8417085 8417823 -135368632 + MER21B LTR ERV1 24 717 -146 1981 139 3 0 chr12 8418028 8418337 -135368118 + AluSq SINE Alu 1 310 -3 286 149 0 0 chr12 8418406 8418453 -135368002 - L1M4 LINE L1 -309 5875 5829 1213 219 78 62 chr12 8418454 8418784 -135367671 - MLT1A1 LTR MaLR -2 363 25 2366 118 90 18 chr12 8418784 8419183 -135367272 + MSTA LTR MaLR 1 428 0 1213 219 78 62 chr12 8419183 8419209 -135367246 - MLT1A1 LTR MaLR -340 25 1 265 95 0 0 chr12 8419209 8419251 -135367204 - L1M4 LINE L1 -350 5834 5793 1032 192 63 49 chr12 8419251 8419670 -135366785 + MER4C LTR ERV1 275 464 -1 244 167 183 17 chr12 8419681 8419741 -135366714 + LTR67 LTR ERVL 10 79 -478 2268 120 7 0 chr12 8420013 8420322 -135366133 + AluSx SINE Alu 1 311 -1 1189 278 83 83 chr12 8420736 8421150 -135365305 + ERVL LTR ERVL 2110 2526 -3238 1702 158 0 85 chr12 8421150 8421290 -135365165 + AluJb SINE Alu 1 101 -211 2094 125 7 3 chr12 8421290 8421577 -135364878 + AluSx SINE Alu 1 288 -24 1702 158 0 85 chr12 8421577 8421752 -135364703 + AluJb SINE Alu 101 289 -23 1189 278 83 83 chr12 8421752 8422061 -135364394 + ERVL LTR ERVL 2525 2833 -2931 866 187 58 0 chr12 8422092 8422247 -135364208 + MER5A DNA MER1_type 1 164 -25 633 296 103 38 chr12 8422303 8422729 -135363726 + ERVL LTR ERVL 2993 3446 -2318 261 330 168 11 chr12 8422762 8422947 -135363508 + L1MEd LINE L1 242 455 -5664 473 239 56 56 chr12 8422955 8423008 -135363447 + L1MC4 LINE L1 6857 6909 -1133 2635 40 0 0 chr12 8423008 8423309 -135363146 + AluY SINE Alu 1 301 -10 473 239 56 56 chr12 8423309 8423397 -135363058 + L1MC4 LINE L1 6908 6998 -1044 629 316 43 23 chr12 8423558 8423814 -135362641 + LTR16C LTR ERVL 137 397 -94 3643 27 2 0 chr12 8424179 8424585 -135361870 + L1PA4 LINE L1 5749 6155 0 481 342 22 13 chr12 8424727 8424958 -135361497 + L1MEd LINE L1 493 725 -5394 23 33 0 0 chr12 8425038 8425068 -135361387 + AT_rich Low_complexity Low_complexity 1 30 0 1112 98 24 37 chr12 8425170 8425284 -135361171 + L1PA16 LINE L1 5995 6109 -57 2243 109 3 0 chr12 8425284 8425586 -135360869 + AluSp SINE Alu 1 303 -10 420 55 0 0 chr12 8425587 8425642 -135360813 + (CA)n Simple_repeat Simple_repeat 2 56 0 1112 98 24 37 chr12 8425642 8425689 -135360766 + L1PA16 LINE L1 6108 6156 -10 305 253 105 19 chr12 8425714 8425876 -135360579 + L1ME LINE L1 5617 5792 -329 38 51 0 0 chr12 8425956 8426015 -135360440 + AT_rich Low_complexity Low_complexity 1 59 0 2282 106 3 0 chr12 8426072 8426373 -135360082 + AluSx SINE Alu 1 302 -10 2399 75 3 0 chr12 8426380 8426674 -135359781 + AluY SINE Alu 1 295 -16 314 223 80 78 chr12 8427206 8427424 -135359031 + MIR SINE MIR 76 249 -13 235 250 0 0 chr12 8427760 8427812 -135358643 - L2 LINE L2 -11 3302 3251 814 210 0 6 chr12 8427828 8427985 -135358470 - FRAM SINE Alu -23 153 1 621 241 71 18 chr12 8428014 8428184 -135358271 - MIR SINE MIR -82 180 2 13283 178 25 27 chr12 8429350 8431902 -135354553 + L1PA15 LINE L1 2834 5390 -775 2405 87 0 10 chr12 8431902 8432211 -135354244 + AluSg SINE Alu 1 306 -4 13283 178 25 27 chr12 8432211 8432984 -135353471 + L1PA15 LINE L1 5390 6163 -2 181 393 105 20 chr12 8433521 8433816 -135352639 - L2 LINE L2 -5 3267 2948 2302 94 7 0 chr12 8433868 8434175 -135352280 + AluY SINE Alu 1 309 -2 3685 142 29 29 chr12 8434704 8434729 -135351726 - L1 LINE L1 -1909 5656 5632 2447 144 71 2 chr12 8434729 8435153 -135351302 - L1MA9 LINE L1 0 6312 5860 3685 142 29 29 chr12 8435153 8435809 -135350646 - L1 LINE L1 -1932 5633 4975 2807 204 90 64 chr12 8435826 8435846 -135350609 - L1 LINE L1 -2987 4578 4560 2422 90 0 0 chr12 8435846 8436146 -135350309 - AluSg SINE Alu -10 300 1 2807 204 90 64 chr12 8436146 8436726 -135349729 - L1 LINE L1 -3005 4560 3996 351 21 0 0 chr12 8436726 8436773 -135349682 + MER41B LTR ERV1 502 548 -87 2807 204 90 64 chr12 8436773 8436841 -135349614 - L1 LINE L1 -3569 3996 3931 2152 121 14 0 chr12 8436841 8437138 -135349317 + AluSx SINE Alu 1 301 -11 2807 204 90 64 chr12 8437138 8437225 -135349230 - L1 LINE L1 -3634 3931 3848 3057 164 27 40 chr12 8437225 8437655 -135348800 - MER44D DNA MER2_type -1882 605 127 2556 37 10 3 chr12 8437655 8437954 -135348501 - AluY SINE Alu -10 301 1 3057 164 27 40 chr12 8437954 8438077 -135348378 - MER44D DNA MER2_type -2360 127 4 2807 204 90 64 chr12 8438077 8438559 -135347896 - L1 LINE L1 -3717 3848 3238 929 145 0 0 chr12 8438559 8438690 -135347765 - FLAM_C SINE Alu -2 131 1 2807 204 90 64 chr12 8438690 8438765 -135347690 - L1 LINE L1 -4327 3238 3166 2202 117 7 0 chr12 8438780 8439078 -135347377 - AluSx SINE Alu -12 300 1 1622 204 18 0 chr12 8439088 8439373 -135347082 - AluJo SINE Alu -12 300 11 2941 3 0 0 chr12 8442004 8442316 -135344139 + AluYb8 SINE Alu 1 312 -6 3689 166 22 42 chr12 8442321 8442786 -135343669 + L1MD2 LINE L1 5656 6104 -255 1900 172 3 0 chr12 8442786 8443083 -135343372 + AluJo SINE Alu 1 298 -14 3689 166 22 42 chr12 8443083 8443335 -135343120 + L1MD2 LINE L1 6104 6359 0 408 287 39 116 chr12 8443686 8443778 -135342677 - MIR SINE MIR -10 252 154 222 37 0 0 chr12 8443778 8443805 -135342650 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1865 150 21 7 chr12 8443808 8444095 -135342360 - AluJb SINE Alu -9 303 13 408 287 39 116 chr12 8444095 8444256 -135342199 - MIR SINE MIR -110 152 15 665 312 146 14 chr12 8444895 8445190 -135341265 - LTR16C LTR ERVL 0 491 158 3644 123 48 0 chr12 8445828 8446331 -135340124 + MER1A DNA MER1_type 1 527 0 834 259 75 19 chr12 8446414 8446626 -135339829 + MER58A DNA MER1_type 1 224 0 1901 108 31 0 chr12 8446733 8446992 -135339463 - AluSq SINE Alu -13 300 34 1958 124 38 0 chr12 8447891 8448182 -135338273 + AluSx SINE Alu 1 302 -10 2282 253 84 46 chr12 8448328 8449374 -135337081 - L2 LINE L2 -8 3305 2239 989 171 12 0 chr12 8449865 8450029 -135336426 + FRAM SINE Alu 1 165 -11 25 31 0 0 chr12 8450264 8450296 -135336159 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 8450526 8450556 -135335899 + AT_rich Low_complexity Low_complexity 1 30 0 297 0 0 0 chr12 8450590 8450623 -135335832 + (TG)n Simple_repeat Simple_repeat 2 34 0 1933 104 30 11 chr12 8450627 8450896 -135335559 - AluSx SINE Alu -36 276 3 2136 116 3 7 chr12 8450919 8451221 -135335234 - AluSx SINE Alu -11 301 1 370 273 71 60 chr12 8451478 8451547 -135334908 - MIR SINE MIR -6 256 189 2196 129 0 16 chr12 8451547 8451864 -135334591 + AluSx SINE Alu 1 312 0 370 273 71 60 chr12 8451864 8451977 -135334478 - MIR SINE MIR -73 189 72 2274 101 0 13 chr12 8452234 8452542 -135333913 + AluSg SINE Alu 1 304 -6 326 300 142 17 chr12 8452679 8452799 -135333656 - L2 LINE L2 0 3272 3138 1560 74 165 0 chr12 8452889 8453119 -135333336 + L1PA7 LINE L1 5887 6154 0 1776 170 0 16 chr12 8453510 8453822 -135332633 + AluJo SINE Alu 1 307 -5 2258 117 7 0 chr12 8453826 8454133 -135332322 + AluSg SINE Alu 1 309 -1 202 193 0 0 chr12 8454265 8454310 -135332145 - MIR SINE MIR -66 142 108 387 0 0 0 chr12 8454734 8454777 -135331678 + (TG)n Simple_repeat Simple_repeat 1 43 0 742 278 83 14 chr12 8456577 8456893 -135329562 + L1MC/D LINE L1 5468 5800 -362 210 344 83 42 chr12 8457175 8457463 -135328992 + L2 LINE L2 499 798 -2516 219 368 164 9 chr12 8457624 8458081 -135328374 + L2 LINE L2 1182 1709 -1605 262 343 160 73 chr12 8458182 8458564 -135327891 + L2 LINE L2 2856 3270 -2 2165 124 3 13 chr12 8458630 8458945 -135327510 + AluSx SINE Alu 1 312 0 533 172 0 0 chr12 8459782 8459869 -135326586 + L2 LINE L2 3225 3311 -2 404 263 113 31 chr12 8460425 8460827 -135325628 + L1ME3 LINE L1 5449 5951 -211 804 157 50 0 chr12 8460864 8460985 -135325470 + AluSp SINE Alu 123 249 -64 354 91 18 0 chr12 8461060 8461115 -135325340 + AluSp SINE Alu 242 297 -6 425 268 45 62 chr12 8461431 8461610 -135324845 - MIR SINE MIR -50 212 37 495 195 219 18 chr12 8461671 8461835 -135324620 - MIR SINE MIR 0 262 66 1828 154 18 89 chr12 8462024 8462340 -135324115 - MER82 DNA MER2_type -157 496 210 2146 79 36 0 chr12 8462340 8462618 -135323837 + AluSq SINE Alu 1 288 -25 1828 154 18 89 chr12 8462618 8462684 -135323771 - MER82 DNA MER2_type -443 210 141 1109 138 0 0 chr12 8462684 8462844 -135323611 + AluSg/x SINE Alu 135 294 -16 429 276 141 25 chr12 8462932 8463131 -135323324 + MIR SINE MIR 17 238 -24 2356 86 0 10 chr12 8463293 8463597 -135322858 + AluSc SINE Alu 2 302 -7 1304 119 5 0 chr12 8463772 8463957 -135322498 - AluSg/x SINE Alu -2 310 125 1976 168 89 51 chr12 8464090 8464561 -135321894 - LTR2B LTR ERV1 0 490 2 21 71 0 0 chr12 8464834 8464876 -135321579 + AT_rich Low_complexity Low_complexity 1 42 0 281 263 91 10 chr12 8465135 8465234 -135321221 - MIR SINE MIR 0 262 156 1862 130 68 10 chr12 8465323 8465616 -135320839 + AluJo SINE Alu 1 310 -2 203 0 0 36 chr12 8465832 8465860 -135320595 + (CTG)n Simple_repeat Simple_repeat 1 27 0 1804 160 17 3 chr12 8466019 8466319 -135320136 - AluJb SINE Alu 0 312 9 2421 60 3 22 chr12 8466329 8466644 -135319811 - AluY SINE Alu -2 309 1 383 253 48 84 chr12 8466858 8467024 -135319431 - MIR SINE MIR -40 168 9 425 302 44 28 chr12 8467131 8467313 -135319142 - MIR3 SINE MIR -1 207 23 1132 103 0 7 chr12 8467956 8468102 -135318353 - AluSq/x SINE Alu -168 145 1 237 252 156 45 chr12 8468601 8468809 -135317646 + L1ME4a LINE L1 5549 5781 -340 2307 99 0 3 chr12 8468833 8469136 -135317319 + AluSq SINE Alu 1 302 -11 28 48 0 0 chr12 8469324 8469366 -135317089 + AT_rich Low_complexity Low_complexity 1 42 0 361 278 17 80 chr12 8469470 8469591 -135316864 + L1ME4a LINE L1 5835 5962 -159 1918 145 0 7 chr12 8469591 8469887 -135316568 + AluSx SINE Alu 1 294 -18 361 278 17 80 chr12 8469887 8470064 -135316391 + L1ME4a LINE L1 5962 6114 -7 216 156 44 0 chr12 8470438 8470483 -135315972 + (CCTA)n Simple_repeat Simple_repeat 2 48 0 319 283 147 23 chr12 8471359 8471617 -135314838 - L1M4 LINE L1 -2961 3185 2896 2322 91 0 10 chr12 8471875 8472183 -135314272 - AluSx SINE Alu -7 305 1 757 179 0 22 chr12 8472539 8472655 -135313800 + FLAM_C SINE Alu 2 116 -196 216 0 0 0 chr12 8472655 8472679 -135313776 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 757 179 0 22 chr12 8472679 8472696 -135313759 + FLAM_C SINE Alu 116 132 -180 238 281 47 0 chr12 8472696 8472760 -135313695 + MIR3 SINE MIR 142 208 0 2129 113 13 0 chr12 8472839 8473141 -135313314 - AluSp SINE Alu -7 306 1 1984 144 7 0 chr12 8473457 8473762 -135312693 - AluSx SINE Alu -5 307 1 2269 92 0 0 chr12 8474296 8474602 -135311853 + AluSg SINE Alu 1 306 -4 2237 71 3 16 chr12 8474603 8474913 -135311542 + AluSp SINE Alu 1 306 -7 749 167 24 0 chr12 8475091 8475217 -135311238 + FLAM_C SINE Alu 5 133 0 2601 158 30 2 chr12 8475305 8475779 -135310676 + L1MB2 LINE L1 5682 6168 -3 1611 163 11 3 chr12 8475791 8476097 -135310358 + AluSx SINE Alu 1 308 0 320 255 112 0 chr12 8476177 8476338 -135310117 + L1ME4a LINE L1 5938 6116 -5 2101 99 0 0 chr12 8476861 8477144 -135309311 + AluSx SINE Alu 5 287 -25 30 0 0 0 chr12 8477144 8477174 -135309281 + AT_rich Low_complexity Low_complexity 1 30 0 820 190 67 11 chr12 8478929 8479108 -135307347 + MER5A DNA MER1_type 1 189 0 515 262 81 57 chr12 8479908 8480156 -135306299 - HAL1 LINE L1 -2 2505 2252 2139 98 0 30 chr12 8481116 8481421 -135305034 - AluSg SINE Alu -14 296 1 2020 127 3 0 chr12 8481427 8481719 -135304736 - AluSq SINE Alu -20 293 1 199 258 57 105 chr12 8482389 8482513 -135303942 - MIR SINE MIR -60 148 31 233 29 29 0 chr12 8484448 8484482 -135301973 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2011 117 14 0 chr12 8485035 8485326 -135301129 + AluY SINE Alu 2 296 -15 1921 120 3 23 chr12 8485384 8485683 -135300772 + AluSx SINE Alu 1 293 -19 1926 136 3 0 chr12 8486122 8486417 -135300038 + AluSx SINE Alu 1 296 -16 1028 41 0 63 chr12 8486418 8486733 -135299722 + (GGGAA)n Simple_repeat Simple_repeat 1 295 0 1724 169 0 23 chr12 8487276 8487584 -135298871 + AluJb SINE Alu 1 301 -11 255 331 11 19 chr12 8488376 8488507 -135297948 - MIR SINE MIR -65 143 27 213 163 0 0 chr12 8489568 8489617 -135296838 + (CTG)n Simple_repeat Simple_repeat 1 49 0 2236 79 14 0 chr12 8490089 8490381 -135296074 - AluSp SINE Alu -17 296 1 445 274 65 50 chr12 8490960 8491281 -135295174 + L1MC5 LINE L1 7603 7928 -33 2143 105 0 7 chr12 8491593 8491897 -135294558 + AluSq SINE Alu 1 302 -11 1990 134 0 13 chr12 8491900 8492036 -135294419 + AluSx SINE Alu 1 137 -175 2259 85 10 3 chr12 8492036 8492341 -135294114 + AluSx SINE Alu 1 307 -5 1990 134 0 13 chr12 8492341 8492511 -135293944 + AluSx SINE Alu 137 303 -9 1411 160 144 0 chr12 8492995 8493258 -135293197 - AluSx SINE Alu 0 302 2 210 302 0 0 chr12 8493294 8493347 -135293108 + CT-rich Low_complexity Low_complexity 1 53 0 214 279 115 0 chr12 8494073 8494134 -135292321 + MIR SINE MIR 86 153 -109 2274 98 0 3 chr12 8494313 8494618 -135291837 - AluSq SINE Alu -9 304 1 2179 107 0 0 chr12 8495374 8495672 -135290783 + AluSq SINE Alu 1 298 -15 1656 188 13 0 chr12 8495742 8496040 -135290415 + AluJo SINE Alu 1 302 -10 1771 127 11 21 chr12 8496044 8496327 -135290128 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr12 8496341 8496364 -135290091 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 268 233 0 0 chr12 8496736 8496796 -135289659 + L2 LINE L2 3254 3313 0 2062 122 0 3 chr12 8496831 8497127 -135289328 + AluSg SINE Alu 1 295 -15 2030 122 0 0 chr12 8500429 8500745 -135285710 - AluSx SINE Alu 0 316 1 238 197 175 43 chr12 8501346 8501484 -135284971 + MIR SINE MIR 13 262 0 198 103 0 0 chr12 8503900 8503929 -135282526 + (GGA)n Simple_repeat Simple_repeat 1 29 0 257 232 20 20 chr12 8504822 8504921 -135281534 + C-rich Low_complexity Low_complexity 2 100 0 2168 66 3 78 chr12 8505587 8505919 -135280536 - AluSg SINE Alu -3 307 1 593 188 23 30 chr12 8505981 8506114 -135280341 - FLAM_C SINE Alu -1 132 1 1943 99 41 3 chr12 8506148 8506442 -135280013 + AluSx SINE Alu 1 305 -7 1165 102 12 0 chr12 8506442 8506608 -135279847 + AluSg/x SINE Alu 132 299 -11 619 315 94 9 chr12 8506707 8506920 -135279535 - MIR SINE MIR -26 236 6 416 223 39 23 chr12 8507268 8507398 -135279057 + L1ME LINE L1 5692 5823 -298 679 241 18 12 chr12 8508059 8508225 -135278230 + MIR SINE MIR 59 225 -37 538 183 183 49 chr12 8508283 8508546 -135277909 + L1MC5 LINE L1 7518 7815 -146 2123 103 10 0 chr12 8508598 8508890 -135277565 + AluSx SINE Alu 1 295 -17 1967 113 7 7 chr12 8508960 8509252 -135277203 + AluSg SINE Alu 1 292 -18 278 265 112 0 chr12 8509366 8509464 -135276991 - MIR SINE MIR -41 221 113 2516 39 0 7 chr12 8509847 8510157 -135276298 - AluY SINE Alu -3 308 1 1903 104 47 17 chr12 8511506 8511804 -135274651 - AluSx SINE Alu 0 312 6 183 296 45 0 chr12 8511822 8511866 -135274589 + L2 LINE L2 3244 3289 -24 669 91 4 6 chr12 8511915 8512158 -135274297 + AluSx SINE Alu 2 293 -17 1959 109 31 7 chr12 8512539 8512832 -135273623 - AluSc SINE Alu -9 300 1 2328 77 0 22 chr12 8514144 8514457 -135271998 + AluSx SINE Alu 2 307 -5 863 180 6 6 chr12 8514777 8514933 -135271522 + AluJb SINE Alu 140 298 -14 461 203 106 32 chr12 8514933 8515056 -135271399 + FLAM_A SINE Alu 1 132 -1 1249 163 108 59 chr12 8515340 8515628 -135270827 + AluJo SINE Alu 1 302 0 247 281 45 34 chr12 8515767 8515856 -135270599 + MIR SINE MIR 38 127 -81 2028 104 4 0 chr12 8515909 8516188 -135270267 + AluSx SINE Alu 1 280 -32 219 36 0 0 chr12 8516189 8516217 -135270238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2297 92 0 3 chr12 8516222 8516528 -135269927 + AluSg SINE Alu 1 305 -5 811 227 152 12 chr12 8516798 8517054 -135269401 - L1ME3A LINE L1 -53 6117 5826 1885 148 3 0 chr12 8517072 8517376 -135269079 - AluSg SINE Alu -5 305 1 791 185 7 0 chr12 8517378 8517513 -135268942 - FRAM SINE Alu -18 158 23 1622 199 55 81 chr12 8517521 8518014 -135268441 - L1ME3A LINE L1 -348 5822 5343 22 0 0 0 chr12 8518819 8518841 -135267614 + GC_rich Low_complexity Low_complexity 1 22 0 1948 97 0 17 chr12 8519036 8519354 -135267101 - AluSg1 SINE Alu 0 313 1 2112 58 14 7 chr12 8519386 8519662 -135266793 + AluSp SINE Alu 1 278 -35 22 35 0 0 chr12 8520560 8520589 -135265866 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr12 8520801 8520841 -135265614 + AT_rich Low_complexity Low_complexity 1 40 0 2254 79 3 10 chr12 8520841 8521145 -135265310 + AluSp SINE Alu 1 302 -11 2203 93 7 0 chr12 8521583 8521884 -135264571 - AluSq SINE Alu -10 303 1 246 216 149 27 chr12 8522623 8522697 -135263758 - MIR3 SINE MIR -4 204 122 2128 93 10 7 chr12 8523478 8523654 -135262801 - AluSc SINE Alu -7 302 123 189 0 0 0 chr12 8523654 8523675 -135262780 + (TG)n Simple_repeat Simple_repeat 2 22 0 2128 93 10 7 chr12 8523675 8523799 -135262656 - AluSc SINE Alu -186 123 1 1036 82 0 0 chr12 8523799 8523934 -135262521 - AluSq/x SINE Alu -177 135 1 1850 128 14 14 chr12 8523994 8524342 -135262113 - AluSq SINE Alu 0 313 1 993 89 13 19 chr12 8524734 8524892 -135261563 + BC200 scRNA scRNA 6 162 -38 1194 124 0 0 chr12 8525086 8525263 -135261192 - AluSg/x SINE Alu -1 311 135 267 31 0 0 chr12 8525263 8525295 -135261160 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1773 142 3 3 chr12 8525295 8525577 -135260878 - AluSp SINE Alu -27 286 5 2419 77 0 0 chr12 8525609 8525920 -135260535 - AluSx SINE Alu -1 311 1 232 258 97 0 chr12 8525993 8526055 -135260400 - L2 LINE L2 0 3313 3246 5510 110 8 41 chr12 8526166 8526367 -135260088 - Tigger1 DNA MER2_type 0 2418 2212 1927 126 0 17 chr12 8526367 8526669 -135259786 + AluSx SINE Alu 1 297 -15 2161 88 3 3 chr12 8526672 8526969 -135259486 + AluSx SINE Alu 1 297 -15 2220 74 0 0 chr12 8526971 8527297 -135259158 + AluY SINE Alu 1 326 0 5510 110 8 41 chr12 8527297 8527475 -135258980 - Tigger1 DNA MER2_type -209 2209 2027 2137 97 0 31 chr12 8527475 8527794 -135258661 + AluY SINE Alu 1 309 -2 5510 110 8 41 chr12 8527794 8528276 -135258179 - Tigger1 DNA MER2_type -391 2027 1577 372 194 0 14 chr12 8528305 8528377 -135258078 - AluJb SINE Alu 0 302 232 969 155 0 133 chr12 8528431 8528695 -135257760 - AluJb SINE Alu -83 229 1 2070 147 43 3 chr12 8528695 8529021 -135257434 - Tigger1 DNA MER2_type -830 1588 1250 335 85 34 0 chr12 8529022 8529081 -135257374 + L1MA3 LINE L1 5310 5370 -935 * 2419 109 3 22 chr12 8529078 8529167 -135257288 + L1MA3 LINE L1 5695 5784 -521 396 59 0 0 chr12 8529167 8529218 -135257237 + (TG)n Simple_repeat Simple_repeat 2 52 0 2419 109 3 22 chr12 8529218 8529495 -135256960 + L1MA3 LINE L1 5784 6054 -251 1340 135 0 5 chr12 8529495 8529695 -135256760 + AluSg/x SINE Alu 85 283 -27 1587 117 32 0 chr12 8529704 8529953 -135256502 + L1MA3 LINE L1 6046 6302 -3 812 152 0 0 chr12 8529953 8530078 -135256377 - FLAM_C SINE Alu -18 125 1 25 0 0 0 chr12 8530084 8530109 -135256346 + AT_rich Low_complexity Low_complexity 1 25 0 6991 128 66 32 chr12 8530111 8530549 -135255906 - Tigger1 DNA MER2_type -1159 1259 837 2201 93 10 3 chr12 8530549 8530849 -135255606 + AluSx SINE Alu 1 302 -10 6991 128 66 32 chr12 8530849 8530915 -135255540 - Tigger1 DNA MER2_type -1581 837 775 2234 96 3 0 chr12 8530915 8531217 -135255238 - AluSp SINE Alu -10 303 1 2120 119 0 10 chr12 8531217 8531528 -135254927 - AluSq SINE Alu -4 309 1 6991 128 66 32 chr12 8531528 8532239 -135254216 - Tigger1 DNA MER2_type -1642 776 1 462 263 42 0 chr12 8532239 8532357 -135254098 - L2 LINE L2 -251 3062 2940 2805 91 77 12 chr12 8532357 8532397 -135254058 - MLT2A1 LTR ERVL 0 444 408 674 34 11 0 chr12 8532397 8532486 -135253969 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2805 91 77 12 chr12 8532486 8532862 -135253593 - MLT2A1 LTR ERVL -36 408 1 16867 120 36 81 chr12 8532862 8532937 -135253518 - ERVL-A1 LTR ERVL -7 5757 5680 2284 65 14 0 chr12 8532937 8533228 -135253227 + AluY SINE Alu 1 295 -16 16867 120 36 81 chr12 8533228 8533405 -135253050 - ERVL-A1 LTR ERVL -84 5680 5497 2244 83 10 0 chr12 8533405 8533706 -135252749 - AluSp SINE Alu -9 304 1 16867 120 36 81 chr12 8533706 8533844 -135252611 - ERVL-A1 LTR ERVL -267 5497 5354 2173 82 3 30 chr12 8533844 8534147 -135252308 - AluSg SINE Alu -15 295 1 16867 120 36 81 chr12 8534147 8534932 -135251523 - ERVL-A1 LTR ERVL -410 5354 4536 1259 101 0 0 chr12 8534932 8535110 -135251345 - AluSg/x SINE Alu 0 312 135 2163 81 0 3 chr12 8535110 8535394 -135251061 - AluSx SINE Alu -10 302 20 16867 120 36 81 chr12 8535394 8536994 -135249461 - ERVL-A1 LTR ERVL -1226 4538 2932 1001 89 7 0 chr12 8536994 8537129 -135249326 + AluSq/x SINE Alu 1 136 -177 1905 83 0 74 chr12 8537129 8537278 -135249177 + AluSg SINE Alu 1 117 -193 2070 122 3 3 chr12 8537278 8537582 -135248873 + AluSp SINE Alu 1 304 -9 1905 83 0 74 chr12 8537582 8537744 -135248711 + AluSg SINE Alu 117 289 -21 15723 69 3 24 chr12 8537744 8537979 -135248476 - ERVL-A1 LTR ERVL -2752 2902 2664 2596 39 0 0 chr12 8537979 8538290 -135248165 + AluY SINE Alu 1 311 0 15723 69 3 24 chr12 8538290 8539100 -135247355 - ERVL-A1 LTR ERVL -2990 2664 1839 2369 86 0 0 chr12 8539100 8539402 -135247053 + AluSg SINE Alu 1 302 -8 15723 69 3 24 chr12 8539402 8539889 -135246566 - ERVL-A1 LTR ERVL -3815 1839 1419 2028 91 6 70 chr12 8539889 8540220 -135246235 + AluSg SINE Alu 1 310 0 15723 69 3 24 chr12 8540220 8540704 -135245751 - ERVL-A1 LTR ERVL -4235 1419 926 718 111 0 0 chr12 8540704 8540803 -135245652 - AluSx SINE Alu -28 282 184 799 174 0 0 chr12 8540809 8540941 -135245514 - AluSx SINE Alu -179 133 2 1169 309 83 23 chr12 8540943 8541198 -135245257 - L2 LINE L2 -2192 1122 884 2271 93 0 0 chr12 8541198 8541498 -135244957 - AluSg1 SINE Alu -9 300 1 1169 309 83 23 chr12 8541498 8541759 -135244696 - L2 LINE L2 -2430 884 575 23 0 0 0 chr12 8542980 8543003 -135243452 + AT_rich Low_complexity Low_complexity 1 23 0 695 100 0 64 chr12 8543024 8543134 -135243321 - AluSg/x SINE Alu -17 295 193 317 257 57 0 chr12 8543234 8543304 -135243151 - MER91A DNA MER1_type 0 196 123 272 313 202 0 chr12 8543315 8543414 -135243041 - MER91A DNA MER1_type -20 176 58 380 257 135 0 chr12 8543515 8543663 -135242792 - Charlie2a DNA MER1_type -1224 1638 1471 1944 91 58 0 chr12 8543690 8543964 -135242491 - AluSq SINE Alu -18 295 6 581 293 16 42 chr12 8543983 8544174 -135242281 + MER5A DNA MER1_type 1 186 -3 2172 73 17 7 chr12 8544334 8544635 -135241820 - AluY SINE Alu -7 304 1 619 163 0 23 chr12 8544736 8544865 -135241590 - MER53 DNA DNA -63 126 1 2190 99 0 16 chr12 8545028 8545342 -135241113 - AluSc SINE Alu 0 309 1 196 304 54 0 chr12 8546284 8546340 -135240115 + L2 LINE L2 3209 3267 -5 196 328 150 52 chr12 8546610 8546723 -135239732 + L2 LINE L2 2655 2756 -558 2159 83 31 0 chr12 8546723 8547012 -135239443 + AluSx SINE Alu 1 298 -14 196 328 150 52 chr12 8547012 8547185 -135239270 + L2 LINE L2 2756 2969 -345 233 337 14 100 chr12 8547507 8547786 -135238669 - L2 LINE L2 -360 2954 2700 23 0 0 0 chr12 8547832 8547855 -135238600 + AT_rich Low_complexity Low_complexity 1 23 0 279 252 32 41 chr12 8547855 8547978 -135238477 - L1ME4a LINE L1 -64 6057 5936 1964 116 20 3 chr12 8547987 8548288 -135238167 - AluSp SINE Alu -5 308 3 1804 161 3 0 chr12 8548336 8548628 -135237827 + AluSx SINE Alu 6 298 -14 1617 185 7 7 chr12 8548632 8548929 -135237526 + AluJb SINE Alu 1 297 -15 2246 62 24 0 chr12 8548931 8549220 -135237235 + AluY SINE Alu 1 296 -15 255 246 120 113 chr12 8549362 8549611 -135236844 + L1MC4a LINE L1 5428 5492 -680 1605 192 4 0 chr12 8549611 8549892 -135236563 + AluSx SINE Alu 1 282 -30 255 246 120 113 chr12 8549892 8550148 -135236307 + L1MC4a LINE L1 5492 5745 -427 2391 72 0 0 chr12 8550246 8550553 -135235902 - AluY SINE Alu -4 307 1 1095 203 147 15 chr12 8550553 8550819 -135235636 - AluSx SINE Alu -1 301 1 2183 104 3 0 chr12 8550851 8551158 -135235297 - AluSq SINE Alu -5 308 1 317 241 23 35 chr12 8551165 8551252 -135235203 - L1MC4a LINE L1 -1959 5849 5764 2012 110 0 36 chr12 8551256 8551565 -135234890 - AluSx SINE Alu -14 298 1 605 314 41 29 chr12 8551566 8551811 -135234644 - L2 LINE L2 -793 2521 2274 265 91 0 0 chr12 8551811 8551844 -135234611 + U2 snRNA snRNA 1 33 -155 525 263 109 76 chr12 8551868 8552081 -135234374 - L3 LINE CR1 -120 1457 1230 2161 108 7 0 chr12 8552081 8552386 -135234069 - AluSp SINE Alu -4 309 3 525 263 109 76 chr12 8552386 8552476 -135233979 - L3 LINE CR1 -347 1230 1144 21 0 0 0 chr12 8552608 8552629 -135233826 + AT_rich Low_complexity Low_complexity 1 21 0 1016 137 0 0 chr12 8552634 8552787 -135233668 - AluSx SINE Alu -158 154 2 2095 117 7 0 chr12 8552849 8553149 -135233306 - AluSq SINE Alu -6 307 6 1874 130 0 38 chr12 8553286 8553602 -135232853 + AluSq SINE Alu 1 304 -9 290 260 39 0 chr12 8553744 8553821 -135232634 - L3 LINE CR1 -1081 496 417 986 228 25 0 chr12 8553827 8554024 -135232431 + MER20 DNA MER1_type 1 202 -17 217 281 120 60 chr12 8554035 8554138 -135232317 - L3 LINE CR1 -1157 420 302 2033 94 49 0 chr12 8554138 8554426 -135232029 - AluSp SINE Alu -11 302 1 217 281 120 60 chr12 8554426 8554489 -135231966 - L3 LINE CR1 -1275 302 244 2103 117 0 3 chr12 8555526 8555825 -135230630 + AluSq SINE Alu 1 298 -15 876 102 23 0 chr12 8556262 8556390 -135230065 + AluSq/x SINE Alu 6 136 -176 2168 99 0 3 chr12 8556391 8556693 -135229762 + AluSg SINE Alu 1 301 -9 24 32 0 0 chr12 8556693 8556724 -135229731 + AT_rich Low_complexity Low_complexity 1 31 0 2079 100 3 3 chr12 8556944 8557245 -135229210 - AluSq SINE Alu -8 305 5 1195 89 0 0 chr12 8557266 8557434 -135229021 - AluY SINE Alu -10 301 134 2071 100 3 3 chr12 8557463 8557763 -135228692 - AluSq SINE Alu -9 304 5 2227 82 0 7 chr12 8557784 8558087 -135228368 - AluY SINE Alu -10 301 1 189 0 0 0 chr12 8558204 8558225 -135228230 + (T)n Simple_repeat Simple_repeat 1 21 0 2035 117 3 7 chr12 8558425 8558734 -135227721 + AluY SINE Alu 1 308 -3 1386 174 79 4 chr12 8558774 8559027 -135227428 - AluJb SINE Alu -38 274 3 2226 92 0 0 chr12 8559320 8559615 -135226840 + AluY SINE Alu 1 295 -16 2232 67 0 42 chr12 8560076 8560389 -135226066 - AluY SINE Alu -11 300 1 2350 81 3 0 chr12 8560841 8561149 -135225306 - AluSp SINE Alu -4 309 1 670 150 0 0 chr12 8561193 8561293 -135225162 - HY3 scRNA scRNA -1 100 1 222 118 0 0 chr12 8561526 8561560 -135224895 + (T)n Simple_repeat Simple_repeat 1 34 0 1849 131 7 7 chr12 8561626 8561917 -135224538 - AluSx SINE Alu -21 291 1 2239 98 0 0 chr12 8561947 8562242 -135224213 - AluSg SINE Alu -13 297 3 433 164 0 0 chr12 8562243 8562316 -135224139 - MER5A DNA MER1_type -115 74 2 2076 104 0 7 chr12 8562412 8562709 -135223746 + AluSg SINE Alu 2 296 -14 310 209 291 0 chr12 8562815 8562901 -135223554 + MER81 DNA DNA 1 111 -3 2345 71 0 0 chr12 8563017 8563311 -135223144 + AluY SINE Alu 1 294 -17 298 333 52 46 chr12 8563319 8563472 -135222983 + MIR SINE MIR 84 237 -25 2061 110 0 10 chr12 8563537 8563837 -135222618 + AluSx SINE Alu 1 297 -15 1108 216 113 12 chr12 8563840 8564168 -135222287 + L1ME3 LINE L1 5621 5981 -181 1108 119 0 6 chr12 8564170 8564338 -135222117 + AluSg/x SINE Alu 135 301 -11 1780 104 16 49 chr12 8564429 8564737 -135221718 + AluSx SINE Alu 2 299 -13 305 279 0 0 chr12 8564767 8564853 -135221602 + L1ME3 LINE L1 6046 6131 -31 935 92 15 0 chr12 8565746 8565877 -135220578 + L1MA1 LINE L1 6164 6296 -6 303 282 20 54 chr12 8566151 8566223 -135220232 + L1ME2 LINE L1 6021 6087 -77 180 0 0 0 chr12 8566223 8566243 -135220212 + (GA)n Simple_repeat Simple_repeat 1 20 0 303 282 20 54 chr12 8566243 8566319 -135220136 + L1ME2 LINE L1 6087 6164 0 2210 91 0 7 chr12 8567003 8567312 -135219143 + AluSx SINE Alu 1 307 -5 1987 103 23 26 chr12 8567456 8567766 -135218689 + AluSx SINE Alu 4 312 0 2168 115 0 3 chr12 8567967 8568279 -135218176 + AluSx SINE Alu 1 311 -1 845 201 6 136 chr12 8568321 8568520 -135217935 - AluJo SINE Alu -17 295 72 194 0 0 37 chr12 8568520 8568547 -135217908 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1877 111 0 21 chr12 8568550 8568700 -135217755 - AluSp SINE Alu -30 283 140 2272 84 0 13 chr12 8568700 8569009 -135217446 - AluSg SINE Alu -4 306 2 1877 111 0 21 chr12 8569009 8569147 -135217308 - AluSp SINE Alu -173 140 1 845 201 6 136 chr12 8569147 8569282 -135217173 - AluJo SINE Alu -242 70 1 553 180 0 0 chr12 8569308 8569397 -135217058 - AluJ/FLAM SINE Alu -222 90 2 519 179 98 49 chr12 8569458 8569581 -135216874 + FLAM_C SINE Alu 2 130 -3 2146 93 3 7 chr12 8569588 8569879 -135216576 + AluSx SINE Alu 3 292 -20 718 205 0 0 chr12 8569920 8570042 -135216413 + FLAM_C SINE Alu 1 122 -11 257 197 0 49 chr12 8570049 8570107 -135216348 + AluYa5 SINE Alu 127 181 -120 1478 149 45 80 chr12 8570107 8570267 -135216188 + THE1C LTR MaLR 1 165 -263 2583 42 0 0 chr12 8570267 8570576 -135215879 + AluY SINE Alu 1 309 -2 1478 149 45 80 chr12 8570576 8570728 -135215727 + THE1C LTR MaLR 165 354 -74 1981 101 17 0 chr12 8570728 8571015 -135215440 - AluSg SINE Alu -14 296 5 1478 149 45 80 chr12 8571015 8571061 -135215394 + THE1C LTR MaLR 354 400 -28 1885 136 14 14 chr12 8571062 8571357 -135215098 - AluSx SINE Alu -17 295 1 219 32 32 0 chr12 8571369 8571400 -135215055 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2279 62 0 3 chr12 8571400 8571688 -135214767 - AluSq SINE Alu -1 317 1 258 167 0 0 chr12 8571689 8571731 -135214724 + THE1C LTR MaLR 385 426 -2 770 126 17 0 chr12 8571735 8571854 -135214601 + AluJb SINE Alu 181 301 -11 28 0 0 0 chr12 8571855 8571883 -135214572 + AT_rich Low_complexity Low_complexity 1 28 0 1166 80 0 0 chr12 8572208 8572389 -135214066 - AluSg/x SINE Alu 0 314 134 1988 113 10 10 chr12 8572514 8572823 -135213632 - AluSq SINE Alu -4 309 1 2078 112 3 3 chr12 8573218 8573521 -135212934 - AluSx SINE Alu -9 303 1 1451 199 33 33 chr12 8573760 8574096 -135212359 - MER58B DNA MER1_type -5 336 1 2244 82 0 10 chr12 8574495 8574801 -135211654 - AluSg SINE Alu -7 303 1 219 287 200 0 chr12 8574884 8574999 -135211456 + MIR SINE MIR 61 198 -64 2157 109 3 0 chr12 8575158 8575461 -135210994 + AluSx SINE Alu 6 309 -3 202 361 17 25 chr12 8575476 8575595 -135210860 + L2 LINE L2 3178 3295 -18 1680 143 13 27 chr12 8575903 8576203 -135210252 + AluJb SINE Alu 15 310 -2 2504 49 0 3 chr12 8576846 8577152 -135209303 - AluY SINE Alu -6 305 1 1221 185 49 15 chr12 8577934 8578199 -135208256 - AluJo SINE Alu -33 279 6 1606 119 105 35 chr12 8578396 8578681 -135207774 + AluSx SINE Alu 1 305 -7 294 29 0 0 chr12 8578959 8578993 -135207462 + U2 snRNA snRNA 3 36 -152 3501 134 103 35 chr12 8579012 8579557 -135206898 + L1MC2 LINE L1 5609 6116 -228 1943 111 0 0 chr12 8579557 8579827 -135206628 + AluSx SINE Alu 1 270 -42 342 0 0 0 chr12 8579832 8579870 -135206585 + (TC)n Simple_repeat Simple_repeat 2 39 0 * 1098 96 0 0 chr12 8579869 8580026 -135206429 + (TA)n Simple_repeat Simple_repeat 2 158 0 3501 134 103 35 chr12 8579870 8580155 -135206300 + L1MC2 LINE L1 6119 6335 -9 1809 139 3 10 chr12 8580234 8580529 -135205926 - AluSq SINE Alu -20 293 1 865 266 176 3 chr12 8580604 8580893 -135205562 + L2 LINE L2 2320 2658 -656 1995 88 34 20 chr12 8580934 8581060 -135205395 + AluSq SINE Alu 1 124 -189 2409 64 0 10 chr12 8581060 8581374 -135205081 + AluY SINE Alu 1 311 0 1995 88 34 20 chr12 8581374 8581542 -135204913 + AluSq SINE Alu 124 299 -14 1493 171 0 56 chr12 8581560 8581881 -135204574 - AluJo SINE Alu -9 303 1 630 179 4 94 chr12 8581881 8581963 -135204492 - MSTC LTR MaLR -207 158 70 2646 29 0 0 chr12 8581963 8582271 -135204184 - AluY SINE Alu -3 308 1 2307 64 7 0 chr12 8582271 8582568 -135203887 - AluSp SINE Alu -13 300 1 630 179 4 94 chr12 8582568 8582651 -135203804 - MSTC LTR MaLR -293 72 1 583 304 80 51 chr12 8582651 8583150 -135203305 + L2 LINE L2 2656 3156 -157 2058 160 34 16 chr12 8583151 8583532 -135202923 - MLT1B LTR MaLR -2 388 1 1654 169 34 62 chr12 8583538 8583610 -135202845 - MLT1B-int LTR MaLR -5 1730 1657 2467 36 0 19 chr12 8583610 8583919 -135202536 - AluY SINE Alu -7 304 2 1654 169 34 62 chr12 8583919 8584200 -135202255 - MLT1B-int LTR MaLR -78 1657 1387 2109 123 0 0 chr12 8584205 8584507 -135201948 - AluSx SINE Alu -10 302 1 2438 53 7 0 chr12 8584528 8584831 -135201624 - AluY SINE Alu -6 305 1 2187 188 137 19 chr12 8584834 8585203 -135201252 - MLT1B-int LTR MaLR -711 660 336 185 62 0 31 chr12 8585203 8585235 -135201220 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2187 188 137 19 chr12 8585235 8585309 -135201146 - MLT1B-int LTR MaLR -1035 336 272 2059 106 3 0 chr12 8585309 8585613 -135200842 - AluSp SINE Alu 0 305 1 2187 188 137 19 chr12 8585613 8585757 -135200698 - MLT1B-int LTR MaLR -1099 272 1 360 0 0 0 chr12 8585839 8585879 -135200576 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2080 96 3 7 chr12 8585881 8586174 -135200281 - AluSx SINE Alu -20 292 1 1695 193 14 43 chr12 8586174 8586452 -135200003 - MLT2D LTR ERVL -72 342 75 2247 58 14 10 chr12 8586452 8586777 -135199678 - AluSp SINE Alu 0 313 2 1695 193 14 43 chr12 8586777 8586850 -135199605 - MLT2D LTR ERVL -339 75 1 1213 161 13 113 chr12 8586879 8587190 -135199265 + AluJo SINE Alu 5 284 -28 2205 111 0 0 chr12 8587190 8587488 -135198967 - AluSx SINE Alu -14 298 1 229 368 47 0 chr12 8587493 8587599 -135198856 + MIR SINE MIR 96 206 -56 740 154 0 0 chr12 8587667 8587777 -135198678 - AluJo SINE Alu -176 136 27 497 91 15 0 chr12 8587802 8587889 -135198566 - AluY SINE Alu 0 304 217 225 313 0 0 chr12 8587889 8587953 -135198502 + L2 LINE L2 3241 3304 -9 1629 127 8 0 chr12 8587957 8588201 -135198254 + AluSg SINE Alu 60 305 -5 2294 76 0 13 chr12 8588971 8589272 -135197183 + AluY SINE Alu 1 297 -14 1807 96 69 0 chr12 8589289 8589550 -135196905 + AluSc SINE Alu 11 289 -20 1684 148 44 0 chr12 8589599 8589897 -135196558 + AluSx SINE Alu 1 311 -1 1669 168 27 0 chr12 8589925 8590223 -135196232 + AluJb SINE Alu 1 306 -6 396 141 43 11 chr12 8590223 8590315 -135196140 + GA-rich Low_complexity Low_complexity 2 96 0 220 372 100 46 chr12 8590541 8590802 -135195653 - L2 LINE L2 -52 3220 2946 2095 115 3 13 chr12 8590996 8591309 -135195146 - AluSq SINE Alu -3 310 1 1627 155 7 4 chr12 8591375 8591646 -135194809 - AluJb SINE Alu -4 308 37 683 200 7 22 chr12 8592095 8592230 -135194225 + AluJo SINE Alu 2 134 -178 1924 96 4 0 chr12 8592385 8592655 -135193800 - AluSx SINE Alu -8 304 34 707 180 32 132 chr12 8592685 8592851 -135193604 + LTR56 LTR ERV1 20 154 -291 510 178 168 0 chr12 8592851 8592958 -135193497 + FLAM_A SINE Alu 4 128 -5 707 180 32 132 chr12 8592958 8593041 -135193414 + LTR56 LTR ERV1 154 244 -201 2190 99 3 0 chr12 8593041 8593334 -135193121 - AluSx SINE Alu -18 294 1 570 151 0 0 chr12 8593334 8593420 -135193035 - AluS SINE Alu -226 87 2 844 206 0 76 chr12 8593576 8593638 -135192817 + AluJb SINE Alu 89 154 -158 2014 96 39 0 chr12 8593638 8593919 -135192536 + AluSp SINE Alu 7 298 -15 844 206 0 76 chr12 8593919 8594094 -135192361 + AluJb SINE Alu 154 308 -4 2290 65 0 3 chr12 8594355 8594647 -135191808 + AluSc SINE Alu 1 291 -18 1734 50 27 0 chr12 8594726 8594947 -135191508 + L1PA5 LINE L1 5926 6152 -2 1638 168 10 14 chr12 8594963 8595254 -135191201 + AluJo SINE Alu 1 290 -22 367 281 114 52 chr12 8595418 8595628 -135190827 - MIR SINE MIR -37 225 3 888 241 26 44 chr12 8595787 8596015 -135190440 + MER58A DNA MER1_type 1 224 0 1865 152 3 7 chr12 8596515 8596817 -135189638 - AluSx SINE Alu -11 301 1 2140 69 22 4 chr12 8596826 8597139 -135189316 - AluY SINE Alu 0 318 1 26 30 0 0 chr12 8597212 8597245 -135189210 + AT_rich Low_complexity Low_complexity 1 33 0 229 275 38 23 chr12 8597315 8597446 -135189009 - L1MDa LINE L1 -4989 1541 1409 2105 76 0 73 chr12 8597447 8597764 -135188691 - AluSg SINE Alu -16 294 1 325 272 44 20 chr12 8597771 8597890 -135188565 - L1MDa LINE L1 -5135 1408 1285 2241 83 10 0 chr12 8597939 8598241 -135188214 - AluSg SINE Alu -5 305 1 2177 116 0 0 chr12 8598242 8598543 -135187912 - AluSx SINE Alu -9 303 3 1948 136 0 3 chr12 8598546 8598847 -135187608 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 8598892 8598915 -135187540 + AT_rich Low_complexity Low_complexity 1 23 0 2057 119 10 0 chr12 8598918 8599213 -135187242 + AluSx SINE Alu 1 298 -14 236 273 91 23 chr12 8599236 8599324 -135187131 - L1MDa LINE L1 -5490 1040 947 261 233 105 23 chr12 8599488 8599574 -135186881 + L2 LINE L2 3221 3313 0 952 155 0 0 chr12 8599728 8599883 -135186572 + AluSg/x SINE Alu 154 308 -2 1861 145 0 42 chr12 8599891 8599985 -135186470 + AluSx SINE Alu 1 97 -215 2396 67 0 0 chr12 8599985 8600284 -135186171 + AluY SINE Alu 1 299 -12 1861 145 0 42 chr12 8600284 8600500 -135185955 + AluSx SINE Alu 97 298 -14 522 317 123 18 chr12 8600556 8600783 -135185672 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 8601136 8601157 -135185298 + AT_rich Low_complexity Low_complexity 1 21 0 772 281 7 10 chr12 8601159 8601461 -135184994 + AluY SINE Alu 1 301 0 1085 201 0 0 chr12 8601461 8601675 -135184780 + AluSg/x SINE Alu 83 296 -14 522 317 123 18 chr12 8601731 8601958 -135184497 + MIR SINE MIR 12 262 0 1821 97 48 28 chr12 8601970 8602260 -135184195 - AluY SINE Alu -15 296 1 2217 94 0 7 chr12 8602289 8602598 -135183857 + AluSc SINE Alu 1 307 -2 2061 130 0 0 chr12 8602611 8602912 -135183543 + AluSx SINE Alu 1 301 -11 820 194 0 0 chr12 8602980 8603114 -135183341 - AluSg/x SINE Alu -23 287 154 4228 90 26 5 chr12 8603431 8603999 -135182456 - LTR19B LTR ERV1 0 580 1 2122 114 3 3 chr12 8604283 8604582 -135181873 - AluSx SINE Alu -13 299 1 358 332 20 50 chr12 8604604 8604803 -135181652 - MIR SINE MIR -46 216 24 198 143 0 0 chr12 8605491 8605526 -135180929 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 200 264 0 19 chr12 8605527 8605580 -135180875 - L2 LINE L2 0 3313 3262 2355 58 0 19 chr12 8605628 8605938 -135180517 - AluY SINE Alu -7 304 1 1969 151 12 82 chr12 8605979 8606158 -135180297 + MLT1B LTR MaLR 1 191 -199 1587 160 26 49 chr12 8606158 8606295 -135180160 + AluJo SINE Alu 12 151 -161 2298 80 7 3 chr12 8606295 8606597 -135179858 + AluSq SINE Alu 1 303 -10 1587 160 26 49 chr12 8606597 8606765 -135179690 + AluJo SINE Alu 151 310 -2 1969 151 12 82 chr12 8606765 8607001 -135179454 + MLT1B LTR MaLR 191 387 -3 2099 85 0 50 chr12 8607304 8607621 -135178834 - AluSg1 SINE Alu -8 301 1 2098 113 3 7 chr12 8607969 8608271 -135178184 + AluSq SINE Alu 1 301 -12 301 224 112 65 chr12 8608373 8608480 -135177975 + MER5B DNA MER1_type 2 113 -65 2271 198 40 28 chr12 8608583 8608644 -135177811 - MLT1D LTR MaLR -3 502 443 1222 169 177 0 chr12 8608644 8608893 -135177562 - AluSx SINE Alu -9 293 1 2271 198 40 28 chr12 8608893 8609327 -135177128 - MLT1D LTR MaLR -62 443 1 1858 150 0 0 chr12 8609332 8609618 -135176837 - AluSx SINE Alu -13 299 14 1646 178 0 7 chr12 8609954 8610252 -135176203 + AluJo SINE Alu 1 296 -16 2164 93 3 16 chr12 8611293 8611603 -135174852 - AluSq SINE Alu -7 306 1 2289 94 0 0 chr12 8611663 8611961 -135174494 - AluSx SINE Alu -14 298 1 292 165 0 0 chr12 8612079 8612130 -135174325 - AluJo SINE Alu -7 295 251 1098 171 0 5 chr12 8612132 8612319 -135174136 - AluJo SINE Alu -126 186 1 942 163 12 12 chr12 8612321 8612493 -135173962 - FAM SINE Alu -3 172 1 23 0 0 0 chr12 8612494 8612517 -135173938 + AT_rich Low_complexity Low_complexity 1 23 0 1085 180 48 89 chr12 8612522 8612641 -135173814 + L1M4 LINE L1 4683 4805 -1341 2045 119 3 0 chr12 8612641 8612944 -135173511 + AluSx SINE Alu 1 304 -8 1085 180 48 89 chr12 8612944 8613045 -135173410 + L1M4 LINE L1 4805 4889 -1257 206 32 32 0 chr12 8613045 8613076 -135173379 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1085 180 48 89 chr12 8613076 8613170 -135173285 + L1M4 LINE L1 4889 4985 -1161 1993 99 0 34 chr12 8613397 8613717 -135172738 + AluSq SINE Alu 1 310 0 209 236 36 0 chr12 8613747 8613802 -135172653 + CT-rich Low_complexity Low_complexity 2 58 0 772 209 7 7 chr12 8613824 8613972 -135172483 - AluJo SINE Alu -163 149 2 525 253 104 12 chr12 8613976 8614225 -135172230 + L1MC4 LINE L1 7768 8039 -3 1104 172 18 9 chr12 8614282 8614503 -135171952 + AluJb SINE Alu 87 309 -3 947 146 0 62 chr12 8614602 8614780 -135171675 + AluSp SINE Alu 137 303 -10 573 221 159 12 chr12 8614797 8614975 -135171480 + MIR SINE MIR 49 251 -11 2090 111 0 0 chr12 8615082 8615371 -135171084 + AluSx SINE Alu 1 289 -23 2023 121 23 3 chr12 8615548 8615854 -135170601 + AluSq SINE Alu 2 313 0 365 118 0 2 chr12 8615951 8616017 -135170438 + Alu SINE Alu 244 299 -3 3656 182 92 26 chr12 8616089 8616797 -135169658 + MER21B LTR ERV1 1 762 -101 2102 121 7 0 chr12 8616797 8617103 -135169352 + AluSq SINE Alu 1 308 -5 3656 182 92 26 chr12 8617103 8617136 -135169319 + MER21B LTR ERV1 762 791 -72 651 192 233 0 chr12 8618346 8618518 -135167937 + L1MC1 LINE L1 6110 6321 -12 192 125 0 0 chr12 8618659 8618691 -135167764 + (A)n Simple_repeat Simple_repeat 1 32 0 1426 136 14 85 chr12 8618832 8619127 -135167328 - AluJb SINE Alu -24 288 15 1954 113 0 7 chr12 8619135 8619427 -135167028 - AluSq SINE Alu -23 290 1 2375 68 0 3 chr12 8619928 8620237 -135166218 + AluY SINE Alu 1 308 -3 1221 77 6 22 chr12 8620243 8620424 -135166031 + AluSq SINE Alu 120 297 -16 648 239 176 10 chr12 8620468 8620673 -135165782 - MER8 DNA MER2_type 0 239 1 1594 44 0 10 chr12 8620710 8620914 -135165541 - AluY SINE Alu -28 283 82 924 130 7 0 chr12 8620923 8621069 -135165386 - AluJb SINE Alu -24 288 142 539 178 110 0 chr12 8622070 8622188 -135164267 + FLAM_A SINE Alu 2 132 -1 2094 84 17 3 chr12 8622196 8622493 -135163962 + AluSg SINE Alu 1 301 -9 2394 64 0 0 chr12 8622727 8623038 -135163417 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 8623192 8623221 -135163234 + (A)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr12 8623765 8623797 -135162658 + (T)n Simple_repeat Simple_repeat 1 32 0 609 118 0 64 chr12 8624459 8624569 -135161886 + FRAM SINE Alu 56 158 -18 392 217 123 9 chr12 8624586 8624692 -135161763 + MER5A DNA MER1_type 45 162 -27 188 167 0 0 chr12 8624719 8624749 -135161706 + MER5A DNA MER1_type 148 177 -12 1968 136 0 37 chr12 8624959 8625095 -135161360 + AluSx SINE Alu 1 141 -171 2111 109 0 0 chr12 8625095 8625389 -135161066 + AluY SINE Alu 1 294 -17 1968 136 0 37 chr12 8625389 8625575 -135160880 + AluSx SINE Alu 141 311 -1 337 296 58 108 chr12 8625587 8625728 -135160727 + HAL1 LINE L1 2188 2335 -172 2078 132 0 3 chr12 8625728 8626038 -135160417 + AluSq SINE Alu 1 309 -4 337 296 58 108 chr12 8626038 8626061 -135160394 + HAL1 LINE L1 2335 2358 -149 1884 133 36 7 chr12 8626061 8626363 -135160092 + AluSx SINE Alu 1 311 -1 337 296 58 108 chr12 8626363 8626437 -135160018 + HAL1 LINE L1 2358 2415 -92 1811 137 37 0 chr12 8626561 8626860 -135159595 + AluSg SINE Alu 1 310 0 1192 149 0 5 chr12 8627111 8627305 -135159150 + AluJo SINE Alu 1 193 -119 1567 90 24 0 chr12 8627312 8627524 -135158931 - AluSx SINE Alu -95 217 1 417 165 13 0 chr12 8627524 8627603 -135158852 - MER39 LTR ERV1 -45 662 583 1410 159 14 41 chr12 8627603 8627898 -135158557 + AluJo SINE Alu 1 287 -25 219 139 0 0 chr12 8627956 8627992 -135158463 + (TG)n Simple_repeat Simple_repeat 1 36 0 2446 62 3 0 chr12 8628068 8628375 -135158080 - AluSp SINE Alu -5 308 1 2306 73 3 3 chr12 8628396 8628709 -135157746 - AluSp SINE Alu 0 313 1 2174 94 3 0 chr12 8629468 8629767 -135156688 - AluSx SINE Alu -11 301 2 632 134 10 0 chr12 8629768 8629865 -135156590 + L1MC3 LINE L1 6718 6815 -970 464 125 0 0 chr12 8629877 8629941 -135156514 + AluJ/FLAM SINE Alu 3 66 -246 323 224 30 0 chr12 8629941 8630008 -135156447 - LTR9B LTR ERV1 0 644 576 1752 169 7 0 chr12 8630009 8630311 -135156144 + AluSg SINE Alu 1 304 -6 834 152 103 0 chr12 8630324 8630489 -135155966 + L1MC3 LINE L1 6887 7068 -717 885 198 0 0 chr12 8630498 8630680 -135155775 - AluJo SINE Alu -12 300 119 372 153 133 102 chr12 8630707 8630805 -135155650 + L1MC3 LINE L1 7070 7170 -615 1754 216 39 44 chr12 8630894 8631305 -135155150 + LTR2 LTR ERV1 41 449 0 2188 114 7 0 chr12 8631324 8631632 -135154823 + AluSg SINE Alu 1 310 0 1781 123 88 0 chr12 8631664 8631949 -135154506 + AluSx SINE Alu 1 310 -2 244 150 0 25 chr12 8631968 8632008 -135154447 - Alu SINE Alu -263 39 1 1849 111 13 30 chr12 8632060 8632358 -135154097 + AluSg SINE Alu 1 293 -17 37 52 0 0 chr12 8632358 8632416 -135154039 + AT_rich Low_complexity Low_complexity 1 58 0 1303 193 20 20 chr12 8632489 8632789 -135153666 + AluSp SINE Alu 1 300 -13 2137 95 20 0 chr12 8632848 8633142 -135153313 - AluSx SINE Alu -12 300 1 704 154 46 23 chr12 8633145 8633275 -135153180 - AluJo/FLAM SINE Alu -169 133 1 1881 91 0 114 chr12 8633537 8633878 -135152577 - AluSg SINE Alu -8 302 1 1565 155 25 41 chr12 8634003 8634320 -135152135 + AluJb SINE Alu 1 312 0 285 299 180 50 chr12 8634340 8634619 -135151836 - L2 LINE L2 -311 3002 2687 2025 90 16 39 chr12 8634619 8634930 -135151525 + AluSx SINE Alu 1 304 -8 258 347 0 0 chr12 8634944 8635016 -135151439 + L2 LINE L2 3242 3313 0 303 210 86 12 chr12 8635067 8635148 -135151307 + MER5A DNA MER1_type 35 121 -68 454 258 39 79 chr12 8635533 8635711 -135150744 + MIR SINE MIR 53 223 -39 420 253 0 0 chr12 8636345 8636428 -135150027 - L2 LINE L2 0 3272 3190 1588 113 36 0 chr12 8636461 8636683 -135149772 - MER30 DNA MER1_type 0 230 1 1770 165 0 13 chr12 8636725 8637041 -135149414 - AluJo SINE Alu 0 312 1 2305 88 3 0 chr12 8637247 8637553 -135148902 - AluSp SINE Alu -6 307 1 277 356 0 0 chr12 8637659 8637749 -135148706 + L2 LINE L2 3183 3272 0 675 154 14 77 chr12 8637812 8637955 -135148500 - FLAM_A SINE Alu -1 141 8 435 313 126 47 chr12 8638091 8638196 -135148259 + MIR SINE MIR 32 127 -135 2312 39 7 4 chr12 8638196 8638499 -135147956 + AluY SINE Alu 2 305 0 435 313 126 47 chr12 8638499 8638606 -135147849 + MIR SINE MIR 127 262 0 673 233 0 0 chr12 8638643 8638772 -135147683 + FLAM_A SINE Alu 3 131 -2 270 81 0 0 chr12 8638792 8638829 -135147626 + (A)n Simple_repeat Simple_repeat 1 37 0 203 294 39 78 chr12 8638885 8638964 -135147491 + MIR3 SINE MIR 8 85 -123 2142 88 3 0 chr12 8638964 8639278 -135147177 + AluSq SINE Alu 1 315 0 203 294 39 78 chr12 8639278 8639299 -135147156 + MIR3 SINE MIR 85 105 -103 2119 110 0 25 chr12 8639456 8639773 -135146682 + AluSx SINE Alu 1 309 -3 1837 116 4 0 chr12 8639850 8640108 -135146347 + AluSx SINE Alu 53 311 -1 345 307 80 22 chr12 8640119 8640256 -135146199 + MIR SINE MIR 2 146 -116 1175 108 18 0 chr12 8640257 8640423 -135146032 + L1PA12 LINE L1 5993 6161 -7 2436 44 0 16 chr12 8640423 8640738 -135145717 + AluY SINE Alu 1 310 -1 1924 136 0 13 chr12 8640749 8641057 -135145398 + AluSx SINE Alu 1 304 -8 555 273 73 14 chr12 8641121 8641341 -135145114 + L1ME LINE L1 5378 5610 -511 842 171 8 139 chr12 8641344 8641589 -135144866 + AluJo SINE Alu 2 214 -98 831 120 0 8 chr12 8641637 8641770 -135144685 + FLAM_C SINE Alu 2 133 0 2127 116 0 0 chr12 8642065 8642366 -135144089 + AluSx SINE Alu 1 301 -11 1831 120 39 3 chr12 8642584 8642701 -135143754 + AluSc SINE Alu 3 114 -195 272 27 27 0 chr12 8642701 8642738 -135143717 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1831 120 39 3 chr12 8642738 8642903 -135143552 + AluSc SINE Alu 114 295 -14 2074 107 0 0 chr12 8643433 8643737 -135142718 + AluSg SINE Alu 1 304 0 21 36 0 0 chr12 8644703 8644731 -135141724 + AT_rich Low_complexity Low_complexity 1 28 0 187 318 83 30 chr12 8646073 8646171 -135140284 + MIR SINE MIR 53 161 -101 2130 107 3 0 chr12 8646171 8646469 -135139986 + AluSq SINE Alu 1 299 -14 187 318 83 30 chr12 8646469 8646502 -135139953 + MIR SINE MIR 161 191 -71 858 140 48 131 chr12 8646678 8646777 -135139678 + MER2 DNA MER2_type 1 72 -273 2110 108 0 0 chr12 8646777 8647063 -135139392 + AluSc SINE Alu 3 288 -21 858 140 48 131 chr12 8647063 8647192 -135139263 + MER2 DNA MER2_type 72 210 -135 2274 59 3 13 chr12 8647298 8647601 -135138854 + AluY SINE Alu 1 300 -11 939 167 26 0 chr12 8647601 8647757 -135138698 + AluJb SINE Alu 137 296 -16 417 255 59 0 chr12 8647818 8647920 -135138535 - FLAM_A SINE Alu -21 112 5 1858 131 7 0 chr12 8647956 8648247 -135138208 - AluSx SINE Alu -19 293 1 1899 146 0 0 chr12 8648370 8648664 -135137791 + AluSp SINE Alu 1 294 -19 858 146 0 0 chr12 8648664 8648794 -135137661 + AluJo/FRAM SINE Alu 134 263 -49 1507 156 0 77 chr12 8648832 8649158 -135137297 + AluJo SINE Alu 12 312 0 22 70 0 0 chr12 8649183 8649226 -135137229 + AT_rich Low_complexity Low_complexity 1 43 0 2340 73 0 13 chr12 8649230 8649545 -135136910 + AluY SINE Alu 1 311 0 225 0 0 0 chr12 8649597 8649622 -135136833 + (T)n Simple_repeat Simple_repeat 1 25 0 2276 76 0 13 chr12 8649727 8650031 -135136424 + AluY SINE Alu 1 300 -11 307 300 131 38 chr12 8650055 8650345 -135136110 + L1ME LINE L1 319 635 -5435 2092 67 3 63 chr12 8650716 8651031 -135135424 + AluSc SINE Alu 1 296 -13 206 323 73 10 chr12 8651465 8651561 -135134894 - L2 LINE L2 -516 2798 2697 1798 140 4 4 chr12 8651937 8652242 -135134213 - AluSg SINE Alu 0 305 1 228 247 53 113 chr12 8652243 8652342 -135134113 - L1MC/D LINE L1 -1982 5826 5737 2113 112 10 0 chr12 8652342 8652646 -135133809 + AluSc SINE Alu 1 307 -2 228 247 53 113 chr12 8652646 8652696 -135133759 - L1MC/D LINE L1 -2071 5737 5686 193 244 186 35 chr12 8652846 8652932 -135133523 - MIR SINE MIR -111 151 53 1736 163 0 19 chr12 8652940 8653253 -135133202 - AluSx SINE Alu -5 307 1 1664 180 3 3 chr12 8653255 8653561 -135132894 - AluJb SINE Alu -6 306 1 2074 118 0 16 chr12 8653770 8654085 -135132370 - AluSg SINE Alu 0 310 1 1623 186 3 6 chr12 8654318 8654630 -135131825 - AluJo SINE Alu 0 312 2 372 220 96 0 chr12 8654803 8654909 -135131546 + L1MC4 LINE L1 6699 6795 -1166 1129 127 0 0 chr12 8654943 8655109 -135131346 + AluSq SINE Alu 130 295 -18 2106 82 4 4 chr12 8655109 8655423 -135131032 + AluSg SINE Alu 1 314 0 422 211 0 0 chr12 8655500 8655571 -135130884 + AluJ/FLAM SINE Alu 2 72 -230 1107 132 0 17 chr12 8655571 8655745 -135130710 - AluSq SINE Alu -142 171 1 1194 109 77 0 chr12 8656030 8656213 -135130242 + AluSg/x SINE Alu 103 299 -13 1997 111 11 0 chr12 8656213 8656520 -135129935 + AluSg SINE Alu 1 310 0 1256 171 0 38 chr12 8656686 8656925 -135129530 - AluJo SINE Alu -82 230 1 289 304 51 65 chr12 8657228 8657366 -135129089 + MIR SINE MIR 5 140 -122 1574 174 0 15 chr12 8657377 8657647 -135128808 + AluJo SINE Alu 1 266 -46 220 84 189 32 chr12 8657651 8657746 -135128709 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 1849 140 0 10 chr12 8657757 8658057 -135128398 + AluSq SINE Alu 1 297 -16 700 88 10 0 chr12 8658065 8658167 -135128288 + HY1 scRNA scRNA 3 105 -7 2037 117 10 0 chr12 8658291 8658581 -135127874 - AluSg SINE Alu -17 293 1 1870 133 30 0 chr12 8658649 8658951 -135127504 - AluSx SINE Alu -1 311 1 1683 152 28 0 chr12 8660147 8660436 -135126019 - AluSx SINE Alu -15 297 1 1418 217 14 0 chr12 8660579 8660874 -135125581 + AluJb SINE Alu 1 299 -13 1909 151 7 3 chr12 8660874 8661173 -135125282 + AluSq SINE Alu 1 300 -13 2000 111 7 3 chr12 8661177 8661466 -135124989 + AluSx SINE Alu 3 292 -20 2230 94 10 3 chr12 8661471 8661779 -135124676 + AluSg SINE Alu 1 310 0 1011 149 0 12 chr12 8662198 8662410 -135124045 - AluSq SINE Alu 0 329 120 2384 50 0 3 chr12 8662909 8663210 -135123245 + AluY SINE Alu 1 300 -11 1440 181 17 13 chr12 8664158 8664456 -135121999 + AluJb SINE Alu 1 299 -13 1560 110 0 13 chr12 8664486 8664713 -135121742 + AluSq SINE Alu 1 224 -89 445 114 0 0 chr12 8664768 8664838 -135121617 + Alu SINE Alu 239 308 -3 1989 109 10 14 chr12 8665852 8666146 -135120309 - AluSp SINE Alu -20 293 1 1976 111 17 3 chr12 8666336 8666633 -135119822 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr12 8666742 8666769 -135119686 + AT_rich Low_complexity Low_complexity 1 27 0 1612 153 0 8 chr12 8667165 8667433 -135119022 + AluSx SINE Alu 46 311 -1 1428 216 10 10 chr12 8667486 8667782 -135118673 + AluJb SINE Alu 2 297 -5 21 0 0 0 chr12 8669396 8669417 -135117038 + AT_rich Low_complexity Low_complexity 1 21 0 2036 113 0 0 chr12 8669423 8669715 -135116740 + AluSx SINE Alu 1 292 -20 2036 115 0 16 chr12 8670989 8671293 -135115162 + AluSx SINE Alu 1 299 -13 1622 90 0 0 chr12 8671640 8671852 -135114603 + MER41A LTR ERV1 1 212 -342 257 138 0 17 chr12 8671997 8672055 -135114400 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 244 241 12 72 chr12 8672064 8672093 -135114362 + L2 LINE L2 3188 3217 -96 2222 84 3 7 chr12 8672093 8672391 -135114064 - AluSq SINE Alu -11 302 6 244 241 12 72 chr12 8672391 8672444 -135114011 + L2 LINE L2 3217 3265 -48 553 218 81 0 chr12 8672459 8672583 -135113872 + MER5A DNA MER1_type 28 161 -28 2196 95 7 10 chr12 8673053 8673359 -135113096 + AluSp SINE Alu 1 305 -8 593 152 10 0 chr12 8674027 8674126 -135112329 + HY1 scRNA scRNA 12 111 -1 1652 93 0 40 chr12 8674274 8674521 -135111934 + AluSg SINE Alu 1 237 -73 1830 117 18 0 chr12 8674554 8674827 -135111628 + AluSg SINE Alu 1 278 -32 868 100 6 25 chr12 8674827 8674987 -135111468 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 440 225 50 100 chr12 8674991 8675052 -135111403 + MER58 DNA MER1_type 19 82 -2338 2341 75 7 0 chr12 8675052 8675359 -135111096 - AluSx SINE Alu -3 309 1 440 225 50 100 chr12 8675359 8675457 -135110998 + MER58 DNA MER1_type 81 170 -2250 2045 123 3 0 chr12 8675505 8675814 -135110641 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 8675934 8675956 -135110499 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr12 8676407 8676442 -135110013 + AT_rich Low_complexity Low_complexity 1 35 0 487 165 0 44 chr12 8676831 8676922 -135109533 - AluS SINE Alu -225 88 2 2149 101 0 3 chr12 8676951 8677247 -135109208 + AluSg SINE Alu 1 295 -15 271 143 0 0 chr12 8677248 8677290 -135109165 + Charlie5 DNA MER1_type 2544 2585 -27 180 0 0 0 chr12 8678069 8678089 -135108366 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1318 112 11 0 chr12 8678093 8678281 -135108174 - AluSg/x SINE Alu -37 273 84 1337 127 53 133 chr12 8678740 8679062 -135107393 - AluJo SINE Alu -14 298 3 604 179 17 8 chr12 8679121 8679238 -135107217 + FLAM_C SINE Alu 26 143 0 2122 77 0 48 chr12 8679674 8679986 -135106469 - AluSx SINE Alu -15 297 1 574 188 0 0 chr12 8680831 8680932 -135105523 + FLAM_A SINE Alu 1 101 -41 2168 102 3 0 chr12 8681338 8681643 -135104812 - AluSx SINE Alu -5 307 2 2194 111 0 0 chr12 8682331 8682629 -135103826 - AluSq SINE Alu -15 298 1 861 184 0 0 chr12 8682835 8682982 -135103473 - AluJb SINE Alu -30 282 136 2167 107 0 3 chr12 8683020 8683330 -135103125 + AluSg1 SINE Alu 1 309 0 208 213 43 0 chr12 8683751 8683798 -135102657 + MIR SINE MIR 183 231 -31 2109 106 20 0 chr12 8683890 8684191 -135102264 - AluSx SINE Alu -4 308 2 2067 100 28 0 chr12 8684239 8684530 -135101925 - AluSg1 SINE Alu -10 299 1 1044 120 0 6 chr12 8684904 8685062 -135101393 - AluSx SINE Alu -12 300 144 2147 91 3 13 chr12 8685091 8685389 -135101066 - AluSg SINE Alu -15 295 1 496 31 0 0 chr12 8685412 8685477 -135100978 - MER41B LTR ERV1 -88 547 483 872 111 37 0 chr12 8685477 8685612 -135100843 - AluSx SINE Alu -173 140 1 1197 97 11 27 chr12 8686023 8686208 -135100247 + AluSg/x SINE Alu 128 309 -1 523 263 99 7 chr12 8686211 8686363 -135100092 + AluJo/FRAM SINE Alu 137 302 0 957 102 0 38 chr12 8686364 8686467 -135099988 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 957 102 0 38 chr12 8686467 8686653 -135099802 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 623 133 62 47 chr12 8687117 8687245 -135099210 + FLAM_A SINE Alu 1 130 -3 2082 118 3 10 chr12 8687676 8687989 -135098466 - AluY SINE Alu 0 311 1 2061 121 3 0 chr12 8687994 8688292 -135098163 - AluSx SINE Alu -13 299 1 1082 107 0 0 chr12 8688476 8688626 -135097829 + AluSq/x SINE Alu 1 150 -162 195 42 0 0 chr12 8688640 8688664 -135097791 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2039 114 17 0 chr12 8688721 8689019 -135097436 - AluSx SINE Alu -9 303 1 1974 121 0 0 chr12 8689195 8689497 -135096958 - AluSx SINE Alu 0 302 1 2126 91 10 0 chr12 8689732 8690030 -135096425 - AluSp SINE Alu -12 301 1 2083 128 0 0 chr12 8690066 8690370 -135096085 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 8690416 8690441 -135096014 + AT_rich Low_complexity Low_complexity 1 25 0 650 185 0 52 chr12 8690627 8690762 -135095693 + FLAM_A SINE Alu 1 128 -5 2306 60 7 13 chr12 8690782 8691083 -135095372 - AluY SINE Alu -10 301 3 776 180 60 80 chr12 8691229 8691429 -135095026 - MER21A LTR ERV1 0 931 736 1172 142 31 62 chr12 8691592 8691754 -135094701 + Tigger5 DNA MER2_type 2072 2225 -98 2327 86 3 0 chr12 8691754 8692057 -135094398 - AluSp SINE Alu -9 304 1 1172 142 31 62 chr12 8692057 8692154 -135094301 + Tigger5 DNA MER2_type 2225 2323 0 970 183 83 121 chr12 8692154 8692245 -135094210 + L1ME2 LINE L1 5236 5329 -833 1959 127 0 3 chr12 8692245 8692529 -135093926 + AluSq SINE Alu 1 283 -30 970 183 83 121 chr12 8692529 8692820 -135093635 + L1ME2 LINE L1 5329 5603 -559 831 168 0 8 chr12 8692823 8692954 -135093501 + FLAM_C SINE Alu 1 130 -13 1112 211 21 28 chr12 8692955 8693238 -135093217 + L1ME2 LINE L1 5581 5864 -298 431 19 0 0 chr12 8693246 8693298 -135093157 + AluSq/x SINE Alu 82 133 -179 753 198 46 72 chr12 8693340 8693498 -135092957 + L1ME2 LINE L1 5871 6023 -141 1997 139 0 10 chr12 8693498 8693808 -135092647 + AluSx SINE Alu 1 307 -5 753 198 46 72 chr12 8693808 8693886 -135092569 + L1ME2 LINE L1 6023 6101 -63 2201 196 70 15 chr12 8694124 8694594 -135091861 - MLT1D LTR MaLR -2 503 8 1880 135 10 0 chr12 8694594 8694897 -135091558 - AluSx SINE Alu -6 306 1 2304 87 0 0 chr12 8695318 8695616 -135090839 + AluSq SINE Alu 1 298 -15 2330 80 0 3 chr12 8695935 8696237 -135090218 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr12 8696280 8696303 -135090152 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 486 0 0 0 chr12 8696723 8696777 -135089678 + (TG)n Simple_repeat Simple_repeat 2 55 0 2134 110 0 0 chr12 8696932 8697231 -135089224 + AluSx SINE Alu 1 299 -13 687 188 0 43 chr12 8697469 8697607 -135088848 - FLAM_C SINE Alu -1 132 1 1697 143 49 0 chr12 8697610 8697897 -135088558 - AluJo SINE Alu -11 301 1 273 325 121 24 chr12 8698080 8698286 -135088169 - L2 LINE L2 -496 2818 2593 2110 108 7 0 chr12 8698375 8698672 -135087783 + AluSp SINE Alu 1 299 -14 780 273 47 17 chr12 8699571 8699879 -135086576 + L2 LINE L2 2739 3070 -243 2161 107 0 16 chr12 8699922 8700230 -135086225 - AluSx SINE Alu -9 303 1 1589 168 23 23 chr12 8700233 8700424 -135086031 - AluJo SINE Alu -2 310 117 192 40 0 0 chr12 8700424 8700449 -135086006 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 168 23 23 chr12 8700449 8700567 -135085888 - AluJo SINE Alu -194 118 1 362 21 21 0 chr12 8701002 8701049 -135085406 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2108 125 8 64 chr12 8701097 8701304 -135085151 - L1PA16 LINE L1 -3 6163 5987 2215 80 0 41 chr12 8701304 8701618 -135084837 - AluY SINE Alu -10 301 1 2108 125 8 64 chr12 8701618 8701802 -135084653 - L1PA16 LINE L1 -179 5987 5794 1932 109 20 7 chr12 8701811 8702105 -135084350 - AluSx SINE Alu -14 298 1 662 90 0 10 chr12 8702116 8702216 -135084239 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 2087 107 3 0 chr12 8702216 8702506 -135083949 - AluSg SINE Alu -19 291 1 2347 77 0 0 chr12 8702532 8702842 -135083613 - AluY SINE Alu -1 310 1 996 113 0 134 chr12 8702843 8703081 -135083374 - L1MC/D LINE L1 -628 5614 5409 198 0 0 0 chr12 8703134 8703156 -135083299 + (TG)n Simple_repeat Simple_repeat 1 22 0 270 56 0 0 chr12 8703171 8703207 -135083248 + (TA)n Simple_repeat Simple_repeat 2 37 0 2502 65 3 0 chr12 8703207 8703517 -135082938 - AluSp SINE Alu -2 311 1 23 33 0 0 chr12 8703517 8703547 -135082908 + AT_rich Low_complexity Low_complexity 1 30 0 1937 109 60 0 chr12 8703558 8703842 -135082613 - AluSp SINE Alu -12 301 1 1900 135 0 0 chr12 8704166 8704495 -135081960 + AluSx SINE Alu 1 329 0 32 43 0 0 chr12 8704600 8704646 -135081809 + AT_rich Low_complexity Low_complexity 1 46 0 1522 180 0 11 chr12 8704647 8704931 -135081524 - AluJb SINE Alu -23 289 9 353 75 19 0 chr12 8705448 8705501 -135080954 + (CA)n Simple_repeat Simple_repeat 2 55 0 710 335 11 27 chr12 8705714 8705977 -135080478 - MIR SINE MIR -2 260 2 788 164 0 8 chr12 8706392 8706526 -135079929 + FLAM_C SINE Alu 1 133 0 1306 214 36 0 chr12 8706543 8706819 -135079636 - AluJo SINE Alu -22 290 5 2180 97 10 13 chr12 8706993 8707301 -135079154 - AluSx SINE Alu -5 307 1 2201 100 3 0 chr12 8707303 8707603 -135078852 - AluSq SINE Alu -12 301 1 1084 99 0 47 chr12 8707985 8708157 -135078298 + FRAM SINE Alu 1 163 -13 203 306 0 0 chr12 8708173 8708235 -135078220 + CT-rich Low_complexity Low_complexity 4 65 0 663 204 8 0 chr12 8708904 8709036 -135077419 + FLAM_A SINE Alu 1 133 0 2093 110 0 7 chr12 8709300 8709620 -135076835 + AluSg SINE Alu 1 310 0 21 0 0 0 chr12 8709840 8709861 -135076594 + AT_rich Low_complexity Low_complexity 1 21 0 1478 172 50 27 chr12 8710278 8710408 -135076047 + AluJo SINE Alu 7 132 -180 2374 25 0 7 chr12 8710408 8710732 -135075723 + AluY SINE Alu 1 322 0 1478 172 50 27 chr12 8710732 8710897 -135075558 + AluJo SINE Alu 132 310 -2 2363 51 10 0 chr12 8710900 8711196 -135075259 - AluY SINE Alu -12 299 1 645 215 126 0 chr12 8711658 8711793 -135074662 + FRAM SINE Alu 1 151 -25 822 154 0 0 chr12 8711796 8711926 -135074529 + FLAM_C SINE Alu 1 130 -13 197 62 0 31 chr12 8711934 8711966 -135074489 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 211 148 16 33 chr12 8712069 8712101 -135074354 + (TTA)n Simple_repeat Simple_repeat 1 33 -27 843 215 0 41 chr12 8712101 8712273 -135074182 - FAM SINE Alu -10 165 1 211 148 16 33 chr12 8712273 8712301 -135074154 + (TTA)n Simple_repeat Simple_repeat 33 60 0 1796 142 0 41 chr12 8712413 8712729 -135073726 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 8712773 8712796 -135073659 + AT_rich Low_complexity Low_complexity 1 23 0 1767 198 3 15 chr12 8713071 8713395 -135073060 - MLT1F LTR MaLR -25 517 198 822 160 0 0 chr12 8713414 8713539 -135072916 - FLAM_C SINE Alu -17 126 2 734 266 5 26 chr12 8713539 8713731 -135072724 - MLT1F LTR MaLR -340 202 15 475 74 12 86 chr12 8713893 8713974 -135072481 + MER52C LTR ERV1 952 1026 -252 * 808 155 115 104 chr12 8713973 8714165 -135072290 - LTR56 LTR ERV1 -164 281 84 2431 58 0 3 chr12 8714165 8714474 -135071981 - AluY SINE Alu -3 308 1 808 155 115 104 chr12 8714474 8714559 -135071896 - LTR56 LTR ERV1 -361 84 1 2218 89 0 0 chr12 8714735 8715026 -135071429 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 8715030 8715055 -135071400 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 346 214 0 125 chr12 8715063 8715175 -135071280 + MER61E LTR ERV1 4 101 -468 535 141 0 0 chr12 8715888 8715966 -135070489 + MSTB LTR MaLR 1 78 -348 3020 179 60 24 chr12 8715967 8716582 -135069873 - LTR9B LTR ERV1 -1 643 7 1292 213 2 11 chr12 8716582 8716855 -135069600 - HUERS-P3 LTR ERV1 0 8919 7158 772 178 26 36 chr12 8717159 8717368 -135069087 - HUERS-P3b LTR ERV1 -551 4329 1860 280 170 7 185 chr12 8717340 8717424 -135069031 - HUERS-P3b LTR ERV1 -462 6956 6903 * 2271 81 3 3 chr12 8717424 8717722 -135068733 - AluSp SINE Alu -15 298 1 280 170 7 185 chr12 8717722 8717772 -135068683 - HUERS-P3b LTR ERV1 -515 6903 6846 * 4171 190 37 5 chr12 8717762 8718510 -135067945 - HUERS-P3b LTR ERV1 -1986 6933 6162 * 4485 108 39 20 chr12 8718495 8718948 -135067507 - HUERS-P3b LTR ERV1 -3342 5577 5105 2238 77 10 0 chr12 8718948 8719248 -135067207 - AluY SINE Alu -8 303 1 4485 108 39 20 chr12 8719248 8719458 -135066997 - HUERS-P3b LTR ERV1 -3814 5105 4901 828 217 7 0 chr12 8719459 8719602 -135066853 - HUERS-P3b LTR ERV1 -4237 4682 4539 7695 150 33 14 chr12 8719605 8720675 -135065780 - HUERS-P3b LTR ERV1 -5314 2104 1834 2197 97 0 0 chr12 8720675 8720963 -135065492 - AluSc SINE Alu -21 288 1 7695 150 33 14 chr12 8720963 8721506 -135064949 - HUERS-P3b LTR ERV1 -5584 1834 1303 4490 146 155 27 chr12 8721514 8722874 -135063581 - pTR5 LTR ERV1 0 2438 741 2729 158 87 31 chr12 8722873 8723240 -135063215 - HUERS-P3b LTR ERV1 -7597 1322 912 * 2058 129 7 0 chr12 8723240 8723526 -135062929 - AluSg SINE Alu -22 288 1 2729 158 87 31 chr12 8723526 8723707 -135062748 - HUERS-P3b LTR ERV1 -8007 912 743 677 168 85 16 chr12 8723730 8723887 -135062568 - HUERS-P3b LTR ERV1 -6859 559 412 285 157 14 86 chr12 8723871 8723941 -135062514 - HUERS-P3b LTR ERV1 -8821 98 34 * 3010 168 76 25 chr12 8723965 8724572 -135061883 - LTR9B LTR ERV1 0 644 7 1570 159 159 3 chr12 8724581 8724883 -135061572 + MSTB LTR MaLR 78 426 0 271 62 0 42 chr12 8725140 8725188 -135061267 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 2121 130 0 0 chr12 8725251 8725544 -135060911 - AluSg SINE Alu -15 295 3 1751 327 74 26 chr12 8725544 8725939 -135060516 - L2 LINE L2 -293 3020 2645 6008 63 20 14 chr12 8725939 8726381 -135060074 + MER4E LTR ERV1 1 450 -316 2306 105 0 0 chr12 8726381 8726675 -135059780 - AluSx SINE Alu -18 294 1 6008 63 20 14 chr12 8726675 8726990 -135059465 + MER4E LTR ERV1 450 762 -4 1751 327 74 26 chr12 8726990 8727583 -135058872 - L2 LINE L2 -668 2645 1988 2373 76 0 28 chr12 8727877 8728194 -135058261 - AluY SINE Alu -2 309 2 2555 77 21 0 chr12 8728197 8728523 -135057932 - L1PA13 LINE L1 -4 6159 5827 631 211 0 8 chr12 8728523 8728644 -135057811 + L1MA4 LINE L1 6169 6300 0 265 359 98 38 chr12 8728898 8729185 -135057270 - L2 LINE L2 -4 3268 2965 7805 171 37 9 chr12 8729187 8731251 -135055204 + L1PB4 LINE L1 3710 5842 -314 2405 88 16 0 chr12 8731251 8731556 -135054899 + AluSx SINE Alu 1 310 -2 7805 171 37 9 chr12 8731556 8731772 -135054683 + L1PB4 LINE L1 5842 6051 -105 271 125 21 0 chr12 8731788 8731836 -135054619 + L1PA16 LINE L1 6101 6149 -17 250 352 117 20 chr12 8731836 8732032 -135054423 - L2 LINE L2 -186 3086 2872 1204 251 78 6 chr12 8732135 8732494 -135053961 + L1MC4a LINE L1 5538 5922 -1886 2456 81 3 0 chr12 8732991 8733298 -135053157 - AluSc SINE Alu -1 308 1 632 153 178 31 chr12 8733471 8733634 -135052821 + MER53 DNA DNA 1 187 -2 618 95 0 0 chr12 8733740 8733835 -135052620 + (CGG)n Simple_repeat Simple_repeat 3 97 0 391 289 0 0 chr12 8734128 8734218 -135052237 - MIR SINE MIR -126 136 47 1155 108 0 0 chr12 8734219 8734385 -135052070 + AluSg/x SINE Alu 137 302 -10 294 120 100 0 chr12 8734385 8734435 -135052020 + Alu SINE Alu 236 290 -12 321 304 104 52 chr12 8735062 8735312 -135051143 + L1MEd LINE L1 961 1223 -4896 1155 218 97 7 chr12 8735397 8735877 -135050578 + L1ME LINE L1 5040 5557 -609 2168 97 3 17 chr12 8736689 8736987 -135049468 + AluSx SINE Alu 13 306 -6 3107 90 42 2 chr12 8737041 8737589 -135048866 + PABL_A LTR ERV1 1 655 -5 1144 283 70 15 chr12 8738161 8738631 -135047824 - L1ME3A LINE L1 -1 6169 5674 700 140 0 0 chr12 8738634 8738734 -135047721 - LTR12 LTR ERV1 0 714 615 312 253 10 10 chr12 8738737 8738836 -135047619 - LTR30 LTR ERV1 -80 642 544 1238 109 153 52 chr12 8738841 8739089 -135047366 - LTR12 LTR ERV1 -441 273 1 933 239 60 28 chr12 8739096 8739475 -135046980 - L1ME3A LINE L1 -612 5552 5156 2026 126 49 0 chr12 8739475 8739760 -135046695 + AluSq SINE Alu 1 299 -14 933 239 60 28 chr12 8739760 8739906 -135046549 - L1ME3A LINE L1 -1008 5156 5016 3423 208 80 6 chr12 8739913 8740819 -135045636 - L1ME1 LINE L1 -3 6163 5195 249 159 0 0 chr12 8741803 8741847 -135044608 + L1PA10 LINE L1 6121 6164 -4 39 22 0 0 chr12 8742226 8742272 -135044183 + AT_rich Low_complexity Low_complexity 1 46 0 2363 95 0 3 chr12 8743680 8743985 -135042470 - AluSg SINE Alu -6 304 1 270 295 91 39 chr12 8744071 8744299 -135042156 - L1ME LINE L1 -403 5759 5519 324 228 38 156 chr12 8744512 8744801 -135041654 + MER112 DNA MER1_type 1 255 -5 38 61 0 0 chr12 8744822 8744888 -135041567 + AT_rich Low_complexity Low_complexity 1 66 0 1535 128 173 0 chr12 8745843 8746092 -135040363 + AluSg SINE Alu 3 294 -16 802 256 106 8 chr12 8746148 8746393 -135040062 - MER82 DNA MER2_type 0 653 385 453 58 4 29 chr12 8746393 8746476 -135039979 - MLT2A1 LTR ERVL 0 453 368 1271 92 52 0 chr12 8746592 8746766 -135039689 - MLT2A1 LTR ERVL -40 404 222 1130 201 14 5 chr12 8746767 8746976 -135039479 - MER82 DNA MER2_type -264 389 179 1658 185 71 3 chr12 8746996 8747348 -135039107 - L1MA9 LINE L1 -1 6311 5936 893 110 43 0 chr12 8747352 8747516 -135038939 + CT-rich Low_complexity Low_complexity 1 171 0 746 134 8 0 chr12 8747516 8747643 -135038812 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1394 109 0 5 chr12 8747645 8747837 -135038618 - AluSg/x SINE Alu -40 272 82 17628 214 26 17 chr12 8747905 8748893 -135037562 - L1P4 LINE L1 -466 6350 5373 186 71 0 0 chr12 8748893 8748921 -135037534 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 17628 214 26 17 chr12 8748921 8749884 -135036571 - L1P4 LINE L1 -1443 5373 4420 546 70 0 93 chr12 8749884 8749917 -135036538 + MADE1 DNA Mariner 1 35 -45 1954 149 14 0 chr12 8749917 8749930 -135036525 - AluSx SINE Alu -13 299 288 708 64 0 0 chr12 8749930 8750024 -135036431 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1954 149 14 0 chr12 8750024 8750305 -135036150 - AluSx SINE Alu -24 288 1 546 70 0 93 chr12 8750305 8750357 -135036098 + MADE1 DNA Mariner 35 78 -2 17628 214 26 17 chr12 8750357 8751136 -135035319 - L1P4 LINE L1 -2396 4420 3650 2378 93 0 10 chr12 8751136 8751437 -135035018 - AluSc SINE Alu -11 298 1 17628 214 26 17 chr12 8751437 8754224 -135032231 - L1P4 LINE L1 -3166 3650 775 2384 158 80 22 chr12 8754220 8754358 -135032097 - L1P4 LINE L1 -380 5786 5658 * 1762 85 0 5 chr12 8754358 8754582 -135031873 - AluY SINE Alu -9 302 80 2384 158 80 22 chr12 8754582 8754905 -135031550 - L1P4 LINE L1 -508 5658 5298 835 138 0 0 chr12 8755691 8755814 -135030641 - AluSp/q SINE Alu -12 301 179 1530 132 0 9 chr12 8755814 8756033 -135030422 - AluSx SINE Alu -93 219 3 398 130 0 26 chr12 8756438 8756515 -135029940 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1377 331 8 15 chr12 8756657 8757249 -135029206 - MER21A-int LTR ERV1 -128 6521 5934 711 291 49 61 chr12 8758257 8758877 -135027578 - MER21A-int LTR ERV1 -729 7056 3365 349 314 8 8 chr12 8759280 8759404 -135027051 - MER21A-int LTR ERV1 -3744 3152 3029 2086 153 0 0 chr12 8759583 8759884 -135026571 - AluSx SINE Alu -11 301 1 206 265 0 0 chr12 8759888 8759937 -135026518 + T-rich Low_complexity Low_complexity 1 49 0 2396 342 29 31 chr12 8759946 8762014 -135024441 - MER21A-int LTR ERV1 -2029 5756 2864 362 341 0 0 chr12 8762027 8762162 -135024293 - MER21A-int LTR ERV1 -4160 3625 3491 32178 113 12 53 chr12 8762186 8768596 -135017859 - L1PA7 LINE L1 0 6154 12 1715 323 41 36 chr12 8768917 8770922 -135015533 - MER21A-int LTR ERV1 -4395 3390 954 207 0 0 0 chr12 8771292 8771315 -135015140 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8285 20 1 320 chr12 8771320 8773351 -135013104 + SVA Other Other 2 1383 -3 280 310 82 6 chr12 8773648 8773819 -135012636 - MER21A-int LTR ERV1 -6279 370 187 12026 247 21 21 chr12 8774435 8777944 -135008511 - L1P LINE L1 -950 5196 1686 2224 122 10 124 chr12 8777957 8778464 -135007991 - LTR10A LTR ERV1 -160 449 1 359 299 0 0 chr12 8778646 8778743 -135007712 - L1PA12 LINE L1 -5399 1446 1350 550 354 23 34 chr12 8778991 8779476 -135006979 - L1M2 LINE L1 -6317 521 3 2798 199 41 26 chr12 8779478 8780551 -135005904 - MER21A-int LTR ERV1 -2565 4193 163 280 167 42 0 chr12 8780571 8780619 -135005836 - MER21A-int LTR ERV1 -4141 50 1 2225 198 22 86 chr12 8780653 8781534 -135004921 - MER21A LTR ERV1 -17 914 1 349 323 19 19 chr12 8781538 8781720 -135004735 - L1M3de LINE L1 -5038 1615 1434 2452 78 0 0 chr12 8781871 8782167 -135004288 - AluY SINE Alu -14 297 2 3543 84 63 6 chr12 8782196 8782686 -135003769 - MER11A LTR ERVK -748 518 1 2105 215 0 35 chr12 8782687 8783176 -135003279 + L1 LINE L1 2398 2869 -3277 2335 114 47 33 chr12 8783199 8783558 -135002897 + THE1B LTR MaLR 1 364 0 2286 152 3 8 chr12 8783558 8783921 -135002534 + L1PB3 LINE L1 5794 6154 0 418 276 10 0 chr12 8783971 8784069 -135002386 + ERVL LTR ERVL 2186 2284 -3480 298 161 0 0 chr12 8784216 8784272 -135002183 - L1MB8 LINE L1 0 6178 6123 * 850 177 25 0 chr12 8784271 8784429 -135002026 + L1 LINE L1 3652 3813 -2333 720 215 71 11 chr12 8784763 8785139 -135001316 - L1MB8 LINE L1 -42 6136 5677 * 1320 291 63 30 chr12 8785138 8786009 -135000446 - L1M4c LINE L1 -3451 2931 2021 880 224 14 14 chr12 8786022 8786236 -135000219 - L1MB8 LINE L1 -1366 4780 4567 * 2236 203 35 18 chr12 8786234 8786960 -134999495 - L1MCb LINE L1 -4851 1194 600 1416 239 82 72 chr12 8786947 8787541 -134998914 - L1MCb LINE L1 -5821 743 144 * 2146 113 0 26 chr12 8787766 8788077 -134998378 - AluSc SINE Alu -6 303 1 561 272 75 8 chr12 8788306 8788545 -134997910 - Tigger8 DNA MER2_type -200 466 212 369 0 0 0 chr12 8789763 8789804 -134996651 + (CA)n Simple_repeat Simple_repeat 2 42 0 3611 113 19 2 chr12 8789989 8790510 -134995945 - L1MA1 LINE L1 0 6302 5773 408 293 108 81 chr12 8791096 8791847 -134994608 - HAL1 LINE L1 -681 1826 1056 4754 196 33 37 chr12 8792955 8794442 -134992013 - L1MA9 LINE L1 -36 6276 4793 2293 98 3 13 chr12 8794442 8794757 -134991698 - AluSx SINE Alu 0 312 1 4754 196 33 37 chr12 8794757 8794952 -134991503 - L1MA9 LINE L1 -1519 4793 4599 2767 114 5 18 chr12 8796637 8797030 -134989425 - L1PA8A LINE L1 -13 6118 5731 11471 41 6 0 chr12 8797117 8799202 -134987253 - L1PA5 LINE L1 0 6154 4064 434 167 0 0 chr12 8799321 8799393 -134987062 + Alu SINE Alu 239 310 -2 23 54 0 0 chr12 8799436 8799473 -134986982 + AT_rich Low_complexity Low_complexity 1 37 0 2060 120 13 25 chr12 8799489 8799805 -134986650 - AluSp SINE Alu -1 312 1 1680 117 0 21 chr12 8799842 8799981 -134986474 - AluSq SINE Alu -41 272 139 2145 128 0 3 chr12 8799981 8800287 -134986168 - AluSx SINE Alu -7 305 1 1680 117 0 21 chr12 8800287 8800386 -134986069 - AluSq SINE Alu -174 139 39 1157 162 16 0 chr12 8800401 8800592 -134985863 - L1M2 LINE L1 -623 5689 5496 956 210 122 5 chr12 8800594 8800808 -134985647 - MLT1A1 LTR MaLR -79 286 48 1992 115 7 0 chr12 8800811 8801099 -134985356 - AluSx SINE Alu -22 290 1 620 129 95 17 chr12 8801101 8801217 -134985238 + L1MC2 LINE L1 5703 5827 -517 2253 104 0 0 chr12 8801218 8801516 -134984939 + AluSp SINE Alu 1 298 -15 1055 92 0 0 chr12 8802093 8802223 -134984232 + AluSq/x SINE Alu 1 130 -183 1739 124 4 4 chr12 8802230 8802480 -134983975 + AluSp SINE Alu 49 298 -15 21 0 0 0 chr12 8802529 8802550 -134983905 + AT_rich Low_complexity Low_complexity 1 21 0 2130 125 0 7 chr12 8802552 8802856 -134983599 - AluSx SINE Alu -10 302 1 1101 333 42 15 chr12 8802874 8803432 -134983023 - L2 LINE L2 -4 3309 2739 1040 168 11 173 chr12 8803499 8803637 -134982818 + AluSc SINE Alu 1 47 -262 2410 75 3 0 chr12 8803637 8803931 -134982524 + AluSp SINE Alu 3 297 -16 1040 168 11 173 chr12 8803931 8804150 -134982305 + AluSc SINE Alu 47 300 -9 2229 131 0 0 chr12 8804319 8804632 -134981823 - AluSq SINE Alu 0 313 1 757 167 15 23 chr12 8804846 8804978 -134981477 + FLAM_C SINE Alu 7 137 -6 2035 100 6 85 chr12 8805002 8805332 -134981123 - AluSq SINE Alu -9 304 1 829 187 0 8 chr12 8805496 8805630 -134980825 + FLAM_A SINE Alu 1 133 0 2005 138 20 7 chr12 8805878 8806175 -134980280 + AluSx SINE Alu 5 305 -7 2258 80 10 3 chr12 8806175 8806464 -134979991 + AluY SINE Alu 1 291 -20 447 252 9 9 chr12 8806655 8806766 -134979689 + MER70B LTR ERVL 457 567 -11 2248 111 0 0 chr12 8806833 8807130 -134979325 + AluSx SINE Alu 3 299 -13 23 78 0 0 chr12 8807145 8807196 -134979259 + AT_rich Low_complexity Low_complexity 1 51 0 2426 43 3 0 chr12 8807233 8807538 -134978917 + AluY SINE Alu 1 306 0 2408 68 3 0 chr12 8807842 8808134 -134978321 + AluSp SINE Alu 3 295 -18 328 294 14 28 chr12 8808569 8808712 -134977743 + CT-rich Low_complexity Low_complexity 4 144 0 1552 98 0 5 chr12 8808926 8809130 -134977325 + AluSc SINE Alu 1 203 -106 2241 102 3 3 chr12 8809130 8809425 -134977030 + AluSx SINE Alu 3 297 -15 1163 148 0 0 chr12 8809428 8809604 -134976851 + AluSg/x SINE Alu 135 310 0 388 211 138 0 chr12 8809710 8809819 -134976636 - MLT2C1 LTR ERVL -200 197 74 * 448 106 18 41 chr12 8809801 8809914 -134976541 + AluSp SINE Alu 119 293 -17 2267 80 0 46 chr12 8809920 8810245 -134976210 + AluY SINE Alu 1 310 -1 391 125 31 0 chr12 8810260 8810324 -134976131 - MLT2C1 LTR ERVL -331 66 1 1013 222 36 14 chr12 8810325 8810600 -134975855 + L1M4 LINE L1 3656 3936 -2210 245 114 136 0 chr12 8810579 8810623 -134975832 + L1MB7 LINE L1 5582 5631 -553 * 556 159 37 0 chr12 8810630 8810737 -134975718 + L1MB7 LINE L1 5768 5878 -306 737 146 0 17 chr12 8810739 8811003 -134975452 + AluJ SINE Alu 1 309 -3 815 212 18 0 chr12 8811012 8811177 -134975278 + L1MB7 LINE L1 5871 6038 -146 556 159 11 11 chr12 8811246 8811334 -134975121 - AluS SINE Alu -224 89 2 383 254 42 117 chr12 8811358 8811598 -134974857 + L2 LINE L2 1698 1919 -1395 2222 127 0 0 chr12 8811612 8811920 -134974535 + AluSx SINE Alu 2 309 -3 542 147 20 10 chr12 8811924 8812180 -134974275 + AluSx SINE Alu 1 305 -4 1734 158 0 7 chr12 8812242 8812563 -134973892 - AluSx SINE Alu 0 319 1 986 262 99 66 chr12 8812564 8813159 -134973296 + L2 LINE L2 1938 2555 -759 2592 62 0 0 chr12 8813159 8813463 -134972992 - AluY SINE Alu -7 304 1 986 262 99 66 chr12 8813463 8813485 -134972970 + L2 LINE L2 2555 2575 -739 511 124 0 56 chr12 8813661 8813750 -134972705 - AluS SINE Alu -4 305 222 491 185 25 25 chr12 8914318 8914437 -134872018 + FLAM_C SINE Alu 1 119 -14 576 284 147 10 chr12 8915421 8915618 -134870837 + MIR SINE MIR 34 257 -5 315 318 126 33 chr12 8915676 8915832 -134870623 - MIR3 SINE MIR -11 197 25 2438 70 6 21 chr12 8916394 8916722 -134869733 + L1PA7 LINE L1 5831 6153 -1 33 0 0 0 chr12 8916725 8916758 -134869697 + AT_rich Low_complexity Low_complexity 1 33 0 819 268 105 60 chr12 8916769 8917217 -134869238 - L1M4 LINE L1 -1911 4235 3768 258 32 0 0 chr12 8917237 8917268 -134869187 + (CA)n Simple_repeat Simple_repeat 2 32 0 1141 192 31 28 chr12 8917287 8917542 -134868913 - AluJb SINE Alu 0 312 57 834 99 14 57 chr12 8917802 8917943 -134868512 - Tigger5 DNA MER2_type -104 2219 2085 * 1171 224 9 22 chr12 8917939 8918171 -134868284 - Tigger5 DNA MER2_type -2091 232 4 297 276 69 14 chr12 8918173 8918318 -134868137 + L1M4 LINE L1 4485 4637 -1509 512 264 64 18 chr12 8918326 8918703 -134867752 + MLT1C LTR MaLR 6 461 -6 395 360 132 19 chr12 8918723 8919101 -134867354 + L1M4 LINE L1 4707 5127 -1019 1845 151 0 3 chr12 8919242 8919534 -134866921 - AluSx SINE Alu -21 291 1 822 189 0 78 chr12 8919669 8919697 -134866758 - AluJo SINE Alu -22 290 261 2604 131 43 11 chr12 8919697 8920141 -134866314 + LTR22A LTR ERVK 1 458 0 822 189 0 78 chr12 8920141 8920303 -134866152 - AluJo SINE Alu -51 261 115 1848 130 0 3 chr12 8920303 8920613 -134865842 + AluJb SINE Alu 1 309 0 846 141 7 0 chr12 8920622 8920757 -134865698 + AluJb SINE Alu 1 136 -176 30 0 0 0 chr12 8920757 8920787 -134865668 + AT_rich Low_complexity Low_complexity 1 30 0 686 221 0 0 chr12 8920787 8920914 -134865541 - AluJo SINE Alu -185 127 1 360 0 0 0 chr12 8920947 8920987 -134865468 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 746 170 7 0 chr12 8920989 8921136 -134865319 + C-rich Low_complexity Low_complexity 5 152 0 39 22 0 0 chr12 8921718 8921764 -134864691 + AT_rich Low_complexity Low_complexity 1 46 0 1883 157 0 0 chr12 8922173 8922472 -134863983 - AluSx SINE Alu -13 299 1 728 139 0 0 chr12 8922660 8922775 -134863680 - AluSp/q SINE Alu 0 313 199 1676 168 10 7 chr12 8922952 8923243 -134863212 + AluJb SINE Alu 1 292 -20 822 252 82 50 chr12 8924007 8924348 -134862107 + MLT2C1 LTR ERVL 44 395 -2 225 263 50 25 chr12 8924762 8924842 -134861613 - L1ME4a LINE L1 -104 6017 5936 216 0 0 0 chr12 8924883 8924907 -134861548 + (CA)n Simple_repeat Simple_repeat 2 25 0 962 175 24 0 chr12 8924951 8925117 -134861338 - AluJb SINE Alu -7 305 136 2095 144 0 0 chr12 8925119 8925425 -134861030 - AluSx SINE Alu -6 306 1 251 241 0 17 chr12 8925590 8925648 -134860807 + MER74B LTR ERVL 292 348 -274 693 281 61 40 chr12 8925663 8925876 -134860579 - MER74A LTR ERVL -306 252 32 2235 104 7 0 chr12 8925876 8926173 -134860282 - AluSq SINE Alu -14 299 1 693 281 61 40 chr12 8926173 8926187 -134860268 - MER74A LTR ERVL -526 32 20 1980 147 10 0 chr12 8926266 8926565 -134859890 - AluSx SINE Alu -10 302 1 858 165 0 0 chr12 8926587 8926720 -134859735 + AluJo SINE Alu 1 133 -169 938 141 60 0 chr12 8928213 8928362 -134858093 - FAM SINE Alu -18 167 10 349 82 279 0 chr12 8928379 8928440 -134858015 - MADE1 DNA Mariner 0 80 3 596 200 0 0 chr12 8928468 8928573 -134857882 + AluJo SINE Alu 131 235 -77 819 251 45 10 chr12 8928985 8929184 -134857271 - L1MCa LINE L1 -5684 742 537 801 153 62 157 chr12 8929231 8929505 -134856950 - AluJb SINE Alu -16 296 49 1713 205 113 98 chr12 8929564 8930328 -134856127 - LTR1B LTR ERV1 -39 981 3 348 194 119 0 chr12 8930328 8930382 -134856073 - AluS SINE Alu -246 62 1 1168 103 132 10 chr12 8930420 8930624 -134855831 - L1M3 LINE L1 -626 5557 5329 1596 167 14 22 chr12 8930729 8931004 -134855451 - AluJo SINE Alu -39 273 1 2169 125 0 13 chr12 8931351 8931656 -134854799 - AluSx SINE Alu -11 301 1 2338 98 0 3 chr12 8931709 8932014 -134854441 - AluSq SINE Alu -9 304 1 285 258 50 31 chr12 8932142 8932301 -134854154 - L1MEc LINE L1 -4674 1722 1561 349 205 26 0 chr12 8933130 8933208 -134853247 + MIR SINE MIR 183 262 0 663 263 34 0 chr12 8933428 8933603 -134852852 - MIR SINE MIR -10 252 72 2555 61 0 6 chr12 8934457 8934768 -134851687 + AluY SINE Alu 1 309 -2 572 290 80 9 chr12 8935386 8935610 -134850845 + LTR33 LTR ERVL 273 512 -9 2504 91 0 0 chr12 8936062 8936369 -134850086 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr12 8936444 8936473 -134849982 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 8936601 8936643 -134849812 + A-rich Low_complexity Low_complexity 5 46 0 3078 147 19 33 chr12 8936820 8937359 -134849096 - LTR26B LTR ERV1 0 531 1 2196 119 0 0 chr12 8937402 8937696 -134848759 + AluSx SINE Alu 1 294 -18 2553 66 0 0 chr12 8937803 8938105 -134848350 + AluSq SINE Alu 1 302 -11 872 137 0 0 chr12 8938370 8938494 -134847961 + FLAM_C SINE Alu 3 126 -7 2157 117 0 0 chr12 8938513 8938815 -134847640 + AluSx SINE Alu 2 303 0 2471 132 28 8 chr12 8938844 8939237 -134847218 + MSTA LTR MaLR 1 401 -27 1942 160 0 25 chr12 8939247 8939565 -134846890 - AluJo SINE Alu -1 311 2 1696 188 0 25 chr12 8940019 8940088 -134846367 + AluJo SINE Alu 1 70 -242 7780 68 13 11 chr12 8940088 8941093 -134845362 + LTR13 LTR ERVK 1 1007 0 1696 188 0 25 chr12 8941093 8941337 -134845118 + AluJo SINE Alu 70 306 -6 1650 186 6 19 chr12 8941386 8941698 -134844757 + AluJo SINE Alu 5 312 0 303 128 141 26 chr12 8941991 8942069 -134844386 + MER88 LTR ERVL 79 165 -299 * 700 233 92 33 chr12 8941999 8942239 -134844216 - MER74B LTR ERVL -72 550 297 21 0 0 0 chr12 8942392 8942413 -134844042 + AT_rich Low_complexity Low_complexity 1 21 0 220 347 11 23 chr12 8942433 8942609 -134843846 + GA-rich Low_complexity Low_complexity 2 175 0 1969 152 0 3 chr12 8942868 8943157 -134843298 + AluSx SINE Alu 1 288 -24 194 333 0 0 chr12 8943232 8943283 -134843172 - L2 LINE L2 -688 2626 2576 1494 213 3 45 chr12 8943283 8943457 -134842998 - MER90 LTR ERV1 0 614 461 2853 209 24 59 chr12 8943457 8943487 -134842968 + LTR62 LTR ERVK 2 32 -687 1906 128 42 3 chr12 8943487 8943776 -134842679 + AluSx SINE Alu 1 300 -12 2853 209 24 59 chr12 8943776 8944487 -134841968 + LTR62 LTR ERVK 32 717 -2 1494 213 3 45 chr12 8944487 8944665 -134841790 - MER90 LTR ERV1 -153 461 277 658 227 39 99 chr12 8944804 8945086 -134841369 - MER90 LTR ERV1 -310 265 1 193 329 14 0 chr12 8945172 8945242 -134841213 - L2 LINE L2 -843 2471 2401 31 0 0 0 chr12 8945279 8945310 -134841145 + AT_rich Low_complexity Low_complexity 1 31 0 1825 142 4 4 chr12 8945310 8945584 -134840871 - AluJo SINE Alu -26 286 13 188 198 37 86 chr12 8945600 8945681 -134840774 - MIR SINE MIR -105 157 81 2053 152 3 0 chr12 8945729 8946026 -134840429 + AluSx SINE Alu 1 298 -14 4220 159 28 23 chr12 8946056 8946854 -134839601 - L1MB7 LINE L1 -111 6073 5272 1741 181 3 7 chr12 8946868 8947177 -134839278 - AluJb SINE Alu -4 308 1 228 135 0 0 chr12 8947177 8947214 -134839241 - L1MB7 LINE L1 -863 5283 5247 2082 183 56 49 chr12 8947229 8947677 -134838778 - MER21A LTR ERV1 -19 912 462 1255 167 27 69 chr12 8947766 8947898 -134838557 - MER21A LTR ERV1 -185 468 332 2268 113 0 0 chr12 8947898 8948199 -134838256 + AluSx SINE Alu 1 301 -11 1255 167 27 69 chr12 8948199 8948387 -134838068 - MER21A LTR ERV1 -321 332 187 327 196 0 0 chr12 8948384 8948435 -134838020 - AluSc SINE Alu -117 182 132 * 609 200 17 8 chr12 8948436 8948556 -134837899 - FLAM_A SINE Alu -11 122 2 1191 150 39 6 chr12 8948556 8948874 -134837581 - MER39B LTR ERV1 -384 269 1 1910 229 9 9 chr12 8948875 8949325 -134837130 - L1MB7 LINE L1 -894 5252 4803 21 0 0 0 chr12 8949633 8949654 -134836801 + AT_rich Low_complexity Low_complexity 1 21 0 192 71 0 0 chr12 8949955 8949975 -134836480 + (TC)n Simple_repeat Simple_repeat 1 23 -5 2430 86 0 0 chr12 8949975 8950276 -134836179 - AluSq SINE Alu -12 301 1 192 71 0 0 chr12 8950276 8950283 -134836172 + (TC)n Simple_repeat Simple_repeat 22 28 0 803 176 0 0 chr12 8950283 8950414 -134836041 - FLAM_A SINE Alu -1 141 11 258 105 0 0 chr12 8951642 8951680 -134834775 + (A)n Simple_repeat Simple_repeat 1 38 0 185 188 138 50 chr12 8952749 8952829 -134833626 - MIR SINE MIR -146 116 30 601 338 84 20 chr12 8954512 8955009 -134831446 + L2 LINE L2 2265 2793 -521 1268 128 8 91 chr12 8955047 8955289 -134831166 - AluSg/x SINE Alu -6 304 83 1422 54 0 0 chr12 8955411 8955579 -134830876 + SVA Other Other 1219 1386 0 198 91 0 0 chr12 8955624 8955657 -134830798 + (A)n Simple_repeat Simple_repeat 1 33 0 1801 168 31 0 chr12 8955717 8956008 -134830447 - AluJb SINE Alu -12 300 1 2102 139 0 25 chr12 8956353 8956669 -134829786 - AluJb SINE Alu -4 308 1 1351 149 0 19 chr12 8956787 8957001 -134829454 - MER2 DNA MER2_type -135 210 1 1961 150 17 3 chr12 8957315 8957609 -134828846 - AluJo SINE Alu -13 299 2 410 267 87 7 chr12 8959054 8959204 -134827251 - MIR SINE MIR -1 261 100 788 161 0 0 chr12 8959234 8959358 -134827097 + FLAM_C SINE Alu 1 124 -9 7476 42 11 1 chr12 8959493 8960826 -134825629 + L1PA8 LINE L1 4830 6172 0 202 184 0 0 chr12 8961136 8961174 -134825281 + MIR3 SINE MIR 150 187 -21 2511 50 0 3 chr12 8961705 8962008 -134824447 - AluY SINE Alu -9 302 1 1136 184 23 97 chr12 8962436 8962650 -134823805 + L1MB5 LINE L1 5882 6050 -124 2547 48 0 13 chr12 8962650 8962965 -134823490 + AluY SINE Alu 1 311 0 1136 184 23 97 chr12 8962965 8963082 -134823373 + L1MB5 LINE L1 6050 6174 0 6378 115 33 12 chr12 8964454 8965403 -134821052 + LTR5 LTR ERVK 1 969 0 2255 84 28 0 chr12 8967528 8967815 -134818640 + AluSg SINE Alu 1 295 -15 342 258 136 0 chr12 8967931 8968063 -134818392 - MIR SINE MIR -7 255 106 1499 145 48 54 chr12 8968080 8968580 -134817875 + LTR47A LTR ERVL 2 450 -2 280 221 29 15 chr12 8968582 8968650 -134817805 - MIR SINE MIR -191 71 3 540 229 0 36 chr12 8968887 8969027 -134817428 - FLAM_A SINE Alu -2 140 6 1905 139 34 10 chr12 8969302 8969597 -134816858 + AluSx SINE Alu 9 310 -2 188 224 140 84 chr12 8969812 8969919 -134816536 + MIR SINE MIR 53 165 -97 189 0 0 0 chr12 8969979 8970000 -134816455 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1200 192 73 73 chr12 8970132 8970429 -134816026 - MSTD LTR MaLR 0 396 100 2211 126 0 16 chr12 8970429 8970746 -134815709 - AluSx SINE Alu 0 312 1 2030 118 4 4 chr12 8970753 8971032 -134815423 - AluSq SINE Alu -12 301 23 1200 192 73 73 chr12 8971032 8971122 -134815333 - MSTD LTR MaLR -301 95 1 24 60 0 30 chr12 8971166 8971202 -134815253 + AT_rich Low_complexity Low_complexity 1 36 -29 1426 178 85 0 chr12 8971202 8971461 -134814994 - AluJo SINE Alu -31 281 1 24 60 0 30 chr12 8971461 8971491 -134814964 + AT_rich Low_complexity Low_complexity 36 65 0 717 209 0 8 chr12 8971492 8971626 -134814829 + FLAM_C SINE Alu 1 133 0 2388 27 44 14 chr12 8972111 8972408 -134814047 - AluY SINE Alu -5 306 1 1147 124 0 0 chr12 8972518 8972671 -134813784 - AluSq SINE Alu -160 153 1 276 30 0 0 chr12 8973439 8973472 -134812983 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2319 94 0 7 chr12 8974503 8974802 -134811653 - AluSq SINE Alu -16 297 1 23 0 0 0 chr12 8975554 8975577 -134810878 + AT_rich Low_complexity Low_complexity 1 23 0 2223 111 0 0 chr12 8975577 8975865 -134810590 - AluSq SINE Alu -24 289 2 330 322 34 42 chr12 8975877 8975995 -134810460 - MIR3 SINE MIR -52 156 40 409 247 35 46 chr12 8977253 8977427 -134809028 + MIR SINE MIR 48 219 -43 2415 96 6 0 chr12 8978720 8979053 -134807402 - L1PB2 LINE L1 -3 6148 5814 2203 102 0 0 chr12 8979816 8980143 -134806312 + AluSx SINE Alu 1 327 0 187 270 0 0 chr12 8980204 8980241 -134806214 + MER5B DNA MER1_type 1 37 -141 2166 127 0 0 chr12 8981094 8981412 -134805043 + AluSx SINE Alu 1 318 0 450 294 83 34 chr12 8981574 8981839 -134804616 + L2 LINE L2 2184 2461 -853 2419 96 0 6 chr12 8981839 8982152 -134804303 + AluSq SINE Alu 1 311 -2 180 341 49 0 chr12 8982206 8982288 -134804167 + L2 LINE L2 2564 2649 -665 282 338 19 57 chr12 8982452 8982609 -134803846 + L2 LINE L2 2942 3092 -180 2067 116 0 3 chr12 8982793 8983078 -134803377 + AluSq SINE Alu 20 303 -10 32 26 0 0 chr12 8983550 8983589 -134802866 + AT_rich Low_complexity Low_complexity 1 39 0 2083 127 17 0 chr12 8983599 8983890 -134802565 + AluSx SINE Alu 5 300 -12 1815 146 53 26 chr12 8983945 8984247 -134802208 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 8984685 8984705 -134801750 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2484 34 41 0 chr12 8984988 8985279 -134801176 - AluY SINE Alu -8 303 1 1126 113 38 0 chr12 8985348 8985507 -134800948 - AluSg/x SINE Alu -15 295 131 426 85 0 0 chr12 8985507 8985523 -134800932 + (CA)n Simple_repeat Simple_repeat 1 75 0 426 85 0 0 chr12 8985523 8985582 -134800873 + (CA)n Simple_repeat Simple_repeat 2 60 0 2277 84 3 17 chr12 8985600 8985899 -134800556 - AluSq SINE Alu -18 295 1 679 209 11 37 chr12 8985909 8986096 -134800359 + L1MA9 LINE L1 6109 6290 -22 1154 82 7 0 chr12 8986191 8986337 -134800118 + AluSp SINE Alu 123 269 -44 1994 135 14 3 chr12 8986517 8986806 -134799649 + AluSx SINE Alu 1 292 -20 1604 170 13 35 chr12 8987277 8987477 -134798978 - AluJo SINE Alu -7 305 113 2087 133 7 3 chr12 8987477 8987779 -134798676 + AluSq SINE Alu 1 303 -10 1604 170 13 35 chr12 8987779 8987889 -134798566 - AluJo SINE Alu -199 113 2 578 258 28 65 chr12 8988153 8988370 -134798085 + MER112 DNA MER1_type 23 231 -29 1804 153 14 7 chr12 8988628 8988922 -134797533 - AluJo SINE Alu -1 311 16 541 146 115 92 chr12 8989996 8990126 -134796329 - FLAM_C SINE Alu 0 133 1 920 140 0 0 chr12 8991618 8991754 -134794701 - AluSp/q SINE Alu -1 312 177 1342 142 14 14 chr12 8992265 8992476 -134793979 - AluJo SINE Alu -15 297 87 273 57 0 0 chr12 8992775 8992810 -134793645 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2098 129 30 0 chr12 8993517 8993819 -134792636 - AluSx SINE Alu -1 311 1 215 343 0 0 chr12 8994627 8994694 -134791761 + L2 LINE L2 2992 3058 -214 930 144 0 0 chr12 8994826 8994958 -134791497 - FLAM_C SINE Alu -11 132 1 339 102 0 0 chr12 8995042 8995112 -134791343 + FLAM_A SINE Alu 85 154 0 2297 97 3 0 chr12 8995115 8995405 -134791050 - AluY SINE Alu -20 291 1 2310 115 0 3 chr12 8995405 8995709 -134790746 - AluSx SINE Alu -9 303 1 1054 157 0 0 chr12 8995728 8995881 -134790574 + FRAM SINE Alu 5 157 -19 22 56 0 0 chr12 8996575 8996611 -134789844 + AT_rich Low_complexity Low_complexity 1 36 0 1499 239 78 80 chr12 8996612 8996651 -134789804 + MLT1F1 LTR MaLR 6 44 -523 2004 127 0 3 chr12 8996651 8996956 -134789499 - AluSx SINE Alu 0 304 1 1499 239 78 80 chr12 8996956 8997451 -134789004 + MLT1F1 LTR MaLR 44 565 -2 202 157 48 36 chr12 8997475 8997534 -134788921 + (TA)n Simple_repeat Simple_repeat 1 63 -21 2503 134 53 7 chr12 8997534 8997945 -134788510 - MSTB1 LTR MaLR -2 430 1 202 157 48 36 chr12 8997945 8997968 -134788487 + (TA)n Simple_repeat Simple_repeat 63 84 0 258 317 10 10 chr12 8998158 8998259 -134788196 + GA-rich Low_complexity Low_complexity 3 103 0 2766 42 0 0 chr12 8998261 8998570 -134787885 + AluY SINE Alu 1 309 -2 638 92 122 0 chr12 8998578 8998676 -134787779 - THE1A LTR MaLR -245 110 1 7990 111 6 3 chr12 8998676 8999754 -134786701 - THE1A-int LTR MaLR 0 1580 496 2125 129 6 3 chr12 8999754 9000065 -134786390 - AluSp SINE Alu -1 312 1 7990 111 6 3 chr12 9000065 9000077 -134786378 - THE1A-int LTR MaLR -1084 496 486 677 279 48 14 chr12 9000300 9000590 -134785865 + AluJb SINE Alu 1 300 -2 222 62 0 0 chr12 9000651 9000683 -134785772 + (T)n Simple_repeat Simple_repeat 1 32 0 6528 70 20 37 chr12 9000728 9001699 -134784756 - SVA Other Other 0 1386 433 1240 106 43 67 chr12 9001763 9002208 -134784247 - SVA Other Other -520 866 433 5667 83 11 48 chr12 9002266 9003167 -134783288 - SVA Other Other -518 868 1 21 0 0 0 chr12 9003167 9003188 -134783267 + AT_rich Low_complexity Low_complexity 1 21 0 186 234 43 0 chr12 9003334 9003381 -134783074 + L3 LINE CR1 1525 1573 -4 2127 126 7 0 chr12 9003448 9003741 -134782714 - AluSx SINE Alu -14 298 4 1022 97 0 8 chr12 9004753 9004887 -134781568 + AluSq/x SINE Alu 1 133 -180 2309 119 3 0 chr12 9004891 9005202 -134781253 + AluSx SINE Alu 1 312 0 6839 174 40 48 chr12 9005223 9006040 -134780415 + L1 LINE L1 3721 4543 -1603 1849 157 35 0 chr12 9006040 9006326 -134780129 + AluJb SINE Alu 1 296 -16 6839 174 40 48 chr12 9006326 9006614 -134779841 + L1 LINE L1 4543 4832 -1314 204 40 0 0 chr12 9006621 9006646 -134779809 + (TG)n Simple_repeat Simple_repeat 2 26 0 2102 113 18 0 chr12 9006646 9006921 -134779534 - AluSx SINE Alu -25 287 5 6839 174 40 48 chr12 9006921 9007346 -134779109 + L1 LINE L1 4832 5241 -905 1947 150 0 13 chr12 9007346 9007646 -134778809 + AluJb SINE Alu 1 296 -16 6839 174 40 48 chr12 9007646 9007708 -134778747 + L1 LINE L1 5241 5302 -844 1697 243 48 42 chr12 9007710 9008267 -134778188 - LTR24B LTR ERV1 -7 569 33 2199 115 11 0 chr12 9008267 9008554 -134777901 - AluSq SINE Alu -23 290 1 1697 243 48 42 chr12 9008554 9008588 -134777867 - LTR24B LTR ERV1 -543 33 1 930 116 14 0 chr12 9008589 9008735 -134777720 + L1MA9 LINE L1 5304 5451 -861 3078 196 57 76 chr12 9008752 9009216 -134777239 + MER21B LTR ERV1 14 456 -407 1990 145 3 10 chr12 9009216 9009513 -134776942 - AluSx SINE Alu -17 295 1 3078 196 57 76 chr12 9009513 9009895 -134776560 + MER21B LTR ERV1 456 844 -19 2416 83 0 22 chr12 9009917 9010231 -134776224 - AluSx SINE Alu -5 307 1 4460 130 19 87 chr12 9010279 9010844 -134775611 + L1MA9 LINE L1 5447 6049 -263 2413 97 0 3 chr12 9010844 9011155 -134775300 + AluSx SINE Alu 1 310 -2 4460 130 19 87 chr12 9011155 9011307 -134775148 + L1MA9 LINE L1 6049 6093 -219 1748 167 13 20 chr12 9011307 9011606 -134774849 + AluJb SINE Alu 1 297 -15 4460 130 19 87 chr12 9011606 9011784 -134774671 + L1MA9 LINE L1 6093 6282 -30 1789 153 3 7 chr12 9012060 9012347 -134774108 + AluJb SINE Alu 1 286 -26 38 39 0 0 chr12 9012347 9012399 -134774056 + AT_rich Low_complexity Low_complexity 1 52 0 1832 243 84 16 chr12 9012705 9013269 -134773186 - L2 LINE L2 -446 2868 2253 2565 96 34 6 chr12 9013269 9013623 -134772832 + THE1B LTR MaLR 1 364 0 1832 243 84 16 chr12 9013623 9013700 -134772755 - L2 LINE L2 -1061 2253 2183 278 352 9 9 chr12 9013693 9013798 -134772657 + L2 LINE L2 3168 3272 0 * 653 161 42 17 chr12 9015606 9015724 -134770731 - FLAM_C SINE Alu -18 125 5 462 18 0 0 chr12 9016448 9016503 -134769952 + (CA)n Simple_repeat Simple_repeat 1 55 0 828 230 6 0 chr12 9016821 9016995 -134769460 - FRAM SINE Alu -1 175 1 22 0 0 0 chr12 9017022 9017044 -134769411 + AT_rich Low_complexity Low_complexity 1 22 0 1962 138 23 7 chr12 9017165 9017470 -134768985 + AluJb SINE Alu 1 310 -2 1120 194 95 11 chr12 9017591 9017875 -134768580 + L1ME1 LINE L1 5661 5968 -198 705 199 7 7 chr12 9017877 9018013 -134768442 + FLAM_C SINE Alu 4 139 -4 585 224 80 50 chr12 9018013 9018214 -134768241 + L1ME1 LINE L1 5960 6166 0 24 32 0 0 chr12 9018785 9018816 -134767639 + AT_rich Low_complexity Low_complexity 1 31 0 2276 125 0 0 chr12 9018870 9019182 -134767273 - AluSq SINE Alu -1 312 1 482 135 21 21 chr12 9019262 9019358 -134767097 + AluSg1 SINE Alu 2 97 -212 3320 86 2 29 chr12 9019501 9019529 -134766926 - THE1A-int LTR MaLR -1136 444 417 2254 86 0 7 chr12 9019529 9019838 -134766617 + AluSg1 SINE Alu 1 307 0 3320 86 2 29 chr12 9019838 9020264 -134766191 - THE1A-int LTR MaLR -1163 417 1 2588 83 23 9 chr12 9020264 9020614 -134765841 - THE1A LTR MaLR 0 355 1 1207 197 68 4 chr12 9020614 9020816 -134765639 + MSTB LTR MaLR 162 384 -42 1977 117 0 4 chr12 9020816 9021080 -134765375 - AluSq SINE Alu -50 263 1 1207 197 68 4 chr12 9021080 9021126 -134765329 + MSTB LTR MaLR 384 426 0 515 272 142 54 chr12 9021260 9021496 -134764959 - MLT1H1 LTR MaLR -16 533 319 2301 107 0 3 chr12 9021496 9021795 -134764660 - AluSx SINE Alu -14 298 1 515 272 142 54 chr12 9021795 9022009 -134764446 - MLT1H1 LTR MaLR -230 319 1 2557 64 0 3 chr12 9022125 9022437 -134764018 - AluY SINE Alu 0 311 1 1999 145 0 29 chr12 9022438 9022748 -134763707 - AluSx SINE Alu -11 301 1 2319 100 10 0 chr12 9022759 9023059 -134763396 - AluSx SINE Alu -9 303 1 254 315 87 17 chr12 9023085 9023431 -134763024 + L2 LINE L2 1893 2262 -1052 1244 207 104 85 chr12 9023433 9023979 -134762476 - LTR24B LTR ERV1 -5 630 28 1533 200 3 14 chr12 9023979 9024274 -134762181 - AluJb SINE Alu -20 292 1 2369 115 0 0 chr12 9024288 9024600 -134761855 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 9024607 9024629 -134761826 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 98 19 chr12 9025280 9025596 -134760859 + L2 LINE L2 2473 2813 -501 1731 174 45 0 chr12 9025650 9025820 -134760635 - AluJb SINE Alu -8 304 114 283 0 47 23 chr12 9025820 9025863 -134760592 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1731 174 45 0 chr12 9025863 9025979 -134760476 - AluJb SINE Alu -198 114 5 839 131 0 51 chr12 9026080 9026217 -134760238 - FLAM_C SINE Alu -3 130 1 2415 82 10 0 chr12 9026221 9026527 -134759928 - AluSp SINE Alu -2 311 3 2156 107 3 35 chr12 9027073 9027392 -134759063 - AluSx SINE Alu -3 309 1 4072 97 2 23 chr12 9027721 9028066 -134758389 + MER41A LTR ERV1 1 331 -223 2393 48 7 14 chr12 9028066 9028360 -134758095 - AluY SINE Alu -19 292 1 4072 97 2 23 chr12 9028360 9028580 -134757875 + MER41A LTR ERV1 331 554 0 1480 146 124 51 chr12 9028890 9029165 -134757290 - AluJb SINE Alu -16 296 2 1707 249 116 57 chr12 9029250 9030017 -134756438 + MER21B LTR ERV1 1 812 -51 2249 86 0 10 chr12 9030392 9030705 -134755750 + AluY SINE Alu 1 310 -1 838 87 17 0 chr12 9030723 9030838 -134755617 - AluSp SINE Alu -196 117 1 3116 114 7 4 chr12 9030839 9031302 -134755153 - L1MC1 LINE L1 -355 5978 5515 227 250 16 0 chr12 9031302 9031366 -134755089 + MLT1J2 LTR MaLR 73 137 -313 1125 188 59 86 chr12 9031366 9031649 -134754806 - L1MC/D LINE L1 -743 5403 5114 2181 121 0 0 chr12 9031649 9031946 -134754509 - AluSq SINE Alu -12 301 5 1125 188 59 86 chr12 9031946 9032076 -134754379 - L1MC/D LINE L1 -1032 5114 5078 2103 124 3 0 chr12 9032076 9032375 -134754080 - AluSx SINE Alu -12 300 1 1125 188 59 86 chr12 9032375 9032536 -134753919 - L1MC/D LINE L1 -1068 5078 4914 1850 152 21 7 chr12 9032536 9032825 -134753630 - AluSx SINE Alu -19 293 1 2026 202 70 98 chr12 9032846 9033513 -134752942 - L1MC/D LINE L1 -1793 4353 3705 229 175 0 0 chr12 9033512 9033552 -134752903 - L1MC/D LINE L1 -2813 3333 3294 * 1854 110 23 58 chr12 9033552 9033712 -134752743 - AluSx SINE Alu -11 301 156 2322 78 0 3 chr12 9033712 9034006 -134752449 - AluSc SINE Alu -14 295 3 1854 110 23 58 chr12 9034006 9034153 -134752302 - AluSx SINE Alu -156 156 5 240 111 0 0 chr12 9034157 9034193 -134752262 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 709 190 123 0 chr12 9034194 9034357 -134752098 - AluSg/x SINE Alu -9 303 121 2486 53 0 31 chr12 9034363 9034684 -134751771 - AluY SINE Alu 0 311 1 232 355 65 13 chr12 9034795 9034950 -134751505 - MER5A DNA MER1_type 0 189 27 188 250 23 0 chr12 9034980 9035024 -134751431 - MER5A DNA MER1_type 0 189 145 362 121 95 78 chr12 9035026 9035142 -134751313 - MER53 DNA DNA -1 188 71 200 368 0 0 chr12 9035388 9035475 -134750980 + T-rich Low_complexity Low_complexity 3 89 0 272 237 17 0 chr12 9035520 9035579 -134750876 + CT-rich Low_complexity Low_complexity 2 61 0 195 42 0 0 chr12 9035720 9035744 -134750711 + (A)n Simple_repeat Simple_repeat 1 24 0 2307 107 0 3 chr12 9036729 9037038 -134749417 - AluSx SINE Alu -4 308 1 21 71 0 0 chr12 9037353 9037395 -134749060 + AT_rich Low_complexity Low_complexity 1 42 0 640 227 47 41 chr12 9038397 9038545 -134747910 + MIR SINE MIR 1 152 -110 2260 121 0 0 chr12 9038545 9038851 -134747604 + AluSc SINE Alu 1 306 -3 640 227 47 41 chr12 9038851 9038874 -134747581 + MIR SINE MIR 152 173 -89 868 170 22 0 chr12 9039077 9039212 -134747243 - AluJo SINE Alu -61 251 114 1976 137 19 3 chr12 9039229 9039536 -134746919 + AluSx SINE Alu 1 312 0 205 296 35 17 chr12 9040082 9040197 -134746258 + MIR SINE MIR 102 218 -44 199 241 0 37 chr12 9040354 9040408 -134746047 - MER5A DNA MER1_type -95 94 43 197 245 0 20 chr12 9040366 9040415 -134746040 + MER5A DNA MER1_type 118 165 -24 * 2213 131 0 3 chr12 9041287 9041600 -134744855 - AluSx SINE Alu 0 312 1 336 244 100 11 chr12 9041796 9041886 -134744569 - MER5B DNA MER1_type -3 175 78 2190 94 40 7 chr12 9041935 9042234 -134744221 + AluSx SINE Alu 1 309 -3 683 184 0 0 chr12 9042234 9042348 -134744107 - AluJo/FLAM SINE Alu -184 118 5 2165 114 10 0 chr12 9042362 9042668 -134743787 - AluSq SINE Alu -4 309 1 480 239 168 19 chr12 9042906 9043115 -134743340 - MIR SINE MIR 0 262 23 248 49 49 0 chr12 9043153 9043194 -134743261 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 2389 81 13 0 chr12 9043669 9043967 -134742488 - AluSp SINE Alu -11 302 1 678 236 65 10 chr12 9044459 9044658 -134741797 - MIR SINE MIR -21 241 32 215 216 136 56 chr12 9045057 9045182 -134741273 - MIR SINE MIR -67 195 61 42 48 0 0 chr12 9045805 9045868 -134740587 + GC_rich Low_complexity Low_complexity 1 63 0 2095 140 7 0 chr12 9048754 9049054 -134737401 + AluSx SINE Alu 1 302 -10 2187 123 0 3 chr12 9049693 9049993 -134736462 + AluSx SINE Alu 1 299 -13 2240 126 7 0 chr12 9050975 9051285 -134735170 + AluSx SINE Alu 1 312 0 1349 184 43 35 chr12 9051309 9051564 -134734891 - AluJo SINE Alu -24 288 32 828 184 0 0 chr12 9051566 9051691 -134734764 - AluJo/FLAM SINE Alu -187 125 1 358 279 103 12 chr12 9051692 9051857 -134734598 + MIR SINE MIR 67 246 -16 2122 132 7 3 chr12 9052073 9052368 -134734087 + AluSx SINE Alu 1 296 -16 1235 189 70 12 chr12 9052683 9052942 -134733513 + AluJo SINE Alu 13 286 -26 261 0 0 0 chr12 9052942 9052971 -134733484 + (CA)n Simple_repeat Simple_repeat 2 30 0 2438 101 0 0 chr12 9053165 9053471 -134732984 + AluSx SINE Alu 1 306 -6 1854 186 51 70 chr12 9053586 9054059 -134732396 - MLT2C2 LTR ERVL 0 464 1 2244 113 0 16 chr12 9054103 9054413 -134732042 - AluSq SINE Alu -6 307 3 2121 133 0 10 chr12 9054415 9054724 -134731731 - AluSq SINE Alu -7 306 1 3556 199 127 13 chr12 9055018 9055793 -134730662 - MER21B LTR ERV1 0 863 1 1464 107 207 15 chr12 9057648 9057919 -134728536 + MER44D DNA MER2_type 17 609 0 1424 171 8 28 chr12 9057957 9058229 -134728226 - AluSx SINE Alu 0 301 35 2180 128 13 0 chr12 9058249 9058575 -134727880 - AluSx SINE Alu 0 330 1 860 160 0 14 chr12 9058815 9058959 -134727496 + FLAM_C SINE Alu 1 142 -1 1438 125 0 37 chr12 9059003 9059219 -134727236 + AluSg/x SINE Alu 91 298 -14 807 167 28 21 chr12 9059236 9059380 -134727075 + FRAM SINE Alu 18 162 -14 1284 20 33 0 chr12 9059493 9059645 -134726810 - L1PA3 LINE L1 0 6155 5999 572 101 0 71 chr12 9060140 9060239 -134726216 - AluSp/q SINE Alu -16 297 206 940 161 77 0 chr12 9060242 9060410 -134726045 + AluSp SINE Alu 131 311 -2 555 204 80 0 chr12 9062253 9062366 -134724089 + FLAM_A SINE Alu 13 134 -8 2044 116 24 3 chr12 9063195 9063489 -134722966 - AluSx SINE Alu -8 304 5 207 0 0 0 chr12 9064401 9064424 -134722031 + (T)n Simple_repeat Simple_repeat 1 23 0 917 115 0 0 chr12 9064695 9064825 -134721630 - FRAM SINE Alu -1 175 46 228 67 0 0 chr12 9065021 9065051 -134721404 + (T)n Simple_repeat Simple_repeat 1 30 0 217 208 208 0 chr12 9065052 9065124 -134721331 - MIR SINE MIR -53 209 123 539 174 114 0 chr12 9065163 9065295 -134721160 + L1MB7 LINE L1 6038 6184 0 2116 108 4 0 chr12 9066333 9066611 -134719844 + AluSc SINE Alu 1 279 -30 369 0 0 0 chr12 9066639 9066680 -134719775 + (TG)n Simple_repeat Simple_repeat 2 42 0 2690 188 19 61 chr12 9066687 9067325 -134719130 - L1MC1 LINE L1 -18 6315 5705 2287 92 0 0 chr12 9067330 9067638 -134718817 - AluSq SINE Alu 0 308 1 237 244 165 35 chr12 9068339 9068454 -134718001 - L2 LINE L2 -10 3303 3174 2161 86 11 0 chr12 9068529 9068809 -134717646 - AluSq SINE Alu -30 283 1 569 167 11 0 chr12 9069089 9069179 -134717276 - Tigger1 DNA MER2_type -1 2417 2327 * 12167 130 51 33 chr12 9069176 9069708 -134716747 - Tigger1 DNA MER2_type -276 2142 1621 2403 98 0 0 chr12 9069708 9070013 -134716442 - AluSx SINE Alu -7 305 1 12167 130 51 33 chr12 9070013 9071584 -134714871 - Tigger1 DNA MER2_type -797 1621 1 884 244 166 57 chr12 9071609 9071774 -134714681 - L1M3d LINE L1 -4516 2511 2365 1414 175 94 21 chr12 9071774 9071952 -134714503 - AluJb SINE Alu -5 307 99 270 0 0 0 chr12 9071952 9071982 -134714473 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1414 175 94 21 chr12 9071982 9072089 -134714366 - AluJb SINE Alu -213 99 1 884 244 166 57 chr12 9072089 9072537 -134713918 - L1M3d LINE L1 -4662 2365 1831 1503 254 141 21 chr12 9072575 9073086 -134713369 - L1M3d LINE L1 -6458 572 1 1600 133 17 0 chr12 9073240 9073480 -134712975 - AluSx SINE Alu -5 307 64 2130 166 39 52 chr12 9073655 9073825 -134712630 - L1MC1 LINE L1 -620 5713 5542 2150 134 0 0 chr12 9073825 9074117 -134712338 - AluSx SINE Alu -20 292 1 2130 166 39 52 chr12 9074117 9074468 -134711987 - L1MC1 LINE L1 -791 5542 5200 30 45 0 0 chr12 9074556 9074600 -134711855 + AT_rich Low_complexity Low_complexity 1 44 0 1719 167 128 8 chr12 9074633 9075090 -134711365 - L1MCa LINE L1 -3952 2474 2063 222 91 0 0 chr12 9075190 9075223 -134711232 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1935 129 21 14 chr12 9075226 9075506 -134710949 - AluSx SINE Alu -30 282 1 233 200 0 173 chr12 9075508 9075583 -134710872 - MER2 DNA MER2_type -1 344 283 1947 131 31 10 chr12 9075594 9075885 -134710570 + AluSx SINE Alu 1 297 -15 442 205 63 71 chr12 9075939 9076066 -134710389 - MER8 DNA MER2_type -89 150 25 1472 95 11 0 chr12 9126096 9126286 -134660169 - AluSp SINE Alu -121 192 1 2168 225 176 21 chr12 9126568 9126775 -134659680 - L1MD2 LINE L1 0 8042 7868 1469 157 142 19 chr12 9126775 9127043 -134659412 - AluJb SINE Alu -1 301 1 2168 225 176 21 chr12 9127043 9127076 -134659379 - L1MD2 LINE L1 -174 7868 7841 2242 99 0 3 chr12 9127076 9127370 -134659085 - AluSq SINE Alu -20 293 1 2168 225 176 21 chr12 9127370 9127963 -134658492 - L1MD2 LINE L1 -201 7841 7341 2223 114 7 0 chr12 9127963 9128271 -134658184 - AluSp SINE Alu -3 310 1 2168 225 176 21 chr12 9128271 9128379 -134658076 - L1MD2 LINE L1 -701 7341 6241 972 221 9 14 chr12 9128379 9128596 -134657859 - AluJo SINE Alu -91 221 6 1107 186 66 121 chr12 9129352 9129613 -134656842 - MLT1A2 LTR MaLR -2 372 98 851 165 0 0 chr12 9129613 9129740 -134656715 - FLAM_C SINE Alu -6 127 1 1412 196 46 14 chr12 9129745 9130030 -134656425 - AluJb SINE Alu -18 294 1 1107 186 66 121 chr12 9130030 9130143 -134656312 - MLT1A2 LTR MaLR -280 94 13 1855 166 10 3 chr12 9130167 9130463 -134655992 - AluSx SINE Alu -14 298 1 2255 92 14 0 chr12 9130607 9130902 -134655553 - L1PB2 LINE L1 -1 6150 5852 1963 152 0 14 chr12 9131048 9131184 -134655271 + AluSx SINE Alu 1 137 -175 2110 106 10 20 chr12 9131184 9131486 -134654969 + AluSg SINE Alu 1 299 -11 1963 152 0 14 chr12 9131486 9131646 -134654809 + AluSx SINE Alu 137 293 -19 955 104 6 104 chr12 9131718 9131756 -134654699 + L1PA16 LINE L1 6002 6042 -124 2143 73 4 4 chr12 9131756 9132029 -134654426 + AluY SINE Alu 1 273 -38 955 104 6 104 chr12 9132029 9132163 -134654292 + L1PA16 LINE L1 6042 6157 -9 1906 98 91 0 chr12 9132181 9132455 -134654000 - AluSg SINE Alu -11 299 1 2291 105 0 3 chr12 9133331 9133635 -134652820 + AluSx SINE Alu 3 305 -7 24 32 0 0 chr12 9134868 9134899 -134651556 + AT_rich Low_complexity Low_complexity 1 31 0 1727 137 19 72 chr12 9134910 9135103 -134651352 - AluSx SINE Alu -8 304 133 2182 80 4 0 chr12 9135103 9135379 -134651076 - L1PA6 LINE L1 0 6154 5878 1727 137 19 72 chr12 9135379 9135506 -134650949 - AluSx SINE Alu -179 133 1 2176 116 3 0 chr12 9135659 9135951 -134650504 - AluSp SINE Alu -20 293 1 2096 136 0 0 chr12 9135951 9136252 -134650203 - AluSx SINE Alu -11 301 1 2240 90 10 7 chr12 9136579 9136880 -134649575 + AluSx SINE Alu 5 306 -6 1377 179 86 14 chr12 9137018 9137297 -134649158 - AluJo SINE Alu -13 299 1 293 264 147 56 chr12 9137698 9137895 -134648560 + L2 LINE L2 3095 3309 -4 2312 102 7 0 chr12 9138017 9138311 -134648144 - AluSx SINE Alu -16 296 1 1403 178 102 29 chr12 9138462 9138776 -134647679 + MER44D DNA MER2_type 2 608 -1 351 0 0 0 chr12 9138777 9138816 -134647639 + (TG)n Simple_repeat Simple_repeat 1 39 0 241 172 47 0 chr12 9138817 9138881 -134647574 + (TA)n Simple_repeat Simple_repeat 1 67 0 1900 133 25 7 chr12 9138921 9139206 -134647249 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr12 9139286 9139308 -134647147 + AT_rich Low_complexity Low_complexity 1 22 0 2032 111 24 0 chr12 9139479 9139767 -134646688 - AluSc SINE Alu -14 295 1 273 248 17 43 chr12 9139834 9139951 -134646504 - L1ME LINE L1 -244 6271 6158 1060 224 23 14 chr12 9140525 9140744 -134645711 - MER58A DNA MER1_type -3 221 1 258 195 115 0 chr12 9140857 9140944 -134645511 - MER5C DNA MER1_type 0 324 228 370 286 50 8 chr12 9140956 9141075 -134645380 - MER5C DNA MER1_type -200 124 1 1983 112 4 0 chr12 9142549 9142816 -134643639 + AluSx SINE Alu 20 287 -25 276 260 13 0 chr12 9142884 9142961 -134643494 + L1M4 LINE L1 5004 5081 -1065 195 42 0 0 chr12 9142974 9142998 -134643457 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2311 92 0 16 chr12 9143000 9143305 -134643150 - AluSq SINE Alu -13 300 1 664 324 121 4 chr12 9143354 9143610 -134642845 - MLT1H1 LTR MaLR -214 341 56 300 175 0 0 chr12 9143680 9143737 -134642718 + L1 LINE L1 4777 4833 -1313 1521 274 96 54 chr12 9144756 9145031 -134641424 + L2 LINE L2 2100 2362 -952 201 74 0 0 chr12 9145031 9145058 -134641397 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1521 274 96 54 chr12 9145058 9145070 -134641385 + L2 LINE L2 2362 2372 -942 1598 149 7 76 chr12 9145070 9145219 -134641236 - AluJb SINE Alu -32 280 161 2063 134 7 0 chr12 9145219 9145509 -134640946 - AluSx SINE Alu -19 293 2 1598 149 7 76 chr12 9145509 9145660 -134640795 - AluJb SINE Alu -151 161 1 1521 274 96 54 chr12 9145660 9145986 -134640469 + L2 LINE L2 2372 2750 -564 1464 157 71 48 chr12 9145986 9146131 -134640324 + AluJb SINE Alu 1 141 -171 1889 160 7 7 chr12 9146131 9146431 -134640024 + AluSx SINE Alu 1 300 -12 1464 157 71 48 chr12 9146431 9146579 -134639876 + AluJb SINE Alu 141 301 -11 1521 274 96 54 chr12 9146579 9146670 -134639785 + L2 LINE L2 2750 2836 -478 420 227 31 16 chr12 9146675 9146803 -134639652 + L1ME3A LINE L1 5839 5968 -202 1968 131 34 7 chr12 9146944 9147241 -134639214 - AluSx SINE Alu -7 305 1 1084 172 252 48 chr12 9147497 9147747 -134638708 + AluJo SINE Alu 1 301 -1 286 263 70 72 chr12 9148017 9148219 -134638236 - L1ME LINE L1 -527 6037 5835 896 111 0 15 chr12 9148219 9148354 -134638101 - FLAM_C SINE Alu 0 133 1 286 263 70 72 chr12 9148354 9148524 -134637931 - L1ME LINE L1 -729 5835 5666 769 214 0 0 chr12 9148551 9148677 -134637778 - FLAM_C SINE Alu -16 127 2 387 299 101 37 chr12 9148681 9149136 -134637319 - L1ME LINE L1 -872 5668 5185 2054 120 11 0 chr12 9149373 9149656 -134636799 + AluSx SINE Alu 1 286 -26 282 258 26 17 chr12 9149714 9149890 -134636565 - L1ME LINE L1 -689 5473 5297 265 220 202 18 chr12 9149893 9150002 -134636453 - MER20B DNA MER1_type -654 129 1 7806 40 17 0 chr12 9150203 9151185 -134635270 - L1PA5 LINE L1 0 6154 5168 1057 185 32 5 chr12 9151325 9151514 -134634941 + AluJb SINE Alu 1 194 -118 2238 103 0 15 chr12 9151671 9152000 -134634455 - LTR17 LTR ERV1 -456 324 1 2502 49 0 6 chr12 9152000 9152307 -134634148 - HERV17 LTR ERV1 0 8626 6834 302 77 0 0 chr12 9152283 9152322 -134634133 - HERV17 LTR ERV1 -1078 7548 7510 * 1158 82 32 0 chr12 9152318 9152476 -134633979 - HERV17 LTR ERV1 -1479 7147 6985 * 41666 53 15 3 chr12 9152467 9158220 -134628235 - HERV17 LTR ERV1 -2724 5902 1 3684 89 42 4 chr12 9158220 9158726 -134627729 - LTR17 LTR ERV1 0 780 256 351 323 94 45 chr12 9158728 9159417 -134627038 - L1ME LINE L1 -2409 4131 3280 22 35 0 0 chr12 9159530 9159559 -134626896 + AT_rich Low_complexity Low_complexity 1 29 0 322 237 75 16 chr12 9159657 9159845 -134626610 - L1MDa LINE L1 -3890 2650 2453 324 255 7 128 chr12 9160165 9160228 -134626227 - L2 LINE L2 0 3313 3275 2059 120 34 0 chr12 9160228 9160519 -134625936 - AluSq SINE Alu -12 301 1 324 255 7 128 chr12 9160519 9160596 -134625859 - L2 LINE L2 -38 3275 3190 3786 157 55 70 chr12 9160896 9161764 -134624691 - MER21A LTR ERV1 -3 860 1 2191 125 13 0 chr12 9162136 9162441 -134624014 - AluSx SINE Alu -3 309 1 21 0 0 0 chr12 9163231 9163252 -134623203 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr12 9167468 9167504 -134618951 + (T)n Simple_repeat Simple_repeat 1 36 0 2123 121 0 3 chr12 9171316 9171613 -134614842 + AluSq SINE Alu 1 296 -17 853 158 107 23 chr12 9173617 9173794 -134612661 - Tigger3(Golem) DNA MER2_type -23 3006 2815 2054 109 31 3 chr12 9173808 9174102 -134612353 + AluSx SINE Alu 1 302 -10 1267 111 34 58 chr12 9174109 9174317 -134612138 + AluSx SINE Alu 2 204 -108 1742 147 43 0 chr12 9174324 9174603 -134611852 + AluJb SINE Alu 1 291 -21 363 283 123 37 chr12 9174653 9175051 -134611404 - LTR16B LTR ERVL -1 463 12 531 338 37 37 chr12 9175139 9175467 -134610988 - HERVL LTR ERVL -2464 3190 2863 2346 68 0 4 chr12 9175532 9175813 -134610642 + AluSg SINE Alu 21 300 -10 363 315 168 0 chr12 9175819 9175962 -134610493 - HERVL LTR ERVL -2146 2850 2684 1743 167 161 13 chr12 9175963 9176335 -134610120 - MSTA LTR MaLR -1 427 1 5459 184 45 9 chr12 9176335 9177332 -134609123 - MSTA-int LTR MaLR 0 1651 619 38093 92 36 21 chr12 9177332 9183894 -134602561 + HERV9 LTR ERV1 17 4944 0 559 175 73 32 chr12 9183894 9184098 -134602357 + HERV9 LTR ERV1 728 1138 -5758 330 180 0 0 chr12 9184100 9184161 -134602294 + HERV9 LTR ERV1 7504 7564 -835 * 7736 100 69 87 chr12 9184157 9186347 -134600108 + pTR5 LTR ERV1 504 2438 0 2232 76 0 0 chr12 9186364 9186654 -134599801 - AluY SINE Alu -21 290 1 789 206 6 6 chr12 9186657 9186817 -134599638 - MSTA-int LTR MaLR -1040 611 452 * 1513 135 37 0 chr12 9186806 9187051 -134599404 - MSTA-int LTR MaLR -1397 254 1 2200 132 116 0 chr12 9187051 9187423 -134599032 - MSTA LTR MaLR -13 415 1 1715 130 0 88 chr12 9187684 9187830 -134598625 + AluSx SINE Alu 1 108 -204 2175 122 0 0 chr12 9187830 9188142 -134598313 + AluSx SINE Alu 1 312 0 1715 130 0 88 chr12 9188142 9188302 -134598153 + AluSx SINE Alu 108 280 -32 252 111 0 0 chr12 9188366 9188411 -134598044 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 3179 135 86 2 chr12 9188469 9188941 -134597514 - L1MB1 LINE L1 -1 6167 5637 228 86 0 0 chr12 9188941 9188976 -134597479 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3179 135 86 2 chr12 9188976 9189075 -134597380 - L1MB1 LINE L1 -531 5637 5548 321 333 82 6 chr12 9189257 9189428 -134597027 - L1ME4a LINE L1 -169 5952 5769 1783 152 3 21 chr12 9189499 9189789 -134596666 - AluJo SINE Alu -24 288 4 540 245 0 0 chr12 9189863 9189961 -134596494 + FLAM_A SINE Alu 3 100 -42 7462 46 3 0 chr12 9189961 9191573 -134594882 + L1PA5 LINE L1 4555 6154 0 3058 55 0 0 chr12 9191573 9191975 -134594480 + L1PA6 LINE L1 5770 6176 0 21 36 0 0 chr12 9192387 9192415 -134594040 + AT_rich Low_complexity Low_complexity 1 28 0 2200 84 14 3 chr12 9192426 9192722 -134593733 + AluSq SINE Alu 1 299 -14 3022 143 51 8 chr12 9193197 9193687 -134592768 - MER9 LTR ERVK 0 511 1 2194 70 0 20 chr12 9194056 9194358 -134592097 + AluY SINE Alu 1 296 -15 333 102 45 23 chr12 9194980 9195068 -134591387 + (TA)n Simple_repeat Simple_repeat 1 90 0 2823 74 112 0 chr12 9195073 9195476 -134590979 + LTR7 LTR ERV1 1 448 -2 19743 103 16 33 chr12 9195478 9198519 -134587936 + HERVH LTR ERV1 1 2987 -4726 917 135 20 0 chr12 9198513 9198661 -134587794 + HERVH LTR ERV1 3140 3290 -4423 * 3617 89 4 6 chr12 9198651 9199154 -134587301 + HERVH LTR ERV1 3492 3993 -3720 2955 151 0 2 chr12 9199156 9199774 -134586681 + HERVH LTR ERV1 4488 5149 -2564 1414 130 19 0 chr12 9199775 9199991 -134586464 + HERVH LTR ERV1 5600 5819 -1894 2299 99 59 13 chr12 9199991 9200364 -134586091 + HERVH LTR ERV1 7324 7713 0 2897 71 101 0 chr12 9200364 9200771 -134585684 + LTR7 LTR ERV1 1 448 -2 1710 93 4 4 chr12 9200920 9201157 -134585298 - AluSg SINE Alu -15 295 59 1722 115 4 4 chr12 9201157 9201399 -134585056 + AluSp SINE Alu 10 252 -61 1009 112 0 0 chr12 9201399 9201542 -134584913 + AluSg/x SINE Alu 165 307 -3 262 200 0 0 chr12 9201673 9201718 -134584737 - L2 LINE L2 -7 3306 3262 2101 62 31 14 chr12 9201781 9202070 -134584385 + AluY SINE Alu 1 294 -17 350 103 103 12 chr12 9202710 9202875 -134583580 + (TA)n Simple_repeat Simple_repeat 1 180 0 206 138 17 69 chr12 9202883 9202941 -134583514 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 310 159 91 57 chr12 9202947 9203035 -134583420 - L1MC4 LINE L1 -1340 6702 6612 327 112 96 0 chr12 9203038 9203163 -134583292 + (TA)n Simple_repeat Simple_repeat 1 137 0 2283 77 8 2 chr12 9203168 9203525 -134582930 + LTR7 LTR ERV1 1 448 -2 213 132 0 26 chr12 9203532 9203570 -134582885 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2211 80 7 7 chr12 9203577 9203876 -134582579 - AluSp SINE Alu -14 299 1 23 0 0 0 chr12 9203878 9203901 -134582554 + AT_rich Low_complexity Low_complexity 1 23 0 461 90 104 0 chr12 9203937 9204004 -134582451 - MLT2D LTR ERVL -51 363 290 * 585 151 0 11 chr12 9204003 9204096 -134582359 - MLT1C LTR MaLR -375 92 1 26 0 0 0 chr12 9204952 9204978 -134581477 + AT_rich Low_complexity Low_complexity 1 26 0 2134 95 3 13 chr12 9204978 9205284 -134581171 + AluSq SINE Alu 1 303 -10 279 0 0 0 chr12 9205285 9205316 -134581139 + (TA)n Simple_repeat Simple_repeat 2 32 0 278 125 0 0 chr12 9205852 9205892 -134580563 + Alu SINE Alu 8 47 -254 1437 106 0 0 chr12 9205892 9206090 -134580365 + AluSg/x SINE Alu 98 295 -17 431 249 11 126 chr12 9206282 9206632 -134579823 - L1MCa LINE L1 -5057 1884 1575 1590 200 0 16 chr12 9206634 9206949 -134579506 - AluJb SINE Alu -2 310 1 2137 251 54 62 chr12 9207020 9207865 -134578590 - L1MCa LINE L1 -4892 1531 693 1178 273 65 58 chr12 9207908 9208356 -134578099 - L1MCa LINE L1 -5824 599 156 219 36 0 0 chr12 9208356 9208384 -134578071 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 2117 93 0 7 chr12 9208384 9208664 -134577791 - AluSg SINE Alu -32 278 1 1178 273 65 58 chr12 9208664 9208752 -134577703 - L1MCa LINE L1 -6266 157 58 1612 160 31 20 chr12 9208767 9209060 -134577395 - AluJo SINE Alu -11 301 6 1917 118 59 0 chr12 9209138 9209426 -134577029 - AluSq SINE Alu -3 310 6 264 268 49 0 chr12 9209473 9209555 -134576900 - L1ME LINE L1 -292 5829 5744 361 266 104 86 chr12 9209633 9209960 -134576495 + MLT1K LTR MaLR 84 416 -172 1646 146 10 30 chr12 9210151 9210343 -134576112 - AluJo SINE Alu -11 301 116 3267 149 29 91 chr12 9210343 9210614 -134575841 + LTR8 LTR ERV1 1 287 -404 2533 40 0 0 chr12 9210614 9210914 -134575541 + AluY SINE Alu 1 300 -11 3267 149 29 91 chr12 9210914 9211379 -134575076 + LTR8 LTR ERV1 287 691 0 1646 146 10 30 chr12 9211379 9211487 -134574968 - AluJo SINE Alu -196 116 7 1898 149 16 7 chr12 9211545 9211854 -134574601 + AluJb SINE Alu 1 312 0 348 312 37 17 chr12 9211888 9212093 -134574362 - L1ME LINE L1 -459 5662 5480 2080 106 0 26 chr12 9212093 9212395 -134574060 - AluSg SINE Alu -16 294 1 278 253 0 38 chr12 9213229 9213308 -134573147 + L2 LINE L2 3192 3267 -46 243 0 0 0 chr12 9214407 9214434 -134572021 + (T)n Simple_repeat Simple_repeat 1 27 0 29 0 0 0 chr12 9214515 9214544 -134571911 + AT_rich Low_complexity Low_complexity 1 29 0 5608 131 9 37 chr12 9214562 9216633 -134569822 - L1MA3 LINE L1 -27 7692 5740 1078 131 0 27 chr12 9216634 9216799 -134569656 - AluSg/x SINE Alu -16 294 133 1848 143 13 0 chr12 9216799 9217100 -134569355 - AluSx SINE Alu -4 308 4 1078 131 0 27 chr12 9217100 9217117 -134569338 - AluSg/x SINE Alu -177 133 117 1059 115 12 107 chr12 9217129 9217243 -134569212 - L1MA3 LINE L1 -4845 2720 2640 1845 125 14 0 chr12 9217243 9217524 -134568931 + AluSx SINE Alu 1 285 -27 1059 115 12 107 chr12 9217524 9217653 -134568802 - L1MA3 LINE L1 -4925 2640 2500 * 9415 146 52 3 chr12 9217636 9219429 -134567026 - L1MA3 LINE L1 -5270 2295 16 1900 128 30 3 chr12 9219565 9219861 -134566594 + AluJb SINE Alu 1 304 -8 2073 140 0 0 chr12 9220228 9220536 -134565919 - AluSx SINE Alu -4 308 1 1479 152 35 58 chr12 9221126 9221436 -134565019 - AluJb SINE Alu -9 303 1 3298 159 19 90 chr12 9221755 9221921 -134564534 - LTR8 LTR ERV1 0 691 515 2495 64 0 0 chr12 9221921 9222234 -134564221 - AluSp SINE Alu 0 313 1 3298 159 19 90 chr12 9222234 9222811 -134563644 - LTR8 LTR ERV1 -176 515 1 947 109 65 0 chr12 9222812 9222950 -134563505 - HUERS-P1 LTR ERV1 -1 6262 6116 417 145 48 0 chr12 9222950 9223033 -134563422 - LTR8A LTR ERV1 -640 87 1 1985 138 3 0 chr12 9223159 9223457 -134562998 - AluSx SINE Alu -13 299 1 1921 118 33 10 chr12 9223575 9223880 -134562575 - AluSx SINE Alu 0 312 1 2420 66 0 0 chr12 9225916 9226219 -134560236 + AluY SINE Alu 15 303 -8 2319 96 3 0 chr12 9226666 9226967 -134559488 - AluSq SINE Alu -11 302 1 1926 137 17 3 chr12 9227210 9227503 -134558952 - AluSx SINE Alu -15 297 1 2111 99 3 42 chr12 9227784 9228097 -134558358 + AluSg SINE Alu 1 301 -9 2608 51 0 10 chr12 9228815 9229128 -134557327 + AluY SINE Alu 1 310 -1 624 291 62 9 chr12 9229497 9229707 -134556748 - MIR SINE MIR -40 222 2 2175 101 10 7 chr12 9229909 9230231 -134556224 - AluSp SINE Alu 0 313 1 460 139 0 14 chr12 9230263 9230335 -134556120 + AluS SINE Alu 2 72 -237 25 0 0 0 chr12 9230568 9230593 -134555862 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr12 9230653 9230681 -134555774 + AT_rich Low_complexity Low_complexity 1 28 0 785 266 14 56 chr12 9230692 9230978 -134555477 + AluSp SINE Alu 24 297 -16 1096 162 21 87 chr12 9230994 9231087 -134555368 - AluJo SINE Alu -87 225 127 1831 124 35 0 chr12 9231087 9231346 -134555109 - AluSx SINE Alu -13 299 32 1096 162 21 87 chr12 9231346 9231493 -134554962 - AluJo SINE Alu -185 127 1 2353 49 0 11 chr12 9232021 9232349 -134554106 - AluY SINE Alu 0 325 1 899 95 0 0 chr12 9233513 9233629 -134552826 + AluSq/x SINE Alu 1 116 -197 24 0 0 0 chr12 9233629 9233653 -134552802 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr12 9233703 9233725 -134552730 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2485 75 0 7 chr12 9233895 9234203 -134552252 + AluY SINE Alu 1 306 -5 1079 163 27 0 chr12 9234207 9234428 -134552027 + MER33 DNA MER1_type 40 266 -58 2642 33 0 7 chr12 9235396 9235701 -134550754 + AluY SINE Alu 1 303 -8 301 293 138 27 chr12 9235717 9235905 -134550550 + MLT1H LTR MaLR 195 403 -146 307 135 19 0 chr12 9236617 9236669 -134549786 - MADE1 DNA Mariner 0 80 28 542 216 85 80 chr12 9236779 9236864 -134549591 + MER69A DNA AcHobo 1 84 -2442 972 82 0 0 chr12 9236864 9236999 -134549456 + (TTCC)n Simple_repeat Simple_repeat 3 137 0 2188 108 3 0 chr12 9236999 9237287 -134549168 - AluSg SINE Alu -21 289 1 542 216 85 80 chr12 9237287 9237376 -134549079 + MER69A DNA AcHobo 83 177 0 1186 141 22 5 chr12 9237762 9237946 -134548509 + AluSg/x SINE Alu 106 292 -20 22 0 0 0 chr12 9238026 9238048 -134548407 + AT_rich Low_complexity Low_complexity 1 22 0 1157 243 21 0 chr12 9238219 9238507 -134547948 - AluSc SINE Alu -5 294 1 207 100 0 0 chr12 9239399 9239429 -134547026 + (T)n Simple_repeat Simple_repeat 1 30 0 328 269 34 5 chr12 9239715 9239923 -134546532 + Charlie1 DNA MER1_type 2537 2750 -11 336 341 5 29 chr12 9240016 9240221 -134546234 - AluY SINE Alu 0 301 102 787 248 11 56 chr12 9240389 9240507 -134545948 + L1ME1 LINE L1 4878 5000 -1146 1576 216 7 0 chr12 9240507 9240808 -134545647 + AluJo SINE Alu 1 303 -9 787 248 11 56 chr12 9240808 9240959 -134545496 + L1ME1 LINE L1 5000 5135 -1011 3242 176 46 37 chr12 9240967 9241619 -134544836 - MER21B LTR ERV1 -3 860 203 1601 138 44 40 chr12 9241634 9241909 -134544546 - MER21B LTR ERV1 -572 291 16 1427 156 48 30 chr12 9241941 9242211 -134544244 + Tigger3b DNA MER2_type 13 287 -944 915 191 0 24 chr12 9242216 9242384 -134544071 - FAM SINE Alu -21 164 1 2489 98 36 10 chr12 9242391 9242778 -134543677 + Tigger3b DNA MER2_type 287 683 -548 1244 139 5 0 chr12 9242782 9242969 -134543486 + AluSg/x SINE Alu 118 305 -5 2656 130 57 116 chr12 9242983 9243546 -134542909 + Tigger3b DNA MER2_type 701 1230 -1 2192 211 20 62 chr12 9243546 9244130 -134542325 + L1ME1 LINE L1 5602 6161 -5 712 181 35 0 chr12 9244152 9244268 -134542187 + FLAM_A SINE Alu 1 120 -13 276 149 0 0 chr12 9244271 9244318 -134542137 + (TATG)n Simple_repeat Simple_repeat 2 48 0 284 390 15 0 chr12 9244322 9244458 -134541997 - L2 LINE L2 -676 2638 2501 735 176 0 8 chr12 9244477 9244596 -134541859 + FLAM_C SINE Alu 1 118 -25 213 330 57 0 chr12 9244612 9244700 -134541755 - L2 LINE L2 -836 2478 2386 20786 158 55 30 chr12 9244754 9245658 -134540797 - L1MA3 LINE L1 -473 7251 6372 711 119 9 28 chr12 9245658 9245767 -134540688 - FLAM_C SINE Alu 0 143 37 20786 158 55 30 chr12 9245767 9247068 -134539387 - L1MA3 LINE L1 -1352 6372 5106 2093 96 7 0 chr12 9247068 9247339 -134539116 - AluSq SINE Alu 0 313 41 20786 158 55 30 chr12 9247339 9247449 -134539006 - L1MA3 LINE L1 -2618 5106 5000 2017 145 0 3 chr12 9247449 9247746 -134538709 + AluSx SINE Alu 1 296 -16 20786 158 55 30 chr12 9247746 9250512 -134535943 - L1MA3 LINE L1 -2724 5000 1882 2422 120 29 56 chr12 9250512 9250886 -134535569 + THE1B LTR MaLR 1 364 0 20786 158 55 30 chr12 9250886 9252807 -134533648 - L1MA3 LINE L1 -5842 1882 12 239 318 182 0 chr12 9253625 9253713 -134532742 - L2 LINE L2 0 3272 3169 1177 146 0 0 chr12 9254161 9254319 -134532136 - FRAM SINE Alu -4 162 5 251 267 9 48 chr12 9255102 9255210 -134531245 + CT-rich Low_complexity Low_complexity 1 103 0 1491 209 83 23 chr12 9255533 9255883 -134530572 + MLT1A2 LTR MaLR 4 374 0 183 188 0 0 chr12 9256403 9256451 -134530004 + A-rich Low_complexity Low_complexity 3 50 0 1894 131 13 45 chr12 9256792 9257105 -134529350 + AluSx SINE Alu 1 303 -9 264 330 144 0 chr12 9257452 9257617 -134528838 + MIR3 SINE MIR 1 193 -15 264 279 23 23 chr12 9257619 9257705 -134528750 - MIR SINE MIR -87 175 90 884 277 127 4 chr12 9257767 9258180 -134528275 + L2 LINE L2 2727 3203 -110 3249 138 37 42 chr12 9258187 9258349 -134528106 - L1MA5 LINE L1 -63 6237 6076 2209 138 3 37 chr12 9258349 9258698 -134527757 + MER1B DNA MER1_type 1 337 0 3249 138 37 42 chr12 9258698 9259001 -134527454 - L1MA5 LINE L1 -224 6076 5773 2297 55 4 0 chr12 9259001 9259273 -134527182 - L1PA7 LINE L1 -4 6150 5878 3249 138 37 42 chr12 9259273 9259407 -134527048 - L1MA5 LINE L1 -527 5773 5640 28 95 0 0 chr12 9259430 9259514 -134526941 + AT_rich Low_complexity Low_complexity 1 84 0 1502 180 3 44 chr12 9259582 9259876 -134526579 + AluJo SINE Alu 1 282 -30 6370 25 0 0 chr12 9259968 9260659 -134525796 + L1PA3 LINE L1 5464 6154 -1 362 141 12 24 chr12 9260922 9261007 -134525448 - Zaphod DNA AcHobo -3041 990 907 315 0 0 0 chr12 9261417 9261452 -134525003 + (TG)n Simple_repeat Simple_repeat 2 36 0 1731 173 0 0 chr12 9261496 9261762 -134524693 + AluJb SINE Alu 1 266 -46 234 0 0 0 chr12 9261767 9261793 -134524662 + (CAA)n Simple_repeat Simple_repeat 2 27 0 36 23 0 0 chr12 9262343 9262386 -134524069 + AT_rich Low_complexity Low_complexity 1 43 0 3045 167 21 2 chr12 9262536 9263022 -134523433 - LTR42 LTR ERVL 0 495 1 1460 193 86 12 chr12 9263507 9263964 -134522491 + L1MB3 LINE L1 5660 6176 -7 2102 117 13 10 chr12 9264305 9264604 -134521851 - AluSx SINE Alu -10 302 3 355 247 0 0 chr12 9264619 9264696 -134521759 - MIR SINE MIR -113 149 73 812 96 29 0 chr12 9265362 9265466 -134520989 + FLAM_C SINE Alu 21 127 -16 2023 136 3 3 chr12 9265657 9265952 -134520503 - AluJb SINE Alu -13 299 5 199 241 106 128 chr12 9265961 9266023 -134520432 + MIR SINE MIR 50 112 -150 1983 153 0 3 chr12 9266023 9266317 -134520138 - AluSx SINE Alu -19 293 1 199 241 106 128 chr12 9266317 9266395 -134520060 + MIR SINE MIR 112 187 -75 1256 113 11 0 chr12 9266402 9266579 -134519876 + AluSq SINE Alu 125 303 -10 2192 96 7 7 chr12 9268386 9268679 -134517776 + AluSc SINE Alu 6 298 -11 259 197 40 26 chr12 9268866 9268942 -134517513 + GA-rich Low_complexity Low_complexity 5 81 0 221 0 35 0 chr12 9269017 9269046 -134517409 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2060 123 3 7 chr12 9269997 9270289 -134516166 + AluSx SINE Alu 1 291 -21 2180 97 0 29 chr12 9270775 9271084 -134515371 + AluSg SINE Alu 1 300 -10 180 0 0 0 chr12 9271261 9271281 -134515174 + (A)n Simple_repeat Simple_repeat 1 20 0 1559 120 20 162 chr12 9271525 9271876 -134514579 + AluJb SINE Alu 1 301 -1 1108 277 69 6 chr12 9272413 9272774 -134513681 + L1MC4a LINE L1 5523 5906 -1902 22 0 0 0 chr12 9272940 9272962 -134513493 + AT_rich Low_complexity Low_complexity 1 22 0 2196 90 3 20 chr12 9275481 9275781 -134510674 + AluSq SINE Alu 1 295 -18 586 317 113 6 chr12 9275907 9276226 -134510229 + L1MEc LINE L1 22 374 -6022 1805 170 36 22 chr12 9276476 9276790 -134509665 + L1MB2 LINE L1 5767 6088 -83 1540 218 48 61 chr12 9276790 9277185 -134509270 - MLT1B LTR MaLR 0 390 1 1805 170 36 22 chr12 9277185 9277228 -134509227 + L1MB2 LINE L1 6088 6129 -42 2730 111 67 7 chr12 9277249 9277653 -134508802 - MSTA LTR MaLR 0 428 1 1298 163 125 29 chr12 9277664 9277977 -134508478 + L1MD3 LINE L1 6774 7116 -879 345 267 11 0 chr12 9277977 9278067 -134508388 + MLT1F1 LTR MaLR 35 125 -442 821 183 17 39 chr12 9278069 9278249 -134508206 + L1MD3 LINE L1 7404 7579 -416 1289 147 69 17 chr12 9278250 9278482 -134507973 + MER21A LTR ERV1 2 245 -686 3056 181 29 26 chr12 9278527 9279074 -134507381 + MER21A LTR ERV1 377 925 -6 1759 199 68 10 chr12 9279082 9279479 -134506976 + L1MD3 LINE L1 7576 7995 0 434 277 40 40 chr12 9279469 9279797 -134506658 + L1MEc LINE L1 696 1023 -5182 * 939 122 8 0 chr12 9279810 9279941 -134506514 + AluSq/x SINE Alu 1 132 -181 1458 121 0 5 chr12 9279945 9280144 -134506311 + AluSg/x SINE Alu 85 282 -28 1312 296 36 34 chr12 9280162 9280662 -134505793 + L1MEc LINE L1 1071 1574 -4822 2330 105 0 0 chr12 9280662 9280967 -134505488 + AluSq SINE Alu 1 305 -8 1312 296 36 34 chr12 9280967 9281250 -134505205 + L1MEc LINE L1 1574 1855 -4541 * 1789 234 80 81 chr12 9281244 9281417 -134505038 + L1MEc LINE L1 2168 2340 -3875 2316 113 0 0 chr12 9281417 9281718 -134504737 + AluSq SINE Alu 1 301 -12 1789 234 80 81 chr12 9281718 9281839 -134504616 + L1MEc LINE L1 2340 2460 -3755 1787 215 83 59 chr12 9281839 9282332 -134504123 - MLT1D LTR MaLR 0 505 1 1789 234 80 81 chr12 9282332 9283200 -134503255 + L1MEc LINE L1 2460 3328 -2887 658 310 43 47 chr12 9283206 9283662 -134502793 + L1M2a LINE L1 12 1246 -5852 2567 201 42 29 chr12 9283844 9284144 -134502311 + L1M2a LINE L1 1939 2234 -4934 2117 108 3 56 chr12 9284144 9284468 -134501987 + AluSq SINE Alu 1 307 -6 2567 201 42 29 chr12 9284468 9285043 -134501412 + L1M2a LINE L1 2234 2841 -4327 2058 137 3 10 chr12 9285045 9285344 -134501111 + AluSx SINE Alu 1 297 -15 1848 163 0 0 chr12 9285348 9285625 -134500830 + AluSx SINE Alu 1 277 -35 734 51 17 25 chr12 9285627 9285745 -134500710 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 594 180 78 0 chr12 9285757 9285885 -134500570 + L1M2a LINE L1 2704 2841 -4327 602 219 106 8 chr12 9285888 9286011 -134500444 + AluJo SINE Alu 2 136 -176 638 231 57 45 chr12 9286032 9286279 -134500176 + L1M4c LINE L1 2905 3154 -4411 1204 127 0 0 chr12 9286327 9286493 -134499962 + AluSg/x SINE Alu 124 289 -23 12530 203 31 36 chr12 9286640 9286849 -134499606 + L1M4c LINE L1 3415 3624 -3941 2255 82 0 36 chr12 9286849 9287155 -134499300 + AluY SINE Alu 1 295 -16 12530 203 31 36 chr12 9287155 9287316 -134499139 + L1M4c LINE L1 3624 3784 -3781 2040 126 0 17 chr12 9287316 9287610 -134498845 + AluSq SINE Alu 5 293 -20 12530 203 31 36 chr12 9287610 9288501 -134497954 + L1M4c LINE L1 3784 4678 -2887 1832 168 13 7 chr12 9288501 9288811 -134497644 + AluJb SINE Alu 1 312 0 12530 203 31 36 chr12 9288811 9289163 -134497292 + L1M4c LINE L1 4678 5030 -2535 2126 115 0 14 chr12 9289163 9289476 -134496979 + AluSx SINE Alu 1 309 0 12530 203 31 36 chr12 9289476 9289896 -134496559 + L1M4c LINE L1 5030 5451 -2114 2477 46 0 0 chr12 9289896 9290217 -134496238 + AluY SINE Alu 1 321 0 12530 203 31 36 chr12 9290217 9290723 -134495732 + L1M4c LINE L1 5451 5958 -1607 1227 135 89 163 chr12 9290723 9291116 -134495339 - MLT1A1 LTR MaLR 0 365 2 12530 203 31 36 chr12 9291116 9291174 -134495281 + L1M4c LINE L1 5958 6015 -1550 2301 94 0 55 chr12 9291174 9291504 -134494951 - AluSx SINE Alu 0 312 1 12530 203 31 36 chr12 9291504 9291904 -134494551 + L1M4c LINE L1 6015 6415 -1150 2470 57 0 7 chr12 9291904 9292200 -134494255 + AluY SINE Alu 1 294 -17 12530 203 31 36 chr12 9292200 9292483 -134493972 + L1M4c LINE L1 6415 6698 -867 554 159 11 0 chr12 9292493 9292581 -134493874 - FLAM_A SINE Alu -14 128 40 2074 77 37 53 chr12 9292582 9292881 -134493574 + AluSx SINE Alu 11 304 -8 2043 247 87 27 chr12 9292891 9293778 -134492677 + L1M4 LINE L1 3260 4199 -1947 1163 251 125 25 chr12 9293825 9293991 -134492464 - L1MEc LINE L1 -2594 3621 3473 1033 241 32 0 chr12 9293991 9294207 -134492248 - MER58A DNA MER1_type 0 224 2 1163 251 125 25 chr12 9294207 9294218 -134492237 - L1MEc LINE L1 -2742 3473 3465 1865 157 0 7 chr12 9294218 9294531 -134491924 - AluJb SINE Alu 0 311 1 1163 251 125 25 chr12 9294531 9294830 -134491625 - L1MEc LINE L1 -2750 3465 3095 2418 218 104 57 chr12 9295387 9296623 -134489832 - L1MEc LINE L1 -3129 3086 1861 1608 153 20 43 chr12 9296623 9296923 -134489532 - AluJo SINE Alu -19 293 1 2418 218 104 57 chr12 9296923 9296996 -134489459 - L1MEc LINE L1 -4354 1861 1793 189 0 0 0 chr12 9296996 9297017 -134489438 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 13759 26 5 0 chr12 9297037 9299379 -134487076 - L1PA4 LINE L1 -23 6132 3782 * 13940 32 0 1 chr12 9299355 9301013 -134485442 + L1P LINE L1 2180 3836 -2310 1854 260 72 63 chr12 9301010 9301615 -134484840 - L1MEc LINE L1 -4602 1794 1196 * 2099 136 0 13 chr12 9301615 9301931 -134484524 - AluJb SINE Alu 0 312 1 1854 260 72 63 chr12 9301931 9302277 -134484178 - L1MEc LINE L1 -5200 1196 855 1663 195 0 0 chr12 9302277 9302559 -134483896 - AluJo SINE Alu -30 282 1 1854 260 72 63 chr12 9302559 9302646 -134483809 - L1MEc LINE L1 -5541 855 770 2023 115 11 28 chr12 9302646 9302933 -134483522 + AluSq SINE Alu 2 283 -30 207 0 0 0 chr12 9302936 9302959 -134483496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1854 260 72 63 chr12 9302959 9303026 -134483429 - L1MEc LINE L1 -5627 769 673 1131 282 4 0 chr12 9303026 9303274 -134483181 - LTR40a LTR ERVL 0 519 271 365 247 62 0 chr12 9303274 9303371 -134483084 + MIR SINE MIR 90 192 -70 1166 244 8 18 chr12 9303482 9303763 -134482692 - LTR40a LTR ERVL -232 262 17 568 274 24 12 chr12 9303807 9303971 -134482484 - L1MEc LINE L1 -5756 640 475 1331 279 10 25 chr12 9303974 9304379 -134482076 - L1MEc LINE L1 -5963 433 35 779 259 68 3 chr12 9304398 9304692 -134481763 + L1ME2 LINE L1 4210 4522 -1624 1141 239 139 109 chr12 9304692 9305398 -134481057 - LTR8A LTR ERV1 0 727 1 1519 216 65 34 chr12 9305398 9305491 -134480964 + L1ME2 LINE L1 4519 4608 -1538 1940 148 7 7 chr12 9305491 9305788 -134480667 - AluJb SINE Alu -15 297 1 1519 216 65 34 chr12 9305788 9306167 -134480288 + L1ME2 LINE L1 4608 5006 -1140 813 183 8 0 chr12 9306167 9306298 -134480157 + AluJo SINE Alu 3 134 -178 246 224 109 61 chr12 9306353 9306399 -134480056 + L1ME2 LINE L1 5738 5780 -382 3905 165 43 63 chr12 9306399 9307144 -134479311 + MER44D DNA MER2_type 4 605 0 246 224 109 61 chr12 9307144 9307262 -134479193 + L1ME2 LINE L1 5780 5910 -252 1324 231 169 105 chr12 9307262 9307616 -134478839 - MER52A LTR ERV1 0 1755 1425 2055 138 0 7 chr12 9307616 9307920 -134478535 + AluSx SINE Alu 1 302 -10 1324 231 169 105 chr12 9307920 9308586 -134477869 - MER52A LTR ERV1 -330 1425 669 710 198 29 122 chr12 9308604 9308671 -134477784 + L1ME2 LINE L1 5916 5988 -176 1712 191 16 7 chr12 9308671 9308980 -134477475 + AluJb SINE Alu 1 312 0 710 198 29 122 chr12 9308980 9309150 -134477305 + L1ME2 LINE L1 5988 6131 -33 2304 94 7 0 chr12 9309150 9309447 -134477008 + AluSg SINE Alu 1 299 -11 803 251 54 4 chr12 9309496 9309815 -134476640 + L1MC4a LINE L1 6358 6784 -1024 1878 183 81 15 chr12 9309820 9310230 -134476225 - L1MA9 LINE L1 -33 6279 5843 529 216 9 0 chr12 9310235 9310346 -134476109 + L1MC4 LINE L1 6863 6974 -1068 376 280 60 24 chr12 9310510 9310678 -134475777 + LTR41 LTR ERVL 599 772 -1 493 178 14 82 chr12 9310685 9310745 -134475710 + L1MC4 LINE L1 7447 7510 -532 2742 185 58 45 chr12 9310745 9311371 -134475084 + LTR27 LTR ERV1 3 636 0 493 178 14 82 chr12 9311371 9311456 -134474999 + L1MC4 LINE L1 7510 7582 -460 597 237 139 40 chr12 9311459 9311808 -134474647 + L1MC4 LINE L1 7631 8042 0 1277 150 0 0 chr12 9311871 9312058 -134474397 + AluJb SINE Alu 1 187 -125 268 200 30 110 chr12 9312638 9312738 -134473717 + L2 LINE L2 3214 3305 -8 1743 154 15 0 chr12 9312889 9313161 -134473294 - AluJo SINE Alu -25 287 12 26 0 0 0 chr12 9313305 9313331 -134473124 + AT_rich Low_complexity Low_complexity 1 26 0 787 226 85 9 chr12 9313419 9313631 -134472824 + MIR SINE MIR 2 229 -33 325 260 52 58 chr12 9315933 9316087 -134470368 + MIR SINE MIR 71 223 -39 518 205 34 26 chr12 9316650 9316767 -134469688 + MIR SINE MIR 113 230 -32 2185 102 3 3 chr12 9319191 9319484 -134466971 - AluSc SINE Alu -16 293 1 241 291 155 0 chr12 9319836 9319939 -134466516 + MIR SINE MIR 30 148 -60 2177 104 7 0 chr12 9321124 9321411 -134465044 + AluSq SINE Alu 14 302 -11 483 192 77 0 chr12 9321994 9322098 -134464357 + MER81 DNA DNA 3 114 0 23 33 0 0 chr12 9324085 9324115 -134462340 + AT_rich Low_complexity Low_complexity 1 30 0 1820 178 0 3 chr12 9325237 9325541 -134460914 + AluJb SINE Alu 1 303 -9 916 132 0 29 chr12 9325781 9325917 -134460538 + FLAM_C SINE Alu 1 132 -1 1838 167 7 3 chr12 9327976 9328264 -134458191 - AluJb SINE Alu -23 289 1 2432 61 0 10 chr12 9328299 9328594 -134457861 + AluSp SINE Alu 1 292 -21 2183 113 0 3 chr12 9328728 9329019 -134457436 - AluSx SINE Alu -22 290 1 243 229 0 0 chr12 9329531 9329579 -134456876 + MIR SINE MIR 24 71 -137 342 98 0 0 chr12 9331583 9331634 -134454821 + (CTG)n Simple_repeat Simple_repeat 3 53 0 223 364 68 0 chr12 9332138 9332256 -134454199 + L2 LINE L2 3142 3267 -5 2008 123 4 0 chr12 9332667 9332944 -134453511 - AluSx SINE Alu -34 278 1 199 248 158 20 chr12 9333047 9333148 -134453307 + L2 LINE L2 3195 3309 -4 183 220 0 0 chr12 9333337 9333387 -134453068 + A-rich Low_complexity Low_complexity 1 50 0 308 306 159 70 chr12 9334204 9334531 -134451924 - L2 LINE L2 0 3272 2917 1772 156 38 7 chr12 9334543 9334831 -134451624 + AluJb SINE Alu 1 297 -15 31 82 0 0 chr12 9334834 9334907 -134451548 + AT_rich Low_complexity Low_complexity 1 73 0 309 282 29 29 chr12 9335022 9335125 -134451330 + L2 LINE L2 3194 3296 -17 892 290 74 14 chr12 9335211 9335576 -134450879 + L1ME3A LINE L1 5528 5914 -256 472 210 132 30 chr12 9335600 9335767 -134450688 + L1MC5 LINE L1 7742 7925 -36 1787 133 22 7 chr12 9336156 9336509 -134449946 + AluSx SINE Alu 1 357 0 446 291 149 73 chr12 9336617 9337436 -134449019 + L2 LINE L2 1243 1998 -1274 2263 87 3 17 chr12 9337436 9337734 -134448721 - AluSq SINE Alu -19 294 1 2081 119 3 14 chr12 9337734 9338028 -134448427 - AluSx SINE Alu -21 291 1 446 291 149 73 chr12 9338028 9339015 -134447440 + L2 LINE L2 1997 3192 -80 619 244 115 10 chr12 9339065 9339274 -134447181 - MIR SINE MIR -19 243 13 2231 118 3 0 chr12 9339872 9340168 -134446287 - AluSx SINE Alu -15 297 1 1010 237 76 58 chr12 9340246 9340511 -134445944 + MER2 DNA MER2_type 1 275 -70 2542 62 0 7 chr12 9340511 9340816 -134445639 - AluY SINE Alu -8 303 1 1010 237 76 58 chr12 9340816 9340879 -134445576 + MER2 DNA MER2_type 275 335 -10 236 280 21 11 chr12 9341735 9341828 -134444627 + GA-rich Low_complexity Low_complexity 2 95 0 2359 90 0 0 chr12 9342249 9342539 -134443916 + AluSx SINE Alu 1 290 -22 2241 107 0 0 chr12 9343647 9343937 -134442518 - AluSx SINE Alu -22 290 1 1005 181 101 8 chr12 9343988 9344286 -134442169 - MER33 DNA MER1_type 0 324 1 1338 166 21 33 chr12 9344761 9345002 -134441453 - AluJo SINE Alu -22 290 53 2294 89 0 3 chr12 9345002 9345293 -134441162 + AluSq SINE Alu 1 290 -23 260 283 0 0 chr12 9345355 9345415 -134441040 + Tigger3(Golem) DNA MER2_type 1 60 -2969 783 252 0 0 chr12 9345416 9345567 -134440888 + Tigger3(Golem) DNA MER2_type 2879 3029 0 896 178 59 0 chr12 9345716 9345885 -134440570 + AluJo SINE Alu 122 300 -12 249 243 14 14 chr12 9346421 9346495 -134439960 - MIR3 SINE MIR -15 193 120 248 324 49 10 chr12 9347364 9347466 -134438989 - MIR SINE MIR -93 169 64 180 259 136 12 chr12 9347498 9347579 -134438876 + MIR SINE MIR 56 146 -62 37 86 0 0 chr12 9349670 9349763 -134436692 + GC_rich Low_complexity Low_complexity 1 93 0 222 254 0 0 chr12 9349895 9349950 -134436505 + C-rich Low_complexity Low_complexity 1 55 0 200 308 0 0 chr12 9350027 9350079 -134436376 + CT-rich Low_complexity Low_complexity 1 52 0 229 240 13 53 chr12 9350317 9350392 -134436063 + GA-rich Low_complexity Low_complexity 1 72 0 329 224 47 47 chr12 9350725 9350832 -134435623 - L2 LINE L2 -7 3306 3200 202 306 153 8 chr12 9353212 9353336 -134433119 + MIR SINE MIR 94 235 -27 466 297 70 16 chr12 9353724 9353909 -134432546 - MIR SINE MIR -54 208 14 1504 193 57 71 chr12 9354171 9354591 -134431864 + MLT1D LTR MaLR 1 414 -91 1241 128 0 60 chr12 9354618 9354836 -134431619 - AluSg/x SINE Alu -3 307 103 1121 66 0 0 chr12 9354839 9354976 -134431479 - AluSg/x SINE Alu -3 307 171 401 176 0 0 chr12 9354976 9355044 -134431411 - AluS SINE Alu -243 69 2 2360 82 3 7 chr12 9355059 9355365 -134431090 - AluSp SINE Alu 0 313 9 530 129 0 138 chr12 9355372 9355488 -134430967 + MLT1D LTR MaLR 527 626 0 300 182 61 0 chr12 9355496 9355562 -134430893 - MER34 LTR ERV1 0 542 473 284 152 242 30 chr12 9355569 9355635 -134430820 + AluSg/x SINE Alu 159 238 -62 2155 111 17 0 chr12 9355649 9355946 -134430509 + AluSx SINE Alu 1 302 -10 2177 99 3 0 chr12 9355948 9356231 -134430224 + AluSg SINE Alu 1 284 -26 338 169 34 34 chr12 9356254 9356343 -134430112 - MER34 LTR ERV1 -74 468 380 1721 131 17 0 chr12 9356343 9356580 -134429875 + AluSx SINE Alu 1 241 -71 2024 114 135 3 chr12 9356580 9356913 -134429542 + MER51B LTR ERV1 1 377 0 4226 145 34 24 chr12 9356913 9357699 -134428756 + MER51B-int LTR ERV1 1 891 -6925 2101 136 0 7 chr12 9357699 9358000 -134428455 + AluSx SINE Alu 1 299 -13 4226 145 34 24 chr12 9358000 9358575 -134427880 + MER51B-int LTR ERV1 891 1459 -6357 365 133 33 0 chr12 9358587 9358647 -134427808 + AluSx SINE Alu 238 299 -3 754 81 0 118 chr12 9358658 9358794 -134427661 + AluSp/q SINE Alu 194 313 0 988 152 46 78 chr12 9358817 9358903 -134427552 - MER2 DNA MER2_type -135 210 123 1829 162 27 0 chr12 9358903 9359200 -134427255 + AluSx SINE Alu 1 305 -7 988 152 46 78 chr12 9359200 9359330 -134427125 - MER2 DNA MER2_type -222 123 1 1187 216 36 73 chr12 9359343 9359700 -134426755 - MER34 LTR ERV1 -198 344 1 1102 195 35 23 chr12 9359880 9360137 -134426318 - LTR37B LTR ERV1 0 468 209 461 246 66 0 chr12 9360428 9360550 -134425905 + L2 LINE L2 2375 2504 -810 762 300 119 50 chr12 9360551 9360962 -134425493 - L2 LINE L2 0 3313 2932 2584 81 5 48 chr12 9360962 9361031 -134425424 + THE1A LTR MaLR 1 71 -284 2009 98 33 65 chr12 9361031 9361337 -134425118 + AluSq SINE Alu 1 296 -17 2584 81 5 48 chr12 9361337 9361638 -134424817 + THE1A LTR MaLR 71 355 0 11685 84 16 24 chr12 9361638 9361848 -134424607 + THE1A-int LTR MaLR 1 211 -1369 2446 82 7 0 chr12 9361848 9362153 -134424302 + AluSp SINE Alu 1 307 -6 11685 84 16 24 chr12 9362153 9362794 -134423661 + THE1A-int LTR MaLR 211 856 -724 2401 94 0 0 chr12 9362794 9363093 -134423362 + AluSg SINE Alu 1 299 -11 11685 84 16 24 chr12 9363093 9363738 -134422717 + THE1A-int LTR MaLR 856 1487 -93 2499 64 3 0 chr12 9363738 9364035 -134422420 + AluSp SINE Alu 1 298 -15 11685 84 16 24 chr12 9364035 9364129 -134422326 + THE1A-int LTR MaLR 1487 1580 0 2609 92 3 8 chr12 9364129 9364486 -134421969 + THE1A LTR MaLR 1 355 0 762 300 119 50 chr12 9364486 9364535 -134421920 - L2 LINE L2 -380 2933 2819 2609 160 88 25 chr12 9364608 9365224 -134421231 + MER39 LTR ERV1 1 707 0 1092 227 133 0 chr12 9365224 9365524 -134420931 - L2 LINE L2 -538 2776 2437 2204 105 3 7 chr12 9365570 9365865 -134420590 - AluSc SINE Alu -14 295 2 1865 125 3 28 chr12 9365865 9366154 -134420301 - AluSx SINE Alu -30 282 1 1804 119 54 11 chr12 9366241 9366518 -134419937 - AluJb SINE Alu -15 297 9 621 124 0 0 chr12 9366523 9366612 -134419843 + LTR8 LTR ERV1 58 146 -545 805 196 89 124 chr12 9366719 9367178 -134419277 + MER34B LTR ERV1 12 440 -102 615 122 112 0 chr12 9367185 9367283 -134419172 + AluSq/x SINE Alu 2 110 -203 271 323 92 5 chr12 9367794 9367807 -134418648 + L1ME3A LINE L1 5002 5012 -1134 1969 137 0 14 chr12 9367807 9368092 -134418363 + AluSx SINE Alu 1 281 -31 271 323 92 5 chr12 9368092 9368273 -134418182 + L1ME3A LINE L1 5012 5213 -933 * 842 205 0 0 chr12 9368270 9368436 -134418019 + L1M3 LINE L1 5417 5582 -598 769 239 226 56 chr12 9368449 9368534 -134417921 + L1ME3A LINE L1 5201 5270 -900 2246 117 16 0 chr12 9368534 9368841 -134417614 + AluSx SINE Alu 1 312 0 769 239 226 56 chr12 9368841 9369410 -134417045 + L1ME3A LINE L1 5270 5962 -208 23 0 0 0 chr12 9369935 9369958 -134416497 + AT_rich Low_complexity Low_complexity 1 23 0 268 136 0 0 chr12 9369989 9370033 -134416422 - Charlie2 DNA MER1_type -61 2801 2758 2137 82 7 34 chr12 9370033 9370346 -134416109 + AluSq SINE Alu 1 305 0 32 0 0 0 chr12 9370347 9370379 -134416076 + AT_rich Low_complexity Low_complexity 1 32 0 260 283 22 22 chr12 9370394 9370486 -134415969 + MIR3 SINE MIR 112 203 -5 2404 55 41 0 chr12 9370718 9371010 -134415445 + AluY SINE Alu 1 304 -7 202 346 81 58 chr12 9371099 9371359 -134415096 + L2 LINE L2 2938 3203 -69 2282 108 0 7 chr12 9371775 9372082 -134414373 + AluSx SINE Alu 1 305 -7 863 194 123 144 chr12 9372154 9372281 -134414174 + MER110A LTR ERV1 1 129 -360 1501 100 63 48 chr12 9372281 9372411 -134414044 + L1MA2 LINE L1 6025 6152 -152 2125 120 0 3 chr12 9372411 9372703 -134413752 - AluSx SINE Alu -21 291 1 1501 100 63 48 chr12 9372703 9372841 -134413614 + L1MA2 LINE L1 6152 6297 -7 863 194 123 144 chr12 9372841 9372857 -134413598 + MER110A LTR ERV1 129 144 -345 1438 85 0 5 chr12 9372857 9373057 -134413398 - L1PB1 LINE L1 -2 6149 5951 863 194 123 144 chr12 9373057 9373432 -134413023 + MER110A LTR ERV1 144 484 -5 602 206 7 29 chr12 9373814 9373950 -134412505 + AluJb SINE Alu 2 134 -178 2235 112 20 3 chr12 9373975 9374279 -134412176 - AluSx SINE Alu -1 311 3 599 174 60 7 chr12 9374280 9374429 -134412026 - L1MA10 LINE L1 -4 6330 6174 632 253 69 0 chr12 9374459 9374633 -134411822 - MIR SINE MIR -45 217 32 333 246 254 31 chr12 9374645 9374869 -134411586 + Charlie2 DNA MER1_type 1 292 -2490 219 69 0 0 chr12 9374869 9374898 -134411557 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 246 254 31 chr12 9374898 9374933 -134411522 + Charlie2 DNA MER1_type 292 318 -2464 1505 199 87 84 chr12 9374964 9375244 -134411211 + Charlie2 DNA MER1_type 1890 2168 -694 2179 103 34 0 chr12 9375244 9375535 -134410920 + AluSx SINE Alu 1 301 -11 1505 199 87 84 chr12 9375535 9375663 -134410792 + Charlie2 DNA MER1_type 2168 2294 -568 2190 119 3 0 chr12 9375663 9375956 -134410499 + AluSx SINE Alu 1 294 -18 1505 199 87 84 chr12 9375956 9376190 -134410265 + Charlie2 DNA MER1_type 2294 2535 -327 1971 148 14 0 chr12 9376194 9376485 -134409970 + AluJb SINE Alu 1 295 -17 31 0 0 0 chr12 9376522 9376553 -134409902 + AT_rich Low_complexity Low_complexity 1 31 0 650 227 90 64 chr12 9376667 9377074 -134409381 - LTR30 LTR ERV1 0 595 127 744 134 97 143 chr12 9377139 9377181 -134409274 + MLT1B LTR MaLR 1 43 -347 228 31 31 0 chr12 9377181 9377213 -134409242 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 1517 132 45 66 chr12 9377213 9377501 -134408954 - AluJo SINE Alu -30 282 1 744 134 97 143 chr12 9377501 9377674 -134408781 + MLT1B LTR MaLR 41 207 -183 1525 271 117 22 chr12 9377804 9378317 -134408138 + L1M4 LINE L1 4198 4661 -1485 315 0 0 0 chr12 9378317 9378352 -134408103 + (TG)n Simple_repeat Simple_repeat 1 35 0 1525 271 117 22 chr12 9378352 9378599 -134407856 + L1M4 LINE L1 4661 5044 -1102 1807 146 0 47 chr12 9378599 9378921 -134407534 + AluJb SINE Alu 1 307 -5 1525 271 117 22 chr12 9378921 9378977 -134407478 + L1M4 LINE L1 5044 5093 -1053 510 184 0 0 chr12 9379010 9379097 -134407358 - AluJ/FLAM SINE Alu -223 89 3 424 252 10 0 chr12 9379120 9379223 -134407232 + L1M4 LINE L1 5128 5231 -915 378 194 121 39 chr12 9379280 9379307 -134407148 + L1M4 LINE L1 5259 5282 -889 3991 84 0 18 chr12 9379307 9379593 -134406862 + L1PA14 LINE L1 5623 5896 -265 1539 112 0 66 chr12 9379593 9379835 -134406620 + AluSg/x SINE Alu 82 307 -3 3991 84 0 18 chr12 9379835 9380096 -134406359 + L1PA14 LINE L1 5896 6160 -1 378 194 121 39 chr12 9380096 9380277 -134406178 + L1M4 LINE L1 5282 5485 -686 2251 114 0 7 chr12 9380277 9380584 -134405871 + AluSx SINE Alu 1 305 -7 2388 103 3 0 chr12 9380586 9380896 -134405559 + AluSq SINE Alu 1 311 -2 355 259 39 18 chr12 9380916 9381067 -134405388 - MLT1J1 LTR MaLR -305 141 24 181 324 84 67 chr12 9381096 9381334 -134405121 - L2 LINE L2 -89 3183 2942 207 233 0 0 chr12 9381500 9381543 -134404912 - L2 LINE L2 -562 2752 2710 793 140 0 59 chr12 9381547 9381683 -134404772 - FLAM_C SINE Alu -5 128 1 2627 53 0 0 chr12 9382333 9382633 -134403822 - AluY SINE Alu -11 300 1 571 261 134 90 chr12 9382717 9383230 -134403225 + MER34 LTR ERV1 1 536 -6 455 201 29 148 chr12 9383311 9383520 -134402935 + MER92C LTR ERV1 1 184 -370 307 258 0 0 chr12 9383586 9383652 -134402803 + MER92C LTR ERV1 487 552 -2 336 364 0 0 chr12 9383733 9383854 -134402601 + L2 LINE L2 2594 2714 -600 1984 123 7 17 chr12 9383989 9384281 -134402174 - AluSx SINE Alu -23 289 1 344 323 32 26 chr12 9384321 9384476 -134401979 + L2 LINE L2 3147 3302 -11 2093 129 3 0 chr12 9384857 9385152 -134401303 - AluSx SINE Alu -15 297 2 1883 158 3 0 chr12 9385369 9385681 -134400774 - AluSx SINE Alu 0 313 1 5927 118 11 14 chr12 9385716 9386037 -134400418 - L1PA16 LINE L1 -22 6144 5824 198 0 0 0 chr12 9386037 9386059 -134400396 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2068 117 3 3 chr12 9386059 9386342 -134400113 - AluSq SINE Alu -30 283 1 5927 118 11 14 chr12 9386342 9387047 -134399408 - L1PA16 LINE L1 -340 5826 5119 2013 136 3 0 chr12 9387677 9387971 -134398484 - AluSx SINE Alu -17 295 1 2180 125 0 22 chr12 9388624 9388943 -134397512 + AluSx SINE Alu 1 312 0 1893 118 46 14 chr12 9388985 9389265 -134397190 + AluSx SINE Alu 1 289 -23 2363 78 0 7 chr12 9390048 9390343 -134396112 + AluSx SINE Alu 2 294 -18 21 0 0 0 chr12 9390343 9390364 -134396091 + AT_rich Low_complexity Low_complexity 1 21 0 701 232 39 89 chr12 9390594 9390930 -134395525 + L2 LINE L2 2991 3309 -4 901 162 0 0 chr12 9390984 9391120 -134395335 + AluSg/x SINE Alu 162 297 -15 596 213 32 58 chr12 9391190 9391345 -134395110 + Charlie1b DNA MER1_type 2 152 -371 1678 177 46 33 chr12 9391381 9391549 -134394906 + Charlie1b DNA MER1_type 130 294 -2467 2292 118 0 13 chr12 9391549 9391863 -134394592 - AluSg SINE Alu 0 310 1 1678 177 46 33 chr12 9391863 9392083 -134394372 + Charlie1b DNA MER1_type 294 523 0 2395 95 0 0 chr12 9392160 9392465 -134393990 - AluY SINE Alu -6 305 1 953 120 0 0 chr12 9392750 9392875 -134393580 + AluSq/x SINE Alu 1 125 -187 447 312 158 11 chr12 9392885 9393347 -134393108 + L1M4 LINE L1 2513 3042 -3104 210 339 43 9 chr12 9393553 9393668 -134392787 + MIR SINE MIR 34 152 -56 2523 73 0 0 chr12 9393796 9394098 -134392357 + AluY SINE Alu 1 302 -9 517 248 135 50 chr12 9394442 9394664 -134391791 - MIR SINE MIR -19 243 3 1280 205 13 20 chr12 9394677 9394975 -134391480 + MER33 DNA MER1_type 28 323 -1 348 236 0 0 chr12 9395435 9395524 -134390931 + (TA)n Simple_repeat Simple_repeat 1 89 0 204 179 0 0 chr12 9395584 9395623 -134390832 + (TA)n Simple_repeat Simple_repeat 2 40 0 381 75 0 0 chr12 9395887 9395940 -134390515 + (CA)n Simple_repeat Simple_repeat 2 54 0 2252 112 3 0 chr12 9396702 9396997 -134389458 - AluSp SINE Alu -17 296 1 28 0 0 0 chr12 9397879 9397907 -134388548 + AT_rich Low_complexity Low_complexity 1 28 0 2476 54 40 0 chr12 9398031 9398327 -134388128 - AluY SINE Alu -3 308 1 2300 71 3 3 chr12 9398791 9399105 -134387350 - AluSp SINE Alu 0 314 1 1805 127 0 115 chr12 9399139 9399479 -134386976 - AluSx SINE Alu 0 302 2 2434 102 0 0 chr12 9399827 9400132 -134386323 - AluSq SINE Alu -8 305 1 2351 70 7 17 chr12 9400958 9401258 -134385197 + AluSp SINE Alu 1 297 -16 2230 114 7 0 chr12 9401862 9402168 -134384287 + AluSx SINE Alu 1 308 -4 2089 116 0 0 chr12 9402303 9402580 -134383875 + AluSq SINE Alu 1 277 -36 2575 59 0 0 chr12 9402580 9402885 -134383570 + AluY SINE Alu 4 309 -2 373 293 6 110 chr12 9403927 9404020 -134382435 - MIR SINE MIR -23 185 119 1751 169 16 22 chr12 9404020 9404333 -134382122 + AluJb SINE Alu 1 311 -1 373 293 6 110 chr12 9404333 9404431 -134382024 - MIR SINE MIR -89 119 12 2005 133 27 10 chr12 9404496 9404797 -134381658 + AluSx SINE Alu 1 306 -6 702 138 110 0 chr12 9404847 9404956 -134381499 - AluSg1 SINE Alu -187 122 2 736 204 50 64 chr12 9405222 9405480 -134380975 + MIR SINE MIR 3 254 -8 1034 163 22 11 chr12 9405563 9405747 -134380708 - MER5A DNA MER1_type 0 189 4 2013 144 0 10 chr12 9405761 9406060 -134380395 - AluJb SINE Alu -14 298 3 288 231 138 23 chr12 9406074 9406204 -134380251 - MIR3 SINE MIR -63 145 1 1102 68 0 0 chr12 9407317 9407450 -134379005 + AluSp SINE Alu 1 133 -180 265 336 107 0 chr12 9407915 9408037 -134378418 - L2 LINE L2 -4 3268 3134 594 259 81 0 chr12 9408158 9408332 -134378123 - MIR SINE MIR -8 254 67 2401 101 0 0 chr12 9409171 9409477 -134376978 + AluSg SINE Alu 2 307 -3 184 229 104 0 chr12 9409895 9409943 -134376512 - MIR SINE MIR -6 256 204 360 210 12 0 chr12 9410351 9410432 -134376023 - MER5A DNA MER1_type -84 105 24 1580 249 46 60 chr12 9410487 9410988 -134375467 + MLT1F1 LTR MaLR 74 567 0 1614 168 28 28 chr12 9411076 9411367 -134375088 + AluJo SINE Alu 6 296 -16 2196 118 3 0 chr12 9411367 9411672 -134374783 + AluSx SINE Alu 1 306 -6 292 125 0 0 chr12 9411687 9411735 -134374720 + MIR SINE MIR 183 230 -32 320 208 39 0 chr12 9411782 9411859 -134374596 - MER94 DNA DNA -51 83 4 2027 142 3 0 chr12 9412661 9412949 -134373506 + AluJo SINE Alu 5 293 -19 693 197 0 0 chr12 9413077 9413199 -134373256 - AluJb SINE Alu -189 123 2 901 235 57 63 chr12 9413210 9413363 -134373092 - L1M4 LINE L1 -1159 4987 4835 2296 110 7 0 chr12 9413363 9413671 -134372784 - AluSx SINE Alu -2 310 1 901 235 57 63 chr12 9413671 9413866 -134372589 - L1M4 LINE L1 -1311 4835 4641 312 358 92 34 chr12 9414248 9414699 -134371756 - L2 LINE L2 -1211 2103 1680 2163 130 0 10 chr12 9414699 9414998 -134371457 + AluSx SINE Alu 1 296 -16 312 358 92 34 chr12 9414998 9415422 -134371033 - L2 LINE L2 -1634 1680 1177 408 325 35 66 chr12 9415716 9416033 -134370422 - L1MC/D LINE L1 -2211 5597 5291 879 204 0 0 chr12 9416213 9416365 -134370090 - AluJb SINE Alu -25 287 136 926 104 30 12 chr12 9416365 9416529 -134369926 - L1MA8 LINE L1 0 6291 6125 298 359 0 12 chr12 9417062 9417229 -134369226 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2295 105 7 3 chr12 9417488 9417794 -134368661 - AluSx SINE Alu -5 307 1 2336 79 0 3 chr12 9417794 9418086 -134368369 - AluSc SINE Alu -18 291 1 727 98 11 179 chr12 9418496 9418544 -134367911 - L1MA8 LINE L1 -152 6139 6085 2055 118 0 14 chr12 9418544 9418833 -134367622 - AluSq SINE Alu -1 312 28 727 98 11 179 chr12 9418833 9418968 -134367487 - L1MA8 LINE L1 -206 6085 5987 2132 111 17 0 chr12 9419110 9419398 -134367057 - AluSx SINE Alu -19 293 1 738 144 0 0 chr12 9419625 9419743 -134366712 - L1MB4 LINE L1 -1 6179 6062 2162 121 0 3 chr12 9419753 9420050 -134366405 - AluSg SINE Alu -14 296 1 3374 117 58 4 chr12 9420405 9420902 -134365553 - MER4E-int LTR ERV1 -6234 524 1 2217 93 7 0 chr12 9420902 9421192 -134365263 - MER4E LTR ERV1 0 766 475 716 164 114 7 chr12 9421195 9421335 -134365120 - MLT1C LTR MaLR -1 466 312 * 721 208 35 0 chr12 9421318 9421462 -134364993 - MLT2B2 LTR ERVL -366 149 1 2869 187 36 76 chr12 9421724 9422446 -134364009 + LTR8A LTR ERV1 35 727 0 1444 212 10 27 chr12 9422501 9422798 -134363657 + AluJo SINE Alu 3 294 -18 324 135 0 0 chr12 9423430 9423482 -134362973 - MLT2F LTR ERVL 0 663 612 3962 145 16 86 chr12 9423482 9423791 -134362664 + Tigger3b DNA MER2_type 1 330 -2698 2279 87 3 7 chr12 9423791 9424091 -134362364 - AluSq SINE Alu -14 299 1 3962 145 16 86 chr12 9424091 9424540 -134361915 + Tigger3b DNA MER2_type 330 809 -2219 3400 58 0 2 chr12 9424540 9424955 -134361500 + L1PA7 LINE L1 5729 6154 0 3682 121 14 2 chr12 9424955 9425505 -134360950 + L1PA15 LINE L1 5602 6162 -3 3962 145 16 86 chr12 9425505 9425570 -134360885 + Tigger3b DNA MER2_type 700 768 -463 2719 151 36 2 chr12 9426864 9427313 -134359142 + Tigger3b DNA MER2_type 765 1228 -4 1146 216 39 67 chr12 9427317 9427329 -134359126 - MLT2C1 LTR ERVL -51 346 335 1658 173 4 11 chr12 9427329 9427601 -134358854 + AluJo SINE Alu 9 278 -34 1146 216 39 67 chr12 9427601 9427944 -134358511 - MLT2C1 LTR ERVL -62 335 1 1214 84 11 47 chr12 9428087 9428277 -134358178 + AluSq SINE Alu 127 309 -4 236 211 123 13 chr12 9428591 9428708 -134357747 + L3b LINE CR1 1292 1470 -113 881 291 79 35 chr12 9429919 9430324 -134356131 - HsTC2a DNA Tc2 -242 502 80 2138 126 7 0 chr12 9430399 9430708 -134355747 + AluSx SINE Alu 2 312 0 520 260 120 73 chr12 9430785 9431253 -134355202 + MLT1H1 LTR MaLR 31 555 0 2243 106 3 10 chr12 9432421 9432722 -134353733 - AluSx SINE Alu -13 299 1 794 238 110 98 chr12 9432954 9433487 -134352968 + MLT1H1 LTR MaLR 11 555 0 336 171 14 0 chr12 9433498 9433568 -134352887 - HsTC2a DNA Tc2 -670 74 4 638 353 77 45 chr12 9433585 9433727 -134352728 + L1ME3A LINE L1 5326 5462 -708 2199 123 0 7 chr12 9433727 9434028 -134352427 + AluSx SINE Alu 1 299 -13 638 353 77 45 chr12 9434028 9434395 -134352060 + L1ME3A LINE L1 5462 5851 -319 717 170 23 23 chr12 9434414 9434600 -134351855 + L1MCa LINE L1 1 157 -5888 1586 189 102 5 chr12 9434619 9435052 -134351403 + L1MCa LINE L1 719 1193 -4852 * 3165 58 40 9 chr12 9435042 9435489 -134350966 + L1PA10 LINE L1 5654 6114 -54 3705 204 141 16 chr12 9435493 9436202 -134350253 + L1MCa LINE L1 1242 1861 -4703 1655 223 3 0 chr12 9436202 9436498 -134349957 - AluJo SINE Alu -15 297 1 3705 204 141 16 chr12 9436498 9437677 -134348778 + L1MCa LINE L1 1861 3369 -3195 2265 225 55 2 chr12 9437686 9438287 -134348168 + L1MCa LINE L1 4032 4664 -1900 189 0 0 0 chr12 9438995 9439016 -134347439 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4609 124 42 129 chr12 9439756 9440985 -134345470 + MER52C LTR ERV1 59 1180 -98 873 275 42 4 chr12 9441994 9442236 -134344219 + MIR SINE MIR 4 246 -16 3124 148 66 70 chr12 9442316 9442911 -134343544 + MER6 DNA MER2_type 1 594 -271 3976 121 24 0 chr12 9442911 9443499 -134342956 + LTR26 LTR ERV1 2 603 0 3124 148 66 70 chr12 9443499 9443657 -134342798 + MER6 DNA MER2_type 594 751 -114 35 0 0 0 chr12 9443662 9443697 -134342758 + AT_rich Low_complexity Low_complexity 1 35 0 968 172 29 25 chr12 9443785 9444023 -134342432 - L1MA4 LINE L1 -6 6294 6056 561 186 0 0 chr12 9444025 9444127 -134342328 + MER6 DNA MER2_type 763 864 -1 1343 188 8 0 chr12 9444130 9444364 -134342091 + MER46A DNA MER2_type 1 236 0 245 323 0 16 chr12 9444436 9444498 -134341957 - MIR SINE MIR -112 96 36 216 0 0 0 chr12 9445909 9445933 -134340522 + (TG)n Simple_repeat Simple_repeat 2 25 0 1280 169 4 34 chr12 9445961 9446197 -134340258 - AluJo SINE Alu -83 229 1 1845 140 3 3 chr12 9446574 9446867 -134339588 + L1PB4 LINE L1 5863 6155 -1 191 102 34 34 chr12 9447555 9447614 -134338841 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 257 270 29 29 chr12 9447766 9447903 -134338552 + (CATATA)n Simple_repeat Simple_repeat 3 139 0 23 54 0 0 chr12 9448996 9449033 -134337422 + AT_rich Low_complexity Low_complexity 1 37 0 1666 170 21 18 chr12 9449046 9449329 -134337126 - AluJb SINE Alu -28 284 1 2443 66 20 0 chr12 9449341 9449526 -134336929 - AluY SINE Alu -4 307 112 225 0 0 0 chr12 9449526 9449551 -134336904 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2443 66 20 0 chr12 9449551 9449666 -134336789 - AluY SINE Alu -199 112 1 211 242 30 45 chr12 9449761 9449827 -134336628 - MER5B DNA MER1_type -1 177 113 1186 128 6 11 chr12 9449827 9450007 -134336448 + AluSg/x SINE Alu 132 310 0 206 317 40 50 chr12 9450007 9450108 -134336347 - MER5A DNA MER1_type -52 137 38 772 189 109 144 chr12 9450456 9450769 -134335686 - AluJo SINE Alu 0 302 1 920 157 0 0 chr12 9450876 9451010 -134335445 + AluJo SINE Alu 1 134 -178 288 200 0 0 chr12 9451239 9451294 -134335161 + LTR29 LTR ERV1 1 55 -567 379 147 52 7 chr12 9451892 9452028 -134334427 + (TA)n Simple_repeat Simple_repeat 2 143 0 223 101 63 25 chr12 9452044 9452123 -134334332 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 640 165 0 0 chr12 9452417 9452514 -134333941 - AluJ/FLAM SINE Alu -215 97 1 243 429 34 0 chr12 9453071 9453218 -134333237 + L2 LINE L2 3116 3267 -5 447 235 220 0 chr12 9453499 9453631 -134332824 + MIR SINE MIR 17 177 -85 214 147 0 0 chr12 9454488 9454522 -134331933 + (C)n Simple_repeat Simple_repeat 1 34 0 4362 180 140 145 chr12 9454549 9456014 -134330441 + MER52A LTR ERV1 324 1753 -2 22 0 0 0 chr12 9456336 9456358 -134330097 + AT_rich Low_complexity Low_complexity 1 22 0 204 312 52 26 chr12 9459601 9459678 -134326777 + L2 LINE L2 3169 3247 -25 302 266 29 92 chr12 9460048 9460170 -134326285 - MER5A DNA MER1_type 0 189 80 2330 71 10 7 chr12 9460170 9460464 -134325991 - AluSp SINE Alu -18 295 1 302 266 29 92 chr12 9460464 9460514 -134325941 - MER5A DNA MER1_type -109 80 28 24 32 0 0 chr12 9460760 9460791 -134325664 + AT_rich Low_complexity Low_complexity 1 31 0 2020 155 0 3 chr12 9460797 9461132 -134325323 - L1PA13 LINE L1 -19 6144 5811 186 347 0 14 chr12 9461376 9461448 -134325007 + L3b LINE CR1 1296 1366 -217 2171 142 0 0 chr12 9463150 9463452 -134323003 + AluSx SINE Alu 1 302 -10 273 264 75 27 chr12 9464727 9464962 -134321493 + L1MC/D LINE L1 5665 5902 -268 868 231 36 10 chr12 9465575 9465770 -134320685 - MIR SINE MIR -2 260 61 307 148 0 19 chr12 9465806 9465860 -134320595 + Tigger5 DNA MER2_type 2 54 -2269 * 338 174 14 14 chr12 9465833 9465902 -134320553 + Tigger5 DNA MER2_type 2255 2323 0 4437 75 2 0 chr12 9467418 9467995 -134318460 - L1PA8A LINE L1 -9 6122 5545 264 193 148 11 chr12 9468486 9468574 -134317881 + MIR SINE MIR 150 249 -13 21 57 0 0 chr12 9469339 9469374 -134317081 + AT_rich Low_complexity Low_complexity 1 35 0 341 313 90 43 chr12 9470471 9470727 -134315728 + L1ME2 LINE L1 5286 5553 -2489 4703 262 32 37 chr12 9470787 9472201 -134314254 + L1M3b LINE L1 11 1418 -4863 1983 21 4 0 chr12 9472198 9472435 -134314020 - L1P2 LINE L1 -435 5720 5483 * 2599 35 0 0 chr12 9472435 9472745 -134313710 + L1PA5 LINE L1 5842 6152 -2 9997 215 50 32 chr12 9472783 9475605 -134310850 + L1MA7 LINE L1 2267 5172 -2393 474 239 128 0 chr12 9475605 9475714 -134310741 + FLAM_A SINE Alu 1 123 -10 9997 215 50 32 chr12 9475714 9476589 -134309866 + L1MA7 LINE L1 5172 6030 -1535 2156 184 70 15 chr12 9476592 9477119 -134309336 + L1MA7 LINE L1 7145 7700 -10 356 306 96 33 chr12 9477175 9477446 -134309009 + L1ME2 LINE L1 5605 5892 -272 444 297 22 6 chr12 9477682 9477864 -134308591 + HAL1b LINE L1 606 790 -558 2273 114 0 0 chr12 9478803 9479102 -134307353 + AluSx SINE Alu 1 299 -13 22 56 0 0 chr12 9479158 9479194 -134307261 + AT_rich Low_complexity Low_complexity 1 36 0 1378 234 48 47 chr12 9481368 9481995 -134304460 + L1M3de LINE L1 587 1184 -5469 3494 162 36 18 chr12 9482001 9482724 -134303731 + L1MA9 LINE L1 5538 6273 -39 180 306 0 0 chr12 9483057 9483106 -134303349 - L2 LINE L2 -209 3063 3015 427 150 88 71 chr12 9483123 9483276 -134303179 + FLAM_C SINE Alu 1 155 0 672 173 35 126 chr12 9483634 9483889 -134302566 + MER63 DNA MER1_type 5 236 -825 309 219 0 0 chr12 9483933 9483997 -134302458 - MER63 DNA MER1_type -534 526 463 250 174 0 0 chr12 9483969 9484015 -134302440 + MER63 DNA MER1_type 244 289 -772 * 22 0 0 0 chr12 9484289 9484311 -134302144 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 9484456 9484478 -134301977 + AT_rich Low_complexity Low_complexity 1 22 0 2916 6 0 0 chr12 9485087 9485403 -134301052 - AluYb8 SINE Alu -2 316 1 403 240 25 58 chr12 9486167 9486288 -134300167 + L2 LINE L2 3195 3311 -2 25 65 0 0 chr12 9486468 9486514 -134299941 + AT_rich Low_complexity Low_complexity 1 46 0 2220 110 10 0 chr12 9486974 9487275 -134299180 - AluSx SINE Alu -8 304 1 180 0 0 0 chr12 9487775 9487795 -134298660 + (TA)n Simple_repeat Simple_repeat 1 20 0 349 291 49 21 chr12 9488556 9488720 -134297735 + MIR SINE MIR 36 206 -2 249 33 0 0 chr12 9489772 9489802 -134296653 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 769 169 0 0 chr12 9489805 9489923 -134296532 - FLAM_C SINE Alu -15 118 1 1609 64 3 158 chr12 9490094 9490405 -134296050 + L1PB1 LINE L1 5885 6147 -4 1789 156 3 3 chr12 9491571 9491860 -134294595 - AluJb SINE Alu -23 289 1 200 236 55 18 chr12 9492126 9492181 -134294274 + L2 LINE L2 3215 3271 -1 471 254 16 8 chr12 9492559 9492685 -134293770 - MIR SINE MIR -48 214 88 3412 154 16 2 chr12 9492772 9493382 -134293073 - L1MB2 LINE L1 -21 6150 5532 655 281 45 23 chr12 9493803 9494024 -134292431 - L2 LINE L2 -4 3309 3084 1058 157 0 5 chr12 9496225 9496416 -134290039 - L1MA4A LINE L1 -14 6289 6100 208 77 51 0 chr12 9497297 9497336 -134289119 + A-rich Low_complexity Low_complexity 1 41 0 2310 71 0 3 chr12 9497444 9497770 -134288685 - AluY SINE Alu 0 325 1 826 83 15 8 chr12 9499752 9499885 -134286570 + L1MA2 LINE L1 6075 6208 -96 559 105 0 0 chr12 9499973 9500059 -134286396 + L1MA3 LINE L1 6220 6305 0 25 51 0 0 chr12 9500431 9500470 -134285985 + AT_rich Low_complexity Low_complexity 1 39 0 467 306 81 47 chr12 9500502 9500760 -134285695 - L2 LINE L2 -1 3312 3046 * 755 312 80 13 chr12 9500739 9501040 -134285415 - L2 LINE L2 -644 2670 2350 207 100 0 0 chr12 9503302 9503332 -134283123 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1368 226 73 90 chr12 9503632 9504658 -134281797 - Charlie2 DNA MER1_type -2 2860 1852 573 277 142 12 chr12 9504657 9504910 -134281545 - Charlie2 DNA MER1_type -2458 324 39 * 219 167 0 0 chr12 9506004 9506046 -134280409 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 261 374 41 0 chr12 9506052 9506199 -134280256 - L2 LINE L2 0 3313 3161 372 389 0 19 chr12 9506314 9506476 -134279979 - L2 LINE L2 -181 3091 2933 274 338 76 59 chr12 9506587 9507045 -134279410 - L2 LINE L2 -582 2732 2267 1056 173 54 29 chr12 9507048 9507326 -134279129 - MER33 DNA MER1_type 0 324 40 332 277 72 12 chr12 9507343 9507507 -134278948 - MER112 DNA MER1_type -7 253 80 944 303 76 17 chr12 9507507 9507983 -134278472 + MLT1J LTR MaLR 1 504 -7 289 340 88 26 chr12 9508160 9508466 -134277989 - L2 LINE L2 -1053 2261 1937 191 327 119 50 chr12 9508720 9509182 -134277273 - L2 LINE L2 -1337 1977 1484 287 248 32 61 chr12 9509273 9509404 -134277051 + MIR SINE MIR 39 176 -79 288 0 0 0 chr12 9510197 9510229 -134276226 + (TG)n Simple_repeat Simple_repeat 2 33 0 1718 188 0 17 chr12 9510230 9510528 -134275927 - AluJo SINE Alu -17 295 3 2072 101 0 0 chr12 9510637 9510914 -134275541 + AluSc SINE Alu 33 309 0 592 212 117 9 chr12 9512018 9512249 -134274206 - Charlie2a DNA MER1_type -1393 1469 1214 24 91 0 0 chr12 9512369 9512435 -134274020 + AT_rich Low_complexity Low_complexity 1 66 0 2800 155 60 6 chr12 9512510 9513026 -134273429 - MER44D DNA MER2_type -1 604 6 442 203 14 34 chr12 9513201 9513306 -134273149 + L1MC5 LINE L1 6774 6880 -1162 1766 71 8 0 chr12 9513306 9513544 -134272911 - MER75B DNA T2_type 0 243 4 442 203 14 34 chr12 9513544 9513579 -134272876 + L1MC5 LINE L1 6880 6987 -1055 4858 131 125 62 chr12 9513583 9514775 -134271680 + MER52C LTR ERV1 1 1267 -11 271 197 79 0 chr12 9514889 9514965 -134271490 - L1MA8 LINE L1 -5 6286 6205 2224 102 0 0 chr12 9515071 9515377 -134271078 - AluSg SINE Alu 0 306 1 188 88 59 0 chr12 9518390 9518424 -134268031 + CT-rich Low_complexity Low_complexity 3 38 0 22 0 0 0 chr12 9518564 9518586 -134267869 + AT_rich Low_complexity Low_complexity 1 22 0 1957 64 98 4 chr12 9518924 9519190 -134267265 - AluY SINE Alu -18 293 3 4134 193 37 15 chr12 9519192 9520633 -134265822 - L1MB2 LINE L1 -47 6124 4645 21 0 0 0 chr12 9520686 9520707 -134265748 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 9520756 9520792 -134265663 + AT_rich Low_complexity Low_complexity 1 36 0 460 217 83 50 chr12 9520919 9521039 -134265416 + L2 LINE L2 3189 3312 -1 207 208 21 10 chr12 9521050 9521146 -134265309 + (TA)n Simple_repeat Simple_repeat 2 98 0 343 305 86 94 chr12 9521299 9521660 -134264795 + MLT1L LTR MaLR 154 521 0 323 348 136 24 chr12 9521760 9522047 -134264408 - L2 LINE L2 -462 2852 2534 279 253 101 0 chr12 9522214 9522293 -134264162 - MER104 DNA Tc2 -88 92 6 293 311 90 0 chr12 9522306 9522428 -134264027 - MIR SINE MIR -6 256 124 268 290 21 21 chr12 9522492 9522585 -134263870 - L2 LINE L2 -965 2349 2257 555 335 133 31 chr12 9522693 9523144 -134263311 - L2 LINE L2 0 3313 2817 321 379 109 11 chr12 9523123 9523408 -134263047 - L2 LINE L2 -1047 2267 1955 * 1858 158 32 6 chr12 9523753 9524101 -134262354 - L1MB1 LINE L1 -1 6403 6047 275 203 14 0 chr12 9525873 9525947 -134260508 + (TA)n Simple_repeat Simple_repeat 2 76 0 10901 208 41 9 chr12 9525954 9529094 -134257361 - L1MB1 LINE L1 -594 5810 2561 3071 65 29 2 chr12 9529096 9529511 -134256944 - LTR19A LTR ERV1 0 486 61 2489 88 0 0 chr12 9529511 9529840 -134256615 - LTR19A-int LTR ERV1 -132 5454 5126 * 3877 80 4 0 chr12 9529835 9530349 -134256106 - LTR19A-int LTR ERV1 -1205 4381 3866 23462 75 40 38 chr12 9530377 9533862 -134252593 - LTR19A-int LTR ERV1 -2091 3495 1 3605 63 25 0 chr12 9533862 9534336 -134252119 - LTR19A LTR ERV1 0 486 1 2895 255 90 9 chr12 9534336 9536047 -134250408 - L1MB1 LINE L1 -3819 2563 794 461 287 60 27 chr12 9536039 9536189 -134250266 - L1MB1 LINE L1 -5380 923 769 * 600 268 38 6 chr12 9537274 9537431 -134249024 - MIR SINE MIR -48 214 53 1473 321 43 22 chr12 9537809 9538301 -134248154 - MLT2E LTR ERVL -28 600 99 239 349 12 0 chr12 9538803 9538889 -134247566 - MIR SINE MIR -12 250 164 482 296 16 53 chr12 9538948 9539137 -134247318 - MER5A DNA MER1_type 0 189 8 363 348 75 40 chr12 9539896 9540425 -134246030 - L2 LINE L2 -1980 1334 776 2749 165 12 12 chr12 9540425 9540911 -134245544 - MER66B LTR ERV1 0 486 1 363 348 75 40 chr12 9540911 9541030 -134245425 - L2 LINE L2 -2538 776 663 35 71 0 0 chr12 9541105 9541175 -134245280 + AT_rich Low_complexity Low_complexity 1 70 0 2027 145 3 7 chr12 9541319 9541629 -134244826 + AluJo SINE Alu 1 309 -3 222 330 97 0 chr12 9542205 9542308 -134244147 - L2 LINE L2 0 3313 3201 191 363 66 0 chr12 9542746 9542837 -134243618 - L2 LINE L2 -820 2494 2398 2330 79 10 0 chr12 9542880 9543172 -134243283 - AluSp SINE Alu -18 295 1 2631 20 0 7 chr12 9543322 9543626 -134242829 + AluY SINE Alu 1 302 -9 199 284 181 39 chr12 9543678 9543910 -134242545 - L2 LINE L2 -1149 2165 1901 1044 219 134 42 chr12 9544571 9545161 -134241294 - MER69 DNA AcHobo -38 2488 1845 526 327 112 49 chr12 9545388 9545881 -134240574 - L2 LINE L2 -484 2830 2307 881 175 92 0 chr12 9545888 9546105 -134240350 + L1MA7 LINE L1 6053 6289 -2 210 204 91 0 chr12 9546212 9546256 -134240199 - L2 LINE L2 -2683 631 584 2273 64 3 3 chr12 9546604 9546911 -134239544 + AluY SINE Alu 1 307 0 187 203 27 0 chr12 9547327 9547401 -134239054 + (TA)n Simple_repeat Simple_repeat 1 76 0 472 273 77 67 chr12 9548294 9548503 -134237952 + MIR SINE MIR 49 259 -3 34 55 0 0 chr12 9548651 9548706 -134237749 + AT_rich Low_complexity Low_complexity 1 55 0 1927 167 117 65 chr12 9549264 9549744 -134236711 - MLT1D LTR MaLR 0 505 1 381 240 57 91 chr12 9549757 9549932 -134236523 - MLT1D-int LTR MaLR -15 1356 1188 354 310 26 9 chr12 9549923 9550036 -134236419 - MLT1D-int LTR MaLR -296 1075 961 * 775 313 13 5 chr12 9550143 9550367 -134236088 - MLT1D-int LTR MaLR -485 886 661 744 230 7 109 chr12 9550427 9550701 -134235754 - MLT1D-int LTR MaLR -707 664 419 * 2018 259 99 8 chr12 9550691 9551587 -134234868 - L1M4 LINE L1 -2552 3594 2617 2277 60 0 0 chr12 9551639 9551968 -134234487 - AluY SINE Alu 0 329 1 12243 150 8 3 chr12 9556829 9560650 -134225805 - L1PA11 LINE L1 0 6174 2205 190 367 0 0 chr12 9560659 9560719 -134225736 + L2 LINE L2 3254 3313 0 473 334 113 38 chr12 9561176 9561840 -134224615 - L2 LINE L2 0 3313 2589 217 397 66 0 chr12 9562193 9562329 -134224126 + MIR3 SINE MIR 34 178 -30 2453 58 0 16 chr12 9563060 9563391 -134223064 + AluY SINE Alu 1 311 0 300 262 54 102 chr12 9564943 9565164 -134221291 - MLT1J2 LTR MaLR 0 450 237 265 167 361 0 chr12 9565190 9565262 -134221193 - MLT1J2 LTR MaLR -283 167 70 282 259 38 84 chr12 9565736 9565867 -134220588 + MIR SINE MIR 67 191 -71 26 98 0 0 chr12 9566437 9566519 -134219936 + AT_rich Low_complexity Low_complexity 1 82 0 318 35 0 86 chr12 9567136 9567194 -134219261 - L1PA16 LINE L1 -2 6164 6112 234 256 0 0 chr12 9567836 9567914 -134218541 + GA-rich Low_complexity Low_complexity 3 80 0 278 308 0 0 chr12 9569973 9570082 -134216373 + GA-rich Low_complexity Low_complexity 1 109 0 210 71 0 0 chr12 9570861 9570889 -134215566 + (A)n Simple_repeat Simple_repeat 1 28 0 300 266 75 12 chr12 9571095 9571268 -134215187 + MER113 DNA MER1_type? 3 186 -335 2116 285 81 19 chr12 9571402 9572510 -134213945 + L2 LINE L2 2134 3310 -3 1732 170 52 0 chr12 9572711 9572999 -134213456 + AluSx SINE Alu 1 303 -9 202 275 0 29 chr12 9578862 9578931 -134207524 + (TA)n Simple_repeat Simple_repeat 2 68 0 2299 99 0 13 chr12 9579243 9579557 -134206898 + AluSg SINE Alu 1 310 0 189 0 0 0 chr12 9579963 9579984 -134206471 + (A)n Simple_repeat Simple_repeat 1 21 0 467 131 75 0 chr12 9581732 9581839 -134204616 + L1MDa LINE L1 2350 2464 -4076 1141 256 68 9 chr12 9581844 9582168 -134204287 + L1MD2 LINE L1 5723 6065 -294 287 304 44 59 chr12 9582217 9582490 -134203965 - L1M4 LINE L1 -1147 4999 4731 2493 141 35 2 chr12 9582546 9582949 -134203506 + MSTA LTR MaLR 13 428 0 11574 127 22 22 chr12 9583400 9585277 -134201178 + L1P LINE L1 65 1941 -4205 5596 49 11 7 chr12 9585314 9586026 -134200429 + L1PA6 LINE L1 5440 6154 0 1659 194 67 58 chr12 9586521 9586984 -134199471 + MLT1C LTR MaLR 1 467 0 2274 128 0 0 chr12 9587136 9587442 -134199013 + AluSc SINE Alu 1 306 -3 644 203 0 38 chr12 9587485 9587618 -134198837 + FLAM_A SINE Alu 1 128 -5 2431 57 0 10 chr12 9587809 9588109 -134198346 + AluY SINE Alu 1 297 -14 1803 119 60 0 chr12 9588765 9589073 -134197382 - AluSq SINE Alu 0 324 1 668 229 127 82 chr12 9589107 9589548 -134196907 - LTR37B LTR ERV1 -1 467 7 5735 120 8 4 chr12 9589573 9591025 -134195430 - L1PA15 LINE L1 -4 6161 4679 2546 189 28 6 chr12 9591030 9591527 -134194928 - L1PA15 LINE L1 -1864 4282 3775 3011 107 7 13 chr12 9591550 9591649 -134194806 - L1PB1 LINE L1 -2 6149 6051 2266 102 102 3 chr12 9591649 9591992 -134194463 - MER51B LTR ERV1 0 377 1 3011 107 7 13 chr12 9591992 9592350 -134194105 - L1PB1 LINE L1 -100 6051 5695 2611 231 25 6 chr12 9592358 9592436 -134194019 + L1 LINE L1 4613 4688 -1458 260 49 49 0 chr12 9592436 9592477 -134193978 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2611 231 25 6 chr12 9592477 9593030 -134193425 + L1 LINE L1 4688 5256 -890 * 5594 228 18 1 chr12 9593023 9593628 -134192827 - L1PA15 LINE L1 -2358 3788 3195 189 0 0 0 chr12 9593628 9593649 -134192806 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5594 228 18 1 chr12 9593649 9594384 -134192071 - L1PA15 LINE L1 -2951 3195 2425 385 226 46 109 chr12 9594457 9594925 -134191530 - MER31-int LTR ERV1 -1172 5059 3637 377 196 20 85 chr12 9595118 9595277 -134191178 + L1 LINE L1 5188 5336 -810 4217 202 11 29 chr12 9595712 9597383 -134189072 + L1MB7 LINE L1 4516 6155 -29 2797 256 60 21 chr12 9597752 9599013 -134187442 + L1M3a LINE L1 305 1390 -4575 401 324 60 29 chr12 9599020 9599301 -134187154 + L1ME LINE L1 5477 5766 -355 513 315 75 29 chr12 9599854 9600288 -134186167 + L1ME LINE L1 5365 5823 -298 228 182 23 0 chr12 9600568 9600612 -134185843 - U7 snRNA snRNA -8 55 11 21 71 0 0 chr12 9600741 9600783 -134185672 + AT_rich Low_complexity Low_complexity 1 42 0 349 336 17 8 chr12 9601007 9601126 -134185329 + L2 LINE L2 3174 3293 -20 36 40 0 0 chr12 9603888 9603938 -134182517 + AT_rich Low_complexity Low_complexity 1 50 0 299 307 87 0 chr12 9604679 9604806 -134181649 + MIR SINE MIR 110 247 -15 1418 172 40 30 chr12 9605074 9605371 -134181084 - AluJo SINE Alu -12 300 1 2560 53 0 0 chr12 9606544 9606847 -134179608 + AluY SINE Alu 1 303 -8 23 0 0 0 chr12 9608239 9608262 -134178193 + AT_rich Low_complexity Low_complexity 1 23 0 1398 183 49 28 chr12 9611830 9612114 -134174341 - AluJo SINE Alu -22 290 1 391 105 89 0 chr12 9612191 9612455 -134174000 + (TA)n Simple_repeat Simple_repeat 1 287 0 388 92 46 58 chr12 9612455 9612629 -134173826 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 228 109 31 16 chr12 9612670 9612734 -134173721 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 26 0 0 0 chr12 9612747 9612773 -134173682 + AT_rich Low_complexity Low_complexity 1 26 0 225 117 67 0 chr12 9612780 9612840 -134173615 + (TA)n Simple_repeat Simple_repeat 2 65 0 42 52 0 31 chr12 9614304 9614400 -134172055 + AT_rich Low_complexity Low_complexity 1 93 0 1504 169 4 40 chr12 9614431 9614709 -134171746 + AluJo SINE Alu 1 268 -44 289 122 0 92 chr12 9614722 9614820 -134171635 + (GGGAA)n Simple_repeat Simple_repeat 3 91 0 28 0 0 0 chr12 9614928 9614956 -134171499 + AT_rich Low_complexity Low_complexity 1 28 0 699 191 40 10 chr12 9614956 9615155 -134171300 - L1MA4 LINE L1 -11 6289 6085 367 207 200 41 chr12 9615177 9615322 -134171133 - MIR SINE MIR -71 191 24 2619 36 0 0 chr12 9615421 9615722 -134170733 + AluY SINE Alu 1 301 -10 34 0 0 0 chr12 9618667 9618701 -134167754 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr12 9618763 9618799 -134167656 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 9619453 9619475 -134166980 + AT_rich Low_complexity Low_complexity 1 22 0 5376 108 15 4 chr12 9619481 9621234 -134165221 - L1PA12 LINE L1 -7 6161 4441 10696 203 74 22 chr12 9621234 9623174 -134163281 - L1PA13 LINE L1 -1580 5217 3378 3343 41 5 0 chr12 9623174 9623585 -134162870 - L1PA7 LINE L1 -1 6153 5741 10696 203 74 22 chr12 9623585 9624079 -134162376 - L1PA13 LINE L1 -3419 3378 2911 2288 114 7 0 chr12 9624079 9624385 -134162070 + AluSc SINE Alu 1 308 -1 10696 203 74 22 chr12 9624385 9626058 -134160397 - L1PA13 LINE L1 -3886 2911 828 1774 146 46 7 chr12 9626496 9626776 -134159679 + AluJo SINE Alu 1 291 -21 757 272 16 4 chr12 9626776 9627022 -134159433 - L1MA9 LINE L1 -39 6273 6025 263 263 44 13 chr12 9628256 9628354 -134158101 - MIR SINE MIR -66 142 56 5773 35 0 4 chr12 9629266 9629974 -134156481 - L1P LINE L1 -887 5259 4555 718 0 0 0 chr12 9629974 9630039 -134156416 + L1PA2 LINE L1 6064 6165 0 199 0 0 0 chr12 9630039 9630061 -134156394 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 243 277 151 54 chr12 9630098 9630264 -134156191 - MIR SINE MIR -27 235 54 249 324 67 9 chr12 9630763 9630868 -134155587 - L2 LINE L2 0 3313 3203 4148 168 19 1 chr12 9631351 9632070 -134154385 - MER44D DNA MER2_type 0 605 2 2078 211 65 36 chr12 9632611 9633138 -134153317 - MLT1F LTR MaLR 0 542 1 279 244 103 114 chr12 9633143 9633487 -134152968 - MLT1F-int LTR MaLR -4 1731 1023 22563 178 20 12 chr12 9633709 9640176 -134146279 - L1PA11 LINE L1 -2 7610 12 260 358 8 25 chr12 9640830 9640950 -134145505 - MIR3 SINE MIR -36 172 55 280 326 23 0 chr12 9641949 9642035 -134144420 + MIR3 SINE MIR 93 180 -28 721 195 58 49 chr12 9642602 9642807 -134143648 + L1PA12 LINE L1 142 348 -7233 22 0 0 0 chr12 9645403 9645425 -134141030 + AT_rich Low_complexity Low_complexity 1 22 0 1978 65 43 47 chr12 9646715 9646991 -134139464 - AluY SINE Alu -13 298 24 1892 89 8 0 chr12 9647160 9647419 -134139036 + L1PA11 LINE L1 5911 6171 -3 228 258 191 11 chr12 9647732 9647821 -134138634 - MIR SINE MIR -67 141 37 1917 132 14 0 chr12 9647923 9648212 -134138243 + AluSx SINE Alu 1 293 -19 252 269 70 58 chr12 9648840 9649024 -134137431 - MIR SINE MIR 0 262 1 2402 39 0 4 chr12 9649253 9649533 -134136922 - AluY SINE Alu -13 298 20 2182 112 43 125 chr12 9650308 9650771 -134135684 - MSTC LTR MaLR 0 428 4 389 296 44 7 chr12 9650772 9650907 -134135548 - MIR SINE MIR -64 198 59 276 100 0 0 chr12 9651410 9651450 -134135005 + (A)n Simple_repeat Simple_repeat 1 40 0 1605 174 14 18 chr12 9651930 9652211 -134134244 + AluJo SINE Alu 1 280 -32 1578 87 48 0 chr12 9653017 9653246 -134133209 + L1PA10 LINE L1 5918 6157 -11 213 39 0 0 chr12 9653257 9653283 -134133172 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 239 139 0 0 chr12 9654145 9654181 -134132274 - U2 snRNA snRNA -152 36 1 279 54 0 0 chr12 9654667 9654704 -134131751 + (CAA)n Simple_repeat Simple_repeat 3 39 0 585 245 37 18 chr12 9655844 9656007 -134130448 - MER20 DNA MER1_type 0 219 54 320 242 61 0 chr12 9657432 9657531 -134128924 - L1M4 LINE L1 -3667 2479 2375 278 317 58 19 chr12 9657599 9657703 -134128752 - MER5A DNA MER1_type -46 143 36 1420 131 0 5 chr12 9659686 9659919 -134126536 + AluSg/x SINE Alu 86 317 0 565 240 129 0 chr12 9660933 9661104 -134125351 + MER58A DNA MER1_type 29 221 -3 385 308 208 23 chr12 9661461 9661893 -134124562 - L2 LINE L2 -2235 1079 568 736 142 154 0 chr12 9661893 9662062 -134124393 + L1MA8 LINE L1 6076 6270 -21 550 330 99 36 chr12 9662111 9662444 -134124011 - L2 LINE L2 -2736 578 225 1430 273 31 69 chr12 9662507 9663187 -134123268 + L1M3d LINE L1 2 512 -5379 30 0 0 0 chr12 9664203 9664233 -134122222 + AT_rich Low_complexity Low_complexity 1 30 0 1870 158 0 3 chr12 9664261 9664552 -134121903 + AluJb SINE Alu 1 290 -22 221 323 62 0 chr12 9664632 9664749 -134121706 + MIR SINE MIR 67 189 -69 368 54 0 36 chr12 9665650 9665706 -134120749 + (TTTTC)n Simple_repeat Simple_repeat 3 56 0 29 28 0 0 chr12 9668220 9668256 -134118199 + AT_rich Low_complexity Low_complexity 1 36 0 2353 249 104 40 chr12 9668339 9669648 -134116807 - Charlie2a DNA MER1_type -4 2858 1466 873 269 51 31 chr12 9669668 9670058 -134116397 - Charlie2b DNA MER1_type -2090 692 295 1046 275 101 9 chr12 9671223 9671874 -134114581 + L1ME3A LINE L1 5149 5894 -276 766 316 80 55 chr12 9672051 9672538 -134113917 + L2 LINE L2 2815 3313 0 297 0 0 0 chr12 9672800 9672833 -134113622 + (CA)n Simple_repeat Simple_repeat 2 34 0 514 171 9 18 chr12 9673984 9674095 -134112360 - MLT1A2 LTR MaLR 0 374 265 494 234 61 11 chr12 9674567 9674714 -134111741 + MIR SINE MIR 30 182 -63 462 236 174 108 chr12 9674844 9675205 -134111250 - L2 LINE L2 -2 3311 2927 466 236 202 35 chr12 9675659 9675862 -134110593 + MIR SINE MIR 21 257 -5 2449 48 3 22 chr12 9676712 9677023 -134109432 + AluY SINE Alu 1 305 -6 2457 73 0 0 chr12 9677854 9678156 -134108299 - AluY SINE Alu -4 307 6 305 202 109 126 chr12 9678289 9678472 -134107983 - HAL1 LINE L1 -379 2128 1949 815 214 74 68 chr12 9678493 9678830 -134107625 - MLT1A2 LTR MaLR 0 374 36 474 111 100 22 chr12 9678830 9678920 -134107535 - FLAM_A SINE Alu -16 126 30 231 320 0 0 chr12 9679202 9679277 -134107178 - HAL1 LINE L1 -1631 876 802 780 296 206 37 chr12 9679307 9679932 -134106523 - HAL1 LINE L1 -1767 740 10 1629 188 11 11 chr12 9679932 9680219 -134106236 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 9681382 9681405 -134105050 + AT_rich Low_complexity Low_complexity 1 23 0 287 322 81 72 chr12 9681442 9681678 -134104777 - MIR SINE MIR -23 239 2 1461 219 22 70 chr12 9681879 9682281 -134104174 - MLT1B LTR MaLR 0 390 8 694 180 0 23 chr12 9682335 9682463 -134103992 + FLAM_A SINE Alu 8 132 -10 267 54 0 0 chr12 9682492 9682529 -134103926 + (A)n Simple_repeat Simple_repeat 1 37 0 283 379 19 6 chr12 9684526 9684687 -134101768 - MIR SINE MIR -79 183 21 207 290 16 0 chr12 9684919 9684981 -134101474 - L2 LINE L2 -24 3248 3186 314 314 167 40 chr12 9685251 9685604 -134100851 + L2 LINE L2 2873 3270 -2 520 367 86 3 chr12 9686456 9686783 -134099672 - L2 LINE L2 -5 3267 2914 185 200 0 0 chr12 9689776 9689811 -134096644 - MIR SINE MIR -75 133 99 456 254 92 8 chr12 9689964 9690094 -134096361 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 9691058 9691147 -134095308 - MIR SINE MIR -114 148 58 2007 107 6 28 chr12 9692156 9692474 -134093981 + AluSx SINE Alu 1 311 -1 281 256 47 110 chr12 9695961 9696059 -134090396 + MIR SINE MIR 46 128 -134 2259 76 3 3 chr12 9696059 9696362 -134090093 + AluY SINE Alu 1 303 -8 281 256 47 110 chr12 9696362 9696454 -134090001 + MIR SINE MIR 128 224 -38 685 267 174 20 chr12 9697368 9697734 -134088721 - L1MC4 LINE L1 -807 7001 6534 2019 116 30 0 chr12 9697734 9698036 -134088419 - AluSx SINE Alu -1 311 1 685 267 174 20 chr12 9698036 9698179 -134088276 - L1MC4 LINE L1 -1274 6534 6414 460 282 33 14 chr12 9698299 9698512 -134087943 - L1MC4a LINE L1 -1538 6270 6054 556 288 161 8 chr12 9698747 9698985 -134087470 - L1MC4a LINE L1 -473 5648 5419 231 312 0 13 chr12 9698985 9699062 -134087393 - MER5B DNA MER1_type -102 76 1 226 214 0 0 chr12 9704945 9705001 -134081454 + C-rich Low_complexity Low_complexity 5 60 0 2325 77 0 3 chr12 9705707 9706006 -134080449 + AluY SINE Alu 1 298 -13 208 280 0 0 chr12 9706081 9706131 -134080324 + GA-rich Low_complexity Low_complexity 1 50 0 312 303 200 5 chr12 9706823 9707008 -134079447 + L2 LINE L2 2870 3090 -182 517 228 181 0 chr12 9707047 9707196 -134079259 + MIR SINE MIR 25 200 -62 369 360 41 0 chr12 9707297 9707444 -134079011 + L2 LINE L2 3119 3271 -1 200 278 0 37 chr12 9709133 9709187 -134077268 + MIR SINE MIR 103 154 -108 1260 171 72 48 chr12 9709605 9709898 -134076557 + AluJb SINE Alu 5 304 -8 1145 171 116 3 chr12 9710082 9710309 -134076146 + MER33 DNA MER1_type 1 305 -2319 2143 109 7 0 chr12 9710309 9710612 -134075843 - AluSx SINE Alu -7 305 1 1145 171 116 3 chr12 9710612 9710668 -134075787 + MER33 DNA MER1_type 305 353 -10 291 389 72 23 chr12 9710924 9711145 -134075310 - MIR SINE MIR -30 232 1 306 0 0 0 chr12 9711257 9711291 -134075164 + (TA)n Simple_repeat Simple_repeat 1 34 0 208 265 82 20 chr12 9711353 9711451 -134075004 - MIR SINE MIR -55 207 104 4093 91 33 6 chr12 9712333 9712882 -134073573 - LTR6A LTR ERV1 0 564 1 1044 212 24 9 chr12 9712882 9713094 -134073361 - HERVS71 LTR ERV1 -105 8873 8659 * 12706 154 8 10 chr12 9713085 9715068 -134071387 - HERVS71 LTR ERV1 -2023 6955 4977 12468 179 21 10 chr12 9715061 9717196 -134069259 - HERVS71 LTR ERV1 -5477 3501 1344 * 805 174 5 97 chr12 9717209 9717416 -134069039 - MER53 DNA DNA 0 189 2 635 466 0 6 chr12 9717522 9717700 -134068755 + polypyrimidine Low_complexity Low_complexity 2 178 0 692 260 103 55 chr12 9717724 9718299 -134068156 - L2 LINE L2 -38 3275 2676 220 298 96 10 chr12 9718302 9718406 -134068049 + L2 LINE L2 3186 3298 -15 224 77 26 0 chr12 9718409 9718448 -134068007 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 266 305 232 0 chr12 9718617 9718781 -134067674 + L3 LINE CR1 560 761 -816 449 297 40 6 chr12 9718957 9719132 -134067323 - MIR SINE MIR -73 189 9 2881 117 9 14 chr12 9719186 9719629 -134066826 - L1PA13 LINE L1 0 6163 5723 180 0 0 0 chr12 9719637 9719657 -134066798 + (CATAG)n Simple_repeat Simple_repeat 4 23 0 357 332 64 52 chr12 9719668 9720011 -134066444 - L1ME3A LINE L1 -36 6134 5788 990 286 82 23 chr12 9720217 9720749 -134065706 - L1ME3A LINE L1 -465 5705 5140 831 238 152 36 chr12 9721469 9721771 -134064684 - MLT1E LTR MaLR -36 557 221 309 26 0 0 chr12 9721794 9721832 -134064623 + (GA)n Simple_repeat Simple_repeat 1 38 0 718 196 65 7 chr12 9721922 9722075 -134064380 + MLT1A1 LTR MaLR 1 162 -203 1446 219 37 13 chr12 9722845 9723220 -134063235 - MLT1B LTR MaLR -6 384 1 301 339 74 48 chr12 9723238 9723468 -134062987 - L1ME LINE L1 -469 5652 5417 257 333 47 16 chr12 9724012 9724141 -134062314 - L2 LINE L2 -1 3312 3180 4321 62 23 9 chr12 9725809 9726835 -134059620 - MER11A LTR ERVK 0 1266 1 3919 232 57 60 chr12 9727071 9727367 -134059088 - MER89-int LTR ERV1 -5142 1659 1364 2072 206 0 8 chr12 9727367 9727735 -134058720 - MLT1A1 LTR MaLR 0 365 1 3919 232 57 60 chr12 9727735 9728176 -134058279 - MER89-int LTR ERV1 -5437 1364 924 1234 219 13 43 chr12 9728176 9728343 -134058112 - AluJo SINE Alu -17 295 139 405 0 0 0 chr12 9728343 9728388 -134058067 + (TA)n Simple_repeat Simple_repeat 2 46 0 1234 219 13 43 chr12 9728388 9728522 -134057933 - AluJo SINE Alu -173 139 3 3919 232 57 60 chr12 9728522 9729145 -134057310 - MER89-int LTR ERV1 -5877 924 301 253 306 74 25 chr12 9730362 9730483 -134055972 + L2 LINE L2 3138 3264 -8 323 316 140 12 chr12 9730656 9730827 -134055628 + MIR SINE MIR 46 238 -24 348 24 0 0 chr12 9731064 9731105 -134055350 + (TG)n Simple_repeat Simple_repeat 2 42 0 1998 136 0 0 chr12 9731129 9731424 -134055031 - AluSx SINE Alu -17 295 1 203 390 39 0 chr12 9732346 9732423 -134054032 - L2 LINE L2 -36 3277 3198 214 345 109 8 chr12 9732792 9732911 -134053544 + L2 LINE L2 3169 3299 -14 426 283 14 57 chr12 9733496 9733708 -134052747 - L1PBb LINE L1 -5234 970 768 415 181 14 0 chr12 9733818 9733890 -134052565 + MER21B LTR ERV1 1 73 -790 234 0 0 0 chr12 9734626 9734652 -134051803 + (A)n Simple_repeat Simple_repeat 1 26 0 803 161 0 8 chr12 9735132 9735256 -134051199 - FLAM_C SINE Alu -19 124 2 1750 188 35 60 chr12 9735805 9736272 -134050183 + LTR56 LTR ERV1 9 437 0 212 225 0 0 chr12 9736863 9736903 -134049552 + L2 LINE L2 3273 3312 -1 552 294 22 13 chr12 9737181 9737388 -134049067 + MIR SINE MIR 8 262 0 312 312 54 11 chr12 9737773 9737866 -134048589 + MIR3 SINE MIR 85 181 -27 22 56 0 0 chr12 9738372 9738408 -134048047 + AT_rich Low_complexity Low_complexity 1 36 0 1453 186 41 29 chr12 9738479 9738893 -134047562 - SVA Other Other -536 850 432 241 280 51 34 chr12 9740344 9740462 -134045993 + L1ME4a LINE L1 5964 6083 -38 1635 163 3 20 chr12 9740588 9740882 -134045573 + AluJo SINE Alu 4 292 -20 590 214 149 7 chr12 9741769 9741923 -134044532 + MLT1C LTR MaLR 292 467 0 220 365 47 16 chr12 9742892 9743084 -134043371 + MIR3 SINE MIR 4 201 -7 2980 137 41 30 chr12 9743709 9744248 -134042207 - LTR10A LTR ERV1 -64 545 1 14322 75 14 4 chr12 9744294 9744943 -134041512 - L1PA6 LINE L1 0 6154 5513 2346 70 0 3 chr12 9744943 9745244 -134041211 - AluY SINE Alu -11 300 1 14322 75 14 4 chr12 9745244 9749187 -134037268 - L1PA6 LINE L1 -641 5513 1442 1155 164 108 15 chr12 9750462 9750731 -134035724 - L1MB7 LINE L1 0 6184 5891 445 241 141 29 chr12 9750761 9750931 -134035524 + MER90 LTR ERV1 426 614 0 1395 203 10 17 chr12 9752112 9752443 -134034012 - AluJb SINE Alu 0 312 1 474 243 10 0 chr12 9752495 9752598 -134033857 - MIR SINE MIR -116 146 43 499 242 31 40 chr12 9752737 9752896 -134033559 - MIR3 SINE MIR -12 196 39 258 320 29 10 chr12 9753354 9753457 -134032998 + L2 LINE L2 2715 2819 -495 2306 179 94 28 chr12 9753568 9753633 -134032822 - MER101B LTR ERV1 -2 568 509 3233 92 38 5 chr12 9753633 9754078 -134032377 - LTR46 LTR ERV1 0 460 1 2306 179 94 28 chr12 9754078 9754543 -134031912 - MER101B LTR ERV1 -61 509 3 259 298 43 11 chr12 9754625 9754719 -134031736 + L2 LINE L2 3215 3311 -2 1766 182 43 52 chr12 9756238 9756697 -134029758 + LTR56 LTR ERV1 13 437 0 402 298 53 23 chr12 9757650 9757781 -134028674 + MIR SINE MIR 8 142 -120 225 349 70 12 chr12 9757785 9757871 -134028584 - MIR SINE MIR -152 110 20 426 336 118 22 chr12 9759175 9759404 -134027051 + MIR SINE MIR 12 262 0 505 294 36 50 chr12 9759596 9759933 -134026522 + L1ME4a LINE L1 5479 5810 -311 2869 171 0 6 chr12 9760428 9760931 -134025524 - L1PA13 LINE L1 0 6163 5664 304 235 128 39 chr12 9760936 9761038 -134025417 + L1ME4a LINE L1 6000 6110 -11 1113 280 73 22 chr12 9761841 9762295 -134024160 - L1ME3 LINE L1 -244 5918 5442 883 211 16 5 chr12 9762327 9762517 -134023938 - AluJo SINE Alu -1 311 120 346 262 26 84 chr12 9762517 9762642 -134023813 - L1ME3 LINE L1 -743 5403 5272 2299 61 7 0 chr12 9762642 9762936 -134023519 - AluY SINE Alu -1 310 15 346 262 26 84 chr12 9762936 9763118 -134023337 - L1ME3 LINE L1 -874 5272 5124 28 48 0 0 chr12 9763143 9763185 -134023270 + AT_rich Low_complexity Low_complexity 1 42 0 1616 264 55 28 chr12 9763320 9764010 -134022445 - L1ME3 LINE L1 -1120 5026 4318 575 139 0 0 chr12 9764024 9764125 -134022330 - L1MB3 LINE L1 -3 6180 6080 2691 258 53 32 chr12 9764150 9765014 -134021441 - L1ME1 LINE L1 -5 6161 5280 599 275 0 0 chr12 9765020 9765151 -134021304 + FLAM_A SINE Alu 1 131 -2 1944 222 68 0 chr12 9765174 9765598 -134020857 + MLT1D LTR MaLR 1 453 -52 208 203 85 17 chr12 9766521 9766580 -134019875 + L2 LINE L2 2991 3053 -219 207 263 138 25 chr12 9767028 9767108 -134019347 - L2 LINE L2 0 3272 3184 1340 216 88 10 chr12 9767414 9767720 -134018735 - MER2 DNA MER2_type -13 332 3 262 318 37 19 chr12 9768330 9768437 -134018018 - L2 LINE L2 -41 3231 3123 647 229 78 26 chr12 9769967 9770120 -134016335 + MER58B DNA MER1_type 181 341 0 2272 101 0 0 chr12 9771635 9771941 -134014514 + AluSg SINE Alu 2 307 -3 206 229 104 0 chr12 9772359 9772407 -134014048 - MIR SINE MIR -6 256 204 255 231 148 19 chr12 9772769 9772877 -134013578 + MER5A DNA MER1_type 37 158 -31 * 396 210 12 0 chr12 9772815 9772896 -134013559 - MER5A DNA MER1_type -84 105 24 1589 249 46 60 chr12 9772951 9773452 -134013003 + MLT1F1 LTR MaLR 74 567 0 187 162 0 27 chr12 9773502 9773539 -134012916 + MIR SINE MIR 161 196 -66 1503 168 28 28 chr12 9773540 9773831 -134012624 + AluJo SINE Alu 6 296 -16 2072 118 3 0 chr12 9773831 9774136 -134012319 + AluSx SINE Alu 1 306 -6 316 125 0 0 chr12 9774151 9774199 -134012256 + MIR SINE MIR 183 230 -32 315 208 39 0 chr12 9774246 9774323 -134012132 - MER94 DNA DNA -51 83 4 1907 142 3 0 chr12 9775125 9775413 -134011042 + AluJo SINE Alu 5 293 -19 2042 141 0 3 chr12 9775788 9776093 -134010362 + AluSx SINE Alu 1 304 -8 1331 173 59 7 chr12 9776251 9776523 -134009932 - AluJb SINE Alu -26 286 1 254 286 143 0 chr12 9777472 9777570 -134008885 - L2 LINE L2 -8 3264 3153 2080 106 0 0 chr12 9778324 9778608 -134007847 - AluSx SINE Alu -8 304 21 1810 86 83 43 chr12 9778668 9778969 -134007486 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 9779562 9779585 -134006870 + AT_rich Low_complexity Low_complexity 1 23 0 1031 91 0 85 chr12 9779591 9779767 -134006688 + AluSx SINE Alu 14 174 -138 1092 245 48 75 chr12 9779767 9780183 -134006272 + MLT1F1 LTR MaLR 163 567 0 1543 127 0 4 chr12 9980278 9980514 -133805941 - L1P LINE L1 -2524 3622 3388 8060 101 10 15 chr12 9980515 9981675 -133804780 - L1P3 LINE L1 -5299 1162 8 3433 145 0 11 chr12 9982368 9982900 -133803555 - MER1A DNA MER1_type 0 527 2 249 257 143 38 chr12 9983069 9983174 -133803281 + MIR SINE MIR 46 161 -101 195 69 0 0 chr12 9983239 9983268 -133803187 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 9983560 9983584 -133802871 + (T)n Simple_repeat Simple_repeat 1 24 0 1993 139 13 7 chr12 9983805 9984106 -133802349 + AluSx SINE Alu 1 303 -9 3534 249 38 41 chr12 9984134 9987231 -133799224 + L1M4c LINE L1 31 3333 -3049 21 71 0 0 chr12 9987285 9987327 -133799128 + AT_rich Low_complexity Low_complexity 1 42 0 1963 130 0 14 chr12 9987457 9987790 -133798665 - AluSx SINE Alu 0 348 20 233 259 104 7 chr12 9987860 9987995 -133798460 + L1ME LINE L1 5682 5829 -333 193 316 168 0 chr12 9989012 9989107 -133797348 + L2 LINE L2 3198 3308 -5 1730 178 0 25 chr12 9989169 9989483 -133796972 - AluJb SINE Alu -6 306 1 437 200 200 0 chr12 9990286 9990411 -133796044 + L1MA9 LINE L1 5301 5450 -862 1327 164 19 0 chr12 9990427 9990640 -133795815 - THE1B LTR MaLR -2 362 146 324 48 0 0 chr12 9991225 9991267 -133795188 + (ATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr12 9991904 9991933 -133794522 + AT_rich Low_complexity Low_complexity 1 29 0 596 198 60 0 chr12 9991934 9992050 -133794405 - THE1B LTR MaLR -252 123 1 3204 184 62 49 chr12 9992051 9992391 -133794064 + L1MA9 LINE L1 5464 5798 -514 225 94 0 0 chr12 9992391 9992423 -133794032 + (TA)n Simple_repeat Simple_repeat 1 32 0 3204 184 62 49 chr12 9992423 9992466 -133793989 + L1MA9 LINE L1 5798 5839 -473 3739 101 0 4 chr12 9992466 9992979 -133793476 + MER9 LTR ERVK 1 511 0 3204 184 62 49 chr12 9992979 9993394 -133793061 + L1MA9 LINE L1 5839 6274 -38 1488 138 49 30 chr12 9993463 9993768 -133792687 - L1MA7 LINE L1 0 6291 5981 1766 175 49 3 chr12 9993775 9994123 -133792332 + L1 LINE L1 4875 5238 -908 1560 226 107 15 chr12 9994123 9994663 -133791792 + LTR48B LTR ERV1 1 590 -54 1438 246 68 64 chr12 9995037 9995477 -133790978 + MLT2B3 LTR ERVL 1 442 -112 485 163 47 0 chr12 9995762 9995848 -133790607 - MLT2B2 LTR ERVL -425 90 1 2248 203 82 59 chr12 9997179 9997987 -133788468 - LTR1B LTR ERV1 0 826 1 1636 216 0 0 chr12 9998745 9999064 -133787391 - AluJb SINE Alu 0 319 1 10446 166 33 4 chr12 9999777 10002522 -133783933 - L1PA12 LINE L1 0 6168 3355 314 164 15 15 chr12 10002848 10002915 -133783540 + LTR1 LTR ERV1 12 78 -707 * 976 101 7 14 chr12 10002909 10003047 -133783408 + LTR1 LTR ERV1 649 785 0 12158 161 30 12 chr12 10003139 10005157 -133781298 + HUERS-P2 LTR ERV1 207 2260 -828 3859 163 26 8 chr12 10005157 10005814 -133780641 + HUERS-P2 LTR ERV1 2420 3088 0 3824 119 52 103 chr12 10005820 10006629 -133779826 + LTR1 LTR ERV1 18 785 0 22 0 0 0 chr12 10006876 10006898 -133779557 + AT_rich Low_complexity Low_complexity 1 22 0 1085 299 113 80 chr12 10006901 10007432 -133779023 + L2 LINE L2 1932 2547 -767 278 116 70 0 chr12 10007432 10007475 -133778980 + FLAM_A SINE Alu 64 109 -24 1085 299 113 80 chr12 10007475 10007791 -133778664 + L2 LINE L2 2547 2851 -463 1149 257 12 6 chr12 10007850 10008181 -133778274 - L1MCc LINE L1 -1926 5015 4683 2847 42 0 0 chr12 10008300 10008632 -133777823 - LTR2B LTR ERV1 0 490 159 230 333 30 10 chr12 10008640 10008739 -133777716 + L2 LINE L2 2751 2851 -463 1249 20 47 0 chr12 10008820 10008968 -133777487 - LTR2B LTR ERV1 -335 155 1 11714 172 12 6 chr12 10008968 10011006 -133775449 - Harlequin LTR ERV1 0 6896 4846 1151 124 0 0 chr12 10012500 10012661 -133773794 + AluY SINE Alu 3 163 -148 375 250 86 26 chr12 10012735 10012887 -133773568 + MER104 DNA Tc2 15 175 -5 240 217 100 0 chr12 10012884 10012944 -133773511 + MLT1J LTR MaLR 427 492 -19 * 538 264 17 17 chr12 10013025 10013199 -133773256 - L1M4 LINE L1 -1263 4883 4710 1795 237 56 52 chr12 10013199 10013896 -133772559 - L1MCc LINE L1 -3028 3913 3211 1892 175 18 45 chr12 10013896 10014297 -133772158 + MLT1B LTR MaLR 1 390 0 1795 237 56 52 chr12 10014297 10014337 -133772118 - L1MCc LINE L1 -3730 3211 3173 497 263 74 91 chr12 10014344 10014523 -133771932 - L1MCc LINE L1 -5060 1363 1191 929 174 105 65 chr12 10014523 10014614 -133771841 + AluJo SINE Alu 2 88 -214 2462 78 0 0 chr12 10014614 10014921 -133771534 + AluY SINE Alu 1 307 -4 929 174 105 65 chr12 10014921 10015105 -133771350 + AluJo SINE Alu 88 288 -14 497 263 74 91 chr12 10015105 10015264 -133771191 - L1MCc LINE L1 -5232 1191 1031 2251 74 10 7 chr12 10015711 10016010 -133770445 - AluSp SINE Alu -13 300 1 339 374 26 63 chr12 10016024 10016374 -133770081 - L1MCc LINE L1 -5630 792 456 189 276 92 13 chr12 10018400 10018476 -133767979 - L2 LINE L2 0 3313 3232 267 122 0 0 chr12 10018793 10018842 -133767613 + (CA)n Simple_repeat Simple_repeat 2 50 0 1577 275 89 50 chr12 10018844 10019275 -133767180 + L1ME LINE L1 99 512 -5568 1682 186 16 13 chr12 10019275 10019586 -133766869 + AluSx SINE Alu 1 312 0 1577 275 89 50 chr12 10019586 10020637 -133765818 + L1ME LINE L1 512 1643 -4437 532 260 93 51 chr12 10021481 10021912 -133764543 + L1MEd LINE L1 700 1148 -4971 32 67 0 0 chr12 10022393 10022453 -133764002 + AT_rich Low_complexity Low_complexity 1 60 0 196 190 52 35 chr12 10022751 10022809 -133763646 + L3 LINE CR1 623 681 -896 23 54 0 0 chr12 10023717 10023754 -133762701 + AT_rich Low_complexity Low_complexity 1 37 0 357 329 88 7 chr12 10024099 10024236 -133762219 + MIR3 SINE MIR 54 201 -7 325 331 149 11 chr12 10025451 10025626 -133760829 - MIR3 SINE MIR -4 204 6 1675 182 19 3 chr12 10026048 10026355 -133760100 - AluJb SINE Alu 0 312 1 207 416 0 0 chr12 10026663 10026740 -133759715 - L2 LINE L2 -5 3267 3191 311 337 28 72 chr12 10029165 10029414 -133757041 + HAL1 LINE L1 48 285 -2222 2043 37 53 0 chr12 10029826 10030071 -133756384 - AluY SINE Alu -17 294 37 224 283 33 0 chr12 10030175 10030235 -133756220 + L2 LINE L2 3203 3264 -8 2096 119 0 3 chr12 10030354 10030647 -133755808 + AluSg SINE Alu 1 292 -18 1495 233 68 11 chr12 10030771 10031230 -133755225 - L1M4 LINE L1 -1570 4576 4092 234 0 0 0 chr12 10031389 10031415 -133755040 + (TA)n Simple_repeat Simple_repeat 2 27 0 2279 64 0 4 chr12 10031426 10031707 -133754748 - AluY SINE Alu -31 280 1 273 330 16 62 chr12 10032035 10032405 -133754050 - L1MEc LINE L1 -5451 1374 1022 1470 320 70 23 chr12 10032803 10033530 -133752925 - HAL1 LINE L1 -861 1646 856 2163 98 3 23 chr12 10033530 10033835 -133752620 - AluSx SINE Alu -13 299 1 1470 320 70 23 chr12 10033835 10034115 -133752340 - HAL1 LINE L1 -1651 856 591 3980 142 33 40 chr12 10034126 10035513 -133750942 - pTR5 LTR ERV1 0 2438 742 2291 228 66 27 chr12 10035750 10036312 -133750143 - MLT1E LTR MaLR -1 592 9 27 49 0 0 chr12 10036421 10036462 -133749993 + AT_rich Low_complexity Low_complexity 1 41 0 393 278 101 53 chr12 10036922 10037091 -133749364 - MIR SINE MIR -60 202 26 1161 243 116 47 chr12 10037462 10038059 -133748396 - L1ME3 LINE L1 -230 5932 5295 554 279 32 0 chr12 10038088 10038246 -133748209 - L1MEc LINE L1 -5727 815 653 866 217 73 80 chr12 10038248 10038562 -133747893 - L1MEc LINE L1 -5793 749 438 2115 114 0 0 chr12 10038731 10039012 -133747443 - AluSx SINE Alu -27 285 5 416 305 142 0 chr12 10039064 10039261 -133747194 + MIR SINE MIR 38 262 0 198 0 0 0 chr12 10039679 10039701 -133746754 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 865 189 0 0 chr12 10039701 10039849 -133746606 - FRAM SINE Alu -18 148 1 525 278 10 26 chr12 10040097 10040352 -133746103 - MER20 DNA MER1_type 0 219 1 1502 228 129 42 chr12 10040518 10040991 -133745464 - MER67D LTR ERV1 0 514 1 2072 137 0 0 chr12 10041031 10041330 -133745125 - AluSx SINE Alu -13 299 1 32 98 0 0 chr12 10041560 10041662 -133744793 + AT_rich Low_complexity Low_complexity 1 102 0 606 304 78 18 chr12 10041854 10042189 -133744266 + L1M4 LINE L1 4012 4366 -1780 896 185 98 5 chr12 10042208 10042392 -133744063 - MLT1E2 LTR MaLR -8 618 418 1793 156 131 0 chr12 10042392 10042744 -133743711 + MSTB LTR MaLR 1 398 -28 599 111 0 10 chr12 10042749 10042848 -133743607 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1641 182 17 3 chr12 10042848 10043150 -133743305 - AluJb SINE Alu -4 308 3 341 286 31 0 chr12 10043191 10043289 -133743166 - MLT1E2 LTR MaLR -204 422 322 580 13 26 0 chr12 10043334 10043411 -133743044 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 286 265 61 0 chr12 10043434 10043532 -133742923 - L1ME3 LINE L1 -893 5253 5150 975 164 29 5 chr12 10043944 10044151 -133742304 - L1MA7 LINE L1 -1 6290 6079 2226 94 13 0 chr12 10044436 10044791 -133741664 + AluSx SINE Alu 1 359 0 473 303 81 30 chr12 10044797 10045193 -133741262 - L1ME4a LINE L1 -58 6063 5648 188 178 22 44 chr12 10046062 10046107 -133740348 - MIR SINE MIR -35 227 184 182 225 70 28 chr12 10046668 10046739 -133739716 - MER5C DNA MER1_type -177 147 74 2193 163 21 39 chr12 10047056 10047492 -133738963 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr12 10050329 10050350 -133736105 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1718 164 0 18 chr12 10052166 10052447 -133734008 + AluJb SINE Alu 5 280 -32 219 36 0 0 chr12 10052447 10052475 -133733980 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2437 222 50 25 chr12 10052594 10053290 -133733165 + L1ME2 LINE L1 5458 6161 -3 2318 50 0 0 chr12 10054298 10054575 -133731880 - AluY SINE Alu -11 300 24 234 0 0 0 chr12 10054854 10054880 -133731575 + (TTA)n Simple_repeat Simple_repeat 2 27 0 299 342 25 0 chr12 10056656 10056776 -133729679 - L2 LINE L2 0 3272 3150 551 329 137 44 chr12 10057382 10058008 -133728447 + L2 LINE L2 2627 3313 0 190 398 82 25 chr12 10058138 10058334 -133728121 - L2 LINE L2 -229 3084 2878 2323 88 0 38 chr12 10058939 10059258 -133727197 - AluSq SINE Alu -6 307 1 391 266 43 125 chr12 10061242 10061546 -133724909 + L1M4 LINE L1 3333 3611 -2535 390 306 90 55 chr12 10061631 10062053 -133724402 + L1M4 LINE L1 3753 4189 -1957 256 235 25 6 chr12 10062084 10062137 -133724318 - L1MD3 LINE L1 -18 7977 7927 2167 122 3 0 chr12 10062137 10062448 -133724007 - AluSx SINE Alu 0 312 1 256 235 25 6 chr12 10062448 10062617 -133723838 - L1MD3 LINE L1 -68 7927 5997 1618 149 29 16 chr12 10062626 10062941 -133723514 - L1MD3 LINE L1 -762 5597 5279 273 272 88 72 chr12 10064586 10065199 -133721256 - L1ME LINE L1 -2499 3581 2959 895 269 5 0 chr12 10065214 10065415 -133721040 + MER58A DNA MER1_type 1 202 -22 358 250 70 6 chr12 10065446 10065602 -133720853 - L1ME LINE L1 -3128 2952 2787 1004 248 113 14 chr12 10065610 10065973 -133720482 - L1ME LINE L1 -3340 2740 2342 1319 227 35 38 chr12 10066086 10066425 -133720030 + MLT2B1 LTR ERVL 1 338 -182 188 35 35 0 chr12 10066574 10066603 -133719852 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 244 224 0 0 chr12 10066661 10066710 -133719745 - MER58A DNA MER1_type -37 70 22 287 85 21 0 chr12 10066741 10066788 -133719667 + (TA)n Simple_repeat Simple_repeat 1 48 0 334 230 125 46 chr12 10066816 10066968 -133719487 - L1ME LINE L1 -5590 480 317 332 83 0 0 chr12 10066975 10067014 -133719441 - MLT2B1 LTR ERVL 0 520 479 414 0 0 0 chr12 10067014 10067060 -133719395 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 910 324 68 13 chr12 10067162 10067542 -133718913 + LTR16B LTR ERVL 64 464 0 236 320 117 0 chr12 10068212 10068315 -133718140 - MLT1L LTR MaLR -171 444 330 263 397 13 13 chr12 10068513 10068669 -133717786 + MIR SINE MIR 102 257 -5 198 0 0 0 chr12 10069043 10069065 -133717390 + (A)n Simple_repeat Simple_repeat 1 22 0 353 314 7 50 chr12 10069336 10069476 -133716979 - L2 LINE L2 0 3313 3180 594 238 18 9 chr12 10069493 10069716 -133716739 - L1M4 LINE L1 -2875 3271 3047 3881 153 35 43 chr12 10069717 10070434 -133716021 - MER50 LTR ERV1 -23 711 1 1469 226 56 16 chr12 10070434 10070877 -133715578 - L1M4 LINE L1 -3096 3050 2590 721 212 191 11 chr12 10070879 10071150 -133715305 + MER4C LTR ERV1 1 419 -178 2498 57 3 0 chr12 10071172 10071471 -133714984 - AluY SINE Alu -11 300 1 859 179 17 6 chr12 10071489 10071662 -133714793 + MER4C LTR ERV1 274 448 -17 372 204 11 21 chr12 10071696 10071789 -133714666 + MER4C-int LTR ERV1 4 95 -6503 310 256 0 12 chr12 10071902 10071988 -133714467 + MER4C-int LTR ERV1 352 436 -6162 891 227 124 23 chr12 10072257 10072556 -133713899 + LTR49 LTR ERV1 263 591 -4 1156 195 58 11 chr12 10072561 10072824 -133713631 + LTR49-int LTR ERV1 3 626 -4591 308 191 63 0 chr12 10072831 10072894 -133713561 + LTR49-int LTR ERV1 1556 1622 -3258 * 977 244 42 23 chr12 10072886 10073179 -133713276 + MER4C-int LTR ERV1 986 1866 -3014 3485 109 6 17 chr12 10073182 10073713 -133712742 - L1PA15 LINE L1 -2 6163 5639 2123 137 20 19 chr12 10073714 10074112 -133712343 + MLT2A2 LTR ERVL 1 309 -144 396 167 0 0 chr12 10074111 10074171 -133712284 - AluS SINE Alu -248 60 1 * 8297 235 22 28 chr12 10074184 10077465 -133708990 - L1PA13 LINE L1 -2438 4359 1094 314 226 29 49 chr12 10077467 10077569 -133708886 - L1MC4 LINE L1 -1339 6703 6604 2383 75 3 31 chr12 10077606 10077926 -133708529 - AluY SINE Alu 0 311 1 830 242 16 5 chr12 10077984 10078170 -133708285 + MER4C-int LTR ERV1 1844 2031 -4300 3991 125 35 8 chr12 10078173 10078795 -133707660 - LTR9B LTR ERV1 0 644 6 978 222 89 89 chr12 10078800 10079145 -133707310 + MER4C-int LTR ERV1 769 1112 -5522 2294 84 3 7 chr12 10079145 10079455 -133707000 - AluSc SINE Alu 0 309 1 978 222 89 89 chr12 10079455 10079601 -133706854 + MER4C-int LTR ERV1 1112 3414 -3220 241 226 65 0 chr12 10079605 10079667 -133706788 + MER34C LTR ERV1 165 230 -355 1523 182 94 100 chr12 10079689 10080652 -133705803 + HUERS-P1 LTR ERV1 1100 3569 -2694 * 4367 152 39 50 chr12 10080649 10082003 -133704452 + HUERS-P1 LTR ERV1 4234 5560 -771 261 184 237 13 chr12 10082003 10082079 -133704376 + LTR37A LTR ERV1 4 96 -330 794 135 43 49 chr12 10082079 10082242 -133704213 + HUERS-P1 LTR ERV1 5638 5799 -532 300 27 0 0 chr12 10082259 10082296 -133704159 + (CA)n Simple_repeat Simple_repeat 1 37 0 814 249 10 10 chr12 10082457 10082654 -133703801 + HUERS-P1 LTR ERV1 6401 6597 -1 619 255 159 8 chr12 10082656 10082929 -133703526 + MER4C LTR ERV1 1 499 -186 501 232 15 71 chr12 10083018 10083216 -133703239 + MER4C LTR ERV1 276 462 -3 1041 250 114 38 chr12 10083226 10083606 -133702849 - L1M4 LINE L1 -3548 3096 2746 1292 184 90 18 chr12 10083606 10083883 -133702572 - AluJo SINE Alu -15 297 1 1041 250 114 38 chr12 10083883 10084567 -133701888 - L1M4 LINE L1 -3898 2746 1919 3861 181 25 5 chr12 10084570 10085654 -133700801 - L1P5 LINE L1 -516 5638 4537 3464 142 54 27 chr12 10085662 10086289 -133700166 + LTR9B LTR ERV1 1 644 0 1752 290 21 38 chr12 10086289 10086896 -133699559 - L1M4 LINE L1 -5936 606 10 194 312 112 69 chr12 10087353 10087696 -133698759 - L2 LINE L2 -710 2604 2242 570 29 0 0 chr12 10087696 10087764 -133698691 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 194 312 112 69 chr12 10087764 10087795 -133698660 - L2 LINE L2 -1072 2242 2214 918 286 135 11 chr12 10087894 10088258 -133698197 + LTR16A LTR ERVL 42 450 0 285 340 21 0 chr12 10089835 10089929 -133696526 + L2 LINE L2 1125 1220 -2094 850 316 217 9 chr12 10089934 10090611 -133695844 + L2 LINE L2 1836 2653 -661 558 242 61 30 chr12 10090656 10090854 -133695601 + L2 LINE L2 3106 3309 -4 391 318 7 20 chr12 10091704 10091852 -133694603 + L2 LINE L2 1879 2024 -1290 323 115 19 0 chr12 10092398 10092450 -133694005 - MADE1 DNA Mariner -27 53 1 26 0 0 0 chr12 10093324 10093350 -133693105 + AT_rich Low_complexity Low_complexity 1 26 0 203 184 0 0 chr12 10093981 10094019 -133692436 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 34 55 0 0 chr12 10095193 10095248 -133691207 + AT_rich Low_complexity Low_complexity 1 55 0 3252 162 11 30 chr12 10095249 10095687 -133690768 - L1MC1 LINE L1 -465 5868 5423 1452 152 8 19 chr12 10095687 10095944 -133690511 - L1PB3 LINE L1 -7 6147 5894 3252 162 11 30 chr12 10095944 10096205 -133690250 - L1MC1 LINE L1 -910 5423 5182 6731 78 3 3 chr12 10096205 10097348 -133689107 - L1PA8 LINE L1 -5 6167 5024 3252 162 11 30 chr12 10097348 10097367 -133689088 - L1MC1 LINE L1 -1151 5182 5164 * 9375 111 20 0 chr12 10097351 10098741 -133687714 + L1P LINE L1 3634 5051 -1095 1486 257 21 50 chr12 10098739 10099358 -133687097 - L1MC1 LINE L1 -945 5201 4601 * 1564 204 19 11 chr12 10099355 10100049 -133686406 - L1M4 LINE L1 -581 5672 4971 1285 265 63 11 chr12 10100057 10100514 -133685941 - L1M4 LINE L1 -2045 4170 3690 1100 216 48 128 chr12 10100522 10100920 -133685535 - MLT1A2 LTR MaLR -8 366 1 1889 244 33 36 chr12 10100921 10101802 -133684653 - L1M4 LINE L1 -2523 3692 2815 486 292 71 28 chr12 10101836 10102041 -133684414 - L1M4 LINE L1 -3856 2359 2164 1615 194 16 16 chr12 10102041 10102351 -133684104 - AluJb SINE Alu -2 310 1 486 292 71 28 chr12 10102351 10102753 -133683702 - L1M4 LINE L1 -4051 2164 1771 481 306 44 55 chr12 10102805 10103219 -133683236 - L1M4c LINE L1 -4416 2147 1596 489 307 5 48 chr12 10103478 10103667 -133682788 - L1ME3 LINE L1 0 6162 5982 374 277 215 30 chr12 10104302 10104674 -133681781 + L3 LINE CR1 586 1026 -551 258 375 42 7 chr12 10104865 10105009 -133681446 + L3 LINE CR1 1192 1340 -237 1184 263 44 54 chr12 10107081 10107453 -133679002 - LTR51 LTR ERV1 -47 624 255 2509 62 0 0 chr12 10107453 10107760 -133678695 + AluY SINE Alu 1 307 -4 1184 263 44 54 chr12 10107760 10107794 -133678661 - LTR51 LTR ERV1 -416 255 222 432 225 22 124 chr12 10108309 10108487 -133677968 + LTR49-int LTR ERV1 2278 2437 -3894 31 0 0 0 chr12 10108493 10108524 -133677931 + AT_rich Low_complexity Low_complexity 1 31 0 731 0 0 0 chr12 10108524 10108608 -133677847 - L1PA3 LINE L1 -4 6151 6068 776 178 19 13 chr12 10108690 10108847 -133677608 - FRAM SINE Alu -25 151 1 2178 242 87 73 chr12 10108936 10110156 -133676299 + L1M2 LINE L1 3 1239 -5610 1698 138 68 31 chr12 10110159 10110513 -133675942 + L1MA4A LINE L1 5937 6303 0 695 359 41 38 chr12 10111021 10111186 -133675269 - ERVL LTR ERVL -570 5194 5031 2217 110 7 0 chr12 10111186 10111486 -133674969 - AluSp SINE Alu -11 302 1 695 359 41 38 chr12 10111486 10111905 -133674550 - ERVL LTR ERVL -733 5031 4608 1875 71 37 37 chr12 10112095 10112363 -133674092 - AluY SINE Alu -4 307 40 200 206 0 0 chr12 10113368 10113402 -133673053 + (CAT)n Simple_repeat Simple_repeat 2 35 0 700 328 54 8 chr12 10113770 10114029 -133672426 - ERVL LTR ERVL -1176 4588 4318 8381 244 32 25 chr12 10114190 10117929 -133668526 + L1PA13 LINE L1 12 2971 -4610 14267 195 18 32 chr12 10117938 10121249 -133665206 + L1PA13 LINE L1 3524 6789 -795 1240 116 0 0 chr12 10121486 10121667 -133664788 - L1PA13 LINE L1 -5 6158 5978 4837 111 23 3 chr12 10121667 10122404 -133664051 + L1PA13 LINE L1 6847 7598 -3 2315 98 0 3 chr12 10123454 10123750 -133662705 - AluSq SINE Alu -18 295 1 253 304 9 9 chr12 10124460 10124572 -133661883 - L1MC4a LINE L1 -1288 6520 6409 1645 174 3 23 chr12 10124840 10125145 -133661310 + AluJo SINE Alu 1 299 -13 225 198 11 55 chr12 10125455 10125546 -133660909 + T-rich Low_complexity Low_complexity 4 90 0 380 257 148 27 chr12 10125673 10126203 -133660252 - L1M4 LINE L1 -1882 4264 3661 675 84 0 0 chr12 10126329 10126424 -133660031 - AluSg/x SINE Alu -1 311 217 26 30 0 0 chr12 10126501 10126534 -133659921 + AT_rich Low_complexity Low_complexity 1 33 0 413 65 0 16 chr12 10128013 10128075 -133658380 + (TG)n Simple_repeat Simple_repeat 1 61 0 359 276 61 0 chr12 10128398 10128496 -133657959 + L2 LINE L2 3210 3313 0 204 258 0 32 chr12 10128987 10129049 -133657406 - L2 LINE L2 -64 3208 3149 22 56 0 0 chr12 10129253 10129289 -133657166 + AT_rich Low_complexity Low_complexity 1 36 0 2945 76 2 19 chr12 10129289 10129708 -133656747 - LTR7 LTR ERV1 -38 412 1 13097 84 5 11 chr12 10129709 10131552 -133654903 - HERVH LTR ERV1 -1 7712 5881 2555 71 3 0 chr12 10131551 10131890 -133654565 + HERVH LTR ERV1 5526 5865 -1848 * 1384 157 137 26 chr12 10132339 10132683 -133653772 - L1MB5 LINE L1 -10 6164 5783 340 274 0 21 chr12 10132694 10132789 -133653666 - L1MC4 LINE L1 -1336 6706 6614 1153 189 0 27 chr12 10132819 10133041 -133653414 - L1M4 LINE L1 -5827 715 500 261 262 48 24 chr12 10134199 10134283 -133652172 + HERVL74 LTR ERVL 1821 1906 -3779 595 210 24 16 chr12 10134297 10134421 -133652034 + MLT1A2 LTR MaLR 1 125 -249 1116 225 92 23 chr12 10134421 10134767 -133651688 - MLT1A2 LTR MaLR -1 373 4 228 234 0 0 chr12 10134770 10134817 -133651638 - MLT1A2-int LTR MaLR 0 1735 1689 3833 184 64 21 chr12 10134845 10135723 -133650732 + L1MB7 LINE L1 5239 6153 -31 228 73 0 24 chr12 10136067 10136108 -133650347 - L1PA13 LINE L1 -725 5436 5397 5065 89 14 18 chr12 10136108 10136842 -133649613 + L1PA13 LINE L1 5430 6160 -3 484 210 30 0 chr12 10137396 10137496 -133648959 - MER96B DNA MER1_type? -312 105 3 37 0 0 0 chr12 10138259 10138296 -133648159 + AT_rich Low_complexity Low_complexity 1 37 0 1738 241 115 2 chr12 10138333 10138785 -133647670 + MLT1D LTR MaLR 3 505 0 23 54 0 0 chr12 10139261 10139298 -133647157 + AT_rich Low_complexity Low_complexity 1 37 0 191 339 74 25 chr12 10139366 10139487 -133646968 - MIR SINE MIR -44 218 92 25315 112 14 90 chr12 10140548 10142705 -133643750 - L1P LINE L1 -1660 4486 2898 198 0 0 0 chr12 10142705 10142727 -133643728 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 25315 112 14 90 chr12 10142727 10145411 -133641044 - L1P LINE L1 -3248 2898 12 1759 170 50 0 chr12 10145423 10145706 -133640749 - AluJb SINE Alu -15 297 1 1292 148 24 77 chr12 10145716 10146011 -133640444 + MER67C LTR ERV1 40 343 -246 2050 28 0 8 chr12 10146022 10146272 -133640183 - L1PA2 LINE L1 0 6155 5908 710 263 34 14 chr12 10146290 10146499 -133639956 - MER34 LTR ERV1 -294 248 36 1482 44 59 39 chr12 10146746 10146949 -133639506 - AluY SINE Alu -104 207 1 2631 153 9 19 chr12 10147571 10148036 -133638419 - MER65C LTR ERV1 -1 460 1 275 152 0 0 chr12 10148045 10148091 -133638364 + MER67C LTR ERV1 356 401 -309 325 309 86 0 chr12 10148105 10148244 -133638211 + MER67D LTR ERV1 356 506 -8 286 257 157 14 chr12 10148272 10148412 -133638043 - L1MC4 LINE L1 -969 7073 6914 410 66 33 0 chr12 10148426 10148487 -133637968 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 540 252 50 64 chr12 10149025 10149243 -133637212 + MER20 DNA MER1_type 1 215 -4 193 377 44 26 chr12 10149958 10150072 -133636383 + MIR3 SINE MIR 53 168 -40 230 365 40 24 chr12 10152265 10152391 -133634064 - L2 LINE L2 -4 3268 3141 221 317 35 56 chr12 10152598 10152740 -133633715 - L3 LINE CR1 -294 1283 1145 340 257 69 20 chr12 10153461 10153562 -133632893 + MLT2E LTR ERVL 54 159 -469 281 239 0 11 chr12 10154042 10154134 -133632321 + (TA)n Simple_repeat Simple_repeat 2 92 0 413 264 74 63 chr12 10154485 10154769 -133631686 + L1ME3A LINE L1 2964 3250 -2896 1566 295 108 39 chr12 10154821 10157035 -133629420 + L1ME3A LINE L1 3389 5759 -411 999 211 84 39 chr12 10157075 10157383 -133629072 + MER58B DNA MER1_type 16 337 -4 288 270 18 36 chr12 10157398 10157509 -133628946 + L1ME3A LINE L1 5816 5924 -246 328 274 0 9 chr12 10157552 10157665 -133628790 + L1ME3A LINE L1 5912 6023 -147 3868 196 70 21 chr12 10157973 10158776 -133627679 + L1M3f LINE L1 1 842 -4486 12154 108 29 2 chr12 10158777 10159412 -133627043 + L1PA7 LINE L1 3515 4132 -2022 180 0 0 0 chr12 10159412 10159432 -133627023 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 12154 108 29 2 chr12 10159432 10161423 -133625032 + L1PA7 LINE L1 4132 6153 -1 362 216 43 74 chr12 10163106 10163268 -133623187 + L1MC5 LINE L1 7370 7526 -435 2479 134 8 0 chr12 10163426 10163798 -133622657 - THE1C LTR MaLR 0 375 1 309 224 59 0 chr12 10164087 10164172 -133622283 - L1MC2 LINE L1 -9 6335 6246 838 223 67 42 chr12 10164176 10164953 -133621502 + L1MC1 LINE L1 1455 2211 -4413 1406 236 7 10 chr12 10164953 10165263 -133621192 + AluJo SINE Alu 1 309 -3 838 223 67 42 chr12 10165263 10165771 -133620684 + L1MC1 LINE L1 2211 2705 -3919 1634 210 7 0 chr12 10165771 10166081 -133620374 + AluSx SINE Alu 1 312 0 838 223 67 42 chr12 10166081 10168300 -133618155 + L1MC1 LINE L1 2705 5272 -1352 2400 63 3 13 chr12 10168300 10168602 -133617853 + AluY SINE Alu 1 299 -12 838 223 67 42 chr12 10168602 10169236 -133617219 + L1MC1 LINE L1 5272 5889 -735 7892 186 38 52 chr12 10169249 10171348 -133615107 + L1P3 LINE L1 10 2091 -4370 624 255 36 16 chr12 10171344 10171432 -133615023 + L1MC1 LINE L1 6416 6501 -112 * 1756 153 131 28 chr12 10171432 10171791 -133614664 + MSTD LTR MaLR 1 396 0 624 255 36 16 chr12 10171791 10171894 -133614561 + L1MC1 LINE L1 6501 6611 -2 2443 44 10 0 chr12 10172274 10172568 -133613887 + AluY SINE Alu 1 297 -14 663 230 79 62 chr12 10172980 10173284 -133613171 + L1MDb LINE L1 783 1091 -5318 311 236 112 77 chr12 10174749 10174982 -133611473 - L1ME3A LINE L1 -6 6164 5924 300 303 133 12 chr12 10175894 10176059 -133610396 - MIR SINE MIR -15 247 63 1986 134 39 0 chr12 10176508 10176791 -133609664 + AluSx SINE Alu 1 294 -18 1663 95 0 0 chr12 10176797 10177018 -133609437 + AluY SINE Alu 84 304 -7 22 0 0 0 chr12 10177018 10177040 -133609415 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr12 10177405 10177456 -133608999 + AT_rich Low_complexity Low_complexity 1 51 0 2276 107 7 0 chr12 10177794 10178103 -133608352 + AluSx SINE Alu 1 311 -1 2032 200 86 28 chr12 10178177 10178607 -133607848 + MLT1D LTR MaLR 1 461 -44 1976 181 14 14 chr12 10178607 10178972 -133607483 - MLT1A1 LTR MaLR 0 365 1 2032 200 86 28 chr12 10178972 10179006 -133607449 + MLT1D LTR MaLR 461 492 -13 192 279 27 72 chr12 10179012 10179123 -133607332 + MIR SINE MIR 95 200 -62 615 305 15 0 chr12 10179544 10179718 -133606737 + MER45A DNA AcHobo 1 178 0 2368 242 54 6 chr12 10179774 10180407 -133606048 - L1MD1 LINE L1 -1 6241 5579 1604 306 30 64 chr12 10180412 10181267 -133605188 + L1M3d LINE L1 15 840 -5051 2028 166 11 16 chr12 10181365 10181732 -133604723 - LTR45B LTR ERV1 -101 388 24 2658 156 11 13 chr12 10181733 10182207 -133604248 + L1PA16 LINE L1 5693 6165 -1 3037 180 14 2 chr12 10182422 10182972 -133603483 + MER41D LTR ERV1 1 557 0 263 232 22 0 chr12 10182997 10183078 -133603377 - LTR45B-int LTR ERV1 -2 8118 7007 1654 204 68 0 chr12 10183214 10183537 -133602918 - MER101 LTR ERV1 -106 368 24 2009 141 0 26 chr12 10184089 10184393 -133602062 + AluSx SINE Alu 1 296 -16 479 286 0 14 chr12 10184573 10184720 -133601735 - MER31-int LTR ERV1 -532 4404 4260 267 239 60 0 chr12 10184741 10184808 -133601647 - MER31-int LTR ERV1 -951 5380 5310 * 319 176 14 54 chr12 10184806 10184880 -133601575 - MER31-int LTR ERV1 -980 3956 3886 1977 149 3 0 chr12 10184892 10185188 -133601267 - AluSx SINE Alu -15 297 1 965 204 184 20 chr12 10185188 10185541 -133600914 - MER31-int LTR ERV1 -1126 3810 3400 * 1136 190 82 116 chr12 10185536 10186172 -133600283 - MER31-int LTR ERV1 -1765 4566 3953 388 125 16 0 chr12 10186151 10186215 -133600240 - MER31-int LTR ERV1 -2366 2570 2506 * 350 109 0 0 chr12 10186581 10186636 -133599819 - L1PA16 LINE L1 -5 6161 6107 655 165 0 0 chr12 10186636 10186745 -133599710 - THE1-int LTR MaLR -469 1111 1003 210 370 110 7 chr12 10188216 10188362 -133598093 + MIR SINE MIR 94 254 -8 275 232 12 37 chr12 10188866 10188948 -133597507 + Charlie2 DNA MER1_type 47 126 -2736 713 278 155 23 chr12 10189239 10189934 -133596521 + L2 LINE L2 2388 3303 -10 3848 253 45 17 chr12 10190419 10192042 -133594413 + L1ME1 LINE L1 3840 5508 -751 2312 120 62 10 chr12 10192049 10192449 -133594006 + MSTA LTR MaLR 1 421 -7 950 261 16 4 chr12 10192454 10192711 -133593744 + L1ME1 LINE L1 5512 5771 -395 267 290 47 0 chr12 10192743 10192850 -133593605 + MER92A LTR ERV1 2 113 -299 2176 95 14 14 chr12 10192971 10193267 -133593188 - AluY SINE Alu -15 296 1 415 157 72 0 chr12 10193274 10193357 -133593098 + MER92A LTR ERV1 324 412 0 1055 228 48 10 chr12 10193359 10193671 -133592784 + L1ME1 LINE L1 5828 6151 -15 1661 169 50 33 chr12 10194044 10194381 -133592074 + MER61A LTR ERV1 1 343 0 859 147 42 0 chr12 10194820 10194963 -133591492 + LTR8 LTR ERV1 543 691 0 1095 167 98 20 chr12 10196057 10196111 -133590344 + L1MC2 LINE L1 6015 6063 -281 4550 99 67 40 chr12 10196111 10196869 -133589586 + LTR19C LTR ERV1 1 779 0 1095 167 98 20 chr12 10196869 10197120 -133589335 + L1MC2 LINE L1 6063 6344 0 307 138 15 15 chr12 10197206 10197271 -133589184 + (TA)n Simple_repeat Simple_repeat 1 65 0 601 200 0 62 chr12 10198236 10198319 -133588136 + MER5C DNA MER1_type 3 77 -247 2157 114 54 20 chr12 10198319 10198669 -133587786 - THE1B LTR MaLR -2 362 1 601 200 0 62 chr12 10198669 10198715 -133587740 + MER5C DNA MER1_type 77 124 -200 24 0 0 0 chr12 10199225 10199249 -133587206 + AT_rich Low_complexity Low_complexity 1 24 0 1308 167 8 0 chr12 10199336 10199581 -133586874 - L1MA5A LINE L1 0 6297 6051 1172 125 21 0 chr12 10199598 10199790 -133586665 - THE1-int LTR MaLR -1075 505 310 1690 131 49 16 chr12 10202124 10202430 -133584025 + MER61A-int LTR ERV1 525 840 -4377 24643 98 26 19 chr12 10202430 10204634 -133581821 + MER61A-int LTR ERV1 958 3300 -1917 2346 100 10 0 chr12 10204634 10204944 -133581511 + AluSp SINE Alu 1 313 0 24643 98 26 19 chr12 10204944 10206875 -133579580 + MER61A-int LTR ERV1 3300 5217 0 1230 221 40 13 chr12 10206875 10207174 -133579281 + MER61A LTR ERV1 1 307 -36 1819 189 13 2 chr12 10207191 10207588 -133578867 - L1 LINE L1 -1695 4451 4051 566 277 36 108 chr12 10207610 10207971 -133578484 - L2 LINE L2 -337 2977 2643 212 331 140 15 chr12 10208006 10208142 -133578313 - L2 LINE L2 -1144 2170 2018 2078 207 8 47 chr12 10208339 10208870 -133577585 - MER67D LTR ERV1 -4 510 1 275 216 248 52 chr12 10209685 10209838 -133576617 - MER5A DNA MER1_type 0 189 7 1268 137 9 5 chr12 10209854 10210055 -133576400 - LTR8 LTR ERV1 0 691 490 1275 178 6 86 chr12 10210055 10210393 -133576062 + LTR9 LTR ERV1 1 311 -301 37724 73 11 3 chr12 10210404 10216495 -133569960 + L1PA5 LINE L1 5 6143 -11 22 0 0 0 chr12 10216500 10216522 -133569933 + AT_rich Low_complexity Low_complexity 1 22 0 236 238 206 75 chr12 10217043 10217203 -133569252 - MER5A DNA MER1_type -7 182 2 267 211 58 10 chr12 10217602 10217706 -133568749 + (TA)n Simple_repeat Simple_repeat 1 109 0 658 230 51 51 chr12 10218711 10219173 -133567282 + L1MB2 LINE L1 810 1547 -4766 792 260 42 16 chr12 10219250 10219558 -133566897 + L1MB2 LINE L1 2019 2334 -4050 564 198 0 0 chr12 10219565 10219666 -133566789 + U6 snRNA snRNA 1 101 -6 10333 220 44 24 chr12 10219709 10221203 -133565252 + L1MB2 LINE L1 2486 3948 -2456 1865 168 0 25 chr12 10221203 10221519 -133564936 + AluJo SINE Alu 5 312 0 10333 220 44 24 chr12 10221519 10222858 -133563597 + L1MB2 LINE L1 3948 5414 -990 2167 107 3 3 chr12 10222858 10223147 -133563308 + AluSx SINE Alu 1 289 -23 10333 220 44 24 chr12 10223147 10223418 -133563037 + L1MB2 LINE L1 5414 5678 -726 2739 173 85 113 chr12 10223418 10224333 -133562122 + L1MCa LINE L1 17 906 -5520 3466 163 15 70 chr12 10224333 10224567 -133561888 + L1MB2 LINE L1 5660 5905 -502 186 43 0 0 chr12 10224567 10224590 -133561865 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1025 145 6 0 chr12 10224599 10224778 -133561677 + GA-rich Low_complexity Low_complexity 1 180 0 3466 163 15 70 chr12 10224778 10224803 -133561652 + L1MB2 LINE L1 5913 5938 -469 985 173 64 134 chr12 10224803 10225191 -133561264 + MLT1A1 LTR MaLR 1 361 -4 3466 163 15 70 chr12 10225191 10225432 -133561023 + L1MB2 LINE L1 5938 6115 -292 2409 81 3 0 chr12 10225432 10225727 -133560728 + AluSx SINE Alu 1 296 -16 3466 163 15 70 chr12 10225727 10226004 -133560451 + L1MB2 LINE L1 6115 6406 -1 1540 152 105 84 chr12 10226778 10226914 -133559541 - MLT1B LTR MaLR 0 390 258 2146 102 17 7 chr12 10226914 10227209 -133559246 - AluSg SINE Alu 0 310 13 1540 152 105 84 chr12 10227209 10227454 -133559001 - MLT1B LTR MaLR -132 258 1 247 119 0 0 chr12 10228645 10228687 -133557768 - L1P LINE L1 -1435 4711 4670 33142 76 10 3 chr12 10228687 10233365 -133553090 - L1P LINE L1 -1354 4792 83 437 261 92 8 chr12 10234479 10234609 -133551846 + MIR SINE MIR 47 187 -75 515 330 107 25 chr12 10237877 10238204 -133548251 + L2 LINE L2 2914 3267 -5 262 303 173 45 chr12 10239056 10239409 -133547046 - L2 LINE L2 -2 3270 2873 230 274 16 0 chr12 10239679 10239741 -133546714 + L2 LINE L2 3186 3248 -24 282 317 50 37 chr12 10239973 10240134 -133546321 + MIR SINE MIR 21 183 -79 249 57 0 0 chr12 10242131 10242166 -133544289 + (T)n Simple_repeat Simple_repeat 1 35 0 668 180 0 23 chr12 10242195 10242323 -133544132 - FLAM_A SINE Alu -10 132 8 1457 219 22 70 chr12 10242377 10242779 -133543676 + MLT1B LTR MaLR 8 390 0 298 284 87 83 chr12 10242998 10243216 -133543239 + MIR SINE MIR 21 239 -23 23 0 0 0 chr12 10243253 10243276 -133543179 + AT_rich Low_complexity Low_complexity 1 23 0 1509 188 11 11 chr12 10244439 10244726 -133541729 + AluJo SINE Alu 1 287 -25 324 286 208 38 chr12 10244726 10245351 -133541104 + HAL1 LINE L1 10 740 -1767 278 320 0 0 chr12 10245381 10245456 -133540999 + HAL1 LINE L1 802 876 -1631 469 122 100 22 chr12 10245738 10245828 -133540627 + FLAM_A SINE Alu 30 126 -16 935 220 74 68 chr12 10245828 10246165 -133540290 + MLT1A2 LTR MaLR 36 374 0 340 208 109 126 chr12 10246186 10246369 -133540086 + HAL1 LINE L1 1949 2128 -379 1987 81 4 0 chr12 10246502 10246763 -133539692 + AluY SINE Alu 1 262 -49 2385 52 3 10 chr12 10247600 10247907 -133538548 - AluY SINE Alu -6 305 1 482 231 202 35 chr12 10248755 10248958 -133537497 - MIR SINE MIR -5 257 21 507 237 173 109 chr12 10249415 10249773 -133536682 + L2 LINE L2 2931 3311 -2 497 235 61 10 chr12 10249903 10250050 -133536405 - MIR SINE MIR -66 142 30 566 180 9 18 chr12 10250522 10250633 -133535822 + MLT1A2 LTR MaLR 265 374 0 291 260 57 73 chr12 10252083 10252206 -133534249 + MIR3 SINE MIR 58 178 -30 366 158 13 26 chr12 10252530 10252606 -133533849 + L1M LINE L1 5315 5389 -785 7749 131 143 40 chr12 10252806 10254345 -133532110 - pTR5 LTR ERV1 0 2438 742 260 351 94 25 chr12 10254345 10254621 -133531834 - L2 LINE L2 -466 2848 2554 2053 42 0 27 chr12 10255094 10255354 -133531101 + AluY SINE Alu 51 303 -8 641 291 22 43 chr12 10255354 10255584 -133530871 + MIR SINE MIR 38 262 0 833 250 27 27 chr12 10255650 10255870 -133530585 - MSTB1 LTR MaLR -212 220 1 4469 168 44 58 chr12 10256306 10256908 -133529547 + L1MB2 LINE L1 4929 5538 -633 324 0 0 0 chr12 10256908 10256944 -133529511 + (CA)n Simple_repeat Simple_repeat 1 36 0 1703 179 0 13 chr12 10256944 10257252 -133529203 + AluJo SINE Alu 2 305 -7 4469 168 44 58 chr12 10257252 10257630 -133528825 + L1MB2 LINE L1 5537 5872 -299 1905 172 52 22 chr12 10257630 10257664 -133528791 - MLT2D LTR ERVL 0 414 382 291 28 0 0 chr12 10257664 10257700 -133528755 + (TG)n Simple_repeat Simple_repeat 2 37 0 1905 172 52 22 chr12 10257700 10258067 -133528388 - MLT2D LTR ERVL -32 382 1 4469 168 44 58 chr12 10258067 10258363 -133528092 + L1MB2 LINE L1 5872 6171 0 4903 145 72 8 chr12 10259033 10259345 -133527110 + Tigger3b DNA MER2_type 1 292 -2736 1386 210 13 23 chr12 10259345 10259645 -133526810 - AluJo SINE Alu -15 297 1 4903 145 72 8 chr12 10259645 10260203 -133526252 + Tigger3b DNA MER2_type 292 927 -304 3860 170 73 82 chr12 10260210 10261144 -133525311 - MER21A LTR ERV1 -6 925 1 789 180 43 6 chr12 10261144 10261297 -133525158 + Tigger3b DNA MER2_type 925 1083 -149 1376 160 30 122 chr12 10261299 10261797 -133524658 - MER4A LTR ERV1 0 465 157 1641 328 54 34 chr12 10261815 10262126 -133524329 - MER87-int LTR ERV1 -3756 3366 3063 1568 197 0 16 chr12 10262126 10262431 -133524024 + AluJo SINE Alu 1 300 -12 1641 328 54 34 chr12 10262431 10263283 -133523172 - MER87-int LTR ERV1 -4059 3063 2208 1504 302 73 65 chr12 10263359 10264474 -133521981 - MER87-int LTR ERV1 -5061 2061 937 338 293 108 24 chr12 10264759 10264971 -133521484 - MER87-int LTR ERV1 -6355 767 538 2115 60 4 7 chr12 10265272 10265553 -133520902 + AluY SINE Alu 29 308 -3 390 258 62 94 chr12 10265558 10265802 -133520653 - MER87-int LTR ERV1 -1497 289 54 279 305 43 28 chr12 10265929 10266070 -133520385 - MER87 LTR ERV1 0 541 399 1278 226 56 10 chr12 10266182 10266338 -133520117 - AluJo SINE Alu 0 302 155 225 0 0 0 chr12 10266338 10266363 -133520092 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2476 38 0 0 chr12 10266363 10266652 -133519803 - AluY SINE Alu -22 289 1 185 0 0 39 chr12 10266654 10266680 -133519775 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1278 226 56 10 chr12 10266680 10266807 -133519648 - AluJo SINE Alu -147 155 2 2370 63 0 10 chr12 10267093 10267395 -133519060 - AluY SINE Alu -12 299 1 190 206 95 32 chr12 10267607 10267670 -133518785 - MIR SINE MIR -25 237 171 962 305 32 17 chr12 10267732 10268080 -133518375 - MLT1J LTR MaLR -78 433 81 2098 199 38 52 chr12 10268223 10268725 -133517730 - LTR42 LTR ERVL 0 495 1 382 187 13 0 chr12 10269390 10269465 -133516990 - MER4C LTR ERV1 0 465 390 229 264 0 0 chr12 10269721 10269774 -133516681 + MIR SINE MIR 204 256 -6 337 313 55 43 chr12 10270669 10270832 -133515623 - MIR SINE MIR -47 215 51 309 330 0 0 chr12 10270943 10271031 -133515424 + (TG)n Simple_repeat Simple_repeat 1 88 0 270 0 0 0 chr12 10271413 10271443 -133515012 + (CA)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr12 10271499 10271534 -133514921 + (CA)n Simple_repeat Simple_repeat 1 35 0 382 247 45 28 chr12 10272026 10272169 -133514286 + MLT1C LTR MaLR 28 180 -287 281 100 20 0 chr12 10272169 10272219 -133514236 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 153 153 46 chr12 10273151 10273282 -133513173 - L1ME4a LINE L1 -11 6110 5966 210 37 0 0 chr12 10273290 10273317 -133513138 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 820 213 0 0 chr12 10273449 10273599 -133512856 - FRAM SINE Alu -31 145 1 575 335 111 12 chr12 10273683 10274344 -133512111 - L2 LINE L2 -4 3309 2557 359 355 89 0 chr12 10274977 10275180 -133511275 - MIR SINE MIR -29 233 13 511 284 58 36 chr12 10275714 10275939 -133510516 + L2 LINE L2 2732 2961 -353 2561 209 25 9 chr12 10275945 10276505 -133509950 + LTR24B LTR ERV1 1 569 -7 609 284 78 19 chr12 10276507 10276775 -133509680 + L2 LINE L2 3012 3295 -18 265 340 21 32 chr12 10277003 10277097 -133509358 + MIR SINE MIR 21 113 -95 577 225 60 28 chr12 10277299 10277481 -133508974 + L1MC5 LINE L1 7711 7898 -63 2344 124 0 3 chr12 10277506 10277868 -133508587 + L1PA13 LINE L1 5802 6162 -1 432 275 62 27 chr12 10277871 10278204 -133508251 + L1MEc LINE L1 345 1716 -770 1981 118 61 28 chr12 10278251 10278614 -133507841 + THE1C LTR MaLR 1 375 0 298 294 23 40 chr12 10278767 10278836 -133507619 + L1MC/D LINE L1 5629 5698 -2110 1218 111 0 0 chr12 10278836 10279007 -133507448 + L1PA10 LINE L1 5997 6167 -1 298 294 23 40 chr12 10279007 10279114 -133507341 + L1MC/D LINE L1 5698 5802 -2006 7387 161 22 27 chr12 10279197 10279339 -133507116 + L1PB1 LINE L1 3705 3846 -2305 1633 167 3 11 chr12 10279339 10279621 -133506834 + AluSx SINE Alu 1 280 -32 7387 161 22 27 chr12 10279621 10281941 -133504514 + L1PB1 LINE L1 3846 6145 -6 22 0 0 0 chr12 10281942 10281964 -133504491 + AT_rich Low_complexity Low_complexity 1 22 0 249 271 14 29 chr12 10282186 10282256 -133504199 + L2 LINE L2 3154 3222 -50 1569 158 30 3 chr12 10282731 10283028 -133503427 + AluJb SINE Alu 1 305 -7 321 211 89 106 chr12 10283217 10283454 -133503001 + L1MEd LINE L1 869 1101 -5018 212 349 0 24 chr12 10284240 10284323 -133502132 - MER5A DNA MER1_type -50 139 59 3153 77 2 0 chr12 10284778 10285194 -133501261 + L1PA5 LINE L1 5738 6154 0 180 111 0 0 chr12 10285211 10285238 -133501217 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 277 368 108 40 chr12 10286499 10286819 -133499636 - L2 LINE L2 -424 2890 2540 2335 83 0 13 chr12 10286819 10287119 -133499336 - AluSg SINE Alu -14 296 1 277 368 108 40 chr12 10287119 10287170 -133499285 - L2 LINE L2 -774 2540 2494 260 340 93 0 chr12 10287192 10287289 -133499166 - L2 LINE L2 -284 3029 2924 * 688 274 66 68 chr12 10287260 10287554 -133498901 - L2 LINE L2 -756 2558 2264 1881 161 13 10 chr12 10287554 10287865 -133498590 + AluJb SINE Alu 1 312 0 688 274 66 68 chr12 10287865 10287950 -133498505 - L2 LINE L2 -1050 2264 2180 233 213 21 0 chr12 10289442 10289489 -133496966 + CT-rich Low_complexity Low_complexity 2 49 0 1619 184 14 0 chr12 10289809 10290092 -133496363 - AluJo SINE Alu -25 287 1 793 298 48 42 chr12 10290188 10290621 -133495834 - LTR16A1 LTR ERVL 0 457 22 2346 76 0 13 chr12 10290842 10291143 -133495312 + AluY SINE Alu 1 297 -14 184 326 174 22 chr12 10293795 10293979 -133492476 - L2 LINE L2 -1244 2070 1859 22 35 0 0 chr12 10294215 10294244 -133492211 + AT_rich Low_complexity Low_complexity 1 29 0 251 308 154 45 chr12 10295364 10295520 -133490935 - MIR SINE MIR -77 185 13 36 70 0 0 chr12 10295608 10295679 -133490776 + AT_rich Low_complexity Low_complexity 1 71 0 755 153 175 34 chr12 10296025 10296202 -133490253 - MER3 DNA MER1_type -1 208 7 23 0 0 0 chr12 10297228 10297251 -133489204 + AT_rich Low_complexity Low_complexity 1 23 0 7463 59 1 3 chr12 10297415 10299124 -133487331 - L1PA5 LINE L1 -13 6141 4418 6982 60 2 0 chr12 10299125 10300549 -133485906 + L1PA7 LINE L1 4728 6153 -1 36 23 0 0 chr12 10300622 10300665 -133485790 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 10300885 10300907 -133485548 + AT_rich Low_complexity Low_complexity 1 22 0 669 222 70 35 chr12 10302062 10302233 -133484222 - MIR SINE MIR 0 262 86 2006 111 11 0 chr12 10302279 10302558 -133483897 - AluSx SINE Alu -26 286 5 222 339 57 8 chr12 10302639 10302763 -133483692 - L2 LINE L2 -4 3309 3180 1171 81 6 6 chr12 10302914 10303074 -133483381 + L1PA15 LINE L1 5997 6156 -9 287 333 14 0 chr12 10303606 10303675 -133482780 - MIR SINE MIR -183 79 10 24 0 0 0 chr12 10303880 10303904 -133482551 + AT_rich Low_complexity Low_complexity 1 24 0 2092 95 14 10 chr12 10304691 10304987 -133481468 - AluSq SINE Alu -16 297 1 1927 155 3 10 chr12 10305315 10305618 -133480837 + AluJo SINE Alu 1 301 -11 448 155 0 21 chr12 10305635 10305732 -133480723 + GA-rich Low_complexity Low_complexity 4 98 0 201 297 0 40 chr12 10305840 10305941 -133480514 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 206 225 0 0 chr12 10306564 10306604 -133479851 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 420 225 23 31 chr12 10306661 10306790 -133479665 - MER94 DNA DNA 0 134 7 233 191 96 85 chr12 10306836 10306930 -133479525 - L2 LINE L2 -94 3219 3125 445 252 26 0 chr12 10306964 10307079 -133479376 + MER58 DNA MER1_type 1 118 -97 213 311 0 0 chr12 10307137 10307182 -133479273 - L2 LINE L2 -256 3057 3013 263 140 120 0 chr12 10307237 10307287 -133479168 - MER5A DNA MER1_type 0 189 134 22 56 0 0 chr12 10307500 10307536 -133478919 + AT_rich Low_complexity Low_complexity 1 36 0 306 275 48 24 chr12 10308083 10308250 -133478205 - L1M4 LINE L1 -2947 3199 3029 253 138 52 0 chr12 10308298 10308356 -133478099 - L1MB2 LINE L1 0 6171 6111 189 0 0 0 chr12 10308384 10308405 -133478050 + (TTTTTA)n Simple_repeat Simple_repeat 1 21 0 190 314 186 0 chr12 10308494 10308580 -133477875 - MIR SINE MIR 0 262 161 232 209 30 45 chr12 10308612 10308679 -133477776 + MER92C LTR ERV1 280 345 -209 483 272 16 52 chr12 10312142 10312333 -133474122 - L1MC5 LINE L1 -589 7372 7189 809 192 48 6 chr12 10312345 10312512 -133473943 - MER20 DNA MER1_type -5 214 41 546 57 0 0 chr12 10312745 10312815 -133473640 + (TG)n Simple_repeat Simple_repeat 2 71 0 249 283 183 22 chr12 10316626 10316806 -133469649 + MIR SINE MIR 48 256 -6 222 328 0 0 chr12 10316909 10316967 -133469488 - L2 LINE L2 0 3272 3215 337 242 0 0 chr12 10317110 10317176 -133469279 + MER5A DNA MER1_type 1 66 -123 2316 86 0 10 chr12 10317189 10317492 -133468963 + AluY SINE Alu 1 300 -11 214 200 0 0 chr12 10317564 10317604 -133468851 + (TA)n Simple_repeat Simple_repeat 2 41 0 2193 60 0 11 chr12 10318260 10318542 -133467913 - AluY SINE Alu -11 300 22 362 294 32 81 chr12 10318542 10318790 -133467665 - HAL1 LINE L1 -2121 386 151 391 356 22 46 chr12 10318795 10319163 -133467292 + L2 LINE L2 2615 2973 -341 206 219 31 47 chr12 10319452 10319516 -133466939 + MIR SINE MIR 74 136 -126 258 318 34 45 chr12 10321916 10322095 -133464360 - MIR SINE MIR 0 262 86 263 135 16 95 chr12 10322774 10322900 -133463555 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 36 40 0 0 chr12 10322979 10323029 -133463426 + AT_rich Low_complexity Low_complexity 1 50 0 272 289 48 29 chr12 10323746 10323850 -133462605 - L2 LINE L2 -37 3276 3171 2152 165 71 13 chr12 10323875 10323931 -133462524 - MSTA LTR MaLR -12 416 365 2217 125 0 3 chr12 10323931 10324242 -133462213 + AluSq SINE Alu 1 310 -3 2152 165 71 13 chr12 10324242 10324578 -133461877 - MSTA LTR MaLR -63 365 1 748 319 39 0 chr12 10324609 10324838 -133461617 - MIR SINE MIR -2 260 23 184 0 97 0 chr12 10324926 10324957 -133461498 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 42748 32 23 1 chr12 10324957 10330969 -133455486 - L1PA3 LINE L1 -10 6145 2 317 185 7 206 chr12 10331216 10331362 -133455093 - MER105 DNA DNA -86 118 2 448 302 37 26 chr12 10332031 10332220 -133454235 - LTR67 LTR ERVL -338 219 29 21 0 0 0 chr12 10334124 10334145 -133452310 + AT_rich Low_complexity Low_complexity 1 21 0 863 199 30 102 chr12 10334156 10334341 -133452114 + L1MA6 LINE L1 6053 6250 -50 225 0 0 0 chr12 10334341 10334366 -133452089 + (TG)n Simple_repeat Simple_repeat 2 26 0 863 199 30 102 chr12 10334366 10334394 -133452061 + L1MA6 LINE L1 6250 6248 -52 2074 140 0 7 chr12 10334394 10334694 -133451761 - AluSx SINE Alu -14 298 1 863 199 30 102 chr12 10334694 10334745 -133451710 + L1MA6 LINE L1 6247 6300 0 2273 108 0 0 chr12 10335449 10335755 -133450700 + AluSg SINE Alu 1 306 -4 262 278 78 53 chr12 10336399 10336427 -133450028 - L1ME LINE L1 -311 5810 5784 27 0 0 0 chr12 10336427 10336454 -133450001 + AT_rich Low_complexity Low_complexity 1 27 0 262 278 78 53 chr12 10336454 10336680 -133449775 - L1ME LINE L1 -337 5784 5523 24 32 0 0 chr12 10336847 10336878 -133449577 + AT_rich Low_complexity Low_complexity 1 31 0 2140 124 0 6 chr12 10336919 10337233 -133449222 + AluSx SINE Alu 1 312 0 558 348 6 11 chr12 10337277 10337458 -133448997 - MIR SINE MIR -78 184 5 21 0 0 0 chr12 10338563 10338584 -133447871 + AT_rich Low_complexity Low_complexity 1 21 0 254 279 123 13 chr12 10338745 10338840 -133447615 + MIR SINE MIR 7 112 -96 21 0 0 0 chr12 10339282 10339303 -133447152 + AT_rich Low_complexity Low_complexity 1 21 0 1692 168 41 0 chr12 10340537 10340829 -133445626 + AluJb SINE Alu 1 304 -8 469 313 54 75 chr12 10340879 10341211 -133445244 - L1MC/D LINE L1 -2163 5645 5321 534 303 69 6 chr12 10342006 10342181 -133444274 + MIR SINE MIR 16 201 -61 3742 106 9 110 chr12 10342416 10342700 -133443755 - MER4A LTR ERV1 0 664 353 2184 127 0 0 chr12 10342700 10343000 -133443455 + AluSx SINE Alu 1 300 -12 3742 106 9 110 chr12 10343000 10343453 -133443002 - MER4A LTR ERV1 -311 353 1 216 191 0 0 chr12 10344029 10344071 -133442384 + L2 LINE L2 3271 3312 -1 2345 80 3 26 chr12 10344077 10344389 -133442066 + AluSx SINE Alu 1 305 -7 25 65 0 0 chr12 10345344 10345390 -133441065 + AT_rich Low_complexity Low_complexity 1 46 0 2442 128 163 22 chr12 10346547 10347006 -133439449 - MER1A DNA MER1_type -5 524 1 259 249 54 108 chr12 10347016 10347201 -133439254 + MIR SINE MIR 5 179 -83 * 503 272 133 22 chr12 10347199 10347379 -133439076 - MIR SINE MIR -32 230 31 21 36 0 0 chr12 10347771 10347799 -133438656 + AT_rich Low_complexity Low_complexity 1 28 0 285 182 0 0 chr12 10347806 10347861 -133438594 + (TA)n Simple_repeat Simple_repeat 2 56 0 2031 44 0 0 chr12 10348016 10348265 -133438190 + L1PA3 LINE L1 5906 6154 -1 399 259 188 18 chr12 10349631 10349855 -133436600 - L1ME4a LINE L1 -2 6119 5858 1599 192 3 14 chr12 10350061 10350358 -133436097 + AluSx SINE Alu 1 294 -18 213 196 0 0 chr12 10350361 10350407 -133436048 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 231 36 0 0 chr12 10350409 10350437 -133436018 + (CA)n Simple_repeat Simple_repeat 2 29 0 355 172 62 130 chr12 10350744 10350873 -133435582 - L1MC4 LINE L1 0 8042 7929 381 43 0 0 chr12 10350873 10350920 -133435535 + (CA)n Simple_repeat Simple_repeat 2 48 0 355 172 62 130 chr12 10350920 10350982 -133435473 - L1MC4 LINE L1 -113 7929 7864 654 115 8 41 chr12 10350990 10351112 -133435343 + MER4C LTR ERV1 1 118 -347 657 308 62 47 chr12 10351113 10351577 -133434878 - L1M4 LINE L1 -2884 3262 2792 23 33 0 0 chr12 10352267 10352297 -133434158 + AT_rich Low_complexity Low_complexity 1 30 0 2472 60 0 3 chr12 10352351 10352649 -133433806 + AluY SINE Alu 1 297 -14 676 213 0 0 chr12 10352866 10352993 -133433462 + AluJb SINE Alu 175 301 -11 561 337 89 47 chr12 10353035 10353584 -133432871 - HAL1b LINE L1 -756 592 21 306 0 0 0 chr12 10355477 10355511 -133430944 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 244 32 32 chr12 10355519 10355642 -133430813 + MIR SINE MIR 139 261 -1 2015 154 11 8 chr12 10356229 10356586 -133429869 - Tigger3b DNA MER2_type 0 1231 874 3716 134 34 0 chr12 10356587 10357204 -133429251 - Tigger3b DNA MER2_type -593 638 1 213 65 0 0 chr12 10359471 10359502 -133426953 + (CAA)n Simple_repeat Simple_repeat 3 33 0 208 146 0 24 chr12 10363002 10363043 -133423412 + (TTG)n Simple_repeat Simple_repeat 3 42 0 26 0 0 0 chr12 10363594 10363620 -133422835 + AT_rich Low_complexity Low_complexity 1 26 0 254 309 115 14 chr12 10365730 10365869 -133420586 + MER5A DNA MER1_type 35 187 -2 2177 134 0 0 chr12 10367048 10367339 -133419116 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 10367364 10367392 -133419063 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 10367450 10367471 -133418984 + AT_rich Low_complexity Low_complexity 1 21 0 1547 159 90 56 chr12 10368024 10368401 -133418054 - MLT1B LTR MaLR 0 390 1 254 284 92 46 chr12 10368855 10368964 -133417491 - L2 LINE L2 -1 3312 3199 32 75 0 0 chr12 10369459 10369526 -133416929 + AT_rich Low_complexity Low_complexity 1 67 0 1339 209 118 41 chr12 10369781 10370420 -133416035 + SATR1 Satellite Satellite 1 688 -131 3885 99 3 8 chr12 10370431 10371028 -133415427 - HERVE LTR ERV1 -3967 3846 3253 1324 209 100 74 chr12 10371123 10371988 -133414467 + SATR1 Satellite Satellite 1 888 -131 3911 103 2 8 chr12 10371999 10372601 -133413854 - HERVE LTR ERV1 -3967 3846 3249 327 267 140 100 chr12 10373668 10374086 -133412369 + L1MDa LINE L1 527 962 -5578 1088 135 60 0 chr12 10374606 10374806 -133411649 - L1MA2 LINE L1 0 6304 6093 1985 146 3 29 chr12 10375590 10375906 -133410549 - AluSx SINE Alu 0 312 5 2640 192 41 10 chr12 10377348 10377957 -133408498 - L1MA9 LINE L1 -110 6202 5575 184 358 36 29 chr12 10378845 10378982 -133407473 + MIR SINE MIR 52 189 -73 324 286 0 19 chr12 10379378 10379483 -133406972 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 220 277 0 0 chr12 10379835 10379882 -133406573 + polypurine Low_complexity Low_complexity 2 48 0 1061 233 111 13 chr12 10380479 10380597 -133405858 + MLT1C LTR MaLR 53 158 -309 306 87 0 0 chr12 10380597 10380643 -133405812 + (CA)n Simple_repeat Simple_repeat 2 47 0 1061 233 111 13 chr12 10380643 10380902 -133405553 + MLT1C LTR MaLR 158 467 0 978 168 38 43 chr12 10381735 10381944 -133404511 + AluJo SINE Alu 104 311 -1 1465 238 28 16 chr12 10381945 10382382 -133404073 - L1M4 LINE L1 -1921 4225 3784 234 0 0 0 chr12 10382405 10382431 -133404024 + (CA)n Simple_repeat Simple_repeat 1 26 0 582 237 102 14 chr12 10382444 10382727 -133403728 + L1M4 LINE L1 4301 4608 -1538 18661 27 5 0 chr12 10382836 10385846 -133400609 + L1PA2 LINE L1 3131 6152 -3 955 217 45 25 chr12 10385910 10386154 -133400301 - MIR SINE MIR -2 260 12 4517 113 19 9 chr12 10386369 10387056 -133399399 + L1PA14 LINE L1 5468 6161 0 331 204 68 0 chr12 10387959 10388047 -133398408 - LTR50 LTR ERVL -1 794 701 2270 83 6 55 chr12 10389031 10389357 -133397098 - AluSq SINE Alu -1 312 3 689 284 114 8 chr12 10389831 10390067 -133396388 + MER110-int LTR ERV1 2298 2558 -2089 465 228 91 59 chr12 10390106 10390325 -133396130 + MER110-int LTR ERV1 2639 2864 -1783 612 266 72 14 chr12 10390757 10390979 -133395476 + MER106A DNA MER1_type 1 235 -1 234 372 0 12 chr12 10391906 10391992 -133394463 - L3 LINE CR1 -1 1576 1492 1372 218 119 73 chr12 10392074 10392569 -133393886 + MLT1H LTR MaLR 32 549 0 2167 97 10 7 chr12 10392943 10393242 -133393213 + AluSx SINE Alu 1 300 -12 392 301 16 8 chr12 10393528 10393651 -133392804 - L2 LINE L2 -6 3307 3184 319 236 154 32 chr12 10394260 10394383 -133392072 - L2 LINE L2 0 3313 3176 21 0 0 0 chr12 10394945 10394966 -133391489 + AT_rich Low_complexity Low_complexity 1 21 0 3730 170 54 49 chr12 10395572 10395701 -133390754 - L1MA9 LINE L1 -2 6310 6183 180 77 0 0 chr12 10395701 10395727 -133390728 + (TG)n Simple_repeat Simple_repeat 1 26 0 3730 170 54 49 chr12 10395727 10396436 -133390019 - L1MA9 LINE L1 -129 6183 5468 449 316 48 84 chr12 10397902 10398428 -133388027 - MER34 LTR ERV1 -35 507 1 192 227 0 23 chr12 10398468 10398512 -133387943 + MIR SINE MIR 110 152 -110 260 333 94 36 chr12 10399637 10399829 -133386626 + L2 LINE L2 2555 2757 -557 336 219 114 0 chr12 10401015 10401120 -133385335 + MER112 DNA MER1_type 136 252 -8 209 285 128 45 chr12 10402267 10402446 -133384009 - MIR3 SINE MIR -5 203 10 494 387 5 5 chr12 10402908 10403112 -133383343 + MIR SINE MIR 2 205 -57 8127 54 2 1 chr12 10403860 10404825 -133381630 + LTR5 LTR ERVK 1 966 -3 202 139 0 23 chr12 10405005 10405048 -133381407 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 251 200 25 75 chr12 10405379 10405459 -133380996 - L2 LINE L2 -1 3312 3237 28 71 0 0 chr12 10405994 10406050 -133380405 + AT_rich Low_complexity Low_complexity 1 56 0 2084 66 31 45 chr12 10406821 10407131 -133379324 - AluSp SINE Alu 0 306 1 484 282 46 17 chr12 10407228 10407402 -133379053 + MIR SINE MIR 84 262 0 341 335 84 17 chr12 10407654 10407833 -133378622 + L2 LINE L2 2699 2889 -425 800 268 84 86 chr12 10407887 10408235 -133378220 + L2 LINE L2 2849 3197 -116 4637 61 2 0 chr12 10408235 10408822 -133377633 - L1PA6 LINE L1 -1 6153 5566 800 268 84 86 chr12 10408822 10408939 -133377516 + L2 LINE L2 3197 3313 0 444 89 36 18 chr12 10410044 10410156 -133376299 + (TA)n Simple_repeat Simple_repeat 1 114 0 1780 168 24 3 chr12 10410156 10410448 -133376007 - AluJo SINE Alu -14 298 1 264 30 0 0 chr12 10410608 10410641 -133375814 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1093 67 11 28 chr12 10410643 10410823 -133375632 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 266 174 0 0 chr12 10410834 10410880 -133375575 - MER66B LTR ERV1 -146 340 295 625 182 28 7 chr12 10411539 10411682 -133374773 - MER96B DNA MER1_type? 0 417 272 7215 66 2 0 chr12 10411998 10413697 -133372758 - L1PA5 LINE L1 0 6154 4435 1103 113 141 0 chr12 10413752 10413937 -133372518 + L1P LINE L1 11 221 -5925 1316 171 228 28 chr12 10464004 10464472 -133321983 - MER4E LTR ERV1 -15 764 1 298 239 60 0 chr12 10464488 10464555 -133321900 + LOR1a LTR ERV1 282 352 -145 439 313 78 0 chr12 10465118 10465335 -133321120 + LTR33 LTR ERVL 264 497 -24 2181 114 107 17 chr12 10465521 10465932 -133320523 - LTR7 LTR ERV1 -2 448 1 632 178 22 60 chr12 10465933 10466118 -133320337 - HERVH LTR ERV1 -1 7712 7535 252 157 39 0 chr12 10466120 10466171 -133320284 - L1M1 LINE L1 -582 5721 5669 1113 219 43 24 chr12 10466229 10466569 -133319886 + L1MA4 LINE L1 5847 6198 -106 2389 182 12 10 chr12 10466569 10467063 -133319392 - HERVH LTR ERV1 -652 7061 6567 462 256 69 44 chr12 10467119 10467279 -133319176 + MIR SINE MIR 53 216 -46 1874 124 65 22 chr12 10467305 10467675 -133318780 - HERVH LTR ERV1 -1559 6154 5769 1100 140 38 0 chr12 10467661 10467847 -133318608 - HERVH LTR ERV1 -3033 4680 4488 * 3037 145 0 10 chr12 10467836 10468346 -133318109 - HERVH LTR ERV1 -3708 4005 3501 335 302 147 70 chr12 10470128 10470424 -133316031 + L2 LINE L2 793 1125 -2189 1247 207 50 47 chr12 10470424 10470751 -133315704 + AluJo SINE Alu 1 312 0 335 302 147 70 chr12 10470751 10470828 -133315627 + L2 LINE L2 1125 1195 -2119 1232 312 70 36 chr12 10470922 10471830 -133314625 + L2 LINE L2 1475 2413 -901 455 259 53 103 chr12 10471856 10472066 -133314389 - MIR SINE MIR -11 251 32 2372 132 28 8 chr12 10472066 10472423 -133314032 + THE1B LTR MaLR 1 364 0 10890 104 27 1 chr12 10472423 10473964 -133312491 + THE1B-int LTR MaLR 1 1580 0 2335 116 30 25 chr12 10473964 10474326 -133312129 + THE1B LTR MaLR 1 364 0 455 259 53 103 chr12 10474326 10474376 -133312079 - MIR SINE MIR -227 35 2 418 335 19 12 chr12 10474955 10475116 -133311339 + L2 LINE L2 3151 3312 -1 234 191 0 44 chr12 10475122 10475190 -133311265 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 201 74 0 0 chr12 10476123 10476150 -133310305 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 948 138 12 31 chr12 10477552 10477712 -133308743 + AluSg/x SINE Alu 154 310 0 3147 163 25 33 chr12 10479891 10480498 -133305957 - L1PB4 LINE L1 -10 6146 5545 194 150 25 0 chr12 10481332 10481372 -133305083 + (TATG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 10481555 10481578 -133304877 + AT_rich Low_complexity Low_complexity 1 23 0 929 148 448 20 chr12 10482205 10482562 -133303893 - MER4B LTR ERV1 -99 511 2 8776 135 50 24 chr12 10482563 10483767 -133302688 - MER4B-int LTR ERV1 0 6758 5440 2095 134 0 0 chr12 10483767 10484058 -133302397 + AluSx SINE Alu 1 291 -21 8776 135 50 24 chr12 10484058 10484975 -133301480 - MER4B-int LTR ERV1 -1318 5440 4549 185 59 59 0 chr12 10484975 10485009 -133301446 + T-rich Low_complexity Low_complexity 2 37 0 1360 119 0 0 chr12 10485034 10485227 -133301228 - AluSq SINE Alu 0 313 121 803 78 9 0 chr12 10485227 10485343 -133301112 + THE1C-int LTR MaLR 1463 1579 -1 839 132 16 8 chr12 10485344 10485473 -133300982 + THE1C LTR MaLR 1 130 -245 7593 27 2 0 chr12 10485473 10486615 -133299840 + L1PA4 LINE L1 5012 6155 0 10747 146 25 3 chr12 10486615 10488394 -133298061 + Tigger1 DNA MER2_type 602 2418 0 213 374 87 0 chr12 10488406 10488521 -133297934 - MIR SINE MIR -136 126 2 298 297 159 33 chr12 10488941 10489123 -133297332 - MIR SINE MIR 0 262 58 226 291 23 12 chr12 10489843 10489929 -133296526 - MIR SINE MIR -108 154 68 623 341 57 43 chr12 10491124 10491561 -133294894 - L2 LINE L2 -34 3279 2837 23 54 0 0 chr12 10491634 10491671 -133294784 + AT_rich Low_complexity Low_complexity 1 37 0 306 206 0 0 chr12 10492043 10492116 -133294339 + (CA)n Simple_repeat Simple_repeat 2 74 0 404 314 40 40 chr12 10492997 10493223 -133293232 + L2 LINE L2 3088 3313 0 351 0 0 0 chr12 10495885 10495924 -133290531 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2408 60 0 7 chr12 10499127 10499426 -133287029 - AluY SINE Alu -14 297 1 2639 33 0 0 chr12 10499686 10499986 -133286469 - AluY SINE Alu -10 301 2 1839 168 7 7 chr12 10500878 10501182 -133285273 + AluJb SINE Alu 2 305 -7 4229 166 41 43 chr12 10501247 10502023 -133284432 - LTR1B LTR ERV1 0 826 51 1353 65 0 0 chr12 10502023 10502193 -133284262 - L1PA5 LINE L1 -12 6142 5973 4229 166 41 43 chr12 10502193 10502244 -133284211 - LTR1B LTR ERV1 -775 51 1 253 292 72 77 chr12 10502365 10502574 -133283881 - L2 LINE L2 -2 3311 3104 373 297 34 0 chr12 10502796 10502914 -133283541 - MIR SINE MIR -123 139 18 2139 310 83 66 chr12 10503326 10504019 -133282436 - L2 LINE L2 -778 2536 1857 2525 68 0 0 chr12 10504019 10504330 -133282125 + AluY SINE Alu 1 311 0 2139 310 83 66 chr12 10504330 10505337 -133281118 - L2 LINE L2 -1457 1857 806 567 212 23 15 chr12 10505348 10505480 -133280975 + MER3 DNA MER1_type 1 133 -76 182 61 0 30 chr12 10505481 10505514 -133280941 + (TTTAA)n Simple_repeat Simple_repeat 1 32 0 491 313 81 26 chr12 10505593 10505865 -133280590 - L2 LINE L2 -2521 793 507 803 149 242 173 chr12 10506140 10506590 -133279865 + LTR12 LTR ERV1 1 481 -233 273 192 0 0 chr12 10507165 10507217 -133279238 - MLT1D LTR MaLR 0 505 454 324 64 0 0 chr12 10507400 10507447 -133279008 + (TC)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr12 10507447 10507480 -133278975 + (CA)n Simple_repeat Simple_repeat 1 33 0 367 299 28 9 chr12 10508705 10508832 -133277623 - MIR SINE MIR -62 146 23 1273 51 0 0 chr12 10509646 10509803 -133276652 - L1PA3 LINE L1 -3 6152 5996 183 236 42 56 chr12 10511223 10511295 -133275160 - MER5A DNA MER1_type 0 189 119 27 96 0 0 chr12 10511524 10511607 -133274848 + AT_rich Low_complexity Low_complexity 1 83 0 237 278 14 14 chr12 10513085 10513157 -133273298 + Charlie2b DNA MER1_type 599 670 -2112 419 277 43 18 chr12 10513242 10513388 -133273067 - MIR SINE MIR -63 145 33 594 230 48 62 chr12 10513423 10513632 -133272823 + Charlie2a DNA MER1_type 1466 1671 -1191 380 219 73 0 chr12 10513645 10513768 -133272687 + Charlie2a DNA MER1_type 2729 2860 -2 27 62 0 0 chr12 10513802 10513850 -133272605 + AT_rich Low_complexity Low_complexity 1 48 0 1179 214 20 3 chr12 10513880 10514175 -133272280 - L1MA4 LINE L1 -6 6294 5995 776 247 13 34 chr12 10515390 10515625 -133270830 - MLT2D LTR ERVL -184 230 1 219 237 0 17 chr12 10516649 10516708 -133269747 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 * 224 174 22 0 chr12 10516666 10516712 -133269743 + (TA)n Simple_repeat Simple_repeat 1 47 0 2266 95 0 10 chr12 10517165 10517461 -133268994 + AluSx SINE Alu 3 295 -17 200 261 0 0 chr12 10519078 10519124 -133267331 + L2 LINE L2 3256 3301 -12 363 167 83 6 chr12 10519184 10519340 -133267115 + (TA)n Simple_repeat Simple_repeat 2 169 0 36 0 0 0 chr12 10519811 10519847 -133266608 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr12 10519990 10520018 -133266437 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr12 10521428 10521458 -133264997 + (A)n Simple_repeat Simple_repeat 1 30 0 609 275 46 118 chr12 10521640 10522142 -133264313 + HAL1 LINE L1 1123 1588 -919 1861 144 3 13 chr12 10522440 10522739 -133263716 + AluJb SINE Alu 6 301 -11 2332 98 0 0 chr12 10522873 10523179 -133263276 + AluY SINE Alu 1 306 -5 1817 211 28 6 chr12 10523938 10524299 -133262156 + MLT2D LTR ERVL 1 369 -45 240 133 0 0 chr12 10524320 10524365 -133262090 + LTR66 LTR ERVL 394 438 -172 613 333 6 0 chr12 10524429 10524600 -133261855 + MIR SINE MIR 2 173 -89 25 31 0 0 chr12 10524600 10524632 -133261823 + AT_rich Low_complexity Low_complexity 1 32 0 816 261 62 54 chr12 10524635 10524881 -133261574 - L1MC5 LINE L1 -58 7903 7660 1583 233 57 70 chr12 10524881 10525543 -133260912 - MLT1E1 LTR MaLR 0 654 1 816 261 62 54 chr12 10525543 10525816 -133260639 - L1MC5 LINE L1 -301 7660 7380 22 56 0 0 chr12 10526504 10526540 -133259915 + AT_rich Low_complexity Low_complexity 1 36 0 2544 60 3 0 chr12 10527244 10527545 -133258910 - AluSp SINE Alu -9 304 3 24 32 0 0 chr12 10527979 10528010 -133258445 + AT_rich Low_complexity Low_complexity 1 31 0 366 287 15 15 chr12 10528265 10528401 -133258054 + T-rich Low_complexity Low_complexity 3 138 0 541 199 15 0 chr12 10528692 10528823 -133257632 + CT-rich Low_complexity Low_complexity 2 134 0 1741 174 10 7 chr12 10528833 10529143 -133257312 - AluJb SINE Alu -1 311 1 33 25 0 0 chr12 10529494 10529534 -133256921 + AT_rich Low_complexity Low_complexity 1 40 0 383 347 101 10 chr12 10529906 10530203 -133256252 - L2 LINE L2 -614 2700 2377 26 50 0 0 chr12 10530723 10530763 -133255692 + AT_rich Low_complexity Low_complexity 1 40 0 826 182 0 0 chr12 10530937 10531085 -133255370 + L1PB4 LINE L1 6006 6153 -3 1473 200 40 45 chr12 10531311 10531520 -133254935 - L1MA10 LINE L1 -1 6333 6125 2440 93 0 0 chr12 10531520 10531821 -133254634 - AluSx SINE Alu -11 301 1 1473 200 40 45 chr12 10531821 10532011 -133254444 - L1MA10 LINE L1 -209 6125 5936 2488 132 37 30 chr12 10532092 10532523 -133253932 - MER61C LTR ERV1 0 434 1 1901 170 121 7 chr12 10532850 10533262 -133253193 + LOR1b LTR ERV1 1 459 -2 2438 114 13 10 chr12 10533437 10533959 -133252496 - MER61C-int LTR ERV1 0 5217 4657 357 118 0 0 chr12 10533949 10534000 -133252455 - MER61C-int LTR ERV1 -510 4707 4657 * 20237 96 11 10 chr12 10533990 10536892 -133249563 - MER61C-int LTR ERV1 -510 4707 1803 2124 135 3 0 chr12 10536895 10537192 -133249263 - AluSx SINE Alu -14 298 1 373 164 0 0 chr12 10537232 10537299 -133249156 + LTR30 LTR ERV1 552 618 -104 1260 209 44 39 chr12 10537321 10537825 -133248630 - LTR10B LTR ERV1 -5 542 1 22850 218 14 23 chr12 10537861 10545254 -133241201 - HERVI LTR ERV1 -31 7754 454 1002 212 89 27 chr12 10545277 10545570 -133240885 - HERVI LTR ERV1 -6331 318 8 1250 173 171 72 chr12 10545574 10546072 -133240383 - LTR10B LTR ERV1 0 547 1 2313 90 41 6 chr12 10546074 10546439 -133240016 - MER61A-int LTR ERV1 -3429 1788 1411 2759 199 52 13 chr12 10546523 10547203 -133239252 - MER61A-int LTR ERV1 -4510 707 2 1281 192 93 31 chr12 10547204 10547527 -133238928 - MER61A LTR ERV1 0 343 1 1142 193 13 17 chr12 10547887 10548126 -133238329 + MLT1A1 LTR MaLR 1 238 -127 357 149 0 0 chr12 10548616 10548683 -133237772 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 6123 104 12 3 chr12 10548895 10550536 -133235919 + L1PA8 LINE L1 4511 6164 -8 198 141 31 16 chr12 10550696 10550760 -133235695 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr12 10550873 10550894 -133235561 + AT_rich Low_complexity Low_complexity 1 21 0 187 30 30 30 chr12 10551109 10551142 -133235313 + (TAAAAA)n Simple_repeat Simple_repeat 5 37 0 793 134 0 0 chr12 10551874 10552008 -133234447 - L1PA13 LINE L1 0 7601 7468 3851 151 19 7 chr12 10552307 10553340 -133233115 - L1PA13 LINE L1 -544 7055 6017 8735 156 15 2 chr12 10553352 10555374 -133231081 - L1PA13 LINE L1 -4998 2583 1 764 256 31 9 chr12 10555642 10555869 -133230586 + MIR SINE MIR 1 232 -30 2420 133 13 65 chr12 10555879 10555982 -133230473 - Tigger2a DNA MER2_type -2274 434 327 1744 165 21 4 chr12 10555982 10556290 -133230165 + AluJo SINE Alu 11 312 0 2420 133 13 65 chr12 10556290 10556644 -133229811 - Tigger2a DNA MER2_type -2381 327 1 180 0 0 0 chr12 10557583 10557603 -133228852 + (TTA)n Simple_repeat Simple_repeat 2 21 0 936 106 0 0 chr12 10557691 10557832 -133228623 - L1PA8 LINE L1 -4 6168 6028 * 7057 42 5 42 chr12 10557829 10558790 -133227665 + L1PA5 LINE L1 5226 6152 -2 860 97 14 0 chr12 10558805 10558945 -133227510 - L1P3 LINE L1 -678 5476 5328 297 51 0 0 chr12 10559101 10559140 -133227315 + (CAACC)n Simple_repeat Simple_repeat 2 40 0 2742 186 13 2 chr12 10559412 10559943 -133226512 + MER34 LTR ERV1 1 537 -5 211 319 113 7 chr12 10560075 10560216 -133226239 + MIR SINE MIR 34 189 -73 1286 166 42 12 chr12 10560294 10560553 -133225902 + LOR1a LTR ERV1 19 285 -212 496 146 0 0 chr12 10560553 10560635 -133225820 + LOR1b LTR ERV1 380 461 0 240 86 0 0 chr12 10561681 10561716 -133224739 + (TG)n Simple_repeat Simple_repeat 2 36 0 1609 153 38 107 chr12 10561717 10562090 -133224365 - Tigger3(Golem) DNA MER2_type 0 3029 2 296 216 0 11 chr12 10562127 10562215 -133224240 + (TA)n Simple_repeat Simple_repeat 1 87 0 914 264 32 42 chr12 10562669 10562845 -133223610 + L1ME LINE L1 4981 5157 -1007 2163 125 6 3 chr12 10562845 10563156 -133223299 + AluSx SINE Alu 1 312 0 914 264 32 42 chr12 10563156 10563602 -133222853 + L1ME LINE L1 5157 5591 -573 245 306 68 48 chr12 10563734 10564398 -133222057 - L1M4 LINE L1 -1803 4343 3667 26 50 0 0 chr12 10564528 10564568 -133221887 + AT_rich Low_complexity Low_complexity 1 40 0 1282 195 91 75 chr12 10564642 10565026 -133221429 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr12 10565049 10565070 -133221385 + AT_rich Low_complexity Low_complexity 1 21 0 464 301 119 60 chr12 10565141 10565684 -133220771 - L1M4c LINE L1 -4713 1713 1026 409 369 79 0 chr12 10565984 10566225 -133220230 + L3 LINE CR1 1303 1562 -15 1370 219 89 37 chr12 10567212 10567358 -133219097 - L1ME1 LINE L1 -83 6083 5946 1854 168 10 0 chr12 10567358 10567650 -133218805 - AluJb SINE Alu -17 295 1 1370 219 89 37 chr12 10567650 10567988 -133218467 - L1ME1 LINE L1 -220 5946 5574 2490 67 0 0 chr12 10567988 10568287 -133218168 + AluY SINE Alu 1 299 -12 279 0 0 0 chr12 10568887 10568918 -133217537 + (TG)n Simple_repeat Simple_repeat 1 31 0 2240 104 7 0 chr12 10569020 10569318 -133217137 - AluSp SINE Alu -13 300 1 947 270 90 48 chr12 10569517 10570147 -133216308 - L2 LINE L2 -6 3307 2653 2336 62 0 13 chr12 10570663 10570970 -133215485 - AluY SINE Alu -8 303 1 1580 170 70 55 chr12 10572350 10572733 -133213722 + MLT1B LTR MaLR 2 390 0 749 317 132 29 chr12 10573886 10574549 -133211906 + L2 LINE L2 2554 3292 -21 284 318 55 9 chr12 10575670 10575780 -133210675 - L2 LINE L2 0 3313 3199 1526 290 104 37 chr12 10575855 10576607 -133209848 - L2 LINE L2 -1254 2060 1259 193 384 78 68 chr12 10576687 10576968 -133209487 + L2 LINE L2 2987 3270 -2 26 50 0 0 chr12 10577098 10577138 -133209317 + AT_rich Low_complexity Low_complexity 1 40 0 2810 231 59 55 chr12 10578590 10579661 -133206794 - Tigger6a DNA MER2_type 0 1083 9 319 237 8 8 chr12 10579702 10579714 -133206741 + (TA)n Simple_repeat Simple_repeat 2 13 -119 1980 96 0 4 chr12 10579714 10579974 -133206481 + AluSq SINE Alu 1 259 -54 319 237 8 8 chr12 10579974 10580092 -133206363 + (TA)n Simple_repeat Simple_repeat 12 132 0 635 267 131 5 chr12 10580147 10580353 -133206102 - MLT1C LTR MaLR -16 451 220 228 321 57 21 chr12 10580350 10580490 -133205965 - MLT1L LTR MaLR -326 289 145 * 302 158 0 0 chr12 10580655 10580712 -133205743 + MER1A DNA MER1_type 1 57 -470 * 3277 120 2 25 chr12 10580711 10581235 -133205220 + MER1A DNA MER1_type 18 529 0 2218 236 89 23 chr12 10581235 10581896 -133204559 - MER21B LTR ERV1 -116 747 43 342 257 0 0 chr12 10581899 10581969 -133204486 - MER21B LTR ERV1 -774 89 20 2103 115 0 3 chr12 10582191 10582478 -133203977 - AluSg SINE Alu -24 286 1 336 24 0 0 chr12 10582500 10582541 -133203914 + (TG)n Simple_repeat Simple_repeat 1 41 0 3912 198 21 19 chr12 10582598 10583634 -133202821 + L1MB2 LINE L1 5131 6164 -7 721 160 28 0 chr12 10584924 10585068 -133201387 + L1MB3 LINE L1 5724 5871 -312 327 210 70 14 chr12 10585446 10585589 -133200866 + MER53 DNA DNA 6 156 -33 1077 189 15 5 chr12 10585615 10585821 -133200634 + LOR1b LTR ERV1 254 461 0 1954 193 42 2 chr12 10585821 10586226 -133200229 + LOR1b-int LTR ERV1 1 421 -7699 1353 152 46 0 chr12 10586193 10586430 -133200025 + LOR1b-int LTR ERV1 203 450 -7670 * 240 174 43 0 chr12 10586507 10586553 -133199902 + 5S rRNA rRNA 2 49 -72 872 158 79 0 chr12 10586585 10586749 -133199706 + LOR1b-int LTR ERV1 524 700 -7420 5220 73 33 62 chr12 10586779 10586790 -133199665 + SVA Other Other 57 67 -1393 774 31 0 0 chr12 10586790 10586887 -133199568 + (TCTCCC)n Simple_repeat Simple_repeat 1 97 0 5220 72 36 59 chr12 10586887 10587718 -133198737 + SVA Other Other 57 868 -518 6426 68 15 47 chr12 10587872 10588857 -133197598 + SVA Other Other 433 1386 0 1756 122 20 4 chr12 10588887 10589134 -133197321 + AluJb SINE Alu 43 293 -19 4363 122 58 6 chr12 10589135 10589711 -133196744 + LOR1b-int LTR ERV1 688 1320 -6800 2315 91 0 10 chr12 10589711 10590018 -133196437 - AluY SINE Alu -7 304 1 4363 122 58 6 chr12 10590018 10590259 -133196196 + LOR1b-int LTR ERV1 1320 1547 -6573 1020 181 59 42 chr12 10590260 10590813 -133195642 - MER4-int LTR ERV1 -2591 4007 2348 1799 108 22 4 chr12 10590824 10591093 -133195362 - MER4-int LTR ERV1 -6261 1859 1586 7893 165 20 30 chr12 10591102 10591660 -133194795 + LOR1b-int LTR ERV1 5672 6234 -1886 1621 153 169 110 chr12 10591660 10591845 -133194610 - MER4A LTR ERV1 -4 596 423 2361 105 0 0 chr12 10591845 10592149 -133194306 + AluSx SINE Alu 9 312 0 1621 153 169 110 chr12 10592149 10592526 -133193929 - MER4A LTR ERV1 -177 423 1 7893 165 20 30 chr12 10592526 10593124 -133193331 + LOR1b-int LTR ERV1 6234 6836 -1284 5010 95 12 1 chr12 10593124 10593777 -133192678 + PABL_A LTR ERV1 1 660 0 7893 165 20 30 chr12 10593777 10593796 -133192659 + LOR1b-int LTR ERV1 6836 6854 -1266 2316 97 0 3 chr12 10593796 10594106 -133192349 + AluSq SINE Alu 1 309 -4 7893 165 20 30 chr12 10594106 10594351 -133192104 + LOR1b-int LTR ERV1 6854 7080 -1040 5792 149 52 7 chr12 10594354 10595280 -133191175 + LOR1b-int LTR ERV1 7153 8120 0 1017 194 79 52 chr12 10595280 10595532 -133190923 + LOR1b LTR ERV1 1 259 -202 1689 139 233 14 chr12 10595547 10596014 -133190441 - MER4E LTR ERV1 -15 764 1 304 239 60 0 chr12 10596030 10596097 -133190358 + LOR1a LTR ERV1 282 352 -145 419 313 81 0 chr12 10596669 10596880 -133189575 + LTR33 LTR ERVL 273 500 -21 2740 98 106 5 chr12 10597063 10597470 -133188985 - LTR7 LTR ERV1 -2 448 1 8220 100 21 4 chr12 10597470 10598636 -133187819 - HERVH LTR ERV1 0 7713 6529 2798 88 15 0 chr12 10598609 10599017 -133187438 - HERVH LTR ERV1 -1333 6380 5967 * 229 349 41 41 chr12 10599287 10599456 -133186999 + MIR3 SINE MIR 19 187 -21 2797 16 0 0 chr12 10599729 10600034 -133186421 - AluYb8 SINE Alu -13 305 1 186 43 0 0 chr12 10600096 10600119 -133186336 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10600377 10600471 -133185984 + GA-rich Low_complexity Low_complexity 1 91 0 489 270 78 65 chr12 10600570 10600723 -133185732 + MIR SINE MIR 2 160 -102 2149 102 25 35 chr12 10600723 10601037 -133185418 + AluSx SINE Alu 1 311 -1 489 270 78 65 chr12 10601037 10601113 -133185342 + MIR SINE MIR 160 234 -28 28 0 0 0 chr12 10601375 10601403 -133185052 + AT_rich Low_complexity Low_complexity 1 28 0 360 268 65 69 chr12 10601404 10601666 -133184789 + L1MDa LINE L1 2209 2494 -4116 225 291 23 12 chr12 10601671 10601757 -133184698 + L1MDa LINE L1 2822 2908 -3632 707 234 18 0 chr12 10601840 10602011 -133184444 + L1MDa LINE L1 3176 3349 -3191 1707 77 9 5 chr12 10602126 10602348 -133184107 + AluY SINE Alu 66 288 -23 367 194 0 0 chr12 10602494 10602561 -133183894 + MIR SINE MIR 173 239 -23 21 0 0 0 chr12 10602574 10602595 -133183860 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 10602668 10602689 -133183766 + (CA)n Simple_repeat Simple_repeat 2 22 0 1880 160 3 0 chr12 10602810 10603097 -133183358 - AluJo SINE Alu -24 288 1 1435 66 0 0 chr12 10603780 10603963 -133182492 + LTR14B LTR ERVK 426 608 0 1211 146 0 0 chr12 10603963 10604141 -133182314 + AluJb SINE Alu 129 306 -6 207 461 0 0 chr12 10604208 10604260 -133182195 + T-rich Low_complexity Low_complexity 1 52 0 314 248 0 0 chr12 10604281 10604382 -133182073 + G-rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr12 10604936 10604957 -133181498 + GC_rich Low_complexity Low_complexity 1 21 0 238 171 105 53 chr12 10605104 10605180 -133181275 - L1PBa LINE L1 -4487 2376 2297 27 0 0 0 chr12 10605975 10606002 -133180453 + GC_rich Low_complexity Low_complexity 1 27 0 229 349 41 41 chr12 10606325 10606494 -133179961 - MIR3 SINE MIR -21 187 19 1545 177 78 14 chr12 10607184 10607467 -133178988 + AluJb SINE Alu 1 301 -11 189 107 0 0 chr12 10609182 10609210 -133177245 + (A)n Simple_repeat Simple_repeat 1 28 0 186 250 0 0 chr12 10609351 10609403 -133177052 + L2 LINE L2 3262 3313 0 638 301 15 50 chr12 10609730 10609992 -133176463 + MIR SINE MIR 8 260 -2 1106 137 17 112 chr12 10610200 10610441 -133176014 + AluJo SINE Alu 1 218 -94 360 0 0 0 chr12 10610475 10610515 -133175940 + (CA)n Simple_repeat Simple_repeat 2 41 0 478 235 92 46 chr12 10610825 10610978 -133175477 + MIR SINE MIR 80 239 -23 2283 118 0 6 chr12 10611871 10612185 -133174270 - AluSx SINE Alu 0 312 1 472 298 68 40 chr12 10612995 10613243 -133173212 - MIR SINE MIR -6 256 2 568 222 89 33 chr12 10613471 10613694 -133172761 - MER67A LTR ERV1 0 543 273 * 1332 221 66 75 chr12 10613668 10613922 -133172533 - MER67B LTR ERV1 -282 379 124 2383 80 3 6 chr12 10613922 10614233 -133172222 - AluSp SINE Alu -3 310 1 1332 221 66 75 chr12 10614233 10614295 -133172160 - MER67B LTR ERV1 -537 124 196 2445 79 0 0 chr12 10614295 10614599 -133171856 - AluY SINE Alu -7 304 1 1332 221 66 75 chr12 10614599 10614793 -133171662 - MER67B LTR ERV1 -464 197 3 604 223 106 64 chr12 10614986 10615244 -133171211 + MER39 LTR ERV1 8 484 -223 923 183 195 24 chr12 10615245 10615496 -133170959 - MER39 LTR ERV1 -1 706 413 384 206 112 9 chr12 10615496 10615603 -133170852 + MER39 LTR ERV1 590 707 0 2147 144 0 3 chr12 10616062 10616375 -133170080 + AluSq SINE Alu 1 312 -1 2156 100 9 38 chr12 10616509 10616829 -133169626 + AluSp SINE Alu 1 311 -2 2010 98 4 4 chr12 10616979 10617245 -133169210 + L1PB1 LINE L1 5885 6150 -1 206 233 55 14 chr12 10617394 10617467 -133168988 + (TAAA)n Simple_repeat Simple_repeat 4 79 0 1717 174 3 22 chr12 10617473 10617789 -133168666 + AluJb SINE Alu 1 310 -2 2355 103 0 3 chr12 10618502 10618814 -133167641 - AluSp SINE Alu -2 311 1 761 200 8 0 chr12 10618857 10618987 -133167468 + AluJ SINE Alu 3 133 -169 4016 82 95 12 chr12 10618992 10619551 -133166904 + LTR14B LTR ERVK 4 608 0 1091 135 49 0 chr12 10619551 10619714 -133166741 + AluJ SINE Alu 129 299 -13 1318 102 0 0 chr12 10620089 10620256 -133166199 + AluSq SINE Alu 1 167 -146 453 217 54 0 chr12 10620870 10620962 -133165493 + AluY SINE Alu 199 295 -16 2134 109 0 3 chr12 10621193 10621476 -133164979 + AluSq SINE Alu 1 282 -31 207 0 0 0 chr12 10621479 10621502 -133164953 + (CAA)n Simple_repeat Simple_repeat 2 24 0 261 241 0 38 chr12 10621893 10621972 -133164483 + A-rich Low_complexity Low_complexity 2 77 0 268 206 0 15 chr12 10623591 10623659 -133162796 + CT-rich Low_complexity Low_complexity 2 68 0 2455 53 0 13 chr12 10623759 10624062 -133162393 - AluY SINE Alu -12 299 1 401 343 25 10 chr12 10624063 10624264 -133162191 + L2 LINE L2 2962 3165 -148 516 11 46 172 chr12 10624265 10624352 -133162103 - MADE1 DNA Mariner 0 80 5 310 267 68 48 chr12 10624393 10624539 -133161916 + L2 LINE L2 3156 3304 -9 5508 142 38 13 chr12 10624903 10626199 -133160256 - L1PB3 LINE L1 -1 6869 5540 2103 142 0 0 chr12 10627771 10628080 -133158375 - AluSx SINE Alu -1 311 3 7201 192 13 25 chr12 10628086 10629144 -133157311 - L1PB3 LINE L1 -1311 5551 4518 2150 147 0 0 chr12 10629144 10629444 -133157011 - AluSx SINE Alu -11 301 2 7201 192 13 25 chr12 10629444 10629952 -133156503 - L1PB3 LINE L1 -2344 4518 4005 242 259 12 25 chr12 10630056 10630137 -133156318 - MARNA DNA Mariner -58 528 449 25460 55 7 3 chr12 10630199 10634073 -133152382 - L1PA6 LINE L1 0 6154 2268 6110 199 68 24 chr12 10634073 10634431 -133152024 - L1PB3 LINE L1 -3815 3047 2706 2208 118 0 10 chr12 10634431 10634602 -133151853 - AluSg SINE Alu -8 302 134 2139 132 3 3 chr12 10634602 10634912 -133151543 - AluSq SINE Alu -3 310 1 2208 118 0 10 chr12 10634912 10635045 -133151410 - AluSg SINE Alu -176 134 1 6110 199 68 24 chr12 10635045 10638427 -133148028 - L1PB3 LINE L1 -4156 2706 78 2354 95 3 0 chr12 10638427 10638731 -133147724 - AluSx SINE Alu -7 305 1 6110 199 68 24 chr12 10638731 10638810 -133147645 - L1PB3 LINE L1 -6784 78 4 22 70 0 0 chr12 10638810 10638853 -133147602 + AT_rich Low_complexity Low_complexity 1 43 0 193 370 28 0 chr12 10639047 10639155 -133147300 - MIR3 SINE MIR -29 179 69 1067 224 76 59 chr12 10639162 10639519 -133146936 + MLT1A1 LTR MaLR 1 363 -2 245 271 28 75 chr12 10640676 10640783 -133145672 + MIR SINE MIR 41 142 -66 269 236 14 14 chr12 10640793 10640865 -133145590 - MIR SINE MIR -7 255 184 23 33 0 0 chr12 10641936 10641966 -133144489 + AT_rich Low_complexity Low_complexity 1 30 0 1361 167 0 9 chr12 10645297 10645513 -133140942 - AluSx SINE Alu -98 214 1 1898 133 17 17 chr12 10645745 10646038 -133140417 - AluSx SINE Alu -19 293 1 2389 101 0 0 chr12 10646342 10646650 -133139805 - AluSg SINE Alu 0 310 3 2346 96 0 0 chr12 10646730 10647059 -133139396 - AluSq SINE Alu 0 329 1 215 213 93 13 chr12 10648078 10648153 -133138302 - MIR SINE MIR -59 203 123 2116 128 0 0 chr12 10648169 10648466 -133137989 + AluSq SINE Alu 1 297 -16 2569 69 3 0 chr12 10650043 10650347 -133136108 - AluSq SINE Alu -8 305 1 640 223 8 0 chr12 10650889 10651010 -133135445 + FLAM_A SINE Alu 2 123 -19 2121 120 7 3 chr12 10651277 10651576 -133134879 + AluSp SINE Alu 1 300 -13 2192 113 10 0 chr12 10651751 10652044 -133134411 - AluSx SINE Alu -14 298 3 1590 221 95 42 chr12 10652095 10652141 -133134314 - MLT2B1 LTR ERVL 0 520 478 1884 189 9 3 chr12 10652141 10652485 -133133970 - MER7A DNA MER2_type -1 345 2 1590 221 95 42 chr12 10652485 10652932 -133133523 - MLT2B1 LTR ERVL -42 478 1 196 258 65 32 chr12 10652997 10653059 -133133396 - MER5B DNA MER1_type -10 168 105 210 299 13 13 chr12 10653184 10653261 -133133194 - MER5B DNA MER1_type -101 77 1 2264 123 0 0 chr12 10653441 10653749 -133132706 + AluSg SINE Alu 1 308 -2 1328 147 10 10 chr12 10653749 10653953 -133132502 + AluSg/x SINE Alu 83 286 -24 427 256 34 45 chr12 10654386 10654562 -133131893 - MER5B DNA MER1_type -3 175 2 1252 128 0 6 chr12 10654746 10654918 -133131537 + AluSx SINE Alu 1 171 -141 853 148 15 0 chr12 10655005 10655140 -133131315 + AluSx SINE Alu 173 309 -3 1549 187 35 48 chr12 10655240 10655550 -133130905 + AluJo SINE Alu 1 306 -6 238 211 72 29 chr12 10655550 10655745 -133130710 - L1MC4 LINE L1 -17 6149 5943 1308 185 0 102 chr12 10655776 10656090 -133130365 - AluJo SINE Alu -30 282 1 594 227 53 115 chr12 10656094 10656416 -133130039 - MLT1H LTR MaLR -140 409 108 180 224 0 41 chr12 10656491 10656540 -133129915 - L2 LINE L2 -37 3235 3189 2054 113 3 0 chr12 10656660 10656981 -133129474 + AluSx SINE Alu 1 322 0 1557 199 69 27 chr12 10656981 10657357 -133129098 - MSTA LTR MaLR -36 392 1 1997 111 4 0 chr12 10657745 10658042 -133128413 + AluSx SINE Alu 14 311 0 2028 115 3 16 chr12 10658172 10658484 -133127971 + AluSq SINE Alu 1 308 -5 530 97 0 0 chr12 10658575 10658647 -133127808 - AluY SINE Alu -14 295 224 1274 68 6 6 chr12 10658647 10658810 -133127645 - AluY SINE Alu -148 163 1 1596 72 0 45 chr12 10658856 10659077 -133127378 - AluSc SINE Alu -98 211 1 2153 122 3 0 chr12 10659079 10659382 -133127073 - AluSx SINE Alu -8 304 1 2557 62 0 0 chr12 10660244 10660548 -133125907 - AluYb8 SINE Alu -14 304 1 186 43 0 0 chr12 10660610 10660633 -133125822 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10660891 10660985 -133125470 + GA-rich Low_complexity Low_complexity 1 91 0 419 255 83 69 chr12 10661098 10661237 -133125218 + MIR SINE MIR 16 161 -101 2170 102 25 35 chr12 10661237 10661551 -133124904 + AluSx SINE Alu 1 311 -1 419 255 83 69 chr12 10661551 10661627 -133124828 + MIR SINE MIR 161 234 -28 238 228 116 30 chr12 10661778 10661996 -133124459 - L1MEd LINE L1 -2812 3317 3088 22 0 0 0 chr12 10662282 10662304 -133124151 + GC_rich Low_complexity Low_complexity 1 22 0 645 170 0 85 chr12 10662484 10662707 -133123748 - AluSg1 SINE Alu -104 205 2 232 234 88 66 chr12 10662730 10662822 -133123633 - MIR SINE MIR -72 190 93 2228 92 14 7 chr12 10662822 10663114 -133123341 + AluSg SINE Alu 1 294 -16 232 234 88 66 chr12 10663114 10663158 -133123297 - MIR SINE MIR -169 93 51 2129 121 26 3 chr12 10663344 10663649 -133122806 + AluSx SINE Alu 1 312 0 1012 115 0 61 chr12 10663663 10663828 -133122627 + AluJb SINE Alu 1 155 -157 229 277 40 76 chr12 10664093 10664515 -133121940 - L1MEd LINE L1 -4920 1199 793 1827 138 76 3 chr12 10666182 10666471 -133119984 - AluJb SINE Alu -2 310 1 2363 89 3 3 chr12 10666839 10667143 -133119312 - AluSp SINE Alu -9 304 1 302 189 40 0 chr12 10667523 10667597 -133118858 + L1MB5 LINE L1 6098 6174 0 523 170 0 19 chr12 10667859 10667965 -133118490 + L1PA3 LINE L1 6046 6149 -6 857 315 31 45 chr12 10668560 10668941 -133117514 + L2 LINE L2 2589 2964 -350 1117 72 7 7 chr12 10668947 10669099 -133117356 - AluY SINE Alu -18 293 142 276 30 0 0 chr12 10669417 10669450 -133117005 + (CA)n Simple_repeat Simple_repeat 2 34 0 2100 63 22 41 chr12 10669510 10669827 -133116628 - AluY SINE Alu 0 311 1 325 213 67 0 chr12 10669839 10669914 -133116541 + MER46C DNA MER2_type 258 337 -1 297 230 14 0 chr12 10669916 10669990 -133116465 + MIR SINE MIR 154 228 -34 29 47 0 0 chr12 10670515 10670558 -133115897 + GC_rich Low_complexity Low_complexity 1 43 0 413 211 13 0 chr12 10671636 10671712 -133114743 + MER31B LTR ERV1 1 77 -389 868 201 5 48 chr12 10671726 10671915 -133114540 - AluJo SINE Alu -87 225 45 360 230 40 0 chr12 10671924 10671998 -133114457 + MER31B LTR ERV1 88 164 -302 1077 151 0 6 chr12 10672007 10672166 -133114289 - FRAM SINE Alu -25 151 1 1697 191 0 3 chr12 10672178 10672466 -133113989 - AluJb SINE Alu -25 287 1 702 147 0 0 chr12 10672523 10672632 -133113823 - FLAM_C SINE Alu -33 110 2 1174 119 0 6 chr12 10672723 10672891 -133113564 - AluSg/x SINE Alu -11 299 133 748 216 67 14 chr12 10672893 10673101 -133113354 - L1ME3 LINE L1 -181 5981 5763 216 396 19 34 chr12 10674345 10674610 -133111845 - MIR SINE MIR 0 262 2 750 188 0 0 chr12 10674837 10674954 -133111501 + FLAM_C SINE Alu 2 118 -25 2296 102 13 3 chr12 10675106 10675411 -133111044 + AluSx SINE Alu 1 308 -4 410 341 57 19 chr12 10675893 10676157 -133110298 + L1MC4a LINE L1 5594 5867 -1941 372 160 150 20 chr12 10676211 10676311 -133110144 + FRAM SINE Alu 22 134 -32 205 264 52 65 chr12 10676444 10676599 -133109856 - MIR3 SINE MIR -4 204 52 349 173 30 1 chr12 10676723 10676793 -133109662 - FLAM_A SINE Alu -15 118 53 1170 159 13 31 chr12 10677379 10677605 -133108850 - Tigger5 DNA MER2_type -62 2261 2040 232 214 0 0 chr12 10677590 10677632 -133108823 - Tigger5 DNA MER2_type -2265 58 17 * 1969 55 31 12 chr12 10679356 10679611 -133106844 - MLT2A1 LTR ERVL -184 260 1 1588 181 4 4 chr12 10679623 10679893 -133106562 - AluJo SINE Alu -20 292 23 3702 144 39 8 chr12 10679903 10680542 -133105913 - Tigger1 DNA MER2_type -812 1606 948 722 123 44 0 chr12 10680696 10680810 -133105645 + AluSp/q SINE Alu 194 312 -1 1900 109 9 97 chr12 10681006 10681346 -133105109 - AluSq SINE Alu -3 310 1 499 186 118 0 chr12 10681459 10681561 -133104894 - MER21B LTR ERV1 -423 440 327 3978 136 34 11 chr12 10682006 10682660 -133103795 + Tigger1 DNA MER2_type 1749 2417 -1 706 173 11 108 chr12 10682660 10682845 -133103610 - L1MD2 LINE L1 -110 6249 6083 2252 208 2 0 chr12 10683271 10683708 -133102747 - L1 LINE L1 -1935 4211 3774 1829 166 7 7 chr12 10683712 10684013 -133102442 - AluSx SINE Alu -11 301 1 198 0 0 0 chr12 10684016 10684038 -133102417 + (T)n Simple_repeat Simple_repeat 1 22 0 434 157 83 0 chr12 10684285 10684406 -133102049 - AluSg/x SINE Alu -2 310 180 952 100 14 14 chr12 10684616 10684756 -133101699 + AluSg/x SINE Alu 169 308 -4 2307 105 20 0 chr12 10684899 10685204 -133101251 + AluSx SINE Alu 2 312 0 2243 93 13 0 chr12 10685729 10686031 -133100424 + LTR8A LTR ERV1 38 343 -384 315 64 21 0 chr12 10686026 10686073 -133100382 + MADE1 DNA Mariner 33 80 0 * 2160 110 7 0 chr12 10686108 10686399 -133100056 - AluSp SINE Alu -20 293 1 672 173 0 0 chr12 10686590 10686700 -133099755 - FLAM_C SINE Alu -32 111 2 225 108 0 27 chr12 10687254 10687291 -133099164 - MADE1 DNA Mariner 0 80 45 291 260 48 10 chr12 10688125 10688229 -133098226 - MER110A LTR ERV1 -360 108 1 1266 154 5 19 chr12 10688358 10688566 -133097889 + AluSx SINE Alu 1 205 -107 1451 184 11 55 chr12 10688661 10689006 -133097449 - MER31A LTR ERV1 0 485 156 451 222 69 11 chr12 10689006 10689194 -133097261 - LTR23 LTR ERV1 0 445 271 1775 155 0 50 chr12 10689889 10690211 -133096244 - AluJo SINE Alu -6 306 1 851 188 44 0 chr12 10690213 10690373 -133096082 - AluSg/x SINE Alu -24 286 120 692 146 0 0 chr12 10690504 10690607 -133095848 + AluSp/q SINE Alu 185 287 -26 284 167 197 0 chr12 10690936 10691002 -133095453 + L2 LINE L2 3232 3310 -3 38 0 0 0 chr12 10691175 10691213 -133095242 + AT_rich Low_complexity Low_complexity 1 38 0 772 169 0 0 chr12 10691218 10691336 -133095119 - FLAM_C SINE Alu -15 118 1 552 111 0 25 chr12 10691345 10691426 -133095029 - AluSg/x SINE Alu -15 295 217 246 178 0 79 chr12 10691909 10692010 -133094445 + AluY SINE Alu 1 93 -215 1903 174 96 64 chr12 10693722 10693998 -133092457 - LTR65 LTR ERV1 -154 515 214 1570 168 10 56 chr12 10693998 10694302 -133092153 + AluJb SINE Alu 1 290 -22 1903 174 96 64 chr12 10694302 10694524 -133091931 - LTR65 LTR ERV1 -455 214 1 406 207 0 0 chr12 10695069 10695156 -133091299 + Charlie5 DNA MER1_type 2499 2585 -27 374 203 38 13 chr12 10695348 10695427 -133091028 + MIR SINE MIR 30 110 -98 336 174 148 0 chr12 10695539 10695654 -133090801 - AluSg/x SINE Alu -6 296 165 667 165 43 0 chr12 10695767 10695882 -133090573 + MER41A LTR ERV1 435 554 0 353 115 16 16 chr12 10695887 10695948 -133090507 + AluJ/FRAM SINE Alu 232 292 -10 338 164 0 16 chr12 10695951 10696012 -133090443 + L1M LINE L1 5330 5389 -777 1967 144 3 7 chr12 10696013 10696311 -133090144 - AluJb SINE Alu -15 297 1 1765 138 39 3 chr12 10696378 10696683 -133089772 - L1PA8 LINE L1 -4 6168 5853 180 219 0 0 chr12 10696818 10696859 -133089596 + (TA)n Simple_repeat Simple_repeat 2 42 0 3520 95 8 4 chr12 10697081 10697554 -133088901 - L1PA10 LINE L1 0 6168 5694 346 266 47 23 chr12 10697566 10697694 -133088761 - LTR49 LTR ERV1 -362 233 103 1625 135 119 31 chr12 10697850 10698169 -133088286 - THE1C LTR MaLR -28 347 1 2459 126 49 20 chr12 10698248 10698653 -133087802 - L1PB3 LINE L1 -1 6153 5737 273 29 0 0 chr12 10698916 10698950 -133087505 + (TG)n Simple_repeat Simple_repeat 1 34 0 960 131 25 12 chr12 10699441 10699601 -133086854 - AluSg/x SINE Alu -1 309 148 315 274 75 48 chr12 10700213 10700400 -133086055 + MER5B DNA MER1_type 2 188 -1 233 209 163 35 chr12 10700707 10700793 -133085662 + MER46C DNA MER2_type 135 231 -107 494 149 230 0 chr12 10700856 10700943 -133085512 + U6 snRNA snRNA 1 107 0 1973 52 0 0 chr12 10700969 10701201 -133085254 - AluY SINE Alu -14 297 66 552 187 0 0 chr12 10701316 10701423 -133085032 - L1M4 LINE L1 -3191 2955 2849 3172 140 0 0 chr12 10701590 10702069 -133084386 + MST-int LTR MaLR 5 483 -1168 854 197 11 33 chr12 10702072 10702255 -133084200 + AluJ SINE Alu 5 183 -129 1189 214 0 18 chr12 10702704 10702989 -133083466 - AluSx SINE Alu -15 297 18 749 176 17 0 chr12 10703314 10703433 -133083022 + AluJ SINE Alu 176 296 -16 241 236 0 67 chr12 10703438 10703527 -133082928 - MER34B LTR ERV1 -448 117 35 356 299 103 20 chr12 10703646 10703850 -133082605 - MIR SINE MIR -11 251 31 592 107 0 0 chr12 10704103 10704178 -133082277 - AluS SINE Alu -237 76 2 1210 172 0 100 chr12 10704262 10704552 -133081903 + AluJo SINE Alu 39 299 -13 668 203 0 77 chr12 10704567 10704710 -133081745 + FLAM_C SINE Alu 5 136 -7 1410 177 55 19 chr12 10704978 10705249 -133081206 + AluJb SINE Alu 1 281 -31 1015 177 101 0 chr12 10705686 10705895 -133080560 - MER33 DNA MER1_type -93 231 2 1198 134 112 71 chr12 10705899 10706167 -133080288 - MER34C LTR ERV1 -8 577 299 1197 141 25 10 chr12 10706168 10706367 -133080088 - AluSq SINE Alu -19 294 93 276 248 80 58 chr12 10706528 10706620 -133079835 - MIR SINE MIR -72 190 93 2276 93 14 0 chr12 10706620 10706910 -133079545 + AluSg SINE Alu 1 294 -16 276 248 80 58 chr12 10706910 10706954 -133079501 - MIR SINE MIR -169 93 51 375 87 98 65 chr12 10710120 10710212 -133076243 - L1MA8 LINE L1 -3 6288 6194 2096 162 33 13 chr12 10710222 10710616 -133075839 - L1 LINE L1 -1961 4185 3784 1988 118 7 7 chr12 10710623 10710912 -133075543 - AluY SINE Alu -22 289 1 617 270 143 9 chr12 10712945 10713175 -133073280 + MIR SINE MIR 2 262 0 291 104 0 0 chr12 10713504 10713552 -133072903 + (CA)n Simple_repeat Simple_repeat 1 48 0 242 284 61 47 chr12 10713607 10713755 -133072700 + L2 LINE L2 3160 3309 -4 906 254 131 33 chr12 10713901 10714291 -133072164 - MLT2F LTR ERVL -179 484 57 559 319 68 20 chr12 10714781 10715029 -133071426 - MIR SINE MIR 0 262 3 9309 50 2 4 chr12 10715229 10716398 -133070057 - L1P LINE L1 -3678 2468 1303 1490 115 40 12 chr12 10717718 10717971 -133068484 - Tigger1 DNA MER2_type -702 1716 1457 1164 140 5 45 chr12 10718238 10718460 -133067995 - AluSg/x SINE Alu -25 287 75 744 293 86 19 chr12 10719061 10719710 -133066745 + L1ME3 LINE L1 5152 5856 -306 256 190 17 0 chr12 10720608 10720666 -133065789 + L2 LINE L2 1613 1671 -1643 261 154 0 90 chr12 10720681 10720759 -133065696 - LTR67 LTR ERVL -14 543 473 322 286 0 0 chr12 10720908 10720985 -133065470 - LTR67 LTR ERVL -380 177 101 609 218 0 0 chr12 10721158 10721268 -133065187 + FLAM_C SINE Alu 18 127 -16 211 250 0 0 chr12 10722159 10722203 -133064252 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 225 320 6 45 chr12 10723107 10723285 -133063170 + G-rich Low_complexity Low_complexity 2 172 0 201 276 17 17 chr12 10723481 10723539 -133062916 + G-rich Low_complexity Low_complexity 2 59 0 383 304 0 0 chr12 10723587 10723735 -133062720 + G-rich Low_complexity Low_complexity 1 148 0 22 0 0 0 chr12 10724635 10724657 -133061798 + GC_rich Low_complexity Low_complexity 1 22 0 5911 72 4 11 chr12 10724885 10725734 -133060721 + L1P3 LINE L1 1 947 -5199 22 0 0 0 chr12 10726370 10726392 -133060063 + AT_rich Low_complexity Low_complexity 1 22 0 402 314 85 52 chr12 10729782 10730419 -133056036 + L1M4 LINE L1 2266 2923 -3223 598 326 13 13 chr12 10733009 10733319 -133053136 - AluY SINE Alu 0 311 2 289 346 0 19 chr12 10733483 10733590 -133052865 + CT-rich Low_complexity Low_complexity 2 106 0 926 238 21 21 chr12 10736119 10736359 -133050096 - MIR SINE MIR -21 241 2 779 64 9 45 chr12 10737004 10737114 -133049341 - L1PA8 LINE L1 -2 6170 6065 27 73 0 0 chr12 10737608 10737663 -133048792 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr12 10738315 10738337 -133048118 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr12 10738548 10738575 -133047880 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10738819 10738841 -133047614 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 10739425 10739447 -133047008 + (T)n Simple_repeat Simple_repeat 1 22 0 27 0 0 0 chr12 10739462 10739489 -133046966 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10739567 10739589 -133046866 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 10739701 10739725 -133046730 + GC_rich Low_complexity Low_complexity 1 24 0 2146 122 0 0 chr12 10740241 10740527 -133045928 - AluSx SINE Alu -26 286 1 320 276 11 39 chr12 10740574 10740755 -133045700 - MLT1C LTR MaLR -5 462 287 180 115 0 0 chr12 10741004 10741030 -133045425 - L2 LINE L2 -97 3216 3191 464 253 145 32 chr12 10741090 10741311 -133045144 - HAL1 LINE L1 -550 1957 1712 433 280 0 0 chr12 10741348 10741448 -133045007 + 7SLRNA srpRNA srpRNA 211 310 -10 1791 181 3 19 chr12 10742093 10742402 -133044053 - AluJo SINE Alu -8 304 1 1465 153 28 0 chr12 10744023 10744272 -133042183 + L1MC1 LINE L1 6076 6331 -2 1065 111 0 0 chr12 10745439 10745583 -133040872 - AluSg/x SINE Alu -15 295 152 285 0 0 0 chr12 10745585 10745618 -133040837 - THE1B LTR MaLR -331 33 1 995 274 29 13 chr12 10745632 10746015 -133040440 - L1 LINE L1 -3094 3052 2664 686 157 14 51 chr12 10746725 10746942 -133039513 + LTR7 LTR ERV1 1 209 -241 226 298 175 9 chr12 10747963 10748077 -133038378 + L2 LINE L2 3139 3271 -1 608 215 65 15 chr12 10748446 10748646 -133037809 + AluSq SINE Alu 1 210 -103 1372 160 160 30 chr12 10748762 10749094 -133037361 - LTR28 LTR ERV1 -259 761 387 347 96 0 0 chr12 10749219 10749271 -133037184 + HERVH LTR ERV1 3942 3993 -3720 1476 109 0 5 chr12 10749273 10749494 -133036961 + HERVH LTR ERV1 4488 4707 -3006 218 203 136 0 chr12 10749513 10749572 -133036883 + MIR SINE MIR 186 252 -10 243 253 111 0 chr12 10749584 10749683 -133036772 + L1MC5 LINE L1 6993 7102 -859 185 302 0 38 chr12 10750190 10750243 -133036212 + L2 LINE L2 3244 3294 -19 205 267 199 30 chr12 10750303 10750434 -133036021 - MIR SINE MIR -64 198 46 230 305 17 0 chr12 10752278 10752337 -133034118 - L2 LINE L2 -16 3297 3238 180 0 0 0 chr12 10752566 10752586 -133033869 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr12 10752709 10752734 -133033721 + AT_rich Low_complexity Low_complexity 1 25 0 1312 71 10 10 chr12 10753312 10753510 -133032945 - LTR7 LTR ERV1 -2 448 251 198 0 0 0 chr12 10753552 10753574 -133032881 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 2094 94 4 0 chr12 10753640 10753917 -133032538 - AluSx SINE Alu -34 278 1 225 0 0 0 chr12 10754302 10754327 -133032128 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 283 264 14 27 chr12 10755398 10755546 -133030909 - L1MB3 LINE L1 -2 6181 6036 1176 284 53 2 chr12 10755709 10756296 -133030159 + ERVL LTR ERVL 3872 4564 -963 23 0 0 0 chr12 10756586 10756609 -133029846 + AT_rich Low_complexity Low_complexity 1 23 0 1786 151 0 14 chr12 10756611 10756889 -133029566 - AluJo SINE Alu -25 287 14 2027 90 54 4 chr12 10758484 10758820 -133027635 - THE1B-int LTR MaLR -1098 482 97 965 126 18 6 chr12 10758807 10758974 -133027481 - THE1B-int LTR MaLR -1411 169 1 * 587 175 15 22 chr12 10758978 10759115 -133027340 - THE1B LTR MaLR -4 360 225 409 289 92 65 chr12 10759996 10760256 -133026199 + HAL1 LINE L1 2241 2507 0 315 332 126 10 chr12 10760352 10760551 -133025904 + L2 LINE L2 2458 2679 -635 222 118 0 0 chr12 10760738 10760772 -133025683 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1436 159 4 4 chr12 10760985 10761236 -133025219 - L1PA16 LINE L1 -2 6164 5914 1922 100 0 0 chr12 10761394 10761643 -133024812 + AluSx SINE Alu 64 312 0 180 0 0 0 chr12 10762539 10762559 -133023896 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 846 224 12 6 chr12 10762575 10762745 -133023710 + FRAM SINE Alu 1 165 -11 2194 123 0 0 chr12 10763194 10763487 -133022968 - AluSx SINE Alu -18 294 2 406 333 14 0 chr12 10763513 10763654 -133022801 + MIR SINE MIR 118 260 -2 223 24 24 49 chr12 10763732 10763773 -133022682 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2237 88 0 3 chr12 10763775 10764059 -133022396 - AluSq SINE Alu -25 288 6 27 29 0 0 chr12 10764654 10764688 -133021767 + AT_rich Low_complexity Low_complexity 1 34 0 2147 142 0 0 chr12 10764930 10765233 -133021222 - AluSx SINE Alu -9 303 1 2146 115 52 25 chr12 10765244 10765609 -133020846 - THE1C LTR MaLR 0 375 1 10241 115 37 10 chr12 10765609 10767148 -133019307 - THE1C-int LTR MaLR 0 1580 1 1741 147 107 26 chr12 10767148 10767495 -133018960 - THE1C LTR MaLR 0 375 1 1752 180 3 0 chr12 10768035 10768324 -133018131 + AluSx SINE Alu 1 290 -22 266 356 18 61 chr12 10768556 10768796 -133017659 + L2 LINE L2 2795 3028 -285 537 212 209 7 chr12 10768796 10768956 -133017499 + LTR28 LTR ERV1 1 139 -286 273 188 16 0 chr12 10768969 10769033 -133017422 + LTR1 LTR ERV1 121 185 -600 * 2822 184 132 16 chr12 10769007 10769644 -133016811 + LTR28 LTR ERV1 308 1018 -2 272 319 33 91 chr12 10769655 10769842 -133016613 + L2 LINE L2 3048 3215 -98 2314 119 3 3 chr12 10769842 10770154 -133016301 - AluSp SINE Alu -1 312 1 272 319 33 91 chr12 10770154 10770242 -133016213 + L2 LINE L2 3215 3307 -6 888 127 23 12 chr12 10771220 10771393 -133015062 + CT-rich Low_complexity Low_complexity 4 178 0 2193 116 0 0 chr12 10771406 10771699 -133014756 - AluSx SINE Alu -8 304 12 2000 149 3 0 chr12 10771827 10772128 -133014327 - AluJb SINE Alu -10 302 1 242 180 0 0 chr12 10772327 10772377 -133014078 - L1MC5 LINE L1 -71 7890 7841 1117 219 35 60 chr12 10772655 10773108 -133013347 - L1MC5 LINE L1 -516 7445 7004 371 196 28 47 chr12 10773148 10773255 -133013200 - L1MC4 LINE L1 -11 8031 7927 1068 143 0 87 chr12 10773261 10773492 -133012963 - MER67D LTR ERV1 -294 220 10 245 182 0 30 chr12 10773503 10773569 -133012886 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 1812 154 8 17 chr12 10774264 10774615 -133011840 - L1MA7 LINE L1 -593 5698 5351 * 1888 149 53 3 chr12 10774612 10774968 -133011487 + L1MA7 LINE L1 5702 6075 -216 620 136 16 8 chr12 10774970 10775095 -133011360 + L1MA7 LINE L1 6166 6291 0 2351 89 20 0 chr12 10775100 10775402 -133011053 + AluSx SINE Alu 1 308 -4 27 29 0 0 chr12 10775644 10775678 -133010777 + AT_rich Low_complexity Low_complexity 1 34 0 2342 94 0 3 chr12 10776273 10776581 -133009874 + AluSq SINE Alu 6 312 -1 406 333 14 0 chr12 10776678 10776819 -133009636 - MIR SINE MIR -2 260 118 2189 123 0 0 chr12 10776845 10777138 -133009317 + AluSx SINE Alu 2 294 -18 846 224 12 6 chr12 10777587 10777757 -133008698 - FRAM SINE Alu -11 165 1 180 0 0 0 chr12 10777773 10777793 -133008662 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1922 100 0 0 chr12 10778689 10778938 -133007517 - AluSx SINE Alu 0 312 64 577 248 42 126 chr12 10779351 10779374 -133007081 + HsTC2 DNA Tc2 7 30 -1868 2335 129 33 6 chr12 10779374 10779739 -133006716 + THE1C LTR MaLR 1 375 0 577 248 42 126 chr12 10779739 10780180 -133006275 + HsTC2 DNA Tc2 30 1583 -315 23 33 0 0 chr12 10780235 10780265 -133006190 + AT_rich Low_complexity Low_complexity 1 30 0 504 0 0 0 chr12 10780299 10780355 -133006100 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2362 88 13 0 chr12 10780359 10780666 -133005789 - AluSx SINE Alu -1 311 1 369 335 32 2 chr12 10781161 10781329 -133005126 - MIR SINE MIR -59 149 23 234 0 0 0 chr12 10781970 10781996 -133004459 + (T)n Simple_repeat Simple_repeat 1 26 0 1106 118 0 6 chr12 10782215 10782404 -133004051 - AluSg/x SINE Alu 0 310 123 2142 127 0 0 chr12 10782901 10783193 -133003262 - AluSx SINE Alu -20 292 1 3581 122 13 6 chr12 10783239 10783762 -133002693 - MER1A DNA MER1_type 0 527 1 694 244 0 55 chr12 10783923 10784087 -133002368 + AluJo SINE Alu 1 155 -157 1091 201 0 0 chr12 10784102 10784296 -133002159 + AluJb SINE Alu 113 306 0 23 68 0 0 chr12 10784722 10784766 -133001689 + AT_rich Low_complexity Low_complexity 1 44 0 266 284 57 96 chr12 10784807 10785089 -133001366 - L1M4c LINE L1 -4907 1477 1207 3638 123 4 2 chr12 10785181 10785736 -133000719 - L1PA14 LINE L1 0 6161 5606 2296 105 3 51 chr12 10785737 10785915 -133000540 + L1P4 LINE L1 5021 5206 -955 2375 62 0 13 chr12 10785915 10786222 -133000233 + AluY SINE Alu 1 303 -8 2296 105 3 51 chr12 10786222 10786376 -133000079 + L1P4 LINE L1 5206 5366 -795 2261 101 3 19 chr12 10786376 10786693 -132999762 + AluSx SINE Alu 1 312 0 2296 105 3 51 chr12 10786693 10786974 -132999481 + L1P4 LINE L1 5366 5603 -558 3124 250 56 33 chr12 10787030 10789806 -132996649 - L1M4 LINE L1 -2904 3478 542 2155 137 7 0 chr12 10791465 10791772 -132994683 + AluSx SINE Alu 1 309 -3 274 286 86 9 chr12 10792051 10792261 -132994194 - L1MEc LINE L1 -4878 1518 1293 1089 84 0 0 chr12 10792304 10792435 -132994020 + AluSg SINE Alu 1 131 -179 2353 75 0 25 chr12 10792441 10792760 -132993695 + AluY SINE Alu 1 311 0 272 320 34 7 chr12 10792916 10793063 -132993392 + MER117 DNA MER1_type 43 193 -4 353 400 15 30 chr12 10793435 10793700 -132992755 + MIR SINE MIR 2 262 0 2362 161 67 18 chr12 10796326 10796465 -132989990 - L1MA9 LINE L1 -1 6311 6180 207 0 0 0 chr12 10796465 10796488 -132989967 + (TG)n Simple_repeat Simple_repeat 2 24 0 2362 161 67 18 chr12 10796488 10796859 -132989596 - L1MA9 LINE L1 -132 6180 5776 24 32 0 0 chr12 10796930 10796961 -132989494 + AT_rich Low_complexity Low_complexity 1 31 0 2245 106 0 0 chr12 10797263 10797555 -132988900 + AluSx SINE Alu 5 296 -16 29 47 0 0 chr12 10798365 10798408 -132988047 + AT_rich Low_complexity Low_complexity 1 43 0 180 219 0 0 chr12 10798460 10798501 -132987954 + (TA)n Simple_repeat Simple_repeat 2 42 0 1336 7 0 0 chr12 10798720 10798873 -132987582 - L1PA4 LINE L1 -2 6153 6001 269 347 42 26 chr12 10799194 10799384 -132987071 - L2 LINE L2 -1 3312 3120 368 279 18 0 chr12 10799538 10799649 -132986806 - MER94 DNA DNA -21 113 1 293 387 85 15 chr12 10799660 10799991 -132986464 - L2 LINE L2 -407 2907 2554 279 293 96 63 chr12 10800265 10800630 -132985825 - L1M4 LINE L1 -1800 4346 3970 2285 117 0 0 chr12 10800927 10801236 -132985219 - AluSx SINE Alu -3 309 1 22 70 0 0 chr12 10801608 10801651 -132984804 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 10802085 10802121 -132984334 + AT_rich Low_complexity Low_complexity 1 36 0 2382 88 0 0 chr12 10802571 10802865 -132983590 - AluSx SINE Alu -15 297 4 302 310 54 16 chr12 10803655 10803784 -132982671 + MIR SINE MIR 119 252 -10 21 57 0 0 chr12 10804602 10804637 -132981818 + AT_rich Low_complexity Low_complexity 1 35 0 2155 115 10 0 chr12 10805782 10806070 -132980385 + AluSx SINE Alu 1 291 -21 230 268 83 12 chr12 10806132 10806300 -132980155 + L1M4 LINE L1 2267 2446 -3700 352 257 44 9 chr12 10806359 10806472 -132979983 - L1MEd LINE L1 -5026 1093 977 2247 105 3 0 chr12 10806677 10806971 -132979484 - AluSx SINE Alu -17 295 1 420 275 135 62 chr12 10807582 10808018 -132978437 - L1ME3A LINE L1 -15 6155 5688 1240 92 0 0 chr12 10808303 10808466 -132977989 - AluSp SINE Alu -6 307 145 21 0 0 0 chr12 10808623 10808644 -132977811 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 10808895 10808919 -132977536 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr12 10809494 10809519 -132976936 + AT_rich Low_complexity Low_complexity 1 25 0 305 137 14 14 chr12 10809545 10809618 -132976837 - L1MC2 LINE L1 -1 6343 6271 276 151 226 0 chr12 10809620 10809673 -132976782 - HERVL68 LTR ERVL -1466 1571 1507 2523 218 32 7 chr12 10809741 10810310 -132976145 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10810568 10810592 -132975863 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2365 128 19 3 chr12 10810770 10811138 -132975317 - L1PA15 LINE L1 0 6165 5792 26 0 0 0 chr12 10812129 10812155 -132974300 + AT_rich Low_complexity Low_complexity 1 26 0 479 345 40 6 chr12 10812386 10812560 -132973895 - LTR33 LTR ERVL -309 212 33 1171 229 147 37 chr12 10812744 10813199 -132973256 + MLT1D LTR MaLR 1 505 0 27 0 0 0 chr12 10813900 10813927 -132972528 + AT_rich Low_complexity Low_complexity 1 27 0 2301 98 3 3 chr12 10814039 10814336 -132972119 - AluSp SINE Alu -15 298 2 273 340 86 41 chr12 10814456 10814747 -132971708 - L2 LINE L2 -206 3107 2804 410 296 123 21 chr12 10814771 10815014 -132971441 - LTR33A LTR ERVL 0 523 256 1381 144 92 0 chr12 10815066 10815316 -132971139 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10815316 10815338 -132971117 + AT_rich Low_complexity Low_complexity 1 22 0 329 259 41 81 chr12 10815379 10815576 -132970879 - LTR33A LTR ERVL -328 195 7 2133 98 3 34 chr12 10815674 10815996 -132970459 + AluSq SINE Alu 1 313 0 362 305 60 12 chr12 10816303 10816470 -132969985 + MER46C DNA MER2_type 159 333 -5 2358 75 14 0 chr12 10816476 10816769 -132969686 + AluSp SINE Alu 1 297 -16 252 351 81 22 chr12 10818121 10818306 -132968149 - MIR SINE MIR -18 244 49 874 158 0 0 chr12 10818455 10818588 -132967867 - FLAM_C SINE Alu 0 133 1 2165 103 10 0 chr12 10818638 10818930 -132967525 + AluSx SINE Alu 3 297 -15 2588 47 3 0 chr12 10819567 10819865 -132966590 + AluY SINE Alu 1 299 -12 1350 102 0 0 chr12 10819866 10820042 -132966413 + AluSg/x SINE Alu 126 301 -11 216 226 38 0 chr12 10820063 10820116 -132966339 + (TATG)n Simple_repeat Simple_repeat 3 57 0 360 289 100 28 chr12 10820298 10820478 -132965977 + MIR SINE MIR 60 252 -10 2190 102 7 0 chr12 10821562 10821857 -132964598 - AluSp SINE Alu -16 297 1 219 203 136 0 chr12 10822357 10822416 -132964039 + MIR SINE MIR 186 252 -10 270 253 111 0 chr12 10822428 10822527 -132963928 + L1MC5 LINE L1 6993 7102 -859 741 162 11 108 chr12 10822561 10822746 -132963709 + L1MD2 LINE L1 6083 6249 -110 13869 141 30 15 chr12 10822746 10823400 -132963055 - Tigger1 DNA MER2_type -1 2417 1774 3423 83 0 11 chr12 10823400 10823870 -132962585 - L1PA8 LINE L1 0 6172 5708 13869 141 30 15 chr12 10823870 10825596 -132960859 - Tigger1 DNA MER2_type -644 1774 1 2116 117 10 7 chr12 10826176 10826476 -132959979 - AluSx SINE Alu -11 301 1 482 257 9 92 chr12 10826620 10826838 -132959617 + L1ME3A LINE L1 5882 6081 -89 22 80 0 0 chr12 10827289 10827339 -132959116 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 10827778 10827799 -132958656 + AT_rich Low_complexity Low_complexity 1 21 0 2444 70 0 0 chr12 10828011 10828312 -132958143 + AluY SINE Alu 1 301 -10 228 200 0 0 chr12 10828524 10828569 -132957886 + MER39B LTR ERV1 609 653 0 37 23 0 0 chr12 10829182 10829226 -132957229 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10829281 10829327 -132957128 + AT_rich Low_complexity Low_complexity 1 46 0 3496 110 8 4 chr12 10830255 10830764 -132955691 + MER9 LTR ERVK 1 511 0 236 91 23 0 chr12 10830958 10831002 -132955453 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9954 142 49 8 chr12 10831160 10832852 -132953603 - Tigger1 DNA MER2_type -1 2417 657 1915 253 67 16 chr12 10832863 10833432 -132953023 + LTR26 LTR ERV1 6 603 0 * 3255 178 45 14 chr12 10833432 10834072 -132952383 - Tigger1 DNA MER2_type -1758 660 1 2263 205 62 87 chr12 10834203 10834915 -132951540 - LTR8A LTR ERV1 0 727 34 260 217 36 72 chr12 10835075 10835158 -132951297 - LTR48 LTR ERV1 -128 659 580 912 186 116 28 chr12 10835287 10835502 -132950953 - MER34C LTR ERV1 -351 234 1 1710 136 66 0 chr12 10836222 10836480 -132949975 - AluSp SINE Alu -38 275 1 493 349 64 22 chr12 10837120 10837481 -132948974 - LTR16C LTR ERVL -4 487 112 2304 54 19 26 chr12 10837657 10837970 -132948485 + AluY SINE Alu 1 311 0 276 30 0 0 chr12 10838030 10838063 -132948392 + (TG)n Simple_repeat Simple_repeat 2 34 0 521 312 35 0 chr12 10839210 10839383 -132947072 + MIR SINE MIR 82 260 -2 324 338 38 19 chr12 10840652 10840809 -132945646 + MIR SINE MIR 29 188 -74 1930 100 7 52 chr12 10841894 10842203 -132944252 - AluSq SINE Alu -18 295 1 1784 143 55 0 chr12 10842295 10842567 -132943888 + AluSx SINE Alu 1 287 -25 218 376 101 7 chr12 10842776 10842925 -132943530 + L2 LINE L2 2897 3059 -213 21 36 0 0 chr12 10843002 10843030 -132943425 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 10843718 10843755 -132942700 + AT_rich Low_complexity Low_complexity 1 37 0 2172 123 7 0 chr12 10843820 10844130 -132942325 - AluSq SINE Alu -1 312 1 2357 57 0 0 chr12 10844148 10844456 -132941999 - AluY SINE Alu 0 308 1 2396 68 7 0 chr12 10844486 10844794 -132941661 + AluY SINE Alu 1 310 -1 38 0 0 0 chr12 10845575 10845613 -132940842 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr12 10845952 10845984 -132940471 + AT_rich Low_complexity Low_complexity 1 32 0 21 95 0 0 chr12 10846765 10846828 -132939627 + AT_rich Low_complexity Low_complexity 1 63 0 1484 158 55 28 chr12 10846950 10847204 -132939251 - AluJo SINE Alu -51 261 1 39 0 0 0 chr12 10847377 10847416 -132939039 + AT_rich Low_complexity Low_complexity 1 39 0 2361 111 3 0 chr12 10847614 10847921 -132938534 + AluSx SINE Alu 1 308 -4 626 238 33 33 chr12 10847929 10848110 -132938345 - MLT1E1 LTR MaLR -469 185 5 1746 183 6 10 chr12 10848174 10848485 -132937970 - AluJb SINE Alu -2 310 1 186 43 0 0 chr12 10848549 10848572 -132937883 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 3652 43 2 0 chr12 10848572 10849038 -132937417 - L1PA8 LINE L1 -24 6148 5682 2397 126 114 7 chr12 10849097 10849502 -132936953 + MER83 LTR ERV1 1 448 0 2447 141 0 3 chr12 10849506 10849882 -132936573 - THE1C LTR MaLR 0 375 1 2414 66 3 3 chr12 10850346 10850650 -132935805 + AluY SINE Alu 1 304 -7 799 251 38 0 chr12 10850764 10850975 -132935480 - MER58A DNA MER1_type 0 224 6 1712 246 36 49 chr12 10851154 10851642 -132934813 + MLT1F LTR MaLR 1 483 -59 2268 104 7 7 chr12 10851642 10851951 -132934504 - AluSx SINE Alu -3 309 1 1712 246 36 49 chr12 10851951 10852011 -132934444 + MLT1F LTR MaLR 483 542 0 447 316 27 20 chr12 10852126 10852420 -132934035 + MLT1F-int LTR MaLR 286 581 -790 335 288 92 70 chr12 10852919 10853246 -132933209 + MLT1F-int LTR MaLR 1023 1356 -15 1574 249 47 38 chr12 10853263 10853796 -132932659 + MLT1F LTR MaLR 5 542 0 2102 132 0 0 chr12 10853833 10854129 -132932326 - AluSx SINE Alu -16 296 1 252 327 9 18 chr12 10854299 10854412 -132932043 - HAL1 LINE L1 -586 1921 1810 1367 284 69 33 chr12 10854465 10855281 -132931174 - L1ME3 LINE L1 -2 6160 5316 649 250 65 26 chr12 10855296 10855636 -132930819 - L1ME1 LINE L1 -9 6157 5805 2150 143 0 0 chr12 10855638 10855946 -132930509 - AluSx SINE Alu -4 308 1 2252 162 10 2 chr12 10856017 10856424 -132930031 - L1PA15 LINE L1 -1 6164 5755 824 243 45 94 chr12 10856445 10857071 -132929384 - L1ME1 LINE L1 -1669 4477 3883 6551 245 91 12 chr12 10857154 10858081 -132928374 - L1MB1 LINE L1 -1 5991 5139 1841 150 123 114 chr12 10858081 10858676 -132927779 - MER4A LTR ERV1 0 600 1 6551 245 91 12 chr12 10858676 10860520 -132925935 - L1MB1 LINE L1 -853 5139 2820 2152 132 30 33 chr12 10860520 10860885 -132925570 - THE1B LTR MaLR 0 364 1 6551 245 91 12 chr12 10860885 10861639 -132924816 - L1MB1 LINE L1 -3172 2820 2127 1458 302 72 25 chr12 10861648 10862314 -132924141 - L1MB1 LINE L1 -5194 697 1 244 188 59 0 chr12 10862326 10862411 -132924044 + (TA)n Simple_repeat Simple_repeat 1 90 0 543 358 45 11 chr12 10863937 10864378 -132922077 + L1M4 LINE L1 2274 2729 -3417 567 212 9 0 chr12 10864449 10864562 -132921893 - Tigger2 DNA MER2_type -10 2708 2595 3504 51 0 11 chr12 10864767 10865220 -132921235 - LTR7 LTR ERV1 -2 448 1 2385 72 48 13 chr12 10865220 10865597 -132920858 - HERVH LTR ERV1 0 7713 7324 1349 120 19 0 chr12 10865597 10865813 -132920642 - HERVH LTR ERV1 -1894 5819 5600 2982 144 0 3 chr12 10865814 10866410 -132920045 - HERVH LTR ERV1 -2564 5149 4488 3213 109 0 4 chr12 10866412 10866908 -132919547 - HERVH LTR ERV1 -3720 3993 3500 728 152 41 0 chr12 10866907 10867052 -132919403 - HERVH LTR ERV1 -4423 3290 3140 * 18905 93 29 11 chr12 10867046 10869980 -132916475 - HERVH LTR ERV1 -4726 2987 1 3413 53 4 11 chr12 10869982 10870433 -132916022 - LTR7 LTR ERV1 -2 448 1 1861 131 39 36 chr12 10871132 10871437 -132915018 - AluSx SINE Alu -6 306 1 1241 268 70 41 chr12 10871937 10872244 -132914211 - L1ME3 LINE L1 0 6162 5865 6455 91 12 24 chr12 10872244 10873342 -132913113 - L1PA11 LINE L1 -7 6167 5069 1241 268 70 41 chr12 10873342 10873616 -132912839 - L1ME3 LINE L1 -297 5865 5564 2820 128 9 9 chr12 10873667 10874126 -132912329 + LOR1a LTR ERV1 2 460 -37 257 231 104 22 chr12 10874224 10874358 -132912097 - L1M2 LINE L1 -853 5447 5303 359 268 3 86 chr12 10874438 10874575 -132911880 - L1ME3 LINE L1 -1540 4606 4506 2496 59 0 7 chr12 10874575 10874879 -132911576 - AluY SINE Alu -9 302 1 359 268 3 86 chr12 10874879 10875043 -132911412 - L1ME3 LINE L1 -1640 4506 4330 369 199 119 26 chr12 10875058 10875209 -132911246 - L1MA10 LINE L1 0 6334 6170 347 404 63 9 chr12 10875311 10875564 -132910891 - L1ME LINE L1 -5573 497 230 25 31 0 0 chr12 10875640 10875672 -132910783 + AT_rich Low_complexity Low_complexity 1 32 0 780 168 46 5 chr12 10875673 10875869 -132910586 - L1MA7 LINE L1 -7 6284 6081 1870 106 12 97 chr12 10876093 10876432 -132910023 - AluSq SINE Alu -3 310 1 1877 136 73 0 chr12 10876569 10876842 -132909613 - AluSx SINE Alu -19 293 1 448 274 137 49 chr12 10877060 10877345 -132909110 - L2 LINE L2 -16 3297 2988 283 298 0 11 chr12 10878897 10878991 -132907464 + MER94 DNA DNA 42 134 0 5872 120 136 123 chr12 10879347 10881022 -132905433 + pTR5 LTR ERV1 743 2438 0 373 302 79 8 chr12 10881931 10882057 -132904398 - MER5A DNA MER1_type 0 189 55 261 0 0 0 chr12 10882170 10882199 -132904256 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 215 51 89 chr12 10883818 10883897 -132902558 - MIR SINE MIR -80 182 107 198 345 81 11 chr12 10883963 10884050 -132902405 - L2 LINE L2 -55 3217 3125 2234 99 0 7 chr12 10885725 10886017 -132900438 - AluSg SINE Alu -16 294 5 1552 138 0 0 chr12 10886195 10886420 -132900035 - AluSg/x SINE Alu -3 307 83 25 0 0 0 chr12 10886726 10886751 -132899704 + AT_rich Low_complexity Low_complexity 1 25 0 702 250 26 26 chr12 10887095 10887287 -132899168 + MIR SINE MIR 37 228 -34 885 216 37 49 chr12 10888440 10888685 -132897770 - MLT1E LTR MaLR -16 577 336 524 162 153 28 chr12 10888775 10888921 -132897534 - MLT1E LTR MaLR -419 174 11 1119 219 22 4 chr12 10888991 10889260 -132897195 + L1MB3 LINE L1 5738 6011 -172 888 199 51 74 chr12 10889274 10889585 -132896870 - MLT2D LTR ERVL -19 395 92 2140 91 3 7 chr12 10889630 10889947 -132896508 + AluSq SINE Alu 1 316 0 1021 93 6 19 chr12 10889969 10890131 -132896324 + L1MB3 LINE L1 6006 6165 -18 1654 147 61 14 chr12 10890203 10890496 -132895959 - AluSx SINE Alu -5 307 1 318 193 0 48 chr12 10890687 10890770 -132895685 - L1MC5 LINE L1 -176 7785 7707 240 321 158 6 chr12 10891149 10891314 -132895141 - MIR SINE MIR -71 191 2 521 320 20 10 chr12 10892171 10892371 -132894084 - MIR SINE MIR -4 258 57 2020 100 38 0 chr12 10893213 10893502 -132892953 + AluSg SINE Alu 1 300 -10 312 247 106 0 chr12 10893897 10893982 -132892473 + MIR SINE MIR 74 167 -95 379 299 68 14 chr12 10894529 10894676 -132891779 + MIR SINE MIR 32 186 -76 228 24 73 0 chr12 10895143 10895184 -132891271 + T-rich Low_complexity Low_complexity 2 45 0 2319 108 0 0 chr12 10895200 10895505 -132890950 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 10895684 10895718 -132890737 + AT_rich Low_complexity Low_complexity 1 34 0 385 97 28 56 chr12 10896537 10896598 -132889857 - AluSc SINE Alu -2 297 237 1520 85 0 15 chr12 10896598 10896798 -132889657 - AluSc SINE Alu -112 197 1 2257 113 3 0 chr12 10897436 10897746 -132888709 - AluSq SINE Alu 0 313 3 1906 163 3 10 chr12 10897751 10898064 -132888391 - AluSx SINE Alu 0 312 2 939 100 14 14 chr12 10898207 10898347 -132888108 - AluSg/x SINE Alu -4 308 169 1144 103 0 0 chr12 10898558 10898713 -132887742 - AluSg/x SINE Alu -24 288 134 2289 90 0 0 chr12 10898713 10899013 -132887442 - AluSx SINE Alu -12 300 1 2224 101 0 10 chr12 10900050 10900348 -132886107 - AluSx SINE Alu -17 295 1 2511 54 0 0 chr12 10900559 10900856 -132885599 + AluY SINE Alu 1 297 -14 24 0 0 0 chr12 10901480 10901504 -132884951 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr12 10901602 10901638 -132884817 + AT_rich Low_complexity Low_complexity 1 36 0 1240 219 35 60 chr12 10902172 10902625 -132883830 - L1MC5 LINE L1 -516 7445 7004 400 196 28 47 chr12 10902665 10902772 -132883683 - L1MC4 LINE L1 -11 8031 7927 1170 134 0 88 chr12 10902778 10903016 -132883439 - MER67D LTR ERV1 -294 220 4 245 182 0 30 chr12 10903020 10903086 -132883369 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 216 0 0 0 chr12 10903357 10903381 -132883074 + (T)n Simple_repeat Simple_repeat 1 24 0 1926 150 8 25 chr12 10903778 10904137 -132882318 - L1MA7 LINE L1 -588 5703 5351 * 2004 149 53 3 chr12 10904134 10904490 -132881965 + L1MA7 LINE L1 5702 6075 -216 636 136 16 8 chr12 10904492 10904617 -132881838 + L1MA7 LINE L1 6166 6291 0 2167 89 0 7 chr12 10904627 10904935 -132881520 + AluSq SINE Alu 7 312 0 1048 86 6 19 chr12 10904957 10905119 -132881336 + L1MB3 LINE L1 6006 6165 -18 1615 146 61 17 chr12 10905191 10905486 -132880969 - AluSx SINE Alu -4 308 1 337 193 0 48 chr12 10905677 10905760 -132880695 - L1MC5 LINE L1 -176 7785 7707 182 200 109 18 chr12 10906080 10906135 -132880320 - MIR SINE MIR -71 191 132 244 321 158 6 chr12 10906139 10906304 -132880151 - MIR SINE MIR -71 191 2 194 316 20 41 chr12 10907711 10907809 -132878646 - L2 LINE L2 -1343 1971 1876 32 0 0 0 chr12 10908116 10908148 -132878307 + AT_rich Low_complexity Low_complexity 1 32 0 469 265 43 16 chr12 10909044 10909188 -132877267 + MIR SINE MIR 68 212 -50 201 214 143 0 chr12 10909732 10909788 -132876667 + MIR SINE MIR 57 120 -142 201 211 0 0 chr12 10910483 10910535 -132875920 + GA-rich Low_complexity Low_complexity 1 52 0 285 98 0 0 chr12 10910828 10910869 -132875586 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 1497 149 0 131 chr12 10910874 10911202 -132875253 - AluJb SINE Alu -16 286 2 293 295 78 36 chr12 10911414 10911607 -132874848 - L2 LINE L2 0 3313 3113 24 53 0 0 chr12 10912094 10912132 -132874323 + AT_rich Low_complexity Low_complexity 1 38 0 300 314 81 8 chr12 10912137 10912261 -132874194 - L2 LINE L2 -14 3299 3167 189 337 145 40 chr12 10912370 10912619 -132873836 - L2 LINE L2 -353 2961 2687 1589 122 7 52 chr12 10912861 10913132 -132873323 + AluJb SINE Alu 1 259 -53 23 33 0 0 chr12 10914554 10914584 -132871871 + AT_rich Low_complexity Low_complexity 1 30 0 36 53 0 0 chr12 10915545 10915602 -132870853 + AT_rich Low_complexity Low_complexity 1 57 0 2109 117 7 0 chr12 10915602 10915902 -132870553 + AluSx SINE Alu 1 302 -10 313 247 106 0 chr12 10916297 10916382 -132870073 + MIR SINE MIR 74 167 -95 381 299 68 14 chr12 10916929 10917076 -132869379 + MIR SINE MIR 32 186 -76 228 24 73 0 chr12 10917543 10917584 -132868871 + T-rich Low_complexity Low_complexity 2 45 0 2297 108 0 0 chr12 10917600 10917905 -132868550 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 10918084 10918118 -132868337 + AT_rich Low_complexity Low_complexity 1 34 0 385 97 28 56 chr12 10918937 10918998 -132867457 - AluSc SINE Alu -2 297 237 1476 85 5 15 chr12 10918998 10919197 -132867258 - AluSc SINE Alu -112 197 1 2257 113 3 0 chr12 10919835 10920145 -132866310 - AluSq SINE Alu 0 313 3 767 202 17 17 chr12 10920150 10920323 -132866132 - AluSg/x SINE Alu 0 312 140 3522 113 54 13 chr12 10920432 10921091 -132865364 - HERVH LTR ERV1 -7093 620 1 2548 95 71 9 chr12 10921093 10921513 -132864942 - LTR7 LTR ERV1 -2 448 3 486 108 0 36 chr12 10921642 10921708 -132864747 - L1M1 LINE L1 -557 5743 5679 3055 147 16 0 chr12 10921708 10922219 -132864236 + L1MA4 LINE L1 5777 6296 -4 486 108 0 36 chr12 10922219 10922235 -132864220 - L1M1 LINE L1 -621 5679 5664 515 238 79 58 chr12 10922644 10922833 -132863622 + MIR SINE MIR 24 216 -46 329 265 106 45 chr12 10922913 10923177 -132863278 - L1 LINE L1 -1506 4640 4361 21 36 0 0 chr12 10923205 10923233 -132863222 + AT_rich Low_complexity Low_complexity 1 28 0 344 83 150 0 chr12 10923658 10923718 -132862737 + MADE1 DNA Mariner 2 70 -10 278 75 0 0 chr12 10923718 10923758 -132862697 + MADE1 DNA Mariner 40 79 -1 335 302 147 70 chr12 10925702 10925998 -132860457 + L2 LINE L2 793 1125 -2189 1247 207 50 47 chr12 10925998 10926325 -132860130 + AluJo SINE Alu 1 312 0 335 302 147 70 chr12 10926325 10926402 -132860053 + L2 LINE L2 1125 1195 -2119 1232 312 70 36 chr12 10926496 10927404 -132859051 + L2 LINE L2 1475 2413 -901 455 259 53 103 chr12 10927430 10927640 -132858815 - MIR SINE MIR -11 251 32 2372 132 28 8 chr12 10927640 10927997 -132858458 + THE1B LTR MaLR 1 364 0 10890 104 27 1 chr12 10927997 10929538 -132856917 + THE1B-int LTR MaLR 1 1580 0 2335 116 30 25 chr12 10929538 10929900 -132856555 + THE1B LTR MaLR 1 364 0 455 259 53 103 chr12 10929900 10929950 -132856505 - MIR SINE MIR -227 35 2 418 335 19 12 chr12 10930529 10930690 -132855765 + L2 LINE L2 3151 3312 -1 234 191 0 44 chr12 10930696 10930764 -132855691 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 201 74 0 0 chr12 10931697 10931724 -132854731 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 948 138 12 31 chr12 10933126 10933286 -132853169 + AluSg/x SINE Alu 156 312 0 3147 163 25 33 chr12 10935465 10936072 -132850383 - L1PB4 LINE L1 -10 6146 5545 194 150 25 0 chr12 10936906 10936946 -132849509 + (TATG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 10937129 10937152 -132849303 + AT_rich Low_complexity Low_complexity 1 23 0 929 148 448 20 chr12 10937779 10938136 -132848319 - MER4B LTR ERV1 -99 511 2 8776 135 50 24 chr12 10938137 10939341 -132847114 - MER4B-int LTR ERV1 0 6758 5440 2095 134 0 0 chr12 10939341 10939632 -132846823 + AluSx SINE Alu 1 291 -21 8776 135 50 24 chr12 10939632 10940549 -132845906 - MER4B-int LTR ERV1 -1318 5440 4549 185 59 59 0 chr12 10940549 10940583 -132845872 + T-rich Low_complexity Low_complexity 2 37 0 1360 119 0 0 chr12 10940608 10940801 -132845654 - AluSq SINE Alu 0 313 121 803 78 9 0 chr12 10940801 10940917 -132845538 + THE1C-int LTR MaLR 1463 1579 -1 839 132 16 8 chr12 10940918 10941047 -132845408 + THE1C LTR MaLR 1 130 -245 7593 27 2 0 chr12 10941047 10942189 -132844266 + L1PA4 LINE L1 5012 6155 0 10747 146 25 3 chr12 10942189 10943968 -132842487 + Tigger1 DNA MER2_type 602 2418 0 213 374 87 0 chr12 10943980 10944095 -132842360 - MIR SINE MIR -136 126 2 298 297 159 33 chr12 10944515 10944697 -132841758 - MIR SINE MIR 0 262 58 226 291 23 12 chr12 10945417 10945503 -132840952 - MIR SINE MIR -108 154 68 626 341 57 43 chr12 10946698 10947135 -132839320 - L2 LINE L2 -34 3279 2837 23 54 0 0 chr12 10947208 10947245 -132839210 + AT_rich Low_complexity Low_complexity 1 37 0 306 206 0 0 chr12 10947617 10947690 -132838765 + (CA)n Simple_repeat Simple_repeat 2 74 0 395 314 40 40 chr12 10948571 10948797 -132837658 + L2 LINE L2 3088 3313 0 351 0 0 0 chr12 10951459 10951498 -132834957 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2408 60 0 7 chr12 10954701 10955000 -132831455 - AluY SINE Alu -14 297 1 2624 33 0 0 chr12 10955260 10955560 -132830895 - AluY SINE Alu -10 301 2 1860 168 7 7 chr12 10956452 10956756 -132829699 + AluJb SINE Alu 2 305 -7 3958 176 45 1 chr12 10956821 10957582 -132828873 - LTR1B LTR ERV1 0 826 33 1357 65 0 0 chr12 10957597 10957767 -132828688 - L1PA5 LINE L1 -12 6142 5973 313 104 0 0 chr12 10957770 10957818 -132828637 - LTR1B LTR ERV1 -778 48 1 242 292 72 77 chr12 10957939 10958148 -132828307 - L2 LINE L2 -2 3311 3104 370 297 34 0 chr12 10958370 10958488 -132827967 - MIR SINE MIR -123 139 18 2100 310 83 66 chr12 10958900 10959593 -132826862 - L2 LINE L2 -778 2536 1857 2532 68 0 0 chr12 10959593 10959904 -132826551 + AluY SINE Alu 1 311 0 2100 310 83 66 chr12 10959904 10960911 -132825544 - L2 LINE L2 -1457 1857 806 524 212 23 15 chr12 10960922 10961054 -132825401 + MER3 DNA MER1_type 1 133 -76 182 61 0 30 chr12 10961055 10961088 -132825367 + (TTTAA)n Simple_repeat Simple_repeat 1 32 0 484 313 81 26 chr12 10961167 10961439 -132825016 - L2 LINE L2 -2521 793 507 754 191 148 39 chr12 10961714 10961971 -132824484 + LTR12 LTR ERV1 1 285 -429 292 221 0 0 chr12 10961972 10962040 -132824415 + LTR30 LTR ERV1 553 620 -102 705 153 24 0 chr12 10962040 10962164 -132824291 + LTR12 LTR ERV1 355 481 -233 257 192 0 0 chr12 10962739 10962791 -132823664 - MLT1D LTR MaLR 0 505 454 324 64 0 0 chr12 10962974 10963021 -132823434 + (TC)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr12 10963021 10963054 -132823401 + (CA)n Simple_repeat Simple_repeat 1 33 0 366 299 28 9 chr12 10964279 10964406 -132822049 - MIR SINE MIR -62 146 23 1274 51 0 0 chr12 10965220 10965377 -132821078 - L1PA3 LINE L1 -3 6152 5996 183 236 42 56 chr12 10966797 10966869 -132819586 - MER5A DNA MER1_type 0 189 119 27 96 0 0 chr12 10967098 10967181 -132819274 + AT_rich Low_complexity Low_complexity 1 83 0 418 277 43 18 chr12 10968816 10968962 -132817493 - MIR SINE MIR -63 145 33 539 230 48 62 chr12 10968997 10969206 -132817249 + Charlie2a DNA MER1_type 1466 1671 -1191 348 219 73 0 chr12 10969219 10969342 -132817113 + Charlie2a DNA MER1_type 2729 2860 -2 27 62 0 0 chr12 10969376 10969424 -132817031 + AT_rich Low_complexity Low_complexity 1 48 0 1146 214 20 3 chr12 10969454 10969749 -132816706 - L1MA4 LINE L1 -6 6294 5995 28 0 0 0 chr12 10971116 10971144 -132815311 + AT_rich Low_complexity Low_complexity 1 28 0 1817 155 7 7 chr12 10971984 10972274 -132814181 - AluJb SINE Alu -22 290 1 2429 137 14 28 chr12 10973657 10974079 -132812376 + MSTA LTR MaLR 1 416 -12 354 342 6 31 chr12 10974088 10974249 -132812206 + MER5B DNA MER1_type 5 161 -17 572 232 34 57 chr12 10974546 10974723 -132811732 - MER5B DNA MER1_type -1 177 5 511 140 9 19 chr12 10975202 10975309 -132811146 + CT-rich Low_complexity Low_complexity 4 109 0 26 0 0 0 chr12 10975332 10975358 -132811097 + AT_rich Low_complexity Low_complexity 1 26 0 861 201 67 128 chr12 10975531 10975823 -132810632 - MLT1A1 LTR MaLR 0 365 101 1730 183 0 32 chr12 10975823 10976135 -132810320 - AluJo SINE Alu -10 302 1 861 201 67 128 chr12 10976135 10976231 -132810224 - MLT1A1 LTR MaLR -264 101 1 182 333 62 31 chr12 10977472 10977568 -132808887 - MIR SINE MIR -64 144 46 24 0 0 0 chr12 10977641 10977665 -132808790 + AT_rich Low_complexity Low_complexity 1 24 0 2414 182 26 28 chr12 10977926 10978469 -132807986 - L1MA10 LINE L1 -7 6327 5786 835 188 0 17 chr12 10978469 10978645 -132807810 + L1MA10 LINE L1 5614 5786 -514 3796 47 2 2 chr12 10979054 10979521 -132806934 + L1PA8 LINE L1 5699 6165 -7 2603 87 52 0 chr12 10979553 10979899 -132806556 + THE1B LTR MaLR 1 364 0 207 0 0 0 chr12 10980338 10980361 -132806094 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 667 167 10 0 chr12 10980361 10980562 -132805893 + CT-rich Low_complexity Low_complexity 1 203 0 282 266 53 0 chr12 10981469 10981563 -132804892 + MIR SINE MIR 80 178 -84 298 159 0 72 chr12 10981986 10982055 -132804400 + L1M3 LINE L1 5713 5776 -392 180 0 0 0 chr12 10982059 10982079 -132804376 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 306 0 0 0 chr12 10982078 10982112 -132804343 + (TA)n Simple_repeat Simple_repeat 1 34 0 1535 197 69 54 chr12 10982411 10982779 -132803676 - L1MC2 LINE L1 -311 6033 5655 3533 113 4 4 chr12 10982779 10983290 -132803165 + MER9 LTR ERVK 1 511 0 1535 197 69 54 chr12 10983290 10983368 -132803087 - L1MC2 LINE L1 -689 5655 5580 331 208 42 25 chr12 10983378 10983498 -132802957 - MER52C LTR ERV1 -803 475 354 478 207 0 0 chr12 10984449 10984531 -132801924 + AluJ/FLAM SINE Alu 3 84 -228 1319 170 8 0 chr12 10984806 10985047 -132801408 + L1MC/D LINE L1 5389 5631 -713 500 128 12 0 chr12 10985048 10985134 -132801321 + MER52C LTR ERV1 1192 1278 0 1115 280 82 102 chr12 10985136 10985192 -132801263 + L2 LINE L2 1532 1588 -1726 2469 65 0 3 chr12 10985192 10985499 -132800956 - AluY SINE Alu -5 306 1 1115 280 82 102 chr12 10985499 10986468 -132799987 + L2 LINE L2 1588 2536 -778 454 291 33 4 chr12 10986875 10987036 -132799419 + MIR SINE MIR 2 166 -68 4112 148 57 22 chr12 10987456 10988215 -132798240 - LTR1 LTR ERV1 0 785 1 1552 181 36 23 chr12 10988407 10988711 -132797744 - AluJb SINE Alu -2 310 3 192 103 0 0 chr12 10989704 10989733 -132796722 - L2 LINE L2 0 3313 3285 3802 160 79 31 chr12 10989738 10990563 -132795892 - MER6 DNA MER2_type 0 865 2 1764 176 0 0 chr12 10992621 10992926 -132793529 - AluSx SINE Alu 0 309 5 2462 64 0 0 chr12 10993260 10993557 -132792898 - AluY SINE Alu -14 297 1 2062 112 6 16 chr12 10993768 10994080 -132792375 + AluSx SINE Alu 1 309 -3 455 263 102 44 chr12 10995308 10995513 -132790942 - L2 LINE L2 -1 3312 3096 252 0 0 0 chr12 10996419 10996447 -132790008 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 40 0 0 chr12 10996471 10996496 -132789959 + (TA)n Simple_repeat Simple_repeat 2 26 0 2026 115 4 0 chr12 10996506 10996784 -132789671 - AluSc SINE Alu -30 279 1 23 0 0 0 chr12 10997153 10997176 -132789279 + AT_rich Low_complexity Low_complexity 1 23 0 815 345 29 31 chr12 10997237 10997684 -132788771 + L2 LINE L2 2834 3279 -34 183 354 63 0 chr12 10998887 10998966 -132787489 + MIR SINE MIR 68 151 -111 245 374 0 0 chr12 10999033 10999116 -132787339 + L2 LINE L2 3160 3242 -30 456 323 40 20 chr12 10999628 10999829 -132786626 + MIR SINE MIR 58 262 0 1975 157 16 30 chr12 11000393 11000756 -132785699 - Tigger1 DNA MER2_type 0 2418 2061 2789 7 0 3 chr12 11000756 11001061 -132785394 + AluYb8 SINE Alu 1 304 -14 270 105 0 0 chr12 11001061 11001099 -132785356 + AluJ/F(R)AM SINE Alu 134 171 -131 617 89 44 0 chr12 11001099 11001189 -132785266 + AluSc SINE Alu 202 295 -14 12610 141 17 13 chr12 11001189 11003251 -132783204 - Tigger1 DNA MER2_type -348 2070 1 251 279 39 29 chr12 11003261 11003365 -132783090 + MIR SINE MIR 147 251 -11 2352 88 0 0 chr12 11003728 11004025 -132782430 + AluSq SINE Alu 1 297 -16 26 0 0 0 chr12 11004027 11004053 -132782402 + AT_rich Low_complexity Low_complexity 1 26 0 323 243 97 56 chr12 11004053 11004197 -132782258 + LTR33 LTR ERVL 3 152 -369 468 231 26 0 chr12 11004292 11004409 -132782046 + LTR33 LTR ERVL 400 519 -2 404 285 108 19 chr12 11004826 11004984 -132781471 + MLT1J2 LTR MaLR 279 450 0 1470 214 120 37 chr12 11006025 11006483 -132779972 - MLT1D LTR MaLR -9 496 1 25 0 0 0 chr12 11007648 11007673 -132778782 + AT_rich Low_complexity Low_complexity 1 25 0 2380 93 0 6 chr12 11008580 11008891 -132777564 + AluSx SINE Alu 1 309 -3 227 208 19 19 chr12 11009033 11009086 -132777369 + L1ME4a LINE L1 5613 5665 -2143 606 102 61 0 chr12 11009247 11009345 -132777110 + L1PA16 LINE L1 6054 6157 -9 28 29 0 0 chr12 11010131 11010166 -132776289 + AT_rich Low_complexity Low_complexity 1 35 0 487 325 35 43 chr12 11010285 11010630 -132775825 + L1ME4a LINE L1 5744 6085 -36 1735 130 30 47 chr12 11011350 11011651 -132774804 - AluSx SINE Alu -16 296 1 1042 261 54 39 chr12 11011957 11012439 -132774016 + L1MD1 LINE L1 4715 5203 -943 639 130 148 0 chr12 11012447 11012555 -132773900 + AluJb SINE Alu 1 124 -188 4309 189 22 3 chr12 11012560 11013484 -132772971 + L1MD1 LINE L1 5188 6128 -114 264 208 31 31 chr12 11013483 11013579 -132772876 + L1MC4a LINE L1 5829 5924 -1884 * 2009 129 26 3 chr12 11016540 11016842 -132769613 + AluSq SINE Alu 1 309 -4 29 0 0 0 chr12 11018796 11018825 -132767630 + AT_rich Low_complexity Low_complexity 1 29 0 379 246 87 14 chr12 11019180 11019318 -132767137 + MIR SINE MIR 109 256 -6 219 231 0 19 chr12 11019654 11019706 -132766749 + L2 LINE L2 3255 3305 -8 2202 162 10 12 chr12 11021848 11022249 -132764206 + MER57A LTR ERV1 4 403 0 192 280 103 19 chr12 11022366 11022473 -132763982 - MIR SINE MIR -56 206 91 229 347 66 0 chr12 11024594 11024715 -132761740 + MIR SINE MIR 97 225 -37 2335 166 39 12 chr12 11024782 11025197 -132761258 + MSTB LTR MaLR 1 426 0 234 267 0 89 chr12 11025330 11025431 -132761024 + MIR SINE MIR 41 132 -76 293 47 23 0 chr12 11025443 11025486 -132760969 + (TC)n Simple_repeat Simple_repeat 1 44 0 191 296 0 0 chr12 11025561 11025605 -132760850 + L2 LINE L2 3137 3180 -92 1612 201 0 3 chr12 11025605 11025894 -132760561 + AluJb SINE Alu 1 288 -24 580 110 0 22 chr12 11026883 11026974 -132759481 - AluJb SINE Alu -32 280 192 22 70 0 0 chr12 11026974 11027017 -132759438 + AT_rich Low_complexity Low_complexity 1 43 0 213 395 0 0 chr12 11028605 11028681 -132757774 - L2 LINE L2 -16 3256 3181 180 0 0 0 chr12 11029286 11029306 -132757149 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 195 378 25 17 chr12 11029471 11029590 -132756865 + MIR SINE MIR 137 256 -6 287 238 0 0 chr12 11029622 11029685 -132756770 + MER117 DNA MER1_type 44 106 -91 194 155 35 0 chr12 11030123 11030181 -132756274 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 248 184 0 0 chr12 11030182 11030220 -132756235 + Alu SINE Alu 244 281 -21 859 330 145 22 chr12 11030691 11031414 -132755041 + L2 LINE L2 2347 3156 -157 375 302 9 0 chr12 11031415 11031521 -132754934 + MER81 DNA DNA 1 107 -7 2085 153 113 8 chr12 11031521 11031912 -132754543 + MSTB1 LTR MaLR 1 432 0 211 211 39 39 chr12 11031948 11032000 -132754455 + L2 LINE L2 3183 3234 -79 847 129 0 0 chr12 11032352 11032468 -132753987 + FLAM_C SINE Alu 1 116 -27 283 234 109 0 chr12 11032491 11032555 -132753900 - MER33 DNA MER1_type -252 72 2 385 132 440 0 chr12 11032920 11033011 -132753444 + AluYb8 SINE Alu 1 131 -177 237 98 0 0 chr12 11034731 11034772 -132751683 + (CA)n Simple_repeat Simple_repeat 2 42 0 3948 240 85 43 chr12 11035315 11036043 -132750412 - L1ME1 LINE L1 -5 6161 5464 2241 100 0 0 chr12 11036043 11036334 -132750121 - AluSq SINE Alu -21 292 2 3948 240 85 43 chr12 11036334 11036512 -132749943 - L1ME1 LINE L1 -702 5464 5295 2170 102 24 3 chr12 11036512 11036805 -132749650 - AluSx SINE Alu -13 299 1 3948 240 85 43 chr12 11036805 11038266 -132748189 - L1ME1 LINE L1 -871 5295 3896 1539 186 0 40 chr12 11038266 11038567 -132747888 - AluJb SINE Alu -23 289 1 2263 98 3 0 chr12 11038572 11038869 -132747586 - AluSx SINE Alu -14 298 1 3948 240 85 43 chr12 11038869 11039078 -132747377 - L1ME1 LINE L1 -2273 3893 3694 2309 74 7 0 chr12 11039078 11039377 -132747078 - AluSg SINE Alu -9 301 1 3948 240 85 43 chr12 11039377 11039643 -132746812 - L1ME1 LINE L1 -2472 3694 3193 403 305 91 85 chr12 11039692 11040210 -132746245 + L1PA13 LINE L1 924 1444 -6130 4261 227 45 24 chr12 11040634 11041063 -132745392 + L1PA13 LINE L1 2244 2663 -4921 2030 126 0 7 chr12 11041063 11041376 -132745079 - AluSx SINE Alu 0 311 1 4261 227 45 24 chr12 11041376 11041736 -132744719 + L1PA13 LINE L1 2663 3014 -4570 2175 107 13 0 chr12 11041736 11042034 -132744421 + AluSq SINE Alu 1 302 -11 4261 227 45 24 chr12 11042034 11042548 -132743907 + L1PA13 LINE L1 3014 3582 -4002 2178 121 0 3 chr12 11042552 11042849 -132743606 + AluSx SINE Alu 1 296 -16 1210 128 0 0 chr12 11042856 11043028 -132743427 + AluSg/x SINE Alu 141 312 0 5192 216 32 99 chr12 11043028 11043651 -132742804 + L1P LINE L1 4570 5233 -2351 838 161 8 0 chr12 11043651 11043781 -132742674 + FLAM_C SINE Alu 1 131 -12 5192 216 32 99 chr12 11043781 11044859 -132741596 + L1P LINE L1 5233 6277 -1307 2167 122 0 0 chr12 11044861 11045156 -132741299 + AluSx SINE Alu 3 297 -15 375 302 9 0 chr12 11045600 11045706 -132740749 + MER81 DNA DNA 1 107 -7 2085 153 113 8 chr12 11045706 11046097 -132740358 + MSTB1 LTR MaLR 1 432 0 211 211 39 39 chr12 11046133 11046185 -132740270 + L2 LINE L2 3183 3234 -79 24 0 0 29 chr12 11046518 11046537 -132739918 + AT_rich Low_complexity Low_complexity 1 20 -14 1878 146 16 13 chr12 11046537 11046846 -132739609 + AluSx SINE Alu 1 310 -2 24 0 0 29 chr12 11046846 11046861 -132739594 + AT_rich Low_complexity Low_complexity 20 34 0 388 244 67 0 chr12 11046861 11046951 -132739504 - FLAM_A SINE Alu -13 120 25 1879 152 0 48 chr12 11047025 11047341 -132739114 + AluSx SINE Alu 2 302 -10 253 330 78 39 chr12 11047703 11047882 -132738573 + MER5A DNA MER1_type 1 186 -3 221 313 9 71 chr12 11048484 11048596 -132737859 + MIR SINE MIR 1 105 -157 16331 164 43 29 chr12 11048632 11050466 -132735989 + L1PBa LINE L1 2 1807 -5055 2078 138 0 13 chr12 11050466 11050770 -132735685 - AluSx SINE Alu -12 300 1 16331 164 43 29 chr12 11050770 11051184 -132735271 + L1PBa LINE L1 1807 2213 -4649 982 115 8 184 chr12 11051184 11051418 -132735037 + 7SK RNA RNA 1 193 0 16331 164 43 29 chr12 11051418 11051538 -132734917 + L1PBa LINE L1 2213 2330 -4532 2434 93 0 0 chr12 11051538 11051849 -132734606 + AluY SINE Alu 1 311 0 16331 164 43 29 chr12 11051849 11052194 -132734261 + L1PBa LINE L1 2330 2668 -4194 423 0 0 0 chr12 11052194 11052241 -132734214 + (CA)n Simple_repeat Simple_repeat 2 48 0 16331 164 43 29 chr12 11052241 11053921 -132732534 + L1PBa LINE L1 2668 4466 -2396 2177 114 3 0 chr12 11053921 11054220 -132732235 + AluSx SINE Alu 1 300 -12 16331 164 43 29 chr12 11054220 11054467 -132731988 + L1PBa LINE L1 4466 4708 -2154 291 71 0 0 chr12 11054469 11054511 -132731944 + (TA)n Simple_repeat Simple_repeat 2 43 0 263 204 0 0 chr12 11054644 11054693 -132731762 + MIR SINE MIR 191 239 -23 21 0 0 0 chr12 11054706 11054727 -132731728 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 11054800 11054821 -132731634 + (CA)n Simple_repeat Simple_repeat 2 22 0 1890 163 0 0 chr12 11054943 11055231 -132731224 - AluJb SINE Alu -24 288 1 234 91 0 0 chr12 11055582 11055615 -132730840 + (ATG)n Simple_repeat Simple_repeat 2 34 0 991 174 63 28 chr12 11055796 11055831 -132730624 - MER33 DNA MER1_type -2261 324 292 189 0 0 0 chr12 11055831 11055852 -132730603 + (TA)n Simple_repeat Simple_repeat 2 22 0 991 174 63 28 chr12 11055852 11056069 -132730386 - MER33 DNA MER1_type -2293 292 63 856 121 0 0 chr12 11056069 11056185 -132730270 + FLAM_C SINE Alu 1 116 -27 288 234 109 0 chr12 11056208 11056272 -132730183 - MER33 DNA MER1_type -252 72 2 351 133 456 0 chr12 11056638 11056728 -132729727 + AluYb8 SINE Alu 1 131 -177 237 98 0 0 chr12 11058449 11058490 -132727965 + (CA)n Simple_repeat Simple_repeat 2 42 0 4293 241 92 38 chr12 11059033 11059761 -132726694 - L1ME1 LINE L1 -5 6230 5543 2248 100 0 0 chr12 11059761 11060052 -132726403 - AluSq SINE Alu -21 292 2 4293 241 92 38 chr12 11060052 11060217 -132726238 - L1ME1 LINE L1 -692 5543 5388 2183 108 23 3 chr12 11060217 11060523 -132725932 - AluSx SINE Alu 0 312 1 4293 241 92 38 chr12 11060523 11061958 -132724497 - L1ME1 LINE L1 -847 5388 4033 1542 186 0 49 chr12 11061958 11062286 -132724169 - AluJb SINE Alu 0 312 1 2280 98 3 0 chr12 11062291 11062588 -132723867 - AluSx SINE Alu -14 298 1 4293 241 92 38 chr12 11062588 11062797 -132723658 - L1ME1 LINE L1 -2205 4030 3834 2328 74 7 0 chr12 11062797 11063096 -132723359 - AluSg SINE Alu -9 301 1 4293 241 92 38 chr12 11063096 11063362 -132723093 - L1ME1 LINE L1 -2401 3834 3262 395 301 93 87 chr12 11063411 11063929 -132722526 + L1PA16 LINE L1 924 1444 -6130 983 272 86 22 chr12 11064353 11064724 -132721731 + L1PA16 LINE L1 2244 2638 -4943 812 173 127 0 chr12 11064845 11065018 -132721437 + L1 LINE L1 3603 3797 -2349 835 151 8 0 chr12 11065021 11065147 -132721308 + FLAM_C SINE Alu 5 131 -12 6557 181 12 23 chr12 11065160 11066662 -132719793 + L1PA16 LINE L1 5213 6695 -909 2382 110 0 0 chr12 11066662 11066971 -132719484 + AluSq SINE Alu 1 309 -4 6557 181 12 23 chr12 11066971 11067862 -132718593 + L1PA16 LINE L1 6695 7595 -9 1671 242 51 127 chr12 11067876 11068441 -132718014 - L1ME1 LINE L1 -2944 3271 2665 934 112 62 12 chr12 11068441 11068602 -132717853 - AluSg/x SINE Alu -9 303 135 1671 242 51 127 chr12 11068602 11068615 -132717840 - L1ME1 LINE L1 -3550 2665 2653 1923 116 43 0 chr12 11068615 11068892 -132717563 - AluSq SINE Alu -24 289 1 1671 242 51 127 chr12 11068892 11069424 -132717031 - L1ME1 LINE L1 -3562 2653 2082 2446 77 3 3 chr12 11069424 11069735 -132716720 - AluY SINE Alu 0 311 1 1671 242 51 127 chr12 11069735 11070257 -132716198 - L1ME1 LINE L1 -4133 2082 1196 249 204 0 19 chr12 11070258 11070312 -132716143 + CT-rich Low_complexity Low_complexity 1 53 0 2382 69 23 3 chr12 11070318 11070655 -132715800 - AluY SINE Alu 0 343 1 2811 278 65 19 chr12 11070741 11071825 -132714630 - L1ME1 LINE L1 -5227 1169 37 517 244 160 6 chr12 11072232 11072388 -132714067 + MER58C DNA MER1_type 36 215 0 604 339 45 4 chr12 11072435 11072677 -132713778 + MIR SINE MIR 8 259 -3 2182 128 3 0 chr12 11073162 11073466 -132712989 - AluSx SINE Alu -7 305 1 22 94 0 0 chr12 11073695 11073759 -132712696 + AT_rich Low_complexity Low_complexity 1 64 0 2000 149 3 0 chr12 11074261 11074556 -132711899 - AluSx SINE Alu -16 296 1 227 286 114 21 chr12 11074710 11074850 -132711605 - L2 LINE L2 0 3313 3161 22 0 0 0 chr12 11074964 11074986 -132711469 + AT_rich Low_complexity Low_complexity 1 22 0 298 323 71 32 chr12 11075307 11075462 -132710993 - MIR SINE MIR -43 219 59 207 0 0 0 chr12 11075585 11075608 -132710847 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1796 135 60 0 chr12 11075610 11075876 -132710579 - AluSx SINE Alu -26 286 5 2016 134 7 10 chr12 11075879 11076186 -132710269 - AluSx SINE Alu -6 306 1 869 132 0 0 chr12 11076823 11076952 -132709503 + AluSg/x SINE Alu 164 292 -20 190 289 144 29 chr12 11077998 11078102 -132708353 + MER5A DNA MER1_type 72 187 -2 2435 75 0 0 chr12 11078350 11078643 -132707812 + AluSg SINE Alu 1 293 -17 881 390 13 84 chr12 11079680 11079988 -132706467 + AluSq SINE Alu 1 286 -17 225 0 0 0 chr12 11079995 11080020 -132706435 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 2264 79 10 10 chr12 11080127 11080419 -132706036 - AluY SINE Alu -19 292 1 2018 144 7 3 chr12 11080956 11081261 -132705194 - AluSx SINE Alu -6 306 1 21 36 0 0 chr12 11081594 11081622 -132704833 + AT_rich Low_complexity Low_complexity 1 28 0 2423 87 3 3 chr12 11081700 11082011 -132704444 + AluSp SINE Alu 2 312 -1 223 193 0 53 chr12 11082094 11082151 -132704304 + MIR SINE MIR 75 128 -134 2013 109 3 7 chr12 11082157 11082450 -132704005 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 11082632 11082671 -132703784 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 11082731 11082753 -132703702 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 11082993 11083096 -132703359 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 11083309 11083440 -132703015 - MIR3 SINE MIR -20 188 48 413 302 0 34 chr12 11083733 11083882 -132702573 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 11085261 11085284 -132701171 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 11086295 11086582 -132699873 + AluSp SINE Alu 1 296 -17 1928 142 7 0 chr12 11087025 11087327 -132699128 + AluJb SINE Alu 1 304 -8 1579 72 0 45 chr12 11087329 11087550 -132698905 + AluSc SINE Alu 1 211 -98 561 77 4 7 chr12 11087596 11087831 -132698624 + AluY SINE Alu 1 295 -14 1991 119 3 16 chr12 11087922 11088234 -132698221 - AluSq SINE Alu -5 308 1 1975 111 4 0 chr12 11088364 11088661 -132697794 - AluSx SINE Alu 0 311 14 2000 149 3 0 chr12 11089217 11089518 -132696937 + AluJb SINE Alu 1 302 -10 285 104 60 15 chr12 11089632 11089646 -132696809 + GA-rich Low_complexity Low_complexity 3 15 -57 2191 116 0 0 chr12 11089646 11089939 -132696516 + AluSx SINE Alu 12 304 -8 285 104 60 15 chr12 11089939 11089991 -132696464 + GA-rich Low_complexity Low_complexity 15 72 0 955 105 11 28 chr12 11089991 11090172 -132696283 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2308 115 3 3 chr12 11091188 11091500 -132694955 + AluSp SINE Alu 1 312 -1 223 193 0 53 chr12 11091583 11091640 -132694815 + MIR SINE MIR 75 128 -134 2013 109 3 7 chr12 11091646 11091939 -132694516 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 11092121 11092160 -132694295 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 11092220 11092242 -132694213 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 11092482 11092585 -132693870 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 11092798 11092929 -132693526 - MIR3 SINE MIR -20 188 48 413 302 0 34 chr12 11093222 11093371 -132693084 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 11094750 11094773 -132691682 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 11095786 11096073 -132690382 + AluSp SINE Alu 1 296 -17 2304 106 3 0 chr12 11096928 11097231 -132689224 - AluSx SINE Alu -8 304 1 2405 79 13 0 chr12 11097258 11097563 -132688892 - AluSq SINE Alu -2 311 3 1606 221 95 42 chr12 11097614 11097660 -132688795 - MLT2B1 LTR ERVL 0 520 478 2188 171 6 0 chr12 11097660 11098004 -132688451 - MER7A DNA MER2_type -1 345 2 1606 221 95 42 chr12 11098004 11098451 -132688004 - MLT2B1 LTR ERVL -42 478 1 216 258 65 32 chr12 11098516 11098578 -132687877 - MER5B DNA MER1_type -10 168 105 229 299 13 13 chr12 11098703 11098780 -132687675 - MER5B DNA MER1_type -101 77 1 2256 123 0 0 chr12 11098960 11099269 -132687186 + AluSg SINE Alu 1 309 -1 1322 147 10 10 chr12 11099269 11099473 -132686982 + AluSg/x SINE Alu 83 286 -24 872 167 20 7 chr12 11099738 11099888 -132686567 - MER6 DNA MER2_type 0 865 714 2325 109 3 0 chr12 11099892 11100203 -132686252 - AluSx SINE Alu 0 312 1 282 242 62 81 chr12 11100203 11100317 -132686138 + MIR SINE MIR 92 204 -58 2412 74 19 10 chr12 11100317 11100626 -132685829 + AluSx SINE Alu 1 312 0 282 242 62 81 chr12 11100626 11100672 -132685783 + MIR SINE MIR 204 249 -13 3665 204 67 16 chr12 11102415 11103178 -132683277 + MER21B LTR ERV1 1 802 -61 1214 86 0 0 chr12 11103436 11103587 -132682868 - AluSg SINE Alu -159 151 1 1456 139 186 31 chr12 11104200 11104340 -132682115 + AluSx SINE Alu 1 118 -184 2217 104 7 0 chr12 11104340 11104629 -132681826 + AluSp SINE Alu 5 295 -18 1456 139 186 31 chr12 11104629 11104746 -132681709 + AluSx SINE Alu 118 298 -4 38 22 0 0 chr12 11104848 11104893 -132681562 + AT_rich Low_complexity Low_complexity 1 45 0 2187 110 3 3 chr12 11105675 11105975 -132680480 - AluSg1 SINE Alu -9 300 1 1817 135 10 34 chr12 11105986 11106160 -132680295 - AluSg SINE Alu -19 291 125 186 43 0 0 chr12 11106160 11106183 -132680272 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1817 135 10 34 chr12 11106183 11106304 -132680151 - AluSg SINE Alu -185 125 3 2048 134 0 13 chr12 11106392 11106699 -132679756 + AluSx SINE Alu 1 303 -9 1652 136 100 0 chr12 11106778 11107058 -132679397 + AluSx SINE Alu 1 308 -4 438 20 0 0 chr12 11107064 11107115 -132679340 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 264 167 0 0 chr12 11107108 11107156 -132679299 + GA-rich Low_complexity Low_complexity 1 48 0 * 1945 113 0 82 chr12 11107162 11107312 -132679143 + AluSx SINE Alu 3 113 -199 2649 45 3 0 chr12 11107312 11107622 -132678833 + AluY SINE Alu 1 311 0 1945 113 0 82 chr12 11107622 11107799 -132678656 + AluSx SINE Alu 113 303 -9 2517 73 3 0 chr12 11107917 11108218 -132678237 + AluSq SINE Alu 1 302 -11 260 257 69 69 chr12 11109775 11109799 -132676656 + MIR SINE MIR 88 111 -151 2098 128 0 0 chr12 11109799 11110096 -132676359 - AluSq SINE Alu -16 297 1 260 257 69 69 chr12 11110096 11110215 -132676240 + MIR SINE MIR 110 231 -31 2372 86 0 0 chr12 11111206 11111535 -132674920 + AluSq SINE Alu 1 329 0 2368 97 0 0 chr12 11111615 11111923 -132674532 + AluSg SINE Alu 3 310 0 2160 122 7 0 chr12 11112226 11112522 -132673933 + AluSx SINE Alu 1 298 -14 472 310 50 76 chr12 11112530 11112661 -132673794 - L2 LINE L2 -423 2891 2758 1748 164 10 7 chr12 11112661 11112965 -132673490 - AluSq SINE Alu -8 305 1 472 310 50 76 chr12 11112965 11113375 -132673080 - L2 LINE L2 -556 2758 2364 256 360 53 16 chr12 11113543 11113732 -132672723 - L2 LINE L2 -938 2376 2181 2613 53 0 0 chr12 11114063 11114364 -132672091 + L1PA4 LINE L1 5852 6152 -3 21 0 0 0 chr12 11114364 11114385 -132672070 + AT_rich Low_complexity Low_complexity 1 21 0 2265 108 0 0 chr12 11114407 11114704 -132671751 + AluSx SINE Alu 2 298 -14 1940 123 28 0 chr12 11115022 11115183 -132671272 - AluSx SINE Alu -19 293 119 240 35 0 0 chr12 11115183 11115212 -132671243 + (TG)n Simple_repeat Simple_repeat 2 30 0 1940 123 28 0 chr12 11115212 11115335 -132671120 - AluSx SINE Alu -193 119 1 774 80 0 0 chr12 11115355 11115455 -132671000 + MER4E LTR ERV1 1 100 -666 423 0 0 0 chr12 11115799 11115846 -132670609 + (TG)n Simple_repeat Simple_repeat 2 48 0 1704 108 9 0 chr12 11115872 11116103 -132670352 - AluSx SINE Alu -79 233 1 738 304 55 22 chr12 11116472 11116978 -132669477 - MLT1G LTR MaLR -1 594 2 2297 80 3 0 chr12 11116983 11117292 -132669163 + AluSp SINE Alu 1 310 0 299 372 22 15 chr12 11117625 11117762 -132668693 + L2 LINE L2 2950 3087 -185 2017 131 3 3 chr12 11117837 11118148 -132668307 + AluSq SINE Alu 1 311 0 2185 162 14 16 chr12 11118384 11118748 -132667707 - MLT1A1 LTR MaLR 0 365 3 1255 240 79 43 chr12 11118949 11119394 -132667061 + MER74B LTR ERVL 69 529 -93 1657 210 91 23 chr12 11119683 11120112 -132666343 + MLT1C LTR MaLR 2 459 -8 2222 117 0 0 chr12 11120159 11120449 -132666006 + AluSx SINE Alu 1 290 -22 471 325 62 29 chr12 11120622 11120896 -132665559 + HAL1 LINE L1 365 647 -1860 2364 93 0 10 chr12 11120964 11121277 -132665178 - AluSx SINE Alu -2 310 1 863 247 129 38 chr12 11121279 11121753 -132664702 + HAL1 LINE L1 785 1301 -1206 540 201 74 113 chr12 11121826 11121865 -132664590 + HAL1 LINE L1 1546 1585 -922 2529 64 0 0 chr12 11121865 11122163 -132664292 - AluY SINE Alu -13 298 1 540 201 74 113 chr12 11122163 11122257 -132664198 + HAL1 LINE L1 1585 1669 -838 2295 104 0 7 chr12 11122257 11122556 -132663899 - AluSx SINE Alu -15 297 1 540 201 74 113 chr12 11122556 11122650 -132663805 + HAL1 LINE L1 1669 1765 -742 514 280 71 16 chr12 11122770 11122952 -132663503 - MIR SINE MIR -59 203 12 719 218 93 96 chr12 11122976 11123330 -132663125 + HAL1 LINE L1 2155 2507 0 2230 92 10 0 chr12 11123348 11123643 -132662812 + AluSp SINE Alu 3 300 -13 2209 118 7 0 chr12 11123818 11124114 -132662341 - AluSx SINE Alu -14 298 1 1441 157 34 4 chr12 11124141 11124403 -132662052 - AluSq SINE Alu -2 311 42 4400 122 42 34 chr12 11124534 11124767 -132661688 + MER4E LTR ERV1 35 265 -514 1963 108 7 24 chr12 11124767 11125079 -132661376 + AluSq SINE Alu 1 307 0 4400 122 42 34 chr12 11125079 11125582 -132660873 + MER4E LTR ERV1 265 778 -1 2336 77 3 0 chr12 11125941 11126274 -132660181 - AluSp SINE Alu 0 334 1 25802 44 40 3 chr12 11126805 11130051 -132656404 - L1P LINE L1 -2162 3984 617 796 42 0 0 chr12 11130045 11130140 -132656315 - L1P LINE L1 -6048 98 4 * 4640 191 13 26 chr12 11130141 11131554 -132654901 - L1M2 LINE L1 -481 5810 4398 9735 97 9 3 chr12 11131554 11133721 -132652734 - L1PA8A LINE L1 0 6131 3951 533 283 6 0 chr12 11133973 11134150 -132652305 - L1P3 LINE L1 -5058 2526 2349 1636 33 0 0 chr12 11134151 11134334 -132652121 - L1PA5 LINE L1 0 6154 5972 427 0 0 0 chr12 11134334 11134380 -132652075 + L1PA5 LINE L1 5898 5943 -211 * 3730 157 10 11 chr12 11134378 11135024 -132651431 - L1MDb LINE L1 -4735 2263 990 314 174 151 0 chr12 11135033 11135119 -132651336 + L1MDb LINE L1 2259 2357 -5230 207 0 0 0 chr12 11135194 11135217 -132651238 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 656 116 0 0 chr12 11135226 11135312 -132651143 - AluSg/x SINE Alu -23 289 204 1804 116 0 8 chr12 11135312 11135562 -132650893 - AluSx SINE Alu -64 248 1 346 229 34 16 chr12 11135923 11136043 -132650412 + L1MDb LINE L1 2342 2465 -5109 3426 206 82 9 chr12 11136045 11136815 -132649640 + L1MD1 LINE L1 5417 6242 0 447 332 21 0 chr12 11136807 11136997 -132649458 + L1MDb LINE L1 2992 3185 -4580 * 24 41 0 20 chr12 11137130 11137150 -132649305 + AT_rich Low_complexity Low_complexity 1 20 -28 3324 115 4 10 chr12 11137150 11137630 -132648825 - L1PB1 LINE L1 0 6151 5675 24 41 0 20 chr12 11137630 11137658 -132648797 + AT_rich Low_complexity Low_complexity 20 48 0 899 47 0 9 chr12 11137658 11137765 -132648690 - L1PA8 LINE L1 -14 6158 6053 8998 134 30 5 chr12 11137765 11138767 -132647688 - L1P3 LINE L1 -5031 1430 383 255 31 0 0 chr12 11138767 11138799 -132647656 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8998 134 30 5 chr12 11138799 11139187 -132647268 - L1P3 LINE L1 -6078 383 6 707 227 86 20 chr12 11139421 11139738 -132646717 + MSTD LTR MaLR 3 389 -7 3545 129 34 49 chr12 11140015 11140629 -132645826 - MER4E LTR ERV1 -174 605 1 4310 138 24 5 chr12 11141126 11141758 -132644697 - LTR9B LTR ERV1 0 644 1 2112 150 92 28 chr12 11141761 11142194 -132644261 - MER65C LTR ERV1 0 461 1 527 170 30 10 chr12 11142194 11142294 -132644161 - MLT1A2 LTR MaLR -272 102 1 3264 60 21 11 chr12 11142339 11142858 -132643597 + LTR10C LTR ERV1 1 591 0 682 209 111 81 chr12 11142858 11143140 -132643315 + HERVI LTR ERV1 2 289 -6360 189 0 0 0 chr12 11143143 11143164 -132643291 + (A)n Simple_repeat Simple_repeat 1 21 0 303 229 48 29 chr12 11143307 11143412 -132643043 + HERVI LTR ERV1 504 610 -6039 282 152 22 0 chr12 11143404 11143450 -132643005 + HERVI LTR ERV1 975 1021 -5628 * 3458 107 31 2 chr12 11143531 11144010 -132642445 + LTR15 LTR ERV1 1 493 0 6890 152 77 43 chr12 11144010 11145619 -132640836 + HERV15 LTR ERV1 1 1387 -7039 2985 254 30 12 chr12 11145609 11146266 -132640189 + HERV15 LTR ERV1 1704 2372 -6054 * 3060 202 28 14 chr12 11146239 11146819 -132639636 + HERV15 LTR ERV1 3495 4082 -4344 * 4202 222 4 22 chr12 11146810 11147644 -132638811 + HERV15 LTR ERV1 4208 5026 -3400 3540 121 2 2 chr12 11147626 11148130 -132638325 + HERV15 LTR ERV1 8231 8734 -1 * 3444 98 21 0 chr12 11148130 11148597 -132637858 + LTR15 LTR ERV1 1 477 -16 223 258 0 15 chr12 11148620 11148686 -132637769 + GA-rich Low_complexity Low_complexity 3 67 0 303 202 0 0 chr12 11149063 11149147 -132637308 + GA-rich Low_complexity Low_complexity 1 84 0 1121 131 104 0 chr12 11149211 11149432 -132637023 + HERVI LTR ERV1 1919 2162 -4734 316 214 0 0 chr12 11149981 11150065 -132636390 + GA-rich Low_complexity Low_complexity 1 84 0 3527 111 46 5 chr12 11150129 11150732 -132635723 + HERVI LTR ERV1 1919 2546 -4350 4224 294 42 38 chr12 11150908 11152603 -132633852 + HERVI LTR ERV1 4363 6064 -585 293 363 47 13 chr12 11152620 11152854 -132633601 + HERVI LTR ERV1 7543 7784 -1 3419 47 13 1 chr12 11152858 11153376 -132633079 + LTR10C LTR ERV1 1 591 0 1624 247 33 58 chr12 11153376 11153898 -132632557 - MLT1-int LTR MaLR -53 1682 1174 496 252 0 0 chr12 11153944 11154055 -132632400 - MLT1-int LTR MaLR -944 791 681 234 170 0 21 chr12 11154179 11154226 -132632229 - MLT1-int LTR MaLR -635 736 691 27 0 0 0 chr12 11154511 11154538 -132631917 + AT_rich Low_complexity Low_complexity 1 27 0 204 97 0 0 chr12 11154803 11154834 -132631621 + (TG)n Simple_repeat Simple_repeat 1 31 0 1854 173 3 0 chr12 11155123 11155430 -132631025 - AluSx SINE Alu -4 308 1 1877 125 61 7 chr12 11155498 11155795 -132630660 - AluSq SINE Alu 0 313 1 383 362 26 18 chr12 11156404 11156633 -132629822 + MIR SINE MIR 18 248 -14 741 323 21 10 chr12 11157055 11157343 -132629112 + L1ME1 LINE L1 310 600 -5796 947 259 83 4 chr12 11157343 11157802 -132628653 + L1ME1 LINE L1 2739 3233 -2982 1528 255 77 85 chr12 11157813 11157921 -132628534 + L1ME1 LINE L1 5434 5541 -694 2053 124 0 0 chr12 11157921 11158233 -132628222 - AluSx SINE Alu 0 312 1 1528 255 77 85 chr12 11158233 11158924 -132627531 + L1ME1 LINE L1 5541 6228 -7 218 224 103 0 chr12 11158959 11159017 -132627438 + MIR SINE MIR 101 164 -98 1591 133 4 0 chr12 11159987 11160212 -132626243 + AluSx SINE Alu 1 226 -86 982 116 0 0 chr12 11160212 11160350 -132626105 + AluSg/x SINE Alu 163 300 -10 2548 40 3 0 chr12 11161176 11161479 -132624976 - AluY SINE Alu -7 304 1 2153 246 64 76 chr12 11161550 11162336 -132624119 + L1M2b LINE L1 1 776 -6433 2104 161 28 28 chr12 11162320 11162742 -132623713 + L1M2b LINE L1 2759 3180 -4029 * 1210 311 38 46 chr12 11162742 11163302 -132623153 + L1MA5 LINE L1 23 577 -6988 4005 211 29 24 chr12 11163303 11165009 -132621446 + L1MA5 LINE L1 2582 4304 -3261 * 5635 155 39 13 chr12 11165003 11166475 -132619980 + L1MA5 LINE L1 5686 7221 -498 309 26 0 0 chr12 11166475 11166513 -132619942 + (CA)n Simple_repeat Simple_repeat 1 38 0 5635 155 39 13 chr12 11166513 11167025 -132619430 + L1MA5 LINE L1 7221 7718 -1 335 274 82 77 chr12 11167111 11167451 -132619004 - L1MC4a LINE L1 -1926 5882 5541 30 0 0 0 chr12 11167856 11167886 -132618569 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr12 11168587 11168615 -132617840 + AT_rich Low_complexity Low_complexity 1 28 0 1923 113 88 0 chr12 11168676 11168959 -132617496 - AluSx SINE Alu -4 308 1 528 118 0 0 chr12 11169124 11169209 -132617246 - L1PA14 LINE L1 -2 6159 6075 24 53 0 0 chr12 11169215 11169253 -132617202 + AT_rich Low_complexity Low_complexity 1 38 0 192 311 72 78 chr12 11169442 11169622 -132616833 - MIR SINE MIR -50 212 34 265 88 0 0 chr12 11170309 11170343 -132616112 + U2 snRNA snRNA 1 34 -154 185 81 0 54 chr12 11170464 11170501 -132615954 + (CAT)n Simple_repeat Simple_repeat 2 36 0 210 71 0 0 chr12 11171028 11171056 -132615399 + (CA)n Simple_repeat Simple_repeat 2 29 0 302 122 20 0 chr12 11171314 11171363 -132615092 + MADE1 DNA Mariner 1 50 -30 299 299 41 18 chr12 11171415 11171636 -132614819 + L1M4 LINE L1 4574 4799 -1347 25 0 0 0 chr12 11171789 11171814 -132614641 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 11171930 11171964 -132614491 + AT_rich Low_complexity Low_complexity 1 34 0 314 319 0 18 chr12 11172107 11172220 -132614235 - L2 LINE L2 -4 3309 3199 2263 105 0 7 chr12 11172225 11172529 -132613926 - AluSq SINE Alu -11 302 1 190 357 0 71 chr12 11175225 11175365 -132611090 - L2 LINE L2 -6 3266 3137 316 120 0 0 chr12 11175738 11175788 -132610667 + LTR5 LTR ERVK 1 50 -919 935 224 53 94 chr12 11175789 11176297 -132610158 + LTR5 LTR ERVK 483 969 0 552 250 52 23 chr12 11176722 11176894 -132609561 + LTR41 LTR ERVL 1 177 -596 1434 165 69 0 chr12 11177361 11177621 -132608834 + AluSx SINE Alu 16 293 -19 241 264 7 88 chr12 11178403 11178551 -132607904 + L1M4 LINE L1 105 240 -6302 2380 148 14 50 chr12 11178856 11179357 -132607098 - L1MA6 LINE L1 0 6300 5818 279 0 0 0 chr12 11179470 11179501 -132606954 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 11179619 11179642 -132606813 + AT_rich Low_complexity Low_complexity 1 23 0 644 288 51 20 chr12 11179757 11180197 -132606258 + L1M4 LINE L1 1026 1475 -5067 1773 156 9 32 chr12 11180368 11180714 -132605741 - L1MA7 LINE L1 -158 6133 5796 22 0 0 0 chr12 11180726 11180748 -132605707 + AT_rich Low_complexity Low_complexity 1 22 0 11941 25 3 0 chr12 11180748 11182961 -132603494 - L1PA3 LINE L1 0 6155 3978 546 293 67 0 chr12 11183120 11183284 -132603171 - MIR SINE MIR -48 214 40 2095 95 0 30 chr12 11183290 11183595 -132602860 + AluSx SINE Alu 5 300 -12 794 213 6 29 chr12 11183679 11183853 -132602602 - AluJo/FRAM SINE Alu -11 301 132 1509 201 4 0 chr12 11183854 11184128 -132602327 - AluJo SINE Alu -7 305 31 1470 168 0 15 chr12 11184364 11184626 -132601829 - AluJo SINE Alu -54 258 1 2510 148 66 48 chr12 11184715 11185305 -132601150 - L1MB8 LINE L1 -5 6173 5573 334 291 96 49 chr12 11185627 11186119 -132600336 + L1M4 LINE L1 4106 4620 -1526 1012 266 11 7 chr12 11186128 11186406 -132600049 - L1MB7 LINE L1 -11 6173 5895 1518 169 24 56 chr12 11186902 11187194 -132599261 - MER44D DNA MER2_type -1883 604 268 1444 84 75 0 chr12 11187194 11187408 -132599047 - MER30 DNA MER1_type 0 230 1 1518 169 24 56 chr12 11187408 11187452 -132599003 - MER44D DNA MER2_type -2219 268 224 21 0 0 0 chr12 11187579 11187600 -132598855 + AT_rich Low_complexity Low_complexity 1 21 0 230 238 0 16 chr12 11188568 11188631 -132597824 + L1MA10 LINE L1 2 63 -6967 4381 210 59 7 chr12 11188637 11190020 -132596435 + L1MA10 LINE L1 5783 7290 -4 1600 157 68 0 chr12 11190051 11190344 -132596111 + L1MB2 LINE L1 5817 6129 -42 1753 185 71 19 chr12 11190379 11190747 -132595708 + L1MC1 LINE L1 5902 6288 -45 592 251 50 32 chr12 11190749 11190968 -132595487 + L1M4 LINE L1 4761 4983 -1163 4340 161 56 5 chr12 11190975 11191931 -132594524 + L1PA15 LINE L1 5161 6160 -5 29 0 0 0 chr12 11192026 11192055 -132594400 + AT_rich Low_complexity Low_complexity 1 29 0 430 291 157 22 chr12 11192131 11192495 -132593960 + L1 LINE L1 2227 2639 -3507 232 179 45 0 chr12 11192665 11192732 -132593723 - Charlie5 DNA MER1_type -2490 122 53 322 312 65 0 chr12 11192761 11192931 -132593524 + L1 LINE L1 2778 2958 -3188 306 289 78 58 chr12 11193007 11193546 -132592909 + L1 LINE L1 3080 3629 -2517 388 329 101 39 chr12 11193613 11193969 -132592486 + L1 LINE L1 3763 4140 -2006 1807 145 65 6 chr12 11193970 11194307 -132592148 + L1 LINE L1 4578 4934 -1212 2659 202 13 13 chr12 11194327 11194861 -132591594 - MER44D DNA MER2_type -1 604 16 27 73 0 0 chr12 11195112 11195167 -132591288 + AT_rich Low_complexity Low_complexity 1 55 0 1531 292 72 8 chr12 11195696 11196206 -132590249 + L1MDb LINE L1 14 556 -5853 555 280 111 30 chr12 11196238 11196570 -132589885 + L1ME3A LINE L1 5804 6162 -8 310 285 62 36 chr12 11196563 11196756 -132589699 + L1ME3A LINE L1 5689 5886 -284 * 22 0 0 0 chr12 11197058 11197080 -132589375 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 11197614 11197637 -132588818 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 11199026 11199054 -132587401 + AT_rich Low_complexity Low_complexity 1 28 0 311 321 176 14 chr12 11199600 11199821 -132586634 + MIR SINE MIR 3 259 -3 1454 64 35 10 chr12 11200558 11200760 -132585695 + AluY SINE Alu 98 304 -7 21 0 0 0 chr12 11201183 11201204 -132585251 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 11201398 11201419 -132585036 + AT_rich Low_complexity Low_complexity 1 21 0 1276 161 13 25 chr12 11201658 11201894 -132584561 + AluJb SINE Alu 4 236 -76 280 138 25 50 chr12 11202220 11202300 -132584155 - MER3 DNA MER1_type -79 130 100 391 294 90 54 chr12 11202601 11202783 -132583672 + L1M4 LINE L1 3389 3563 -2583 2838 43 0 0 chr12 11202783 11203129 -132583326 - L1PA6 LINE L1 -1 6153 5808 391 294 90 54 chr12 11203129 11203389 -132583066 + L1M4 LINE L1 3563 3847 -2299 495 245 143 98 chr12 11203622 11203724 -132582731 + L1M4 LINE L1 4106 4202 -1944 1685 30 0 0 chr12 11203724 11203927 -132582528 + L1PA4 LINE L1 5953 6155 0 495 245 143 98 chr12 11203927 11204305 -132582150 + L1M4 LINE L1 4202 4608 -1538 958 266 14 11 chr12 11204329 11204607 -132581848 - L1MB7 LINE L1 -11 6173 5895 1470 158 46 52 chr12 11205106 11205390 -132581065 - MER44D DNA MER2_type -1882 605 267 1488 96 45 0 chr12 11205390 11205610 -132580845 - MER30 DNA MER1_type 0 230 1 1470 158 46 52 chr12 11205610 11205654 -132580801 - MER44D DNA MER2_type -2220 267 224 1431 257 110 14 chr12 11206395 11206886 -132579569 + L1MDb LINE L1 15 552 -5857 1393 85 66 0 chr12 11207112 11207324 -132579131 - MER30 DNA MER1_type 0 230 5 1725 258 57 28 chr12 11208103 11208631 -132577824 + L1MDb LINE L1 14 556 -5853 607 253 69 42 chr12 11208660 11208949 -132577506 + L1ME3A LINE L1 5799 6095 -75 354 301 41 41 chr12 11209015 11209211 -132577244 + L1ME3A LINE L1 5691 5886 -284 23 54 0 0 chr12 11210096 11210133 -132576322 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 11210602 11210639 -132575816 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr12 11211009 11211045 -132575410 + AT_rich Low_complexity Low_complexity 1 36 0 256 234 0 0 chr12 11211102 11211166 -132575289 + G-rich Low_complexity Low_complexity 1 64 0 7734 23 0 0 chr12 11211266 11213158 -132573297 + L1PA3 LINE L1 4260 6152 -3 324 106 0 0 chr12 11214205 11214252 -132572203 + Alu SINE Alu 1 47 -255 478 290 135 27 chr12 11214340 11214747 -132571708 - L1M4 LINE L1 -2911 4673 4223 242 145 26 66 chr12 11214789 11214865 -132571590 + MER3 DNA MER1_type 102 127 -82 4260 117 7 22 chr12 11215377 11216093 -132570362 - L1MA2 LINE L1 0 6304 5600 24 77 0 0 chr12 11216200 11216252 -132570203 + AT_rich Low_complexity Low_complexity 1 52 0 522 269 0 0 chr12 11216417 11216536 -132569919 + MLT1A1 LTR MaLR 245 363 -2 2108 194 39 73 chr12 11216933 11217496 -132568959 - MLT2B3 LTR ERVL -7 547 4 9038 140 18 23 chr12 11217651 11219112 -132567343 - L1P3 LINE L1 -4979 1482 29 913 213 25 24 chr12 11219134 11219492 -132566963 - L1PA12 LINE L1 -3756 3828 3472 1223 94 0 7 chr12 11219592 11220017 -132566438 + (G)n Simple_repeat Simple_repeat 1 422 0 225 207 0 52 chr12 11220019 11220077 -132566378 + G-rich Low_complexity Low_complexity 5 59 0 1232 209 10 70 chr12 11220084 11220467 -132565988 + L1P3 LINE L1 1087 1446 -5015 5829 226 31 11 chr12 11220471 11221670 -132564785 + L1P3 LINE L1 2783 4019 -2442 1996 110 43 3 chr12 11221670 11221952 -132564503 + AluSc SINE Alu 1 293 -16 5829 226 31 11 chr12 11221952 11222229 -132564226 + L1P3 LINE L1 4019 4289 -2172 743 265 67 36 chr12 11223921 11224144 -132562311 + MIR SINE MIR 18 247 -15 24 32 0 0 chr12 11224424 11224455 -132562000 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 11224800 11224828 -132561627 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 11226614 11226635 -132559820 + AT_rich Low_complexity Low_complexity 1 21 0 245 289 213 25 chr12 11226906 11227103 -132559352 + MIR SINE MIR 26 259 -3 22 0 0 0 chr12 11227382 11227404 -132559051 + AT_rich Low_complexity Low_complexity 1 22 0 5453 124 10 16 chr12 11228692 11229787 -132556668 + L1PA14 LINE L1 5072 6160 -1 1944 243 2 11 chr12 11229792 11230326 -132556129 + L1 LINE L1 4253 4781 -1365 278 353 0 0 chr12 11230499 11230649 -132555806 + C-rich Low_complexity Low_complexity 1 150 0 11057 117 12 13 chr12 11230993 11233541 -132552914 - L1PA7 LINE L1 -3 6151 3614 494 267 46 62 chr12 11233541 11233848 -132552607 + THE1B LTR MaLR 1 302 -62 2488 260 22 18 chr12 11233962 11234816 -132551639 - L1PA12 LINE L1 -4331 3253 2381 655 323 46 87 chr12 11234812 11236023 -132550432 - L1PA12 LINE L1 -5502 2079 182 * 296 257 38 9 chr12 11236030 11236135 -132550320 + L1M4c LINE L1 1459 1566 -4818 2033 117 3 7 chr12 11236549 11236832 -132549623 - AluSg SINE Alu -18 292 11 26 0 0 0 chr12 11237775 11237801 -132548654 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr12 11238731 11238757 -132547698 + AT_rich Low_complexity Low_complexity 1 26 0 3071 245 79 29 chr12 11240543 11240954 -132545501 - L1M4 LINE L1 -1268 4878 4489 2055 126 0 20 chr12 11240954 11241256 -132545199 - AluSx SINE Alu -16 296 1 3071 245 79 29 chr12 11241256 11241965 -132544490 - L1M4 LINE L1 -1657 4489 3701 2428 67 3 7 chr12 11241967 11242267 -132544188 - AluSp SINE Alu -14 299 1 11829 77 5 1 chr12 11242917 11244547 -132541908 - L1P LINE L1 -1691 4455 2819 1085 198 8 60 chr12 11244684 11244936 -132541519 + AluJb SINE Alu 62 300 -12 1998 97 0 11 chr12 11245060 11245328 -132541127 - AluSg SINE Alu -45 265 1 21 71 0 0 chr12 11245445 11245487 -132540968 + AT_rich Low_complexity Low_complexity 1 42 0 2171 189 30 6 chr12 11245748 11246219 -132540236 - Tigger3(Golem) DNA MER2_type -10 3019 2538 192 200 0 0 chr12 11246413 11246458 -132539997 + (TA)n Simple_repeat Simple_repeat 1 45 0 336 324 86 5 chr12 11246593 11246803 -132539652 - MLT1L LTR MaLR -222 393 167 23 0 0 0 chr12 11247045 11247068 -132539387 + AT_rich Low_complexity Low_complexity 1 23 0 844 213 0 0 chr12 11247068 11247223 -132539232 - FRAM SINE Alu -23 153 1 316 340 111 19 chr12 11247378 11247540 -132538915 - MIR3 SINE MIR -12 196 20 205 200 0 0 chr12 11247881 11247921 -132538534 + (TA)n Simple_repeat Simple_repeat 2 41 0 233 177 25 114 chr12 11247936 11248015 -132538440 + MIR SINE MIR 73 144 -64 21 36 0 0 chr12 11248588 11248616 -132537839 + AT_rich Low_complexity Low_complexity 1 28 0 2537 207 6 6 chr12 11249390 11249877 -132536578 + L1PA16 LINE L1 5447 5933 -233 1613 218 25 64 chr12 11250136 11250571 -132535884 - LTR9 LTR ERV1 -194 418 1 3423 188 13 13 chr12 11250578 11251435 -132535020 + L1PA16 LINE L1 4924 5783 -383 2107 139 0 0 chr12 11251435 11251730 -132534725 + AluSx SINE Alu 1 295 -17 3423 188 13 13 chr12 11251730 11251855 -132534600 + L1PA16 LINE L1 5783 5906 -260 240 35 0 0 chr12 11252604 11252633 -132533822 + (T)n Simple_repeat Simple_repeat 1 29 0 1670 126 61 4 chr12 11253271 11253532 -132532923 + AluSx SINE Alu 1 276 -36 191 36 36 0 chr12 11253533 11253561 -132532894 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2974 247 38 16 chr12 11254677 11255754 -132530701 + L1 LINE L1 4019 5119 -1027 4043 164 56 3 chr12 11255757 11256620 -132529835 + L1P4 LINE L1 1 908 -5553 23 0 0 0 chr12 11256667 11256690 -132529765 + GC_rich Low_complexity Low_complexity 1 23 0 752 151 67 17 chr12 11257154 11257333 -132529122 + L1 LINE L1 5062 5249 -897 1707 240 10 31 chr12 11257338 11257946 -132528509 + L1P4 LINE L1 3338 3932 -2529 2202 131 34 20 chr12 11257948 11258306 -132528149 - THE1B LTR MaLR -1 363 1 6357 102 9 2 chr12 11258306 11259227 -132527228 - THE1B-int LTR MaLR 0 1580 654 8643 49 27 5 chr12 11259526 11260471 -132525984 + L1P LINE L1 2132 3054 -3092 2215 105 10 0 chr12 11260471 11260767 -132525688 + AluY SINE Alu 2 300 -11 8643 49 27 5 chr12 11260767 11260964 -132525491 + L1P LINE L1 3054 3307 -2839 222 37 0 0 chr12 11260964 11260991 -132525464 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8643 49 27 5 chr12 11260991 11261092 -132525363 + L1P LINE L1 3307 3404 -2742 2064 126 3 16 chr12 11261597 11261907 -132524548 - AluSx SINE Alu -6 306 1 652 263 190 7 chr12 11261927 11262216 -132524239 - MLT1F1 LTR MaLR -3 564 223 232 191 21 0 chr12 11262249 11262296 -132524159 + GA-rich Low_complexity Low_complexity 1 48 0 840 148 0 16 chr12 11263471 11263599 -132522856 - AluJb SINE Alu -185 127 2 30 83 0 0 chr12 11263691 11263763 -132522692 + AT_rich Low_complexity Low_complexity 1 72 0 3845 202 31 21 chr12 11264294 11265404 -132521051 - L1 LINE L1 -2301 3845 2725 334 262 55 86 chr12 11265447 11265489 -132520966 + L1MEc LINE L1 1020 1062 -5334 2132 108 24 0 chr12 11265489 11265777 -132520678 + AluSp SINE Alu 5 299 -14 334 262 55 86 chr12 11265777 11266024 -132520431 + L1MEc LINE L1 1062 1300 -5096 370 237 50 14 chr12 11266069 11266208 -132520247 + L1MEc LINE L1 1965 2108 -4288 3462 196 25 89 chr12 11266638 11268080 -132518375 + L1P4 LINE L1 4620 5973 -508 447 339 0 0 chr12 11268403 11268583 -132517872 + G-rich Low_complexity Low_complexity 1 180 0 189 175 0 0 chr12 11268813 11268853 -132517602 + (TA)n Simple_repeat Simple_repeat 1 40 0 223 154 0 0 chr12 11269051 11269090 -132517365 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 253 288 56 56 chr12 11269106 11269231 -132517224 - L2 LINE L2 -268 3004 2880 221 395 151 6 chr12 11269281 11269453 -132517002 + MIR3 SINE MIR 8 204 -4 180 111 0 0 chr12 11270457 11270484 -132515971 + (TTG)n Simple_repeat Simple_repeat 2 28 0 453 308 49 62 chr12 11270505 11270879 -132515576 + L2 LINE L2 2129 2499 -815 1876 162 7 0 chr12 11270879 11271176 -132515279 - AluJb SINE Alu -13 299 1 453 308 49 62 chr12 11271176 11271207 -132515248 + L2 LINE L2 2499 2529 -785 1626 221 8 2 chr12 11271580 11271978 -132514477 + L1MA10 LINE L1 5574 5973 -318 * 2601 231 8 6 chr12 11271976 11272683 -132513772 - L1 LINE L1 -1557 4589 3881 318 188 0 0 chr12 11272809 11272873 -132513582 - MER4B LTR ERV1 -546 64 1 393 299 118 33 chr12 11273048 11273259 -132513196 - L3 LINE CR1 -7 1570 1342 1344 42 63 42 chr12 11274091 11274281 -132512174 + AluY SINE Alu 2 195 -116 633 293 48 0 chr12 11274455 11274663 -132511792 + L1MCc LINE L1 974 1191 -5232 347 275 52 40 chr12 11274710 11275168 -132511287 + L1MCc LINE L1 1297 1751 -4887 330 230 62 26 chr12 11275256 11275369 -132511086 + L1MCc LINE L1 3175 3291 -3650 543 132 26 0 chr12 11275374 11275473 -132510982 - MER51A LTR ERV1 0 634 516 1356 177 13 31 chr12 11275690 11276007 -132510448 + L1MA10 LINE L1 6016 6326 -8 1153 28 7 0 chr12 11278945 11279089 -132507366 + L1P LINE L1 4071 4215 -1931 54 0 0 0 chr12 11279589 11279643 -132506812 + AT_rich Low_complexity Low_complexity 1 54 0 352 287 13 20 chr12 11279716 11279866 -132506589 + (TA)n Simple_repeat Simple_repeat 2 150 0 2375 165 78 0 chr12 11280297 11280800 -132505655 - L1 LINE L1 -922 5224 4683 245 258 0 0 chr12 11280813 11280879 -132505576 + L1M3 LINE L1 5370 5435 -748 * 590 213 55 51 chr12 11280876 11280952 -132505503 + L1M2 LINE L1 2719 2793 -4055 990 62 0 42 chr12 11280952 11281096 -132505359 + L1PA10 LINE L1 6022 6159 -9 590 213 55 51 chr12 11281096 11281337 -132505118 + L1M2 LINE L1 2793 3031 -3817 293 226 8 60 chr12 11281447 11281639 -132504816 + C-rich Low_complexity Low_complexity 1 182 0 1732 87 12 4 chr12 11281912 11282166 -132504289 + LTR12 LTR ERV1 459 714 0 1663 214 41 11 chr12 11282211 11282843 -132503612 + L1M2 LINE L1 3149 3843 -3005 1276 131 100 3 chr12 11282836 11283187 -132503268 + L1PA8 LINE L1 5766 6150 -22 * 263 308 17 41 chr12 11283452 11283624 -132502831 + GA-rich Low_complexity Low_complexity 2 169 0 * 366 369 0 0 chr12 11283594 11283770 -132502685 + G-rich Low_complexity Low_complexity 1 176 0 269 232 0 0 chr12 11283971 11284040 -132502415 - LTR30 LTR ERV1 -98 624 556 1798 190 124 70 chr12 11284045 11284691 -132501764 - pTR5 LTR ERV1 -406 2032 1352 1222 190 77 0 chr12 11284707 11284981 -132501474 + MER2 DNA MER2_type 51 345 0 296 164 0 0 chr12 11284991 11285046 -132501409 - L1 LINE L1 -3705 2441 2387 1199 257 97 9 chr12 11285162 11285711 -132500744 + L1M2 LINE L1 3875 4471 -2377 430 291 103 22 chr12 11286750 11286973 -132499482 - L1M4 LINE L1 -2517 3629 3389 236 150 38 62 chr12 11287274 11287354 -132499101 + MER3 DNA MER1_type 100 130 -79 259 310 10 10 chr12 11287509 11287609 -132498846 + CT-rich Low_complexity Low_complexity 4 103 0 22 70 0 0 chr12 11288510 11288553 -132497902 + AT_rich Low_complexity Low_complexity 1 43 0 557 287 99 14 chr12 11289291 11289514 -132496941 - L1ME LINE L1 -405 5765 5524 2109 118 0 0 chr12 11289521 11289801 -132496654 + AluSx SINE Alu 1 280 -32 2743 51 0 0 chr12 11290617 11290951 -132495504 - L1PA7 LINE L1 -13 6141 5808 388 304 101 57 chr12 11290959 11291344 -132495111 + L1M4 LINE L1 3580 3981 -2165 3875 125 15 11 chr12 11292206 11292821 -132493634 + LTR5 LTR ERVK 1 617 -352 910 180 40 35 chr12 11292941 11293169 -132493286 + THE1C LTR MaLR 147 375 0 2047 228 116 15 chr12 11293179 11294057 -132492398 + L1M2 LINE L1 2724 3692 -3156 772 271 71 12 chr12 11294272 11294681 -132491774 - L1M4 LINE L1 -3169 2977 2545 * 1740 170 42 0 chr12 11294655 11295008 -132491447 + L1MA4A LINE L1 5914 6281 -22 314 329 65 29 chr12 11295030 11295200 -132491255 - L1M4 LINE L1 -3586 2560 2385 7009 30 22 1 chr12 11295312 11296160 -132490295 + L1PA4 LINE L1 5286 6151 -4 400 299 73 17 chr12 11296390 11296567 -132489888 - MER110 LTR ERV1 -93 398 212 1611 144 3 87 chr12 11296595 11296907 -132489548 - AluJo SINE Alu -26 286 1 180 0 0 0 chr12 11298260 11298280 -132488175 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 3940 72 18 23 chr12 11298596 11298967 -132487488 - L1PA6 LINE L1 -4 6150 5782 2686 23 0 0 chr12 11298967 11299275 -132487180 - AluYa5 SINE Alu -3 308 1 3940 72 18 23 chr12 11299275 11299472 -132486983 - L1PA6 LINE L1 -372 5782 5585 24 32 0 0 chr12 11299598 11299629 -132486826 + AT_rich Low_complexity Low_complexity 1 31 0 548 191 64 127 chr12 11299794 11300014 -132486441 + MER96B DNA MER1_type? 211 416 -1 4944 156 48 12 chr12 11300135 11300610 -132485845 - L1MA9 LINE L1 0 6312 5855 384 22 0 0 chr12 11300610 11300655 -132485800 + (TG)n Simple_repeat Simple_repeat 2 46 0 4944 156 48 12 chr12 11300655 11301387 -132485068 - L1MA9 LINE L1 -457 5855 5036 2292 125 0 0 chr12 11301387 11301692 -132484763 - AluSg SINE Alu -5 305 1 4944 156 48 12 chr12 11301692 11301999 -132484456 - L1MA9 LINE L1 -1276 5036 4741 321 244 44 59 chr12 11302012 11302147 -132484308 + MIR SINE MIR 112 244 -18 237 123 386 0 chr12 11302708 11302765 -132483690 - MADE1 DNA Mariner 0 80 2 676 311 55 26 chr12 11302921 11303301 -132483154 - L1MC4a LINE L1 -1928 5880 5490 1284 273 80 42 chr12 11303364 11303962 -132482493 - L1ME3A LINE L1 -11 6159 5539 2056 129 10 3 chr12 11304236 11304531 -132481924 + AluSq SINE Alu 1 297 -16 230 278 22 78 chr12 11305215 11305305 -132481150 - MIR3 SINE MIR -39 169 85 29 0 0 0 chr12 11306868 11306897 -132479558 + AT_rich Low_complexity Low_complexity 1 29 0 265 337 54 0 chr12 11307360 11307452 -132479003 + L2 LINE L2 3212 3308 -5 296 132 0 20 chr12 11308685 11308745 -132477710 + L1MC2 LINE L1 5180 5237 -909 4877 165 43 8 chr12 11308852 11309787 -132476668 + L1MC2 LINE L1 5364 6331 -13 2545 188 118 37 chr12 11309804 11310457 -132475998 + L1MD1 LINE L1 5441 6146 -96 659 240 228 4 chr12 11310457 11310639 -132475816 + MSTD LTR MaLR 1 141 -255 321 47 0 0 chr12 11310639 11310682 -132475773 + (TC)n Simple_repeat Simple_repeat 1 43 0 659 240 228 4 chr12 11310682 11310745 -132475710 + MSTD LTR MaLR 141 301 -95 * 668 204 39 97 chr12 11310735 11311014 -132475441 - MLT1C LTR MaLR -196 271 9 311 177 161 0 chr12 11311022 11311084 -132475371 + MER5A DNA MER1_type 93 164 -25 939 43 0 51 chr12 11311092 11311230 -132475225 + L1MA6 LINE L1 6170 6300 0 289 172 172 0 chr12 11311391 11311449 -132475006 + MER5A DNA MER1_type 99 166 -23 979 63 0 42 chr12 11311451 11311594 -132474861 + L1PA10 LINE L1 6023 6159 -9 1131 189 32 73 chr12 11311594 11311946 -132474509 + L1M1 LINE L1 3523 3860 -3705 1328 193 73 0 chr12 11311956 11312231 -132474224 - MER2 DNA MER2_type 0 345 51 229 250 0 0 chr12 11312239 11312291 -132474164 + LTR30 LTR ERV1 1 52 -670 3400 103 138 107 chr12 11312291 11313373 -132473082 + LTR12 LTR ERV1 57 714 0 2367 211 106 11 chr12 11313418 11314049 -132472406 + L1M1 LINE L1 3866 4556 -3009 * 2992 70 3 0 chr12 11314046 11314431 -132472024 + L1PA8 LINE L1 5766 6151 -21 514 209 99 0 chr12 11314441 11314623 -132471832 + L1M1 LINE L1 4536 4735 -2830 2196 170 3 0 chr12 11314797 11315161 -132471294 + MLT1A1 LTR MaLR 1 365 0 334 323 15 8 chr12 11315214 11315347 -132471108 - L2 LINE L2 0 3313 3180 1206 251 28 8 chr12 11315348 11315747 -132470708 + L1ME1 LINE L1 2464 2870 -3276 244 50 0 0 chr12 11315748 11315788 -132470667 - Alu SINE Alu 0 302 263 948 112 7 7 chr12 11315789 11315932 -132470523 - AluSq/x SINE Alu -169 143 1 316 235 12 0 chr12 11315970 11316051 -132470404 + L1ME1 LINE L1 2956 3037 -3109 5531 238 66 40 chr12 11316102 11316240 -132470215 + L1ME1 LINE L1 3211 3344 -2830 1792 196 48 24 chr12 11316240 11316694 -132469761 + MLT1C LTR MaLR 1 465 -2 5531 238 66 40 chr12 11316694 11317046 -132469409 + L1ME1 LINE L1 3344 3685 -2489 2393 67 3 7 chr12 11317046 11317346 -132469109 + AluSp SINE Alu 1 299 -14 5531 238 66 40 chr12 11317346 11318058 -132468397 + L1ME1 LINE L1 3685 4377 -1797 2096 120 0 17 chr12 11318058 11318359 -132468096 + AluSx SINE Alu 1 296 -16 5531 238 66 40 chr12 11318359 11319054 -132467401 + L1ME1 LINE L1 4377 5174 -1000 635 95 0 0 chr12 11319054 11319149 -132467306 - L1PB1 LINE L1 -8 6143 6049 5531 238 66 40 chr12 11319149 11319575 -132466880 + L1ME1 LINE L1 5174 5588 -586 662 191 0 0 chr12 11319597 11319712 -132466743 + FLAM_C SINE Alu 1 115 -28 189 0 0 0 chr12 11319712 11319733 -132466722 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1861 206 83 46 chr12 11319735 11320280 -132466175 + L1ME1 LINE L1 5597 6161 -5 1431 216 137 12 chr12 11320290 11320707 -132465748 + L1MC4 LINE L1 7561 8029 -13 1761 146 7 34 chr12 11321634 11321929 -132464526 + AluJb SINE Alu 1 287 -25 285 29 0 0 chr12 11323558 11323592 -132462863 + (TG)n Simple_repeat Simple_repeat 2 35 0 270 292 10 0 chr12 11324465 11324561 -132461894 + L1ME4a LINE L1 5802 5898 -223 22 80 0 0 chr12 11324974 11325024 -132461431 + AT_rich Low_complexity Low_complexity 1 50 0 233 219 172 0 chr12 11325249 11325313 -132461142 - MIR SINE MIR -109 153 79 3377 131 73 13 chr12 11325910 11326530 -132459925 + L1MA10 LINE L1 5676 6332 -2 279 297 70 16 chr12 11330523 11330651 -132455804 + MER5A DNA MER1_type 49 183 -6 27 29 0 0 chr12 11331970 11332004 -132454451 + AT_rich Low_complexity Low_complexity 1 34 0 335 317 28 14 chr12 11332159 11332304 -132454151 - L1ME LINE L1 -462 5659 5513 303 234 31 0 chr12 11333045 11333109 -132453346 - MIR SINE MIR -108 154 89 534 298 57 40 chr12 11333220 11333448 -132453007 + MIR SINE MIR 21 252 -10 202 306 181 0 chr12 11333935 11334007 -132452448 + L2 LINE L2 3171 3255 -58 1978 62 19 11 chr12 11334834 11335094 -132451361 + AluY SINE Alu 43 304 -7 22 0 0 0 chr12 11335541 11335563 -132450892 + AT_rich Low_complexity Low_complexity 1 22 0 200 245 41 0 chr12 11335833 11335882 -132450573 - L2 LINE L2 -8 3264 3214 238 163 61 0 chr12 11336634 11336645 -132449810 + MER3 DNA MER1_type 37 50 -159 314 129 129 0 chr12 11336645 11336707 -132449748 - MER3 DNA MER1_type 0 209 140 472 214 45 9 chr12 11336919 11337031 -132449424 - MER3 DNA MER1_type -89 120 5 745 250 91 19 chr12 11338553 11338817 -132447638 - L1ME LINE L1 -343 5778 5496 376 160 217 57 chr12 11338923 11339029 -132447426 - L2 LINE L2 -12 3301 3179 263 347 119 27 chr12 11340110 11340329 -132446126 - MIR SINE MIR -2 260 22 739 114 0 0 chr12 11342035 11342140 -132444315 + AluSg/x SINE Alu 182 286 -26 216 0 0 0 chr12 11342335 11342359 -132444096 + (A)n Simple_repeat Simple_repeat 1 24 0 309 370 74 0 chr12 11342734 11342896 -132443559 - MIR SINE MIR -7 255 82 2283 94 0 3 chr12 11343224 11343533 -132442922 + AluSx SINE Alu 3 310 -2 1246 193 36 0 chr12 11343825 11343948 -132442507 + AluJb SINE Alu 1 118 -187 531 0 0 0 chr12 11343948 11344007 -132442448 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1246 193 36 0 chr12 11344007 11344178 -132442277 + AluJb SINE Alu 118 305 0 199 322 149 0 chr12 11344566 11344687 -132441768 + L2 LINE L2 2920 3058 -214 324 259 105 37 chr12 11346206 11346368 -132440087 + MIR SINE MIR 34 206 -56 1737 79 0 9 chr12 11346531 11346760 -132439695 + AluSq SINE Alu 85 311 -2 1984 108 58 0 chr12 11346779 11347057 -132439398 + AluSq SINE Alu 1 294 -19 305 358 103 0 chr12 11347139 11347304 -132439151 - L2 LINE L2 -222 3050 2869 490 219 57 0 chr12 11347465 11347570 -132438885 + MER81 DNA DNA 1 111 -3 585 202 40 0 chr12 11348056 11348180 -132438275 + MER3 DNA MER1_type 81 209 0 281 207 35 0 chr12 11348137 11348195 -132438260 - MER3 DNA MER1_type -119 90 31 * 256 307 171 11 chr12 11349755 11349931 -132436524 + L2 LINE L2 2848 3051 -221 376 198 153 9 chr12 11350708 11350819 -132435636 - MIR SINE MIR -11 251 125 29 0 0 0 chr12 11350939 11350968 -132435487 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 11351106 11351128 -132435327 + (CA)n Simple_repeat Simple_repeat 1 22 0 258 160 0 0 chr12 11353395 11353445 -132433010 + (TG)n Simple_repeat Simple_repeat 2 51 0 1926 159 3 13 chr12 11355896 11356211 -132430244 + AluJb SINE Alu 1 312 0 306 67 0 0 chr12 11356951 11356996 -132429459 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2322 62 0 0 chr12 11357000 11357274 -132429181 - AluY SINE Alu -37 274 1 255 352 106 0 chr12 11357516 11357658 -132428797 + MER5B DNA MER1_type 7 163 -15 2361 53 0 3 chr12 11358482 11358792 -132427663 + AluY SINE Alu 1 309 0 299 308 131 58 chr12 11359836 11360232 -132426223 - L2 LINE L2 -17 3296 2872 444 278 138 8 chr12 11360725 11360916 -132425539 - MIR SINE MIR -1 261 38 877 223 5 5 chr12 11360916 11361113 -132425342 - MER3 DNA MER1_type -1 208 12 540 0 0 0 chr12 11361790 11361850 -132424605 + (GA)n Simple_repeat Simple_repeat 1 60 0 2203 123 3 3 chr12 11361861 11362169 -132424286 + AluSx SINE Alu 1 308 -4 1098 173 36 0 chr12 11362327 11362547 -132423908 + L1 LINE L1 3812 4039 -2107 1505 260 240 66 chr12 11363655 11363828 -132422627 - L2 LINE L2 0 3313 3171 583 176 0 101 chr12 11363828 11363976 -132422479 + FLAM_A SINE Alu 1 133 0 1505 260 240 66 chr12 11363976 11365123 -132421332 - L2 LINE L2 -142 3171 1759 233 270 191 0 chr12 11365204 11365319 -132421136 - L3b LINE CR1 -205 1378 1242 675 236 6 32 chr12 11366886 11367043 -132419412 - FRAM SINE Alu -24 152 1 2481 62 0 13 chr12 11369094 11369398 -132417057 - AluY SINE Alu -11 300 1 206 95 24 0 chr12 11370889 11370931 -132415524 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 247 317 24 0 chr12 11371047 11371129 -132415326 - L2 LINE L2 -8 3264 3181 2154 106 3 7 chr12 11371175 11371467 -132414988 - AluSx SINE Alu -17 295 5 388 314 95 14 chr12 11374038 11374248 -132412207 + MIR SINE MIR 29 255 -7 25 31 0 0 chr12 11375317 11375349 -132411106 + AT_rich Low_complexity Low_complexity 1 32 0 390 351 96 16 chr12 11375401 11375734 -132410721 - L2 LINE L2 -214 3058 2695 1633 225 67 43 chr12 11375744 11376282 -132410173 + L1MD2 LINE L1 5795 6345 -14 663 277 100 73 chr12 11376501 11377132 -132409323 - L2 LINE L2 -939 2375 1728 371 248 5 151 chr12 11377417 11377500 -132408955 - MER5B DNA MER1_type -1 177 84 2249 118 48 25 chr12 11377500 11377856 -132408599 + THE1B LTR MaLR 1 364 0 11581 102 6 0 chr12 11377856 11379426 -132407029 + THE1B-int LTR MaLR 1 1580 0 2190 107 62 37 chr12 11379426 11379781 -132406674 + THE1B LTR MaLR 1 364 0 371 248 5 151 chr12 11379781 11379901 -132406554 - MER5B DNA MER1_type -91 87 2 234 0 0 0 chr12 11380368 11380394 -132406061 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 513 179 0 0 chr12 11380399 11380483 -132405972 - AluJ SINE Alu -24 288 205 804 201 0 7 chr12 11380484 11380623 -132405832 - AluJ SINE Alu -173 139 2 21 36 0 0 chr12 11380865 11380893 -132405562 + AT_rich Low_complexity Low_complexity 1 28 0 449 194 16 91 chr12 11380893 11381079 -132405376 + L1MC5 LINE L1 7760 7931 -30 2367 57 6 31 chr12 11381588 11381906 -132404549 + AluY SINE Alu 1 310 -1 220 337 0 12 chr12 11382074 11382160 -132404295 + MIR SINE MIR 103 187 -75 2388 76 0 13 chr12 11382476 11382780 -132403675 + AluSx SINE Alu 1 300 -12 629 247 37 43 chr12 11383111 11383329 -132403126 + MIR SINE MIR 49 262 0 690 226 0 41 chr12 11383754 11383900 -132402555 + MER5B DNA MER1_type 35 174 -4 200 279 0 16 chr12 11384004 11384065 -132402390 + CT-rich Low_complexity Low_complexity 1 60 0 301 280 11 19 chr12 11384070 11384205 -132402250 + MIR SINE MIR 82 212 -50 275 280 53 0 chr12 11384751 11384826 -132401629 + MIR SINE MIR 36 114 -94 2044 78 85 14 chr12 11384826 11385109 -132401346 - AluY SINE Alu -8 303 1 3888 136 21 2 chr12 11385594 11386217 -132400238 + MER41B LTR ERV1 1 635 0 3147 124 18 12 chr12 11386217 11386788 -132399667 + MER41B-int LTR ERV1 1 633 -5313 * 29469 102 38 19 chr12 11386780 11387732 -132398723 + MER41B-int LTR ERV1 1083 2016 -3930 2141 133 22 35 chr12 11387732 11388101 -132398354 + THE1B LTR MaLR 1 364 0 2474 87 3 0 chr12 11388102 11388412 -132398043 + AluY SINE Alu 1 311 0 29469 102 38 19 chr12 11388412 11392232 -132394223 + MER41B-int LTR ERV1 2015 5946 0 3718 141 41 3 chr12 11392232 11392844 -132393611 + MER41B LTR ERV1 1 635 0 678 237 217 10 chr12 11393333 11393531 -132392924 - MIR SINE MIR -1 261 23 4298 183 40 9 chr12 11393614 11394842 -132391613 - L1MB7 LINE L1 -19 6165 4888 880 186 7 0 chr12 11394890 11395035 -132391420 - FRAM SINE Alu -30 146 1 1221 176 14 92 chr12 11395035 11395091 -132391364 - L1MB7 LINE L1 -1373 4773 4714 2349 54 44 0 chr12 11395091 11395386 -132391069 + AluY SINE Alu 4 311 0 1221 176 14 92 chr12 11395386 11395686 -132390769 - L1MB7 LINE L1 -1432 4714 4445 2066 141 24 29 chr12 11398314 11398691 -132387764 + THE1C LTR MaLR 1 375 0 1628 173 0 49 chr12 11399101 11399407 -132387048 + AluJb SINE Alu 12 302 -10 180 0 0 0 chr12 11400098 11400118 -132386337 + (CTG)n Simple_repeat Simple_repeat 1 20 0 2139 105 0 63 chr12 11400118 11400452 -132386003 - AluSq SINE Alu 0 313 1 405 237 149 18 chr12 11400789 11400903 -132385552 + L2 LINE L2 3185 3313 0 3796 152 39 95 chr12 11401217 11402631 -132383824 + L1MA9 LINE L1 4969 6299 -13 1590 204 72 58 chr12 11402687 11402753 -132383702 + MLT1D LTR MaLR 5 69 -436 2410 53 17 3 chr12 11402753 11403052 -132383403 - AluY SINE Alu -8 303 1 1590 204 72 58 chr12 11403052 11403471 -132382984 + MLT1D LTR MaLR 69 497 -8 1229 215 52 12 chr12 11403661 11403984 -132382471 + MLT1B LTR MaLR 7 342 -48 753 170 29 0 chr12 11403984 11404149 -132382306 + MER1B DNA MER1_type 1 148 -149 724 151 8 8 chr12 11404165 11404291 -132382164 - AluSq/x SINE Alu -183 130 5 1154 110 0 37 chr12 11404295 11404486 -132381969 + MER1B DNA MER1_type 136 319 -20 335 135 0 0 chr12 11404495 11404547 -132381908 + MLT1B LTR MaLR 416 467 0 1452 77 0 25 chr12 11404938 11405134 -132381321 + AluSg/x SINE Alu 92 282 -30 276 267 53 0 chr12 11405232 11405307 -132381148 - MIR SINE MIR -67 195 117 2282 101 13 0 chr12 11406230 11406538 -132379917 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 11406628 11406649 -132379806 + GC_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr12 11406649 11406679 -132379776 + (CA)n Simple_repeat Simple_repeat 1 30 0 395 149 23 11 chr12 11407031 11407118 -132379337 + L1MB3 LINE L1 6087 6174 -9 1127 206 56 103 chr12 11408848 11409313 -132377142 - MLT1D LTR MaLR 0 505 63 1970 120 39 34 chr12 11409315 11409863 -132376592 - MER51A LTR ERV1 0 634 1 429 108 15 0 chr12 11409863 11409926 -132376529 - MLT1D LTR MaLR -441 64 1 297 0 0 0 chr12 11410015 11410048 -132376407 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 464 263 44 0 chr12 11410294 11410408 -132376047 + MIR3 SINE MIR 83 201 -7 285 311 98 16 chr12 11410475 11410597 -132375858 - L3 LINE CR1 -85 1492 1361 229 308 98 14 chr12 11410590 11410733 -132375722 + MIR SINE MIR 102 256 -6 * 273 327 75 69 chr12 11410804 11411122 -132375333 - L3 LINE CR1 -749 828 509 307 329 121 54 chr12 11411632 11411912 -132374543 + L2 LINE L2 2932 3230 -42 917 288 113 39 chr12 11412450 11412884 -132373571 + L2 LINE L2 2848 3313 0 191 36 36 0 chr12 11413175 11413203 -132373252 + (TA)n Simple_repeat Simple_repeat 1 29 0 343 118 16 91 chr12 11413225 11413411 -132373044 + (TA)n Simple_repeat Simple_repeat 1 172 0 * 347 159 62 45 chr12 11413292 11413468 -132372987 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 412 278 208 32 chr12 11413831 11414202 -132372253 + MLT1J2 LTR MaLR 1 436 -14 390 253 0 10 chr12 11414415 11414514 -132371941 + Charlie7 DNA MER1_type 124 221 -2391 486 264 179 8 chr12 11414613 11414966 -132371489 + Charlie7 DNA MER1_type 1436 1848 -764 1275 72 0 0 chr12 11414966 11415175 -132371280 - AluSc SINE Alu 0 336 128 434 232 118 16 chr12 11415236 11415482 -132370973 + Charlie7 DNA MER1_type 1853 2123 -489 201 175 0 0 chr12 11415487 11415527 -132370928 + (TA)n Simple_repeat Simple_repeat 1 40 0 225 224 0 0 chr12 11415584 11415642 -132370813 - L1MC4 LINE L1 -1345 6697 6640 317 297 11 0 chr12 11415701 11415792 -132370663 - L1MC4 LINE L1 -1339 6703 6612 428 229 28 14 chr12 11415832 11415976 -132370479 + Charlie7 DNA MER1_type 2204 2349 -263 23 0 0 0 chr12 11416125 11416148 -132370307 + AT_rich Low_complexity Low_complexity 1 23 0 1753 173 104 33 chr12 11416213 11416636 -132369819 - MLT2B1 LTR ERVL -67 453 1 3601 153 36 12 chr12 11416636 11416865 -132369590 - ERVL-B1 LTR ERVL -7 5757 5535 2009 171 6 0 chr12 11416865 11417204 -132369251 - MER2 DNA MER2_type -3 341 1 3601 153 36 12 chr12 11417204 11417665 -132368790 - ERVL-B1 LTR ERVL -229 5535 5050 * 7344 149 66 2 chr12 11417663 11418966 -132367489 - ERVL-B1 LTR ERVL -1699 4065 2680 1245 150 98 33 chr12 11418971 11419244 -132367211 + THE1C LTR MaLR 1 291 -84 2474 106 45 46 chr12 11419244 11419699 -132366756 + THE1C LTR MaLR 1 428 0 966 163 17 6 chr12 11419701 11419879 -132366576 + THE1C-int LTR MaLR 3 182 -1398 413 135 40 0 chr12 11419879 11419953 -132366502 + THE1C LTR MaLR 352 428 0 13345 191 31 7 chr12 11419955 11422568 -132363887 - ERVL-B1 LTR ERVL -3087 2677 2 364 91 0 0 chr12 11422571 11422626 -132363829 - ERVL-B1 LTR ERVL -2 518 464 283 149 0 53 chr12 11422626 11422720 -132363735 + (TA)n Simple_repeat Simple_repeat 1 89 0 1711 168 129 30 chr12 11422725 11423160 -132363295 - MLT2B1 LTR ERVL -40 480 3 184 301 58 39 chr12 11423877 11423980 -132362475 + L2 LINE L2 2202 2306 -1008 6825 217 93 33 chr12 11424424 11425858 -132360597 + L1ME LINE L1 2661 4009 -2233 2428 71 0 3 chr12 11425858 11426169 -132360286 + AluY SINE Alu 1 310 -1 6825 217 93 33 chr12 11426169 11427109 -132359346 + L1ME LINE L1 4009 4892 -1350 2017 136 10 3 chr12 11427109 11427411 -132359044 + AluSc SINE Alu 1 304 -5 6825 217 93 33 chr12 11427411 11427763 -132358692 + L1ME LINE L1 4892 5222 -1020 1794 156 38 41 chr12 11427763 11428154 -132358301 - MLT1B LTR MaLR 0 390 1 6825 217 93 33 chr12 11428154 11428189 -132358266 + L1ME LINE L1 5222 5596 -646 360 0 0 0 chr12 11428194 11428234 -132358221 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 275 62 0 chr12 11429407 11429487 -132356968 + L1ME LINE L1 5740 5824 -297 348 77 0 0 chr12 11429779 11429831 -132356624 + (CA)n Simple_repeat Simple_repeat 1 52 0 464 250 194 52 chr12 11430047 11430335 -132356120 + L2 LINE L2 2947 3275 -38 23 0 0 0 chr12 11430965 11430988 -132355467 + AT_rich Low_complexity Low_complexity 1 23 0 381 279 111 41 chr12 11432333 11432577 -132353878 - MIR SINE MIR 0 262 2 204 93 37 19 chr12 11433287 11433341 -132353114 + A-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr12 11433957 11433983 -132352472 + AT_rich Low_complexity Low_complexity 1 26 0 2142 111 17 7 chr12 11433996 11434293 -132352162 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr12 11434608 11434631 -132351824 + AT_rich Low_complexity Low_complexity 1 23 0 232 235 0 0 chr12 11434696 11434747 -132351708 - MER116 DNA Mariner -3 77 27 302 125 0 0 chr12 11435307 11435355 -132351100 - Alu SINE Alu -12 290 243 195 364 57 0 chr12 11435355 11435443 -132351012 - MIR SINE MIR -168 94 2 470 278 100 48 chr12 11436361 11436591 -132349864 + L2 LINE L2 1323 1564 -1750 1380 254 106 11 chr12 11436733 11436849 -132349606 - L1MC4 LINE L1 -295 7747 7643 2277 85 0 10 chr12 11436849 11437143 -132349312 - AluSc SINE Alu -11 298 8 1380 254 106 11 chr12 11437143 11437490 -132348965 - L1MC4 LINE L1 -399 7643 7240 1653 201 98 8 chr12 11437496 11437874 -132348581 - L1MC4 LINE L1 -956 7086 6675 871 253 125 142 chr12 11438032 11438493 -132347962 + L2 LINE L2 1701 2169 -1145 2366 81 0 0 chr12 11438493 11438807 -132347648 + AluY SINE Alu 1 314 0 871 253 125 142 chr12 11438807 11439603 -132346852 + L2 LINE L2 2169 2937 -377 381 261 193 43 chr12 11441168 11441375 -132345080 - MIR SINE MIR -6 256 19 201 121 0 0 chr12 11441586 11441619 -132344836 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1307 187 53 28 chr12 11442339 11442773 -132343682 + Charlie1b DNA MER1_type 35 523 0 819 89 0 0 chr12 11444681 11444793 -132341662 + L1PB1 LINE L1 6033 6144 -7 2058 111 34 7 chr12 11446509 11446807 -132339648 - AluSx SINE Alu -6 306 1 27 0 0 0 chr12 11446883 11446910 -132339545 + AT_rich Low_complexity Low_complexity 1 27 0 2190 112 10 3 chr12 11447020 11447315 -132339140 + AluSq SINE Alu 1 297 -16 246 289 39 67 chr12 11447987 11448091 -132338364 - MIR3 SINE MIR -23 185 85 474 304 51 0 chr12 11450442 11450600 -132335855 + MIR3 SINE MIR 30 195 -13 302 256 109 119 chr12 11454633 11454827 -132331628 - L1M2 LINE L1 -5774 1075 881 207 0 0 0 chr12 11454827 11454850 -132331605 + (TGG)n Simple_repeat Simple_repeat 2 24 0 302 256 109 119 chr12 11454850 11455050 -132331405 - L1M2 LINE L1 -5968 881 685 227 366 20 10 chr12 11455979 11456080 -132330375 + MIR SINE MIR 28 129 -133 268 333 0 0 chr12 11456289 11456364 -132330091 + L2 LINE L2 3193 3267 -5 194 304 22 54 chr12 11457150 11457242 -132329213 - L2 LINE L2 0 3272 3184 731 193 24 54 chr12 11457595 11457761 -132328694 - MER69A DNA AcHobo 0 177 17 292 286 0 61 chr12 11457877 11457975 -132328480 - MLT2E LTR ERVL -496 132 41 966 188 87 42 chr12 11458462 11458750 -132327705 - MER33 DNA MER1_type -22 302 2 442 304 70 19 chr12 11459447 11459605 -132326850 - MIR3 SINE MIR -20 188 23 1645 117 0 107 chr12 11459676 11459974 -132326481 + AluJb SINE Alu 32 297 -15 351 0 0 0 chr12 11460722 11460761 -132325694 + (TA)n Simple_repeat Simple_repeat 1 39 0 1730 189 34 20 chr12 11461082 11461432 -132325023 - MLT1A1 LTR MaLR -8 357 3 26 82 0 0 chr12 11461521 11461582 -132324873 + AT_rich Low_complexity Low_complexity 1 61 0 32 0 0 0 chr12 11461965 11461997 -132324458 + AT_rich Low_complexity Low_complexity 1 32 0 933 147 223 83 chr12 11463015 11463280 -132323175 - AluJb SINE Alu 0 302 1 538 294 52 26 chr12 11463427 11463621 -132322834 - MIR SINE MIR -62 200 2 596 258 134 28 chr12 11464696 11465144 -132321311 + LTR33 LTR ERVL 12 521 0 450 155 14 0 chr12 11465317 11465388 -132321067 - MER81 DNA DNA -42 72 1 381 175 16 0 chr12 11466577 11466640 -132319815 - MER81 DNA DNA -42 72 9 649 285 79 19 chr12 11466650 11466767 -132319688 + MIR SINE MIR 32 140 -122 1550 184 7 31 chr12 11466767 11467061 -132319394 + AluJo SINE Alu 2 288 -24 649 285 79 19 chr12 11467061 11467157 -132319298 + MIR SINE MIR 140 258 -4 21 0 0 0 chr12 11468132 11468153 -132318302 + AT_rich Low_complexity Low_complexity 1 21 0 2423 74 3 0 chr12 11468661 11468958 -132317497 + AluSg SINE Alu 1 298 -12 2454 253 51 45 chr12 11469046 11470086 -132316369 + L1MC4 LINE L1 6997 8042 0 21 57 0 0 chr12 11470200 11470235 -132316220 + AT_rich Low_complexity Low_complexity 1 35 0 1717 201 0 0 chr12 11470762 11471050 -132315405 - AluJb SINE Alu -24 288 1 1132 183 24 56 chr12 11471187 11471438 -132315017 + MLT1A2 LTR MaLR 1 243 -131 758 230 24 12 chr12 11471535 11471700 -132314755 + MLT1A2 LTR MaLR 208 374 0 1479 186 15 22 chr12 11472105 11472379 -132314076 - AluJo SINE Alu -12 300 29 435 333 0 0 chr12 11472639 11472783 -132313672 + MER117 DNA MER1_type 9 152 -45 212 353 86 11 chr12 11474084 11474271 -132312184 - MIR SINE MIR -31 231 31 718 244 10 70 chr12 11474621 11474822 -132311633 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 11475012 11475033 -132311422 + AT_rich Low_complexity Low_complexity 1 21 0 26050 78 211 5 chr12 11475050 11480120 -132306335 - L1PA6 LINE L1 -5 6149 15 835 209 7 0 chr12 11480120 11480268 -132306187 - AluJb SINE Alu -27 285 137 1358 194 0 27 chr12 11480348 11480611 -132305844 - AluJo SINE Alu -36 276 21 21 36 0 0 chr12 11480628 11480656 -132305799 + AT_rich Low_complexity Low_complexity 1 28 0 424 308 50 18 chr12 11481647 11481828 -132304627 + MIR SINE MIR 1 185 -59 256 305 143 9 chr12 11482259 11482364 -132304091 - MIR SINE MIR -59 149 31 322 320 45 34 chr12 11483575 11483753 -132302702 - L1MEd LINE L1 -5899 220 41 313 275 62 28 chr12 11483793 11483971 -132302484 - L1M4 LINE L1 -1497 4649 4466 239 362 64 0 chr12 11484602 11484696 -132301759 - L2 LINE L2 -39 3233 3134 204 167 0 0 chr12 11485017 11485065 -132301390 + (TG)n Simple_repeat Simple_repeat 1 48 0 439 319 133 19 chr12 11485788 11485998 -132300457 + MIR SINE MIR 2 235 -27 1021 141 7 0 chr12 11486002 11486151 -132300304 + AluSx SINE Alu 1 150 -163 465 143 36 0 chr12 11486152 11486236 -132300219 - AluJ/FLAM SINE Alu -225 87 1 1764 155 82 18 chr12 11486251 11486593 -132299862 - THE1B LTR MaLR 0 364 1 11289 103 6 6 chr12 11486597 11488173 -132298282 - THE1B-int LTR MaLR -4 1576 1 2059 130 67 14 chr12 11488173 11488519 -132297936 - THE1B LTR MaLR 0 364 1 298 277 123 8 chr12 11488527 11488657 -132297798 - MIR SINE MIR -42 220 76 865 131 31 0 chr12 11488979 11489109 -132297346 + AluSx SINE Alu 158 291 -19 263 299 69 11 chr12 11489401 11489488 -132296967 - L2 LINE L2 -64 3208 3117 278 303 0 64 chr12 11490064 11490173 -132296282 - L2 LINE L2 -16 3297 3196 2472 172 88 24 chr12 11492549 11493096 -132293359 - L1 LINE L1 -1139 5243 4662 2828 252 15 21 chr12 11493117 11494217 -132292238 - L1M4c LINE L1 -3248 3858 2764 21 0 0 0 chr12 11494456 11494477 -132291978 + AT_rich Low_complexity Low_complexity 1 21 0 1150 187 41 4 chr12 11494479 11494725 -132291730 - L1MC2 LINE L1 -11 6333 6079 22 0 0 0 chr12 11494855 11494877 -132291578 + AT_rich Low_complexity Low_complexity 1 22 0 1986 251 130 17 chr12 11494926 11495800 -132290655 - L1M4c LINE L1 -4519 2518 1761 1621 162 49 35 chr12 11495800 11496084 -132290371 - AluJo SINE Alu -24 288 1 1986 251 130 17 chr12 11496084 11496757 -132289698 - L1M4c LINE L1 -5276 1761 1165 352 284 17 0 chr12 11496844 11496960 -132289495 - L1ME3 LINE L1 -2 6160 6043 536 197 44 9 chr12 11497242 11497459 -132288996 - L1ME3 LINE L1 -718 5444 5219 190 333 27 54 chr12 11498934 11499045 -132287410 + MIR3 SINE MIR 91 198 -10 545 275 90 34 chr12 11499664 11499897 -132286558 - MIR SINE MIR -1 261 16 23 54 0 0 chr12 11502459 11502496 -132283959 + AT_rich Low_complexity Low_complexity 1 37 0 738 261 225 14 chr12 11503916 11504280 -132282175 - LTR16A1 LTR ERVL 0 457 17 2583 202 26 10 chr12 11504430 11505013 -132281442 + L1MD3 LINE L1 7399 7990 -5 1424 186 4 8 chr12 11505703 11505961 -132280494 - AluJo SINE Alu -13 299 43 238 279 204 35 chr12 11506382 11506554 -132279901 + L2 LINE L2 3113 3313 0 258 193 34 42 chr12 11506789 11506908 -132279547 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 273 156 0 chr12 11507662 11507739 -132278716 - L2 LINE L2 0 3272 3184 366 352 6 0 chr12 11508337 11508499 -132277956 - L1MC4a LINE L1 -1939 5869 5707 2534 200 39 15 chr12 11508528 11509063 -132277392 - MER74A LTR ERVL 0 558 11 28 29 0 0 chr12 11509200 11509235 -132277220 + AT_rich Low_complexity Low_complexity 1 35 0 384 264 0 0 chr12 11509913 11510034 -132276421 - L1MA4 LINE L1 -4 6296 6176 26 0 0 0 chr12 11511458 11511484 -132274971 + GC_rich Low_complexity Low_complexity 1 26 0 618 298 92 0 chr12 11514467 11514783 -132271672 - L1ME3A LINE L1 -208 5962 5618 973 225 131 0 chr12 11515032 11515276 -132271179 + AluJo SINE Alu 1 276 -36 371 337 18 12 chr12 11515385 11515548 -132270907 - HAL1 LINE L1 -954 1553 1390 421 221 106 53 chr12 11515640 11515848 -132270607 - L1MEd LINE L1 -4967 1152 934 21 36 0 0 chr12 11517469 11517497 -132268958 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 11517791 11517814 -132268641 + AT_rich Low_complexity Low_complexity 1 23 0 1589 194 0 3 chr12 11517836 11518124 -132268331 + AluJb SINE Alu 12 298 -14 419 192 21 175 chr12 11518553 11518787 -132267668 - L1ME1 LINE L1 -224 5938 5738 309 277 0 0 chr12 11518790 11518884 -132267571 + L1M4 LINE L1 4936 5029 -1117 1242 204 13 43 chr12 11519158 11519462 -132266993 - AluJb SINE Alu -7 295 1 478 346 178 15 chr12 11519615 11519947 -132266508 - L2 LINE L2 -1115 2199 1814 354 330 47 28 chr12 11520006 11520221 -132266234 + HERV16 LTR ERVL 1694 1912 -3084 2028 202 67 27 chr12 11520263 11520787 -132265668 + MER50 LTR ERV1 3 547 -187 1866 100 4 4 chr12 11521476 11521737 -132264718 - AluSc SINE Alu -5 304 44 24 32 0 0 chr12 11522184 11522215 -132264240 + AT_rich Low_complexity Low_complexity 1 31 0 873 185 43 96 chr12 11523042 11523323 -132263132 + LTR12 LTR ERV1 1 266 -448 879 328 6 20 chr12 11523344 11523686 -132262769 + HERV16 LTR ERVL 2832 3168 -2486 249 354 12 0 chr12 11523830 11523912 -132262543 - MER45 DNA AcHobo -1495 86 4 562 281 34 17 chr12 11524084 11524262 -132262193 - LTR36 LTR ERV1 0 611 431 801 161 142 51 chr12 11524360 11524614 -132261841 - LTR36 LTR ERV1 -332 279 3 21 0 0 0 chr12 11525108 11525129 -132261326 + AT_rich Low_complexity Low_complexity 1 21 0 466 304 23 35 chr12 11525322 11525493 -132260962 - LTR38-int LTR ERV1 -1494 292 124 215 309 71 36 chr12 11525800 11525968 -132260487 - L2 LINE L2 -5 3308 3135 209 135 27 0 chr12 11525971 11526008 -132260447 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr12 11529022 11529052 -132257403 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 11529824 11529846 -132256609 + AT_rich Low_complexity Low_complexity 1 22 0 251 260 26 13 chr12 11529907 11529984 -132256471 - L1ME3 LINE L1 -81 6081 6004 661 292 73 3 chr12 11530098 11530413 -132256042 - L1ME3 LINE L1 -206 5956 5620 21 0 0 0 chr12 11531119 11531140 -132255315 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr12 11531384 11531432 -132255023 + AT_rich Low_complexity Low_complexity 1 48 0 1039 198 31 55 chr12 11531653 11531930 -132254525 + LTR10B LTR ERV1 312 547 0 403 239 27 12 chr12 11531930 11532071 -132254384 - L1ME LINE L1 -347 5823 5678 2040 139 0 25 chr12 11532392 11532738 -132253717 - AluY SINE Alu 0 338 1 279 277 54 61 chr12 11534102 11534250 -132252205 + MIR SINE MIR 5 151 -111 1661 161 11 3 chr12 11534250 11534535 -132251920 + AluSx SINE Alu 1 287 -25 1687 175 31 3 chr12 11534721 11535012 -132251443 - AluJo SINE Alu -13 299 1 1407 341 57 32 chr12 11535089 11535679 -132250776 + HERVL40 LTR ERVL 2141 2714 -3050 1291 203 0 28 chr12 11535679 11535994 -132250461 + AluJb SINE Alu 3 309 0 1407 341 57 32 chr12 11535994 11536572 -132249883 + HERVL40 LTR ERVL 2714 3340 -2424 1844 107 0 4 chr12 11537243 11537495 -132248960 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 11537890 11537921 -132248534 + AT_rich Low_complexity Low_complexity 1 31 0 331 130 0 19 chr12 11538757 11538811 -132247644 + LTR12 LTR ERV1 1 53 -661 2107 76 7 4 chr12 11539858 11540171 -132246284 + AluY SINE Alu 4 317 0 252 0 0 0 chr12 11541885 11541913 -132244542 + (TA)n Simple_repeat Simple_repeat 2 29 0 195 100 0 0 chr12 11541912 11541942 -132244513 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 292 333 39 39 chr12 11543017 11543173 -132243282 + L2 LINE L2 3158 3313 0 427 220 158 46 chr12 11544011 11544270 -132242185 - L1MEd LINE L1 -4910 1209 922 1819 157 3 7 chr12 11545278 11545572 -132240883 - AluSq SINE Alu -19 294 2 728 334 30 34 chr12 11545822 11546323 -132240132 + HERVL40 LTR ERVL 2803 3301 -2353 21 0 0 0 chr12 11547635 11547656 -132238799 + GC_rich Low_complexity Low_complexity 1 21 0 1102 129 0 0 chr12 11547841 11548012 -132238443 - L1 LINE L1 -1307 4839 4669 266 305 32 19 chr12 11548073 11548227 -132238228 + L1MEc LINE L1 1419 1574 -4822 589 302 63 7 chr12 11548535 11548851 -132237604 + L1ME3 LINE L1 5618 5948 -216 2347 84 0 3 chr12 11548906 11549203 -132237252 + AluSx SINE Alu 1 296 -16 378 245 20 41 chr12 11549488 11549635 -132236820 + MER50 LTR ERV1 575 718 -16 419 209 0 44 chr12 11549765 11549856 -132236599 - AluJ SINE Alu -23 289 203 800 171 5 37 chr12 11549856 11550043 -132236412 + LTR36 LTR ERV1 1 181 -430 832 254 84 25 chr12 11550211 11550269 -132236186 + LTR36 LTR ERV1 293 346 -265 1820 218 81 11 chr12 11550269 11550741 -132235714 + LTR22 LTR ERVK 1 505 -4 832 254 84 25 chr12 11550741 11550966 -132235489 + LTR36 LTR ERV1 346 593 -18 853 211 0 84 chr12 11550981 11551208 -132235247 - AluJ SINE Alu -104 208 1 607 321 81 28 chr12 11551285 11551710 -132234745 + HERVL40 LTR ERVL 2106 2548 -2937 1636 150 14 24 chr12 11552045 11552356 -132234099 - AluSx SINE Alu 0 308 1 1330 339 53 43 chr12 11552452 11553011 -132233444 + HERVL40 LTR ERVL 2132 2709 -2945 1595 197 0 0 chr12 11553011 11553295 -132233160 + AluJb SINE Alu 3 286 -26 1330 339 53 43 chr12 11553295 11553805 -132232650 + HERVL40 LTR ERVL 2709 3212 -2442 239 270 51 73 chr12 11555029 11555166 -132231289 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11556162 11556212 -132230243 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11556332 11556375 -132230080 + (CATA)n Simple_repeat Simple_repeat 1 45 0 1395 101 0 0 chr12 11557241 11557430 -132229025 - L1P LINE L1 -5927 219 31 962 198 23 12 chr12 11557430 11557688 -132228767 + HSMAR2 DNA Mariner 1040 1300 -2 975 226 0 66 chr12 11558448 11558735 -132227720 + AluJo SINE Alu 12 279 -33 652 238 11 106 chr12 11559184 11559541 -132226914 + MLT1B LTR MaLR 50 372 -18 4439 203 27 29 chr12 11560374 11561393 -132225062 + HSMAR2 DNA Mariner 5 1023 -279 5364 111 5 68 chr12 11561393 11562275 -132224180 + LTR12 LTR ERV1 1 826 0 4439 203 27 29 chr12 11562275 11562376 -132224079 + HSMAR2 DNA Mariner 1023 1123 -179 363 333 19 6 chr12 11562378 11562537 -132223918 + HERVL40 LTR ERVL 109 269 -5261 331 370 54 33 chr12 11562619 11562954 -132223501 + HERVL40 LTR ERVL 1066 1407 -4123 261 57 0 0 chr12 11563097 11563132 -132223323 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1253 245 3 17 chr12 11563134 11563424 -132223031 - AluJo SINE Alu -14 288 3 300 250 13 0 chr12 11563788 11563864 -132222591 + HERVL40 LTR ERVL 2051 2127 -3403 259 243 90 48 chr12 11564000 11564189 -132222266 + L1ME LINE L1 699 895 -5175 573 231 7 14 chr12 11564268 11564415 -132222040 + MLT1B LTR MaLR 240 385 -5 214 305 24 0 chr12 11564420 11564502 -132221953 - L2 LINE L2 -924 2390 2307 3341 201 32 41 chr12 11565234 11566144 -132220311 + HSMAR2 DNA Mariner 3 904 -398 777 175 54 0 chr12 11566152 11566318 -132220137 - HSMAR2 DNA Mariner -283 1019 845 1906 107 11 4 chr12 11566318 11566599 -132219856 + L1PB1 LINE L1 5866 6148 -3 1258 205 31 0 chr12 11566615 11566908 -132219547 + HSMAR2 DNA Mariner 1001 1302 0 1128 234 0 64 chr12 11567660 11567972 -132218483 + AluJo SINE Alu 1 292 -10 561 232 28 113 chr12 11568400 11568762 -132217693 + MLT1B LTR MaLR 47 377 -13 271 247 41 31 chr12 11568762 11568859 -132217596 - L2 LINE L2 -910 2404 2307 2140 90 35 39 chr12 11569635 11569947 -132216508 + AluY SINE Alu 1 311 0 4224 202 37 26 chr12 11569948 11571018 -132215437 + HSMAR2 DNA Mariner 42 1123 -179 393 271 25 0 chr12 11571020 11571138 -132215317 + HERVL40 LTR ERVL 109 229 -5301 325 213 0 0 chr12 11572306 11572367 -132214088 - MER69 DNA AcHobo -97 80 20 245 331 58 16 chr12 11573016 11573137 -132213318 + HAL1 LINE L1 19 144 -2363 204 111 0 0 chr12 11573442 11573478 -132212977 + (TC)n Simple_repeat Simple_repeat 1 36 0 826 274 73 0 chr12 11573817 11574076 -132212379 - MLT1G1 LTR MaLR -311 284 7 326 269 200 29 chr12 11574992 11575167 -132211288 + MIR SINE MIR 2 206 -56 6361 35 1 0 chr12 11575586 11576383 -132210072 - L1PA4 LINE L1 -3 6152 5355 242 327 48 43 chr12 11576383 11576591 -132209864 - L2 LINE L2 -625 2689 2481 270 230 0 27 chr12 11576635 11576709 -132209746 + MLT1B LTR MaLR 1 72 -318 218 357 32 45 chr12 11581598 11581752 -132204703 - MER5A DNA MER1_type -5 184 33 326 315 7 0 chr12 11582296 11582446 -132204009 - L1MC/D LINE L1 -316 5805 5668 1755 171 0 0 chr12 11583008 11583289 -132203166 - AluSx SINE Alu -31 281 1 401 287 84 40 chr12 11583600 11583802 -132202653 + MIR SINE MIR 18 228 -34 477 383 70 11 chr12 11583843 11584311 -132202144 + L2 LINE L2 1366 1861 -1453 3827 201 19 6 chr12 11584386 11585246 -132201209 + HSMAR2 DNA Mariner 5 875 -427 693 200 119 117 chr12 11585740 11586244 -132200211 - MLT1D LTR MaLR 0 505 1 949 207 108 16 chr12 11586447 11586819 -132199636 - L1MDa LINE L1 -3986 2554 2149 370 268 31 8 chr12 11586819 11586946 -132199509 - MLT1D LTR MaLR -56 449 320 1591 263 68 52 chr12 11587011 11588063 -132198392 - L1MDa LINE L1 -4411 2129 1061 267 208 52 39 chr12 11588119 11588196 -132198259 - HERVL40 LTR ERVL -3403 2127 2050 1326 248 7 10 chr12 11588559 11588866 -132197589 + AluJo SINE Alu 1 306 -6 4552 199 39 13 chr12 11589577 11590668 -132195787 - HSMAR2 DNA Mariner -179 1123 5 1879 152 20 0 chr12 11590955 11591258 -132195197 + AluSg SINE Alu 1 309 -1 296 247 199 60 chr12 11591515 11591681 -132194774 + MIR SINE MIR 2 190 -72 399 322 82 46 chr12 11592149 11592478 -132193977 - L2 LINE L2 -530 2784 2444 1087 253 15 52 chr12 11592522 11592922 -132193533 + MLT1B LTR MaLR 1 385 -5 188 297 33 11 chr12 11592927 11593018 -132193437 - L2 LINE L2 -924 2390 2298 1289 207 45 6 chr12 11593738 11594072 -132192383 + HSMAR2 DNA Mariner 3 349 -953 36635 84 7 6 chr12 11594079 11600214 -132186241 + L1PA5 LINE L1 11 6151 -3 2375 179 26 43 chr12 11600242 11600824 -132185631 + HSMAR2 DNA Mariner 333 904 -398 878 144 0 0 chr12 11600832 11600971 -132185484 - HSMAR2 DNA Mariner -283 1019 881 1717 126 11 4 chr12 11601005 11601283 -132185172 + L1PB1 LINE L1 5871 6150 -1 1097 223 10 10 chr12 11601304 11601604 -132184851 + HSMAR2 DNA Mariner 1001 1300 -2 1076 212 3 57 chr12 11602356 11602639 -132183816 + AluJo SINE Alu 9 276 -36 381 93 0 0 chr12 11602639 11602693 -132183762 + (TG)n Simple_repeat Simple_repeat 1 54 0 246 239 0 0 chr12 11602698 11602769 -132183686 + (TA)n Simple_repeat Simple_repeat 2 72 0 249 132 57 0 chr12 11602769 11602822 -132183633 + L1MCa LINE L1 2006 2061 -4365 252 253 0 0 chr12 11602826 11602901 -132183554 + (TA)n Simple_repeat Simple_repeat 2 76 0 650 250 8 108 chr12 11603347 11603699 -132182756 + MLT1B LTR MaLR 57 373 -17 222 220 0 34 chr12 11603716 11603775 -132182680 - L2 LINE L2 -924 2390 2334 257 183 14 84 chr12 11604286 11604357 -132182098 + HERVL40 LTR ERVL 2061 2126 -3404 383 271 64 20 chr12 11604493 11604696 -132181759 + L1ME LINE L1 699 910 -5160 573 261 23 11 chr12 11604730 11604906 -132181549 + MLT1B LTR MaLR 208 385 -5 222 244 37 12 chr12 11604911 11604993 -132181462 - L2 LINE L2 -924 2390 2307 3508 200 30 31 chr12 11605732 11606629 -132179826 + HSMAR2 DNA Mariner 3 898 -404 767 170 27 0 chr12 11606643 11606790 -132179665 - HSMAR2 DNA Mariner -283 1019 869 1831 121 11 4 chr12 11606802 11607083 -132179372 + L1PB1 LINE L1 5866 6148 -3 1386 189 17 0 chr12 11607099 11607396 -132179059 + HSMAR2 DNA Mariner 1001 1302 0 1200 236 0 45 chr12 11608152 11608461 -132177994 + AluJo SINE Alu 1 295 -7 697 246 13 104 chr12 11608887 11609266 -132177189 + MLT1B LTR MaLR 47 396 0 192 229 48 48 chr12 11609266 11609349 -132177106 - L2 LINE L2 -924 2390 2308 2058 113 37 7 chr12 11610123 11610423 -132176032 + AluY SINE Alu 1 309 -2 4229 212 28 25 chr12 11610424 11611503 -132174952 + HSMAR2 DNA Mariner 42 1123 -179 262 227 67 50 chr12 11611505 11611624 -132174831 + HERVL40 LTR ERVL 109 229 -5301 288 246 43 0 chr12 11612788 11612857 -132173598 - MER69 DNA AcHobo -97 80 9 240 276 60 85 chr12 11613500 11613699 -132172756 + HAL1 LINE L1 19 212 -2295 36729 42 1 1 chr12 11614252 11619787 -132166668 - L1PA4 LINE L1 -1 6154 623 779 42 0 0 chr12 11619787 11619883 -132166572 - L1PA4 LINE L1 -6050 96 1 859 257 82 0 chr12 11619921 11620178 -132166277 - MLT1G1 LTR MaLR -311 284 7 365 247 202 51 chr12 11621115 11621293 -132165162 + MIR SINE MIR 2 206 -56 432 361 30 23 chr12 11621617 11621919 -132164536 - L2 LINE L2 -530 2784 2481 289 216 0 27 chr12 11621963 11622037 -132164418 + MLT1B LTR MaLR 1 72 -318 196 339 78 43 chr12 11624414 11624644 -132161811 - L2 LINE L2 -490 2824 2587 302 327 39 46 chr12 11626449 11626602 -132159853 - MER5A DNA MER1_type -5 184 33 21 36 0 0 chr12 11627069 11627097 -132159358 + AT_rich Low_complexity Low_complexity 1 28 0 321 327 16 0 chr12 11627110 11627297 -132159158 - L1MC/D LINE L1 -316 5805 5668 1855 171 0 0 chr12 11627730 11628029 -132158426 - AluSx SINE Alu -13 299 1 278 306 91 0 chr12 11628395 11628516 -132157939 + MIR SINE MIR 73 204 -58 768 343 78 15 chr12 11628658 11629250 -132157205 + L2 LINE L2 1444 2072 -1242 269 323 58 53 chr12 11629259 11629485 -132156970 + L2 LINE L2 2375 2601 -713 2546 241 17 17 chr12 11629787 11630512 -132155943 - L1PB4 LINE L1 -4 6152 5428 3047 72 0 0 chr12 11630518 11630920 -132155535 - L1PA8 LINE L1 -2 6170 5769 40916 33 21 1 chr12 11630941 11636970 -132149485 - L1PA2 LINE L1 0 6155 2 2173 77 3 0 chr12 11636979 11637279 -132149176 - L1PA8 LINE L1 -391 5781 5481 1229 134 0 0 chr12 11637279 11637458 -132148997 - AluSg/x SINE Alu -7 305 127 1799 144 35 3 chr12 11637471 11637755 -132148700 - AluSq SINE Alu -20 293 1 2462 94 10 0 chr12 11637755 11638260 -132148195 - L1PA8 LINE L1 -663 5491 4982 41196 47 4 2 chr12 11638265 11644390 -132142065 - L1PA4 LINE L1 -10 6145 7 6617 55 3 13 chr12 11644397 11645721 -132140734 - L1P2 LINE L1 -373 5781 4474 2483 40 15 0 chr12 11645720 11646045 -132140410 + L1P2 LINE L1 4125 4454 -1692 * 12414 100 7 1 chr12 11646049 11647976 -132138479 - L1PA8 LINE L1 -1158 4988 3051 198 71 0 0 chr12 11647976 11648004 -132138451 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 3088 74 0 0 chr12 11648007 11648411 -132138044 - L1PA6 LINE L1 -19 6135 5732 3771 190 26 32 chr12 11649182 11650089 -132136366 + HSMAR2 DNA Mariner 3 904 -398 942 163 17 0 chr12 11650097 11650269 -132136186 - HSMAR2 DNA Mariner -283 1019 845 1660 117 10 67 chr12 11650269 11650569 -132135886 + L1PB1 LINE L1 5866 6148 -3 1045 205 34 24 chr12 11650591 11650888 -132135567 + HSMAR2 DNA Mariner 1001 1300 -2 1098 231 10 70 chr12 11651646 11651733 -132134722 + AluJo SINE Alu 1 92 -210 2477 65 7 10 chr12 11651733 11652041 -132134414 + AluY SINE Alu 1 307 -4 1098 231 10 70 chr12 11652041 11652265 -132134190 + AluJo SINE Alu 92 293 -9 791 265 6 74 chr12 11652690 11653041 -132133414 + MLT1B LTR MaLR 47 373 -17 240 289 31 10 chr12 11653044 11653141 -132133314 - L2 LINE L2 -909 2405 2307 4754 193 23 28 chr12 11653850 11654974 -132131481 + HSMAR2 DNA Mariner 5 1123 -179 296 316 38 19 chr12 11654976 11655134 -132131321 + HERVL40 LTR ERVL 109 269 -5261 201 94 0 0 chr12 11655682 11655714 -132130741 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1290 231 7 21 chr12 11655716 11656006 -132130449 - AluJo SINE Alu -14 288 3 1389 291 39 45 chr12 11656568 11657584 -132128871 + L1MDa LINE L1 1120 2129 -4411 496 211 23 16 chr12 11657649 11657777 -132128678 + MLT1D LTR MaLR 321 449 -56 225 213 138 0 chr12 11657777 11657871 -132128584 + L1MDa LINE L1 2149 2255 -4285 293 246 0 0 chr12 11658424 11658485 -132127970 - MER69 DNA AcHobo -97 80 20 188 291 82 45 chr12 11659063 11659173 -132127282 - L2 LINE L2 -499 2815 2702 * 246 265 43 74 chr12 11659139 11659301 -132127154 + HAL1 LINE L1 23 179 -2328 233 106 0 21 chr12 11659546 11659593 -132126862 + (TC)n Simple_repeat Simple_repeat 1 46 0 28 0 0 0 chr12 11659667 11659695 -132126760 + AT_rich Low_complexity Low_complexity 1 28 0 2563 45 0 0 chr12 11659696 11660006 -132126449 - L1PA5 LINE L1 -9 6145 5836 297 68 0 0 chr12 11660142 11660186 -132126269 + (TC)n Simple_repeat Simple_repeat 1 44 0 206 411 33 0 chr12 11660202 11660382 -132126073 + MIR SINE MIR 67 252 -10 931 239 80 0 chr12 11660529 11660792 -132125663 - MLT1G1 LTR MaLR -311 284 1 259 279 188 48 chr12 11661744 11661909 -132124546 + MIR SINE MIR 2 189 -73 266 94 57 0 chr12 11662059 11662112 -132124343 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 224 333 64 18 chr12 11662313 11662484 -132123971 - L2 LINE L2 -655 2659 2481 298 216 0 27 chr12 11662534 11662608 -132123847 + MLT1B LTR MaLR 1 72 -318 180 370 34 63 chr12 11665097 11665448 -132121007 - L2 LINE L2 -455 2859 2519 319 325 32 45 chr12 11667497 11667651 -132118804 - MER5A DNA MER1_type -5 184 33 319 234 27 120 chr12 11668115 11668299 -132118156 - L1MC/D LINE L1 -320 5801 5711 1700 192 3 3 chr12 11668893 11669190 -132117265 - AluSx SINE Alu -15 297 1 310 298 32 0 chr12 11669556 11669650 -132116805 + MIR SINE MIR 73 169 -93 851 321 93 21 chr12 11669744 11670410 -132116045 + L2 LINE L2 1359 2072 -1242 201 338 183 43 chr12 11670419 11670883 -132115572 + L2 LINE L2 2375 2903 -411 2622 236 27 7 chr12 11670939 11671647 -132114808 - L1PB4 LINE L1 -3 6153 5432 5187 82 0 0 chr12 11671657 11672350 -132114105 - L1PA8 LINE L1 -2 6170 5478 1276 118 0 16 chr12 11672350 11672525 -132113930 - AluSc SINE Alu -10 299 126 1795 155 31 7 chr12 11672527 11672818 -132113637 - AluSq SINE Alu -15 298 1 27847 129 15 64 chr12 11672818 11678580 -132107875 - L1PA8 LINE L1 -681 5491 25 375 250 190 43 chr12 11679351 11679535 -132106920 + MIR SINE MIR 3 213 -49 474 320 90 20 chr12 11680039 11680339 -132106116 - L2 LINE L2 -550 2764 2444 750 235 87 69 chr12 11680386 11680764 -132105691 + MLT1B LTR MaLR 1 385 -5 1541 216 10 8 chr12 11681236 11681635 -132104820 - L1M2 LINE L1 -4353 2496 2097 890 247 75 11 chr12 11682220 11682487 -132103968 + MLT1G1 LTR MaLR 1 284 -311 204 354 62 8 chr12 11682676 11682806 -132103649 - MIR SINE MIR -54 208 72 484 191 65 10 chr12 11682807 11683006 -132103449 - L1 LINE L1 -1704 4442 4233 1244 87 22 0 chr12 11683025 11683209 -132103246 - L1PA13 LINE L1 -5 6158 5971 358 187 13 0 chr12 11683232 11683307 -132103148 + L1P LINE L1 4507 4582 -1564 4806 80 1 53 chr12 11683307 11684017 -132102438 + L1PA8 LINE L1 5492 6170 -2 367 155 113 10 chr12 11684019 11684116 -132102339 + L1MA7 LINE L1 6140 6246 -45 369 287 49 0 chr12 11684738 11684860 -132101595 - HAL1 LINE L1 -2357 150 23 341 200 15 0 chr12 11685518 11685583 -132100872 + MER69A DNA AcHobo 15 80 -97 720 221 248 45 chr12 11687521 11687732 -132098723 - MLT1D LTR MaLR 0 505 338 299 25 25 0 chr12 11687732 11687772 -132098683 + (CACAT)n Simple_repeat Simple_repeat 3 43 0 720 221 248 45 chr12 11687772 11687980 -132098475 - MLT1D LTR MaLR -167 338 1 1046 205 101 11 chr12 11688183 11688559 -132097896 - L1MDb LINE L1 -3986 2420 2011 1621 260 42 50 chr12 11688802 11688878 -132097577 - L1MDb LINE L1 -4473 1933 1858 2388 77 0 0 chr12 11688878 11689176 -132097279 - AluY SINE Alu -13 298 1 1621 260 42 50 chr12 11689176 11690105 -132096350 - L1MDb LINE L1 -4548 1858 938 271 300 77 65 chr12 11690225 11690472 -132095983 - HERVL40 LTR ERVL -3913 1617 1368 1414 225 7 10 chr12 11690591 11690893 -132095562 + AluJo SINE Alu 1 301 -1 5129 197 16 4 chr12 11691613 11692718 -132093737 - HSMAR2 DNA Mariner -179 1123 5 1350 217 18 53 chr12 11693523 11693919 -132092536 - MLT1B LTR MaLR -8 382 1 623 349 82 11 chr12 11693928 11694283 -132092172 + L2 LINE L2 2400 2779 -535 285 264 118 27 chr12 11695486 11695815 -132090640 + HAL1 LINE L1 810 1168 -1339 251 293 41 0 chr12 11695840 11695963 -132090492 + HAL1 LINE L1 1220 1347 -1160 349 275 0 0 chr12 11695975 11696066 -132090389 - Zaphod DNA AcHobo -1 4030 3940 3239 221 22 19 chr12 11696373 11696940 -132089515 + L1PB4 LINE L1 5099 5663 -635 2052 25 0 4 chr12 11696940 11697176 -132089279 + AluYa5 SINE Alu 76 310 -1 3239 221 22 19 chr12 11697176 11697675 -132088780 + L1PB4 LINE L1 5663 6295 -3 201 121 0 0 chr12 11697716 11697749 -132088706 + (GAA)n Simple_repeat Simple_repeat 3 35 0 506 224 72 0 chr12 11697791 11697943 -132088512 - MLT1B LTR MaLR -227 163 1 618 348 80 6 chr12 11697952 11698314 -132088141 + L2 LINE L2 2400 2788 -526 227 266 73 64 chr12 11698784 11698893 -132087562 - MIR SINE MIR -38 224 115 1925 158 0 0 chr12 11699124 11699422 -132087033 - AluJb SINE Alu -14 298 1 356 105 0 10 chr12 11699738 11699986 -132086469 + AluSx SINE Alu 1 299 -2 287 385 17 6 chr12 11700172 11700351 -132086104 - MIR SINE MIR -4 258 78 354 296 80 0 chr12 11700564 11700689 -132085766 - HAL1 LINE L1 -2363 144 10 2081 171 84 0 chr12 11700744 11701137 -132085318 + MSTB LTR MaLR 1 426 0 429 268 0 49 chr12 11701816 11701980 -132084475 + MER69A DNA AcHobo 21 176 -1 249 229 34 51 chr12 11702068 11702186 -132084269 - L1MC5 LINE L1 -520 7441 7326 519 192 13 46 chr12 11703026 11703177 -132083278 - L1MA10 LINE L1 0 6334 6189 2853 121 32 2 chr12 11703767 11704237 -132082218 + L1MA5A LINE L1 5633 6116 -181 1670 232 59 47 chr12 11705828 11706384 -132080071 + MLT1F1 LTR MaLR 1 563 -4 242 287 140 22 chr12 11707265 11707401 -132079054 + MLT1K LTR MaLR 428 579 -9 520 280 8 0 chr12 11707711 11707836 -132078619 - MER5B DNA MER1_type -2 176 51 656 215 42 64 chr12 11707836 11708124 -132078331 - L1MD3 LINE L1 -5 8037 7766 196 269 97 0 chr12 11708566 11708659 -132077796 + L3 LINE CR1 656 757 -820 2516 110 0 5 chr12 11710848 11711220 -132075235 - L1PB1 LINE L1 -1 6150 5781 234 217 0 48 chr12 11711233 11711316 -132075139 + L1MCa LINE L1 1991 2069 -4357 13979 162 42 45 chr12 11711333 11716439 -132070016 - L1P5 LINE L1 -361 6506 1423 1478 150 73 7 chr12 11716823 11717109 -132069346 + LTR19A LTR ERV1 1 305 -181 25 83 0 0 chr12 11717328 11717388 -132069067 + AT_rich Low_complexity Low_complexity 1 60 0 1274 161 4 12 chr12 11717388 11717630 -132068825 - L1MA9 LINE L1 -2 6310 6071 2921 199 88 22 chr12 11718948 11719642 -132066813 - L1MC3 LINE L1 0 7785 7046 2895 181 79 28 chr12 11719656 11720292 -132066163 - L1MC3 LINE L1 -924 6861 6194 2055 28 0 0 chr12 11720279 11720529 -132065926 - L1P LINE L1 -1586 4560 4311 * 7691 21 1 0 chr12 11720529 11722086 -132064369 + L1PA3 LINE L1 4628 6186 0 1058 177 57 34 chr12 11722098 11722363 -132064092 - L1MC3 LINE L1 -1573 6212 5942 1268 107 0 6 chr12 11722463 11722641 -132063814 + L1MC/D LINE L1 5458 5634 -699 3169 183 8 13 chr12 11722644 11723261 -132063194 - L1MC3 LINE L1 -1852 5933 5320 5274 149 18 2 chr12 11723280 11724133 -132062322 - L1MC1 LINE L1 -9 6324 5459 678 223 22 112 chr12 11725542 11725684 -132060771 + MIR SINE MIR 18 126 -136 2135 110 0 17 chr12 11725684 11725985 -132060470 - AluSq SINE Alu -17 296 1 678 223 22 112 chr12 11725985 11726111 -132060344 + MIR SINE MIR 126 262 0 4309 217 80 55 chr12 11726828 11726965 -132059490 - L1MC4 LINE L1 0 8042 7910 210 71 0 0 chr12 11726965 11726993 -132059462 + (CA)n Simple_repeat Simple_repeat 1 28 0 4309 217 80 55 chr12 11726993 11727419 -132059036 - L1MC4 LINE L1 -132 7910 7496 231 36 0 0 chr12 11727419 11727447 -132059008 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4309 217 80 55 chr12 11727447 11728313 -132058142 - L1MC4 LINE L1 -546 7496 6569 1780 140 117 26 chr12 11728313 11728655 -132057800 + THE1C LTR MaLR 1 373 -2 4309 217 80 55 chr12 11728655 11728753 -132057702 - L1MC4 LINE L1 -1473 6569 6475 428 181 14 0 chr12 11728753 11728825 -132057630 + MER2 DNA MER2_type 1 73 -272 2014 176 176 5 chr12 11728847 11729274 -132057181 + MER21B LTR ERV1 1 500 -363 2917 236 89 47 chr12 11729312 11729750 -132056705 - L1MC4a LINE L1 -1354 6454 6036 1941 172 7 0 chr12 11729750 11730058 -132056397 - AluSg SINE Alu 0 310 1 2917 236 89 47 chr12 11730058 11730481 -132055974 - L1MC4a LINE L1 -1772 6036 5539 2016 154 75 44 chr12 11730481 11730962 -132055493 + LTR54B LTR ERV1 1 496 -2 2917 236 89 47 chr12 11730962 11731145 -132055310 - L1MC4a LINE L1 -2269 5539 5365 346 288 23 45 chr12 11731491 11731623 -132054832 - MER5A DNA MER1_type -18 171 43 2734 162 40 12 chr12 11731779 11732273 -132054182 - L1MB3 LINE L1 -180 6003 5496 639 39 0 0 chr12 11732273 11732351 -132054104 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 2468 167 36 9 chr12 11732351 11732870 -132053585 - LTR27 LTR ERV1 0 501 2 428 181 0 11 chr12 11732884 11732978 -132053477 + CT-rich Low_complexity Low_complexity 3 95 0 783 158 79 26 chr12 11732983 11733342 -132053113 - L1MB3 LINE L1 -685 5495 4504 348 157 0 14 chr12 11733343 11733413 -132053042 + MLT1D LTR MaLR 437 505 0 446 151 55 97 chr12 11733668 11733803 -132052652 + MLT1H LTR MaLR 445 549 0 368 325 55 48 chr12 11733807 11734078 -132052377 + L2 LINE L2 3032 3304 -9 2057 147 0 0 chr12 11734373 11734680 -132051775 - AluSx SINE Alu -5 307 1 957 245 82 35 chr12 11735063 11735430 -132051025 - L2 LINE L2 -349 2965 2582 1624 128 157 20 chr12 11735445 11735750 -132050705 + MSTA LTR MaLR 82 428 0 802 217 7 0 chr12 11735750 11735902 -132050553 - AluJo SINE Alu -157 155 3 622 253 41 0 chr12 11736098 11736244 -132050211 + MIR SINE MIR 111 262 0 351 344 78 13 chr12 11736424 11736578 -132049877 + MER97b DNA MER1_type? 14 177 -876 1946 125 38 0 chr12 11737429 11737716 -132048739 + AluSx SINE Alu 1 298 -14 327 348 30 6 chr12 11738732 11738896 -132047559 + HAL1 LINE L1 1525 1692 -815 21 57 0 0 chr12 11739024 11739059 -132047396 + AT_rich Low_complexity Low_complexity 1 35 0 1524 178 30 7 chr12 11739769 11740038 -132046417 + AluJo SINE Alu 12 286 -26 261 333 21 0 chr12 11740387 11740483 -132045972 + MIR SINE MIR 150 247 -15 626 137 20 0 chr12 11741235 11741337 -132045118 - MLT2B1 LTR ERVL -358 162 59 5422 109 6 1 chr12 11741337 11742119 -132044336 - L1PA13 LINE L1 -24 6139 5354 1842 189 45 8 chr12 11742247 11742629 -132043826 + MSTD LTR MaLR 1 396 0 2662 239 34 32 chr12 11742643 11743371 -132043084 + MSTD-int LTR MaLR 99 828 -907 2456 218 47 10 chr12 11743376 11743891 -132042564 + MSTD-int LTR MaLR 1202 1735 0 1577 199 94 0 chr12 11743891 11744253 -132042202 + MSTD LTR MaLR 1 396 0 307 298 71 94 chr12 11744407 11744662 -132041793 + L3 LINE CR1 305 553 -1024 694 149 0 0 chr12 11745347 11745454 -132041001 - AluJb SINE Alu -205 107 1 460 294 110 16 chr12 11745513 11745768 -132040687 - L1M4 LINE L1 -2034 4112 3834 481 306 165 65 chr12 11745817 11746478 -132039977 + L2 LINE L2 1893 2619 -695 295 216 10 10 chr12 11746522 11746619 -132039836 + CT-rich Low_complexity Low_complexity 4 100 0 24 53 0 0 chr12 11749191 11749229 -132037226 + AT_rich Low_complexity Low_complexity 1 38 0 2280 117 7 0 chr12 11749397 11749705 -132036750 - AluSx SINE Alu -2 310 1 2303 97 3 10 chr12 11751178 11751486 -132034969 - AluSx SINE Alu -6 306 1 862 65 36 50 chr12 11752114 11752253 -132034202 - L1PA13 LINE L1 0 6163 6027 271 273 10 50 chr12 11752949 11753048 -132033407 - L2 LINE L2 -4 3309 3215 515 179 0 54 chr12 11753262 11753374 -132033081 + MER5B DNA MER1_type 73 178 0 206 219 0 0 chr12 11755215 11755256 -132031199 + CT-rich Low_complexity Low_complexity 2 42 0 419 120 37 37 chr12 11756550 11756658 -132029797 + CT-rich Low_complexity Low_complexity 3 110 0 2200 104 0 7 chr12 11756663 11756951 -132029504 - AluSp SINE Alu -25 288 3 454 118 0 0 chr12 11758330 11758398 -132028057 - AluJ/FRAM SINE Alu -17 295 228 2105 176 26 3 chr12 11758906 11759258 -132027197 - MLT1A1 LTR MaLR -5 360 1 435 284 77 0 chr12 11760045 11760200 -132026255 + MIR SINE MIR 86 252 -10 408 214 92 23 chr12 11760595 11760726 -132025729 - L2 LINE L2 0 3313 3174 195 42 0 0 chr12 11760904 11760928 -132025527 + (TA)n Simple_repeat Simple_repeat 2 25 0 299 181 0 35 chr12 11760978 11761094 -132025361 + (TA)n Simple_repeat Simple_repeat 1 112 0 21 57 0 0 chr12 11762516 11762551 -132023904 + AT_rich Low_complexity Low_complexity 1 35 0 233 344 0 0 chr12 11763832 11763893 -132022562 + MER45 DNA AcHobo 39 99 -1482 1400 325 79 44 chr12 11763897 11764468 -132021987 - ERVL LTR ERVL -2359 3295 2746 1619 199 0 0 chr12 11764468 11764775 -132021680 - AluJb SINE Alu 0 309 3 1400 325 79 44 chr12 11764775 11765361 -132021094 - ERVL LTR ERVL -2908 2746 2096 1562 189 31 3 chr12 11765432 11765723 -132020732 + AluJo SINE Alu 1 299 -13 270 239 122 55 chr12 11765917 11766155 -132020300 + L1MEd LINE L1 922 1175 -4944 1603 70 14 5 chr12 11766524 11766738 -132019717 + AluY SINE Alu 83 298 -13 544 283 72 13 chr12 11766946 11767264 -132019191 + L1ME3 LINE L1 5620 5956 -206 266 266 25 13 chr12 11767374 11767453 -132019002 + L1ME3 LINE L1 6002 6081 -81 387 106 0 0 chr12 11771331 11771397 -132015058 + (TA)n Simple_repeat Simple_repeat 2 67 0 535 272 24 35 chr12 11771839 11772008 -132014447 + LTR38-int LTR ERV1 124 290 -1496 811 160 148 40 chr12 11772712 11772962 -132013493 + LTR36 LTR ERV1 3 279 -332 620 298 27 18 chr12 11773012 11773237 -132013218 + LTR36 LTR ERV1 385 611 0 273 329 12 0 chr12 11773409 11773491 -132012964 + MER45 DNA AcHobo 4 86 -1495 404 312 0 7 chr12 11773635 11773773 -132012682 - ERVL LTR ERVL -2557 3207 3071 250 333 0 0 chr12 11773845 11773932 -132012523 - ERVL LTR ERVL -2631 3023 2937 1716 144 10 38 chr12 11773969 11774261 -132012194 + AluSx SINE Alu 2 285 -27 24 0 0 0 chr12 11774261 11774285 -132012170 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 11774465 11774486 -132011969 + AT_rich Low_complexity Low_complexity 1 21 0 810 323 92 23 chr12 11774505 11775115 -132011340 - ERVL LTR ERVL -2816 2687 2018 1020 223 3 94 chr12 11775120 11775347 -132011108 + AluJo SINE Alu 1 192 -120 1578 183 68 122 chr12 11775347 11775993 -132010462 - LTR36 LTR ERV1 0 611 1 1020 223 3 94 chr12 11775993 11776083 -132010372 + AluJo SINE Alu 192 289 -23 3025 186 57 58 chr12 11776201 11776926 -132009529 - MER50 LTR ERV1 -8 726 3 583 338 180 3 chr12 11777252 11777580 -132008875 + L2 LINE L2 1814 2199 -1115 1322 219 14 7 chr12 11777737 11778025 -132008430 + AluJb SINE Alu 5 294 -18 21 57 0 0 chr12 11778092 11778127 -132008328 + AT_rich Low_complexity Low_complexity 1 35 0 1342 246 22 16 chr12 11778268 11778719 -132007736 - L1M4 LINE L1 -1117 5029 4576 1587 167 45 7 chr12 11778907 11779195 -132007260 + AluJo SINE Alu 1 299 -13 311 256 98 74 chr12 11779296 11779499 -132006956 - MIR SINE MIR -50 212 5 527 251 75 63 chr12 11780201 11780520 -132005935 - HAL1 LINE L1 -273 2234 1912 228 298 138 0 chr12 11782071 11782165 -132004290 - MIR SINE MIR -119 143 37 2527 33 0 7 chr12 11782563 11782865 -132003590 - AluY SINE Alu -11 300 1 902 81 17 23 chr12 11784664 11784836 -132001619 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1289 274 73 12 chr12 11785164 11785307 -132001148 + L1ME3A LINE L1 -542 4294966887 -6273 2153 77 0 7 chr12 11785307 11785581 -132000874 + AluY SINE Alu 27 298 -13 1289 274 73 12 chr12 11785581 11785860 -132000595 + L1ME3A LINE L1 -409 4294967202 -5958 1760 222 90 13 chr12 11785863 11786332 -132000123 + MLT1D LTR MaLR 1 505 0 601 281 107 20 chr12 11786979 11787369 -131999086 + L1ME3A LINE L1 259 721 -5143 537 307 45 14 chr12 11787440 11787727 -131998728 + L1ME3A LINE L1 847 1142 -5240 1031 179 146 37 chr12 11787746 11788277 -131998178 + L1ME1 LINE L1 5467 6334 0 1891 185 29 43 chr12 11788512 11788967 -131997488 - MLT2B2 LTR ERVL 0 414 1 280 280 103 0 chr12 11789255 11789362 -131997093 + LTR67 LTR ERVL 406 523 -34 311 291 108 27 chr12 11789645 11789793 -131996662 - L1MC4a LINE L1 -1574 6234 6075 466 92 0 15 chr12 11789872 11789937 -131996518 - U6 snRNA snRNA -43 64 1 446 236 50 29 chr12 11789978 11790118 -131996337 - L1MC4a LINE L1 -1879 5929 5787 592 210 49 0 chr12 11790281 11790424 -131996031 - MLT1J2 LTR MaLR -300 150 1 831 273 114 17 chr12 11791711 11792063 -131994392 - MLT1J1 LTR MaLR -21 425 40 1985 117 0 14 chr12 11792262 11792573 -131993882 + AluSg SINE Alu 1 307 0 201 147 0 0 chr12 11795184 11795218 -131991237 + (CACCAT)n Simple_repeat Simple_repeat 5 38 0 2176 73 0 4 chr12 11795905 11796179 -131990276 + AluY SINE Alu 25 297 -14 358 290 128 40 chr12 11796400 11796848 -131989607 + L1ME3A LINE L1 1120 1588 -4796 657 293 58 7 chr12 11797166 11797460 -131988995 + L1ME3A LINE L1 5638 5946 -224 2196 189 169 38 chr12 11798065 11798758 -131987697 + LTR48 LTR ERV1 1 784 -3 23 33 0 0 chr12 11798986 11799016 -131987439 + AT_rich Low_complexity Low_complexity 1 30 0 872 318 65 42 chr12 11799115 11800077 -131986378 - ERVL LTR ERVL -4636 1128 70 1531 15 0 46 chr12 11800760 11800956 -131985499 + L1PA4 LINE L1 5968 6154 -1 303 340 75 0 chr12 11801091 11801291 -131985164 + L1ME3A LINE L1 4011 4225 -2157 7586 33 0 0 chr12 11802201 11803681 -131982774 - L1PA3 LINE L1 0 6155 4676 13055 28 2 0 chr12 11803681 11805245 -131981210 + L1PA3 LINE L1 3085 4651 -1495 444 326 83 37 chr12 11805245 11805548 -131980907 + L1ME3A LINE L1 4302 4590 -1792 1688 168 11 3 chr12 11805548 11805833 -131980622 + AluJb SINE Alu 1 287 -25 444 326 83 37 chr12 11805833 11806434 -131980021 + L1ME3A LINE L1 4590 5368 -1014 1999 160 0 10 chr12 11807545 11807858 -131978597 + AluSx SINE Alu 3 312 0 3451 225 103 13 chr12 11807926 11809147 -131977308 + L1PBa LINE L1 8 1482 -5381 5380 138 71 10 chr12 11809189 11810383 -131976072 - L1 LINE L1 -3645 3920 2664 820 274 21 12 chr12 11810395 11810734 -131975721 - L1M4 LINE L1 -1229 4917 4576 1588 185 3 18 chr12 11810924 11811210 -131975245 + AluJo SINE Alu 1 282 -30 394 316 53 38 chr12 11811328 11811537 -131974918 - MIR SINE MIR -50 212 1 207 167 0 0 chr12 11811941 11811977 -131974478 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 49 0 0 chr12 11812915 11812956 -131973499 + AT_rich Low_complexity Low_complexity 1 41 0 483 279 104 28 chr12 11813115 11813430 -131973025 + L1ME3A LINE L1 5735 6090 -320 1697 177 3 3 chr12 11813966 11814260 -131972195 - AluJb SINE Alu -18 294 1 622 218 78 0 chr12 11816130 11816272 -131970183 - AluJo SINE Alu -159 153 1 604 293 102 3 chr12 11816520 11816834 -131969621 + L1ME3A LINE L1 5618 5962 -208 32 0 0 0 chr12 11817824 11817856 -131968599 + AT_rich Low_complexity Low_complexity 1 32 0 216 67 0 0 chr12 11819823 11819853 -131966602 + (TG)n Simple_repeat Simple_repeat 1 30 0 315 308 45 38 chr12 11820953 11821086 -131965369 + L2 LINE L2 3180 3313 0 1376 334 56 46 chr12 11822308 11822818 -131963637 - HERVL LTR ERVL -2442 3212 2709 1574 194 0 0 chr12 11822818 11823102 -131963353 - AluJb SINE Alu -26 286 3 1376 334 56 46 chr12 11823102 11823661 -131962794 - HERVL LTR ERVL -2945 2709 2132 1603 184 31 3 chr12 11823758 11824046 -131962409 + AluJo SINE Alu 1 296 -16 312 233 116 79 chr12 11824162 11824212 -131962243 - MIR SINE MIR -62 200 153 1952 136 3 3 chr12 11824212 11824507 -131961948 - AluSx SINE Alu -14 298 4 312 233 116 79 chr12 11824507 11824645 -131961810 - MIR SINE MIR -109 153 5 2506 48 0 16 chr12 11824843 11825158 -131961297 - AluY SINE Alu -1 310 1 198 118 0 0 chr12 11825343 11825377 -131961078 + (TG)n Simple_repeat Simple_repeat 2 35 0 473 227 27 17 chr12 11826385 11826542 -131959913 + L1ME3A LINE L1 5678 5832 -338 26 30 0 0 chr12 11827069 11827102 -131959353 + AT_rich Low_complexity Low_complexity 1 33 0 2088 126 0 0 chr12 11827846 11828139 -131958316 + AluSq SINE Alu 2 294 -19 274 243 134 50 chr12 11829138 11829377 -131957078 + L1MEd LINE L1 917 1175 -4944 781 277 81 6 chr12 11829608 11829940 -131956515 + L1ME3 LINE L1 5600 5956 -214 240 288 25 12 chr12 11830047 11830127 -131956328 + L1ME3 LINE L1 6001 6081 -81 219 271 0 0 chr12 11830873 11830921 -131955534 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 1545 255 51 16 chr12 11832239 11832690 -131953765 + L1ME LINE L1 6 472 -5598 14518 178 13 19 chr12 11833415 11833964 -131952491 - L1MA2 LINE L1 0 7723 7173 2339 75 0 7 chr12 11833964 11834271 -131952184 - AluSc SINE Alu -4 305 1 14518 178 13 19 chr12 11834271 11836536 -131949919 - L1MA2 LINE L1 -550 7173 4928 233 29 0 29 chr12 11836536 11836571 -131949884 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 14518 178 13 19 chr12 11836571 11838321 -131948134 - L1MA2 LINE L1 -2795 4928 3170 6238 122 30 60 chr12 11838321 11844614 -131941841 - L1PA7 LINE L1 -3 6151 12 2653 122 23 54 chr12 11844641 11845157 -131941298 - L1MA2 LINE L1 -4402 3163 2664 952 246 29 20 chr12 11845166 11845508 -131940947 - L1M4 LINE L1 -1226 4920 4576 1286 207 41 4 chr12 11845689 11845960 -131940495 + AluJo SINE Alu 1 281 -31 332 331 63 17 chr12 11846110 11846285 -131940170 - MIR SINE MIR -79 183 1 1858 137 3 42 chr12 11846751 11847064 -131939391 + AluSx SINE Alu 1 301 -11 25 31 0 0 chr12 11847487 11847519 -131938936 + AT_rich Low_complexity Low_complexity 1 32 0 183 42 0 0 chr12 11849246 11849270 -131937185 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 11850225 11850249 -131936206 + AT_rich Low_complexity Low_complexity 1 24 0 602 304 25 28 chr12 11850489 11850775 -131935680 - L1ME3 LINE L1 -204 5958 5674 263 307 18 18 chr12 11851089 11851252 -131935203 - L1MEc LINE L1 -4811 1499 1337 382 295 86 30 chr12 11851352 11851586 -131934869 - L1MEc LINE L1 -4949 1170 924 22 0 0 0 chr12 11852605 11852627 -131933828 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 11853846 11853882 -131932573 + AT_rich Low_complexity Low_complexity 1 36 0 34 96 0 0 chr12 11854265 11854369 -131932086 + AT_rich Low_complexity Low_complexity 1 104 0 287 216 64 32 chr12 11854578 11854592 -131931863 - L1M4 LINE L1 -333 5845 5832 465 255 67 18 chr12 11854592 11854902 -131931553 - L1ME3A LINE L1 -338 5832 5470 24 0 0 0 chr12 11854903 11854927 -131931528 + AT_rich Low_complexity Low_complexity 1 24 0 1693 148 10 36 chr12 11854930 11855234 -131931221 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr12 11855579 11855603 -131930852 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr12 11856548 11856583 -131929872 + AT_rich Low_complexity Low_complexity 1 35 0 223 308 105 47 chr12 11856775 11856947 -131929508 + MIR SINE MIR 2 183 -79 1074 163 10 39 chr12 11857085 11857288 -131929167 - AluJo SINE Alu -4 308 112 21 57 0 0 chr12 11858052 11858087 -131928368 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr12 11858211 11858245 -131928210 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr12 11859027 11859052 -131927403 + AT_rich Low_complexity Low_complexity 1 25 0 638 288 97 7 chr12 11859304 11859613 -131926842 - L1ME3 LINE L1 -206 6025 5689 443 324 108 47 chr12 11859837 11860217 -131926238 - L1ME3 LINE L1 -4723 1673 1271 266 280 51 0 chr12 11861329 11861425 -131925030 - L1M4 LINE L1 -599 5571 5469 1369 334 70 45 chr12 11863252 11863824 -131922631 - HERVL LTR ERVL -2366 3288 2732 1503 189 48 0 chr12 11863824 11864094 -131922361 - AluJb SINE Alu -27 285 3 1369 334 70 45 chr12 11864094 11864760 -131921695 - HERVL LTR ERVL -2922 2732 2019 1616 192 31 0 chr12 11864767 11865059 -131921396 + AluJo SINE Alu 1 301 -11 1687 175 3 3 chr12 11865226 11865517 -131920938 - AluSx SINE Alu -9 303 13 304 293 48 54 chr12 11865517 11865664 -131920791 - MIR SINE MIR -112 150 5 212 147 0 0 chr12 11866029 11866063 -131920392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1068 50 47 285 chr12 11866972 11867270 -131919185 + AluY SINE Alu 80 306 -5 1912 148 3 0 chr12 11867947 11868230 -131918225 + AluSq SINE Alu 1 284 -29 183 80 0 0 chr12 11868359 11868384 -131918071 + (CAT)n Simple_repeat Simple_repeat 1 25 0 253 215 136 63 chr12 11869286 11869477 -131916978 + L1MEd LINE L1 944 1148 -4971 556 298 76 9 chr12 11870055 11870371 -131916084 + L1ME3 LINE L1 5620 5956 -206 22 0 0 0 chr12 11870622 11870644 -131915811 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 11871417 11871443 -131915012 + AT_rich Low_complexity Low_complexity 1 26 0 3238 128 14 8 chr12 11871481 11871989 -131914466 + MER9 LTR ERVK 1 511 0 306 0 0 0 chr12 11873872 11873906 -131912549 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr12 11874253 11874274 -131912181 + AT_rich Low_complexity Low_complexity 1 21 0 14178 184 11 24 chr12 11875251 11877462 -131908993 - L1MA2 LINE L1 -477 7246 5097 2452 78 0 0 chr12 11877462 11877770 -131908685 + AluY SINE Alu 1 308 -3 14178 184 11 24 chr12 11877770 11879672 -131906783 - L1MA2 LINE L1 -2626 5097 3173 2540 62 15 0 chr12 11879672 11879997 -131906458 - L1PA7 LINE L1 -4 6150 5821 310 223 62 69 chr12 11880001 11880131 -131906324 - MIR SINE MIR -126 136 8 189 178 0 0 chr12 11880544 11880589 -131905866 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1575 216 0 7 chr12 11881738 11882039 -131904416 - AluJb SINE Alu -13 299 1 22 0 0 0 chr12 11882243 11882265 -131904190 + AT_rich Low_complexity Low_complexity 1 22 0 2235 65 7 0 chr12 11883607 11883909 -131902546 + AluY SINE Alu 4 307 0 379 270 162 27 chr12 11884345 11884790 -131901665 + L1MEd LINE L1 934 1468 -4842 27 73 0 0 chr12 11884839 11884894 -131901561 + AT_rich Low_complexity Low_complexity 1 55 0 1134 208 114 0 chr12 11884910 11885155 -131901300 - AluJo SINE Alu -39 273 1 605 301 95 0 chr12 11885410 11885716 -131900739 + L1ME3A LINE L1 5628 5962 -208 351 0 0 0 chr12 11886382 11886421 -131900034 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1774 102 0 4 chr12 11886423 11886659 -131899796 - AluSc SINE Alu -32 277 43 27 0 0 0 chr12 11887056 11887083 -131899372 + AT_rich Low_complexity Low_complexity 1 27 0 888 200 33 83 chr12 11887920 11888220 -131898235 + LTR12 LTR ERV1 1 285 -429 244 214 34 22 chr12 11888221 11888310 -131898145 + LTR30 LTR ERV1 553 642 -80 627 151 0 2 chr12 11888313 11888428 -131898027 + LTR12 LTR ERV1 175 714 0 250 307 0 61 chr12 11889843 11889957 -131896498 + G-rich Low_complexity Low_complexity 1 107 0 22 56 0 0 chr12 11891223 11891259 -131895196 + AT_rich Low_complexity Low_complexity 1 36 0 240 35 0 0 chr12 11891460 11891489 -131894966 + (TC)n Simple_repeat Simple_repeat 2 30 0 440 292 43 43 chr12 11894370 11894531 -131891924 + L2 LINE L2 3153 3313 0 308 254 9 140 chr12 11895676 11895790 -131890665 + MER45 DNA AcHobo 1 99 -1482 874 328 82 44 chr12 11895790 11897031 -131889424 - ERVL LTR ERVL -1900 3096 2015 1454 230 10 0 chr12 11897043 11897339 -131889116 + AluJo SINE Alu 11 309 -3 2323 97 3 3 chr12 11897354 11897662 -131888793 + AluSx SINE Alu 1 308 -4 312 356 41 26 chr12 11897694 11897961 -131888494 - ERVL LTR ERVL -3720 2044 1774 681 310 176 3 chr12 11898054 11898383 -131888072 + L2 LINE L2 1814 2199 -1115 203 211 19 0 chr12 11898432 11898484 -131887971 + (TA)n Simple_repeat Simple_repeat 1 53 0 234 182 80 68 chr12 11898799 11898887 -131887568 - L1M4 LINE L1 -1116 5030 4942 2125 309 78 9 chr12 11898890 11899657 -131886798 + L2 LINE L2 2157 2976 -338 15037 220 25 10 chr12 11899728 11899759 -131886696 - L1P4 LINE L1 -574 6243 6214 1735 158 0 0 chr12 11899759 11900038 -131886417 - L1PA15 LINE L1 -5 6160 5882 15037 220 25 10 chr12 11900038 11900096 -131886359 - L1P4 LINE L1 -603 6214 6158 279 0 0 0 chr12 11900096 11900127 -131886328 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 15037 220 25 10 chr12 11900127 11903940 -131882515 - L1P4 LINE L1 -659 6158 2306 3895 225 7 11 chr12 11903980 11904811 -131881644 - L1P4 LINE L1 -4764 2023 1196 776 271 50 21 chr12 11904802 11905182 -131881273 - L1M4 LINE L1 -1180 4966 4576 * 215 294 61 75 chr12 11905436 11905664 -131880791 - MIR SINE MIR -32 230 6 23 33 0 0 chr12 11905739 11905769 -131880686 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr12 11905852 11905885 -131880570 + AT_rich Low_complexity Low_complexity 1 33 0 31 76 0 0 chr12 11907206 11907272 -131879183 + AT_rich Low_complexity Low_complexity 1 66 0 467 257 106 32 chr12 11907314 11907610 -131878845 + L1ME3A LINE L1 5512 5845 -333 2231 100 3 7 chr12 11908162 11908472 -131877983 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 11908478 11908502 -131877953 + AT_rich Low_complexity Low_complexity 1 24 0 2006 131 0 7 chr12 11908928 11909231 -131877224 + AluSx SINE Alu 3 303 0 1849 226 60 93 chr12 11909531 11910345 -131876110 + LTR1B LTR ERV1 1 787 -39 1214 118 21 0 chr12 11910920 11911106 -131875349 - AluSg/x SINE Alu -3 309 120 261 0 0 0 chr12 11911374 11911403 -131875052 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 11911673 11911703 -131874752 + AT_rich Low_complexity Low_complexity 1 30 0 2498 61 0 6 chr12 11911881 11912194 -131874261 - AluY SINE Alu 0 311 1 192 158 0 0 chr12 11912991 11913029 -131873426 + (TG)n Simple_repeat Simple_repeat 2 39 0 276 296 45 85 chr12 11915875 11915958 -131870497 + L2 LINE L2 3145 3219 -94 2378 66 0 3 chr12 11915958 11916262 -131870193 + AluY SINE Alu 1 303 -8 276 296 45 85 chr12 11916262 11916354 -131870101 + L2 LINE L2 3219 3313 0 24 0 0 0 chr12 11916786 11916810 -131869645 + AT_rich Low_complexity Low_complexity 1 24 0 264 333 14 0 chr12 11917532 11917604 -131868851 + MER45 DNA AcHobo 1 73 -967 232 320 62 0 chr12 11917658 11917755 -131868700 + L2 LINE L2 2009 2111 -1203 1151 314 76 42 chr12 11917771 11918707 -131867748 - HERVL LTR ERVL -2353 3301 2334 729 312 173 3 chr12 11918890 11919220 -131867235 + L2 LINE L2 1814 2199 -1115 230 169 0 84 chr12 11919493 11919564 -131866891 - L1M4 LINE L1 -1140 5006 4942 2270 296 65 10 chr12 11919565 11920424 -131866031 + L2 LINE L2 2156 3068 -245 15359 221 29 14 chr12 11920452 11924251 -131862204 - L1PA15 LINE L1 0 6816 2884 1615 196 0 29 chr12 11924251 11924567 -131861888 + AluJb SINE Alu 1 307 -5 15359 221 29 14 chr12 11924567 11926283 -131860172 - L1PA15 LINE L1 -3932 2884 1196 736 259 45 37 chr12 11926274 11926653 -131859802 - L1M4 LINE L1 -1180 4966 4585 * 302 326 76 12 chr12 11926956 11927128 -131859327 - MIR SINE MIR -79 183 1 22 0 0 0 chr12 11928467 11928489 -131857966 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr12 11928574 11928625 -131857830 + AT_rich Low_complexity Low_complexity 1 51 0 423 274 34 15 chr12 11928801 11928950 -131857505 + L1ME1 LINE L1 5679 5837 -333 27 62 0 0 chr12 11929353 11929401 -131857054 + AT_rich Low_complexity Low_complexity 1 48 0 16798 191 33 10 chr12 11929580 11932659 -131853796 + L1P4 LINE L1 1690 4934 -2665 7299 101 7 18 chr12 11932659 11933742 -131852713 + MER11C LTR ERVK 1 1071 0 16798 191 33 10 chr12 11933742 11935783 -131850672 + L1P4 LINE L1 4934 6926 -673 1697 268 46 2 chr12 11935797 11936323 -131850132 + L1PBa LINE L1 6 554 -6309 2166 208 121 8 chr12 11936333 11936839 -131849616 + L1PBa LINE L1 595 1157 -5706 3209 181 7 3 chr12 11936868 11937452 -131849003 + L1PBa LINE L1 1339 1924 -4939 43 0 0 0 chr12 11937452 11937495 -131848960 + AT_rich Low_complexity Low_complexity 1 43 0 1117 184 0 93 chr12 11939015 11939347 -131847108 - L1MA7 LINE L1 0 6291 5991 373 305 84 57 chr12 11941292 11941695 -131844760 - L1M4 LINE L1 -1890 4256 3843 269 237 17 0 chr12 11941696 11941755 -131844700 + HsTC2 DNA Tc2 1839 1898 0 189 107 0 0 chr12 11941767 11941795 -131844660 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 261 0 0 0 chr12 11941794 11941823 -131844632 + (GA)n Simple_repeat Simple_repeat 2 30 0 747 205 80 35 chr12 11942144 11942344 -131844111 + MLT1B LTR MaLR 1 209 -181 625 220 7 110 chr12 11942345 11942627 -131843828 + L1ME1 LINE L1 5905 6157 -9 29 47 0 0 chr12 11943648 11943691 -131842764 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 11944547 11944570 -131841885 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 11945015 11945036 -131841419 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 11945357 11945384 -131841071 + AT_rich Low_complexity Low_complexity 1 27 0 329 306 8 0 chr12 11947085 11947206 -131839249 + L1MC/D LINE L1 5699 5820 -1988 243 180 0 20 chr12 11952137 11952187 -131834268 - MLT1B LTR MaLR -318 72 24 522 319 43 33 chr12 11952258 11952559 -131833896 + L2 LINE L2 2481 2784 -530 197 279 48 58 chr12 11953035 11953139 -131833316 - MIR SINE MIR -46 216 114 1045 156 11 6 chr12 11953784 11953963 -131832492 - MER61E LTR ERV1 -51 518 339 3861 73 0 2 chr12 11953969 11954503 -131831952 + L1P LINE L1 3096 3628 -2518 397 200 149 70 chr12 11954506 11954721 -131831734 + MLT1B LTR MaLR 330 561 -6 2484 44 27 0 chr12 11954741 11955037 -131831418 + AluY SINE Alu 1 304 -7 228 250 140 0 chr12 11955193 11955293 -131831162 + L1M4 LINE L1 2173 2286 -3860 2203 107 0 10 chr12 11955599 11955899 -131830556 + AluSq SINE Alu 1 297 -16 2823 13 0 0 chr12 11955900 11956209 -131830246 + AluYb8 SINE Alu 1 309 -9 339 289 109 39 chr12 11956217 11956501 -131829954 + L1M4 LINE L1 2428 2731 -3415 289 333 60 55 chr12 11956831 11956962 -131829493 - MIR SINE MIR -6 256 122 1683 172 3 17 chr12 11956962 11957264 -131829191 + AluJb SINE Alu 5 302 -10 289 333 60 55 chr12 11957264 11957333 -131829122 - MIR SINE MIR -140 122 55 534 330 158 35 chr12 11957365 11957382 -131829073 + L1M4 LINE L1 3141 3155 -2991 228 67 0 0 chr12 11957382 11957412 -131829043 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 534 330 158 35 chr12 11957412 11958493 -131827962 + L1M4 LINE L1 3155 4375 -1771 254 292 45 26 chr12 11958657 11958811 -131827644 + L1M4 LINE L1 4564 4720 -1426 1322 210 39 7 chr12 11958845 11959131 -131827324 + AluJb SINE Alu 12 306 -6 27 73 0 0 chr12 11960147 11960202 -131826253 + AT_rich Low_complexity Low_complexity 1 55 0 913 165 30 198 chr12 11960542 11960646 -131825809 - MSTB2 LTR MaLR 0 432 312 2465 96 14 6 chr12 11960646 11961002 -131825453 - L1PA10 LINE L1 -12 6156 5798 913 165 30 198 chr12 11961002 11961250 -131825205 - MSTB2 LTR MaLR -120 312 160 21 0 0 0 chr12 11961669 11961690 -131824765 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 11961720 11961744 -131824711 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 13 chr12 11961883 11961960 -131824495 + (TA)n Simple_repeat Simple_repeat 2 77 0 1340 203 78 0 chr12 11961960 11962098 -131824357 - AluJb SINE Alu -36 276 150 362 21 21 0 chr12 11962098 11962145 -131824310 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 1340 203 78 0 chr12 11962145 11962262 -131824193 - AluJb SINE Alu -162 150 1 2432 122 5 19 chr12 11962690 11963059 -131823396 + THE1B LTR MaLR 1 364 0 618 264 108 31 chr12 11963077 11963384 -131823071 - MER93b LTR ERV1 0 373 63 183 62 31 0 chr12 11963869 11963901 -131822554 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 2217 89 0 0 chr12 11963901 11964181 -131822274 - AluY SINE Alu -1 311 1 2340 172 23 9 chr12 11964319 11964754 -131821701 + MER65A LTR ERV1 5 445 0 287 348 101 19 chr12 11965044 11965360 -131821095 - MLT1I LTR MaLR -7 402 61 773 303 36 24 chr12 11965427 11965561 -131820894 + L1ME3A LINE L1 2219 2350 -3796 2118 86 0 7 chr12 11965561 11965841 -131820614 - AluY SINE Alu -18 293 16 773 303 36 24 chr12 11965841 11966211 -131820244 + L1ME3A LINE L1 2350 2729 -3417 344 252 82 13 chr12 11966234 11966393 -131820062 + L1ME3A LINE L1 2839 3008 -3138 584 274 51 34 chr12 11966743 11967039 -131819416 + L1ME3A LINE L1 5655 5955 -215 389 265 35 30 chr12 11967288 11967488 -131818967 + L1 LINE L1 3598 3798 -2348 21 0 0 0 chr12 11967622 11967643 -131818812 + AT_rich Low_complexity Low_complexity 1 21 0 1135 221 88 17 chr12 11967908 11968316 -131818139 - Zaphod DNA AcHobo -26 4005 3569 1618 122 47 111 chr12 11968409 11968557 -131817898 + MER44D DNA MER2_type 1 157 -2334 788 169 0 0 chr12 11968557 11968687 -131817768 - FLAM_C SINE Alu -2 131 2 1618 122 47 111 chr12 11968687 11968900 -131817555 + MER44D DNA MER2_type 157 609 0 2488 218 48 66 chr12 11971237 11971495 -131814960 - L1MB7 LINE L1 -1 6183 5922 186 43 0 0 chr12 11971495 11971518 -131814937 + (CA)n Simple_repeat Simple_repeat 2 24 0 2488 218 48 66 chr12 11971518 11972174 -131814281 - L1MB7 LINE L1 -262 5922 5270 2126 130 39 30 chr12 11972174 11972535 -131813920 - THE1B LTR MaLR 0 364 1 2488 218 48 66 chr12 11972535 11972680 -131813775 - L1MB7 LINE L1 -914 5270 5124 482 256 36 70 chr12 11973120 11973171 -131813284 - L1ME2 LINE L1 -176 5988 5938 6138 189 18 59 chr12 11973171 11973349 -131813106 - L1PB3 LINE L1 -218 6639 6455 2134 126 3 0 chr12 11973349 11973643 -131812812 - AluSx SINE Alu -17 295 1 6138 189 18 59 chr12 11973643 11973775 -131812680 - L1PB3 LINE L1 -402 6455 6319 236 132 0 0 chr12 11973775 11973813 -131812642 + Alu SINE Alu 257 294 -7 6138 189 18 59 chr12 11973813 11975539 -131810916 - L1PB3 LINE L1 -538 6319 4654 12922 177 21 14 chr12 11975546 11978997 -131807458 - L1PB3 LINE L1 -3537 3312 71 270 280 120 10 chr12 11979001 11979201 -131807254 - L1M4 LINE L1 -2543 3603 3382 22 0 0 0 chr12 11979210 11979232 -131807223 + AT_rich Low_complexity Low_complexity 1 22 0 2321 177 24 31 chr12 11979240 11979698 -131806757 - MSTB2 LTR MaLR -2 455 1 1819 188 5 21 chr12 11979698 11980071 -131806384 - MSTB2-int LTR MaLR 0 1651 1285 978 290 57 44 chr12 11980080 11980539 -131805916 + L2 LINE L2 2828 3292 -21 822 262 5 42 chr12 11981056 11981126 -131805329 - MLT1G LTR MaLR -11 579 508 2016 158 96 20 chr12 11981126 11981524 -131804931 + MSTA LTR MaLR 1 428 0 822 262 5 42 chr12 11981524 11981667 -131804788 - MLT1G LTR MaLR -82 508 374 721 207 45 39 chr12 11981701 11981880 -131804575 + MER3 DNA MER1_type 25 204 -5 243 175 0 0 chr12 11981849 11981889 -131804566 - MER3 DNA MER1_type -126 83 44 * 1162 288 78 6 chr12 11981893 11982237 -131804218 - MLT1G LTR MaLR -217 373 5 2467 71 3 0 chr12 11982251 11982548 -131803907 - AluSx SINE Alu -14 298 1 490 167 88 10 chr12 11985457 11985559 -131800896 + MER20 DNA MER1_type 1 110 -109 322 135 10 104 chr12 11985563 11985659 -131800796 + MER53 DNA DNA 3 89 -100 325 175 0 16 chr12 11985762 11985825 -131800630 + MER53 DNA DNA 126 187 -2 504 206 21 0 chr12 11985830 11985927 -131800528 + MER20 DNA MER1_type 115 213 -6 232 318 0 0 chr12 11986941 11987004 -131799451 - MER96 DNA MER1_type? -112 63 1 * 275 216 135 0 chr12 11987004 11987075 -131799380 + LTR40a LTR ERVL 106 186 -333 265 303 170 41 chr12 11987183 11987401 -131799054 + LTR40a LTR ERVL 237 482 -37 588 339 64 24 chr12 11987766 11988064 -131798391 + HERVL40 LTR ERVL 1057 1366 -4164 234 128 0 0 chr12 11988194 11988233 -131798222 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 1007 209 0 15 chr12 11988238 11988434 -131798021 - AluJo SINE Alu -117 195 3 282 29 0 0 chr12 11988608 11988643 -131797812 + (CA)n Simple_repeat Simple_repeat 1 35 0 334 289 109 19 chr12 11988655 11988811 -131797644 + HERVL40 LTR ERVL 1448 1617 -3913 2267 263 66 29 chr12 11988931 11989997 -131796458 + L1ME LINE L1 613 1680 -4400 530 204 35 9 chr12 11990055 11990168 -131796287 + MLT1D LTR MaLR 334 449 -56 938 215 74 3 chr12 11990179 11990463 -131795992 + L1ME LINE L1 1791 2094 -3986 931 252 139 25 chr12 11990679 11991032 -131795423 + MLT1D LTR MaLR 12 404 -101 1231 116 0 6 chr12 11991333 11991506 -131794949 + AluSg/x SINE Alu 129 300 -12 520 327 50 29 chr12 11991944 11992225 -131794230 - L2 LINE L2 -530 2784 2498 196 301 82 82 chr12 11996881 11997027 -131789428 + MER5A DNA MER1_type 43 188 -1 413 238 36 87 chr12 11997416 11997693 -131788762 - L1ME4a LINE L1 -171 5950 5688 252 296 102 58 chr12 11998552 11998758 -131787697 + MIR SINE MIR 22 236 -26 193 206 15 15 chr12 11999030 11999098 -131787357 + CT-rich Low_complexity Low_complexity 3 70 0 2175 97 0 0 chr12 11999134 11999454 -131787001 - AluSg SINE Alu 0 322 3 3181 206 35 44 chr12 11999477 12000383 -131786072 - L1PB4 LINE L1 -4 6854 5957 281 313 0 0 chr12 12000715 12000811 -131785644 + Zaphod DNA AcHobo 3935 4030 -1 280 213 100 12 chr12 12000812 12000892 -131785563 - HAL1 LINE L1 -1149 1358 1272 4971 207 35 4 chr12 12001748 12002832 -131783623 + HSMAR2 DNA Mariner 6 1123 -179 341 371 70 18 chr12 12003030 12003302 -131783153 + HERVL40 LTR ERVL 1035 1320 -4210 1220 246 10 13 chr12 12003537 12003838 -131782617 - AluJb SINE Alu -2 300 1 319 266 13 0 chr12 12004183 12004262 -131782193 + HERVL40 LTR ERVL 2050 2129 -3401 1555 261 65 33 chr12 12004502 12005286 -131781169 + L1MDa LINE L1 1261 2069 -4471 201 125 0 50 chr12 12005295 12005335 -131781120 + (CAA)n Simple_repeat Simple_repeat 2 39 0 595 183 180 34 chr12 12005386 12005577 -131780878 + MLT1D LTR MaLR 244 447 -58 890 213 117 35 chr12 12005579 12005954 -131780501 + L1MDa LINE L1 2149 2554 -3986 215 396 43 0 chr12 12006033 12006172 -131780283 - MIR SINE MIR -51 211 67 3807 210 37 50 chr12 12006173 12006380 -131780075 - L1PB4 LINE L1 -1709 5139 4931 1294 101 5 0 chr12 12006380 12006568 -131779887 - L1PA13 LINE L1 -4 6159 5971 3807 210 37 50 chr12 12006568 12007550 -131778905 - L1PB4 LINE L1 -1917 4931 3966 230 194 19 87 chr12 12007563 12007666 -131778789 + L1MC4 LINE L1 6608 6703 -1339 7036 242 39 21 chr12 12007672 12009406 -131777049 - L1PB4 LINE L1 -2897 3951 2138 313 0 0 0 chr12 12009406 12009446 -131777009 - L1PA3 LINE L1 -3 6152 6113 7036 242 39 21 chr12 12009446 12010661 -131775794 - L1PB4 LINE L1 -4710 2138 946 4353 235 41 25 chr12 12010780 12011879 -131774576 + L1M3f LINE L1 8 1123 -4205 326 247 0 0 chr12 12012175 12012252 -131774203 + MER115 DNA AcHobo 605 681 -12 739 250 152 44 chr12 12012264 12012837 -131773618 - HAL1 LINE L1 -1149 1358 724 375 217 83 50 chr12 12013317 12013437 -131773018 + MLT1E2 LTR MaLR 16 139 -487 5094 188 54 27 chr12 12013562 12016513 -131769942 - L1MA4A LINE L1 -11 7354 2720 1993 211 95 4 chr12 12016515 12017041 -131769414 - L1M2 LINE L1 -3962 3247 2674 270 245 21 21 chr12 12017055 12017149 -131769306 - L1 LINE L1 -1011 6554 6461 1972 144 6 5 chr12 12017161 12017508 -131768947 - LTR25 LTR ERV1 -3 782 378 8532 181 23 13 chr12 12017510 12018146 -131768309 - L1 LINE L1 -1353 6212 5584 753 98 0 0 chr12 12018146 12018258 -131768197 + (TCCCC)n Simple_repeat Simple_repeat 2 113 0 8532 181 23 13 chr12 12018258 12019414 -131767041 - L1 LINE L1 -1981 5584 4402 8508 196 12 12 chr12 12019427 12020967 -131765488 - L1 LINE L1 -6007 1558 19 3642 166 20 1 chr12 12020979 12021709 -131764746 - L1M2 LINE L1 -4523 2686 1943 2258 166 43 17 chr12 12021709 12022126 -131764329 - MSTA LTR MaLR 0 428 1 9175 177 26 5 chr12 12022127 12023743 -131762712 - MSTA-int LTR MaLR -1 1637 1 2415 164 37 0 chr12 12023743 12024152 -131762303 - MSTA LTR MaLR 0 428 5 4209 264 113 13 chr12 12024154 12025451 -131761004 - L1M2 LINE L1 -5272 1937 512 952 312 91 74 chr12 12025473 12026461 -131759994 - L1MA4A LINE L1 -6151 1058 1 730 262 83 59 chr12 12026461 12026773 -131759682 - L2 LINE L2 -598 2716 2392 1624 175 22 64 chr12 12026773 12027178 -131759277 + MLT1B LTR MaLR 1 388 -2 730 262 83 59 chr12 12027178 12027239 -131759216 - L2 LINE L2 -922 2392 2334 24 0 0 0 chr12 12029655 12029679 -131756776 + AT_rich Low_complexity Low_complexity 1 24 0 310 276 57 88 chr12 12029743 12030040 -131756415 - L2 LINE L2 -436 2878 2591 22 0 0 0 chr12 12031296 12031318 -131755137 + AT_rich Low_complexity Low_complexity 1 22 0 331 328 15 23 chr12 12032028 12032159 -131754296 - MER5A DNA MER1_type -6 183 54 216 323 40 57 chr12 12032053 12032177 -131754278 + MER5A DNA MER1_type 43 164 -25 * 289 254 24 56 chr12 12032769 12032895 -131753560 - L1MC/D LINE L1 -1988 5820 5699 783 149 26 32 chr12 12034133 12034287 -131752168 + MLT1A1-int LTR MaLR 1583 1735 0 738 236 80 125 chr12 12034287 12034702 -131751753 + MLT1A1 LTR MaLR 1 396 0 21 71 0 0 chr12 12034728 12034770 -131751685 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr12 12034870 12034901 -131751554 + AT_rich Low_complexity Low_complexity 1 31 0 4938 248 107 35 chr12 12035339 12036715 -131749740 + L1MDa LINE L1 19 1717 -4823 1327 199 23 84 chr12 12036715 12037108 -131749347 - MLT1A2 LTR MaLR -2 372 4 4938 248 107 35 chr12 12037108 12038016 -131748439 + L1MDa LINE L1 1717 2558 -3982 22 99 0 0 chr12 12038096 12038167 -131748288 + AT_rich Low_complexity Low_complexity 1 71 0 2260 150 58 27 chr12 12038276 12038399 -131748056 + MSTB LTR MaLR 1 119 -307 1225 146 75 0 chr12 12038399 12038612 -131747843 - MER30 DNA MER1_type -1 229 1 2260 150 58 27 chr12 12038612 12038860 -131747595 + MSTB LTR MaLR 119 389 -37 2300 91 0 3 chr12 12038860 12039167 -131747288 - AluSc SINE Alu -3 306 1 2260 150 58 27 chr12 12039167 12039207 -131747248 + MSTB LTR MaLR 389 426 0 198 247 56 45 chr12 12039280 12039369 -131747086 + L2 LINE L2 2122 2211 -1103 555 248 89 9 chr12 12039435 12039649 -131746806 - L1MDa LINE L1 -4407 2133 1903 201 74 0 0 chr12 12039810 12039837 -131746618 + (A)n Simple_repeat Simple_repeat 1 27 0 920 10 0 0 chr12 12040129 12040232 -131746223 + L1PA5 LINE L1 6044 6146 -8 243 246 0 0 chr12 12040310 12040367 -131746088 + L1M4 LINE L1 4892 4948 -1198 1972 173 23 45 chr12 12040798 12041283 -131745172 - L1MB8 LINE L1 -10 6168 5695 189 0 0 0 chr12 12041397 12041418 -131745037 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1154 118 70 0 chr12 12041423 12041610 -131744845 - L1PA11 LINE L1 -3 6171 5972 1971 286 19 6 chr12 12041610 12042141 -131744314 - MLT1G LTR MaLR -52 538 1 2545 154 20 18 chr12 12042382 12042836 -131743619 + MER67C LTR ERV1 256 710 0 593 328 59 11 chr12 12042880 12043167 -131743288 + LTR16B LTR ERVL 113 413 -51 22 70 0 0 chr12 12044317 12044360 -131742095 + AT_rich Low_complexity Low_complexity 1 43 0 5706 151 27 6 chr12 12044458 12045555 -131740900 + L1MA5 LINE L1 5182 6298 -2 215 226 0 21 chr12 12045646 12045739 -131740716 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 1176 173 0 28 chr12 12045868 12046082 -131740373 - AluJo SINE Alu -77 235 28 184 245 57 0 chr12 12046088 12046141 -131740314 - L2 LINE L2 -936 2378 2323 191 77 0 51 chr12 12046573 12046612 -131739843 + (TTTTTA)n Simple_repeat Simple_repeat 4 40 0 1484 17 6 11 chr12 12046614 12046793 -131739662 - L1PA2 LINE L1 -7 6148 5971 23 33 0 0 chr12 12047540 12047570 -131738885 + AT_rich Low_complexity Low_complexity 1 30 0 2268 68 7 0 chr12 12048080 12048431 -131738024 + AluY SINE Alu 1 353 0 416 149 0 0 chr12 12048664 12048738 -131737717 - AluS SINE Alu -4 305 232 597 206 99 22 chr12 12048855 12049014 -131737441 - MLT1A1 LTR MaLR -226 139 1 1003 244 44 17 chr12 12049037 12049543 -131736912 - L1MEc LINE L1 -3625 2590 2115 299 238 133 0 chr12 12049557 12049662 -131736793 - L1 LINE L1 -2339 3807 3689 405 70 28 14 chr12 12049744 12049815 -131736640 + (TA)n Simple_repeat Simple_repeat 1 72 0 315 49 0 0 chr12 12049814 12049855 -131736600 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 1721 140 3 46 chr12 12049858 12050143 -131736312 - AluJo SINE Alu -37 275 3 1192 260 133 26 chr12 12050221 12050427 -131736028 - L1 LINE L1 -2984 3162 2979 1368 140 21 49 chr12 12050427 12050670 -131735785 + MER46A DNA MER2_type 1 236 0 1192 260 133 26 chr12 12050670 12051390 -131735065 - L1 LINE L1 -3167 2979 2137 276 271 75 53 chr12 12051717 12051850 -131734605 + MIR SINE MIR 119 254 -8 367 365 13 19 chr12 12051891 12052047 -131734408 + L2 LINE L2 3159 3313 0 24 0 0 0 chr12 12052218 12052242 -131734213 + AT_rich Low_complexity Low_complexity 1 24 0 219 188 0 0 chr12 12054507 12054555 -131731900 + (CA)n Simple_repeat Simple_repeat 1 48 0 283 288 27 14 chr12 12054926 12055072 -131731383 - L1ME LINE L1 -264 5840 5693 241 346 116 46 chr12 12055135 12055462 -131730993 - L2 LINE L2 -48 3224 2875 315 299 78 13 chr12 12055667 12055821 -131730634 - L1ME LINE L1 -2381 5410 5247 504 283 78 91 chr12 12056433 12057006 -131729449 - L1ME LINE L1 -5317 802 237 2522 128 70 26 chr12 12057007 12057507 -131728948 + L1MA5A LINE L1 5759 6280 -17 415 138 161 11 chr12 12057761 12057848 -131728607 + LTR47A LTR ERVL 261 360 -92 326 119 48 0 chr12 12057868 12057952 -131728503 + (TA)n Simple_repeat Simple_repeat 1 88 0 1872 142 9 9 chr12 12057960 12058283 -131728172 + L1PB3 LINE L1 5830 6152 -2 646 160 9 0 chr12 12058298 12058404 -131728051 + LTR47A LTR ERVL 346 452 0 25 51 0 0 chr12 12058706 12058745 -131727710 + AT_rich Low_complexity Low_complexity 1 39 0 1609 141 20 37 chr12 12058745 12059044 -131727411 - L1PA16 LINE L1 -9 6157 5864 227 309 141 13 chr12 12059094 12059392 -131727063 - L1M4 LINE L1 -3103 3043 2708 195 100 0 0 chr12 12059712 12059742 -131726713 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 635 128 32 24 chr12 12059742 12059867 -131726588 - L1MA4A LINE L1 -14 6289 6164 4196 206 35 28 chr12 12060265 12061666 -131724789 - L1MB4 LINE L1 -2 6178 4747 265 114 0 0 chr12 12061666 12061701 -131724754 - U2 snRNA snRNA -153 35 1 4196 206 35 28 chr12 12061701 12061886 -131724569 - L1MB4 LINE L1 -1433 4747 4565 454 267 37 15 chr12 12062517 12062652 -131723803 - L2 LINE L2 0 3313 3176 270 241 0 17 chr12 12062653 12062711 -131723744 - MLT1K LTR MaLR -346 242 186 627 51 0 0 chr12 12063196 12063275 -131723180 + (TA)n Simple_repeat Simple_repeat 2 80 0 1329 252 42 19 chr12 12063289 12063714 -131722741 - L1 LINE L1 -1422 4724 4290 22 0 0 0 chr12 12063963 12063985 -131722470 + AT_rich Low_complexity Low_complexity 1 22 0 1154 237 41 36 chr12 12064241 12064604 -131721851 - MLT1A1 LTR MaLR 0 365 1 437 324 109 17 chr12 12064740 12064978 -131721477 - MIR SINE MIR 0 262 3 247 89 0 22 chr12 12065245 12065290 -131721165 + L1MA4 LINE L1 6248 6291 -9 373 235 9 160 chr12 12065476 12065573 -131720882 - L2 LINE L2 -2728 586 537 788 196 0 0 chr12 12065573 12065706 -131720749 + FLAM_C SINE Alu 1 133 0 373 235 9 160 chr12 12065706 12065821 -131720634 - L2 LINE L2 -2777 537 406 448 284 95 5 chr12 12065875 12066065 -131720390 + Charlie4a DNA MER1_type 47 253 -255 446 224 89 42 chr12 12066073 12066287 -131720168 + Charlie4a DNA MER1_type 283 506 -2 276 336 82 0 chr12 12066298 12066420 -131720035 - L2 LINE L2 -2967 347 216 526 303 29 62 chr12 12068201 12068475 -131717980 - ERVL LTR ERVL -4328 1436 1172 25 0 0 0 chr12 12070963 12070988 -131715467 + AT_rich Low_complexity Low_complexity 1 25 0 829 127 8 0 chr12 12070988 12071106 -131715349 - AluSg/x SINE Alu -26 284 166 23 0 0 0 chr12 12073827 12073850 -131712605 + AT_rich Low_complexity Low_complexity 1 23 0 1947 123 31 0 chr12 12074661 12074954 -131711501 + AluSp SINE Alu 1 302 -11 607 169 140 0 chr12 12075384 12075520 -131710935 - L1MA10 LINE L1 -2 6332 6178 475 154 44 11 chr12 12075975 12076066 -131710389 - MER53 DNA DNA -95 94 1 204 135 0 0 chr12 12077570 12077607 -131708848 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 383 301 60 20 chr12 12078328 12078527 -131707928 + L1M4 LINE L1 2537 2743 -3403 1733 167 7 0 chr12 12079540 12079822 -131706633 + AluJb SINE Alu 1 284 -28 311 352 117 5 chr12 12081421 12081617 -131704838 + L3 LINE CR1 1141 1358 -219 63 57 0 0 chr12 12081625 12081730 -131704725 + AT_rich Low_complexity Low_complexity 1 105 0 303 296 23 89 chr12 12082652 12082834 -131703621 + MLT1J LTR MaLR 247 527 -88 292 176 0 135 chr12 12083121 12083231 -131703224 - AluJ/FRAM SINE Alu 0 318 219 * 727 184 22 7 chr12 12083216 12083352 -131703103 + MLT1A1 LTR MaLR 5 142 -223 184 346 70 77 chr12 12083390 12083662 -131702793 - L2 LINE L2 -195 3077 2808 271 340 46 31 chr12 12084122 12084316 -131702139 - L2 LINE L2 -1025 2289 2093 595 287 97 36 chr12 12084598 12084845 -131701610 + MIR SINE MIR 1 262 0 5109 134 23 58 chr12 12085096 12086051 -131700404 + Tigger3b DNA MER2_type 3 924 -307 2081 122 54 20 chr12 12086081 12086433 -131700022 + THE1C LTR MaLR 12 375 0 1751 152 47 3 chr12 12086433 12086729 -131699726 + Tigger3b DNA MER2_type 923 1231 0 21 0 0 0 chr12 12087140 12087161 -131699294 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 12087286 12087308 -131699147 + AT_rich Low_complexity Low_complexity 1 22 0 408 220 37 142 chr12 12087579 12087874 -131698581 + L1ME3 LINE L1 5677 5940 -230 31 76 0 0 chr12 12089431 12089497 -131696958 + AT_rich Low_complexity Low_complexity 1 66 0 494 257 106 32 chr12 12089539 12089835 -131696620 + L1ME3A LINE L1 5512 5845 -333 2201 100 3 7 chr12 12090387 12090697 -131695758 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 12090703 12090727 -131695728 + AT_rich Low_complexity Low_complexity 1 24 0 2079 130 0 7 chr12 12091153 12091452 -131695003 + AluSx SINE Alu 3 299 -13 26 50 0 0 chr12 12092371 12092411 -131694044 + AT_rich Low_complexity Low_complexity 1 40 0 28 61 0 0 chr12 12092514 12092563 -131693892 + AT_rich Low_complexity Low_complexity 1 49 0 497 254 120 36 chr12 12092580 12092888 -131693567 + L1ME3A LINE L1 5499 5847 -331 216 97 0 0 chr12 12093181 12093212 -131693243 + (T)n Simple_repeat Simple_repeat 1 31 0 292 261 45 0 chr12 12093214 12093302 -131693153 + Charlie7 DNA MER1_type 2170 2261 -351 21 0 0 0 chr12 12093674 12093695 -131692760 + AT_rich Low_complexity Low_complexity 1 21 0 8984 51 3 2 chr12 12093695 12095623 -131690832 - L1PA5 LINE L1 0 6154 4222 1615 183 3 7 chr12 12095892 12096192 -131690263 - AluJo SINE Alu -13 299 1 27 29 0 0 chr12 12096402 12096436 -131690019 + AT_rich Low_complexity Low_complexity 1 34 0 1803 111 0 4 chr12 12097689 12097941 -131688514 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 12098336 12098367 -131688088 + AT_rich Low_complexity Low_complexity 1 31 0 225 278 0 0 chr12 12099203 12099257 -131687198 + LTR30 LTR ERV1 1 54 -668 821 173 74 189 chr12 12099264 12099893 -131686562 + LTR12 LTR ERV1 69 486 -228 207 100 0 0 chr12 12101008 12101038 -131685417 + (TG)n Simple_repeat Simple_repeat 1 30 0 369 308 39 39 chr12 12102126 12102282 -131684173 + L2 LINE L2 3158 3313 0 1736 96 54 8 chr12 12102579 12102840 -131683615 + AluY SINE Alu 34 306 -5 1612 332 46 36 chr12 12103145 12103599 -131682856 - HERVL LTR ERVL -2498 3156 2708 1479 209 3 0 chr12 12103599 12103882 -131682573 - AluJb SINE Alu -26 286 3 1612 332 46 36 chr12 12103882 12104472 -131681983 - HERVL LTR ERVL -2946 2708 2102 1543 184 38 3 chr12 12104549 12104842 -131681613 + AluJo SINE Alu 1 303 -9 1839 163 3 0 chr12 12105018 12105313 -131681142 - AluSx SINE Alu -16 296 1 218 317 55 41 chr12 12105313 12105458 -131680997 - MIR SINE MIR -111 151 5 24 77 0 0 chr12 12106807 12106859 -131679596 + AT_rich Low_complexity Low_complexity 1 52 0 478 300 90 10 chr12 12106996 12107295 -131679160 + L1ME LINE L1 5483 5823 -347 1031 216 38 29 chr12 12107295 12107591 -131678864 - LTR10B LTR ERV1 0 591 226 22 80 0 0 chr12 12107781 12107831 -131678624 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr12 12108241 12108273 -131678182 + AT_rich Low_complexity Low_complexity 1 32 0 1895 149 7 0 chr12 12109021 12109316 -131677139 + AluSq SINE Alu 2 298 -15 183 80 0 0 chr12 12109427 12109452 -131677003 + (CAT)n Simple_repeat Simple_repeat 1 25 0 384 255 147 22 chr12 12110323 12110701 -131675754 + L1ME3 LINE L1 924 1382 -4910 553 248 133 28 chr12 12111103 12111426 -131675029 + L1ME3 LINE L1 5583 5939 -214 246 288 25 12 chr12 12111535 12111615 -131674840 + L1ME3 LINE L1 5984 6064 -81 22 0 0 0 chr12 12112470 12112492 -131673963 + AT_rich Low_complexity Low_complexity 1 22 0 223 260 39 0 chr12 12114418 12114495 -131671960 + (TA)n Simple_repeat Simple_repeat 1 80 0 182 118 29 0 chr12 12115555 12115589 -131670866 + (TA)n Simple_repeat Simple_repeat 2 36 0 545 291 42 18 chr12 12116038 12116203 -131670252 + LTR38-int LTR ERV1 124 292 -1494 816 170 158 35 chr12 12116911 12117170 -131669285 + LTR36 LTR ERV1 3 293 -318 403 256 40 16 chr12 12117267 12117392 -131669063 + LTR36 LTR ERV1 440 567 -44 436 312 0 7 chr12 12117849 12117987 -131668468 - ERVL LTR ERVL -2557 3207 3071 370 330 17 52 chr12 12118055 12118190 -131668265 - ERVL LTR ERVL -2627 3027 2901 1611 169 18 21 chr12 12118190 12118514 -131667941 + AluSx SINE Alu 2 324 0 370 330 17 52 chr12 12118514 12118610 -131667845 - ERVL LTR ERVL -2753 2901 2803 740 319 95 24 chr12 12118845 12119340 -131667115 - ERVL LTR ERVL -2937 2548 2019 807 228 0 86 chr12 12119347 12119579 -131666876 + AluJo SINE Alu 1 212 -100 1289 204 48 130 chr12 12119590 12119815 -131666640 - LTR36 LTR ERV1 -18 593 351 1915 191 89 17 chr12 12119815 12120286 -131666169 - LTR22 LTR ERVK -4 505 1 1289 204 48 130 chr12 12120286 12120706 -131665749 - LTR36 LTR ERV1 -260 351 1 496 172 0 43 chr12 12120706 12120799 -131665656 + AluJo SINE Alu 203 291 -21 367 267 45 34 chr12 12120917 12121093 -131665362 - MER50 LTR ERV1 -7 727 550 23 33 0 0 chr12 12121312 12121342 -131665113 + GC_rich Low_complexity Low_complexity 1 30 0 549 155 10 10 chr12 12121504 12121601 -131664854 + AluSp/q SINE Alu 195 291 -22 1302 125 0 0 chr12 12121603 12121787 -131664668 + AluSc SINE Alu 119 302 -7 966 316 18 24 chr12 12121788 12122466 -131663989 + L1PA8 LINE L1 5481 6154 -18 574 302 88 3 chr12 12123055 12123373 -131663082 - L1ME3A LINE L1 -208 5962 5618 973 225 131 0 chr12 12123622 12123866 -131662589 + AluJo SINE Alu 1 276 -36 371 337 18 12 chr12 12123975 12124138 -131662317 - HAL1 LINE L1 -954 1553 1390 421 221 106 53 chr12 12124230 12124438 -131662017 - L1MEd LINE L1 -4967 1152 934 1593 203 0 7 chr12 12126402 12126703 -131659752 + AluJo SINE Alu 1 299 -13 4944 53 0 2 chr12 12126979 12127604 -131658851 + L1P LINE L1 4224 4847 -1299 1957 129 46 15 chr12 12127723 12128049 -131658406 - MER9 LTR ERVK -175 336 1 26 0 0 0 chr12 12128087 12128113 -131658342 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 12128886 12128908 -131657547 + AT_rich Low_complexity Low_complexity 1 22 0 548 305 76 6 chr12 12129159 12129474 -131656981 - L1ME3 LINE L1 -206 5939 5603 308 334 104 28 chr12 12129727 12130044 -131656411 - L1ME3 LINE L1 -4762 1548 1208 341 223 118 52 chr12 12130052 12130263 -131656192 - L1ME3 LINE L1 -4971 1148 924 14343 56 2 1 chr12 12130988 12132835 -131653620 + L1P LINE L1 2803 4651 -1495 325 336 73 33 chr12 12132835 12133109 -131653346 + L1M4 LINE L1 4066 4350 -1796 309 290 68 59 chr12 12133120 12133138 -131653317 + L1M4 LINE L1 4481 4497 -1649 1668 175 11 3 chr12 12133138 12133423 -131653032 + AluJb SINE Alu 1 287 -25 309 290 68 59 chr12 12133423 12133625 -131652830 + L1M4 LINE L1 4497 4703 -1443 1828 111 0 4 chr12 12134252 12134504 -131651951 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 12134899 12134930 -131651525 + AT_rich Low_complexity Low_complexity 1 31 0 1569 184 38 3 chr12 12136273 12136566 -131649889 - AluJo SINE Alu -9 303 1 1467 338 53 38 chr12 12136627 12137233 -131649222 + HERVL LTR ERVL 2121 2716 -3048 1510 209 3 0 chr12 12137233 12137516 -131648939 + AluJb SINE Alu 3 286 -26 1467 338 53 38 chr12 12137516 12138098 -131648357 + HERVL LTR ERVL 2716 3327 -2437 28 0 0 0 chr12 12138982 12139010 -131647445 + AT_rich Low_complexity Low_complexity 1 28 0 1835 168 9 54 chr12 12139397 12139843 -131646612 - L1MC/D LINE L1 -2040 5745 5320 5228 150 18 3 chr12 12139862 12140716 -131645739 - L1MC1 LINE L1 -9 6324 5459 561 261 7 14 chr12 12142124 12142266 -131644189 + MIR SINE MIR 18 158 -104 1539 191 3 10 chr12 12142266 12142560 -131643895 - AluSq SINE Alu -17 296 5 415 363 183 6 chr12 12142717 12143045 -131643410 - L2 LINE L2 -1115 2199 1814 296 332 35 15 chr12 12143117 12143319 -131643136 + HERVL LTR ERVL 1715 1920 -3734 557 203 16 8 chr12 12143360 12143483 -131642972 + MER50 LTR ERV1 3 126 -608 2930 202 9 37 chr12 12143630 12144813 -131641642 - L1 LINE L1 -3240 4325 3173 2472 74 15 0 chr12 12144813 12145138 -131641317 - L1PA7 LINE L1 -4 6150 5821 272 280 53 61 chr12 12145143 12145275 -131641180 - MIR SINE MIR -127 135 5 26 30 0 0 chr12 12146638 12146671 -131639784 + AT_rich Low_complexity Low_complexity 1 33 0 4530 73 16 0 chr12 12146800 12147592 -131638863 - L1PA6 LINE L1 -290 5864 5064 7586 33 0 0 chr12 12148646 12150174 -131636281 - L1PA3 LINE L1 0 6155 4628 1168 48 0 0 chr12 12150174 12150319 -131636136 + L1P LINE L1 4311 4455 -1691 330 157 28 36 chr12 12150441 12150524 -131635931 + L1MC3 LINE L1 6788 6897 -924 2915 197 89 23 chr12 12150530 12151224 -131635231 + L1MC3 LINE L1 7046 7785 0 1299 210 41 4 chr12 12151936 12152207 -131634248 + AluJo SINE Alu 1 281 -31 327 331 63 17 chr12 12152354 12152529 -131633926 - MIR SINE MIR -79 183 1 21 57 0 0 chr12 12152604 12152639 -131633816 + AT_rich Low_complexity Low_complexity 1 35 0 189 178 0 0 chr12 12152959 12153004 -131633451 + (TATG)n Simple_repeat Simple_repeat 1 45 0 217 235 96 96 chr12 12154536 12154672 -131631783 + MIR SINE MIR 5 140 -122 983 114 0 0 chr12 12154674 12154806 -131631649 + AluSq/x SINE Alu 4 135 -178 1348 220 116 11 chr12 12154989 12155344 -131631111 + MLT1D LTR MaLR 114 505 0 481 264 102 27 chr12 12156236 12156552 -131629903 + L1ME3A LINE L1 5499 5854 -320 1643 179 3 10 chr12 12157087 12157383 -131629072 - AluJb SINE Alu -18 294 1 1089 189 0 15 chr12 12157878 12158079 -131628376 - AluJb SINE Alu -103 209 12 21 36 0 0 chr12 12158417 12158445 -131628010 + AT_rich Low_complexity Low_complexity 1 28 0 1082 56 0 7 chr12 12159065 12159207 -131627248 + L1PA3 LINE L1 6015 6155 0 1102 206 42 0 chr12 12159991 12160278 -131626177 + L1M4 LINE L1 3209 3507 -2639 2459 36 3 7 chr12 12160467 12160768 -131625687 - AluY SINE Alu -11 300 1 22 56 0 0 chr12 12160837 12160873 -131625582 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 12160964 12160987 -131625468 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr12 12161248 12161298 -131625157 + AT_rich Low_complexity Low_complexity 1 50 0 6855 66 3 2 chr12 12161562 12162837 -131623618 + L1PA5 LINE L1 4877 6154 0 303 340 75 0 chr12 12162974 12163174 -131623281 + L1M4 LINE L1 3775 3989 -2157 8641 136 3 8 chr12 12163666 12164995 -131621460 - L1P3 LINE L1 -5138 1323 1 688 239 62 84 chr12 12165348 12165703 -131620752 + MLT-int LTR MaLR 482 828 -907 2479 216 47 10 chr12 12165708 12166223 -131620232 + MSTD-int LTR MaLR 1202 1735 0 1533 207 94 0 chr12 12166223 12166585 -131619870 + MSTD LTR MaLR 1 396 0 1891 153 7 0 chr12 12166881 12167176 -131619279 - AluSq SINE Alu -15 298 2 25 31 0 0 chr12 12167923 12167955 -131618500 + AT_rich Low_complexity Low_complexity 1 32 0 357 24 0 0 chr12 12168529 12168571 -131617884 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr12 12168919 12168940 -131617515 + AT_rich Low_complexity Low_complexity 1 21 0 248 280 151 21 chr12 12169558 12169744 -131616711 - MLT1G LTR MaLR -371 219 10 299 181 0 35 chr12 12170829 12170945 -131615510 + (TA)n Simple_repeat Simple_repeat 1 112 0 195 42 0 0 chr12 12170995 12171019 -131615436 + (TA)n Simple_repeat Simple_repeat 2 25 0 380 229 92 23 chr12 12171197 12171328 -131615127 + L2 LINE L2 3174 3313 0 369 308 39 39 chr12 12172019 12172175 -131614280 - L2 LINE L2 0 3313 3158 183 100 0 0 chr12 12173261 12173291 -131613164 + (CA)n Simple_repeat Simple_repeat 1 30 0 6816 46 6 32 chr12 12174022 12175316 -131611139 - L1PA3 LINE L1 0 6155 4888 384 291 130 55 chr12 12175703 12176050 -131610405 + L1MEc LINE L1 1263 1635 -4761 360 219 168 31 chr12 12176277 12176473 -131609982 + L1ME LINE L1 5600 5822 -348 732 126 31 8 chr12 12176612 12176739 -131609716 + MER9 LTR ERVK 382 511 0 1531 264 62 9 chr12 12178386 12178822 -131607633 + L1ME LINE L1 35 493 -5577 27 49 0 0 chr12 12179188 12179229 -131607226 + AT_rich Low_complexity Low_complexity 1 41 0 5439 147 47 28 chr12 12179537 12180714 -131605741 - L1MA2 LINE L1 0 6304 5101 24 0 0 0 chr12 12182337 12182361 -131604094 + AT_rich Low_complexity Low_complexity 1 24 0 1472 189 48 0 chr12 12182365 12182635 -131603820 + AluJb SINE Alu 3 285 -27 458 352 18 40 chr12 12182722 12183049 -131603406 + HERVL40 LTR ERVL 2803 3122 -2532 2940 199 19 11 chr12 12283262 12283909 -131502546 - L1P LINE L1 -798 5348 4697 376 239 23 34 chr12 12283924 12284012 -131502443 + MLT1C LTR MaLR 1 87 -418 1076 181 0 0 chr12 12284012 12284178 -131502277 - AluJo SINE Alu -10 302 137 743 242 113 51 chr12 12284179 12284536 -131501919 + MLT1C LTR MaLR 80 618 -8 380 286 71 14 chr12 12284867 12285007 -131501448 - L2 LINE L2 -206 3066 2919 3604 64 2 7 chr12 12285072 12285522 -131500933 + LTR7 LTR ERV1 1 448 -2 21039 90 58 29 chr12 12285524 12288723 -131497732 + HERVH LTR ERV1 1 3290 -4423 2741 121 16 2 chr12 12288713 12289143 -131497312 + HERVH LTR ERV1 3492 3927 -3786 * 771 236 8 114 chr12 12289686 12290037 -131496418 + MLT1B LTR MaLR 57 370 -20 225 203 0 34 chr12 12290054 12290113 -131496342 - L2 LINE L2 -924 2390 2334 4917 205 25 27 chr12 12290854 12291975 -131494480 + HSMAR2 DNA Mariner 5 1123 -179 353 292 29 15 chr12 12291977 12292114 -131494341 + HERVL40 LTR ERVL 109 247 -5283 326 246 0 0 chr12 12293265 12293326 -131493129 - MER69 DNA AcHobo -97 80 20 327 263 11 40 chr12 12293391 12293566 -131492889 + (CACCC)n Simple_repeat Simple_repeat 4 173 0 180 97 0 0 chr12 12293567 12293598 -131492857 + (C)n Simple_repeat Simple_repeat 1 31 0 332 284 47 31 chr12 12293938 12294065 -131492390 + L2 LINE L2 3181 3309 -4 466 261 134 0 chr12 12294192 12294326 -131492129 + L2 LINE L2 2923 3074 -239 784 142 16 24 chr12 12294414 12294541 -131491914 - AluJo SINE Alu -185 127 2 341 224 224 21 chr12 12294548 12294691 -131491764 + L2 LINE L2 3142 3313 0 22 0 0 0 chr12 12294728 12294750 -131491705 + AT_rich Low_complexity Low_complexity 1 22 0 1667 170 46 0 chr12 12295219 12295501 -131490954 - AluJb SINE Alu -17 295 1 207 0 0 0 chr12 12295555 12295578 -131490877 + (T)n Simple_repeat Simple_repeat 1 23 0 6432 91 51 2 chr12 12296892 12298181 -131488274 - L1PA13 LINE L1 0 6163 4847 4988 166 9 1 chr12 12298181 12299046 -131487409 + L1PA13 LINE L1 3976 4847 -1299 1718 181 10 23 chr12 12299159 12299469 -131486986 - AluJo SINE Alu -6 306 1 2066 137 140 11 chr12 12299876 12300255 -131486200 - MSTA LTR MaLR 0 428 1 435 138 319 0 chr12 12300275 12300369 -131486086 - MER3 DNA MER1_type -57 152 29 3645 140 62 12 chr12 12301204 12301784 -131484671 + MER4B LTR ERV1 1 609 -1 360 298 93 12 chr12 12302634 12302795 -131483660 - MIR SINE MIR 0 262 89 1593 67 19 19 chr12 12303909 12304118 -131482337 - L1PA10 LINE L1 -12 6156 5948 544 130 0 28 chr12 12304828 12304936 -131481519 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 1369 162 113 35 chr12 12305062 12305346 -131481109 + AluJo SINE Alu 1 306 -6 1338 164 0 5 chr12 12305891 12306104 -131480351 + AluJb SINE Alu 85 296 -16 187 308 15 15 chr12 12306106 12306171 -131480284 + MER5A DNA MER1_type 46 110 -79 291 381 34 0 chr12 12306514 12306661 -131479794 + L2 LINE L2 3121 3272 0 194 212 0 0 chr12 12307237 12307270 -131479185 + L2 LINE L2 3271 3303 -10 2061 196 39 61 chr12 12307450 12307961 -131478494 + LTR54 LTR ERV1 8 507 -3 217 200 20 20 chr12 12308005 12308055 -131478400 + MIR SINE MIR 78 127 -81 242 135 0 0 chr12 12308623 12308660 -131477795 - MLT1J LTR MaLR -48 463 427 378 302 48 21 chr12 12308706 12308965 -131477490 - MLT1J LTR MaLR -174 337 33 720 202 0 0 chr12 12309088 12309207 -131477248 - FLAM_A SINE Alu -14 119 1 650 236 16 102 chr12 12310732 12310986 -131475469 + MIR SINE MIR 30 261 -1 3841 156 23 68 chr12 12311000 12311541 -131474914 - L1MB2 LINE L1 -3 6168 5673 1943 151 0 0 chr12 12311541 12311825 -131474630 + AluSx SINE Alu 6 289 -23 3841 156 23 68 chr12 12311825 12312073 -131474382 - L1MB2 LINE L1 -498 5673 5415 252 285 97 35 chr12 12312483 12312627 -131473828 + L2 LINE L2 2487 2639 -675 999 252 27 17 chr12 12312976 12313274 -131473181 - AluJb SINE Alu -1 301 1 4569 79 35 36 chr12 12313471 12314128 -131472327 - SVA Other Other 0 1386 731 375 268 103 56 chr12 12315082 12315295 -131471160 + MIR SINE MIR 6 228 -34 773 350 91 20 chr12 12315363 12316023 -131470432 + L2 LINE L2 1395 2101 -1213 1307 242 39 76 chr12 12316204 12316562 -131469893 - L1MDa LINE L1 -3930 2610 2283 1638 52 0 0 chr12 12316562 12316755 -131469700 + L1PA4 LINE L1 5963 6155 0 1307 242 39 76 chr12 12316755 12317015 -131469440 - L1MDa LINE L1 -4257 2283 2015 3779 182 152 17 chr12 12317040 12318110 -131468345 - L1P LINE L1 -1499 4647 3449 207 0 0 0 chr12 12318238 12318261 -131468194 + (CA)n Simple_repeat Simple_repeat 1 23 0 342 330 9 0 chr12 12318668 12318780 -131467675 + MIR3 SINE MIR 85 197 -11 360 315 12 42 chr12 12318802 12318967 -131467488 + MIR3 SINE MIR 42 201 -7 204 355 0 0 chr12 12319069 12319145 -131467310 + CT-rich Low_complexity Low_complexity 3 78 0 234 270 195 50 chr12 12320622 12320781 -131465674 + MIR SINE MIR 8 189 -73 205 294 0 0 chr12 12321084 12321135 -131465320 + C-rich Low_complexity Low_complexity 1 51 0 359 206 11 22 chr12 12321141 12321233 -131465222 - L1 LINE L1 -1172 4974 4884 1444 187 70 52 chr12 12321233 12321343 -131465112 + MSTB LTR MaLR 1 108 -318 2448 120 28 14 chr12 12321343 12321702 -131464753 + THE1B LTR MaLR 1 364 0 1444 187 70 52 chr12 12321702 12321992 -131464463 + MSTB LTR MaLR 108 408 -18 2618 32 0 0 chr12 12322195 12322505 -131463950 - L1P LINE L1 -1001 5145 4836 417 223 29 29 chr12 12322504 12322643 -131463812 - L1ME LINE L1 -606 5556 5418 * 431 246 41 16 chr12 12323169 12323291 -131463164 + MER65B LTR ERV1 1 125 -406 313 272 92 95 chr12 12323297 12323665 -131462790 + MER65A LTR ERV1 79 445 0 269 270 56 71 chr12 12323777 12323903 -131462552 - L2 LINE L2 -5 3267 3144 560 53 13 0 chr12 12324271 12324347 -131462108 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1756 124 0 4 chr12 12324348 12324590 -131461865 - AluSx SINE Alu -39 273 33 517 205 114 18 chr12 12324590 12324756 -131461699 - FRAM SINE Alu 0 176 1 209 250 0 0 chr12 12325353 12325397 -131461058 + C-rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 12325570 12325602 -131460853 + GC_rich Low_complexity Low_complexity 1 32 0 2415 72 10 3 chr12 12326130 12326437 -131460018 - AluSc SINE Alu 0 309 1 597 144 34 34 chr12 12326772 12326890 -131459565 + FLAM_C SINE Alu 7 124 -19 311 265 83 38 chr12 12328106 12328238 -131458217 - MIR SINE MIR -118 144 7 28 0 0 0 chr12 12329342 12329370 -131457085 + AT_rich Low_complexity Low_complexity 1 28 0 1806 146 44 0 chr12 12329373 12329648 -131456807 - AluJb SINE Alu -25 287 1 2857 124 7 19 chr12 12329983 12330409 -131456046 - MSTC LTR MaLR -5 423 3 484 291 56 80 chr12 12330578 12330880 -131455575 + L1ME3A LINE L1 5665 5936 -234 1731 178 31 14 chr12 12331118 12331472 -131454983 + MLT1A1 LTR MaLR 1 360 -5 2088 111 7 0 chr12 12331507 12331811 -131454644 - AluSx SINE Alu 0 306 1 937 196 0 0 chr12 12331820 12331973 -131454482 - FRAM SINE Alu -23 153 1 315 71 0 0 chr12 12332954 12332996 -131453459 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 621 284 36 40 chr12 12334269 12334519 -131451936 + MIR SINE MIR 14 262 0 1521 111 12 83 chr12 12334940 12335192 -131451263 + AluSx SINE Alu 2 235 -77 1903 156 7 7 chr12 12335234 12335536 -131450919 + AluSx SINE Alu 5 306 -6 2025 103 39 4 chr12 12335600 12335881 -131450574 + AluSx SINE Alu 1 291 -21 189 107 0 0 chr12 12337067 12337095 -131449360 + (T)n Simple_repeat Simple_repeat 1 28 0 183 301 119 34 chr12 12337326 12337562 -131448893 + L2 LINE L2 2950 3205 -108 735 229 62 65 chr12 12337632 12337938 -131448517 + L1MC5 LINE L1 7613 7917 -44 307 255 53 0 chr12 12338265 12338359 -131448096 - HsTC2 DNA Tc2 -220 1678 1580 1865 131 44 0 chr12 12339074 12339349 -131447106 + AluSx SINE Alu 1 287 -25 7118 46 12 2 chr12 12339457 12340859 -131445596 + L1PA7 LINE L1 4767 6154 0 202 164 75 45 chr12 12342366 12342433 -131444022 - MIR SINE MIR -63 145 77 2197 164 98 39 chr12 12343331 12343813 -131442642 + MLT2B1 LTR ERVL 1 510 -10 305 255 69 29 chr12 12344608 12344710 -131441745 - MIR SINE MIR -89 173 68 274 231 7 14 chr12 12346454 12346593 -131439862 + CT-rich Low_complexity Low_complexity 1 138 0 1731 186 0 10 chr12 12346593 12346888 -131439567 - AluJo SINE Alu -20 292 1 423 0 0 0 chr12 12347755 12347802 -131438653 + (CA)n Simple_repeat Simple_repeat 2 48 0 328 245 21 21 chr12 12350642 12350736 -131435719 + MIR SINE MIR 34 127 -81 944 217 50 4 chr12 12350793 12351033 -131435422 - L1MA4 LINE L1 -2 6298 6048 630 193 18 12 chr12 12352941 12353107 -131433348 + GA-rich Low_complexity Low_complexity 3 169 0 1799 168 13 10 chr12 12354284 12354418 -131432037 + AluJo SINE Alu 1 133 -179 2256 116 0 0 chr12 12354418 12354721 -131431734 + AluSg1 SINE Alu 1 303 -6 1799 168 13 10 chr12 12354721 12354889 -131431566 + AluJo SINE Alu 133 304 -8 211 258 30 15 chr12 12355203 12355269 -131431186 - L2 LINE L2 -9 3304 3238 322 318 56 8 chr12 12356824 12356950 -131429505 - L2 LINE L2 -4 3309 3178 1612 151 70 15 chr12 12357123 12357394 -131429061 + AluSx SINE Alu 5 290 -22 276 30 0 0 chr12 12358627 12358660 -131427795 + (CA)n Simple_repeat Simple_repeat 2 34 0 1724 154 7 18 chr12 12361125 12361405 -131425050 + AluJo SINE Alu 1 277 -35 2395 78 20 0 chr12 12361801 12362095 -131424360 - AluSx SINE Alu -12 300 1 1510 149 51 4 chr12 12362215 12362491 -131423964 - L1MA4 LINE L1 -3 6297 6009 315 290 12 99 chr12 12363797 12363883 -131422572 + MIR3 SINE MIR 37 104 -104 2105 129 3 0 chr12 12363883 12364185 -131422270 + AluSx SINE Alu 1 303 -9 315 290 12 99 chr12 12364185 12364260 -131422195 + MIR3 SINE MIR 104 184 -24 226 231 216 15 chr12 12364341 12364475 -131421980 - MIR SINE MIR -82 180 20 228 367 73 7 chr12 12365101 12365251 -131421204 + MIR3 SINE MIR 19 178 -30 624 272 30 65 chr12 12366105 12366337 -131420118 + MIR SINE MIR 30 253 -9 297 167 0 0 chr12 12366352 12366406 -131420049 + GA-rich Low_complexity Low_complexity 1 54 0 302 296 95 28 chr12 12367965 12368144 -131418311 + MIR3 SINE MIR 18 208 0 2205 107 3 3 chr12 12368305 12368596 -131417859 + AluSx SINE Alu 2 292 -20 185 316 120 8 chr12 12368798 12368915 -131417540 - L2 LINE L2 -1 3271 3142 240 59 0 0 chr12 12371902 12371936 -131414519 + (T)n Simple_repeat Simple_repeat 1 34 0 184 89 22 44 chr12 12372444 12372489 -131413966 + (CGGGG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr12 12372601 12372633 -131413822 + GC_rich Low_complexity Low_complexity 1 32 0 34 85 0 23 chr12 12372832 12372962 -131413493 + GC_rich Low_complexity Low_complexity 1 127 0 21 0 0 0 chr12 12373825 12373846 -131412609 + AT_rich Low_complexity Low_complexity 1 21 0 2294 61 44 7 chr12 12374371 12374668 -131411787 - AluY SINE Alu -3 308 1 355 230 63 24 chr12 12374780 12374906 -131411549 + MIR SINE MIR 132 262 0 5006 143 47 17 chr12 12375064 12375960 -131410495 - Cheshire DNA MER1_type 0 2420 1498 1832 280 69 28 chr12 12375964 12376967 -131409488 - L1MEc LINE L1 -4190 2932 1878 503 176 176 0 chr12 12376967 12377075 -131409380 - FLAM_C SINE Alu -3 130 4 1832 280 69 28 chr12 12377075 12377176 -131409279 - L1MEc LINE L1 -5244 1878 1783 1815 95 46 8 chr12 12377176 12377438 -131409017 - AluY SINE Alu -39 272 1 2325 80 0 39 chr12 12377469 12377781 -131408674 - AluY SINE Alu -11 300 1 291 276 53 79 chr12 12377785 12378013 -131408442 - L1MEc LINE L1 -5073 1350 1129 363 286 75 28 chr12 12378404 12378659 -131407796 - L1MEc LINE L1 -6120 303 37 2135 133 0 7 chr12 12378771 12379080 -131407375 + AluSg1 SINE Alu 2 308 -1 216 0 0 0 chr12 12379430 12379454 -131407001 + (TG)n Simple_repeat Simple_repeat 2 25 0 1381 249 36 10 chr12 12379505 12379959 -131406496 - MLT2F LTR ERVL -159 504 1 2860 174 11 43 chr12 12380359 12380888 -131405567 - MLT2B1 LTR ERVL -8 512 1 246 32 0 0 chr12 12380943 12380974 -131405481 + (CA)n Simple_repeat Simple_repeat 1 31 0 257 277 100 31 chr12 12381052 12381166 -131405289 + ERVL-E LTR ERVL 1266 1391 -4373 789 247 0 6 chr12 12381166 12381324 -131405131 + FRAM SINE Alu 1 157 -9 257 277 100 31 chr12 12381324 12381339 -131405116 + ERVL-E LTR ERVL 1391 1404 -4360 213 175 0 0 chr12 12381371 12381411 -131405044 + G-rich Low_complexity Low_complexity 5 44 0 222 86 57 0 chr12 12381414 12381449 -131405006 + GA-rich Low_complexity Low_complexity 2 38 0 2645 276 78 33 chr12 12381449 12381719 -131404736 + ERVL-E LTR ERVL 1376 1633 -4131 1559 144 0 12 chr12 12381719 12381982 -131404473 + AluSx SINE Alu 44 303 0 2645 276 78 33 chr12 12381982 12382521 -131403934 + ERVL-E LTR ERVL 1633 2238 -3526 2226 137 36 39 chr12 12382521 12382885 -131403570 - THE1B LTR MaLR -1 363 1 2645 276 78 33 chr12 12382885 12383037 -131403418 + ERVL-E LTR ERVL 2238 2382 -3382 687 288 31 3 chr12 12383047 12383401 -131403054 + ERVL-E LTR ERVL 2624 2977 -2677 * 3012 251 21 6 chr12 12383398 12384106 -131402349 + ERVL-E LTR ERVL 3091 3809 -1955 * 3436 265 64 66 chr12 12384104 12384410 -131402045 + ERVL-E LTR ERVL 4411 4716 -1048 2245 110 3 0 chr12 12384410 12384709 -131401746 - AluSq SINE Alu -13 300 1 3436 265 64 66 chr12 12384709 12385030 -131401425 + ERVL-E LTR ERVL 4716 5036 -728 2347 52 3 85 chr12 12385030 12385360 -131401095 + AluY SINE Alu 1 303 -8 3436 265 64 66 chr12 12385360 12385941 -131400514 + ERVL-E LTR ERVL 5036 5619 -145 3484 121 84 6 chr12 12385941 12386430 -131400025 - MER1A DNA MER1_type 0 527 1 3436 265 64 66 chr12 12386430 12386563 -131399892 + ERVL-E LTR ERVL 5619 5751 -13 622 289 28 38 chr12 12386564 12386758 -131399697 + MLT2E LTR ERVL 28 226 -402 554 311 7 7 chr12 12386779 12386927 -131399528 + MLT2E LTR ERVL 336 483 -145 614 236 117 48 chr12 12386928 12387343 -131399112 - L1MC5 LINE L1 -876 7085 2759 392 121 18 0 chr12 12387371 12387436 -131399019 - MER58 DNA MER1_type 0 2420 2355 410 279 55 58 chr12 12387458 12387805 -131398650 - L1MC5 LINE L1 -3653 2493 2148 462 368 55 18 chr12 12387959 12388231 -131398224 + MLT1I LTR MaLR 126 407 -2 2627 40 0 7 chr12 12388397 12388701 -131397754 - AluY SINE Alu -9 302 1 373 253 153 6 chr12 12388868 12389123 -131397332 - MER46C DNA MER2_type 0 338 2 1766 167 0 11 chr12 12389364 12389651 -131396804 + AluJo SINE Alu 6 289 -23 283 286 111 58 chr12 12389836 12390007 -131396448 - L3 LINE CR1 -32 1545 1366 187 222 0 0 chr12 12390044 12390080 -131396375 - L3 LINE CR1 -354 1223 1188 2112 107 3 43 chr12 12390189 12390515 -131395940 - AluSp SINE Alu 0 313 1 454 262 153 82 chr12 12392050 12392233 -131394222 - MER91A DNA MER1_type 0 196 1 2526 54 0 0 chr12 12392878 12393176 -131393279 + AluY SINE Alu 1 298 -13 1977 162 3 0 chr12 12393190 12393492 -131392963 + AluJo SINE Alu 1 303 -9 239 275 38 100 chr12 12394061 12394106 -131392349 - MIR3 SINE MIR -21 187 141 769 214 55 33 chr12 12394106 12394180 -131392275 - MER5A DNA MER1_type 0 189 118 2305 115 0 0 chr12 12394180 12394484 -131391971 - AluSx SINE Alu -8 304 1 769 214 55 33 chr12 12394484 12394591 -131391864 - MER5A DNA MER1_type -71 118 4 239 275 38 100 chr12 12394591 12394705 -131391750 - MIR3 SINE MIR -67 141 38 2795 141 30 36 chr12 12395031 12395415 -131391040 - L1MA4 LINE L1 -4 6296 5911 2417 75 0 3 chr12 12395415 12395722 -131390733 - AluY SINE Alu -5 306 1 1853 178 0 3 chr12 12395724 12396017 -131390438 - AluJo SINE Alu -16 296 5 2795 141 30 36 chr12 12396017 12396126 -131390329 - L1MA4 LINE L1 -390 5910 5803 1032 188 0 0 chr12 12396126 12396296 -131390159 + FRAM SINE Alu 1 170 -6 445 109 16 0 chr12 12396296 12396360 -131390095 + L1MA4A LINE L1 5905 5969 -334 6754 151 20 13 chr12 12396365 12397918 -131388537 - L1MA4 LINE L1 -508 5795 4228 783 83 0 0 chr12 12397918 12398026 -131388429 + (TA)n Simple_repeat Simple_repeat 1 108 0 6754 151 20 13 chr12 12398026 12398128 -131388327 - L1MA4 LINE L1 -2075 4228 4128 923 180 155 126 chr12 12398141 12398664 -131387791 - MER34C LTR ERV1 -2 583 46 799 195 63 155 chr12 12398673 12398882 -131387573 - MER34C-int LTR ERV1 -1 6330 6103 301 114 0 0 chr12 12398882 12398926 -131387529 - L1M2 LINE L1 -741 5556 5513 799 195 63 155 chr12 12398926 12399380 -131387075 - MER34C-int LTR ERV1 -228 6103 4411 384 191 100 36 chr12 12399409 12399519 -131386936 - LTR37A LTR ERV1 -309 117 1 7156 172 44 72 chr12 12399520 12399929 -131386526 - MER34C-int LTR ERV1 -687 4249 3830 4058 101 34 2 chr12 12399929 12400466 -131385989 - MER41A LTR ERV1 0 554 1 7156 172 44 72 chr12 12400466 12400693 -131385762 - MER34C-int LTR ERV1 -1106 3830 3598 1586 172 25 11 chr12 12400693 12400978 -131385477 + AluJo SINE Alu 1 289 -23 7156 172 44 72 chr12 12400978 12401791 -131384664 - MER34C-int LTR ERV1 -1338 3598 2764 1852 159 3 31 chr12 12401791 12402112 -131384343 + AluJb SINE Alu 1 312 0 7156 172 44 72 chr12 12402112 12402128 -131384327 - MER34C-int LTR ERV1 -2172 2764 2749 668 171 26 17 chr12 12402128 12402245 -131384210 + FLAM_C SINE Alu 1 118 -15 183 42 0 0 chr12 12402249 12402273 -131384182 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2079 90 19 32 chr12 12402280 12402618 -131383837 + AluSq SINE Alu 1 313 0 7156 172 44 72 chr12 12402618 12402893 -131383562 - MER34C-int LTR ERV1 -2196 2740 2541 756 140 70 0 chr12 12402915 12403029 -131383426 - FRAM SINE Alu -36 140 19 30 59 0 0 chr12 12403173 12403224 -131383231 + AT_rich Low_complexity Low_complexity 1 51 0 1677 149 78 24 chr12 12403224 12403520 -131382935 - AluJo SINE Alu 0 312 1 1402 226 81 68 chr12 12403532 12403731 -131382724 - MER34C-int LTR ERV1 -2571 2365 2170 1721 77 0 14 chr12 12403731 12403952 -131382503 - L1PA8 LINE L1 -3 6169 5952 1402 226 81 68 chr12 12403952 12404430 -131382025 - MER34C-int LTR ERV1 -2766 2170 1679 2088 202 92 73 chr12 12404444 12405298 -131381157 - HUERS-P3b LTR ERV1 -2457 2414 904 2041 169 42 16 chr12 12405298 12405682 -131380773 + MSTA LTR MaLR 1 394 -34 2340 94 0 3 chr12 12405682 12405989 -131380466 - AluY SINE Alu -5 306 1 1004 33 100 0 chr12 12405992 12406112 -131380343 - AluYa5 SINE Alu -179 132 1 283 174 0 0 chr12 12406112 12406158 -131380297 + MSTA LTR MaLR 383 428 0 1077 263 76 57 chr12 12406311 12406916 -131379539 - HUERS-P3b LTR ERV1 -5402 929 355 254 213 21 0 chr12 12406948 12406995 -131379460 - HUERS-P3b LTR ERV1 -4889 2529 2482 1370 147 97 114 chr12 12407123 12407579 -131378876 + LTR7 LTR ERV1 1 448 -2 16546 89 34 22 chr12 12407581 12410395 -131376060 + HERVH LTR ERV1 1 2995 -4718 848 162 20 0 chr12 12410374 12410522 -131375933 + HERVH LTR ERV1 3140 3290 -4423 * 3500 97 4 4 chr12 12410521 12411015 -131375440 + HERVH LTR ERV1 3500 3993 -3720 4239 137 31 2 chr12 12411017 12411660 -131374795 + HERVH LTR ERV1 4488 5149 -2564 1491 116 19 0 chr12 12411661 12411877 -131374578 + HERVH LTR ERV1 5600 5819 -1894 * 1994 90 22 1 chr12 12411875 12412222 -131374233 + HERVH LTR ERV1 7322 7713 0 1493 158 119 75 chr12 12412222 12412651 -131373804 + LTR7 LTR ERV1 1 448 -2 861 199 141 100 chr12 12412978 12413446 -131373009 - MER34C LTR ERV1 -64 521 35 2344 82 0 3 chr12 12413688 12413979 -131372476 - AluSg SINE Alu -20 290 1 350 246 29 87 chr12 12414413 12414499 -131371956 + MIR3 SINE MIR 72 149 -59 950 243 84 63 chr12 12414499 12414832 -131371623 - MER102b DNA MER1_type 0 341 2 350 246 29 87 chr12 12414832 12414883 -131371572 + MIR3 SINE MIR 149 201 -7 2253 117 0 0 chr12 12415256 12415556 -131370899 + AluSx SINE Alu 1 300 -12 2443 74 3 0 chr12 12415849 12416148 -131370307 - AluSq SINE Alu -13 300 1 2033 127 48 0 chr12 12416349 12416641 -131369814 + AluJo SINE Alu 1 306 -6 2339 93 0 7 chr12 12416856 12417156 -131369299 - AluSg SINE Alu -12 298 1 803 198 188 102 chr12 12417383 12417894 -131368561 + MER34C LTR ERV1 31 585 0 260 336 0 19 chr12 12417972 12418076 -131368379 + MIR SINE MIR 158 259 -3 562 334 80 6 chr12 12418462 12418773 -131367682 + MLT1J2 LTR MaLR 115 448 -2 207 0 0 0 chr12 12418892 12418915 -131367540 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2109 81 0 4 chr12 12418947 12419206 -131367249 - AluSg SINE Alu -52 258 1 796 270 107 41 chr12 12419587 12419613 -131366842 + MLT1J2 LTR MaLR 36 59 -391 576 186 21 103 chr12 12419613 12419807 -131366648 - MER104 DNA MER2_type 0 180 3 796 270 107 41 chr12 12419807 12420206 -131366249 + MLT1J2 LTR MaLR 59 450 0 396 255 0 0 chr12 12420217 12420311 -131366144 + MIR SINE MIR 169 262 0 321 246 56 24 chr12 12421557 12421683 -131364772 - L1ME4a LINE L1 -3 6118 5989 1786 126 9 82 chr12 12422179 12422496 -131363959 - AluSx SINE Alu -18 294 1 180 235 118 20 chr12 12423251 12423302 -131363153 - L2 LINE L2 -76 3196 3141 623 67 90 0 chr12 12423468 12423587 -131362868 + AluSg/x SINE Alu 182 308 0 227 385 31 0 chr12 12423877 12424007 -131362448 - L2 LINE L2 -496 2818 2685 697 261 35 39 chr12 12424533 12424763 -131361692 - MER112 DNA MER1_type -9 251 23 343 228 106 41 chr12 12424838 12424961 -131361494 - MIR SINE MIR -57 151 21 1261 180 71 59 chr12 12425209 12425548 -131360907 - MER2 DNA MER2_type 0 344 2 412 288 31 31 chr12 12425859 12426019 -131360436 + MIR3 SINE MIR 9 168 -40 2316 90 0 0 chr12 12426506 12426795 -131359660 + AluSx SINE Alu 7 295 -17 1019 322 55 21 chr12 12426820 12427354 -131359101 - L2 LINE L2 0 3313 2765 395 285 46 26 chr12 12427977 12428128 -131358327 + MIR SINE MIR 109 262 0 542 359 28 35 chr12 12428132 12428422 -131358033 - L2 LINE L2 -541 2773 2486 2040 130 20 0 chr12 12428482 12428783 -131357672 - AluSx SINE Alu -5 307 1 1548 253 62 48 chr12 12429279 12429667 -131356788 + L2 LINE L2 2368 2781 -532 1785 182 11 40 chr12 12429667 12430019 -131356436 + MER61A LTR ERV1 2 343 0 1548 253 62 48 chr12 12430019 12430302 -131356153 + L2 LINE L2 2781 3059 -254 2380 91 0 0 chr12 12430687 12430983 -131355472 - AluSp SINE Alu -17 296 1 368 162 18 90 chr12 12431017 12431128 -131355327 + L2 LINE L2 3197 3299 -14 274 218 136 55 chr12 12431417 12431527 -131354928 - MIR SINE MIR -133 129 11 2513 71 0 3 chr12 12432542 12432852 -131353603 - AluY SINE Alu -2 309 1 276 125 47 0 chr12 12432880 12432944 -131353511 + GA-rich Low_complexity Low_complexity 3 69 0 2061 140 0 16 chr12 12433410 12433724 -131352731 + AluSx SINE Alu 1 309 -3 2187 132 0 22 chr12 12433985 12434304 -131352151 - AluSx SINE Alu 0 312 1 844 146 0 111 chr12 12434324 12434495 -131351960 - AluJb SINE Alu -20 292 141 481 296 98 40 chr12 12435224 12435552 -131350903 - L2 LINE L2 -820 2494 2148 427 193 220 37 chr12 12436164 12436273 -131350182 + FLAM_A SINE Alu 1 129 -4 26 0 0 0 chr12 12436473 12436499 -131349956 + AT_rich Low_complexity Low_complexity 1 26 0 853 180 186 6 chr12 12436516 12436699 -131349756 - AluSq SINE Alu -97 216 1 35 0 0 0 chr12 12436699 12436734 -131349721 + AT_rich Low_complexity Low_complexity 1 35 0 2513 52 0 0 chr12 12436734 12437025 -131349430 - AluY SINE Alu -20 291 1 1053 117 0 7 chr12 12437026 12437171 -131349284 - AluSq/x SINE Alu -168 144 1 198 347 28 0 chr12 12437414 12437486 -131348969 + MIR SINE MIR 81 154 -108 336 311 108 78 chr12 12437619 12437963 -131348492 - L2 LINE L2 -93 3179 2826 201 356 71 47 chr12 12438110 12438363 -131348092 - L2 LINE L2 -690 2624 2366 241 202 34 92 chr12 12438389 12438508 -131347947 - HAL1 LINE L1 -1481 1026 915 780 159 56 0 chr12 12438757 12438883 -131347572 - FLAM_A SINE Alu 0 133 1 265 286 65 13 chr12 12438892 12438969 -131347486 - HAL1 LINE L1 -2422 85 5 267 293 35 52 chr12 12439608 12439724 -131346731 - L2 LINE L2 -7 3306 3193 1647 167 10 20 chr12 12439781 12440080 -131346375 - AluJo SINE Alu -16 296 1 25 0 0 0 chr12 12440405 12440430 -131346025 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr12 12440826 12440851 -131345604 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 279 119 169 0 chr12 12440864 12440923 -131345532 - L2 LINE L2 -3 3269 3201 507 139 0 0 chr12 12441092 12441178 -131345277 - L1PB2 LINE L1 -3 6148 6063 1684 158 18 7 chr12 12441237 12441560 -131344895 - AluJo SINE Alu 0 326 1 2205 119 3 6 chr12 12443133 12443444 -131343011 + AluSx SINE Alu 1 310 -2 1768 157 17 3 chr12 12443821 12444108 -131342347 - AluJo SINE Alu -13 299 9 27 0 0 0 chr12 12444116 12444143 -131342312 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 12444222 12444250 -131342205 + AT_rich Low_complexity Low_complexity 1 28 0 2660 146 33 12 chr12 12445392 12445811 -131340644 + MSTA LTR MaLR 1 428 0 436 209 9 35 chr12 12445883 12445998 -131340457 - MIR SINE MIR -65 197 86 399 262 110 4 chr12 12446126 12446305 -131340150 - LTR40c LTR ERVL -119 346 142 1056 154 57 92 chr12 12446606 12446833 -131339622 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr12 12447443 12447465 -131338990 + AT_rich Low_complexity Low_complexity 1 22 0 3719 148 42 17 chr12 12447836 12448562 -131337893 + L1MC4 LINE L1 982 1820 -4606 2405 71 10 0 chr12 12448562 12448858 -131337597 - AluSp SINE Alu -14 299 1 3719 148 42 17 chr12 12448858 12449070 -131337385 + L1MC4 LINE L1 1820 2025 -4401 1709 150 26 46 chr12 12449092 12449399 -131337056 + AluJo SINE Alu 1 301 -11 9849 230 49 28 chr12 12450164 12453011 -131333444 + L1MC4 LINE L1 2725 8070 -252 2163 121 7 0 chr12 12453011 12453316 -131333139 + AluSx SINE Alu 3 309 -3 9849 230 49 28 chr12 12453316 12453476 -131332979 + L1MC4 LINE L1 8070 8225 -97 5103 106 11 68 chr12 12453964 12454512 -131331943 + L1PB4 LINE L1 5317 5895 -261 2375 85 0 16 chr12 12454512 12454828 -131331627 + AluY SINE Alu 1 311 0 5103 106 11 68 chr12 12454828 12455031 -131331424 + L1PB4 LINE L1 5895 6014 -142 2517 66 0 0 chr12 12455031 12455333 -131331122 + AluY SINE Alu 1 302 -9 5103 106 11 68 chr12 12455333 12455456 -131330999 + L1PB4 LINE L1 6014 6142 -14 2663 188 27 20 chr12 12455462 12455512 -131330943 + L1M4 LINE L1 4980 5028 -1156 2313 78 10 10 chr12 12455512 12455807 -131330648 + AluSg SINE Alu 1 295 -15 2663 188 27 20 chr12 12455807 12456580 -131329875 + L1M4 LINE L1 5028 5798 -386 21 36 0 0 chr12 12456610 12456638 -131329817 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 12456777 12456809 -131329646 + AT_rich Low_complexity Low_complexity 1 32 0 2150 135 18 6 chr12 12456820 12457153 -131329302 - MER1B DNA MER1_type 0 339 3 27 81 0 0 chr12 12457621 12457683 -131328772 + AT_rich Low_complexity Low_complexity 1 62 0 1623 192 7 0 chr12 12457691 12457972 -131328483 + AluJb SINE Alu 3 285 -27 183 42 0 0 chr12 12457972 12457996 -131328459 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 309 274 135 55 chr12 12458290 12458527 -131327928 - MLT1L LTR MaLR -5 610 355 1766 152 9 48 chr12 12459242 12459558 -131326897 - AluJo SINE Alu -4 308 5 417 234 102 16 chr12 12459652 12459780 -131326675 - L1ME4a LINE L1 -4 6117 5979 1932 103 69 28 chr12 12460006 12460297 -131326158 + AluSx SINE Alu 1 303 -9 287 167 0 0 chr12 12460505 12460547 -131325908 - 5S rRNA rRNA -79 42 1 1627 177 3 32 chr12 12461235 12461546 -131324909 + AluJo SINE Alu 1 302 -10 453 274 70 13 chr12 12462205 12462362 -131324093 + MIR3 SINE MIR 33 198 -10 312 160 0 0 chr12 12462508 12462558 -131323897 + MIR SINE MIR 92 141 -67 22 0 0 0 chr12 12462744 12462766 -131323689 + AT_rich Low_complexity Low_complexity 1 22 0 3274 197 66 92 chr12 12463156 12463318 -131323137 + L1MC3 LINE L1 5623 5788 -1997 1821 149 3 48 chr12 12463318 12463634 -131322821 - AluJo SINE Alu -10 302 1 3274 197 66 92 chr12 12463634 12463927 -131322528 + L1MC3 LINE L1 5788 6087 -1698 1869 154 7 3 chr12 12463927 12464213 -131322242 + AluJo SINE Alu 1 287 -25 3274 197 66 92 chr12 12464213 12464839 -131321616 + L1MC3 LINE L1 6087 6676 -1109 313 157 0 0 chr12 12464860 12464911 -131321544 - MER53 DNA DNA 0 189 139 341 70 18 0 chr12 12464916 12464973 -131321482 + (CA)n Simple_repeat Simple_repeat 2 59 0 415 92 0 40 chr12 12465672 12465748 -131320707 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 727 114 9 44 chr12 12467050 12467164 -131319291 + FRAM SINE Alu 37 146 -30 186 43 0 0 chr12 12467167 12467190 -131319265 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 235 287 124 8 chr12 12467205 12467334 -131319121 + MIR SINE MIR 53 196 -66 199 0 0 61 chr12 12467413 12467446 -131319009 + (CAT)n Simple_repeat Simple_repeat 3 33 0 389 287 90 0 chr12 12468353 12468475 -131317980 - MIR3 SINE MIR -67 141 9 380 248 5 101 chr12 12468912 12468990 -131317465 - L1ME1 LINE L1 -43 6123 6039 1292 174 109 7 chr12 12468990 12469266 -131317189 + AluJo SINE Alu 1 304 -8 380 248 5 101 chr12 12469266 12469405 -131317050 - L1ME1 LINE L1 -127 6039 5927 1174 200 18 49 chr12 12469417 12469702 -131316753 - L1MC4 LINE L1 0 8042 7767 1161 133 24 0 chr12 12469706 12469872 -131316583 + AluSg/x SINE Alu 140 309 -3 4628 199 94 43 chr12 12469894 12470503 -131315952 - L1MC4 LINE L1 -261 7781 7205 1941 126 29 0 chr12 12470503 12470781 -131315674 + AluJb SINE Alu 1 286 -26 4628 199 94 43 chr12 12470781 12471011 -131315444 - L1MC4 LINE L1 -837 7205 6988 2084 99 0 4 chr12 12471011 12471306 -131315149 - AluY SINE Alu 0 305 12 4628 199 94 43 chr12 12471306 12471723 -131314732 - L1MC4 LINE L1 -1054 6988 6458 246 340 122 20 chr12 12471961 12472158 -131314297 + L2 LINE L2 2642 2858 -456 352 310 67 106 chr12 12472282 12472537 -131313918 + L2 LINE L2 3018 3262 -10 2055 68 4 17 chr12 12472537 12472859 -131313596 + AluSg SINE Alu 1 279 -31 293 195 29 2 chr12 12472947 12473015 -131313440 + MLT1B LTR MaLR 330 390 0 270 279 11 28 chr12 12473041 12473155 -131313300 - MLT1F LTR MaLR -437 105 25 605 189 0 9 chr12 12473914 12474025 -131312430 - MLT1C LTR MaLR -4 463 354 4054 110 282 70 chr12 12474028 12475307 -131311148 - pTR5 LTR ERV1 0 2438 743 239 241 0 0 chr12 12475309 12475363 -131311092 - MLT1C LTR MaLR -112 355 302 1284 87 5 32 chr12 12475448 12475633 -131310822 + LTR9 LTR ERV1 1 180 -432 445 115 16 0 chr12 12475877 12475938 -131310517 - U7 snRNA snRNA 0 63 2 665 100 11 0 chr12 12478055 12478145 -131308310 + FLAM_A SINE Alu 32 122 -20 252 0 0 0 chr12 12478647 12478675 -131307780 + (CA)n Simple_repeat Simple_repeat 2 29 0 342 330 9 0 chr12 12479082 12479194 -131307261 + MIR3 SINE MIR 85 197 -11 360 315 12 42 chr12 12479216 12479381 -131307074 + MIR3 SINE MIR 42 201 -7 218 338 0 12 chr12 12479483 12479563 -131306892 + CT-rich Low_complexity Low_complexity 6 84 0 1570 222 0 0 chr12 12479827 12480179 -131306276 + AluJb SINE Alu 3 354 0 192 77 0 0 chr12 12480179 12480205 -131306250 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 815 101 8 214 chr12 12480314 12480552 -131305903 - MER53 DNA DNA 0 189 1 1347 214 63 9 chr12 12480714 12481045 -131305410 + MLT1A2 LTR MaLR 1 349 -25 194 219 0 0 chr12 12481209 12481250 -131305205 + MIR SINE MIR 65 105 -103 612 168 11 6 chr12 12481449 12481628 -131304827 + (CA)n Simple_repeat Simple_repeat 1 180 0 273 169 0 0 chr12 12481661 12481720 -131304735 + (CA)n Simple_repeat Simple_repeat 1 59 0 565 304 92 17 chr12 12482800 12483005 -131303450 + MIR SINE MIR 1 228 -34 2520 152 22 0 chr12 12483005 12483413 -131303042 + L1MB5 LINE L1 5746 6162 -12 565 304 92 17 chr12 12483413 12483447 -131303008 + MIR SINE MIR 228 258 -4 7683 52 0 0 chr12 12485135 12486093 -131300362 - L1PA8 LINE L1 -8 6164 5221 21 71 0 0 chr12 12486168 12486210 -131300245 + AT_rich Low_complexity Low_complexity 1 42 0 1196 252 45 38 chr12 12487039 12487490 -131298965 - MER77 LTR ERV1 -6 599 177 1007 252 19 56 chr12 12488008 12488329 -131298126 + L1MD3 LINE L1 7686 7994 -1 2636 132 48 10 chr12 12488453 12488869 -131297586 + MSTB1 LTR MaLR 1 432 0 648 222 52 20 chr12 12488997 12489150 -131297305 - MER63 DNA MER1_type -277 785 2 493 310 33 18 chr12 12489161 12489496 -131296959 - L1M4 LINE L1 -869 5277 4938 484 229 98 49 chr12 12489941 12490156 -131296299 + MLT1H LTR MaLR 335 549 0 16968 42 1 1 chr12 12490273 12492322 -131294133 + L1P LINE L1 2599 4647 -1499 3681 247 33 55 chr12 12492347 12492607 -131293848 + L1MDa LINE L1 2015 2279 -4261 1638 52 0 0 chr12 12492607 12492800 -131293655 - L1PA4 LINE L1 0 6155 5963 3681 247 33 55 chr12 12492800 12494340 -131292115 + L1MDa LINE L1 2279 3796 -2744 252 284 0 0 chr12 12494360 12494466 -131291989 + L1MDa LINE L1 3309 3414 -3126 2477 57 0 0 chr12 12494489 12494786 -131291669 + AluY SINE Alu 2 298 -13 294 208 26 0 chr12 12494852 12494929 -131291526 - L1M4 LINE L1 -2205 3941 3863 4463 242 93 26 chr12 12494970 12496559 -131289896 + L1MDa LINE L1 3872 5566 -974 864 228 146 24 chr12 12496702 12497071 -131289384 + L1M4 LINE L1 4187 4600 -1546 22 56 0 0 chr12 12498122 12498158 -131288297 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr12 12498470 12498528 -131287927 + AT_rich Low_complexity Low_complexity 1 58 0 200 188 0 0 chr12 12498623 12498655 -131287800 + (CA)n Simple_repeat Simple_repeat 1 32 0 1324 56 6 0 chr12 12498821 12498982 -131287473 + L1PA4 LINE L1 5993 6154 -1 1735 202 56 31 chr12 12499085 12499441 -131287014 - MLT1A1 LTR MaLR 0 365 1 1553 194 16 32 chr12 12499484 12499793 -131286662 - AluJo SINE Alu -8 304 1 2365 76 7 3 chr12 12500122 12500424 -131286031 + AluSc SINE Alu 1 303 -6 22 0 0 0 chr12 12504126 12504148 -131282307 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr12 12504298 12504326 -131282129 + AT_rich Low_complexity Low_complexity 1 28 0 2437 56 3 7 chr12 12504661 12504785 -131281670 + AluY SINE Alu 1 124 -187 212 0 36 0 chr12 12504785 12504813 -131281642 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2437 56 3 7 chr12 12504813 12504990 -131281465 + AluY SINE Alu 124 301 -10 974 192 67 10 chr12 12505110 12505128 -131281327 + AluJb SINE Alu 101 117 -195 278 0 54 0 chr12 12505128 12505165 -131281290 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 974 192 67 10 chr12 12505165 12505339 -131281116 + AluJb SINE Alu 117 304 -8 2060 88 19 0 chr12 12506147 12506407 -131280048 + AluSx SINE Alu 37 301 -11 2335 81 3 0 chr12 12507454 12507752 -131278703 - AluSc SINE Alu -10 299 1 360 0 0 0 chr12 12507956 12507996 -131278459 + (CA)n Simple_repeat Simple_repeat 1 40 0 211 295 0 32 chr12 12508476 12508571 -131277884 + T-rich Low_complexity Low_complexity 3 94 0 2286 103 3 0 chr12 12509743 12510035 -131276420 - AluSq SINE Alu -20 293 1 2710 183 14 2 chr12 12510454 12510951 -131275504 - L1MB3 LINE L1 0 6183 5681 240 320 60 77 chr12 12511251 12511604 -131274851 - L2 LINE L2 -412 2902 2556 181 190 35 9 chr12 12511714 12511830 -131274625 + (TA)n Simple_repeat Simple_repeat 2 120 0 1753 164 62 49 chr12 12512064 12512449 -131274006 + MLT1B LTR MaLR 1 390 0 440 146 101 0 chr12 12512453 12512542 -131273913 - MIR SINE MIR -92 170 73 422 200 0 0 chr12 12513065 12513145 -131273310 - MER116 DNA Mariner 0 80 1 381 250 75 25 chr12 12513336 12513456 -131272999 + MER39 LTR ERV1 1 126 -581 * 440 208 10 10 chr12 12513445 12513541 -131272914 + MER39 LTR ERV1 276 371 -336 256 233 33 0 chr12 12513769 12513829 -131272626 + MIR SINE MIR 195 256 -6 190 247 180 45 chr12 12514811 12514900 -131271555 - MIR SINE MIR -66 142 42 263 296 0 14 chr12 12515027 12515098 -131271357 + (TG)n Simple_repeat Simple_repeat 1 70 0 456 77 0 0 chr12 12515425 12515490 -131270965 + (TC)n Simple_repeat Simple_repeat 2 66 0 315 0 0 0 chr12 12515490 12515525 -131270930 + (CA)n Simple_repeat Simple_repeat 1 35 0 244 279 36 27 chr12 12515570 12515681 -131270774 + MER112 DNA MER1_type 6 117 -143 207 0 0 0 chr12 12515830 12515853 -131270602 + (CATAG)n Simple_repeat Simple_repeat 2 24 0 291 350 6 13 chr12 12515855 12516012 -131270443 - MER112 DNA MER1_type -104 156 1 201 317 17 0 chr12 12516297 12516357 -131270098 + MIR SINE MIR 85 145 -117 2501 249 74 8 chr12 12518365 12519642 -131266813 + L1MB3 LINE L1 4299 5668 -574 213 94 0 0 chr12 12519769 12519801 -131266654 + (A)n Simple_repeat Simple_repeat 1 32 0 188 214 107 18 chr12 12524019 12524075 -131262380 + MIR3 SINE MIR 118 178 -30 596 174 0 0 chr12 12524478 12524576 -131261879 + AluJ/FLAM SINE Alu 5 102 -210 2148 110 10 10 chr12 12524962 12525262 -131261193 + AluSc SINE Alu 1 300 -9 417 158 0 13 chr12 12525285 12525361 -131261094 + FLAM_A SINE Alu 47 121 -21 22 0 0 0 chr12 12525363 12525385 -131261070 + AT_rich Low_complexity Low_complexity 1 22 0 1329 185 34 14 chr12 12525388 12525680 -131260775 + L1MB3 LINE L1 5883 6180 -3 604 118 7 37 chr12 12525696 12525832 -131260623 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 806 205 13 8 chr12 12526011 12526207 -131260248 - MLT1J LTR MaLR -287 175 5 204 338 110 15 chr12 12526384 12526520 -131259935 - L2 LINE L2 0 3272 3124 796 212 114 0 chr12 12527577 12527770 -131258685 - MER58C DNA MER1_type 0 215 1 429 319 51 47 chr12 12527871 12528147 -131258308 + L2 LINE L2 2377 2653 -661 857 222 48 39 chr12 12528475 12528806 -131257649 + L1MC4 LINE L1 6449 6982 -1060 203 346 13 97 chr12 12528978 12529206 -131257249 - L3 LINE CR1 -521 1056 848 927 260 56 54 chr12 12529585 12530069 -131256386 + L1MC5 LINE L1 7195 7679 -282 2784 173 6 16 chr12 12530078 12530570 -131255885 + Ricksha DNA DNA 104 590 -2656 2275 119 94 44 chr12 12530566 12530710 -131255745 + Ricksha DNA DNA 2784 2919 -327 * 1553 88 14 0 chr12 12530710 12530925 -131255530 - L1PA11 LINE L1 -1 6173 5956 2275 119 94 44 chr12 12530925 12531215 -131255240 + Ricksha DNA DNA 2919 3240 -6 407 176 5 0 chr12 12531239 12531326 -131255129 - L1 LINE L1 -1321 4825 4736 323 184 66 0 chr12 12531360 12531436 -131255019 + L1ME1 LINE L1 5093 5173 -973 797 169 0 40 chr12 12531501 12531649 -131254806 + FAM SINE Alu 1 142 -43 3704 222 55 3 chr12 12531690 12532600 -131253855 + L1ME1 LINE L1 5191 6139 -27 215 377 110 0 chr12 12533680 12533871 -131252584 + L2 LINE L2 2135 2346 -968 1177 278 59 16 chr12 12534175 12534546 -131251909 + MLT1J LTR MaLR 15 401 -110 235 228 87 22 chr12 12534541 12534633 -131251822 + MLT1J1 LTR MaLR 348 445 -1 * 304 318 65 46 chr12 12534962 12535179 -131251276 + L2 LINE L2 2619 2839 -475 892 200 167 78 chr12 12535760 12536120 -131250335 + MER110A LTR ERV1 21 412 -56 3069 111 125 36 chr12 12536126 12536685 -131249770 - MER4B LTR ERV1 0 610 2 1997 153 18 12 chr12 12536687 12537020 -131249435 + MER1B DNA MER1_type 1 335 -4 264 302 35 0 chr12 12537038 12537124 -131249331 + MER110 LTR ERV1 403 491 0 233 224 0 0 chr12 12537186 12537235 -131249220 + MER5A DNA MER1_type 58 106 -83 1791 103 4 24 chr12 12537320 12537573 -131248882 + AluSg SINE Alu 1 248 -62 335 315 0 9 chr12 12538371 12538479 -131247976 - MIR3 SINE MIR -1 207 101 254 181 239 36 chr12 12538483 12538621 -131247834 - MER34B LTR ERV1 0 565 400 503 217 98 27 chr12 12538641 12538825 -131247630 + L2 LINE L2 3117 3313 0 697 248 6 0 chr12 12538831 12538992 -131247463 + MIR SINE MIR 88 249 -13 1968 138 10 7 chr12 12539000 12539304 -131247151 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr12 12539312 12539333 -131247122 + AT_rich Low_complexity Low_complexity 1 21 0 279 328 101 8 chr12 12539337 12539456 -131246999 + L2 LINE L2 3143 3272 0 241 292 33 42 chr12 12539924 12540044 -131246411 + MIR3 SINE MIR 87 205 -3 1909 199 80 3 chr12 12540722 12541084 -131245371 - MLT1E LTR MaLR -1 592 203 683 220 48 48 chr12 12541253 12541462 -131244993 - MIR SINE MIR -26 236 28 2505 121 69 48 chr12 12542626 12542706 -131243749 - Tigger2 DNA MER2_type 0 2718 2641 1534 150 40 0 chr12 12542706 12542959 -131243496 - L1PB4 LINE L1 -13 6143 5881 2505 121 69 48 chr12 12542959 12543315 -131243140 - Tigger2 DNA MER2_type -77 2641 2273 397 183 28 0 chr12 12543301 12543372 -131243083 - Tigger2 DNA MER2_type -2645 73 1 * 214 195 0 0 chr12 12543532 12543573 -131242882 + T-rich Low_complexity Low_complexity 1 41 0 1890 147 49 3 chr12 12543583 12543930 -131242525 - L1MB3 LINE L1 -7 6176 5814 1747 169 0 4 chr12 12545302 12545581 -131240874 + AluJb SINE Alu 17 294 -18 189 224 17 103 chr12 12546235 12546293 -131240162 + L3 LINE CR1 1512 1564 -13 388 283 20 53 chr12 12546545 12546697 -131239758 + L2 LINE L2 3163 3309 -4 226 274 0 0 chr12 12546748 12546799 -131239656 + GA-rich Low_complexity Low_complexity 2 52 0 2164 109 17 7 chr12 12546814 12547108 -131239347 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 12547121 12547152 -131239303 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 12547238 12547260 -131239195 + (TG)n Simple_repeat Simple_repeat 1 22 0 1135 197 67 47 chr12 12547302 12547601 -131238854 + L1MA9 LINE L1 5793 6097 -215 317 230 122 54 chr12 12548687 12548835 -131237620 - MIR SINE MIR -56 206 49 234 150 0 0 chr12 12551793 12551833 -131234622 + (TCTCC)n Simple_repeat Simple_repeat 4 43 0 752 199 8 0 chr12 12551833 12551964 -131234491 - FLAM_A SINE Alu -1 132 1 1873 173 53 60 chr12 12552038 12552454 -131234001 + MLT2D LTR ERVL 2 414 0 386 301 38 2 chr12 12552844 12553034 -131233421 - MIR SINE MIR -13 249 17 183 344 31 0 chr12 12554839 12554903 -131231552 + MIR SINE MIR 34 99 -109 1587 162 196 9 chr12 12554962 12555308 -131231147 - MLT2D LTR ERVL 0 414 4 693 279 47 39 chr12 12555936 12556190 -131230265 + L2 LINE L2 2882 3137 -176 692 204 52 17 chr12 12556231 12556403 -131230052 + MER5B DNA MER1_type 1 178 0 427 242 50 0 chr12 12556546 12556645 -131229810 + L2 LINE L2 3209 3312 -1 198 0 0 0 chr12 12557118 12557140 -131229315 + (A)n Simple_repeat Simple_repeat 1 22 0 205 345 24 0 chr12 12557734 12557818 -131228637 - MIR3 SINE MIR -24 184 99 517 261 106 14 chr12 12557868 12558077 -131228378 - MIR SINE MIR -33 229 4 2190 61 104 0 chr12 12558546 12558825 -131227630 + AluY SINE Alu 1 308 -3 206 325 0 0 chr12 12559120 12559197 -131227258 + MIR3 SINE MIR 125 201 -7 754 207 5 69 chr12 12560830 12560948 -131225507 - MER45A DNA AcHobo -1403 178 75 1329 149 146 38 chr12 12560948 12561209 -131225246 + AluJb SINE Alu 1 289 -23 754 207 5 69 chr12 12561209 12561278 -131225177 - MER45A DNA AcHobo -1506 75 3 353 277 71 115 chr12 12562776 12562925 -131223530 + MIR SINE MIR 15 150 -112 5185 129 56 16 chr12 12562925 12564178 -131222277 + L1PA16 LINE L1 4873 6166 0 353 277 71 115 chr12 12564178 12564281 -131222174 + MIR SINE MIR 150 256 -6 651 200 133 0 chr12 12565305 12565470 -131220985 - MER5A DNA MER1_type 0 189 3 752 247 54 31 chr12 12565491 12565714 -131220741 + MIR SINE MIR 28 255 -7 313 264 11 0 chr12 12565748 12565835 -131220620 - MIR SINE MIR -1 261 174 180 352 0 0 chr12 12566042 12566096 -131220359 + L2 LINE L2 3215 3268 -4 201 327 10 59 chr12 12566955 12567056 -131219399 - L2 LINE L2 -23 3290 3195 2758 123 14 7 chr12 12568024 12568453 -131218002 + MSTB1 LTR MaLR 1 432 0 1826 152 28 0 chr12 12568946 12569229 -131217226 + AluJo SINE Alu 1 291 -21 383 270 86 26 chr12 12569348 12569500 -131216955 - MIR SINE MIR -71 191 31 2321 100 0 3 chr12 12570261 12570571 -131215884 - AluSx SINE Alu -3 309 1 2108 133 21 6 chr12 12570745 12571076 -131215379 + MER1B DNA MER1_type 1 336 -1 565 209 27 9 chr12 12574347 12574457 -131211998 - MER81 DNA DNA 0 114 3 272 250 148 0 chr12 12574781 12574869 -131211586 + MIR3 SINE MIR 84 184 -24 213 309 106 32 chr12 12575402 12575525 -131210930 + MIR SINE MIR 29 160 -102 2488 85 0 0 chr12 12575576 12575883 -131210572 + AluY SINE Alu 1 307 -4 1288 152 0 0 chr12 12576777 12576961 -131209494 + AluJo SINE Alu 3 186 -126 246 128 0 0 chr12 12576967 12577006 -131209449 + (A)n Simple_repeat Simple_repeat 1 39 0 711 231 67 29 chr12 12577081 12577319 -131209136 - MIR SINE MIR -14 248 2 234 0 0 0 chr12 12577537 12577563 -131208892 + (T)n Simple_repeat Simple_repeat 1 26 0 271 303 112 39 chr12 12577962 12578035 -131208420 + MIR SINE MIR 10 76 -186 189 0 0 0 chr12 12578035 12578056 -131208399 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2342 81 7 3 chr12 12578056 12578351 -131208104 - AluSq SINE Alu -17 296 1 271 303 112 39 chr12 12578351 12578510 -131207945 + MIR SINE MIR 75 256 -6 251 327 39 29 chr12 12578529 12578633 -131207822 + L2 LINE L2 3132 3236 -36 322 297 83 35 chr12 12578674 12578819 -131207636 - L2 LINE L2 -2 3270 3119 393 294 46 0 chr12 12579349 12579458 -131206997 - L2 LINE L2 0 3313 3200 437 140 8 0 chr12 12580625 12580746 -131205709 + CT-rich Low_complexity Low_complexity 1 121 0 1768 131 47 24 chr12 12580748 12581046 -131205409 - AluJb SINE Alu -2 310 6 250 209 76 57 chr12 12581809 12581914 -131204541 + Charlie5 DNA MER1_type 3 109 -2503 1740 186 41 3 chr12 12581923 12582288 -131204167 + Charlie5 DNA MER1_type 2244 2622 0 21 0 0 0 chr12 12583140 12583161 -131203294 + AT_rich Low_complexity Low_complexity 1 21 0 462 208 146 14 chr12 12584296 12584440 -131202015 - MER5B DNA MER1_type 0 178 16 2219 135 0 3 chr12 12585238 12585550 -131200905 - AluJb SINE Alu -1 311 1 251 316 198 24 chr12 12587662 12588001 -131198454 - L3 LINE CR1 -1 1576 1179 273 247 55 0 chr12 12588800 12588873 -131197582 + MIR SINE MIR 120 196 -66 180 0 0 0 chr12 12589233 12589253 -131197202 + (T)n Simple_repeat Simple_repeat 1 20 0 510 17 0 0 chr12 12591725 12591784 -131194671 + (CA)n Simple_repeat Simple_repeat 1 59 0 234 62 0 0 chr12 12593226 12593258 -131193197 + (T)n Simple_repeat Simple_repeat 1 32 0 510 258 0 39 chr12 12596610 12596765 -131189690 - L2 LINE L2 0 3313 3165 210 331 181 19 chr12 12596928 12597088 -131189367 + MIR3 SINE MIR 16 201 -7 654 287 44 28 chr12 12597236 12597487 -131188968 - MIR SINE MIR -1 261 7 204 40 0 0 chr12 12597517 12597542 -131188913 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 12599900 12599922 -131186533 + AT_rich Low_complexity Low_complexity 1 22 0 249 296 82 7 chr12 12599933 12600068 -131186387 - MIR SINE MIR -52 210 66 22 35 0 0 chr12 12601593 12601622 -131184833 + AT_rich Low_complexity Low_complexity 1 29 0 381 223 0 0 chr12 12603302 12603396 -131183059 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 273 274 105 0 chr12 12603449 12603544 -131182911 - MIR SINE MIR -139 123 19 277 363 44 19 chr12 12604103 12604263 -131182192 + MIR3 SINE MIR 21 184 -24 529 249 113 0 chr12 12607207 12607384 -131179071 - MIR SINE MIR 0 262 66 2271 91 0 0 chr12 12608015 12608300 -131178155 + AluY SINE Alu 9 293 -18 1781 170 0 35 chr12 12608919 12609113 -131177342 - AluJo SINE Alu -2 310 130 3418 122 13 15 chr12 12609113 12609661 -131176794 - L1PA13 LINE L1 -8 6155 5609 1781 170 0 35 chr12 12609661 12609777 -131176678 - AluJo SINE Alu -182 130 11 1392 209 61 0 chr12 12609788 12610065 -131176390 - AluJo SINE Alu -18 294 1 210 277 60 0 chr12 12610142 12610225 -131176230 - L2 LINE L2 0 3313 3226 339 335 197 13 chr12 12610257 12610496 -131175959 + L3 LINE CR1 1220 1502 -75 1559 175 39 21 chr12 12610608 12610945 -131175510 + MER61A LTR ERV1 1 343 0 1763 157 7 4 chr12 12611014 12611295 -131175160 + AluJb SINE Alu 1 282 -30 33 0 0 0 chr12 12611300 12611333 -131175122 + AT_rich Low_complexity Low_complexity 1 33 0 1731 175 4 4 chr12 12612134 12612414 -131174041 + AluJo SINE Alu 3 282 -30 240 86 0 0 chr12 12612417 12612452 -131174003 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 230 335 50 37 chr12 12612454 12612615 -131173840 + MIR SINE MIR 20 182 -80 326 235 49 20 chr12 12613000 12613102 -131173353 + MIR SINE MIR 98 202 -60 203 86 0 29 chr12 12613688 12613723 -131172732 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 185 314 23 35 chr12 12616652 12616738 -131169717 - L2 LINE L2 -1093 2221 2137 34 65 0 0 chr12 12616902 12616964 -131169491 + AT_rich Low_complexity Low_complexity 1 62 0 830 206 29 29 chr12 12617037 12617275 -131169180 - L1MDa LINE L1 -3981 2559 2322 31 26 0 0 chr12 12617405 12617443 -131169012 + AT_rich Low_complexity Low_complexity 1 38 0 289 216 27 0 chr12 12617443 12617517 -131168938 + MER3 DNA MER1_type 129 204 -5 247 234 0 0 chr12 12617482 12617529 -131168926 - MER3 DNA MER1_type -122 87 41 * 231 325 76 19 chr12 12617722 12617879 -131168576 - L2 LINE L2 -998 2316 2151 392 304 9 0 chr12 12617956 12618071 -131168384 + L2 LINE L2 3156 3271 -1 * 464 289 44 13 chr12 12618065 12618293 -131168162 - L2 LINE L2 -1230 2084 1850 749 285 110 53 chr12 12618744 12619301 -131167154 + HAL1 LINE L1 419 1030 -1477 2352 85 0 3 chr12 12619301 12619595 -131166860 - AluSc SINE Alu -16 293 1 749 285 110 53 chr12 12619595 12619774 -131166681 + HAL1 LINE L1 1030 1197 -1310 333 188 104 10 chr12 12619785 12619881 -131166574 + HAL1 LINE L1 1243 1347 -1160 277 209 33 55 chr12 12619892 12619983 -131166472 - Zaphod DNA AcHobo 0 4031 3943 956 287 93 28 chr12 12620435 12620906 -131165549 + HAL1 LINE L1 1347 1848 -659 333 230 0 23 chr12 12620952 12621039 -131165416 + HAL1 LINE L1 2012 2096 -411 232 282 167 0 chr12 12621370 12621448 -131165007 - MLT1F LTR MaLR -300 267 177 521 243 39 72 chr12 12621481 12621662 -131164793 - MLT1F LTR MaLR -341 201 27 205 301 52 81 chr12 12621804 12621940 -131164515 - L2 LINE L2 -385 2929 2798 712 279 117 28 chr12 12621982 12622419 -131164036 - L2 LINE L2 -1443 1871 1396 723 146 0 0 chr12 12622569 12622679 -131163776 - MSTA LTR MaLR 0 428 319 623 160 0 0 chr12 12622683 12622777 -131163678 - AluS SINE Alu -217 95 2 6024 81 1 13 chr12 12622778 12623607 -131162848 + L1PA14 LINE L1 5343 6161 0 912 162 59 72 chr12 12624164 12624386 -131162069 - MER20 DNA MER1_type 0 219 1 2050 133 7 10 chr12 12624533 12624834 -131161621 - AluSx SINE Alu -12 300 1 3127 166 49 53 chr12 12624836 12625584 -131160871 - L1MB2 LINE L1 -346 5825 5106 203 162 0 0 chr12 12625710 12625747 -131160708 + T-rich Low_complexity Low_complexity 4 40 0 936 259 79 20 chr12 12625779 12626173 -131160282 - L1ME3A LINE L1 -209 5961 5545 7909 36 0 2 chr12 12626188 12627439 -131159016 - L1PA4 LINE L1 -3 6152 4900 36948 62 6 1 chr12 12627444 12632118 -131154337 - L1PA4 LINE L1 -1416 4730 31 1075 209 19 12 chr12 12632118 12632377 -131154078 + HSMAR2 DNA Mariner 1040 1300 -2 681 190 8 0 chr12 12632896 12633017 -131153438 - MSTA LTR MaLR -304 122 1 8718 193 31 19 chr12 12633017 12634646 -131151809 - MSTA-int LTR MaLR 0 1651 3 2219 180 38 29 chr12 12634795 12635143 -131151312 + HSMAR2 DNA Mariner 669 1023 -279 5979 97 6 68 chr12 12635143 12636024 -131150431 + LTR12 LTR ERV1 1 826 0 2219 180 38 29 chr12 12636024 12636126 -131150329 + HSMAR2 DNA Mariner 1023 1123 -179 417 299 22 7 chr12 12636128 12636265 -131150190 + HERVL40 LTR ERVL 109 247 -5283 240 86 0 0 chr12 12636843 12636878 -131149577 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1403 235 7 17 chr12 12636880 12637169 -131149286 - AluJo SINE Alu -14 288 3 300 276 13 0 chr12 12637534 12637610 -131148845 + HERVL40 LTR ERVL 2051 2127 -3403 2627 232 47 38 chr12 12637983 12638705 -131147750 + HSMAR2 DNA Mariner 205 993 -309 1996 125 11 3 chr12 12638705 12638992 -131147463 + L1PB1 LINE L1 5860 6148 -3 2627 232 47 38 chr12 12638992 12639305 -131147150 + HSMAR2 DNA Mariner 993 1302 0 26 30 0 0 chr12 12639734 12639767 -131146688 + AT_rich Low_complexity Low_complexity 1 33 0 999 231 41 19 chr12 12640075 12640188 -131146267 + AluJo SINE Alu 16 125 -187 180 0 0 0 chr12 12640188 12640208 -131146247 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 999 231 41 19 chr12 12640208 12640363 -131146092 + AluJo SINE Alu 125 290 -22 822 240 11 107 chr12 12640788 12641154 -131145301 + MLT1B LTR MaLR 47 377 -13 254 222 14 28 chr12 12641154 12641226 -131145229 - L2 LINE L2 -910 2404 2334 1702 200 0 3 chr12 12643189 12643479 -131142976 - AluJb SINE Alu -23 289 1 1237 231 155 29 chr12 12644505 12644950 -131141505 - MLT1D LTR MaLR -4 501 1 304 277 83 94 chr12 12645224 12645322 -131141133 + L1M2 LINE L1 897 995 -5854 189 94 0 0 chr12 12645322 12645354 -131141101 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 304 277 83 94 chr12 12645354 12645627 -131140828 + L1M2 LINE L1 995 1264 -5585 26 0 0 0 chr12 12645814 12645840 -131140615 + AT_rich Low_complexity Low_complexity 1 26 0 347 310 35 105 chr12 12646233 12646433 -131140022 + HAL1 LINE L1 19 204 -2303 189 94 0 0 chr12 12646659 12646691 -131139764 + (TC)n Simple_repeat Simple_repeat 1 32 0 590 248 129 0 chr12 12647037 12647239 -131139216 - MLT1G1 LTR MaLR -311 284 57 203 357 32 45 chr12 12650644 12650798 -131135657 - MER5A DNA MER1_type -5 184 33 331 296 16 0 chr12 12651342 12651482 -131134973 - L1M1 LINE L1 -316 5805 5676 1916 119 17 20 chr12 12652038 12652332 -131134123 - AluSg SINE Alu -17 293 1 256 287 238 0 chr12 12652372 12652473 -131133982 - MER5A DNA MER1_type -14 175 51 1002 199 139 96 chr12 12652528 12652631 -131133824 - MER110A LTR ERV1 0 491 394 2065 155 18 21 chr12 12652631 12652966 -131133489 - MER1B DNA MER1_type -3 334 1 3244 107 127 38 chr12 12652968 12653527 -131132928 + MER4B LTR ERV1 2 610 0 1002 199 139 96 chr12 12653527 12653904 -131132551 - MER110A LTR ERV1 -97 394 9 287 302 85 53 chr12 12654474 12654663 -131131792 - L2 LINE L2 -475 2839 2645 227 263 26 13 chr12 12654671 12654747 -131131708 - MLT1K LTR MaLR -3 585 509 235 228 87 22 chr12 12655018 12655110 -131131345 - MLT1J1 LTR MaLR -1 445 348 * 1176 278 59 16 chr12 12655105 12655476 -131130979 - MLT1J LTR MaLR -110 401 15 216 359 177 17 chr12 12655564 12655971 -131130484 - L2 LINE L2 -708 2606 2135 549 311 25 20 chr12 12706964 12707160 -131079295 + MIR3 SINE MIR 2 198 -10 660 274 72 27 chr12 12707766 12707989 -131078466 - MIR SINE MIR -14 248 16 184 316 116 0 chr12 12708530 12708625 -131077830 - L2 LINE L2 -12 3301 3196 1031 144 0 13 chr12 12710228 12710381 -131076074 + FRAM SINE Alu 14 164 -12 279 263 162 10 chr12 12711313 12711412 -131075043 + MIR SINE MIR 16 129 -79 2378 95 3 0 chr12 12712374 12712679 -131073776 + AluY SINE Alu 1 306 -5 36 0 0 0 chr12 12712770 12712806 -131073649 + AT_rich Low_complexity Low_complexity 1 36 0 237 294 98 0 chr12 12714812 12714904 -131071551 - L2 LINE L2 -4 3268 3168 458 264 24 32 chr12 12714950 12715075 -131071380 - L2 LINE L2 -9 3263 3140 827 173 0 0 chr12 12715874 12716007 -131070448 - FLAM_C SINE Alu 0 133 1 296 330 18 0 chr12 12716181 12716290 -131070165 + L1ME4a LINE L1 5554 5664 -457 287 265 109 0 chr12 12716352 12716419 -131070036 + L1ME4a LINE L1 5765 5823 -298 2528 62 0 7 chr12 12716419 12716727 -131069728 + AluY SINE Alu 1 306 -5 287 265 109 0 chr12 12716727 12716806 -131069649 + L1ME4a LINE L1 5823 5927 -194 243 246 68 25 chr12 12716813 12716931 -131069524 + L1ME4a LINE L1 5961 6083 -38 235 333 103 16 chr12 12717377 12717503 -131068952 + L2 LINE L2 3136 3272 0 407 335 29 0 chr12 12717567 12717737 -131068718 + MIR SINE MIR 76 250 -12 198 253 179 21 chr12 12717894 12717989 -131068466 + L2 LINE L2 3158 3267 -5 191 250 0 0 chr12 12719557 12719601 -131066854 + L2 LINE L2 3268 3311 -2 242 222 0 100 chr12 12719874 12719964 -131066491 - LTR67 LTR ERVL -13 544 464 461 347 89 8 chr12 12720655 12720903 -131065552 - L3 LINE CR1 -12 1565 1298 196 259 74 19 chr12 12720928 12720982 -131065473 + MIR SINE MIR 21 77 -185 541 291 171 27 chr12 12721117 12721409 -131065046 - L3 LINE CR1 -668 909 576 586 315 167 45 chr12 12722589 12723278 -131063177 - L2 LINE L2 -1116 2198 1426 266 44 0 44 chr12 12723291 12723336 -131063119 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 297 250 15 0 chr12 12723544 12723612 -131062843 - L2 LINE L2 -3 3269 3201 2117 70 9 98 chr12 12723612 12723939 -131062516 + AluSx SINE Alu 1 298 -14 696 268 80 77 chr12 12723957 12724172 -131062283 - L2 LINE L2 -312 3001 2785 1578 167 37 40 chr12 12724172 12724471 -131061984 - AluJo SINE Alu -14 298 1 696 268 80 77 chr12 12724471 12724679 -131061776 - L2 LINE L2 -528 2785 2579 * 1231 239 115 19 chr12 12724674 12725038 -131061417 + L2 LINE L2 2911 3309 -4 224 294 199 0 chr12 12726061 12726207 -131060248 + MIR3 SINE MIR 30 204 -4 208 185 0 111 chr12 12726440 12726494 -131059961 - MIR3 SINE MIR -17 191 144 1158 191 71 14 chr12 12726702 12727019 -131059436 + MER33 DNA MER1_type 1 324 0 319 279 23 0 chr12 12727063 12727149 -131059306 - MIR SINE MIR -116 146 59 3436 230 200 68 chr12 12728040 12728485 -131057970 - HAL1 LINE L1 -31 2476 2091 2074 99 0 4 chr12 12728485 12728786 -131057669 - AluSg SINE Alu 0 311 12 3436 230 200 68 chr12 12728786 12730146 -131056309 - HAL1 LINE L1 -416 2091 338 2205 103 13 10 chr12 12730146 12730446 -131056009 - AluSx SINE Alu -11 301 1 3436 230 200 68 chr12 12730446 12730794 -131055661 - HAL1 LINE L1 -2169 338 37 210 245 0 0 chr12 12731283 12731336 -131055119 + MER5B DNA MER1_type 2 54 -124 2442 88 0 0 chr12 12731875 12732170 -131054285 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr12 12732538 12732559 -131053896 + AT_rich Low_complexity Low_complexity 1 21 0 575 229 28 0 chr12 12732632 12732776 -131053679 - MIR SINE MIR 0 262 115 200 226 38 113 chr12 12733007 12733113 -131053342 - MIR SINE MIR -140 122 25 22 0 0 0 chr12 12734653 12734675 -131051780 + AT_rich Low_complexity Low_complexity 1 22 0 619 260 62 10 chr12 12735209 12735401 -131051054 + MIR SINE MIR 53 254 -8 288 290 161 0 chr12 12735874 12735967 -131050488 - MIR SINE MIR -71 137 30 1122 162 0 57 chr12 12736228 12736456 -131049999 - AluJo SINE Alu 0 312 98 297 417 40 0 chr12 12737504 12737655 -131048800 - L2 LINE L2 -9 3263 3107 1020 178 51 14 chr12 12739231 12739445 -131047010 - AluJo SINE Alu -4 308 87 2105 156 92 21 chr12 12739742 12740165 -131046290 - L1MA8 LINE L1 -5 6286 5834 623 136 7 116 chr12 12740254 12740401 -131046054 + FLAM_A SINE Alu 1 131 -2 203 178 22 0 chr12 12743375 12743420 -131043035 + (CAT)n Simple_repeat Simple_repeat 2 47 0 412 273 83 0 chr12 12743555 12743676 -131042779 - L2 LINE L2 -4 3309 3179 924 296 25 15 chr12 12743712 12744189 -131042266 + L2 LINE L2 2670 3149 -164 738 245 53 67 chr12 12744621 12744903 -131041552 - HAL1 LINE L1 -2193 314 37 241 370 9 0 chr12 12745012 12745120 -131041335 - L2 LINE L2 -245 3027 2919 1468 167 84 57 chr12 12747829 12748164 -131038291 - MER2 DNA MER2_type 0 344 1 1950 145 0 7 chr12 12748348 12748645 -131037810 + AluJb SINE Alu 1 295 -17 240 342 0 26 chr12 12748695 12748850 -131037605 + GA-rich Low_complexity Low_complexity 3 153 0 2307 117 0 0 chr12 12749280 12749587 -131036868 - AluY SINE Alu -4 307 1 334 333 48 12 chr12 12750268 12750436 -131036019 - L3 LINE CR1 -16 1561 1388 432 249 193 5 chr12 12751154 12751351 -131035104 - MIR SINE MIR -6 256 23 195 129 0 0 chr12 12753050 12753081 -131033374 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 252 290 69 85 chr12 12754623 12754812 -131031643 - MIR SINE MIR -55 207 22 251 352 34 34 chr12 12754951 12755127 -131031328 + MIR SINE MIR 37 212 -50 192 308 115 0 chr12 12755531 12755635 -131030820 - L2 LINE L2 -347 2966 2851 2269 86 7 7 chr12 12755711 12756013 -131030442 - AluY SINE Alu -9 302 1 488 313 85 22 chr12 12756503 12756727 -131029728 + MIR SINE MIR 8 245 -17 2039 124 0 44 chr12 12757703 12758018 -131028437 + AluSx SINE Alu 1 301 -11 957 334 92 15 chr12 12758869 12759459 -131026996 + L2 LINE L2 2175 2809 -505 956 259 19 8 chr12 12759469 12759728 -131026727 - MIR SINE MIR 0 262 1 1926 250 65 41 chr12 12759750 12760549 -131025906 - L2 LINE L2 -2 3311 2459 2352 97 0 13 chr12 12760549 12760860 -131025595 + AluY SINE Alu 1 307 -4 1926 250 65 41 chr12 12760860 12761022 -131025433 - L2 LINE L2 -854 2459 2302 1570 148 23 66 chr12 12761023 12761327 -131025128 + AluJo SINE Alu 1 291 -21 2064 129 3 3 chr12 12762930 12763233 -131023222 - AluSg SINE Alu -7 303 1 2324 91 24 0 chr12 12763965 12764262 -131022193 + AluSx SINE Alu 1 304 -8 634 211 114 57 chr12 12764936 12765163 -131021292 - MLT1D LTR MaLR -258 247 8 180 216 0 0 chr12 12765170 12765207 -131021248 - MIR SINE MIR -173 89 53 1848 169 13 7 chr12 12765302 12765604 -131020851 - AluJo SINE Alu -8 304 1 378 0 0 0 chr12 12766539 12766581 -131019874 + (CA)n Simple_repeat Simple_repeat 1 42 0 695 180 29 35 chr12 12768282 12768454 -131018001 - MER96B DNA MER1_type? -246 171 1 598 285 72 8 chr12 12768740 12768975 -131017480 - MIR SINE MIR -8 254 5 205 200 44 0 chr12 12769868 12769913 -131016542 + MIR SINE MIR 85 131 -77 294 98 0 0 chr12 12770658 12770709 -131015746 + (TG)n Simple_repeat Simple_repeat 2 52 0 2151 120 3 0 chr12 12770709 12770993 -131015462 - AluSx SINE Alu -27 285 1 478 270 183 18 chr12 12771176 12771450 -131015005 - L1ME4a LINE L1 -265 5856 5538 590 371 62 14 chr12 12772177 12772597 -131013858 + L3 LINE CR1 427 866 -711 376 225 0 0 chr12 12772807 12772887 -131013568 - MIR SINE MIR -113 149 70 867 262 43 0 chr12 12773018 12773228 -131013227 + MIR SINE MIR 23 241 -21 243 157 0 19 chr12 12773340 12773394 -131013061 + MIR SINE MIR 102 153 -67 231 330 11 14 chr12 12773446 12773654 -131012801 + L3 LINE CR1 993 1254 -323 205 245 0 19 chr12 12773987 12774040 -131012415 + MIR SINE MIR 161 212 -50 537 249 30 0 chr12 12774311 12774470 -131011985 - MIR3 SINE MIR -30 178 12 892 176 96 59 chr12 12775291 12775530 -131010925 + MIR SINE MIR 3 250 -12 2045 184 73 14 chr12 12777286 12777780 -131008675 - Charlie1b DNA MER1_type 0 523 1 1977 162 0 0 chr12 12779067 12779364 -131007091 + AluJb SINE Alu 1 297 -15 2851 13 0 0 chr12 12781269 12781577 -131004878 + AluYa5 SINE Alu 1 308 -3 300 271 33 25 chr12 12781934 12782056 -131004399 + L2 LINE L2 3185 3307 -6 219 350 67 22 chr12 12782081 12782261 -131004194 - L2 LINE L2 -527 2787 2600 224 327 20 0 chr12 12782868 12782969 -131003486 + MIR3 SINE MIR 87 189 -19 2357 99 3 0 chr12 12784278 12784581 -131001874 - AluSc SINE Alu -5 304 1 2344 101 0 3 chr12 12785163 12785471 -131000984 + AluSg SINE Alu 1 307 -3 253 336 29 5 chr12 12785972 12786181 -131000274 + L1MC/D LINE L1 5586 5802 -344 1222 71 0 0 chr12 12786318 12786473 -130999982 - AluY SINE Alu -2 309 155 704 303 208 15 chr12 12786503 12787292 -130999163 - L2 LINE L2 -660 2654 1714 455 310 29 73 chr12 12787581 12787826 -130998629 - MIR SINE MIR -9 253 20 344 182 234 0 chr12 12788154 12788231 -130998224 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12788511 12788539 -130997916 + AT_rich Low_complexity Low_complexity 1 28 0 1889 146 7 4 chr12 12788564 12788867 -130997588 - AluJb SINE Alu 0 304 1 464 321 81 14 chr12 12788980 12789201 -130997254 + L3 LINE CR1 1230 1465 -112 219 69 0 0 chr12 12790002 12790031 -130996424 + (TGG)n Simple_repeat Simple_repeat 3 31 0 495 345 0 0 chr12 12790037 12790208 -130996247 - MIR SINE MIR -3 259 89 251 284 204 25 chr12 12790390 12790552 -130995903 - MIR SINE MIR -30 232 42 1936 158 0 0 chr12 12792360 12792651 -130993804 + AluJb SINE Alu 1 291 -21 200 267 0 0 chr12 12793117 12793162 -130993293 - L2 LINE L2 -5 3308 3264 3673 109 11 9 chr12 12793340 12793864 -130992591 - MER1A DNA MER1_type 0 527 3 2395 54 0 34 chr12 12794469 12794765 -130991690 + AluY SINE Alu 1 286 -25 285 146 0 0 chr12 12796406 12796454 -130990001 + (TAGG)n Simple_repeat Simple_repeat 1 48 0 311 259 0 0 chr12 12797002 12797087 -130989368 + MER94 DNA DNA 1 85 -49 334 269 94 20 chr12 12797185 12797334 -130989121 + MIR3 SINE MIR 33 192 -16 32 0 0 0 chr12 12797842 12797874 -130988581 + AT_rich Low_complexity Low_complexity 1 32 0 2702 55 0 0 chr12 12798579 12798890 -130987565 - AluY SINE Alu 0 311 1 824 253 66 12 chr12 12798912 12799153 -130987302 - MIR SINE MIR 0 262 9 503 276 69 0 chr12 12799835 12799980 -130986475 + MIR SINE MIR 39 193 -69 405 109 0 0 chr12 12799980 12800044 -130986411 + Alu SINE Alu 248 311 0 183 210 210 0 chr12 12800044 12800106 -130986349 + MIR SINE MIR 187 261 -1 504 110 99 0 chr12 12800163 12800254 -130986201 - L1MB2 LINE L1 -2 6169 6070 2474 128 73 14 chr12 12801831 12802270 -130984185 - MLT1C LTR MaLR 0 467 3 1098 213 84 60 chr12 12804229 12804418 -130982037 - L1MC5 LINE L1 -51 7910 7727 2610 57 0 0 chr12 12804418 12804718 -130981737 + AluY SINE Alu 1 300 -11 1098 213 84 60 chr12 12804718 12804946 -130981509 - L1MC5 LINE L1 -234 7727 7483 25 0 0 0 chr12 12805025 12805050 -130981405 + AT_rich Low_complexity Low_complexity 1 25 0 217 134 0 82 chr12 12805059 12805193 -130981262 + (TA)n Simple_repeat Simple_repeat 2 124 0 1358 255 89 57 chr12 12805203 12806014 -130980441 - L1MEc LINE L1 -4901 1495 659 440 308 71 16 chr12 12806486 12806668 -130979787 - L1MEc LINE L1 -5860 345 154 492 285 30 30 chr12 12806679 12806879 -130979576 - L1MC4a LINE L1 -1867 5941 5742 535 274 51 13 chr12 12807695 12807852 -130978603 + MIR SINE MIR 19 181 -81 1250 136 0 0 chr12 12807874 12808050 -130978405 - AluSg/x SINE Alu 0 312 137 207 228 0 18 chr12 12808094 12808151 -130978304 + (TTA)n Simple_repeat Simple_repeat 1 56 0 2500 70 0 0 chr12 12808403 12808705 -130977750 + AluY SINE Alu 1 302 -9 316 339 15 0 chr12 12810122 12810252 -130976203 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12810315 12810365 -130976090 - MIR SINE MIR -7 255 203 2293 72 31 7 chr12 12810647 12810939 -130975516 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12811115 12811300 -130975155 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12811638 12811687 -130974768 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12811944 12812245 -130974210 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12812639 12812691 -130973764 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12813318 12813469 -130972986 - L2 LINE L2 -213 3059 2903 2193 124 0 3 chr12 12813543 12813841 -130972614 + AluSx SINE Alu 1 297 -15 231 174 0 0 chr12 12813842 12813888 -130972567 + LTR66 LTR ERVL 394 439 -171 377 307 0 11 chr12 12813888 12814064 -130972391 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 304 315 0 0 chr12 12814075 12814164 -130972291 + L1MC4 LINE L1 6615 6703 -1339 2076 17 12 0 chr12 12814242 12814483 -130971972 + L1PA4 LINE L1 5912 6155 0 1046 212 9 28 chr12 12815186 12815403 -130971052 + MER58A DNA MER1_type 12 224 0 248 203 62 16 chr12 12815709 12815773 -130970682 - L2 LINE L2 0 3313 3247 22 0 0 0 chr12 12816729 12816751 -130969704 + AT_rich Low_complexity Low_complexity 1 22 0 193 284 74 0 chr12 12817194 12817289 -130969166 + MIR SINE MIR 105 206 -56 875 171 82 0 chr12 12818316 12818486 -130967969 - MER20 DNA MER1_type 0 219 36 237 65 0 0 chr12 12819459 12819490 -130966965 + (A)n Simple_repeat Simple_repeat 1 31 0 1538 188 4 22 chr12 12820396 12820672 -130965783 - AluJo SINE Alu -41 271 1 1539 191 64 9 chr12 12820811 12821156 -130965299 - MLT1A1 LTR MaLR -1 364 1 477 326 62 4 chr12 12821829 12822056 -130964399 + MIR SINE MIR 23 262 0 306 330 31 0 chr12 12822091 12822188 -130964267 - MIR SINE MIR -84 178 79 211 171 0 24 chr12 12822370 12822411 -130964044 + MIR SINE MIR 85 124 -84 2445 96 0 3 chr12 12822712 12823025 -130963430 - AluSx SINE Alu 0 312 1 245 258 32 0 chr12 12823702 12823764 -130962691 + MIR3 SINE MIR 101 164 -44 841 239 35 31 chr12 12825826 12826081 -130960374 - MER112 DNA MER1_type 0 256 1 369 350 9 22 chr12 12826643 12826866 -130959589 + L2 LINE L2 2137 2356 -958 2586 75 0 0 chr12 12826897 12827204 -130959251 + AluSc SINE Alu 1 307 -2 995 104 6 49 chr12 12827807 12827823 -130958632 - AluJo/FRAM SINE Alu 0 312 297 1843 170 3 25 chr12 12827823 12828140 -130958315 - AluSx SINE Alu -2 310 1 995 104 6 49 chr12 12828140 12828286 -130958169 - AluJo/FRAM SINE Alu -15 297 157 398 117 0 17 chr12 12828302 12828362 -130958093 - MER46B DNA MER2_type 0 236 178 189 0 0 0 chr12 12829562 12829583 -130956872 + (T)n Simple_repeat Simple_repeat 1 21 0 1682 198 10 10 chr12 12829867 12830165 -130956290 - AluJo SINE Alu -14 298 1 216 0 0 0 chr12 12830796 12830820 -130955635 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 25 31 0 0 chr12 12830886 12830918 -130955537 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 12831653 12831677 -130954778 + (T)n Simple_repeat Simple_repeat 1 24 0 1408 156 27 136 chr12 12832975 12833380 -130953075 + MER46B DNA MER2_type 1 236 0 264 327 30 10 chr12 12834150 12834251 -130952204 - MIR SINE MIR -57 151 49 207 69 0 0 chr12 12834711 12834740 -130951715 + (A)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 12834806 12834833 -130951622 + AT_rich Low_complexity Low_complexity 1 27 0 753 174 49 0 chr12 12835689 12835833 -130950622 + MER5A DNA MER1_type 39 189 0 213 188 58 29 chr12 12836212 12836281 -130950174 + L3 LINE CR1 1435 1505 -72 316 195 12 37 chr12 12836427 12836446 -130950009 - MER5A DNA MER1_type -96 93 75 2524 77 3 0 chr12 12836446 12836756 -130949699 - AluY SINE Alu 0 311 1 316 195 12 37 chr12 12836756 12836818 -130949637 - MER5A DNA MER1_type -114 75 14 188 301 159 18 chr12 12837665 12837778 -130948677 + L2 LINE L2 3184 3312 -1 2262 156 63 20 chr12 12837782 12838408 -130948047 + L1ME1 LINE L1 5054 5700 -466 1913 149 10 10 chr12 12838408 12838704 -130947751 - AluJo SINE Alu -16 296 1 2262 156 63 20 chr12 12838704 12838725 -130947730 + L1ME1 LINE L1 5700 5719 -447 1690 170 21 3 chr12 12838726 12839008 -130947447 + AluJb SINE Alu 17 303 -9 1213 97 6 0 chr12 12839009 12839174 -130947281 + AluSg/x SINE Alu 135 300 -10 708 191 0 7 chr12 12839177 12839313 -130947142 + L1ME1 LINE L1 5730 5864 -302 904 259 23 0 chr12 12839314 12839577 -130946878 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12840301 12840598 -130945857 + AluSg SINE Alu 1 298 -12 726 233 5 34 chr12 12841350 12841556 -130944899 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12841746 12841807 -130944648 - MIR SINE MIR -56 152 91 2319 107 0 0 chr12 12842299 12842598 -130943857 - AluSq SINE Alu -14 299 1 261 291 13 13 chr12 12844141 12844220 -130942235 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12844499 12844813 -130941642 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12844952 12845096 -130941359 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12846012 12846128 -130940327 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12846898 12847016 -130939439 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12847033 12847424 -130939031 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12847735 12847898 -130938557 - L2 LINE L2 -4 3309 3160 1824 204 0 3 chr12 12847898 12848246 -130938209 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12848246 12848498 -130937957 - L2 LINE L2 -153 3160 2863 45221 37 1 3 chr12 12848579 12854746 -130931709 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12855944 12856237 -130930218 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12856496 12856796 -130929659 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12856801 12856822 -130929633 + AT_rich Low_complexity Low_complexity 1 21 0 2508 68 3 0 chr12 12858256 12858564 -130927891 + AluY SINE Alu 1 309 -2 1268 114 0 0 chr12 12858565 12858731 -130927724 + AluSg/x SINE Alu 130 295 -17 495 140 30 10 chr12 12859141 12859241 -130927214 - L1MC1 LINE L1 -6 6327 6226 1979 106 4 29 chr12 12859241 12859515 -130926940 - AluSc SINE Alu -42 267 1 1024 61 15 0 chr12 12859540 12859671 -130926784 - AluY SINE Alu -3 308 176 273 261 17 61 chr12 12859672 12859787 -130926668 - MIR SINE MIR -112 150 41 21 0 0 0 chr12 12859882 12859903 -130926552 + AT_rich Low_complexity Low_complexity 1 21 0 340 219 67 62 chr12 12861063 12861241 -130925214 - L2 LINE L2 -1459 1855 1677 197 33 33 0 chr12 12861524 12861554 -130924901 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 192 283 0 0 chr12 12862494 12862547 -130923908 + L3 LINE CR1 1324 1376 -201 190 282 87 10 chr12 12863930 12864033 -130922422 - MIR SINE MIR -68 140 30 2300 112 3 0 chr12 12864384 12864687 -130921768 - AluSx SINE Alu -8 304 1 254 233 113 94 chr12 12864738 12864812 -130921643 + MIR SINE MIR 53 124 -138 1539 183 79 3 chr12 12864812 12865102 -130921353 - AluJo SINE Alu 0 312 1 254 233 113 94 chr12 12865102 12865186 -130921269 + MIR SINE MIR 124 214 -48 29 60 0 0 chr12 12865196 12865246 -130921209 + AT_rich Low_complexity Low_complexity 1 50 0 275 275 65 22 chr12 12866020 12866158 -130920297 - MIR SINE MIR -65 197 54 420 216 244 34 chr12 12867678 12868107 -130918348 + L2 LINE L2 2715 3238 -75 1220 164 100 74 chr12 12868408 12868645 -130917810 + MLT1A2 LTR MaLR 56 304 -70 2639 112 26 26 chr12 12868645 12869073 -130917382 + MSTA LTR MaLR 1 428 0 1220 164 100 74 chr12 12869073 12869146 -130917309 + MLT1A2 LTR MaLR 304 374 0 359 322 68 0 chr12 12869689 12869807 -130916648 + MER91A DNA MER1_type 44 169 -27 2185 129 12 26 chr12 12869915 12870257 -130916198 - MER1B DNA MER1_type 0 337 1 276 30 0 0 chr12 12870367 12870400 -130916055 + (CA)n Simple_repeat Simple_repeat 2 34 0 1840 154 0 4 chr12 12871881 12872161 -130914294 + AluJb SINE Alu 23 301 -11 239 293 124 25 chr12 12872161 12872403 -130914052 + L2 LINE L2 1710 1975 -1339 2496 53 0 23 chr12 12873352 12873655 -130912800 - AluY SINE Alu -15 296 1 249 336 109 14 chr12 12873802 12874022 -130912433 + MIR SINE MIR 20 260 -2 189 282 42 28 chr12 12874270 12874341 -130912114 + L2 LINE L2 3225 3296 -17 1954 171 0 0 chr12 12874470 12874779 -130911676 - AluJb SINE Alu -3 309 1 1666 194 57 27 chr12 12875023 12875394 -130911061 - MSTD LTR MaLR 0 396 15 440 304 15 7 chr12 12875770 12875905 -130910550 - MLT2F LTR ERVL -527 136 1 344 303 42 0 chr12 12875973 12876115 -130910340 - L1MC4 LINE L1 -701 7341 7194 4008 183 38 75 chr12 12876137 12877794 -130908661 - L1MC3 LINE L1 -6 6327 5316 410 209 104 41 chr12 12877795 12878015 -130908440 - Charlie7 DNA MER1_type -66 2546 2313 1235 149 45 33 chr12 12878016 12878258 -130908197 - L1MA4A LINE L1 0 6303 6059 10992 31 0 1 chr12 12878258 12879555 -130906900 - L1PA2 LINE L1 -1646 4500 3205 7844 19 6 0 chr12 12879553 12881196 -130905259 + L1PA2 LINE L1 4507 6154 -1 231 167 15 15 chr12 12881196 12881262 -130905193 - L1MA4A LINE L1 -235 6068 6003 3822 240 35 29 chr12 12881282 12882493 -130903962 - L1MC3 LINE L1 -850 5296 4078 2478 236 12 49 chr12 12882564 12883091 -130903364 - L1MC4a LINE L1 -1741 6067 5571 2370 103 3 0 chr12 12883091 12883393 -130903062 - AluSq SINE Alu -10 303 1 2478 236 12 49 chr12 12883393 12883584 -130902871 - L1MC4a LINE L1 -2237 5571 5375 262 282 89 32 chr12 12883590 12883714 -130902741 + L2 LINE L2 2591 2721 -593 364 337 84 70 chr12 12883873 12884217 -130902238 + L2 LINE L2 2924 3272 0 195 313 0 15 chr12 12884410 12884477 -130901978 - MIR3 SINE MIR 0 208 143 2372 113 0 0 chr12 12884653 12884962 -130901493 + AluSq SINE Alu 1 309 -4 464 307 99 65 chr12 12885624 12886149 -130900306 - L2 LINE L2 -43 3270 2708 773 183 8 0 chr12 12886149 12886280 -130900175 - FLAM_C SINE Alu -1 132 1 464 307 99 65 chr12 12886280 12886554 -130899901 - L2 LINE L2 -605 2708 2445 21 36 0 0 chr12 12886588 12886616 -130899839 + AT_rich Low_complexity Low_complexity 1 28 0 1489 179 61 32 chr12 12886619 12886899 -130899556 + AluJo SINE Alu 1 288 -24 365 304 64 12 chr12 12886927 12887098 -130899357 - HAL1 LINE L1 -19 2488 2309 356 267 29 9 chr12 12887094 12887199 -130899256 - HAL1 LINE L1 -1637 870 764 * 2132 168 24 40 chr12 12887900 12888353 -130898102 + L1MB3 LINE L1 5738 6183 0 242 290 7 43 chr12 12888521 12888659 -130897796 + GA-rich Low_complexity Low_complexity 2 134 0 2225 213 48 10 chr12 12889216 12889719 -130896736 + MLT1G LTR MaLR 69 590 0 303 28 0 0 chr12 12889819 12889855 -130896600 + (TA)n Simple_repeat Simple_repeat 1 36 0 662 56 0 0 chr12 12889865 12889954 -130896501 - Alu SINE Alu 0 309 221 365 279 109 18 chr12 12889994 12890159 -130896296 - L1MC4a LINE L1 -1907 5901 5722 604 237 113 66 chr12 12890175 12890449 -130896006 - L1MC4a LINE L1 -2177 5631 5345 4214 181 5 50 chr12 12890456 12890867 -130895588 - L1 LINE L1 -1134 5012 4584 241 35 0 0 chr12 12890867 12890896 -130895559 + U6 snRNA snRNA 2 30 -77 4214 181 5 50 chr12 12890896 12891385 -130895070 - L1 LINE L1 -1562 4584 4125 280 256 23 0 chr12 12891394 12891480 -130894975 - L1MC4a LINE L1 -2467 5341 5254 289 241 44 84 chr12 12891627 12891813 -130894642 - MLT1J LTR MaLR 0 564 362 251 271 29 14 chr12 12891922 12891992 -130894463 - MLT1J LTR MaLR -331 180 110 474 291 115 36 chr12 12892159 12892935 -130893520 - L1MC4a LINE L1 -1072 5074 4238 2253 98 0 0 chr12 12893194 12893480 -130892975 - AluSx SINE Alu -12 300 15 6421 162 26 50 chr12 12895619 12897331 -130889124 + L1MC1 LINE L1 4677 6327 -6 993 112 0 41 chr12 12897741 12897910 -130888545 - AluSg/x SINE Alu -17 295 134 2415 71 3 0 chr12 12897910 12898207 -130888248 - AluY SINE Alu -13 298 1 3058 164 20 63 chr12 12899250 12899889 -130886566 + LTR9 LTR ERV1 1 612 0 1777 175 0 13 chr12 12901604 12901907 -130884548 - AluJo SINE Alu -5 307 9 2670 27 3 3 chr12 12902842 12903143 -130883312 - AluY SINE Alu -10 301 1 1157 103 0 0 chr12 12903143 12903289 -130883166 - AluSq/x SINE Alu -167 146 1 358 265 10 10 chr12 12904651 12904749 -130881706 + MER5B DNA MER1_type 81 178 0 21 0 0 0 chr12 12906153 12906174 -130880281 + AT_rich Low_complexity Low_complexity 1 21 0 189 287 277 0 chr12 12906739 12906833 -130879622 - L2 LINE L2 -7 3265 3146 383 249 55 55 chr12 12906865 12907030 -130879425 + MIR SINE MIR 13 177 -85 1776 154 44 17 chr12 12907030 12907328 -130879127 - AluJb SINE Alu -6 306 1 2384 110 0 0 chr12 12907342 12907651 -130878804 - AluSx SINE Alu 0 312 4 804 152 8 0 chr12 12907689 12907814 -130878641 - FLAM_C SINE Alu -7 126 1 284 272 136 14 chr12 12909041 12909188 -130877267 - L3 LINE CR1 -3 1574 1410 349 340 84 70 chr12 12910639 12910983 -130875472 + L2 LINE L2 2924 3272 0 195 313 0 15 chr12 12911176 12911243 -130875212 - MIR3 SINE MIR 0 208 143 2372 113 0 0 chr12 12911419 12911728 -130874727 + AluSq SINE Alu 1 309 -4 464 308 92 66 chr12 12912387 12912912 -130873543 - L2 LINE L2 -43 3270 2710 753 191 8 0 chr12 12912912 12913043 -130873412 - FLAM_C SINE Alu -1 132 1 464 308 92 66 chr12 12913043 12913317 -130873138 - L2 LINE L2 -603 2710 2445 21 36 0 0 chr12 12913351 12913379 -130873076 + AT_rich Low_complexity Low_complexity 1 28 0 1595 161 65 24 chr12 12913382 12913674 -130872781 + AluJo SINE Alu 1 304 -8 1945 226 73 18 chr12 12913677 12914169 -130872286 - LTR40a LTR ERVL 0 519 1 860 164 26 20 chr12 12914504 12914656 -130871799 + FRAM SINE Alu 1 153 -13 185 183 402 0 chr12 12915579 12915661 -130870794 - L2 LINE L2 -2 3270 3156 2424 66 7 7 chr12 12916183 12916487 -130869968 - AluY SINE Alu -5 306 3 2249 118 0 3 chr12 12917318 12917623 -130868832 + AluSx SINE Alu 2 305 -7 1324 171 69 104 chr12 12917635 12917676 -130868779 + MLT1B LTR MaLR 1 42 -348 2338 82 7 0 chr12 12917676 12917968 -130868487 + AluSp SINE Alu 1 294 -19 1324 171 69 104 chr12 12917968 12918330 -130868125 + MLT1B LTR MaLR 42 390 0 3402 161 91 18 chr12 12919421 12919517 -130866938 - MER21B LTR ERV1 -85 778 690 3545 111 45 0 chr12 12919517 12919609 -130866846 - MER41A LTR ERV1 0 554 468 2528 31 3 3 chr12 12919609 12919900 -130866555 + AluY SINE Alu 1 291 -20 3545 111 45 0 chr12 12919900 12920337 -130866118 - MER41A LTR ERV1 -86 468 1 3402 161 91 18 chr12 12920337 12920910 -130865545 - MER21B LTR ERV1 -173 690 60 2470 74 0 0 chr12 12920911 12921208 -130865247 + AluY SINE Alu 1 297 -14 1732 189 46 19 chr12 12922127 12922544 -130863911 + MSTA LTR MaLR 1 428 0 363 243 139 28 chr12 12922544 12922688 -130863767 + MIR SINE MIR 77 236 -26 193 109 87 43 chr12 12922938 12922984 -130863471 - L2 LINE L2 0 3313 3266 1970 153 3 0 chr12 12923575 12923883 -130862572 + AluJb SINE Alu 1 309 -3 3236 141 34 25 chr12 12923983 12924256 -130862199 - MER7C DNA MER2_type -2426 602 333 2605 68 0 0 chr12 12924256 12924566 -130861889 + AluY SINE Alu 1 310 -1 3236 141 34 25 chr12 12924566 12924889 -130861566 - MER7C DNA MER2_type -2695 333 1 795 220 0 12 chr12 12925178 12925351 -130861104 + MER5B DNA MER1_type 7 177 -1 591 214 16 0 chr12 12925525 12925651 -130860804 + MER5A DNA MER1_type 2 129 -60 2508 77 0 0 chr12 12926501 12926812 -130859643 - AluY SINE Alu 0 311 1 460 252 27 41 chr12 12927053 12927200 -130859255 - MLT1J LTR MaLR -6 505 361 1926 152 7 10 chr12 12927211 12927514 -130858941 + AluSx SINE Alu 1 302 -10 654 262 120 75 chr12 12928057 12928500 -130857955 + HAL1 LINE L1 1 463 -2044 1750 173 0 23 chr12 12929649 12929949 -130856506 + AluJb SINE Alu 5 297 -15 2144 86 7 20 chr12 12930212 12930504 -130855951 - AluY SINE Alu -23 288 1 298 183 183 25 chr12 12930665 12930785 -130855670 - MER69 DNA AcHobo -10 2516 2378 1531 165 26 0 chr12 12930926 12931198 -130855257 + L1MC3 LINE L1 7500 7778 -7 642 253 96 76 chr12 12931212 12931570 -130854885 - L1M3 LINE L1 -515 5665 5289 368 201 49 69 chr12 12931684 12931828 -130854627 - L1ME4a LINE L1 -18 6103 5963 376 190 190 7 chr12 12931866 12931936 -130854519 + L1MA8 LINE L1 6121 6177 -114 1904 154 3 13 chr12 12931936 12932241 -130854214 - AluJo SINE Alu -10 302 1 376 190 190 7 chr12 12932241 12932312 -130854143 + L1MA8 LINE L1 6177 6288 -3 936 244 34 15 chr12 12932476 12932742 -130853713 + HsTC2c DNA Tc2 2 272 -457 518 251 240 0 chr12 12932751 12932930 -130853525 + HsTC2c DNA Tc2 508 729 0 1737 155 8 0 chr12 12933251 12933509 -130852946 - AluSq SINE Alu -53 260 1 4119 157 48 28 chr12 12933535 12934426 -130852029 - L1MDa LINE L1 -4152 2388 1480 748 251 69 0 chr12 12934422 12934597 -130851858 - L1MDa LINE L1 -5765 775 589 * 2053 110 13 23 chr12 12935011 12935321 -130851134 + AluSx SINE Alu 1 307 -5 522 65 54 21 chr12 12935503 12935596 -130850859 + L1MD1 LINE L1 6147 6242 0 395 214 22 129 chr12 12935653 12935831 -130850624 - MLT1H LTR MaLR -165 384 226 1764 123 0 4 chr12 12935845 12936087 -130850368 + AluSx SINE Alu 5 245 -67 2206 119 0 10 chr12 12936087 12936399 -130850056 + AluSx SINE Alu 1 309 -3 439 233 99 80 chr12 12936476 12936702 -130849753 + MLT1L LTR MaLR 101 397 -203 198 0 0 0 chr12 12936784 12936806 -130849649 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 333 260 47 8 chr12 12936873 12937000 -130849455 + HAL1 LINE L1 1185 1316 -1191 1310 151 33 174 chr12 12937034 12937191 -130849264 - MLT1A2 LTR MaLR 0 374 196 2379 96 0 0 chr12 12937191 12937492 -130848963 - AluSc SINE Alu -8 301 1 1310 151 33 174 chr12 12937492 12937758 -130848697 - MLT1A2 LTR MaLR -178 196 11 252 297 16 0 chr12 12938491 12938583 -130847872 + MIR SINE MIR 48 144 -64 938 278 80 91 chr12 12938602 12939025 -130847430 + L1MEc LINE L1 37 463 -5933 2013 145 0 16 chr12 12939025 12939328 -130847127 + AluJo SINE Alu 1 298 -14 938 278 80 91 chr12 12939328 12939904 -130846551 + L1MEc LINE L1 463 1018 -5378 1941 123 3 27 chr12 12939904 12940196 -130846259 + AluSx SINE Alu 3 287 -25 938 278 80 91 chr12 12940196 12940651 -130845804 + L1MEc LINE L1 1018 1476 -4920 21 36 0 0 chr12 12941041 12941069 -130845386 + AT_rich Low_complexity Low_complexity 1 28 0 188 277 31 0 chr12 12941770 12941835 -130844620 - L2 LINE L2 -556 2758 2692 324 343 37 8 chr12 12942133 12942267 -130844188 + MIR SINE MIR 47 184 -78 1759 159 27 10 chr12 12942365 12942660 -130843795 - AluJo SINE Alu -12 300 1 240 277 38 0 chr12 12942936 12943037 -130843418 + MIR SINE MIR 60 142 -66 1483 150 116 45 chr12 12943489 12943870 -130842585 - MER69 DNA AcHobo -635 1891 1484 1354 131 0 70 chr12 12944174 12944229 -130842226 + AluJb SINE Alu 82 139 -173 2066 108 0 59 chr12 12944229 12944535 -130841920 + AluSx SINE Alu 1 288 -24 1354 131 0 70 chr12 12944535 12944708 -130841747 + AluJb SINE Alu 139 294 -18 2891 121 5 2 chr12 12945090 12945513 -130840942 + MER41B LTR ERV1 1 424 -211 1412 101 0 0 chr12 12945613 12945792 -130840663 - AluSx SINE Alu -121 191 13 662 139 37 0 chr12 12945805 12945913 -130840542 + MER41A LTR ERV1 443 554 0 225 264 35 11 chr12 12945929 12946016 -130840439 + MIR SINE MIR 70 158 -104 288 0 0 0 chr12 12946285 12946317 -130840138 + (CA)n Simple_repeat Simple_repeat 2 33 0 1428 149 0 2 chr12 12946507 12946750 -130839705 - AluJb SINE Alu -26 286 1 246 245 19 0 chr12 12946750 12946803 -130839652 + MER21B LTR ERV1 18 71 -792 2042 141 3 6 chr12 12946803 12947116 -130839339 - AluSx SINE Alu 0 312 1 736 256 46 15 chr12 12947137 12947399 -130839056 - L1MCc LINE L1 -6129 294 25 4735 185 26 13 chr12 12947769 12948958 -130837497 - L1MB8 LINE L1 -17 6161 4960 1230 172 86 81 chr12 12948958 12949330 -130837125 + MLT1A2 LTR MaLR 1 374 0 4735 185 26 13 chr12 12949330 12949426 -130837029 - L1MB8 LINE L1 -1218 4960 4867 17289 28 0 0 chr12 12950439 12952457 -130833998 - L1P LINE L1 -924 5222 3205 6380 24 1 0 chr12 12952455 12953199 -130833256 + L1P LINE L1 4507 5251 -895 * 789 116 8 0 chr12 12953299 12953420 -130833035 + AluSp/q SINE Alu 191 312 -1 1707 153 80 0 chr12 12953433 12953720 -130832735 + AluSg SINE Alu 1 310 0 692 194 0 22 chr12 12953888 12954022 -130832433 + AluJo SINE Alu 6 136 -176 1638 130 119 4 chr12 12954087 12954364 -130832091 + AluSx SINE Alu 1 309 -3 367 193 44 61 chr12 12954365 12954479 -130831976 - L1MEc LINE L1 -6242 154 43 228 325 39 132 chr12 12954595 12955026 -130831429 - L2 LINE L2 -35 3237 2847 2198 103 0 17 chr12 12955059 12955361 -130831094 + AluY SINE Alu 1 297 -14 34 24 0 0 chr12 12957164 12957205 -130829250 + AT_rich Low_complexity Low_complexity 1 41 0 1780 136 15 11 chr12 12957211 12957484 -130828971 - AluSx SINE Alu -38 274 1 378 236 11 0 chr12 12958701 12958790 -130827665 + MIR SINE MIR 36 125 -83 4711 125 45 37 chr12 12959303 12960148 -130826307 - L1MA8 LINE L1 -25 6266 5415 267 133 0 0 chr12 12961041 12961086 -130825369 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1734 178 0 25 chr12 12961089 12961409 -130825046 - AluJb SINE Alu 0 312 1 1026 111 0 0 chr12 12961409 12961544 -130824911 - AluJb SINE Alu -177 135 1 360 209 8 23 chr12 12961550 12961679 -130824776 + CT-rich Low_complexity Low_complexity 4 130 0 183 368 53 0 chr12 12963296 12963391 -130823064 - L3 LINE CR1 -20 1557 1458 231 340 38 19 chr12 12963465 12963571 -130822884 + L2 LINE L2 3133 3240 -32 437 264 132 9 chr12 12963580 12963792 -130822663 - L3 LINE CR1 -161 1416 1179 218 299 117 13 chr12 12963793 12963870 -130822585 - L3 LINE CR1 -364 1213 1129 784 292 10 5 chr12 12964103 12964312 -130822143 + MLT1J LTR MaLR 2 211 -300 243 203 174 0 chr12 12964453 12964500 -130821955 + MLT1J LTR MaLR 423 461 -50 228 86 0 0 chr12 12964500 12964535 -130821920 + (TTG)n Simple_repeat Simple_repeat 3 37 0 243 203 174 0 chr12 12964535 12964556 -130821899 + MLT1J LTR MaLR 461 503 -8 30 0 0 0 chr12 12966260 12966290 -130820165 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 12966614 12966642 -130819813 + AT_rich Low_complexity Low_complexity 1 28 0 229 307 40 0 chr12 12967324 12967399 -130819056 + MER5B DNA MER1_type 1 78 -100 2197 136 0 3 chr12 12967403 12967711 -130818744 - AluSx SINE Alu -5 307 1 214 169 17 68 chr12 12967815 12967874 -130818581 + MIR SINE MIR 47 102 -160 426 39 0 0 chr12 12968830 12968882 -130817573 + (TG)n Simple_repeat Simple_repeat 2 53 0 398 205 25 98 chr12 12969680 12969802 -130816653 - MLT1J LTR MaLR -175 336 224 779 163 31 0 chr12 12969850 12969979 -130816476 - AluJo SINE Alu -178 134 2 385 242 165 28 chr12 12969985 12970167 -130816288 - MLT1J LTR MaLR -295 216 10 1631 129 3 45 chr12 12970533 12970819 -130815636 + AluSx SINE Alu 23 296 -16 599 281 39 20 chr12 12971883 12972086 -130814369 - MER63A DNA MER1_type -2 208 2 2537 160 71 23 chr12 12973509 12974029 -130812426 - L1MB7 LINE L1 -13 6171 5627 2399 78 0 16 chr12 12974038 12974347 -130812108 - AluY SINE Alu -7 304 1 2309 104 0 0 chr12 12974834 12975132 -130811323 - AluSx SINE Alu -14 298 1 376 259 62 9 chr12 12975265 12975377 -130811078 - MIR SINE MIR -109 153 36 520 245 170 0 chr12 12975385 12975544 -130810911 + MER5A DNA MER1_type 4 189 0 668 263 76 8 chr12 12975934 12976170 -130810285 - MIR SINE MIR -9 253 2 278 263 0 66 chr12 12976926 12977063 -130809392 + HERVH LTR ERV1 2868 2995 -4718 * 886 149 20 0 chr12 12977042 12977190 -130809265 + HERVH LTR ERV1 3140 3290 -4423 * 3461 100 6 6 chr12 12977180 12977682 -130808773 + HERVH LTR ERV1 3492 3993 -3720 2190 116 0 3 chr12 12977684 12977986 -130808469 + HERVH LTR ERV1 4488 4788 -2925 703 235 61 15 chr12 12978635 12978831 -130807624 - MIR SINE MIR -49 213 9 1930 173 99 15 chr12 12978866 12979259 -130807196 + MSTB LTR MaLR 1 426 0 196 206 309 0 chr12 12979386 12979423 -130807032 + MIR SINE MIR 161 249 -13 199 161 0 0 chr12 12979423 12979454 -130807001 + L2 LINE L2 3223 3253 -19 280 256 23 0 chr12 12980623 12980709 -130805746 + L1M LINE L1 5254 5341 -2467 4175 181 5 50 chr12 12980718 12981207 -130805248 + L1 LINE L1 4125 4584 -1562 242 35 0 0 chr12 12981207 12981236 -130805219 - U6 snRNA snRNA -77 30 2 4175 181 5 50 chr12 12981236 12981647 -130804808 + L1 LINE L1 4584 5012 -1134 321 225 7 35 chr12 12981803 12981945 -130804510 + CT-rich Low_complexity Low_complexity 4 141 0 354 262 8 40 chr12 12981990 12982116 -130804339 + CT-rich Low_complexity Low_complexity 4 125 0 396 0 0 0 chr12 12982309 12982353 -130804102 + (TG)n Simple_repeat Simple_repeat 2 45 0 2753 264 102 18 chr12 12982398 12983566 -130802889 - L1MEc LINE L1 -4736 1479 229 223 283 0 0 chr12 12984682 12984742 -130801713 + MIR SINE MIR 175 234 -28 420 292 124 22 chr12 12985263 12985441 -130801014 - MIR SINE MIR -11 251 56 1799 151 10 17 chr12 12985523 12985821 -130800634 + AluJo SINE Alu 1 296 -16 1004 242 109 8 chr12 12986946 12987202 -130799253 - MER58 DNA MER1_type -2138 282 1 207 286 16 0 chr12 12987202 12987265 -130799190 - MIR3 SINE MIR -48 160 97 853 102 16 16 chr12 12987788 12987916 -130798539 - AluSq/x SINE Alu -184 129 2 3144 128 11 78 chr12 12988006 12988631 -130797824 - L1MA9 LINE L1 -5 6307 5725 438 262 101 13 chr12 12989452 12989601 -130796854 + MIR SINE MIR 31 192 -70 304 148 2 0 chr12 12989845 12989892 -130796563 + Alu SINE Alu 1 42 -260 21 0 0 0 chr12 12989992 12990013 -130796442 + AT_rich Low_complexity Low_complexity 1 21 0 216 197 14 70 chr12 12990019 12990090 -130796365 + GA-rich Low_complexity Low_complexity 1 67 0 374 222 120 8 chr12 12990992 12991048 -130795407 - MLT1H LTR MaLR -13 536 488 1993 134 10 0 chr12 12991048 12991355 -130795100 + AluSp SINE Alu 2 311 -2 374 222 120 8 chr12 12991355 12991415 -130795040 - MLT1H LTR MaLR -61 488 407 6596 120 38 1 chr12 12992070 12993210 -130793245 + L1MA5A LINE L1 5114 6294 -3 303 125 0 0 chr12 12993214 12993262 -130793193 + L1MC3 LINE L1 7461 7508 -277 432 187 0 0 chr12 12993274 12993349 -130793106 + AluJo SINE Alu 2 76 -236 1605 185 23 3 chr12 12993891 12994194 -130792261 + AluJo SINE Alu 1 309 -3 378 62 250 0 chr12 12994307 12994371 -130792084 + MADE1 DNA Mariner 1 80 0 229 272 103 15 chr12 12994462 12994598 -130791857 + L1ME LINE L1 5691 5838 -283 923 174 58 29 chr12 12994613 12994820 -130791635 + AluJo SINE Alu 86 298 -14 572 126 102 0 chr12 12994905 12995032 -130791423 + AluY SINE Alu 2 141 -170 7630 22 10 0 chr12 12995132 12996057 -130790398 + L1PA4 LINE L1 5221 6155 0 5502 111 35 1 chr12 12996757 12997577 -130788878 - HERVH LTR ERV1 -5604 2109 1262 32 43 0 0 chr12 12997591 12997637 -130788818 + GC_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 12997651 12997673 -130788782 + GC_rich Low_complexity Low_complexity 1 22 0 4167 134 18 5 chr12 12998087 12998751 -130787704 + L1MA7 LINE L1 5619 6291 0 187 299 221 8 chr12 12999167 12999294 -130787161 + L3 LINE CR1 1198 1351 -226 1832 148 0 3 chr12 12999449 12999747 -130786708 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12999770 12999813 -130786642 - MER34B LTR ERV1 -466 99 58 1807 108 7 49 chr12 13000122 13000428 -130786027 - AluJb SINE Alu -19 293 1 235 325 26 0 chr12 13000479 13000556 -130785899 + MIR SINE MIR 1 79 -183 1713 195 142 14 chr12 13000680 13001110 -130785345 - MER31A LTR ERV1 0 485 1 1265 193 0 0 chr12 13001841 13002059 -130784396 + HERVH LTR ERV1 4932 5149 -2564 1413 126 23 0 chr12 13002060 13002275 -130784180 + HERVH LTR ERV1 5600 5819 -1894 * 2440 90 50 13 chr12 13002273 13002651 -130783804 + HERVH LTR ERV1 7322 7713 0 2120 115 154 5 chr12 13002651 13003041 -130783414 + LTR7 LTR ERV1 1 448 -2 358 206 18 13 chr12 13003043 13003140 -130783315 - AluS SINE Alu -229 74 3 2315 38 41 7 chr12 13004065 13004358 -130782097 + AluY SINE Alu 1 303 -8 366 324 103 79 chr12 13004660 13005067 -130781388 - L2 LINE L2 0 3313 2897 472 122 22 22 chr12 13005732 13005822 -130780633 - Tigger2 DNA MER2_type -356 2362 2273 462 152 0 0 chr12 13005813 13005879 -130780576 - Tigger2 DNA MER2_type -2651 67 2 * 408 311 37 0 chr12 13006064 13006199 -130780256 + MIR SINE MIR 110 249 -13 2242 76 3 3 chr12 13006282 13006584 -130779871 + AluSg SINE Alu 3 304 -6 314 402 0 27 chr12 13006869 13007053 -130779402 + C-rich Low_complexity Low_complexity 2 180 0 272 308 15 0 chr12 13007061 13007126 -130779329 + polypyrimidine Low_complexity Low_complexity 6 71 0 381 167 45 0 chr12 13007268 13007334 -130779121 + AluS SINE Alu 1 69 -239 1211 229 14 32 chr12 13007400 13007771 -130778684 - L1M4 LINE L1 -3417 2729 2366 2039 101 0 49 chr12 13009115 13009423 -130777032 + AluSg SINE Alu 1 293 -17 208 273 0 18 chr12 13009535 13009590 -130776865 - L3 LINE CR1 -655 922 869 23 68 0 0 chr12 13009780 13009824 -130776631 + GC_rich Low_complexity Low_complexity 1 44 0 321 281 0 0 chr12 13009886 13010020 -130776435 + C-rich Low_complexity Low_complexity 1 134 0 297 186 0 0 chr12 13010124 13010194 -130776261 + C-rich Low_complexity Low_complexity 1 70 0 1891 112 17 10 chr12 13010472 13010766 -130775689 - AluSx SINE Alu -14 298 3 709 157 7 82 chr12 13010779 13010926 -130775529 - FLAM_C SINE Alu -6 137 2 392 353 12 42 chr12 13011612 13011779 -130774676 - L3 LINE CR1 -107 1470 1309 2142 81 7 3 chr12 13011956 13012251 -130774204 + AluSx SINE Alu 1 296 -16 2829 176 36 6 chr12 13012655 13012691 -130773764 - MLT2B2 LTR ERVL 0 515 482 255 31 0 0 chr12 13012691 13012723 -130773732 + (CA)n Simple_repeat Simple_repeat 1 32 0 2829 176 36 6 chr12 13012723 13013186 -130773269 - MLT2B2 LTR ERVL -33 482 1 435 317 109 25 chr12 13013265 13013587 -130772868 + MLT1K LTR MaLR 238 586 -2 1276 62 17 0 chr12 13013894 13014072 -130772383 + L1P LINE L1 4323 4503 -1643 1211 153 45 33 chr12 13014072 13014311 -130772144 + L1MA4A LINE L1 6059 6303 0 269 234 99 45 chr12 13014312 13014534 -130771921 + Charlie7 DNA MER1_type 2313 2546 -66 534 233 44 28 chr12 13014535 13014781 -130771674 + L1MC/D LINE L1 5316 5528 -816 1704 143 80 0 chr12 13015286 13015627 -130770828 + AluSx SINE Alu 1 364 0 645 94 21 10 chr12 13115664 13115760 -130670695 - AluY SINE Alu -14 297 201 195 146 0 0 chr12 13116760 13116801 -130669654 + (CA)n Simple_repeat Simple_repeat 1 41 0 310 336 62 62 chr12 13117508 13117734 -130668721 + L1MEc LINE L1 2034 2259 -4137 564 220 9 17 chr12 13132687 13132918 -130653537 + GA-rich Low_complexity Low_complexity 1 229 0 21 57 0 0 chr12 13133166 13133201 -130653254 + GC_rich Low_complexity Low_complexity 1 35 0 192 125 0 0 chr12 13133744 13133776 -130652679 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 * 302 238 100 0 chr12 13133761 13133841 -130652614 - L2 LINE L2 -1 3271 3184 1897 154 0 22 chr12 13134181 13134500 -130651955 - AluJb SINE Alu 0 312 1 2049 80 30 0 chr12 13135754 13136054 -130650401 - AluSc SINE Alu 0 309 1 287 103 0 17 chr12 13139252 13139310 -130647145 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 2358 98 0 0 chr12 13141542 13141848 -130644607 - AluSq SINE Alu -7 306 1 926 233 70 15 chr12 13142628 13142898 -130643557 + MLT1J2 LTR MaLR 4 288 -162 2161 102 0 16 chr12 13142962 13143265 -130643190 + AluSq SINE Alu 1 298 -15 483 63 0 0 chr12 13143316 13143379 -130643076 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 1099 156 11 0 chr12 13143380 13143560 -130642895 - AluSg/x SINE Alu -4 308 127 207 262 0 68 chr12 13144324 13144427 -130642028 + CT-rich Low_complexity Low_complexity 1 96 0 1878 140 0 7 chr12 13144444 13144729 -130641726 - AluSq SINE Alu -30 283 1 245 257 71 0 chr12 13146222 13146292 -130640163 - MER91B DNA MER1_type 0 190 116 277 281 60 108 chr12 13146297 13146464 -130639991 - MER91A DNA MER1_type -36 160 2 449 173 64 5 chr12 13149212 13149419 -130637036 - L1MC3 LINE L1 -336 7659 7188 235 307 11 11 chr12 13149422 13149510 -130636945 - MLT1F1 LTR MaLR -445 122 35 1084 145 69 34 chr12 13149510 13149772 -130636683 - L1MC3 LINE L1 -688 7097 6827 456 149 14 0 chr12 13149779 13149853 -130636602 + AluJ/FRAM SINE Alu 220 294 -18 722 108 47 93 chr12 13149930 13150059 -130636396 - FLAM_A SINE Alu -7 126 4 2192 91 7 0 chr12 13150102 13150398 -130636057 - AluSx SINE Alu -14 298 1 901 107 0 0 chr12 13151055 13151177 -130635278 - AluSq/x SINE Alu -190 122 1 234 316 51 0 chr12 13151242 13151321 -130635134 + MIR SINE MIR 82 164 -98 864 157 0 0 chr12 13151369 13151503 -130634952 + FLAM_C SINE Alu 7 140 -3 1695 132 7 37 chr12 13151513 13151808 -130634647 + AluJb SINE Alu 9 294 -18 288 77 0 0 chr12 13152033 13152072 -130634383 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr12 13152525 13152549 -130633906 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 2138 92 0 0 chr12 13153984 13154267 -130632188 - AluSx SINE Alu -1 311 29 184 279 49 0 chr12 13155019 13155080 -130631375 + L2 LINE L2 3209 3272 0 182 264 14 83 chr12 13155168 13155240 -130631215 - MIR SINE MIR -112 150 84 974 143 25 6 chr12 13155748 13155909 -130630546 + AluSg/x SINE Alu 124 287 -25 764 163 0 23 chr12 13155922 13156051 -130630404 + FLAM_C SINE Alu 1 126 -7 1873 131 0 7 chr12 13156373 13156683 -130629772 + AluSx SINE Alu 5 312 0 288 235 151 17 chr12 13156683 13156802 -130629653 + LTR16A1 LTR ERVL 33 167 -290 232 178 0 0 chr12 13159332 13159377 -130627078 - MER117 DNA MER1_type -95 102 58 22 0 0 0 chr12 13159516 13159538 -130626917 + GC_rich Low_complexity Low_complexity 1 22 0 222 269 45 30 chr12 13159918 13159985 -130626470 - MIR3 SINE MIR -53 155 88 358 316 33 13 chr12 13160834 13160997 -130625458 - MIR3 SINE MIR -61 147 10 182 316 96 44 chr12 13160927 13161063 -130625392 + MIR3 SINE MIR 18 160 -48 * 552 145 7 43 chr12 13161736 13161874 -130624581 - L1M4b LINE L1 -5191 1668 1536 * 751 214 55 55 chr12 13161871 13162011 -130624444 - L1M4b LINE L1 -6543 316 174 2089 114 30 0 chr12 13162011 13162308 -130624147 - AluSx SINE Alu -6 306 1 751 214 55 55 chr12 13162308 13162424 -130624031 - L1M4b LINE L1 -6684 175 60 2230 69 40 13 chr12 13162479 13162782 -130623673 - AluY SINE Alu 0 311 1 514 157 0 0 chr12 13163313 13163402 -130623053 + AluSp/q SINE Alu 223 311 -2 2149 92 26 3 chr12 13163587 13163891 -130622564 - AluSx SINE Alu -1 311 1 1236 153 51 9 chr12 13164295 13164510 -130621945 - MER58A DNA MER1_type 0 224 1 1025 86 7 0 chr12 13164863 13165003 -130621452 + AluSg/x SINE Alu 165 305 -5 1870 120 43 7 chr12 13165220 13165519 -130620936 + AluSx SINE Alu 3 312 0 2523 171 37 4 chr12 13165519 13165974 -130620481 + L1PB3 LINE L1 5680 6149 -5 2049 105 0 0 chr12 13165974 13166250 -130620205 - AluSq SINE Alu -13 300 25 337 300 133 24 chr12 13167056 13167299 -130619156 + L1MCa LINE L1 2216 3551 -2875 1591 99 5 0 chr12 13167402 13167613 -130618842 - AluSx SINE Alu -100 212 1 277 194 0 28 chr12 13167625 13167733 -130618722 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 222 271 11 66 chr12 13168112 13168293 -130618162 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 1470 162 73 7 chr12 13168635 13168907 -130617548 - AluJo SINE Alu -14 298 9 797 168 0 0 chr12 13168919 13169044 -130617411 - FLAM_C SINE Alu -8 125 1 921 267 64 45 chr12 13169702 13169850 -130616605 + L1ME3A LINE L1 5537 5681 -489 2068 91 32 0 chr12 13169850 13170135 -130616320 + AluSg SINE Alu 1 294 -16 921 267 64 45 chr12 13170135 13170360 -130616095 + L1ME3A LINE L1 5681 5917 -253 1743 111 9 97 chr12 13170776 13171118 -130615337 + AluSq SINE Alu 2 313 0 957 194 6 0 chr12 13171358 13171523 -130614932 - AluJb SINE Alu -15 297 132 891 160 0 0 chr12 13172662 13172787 -130613668 + FLAM_C SINE Alu 1 125 -8 253 243 68 0 chr12 13172869 13172943 -130613512 + MIR3 SINE MIR 85 163 -45 187 318 15 15 chr12 13175130 13175196 -130611259 - L2 LINE L2 0 3272 3207 366 23 0 0 chr12 13175394 13175437 -130611018 + (TG)n Simple_repeat Simple_repeat 1 43 0 357 24 0 0 chr12 13176628 13176670 -130609785 + (CA)n Simple_repeat Simple_repeat 1 42 0 298 246 15 0 chr12 13177012 13177077 -130609378 + MIR SINE MIR 80 145 -117 198 259 148 9 chr12 13177089 13177197 -130609258 - L2 LINE L2 -226 3087 2965 861 200 55 10 chr12 13177197 13177397 -130609058 + AluJo SINE Alu 1 209 -103 678 276 46 0 chr12 13178037 13178233 -130608222 - MIR SINE MIR -30 232 28 1993 96 31 0 chr12 13178237 13178528 -130607927 - AluSx SINE Alu -10 302 3 399 307 113 33 chr12 13178726 13178938 -130607517 - MIR SINE MIR -5 257 29 399 274 9 26 chr12 13179068 13179181 -130607274 + L2 LINE L2 3153 3263 -9 270 245 196 39 chr12 13179302 13179404 -130607051 + L2 LINE L2 3193 3310 -3 221 302 0 0 chr12 13179536 13179589 -130606866 - MER5B DNA MER1_type -1 177 125 2117 112 3 3 chr12 13179602 13179906 -130606549 + AluSx SINE Alu 1 304 -8 1026 128 27 0 chr12 13179981 13180130 -130606325 - AluSx SINE Alu -159 153 1 1988 103 0 8 chr12 13181084 13181347 -130605108 + AluSx SINE Alu 8 268 -44 186 299 56 37 chr12 13181368 13181475 -130604980 - L2 LINE L2 -822 2492 2384 393 286 45 13 chr12 13181645 13181799 -130604656 + MIR SINE MIR 8 166 -96 2042 127 3 19 chr12 13181837 13182151 -130604304 + AluSx SINE Alu 1 309 -3 244 213 0 0 chr12 13182314 13182361 -130604094 - MLT1F1 LTR MaLR -8 559 513 360 232 13 110 chr12 13182561 13182604 -130603851 + MER5A DNA MER1_type 2 48 -141 1372 169 104 18 chr12 13182604 13182883 -130603572 - AluJo SINE Alu -9 303 1 360 232 13 110 chr12 13182883 13182994 -130603461 + MER5A DNA MER1_type 48 141 -48 1249 143 73 54 chr12 13183001 13183182 -130603273 - L1MC3 LINE L1 -21 7764 7573 2028 126 10 0 chr12 13183182 13183475 -130602980 - AluSx SINE Alu -16 296 1 1249 143 73 54 chr12 13183475 13183608 -130602847 - L1MC3 LINE L1 -212 7573 7444 1624 160 7 10 chr12 13183609 13183902 -130602553 - AluSx SINE Alu -20 292 1 1496 137 24 98 chr12 13183912 13184247 -130602208 - AluYb8 SINE Alu -8 310 1 286 229 49 0 chr12 13184694 13184816 -130601639 + (TG)n Simple_repeat Simple_repeat 1 128 0 237 106 35 35 chr12 13184835 13184920 -130601535 + (TG)n Simple_repeat Simple_repeat 2 86 0 434 82 36 36 chr12 13184935 13185045 -130601410 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 378 0 0 0 chr12 13185141 13185183 -130601272 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 256 233 138 0 chr12 13185723 13185843 -130600612 - MIR SINE MIR -57 151 12 279 371 35 7 chr12 13186138 13186281 -130600174 + MIR SINE MIR 56 202 -60 2004 98 0 0 chr12 13188395 13188661 -130597794 - AluSx SINE Alu -46 266 1 497 178 85 0 chr12 13188661 13188779 -130597676 + Charlie5 DNA MER1_type 2475 2602 -10 1180 188 5 0 chr12 13189161 13189374 -130597081 + AluJo SINE Alu 1 214 -98 326 295 9 38 chr12 13189632 13189737 -130596718 + L1 LINE L1 3253 3354 -2792 1979 66 0 0 chr12 13189738 13189981 -130596474 + AluY SINE Alu 1 243 -68 22 0 0 0 chr12 13190011 13190033 -130596422 + GC_rich Low_complexity Low_complexity 1 22 0 182 294 20 0 chr12 13190088 13190139 -130596316 - MIR3 SINE MIR -52 156 105 191 275 50 38 chr12 13190711 13190791 -130595664 + MIR SINE MIR 105 185 -77 342 200 0 0 chr12 13191049 13191109 -130595346 - MER33 DNA MER1_type -226 98 39 941 111 0 0 chr12 13191110 13191236 -130595219 + FLAM_C SINE Alu 1 126 -7 313 149 0 0 chr12 13191281 13191328 -130595127 - MER33 DNA MER1_type -271 53 7 609 266 38 22 chr12 13191543 13191727 -130594728 - MIR SINE MIR -74 188 2 2458 60 0 3 chr12 13192330 13192632 -130593823 - AluY SINE Alu -10 301 1 1893 96 0 0 chr12 13192657 13192908 -130593547 - AluSq SINE Alu -62 251 1 2067 129 10 3 chr12 13193259 13193569 -130592886 - AluSx SINE Alu 0 312 1 1791 122 52 14 chr12 13193880 13194015 -130592440 + AluSx SINE Alu 1 129 -183 2096 88 14 0 chr12 13194015 13194310 -130592145 + AluY SINE Alu 1 299 -12 1791 122 52 14 chr12 13194310 13194461 -130591994 + AluSx SINE Alu 129 298 -14 229 229 0 0 chr12 13194461 13194522 -130591933 - L1M4 LINE L1 -2696 3948 3888 1696 102 4 0 chr12 13194711 13194946 -130591509 - AluSq SINE Alu -77 236 1 22 35 0 0 chr12 13194952 13194981 -130591474 + AT_rich Low_complexity Low_complexity 1 29 0 5203 80 13 11 chr12 13195526 13196286 -130590169 - L1PB1 LINE L1 -1 6150 5389 406 323 194 0 chr12 13196718 13196935 -130589520 + MIR SINE MIR 2 260 -2 2084 108 3 0 chr12 13196935 13197222 -130589233 + AluSx SINE Alu 1 288 -24 751 253 138 26 chr12 13197365 13197669 -130588786 + MER46C DNA MER2_type 1 338 0 1181 217 0 0 chr12 13197908 13198138 -130588317 + L1MB5 LINE L1 5703 5932 -242 2190 115 0 6 chr12 13198264 13198578 -130587877 - AluSx SINE Alu 0 312 1 2085 106 14 0 chr12 13198580 13198873 -130587582 - AluSx SINE Alu -15 297 1 1635 234 27 44 chr12 13198873 13199347 -130587108 - L1M4 LINE L1 -5486 1056 591 2277 164 81 59 chr12 13199372 13199395 -130587060 - L1MC3 LINE L1 -1629 6156 6135 1232 142 178 36 chr12 13199395 13199648 -130586807 - AluJo SINE Alu -23 289 1 2277 164 81 59 chr12 13199648 13200166 -130586289 - L1MC3 LINE L1 -1650 6135 5603 2120 132 0 0 chr12 13200243 13200546 -130585909 - AluSq SINE Alu -10 303 1 968 263 75 76 chr12 13200550 13200971 -130585484 - L1M4 LINE L1 -5948 594 173 2125 115 0 0 chr12 13200971 13201259 -130585196 - AluSx SINE Alu -11 301 14 968 263 75 76 chr12 13201259 13201374 -130585081 - L1M4 LINE L1 -6369 173 59 192 77 0 0 chr12 13201413 13201439 -130585016 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 2179 119 3 3 chr12 13201439 13201751 -130584704 - AluSq SINE Alu -1 312 1 1140 115 10 35 chr12 13201954 13202154 -130584301 + AluSg/x SINE Alu 110 304 -6 555 254 33 44 chr12 13202271 13202452 -130584003 - MIR SINE MIR -42 220 42 1541 125 0 0 chr12 13202631 13202847 -130583608 - AluSg/x SINE Alu -24 286 71 740 243 40 144 chr12 13203191 13203511 -130582944 + L2 LINE L2 2691 2896 -417 1897 109 11 7 chr12 13203511 13203819 -130582636 + AluSx SINE Alu 1 309 0 740 243 40 144 chr12 13203819 13204197 -130582258 + L2 LINE L2 2896 3312 -1 289 256 165 33 chr12 13204287 13204408 -130582047 + L2 LINE L2 3136 3272 0 369 212 237 8 chr12 13204526 13204644 -130581811 + MER5A DNA MER1_type 42 186 -3 303 179 0 30 chr12 13204653 13204720 -130581735 + L2 LINE L2 2904 2968 -304 467 246 96 21 chr12 13205989 13206176 -130580279 - L2 LINE L2 -574 2740 2540 2227 97 0 7 chr12 13206226 13206536 -130579919 - AluSc SINE Alu -1 308 1 30 0 0 0 chr12 13206536 13206566 -130579889 + AT_rich Low_complexity Low_complexity 1 30 0 755 155 0 0 chr12 13206566 13206682 -130579773 - FLAM_C SINE Alu -25 118 3 287 224 26 0 chr12 13206718 13206794 -130579661 + MIR SINE MIR 115 192 -70 1238 134 9 63 chr12 13207398 13207469 -130578986 + AluSg/x SINE Alu 72 145 -165 2046 114 3 0 chr12 13207469 13207767 -130578688 + AluSp SINE Alu 1 299 -14 1238 134 9 63 chr12 13207767 13207918 -130578537 + AluSg/x SINE Alu 145 282 -28 268 291 26 7 chr12 13208994 13209090 -130577365 + GA-rich Low_complexity Low_complexity 1 103 -51 874 156 0 42 chr12 13209090 13209257 -130577198 + FRAM SINE Alu 1 160 -6 268 291 26 7 chr12 13209257 13209311 -130577144 + GA-rich Low_complexity Low_complexity 103 154 0 225 393 0 17 chr12 13209707 13209824 -130576631 - MIR SINE MIR -60 148 34 837 292 80 46 chr12 13210014 13210534 -130575921 - L2 LINE L2 -3 3269 2726 2336 67 10 6 chr12 13210611 13210923 -130575532 + AluSp SINE Alu 1 313 0 1540 145 24 85 chr12 13211921 13212153 -130574302 + AluJo SINE Alu 1 245 -67 2223 93 3 3 chr12 13212153 13212455 -130574000 - AluSx SINE Alu -10 302 1 1540 145 24 85 chr12 13212455 13212510 -130573945 + AluJo SINE Alu 245 268 -44 1675 93 0 4 chr12 13212510 13212736 -130573719 - AluSg SINE Alu -84 226 2 1540 145 24 85 chr12 13212736 13212778 -130573677 + AluJo SINE Alu 268 311 -1 2585 285 70 5 chr12 13212951 13213828 -130572627 + L1ME1 LINE L1 36 969 -5427 2209 86 7 7 chr12 13213835 13214137 -130572318 + AluSx SINE Alu 1 302 -10 569 160 0 47 chr12 13214244 13214350 -130572105 + FRAM SINE Alu 60 160 -16 522 256 52 62 chr12 13214354 13214459 -130571996 + L1ME1 LINE L1 4524 4628 -1587 2292 91 0 0 chr12 13214459 13214757 -130571698 + AluSq SINE Alu 1 298 -15 522 256 52 62 chr12 13214757 13214818 -130571637 + L1ME1 LINE L1 4628 4690 -1525 221 0 35 0 chr12 13214818 13214847 -130571608 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 522 256 52 62 chr12 13214847 13214890 -130571565 + L1ME1 LINE L1 4690 4732 -1483 2924 218 41 33 chr12 13214947 13215088 -130571367 + L1ME1 LINE L1 4967 5105 -1130 2430 58 0 10 chr12 13215088 13215398 -130571057 + AluY SINE Alu 1 307 -4 2924 218 41 33 chr12 13215398 13215656 -130570799 + L1ME1 LINE L1 5105 5360 -875 2314 98 0 0 chr12 13215656 13215962 -130570493 + AluSx SINE Alu 1 306 -6 2924 218 41 33 chr12 13215962 13216753 -130569702 + L1ME1 LINE L1 5360 6177 -58 449 217 14 51 chr12 13216659 13216797 -130569658 + L1MA10 LINE L1 6244 6376 -27 * 1787 159 0 0 chr12 13216875 13217152 -130569303 - AluJo SINE Alu -35 277 1 2289 74 3 7 chr12 13217158 13217457 -130568998 - AluSp SINE Alu -15 298 1 2053 103 3 39 chr12 13217458 13217491 -130568964 - AluSx SINE Alu -11 301 268 2419 65 3 3 chr12 13217491 13217798 -130568657 + AluSp SINE Alu 1 307 -6 2053 103 3 39 chr12 13217798 13218076 -130568379 - AluSx SINE Alu -44 268 1 268 286 86 9 chr12 13218607 13218712 -130567743 - MIR SINE MIR -61 201 89 608 220 68 0 chr12 13219493 13219611 -130566844 - FLAM_A SINE Alu -16 126 1 2036 102 3 53 chr12 13219621 13219943 -130566512 - AluSx SINE Alu -6 306 1 249 191 0 0 chr12 13219958 13220000 -130566455 + L2 LINE L2 3186 3227 -86 742 150 0 65 chr12 13220032 13220098 -130566357 - MER45A DNA AcHobo -1413 168 99 2198 69 0 17 chr12 13220098 13220410 -130566045 - AluSx SINE Alu 0 307 1 742 150 0 65 chr12 13220410 13220495 -130565960 - MER45A DNA AcHobo -1482 99 26 192 188 0 0 chr12 13220530 13220562 -130565893 - L2 LINE L2 -20 3252 3221 432 68 27 14 chr12 13222458 13222532 -130563923 + (GGA)n Simple_repeat Simple_repeat 2 76 0 738 128 0 27 chr12 13222547 13222695 -130563760 + (GGAA)n Simple_repeat Simple_repeat 4 147 0 188 351 135 42 chr12 13222771 13223104 -130563351 - L2 LINE L2 -1984 1330 967 186 43 0 0 chr12 13223174 13223197 -130563258 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 920 176 0 0 chr12 13223201 13223349 -130563106 - AluJo/FRAM SINE Alu -30 282 135 2063 153 0 0 chr12 13223350 13223664 -130562791 - 7SLRNA srpRNA srpRNA -6 314 1 1502 156 54 14 chr12 13223747 13224023 -130562432 - AluJb SINE Alu -21 291 5 461 244 61 0 chr12 13224052 13224167 -130562288 - L1ME3A LINE L1 -317 5853 5732 556 188 27 0 chr12 13224186 13224298 -130562157 - L1MD3 LINE L1 -8 7987 7873 1731 176 29 26 chr12 13224303 13224403 -130562052 + MER7A DNA MER2_type 1 99 -2939 2259 103 3 0 chr12 13224403 13224714 -130561741 - AluSx SINE Alu 0 312 1 1731 176 29 26 chr12 13224714 13224954 -130561501 + MER7A DNA MER2_type 99 340 -6 1916 134 0 13 chr12 13224985 13225291 -130561164 + AluSx SINE Alu 1 302 -10 1905 112 42 11 chr12 13225308 13225593 -130560862 + AluSx SINE Alu 1 294 -18 2332 51 14 0 chr12 13225593 13225885 -130560570 + AluY SINE Alu 1 296 -15 275 161 36 0 chr12 13225936 13225992 -130560463 - AluJb SINE Alu -1 301 244 1067 189 0 11 chr12 13225992 13226183 -130560272 - AluJb SINE Alu -101 211 23 1869 130 3 36 chr12 13226227 13226535 -130559920 - AluSx SINE Alu -14 298 1 207 0 0 0 chr12 13226535 13226558 -130559897 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 209 195 0 0 chr12 13226597 13226638 -130559817 + T-rich Low_complexity Low_complexity 2 42 0 423 294 182 18 chr12 13226714 13226989 -130559466 - L1ME3A LINE L1 -588 5576 5257 2002 112 0 4 chr12 13226989 13227267 -130559188 - AluSx SINE Alu -18 294 18 300 183 0 0 chr12 13227493 13227526 -130558929 + A-rich Low_complexity Low_complexity 1 33 -38 2123 113 3 3 chr12 13227526 13227835 -130558620 + AluSg SINE Alu 1 309 -1 300 183 0 0 chr12 13227835 13227872 -130558583 + A-rich Low_complexity Low_complexity 32 71 0 628 249 140 56 chr12 13227971 13228031 -130558424 + L2 LINE L2 2839 2893 -420 2034 130 0 3 chr12 13228031 13228330 -130558125 - AluSx SINE Alu -14 298 1 628 249 140 56 chr12 13228330 13228572 -130557883 + L2 LINE L2 2893 3172 -141 1720 182 0 3 chr12 13228572 13228880 -130557575 + AluJb SINE Alu 1 307 -5 628 249 140 56 chr12 13228880 13228897 -130557558 + L2 LINE L2 3172 3186 -127 591 161 99 184 chr12 13228906 13229145 -130557310 + MER33 DNA MER1_type 2 260 -2325 720 164 55 16 chr12 13229145 13229273 -130557182 - FLAM_C SINE Alu 0 133 1 943 195 18 0 chr12 13229280 13229449 -130557006 - FAM SINE Alu -1 174 3 591 161 99 184 chr12 13229449 13229554 -130556901 + MER33 DNA MER1_type 266 324 0 235 282 204 10 chr12 13229556 13229659 -130556796 + L2 LINE L2 3191 3313 0 411 227 116 63 chr12 13229733 13229839 -130556616 - L1MB8 LINE L1 -16 6162 6063 1794 130 0 25 chr12 13229839 13230124 -130556331 - AluJo SINE Alu -34 278 1 411 227 116 63 chr12 13230124 13230224 -130556231 - L1MB8 LINE L1 -115 6063 5945 2286 79 0 28 chr12 13230291 13230608 -130555847 + AluSx SINE Alu 1 308 -4 1442 174 49 14 chr12 13230714 13231002 -130555453 + AluJb SINE Alu 1 298 -14 32 103 0 0 chr12 13231489 13231605 -130554850 + GC_rich Low_complexity Low_complexity 1 116 0 517 236 89 31 chr12 13233047 13233265 -130553190 - Charlie8 DNA MER1_type -992 1425 68 2007 95 50 3 chr12 13233287 13233570 -130552885 + AluSx SINE Alu 1 296 -16 1320 87 0 0 chr12 13233718 13233891 -130552564 - AluSg/x SINE Alu -9 301 129 659 215 21 16 chr12 13233891 13234077 -130552378 - Charlie1 DNA MER1_type -11 2750 2564 2151 115 3 0 chr12 13234085 13234390 -130552065 - AluSx SINE Alu -6 306 1 2260 85 0 0 chr12 13234399 13234693 -130551762 - AluY SINE Alu -17 294 1 1749 159 3 50 chr12 13234782 13235105 -130551350 - AluJb SINE Alu -6 306 1 652 290 125 9 chr12 13235185 13235409 -130551046 + MIR SINE MIR 3 252 -10 189 0 0 0 chr12 13235414 13235435 -130551020 + (TTA)n Simple_repeat Simple_repeat 1 21 0 552 252 162 17 chr12 13235448 13235682 -130550773 - MER102b DNA MER1_type -23 318 51 2199 129 3 0 chr12 13235716 13236011 -130550444 + AluSg SINE Alu 1 296 -14 1984 145 3 0 chr12 13236042 13236348 -130550107 + AluSx SINE Alu 1 307 0 275 189 0 0 chr12 13236866 13236919 -130549536 - Charlie8 DNA MER1_type -1003 1414 1362 428 217 0 108 chr12 13236944 13237073 -130549382 - Charlie8 DNA MER1_type -2205 212 98 549 255 122 16 chr12 13237073 13237126 -130549329 - MER3 DNA MER1_type -1 208 162 2181 102 0 7 chr12 13237126 13237435 -130549020 + AluSx SINE Alu 1 307 0 549 255 122 16 chr12 13237435 13237568 -130548887 - MER3 DNA MER1_type -47 162 1 2580 74 0 0 chr12 13237605 13237916 -130548539 - AluY SINE Alu 0 311 1 1975 145 3 3 chr12 13237916 13238212 -130548243 - AluSx SINE Alu -5 307 12 430 161 0 23 chr12 13238422 13238509 -130547946 - FRAM SINE Alu -77 99 15 332 158 0 0 chr12 13238514 13238571 -130547884 + Alu SINE Alu 244 300 -2 1562 147 0 0 chr12 13238862 13239080 -130547375 - AluJb SINE Alu -11 301 84 1965 164 3 0 chr12 13239084 13239251 -130547204 - AluJb SINE Alu -12 300 130 201 39 0 0 chr12 13239251 13239277 -130547178 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1965 164 3 0 chr12 13239277 13239408 -130547047 - AluJb SINE Alu -182 130 1 254 273 57 0 chr12 13239557 13239645 -130546810 + MIR SINE MIR 27 119 -89 544 223 19 64 chr12 13239648 13239805 -130546650 + MER91B DNA MER1_type 1 150 -40 2213 120 0 0 chr12 13239980 13240272 -130546183 - AluSx SINE Alu -16 296 5 1060 211 7 76 chr12 13240426 13240537 -130545918 + AluJo SINE Alu 27 144 -168 414 0 0 0 chr12 13240537 13240583 -130545872 + (CA)n Simple_repeat Simple_repeat 2 47 0 297 0 0 0 chr12 13240582 13240615 -130545840 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 1060 211 7 76 chr12 13240583 13240807 -130545648 + AluJo SINE Alu 144 309 -3 1394 255 26 68 chr12 13240828 13241369 -130545086 - L1MC4 LINE L1 -167 7875 7358 1729 151 0 0 chr12 13241529 13241780 -130544675 + AluJb SINE Alu 50 300 -12 2121 102 20 14 chr12 13241783 13242076 -130544379 + AluSq SINE Alu 3 297 -16 338 77 26 51 chr12 13242077 13242155 -130544300 + (GGAGA)n Simple_repeat Simple_repeat 4 79 0 525 274 18 55 chr12 13242320 13242539 -130543916 + L2 LINE L2 3086 3296 -17 327 330 8 17 chr12 13242694 13242812 -130543643 + L2 LINE L2 3197 3313 0 331 263 234 6 chr12 13242915 13243090 -130543365 + L2 LINE L2 3086 3300 -13 922 196 34 0 chr12 13243361 13243540 -130542915 + AluSg/x SINE Alu 107 291 -21 1519 176 73 55 chr12 13243572 13243861 -130542594 + L1MB8 LINE L1 4734 5035 -1111 2090 69 62 11 chr12 13243861 13244137 -130542318 - AluSg1 SINE Alu -17 292 3 1519 176 73 55 chr12 13244137 13244285 -130542170 + L1MB8 LINE L1 5035 5179 -967 1307 189 8 0 chr12 13244286 13244535 -130541920 + L1MB8 LINE L1 5444 5694 -490 408 182 13 0 chr12 13244536 13244613 -130541842 + AluJo SINE Alu 2 79 -233 * 497 174 0 0 chr12 13244611 13244697 -130541758 - AluSg/x SINE Alu -14 296 211 3518 106 4 4 chr12 13244697 13245206 -130541249 - MER9 LTR ERVK 0 511 3 1607 119 41 0 chr12 13245206 13245424 -130541031 - AluSq SINE Alu -86 227 1 1266 148 9 36 chr12 13245431 13245654 -130540801 + AluJo SINE Alu 75 291 -21 2169 175 36 30 chr12 13245657 13246155 -130540300 + L1MB8 LINE L1 5678 6178 0 2326 124 0 0 chr12 13246168 13246475 -130539980 + AluSx SINE Alu 1 307 -5 1927 155 10 0 chr12 13246482 13246778 -130539677 + AluJo SINE Alu 1 299 -13 992 221 39 48 chr12 13247812 13248147 -130538308 + L2 LINE L2 2941 3272 0 2222 119 0 10 chr12 13248179 13248489 -130537966 - AluSx SINE Alu -5 307 1 2218 135 0 0 chr12 13249330 13249627 -130536828 - AluSx SINE Alu -15 297 1 3424 213 82 18 chr12 13249889 13250023 -130536432 + L1MB7 LINE L1 5016 5140 -1044 2113 136 10 0 chr12 13250023 13250331 -130536124 + AluJo SINE Alu 1 311 -1 3424 213 82 18 chr12 13250331 13251259 -130535196 + L1MB7 LINE L1 5140 6139 -45 2008 142 14 7 chr12 13251261 13251550 -130534905 + AluSx SINE Alu 1 291 -21 2276 109 3 10 chr12 13251553 13251864 -130534591 + AluSg1 SINE Alu 1 309 0 960 126 0 28 chr12 13251880 13252023 -130534432 + FLAM_C SINE Alu 1 139 -4 643 135 0 19 chr12 13252101 13252205 -130534250 - AluJb SINE Alu -126 186 85 1883 157 0 26 chr12 13252531 13252836 -130533619 - AluJb SINE Alu -15 297 1 203 96 0 135 chr12 13255086 13255113 -130531342 + (A)n Simple_repeat Simple_repeat 1 19 -26 2163 125 3 16 chr12 13255113 13255426 -130531029 + AluSx SINE Alu 1 309 -3 203 96 0 135 chr12 13255426 13255450 -130531005 + (A)n Simple_repeat Simple_repeat 19 45 0 310 187 116 123 chr12 13255543 13255615 -130530840 - MER103 DNA DNA -12 154 83 2258 96 7 3 chr12 13255615 13255907 -130530548 - AluSx SINE Alu -18 294 2 310 187 116 123 chr12 13255907 13255989 -130530466 - MER103 DNA DNA -83 83 1 271 265 122 10 chr12 13256410 13256508 -130529947 + MIR3 SINE MIR 10 118 -90 1440 136 139 12 chr12 13256687 13256945 -130529510 + AluSg1 SINE Alu 9 299 -10 243 133 0 0 chr12 13257000 13257045 -130529410 + (A)n Simple_repeat Simple_repeat 1 45 0 2600 81 0 0 chr12 13257050 13257359 -130529096 + AluSg SINE Alu 1 309 -1 2223 80 49 11 chr12 13257681 13257967 -130528488 + AluSx SINE Alu 1 297 -15 189 258 45 15 chr12 13258564 13258630 -130527825 + L3 LINE CR1 1085 1152 -425 304 304 36 41 chr12 13258657 13258851 -130527604 + L1MB4 LINE L1 5552 5744 -377 2209 140 7 0 chr12 13258857 13259164 -130527291 + AluSx SINE Alu 1 309 -3 418 177 10 10 chr12 13259167 13259263 -130527192 + GA-rich Low_complexity Low_complexity 4 99 0 307 238 19 57 chr12 13259263 13259368 -130527087 + HAL1 LINE L1 1114 1214 -1293 373 306 169 0 chr12 13259460 13259584 -130526871 + L3 LINE CR1 1166 1310 -267 839 141 7 42 chr12 13259584 13259726 -130526729 - AluJo SINE Alu -62 250 114 255 241 46 58 chr12 13259789 13259876 -130526579 + L2 LINE L2 3187 3272 0 2244 107 37 0 chr12 13259929 13260227 -130526228 - AluSx SINE Alu -3 309 1 892 222 0 6 chr12 13260247 13260423 -130526032 - FAM SINE Alu 0 175 1 1737 145 39 21 chr12 13260426 13260709 -130525746 - AluJo SINE Alu -12 300 13 2076 137 0 10 chr12 13260749 13261048 -130525407 - AluSx SINE Alu -16 296 1 189 270 0 68 chr12 13261188 13261262 -130525193 + MIR3 SINE MIR 4 72 -136 2041 55 0 0 chr12 13261422 13261659 -130524796 + AluY SINE Alu 74 310 -1 2361 99 3 0 chr12 13261716 13262020 -130524435 + AluSg SINE Alu 1 305 -5 1117 126 0 25 chr12 13262112 13262293 -130524162 - AluSg/x SINE Alu 0 310 132 1524 102 19 0 chr12 13262293 13262499 -130523956 - AluSc SINE Alu -8 301 92 251 86 0 0 chr12 13262600 13262635 -130523820 - Tigger4(Zombi) DNA MER2_type -221 2510 2476 * 375 147 93 13 chr12 13262628 13262703 -130523752 - Tigger4(Zombi) DNA MER2_type -2650 81 1 2052 184 37 31 chr12 13262703 13263042 -130523413 + L1MB4 LINE L1 5720 6064 -116 1996 133 0 17 chr12 13263042 13263342 -130523113 + AluJo SINE Alu 4 298 -14 2052 184 37 31 chr12 13263342 13263458 -130522997 + L1MB4 LINE L1 6064 6178 -2 226 308 31 0 chr12 13263465 13263530 -130522925 - MIR SINE MIR 0 262 196 2586 66 0 0 chr12 13263530 13263835 -130522620 + AluY SINE Alu 1 305 -6 306 216 5 197 chr12 13263843 13264061 -130522394 - L2 LINE L2 -830 2484 2309 425 237 86 14 chr12 13264667 13264806 -130521649 - MER46C DNA MER2_type -107 231 83 601 185 25 0 chr12 13265090 13265209 -130521246 + FLAM_C SINE Alu 2 123 -20 2224 122 10 0 chr12 13265216 13265520 -130520935 + AluSx SINE Alu 5 311 -1 204 149 0 43 chr12 13265905 13265952 -130520503 - MIR SINE MIR -70 192 148 345 302 34 20 chr12 13266313 13266462 -130519993 + L1MB2 LINE L1 5548 5698 -423 377 139 14 0 chr12 13266462 13266534 -130519921 + L2 LINE L2 2713 2785 -529 1857 137 0 0 chr12 13266645 13266901 -130519554 + AluSx SINE Alu 1 256 -56 1603 181 20 30 chr12 13266929 13267066 -130519389 + AluJo SINE Alu 1 138 -174 2375 108 0 0 chr12 13267066 13267372 -130519083 + AluSx SINE Alu 1 306 -6 1603 181 20 30 chr12 13267372 13267538 -130518917 + AluJo SINE Alu 138 301 -11 610 191 61 0 chr12 13267549 13267680 -130518775 + MER33 DNA MER1_type 2 140 -184 2900 175 52 18 chr12 13267686 13268120 -130518335 + L1MB4 LINE L1 5492 5956 -224 2463 63 0 38 chr12 13268120 13268435 -130518020 + AluY SINE Alu 1 303 -8 2900 175 52 18 chr12 13268435 13268629 -130517826 + L1MB4 LINE L1 5956 6142 -38 2239 117 0 10 chr12 13268631 13268938 -130517517 + AluSx SINE Alu 1 304 -8 2221 155 38 31 chr12 13268939 13269290 -130517165 + L1MB2 LINE L1 5679 6035 -136 2460 76 0 7 chr12 13269290 13269591 -130516864 + AluY SINE Alu 2 300 -11 2221 155 38 31 chr12 13269591 13269684 -130516771 + L1MB2 LINE L1 6035 6126 -45 2042 132 0 11 chr12 13269684 13269965 -130516490 + AluJb SINE Alu 1 278 -34 188 180 131 16 chr12 13270215 13270276 -130516179 + MER5A DNA MER1_type 9 76 -113 2217 110 0 0 chr12 13270524 13270838 -130515617 + AluSg SINE Alu 1 314 0 300 236 171 62 chr12 13270880 13271138 -130515317 + MER46C DNA MER2_type 13 298 -40 2394 105 0 0 chr12 13271570 13271874 -130514581 + AluSx SINE Alu 1 304 -8 1667 171 0 59 chr12 13271884 13272206 -130514249 + AluJb SINE Alu 1 303 -9 545 272 46 20 chr12 13272249 13272444 -130514011 + MIR SINE MIR 63 262 0 236 328 0 0 chr12 13273128 13273195 -130513260 - L2 LINE L2 -246 3067 3001 451 176 22 0 chr12 13273202 13273293 -130513162 + FRAM SINE Alu 72 164 -12 2430 101 3 0 chr12 13273293 13273599 -130512856 + AluSx SINE Alu 1 307 -5 1914 164 3 7 chr12 13273599 13273897 -130512558 + AluJb SINE Alu 1 298 -14 460 271 15 15 chr12 13273934 13274067 -130512388 + Tigger1 DNA MER2_type 31 163 -2255 * 1130 189 5 9 chr12 13274049 13274266 -130512189 + Tigger1 DNA MER2_type 2203 2418 0 2239 104 3 16 chr12 13274442 13274758 -130511697 + AluSp SINE Alu 2 313 0 241 231 88 0 chr12 13274762 13274853 -130511602 + L2 LINE L2 2417 2515 -799 282 185 46 0 chr12 13275096 13275161 -130511294 + MIR SINE MIR 58 125 -83 25 51 0 0 chr12 13275454 13275493 -130510962 + AT_rich Low_complexity Low_complexity 1 39 0 2269 103 3 0 chr12 13275543 13275834 -130510621 - AluSg SINE Alu -18 292 1 2703 56 0 0 chr12 13275844 13276149 -130510306 - AluY SINE Alu -6 305 1 2022 126 14 17 chr12 13276200 13276329 -130510126 + AluSx SINE Alu 5 133 -179 2301 115 3 0 chr12 13276329 13276634 -130509821 + AluSg SINE Alu 1 306 -4 2022 126 14 17 chr12 13276634 13276798 -130509657 + AluSx SINE Alu 133 297 -15 2248 96 16 19 chr12 13276824 13277136 -130509319 + AluSq SINE Alu 1 311 -2 325 163 62 38 chr12 13277321 13277401 -130509054 + HsTC2 DNA Tc2 6 87 -1811 236 324 6 62 chr12 13277746 13277897 -130508558 - MER5A DNA MER1_type -21 168 27 2112 131 6 13 chr12 13277897 13278209 -130508246 - AluJb SINE Alu -2 310 1 236 324 6 62 chr12 13278209 13278233 -130508222 - MER5A DNA MER1_type -162 27 3 228 300 43 0 chr12 13278301 13278371 -130508084 - L2 LINE L2 0 3272 3200 697 296 12 16 chr12 13278451 13278701 -130507754 + L1ME2 LINE L1 5816 6064 -100 1301 163 26 26 chr12 13278746 13278979 -130507476 - AluJb SINE Alu -79 233 1 1997 97 0 40 chr12 13279034 13279332 -130507123 + AluSx SINE Alu 1 286 -26 183 80 0 0 chr12 13279429 13279454 -130507001 + (TA)n Simple_repeat Simple_repeat 2 26 0 312 302 67 44 chr12 13280150 13280375 -130506080 - MIR SINE MIR 0 262 33 196 237 51 17 chr12 13280631 13280690 -130505765 + MIR SINE MIR 109 169 -93 411 279 18 96 chr12 13280757 13280976 -130505479 + L1MC5 LINE L1 7730 7931 -30 2113 129 3 0 chr12 13280977 13281272 -130505183 + AluSx SINE Alu 1 296 -16 205 191 0 0 chr12 13281322 13281364 -130505091 + A-rich Low_complexity Low_complexity 1 42 0 759 174 8 0 chr12 13281365 13281497 -130504958 + FLAM_C SINE Alu 1 133 0 1923 162 7 3 chr12 13281512 13281820 -130504635 + AluSx SINE Alu 1 309 -3 226 262 113 50 chr12 13281823 13281964 -130504491 - MIR SINE MIR 0 262 113 2326 66 3 14 chr12 13281986 13282274 -130504181 - AluSx SINE Alu -17 295 11 274 228 252 32 chr12 13282398 13282521 -130503934 - MIR SINE MIR 0 262 113 434 265 59 15 chr12 13282753 13282889 -130503566 - MIR SINE MIR -65 197 56 459 286 53 12 chr12 13283009 13283180 -130503275 - MIR SINE MIR -78 184 7 1904 149 7 3 chr12 13283357 13283653 -130502802 + AluJo SINE Alu 1 297 -15 367 251 217 50 chr12 13283682 13283981 -130502474 + L1MC4a LINE L1 5580 5928 -1880 2094 104 0 28 chr12 13283991 13284304 -130502151 - AluSx SINE Alu 0 305 1 210 187 22 0 chr12 13285897 13285957 -130500498 + MIR SINE MIR 109 168 -94 1816 168 7 3 chr12 13286197 13286506 -130499949 - AluJo SINE Alu -2 310 1 1748 112 0 0 chr12 13286524 13286765 -130499690 + AluSx SINE Alu 57 297 -15 285 216 70 0 chr12 13286882 13286964 -130499491 - MIR SINE MIR -58 150 75 336 221 0 0 chr12 13287529 13287597 -130498858 + MIR SINE MIR 80 147 -115 184 86 32 75 chr12 13288971 13289064 -130497391 + (TTGTG)n Simple_repeat Simple_repeat 3 91 0 184 208 14 14 chr12 13289191 13289263 -130497192 + CT-rich Low_complexity Low_complexity 2 73 0 192 240 33 83 chr12 13289264 13289385 -130497070 + L2 LINE L2 1606 1720 -1594 912 243 36 67 chr12 13289387 13289836 -130496619 + L1MC5 LINE L1 7494 7928 -33 1863 127 22 0 chr12 13289855 13290176 -130496279 + AluSx SINE Alu 1 327 0 522 241 321 29 chr12 13290273 13290579 -130495876 + L2 LINE L2 2891 3293 -20 743 143 109 0 chr12 13290579 13290698 -130495757 - FLAM_C SINE Alu 0 133 2 1685 149 0 4 chr12 13290711 13290972 -130495483 - AluJb SINE Alu -15 297 38 2015 129 0 26 chr12 13291123 13291426 -130495029 + AluSx SINE Alu 1 295 -17 1982 122 0 48 chr12 13291429 13291740 -130494715 + AluSx SINE Alu 1 296 -16 2418 60 0 19 chr12 13291741 13292058 -130494397 + AluY SINE Alu 1 311 0 3348 172 19 39 chr12 13292176 13292241 -130494214 + LTR26 LTR ERV1 1 66 -537 2291 107 3 0 chr12 13292241 13292551 -130493904 + AluSx SINE Alu 1 311 -1 3348 172 19 39 chr12 13292551 13293100 -130493355 + LTR26 LTR ERV1 66 603 0 281 248 129 0 chr12 13293321 13293422 -130493033 + LTR16A1 LTR ERVL 81 194 -263 1195 152 0 86 chr12 13293422 13293622 -130492833 + AluJo SINE Alu 83 260 -52 1934 131 0 44 chr12 13293622 13293942 -130492513 - AluJb SINE Alu -6 306 1 1195 152 0 86 chr12 13293942 13293985 -130492470 + AluJo SINE Alu 260 305 -7 1053 251 86 29 chr12 13294107 13294458 -130491997 - MLT1H LTR MaLR -2 547 177 2206 122 0 0 chr12 13294464 13294776 -130491679 - AluSx SINE Alu 0 312 1 257 197 15 0 chr12 13294834 13294900 -130491555 + L2 LINE L2 2545 2611 -703 512 226 5 0 chr12 13294935 13295059 -130491396 + MIR SINE MIR 22 147 -62 1085 152 0 0 chr12 13295060 13295224 -130491231 + FRAM SINE Alu 1 160 -16 261 264 0 0 chr12 13295229 13295282 -130491173 + AluJ/monomer SINE Alu 3 55 -246 1888 141 3 10 chr12 13295282 13295587 -130490868 + AluSx SINE Alu 1 303 -9 1757 161 26 7 chr12 13295590 13295895 -130490560 + AluSx SINE Alu 2 312 0 1692 164 30 10 chr12 13296035 13296340 -130490115 + AluSx SINE Alu 1 311 -1 219 288 25 51 chr12 13296343 13296461 -130489994 + MIR SINE MIR 136 250 -12 355 318 117 7 chr12 13296530 13296684 -130489771 - MIR SINE MIR -81 181 11 246 372 20 14 chr12 13296669 13296817 -130489638 + L2 LINE L2 2599 2747 -567 * 928 223 141 41 chr12 13296824 13297192 -130489263 + L1MC4 LINE L1 7637 8041 -1 2253 163 8 122 chr12 13297212 13297280 -130489175 + L1MB7 LINE L1 5629 5703 -481 1991 116 3 23 chr12 13297280 13297590 -130488865 + AluSx SINE Alu 5 308 -4 2253 163 8 122 chr12 13297590 13297780 -130488675 + L1MB7 LINE L1 5703 5913 -271 2316 79 13 0 chr12 13297780 13298085 -130488370 - AluSp SINE Alu -4 309 1 2253 163 8 122 chr12 13298085 13298394 -130488061 + L1MB7 LINE L1 5913 6255 71 788 187 0 15 chr12 13298394 13298528 -130487927 + FLAM_A SINE Alu 1 132 -1 1732 109 113 0 chr12 13298530 13298805 -130487650 + AluSp SINE Alu 1 306 -7 2253 163 8 122 chr12 13298805 13298832 -130487623 + L1MB7 LINE L1 6132 6160 -24 1989 136 3 3 chr12 13298836 13299138 -130487317 - AluSx SINE Alu -10 302 1 1873 160 0 7 chr12 13299378 13299678 -130486777 + AluJb SINE Alu 1 298 -14 2090 103 34 0 chr12 13299686 13299978 -130486477 + AluSx SINE Alu 1 302 -10 853 151 126 65 chr12 13299982 13300022 -130486433 + MER21B LTR ERV1 602 638 -225 1944 118 6 32 chr12 13300022 13300336 -130486119 + AluSx SINE Alu 1 306 -6 1983 112 0 36 chr12 13300336 13300638 -130485817 + AluSx SINE Alu 5 297 -15 853 151 126 65 chr12 13300638 13300795 -130485660 + MER21B LTR ERV1 637 812 -51 297 287 59 15 chr12 13300881 13301017 -130485438 + L2 LINE L2 3030 3171 -101 21 36 0 0 chr12 13301192 13301220 -130485235 + AT_rich Low_complexity Low_complexity 1 28 0 1442 152 21 110 chr12 13301220 13301388 -130485067 - AluYb8 SINE Alu -19 299 172 2333 83 0 10 chr12 13301388 13301701 -130484754 - AluY SINE Alu -1 310 1 1442 152 21 110 chr12 13301701 13301860 -130484595 - AluYb8 SINE Alu -146 172 1 2047 134 3 6 chr12 13301875 13302189 -130484266 - AluSp SINE Alu 0 313 1 2030 101 0 0 chr12 13302203 13302479 -130483976 - AluSg SINE Alu -30 280 5 2056 118 0 3 chr12 13302553 13302850 -130483605 - AluSq SINE Alu -17 296 1 575 179 24 0 chr12 13302850 13302973 -130483482 - L1M3 LINE L1 -689 5491 5366 635 220 23 0 chr12 13303148 13303280 -130483175 + MIR SINE MIR 82 216 -46 2228 78 0 7 chr12 13303295 13303588 -130482867 + AluSg1 SINE Alu 1 291 -18 1257 164 0 0 chr12 13303591 13303792 -130482663 + AluJb SINE Alu 39 239 -73 1043 100 0 0 chr12 13303792 13303932 -130482523 + AluSg/x SINE Alu 156 295 -15 2066 123 7 0 chr12 13303934 13304236 -130482219 + AluSc SINE Alu 1 304 -5 2462 69 0 0 chr12 13304337 13304643 -130481812 + AluY SINE Alu 1 306 -5 2306 97 0 0 chr12 13304655 13304964 -130481491 + AluSc SINE Alu 1 309 0 388 288 86 40 chr12 13305039 13305077 -130481378 + MIR SINE MIR 1 36 -226 1257 170 85 15 chr12 13305077 13305348 -130481107 + AluJb SINE Alu 4 293 -19 388 288 86 40 chr12 13305348 13305507 -130480948 + MIR SINE MIR 36 207 -55 396 156 16 0 chr12 13305618 13305682 -130480773 - AluS SINE Alu -238 65 1 2126 84 27 3 chr12 13306427 13306725 -130479730 - AluSx SINE Alu -7 305 1 309 318 71 0 chr12 13306850 13306976 -130479479 - L1MC4a LINE L1 -1952 5856 5722 2378 71 0 3 chr12 13307892 13308222 -130478233 - AluSp SINE Alu 0 313 1 228 305 144 17 chr12 13308279 13308397 -130478058 - MIR SINE MIR -58 150 18 187 163 125 113 chr12 13308356 13308436 -130478019 + MIR SINE MIR 41 121 -87 * 2052 125 59 14 chr12 13308876 13309898 -130476557 + AluSq SINE Alu 1 299 -14 202 161 179 18 chr12 13309917 13309973 -130476482 - MIR SINE MIR -87 121 57 2054 124 3 0 chr12 13310008 13310307 -130476148 - AluSp SINE Alu -13 300 1 1947 128 3 3 chr12 13310311 13310608 -130475847 - AluSx SINE Alu -15 297 1 314 265 0 24 chr12 13310727 13310810 -130475645 - L2 LINE L2 -4 3309 3229 234 299 17 51 chr12 13311199 13311316 -130475139 + MIR SINE MIR 71 183 -79 189 74 0 0 chr12 13311487 13311514 -130474941 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2196 73 3 10 chr12 13311516 13311804 -130474651 - AluSq SINE Alu -25 288 3 1214 143 9 9 chr12 13311806 13311971 -130474484 - AluSg/x SINE Alu -12 298 131 2182 107 10 0 chr12 13311971 13312280 -130474175 - AluSx SINE Alu 0 312 1 1214 143 9 9 chr12 13312280 13312330 -130474125 - AluSg/x SINE Alu -178 132 83 973 183 104 71 chr12 13312330 13312570 -130473885 - AluSq SINE Alu -63 250 3 2427 140 7 30 chr12 13312593 13312667 -130473788 - L1PA16 LINE L1 -64 6102 6028 2119 123 0 0 chr12 13312667 13312968 -130473487 - AluSg SINE Alu -9 301 1 2427 140 7 30 chr12 13312968 13313178 -130473277 - L1PA16 LINE L1 -138 6028 5825 1983 123 0 0 chr12 13313178 13313492 -130472963 - AluSx SINE Alu 0 314 1 2427 140 7 30 chr12 13313492 13313639 -130472816 - L1PA16 LINE L1 -341 5825 5676 627 253 145 5 chr12 13313721 13313942 -130472513 - MIR SINE MIR -1 261 10 1271 142 52 0 chr12 13313957 13314168 -130472287 - AluJo SINE Alu -6 306 85 26 21 0 42 chr12 13314168 13314191 -130472264 + AT_rich Low_complexity Low_complexity 1 23 -23 2213 90 0 0 chr12 13314191 13314479 -130471976 - AluSq SINE Alu -25 288 1 26 21 0 42 chr12 13314479 13314503 -130471952 + AT_rich Low_complexity Low_complexity 23 46 0 700 103 0 0 chr12 13314587 13314720 -130471735 + AluSg/x SINE Alu 182 314 0 255 256 98 12 chr12 13314738 13314820 -130471635 - L2 LINE L2 0 3313 3225 192 306 93 9 chr12 13314828 13314936 -130471519 + L2 LINE L2 3146 3262 -10 25 0 0 0 chr12 13315523 13315548 -130470907 + GC_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 13315680 13315712 -130470743 + (GGA)n Simple_repeat Simple_repeat 1 32 0 30 0 0 0 chr12 13315766 13315796 -130470659 + AT_rich Low_complexity Low_complexity 1 30 0 204 164 0 36 chr12 13315818 13315873 -130470582 + G-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr12 13315921 13315942 -130470513 + GC_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr12 13316224 13316246 -130470209 + (T)n Simple_repeat Simple_repeat 1 22 0 3407 141 46 22 chr12 13416607 13416880 -130369575 - MER7C DNA MER2_type -2426 602 337 2557 65 0 7 chr12 13416880 13417190 -130369265 + AluY SINE Alu 1 308 -3 3407 141 46 22 chr12 13417190 13417504 -130368951 - MER7C DNA MER2_type -2691 337 1 851 220 0 12 chr12 13417793 13417966 -130368489 + MER5B DNA MER1_type 7 177 -1 633 209 23 0 chr12 13418140 13418269 -130368186 + MER5A DNA MER1_type 2 133 -56 412 236 9 45 chr12 13419764 13419874 -130366581 + MIR SINE MIR 24 129 -79 4856 125 44 36 chr12 13420382 13421240 -130365215 - L1MA8 LINE L1 -25 6266 5402 1319 154 33 173 chr12 13421761 13422027 -130364428 + MLT1A2 LTR MaLR 11 198 -176 2357 96 0 0 chr12 13422027 13422328 -130364127 + AluSc SINE Alu 1 301 -8 1319 154 33 173 chr12 13422328 13422484 -130363971 + MLT1A2 LTR MaLR 198 374 0 366 232 20 0 chr12 13422518 13422617 -130363838 - HAL1 LINE L1 -1191 1316 1216 198 0 0 0 chr12 13422712 13422734 -130363721 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 441 233 99 80 chr12 13422816 13423042 -130363413 - MLT1L LTR MaLR -203 308 101 2210 122 0 6 chr12 13423119 13423430 -130363025 - AluSx SINE Alu -3 309 1 1160 294 123 61 chr12 13423439 13424554 -130361901 - HAL1 LINE L1 -1323 1184 1 2216 122 13 0 chr12 13425097 13425400 -130361055 - AluSx SINE Alu -5 307 1 740 251 69 0 chr12 13425816 13425991 -130360464 + L1MD1 LINE L1 589 775 -5765 * 5024 170 55 44 chr12 13425987 13426905 -130359550 + L1MD1 LINE L1 1480 2386 -4154 2065 136 7 0 chr12 13426905 13427199 -130359256 + AluSx SINE Alu 1 296 -16 5024 170 55 44 chr12 13427199 13427413 -130359042 + L1MD1 LINE L1 2386 2596 -3944 1562 164 11 28 chr12 13427413 13427700 -130358755 + AluJo SINE Alu 6 287 -25 5024 170 55 44 chr12 13427700 13427776 -130358679 + L1MD1 LINE L1 2596 2670 -3870 2081 122 0 3 chr12 13427776 13428063 -130358392 + AluSx SINE Alu 4 289 -23 5024 170 55 44 chr12 13428063 13428481 -130357974 + L1MD1 LINE L1 2670 3123 -3417 332 182 45 0 chr12 13428547 13428613 -130357842 - AluS SINE Alu -239 69 1 6615 204 32 33 chr12 13428613 13428796 -130357659 + L1MD1 LINE L1 3830 4012 -2624 1450 184 23 108 chr12 13428796 13429193 -130357262 - MLT1A1 LTR MaLR -2 363 1 6615 204 32 33 chr12 13429193 13431466 -130354989 + L1MD1 LINE L1 4012 6284 -352 2702 35 0 3 chr12 13431466 13431778 -130354677 + AluY SINE Alu 1 311 0 6615 204 32 33 chr12 13431778 13432131 -130354324 + L1MD1 LINE L1 6284 6636 0 390 214 22 129 chr12 13432188 13432366 -130354089 - MLT1H LTR MaLR -165 384 226 1752 123 0 4 chr12 13432380 13432623 -130353832 + AluSx SINE Alu 5 246 -66 2325 111 3 0 chr12 13432623 13432928 -130353527 + AluSq SINE Alu 1 307 -6 477 76 0 0 chr12 13432972 13433038 -130353417 + (CAGGA)n Simple_repeat Simple_repeat 4 69 0 209 111 83 0 chr12 13433038 13433074 -130353381 + polypurine Low_complexity Low_complexity 2 40 0 272 295 19 45 chr12 13433117 13433273 -130353182 - MLT1H LTR MaLR -375 174 23 543 206 0 0 chr12 13433440 13433615 -130352840 + (TG)n Simple_repeat Simple_repeat 2 176 0 663 169 0 0 chr12 13433635 13433807 -130352648 + (TG)n Simple_repeat Simple_repeat 2 173 0 780 175 0 0 chr12 13433824 13434097 -130352358 + (TG)n Simple_repeat Simple_repeat 1 273 0 2389 126 36 83 chr12 13434266 13434734 -130351721 - Tigger2 DNA MER2_type 0 2718 2273 465 152 0 0 chr12 13434725 13434791 -130351664 - Tigger2 DNA MER2_type -2651 67 2 * 385 296 44 7 chr12 13434975 13435110 -130351345 + MIR SINE MIR 110 249 -13 2351 76 3 3 chr12 13435193 13435495 -130350960 + AluSg SINE Alu 3 304 -6 1441 66 0 0 chr12 13436030 13436211 -130350244 + AluY SINE Alu 131 311 0 1350 64 25 136 chr12 13436445 13436680 -130349775 + MER30 DNA MER1_type 1 209 -21 461 267 181 33 chr12 13437159 13437429 -130349026 - L3 LINE CR1 -70 1507 1198 4432 134 18 1 chr12 13437845 13438507 -130347948 - L1MA7 LINE L1 0 6291 5619 897 243 7 45 chr12 13438836 13439082 -130347373 - MIR SINE MIR -7 255 15 2306 82 20 0 chr12 13439160 13439463 -130346992 - AluSp SINE Alu -4 309 1 769 329 60 7 chr12 13439484 13439767 -130346688 - L3 LINE CR1 -575 1002 705 517 274 42 99 chr12 13439779 13439969 -130346486 - MIR SINE MIR 0 262 90 2197 102 0 3 chr12 13439969 13440272 -130346183 + AluSx SINE Alu 1 302 -10 517 274 42 99 chr12 13440272 13440344 -130346111 - MIR SINE MIR -172 90 15 182 279 54 108 chr12 13440362 13440417 -130346038 - L3 LINE CR1 -894 683 627 2256 88 3 0 chr12 13440417 13440723 -130345732 + AluSg SINE Alu 1 307 -3 182 279 54 108 chr12 13440723 13440796 -130345659 - L3 LINE CR1 -950 627 562 203 358 37 0 chr12 13440824 13440905 -130345550 - MIR SINE MIR -120 142 59 296 356 205 8 chr12 13440993 13441232 -130345223 - L3 LINE CR1 -1058 519 234 1853 183 137 14 chr12 13441612 13442044 -130344411 + MER31A LTR ERV1 1 485 0 235 325 26 0 chr12 13442168 13442245 -130344210 - MIR SINE MIR -183 79 1 2200 72 3 23 chr12 13442296 13442600 -130343855 + AluSq SINE Alu 1 298 -15 791 179 98 98 chr12 13442717 13443124 -130343331 - LTR37A LTR ERV1 -1 425 19 2290 74 10 0 chr12 13443224 13443522 -130342933 + AluSp SINE Alu 1 301 -12 307 259 37 56 chr12 13443580 13443688 -130342767 + MIR SINE MIR 12 117 -145 1968 104 13 23 chr12 13443690 13443998 -130342457 - AluSx SINE Alu -5 307 3 1478 88 23 9 chr12 13444002 13444219 -130342236 - AluSx SINE Alu -11 301 82 2215 68 48 6 chr12 13444220 13444531 -130341924 + LTR7 LTR ERV1 125 448 -2 20842 89 15 23 chr12 13444533 13447552 -130338903 + HERVH LTR ERV1 1 2995 -4718 931 135 20 0 chr12 13447531 13447679 -130338776 + HERVH LTR ERV1 3140 3290 -4423 * 3512 103 4 6 chr12 13447669 13448172 -130338283 + HERVH LTR ERV1 3492 3993 -3720 4487 140 0 1 chr12 13448174 13448837 -130337618 + HERVH LTR ERV1 4488 5149 -2564 1424 130 19 0 chr12 13448838 13449054 -130337401 + HERVH LTR ERV1 5600 5819 -1894 * 2409 95 50 13 chr12 13449052 13449430 -130337025 + HERVH LTR ERV1 7322 7713 0 2394 92 148 5 chr12 13449430 13449822 -130336633 + LTR7 LTR ERV1 1 448 -2 522 137 0 0 chr12 13449824 13449897 -130336558 - AluSx SINE Alu -239 74 2 1168 134 69 56 chr12 13449900 13450131 -130336324 - AluJo SINE Alu -20 292 59 337 246 0 0 chr12 13450178 13450247 -130336208 + MIR SINE MIR 101 169 -93 1244 189 139 99 chr12 13450763 13450998 -130335457 - MER34B LTR ERV1 0 565 341 2123 110 0 13 chr12 13450998 13451308 -130335147 + AluSx SINE Alu 1 306 -6 1244 189 139 99 chr12 13451308 13451528 -130334927 - MER34B LTR ERV1 -224 341 86 2254 106 3 0 chr12 13451528 13451839 -130334616 - AluSx SINE Alu 0 312 1 1244 189 139 99 chr12 13451839 13451885 -130334570 - MER34B LTR ERV1 -479 86 43 370 274 116 0 chr12 13452304 13452450 -130334005 + L1ME LINE L1 5583 5745 -376 2355 62 17 0 chr12 13452464 13452756 -130333699 - AluY SINE Alu -12 299 3 793 114 0 0 chr12 13452811 13452925 -130333530 - AluSg/x SINE Alu -10 300 187 1968 134 0 3 chr12 13453016 13453314 -130333141 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 13453337 13453380 -130333075 - MER34B LTR ERV1 -466 99 58 1667 131 7 44 chr12 13453689 13453987 -130332468 - AluJb SINE Alu -19 293 7 180 77 0 0 chr12 13454117 13454143 -130332312 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1070 209 178 4 chr12 13454153 13454406 -130332049 - AluJo SINE Alu -4 298 2 22 0 0 0 chr12 13454406 13454428 -130332027 + AT_rich Low_complexity Low_complexity 1 22 0 2345 194 28 20 chr12 13454447 13454954 -130331501 - MER41B LTR ERV1 -9 597 100 502 168 0 65 chr12 13454983 13455090 -130331365 - AluJb SINE Alu -207 105 6 2353 52 0 29 chr12 13455166 13455473 -130330982 + AluY SINE Alu 1 298 -13 525 259 124 11 chr12 13456022 13456151 -130330304 + MIR SINE MIR 51 209 -53 2057 87 31 3 chr12 13456151 13456439 -130330016 + AluSx SINE Alu 1 296 -16 525 259 124 11 chr12 13456439 13456494 -130329961 + MIR SINE MIR 209 256 -6 1851 121 44 3 chr12 13458625 13458922 -130327533 - AluJo SINE Alu -2 310 2 318 167 0 0 chr12 13459305 13459365 -130327090 + (CA)n Simple_repeat Simple_repeat 1 60 0 484 167 0 192 chr12 13459736 13459970 -130326485 + MER53 DNA DNA 1 189 0 287 200 55 0 chr12 13459981 13460036 -130326419 - L2 LINE L2 0 3313 3256 257 35 0 0 chr12 13460039 13460068 -130326387 + tRNA-Lys-AAA tRNA tRNA 1 29 -47 184 148 315 0 chr12 13460069 13460123 -130326332 - L2 LINE L2 -46 3267 3197 2088 125 23 0 chr12 13460182 13460487 -130325968 - AluSx SINE Alu 0 312 1 694 194 0 22 chr12 13460552 13460686 -130325769 - AluJo SINE Alu -176 136 6 358 274 65 48 chr12 13460690 13460859 -130325596 - L1MC5 LINE L1 -298 7663 7489 1602 153 80 0 chr12 13460859 13461146 -130325309 - AluSg SINE Alu 0 310 1 358 274 65 48 chr12 13461146 13461162 -130325293 - L1MC5 LINE L1 -472 7489 7475 2271 87 6 0 chr12 13461162 13461473 -130324982 - AluSp SINE Alu 0 313 1 796 211 35 31 chr12 13461474 13461702 -130324753 - L1MC5 LINE L1 -432 7529 7301 231 332 47 1 chr12 13462611 13462732 -130323723 - MIR SINE MIR -17 191 61 1681 159 24 10 chr12 13463008 13463303 -130323152 + AluJo SINE Alu 1 299 -13 411 339 54 6 chr12 13463360 13463546 -130322909 - MIR SINE MIR -32 230 38 216 263 25 38 chr12 13463834 13463914 -130322541 + L2 LINE L2 2692 2770 -544 222 322 0 22 chr12 13463994 13464084 -130322371 + GA-rich Low_complexity Low_complexity 6 93 0 2088 105 3 0 chr12 13464548 13464842 -130321613 - AluSg SINE Alu -14 296 2 2264 65 7 3 chr12 13465673 13465964 -130320491 + AluY SINE Alu 3 294 -17 2153 119 0 3 chr12 13466087 13466389 -130320066 + AluSg SINE Alu 1 301 -9 186 337 11 11 chr12 13466439 13466531 -130319924 + MIR SINE MIR 97 188 -74 1671 157 0 11 chr12 13466652 13466933 -130319522 + AluJb SINE Alu 3 280 -32 1478 168 3 28 chr12 13466933 13467222 -130319233 + AluJo SINE Alu 17 300 -12 2163 98 0 13 chr12 13467300 13467605 -130318850 - AluSg SINE Alu -9 301 1 186 207 91 91 chr12 13467840 13467961 -130318494 - MIR3 SINE MIR -44 164 44 2365 80 0 0 chr12 13468701 13469012 -130317443 - AluY SINE Alu 0 311 1 735 246 41 100 chr12 13469253 13469411 -130317044 - MLT1J LTR MaLR -6 505 395 1573 178 0 11 chr12 13469411 13469687 -130316768 + AluSx SINE Alu 1 273 -39 735 246 41 100 chr12 13469687 13469850 -130316605 - MLT1J LTR MaLR -116 395 224 800 155 31 0 chr12 13469877 13470006 -130316449 - AluJb SINE Alu -178 134 2 398 247 165 28 chr12 13470012 13470194 -130316261 - MLT1J LTR MaLR -295 216 10 1953 85 0 41 chr12 13470560 13470853 -130315602 + AluSx SINE Alu 23 303 -9 1645 178 0 13 chr12 13471788 13472091 -130314364 + AluJo SINE Alu 9 307 -5 3071 164 20 63 chr12 13473805 13474444 -130312011 - LTR9 LTR ERV1 0 612 1 244 173 19 0 chr12 13474781 13474833 -130311622 - MER4A LTR ERV1 0 664 612 2132 118 0 6 chr12 13474833 13475147 -130311308 + AluSq SINE Alu 1 312 -1 2022 105 0 7 chr12 13475164 13475440 -130311015 + AluSx SINE Alu 3 276 -36 2106 118 0 9 chr12 13476097 13476412 -130310043 + AluSq SINE Alu 2 313 0 373 276 88 119 chr12 13477392 13477871 -130308584 + L3 LINE CR1 1111 1574 -3 813 152 8 0 chr12 13479099 13479224 -130307231 + FLAM_C SINE Alu 1 126 -7 2238 113 0 0 chr12 13479262 13479571 -130306884 + AluSx SINE Alu 4 312 0 1653 157 43 17 chr12 13479582 13479882 -130306573 + AluJb SINE Alu 1 308 -4 439 244 56 56 chr12 13479884 13480044 -130306411 - MIR SINE MIR -90 172 13 241 262 252 29 chr12 13480076 13480179 -130306276 + L2 LINE L2 3146 3271 -1 21 0 0 0 chr12 13480735 13480756 -130305699 + AT_rich Low_complexity Low_complexity 1 21 0 3987 168 63 32 chr12 13482097 13482610 -130303845 + L1MB7 LINE L1 5101 5597 -587 2430 58 0 6 chr12 13482610 13482922 -130303533 + AluY SINE Alu 1 310 -1 3987 168 63 32 chr12 13482922 13483451 -130303004 + L1MB7 LINE L1 5597 6176 -8 208 349 40 60 chr12 13484073 13484222 -130302233 + L2 LINE L2 3127 3272 0 223 283 0 0 chr12 13485474 13485534 -130300921 + MIR SINE MIR 175 234 -28 2224 92 0 16 chr12 13485967 13486283 -130300172 - AluY SINE Alu 0 311 1 326 325 39 132 chr12 13486316 13486747 -130299708 + L2 LINE L2 2847 3237 -35 189 260 10 125 chr12 13486741 13486845 -130299610 - MER5A DNA MER1_type -53 136 45 * 370 239 18 26 chr12 13486863 13486976 -130299479 + L1MEc LINE L1 43 154 -6242 1118 45 0 0 chr12 13486986 13487118 -130299337 - AluY SINE Alu -179 132 1 4876 226 115 47 chr12 13487140 13488413 -130298042 + L1MEc LINE L1 167 1352 -4863 360 0 0 0 chr12 13488413 13488453 -130298002 + (CA)n Simple_repeat Simple_repeat 2 41 0 4876 226 115 47 chr12 13488453 13488855 -130297600 + L1MEc LINE L1 1352 1725 -4490 2120 123 3 0 chr12 13488855 13489147 -130297308 + AluSx SINE Alu 1 293 -19 4876 226 115 47 chr12 13489147 13489509 -130296946 + L1MEc LINE L1 1725 2061 -4154 1496 150 30 34 chr12 13489509 13489776 -130296679 + AluJb SINE Alu 37 302 -10 4876 226 115 47 chr12 13489776 13489877 -130296578 + L1MEc LINE L1 2061 2154 -4061 2107 146 97 5 chr12 13489877 13490267 -130296188 + MSTB LTR MaLR 1 426 0 4876 226 115 47 chr12 13490267 13491074 -130295381 + L1MEc LINE L1 2154 3333 -2882 493 260 81 45 chr12 13491054 13491362 -130295093 + L1MEc LINE L1 1625 1943 -4453 * 1933 133 0 4 chr12 13491365 13491643 -130294812 + AluSx SINE Alu 1 277 -35 9200 139 65 57 chr12 13491684 13492849 -130293606 + L1M4c LINE L1 1 1155 -5229 2499 62 0 3 chr12 13492849 13493155 -130293300 + AluY SINE Alu 1 305 -6 9200 139 65 57 chr12 13493155 13493174 -130293281 + L1M4c LINE L1 1155 1172 -5212 4766 171 78 27 chr12 13493174 13494144 -130292311 - LTR28 LTR ERV1 0 1020 1 9200 139 65 57 chr12 13494144 13494654 -130291801 + L1M4c LINE L1 1172 1676 -4708 2646 92 19 8 chr12 13494654 13495025 -130291430 - THE1C LTR MaLR 0 375 1 9200 139 65 57 chr12 13495025 13495211 -130291244 + L1M4c LINE L1 1676 1859 -4525 1945 130 36 11 chr12 13495211 13495488 -130290967 - AluSx SINE Alu -23 289 6 9200 139 65 57 chr12 13495488 13495532 -130290923 + L1M4c LINE L1 1859 1901 -4483 2103 117 13 16 chr12 13495532 13495841 -130290614 - AluY SINE Alu -3 308 1 2431 75 7 0 chr12 13495842 13496137 -130290318 - AluSx SINE Alu -15 297 1 9200 139 65 57 chr12 13496137 13496168 -130290287 + L1M4c LINE L1 1901 1930 -4454 2853 16 0 3 chr12 13496168 13496486 -130289969 - AluYb8 SINE Alu -1 317 1 9200 139 65 57 chr12 13496486 13496615 -130289840 + L1M4c LINE L1 1930 2109 -4275 821 155 0 0 chr12 13496615 13496731 -130289724 + AluJb SINE Alu 1 116 -196 216 100 0 25 chr12 13496787 13496827 -130289628 + (CCG)n Simple_repeat Simple_repeat 3 41 0 198 256 0 0 chr12 13497066 13497144 -130289311 + GA-rich Low_complexity Low_complexity 3 80 0 1282 167 0 9 chr12 13497938 13498174 -130288281 + AluJb SINE Alu 105 338 0 644 205 90 42 chr12 13498179 13498396 -130288059 - MER39 LTR ERV1 -82 625 420 2326 81 7 0 chr12 13498396 13498694 -130287761 - AluSx SINE Alu -12 300 1 644 205 90 42 chr12 13498694 13498760 -130287695 - MER39 LTR ERV1 -287 420 142 232 239 90 0 chr12 13498853 13498920 -130287535 - MER39 LTR ERV1 -631 76 4 299 262 168 0 chr12 13498960 13499109 -130287346 + L1M4 LINE L1 3325 3498 -2648 2226 98 10 3 chr12 13499576 13499871 -130286584 + AluSc SINE Alu 1 297 -12 1823 132 0 14 chr12 13500046 13500326 -130286129 - AluSq SINE Alu -6 307 32 491 214 68 0 chr12 13500446 13500549 -130285906 - FLAM_A SINE Alu -32 110 1 757 180 0 29 chr12 13501524 13501663 -130284792 - AluJb SINE Alu -26 286 152 30 0 0 0 chr12 13502697 13502727 -130283728 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 13505092 13505127 -130281328 + AT_rich Low_complexity Low_complexity 1 35 0 477 0 0 0 chr12 13505739 13505792 -130280663 + (TA)n Simple_repeat Simple_repeat 2 54 0 484 92 53 0 chr12 13508282 13508358 -130278097 + HY1 scRNA scRNA 33 112 0 1555 126 0 9 chr12 13508376 13508606 -130277849 + AluJo SINE Alu 81 308 -4 2331 84 7 7 chr12 13509840 13510138 -130276317 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr12 13510418 13510445 -130276010 + AT_rich Low_complexity Low_complexity 1 27 0 768 316 105 32 chr12 13513761 13514322 -130272133 + L2 LINE L2 1762 2363 -951 203 382 141 5 chr12 13514532 13514731 -130271724 + L2 LINE L2 2403 2628 -686 292 259 71 0 chr12 13514731 13514816 -130271639 - MER112 DNA MER1_type -12 248 158 2397 72 3 0 chr12 13515301 13515592 -130270863 - AluSg SINE Alu -12 298 7 190 232 71 89 chr12 13515743 13515855 -130270600 - MIR SINE MIR -27 235 126 326 159 14 58 chr12 13515855 13515924 -130270531 + AluJ/FLAM SINE Alu 22 87 -215 2409 89 3 0 chr12 13515930 13516234 -130270221 - AluSx SINE Alu -7 305 1 2653 42 0 3 chr12 13516846 13517156 -130269299 - AluY SINE Alu -2 309 1 1623 219 75 38 chr12 13518172 13518679 -130267776 + Charlie1a DNA MER1_type 7 532 -923 2157 119 127 21 chr12 13518984 13519371 -130267084 + MSTA LTR MaLR 1 428 0 462 138 58 0 chr12 13519613 13519700 -130266755 - L1MB3 LINE L1 -13 6170 6079 1022 142 71 14 chr12 13520544 13520756 -130265699 + L1MA7 LINE L1 5773 5996 -295 265 222 28 14 chr12 13521055 13521127 -130265328 + GA-rich Low_complexity Low_complexity 3 75 0 1335 167 0 0 chr12 13521192 13521460 -130264995 - AluSg/x SINE Alu 0 350 83 28 0 0 0 chr12 13521548 13521576 -130264879 + AT_rich Low_complexity Low_complexity 1 28 0 2150 118 3 10 chr12 13521651 13521957 -130264498 + AluSx SINE Alu 1 304 -8 197 146 21 62 chr12 13523033 13523081 -130263374 - MIR SINE MIR -38 224 179 2142 112 0 26 chr12 13523629 13523932 -130262523 + AluSx SINE Alu 1 295 -17 433 263 233 25 chr12 13524723 13524963 -130261492 - L3 LINE CR1 -63 1514 1225 515 239 94 91 chr12 13525113 13525190 -130261265 + HAL1 LINE L1 14 89 -2418 1942 156 13 0 chr12 13525190 13525498 -130260957 + AluJb SINE Alu 1 312 0 515 239 94 91 chr12 13525498 13525772 -130260683 + HAL1 LINE L1 89 366 -2141 940 236 128 33 chr12 13525789 13526306 -130260149 + HAL1 LINE L1 802 1367 -1140 2160 115 0 0 chr12 13526354 13526650 -130259805 - AluSg SINE Alu -14 296 1 269 256 39 31 chr12 13526740 13526869 -130259586 + L1M4 LINE L1 3960 4089 -2057 344 287 41 16 chr12 13526869 13526991 -130259464 + GA-rich Low_complexity Low_complexity 4 128 0 601 286 169 24 chr12 13526992 13527502 -130258953 + HAL1 LINE L1 1384 1967 -540 382 263 133 40 chr12 13527682 13527982 -130258473 + HAL1 LINE L1 2180 2507 0 1613 249 121 38 chr12 13528321 13529511 -130256944 + L1M4 LINE L1 3589 5025 -1121 489 130 71 110 chr12 13529580 13529734 -130256721 - L1PB4 LINE L1 0 6156 6009 509 271 53 14 chr12 13529737 13529944 -130256511 + L1M4 LINE L1 5084 5298 -848 433 91 0 91 chr12 13529969 13530046 -130256409 - AluJ/FRAM SINE Alu -24 288 219 1932 161 13 3 chr12 13530111 13530409 -130256046 + AluJo SINE Alu 2 302 -10 2821 59 14 0 chr12 13530461 13530817 -130255638 + L1PA6 LINE L1 5792 6152 -2 264 115 16 33 chr12 13531248 13531309 -130255146 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 2176 120 6 16 chr12 13531364 13531680 -130254775 - AluSq SINE Alu 0 313 1 421 307 110 20 chr12 13531896 13532196 -130254259 - L1ME LINE L1 -399 5722 5396 1793 88 118 8 chr12 13532620 13532882 -130253573 + AluSc SINE Alu 2 292 -17 1810 173 0 10 chr12 13533438 13533727 -130252728 + AluJo SINE Alu 1 286 -26 222 248 0 0 chr12 13533727 13533852 -130252603 + (TA)n Simple_repeat Simple_repeat 2 126 0 987 186 52 9 chr12 13535254 13535464 -130250991 + MER20 DNA MER1_type 1 219 0 646 301 136 11 chr12 13536837 13537123 -130249332 - L3 LINE CR1 -872 705 384 287 298 126 10 chr12 13537241 13537374 -130249081 + MIR SINE MIR 42 185 -61 38 51 0 0 chr12 13537414 13537473 -130248982 + AT_rich Low_complexity Low_complexity 1 59 0 836 97 9 0 chr12 13537473 13537586 -130248869 - FLAM_C SINE Alu -25 118 5 25 0 0 0 chr12 13537590 13537615 -130248840 + AT_rich Low_complexity Low_complexity 1 25 0 2196 105 48 0 chr12 13537752 13538085 -130248370 + THE1A LTR MaLR 1 349 -6 1910 105 0 0 chr12 13538085 13538333 -130248122 - AluSg SINE Alu -62 248 1 660 189 0 0 chr12 13538955 13539066 -130247389 + FLAM_C SINE Alu 1 111 -32 588 315 115 0 chr12 13539672 13539837 -130246618 + MER91A DNA MER1_type 1 184 -12 1220 284 160 7 chr12 13539858 13540284 -130246171 + L2 LINE L2 2805 3295 -18 706 233 0 0 chr12 13540332 13540465 -130245990 + FLAM_A SINE Alu 1 133 0 180 283 0 0 chr12 13540616 13540662 -130245793 - MIR SINE MIR -112 150 105 2066 128 0 0 chr12 13540662 13540967 -130245488 + AluSx SINE Alu 1 305 0 223 274 0 0 chr12 13541565 13541616 -130244839 - MIR SINE MIR -148 114 64 941 266 26 117 chr12 13541650 13542286 -130244169 - L2 LINE L2 0 3313 2748 492 300 140 30 chr12 13542281 13542581 -130243874 + L2 LINE L2 1769 2101 -1213 * 593 221 23 81 chr12 13542649 13542821 -130243634 + MER58A DNA MER1_type 16 177 -47 218 299 165 10 chr12 13542839 13542936 -130243519 + L2 LINE L2 2158 2269 -1045 442 261 109 33 chr12 13542961 13543145 -130243310 + L2 LINE L2 2448 2645 -669 509 237 37 15 chr12 13543169 13543304 -130243151 - MIR SINE MIR -60 202 65 1670 179 7 3 chr12 13544075 13544360 -130242095 - AluJo SINE Alu -14 298 13 23 54 0 0 chr12 13545721 13545758 -130240697 + AT_rich Low_complexity Low_complexity 1 37 0 315 277 41 49 chr12 13546410 13546538 -130239917 - MIR SINE MIR -67 141 49 2127 110 0 17 chr12 13547018 13547319 -130239136 - AluSg SINE Alu -14 296 1 211 292 44 71 chr12 13548648 13548730 -130237725 - MIR SINE MIR -34 228 148 2159 119 0 3 chr12 13548730 13549025 -130237430 - AluSx SINE Alu -18 294 1 211 292 44 71 chr12 13549025 13549055 -130237400 - MIR SINE MIR -114 148 119 2275 85 7 0 chr12 13549600 13549894 -130236561 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr12 13550668 13550704 -130235751 + (A)n Simple_repeat Simple_repeat 1 36 0 1601 181 4 8 chr12 13552564 13552829 -130233626 + AluJo SINE Alu 1 264 -48 2399 65 0 3 chr12 13553112 13553403 -130233052 + AluSc SINE Alu 3 292 -17 22 70 0 0 chr12 13553594 13553637 -130232818 + AT_rich Low_complexity Low_complexity 1 43 0 908 217 95 70 chr12 13554516 13554695 -130231760 - MER46C DNA MER2_type -1 337 144 2133 109 3 0 chr12 13554695 13555008 -130231447 + AluSq SINE Alu 1 314 0 908 217 95 70 chr12 13555008 13555154 -130231301 - MER46C DNA MER2_type -194 144 3 886 181 34 124 chr12 13555701 13555815 -130230640 - MER33 DNA MER1_type -2261 324 201 1852 134 15 0 chr12 13555815 13556084 -130230371 + AluSx SINE Alu 15 287 -25 886 181 34 124 chr12 13556084 13556323 -130230132 - MER33 DNA MER1_type -2384 201 3 369 0 0 0 chr12 13556540 13556581 -130229874 + (CA)n Simple_repeat Simple_repeat 1 41 0 2226 84 0 20 chr12 13556983 13557320 -130229135 + AluY SINE Alu 1 331 0 1741 181 0 10 chr12 13559093 13559391 -130227064 - AluJb SINE Alu -17 295 1 700 137 14 72 chr12 13559391 13559530 -130226925 - AluJo SINE Alu -177 135 5 2204 105 7 0 chr12 13559863 13560159 -130226296 - AluSx SINE Alu -14 298 1 2208 120 0 0 chr12 13560855 13561156 -130225299 + AluSx SINE Alu 1 301 -11 2160 98 6 28 chr12 13561156 13561510 -130224945 + AluY SINE Alu 1 311 0 2341 86 7 0 chr12 13562592 13562894 -130223561 - AluSq SINE Alu -9 304 1 285 128 0 0 chr12 13563626 13563673 -130222782 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 223 128 51 0 chr12 13563753 13563792 -130222663 + (TATG)n Simple_repeat Simple_repeat 2 42 0 294 147 0 0 chr12 13565112 13565180 -130221275 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 186 43 0 0 chr12 13565986 13566009 -130220446 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr12 13567269 13567299 -130219156 + AT_rich Low_complexity Low_complexity 1 30 0 610 176 0 44 chr12 13567598 13567734 -130218721 + L1MB7 LINE L1 6044 6173 -11 362 251 301 10 chr12 13567834 13568033 -130218422 + MIR SINE MIR 6 262 0 207 0 0 0 chr12 13570138 13570161 -130216294 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1751 155 41 14 chr12 13570761 13571052 -130215403 + AluJb SINE Alu 1 299 -13 2296 88 3 10 chr12 13571589 13571895 -130214560 - AluSq SINE Alu -9 304 1 1883 133 4 4 chr12 13572131 13572402 -130214053 - AluSx SINE Alu -15 297 27 1003 92 0 0 chr12 13572407 13572538 -130213917 - AluSg/x SINE Alu -12 300 170 2418 71 3 7 chr12 13573678 13573986 -130212469 + AluSg1 SINE Alu 1 307 -2 213 279 0 33 chr12 13574097 13574158 -130212297 + GA-rich Low_complexity Low_complexity 2 60 0 256 293 194 31 chr12 13574895 13575086 -130211369 + MIR SINE MIR 11 232 -30 2267 96 3 3 chr12 13575257 13575549 -130210906 - AluSx SINE Alu -20 292 1 25 65 0 0 chr12 13577596 13577642 -130208813 + AT_rich Low_complexity Low_complexity 1 46 0 4822 253 84 31 chr12 13577684 13579993 -130206462 + L1MEc LINE L1 1734 4109 -2106 376 257 36 117 chr12 13580007 13580229 -130206226 - L1ME3 LINE L1 0 6162 5959 6376 141 28 5 chr12 13580350 13582344 -130204111 - L1MA5A LINE L1 -7 6290 4255 1837 230 93 58 chr12 13582433 13583155 -130203300 - L1MC5 LINE L1 -541 7420 6674 1486 147 4 9 chr12 13583510 13583741 -130202714 + AluJb SINE Alu 1 230 -82 1529 129 28 0 chr12 13583746 13583963 -130202492 - AluSq SINE Alu -88 225 3 2321 97 3 0 chr12 13584271 13584570 -130201885 - AluSx SINE Alu 0 312 13 28 29 0 0 chr12 13584639 13584674 -130201781 + AT_rich Low_complexity Low_complexity 1 35 0 2419 90 0 3 chr12 13585432 13585743 -130200712 + AluSg SINE Alu 1 310 0 232 237 13 53 chr12 13586938 13587014 -130199441 + (CTATT)n Simple_repeat Simple_repeat 4 76 0 616 229 137 44 chr12 13587953 13588011 -130198444 + MER58A DNA MER1_type 1 52 -2368 1705 172 4 4 chr12 13588011 13588318 -130198137 + AluJb SINE Alu 3 309 0 616 229 137 44 chr12 13588318 13588462 -130197993 + MER58A DNA MER1_type 52 224 0 382 204 94 105 chr12 13588525 13588706 -130197749 - MER20B DNA MER1_type -604 179 1 2102 113 0 11 chr12 13589233 13589551 -130196904 + AluSc SINE Alu 1 315 0 1457 267 47 64 chr12 13589607 13590251 -130196204 + L1MC4 LINE L1 7168 7800 -242 400 77 0 0 chr12 13590389 13590441 -130196014 + Alu SINE Alu 1 52 -250 2216 70 20 37 chr12 13590441 13590740 -130195715 + AluSq SINE Alu 20 313 0 2075 115 39 16 chr12 13590795 13591100 -130195355 + AluSx SINE Alu 1 312 0 494 280 80 14 chr12 13591313 13591517 -130194938 - MIR SINE MIR -23 239 27 1654 184 78 0 chr12 13591645 13591965 -130194490 + MER7A DNA MER2_type 3 345 -1 2510 63 0 3 chr12 13592009 13592312 -130194143 + AluY SINE Alu 1 302 -9 708 185 7 41 chr12 13592375 13592521 -130193934 + FLAM_C SINE Alu 1 141 -2 343 251 71 39 chr12 13592708 13592908 -130193547 + L1M4b LINE L1 105 536 -6319 1625 121 0 64 chr12 13592985 13593250 -130193205 + AluSc SINE Alu 1 248 -61 228 35 0 0 chr12 13593269 13593298 -130193157 + (TAA)n Simple_repeat Simple_repeat 2 30 0 352 274 82 78 chr12 13593524 13593805 -130192650 + L1M4b LINE L1 1050 1331 -5524 792 208 93 45 chr12 13593809 13594159 -130192296 + L1ME2 LINE L1 5774 6161 -5 213 315 41 14 chr12 13594202 13594275 -130192180 + L2 LINE L2 3015 3089 -183 260 374 169 24 chr12 13595493 13595830 -130190625 - L2 LINE L2 -25 3247 2862 2018 126 0 24 chr12 13596903 13597197 -130189258 + AluSg SINE Alu 1 287 -23 329 246 60 90 chr12 13597855 13597989 -130188466 + L2 LINE L2 3169 3298 -15 38 22 0 0 chr12 13599010 13599055 -130187400 + AT_rich Low_complexity Low_complexity 1 45 0 1992 174 107 9 chr12 13600486 13600905 -130185550 + LOR1b LTR ERV1 1 460 -1 851 94 0 0 chr12 13601164 13601297 -130185158 - AluSq SINE Alu 0 310 178 873 40 0 0 chr12 13601298 13601399 -130185056 - AluSq SINE Alu -211 101 1 2202 101 7 0 chr12 13601478 13601765 -130184690 + AluSq SINE Alu 1 289 -24 295 313 78 57 chr12 13602145 13602337 -130184118 - L2 LINE L2 -702 2612 2417 183 80 0 0 chr12 13602404 13602429 -130184026 + (A)n Simple_repeat Simple_repeat 1 25 0 206 103 51 0 chr12 13602568 13602607 -130183848 + C-rich Low_complexity Low_complexity 1 41 0 3620 136 4 2 chr12 13602799 13603323 -130183132 + MER1A DNA MER1_type 3 527 0 2209 210 64 33 chr12 13603357 13603941 -130182514 + L1M4 LINE L1 4714 5278 -896 1577 201 0 14 chr12 13603941 13604268 -130182187 + AluJo SINE Alu 3 325 0 2209 210 64 33 chr12 13604268 13604431 -130182024 + L1M4 LINE L1 5278 5477 -697 824 196 0 25 chr12 13604431 13604594 -130181861 + FRAM SINE Alu 1 159 -7 2209 210 64 33 chr12 13604594 13604705 -130181750 + L1M4 LINE L1 5477 5583 -591 839 74 9 0 chr12 13604705 13604813 -130181642 + AluSq/x SINE Alu 1 109 -203 343 182 0 0 chr12 13604816 13604882 -130181573 + Alu SINE Alu 228 293 -7 2170 92 10 7 chr12 13604946 13605251 -130181204 - AluSc SINE Alu -3 306 1 2144 124 0 3 chr12 13605753 13606052 -130180403 + AluSx SINE Alu 1 298 -14 423 250 94 44 chr12 13606153 13606333 -130180122 + LTR67 LTR ERVL 362 550 -7 2005 158 0 3 chr12 13606338 13606648 -130179807 - AluJb SINE Alu -3 309 1 585 264 11 51 chr12 13607254 13607432 -130179023 - MER5B DNA MER1_type -7 171 1 2399 84 3 6 chr12 13608032 13608343 -130178112 + AluSx SINE Alu 1 310 -2 692 108 20 0 chr12 13608359 13608461 -130177994 - Tigger7 DNA MER2_type -19 2472 2369 2201 160 17 52 chr12 13609491 13610011 -130176444 - L1MC3 LINE L1 -1203 6582 6081 2040 93 0 28 chr12 13610671 13610960 -130175495 + AluSx SINE Alu 1 281 -31 2293 261 71 58 chr12 13610982 13611344 -130175111 + L1MCa LINE L1 46 402 -6024 2127 125 0 0 chr12 13611344 13611633 -130174822 + AluSx SINE Alu 7 295 -17 2293 261 71 58 chr12 13611633 13612418 -130174037 + L1MCa LINE L1 402 1208 -5218 6968 155 136 54 chr12 13612598 13612954 -130173501 + L1MCa LINE L1 51 376 -6050 2144 124 0 0 chr12 13612954 13613245 -130173210 + AluSx SINE Alu 7 297 -15 6968 155 136 54 chr12 13613245 13614032 -130172423 + L1MCa LINE L1 376 1097 -5329 597 146 39 0 chr12 13614032 13614135 -130172320 + U6 snRNA snRNA 1 107 0 6968 155 136 54 chr12 13614135 13614758 -130171697 + L1MCa LINE L1 1097 1991 -4435 2307 110 0 3 chr12 13614758 13615067 -130171388 - AluSq SINE Alu -5 308 1 6968 155 136 54 chr12 13615067 13615215 -130171240 + L1MCa LINE L1 1991 2125 -4301 1932 119 31 7 chr12 13615447 13615741 -130170714 + AluSx SINE Alu 1 301 -11 1901 123 32 41 chr12 13615872 13616212 -130170243 + MER1B DNA MER1_type 1 337 0 2307 113 3 0 chr12 13616447 13616758 -130169697 + AluSp SINE Alu 1 312 -1 957 263 98 89 chr12 13618049 13618259 -130168196 + L1MEd LINE L1 1 208 -5911 2451 91 0 0 chr12 13618259 13618567 -130167888 + AluSg SINE Alu 1 308 -2 957 263 98 89 chr12 13618567 13618915 -130167540 + L1MEd LINE L1 208 564 -5555 233 154 0 0 chr12 13618981 13619020 -130167435 + Alu SINE Alu 2 40 -263 1766 170 55 0 chr12 13619097 13619386 -130167069 + AluJb SINE Alu 7 311 -1 317 133 50 0 chr12 13619386 13619446 -130167009 + L1ME2 LINE L1 6092 6154 -10 2272 97 0 3 chr12 13619460 13619759 -130166696 + AluY SINE Alu 1 298 -13 450 293 78 34 chr12 13619762 13620083 -130166372 + L1MEd LINE L1 563 897 -5222 560 276 85 77 chr12 13620403 13620546 -130165909 + L1MC5 LINE L1 7262 7402 -559 2254 100 0 3 chr12 13620546 13620837 -130165618 + AluY SINE Alu 3 292 -19 560 276 85 77 chr12 13620837 13621211 -130165244 + L1MC5 LINE L1 7402 7783 -178 593 196 43 0 chr12 13621225 13621363 -130165092 + L1MC4a LINE L1 5732 5875 -1933 2226 99 10 0 chr12 13621366 13621659 -130164796 + AluSp SINE Alu 1 296 -17 1182 125 0 0 chr12 13621659 13621819 -130164636 + AluSg/x SINE Alu 132 291 -19 304 244 23 12 chr12 13621819 13621905 -130164550 + L1MC4a LINE L1 5869 5955 -1853 2152 111 17 0 chr12 13621909 13622198 -130164257 + AluSg SINE Alu 1 294 -16 591 236 8 44 chr12 13622233 13622483 -130163972 + L1MC4a LINE L1 5930 6170 -1638 * 2203 181 15 97 chr12 13622476 13622806 -130163649 + L1MC4a LINE L1 6379 6735 -1073 2414 80 3 3 chr12 13622806 13623118 -130163337 + AluSp SINE Alu 1 312 -1 2203 181 15 97 chr12 13623118 13623302 -130163153 + L1MC4a LINE L1 6735 6831 -977 2243 56 0 7 chr12 13623302 13623620 -130162835 + AluY SINE Alu 1 316 0 2203 181 15 97 chr12 13623620 13623761 -130162694 + L1MC4a LINE L1 6831 6982 -826 2629 196 132 36 chr12 13623783 13624527 -130161928 - MER21B LTR ERV1 -30 833 19 494 149 11 11 chr12 13624552 13624639 -130161816 - MER21B LTR ERV1 -776 87 1 2790 196 86 21 chr12 13624639 13625406 -130161049 + L1MC4a LINE L1 6978 7794 -14 325 262 62 39 chr12 13625477 13625888 -130160567 + L1MEd LINE L1 919 1374 -4862 353 298 61 22 chr12 13625971 13626152 -130160303 + L1MEd LINE L1 1481 1668 -4642 249 268 0 73 chr12 13626413 13626495 -130159960 + MIR3 SINE MIR 117 192 -16 205 167 0 0 chr12 13627386 13627422 -130159033 + (CA)n Simple_repeat Simple_repeat 2 37 0 2255 82 3 0 chr12 13627650 13627958 -130158497 + AluY SINE Alu 1 309 0 21 0 0 0 chr12 13628810 13628831 -130157624 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 13630700 13630722 -130155733 + AT_rich Low_complexity Low_complexity 1 22 0 840 110 8 39 chr12 13630990 13631117 -130155338 + AluJb SINE Alu 3 125 -187 1136 135 0 0 chr12 13631120 13631276 -130155179 - AluSg/x SINE Alu -23 287 132 848 197 13 7 chr12 13631294 13631446 -130155009 + AluJb SINE Alu 135 287 -25 2103 213 58 56 chr12 13632261 13632957 -130153498 + L1ME1 LINE L1 5466 6162 -4 783 174 38 80 chr12 13633217 13633355 -130153100 + MER3 DNA MER1_type 6 133 -76 2321 87 0 13 chr12 13633355 13633665 -130152790 - AluSq SINE Alu -7 306 1 783 174 38 80 chr12 13633665 13633738 -130152717 + MER3 DNA MER1_type 133 208 -1 1385 129 188 28 chr12 13633789 13634044 -130152411 + AluJo SINE Alu 1 296 -16 216 343 9 19 chr12 13634934 13635039 -130151416 - L3 LINE CR1 -8 1569 1466 2669 36 3 0 chr12 13635830 13636138 -130150317 - AluY SINE Alu -2 309 1 567 0 0 0 chr12 13637030 13637093 -130149362 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 231 361 130 25 chr12 13637206 13637491 -130148964 + L2 LINE L2 2350 2664 -650 2112 117 3 0 chr12 13637990 13638280 -130148175 - AluSx SINE Alu -21 291 1 2092 130 3 7 chr12 13638283 13638590 -130147865 - AluSx SINE Alu -6 306 1 2258 100 0 16 chr12 13638715 13639026 -130147429 - AluY SINE Alu -5 306 1 690 221 55 76 chr12 13639051 13639236 -130147219 + MER31-int LTR ERV1 2470 2657 -2279 1548 156 30 86 chr12 13639236 13639537 -130146918 - AluJo SINE Alu -22 290 7 690 221 55 76 chr12 13639537 13639883 -130146572 + MER31-int LTR ERV1 2657 3025 -1911 2130 123 3 0 chr12 13640341 13640643 -130145812 + AluSx SINE Alu 1 303 -9 2239 40 4 0 chr12 13640784 13641056 -130145399 - L1PA5 LINE L1 -1 6153 5881 3617 185 55 62 chr12 13641090 13641220 -130145235 + MER31-int LTR ERV1 3171 3300 -1636 2108 138 3 3 chr12 13641220 13641532 -130144923 + AluJb SINE Alu 1 312 0 3617 185 55 62 chr12 13641532 13642435 -130144020 + MER31-int LTR ERV1 3300 4195 -741 933 264 46 65 chr12 13642495 13642911 -130143544 + MER92A LTR ERV1 1 408 -4 1869 131 17 13 chr12 13642925 13643223 -130143232 - AluSx SINE Alu -8 304 6 542 118 20 10 chr12 13643635 13643881 -130142574 + AluJb SINE Alu 1 298 -14 1880 132 11 0 chr12 13643885 13644172 -130142283 + AluSx SINE Alu 1 290 -22 1888 149 92 21 chr12 13644262 13644644 -130141811 + L1MB7 LINE L1 5776 6184 0 2373 53 3 13 chr12 13644655 13644959 -130141496 + AluY SINE Alu 1 301 -10 180 111 0 0 chr12 13644983 13645010 -130141445 + (A)n Simple_repeat Simple_repeat 1 27 0 1752 123 0 83 chr12 13645018 13645343 -130141112 + AluJb SINE Alu 1 298 -14 1475 171 79 14 chr12 13645479 13645759 -130140696 - AluJb SINE Alu -2 300 3 2024 111 0 3 chr12 13646351 13646640 -130139815 + AluSx SINE Alu 14 301 -11 23 0 0 0 chr12 13647058 13647081 -130139374 + AT_rich Low_complexity Low_complexity 1 23 0 2296 62 3 3 chr12 13647455 13647759 -130138696 + AluY SINE Alu 1 304 -7 254 266 292 13 chr12 13647977 13648131 -130138324 - MIR SINE MIR 0 262 66 2255 43 60 0 chr12 13648497 13648778 -130137677 + AluY SINE Alu 1 298 -13 525 178 10 10 chr12 13648958 13649059 -130137396 + MER103 DNA DNA 15 115 -51 182 288 186 0 chr12 13649075 13649134 -130137321 - MIR SINE MIR -109 99 30 2244 86 0 13 chr12 13649319 13649455 -130137000 + AluSx SINE Alu 1 137 -175 2061 138 0 0 chr12 13649455 13649767 -130136688 + AluSx SINE Alu 1 312 0 2244 86 0 13 chr12 13649767 13649932 -130136523 + AluSx SINE Alu 137 298 -14 291 333 139 0 chr12 13650082 13650190 -130136265 + L2 LINE L2 3150 3272 0 203 385 74 7 chr12 13650194 13650329 -130136126 + MIR3 SINE MIR 58 201 -7 2233 87 0 35 chr12 13650330 13650641 -130135814 + AluSp SINE Alu 1 300 -13 1884 69 91 4 chr12 13650652 13650926 -130135529 + AluY SINE Alu 1 298 -13 1481 177 34 0 chr12 13650938 13651203 -130135252 + AluJb SINE Alu 20 293 -19 1298 156 85 85 chr12 13651220 13651515 -130134940 + AluJo SINE Alu 1 295 -7 311 345 40 14 chr12 13651620 13651768 -130134687 - MIR SINE MIR -64 198 47 301 268 12 0 chr12 13653890 13653972 -130132483 + C-rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chr12 13654244 13654265 -130132190 + GC_rich Low_complexity Low_complexity 1 21 0 428 277 36 32 chr12 13655461 13655658 -130130797 - MIR SINE MIR -51 211 20 2137 83 0 19 chr12 13655832 13656144 -130130311 + AluSg SINE Alu 1 306 -4 401 212 94 0 chr12 13656149 13656234 -130130221 + MER69 DNA AcHobo 47 139 -2387 353 91 0 0 chr12 13656269 13656313 -130130142 + MER69 DNA AcHobo 2482 2525 -1 2471 55 0 0 chr12 13656340 13656651 -130129804 + AluY SINE Alu 1 311 0 395 252 81 126 chr12 13656696 13656775 -130129680 + L1ME4a LINE L1 5793 5874 -247 2195 104 3 0 chr12 13656775 13657082 -130129373 - AluSp SINE Alu -5 308 1 395 252 81 126 chr12 13657082 13657311 -130129144 + L1ME4a LINE L1 5874 6087 -34 353 327 29 10 chr12 13657401 13657505 -130128950 - L2 LINE L2 -18 3254 3149 1931 156 0 0 chr12 13657551 13657858 -130128597 + AluJb SINE Alu 2 308 -4 903 161 0 0 chr12 13657913 13658086 -130128369 + AluSg/x SINE Alu 135 307 0 2078 128 0 0 chr12 13658632 13658937 -130127518 + AluSx SINE Alu 1 305 -7 2353 66 0 7 chr12 13658937 13659240 -130127215 + AluY SINE Alu 1 301 -10 2263 74 7 16 chr12 13659263 13659573 -130126882 + AluSq SINE Alu 1 307 -6 2232 78 3 3 chr12 13659776 13660072 -130126383 + AluSx SINE Alu 1 296 -16 268 300 146 80 chr12 13660165 13660528 -130125927 - L2 LINE L2 -1410 1904 1518 476 204 10 19 chr12 13660596 13660699 -130125756 + MER69 DNA AcHobo 47 148 -2378 254 185 49 37 chr12 13660691 13660772 -130125683 + MER69 DNA AcHobo 2444 2525 -1 * 275 296 71 53 chr12 13660818 13660987 -130125468 - L2 LINE L2 -1890 1424 1253 1888 97 3 121 chr12 13661057 13661396 -130125059 - AluSg SINE Alu -1 299 1 2137 90 27 0 chr12 13661409 13661710 -130124745 - AluY SINE Alu -2 309 1 777 138 0 90 chr12 13661722 13661867 -130124588 - AluSq/x SINE Alu -180 133 2 2247 99 3 0 chr12 13661983 13662295 -130124160 + AluSp SINE Alu 1 313 0 2120 122 0 3 chr12 13662553 13662864 -130123591 + AluSg SINE Alu 1 310 0 379 210 0 0 chr12 13662881 13662962 -130123493 + L1MD3 LINE L1 6446 6526 -1469 4776 226 55 52 chr12 13662983 13663277 -130123178 + L1M4 LINE L1 4 296 -6279 2558 135 36 7 chr12 13663277 13663691 -130122764 - MSTB LTR MaLR 0 426 1 4776 226 55 52 chr12 13663691 13664146 -130122309 + L1M4 LINE L1 296 748 -5827 2044 117 0 7 chr12 13664146 13664444 -130122011 + AluSc SINE Alu 1 296 -13 4776 226 55 52 chr12 13664444 13664896 -130121559 + L1M4 LINE L1 748 1198 -5377 2148 125 0 0 chr12 13664896 13665199 -130121256 + AluSx SINE Alu 1 303 -9 4776 226 55 52 chr12 13665199 13665590 -130120865 + L1M4 LINE L1 1198 1587 -4988 1946 130 0 27 chr12 13665590 13665890 -130120565 - AluSx SINE Alu -20 292 1 4776 226 55 52 chr12 13665890 13665935 -130120520 + L1M4 LINE L1 1587 2050 -4525 640 219 77 41 chr12 13665937 13666133 -130120322 + L1MC4 LINE L1 6523 6725 -1317 417 183 0 0 chr12 13666136 13666207 -130120248 - LTR16B LTR ERVL 0 464 394 1726 232 124 7 chr12 13666214 13666632 -130119823 + MLT1F LTR MaLR 11 477 -65 1265 121 25 107 chr12 13666634 13666703 -130119752 - Tigger2 DNA MER2_type 0 2718 2645 1950 106 0 56 chr12 13666703 13666872 -130119583 - AluSx SINE Alu -18 294 148 2097 112 0 0 chr12 13666872 13667168 -130119287 - AluSc SINE Alu -13 296 1 1950 106 0 56 chr12 13667168 13667300 -130119155 - AluSx SINE Alu -164 148 10 1265 121 25 107 chr12 13667300 13667511 -130118944 - Tigger2 DNA MER2_type -73 2645 2461 4802 139 5 4 chr12 13667573 13668321 -130118134 - Tigger2 DNA MER2_type -1969 749 1 326 121 17 17 chr12 13668324 13668382 -130118073 + MLT1F LTR MaLR 484 541 -1 1377 259 39 19 chr12 13668386 13668749 -130117706 - LTR16B LTR ERVL -94 370 1 1794 176 6 36 chr12 13668752 13668810 -130117645 + L1MC4 LINE L1 6727 6785 -1257 2207 100 0 3 chr12 13668810 13669110 -130117345 - AluSq SINE Alu -14 299 1 1794 176 6 36 chr12 13669110 13669408 -130117047 + L1MC4 LINE L1 6785 7072 -970 255 61 0 0 chr12 13669413 13669446 -130117009 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2234 246 47 4 chr12 13669492 13670028 -130116427 + L1MC4 LINE L1 7345 7903 -139 489 191 16 40 chr12 13670941 13671067 -130115388 + MER20 DNA MER1_type 39 161 -58 1983 79 0 8 chr12 13671439 13671704 -130114751 - AluSc SINE Alu -36 273 11 702 235 5 80 chr12 13671710 13671910 -130114545 + LTR39 LTR ERV1 599 783 0 2497 56 0 0 chr12 13672255 13672557 -130113898 + AluY SINE Alu 1 302 -9 274 324 78 0 chr12 13672621 13672723 -130113732 - MIR SINE MIR 0 262 153 315 226 12 36 chr12 13673028 13673112 -130113343 + L1MC3 LINE L1 6571 6652 -1133 2176 93 0 3 chr12 13673118 13673408 -130113047 - AluSc SINE Alu -20 289 1 1718 159 9 22 chr12 13673419 13673734 -130112721 - AluJo SINE Alu -1 311 1 1496 147 52 18 chr12 13674075 13674361 -130112094 + AluJb SINE Alu 1 296 -16 405 0 0 0 chr12 13674362 13674407 -130112048 + (CA)n Simple_repeat Simple_repeat 2 46 0 2410 68 0 7 chr12 13674442 13674752 -130111703 - AluY SINE Alu -3 308 1 481 257 192 24 chr12 13674756 13675196 -130111259 - L1ME4a LINE L1 -3 6118 5600 183 80 0 0 chr12 13675248 13675273 -130111182 + (T)n Simple_repeat Simple_repeat 1 25 0 1577 140 53 4 chr12 13675284 13675548 -130110907 - AluSx SINE Alu -4 308 32 608 196 7 20 chr12 13675551 13675704 -130110751 - Charlie1 DNA MER1_type -28 2733 2583 1065 93 0 0 chr12 13676031 13676170 -130110285 + AluSg1 SINE Alu 1 139 -170 2028 128 0 0 chr12 13676170 13676466 -130109989 + AluSx SINE Alu 1 296 -16 237 239 17 40 chr12 13676484 13676601 -130109854 - MIR SINE MIR -56 206 94 373 202 32 32 chr12 13676855 13676949 -130109506 + MER89 LTR ERV1 9 102 -457 1208 181 41 49 chr12 13676950 13677023 -130109432 + MER89 LTR ERV1 272 344 -215 2014 113 31 0 chr12 13677023 13677191 -130109264 - AluSg SINE Alu -8 302 120 180 0 0 0 chr12 13677191 13677211 -130109244 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2014 113 31 0 chr12 13677211 13677335 -130109120 - AluSg SINE Alu -190 120 1 1208 181 41 49 chr12 13677335 13677527 -130108928 + MER89 LTR ERV1 344 535 -24 266 267 56 72 chr12 13677546 13677726 -130108729 - MIR SINE MIR 0 262 86 1849 147 3 25 chr12 13678594 13678913 -130107542 + AluJo SINE Alu 1 312 0 529 165 0 0 chr12 13679077 13679162 -130107293 - FLAM SINE Alu -19 124 40 3167 77 18 40 chr12 13679252 13679640 -130106815 + MLT2A1 LTR ERVL 1 379 -65 381 93 0 0 chr12 13679640 13679694 -130106761 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3167 77 18 40 chr12 13679694 13679759 -130106696 + MLT2A1 LTR ERVL 379 444 0 396 151 41 14 chr12 13680562 13680635 -130105820 + AluJb SINE Alu 197 271 -31 322 123 46 0 chr12 13680652 13680717 -130105738 + G-rich Low_complexity Low_complexity 4 71 0 * 852 102 4 49 chr12 13680708 13680993 -130105462 + (GGGGA)n Simple_repeat Simple_repeat 1 271 0 432 299 122 66 chr12 13681353 13681731 -130104724 - L2 LINE L2 -4 3268 2870 192 336 8 55 chr12 13682012 13682140 -130104315 - L2 LINE L2 -791 2523 2402 2141 97 3 7 chr12 13682330 13682629 -130103826 + AluSx SINE Alu 1 298 -14 1871 123 10 10 chr12 13682643 13682936 -130103519 + AluSq SINE Alu 14 306 -7 1769 157 11 0 chr12 13682945 13683251 -130103204 + AluJo SINE Alu 1 309 0 496 185 141 30 chr12 13683366 13683501 -130102954 + MIR SINE MIR 85 234 -28 486 145 40 0 chr12 13683509 13683585 -130102870 - AluY SINE Alu -22 289 211 1237 60 0 0 chr12 13683586 13683736 -130102719 - AluSq/x SINE Alu -162 150 1 606 280 125 57 chr12 13683784 13684152 -130102303 - MLT1L LTR MaLR -32 583 191 1043 160 0 11 chr12 13684352 13684533 -130101922 - AluJb SINE Alu 0 312 134 2041 106 3 0 chr12 13684544 13684852 -130101603 - AluSx SINE Alu 0 309 1 218 290 14 13 chr12 13685594 13685678 -130100777 + GA-rich Low_complexity Low_complexity 1 84 0 209 294 15 59 chr12 13685814 13685882 -130100573 - MIR3 SINE MIR -54 154 90 2198 77 3 0 chr12 13686013 13686298 -130100157 - AluY SINE Alu -25 286 1 2270 58 0 0 chr12 13686449 13686727 -130099728 + AluY SINE Alu 1 278 -33 378 0 0 0 chr12 13686727 13686769 -130099686 + (CA)n Simple_repeat Simple_repeat 1 42 0 2142 107 0 7 chr12 13687346 13687646 -130098809 + AluSg SINE Alu 1 298 -12 852 147 0 0 chr12 13688802 13688931 -130097524 + FLAM_C SINE Alu 1 129 -4 762 179 37 79 chr12 13690171 13690257 -130096198 + MER58 DNA MER1_type 1 89 -252 2032 128 0 13 chr12 13690257 13690563 -130095892 - AluSx SINE Alu -10 302 1 762 179 37 79 chr12 13690563 13690666 -130095789 + MER58 DNA MER1_type 89 182 -159 273 203 68 0 chr12 13690668 13690727 -130095728 + MER58 DNA MER1_type 2358 2420 0 23 55 0 18 chr12 13690773 13690802 -130095653 + AT_rich Low_complexity Low_complexity 1 30 -24 1867 150 3 3 chr12 13690802 13691089 -130095366 - AluJb SINE Alu -25 287 1 23 55 0 18 chr12 13691089 13691114 -130095341 + AT_rich Low_complexity Low_complexity 30 54 0 1615 138 0 90 chr12 13691709 13692042 -130094413 + AluJo SINE Alu 1 303 -9 607 317 92 10 chr12 13692768 13693071 -130093384 + L2 LINE L2 2372 2699 -615 1856 96 4 18 chr12 13693082 13693362 -130093093 - AluSg SINE Alu -11 299 24 894 155 0 0 chr12 13693502 13693650 -130092805 + AluSp/q SINE Alu 157 304 -9 675 125 0 2 chr12 13693687 13693950 -130092505 + AluSx SINE Alu 1 305 -4 649 277 193 51 chr12 13693951 13694309 -130092146 + L2 LINE L2 2782 3221 -92 1693 165 21 3 chr12 13694309 13694600 -130091855 - AluJb SINE Alu -8 304 9 649 277 193 51 chr12 13694600 13694708 -130091747 + L2 LINE L2 3221 3312 -1 1966 110 3 23 chr12 13694775 13695075 -130091380 + AluSx SINE Alu 1 294 -18 2156 76 0 14 chr12 13695077 13695366 -130091089 + AluY SINE Alu 16 300 -11 326 277 183 15 chr12 13695574 13695711 -130090744 + L2 LINE L2 3150 3309 -4 320 98 0 0 chr12 13695752 13695793 -130090662 - 5S rRNA rRNA -79 42 2 336 302 62 8 chr12 13695811 13695940 -130090515 - MARNA DNA Mariner -17 569 434 336 24 0 0 chr12 13696664 13696705 -130089750 + (CA)n Simple_repeat Simple_repeat 1 41 0 1621 181 0 22 chr12 13697039 13697354 -130089101 - AluJo SINE Alu -4 308 1 1854 155 3 0 chr12 13697601 13697898 -130088557 - AluJo SINE Alu -14 298 1 1311 265 87 49 chr12 13698773 13699279 -130087176 - MER21B LTR ERV1 -113 750 226 503 172 0 54 chr12 13699340 13699426 -130087029 - MER21B LTR ERV1 -766 97 15 1684 135 7 40 chr12 13699426 13699492 -130086963 - AluJo SINE Alu -26 286 219 1719 156 0 26 chr12 13699492 13699800 -130086655 + AluSx SINE Alu 1 300 -12 1684 135 7 40 chr12 13699800 13700029 -130086426 - AluJo SINE Alu -93 219 1 229 296 161 0 chr12 13700053 13700134 -130086321 + L2 LINE L2 3208 3301 -12 206 264 44 55 chr12 13700244 13700335 -130086120 + MIR3 SINE MIR 96 185 -23 255 31 0 0 chr12 13700363 13700395 -130086060 + (T)n Simple_repeat Simple_repeat 1 32 0 2043 124 0 13 chr12 13701616 13701922 -130084533 + AluJb SINE Alu 1 302 -10 2451 87 37 39 chr12 13702026 13702262 -130084193 + MLT2A1 LTR ERVL 1 237 -207 2115 93 14 3 chr12 13702262 13702553 -130083902 - AluSc SINE Alu -15 294 1 2451 87 37 39 chr12 13702553 13702671 -130083784 + MLT2A1 LTR ERVL 237 354 -90 2222 96 0 13 chr12 13702828 13703131 -130083324 + AluSq SINE Alu 1 299 -14 211 154 26 0 chr12 13703132 13703171 -130083284 - MIR SINE MIR -107 155 116 570 237 36 0 chr12 13703527 13703666 -130082789 - Charlie4a DNA MER1_type -9 499 356 4844 160 44 43 chr12 13703681 13703786 -130082669 + L1MC2 LINE L1 4461 4564 -1780 2246 65 7 0 chr12 13703786 13704076 -130082379 + AluY SINE Alu 1 292 -19 4844 160 44 43 chr12 13704076 13704809 -130081646 + L1MC2 LINE L1 4564 5295 -1049 3357 110 60 8 chr12 13704809 13705310 -130081145 - MER1A DNA MER1_type 0 527 1 4844 160 44 43 chr12 13705310 13705573 -130080882 + L1MC2 LINE L1 5295 5556 -788 2245 103 0 13 chr12 13705573 13705883 -130080572 + AluSx SINE Alu 3 308 -4 4844 160 44 43 chr12 13705883 13706494 -130079961 + L1MC2 LINE L1 5556 6155 -189 304 223 204 0 chr12 13706608 13706711 -130079744 - MIR SINE MIR -3 259 136 1053 177 181 7 chr12 13706725 13707002 -130079453 - Charlie4a DNA MER1_type -163 345 21 408 154 0 164 chr12 13708658 13708768 -130077687 + L2 LINE L2 3181 3272 0 2067 111 0 13 chr12 13709385 13709701 -130076754 - AluSx SINE Alu 0 312 1 29 79 0 11 chr12 13709765 13709823 -130076632 + AT_rich Low_complexity Low_complexity 1 59 -29 1685 167 10 35 chr12 13709823 13709999 -130076456 - AluJo SINE Alu -9 303 137 2246 103 0 0 chr12 13709999 13710301 -130076154 - AluSx SINE Alu -8 304 3 1685 167 10 35 chr12 13710301 13710435 -130076020 - AluJo SINE Alu -175 137 1 29 79 0 11 chr12 13710435 13710465 -130075990 + AT_rich Low_complexity Low_complexity 59 88 0 2225 78 0 0 chr12 13710608 13710933 -130075522 + AluY SINE Alu 1 325 0 1703 147 7 25 chr12 13711058 13711343 -130075112 + AluJo SINE Alu 1 280 -32 229 340 81 43 chr12 13711571 13711756 -130074699 - L2 LINE L2 -480 2834 2643 322 262 0 0 chr12 13711983 13712044 -130074411 + MIR SINE MIR 56 116 -146 347 312 40 32 chr12 13712304 13712429 -130074026 + L2 LINE L2 3147 3272 0 1792 134 46 65 chr12 13712457 13712741 -130073714 - L1MB8 LINE L1 -7 6171 5896 2299 63 0 10 chr12 13712741 13713043 -130073412 - AluY SINE Alu -12 299 1 1792 134 46 65 chr12 13713043 13713192 -130073263 - L1MB8 LINE L1 -282 5896 5746 223 336 78 9 chr12 13713420 13713536 -130072919 + L2 LINE L2 2946 3069 -203 2498 49 0 3 chr12 13713808 13714112 -130072343 - AluY SINE Alu -8 303 1 223 230 32 75 chr12 13714535 13714670 -130071785 + MIR SINE MIR 26 198 -64 21 0 0 0 chr12 13714923 13714944 -130071511 + GC_rich Low_complexity Low_complexity 1 21 0 556 151 25 67 chr12 13717069 13717159 -130069296 + FLAM_A SINE Alu 22 107 -204 2218 91 14 0 chr12 13717159 13717456 -130068999 - AluSx SINE Alu -11 301 1 556 151 25 67 chr12 13717456 13717484 -130068971 + FLAM_A SINE Alu 107 135 -176 222 266 64 37 chr12 13717671 13717780 -130068675 + MIR SINE MIR 77 188 -74 2098 119 3 0 chr12 13717876 13718169 -130068286 + AluSg SINE Alu 1 294 -16 1398 167 44 63 chr12 13718187 13718504 -130067951 - AluJb SINE Alu -1 311 1 2130 113 0 0 chr12 13718514 13718815 -130067640 - AluSx SINE Alu -11 301 1 907 286 119 3 chr12 13719203 13719497 -130066958 + L2 LINE L2 2967 3294 -19 1004 83 28 0 chr12 13720211 13720355 -130066100 - L1PA5 LINE L1 0 6154 6007 2024 96 16 35 chr12 13720431 13720745 -130065710 - AluSx SINE Alu -4 308 1 1748 175 0 3 chr12 13720812 13721109 -130065346 + AluJb SINE Alu 5 300 -12 941 113 0 0 chr12 13721112 13721245 -130065210 + AluSq/x SINE Alu 1 133 -179 2126 36 0 0 chr12 13721249 13721501 -130064954 + AluY SINE Alu 1 252 -59 1660 225 74 50 chr12 13722839 13723342 -130063113 - LTR33 LTR ERVL -6 515 1 4093 78 11 28 chr12 13723444 13723829 -130062626 - MER41A LTR ERV1 0 554 180 2036 52 3 72 chr12 13723829 13724155 -130062300 - AluSp SINE Alu 0 305 1 4093 78 11 28 chr12 13724155 13724332 -130062123 - MER41A LTR ERV1 -374 180 1 393 261 79 20 chr12 13724332 13724534 -130061921 + L1ME LINE L1 5626 5839 -327 2414 78 0 0 chr12 13724691 13724999 -130061456 + AluSc SINE Alu 1 308 -1 2018 104 0 7 chr12 13725012 13725292 -130061163 + AluSx SINE Alu 20 297 -15 2932 177 18 25 chr12 13725384 13725436 -130061019 - MLT2B3 LTR ERVL 0 554 503 570 98 0 0 chr12 13725436 13725518 -130060937 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2932 177 18 25 chr12 13725518 13726023 -130060432 - MLT2B3 LTR ERVL -51 503 1 390 329 54 14 chr12 13726067 13726289 -130060166 - L2 LINE L2 -157 3156 2926 1585 174 11 7 chr12 13726300 13726581 -130059874 + AluJo SINE Alu 13 294 -18 352 252 22 0 chr12 13726582 13726721 -130059734 + (TA)n Simple_repeat Simple_repeat 1 142 0 225 136 45 0 chr12 13726758 13726824 -130059631 + (TA)n Simple_repeat Simple_repeat 1 69 0 2094 127 0 0 chr12 13726838 13727138 -130059317 - AluSx SINE Alu -11 301 2 1599 184 32 18 chr12 13727151 13727494 -130058961 - L1MB5 LINE L1 -44 6130 5783 3805 113 18 55 chr12 13727516 13727676 -130058779 - L1MB3 LINE L1 -2 6181 6017 314 45 23 0 chr12 13727676 13727720 -130058735 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2315 63 3 0 chr12 13727720 13728006 -130058449 - AluSp SINE Alu -26 287 1 3805 113 18 55 chr12 13728006 13728381 -130058074 - L1MB3 LINE L1 -165 6018 5673 1599 170 3 29 chr12 13728381 13728687 -130057768 - AluJb SINE Alu -14 298 1 3805 113 18 55 chr12 13728687 13728823 -130057632 - L1MB3 LINE L1 -510 5673 5533 1953 113 7 7 chr12 13728856 13729149 -130057306 - AluSx SINE Alu -19 293 1 376 45 79 135 chr12 13729296 13729385 -130057070 + MLT2B1 LTR ERVL 1 84 -436 1642 232 50 38 chr12 13729711 13730134 -130056321 + MLT2B1 LTR ERVL 85 512 -8 1786 171 0 29 chr12 13730138 13730454 -130056001 + AluJb SINE Alu 1 307 -5 3189 150 51 70 chr12 13730618 13730655 -130055800 + L1MB8 LINE L1 5457 5493 -685 2173 105 0 0 chr12 13730655 13730951 -130055504 + AluSg SINE Alu 1 296 -14 3189 150 51 70 chr12 13730951 13731082 -130055373 + L1MB8 LINE L1 5493 5625 -553 2054 115 7 0 chr12 13731082 13731370 -130055085 + AluSx SINE Alu 1 290 -22 416 35 17 0 chr12 13731371 13731429 -130055026 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3189 150 51 70 chr12 13731429 13731922 -130054533 + L1MB8 LINE L1 5625 6110 -68 2073 116 10 3 chr12 13731922 13732224 -130054231 - AluSp SINE Alu -9 304 1 3189 150 51 70 chr12 13732224 13732245 -130054210 + L1MB8 LINE L1 6110 6130 -48 389 130 0 0 chr12 13732388 13732442 -130054013 - AluJ/FRAM SINE Alu -28 274 221 1157 164 14 19 chr12 13732442 13732655 -130053800 + AluJo SINE Alu 1 212 -100 785 154 95 24 chr12 13733270 13733406 -130053049 + MER20 DNA MER1_type 39 164 -55 1729 149 17 10 chr12 13733406 13733701 -130052754 + AluJo SINE Alu 1 297 -15 1498 155 35 48 chr12 13733701 13734017 -130052438 + AluJb SINE Alu 1 312 0 785 154 95 24 chr12 13734017 13734048 -130052407 + MER20 DNA MER1_type 163 219 0 274 228 173 55 chr12 13734285 13734412 -130052043 - L2 LINE L2 -4 3309 3168 1939 129 0 17 chr12 13734609 13734933 -130051522 - AluSx SINE Alu 0 312 1 517 222 198 18 chr12 13734969 13735136 -130051319 - MIR SINE MIR -64 198 2 183 333 56 0 chr12 13735163 13735235 -130051220 - MIR SINE MIR -184 78 3 1846 161 10 3 chr12 13735489 13735794 -130050661 + AluJo SINE Alu 1 307 -5 2217 81 24 0 chr12 13735877 13736172 -130050283 + AluSx SINE Alu 1 302 -10 1864 125 11 4 chr12 13736309 13736634 -130049821 - AluSx SINE Alu 0 327 1 381 229 73 10 chr12 13736882 13736978 -130049477 - MIR SINE MIR -44 218 117 211 196 304 27 chr12 13736950 13737062 -130049393 - MIR3 SINE MIR -63 145 3 * 1861 132 14 0 chr12 13737302 13737591 -130048864 + AluSx SINE Alu 1 293 -19 492 194 112 0 chr12 13737681 13737779 -130048676 + MER81 DNA DNA 5 113 -1 2126 68 0 0 chr12 13737955 13738221 -130048234 + AluY SINE Alu 1 266 -45 680 107 39 0 chr12 13738225 13738328 -130048127 - U6 snRNA snRNA 0 107 1 933 227 41 61 chr12 13738360 13738511 -130047944 + MLT1A1 LTR MaLR 10 162 -203 2107 116 7 0 chr12 13738511 13738814 -130047641 + AluSc SINE Alu 5 309 0 933 227 41 61 chr12 13738814 13739079 -130047376 + MLT1A1 LTR MaLR 162 353 -12 1024 172 40 0 chr12 13739694 13739868 -130046587 - MER5A DNA MER1_type -6 183 3 2342 79 0 0 chr12 13740109 13740413 -130046042 + AluSx SINE Alu 1 304 -8 2036 120 3 0 chr12 13740522 13740814 -130045641 + AluSx SINE Alu 1 293 -19 665 296 56 9 chr12 13740858 13741091 -130045364 + MLT1L LTR MaLR 344 587 -28 223 190 51 101 chr12 13741304 13741383 -130045072 + MIR SINE MIR 124 198 -64 866 92 0 0 chr12 13741466 13741585 -130044870 + AluSg/x SINE Alu 180 298 -14 1681 97 26 102 chr12 13741594 13741936 -130044519 + AluYb8 SINE Alu 1 316 -2 525 271 137 75 chr12 13742294 13742747 -130043708 + MLT1J LTR MaLR 1 481 -30 3440 130 12 2 chr12 13742799 13743306 -130043149 - MER41E LTR ERV1 0 512 1 253 283 25 68 chr12 13743381 13743546 -130042909 - MLT1K LTR MaLR -437 151 14 2139 147 0 0 chr12 13743553 13743860 -130042595 + AluSx SINE Alu 1 307 -5 908 223 79 0 chr12 13743880 13744082 -130042373 - MER20 DNA MER1_type -1 218 1 2001 138 44 33 chr12 13744425 13744495 -130041960 - MER47A DNA MER2_type -1957 366 298 2358 107 0 3 chr12 13744495 13744804 -130041651 + AluSc SINE Alu 1 308 -1 2001 138 44 33 chr12 13744804 13745095 -130041360 - MER47A DNA MER2_type -2025 298 1 2462 68 14 0 chr12 13745137 13745432 -130041023 - AluSp SINE Alu -14 299 1 239 276 0 0 chr12 13745617 13745675 -130040780 + L2 LINE L2 3215 3272 0 1748 196 7 0 chr12 13746272 13746578 -130039877 + AluJo SINE Alu 1 308 -4 2505 65 0 0 chr12 13746797 13747091 -130039364 - AluY SINE Alu -17 294 1 280 202 131 40 chr12 13747288 13747387 -130039068 + MER5B DNA MER1_type 1 108 -70 2314 104 0 3 chr12 13747694 13747992 -130038463 - AluSq SINE Alu -16 297 1 2070 134 7 3 chr12 13748046 13748336 -130038119 - AluSx SINE Alu -19 293 3 2437 92 0 0 chr12 13748338 13748643 -130037812 - AluSx SINE Alu -7 305 1 2957 153 34 77 chr12 13749005 13749167 -130037288 + LTR39 LTR ERV1 3 170 -613 2603 44 0 0 chr12 13749167 13749460 -130036995 + AluY SINE Alu 5 297 -14 2957 153 34 77 chr12 13749460 13749567 -130036888 + LTR39 LTR ERV1 170 280 -503 2270 83 0 0 chr12 13749567 13749870 -130036585 - AluSc SINE Alu 0 306 4 2957 153 34 77 chr12 13749870 13750210 -130036245 + LTR39 LTR ERV1 280 588 -195 2206 104 3 3 chr12 13750210 13750508 -130035947 - AluY SINE Alu -13 298 1 2957 153 34 77 chr12 13750508 13750535 -130035920 + LTR39 LTR ERV1 588 615 -168 2145 138 0 0 chr12 13750543 13750834 -130035621 + AluSx SINE Alu 1 291 -21 257 0 30 0 chr12 13750834 13750867 -130035588 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 354 23 0 0 chr12 13750866 13750909 -130035546 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr12 13750909 13750935 -130035520 + AT_rich Low_complexity Low_complexity 1 26 0 739 114 29 0 chr12 13750935 13751040 -130035415 - FLAM_C SINE Alu -25 118 11 617 220 16 89 chr12 13751046 13751237 -130035218 + LTR39 LTR ERV1 599 775 -8 203 349 15 0 chr12 13751560 13751626 -130034829 - L2 LINE L2 -39 3274 3208 1645 150 7 25 chr12 13751650 13751924 -130034531 + AluJo SINE Alu 1 269 -43 1181 211 0 18 chr12 13751969 13752187 -130034268 - AluSq SINE Alu -99 214 1 342 254 0 0 chr12 13752187 13752258 -130034197 + AluJ/FRAM SINE Alu 221 291 -11 1197 188 44 51 chr12 13752285 13752578 -130033877 + AluJb SINE Alu 22 312 0 231 208 0 0 chr12 13752846 13752894 -130033561 - L2 LINE L2 -4 3309 3262 1977 94 8 4 chr12 13753006 13753260 -130033195 - AluSc SINE Alu -54 255 1 1222 79 73 0 chr12 13753260 13753424 -130033031 + MLT2A1 LTR ERVL 225 400 -44 716 206 37 0 chr12 13753652 13753788 -130032667 + MER3 DNA MER1_type 6 146 -63 198 0 0 0 chr12 13753790 13753812 -130032643 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 13753813 13753834 -130032621 + AT_rich Low_complexity Low_complexity 1 21 0 731 146 8 0 chr12 13754987 13755110 -130031345 + FRAM SINE Alu 52 175 -1 2276 92 0 3 chr12 13755121 13755405 -130031050 + AluSc SINE Alu 1 283 -26 743 108 20 0 chr12 13756169 13756271 -130030184 + Tigger7 DNA MER2_type 2369 2472 -19 2539 68 0 0 chr12 13756287 13756596 -130029859 - AluY SINE Alu -2 309 1 353 91 0 0 chr12 13756623 13756667 -130029788 - MER69 DNA AcHobo -1 2525 2482 398 212 94 0 chr12 13756702 13756787 -130029668 - MER69 DNA AcHobo -1087 139 47 1344 204 0 22 chr12 13756792 13757105 -130029350 - AluSg SINE Alu -4 306 1 182 266 64 37 chr12 13757634 13757743 -130028712 - MIR SINE MIR -74 188 77 961 239 20 3 chr12 13757961 13758254 -130028201 + AluSq SINE Alu 5 302 -1 2082 139 0 0 chr12 13758651 13758938 -130027517 - AluSx SINE Alu -25 287 1 724 184 21 0 chr12 13758945 13759086 -130027369 - L1MEc LINE L1 -5330 1212 1069 647 196 29 23 chr12 13759576 13759731 -130026724 - L1MC4 LINE L1 -95 7713 7652 927 155 6 18 chr12 13760195 13760363 -130026092 + FRAM SINE Alu 1 40 0 395 210 94 105 chr12 13761243 13761424 -130025031 + MER20B DNA MER1_type 1 179 -604 561 236 118 0 chr12 13761487 13761631 -130024824 - MER58B DNA MER1_type 0 341 181 877 160 0 0 chr12 13761631 13761784 -130024671 - AluSg/x SINE Alu 0 309 157 358 294 70 40 chr12 13761787 13761901 -130024554 - L1MEc LINE L1 -6022 803 679 1775 182 11 32 chr12 13761901 13762274 -130024181 + MLT1A1 LTR MaLR 1 365 0 358 294 70 40 chr12 13762274 13762360 -130024095 - L1MEc LINE L1 -6146 679 597 683 135 0 18 chr12 13763061 13763172 -130023283 + AluSp/q SINE Alu 194 302 -11 692 275 73 8 chr12 13763183 13763539 -130022916 + L1MEc LINE L1 953 1331 -5065 1226 229 46 39 chr12 13763568 13763957 -130022498 + L1MC4 LINE L1 7345 7736 -306 506 161 191 89 chr12 13764393 13764561 -130021894 + MER21B LTR ERV1 677 861 -2 708 171 31 0 chr12 13764568 13764697 -130021758 - L1MD3 LINE L1 -959 7036 6904 230 181 42 42 chr12 13764701 13764773 -130021682 - L1MEc LINE L1 -6233 592 521 228 299 94 8 chr12 13764915 13765032 -130021423 - L2 LINE L2 0 3272 3146 349 329 7 20 chr12 13765237 13765383 -130021072 + CT-rich Low_complexity Low_complexity 1 144 0 328 264 28 44 chr12 13765405 13765587 -130020868 + CT-rich Low_complexity Low_complexity 2 180 0 276 313 15 0 chr12 13765588 13765655 -130020800 + polypyrimidine Low_complexity Low_complexity 1 68 0 284 296 11 28 chr12 13765671 13765850 -130020605 + C-rich Low_complexity Low_complexity 5 180 0 1209 177 11 57 chr12 13766175 13766457 -130019998 - L1MC3 LINE L1 -1384 6401 6133 1556 159 0 90 chr12 13767773 13768106 -130018349 - AluJo SINE Alu -9 303 1 1377 138 0 5 chr12 13769085 13769281 -130017174 - AluSx SINE Alu -117 195 1 1369 102 16 77 chr12 13770409 13770446 -130016009 - Tigger2a DNA MER2_type -2477 231 193 2200 120 0 0 chr12 13770446 13770737 -130015718 + AluSx SINE Alu 1 291 -21 1369 102 16 77 chr12 13770737 13770945 -130015510 - Tigger2a DNA MER2_type -2515 193 1 2006 153 0 0 chr12 13771037 13771331 -130015124 + AluSx SINE Alu 1 294 -18 1508 134 4 45 chr12 13771585 13771832 -130014623 - AluJb SINE Alu -75 237 1 315 270 11 11 chr12 13772110 13772199 -130014256 - MIR SINE MIR -107 155 67 1646 185 19 26 chr12 13774786 13775099 -130011356 - AluJo SINE Alu -1 311 1 1564 244 94 42 chr12 13775249 13776065 -130010390 - L1MEc LINE L1 -3444 2771 1939 2224 128 0 0 chr12 13776065 13776371 -130010084 - AluSx SINE Alu -6 306 1 1564 244 94 42 chr12 13776371 13776714 -130009741 - L1MEc LINE L1 -4276 1939 1615 1942 222 119 46 chr12 13776718 13777082 -130009373 - L1MC4 LINE L1 -733 7309 6973 2423 68 0 3 chr12 13777082 13777375 -130009080 - AluY SINE Alu -19 292 1 1942 222 119 46 chr12 13777375 13777640 -130008815 - L1MC4 LINE L1 -1069 6973 6626 1868 139 4 7 chr12 13777640 13777920 -130008535 - AluJb SINE Alu -33 279 1 1942 222 119 46 chr12 13777920 13777961 -130008494 - L1MC4 LINE L1 -1416 6626 6589 733 293 71 3 chr12 13777972 13778351 -130008104 - L1MEc LINE L1 -5039 1357 953 2017 117 0 7 chr12 13778362 13778644 -130007811 - AluSq SINE Alu -11 302 23 952 184 0 6 chr12 13778673 13778836 -130007619 - AluJb SINE Alu -14 298 137 1294 280 96 28 chr12 13778836 13779312 -130007143 - L1MEc LINE L1 -5627 769 238 1817 177 11 32 chr12 13779312 13779685 -130006770 + MLT1A1 LTR MaLR 1 365 0 1294 280 96 28 chr12 13779685 13779843 -130006612 - L1MEc LINE L1 -6158 238 92 418 322 41 62 chr12 13779985 13780277 -130006178 - L2 LINE L2 0 3272 2987 2673 45 0 13 chr12 13780308 13780621 -130005834 - AluY SINE Alu -2 309 1 1595 166 40 25 chr12 13780681 13780982 -130005473 + AluJb SINE Alu 1 305 0 2059 122 17 0 chr12 13781006 13781300 -130005155 + AluSx SINE Alu 1 299 -13 2121 126 16 3 chr12 13781333 13781642 -130004813 - AluSq SINE Alu 0 313 1 1630 188 18 0 chr12 13781671 13781948 -130004507 + AluJo SINE Alu 1 282 -30 2103 123 26 0 chr12 13782130 13782432 -130004023 - AluSg SINE Alu 0 310 1 2553 61 0 0 chr12 13782565 13782862 -130003593 - AluY SINE Alu -14 297 1 2172 123 3 7 chr12 13783498 13783808 -130002647 - AluSx SINE Alu -3 309 1 250 324 0 0 chr12 13783820 13783891 -130002564 + L2 LINE L2 3184 3254 -18 2297 93 0 0 chr12 13784419 13784709 -130001746 + AluSx SINE Alu 1 290 -22 1148 221 58 7 chr12 13784849 13785126 -130001329 + L1MD3 LINE L1 7444 7874 -58 1558 157 4 20 chr12 13785126 13785381 -130001074 - AluJb SINE Alu -57 255 5 1148 221 58 7 chr12 13785381 13785415 -130001040 + L1MD3 LINE L1 7874 7905 -27 2018 132 20 7 chr12 13785436 13785739 -130000716 - AluSx SINE Alu 0 312 6 3700 136 116 34 chr12 13785982 13786688 -129999767 - Tigger1 DNA MER2_type -1653 765 2 1451 182 194 30 chr12 13786761 13787341 -129999114 - L1ME1 LINE L1 -154 6012 5528 1609 95 54 0 chr12 13787341 13787562 -129998893 - AluSg/x SINE Alu -12 300 68 1451 182 194 30 chr12 13787562 13787884 -129998571 - L1ME1 LINE L1 -638 5528 4795 582 267 6 0 chr12 13787887 13788052 -129998403 - L1M4 LINE L1 -1014 5943 5778 1876 259 75 36 chr12 13788053 13788410 -129998045 - L1M4c LINE L1 -3441 3516 3175 2522 161 29 2 chr12 13788410 13788825 -129997630 - MSTB LTR MaLR 0 426 1 1876 259 75 36 chr12 13788825 13788864 -129997591 - L1M4c LINE L1 -3782 3175 3139 2141 115 17 10 chr12 13788864 13789160 -129997295 - AluSx SINE Alu -12 300 3 1876 259 75 36 chr12 13789160 13790452 -129996003 - L1M4c LINE L1 -3818 3139 1605 870 146 8 0 chr12 13790481 13790611 -129995844 - FLAM_C SINE Alu -12 131 1 958 241 86 31 chr12 13790629 13791015 -129995440 - L1M4c LINE L1 -5244 1615 1209 474 187 149 15 chr12 13791041 13791175 -129995280 - MLT1F1 LTR MaLR -52 515 364 191 177 51 101 chr12 13791501 13791580 -129994875 + L2 LINE L2 2984 3058 -255 252 254 40 98 chr12 13791776 13791841 -129994614 - L1M4c LINE L1 -6621 238 171 2211 125 0 0 chr12 13791841 13792137 -129994318 - AluSg SINE Alu -14 296 1 252 254 40 98 chr12 13792137 13792295 -129994160 - L1M4c LINE L1 -6688 171 28 2140 135 0 0 chr12 13792334 13792630 -129993825 - AluSx SINE Alu -16 296 1 304 272 68 30 chr12 13792659 13792783 -129993672 - L1MEc LINE L1 -4054 2342 2224 1803 130 41 54 chr12 13792783 13793099 -129993356 - AluSx SINE Alu 0 312 1 304 272 68 30 chr12 13793099 13793209 -129993246 - L1MEc LINE L1 -4172 2224 2099 1264 222 4 19 chr12 13793239 13793496 -129992959 - AluJo SINE Alu -58 254 2 542 193 117 0 chr12 13793497 13793649 -129992806 - L1ME1 LINE L1 -311 5855 5690 796 277 131 9 chr12 13793867 13794282 -129992173 - L3 LINE CR1 -444 1133 617 2345 99 0 0 chr12 13795465 13795767 -129990688 - AluSq SINE Alu -11 302 1 2056 137 0 0 chr12 13795981 13796273 -129990182 - AluSx SINE Alu -20 292 1 497 205 116 0 chr12 13796493 13796605 -129989850 - L2 LINE L2 -1 3312 3188 1383 169 51 54 chr12 13796834 13797130 -129989325 + AluJo SINE Alu 1 295 -17 513 153 0 0 chr12 13797163 13797235 -129989220 - AluS SINE Alu -239 73 2 495 244 24 71 chr12 13797619 13797724 -129988731 + L3 LINE CR1 657 753 -824 2207 103 0 7 chr12 13797724 13798016 -129988439 - AluSx SINE Alu -21 291 2 495 244 24 71 chr12 13798016 13798078 -129988377 + L3 LINE CR1 753 816 -761 2010 129 0 47 chr12 13798079 13798397 -129988058 + AluSx SINE Alu 1 303 -9 575 278 75 0 chr12 13798526 13798699 -129987756 - MIR SINE MIR -75 187 2 242 294 78 29 chr12 13798709 13798811 -129987644 - L3 LINE CR1 -56 1521 1415 * 538 321 25 21 chr12 13798808 13799048 -129987407 + MIR SINE MIR 8 248 -14 625 285 81 62 chr12 13799068 13799277 -129987178 - L3 LINE CR1 -192 1385 1164 1785 159 3 24 chr12 13799277 13799572 -129986883 + AluJb SINE Alu 1 289 -23 625 285 81 62 chr12 13799572 13799731 -129986724 - L3 LINE CR1 -413 1164 1010 342 271 9 28 chr12 13799750 13799849 -129986606 - L3 LINE CR1 -677 900 802 2237 116 0 0 chr12 13799849 13800150 -129986305 - AluSx SINE Alu -11 301 1 2261 124 0 0 chr12 13800373 13800680 -129985775 + AluSx SINE Alu 1 307 -5 524 229 105 0 chr12 13800887 13800992 -129985463 - FLAM_A SINE Alu -17 116 1 368 310 56 21 chr12 13801125 13801267 -129985188 - MIR SINE MIR -24 238 92 1920 117 3 60 chr12 13801594 13801915 -129984540 - AluSx SINE Alu 0 305 2 260 331 106 35 chr12 13802040 13802294 -129984161 - L2 LINE L2 -621 2693 2422 2110 111 27 0 chr12 13802316 13802614 -129983841 - AluSx SINE Alu -4 308 3 1176 271 53 27 chr12 13807204 13807655 -129978800 - L1ME3A LINE L1 -223 5947 5485 868 202 209 39 chr12 13807848 13808105 -129978350 - L1ME4a LINE L1 0 6121 5909 2486 52 0 26 chr12 13808105 13808413 -129978042 + AluY SINE Alu 1 300 -11 868 202 209 39 chr12 13808413 13808571 -129977884 - L1ME4a LINE L1 -212 5909 5635 189 355 53 59 chr12 13808875 13809044 -129977411 - L3 LINE CR1 -75 1502 1335 693 261 85 0 chr12 13809410 13809598 -129976857 - MIR SINE MIR -50 212 9 1188 153 171 78 chr12 13810600 13810934 -129975521 - MLT1A1 LTR MaLR 0 365 1 2106 108 16 29 chr12 13811013 13811329 -129975126 - AluSq SINE Alu -1 312 1 209 265 78 29 chr12 13811867 13811969 -129974486 + MIR SINE MIR 156 262 0 699 289 70 33 chr12 13812172 13812501 -129973954 - LTR67 LTR ERVL -42 515 175 2879 168 33 33 chr12 13813807 13814028 -129972427 - L1MB4 LINE L1 -12 6168 5948 2176 110 3 13 chr12 13814028 13814337 -129972118 - AluJb SINE Alu -6 306 1 2879 168 33 33 chr12 13814337 13814691 -129971764 - L1MB4 LINE L1 -231 5949 5593 6190 180 24 61 chr12 13814714 13815552 -129970903 - L1MB3 LINE L1 -10 6409 5541 11983 34 5 0 chr12 13815552 13817683 -129968772 - L1PA4 LINE L1 -3 6152 4023 6190 180 24 61 chr12 13817683 13819228 -129967227 - L1MB3 LINE L1 -878 5541 4120 5940 68 37 37 chr12 13819234 13819437 -129967018 - SVA Other Other 0 1386 433 5940 72 42 46 chr12 13819437 13820538 -129965917 - SVA Other Other -590 1385 433 1405 96 9 60 chr12 13820552 13820887 -129965568 - SVA Other Other -520 866 549 5545 39 1 160 chr12 13820904 13821875 -129964580 - SVA Other Other -520 866 50 216 0 0 0 chr12 13821885 13821909 -129964546 + (AGGGGG)n Simple_repeat Simple_repeat 6 29 0 12642 175 31 63 chr12 13821920 13822761 -129963694 - L1MB3 LINE L1 -2260 4122 3256 1631 164 9 59 chr12 13822761 13823085 -129963370 - AluJo SINE Alu 0 312 5 12642 175 31 63 chr12 13823085 13823108 -129963347 - L1MB3 LINE L1 -3126 3256 3234 2192 109 0 29 chr12 13823108 13823419 -129963036 - AluSx SINE Alu -10 302 1 12642 175 31 63 chr12 13823419 13823995 -129962460 - L1MB3 LINE L1 -3148 3234 2641 1596 167 52 0 chr12 13823995 13824264 -129962191 - AluSx SINE Alu -23 289 7 12642 175 31 63 chr12 13824264 13824316 -129962139 - L1MB3 LINE L1 -3741 2641 2589 2059 97 3 54 chr12 13824316 13824666 -129961789 - AluY SINE Alu 0 335 1 12642 175 31 63 chr12 13824666 13824741 -129961714 - L1MB3 LINE L1 -3793 2589 2513 1717 171 4 7 chr12 13824741 13825016 -129961439 + AluJo SINE Alu 10 283 -29 12642 175 31 63 chr12 13825016 13825369 -129961086 - L1MB3 LINE L1 -3869 2513 2150 19307 59 5 4 chr12 13825369 13828515 -129957940 - L1PA6 LINE L1 0 6154 3009 12642 175 31 63 chr12 13828515 13828627 -129957828 - L1MB3 LINE L1 -4232 2150 2036 322 113 48 0 chr12 13828627 13828660 -129957795 - MER41A LTR ERV1 -88 466 436 2057 126 44 0 chr12 13828660 13828954 -129957501 + AluSx SINE Alu 1 307 -5 322 113 48 0 chr12 13828954 13828982 -129957473 - MER41A LTR ERV1 -118 436 402 12642 175 31 63 chr12 13828982 13829313 -129957142 - L1MB3 LINE L1 -4346 2036 1696 2360 69 0 20 chr12 13829313 13829616 -129956839 - AluY SINE Alu 0 311 15 12642 175 31 63 chr12 13829616 13830019 -129956436 - L1MB3 LINE L1 -4686 1696 1282 2043 144 0 3 chr12 13830019 13830318 -129956137 - AluSx SINE Alu -14 298 1 12642 175 31 63 chr12 13830318 13831738 -129954717 - L1MB3 LINE L1 -5100 1282 2 1527 161 62 19 chr12 13831726 13832050 -129954405 - L1M3 LINE L1 -578 5602 5265 * 318 323 164 23 chr12 13832260 13832480 -129953975 - MIR SINE MIR -6 256 6 484 227 0 31 chr12 13832580 13832677 -129953778 - FLAM_A SINE Alu -27 115 22 440 278 26 0 chr12 13833026 13833141 -129953314 - MIR SINE MIR -89 173 56 2429 80 0 3 chr12 13833496 13833808 -129952647 - AluY SINE Alu 0 311 1 1827 198 14 32 chr12 13833949 13834318 -129952137 - MLT1A1 LTR MaLR 0 365 4 244 232 160 33 chr12 13835024 13835205 -129951250 + L1MC4 LINE L1 7837 8040 -2 233 361 72 0 chr12 13836362 13836445 -129950010 - L2 LINE L2 -27 3245 3157 2525 60 0 3 chr12 13836480 13836779 -129949676 - AluY SINE Alu -13 298 1 24 0 0 0 chr12 13836945 13836969 -129949486 + AT_rich Low_complexity Low_complexity 1 24 0 1524 266 65 41 chr12 13837055 13837729 -129948726 - L1MC4a LINE L1 -1805 6003 5310 2412 74 3 0 chr12 13837729 13838028 -129948427 - AluSc SINE Alu -9 300 1 1524 266 65 41 chr12 13838028 13838056 -129948399 - L1MC4a LINE L1 -2498 5310 5284 1749 127 0 0 chr12 13838085 13838322 -129948133 - AluSx SINE Alu -75 237 1 3581 169 28 53 chr12 13838766 13839380 -129947075 + L1MD2 LINE L1 5555 6183 -176 1820 141 50 14 chr12 13839380 13839677 -129946778 + AluSx SINE Alu 1 308 -4 751 206 0 0 chr12 13839687 13839813 -129946642 + FLAM_A SINE Alu 2 127 -6 3581 169 28 53 chr12 13839813 13839939 -129946516 + L1MD2 LINE L1 6192 6287 -72 1719 130 24 0 chr12 13840380 13840633 -129945822 + AluJo SINE Alu 47 305 -7 2062 166 89 11 chr12 13840728 13841199 -129945256 + Charlie1b DNA MER1_type 16 523 0 27 0 0 0 chr12 13841520 13841547 -129944908 + AT_rich Low_complexity Low_complexity 1 27 0 688 253 39 11 chr12 13841631 13841813 -129944642 + MIR SINE MIR 70 256 -6 530 253 86 19 chr12 13842233 13842395 -129944060 + MIR SINE MIR 2 174 -88 2991 93 0 0 chr12 13843401 13843765 -129942690 + THE1B LTR MaLR 1 364 0 255 253 0 63 chr12 13843904 13843999 -129942456 - MER103 DNA DNA -47 119 31 1343 193 133 15 chr12 13844093 13844357 -129942098 - AluJo SINE Alu -7 295 1 1722 120 0 0 chr12 13844482 13844716 -129941739 + AluSg/x SINE Alu 76 309 -3 199 354 0 0 chr12 13844730 13844812 -129941643 - MIR3 SINE MIR -49 159 78 608 275 34 14 chr12 13844982 13845189 -129941266 - L1MC5 LINE L1 -66 7895 7685 * 903 196 14 27 chr12 13845174 13845394 -129941061 - L1MD3 LINE L1 -1 7994 7778 467 236 33 121 chr12 13845459 13845641 -129940814 + MER5B DNA MER1_type 13 178 0 1712 136 45 21 chr12 13845677 13845964 -129940491 + AluJb SINE Alu 4 297 -15 478 226 30 38 chr12 13847099 13847232 -129939223 - MIR3 SINE MIR -7 201 70 187 342 77 0 chr12 13847240 13847395 -129939060 - L2 LINE L2 -1574 1740 1574 785 297 21 0 chr12 13847625 13847861 -129938594 + MIR SINE MIR 1 241 -21 25 0 0 0 chr12 13848040 13848065 -129938390 + AT_rich Low_complexity Low_complexity 1 25 0 349 179 90 0 chr12 13850402 13850469 -129935986 + L2 LINE L2 3236 3308 -5 955 235 122 19 chr12 13850551 13850923 -129935532 - MLT1J2 LTR MaLR 0 450 47 1165 148 66 0 chr12 13851168 13851364 -129935091 + MER30 DNA MER1_type 1 209 -21 1596 169 14 35 chr12 13851377 13851667 -129934788 - AluJo SINE Alu -25 287 4 268 248 28 28 chr12 13851721 13851830 -129934625 + L1ME4a LINE L1 5997 6105 -16 225 0 0 0 chr12 13851859 13851884 -129934571 + (T)n Simple_repeat Simple_repeat 1 25 0 257 254 0 0 chr12 13851886 13851945 -129934510 - MER5A DNA MER1_type -55 134 76 1684 168 3 44 chr12 13851955 13852271 -129934184 - AluJo SINE Alu -8 304 2 240 35 0 0 chr12 13852271 13852300 -129934155 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 529 269 69 33 chr12 13852417 13852692 -129933763 - L2 LINE L2 -19 3294 3010 2237 112 3 3 chr12 13854532 13854844 -129931611 - AluSq SINE Alu -1 312 1 2225 103 13 0 chr12 13854854 13855156 -129931299 - AluSg SINE Alu -4 306 1 330 216 52 17 chr12 13856490 13856606 -129929849 + MIR SINE MIR 33 152 -56 22 0 0 0 chr12 13856830 13856852 -129929603 + AT_rich Low_complexity Low_complexity 1 22 0 493 314 53 10 chr12 13857029 13857236 -129929219 + MIR SINE MIR 34 249 -13 2314 49 0 111 chr12 13857931 13858275 -129928180 + AluSc SINE Alu 1 306 -3 21 0 0 0 chr12 13858421 13858442 -129928013 + AT_rich Low_complexity Low_complexity 1 21 0 535 192 68 10 chr12 13859404 13859568 -129926887 + L1MA9 LINE L1 6130 6299 -1 258 290 130 22 chr12 13859834 13859972 -129926483 + MER117 DNA MER1_type 10 162 -35 4474 174 20 0 chr12 13860012 13860821 -129925634 - L1MB7 LINE L1 -19 6165 5341 381 229 114 69 chr12 13861100 13861275 -129925180 - MIR SINE MIR -43 219 37 2193 118 3 0 chr12 13861827 13862124 -129924331 + AluSx SINE Alu 1 298 -14 1785 155 14 3 chr12 13862481 13862771 -129923684 + AluJo SINE Alu 1 293 -19 579 284 14 30 chr12 13863441 13863657 -129922798 - MIR SINE MIR -12 250 40 2166 36 0 4 chr12 13863717 13863970 -129922485 + AluY SINE Alu 1 252 -59 261 0 0 0 chr12 13864449 13864478 -129921977 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 773 131 16 0 chr12 13864898 13865020 -129921435 - AluSg/x SINE Alu 0 312 189 2271 103 0 10 chr12 13865020 13865320 -129921135 + AluSg SINE Alu 1 297 -13 1469 87 5 10 chr12 13865331 13865526 -129920929 - AluSp SINE Alu -119 194 1 4781 225 59 26 chr12 13865526 13865643 -129920812 - L1MB7 LINE L1 -957 5189 5077 2087 128 7 7 chr12 13865643 13865941 -129920514 - AluSq SINE Alu -15 298 1 4781 225 59 26 chr12 13865941 13867225 -129919230 - L1MB7 LINE L1 -1069 5077 3741 1564 220 0 13 chr12 13867490 13867803 -129918652 - AluJb SINE Alu -3 309 1 463 241 143 92 chr12 13867815 13868185 -129918270 - MLT1J LTR MaLR -2 509 121 * 934 169 97 48 chr12 13868169 13868417 -129918038 - MER110A LTR ERV1 -208 260 1 215 197 0 98 chr12 13868425 13868486 -129917969 + L2 LINE L2 3207 3261 -11 426 283 14 21 chr12 13868495 13868640 -129917815 - MIR SINE MIR -2 260 117 438 243 108 0 chr12 13868654 13868765 -129917690 - L2 LINE L2 0 3313 3191 219 347 53 21 chr12 13868765 13868860 -129917595 - MIR SINE MIR -159 103 6 2048 114 34 3 chr12 13868982 13869279 -129917176 - AluSx SINE Alu -6 306 1 414 262 78 0 chr12 13869649 13869790 -129916665 + MER113 DNA MER1_type? 345 496 -25 1083 173 5 0 chr12 13871303 13871488 -129914967 - AluJb SINE Alu -12 300 115 28 29 0 0 chr12 13872383 13872418 -129914037 + AT_rich Low_complexity Low_complexity 1 35 0 948 175 0 0 chr12 13873275 13873429 -129913026 - FRAM SINE Alu -27 149 1 21 0 0 0 chr12 13873429 13873450 -129913005 + AT_rich Low_complexity Low_complexity 1 21 0 1368 216 163 41 chr12 13874000 13874589 -129911866 + MLT2F LTR ERVL 1 661 -2 377 263 51 17 chr12 13874785 13874903 -129911552 + MIR3 SINE MIR 87 208 0 2183 98 0 11 chr12 13875402 13875687 -129910768 + AluSq SINE Alu 1 282 -31 1713 143 0 60 chr12 13876293 13876414 -129910041 + Charlie3 DNA MER1_type 1 128 -2584 2303 81 3 0 chr12 13876414 13876699 -129909756 - AluSg SINE Alu -24 286 1 1713 143 0 60 chr12 13876699 13876980 -129909475 + Charlie3 DNA MER1_type 128 2712 0 4000 123 121 102 chr12 13877953 13879309 -129907146 - pTR5 LTR ERV1 0 2438 734 2139 117 21 0 chr12 13879312 13879603 -129906852 - AluSq SINE Alu -16 297 1 1865 130 20 37 chr12 13884668 13884967 -129901488 - AluJo SINE Alu -18 294 1 565 241 116 19 chr12 13885224 13885431 -129901024 - MIR SINE MIR -29 233 7 2047 111 21 0 chr12 13887070 13887350 -129899105 - AluSx SINE Alu -26 286 1 245 234 226 24 chr12 13888621 13888745 -129897710 + L1ME4a LINE L1 5967 6115 -6 1713 140 15 11 chr12 13889053 13889318 -129897137 - AluJo SINE Alu -20 292 27 220 216 0 0 chr12 13889690 13889741 -129896714 + T-rich Low_complexity Low_complexity 1 51 0 627 282 45 10 chr12 13889741 13889943 -129896512 - MIR SINE MIR -53 209 1 202 193 35 0 chr12 13890282 13890339 -129896116 + A-rich Low_complexity Low_complexity 1 59 0 2114 107 40 7 chr12 13890944 13891243 -129895212 - AluSx SINE Alu -3 309 1 2379 82 0 7 chr12 13891342 13891633 -129894822 - AluSx SINE Alu -13 299 11 1282 181 127 8 chr12 13891850 13892110 -129894345 - AluSg SINE Alu -19 291 1 2429 92 0 0 chr12 13892118 13892424 -129894031 - AluY SINE Alu -5 306 1 333 0 0 0 chr12 13892813 13892850 -129893605 + (TG)n Simple_repeat Simple_repeat 1 37 0 276 325 98 49 chr12 13893916 13894264 -129892191 + L2 LINE L2 2155 2519 -795 2229 105 3 7 chr12 13895128 13895434 -129891021 + AluSp SINE Alu 1 305 -8 509 214 9 0 chr12 13896216 13896328 -129890127 - MIR SINE MIR 0 262 150 1252 170 0 19 chr12 13896328 13896540 -129889915 - AluJo SINE Alu -95 217 10 26 0 0 0 chr12 13897485 13897511 -129888944 + AT_rich Low_complexity Low_complexity 1 26 0 755 197 0 0 chr12 13897559 13897681 -129888774 - FLAM_A SINE Alu -11 122 1 21 36 0 0 chr12 13897800 13897828 -129888627 + AT_rich Low_complexity Low_complexity 1 28 0 5835 229 141 23 chr12 13898025 13900372 -129886083 + L2 LINE L2 705 3313 0 447 253 188 29 chr12 13901324 13901494 -129884961 + MIR SINE MIR 60 256 -6 308 104 0 0 chr12 13901525 13901573 -129884882 + L1MB8 LINE L1 6131 6178 0 285 342 171 5 chr12 13902251 13902450 -129884005 - MIR SINE MIR -29 233 2 1451 153 41 25 chr12 13903306 13903620 -129882835 + MER33 DNA MER1_type 6 324 0 182 283 0 131 chr12 13903757 13903856 -129882599 + MIR SINE MIR 23 108 -154 2306 78 0 0 chr12 13904022 13904335 -129882120 + AluSc SINE Alu 1 313 0 185 319 33 33 chr12 13904401 13904492 -129881963 + L3b LINE CR1 1408 1498 -85 305 346 31 15 chr12 13904550 13904680 -129881775 + MIR3 SINE MIR 62 193 -15 1621 177 0 11 chr12 13904711 13905039 -129881416 - AluJb SINE Alu 0 336 12 198 261 104 61 chr12 13905577 13905692 -129880763 + MIR SINE MIR 61 180 -82 23 0 0 0 chr12 13907027 13907050 -129879405 + AT_rich Low_complexity Low_complexity 1 23 0 218 352 9 48 chr12 13907675 13907780 -129878675 + MIR3 SINE MIR 4 104 -104 2412 72 10 0 chr12 13908042 13908347 -129878108 + AluSq SINE Alu 1 308 -5 2010 100 4 0 chr12 13908883 13909142 -129877313 - AluSp SINE Alu -12 301 42 712 252 88 17 chr12 13909316 13909554 -129876901 + MIR SINE MIR 5 259 -3 2135 73 4 0 chr12 13909556 13909816 -129876639 - AluSx SINE Alu -11 301 41 346 269 45 32 chr12 13910020 13910176 -129876279 - MER103 DNA DNA -8 158 1 1842 142 24 7 chr12 13910598 13910893 -129875562 - AluJb SINE Alu -12 300 1 1176 141 0 101 chr12 13910988 13911215 -129875240 + AluJb SINE Alu 86 289 -23 515 286 103 17 chr12 13911352 13911527 -129874928 - MIR SINE MIR -13 249 60 2336 86 3 0 chr12 13913936 13914240 -129872215 - AluSp SINE Alu -8 305 1 212 306 32 0 chr12 13915543 13915605 -129870850 + L2 LINE L2 2875 2938 -334 229 217 66 19 chr12 13915691 13915797 -129870658 + MER112 DNA MER1_type 11 121 -139 357 323 57 16 chr12 13915956 13916080 -129870375 + L2 LINE L2 3136 3264 -8 588 327 70 49 chr12 13916910 13917552 -129868903 - L2 LINE L2 -9 3263 2596 227 323 88 93 chr12 13917726 13918169 -129868286 + L2 LINE L2 2831 3271 -1 2626 141 83 4 chr12 13918531 13919022 -129867433 - L1MA9 LINE L1 0 6312 5783 221 304 54 22 chr12 13919852 13919944 -129866511 + MIR3 SINE MIR 88 182 -26 237 290 125 62 chr12 13920435 13920611 -129865844 - MIR SINE MIR -56 206 20 1654 169 45 10 chr12 13920999 13921289 -129865166 - AluJo SINE Alu -11 301 2 22 56 0 0 chr12 13921448 13921484 -129864971 + AT_rich Low_complexity Low_complexity 1 36 0 2333 95 3 3 chr12 13921662 13921958 -129864497 - AluSp SINE Alu -17 296 1 2230 122 0 0 chr12 13922109 13922404 -129864051 - AluSx SINE Alu -15 297 3 965 166 25 0 chr12 13922472 13922635 -129863820 - FRAM SINE Alu -10 166 1 2202 118 7 0 chr12 13924563 13924867 -129861588 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr12 13925614 13925646 -129860809 + AT_rich Low_complexity Low_complexity 1 32 0 2192 122 0 0 chr12 13928898 13929194 -129857261 - AluJb SINE Alu -16 296 1 459 264 28 21 chr12 13929464 13929608 -129856847 + MIR SINE MIR 64 208 -54 246 145 29 58 chr12 13931151 13931220 -129855235 + L1MA10 LINE L1 6265 6331 -3 21 36 0 0 chr12 13931250 13931278 -129855177 + AT_rich Low_complexity Low_complexity 1 28 0 327 260 101 66 chr12 13931282 13931509 -129854946 - L1MC4a LINE L1 -1725 6083 5849 2334 72 21 0 chr12 13931602 13931893 -129854562 - AluSp SINE Alu -15 298 2 900 158 8 0 chr12 13931921 13932054 -129854401 + AluJo SINE Alu 1 134 -178 279 0 0 0 chr12 13932062 13932093 -129854362 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 13932565 13932587 -129853868 + AT_rich Low_complexity Low_complexity 1 22 0 666 58 0 11 chr12 13933846 13933933 -129852522 + L1PA7 LINE L1 6057 6142 -12 299 253 133 0 chr12 13934922 13934997 -129851458 - L2 LINE L2 0 3313 3229 506 284 98 30 chr12 13935045 13935309 -129851146 - L2 LINE L2 -74 3239 2958 1960 159 7 3 chr12 13935439 13935740 -129850715 - AluJo SINE Alu -10 302 1 4735 160 48 12 chr12 13935744 13936889 -129849566 - L1MA8 LINE L1 -4 6287 5102 285 125 0 0 chr12 13937751 13937791 -129848664 + AluSx SINE Alu 1 40 -263 1805 125 4 0 chr12 13937956 13938204 -129848251 + AluSx SINE Alu 38 286 -26 2741 16 0 0 chr12 13938207 13938514 -129847941 + AluYb8 SINE Alu 1 307 -11 226 224 32 83 chr12 13938559 13938715 -129847740 + L1ME LINE L1 5724 5871 -250 2302 102 0 3 chr12 13938998 13939301 -129847154 + AluSx SINE Alu 3 304 -8 293 339 8 31 chr12 13940053 13940183 -129846272 + MIR SINE MIR 19 145 -63 1776 74 39 0 chr12 13990458 13990689 -129795766 - AluSx SINE Alu -9 303 64 617 233 59 68 chr12 13990792 13990991 -129795464 + L1ME LINE L1 5448 5646 -475 2207 83 0 48 chr12 13990991 13991304 -129795151 + AluSg SINE Alu 1 298 -12 617 233 59 68 chr12 13991304 13991340 -129795115 + L1ME LINE L1 5646 5681 -440 1758 135 3 57 chr12 13991450 13991595 -129794860 + AluJo SINE Alu 5 127 -185 2071 109 29 26 chr12 13991595 13991906 -129794549 + AluSp SINE Alu 1 312 -1 1758 135 3 57 chr12 13991906 13992057 -129794398 + AluJo SINE Alu 127 285 -27 655 329 132 29 chr12 13992246 13992617 -129793838 - L2 LINE L2 -786 2528 2197 2277 100 0 0 chr12 13992617 13992908 -129793547 + AluSq SINE Alu 1 291 -22 655 329 132 29 chr12 13992908 13993269 -129793186 - L2 LINE L2 -1117 2197 1720 21 36 0 0 chr12 13993571 13993599 -129792856 + AT_rich Low_complexity Low_complexity 1 28 0 2044 128 20 0 chr12 13993715 13994012 -129792443 - AluJb SINE Alu -9 303 1 1304 195 14 48 chr12 13994152 13994471 -129791984 + AluJo SINE Alu 1 309 0 2320 113 3 0 chr12 13994540 13994851 -129791604 - AluSx SINE Alu 0 312 1 1707 151 21 28 chr12 13994951 13995242 -129791213 - AluJo SINE Alu -23 289 1 2202 126 3 0 chr12 13995634 13995935 -129790520 + AluSg SINE Alu 1 302 -8 529 248 68 0 chr12 13996075 13996208 -129790247 - MIR SINE MIR -74 188 47 479 259 167 12 chr12 13996432 13996594 -129789861 + MIR SINE MIR 55 241 -21 240 100 25 0 chr12 13996928 13996968 -129789487 - L1ME4a LINE L1 -11 6110 6070 483 115 4 24 chr12 13996970 13997224 -129789231 + AluSx SINE Alu 1 323 0 799 133 19 38 chr12 13997335 13997493 -129788962 - L1MA9 LINE L1 0 6312 6158 26 64 0 0 chr12 13997772 13997819 -129788636 + AT_rich Low_complexity Low_complexity 1 47 0 539 186 97 0 chr12 13998179 13998303 -129788152 + MIR SINE MIR 83 218 -44 494 269 54 21 chr12 13998713 13998899 -129787556 + MIR SINE MIR 1 192 -70 2059 127 0 13 chr12 13998913 13999234 -129787221 + AluSq SINE Alu 1 313 0 342 0 0 0 chr12 13999241 13999279 -129787176 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1413 164 56 19 chr12 13999280 13999549 -129786906 - AluJb SINE Alu -33 279 1 2288 181 31 43 chr12 13999816 14000324 -129786131 - MLT1D LTR MaLR 0 505 4 1548 83 5 0 chr12 14000574 14000766 -129785689 + AluSg SINE Alu 1 193 -117 1671 184 24 10 chr12 14000861 14001034 -129785421 - AluJb SINE Alu -15 297 117 477 0 0 0 chr12 14001034 14001087 -129785368 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1671 184 24 10 chr12 14001087 14001206 -129785249 - AluJb SINE Alu -195 117 1 666 101 92 18 chr12 14001301 14001410 -129785045 + FRAM SINE Alu 21 137 -39 2363 92 3 0 chr12 14001754 14002048 -129784407 - AluSp SINE Alu -16 297 3 605 287 79 9 chr12 14002238 14002454 -129784001 - MIR SINE MIR -8 254 24 262 258 30 0 chr12 14002484 14002550 -129783905 + MIR3 SINE MIR 118 185 -23 1567 161 20 40 chr12 14004165 14004464 -129781991 + AluJo SINE Alu 1 293 -19 788 230 30 45 chr12 14004517 14004782 -129781673 - MIR SINE MIR -1 261 1 342 274 89 7 chr12 14004814 14004949 -129781506 - MIR SINE MIR -91 171 26 183 80 0 0 chr12 14005391 14005416 -129781039 + (A)n Simple_repeat Simple_repeat 1 25 0 374 121 15 0 chr12 14005974 14006040 -129780415 + L1MB4 LINE L1 6108 6174 -6 278 327 18 18 chr12 14006685 14006798 -129779657 - MIR SINE MIR -59 149 37 274 307 23 0 chr12 14007507 14007595 -129778860 - MIR3 SINE MIR 0 208 119 449 322 84 23 chr12 14007610 14007871 -129778584 - L3 LINE CR1 -563 1014 738 219 88 0 0 chr12 14007939 14007973 -129778482 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1573 134 69 33 chr12 14007976 14008252 -129778203 - AluJb SINE Alu -26 286 1 2056 137 0 13 chr12 14008708 14009014 -129777441 - AluSx SINE Alu -10 302 1 204 300 0 0 chr12 14009218 14009278 -129777177 + L2 LINE L2 2440 2499 -815 459 291 137 17 chr12 14009281 14009515 -129776940 - MIR SINE MIR 0 262 1 243 277 15 0 chr12 14009518 14009583 -129776872 - LTR16B LTR ERVL -110 354 289 277 312 0 0 chr12 14009631 14009788 -129776667 + (TTGG)n Simple_repeat Simple_repeat 1 157 0 266 316 0 0 chr12 14009811 14009988 -129776467 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 300 311 0 0 chr12 14010011 14010188 -129776267 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 252 307 6 0 chr12 14010950 14011187 -129775268 + (TTGG)n Simple_repeat Simple_repeat 1 238 0 355 251 28 22 chr12 14011196 14011375 -129775080 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 936 282 37 0 chr12 14011381 14011622 -129774833 - LTR16B LTR ERVL -167 297 48 230 391 40 6 chr12 14011699 14011873 -129774582 + L2 LINE L2 2564 2743 -571 2052 136 0 7 chr12 14011881 14012014 -129774441 + AluSx SINE Alu 2 134 -178 2523 68 0 0 chr12 14012014 14012310 -129774145 + AluY SINE Alu 1 296 -15 2052 136 0 7 chr12 14012310 14012471 -129773984 + AluSx SINE Alu 134 294 -18 215 227 0 0 chr12 14012982 14013026 -129773429 - L3 LINE CR1 -34 1543 1500 1905 136 3 57 chr12 14013298 14013615 -129772840 + AluSx SINE Alu 1 300 -12 23 68 0 0 chr12 14014279 14014323 -129772132 + AT_rich Low_complexity Low_complexity 1 44 0 680 108 117 33 chr12 14014530 14014650 -129771805 + FLAM_C SINE Alu 9 138 -5 569 265 61 85 chr12 14014663 14014707 -129771748 + L1MC4a LINE L1 4730 4774 -1558 2572 53 7 0 chr12 14014707 14015010 -129771445 + AluY SINE Alu 1 305 -6 569 265 61 85 chr12 14015010 14015529 -129770926 + L1MC4a LINE L1 4774 5304 -1028 1890 147 0 23 chr12 14015529 14015836 -129770619 + AluSx SINE Alu 1 300 -12 569 265 61 85 chr12 14015836 14015880 -129770575 + L1MC4a LINE L1 5304 5348 -984 2069 101 17 20 chr12 14015880 14016176 -129770279 + AluSp SINE Alu 1 295 -18 569 265 61 85 chr12 14016176 14016436 -129770019 + L1MC4a LINE L1 5348 5588 -744 1522 150 80 29 chr12 14016454 14016768 -129769687 - LTR10A LTR ERV1 -99 510 181 243 258 16 48 chr12 14016823 14016947 -129769508 - LTR10A LTR ERV1 -309 300 181 344 215 9 0 chr12 14017184 14017291 -129769164 + CT-rich Low_complexity Low_complexity 1 108 0 2982 63 0 0 chr12 14017464 14017831 -129768624 + L1PA5 LINE L1 5783 6149 -5 349 248 62 31 chr12 14017997 14018126 -129768329 + L1MC4a LINE L1 5810 5942 -1866 1761 161 16 29 chr12 14018368 14018678 -129767777 - AluJo SINE Alu -6 306 1 2155 108 0 41 chr12 14018691 14019006 -129767449 - AluSx SINE Alu -6 306 5 24 53 0 0 chr12 14019665 14019703 -129766752 + AT_rich Low_complexity Low_complexity 1 38 0 304 287 42 14 chr12 14019748 14019891 -129766564 + L2 LINE L2 2712 2858 -456 291 290 73 40 chr12 14020170 14020294 -129766161 + L2 LINE L2 3145 3272 0 200 111 28 0 chr12 14021433 14021469 -129764986 + (CACAA)n Simple_repeat Simple_repeat 4 40 0 2216 113 10 0 chr12 14022194 14022494 -129763961 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr12 14022864 14022904 -129763551 + AT_rich Low_complexity Low_complexity 1 40 0 1120 161 0 0 chr12 14022936 14023104 -129763351 - AluJb SINE Alu -16 296 129 2268 91 0 26 chr12 14023123 14023431 -129763024 + AluSg SINE Alu 1 300 -10 692 151 92 164 chr12 14023440 14023678 -129762777 + AluJo SINE Alu 41 261 -51 2282 96 7 0 chr12 14023740 14024031 -129762424 + AluSp SINE Alu 1 293 -20 1541 127 26 136 chr12 14024408 14024754 -129761701 + AluYb8 SINE Alu 1 308 0 2379 98 0 13 chr12 14024956 14025272 -129761183 + AluSx SINE Alu 1 312 0 2504 64 0 13 chr12 14026341 14026655 -129759800 - AluY SINE Alu -1 310 1 2272 93 30 3 chr12 14027096 14027397 -129759058 + AluSx SINE Alu 1 309 -3 2519 67 3 0 chr12 14028494 14028794 -129757661 - AluY SINE Alu -10 301 1 2224 117 3 0 chr12 14028969 14029267 -129757188 + AluSx SINE Alu 1 299 -13 2361 79 3 0 chr12 14030019 14030310 -129756145 + AluY SINE Alu 6 297 -14 401 237 21 0 chr12 14030316 14030409 -129756046 - MER53 DNA DNA -94 95 1 1633 142 19 111 chr12 14030606 14030740 -129755715 - L1MB7 LINE L1 0 6184 6039 2317 97 7 0 chr12 14030740 14031050 -129755405 - AluSp SINE Alu -1 312 1 1633 142 19 111 chr12 14031050 14031339 -129755116 - L1MB7 LINE L1 -145 6039 5800 1096 152 34 0 chr12 14031339 14031517 -129754938 - AluJo SINE Alu -12 300 117 228 23 0 68 chr12 14031572 14031616 -129754839 + (TTC)n Simple_repeat Simple_repeat 1 41 0 919 192 149 18 chr12 14031621 14031642 -129754813 - L1ME3A LINE L1 -345 5825 5808 1952 155 3 3 chr12 14031642 14031951 -129754504 - AluJb SINE Alu -3 309 1 919 192 149 18 chr12 14031951 14032176 -129754279 - L1ME3A LINE L1 -362 5808 5547 2458 59 7 7 chr12 14033558 14033861 -129752594 - AluSp SINE Alu -10 303 1 2192 99 16 22 chr12 14034673 14034986 -129751469 - AluSx SINE Alu -1 311 1 1132 157 45 10 chr12 14035154 14035352 -129751103 - AluJo SINE Alu -7 305 101 1683 108 0 54 chr12 14035549 14035716 -129750739 - AluSx SINE Alu -12 300 150 1828 110 6 113 chr12 14035716 14036042 -129750413 - AluSx SINE Alu -21 291 1 1683 108 0 54 chr12 14036042 14036132 -129750323 - AluSx SINE Alu -162 150 57 2115 119 14 0 chr12 14036188 14036483 -129749972 - AluSc SINE Alu -10 299 1 422 274 115 0 chr12 14038105 14038262 -129748193 + MIR SINE MIR 88 262 0 195 42 0 0 chr12 14038332 14038356 -129748099 + (T)n Simple_repeat Simple_repeat 1 24 0 10547 59 18 42 chr12 14038356 14039776 -129746679 - SVA Other Other 0 1386 1 1748 164 13 17 chr12 14040019 14040317 -129746138 + AluSx SINE Alu 1 297 -15 1709 173 29 10 chr12 14040915 14041221 -129745234 - AluJb SINE Alu 0 312 1 366 327 74 25 chr12 14041417 14041579 -129744876 - L2 LINE L2 0 3272 3103 746 215 117 44 chr12 14041775 14041928 -129744527 - MER58A DNA MER1_type -2197 223 50 2477 88 3 0 chr12 14041928 14042236 -129744219 + AluSp SINE Alu 1 309 -4 746 215 117 44 chr12 14042236 14042287 -129744168 - MER58A DNA MER1_type -2370 50 4 305 314 0 39 chr12 14042416 14042518 -129743937 + MER5A DNA MER1_type 89 186 -3 321 272 40 32 chr12 14042531 14042656 -129743799 - L2 LINE L2 -557 2757 2632 418 349 52 15 chr12 14042657 14042904 -129743551 + MIR SINE MIR 3 255 -7 312 329 90 22 chr12 14042939 14043216 -129743239 - L2 LINE L2 -1046 2268 1973 288 318 38 15 chr12 14043890 14044022 -129742433 - L2 LINE L2 -1 3271 3137 1269 204 136 50 chr12 14044362 14044827 -129741628 + MLT1D LTR MaLR 1 505 0 2181 190 161 101 chr12 14045121 14045966 -129740489 - LTR28 LTR ERV1 0 1020 1 184 314 79 36 chr12 14046482 14046622 -129739833 + L2 LINE L2 3168 3313 0 256 306 66 8 chr12 14046625 14046746 -129739709 + MIR SINE MIR 114 241 -21 866 152 6 13 chr12 14047234 14047392 -129739063 - L1MB7 LINE L1 0 6184 6028 324 226 0 0 chr12 14047394 14047456 -129738999 + L1MC2 LINE L1 5767 5828 -516 865 142 0 0 chr12 14047461 14047588 -129738867 + FLAM_A SINE Alu 16 142 0 2241 131 117 13 chr12 14047599 14048057 -129738398 + L1MC2 LINE L1 5816 6344 0 4379 132 81 17 chr12 14048061 14048586 -129737869 - L1MB7 LINE L1 -145 6039 5549 2185 85 21 7 chr12 14048586 14048869 -129737586 - AluSc SINE Alu -21 288 2 4379 132 81 17 chr12 14048869 14049297 -129737158 - L1MB7 LINE L1 -635 5549 5005 864 177 16 47 chr12 14049297 14049489 -129736966 - AluJb SINE Alu -10 302 117 7747 211 40 27 chr12 14049489 14051534 -129734921 - L1MB7 LINE L1 -1170 4976 2905 237 183 0 118 chr12 14051538 14051631 -129734824 - L1MB7 LINE L1 -3200 2946 2865 2897 10 0 0 chr12 14052756 14053067 -129733388 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr12 14053449 14053470 -129732985 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 14053578 14053611 -129732844 + AT_rich Low_complexity Low_complexity 1 33 0 2144 130 0 9 chr12 14053611 14053927 -129732528 - AluSq SINE Alu 0 313 1 1102 127 0 0 chr12 14053991 14054149 -129732306 + AluSq SINE Alu 149 306 -7 986 282 113 28 chr12 14054475 14054972 -129731483 - MARNA DNA Mariner -39 547 9 23 68 0 0 chr12 14055234 14055278 -129731177 + AT_rich Low_complexity Low_complexity 1 44 0 1762 137 16 49 chr12 14055466 14055772 -129730683 + AluJo SINE Alu 3 298 -14 1673 169 26 30 chr12 14055776 14056078 -129730377 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 14056152 14056172 -129730283 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 25 65 0 0 chr12 14056215 14056261 -129730194 + AT_rich Low_complexity Low_complexity 1 46 0 514 263 74 16 chr12 14056655 14057081 -129729374 + L1ME4a LINE L1 5350 5887 -234 2323 104 3 7 chr12 14057102 14057411 -129729044 - AluY SINE Alu -3 308 1 321 287 62 31 chr12 14057727 14057856 -129728599 + L2 LINE L2 3172 3304 -9 41 21 0 0 chr12 14058205 14058253 -129728202 + AT_rich Low_complexity Low_complexity 1 48 0 1550 146 0 8 chr12 14058449 14058688 -129727767 + AluJb SINE Alu 1 237 -75 2102 144 13 0 chr12 14058849 14059148 -129727307 + AluSx SINE Alu 1 303 -9 395 248 62 31 chr12 14059375 14059504 -129726951 - MIR SINE MIR -112 150 18 4441 155 79 13 chr12 14059510 14060354 -129726101 - L1MB5 LINE L1 0 6174 5275 6717 49 136 64 chr12 14060354 14061445 -129725010 - MER11A LTR ERVK 0 1266 1 1561 195 43 16 chr12 14061445 14061819 -129724636 - L1MB5 LINE L1 -866 5280 4897 261 0 0 0 chr12 14061917 14061946 -129724509 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr12 14061946 14061969 -129724486 + AT_rich Low_complexity Low_complexity 1 23 0 2288 100 0 3 chr12 14062005 14062295 -129724160 - AluSx SINE Alu -19 293 5 584 138 0 0 chr12 14062388 14062482 -129723973 + L1PB3 LINE L1 6054 6147 -7 288 0 0 0 chr12 14064351 14064383 -129722072 + (CTAGT)n Simple_repeat Simple_repeat 5 36 0 269 227 127 18 chr12 14065637 14065747 -129720708 + MIR SINE MIR 74 195 -67 514 237 15 157 chr12 14066127 14066325 -129720130 + MER91A DNA MER1_type 1 170 -26 752 221 0 32 chr12 14066381 14066535 -129719920 - MER63A DNA MER1_type -2 208 60 2024 121 0 7 chr12 14066833 14067122 -129719333 - AluSx SINE Alu -25 287 1 255 128 0 0 chr12 14067757 14067796 -129718659 - MSTA LTR MaLR 0 428 390 782 69 0 0 chr12 14067796 14067897 -129718558 + AluY SINE Alu 211 311 0 2045 98 126 28 chr12 14067903 14068259 -129718196 - MSTA LTR MaLR -37 391 1 10359 156 32 2 chr12 14068259 14069862 -129716593 - MSTA-int LTR MaLR 0 1651 1 2107 134 161 13 chr12 14069862 14070235 -129716220 - MSTA LTR MaLR 0 428 1 1075 180 5 0 chr12 14070623 14070812 -129715643 - AluSg/x SINE Alu -5 305 116 839 132 25 0 chr12 14070860 14070981 -129715474 - FLAM_C SINE Alu -19 124 1 574 217 81 30 chr12 14071203 14071398 -129715057 + MER63 DNA MER1_type 1 1685 -3 366 171 299 0 chr12 14071428 14071545 -129714910 - MLT1L LTR MaLR -2 613 462 * 1527 87 9 39 chr12 14071519 14071703 -129714752 + MER41A LTR ERV1 244 421 -133 2357 110 0 0 chr12 14071703 14072011 -129714444 - AluSx SINE Alu -2 310 3 1527 87 9 39 chr12 14072011 14072056 -129714399 + MER41A LTR ERV1 421 466 -88 1360 244 111 28 chr12 14072070 14072226 -129714229 - MLT1L LTR MaLR -148 467 325 2575 82 102 3 chr12 14072226 14072569 -129713886 - MER51B LTR ERV1 0 377 1 1360 244 111 28 chr12 14072569 14072843 -129713612 - MLT1L LTR MaLR -290 325 1 1956 134 25 32 chr12 14073251 14073565 -129712890 - AluJb SINE Alu 0 312 1 2195 96 7 4 chr12 14073577 14073909 -129712546 - AluSx SINE Alu 0 333 1 2082 116 0 23 chr12 14073993 14074327 -129712128 + AluSx SINE Alu 1 327 0 1194 226 135 69 chr12 14074415 14074906 -129711549 + MLT1F1 LTR MaLR 1 525 -42 195 42 0 0 chr12 14074922 14074946 -129711509 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 835 213 0 52 chr12 14074949 14075123 -129711332 + FRAM SINE Alu 1 165 -1 608 140 83 102 chr12 14075123 14075280 -129711175 + MLT2C2 LTR ERVL 303 456 -8 454 278 113 0 chr12 14075280 14075431 -129711024 - MIR SINE MIR -94 168 1 794 171 16 0 chr12 14076107 14076236 -129710219 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr12 14076236 14076257 -129710198 + AT_rich Low_complexity Low_complexity 1 21 0 1195 65 0 19 chr12 14076985 14077140 -129709315 + AluSg/x SINE Alu 83 234 -76 873 110 96 14 chr12 14077167 14077313 -129709142 - AluJo SINE Alu -125 187 30 2164 104 0 0 chr12 14077352 14077631 -129708824 + AluSg SINE Alu 1 279 -31 201 39 0 0 chr12 14077639 14077665 -129708790 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2612 37 0 40 chr12 14077704 14078028 -129708427 + AluY SINE Alu 1 311 0 280 291 29 0 chr12 14078083 14078186 -129708269 + MIR3 SINE MIR 103 208 0 1966 133 31 0 chr12 14079060 14079353 -129707102 + AluSx SINE Alu 1 302 -10 2467 83 0 10 chr12 14080056 14080369 -129706086 + AluSx SINE Alu 1 310 -2 489 250 109 27 chr12 14080496 14080680 -129705775 + MIR SINE MIR 20 218 -44 772 197 8 0 chr12 14084005 14084132 -129702323 + FLAM_A SINE Alu 1 128 -5 2014 114 17 0 chr12 14084689 14084979 -129701476 - AluSx SINE Alu -17 295 1 30 0 0 0 chr12 14085170 14085200 -129701255 + AT_rich Low_complexity Low_complexity 1 30 0 2462 80 0 0 chr12 14085329 14085640 -129700815 + AluY SINE Alu 1 311 0 2318 48 62 0 chr12 14086246 14086538 -129699917 + AluY SINE Alu 1 310 -1 297 273 33 33 chr12 14086672 14086793 -129699662 - L2 LINE L2 -213 3059 2939 771 216 18 30 chr12 14087087 14087254 -129699201 - MER5B DNA MER1_type -6 172 8 212 352 48 24 chr12 14087281 14087406 -129699049 + L2 LINE L2 3137 3264 -8 2276 97 7 13 chr12 14088098 14088406 -129698049 + AluSx SINE Alu 1 306 -6 434 294 192 0 chr12 14088462 14088608 -129697847 + L2 LINE L2 3099 3272 0 1939 183 62 16 chr12 14088624 14089061 -129697394 + LTR37B LTR ERV1 9 465 -3 307 220 451 12 chr12 14089497 14089670 -129696785 - MIR SINE MIR -3 259 11 782 201 101 50 chr12 14090227 14090426 -129696029 - MER63A DNA MER1_type 0 210 2 960 132 0 0 chr12 14090591 14090720 -129695735 - FLAM_C SINE Alu -14 129 1 747 109 286 7 chr12 14090852 14090999 -129695456 - MER53 DNA DNA -1 188 1 620 278 84 0 chr12 14091065 14091256 -129695199 + MIR SINE MIR 9 215 -47 1916 121 0 25 chr12 14091726 14092008 -129694447 + AluSx SINE Alu 21 295 -17 2239 133 0 0 chr12 14093154 14093454 -129693001 + AluSx SINE Alu 1 300 -12 536 258 26 53 chr12 14093536 14093726 -129692729 - L2 LINE L2 -26 3287 3103 229 182 52 130 chr12 14093892 14093969 -129692486 + MLT1L LTR MaLR 217 287 -328 245 266 128 0 chr12 14094143 14094237 -129692218 + MLT1L LTR MaLR 510 615 0 434 295 175 66 chr12 14094237 14094648 -129691807 - L2 LINE L2 -234 3079 2616 2115 99 7 0 chr12 14094648 14094921 -129691534 + AluSx SINE Alu 30 304 -8 824 144 46 110 chr12 14094929 14095102 -129691353 + AluJo SINE Alu 86 247 -65 589 248 241 4 chr12 14095103 14095369 -129691086 - L2 LINE L2 -714 2600 2272 325 291 64 81 chr12 14095405 14095639 -129690816 - L2 LINE L2 0 3313 3084 3610 163 45 8 chr12 14096098 14096701 -129689754 + MLT1E2 LTR MaLR 2 626 0 184 242 0 0 chr12 14096846 14096879 -129689576 + MIR SINE MIR 30 62 -146 431 278 125 7 chr12 14096887 14097031 -129689424 + MIR3 SINE MIR 25 185 -23 243 197 113 28 chr12 14097507 14097578 -129688877 - L2 LINE L2 0 3272 3196 1420 109 5 0 chr12 14097894 14098086 -129688369 - AluSx SINE Alu -10 302 110 832 102 0 0 chr12 14098158 14098266 -129688189 - AluSx SINE Alu -205 108 1 2497 91 0 0 chr12 14098481 14098790 -129687665 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr12 14099388 14099416 -129687039 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 532 105 13 0 chr12 14099417 14099493 -129686962 - MADE1 DNA Mariner -3 77 1 1823 179 0 0 chr12 14099495 14099786 -129686669 - AluSx SINE Alu -21 291 1 886 212 0 0 chr12 14099852 14099998 -129686457 + MER20 DNA MER1_type 2 147 -72 1100 179 0 36 chr12 14100002 14100197 -129686258 + AluJo SINE Alu 5 192 -120 583 191 19 0 chr12 14100254 14100359 -129686096 + AluJo SINE Alu 192 298 -14 420 85 32 106 chr12 14100364 14100458 -129685997 + MER20 DNA MER1_type 133 219 0 525 289 55 37 chr12 14100458 14100676 -129685779 + MIR SINE MIR 31 252 -10 637 230 0 18 chr12 14100691 14100856 -129685599 + L1ME4a LINE L1 5955 6116 -5 488 258 90 0 chr12 14100906 14101061 -129685394 + MIR SINE MIR 20 188 -74 1638 158 44 37 chr12 14101196 14101384 -129685071 - AluJb SINE Alu -12 300 108 2188 116 0 0 chr12 14101384 14101678 -129684777 - AluSx SINE Alu -18 294 1 1638 158 44 37 chr12 14101678 14101787 -129684668 - AluJb SINE Alu -204 108 1 1012 199 57 16 chr12 14104101 14104347 -129682108 + MIR SINE MIR 2 257 -5 25 0 0 0 chr12 14105743 14105768 -129680687 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 14106690 14106724 -129679731 + AT_rich Low_complexity Low_complexity 1 34 0 505 274 83 20 chr12 14107206 14107410 -129679045 - MIR SINE MIR -44 218 2 699 266 70 31 chr12 14108057 14108343 -129678112 + Charlie2 DNA MER1_type 23 319 -2543 491 228 31 16 chr12 14108350 14108477 -129677978 + Charlie2 DNA MER1_type 1855 1983 -879 918 171 0 13 chr12 14108502 14108660 -129677795 + FRAM SINE Alu 2 157 -9 758 254 132 31 chr12 14108660 14109015 -129677440 + L1MC4 LINE L1 7105 7495 -547 276 235 71 10 chr12 14109086 14109184 -129677271 + L1MC4 LINE L1 7492 7595 -447 2130 177 66 2 chr12 14109607 14110003 -129676452 - MSTA LTR MaLR 0 428 8 1770 181 136 78 chr12 14110304 14110790 -129675665 + MLT1F1 LTR MaLR 1 514 -53 234 267 0 0 chr12 14110826 14110886 -129675569 + MLT1F1 LTR MaLR 481 540 -2 227 104 21 0 chr12 14111839 14111887 -129674568 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 783 169 0 0 chr12 14113103 14113221 -129673234 - FLAM_C SINE Alu -14 119 2 2258 101 0 0 chr12 14114404 14114690 -129671765 - AluSg SINE Alu -24 286 1 789 194 61 6 chr12 14114709 14114874 -129671581 - MER5B DNA MER1_type 0 178 5 2548 57 0 25 chr12 14114878 14115195 -129671260 - AluY SINE Alu -2 309 1 355 257 193 7 chr12 14115298 14115438 -129671017 - MIR SINE MIR -62 200 35 315 0 0 0 chr12 14117029 14117064 -129669391 + (T)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 14117842 14117866 -129668589 + (A)n Simple_repeat Simple_repeat 1 24 0 2234 96 7 3 chr12 14119306 14119598 -129666857 - AluSg SINE Alu -17 293 1 2392 85 0 3 chr12 14119749 14120042 -129666413 + AluSg SINE Alu 1 292 -18 664 176 0 0 chr12 14120203 14120311 -129666144 + FLAM_A SINE Alu 13 120 -22 324 269 103 0 chr12 14120568 14120646 -129665809 - MLT1L LTR MaLR -226 389 304 835 165 0 0 chr12 14120668 14120801 -129665654 - FLAM_C SINE Alu 0 133 1 231 167 0 0 chr12 14120821 14120863 -129665592 + CT-rich Low_complexity Low_complexity 2 43 0 1100 192 0 0 chr12 14120868 14121050 -129665405 - AluJb SINE Alu -4 308 127 300 265 13 29 chr12 14121053 14121190 -129665265 - MLT1J LTR MaLR -310 305 106 828 144 85 42 chr12 14121390 14121651 -129664804 + MER33 DNA MER1_type 5 324 0 1644 180 41 3 chr12 14122337 14122632 -129663823 + AluJb SINE Alu 1 306 -6 188 33 0 33 chr12 14122923 14122953 -129663502 + (AATAG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr12 14122953 14122982 -129663473 + AT_rich Low_complexity Low_complexity 1 29 0 366 264 28 111 chr12 14123721 14123865 -129662590 + L2 LINE L2 3140 3271 -1 2292 116 0 0 chr12 14124908 14125210 -129661245 + AluSx SINE Alu 1 302 -10 485 88 0 0 chr12 14125802 14125870 -129660585 - Alu SINE Alu -12 300 233 1183 101 0 0 chr12 14125870 14126018 -129660437 + AluSp SINE Alu 148 295 -18 2015 141 0 13 chr12 14126239 14126538 -129659917 - AluJo SINE Alu -17 295 1 3059 260 87 23 chr12 14126802 14128189 -129658266 + L2 LINE L2 1826 3313 0 978 186 0 6 chr12 14128404 14128587 -129657868 - AluJo SINE Alu -9 303 122 1926 117 4 0 chr12 14128678 14128944 -129657511 - AluJo SINE Alu -2 310 44 185 245 133 41 chr12 14129319 14129417 -129657038 + MIR SINE MIR 84 190 -72 2312 94 0 7 chr12 14129455 14129752 -129656703 + AluSg1 SINE Alu 1 295 -14 1768 161 11 3 chr12 14130137 14130423 -129656032 - AluJo SINE Alu -20 292 5 2311 103 0 3 chr12 14130758 14131059 -129655396 + AluSq SINE Alu 1 300 -13 1550 190 38 14 chr12 14131239 14131529 -129654926 - AluJo SINE Alu -15 297 1 2157 101 39 0 chr12 14131711 14131997 -129654458 + AluSc SINE Alu 1 297 -12 873 232 52 69 chr12 14132035 14132347 -129654108 - MLT1J1 LTR MaLR -143 368 21 362 217 0 0 chr12 14132356 14132416 -129654039 + FRAM/FAM SINE Alu 31 90 -76 973 161 19 0 chr12 14133366 14133521 -129652934 - FRAM SINE Alu -19 157 1 949 245 98 60 chr12 14133647 14133746 -129652709 + L2 LINE L2 2730 2824 -489 2353 101 3 7 chr12 14133746 14134052 -129652403 - AluSx SINE Alu -7 305 1 949 245 98 60 chr12 14134052 14134225 -129652230 + L2 LINE L2 2824 2989 -324 2048 132 3 0 chr12 14134225 14134520 -129651935 - AluSx SINE Alu -16 296 1 949 245 98 60 chr12 14134520 14134809 -129651646 + L2 LINE L2 2989 3312 -1 498 297 34 11 chr12 14136380 14136555 -129649900 + MIR3 SINE MIR 15 193 -15 21 36 0 0 chr12 14137519 14137547 -129648908 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr12 14141189 14141229 -129645226 + AT_rich Low_complexity Low_complexity 1 40 0 1305 132 18 27 chr12 14141300 14141520 -129644935 - MER20 DNA MER1_type -1 218 1 23 33 0 0 chr12 14142601 14142631 -129643824 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr12 14143976 14144000 -129642455 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr12 14144727 14144767 -129641688 + GC_rich Low_complexity Low_complexity 1 40 0 26 93 0 0 chr12 14145005 14145080 -129641375 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 14145129 14145153 -129641302 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 14145699 14145721 -129640734 + GC_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 14145922 14145976 -129640479 + GC_rich Low_complexity Low_complexity 1 54 0 237 196 0 0 chr12 14146047 14146098 -129640357 + (TG)n Simple_repeat Simple_repeat 2 52 0 42 48 0 0 chr12 14146322 14146385 -129640070 + GC_rich Low_complexity Low_complexity 1 63 0 228 163 0 0 chr12 14146845 14146888 -129639567 + A-rich Low_complexity Low_complexity 1 43 0 434 285 14 54 chr12 14147564 14147785 -129638670 + L3 LINE CR1 1364 1575 -2 1378 138 62 4 chr12 14147853 14148128 -129638327 + MER33 DNA MER1_type 34 324 0 1307 214 27 17 chr12 14148271 14148588 -129637867 - AluJo SINE Alu 0 321 2 198 0 0 0 chr12 14148644 14148666 -129637789 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1641 166 14 10 chr12 14148666 14148956 -129637499 - AluJo SINE Alu -21 291 1 2026 143 10 10 chr12 14149073 14149381 -129637074 + AluJb SINE Alu 1 308 -4 296 257 14 0 chr12 14149581 14149655 -129636800 + L1M4 LINE L1 4502 4576 -1570 784 172 0 15 chr12 14150114 14150248 -129636207 - FLAM_C SINE Alu 0 133 2 714 164 153 63 chr12 14150249 14150438 -129636017 + AluJo SINE Alu 54 259 -53 193 29 59 0 chr12 14150450 14150484 -129635971 + (TAA)n Simple_repeat Simple_repeat 2 37 0 246 154 0 0 chr12 14150493 14150545 -129635910 + L1MB4 LINE L1 6129 6180 0 1549 171 107 0 chr12 14150566 14150716 -129635739 - AluJo SINE Alu -21 291 158 468 0 0 0 chr12 14150716 14150768 -129635687 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 42 0 0 chr12 14150767 14150791 -129635664 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1549 171 107 0 chr12 14150768 14150903 -129635552 - AluJo SINE Alu -154 158 1 292 311 73 46 chr12 14150987 14151088 -129635367 + MIR SINE MIR 12 109 -153 2282 121 0 0 chr12 14151088 14151401 -129635054 + AluSq SINE Alu 1 313 0 292 311 73 46 chr12 14151401 14151518 -129634937 + MIR SINE MIR 109 236 -26 2470 43 0 0 chr12 14151549 14151865 -129634590 + AluY SINE Alu 1 316 0 270 133 100 0 chr12 14152014 14152074 -129634381 + L1MB4 LINE L1 6113 6178 -2 376 230 90 22 chr12 14152191 14152369 -129634086 + L1ME4a LINE L1 5209 5398 -748 2206 107 0 17 chr12 14153148 14153447 -129633008 + AluSx SINE Alu 17 310 -2 1759 152 10 40 chr12 14153721 14154024 -129632431 + AluJb SINE Alu 1 294 -18 234 221 129 57 chr12 14154067 14154207 -129632248 + L1ME4a LINE L1 5881 6030 -91 2363 96 0 3 chr12 14154292 14154593 -129631862 - AluSx SINE Alu -12 300 1 215 239 45 30 chr12 14155203 14155270 -129631185 + MIR3 SINE MIR 134 201 -7 691 163 8 0 chr12 14155818 14155941 -129630514 + FLAM_A SINE Alu 19 142 0 239 314 145 17 chr12 14155998 14156321 -129630134 - L2 LINE L2 -171 3101 2737 1103 188 82 78 chr12 14156334 14156465 -129629990 + AluJo SINE Alu 4 133 -169 225 0 0 0 chr12 14156465 14156490 -129629965 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1103 188 82 78 chr12 14156490 14156651 -129629804 + AluJo SINE Alu 133 297 -5 1752 148 49 18 chr12 14156654 14156763 -129629692 + AluJb SINE Alu 15 119 -193 2167 115 20 3 chr12 14156763 14157067 -129629388 + AluSq SINE Alu 1 309 -4 1752 148 49 18 chr12 14157067 14157241 -129629214 + AluJb SINE Alu 119 307 -5 250 246 0 0 chr12 14158622 14158679 -129627776 - MIR SINE MIR -16 246 190 1854 159 10 13 chr12 14158892 14159193 -129627262 - AluJo SINE Alu -10 302 3 556 243 133 32 chr12 14159486 14159704 -129626751 + MLT1J LTR MaLR 272 511 0 2214 118 0 13 chr12 14160506 14160673 -129625782 - AluSx SINE Alu -12 300 137 2250 114 0 0 chr12 14160673 14160970 -129625485 - AluY SINE Alu -14 297 1 2214 118 0 13 chr12 14160970 14161106 -129625349 - AluSx SINE Alu -175 137 1 450 69 0 0 chr12 14161545 14161603 -129624852 + AluJ/FLAM SINE Alu 2 59 -253 1806 153 7 31 chr12 14161909 14162203 -129624252 - AluJo SINE Alu -25 287 1 220 254 260 34 chr12 14162411 14162588 -129623867 - MIR SINE MIR 0 262 46 1398 81 0 6 chr12 14163174 14163348 -129623107 + AluSg1 SINE Alu 1 173 -136 898 111 16 0 chr12 14163469 14163624 -129622831 + AluSg1 SINE Alu 154 310 0 262 136 23 0 chr12 14163628 14163672 -129622783 + L1MC5 LINE L1 7023 7067 -894 3859 151 23 2 chr12 14163697 14164301 -129622154 - Tigger7 DNA MER2_type -1869 618 2 662 137 16 99 chr12 14164309 14164491 -129621964 - L1MC5 LINE L1 -995 6966 6800 186 103 0 0 chr12 14164601 14164630 -129621825 + (TTG)n Simple_repeat Simple_repeat 1 29 0 277 234 106 21 chr12 14164767 14164861 -129621594 + MLT1L LTR MaLR 167 268 -347 1694 147 43 0 chr12 14165120 14165401 -129621054 + AluJb SINE Alu 15 306 0 2334 93 0 3 chr12 14165407 14165707 -129620748 + AluSq SINE Alu 1 299 -14 271 219 143 0 chr12 14165913 14166018 -129620437 - L1MC5 LINE L1 -1993 5815 5696 476 292 23 41 chr12 14166530 14166749 -129619706 + L1ME LINE L1 5582 5796 -325 219 167 0 0 chr12 14166840 14166882 -129619573 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 288 0 0 0 chr12 14166882 14166914 -129619541 + (GA)n Simple_repeat Simple_repeat 2 33 0 1199 144 0 36 chr12 14166914 14167109 -129619346 - AluJo SINE Alu -39 273 86 402 285 100 102 chr12 14167109 14167403 -129619052 - LTR33A LTR ERVL -40 481 176 2265 120 0 3 chr12 14167403 14167704 -129618751 - AluSg SINE Alu -10 300 1 402 285 100 102 chr12 14167704 14167836 -129618619 - LTR33A LTR ERVL -345 176 45 1539 160 89 7 chr12 14167917 14168186 -129618269 + AluJb SINE Alu 3 293 -19 958 130 51 17 chr12 14168189 14168366 -129618089 - L1MA8 LINE L1 -5 6286 6104 561 262 0 8 chr12 14168368 14168494 -129617961 + MER2 DNA MER2_type 7 131 -214 1258 177 129 45 chr12 14168495 14168806 -129617649 - MER2 DNA MER2_type -1 344 8 432 133 36 0 chr12 14168813 14168896 -129617559 + MER2 DNA MER2_type 128 213 -132 2142 117 0 0 chr12 14169006 14169314 -129617141 - AluSx SINE Alu 0 308 1 647 112 65 0 chr12 14169314 14169421 -129617034 - L1MA8 LINE L1 -183 6108 5995 27 0 0 0 chr12 14169634 14169661 -129616794 + AT_rich Low_complexity Low_complexity 1 27 0 545 255 97 33 chr12 14169879 14170128 -129616327 - MLT1J2 LTR MaLR -11 427 169 562 177 10 0 chr12 14170158 14170254 -129616201 - MSTB1 LTR MaLR -81 351 255 787 153 0 0 chr12 14170285 14170403 -129616052 - FLAM_A SINE Alu -15 118 1 1982 151 3 10 chr12 14170640 14170951 -129615504 + AluJb SINE Alu 1 309 -3 1953 132 26 16 chr12 14171613 14171916 -129614539 + AluSx SINE Alu 1 306 -6 2088 143 0 0 chr12 14172015 14172308 -129614147 + AluSx SINE Alu 1 293 -19 1363 183 78 48 chr12 14172312 14172431 -129614024 - MER2 DNA MER2_type -1 343 229 1974 139 20 0 chr12 14172431 14172733 -129613722 + AluSx SINE Alu 1 308 -4 1363 183 78 48 chr12 14172733 14172847 -129613608 - MER2 DNA MER2_type -115 229 120 2220 97 7 3 chr12 14172847 14173136 -129613319 - AluSg SINE Alu -20 290 1 1363 183 78 48 chr12 14173136 14173234 -129613221 - MER2 DNA MER2_type -224 120 1 1607 177 20 20 chr12 14173402 14173530 -129612925 + AluJo SINE Alu 1 128 -184 216 0 0 0 chr12 14173530 14173554 -129612901 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1607 177 20 20 chr12 14173554 14173724 -129612731 + AluJo SINE Alu 127 299 -13 8903 128 89 25 chr12 14173931 14173997 -129612458 + L1MC1 LINE L1 4 64 -6362 1916 176 0 3 chr12 14173997 14174303 -129612152 + AluJb SINE Alu 1 305 -7 8903 128 89 25 chr12 14174303 14175179 -129611276 + L1MC1 LINE L1 64 883 -5543 2193 106 10 0 chr12 14175179 14175472 -129610983 + AluSg SINE Alu 1 296 -14 8903 128 89 25 chr12 14175472 14176294 -129610161 + L1MC1 LINE L1 883 1975 -4451 2919 211 44 8 chr12 14176759 14177987 -129608468 + L1MC1 LINE L1 1956 3229 -3197 1096 144 25 0 chr12 14177987 14178147 -129608308 + FRAM SINE Alu 1 163 -13 891 204 20 59 chr12 14178155 14178330 -129608125 + L1MC1 LINE L1 3228 3387 -3039 1592 188 4 7 chr12 14178330 14178601 -129607854 + AluJo SINE Alu 1 270 -42 891 204 20 59 chr12 14178601 14178729 -129607726 + L1MC1 LINE L1 3387 3519 -2907 6014 171 22 35 chr12 14178730 14179314 -129607141 + L1MC1 LINE L1 5006 5596 -1017 2228 131 0 3 chr12 14179314 14179626 -129606829 + AluSx SINE Alu 1 311 -1 6014 171 22 35 chr12 14179626 14180660 -129605795 + L1MC1 LINE L1 5596 6605 -8 1877 174 0 13 chr12 14180773 14181078 -129605377 + AluJo SINE Alu 5 305 -7 1028 137 23 137 chr12 14182553 14182816 -129603639 - MER46A DNA MER2_type 0 236 4 1773 152 9 61 chr12 14182950 14183279 -129603176 - AluJb SINE Alu 0 312 1 1826 158 0 35 chr12 14183360 14183677 -129602778 - AluJo SINE Alu -6 306 1 261 242 77 22 chr12 14183677 14183768 -129602687 + MLT1H LTR MaLR 110 205 -344 492 320 91 55 chr12 14184024 14184464 -129601991 + L2 LINE L2 2807 3262 -10 634 276 126 20 chr12 14184534 14184862 -129601593 + L1ME LINE L1 5534 5819 -302 21 71 0 0 chr12 14185100 14185142 -129601313 + AT_rich Low_complexity Low_complexity 1 42 0 974 122 6 45 chr12 14185299 14185455 -129601000 - AluJb SINE Alu -17 295 146 406 141 0 9 chr12 14185459 14185534 -129600921 - AluS SINE Alu -243 58 1 1889 152 16 10 chr12 14185623 14185933 -129600522 - AluJb SINE Alu 0 312 1 2210 102 27 3 chr12 14186210 14186505 -129599950 + AluSq SINE Alu 1 302 -11 939 93 93 47 chr12 14187423 14187595 -129598860 - AluSg/x SINE Alu -52 258 79 234 0 0 0 chr12 14188154 14188180 -129598275 + (TG)n Simple_repeat Simple_repeat 1 26 0 1416 199 28 92 chr12 14188196 14188420 -129598035 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 14188420 14188480 -129597975 + (GA)n Simple_repeat Simple_repeat 1 60 0 1416 199 28 92 chr12 14188480 14188647 -129597808 - MLT1A2 LTR MaLR -190 184 8 1293 83 10 57 chr12 14188783 14188998 -129597457 + AluY SINE Alu 99 304 0 1902 114 0 94 chr12 14189008 14189350 -129597105 + AluJo SINE Alu 1 310 -2 322 306 91 41 chr12 14189419 14189540 -129596915 + MIR SINE MIR 5 132 -76 293 269 130 19 chr12 14189675 14189783 -129596672 - MIR SINE MIR -110 152 33 1446 143 64 57 chr12 14190473 14190593 -129595862 + AluJb SINE Alu 1 119 -193 2303 100 3 0 chr12 14190593 14190882 -129595573 + AluSp SINE Alu 1 290 -23 1446 143 64 57 chr12 14190882 14191041 -129595414 + AluJb SINE Alu 119 282 -30 2518 71 0 0 chr12 14191593 14191903 -129594552 + AluY SINE Alu 1 310 -1 2206 105 26 0 chr12 14192415 14192719 -129593736 + AluSx SINE Alu 1 312 0 1665 110 42 4 chr12 14193060 14193297 -129593158 + AluSx SINE Alu 51 296 -16 180 296 68 11 chr12 14193473 14193561 -129592894 - MIR SINE MIR -46 216 124 1139 198 108 24 chr12 14194355 14194643 -129591812 - MLT1C LTR MaLR -17 450 139 1594 170 49 10 chr12 14194798 14195086 -129591369 - AluJo SINE Alu -11 301 3 2478 70 0 16 chr12 14195352 14195668 -129590787 - AluY SINE Alu 0 311 1 2290 112 0 7 chr12 14195723 14196027 -129590428 - AluSq SINE Alu -11 302 1 503 204 277 0 chr12 14197150 14197287 -129589168 + MER96 DNA MER1_type 1 175 0 898 142 14 0 chr12 14197394 14197542 -129588913 + FAM SINE Alu 1 47 -2 1258 154 34 44 chr12 14197886 14198179 -129588276 + MER33 DNA MER1_type 4 293 -31 1301 173 143 8 chr12 14198179 14198445 -129588010 + AluJo SINE Alu 1 302 0 774 212 24 18 chr12 14198450 14198615 -129587840 + FRAM SINE Alu 1 166 0 189 315 55 0 chr12 14198675 14198748 -129587707 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 14199977 14200038 -129586417 + CT-rich Low_complexity Low_complexity 1 62 0 2376 84 3 0 chr12 14200889 14201186 -129585269 - AluSp SINE Alu -15 298 1 577 219 138 109 chr12 14202194 14202254 -129584201 + MER58A DNA MER1_type 9 66 -2354 2114 79 11 29 chr12 14202254 14202570 -129583885 - AluSq SINE Alu 0 322 12 577 219 138 109 chr12 14202570 14202718 -129583737 + MER58A DNA MER1_type 66 224 0 1829 180 0 0 chr12 14202934 14203228 -129583227 - AluJb SINE Alu -18 294 1 488 181 65 7 chr12 14203292 14203430 -129583025 - AluSg/x SINE Alu -8 301 156 2017 144 0 0 chr12 14203747 14204032 -129582423 + AluSx SINE Alu 1 285 -27 210 37 0 0 chr12 14204039 14204066 -129582389 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 299 281 141 8 chr12 14204082 14204203 -129582252 + MER5B DNA MER1_type 1 137 -41 612 180 0 0 chr12 14204337 14204459 -129581996 + AluJb SINE Alu 183 304 0 2317 112 0 0 chr12 14204694 14204998 -129581457 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr12 14205073 14205096 -129581359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2045 127 0 7 chr12 14205099 14205383 -129581072 - AluSx SINE Alu -30 282 1 1913 161 13 7 chr12 14205394 14205704 -129580751 - AluJo SINE Alu 0 312 1 229 248 234 21 chr12 14210181 14210326 -129576129 + MIR SINE MIR 21 196 -66 878 230 5 11 chr12 14210346 14210533 -129575922 + MER5A DNA MER1_type 4 189 0 30 45 0 0 chr12 14210856 14210900 -129575555 + AT_rich Low_complexity Low_complexity 1 44 0 2294 100 0 7 chr12 14211775 14212075 -129574380 - AluSx SINE Alu -14 298 1 180 260 20 0 chr12 14212413 14212463 -129573992 + L2 LINE L2 3257 3307 -6 273 209 44 44 chr12 14213625 14213716 -129572739 - MLT1J LTR MaLR -383 128 38 510 261 156 18 chr12 14214759 14214977 -129571478 - MIR SINE MIR 0 262 15 2197 95 16 33 chr12 14214977 14215281 -129571174 - AluSx SINE Alu -9 303 5 2167 126 0 0 chr12 14215305 14215599 -129570856 - AluSq SINE Alu -19 294 1 1670 164 0 15 chr12 14215599 14215873 -129570582 + AluJb SINE Alu 27 296 -16 2332 94 17 0 chr12 14216057 14216355 -129570100 + AluSx SINE Alu 1 303 -9 510 261 156 18 chr12 14216355 14216573 -129569882 + MIR SINE MIR 15 262 0 1276 163 8 17 chr12 14216849 14217088 -129569367 + AluSx SINE Alu 17 253 -59 2476 78 3 0 chr12 14217969 14218275 -129568180 - AluSc SINE Alu -2 307 1 2583 57 7 0 chr12 14218510 14218811 -129567644 + AluY SINE Alu 1 303 -8 1882 167 16 0 chr12 14219388 14219694 -129566761 - AluJb SINE Alu -1 311 1 233 54 71 36 chr12 14220048 14220104 -129566351 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2104 140 13 0 chr12 14220124 14220431 -129566024 - AluSx SINE Alu -1 311 1 1706 155 6 44 chr12 14221062 14221378 -129565077 + AluJo SINE Alu 1 304 -8 681 206 97 151 chr12 14221708 14221877 -129564578 - L2 LINE L2 0 3313 3137 926 129 0 0 chr12 14221877 14222009 -129564446 + FLAM_C SINE Alu 2 133 0 681 206 97 151 chr12 14222009 14222062 -129564393 - L2 LINE L2 -176 3137 3083 1818 194 53 55 chr12 14222062 14222568 -129563887 - MLT1D LTR MaLR 0 505 1 681 206 97 151 chr12 14222568 14222776 -129563679 - L2 LINE L2 -230 3083 2905 2160 110 20 10 chr12 14222785 14223084 -129563371 - AluSx SINE Alu -10 302 1 853 101 0 164 chr12 14223086 14223245 -129563210 - AluSq/x SINE Alu -179 133 1 3065 221 110 92 chr12 14223245 14223899 -129562556 - L2 LINE L2 -601 2713 2073 606 88 0 0 chr12 14223899 14223979 -129562476 + AluSc SINE Alu 2 81 -228 1981 117 0 0 chr12 14223979 14224244 -129562211 + AluSg1 SINE Alu 36 300 -9 3065 221 110 92 chr12 14224244 14224257 -129562198 - L2 LINE L2 -1241 2073 2062 1521 118 25 0 chr12 14224257 14224483 -129561972 + AluSc SINE Alu 72 302 0 3065 221 110 92 chr12 14224483 14224752 -129561703 - L2 LINE L2 -1252 2062 1800 2466 75 3 0 chr12 14224752 14225058 -129561397 - AluSc SINE Alu -2 307 1 3065 221 110 92 chr12 14225058 14225478 -129560977 - L2 LINE L2 -1514 1800 1247 627 148 0 0 chr12 14225529 14225630 -129560825 + FLAM_A SINE Alu 38 138 -4 2248 114 0 3 chr12 14225633 14225931 -129560524 + AluSx SINE Alu 1 297 -15 1339 296 84 18 chr12 14225970 14226484 -129559971 - LTR67 LTR ERVL -7 550 3 1988 108 54 11 chr12 14226689 14226968 -129559487 + AluSx SINE Alu 1 291 -21 192 347 97 48 chr12 14227588 14227712 -129558743 - L2 LINE L2 0 3272 3143 255 326 0 11 chr12 14227734 14227823 -129558632 - L2 LINE L2 -726 2588 2501 853 165 0 0 chr12 14228107 14228240 -129558215 + FLAM_C SINE Alu 1 133 0 2135 90 14 0 chr12 14228251 14228558 -129557897 + AluSg SINE Alu 1 311 0 388 331 137 23 chr12 14228678 14229065 -129557390 + L2 LINE L2 2354 2784 -530 2352 78 0 14 chr12 14229298 14229619 -129556836 + AluSq SINE Alu 11 313 0 960 221 32 47 chr12 14230152 14230253 -129556202 - ORSL DNA AcHobo -9 266 165 1680 132 117 8 chr12 14230253 14230518 -129555937 + AluSg1 SINE Alu 1 294 -15 802 166 25 25 chr12 14230525 14230688 -129555767 + FRAM SINE Alu 4 166 0 960 221 32 47 chr12 14230688 14230831 -129555624 - ORSL DNA AcHobo -116 159 18 2242 126 0 0 chr12 14231810 14232111 -129554344 - AluSx SINE Alu -11 301 1 312 91 0 0 chr12 14232598 14232642 -129553813 + (TA)n Simple_repeat Simple_repeat 1 44 0 2143 126 0 0 chr12 14232659 14232944 -129553511 - AluSx SINE Alu -27 285 1 4041 93 4 20 chr12 14233140 14233697 -129552758 - LTR14 LTR ERVK 0 548 1 2985 133 114 0 chr12 14233702 14234175 -129552280 + MER1A DNA MER1_type 1 527 0 450 224 119 48 chr12 14234175 14234385 -129552070 + L2 LINE L2 2626 2850 -464 2273 111 3 0 chr12 14234547 14234844 -129551611 - AluSx SINE Alu -14 298 1 354 303 201 15 chr12 14235278 14235453 -129551002 + L2 LINE L2 2925 3066 -247 1646 145 14 18 chr12 14235453 14235735 -129550720 - AluJb SINE Alu -21 291 11 354 303 201 15 chr12 14235735 14235883 -129550572 + L2 LINE L2 3066 3308 -5 664 272 65 23 chr12 14236600 14236817 -129549638 + MIR SINE MIR 28 253 -9 291 250 10 48 chr12 14237488 14237508 -129548947 + L3 LINE CR1 771 790 -787 2155 103 16 41 chr12 14237508 14237828 -129548627 - AluSx SINE Alu 0 312 1 291 250 10 48 chr12 14237828 14237911 -129548544 + L3 LINE CR1 790 870 -707 223 221 19 39 chr12 14238015 14238119 -129548336 + (TTA)n Simple_repeat Simple_repeat 2 103 0 298 233 0 0 chr12 14238135 14238195 -129548260 + L3 LINE CR1 1251 1310 -267 227 241 51 101 chr12 14238416 14238574 -129547881 - L2 LINE L2 -233 3039 2890 1499 149 58 0 chr12 14239061 14239337 -129547118 + L1MA7 LINE L1 5995 6286 -5 365 287 48 8 chr12 14240073 14240220 -129546235 - MIR SINE MIR -64 144 37 674 171 0 0 chr12 14240286 14240397 -129546058 + FLAM_C SINE Alu 5 115 -28 211 299 37 56 chr12 14240450 14240557 -129545898 - L2 LINE L2 -19 3294 3190 2499 65 0 0 chr12 14241091 14241385 -129545070 + AluY SINE Alu 1 294 -17 2310 124 11 8 chr12 14241500 14241854 -129544601 - THE1A LTR MaLR 0 355 1 295 292 132 7 chr12 14241931 14242075 -129544380 + L2 LINE L2 1948 2109 -1205 306 266 12 68 chr12 14242182 14242320 -129544135 + MER5A DNA MER1_type 27 167 -22 231 292 34 22 chr12 14242349 14242438 -129544017 + L2 LINE L2 2221 2310 -1004 2240 92 3 20 chr12 14243349 14243652 -129542803 - AluSp SINE Alu -15 298 1 233 182 0 0 chr12 14243948 14243992 -129542463 - L2 LINE L2 -9 3304 3261 1645 130 146 21 chr12 14245671 14246001 -129540454 - THE1C LTR MaLR -4 371 1 22 0 0 0 chr12 14247206 14247228 -129539227 + AT_rich Low_complexity Low_complexity 1 22 0 2173 57 23 66 chr12 14247817 14248118 -129538337 - AluY SINE Alu -23 288 1 953 206 37 32 chr12 14248144 14248362 -129538093 - MER20 DNA MER1_type 0 219 1 347 324 47 29 chr12 14248405 14248575 -129537880 - MIR SINE MIR -70 192 20 246 287 64 0 chr12 14249051 14249145 -129537310 + MIR SINE MIR 134 233 -29 1595 169 40 33 chr12 14249298 14249600 -129536855 - AluSx SINE Alu -8 304 1 1878 180 3 7 chr12 14249602 14249908 -129536547 - AluJo SINE Alu -7 305 1 351 326 37 7 chr12 14250293 14250428 -129536027 - MIR SINE MIR -75 187 49 335 246 32 63 chr12 14250517 14250643 -129535812 + MIR SINE MIR 79 200 -62 1802 141 10 87 chr12 14250664 14250716 -129535739 + MER46B DNA MER2_type 3 57 -2674 2170 82 65 0 chr12 14250716 14251008 -129535447 - AluSp SINE Alu -1 312 2 1802 141 10 87 chr12 14251008 14251344 -129535111 + MER46B DNA MER2_type 57 236 0 341 230 89 37 chr12 14251512 14251647 -129534808 - L1ME4a LINE L1 -3 6118 5977 615 273 128 54 chr12 14251672 14252156 -129534299 - L1ME4a LINE L1 -251 5870 5351 26 0 0 0 chr12 14252805 14252831 -129533624 + AT_rich Low_complexity Low_complexity 1 26 0 2073 79 7 39 chr12 14253022 14253327 -129533128 + AluY SINE Alu 1 295 -16 1820 159 10 0 chr12 14253481 14253776 -129532679 - AluJb SINE Alu -14 298 1 2067 127 7 0 chr12 14253778 14254085 -129532370 - AluSx SINE Alu -3 309 1 2057 118 3 0 chr12 14254087 14254376 -129532079 - AluSx SINE Alu -22 290 1 2249 45 18 0 chr12 14254871 14255157 -129531298 + AluY SINE Alu 1 291 -20 1516 231 56 31 chr12 14256100 14256510 -129529945 - MLT1C LTR MaLR -1 466 43 2341 100 39 30 chr12 14256510 14256871 -129529584 + THE1B LTR MaLR 1 364 0 1516 231 56 31 chr12 14256871 14256910 -129529545 - MLT1C LTR MaLR -424 43 6 2404 53 0 3 chr12 14257232 14257533 -129528922 + AluY SINE Alu 1 300 -11 347 181 0 28 chr12 14258796 14258868 -129527587 + MIR SINE MIR 80 149 -113 2025 123 24 0 chr12 14258898 14259191 -129527264 - AluSx SINE Alu -12 300 1 186 412 35 0 chr12 14259250 14259335 -129527120 - L2 LINE L2 -27 3245 3158 417 259 292 0 chr12 14259537 14259722 -129526733 + MIR SINE MIR 23 261 -1 250 330 62 9 chr12 14259746 14259858 -129526597 - MIR SINE MIR -144 118 1 195 129 0 0 chr12 14259864 14259895 -129526560 + (TG)n Simple_repeat Simple_repeat 2 32 0 1606 183 3 7 chr12 14261024 14261308 -129525147 + AluJo SINE Alu 5 287 -25 2356 76 3 0 chr12 14261485 14261787 -129524668 - AluSp SINE Alu -9 304 2 2101 108 3 3 chr12 14262253 14262548 -129523907 + AluSx SINE Alu 1 295 -17 1454 114 0 0 chr12 14263327 14263537 -129522918 + AluSg/x SINE Alu 83 292 -18 1921 125 3 3 chr12 14264157 14264444 -129522011 - AluSc SINE Alu -22 287 1 2067 127 0 0 chr12 14264448 14264748 -129521707 - AluSc SINE Alu -9 300 1 712 146 0 0 chr12 14264748 14264858 -129521597 - AluSg/x SINE Alu -5 305 196 229 200 22 0 chr12 14265204 14265249 -129521206 + Zaphod DNA AcHobo 1 46 -3985 445 152 25 0 chr12 14265331 14265410 -129521045 - L1ME LINE L1 -623 5541 5461 373 163 22 0 chr12 14265439 14265531 -129520924 + CT-rich Low_complexity Low_complexity 1 94 0 880 134 0 0 chr12 14265580 14265707 -129520748 + FLAM_C SINE Alu 5 131 -2 648 195 14 109 chr12 14265724 14265945 -129520510 - L1ME1 LINE L1 -58 6108 5909 993 186 0 0 chr12 14265945 14266112 -129520343 - AluSp SINE Alu -13 300 134 700 175 21 0 chr12 14266112 14266255 -129520200 - L1ME1 LINE L1 -257 5909 5764 486 189 0 0 chr12 14266245 14266340 -129520115 - L1 LINE L1 -2439 3707 3613 * 1459 99 5 24 chr12 14266340 14266552 -129519903 + AluSp SINE Alu 1 208 -105 1343 142 58 0 chr12 14266683 14266908 -129519547 - AluJb SINE Alu -74 238 1 576 225 8 23 chr12 14267106 14267235 -129519220 + FLAM_A SINE Alu 1 127 -6 431 233 25 75 chr12 14267235 14267386 -129519069 + MLT1E2 LTR MaLR 95 239 -266 1877 196 35 51 chr12 14267435 14267888 -129518567 + MLT1D LTR MaLR 1 446 -59 1873 123 27 0 chr12 14267890 14268182 -129518273 + AluJo SINE Alu 1 300 -12 1895 95 0 0 chr12 14268183 14268436 -129518019 + AluSq SINE Alu 1 253 -60 1686 133 50 0 chr12 14269116 14269395 -129517060 + AluSx SINE Alu 1 293 -19 2207 81 0 0 chr12 14270070 14270394 -129516061 + AluSq SINE Alu 1 324 0 2014 147 28 17 chr12 14270497 14270852 -129515603 - L1PA16 LINE L1 -5 6161 5803 807 222 20 0 chr12 14270978 14271131 -129515324 - FRAM SINE Alu -10 156 1 842 102 177 0 chr12 14272353 14272500 -129513955 - L1MA4 LINE L1 -14 6286 6114 3713 140 44 16 chr12 14273159 14273767 -129512688 + MER51A LTR ERV1 1 625 -9 2303 91 3 0 chr12 14273947 14274256 -129512199 + AluSp SINE Alu 1 310 -3 1754 156 0 44 chr12 14274630 14274945 -129511510 - AluJb SINE Alu -11 301 1 1542 201 0 3 chr12 14275210 14275503 -129510952 - AluJb SINE Alu -16 296 5 2043 195 87 9 chr12 14275542 14276004 -129510451 + MLT1D LTR MaLR 1 498 -7 388 277 190 40 chr12 14276987 14277240 -129509215 + HAL1 LINE L1 821 1111 -1396 1607 144 10 48 chr12 14277240 14277553 -129508902 + AluJo SINE Alu 1 301 -11 275 257 92 9 chr12 14277660 14277769 -129508686 + HAL1 LINE L1 1405 1522 -985 1512 118 54 0 chr12 14277789 14278010 -129508445 + AluSq SINE Alu 1 233 -80 1512 169 4 4 chr12 14278191 14278463 -129507992 - AluSg SINE Alu -37 273 2 1822 98 48 41 chr12 14278496 14278791 -129507664 + AluSc SINE Alu 4 300 -9 438 206 0 0 chr12 14278844 14278912 -129507543 - Tigger7 DNA MER2_type 0 2487 2420 562 167 0 0 chr12 14278951 14279047 -129507408 + L1MB8 LINE L1 6077 6172 -6 417 231 103 51 chr12 14279063 14279258 -129507197 + L1ME3A LINE L1 5963 6167 -3 2178 110 0 0 chr12 14279642 14279941 -129506514 + AluSx SINE Alu 1 299 -13 1272 124 112 27 chr12 14279951 14280210 -129506245 + L1MB4 LINE L1 5894 6174 -6 895 133 17 69 chr12 14280684 14280857 -129505598 - MLT2C2 LTR ERVL 0 464 301 1696 179 3 3 chr12 14280862 14281170 -129505285 - AluJb SINE Alu -4 308 1 694 275 128 25 chr12 14281184 14281667 -129504788 - L1M4 LINE L1 -866 5280 4748 1833 133 3 23 chr12 14281669 14281971 -129504484 - AluJo SINE Alu -16 296 1 1828 116 67 0 chr12 14281998 14282283 -129504172 + AluSx SINE Alu 1 304 -8 311 226 21 0 chr12 14282364 14282444 -129504011 + AluJ/monomer SINE Alu 1 53 -247 213 121 0 0 chr12 14282493 14282526 -129503929 + (T)n Simple_repeat Simple_repeat 1 33 0 1948 141 0 0 chr12 14282835 14283132 -129503323 - AluSq SINE Alu -16 297 1 1962 109 0 0 chr12 14283273 14283540 -129502915 - AluSq SINE Alu -46 267 1 1783 157 0 17 chr12 14283540 14283839 -129502616 - AluJb SINE Alu -18 294 1 2029 137 0 3 chr12 14284238 14284544 -129501911 - AluSx SINE Alu -7 305 1 373 218 0 0 chr12 14284863 14284941 -129501514 - L1MCc LINE L1 -2554 4387 4310 1670 188 0 25 chr12 14284955 14285275 -129501180 - AluJo SINE Alu 0 312 1 1729 248 80 50 chr12 14285275 14285440 -129501015 - L1MCc LINE L1 -3167 3774 3615 1985 147 0 0 chr12 14285440 14285752 -129500703 + AluSx SINE Alu 1 312 0 1729 248 80 50 chr12 14285752 14286179 -129500276 - L1MCc LINE L1 -3326 3615 3202 2283 84 0 0 chr12 14286179 14286478 -129499977 + AluSg SINE Alu 1 299 -11 1729 248 80 50 chr12 14286478 14286525 -129499930 - L1MCc LINE L1 -3739 3202 3158 1868 168 3 0 chr12 14286525 14286828 -129499627 - AluSx SINE Alu -8 304 1 1729 248 80 50 chr12 14286828 14286987 -129499468 - L1MCc LINE L1 -3783 3158 2950 1256 176 0 9 chr12 14286991 14287213 -129499242 - AluJo SINE Alu -12 300 81 390 233 110 80 chr12 14287213 14287317 -129499138 - L1MCc LINE L1 -4130 2992 2893 2348 121 69 55 chr12 14287317 14287496 -129498959 + MSTA LTR MaLR 1 176 -252 2472 74 0 0 chr12 14287496 14287808 -129498647 + AluSx SINE Alu 1 312 0 2348 121 69 55 chr12 14287808 14288050 -129498405 + MSTA LTR MaLR 176 428 0 390 233 110 80 chr12 14288050 14288360 -129498095 - L1MCc LINE L1 -4229 2893 2594 1632 165 7 20 chr12 14288360 14288663 -129497792 + AluJo SINE Alu 1 299 -13 390 233 110 80 chr12 14288663 14288853 -129497602 - L1MCc LINE L1 -4528 2594 2343 2173 104 0 0 chr12 14288853 14289160 -129497295 + AluY SINE Alu 1 307 -4 390 233 110 80 chr12 14289160 14289215 -129497240 - L1MCc LINE L1 -4779 2343 2291 509 81 0 27 chr12 14289250 14289324 -129497131 - THE1B LTR MaLR 0 364 293 1023 76 0 0 chr12 14289324 14289455 -129497000 + AluY SINE Alu 1 131 -180 1008 130 37 0 chr12 14289462 14289624 -129496831 - THE1B LTR MaLR -58 306 139 1165 103 39 0 chr12 14290390 14290546 -129495909 - THE1B LTR MaLR -202 162 1 854 272 77 6 chr12 14290562 14290931 -129495524 - L1MCc LINE L1 -4840 2282 1678 1977 150 24 45 chr12 14290937 14291311 -129495144 + Tigger3b DNA MER2_type 1 366 -865 3997 106 41 26 chr12 14291311 14291347 -129495108 + Tigger3b DNA MER2_type 561 595 -2434 2054 129 10 3 chr12 14291347 14291657 -129494798 + AluSx SINE Alu 1 312 0 3997 106 41 26 chr12 14291657 14291847 -129494608 + Tigger3b DNA MER2_type 595 781 -2248 1934 124 11 0 chr12 14291847 14292162 -129494293 + AluSp SINE Alu 1 318 0 3997 106 41 26 chr12 14292162 14292593 -129493862 + Tigger3b DNA MER2_type 781 1230 -2 489 273 53 78 chr12 14292595 14292684 -129493771 - L1MCc LINE L1 -4889 1534 1444 2488 44 0 0 chr12 14292684 14292980 -129493475 - AluY SINE Alu -15 296 1 2181 106 0 3 chr12 14292987 14293289 -129493166 - AluSq SINE Alu -12 301 1 489 273 53 78 chr12 14293289 14293321 -129493134 - L1MCc LINE L1 -4985 1438 1407 2374 61 3 0 chr12 14293321 14293616 -129492839 - AluY SINE Alu -15 296 1 489 273 53 78 chr12 14293616 14293887 -129492568 - L1MCc LINE L1 -5016 1407 1272 772 198 48 210 chr12 14294155 14294488 -129491967 - L1MC4 LINE L1 -1134 6759 6396 222 250 0 97 chr12 14295230 14295302 -129491153 - L2 LINE L2 -2 3311 3247 2255 87 0 0 chr12 14295447 14295733 -129490722 + AluSg SINE Alu 1 286 -24 313 323 16 24 chr12 14295784 14295908 -129490547 + L2 LINE L2 33 155 -3159 1502 158 74 28 chr12 14295962 14296099 -129490356 + AluJb SINE Alu 1 130 -182 1942 117 3 3 chr12 14296099 14296417 -129490038 + AluSq SINE Alu 3 320 0 1502 158 74 28 chr12 14296417 14296563 -129489892 + AluJb SINE Alu 130 298 -14 186 43 0 0 chr12 14296760 14296783 -129489672 + (TA)n Simple_repeat Simple_repeat 1 23 0 196 350 51 51 chr12 14296799 14296916 -129489539 - L2 LINE L2 -18 3254 3138 2128 92 14 3 chr12 14297007 14297299 -129489156 - AluSg SINE Alu -15 295 1 21 0 0 0 chr12 14297332 14297353 -129489102 + AT_rich Low_complexity Low_complexity 1 21 0 2200 106 0 10 chr12 14297489 14297800 -129488655 - AluSx SINE Alu -2 310 3 600 228 55 0 chr12 14297883 14298049 -129488406 - L1ME1 LINE L1 -6 6160 6001 1302 187 15 89 chr12 14298075 14298268 -129488187 - AluJo SINE Alu 0 302 96 185 62 0 31 chr12 14298268 14298300 -129488155 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1875 145 0 0 chr12 14298300 14298583 -129487872 - AluJo SINE Alu -29 283 1 1302 187 15 89 chr12 14298583 14298714 -129487741 - AluJo SINE Alu -204 98 1 334 344 0 0 chr12 14298720 14298810 -129487645 - L1MC4 LINE L1 -1339 6703 6614 * 377 300 0 0 chr12 14298776 14298866 -129487589 + L1MC4 LINE L1 6614 6703 -1339 359 244 8 89 chr12 14298824 14298890 -129487565 - L1MC3 LINE L1 -1139 6646 6593 * 2108 88 0 14 chr12 14298890 14299173 -129487282 - AluSg SINE Alu -31 279 1 359 244 8 89 chr12 14299173 14299229 -129487226 - L1MC3 LINE L1 -1192 6593 6534 1321 83 78 29 chr12 14300075 14300279 -129486176 - AluSg/x SINE Alu -18 292 79 187 154 0 0 chr12 14300304 14300343 -129486112 + MIR SINE MIR 166 204 -58 269 203 0 17 chr12 14300344 14300403 -129486052 - Tigger5 DNA MER2_type -1 2322 2265 232 241 0 0 chr12 14300386 14300440 -129486015 - Tigger5 DNA MER2_type -2269 54 1 * 1692 152 30 10 chr12 14300524 14300821 -129485634 - AluJb SINE Alu 0 312 10 2315 57 0 0 chr12 14301000 14301305 -129485150 + AluY SINE Alu 1 305 0 627 263 98 24 chr12 14301553 14301758 -129484697 - MIR SINE MIR 0 262 43 2395 112 102 37 chr12 14301764 14302004 -129484451 - MSTA LTR MaLR 0 428 150 2155 112 0 0 chr12 14302004 14302307 -129484148 + AluSx SINE Alu 1 303 -9 2395 112 102 37 chr12 14302307 14302468 -129483987 - MSTA LTR MaLR -278 150 1 2534 61 7 3 chr12 14302485 14302795 -129483660 + AluY SINE Alu 1 311 0 807 317 16 95 chr12 14303017 14303368 -129483087 + L2 LINE L2 2853 3162 -110 2863 3 0 0 chr12 14303368 14303670 -129482785 + AluYa8 SINE Alu 1 302 -8 807 317 16 95 chr12 14303670 14303769 -129482686 + L2 LINE L2 3162 3267 -5 25 31 0 0 chr12 14304170 14304202 -129482253 + AT_rich Low_complexity Low_complexity 1 32 0 1781 194 50 31 chr12 14304327 14304507 -129481948 + MLT1C LTR MaLR 1 176 -291 1883 118 0 0 chr12 14304507 14304753 -129481702 + AluSc SINE Alu 39 284 -25 189 0 0 0 chr12 14304753 14304774 -129481681 + (GA)n Simple_repeat Simple_repeat 2 22 0 1781 194 50 31 chr12 14304774 14305050 -129481405 + MLT1C LTR MaLR 175 467 0 1091 165 0 0 chr12 14305062 14305226 -129481229 - AluJb SINE Alu -14 298 135 2271 89 0 35 chr12 14305787 14306101 -129480354 - AluSx SINE Alu -9 303 1 1374 86 6 0 chr12 14306112 14306287 -129480168 + AluSq SINE Alu 130 305 -8 688 204 80 11 chr12 14306322 14306498 -129479957 + LTR41 LTR ERVL 1 188 -585 312 311 83 44 chr12 14306868 14307096 -129479359 + LTR41 LTR ERVL 508 744 -29 232 154 19 19 chr12 14307118 14307170 -129479285 + LTR33A LTR ERVL 472 523 0 280 291 13 0 chr12 14307633 14307712 -129478743 + MIR SINE MIR 164 243 -19 471 35 0 0 chr12 14307731 14307788 -129478667 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 289 295 116 0 chr12 14307791 14307886 -129478569 - L2 LINE L2 -22 3250 3145 2330 103 0 0 chr12 14308237 14308539 -129477916 - AluSq SINE Alu -10 303 2 2179 81 11 73 chr12 14308539 14308687 -129477768 - L1P4 LINE L1 -553 5612 5456 2281 84 7 10 chr12 14308687 14308985 -129477470 + AluSx SINE Alu 2 298 -14 2179 81 11 73 chr12 14308985 14309206 -129477249 - L1P4 LINE L1 -709 5456 5266 468 274 29 39 chr12 14309206 14309410 -129477045 - MLT1F LTR MaLR -338 204 3 366 243 35 69 chr12 14309424 14309568 -129476887 - L2 LINE L2 -207 3065 2927 * 480 267 61 14 chr12 14309564 14309749 -129476706 + MIR SINE MIR 18 212 -40 185 213 106 0 chr12 14309813 14309860 -129476595 + MIR SINE MIR 211 262 0 2222 92 61 0 chr12 14309940 14310234 -129476221 + AluSx SINE Alu 1 312 0 333 311 31 71 chr12 14310235 14310357 -129476098 - L2 LINE L2 -453 2861 2736 1928 148 3 0 chr12 14310357 14310647 -129475808 - AluJb SINE Alu -21 291 1 333 311 31 71 chr12 14310647 14310849 -129475606 - L2 LINE L2 -578 2736 2550 183 279 0 16 chr12 14310837 14310898 -129475557 - MIR SINE MIR -96 112 53 * 1997 130 41 0 chr12 14311861 14312153 -129474302 - AluSx SINE Alu -8 304 1 186 323 32 0 chr12 14312250 14312312 -129474143 - MIR SINE MIR -111 151 88 416 292 84 7 chr12 14312361 14312515 -129473940 - MIR SINE MIR -49 213 48 192 351 99 9 chr12 14312591 14312702 -129473753 + L2 LINE L2 3149 3269 -3 393 297 23 8 chr12 14313100 14313228 -129473227 + MIR SINE MIR 90 219 -43 2197 124 0 3 chr12 14313338 14313636 -129472819 - AluSx SINE Alu -15 297 1 2368 69 25 3 chr12 14313812 14314130 -129472325 + LTR8 LTR ERV1 1 325 -366 180 0 0 0 chr12 14314789 14314809 -129471646 + (A)n Simple_repeat Simple_repeat 1 20 0 2751 88 11 0 chr12 14314809 14315184 -129471271 + LTR8 LTR ERV1 313 691 0 2511 78 0 0 chr12 14315353 14315661 -129470794 + AluY SINE Alu 1 308 -3 217 250 87 54 chr12 14315695 14315787 -129470668 + L2 LINE L2 3201 3295 -18 369 247 59 0 chr12 14316800 14316885 -129469570 + MIR SINE MIR 99 188 -74 2230 124 0 0 chr12 14317114 14317421 -129469034 + AluSx SINE Alu 1 307 -5 186 203 116 58 chr12 14317474 14317543 -129468912 - L3 LINE CR1 -847 730 658 1064 211 59 30 chr12 14317682 14317839 -129468616 - AluJo SINE Alu -9 303 135 2338 89 0 13 chr12 14317839 14318152 -129468303 - AluSg SINE Alu -1 309 1 1064 211 59 30 chr12 14318152 14318231 -129468224 - AluJo SINE Alu -177 135 60 234 0 0 0 chr12 14318288 14318314 -129468141 + (TG)n Simple_repeat Simple_repeat 1 26 0 1319 201 28 92 chr12 14318330 14318554 -129467901 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 14318554 14318614 -129467841 + (GA)n Simple_repeat Simple_repeat 1 60 0 1319 201 28 92 chr12 14318614 14318781 -129467674 - MLT1A2 LTR MaLR -190 184 8 1297 88 10 62 chr12 14318916 14319132 -129467323 + AluSg/x SINE Alu 98 303 0 1936 114 0 94 chr12 14319142 14319484 -129466971 + AluJo SINE Alu 1 310 -2 365 318 85 39 chr12 14319553 14319682 -129466773 + MIR SINE MIR 5 140 -68 336 269 130 19 chr12 14319809 14319917 -129466538 - MIR SINE MIR -110 152 33 1463 143 64 57 chr12 14320607 14320727 -129465728 + AluJb SINE Alu 1 119 -193 2317 100 3 0 chr12 14320727 14321016 -129465439 + AluSp SINE Alu 1 290 -23 1463 143 64 57 chr12 14321016 14321175 -129465280 + AluJb SINE Alu 119 282 -30 2537 71 0 0 chr12 14321727 14322037 -129464418 + AluY SINE Alu 1 310 -1 2234 105 26 0 chr12 14322549 14322853 -129463602 + AluSx SINE Alu 1 312 0 1686 110 42 4 chr12 14323194 14323431 -129463024 + AluSx SINE Alu 51 296 -16 225 296 68 11 chr12 14323607 14323695 -129462760 - MIR SINE MIR -46 216 124 1076 201 108 24 chr12 14324489 14324777 -129461678 - MLT1C LTR MaLR -17 450 139 224 304 79 95 chr12 14324901 14324932 -129461523 + L2 LINE L2 2851 2881 -391 1632 170 49 10 chr12 14324932 14325220 -129461235 - AluJo SINE Alu -11 301 3 224 304 79 95 chr12 14325220 14325441 -129461014 + L2 LINE L2 2881 3099 -173 2494 70 0 16 chr12 14325486 14325802 -129460653 - AluY SINE Alu 0 311 1 2315 112 0 7 chr12 14325857 14326161 -129460294 - AluSq SINE Alu -11 302 1 195 283 50 0 chr12 14327021 14327081 -129459374 - MIR3 SINE MIR -139 69 7 535 204 277 0 chr12 14327284 14327421 -129459034 + MER96 DNA MER1_type 1 175 0 926 142 14 0 chr12 14327528 14327676 -129458779 + FAM SINE Alu 1 47 -2 1179 154 34 44 chr12 14328020 14328313 -129458142 + MER33 DNA MER1_type 4 293 -31 1343 184 139 4 chr12 14328313 14328579 -129457876 + AluJo SINE Alu 1 302 0 811 212 24 18 chr12 14328584 14328749 -129457706 + FRAM SINE Alu 1 166 0 225 315 55 0 chr12 14328809 14328882 -129457573 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 14330111 14330172 -129456283 + CT-rich Low_complexity Low_complexity 1 62 0 2389 84 3 0 chr12 14331023 14331320 -129455135 - AluSp SINE Alu -15 298 1 180 238 167 12 chr12 14331762 14331846 -129454609 + MIR SINE MIR 37 133 -75 310 247 143 45 chr12 14332127 14332281 -129454174 - L1 LINE L1 -3279 2867 2699 513 219 138 109 chr12 14332328 14332388 -129454067 + MER58A DNA MER1_type 9 66 -2354 2126 79 11 29 chr12 14332388 14332704 -129453751 - AluSq SINE Alu 0 322 12 513 219 138 109 chr12 14332704 14332852 -129453603 + MER58A DNA MER1_type 66 224 0 536 251 12 176 chr12 14332948 14333065 -129453390 - L1 LINE L1 -3535 2611 2477 1864 182 0 0 chr12 14333065 14333362 -129453093 - AluJb SINE Alu -15 297 1 536 251 12 176 chr12 14333362 14333426 -129453029 - L1 LINE L1 -3669 2477 2404 2675 52 0 0 chr12 14333426 14333731 -129452724 - AluY SINE Alu -6 305 1 536 251 12 176 chr12 14333731 14334038 -129452417 - L1 LINE L1 -3742 2404 2202 186 320 120 20 chr12 14334162 14334262 -129452193 - L2 LINE L2 -865 2449 2340 2451 63 3 50 chr12 14334350 14334669 -129451786 + AluY SINE Alu 1 304 -7 1959 173 0 3 chr12 14335600 14335901 -129450554 + AluSx SINE Alu 3 302 -10 2107 132 0 3 chr12 14336260 14336563 -129449892 - AluSx SINE Alu -10 302 1 319 250 74 9 chr12 14336638 14336746 -129449709 + L2 LINE L2 2175 2289 -1025 555 240 147 5 chr12 14336750 14336904 -129449551 + MIR SINE MIR 17 217 -45 2009 136 16 13 chr12 14336904 14337212 -129449243 + AluJo SINE Alu 1 309 -3 555 240 147 5 chr12 14337212 14337245 -129449210 + MIR SINE MIR 217 244 -18 225 357 159 0 chr12 14337274 14337431 -129449024 + L2 LINE L2 2298 2479 -835 22 0 0 0 chr12 14337528 14337550 -129448905 + AT_rich Low_complexity Low_complexity 1 22 0 1775 149 6 43 chr12 14337669 14337992 -129448463 - AluJo SINE Alu -1 311 1 305 269 69 91 chr12 14338158 14338333 -129448122 + MIR SINE MIR 73 243 -19 314 266 129 48 chr12 14338992 14339116 -129447339 - MIR3 SINE MIR -16 192 59 279 314 0 0 chr12 14339172 14339242 -129447213 + polypyrimidine Low_complexity Low_complexity 5 74 0 2458 69 26 3 chr12 14339269 14339575 -129446880 + AluSp SINE Alu 1 313 0 300 296 126 37 chr12 14340196 14340331 -129446124 - L2 LINE L2 -2 3270 3124 189 0 0 0 chr12 14340416 14340437 -129446018 + (A)n Simple_repeat Simple_repeat 1 21 0 626 221 100 48 chr12 14341011 14341134 -129445321 + L1MC5 LINE L1 7586 7701 -260 1726 168 3 30 chr12 14341134 14341438 -129445017 + AluJo SINE Alu 1 296 -16 2418 94 3 0 chr12 14341439 14341748 -129444707 + AluSp SINE Alu 1 310 -3 626 221 100 48 chr12 14341748 14341912 -129444543 + L1MC5 LINE L1 7700 7890 -71 1715 177 0 35 chr12 14341923 14342240 -129444215 - AluJo SINE Alu -6 306 1 365 256 132 25 chr12 14343152 14343273 -129443182 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 14343383 14343459 -129442996 + (TA)n Simple_repeat Simple_repeat 1 75 0 2326 91 17 0 chr12 14343538 14343834 -129442621 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 14344632 14344687 -129441768 + GA-rich Low_complexity Low_complexity 2 58 0 923 234 40 5 chr12 14344728 14344929 -129441526 + MIR SINE MIR 9 216 -46 1712 123 56 15 chr12 14344941 14345209 -129441246 + AluJb SINE Alu 1 279 -33 2263 83 16 22 chr12 14345426 14345738 -129440717 + AluSp SINE Alu 1 310 -3 1774 84 0 17 chr12 14345847 14346084 -129440371 + AluY SINE Alu 79 311 0 1760 177 18 0 chr12 14346303 14346580 -129439875 - AluJo SINE Alu -30 282 1 279 358 93 0 chr12 14347875 14348026 -129438429 - MIR3 SINE MIR -7 201 37 927 132 0 22 chr12 14348470 14348606 -129437849 + FLAM_C SINE Alu 1 133 0 2320 104 0 7 chr12 14349526 14349824 -129436631 - AluSg SINE Alu -14 296 1 2564 72 0 0 chr12 14350136 14350441 -129436014 - AluY SINE Alu -6 305 1 255 253 315 14 chr12 14350533 14350679 -129435776 - L2 LINE L2 0 3313 3124 922 201 0 0 chr12 14351475 14351639 -129434816 - AluJo SINE Alu -2 300 137 793 103 0 0 chr12 14353169 14353285 -129433170 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 2126 122 0 14 chr12 14353285 14353573 -129432882 - AluSx SINE Alu -1 399 1 1309 128 21 0 chr12 14353671 14353858 -129432597 - AluJo SINE Alu -9 303 113 720 117 83 17 chr12 14354028 14354148 -129432307 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 14354261 14354295 -129432160 + (TCC)n Simple_repeat Simple_repeat 3 36 0 955 86 0 149 chr12 14354295 14354469 -129431986 - AluSg SINE Alu -162 148 1 438 69 0 0 chr12 14355866 14355924 -129430531 + (TG)n Simple_repeat Simple_repeat 1 58 0 207 293 0 40 chr12 14356217 14356292 -129430163 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 14356719 14356747 -129429708 + AT_rich Low_complexity Low_complexity 1 28 0 1705 151 34 40 chr12 14356751 14357049 -129429406 - AluJb SINE Alu -16 296 1 1908 150 3 19 chr12 14357144 14357451 -129429004 - AluJo SINE Alu -6 306 5 2415 84 3 7 chr12 14358077 14358387 -129428068 - AluSp SINE Alu -4 309 1 984 319 158 10 chr12 14358390 14359068 -129427387 + L3 LINE CR1 466 1243 -334 538 265 11 95 chr12 14359075 14359127 -129427328 - MIR SINE MIR -4 258 203 2362 74 3 0 chr12 14359127 14359446 -129427009 - AluSq SINE Alu 0 320 1 538 265 11 95 chr12 14359446 14359504 -129426951 - MIR SINE MIR -59 203 142 2504 54 3 3 chr12 14359504 14359798 -129426657 - AluSp SINE Alu -19 294 1 538 265 11 95 chr12 14359798 14359949 -129426506 - MIR SINE MIR -120 142 17 318 67 0 0 chr12 14360788 14360833 -129425622 + (A)n Simple_repeat Simple_repeat 1 45 0 2314 99 0 16 chr12 14361221 14361533 -129424922 + AluSg SINE Alu 1 307 -3 496 155 12 0 chr12 14361984 14362052 -129424403 + CT-rich Low_complexity Low_complexity 4 75 -13 2282 97 7 0 chr12 14362052 14362360 -129424095 - AluY SINE Alu -1 310 1 496 155 12 0 chr12 14362360 14362375 -129424080 + CT-rich Low_complexity Low_complexity 75 88 0 1167 83 0 17 chr12 14362375 14362462 -129423993 + (TTCC)n Simple_repeat Simple_repeat 1 263 0 1167 83 0 17 chr12 14362462 14362643 -129423812 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1029 181 9 62 chr12 14362729 14362939 -129423516 - AluJo SINE Alu -113 199 1 717 172 0 0 chr12 14363331 14363453 -129423002 - FLAM_A SINE Alu -1 141 20 2010 93 43 23 chr12 14363475 14363775 -129422680 - AluSg SINE Alu -4 306 1 351 241 89 9 chr12 14363843 14363955 -129422500 + L2 LINE L2 3158 3278 -35 2065 125 26 10 chr12 14364468 14364771 -129421684 - AluSq SINE Alu -3 310 3 399 284 49 19 chr12 14365221 14365383 -129421072 - MER5A DNA MER1_type 0 189 23 2341 137 20 29 chr12 14365820 14366229 -129420226 + MER50 LTR ERV1 1 405 -329 265 74 19 74 chr12 14366253 14366307 -129420148 + MER50 LTR ERV1 355 405 -329 1730 115 18 25 chr12 14366331 14366610 -129419845 + MER50 LTR ERV1 355 631 -103 316 123 41 27 chr12 14366613 14366686 -129419769 + MER96B DNA MER1_type? 103 176 -241 267 152 0 0 chr12 14366828 14366874 -129419581 + (TA)n Simple_repeat Simple_repeat 2 47 0 315 311 0 0 chr12 14366878 14366968 -129419487 + L1MC4 LINE L1 6614 6703 -1339 309 279 35 0 chr12 14366945 14367031 -129419424 - L1MC4 LINE L1 -1340 6702 6614 * 472 149 21 0 chr12 14367034 14367128 -129419327 + (TA)n Simple_repeat Simple_repeat 1 96 0 225 200 21 53 chr12 14367128 14367223 -129419232 + L1MC4 LINE L1 6612 6703 -1339 267 130 0 0 chr12 14367225 14367271 -129419184 - L1MC4 LINE L1 -1339 6703 6658 858 225 0 0 chr12 14367327 14367487 -129418968 - AluJ SINE Alu -22 290 131 1881 154 3 3 chr12 14367507 14367792 -129418663 - AluJo SINE Alu -27 285 1 847 130 23 8 chr12 14367813 14367944 -129418511 - AluJ SINE Alu -169 133 1 288 0 0 0 chr12 14367998 14368030 -129418425 + (TA)n Simple_repeat Simple_repeat 1 32 0 2164 128 0 7 chr12 14368031 14368335 -129418120 - AluSx SINE Alu -10 302 1 242 211 0 19 chr12 14368434 14368486 -129417969 + MER96B DNA MER1_type? 193 243 -174 287 318 54 16 chr12 14368733 14368862 -129417593 + MER91A DNA MER1_type 28 161 -35 382 286 0 9 chr12 14369066 14369171 -129417284 - MER5C DNA MER1_type -212 112 9 852 288 125 14 chr12 14369448 14369816 -129416639 - MLT1I LTR MaLR 0 409 1 23 0 0 0 chr12 14370118 14370141 -129416314 + AT_rich Low_complexity Low_complexity 1 23 0 315 85 0 0 chr12 14370141 14370188 -129416267 + (TG)n Simple_repeat Simple_repeat 2 48 0 2063 101 36 26 chr12 14370462 14370770 -129415685 - AluSq SINE Alu -2 311 1 2255 113 0 3 chr12 14370872 14371172 -129415283 - AluSg SINE Alu -11 299 1 1730 158 28 14 chr12 14371401 14371686 -129414769 + AluJo SINE Alu 1 289 -23 2403 63 3 0 chr12 14372014 14372301 -129414154 + AluY SINE Alu 15 302 -9 3853 156 21 8 chr12 14372443 14373105 -129413350 - LTR51 LTR ERV1 0 671 1 239 268 205 9 chr12 14373147 14373259 -129413196 + MARNA DNA Mariner 400 533 -53 2109 130 58 14 chr12 14373277 14373639 -129412816 - MER83B LTR ERV1 0 378 1 258 158 0 0 chr12 14374260 14374298 -129412157 - tRNA-Ile-ATT tRNA tRNA -38 39 2 23 0 0 0 chr12 14374317 14374340 -129412115 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 14374429 14374453 -129412002 + AT_rich Low_complexity Low_complexity 1 24 0 914 127 0 0 chr12 14374511 14374629 -129411826 + AluJb SINE Alu 1 118 -194 2232 113 3 7 chr12 14374629 14374938 -129411517 - AluSx SINE Alu -4 308 1 751 163 57 0 chr12 14375043 14375184 -129411271 - FRAM SINE Alu 0 176 28 1546 136 147 0 chr12 14375314 14375565 -129410890 + AluJo SINE Alu 3 290 -12 31 0 0 0 chr12 14375573 14375604 -129410851 + AT_rich Low_complexity Low_complexity 1 31 0 2423 64 0 0 chr12 14376046 14376351 -129410104 + AluSc SINE Alu 1 305 0 2256 95 0 49 chr12 14376945 14377270 -129409185 + AluSx SINE Alu 1 309 -3 325 295 0 19 chr12 14377281 14377386 -129409069 + MIR3 SINE MIR 14 116 -92 217 250 0 0 chr12 14377495 14377543 -129408912 + L2 LINE L2 3214 3261 -11 317 309 145 0 chr12 14377730 14377882 -129408573 + MIR3 SINE MIR 8 181 -27 4035 128 45 25 chr12 14378338 14379047 -129407408 + L1MB2 LINE L1 5448 6170 -1 2093 137 3 0 chr12 14379571 14379864 -129406591 - AluSx SINE Alu -18 294 1 2257 87 0 0 chr12 14381106 14381381 -129405074 + AluSx SINE Alu 1 275 -37 531 176 44 0 chr12 14381654 14381745 -129404710 - AluJ/FLAM SINE Alu -212 100 6 268 313 15 0 chr12 14381834 14381901 -129404554 + L2 LINE L2 3123 3190 -82 401 253 94 74 chr12 14381990 14382192 -129404263 + MIR SINE MIR 17 222 -40 21 0 0 0 chr12 14382278 14382299 -129404156 + AT_rich Low_complexity Low_complexity 1 21 0 725 186 16 16 chr12 14382808 14382937 -129403518 - AluJo SINE Alu -63 249 121 1148 103 0 6 chr12 14383389 14383564 -129402891 + (TTCC)n Simple_repeat Simple_repeat 1 174 0 352 106 45 0 chr12 14383564 14383630 -129402825 + CT-rich Low_complexity Low_complexity 3 71 0 202 42 0 0 chr12 14383631 14383655 -129402800 + (TC)n Simple_repeat Simple_repeat 1 24 0 1973 135 23 3 chr12 14383655 14383958 -129402497 - AluSq SINE Alu -4 309 1 310 310 150 9 chr12 14384720 14384933 -129401522 - L3b LINE CR1 -127 1456 1214 1078 121 0 11 chr12 14384946 14385128 -129401327 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2072 121 0 0 chr12 14385128 14385408 -129401047 - AluSx SINE Alu -32 280 1 236 286 33 0 chr12 14385661 14385752 -129400703 - L3b LINE CR1 -381 1202 1109 374 98 0 16 chr12 14386154 14386215 -129400240 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1877 138 27 14 chr12 14386215 14386511 -129399944 - AluJb SINE Alu -12 300 1 395 74 0 0 chr12 14389124 14389178 -129397277 - MADE1 DNA Mariner 0 80 27 2272 112 0 0 chr12 14389178 14389473 -129396982 + AluSx SINE Alu 1 295 -17 2206 115 0 26 chr12 14389476 14389788 -129396667 + AluSx SINE Alu 1 304 -8 257 139 0 0 chr12 14389800 14389843 -129396612 - MADE1 DNA Mariner -37 43 1 2264 96 34 3 chr12 14391214 14391507 -129394948 - AluSg SINE Alu -8 302 1 2339 96 0 3 chr12 14391826 14392128 -129394327 - AluSx SINE Alu -11 301 1 223 224 69 0 chr12 14393656 14393714 -129392741 - L3 LINE CR1 -7 1570 1509 1318 275 9 15 chr12 14394087 14394418 -129392037 + MER45C DNA AcHobo 1 329 -624 1072 82 11 22 chr12 14394511 14394549 -129391906 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 1072 82 11 22 chr12 14394549 14394731 -129391724 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 895 112 12 18 chr12 14394775 14394944 -129391511 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 978 86 29 11 chr12 14394945 14395009 -129391446 + (TTTC)n Simple_repeat Simple_repeat 1 242 0 978 86 29 11 chr12 14395009 14395183 -129391272 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2197 134 0 0 chr12 14395206 14395504 -129390951 - AluSx SINE Alu -14 298 1 2039 130 3 0 chr12 14396134 14396418 -129390037 + AluJb SINE Alu 1 285 -27 22 35 0 0 chr12 14396572 14396601 -129389854 + AT_rich Low_complexity Low_complexity 1 29 0 2094 112 3 17 chr12 14397094 14397406 -129389049 - AluSq SINE Alu 0 308 1 4103 102 2 3 chr12 14397491 14398072 -129388383 - L1PA14 LINE L1 -4 6157 5578 703 130 0 9 chr12 14398474 14398589 -129387866 - FRAM SINE Alu -1 175 62 29 0 0 0 chr12 14398626 14398655 -129387800 + AT_rich Low_complexity Low_complexity 1 29 0 1362 124 0 0 chr12 14398655 14398833 -129387622 + AluSg SINE Alu 1 178 -132 474 33 16 0 chr12 14398833 14398894 -129387561 + AluSc SINE Alu 228 289 -20 2054 138 7 16 chr12 14398899 14399204 -129387251 + AluSx SINE Alu 1 302 -10 663 198 33 0 chr12 14399204 14399325 -129387130 - AluJo/FLAM SINE Alu -187 125 1 1246 246 40 57 chr12 14399383 14399737 -129386718 + MLT1H1 LTR MaLR 12 359 -196 443 176 6 139 chr12 14399761 14399926 -129386529 - LTR37A LTR ERV1 -231 195 53 1726 157 50 13 chr12 14400244 14400544 -129385911 - AluJb SINE Alu -1 311 1 313 173 53 90 chr12 14400921 14401054 -129385401 - MER112 DNA MER1_type -123 137 10 2380 89 0 13 chr12 14401054 14401358 -129385097 + AluSp SINE Alu 1 300 -13 2267 125 0 0 chr12 14401641 14401953 -129384502 - AluSx SINE Alu 0 312 1 225 301 24 0 chr12 14402111 14402194 -129384261 - L2 LINE L2 -1 3312 3228 784 333 85 30 chr12 14402608 14403369 -129383086 - L2 LINE L2 0 3313 2518 1438 264 92 52 chr12 14403419 14404338 -129382117 + L2 LINE L2 2372 3312 -1 344 275 52 52 chr12 14404746 14404939 -129381516 - L2 LINE L2 -850 2464 2272 193 382 57 8 chr12 14405103 14405226 -129381229 - L2 LINE L2 0 3272 3144 1794 127 3 37 chr12 14405411 14405710 -129380745 + AluSx SINE Alu 1 289 -23 616 263 42 51 chr12 14407260 14407477 -129378978 + MIR SINE MIR 46 260 -2 2298 88 0 7 chr12 14407835 14408140 -129378315 + AluSx SINE Alu 1 303 -9 1793 149 7 0 chr12 14408794 14409109 -129377346 - AluSx SINE Alu 0 317 1 2239 103 6 3 chr12 14409681 14409992 -129376463 + AluSx SINE Alu 1 312 0 462 236 17 120 chr12 14410191 14410432 -129376023 + MLT1L LTR MaLR 98 392 -198 275 202 96 75 chr12 14410451 14410545 -129375910 + MLT1L LTR MaLR 386 586 -29 336 333 0 0 chr12 14410574 14410661 -129375794 - L2 LINE L2 -49 3223 3137 189 0 0 0 chr12 14410661 14410682 -129375773 + (A)n Simple_repeat Simple_repeat 1 21 0 716 297 175 26 chr12 14410807 14411370 -129375085 - L2 LINE L2 -167 3146 2495 375 357 79 4 chr12 14411403 14411669 -129374786 + L2 LINE L2 2033 2318 -996 1340 251 42 71 chr12 14411698 14412193 -129374262 - MER34 LTR ERV1 -61 481 1 536 319 130 17 chr12 14412196 14412497 -129373958 + L2 LINE L2 2470 2804 -510 347 296 78 0 chr12 14412556 14412671 -129373784 + MIR SINE MIR 118 241 -21 330 271 71 26 chr12 14414271 14414426 -129372029 + MIR SINE MIR 90 251 -11 276 82 61 0 chr12 14414702 14414751 -129371704 + Alu SINE Alu 251 302 0 281 284 124 41 chr12 14415390 14415559 -129370896 + L3b LINE CR1 1230 1412 -171 617 322 35 26 chr12 14415768 14415995 -129370460 + MIR SINE MIR 34 262 0 1012 195 6 0 chr12 14416082 14416256 -129370199 + FAM SINE Alu 1 175 0 624 247 49 95 chr12 14416302 14416606 -129369849 + L2 LINE L2 3022 3311 -2 285 277 123 112 chr12 14416730 14416853 -129369602 - L2 LINE L2 -455 2859 2739 2273 92 26 0 chr12 14416853 14417156 -129369299 - AluSx SINE Alu -1 311 1 285 277 123 112 chr12 14417156 14417856 -129368599 - L2 LINE L2 -575 2739 2027 243 277 36 84 chr12 14418144 14418310 -129368145 + MIR SINE MIR 60 217 -45 243 324 185 35 chr12 14419577 14420064 -129366391 - L2 LINE L2 -553 2761 2202 255 252 47 84 chr12 14420311 14420418 -129366037 + L2 LINE L2 3211 3313 0 198 348 59 22 chr12 14420480 14420615 -129365840 - L2 LINE L2 -1044 2270 2131 821 155 0 0 chr12 14420640 14420769 -129365686 - FLAM_C SINE Alu -7 136 8 562 280 57 21 chr12 14420812 14421005 -129365450 - L2 LINE L2 -86 3227 3028 435 296 0 0 chr12 14421331 14421429 -129365026 - MIR SINE MIR -118 144 47 652 251 64 15 chr12 14421517 14421720 -129364735 - MIR SINE MIR -3 259 47 2330 211 31 81 chr12 14422450 14423194 -129363261 + L1MC5 LINE L1 6712 7418 -543 991 179 0 0 chr12 14423295 14423468 -129362987 + FRAM SINE Alu 1 169 -7 701 230 77 55 chr12 14423478 14423523 -129362932 + L1MC5 LINE L1 7549 7592 -369 2007 103 14 7 chr12 14423523 14423814 -129362641 + AluSg SINE Alu 1 293 -17 701 230 77 55 chr12 14423814 14424147 -129362308 + L1MC5 LINE L1 7592 7935 -26 320 262 66 25 chr12 14424407 14424529 -129361926 - MIR SINE MIR -83 179 53 549 167 149 0 chr12 14424608 14424722 -129361733 - MER96 DNA MER1_type? -33 142 12 321 201 77 0 chr12 14426160 14426232 -129360223 + L1ME LINE L1 5527 5595 -526 408 40 0 0 chr12 14426238 14426288 -129360167 + (TC)n Simple_repeat Simple_repeat 1 50 0 1816 136 10 27 chr12 14426288 14426589 -129359866 - AluSx SINE Alu -16 296 1 460 90 0 0 chr12 14427081 14427148 -129359307 - MER41B LTR ERV1 -93 542 476 694 168 87 34 chr12 14428274 14428482 -129357973 + HAL1 LINE L1 974 1192 -1315 1236 136 5 5 chr12 14428570 14428761 -129357694 + MER2 DNA MER2_type 7 197 -148 381 22 0 0 chr12 14428770 14428816 -129357639 + (CA)n Simple_repeat Simple_repeat 1 46 0 1423 156 32 64 chr12 14428820 14429121 -129357334 - AluJo SINE Alu -8 304 12 3311 166 15 75 chr12 14429121 14429856 -129356599 + LTR8 LTR ERV1 1 691 0 1423 156 32 64 chr12 14429856 14429868 -129356587 - AluJo SINE Alu -300 12 1 401 210 12 12 chr12 14429905 14429986 -129356469 + MER2 DNA MER2_type 265 345 0 227 299 87 39 chr12 14430305 14430432 -129356023 + MER112 DNA MER1_type 23 155 -105 1968 138 0 0 chr12 14430861 14431157 -129355298 - AluSx SINE Alu -16 296 1 403 368 66 0 chr12 14431487 14431653 -129354802 - MIR3 SINE MIR -8 200 24 264 194 32 0 chr12 14431713 14431775 -129354680 + CT-rich Low_complexity Low_complexity 2 65 0 345 140 0 0 chr12 14431778 14431835 -129354620 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 1267 172 18 72 chr12 14431835 14432114 -129354341 - AluJb SINE Alu -14 298 35 238 143 0 0 chr12 14432122 14432140 -129354315 - Alu SINE Alu 0 133 116 294 29 0 0 chr12 14432140 14432175 -129354280 + (TC)n Simple_repeat Simple_repeat 1 35 0 238 143 0 0 chr12 14432175 14432205 -129354250 - Alu SINE Alu -16 117 85 284 296 45 45 chr12 14432389 14432477 -129353978 - L2 LINE L2 -1 3312 3225 204 356 23 0 chr12 14433010 14433097 -129353358 - L3 LINE CR1 -680 897 809 273 263 25 12 chr12 14433335 14433415 -129353040 - MIR3 SINE MIR -6 202 122 * 361 324 29 0 chr12 14433413 14433549 -129352906 - L2 LINE L2 -1010 2304 2165 648 303 138 31 chr12 14433644 14434063 -129352392 + L2 LINE L2 2837 3300 -13 770 310 39 0 chr12 14434725 14434954 -129351501 - MIR SINE MIR -1 261 24 261 215 15 46 chr12 14435358 14435423 -129351032 - MIR SINE MIR -109 153 91 252 293 114 42 chr12 14435455 14435622 -129350833 - MIR SINE MIR -26 236 58 191 295 31 54 chr12 14435668 14435797 -129350658 - MIR SINE MIR -42 220 95 833 260 151 43 chr12 14435912 14436377 -129350078 - LTR33A LTR ERVL 0 523 9 725 236 109 26 chr12 14436744 14436973 -129349482 + L2 LINE L2 3058 3305 -8 559 231 95 107 chr12 14436974 14437217 -129349238 + MER102a DNA MER1_type 91 330 0 2422 164 87 8 chr12 14437797 14438278 -129348177 - MER44D DNA MER2_type 0 605 32 278 211 68 27 chr12 14438807 14438954 -129347501 + (CGG)n Simple_repeat Simple_repeat 2 154 0 273 172 31 115 chr12 14438889 14439081 -129347374 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 * 214 305 92 7 chr12 14439510 14439651 -129346804 + L2 LINE L2 2593 2745 -569 2054 124 0 10 chr12 14442556 14442863 -129343592 - AluSq SINE Alu -9 304 1 339 278 52 19 chr12 14443454 14443586 -129342869 - MIR SINE MIR -70 138 5 1667 163 42 0 chr12 14443786 14444074 -129342381 - AluJb SINE Alu -12 300 1 1392 176 31 10 chr12 14444076 14444365 -129342090 - AluJo SINE Alu -17 295 1 721 200 47 24 chr12 14444670 14444840 -129341615 - MER104 DNA Tc2 -1 179 6 338 229 46 120 chr12 14445131 14445209 -129341246 + MIR SINE MIR 50 109 -153 914 118 0 22 chr12 14445209 14445345 -129341110 - FLAM_C SINE Alu 0 133 1 338 229 46 120 chr12 14445345 14445441 -129341014 + MIR SINE MIR 109 211 -51 1924 87 45 74 chr12 14445576 14445887 -129340568 - AluSx SINE Alu -10 302 1 1936 106 48 7 chr12 14445982 14446275 -129340180 + MER4D LTR ERV1 1 305 -598 2060 128 0 10 chr12 14446278 14446591 -129339864 + AluSx SINE Alu 2 311 -1 219 325 20 66 chr12 14446598 14446749 -129339706 - L2 LINE L2 -1778 1536 1393 2234 91 3 3 chr12 14447117 14447425 -129339030 - AluSg SINE Alu -2 308 1 874 186 55 42 chr12 14447459 14447766 -129338689 - L1MA8 LINE L1 0 6291 5981 258 32 0 0 chr12 14448260 14448291 -129338164 + (T)n Simple_repeat Simple_repeat 1 31 0 455 295 14 76 chr12 14449130 14449281 -129337174 + MIR SINE MIR 17 153 -109 2346 58 3 3 chr12 14449281 14449575 -129336880 + AluSp SINE Alu 1 294 -19 455 295 14 76 chr12 14449575 14449633 -129336822 + MIR SINE MIR 153 213 -49 2125 106 0 16 chr12 14449634 14449945 -129336510 + AluSg SINE Alu 2 307 -3 2169 97 7 0 chr12 14450395 14450772 -129335683 - AluY SINE Alu 0 379 1 1113 90 11 11 chr12 14450895 14451073 -129335382 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 988 171 9 62 chr12 14451097 14451307 -129335148 - AluJo SINE Alu -113 199 1 720 172 0 0 chr12 14451699 14451821 -129334634 - FLAM_A SINE Alu -1 141 20 1894 107 43 17 chr12 14451843 14452143 -129334312 - AluSg SINE Alu -2 308 1 397 241 89 9 chr12 14452211 14452323 -129334132 + L2 LINE L2 3158 3278 -35 1943 125 26 10 chr12 14452836 14453139 -129333316 - AluSq SINE Alu -3 310 3 460 284 49 19 chr12 14453589 14453751 -129332704 - MER5A DNA MER1_type 0 189 23 2374 137 20 29 chr12 14454188 14454597 -129331858 + MER50 LTR ERV1 1 405 -329 273 74 19 74 chr12 14454621 14454675 -129331780 + MER50 LTR ERV1 355 405 -329 1740 115 18 25 chr12 14454699 14454978 -129331477 + MER50 LTR ERV1 355 631 -103 316 125 41 27 chr12 14454975 14455054 -129331401 + MER96B DNA MER1_type? 97 176 -241 * 378 270 37 0 chr12 14455198 14455361 -129331094 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 345 250 11 33 chr12 14455364 14455456 -129330999 - L1MC4 LINE L1 -1339 6703 6614 * 383 258 11 21 chr12 14455383 14455476 -129330979 + L1MC4 LINE L1 6612 6703 -1339 229 196 0 0 chr12 14455484 14455530 -129330925 - L1MC4 LINE L1 -1339 6703 6658 858 215 5 42 chr12 14455586 14455800 -129330655 - AluJb SINE Alu -22 290 131 1867 158 3 3 chr12 14455766 14456051 -129330404 - AluJo SINE Alu -27 285 1 1909 149 7 0 chr12 14456623 14456938 -129329517 + AluSx SINE Alu 1 317 0 2422 89 0 7 chr12 14457592 14457896 -129328559 - AluSx SINE Alu -10 302 1 519 258 46 55 chr12 14458254 14458471 -129327984 - MIR SINE MIR -2 260 46 1915 127 3 37 chr12 14460021 14460320 -129326135 - AluSx SINE Alu -23 289 1 266 280 52 52 chr12 14460792 14460985 -129325470 + L2 LINE L2 2272 2464 -850 201 152 0 0 chr12 14461566 14461599 -129324856 + (CATCC)n Simple_repeat Simple_repeat 3 35 0 760 309 148 25 chr12 14461599 14462032 -129324423 - L2 LINE L2 -3 3310 2825 1210 238 55 46 chr12 14462062 14462478 -129323977 - L1MC4 LINE L1 -143 7899 7480 962 206 78 0 chr12 14462478 14462696 -129323759 - MIR SINE MIR -12 250 16 846 271 156 19 chr12 14462687 14463097 -129323358 + L2 LINE L2 2844 3309 -4 * 28 29 0 0 chr12 14463111 14463146 -129323309 + AT_rich Low_complexity Low_complexity 1 35 0 4587 138 30 85 chr12 14463399 14463613 -129322842 + L1MA6 LINE L1 5108 5332 -968 2116 125 10 13 chr12 14463613 14463926 -129322529 + AluSx SINE Alu 1 312 0 2308 101 3 0 chr12 14463936 14464233 -129322222 + AluSx SINE Alu 1 298 -14 4587 138 30 85 chr12 14464233 14465260 -129321195 + L1MA6 LINE L1 5341 6300 0 1299 143 17 21 chr12 14465295 14465533 -129320922 + AluSc SINE Alu 2 238 -71 2254 114 0 0 chr12 14465667 14465973 -129320482 - AluY SINE Alu -5 306 1 1085 163 0 11 chr12 14466153 14466331 -129320124 - AluJb SINE Alu 0 312 137 1867 134 39 23 chr12 14467080 14467386 -129319069 + AluSx SINE Alu 1 311 -1 381 216 77 91 chr12 14467386 14467594 -129318861 - L2 LINE L2 -2 3311 3107 1344 33 0 0 chr12 14468451 14468604 -129317851 - L1P LINE L1 -1165 4981 4829 213 39 0 0 chr12 14468604 14468630 -129317825 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2243 102 0 0 chr12 14468632 14468935 -129317520 - AluY SINE Alu -8 303 1 506 144 0 21 chr12 14468950 14469047 -129317408 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 2594 54 0 0 chr12 14470128 14470425 -129316030 - AluY SINE Alu -14 297 1 303 290 0 0 chr12 14470639 14470732 -129315723 - L1M4 LINE L1 -3852 2294 2202 2446 62 3 50 chr12 14471044 14471364 -129315091 + AluY SINE Alu 1 305 -6 1925 173 0 3 chr12 14472294 14472595 -129313860 + AluSx SINE Alu 3 302 -10 2079 132 0 3 chr12 14472954 14473257 -129313198 - AluSx SINE Alu -10 302 1 267 250 74 9 chr12 14473332 14473440 -129313015 + L2 LINE L2 2175 2289 -1025 487 209 122 0 chr12 14473444 14473588 -129312867 + MIR SINE MIR 17 191 -61 1974 136 16 13 chr12 14473598 14473906 -129312549 + AluJo SINE Alu 1 309 -3 190 279 0 0 chr12 14474076 14474119 -129312336 + L2 LINE L2 2431 2473 -841 22 0 0 0 chr12 14474222 14474244 -129312211 + AT_rich Low_complexity Low_complexity 1 22 0 1735 149 6 43 chr12 14474363 14474686 -129311769 - AluJo SINE Alu -1 311 1 240 269 69 91 chr12 14474852 14475027 -129311428 + MIR SINE MIR 73 243 -19 267 273 73 55 chr12 14475686 14475796 -129310659 - MIR3 SINE MIR -16 192 81 279 314 0 0 chr12 14475866 14475936 -129310519 + polypyrimidine Low_complexity Low_complexity 5 74 0 2439 69 26 3 chr12 14475963 14476269 -129310186 + AluSp SINE Alu 1 313 0 242 276 147 26 chr12 14476909 14477025 -129309430 - L2 LINE L2 -19 3253 3124 189 0 0 0 chr12 14477110 14477131 -129309324 + (A)n Simple_repeat Simple_repeat 1 21 0 686 217 100 48 chr12 14477705 14477828 -129308627 + L1MC5 LINE L1 7586 7701 -260 1692 168 3 30 chr12 14477828 14478132 -129308323 + AluJo SINE Alu 1 296 -16 2392 94 3 0 chr12 14478133 14478442 -129308013 + AluSp SINE Alu 1 310 -3 686 217 100 48 chr12 14478442 14478606 -129307849 + L1MC5 LINE L1 7700 7890 -71 1667 164 0 47 chr12 14478617 14478934 -129307521 - AluJo SINE Alu -10 302 1 325 256 132 25 chr12 14479846 14479967 -129306488 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 14480077 14480153 -129306302 + (TA)n Simple_repeat Simple_repeat 2 76 0 2311 91 17 0 chr12 14480232 14480528 -129305927 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 14481326 14481381 -129305074 + GA-rich Low_complexity Low_complexity 2 58 0 837 234 40 5 chr12 14481422 14481623 -129304832 + MIR SINE MIR 9 216 -46 1696 123 56 15 chr12 14481635 14481903 -129304552 + AluJb SINE Alu 1 279 -33 2243 83 16 22 chr12 14482120 14482432 -129304023 + AluSp SINE Alu 1 310 -3 1752 84 0 17 chr12 14482541 14482778 -129303677 + AluY SINE Alu 79 311 0 1741 177 18 0 chr12 14482997 14483274 -129303181 - AluJo SINE Alu -30 282 1 220 358 93 0 chr12 14484569 14484720 -129301735 - MIR3 SINE MIR -7 201 37 908 132 0 22 chr12 14485164 14485300 -129301155 + FLAM_C SINE Alu 1 133 0 2301 104 0 7 chr12 14486220 14486518 -129299937 - AluSg SINE Alu -14 296 1 2550 72 0 0 chr12 14486830 14487135 -129299320 - AluY SINE Alu -6 305 1 184 210 194 0 chr12 14487227 14487289 -129299166 - L2 LINE L2 0 3272 3199 885 201 0 0 chr12 14488169 14488333 -129298122 - AluJo SINE Alu -2 300 137 2111 122 0 14 chr12 14489863 14490267 -129296188 - AluSx SINE Alu 0 400 1 1286 128 21 0 chr12 14490365 14490552 -129295903 - AluJo SINE Alu -9 303 113 720 117 83 17 chr12 14490722 14490842 -129295613 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 14490955 14490989 -129295466 + (TCC)n Simple_repeat Simple_repeat 3 36 0 955 86 0 149 chr12 14490989 14491163 -129295292 - AluSg SINE Alu -162 148 1 315 71 0 0 chr12 14492560 14492602 -129293853 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 293 0 40 chr12 14492895 14492970 -129293485 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 14493397 14493425 -129293030 + AT_rich Low_complexity Low_complexity 1 28 0 1685 147 33 43 chr12 14493429 14493728 -129292727 - AluJb SINE Alu -16 296 1 1914 150 3 16 chr12 14493823 14494129 -129292326 - AluJo SINE Alu -6 306 5 2415 84 3 7 chr12 14494754 14495064 -129291391 - AluSp SINE Alu -4 309 1 984 319 158 10 chr12 14495067 14495745 -129290710 + L3 LINE CR1 466 1243 -334 259 192 0 0 chr12 14495752 14495804 -129290651 - MIR SINE MIR -4 258 207 2207 106 3 0 chr12 14495804 14496127 -129290328 - AluSq SINE Alu 0 324 1 234 228 208 17 chr12 14496418 14496551 -129289904 + MER5A DNA MER1_type 1 141 -37 2134 123 10 3 chr12 14496678 14496979 -129289476 - AluSx SINE Alu -9 303 1 968 289 59 30 chr12 14496998 14497438 -129289017 - L1MC4a LINE L1 -1799 6289 5837 * 2044 245 66 0 chr12 14497435 14498039 -129288416 - L1MC4a LINE L1 -2591 3835 3192 23 0 0 0 chr12 14498268 14498291 -129288164 + AT_rich Low_complexity Low_complexity 1 23 0 2336 90 0 10 chr12 14498342 14498643 -129287812 - AluSx SINE Alu -14 298 1 2254 211 120 39 chr12 14498727 14499455 -129287000 - L1MCa LINE L1 -3215 3211 2375 1904 148 3 32 chr12 14499455 14499765 -129286690 - AluJb SINE Alu -11 301 1 2254 211 120 39 chr12 14499765 14500029 -129286426 - L1MCa LINE L1 -4051 2375 2134 355 306 91 19 chr12 14500190 14500399 -129286056 - L1M4 LINE L1 -3668 2478 2255 2118 153 79 29 chr12 14501021 14501465 -129284990 - MLT1C LTR MaLR -1 466 1 331 329 82 14 chr12 14501555 14501701 -129284754 - HAL1b LINE L1 -437 911 756 2319 112 0 0 chr12 14502053 14502358 -129284097 - AluSx SINE Alu -7 305 1 2323 229 66 22 chr12 14503031 14503577 -129282878 + MLT1G LTR MaLR 19 588 -2 756 310 49 4 chr12 14503659 14503904 -129282551 + MLT2F LTR ERVL 6 261 -402 2424 53 0 0 chr12 14503986 14504315 -129282140 + AluY SINE Alu 1 311 0 253 206 44 29 chr12 14504683 14504751 -129281704 + MLT2F LTR ERVL 275 343 -320 1723 320 55 14 chr12 14505076 14505820 -129280635 - HERV16 LTR ERVL -2625 2371 1658 372 406 0 0 chr12 14505818 14505978 -129280477 - HERV16 LTR ERVL -3464 1532 1373 * 2025 132 42 73 chr12 14506330 14506756 -129279699 - L1MA8 LINE L1 -91 6200 5788 551 305 79 32 chr12 14506779 14507094 -129279361 - LTR16C LTR ERVL -4 487 158 800 241 105 96 chr12 14507111 14507631 -129278824 - L1MC5 LINE L1 -817 6991 6477 2048 131 144 25 chr12 14507631 14507991 -129278464 - MER57A LTR ERV1 0 403 1 800 241 105 96 chr12 14507991 14508483 -129277972 - L1MC5 LINE L1 -1331 6477 5985 965 213 0 18 chr12 14508483 14508652 -129277803 - FRAM SINE Alu 0 166 1 800 241 105 96 chr12 14508652 14508860 -129277595 - L1MC5 LINE L1 -1823 5985 5780 859 254 24 10 chr12 14508914 14509119 -129277336 - L2 LINE L2 -879 2435 2228 237 226 0 0 chr12 14510321 14510374 -129276081 - L1ME4a LINE L1 -100 6021 5969 26 0 0 0 chr12 14510554 14510580 -129275875 + AT_rich Low_complexity Low_complexity 1 26 0 742 169 32 0 chr12 14510622 14510798 -129275657 + AluJb SINE Alu 156 335 0 22 35 0 0 chr12 14510815 14510844 -129275611 + AT_rich Low_complexity Low_complexity 1 29 0 1140 176 14 32 chr12 14511646 14511862 -129274593 - AluJo SINE Alu -15 297 86 252 344 199 4 chr12 14511925 14512187 -129274268 + L3 LINE CR1 1251 1563 -14 2574 262 81 72 chr12 14514708 14515656 -129270799 + L2 LINE L2 1927 2904 -409 2055 132 0 25 chr12 14515656 14515975 -129270480 + AluSq SINE Alu 1 311 -2 2574 262 81 72 chr12 14515975 14516387 -129270068 + L2 LINE L2 2904 3311 -2 1926 130 32 23 chr12 14516387 14516695 -129269760 - AluSx SINE Alu -1 311 1 1712 152 42 7 chr12 14516697 14516980 -129269475 - AluJo SINE Alu -11 301 9 284 287 218 10 chr12 14517473 14517574 -129268881 + L2 LINE L2 2628 2749 -565 357 310 140 50 chr12 14517635 14517667 -129268788 + L2 LINE L2 2875 2903 -410 2271 101 13 3 chr12 14517667 14517973 -129268482 - AluSx SINE Alu -3 309 1 357 310 140 50 chr12 14517973 14518304 -129268151 + L2 LINE L2 2903 3271 -42 2124 103 4 0 chr12 14518399 14518700 -129267755 - AluSq SINE Alu 0 302 1 1735 166 3 7 chr12 14518994 14519305 -129267150 + AluJb SINE Alu 1 310 0 556 292 65 0 chr12 14519998 14520183 -129266272 + MER117 DNA MER1_type 1 197 0 21 0 0 0 chr12 14520486 14520507 -129265948 + GC_rich Low_complexity Low_complexity 1 21 0 683 247 93 14 chr12 14521705 14522084 -129264371 + MLT1J2 LTR MaLR 1 441 -9 192 40 0 0 chr12 14523325 14523350 -129263105 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 823 224 0 7 chr12 14523350 14523497 -129262958 - FRAM SINE Alu -19 147 2 862 231 32 42 chr12 14524062 14524278 -129262177 - MIR SINE MIR -28 234 21 341 302 19 19 chr12 14524431 14524537 -129261918 + MIR3 SINE MIR 85 190 -18 518 329 91 0 chr12 14525243 14525462 -129260993 - MIR SINE MIR 0 262 24 265 256 98 0 chr12 14525504 14525586 -129260869 - MIR SINE MIR -78 184 95 308 277 64 109 chr12 14525820 14526242 -129260213 - L1M2 LINE L1 -5767 1082 680 328 275 47 47 chr12 14526283 14526432 -129260023 - MIR3 SINE MIR -59 149 1 183 80 0 0 chr12 14526565 14526590 -129259865 + (T)n Simple_repeat Simple_repeat 1 25 0 815 0 0 0 chr12 14527506 14527596 -129258859 + 5S rRNA rRNA 1 90 -31 2254 79 7 0 chr12 14527793 14528113 -129258342 - AluSp SINE Alu 0 322 1 310 202 180 10 chr12 14528157 14528258 -129258197 + MIR SINE MIR 12 144 -64 206 92 46 46 chr12 14528795 14528860 -129257595 + (TATAG)n Simple_repeat Simple_repeat 2 66 0 754 242 47 94 chr12 14529484 14529971 -129256484 - HAL1b LINE L1 -796 552 89 552 228 53 92 chr12 14530012 14530079 -129256376 + MIR SINE MIR 24 92 -170 2342 128 36 28 chr12 14530079 14530439 -129256016 - THE1B LTR MaLR 0 364 2 552 228 53 92 chr12 14530439 14530543 -129255912 + MIR SINE MIR 92 188 -74 2015 134 0 3 chr12 14530543 14530835 -129255620 - AluSx SINE Alu -21 291 1 552 228 53 92 chr12 14530835 14530868 -129255587 + MIR SINE MIR 188 221 -41 536 139 0 12 chr12 14531475 14531561 -129254894 + LTR41 LTR ERVL 3 87 -686 362 223 0 58 chr12 14531607 14531728 -129254727 + LTR41 LTR ERVL 655 768 -5 880 218 92 26 chr12 14531936 14532077 -129254378 + MIR SINE MIR 3 166 -96 189 0 0 0 chr12 14532077 14532098 -129254357 + (TAA)n Simple_repeat Simple_repeat 3 23 0 880 218 92 26 chr12 14532098 14532185 -129254270 + MIR SINE MIR 166 246 -16 865 299 117 27 chr12 14532745 14533156 -129253299 + L3 LINE CR1 789 1236 -341 567 325 66 4 chr12 14533201 14533444 -129253011 - MIR SINE MIR 0 262 5 184 322 206 38 chr12 14533452 14533719 -129252736 + L3 LINE CR1 1239 1550 -27 21 0 0 0 chr12 14533778 14533799 -129252656 + AT_rich Low_complexity Low_complexity 1 21 0 2259 151 52 0 chr12 14533801 14534185 -129252270 - L1MB2 LINE L1 -2 6169 5766 22 56 0 0 chr12 14534636 14534672 -129251783 + AT_rich Low_complexity Low_complexity 1 36 0 5080 162 63 47 chr12 14534721 14535775 -129250680 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr12 14537714 14537737 -129248718 + AT_rich Low_complexity Low_complexity 1 23 0 1200 246 11 71 chr12 14538275 14538336 -129248119 - L1ME3A LINE L1 -218 5952 5889 2073 130 0 3 chr12 14538336 14538636 -129247819 - AluSx SINE Alu -13 299 1 1200 246 11 71 chr12 14538636 14539026 -129247429 - L1ME3A LINE L1 -281 5889 5528 2585 197 101 30 chr12 14539068 14539734 -129246721 - L1MDa LINE L1 -5826 714 2 208 226 258 11 chr12 14540092 14540185 -129246270 - MIR3 SINE MIR -9 199 84 863 256 131 36 chr12 14540343 14540816 -129245639 + LTR33 LTR ERVL 4 521 0 876 264 40 12 chr12 14541344 14541594 -129244861 - MIR SINE MIR -4 258 2 533 321 47 11 chr12 14544691 14544881 -129241574 + MIR SINE MIR 28 224 -38 1798 314 187 8 chr12 14546450 14547407 -129239048 - L3 LINE CR1 -21 1556 429 1182 246 5 0 chr12 14547468 14547688 -129238767 + MER58A DNA MER1_type 3 223 -1 23 0 0 0 chr12 14549196 14549219 -129237236 + AT_rich Low_complexity Low_complexity 1 23 0 188 320 88 56 chr12 14550231 14550356 -129236099 - L2 LINE L2 -6 3307 3179 214 297 55 33 chr12 14550925 14551016 -129235439 - L2 LINE L2 -8 3305 3213 599 267 52 26 chr12 14551461 14551652 -129234803 + MIR SINE MIR 1 196 -66 351 0 0 0 chr12 14551672 14551711 -129234744 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 202 71 36 chr12 14552420 14552504 -129233951 + MIR3 SINE MIR 97 183 -25 205 282 73 97 chr12 14553537 14553661 -129232794 - L2 LINE L2 -12 3260 3140 230 352 57 0 chr12 14553802 14553890 -129232565 + MIR SINE MIR 45 137 -71 3214 90 26 2 chr12 14553890 14553949 -129232506 - HSMAR2 DNA Mariner -1 1301 1245 2278 113 0 0 chr12 14553949 14554250 -129232205 + AluSg SINE Alu 1 301 -9 3214 90 26 2 chr12 14554250 14554646 -129231809 - HSMAR2 DNA Mariner -57 1245 835 832 157 0 8 chr12 14554660 14554794 -129231661 - FLAM_C SINE Alu 0 133 1 5370 128 7 8 chr12 14554917 14555738 -129230717 - HSMAR2 DNA Mariner -481 821 2 2086 106 6 61 chr12 14556925 14557255 -129229200 - AluSx SINE Alu 0 312 1 376 252 107 19 chr12 14557915 14558018 -129228437 - L2 LINE L2 -3 3269 3158 270 209 116 0 chr12 14558119 14558205 -129228250 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 14558743 14558772 -129227683 + AT_rich Low_complexity Low_complexity 1 29 0 7861 18 0 0 chr12 14558772 14559918 -129226537 - L1PA3 LINE L1 -3 6152 5005 8333 29 0 0 chr12 14559918 14560880 -129225575 + L1PA3 LINE L1 4020 4981 -1165 479 310 30 35 chr12 14561689 14561886 -129224569 + MER20 DNA MER1_type 1 196 -23 2369 76 0 19 chr12 14563449 14563764 -129222691 - AluSq SINE Alu -4 309 1 4577 52 16 0 chr12 14565043 14565604 -129220851 - L1PA5 LINE L1 0 6154 5585 220 215 0 77 chr12 14565849 14565914 -129220541 - L2 LINE L2 -8 3264 3205 207 347 71 10 chr12 14566066 14566164 -129220291 + L2 LINE L2 3149 3252 -20 329 318 66 71 chr12 14571162 14571268 -129215187 - MIR3 SINE MIR -6 202 96 2220 95 7 0 chr12 14571268 14571564 -129214891 + AluSp SINE Alu 1 298 -15 329 318 66 71 chr12 14571564 14571655 -129214800 - MIR3 SINE MIR -112 96 6 3819 123 51 47 chr12 14572523 14572918 -129213537 + MER39B LTR ERV1 6 407 -246 1670 154 20 20 chr12 14572918 14573211 -129213244 + AluJo SINE Alu 1 293 -19 3819 123 51 47 chr12 14573211 14573460 -129212995 + MER39B LTR ERV1 407 653 0 238 313 61 61 chr12 14574078 14574225 -129212230 + L2 LINE L2 3122 3268 -4 2348 77 0 16 chr12 14574283 14574596 -129211859 - AluSq SINE Alu -5 308 1 34 42 0 0 chr12 14574621 14574669 -129211786 + AT_rich Low_complexity Low_complexity 1 48 0 202 267 0 0 chr12 14577198 14577243 -129209212 + C-rich Low_complexity Low_complexity 6 50 0 2368 72 0 3 chr12 14577692 14577996 -129208459 + AluY SINE Alu 2 304 -7 2020 115 3 10 chr12 14578305 14578601 -129207854 + AluSx SINE Alu 1 294 -18 247 326 47 31 chr12 14578644 14578837 -129207618 + L2 LINE L2 2887 3082 -190 1002 88 7 0 chr12 14578871 14579008 -129207447 - FLAM_C SINE Alu -5 138 1 311 265 59 52 chr12 14579094 14579230 -129207225 - MER5B DNA MER1_type 0 178 42 356 332 119 5 chr12 14579352 14579545 -129206910 - L3 LINE CR1 -693 884 670 23 0 0 0 chr12 14579804 14579827 -129206628 + AT_rich Low_complexity Low_complexity 1 23 0 186 118 0 0 chr12 14631232 14631266 -129155189 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 833 163 14 14 chr12 14631270 14631417 -129155038 - FRAM SINE Alu -30 146 1 428 339 89 6 chr12 14631563 14631736 -129154719 - MIR SINE MIR -43 219 31 416 250 0 46 chr12 14632301 14632409 -129154046 + MIR SINE MIR 19 121 -87 2383 115 120 5 chr12 14632600 14632984 -129153471 + MSTA LTR MaLR 1 428 0 463 286 193 26 chr12 14633031 14633342 -129153113 - MLT1L LTR MaLR -4 611 249 1257 249 50 69 chr12 14633526 14634047 -129152408 + MLT1J LTR MaLR 1 511 0 513 283 33 7 chr12 14634138 14634290 -129152165 + MIR SINE MIR 32 187 -75 327 178 42 119 chr12 14634357 14634475 -129151980 - MIR3 SINE MIR -10 198 90 2810 70 120 0 chr12 14635290 14635690 -129150765 + LTR7 LTR ERV1 1 448 -2 24034 94 8 13 chr12 14635692 14639525 -129146930 + HERVH LTR ERV1 1 3993 -3720 2343 123 0 6 chr12 14639527 14639860 -129146595 + HERVH LTR ERV1 4488 4818 -2895 520 227 20 27 chr12 14640157 14640307 -129146148 + L1MA10 LINE L1 6186 6334 0 418 276 43 9 chr12 14640788 14640904 -129145551 + MIR SINE MIR 63 182 -80 26 74 0 0 chr12 14640987 14641041 -129145414 + AT_rich Low_complexity Low_complexity 1 54 0 252 252 9 90 chr12 14642238 14642349 -129144106 + L2 LINE L2 2902 3003 -269 406 253 77 82 chr12 14642475 14642657 -129143798 - MIR SINE MIR -69 193 13 * 414 276 257 0 chr12 14642640 14642792 -129143663 + L2 LINE L2 3082 3272 0 262 313 0 0 chr12 14644073 14644156 -129142299 + (TGAA)n Simple_repeat Simple_repeat 3 85 0 352 349 47 6 chr12 14645143 14645315 -129141140 - MIR SINE MIR -82 180 2 204 125 0 0 chr12 14646861 14646893 -129139562 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 194 350 78 17 chr12 14647026 14647206 -129139249 - L2 LINE L2 -234 3038 2848 1796 148 148 34 chr12 14647338 14647722 -129138733 - MSTA LTR MaLR 0 428 1 3061 303 64 43 chr12 14647898 14649512 -129136943 + L2 LINE L2 1318 2964 -350 268 281 1 52 chr12 14649843 14649965 -129136490 - L1ME4a LINE L1 -49 6048 1193 4411 195 32 19 chr12 14650919 14652442 -129134013 + L1MA9 LINE L1 4739 6282 -30 378 195 0 0 chr12 14652499 14652581 -129133874 + (TATG)n Simple_repeat Simple_repeat 1 82 0 263 200 0 0 chr12 14652584 14652639 -129133816 + MER4-int LTR ERV1 1111 1165 -5433 225 154 0 0 chr12 14652639 14652678 -129133777 + (TG)n Simple_repeat Simple_repeat 2 40 0 1094 276 33 63 chr12 14652905 14653386 -129133069 + MER77 LTR ERV1 154 673 -11 390 64 0 0 chr12 14653681 14653728 -129132727 - 5S rRNA rRNA -74 47 1 447 290 83 10 chr12 14653732 14653925 -129132530 - L2 LINE L2 -401 2913 2707 915 257 8 34 chr12 14654660 14654897 -129131558 + MIR SINE MIR 12 242 -20 281 241 35 0 chr12 14655574 14655632 -129130823 + MER91 DNA MER1_type 130 189 -1 21 0 0 0 chr12 14655640 14655661 -129130794 + AT_rich Low_complexity Low_complexity 1 21 0 271 324 27 0 chr12 14655783 14655857 -129130598 + L2 LINE L2 3237 3312 -1 630 216 68 68 chr12 14656457 14656566 -129129889 - MER5A DNA MER1_type -5 184 73 1368 197 61 10 chr12 14656566 14656737 -129129718 - AluJo SINE Alu -2 310 116 201 39 0 0 chr12 14656737 14656763 -129129692 + (TTTAA)n Simple_repeat Simple_repeat 3 28 0 1368 197 61 10 chr12 14656763 14656886 -129129569 - AluJo SINE Alu -196 116 1 630 216 68 68 chr12 14656886 14656952 -129129503 - MER5A DNA MER1_type -115 74 9 2024 131 0 0 chr12 14658069 14658375 -129128080 - AluSx SINE Alu -6 306 1 2324 102 0 0 chr12 14659449 14659744 -129126711 - AluSx SINE Alu -17 295 1 1724 163 72 40 chr12 14660257 14660292 -129126163 + MLT1A1 LTR MaLR 1 33 -332 2350 90 3 0 chr12 14660292 14660582 -129125873 - AluSg SINE Alu -19 291 1 1724 163 72 40 chr12 14660582 14660895 -129125560 + MLT1A1 LTR MaLR 33 360 -5 384 358 101 33 chr12 14661249 14662035 -129124420 + L2 LINE L2 2134 2972 -342 234 245 20 92 chr12 14662126 14662224 -129124231 - MER102a DNA MER1_type -19 311 221 540 299 34 20 chr12 14662490 14662694 -129123761 + LTR67 LTR ERVL 347 553 -4 2216 178 2 65 chr12 14662763 14663257 -129123198 - MLT1D LTR MaLR 0 505 43 366 123 0 0 chr12 14663300 14663357 -129123098 + (TG)n Simple_repeat Simple_repeat 2 58 0 215 244 67 0 chr12 14663403 14663493 -129122962 + (TATG)n Simple_repeat Simple_repeat 4 99 0 454 322 105 45 chr12 14664232 14664751 -129121704 + L2 LINE L2 2730 3268 -4 265 366 69 17 chr12 14665307 14665482 -129120973 - MIR3 SINE MIR -17 191 8 6375 88 11 1 chr12 14666655 14667855 -129118600 + L1PB1 LINE L1 4932 6150 -1 687 276 87 5 chr12 14668007 14668203 -129118252 - MIR SINE MIR -44 218 7 294 179 18 0 chr12 14668411 14668467 -129117988 - LTR67 LTR ERVL 0 557 501 428 217 50 0 chr12 14668620 14668740 -129117715 - L1ME3A LINE L1 -15 6155 6030 908 241 139 8 chr12 14668771 14669277 -129117178 - L1ME3A LINE L1 -581 5581 5023 1384 225 0 29 chr12 14671005 14671312 -129115143 - AluJo SINE Alu -13 299 2 184 271 51 0 chr12 14672889 14672948 -129113507 - L2 LINE L2 -562 2752 2691 180 182 45 68 chr12 14674871 14674915 -129111540 + L2 LINE L2 3258 3300 -13 193 315 54 33 chr12 14675000 14675092 -129111363 - L3 LINE CR1 -174 1403 1310 1621 282 111 26 chr12 14676622 14677492 -129108963 + L2 LINE L2 2208 3152 -161 397 204 50 62 chr12 14677502 14677684 -129108771 - MLT1H LTR MaLR -11 614 439 685 288 132 3 chr12 14677923 14678211 -129108244 + L2 LINE L2 2986 3310 -3 235 311 111 0 chr12 14679423 14679558 -129106897 - MIR SINE MIR -15 247 98 399 323 58 56 chr12 14687350 14687393 -129099062 + L2 LINE L2 2836 2877 -436 1862 174 0 0 chr12 14687393 14687691 -129098764 - AluJo SINE Alu -14 298 1 399 323 58 56 chr12 14687691 14688074 -129098381 + L2 LINE L2 2877 3263 -50 253 338 38 56 chr12 14688782 14689048 -129097407 + L2 LINE L2 2717 2977 -337 1933 154 3 3 chr12 14690715 14691020 -129095435 - AluJb SINE Alu -7 305 1 254 319 14 21 chr12 14692017 14692161 -129094294 + GA-rich Low_complexity Low_complexity 1 143 0 803 234 5 43 chr12 14693397 14693581 -129092874 - AluJ SINE Alu -12 300 124 7303 39 2 5 chr12 14693588 14694468 -129091987 - L1PA5 LINE L1 0 6154 5277 965 121 0 8 chr12 14694469 14694601 -129091854 - AluJ SINE Alu -181 131 1 210 292 198 0 chr12 14696413 14696509 -129089946 - MIR SINE MIR -66 142 28 2144 121 3 3 chr12 14696870 14697177 -129089278 + AluSx SINE Alu 1 307 -5 261 83 0 0 chr12 14697348 14697384 -129089071 + (A)n Simple_repeat Simple_repeat 1 36 0 298 312 34 56 chr12 14697389 14697568 -129088887 + MIR SINE MIR 29 202 -60 265 331 115 13 chr12 14697632 14697789 -129088666 - MIR SINE MIR -70 192 20 511 138 0 0 chr12 14697796 14697876 -129088579 - MER116 DNA Mariner 0 80 1 944 159 0 7 chr12 14698214 14698365 -129088090 - MLT1A1 LTR MaLR -215 150 1 466 238 30 145 chr12 14698365 14698700 -129087755 + HAL1 LINE L1 2086 2458 -49 2659 143 0 36 chr12 14698700 14699147 -129087308 + Tigger2a DNA MER2_type 1 431 -3 311 65 22 0 chr12 14699148 14699194 -129087261 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 238 30 145 chr12 14699194 14699326 -129087129 + HAL1 LINE L1 2457 2501 -6 923 129 0 29 chr12 14699350 14699489 -129086966 - FLAM_C SINE Alu -8 135 1 1799 218 32 13 chr12 14700065 14700441 -129086014 + MSTD LTR MaLR 1 383 -13 1067 240 83 56 chr12 14701926 14702137 -129084318 - MLT1I LTR MaLR 0 409 180 2389 92 0 7 chr12 14702137 14702443 -129084012 - AluY SINE Alu -7 304 1 1067 240 83 56 chr12 14702443 14702627 -129083828 - MLT1I LTR MaLR -229 180 3 407 261 50 0 chr12 14702672 14702791 -129083664 + L2 LINE L2 3148 3272 0 2190 62 0 0 chr12 14702943 14703202 -129083253 + AluY SINE Alu 31 289 -22 332 245 10 20 chr12 14704655 14704753 -129081702 - MER58C DNA MER1_type -13 202 106 403 205 2 105 chr12 14704788 14704857 -129081598 - MER58 DNA MER1_type -122 93 55 2534 66 0 0 chr12 14704857 14705159 -129081296 + AluY SINE Alu 1 302 -9 403 205 2 105 chr12 14705159 14705209 -129081246 - MER58 DNA MER1_type -160 55 1 299 280 80 0 chr12 14706390 14706490 -129079965 - L2 LINE L2 -4 3268 3161 216 231 0 0 chr12 14707484 14707536 -129078919 - L2 LINE L2 0 3313 3262 2132 180 25 0 chr12 14707640 14707996 -129078459 + MLT1A1 LTR MaLR 1 365 0 303 198 74 25 chr12 14707999 14708080 -129078375 + L2 LINE L2 3188 3272 0 1825 121 45 28 chr12 14710189 14710478 -129075977 - AluSx SINE Alu -18 294 1 1369 288 90 42 chr12 14710698 14711333 -129075122 - MER115 DNA AcHobo -22 671 7 295 369 96 14 chr12 14711649 14712015 -129074440 + L2 LINE L2 2351 2746 -568 320 302 75 19 chr12 14712347 14712453 -129074002 + L2 LINE L2 3139 3250 -22 577 165 85 160 chr12 14713176 14713364 -129073091 - MLT2D LTR ERVL 0 414 241 1595 125 16 0 chr12 14714730 14714978 -129071477 - MSTA-int LTR MaLR -1326 254 3 530 128 0 0 chr12 14714980 14715058 -129071397 - MSTA LTR MaLR 0 428 351 2114 133 47 8 chr12 14715671 14716032 -129070423 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr12 14717005 14717038 -129069417 + AT_rich Low_complexity Low_complexity 1 33 0 775 304 77 19 chr12 14717129 14717560 -129068895 - L1MC4a LINE L1 -1723 6085 5630 1365 123 79 98 chr12 14717936 14718213 -129068242 + MER61D LTR ERV1 1 272 -229 185 324 14 14 chr12 14718515 14718586 -129067869 + MIR SINE MIR 23 93 -115 646 116 11 5 chr12 14719066 14719255 -129067200 + AluSg1 SINE Alu 16 296 -14 718 288 175 3 chr12 14719322 14719694 -129066761 - LTR33A LTR ERVL 0 523 88 349 300 6 69 chr12 14720257 14720417 -129066038 - MIR3 SINE MIR -6 202 53 292 236 28 28 chr12 14721055 14721161 -129065294 + GA-rich Low_complexity Low_complexity 3 108 0 1704 162 3 43 chr12 14721677 14721980 -129064475 + AluJb SINE Alu 22 312 0 642 214 34 87 chr12 14725596 14725802 -129060653 + MIR SINE MIR 7 201 -61 251 331 8 15 chr12 14725837 14725967 -129060488 + GA-rich Low_complexity Low_complexity 1 129 0 216 309 12 0 chr12 14725969 14726050 -129060405 + MIR SINE MIR 179 260 -2 376 337 71 42 chr12 14726974 14727380 -129059075 + L2 LINE L2 1851 2268 -1046 2170 55 4 0 chr12 14727391 14727647 -129058808 - AluY SINE Alu -12 299 43 662 226 28 83 chr12 14727792 14728044 -129058411 + MER112 DNA MER1_type 17 254 -6 2790 173 10 89 chr12 14728355 14728951 -129057504 - MLT2B3 LTR ERVL 0 554 6 4827 140 34 4 chr12 14728956 14730142 -129056313 - ERVL-B3 LTR ERVL -6 5758 4505 2322 159 23 5 chr12 14730143 14730539 -129055916 - MER65A LTR ERV1 0 445 43 22 0 0 0 chr12 14730539 14730561 -129055894 + AT_rich Low_complexity Low_complexity 1 22 0 2118 141 3 0 chr12 14730572 14730869 -129055586 - AluSx SINE Alu -14 298 1 362 67 0 33 chr12 14730869 14730929 -129055526 - MER65B LTR ERV1 -473 58 1 9434 138 25 1 chr12 14730929 14732353 -129054102 - ERVL-B3 LTR ERVL -1257 4507 3049 * 16657 166 31 20 chr12 14732350 14735237 -129051218 - ERVL-B3 LTR ERVL -2846 2918 2 2843 190 18 99 chr12 14735262 14735412 -129051043 + MER72 LTR ERV1 11 172 -550 1696 156 4 19 chr12 14735412 14735682 -129050773 - AluJo SINE Alu -40 272 7 2843 190 18 99 chr12 14735682 14736230 -129050225 + MER72 LTR ERV1 172 642 -80 3666 50 0 11 chr12 14736230 14736694 -129049761 - L1PA8 LINE L1 -1 6171 5713 2843 190 18 99 chr12 14736694 14736769 -129049686 + MER72 LTR ERV1 642 722 0 2767 186 22 32 chr12 14736769 14737299 -129049156 - MLT2B3 LTR ERVL -29 525 1 274 217 171 70 chr12 14737300 14737429 -129049026 + L2 LINE L2 3152 3293 -20 1182 127 35 6 chr12 14738078 14738251 -129048204 - AluSx SINE Alu -134 178 1 878 169 43 60 chr12 14738253 14738437 -129048018 + MLT2D LTR ERVL 234 414 0 259 337 71 51 chr12 14738801 14738858 -129047597 + L2 LINE L2 2924 2978 -294 2071 179 42 17 chr12 14738858 14739261 -129047194 - MLT2D LTR ERVL 0 414 2 259 337 71 51 chr12 14739261 14739458 -129046997 + L2 LINE L2 2978 3183 -89 202 331 15 59 chr12 14739764 14739900 -129046555 + MIR SINE MIR 61 190 -72 2089 141 0 0 chr12 14739952 14740249 -129046206 - AluSx SINE Alu -15 297 1 1763 120 108 22 chr12 14740886 14741202 -129045253 - MER57A LTR ERV1 0 403 61 431 88 0 0 chr12 14741332 14741389 -129045066 - MER57A LTR ERV1 -346 57 1 470 294 57 6 chr12 14741511 14741688 -129044767 + MIR SINE MIR 71 256 -6 23 33 0 0 chr12 14742301 14742331 -129044124 + AT_rich Low_complexity Low_complexity 1 30 0 229 242 0 55 chr12 14742490 14742581 -129043874 + G-rich Low_complexity Low_complexity 2 87 0 410 252 0 26 chr12 14743141 14743256 -129043199 - MIR SINE MIR -34 228 117 313 265 28 18 chr12 14745704 14745815 -129040640 + MIR3 SINE MIR 77 189 -19 222 246 58 0 chr12 14745824 14745893 -129040562 + MIR SINE MIR 82 154 -108 2629 69 149 0 chr12 14746202 14746592 -129039863 - LTR7 LTR ERV1 -2 448 1 2310 102 59 13 chr12 14746592 14746965 -129039490 - HERVH LTR ERV1 0 7713 7324 1380 143 19 0 chr12 14746965 14747181 -129039274 - HERVH LTR ERV1 -1894 5819 5600 1883 177 3 0 chr12 14747182 14747499 -129038956 - HERVH LTR ERV1 -2564 5149 4832 973 248 24 24 chr12 14747661 14747951 -129038504 - AluY SINE Alu -11 290 1 1000 165 21 21 chr12 14748528 14748722 -129037733 + MLT1A1 LTR MaLR 10 203 -162 253 344 108 23 chr12 14749041 14749524 -129036931 - L2 LINE L2 -481 2833 2310 182 314 91 58 chr12 14750227 14750348 -129036107 + L3 LINE CR1 967 1091 -486 273 253 44 22 chr12 14750688 14750779 -129035676 - MER117 DNA MER1_type -60 137 45 662 114 9 19 chr12 14754682 14754787 -129031668 - FLAM_A SINE Alu -9 133 30 3119 158 53 23 chr12 14754804 14755380 -129031075 - MER6A DNA MER2_type -19 586 -4 599 75 37 9 chr12 14756665 14756772 -129029683 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 842 139 0 8 chr12 14757359 14757481 -129028974 + AluJb SINE Alu 5 125 -187 634 220 38 13 chr12 14757627 14757786 -129028669 - MIR SINE MIR -23 239 77 262 269 103 32 chr12 14757905 14758061 -129028394 + MIR SINE MIR 29 195 -67 2241 200 82 21 chr12 14758103 14758303 -129028152 + MLT1F LTR MaLR 1 187 -355 2725 90 0 0 chr12 14758303 14758658 -129027797 + THE1A LTR MaLR 1 355 0 2241 200 82 21 chr12 14758658 14758968 -129027487 + MLT1F LTR MaLR 187 542 0 199 314 42 8 chr12 14759368 14759486 -129026969 + L2 LINE L2 2771 2892 -422 180 0 0 0 chr12 14759490 14759510 -129026945 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 388 336 28 0 chr12 14760508 14760651 -129025804 + MIR SINE MIR 33 179 -83 1438 229 132 24 chr12 14760817 14761272 -129025183 - MER74A LTR ERVL 0 558 55 1185 285 54 29 chr12 14761401 14761920 -129024535 - HAL1 LINE L1 -1245 1262 731 1223 300 115 4 chr12 14761928 14762408 -129024047 - HAL1 LINE L1 -1972 535 3 834 219 61 100 chr12 14762710 14763021 -129023434 + MLT1A1 LTR MaLR 4 302 -63 262 183 267 0 chr12 14763022 14763082 -129023373 - L1M4c LINE L1 -5833 551 476 240 59 0 0 chr12 14763182 14763216 -129023239 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1781 157 7 7 chr12 14763219 14763506 -129022949 - AluSx SINE Alu -25 287 1 2160 101 44 6 chr12 14763540 14763857 -129022598 - L1PA11 LINE L1 0 6174 5846 587 135 0 0 chr12 14763858 14763947 -129022508 + L1MA2 LINE L1 6196 6284 -20 369 275 92 0 chr12 14766428 14766570 -129019885 + MER112 DNA MER1_type 97 251 -9 270 0 0 0 chr12 14766614 14766644 -129019811 + (A)n Simple_repeat Simple_repeat 1 30 0 902 290 87 29 chr12 14766971 14767528 -129018927 - L1MEd LINE L1 -4862 1257 744 820 185 6 13 chr12 14767859 14768016 -129018439 - L1MA4 LINE L1 -9 6291 6136 358 328 22 8 chr12 14768294 14768428 -129018027 - L1MEd LINE L1 -5423 696 561 229 271 103 19 chr12 14768633 14768740 -129017715 - L1MEd LINE L1 -5993 126 11 375 248 168 18 chr12 14768758 14768871 -129017584 + L2 LINE L2 3139 3268 -4 408 330 50 17 chr12 14770313 14770492 -129015963 - MIR SINE MIR -74 188 4 324 83 0 0 chr12 14770743 14770791 -129015664 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 368 56 0 chr12 14771388 14771513 -129014942 - L2 LINE L2 -3 3310 3179 614 218 60 68 chr12 14772183 14772497 -129013958 - LTR45B LTR ERV1 0 594 309 25 0 0 0 chr12 14772592 14772617 -129013838 + AT_rich Low_complexity Low_complexity 1 25 0 201 260 0 40 chr12 14773587 14773637 -129012818 + polypurine Low_complexity Low_complexity 1 48 0 1544 174 0 8 chr12 14773666 14773913 -129012542 - AluSx SINE Alu -65 247 3 528 16 0 0 chr12 14773995 14774056 -129012399 + (TA)n Simple_repeat Simple_repeat 1 61 0 873 137 0 58 chr12 14774060 14774199 -129012256 - FLAM_C SINE Alu -1 132 2 474 285 135 32 chr12 14774779 14775091 -129011364 + L1MEd LINE L1 895 1238 -4881 2416 100 0 3 chr12 14775401 14775711 -129010744 - AluSq SINE Alu -4 309 1 809 240 125 0 chr12 14775717 14775909 -129010546 + MER20 DNA MER1_type 3 218 -1 1103 196 22 48 chr12 14776058 14776329 -129010126 - L1MA10 LINE L1 -18 6316 6053 835 22 0 0 chr12 14776432 14776524 -129009931 - L1PA3 LINE L1 -4 6151 6060 21 71 0 0 chr12 14776701 14776743 -129009712 + AT_rich Low_complexity Low_complexity 1 42 0 1832 167 3 3 chr12 14777254 14777554 -129008901 + AluJo SINE Alu 1 300 -12 218 233 0 0 chr12 14778704 14778747 -129007708 + (TA)n Simple_repeat Simple_repeat 1 43 0 658 260 117 17 chr12 14779180 14779411 -129007044 - MIR SINE MIR -2 260 7 303 288 86 61 chr12 14779528 14779726 -129006729 - L1ME3A LINE L1 -5 6165 5963 1057 246 96 11 chr12 14779827 14780180 -129006275 - L1MC5 LINE L1 -433 7528 7146 1240 233 23 68 chr12 14780189 14780724 -129005731 - L1MC5 LINE L1 -832 6976 6488 1765 217 37 17 chr12 14780804 14781214 -129005241 + LTR52 LTR ERVL 1 418 -3 248 361 26 16 chr12 14781440 14781634 -129004821 - HAL1b LINE L1 -708 640 445 351 305 52 44 chr12 14781825 14782232 -129004223 - HAL1b LINE L1 -901 447 38 333 315 57 47 chr12 14783253 14783637 -129002818 - HAL1b LINE L1 -908 440 53 287 225 47 152 chr12 14784272 14784548 -129001907 - LTR41 LTR ERVL 0 773 527 511 228 76 35 chr12 14784859 14785004 -129001451 - LTR41 LTR ERVL -622 151 1 236 262 19 37 chr12 14785751 14785858 -129000597 - MLT-int LTR MaLR -30 1705 1601 2347 97 3 0 chr12 14785982 14786292 -129000163 - AluSp SINE Alu -2 311 1 300 247 41 0 chr12 14787203 14787313 -128999142 - MLT1F LTR MaLR 0 542 280 2460 38 41 0 chr12 14788847 14789137 -128997318 - AluY SINE Alu -9 302 1 286 310 69 0 chr12 14789728 14789844 -128996611 + L2 LINE L2 3136 3259 -13 767 239 45 0 chr12 14790983 14791159 -128995296 - MIR SINE MIR -10 252 69 205 179 0 0 chr12 14791185 14791224 -128995231 + L2 LINE L2 3275 3313 0 1078 223 50 88 chr12 14791244 14791620 -128994835 - MLT1A1 LTR MaLR 0 365 4 190 229 0 0 chr12 14792667 14792702 -128993753 - L2 LINE L2 -3 3310 3276 3289 131 3 74 chr12 14792861 14793495 -128992960 - L1MA5 LINE L1 0 6300 5712 231 392 150 7 chr12 14793605 14793758 -128992697 - L2 LINE L2 -54 3218 3044 569 296 47 6 chr12 14793775 14793944 -128992511 - MIR3 SINE MIR -13 195 20 795 112 0 0 chr12 14794624 14794740 -128991715 - L1MA3 LINE L1 -21 6284 6169 195 236 139 0 chr12 14796099 14796171 -128990284 + MIR3 SINE MIR 104 185 -23 665 258 167 65 chr12 14797607 14797991 -128988464 + MLT1J1 LTR MaLR 53 475 -36 246 330 70 0 chr12 14798567 14798682 -128987773 - MIR3 SINE MIR -48 160 38 2579 139 131 36 chr12 14798713 14799188 -128987267 - MLT2B1 LTR ERVL 0 520 1 555 209 6 52 chr12 14799338 14799510 -128986945 - LTR7 LTR ERV1 -17 433 270 1771 196 115 79 chr12 14799720 14800301 -128986154 - MLT1E2 LTR MaLR -24 602 1 423 0 0 0 chr12 14801093 14801140 -128985315 + (TG)n Simple_repeat Simple_repeat 1 47 0 393 223 29 0 chr12 14802753 14802892 -128983563 + CT-rich Low_complexity Low_complexity 2 144 0 382 345 103 30 chr12 14802900 14803541 -128982914 + L2 LINE L2 2554 3251 -21 223 282 29 94 chr12 14804035 14804205 -128982250 - MIR SINE MIR -1 261 103 307 188 130 0 chr12 14804543 14804612 -128981843 + L2 LINE L2 3200 3277 -36 806 219 97 25 chr12 14804775 14805357 -128981098 - MER4C LTR ERV1 0 695 1 465 119 0 60 chr12 14805396 14805411 -128981044 + MER96 DNA MER1_type? 1 15 -160 2623 178 78 98 chr12 14805411 14806153 -128980302 + LTR8A LTR ERV1 1 727 0 465 119 0 60 chr12 14806153 14806221 -128980234 + MER96 DNA MER1_type? 15 79 -96 1247 207 54 34 chr12 14806458 14806811 -128979644 - L1MD2 LINE L1 0 6359 6000 399 350 34 25 chr12 14807056 14807293 -128979162 + MARNA DNA Mariner 317 555 -31 2392 97 3 0 chr12 14807431 14807731 -128978724 - AluSx SINE Alu -10 302 2 776 288 56 84 chr12 14808146 14808608 -128977847 + MER115 DNA AcHobo 1 449 -244 299 250 39 90 chr12 14808949 14809063 -128977392 - MER5B DNA MER1_type -2 176 71 1053 166 17 0 chr12 14809063 14809238 -128977217 - MER5B DNA MER1_type 0 178 1 299 250 39 90 chr12 14809238 14809279 -128977176 - MER5B DNA MER1_type -107 71 29 902 324 141 34 chr12 14810288 14811219 -128975236 + L3 LINE CR1 198 1227 -350 3386 115 6 12 chr12 14811318 14811525 -128974930 + MER1A DNA MER1_type 53 260 -2442 2230 104 16 3 chr12 14811525 14811832 -128974623 + AluSx SINE Alu 1 311 -1 3386 115 6 12 chr12 14811832 14812104 -128974351 + MER1A DNA MER1_type 260 529 0 197 32 0 32 chr12 14813874 14813905 -128972550 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 44049 31 21 1 chr12 14813906 14819932 -128966523 - L1PA3 LINE L1 -4 6151 4 8240 17 0 0 chr12 14819934 14820982 -128965473 + L1PA2 LINE L1 5134 6181 0 14966 27 1 0 chr12 14820984 14822711 -128963744 - L1P LINE L1 -999 5147 3420 1941 162 0 0 chr12 14822713 14823009 -128963446 - AluSx SINE Alu -16 296 1 2056 193 56 40 chr12 14823071 14823568 -128962887 + MLT1D LTR MaLR 1 505 0 468 274 110 18 chr12 14823725 14823944 -128962511 + MIR SINE MIR 23 261 -1 325 294 184 0 chr12 14824037 14824173 -128962282 - MIR SINE MIR 0 262 102 2102 70 0 0 chr12 14824177 14824435 -128962020 + AluY SINE Alu 1 258 -53 2462 138 45 8 chr12 14824435 14824835 -128961620 + MSTA LTR MaLR 14 428 0 200 236 77 4 chr12 14824836 14824907 -128961548 - MIR SINE MIR -112 96 32 2160 122 7 0 chr12 14825775 14826078 -128960377 - AluSx SINE Alu -7 305 1 301 356 5 16 chr12 14827932 14828120 -128958335 + L2 LINE L2 2560 2745 -569 205 320 27 13 chr12 14828204 14828279 -128958176 - MER5A DNA MER1_type -85 104 29 22 0 0 0 chr12 14828635 14828657 -128957798 + AT_rich Low_complexity Low_complexity 1 22 0 190 300 40 0 chr12 14829195 14829245 -128957210 + L2 LINE L2 3196 3247 -25 28 48 0 0 chr12 14829344 14829386 -128957069 + AT_rich Low_complexity Low_complexity 1 42 0 1817 211 34 5 chr12 14829713 14830101 -128956354 - MLT1C LTR MaLR 0 467 69 2194 125 3 3 chr12 14830101 14830406 -128956049 - THE1B LTR MaLR 0 364 60 25 31 0 0 chr12 14831703 14831735 -128954720 + AT_rich Low_complexity Low_complexity 1 32 0 16664 177 30 20 chr12 14831942 14832070 -128954385 + L1MA4 LINE L1 6 131 -6351 1627 175 39 29 chr12 14832070 14832378 -128954077 + AluJo SINE Alu 1 311 -1 16664 177 30 20 chr12 14832378 14838549 -128947906 + L1MA4 LINE L1 131 6477 -5 656 297 131 50 chr12 14838606 14839027 -128947428 - L2 LINE L2 -669 2645 2191 333 329 98 14 chr12 14839985 14840128 -128946327 + MER5A DNA MER1_type 9 163 -26 367 269 199 13 chr12 14840170 14840326 -128946129 - MER5A DNA MER1_type -4 185 1 180 0 0 0 chr12 14840753 14840773 -128945682 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2514 60 0 25 chr12 14841885 14842199 -128944256 + AluY SINE Alu 1 306 -5 343 68 0 0 chr12 14842232 14842276 -128944179 + MADE1 DNA Mariner 35 78 -2 276 297 62 31 chr12 14842511 14842639 -128943816 + MIR SINE MIR 126 257 -5 836 269 149 36 chr12 14843192 14843440 -128943015 + L2 LINE L2 2851 3070 -243 320 0 25 0 chr12 14843440 14843480 -128942975 + (TG)n Simple_repeat Simple_repeat 1 41 0 836 269 149 36 chr12 14843480 14843647 -128942808 + L2 LINE L2 3070 3313 0 377 245 58 36 chr12 14843653 14843792 -128942663 - MIR3 SINE MIR -63 145 4 397 330 154 0 chr12 14843919 14844101 -128942354 + L2 LINE L2 2855 3064 -249 1950 131 125 12 chr12 14844101 14844429 -128942026 + MLT1A1 LTR MaLR 1 365 0 302 365 43 26 chr12 14845341 14845456 -128940999 - L2 LINE L2 -17 3255 3139 1587 75 0 75 chr12 14845991 14846230 -128940225 + AluSp SINE Alu 91 311 -2 223 352 14 28 chr12 14846495 14846566 -128939889 - L2 LINE L2 -18 3254 3185 250 363 48 8 chr12 14847099 14847223 -128939232 + L3 LINE CR1 1407 1535 -42 195 316 38 13 chr12 14847871 14847950 -128938505 + L3b LINE CR1 1353 1433 -150 536 303 65 22 chr12 14849270 14849522 -128936933 + MIR SINE MIR 3 262 0 210 200 15 31 chr12 14849770 14849835 -128936620 + (TG)n Simple_repeat Simple_repeat 2 65 0 201 176 0 0 chr12 14849830 14849864 -128936591 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 * 1589 209 103 32 chr12 14850341 14850777 -128935678 + MLT1C LTR MaLR 1 467 0 1373 201 14 7 chr12 14852009 14852288 -128934167 - L1PA16 LINE L1 -4 6162 5882 509 341 130 24 chr12 14852288 14852739 -128933716 + L2 LINE L2 2097 2599 -715 1014 211 82 5 chr12 14852896 14853104 -128933351 + MER58A DNA MER1_type 1 224 0 320 349 0 0 chr12 14853445 14853554 -128932901 + L2 LINE L2 2624 2732 -582 390 306 150 60 chr12 14853745 14854111 -128932344 + L2 LINE L2 2874 3272 0 267 378 30 43 chr12 14854394 14854624 -128931831 + L2 LINE L2 2819 3045 -227 306 0 0 0 chr12 14854687 14854721 -128931734 + (T)n Simple_repeat Simple_repeat 1 34 0 222 213 115 33 chr12 14854755 14854816 -128931639 + L2 LINE L2 3168 3233 -39 707 206 0 32 chr12 14854931 14855057 -128931398 + AluJo SINE Alu 5 126 -186 26 30 0 0 chr12 14855057 14855090 -128931365 + AT_rich Low_complexity Low_complexity 1 33 0 2078 65 0 0 chr12 14855118 14855364 -128931091 - L1PA7 LINE L1 -5 6149 5904 1091 166 5 26 chr12 14855364 14855557 -128930898 + AluJo SINE Alu 116 304 -8 296 258 67 0 chr12 14856662 14856751 -128929704 + L1ME4a LINE L1 5518 5612 -509 295 350 78 16 chr12 14856838 14857095 -128929360 + MLT1K LTR MaLR 81 353 -235 1117 228 176 24 chr12 14857123 14857583 -128928872 + L1ME4a LINE L1 5589 6118 -3 253 221 0 23 chr12 14858286 14858372 -128928083 + CT-rich Low_complexity Low_complexity 1 84 0 384 294 96 37 chr12 14859719 14859937 -128926518 - MIR SINE MIR -8 254 24 724 279 77 0 chr12 14860189 14860411 -128926044 + MIR SINE MIR 2 240 -22 991 279 110 7 chr12 14860445 14860753 -128925702 + L1ME3A LINE L1 5537 5876 -294 8177 121 10 43 chr12 14860764 14862100 -128924355 - THE1C-int LTR MaLR -286 1294 3 2065 153 38 19 chr12 14862102 14862468 -128923987 - THE1C LTR MaLR 0 375 3 2988 194 36 23 chr12 14862572 14863184 -128923271 + MLT1E3 LTR MaLR 2 621 -3 691 76 0 11 chr12 14863209 14863301 -128923154 - 5S rRNA rRNA -30 91 1 1487 222 48 52 chr12 14864397 14864919 -128921536 - L1MC4 LINE L1 -25 8017 7498 266 275 147 18 chr12 14864995 14865104 -128921351 - L2 LINE L2 -213 3059 2937 291 247 22 0 chr12 14865286 14865375 -128921080 - L1ME LINE L1 -325 5796 5706 208 158 26 0 chr12 14865389 14865427 -128921028 - L2 LINE L2 -20 3252 3214 * 241 320 99 33 chr12 14865426 14865607 -128920848 - MIR SINE MIR -20 242 50 181 200 29 57 chr12 14865837 14865907 -128920548 - L2 LINE L2 -524 2790 2723 961 244 133 4 chr12 14865980 14866250 -128920205 - L1MC4 LINE L1 -531 7511 7207 6272 167 44 32 chr12 14866344 14866707 -128919748 - L1MB1 LINE L1 -1 6167 5810 1946 102 113 0 chr12 14866707 14866982 -128919473 - AluSq SINE Alu -7 306 1 6272 167 44 32 chr12 14866982 14868811 -128917644 - L1MB1 LINE L1 -358 5810 3951 2050 237 70 15 chr12 14868817 14869413 -128917042 - L1MC4a LINE L1 -840 6968 6340 2035 189 88 16 chr12 14869426 14869912 -128916543 - L1ME2 LINE L1 -34 6130 5610 297 219 0 16 chr12 14869912 14869976 -128916479 + MLT1G1 LTR MaLR 1 63 -532 243 353 210 8 chr12 14870167 14870666 -128915789 + L2 LINE L2 2263 2862 -452 237 342 99 30 chr12 14870761 14871024 -128915431 + L2 LINE L2 3021 3301 -12 446 349 109 16 chr12 14871467 14871897 -128914558 + L2 LINE L2 2327 2796 -518 190 256 0 128 chr12 14872061 14872217 -128914238 + L2 LINE L2 2924 3059 -213 375 337 85 67 chr12 14873083 14873531 -128912924 + L2 LINE L2 2810 3265 -7 23 33 0 0 chr12 14874427 14874457 -128911998 + AT_rich Low_complexity Low_complexity 1 30 0 980 108 2 6 chr12 14875001 14875170 -128911285 - THE1C LTR MaLR -189 166 1 378 0 0 0 chr12 14875849 14875891 -128910564 + (TG)n Simple_repeat Simple_repeat 2 43 0 2471 97 44 36 chr12 14876160 14876521 -128909934 + THE1B LTR MaLR 1 364 0 201 329 12 0 chr12 14877311 14877393 -128909062 + (CACCAT)n Simple_repeat Simple_repeat 1 83 0 1742 189 96 23 chr12 14878094 14878490 -128907965 + MLT1C LTR MaLR 1 425 -42 1946 165 0 10 chr12 14879568 14879877 -128906578 - AluJo SINE Alu -6 306 1 308 205 12 72 chr12 14880544 14880627 -128905828 - L2 LINE L2 -10 3303 3226 21 36 0 0 chr12 14881446 14881474 -128904981 + AT_rich Low_complexity Low_complexity 1 28 0 326 286 109 26 chr12 14881632 14881898 -128904557 + L1ME3A LINE L1 2220 2507 -3639 770 118 0 0 chr12 14881974 14882076 -128904379 - U6 snRNA snRNA -5 102 1 504 293 100 20 chr12 14882082 14882482 -128903973 + L1ME3A LINE L1 2539 2970 -3176 476 232 61 67 chr12 14882483 14882647 -128903808 - MER63A DNA MER1_type -5 205 43 2983 284 100 14 chr12 14882682 14884287 -128902168 + L1ME3A LINE L1 2962 4704 -1442 329 259 84 23 chr12 14884304 14884435 -128902020 + L1ME3A LINE L1 4869 5007 -1139 1043 248 104 60 chr12 14884459 14885196 -128901259 + L1ME3A LINE L1 5174 5949 -221 447 294 247 9 chr12 14885710 14886030 -128900425 - L2 LINE L2 -6 3266 2871 187 295 49 16 chr12 14886213 14886274 -128900181 - L2 LINE L2 -10 3262 3200 480 253 34 13 chr12 14886837 14886989 -128899466 + MIR SINE MIR 38 192 -62 1843 117 19 0 chr12 14888561 14888817 -128897638 + AluSq SINE Alu 1 261 -52 288 53 0 0 chr12 14888831 14888869 -128897586 + (TG)n Simple_repeat Simple_repeat 1 38 0 2341 93 0 7 chr12 14889276 14889578 -128896877 - AluSc SINE Alu -9 300 1 213 275 43 0 chr12 14890144 14890213 -128896242 + MIR SINE MIR 104 175 -87 184 290 0 32 chr12 14890193 14890255 -128896200 + L2 LINE L2 3242 3301 -12 * 235 247 52 13 chr12 14890614 14890691 -128895764 - L2 LINE L2 -1 3312 3233 348 64 0 0 chr12 14891501 14891548 -128894907 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 242 167 25 chr12 14891896 14892016 -128894439 - MIR SINE MIR -55 153 17 683 228 142 27 chr12 14892213 14892432 -128894023 + MIR SINE MIR 2 245 -17 318 233 116 0 chr12 14893588 14893674 -128892781 - MIR SINE MIR -76 186 91 200 209 134 15 chr12 14894529 14894596 -128891859 + L2 LINE L2 2889 2963 -350 262 226 220 30 chr12 14895335 14895503 -128890952 - MIR SINE MIR -62 200 1 279 315 72 55 chr12 14895513 14895694 -128890761 - L2 LINE L2 -21 3251 3068 1195 204 68 34 chr12 14896734 14897028 -128889427 + MER93b LTR ERV1 1 304 -69 194 184 92 53 chr12 14897236 14897312 -128889143 - MER5A DNA MER1_type -1 188 110 190 279 29 0 chr12 14897256 14897324 -128889131 + MER5A DNA MER1_type 33 102 -87 * 311 299 68 0 chr12 14899340 14899457 -128886998 + L1M4 LINE L1 4062 4186 -1960 899 139 0 22 chr12 14899457 14899594 -128886861 + FLAM_C SINE Alu 1 134 -9 2236 264 59 53 chr12 14899594 14899840 -128886615 + L1M4 LINE L1 4176 4419 -1727 1487 109 33 0 chr12 14899840 14900050 -128886405 + AluSg/x SINE Alu 83 299 -11 2236 264 59 53 chr12 14900050 14901015 -128885440 + L1M4 LINE L1 4419 5395 -751 212 311 104 9 chr12 14901475 14901581 -128884874 - L2 LINE L2 -8 3264 3149 2442 110 52 25 chr12 14902472 14902837 -128883618 - THE1C LTR MaLR 0 375 1 755 73 257 0 chr12 14902927 14903036 -128883419 - MER85 DNA T2_type 0 139 3 1985 140 13 13 chr12 14904888 14905195 -128881260 - AluSx SINE Alu -5 307 1 3065 222 115 48 chr12 14905493 14906650 -128879805 + L1MC4 LINE L1 6808 8042 0 593 213 148 35 chr12 14906830 14907032 -128879423 - MIR SINE MIR -11 251 27 2269 115 0 0 chr12 14907034 14907330 -128879125 - AluSx SINE Alu -16 296 1 634 265 18 84 chr12 14908075 14908254 -128878201 + MIR SINE MIR 1 166 -63 1852 175 83 35 chr12 14910456 14910804 -128875651 + MLT1A1 LTR MaLR 1 365 0 1348 148 49 9 chr12 14911156 14911379 -128875076 + AluSg/x SINE Alu 79 310 0 1377 168 0 50 chr12 14911603 14911841 -128874614 + Tigger5 DNA MER2_type 1 226 -2097 * 2803 152 50 12 chr12 14911824 14912304 -128874151 + Tigger5 DNA MER2_type 1826 2323 0 365 152 65 54 chr12 14912797 14912889 -128873566 + MLT1I LTR MaLR 68 160 -249 232 286 24 0 chr12 14912958 14913042 -128873413 + MLT1J2 LTR MaLR 365 450 0 188 228 130 54 chr12 14913081 14913173 -128873282 + L2 LINE L2 2685 2783 -531 6955 119 30 8 chr12 14915635 14917372 -128869083 - L1MA1 LINE L1 -4 6298 4525 446 272 56 44 chr12 14917489 14917669 -128868786 - MIR3 SINE MIR -23 185 4 827 206 120 5 chr12 14917818 14918002 -128868453 + MER3 DNA MER1_type 1 205 -4 304 289 48 0 chr12 14918491 14918574 -128867881 - L2 LINE L2 -1 3271 3185 1436 235 77 14 chr12 14919065 14919494 -128866961 - HsTC2 DNA Tc2 0 1900 1269 1336 267 42 25 chr12 14919507 14919987 -128866468 - HsTC2 DNA Tc2 -1410 488 1 302 244 199 15 chr12 14920381 14920512 -128865943 - L2 LINE L2 0 3313 3159 1111 262 93 21 chr12 14922451 14922532 -128863923 + MLT1C LTR MaLR 17 91 -376 1969 56 0 0 chr12 14922532 14922763 -128863692 + AluY SINE Alu 70 300 -11 1111 262 93 21 chr12 14922763 14923101 -128863354 + MLT1C LTR MaLR 91 466 -1 1462 230 75 107 chr12 14923624 14924184 -128862271 - MLT1F1 LTR MaLR 0 567 1 630 294 32 37 chr12 14924408 14924626 -128861829 + MIR SINE MIR 38 254 -8 497 352 65 51 chr12 14927261 14927646 -128858809 - L2 LINE L2 -446 2868 2473 935 174 26 62 chr12 14927646 14927841 -128858614 + MER5A DNA MER1_type 1 188 -1 497 352 65 51 chr12 14927841 14927961 -128858494 - L2 LINE L2 -841 2473 2356 652 202 0 0 chr12 14929432 14929541 -128856914 + AluJb SINE Alu 154 262 -50 359 258 23 154 chr12 14930137 14930358 -128856097 + MIR SINE MIR 59 250 -12 766 189 112 39 chr12 14930372 14930578 -128855877 + MIR SINE MIR 12 232 -30 256 289 44 59 chr12 14930775 14930910 -128855545 + MER5A DNA MER1_type 56 188 -1 257 328 63 32 chr12 14931361 14931550 -128854905 - L2 LINE L2 -527 2787 2593 2254 304 128 27 chr12 14931705 14933424 -128853031 - L2 LINE L2 -6 3307 1413 11186 194 38 25 chr12 14933441 14934380 -128852075 - L1MB3 LINE L1 -6 6410 5485 640 162 36 0 chr12 14934380 14934491 -128851964 - L1MC1 LINE L1 0 6333 6219 11186 194 38 25 chr12 14934491 14938842 -128847613 - L1MB3 LINE L1 -931 5485 976 2122 99 72 77 chr12 14938842 14939217 -128847238 + THE1C LTR MaLR 3 375 0 11186 194 38 25 chr12 14939217 14939725 -128846730 - L1MB3 LINE L1 -5440 976 476 240 59 0 0 chr12 14939825 14939859 -128846596 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1799 161 7 3 chr12 14939862 14940148 -128846307 - AluSx SINE Alu -25 287 1 14802 153 19 3 chr12 14940182 14943365 -128843090 - L1PA11 LINE L1 0 6174 2938 2584 183 62 7 chr12 14943365 14943814 -128842641 - L1MB3 LINE L1 -5909 475 2 740 175 15 44 chr12 14943822 14943959 -128842496 - FLAM_A SINE Alu 0 133 1 486 275 68 48 chr12 14944058 14944265 -128842190 - MIR SINE MIR 0 262 52 887 289 135 33 chr12 14944279 14944760 -128841695 - L2 LINE L2 -1988 1326 797 40 0 0 0 chr12 14945391 14945431 -128841024 + AT_rich Low_complexity Low_complexity 1 40 0 701 262 43 19 chr12 14945588 14945798 -128840657 + MER112 DNA MER1_type 6 220 -40 288 332 47 25 chr12 14946931 14947166 -128839289 - L2 LINE L2 -888 2426 2187 320 189 0 103 chr12 14948637 14948995 -128837460 + GA-rich Low_complexity Low_complexity 1 321 0 291 351 24 6 chr12 14948689 14948857 -128837598 + (GAATG)n Simple_repeat Simple_repeat 1 171 0 * 349 386 0 6 chr12 14948850 14949098 -128837357 + (GAGTG)n Simple_repeat Simple_repeat 1 246 0 414 299 0 17 chr12 14949248 14949365 -128837090 - L2 LINE L2 -1 3312 3198 540 308 48 0 chr12 14949374 14949582 -128836873 + MIR SINE MIR 40 257 -5 445 308 99 19 chr12 14950136 14950347 -128836108 + MIR SINE MIR 25 252 -10 2234 105 7 0 chr12 14950349 14950653 -128835802 - AluSx SINE Alu -1 311 6 885 247 135 29 chr12 14951624 14952009 -128834446 + L2 LINE L2 2887 3312 -1 181 270 70 30 chr12 14952205 14952305 -128834150 - L2 LINE L2 -190 3123 3020 207 298 142 52 chr12 14952502 14952811 -128833644 - L2 LINE L2 -557 2757 2421 184 286 13 26 chr12 14953066 14953143 -128833312 + MIR SINE MIR 88 163 -99 180 0 0 0 chr12 14954406 14954426 -128832029 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 384 254 91 48 chr12 14955497 14955662 -128830793 + MIR SINE MIR 41 212 -50 480 190 15 102 chr12 14956055 14956192 -128830263 + L2 LINE L2 3189 3313 0 31 58 0 0 chr12 14956464 14956516 -128829939 + AT_rich Low_complexity Low_complexity 1 52 0 472 256 100 0 chr12 14957235 14957395 -128829060 - LTR50 LTR ERVL -619 176 1 394 326 11 45 chr12 14957788 14957966 -128828489 + MIR SINE MIR 81 252 -10 372 281 195 32 chr12 14958284 14958497 -128827958 + MIR SINE MIR 9 259 -3 592 214 89 36 chr12 14959948 14960116 -128826339 + MER5B DNA MER1_type 2 178 0 1706 174 10 3 chr12 14960836 14961166 -128825289 + AluJb SINE Alu 5 312 0 868 215 92 33 chr12 14961958 14962349 -128824106 + L1MC5 LINE L1 7393 7806 -155 250 254 0 0 chr12 14963305 14963360 -128823095 + (CA)n Simple_repeat Simple_repeat 2 56 0 6381 266 140 23 chr12 14964841 14967757 -128818698 + L2 LINE L2 41 3296 -17 279 133 0 0 chr12 14970233 14970278 -128816177 + (TATG)n Simple_repeat Simple_repeat 4 48 0 433 211 88 88 chr12 14970380 14970527 -128815928 + L2 LINE L2 3166 3312 -1 213 227 288 38 chr12 14970601 14970733 -128815722 + MIR SINE MIR 84 248 -14 243 200 75 50 chr12 14970989 14971069 -128815386 + MIR SINE MIR 100 181 -81 204 355 0 16 chr12 14972626 14972688 -128813767 - L2 LINE L2 -207 3065 3005 765 322 70 23 chr12 14973224 14973609 -128812846 - L3b LINE CR1 -78 1505 1103 195 254 36 18 chr12 14974174 14974229 -128812226 - L2 LINE L2 -16 3256 3201 425 235 22 44 chr12 14974513 14974649 -128811806 - MIR SINE MIR 0 262 130 302 252 148 0 chr12 14975602 14975737 -128810718 + L1ME LINE L1 5672 5826 -295 468 285 32 19 chr12 14976274 14976432 -128810023 - MER91B DNA MER1_type -12 178 19 245 344 16 62 chr12 14977767 14977895 -128808560 + L2 LINE L2 3147 3268 -4 1868 153 18 49 chr12 14978057 14978444 -128808011 + THE1C LTR MaLR 1 375 0 705 302 133 7 chr12 14978501 14978802 -128807653 - MLT1G1 LTR MaLR -2 593 255 415 221 14 114 chr12 14978814 14978954 -128807501 - MLT1G1 LTR MaLR -421 134 9 2189 113 3 3 chr12 14979459 14979752 -128806703 + AluSg SINE Alu 1 293 -17 2179 112 0 0 chr12 14980363 14980658 -128805797 + AluSx SINE Alu 1 295 -17 423 0 0 0 chr12 14984642 14984689 -128801766 + (TA)n Simple_repeat Simple_repeat 2 48 0 415 245 64 28 chr12 14984727 14984870 -128801585 + MIR3 SINE MIR 12 162 -46 246 233 83 0 chr12 14984929 14984989 -128801466 + L2 LINE L2 3244 3308 -5 242 293 121 7 chr12 14985623 14985763 -128800692 + MER5B DNA MER1_type 4 159 -19 27 49 0 0 chr12 14985953 14985994 -128800461 + AT_rich Low_complexity Low_complexity 1 41 0 3298 153 23 28 chr12 14986045 14986278 -128800177 - MER6A DNA MER2_type -260 605 372 2440 90 3 0 chr12 14986278 14986590 -128799865 + AluSp SINE Alu 1 313 0 3298 153 23 28 chr12 14986590 14986964 -128799491 - MER6A DNA MER2_type -493 372 1 23 68 0 0 chr12 14988857 14988901 -128797554 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 14988950 14988972 -128797483 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 61 20 0 chr12 14989016 14989065 -128797390 + (TG)n Simple_repeat Simple_repeat 1 50 0 391 190 0 38 chr12 14989956 14990035 -128796420 - MIR SINE MIR 0 262 187 217 341 23 23 chr12 14991042 14991130 -128795325 + MIR SINE MIR 4 91 -171 208 200 158 84 chr12 14991267 14991362 -128795093 + MIR SINE MIR 149 250 -12 254 306 157 39 chr12 14991734 14992071 -128794384 - L2 LINE L2 -964 2350 1974 1737 177 92 13 chr12 14992140 14992530 -128793925 - MSTB1 LTR MaLR 0 432 12 690 244 29 80 chr12 14995503 14995567 -128790888 - MIR SINE MIR 0 262 196 903 119 0 182 chr12 14995567 14995803 -128790652 - 7SK RNA RNA 0 193 1 690 244 29 80 chr12 14995803 14996013 -128790442 - MIR SINE MIR -66 196 2 305 229 42 10 chr12 14997543 14997639 -128788816 + L1MA9 LINE L1 6174 6272 -40 192 307 13 40 chr12 14997741 14997816 -128788639 - MIR SINE MIR -57 151 79 324 307 175 15 chr12 14997957 14998094 -128788361 + MIR3 SINE MIR 4 162 -46 455 324 88 0 chr12 14998607 14998777 -128787678 + MIR3 SINE MIR 20 204 -4 441 0 0 0 chr12 14998860 14998909 -128787546 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 214 170 71 chr12 14999429 14999541 -128786914 - MIR SINE MIR -71 191 69 651 222 12 12 chr12 14999996 15000158 -128786297 - MARNA DNA Mariner -62 524 363 384 213 25 31 chr12 15000229 15000389 -128786066 + CT-rich Low_complexity Low_complexity 2 160 0 207 281 126 37 chr12 15000710 15000845 -128785610 + L3 LINE CR1 1068 1214 -363 2315 163 70 9 chr12 15000941 15001371 -128785084 - LTR32 LTR ERVL -1 470 15 661 299 74 66 chr12 15001434 15001812 -128784643 + L3 LINE CR1 1193 1573 -4 535 291 11 28 chr12 15002775 15002954 -128783501 - MIR SINE MIR -10 252 77 1838 97 8 0 chr12 15002985 15003244 -128783211 - L1PA10 LINE L1 -3 6165 5905 23 0 0 0 chr12 15003254 15003277 -128783178 + AT_rich Low_complexity Low_complexity 1 23 0 648 267 141 0 chr12 15004098 15004289 -128782166 + MIR SINE MIR 35 252 -10 280 349 13 0 chr12 15004427 15004576 -128781879 - MER103 DNA DNA -14 152 2 1860 184 0 7 chr12 15004963 15005268 -128781187 - AluJo SINE Alu -9 303 1 241 284 60 35 chr12 15005790 15005906 -128780549 + L2 LINE L2 2623 2741 -573 286 268 54 18 chr12 15006283 15006395 -128780060 + L2 LINE L2 3196 3311 -2 364 298 57 8 chr12 15007063 15007187 -128779268 + MIR3 SINE MIR 70 199 -9 416 310 101 45 chr12 15007320 15007588 -128778867 + L2 LINE L2 3030 3312 -1 201 300 44 22 chr12 15008052 15008142 -128778313 + MIR SINE MIR 165 256 -6 194 217 72 96 chr12 15009620 15009703 -128776752 + L2 LINE L2 3174 3254 -18 849 275 73 31 chr12 15009932 15010259 -128776196 + L3b LINE CR1 1151 1491 -92 217 123 37 49 chr12 15010318 15010399 -128776056 + C-rich Low_complexity Low_complexity 3 82 0 192 231 0 19 chr12 15010443 15010495 -128775960 - L2 LINE L2 -1 3312 3262 456 293 37 30 chr12 15011485 15011785 -128774670 - L1ME4a LINE L1 -76 6045 5744 28 0 0 0 chr12 15012761 15012789 -128773666 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 37 52 chr12 15013686 15013820 -128772635 - MIR SINE MIR -67 141 9 224 200 0 55 chr12 15014062 15014117 -128772338 + GA-rich Low_complexity Low_complexity 2 53 0 447 35 0 0 chr12 15014154 15014211 -128772244 + (CA)n Simple_repeat Simple_repeat 1 57 0 212 217 0 29 chr12 15014619 15014688 -128771767 + A-rich Low_complexity Low_complexity 5 71 0 320 231 13 0 chr12 15014919 15014997 -128771458 - MER113 DNA MER1_type? -441 80 2 559 191 15 73 chr12 15015300 15015451 -128771004 + MIR SINE MIR 101 241 -21 705 188 109 0 chr12 15016221 15016349 -128770106 + MER5A DNA MER1_type 1 142 -47 666 240 6 44 chr12 15016640 15016823 -128769632 - L2 LINE L2 -1 3312 3137 753 263 140 47 chr12 15017406 15017706 -128768749 + MER102a DNA MER1_type 2 329 -1 224 262 84 65 chr12 15018881 15018988 -128767467 - L2 LINE L2 -1 3271 3163 590 244 111 70 chr12 15019050 15019321 -128767134 + MLT1E LTR MaLR 1 282 -260 657 202 69 35 chr12 15019329 15019502 -128766953 + MLT1E LTR MaLR 413 591 -2 201 274 153 53 chr12 15019827 15020017 -128766438 - L2 LINE L2 -556 2758 2550 368 227 78 26 chr12 15020944 15021098 -128765357 - L1ME4a LINE L1 -1 6120 5959 2262 91 3 7 chr12 15021126 15021422 -128765033 - AluSp SINE Alu -18 295 1 508 232 19 57 chr12 15022382 15022539 -128763916 + MIR3 SINE MIR 47 202 -6 245 242 11 84 chr12 15023192 15023287 -128763168 - L2 LINE L2 -3 3310 3223 647 248 33 33 chr12 15023569 15023779 -128762676 - MIR SINE MIR -30 232 23 418 336 168 23 chr12 15025692 15026425 -128760030 + L2 LINE L2 1946 2784 -530 379 258 28 107 chr12 15026771 15026949 -128759506 + L2 LINE L2 2896 3059 -213 237 299 28 102 chr12 15027094 15027271 -128759184 - L2 LINE L2 -213 3059 2896 276 282 126 0 chr12 15027295 15027398 -128759057 + L2 LINE L2 3197 3312 -1 422 296 42 42 chr12 15027414 15027556 -128758899 - MIR SINE MIR -70 192 51 524 257 68 99 chr12 15028400 15028723 -128757732 - L2 LINE L2 0 3313 3001 359 231 48 48 chr12 15029451 15029598 -128756857 - MIR3 SINE MIR -4 204 58 427 250 56 7 chr12 15029747 15029891 -128756564 - MER103 DNA DNA -10 156 6 536 315 81 5 chr12 15030137 15030359 -128756096 - MIR SINE MIR -18 244 6 205 336 71 44 chr12 15031000 15031113 -128755342 + L2 LINE L2 3147 3262 -10 186 320 0 40 chr12 15031942 15032017 -128754438 + MIR SINE MIR 34 105 -103 1524 249 40 49 chr12 15032090 15032516 -128753939 - MLT1E LTR MaLR 0 593 172 915 152 8 0 chr12 15032518 15032650 -128753805 + FLAM_C SINE Alu 1 133 0 348 161 0 0 chr12 15032662 15032724 -128753731 + GA-rich Low_complexity Low_complexity 3 64 0 297 197 49 0 chr12 15032724 15032785 -128753670 - MLT1E LTR MaLR -409 184 121 398 158 232 0 chr12 15032792 15032887 -128753568 - MLT1E LTR MaLR -433 160 44 17239 126 8 3 chr12 15033722 15036127 -128750328 + Tigger1 DNA MER2_type 1 2418 0 361 332 100 14 chr12 15036419 15036639 -128749816 + MIR SINE MIR 6 244 -18 369 256 66 16 chr12 15036876 15036997 -128749458 - MIR SINE MIR -65 143 17 2003 127 3 7 chr12 15037122 15037440 -128749015 - AluSx SINE Alu 0 317 1 486 373 18 9 chr12 15037636 15037853 -128748602 + L3 LINE CR1 606 824 -753 1883 139 29 4 chr12 15037973 15038246 -128748209 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr12 15038246 15038273 -128748182 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1120 161 0 0 chr12 15039072 15039240 -128747215 - FRAM SINE Alu -7 169 2 347 296 22 22 chr12 15039413 15039592 -128746863 + GA-rich Low_complexity Low_complexity 2 180 0 271 343 102 6 chr12 15039768 15039934 -128746521 + L3b LINE CR1 1107 1288 -295 277 257 168 18 chr12 15040178 15040291 -128746164 + MIR SINE MIR 20 149 -113 514 310 75 19 chr12 15042183 15042396 -128744059 + L2 LINE L2 2190 2414 -900 * 834 260 39 5 chr12 15042392 15042600 -128743855 - MIR SINE MIR -9 253 39 1611 281 91 12 chr12 15042632 15043479 -128742976 + L2 LINE L2 2380 3312 -1 1483 246 73 26 chr12 15044619 15045045 -128741410 + MLT1J1 LTR MaLR 1 446 0 243 373 59 25 chr12 15045075 15045193 -128741262 + L2 LINE L2 3132 3253 -19 637 216 167 0 chr12 15045971 15046133 -128740322 - MER5A DNA MER1_type 0 189 1 376 230 296 7 chr12 15046413 15046548 -128739907 - MER5B DNA MER1_type -2 176 3 384 323 24 16 chr12 15047607 15047734 -128738721 + MIR SINE MIR 7 134 -128 1688 154 74 40 chr12 15048172 15048523 -128737932 + THE1C LTR MaLR 1 363 -12 567 257 120 68 chr12 15048523 15048932 -128737523 - MLT1H LTR MaLR -13 536 107 326 276 41 24 chr12 15049002 15049125 -128737330 + MIR SINE MIR 138 262 0 395 332 46 98 chr12 15049188 15049667 -128736788 - L2 LINE L2 -2 3270 2817 202 307 172 17 chr12 15049704 15049942 -128736513 - L2 LINE L2 -440 2874 2600 377 240 0 0 chr12 15051285 15051360 -128735095 + MIR SINE MIR 4 78 -184 342 287 61 0 chr12 15051859 15051974 -128734481 - MIR SINE MIR -12 250 129 267 254 16 0 chr12 15051986 15052049 -128734406 - MLT1K LTR MaLR -3 585 522 201 121 0 0 chr12 15052508 15052541 -128733914 + (G)n Simple_repeat Simple_repeat 1 33 0 326 311 19 28 chr12 15052612 15052718 -128733737 - MIR SINE MIR -148 114 10 272 169 0 108 chr12 15053833 15053898 -128732557 - MIR SINE MIR -133 129 72 548 293 82 33 chr12 15055571 15056050 -128730405 + L1ME3A LINE L1 5158 5656 -751 248 267 47 12 chr12 15056083 15056169 -128730286 + L1ME3A LINE L1 5730 5818 -303 2155 168 36 36 chr12 15056395 15056787 -128729668 + MSTD LTR MaLR 1 392 -4 264 30 0 0 chr12 15057705 15057738 -128728717 + (A)n Simple_repeat Simple_repeat 1 33 0 213 213 131 0 chr12 15058632 15058693 -128727762 - MIR3 SINE MIR -28 180 112 213 315 0 0 chr12 15058663 15058736 -128727719 - MIR SINE MIR -122 140 68 517 242 72 41 chr12 15058836 15059030 -128727425 + MER63A DNA MER1_type 1 200 -10 488 269 185 23 chr12 15059458 15059674 -128726781 + MIR SINE MIR 2 252 -10 242 286 0 14 chr12 15059686 15059756 -128726699 + L2 LINE L2 3203 3271 -1 713 327 92 53 chr12 15059898 15060559 -128725896 - L3 LINE CR1 -497 1080 320 223 350 109 42 chr12 15060630 15060941 -128725514 - L2 LINE L2 -491 2823 2492 310 305 130 0 chr12 15062346 15062477 -128723978 + L2 LINE L2 3123 3270 -2 766 234 62 4 chr12 15063239 15063465 -128722990 + L1ME3A LINE L1 5931 6169 -1 397 352 28 22 chr12 15064449 15064631 -128721824 + MIR3 SINE MIR 19 201 -7 300 322 125 7 chr12 15064952 15065104 -128721351 + MIR3 SINE MIR 19 188 -20 201 94 0 0 chr12 15065297 15065329 -128721126 + (T)n Simple_repeat Simple_repeat 1 32 0 510 286 136 28 chr12 15065533 15065746 -128720709 - MIR SINE MIR -6 256 21 282 323 126 0 chr12 15065811 15065978 -128720477 + MIR SINE MIR 2 189 -73 214 357 32 38 chr12 15066472 15066629 -128719826 + L3 LINE CR1 938 1093 -484 332 309 65 16 chr12 15068436 15068559 -128717896 - MER5B DNA MER1_type -4 174 46 303 210 12 25 chr12 15068590 15068671 -128717784 + MER5B DNA MER1_type 60 139 -39 2649 47 0 0 chr12 15069554 15069854 -128716601 - AluY SINE Alu -11 300 1 573 52 102 0 chr12 15071862 15072194 -128714261 + (TA)n Simple_repeat Simple_repeat 1 365 0 2320 139 37 51 chr12 15072748 15073180 -128713275 + MSTB1 LTR MaLR 3 428 -4 288 0 0 0 chr12 15073761 15073793 -128712662 + (TG)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chr12 15073794 15073825 -128712630 + (GA)n Simple_repeat Simple_repeat 2 32 0 221 365 10 19 chr12 15073961 15074065 -128712390 + L2 LINE L2 2953 3055 -217 420 312 16 8 chr12 15075404 15075529 -128710926 - MIR SINE MIR -108 154 29 235 261 0 14 chr12 15075672 15075741 -128710714 + (TTA)n Simple_repeat Simple_repeat 3 70 0 294 271 209 0 chr12 15075770 15075899 -128710556 - MIR SINE MIR -14 248 93 1106 210 98 88 chr12 15077738 15078195 -128708260 + MLT1C LTR MaLR 6 467 0 237 65 0 0 chr12 15078827 15078858 -128707597 + (CA)n Simple_repeat Simple_repeat 2 32 0 201 147 0 0 chr12 15079120 15079154 -128707301 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 4396 93 30 3 chr12 15081523 15082146 -128704309 - MER51C LTR ERV1 0 640 1 453 283 81 0 chr12 15082171 15082344 -128704111 - MIR SINE MIR -74 188 2 7223 53 29 1 chr12 15084661 15086265 -128700190 - L1PA7 LINE L1 0 6154 4525 1567 195 20 63 chr12 15086768 15087163 -128699292 - MER83B LTR ERV1 0 378 1 296 360 54 14 chr12 15087206 15087353 -128699102 + L2 LINE L2 3102 3254 -18 202 298 140 18 chr12 15087712 15087826 -128698629 - MIR SINE MIR -48 214 87 * 611 233 35 6 chr12 15087803 15087975 -128698480 + MIR SINE MIR 79 255 -7 4263 64 4 20 chr12 15088564 15089124 -128697331 + L1PA8 LINE L1 5622 6172 0 522 168 10 0 chr12 15090206 15090307 -128696148 + MER53 DNA DNA 8 109 -80 477 30 0 242 chr12 15091367 15091466 -128694989 + MADE1 DNA Mariner 3 77 -3 2043 152 10 0 chr12 15091691 15092026 -128694429 + AluJb SINE Alu 1 338 0 437 247 48 24 chr12 15092238 15092404 -128694051 + L2 LINE L2 3144 3313 0 189 184 26 0 chr12 15093155 15093193 -128693262 + L2 LINE L2 3228 3266 -6 326 229 90 16 chr12 15093688 15093810 -128692645 + MER103 DNA DNA 4 134 -32 186 118 0 0 chr12 15094898 15094932 -128691523 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 423 250 38 30 chr12 15094932 15095064 -128691391 - L2 LINE L2 -23 3290 3158 333 215 141 7 chr12 15095078 15095227 -128691228 - L2 LINE L2 -310 3003 2835 630 226 102 0 chr12 15095883 15096060 -128690395 + MIR SINE MIR 47 241 -21 277 355 11 21 chr12 15097302 15097395 -128689060 - MIR SINE MIR -152 110 19 2246 134 0 0 chr12 15097419 15097718 -128688737 - AluSx SINE Alu -13 299 1 2021 217 69 11 chr12 15098148 15098614 -128687841 + L1ME1 LINE L1 5612 6104 -62 249 180 0 0 chr12 15099737 15099787 -128686668 + (ATG)n Simple_repeat Simple_repeat 2 51 0 838 251 57 16 chr12 15099790 15100037 -128686418 - MIR SINE MIR 0 262 6 544 300 33 33 chr12 15100386 15100629 -128685826 + L2 LINE L2 2907 3149 -164 2189 214 57 9 chr12 15100635 15101162 -128685293 - MLT1H1 LTR MaLR 0 555 4 420 253 0 0 chr12 15101165 15101252 -128685203 + FLAM SINE Alu 40 126 -17 233 295 74 25 chr12 15101290 15101412 -128685043 + L2 LINE L2 3179 3306 -7 238 206 0 32 chr12 15101417 15101480 -128684975 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 286 281 74 30 chr12 15101480 15101615 -128684840 + L2 LINE L2 3173 3313 0 218 298 58 19 chr12 15102262 15102366 -128684089 + MIR SINE MIR 38 145 -117 1911 170 0 19 chr12 15102493 15102811 -128683644 + AluSx SINE Alu 1 312 0 21 36 0 0 chr12 15102894 15102922 -128683533 + AT_rich Low_complexity Low_complexity 1 28 0 251 345 3 6 chr12 15103507 15103617 -128682838 - MIR SINE MIR -87 121 13 2004 146 0 7 chr12 15103631 15103969 -128682486 - AluJb SINE Alu 0 312 1 1995 218 91 11 chr12 15104058 15104594 -128681861 - L1M4 LINE L1 -912 5234 4656 28 29 0 0 chr12 15104645 15104680 -128681775 + AT_rich Low_complexity Low_complexity 1 35 0 318 341 61 12 chr12 15105131 15105295 -128681160 + MIR3 SINE MIR 12 183 -25 750 258 21 42 chr12 15105840 15105886 -128680569 - MIR SINE MIR -10 252 207 2382 72 0 0 chr12 15105886 15106176 -128680279 - AluY SINE Alu -21 290 1 750 258 21 42 chr12 15106176 15106369 -128680086 - MIR SINE MIR -55 207 18 237 167 0 0 chr12 15107324 15107378 -128679077 + CT-rich Low_complexity Low_complexity 1 54 0 2373 185 12 51 chr12 15109656 15110142 -128676313 - MLT1C LTR MaLR 0 467 1 292 343 29 0 chr12 15111938 15112078 -128674377 + CT-rich Low_complexity Low_complexity 1 144 0 368 324 195 18 chr12 15123772 15124756 -128661699 + L2 LINE L2 1597 2754 -560 253 386 33 26 chr12 15125080 15125233 -128661222 + L2 LINE L2 3105 3258 -14 21 0 0 0 chr12 15125233 15125254 -128661201 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr12 15129627 15129658 -128656797 + AT_rich Low_complexity Low_complexity 1 31 0 592 313 39 10 chr12 15131336 15131544 -128654911 - MIR SINE MIR -3 259 46 306 250 36 79 chr12 15131948 15132088 -128654367 - HAL1b LINE L1 -22 1326 1193 21 0 0 0 chr12 15132274 15132295 -128654160 + AT_rich Low_complexity Low_complexity 1 21 0 849 363 100 26 chr12 15132515 15133394 -128653061 + L2 LINE L2 2030 2973 -341 203 323 71 10 chr12 15133606 15133705 -128652750 + L2 LINE L2 3177 3281 -32 936 128 43 32 chr12 15135495 15135682 -128650773 - MER53 DNA DNA 0 189 1 252 338 0 0 chr12 15137331 15137408 -128649047 + CT-rich Low_complexity Low_complexity 2 78 0 2418 152 49 2 chr12 15137440 15137848 -128648607 - MSTB1 LTR MaLR -5 427 1 646 209 121 70 chr12 15138293 15138566 -128647889 + L2 LINE L2 3022 3308 -5 302 283 38 94 chr12 15138752 15138964 -128647491 - MIR3 SINE MIR -6 202 3 915 259 92 45 chr12 15141409 15141745 -128644710 - MLT1J LTR MaLR -102 409 58 2181 134 0 0 chr12 15141745 15142044 -128644411 + AluSx SINE Alu 1 299 -13 1606 163 53 23 chr12 15142631 15142932 -128643523 + AluJb SINE Alu 3 312 0 2040 83 41 8 chr12 15143148 15143414 -128643041 + AluSg1 SINE Alu 3 277 -32 189 0 0 0 chr12 15143416 15143437 -128643018 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 194 191 88 73 chr12 15144353 15144421 -128642034 + L3 LINE CR1 374 442 -1135 2384 82 23 0 chr12 15145073 15145377 -128641078 - AluSp SINE Alu -2 311 1 490 266 0 73 chr12 15145523 15145715 -128640740 - MER5B DNA MER1_type 0 178 1 2362 97 0 0 chr12 15146965 15147265 -128639190 + AluY SINE Alu 1 300 -11 2198 95 0 33 chr12 15147417 15147722 -128638733 - AluSq SINE Alu -2 311 17 374 335 69 35 chr12 15149538 15149741 -128636714 + L2 LINE L2 2890 3099 -173 435 243 16 68 chr12 15150460 15150596 -128635859 + MIR SINE MIR 1 144 -64 182 341 23 34 chr12 15150595 15150683 -128635772 + L3 LINE CR1 1488 1574 -3 * 356 336 24 28 chr12 15151236 15151447 -128635008 + L2 LINE L2 2338 2547 -767 485 311 15 0 chr12 15151469 15151604 -128634851 + L2 LINE L2 3136 3272 0 180 343 29 14 chr12 15152253 15152323 -128634132 + MIR SINE MIR 83 153 -55 2122 87 0 8 chr12 15152845 15153142 -128633313 - AluY SINE Alu 0 311 17 437 308 47 6 chr12 15153907 15154076 -128632379 + MIR SINE MIR 58 233 -29 24 0 0 0 chr12 15154470 15154494 -128631961 + AT_rich Low_complexity Low_complexity 1 24 0 216 111 0 0 chr12 15155716 15155752 -128630703 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 316 241 155 43 chr12 15156316 15156432 -128630023 - L2 LINE L2 0 3272 3144 411 352 90 7 chr12 15157185 15157330 -128629125 + MIR3 SINE MIR 16 172 -36 * 416 221 24 144 chr12 15157327 15157535 -128628920 + MIR SINE MIR 16 198 -64 2070 75 11 4 chr12 15157540 15157805 -128628650 + L1PB1 LINE L1 5884 6150 -1 275 65 22 0 chr12 15157882 15157928 -128628527 + (TA)n Simple_repeat Simple_repeat 1 47 0 2210 112 10 0 chr12 15157928 15158222 -128628233 - AluSq SINE Alu -15 298 2 28 0 0 0 chr12 15158222 15158250 -128628205 + AT_rich Low_complexity Low_complexity 1 28 0 259 219 37 24 chr12 15159122 15159204 -128627251 + CT-rich Low_complexity Low_complexity 3 85 0 336 331 19 0 chr12 15159664 15159818 -128626637 - LTR16C LTR ERVL -49 442 286 274 364 7 20 chr12 15160925 15161076 -128625379 - LTR16C LTR ERVL 0 491 343 1471 25 0 0 chr12 15161176 15161336 -128625119 + L1PA7 LINE L1 5995 6154 0 2484 318 126 41 chr12 15161690 15163646 -128622809 + L2 LINE L2 1178 3308 -5 282 218 18 0 chr12 15166873 15166928 -128619527 - L2 LINE L2 -6 3266 3211 280 298 74 88 chr12 15167207 15167373 -128619082 + MIR SINE MIR 30 194 -68 324 0 0 0 chr12 15167373 15167409 -128619046 + (CA)n Simple_repeat Simple_repeat 2 37 0 280 298 74 88 chr12 15167409 15167457 -128618998 + MIR SINE MIR 194 241 -21 216 228 18 0 chr12 15167836 15167893 -128618562 + CT-rich Low_complexity Low_complexity 3 60 0 209 379 24 40 chr12 15168242 15168366 -128618089 - L2 LINE L2 -3 3269 3148 295 271 0 0 chr12 15168886 15168956 -128617499 + (TTCA)n Simple_repeat Simple_repeat 1 70 0 228 212 15 30 chr12 15169335 15169401 -128617054 + (CAT)n Simple_repeat Simple_repeat 1 65 0 496 224 0 42 chr12 15169598 15169741 -128616714 + L1PB4 LINE L1 6020 6156 0 2078 189 25 96 chr12 15171845 15172086 -128614369 - L1ME2 LINE L1 -44 6120 5863 11809 33 2 1 chr12 15172086 15174269 -128612186 - L1PA4 LINE L1 -3 6152 3968 2078 189 25 96 chr12 15174269 15174671 -128611784 - L1ME2 LINE L1 -301 5863 5523 288 234 11 53 chr12 15174768 15174862 -128611593 - LTR50 LTR ERVL -217 578 489 1160 230 61 18 chr12 15174870 15175262 -128611193 - L1MDa LINE L1 -5123 1417 1009 225 331 15 15 chr12 15175306 15175436 -128611019 - L1MDa LINE L1 -5935 595 466 433 211 88 88 chr12 15175510 15175657 -128610798 + L2 LINE L2 3166 3312 -1 213 227 288 38 chr12 15175731 15175863 -128610592 + MIR SINE MIR 84 248 -14 243 200 75 50 chr12 15176119 15176199 -128610256 + MIR SINE MIR 100 181 -81 204 355 0 16 chr12 15177756 15177818 -128608637 - L2 LINE L2 -207 3065 3005 765 322 70 23 chr12 15178354 15178739 -128607716 - L3b LINE CR1 -78 1505 1103 195 254 36 18 chr12 15179304 15179359 -128607096 - L2 LINE L2 -16 3256 3201 425 235 22 44 chr12 15179643 15179779 -128606676 - MIR SINE MIR 0 262 130 302 252 148 0 chr12 15180732 15180867 -128605588 + L1ME LINE L1 5672 5826 -295 468 285 32 19 chr12 15181404 15181562 -128604893 - MER91B DNA MER1_type -12 178 19 245 344 16 62 chr12 15182897 15183025 -128603430 + L2 LINE L2 3147 3268 -4 1868 153 18 49 chr12 15183187 15183574 -128602881 + THE1C LTR MaLR 1 375 0 705 302 133 7 chr12 15183631 15183932 -128602523 - MLT1G1 LTR MaLR -2 593 255 415 221 14 114 chr12 15183944 15184084 -128602371 - MLT1G1 LTR MaLR -421 134 9 2189 113 3 3 chr12 15184590 15184883 -128601572 + AluSg SINE Alu 1 293 -17 2179 112 0 0 chr12 15185494 15185789 -128600666 + AluSx SINE Alu 1 295 -17 423 0 0 0 chr12 15189773 15189820 -128596635 + (TA)n Simple_repeat Simple_repeat 1 47 0 415 245 64 28 chr12 15189858 15190001 -128596454 + MIR3 SINE MIR 12 162 -46 246 233 83 0 chr12 15190060 15190120 -128596335 + L2 LINE L2 3244 3308 -5 242 293 121 7 chr12 15190754 15190894 -128595561 + MER5B DNA MER1_type 4 159 -19 27 49 0 0 chr12 15191084 15191125 -128595330 + AT_rich Low_complexity Low_complexity 1 41 0 3298 153 23 28 chr12 15191176 15191409 -128595046 - MER6A DNA MER2_type -260 605 372 2440 90 3 0 chr12 15191409 15191721 -128594734 + AluSp SINE Alu 1 313 0 3298 153 23 28 chr12 15191721 15192095 -128594360 - MER6A DNA MER2_type -493 372 1 23 68 0 0 chr12 15193988 15194032 -128592423 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 15194081 15194103 -128592352 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 61 20 0 chr12 15194147 15194196 -128592259 + (TG)n Simple_repeat Simple_repeat 1 50 0 391 190 0 38 chr12 15195087 15195166 -128591289 - MIR SINE MIR 0 262 187 217 341 23 23 chr12 15196173 15196261 -128590194 + MIR SINE MIR 4 91 -171 208 200 158 84 chr12 15196398 15196493 -128589962 + MIR SINE MIR 149 250 -12 254 306 157 39 chr12 15196865 15197202 -128589253 - L2 LINE L2 -964 2350 1974 1737 177 92 13 chr12 15197271 15197661 -128588794 - MSTB1 LTR MaLR 0 432 12 690 244 29 80 chr12 15200634 15200698 -128585757 - MIR SINE MIR 0 262 196 903 119 0 182 chr12 15200698 15200934 -128585521 - 7SK RNA RNA 0 193 1 690 244 29 80 chr12 15200934 15201144 -128585311 - MIR SINE MIR -66 196 2 305 229 42 10 chr12 15202674 15202770 -128583685 + L1MA9 LINE L1 6174 6272 -40 192 307 13 40 chr12 15202872 15202947 -128583508 - MIR SINE MIR -57 151 79 324 307 175 15 chr12 15203088 15203225 -128583230 + MIR3 SINE MIR 4 162 -46 455 324 88 0 chr12 15203738 15203908 -128582547 + MIR3 SINE MIR 20 204 -4 441 0 0 0 chr12 15203991 15204040 -128582415 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 214 170 71 chr12 15204560 15204672 -128581783 - MIR SINE MIR -71 191 69 651 222 12 12 chr12 15205127 15205289 -128581166 - MARNA DNA Mariner -62 524 363 384 213 25 31 chr12 15205360 15205520 -128580935 + CT-rich Low_complexity Low_complexity 2 160 0 225 0 0 0 chr12 15205731 15205756 -128580699 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2650 55 0 3 chr12 15206241 15206553 -128579902 + AluY SINE Alu 1 311 0 190 369 9 7 chr12 15206569 15206682 -128579773 + L2 LINE L2 3115 3301 -12 1764 209 52 66 chr12 15206791 15207307 -128579148 + MLT1H LTR MaLR 41 549 0 208 346 74 56 chr12 15207535 15207873 -128578582 + L2 LINE L2 2627 2970 -344 421 243 54 127 chr12 15207953 15208212 -128578243 - MIR SINE MIR 0 262 23 298 274 44 53 chr12 15208257 15208370 -128578085 - MIR SINE MIR -81 127 16 233 297 59 20 chr12 15210775 15210876 -128575579 - MIR3 SINE MIR -6 202 98 390 316 23 18 chr12 15211864 15212035 -128574420 + MIR SINE MIR 91 262 0 2308 51 44 7 chr12 15213481 15213775 -128572680 + AluY SINE Alu 1 305 -6 1651 211 52 0 chr12 15213986 15214394 -128572061 - L1MA4 LINE L1 -5 6295 5867 2009 113 0 52 chr12 15215424 15215733 -128570722 + AluSg SINE Alu 1 293 -17 1696 157 44 63 chr12 15216219 15216601 -128569854 + AluJb SINE Alu 1 376 0 361 291 38 51 chr12 15217746 15217846 -128568609 + MIR SINE MIR 103 202 -60 4276 66 2 0 chr12 15217846 15218394 -128568061 + L1PA6 LINE L1 5606 6154 0 361 291 38 51 chr12 15218394 15218451 -128568004 + MIR SINE MIR 202 258 -4 533 296 62 6 chr12 15219043 15219205 -128567250 - MIR3 SINE MIR -24 184 14 2126 136 48 11 chr12 15219345 15219697 -128566758 - MLT1A1 LTR MaLR 0 365 1 187 331 48 48 chr12 15220251 15220375 -128566080 + MER5A DNA MER1_type 43 166 -23 * 380 257 14 0 chr12 15220326 15220400 -128566055 - MER5A DNA MER1_type -105 84 10 284 344 62 20 chr12 15220685 15220880 -128565575 + MIR SINE MIR 59 261 -1 220 316 26 13 chr12 15222717 15222793 -128563662 - L3 LINE CR1 -402 1175 1099 221 338 120 23 chr12 15224293 15224426 -128562029 - L2 LINE L2 0 3313 3168 482 347 11 4 chr12 15224630 15224892 -128561563 + L1ME LINE L1 5509 5772 -349 21 36 0 0 chr12 15224969 15224997 -128561458 + AT_rich Low_complexity Low_complexity 1 28 0 2622 135 7 27 chr12 15225190 15225633 -128560822 + Tigger2a DNA MER2_type 1 434 0 383 319 212 8 chr12 15226895 15227136 -128559319 + L2 LINE L2 3021 3310 -3 269 293 20 50 chr12 15227456 15227555 -128558900 - MIR SINE MIR -93 169 74 5748 139 23 6 chr12 15227897 15229209 -128557246 - L1MA8 LINE L1 0 6291 4960 220 324 0 0 chr12 15229486 15229557 -128556898 + MIR3 SINE MIR 138 208 0 234 0 0 0 chr12 15230009 15230035 -128556420 + (T)n Simple_repeat Simple_repeat 1 26 0 579 15 0 0 chr12 15230751 15230818 -128555637 - L1PA5 LINE L1 -264 5891 5825 1898 51 0 0 chr12 15230818 15231052 -128555403 + L1PA5 LINE L1 5917 6150 -4 204 40 0 0 chr12 15231052 15231077 -128555378 + (TA)n Simple_repeat Simple_repeat 1 25 0 794 198 171 0 chr12 15231311 15231498 -128554957 - MER20 DNA MER1_type 0 219 1 314 322 101 35 chr12 15231597 15231824 -128554631 + MIR SINE MIR 20 261 -1 361 308 148 38 chr12 15232038 15232503 -128553952 + L2 LINE L2 2607 3135 -178 979 119 0 0 chr12 15232519 15232653 -128553802 - AluSg/x SINE Alu -16 296 163 284 274 169 8 chr12 15232676 15232800 -128553655 + L2 LINE L2 3167 3310 -3 231 343 57 29 chr12 15232947 15233052 -128553403 + L2 LINE L2 3125 3232 -40 1428 176 13 83 chr12 15233576 15233878 -128552577 + AluJo SINE Alu 1 281 -31 2218 89 13 20 chr12 15235230 15235534 -128550921 - AluSg SINE Alu -8 302 1 358 254 246 0 chr12 15235827 15235969 -128550486 - MIR SINE MIR 0 262 86 1092 169 9 28 chr12 15236943 15237156 -128549299 + MER3 DNA MER1_type 1 209 0 251 200 31 15 chr12 15237327 15237392 -128549063 - MER116 DNA Mariner -12 68 3 202 224 20 0 chr12 15237469 15237518 -128548937 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 1823 168 33 48 chr12 15241272 15241666 -128544789 + MLT1B LTR MaLR 3 390 0 809 273 3 72 chr12 15241789 15242137 -128544318 - MER46C DNA MER2_type -14 324 1 381 276 48 0 chr12 15242674 15242779 -128543676 - L2 LINE L2 -4 3309 3200 246 331 121 16 chr12 15242862 15242986 -128543469 + L2 LINE L2 3136 3272 0 427 322 64 75 chr12 15243064 15243587 -128542868 + L2 LINE L2 2563 3089 -183 219 287 46 58 chr12 15243988 15244075 -128542380 - L2 LINE L2 -39 3233 3148 6471 241 55 24 chr12 15245176 15246872 -128539583 - L1MEc LINE L1 -1182 5033 3248 2536 65 0 10 chr12 15246872 15247178 -128539277 + AluSg SINE Alu 1 303 -7 6471 241 55 24 chr12 15247178 15247749 -128538706 - L1MEc LINE L1 -2967 3248 2696 238 26 51 0 chr12 15247755 15247794 -128538661 + (TA)n Simple_repeat Simple_repeat 2 42 0 339 25 0 0 chr12 15247796 15247836 -128538619 + (TG)n Simple_repeat Simple_repeat 1 40 0 2079 114 0 0 chr12 15247836 15248116 -128538339 - AluSq SINE Alu -33 280 1 1400 253 91 112 chr12 15248122 15248488 -128537967 - L1MEc LINE L1 -4009 2387 2015 2244 108 7 0 chr12 15248488 15248783 -128537672 + AluSp SINE Alu 1 297 -16 1400 253 91 112 chr12 15248783 15249999 -128536456 - L1MEc LINE L1 -4381 2015 868 2154 104 0 0 chr12 15249999 15250279 -128536176 - AluSg SINE Alu -30 280 1 1400 253 91 112 chr12 15250279 15251095 -128535360 - L1MEc LINE L1 -5528 868 37 780 297 99 37 chr12 15251120 15251689 -128534766 + L2 LINE L2 2709 3305 -8 2295 136 64 33 chr12 15253191 15253610 -128532845 + MSTB1 LTR MaLR 1 432 0 470 250 83 0 chr12 15254762 15254870 -128531585 + L2 LINE L2 3146 3262 -10 744 251 116 13 chr12 15254871 15255250 -128531205 - L1ME4a LINE L1 -219 5902 5485 290 243 63 36 chr12 15256034 15256145 -128530310 - MIR SINE MIR -62 146 33 2338 85 0 22 chr12 15256320 15256636 -128529819 - AluY SINE Alu -2 309 1 812 214 17 17 chr12 15257094 15257272 -128529183 + MER5B DNA MER1_type 1 178 0 231 36 0 0 chr12 15258071 15258099 -128528356 + (A)n Simple_repeat Simple_repeat 1 28 0 341 242 150 17 chr12 15259859 15259979 -128526476 - MIR SINE MIR -112 150 15 379 260 4 13 chr12 15261862 15261971 -128524484 - MIR SINE MIR -61 147 44 454 280 48 0 chr12 15262731 15262856 -128523599 + MIR SINE MIR 45 175 -87 401 290 66 2 chr12 15263483 15263620 -128522835 - MIR SINE MIR -63 145 3 198 217 188 14 chr12 15265085 15265154 -128521301 + MIR SINE MIR 175 255 -7 231 36 0 0 chr12 15265211 15265239 -128521216 + (T)n Simple_repeat Simple_repeat 1 28 0 289 92 0 197 chr12 15265293 15265326 -128521129 - L1PA10 LINE L1 0 6168 6157 260 27 27 0 chr12 15265326 15265363 -128521092 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 289 92 0 197 chr12 15265363 15265405 -128521050 - L1PA10 LINE L1 -11 6157 6108 230 93 0 23 chr12 15265520 15265563 -128520892 + (CA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr12 15265680 15265718 -128520737 + AT_rich Low_complexity Low_complexity 1 38 0 292 342 32 0 chr12 15266913 15267043 -128519412 + MIR SINE MIR 25 123 -85 561 224 35 0 chr12 15267882 15267998 -128518457 + MIR3 SINE MIR 85 204 -4 401 292 66 51 chr12 15268380 15268517 -128517938 - MIR3 SINE MIR -55 153 15 23 0 0 0 chr12 15268632 15268655 -128517800 + AT_rich Low_complexity Low_complexity 1 23 0 390 290 69 8 chr12 15269295 15269426 -128517029 - MIR SINE MIR -105 157 19 21 0 0 0 chr12 15269505 15269526 -128516929 + AT_rich Low_complexity Low_complexity 1 21 0 218 354 7 14 chr12 15269911 15270058 -128516397 + GA-rich Low_complexity Low_complexity 2 147 0 385 280 80 40 chr12 15273084 15273284 -128513171 + MIR SINE MIR 3 210 -52 245 374 0 11 chr12 15273801 15273892 -128512563 + MER5B DNA MER1_type 37 126 -52 301 303 82 62 chr12 15274871 15275115 -128511340 - MIR SINE MIR -12 250 2 796 278 155 30 chr12 15275232 15275631 -128510824 + L2 LINE L2 2863 3311 -2 466 308 31 15 chr12 15276154 15276284 -128510171 - L2 LINE L2 0 3272 3141 2000 157 0 0 chr12 15276530 15276836 -128509619 + AluSg SINE Alu 2 307 -3 1973 142 6 25 chr12 15277228 15277546 -128508909 + AluSx SINE Alu 1 312 0 523 250 37 15 chr12 15277575 15277711 -128508744 - MIR SINE MIR -107 155 17 1060 215 122 42 chr12 15277720 15278148 -128508307 - MLT1C LTR MaLR 0 467 6 365 346 112 32 chr12 15278211 15278755 -128507700 - L2 LINE L2 -35 3237 2643 525 324 21 28 chr12 15278933 15279220 -128507235 + L2 LINE L2 2034 2318 -996 261 287 99 39 chr12 15279369 15279550 -128506905 - L2 LINE L2 -1458 1856 1665 300 70 0 0 chr12 15279669 15279712 -128506743 + (CA)n Simple_repeat Simple_repeat 1 43 0 320 333 33 0 chr12 15280384 15280504 -128505951 + MIR SINE MIR 91 214 -48 384 363 144 0 chr12 15281327 15281528 -128504927 - MIR SINE MIR -12 250 21 447 320 26 13 chr12 15281949 15282102 -128504353 + MIR SINE MIR 34 188 -74 2157 119 16 0 chr12 15282620 15282923 -128503532 - AluSx SINE Alu -4 308 1 275 337 35 13 chr12 15283515 15283633 -128502822 + MIR SINE MIR 2 119 -89 436 287 94 17 chr12 15284218 15284399 -128502056 - MIR SINE MIR -50 212 18 183 42 0 0 chr12 15284964 15284988 -128501467 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 757 280 37 18 chr12 15285730 15285948 -128500507 + MIR SINE MIR 21 242 -20 839 148 94 0 chr12 15287093 15287242 -128499213 + MER5B DNA MER1_type 1 163 -15 2237 117 0 0 chr12 15287655 15287955 -128498500 + AluSq SINE Alu 7 306 -7 270 287 62 84 chr12 15289128 15289326 -128497129 - MIR SINE MIR -54 208 23 571 157 0 26 chr12 15289747 15289862 -128496593 + L1PB4 LINE L1 6043 6154 -2 374 356 38 6 chr12 15289866 15290026 -128496429 - MIR SINE MIR -12 250 86 225 0 0 0 chr12 15290755 15290780 -128495675 + (CA)n Simple_repeat Simple_repeat 2 26 0 297 75 0 0 chr12 15291518 15291558 -128494897 + (T)n Simple_repeat Simple_repeat 1 40 0 381 103 147 0 chr12 15291741 15291809 -128494646 + MER116 DNA Mariner 1 78 -2 511 286 120 26 chr12 15291814 15292006 -128494449 - MIR SINE MIR -33 229 20 231 36 0 0 chr12 15292040 15292068 -128494387 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 314 233 111 89 chr12 15292080 15292260 -128494195 + MIR SINE MIR 37 220 -42 269 269 0 43 chr12 15293143 15293236 -128493219 + L1ME LINE L1 5507 5595 -526 369 271 113 40 chr12 15293238 15293415 -128493040 + L1 LINE L1 2338 2527 -3619 282 264 42 42 chr12 15293700 15293893 -128492562 + L1 LINE L1 2879 3071 -3075 1272 122 0 6 chr12 15294518 15294770 -128491685 + AluSc SINE Alu 1 295 -14 334 236 21 24 chr12 15294798 15294957 -128491498 + L1 LINE L1 3773 3927 -2219 417 311 92 12 chr12 15295086 15295337 -128491118 + L1 LINE L1 4411 4681 -1465 22 35 0 0 chr12 15295424 15295453 -128491002 + AT_rich Low_complexity Low_complexity 1 29 0 1168 111 5 15 chr12 15297262 15297460 -128488995 - L1PA11 LINE L1 -60 6114 5919 574 40 0 0 chr12 15297460 15297532 -128488923 + L1PA11 LINE L1 6100 6173 -1 2334 87 0 10 chr12 15297543 15297852 -128488603 + AluSc SINE Alu 1 306 -3 255 322 116 10 chr12 15297990 15298151 -128488304 + MIR SINE MIR 20 203 -59 * 270 308 68 38 chr12 15298134 15298267 -128488188 - L2 LINE L2 -4 3309 3173 451 282 72 36 chr12 15298444 15298639 -128487816 + MIR SINE MIR 21 222 -40 335 253 81 50 chr12 15299100 15299199 -128487256 + L2 LINE L2 3171 3272 0 310 313 263 19 chr12 15299887 15300047 -128486408 + MIR3 SINE MIR 3 201 -7 1013 287 39 48 chr12 15300049 15300080 -128486375 + LTR33 LTR ERVL 12 42 -479 2304 107 0 3 chr12 15300080 15300388 -128486067 + AluSx SINE Alu 1 307 -5 1013 287 39 48 chr12 15300388 15300871 -128485584 + LTR33 LTR ERVL 42 521 0 1749 164 7 0 chr12 15301404 15301702 -128484753 - MER7A DNA MER2_type 0 346 49 192 77 0 0 chr12 15303294 15303320 -128483135 + (TG)n Simple_repeat Simple_repeat 1 26 0 358 271 53 30 chr12 15304807 15304940 -128481515 + MIR SINE MIR 81 216 -46 2745 213 85 49 chr12 15305062 15306645 -128479810 - L1ME1 LINE L1 -5 6161 4535 1280 223 101 15 chr12 15306647 15307104 -128479351 - L1ME1 LINE L1 -1709 4437 3942 414 366 27 11 chr12 15308149 15308335 -128478120 + MER5A DNA MER1_type 1 189 0 1011 235 24 36 chr12 15309144 15309395 -128477060 - MIR SINE MIR -10 252 5 3261 133 75 82 chr12 15310454 15310751 -128475704 - Tigger3(Golem) DNA MER2_type 0 3028 2731 2221 114 0 0 chr12 15310751 15311048 -128475407 + AluSx SINE Alu 1 297 -15 3261 133 75 82 chr12 15311048 15311507 -128474948 - Tigger3(Golem) DNA MER2_type -297 2731 2277 567 119 0 136 chr12 15311495 15311613 -128474842 - Tigger3(Golem) DNA MER2_type -2918 111 10 * 273 264 126 44 chr12 15311767 15311926 -128474529 - MIR SINE MIR -21 241 70 207 171 0 0 chr12 15314065 15314100 -128472355 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 202 258 150 33 chr12 15314161 15314281 -128472174 - L2 LINE L2 -8 3305 3172 * 218 345 0 12 chr12 15314272 15314413 -128472042 - MIR SINE MIR -3 259 53 21 36 0 0 chr12 15314678 15314706 -128471749 + AT_rich Low_complexity Low_complexity 1 28 0 1145 267 46 20 chr12 15316219 15316957 -128469498 + L1ME4a LINE L1 5330 6119 -2 444 257 21 86 chr12 15317398 15317538 -128468917 - MIR3 SINE MIR -16 192 62 796 241 41 20 chr12 15319117 15319312 -128467143 + MIR SINE MIR 63 261 -1 432 302 16 8 chr12 15319893 15320019 -128466436 + MIR3 SINE MIR 75 201 -7 217 140 20 40 chr12 15320059 15320109 -128466346 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 424 37 0 0 chr12 15320236 15320328 -128466127 + L1PA3 LINE L1 6089 6180 0 435 232 27 19 chr12 15320580 15320768 -128465687 - MIR SINE MIR 0 262 14 2224 95 14 0 chr12 15320929 15321213 -128465242 + AluSp SINE Alu 1 288 -25 225 132 0 0 chr12 15321230 15321268 -128465187 + (CTA)n Simple_repeat Simple_repeat 3 40 0 221 283 87 22 chr12 15321326 15321418 -128465037 - MIR SINE MIR -116 146 49 189 0 0 0 chr12 15321539 15321560 -128464895 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2219 104 0 3 chr12 15322491 15322788 -128463667 + AluSp SINE Alu 1 296 -17 975 274 117 45 chr12 15323036 15323679 -128462776 - L1ME3A LINE L1 -225 6014 5326 589 172 55 7 chr12 15323770 15323915 -128462540 + MER3 DNA MER1_type 53 204 -5 704 283 91 20 chr12 15323926 15324386 -128462069 - L1ME3A LINE L1 -886 5329 4837 493 332 75 12 chr12 15324437 15324690 -128461765 - L1ME3A LINE L1 -1381 4834 4566 921 291 67 37 chr12 15324783 15324829 -128461626 - L1ME3A LINE L1 -2531 3684 3641 2109 125 3 0 chr12 15324829 15325125 -128461330 + AluSq SINE Alu 2 298 -15 921 291 67 37 chr12 15325125 15326066 -128460389 - L1ME3A LINE L1 -2574 3641 2668 371 284 128 30 chr12 15326248 15327208 -128459247 - L1ME3A LINE L1 -3786 2429 1409 303 269 0 106 chr12 15327292 15327433 -128459022 - L1M4 LINE L1 -3617 2529 2404 340 239 65 45 chr12 15327542 15327697 -128458758 - L1ME3A LINE L1 -5067 1138 981 304 327 19 0 chr12 15327933 15328037 -128458418 - L1ME3A LINE L1 -5480 725 620 28 61 0 0 chr12 15329105 15329154 -128457301 + AT_rich Low_complexity Low_complexity 1 49 0 1083 203 21 57 chr12 15329450 15329508 -128456947 + L1ME3 LINE L1 5834 5893 -269 2004 146 3 7 chr12 15329508 15329810 -128456645 + AluSx SINE Alu 1 301 -11 1083 203 21 57 chr12 15329810 15330086 -128456369 + L1ME3 LINE L1 5893 6156 -6 509 312 24 18 chr12 15330710 15330880 -128455575 - MIR SINE MIR -83 179 9 671 287 116 7 chr12 15330882 15331192 -128455263 - L3 LINE CR1 -194 1383 1040 358 353 29 58 chr12 15332823 15333135 -128453320 + L2 LINE L2 2554 2856 -458 239 321 71 12 chr12 15333410 15333494 -128452961 + L2 LINE L2 3176 3264 -49 295 282 68 10 chr12 15335001 15335104 -128451351 + MIR SINE MIR 102 210 -52 237 276 13 0 chr12 15335782 15335858 -128450597 + MIR SINE MIR 68 144 -64 891 237 0 5 chr12 15336099 15336293 -128450162 + MIR SINE MIR 70 262 0 4523 169 30 5 chr12 15336636 15337493 -128448962 + L1MA4 LINE L1 5408 6286 -14 827 207 61 5 chr12 15337827 15338025 -128448430 + MER3 DNA MER1_type 1 209 0 769 145 8 0 chr12 15338866 15338983 -128447472 + FLAM_C SINE Alu 1 118 -15 237 132 0 0 chr12 15338997 15339035 -128447420 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr12 15339037 15339060 -128447395 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 303 27 65 chr12 15339169 15339354 -128447101 - L2 LINE L2 -181 3091 2914 216 0 0 0 chr12 15340189 15340213 -128446242 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 362 301 46 75 chr12 15340363 15340536 -128445919 + MIR SINE MIR 20 187 -75 997 189 6 0 chr12 15340552 15340716 -128445739 + FRAM SINE Alu 1 158 -18 930 143 0 0 chr12 15342417 15342550 -128443905 + FLAM_A SINE Alu 1 133 0 321 127 152 51 chr12 15343136 15343215 -128443240 + LTR33A LTR ERVL 437 523 0 1955 145 0 26 chr12 15343416 15343726 -128442729 + AluSx SINE Alu 3 304 -8 225 211 78 125 chr12 15344029 15344157 -128442298 + L2 LINE L2 3188 3309 -4 443 285 31 57 chr12 15344242 15344435 -128442020 + MIR SINE MIR 74 261 -1 230 311 46 61 chr12 15345006 15345202 -128441253 + MLT1K LTR MaLR 2 194 -394 1313 243 87 23 chr12 15346529 15347011 -128439444 - LTR33 LTR ERVL -1 520 8 2382 81 3 0 chr12 15348971 15349279 -128437176 + AluY SINE Alu 1 309 -2 1221 168 5 28 chr12 15349669 15349883 -128436572 - MER58A DNA MER1_type -15 209 1 1984 132 0 42 chr12 15349971 15350282 -128436173 + AluJb SINE Alu 1 298 -14 2134 116 31 0 chr12 15350329 15350622 -128435833 + AluSx SINE Alu 1 302 -10 708 307 56 0 chr12 15351197 15351428 -128435027 - MIR SINE MIR 0 262 19 327 330 79 60 chr12 15351430 15351697 -128434758 + L3 LINE CR1 71 342 -1235 350 273 31 103 chr12 15351982 15352176 -128434279 + MIR SINE MIR 39 218 -44 2047 117 0 4 chr12 15352203 15352514 -128433941 + AluSc SINE Alu 1 310 0 438 325 30 18 chr12 15352556 15352722 -128433733 + L3 LINE CR1 373 540 -1037 710 294 126 68 chr12 15352956 15353385 -128433070 + L3 LINE CR1 642 1095 -482 26 30 0 0 chr12 15353424 15353457 -128432998 + AT_rich Low_complexity Low_complexity 1 33 0 2083 316 119 14 chr12 15353536 15354812 -128431643 + L2 LINE L2 1868 3299 -14 474 49 0 0 chr12 15355252 15355313 -128431142 + (TG)n Simple_repeat Simple_repeat 1 61 0 803 221 19 37 chr12 15355316 15355587 -128430868 + LTR33 LTR ERVL 256 521 0 209 320 41 57 chr12 15356305 15356427 -128430028 + L2 LINE L2 3184 3303 -10 406 283 12 57 chr12 15356667 15356884 -128429571 - MIR SINE MIR -56 206 3 865 300 12 4 chr12 15357795 15358038 -128428417 + MIR SINE MIR 18 262 0 626 298 54 30 chr12 15358044 15358376 -128428079 + L1MEc LINE L1 190 529 -6034 608 239 127 80 chr12 15358877 15359278 -128427177 + L1MEc LINE L1 851 1270 -5102 436 258 114 90 chr12 15359406 15359895 -128426560 + L1MEc LINE L1 1192 1840 -4692 436 293 46 36 chr12 15359903 15360183 -128426272 + L1MEc LINE L1 1889 2171 -4392 955 260 34 22 chr12 15360231 15360677 -128425778 + L1MEc LINE L1 2116 2566 -3997 1178 203 141 30 chr12 15360687 15361056 -128425399 + L1ME1 LINE L1 5606 6015 -149 234 128 0 0 chr12 15361056 15361095 -128425360 + MER3 DNA MER1_type 11 49 -160 253 214 55 0 chr12 15361116 15361197 -128425258 + L1ME1 LINE L1 6074 6161 -5 1734 159 19 12 chr12 15361523 15361843 -128424612 + MSTB LTR MaLR 1 322 -104 1344 153 36 14 chr12 15361843 15362066 -128424389 - AluJb SINE Alu -1 311 84 627 62 115 0 chr12 15362070 15362166 -128424289 + MSTB1 LTR MaLR 326 432 0 225 94 0 0 chr12 15362738 15362770 -128423685 + (CA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr12 15363367 15363389 -128423066 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 258 106 0 chr12 15365086 15365152 -128421303 - L2 LINE L2 -2 3311 3239 517 278 47 21 chr12 15365439 15365630 -128420825 - MIR SINE MIR -31 231 36 1510 281 48 9 chr12 15365710 15366296 -128420159 + L2 LINE L2 2709 3313 0 403 268 128 12 chr12 15366873 15367037 -128419418 - MIR SINE MIR -52 210 28 1737 190 59 48 chr12 15368444 15369034 -128417421 - Charlie2 DNA MER1_type -5 2857 2261 1034 244 109 6 chr12 15369153 15369473 -128416982 - Charlie2 DNA MER1_type -2499 363 11 782 297 57 8 chr12 15372619 15372865 -128413590 + MIR SINE MIR 5 262 0 889 119 91 40 chr12 15373371 15373547 -128412908 - MER53 DNA DNA -4 185 1 239 394 50 0 chr12 15373994 15374093 -128412362 + L2 LINE L2 3117 3220 -52 329 175 66 58 chr12 15375020 15375157 -128411298 + Charlie7 DNA MER1_type 2401 2538 -74 1809 231 126 15 chr12 15375171 15375737 -128410718 - MLT1G LTR MaLR -2 588 5 296 335 40 44 chr12 15375759 15376010 -128410445 + LTR33 LTR ERVL 30 279 -242 366 261 39 28 chr12 15376040 15376220 -128410235 + LTR33A LTR ERVL 328 509 -14 272 291 234 0 chr12 15376322 15376463 -128409992 + MIR3 SINE MIR 30 203 -5 1986 118 11 7 chr12 15376849 15377129 -128409326 + AluSx SINE Alu 23 303 -9 21 0 0 0 chr12 15377434 15377455 -128409000 + AT_rich Low_complexity Low_complexity 1 21 0 234 296 42 125 chr12 15378102 15378581 -128407874 - L2 LINE L2 -18 3254 2816 262 164 0 119 chr12 15380264 15380331 -128406124 + MER3 DNA MER1_type 146 204 -5 * 557 183 0 0 chr12 15380290 15380383 -128406072 - MER3 DNA MER1_type -116 93 1 202 333 143 29 chr12 15380600 15380810 -128405645 + MIR SINE MIR 21 254 -8 366 195 0 0 chr12 15380990 15381077 -128405378 + CT-rich Low_complexity Low_complexity 1 87 0 258 105 0 0 chr12 15382047 15382085 -128404370 + (T)n Simple_repeat Simple_repeat 1 38 0 778 253 103 0 chr12 15382312 15382506 -128403949 - MER20 DNA MER1_type -2 217 4 643 294 65 20 chr12 15382517 15382765 -128403690 - MIR SINE MIR -2 260 2 303 250 0 15 chr12 15384216 15384284 -128402171 + MER5B DNA MER1_type 2 68 -110 309 51 0 0 chr12 15384382 15384421 -128402034 + (CA)n Simple_repeat Simple_repeat 1 39 0 313 271 203 28 chr12 15385847 15386024 -128400431 - MIR SINE MIR -45 217 10 248 307 165 24 chr12 15387585 15387712 -128398743 - L3 LINE CR1 -1340 237 93 221 0 35 0 chr12 15387851 15387880 -128398575 + (CA)n Simple_repeat Simple_repeat 2 31 0 319 276 0 136 chr12 15388325 15388524 -128397931 + MIR SINE MIR 20 191 -71 522 306 111 14 chr12 15389032 15389248 -128397207 - MIR SINE MIR -4 258 22 623 250 132 5 chr12 15389660 15389872 -128396583 + MIR SINE MIR 5 243 -19 293 330 143 35 chr12 15389881 15390196 -128396259 - L2 LINE L2 -12 3260 2912 287 265 48 28 chr12 15390716 15390857 -128395598 - MIR SINE MIR -62 146 4 262 283 224 33 chr12 15391651 15391803 -128394652 + MIR SINE MIR 20 200 -62 1719 104 0 0 chr12 15392191 15392412 -128394043 - AluSg SINE Alu -51 259 39 210 341 44 0 chr12 15392433 15392524 -128393931 - L2 LINE L2 -213 3059 2965 264 295 63 32 chr12 15392803 15392898 -128393557 - L2 LINE L2 -11 3261 3164 22 0 0 0 chr12 15392899 15392921 -128393534 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 15392986 15393025 -128393430 + (CA)n Simple_repeat Simple_repeat 2 40 0 426 304 8 8 chr12 15394377 15394502 -128391953 - MER5B DNA MER1_type 0 178 54 180 163 0 0 chr12 15394512 15394555 -128391900 + T-rich Low_complexity Low_complexity 4 46 0 205 327 87 19 chr12 15394615 15394719 -128391736 - MIR SINE MIR -64 144 34 260 343 148 30 chr12 15396834 15397137 -128389318 + L2 LINE L2 2933 3271 -1 205 287 0 41 chr12 15397138 15397260 -128389195 + A-rich Low_complexity Low_complexity 2 118 0 445 265 204 0 chr12 15397518 15397665 -128388790 + MER5A DNA MER1_type 13 189 0 419 314 42 0 chr12 15397747 15397865 -128388590 + MIR3 SINE MIR 81 203 -5 467 339 39 30 chr12 15397952 15398182 -128388273 - L2 LINE L2 -1 3271 3040 245 169 17 0 chr12 15402906 15402965 -128383490 + GA-rich Low_complexity Low_complexity 2 61 0 242 273 11 11 chr12 15403193 15403281 -128383174 + (CACG)n Simple_repeat Simple_repeat 2 89 0 192 40 0 0 chr12 15404183 15404208 -128382247 + (CA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr12 15405805 15405831 -128380624 + AT_rich Low_complexity Low_complexity 1 26 0 245 169 0 96 chr12 15406313 15406396 -128380059 + MER116 DNA Mariner 6 80 0 300 347 48 8 chr12 15406419 15406543 -128379912 + L2 LINE L2 3138 3266 -6 2205 109 10 3 chr12 15406778 15407082 -128379373 + AluSp SINE Alu 1 306 -7 2397 201 114 24 chr12 15407437 15408174 -128378281 - MER69 DNA AcHobo -21 2505 1703 864 119 0 0 chr12 15408186 15408320 -128378135 - LTR1 LTR ERV1 -642 143 10 974 270 30 4 chr12 15408569 15408802 -128377653 - MER69 DNA AcHobo -842 384 146 1460 153 0 0 chr12 15408811 15409027 -128377428 + AluSx SINE Alu 53 268 -44 22 0 0 0 chr12 15409031 15409053 -128377402 + AT_rich Low_complexity Low_complexity 1 22 0 604 243 88 0 chr12 15409053 15409201 -128377254 - MER69 DNA AcHobo -2364 162 2 2399 89 7 0 chr12 15409696 15409999 -128376456 - AluSg SINE Alu -5 305 1 258 156 0 0 chr12 15411180 15411225 -128375230 + (CA)n Simple_repeat Simple_repeat 1 45 0 384 247 0 0 chr12 15411341 15411414 -128375041 + L2 LINE L2 3197 3269 -44 30 77 0 0 chr12 15411630 15411695 -128374760 + AT_rich Low_complexity Low_complexity 1 65 0 586 258 67 86 chr12 15411695 15412067 -128374388 - HAL1 LINE L1 0 2507 2143 1147 262 51 16 chr12 15412088 15412462 -128373993 - L1MC4 LINE L1 -387 7655 7269 786 279 26 52 chr12 15412740 15413146 -128373309 + MLT1H LTR MaLR 23 535 -14 526 292 67 21 chr12 15413531 15413741 -128372714 - MIR SINE MIR -44 218 3 796 241 103 5 chr12 15414103 15414327 -128372128 - MIR SINE MIR 0 262 17 241 265 96 0 chr12 15414390 15414473 -128371982 - MLT1I LTR MaLR 0 409 319 493 281 75 6 chr12 15414625 15414785 -128371670 - MLT1I LTR MaLR -230 179 9 2082 122 0 53 chr12 15415276 15415595 -128370860 + AluSx SINE Alu 1 302 -10 1264 169 13 42 chr12 15415628 15415761 -128370694 + AluJb SINE Alu 1 125 -187 2280 107 0 23 chr12 15415761 15416071 -128370384 + AluSx SINE Alu 1 303 -9 1264 169 13 42 chr12 15416071 15416174 -128370281 + AluJb SINE Alu 125 230 -82 511 143 45 26 chr12 15416198 15416352 -128370103 + GA-rich Low_complexity Low_complexity 3 159 0 2351 48 7 14 chr12 15417275 15417568 -128368887 - AluY SINE Alu -9 302 12 248 314 0 0 chr12 15418986 15419056 -128367399 + L2 LINE L2 2169 2238 -1076 237 350 70 0 chr12 15419105 15419248 -128367207 + L2 LINE L2 2617 2769 -545 2159 113 27 87 chr12 15419490 15419860 -128366595 + MER7A DNA MER2_type 1 346 0 2170 135 43 32 chr12 15420556 15420927 -128365528 + THE1C LTR MaLR 1 375 0 2430 74 0 3 chr12 15422026 15422338 -128364117 - AluY SINE Alu 0 311 1 2539 101 8 3 chr12 15424309 15424675 -128361780 - L1PB1 LINE L1 -3 6864 6497 278 116 4 94 chr12 15424675 15424956 -128361499 + (TA)n Simple_repeat Simple_repeat 1 255 0 10486 156 72 22 chr12 15424965 15429939 -128356516 - L1PB1 LINE L1 -363 6504 1101 394 303 69 11 chr12 15430528 15430703 -128355752 + L3b LINE CR1 1161 1345 -238 239 261 15 0 chr12 15430723 15430788 -128355667 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr12 15431063 15431085 -128355370 + AT_rich Low_complexity Low_complexity 1 22 0 274 306 43 104 chr12 15431457 15431872 -128354583 - L2 LINE L2 -337 2977 2588 988 193 0 38 chr12 15432021 15432259 -128354196 + L1MB8 LINE L1 5934 6162 -16 627 203 54 20 chr12 15432273 15432421 -128354034 + MLT2C1 LTR ERVL 189 341 -56 195 181 0 48 chr12 15432421 15432526 -128353929 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2274 224 22 27 chr12 15432566 15433329 -128353126 + MLT1C-int LTR MaLR 1 875 -496 1532 243 90 0 chr12 15433540 15433918 -128352537 + MLT1C-int LTR MaLR 960 1371 0 1222 219 98 36 chr12 15433918 15434247 -128352208 + MLT1C LTR MaLR 1 365 -102 13837 129 48 18 chr12 15434247 15435627 -128350828 - Tigger1 DNA MER2_type 0 2418 939 2152 129 0 19 chr12 15435627 15435937 -128350518 - AluSx SINE Alu -8 304 1 13837 129 48 18 chr12 15435937 15436905 -128349550 - Tigger1 DNA MER2_type -1479 939 1 1222 219 98 36 chr12 15436905 15437014 -128349441 + MLT1C LTR MaLR 365 466 -1 32 57 0 0 chr12 15437568 15437621 -128348834 + AT_rich Low_complexity Low_complexity 1 53 0 632 289 127 52 chr12 15438191 15438654 -128347801 - MLT1J LTR MaLR -8 503 6 21 0 0 0 chr12 15438834 15438855 -128347600 + AT_rich Low_complexity Low_complexity 1 21 0 249 235 111 12 chr12 15439925 15440006 -128346449 - L2 LINE L2 0 3313 3225 180 0 0 0 chr12 15440112 15440132 -128346323 + (A)n Simple_repeat Simple_repeat 1 20 0 5319 264 75 15 chr12 15440238 15443945 -128342510 - L1ME1 LINE L1 -9 6655 2700 1151 272 65 59 chr12 15443957 15444268 -128342187 - L1ME1 LINE L1 -4153 2491 2184 2627 49 0 0 chr12 15444268 15444576 -128341879 - AluY SINE Alu -3 308 1 1151 272 65 59 chr12 15444576 15444733 -128341722 - L1ME1 LINE L1 -4460 2184 2030 1526 170 27 82 chr12 15444733 15445063 -128341392 - AluJo SINE Alu 0 312 1 1151 272 65 59 chr12 15445063 15445658 -128340797 - L1ME1 LINE L1 -4614 2030 1311 1185 235 15 0 chr12 15445707 15446048 -128340407 - L1ME1 LINE L1 -5190 1356 1011 24 0 0 0 chr12 15446053 15446077 -128340378 + AT_rich Low_complexity Low_complexity 1 24 0 251 307 52 26 chr12 15446211 15446364 -128340091 - L1ME1 LINE L1 -5667 875 719 225 0 0 0 chr12 15446732 15446757 -128339698 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 15447280 15447302 -128339153 + AT_rich Low_complexity Low_complexity 1 22 0 2084 113 3 13 chr12 15447308 15447441 -128339014 + AluSx SINE Alu 3 136 -176 2506 68 0 0 chr12 15447441 15447751 -128338704 + AluY SINE Alu 1 310 -1 2084 113 3 13 chr12 15447751 15447908 -128338547 + AluSx SINE Alu 136 292 -20 2384 82 3 19 chr12 15447908 15448226 -128338229 + AluSq SINE Alu 1 313 0 23 0 0 0 chr12 15449424 15449447 -128337008 + AT_rich Low_complexity Low_complexity 1 23 0 2083 123 3 3 chr12 15450009 15450309 -128336146 + AluJb SINE Alu 5 304 -8 1139 176 49 59 chr12 15450439 15450763 -128335692 - MER33 DNA MER1_type -3 321 1 217 320 90 0 chr12 15452040 15452162 -128334293 - L3b LINE CR1 -338 1245 1113 2076 116 3 3 chr12 15453654 15453960 -128332495 + AluSq SINE Alu 1 306 0 2432 190 39 16 chr12 15453990 15454484 -128331971 + MLT1D LTR MaLR 1 505 0 2470 84 0 3 chr12 15454608 15454917 -128331538 - AluSp SINE Alu -2 311 4 2465 196 20 46 chr12 15456029 15456590 -128329865 + MLT2B3 LTR ERVL 1 546 -8 738 225 19 9 chr12 15456891 15457104 -128329351 + L1 LINE L1 5117 5331 -815 1111 121 21 32 chr12 15457107 15457297 -128329158 + L1PA16 LINE L1 5970 6157 -9 2345 103 0 0 chr12 15457322 15457624 -128328831 + AluSx SINE Alu 1 302 -10 453 168 87 18 chr12 15457624 15457772 -128328683 + L1MB2 LINE L1 5279 5429 -743 30164 105 11 56 chr12 15457784 15464219 -128322236 + L1PA7 LINE L1 12 6141 -13 3923 140 22 32 chr12 15464232 15464991 -128321464 + L1MB2 LINE L1 5417 6168 -3 275 351 50 18 chr12 15466368 15466541 -128319914 + MIR SINE MIR 32 208 -54 2010 142 7 0 chr12 15466550 15466846 -128319609 - AluSx SINE Alu -14 298 1 845 168 69 0 chr12 15467315 15467488 -128318967 + MER3 DNA MER1_type 4 188 -21 240 35 0 0 chr12 15469199 15469228 -128317227 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 343 96 61 chr12 15471069 15471573 -128314882 - L2 LINE L2 0 3272 2754 611 333 116 35 chr12 15472097 15472446 -128314009 - L2 LINE L2 -609 2705 2386 1802 158 24 30 chr12 15472446 15472744 -128313711 + AluJb SINE Alu 3 298 -14 611 333 116 35 chr12 15472744 15473022 -128313433 - L2 LINE L2 -928 2386 2027 426 156 126 52 chr12 15473513 15473648 -128312807 - MER112 DNA MER1_type -49 211 67 1758 143 91 96 chr12 15473699 15474127 -128312328 + MSTB LTR MaLR 1 426 0 829 271 52 61 chr12 15474217 15474450 -128312005 - LTR16C LTR ERVL -4 487 256 1077 219 37 0 chr12 15474450 15474665 -128311790 - MER58A DNA MER1_type -1 223 1 829 271 52 61 chr12 15474665 15474741 -128311714 - LTR16C LTR ERVL -235 256 181 27 0 0 0 chr12 15474855 15474882 -128311573 + AT_rich Low_complexity Low_complexity 1 27 0 211 356 74 22 chr12 15475399 15475534 -128310921 - MIR3 SINE MIR -46 162 21 943 235 169 86 chr12 15475724 15476226 -128310229 + MLT1H LTR MaLR 6 549 0 337 248 64 40 chr12 15478660 15478785 -128307670 - L2 LINE L2 -5 3308 3181 244 387 43 35 chr12 15478840 15479070 -128307385 + L2 LINE L2 2553 2784 -530 670 245 68 59 chr12 15479084 15479348 -128307107 - MIR SINE MIR -4 258 5 1665 139 70 22 chr12 15479614 15479887 -128306568 - AluSx SINE Alu -26 286 1 180 298 0 0 chr12 15480938 15480985 -128305470 - MIR SINE MIR -109 99 53 2204 114 18 47 chr12 15481567 15481953 -128304502 - THE1C LTR MaLR 0 375 1 391 278 309 11 chr12 15482785 15482976 -128303479 - MIR SINE MIR -8 254 7 4146 122 12 12 chr12 15482999 15483649 -128302806 + MER39B LTR ERV1 4 653 0 738 291 133 22 chr12 15484571 15484976 -128301479 - MLT1K LTR MaLR -17 571 122 697 249 17 28 chr12 15485536 15485713 -128300742 + LTR33 LTR ERVL 9 183 -338 542 209 22 22 chr12 15485823 15485962 -128300493 + LTR33 LTR ERVL 383 521 0 2508 46 0 3 chr12 15486960 15487267 -128299188 + AluY SINE Alu 1 306 -5 487 175 72 10 chr12 15488385 15488482 -128297973 + MLT1K LTR MaLR 480 582 -6 353 276 48 38 chr12 15489034 15489244 -128297211 + L1ME1 LINE L1 5613 5824 -297 477 192 231 19 chr12 15489308 15489464 -128296991 + MER53 DNA DNA 1 189 0 3983 156 50 1 chr12 15489554 15490220 -128296235 + MER50 LTR ERV1 13 710 -24 314 239 11 0 chr12 15490453 15490545 -128295910 + CT-rich Low_complexity Low_complexity 4 96 0 1470 213 195 24 chr12 15491071 15491532 -128294923 + MLT1F LTR MaLR 1 540 -2 250 233 78 35 chr12 15491574 15491690 -128294765 + L1MDb LINE L1 896 1016 -5393 526 248 79 25 chr12 15491731 15491933 -128294522 - L1M4 LINE L1 -1715 4431 4219 437 219 193 82 chr12 15491928 15492198 -128294257 + L1ME1 LINE L1 5863 6162 -4 * 22 0 0 0 chr12 15492436 15492458 -128293997 + AT_rich Low_complexity Low_complexity 1 22 0 226 211 77 19 chr12 15492504 15492556 -128293899 - MIR SINE MIR -75 133 79 238 397 19 6 chr12 15492646 15492802 -128293653 - L2 LINE L2 -211 3061 2904 1544 289 105 18 chr12 15493402 15493973 -128292482 + MLT1G LTR MaLR 1 577 -13 316 204 0 0 chr12 15494513 15494567 -128291888 - L2 LINE L2 -1 3312 3259 315 294 33 0 chr12 15495058 15495205 -128291250 - L1ME LINE L1 -695 5471 5319 190 284 68 27 chr12 15495511 15495585 -128290870 - L3 LINE CR1 -582 995 919 304 173 27 0 chr12 15496671 15496746 -128289709 + L1MEc LINE L1 1265 1341 -5055 1927 149 0 0 chr12 15496755 15497037 -128289418 + AluSx SINE Alu 5 286 -26 282 116 0 0 chr12 15497037 15497080 -128289375 + (TA)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr12 15497079 15497103 -128289352 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 2569 250 49 28 chr12 15497104 15498524 -128287931 + L1MEc LINE L1 2556 5047 -1168 619 213 0 0 chr12 15498524 15498632 -128287823 + Tigger3(Golem) DNA MER2_type 1 108 -2921 4718 112 30 3 chr12 15498633 15499357 -128287098 + Tigger3(Golem) DNA MER2_type 2285 3028 -1 3937 255 74 14 chr12 15499357 15500477 -128285978 - L1M3de LINE L1 -4575 2078 943 1081 208 48 107 chr12 15500533 15500940 -128285515 - MLT2B1 LTR ERVL -38 477 1 1324 284 75 16 chr12 15500949 15501647 -128284808 - L1M4 LINE L1 -1816 4330 3592 2278 81 3 17 chr12 15501708 15502006 -128284449 - AluY SINE Alu -17 294 1 326 218 30 0 chr12 15502036 15502137 -128284318 + (TA)n Simple_repeat Simple_repeat 1 104 0 46 33 0 0 chr12 15502161 15502221 -128284234 + AT_rich Low_complexity Low_complexity 1 60 0 769 61 0 0 chr12 15502267 15502365 -128284090 + L1PA6 LINE L1 1 98 -6048 * 36395 60 6 2 chr12 15502363 15507865 -128278590 + L1PA6 LINE L1 623 6147 -7 3913 190 60 12 chr12 15508028 15509183 -128277272 - L1MB7 LINE L1 0 6184 4977 6598 136 59 20 chr12 15509183 15509714 -128276741 - Tigger3b DNA MER2_type -1797 1231 722 2234 98 3 7 chr12 15509714 15510010 -128276445 - AluSq SINE Alu -18 295 1 6598 136 59 20 chr12 15510010 15510651 -128275804 - Tigger3b DNA MER2_type -2306 722 14 3223 235 38 110 chr12 15510655 15512317 -128274138 + L1M1 LINE L1 1320 2826 -3556 8346 45 1 0 chr12 15512317 15514116 -128272339 - L1PA5 LINE L1 -3 6151 4352 3223 235 38 110 chr12 15514116 15515011 -128271444 + L1M1 LINE L1 2826 3784 -2598 758 150 8 0 chr12 15515143 15515263 -128271192 + AluSg/x SINE Alu 172 292 -20 271 225 8 136 chr12 15515266 15515502 -128270953 + L1M1 LINE L1 4118 4323 -2059 330 283 90 21 chr12 15515626 15515771 -128270684 + L1M1 LINE L1 4406 4560 -1822 34323 78 21 14 chr12 15616127 15619617 -128166838 - HERVL-A1 LTR ERVL -1112 4542 1079 1985 141 0 33 chr12 15619617 15619923 -128166532 + AluSx SINE Alu 1 296 -16 34323 78 21 14 chr12 15619923 15620589 -128165866 - HERVL-A1 LTR ERVL -4575 1079 348 2109 76 4 8 chr12 15620589 15620853 -128165602 - AluY SINE Alu -20 291 29 34323 78 21 14 chr12 15620853 15621204 -128165251 - HERVL-A1 LTR ERVL -5306 348 1 2860 111 23 20 chr12 15621204 15621647 -128164808 - MLT2A1 LTR ERVL 0 444 1 10928 169 8 28 chr12 15621670 15623466 -128162989 + L1P4 LINE L1 3275 5015 -1146 2221 75 0 7 chr12 15623466 15623744 -128162711 + AluY SINE Alu 36 311 0 10928 169 8 28 chr12 15623744 15624192 -128162263 + L1P4 LINE L1 5015 5470 -691 418 192 0 0 chr12 15624192 15624265 -128162190 + AluSp SINE Alu 116 188 -115 2117 112 7 0 chr12 15624265 15624551 -128161904 + AluSq SINE Alu 18 305 -8 2470 79 3 0 chr12 15624572 15624876 -128161579 + AluSc SINE Alu 1 305 -4 1317 210 104 22 chr12 15624977 15625343 -128161112 - MSTD LTR MaLR 0 396 1 189 0 0 0 chr12 15625428 15625449 -128161006 + (T)n Simple_repeat Simple_repeat 1 21 0 1124 239 17 3 chr12 15625479 15625768 -128160687 + L1MA4 LINE L1 6005 6297 -3 230 183 17 17 chr12 15625764 15625824 -128160631 + L1M1 LINE L1 4880 4939 -1443 * 2351 50 4 0 chr12 15625828 15626108 -128160347 + AluY SINE Alu 1 281 -30 951 230 261 46 chr12 15626123 15626416 -128160039 + LTR50 LTR ERVL 150 378 -417 2033 136 0 7 chr12 15626416 15626710 -128159745 + AluSx SINE Alu 1 292 -20 951 230 261 46 chr12 15626710 15626726 -128159729 + LTR50 LTR ERVL 378 389 -406 2384 59 3 3 chr12 15626726 15627016 -128159439 - AluY SINE Alu -19 292 3 951 230 261 46 chr12 15627016 15627187 -128159268 + LTR50 LTR ERVL 389 735 -60 565 237 0 66 chr12 15627234 15627326 -128159129 - Tigger6a DNA MER2_type -516 1081 1001 859 87 24 0 chr12 15627326 15627453 -128159002 + L1MB2 LINE L1 6042 6171 0 565 237 0 66 chr12 15627453 15627512 -128158943 - Tigger6a DNA MER2_type -596 1001 940 881 145 0 22 chr12 15627512 15627650 -128158805 + FLAM_C SINE Alu 1 135 -8 3832 154 31 114 chr12 15627651 15628120 -128158335 - Tigger6a DNA MER2_type -647 950 443 2722 42 0 0 chr12 15628120 15628431 -128158024 - AluY SINE Alu 0 311 1 3832 154 31 114 chr12 15628431 15628928 -128157527 - Tigger6a DNA MER2_type -1154 443 -94 1876 133 25 0 chr12 15628928 15629207 -128157248 - AluSg SINE Alu -24 286 1 3832 154 31 114 chr12 15629207 15629239 -128157216 - Tigger6a DNA MER2_type -1691 4294967202 56 1547 198 144 5 chr12 15629239 15629649 -128156806 + MLT1C LTR MaLR 1 467 0 3832 154 31 114 chr12 15629649 15629701 -128156754 - Tigger6a DNA MER2_type -1540 57 2 31 0 0 0 chr12 15629709 15629740 -128156715 + AT_rich Low_complexity Low_complexity 1 31 0 2177 108 20 7 chr12 15629744 15630040 -128156415 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 15630488 15630510 -128155945 + AT_rich Low_complexity Low_complexity 1 22 0 2118 108 0 57 chr12 15630574 15630888 -128155567 - AluSg SINE Alu -12 298 3 2249 123 0 3 chr12 15630889 15631191 -128155264 - AluSx SINE Alu -11 301 1 2432 222 31 56 chr12 15631372 15631484 -128154971 + L1 LINE L1 2804 2917 -3229 1973 110 59 0 chr12 15631484 15631774 -128154681 + AluY SINE Alu 5 311 0 2432 222 31 56 chr12 15631774 15632636 -128153819 + L1 LINE L1 2917 3695 -2451 238 151 70 12 chr12 15632664 15632750 -128153705 + L1 LINE L1 3663 3753 -2393 1647 106 5 0 chr12 15632768 15632986 -128153469 + AluSq SINE Alu 3 221 -92 689 129 0 0 chr12 15632989 15633090 -128153365 - AluS SINE Alu -211 102 2 2220 84 20 13 chr12 15633101 15633399 -128153056 - AluSx SINE Alu -12 300 1 2348 85 13 0 chr12 15633481 15633788 -128152667 - AluY SINE Alu 0 311 1 2148 117 0 0 chr12 15634552 15634867 -128151588 - AluSg SINE Alu 0 315 1 650 347 48 3 chr12 15635268 15635620 -128150835 + ERVL LTR ERVL 4704 5071 -693 349 214 51 26 chr12 15635804 15635921 -128150534 + ERVL LTR ERVL 5261 5380 -384 746 225 41 103 chr12 15635980 15636042 -128150413 + MLT1J LTR MaLR 9 73 -438 1932 133 14 7 chr12 15636042 15636335 -128150120 - AluJb SINE Alu -17 295 1 746 225 41 103 chr12 15636335 15636543 -128149912 + MLT1J LTR MaLR 73 262 -249 920 124 16 0 chr12 15636691 15636820 -128149635 + AluSq/x SINE Alu 1 131 -181 1118 201 11 49 chr12 15636823 15637086 -128149369 + MLT1E3 LTR MaLR 372 624 0 1976 155 0 0 chr12 15637496 15637800 -128148655 - AluSx SINE Alu -8 304 1 2065 124 0 17 chr12 15637805 15638122 -128148333 - AluSx SINE Alu 0 312 1 789 224 54 85 chr12 15638273 15638532 -128147923 + MLT1J LTR MaLR 261 511 0 1782 164 28 3 chr12 15638807 15639093 -128147362 + AluJb SINE Alu 1 293 -19 897 230 123 109 chr12 15639195 15639674 -128146781 - MLT1D LTR MaLR 0 505 20 189 0 0 0 chr12 15639752 15639773 -128146682 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr12 15639788 15639823 -128146632 + AT_rich Low_complexity Low_complexity 1 35 0 324 70 0 0 chr12 15639845 15639888 -128146567 + (TG)n Simple_repeat Simple_repeat 2 44 0 1055 127 0 7 chr12 15639889 15640039 -128146416 - AluSg/x SINE Alu -17 295 147 279 286 126 39 chr12 15640572 15640692 -128145763 + MIR SINE MIR 53 196 -66 2418 86 0 3 chr12 15640692 15640995 -128145460 + AluSg SINE Alu 1 302 -8 279 286 126 39 chr12 15640995 15641056 -128145399 + MIR SINE MIR 196 250 -12 239 204 0 0 chr12 15641175 15641219 -128145236 - MLT1A2 LTR MaLR 0 374 331 799 157 0 0 chr12 15641220 15641341 -128145114 + AluJo SINE Alu 1 121 -181 6095 135 150 99 chr12 15641341 15642951 -128143504 + pTR5 LTR ERV1 748 2438 0 988 175 68 0 chr12 15642952 15643129 -128143326 + AluJo SINE Alu 111 299 -13 1083 224 78 59 chr12 15643241 15643599 -128142856 - MLT1A1 LTR MaLR 0 365 1 347 89 0 0 chr12 15644664 15644709 -128141746 + Alu SINE Alu 1 45 -257 1294 92 0 6 chr12 15644709 15644882 -128141573 + AluSg/x SINE Alu 137 308 -4 2233 107 10 0 chr12 15645178 15645478 -128140977 + AluSx SINE Alu 1 303 -9 263 371 43 0 chr12 15645531 15645647 -128140808 + L2 LINE L2 3150 3270 -2 1445 143 103 8 chr12 15645725 15645977 -128140478 - AluJo SINE Alu -14 298 23 2308 148 8 23 chr12 15646003 15646408 -128140047 - L1MA5 LINE L1 -172 6012 5674 2162 89 0 18 chr12 15646408 15646690 -128139765 - AluSq SINE Alu -36 277 1 2308 148 8 23 chr12 15646690 15646705 -128139750 - L1MA5 LINE L1 -510 5674 5660 471 18 0 0 chr12 15646749 15646805 -128139650 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2136 122 0 0 chr12 15646805 15647091 -128139364 - AluSx SINE Alu -26 286 1 1469 204 27 7 chr12 15647128 15647422 -128139033 + AluJo SINE Alu 6 305 -7 336 218 182 24 chr12 15647425 15647590 -128138865 - L1MC5 LINE L1 -510 7451 7261 2407 63 7 3 chr12 15647591 15647892 -128138563 - AluY SINE Alu -7 304 3 2331 91 3 0 chr12 15647895 15648191 -128138264 - AluSg SINE Alu -13 297 1 2527 57 0 16 chr12 15648654 15648970 -128137485 + AluY SINE Alu 1 311 0 545 343 164 18 chr12 15648980 15649365 -128137090 - MLT1K LTR MaLR -91 497 57 1165 315 83 12 chr12 15649365 15649907 -128136548 + MLT2E LTR ERVL 1 627 -1 1576 155 37 37 chr12 15649995 15650319 -128136136 + AluJo SINE Alu 1 312 0 2239 155 72 42 chr12 15650319 15650584 -128135871 + L1MA8 LINE L1 5777 6033 -258 2433 70 7 13 chr12 15650584 15650884 -128135571 + AluY SINE Alu 2 299 -12 2239 155 72 42 chr12 15650884 15650934 -128135521 + L1MA8 LINE L1 6033 6080 -211 2064 135 0 7 chr12 15650934 15651238 -128135217 + AluSx SINE Alu 1 302 -10 2239 155 72 42 chr12 15651238 15651418 -128135037 + L1MA8 LINE L1 6080 6288 -3 2427 45 41 7 chr12 15651434 15651724 -128134731 + AluY SINE Alu 1 300 -11 2445 83 0 0 chr12 15651779 15652080 -128134375 + AluY SINE Alu 6 306 -5 713 354 50 20 chr12 15652100 15652496 -128133959 + ERVL-E LTR ERVL 287 694 -5070 2941 88 23 5 chr12 15652600 15652997 -128133458 + MLT2A1 LTR ERVL 1 404 -40 272 97 21 69 chr12 15652997 15653141 -128133314 + (TA)n Simple_repeat Simple_repeat 1 137 0 396 42 0 0 chr12 15653151 15653199 -128133256 + MLT2A1 LTR ERVL 406 453 0 43920 75 8 10 chr12 15653199 15654196 -128132259 + HERVL-A1-A1 LTR ERVL 1 998 -4656 2246 110 7 7 chr12 15654196 15654496 -128131959 - AluSx SINE Alu -12 300 1 43920 75 8 10 chr12 15654496 15656789 -128129666 + HERVL-A1-A1 LTR ERVL 998 3294 -2360 2246 116 0 7 chr12 15656789 15657099 -128129356 - AluSg SINE Alu -2 308 1 43920 75 8 10 chr12 15657099 15659471 -128126984 + HERVL-A1-A1 LTR ERVL 3294 5654 0 2511 101 35 11 chr12 15659471 15659837 -128126618 + MLT2A1 LTR ERVL 1 375 -69 180 0 0 0 chr12 15659837 15659857 -128126598 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr12 15660039 15660060 -128126395 + AT_rich Low_complexity Low_complexity 1 21 0 344 56 33 22 chr12 15660060 15660120 -128126335 + MLT2A1 LTR ERVL 391 442 -2 1999 269 80 2 chr12 15660122 15660636 -128125819 + ERVL LTR ERVL 2940 3493 -2271 3230 269 71 25 chr12 15660686 15661725 -128124730 + ERVL LTR ERVL 3576 4662 -1102 2054 232 167 16 chr12 15661735 15662495 -128123960 - L1MCa LINE L1 -4489 1937 1063 2081 127 10 16 chr12 15662498 15662806 -128123649 - AluSx SINE Alu -6 306 1 2442 82 3 16 chr12 15662817 15663132 -128123323 - AluY SINE Alu 0 311 1 1884 128 0 66 chr12 15663202 15663337 -128123118 + AluSx SINE Alu 1 143 -181 2300 107 3 3 chr12 15663337 15663647 -128122808 + AluSg SINE Alu 1 310 0 1884 128 0 66 chr12 15663647 15663855 -128122600 + AluSx SINE Alu 143 324 0 1089 125 36 24 chr12 15663858 15664026 -128122429 + AluSg/x SINE Alu 127 296 -16 224 138 64 32 chr12 15664027 15664121 -128122334 + (TA)n Simple_repeat Simple_repeat 1 97 0 6716 78 30 34 chr12 15664863 15666102 -128120353 - L1PA12 LINE L1 0 6168 4931 644 277 78 102 chr12 15666106 15666648 -128119807 - HAL1 LINE L1 -167 2340 1819 2564 68 0 0 chr12 15666648 15666957 -128119498 - AluY SINE Alu -2 309 1 644 277 78 102 chr12 15666957 15667161 -128119294 - HAL1 LINE L1 -688 1819 1612 783 208 7 7 chr12 15667169 15667318 -128119137 - FRAM SINE Alu -26 150 2 662 249 82 85 chr12 15667322 15667639 -128118816 - HAL1 LINE L1 -880 1627 1312 1834 214 84 65 chr12 15667646 15668183 -128118272 + MLT2B3 LTR ERVL 1 547 -7 2296 91 3 0 chr12 15668263 15668574 -128117881 + AluSp SINE Alu 1 312 0 2376 89 0 0 chr12 15668576 15668868 -128117587 + AluSc SINE Alu 1 292 -17 3031 161 18 34 chr12 15668970 15669015 -128117440 - L1MB4 LINE L1 0 6180 6136 2241 126 0 3 chr12 15669015 15669325 -128117130 - AluSx SINE Alu -3 309 1 3031 161 18 34 chr12 15669325 15669901 -128116554 - L1MB4 LINE L1 -44 6136 5569 514 193 8 34 chr12 15669903 15670022 -128116433 - L1MB4 LINE L1 -660 5518 5403 477 225 40 46 chr12 15670027 15670178 -128116277 - L1MB4 LINE L1 -1616 4530 4381 2244 104 3 22 chr12 15670353 15670670 -128115785 + AluSx SINE Alu 1 311 -1 1436 214 92 32 chr12 15670723 15671280 -128115175 - Zaphod DNA AcHobo -189 3842 3253 1780 199 20 35 chr12 15671412 15671810 -128114645 + MSTD LTR MaLR 1 392 -4 3790 247 50 45 chr12 15671816 15672142 -128114313 + MSTD-int LTR MaLR 2 325 -1410 2519 108 27 14 chr12 15672142 15672512 -128113943 - THE1C LTR MaLR 0 375 1 10050 115 37 21 chr12 15672512 15673233 -128113222 - THE1C-int LTR MaLR 0 1580 872 1665 132 8 0 chr12 15673233 15673475 -128112980 - AluSq SINE Alu -19 294 51 10050 115 37 21 chr12 15673475 15673910 -128112545 - THE1C-int LTR MaLR -708 872 445 2214 96 13 23 chr12 15673910 15674212 -128112243 - AluSq SINE Alu -14 299 1 10050 115 37 21 chr12 15674212 15674610 -128111845 - THE1C-int LTR MaLR -1135 445 1 1997 104 45 117 chr12 15674610 15675013 -128111442 - THE1C LTR MaLR 0 375 2 3790 247 50 45 chr12 15675013 15675440 -128111015 + MSTD-int LTR MaLR 325 748 -987 189 0 0 0 chr12 15675440 15675461 -128110994 + (TCTCCC)n Simple_repeat Simple_repeat 6 26 0 7216 59 7 9 chr12 15675461 15676965 -128109490 + SVA Other Other 1 1386 0 3790 247 50 45 chr12 15676965 15677807 -128108648 + MSTD-int LTR MaLR 747 1625 -110 453 192 25 8 chr12 15677821 15677941 -128108514 + CT-rich Low_complexity Low_complexity 3 124 0 2223 102 6 6 chr12 15677941 15678254 -128108201 - AluSp SINE Alu 0 313 1 2254 105 0 0 chr12 15678558 15678862 -128107593 - AluSc SINE Alu -5 304 1 1047 176 21 0 chr12 15679034 15679222 -128107233 + AluSg/x SINE Alu 119 310 0 599 250 29 0 chr12 15679222 15679394 -128107061 + Zaphod DNA AcHobo 1119 1295 -2736 1707 183 45 53 chr12 15679394 15679609 -128106846 - MSTD LTR MaLR 0 396 184 2215 113 0 0 chr12 15679609 15679902 -128106553 - AluSg SINE Alu -17 293 1 1707 183 45 53 chr12 15679902 15680085 -128106370 - MSTD LTR MaLR -212 184 1 581 171 45 0 chr12 15680085 15680196 -128106259 - MSTD-int LTR MaLR 0 1735 1620 922 114 0 8 chr12 15680197 15680328 -128106127 + AluJb SINE Alu 4 133 -179 2420 94 0 0 chr12 15680330 15680638 -128105817 + AluY SINE Alu 1 308 -3 1503 195 128 137 chr12 15680927 15681569 -128104886 - MLT1E1 LTR MaLR 0 654 19 186 118 0 0 chr12 15681749 15681783 -128104672 + (CTA)n Simple_repeat Simple_repeat 2 35 0 350 274 87 149 chr12 15681790 15681889 -128104566 - MIR SINE MIR -10 252 148 2172 94 0 17 chr12 15681889 15682187 -128104268 - AluSg SINE Alu -17 293 1 1606 162 10 40 chr12 15682190 15682364 -128104091 - AluJb SINE Alu -10 302 124 207 0 0 0 chr12 15682364 15682387 -128104068 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2089 119 0 0 chr12 15682387 15682672 -128103783 - AluSx SINE Alu -27 285 1 1606 162 10 40 chr12 15682672 15682793 -128103662 - AluJb SINE Alu -186 126 15 350 274 87 149 chr12 15682793 15682930 -128103525 - MIR SINE MIR -116 146 27 2038 114 45 0 chr12 15683017 15683306 -128103149 - AluSq SINE Alu -11 302 1 191 354 92 0 chr12 15684062 15684127 -128102328 + L2 LINE L2 3243 3313 0 2156 121 10 3 chr12 15684350 15684656 -128101799 + AluSx SINE Alu 1 308 -4 2257 111 0 0 chr12 15684656 15684953 -128101502 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr12 15685128 15685154 -128101301 + AT_rich Low_complexity Low_complexity 1 26 0 218 250 39 19 chr12 15685341 15685393 -128101062 + L2 LINE L2 3022 3074 -198 2270 82 0 29 chr12 15685396 15685702 -128100753 - AluSc SINE Alu -12 297 1 204 286 0 18 chr12 15685814 15685870 -128100585 + L2 LINE L2 3168 3222 -91 2149 113 0 22 chr12 15686012 15686330 -128100125 - AluSx SINE Alu -1 311 1 210 257 164 24 chr12 15686340 15686488 -128099967 - MIR SINE MIR -58 204 39 200 86 29 0 chr12 15687112 15687147 -128099308 + (CGG)n Simple_repeat Simple_repeat 3 38 0 300 237 129 50 chr12 15687321 15687460 -128098995 - L1M2 LINE L1 -6167 682 533 291 216 54 0 chr12 15689720 15689794 -128096661 - L1ME LINE L1 -254 5867 5790 249 302 24 41 chr12 15689797 15689966 -128096489 - L1ME LINE L1 -269 5852 5687 315 267 156 37 chr12 15690079 15690214 -128096241 - L1ME LINE L1 -2345 5463 5313 1384 209 20 30 chr12 15690381 15690677 -128095778 - AluJb SINE Alu -19 293 1 1670 149 62 0 chr12 15690772 15691061 -128095394 - AluSx SINE Alu -5 307 1 2322 88 7 0 chr12 15691364 15691660 -128094795 - AluSp SINE Alu -15 298 1 21 36 0 0 chr12 15692400 15692428 -128094027 + AT_rich Low_complexity Low_complexity 1 28 0 502 348 118 10 chr12 15694790 15695086 -128091369 - MLT1J LTR MaLR -183 328 1 21 0 0 0 chr12 15695244 15695265 -128091190 + AT_rich Low_complexity Low_complexity 1 21 0 1827 127 3 63 chr12 15695522 15695838 -128090617 - AluJo SINE Alu -15 297 1 204 200 0 0 chr12 15696957 15697012 -128089443 + A-rich Low_complexity Low_complexity 1 55 0 385 230 118 15 chr12 15697067 15697202 -128089253 + MIR SINE MIR 84 232 -30 930 120 0 0 chr12 15698240 15698365 -128088090 + AluSg/x SINE Alu 171 295 -15 1973 147 0 0 chr12 15698409 15698719 -128087736 - AluSx SINE Alu 0 310 1 1982 67 4 4 chr12 15698782 15699036 -128087419 - AluY SINE Alu -14 297 44 2070 114 6 44 chr12 15699036 15699350 -128087105 - AluSx SINE Alu -7 305 3 2344 107 0 0 chr12 15699513 15699822 -128086633 - AluSx SINE Alu -3 309 1 2817 245 144 57 chr12 15700382 15700452 -128086003 - HAL1 LINE L1 -629 1878 1816 2492 131 36 17 chr12 15700452 15700872 -128085583 + MSTA LTR MaLR 1 428 0 2817 245 144 57 chr12 15700872 15702041 -128084414 - HAL1 LINE L1 -691 1816 751 2141 122 10 0 chr12 15702041 15702344 -128084111 - AluSx SINE Alu -6 306 1 2817 245 144 57 chr12 15702344 15702662 -128083793 - HAL1 LINE L1 -1756 751 462 1809 157 7 3 chr12 15702662 15702955 -128083500 - AluSx SINE Alu -18 294 1 2817 245 144 57 chr12 15702955 15703032 -128083423 - HAL1 LINE L1 -2045 462 99 21 36 0 0 chr12 15703141 15703169 -128083286 + AT_rich Low_complexity Low_complexity 1 28 0 909 207 0 34 chr12 15703426 15703605 -128082850 + AluJb SINE Alu 86 258 -54 256 149 149 0 chr12 15704596 15704643 -128081812 - Tigger4(Zombi) DNA MER2_type -2679 52 -1 1475 171 20 47 chr12 15704988 15705286 -128081169 - AluJo SINE Alu -22 290 1 361 236 47 39 chr12 15705472 15705599 -128080856 - L1MC5 LINE L1 -44 7917 7790 760 143 0 0 chr12 15709432 15709558 -128076897 - AluSp/q SINE Alu -7 306 181 1638 111 0 0 chr12 15709558 15709774 -128076681 - AluSp SINE Alu -97 216 1 2264 108 0 0 chr12 15709776 15710071 -128076384 - AluSx SINE Alu -17 295 1 1822 163 24 0 chr12 15710071 15710360 -128076095 - AluSx SINE Alu -12 300 5 2464 56 13 0 chr12 15711044 15711348 -128075107 - AluSp SINE Alu -5 308 1 452 245 185 10 chr12 15711357 15711557 -128074898 + MER102b DNA MER1_type 91 325 -16 190 306 83 0 chr12 15712912 15712984 -128073471 + MIR SINE MIR 67 144 -118 182 281 47 31 chr12 15712996 15713060 -128073395 + MIR SINE MIR 20 84 -178 2185 99 3 0 chr12 15713139 15713445 -128073010 - AluSq SINE Alu 0 307 1 274 257 73 28 chr12 15713471 15713580 -128072875 + MIR SINE MIR 94 207 -55 251 270 180 42 chr12 15713932 15714121 -128072334 - L2 LINE L2 -8 3305 3091 833 250 117 4 chr12 15714135 15714383 -128072072 + MER5C DNA MER1_type 2 277 -47 30 0 0 0 chr12 15717232 15717262 -128069193 + AT_rich Low_complexity Low_complexity 1 30 0 2400 87 0 10 chr12 15718306 15718618 -128067837 + AluSq SINE Alu 4 312 -1 604 313 136 61 chr12 15718774 15719400 -128067055 - L3 LINE CR1 -2 1575 903 333 288 65 6 chr12 15719461 15719631 -128066824 - L1MDa LINE L1 -2838 3702 3523 510 305 138 29 chr12 15719660 15720037 -128066418 - L1MDa LINE L1 -3090 3450 3033 406 279 19 80 chr12 15720114 15720376 -128066079 - L1MDa LINE L1 -3706 2834 2589 420 289 77 51 chr12 15720629 15721061 -128065394 - L1MDa LINE L1 -869 2032 1633 376 346 108 9 chr12 15721732 15721946 -128064509 - MIR SINE MIR -10 252 18 319 311 155 27 chr12 15722012 15722485 -128063970 - L1MC/D LINE L1 -779 5367 5205 2120 125 0 3 chr12 15722618 15722921 -128063534 - AluSq SINE Alu -11 302 1 2165 101 14 0 chr12 15723139 15723436 -128063019 - AluSg SINE Alu -9 301 1 245 109 22 0 chr12 15723486 15723532 -128062923 + CT-rich Low_complexity Low_complexity 2 48 0 1855 186 3 3 chr12 15723540 15723852 -128062603 - AluJo SINE Alu 0 312 1 1855 135 42 3 chr12 15724033 15724322 -128062133 - AluSx SINE Alu -12 300 1 1948 157 0 13 chr12 15726828 15727141 -128059314 - AluJb SINE Alu -1 311 3 1972 127 7 0 chr12 15727524 15727823 -128058632 - AluSq SINE Alu -12 301 1 525 105 0 0 chr12 15728090 15728166 -128058289 - AluSg1 SINE Alu -13 297 222 1101 101 0 7 chr12 15728166 15728314 -128058141 - AluSg1 SINE Alu -160 149 3 220 220 0 0 chr12 15728783 15728833 -128057622 + T-rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr12 15728833 15728855 -128057600 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 198 261 0 0 chr12 15729200 15729246 -128057209 - L2 LINE L2 -5 3308 3263 234 0 0 0 chr12 15729541 15729567 -128056888 + (CA)n Simple_repeat Simple_repeat 1 26 0 1102 204 26 30 chr12 15731328 15731592 -128054863 - L1MB7 LINE L1 0 6184 5922 2726 195 39 36 chr12 15731592 15732169 -128054286 + Tigger7 DNA MER2_type 1 574 -2013 198 0 0 0 chr12 15732169 15732191 -128054264 + (TATG)n Simple_repeat Simple_repeat 2 23 0 2726 195 39 36 chr12 15732191 15732289 -128054166 + Tigger7 DNA MER2_type 574 2587 0 4686 195 45 31 chr12 15732289 15732834 -128053621 - L1MB7 LINE L1 -255 5923 5388 1054 49 0 28 chr12 15732834 15732978 -128053477 + L1PA7 LINE L1 6015 6154 0 4686 195 45 31 chr12 15732978 15734156 -128052299 - L1MB7 LINE L1 -790 5388 4165 2054 134 0 0 chr12 15734156 15734454 -128052001 + AluSx SINE Alu 1 298 -14 4686 195 45 31 chr12 15734454 15734666 -128051789 - L1MB7 LINE L1 -2013 4165 3958 24 32 0 0 chr12 15735342 15735373 -128051082 + AT_rich Low_complexity Low_complexity 1 31 0 464 304 34 34 chr12 15735394 15735542 -128050913 - MIR3 SINE MIR -24 184 37 353 242 34 153 chr12 15735701 15735792 -128050663 + MLT1I LTR MaLR 80 143 -266 1044 152 141 0 chr12 15735792 15735990 -128050465 - MER30 DNA MER1_type -1 229 4 353 242 34 153 chr12 15735990 15736107 -128050348 + MLT1I LTR MaLR 143 272 -137 629 212 8 15 chr12 15736360 15736492 -128049963 - FLAM_A SINE Alu -2 131 1 1155 194 0 15 chr12 15737188 15737394 -128049061 - MER2 DNA MER2_type -137 208 6 27 62 0 0 chr12 15739526 15739574 -128046881 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr12 15740305 15740333 -128046122 + AT_rich Low_complexity Low_complexity 1 28 0 580 262 76 40 chr12 15740511 15740736 -128045719 - MIR SINE MIR -12 250 18 1609 224 91 37 chr12 15741447 15741772 -128044683 - MER90 LTR ERV1 -6 569 202 2448 75 0 0 chr12 15741772 15742077 -128044378 + AluY SINE Alu 1 305 -6 1609 224 91 37 chr12 15742077 15742291 -128044164 - MER90 LTR ERV1 -373 202 1 785 223 120 24 chr12 15742466 15742758 -128043697 - L1M4 LINE L1 -1986 4160 3841 1385 178 122 36 chr12 15742782 15743171 -128043284 - MLT1C LTR MaLR -56 411 1 234 337 0 12 chr12 15743268 15743351 -128043104 - L1M4 LINE L1 -2292 3854 3773 * 935 221 54 26 chr12 15743347 15743737 -128042718 + L1M4 LINE L1 2863 3263 -2883 405 0 0 0 chr12 15743737 15743782 -128042673 + (CA)n Simple_repeat Simple_repeat 2 46 0 4300 177 46 7 chr12 15743806 15744695 -128041760 - L1MB8 LINE L1 0 6178 5255 346 151 86 11 chr12 15744742 15744835 -128041620 - L1MB8 LINE L1 -873 5273 5174 216 0 0 0 chr12 15744999 15745023 -128041432 + (T)n Simple_repeat Simple_repeat 1 24 0 180 313 167 21 chr12 15747313 15747457 -128038998 + L2 LINE L2 2362 2526 -788 2036 134 10 0 chr12 15747969 15748275 -128038180 + AluJb SINE Alu 1 309 -3 1130 207 0 0 chr12 15748536 15748753 -128037702 - AluJo SINE Alu -1 311 95 2206 90 0 10 chr12 15748787 15749088 -128037367 - AluSg SINE Alu -12 298 1 692 222 123 6 chr12 15749102 15749273 -128037182 + L2 LINE L2 2410 2600 -714 337 202 11 75 chr12 15749240 15749334 -128037121 + L2 LINE L2 3226 3313 0 * 204 333 93 46 chr12 15749273 15749489 -128036966 - L2 LINE L2 -424 2890 2665 * 1435 237 89 59 chr12 15751356 15751884 -128034571 - L2 LINE L2 -1022 2292 1749 352 203 30 36 chr12 15751973 15752118 -128034337 - L1P LINE L1 -731 5420 5270 259 216 0 81 chr12 15752172 15752246 -128034209 + MER58A DNA MER1_type 35 102 -5 322 274 27 0 chr12 15752339 15752412 -128034043 + MER58A DNA MER1_type 149 223 -1 2313 94 0 0 chr12 15752820 15753117 -128033338 - AluY SINE Alu -13 298 2 2308 84 0 19 chr12 15754511 15754649 -128031806 + AluSq SINE Alu 1 140 -173 2138 122 0 0 chr12 15754649 15754945 -128031510 + AluSc SINE Alu 1 296 -13 2308 84 0 19 chr12 15754945 15755117 -128031338 + AluSq SINE Alu 140 305 -8 25 75 0 0 chr12 15755486 15755539 -128030916 + AT_rich Low_complexity Low_complexity 1 53 0 1591 193 0 7 chr12 15756228 15756508 -128029947 + AluJo SINE Alu 1 278 -34 318 127 42 0 chr12 15756521 15756592 -128029863 + GA-rich Low_complexity Low_complexity 2 75 0 271 264 23 58 chr12 15756654 15756741 -128029714 + MIR SINE MIR 20 103 -105 2089 128 0 0 chr12 15757834 15758145 -128028310 + AluSx SINE Alu 1 311 0 184 281 125 0 chr12 15758941 15759005 -128027450 + MER5C DNA MER1_type 1 72 -252 2657 10 0 0 chr12 15759196 15759489 -128026966 + AluYa5 SINE Alu 1 293 -18 2576 156 33 15 chr12 15759821 15760275 -128026180 - MLT1C LTR MaLR -4 463 2 240 364 49 28 chr12 15760705 15760848 -128025607 - MIR3 SINE MIR -62 146 1 1891 152 0 7 chr12 15760973 15761262 -128025193 + AluSx SINE Alu 1 287 -25 432 0 0 0 chr12 15761265 15761313 -128025142 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 15761826 15761851 -128024604 + AT_rich Low_complexity Low_complexity 1 25 0 4309 159 52 54 chr12 15762035 15762912 -128023543 - L1MB5 LINE L1 0 6174 5289 2360 63 10 10 chr12 15762912 15763213 -128023242 - AluY SINE Alu -10 301 1 4309 159 52 54 chr12 15763213 15763360 -128023095 - L1MB5 LINE L1 -885 5289 5143 1169 232 60 6 chr12 15763358 15763707 -128022748 - L1M4c LINE L1 -3911 2473 2106 * 2158 118 0 0 chr12 15764297 15764585 -128021870 + AluSx SINE Alu 1 288 -24 459 351 96 6 chr12 15764841 15765174 -128021281 + L1M4 LINE L1 3803 4165 -1981 363 335 138 18 chr12 15765215 15765555 -128020900 + L1M4 LINE L1 4258 4638 -1508 2313 94 3 0 chr12 15766415 15766713 -128019742 - AluSg SINE Alu -11 299 1 244 156 0 0 chr12 15766808 15766853 -128019602 - Alu SINE Alu 0 302 258 406 148 0 0 chr12 15766853 15766914 -128019541 - AluS SINE Alu -248 61 1 2382 97 0 0 chr12 15767562 15767872 -128018583 - AluSx SINE Alu -2 310 1 2145 119 10 0 chr12 15768703 15769005 -128017450 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 15769483 15769512 -128016943 + AT_rich Low_complexity Low_complexity 1 29 0 869 192 17 109 chr12 15769648 15769950 -128016505 - L1MD2 LINE L1 -56 6303 6030 6776 191 55 40 chr12 15769974 15772233 -128014222 - L1M3 LINE L1 -410 5585 3286 1154 161 124 5 chr12 15772238 15772456 -128013999 - AluSx SINE Alu -25 287 44 3629 257 68 35 chr12 15772456 15775054 -128011401 - L1M3 LINE L1 -2624 3346 634 2129 112 0 0 chr12 15775054 15775349 -128011106 - AluSq SINE Alu -18 295 1 3629 257 68 35 chr12 15775349 15775599 -128010856 - L1M3 LINE L1 -5336 634 394 263 346 47 34 chr12 15775942 15776176 -128010279 - L1M3 LINE L1 -5647 244 8 2066 105 10 23 chr12 15776321 15776626 -128009829 + AluSx SINE Alu 1 301 -11 1724 167 0 13 chr12 15777007 15777313 -128009142 - AluJo SINE Alu -10 302 1 286 259 0 0 chr12 15777578 15777636 -128008819 + L2 LINE L2 3256 3313 0 563 228 39 31 chr12 15778869 15778996 -128007459 + FLAM_A SINE Alu 2 129 -4 4498 191 61 82 chr12 15779055 15779237 -128007218 - Charlie1a DNA MER1_type -1307 1454 1270 2048 119 3 7 chr12 15779237 15779531 -128006924 + AluSx SINE Alu 1 293 -19 4498 191 61 82 chr12 15779531 15779970 -128006485 - Charlie1a DNA MER1_type -1491 1270 823 1643 181 0 3 chr12 15779970 15780262 -128006193 + AluJb SINE Alu 7 297 -15 4498 191 61 82 chr12 15780262 15781124 -128005331 - Charlie1a DNA MER1_type -1938 823 1 21 71 0 0 chr12 15781567 15781609 -128004846 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 15833184 15833219 -127953236 + AT_rich Low_complexity Low_complexity 1 35 0 631 187 45 32 chr12 15833341 15833496 -127952959 + MER103 DNA DNA 1 157 -9 482 83 0 0 chr12 15833582 15833642 -127952813 + AluJb SINE Alu 79 138 -174 315 230 26 44 chr12 15834550 15834663 -127951792 - MER103 DNA DNA -43 123 13 1181 129 56 35 chr12 15835816 15836048 -127950407 + L1MA8 LINE L1 6051 6287 -4 2125 114 41 6 chr12 15836768 15837085 -127949370 - MLT2A1 LTR ERVL -10 434 107 1268 103 71 0 chr12 15837083 15837267 -127949188 - MLT2A2 LTR ERVL -256 197 1 * 12911 74 21 2 chr12 15837267 15838933 -127947522 - HERVL-A2 LTR ERVL 0 5654 3958 * 23974 89 10 3 chr12 15838929 15842654 -127943801 - HERVL-A2 LTR ERVL -1798 3856 1 275 152 0 0 chr12 15842656 15842705 -127943750 - MLT2A1 LTR ERVL -6 447 390 2581 102 32 25 chr12 15842754 15843155 -127943300 - MLT2A1 LTR ERVL -40 404 1 42413 89 11 1 chr12 15843155 15848753 -127937702 - HERVL-A1 LTR ERVL 0 5654 1 332 122 0 0 chr12 15848755 15848804 -127937651 - MLT2A1 LTR ERVL -6 438 390 287 200 0 0 chr12 15848807 15848877 -127937578 + L1MC4 LINE L1 6640 6709 -1333 347 149 39 61 chr12 15848889 15849070 -127937385 + (TA)n Simple_repeat Simple_repeat 1 177 0 2828 71 22 51 chr12 15849095 15849155 -127937300 - MLT2A1 LTR ERVL -45 399 339 2274 115 0 0 chr12 15849155 15849460 -127936995 + AluSx SINE Alu 1 305 -7 2828 71 22 51 chr12 15849460 15849810 -127936645 - MLT2A1 LTR ERVL -105 339 1 869 282 49 51 chr12 15850269 15850659 -127935796 - HAL1 LINE L1 -589 1918 1530 2292 102 3 0 chr12 15853356 15853650 -127932805 - AluSq SINE Alu -18 295 1 1206 110 6 0 chr12 15854178 15854342 -127932113 + AluSp SINE Alu 132 296 -17 22 56 0 0 chr12 15855209 15855245 -127931210 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr12 15856752 15856779 -127929676 + AT_rich Low_complexity Low_complexity 1 27 0 192 97 0 0 chr12 15857033 15857064 -127929391 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 15857126 15857149 -127929306 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr12 15857293 15857322 -127929133 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 201 144 33 chr12 15857802 15858019 -127928436 - MLT1J2 LTR MaLR -174 276 23 2214 113 0 0 chr12 15858562 15858854 -127927601 - AluSq SINE Alu -21 292 1 474 286 174 15 chr12 15858987 15859183 -127927272 + MIR SINE MIR 34 260 -2 21 0 0 0 chr12 15859611 15859632 -127926823 + AT_rich Low_complexity Low_complexity 1 21 0 486 228 296 0 chr12 15859949 15860111 -127926344 + MER63A DNA MER1_type 1 210 0 533 268 132 24 chr12 15860331 15860536 -127925919 - MIR SINE MIR -11 251 25 203 348 98 9 chr12 15862059 15862171 -127924284 + MIR SINE MIR 20 141 -67 665 294 69 10 chr12 15862682 15862886 -127923569 + MIR SINE MIR 26 241 -21 1750 183 0 3 chr12 15862991 15863291 -127923164 + AluSx SINE Alu 1 299 -13 307 253 85 69 chr12 15863297 15863451 -127923004 - MIR SINE MIR -58 150 42 311 315 75 34 chr12 15863550 15863696 -127922759 + MIR SINE MIR 91 242 -20 239 203 174 14 chr12 15864228 15864297 -127922158 + L2 LINE L2 2596 2675 -639 647 255 65 10 chr12 15864431 15864631 -127921824 - MER46C DNA MER2_type -1 337 127 1770 108 27 12 chr12 15864654 15864912 -127921543 + AluSx SINE Alu 35 296 -16 359 226 122 70 chr12 15865114 15865229 -127921226 - MIR SINE MIR -122 140 20 191 280 240 10 chr12 15865368 15865468 -127920987 + L2 LINE L2 3142 3264 -8 2091 129 7 0 chr12 15866657 15866952 -127919503 - AluSx SINE Alu -15 297 1 1220 206 21 4 chr12 15867292 15867530 -127918925 + MLT1A1 LTR MaLR 122 363 -2 317 205 98 36 chr12 15867533 15867645 -127918810 + MER113 DNA MER1_type? 8 126 -395 470 186 25 17 chr12 15867679 15867797 -127918658 - L1MA7 LINE L1 -3 6288 6170 365 221 165 25 chr12 15868064 15868222 -127918233 + MIR3 SINE MIR 23 202 -6 2580 50 0 0 chr12 15868285 15868583 -127917872 - AluY SINE Alu -13 298 1 209 310 17 0 chr12 15868608 15868666 -127917789 - MER91 DNA MER1_type 0 196 138 884 143 0 0 chr12 15869247 15869373 -127917082 - FLAM_C SINE Alu -3 130 5 1812 84 98 40 chr12 15870275 15870550 -127915905 + AluSx SINE Alu 1 291 -21 2389 89 0 0 chr12 15870553 15870856 -127915599 + AluSg SINE Alu 1 303 -7 223 262 214 29 chr12 15870946 15871049 -127915406 + MER5B DNA MER1_type 22 143 -35 2117 125 0 0 chr12 15871261 15871556 -127914899 + AluSx SINE Alu 1 295 -17 1765 161 7 7 chr12 15871647 15871952 -127914503 - AluJo SINE Alu -7 305 1 209 270 0 127 chr12 15872341 15872403 -127914052 + MIR SINE MIR 150 190 -72 2297 107 0 16 chr12 15872403 15872720 -127913735 + AluSx SINE Alu 1 312 0 209 270 0 127 chr12 15872720 15872783 -127913672 + MIR SINE MIR 190 259 -3 232 295 26 0 chr12 15873207 15873285 -127913170 - L2 LINE L2 -2 3311 3232 224 306 56 14 chr12 15873314 15873386 -127913069 - L2 LINE L2 -167 3105 3031 345 293 113 58 chr12 15873511 15873667 -127912788 + L1ME LINE L1 928 1074 -5873 2053 167 55 39 chr12 15873667 15873843 -127912612 + MLT1B LTR MaLR 1 173 -217 2247 107 3 0 chr12 15873843 15874142 -127912313 + AluY SINE Alu 1 300 -11 2053 167 55 39 chr12 15874142 15874349 -127912106 + MLT1B LTR MaLR 173 390 0 345 293 113 58 chr12 15874349 15874592 -127911863 + L1ME LINE L1 1074 1349 -5598 288 290 33 90 chr12 15874746 15874991 -127911464 + L1ME LINE L1 1207 1437 -5510 1818 305 20 49 chr12 15874992 15875691 -127910764 + L1MA6 LINE L1 4 682 -6486 3011 213 72 20 chr12 15875987 15876733 -127909722 + L1MA6 LINE L1 1762 2546 -4622 8464 164 30 6 chr12 15876734 15878302 -127908153 + L1MA6 LINE L1 4380 5984 -1183 4148 147 18 3 chr12 15878302 15878957 -127907498 + L1MA6 LINE L1 6652 7321 0 646 170 0 0 chr12 15879044 15879156 -127907299 + L1MA6 LINE L1 6093 6204 -96 327 200 0 0 chr12 15879153 15879213 -127907242 - L1MA6 LINE L1 -61 6239 6180 * 930 262 38 65 chr12 15879211 15879485 -127906970 + L1ME LINE L1 1396 1676 -5281 2150 122 3 0 chr12 15879485 15879818 -127906637 + AluSq SINE Alu 1 295 -18 930 262 38 65 chr12 15879818 15880148 -127906307 + L1ME LINE L1 1676 2142 -4815 375 23 0 0 chr12 15880187 15880231 -127906224 + (CA)n Simple_repeat Simple_repeat 2 45 0 947 261 42 70 chr12 15880234 15880802 -127905653 + L1ME LINE L1 2579 3130 -4008 2355 95 3 0 chr12 15881195 15881499 -127904956 + AluSp SINE Alu 1 305 -8 2545 251 89 88 chr12 15882331 15883546 -127902909 + L1ME LINE L1 3082 4294 -2663 915 191 0 0 chr12 15883546 15883698 -127902757 + FRAM SINE Alu 1 145 -31 239 0 0 31 chr12 15883702 15883734 -127902721 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2545 251 89 88 chr12 15883734 15884442 -127902013 + L1ME LINE L1 4296 5166 -1791 1767 241 90 28 chr12 15884442 15884974 -127901481 + MLT1F1 LTR MaLR 1 565 -2 2545 251 89 88 chr12 15884974 15885195 -127901260 + L1ME LINE L1 5166 5385 -1572 212 0 36 0 chr12 15885499 15885527 -127900928 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1536 166 18 14 chr12 15886138 15886421 -127900034 - AluSx SINE Alu -15 297 14 1601 198 3 17 chr12 15888367 15888665 -127897790 + AluJo SINE Alu 1 294 -18 2451 58 3 0 chr12 15889038 15889332 -127897123 - AluY SINE Alu -2 309 15 293 267 89 10 chr12 15889708 15889809 -127896646 - L2 LINE L2 0 3313 3205 206 338 0 13 chr12 15889838 15889915 -127896540 + L2 LINE L2 3234 3309 -4 2021 134 0 10 chr12 15890518 15890823 -127895632 + AluSx SINE Alu 1 302 -10 2287 102 0 0 chr12 15891311 15891614 -127894841 + AluSx SINE Alu 1 303 -9 1074 201 53 5 chr12 15891793 15892002 -127894453 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr12 15892280 15892301 -127894154 + AT_rich Low_complexity Low_complexity 1 21 0 678 282 93 53 chr12 15892559 15892679 -127893776 - L1MC4a LINE L1 -1884 5924 5810 2104 112 3 3 chr12 15892679 15892998 -127893457 - AluSq SINE Alu 0 319 1 678 282 93 53 chr12 15892998 15893231 -127893224 - L1MC4a LINE L1 -1998 5810 5556 1949 130 18 0 chr12 15893248 15893549 -127892906 + AluSx SINE Alu 1 306 0 305 250 83 0 chr12 15893556 15893652 -127892803 - L1MC4a LINE L1 -2301 5507 5404 33 56 0 0 chr12 15893913 15893967 -127892488 + AT_rich Low_complexity Low_complexity 1 54 0 2113 140 0 0 chr12 15894008 15894301 -127892154 + AluSx SINE Alu 1 293 -19 236 186 82 52 chr12 15894333 15894430 -127892025 - L1MEd LINE L1 -4320 1809 1710 * 306 244 23 0 chr12 15894385 15894471 -127891984 + L1MC4 LINE L1 6615 6702 -1340 229 65 0 0 chr12 15894520 15894566 -127891889 - LTR66 LTR ERVL -171 439 394 232 48 48 0 chr12 15894595 15894637 -127891818 + (TA)n Simple_repeat Simple_repeat 1 44 0 1903 62 0 0 chr12 15897270 15897497 -127888958 + AluY SINE Alu 1 227 -84 23 33 0 0 chr12 15897500 15897530 -127888925 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr12 15897739 15897788 -127888667 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr12 15897902 15897937 -127888518 + AT_rich Low_complexity Low_complexity 1 35 0 1903 132 7 30 chr12 15897942 15898246 -127888209 + AluSg SINE Alu 1 297 -13 440 319 86 41 chr12 15898344 15898689 -127887766 - L1MEd LINE L1 -790 1700 1372 2105 128 0 0 chr12 15898689 15898978 -127887477 - AluSx SINE Alu -23 289 1 440 319 86 41 chr12 15898978 15899494 -127886961 - L1MEd LINE L1 -1118 1372 689 225 132 0 0 chr12 15899509 15899547 -127886908 + (TC)n Simple_repeat Simple_repeat 2 39 0 1917 157 16 0 chr12 15900545 15900851 -127885604 + AluSx SINE Alu 1 311 -1 1049 209 47 14 chr12 15901038 15901249 -127885206 + MER20 DNA MER1_type 1 218 -1 2231 126 3 0 chr12 15901375 15901684 -127884771 - AluSx SINE Alu -2 310 1 387 0 0 0 chr12 15901685 15901728 -127884727 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 403 104 13 chr12 15901919 15902073 -127884382 + MIR SINE MIR 2 169 -93 711 283 73 0 chr12 15902383 15902602 -127883853 + MIR SINE MIR 27 261 -1 2430 100 0 0 chr12 15902679 15902990 -127883465 + AluSx SINE Alu 1 311 -1 2161 114 3 0 chr12 15904174 15904472 -127881983 - AluSp SINE Alu -14 299 1 207 0 0 0 chr12 15904900 15904923 -127881532 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1166 168 10 20 chr12 15905050 15905102 -127881353 + AluJo SINE Alu 84 135 -171 2318 88 7 0 chr12 15905102 15905398 -127881057 + AluSp SINE Alu 1 298 -15 1166 168 10 20 chr12 15905398 15905570 -127880885 + AluJo SINE Alu 135 306 0 2111 117 7 0 chr12 15905587 15905877 -127880578 + AluSg SINE Alu 1 292 -18 823 182 0 8 chr12 15907124 15907256 -127879199 + AluJo SINE Alu 2 132 -180 950 160 21 0 chr12 15907386 15907530 -127878925 + AluJo SINE Alu 137 283 -19 1096 93 0 182 chr12 15908238 15908474 -127877981 - 7SK RNA RNA 0 193 1 294 292 52 0 chr12 15908984 15909080 -127877375 - L2 LINE L2 -6 3266 3166 205 331 160 14 chr12 15909080 15909367 -127877088 + L2 LINE L2 1776 2104 -1210 2061 106 3 3 chr12 15909761 15910071 -127876384 + AluSp SINE Alu 2 311 0 506 325 159 31 chr12 15910091 15910506 -127875949 + L2 LINE L2 2804 3271 -1 358 257 62 28 chr12 15910647 15910791 -127875664 - L2 LINE L2 -832 2482 2334 1218 144 6 0 chr12 15910882 15911062 -127875393 - AluSg/x SINE Alu -20 292 112 202 331 8 87 chr12 15911466 15911593 -127874862 + L2 LINE L2 3136 3252 -20 24 53 0 0 chr12 15911677 15911715 -127874740 + AT_rich Low_complexity Low_complexity 1 38 0 1514 163 4 4 chr12 15911736 15911994 -127874461 - AluSq SINE Alu -53 260 3 729 300 57 12 chr12 15912143 15912549 -127873906 + L1ME2 LINE L1 5422 5853 -311 1933 88 19 0 chr12 15912856 15913119 -127873336 - AluY SINE Alu -22 289 22 270 170 4 178 chr12 15913452 15913711 -127872744 + L1MA3 LINE L1 5837 6050 -255 957 89 0 0 chr12 15913840 15913963 -127872492 - AluSp SINE Alu -190 123 1 2172 111 3 16 chr12 15913997 15914304 -127872151 + AluSp SINE Alu 1 303 -10 5432 106 20 30 chr12 15914315 15915144 -127871311 + L1PA13 LINE L1 5343 6163 0 1603 113 0 0 chr12 15915126 15915355 -127871100 + L1P4 LINE L1 5594 5822 -346 * 203 0 37 0 chr12 15916612 15916639 -127869816 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 755 156 0 0 chr12 15916639 15916748 -127869707 - FRAM SINE Alu -28 148 40 28 0 0 0 chr12 15917095 15917123 -127869332 + AT_rich Low_complexity Low_complexity 1 28 0 2382 84 3 10 chr12 15917143 15917454 -127869001 - AluSp SINE Alu -4 309 1 283 256 91 16 chr12 15918060 15918181 -127868274 - LTR16C LTR ERVL -63 428 299 2237 98 3 7 chr12 15918853 15919150 -127867305 - AluSp SINE Alu -17 296 1 2049 135 3 7 chr12 15919471 15919774 -127866681 + AluSx SINE Alu 1 302 -10 1982 146 7 0 chr12 15920532 15920833 -127865622 + AluSx SINE Alu 1 303 -9 562 282 27 0 chr12 15920962 15921111 -127865344 - MIR SINE MIR -79 183 31 1098 214 159 31 chr12 15921251 15921508 -127864947 + AluJo SINE Alu 1 290 -12 1922 113 4 0 chr12 15922480 15922737 -127863718 + AluSx SINE Alu 3 260 -52 186 73 36 73 chr12 15922740 15922795 -127863660 + (TAAAAA)n Simple_repeat Simple_repeat 3 55 0 202 331 8 87 chr12 15922880 15923007 -127863448 - L2 LINE L2 -20 3252 3136 207 0 0 0 chr12 15923866 15923889 -127862566 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 262 260 125 10 chr12 15923980 15924084 -127862371 + MIR SINE MIR 60 175 -87 23 0 0 0 chr12 15924084 15924107 -127862348 + AT_rich Low_complexity Low_complexity 1 23 0 2069 101 10 3 chr12 15924109 15924405 -127862050 + AluSq SINE Alu 2 299 -14 21 36 0 0 chr12 15924839 15924867 -127861588 + GC_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr12 15924907 15924959 -127861496 + (CAG)n Simple_repeat Simple_repeat 1 52 0 21 36 0 0 chr12 15924959 15924987 -127861468 + GC_rich Low_complexity Low_complexity 1 28 0 2381 49 7 0 chr12 15925891 15926201 -127860254 + AluY SINE Alu 1 312 0 683 193 0 0 chr12 15926518 15926632 -127859823 + FLAM_C SINE Alu 3 116 -17 23 0 0 0 chr12 15926632 15926655 -127859800 + AT_rich Low_complexity Low_complexity 1 23 0 390 155 190 92 chr12 15927094 15927236 -127859219 - L2 LINE L2 0 3313 3158 917 123 198 27 chr12 15927241 15927428 -127859027 - MER20 DNA MER1_type 0 219 1 3019 92 2 8 chr12 15927514 15928108 -127858347 + MER4A LTR ERV1 7 664 0 253 197 33 33 chr12 15928266 15928327 -127858128 + ERVL LTR ERVL 4911 4971 -793 2132 129 0 3 chr12 15928450 15928752 -127857703 + AluSx SINE Alu 5 305 -7 349 280 50 50 chr12 15928808 15928990 -127857465 + ERVL LTR ERVL 5206 5387 -267 861 117 8 16 chr12 15929105 15929233 -127857222 - FLAM_C SINE Alu -3 140 14 716 278 29 19 chr12 15929545 15929739 -127856716 - MLT1J2 LTR MaLR 0 450 255 618 184 37 22 chr12 15929739 15929875 -127856580 - MER119 DNA MER1_type 0 583 446 250 264 97 0 chr12 15929868 15929940 -127856515 - MER119 DNA MER1_type -449 134 56 * 25 31 0 0 chr12 15930115 15930147 -127856308 + AT_rich Low_complexity Low_complexity 1 32 0 2004 116 7 27 chr12 15930147 15930439 -127856016 - AluSx SINE Alu -26 286 1 281 252 19 84 chr12 15930455 15930610 -127855845 - MLT1J LTR MaLR -305 180 1 2140 118 0 0 chr12 15931392 15931700 -127854755 + AluSg SINE Alu 3 310 0 757 163 0 16 chr12 15931840 15931969 -127854486 + FLAM_C SINE Alu 1 127 -6 1532 184 7 39 chr12 15933010 15933126 -127853329 + AluJo SINE Alu 1 119 -193 186 43 0 0 chr12 15933126 15933149 -127853306 + (CA)n Simple_repeat Simple_repeat 2 24 0 1532 184 7 39 chr12 15933149 15933341 -127853114 + AluJo SINE Alu 119 299 -13 468 250 19 0 chr12 15934208 15934312 -127852143 + MER45 DNA AcHobo 3 108 -932 660 210 48 0 chr12 15934312 15934436 -127852019 - AluJb SINE Alu -52 260 131 285 102 0 0 chr12 15934471 15934520 -127851935 + Alu SINE Alu 252 300 0 2044 101 49 7 chr12 15935017 15935168 -127851287 - AluSg SINE Alu -10 300 157 180 0 0 0 chr12 15935168 15935188 -127851267 + (TA)n Simple_repeat Simple_repeat 1 20 0 2044 101 49 7 chr12 15935188 15935324 -127851131 - AluSg SINE Alu -153 157 1 2011 127 25 0 chr12 15935695 15935979 -127850476 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr12 15935979 15936003 -127850452 + AT_rich Low_complexity Low_complexity 1 24 0 624 152 0 0 chr12 15936215 15936320 -127850135 + FRAM SINE Alu 68 172 -4 646 165 0 0 chr12 15936623 15936720 -127849735 - FLAM_A SINE Alu -44 98 2 25 0 0 0 chr12 15936765 15936790 -127849665 + AT_rich Low_complexity Low_complexity 1 25 0 2035 117 43 0 chr12 15936860 15937142 -127849313 - AluSx SINE Alu -18 294 1 1989 121 13 48 chr12 15937142 15937320 -127849135 - AluSx SINE Alu -9 303 139 1887 124 10 14 chr12 15937320 15937610 -127848845 - AluSq SINE Alu -24 289 1 1989 121 13 48 chr12 15937610 15937745 -127848710 - AluSx SINE Alu -173 139 1 640 179 60 7 chr12 15937797 15937948 -127848507 + MER76 LTR ERV 530 688 0 22 0 0 0 chr12 15937984 15938006 -127848449 + AT_rich Low_complexity Low_complexity 1 22 0 346 351 123 32 chr12 15938012 15938263 -127848192 - L2 LINE L2 -5 3267 2994 16372 126 43 55 chr12 15938353 15938825 -127847630 - Tigger3(Golem) DNA MER2_type 0 3029 2553 1911 125 36 4 chr12 15938825 15939104 -127847351 + AluSq SINE Alu 1 288 -25 207 0 0 0 chr12 15939107 15939130 -127847325 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 16372 126 43 55 chr12 15939130 15939641 -127846814 - Tigger3(Golem) DNA MER2_type -478 2551 2036 2184 118 0 3 chr12 15939641 15939945 -127846510 - AluSq SINE Alu -10 303 1 16372 126 43 55 chr12 15939945 15940694 -127845761 - Tigger3(Golem) DNA MER2_type -993 2036 1280 2120 113 30 3 chr12 15940694 15940994 -127845461 - AluSq SINE Alu -5 308 1 16372 126 43 55 chr12 15940994 15941385 -127845070 - Tigger3(Golem) DNA MER2_type -1749 1280 886 2168 111 3 0 chr12 15941385 15941674 -127844781 - AluSp SINE Alu -23 290 1 16372 126 43 55 chr12 15941674 15942264 -127844191 - Tigger3(Golem) DNA MER2_type -2143 886 347 2230 102 0 0 chr12 15942264 15942549 -127843906 - AluSx SINE Alu -27 285 1 16372 126 43 55 chr12 15942549 15942892 -127843563 - Tigger3(Golem) DNA MER2_type -2682 347 1 279 246 15 15 chr12 15942899 15942964 -127843491 - MER2 DNA MER2_type -1 344 280 1007 150 10 45 chr12 15942990 15943190 -127843265 - MER2 DNA MER2_type -134 211 19 305 276 46 0 chr12 15943213 15943300 -127843155 - L1MC4 LINE L1 -1339 6703 6613 264 234 0 0 chr12 15943301 15943365 -127843090 + (TA)n Simple_repeat Simple_repeat 2 65 0 310 221 0 63 chr12 15943372 15943467 -127842988 - L1MC4 LINE L1 -1340 6702 6614 282 292 0 0 chr12 15943473 15943651 -127842804 + (TA)n Simple_repeat Simple_repeat 2 179 0 314 276 46 0 chr12 15943657 15943744 -127842711 - L1MC4 LINE L1 -1339 6703 6613 345 297 0 0 chr12 15943765 15943856 -127842599 - L1MC4 LINE L1 -1339 6703 6613 363 241 46 0 chr12 15943869 15943956 -127842499 - L1MC4 LINE L1 -1339 6703 6613 261 226 26 0 chr12 15943959 15944074 -127842381 + (TA)n Simple_repeat Simple_repeat 1 118 0 2023 134 3 0 chr12 15944211 15944522 -127841933 + AluSx SINE Alu 1 312 0 1020 156 0 0 chr12 15944832 15944992 -127841463 - AluSg/x SINE Alu -13 299 140 1819 168 7 0 chr12 15945352 15945638 -127840817 - AluJb SINE Alu -24 288 1 707 176 0 16 chr12 15945652 15945777 -127840678 - FLAM_C SINE Alu -9 134 12 5656 142 100 40 chr12 15945913 15947118 -127839337 - MER52C LTR ERV1 0 1278 1 2004 103 0 0 chr12 15947363 15947625 -127838830 + AluSx SINE Alu 35 296 -16 187 211 0 0 chr12 15948260 15948298 -127838157 + MER5C DNA MER1_type 87 124 -200 312 168 84 42 chr12 15948321 15948416 -127838039 + MER5C DNA MER1_type 226 324 0 2162 101 10 3 chr12 15948428 15948725 -127837730 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 15949260 15949281 -127837174 + AT_rich Low_complexity Low_complexity 1 21 0 301 281 39 51 chr12 15949657 15949913 -127836542 - HAL1 LINE L1 -10 2497 2245 398 205 0 0 chr12 15950082 15950160 -127836295 - L1MD3 LINE L1 -348 7647 7570 1799 103 22 7 chr12 15950163 15950435 -127836020 - L1PA13 LINE L1 -3 6811 6536 18511 175 17 25 chr12 15950437 15950649 -127835806 - L1PA13 LINE L1 -458 6354 6142 2026 148 6 3 chr12 15950649 15950960 -127835495 - AluSx SINE Alu 0 312 1 18511 175 17 25 chr12 15950960 15951431 -127835024 - L1PA13 LINE L1 -670 6142 5669 2163 120 0 10 chr12 15951431 15951739 -127834716 + AluSx SINE Alu 1 305 -7 18511 175 17 25 chr12 15951739 15952323 -127834132 - L1PA13 LINE L1 -1143 5669 5082 2072 140 14 0 chr12 15952323 15952615 -127833840 - AluSx SINE Alu -16 296 1 18511 175 17 25 chr12 15952615 15955927 -127830528 - L1PA13 LINE L1 -1730 5082 1817 2294 125 0 0 chr12 15955927 15956231 -127830224 - AluSx SINE Alu 0 312 9 18511 175 17 25 chr12 15956231 15956299 -127830156 - L1PA13 LINE L1 -4995 1817 1750 1499 151 34 0 chr12 15956294 15956532 -127829923 - L1PA13 LINE L1 -6540 247 2 * 3366 233 60 42 chr12 15956543 15957218 -127829237 - L1MC4a LINE L1 -404 7404 6742 1650 154 39 51 chr12 15957218 15957530 -127828925 + AluJb SINE Alu 1 308 -4 3366 233 60 42 chr12 15957530 15958230 -127828225 - L1MC4a LINE L1 -1066 6742 6035 1844 180 0 10 chr12 15958230 15958541 -127827914 - AluJb SINE Alu -2 310 3 3366 233 60 42 chr12 15958541 15958743 -127827712 - L1MC4a LINE L1 -1773 6035 5838 6332 213 70 8 chr12 15958766 15961132 -127825323 - L1MA4 LINE L1 -5 6295 3602 183 42 0 0 chr12 15961132 15961156 -127825299 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6332 213 70 8 chr12 15961156 15961920 -127824535 - L1MA4 LINE L1 -2698 3602 2887 1072 282 59 14 chr12 15961920 15962410 -127824045 - L1ME1 LINE L1 -316 6244 5733 830 249 76 30 chr12 15962499 15963019 -127823436 - L1ME1 LINE L1 -4467 2136 1446 * 993 180 15 0 chr12 15963018 15963224 -127823231 - L1 LINE L1 -1193 4953 4745 315 265 42 21 chr12 15963223 15963412 -127823043 - L1ME1 LINE L1 -4954 1586 1394 * 1062 135 11 0 chr12 15963438 15963623 -127822832 - L1M2 LINE L1 -691 7028 6842 12588 197 40 58 chr12 15963656 15963803 -127822652 - L1M2 LINE L1 -746 6819 6671 243 0 0 0 chr12 15963803 15963830 -127822625 + (TG)n Simple_repeat Simple_repeat 2 28 0 12588 197 40 58 chr12 15963830 15967074 -127819381 - L1M2 LINE L1 -894 6671 3783 2284 123 3 0 chr12 15967074 15967376 -127819079 - AluSx SINE Alu -9 303 1 12588 197 40 58 chr12 15967376 15968931 -127817524 - L1M2 LINE L1 -3782 3783 2202 399 412 15 0 chr12 15969198 15969470 -127816985 - L1M2 LINE L1 -5797 1699 1424 191 288 119 0 chr12 15970621 15970680 -127815775 - L2 LINE L2 -49 3223 3158 210 176 40 14 chr12 15972807 15972881 -127813574 + (TA)n Simple_repeat Simple_repeat 2 77 0 429 322 47 6 chr12 15973246 15973417 -127813038 - MER5A DNA MER1_type -1 188 11 1967 161 77 20 chr12 15974116 15974519 -127811936 + MSTB LTR MaLR 1 426 0 203 327 73 74 chr12 15974928 15975191 -127811264 - MIR3 SINE MIR 0 262 1 1588 192 7 33 chr12 15975442 15975749 -127810706 + AluJo SINE Alu 1 299 -13 1689 173 0 0 chr12 15975774 15976046 -127810409 + AluJo SINE Alu 37 308 -4 886 208 126 95 chr12 15977358 15977747 -127808708 + MER57B LTR ERV1 3 434 0 532 305 40 30 chr12 15980250 15980450 -127806005 - MIR3 SINE MIR 0 208 7 1914 154 133 13 chr12 15980829 15981211 -127805244 + MSTA LTR MaLR 1 428 0 2371 95 0 0 chr12 15981378 15981674 -127804781 + AluSq SINE Alu 1 296 -17 31 0 0 0 chr12 15981674 15981705 -127804750 + AT_rich Low_complexity Low_complexity 1 31 0 268 237 87 11 chr12 15982411 15982506 -127803949 + MIR SINE MIR 5 106 -102 2286 89 0 20 chr12 15982547 15982851 -127803604 - AluY SINE Alu -12 299 2 375 253 53 21 chr12 15983126 15983279 -127803176 + L1ME LINE L1 5244 5403 -743 1959 113 67 0 chr12 15983279 15983561 -127802894 + AluSx SINE Alu 3 303 -9 578 255 80 12 chr12 15983641 15983892 -127802563 + L1ME LINE L1 5537 5804 -317 330 249 6 133 chr12 15984449 15984614 -127801841 + MER5A DNA MER1_type 18 161 -28 202 270 6 126 chr12 15984467 15984641 -127801814 - MER5A DNA MER1_type -19 170 18 * 845 189 35 0 chr12 15984722 15984891 -127801564 + MER5B DNA MER1_type 1 175 -3 539 321 64 5 chr12 15985155 15985342 -127801113 - MIR3 SINE MIR -7 201 4 205 311 160 8 chr12 15985513 15985632 -127800823 + MER5A DNA MER1_type 43 179 -10 4434 63 51 5 chr12 15986282 15986889 -127799566 + PABL_A LTR ERV1 26 660 0 308 245 19 38 chr12 15986946 15987052 -127799403 - MER5B DNA MER1_type -3 175 72 589 149 9 0 chr12 15987061 15987168 -127799287 + MER53 DNA DNA 1 108 -81 194 224 52 35 chr12 15987172 15987230 -127799225 - MER5B DNA MER1_type -113 65 7 1926 171 9 6 chr12 15987606 15987946 -127798509 - MER2 DNA MER2_type -2 342 2 7654 23 11 0 chr12 15988450 15989582 -127796873 - L1PA3 LINE L1 0 6155 5019 14291 154 39 17 chr12 15989899 15994026 -127792429 + L1MA4A LINE L1 841 5139 -1866 2110 105 0 14 chr12 15994026 15994321 -127792134 + AluSx SINE Alu 1 291 -21 14291 154 39 17 chr12 15994321 15996208 -127790247 + L1MA4A LINE L1 5139 6983 -22 2151 106 0 26 chr12 15996229 15996541 -127789914 + AluSx SINE Alu 1 304 -8 1261 238 139 26 chr12 15996612 15997065 -127789390 + MLT1D LTR MaLR 1 504 -1 1886 143 19 19 chr12 15997404 15997712 -127788743 + AluJb SINE Alu 5 312 0 209 300 62 25 chr12 15997816 15997896 -127788559 + L2 LINE L2 3189 3271 -1 208 296 19 0 chr12 15998737 15998791 -127787664 + L2 LINE L2 3255 3309 -4 2276 103 0 0 chr12 15998876 15999167 -127787288 + AluSg SINE Alu 1 291 -19 35 0 0 0 chr12 15999185 15999220 -127787235 + AT_rich Low_complexity Low_complexity 1 35 0 365 303 0 0 chr12 16000428 16000517 -127785938 + MIR3 SINE MIR 113 201 -7 187 290 129 32 chr12 16001219 16001312 -127785143 + MIR SINE MIR 59 160 -102 1080 106 0 95 chr12 16001428 16001607 -127784848 + AluSg/x SINE Alu 143 304 -8 1076 146 12 0 chr12 16001960 16002125 -127784330 - AluSg/x SINE Alu -9 303 137 534 176 77 94 chr12 16002221 16002391 -127784064 - MIR SINE MIR 0 262 96 1986 134 0 0 chr12 16003044 16003355 -127783100 - AluSx SINE Alu 0 311 1 241 211 101 9 chr12 16003852 16003961 -127782494 - L1ME4a LINE L1 -125 5996 5878 246 293 236 28 chr12 16003988 16004306 -127782149 - L2 LINE L2 0 3313 2930 368 192 85 67 chr12 16004676 16004854 -127781601 + MER63 DNA MER1_type 27 1062 0 21 36 0 0 chr12 16004959 16004987 -127781468 + AT_rich Low_complexity Low_complexity 1 28 0 395 261 57 90 chr12 16005056 16005162 -127781293 - L1M4 LINE L1 -1820 4326 4218 2062 113 0 3 chr12 16005162 16005479 -127780976 - AluSg SINE Alu 0 316 1 395 261 57 90 chr12 16005479 16005518 -127780937 - L1M4 LINE L1 -1928 4218 4179 2293 138 43 36 chr12 16005518 16005960 -127780495 + MER65A LTR ERV1 1 445 0 395 261 57 90 chr12 16005960 16006023 -127780432 - L1M4 LINE L1 -1967 4179 4123 299 333 54 0 chr12 16006269 16006380 -127780075 + L2 LINE L2 2958 3074 -239 405 269 145 16 chr12 16006700 16006893 -127779562 + L1M4 LINE L1 3693 3910 -2236 21 0 0 0 chr12 16007112 16007133 -127779322 + AT_rich Low_complexity Low_complexity 1 21 0 2277 99 0 0 chr12 16007473 16007765 -127778690 - AluSc SINE Alu -17 292 1 336 215 83 83 chr12 16009316 16009376 -127777079 + L2 LINE L2 3170 3229 -84 2069 136 0 7 chr12 16009376 16009694 -127776761 - AluSx SINE Alu 0 312 1 336 215 83 83 chr12 16009694 16009777 -127776678 + L2 LINE L2 3228 3313 0 243 192 19 0 chr12 16009777 16009829 -127776626 + GA-rich Low_complexity Low_complexity 1 53 0 346 301 16 72 chr12 16010687 16010880 -127775575 - Charlie8 DNA MER1_type -2235 182 1 188 388 41 0 chr12 16010971 16011069 -127775386 + MIR SINE MIR 160 261 -1 858 250 130 61 chr12 16012066 16012442 -127774013 + MER57A LTR ERV1 1 403 0 364 224 60 17 chr12 16013125 16013241 -127773214 + MIR SINE MIR 72 192 -70 1902 121 80 3 chr12 16014042 16014355 -127772100 - MER1B DNA MER1_type 0 337 1 2026 114 59 31 chr12 16014715 16015039 -127771416 + MER1B DNA MER1_type 5 337 0 395 300 53 60 chr12 16015047 16015427 -127771028 - L1ME LINE L1 -524 5638 5262 369 291 137 11 chr12 16015428 16015610 -127770845 - L1ME LINE L1 -885 5261 5057 1973 146 3 0 chr12 16015614 16015908 -127770547 + AluSx SINE Alu 1 295 -17 206 103 0 26 chr12 16016063 16016102 -127770353 + (TATAA)n Simple_repeat Simple_repeat 5 42 0 2307 93 7 3 chr12 16016262 16016562 -127769893 - AluSg SINE Alu -9 301 1 549 317 35 25 chr12 16017581 16017783 -127768672 + MIR3 SINE MIR 2 205 -3 376 262 0 99 chr12 16017894 16018042 -127768413 - MIR SINE MIR -72 136 3 28 0 0 0 chr12 16018384 16018412 -127768043 + AT_rich Low_complexity Low_complexity 1 28 0 2029 138 21 0 chr12 16018661 16018952 -127767503 - AluSx SINE Alu -15 297 1 2247 98 7 7 chr12 16019613 16019918 -127766537 + AluSx SINE Alu 1 305 -7 260 217 70 26 chr12 16020288 16020403 -127766052 + HAL1 LINE L1 2240 2359 -148 2224 109 3 3 chr12 16020500 16020802 -127765653 - AluSq SINE Alu -11 302 1 205 254 73 91 chr12 16020918 16021028 -127765427 + L2 LINE L2 3189 3296 -17 210 286 0 0 chr12 16021456 16021505 -127764950 + (CCA)n Simple_repeat Simple_repeat 1 49 0 33 43 0 0 chr12 16021698 16021745 -127764710 + AT_rich Low_complexity Low_complexity 1 47 0 231 343 97 22 chr12 16021910 16022044 -127764411 - MIR3 SINE MIR -11 197 54 321 26 0 0 chr12 16022067 16022105 -127764350 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2217 93 0 13 chr12 16022155 16022457 -127763998 + AluSg SINE Alu 5 302 -8 280 341 127 16 chr12 16022466 16022882 -127763573 - L2 LINE L2 -240 3032 2575 * 340 258 113 21 chr12 16022872 16022969 -127763486 + L2 LINE L2 3207 3312 -1 1960 204 27 94 chr12 16023088 16023672 -127762783 - LTR9 LTR ERV1 0 612 75 2237 108 0 6 chr12 16023672 16023986 -127762469 + AluSx SINE Alu 1 312 0 1960 204 27 94 chr12 16023986 16024057 -127762398 - LTR9 LTR ERV1 -537 75 1 509 16 0 0 chr12 16024218 16024279 -127762176 + L1P1 LINE L1 5519 5579 -576 678 221 145 7 chr12 16024925 16025214 -127761241 - L1ME4a LINE L1 -17 6104 5776 1938 142 6 55 chr12 16025214 16025403 -127761052 - AluJo SINE Alu -3 309 141 2242 105 0 0 chr12 16025403 16025688 -127760767 - AluSg SINE Alu -25 285 1 1938 142 6 55 chr12 16025688 16025823 -127760632 - AluJo SINE Alu -171 141 1 1912 166 3 34 chr12 16026415 16026735 -127759720 - AluJb SINE Alu -2 310 1 247 284 45 11 chr12 16027317 16027405 -127759050 - MIR3 SINE MIR -33 175 85 1739 106 31 7 chr12 16027736 16028028 -127758427 + THE1A LTR MaLR 1 299 -56 2234 78 10 0 chr12 16028058 16028364 -127758091 - THE1A LTR MaLR -46 309 1 1711 116 0 0 chr12 16028432 16028657 -127757798 - AluSx SINE Alu -87 225 1 291 333 7 41 chr12 16030504 16030651 -127755804 + MIR SINE MIR 7 148 -114 511 270 81 27 chr12 16030711 16030896 -127755559 - MIR SINE MIR -1 261 67 2181 110 13 7 chr12 16032147 16032457 -127753998 + AluSx SINE Alu 1 312 0 239 250 18 0 chr12 16033542 16033598 -127752857 + MER94 DNA DNA 78 134 0 31 44 0 0 chr12 16034022 16034067 -127752388 + AT_rich Low_complexity Low_complexity 1 45 0 321 260 77 10 chr12 16034626 16034730 -127751725 + L2 LINE L2 3181 3291 -22 2303 99 0 28 chr12 16034777 16035099 -127751356 - AluSq SINE Alu 0 313 1 794 194 0 8 chr12 16035210 16035334 -127751121 - FLAM_A SINE Alu -10 123 1 368 307 45 40 chr12 16035334 16035536 -127750919 - MIR SINE MIR -11 251 49 884 163 0 15 chr12 16036450 16036585 -127749870 - FLAM_C SINE Alu 0 133 1 292 248 158 65 chr12 16037134 16037316 -127749139 - MIR3 SINE MIR -1 207 2 1032 81 0 7 chr12 16037892 16038028 -127748427 - L1PB1 LINE L1 -2 6149 6015 2405 119 5 39 chr12 16039395 16039781 -127746674 + THE1C LTR MaLR 1 373 -2 222 171 24 0 chr12 16040643 16040684 -127745771 - L2 LINE L2 -8 3264 3223 * 234 208 21 0 chr12 16040650 16040698 -127745757 - MIR SINE MIR -10 252 204 217 257 135 14 chr12 16040873 16040947 -127745508 + L2 LINE L2 3189 3271 -1 656 114 0 50 chr12 16041743 16041883 -127744572 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1457 204 6 22 chr12 16041883 16042196 -127744259 - AluJo SINE Alu -4 308 1 185 275 100 38 chr12 16042290 16042370 -127744085 + L2 LINE L2 3170 3254 -18 214 198 81 47 chr12 16042888 16042974 -127743481 - MIR SINE MIR -39 223 135 188 288 0 15 chr12 16044432 16044498 -127741957 + MER5A DNA MER1_type 97 161 -28 1950 153 3 3 chr12 16044557 16044857 -127741598 + AluJb SINE Alu 1 300 -12 183 188 0 0 chr12 16045448 16045496 -127740959 + CT-rich Low_complexity Low_complexity 1 48 0 571 221 0 15 chr12 16045496 16045627 -127740828 - L1MB7 LINE L1 -10 6174 6046 252 216 0 0 chr12 16045818 16045869 -127740586 - MIR SINE MIR -6 256 206 1705 271 104 12 chr12 16045941 16046662 -127739793 - L2 LINE L2 -239 3074 2281 2417 84 3 0 chr12 16047752 16048060 -127738395 - AluY SINE Alu -2 309 1 285 309 36 18 chr12 16048092 16048202 -127738253 + MIR SINE MIR 35 146 -62 267 198 86 49 chr12 16048993 16049074 -127737381 + MIR3 SINE MIR 84 167 -41 * 671 282 19 19 chr12 16049065 16049278 -127737177 - MIR SINE MIR -18 244 32 2011 192 54 54 chr12 16049297 16049785 -127736670 + Charlie1b DNA MER1_type 1 491 -2270 2338 102 0 3 chr12 16049785 16050088 -127736367 + AluSp SINE Alu 1 302 -11 2011 192 54 54 chr12 16050088 16050121 -127736334 + Charlie1b DNA MER1_type 490 522 -1 381 324 22 7 chr12 16050990 16051126 -127735329 - MIR SINE MIR -119 143 6 216 274 16 0 chr12 16051158 16051220 -127735235 + (CAA)n Simple_repeat Simple_repeat 2 64 0 500 331 28 12 chr12 16051220 16051474 -127734981 - MIR SINE MIR -3 259 2 216 326 188 7 chr12 16051555 16051699 -127734756 + MIR SINE MIR 81 250 -12 208 382 65 8 chr12 16051697 16051820 -127734635 - MIR3 SINE MIR -76 132 3 * 21 0 0 0 chr12 16052516 16052537 -127733918 + AT_rich Low_complexity Low_complexity 1 21 0 1687 61 0 0 chr12 16052643 16052840 -127733615 + AluY SINE Alu 105 301 -10 832 174 8 0 chr12 16053044 16053176 -127733279 - FLAM_C SINE Alu 0 133 1 955 56 0 31 chr12 16054140 16054301 -127732154 + (TA)n Simple_repeat Simple_repeat 1 156 0 7562 51 10 0 chr12 16054301 16055231 -127731224 - L1PA7 LINE L1 -19 6135 5204 2487 57 0 25 chr12 16055368 16055720 -127730735 - AluY SINE Alu 0 345 2 571 311 83 14 chr12 16055842 16056305 -127730150 - L2 LINE L2 -199 3073 2561 347 89 0 54 chr12 16056335 16056391 -127730064 + AluJo/FLAM SINE Alu 81 133 -169 1672 181 0 30 chr12 16056393 16056696 -127729759 + AluJo SINE Alu 1 294 -18 347 326 144 6 chr12 16056710 16056891 -127729564 - L2 LINE L2 -786 2528 2323 327 357 67 8 chr12 16057546 16057784 -127728671 - L2 LINE L2 -2532 782 531 22 0 0 0 chr12 16057799 16057821 -127728634 + AT_rich Low_complexity Low_complexity 1 22 0 186 339 16 16 chr12 16058436 16058498 -127727957 - MIR SINE MIR -131 77 16 1207 193 10 82 chr12 16058891 16059196 -127727259 + MLT1A2 LTR MaLR 2 284 -90 476 139 0 47 chr12 16059465 16059551 -127726904 + MLT1A2 LTR MaLR 284 365 0 2266 120 0 3 chr12 16059598 16059906 -127726549 + AluSx SINE Alu 1 307 -5 2347 79 6 13 chr12 16060591 16060906 -127725549 + AluSq SINE Alu 1 313 0 21 0 0 0 chr12 16061067 16061088 -127725367 + AT_rich Low_complexity Low_complexity 1 21 0 519 183 0 0 chr12 16061228 16061310 -127725145 + AluJ/FLAM SINE Alu 6 87 -225 2380 81 0 0 chr12 16061514 16061821 -127724634 + AluY SINE Alu 1 307 -4 326 269 157 0 chr12 16061888 16061996 -127724459 - L2 LINE L2 -1 3312 3188 2494 152 34 7 chr12 16062230 16062637 -127723818 - MSTB LTR MaLR 0 426 9 3591 44 0 70 chr12 16062640 16063122 -127723333 - LTR7 LTR ERV1 -2 448 1 2449 84 50 16 chr12 16063122 16063501 -127722954 - HERVH LTR ERV1 0 7713 7322 1364 119 20 0 chr12 16063499 16063700 -127722755 - HERVH LTR ERV1 -1894 5819 5615 * 2504 175 0 2 chr12 16063728 16064139 -127722316 - HERVH LTR ERV1 -2564 5149 4740 999 149 0 7 chr12 16064138 16064292 -127722163 - HERVH LTR ERV1 -4069 3644 3492 * 874 131 41 0 chr12 16064282 16064427 -127722028 - HERVH LTR ERV1 -4423 3290 3140 * 20819 88 21 13 chr12 16064406 16067376 -127719079 - HERVH LTR ERV1 -4718 2995 1 3629 39 0 70 chr12 16067378 16067860 -127718595 - LTR7 LTR ERV1 -2 448 1 287 337 0 11 chr12 16068747 16068842 -127717613 + MIR SINE MIR 48 141 -121 218 160 0 100 chr12 16069457 16069507 -127716948 + MIR SINE MIR 218 262 0 2690 62 103 0 chr12 16070191 16070530 -127715925 + MER51B LTR ERV1 4 377 0 1880 229 31 84 chr12 16071516 16072158 -127714297 - LTR9 LTR ERV1 0 612 5 473 173 135 0 chr12 16072280 16072384 -127714071 - Charlie1a DNA MER1_type -912 543 426 481 157 10 59 chr12 16072389 16072456 -127713999 - Charlie1a DNA MER1_type -2524 237 175 5160 88 23 42 chr12 16072456 16072594 -127713861 - LTR30 LTR ERV1 0 722 583 2511 54 0 10 chr12 16072594 16072908 -127713547 + AluY SINE Alu 1 311 0 5160 88 23 42 chr12 16072908 16073505 -127712950 - LTR30 LTR ERV1 -139 583 1 481 157 10 59 chr12 16073505 16073539 -127712916 - Charlie1a DNA MER1_type -2586 175 141 1768 132 16 76 chr12 16073539 16073904 -127712551 - MER4A LTR ERV1 0 664 263 561 111 89 0 chr12 16073904 16073994 -127712461 - MER4A LTR ERV1 -566 98 1 506 252 54 34 chr12 16073994 16074130 -127712325 - Charlie1a DNA MER1_type -1315 140 2 471 281 278 7 chr12 16074214 16074516 -127711939 + L2 LINE L2 2930 3313 0 1048 255 47 100 chr12 16074860 16075586 -127710869 - L1M4 LINE L1 -1571 4575 3923 2000 134 0 17 chr12 16075586 16075885 -127710570 - AluSx SINE Alu -14 298 5 1048 255 47 100 chr12 16075885 16076235 -127710220 - L1M4 LINE L1 -2223 3923 3556 255 252 100 43 chr12 16076246 16076456 -127709999 + L1M4 LINE L1 5084 5305 -841 418 236 29 81 chr12 16076617 16076661 -127709794 - L1MC/D LINE L1 -2262 5940 5895 1695 166 48 20 chr12 16076661 16076956 -127709499 - AluJo SINE Alu -9 303 1 418 236 29 81 chr12 16076956 16077085 -127709370 - L1MC/D LINE L1 -2307 5895 5776 28 0 0 0 chr12 16077114 16077142 -127709313 + AT_rich Low_complexity Low_complexity 1 28 0 670 298 90 2 chr12 16077150 16077521 -127708934 - L1M4 LINE L1 -4768 2978 2428 804 209 44 18 chr12 16077526 16077540 -127708915 - L1MC/D LINE L1 -1438 5102 5090 1586 152 11 19 chr12 16077540 16077803 -127708652 - L1PA16 LINE L1 -4 6162 5902 804 209 44 18 chr12 16077803 16078013 -127708442 - L1MC/D LINE L1 -1450 5090 4872 * 5509 131 26 65 chr12 16078009 16078551 -127707904 - L1MA6 LINE L1 -5 6295 5733 1975 141 0 46 chr12 16078551 16078857 -127707598 + AluSx SINE Alu 1 292 -20 5509 131 26 65 chr12 16078857 16078972 -127707483 - L1MA6 LINE L1 -567 5733 5615 2881 13 0 0 chr12 16078972 16079281 -127707174 - AluYa5 SINE Alu -2 309 1 5509 131 26 65 chr12 16079281 16079920 -127706535 - L1MA6 LINE L1 -685 5615 4953 528 59 0 0 chr12 16079920 16079988 -127706467 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2009 127 36 0 chr12 16079989 16080265 -127706190 - AluSx SINE Alu -26 286 1 5509 131 26 65 chr12 16080265 16080314 -127706141 - L1MA6 LINE L1 -1347 4953 4904 746 164 15 67 chr12 16080314 16080448 -127706007 - FLAM_A SINE Alu -6 127 1 5509 131 26 65 chr12 16080448 16080816 -127705639 - L1MA6 LINE L1 -1396 4904 4644 1048 257 50 7 chr12 16080816 16081116 -127705339 - L1M4 LINE L1 -5355 2210 1898 889 294 55 76 chr12 16081679 16082101 -127704354 - L1M4 LINE L1 -5532 1954 1542 2482 127 50 27 chr12 16082110 16082550 -127703905 - LTR7 LTR ERV1 0 450 1 5049 227 45 72 chr12 16082550 16083982 -127702473 - L1MC/D LINE L1 -1650 4890 3537 1797 188 0 7 chr12 16083982 16084291 -127702164 - AluJo SINE Alu -5 307 1 5049 227 45 72 chr12 16084291 16085098 -127701357 - L1MC/D LINE L1 -3003 3537 2709 2179 102 0 3 chr12 16085596 16085917 -127700538 - AluSg SINE Alu 0 320 1 2168 103 10 0 chr12 16085985 16086276 -127700179 - AluSg SINE Alu -16 294 1 24 0 0 0 chr12 16086379 16086403 -127700052 + AT_rich Low_complexity Low_complexity 1 24 0 1659 151 78 9 chr12 16086484 16086828 -127699627 - L1MA7 LINE L1 -28 6263 5896 * 9276 205 54 35 chr12 16086825 16088232 -127698223 - L1MDa LINE L1 -3829 2711 1231 1925 150 10 0 chr12 16088232 16088546 -127697909 - L1MC1 LINE L1 0 6333 6017 9276 205 54 35 chr12 16088546 16089788 -127696667 - L1MDa LINE L1 -5309 1231 14 1907 133 7 0 chr12 16090591 16090870 -127695585 - AluSx SINE Alu -8 304 24 396 0 0 0 chr12 16091214 16091258 -127695197 + (TG)n Simple_repeat Simple_repeat 2 45 0 263 351 54 27 chr12 16091662 16091773 -127694682 - MER5A DNA MER1_type -68 121 8 2911 275 147 31 chr12 16091777 16093084 -127693371 + L2 LINE L2 1460 2917 -397 1583 193 3 69 chr12 16093085 16093474 -127692981 + MLT1A2 LTR MaLR 1 363 -11 634 305 81 38 chr12 16093487 16093644 -127692811 + L2 LINE L2 2917 3066 -247 2266 105 3 0 chr12 16093644 16093940 -127692515 + AluSq SINE Alu 2 298 -15 634 305 81 38 chr12 16093940 16094013 -127692442 + L2 LINE L2 3066 3134 -179 297 75 0 0 chr12 16094013 16094053 -127692402 + (CA)n Simple_repeat Simple_repeat 1 40 0 634 305 81 38 chr12 16094053 16094165 -127692290 + L2 LINE L2 3134 3275 -38 687 68 0 19 chr12 16094213 16094316 -127692139 - L1PA8 LINE L1 0 6172 6072 348 214 0 31 chr12 16094330 16094428 -127692027 - MER31A LTR ERV1 -38 447 353 2129 87 4 51 chr12 16096230 16096710 -127689745 + MER84-int LTR ERV1 4440 4953 -1 3327 106 6 6 chr12 16096710 16097211 -127689244 + MER84 LTR ERVI 1 501 -6 2553 164 56 42 chr12 16097255 16097723 -127688732 + Charlie5 DNA MER1_type 1951 2432 -192 2115 112 7 0 chr12 16097723 16098008 -127688447 - AluSx SINE Alu -13 299 13 2553 164 56 42 chr12 16098008 16098204 -127688251 + Charlie5 DNA MER1_type 2432 2624 0 420 314 130 0 chr12 16098347 16098516 -127687939 + MIR SINE MIR 48 238 -24 861 171 18 30 chr12 16098554 16098718 -127687737 + FRAM SINE Alu 1 162 -14 320 350 36 75 chr12 16098890 16099158 -127687297 - L2 LINE L2 -943 2371 2120 1768 150 0 8 chr12 16099158 16099448 -127687007 + AluSx SINE Alu 18 305 0 320 350 36 75 chr12 16099448 16099567 -127686888 - L2 LINE L2 -1194 2120 1998 3671 85 58 7 chr12 16100444 16100996 -127685459 - LTR19B LTR ERV1 0 580 1 313 256 37 24 chr12 16101413 16101495 -127684960 + MIR3 SINE MIR 109 191 -17 771 294 82 79 chr12 16101914 16102862 -127683593 + HAL1 LINE L1 2 956 -1551 8055 75 4 12 chr12 16102862 16103942 -127682513 - MER11C LTR ERVK 0 1071 1 771 294 82 79 chr12 16103942 16104144 -127682311 + HAL1 LINE L1 956 1156 -1351 24 0 0 0 chr12 16104156 16104180 -127682275 + AT_rich Low_complexity Low_complexity 1 24 0 734 225 132 28 chr12 16104244 16104415 -127682040 + HAL1 LINE L1 1342 1494 -1013 2289 148 75 5 chr12 16104415 16104813 -127681642 + MSTB LTR MaLR 1 426 0 734 225 132 28 chr12 16104813 16104930 -127681525 + HAL1 LINE L1 1494 1660 -847 1003 246 79 27 chr12 16105029 16105472 -127680983 + HAL1 LINE L1 2037 2502 -5 2287 72 48 0 chr12 16105497 16105790 -127680665 + AluY SINE Alu 1 307 -4 228 393 7 7 chr12 16105938 16106088 -127680367 - L2 LINE L2 -1016 2298 2149 409 379 6 12 chr12 16106578 16106747 -127679708 + MIR SINE MIR 13 180 -82 2266 74 17 7 chr12 16106944 16107240 -127679215 - AluSg SINE Alu -11 299 1 288 304 65 28 chr12 16107346 16107560 -127678895 + HAL1 LINE L1 1544 1765 -742 1813 142 6 66 chr12 16107705 16108023 -127678432 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 16108023 16108045 -127678410 + AT_rich Low_complexity Low_complexity 1 22 0 247 267 0 0 chr12 16108110 16108185 -127678270 + T-rich Low_complexity Low_complexity 1 75 0 572 279 0 0 chr12 16108206 16108335 -127678120 - FLAM_A SINE Alu -4 129 1 2144 123 0 13 chr12 16108337 16108646 -127677809 - AluSx SINE Alu -7 305 1 225 306 41 20 chr12 16108647 16108745 -127677710 + L2 LINE L2 2698 2797 -517 354 198 12 12 chr12 16109596 16109682 -127676773 + MLT1J2 LTR MaLR 344 429 -21 2190 76 7 16 chr12 16109817 16110121 -127676334 + AluY SINE Alu 1 301 -10 2354 103 0 0 chr12 16110130 16110441 -127676014 + AluSx SINE Alu 1 311 -1 2310 116 0 3 chr12 16111229 16111539 -127674916 - AluSx SINE Alu -3 309 1 185 111 28 0 chr12 16111612 16111648 -127674807 - L2 LINE L2 -2 3311 3275 439 270 132 21 chr12 16111775 16112064 -127674391 + L1ME4a LINE L1 5563 5883 -238 2104 112 20 3 chr12 16112565 16112870 -127673585 + AluSg SINE Alu 1 310 0 359 133 0 0 chr12 16113186 16113246 -127673209 - L1MA4 LINE L1 -8 6292 6233 528 160 0 0 chr12 16113346 16113440 -127673015 - L1MA4 LINE L1 -70 6230 6137 313 312 69 53 chr12 16113997 16114186 -127672269 + HAL1b LINE L1 586 777 -571 473 322 25 29 chr12 16114586 16114831 -127671624 - MLT1J LTR MaLR -29 482 239 1937 152 3 7 chr12 16115041 16115344 -127671111 + AluJb SINE Alu 6 307 -5 524 105 0 53 chr12 16115812 16115878 -127670577 - MSTC LTR MaLR 0 428 367 2281 114 0 16 chr12 16115878 16116193 -127670262 - AluSq SINE Alu -3 310 1 524 105 0 53 chr12 16116193 16116221 -127670234 - MSTC LTR MaLR -61 367 339 312 120 0 0 chr12 16116223 16116273 -127670182 - MSTC LTR MaLR -378 50 1 2143 125 0 0 chr12 16116491 16116787 -127669668 + AluSg1 SINE Alu 1 296 -13 2062 144 30 25 chr12 16116908 16117270 -127669185 + THE1B LTR MaLR 1 364 0 10485 104 22 29 chr12 16117271 16118861 -127667594 + THE1B-int LTR MaLR 2 1580 0 2279 122 37 8 chr12 16118861 16119215 -127667240 + THE1B LTR MaLR 1 364 0 387 312 95 5 chr12 16119749 16119938 -127666517 - MIR SINE MIR -48 214 9 250 268 37 12 chr12 16120099 16120181 -127666274 + L2 LINE L2 3191 3274 -39 366 291 147 50 chr12 16120823 16121109 -127665346 + L1M4 LINE L1 2734 2991 -3155 1860 126 43 7 chr12 16121109 16121386 -127665069 - AluJb SINE Alu -25 287 1 366 291 147 50 chr12 16121386 16121617 -127664838 + L1M4 LINE L1 2991 3301 -2845 2084 102 27 0 chr12 16121620 16121914 -127664541 + AluSq SINE Alu 1 302 -11 869 142 0 8 chr12 16122257 16122391 -127664064 - FLAM_C SINE Alu 0 133 1 3965 125 15 21 chr12 16122556 16123026 -127663429 + L1PA16 LINE L1 5513 5979 -187 4780 45 9 0 chr12 16123026 16123609 -127662846 + LTR10C LTR ERV1 4 591 0 3965 125 15 21 chr12 16123609 16123796 -127662659 + L1PA16 LINE L1 5979 6166 0 313 278 61 0 chr12 16123935 16124050 -127662405 + L1MEd LINE L1 604 725 -5394 865 218 161 59 chr12 16124137 16124462 -127661993 - L1ME LINE L1 -383 5787 5404 1757 132 52 14 chr12 16124462 16124749 -127661706 - AluSx SINE Alu -14 298 1 865 218 161 59 chr12 16124749 16124863 -127661592 - L1ME LINE L1 -766 5404 5303 650 161 23 8 chr12 16125356 16125486 -127660969 - AluJo SINE Alu -176 136 5 1948 106 36 30 chr12 16126406 16126708 -127659747 + AluSx SINE Alu 1 304 -8 200 143 48 0 chr12 16128889 16128931 -127657524 + C-rich Low_complexity Low_complexity 5 48 0 2621 27 0 3 chr12 16129674 16129974 -127656481 + AluY SINE Alu 1 299 -12 321 269 64 0 chr12 16130291 16130369 -127656086 - MIR SINE MIR -148 114 32 184 368 0 0 chr12 16130400 16130457 -127655998 - L2 LINE L2 -15 3298 3242 332 302 21 10 chr12 16133442 16133538 -127652917 - L2 LINE L2 -19 3253 3157 183 42 0 0 chr12 16134545 16134569 -127651886 + (CA)n Simple_repeat Simple_repeat 2 25 0 585 273 120 10 chr12 16134824 16135033 -127651422 + MIR SINE MIR 31 262 0 215 324 99 55 chr12 16135605 16135858 -127650597 - L2 LINE L2 -1020 2294 2031 22 35 0 0 chr12 16136174 16136203 -127650252 + AT_rich Low_complexity Low_complexity 1 29 0 2114 125 3 19 chr12 16136542 16136855 -127649600 - AluJb SINE Alu 0 312 5 2199 164 173 4 chr12 16137783 16138308 -127648147 - MER90 LTR ERV1 0 614 1 469 286 75 6 chr12 16138677 16138838 -127647617 - LTR33 LTR ERVL -326 195 24 287 141 0 26 chr12 16139570 16139692 -127646763 + LTR41 LTR ERVL 1 172 -601 462 148 62 0 chr12 16139753 16139834 -127646621 + MER58B DNA MER1_type 256 341 0 359 267 139 10 chr12 16141126 16141227 -127645228 + L2 LINE L2 3158 3271 -1 1381 158 57 0 chr12 16142261 16142489 -127643966 + AluJo SINE Alu 42 282 -30 2289 91 3 10 chr12 16145174 16145470 -127640985 + AluSq SINE Alu 1 294 -19 293 212 15 0 chr12 16145631 16145697 -127640758 - HsTC2 DNA Tc2 -4 1894 1828 1699 99 0 5 chr12 16146522 16146744 -127639711 + AluY SINE Alu 1 221 -90 376 233 34 41 chr12 16146749 16146915 -127639540 + L1MC3 LINE L1 6002 6166 0 1654 178 28 10 chr12 16147342 16147729 -127638726 + L1MD2 LINE L1 3592 3985 -2161 632 200 0 7 chr12 16147763 16147898 -127638557 + L1MD2 LINE L1 4789 4922 -1224 225 154 0 0 chr12 16147935 16147974 -127638481 + GA-rich Low_complexity Low_complexity 2 40 0 3888 224 48 12 chr12 16148013 16148953 -127637502 + L1MD2 LINE L1 4964 5869 -490 2695 81 21 55 chr12 16148953 16149373 -127637082 - L1PA13 LINE L1 -3 6160 5755 3888 224 48 12 chr12 16149373 16149579 -127636876 + L1MD2 LINE L1 5869 6066 -293 327 25 0 0 chr12 16149579 16149619 -127636836 + (CA)n Simple_repeat Simple_repeat 2 41 0 3888 224 48 12 chr12 16149619 16149738 -127636717 + L1MD2 LINE L1 6066 6273 -86 1148 302 106 17 chr12 16150017 16150481 -127635974 - L2 LINE L2 -2 3311 2807 1657 209 171 9 chr12 16150496 16150951 -127635504 - MLT1F LTR MaLR -13 529 1 308 366 93 12 chr12 16150990 16151236 -127635219 - L2 LINE L2 -540 2774 2509 615 222 99 41 chr12 16151306 16151477 -127634978 - MER5A DNA MER1_type 0 189 9 339 356 86 26 chr12 16151476 16151827 -127634628 + L2 LINE L2 2195 2566 -748 * 271 283 74 111 chr12 16152159 16152456 -127633999 + L2 LINE L2 2937 3222 -50 364 279 44 44 chr12 16152758 16152916 -127633539 + L2 LINE L2 3156 3313 0 2228 109 3 0 chr12 16155037 16155331 -127631124 + AluSq SINE Alu 1 295 -18 252 245 0 0 chr12 16156297 16156350 -127630105 - MIR SINE MIR -6 256 204 1353 137 5 0 chr12 16156498 16156703 -127629752 - AluJb SINE Alu -106 206 1 582 160 10 10 chr12 16156711 16156811 -127629644 - AluJb SINE Alu -23 289 190 396 106 64 0 chr12 16157923 16158017 -127628438 + CT-rich Low_complexity Low_complexity 1 100 0 364 295 152 29 chr12 16158523 16158733 -127627722 - MIR SINE MIR -6 256 21 388 254 61 48 chr12 16159461 16159626 -127626829 - MIR3 SINE MIR -30 178 12 453 279 158 21 chr12 16159726 16159916 -127626539 + MIR SINE MIR 2 217 -45 734 147 94 12 chr12 16160214 16160384 -127626071 + L1MA9 LINE L1 6091 6274 -38 364 257 88 68 chr12 16160570 16160718 -127625737 + MIR SINE MIR 112 262 0 209 33 33 0 chr12 16160784 16160814 -127625641 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr12 16160841 16160866 -127625589 + AT_rich Low_complexity Low_complexity 1 25 0 539 225 33 13 chr12 16160885 16161036 -127625419 - L1MA9 LINE L1 -38 6274 6121 235 295 33 41 chr12 16161183 16161305 -127625150 - MIR3 SINE MIR -40 168 48 1681 175 3 3 chr12 16161580 16161865 -127624590 + AluSx SINE Alu 20 304 -8 417 59 0 0 chr12 16161865 16161916 -127624539 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 620 124 9 0 chr12 16161916 16162021 -127624434 + (GA)n Simple_repeat Simple_repeat 2 107 0 229 321 0 45 chr12 16162738 16162872 -127623583 - MIR SINE MIR -62 146 19 183 129 0 0 chr12 16163531 16163562 -127622893 + (T)n Simple_repeat Simple_repeat 1 31 0 288 241 181 17 chr12 16163934 16164050 -127622405 + MIR3 SINE MIR 68 202 -6 195 163 61 82 chr12 16165676 16165725 -127620730 + L2 LINE L2 3209 3256 -16 746 196 111 54 chr12 16167252 16167702 -127618753 - MER69 DNA AcHobo -2 2524 1980 333 0 0 0 chr12 16167702 16167739 -127618716 + (TG)n Simple_repeat Simple_repeat 1 37 0 746 196 111 54 chr12 16167739 16167797 -127618658 - MER69 DNA AcHobo -546 1980 1927 201 283 19 0 chr12 16168864 16168917 -127617538 - L2 LINE L2 -5 3308 3255 210 238 303 41 chr12 16172259 16172381 -127614074 - MIR3 SINE MIR -11 197 44 314 343 22 15 chr12 16172491 16172625 -127613830 + MER5A DNA MER1_type 18 152 -37 21 57 0 0 chr12 16172627 16172662 -127613793 + AT_rich Low_complexity Low_complexity 1 35 0 2317 98 3 0 chr12 16172672 16172967 -127613488 + AluSp SINE Alu 1 296 -17 2961 161 69 12 chr12 16174039 16174603 -127611852 - L1PA16 LINE L1 -4 6162 5567 5129 196 18 10 chr12 16174715 16176154 -127610301 - L1PA16 LINE L1 -589 5577 4125 347 329 12 42 chr12 16176261 16176428 -127610027 + L2 LINE L2 2709 2870 -444 2594 62 0 0 chr12 16176479 16176787 -127609668 - AluY SINE Alu -3 308 1 222 304 138 36 chr12 16176847 16177094 -127609361 + L2 LINE L2 3004 3275 -38 1944 138 58 19 chr12 16178931 16179292 -127607163 - THE1C LTR MaLR 0 375 1 1077 224 32 44 chr12 16179717 16179818 -127606637 - MER87 LTR ERV1 -39 502 401 1657 181 31 10 chr12 16179818 16180110 -127606345 + AluSx SINE Alu 1 298 -14 1077 224 32 44 chr12 16180110 16180347 -127606108 - MER87 LTR ERV1 -140 401 168 566 318 23 17 chr12 16181165 16181338 -127605117 + MIR3 SINE MIR 20 193 -15 291 358 58 47 chr12 16181667 16182030 -127604425 - L2 LINE L2 -408 2906 2540 475 360 92 10 chr12 16182238 16182541 -127603914 + L2 LINE L2 1729 2056 -1258 408 220 99 0 chr12 16182626 16182717 -127603738 + L2 LINE L2 3202 3301 -12 296 64 21 0 chr12 16182719 16182766 -127603689 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 196 331 205 8 chr12 16182834 16182961 -127603494 + L2 LINE L2 2238 2389 -925 275 372 67 74 chr12 16183009 16183747 -127602708 + L2 LINE L2 2511 3258 -14 414 246 94 49 chr12 16184594 16184797 -127601658 - MIR SINE MIR -49 213 2 297 75 0 0 chr12 16185629 16185669 -127600786 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1300 101 5 0 chr12 16185669 16185867 -127600588 - L1PA8 LINE L1 -24 6148 5950 25 31 0 0 chr12 16185874 16185906 -127600549 + AT_rich Low_complexity Low_complexity 1 32 0 193 279 0 0 chr12 16187303 16187346 -127599109 + L2 LINE L2 3230 3272 0 372 103 0 0 chr12 16188037 16188095 -127598360 + (TG)n Simple_repeat Simple_repeat 1 58 0 315 164 0 0 chr12 16188491 16188552 -127597903 + (CA)n Simple_repeat Simple_repeat 2 62 0 800 279 117 30 chr12 16188615 16189758 -127596697 + L1ME3A LINE L1 1429 2639 -3576 2151 109 0 7 chr12 16189758 16190052 -127596403 - AluSc SINE Alu -17 292 1 800 279 117 30 chr12 16190052 16190198 -127596257 + L1ME3A LINE L1 2639 2771 -3444 469 226 60 5 chr12 16190220 16190419 -127596036 + L1ME3A LINE L1 2874 3083 -3132 3760 92 6 0 chr12 16190612 16191154 -127595301 - MER41A LTR ERV1 -9 545 1 4629 132 17 36 chr12 16191236 16192099 -127594356 + L1MA6 LINE L1 5428 6274 -26 496 52 13 13 chr12 16192290 16192367 -127594088 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 856 236 81 32 chr12 16192434 16192680 -127593775 - MLT2B1 LTR ERVL -34 486 229 2177 94 23 17 chr12 16192747 16193046 -127593409 - AluSx SINE Alu -11 301 1 1563 233 92 68 chr12 16193074 16194219 -127592236 + L1ME3A LINE L1 5049 6224 -15 364 353 111 27 chr12 16194253 16194748 -127591707 + L2 LINE L2 2739 3271 -1 970 181 0 6 chr12 16195168 16195328 -127591127 + AluJo SINE Alu 1 159 -153 330 345 17 0 chr12 16195410 16195529 -127590926 - MER5C DNA MER1_type -200 124 4 215 319 50 71 chr12 16195863 16196004 -127590451 - MIR SINE MIR -71 191 54 279 300 0 0 chr12 16196046 16196116 -127590339 - MIR SINE MIR -119 143 74 654 241 203 5 chr12 16197574 16197781 -127588674 + MIR SINE MIR 2 249 -13 2254 217 28 17 chr12 16197886 16198416 -127588039 - MLT1F LTR MaLR 0 542 7 350 363 19 32 chr12 16199169 16199326 -127587129 + L3 LINE CR1 1381 1535 -42 590 255 194 5 chr12 16199331 16199547 -127586908 - MIR SINE MIR -3 259 3 2253 125 14 3 chr12 16199657 16200009 -127586446 - L1PA14 LINE L1 -1 6160 5805 1639 134 24 3 chr12 16200435 16200727 -127585728 + L1MA5 LINE L1 6002 6299 -1 21 36 0 0 chr12 16200736 16200764 -127585691 + AT_rich Low_complexity Low_complexity 1 28 0 399 157 0 0 chr12 16201211 16201281 -127585174 + (CA)n Simple_repeat Simple_repeat 1 70 0 24 0 0 0 chr12 16203011 16203035 -127583420 + AT_rich Low_complexity Low_complexity 1 24 0 1921 101 0 104 chr12 16203237 16203564 -127582891 + AluSg SINE Alu 5 297 -13 2498 184 19 35 chr12 16204148 16204687 -127581768 - MER74A LTR ERVL -3 555 26 22 35 0 0 chr12 16205817 16205846 -127580609 + AT_rich Low_complexity Low_complexity 1 29 0 761 285 71 45 chr12 16205851 16206275 -127580180 - LTR16A LTR ERVL 0 450 16 189 184 0 0 chr12 16206499 16206537 -127579918 - L2 LINE L2 0 3313 3276 1331 188 5 0 chr12 16206567 16206785 -127579670 + AluJb SINE Alu 1 219 -93 180 320 53 27 chr12 16209113 16209188 -127577267 + MIR SINE MIR 36 112 -96 1126 141 23 23 chr12 16209233 16209410 -127577045 - FRAM SINE Alu 0 176 1 2332 104 0 0 chr12 16209669 16209967 -127576488 + AluSg SINE Alu 1 298 -12 3833 119 94 20 chr12 16210934 16211648 -127574807 - LTR1 LTR ERV1 -1 784 18 594 279 119 9 chr12 16211889 16212108 -127574347 + MIR SINE MIR 3 245 -17 306 0 0 0 chr12 16212738 16212772 -127573683 + (TG)n Simple_repeat Simple_repeat 2 35 0 230 314 19 0 chr12 16212938 16213043 -127573412 + A-rich Low_complexity Low_complexity 1 107 0 213 94 0 0 chr12 16214656 16214688 -127571767 - L2 LINE L2 -11 3302 3271 418 351 124 53 chr12 16214975 16215842 -127570613 + L2 LINE L2 2225 3195 -77 391 343 34 59 chr12 16216062 16216301 -127570154 + L1MEc LINE L1 1509 1715 -861 844 225 0 28 chr12 16216515 16216697 -127569758 + FRAM SINE Alu 1 169 -7 871 331 68 35 chr12 16216933 16217570 -127568885 + L1MEc LINE L1 2317 2974 -3241 28 0 0 0 chr12 16217571 16217599 -127568856 + AT_rich Low_complexity Low_complexity 1 28 0 329 303 9 9 chr12 16217607 16217716 -127568739 + L1MEc LINE L1 3650 3758 -2457 316 313 53 40 chr12 16218076 16218226 -127568229 - L2 LINE L2 -4 3309 3158 32 43 0 0 chr12 16218338 16218384 -127568071 + AT_rich Low_complexity Low_complexity 1 46 0 305 313 40 40 chr12 16220269 16220368 -127566087 - L2 LINE L2 -25 3247 3149 2133 108 18 0 chr12 16220680 16220995 -127565460 + AluSx SINE Alu 1 320 0 256 329 89 0 chr12 16221276 16221422 -127565033 - MIR SINE MIR -6 256 98 510 250 13 26 chr12 16221444 16221600 -127564855 - MIR SINE MIR 0 262 109 190 333 16 16 chr12 16222875 16222938 -127563517 - MIR SINE MIR -89 119 57 202 293 20 91 chr12 16223280 16223338 -127563117 - MIR SINE MIR -83 125 75 2185 124 0 16 chr12 16223338 16223653 -127562802 + AluSx SINE Alu 1 310 -2 202 293 20 91 chr12 16223653 16223693 -127562762 - MIR SINE MIR -133 75 34 628 357 34 4 chr12 16225345 16225580 -127560875 + MIR SINE MIR 9 250 -12 356 245 102 0 chr12 16226703 16226801 -127559654 + L2 LINE L2 3206 3313 0 276 102 0 0 chr12 16226806 16226855 -127559600 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 200 303 0 15 chr12 16227445 16227511 -127558944 + T-rich Low_complexity Low_complexity 3 67 0 203 254 0 56 chr12 16229109 16229180 -127557275 + L2 LINE L2 3186 3252 -20 203 243 0 0 chr12 16230174 16230211 -127556244 + polypyrimidine Low_complexity Low_complexity 6 42 0 2269 118 0 9 chr12 16232008 16232323 -127554132 - AluSx SINE Alu 0 312 1 1588 126 170 0 chr12 16233176 16233423 -127553032 - AluSx SINE Alu -23 289 1 325 179 52 67 chr12 16234273 16234407 -127552048 + L1MEc LINE L1 2154 2285 -4111 326 258 50 58 chr12 16234417 16234484 -127551971 - L1MEc LINE L1 -4459 1937 1842 22 35 0 0 chr12 16234484 16234513 -127551942 + AT_rich Low_complexity Low_complexity 1 29 0 326 258 50 58 chr12 16234513 16234537 -127551918 - L1MEc LINE L1 -4554 1842 1819 358 209 79 3 chr12 16234538 16234647 -127551808 + AluJ/FRAM SINE Alu 223 302 0 2506 256 152 53 chr12 16234651 16236252 -127550203 - L1MEc LINE L1 -4565 1831 73 505 299 81 15 chr12 16236324 16236521 -127549934 + LTR16A LTR ERVL 241 450 0 313 274 17 68 chr12 16236617 16236734 -127549721 - MIR3 SINE MIR -11 197 87 1021 257 20 4 chr12 16237134 16237383 -127549072 + MIR SINE MIR 7 259 -3 228 35 0 0 chr12 16237720 16237749 -127548706 + (TAG)n Simple_repeat Simple_repeat 1 29 0 355 336 0 35 chr12 16239207 16239350 -127547105 + LTR16A LTR ERVL 93 230 -220 450 0 0 0 chr12 16240452 16240502 -127545953 + (TA)n Simple_repeat Simple_repeat 2 51 0 188 211 0 0 chr12 16240732 16240770 -127545685 - L2 LINE L2 -7 3306 3269 685 341 148 14 chr12 16240958 16241465 -127544990 - L3 LINE CR1 -385 1192 618 921 213 76 105 chr12 16242049 16242457 -127543998 - MER57A LTR ERV1 -5 398 3 22 35 0 0 chr12 16243619 16243648 -127542807 + AT_rich Low_complexity Low_complexity 1 29 0 505 330 124 35 chr12 16244603 16245064 -127541391 + L3 LINE CR1 1071 1572 -5 5470 254 44 22 chr12 16245640 16248351 -127538104 + L1PA12 LINE L1 1 3296 -4288 36269 85 10 10 chr12 16248361 16254153 -127532302 + L1PA6 LINE L1 11 5811 -343 2384 93 0 0 chr12 16254153 16254454 -127532001 + AluY SINE Alu 1 301 -10 36269 85 10 10 chr12 16254454 16254799 -127531656 + L1PA6 LINE L1 5811 6154 0 17378 152 27 16 chr12 16254802 16255358 -127531097 + L1PA11 LINE L1 1652 2201 -4253 2066 145 0 37 chr12 16255358 16255682 -127530773 + AluSx SINE Alu 1 312 0 17378 152 27 16 chr12 16255682 16258824 -127527631 + L1PA11 LINE L1 2201 5837 -617 1864 129 86 0 chr12 16258824 16259102 -127527353 + AluSx SINE Alu 1 302 -10 17378 152 27 16 chr12 16259102 16259727 -127526728 + L1PA11 LINE L1 5837 6454 0 315 215 13 142 chr12 16259762 16259830 -127526625 + MIR SINE MIR 42 79 -172 1996 132 24 0 chr12 16259830 16260126 -127526329 + AluJb SINE Alu 1 303 -9 315 215 13 142 chr12 16260126 16260225 -127526230 + MIR SINE MIR 79 189 -62 870 206 75 9 chr12 16261584 16261812 -127524643 + AluJo SINE Alu 66 308 -4 565 319 56 14 chr12 16262171 16262416 -127524039 - MIR SINE MIR 0 262 14 236 273 34 23 chr12 16262889 16262977 -127523478 + MIR SINE MIR 168 256 -6 1812 172 14 3 chr12 16263069 16263359 -127523096 + AluJo SINE Alu 1 293 -19 300 178 0 0 chr12 16263359 16263432 -127523023 + G-rich Low_complexity Low_complexity 2 74 0 196 182 0 0 chr12 16263648 16263681 -127522774 + L3 LINE CR1 431 463 -1114 2006 234 76 48 chr12 16263688 16263805 -127522650 - L1MCc LINE L1 -4957 1466 1354 1876 183 3 3 chr12 16263805 16264105 -127522350 - AluJo SINE Alu -12 300 1 2006 234 76 48 chr12 16264105 16264763 -127521692 - L1MCc LINE L1 -5069 1354 669 1636 269 5 5 chr12 16264814 16265246 -127521209 - L1MCc LINE L1 -5967 456 25 232 182 0 0 chr12 16265263 16265307 -127521148 - Charlie8 DNA MER1_type -997 1420 1377 1194 278 116 65 chr12 16265454 16266181 -127520274 + L3 LINE CR1 504 1267 -310 230 278 120 37 chr12 16267976 16268084 -127518371 + L2 LINE L2 3196 3312 -1 192 77 0 0 chr12 16268344 16268370 -127518085 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1827 216 121 2 chr12 16268659 16269206 -127517249 + L1MC4 LINE L1 7431 8042 0 335 320 47 13 chr12 16269683 16269833 -127516622 - MIR SINE MIR -71 191 37 651 188 0 18 chr12 16270112 16270282 -127516173 + CT-rich Low_complexity Low_complexity 2 168 0 188 289 99 33 chr12 16270518 16270639 -127515816 + MIR SINE MIR 97 225 -37 209 345 44 53 chr12 16270692 16270805 -127515650 - MIR SINE MIR -76 132 21 808 262 86 13 chr12 16271050 16271283 -127515172 - MIR SINE MIR 0 262 13 267 274 139 36 chr12 16271342 16271645 -127514810 + L1ME4a LINE L1 5784 6117 -4 180 111 0 0 chr12 16273349 16273376 -127513079 + (GCTTG)n Simple_repeat Simple_repeat 2 28 0 1562 220 30 28 chr12 16276080 16276475 -127509980 + MSTD LTR MaLR 1 396 0 181 317 37 99 chr12 16276963 16277124 -127509331 + L2 LINE L2 2490 2640 -674 368 313 123 33 chr12 16277869 16278025 -127508430 + MIR SINE MIR 33 214 -48 2062 150 0 3 chr12 16278025 16278331 -127508124 + AluSx SINE Alu 1 305 -7 368 313 123 33 chr12 16278331 16278385 -127508070 + MIR SINE MIR 214 262 0 225 157 39 20 chr12 16278390 16278441 -127508014 + L2 LINE L2 3221 3272 0 1187 165 74 0 chr12 16278721 16278951 -127507504 + Tigger7 DNA MER2_type 178 424 -309 2558 147 123 4 chr12 16279248 16279737 -127506718 + Tigger7 DNA MER2_type 1 547 -1940 437 188 0 118 chr12 16279732 16279876 -127506579 + Tigger7 DNA MER2_type 2361 2487 0 * 2218 92 10 0 chr12 16279937 16280229 -127506226 + AluSg SINE Alu 1 295 -15 204 67 0 0 chr12 16280271 16280301 -127506154 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 301 262 12 12 chr12 16281351 16281435 -127505020 + MIR SINE MIR 161 244 -18 22 0 0 0 chr12 16281456 16281478 -127504977 + AT_rich Low_complexity Low_complexity 1 22 0 417 245 177 7 chr12 16281633 16281780 -127504675 + MIR SINE MIR 9 180 -82 391 343 35 20 chr12 16282260 16282431 -127504024 - MIR SINE MIR -50 212 40 375 309 9 29 chr12 16282542 16282752 -127503703 + MER112 DNA MER1_type 49 254 -6 2945 260 119 12 chr12 16283157 16284275 -127502180 - L2 LINE L2 0 3313 2056 1823 154 34 14 chr12 16284275 16284568 -127501887 + AluJb SINE Alu 1 299 -13 2945 260 119 12 chr12 16284568 16284724 -127501731 - L2 LINE L2 -1257 2056 1918 277 231 90 13 chr12 16284745 16284823 -127501632 + MIR SINE MIR 31 114 -148 241 170 0 19 chr12 16285081 16285134 -127501321 + AluSc SINE Alu 246 297 -2 480 35 0 0 chr12 16285140 16285198 -127501257 + (TA)n Simple_repeat Simple_repeat 1 58 0 378 0 0 0 chr12 16285261 16285303 -127501152 + (CA)n Simple_repeat Simple_repeat 2 43 0 324 0 0 0 chr12 16285684 16285720 -127500735 + (CA)n Simple_repeat Simple_repeat 2 37 0 708 325 29 0 chr12 16285805 16286048 -127500407 + MIR SINE MIR 12 261 -1 300 253 0 0 chr12 16286049 16286124 -127500331 + (ATG)n Simple_repeat Simple_repeat 1 75 0 316 290 21 11 chr12 16286135 16286228 -127500227 + MIR3 SINE MIR 66 159 -49 33 25 0 0 chr12 16286486 16286526 -127499929 + AT_rich Low_complexity Low_complexity 1 40 0 958 308 47 37 chr12 16286664 16287154 -127499301 + MLT1K LTR MaLR 58 552 -36 2270 99 0 7 chr12 16288139 16288442 -127498013 + AluSg SINE Alu 2 302 -8 194 248 171 26 chr12 16288632 16288749 -127497706 - L2 LINE L2 -13 3300 3167 566 238 105 41 chr12 16289269 16289441 -127497014 + MER5A DNA MER1_type 7 189 0 282 56 0 0 chr12 16290995 16291031 -127495424 + (TG)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr12 16293079 16293108 -127493347 + AT_rich Low_complexity Low_complexity 1 29 0 393 376 5 5 chr12 16293285 16293474 -127492981 + L1ME LINE L1 22 210 -6330 267 31 0 0 chr12 16293494 16293526 -127492929 + (TTG)n Simple_repeat Simple_repeat 2 33 0 219 156 0 22 chr12 16293802 16293847 -127492608 + C-rich Low_complexity Low_complexity 3 46 0 472 266 37 37 chr12 16294132 16294346 -127492109 + L1ME LINE L1 2148 2361 -4179 730 244 93 9 chr12 16294368 16294593 -127491862 + MLT1C LTR MaLR 224 467 0 406 149 36 113 chr12 16294604 16294772 -127491683 + L1ME LINE L1 2393 2547 -3993 1273 220 25 22 chr12 16294778 16295137 -127491318 + L1M4 LINE L1 4264 4623 -1523 5057 222 121 61 chr12 16295154 16297039 -127489416 + L1ME LINE L1 3179 4950 -1590 2001 126 3 17 chr12 16297039 16297341 -127489114 - AluSc SINE Alu -11 298 1 5057 222 121 61 chr12 16297341 16297402 -127489053 + L1ME LINE L1 4950 5006 -1534 6422 70 17 8 chr12 16297402 16298488 -127487967 + L1PA8A LINE L1 5035 6128 -3 5057 222 121 61 chr12 16298488 16298766 -127487689 + L1ME LINE L1 5006 5537 -1003 2047 104 11 4 chr12 16298820 16299100 -127487355 + AluSx SINE Alu 24 305 -7 254 345 78 39 chr12 16299110 16299342 -127487113 - L2 LINE L2 -1330 1984 1744 221 355 79 32 chr12 16300265 16300454 -127486001 + L2 LINE L2 2765 2962 -352 429 320 143 26 chr12 16300757 16300988 -127485467 - MIR SINE MIR -3 259 2 789 196 35 30 chr12 16302658 16302888 -127483567 - L1MC5 LINE L1 -30 7931 7701 641 176 17 0 chr12 16302967 16303086 -127483369 + L1PA16 LINE L1 6040 6160 -6 272 232 23 90 chr12 16303140 16303317 -127483138 + L1ME LINE L1 5948 6112 -403 2490 51 0 0 chr12 16303382 16303677 -127482778 - AluY SINE Alu -16 295 1 278 353 32 5 chr12 16304107 16304294 -127482161 - Tigger8 DNA MER2_type -87 579 388 345 282 45 0 chr12 16304604 16304714 -127481741 - Tigger8 DNA MER2_type -420 246 132 251 319 36 87 chr12 16305301 16305439 -127481016 + L2 LINE L2 3142 3272 0 2209 109 3 0 chr12 16307662 16307956 -127478499 - AluSx SINE Alu -17 295 1 2082 108 3 10 chr12 16308711 16308999 -127477456 + AluSx SINE Alu 4 289 -23 214 296 91 0 chr12 16313261 16313349 -127473106 - MIR SINE MIR -56 206 111 502 238 90 0 chr12 16314863 16314985 -127471470 + MER20 DNA MER1_type 49 181 -38 200 170 38 0 chr12 16315470 16315523 -127470932 + (TA)n Simple_repeat Simple_repeat 2 56 0 24 32 0 0 chr12 16315703 16315734 -127470721 + AT_rich Low_complexity Low_complexity 1 31 0 225 348 65 14 chr12 16316348 16316486 -127469969 - Charlie8 DNA MER1_type -2139 278 134 591 250 91 43 chr12 16317404 16317612 -127468843 - MIR SINE MIR -3 259 42 383 309 37 53 chr12 16318039 16318227 -127468228 - MLT1K LTR MaLR -241 347 163 248 380 73 0 chr12 16318365 16318502 -127467953 - MIR SINE MIR -32 230 84 1367 133 167 31 chr12 16319076 16319393 -127467062 - MER46B DNA MER2_type 0 236 2 298 271 0 0 chr12 16319444 16319529 -127466926 + L1ME2 LINE L1 5579 5663 -501 757 233 47 57 chr12 16319531 16319831 -127466624 + L1ME2 LINE L1 5724 6020 -144 225 216 252 36 chr12 16319920 16320059 -127466396 - MIR SINE MIR -93 169 1 2167 132 0 0 chr12 16320080 16320390 -127466065 - AluSg SINE Alu 0 310 1 2320 103 10 0 chr12 16322978 16323288 -127463167 - AluSq SINE Alu 0 313 1 425 222 93 9 chr12 16323355 16323463 -127462992 - L2 LINE L2 -4 3309 3193 2915 119 15 7 chr12 16323698 16324153 -127462302 - L1PB2 LINE L1 -2 6149 5691 459 333 81 10 chr12 16324718 16324916 -127461539 - MIR SINE MIR -48 214 3 2268 102 0 3 chr12 16326244 16326537 -127459918 - AluY SINE Alu -19 292 1 25 0 0 0 chr12 16327343 16327368 -127459087 + AT_rich Low_complexity Low_complexity 1 25 0 240 143 0 0 chr12 16328064 16328106 -127458349 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 206 200 25 0 chr12 16328107 16328147 -127458308 + MER5C DNA MER1_type 284 324 0 24 53 0 0 chr12 16329070 16329108 -127457347 + AT_rich Low_complexity Low_complexity 1 38 0 6114 206 40 15 chr12 16329127 16332426 -127454029 + L1MA4 LINE L1 3 3386 -2942 1575 168 7 7 chr12 16332427 16332719 -127453736 - AluSq SINE Alu -8 305 14 261 235 12 0 chr12 16332997 16333082 -127453373 - L1 LINE L1 -2951 3195 3110 2074 124 3 7 chr12 16333082 16333388 -127453067 - AluSq SINE Alu -8 305 1 9863 168 33 31 chr12 16333390 16336018 -127450437 + L1MA4 LINE L1 3385 6016 -466 1096 177 51 9 chr12 16336018 16336233 -127450222 + THE1C LTR MaLR 1 224 -151 1514 112 0 0 chr12 16336953 16337150 -127449305 - AluSx SINE Alu -115 197 1 313 264 132 25 chr12 16337286 16337407 -127449048 - L2 LINE L2 -1 3312 3179 825 276 0 10 chr12 16337467 16337670 -127448785 + MIR SINE MIR 28 228 -34 7172 176 34 30 chr12 16338506 16340258 -127446197 + L1PA16 LINE L1 3539 5282 -884 2394 103 3 0 chr12 16340258 16340570 -127445885 + AluSp SINE Alu 1 313 0 7172 176 34 30 chr12 16340570 16340903 -127445552 + L1PA16 LINE L1 5282 5612 -554 1770 96 100 4 chr12 16340903 16341153 -127445302 + AluSp SINE Alu 1 274 -39 7172 176 34 30 chr12 16341153 16341665 -127444790 + L1PA16 LINE L1 5612 6164 -2 1361 253 65 17 chr12 16341662 16342121 -127444334 + L1M4 LINE L1 4783 5263 -883 * 734 192 29 17 chr12 16342122 16342294 -127444161 + L1MB4 LINE L1 6007 6180 0 2820 249 32 29 chr12 16342307 16343004 -127443451 - L1MEc LINE L1 -5462 934 232 726 143 118 0 chr12 16343004 16343123 -127443332 - FLAM_C SINE Alu 0 133 1 2820 249 32 29 chr12 16343123 16343319 -127443136 - L1MEc LINE L1 -6164 232 38 687 287 101 27 chr12 16343322 16344177 -127442278 - L1M4b LINE L1 -4614 2343 1332 324 120 0 0 chr12 16346462 16346512 -127439943 + (CA)n Simple_repeat Simple_repeat 1 50 0 269 291 116 0 chr12 16346676 16346762 -127439693 - MIR SINE MIR -118 144 49 434 74 0 0 chr12 16347492 16347546 -127438909 + Alu SINE Alu 228 281 -29 2075 102 7 36 chr12 16347948 16348252 -127438203 - AluSx SINE Alu -17 295 1 306 314 159 23 chr12 16348502 16348722 -127437733 - MIR SINE MIR -12 250 1 377 246 136 0 chr12 16348734 16348844 -127437611 - MIR SINE MIR -36 226 102 1715 159 82 12 chr12 16349493 16349833 -127436622 + MLT1A1 LTR MaLR 1 364 -1 446 299 96 0 chr12 16350719 16350886 -127435569 - MLT1J2 LTR MaLR -2 448 266 228 362 145 18 chr12 16351376 16351597 -127434858 + L2 LINE L2 3047 3295 -18 235 306 106 53 chr12 16351771 16351941 -127434514 + MIR SINE MIR 40 218 -44 182 318 0 16 chr12 16352561 16352624 -127433831 + L2 LINE L2 3211 3272 0 266 341 18 43 chr12 16352683 16352847 -127433608 - L3 LINE CR1 -352 1225 1066 2222 102 0 29 chr12 16353709 16354022 -127432433 + AluSx SINE Alu 1 304 -8 748 112 60 22 chr12 16357968 16358102 -127428353 - L1MA9 LINE L1 0 6312 6174 330 153 0 0 chr12 16358102 16358161 -127428294 + (TA)n Simple_repeat Simple_repeat 2 60 0 713 72 0 0 chr12 16358172 16358269 -127428186 - L1MA9 LINE L1 -153 6159 6063 327 301 73 70 chr12 16358955 16359297 -127427158 + L1ME4a LINE L1 5716 6058 -63 210 253 172 10 chr12 16359952 16360051 -127426404 - MIR SINE MIR -110 152 38 43 20 0 0 chr12 16360752 16360802 -127425653 + AT_rich Low_complexity Low_complexity 1 50 0 1719 72 0 0 chr12 16360806 16361013 -127425442 - AluSc SINE Alu -20 289 83 2248 103 0 7 chr12 16361290 16361591 -127424864 - AluSx SINE Alu -13 299 1 2217 117 0 19 chr12 16363267 16363584 -127422871 - AluSx SINE Alu -1 311 1 475 309 48 24 chr12 16365275 16365443 -127421012 + MIR SINE MIR 1 172 -90 224 292 46 0 chr12 16366029 16366094 -127420361 + MIR SINE MIR 40 107 -155 869 271 86 46 chr12 16366098 16366530 -127419925 + LTR16A1 LTR ERVL 1 449 -8 269 221 93 0 chr12 16366530 16366616 -127419839 + MIR SINE MIR 110 203 -59 190 319 31 105 chr12 16368488 16368679 -127417776 - L2 LINE L2 -87 3185 3009 1317 194 56 22 chr12 16368939 16369158 -127417297 - MER58B DNA MER1_type -2080 340 105 1641 207 10 0 chr12 16369158 16369178 -127417277 - AluSq SINE Alu -9 304 286 180 0 0 0 chr12 16369178 16369198 -127417257 + (TG)n Simple_repeat Simple_repeat 1 20 0 1641 207 10 0 chr12 16369198 16369476 -127416979 - AluSq SINE Alu -27 286 3 1317 194 56 22 chr12 16369476 16369576 -127416879 - MER58B DNA MER1_type -2315 105 10 185 95 0 48 chr12 16369932 16369974 -127416481 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3240 106 47 4 chr12 16370341 16370831 -127415624 + MER9 LTR ERVK 1 511 0 394 236 34 0 chr12 16371151 16371240 -127415215 + MER65C LTR ERV1 1 92 -369 1153 56 0 7 chr12 16371240 16371383 -127415072 + AluSg/x SINE Alu 165 306 -6 2211 133 3 13 chr12 16371383 16371767 -127414688 + MER65C LTR ERV1 80 459 -2 301 243 54 27 chr12 16374821 16374895 -127411560 + MER91C DNA MER1_type 44 119 -21 238 329 43 43 chr12 16375828 16375968 -127410487 + MIR SINE MIR 58 197 -65 790 222 68 17 chr12 16376639 16377024 -127409431 + MLT1C LTR MaLR 1 466 -1 743 198 249 20 chr12 16377115 16377266 -127409189 - MLT1A2 LTR MaLR -4 361 246 1902 130 61 21 chr12 16377266 16377596 -127408859 + MER61A LTR ERV1 1 343 0 743 198 249 20 chr12 16377596 16377737 -127408718 - MLT1A2 LTR MaLR -119 246 2 247 203 0 47 chr12 16377939 16378003 -127408452 - MLT1K LTR MaLR -17 571 511 2057 166 16 51 chr12 16379210 16379639 -127406816 + MLT2D LTR ERVL 1 414 0 499 273 22 49 chr12 16379711 16379894 -127406561 - MER20B DNA MER1_type -605 178 1 228 214 0 0 chr12 16379894 16379936 -127406519 - MIR3 SINE MIR -48 160 119 2062 114 7 0 chr12 16381092 16381396 -127405059 + AluSg SINE Alu 1 306 0 277 191 0 44 chr12 16381638 16381706 -127404749 + MLT1K LTR MaLR 511 575 -13 226 336 121 0 chr12 16383605 16383729 -127402726 + MIR SINE MIR 36 174 -57 2115 125 0 0 chr12 16384214 16384530 -127401925 - AluSx SINE Alu 0 316 1 343 346 60 16 chr12 16384740 16384925 -127401530 - MIR SINE MIR -57 205 13 327 306 11 38 chr12 16385134 16385317 -127401138 + GA-rich Low_complexity Low_complexity 3 180 0 2118 128 0 0 chr12 16385857 16386139 -127400316 + AluSx SINE Alu 1 282 -30 187 54 54 0 chr12 16386142 16386179 -127400276 + A-rich Low_complexity Low_complexity 2 40 0 26 0 0 0 chr12 16388026 16388052 -127398403 + AT_rich Low_complexity Low_complexity 1 26 0 206 223 0 117 chr12 16388176 16388270 -127398185 + L2 LINE L2 3189 3271 -1 245 205 102 102 chr12 16391234 16391361 -127395094 - L3b LINE CR1 -171 1412 1286 193 344 0 0 chr12 16391432 16391493 -127394962 - L3b LINE CR1 -415 1168 1108 315 305 150 20 chr12 16391763 16391963 -127394492 + MIR SINE MIR 21 246 -16 25 31 0 0 chr12 16393012 16393044 -127393411 + AT_rich Low_complexity Low_complexity 1 32 0 1805 150 13 19 chr12 16394449 16394756 -127391699 + AluJb SINE Alu 6 310 -2 23 0 0 0 chr12 16394756 16394779 -127391676 + AT_rich Low_complexity Low_complexity 1 23 0 2249 96 36 0 chr12 16395348 16395649 -127390806 + AluSx SINE Alu 1 312 0 23 0 0 0 chr12 16395837 16395860 -127390595 + AT_rich Low_complexity Low_complexity 1 23 0 1069 228 135 20 chr12 16396508 16396960 -127389495 + Charlie4a DNA MER1_type 1 504 -4 871 254 88 58 chr12 16397183 16397424 -127389031 + L2 LINE L2 1975 2232 -1082 2133 90 21 14 chr12 16397424 16397712 -127388743 - AluSq SINE Alu -17 296 7 871 254 88 58 chr12 16397712 16397832 -127388623 + L2 LINE L2 2232 2347 -967 2946 68 25 8 chr12 16397832 16398229 -127388226 + MLT2A1 LTR ERVL 1 404 -40 214 149 21 21 chr12 16398248 16398295 -127388160 + (TA)n Simple_repeat Simple_repeat 1 47 0 322 105 0 35 chr12 16398303 16398360 -127388095 + MLT2A1 LTR ERVL 399 453 0 2019 271 74 28 chr12 16398360 16398480 -127387975 + L2 LINE L2 2343 2456 -857 1919 91 76 0 chr12 16398480 16398743 -127387712 - AluSp SINE Alu -8 305 23 2019 271 74 28 chr12 16398743 16399489 -127386966 + L2 LINE L2 2456 3246 -67 2261 125 0 0 chr12 16399578 16399882 -127386573 + AluSx SINE Alu 1 304 -8 303 261 86 39 chr12 16402008 16402151 -127384304 + MIR3 SINE MIR 4 160 -68 2532 144 14 23 chr12 16402201 16402639 -127383816 + Tigger2a DNA MER2_type 1 434 0 184 115 0 58 chr12 16402722 16402774 -127383681 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 418 285 81 12 chr12 16403186 16403358 -127383097 - MIR SINE MIR -48 214 31 22 0 0 0 chr12 16403627 16403649 -127382806 + AT_rich Low_complexity Low_complexity 1 22 0 651 290 21 21 chr12 16403852 16404098 -127382357 - L1MC4a LINE L1 -352 5826 5681 354 183 0 0 chr12 16404104 16404175 -127382280 + (CA)n Simple_repeat Simple_repeat 2 72 0 208 295 16 0 chr12 16404175 16404236 -127382219 + (TA)n Simple_repeat Simple_repeat 2 63 0 535 266 73 49 chr12 16404259 16404545 -127381910 - L1MC4a LINE L1 -2179 5629 5337 21 0 0 0 chr12 16406125 16406146 -127380309 + AT_rich Low_complexity Low_complexity 1 21 0 1713 147 68 4 chr12 16406647 16406926 -127379529 - AluJb SINE Alu -15 297 1 2304 77 0 39 chr12 16408150 16408462 -127377993 - AluSc SINE Alu -9 300 1 1616 161 29 6 chr12 16409788 16410099 -127376356 + MER33 DNA MER1_type 7 324 0 1220 119 92 37 chr12 16410228 16410446 -127376009 - MER30 DNA MER1_type 0 230 1 1865 166 47 36 chr12 16410577 16410656 -127375799 + MLT1B LTR MaLR 1 78 -312 2143 117 3 0 chr12 16410656 16410946 -127375509 - AluSx SINE Alu -19 293 3 1865 166 47 36 chr12 16410946 16411252 -127375203 + MLT1B LTR MaLR 78 390 0 21 0 0 0 chr12 16412369 16412390 -127374065 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 16412812 16412833 -127373622 + AT_rich Low_complexity Low_complexity 1 21 0 2261 118 0 3 chr12 16412886 16413199 -127373256 - AluSx SINE Alu 0 312 1 768 238 0 0 chr12 16413365 16413533 -127372922 - L1PB4 LINE L1 -7 6149 5982 467 340 38 0 chr12 16413711 16413870 -127372585 - MIR3 SINE MIR -13 195 31 2188 84 28 0 chr12 16414155 16414441 -127372014 + AluSg SINE Alu 1 294 -16 2216 303 131 23 chr12 16414714 16415796 -127370659 + L2 LINE L2 1413 2611 -703 241 167 0 100 chr12 16415819 16415879 -127370576 + MER94 DNA DNA 1 54 -80 1343 265 83 27 chr12 16415978 16416616 -127369839 + L2 LINE L2 2627 3313 0 256 333 81 0 chr12 16417069 16417156 -127369299 + MIR3 SINE MIR 107 200 -8 216 0 0 0 chr12 16417232 16417256 -127369199 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1172 293 108 72 chr12 16417256 16418086 -127368369 + L2 LINE L2 2048 2907 -407 209 307 14 100 chr12 16418160 16418300 -127368155 + L2 LINE L2 3182 3309 -4 209 194 0 0 chr12 16418357 16418393 -127368062 + T-rich Low_complexity Low_complexity 3 38 0 192 231 39 19 chr12 16419150 16419202 -127367253 - L2 LINE L2 -4 3309 3257 243 356 62 25 chr12 16419805 16419965 -127366490 + L3 LINE CR1 1209 1374 -203 553 288 44 34 chr12 16420074 16420279 -127366176 + MER20B DNA MER1_type 4 210 -573 31 26 0 0 chr12 16420409 16420447 -127366008 + AT_rich Low_complexity Low_complexity 1 38 0 6953 199 56 29 chr12 16421317 16423022 -127363433 - L1 LINE L1 -2504 3824 2167 1319 151 84 74 chr12 16423022 16423306 -127363149 - AluJo SINE Alu -25 287 1 6953 199 56 29 chr12 16423306 16424143 -127362312 - L1 LINE L1 -4161 2167 1354 2214 77 10 33 chr12 16424143 16424443 -127362012 - AluY SINE Alu -18 293 1 6953 199 56 29 chr12 16424443 16425612 -127360843 - L1 LINE L1 -4974 1354 17 562 232 73 16 chr12 16425878 16426124 -127360331 + MER20B DNA MER1_type 524 783 0 188 222 22 0 chr12 16426125 16426170 -127360285 + MIR3 SINE MIR 154 199 -9 493 286 117 64 chr12 16426936 16427278 -127359177 + MLT1J LTR MaLR 109 468 -43 326 292 25 50 chr12 16427529 16427649 -127358806 + L2 LINE L2 3190 3306 -7 274 237 17 0 chr12 16428411 16428470 -127357985 + L2 LINE L2 3209 3268 -4 180 0 0 0 chr12 16428500 16428520 -127357935 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 16428571 16428593 -127357862 + AT_rich Low_complexity Low_complexity 1 22 0 1649 154 15 7 chr12 16428600 16428873 -127357582 + AluJo SINE Alu 19 293 -19 1800 188 0 0 chr12 16428877 16429185 -127357270 - AluJo SINE Alu -4 308 1 23 0 0 0 chr12 16429193 16429216 -127357239 + AT_rich Low_complexity Low_complexity 1 23 0 1531 40 25 5 chr12 16430230 16430429 -127356026 + L1PA8 LINE L1 5970 6172 0 226 211 0 0 chr12 16430559 16430611 -127355844 - MIR SINE MIR -94 168 117 438 265 41 27 chr12 16430797 16430944 -127355511 + MER110 LTR ERV1 256 404 -87 186 269 64 26 chr12 16431021 16431099 -127355356 - MIR SINE MIR -122 140 60 305 306 96 41 chr12 16431714 16431933 -127354522 - MIR SINE MIR -14 248 18 22 35 0 0 chr12 16432550 16432579 -127353876 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 16432655 16432683 -127353772 + AT_rich Low_complexity Low_complexity 1 28 0 2196 122 48 17 chr12 16433311 16433664 -127352791 + THE1B LTR MaLR 1 364 0 11194 87 17 21 chr12 16433664 16435251 -127351204 + THE1B-int LTR MaLR 1 1580 0 2112 138 48 20 chr12 16435251 16435605 -127350850 + THE1B LTR MaLR 1 364 0 764 163 14 14 chr12 16436023 16436323 -127350132 + CT-rich Low_complexity Low_complexity 1 300 0 586 226 17 90 chr12 16436323 16436391 -127350064 - AluJo/FRAM SINE Alu -2 300 229 2271 110 10 0 chr12 16436391 16436699 -127349756 + AluY SINE Alu 1 311 0 586 226 17 90 chr12 16436699 16436807 -127349648 - AluJo/FRAM SINE Alu -73 229 137 1983 122 7 10 chr12 16437615 16437903 -127348552 + AluSx SINE Alu 3 289 -23 321 158 0 0 chr12 16437849 16437906 -127348549 + Alu SINE Alu 236 328 0 236 0 28 28 chr12 16437906 16437942 -127348513 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 384 297 148 0 chr12 16437942 16438097 -127348358 - MIR3 SINE MIR -29 179 2 182 261 22 0 chr12 16438075 16438121 -127348334 - L2 LINE L2 -35 3237 3191 * 2317 109 0 3 chr12 16438197 16438509 -127347946 - AluSx SINE Alu -1 311 1 383 303 38 43 chr12 16438686 16438871 -127347584 + MIR SINE MIR 1 184 -78 1251 51 17 6 chr12 16439373 16439438 -127347017 + (TTTC)n Simple_repeat Simple_repeat 1 243 0 1251 51 17 6 chr12 16439438 16439614 -127346841 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1893 169 0 25 chr12 16439646 16439966 -127346489 - AluSx SINE Alu 0 312 1 25 0 0 0 chr12 16440029 16440054 -127346401 + AT_rich Low_complexity Low_complexity 1 25 0 2177 121 0 22 chr12 16440263 16440578 -127345877 + AluSx SINE Alu 1 308 -4 2110 98 0 24 chr12 16440814 16441125 -127345330 + AluSc SINE Alu 1 304 0 967 148 0 0 chr12 16441655 16441790 -127344665 - FLAM_C SINE Alu -5 138 4 188 255 20 0 chr12 16441806 16441857 -127344598 + MIR3 SINE MIR 139 190 -18 2368 77 34 0 chr12 16442966 16443263 -127343192 - AluSx SINE Alu -5 307 1 361 348 141 0 chr12 16443553 16443688 -127342767 + L2 LINE L2 3119 3272 0 278 154 0 77 chr12 16444726 16444791 -127341664 + MIR SINE MIR 203 262 0 2055 114 11 0 chr12 16445225 16445547 -127340908 - AluSx SINE Alu 0 325 1 490 234 234 7 chr12 16445549 16445690 -127340765 - MIR SINE MIR -74 188 16 339 320 13 11 chr12 16445707 16445839 -127340616 + MIR SINE MIR 15 143 -65 520 256 95 42 chr12 16445842 16445897 -127340558 - MIR3 SINE MIR -9 199 148 1946 143 55 27 chr12 16445897 16446262 -127340193 + THE1C LTR MaLR 1 375 0 520 256 95 42 chr12 16446262 16446374 -127340081 - MIR3 SINE MIR -60 148 23 255 191 0 0 chr12 16446388 16446435 -127340020 + MIR SINE MIR 157 203 -59 282 240 10 52 chr12 16446652 16446748 -127339707 + MIR SINE MIR 86 177 -85 21 0 0 0 chr12 16449257 16449278 -127337177 + AT_rich Low_complexity Low_complexity 1 21 0 2235 109 0 7 chr12 16451735 16452038 -127334417 - AluSx SINE Alu -11 301 1 209 277 18 98 chr12 16452362 16452474 -127333981 - L3 LINE CR1 -3 1574 1472 627 94 0 0 chr12 16452541 16452637 -127333818 + (TCCA)n Simple_repeat Simple_repeat 2 97 0 26 0 0 0 chr12 16453870 16453896 -127332559 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr12 16454092 16454118 -127332337 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2055 104 0 11 chr12 16454118 16454405 -127332050 - AluSx SINE Alu -28 284 1 2079 104 21 0 chr12 16456255 16456543 -127329912 + AluSp SINE Alu 20 313 0 1182 206 63 69 chr12 16456608 16457112 -127329343 + LTR24B LTR ERV1 70 570 -6 187 225 0 0 chr12 16457258 16457298 -127329157 - L2 LINE L2 -5 3308 3269 441 276 78 6 chr12 16458969 16459225 -127327230 - L1ME LINE L1 -606 5625 5352 262 280 32 80 chr12 16459285 16459824 -127326631 - L1ME LINE L1 -839 1737 1302 45 34 0 0 chr12 16460030 16460089 -127326366 + AT_rich Low_complexity Low_complexity 1 59 0 559 205 0 39 chr12 16460106 16460233 -127326222 - FLAM_A SINE Alu -3 139 18 297 0 0 0 chr12 16460708 16460741 -127325714 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 242 340 0 10 chr12 16461656 16461753 -127324702 + L2 LINE L2 2562 2657 -657 1369 207 37 12 chr12 16462072 16462395 -127324060 + MER58B DNA MER1_type 10 340 -1 3052 108 13 5 chr12 16462905 16463463 -127322992 + MER41B LTR ERV1 1 635 0 250 284 9 64 chr12 16464223 16464332 -127322123 - MIR3 SINE MIR -21 187 85 987 208 48 24 chr12 16464489 16464782 -127321673 + L1MCc LINE L1 19 318 -6105 344 172 25 42 chr12 16464798 16464954 -127321501 - MER3 DNA MER1_type -1 208 1 1075 282 118 62 chr12 16464963 16465668 -127320787 + L1MCc LINE L1 335 1078 -5345 317 271 85 34 chr12 16465674 16465792 -127320663 + L1MCc LINE L1 1110 1233 -5190 37 39 0 0 chr12 16465819 16465870 -127320585 + AT_rich Low_complexity Low_complexity 1 51 0 369 231 0 0 chr12 16465871 16465949 -127320506 + MER3 DNA MER1_type 41 118 -91 576 156 69 31 chr12 16465997 16466157 -127320298 + MER3 DNA MER1_type 2459 2624 0 2097 243 67 12 chr12 16466160 16466893 -127319562 + L1MCc LINE L1 2957 3729 -3212 193 296 19 0 chr12 16469554 16469608 -127316847 + MIR SINE MIR 93 147 -61 624 225 7 40 chr12 16469647 16469798 -127316657 - MIR SINE MIR -36 226 81 3928 135 39 43 chr12 16470007 16470778 -127315677 - L1MA5 LINE L1 -2 6298 5531 270 304 49 20 chr12 16471003 16471105 -127315350 + L2 LINE L2 3182 3286 -27 1417 248 118 71 chr12 16471661 16471885 -127314570 + L1ME LINE L1 6 218 -5852 462 65 0 0 chr12 16471885 16471947 -127314508 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 1417 248 118 71 chr12 16471947 16472549 -127313906 + L1ME LINE L1 218 871 -5199 27 0 0 26 chr12 16473675 16473698 -127312757 + AT_rich Low_complexity Low_complexity 1 24 -13 2467 58 0 0 chr12 16473698 16473993 -127312462 + AluY SINE Alu 1 295 -16 27 0 0 26 chr12 16473993 16474007 -127312448 + AT_rich Low_complexity Low_complexity 24 37 0 6755 15 0 1 chr12 16475157 16475966 -127310489 - L1PA2 LINE L1 -4 6151 5344 2537 47 0 3 chr12 16475966 16476310 -127310145 + L1PA2 LINE L1 5017 5359 -787 268 326 171 8 chr12 16478091 16478220 -127308235 - MIR3 SINE MIR -49 159 10 323 266 169 0 chr12 16478497 16478621 -127307834 - MIR SINE MIR -32 230 86 * 391 320 34 29 chr12 16478609 16478784 -127307671 + MIR SINE MIR 15 190 -72 2190 101 0 10 chr12 16478878 16479174 -127307281 - AluSx SINE Alu -8 304 12 215 330 56 42 chr12 16480244 16480459 -127305996 - L2 LINE L2 -527 2787 2570 219 225 0 0 chr12 16481028 16481068 -127305387 + (ATG)n Simple_repeat Simple_repeat 3 42 0 1375 163 0 5 chr12 16481313 16481534 -127304921 - AluJb SINE Alu -54 258 39 2928 6 0 0 chr12 16482182 16482500 -127303955 + AluYb8 SINE Alu 1 318 0 354 287 99 39 chr12 16482572 16482753 -127303702 - MIR SINE MIR -50 212 21 188 390 43 14 chr12 16484422 16484563 -127301892 - L2 LINE L2 -232 3040 2896 315 275 9 37 chr12 16484596 16484705 -127301750 - L2 LINE L2 -501 2813 2708 234 62 0 0 chr12 16485551 16485583 -127300872 + (CA)n Simple_repeat Simple_repeat 2 33 0 544 261 83 22 chr12 16485635 16485815 -127300640 - L2 LINE L2 -939 2375 2185 554 292 91 18 chr12 16485843 16486062 -127300393 - MIR SINE MIR -11 251 17 355 309 36 29 chr12 16486266 16486405 -127300050 + MIR SINE MIR 106 245 -17 367 297 76 0 chr12 16486885 16487030 -127299425 + MIR SINE MIR 94 249 -13 33 43 0 0 chr12 16488046 16488093 -127298362 + AT_rich Low_complexity Low_complexity 1 47 0 2068 102 22 41 chr12 16488330 16488645 -127297810 + AluSx SINE Alu 1 309 -3 197 336 52 43 chr12 16489595 16489711 -127296744 + L3 LINE CR1 1411 1527 -50 206 355 56 0 chr12 16490204 16490311 -127296144 - MIR SINE MIR -2 260 148 2066 123 3 7 chr12 16490565 16490857 -127295598 + AluSq SINE Alu 4 294 -19 186 328 97 46 chr12 16490986 16491122 -127295333 - L2 LINE L2 -557 2757 2607 2354 89 7 0 chr12 16491122 16491425 -127295030 + AluSc SINE Alu 1 305 -4 186 328 97 46 chr12 16491425 16491483 -127294972 - L2 LINE L2 -707 2607 2553 2610 153 26 12 chr12 16491484 16492076 -127294379 - MER4E LTR ERV1 0 766 1 303 352 28 28 chr12 16492104 16492286 -127294169 - MIR3 SINE MIR -7 201 20 22 0 0 0 chr12 16492492 16492514 -127293941 + AT_rich Low_complexity Low_complexity 1 22 0 189 301 48 24 chr12 16492648 16492731 -127293724 + MER5A DNA MER1_type 89 173 -16 * 385 243 0 0 chr12 16492660 16492734 -127293721 - MER5A DNA MER1_type -90 99 26 4279 261 69 40 chr12 16493288 16495559 -127290896 + L1MB1 LINE L1 2 2025 -3945 1336 179 24 72 chr12 16495588 16495926 -127290529 - MLT2B3 LTR ERVL 0 554 236 6045 197 43 61 chr12 16495927 16496976 -127289479 + L1MB1 LINE L1 2866 3933 -2059 1000 62 8 0 chr12 16496976 16497105 -127289350 - L1PA7 LINE L1 -2 6152 6023 6045 197 43 61 chr12 16497105 16499417 -127287038 + L1MB1 LINE L1 3933 5992 0 186 43 0 0 chr12 16499650 16499673 -127286782 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 952 140 0 0 chr12 16499706 16499842 -127286613 + AluSq/x SINE Alu 6 141 -172 8387 177 34 8 chr12 16500246 16502192 -127284263 - L1PBa LINE L1 -2259 4603 2607 1705 194 3 0 chr12 16502211 16502500 -127283955 - AluJb SINE Alu -22 290 1 210 290 0 81 chr12 16503018 16503080 -127283375 - MIR3 SINE MIR -8 200 144 923 143 13 0 chr12 16503124 16503278 -127283177 - L1MD3 LINE L1 -14 7981 7826 3478 196 52 19 chr12 16503281 16503576 -127282879 - L1MA9 LINE L1 -38 6274 5990 2734 120 14 9 chr12 16503576 16504008 -127282447 + MER57B LTR ERV1 1 434 0 3478 196 52 19 chr12 16504008 16504516 -127281939 - L1MA9 LINE L1 -322 5990 5444 189 0 0 0 chr12 16504631 16504652 -127281803 + (T)n Simple_repeat Simple_repeat 1 21 0 48 0 0 0 chr12 16506189 16506237 -127280218 + AT_rich Low_complexity Low_complexity 1 48 0 33 25 0 0 chr12 16506457 16506497 -127279958 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 16507298 16507319 -127279136 + AT_rich Low_complexity Low_complexity 1 21 0 274 223 27 45 chr12 16507708 16507820 -127278635 - L1ME4a LINE L1 -14 6107 5998 239 243 57 0 chr12 16507807 16507877 -127278578 - L1MB2 LINE L1 -192 5979 5906 * 203 315 0 0 chr12 16508055 16508109 -127278346 + MER5C DNA MER1_type 1 54 -270 1071 223 64 11 chr12 16508122 16508409 -127278046 - MLT1A1 LTR MaLR -5 360 24 12028 207 27 16 chr12 16508485 16512279 -127274176 - L1PA16 LINE L1 0 6869 3038 726 182 0 8 chr12 16512279 16512411 -127274044 - FLAM_C SINE Alu 0 133 3 12028 207 27 16 chr12 16512411 16512552 -127273903 - L1PA16 LINE L1 -3831 3038 2900 11206 166 32 27 chr12 16513488 16516563 -127269892 - L1PA16 LINE L1 -3929 2920 169 264 202 53 32 chr12 16516564 16516658 -127269797 + MER5C DNA MER1_type 103 198 -126 2618 36 0 0 chr12 16516670 16517005 -127269450 - L1P LINE L1 -2957 3189 2855 204 231 0 0 chr12 16517041 16517080 -127269375 + MER5C DNA MER1_type 283 321 -3 434 260 8 0 chr12 16518112 16518235 -127268220 - L1MB2 LINE L1 -330 5791 5668 5779 120 7 7 chr12 16519088 16519515 -127266940 + L1PA13 LINE L1 4601 5027 -1136 2208 100 0 29 chr12 16519515 16519826 -127266629 + AluY SINE Alu 1 302 -9 5779 120 7 7 chr12 16519826 16519977 -127266478 + L1PA13 LINE L1 5027 5177 -986 252 100 0 0 chr12 16519977 16520017 -127266438 + (CAA)n Simple_repeat Simple_repeat 3 42 0 5779 120 7 7 chr12 16520017 16521008 -127265447 + L1PA13 LINE L1 5176 6162 -1 1538 115 56 4 chr12 16522141 16522411 -127264044 - L1MA8 LINE L1 -6 6285 6002 733 344 104 61 chr12 16522669 16523846 -127262609 + L2 LINE L2 2050 3270 -2 1065 270 65 39 chr12 16523996 16524381 -127262074 + MLT1J LTR MaLR 109 503 -8 297 176 59 0 chr12 16524425 16524493 -127261962 - L1MC4 LINE L1 0 8042 7971 320 300 17 25 chr12 16525179 16525299 -127261156 + HAL1 LINE L1 1008 1126 -1381 243 262 73 37 chr12 16525418 16525609 -127260846 + L1M4 LINE L1 4163 4360 -1786 302 247 82 75 chr12 16525689 16525835 -127260620 + L1MEd LINE L1 1021 1167 -4952 25 31 0 0 chr12 16526072 16526104 -127260351 + AT_rich Low_complexity Low_complexity 1 32 0 245 190 17 0 chr12 16526170 16526228 -127260227 + MER53 DNA DNA 128 186 -3 1197 317 103 38 chr12 16526492 16527528 -127258927 + L1M4 LINE L1 4041 5144 -1002 621 242 110 41 chr12 16527536 16527755 -127258700 + MIR SINE MIR 8 241 -21 291 327 123 89 chr12 16528136 16528552 -127257903 + L2 LINE L2 2843 3272 0 21 0 0 0 chr12 16528773 16528794 -127257661 + AT_rich Low_complexity Low_complexity 1 21 0 345 346 38 6 chr12 16529682 16529841 -127256614 - MIR3 SINE MIR -3 205 42 221 362 38 0 chr12 16530306 16530411 -127256044 + MIR SINE MIR 37 145 -63 475 237 224 0 chr12 16531016 16531168 -127255287 - MIR SINE MIR -1 261 76 216 218 36 0 chr12 16531575 16531630 -127254825 + CT-rich Low_complexity Low_complexity 2 58 0 461 219 60 49 chr12 16531844 16532027 -127254428 + L1MC5 LINE L1 7728 7912 -49 720 264 89 17 chr12 16532070 16532305 -127254150 - MIR SINE MIR -10 252 1 198 310 56 0 chr12 16532349 16532420 -127254035 - MIR SINE MIR -26 236 162 2451 69 0 0 chr12 16532825 16533131 -127253324 - AluY SINE Alu -5 306 1 224 170 85 0 chr12 16534601 16534648 -127251807 - L2 LINE L2 -1 3271 3221 207 310 28 14 chr12 16535000 16535071 -127251384 - MER5C DNA MER1_type -250 74 3 520 224 161 12 chr12 16535341 16535502 -127250953 - MER5A DNA MER1_type -1 188 4 344 164 0 0 chr12 16535678 16535733 -127250722 + Tigger5 DNA MER2_type 1 55 -2268 255 233 211 0 chr12 16535725 16535815 -127250640 + Tigger5 DNA MER2_type 2215 2323 0 * 2520 64 0 0 chr12 16536378 16536675 -127249780 + AluY SINE Alu 1 297 -14 281 228 309 0 chr12 16536840 16536976 -127249479 - L2 LINE L2 -10 3303 3126 276 355 89 10 chr12 16537022 16537225 -127249230 - L3 LINE CR1 -171 1406 1188 2503 57 0 3 chr12 16537312 16537610 -127248845 + AluY SINE Alu 1 297 -14 25 0 0 0 chr12 16538344 16538369 -127248086 + AT_rich Low_complexity Low_complexity 1 25 0 278 255 0 0 chr12 16538655 16538706 -127247749 + MER5A DNA MER1_type 9 59 -130 186 43 0 0 chr12 16539154 16539177 -127247278 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1887 166 0 0 chr12 16539180 16539464 -127246991 - AluSx SINE Alu -28 284 1 1838 138 0 24 chr12 16539612 16539901 -127246554 + AluJb SINE Alu 14 295 -17 2185 119 3 0 chr12 16539904 16540214 -127246241 + AluSx SINE Alu 1 311 -1 2101 218 51 22 chr12 16542342 16542791 -127243664 - MLT2B1 LTR ERVL -58 462 1 2397 156 14 35 chr12 16543039 16543474 -127242981 + MSTA LTR MaLR 1 426 -2 30 27 0 0 chr12 16543898 16543935 -127242520 + AT_rich Low_complexity Low_complexity 1 37 0 249 359 51 0 chr12 16543999 16544116 -127242339 - L2 LINE L2 -20 3293 3171 182 263 0 0 chr12 16544130 16544168 -127242287 - MIR SINE MIR -62 146 109 2136 99 3 0 chr12 16544269 16544584 -127241871 + AluSx SINE Alu 1 316 0 201 273 0 45 chr12 16546867 16546933 -127239522 + MIR SINE MIR 48 110 -98 32 43 0 0 chr12 16546942 16546988 -127239467 + AT_rich Low_complexity Low_complexity 1 46 0 1650 189 71 14 chr12 16547831 16548185 -127238270 + MLT1A2 LTR MaLR 1 374 0 348 300 130 20 chr12 16548504 16548704 -127237751 + L1ME LINE L1 5264 5485 -636 2366 67 27 0 chr12 16548784 16549081 -127237374 - AluY SINE Alu -6 305 1 204 402 12 0 chr12 16549081 16549163 -127237292 - L2 LINE L2 -42 3271 3189 2281 93 0 0 chr12 16549394 16549696 -127236759 - AluSx SINE Alu -10 302 1 313 308 49 42 chr12 16549756 16549899 -127236556 - L2 LINE L2 -411 2903 2760 2248 117 0 0 chr12 16550590 16550889 -127235566 - AluSc SINE Alu -10 299 1 25 0 0 0 chr12 16551134 16551159 -127235296 + AT_rich Low_complexity Low_complexity 1 25 0 289 260 16 94 chr12 16551945 16552072 -127234383 + MLT1I LTR MaLR 289 405 -4 458 264 23 58 chr12 16552140 16552314 -127234141 + L2 LINE L2 3146 3313 0 274 359 51 18 chr12 16552488 16552705 -127233750 - L2 LINE L2 -337 2977 2754 1581 84 5 5 chr12 16552712 16552914 -127233541 + AluSx SINE Alu 6 207 -105 568 96 0 12 chr12 16552927 16553010 -127233445 - Alu SINE Alu -11 301 220 210 171 0 0 chr12 16553149 16553184 -127233271 + (TA)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr12 16553184 16553207 -127233248 + (GA)n Simple_repeat Simple_repeat 2 24 0 489 333 128 41 chr12 16553576 16553942 -127232513 - L2 LINE L2 -91 3222 2825 323 269 67 92 chr12 16553949 16554077 -127232378 + L1 LINE L1 4258 4388 -1758 1578 139 92 31 chr12 16554077 16554212 -127232243 + AluSx SINE Alu 1 126 -186 180 0 0 0 chr12 16554212 16554232 -127232223 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1578 139 92 31 chr12 16554232 16554390 -127232065 + AluSx SINE Alu 126 312 0 323 269 67 92 chr12 16554390 16554607 -127231848 + L1 LINE L1 4388 4594 -1552 294 358 88 20 chr12 16555081 16555229 -127231226 + MIR3 SINE MIR 17 174 -34 7575 25 5 1 chr12 16555404 16556300 -127230155 - L1PA3 LINE L1 0 6155 5257 181 269 0 90 chr12 16557054 16557121 -127229334 - MIR SINE MIR -118 144 84 247 361 65 0 chr12 16558981 16559089 -127227366 + MIR SINE MIR 99 213 -49 7820 128 20 24 chr12 16559259 16560562 -127225893 + HSMAR2 DNA Mariner 3 1300 -2 201 109 0 65 chr12 16560565 16560611 -127225844 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 2462 74 3 3 chr12 16561123 16561434 -127225021 - AluY SINE Alu 0 311 1 522 268 132 26 chr12 16562029 16562301 -127224154 - MLT1K LTR MaLR -21 567 267 438 346 107 7 chr12 16563714 16564003 -127222452 + L2 LINE L2 2215 2532 -782 266 317 102 61 chr12 16564046 16564292 -127222163 + MIR SINE MIR 6 261 -1 196 244 0 134 chr12 16564803 16564837 -127221618 + L2 LINE L2 3234 3252 -61 1442 233 93 92 chr12 16564837 16565002 -127221453 - MLT1E2 LTR MaLR 0 626 463 2154 43 6 93 chr12 16565002 16565326 -127221129 - AluY SINE Alu -15 296 1 1442 233 93 92 chr12 16565326 16565783 -127220672 - MLT1E2 LTR MaLR -163 463 3 196 244 0 134 chr12 16565783 16565830 -127220625 + L2 LINE L2 3252 3304 -9 319 294 83 0 chr12 16566162 16566271 -127220184 - L2 LINE L2 0 3272 3155 472 354 23 40 chr12 16566675 16567036 -127219419 - L2 LINE L2 -214 3058 2704 3666 65 23 0 chr12 16568042 16568515 -127217940 - L1PA7 LINE L1 0 6154 5671 2065 40 61 29 chr12 16569818 16570096 -127216359 + AluY SINE Alu 1 287 -24 1648 196 3 3 chr12 16570106 16570397 -127216058 - AluJo SINE Alu -21 291 1 246 281 0 0 chr12 16571324 16571381 -127215074 + L2 LINE L2 3216 3272 0 328 282 19 10 chr12 16571822 16571925 -127214530 - MIR SINE MIR -32 230 127 293 333 106 0 chr12 16573601 16573733 -127212722 + MIR SINE MIR 109 254 -8 2345 252 60 9 chr12 16575551 16576236 -127210219 - L1MD2 LINE L1 -2 6357 5646 433 254 102 0 chr12 16576334 16576452 -127210003 - MER94 DNA DNA -3 131 2 791 275 45 38 chr12 16580302 16580615 -127205840 - L2 LINE L2 0 3313 2999 216 208 21 0 chr12 16580610 16580658 -127205797 - MIR SINE MIR -1 261 213 * 1622 133 8 16 chr12 16581594 16581843 -127204612 + AluSx SINE Alu 64 310 -2 341 287 32 0 chr12 16581860 16581954 -127204501 - MER103 DNA DNA -4 162 66 534 287 60 31 chr12 16582194 16582419 -127204036 - MIR SINE MIR -10 252 15 731 284 126 30 chr12 16582884 16583359 -127203096 - LTR33 LTR ERVL 0 521 1 512 302 114 67 chr12 16583813 16584171 -127202284 + L2 LINE L2 2897 3271 -1 2262 87 3 0 chr12 16585669 16585956 -127200499 - AluSq SINE Alu -15 298 11 233 253 0 72 chr12 16586029 16586112 -127200343 + L2 LINE L2 2837 2913 -359 214 288 61 0 chr12 16588889 16588955 -127197500 + MIR SINE MIR 180 249 -13 28 79 0 0 chr12 16589630 16589693 -127196762 + AT_rich Low_complexity Low_complexity 1 63 0 2364 137 48 17 chr12 16591854 16592269 -127194186 + Tigger2a DNA MER2_type 5 432 -2 441 254 23 11 chr12 16592769 16592946 -127193509 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 357 24 0 0 chr12 16593689 16593731 -127192724 + (TA)n Simple_repeat Simple_repeat 2 43 0 734 327 100 66 chr12 16596984 16598036 -127188419 + L2 LINE L2 1715 2816 -497 2110 132 10 0 chr12 16598036 16598340 -127188115 + AluSq SINE Alu 1 307 -6 734 327 100 66 chr12 16598340 16598513 -127187942 + L2 LINE L2 2816 2982 -331 1153 261 37 8 chr12 16599024 16599399 -127187056 + L1ME1 LINE L1 5756 6141 -25 6684 200 37 11 chr12 16599468 16600896 -127185559 + L1 LINE L1 13 1478 -6087 5363 221 37 2 chr12 16600896 16602301 -127184154 + L1 LINE L1 3660 5113 -2452 680 115 36 14 chr12 16602302 16602441 -127184014 + GA-rich Low_complexity Low_complexity 3 144 0 198 276 66 13 chr12 16602441 16602517 -127183938 - L2 LINE L2 -831 2483 2404 666 202 0 17 chr12 16602526 16602645 -127183810 + FRAM SINE Alu 36 152 -24 904 252 33 4 chr12 16602677 16602919 -127183536 - L2 LINE L2 -931 2383 2135 2026 188 59 5 chr12 16604668 16605072 -127181383 - MSTB LTR MaLR 0 426 1 1875 164 14 8 chr12 16605165 16605518 -127180937 + L1MA6 LINE L1 5941 6295 -5 18557 176 18 18 chr12 16605602 16609334 -127177121 + L1M1 LINE L1 17 3749 -3816 1741 36 3 2 chr12 16609335 16609559 -127176896 - L1PA5 LINE L1 -163 5991 5764 14124 166 39 13 chr12 16609724 16610630 -127175825 - L1MA3 LINE L1 0 7724 6843 1120 60 13 0 chr12 16610630 16610779 -127175676 - L1PA4 LINE L1 -3 6152 6002 14124 166 39 13 chr12 16610779 16612541 -127173914 - L1MA3 LINE L1 -881 6843 5128 1713 154 70 22 chr12 16612541 16612899 -127173556 + THE1C LTR MaLR 1 375 0 9668 119 43 21 chr12 16612899 16614446 -127172009 + THE1C-int LTR MaLR 1 1580 0 1611 178 67 28 chr12 16614448 16614807 -127171648 + THE1C LTR MaLR 3 375 0 14124 166 39 13 chr12 16614807 16617500 -127168955 - L1MA3 LINE L1 -2596 5128 2195 1200 194 115 10 chr12 16617500 16617870 -127168585 - MSTA LTR MaLR 0 428 9 5148 184 44 9 chr12 16617877 16619350 -127167105 - L1MA3 LINE L1 -5365 2200 15 968 194 83 17 chr12 16620485 16620773 -127165682 - MER69 DNA AcHobo -26 2500 2194 497 336 77 4 chr12 16620875 16621134 -127165321 - ERVL LTR ERVL -1077 4687 4410 * 675 302 55 39 chr12 16621112 16621496 -127164959 - ERVL LTR ERVL -3178 2586 2197 377 200 12 12 chr12 16621531 16621606 -127164849 - MER44D DNA MER2_type -9 600 526 406 213 9 65 chr12 16621606 16621714 -127164741 + Tigger3b DNA MER2_type 1 102 -1129 * 4896 124 50 25 chr12 16621712 16622361 -127164094 + Tigger3b DNA MER2_type 274 954 -2074 2019 123 0 40 chr12 16622361 16622661 -127163794 - AluSx SINE Alu -24 288 1 4896 124 50 25 chr12 16622661 16622930 -127163525 + Tigger3b DNA MER2_type 954 1215 -16 1813 244 25 17 chr12 16622930 16623446 -127163009 + L1ME1 LINE L1 5642 6161 -5 525 168 15 84 chr12 16623486 16623617 -127162838 - L1PA16 LINE L1 -1 6165 6044 898 161 52 35 chr12 16624097 16624194 -127162261 + MER44D DNA MER2_type 1 95 -2396 357 24 0 0 chr12 16624194 16624236 -127162219 + (TG)n Simple_repeat Simple_repeat 1 42 0 898 161 52 35 chr12 16624236 16624368 -127162087 + MER44D DNA MER2_type 95 504 -105 2183 254 67 7 chr12 16624370 16625176 -127161279 - L1M4 LINE L1 -774 5441 4588 5690 261 66 19 chr12 16625208 16625826 -127160629 - L1MEc LINE L1 -2413 3802 3214 1054 187 9 57 chr12 16625826 16626056 -127160399 - MER20 DNA MER1_type 0 219 1 5690 261 66 19 chr12 16626056 16628991 -127157464 - L1MEc LINE L1 -3001 3214 37 1096 264 63 9 chr12 16628991 16629454 -127157001 - Charlie7 DNA MER1_type -352 2260 1773 3588 23 1 0 chr12 16629454 16629944 -127156511 - L1P LINE L1 -728 5427 4937 6384 6 0 1 chr12 16629944 16630653 -127155802 + L1PA2 LINE L1 5442 6152 -3 591 197 14 20 chr12 16630659 16630806 -127155649 - Charlie7 DNA MER1_type -823 1789 1644 678 251 170 19 chr12 16630816 16631139 -127155316 - Charlie7 DNA MER1_type -1834 778 407 476 265 55 32 chr12 16631158 16631377 -127155078 - Charlie7 DNA MER1_type -2338 274 51 25 31 0 0 chr12 16632507 16632539 -127153916 + AT_rich Low_complexity Low_complexity 1 32 0 726 270 42 12 chr12 16633125 16633384 -127153071 - LTR16A1 LTR ERVL 0 457 191 252 284 14 0 chr12 16633460 16633534 -127152921 - LTR16A1 LTR ERVL -378 79 5 962 252 37 8 chr12 16634546 16634788 -127151667 + MIR SINE MIR 6 254 -8 393 133 0 0 chr12 16635643 16635718 -127150737 + (CA)n Simple_repeat Simple_repeat 2 76 0 349 277 102 23 chr12 16636106 16636283 -127150172 - MIR SINE MIR 0 262 72 1802 120 66 15 chr12 16637718 16637992 -127148463 + AluSx SINE Alu 24 311 -1 22 0 0 0 chr12 16638335 16638357 -127148098 + AT_rich Low_complexity Low_complexity 1 22 0 415 301 24 8 chr12 16638823 16638946 -127147509 + MER5A DNA MER1_type 65 189 0 707 169 29 7 chr12 16638968 16639104 -127147351 - MER5B DNA MER1_type -39 139 1 235 204 60 17 chr12 16639654 16639737 -127146718 + MIR SINE MIR 91 141 -67 2571 41 0 0 chr12 16640099 16640393 -127146062 + AluY SINE Alu 1 294 -17 328 153 33 20 chr12 16640393 16640543 -127145912 + (TA)n Simple_repeat Simple_repeat 1 152 0 252 258 15 30 chr12 16640741 16640807 -127145648 - MER91A DNA MER1_type -97 99 35 518 328 84 42 chr12 16640909 16641217 -127145238 + MLT1K LTR MaLR 159 479 -109 219 279 16 126 chr12 16641268 16641522 -127144933 + L2 LINE L2 2440 2665 -649 293 184 0 0 chr12 16641674 16641723 -127144732 + Alu SINE Alu 1 49 -254 275 214 265 31 chr12 16642741 16642839 -127143616 + L2 LINE L2 3192 3312 -1 290 287 74 8 chr12 16643101 16643223 -127143232 + MIR SINE MIR 119 248 -14 279 0 0 0 chr12 16644656 16644687 -127141768 + (TG)n Simple_repeat Simple_repeat 1 31 0 401 374 55 24 chr12 16645130 16645552 -127140903 + L2 LINE L2 1703 2137 -1177 996 358 32 42 chr12 16645597 16646299 -127140156 + ERVL LTR ERVL 2072 2767 -2997 2065 156 23 59 chr12 16646299 16646742 -127139713 + MSTC LTR MaLR 2 428 0 996 358 32 42 chr12 16646742 16646827 -127139628 + ERVL LTR ERVL 2767 2851 -2913 1851 346 66 37 chr12 16647008 16647746 -127138709 + ERVL LTR ERVL 3388 4104 -1660 2109 147 0 0 chr12 16647746 16648058 -127138397 - AluSx SINE Alu 0 312 1 1851 346 66 37 chr12 16648058 16649199 -127137256 + ERVL LTR ERVL 4104 5383 -381 1660 216 27 16 chr12 16649327 16649697 -127136758 + MLT1A2 LTR MaLR 1 374 0 2207 116 69 17 chr12 16649889 16650235 -127136220 + THE1B LTR MaLR 1 364 0 2423 63 0 13 chr12 16651092 16651394 -127135061 + AluY SINE Alu 1 298 -13 409 162 0 0 chr12 16651394 16651462 -127134993 - AluJ/FRAM SINE Alu -14 298 231 202 332 252 7 chr12 16652777 16653051 -127133404 - L2 LINE L2 0 3272 2932 386 162 14 0 chr12 16653885 16653959 -127132496 + MER116 DNA Mariner 2 76 -4 186 43 0 0 chr12 16654024 16654047 -127132408 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 527 312 108 25 chr12 16654050 16654412 -127132043 - L1MEd LINE L1 -5101 1018 627 212 0 36 0 chr12 16654615 16654643 -127131812 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 2222 108 3 3 chr12 16654659 16654966 -127131489 - AluSc SINE Alu -2 307 1 1404 234 29 35 chr12 16655786 16656162 -127130293 + MLT1A2 LTR MaLR 1 374 0 378 127 7 7 chr12 16656186 16656258 -127130197 + L1MA7 LINE L1 5600 5671 -512 2928 128 15 19 chr12 16656258 16656719 -127129736 + MER4D LTR ERV1 1 459 -413 1898 154 10 3 chr12 16656719 16657025 -127129430 + MER4D LTR ERV1 596 903 0 2894 169 26 35 chr12 16657064 16657669 -127128786 + L1MA7 LINE L1 5689 6288 -3 240 59 0 0 chr12 16658305 16658339 -127128116 + (TA)n Simple_repeat Simple_repeat 2 35 0 184 250 115 39 chr12 16658520 16658624 -127127831 - MIR SINE MIR -70 192 81 255 302 85 31 chr12 16660302 16660431 -127126024 - MIR SINE MIR -78 184 49 1777 243 126 24 chr12 16660531 16660946 -127125509 - L1MB3 LINE L1 0 6994 6622 1926 128 3 38 chr12 16660946 16661259 -127125196 - AluSx SINE Alu -8 304 3 1777 243 126 24 chr12 16661259 16661763 -127124692 - L1MB3 LINE L1 -372 6622 5987 * 3870 260 82 28 chr12 16661733 16663573 -127122882 - L1MB3 LINE L1 -2444 4513 2506 1940 187 17 14 chr12 16663594 16663952 -127122503 + MLT1A1 LTR MaLR 6 364 -1 5442 214 84 39 chr12 16663957 16664708 -127121747 - L1MB3 LINE L1 -4566 2393 1677 2152 127 0 16 chr12 16664708 16665023 -127121432 - AluSg SINE Alu 0 310 1 5442 214 84 39 chr12 16665023 16666237 -127120218 - L1MB3 LINE L1 -5282 1677 1 203 229 0 0 chr12 16666814 16666862 -127119593 + L2 LINE L2 3263 3310 -3 2223 144 13 13 chr12 16668454 16668829 -127117626 - THE1C LTR MaLR 0 375 1 2204 99 3 3 chr12 16668968 16669262 -127117193 + AluSx SINE Alu 2 295 -17 250 211 0 0 chr12 16669346 16669398 -127117057 - L1ME4a LINE L1 -2 6119 6068 301 261 80 0 chr12 16669565 16669653 -127116802 - L1ME4a LINE L1 -2018 5790 5696 338 229 67 0 chr12 16669690 16669795 -127116660 - L1ME4a LINE L1 -437 5684 5573 2081 121 0 0 chr12 16670440 16670730 -127115725 - AluSx SINE Alu -22 290 1 1293 278 92 66 chr12 16671903 16672019 -127114436 - L2 LINE L2 -3 3310 3198 182 33 67 0 chr12 16672019 16672049 -127114406 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1293 278 92 66 chr12 16672049 16672983 -127113472 - L2 LINE L2 -115 3198 2229 722 305 24 47 chr12 16676797 16677095 -127109360 - L3 LINE CR1 -571 1006 716 21 57 0 0 chr12 16677517 16677552 -127108903 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 16677721 16677744 -127108711 + AT_rich Low_complexity Low_complexity 1 23 0 2287 105 0 10 chr12 16679034 16679347 -127107108 - AluSg SINE Alu 0 310 1 198 263 0 0 chr12 16679516 16679573 -127106882 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 245 233 137 0 chr12 16679751 16679824 -127106631 - MIR SINE MIR -164 98 16 200 351 14 0 chr12 16680267 16680341 -127106114 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 236 208 0 0 chr12 16680341 16680394 -127106061 - LTR66 LTR ERVL -164 446 394 549 220 0 8 chr12 16680733 16680851 -127105604 - MLT1D LTR MaLR 0 505 389 1333 113 10 41 chr12 16680851 16681217 -127105238 + MSTA LTR MaLR 1 428 0 1137 243 35 49 chr12 16681217 16681582 -127104873 - MLT1D LTR MaLR -112 393 34 184 100 50 33 chr12 16681769 16681829 -127104626 + (TTA)n Simple_repeat Simple_repeat 2 62 0 25 51 0 0 chr12 16681848 16681887 -127104568 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 16682938 16682959 -127103496 + AT_rich Low_complexity Low_complexity 1 21 0 1651 110 38 19 chr12 16683530 16683794 -127102661 + AluSx SINE Alu 29 297 -15 210 320 187 20 chr12 16684545 16684695 -127101760 - MIR SINE MIR 0 262 88 1824 121 26 11 chr12 16684714 16684986 -127101469 + AluSx SINE Alu 3 278 -34 1865 133 136 24 chr12 16685196 16685579 -127100876 + MSTA LTR MaLR 1 426 -2 757 290 147 36 chr12 16686806 16686878 -127099577 - L1ME3A LINE L1 -297 5873 5810 869 177 32 170 chr12 16686878 16687155 -127099300 + MER8 DNA MER2_type 1 239 0 757 290 147 36 chr12 16687155 16687549 -127098906 - L1ME3A LINE L1 -360 5810 5461 2151 202 33 2 chr12 16687549 16687999 -127098456 - MLT1C LTR MaLR -3 464 1 757 290 147 36 chr12 16687999 16689057 -127097398 - L1ME3A LINE L1 -709 5461 4178 404 247 11 0 chr12 16689064 16689153 -127097302 - L1MEc LINE L1 -1213 5728 5639 1131 244 61 46 chr12 16689153 16689498 -127096957 - MLT1A1 LTR MaLR 0 365 16 6259 183 45 2 chr12 16689513 16690789 -127095666 - L1MEc LINE L1 -1306 5635 4304 2527 259 58 40 chr12 16690805 16691387 -127095068 - L1MEc LINE L1 -2920 4021 3451 2209 121 0 6 chr12 16691387 16691701 -127094754 - AluSx SINE Alu 0 312 1 2527 259 58 40 chr12 16691701 16692855 -127093600 - L1MEc LINE L1 -3490 3451 2307 627 262 81 61 chr12 16692929 16693474 -127092981 - L1MEc LINE L1 -4869 2072 1517 28 61 0 0 chr12 16693641 16693690 -127092765 + AT_rich Low_complexity Low_complexity 1 49 0 514 351 50 29 chr12 16693788 16694067 -127092388 - L1MEc LINE L1 -5824 599 315 283 329 0 46 chr12 16694244 16694396 -127092059 - L2 LINE L2 -1 3312 3168 421 227 8 34 chr12 16694494 16694613 -127091842 - L2 LINE L2 -1305 2009 1894 204 262 66 16 chr12 16694836 16694897 -127091558 - MIR SINE MIR -119 89 26 333 172 0 0 chr12 16695675 16695739 -127090716 + (CA)n Simple_repeat Simple_repeat 2 65 0 447 63 0 0 chr12 16697116 16697179 -127089276 + (CA)n Simple_repeat Simple_repeat 2 64 0 285 220 20 10 chr12 16698237 16698337 -127088118 + CT-rich Low_complexity Low_complexity 5 105 0 318 239 122 52 chr12 16698362 16698575 -127087880 - MER5C DNA MER1_type -39 285 58 231 267 67 38 chr12 16698762 16698867 -127087588 - MLT1K LTR MaLR 0 588 481 684 362 37 28 chr12 16699685 16700149 -127086306 - L2 LINE L2 -622 2692 2225 1514 201 0 34 chr12 16700758 16701051 -127085404 + AluJo SINE Alu 9 291 -21 225 363 55 14 chr12 16701426 16701572 -127084883 - L2 LINE L2 -1069 2245 2094 198 143 0 0 chr12 16701917 16701952 -127084503 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 370 250 11 0 chr12 16703867 16703955 -127082500 + MIR SINE MIR 63 151 -111 306 284 60 17 chr12 16704046 16704162 -127082293 + MLT1J2 LTR MaLR 58 178 -272 442 326 15 0 chr12 16705415 16705547 -127080908 + L2 LINE L2 3138 3271 -1 188 294 88 0 chr12 16705650 16705718 -127080737 + MIR SINE MIR 77 150 -58 1943 144 10 10 chr12 16706604 16706902 -127079553 + AluSx SINE Alu 1 298 -14 5390 120 16 27 chr12 16707128 16708012 -127078443 + L1PB1 LINE L1 5274 6147 -4 1186 229 53 15 chr12 16709531 16709871 -127076584 - MLT1B LTR MaLR -5 385 33 23 0 0 0 chr12 16710489 16710512 -127075943 + AT_rich Low_complexity Low_complexity 1 23 0 22 89 0 0 chr12 16711627 16711672 -127074783 + AT_rich Low_complexity Low_complexity 1 45 0 207 179 0 0 chr12 16712187 16712226 -127074229 + (TG)n Simple_repeat Simple_repeat 2 40 0 1009 251 60 36 chr12 16713774 16714304 -127072151 - L1ME LINE L1 -3965 2296 1754 2455 82 3 0 chr12 16714304 16714610 -127071845 - AluSp SINE Alu -4 309 3 758 281 54 62 chr12 16714858 16715621 -127070834 - L1ME LINE L1 -4720 1360 618 1141 187 107 64 chr12 16715621 16715995 -127070460 + MLT1B LTR MaLR 1 390 0 758 281 54 62 chr12 16715995 16716094 -127070361 - L1ME LINE L1 -5462 618 520 6420 18 0 36 chr12 16716351 16717137 -127069318 - L1PA2 LINE L1 -2 6153 5396 228 286 14 0 chr12 16717418 16717488 -127068967 - L1ME LINE L1 -5939 131 61 1236 255 117 47 chr12 16718304 16719049 -127067406 + HAL1b LINE L1 535 1331 -17 2050 140 0 0 chr12 16719600 16719892 -127066563 - AluSx SINE Alu -20 292 1 312 131 0 33 chr12 16719895 16719956 -127066499 - AluSp SINE Alu -170 133 75 21 0 0 0 chr12 16720034 16720055 -127066400 + AT_rich Low_complexity Low_complexity 1 21 0 269 314 32 24 chr12 16720169 16720293 -127066162 + L2 LINE L2 2178 2302 -1012 358 307 31 110 chr12 16720361 16720589 -127065866 - L2 LINE L2 0 3272 3063 263 278 42 62 chr12 16720980 16721124 -127065331 + MIR SINE MIR 91 231 -31 283 301 169 0 chr12 16721296 16721432 -127065023 + MIR SINE MIR 52 210 -52 612 296 152 76 chr12 16723881 16724672 -127061783 + L3 LINE CR1 690 1540 -37 274 303 56 0 chr12 16725374 16725463 -127060992 + MIR SINE MIR 163 256 -6 198 383 32 21 chr12 16726019 16726113 -127060342 + L2 LINE L2 3174 3268 -4 533 325 68 46 chr12 16727365 16727864 -127058591 + L2 LINE L2 1709 2218 -1096 258 266 38 25 chr12 16727881 16727960 -127058495 + MIR3 SINE MIR 113 192 -16 944 171 0 13 chr12 16728253 16728411 -127058044 - FRAM SINE Alu -21 155 1 377 216 240 0 chr12 16728792 16728917 -127057538 + MIR SINE MIR 90 244 -18 432 55 0 0 chr12 16729062 16729117 -127057338 + (CA)n Simple_repeat Simple_repeat 1 55 0 2918 6 0 0 chr12 16730752 16731068 -127055387 + AluYb8 SINE Alu 1 316 -2 2889 184 21 10 chr12 16731284 16731782 -127054673 - L1MA7 LINE L1 0 6291 5783 396 0 0 0 chr12 16731782 16731826 -127054629 + (TG)n Simple_repeat Simple_repeat 2 45 0 2889 184 21 10 chr12 16731826 16731931 -127054524 - L1MA7 LINE L1 -508 5783 5681 182 316 18 0 chr12 16733214 16733271 -127053184 - MIR SINE MIR -114 94 37 191 100 0 50 chr12 16734347 16734387 -127052068 + (TATG)n Simple_repeat Simple_repeat 2 39 0 187 200 0 0 chr12 16734431 16734466 -127051989 - L2 LINE L2 -5 3308 3274 290 302 52 10 chr12 16734513 16734609 -127051846 + L2 LINE L2 3196 3295 -18 190 325 13 26 chr12 16734703 16734780 -127051675 - L3 LINE CR1 -93 1484 1409 1691 183 66 29 chr12 16734803 16735180 -127051275 - MLT2C1 LTR ERVL 0 397 7 1021 345 98 23 chr12 16735192 16735646 -127050809 - L3 LINE CR1 -184 1393 874 243 0 0 0 chr12 16735646 16735673 -127050782 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1021 345 98 23 chr12 16735673 16735871 -127050584 - L3 LINE CR1 -703 874 692 879 249 0 0 chr12 16736426 16736615 -127049840 - MER5A DNA MER1_type 0 189 1 339 271 74 8 chr12 16736699 16736821 -127049634 - L2 LINE L2 -23 3290 3161 632 212 67 12 chr12 16737996 16738161 -127048294 - L1MD3 LINE L1 -10 7985 7812 5034 187 25 20 chr12 16738600 16739722 -127046733 - L1MA10 LINE L1 -1067 5079 3953 5472 172 5 44 chr12 16739725 16741016 -127045439 + L1MA10 LINE L1 5086 6333 -1 329 286 38 53 chr12 16741204 16741337 -127045118 + MIR SINE MIR 70 200 -62 263 147 0 77 chr12 16741393 16741563 -127044892 + (TTA)n Simple_repeat Simple_repeat 1 157 0 513 291 92 39 chr12 16741596 16741802 -127044653 - MIR SINE MIR -23 239 23 183 204 0 0 chr12 16743403 16743452 -127043003 + (TG)n Simple_repeat Simple_repeat 2 50 0 424 193 45 142 chr12 16743887 16744063 -127042392 + MLT1D-int LTR MaLR 1213 1371 0 1521 234 76 39 chr12 16744063 16744524 -127041931 + MLT1D LTR MaLR 1 478 -27 532 290 9 55 chr12 16745453 16745670 -127040785 - MIR SINE MIR -24 238 32 423 275 36 99 chr12 16745878 16746100 -127040355 + MIR SINE MIR 37 244 -18 507 33 0 0 chr12 16747498 16747559 -127038896 + (CA)n Simple_repeat Simple_repeat 2 62 0 3166 216 102 42 chr12 16749592 16750627 -127035828 + L1MC4a LINE L1 6711 7808 0 2356 156 57 0 chr12 16750699 16751104 -127035351 - MSTA LTR MaLR 0 428 1 286 340 123 33 chr12 16751487 16751699 -127034756 - L2 LINE L2 -433 2881 2651 491 222 0 20 chr12 16751981 16752080 -127034375 + MLT1E LTR MaLR 67 163 -430 983 285 96 0 chr12 16752094 16752375 -127034080 + MLT1E LTR MaLR 286 593 0 1446 132 45 0 chr12 16752678 16752898 -127033557 - MER30 DNA MER1_type 0 230 1 930 287 125 34 chr12 16753398 16754061 -127032394 - L2 LINE L2 -3 3310 2602 343 337 65 35 chr12 16754919 16755088 -127031367 + MIR3 SINE MIR 24 197 -11 2108 129 0 0 chr12 16755252 16755547 -127030908 + AluSq SINE Alu 1 295 -18 304 179 26 0 chr12 16756488 16756566 -127029889 + CT-rich Low_complexity Low_complexity 3 82 0 23 78 0 0 chr12 16756679 16756730 -127029725 + AT_rich Low_complexity Low_complexity 1 51 0 37 23 0 0 chr12 16756854 16756898 -127029557 + AT_rich Low_complexity Low_complexity 1 44 0 358 280 108 19 chr12 16757041 16757255 -127029200 - L1M4 LINE L1 -2693 3453 3221 950 147 82 27 chr12 16757265 16757449 -127029006 - L1PA16 LINE L1 0 6166 5973 302 239 28 14 chr12 16757743 16757814 -127028641 + MER5B DNA MER1_type 1 72 -106 22 35 0 0 chr12 16759388 16759417 -127027038 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 16759694 16759722 -127026733 + AT_rich Low_complexity Low_complexity 1 28 0 1612 180 3 22 chr12 16760002 16760318 -127026137 - AluJo SINE Alu -2 310 1 2174 117 3 0 chr12 16760753 16761053 -127025402 + AluSp SINE Alu 1 301 -12 917 232 50 9 chr12 16761416 16761636 -127024819 - MIR SINE MIR 0 262 34 21 0 0 0 chr12 16764250 16764271 -127022184 + AT_rich Low_complexity Low_complexity 1 21 0 443 224 0 90 chr12 16764459 16764593 -127021862 - MIR SINE MIR -110 152 31 21 36 0 0 chr12 16765112 16765140 -127021315 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr12 16765251 16765275 -127021180 + (A)n Simple_repeat Simple_repeat 1 24 0 2065 142 0 0 chr12 16765644 16765940 -127020515 - AluSx SINE Alu -16 296 1 21 0 0 0 chr12 16766172 16766193 -127020262 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr12 16766314 16766363 -127020092 + AT_rich Low_complexity Low_complexity 1 49 0 300 373 4 66 chr12 16766561 16766805 -127019650 + L3 LINE CR1 985 1213 -364 5438 228 55 47 chr12 16766965 16767722 -127018733 + L1MB8 LINE L1 16 765 -5881 495 0 0 0 chr12 16767722 16767777 -127018678 + (CA)n Simple_repeat Simple_repeat 2 56 0 5438 228 55 47 chr12 16767777 16768613 -127017842 + L1MB8 LINE L1 765 1595 -5051 198 0 0 0 chr12 16768613 16768635 -127017820 + (CA)n Simple_repeat Simple_repeat 2 23 0 5438 228 55 47 chr12 16768635 16769142 -127017313 + L1MB8 LINE L1 1595 2096 -4550 4888 183 34 18 chr12 16769161 16771144 -127015311 + L1MB8 LINE L1 4658 6670 -6 903 162 21 90 chr12 16772660 16772894 -127013561 - L1MC1 LINE L1 0 6333 6116 23 0 0 0 chr12 16772923 16772946 -127013509 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr12 16773143 16773190 -127013265 + (CA)n Simple_repeat Simple_repeat 2 48 0 1872 193 95 25 chr12 16773400 16773886 -127012569 - MLT2B1 LTR ERVL 0 520 1 207 95 71 0 chr12 16774089 16774131 -127012324 + A-rich Low_complexity Low_complexity 2 46 0 238 300 136 0 chr12 16774207 16774317 -127012138 + MIR SINE MIR 63 187 -75 340 298 46 71 chr12 16774596 16774799 -127011656 - MIR SINE MIR -50 212 16 801 183 61 17 chr12 16775559 16775739 -127010716 + MER5A DNA MER1_type 1 188 -1 718 0 0 0 chr12 16776173 16776257 -127010198 + L1PA2 LINE L1 6069 6152 -3 603 112 0 0 chr12 16776519 16776617 -127009838 + (CCA)n Simple_repeat Simple_repeat 1 98 0 186 329 12 24 chr12 16776619 16776701 -127009754 - MIR SINE MIR -109 153 73 530 256 55 24 chr12 16779017 16779181 -127007274 + LTR33A LTR ERVL 18 186 -337 614 275 138 4 chr12 16779313 16779560 -127006895 + LTR33A LTR ERVL 244 523 0 467 305 46 0 chr12 16780234 16780365 -127006090 + MIR3 SINE MIR 39 175 -33 569 286 85 5 chr12 16781133 16781322 -127005133 + MIR SINE MIR 48 255 -7 213 39 0 0 chr12 16781322 16781348 -127005107 + (TTA)n Simple_repeat Simple_repeat 2 27 0 382 340 13 13 chr12 16781355 16781505 -127004950 + L2 LINE L2 3164 3313 0 * 1961 138 0 3 chr12 16781881 16782254 -127004201 - AluSc SINE Alu 0 374 3 21 0 0 0 chr12 16782449 16782470 -127003985 + AT_rich Low_complexity Low_complexity 1 21 0 240 274 52 89 chr12 16782478 16782613 -127003842 - MIR SINE MIR -50 212 83 2409 66 0 3 chr12 16783268 16783569 -127002886 - AluY SINE Alu -11 300 1 3382 197 44 95 chr12 16783815 16784243 -127002212 + L1MC4 LINE L1 6918 7366 -676 180 0 0 0 chr12 16784243 16784263 -127002192 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 3382 197 44 95 chr12 16784263 16784529 -127001926 + L1MC4 LINE L1 7366 7644 -398 1918 176 0 0 chr12 16784529 16784835 -127001620 + AluJo SINE Alu 1 306 -6 3382 197 44 95 chr12 16784835 16785318 -127001137 + L1MC4 LINE L1 7644 8036 -6 545 272 77 35 chr12 16786158 16786327 -127000128 - MIR SINE MIR -60 202 27 1313 199 63 102 chr12 16786712 16787108 -126999347 + Charlie4a DNA MER1_type 4 377 -1584 620 13 0 0 chr12 16787108 16787184 -126999271 - L1PA2 LINE L1 -6 6149 6074 1313 199 63 102 chr12 16787184 16787309 -126999146 + Charlie4a DNA MER1_type 377 505 -3 1899 179 89 21 chr12 16788912 16789349 -126997106 - MLT1C LTR MaLR 0 467 1 441 284 222 0 chr12 16792361 16792562 -126993893 + MIR SINE MIR 19 262 0 515 269 82 12 chr12 16792579 16792750 -126993705 - MIR SINE MIR -31 231 49 27 0 0 0 chr12 16792843 16792870 -126993585 + AT_rich Low_complexity Low_complexity 1 27 0 282 284 49 0 chr12 16793162 16793243 -126993212 + MER117 DNA MER1_type 77 161 -36 198 335 72 26 chr12 16793531 16793683 -126992772 + L2 LINE L2 3075 3233 -39 22 70 0 0 chr12 16793728 16793771 -126992684 + AT_rich Low_complexity Low_complexity 1 43 0 2555 58 0 3 chr12 16793942 16794254 -126992201 + AluY SINE Alu 1 311 0 22 0 0 0 chr12 16796021 16796043 -126990412 + AT_rich Low_complexity Low_complexity 1 22 0 400 319 30 24 chr12 16796452 16796618 -126989837 + MIR SINE MIR 1 167 -95 448 267 33 0 chr12 16796648 16796768 -126989687 + MER94 DNA DNA 1 124 -10 1795 268 113 6 chr12 16798399 16799037 -126987418 + L2 LINE L2 1791 2496 -818 1551 232 45 49 chr12 16799047 16799535 -126986920 + L2 LINE L2 2827 3312 -1 268 261 15 0 chr12 16799552 16799617 -126986838 + L2 LINE L2 3207 3272 0 345 247 36 0 chr12 16799672 16799838 -126986617 + (TA)n Simple_repeat Simple_repeat 2 173 0 558 246 15 35 chr12 16801331 16801534 -126984921 + L1MC3 LINE L1 1 199 -5846 2294 215 49 63 chr12 16801546 16801754 -126984701 + L1MC3 LINE L1 1093 1302 -5443 1463 118 0 0 chr12 16801754 16801958 -126984497 + AluY SINE Alu 99 302 -9 2294 215 49 63 chr12 16801958 16802782 -126983673 + L1MC3 LINE L1 1302 2312 -4433 1064 239 12 16 chr12 16802783 16803026 -126983429 - MLT1A1 LTR MaLR -123 242 1 244 255 207 0 chr12 16803034 16803179 -126983276 + L1MC3 LINE L1 3928 4102 -2462 * 4063 249 21 27 chr12 16803168 16804483 -126981972 + L1MC3 LINE L1 4445 5752 -812 * 10629 197 51 29 chr12 16804478 16808200 -126978255 + L1MC1 LINE L1 942 4581 -2032 1994 153 13 0 chr12 16808200 16808508 -126977947 + AluSx SINE Alu 1 312 0 10629 197 51 29 chr12 16808508 16809927 -126976528 + L1MC1 LINE L1 4581 6354 -259 270 81 0 0 chr12 16809927 16809964 -126976491 + (TA)n Simple_repeat Simple_repeat 2 38 0 10629 197 51 29 chr12 16809964 16810230 -126976225 + L1MC1 LINE L1 6354 6613 0 3035 172 25 20 chr12 16810226 16810832 -126975623 + L1MC3 LINE L1 5734 6342 -1861 * 372 356 22 40 chr12 16810887 16811162 -126975293 + L2 LINE L2 2599 2868 -446 23 86 0 0 chr12 16811755 16811813 -126974642 + AT_rich Low_complexity Low_complexity 1 58 0 266 227 80 13 chr12 16812899 16812974 -126973481 + L2 LINE L2 3232 3311 -2 235 220 20 0 chr12 16812974 16813024 -126973431 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 275 338 107 28 chr12 16813161 16813478 -126972977 + L2 LINE L2 2633 2974 -340 217 159 136 0 chr12 16813584 16813628 -126972827 + L2 LINE L2 3264 3313 0 389 292 70 22 chr12 16815056 16815241 -126971214 + MIR SINE MIR 3 196 -66 267 326 95 0 chr12 16815804 16815899 -126970556 - L2 LINE L2 -2 3311 3208 2368 68 16 3 chr12 16816093 16816400 -126970055 + AluY SINE Alu 1 311 0 272 159 0 16 chr12 16816927 16816990 -126969465 + (TA)n Simple_repeat Simple_repeat 1 62 0 29 0 0 0 chr12 16817345 16817374 -126969081 + AT_rich Low_complexity Low_complexity 1 29 0 312 159 16 16 chr12 16818393 16818456 -126967999 + MLT1G LTR MaLR 516 578 -12 21 36 0 0 chr12 16818754 16818782 -126967673 + AT_rich Low_complexity Low_complexity 1 28 0 103 66 0 13 chr12 16819415 16819642 -126966813 + AT_rich Low_complexity Low_complexity 1 224 0 2276 84 13 7 chr12 16820014 16820322 -126966133 + AluSg SINE Alu 1 310 0 22 0 0 0 chr12 16821068 16821090 -126965365 + AT_rich Low_complexity Low_complexity 1 22 0 630 295 6 0 chr12 16821262 16821445 -126965010 + MIR SINE MIR 40 223 -39 645 248 73 24 chr12 16822693 16822899 -126963556 - L2 LINE L2 0 3313 3098 337 290 84 19 chr12 16823201 16823463 -126962992 - L1M4 LINE L1 -1447 4699 4421 25 31 0 0 chr12 16823510 16823542 -126962913 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 16823635 16823664 -126962791 + AT_rich Low_complexity Low_complexity 1 29 0 2185 145 57 5 chr12 16824187 16824594 -126961861 - MSTA LTR MaLR 0 428 1 360 103 0 0 chr12 16825387 16825445 -126961010 + (TG)n Simple_repeat Simple_repeat 1 58 0 316 321 164 0 chr12 16825724 16825864 -126960591 - MIR3 SINE MIR 0 208 46 243 0 0 0 chr12 16827469 16827496 -126958959 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 183 176 24 153 chr12 16827674 16827759 -126958696 + L2 LINE L2 2318 2391 -923 * 954 254 62 0 chr12 16827694 16827934 -126958521 + MIR SINE MIR 8 262 0 39 22 0 0 chr12 16827966 16828012 -126958443 + AT_rich Low_complexity Low_complexity 1 46 0 843 150 169 0 chr12 16828200 16828360 -126958095 - MER5A DNA MER1_type -2 187 1 342 300 120 51 chr12 16828381 16828757 -126957698 - L1ME LINE L1 -503 5659 5255 341 307 90 71 chr12 16828952 16829219 -126957236 - L1ME LINE L1 -1134 5012 4741 407 278 156 35 chr12 16829609 16829897 -126956558 - L1ME LINE L1 -2786 3360 3038 574 328 48 61 chr12 16830061 16830521 -126955934 - HAL1 LINE L1 -983 1524 1071 1936 126 37 3 chr12 16831135 16831429 -126955026 + AluSx SINE Alu 1 304 -8 535 217 77 0 chr12 16832058 16832201 -126954254 + MER103 DNA DNA 3 156 -10 2491 64 0 6 chr12 16832333 16832646 -126953809 + AluY SINE Alu 1 311 0 212 211 19 0 chr12 16835165 16835217 -126951238 + (TA)n Simple_repeat Simple_repeat 1 53 0 517 285 59 54 chr12 16835479 16835700 -126950755 - MIR SINE MIR -38 224 3 264 367 22 11 chr12 16835825 16835915 -126950540 - L2 LINE L2 -241 3031 2941 809 244 5 24 chr12 16836583 16836792 -126949663 + L1ME1 LINE L1 49 253 -6143 757 89 28 39 chr12 16836815 16836994 -126949461 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1849 158 0 0 chr12 16837020 16837298 -126949157 + AluSx SINE Alu 3 280 -32 180 0 0 0 chr12 16837307 16837327 -126949128 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2209 285 57 50 chr12 16837333 16838523 -126947932 + L1ME1 LINE L1 269 1472 -4924 2028 150 0 3 chr12 16838523 16838836 -126947619 + AluSx SINE Alu 1 312 0 2209 285 57 50 chr12 16838836 16839092 -126947363 + L1ME1 LINE L1 1472 1725 -4671 2106 267 66 13 chr12 16839098 16840262 -126946193 + L1ME1 LINE L1 1916 3113 -3102 4960 233 73 40 chr12 16840272 16840407 -126946048 + L1ME1 LINE L1 3696 3825 -2410 306 50 0 0 chr12 16840407 16840447 -126946008 + (CA)n Simple_repeat Simple_repeat 1 40 0 4960 233 73 40 chr12 16840447 16842735 -126943720 + L1ME1 LINE L1 3825 6224 -11 32 67 0 0 chr12 16842852 16842912 -126943543 + AT_rich Low_complexity Low_complexity 1 60 0 2174 104 0 13 chr12 16843183 16843490 -126942965 + AluSq SINE Alu 1 303 -10 321 318 23 8 chr12 16844373 16844502 -126941953 + MER103 DNA DNA 32 162 -4 281 151 38 0 chr12 16844678 16844731 -126941724 - Charlie5 DNA MER1_type -28 2584 2530 21 0 0 0 chr12 16844766 16844787 -126941668 + AT_rich Low_complexity Low_complexity 1 21 0 1332 151 0 13 chr12 16844800 16845032 -126941423 + L1PA16 LINE L1 5938 6166 0 1510 55 0 0 chr12 16845113 16845296 -126941159 + LTR17 LTR ERV1 1 183 -597 4481 32 0 4 chr12 16845296 16845823 -126940632 - L1PA5 LINE L1 -1610 4536 4010 7015 61 1 2 chr12 16845823 16847427 -126939028 + L1PA5 LINE L1 4550 6152 -2 4508 64 40 0 chr12 16847435 16848012 -126938443 + LTR17 LTR ERV1 181 780 0 920 164 32 25 chr12 16848026 16848213 -126938242 - MER33 DNA MER1_type -248 76 1 198 339 0 31 chr12 16848334 16848399 -126938056 - MIR SINE MIR -125 83 21 2289 88 0 13 chr12 16848528 16848835 -126937620 + AluY SINE Alu 1 303 -8 2026 152 45 20 chr12 16849550 16849905 -126936550 - THE1B LTR MaLR 0 364 1 400 291 18 9 chr12 16850476 16850586 -126935869 + MER5A DNA MER1_type 48 158 -31 262 277 227 21 chr12 16852009 16852150 -126934305 - MLT1K LTR MaLR 0 588 419 226 0 59 0 chr12 16852166 16852200 -126934255 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 331 293 19 19 chr12 16852293 16852399 -126934056 - MLT1K LTR MaLR -368 220 115 229 182 36 0 chr12 16852967 16853022 -126933433 + T-rich Low_complexity Low_complexity 5 61 0 1162 184 0 34 chr12 16853253 16853492 -126932963 + AluJb SINE Alu 75 305 -7 399 262 113 85 chr12 16853711 16853993 -126932462 + L1ME4a LINE L1 5631 5920 -201 242 269 11 32 chr12 16855014 16855107 -126931348 + CT-rich Low_complexity Low_complexity 4 94 0 2248 181 2 5 chr12 16855163 16855560 -126930895 + MER57A LTR ERV1 8 403 0 1454 198 160 7 chr12 16855749 16856174 -126930281 + LTR54B LTR ERV1 7 496 -2 977 211 112 74 chr12 16856304 16856627 -126929828 + MLT1D LTR MaLR 58 392 -113 458 336 47 32 chr12 16856902 16857155 -126929300 - MIR SINE MIR -1 261 5 800 189 0 0 chr12 16857361 16857483 -126928972 + FLAM_C SINE Alu 3 124 -19 23 0 0 0 chr12 16857484 16857507 -126928948 + AT_rich Low_complexity Low_complexity 1 23 0 1725 197 54 8 chr12 16858011 16858382 -126928073 + MLT1B LTR MaLR 1 388 -2 186 267 50 17 chr12 16858395 16858455 -126928000 - MER5B DNA MER1_type -52 126 65 32 43 0 0 chr12 16858550 16858596 -126927859 + AT_rich Low_complexity Low_complexity 1 46 0 349 280 51 8 chr12 16859418 16859536 -126926919 + MER94 DNA DNA 5 127 -7 245 298 24 24 chr12 16860754 16860838 -126925617 - MIR SINE MIR -78 130 47 824 240 22 0 chr12 16860958 16861141 -126925314 + MER5A DNA MER1_type 2 188 -1 2138 108 0 53 chr12 16861437 16861760 -126924695 - AluSx SINE Alu -6 306 1 1111 219 27 10 chr12 16862802 16863127 -126923328 - MLT1A1 LTR MaLR -2 363 1 1092 148 20 30 chr12 16863850 16863998 -126922457 + L1MA4 LINE L1 6057 6204 -96 1988 94 3 28 chr12 16863998 16864284 -126922171 - AluSp SINE Alu -12 301 23 1092 148 20 30 chr12 16864284 16864337 -126922118 + L1MA4 LINE L1 6204 6256 -44 32 0 0 0 chr12 16864352 16864384 -126922071 + AT_rich Low_complexity Low_complexity 1 32 0 239 231 93 56 chr12 16864576 16864684 -126921771 + L1ME LINE L1 839 950 -5120 9029 165 32 13 chr12 16864688 16866016 -126920439 - L1PBa LINE L1 -2598 4264 2963 4982 37 2 0 chr12 16866016 16866615 -126919840 - L1PA4 LINE L1 -1 6154 5555 9029 165 32 13 chr12 16866615 16868223 -126918232 - L1PBa LINE L1 -3899 2963 1107 652 165 0 47 chr12 16868223 16868350 -126918105 - AluSq/x SINE Alu -191 121 1 184 320 141 0 chr12 16868851 16868929 -126917526 - L2 LINE L2 -47 3225 3137 2238 161 84 0 chr12 16869488 16869905 -126916550 - LTR47A LTR ERVL 0 452 1 315 309 27 18 chr12 16870889 16870999 -126915456 - MIR3 SINE MIR -13 195 85 6803 70 11 0 chr12 16871027 16872423 -126914032 - L1PA7 LINE L1 0 6154 4753 1555 218 29 35 chr12 16873623 16873939 -126912516 + MLT1A2 LTR MaLR 1 316 -58 3840 113 6 2 chr12 16873939 16874462 -126911993 - MER1A DNA MER1_type 0 527 3 1555 218 29 35 chr12 16874462 16874521 -126911934 + MLT1A2 LTR MaLR 316 374 0 1569 186 100 0 chr12 16874852 16875163 -126911292 - MER7A DNA MER2_type -5 341 2 396 199 81 99 chr12 16876324 16876485 -126909970 - MER5A DNA MER1_type -11 178 21 284 301 55 27 chr12 16876711 16876857 -126909598 + L1ME2 LINE L1 107 256 -6140 13611 186 36 24 chr12 16876876 16881105 -126905350 + L1MA4A LINE L1 568 4747 -2258 749 43 0 0 chr12 16881105 16881196 -126905259 + L1PA5 LINE L1 6054 6145 -9 13611 186 36 24 chr12 16881196 16882326 -126904129 + L1MA4A LINE L1 4747 5863 -1142 228 35 0 0 chr12 16882326 16882355 -126904100 + (CAA)n Simple_repeat Simple_repeat 2 30 0 13611 186 36 24 chr12 16882355 16882418 -126904037 + L1MA4A LINE L1 5863 5924 -1081 2293 78 0 0 chr12 16882418 16882701 -126903754 + AluSc SINE Alu 3 285 -24 13611 186 36 24 chr12 16882701 16883629 -126902826 + L1MA4A LINE L1 5924 6999 -6 853 246 46 4 chr12 16883645 16883925 -126902530 + L1ME2 LINE L1 2286 2577 -3638 452 283 46 85 chr12 16884360 16884643 -126901812 + L1ME2 LINE L1 2615 2886 -3329 280 186 127 0 chr12 16884690 16884808 -126901647 + L1ME2 LINE L1 3177 3309 -2906 2738 245 69 9 chr12 16884829 16885765 -126900690 + L1ME2 LINE L1 5233 6223 -10 2318 96 3 0 chr12 16885965 16886268 -126900187 - AluSp SINE Alu -9 304 1 3927 151 12 29 chr12 16887918 16888321 -126898134 + LTR51 LTR ERV1 1 389 -282 553 91 0 0 chr12 16888321 16888398 -126898057 + MADE1 DNA Mariner 1 77 -3 3927 151 12 29 chr12 16888398 16888676 -126897779 + LTR51 LTR ERV1 389 670 -1 267 339 104 0 chr12 16888845 16888960 -126897495 - MIR SINE MIR -115 147 21 764 256 46 25 chr12 16890760 16890998 -126895457 - MIR SINE MIR -18 244 2 340 219 101 59 chr12 16892626 16892745 -126893710 - MIR SINE MIR -130 132 9 288 305 110 8 chr12 16892955 16893073 -126893382 + MIR SINE MIR 19 148 -114 519 295 54 6 chr12 16893298 16893464 -126892991 + MER5B DNA MER1_type 4 177 -1 404 216 49 0 chr12 16895583 16895685 -126890770 + HAL1 LINE L1 2003 2109 -398 288 214 107 38 chr12 16895761 16895892 -126890563 + HAL1 LINE L1 2241 2380 -127 441 153 22 44 chr12 16896674 16896811 -126889644 + GA-rich Low_complexity Low_complexity 3 136 0 425 271 49 74 chr12 16897657 16897941 -126888514 - L1MC5 LINE L1 -45 7916 7640 974 89 0 0 chr12 16897980 16898127 -126888328 - AluSc SINE Alu 0 304 158 1005 297 35 10 chr12 16898247 16898640 -126887815 - L1MC4 LINE L1 -895 6977 6500 1192 175 68 5 chr12 16898929 16899135 -126887320 - MLT2B2 LTR ERVL -296 219 1 435 308 100 16 chr12 16899205 16899455 -126887000 - L1M4 LINE L1 -1302 4844 4574 268 327 55 21 chr12 16899502 16899817 -126886638 + L1ME LINE L1 4733 5069 -1077 709 224 57 0 chr12 16899848 16900040 -126886415 - L1MA4 LINE L1 -11 6289 6087 274 296 56 19 chr12 16900034 16900250 -126886205 + L1ME LINE L1 5101 5324 -822 * 329 337 96 27 chr12 16900257 16900444 -126886011 + L1ME LINE L1 5604 5803 -367 627 226 9 91 chr12 16901471 16901504 -126884951 - L1MA4 LINE L1 -95 6205 6171 1608 135 92 8 chr12 16901504 16901787 -126884668 - AluSg SINE Alu 0 305 1 627 226 9 91 chr12 16901787 16901982 -126884473 - L1MA4 LINE L1 -129 6171 5995 2349 86 0 13 chr12 16902000 16902303 -126884152 + AluSp SINE Alu 3 301 -12 387 283 0 0 chr12 16902787 16902879 -126883576 + MER5A DNA MER1_type 13 104 -85 196 376 71 7 chr12 16903047 16903188 -126883267 - MIR SINE MIR -111 151 2 2772 272 52 30 chr12 16904076 16905152 -126881303 + L1PA15 LINE L1 2 1558 -5229 3230 161 20 75 chr12 16905152 16905883 -126880572 + LTR8 LTR ERV1 1 691 0 19320 86 20 11 chr12 16905883 16908180 -126878275 + HUERS-P1 LTR ERV1 1 2328 -3935 203 79 26 0 chr12 16908180 16908218 -126878237 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 19320 86 20 11 chr12 16908218 16908594 -126877861 + HUERS-P1 LTR ERV1 2328 2699 -3564 229 260 0 0 chr12 16908595 16908645 -126877810 + PABL_B LTR ERV1 1 50 -617 944 287 68 59 chr12 16908653 16909311 -126877144 + PABL_B LTR ERV1 4 667 0 24424 78 33 15 chr12 16909311 16912792 -126873663 + HUERS-P1 LTR ERV1 2697 6241 -22 3392 155 16 76 chr12 16912842 16913577 -126872878 + LTR8 LTR ERV1 1 691 0 16783 201 16 22 chr12 16913624 16918844 -126867611 + L1PA15 LINE L1 1624 6813 -3 4160 253 32 42 chr12 16919248 16920550 -126865905 + L1MD1 LINE L1 3737 5022 -1124 1641 189 25 0 chr12 16920550 16920835 -126865620 - AluJo SINE Alu -20 292 1 4160 253 32 42 chr12 16920835 16921067 -126865388 + L1MD1 LINE L1 5022 5255 -891 2410 219 93 14 chr12 16921055 16921691 -126864764 + L1MD1 LINE L1 5555 6240 -2 * 245 240 22 17 chr12 16921788 16921967 -126864488 + (TA)n Simple_repeat Simple_repeat 1 180 0 779 266 96 13 chr12 16922081 16922310 -126864145 + LTR16C LTR ERVL 239 486 -5 183 283 58 58 chr12 16922526 16922646 -126863809 + MIR SINE MIR 70 189 -73 1115 176 0 0 chr12 16923437 16923613 -126862842 - AluJb SINE Alu -5 307 132 319 224 289 46 chr12 16923623 16923775 -126862680 + MIR SINE MIR 73 261 -1 219 268 14 0 chr12 16923776 16923847 -126862608 + (TTA)n Simple_repeat Simple_repeat 2 73 0 5386 157 18 28 chr12 16924206 16924829 -126861626 - L1MC2 LINE L1 -10 6334 5723 1658 183 161 0 chr12 16924829 16925195 -126861260 - MSTA LTR MaLR 0 428 4 5386 157 18 28 chr12 16925195 16925602 -126860853 - L1MC2 LINE L1 -621 5723 5314 580 368 147 28 chr12 16925703 16926621 -126859834 - L2 LINE L2 -341 2973 1947 187 308 39 13 chr12 16926681 16926759 -126859696 + L2 LINE L2 3234 3313 0 1829 136 44 0 chr12 16927014 16927331 -126859124 - L1MB2 LINE L1 -2 6169 5839 194 283 167 42 chr12 16929029 16929149 -126857306 - MIR3 SINE MIR -42 166 32 802 136 136 73 chr12 16929465 16929671 -126856784 + MER20 DNA MER1_type 1 219 0 360 88 0 0 chr12 16930942 16930999 -126855456 + (TC)n Simple_repeat Simple_repeat 1 57 0 411 38 0 0 chr12 16930999 16931052 -126855403 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 282 184 0 chr12 16932671 16932774 -126853681 - MIR SINE MIR -74 188 67 1756 209 43 45 chr12 16933227 16933690 -126852765 + MLT1C LTR MaLR 6 467 0 240 311 22 74 chr12 16934435 16934570 -126851885 + MIR SINE MIR 16 143 -65 * 519 335 23 17 chr12 16934542 16934718 -126851737 + MIR SINE MIR 59 235 -27 290 376 32 32 chr12 16934743 16934868 -126851587 + L2 LINE L2 3133 3257 -15 350 264 208 0 chr12 16936126 16936251 -126850204 + MIR SINE MIR 112 262 0 23 54 0 0 chr12 16936263 16936300 -126850155 + AT_rich Low_complexity Low_complexity 1 37 0 3192 101 15 4 chr12 16936425 16936890 -126849565 - L1PA11 LINE L1 0 6174 5705 747 246 33 6 chr12 16937776 16937959 -126848496 - MER5A DNA MER1_type -1 188 1 295 283 72 36 chr12 16988327 16988465 -126797990 - L1ME3 LINE L1 -2 6160 6018 1322 197 122 3 chr12 16988487 16988782 -126797673 + MER7A DNA MER2_type 19 346 0 356 266 48 0 chr12 16988836 16988861 -126797594 - L1MA9 LINE L1 -17 6295 6271 1434 225 92 30 chr12 16988861 16989385 -126797070 - L1ME1 LINE L1 -43 6123 5568 12130 42 2 4 chr12 16989388 16993095 -126793360 - L1PA5 LINE L1 0 6154 2353 297 191 131 12 chr12 16993251 16993335 -126793120 - MER5C DNA MER1_type -202 122 29 485 267 61 6 chr12 16993807 16993972 -126792483 - MER112 DNA MER1_type -84 176 3 187 313 62 12 chr12 16993990 16994070 -126792385 + L2 LINE L2 3189 3272 0 21 57 0 0 chr12 16994128 16994163 -126792292 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 16995042 16995063 -126791392 + AT_rich Low_complexity Low_complexity 1 21 0 390 356 75 0 chr12 16995118 16995264 -126791191 + MER5B DNA MER1_type 17 173 -5 3034 240 60 20 chr12 16995790 16996825 -126789630 + MER69 DNA AcHobo 1451 2526 0 926 201 11 32 chr12 16996974 16997163 -126789292 - MER5A DNA MER1_type -2 187 3 332 307 73 20 chr12 16997176 16997326 -126789129 + L2 LINE L2 1519 1676 -1638 1921 272 152 36 chr12 16997335 16998579 -126787876 + L2 LINE L2 1917 3313 0 2823 10 0 0 chr12 16999325 16999634 -126786821 - AluYa5 SINE Alu -2 309 1 200 214 18 0 chr12 16999702 16999758 -126786697 + (CATA)n Simple_repeat Simple_repeat 4 60 0 369 241 9 18 chr12 16999843 16999955 -126786500 - MER102a DNA MER1_type -6 324 214 392 254 50 86 chr12 17000052 17000272 -126786183 - MER102a DNA MER1_type -117 213 2 212 213 0 82 chr12 17000287 17000348 -126786107 - L2 LINE L2 -695 2619 2564 948 259 41 4 chr12 17000898 17001141 -126785314 + MIR SINE MIR 8 259 -3 500 337 49 0 chr12 17001165 17001328 -126785127 + MIR SINE MIR 6 176 -86 672 163 62 31 chr12 17001570 17001699 -126784756 + FLAM_C SINE Alu 1 133 0 205 95 24 24 chr12 17001699 17001741 -126784714 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 256 227 62 86 chr12 17003439 17003567 -126782888 - MIR SINE MIR -108 154 30 285 75 0 0 chr12 17003736 17003776 -126782679 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 293 114 29 chr12 17006602 17006742 -126779713 + L2 LINE L2 3162 3313 0 2406 130 0 16 chr12 17007580 17007950 -126778505 - THE1B LTR MaLR 0 364 1 1193 269 102 26 chr12 17008171 17008858 -126777597 - L2 LINE L2 -5 3308 2575 2433 209 22 0 chr12 17008867 17008902 -126777553 - MLT2B2 LTR ERVL -15 500 467 450 0 0 0 chr12 17008902 17008952 -126777503 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2433 209 22 0 chr12 17008952 17009405 -126777050 - MLT2B2 LTR ERVL -48 467 1 296 273 206 26 chr12 17009405 17009599 -126776856 - L2 LINE L2 -736 2578 2350 348 322 63 14 chr12 17009717 17010083 -126776372 + L1MEc LINE L1 1763 2104 -4436 330 360 80 26 chr12 17010084 17010348 -126776107 + L1MEc LINE L1 2183 2460 -4261 591 78 0 0 chr12 17010480 17010570 -126775885 + L1PA15 LINE L1 6071 6160 -5 1214 185 60 47 chr12 17012299 17012618 -126773837 - MER33 DNA MER1_type -1 323 1 361 204 80 0 chr12 17012795 17012883 -126773572 - MIR SINE MIR -56 206 112 225 94 0 0 chr12 17013890 17013922 -126772533 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 17015353 17015390 -126771065 + (CA)n Simple_repeat Simple_repeat 2 38 0 342 0 0 0 chr12 17016323 17016361 -126770094 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 275 66 75 chr12 17016416 17016750 -126769705 + MLT1I LTR MaLR 79 409 0 215 286 160 42 chr12 17017809 17017928 -126768527 - L2 LINE L2 -5 3308 3176 6703 55 24 5 chr12 17018186 17019093 -126767362 + L1PA7 LINE L1 5228 6151 -3 27 49 0 0 chr12 17019815 17019856 -126766599 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 17020509 17020532 -126765923 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 244 390 96 14 chr12 17020688 17021313 -126765142 - L2 LINE L2 -147 3125 2451 865 308 28 4 chr12 17021498 17021751 -126764704 + MIR SINE MIR 4 262 0 383 221 53 11 chr12 17021758 17021853 -126764602 - MIR SINE MIR -57 205 107 310 256 0 45 chr12 17021994 17022127 -126764328 + G-rich Low_complexity Low_complexity 6 132 0 762 159 0 14 chr12 17022631 17022769 -126763686 - FLAM_C SINE Alu -2 141 6 831 301 51 58 chr12 17022967 17023362 -126763093 - L2 LINE L2 -1 3312 2921 691 233 89 41 chr12 17023911 17024203 -126762252 + MLT1J LTR MaLR 6 311 -200 2141 117 0 3 chr12 17024491 17024790 -126761665 - AluSc SINE Alu -11 298 1 225 277 68 68 chr12 17024836 17025320 -126761135 + L1MEc LINE L1 1838 2321 -4075 947 244 87 8 chr12 17025396 17025706 -126760749 + L1MEc LINE L1 2597 2942 -3273 1449 239 0 17 chr12 17025706 17026007 -126760448 - AluJo SINE Alu -16 296 1 947 244 87 8 chr12 17026007 17026065 -126760390 + L1MEc LINE L1 2942 2994 -3221 283 300 65 100 chr12 17026200 17026393 -126760062 + L2 LINE L2 3030 3213 -100 1752 127 0 12 chr12 17026393 17026645 -126759810 - AluSx SINE Alu 0 312 64 283 300 65 100 chr12 17026645 17026711 -126759744 + L2 LINE L2 3213 3280 -33 198 195 44 9 chr12 17026755 17026868 -126759587 + (TA)n Simple_repeat Simple_repeat 1 117 0 308 235 0 0 chr12 17026873 17026941 -126759514 - L1MC4 LINE L1 -1339 6703 6636 802 127 0 8 chr12 17026986 17027104 -126759351 + FLAM_C SINE Alu 5 121 -22 48 32 0 0 chr12 17027105 17027167 -126759288 + AT_rich Low_complexity Low_complexity 1 62 0 1810 157 20 10 chr12 17028065 17028358 -126758097 + AluJo SINE Alu 1 296 -16 1657 147 48 20 chr12 17028578 17028750 -126757705 - AluJo SINE Alu -11 301 116 180 0 0 0 chr12 17028750 17028770 -126757685 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1657 147 48 20 chr12 17028770 17028890 -126757565 - AluJo SINE Alu -196 116 1 23 0 0 0 chr12 17029243 17029266 -126757189 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 17030247 17030267 -126756188 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 362 349 33 13 chr12 17030556 17030708 -126755747 - MIR SINE MIR -95 167 13 585 298 56 60 chr12 17031837 17032272 -126754183 + L2 LINE L2 2761 3192 -121 183 42 0 0 chr12 17033219 17033243 -126753212 + (CA)n Simple_repeat Simple_repeat 1 24 0 2290 96 0 3 chr12 17034460 17034763 -126751692 + AluSg1 SINE Alu 1 302 -7 425 303 19 49 chr12 17035398 17035560 -126750895 + MIR3 SINE MIR 42 198 -10 338 232 119 81 chr12 17036376 17036561 -126749894 + Charlie8 DNA MER1_type 3 194 -2223 612 230 7 35 chr12 17036880 17037075 -126749380 - MLT1F LTR MaLR -11 531 370 457 279 35 23 chr12 17037212 17037384 -126749071 - MLT1F LTR MaLR -421 174 1 255 312 42 3 chr12 17037970 17038112 -126748343 - MIR3 SINE MIR -63 145 15 189 0 0 0 chr12 17038200 17038221 -126748234 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 541 295 120 13 chr12 17038946 17039180 -126747275 - MIR SINE MIR -2 260 2 401 0 20 0 chr12 17039901 17039950 -126746505 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr12 17040330 17040353 -126746102 + AT_rich Low_complexity Low_complexity 1 23 0 238 300 43 0 chr12 17042538 17042608 -126743847 + L2 LINE L2 3199 3271 -1 23 0 0 0 chr12 17042635 17042658 -126743797 + AT_rich Low_complexity Low_complexity 1 23 0 418 319 71 45 chr12 17042899 17043327 -126743128 + L1MEc LINE L1 36 733 -5663 947 285 83 46 chr12 17043366 17043736 -126742719 + L1MEc LINE L1 806 1161 -5235 306 0 0 0 chr12 17043736 17043770 -126742685 + (CA)n Simple_repeat Simple_repeat 1 34 0 947 285 83 46 chr12 17043770 17044100 -126742355 + L1MEc LINE L1 1161 1477 -4919 2258 71 0 10 chr12 17044100 17044396 -126742059 + AluY SINE Alu 1 293 -18 947 285 83 46 chr12 17044396 17044673 -126741782 + L1MEc LINE L1 1477 1820 -4576 435 321 8 0 chr12 17045239 17045373 -126741082 - MIR SINE MIR -25 237 103 279 354 102 16 chr12 17045551 17045718 -126740737 - MIR SINE MIR -62 146 6 22 35 0 0 chr12 17045762 17045791 -126740664 + AT_rich Low_complexity Low_complexity 1 29 0 640 221 0 8 chr12 17046420 17046542 -126739913 + FLAM_A SINE Alu 1 121 -12 780 116 75 7 chr12 17047540 17047686 -126738769 + THE1C LTR MaLR 200 355 -20 2606 48 0 0 chr12 17047905 17048216 -126738239 - AluY SINE Alu 0 311 1 782 130 0 30 chr12 17049899 17050030 -126736425 + FLAM_C SINE Alu 3 129 -4 250 329 162 45 chr12 17050050 17050494 -126735961 + L2 LINE L2 691 1186 -2128 798 164 14 14 chr12 17050598 17050744 -126735711 - THE1C LTR MaLR -229 146 1 21 36 0 0 chr12 17051386 17051414 -126735041 + AT_rich Low_complexity Low_complexity 1 28 0 513 247 27 70 chr12 17051600 17051786 -126734669 + MER5B DNA MER1_type 1 178 0 360 259 191 8 chr12 17051794 17051925 -126734530 - MER5A DNA MER1_type 0 189 35 702 198 70 0 chr12 17051927 17052084 -126734371 - MER105 DNA DNA -36 168 1 329 333 117 46 chr12 17052241 17052739 -126733716 + L2 LINE L2 1792 2324 -990 2046 114 0 7 chr12 17053488 17053787 -126732668 + L1P4 LINE L1 5394 5690 -471 6595 173 3 6 chr12 17053908 17055028 -126731427 - MSTA-int LTR MaLR -535 1116 1 2143 192 31 2 chr12 17055028 17055444 -126731011 - MSTA LTR MaLR 0 428 1 5470 171 46 2 chr12 17055445 17055580 -126730875 + L1PA4 LINE L1 4882 5010 -1145 2079 111 10 16 chr12 17055580 17055886 -126730569 + AluSq SINE Alu 1 304 -9 5470 171 46 2 chr12 17055886 17056998 -126729457 + L1PA4 LINE L1 5010 6155 0 25 31 0 0 chr12 17056998 17057030 -126729425 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 17057230 17057256 -126729199 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr12 17058051 17058075 -126728380 + AT_rich Low_complexity Low_complexity 1 24 0 2098 152 0 0 chr12 17058390 17058700 -126727755 - AluSx SINE Alu -2 310 1 304 376 32 0 chr12 17058941 17059066 -126727389 + MER5B DNA MER1_type 2 130 -48 2292 154 63 49 chr12 17059070 17059596 -126726859 - L1MB3 LINE L1 0 6183 5651 467 399 7 13 chr12 17059734 17060042 -126726413 + HERV16 LTR ERVL 1271 1576 -3420 18752 53 0 6 chr12 17060186 17062528 -126723927 - L1P LINE L1 -3816 2330 1 184 184 20 41 chr12 17062892 17062941 -126723514 - L2 LINE L2 0 3313 3266 16520 42 6 2 chr12 17063190 17065289 -126721166 + L1P LINE L1 2913 5020 -1126 31 0 0 0 chr12 17066452 17066483 -126719972 + AT_rich Low_complexity Low_complexity 1 31 0 188 184 0 0 chr12 17067468 17067506 -126718949 - L2 LINE L2 -14 3299 3262 6744 60 4 8 chr12 17068591 17069578 -126716877 - L1PA8 LINE L1 -4 6168 5167 26 0 0 0 chr12 17072201 17072227 -126714228 + AT_rich Low_complexity Low_complexity 1 26 0 868 190 145 5 chr12 17073303 17073503 -126712952 - MER34 LTR ERV1 0 542 315 373 256 73 80 chr12 17074347 17074484 -126711971 - L2 LINE L2 0 3272 3137 1145 266 41 4 chr12 17074746 17075231 -126711224 + L1M4 LINE L1 4077 4579 -1567 300 150 0 0 chr12 17075286 17075326 -126711129 + (T)n Simple_repeat Simple_repeat 1 40 0 340 318 101 11 chr12 17075441 17075620 -126710835 - L2 LINE L2 -723 2591 2397 218 263 38 25 chr12 17075630 17075710 -126710745 + MIR SINE MIR 170 250 -12 480 171 9 0 chr12 17078620 17078725 -126707730 - L1MA8 LINE L1 0 6291 6186 721 280 51 16 chr12 17079696 17079953 -126706502 + MLT1F1 LTR MaLR 2 267 -300 1095 135 48 70 chr12 17080352 17080582 -126705873 + AluJo SINE Alu 87 311 -1 28 48 0 0 chr12 17080615 17080657 -126705798 + AT_rich Low_complexity Low_complexity 1 42 0 7293 41 19 11 chr12 17080798 17081807 -126704648 - L1PA5 LINE L1 -5 6149 5139 37 23 0 0 chr12 17081932 17081976 -126704479 + AT_rich Low_complexity Low_complexity 1 44 0 337 275 64 7 chr12 17082003 17082747 -126703708 + L1ME LINE L1 3026 3986 -2160 720 241 25 46 chr12 17082749 17083031 -126703424 + L1ME LINE L1 5255 5530 -634 25 0 0 0 chr12 17083152 17083177 -126703278 + AT_rich Low_complexity Low_complexity 1 25 0 1232 146 15 0 chr12 17083201 17083406 -126703049 - MER2 DNA MER2_type -136 209 2 497 178 9 9 chr12 17083406 17083507 -126702948 + MER53 DNA DNA 88 188 -1 295 269 28 99 chr12 17083516 17083657 -126702798 + MIR SINE MIR 102 232 -30 1526 203 12 34 chr12 17084773 17085063 -126701392 + MST-int LTR MaLR 1327 1611 -40 4007 138 13 5 chr12 17085063 17085693 -126700762 - MER41B LTR ERV1 0 635 1 1526 203 12 34 chr12 17085693 17085728 -126700727 + MST-int LTR MaLR 1611 1645 -6 369 276 63 8 chr12 17087050 17087177 -126699278 + MIR SINE MIR 84 217 -45 451 307 63 29 chr12 17087927 17088132 -126698323 + LTR33 LTR ERVL 305 516 -5 908 292 101 32 chr12 17088627 17089035 -126697420 + MLT1J2 LTR MaLR 1 436 -14 420 292 46 60 chr12 17089053 17089334 -126697121 - MLT1K LTR MaLR -3 585 309 683 253 150 55 chr12 17090120 17090614 -126695841 - MLT1G LTR MaLR -2 588 48 642 96 10 0 chr12 17090836 17090940 -126695515 + HSMAR2 DNA Mariner 1197 1301 -1 207 0 0 0 chr12 17091044 17091067 -126695388 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 258 296 25 0 chr12 17092078 17092159 -126694296 - MIR3 SINE MIR -13 195 113 244 301 151 0 chr12 17092558 17092651 -126693804 - L2 LINE L2 0 3313 3207 248 226 66 38 chr12 17092719 17092825 -126693630 - L1M4 LINE L1 -937 5209 5101 490 204 9 0 chr12 17092838 17092946 -126693509 + L1M LINE L1 5315 5423 -741 405 274 9 19 chr12 17093054 17093269 -126693186 + L1MEc LINE L1 2172 2384 -4012 336 205 116 54 chr12 17094314 17094426 -126692029 + MIR SINE MIR 144 262 0 451 267 121 56 chr12 17094554 17094786 -126691669 - LTR16C LTR ERVL -244 247 1 305 272 59 88 chr12 17094859 17094995 -126691460 + L2 LINE L2 3178 3309 -4 213 94 0 0 chr12 17097183 17097215 -126689240 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 309 37 98 chr12 17097979 17098355 -126688100 - L2 LINE L2 -76 3237 2885 229 323 21 10 chr12 17098732 17098828 -126687627 - L2 LINE L2 -496 2818 2722 310 259 19 19 chr12 17099185 17099293 -126687162 + MLT1J2-int LTR MaLR 5 112 -1623 * 467 318 42 8 chr12 17099285 17099521 -126686934 + MLT1J2-int LTR MaLR 285 528 -843 1702 293 59 20 chr12 17099696 17100601 -126685854 - L1M4 LINE L1 -2105 4041 3102 2102 282 68 40 chr12 17100737 17102040 -126684415 - L1MEc LINE L1 -5020 1376 37 521 321 176 28 chr12 17102056 17102524 -126683931 + L2 LINE L2 2772 3313 0 1461 197 154 6 chr12 17102551 17102896 -126683559 + MSTD LTR MaLR 1 396 0 4175 226 39 48 chr12 17102898 17104014 -126682441 + MSTD-int LTR MaLR 2 1108 -627 798 292 54 21 chr12 17104183 17104515 -126681940 + HERV16 LTR ERVL 2200 2542 -2454 2137 121 3 3 chr12 17104520 17104818 -126681637 - AluSx SINE Alu -11 301 4 4210 47 0 4 chr12 17104838 17105367 -126681088 - L1PA4 LINE L1 0 6155 5629 4688 211 62 43 chr12 17106122 17106292 -126680163 - L1M4 LINE L1 -506 5678 5513 2542 119 6 3 chr12 17106292 17106653 -126679802 + THE1B LTR MaLR 3 364 0 4688 211 62 43 chr12 17106653 17107204 -126679251 - L1M4 LINE L1 -671 5513 4974 2240 114 0 7 chr12 17107204 17107503 -126678952 + AluSc SINE Alu 1 297 -12 4688 211 62 43 chr12 17107503 17107993 -126678462 - L1M4 LINE L1 -1210 4974 4494 1853 156 57 79 chr12 17107993 17108435 -126678020 - MSTB1 LTR MaLR 0 432 1 4688 211 62 43 chr12 17108435 17109064 -126677391 - L1M4 LINE L1 -1690 4494 3807 25 0 0 0 chr12 17109792 17109817 -126676638 + AT_rich Low_complexity Low_complexity 1 25 0 242 238 111 0 chr12 17109984 17110047 -126676408 - HAL1 LINE L1 -866 1641 1572 469 368 21 51 chr12 17110213 17110642 -126675813 - LTR16C LTR ERVL -4 487 72 21 0 0 0 chr12 17110986 17111007 -126675448 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17111048 17111072 -126675383 + AT_rich Low_complexity Low_complexity 1 24 0 366 299 175 16 chr12 17111193 17111387 -126675068 - L1MEd LINE L1 -5208 911 687 468 86 0 0 chr12 17111421 17111491 -126674964 + (GA)n Simple_repeat Simple_repeat 1 70 0 338 363 87 45 chr12 17111495 17111850 -126674605 - L1MEd LINE L1 -5479 640 271 1031 57 0 0 chr12 17111927 17112049 -126674406 - AluSq/x SINE Alu -180 133 12 249 98 0 0 chr12 17112121 17112162 -126674293 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 311 0 0 chr12 17117164 17117225 -126669230 - MIR SINE MIR -155 107 47 903 287 94 38 chr12 17118124 17118625 -126667830 + MLT1H LTR MaLR 21 549 0 280 348 37 34 chr12 17118753 17118949 -126667506 + MLT1H-int LTR MaLR 309 508 -863 2201 114 56 14 chr12 17118949 17119307 -126667148 - THE1C LTR MaLR 0 375 3 280 348 37 34 chr12 17119307 17119406 -126667049 + MLT1H-int LTR MaLR 508 605 -766 745 199 131 38 chr12 17120351 17120804 -126665651 + MLT1H LTR MaLR 1 548 -1 584 256 68 11 chr12 17121394 17121585 -126664870 - MER46C DNA MER2_type 0 338 137 382 276 141 56 chr12 17122402 17122552 -126663903 + L2 LINE L2 2943 3079 -193 195 42 0 0 chr12 17122552 17122576 -126663879 + (CA)n Simple_repeat Simple_repeat 1 24 0 382 276 141 56 chr12 17122576 17122729 -126663726 + L2 LINE L2 3079 3272 0 300 154 22 22 chr12 17123852 17123943 -126662512 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 220 236 18 0 chr12 17123965 17124020 -126662435 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 237 280 64 13 chr12 17124881 17125038 -126661417 - L1ME4a LINE L1 -11 6110 5946 21 57 0 0 chr12 17125038 17125073 -126661382 + AT_rich Low_complexity Low_complexity 1 35 0 727 118 0 0 chr12 17125783 17125893 -126660562 - AluY SINE Alu -201 110 1 254 302 54 40 chr12 17126658 17126807 -126659648 + L2 LINE L2 2670 2820 -494 672 259 81 10 chr12 17127642 17127839 -126658616 + MIR SINE MIR 8 218 -44 6287 139 13 4 chr12 17128003 17129007 -126657448 + HSMAR2 DNA Mariner 166 1178 -124 1473 253 78 45 chr12 17129114 17129967 -126656488 - L1MEc LINE L1 -3418 2797 1930 537 16 0 0 chr12 17129967 17130029 -126656426 + (TG)n Simple_repeat Simple_repeat 1 62 0 1473 253 78 45 chr12 17130029 17130398 -126656057 - L1MEc LINE L1 -4285 1930 1575 190 221 130 26 chr12 17131002 17131079 -126655376 + MIR3 SINE MIR 117 201 -7 254 277 76 8 chr12 17131581 17131700 -126654755 - LTR33A LTR ERVL -24 499 373 241 179 75 60 chr12 17131965 17132032 -126654423 - LTR33A LTR ERVL -401 122 55 2459 76 0 13 chr12 17132523 17132837 -126653618 + AluY SINE Alu 1 310 -1 22 70 0 0 chr12 17132879 17132922 -126653533 + AT_rich Low_complexity Low_complexity 1 43 0 543 305 18 24 chr12 17133989 17134153 -126652302 + MIR SINE MIR 12 174 -88 720 241 80 16 chr12 17134156 17134405 -126652050 + Charlie4a DNA MER1_type 244 508 0 259 319 82 7 chr12 17134411 17134546 -126651909 + MLT1J LTR MaLR 326 470 -41 336 289 67 62 chr12 17134588 17134955 -126651500 - HAL1b LINE L1 -780 1550 1186 2113 140 42 22 chr12 17134955 17135312 -126651143 + THE1B LTR MaLR 1 364 0 336 289 67 62 chr12 17135312 17135417 -126651038 - HAL1b LINE L1 -1144 1186 89 983 283 56 24 chr12 17135620 17136211 -126650244 + L1MCa LINE L1 961 1570 -4856 2519 14 4 0 chr12 17136321 17136637 -126649818 - AluY SINE Alu 0 317 1 1563 116 9 17 chr12 17136639 17136871 -126649584 - AluSp SINE Alu -15 298 69 2264 238 67 7 chr12 17137107 17137686 -126648769 + MSTD-int LTR MaLR 1116 1729 -6 1417 211 69 61 chr12 17137691 17138084 -126648371 + MSTD LTR MaLR 1 396 0 690 236 40 25 chr12 17138092 17138291 -126648164 - L1ME2 LINE L1 -106 6058 5857 227 102 0 0 chr12 17138952 17139001 -126647454 - LTR66 LTR ERVL -167 443 395 318 50 0 0 chr12 17139002 17139042 -126647413 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 139 23 23 chr12 17139043 17139086 -126647369 + (TA)n Simple_repeat Simple_repeat 2 44 0 419 289 113 50 chr12 17139235 17139616 -126646839 + MLT1E LTR MaLR 42 494 -101 911 283 140 28 chr12 17139760 17140273 -126646182 - L1ME2 LINE L1 -975 5171 4554 252 0 0 0 chr12 17140273 17140301 -126646154 + (CA)n Simple_repeat Simple_repeat 1 28 0 911 283 140 28 chr12 17140301 17140501 -126645954 - L1ME2 LINE L1 -1592 4554 4378 21 71 0 0 chr12 17140621 17140663 -126645792 + AT_rich Low_complexity Low_complexity 1 42 0 228 288 0 17 chr12 17140685 17140744 -126645711 - L1ME2 LINE L1 -2037 4109 4052 287 313 129 18 chr12 17141565 17141728 -126644727 - MIR SINE MIR -8 254 74 269 252 154 16 chr12 17242522 17242645 -126543810 - MIR SINE MIR -6 256 117 440 294 19 47 chr12 17242878 17242935 -126543520 - L2 LINE L2 0 3313 3256 777 213 34 34 chr12 17242935 17243142 -126543313 + MER3 DNA MER1_type 3 209 0 440 294 19 47 chr12 17243142 17243239 -126543216 - L2 LINE L2 -57 3256 3164 1720 107 0 0 chr12 17243239 17243463 -126542992 + AluSq SINE Alu 1 224 -89 440 294 19 47 chr12 17243463 17243518 -126542937 - L2 LINE L2 -149 3164 3109 1856 159 3 7 chr12 17243906 17244208 -126542247 + AluSg SINE Alu 1 301 -9 815 266 86 4 chr12 17245227 17245460 -126540995 - MIR SINE MIR -10 252 1 2327 110 0 0 chr12 17246900 17247209 -126539246 + AluSc SINE Alu 1 309 0 249 370 82 65 chr12 17247270 17247624 -126538831 - L2 LINE L2 -73 3199 2840 828 155 101 5 chr12 17247762 17247969 -126538486 + L1MC3 LINE L1 7553 7779 -6 230 280 0 32 chr12 17248865 17248958 -126537497 + L1ME4a LINE L1 5967 6056 -65 208 171 24 0 chr12 17250739 17250780 -126535675 + (CGAG)n Simple_repeat Simple_repeat 1 42 0 215 380 102 0 chr12 17251744 17251852 -126534603 - L3 LINE CR1 -15 1562 1444 253 256 163 23 chr12 17251880 17252009 -126534446 - MIR SINE MIR -4 258 112 2139 122 0 3 chr12 17253486 17253781 -126532674 + AluSx SINE Alu 3 296 -16 380 336 30 8 chr12 17253960 17254094 -126532361 - L2 LINE L2 -3 3310 3174 2553 68 0 0 chr12 17254575 17254886 -126531569 + AluY SINE Alu 1 311 0 249 284 0 0 chr12 17255129 17255203 -126531252 + (TAA)n Simple_repeat Simple_repeat 3 76 0 1151 239 20 0 chr12 17256083 17256330 -126530125 - MIR SINE MIR 0 262 11 22 0 0 0 chr12 17256404 17256426 -126530029 + AT_rich Low_complexity Low_complexity 1 22 0 231 264 64 9 chr12 17256567 17256677 -126529778 + L1MC5 LINE L1 7014 7129 -832 400 319 57 7 chr12 17257296 17257437 -126529018 + L2 LINE L2 3117 3264 -8 618 318 59 13 chr12 17257675 17257914 -126528541 - MIR SINE MIR 0 262 13 2234 222 30 8 chr12 17257933 17258388 -126528067 + MLT2B2 LTR ERVL 1 470 -45 233 56 0 28 chr12 17258388 17258424 -126528031 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 2234 222 30 8 chr12 17258424 17258472 -126527983 + MLT2B2 LTR ERVL 470 515 0 2130 97 4 0 chr12 17258889 17259167 -126527288 + AluSg SINE Alu 1 279 -31 355 19 19 19 chr12 17259172 17259225 -126527230 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 389 280 74 51 chr12 17259302 17259477 -126526978 + MIR SINE MIR 23 201 -61 716 288 88 0 chr12 17259713 17259918 -126526537 + MER45C DNA AcHobo 1 223 -730 430 281 110 0 chr12 17259955 17260101 -126526354 + MER45C DNA AcHobo 421 582 -371 2438 79 0 0 chr12 17260576 17260879 -126525576 - AluSg SINE Alu -7 303 1 216 298 0 0 chr12 17261641 17261688 -126524767 + L2 LINE L2 3214 3260 -12 731 133 7 84 chr12 17262985 17263128 -126523327 - FLAM_C SINE Alu 0 133 2 2022 142 39 31 chr12 17263530 17263889 -126522566 - THE1B LTR MaLR -2 362 1 368 277 46 0 chr12 17264350 17264480 -126521975 - L1M4 LINE L1 -3298 2848 2713 415 302 89 34 chr12 17264772 17265007 -126521448 - MIR SINE MIR -2 260 13 2143 123 3 0 chr12 17265929 17266221 -126520234 - AluSx SINE Alu -19 293 1 225 303 142 19 chr12 17266999 17267161 -126519294 - MIR SINE MIR 0 262 81 1189 146 75 66 chr12 17267725 17268087 -126518368 - THE1C LTR MaLR 0 375 11 2155 130 12 18 chr12 17268913 17269252 -126517203 - MER1B DNA MER1_type 0 337 1 1542 178 58 4 chr12 17270032 17270185 -126516270 - AluJo SINE Alu -22 290 147 450 0 0 0 chr12 17270185 17270235 -126516220 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1542 178 58 4 chr12 17270235 17270356 -126516099 - AluJo SINE Alu -165 147 1 23 0 0 0 chr12 17270990 17271013 -126515442 + AT_rich Low_complexity Low_complexity 1 23 0 542 278 81 6 chr12 17271580 17271753 -126514702 + MIR SINE MIR 40 225 -37 1244 105 12 0 chr12 17272537 17272709 -126513746 - AluSq SINE Alu -14 299 126 1294 188 35 60 chr12 17272709 17273023 -126513432 - AluJb SINE Alu -6 306 1 425 220 6 143 chr12 17273049 17273115 -126513340 - MLT1B LTR MaLR -3 592 561 4302 119 5 1 chr12 17273115 17273763 -126512692 + L1PA13 LINE L1 5496 6145 -18 425 220 6 143 chr12 17273763 17273864 -126512591 - MLT1B LTR MaLR -34 561 448 632 250 23 17 chr12 17273911 17274101 -126512354 - MLT1B LTR MaLR -11 379 174 731 291 25 18 chr12 17274145 17274402 -126512053 - MLT1G1 LTR MaLR -285 310 7 1823 41 9 5 chr12 17274699 17274920 -126511535 - AluY SINE Alu -89 222 1 262 243 95 27 chr12 17276795 17276869 -126509586 + L2 LINE L2 3188 3266 -6 * 434 236 62 67 chr12 17276864 17277059 -126509396 - MIR SINE MIR -3 259 66 2895 168 21 25 chr12 17278733 17279157 -126507298 + L1M3f LINE L1 1292 1715 -4850 2381 82 0 35 chr12 17279157 17279473 -126506982 + AluY SINE Alu 1 305 -6 2895 168 21 25 chr12 17279473 17279615 -126506840 + L1M3f LINE L1 1715 1856 -4709 483 175 0 0 chr12 17279603 17279727 -126506728 + L1M3f LINE L1 2401 2500 -4065 * 2159 211 39 16 chr12 17279748 17280307 -126506148 + L1M3f LINE L1 3826 4397 -3168 574 238 0 0 chr12 17280412 17280555 -126505900 - L1 LINE L1 -3286 2860 2718 28 0 0 0 chr12 17281056 17281084 -126505371 + AT_rich Low_complexity Low_complexity 1 28 0 597 275 62 56 chr12 17281120 17281494 -126504961 - L1MC4 LINE L1 -42 8000 7625 635 161 153 0 chr12 17281519 17281656 -126504799 - MER3 DNA MER1_type -2 207 50 396 210 57 0 chr12 17281681 17281805 -126504650 - L1MC4 LINE L1 -431 7611 7481 770 249 231 48 chr12 17281805 17282303 -126504152 + MLT1G1 LTR MaLR 1 589 -6 329 284 82 18 chr12 17282309 17282445 -126504010 - L1MC4a LINE L1 -421 7387 7313 2288 113 0 3 chr12 17282445 17282755 -126503700 - AluSc SINE Alu 0 309 1 329 284 82 18 chr12 17282755 17282801 -126503654 - L1MC4a LINE L1 -495 7313 7271 191 284 63 21 chr12 17283350 17283445 -126503010 + L2 LINE L2 2843 2941 -372 2359 94 0 0 chr12 17283525 17283823 -126502632 - AluY SINE Alu -13 298 1 21 0 0 0 chr12 17283830 17283851 -126502604 + AT_rich Low_complexity Low_complexity 1 21 0 1817 147 0 29 chr12 17284432 17284745 -126501710 - AluJb SINE Alu -8 304 1 3394 136 2 19 chr12 17284870 17285406 -126501049 - MER1A DNA MER1_type 0 527 1 238 160 320 0 chr12 17285427 17285502 -126500953 + MIR SINE MIR 32 130 -78 345 125 0 0 chr12 17285518 17285574 -126500881 + (CA)n Simple_repeat Simple_repeat 2 57 0 2338 125 97 5 chr12 17287470 17287862 -126498593 + MSTA LTR MaLR 1 428 0 305 283 43 65 chr12 17288038 17288176 -126498279 - L2 LINE L2 0 3272 3138 1420 120 19 5 chr12 17288194 17288403 -126498052 + AluSq SINE Alu 1 212 -101 26 30 0 0 chr12 17288608 17288641 -126497814 + AT_rich Low_complexity Low_complexity 1 33 0 1885 124 44 0 chr12 17288644 17288918 -126497537 - AluSx SINE Alu -26 286 1 1976 173 18 12 chr12 17289358 17289693 -126496762 - MER1B DNA MER1_type 0 337 1 2348 96 0 0 chr12 17289825 17290126 -126496329 + AluSc SINE Alu 1 301 -8 1421 223 63 18 chr12 17291158 17291557 -126494898 - LTR40c LTR ERVL -6 459 43 458 230 239 10 chr12 17292732 17292941 -126493514 + MER46C DNA MER2_type 81 337 -1 2042 131 0 0 chr12 17293006 17293468 -126492987 + AluSx SINE Alu 1 462 0 2221 118 0 3 chr12 17294777 17295117 -126491338 - AluSp SINE Alu 0 313 1 963 174 6 0 chr12 17295117 17295278 -126491177 - FRAM SINE Alu -13 163 2 817 264 32 0 chr12 17295300 17295511 -126490944 - MIR SINE MIR -34 228 13 245 306 121 12 chr12 17295546 17295719 -126490736 - L2 LINE L2 -1430 1884 1693 235 263 118 0 chr12 17295770 17295846 -126490609 + MIR3 SINE MIR 123 207 -1 1993 122 4 0 chr12 17297522 17297829 -126488626 + AluSx SINE Alu 2 309 0 1990 117 10 3 chr12 17297938 17298228 -126488227 + AluSx SINE Alu 1 292 -20 199 268 113 10 chr12 17298389 17298486 -126487969 + MIR SINE MIR 156 262 0 224 248 28 138 chr12 17298624 17298769 -126487686 + L2 LINE L2 3180 3308 -5 12284 45 3 2 chr12 17298889 17300503 -126485952 - L1P LINE L1 -851 5295 3680 5631 46 1 1 chr12 17300502 17301221 -126485234 + L1PA5 LINE L1 5416 6134 -20 * 231 370 60 20 chr12 17303325 17303525 -126482930 + L2 LINE L2 1998 2205 -1109 374 294 32 32 chr12 17303865 17303934 -126482521 + L1ME4a LINE L1 5477 5545 -576 1387 206 74 31 chr12 17303934 17304284 -126482171 + MLT1A1 LTR MaLR 1 365 0 374 294 32 32 chr12 17304284 17304435 -126482020 + L1ME4a LINE L1 5544 5697 -424 1316 70 150 0 chr12 17304569 17304769 -126481686 - MER30 DNA MER1_type 0 230 1 276 245 129 20 chr12 17304893 17305040 -126481415 + L1ME4a LINE L1 5954 6116 -5 34 0 0 0 chr12 17305040 17305074 -126481381 + AT_rich Low_complexity Low_complexity 1 34 0 890 169 20 10 chr12 17306589 17306602 -126479853 + L1 LINE L1 3249 3260 -2886 2258 100 3 3 chr12 17306602 17306911 -126479544 + AluSc SINE Alu 1 309 0 890 169 20 10 chr12 17306911 17307098 -126479357 + L1 LINE L1 3260 3451 -2695 3529 102 7 19 chr12 17307468 17308010 -126478445 - MER41B LTR ERV1 -99 536 1 847 268 191 14 chr12 17308010 17308454 -126478001 + L2 LINE L2 2757 3301 -12 266 347 61 0 chr12 17310469 17310567 -126475888 + L2 LINE L2 3204 3307 -6 21 36 0 0 chr12 17310819 17310847 -126475608 + AT_rich Low_complexity Low_complexity 1 28 0 306 194 45 0 chr12 17311652 17311719 -126474736 - L1MCa LINE L1 -4361 2065 1996 347 338 171 0 chr12 17312489 17312705 -126473750 + MIR SINE MIR 2 254 -8 652 221 16 0 chr12 17312803 17312925 -126473530 - FLAM_A SINE Alu -9 124 1 272 305 57 9 chr12 17313078 17313183 -126473272 + L2 LINE L2 2708 2817 -497 22 35 0 0 chr12 17315042 17315071 -126471384 + AT_rich Low_complexity Low_complexity 1 29 0 306 293 25 64 chr12 17315660 17315817 -126470638 + L1MEc LINE L1 1569 1719 -5002 434 292 116 20 chr12 17315862 17316259 -126470196 + L1MEc LINE L1 1666 2100 -4440 23 0 0 0 chr12 17316276 17316299 -126470156 + AT_rich Low_complexity Low_complexity 1 23 0 326 292 200 0 chr12 17316481 17316611 -126469844 - MIR SINE MIR -103 159 4 228 193 104 30 chr12 17316725 17316860 -126469595 + L1MEc LINE L1 2476 2620 -4101 316 195 161 0 chr12 17317233 17317320 -126469135 + MIR SINE MIR 73 173 -89 695 219 112 0 chr12 17317513 17317682 -126468773 - MER58C DNA MER1_type 0 215 28 1777 158 65 3 chr12 17317816 17318138 -126468317 - L1M4 LINE L1 -463 5715 5374 30 0 0 0 chr12 17318163 17318193 -126468262 + AT_rich Low_complexity Low_complexity 1 30 0 1600 184 18 0 chr12 17318582 17318865 -126467590 + AluJb SINE Alu 1 288 -24 181 282 0 70 chr12 17319230 17319301 -126467154 + MIR SINE MIR 160 225 -37 258 244 59 104 chr12 17319749 17319884 -126466571 + MIR SINE MIR 84 212 -50 2473 52 0 52 chr12 17319980 17320308 -126466147 - AluY SINE Alu 0 311 1 1638 170 67 3 chr12 17320580 17320863 -126465592 + AluJb SINE Alu 1 301 -11 239 284 134 31 chr12 17321801 17321928 -126464527 + MIR SINE MIR 106 245 -17 390 310 124 16 chr12 17323264 17323506 -126462949 - L3 LINE CR1 -1125 452 185 1790 158 3 0 chr12 17323608 17323893 -126462562 + AluSx SINE Alu 1 286 -26 350 316 32 13 chr12 17325342 17325500 -126460955 + L1MEd LINE L1 602 762 -5357 22 35 0 0 chr12 17325554 17325583 -126460872 + AT_rich Low_complexity Low_complexity 1 29 0 503 333 40 61 chr12 17325742 17326171 -126460284 - LTR16B LTR ERVL -2 462 43 236 390 20 55 chr12 17326401 17326804 -126459651 + L2 LINE L2 2460 2848 -466 197 263 30 121 chr12 17328321 17328372 -126458083 - MIR3 SINE MIR -4 204 165 352 258 104 39 chr12 17328372 17328554 -126457901 + MER117 DNA MER1_type 1 194 -3 197 263 30 121 chr12 17328554 17328601 -126457854 - MIR3 SINE MIR -43 165 115 2071 102 44 3 chr12 17328712 17329006 -126457449 + AluSc SINE Alu 1 306 -3 422 287 23 16 chr12 17329157 17329286 -126457169 + MIR SINE MIR 43 172 -90 1008 279 59 43 chr12 17329552 17329757 -126456698 + L2 LINE L2 2887 3102 -211 228 86 0 0 chr12 17329757 17329792 -126456663 + (CA)n Simple_repeat Simple_repeat 1 35 0 1008 279 59 43 chr12 17329792 17329959 -126456496 + L2 LINE L2 3102 3265 -48 229 306 76 14 chr12 17329967 17330111 -126456344 - L2 LINE L2 -234 3038 2886 186 191 0 0 chr12 17330164 17330206 -126456249 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2303 90 27 0 chr12 17330236 17330537 -126455918 + AluSg SINE Alu 1 309 -1 4679 88 54 35 chr12 17332751 17333528 -126452927 + L1MA2 LINE L1 5513 6304 0 652 191 0 37 chr12 17334131 17334267 -126452188 + AluJb SINE Alu 159 289 -23 324 304 0 0 chr12 17335324 17335472 -126450983 + A-rich Low_complexity Low_complexity 1 148 0 414 69 0 0 chr12 17335652 17335710 -126450745 + (CA)n Simple_repeat Simple_repeat 2 59 0 303 307 58 58 chr12 17335866 17336003 -126450452 + L2 LINE L2 3136 3272 0 314 309 15 52 chr12 17336089 17336225 -126450230 - L2 LINE L2 -5 3267 3137 319 328 75 8 chr12 17336530 17336664 -126449791 + MIR3 SINE MIR 3 145 -63 1350 156 47 11 chr12 17337353 17337629 -126448826 - AluSp SINE Alu -26 287 2 5643 195 63 23 chr12 17338629 17340001 -126446454 + L1MC3 LINE L1 5640 7067 -718 284 357 38 0 chr12 17340275 17340460 -126445995 - L1ME3A LINE L1 -219 5951 5760 23 0 0 0 chr12 17340471 17340494 -126445961 + AT_rich Low_complexity Low_complexity 1 23 0 2012 132 3 10 chr12 17340531 17340841 -126445614 - AluSg SINE Alu -1 309 2 27 92 0 0 chr12 17340863 17340939 -126445516 + AT_rich Low_complexity Low_complexity 1 76 0 1216 239 42 15 chr12 17340990 17341321 -126445134 + MER58B DNA MER1_type 1 340 -1 213 151 27 14 chr12 17341432 17341505 -126444950 + (TA)n Simple_repeat Simple_repeat 2 75 0 1878 138 14 7 chr12 17342465 17342756 -126443699 + AluJb SINE Alu 5 297 -15 649 236 95 11 chr12 17343006 17343249 -126443206 + L2 LINE L2 2433 2758 -556 22 0 0 0 chr12 17343924 17343946 -126442509 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 17344823 17344844 -126441611 + AT_rich Low_complexity Low_complexity 1 21 0 874 95 0 0 chr12 17344890 17345006 -126441449 - FRAM SINE Alu -5 171 56 1419 182 16 4 chr12 17345015 17345262 -126441193 + AluJb SINE Alu 51 300 -12 1310 211 115 36 chr12 17346630 17346961 -126439494 - MLT1E3 LTR MaLR -7 617 261 182 326 116 23 chr12 17347096 17347182 -126439273 - L2 LINE L2 -52 3220 3127 237 230 40 40 chr12 17347915 17347989 -126438466 + L3b LINE CR1 1393 1466 -117 262 248 29 86 chr12 17348257 17348362 -126438093 - MIR SINE MIR -46 216 118 728 264 106 38 chr12 17348550 17348776 -126437679 + LTR50 LTR ERVL 15 224 -571 210 37 0 0 chr12 17348776 17348803 -126437652 + (TTG)n Simple_repeat Simple_repeat 2 28 0 728 264 106 38 chr12 17348803 17349223 -126437232 + LTR50 LTR ERVL 224 786 -9 259 305 133 9 chr12 17349720 17349825 -126436630 + L2 LINE L2 3155 3272 0 207 0 0 0 chr12 17350060 17350083 -126436372 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 385 97 149 0 chr12 17350619 17350733 -126435722 - AluYa5 SINE Alu -134 167 37 228 247 45 45 chr12 17352997 17353086 -126433369 + L1 LINE L1 4752 4840 -1306 21 57 0 0 chr12 17353165 17353200 -126433255 + AT_rich Low_complexity Low_complexity 1 35 0 1970 165 0 3 chr12 17354169 17354466 -126431989 + AluJo SINE Alu 1 296 -16 1162 187 11 68 chr12 17355079 17355357 -126431098 - AluJb SINE Alu -6 306 45 243 192 72 112 chr12 17355535 17355612 -126430843 - L1ME4a LINE L1 -43 6078 6006 1962 92 70 4 chr12 17355612 17355883 -126430572 - AluSc SINE Alu -20 289 1 243 192 72 112 chr12 17355883 17355930 -126430525 - L1ME4a LINE L1 -115 6006 5959 532 349 35 6 chr12 17357168 17357340 -126429115 + MER91A DNA MER1_type 19 195 -1 1900 190 67 30 chr12 17357668 17358235 -126428220 + L1MD2 LINE L1 5670 6224 -18 1444 210 4 11 chr12 17359045 17359326 -126427129 + AluJo SINE Alu 1 279 -33 833 208 51 0 chr12 17359509 17359725 -126426730 - L1MD3 LINE L1 -21 7974 7748 37 39 0 0 chr12 17360766 17360817 -126425638 + AT_rich Low_complexity Low_complexity 1 51 0 605 284 8 30 chr12 17361228 17361464 -126424991 + LTR16B LTR ERVL 234 464 0 1557 259 56 26 chr12 17361466 17362268 -126424187 - L1ME LINE L1 -5168 902 77 2304 106 0 0 chr12 17362533 17362835 -126423620 + AluSx SINE Alu 9 310 -2 867 304 199 18 chr12 17362913 17363589 -126422866 + L2 LINE L2 2254 3039 -233 240 185 80 80 chr12 17363629 17363673 -126422782 + L1ME LINE L1 5314 5357 -813 1524 158 124 75 chr12 17363673 17364142 -126422313 - LTR22B LTR ERVK 0 492 1 240 185 80 80 chr12 17364142 17364259 -126422196 + L1ME LINE L1 5356 5475 -695 561 206 0 0 chr12 17364550 17364652 -126421803 + FLAM_A SINE Alu 31 132 -10 1466 236 67 76 chr12 17364770 17365295 -126421160 - L1MC4 LINE L1 -3 8039 7511 2130 142 3 7 chr12 17365295 17365604 -126420851 + AluJb SINE Alu 1 308 -4 1466 236 67 76 chr12 17365604 17365761 -126420694 - L1MC4 LINE L1 -531 7511 7362 1726 234 19 28 chr12 17365761 17366227 -126420228 - LTR40b LTR ERVL 0 462 1 1466 236 67 76 chr12 17366227 17366279 -126420176 - L1MC4 LINE L1 -680 7362 7311 22 0 0 0 chr12 17366616 17366638 -126419817 + AT_rich Low_complexity Low_complexity 1 22 0 619 276 62 60 chr12 17366767 17367191 -126419264 + LTR35 LTR ERV1 133 547 -9 2438 202 38 35 chr12 17367568 17367727 -126418728 + L1MC/D LINE L1 4697 4854 -1505 2281 85 0 19 chr12 17367727 17368034 -126418421 - AluY SINE Alu -10 301 1 2438 202 38 35 chr12 17368034 17368762 -126417693 + L1MC/D LINE L1 4854 5589 -770 1615 132 85 34 chr12 17368762 17369057 -126417398 + AluSq SINE Alu 1 310 -3 2438 202 38 35 chr12 17369057 17369246 -126417209 + L1MC/D LINE L1 5589 5776 -583 887 173 48 43 chr12 17369263 17369378 -126417077 - L1M3 LINE L1 -671 5500 5387 1721 148 59 7 chr12 17369378 17369668 -126416787 - AluJo SINE Alu -7 305 1 887 173 48 43 chr12 17369668 17369980 -126416475 - L1M3 LINE L1 -784 5387 5095 596 221 7 7 chr12 17369982 17370131 -126416324 - L1M3 LINE L1 -1205 4941 4793 4052 213 24 32 chr12 17370135 17370868 -126415587 - L1M3 LINE L1 -2105 4041 3303 2444 77 0 10 chr12 17370868 17371179 -126415276 - AluY SINE Alu -3 308 1 4052 213 24 32 chr12 17371179 17371621 -126414834 - L1M3 LINE L1 -2843 3303 2875 2241 110 0 0 chr12 17371621 17371913 -126414542 + AluSg SINE Alu 1 292 -18 4052 213 24 32 chr12 17371913 17371996 -126414459 - L1M3 LINE L1 -3271 2875 2793 705 204 40 62 chr12 17372002 17372246 -126414209 - MLT1E1 LTR MaLR -355 238 5 628 285 99 7 chr12 17372533 17372817 -126413638 - L1ME3A LINE L1 -296 5874 5565 1158 209 0 5 chr12 17372818 17373029 -126413426 + AluJb SINE Alu 87 296 -16 259 312 91 0 chr12 17373053 17373207 -126413248 - L1P5 LINE L1 -635 5521 5354 612 318 86 3 chr12 17373214 17373538 -126412917 - L1ME3A LINE L1 -865 5281 4931 2324 97 3 0 chr12 17373610 17373908 -126412547 - AluSx SINE Alu -13 299 1 314 367 42 5 chr12 17373923 17374138 -126412317 - L1ME3A LINE L1 -1322 4824 4602 1295 260 56 14 chr12 17374180 17374695 -126411760 + L1PB1 LINE L1 15 551 -6312 3887 126 102 82 chr12 17374775 17376119 -126410336 + pTR5 LTR ERV1 741 2438 0 6267 160 32 4 chr12 17376121 17377822 -126408633 + L1PB1 LINE L1 663 2587 -4276 680 187 0 0 chr12 17377821 17377955 -126408500 + L1PB1 LINE L1 4567 4700 -2162 * 5745 106 18 7 chr12 17377962 17378997 -126407458 + L1PB1 LINE L1 5820 6865 -2 339 245 20 66 chr12 17379032 17379086 -126407369 - L1ME3A LINE L1 -1529 4617 4562 1729 161 87 22 chr12 17379086 17379452 -126407003 - MLT1B LTR MaLR 0 390 1 339 245 20 66 chr12 17379452 17379548 -126406907 - L1ME3A LINE L1 -1584 4562 4474 522 283 29 0 chr12 17379620 17379758 -126406697 + LTR33 LTR ERVL 30 171 -350 379 231 0 10 chr12 17379948 17380052 -126406403 + LTR33 LTR ERVL 404 506 -15 254 147 84 11 chr12 17380068 17380163 -126406292 - L1ME3A LINE L1 -1722 4424 4323 207 0 0 0 chr12 17380179 17380202 -126406253 + (CAA)n Simple_repeat Simple_repeat 2 24 0 304 197 15 0 chr12 17380214 17380280 -126406175 + FAM SINE Alu 113 179 0 1681 175 3 29 chr12 17380320 17380634 -126405821 - AluJo SINE Alu -6 306 1 457 276 132 4 chr12 17380721 17380971 -126405484 - L1ME3A LINE L1 -2014 4132 3851 235 333 72 18 chr12 17381225 17381336 -126405119 - L2 LINE L2 0 3272 3156 297 217 152 11 chr12 17381576 17381668 -126404787 - L2 LINE L2 -17 3296 3192 29 28 0 0 chr12 17381795 17381831 -126404624 + AT_rich Low_complexity Low_complexity 1 36 0 941 149 6 12 chr12 17382133 17382294 -126404161 - AluJb SINE Alu -14 298 139 203 114 57 0 chr12 17382791 17382826 -126403629 + CT-rich Low_complexity Low_complexity 3 39 0 202 281 78 0 chr12 17383553 17383617 -126402838 - MIR SINE MIR -111 151 83 209 294 73 15 chr12 17384221 17384289 -126402166 - MER5A DNA MER1_type -85 104 33 200 59 29 0 chr12 17384416 17384450 -126402005 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 274 233 81 23 chr12 17384745 17384831 -126401624 - MER5B DNA MER1_type -1 177 87 40 67 0 0 chr12 17384838 17384913 -126401542 + AT_rich Low_complexity Low_complexity 1 75 0 420 246 105 9 chr12 17384914 17385028 -126401427 - FLAM_A SINE Alu -7 126 2 191 159 0 45 chr12 17385030 17385074 -126401381 - MER5B DNA MER1_type -77 101 60 2351 104 0 0 chr12 17385511 17385819 -126400636 - AluSx SINE Alu -4 308 1 370 251 299 24 chr12 17386034 17386201 -126400254 + MIR SINE MIR 13 225 -37 1452 180 33 0 chr12 17386527 17386771 -126399684 - AluJb SINE Alu -15 297 46 293 306 14 0 chr12 17386852 17386924 -126399531 + L2 LINE L2 3190 3262 -10 559 178 75 0 chr12 17388065 17388172 -126398283 + FLAM_A SINE Alu 12 126 -16 189 383 101 28 chr12 17388486 17388703 -126397752 - L2 LINE L2 -228 3044 2812 25 0 0 0 chr12 17389204 17389229 -126397226 + AT_rich Low_complexity Low_complexity 1 25 0 203 171 0 0 chr12 17389535 17389570 -126396885 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr12 17389817 17389844 -126396611 + AT_rich Low_complexity Low_complexity 1 27 0 2471 82 0 16 chr12 17391108 17391423 -126395032 + AluSq SINE Alu 1 310 -3 392 282 46 72 chr12 17391739 17391991 -126394464 - L1ME4a LINE L1 -266 5855 5611 2167 88 27 10 chr12 17391991 17392287 -126394168 + AluSq SINE Alu 1 301 -12 392 282 46 72 chr12 17392287 17392339 -126394116 - L1ME4a LINE L1 -510 5611 5559 26 0 0 0 chr12 17392720 17392746 -126393709 + AT_rich Low_complexity Low_complexity 1 26 0 301 188 62 0 chr12 17393328 17393392 -126393063 - MIR SINE MIR -106 156 89 200 224 49 21 chr12 17393699 17393842 -126392613 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 261 196 27 65 chr12 17393859 17394043 -126392412 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 1961 137 10 0 chr12 17394508 17394801 -126391654 + AluSx SINE Alu 1 296 -16 1291 181 8 13 chr12 17394937 17395174 -126391281 + MER46A DNA MER2_type 1 236 0 1533 169 68 20 chr12 17395925 17396220 -126390235 + AluJb SINE Alu 1 309 -3 2073 130 0 35 chr12 17396271 17396587 -126389868 + AluSx SINE Alu 1 305 -7 290 304 0 51 chr12 17397049 17397187 -126389268 - L1ME LINE L1 -448 5673 5543 24 0 0 0 chr12 17397773 17397797 -126388658 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 17399083 17399106 -126387349 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 17400476 17400500 -126385955 + AT_rich Low_complexity Low_complexity 1 24 0 2192 89 31 0 chr12 17400580 17400871 -126385584 + AluSg SINE Alu 1 300 -10 247 331 92 0 chr12 17401632 17401762 -126384693 - L2 LINE L2 -213 3059 2918 254 319 91 61 chr12 17401867 17401984 -126384471 - L2 LINE L2 -491 2823 2711 1725 114 0 0 chr12 17401984 17402211 -126384244 + AluSg/x SINE Alu 76 302 -10 254 319 91 61 chr12 17402211 17402311 -126384144 - L2 LINE L2 -603 2711 2615 2208 100 10 0 chr12 17402311 17402602 -126383853 - AluSg SINE Alu -16 294 1 254 319 91 61 chr12 17402602 17402725 -126383730 - L2 LINE L2 -699 2615 2472 207 0 0 0 chr12 17403216 17403239 -126383216 + (T)n Simple_repeat Simple_repeat 1 23 0 394 234 160 62 chr12 17404057 17404301 -126382154 - HAL1b LINE L1 -2 1346 1079 2437 179 42 38 chr12 17404870 17405373 -126381082 - MLT1D LTR MaLR 0 505 1 692 308 224 28 chr12 17405423 17405537 -126380918 + L2 LINE L2 1923 2013 -1300 2417 81 0 3 chr12 17405537 17405833 -126380622 - AluSc SINE Alu -13 296 2 692 308 224 28 chr12 17405833 17406640 -126379815 + L2 LINE L2 2013 3017 -296 314 289 66 16 chr12 17407922 17408043 -126378412 - MIR SINE MIR -45 217 91 284 276 95 0 chr12 17408845 17408950 -126377505 - L2 LINE L2 0 3313 3199 372 325 65 6 chr12 17409257 17409426 -126377029 - MER5A DNA MER1_type -2 187 9 1802 194 149 8 chr12 17409845 17410349 -126376106 - MER90 LTR ERV1 0 575 1 284 321 161 12 chr12 17410538 17410706 -126375749 - MIR SINE MIR -12 250 58 573 247 118 11 chr12 17411048 17411226 -126375229 - MIR3 SINE MIR -3 205 9 3392 16 0 6 chr12 17412347 17412712 -126373743 - SVA Other Other 0 1386 1024 612 252 57 10 chr12 17412803 17412996 -126373459 + MIR SINE MIR 43 246 -16 233 227 0 0 chr12 17413861 17413927 -126372528 - L1ME4a LINE L1 -4 6117 6052 411 231 0 0 chr12 17414130 17414208 -126372247 + MER5A DNA MER1_type 112 189 0 460 227 31 70 chr12 17414322 17414429 -126372026 + L2 LINE L2 3191 3294 -19 2017 144 6 28 chr12 17414429 17414748 -126371707 + AluSx SINE Alu 1 312 0 460 227 31 70 chr12 17414748 17414768 -126371687 + L2 LINE L2 3294 3313 0 186 229 82 0 chr12 17414981 17415042 -126371413 + MIR3 SINE MIR 131 196 -12 1558 111 0 9 chr12 17415108 17415325 -126371130 - AluSg/x SINE Alu -14 296 82 217 277 119 30 chr12 17415349 17415450 -126371005 - L2 LINE L2 -3 3310 3201 231 36 0 0 chr12 17415772 17415800 -126370655 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 704 194 0 0 chr12 17415801 17415925 -126370530 - AluSq/x SINE Alu -189 124 1 260 221 29 29 chr12 17415989 17416057 -126370398 - L2 LINE L2 -21 3292 3225 * 645 262 69 35 chr12 17416055 17416257 -126370198 - MIR SINE MIR -20 242 34 2408 98 0 0 chr12 17416773 17417080 -126369375 - AluSx SINE Alu -4 308 2 605 198 9 9 chr12 17417125 17417241 -126369214 - FLAM_A SINE Alu -26 116 1 489 356 16 11 chr12 17417808 17417999 -126368456 - MIR SINE MIR -51 211 20 394 146 11 56 chr12 17418009 17418098 -126368357 - Charlie3 DNA MER1_type -8 2702 2618 1143 238 99 3 chr12 17418098 17418430 -126368025 - L1MC4 LINE L1 -1153 6889 6526 27 49 0 0 chr12 17418875 17418916 -126367539 + AT_rich Low_complexity Low_complexity 1 41 0 244 227 61 129 chr12 17418922 17419054 -126367401 - L2 LINE L2 -9 3263 3141 21 36 0 0 chr12 17419580 17419608 -126366847 + AT_rich Low_complexity Low_complexity 1 28 0 291 28 0 0 chr12 17420291 17420301 -126366154 + (TG)n Simple_repeat Simple_repeat 1 46 0 291 28 0 0 chr12 17420301 17420337 -126366118 + (TG)n Simple_repeat Simple_repeat 1 36 0 425 303 84 0 chr12 17420580 17420722 -126365733 - MIR3 SINE MIR -11 197 44 274 200 0 33 chr12 17420796 17420856 -126365599 - MER5A DNA MER1_type -16 173 116 2126 86 3 31 chr12 17420883 17421175 -126365280 + AluSc SINE Alu 1 284 -25 204 322 0 35 chr12 17421177 17421264 -126365191 - MER5B DNA MER1_type -70 108 25 2068 119 7 14 chr12 17421970 17422256 -126364199 + AluSq SINE Alu 1 284 -29 27 0 0 0 chr12 17422257 17422284 -126364171 + AT_rich Low_complexity Low_complexity 1 27 0 208 342 61 26 chr12 17422391 17422505 -126363950 - L2 LINE L2 -2 3311 3194 952 138 7 0 chr12 17423179 17423331 -126363124 + L1MC1 LINE L1 6166 6318 -15 2824 10 0 0 chr12 17423341 17423652 -126362803 - AluYa5 SINE Alu 0 311 1 1137 224 126 0 chr12 17424476 17424731 -126361724 + AluJo SINE Alu 1 287 -25 480 258 93 27 chr12 17424832 17425038 -126361417 + MIR SINE MIR 37 262 0 2281 87 23 7 chr12 17426153 17426453 -126360002 - AluSx SINE Alu -7 305 1 739 199 0 0 chr12 17426525 17426656 -126359799 - FLAM_A SINE Alu -2 131 1 2591 35 0 3 chr12 17426785 17427096 -126359359 + AluY SINE Alu 1 310 -1 622 232 67 0 chr12 17427179 17427343 -126359112 + MER105 DNA DNA 30 204 0 315 302 122 0 chr12 17427510 17427649 -126358806 - MIR SINE MIR 0 262 107 244 310 30 50 chr12 17427954 17428054 -126358401 - MIR SINE MIR -149 113 16 1383 154 53 0 chr12 17428339 17428605 -126357850 - L1MA7 LINE L1 -5 6286 6007 321 265 43 9 chr12 17430265 17430450 -126356005 + MIR SINE MIR 20 247 -15 1835 144 58 120 chr12 17431949 17432434 -126354021 + MSTB2 LTR MaLR 1 455 -2 1744 166 39 7 chr12 17432699 17432983 -126353472 + AluJb SINE Alu 1 293 -19 3319 145 46 6 chr12 17433026 17433652 -126352803 - L1MA8 LINE L1 -136 6155 5505 302 240 0 21 chr12 17433657 17433753 -126352702 - HAL1 LINE L1 -1244 1263 1170 212 369 107 7 chr12 17433996 17434145 -126352310 + L2 LINE L2 2891 3054 -218 193 200 29 0 chr12 17434161 17434196 -126352259 - MIR SINE MIR -132 76 41 2318 80 7 10 chr12 17434635 17434936 -126351519 + AluY SINE Alu 1 300 -11 2137 139 0 0 chr12 17435535 17435830 -126350625 + AluJb SINE Alu 1 295 -17 2335 229 43 4 chr12 17436058 17436570 -126349885 - MLT1F LTR MaLR -7 535 4 433 300 53 79 chr12 17436638 17437055 -126349400 - L1MC4 LINE L1 -16 8026 7621 347 299 37 13 chr12 17437099 17437171 -126349284 - L1MC5 LINE L1 -525 7495 7426 912 114 0 0 chr12 17437171 17437311 -126349144 + (TCCTG)n Simple_repeat Simple_repeat 4 143 0 1532 193 65 4 chr12 17437311 17437586 -126348869 - AluJo SINE Alu -20 292 1 347 299 37 13 chr12 17437586 17437944 -126348511 - L1MC5 LINE L1 -593 7427 7167 240 313 35 61 chr12 17438211 17438326 -126348129 - L2 LINE L2 -2 3270 3159 27 29 0 0 chr12 17438602 17438636 -126347819 + AT_rich Low_complexity Low_complexity 1 34 0 1321 188 58 26 chr12 17438875 17439252 -126347203 + MER114 LTR ERV 1 389 -259 345 189 87 87 chr12 17439252 17439379 -126347076 + MLT1H1 LTR MaLR 1 127 -415 439 232 85 31 chr12 17439508 17439739 -126346716 + MLT1H1 LTR MaLR 290 537 -12 468 242 90 22 chr12 17439754 17439977 -126346478 + MER114 LTR ERV 411 648 0 2128 114 0 7 chr12 17440660 17440981 -126345474 - AluSc SINE Alu 0 309 1 198 71 0 0 chr12 17441206 17441234 -126345221 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5632 134 19 6 chr12 17441710 17442945 -126343510 - L1PB2 LINE L1 0 6151 4899 228 224 0 17 chr12 17443232 17443290 -126343165 + MER94 DNA DNA 78 134 0 357 275 50 17 chr12 17443694 17443814 -126342641 + L2 LINE L2 2640 2763 -551 341 266 53 35 chr12 17443857 17444026 -126342429 + MER112 DNA MER1_type 7 178 -82 315 0 0 0 chr12 17444036 17444071 -126342384 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 39433 60 7 1 chr12 17444071 17450168 -126336287 - L1PA5 LINE L1 -12 6142 11 262 300 22 0 chr12 17450178 17450268 -126336187 + MER112 DNA MER1_type 160 251 -9 527 314 174 23 chr12 17450273 17450401 -126336054 + L2 LINE L2 2804 2911 -402 4284 74 4 2 chr12 17450401 17450954 -126335501 - MER41A LTR ERV1 0 554 1 527 314 174 23 chr12 17450954 17451268 -126335187 + L2 LINE L2 2911 3313 0 465 317 34 10 chr12 17451351 17451559 -126334896 - MER115 DNA AcHobo -440 253 41 387 283 92 72 chr12 17451936 17452227 -126334228 - L1ME4a LINE L1 -4 6117 5802 2322 103 3 0 chr12 17452227 17452529 -126333926 - AluSg SINE Alu -7 303 1 387 283 92 72 chr12 17452529 17452692 -126333763 - L1ME4a LINE L1 -319 5802 5644 1232 178 43 10 chr12 17452806 17453110 -126333345 - MER33 DNA MER1_type -9 315 2 675 169 64 87 chr12 17453274 17453446 -126333009 - MER20 DNA MER1_type 0 219 52 187 378 88 42 chr12 17453755 17453972 -126332483 + L3b LINE CR1 1298 1524 -59 187 352 84 14 chr12 17454018 17454160 -126332295 + L3b LINE CR1 1185 1336 -247 504 295 80 40 chr12 17454720 17455022 -126331433 - L2 LINE L2 -155 3117 2804 2131 113 10 0 chr12 17455348 17455641 -126330814 + AluSx SINE Alu 1 296 -16 283 128 0 0 chr12 17457014 17457061 -126329394 - MADE1 DNA Mariner -1 79 33 367 338 83 6 chr12 17459194 17459351 -126327104 - MIR3 SINE MIR -6 202 34 320 254 91 9 chr12 17460516 17460626 -126325829 - L1MC4 LINE L1 -1336 6706 6588 2320 107 3 0 chr12 17460686 17460994 -126325461 + AluSx SINE Alu 1 309 -3 302 304 107 64 chr12 17461068 17461480 -126324975 - L2 LINE L2 -216 3056 2629 600 179 81 8 chr12 17461723 17461846 -126324609 + FLAM_C SINE Alu 1 132 -11 2158 132 0 7 chr12 17462071 17462374 -126324081 - AluSx SINE Alu -11 301 1 189 250 0 0 chr12 17463072 17463132 -126323323 + CT-rich Low_complexity Low_complexity 3 62 0 611 223 141 92 chr12 17464320 17464647 -126321808 - MLT1J LTR MaLR -76 435 93 1537 68 14 27 chr12 17465626 17465847 -126320608 - L1PA10 LINE L1 -11 6157 5940 331 321 130 36 chr12 17465971 17466410 -126320045 + L2 LINE L2 1288 1767 -1547 374 182 0 0 chr12 17466412 17466488 -126319967 + AluSx SINE Alu 1 57 -245 1645 151 0 0 chr12 17466572 17466811 -126319644 + AluSx SINE Alu 61 299 -13 303 344 77 18 chr12 17466863 17467084 -126319371 + L2 LINE L2 1896 2129 -1185 1487 124 0 113 chr12 17467398 17467681 -126318774 + AluJb SINE Alu 1 251 -61 216 0 0 0 chr12 17467751 17467775 -126318680 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr12 17467815 17467844 -126318611 + AT_rich Low_complexity Low_complexity 1 29 0 483 310 121 6 chr12 17468897 17469071 -126317384 + MIR SINE MIR 13 206 -56 321 333 47 29 chr12 17469209 17469380 -126317075 + MIR3 SINE MIR 34 207 -1 24 0 0 0 chr12 17470857 17470881 -126315574 + AT_rich Low_complexity Low_complexity 1 24 0 2424 94 0 3 chr12 17471839 17472148 -126314307 - AluSq SINE Alu -5 308 1 636 246 47 19 chr12 17473898 17474154 -126312301 + L1ME4a LINE L1 5669 5931 -190 4511 184 67 92 chr12 17474254 17475370 -126311085 - L1MC4 LINE L1 -1 8041 6977 4698 109 4 24 chr12 17475370 17476074 -126310381 - LTR8 LTR ERV1 0 691 2 4511 184 67 92 chr12 17476074 17476579 -126309876 - L1MC4 LINE L1 -1065 6977 6461 276 264 88 11 chr12 17477133 17477224 -126309231 - MIR SINE MIR -74 134 37 206 388 12 0 chr12 17477700 17477780 -126308675 + MIR SINE MIR 43 123 -85 2263 111 0 16 chr12 17477781 17478088 -126308367 - AluSq SINE Alu -11 302 1 269 269 194 32 chr12 17478765 17478951 -126307504 - MIR SINE MIR -17 245 30 650 321 57 24 chr12 17479176 17479422 -126307033 - MIR SINE MIR -6 256 3 551 295 133 21 chr12 17480462 17480696 -126305759 - MIR SINE MIR -2 260 1 2372 87 0 0 chr12 17481397 17481706 -126304749 + AluY SINE Alu 1 309 -2 632 354 91 20 chr12 17483242 17483854 -126302601 + L2 LINE L2 2397 3054 -218 264 316 20 31 chr12 17484900 17484998 -126301457 - MIR SINE MIR -153 109 13 258 286 45 13 chr12 17485303 17485321 -126301134 - L1MA10 LINE L1 0 6334 6317 599 208 56 81 chr12 17485321 17485605 -126300850 - L1ME2 LINE L1 -9 6155 5879 2076 244 78 46 chr12 17485676 17487561 -126298894 - L1MEc LINE L1 -2758 3457 1632 2369 114 0 0 chr12 17487561 17487867 -126298588 - AluSx SINE Alu -6 306 1 2076 244 78 46 chr12 17487867 17488056 -126298399 - L1MEc LINE L1 -4583 1632 1450 7412 171 151 39 chr12 17488056 17489634 -126296821 - MER52A LTR ERV1 0 1755 1 2076 244 78 46 chr12 17489634 17489880 -126296575 - L1MEc LINE L1 -4765 1450 880 180 77 0 0 chr12 17490751 17490777 -126295678 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6181 95 13 0 chr12 17490780 17491765 -126294690 - L1PA13 LINE L1 -1 6162 5175 422 275 28 0 chr12 17491986 17492095 -126294360 - MIR SINE MIR -1 261 150 27 29 0 0 chr12 17493625 17493659 -126292796 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr12 17493811 17493837 -126292618 + AT_rich Low_complexity Low_complexity 1 26 0 185 333 0 0 chr12 17494471 17494516 -126291939 + L2 LINE L2 3218 3262 -10 2487 51 0 0 chr12 17494791 17495083 -126291372 - AluY SINE Alu -19 292 1 415 269 83 2 chr12 17495267 17495415 -126291040 - MIR SINE MIR -67 141 4 355 357 63 40 chr12 17496038 17496338 -126290117 + L3 LINE CR1 1129 1435 -142 315 0 0 0 chr12 17496488 17496523 -126289932 + (TG)n Simple_repeat Simple_repeat 2 36 0 1529 215 66 18 chr12 17496592 17497029 -126289426 - MLT1C LTR MaLR 0 467 10 303 252 0 137 chr12 17498299 17498407 -126288048 - MIR SINE MIR -56 152 63 353 251 11 99 chr12 17498407 17498598 -126287857 - MER5B DNA MER1_type -4 174 1 303 252 0 137 chr12 17498598 17498620 -126287835 - MIR SINE MIR -145 63 40 2072 107 4 0 chr12 17498642 17498947 -126287508 - AluSx SINE Alu 0 306 1 228 302 0 0 chr12 17499557 17499610 -126286845 - L2 LINE L2 -14 3299 3247 186 43 0 0 chr12 17500095 17500118 -126286337 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 640 49 0 0 chr12 17501495 17501576 -126284879 + L1PA8A LINE L1 6018 6098 -33 2019 40 4 0 chr12 17502314 17502561 -126283894 - L1PA4 LINE L1 0 6155 5908 28 0 0 0 chr12 17502794 17502822 -126283633 + AT_rich Low_complexity Low_complexity 1 28 0 667 183 120 26 chr12 17502822 17503013 -126283442 - L1MA9 LINE L1 -35 6277 6069 2070 185 21 16 chr12 17503329 17503761 -126282694 - MLT1C LTR MaLR -33 434 1 25 31 0 0 chr12 17505076 17505108 -126281347 + AT_rich Low_complexity Low_complexity 1 32 0 1681 164 0 29 chr12 17505491 17505772 -126280683 + AluJo SINE Alu 1 273 -39 184 313 169 66 chr12 17506947 17507113 -126279342 + L2 LINE L2 3075 3257 -15 266 236 0 0 chr12 17507326 17507381 -126279074 + MIR SINE MIR 197 251 -11 2079 151 0 0 chr12 17507502 17507814 -126278641 - AluSx SINE Alu 0 312 1 272 0 79 0 chr12 17508163 17508201 -126278254 + T-rich Low_complexity Low_complexity 5 45 0 1914 138 0 7 chr12 17508201 17508483 -126277972 - AluSx SINE Alu -32 280 1 250 171 0 0 chr12 17509068 17509109 -126277346 - MLT1L LTR MaLR -221 394 354 303 296 164 6 chr12 17509280 17509439 -126277016 + MIR SINE MIR 9 192 -70 1228 132 66 31 chr12 17511630 17511858 -126274597 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr12 17512410 17512493 -126273962 + L2 LINE L2 3186 3269 -3 709 194 157 8 chr12 17513109 17513357 -126273098 - MER33 DNA MER1_type -32 292 8 2179 141 21 24 chr12 17513591 17513967 -126272488 + THE1C LTR MaLR 1 375 0 11028 97 12 28 chr12 17513967 17515572 -126270883 + THE1C-int LTR MaLR 1 1580 0 2101 136 24 27 chr12 17515572 17515948 -126270507 + THE1C LTR MaLR 1 375 0 314 146 10 126 chr12 17516269 17516372 -126270083 - L1MB7 LINE L1 -19 6165 6075 2168 128 26 0 chr12 17516848 17517152 -126269303 + AluJb SINE Alu 1 312 0 41 36 0 0 chr12 17519105 17519160 -126267295 + AT_rich Low_complexity Low_complexity 1 55 0 2117 146 38 8 chr12 17520131 17520502 -126265953 + MSTB LTR MaLR 1 382 -44 1253 150 191 24 chr12 17520511 17520805 -126265650 - MSTA LTR MaLR -85 343 1 349 135 0 0 chr12 17520805 17520853 -126265602 + MSTB LTR MaLR 379 426 0 7739 173 90 11 chr12 17520853 17522383 -126264072 + MSTB-int LTR MaLR 1 1651 0 2675 135 49 5 chr12 17522383 17522791 -126263664 + MSTB LTR MaLR 1 426 0 4758 217 92 80 chr12 17522880 17523804 -126262651 + L1MCa LINE L1 16 928 -5498 2822 3 0 0 chr12 17523804 17524107 -126262348 - AluYa5 SINE Alu -8 303 1 4758 217 92 80 chr12 17524107 17527660 -126258795 + L1MCa LINE L1 928 4465 -1961 1169 233 164 32 chr12 17527662 17528100 -126258355 + MLT1D LTR MaLR 3 498 -7 531 269 90 0 chr12 17528105 17528306 -126258149 + L1MCa LINE L1 4459 4677 -1749 4987 175 56 22 chr12 17528325 17529473 -126256982 + L1MC3 LINE L1 6599 7785 0 2158 29 44 18 chr12 17529483 17529793 -126256662 + AluY SINE Alu 1 317 0 348 304 160 0 chr12 17529922 17530047 -126256408 - L2 LINE L2 -1 3271 3127 2360 91 0 35 chr12 17530244 17530562 -126255893 - AluSg SINE Alu -3 307 1 773 252 152 29 chr12 17530853 17531202 -126255253 + L2 LINE L2 2922 3313 0 234 256 0 0 chr12 17531492 17531535 -126254920 - MIR SINE MIR -138 70 28 366 255 21 0 chr12 17531824 17531918 -126254537 - MER5A DNA MER1_type -80 109 14 580 266 64 46 chr12 17532024 17532242 -126254213 + MIR SINE MIR 38 259 -3 387 0 0 0 chr12 17533912 17533955 -126252500 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 288 91 53 chr12 17534371 17534503 -126251952 - MER5B DNA MER1_type -2 176 51 227 257 29 57 chr12 17534544 17534614 -126251841 - L2 LINE L2 -1 3271 3204 187 250 0 0 chr12 17535324 17535372 -126251083 + MIR SINE MIR 51 98 -164 216 321 47 65 chr12 17535374 17535589 -126250866 - L2 LINE L2 -667 2647 2437 23 0 0 0 chr12 17537143 17537166 -126249289 + AT_rich Low_complexity Low_complexity 1 23 0 25 83 0 0 chr12 17537594 17537654 -126248801 + AT_rich Low_complexity Low_complexity 1 60 0 386 273 43 43 chr12 17537959 17538098 -126248357 - MIR SINE MIR -100 162 24 511 283 13 0 chr12 17538397 17538549 -126247906 + MIR3 SINE MIR 49 202 -6 404 243 104 21 chr12 17539480 17539624 -126246831 - MIR3 SINE MIR -9 199 44 469 250 104 26 chr12 17540964 17541156 -126245299 + L3b LINE CR1 1178 1384 -199 794 183 112 6 chr12 17541252 17541421 -126245034 - MER5A DNA MER1_type -1 188 2 297 214 117 84 chr12 17542044 17542149 -126244306 - LTR67 LTR ERVL -12 545 432 2340 157 65 2 chr12 17542149 17542550 -126243905 - MSTA LTR MaLR -2 426 1 297 214 117 84 chr12 17542550 17542598 -126243857 - LTR67 LTR ERVL -125 432 387 255 83 0 0 chr12 17542609 17542645 -126243810 + U2 snRNA snRNA 1 36 -152 310 326 0 0 chr12 17542781 17542873 -126243582 - LTR67 LTR ERVL -385 172 81 2444 63 0 7 chr12 17543317 17543620 -126242835 - AluY SINE Alu -10 301 1 878 262 178 22 chr12 17543673 17544307 -126242148 - HAL1b LINE L1 -475 873 141 720 286 66 9 chr12 17547234 17547461 -126238994 - MIR SINE MIR -13 249 10 232 290 0 43 chr12 17547522 17547591 -126238864 - L3 LINE CR1 -3 1574 1509 3888 189 39 22 chr12 17548526 17549167 -126237288 + MER4D LTR ERV1 1 629 -274 2589 114 62 5 chr12 17549167 17549572 -126236883 + MSTA LTR MaLR 1 428 0 3888 189 39 22 chr12 17549572 17549599 -126236856 + MER4D LTR ERV1 629 654 -249 1481 203 54 135 chr12 17549599 17550265 -126236190 + LTR9 LTR ERV1 1 612 0 3888 189 39 22 chr12 17550265 17550467 -126235988 + MER4D LTR ERV1 654 887 -16 2198 113 0 3 chr12 17550626 17550910 -126235545 + AluSq SINE Alu 1 283 -30 1686 72 0 0 chr12 17551338 17551547 -126234908 + AluY SINE Alu 97 305 -6 1131 212 45 38 chr12 17551600 17551888 -126234567 + Charlie1b DNA MER1_type 5 294 -229 489 156 0 0 chr12 17551902 17551992 -126234463 + Charlie1b DNA MER1_type 428 517 -6 286 254 36 17 chr12 17552064 17552181 -126234274 + L1ME LINE L1 5467 5585 -536 1360 164 0 27 chr12 17552195 17552415 -126234040 + AluJo SINE Alu 1 214 -98 258 188 0 0 chr12 17552416 17552464 -126233991 + L1 LINE L1 3586 3633 -2513 21 0 0 0 chr12 17552467 17552488 -126233967 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr12 17552488 17552786 -126233669 - AluSx SINE Alu -14 298 1 9380 156 32 83 chr12 17552792 17555336 -126231119 + L1PA13 LINE L1 3627 6159 -4 1110 145 0 22 chr12 17555339 17555518 -126230937 + FRAM SINE Alu 1 175 -1 4795 133 32 45 chr12 17555518 17555807 -126230648 + L1MA4 LINE L1 5322 5613 -687 1573 98 0 0 chr12 17555807 17556012 -126230443 + AluSp SINE Alu 106 310 -3 4795 133 32 45 chr12 17556012 17556710 -126229745 + L1MA4 LINE L1 5613 6297 -3 4005 121 180 81 chr12 17557530 17558951 -126227504 + pTR5 LTR ERV1 743 2438 0 1905 101 78 46 chr12 17560331 17560679 -126225776 + MER46B DNA MER2_type 3 236 0 317 293 106 43 chr12 17560698 17561114 -126225341 - MLT1K LTR MaLR -36 552 111 187 365 58 19 chr12 17561320 17561476 -126224979 - L2 LINE L2 -824 2490 2329 227 294 112 49 chr12 17562248 17562391 -126224064 + L2 LINE L2 3101 3252 -20 1001 268 28 12 chr12 17562530 17562780 -126223675 + MIR SINE MIR 2 255 -7 669 222 36 5 chr12 17563048 17563242 -126223213 + L1MD3 LINE L1 7796 7995 0 321 279 203 33 chr12 17563302 17564030 -126222425 + L1ME4a LINE L1 5269 6120 -1 588 214 26 17 chr12 17564326 17564443 -126222012 + FLAM_A SINE Alu 5 122 -11 242 294 143 16 chr12 17564444 17564570 -126221885 + MIR SINE MIR 114 255 -7 415 280 42 28 chr12 17564822 17564965 -126221490 + L2 LINE L2 3169 3313 0 700 197 0 7 chr12 17565188 17565340 -126221115 - MER63 DNA MER1_type 0 1061 911 289 141 47 94 chr12 17565370 17565416 -126221039 - MER63 DNA MER1_type -129 707 660 2249 119 0 3 chr12 17565416 17565718 -126220737 - AluSg SINE Alu -8 302 2 289 141 47 94 chr12 17565718 17565756 -126220699 - MER63 DNA MER1_type -176 660 1 254 155 35 0 chr12 17566170 17566228 -126220227 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 1915 242 41 37 chr12 17566862 17567818 -126218637 - L1ME2 LINE L1 -2 6295 5370 695 246 20 15 chr12 17568757 17568956 -126217499 - MARNA DNA Mariner -18 568 369 328 280 51 25 chr12 17569356 17569513 -126216942 - MARNA DNA Mariner -228 358 198 240 274 83 0 chr12 17569571 17569655 -126216800 - MLT1I LTR MaLR -73 336 246 21 36 0 0 chr12 17570009 17570037 -126216418 + AT_rich Low_complexity Low_complexity 1 28 0 264 241 0 17 chr12 17571096 17571154 -126215301 + L2 LINE L2 3007 3063 -209 443 314 136 34 chr12 17571196 17571432 -126215023 - MIR SINE MIR -1 261 2 613 174 0 0 chr12 17571500 17571609 -126214846 - MER45B DNA AcHobo -368 672 564 962 179 19 82 chr12 17571609 17571877 -126214578 + MLT1A1 LTR MaLR 113 363 -2 271 310 123 29 chr12 17572003 17572174 -126214281 + MIR SINE MIR 6 192 -70 180 0 0 0 chr12 17574019 17574039 -126212416 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 449 244 89 16 chr12 17574276 17574399 -126212056 - MIR SINE MIR -44 218 87 586 179 137 24 chr12 17576973 17577141 -126209314 + LTR41 LTR ERVL 1 187 -586 441 252 29 81 chr12 17577192 17577438 -126209017 + LTR41 LTR ERVL 462 694 -79 454 305 39 19 chr12 17577556 17577710 -126208745 - MER91A DNA MER1_type -22 174 18 217 345 0 0 chr12 17577764 17577822 -126208633 - L2 LINE L2 -93 3179 3122 2253 227 28 30 chr12 17577885 17577950 -126208505 - MLT1F LTR MaLR -9 533 469 2028 186 38 26 chr12 17577950 17578375 -126208080 + MSTB1 LTR MaLR 1 430 -2 2253 227 28 30 chr12 17578375 17578843 -126207612 - MLT1F LTR MaLR -73 469 1 216 135 0 0 chr12 17579687 17579724 -126206731 + (CA)n Simple_repeat Simple_repeat 2 38 0 668 253 30 36 chr12 17580028 17580333 -126206122 - AluSq SINE Alu 0 303 1 21 0 0 0 chr12 17580545 17580566 -126205889 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 17580702 17580737 -126205718 + GC_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr12 17580764 17580828 -126205627 + GC_rich Low_complexity Low_complexity 1 64 0 2244 124 0 6 chr12 17581388 17581703 -126204752 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 17581909 17581930 -126204525 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr12 17582131 17582164 -126204291 + (CA)n Simple_repeat Simple_repeat 2 34 0 973 220 31 102 chr12 17582525 17582907 -126203548 + MLT2D LTR ERVL 15 369 -45 225 91 0 0 chr12 17582927 17582960 -126203495 - MLT2D LTR ERVL 0 414 382 271 161 18 0 chr12 17583006 17583062 -126203393 + MLT2D LTR ERVL 464 520 0 399 232 92 8 chr12 17583362 17583482 -126202973 - MLT1H LTR MaLR 0 542 420 323 244 113 9 chr12 17583587 17583702 -126202753 - MLT1H LTR MaLR -307 242 116 2384 143 64 2 chr12 17584131 17584538 -126201917 + MSTB1 LTR MaLR 1 432 0 227 198 24 180 chr12 17584730 17584897 -126201558 + MIR SINE MIR 120 260 -2 2408 43 0 0 chr12 17586538 17586815 -126199640 + AluY SINE Alu 3 279 -32 207 0 0 0 chr12 17586818 17586841 -126199614 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 309 0 0 chr12 17587278 17587333 -126199122 + L2 LINE L2 3198 3252 -61 1041 166 0 17 chr12 17588246 17588421 -126198034 + AluJo SINE Alu 126 297 -15 560 217 32 74 chr12 17588724 17588913 -126197542 + MIR SINE MIR 12 192 -70 21 82 0 0 chr12 17588929 17588978 -126197477 + AT_rich Low_complexity Low_complexity 1 49 0 2178 128 3 3 chr12 17589128 17589434 -126197021 + AluSx SINE Alu 1 306 -6 249 108 0 0 chr12 17589822 17589859 -126196596 + (CA)n Simple_repeat Simple_repeat 1 37 0 623 169 81 16 chr12 17591529 17591653 -126194802 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr12 17592055 17592079 -126194376 + AT_rich Low_complexity Low_complexity 1 24 0 663 215 36 113 chr12 17592404 17592678 -126193777 - MER102b DNA MER1_type -5 336 84 220 91 0 55 chr12 17592679 17592734 -126193721 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 493 178 0 59 chr12 17592856 17592974 -126193481 - THE1C LTR MaLR -264 111 1 10374 111 36 8 chr12 17592974 17594511 -126191944 - THE1C-int LTR MaLR 0 1580 1 453 111 0 0 chr12 17594552 17594615 -126191840 + L1PA7 LINE L1 6077 6139 -15 463 222 6 11 chr12 17594654 17594834 -126191621 + (TA)n Simple_repeat Simple_repeat 1 179 0 1761 107 103 19 chr12 17594834 17595161 -126191294 - THE1C LTR MaLR -23 409 1 1435 206 34 3 chr12 17595161 17595457 -126190998 + MLT1A1 LTR MaLR 61 365 0 202 269 11 65 chr12 17596419 17596512 -126189943 + MIR SINE MIR 125 212 -50 2315 96 3 0 chr12 17596522 17596824 -126189631 - AluSp SINE Alu -10 303 1 555 262 14 0 chr12 17596950 17597095 -126189360 + MER58B DNA MER1_type 195 341 0 216 0 0 0 chr12 17598086 17598110 -126188345 + (T)n Simple_repeat Simple_repeat 1 24 0 327 307 112 63 chr12 17598310 17598515 -126187940 - MIR SINE MIR -24 238 24 1730 185 46 6 chr12 17599075 17599426 -126187029 - MLT1A1 LTR MaLR 0 365 1 333 258 111 35 chr12 17599678 17600156 -126186299 + L1MC4 LINE L1 7278 7893 -149 454 75 43 21 chr12 17600157 17600251 -126186204 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 288 281 9 9 chr12 17600271 17600385 -126186070 + L1MC4 LINE L1 7929 8042 0 410 239 130 57 chr12 17600396 17600626 -126185829 + L1ME3 LINE L1 5895 6141 -21 594 265 33 7 chr12 17601402 17601553 -126184902 + L2 LINE L2 3159 3313 0 570 288 55 55 chr12 17601715 17602059 -126184396 - MLT1J1 LTR MaLR 0 446 103 712 194 32 75 chr12 17602099 17602285 -126184170 + MER45A DNA AcHobo 1 178 0 5012 151 21 37 chr12 17603036 17605115 -126181340 - L1PB4 LINE L1 -2 6154 4116 1600 206 97 9 chr12 17605117 17605549 -126180906 - L1ME1 LINE L1 -298 5868 5399 1351 273 42 50 chr12 17605652 17605777 -126180678 - L1MEc LINE L1 -4712 1684 1560 1901 160 27 0 chr12 17605777 17606070 -126180385 + AluSx SINE Alu 1 301 -11 1351 273 42 50 chr12 17606070 17606191 -126180264 - L1MEc LINE L1 -4836 1560 1440 1739 167 32 35 chr12 17606191 17606503 -126179952 - AluJo SINE Alu -1 311 1 1351 273 42 50 chr12 17606503 17606811 -126179644 - L1MEc LINE L1 -4956 1440 1134 2379 110 22 27 chr12 17606811 17607176 -126179279 - THE1B LTR MaLR -1 363 1 1351 273 42 50 chr12 17607176 17607425 -126179030 - L1MEc LINE L1 -5262 1134 885 1137 264 43 14 chr12 17607457 17607828 -126178627 - L1MEc LINE L1 -5980 416 35 2334 106 0 0 chr12 17607836 17608137 -126178318 - AluSx SINE Alu -11 301 1 21 0 0 0 chr12 17609340 17609361 -126177094 + AT_rich Low_complexity Low_complexity 1 21 0 197 310 206 43 chr12 17610026 17610423 -126176032 - L2 LINE L2 -889 2425 1964 915 135 45 0 chr12 17610516 17610672 -126175783 + THE1A LTR MaLR 62 224 -131 310 279 77 5 chr12 17610805 17611013 -126175442 + L1ME4a LINE L1 5651 5873 -248 207 344 16 0 chr12 17612077 17612141 -126174314 + L2 LINE L2 3204 3268 -4 424 274 109 25 chr12 17612257 17612292 -126174163 - MIR SINE MIR 0 262 231 396 0 0 0 chr12 17612292 17612336 -126174119 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 424 274 109 25 chr12 17612336 17612501 -126173954 - MIR SINE MIR -31 231 45 24 53 0 0 chr12 17613033 17613071 -126173384 + AT_rich Low_complexity Low_complexity 1 38 0 2593 83 20 0 chr12 17613077 17613425 -126173030 + THE1A LTR MaLR 1 355 0 458 178 188 0 chr12 17613447 17613548 -126172907 - FLAM_C SINE Alu -23 120 1 500 99 0 12 chr12 17613724 17613805 -126172650 + (TA)n Simple_repeat Simple_repeat 2 81 0 2299 151 61 7 chr12 17614334 17614744 -126171711 + MSTB1 LTR MaLR 1 432 0 359 301 91 0 chr12 17615591 17615734 -126170721 - L1ME LINE L1 -422 5699 5544 262 372 69 14 chr12 17615934 17616079 -126170376 - L2 LINE L2 -4 3268 3116 656 274 65 74 chr12 17616920 17617351 -126169104 + LTR16A LTR ERVL 20 446 -4 309 196 77 115 chr12 17617921 17618130 -126168325 - L1MC5 LINE L1 -439 7522 7322 574 217 99 103 chr12 17618183 17618245 -126168210 - L1MC5 LINE L1 -1055 6906 6845 2007 132 0 0 chr12 17618245 17618563 -126167892 - AluSx SINE Alu 0 323 6 574 217 99 103 chr12 17618563 17618770 -126167685 - L1MC5 LINE L1 -1116 6845 6636 369 313 55 39 chr12 17619226 17619810 -126166645 - HAL1b LINE L1 -718 630 38 513 271 150 10 chr12 17620768 17620975 -126165480 - MIR SINE MIR -7 255 20 23 68 0 0 chr12 17620981 17621025 -126165430 + AT_rich Low_complexity Low_complexity 1 44 0 578 311 75 37 chr12 17621374 17621615 -126164840 + MIR SINE MIR 9 258 -4 474 261 45 20 chr12 17623143 17623342 -126163113 - Zaphod DNA AcHobo -2674 1357 1154 1032 214 52 18 chr12 17623349 17623681 -126162774 + MER74C LTR ERVL 2 489 -133 1285 189 59 75 chr12 17623681 17624052 -126162403 - MLT1A1 LTR MaLR 0 365 1 1032 214 52 18 chr12 17624052 17624158 -126162297 + MER74C LTR ERVL 489 590 -32 2791 226 88 67 chr12 17624181 17624328 -126162127 - Zaphod DNA AcHobo -2868 1163 1021 2065 100 0 14 chr12 17624328 17624608 -126161847 - AluSc SINE Alu -33 276 1 2791 226 88 67 chr12 17624608 17625026 -126161429 - Zaphod DNA AcHobo -3010 1021 613 855 183 4 108 chr12 17625026 17625266 -126161189 + MER20 DNA MER1_type 1 215 -4 2791 226 88 67 chr12 17625266 17625838 -126160617 - Zaphod DNA AcHobo -3418 613 1 430 195 9 18 chr12 17626701 17626814 -126159641 + CT-rich Low_complexity Low_complexity 1 112 0 220 319 118 34 chr12 17627442 17627561 -126158894 + MIR SINE MIR 71 199 -63 2447 54 0 0 chr12 17628031 17628325 -126158130 - AluY SINE Alu -17 294 1 223 321 0 0 chr12 17628513 17628566 -126157889 - MIR SINE MIR -10 252 200 512 56 0 0 chr12 17628737 17628809 -126157646 + Alu SINE Alu 236 307 -5 264 345 132 23 chr12 17629601 17629821 -126156634 - L2 LINE L2 -896 2418 2175 2391 112 0 14 chr12 17630683 17631041 -126155414 + THE1B LTR MaLR 1 353 -11 454 188 107 9 chr12 17631245 17631357 -126155098 - MER112 DNA MER1_type -27 233 111 1867 216 22 13 chr12 17631484 17631942 -126154513 + MLT1C LTR MaLR 1 462 -5 1704 195 17 66 chr12 17632749 17633055 -126153400 - MLT1C LTR MaLR 0 467 191 2270 86 0 0 chr12 17633055 17633358 -126153097 - AluSc SINE Alu 0 303 1 1704 195 17 66 chr12 17633358 17633532 -126152923 - MLT1C LTR MaLR -276 191 10 236 239 0 14 chr12 17633950 17634021 -126152434 - MLT1B LTR MaLR -183 207 138 816 286 53 0 chr12 17634515 17634760 -126151695 + MIR SINE MIR 5 262 0 1398 70 0 0 chr12 17634902 17635073 -126151382 - AluY SINE Alu -10 301 131 210 343 0 0 chr12 17636212 17636279 -126150176 - MIR3 SINE MIR -11 197 131 433 344 68 52 chr12 17636322 17636648 -126149807 + L2 LINE L2 2956 3286 -27 403 287 7 75 chr12 17637053 17637234 -126149221 + MER5B DNA MER1_type 4 184 -5 1530 162 159 14 chr12 17637365 17637711 -126148744 + MSTD LTR MaLR 1 396 0 378 228 29 59 chr12 17639230 17639366 -126147089 + MER106A DNA MER1_type 8 139 -97 185 216 0 59 chr12 17639971 17640022 -126146433 - L2 LINE L2 0 3313 3266 1609 188 15 18 chr12 17640022 17640352 -126146103 - MSTD LTR MaLR 0 396 68 1384 191 23 0 chr12 17640356 17640613 -126145842 + AluJb SINE Alu 6 268 -44 243 0 0 0 chr12 17640619 17640646 -126145809 + (CA)n Simple_repeat Simple_repeat 2 28 0 392 173 13 0 chr12 17640653 17640728 -126145727 - MSTD LTR MaLR -320 76 1 371 291 96 66 chr12 17640850 17640992 -126145463 - L1ME4a LINE L1 -294 5827 5691 2232 127 0 3 chr12 17640992 17641300 -126145155 - AluSx SINE Alu -5 307 1 371 291 96 66 chr12 17641300 17641490 -126144965 - L1ME4a LINE L1 -430 5691 5485 239 231 0 94 chr12 17642185 17642302 -126144153 - L1ME4a LINE L1 -2380 5428 5323 647 329 76 32 chr12 17643883 17644381 -126142074 - MLT1K LTR MaLR 0 588 69 286 321 164 19 chr12 17644933 17645201 -126141254 + L2 LINE L2 2167 2473 -841 656 272 126 60 chr12 17645307 17645770 -126140685 - L2 LINE L2 -31 3282 2751 2146 110 14 0 chr12 17645770 17646060 -126140395 + AluY SINE Alu 1 294 -17 656 272 126 60 chr12 17646060 17646158 -126140297 - L2 LINE L2 -562 2751 2661 1346 189 41 107 chr12 17646167 17646379 -126140076 + MLT1B LTR MaLR 1 175 -215 2272 199 22 113 chr12 17646379 17646554 -126139901 + LTR8 LTR ERV1 1 190 -501 2366 92 0 0 chr12 17646554 17646860 -126139595 - AluSx SINE Alu -6 306 1 2272 199 22 113 chr12 17646860 17647444 -126139011 + LTR8 LTR ERV1 190 691 0 1346 189 41 107 chr12 17647444 17647644 -126138811 + MLT1B LTR MaLR 175 386 -4 276 290 80 0 chr12 17647676 17647776 -126138679 - MLT1J2 LTR MaLR -65 385 278 3878 284 128 4 chr12 17649642 17651013 -126135442 - L2 LINE L2 -653 2661 1121 335 225 139 7 chr12 17651031 17651182 -126135273 - LTR50 LTR ERVL 0 795 625 560 211 193 6 chr12 17651225 17651386 -126135069 - LTR50 LTR ERVL -604 191 1 356 277 78 14 chr12 17651387 17651528 -126134927 - L2 LINE L2 -2207 1107 958 242 286 36 0 chr12 17651533 17651617 -126134838 - MER91C DNA MER1_type -53 87 1 270 85 0 0 chr12 17652550 17652597 -126133858 - L1MB4 LINE L1 0 6180 6134 278 301 55 48 chr12 17653456 17653602 -126132853 - L2 LINE L2 -69 3244 3098 904 67 0 8 chr12 17655584 17655703 -126130752 + L1PA16 LINE L1 6040 6157 -9 207 0 0 0 chr12 17657213 17657236 -126129219 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 262 259 0 0 chr12 17657239 17657293 -126129162 - L2 LINE L2 -33 3239 3186 398 313 98 0 chr12 17657475 17657638 -126128817 + MIR SINE MIR 9 187 -75 180 125 0 0 chr12 17657703 17657735 -126128720 + (CTATA)n Simple_repeat Simple_repeat 2 33 0 210 315 65 46 chr12 17658359 17658467 -126127988 - MIR SINE MIR -58 150 41 2334 105 0 3 chr12 17658811 17659117 -126127338 - AluSx SINE Alu -7 305 1 182 257 76 76 chr12 17659812 17659956 -126126499 - MER5B DNA MER1_type -5 173 30 433 264 49 28 chr12 17659989 17660133 -126126322 + MIR SINE MIR 7 153 -109 2631 219 91 30 chr12 17660141 17661781 -126124674 + L1ME2 LINE L1 4415 6170 0 338 291 19 0 chr12 17662703 17662806 -126123649 + L3 LINE CR1 1259 1363 -214 195 319 22 33 chr12 17662841 17662932 -126123523 - L3 LINE CR1 -110 1467 1378 586 272 130 0 chr12 17662969 17663153 -126123302 + MIR SINE MIR 50 257 -5 212 387 0 0 chr12 17663162 17663237 -126123218 + L3 LINE CR1 1471 1545 -32 203 356 0 0 chr12 17663644 17663703 -126122752 - L2 LINE L2 -10 3303 3245 1281 244 141 8 chr12 17663821 17664210 -126122245 - MLT1H LTR MaLR -103 446 6 383 331 53 0 chr12 17665677 17665810 -126120645 - MIR3 SINE MIR -38 170 31 26 0 0 0 chr12 17667191 17667217 -126119238 + AT_rich Low_complexity Low_complexity 1 26 0 379 323 63 21 chr12 17667847 17668036 -126118419 + MIR SINE MIR 22 218 -44 596 300 6 18 chr12 17669782 17669952 -126116503 - MER5A DNA MER1_type -21 168 1 968 260 41 8 chr12 17670230 17670472 -126115983 + MIR SINE MIR 13 262 0 891 223 33 33 chr12 17670979 17671194 -126115261 + MER20 DNA MER1_type 4 218 -1 222 118 0 0 chr12 17671821 17671855 -126114600 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 239 73 12 chr12 17672559 17672682 -126113773 + MIR3 SINE MIR 47 205 -3 1848 144 0 14 chr12 17672760 17673038 -126113417 - AluJb SINE Alu -38 274 1 612 312 48 26 chr12 17674484 17674849 -126111606 + MLT1K LTR MaLR 17 422 -166 4058 206 34 59 chr12 17674902 17675967 -126110488 + MER45B DNA AcHobo 3 1040 0 1750 176 15 76 chr12 17675976 17676385 -126110070 - MLT1B LTR MaLR 0 390 7 272 242 11 55 chr12 17676392 17676483 -126109972 + MLT1K LTR MaLR 491 577 -11 23 0 0 0 chr12 17676659 17676682 -126109773 + AT_rich Low_complexity Low_complexity 1 23 0 296 245 118 0 chr12 17677775 17677877 -126108578 - MARNA DNA Mariner -38 548 435 276 333 49 0 chr12 17677794 17677896 -126108559 + MARNA DNA Mariner 64 170 -416 * 351 113 0 0 chr12 17678002 17678055 -126108400 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 252 279 184 14 chr12 17678071 17678218 -126108237 - MARNA DNA Mariner -336 250 79 342 80 0 0 chr12 17678244 17678294 -126108161 + (CA)n Simple_repeat Simple_repeat 2 51 0 209 239 0 0 chr12 17678916 17678962 -126107493 + L2 LINE L2 3224 3269 -3 183 304 98 11 chr12 17679263 17679355 -126107100 + L2 LINE L2 3151 3250 -22 1629 181 20 17 chr12 17679355 17679653 -126106802 - AluJo SINE Alu -10 302 4 220 250 36 0 chr12 17680278 17680334 -126106121 + CT-rich Low_complexity Low_complexity 3 60 0 1998 153 3 0 chr12 17680351 17680652 -126105803 - AluSx SINE Alu -10 302 1 1453 236 109 27 chr12 17681267 17681889 -126104566 - L1MC5 LINE L1 -53 7908 7236 2545 68 0 0 chr12 17682614 17682925 -126103530 - AluY SINE Alu 0 311 1 972 26 0 0 chr12 17683136 17683249 -126103206 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17683258 17683412 -126103043 - MIR SINE MIR -61 147 2 269 233 70 12 chr12 17683506 17683592 -126102863 - MER103 DNA DNA -49 117 27 398 289 56 21 chr12 17683654 17683796 -126102659 + MIR3 SINE MIR 30 176 -32 381 281 74 20 chr12 17683868 17684070 -126102385 + L2 LINE L2 2287 2499 -815 339 328 108 16 chr12 17684070 17684256 -126102199 + MIR SINE MIR 2 204 -58 256 384 53 0 chr12 17684282 17684488 -126101967 + L2 LINE L2 2511 2727 -587 708 273 13 70 chr12 17684693 17684993 -126101462 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17685021 17685105 -126101350 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17686501 17686535 -126099920 + (GA)n Simple_repeat Simple_repeat 2 35 0 608 335 29 0 chr12 17687227 17687436 -126099019 + MIR SINE MIR 27 241 -21 2215 97 37 0 chr12 17687498 17687797 -126098658 - AluSg SINE Alu 0 310 1 409 332 51 17 chr12 17688179 17688414 -126098041 + MIR SINE MIR 20 262 0 392 304 16 73 chr12 17690321 17690512 -126095943 - MER5A DNA MER1_type 0 189 10 485 257 46 57 chr12 17691991 17692166 -126094289 - MIR SINE MIR -88 174 2 423 257 114 9 chr12 17692202 17692307 -126094148 + L2 LINE L2 3198 3313 0 331 318 133 17 chr12 17693711 17693884 -126092571 + MIR SINE MIR 2 194 -68 204 163 0 0 chr12 17693945 17693988 -126092467 + CT-rich Low_complexity Low_complexity 2 44 0 230 312 78 0 chr12 17694256 17694333 -126092122 + L2 LINE L2 3191 3273 -40 491 284 56 19 chr12 17694524 17694686 -126091769 - MIR SINE MIR -48 214 47 305 329 148 0 chr12 17695307 17695462 -126090993 - MIR SINE MIR -6 256 79 585 0 0 0 chr12 17695482 17695547 -126090908 + (GA)n Simple_repeat Simple_repeat 1 65 0 189 250 0 109 chr12 17696385 17696449 -126090006 + MIR SINE MIR 26 82 -126 * 313 353 0 20 chr12 17696447 17696549 -126089906 + L2 LINE L2 3172 3271 -1 435 119 0 0 chr12 17696894 17696961 -126089494 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 277 318 0 0 chr12 17697763 17697829 -126088626 + L2 LINE L2 3172 3237 -35 234 207 0 0 chr12 17698064 17698122 -126088333 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 285 149 19 chr12 17699136 17699350 -126087105 + MIR SINE MIR 20 261 -1 240 296 102 9 chr12 17700095 17700203 -126086252 - MIR3 SINE MIR -10 198 81 1075 231 39 103 chr12 17700581 17701114 -126085341 + LTR53 LTR ERVL 21 519 0 410 219 78 23 chr12 17701318 17701446 -126085009 + L1MA4 LINE L1 6161 6295 -5 209 57 29 0 chr12 17701881 17701916 -126084539 + (TAA)n Simple_repeat Simple_repeat 2 37 0 374 327 76 39 chr12 17702288 17702685 -126083770 + L1ME LINE L1 2819 3236 -2910 5778 143 23 28 chr12 17702895 17703176 -126083279 + L1MA7 LINE L1 4591 4872 -1419 2348 109 19 24 chr12 17703176 17703552 -126082903 + THE1C LTR MaLR 1 374 -1 5778 143 23 28 chr12 17703552 17704974 -126081481 + L1MA7 LINE L1 4872 6289 -2 389 316 94 46 chr12 17705052 17705486 -126080969 + L1ME LINE L1 3761 4215 -1931 1812 133 71 17 chr12 17705877 17706171 -126080284 + AluSx SINE Alu 3 312 0 26 50 0 0 chr12 17706259 17706299 -126080156 + AT_rich Low_complexity Low_complexity 1 40 0 580 327 59 20 chr12 17706793 17707233 -126079222 + L1ME LINE L1 5311 5767 -354 213 39 0 0 chr12 17707235 17707261 -126079194 + (TA)n Simple_repeat Simple_repeat 2 27 0 312 310 0 0 chr12 17707272 17707359 -126079096 - L1MC4 LINE L1 -1335 6707 6621 497 287 67 20 chr12 17707874 17708069 -126078386 + MIR SINE MIR 53 256 -6 249 303 15 0 chr12 17708256 17708322 -126078133 - MIR SINE MIR -110 152 86 249 188 47 47 chr12 17708871 17708935 -126077520 + L2 LINE L2 3250 3313 0 435 358 66 56 chr12 17709228 17709344 -126077111 + L2 LINE L2 1146 1259 -2055 2373 74 3 23 chr12 17709344 17709654 -126076801 - AluSq SINE Alu -9 304 1 435 358 66 56 chr12 17709654 17710096 -126076359 + L2 LINE L2 1259 1713 -1601 1506 175 26 29 chr12 17710096 17710404 -126076051 + AluJo SINE Alu 6 312 0 435 358 66 56 chr12 17710404 17710419 -126076036 + L2 LINE L2 1713 1726 -1588 570 128 30 163 chr12 17710431 17710634 -126075821 - MER53 DNA DNA -13 176 1 1055 328 96 76 chr12 17710636 17711925 -126074530 + L2 LINE L2 1722 3034 -238 269 288 42 108 chr12 17712255 17712467 -126073988 - MIR SINE MIR -52 210 13 1479 312 122 30 chr12 17714109 17714961 -126071494 + L3 LINE CR1 325 1254 -323 321 291 93 0 chr12 17715042 17715128 -126071327 - MIR SINE MIR -168 94 1 258 206 206 27 chr12 17715143 17715216 -126071239 + L3 LINE CR1 1252 1337 -240 184 229 42 0 chr12 17715298 17715346 -126071109 + L3 LINE CR1 1523 1572 -5 289 278 143 23 chr12 17715757 17715890 -126070565 + MIR SINE MIR 65 213 -49 796 251 99 103 chr12 17715963 17716624 -126069831 + MER21B LTR ERV1 60 646 -217 2484 78 0 3 chr12 17716624 17716931 -126069524 + AluSc SINE Alu 1 306 -3 273 299 103 8 chr12 17717218 17717335 -126069120 - MIR SINE MIR -81 181 54 347 296 45 30 chr12 17717544 17717676 -126068779 + L2 LINE L2 3175 3308 -5 741 313 12 19 chr12 17719139 17719395 -126067060 + MIR SINE MIR 9 262 0 248 180 16 33 chr12 17719415 17719476 -126066979 - MIR SINE MIR -17 245 186 27 29 0 0 chr12 17719603 17719637 -126066818 + AT_rich Low_complexity Low_complexity 1 34 0 501 216 16 60 chr12 17719725 17719910 -126066545 + L1MC5 LINE L1 7711 7887 -74 349 208 75 33 chr12 17719926 17720046 -126066409 + L1ME4a LINE L1 5967 6091 -30 1983 182 6 0 chr12 17720106 17720452 -126066003 - MER7A DNA MER2_type 0 346 1 186 43 0 0 chr12 17720548 17720571 -126065884 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 989 275 17 42 chr12 17721854 17722207 -126064248 + L2 LINE L2 471 814 -2500 812 221 74 0 chr12 17722216 17722379 -126064076 + MER58A DNA MER1_type 1 175 -49 315 244 44 0 chr12 17722388 17722478 -126063977 + L2 LINE L2 819 912 -2402 312 316 17 26 chr12 17722492 17722609 -126063846 + L2 LINE L2 3197 3312 -1 917 302 163 15 chr12 17722864 17723612 -126062843 - L2 LINE L2 -1 3312 2455 339 86 0 52 chr12 17723751 17723809 -126062646 + MADE1 DNA Mariner 1 55 -25 598 285 132 21 chr12 17723811 17724046 -126062409 - MIR SINE MIR -1 261 1 256 314 42 2 chr12 17724180 17724300 -126062155 - MIR SINE MIR -66 142 28 26 30 0 0 chr12 17724830 17724863 -126061592 + AT_rich Low_complexity Low_complexity 1 33 0 2426 61 0 7 chr12 17725423 17725717 -126060738 - AluSc SINE Alu -17 292 1 5294 39 0 3 chr12 17726427 17727066 -126059389 - L1PA5 LINE L1 0 6154 5518 2754 35 14 0 chr12 17727066 17727514 -126058941 + L1PA5 LINE L1 5052 5503 -651 336 329 58 0 chr12 17727616 17727753 -126058702 + MIR SINE MIR 48 192 -70 1570 172 63 13 chr12 17727759 17728062 -126058393 + MER2 DNA MER2_type 13 330 -15 24 67 0 0 chr12 17728185 17728230 -126058225 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr12 17728849 17728879 -126057576 + AT_rich Low_complexity Low_complexity 1 30 0 278 327 71 9 chr12 17729053 17729166 -126057289 - L2 LINE L2 -8 3264 3145 935 327 73 37 chr12 17730176 17730248 -126056207 + L2 LINE L2 2459 2527 -745 2493 157 16 16 chr12 17730248 17730682 -126055773 + Tigger2a DNA MER2_type 1 434 0 935 327 73 37 chr12 17730682 17731131 -126055324 + L2 LINE L2 2527 3011 -261 420 20 0 0 chr12 17731337 17731386 -126055069 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 17731410 17731432 -126055023 + AT_rich Low_complexity Low_complexity 1 22 0 274 348 61 30 chr12 17731583 17731813 -126054642 - L2 LINE L2 -1527 1787 1551 21 36 0 0 chr12 17732300 17732328 -126054127 + AT_rich Low_complexity Low_complexity 1 28 0 2430 64 0 32 chr12 17732333 17732646 -126053809 + AluY SINE Alu 1 303 -8 999 285 157 70 chr12 17732948 17734335 -126052120 + HAL1 LINE L1 1 1508 -999 1974 161 0 0 chr12 17734335 17734729 -126051726 + AluSx SINE Alu 1 394 0 815 196 235 18 chr12 17734970 17735277 -126051178 - MER58D DNA MER1_type -15 371 1 608 253 148 0 chr12 17735420 17735582 -126050873 + MER5A DNA MER1_type 4 189 0 1134 234 47 44 chr12 17735677 17736041 -126050414 - MLT1A1 LTR MaLR 0 365 1 654 104 0 0 chr12 17736950 17737046 -126049409 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 2481 58 0 10 chr12 17740047 17740355 -126046100 + AluY SINE Alu 1 305 -6 253 190 17 35 chr12 17740543 17740601 -126045854 - MIR SINE MIR 0 262 206 2483 69 0 3 chr12 17742511 17742814 -126043641 - AluY SINE Alu -9 302 1 320 247 177 48 chr12 17744131 17744317 -126042138 + MIR SINE MIR 47 256 -6 1297 196 69 45 chr12 17744716 17744897 -126041558 - MER58B DNA MER1_type -2080 340 146 2215 112 6 6 chr12 17744897 17745210 -126041245 - AluSp SINE Alu 0 313 1 1297 196 69 45 chr12 17745210 17745360 -126041095 - MER58B DNA MER1_type -2274 146 1 353 320 15 89 chr12 17745360 17745563 -126040892 + MIR3 SINE MIR 12 199 -9 25 31 0 0 chr12 17746884 17746916 -126039539 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 17747575 17747618 -126038837 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 17748407 17748430 -126038025 + AT_rich Low_complexity Low_complexity 1 23 0 940 214 124 10 chr12 17748586 17748876 -126037579 - MER5C DNA MER1_type -1 323 1 1008 299 138 47 chr12 17749066 17750186 -126036269 - L2 LINE L2 0 3272 2027 214 277 0 0 chr12 17751478 17751525 -126034930 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 265 353 43 9 chr12 17751770 17751886 -126034569 + MIR3 SINE MIR 9 128 -80 396 372 68 15 chr12 17752241 17752580 -126033875 + L1MC5 LINE L1 4785 5141 -1005 9889 200 31 33 chr12 17752771 17755291 -126031164 + L1MB2 LINE L1 2865 5388 -783 751 203 0 0 chr12 17755291 17755424 -126031031 + FLAM_C SINE Alu 1 133 0 9889 200 31 33 chr12 17755424 17756168 -126030287 + L1MB2 LINE L1 5388 6132 -39 1620 132 8 0 chr12 17756164 17756407 -126030048 - L1MA5A LINE L1 -409 5888 5644 * 2716 110 42 0 chr12 17756407 17756832 -126029623 + L1MA5A LINE L1 5847 6291 -6 303 95 0 79 chr12 17756889 17756952 -126029503 + L1MB2 LINE L1 6106 6163 -8 1688 249 25 23 chr12 17756952 17757470 -126028985 + L1MC5 LINE L1 5297 5815 -1993 1618 248 56 63 chr12 17757632 17758280 -126028175 + L1MC5 LINE L1 6823 7474 -487 2439 58 0 0 chr12 17758280 17758573 -126027882 + AluY SINE Alu 1 293 -18 1618 248 56 63 chr12 17758573 17758616 -126027839 + L1MC5 LINE L1 7474 7516 -445 360 0 0 0 chr12 17758616 17758656 -126027799 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1618 248 56 63 chr12 17758656 17758799 -126027656 + L1MC5 LINE L1 7516 7652 -309 21 36 0 0 chr12 17758914 17758942 -126027513 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 31 31 chr12 17759025 17759123 -126027332 + L1MC5 LINE L1 7827 7924 -37 599 137 145 34 chr12 17759822 17759939 -126026516 - MER58B DNA MER1_type 0 341 212 756 222 71 0 chr12 17760421 17760682 -126025773 - MLT1E1 LTR MaLR -398 256 1 229 135 0 0 chr12 17760684 17760721 -126025734 + (T)n Simple_repeat Simple_repeat 1 180 0 1378 159 4 26 chr12 17760721 17760954 -126025501 - AluJb SINE Alu 0 350 86 495 197 11 6 chr12 17760964 17761136 -126025319 + CT-rich Low_complexity Low_complexity 1 172 0 753 313 86 29 chr12 17761136 17761484 -126024971 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17761787 17762153 -126024302 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17762178 17762744 -126023711 - L1M4 LINE L1 -810 5336 4747 2529 214 112 17 chr12 17762772 17763785 -126022670 - L1ME1 LINE L1 -5 6161 5053 279 291 39 19 chr12 17763785 17763888 -126022567 - MIR SINE MIR -63 145 41 486 287 50 95 chr12 17764306 17764347 -126022108 - L2 LINE L2 -407 2907 2866 2175 128 22 27 chr12 17764347 17764713 -126021742 + THE1B LTR MaLR 1 364 0 11999 89 5 1 chr12 17764713 17766287 -126020168 + THE1B-int LTR MaLR 1 1580 0 2257 128 19 27 chr12 17766287 17766654 -126019801 + THE1B LTR MaLR 1 364 0 486 287 50 95 chr12 17766654 17767011 -126019444 - L2 LINE L2 -445 2869 2525 1875 171 0 13 chr12 17767186 17767485 -126018970 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17768704 17768733 -126017722 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17769303 17769401 -126017054 + CT-rich Low_complexity Low_complexity 5 95 0 1451 179 47 33 chr12 17769436 17769737 -126016718 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17769799 17770036 -126016419 + AluSx SINE Alu 2 239 -73 451 248 40 60 chr12 17770479 17770521 -126015934 - MER5A DNA MER1_type -1 188 147 1530 179 45 70 chr12 17770521 17770895 -126015560 + MLT1A1 LTR MaLR 1 365 0 451 248 40 60 chr12 17770895 17771001 -126015454 - MER5A DNA MER1_type -42 147 43 593 249 103 24 chr12 17771029 17771194 -126015261 + MER5B DNA MER1_type 1 178 0 472 240 23 39 chr12 17772341 17772470 -126013985 - MIR SINE MIR -114 148 22 189 229 0 0 chr12 17773262 17773310 -126013145 + GA-rich Low_complexity Low_complexity 4 51 0 486 268 114 23 chr12 17773777 17773997 -126012458 - MIR SINE MIR -2 260 21 196 339 32 0 chr12 17775333 17775395 -126011060 - MIR SINE MIR -76 132 69 22 0 0 0 chr12 17775432 17775454 -126011001 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 59 10 chr12 17775474 17775575 -126010880 - L1ME4a LINE L1 -7 6114 6009 79 44 0 0 chr12 17775584 17775698 -126010757 + AT_rich Low_complexity Low_complexity 1 114 0 323 296 176 49 chr12 17775825 17776149 -126010306 - L1ME4a LINE L1 -392 5729 5365 547 284 100 26 chr12 17777579 17777850 -126008605 + L2 LINE L2 3016 3306 -7 209 270 43 61 chr12 17778012 17778127 -126008328 + L2 LINE L2 2359 2471 -843 21 0 0 0 chr12 17778782 17778803 -126007652 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 17778832 17778853 -126007602 + (CA)n Simple_repeat Simple_repeat 2 22 0 417 230 0 72 chr12 17780577 17780716 -126005739 + MER94 DNA DNA 6 134 0 2128 116 44 41 chr12 17780909 17781272 -126005183 - THE1B LTR MaLR 0 364 1 353 296 45 30 chr12 17783045 17783177 -126003278 - L2 LINE L2 -5 3308 3175 275 299 103 8 chr12 17783386 17783503 -126002952 + MIR SINE MIR 54 181 -81 2535 58 0 10 chr12 17783789 17784099 -126002356 - AluSc SINE Alu -2 307 1 5337 36 0 3 chr12 17784809 17785448 -126001007 - L1PA5 LINE L1 0 6154 5518 2620 38 13 2 chr12 17785448 17785898 -126000557 + L1PA5 LINE L1 5052 5503 -651 386 332 46 14 chr12 17786498 17786715 -125999740 - ERVL LTR ERVL -1119 4645 4422 1065 226 97 20 chr12 17786720 17787070 -125999385 - MLT1D LTR MaLR 0 505 129 1005 161 21 36 chr12 17787070 17787262 -125999193 - AluJb SINE Alu -16 296 108 471 187 7 29 chr12 17787329 17787468 -125998987 + CT-rich Low_complexity Low_complexity 1 136 0 753 313 86 29 chr12 17787468 17787816 -125998639 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17788119 17788485 -125997970 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17788510 17789076 -125997379 - L1ME4a LINE L1 -810 5336 4747 435 234 24 0 chr12 17789090 17789214 -125997241 - L1MA10 LINE L1 0 6334 6208 2331 84 3 0 chr12 17789702 17790001 -125996454 + AluSx SINE Alu 1 300 -12 2315 103 0 0 chr12 17790212 17790522 -125995933 + AluSg SINE Alu 1 310 0 1161 218 70 32 chr12 17791305 17791806 -125994649 + L1MC5 LINE L1 7322 7841 -120 2370 73 0 0 chr12 17794360 17794663 -125991792 - AluY SINE Alu -8 303 1 1178 250 67 58 chr12 17794672 17795311 -125991144 - L1MC5 LINE L1 -494 7467 6823 22 35 0 0 chr12 17795776 17795805 -125990650 + AT_rich Low_complexity Low_complexity 1 29 0 241 308 10 29 chr12 17796373 17796477 -125989978 + CT-rich Low_complexity Low_complexity 2 103 0 1418 179 46 36 chr12 17796505 17796807 -125989648 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17796869 17797106 -125989349 + AluSx SINE Alu 2 239 -73 5599 124 3 3 chr12 17797616 17798469 -125987986 + THE1B-int LTR MaLR 728 1580 0 2257 128 19 27 chr12 17798469 17798836 -125987619 + THE1B LTR MaLR 1 364 0 184 71 71 24 chr12 17799205 17799247 -125987208 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 245 111 0 0 chr12 17799249 17799285 -125987170 + U2 snRNA snRNA 1 36 -152 327 85 0 0 chr12 17799646 17799693 -125986762 + (GA)n Simple_repeat Simple_repeat 2 48 0 182 342 129 13 chr12 17799725 17799880 -125986575 + L2 LINE L2 2312 2484 -830 2250 90 0 23 chr12 17799897 17800196 -125986259 + AluY SINE Alu 1 292 -19 209 200 0 0 chr12 17800294 17800334 -125986121 + (CAT)n Simple_repeat Simple_repeat 2 41 0 1827 77 8 0 chr12 17801388 17801647 -125984808 + THE1B-int LTR MaLR 1320 1580 0 2286 109 22 27 chr12 17801647 17802013 -125984442 + THE1B LTR MaLR 1 364 0 4541 94 12 5 chr12 17802013 17802681 -125983774 + THE1B-int LTR MaLR 1 673 -907 1303 163 32 0 chr12 17803229 17803481 -125982974 - L1PA16 LINE L1 -84 6082 5823 1160 130 0 0 chr12 17803481 17803643 -125982812 - AluSg/x SINE Alu -14 296 135 358 335 85 65 chr12 17804477 17804817 -125981638 + L2 LINE L2 2909 3255 -17 223 174 0 0 chr12 17804988 17805034 -125981421 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 183 293 107 27 chr12 17805536 17805611 -125980844 - L2 LINE L2 -460 2854 2774 2401 48 0 3 chr12 17805877 17806166 -125980289 - AluY SINE Alu -23 288 1 270 255 0 59 chr12 17806204 17806306 -125980149 + C-rich Low_complexity Low_complexity 2 97 0 267 269 0 0 chr12 17806320 17806450 -125980005 + C-rich Low_complexity Low_complexity 1 130 0 263 135 40 14 chr12 17806471 17806545 -125979910 + C-rich Low_complexity Low_complexity 4 79 0 1103 128 66 0 chr12 17806669 17806865 -125979590 - L1MA5A LINE L1 -242 6055 5847 3780 156 8 6 chr12 17806866 17807519 -125978936 + L1MA6 LINE L1 5647 6300 0 198 0 0 0 chr12 17808136 17808158 -125978297 + (A)n Simple_repeat Simple_repeat 1 22 0 2047 134 40 12 chr12 17809052 17809381 -125977074 - MER1B DNA MER1_type 0 339 2 588 267 20 0 chr12 17809703 17809853 -125976602 + MIR SINE MIR 12 164 -98 2028 206 39 15 chr12 17809854 17810374 -125976081 + L1 LINE L1 4284 4815 -1331 638 243 19 31 chr12 17812015 17812292 -125974163 - L1ME LINE L1 -690 5472 5197 3601 202 108 5 chr12 17812355 17813378 -125973077 - L1P4 LINE L1 -674 5492 4357 513 215 0 0 chr12 17813382 17813475 -125972980 + MLT1E2 LTR MaLR 526 618 -8 259 287 5 64 chr12 17813594 17813782 -125972673 + (CGGGG)n Simple_repeat Simple_repeat 3 179 0 2162 98 7 130 chr12 17814676 17815136 -125971319 - L1MA5 LINE L1 -2 6298 5896 30 27 0 0 chr12 17816099 17816136 -125970319 + GC_rich Low_complexity Low_complexity 1 37 0 401 229 11 29 chr12 17816145 17816320 -125970135 + C-rich Low_complexity Low_complexity 5 176 0 57 61 0 0 chr12 17816320 17816419 -125970036 + GC_rich Low_complexity Low_complexity 1 99 0 448 202 158 57 chr12 17816533 17816762 -125969693 + MLT1H1 LTR MaLR 339 588 -7 229 250 0 0 chr12 17816769 17816825 -125969630 + MIR SINE MIR 95 150 -112 1747 179 7 0 chr12 17817295 17817585 -125968870 - AluJb SINE Alu -20 292 1 3932 169 29 33 chr12 17819222 17820457 -125965998 - L1MA7 LINE L1 -180 6111 4876 2174 112 35 37 chr12 17820457 17820832 -125965623 - THE1C LTR MaLR -1 374 1 3932 169 29 33 chr12 17820832 17820844 -125965611 - L1MA7 LINE L1 -1415 4876 4865 210 314 42 2 chr12 17821700 17821820 -125964635 + MIR SINE MIR 28 150 -66 481 275 140 27 chr12 17821954 17822176 -125964279 + MIR SINE MIR 1 247 -15 203 283 66 0 chr12 17822392 17822498 -125963957 + L2 LINE L2 2449 2561 -753 243 88 0 0 chr12 17823514 17823548 -125962907 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 207 256 23 12 chr12 17824056 17824142 -125962313 + CT-rich Low_complexity Low_complexity 4 90 0 313 320 8 16 chr12 17824241 17824369 -125962086 + CT-rich Low_complexity Low_complexity 2 128 0 1085 274 47 40 chr12 17825265 17825697 -125960758 - MLT1K LTR MaLR -26 562 58 222 222 0 28 chr12 17826481 17826553 -125959902 + C-rich Low_complexity Low_complexity 5 74 0 376 257 114 9 chr12 17826955 17827060 -125959395 - L2 LINE L2 0 3313 3198 354 297 28 41 chr12 17827096 17827241 -125959214 + MIR SINE MIR 2 144 -118 339 169 0 0 chr12 17827371 17827442 -125959013 + C-rich Low_complexity Low_complexity 1 71 0 200 86 29 0 chr12 17827483 17827518 -125958937 + (CCCCCA)n Simple_repeat Simple_repeat 4 39 0 241 241 11 23 chr12 17827530 17827617 -125958838 + C-rich Low_complexity Low_complexity 1 86 0 291 301 0 0 chr12 17827708 17827801 -125958654 + C-rich Low_complexity Low_complexity 1 93 0 2210 135 3 35 chr12 17830208 17830556 -125955899 + MER1B DNA MER1_type 1 337 0 597 212 55 20 chr12 17830579 17830725 -125955730 - MLT1K LTR MaLR -81 507 357 225 229 0 0 chr12 17832266 17832314 -125954141 + L1ME LINE L1 5539 5586 -535 277 194 65 16 chr12 17832351 17832413 -125954042 + MLT1I LTR MaLR 345 409 0 2002 150 186 42 chr12 17832521 17832968 -125953487 - MLT2B2 LTR ERVL 0 515 5 208 381 57 6 chr12 17834048 17834224 -125952231 + L2 LINE L2 3005 3189 -124 468 213 0 0 chr12 17834547 17834674 -125951781 + C-rich Low_complexity Low_complexity 1 127 0 206 271 4 38 chr12 17834749 17835029 -125951426 + C-rich Low_complexity Low_complexity 1 270 0 218 215 7 67 chr12 17835538 17835687 -125950768 + (TGGG)n Simple_repeat Simple_repeat 3 142 0 294 158 22 29 chr12 17836015 17836154 -125950301 + G-rich Low_complexity Low_complexity 3 140 0 232 340 32 0 chr12 17838085 17838179 -125948276 - MER5A DNA MER1_type -3 186 90 35 88 0 0 chr12 17839210 17839301 -125947154 + GC_rich Low_complexity Low_complexity 1 91 0 25 0 0 0 chr12 17839313 17839338 -125947117 + GC_rich Low_complexity Low_complexity 1 25 0 267 297 68 25 chr12 17840063 17840181 -125946274 + MER117 DNA MER1_type 33 155 -42 272 337 20 0 chr12 17840538 17840636 -125945819 - L2 LINE L2 -10 3262 3163 399 284 0 49 chr12 17841075 17841258 -125945197 + CT-rich Low_complexity Low_complexity 3 176 0 21 0 0 0 chr12 17842218 17842239 -125944216 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17842944 17842968 -125943487 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 17843390 17843421 -125943034 + AT_rich Low_complexity Low_complexity 1 31 0 318 50 0 0 chr12 17846329 17846369 -125940086 + (A)n Simple_repeat Simple_repeat 1 40 0 261 231 11 22 chr12 17847707 17847798 -125938657 + (TA)n Simple_repeat Simple_repeat 2 91 0 319 255 0 20 chr12 17847992 17848090 -125938365 - MIR3 SINE MIR -23 185 90 21 0 0 0 chr12 17849873 17849894 -125936561 + AT_rich Low_complexity Low_complexity 1 21 0 180 228 0 0 chr12 17852576 17852633 -125933822 + CT-rich Low_complexity Low_complexity 3 59 0 262 180 0 49 chr12 17854156 17854217 -125932238 + MER4-int LTR ERV1 1101 1158 -5440 356 71 18 0 chr12 17854741 17854797 -125931658 + (GA)n Simple_repeat Simple_repeat 1 57 0 25 0 0 0 chr12 17855950 17855975 -125930480 + AT_rich Low_complexity Low_complexity 1 25 0 232 333 63 40 chr12 17859968 17860094 -125926361 + L2 LINE L2 3136 3264 -8 561 167 8 56 chr12 17860232 17860358 -125926097 + AluSg/x SINE Alu 137 256 -56 192 40 0 0 chr12 17860416 17860441 -125926014 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 211 191 106 0 chr12 17860573 17860620 -125925835 + L2 LINE L2 3218 3269 -3 315 358 89 57 chr12 17862068 17862719 -125923736 + HAL1b LINE L1 26 697 -651 1475 188 117 0 chr12 17862959 17863267 -125923188 - MER2 DNA MER2_type 0 344 1 199 365 113 25 chr12 17863341 17863500 -125922955 - MIR SINE MIR -68 194 22 1251 234 8 86 chr12 17863845 17864322 -125922133 - L1MD3 LINE L1 0 8037 7613 200 170 38 19 chr12 17864644 17864697 -125921758 + GA-rich Low_complexity Low_complexity 2 55 0 249 307 73 49 chr12 17865911 17866118 -125920337 - MLT1G1 LTR MaLR -313 229 20 197 358 42 17 chr12 17866469 17866589 -125919866 + MIR3 SINE MIR 69 191 -17 699 258 58 11 chr12 17867644 17867834 -125918621 + MER3 DNA MER1_type 2 200 -9 223 336 61 30 chr12 17868106 17868237 -125918218 + L2 LINE L2 3179 3313 0 236 157 0 78 chr12 17868970 17869021 -125917434 + MIR3 SINE MIR 154 200 -8 462 289 103 47 chr12 17870254 17870486 -125915969 - MIR SINE MIR -5 257 13 28 61 0 0 chr12 17871578 17871627 -125914828 + AT_rich Low_complexity Low_complexity 1 49 0 1183 179 0 0 chr12 17871628 17871829 -125914626 - AluJo SINE Alu -27 285 85 180 183 56 99 chr12 17871964 17872035 -125914420 + MIR SINE MIR 145 212 -50 27 29 0 0 chr12 17873010 17873044 -125913411 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr12 17873376 17873426 -125913029 + AT_rich Low_complexity Low_complexity 1 50 0 2219 75 0 0 chr12 17873453 17873751 -125912704 + AluY SINE Alu 15 312 0 1548 142 34 4 chr12 17874571 17874804 -125911651 + AluSx SINE Alu 3 242 -70 654 37 0 0 chr12 17874845 17874926 -125911529 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 1619 174 0 0 chr12 17875158 17875434 -125911021 + AluSx SINE Alu 1 276 -36 183 80 0 0 chr12 17875436 17875461 -125910994 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 211 385 68 7 chr12 17875889 17876037 -125910418 - MIR SINE MIR -55 207 51 321 89 0 0 chr12 17876897 17876942 -125909513 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2178 132 0 0 chr12 17877091 17877401 -125909054 - AluSx SINE Alu -2 310 1 504 85 51 0 chr12 17877940 17878058 -125908397 + (TA)n Simple_repeat Simple_repeat 1 124 0 1493 223 7 3 chr12 17878058 17878350 -125908105 - AluJo SINE Alu -19 293 1 23 33 0 0 chr12 17878896 17878926 -125907529 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 17879723 17879744 -125906711 + AT_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr12 17880395 17880452 -125906003 + AT_rich Low_complexity Low_complexity 1 57 0 389 276 20 0 chr12 17881437 17881535 -125904920 - MER58B DNA MER1_type -4 337 238 230 306 108 13 chr12 17881648 17881805 -125904650 + MIR3 SINE MIR 23 194 -14 231 248 26 34 chr12 17881829 17881946 -125904509 - L1MC4 LINE L1 -1314 6728 6613 197 171 45 0 chr12 17881953 17882041 -125904414 + (TA)n Simple_repeat Simple_repeat 1 92 0 299 202 9 0 chr12 17882069 17882178 -125904277 + (TA)n Simple_repeat Simple_repeat 1 110 0 270 148 0 131 chr12 17882178 17882239 -125904216 - AluJo SINE Alu -15 287 235 821 198 0 70 chr12 17882239 17882411 -125904044 - AluJo SINE Alu -152 160 1 1921 98 83 14 chr12 17883219 17883496 -125902959 + AluSq SINE Alu 1 296 -17 2067 92 20 26 chr12 17885032 17885338 -125901117 - AluSq SINE Alu -9 304 1 2519 83 11 51 chr12 17885378 17885586 -125900869 - THE1B LTR MaLR -4 360 172 2372 80 0 3 chr12 17885586 17885898 -125900557 + AluY SINE Alu 1 311 0 2519 83 11 51 chr12 17885898 17886064 -125900391 - THE1B LTR MaLR -192 172 1 9547 105 35 60 chr12 17886064 17886142 -125900313 - THE1B-int LTR MaLR 0 1580 1502 2123 101 7 10 chr12 17886142 17886440 -125900015 - AluSg SINE Alu -13 297 1 9547 105 35 60 chr12 17886440 17887981 -125898474 - THE1B-int LTR MaLR -78 1502 1 1341 140 103 120 chr12 17887981 17888249 -125898206 - THE1B LTR MaLR 0 364 176 1873 144 3 17 chr12 17888249 17888541 -125897914 - AluSx SINE Alu -24 288 1 1341 140 103 120 chr12 17888541 17888715 -125897740 - THE1B LTR MaLR -188 176 1 819 203 28 6 chr12 17889311 17889488 -125896967 - MER20 DNA MER1_type -2 217 37 190 395 0 0 chr12 17889920 17889996 -125896459 + L2 LINE L2 3007 3082 -190 370 316 52 16 chr12 17890067 17890260 -125896195 - HAL1b LINE L1 -1063 285 86 25 0 0 0 chr12 17890489 17890514 -125895941 + AT_rich Low_complexity Low_complexity 1 25 0 237 297 0 14 chr12 17890695 17890769 -125895686 + T-rich Low_complexity Low_complexity 2 74 0 1001 225 59 74 chr12 17891284 17891675 -125894780 - L1ME1 LINE L1 0 6178 5790 2081 276 54 24 chr12 17891742 17892495 -125893960 - L1MEc LINE L1 -5528 868 93 302 257 14 0 chr12 17892858 17892932 -125893523 + GA-rich Low_complexity Low_complexity 4 78 0 2215 121 0 6 chr12 17893368 17893681 -125892774 - AluSq SINE Alu 0 313 3 806 162 7 0 chr12 17894197 17894333 -125892122 - MLT1D LTR MaLR 0 505 369 4152 276 47 35 chr12 17894340 17895071 -125891384 + L1MC2 LINE L1 1535 2256 -3959 351 0 0 0 chr12 17895071 17895110 -125891345 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1638 168 11 4 chr12 17895113 17895393 -125891062 - AluSx SINE Alu -30 282 1 4152 276 47 35 chr12 17895393 17895474 -125890981 + L1MC2 LINE L1 2257 2336 -3879 1731 78 42 95 chr12 17895474 17895757 -125890698 + AluY SINE Alu 1 268 -43 210 37 0 0 chr12 17895761 17895788 -125890667 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4152 276 47 35 chr12 17895788 17897904 -125888551 + L1MC2 LINE L1 2338 4501 -1714 2618 169 7 2 chr12 17897904 17898330 -125888125 - MSTA LTR MaLR 0 428 1 4152 276 47 35 chr12 17898330 17898497 -125887958 + L1MC2 LINE L1 4501 4665 -1550 * 5041 128 27 23 chr12 17898492 17899333 -125887122 - L1PA13 LINE L1 -1 6162 5318 17810 179 18 7 chr12 17899336 17902239 -125884216 - L1PA13 LINE L1 -11 7590 4721 2023 128 75 20 chr12 17902239 17902584 -125883871 - THE1B LTR MaLR 0 364 1 17810 179 18 7 chr12 17902584 17905371 -125881084 - L1PA13 LINE L1 -2880 4721 1832 477 193 29 43 chr12 17905371 17905511 -125880944 + L1MC2 LINE L1 4649 4786 -1429 2142 124 0 0 chr12 17905512 17905803 -125880652 + AluSc SINE Alu 1 291 -18 2685 208 40 13 chr12 17905808 17906733 -125879722 + L1MEc LINE L1 4751 5698 -753 521 259 0 7 chr12 17906736 17906875 -125879580 + L1MC2 LINE L1 4781 4918 -1297 3052 204 35 11 chr12 17906882 17907577 -125878878 + L1MC2 LINE L1 5701 6411 -2 527 239 62 8 chr12 17907579 17907709 -125878746 - MLT1D LTR MaLR -121 384 248 778 53 53 24 chr12 17908853 17909022 -125877433 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 1836 104 4 0 chr12 17909653 17909894 -125876561 + AluSp SINE Alu 1 242 -71 1770 147 0 18 chr12 17909896 17910181 -125876274 + AluSx SINE Alu 26 305 -7 637 310 67 64 chr12 17910546 17910875 -125875580 - L2 LINE L2 -411 2903 2574 567 224 32 78 chr12 17910973 17911192 -125875263 + L1MC5 LINE L1 7297 7505 -456 501 261 59 0 chr12 17911192 17911311 -125875144 + MER20 DNA MER1_type 1 126 -93 252 200 92 15 chr12 17911369 17911434 -125875021 + MER20 DNA MER1_type 146 215 -4 953 229 127 14 chr12 17911436 17911799 -125874656 + L1MC5 LINE L1 7498 7901 -60 21 36 0 0 chr12 17912003 17912031 -125874424 + AT_rich Low_complexity Low_complexity 1 28 0 228 355 26 16 chr12 17912133 17912322 -125874133 - L1ME LINE L1 -454 5667 5477 21 0 0 0 chr12 17912357 17912378 -125874077 + AT_rich Low_complexity Low_complexity 1 21 0 1285 147 14 14 chr12 17912454 17912665 -125873790 + AluSg/x SINE Alu 75 314 0 207 0 69 0 chr12 17912665 17912694 -125873761 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 238 321 47 9 chr12 17912717 17912929 -125873526 - L1ME LINE L1 -1549 4597 4378 21 0 0 0 chr12 17916120 17916141 -125870314 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr12 17917547 17917596 -125868859 + AT_rich Low_complexity Low_complexity 1 49 0 377 323 38 15 chr12 17917932 17918065 -125868390 - L3b LINE CR1 -23 1560 1425 379 271 151 55 chr12 17918385 17918603 -125867852 - Charlie8 DNA MER1_type -415 2002 1764 35 54 0 0 chr12 17918897 17918953 -125867502 + AT_rich Low_complexity Low_complexity 1 56 0 3217 286 122 37 chr12 17919113 17920866 -125865589 - Charlie8 DNA MER1_type -341 2076 176 252 0 0 0 chr12 17921006 17921034 -125865421 + (T)n Simple_repeat Simple_repeat 1 28 0 332 220 110 9 chr12 17921251 17921360 -125865095 + MIR SINE MIR 86 205 -57 3786 157 16 3 chr12 17921391 17922060 -125864395 - L1MC1 LINE L1 -6 6327 5650 2450 251 12 25 chr12 17922060 17922812 -125863643 - L1MC1 LINE L1 -985 5161 4420 21 0 0 0 chr12 17922847 17922868 -125863587 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 17923018 17923064 -125863391 + AT_rich Low_complexity Low_complexity 1 46 0 402 329 50 6 chr12 17923090 17923251 -125863204 + MIR SINE MIR 23 190 -72 412 255 97 36 chr12 17923363 17923610 -125862845 - L1ME4a LINE L1 -5 6116 5855 560 128 0 0 chr12 17924047 17924133 -125862322 + L1MC1 LINE L1 5894 5979 -354 646 268 169 6 chr12 17925849 17926032 -125860423 - MIR SINE MIR 0 262 50 22 0 0 0 chr12 17927592 17927614 -125858841 + AT_rich Low_complexity Low_complexity 1 22 0 1467 158 142 3 chr12 17927860 17928177 -125858278 - MER46B DNA MER2_type 0 236 1 1384 120 33 49 chr12 17928183 17928432 -125858023 + L1MC1 LINE L1 5935 6178 -155 414 127 89 0 chr12 17928445 17928524 -125857931 + L1MC1 LINE L1 6231 6316 -17 3070 273 78 102 chr12 17928545 17928647 -125857808 + L2 LINE L2 1360 1463 -1851 1722 199 64 0 chr12 17928647 17928989 -125857466 + MLT1A1 LTR MaLR 1 364 -1 3070 273 78 102 chr12 17928989 17929703 -125856752 + L2 LINE L2 1463 2192 -1122 597 219 9 0 chr12 17929703 17929808 -125856647 - FLAM_A SINE Alu -29 113 8 3070 273 78 102 chr12 17929808 17930521 -125855934 + L2 LINE L2 2192 2955 -359 24 53 0 0 chr12 17931687 17931725 -125854730 + AT_rich Low_complexity Low_complexity 1 38 0 214 238 0 0 chr12 17932011 17932053 -125854402 + CT-rich Low_complexity Low_complexity 3 44 0 205 283 0 0 chr12 17932829 17932875 -125853580 - L2 LINE L2 -6 3307 3262 1780 148 3 40 chr12 17932950 17933254 -125853201 + AluJb SINE Alu 1 293 -19 26 0 0 0 chr12 17933258 17933284 -125853171 + AT_rich Low_complexity Low_complexity 1 26 0 2029 208 0 3 chr12 17933289 17933655 -125852800 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr12 17935163 17935193 -125851262 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 17935234 17935257 -125851198 + AT_rich Low_complexity Low_complexity 1 23 0 238 275 114 12 chr12 17935491 17935590 -125850865 + MIR SINE MIR 45 153 -55 411 65 26 39 chr12 17935814 17935891 -125850564 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 212 129 0 0 chr12 17935891 17935922 -125850533 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1942 161 0 0 chr12 17935926 17936224 -125850231 - AluSx SINE Alu -14 298 1 213 132 0 0 chr12 17936671 17936709 -125849746 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 976 253 64 4 chr12 17937029 17937262 -125849193 - MIR SINE MIR -5 257 11 407 269 70 108 chr12 17937631 17938047 -125848408 + MLT1K LTR MaLR 69 468 -120 552 322 99 61 chr12 17938061 17938486 -125847969 + L2 LINE L2 2873 3313 0 8763 202 28 33 chr12 17938687 17941508 -125844947 + L1MA6 LINE L1 3371 6173 -127 535 187 8 8 chr12 17941515 17941638 -125844817 + GA-rich Low_complexity Low_complexity 2 124 0 784 152 0 0 chr12 17941667 17941799 -125844656 + L1MA9 LINE L1 6179 6310 -2 22 0 0 0 chr12 17941827 17941849 -125844606 + AT_rich Low_complexity Low_complexity 1 22 0 1823 201 31 10 chr12 17942033 17942421 -125844034 + MSTD LTR MaLR 1 396 0 5690 242 114 26 chr12 17942423 17944013 -125842442 + MSTD-int LTR MaLR 2 1731 -4 2007 208 8 8 chr12 17944017 17944411 -125842044 + MSTD LTR MaLR 1 394 -2 199 360 142 40 chr12 17944747 17945227 -125841228 - L2 LINE L2 -565 2749 2221 1316 163 51 12 chr12 17945243 17945500 -125840955 - ORSL DNA AcHobo 0 275 9 2220 88 10 0 chr12 17946902 17947198 -125839257 - AluSq SINE Alu -14 299 1 191 350 169 38 chr12 17947631 17948325 -125838130 - L2 LINE L2 -1215 2099 1315 834 258 65 9 chr12 17948714 17948943 -125837512 - MIR SINE MIR 0 262 21 28 29 0 0 chr12 17950365 17950400 -125836055 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 17950593 17950617 -125835838 + AT_rich Low_complexity Low_complexity 1 24 0 266 266 117 8 chr12 17950620 17950748 -125835707 - L1ME4a LINE L1 -3 6118 5977 1978 149 3 0 chr12 17950996 17951292 -125835163 + AluSq SINE Alu 3 299 -14 548 306 43 47 chr12 17951308 17951566 -125834889 - MLT1I LTR MaLR -82 327 71 430 139 0 0 chr12 17951674 17951746 -125834709 + L1MA4A LINE L1 6209 6280 -23 24 32 0 0 chr12 17951842 17951873 -125834582 + AT_rich Low_complexity Low_complexity 1 31 0 307 359 75 46 chr12 17952096 17952587 -125833868 + L2 LINE L2 2722 3224 -48 22 0 0 0 chr12 17953194 17953216 -125833239 + AT_rich Low_complexity Low_complexity 1 22 0 15253 28 3 2 chr12 17953227 17955079 -125831376 - L1PA2 LINE L1 -1520 4626 2772 7843 13 0 0 chr12 17955079 17956631 -125829824 + L1PA2 LINE L1 4604 6155 0 25 51 0 0 chr12 17956910 17956949 -125829506 + AT_rich Low_complexity Low_complexity 1 39 0 414 252 42 17 chr12 17958174 17958293 -125828162 - MIR SINE MIR -94 168 47 400 351 109 9 chr12 17958570 17958803 -125827652 + MIR SINE MIR 3 256 -6 2314 40 4 0 chr12 17958940 17959251 -125827204 - AluY SINE Alu 0 320 9 229 342 0 13 chr12 17959577 17959653 -125826802 + L2 LINE L2 2625 2699 -615 217 250 0 0 chr12 17959830 17959878 -125826577 + L2 LINE L2 3261 3308 -5 2257 88 0 0 chr12 17960263 17960560 -125825895 - AluY SINE Alu -10 301 5 589 306 58 21 chr12 17961562 17961804 -125824651 - MIR SINE MIR 0 262 12 565 283 64 60 chr12 17966137 17966370 -125820085 - MIR SINE MIR 0 262 29 4014 168 62 50 chr12 17966890 17967403 -125819052 + MER4D LTR ERV1 1 530 -373 2087 109 0 82 chr12 17967403 17967743 -125818712 + AluSx SINE Alu 1 312 0 4014 168 62 50 chr12 17967743 17968122 -125818333 + MER4D LTR ERV1 530 903 0 250 325 153 16 chr12 17968317 17968572 -125817883 - L2 LINE L2 -779 2535 2246 759 333 125 15 chr12 17968814 17969730 -125816725 - L2 LINE L2 -23 3290 2277 515 16 16 0 chr12 17969840 17969904 -125816551 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 191 288 61 0 chr12 17970579 17970645 -125815810 - L2 LINE L2 -959 2355 2286 197 328 69 0 chr12 17971387 17971445 -125815010 + L2 LINE L2 3194 3255 -17 183 148 0 0 chr12 17971806 17971833 -125814622 + L2 LINE L2 3267 3293 -20 834 39 0 0 chr12 17972396 17972498 -125813957 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 347 290 60 10 chr12 17973053 17973153 -125813302 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 17973271 17973624 -125812831 + L2 LINE L2 2955 3313 0 21 0 0 0 chr12 17974251 17974272 -125812183 + AT_rich Low_complexity Low_complexity 1 21 0 665 289 27 51 chr12 17974800 17975056 -125811399 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 17975345 17975388 -125811067 + A-rich Low_complexity Low_complexity 2 45 0 1985 115 0 4 chr12 17975402 17975680 -125810775 - AluSx SINE Alu -25 287 11 2194 202 131 24 chr12 17976376 17977080 -125809375 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 17977263 17977287 -125809168 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 17977430 17977457 -125808998 + (CA)n Simple_repeat Simple_repeat 2 28 0 826 169 49 0 chr12 17978080 17978222 -125808233 + MSTB1 LTR MaLR 4 152 -274 1412 158 54 0 chr12 17978520 17978761 -125807694 + MSTB1 LTR MaLR 157 410 -22 217 188 21 42 chr12 17979051 17979099 -125807356 + MIR SINE MIR 110 151 -57 213 302 143 8 chr12 17979309 17979435 -125807020 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 17979586 17979639 -125806816 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2235 48 0 0 chr12 17979835 17980106 -125806349 - L1PA5 LINE L1 -498 5656 5386 3987 47 0 2 chr12 17980106 17980597 -125805858 + L1PA5 LINE L1 5661 6151 -3 217 193 52 46 chr12 17981485 17981587 -125804868 - L2 LINE L2 -274 3039 2937 194 298 0 0 chr12 17981702 17981749 -125804706 + L2 LINE L2 3234 3280 -33 571 332 45 4 chr12 17981762 17982009 -125804446 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 17982083 17982148 -125804307 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 17982276 17982786 -125803669 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 17983148 17983500 -125802955 - L2 LINE L2 -613 2701 2289 273 197 0 0 chr12 17983506 17983572 -125802883 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 17983811 17983908 -125802547 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 17987096 17987228 -125799227 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 17987610 17987648 -125798807 + (T)n Simple_repeat Simple_repeat 1 38 0 967 301 91 9 chr12 17992581 17993023 -125793432 - L2 LINE L2 0 3313 2836 21 36 0 0 chr12 17994690 17994718 -125791737 + AT_rich Low_complexity Low_complexity 1 28 0 195 340 58 0 chr12 17995105 17995208 -125791247 + MIR SINE MIR 39 147 -115 183 305 116 66 chr12 17995309 17995568 -125790887 + L3b LINE CR1 1163 1434 -149 28 71 0 0 chr12 17995933 17995989 -125790466 + AT_rich Low_complexity Low_complexity 1 56 0 431 286 101 30 chr12 17999025 17999193 -125787262 - Charlie8 DNA MER1_type -2162 255 76 241 323 74 117 chr12 17999698 18000048 -125786407 + L2 LINE L2 254 588 -2726 419 360 118 28 chr12 18000585 18001125 -125785330 + L2 LINE L2 1465 2104 -1210 2241 103 3 0 chr12 18001125 18001426 -125785029 - AluSx SINE Alu -10 302 1 419 360 118 28 chr12 18001426 18001701 -125784754 + L2 LINE L2 2104 2353 -961 475 328 86 14 chr12 18001741 18002253 -125784202 + L1M4 LINE L1 3666 4214 -1932 401 306 0 9 chr12 18002619 18002730 -125783725 - L2 LINE L2 -14 3299 3190 505 282 87 29 chr12 18002763 18002969 -125783486 - MIR SINE MIR -44 218 1 363 282 105 24 chr12 18003359 18003568 -125782887 - L1ME4a LINE L1 -17 6104 5879 364 290 101 32 chr12 18003604 18003924 -125782531 - L1MC4 LINE L1 -293 7749 7312 759 160 0 15 chr12 18003927 18004058 -125782397 + FLAM_A SINE Alu 1 129 -4 230 321 89 12 chr12 18004108 18004276 -125782179 - L1MC4a LINE L1 -458 7350 7170 269 268 89 48 chr12 18004306 18004474 -125781981 - L1MC5 LINE L1 -738 7223 7049 2095 106 0 0 chr12 18005332 18005656 -125780799 - AluSx SINE Alu 0 324 1 464 156 0 21 chr12 18006203 18006299 -125780156 - MER53 DNA DNA -2 187 94 194 178 44 0 chr12 18006418 18006463 -125779992 - L2 LINE L2 -551 2763 2717 252 266 63 91 chr12 18006540 18006683 -125779772 + L2 LINE L2 3159 3297 -16 756 242 41 5 chr12 18008516 18008710 -125777745 + MIR SINE MIR 61 261 -1 264 295 58 98 chr12 18009248 18009421 -125777034 + MIR SINE MIR 21 143 -65 206 102 85 0 chr12 18011466 18011525 -125774930 + (TA)n Simple_repeat Simple_repeat 1 64 0 198 0 0 0 chr12 18011830 18011852 -125774603 + (A)n Simple_repeat Simple_repeat 1 22 0 334 270 63 8 chr12 18012563 18012689 -125773766 + MER94 DNA DNA 1 133 -1 21 0 0 0 chr12 18013094 18013115 -125773340 + AT_rich Low_complexity Low_complexity 1 21 0 720 12 0 0 chr12 18013149 18013233 -125773222 - L1PA3 LINE L1 -4 6151 6068 210 333 56 0 chr12 18014905 18014977 -125771478 + MIR3 SINE MIR 14 89 -119 1145 177 67 41 chr12 18015402 18015718 -125770737 - MER33 DNA MER1_type 0 324 1 1679 112 0 5 chr12 18016963 18017218 -125769237 - AluSq SINE Alu 0 315 62 4175 132 24 28 chr12 18017637 18018151 -125768304 - L1MA6 LINE L1 -5 6295 5784 513 0 0 0 chr12 18018151 18018208 -125768247 + (TA)n Simple_repeat Simple_repeat 2 58 0 4175 132 24 28 chr12 18018208 18018476 -125767979 - L1MA6 LINE L1 -516 5784 5516 1386 219 4 14 chr12 18019105 18019383 -125767072 + AluJo SINE Alu 3 277 -35 22 0 0 0 chr12 18022108 18022130 -125764325 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 18024162 18024198 -125762257 + AT_rich Low_complexity Low_complexity 1 36 0 1734 150 7 36 chr12 18024212 18024519 -125761936 - AluJo SINE Alu -10 302 5 588 296 6 45 chr12 18024644 18024820 -125761635 + MIR3 SINE MIR 15 183 -25 454 284 103 58 chr12 18025135 18025378 -125761077 + MIR SINE MIR 5 258 -4 233 261 53 63 chr12 18025832 18026131 -125760324 - L1ME4a LINE L1 -4 6117 5822 379 342 41 22 chr12 18026281 18026486 -125759969 + MIR SINE MIR 16 218 -44 376 296 103 65 chr12 18026666 18026957 -125759498 - L1ME4a LINE L1 -504 5617 5316 188 327 45 112 chr12 18028094 18028541 -125757914 - L2 LINE L2 -44 3228 2812 741 230 40 50 chr12 18029056 18029230 -125757225 - MIR SINE MIR -36 226 53 1582 54 0 27 chr12 18029230 18029454 -125757001 + AluY SINE Alu 1 218 -93 741 230 40 50 chr12 18029454 18029479 -125756976 - MIR SINE MIR -209 53 29 299 348 64 42 chr12 18030878 18031114 -125755341 + MIR SINE MIR 19 259 -3 235 217 0 0 chr12 18036538 18036584 -125749871 - L2 LINE L2 -2 3311 3266 396 262 252 0 chr12 18038047 18038253 -125748202 - MIR SINE MIR 0 262 5 22 70 0 0 chr12 18039141 18039184 -125747271 + AT_rich Low_complexity Low_complexity 1 43 0 387 0 0 0 chr12 18039927 18039970 -125746485 + (TG)n Simple_repeat Simple_repeat 2 44 0 453 308 55 28 chr12 18040431 18040613 -125745842 + MIR SINE MIR 48 234 -28 286 317 113 68 chr12 18041006 18041271 -125745184 - L2 LINE L2 -6 3266 2990 235 250 0 17 chr12 18041854 18041914 -125744541 + MLT1J LTR MaLR 2 60 -451 1789 139 73 0 chr12 18043255 18043543 -125742912 - AluSx SINE Alu -3 309 1 862 199 0 0 chr12 18043766 18043917 -125742538 + AluJb SINE Alu 148 298 -14 24 32 0 0 chr12 18044919 18044950 -125741505 + AT_rich Low_complexity Low_complexity 1 31 0 2142 129 8 36 chr12 18045048 18045284 -125741171 + THE1A LTR MaLR 1 225 -130 2502 66 0 0 chr12 18045284 18045586 -125740869 + AluY SINE Alu 1 302 -9 2142 129 8 36 chr12 18045586 18045714 -125740741 + THE1A LTR MaLR 225 355 0 11336 104 7 0 chr12 18045714 18047283 -125739172 + THE1A-int LTR MaLR 1 1580 0 2272 114 17 8 chr12 18047283 18047635 -125738820 + THE1A LTR MaLR 1 355 0 381 22 0 0 chr12 18048073 18048119 -125738336 + (CA)n Simple_repeat Simple_repeat 2 47 0 459 299 142 18 chr12 18048162 18048443 -125738012 - L3b LINE CR1 -166 1417 1102 419 368 54 28 chr12 18050082 18050493 -125735962 + L2 LINE L2 2753 3165 -107 767 115 33 8 chr12 18052565 18052687 -125733768 - FRAM SINE Alu -22 154 30 234 0 0 0 chr12 18053009 18053035 -125733420 + (T)n Simple_repeat Simple_repeat 1 26 0 268 366 53 68 chr12 18054538 18054803 -125731652 - L2 LINE L2 -4 3268 3008 211 324 83 66 chr12 18056146 18056322 -125730133 + MIR SINE MIR 16 192 -70 22 0 0 0 chr12 18056955 18056977 -125729478 + AT_rich Low_complexity Low_complexity 1 22 0 260 306 105 16 chr12 18057795 18057919 -125728536 + MIR3 SINE MIR 11 145 -63 7778 12 7 0 chr12 18057923 18059043 -125727412 + L1PA3 LINE L1 5030 6155 0 261 319 14 0 chr12 18059189 18059258 -125727197 + MIR SINE MIR 122 191 -71 490 287 120 35 chr12 18060217 18060534 -125725921 + MARNA DNA Mariner 10 353 -233 324 325 79 16 chr12 18060833 18060959 -125725496 - MIR SINE MIR -57 151 18 188 366 98 22 chr12 18063679 18063862 -125722593 + L2 LINE L2 2990 3186 -86 246 325 72 0 chr12 18063972 18064055 -125722400 + MIR3 SINE MIR 103 191 -17 450 291 146 28 chr12 18064939 18065152 -125721303 - MIR SINE MIR -24 238 1 819 343 89 28 chr12 18065544 18066109 -125720346 - L2 LINE L2 -4 3309 2717 247 191 0 0 chr12 18066563 18066605 -125719850 - MSTD LTR MaLR 0 396 355 1783 200 96 3 chr12 18066616 18066971 -125719484 - MSTD LTR MaLR -8 388 1 354 350 38 6 chr12 18067585 18067745 -125718710 - MIR3 SINE MIR -12 196 32 1952 110 76 0 chr12 18068531 18068822 -125717633 - AluSq SINE Alu 0 313 1 218 200 0 0 chr12 18071039 18071079 -125715376 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 71 0 0 chr12 18073053 18073095 -125713360 + AT_rich Low_complexity Low_complexity 1 42 0 198 230 23 11 chr12 18073833 18073920 -125712535 + CT-rich Low_complexity Low_complexity 1 88 0 397 291 168 17 chr12 18074114 18074293 -125712162 - MIR SINE MIR 0 262 57 191 361 12 36 chr12 18075661 18075744 -125710711 - L2 LINE L2 -5 3267 3187 225 65 0 0 chr12 18075954 18075985 -125710470 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 215 423 39 0 chr12 18075993 18076097 -125710358 - L2 LINE L2 -19 3253 3146 2134 120 141 8 chr12 18076296 18076664 -125709791 + MSTA LTR MaLR 1 417 -11 276 328 93 98 chr12 18076881 18077332 -125709123 + L2 LINE L2 2816 3264 -8 498 243 100 0 chr12 18077470 18077610 -125708845 - MER58A DNA MER1_type 0 156 3 1649 226 80 23 chr12 18077683 18078120 -125708335 + LTR40b LTR ERVL 1 462 0 669 292 60 17 chr12 18078153 18078386 -125708069 + MER102b DNA MER1_type 96 338 -3 2611 190 0 30 chr12 18080105 18080604 -125705851 - MER66B LTR ERV1 0 486 3 21 36 0 0 chr12 18081667 18081695 -125704760 + AT_rich Low_complexity Low_complexity 1 28 0 29 78 0 0 chr12 18082254 18082318 -125704137 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr12 18082405 18082434 -125704021 + AT_rich Low_complexity Low_complexity 1 29 0 2072 112 26 10 chr12 18083065 18083368 -125703087 - AluSc SINE Alu -1 308 1 230 236 36 0 chr12 18083479 18083534 -125702921 - L2 LINE L2 -3 3310 3254 318 250 107 79 chr12 18086276 18086416 -125700039 + MER5A DNA MER1_type 43 186 -3 1443 134 50 23 chr12 18087449 18087710 -125698745 + L1PA16 LINE L1 5890 6157 -9 476 303 51 63 chr12 18087798 18088211 -125698244 - L1ME2 LINE L1 -286 5878 5471 1652 174 22 6 chr12 18088710 18089032 -125697423 - L1PA16 LINE L1 -2 6164 5838 266 333 53 38 chr12 18089094 18089226 -125697229 - MIR SINE MIR -103 159 26 690 240 63 0 chr12 18090686 18090861 -125695594 - MER5A DNA MER1_type 0 189 4 417 342 33 41 chr12 18091012 18091255 -125695200 - MLT1K LTR MaLR -211 377 137 230 347 89 8 chr12 18092667 18092791 -125693664 - MIR3 SINE MIR -73 135 2 350 339 144 6 chr12 18093416 18093596 -125692859 + MIR SINE MIR 31 235 -27 1022 261 28 47 chr12 18093664 18093908 -125692547 - MLT1I LTR MaLR 0 409 171 1761 185 3 3 chr12 18093908 18094211 -125692244 - AluJo SINE Alu -9 303 1 1022 261 28 47 chr12 18094211 18094284 -125692171 - MLT1I LTR MaLR -238 171 98 232 293 40 0 chr12 18094480 18094555 -125691900 + MIR SINE MIR 61 138 -124 1391 208 7 18 chr12 18095040 18095364 -125691091 - AluJo SINE Alu 0 323 3 30 77 0 0 chr12 18095474 18095539 -125690916 + AT_rich Low_complexity Low_complexity 1 65 0 271 334 142 22 chr12 18095628 18095938 -125690517 - L2 LINE L2 -213 3059 2727 231 301 44 48 chr12 18095953 18096159 -125690296 - HAL1 LINE L1 0 2507 2303 1310 121 5 47 chr12 18096320 18096535 -125689920 + AluJo SINE Alu 84 289 -23 335 313 79 51 chr12 18096680 18096894 -125689561 - L1MEd LINE L1 -2421 3708 3489 849 335 76 16 chr12 18097821 18098257 -125688198 - L2 LINE L2 -2 3311 2850 370 286 41 23 chr12 18098270 18098536 -125687919 - L1MEd LINE L1 -2996 3133 2863 326 254 15 46 chr12 18098570 18098700 -125687755 + L1MEd LINE L1 1129 1254 -4865 391 244 73 24 chr12 18098761 18098884 -125687571 + MER3 DNA MER1_type 74 202 -7 594 313 60 30 chr12 18098894 18099258 -125687197 - L2 LINE L2 -1147 2167 1793 1884 155 118 45 chr12 18099355 18099754 -125686701 + MSTA LTR MaLR 1 428 0 230 56 28 0 chr12 18099760 18099796 -125686659 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 734 282 73 63 chr12 18100145 18100666 -125685789 - L1MEd LINE L1 -3311 2818 2293 2137 122 0 0 chr12 18101545 18101841 -125684614 - AluSg SINE Alu -14 296 1 274 275 150 6 chr12 18101958 18102125 -125684330 - L1MEd LINE L1 -4641 1669 1479 759 289 48 29 chr12 18102166 18102690 -125683765 - L1MEd LINE L1 -4866 1253 852 410 312 40 40 chr12 18102850 18103049 -125683406 - L1MEd LINE L1 -5472 647 449 809 201 21 107 chr12 18103144 18103258 -125683197 + MER58C DNA MER1_type 2 124 -2296 189 74 0 0 chr12 18103258 18103285 -125683170 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 633 183 26 0 chr12 18103288 18103403 -125683052 - FLAM_C SINE Alu -15 118 1 809 201 21 107 chr12 18103403 18103518 -125682937 + MER58C DNA MER1_type 126 215 0 1303 198 26 40 chr12 18103579 18103751 -125682704 - L1M4 LINE L1 -810 5336 5170 2275 111 0 3 chr12 18103751 18104049 -125682406 + AluSc SINE Alu 1 297 -12 1303 198 26 40 chr12 18104049 18104225 -125682230 - L1M4 LINE L1 -976 5170 4993 448 193 0 0 chr12 18104276 18104359 -125682096 + L1MC1 LINE L1 6236 6318 -15 1752 175 0 7 chr12 18104359 18104656 -125681799 + AluJo SINE Alu 4 298 -14 2495 50 7 0 chr12 18104658 18104956 -125681499 + AluY SINE Alu 1 300 -11 1704 149 56 83 chr12 18104987 18105383 -125681072 + L1MB5 LINE L1 5782 6166 -8 22 70 0 0 chr12 18105492 18105535 -125680920 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 18105627 18105655 -125680800 + AT_rich Low_complexity Low_complexity 1 28 0 2267 108 0 0 chr12 18105864 18106160 -125680295 + AluSc SINE Alu 1 296 -13 285 301 62 18 chr12 18107639 18107752 -125678703 + L2 LINE L2 3150 3267 -5 199 254 34 51 chr12 18108330 18108389 -125678066 + L2 LINE L2 3246 3303 -10 1005 181 0 17 chr12 18110280 18110457 -125675998 - AluJb SINE Alu -2 310 137 734 200 45 73 chr12 18110814 18111034 -125675421 - MER20 DNA MER1_type -2 217 4 294 73 0 0 chr12 18112245 18112286 -125674169 + (TG)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr12 18112776 18112798 -125673657 + AT_rich Low_complexity Low_complexity 1 22 0 21 95 0 0 chr12 18113383 18113446 -125673009 + AT_rich Low_complexity Low_complexity 1 63 0 2205 119 0 16 chr12 18114703 18115013 -125671442 + AluSx SINE Alu 1 305 -7 445 207 40 87 chr12 18115312 18115462 -125670993 - MLT1J LTR MaLR -365 146 4 196 225 0 0 chr12 18115487 18115527 -125670928 - L2 LINE L2 -11 3302 3263 379 214 71 79 chr12 18117910 18118036 -125668419 + MLT1J2 LTR MaLR 26 150 -259 2466 121 162 22 chr12 18118342 18118806 -125667649 - MER1A DNA MER1_type 0 529 1 373 290 91 34 chr12 18119378 18119554 -125666901 + MLT1J2 LTR MaLR 241 426 -24 324 318 131 28 chr12 18119998 18120212 -125666243 - MIR SINE MIR -18 244 9 1222 82 6 0 chr12 18120586 18120756 -125665699 - L1PA11 LINE L1 -5 6169 5999 752 193 31 37 chr12 18120842 18121003 -125665452 + FRAM SINE Alu 1 159 -17 317 311 23 53 chr12 18121331 18121463 -125664992 + MIR SINE MIR 17 144 -64 26 30 0 0 chr12 18123561 18123594 -125662861 + AT_rich Low_complexity Low_complexity 1 33 0 566 277 38 6 chr12 18124030 18124189 -125662266 - MIR SINE MIR 0 262 99 21 36 0 0 chr12 18124637 18124665 -125661790 + AT_rich Low_complexity Low_complexity 1 28 0 205 189 57 0 chr12 18126888 18126941 -125659514 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 28 0 0 0 chr12 18128025 18128053 -125658402 + AT_rich Low_complexity Low_complexity 1 28 0 187 340 0 0 chr12 18128060 18128110 -125658345 + L2 LINE L2 3248 3297 -16 183 267 156 0 chr12 18128692 18128737 -125657718 - L2 LINE L2 -9 3263 3212 591 264 20 0 chr12 18128848 18128996 -125657459 + MIR SINE MIR 112 262 0 288 0 0 0 chr12 18129287 18129319 -125657136 + (T)n Simple_repeat Simple_repeat 1 32 0 502 346 42 0 chr12 18129552 18129766 -125656689 + MIR SINE MIR 1 223 -39 21 36 0 0 chr12 18129805 18129833 -125656622 + AT_rich Low_complexity Low_complexity 1 28 0 401 246 134 15 chr12 18130033 18130167 -125656288 + MIR3 SINE MIR 47 196 -12 2269 196 42 2 chr12 18130200 18130649 -125655806 + MLT1C LTR MaLR 1 467 0 222 231 0 0 chr12 18130691 18130743 -125655712 + (TA)n Simple_repeat Simple_repeat 1 52 0 297 280 10 40 chr12 18131528 18131628 -125654827 + MIR SINE MIR 150 246 -16 342 0 0 0 chr12 18133314 18133352 -125653103 + (CA)n Simple_repeat Simple_repeat 2 39 0 201 244 0 0 chr12 18134387 18134432 -125652023 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 2000 196 65 7 chr12 18134713 18135116 -125651339 + MSTB LTR MaLR 1 426 0 4432 321 77 45 chr12 18136542 18140298 -125646157 + HERV16 LTR ERVL 493 4355 -1130 826 290 77 21 chr12 18140615 18141341 -125645114 + L1MC1 LINE L1 2008 2732 -3483 5742 197 32 5 chr12 18141411 18143028 -125643427 + L1MC1 LINE L1 4736 6401 -1 1928 270 102 28 chr12 18143028 18143914 -125642541 + L1ME3 LINE L1 5187 6133 -29 258 32 0 0 chr12 18143914 18143945 -125642510 + (TG)n Simple_repeat Simple_repeat 2 32 0 868 299 15 11 chr12 18147318 18147579 -125638876 + MIR SINE MIR 1 262 0 246 333 46 28 chr12 18147652 18147760 -125638695 - L2 LINE L2 -5 3308 3199 281 278 83 28 chr12 18147872 18147980 -125638475 + L2 LINE L2 3192 3305 -8 22 35 0 0 chr12 18148976 18149005 -125637450 + AT_rich Low_complexity Low_complexity 1 29 0 213 186 105 93 chr12 18149033 18149119 -125637336 + L2 LINE L2 3223 3309 -4 239 288 25 12 chr12 18149505 18149585 -125636870 + GA-rich Low_complexity Low_complexity 1 81 0 189 0 0 0 chr12 18149728 18149749 -125636706 + (CA)n Simple_repeat Simple_repeat 2 22 0 208 179 26 0 chr12 18149979 18150018 -125636437 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1615 234 11 86 chr12 18150436 18150781 -125635674 + MLT2B1 LTR ERVL 1 290 -230 3618 75 0 0 chr12 18150781 18151234 -125635221 + MLT2A2 LTR ERVL 1 453 0 1615 234 11 86 chr12 18151234 18151448 -125635007 + MLT2B1 LTR ERVL 290 518 -2 477 0 0 0 chr12 18151459 18151512 -125634943 + (TG)n Simple_repeat Simple_repeat 2 54 0 327 304 66 53 chr12 18152174 18152287 -125634168 + HAL1 LINE L1 958 1068 -1439 13518 138 36 25 chr12 18152287 18154680 -125631775 + Tigger1 DNA MER2_type 1 2418 0 327 304 66 53 chr12 18154680 18154809 -125631646 + HAL1 LINE L1 1068 1203 -1304 21 0 0 0 chr12 18155991 18156012 -125630443 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18156372 18156409 -125630046 + AT_rich Low_complexity Low_complexity 1 37 0 2005 144 3 0 chr12 18156510 18156802 -125629653 + AluSx SINE Alu 1 293 -19 221 375 0 0 chr12 18157100 18157180 -125629275 + L2 LINE L2 3234 3313 0 2246 54 9 66 chr12 18157204 18157521 -125628934 - AluY SINE Alu -12 299 1 21 0 0 0 chr12 18157693 18157714 -125628741 + AT_rich Low_complexity Low_complexity 1 21 0 216 289 42 56 chr12 18158063 18158205 -125628250 - L2 LINE L2 -577 2737 2598 1711 154 14 14 chr12 18158608 18158901 -125627554 + AluSx SINE Alu 2 294 -18 225 300 117 42 chr12 18160018 18160138 -125626317 - L2 LINE L2 -8 3264 3136 291 329 0 0 chr12 18160854 18160936 -125625519 + HERV16 LTR ERVL 1897 1978 -3018 1595 277 135 9 chr12 18160950 18161528 -125624927 + L1MEc LINE L1 68 718 -5678 322 313 60 0 chr12 18161803 18161937 -125624518 + HERV16 LTR ERVL 3427 3568 -1428 1039 326 73 47 chr12 18162006 18162662 -125623793 + HERV16 LTR ERVL 4055 4727 -1037 560 341 14 5 chr12 18162760 18162977 -125623478 + HERV16 LTR ERVL 4879 5097 -667 270 322 11 0 chr12 18163152 18163242 -125623213 + HERV16 LTR ERVL 4806 4896 -100 1053 259 97 35 chr12 18163364 18163734 -125622721 + LTR16A LTR ERVL 52 444 -6 750 282 82 5 chr12 18165344 18165564 -125620891 - MIR SINE MIR -7 255 19 488 311 76 7 chr12 18165853 18166047 -125620408 + MIR SINE MIR 2 208 -54 2018 147 18 54 chr12 18166717 18167106 -125619349 + THE1C LTR MaLR 1 375 0 1246 219 134 12 chr12 18167467 18167795 -125618660 + MLT1A2 LTR MaLR 1 368 -6 31 44 0 0 chr12 18168253 18168298 -125618157 + AT_rich Low_complexity Low_complexity 1 45 0 2240 180 7 31 chr12 18168370 18168815 -125617640 - Tigger2a DNA MER2_type 0 434 1 2199 107 0 3 chr12 18169161 18169451 -125617004 - AluSq SINE Alu -24 289 1 2349 81 0 34 chr12 18169477 18169758 -125616697 + AluY SINE Alu 1 271 -40 239 71 24 0 chr12 18169758 18169800 -125616655 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2349 81 0 34 chr12 18169800 18169838 -125616617 + AluY SINE Alu 271 309 -2 24 32 0 0 chr12 18170106 18170137 -125616318 + AT_rich Low_complexity Low_complexity 1 31 0 2457 109 43 3 chr12 18171320 18171670 -125614785 - THE1B LTR MaLR 0 364 1 258 275 217 0 chr12 18171893 18172031 -125614424 - MIR SINE MIR -77 185 18 736 340 19 4 chr12 18172138 18172394 -125614061 - MIR SINE MIR 0 262 3 321 313 104 66 chr12 18172864 18173439 -125613016 - L2 LINE L2 -1 3312 2705 357 179 46 6 chr12 18173480 18173653 -125612802 + (TA)n Simple_repeat Simple_repeat 1 180 0 235 386 9 0 chr12 18173765 18173879 -125612576 - L2 LINE L2 -689 2625 2511 266 331 178 12 chr12 18174673 18174836 -125611619 + LTR40b LTR ERVL 175 364 -98 279 114 0 0 chr12 18174885 18174929 -125611526 + (CA)n Simple_repeat Simple_repeat 1 44 0 412 334 46 26 chr12 18175182 18175532 -125610923 + L1ME LINE L1 947 1303 -4902 235 284 55 8 chr12 18175675 18175802 -125610653 + L1ME LINE L1 1477 1609 -4606 10029 177 15 11 chr12 18175814 18176133 -125610322 - L1PA14 LINE L1 -13 6148 5832 2465 91 0 0 chr12 18176133 18176440 -125610015 - AluSc SINE Alu -2 307 1 10029 177 15 11 chr12 18176440 18178906 -125607549 - L1PA14 LINE L1 -329 5832 3358 1310 217 23 26 chr12 18178908 18179258 -125607197 - L1PA14 LINE L1 -2906 3240 2892 21 0 0 0 chr12 18179632 18179653 -125606802 + AT_rich Low_complexity Low_complexity 1 21 0 1370 273 65 57 chr12 18179681 18180208 -125606247 + L1ME LINE L1 2178 2699 -3516 2233 139 21 19 chr12 18180208 18180582 -125605873 + THE1C LTR MaLR 1 375 0 1370 273 65 57 chr12 18180582 18180603 -125605852 + L1ME LINE L1 2699 2718 -3497 490 91 39 0 chr12 18180603 18180680 -125605775 - MADE1 DNA Mariner 0 80 1 1370 273 65 57 chr12 18180680 18181118 -125605337 + L1ME LINE L1 2718 3132 -3083 30 45 0 0 chr12 18181207 18181251 -125605204 + AT_rich Low_complexity Low_complexity 1 44 0 186 43 0 0 chr12 18181254 18181277 -125605178 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 383 320 17 23 chr12 18181322 18181494 -125604961 + L1ME LINE L1 3179 3349 -2866 237 204 0 0 chr12 18183071 18183115 -125603340 + GA-rich Low_complexity Low_complexity 2 45 0 310 198 168 20 chr12 18186174 18186275 -125600180 + L1ME LINE L1 4565 4680 -1535 48 0 0 0 chr12 18186324 18186372 -125600083 + AT_rich Low_complexity Low_complexity 1 48 0 6826 200 10 9 chr12 18186469 18188004 -125598451 - L1M LINE L1 -743 5403 3893 4955 92 29 3 chr12 18188004 18188365 -125598090 + L1PB1 LINE L1 5410 5760 -391 198 0 0 0 chr12 18188365 18188387 -125598068 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 225 0 0 0 chr12 18188386 18188411 -125598044 + (TA)n Simple_repeat Simple_repeat 2 26 0 4955 92 29 3 chr12 18188387 18188764 -125597691 + L1PB1 LINE L1 5760 6147 -4 382 304 127 19 chr12 18188776 18189295 -125597160 + L1ME LINE L1 4804 5378 -837 2031 137 3 16 chr12 18189295 18189602 -125596853 + AluSx SINE Alu 1 303 -9 946 133 0 22 chr12 18189615 18189795 -125596660 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 968 288 65 24 chr12 18189825 18190329 -125596126 + L1ME LINE L1 5362 5886 -345 1272 245 30 13 chr12 18190950 18191248 -125595207 + MER69 DNA AcHobo 7 309 -2217 236 242 24 40 chr12 18191281 18191405 -125595050 - L1MC4 LINE L1 -1308 6734 6613 214 258 0 0 chr12 18191405 18191471 -125594984 + (TA)n Simple_repeat Simple_repeat 1 66 0 367 362 7 0 chr12 18191580 18191718 -125594737 + MER69 DNA AcHobo 429 567 -659 * 731 231 141 12 chr12 18191715 18191971 -125594484 + MER69 DNA AcHobo 2006 2294 -232 5690 135 9 24 chr12 18191999 18192623 -125593832 + L1PA14 LINE L1 4704 5336 -825 3209 54 7 19 chr12 18192623 18193051 -125593404 + L1PA8 LINE L1 5750 6172 0 5690 135 9 24 chr12 18193051 18193868 -125592587 + L1PA14 LINE L1 5336 6128 -33 334 260 0 10 chr12 18193949 18194053 -125592402 + MER69 DNA AcHobo 2424 2526 0 303 230 0 14 chr12 18195484 18195558 -125590897 + MER5C DNA MER1_type 52 124 -200 317 271 25 0 chr12 18195613 18195706 -125590749 - Tigger7 DNA MER2_type 0 2487 639 283 192 0 0 chr12 18195740 18195792 -125590663 + Tigger3(Golem) DNA MER2_type 153 204 -2825 1414 89 61 0 chr12 18195796 18196009 -125590446 + Tigger3(Golem) DNA MER2_type 2631 2856 -173 593 53 13 0 chr12 18196009 18196085 -125590370 + MADE1 DNA Mariner 4 80 0 2906 180 39 19 chr12 18196097 18196367 -125590088 - MER7C DNA MER2_type -2426 602 339 2406 61 3 0 chr12 18196367 18196661 -125589794 + AluY SINE Alu 1 295 -16 2906 180 39 19 chr12 18196661 18196980 -125589475 - MER7C DNA MER2_type -2689 339 1 343 82 0 129 chr12 18196980 18197057 -125589398 - MER44D DNA MER2_type -1966 521 454 2271 169 35 24 chr12 18197075 18197501 -125588954 - MER44D DNA MER2_type -119 486 1 1449 224 64 43 chr12 18199519 18199957 -125586498 - MLT1C LTR MaLR 0 467 21 2299 117 3 0 chr12 18200433 18200741 -125585714 + AluSp SINE Alu 3 311 -2 21 0 0 0 chr12 18200760 18200781 -125585674 + AT_rich Low_complexity Low_complexity 1 21 0 44341 36 3 2 chr12 18200899 18207046 -125579409 + L1PA4 LINE L1 3 6155 0 1424 241 99 55 chr12 18207205 18208054 -125578401 - L1MC5 LINE L1 -31 7930 7045 21 36 0 0 chr12 18208076 18208104 -125578351 + AT_rich Low_complexity Low_complexity 1 28 0 205 286 29 0 chr12 18208141 18208211 -125578244 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 374 185 22 43 chr12 18208285 18208377 -125578078 - L1MC5 LINE L1 -1098 6863 6774 231 323 102 32 chr12 18208380 18208947 -125577508 - L1MC4a LINE L1 -1155 6653 6047 1692 185 3 0 chr12 18209015 18209301 -125577154 + AluJo SINE Alu 5 291 -21 711 274 12 37 chr12 18209363 18209608 -125576847 - L1MC4a LINE L1 -1941 5867 5629 235 116 139 0 chr12 18210564 18210607 -125575848 - MER58D DNA MER1_type 0 386 338 25 0 0 0 chr12 18210621 18210646 -125575809 + AT_rich Low_complexity Low_complexity 1 25 0 2435 169 41 8 chr12 18210658 18211150 -125575305 - L1MA4 LINE L1 -14 6286 5779 238 126 44 66 chr12 18211169 18211352 -125575103 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 3153 162 19 4 chr12 18211358 18212366 -125574089 - L1MA4 LINE L1 -497 5803 4781 1836 165 22 25 chr12 18212366 18212724 -125573731 - MER58D DNA MER1_type -29 357 1 372 221 32 32 chr12 18212802 18212897 -125573558 + L2 LINE L2 3219 3313 0 263 333 42 42 chr12 18213386 18213530 -125572925 - MIR3 SINE MIR -13 195 52 693 296 65 68 chr12 18214162 18214429 -125572026 + MLT1H LTR MaLR 1 268 -281 863 270 9 35 chr12 18214429 18214659 -125571796 - MER58A DNA MER1_type 0 224 1 693 296 65 68 chr12 18214659 18214746 -125571709 + MLT1H LTR MaLR 268 354 -195 426 39 0 0 chr12 18217511 18217563 -125568892 + (TG)n Simple_repeat Simple_repeat 2 53 0 237 65 0 0 chr12 18218423 18218454 -125568001 + (TG)n Simple_repeat Simple_repeat 1 31 0 1986 249 76 17 chr12 18218975 18219754 -125566701 + L1MC4 LINE L1 7217 8041 -1 1580 165 66 11 chr12 18221253 18221525 -125564930 - AluJo SINE Alu -24 288 2 261 372 31 0 chr12 18223343 18223472 -125562983 - L3 LINE CR1 -38 1539 1407 22 0 0 0 chr12 18223632 18223654 -125562801 + AT_rich Low_complexity Low_complexity 1 22 0 1744 129 24 86 chr12 18225279 18225424 -125561031 + L1PA16 LINE L1 5713 5865 -301 2301 100 0 3 chr12 18225424 18225723 -125560732 + AluSx SINE Alu 1 298 -14 1744 129 24 86 chr12 18225723 18225975 -125560480 + L1PA16 LINE L1 5865 6082 -84 1566 165 32 52 chr12 18226626 18226935 -125559520 + AluJo SINE Alu 1 303 -9 403 257 86 0 chr12 18227776 18227881 -125558574 + L2 LINE L2 3200 3313 0 239 293 65 66 chr12 18227896 18227981 -125558474 + MIR SINE MIR 20 106 -135 1682 191 10 57 chr12 18227981 18228364 -125558091 + MLT1A1 LTR MaLR 1 365 0 239 293 65 66 chr12 18228364 18228405 -125558050 + MIR SINE MIR 106 146 -95 2237 103 0 0 chr12 18228696 18228987 -125557468 + AluSx SINE Alu 14 304 -8 228 163 0 0 chr12 18229377 18229420 -125557035 + T-rich Low_complexity Low_complexity 1 43 0 2248 119 0 3 chr12 18230131 18230434 -125556021 + AluSx SINE Alu 1 302 -10 251 296 44 89 chr12 18230763 18230859 -125555596 + MIR SINE MIR 50 140 -122 2231 94 0 23 chr12 18230859 18231158 -125555297 + AluY SINE Alu 1 292 -19 251 296 44 89 chr12 18231158 18231196 -125555259 + MIR SINE MIR 140 178 -84 209 200 0 0 chr12 18231256 18231296 -125555159 + (CAT)n Simple_repeat Simple_repeat 2 41 0 263 311 83 23 chr12 18232205 18232337 -125554118 - MIR SINE MIR -6 256 117 2386 103 0 0 chr12 18232354 18232664 -125553791 - AluSx SINE Alu -2 310 1 370 243 138 40 chr12 18233982 18234134 -125552321 + MIR SINE MIR 30 196 -66 2560 59 0 0 chr12 18234148 18234451 -125552004 + AluY SINE Alu 1 303 -8 293 268 108 57 chr12 18234544 18234701 -125551754 - MIR SINE MIR -50 212 48 180 0 0 0 chr12 18235370 18235390 -125551065 + (T)n Simple_repeat Simple_repeat 1 20 0 2364 90 0 0 chr12 18237873 18238173 -125548282 - AluY SINE Alu -11 300 1 244 260 26 13 chr12 18238314 18238391 -125548064 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 257 273 73 60 chr12 18239257 18239407 -125547048 - MIR SINE MIR 0 262 111 2242 212 72 32 chr12 18239521 18240733 -125545722 + L1ME2 LINE L1 4757 6015 -149 1420 169 22 18 chr12 18240733 18241011 -125545444 - MLT1A1 LTR MaLR 0 365 87 4000 185 35 4 chr12 18241011 18241947 -125544508 + L1 LINE L1 2329 3293 -2853 1264 189 102 7 chr12 18241950 18242060 -125544395 + AluJo SINE Alu 12 110 -202 207 0 0 0 chr12 18242060 18242083 -125544372 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1264 189 102 7 chr12 18242083 18242247 -125544208 + AluJo SINE Alu 110 312 0 2804 195 35 5 chr12 18242248 18242548 -125543907 + L1 LINE L1 3296 3586 -2560 237 33 0 0 chr12 18242548 18242578 -125543877 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2804 195 35 5 chr12 18242578 18242907 -125543548 + L1 LINE L1 3586 3944 -2202 334 284 23 0 chr12 18242912 18243000 -125543455 - L1MC4 LINE L1 -1339 6703 6614 326 220 0 22 chr12 18243000 18243091 -125543364 + (TATATG)n Simple_repeat Simple_repeat 3 91 0 235 300 0 0 chr12 18243092 18243182 -125543273 + L1MC4 LINE L1 6614 6703 -1339 228 234 0 0 chr12 18243140 18243204 -125543251 - L1MC4 LINE L1 -1339 6703 6640 * 698 178 0 23 chr12 18243223 18243352 -125543103 + FLAM_A SINE Alu 6 131 -11 1393 128 0 0 chr12 18243354 18243580 -125542875 + L1 LINE L1 3952 4177 -1969 342 186 12 0 chr12 18243580 18243666 -125542789 + L1MA4 LINE L1 6208 6294 -6 2408 58 7 3 chr12 18243672 18243966 -125542489 - AluY SINE Alu -16 295 1 30 0 0 0 chr12 18243979 18244009 -125542446 + AT_rich Low_complexity Low_complexity 1 30 0 257 254 99 0 chr12 18245609 18245680 -125540775 - MIR SINE MIR -73 189 112 230 310 19 82 chr12 18246104 18246262 -125540193 + L2 LINE L2 2609 2756 -558 451 174 104 0 chr12 18246866 18247080 -125539375 - L1MA4A LINE L1 -25 6278 5981 186 189 0 0 chr12 18248336 18248373 -125538082 + (CATA)n Simple_repeat Simple_repeat 4 40 0 23 68 0 0 chr12 18248701 18248745 -125537710 + AT_rich Low_complexity Low_complexity 1 44 0 379 290 0 10 chr12 18248837 18248937 -125537518 - MIR3 SINE MIR -33 175 77 463 0 0 0 chr12 18250785 18250839 -125535616 + LTR12 LTR ERV1 653 706 -8 394 250 50 0 chr12 18250891 18250991 -125535464 + MIR SINE MIR 87 191 -71 216 0 0 0 chr12 18251014 18251038 -125535417 + (CA)n Simple_repeat Simple_repeat 1 24 0 584 234 53 35 chr12 18251039 18251170 -125535285 + MIR SINE MIR 89 225 -37 4913 76 45 1 chr12 18251170 18251829 -125534626 + LTR12 LTR ERV1 1 688 0 584 234 53 35 chr12 18251829 18251868 -125534587 + MIR SINE MIR 225 262 0 266 258 106 30 chr12 18252348 18252480 -125533975 - MIR3 SINE MIR -5 203 62 * 467 247 31 66 chr12 18252474 18252675 -125533780 + MIR SINE MIR 64 256 -6 186 320 16 107 chr12 18253959 18254081 -125532374 - MIR SINE MIR -78 130 20 1359 218 56 6 chr12 18255808 18256147 -125530308 + MLT1A1 LTR MaLR 10 365 0 2424 65 3 7 chr12 18256579 18256888 -125529567 - AluY SINE Alu -3 308 1 314 293 57 12 chr12 18257238 18257368 -125529087 - MIR SINE MIR -68 140 20 205 319 22 33 chr12 18257432 18257523 -125528932 - MER5A DNA MER1_type -45 144 55 333 0 0 0 chr12 18260059 18260096 -125526359 + (TG)n Simple_repeat Simple_repeat 2 38 0 824 268 52 20 chr12 18261412 18261662 -125524793 + MIR SINE MIR 5 262 0 479 245 97 36 chr12 18261837 18262033 -125524422 - L2 LINE L2 -1 3312 3105 189 431 0 0 chr12 18262192 18262301 -125524154 - L2 LINE L2 -460 2854 2746 4834 153 19 76 chr12 18262301 18262678 -125523777 + L1MA5 LINE L1 4922 5319 -981 189 0 0 0 chr12 18262678 18262699 -125523756 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2153 51 0 33 chr12 18262702 18262976 -125523479 + AluY SINE Alu 21 285 -26 4834 153 19 76 chr12 18262976 18264033 -125522422 + L1MA5 LINE L1 5321 6298 -2 536 259 56 25 chr12 18264563 18264760 -125521695 - MIR SINE MIR -48 214 12 223 352 56 50 chr12 18265324 18265662 -125520793 + L2 LINE L2 2265 2604 -710 616 317 67 31 chr12 18266536 18266896 -125519559 - HERV16 LTR ERVL -423 5341 4969 386 332 46 14 chr12 18267121 18267338 -125519117 - HERV16 LTR ERVL -1119 4645 4422 1310 210 76 74 chr12 18267343 18267693 -125518762 - MLT1D LTR MaLR 0 505 152 2061 93 10 58 chr12 18267693 18268004 -125518451 - AluSx SINE Alu -16 296 1 1310 210 76 74 chr12 18268004 18268153 -125518302 - MLT1D LTR MaLR -353 152 5 882 273 62 35 chr12 18268255 18268658 -125517797 - HERV16 LTR ERVL -1295 4359 3946 660 372 57 50 chr12 18268854 18269745 -125516710 - HERV16 LTR ERVL -3428 1568 666 1892 178 25 8 chr12 18269745 18270104 -125516351 + MLT1A1 LTR MaLR 1 365 0 660 372 57 50 chr12 18270104 18270380 -125516075 - HERV16 LTR ERVL -4330 666 393 572 169 110 15 chr12 18270465 18270601 -125515854 - L1MA10 LINE L1 -1 6333 6185 2331 109 19 25 chr12 18271123 18271489 -125514966 - THE1B LTR MaLR 0 364 1 1918 77 8 0 chr12 18271489 18271748 -125514707 - THE1B-int LTR MaLR 0 1580 1320 288 0 0 0 chr12 18272047 18272079 -125514376 + (CA)n Simple_repeat Simple_repeat 2 33 0 273 29 0 0 chr12 18272078 18272112 -125514343 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 275 268 0 61 chr12 18273185 18273267 -125513188 + L2 LINE L2 3232 3308 -5 195 191 0 147 chr12 18273476 18273544 -125512911 + L2 LINE L2 3246 3303 -10 279 0 0 0 chr12 18274117 18274148 -125512307 + (TA)n Simple_repeat Simple_repeat 1 31 0 1295 251 51 29 chr12 18274168 18274543 -125511912 + LTR10C LTR ERV1 188 570 -21 219 146 42 21 chr12 18274801 18274849 -125511606 + L2 LINE L2 3259 3307 -6 185 310 28 28 chr12 18274907 18274978 -125511477 - L2 LINE L2 -4 3268 3198 600 305 56 15 chr12 18276656 18276997 -125509458 + L1ME3A LINE L1 4636 4990 -1156 432 146 19 19 chr12 18277005 18277163 -125509292 + (TA)n Simple_repeat Simple_repeat 1 158 0 1006 181 6 0 chr12 18277163 18277329 -125509126 - FRAM SINE Alu -9 167 1 450 294 112 36 chr12 18277473 18277768 -125508687 + L1ME3A LINE L1 5144 5415 -755 4976 78 6 3 chr12 18277768 18278435 -125508020 + L1PA10 LINE L1 5499 6167 -1 450 294 112 36 chr12 18278435 18278796 -125507659 + L1ME3A LINE L1 5415 5848 -322 277 315 48 20 chr12 18278874 18279020 -125507435 + L1ME3A LINE L1 6010 6159 -11 468 224 0 0 chr12 18279268 18279353 -125507102 + L2 LINE L2 3229 3313 0 333 265 33 80 chr12 18279480 18279658 -125506797 - MLT1J LTR MaLR -21 470 262 450 250 153 23 chr12 18279662 18279838 -125506617 - MER58C DNA MER1_type 0 215 17 523 323 14 32 chr12 18279909 18280126 -125506329 - MLT1J LTR MaLR -246 265 53 313 272 102 34 chr12 18280352 18280499 -125505956 - L1ME2 LINE L1 -283 5881 5725 2137 95 7 128 chr12 18281385 18281847 -125504608 - L1MA5 LINE L1 -2 6298 5893 21 0 0 0 chr12 18282862 18282883 -125503572 + AT_rich Low_complexity Low_complexity 1 21 0 486 335 17 9 chr12 18283071 18283250 -125503205 - MIR SINE MIR -64 144 15 2405 93 0 3 chr12 18283371 18283682 -125502773 + AluSq SINE Alu 1 310 -3 3190 153 12 14 chr12 18284893 18285457 -125500998 - L1MA6 LINE L1 0 6300 5738 985 103 28 0 chr12 18285460 18285605 -125500850 + L1MA6 LINE L1 5606 5754 -546 248 343 38 45 chr12 18286072 18286203 -125500252 - L2 LINE L2 -626 2688 2558 3725 127 9 61 chr12 18286203 18286814 -125499641 - MER39B LTR ERV1 -3 650 77 2086 99 4 0 chr12 18286814 18287087 -125499368 - AluSc SINE Alu -15 294 21 3725 127 9 61 chr12 18287087 18287159 -125499296 - MER39B LTR ERV1 -576 77 3 248 343 38 45 chr12 18287159 18287292 -125499163 - L2 LINE L2 -756 2558 2426 248 323 85 43 chr12 18287997 18288129 -125498326 - L2 LINE L2 -1 3312 3170 273 29 0 0 chr12 18288129 18288163 -125498292 + (TG)n Simple_repeat Simple_repeat 2 35 0 248 323 85 43 chr12 18288163 18288194 -125498261 - L2 LINE L2 -143 3170 3142 626 129 0 0 chr12 18288217 18288302 -125498153 + MER81 DNA DNA 30 114 0 447 322 16 22 chr12 18288307 18288490 -125497965 - L2 LINE L2 -225 3088 2907 235 125 429 0 chr12 18288496 18288552 -125497903 + MADE1 DNA Mariner 1 80 0 252 318 141 28 chr12 18290057 18290312 -125496143 + L2 LINE L2 2130 2413 -901 322 283 60 60 chr12 18290505 18290671 -125495784 + LTR33 LTR ERVL 29 194 -327 611 315 90 74 chr12 18291092 18292306 -125494149 + L2 LINE L2 2045 3271 -1 278 250 29 0 chr12 18292388 18292456 -125493999 + L2 LINE L2 3187 3256 -16 269 322 99 8 chr12 18293527 18293648 -125492807 - MIR3 SINE MIR -23 185 54 184 71 71 24 chr12 18294360 18294402 -125492053 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 259 111 0 0 chr12 18294404 18294440 -125492015 + U2 snRNA snRNA 1 36 -152 327 85 0 0 chr12 18294801 18294848 -125491607 + (GA)n Simple_repeat Simple_repeat 2 48 0 1927 82 22 97 chr12 18295052 18295371 -125491084 + AluYb8 SINE Alu 1 295 -23 255 323 126 71 chr12 18295637 18296136 -125490319 + L2 LINE L2 2774 3301 -12 223 174 0 0 chr12 18296214 18296260 -125490195 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 367 354 76 56 chr12 18296431 18296827 -125489628 - L2 LINE L2 -17 3255 2852 249 339 0 0 chr12 18297030 18297145 -125489310 - MER113 DNA MER1_type? -43 478 364 639 265 104 19 chr12 18297165 18297376 -125489079 + MIR SINE MIR 34 262 0 289 143 129 0 chr12 18297388 18297458 -125488997 - MER113 DNA MER1_type? -306 215 137 5313 160 14 39 chr12 18297461 18298897 -125487558 + L1PA16 LINE L1 4435 5818 -348 1895 132 0 0 chr12 18298897 18299163 -125487292 + AluSx SINE Alu 39 304 -8 5313 160 14 39 chr12 18299163 18299491 -125486964 + L1PA16 LINE L1 5818 6153 -13 272 345 47 18 chr12 18299900 18300071 -125486384 - L2 LINE L2 -837 2477 2302 1253 146 81 158 chr12 18300232 18300663 -125485792 - MLT2D LTR ERVL -14 400 3 1918 133 133 21 chr12 18300902 18301287 -125485168 - MSTA LTR MaLR 0 428 1 380 297 28 7 chr12 18302180 18302325 -125484130 + L1ME LINE L1 5572 5719 -402 252 269 118 8 chr12 18302388 18302507 -125483948 + L1ME LINE L1 5728 5859 -262 181 346 50 10 chr12 18303188 18303289 -125483166 - MIR SINE MIR -77 185 81 6284 25 8 1 chr12 18303561 18304306 -125482149 - L1PA4 LINE L1 -3 6152 5403 320 247 177 48 chr12 18304800 18304986 -125481469 + MIR SINE MIR 47 256 -6 835 194 83 0 chr12 18305386 18305566 -125480889 - MER58B DNA MER1_type -1 340 146 2213 114 3 9 chr12 18305567 18305882 -125480573 - AluSp SINE Alu 0 313 1 244 260 26 13 chr12 18306023 18306100 -125480355 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 331 263 5 37 chr12 18307115 18307332 -125479123 + L1P4 LINE L1 5455 5664 -510 237 319 0 0 chr12 18307343 18307462 -125478993 + AluSq/x SINE Alu 6 124 -179 189 0 0 0 chr12 18307641 18307662 -125478793 + (A)n Simple_repeat Simple_repeat 1 21 0 3609 105 14 0 chr12 18307677 18308190 -125478265 + L1PA11 LINE L1 5652 6171 -3 1699 100 47 0 chr12 18308804 18309105 -125477350 - L1PA7 LINE L1 -5 6149 5835 199 328 69 0 chr12 18309534 18309592 -125476863 + L2 LINE L2 3194 3255 -17 182 148 0 0 chr12 18309953 18309980 -125476475 + L2 LINE L2 3267 3293 -20 686 44 0 11 chr12 18310543 18310634 -125475821 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 353 290 60 10 chr12 18311190 18311290 -125475165 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 18311408 18311761 -125474694 + L2 LINE L2 2955 3313 0 659 289 27 51 chr12 18312936 18313192 -125473263 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 18313481 18313524 -125472931 + A-rich Low_complexity Low_complexity 2 45 0 2016 115 0 4 chr12 18313538 18313816 -125472639 - AluSx SINE Alu -25 287 11 2232 200 131 24 chr12 18314512 18315216 -125471239 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 18315399 18315423 -125471032 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 18315566 18315593 -125470862 + (CA)n Simple_repeat Simple_repeat 2 28 0 833 169 49 0 chr12 18316216 18316358 -125470097 + MSTB1 LTR MaLR 4 152 -274 1423 158 54 0 chr12 18316656 18316897 -125469558 + MSTB1 LTR MaLR 157 410 -22 214 188 21 42 chr12 18317187 18317235 -125469220 + MIR SINE MIR 110 151 -57 210 302 143 8 chr12 18317445 18317571 -125468884 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 18317722 18317775 -125468680 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2242 48 0 0 chr12 18317971 18318242 -125468213 - L1PA5 LINE L1 -498 5656 5386 4008 47 0 2 chr12 18318242 18318733 -125467722 + L1PA5 LINE L1 5661 6151 -3 220 193 52 46 chr12 18319621 18319723 -125466732 - L2 LINE L2 -274 3039 2937 198 157 216 0 chr12 18319837 18319888 -125466567 + L2 LINE L2 3234 3295 -18 546 329 49 4 chr12 18319897 18320143 -125466312 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 18320217 18320282 -125466173 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 18320410 18320920 -125465535 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 18321282 18321634 -125464821 - L2 LINE L2 -613 2701 2289 285 197 0 0 chr12 18321640 18321706 -125464749 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 18321945 18322042 -125464413 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 18325230 18325362 -125461093 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 18325744 18325782 -125460673 + (T)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr12 18327710 18327742 -125458713 + AT_rich Low_complexity Low_complexity 1 32 0 2245 95 0 0 chr12 18327933 18328227 -125458228 + AluY SINE Alu 1 294 -17 383 337 18 30 chr12 18328301 18328467 -125457988 - MIR SINE MIR -55 207 44 23 0 0 0 chr12 18328839 18328862 -125457593 + AT_rich Low_complexity Low_complexity 1 23 0 6524 102 3 9 chr12 18329616 18330569 -125455886 + L1MA1 LINE L1 5356 6302 0 24 77 0 0 chr12 18331065 18331117 -125455338 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr12 18331182 18331205 -125455250 + AT_rich Low_complexity Low_complexity 1 23 0 408 365 45 14 chr12 18332328 18332550 -125453905 + L3 LINE CR1 199 427 -1150 272 288 114 15 chr12 18332559 18332691 -125453764 - MLT1L LTR MaLR -135 480 336 567 281 107 43 chr12 18332922 18333250 -125453205 - MLT1J2 LTR MaLR -2 448 100 450 361 102 17 chr12 18333317 18333669 -125452786 + L3 LINE CR1 475 856 -721 184 289 58 0 chr12 18333677 18333729 -125452726 - L2 LINE L2 -5 3308 3254 267 343 157 11 chr12 18333897 18334075 -125452380 + L3 LINE CR1 976 1179 -398 236 320 104 32 chr12 18336823 18336948 -125449507 + L2 LINE L2 3139 3272 0 663 300 76 13 chr12 18337083 18337320 -125449135 + MIR SINE MIR 11 262 0 440 291 8 8 chr12 18337527 18337661 -125448794 - MIR SINE MIR 0 262 129 261 326 22 65 chr12 18337693 18337877 -125448578 + L2 LINE L2 3119 3294 -19 781 158 146 126 chr12 18337879 18338126 -125448329 + AluJo SINE Alu 43 294 -18 298 299 31 10 chr12 18338160 18338257 -125448198 - MIR SINE MIR -156 106 8 327 293 145 21 chr12 18338341 18338583 -125447872 + L2 LINE L2 2042 2313 -1001 278 217 20 113 chr12 18338839 18338969 -125447486 + MLT1J2 LTR MaLR 41 162 -284 227 140 20 0 chr12 18339352 18339402 -125447053 + L1ME4a LINE L1 6060 6110 -11 256 347 20 80 chr12 18339523 18339774 -125446681 + L2 LINE L2 2867 3102 -170 2140 119 3 3 chr12 18339860 18340162 -125446293 + AluSc SINE Alu 1 302 -7 334 182 0 0 chr12 18341275 18341330 -125445125 + MER45 DNA AcHobo 1526 1580 -1 751 251 105 16 chr12 18343376 18343623 -125442832 - MER20B DNA MER1_type -287 496 228 783 276 142 35 chr12 18343748 18344114 -125442341 - MER20B DNA MER1_type -375 408 4 1441 200 17 24 chr12 18344138 18344433 -125442022 - AluJo SINE Alu -19 293 1 206 388 3 3 chr12 18344641 18344763 -125441692 + MIR SINE MIR 30 150 -64 1753 160 0 4 chr12 18344817 18345079 -125441376 - AluJb SINE Alu -29 283 23 1952 161 69 62 chr12 18346186 18346608 -125439847 + MSTB LTR MaLR 2 426 0 372 256 158 24 chr12 18346829 18346993 -125439462 + L2 LINE L2 3127 3312 -1 5861 95 17 51 chr12 18351650 18352039 -125434416 + L1PA11 LINE L1 5284 5685 -489 1719 157 0 63 chr12 18352039 18352358 -125434097 + AluSx SINE Alu 6 304 -8 5861 95 17 51 chr12 18352358 18352887 -125433568 + L1PA11 LINE L1 5685 6171 -3 25986 89 6 41 chr12 18353530 18357342 -125429113 - L1PA7 LINE L1 -5 6149 2546 324 0 0 0 chr12 18357342 18357378 -125429077 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25986 89 6 41 chr12 18357378 18358450 -125428005 - L1PA7 LINE L1 -3608 2546 1438 531 282 70 0 chr12 18358450 18358677 -125427778 + L1ME2 LINE L1 1618 1860 -4536 1358 209 80 21 chr12 18358695 18359168 -125427287 + L1ME2 LINE L1 2938 3438 -2777 334 268 79 26 chr12 18359179 18359369 -125427086 - AluY SINE Alu 0 301 102 5686 245 56 24 chr12 18360142 18360188 -125426267 + L1ME2 LINE L1 3393 3436 -2797 1799 173 23 7 chr12 18360188 18360495 -125425960 - AluSx SINE Alu 0 312 1 5686 245 56 24 chr12 18360495 18362168 -125424287 + L1ME2 LINE L1 3436 5232 -1001 2004 125 0 19 chr12 18362168 18362481 -125423974 - AluSc SINE Alu -2 307 1 5686 245 56 24 chr12 18362481 18363506 -125422949 + L1ME2 LINE L1 5232 6222 -11 649 142 0 22 chr12 18364255 18364389 -125422066 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 5019 143 16 22 chr12 18365465 18366830 -125419625 + L1PA16 LINE L1 4808 6159 -7 1952 121 41 0 chr12 18367120 18367410 -125419045 + AluSg SINE Alu 1 302 -8 490 331 93 18 chr12 18367986 18368264 -125418191 + MLT1L LTR MaLR 306 604 -11 216 0 0 0 chr12 18368774 18368798 -125417657 + (CAATT)n Simple_repeat Simple_repeat 4 27 0 595 299 117 7 chr12 18368985 18369283 -125417172 + MLT1J LTR MaLR 3 333 -178 203 194 0 0 chr12 18372163 18372199 -125414256 + A-rich Low_complexity Low_complexity 1 36 0 285 354 6 6 chr12 18372504 18372662 -125413793 + (TA)n Simple_repeat Simple_repeat 1 158 0 22 35 0 0 chr12 18375585 18375614 -125410841 + AT_rich Low_complexity Low_complexity 1 29 0 279 324 65 0 chr12 18376009 18376148 -125410307 - L1MA5 LINE L1 -412 5888 5741 230 282 56 0 chr12 18376139 18376210 -125410245 + L1ME LINE L1 5562 5636 -534 * 1598 326 65 41 chr12 18376413 18377560 -125408895 - L2 LINE L2 -3 3310 2133 1284 297 102 52 chr12 18377974 18378709 -125407746 - L2 LINE L2 -1184 2130 1359 1645 210 79 50 chr12 18378711 18379328 -125407127 + MLT1E3 LTR MaLR 1 624 0 612 318 131 42 chr12 18379329 18379779 -125406676 - L2 LINE L2 -1960 1354 865 1151 213 4 9 chr12 18380154 18380379 -125406076 + MER58A DNA MER1_type 1 224 0 367 259 31 67 chr12 18381070 18381263 -125405192 - L1M4 LINE L1 -2876 3270 3085 508 328 104 55 chr12 18381712 18382407 -125404048 + L2 LINE L2 2470 3187 -85 280 303 30 38 chr12 18382789 18382921 -125403534 + MIR SINE MIR 82 212 -50 23 54 0 0 chr12 18382978 18383015 -125403440 + AT_rich Low_complexity Low_complexity 1 37 0 365 287 126 43 chr12 18383223 18383477 -125402978 - HAL1 LINE L1 -393 2114 1840 617 259 153 10 chr12 18383561 18383874 -125402581 - HAL1 LINE L1 -803 1704 1347 392 276 40 48 chr12 18383932 18384204 -125402251 - HAL1 LINE L1 -1249 1258 989 278 231 19 29 chr12 18384208 18384312 -125402143 + (TA)n Simple_repeat Simple_repeat 1 103 0 2430 186 32 12 chr12 18384312 18384811 -125401644 - Charlie1b DNA MER1_type 0 523 15 254 269 123 8 chr12 18384897 18385027 -125401428 - HAL1 LINE L1 -1553 954 810 1106 234 13 77 chr12 18385079 18385467 -125400988 - MER20B DNA MER1_type 0 783 421 2302 205 19 79 chr12 18385484 18386157 -125400298 - L1MA9 LINE L1 -38 6274 5642 854 230 42 121 chr12 18386157 18386562 -125399893 - MER20B DNA MER1_type -343 440 68 339 306 113 42 chr12 18386846 18387199 -125399256 - HAL1 LINE L1 -2129 378 1 548 299 93 50 chr12 18389076 18389377 -125397078 - LTR33A LTR ERVL -194 329 16 629 347 34 15 chr12 18389645 18389913 -125396542 - MERVL LTR ERVL -2160 3325 3053 2039 113 14 7 chr12 18390170 18390462 -125395993 - AluSx SINE Alu -18 294 1 1179 295 62 70 chr12 18390625 18390830 -125395625 + HERV16 LTR ERVL 100 305 -4691 2103 49 46 0 chr12 18390830 18391093 -125395362 + AluY SINE Alu 6 280 -31 321 47 0 0 chr12 18391095 18391138 -125395317 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1179 295 62 70 chr12 18391138 18391781 -125394674 + HERV16 LTR ERVL 306 944 -4052 187 371 28 14 chr12 18392357 18392500 -125393955 + L2 LINE L2 2751 2895 -419 2590 164 19 8 chr12 18392602 18393085 -125393370 - L1PA16 LINE L1 -5 6161 5674 2042 127 15 26 chr12 18393644 18393983 -125392472 + MER1B DNA MER1_type 3 337 0 50 31 0 0 chr12 18394397 18394461 -125391994 + AT_rich Low_complexity Low_complexity 1 64 0 494 267 89 13 chr12 18394636 18394905 -125391550 - L2 LINE L2 0 3313 2980 216 0 0 0 chr12 18395627 18395651 -125390804 + (A)n Simple_repeat Simple_repeat 1 24 0 215 263 237 13 chr12 18396297 18396453 -125390002 - L2 LINE L2 -10 3303 3113 188 326 64 52 chr12 18396811 18396983 -125389472 - L2 LINE L2 -587 2727 2554 25 90 0 0 chr12 18397406 18397473 -125388982 + AT_rich Low_complexity Low_complexity 1 67 0 287 276 83 48 chr12 18397927 18398072 -125388383 + MIR SINE MIR 2 151 -111 288 339 0 8 chr12 18398201 18398319 -125388136 - L1M4 LINE L1 -3397 2749 2633 1867 221 60 13 chr12 18398347 18398814 -125387641 - L1MB5 LINE L1 0 6174 5686 3645 225 61 56 chr12 18398818 18399426 -125387029 + L1MA9 LINE L1 991 1595 -4953 1865 160 30 13 chr12 18399426 18399726 -125386729 - AluSx SINE Alu -7 305 1 3645 225 61 56 chr12 18399726 18402437 -125384018 + L1MA9 LINE L1 1595 6300 -248 3784 262 40 15 chr12 18402453 18403833 -125382622 + L1MB4 LINE L1 2482 3895 -2251 2921 179 27 63 chr12 18403816 18404953 -125381502 + L1MB4 LINE L1 4802 5918 -262 * 2097 138 32 6 chr12 18404953 18405300 -125381155 - THE1B LTR MaLR 0 364 9 1064 216 40 0 chr12 18405306 18405528 -125380927 + L1MB4 LINE L1 5910 6140 -40 739 245 59 81 chr12 18405566 18405902 -125380553 - L1MEc LINE L1 -3218 2997 2655 2412 62 0 3 chr12 18405902 18406209 -125380246 - AluY SINE Alu -5 306 1 739 245 59 81 chr12 18406209 18406475 -125379980 - L1MEc LINE L1 -3560 2655 2385 6609 84 3 0 chr12 18406475 18407613 -125378842 - L1PA8 LINE L1 0 6172 5024 739 245 59 81 chr12 18407613 18407627 -125378828 - L1MEc LINE L1 -3830 2385 2372 1152 196 61 61 chr12 18407627 18407923 -125378532 - AluJo SINE Alu -6 296 1 739 245 59 81 chr12 18407923 18408284 -125378171 - L1MEc LINE L1 -3843 2372 1911 2271 281 46 10 chr12 18408288 18409356 -125377099 - L1M4 LINE L1 -2179 3967 2862 9149 152 21 17 chr12 18410339 18411800 -125374655 + Tigger1 DNA MER2_type 1 1472 -946 1558 90 18 0 chr12 18411800 18412087 -125374368 + L1MA2 LINE L1 6077 6367 0 9149 152 21 17 chr12 18412087 18412209 -125374246 + Tigger1 DNA MER2_type 1472 1592 -826 703 198 0 0 chr12 18412210 18412331 -125374124 + FLAM_C SINE Alu 2 122 -21 706 108 0 0 chr12 18412332 18412434 -125374021 + Tigger1 DNA MER2_type 1580 1681 -737 3567 97 12 2 chr12 18412468 18412965 -125373490 - L1PA11 LINE L1 -8 6166 5665 1662 98 8 0 chr12 18412965 18413199 -125373256 + L1PA11 LINE L1 5418 5653 -521 4680 144 8 8 chr12 18413199 18413950 -125372505 + Tigger1 DNA MER2_type 1668 2418 0 1878 47 0 0 chr12 18415772 18416005 -125370450 - L1PA2 LINE L1 0 6155 5923 251 310 53 97 chr12 18417540 18417665 -125368790 - L2 LINE L2 -72 3200 3088 1932 140 64 17 chr12 18417665 18418023 -125368432 - THE1C LTR MaLR 0 375 1 251 310 53 97 chr12 18418023 18418123 -125368332 - L2 LINE L2 -184 3088 2985 578 126 10 0 chr12 18418130 18418233 -125368222 + (TG)n Simple_repeat Simple_repeat 2 105 0 312 349 64 40 chr12 18418376 18418625 -125367830 - L2 LINE L2 -453 2861 2607 194 246 16 33 chr12 18418770 18418831 -125367624 + MIR SINE MIR 166 225 -37 393 109 0 0 chr12 18420658 18420722 -125365733 + (TG)n Simple_repeat Simple_repeat 1 64 0 1189 177 189 0 chr12 18421133 18421381 -125365074 + AluJb SINE Alu 1 295 -17 414 364 69 46 chr12 18421424 18422108 -125364347 + L2 LINE L2 2356 3058 -214 273 308 143 0 chr12 18422283 18422374 -125364081 - L2 LINE L2 0 3313 3210 1118 225 78 19 chr12 18422393 18422664 -125363791 + MER77 LTR ERV1 316 602 -3 709 355 66 13 chr12 18422756 18423074 -125363381 + L2 LINE L2 2641 2975 -339 2395 231 28 53 chr12 18423154 18423790 -125362665 - MER21-int LTR ERV1 -1555 2636 2017 356 348 144 5 chr12 18423866 18424053 -125362402 - L2 LINE L2 -204 3068 2856 814 90 18 0 chr12 18424838 18424949 -125361506 + L1PA13 LINE L1 5550 5662 -506 2779 108 24 0 chr12 18424951 18425368 -125361087 + L1PA13 LINE L1 5729 6155 -8 930 311 101 28 chr12 18425615 18426265 -125360190 - L2 LINE L2 0 3313 2625 994 171 0 0 chr12 18426270 18426440 -125360015 + MLT2C1 LTR ERVL 5 174 -223 327 265 10 20 chr12 18426440 18426542 -125359913 + (TA)n Simple_repeat Simple_repeat 2 102 0 253 116 93 0 chr12 18426548 18426591 -125359864 + MLT2C1 LTR ERVL 349 395 -2 630 267 78 0 chr12 18426592 18426772 -125359683 - L2 LINE L2 -685 2629 2436 300 304 70 25 chr12 18426916 18427074 -125359381 + MIR SINE MIR 84 248 -14 2349 179 15 73 chr12 18427278 18427476 -125358979 + MLT2B1 LTR ERVL 6 214 -306 1624 181 23 13 chr12 18427476 18427785 -125358670 + AluJo SINE Alu 1 312 0 2349 179 15 73 chr12 18427785 18428133 -125358322 + MLT2B1 LTR ERVL 214 520 0 459 0 0 0 chr12 18430097 18430148 -125356307 + (TG)n Simple_repeat Simple_repeat 2 52 0 573 251 59 105 chr12 18430569 18430720 -125355735 + L1MEd LINE L1 569 725 -5585 1872 93 104 0 chr12 18430720 18430990 -125355465 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18430990 18431108 -125355347 + L1MEd LINE L1 725 847 -5463 2147 113 0 10 chr12 18431108 18431409 -125355046 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18431409 18432054 -125354401 + L1MEd LINE L1 847 1497 -4813 333 314 133 9 chr12 18432149 18432359 -125354096 + L1MEd LINE L1 2119 2354 -3775 364 220 17 34 chr12 18432564 18432741 -125353714 + (TA)n Simple_repeat Simple_repeat 1 174 0 1310 277 99 39 chr12 18432741 18433801 -125352654 + L1MEd LINE L1 2638 3761 -2368 621 266 47 70 chr12 18433844 18434145 -125352310 - MER21B LTR ERV1 -149 714 421 413 219 26 73 chr12 18434154 18434305 -125352150 + L1MEd LINE L1 3805 3948 -2181 255 266 184 13 chr12 18434822 18434943 -125351512 - MIR SINE MIR -58 150 19 4198 195 41 21 chr12 18435645 18436481 -125349974 - MER21B LTR ERV1 -9 854 3 198 253 121 12 chr12 18437376 18437459 -125348996 + MIR SINE MIR 166 257 -5 27 62 0 0 chr12 18438731 18438779 -125347676 + AT_rich Low_complexity Low_complexity 1 48 0 224 229 12 48 chr12 18439060 18439143 -125347312 + GA-rich Low_complexity Low_complexity 1 80 0 184 158 0 79 chr12 18439826 18439864 -125346591 - L2 LINE L2 -37 3235 3201 399 21 0 0 chr12 18439900 18439948 -125346507 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 335 145 47 chr12 18440297 18441061 -125345394 - L2 LINE L2 -649 2665 1827 318 283 94 31 chr12 18441456 18441615 -125344840 + MIR SINE MIR 17 185 -77 285 75 0 0 chr12 18443247 18443287 -125343168 + (CA)n Simple_repeat Simple_repeat 2 41 0 2178 104 3 3 chr12 18443952 18444250 -125342205 - AluSg SINE Alu -12 298 1 1356 265 49 15 chr12 18444473 18444884 -125341571 + MER110 LTR ERV1 46 470 -21 650 289 33 0 chr12 18445187 18445367 -125341088 + MIR SINE MIR 71 256 -6 396 0 0 0 chr12 18445958 18446002 -125340453 + (CA)n Simple_repeat Simple_repeat 2 45 0 446 49 16 0 chr12 18447701 18447762 -125338693 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 446 322 74 37 chr12 18449111 18449518 -125336937 - L1MC4a LINE L1 -1843 5965 5544 194 343 181 19 chr12 18449687 18449792 -125336663 - L2 LINE L2 -9 3263 3142 1176 244 125 13 chr12 18449927 18450390 -125336065 - HAL1 LINE L1 -688 1819 1305 2010 218 94 13 chr12 18450392 18450942 -125335513 + MER97b DNA MER1_type? 4 598 -455 222 229 61 8 chr12 18450955 18451086 -125335369 + (TA)n Simple_repeat Simple_repeat 1 138 0 243 88 0 0 chr12 18451100 18451134 -125335321 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 182 55 0 chr12 18451276 18451331 -125335124 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 340 42 46 chr12 18451366 18451672 -125334783 - HAL1 LINE L1 -1551 956 652 351 291 69 87 chr12 18451922 18452197 -125334258 - HAL1 LINE L1 -2233 274 5 21 36 0 0 chr12 18452420 18452448 -125334007 + AT_rich Low_complexity Low_complexity 1 28 0 579 244 77 6 chr12 18452777 18452945 -125333510 - MIR SINE MIR -16 246 67 1316 270 88 17 chr12 18452964 18453382 -125333073 - LTR50 LTR ERVL -7 788 341 2730 10 0 3 chr12 18454130 18454436 -125332019 + AluYa5 SINE Alu 1 305 -6 197 328 16 0 chr12 18454713 18454777 -125331678 + L2 LINE L2 3249 3313 0 355 299 0 41 chr12 18455890 18455987 -125330468 + L2 LINE L2 3221 3313 0 318 377 62 36 chr12 18455998 18456467 -125329988 - L2 LINE L2 -869 2445 1965 308 326 132 16 chr12 18456807 18457065 -125329390 - L2 LINE L2 -222 3091 2804 190 353 98 0 chr12 18458548 18458650 -125327805 + L2 LINE L2 2553 2664 -650 11620 63 3 0 chr12 18458936 18461202 -125325253 - L1PA6 LINE L1 -13 6141 3866 243 339 156 0 chr12 18461571 18461680 -125324775 + L2 LINE L2 3180 3305 -8 904 264 25 21 chr12 18463190 18463425 -125323030 + MIR SINE MIR 27 262 0 204 188 0 0 chr12 18464836 18464868 -125321587 + (CA)n Simple_repeat Simple_repeat 1 32 0 249 211 0 0 chr12 18465573 18465630 -125320825 + T-rich Low_complexity Low_complexity 1 57 0 36 0 0 0 chr12 18466131 18466167 -125320288 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 18467093 18467119 -125319336 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 18467276 18467297 -125319158 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 18468902 18468923 -125317532 + AT_rich Low_complexity Low_complexity 1 21 0 253 252 238 7 chr12 18470104 18470247 -125316208 - MER104 DNA Tc2 -4 176 1 237 159 0 0 chr12 18470375 18470419 -125316036 + (TA)n Simple_repeat Simple_repeat 1 44 0 281 307 11 0 chr12 18470530 18470618 -125315837 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 22 56 0 0 chr12 18470694 18470730 -125315725 + AT_rich Low_complexity Low_complexity 1 36 0 248 365 75 45 chr12 18471934 18472293 -125314162 + L2 LINE L2 2257 2626 -688 204 53 0 53 chr12 18472427 18472465 -125313990 + (TTTTTA)n Simple_repeat Simple_repeat 1 180 0 2494 31 0 3 chr12 18472465 18472753 -125313702 - AluY SINE Alu 0 325 1 244 372 70 6 chr12 18472894 18473050 -125313405 + L2 LINE L2 2890 3055 -217 213 329 29 0 chr12 18473475 18473545 -125312910 - L2 LINE L2 -799 2515 2444 502 264 96 0 chr12 18473751 18473876 -125312579 - MER58A DNA MER1_type 0 140 4 235 299 105 90 chr12 18473877 18474355 -125312100 - L2 LINE L2 -1068 2246 1762 6252 152 25 20 chr12 18474371 18476636 -125309819 + L1MA5A LINE L1 4016 6292 -5 21 0 0 0 chr12 18477087 18477108 -125309347 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18477258 18477295 -125309160 + AT_rich Low_complexity Low_complexity 1 37 0 890 238 38 33 chr12 18477731 18477971 -125308484 - MIR SINE MIR -10 252 12 24 32 0 0 chr12 18479829 18479860 -125306595 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 18479889 18479910 -125306545 + AT_rich Low_complexity Low_complexity 1 21 0 558 323 205 12 chr12 18480312 18480712 -125305743 + L3 LINE CR1 1094 1570 -7 445 295 34 0 chr12 18480838 18480987 -125305468 - MER103 DNA DNA -3 163 10 21 36 0 0 chr12 18481108 18481136 -125305319 + AT_rich Low_complexity Low_complexity 1 28 0 902 299 28 38 chr12 18481225 18481619 -125304836 - Tigger8 DNA MER2_type -167 499 110 195 162 27 0 chr12 18482899 18482936 -125303519 - L2 LINE L2 -1096 2218 2181 259 341 83 39 chr12 18482987 18483216 -125303239 + L2 LINE L2 2549 2787 -527 3593 170 60 18 chr12 18483269 18483982 -125302473 + Tigger2 DNA MER2_type 2 744 -1974 1555 135 12 4 chr12 18484047 18484299 -125302156 + Tigger2 DNA MER2_type 2463 2716 -2 276 265 0 29 chr12 18484681 18484749 -125301706 + L2 LINE L2 3247 3312 -1 32 26 0 0 chr12 18485105 18485144 -125301311 + AT_rich Low_complexity Low_complexity 1 39 0 853 209 26 68 chr12 18486131 18486365 -125300090 + MER58A DNA MER1_type 1 224 0 321 269 135 43 chr12 18486430 18486571 -125299884 + MIR SINE MIR 83 236 -26 230 0 33 0 chr12 18486887 18486917 -125299538 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 318 280 120 20 chr12 18487578 18487678 -125298777 + L2 LINE L2 3203 3312 -1 1880 200 31 45 chr12 18488193 18488638 -125297817 - L1MCa LINE L1 -5945 481 43 1907 134 0 33 chr12 18489617 18489922 -125296533 + AluSx SINE Alu 1 295 -17 5394 255 46 64 chr12 18490024 18491841 -125294614 + L1MB7 LINE L1 15 1908 -5230 1691 177 0 3 chr12 18491841 18492162 -125294293 + AluSx SINE Alu 1 320 0 5394 255 46 64 chr12 18492162 18492943 -125293512 + L1MB7 LINE L1 1908 2702 -4436 6280 246 68 44 chr12 18493224 18493617 -125292838 + L1MB7 LINE L1 2762 3144 -3813 686 112 0 0 chr12 18493617 18493724 -125292731 + L1MA1 LINE L1 6193 6299 -3 6280 246 68 44 chr12 18493724 18495912 -125290543 + L1MB7 LINE L1 3144 5376 -1581 941 154 11 0 chr12 18495912 18496087 -125290368 + L1MA4 LINE L1 6113 6289 -11 6280 246 68 44 chr12 18496087 18496397 -125290058 + L1MB7 LINE L1 5376 5677 -1280 10430 154 30 24 chr12 18496397 18499420 -125287035 - L1MA3 LINE L1 -8 7716 4670 2031 167 60 32 chr12 18499425 18499944 -125286511 - MLT2A2 LTR ERVL 0 554 1 20106 190 28 6 chr12 18499944 18504487 -125281968 - L1MA3 LINE L1 -2900 4665 17 4078 204 35 9 chr12 18504493 18504915 -125281540 + L1MB7 LINE L1 5659 6068 -927 339 85 0 0 chr12 18504915 18504962 -125281493 + (TG)n Simple_repeat Simple_repeat 2 48 0 4078 204 35 9 chr12 18504962 18505848 -125280607 + L1MB7 LINE L1 6068 6995 0 21 0 0 0 chr12 18505848 18505869 -125280586 + AT_rich Low_complexity Low_complexity 1 21 0 349 276 30 81 chr12 18505977 18506274 -125280181 + L1M4c LINE L1 1364 1839 -904 200 184 0 0 chr12 18506497 18506535 -125279920 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 125 0 0 chr12 18506759 18506815 -125279640 + (TG)n Simple_repeat Simple_repeat 2 57 0 588 301 167 30 chr12 18507039 18507441 -125279014 + LTR16A1 LTR ERVL 1 457 0 731 343 48 26 chr12 18508443 18508860 -125277595 + HERV16 LTR ERVL 1092 1517 -3479 1120 331 59 33 chr12 18508908 18509724 -125276731 + HERV16 LTR ERVL 1719 2561 -2670 259 191 29 15 chr12 18509987 18510055 -125276400 + (CA)n Simple_repeat Simple_repeat 2 70 0 24 53 0 0 chr12 18510062 18510100 -125276355 + AT_rich Low_complexity Low_complexity 1 38 0 1739 171 11 57 chr12 18510712 18511062 -125275393 - MER1B DNA MER1_type -1 336 3 802 130 135 5 chr12 18511406 18511598 -125274857 - L1 LINE L1 -1601 4545 4329 * 1515 201 25 6 chr12 18511595 18511913 -125274542 + L1 LINE L1 4536 4859 -1287 * 2185 260 25 58 chr12 18511909 18513816 -125272639 - L1M2 LINE L1 -4059 2789 1222 1975 177 11 64 chr12 18515312 18515748 -125270707 - MLT2D LTR ERVL 0 414 2 214 423 66 0 chr12 18516819 18516956 -125269499 + MIR3 SINE MIR 9 154 -54 1935 159 0 0 chr12 18517449 18517745 -125268710 - AluSx SINE Alu -16 296 1 209 269 0 0 chr12 18517808 18517860 -125268595 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 778 244 100 35 chr12 18518017 18518336 -125268119 - L1ME1 LINE L1 -1 6165 5826 664 253 32 61 chr12 18518339 18518715 -125267740 - L1ME1 LINE L1 -1462 4684 4320 * 3152 191 27 45 chr12 18518695 18519443 -125267012 - L1MA10 LINE L1 -14 6320 5587 9609 217 39 61 chr12 18519446 18520644 -125265811 - L1P5 LINE L1 -473 6386 5163 186 43 0 0 chr12 18520644 18520667 -125265788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9609 217 39 61 chr12 18520667 18521477 -125264978 - L1P5 LINE L1 -1696 5163 4337 2138 103 23 7 chr12 18521477 18521778 -125264677 - AluSc SINE Alu 0 309 4 9609 217 39 61 chr12 18521778 18522382 -125264073 - L1P5 LINE L1 -2522 4337 3721 1804 172 0 23 chr12 18522382 18522685 -125263770 - AluJb SINE Alu -16 296 1 9609 217 39 61 chr12 18522685 18523737 -125262718 - L1P5 LINE L1 -3138 3721 2648 1615 112 0 0 chr12 18523737 18523983 -125262472 - AluSg/x SINE Alu 0 316 71 9609 217 39 61 chr12 18523983 18525427 -125261028 - L1P5 LINE L1 -4211 2648 1346 293 279 0 0 chr12 18525432 18525511 -125260944 - L1P5 LINE L1 -5299 1550 1472 329 399 29 78 chr12 18525529 18525810 -125260645 - L1M2 LINE L1 -5736 1113 847 332 316 58 19 chr12 18526215 18526370 -125260085 - L1P5 LINE L1 -5244 1595 1435 677 376 28 34 chr12 18526563 18526900 -125259555 - L1P5 LINE L1 -6320 519 184 1014 30 0 15 chr12 18526900 18527033 -125259422 - L1PA5 LINE L1 0 6154 6024 677 376 28 34 chr12 18527033 18527163 -125259292 - L1P5 LINE L1 -6655 184 55 260 186 0 0 chr12 18527183 18527226 -125259229 + tRNA-Met-e tRNA tRNA 1 43 -32 1667 257 96 70 chr12 18527228 18528342 -125258113 - L1M4 LINE L1 -1942 4204 3033 2180 113 0 10 chr12 18528342 18528643 -125257812 - AluSg1 SINE Alu -11 298 1 1667 257 96 70 chr12 18528643 18529146 -125257309 - L1M4 LINE L1 -3113 3033 2545 584 159 148 39 chr12 18529164 18529346 -125257109 - L1MA9 LINE L1 -7 6305 6104 487 290 76 20 chr12 18529359 18529662 -125256793 - L1MEc LINE L1 -5579 817 498 213 39 0 0 chr12 18529762 18529788 -125256667 + (TC)n Simple_repeat Simple_repeat 1 26 0 509 313 70 9 chr12 18529871 18530101 -125256354 - L1MEc LINE L1 -6117 279 36 366 190 13 0 chr12 18531588 18531667 -125254788 + L1MA4A LINE L1 6201 6280 -23 373 297 22 0 chr12 18531755 18531846 -125254609 - L2 LINE L2 -2 3270 3178 330 26 0 0 chr12 18534793 18534832 -125251623 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr12 18535281 18535306 -125251149 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 18536271 18536293 -125250162 + AT_rich Low_complexity Low_complexity 1 22 0 404 309 7 37 chr12 18537981 18538117 -125248338 - L2 LINE L2 0 3313 3182 2004 112 26 3 chr12 18538127 18538430 -125248025 + AluSg SINE Alu 1 310 0 208 372 54 20 chr12 18538839 18538987 -125247468 - L2 LINE L2 -908 2406 2254 414 268 0 0 chr12 18538987 18539099 -125247356 + L1MC1 LINE L1 4272 4383 -1763 * 5409 193 13 16 chr12 18539092 18539613 -125246842 + L1MC1 LINE L1 4602 5123 -1210 1352 101 64 14 chr12 18539613 18539831 -125246624 - MER30 DNA MER1_type -1 229 1 5409 193 13 16 chr12 18539831 18540958 -125245497 + L1MC1 LINE L1 5123 6239 -94 275 291 233 35 chr12 18540958 18541271 -125245184 - L2 LINE L2 -1077 2237 1863 196 151 19 19 chr12 18542472 18542525 -125243930 + CT-rich Low_complexity Low_complexity 4 56 0 2099 134 10 0 chr12 18542526 18542832 -125243623 - AluSg SINE Alu -1 309 1 358 319 21 7 chr12 18542832 18542976 -125243479 + CT-rich Low_complexity Low_complexity 2 147 0 1236 198 30 106 chr12 18543022 18543427 -125243028 + MLT1A2 LTR MaLR 1 374 0 242 266 44 80 chr12 18544862 18544975 -125241480 - L2 LINE L2 0 3313 3205 370 304 74 89 chr12 18545006 18545332 -125241123 + MLT1K LTR MaLR 262 582 -6 25 0 0 0 chr12 18545434 18545459 -125240996 + AT_rich Low_complexity Low_complexity 1 25 0 944 127 14 15 chr12 18546364 18547107 -125239348 - HSATII Satellite Satellite -53 742 1 216 269 25 34 chr12 18547183 18547302 -125239153 + (TTAAA)n Simple_repeat Simple_repeat 4 121 0 * 241 336 0 26 chr12 18547217 18547330 -125239125 - HSATII Satellite Satellite -13 157 48 22 0 0 0 chr12 18548999 18549021 -125237434 + AT_rich Low_complexity Low_complexity 1 22 0 256 125 0 0 chr12 18549035 18549075 -125237380 + L1P3 LINE L1 1461 1500 -4961 25 31 0 0 chr12 18549502 18549534 -125236921 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18549635 18549665 -125236790 + AT_rich Low_complexity Low_complexity 1 30 0 941 188 74 10 chr12 18549823 18550025 -125236430 - MER20 DNA MER1_type -4 215 1 6841 158 21 11 chr12 18550107 18551368 -125235087 - L1P LINE L1 -831 5315 4055 5501 93 15 48 chr12 18551367 18552228 -125234227 + L1PA12 LINE L1 5336 6168 0 * 1639 212 33 12 chr12 18552842 18553177 -125233278 + MER2 DNA MER2_type 1 342 -3 1897 135 18 0 chr12 18553227 18553509 -125232946 - AluSx SINE Alu -12 300 14 2319 94 3 0 chr12 18553665 18553973 -125232482 + AluY SINE Alu 1 309 -2 2450 263 75 54 chr12 18554264 18555939 -125230516 + L1M4 LINE L1 2804 4514 -1632 1391 288 31 27 chr12 18555939 18556007 -125230448 + HERVL40 LTR ERVL 3774 3840 -1690 2324 70 10 0 chr12 18556007 18556307 -125230148 - AluY SINE Alu -8 303 1 1391 288 31 27 chr12 18556307 18556721 -125229734 + HERVL40 LTR ERVL 3840 4258 -1272 1651 148 39 36 chr12 18556749 18557080 -125229375 + THE1C LTR MaLR 21 352 -23 5724 216 34 24 chr12 18557207 18560041 -125226414 - L1 LINE L1 -2711 4497 1614 1919 266 31 62 chr12 18560074 18560716 -125225739 - L1 LINE L1 -6567 642 21 628 173 70 0 chr12 18560746 18560893 -125225562 + LTR40b LTR ERVL 327 462 0 1595 270 77 24 chr12 18560893 18561224 -125225231 - L1MDa LINE L1 -2026 4189 3877 2132 88 3 50 chr12 18561224 18561541 -125224914 - AluSp SINE Alu -9 304 3 1595 270 77 24 chr12 18561541 18563463 -125222992 - L1MDa LINE L1 -2338 3877 1306 303 284 13 19 chr12 18563605 18563760 -125222695 - L1MDa LINE L1 -5230 1166 1013 986 179 19 24 chr12 18563869 18564076 -125222379 - L1M3 LINE L1 -626 5793 5588 291 30 0 0 chr12 18564076 18564109 -125222346 + U6 snRNA snRNA 1 33 -74 9109 233 76 37 chr12 18564109 18566485 -125219970 - L1M3 LINE L1 -782 5600 3317 1517 188 33 0 chr12 18566485 18566757 -125219698 + AluSx SINE Alu 1 281 -31 9109 233 76 37 chr12 18566757 18566775 -125219680 - L1M3 LINE L1 -3065 3317 3301 186 43 0 0 chr12 18566775 18566798 -125219657 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9109 233 76 37 chr12 18566798 18569478 -125216977 - L1M3 LINE L1 -3081 3301 306 236 156 0 0 chr12 18569580 18569625 -125216830 - LTR66 LTR ERVL -172 438 394 228 174 0 0 chr12 18569587 18569633 -125216822 + LTR66 LTR ERVL 394 439 -171 * 183 80 0 0 chr12 18569637 18569662 -125216793 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1049 252 50 27 chr12 18569664 18570001 -125216454 - MLT2D LTR ERVL -69 345 1 1244 235 50 4 chr12 18570001 18570282 -125216173 - L1M3 LINE L1 -6075 309 16 2413 137 3 3 chr12 18570319 18570683 -125215772 + THE1B LTR MaLR 1 364 0 716 23 0 0 chr12 18570755 18570843 -125215612 + L1PA3 LINE L1 6068 6155 0 1096 251 50 56 chr12 18571380 18571758 -125214697 + MLT1B LTR MaLR 13 388 -2 302 344 45 25 chr12 18572854 18573011 -125213444 + MIR SINE MIR 101 260 -2 32 43 0 0 chr12 18573511 18573557 -125212898 + AT_rich Low_complexity Low_complexity 1 46 0 196 151 19 19 chr12 18573596 18573649 -125212806 + GA-rich Low_complexity Low_complexity 4 56 0 482 330 59 17 chr12 18575044 18575280 -125211175 - L2 LINE L2 -212 3101 2856 468 299 164 5 chr12 18575301 18575515 -125210940 - LTR16A1 LTR ERVL -30 427 180 320 372 28 7 chr12 18575689 18575834 -125210621 - L2 LINE L2 -602 2712 2565 2362 75 0 10 chr12 18576451 18576758 -125209697 + AluY SINE Alu 1 304 -7 378 0 0 0 chr12 18579100 18579142 -125207313 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 109 10 0 chr12 18579176 18579470 -125206985 - AluSx SINE Alu -15 297 1 440 126 11 0 chr12 18579631 18579718 -125206737 + (TC)n Simple_repeat Simple_repeat 1 88 0 1034 99 19 0 chr12 18581357 18581519 -125204936 + L1PA12 LINE L1 5883 6047 -121 258 386 79 7 chr12 18581642 18581782 -125204673 + L2 LINE L2 3121 3270 -2 28 0 0 0 chr12 18581825 18581853 -125204602 + AT_rich Low_complexity Low_complexity 1 28 0 226 256 237 38 chr12 18582611 18582822 -125203633 - LTR16C LTR ERVL -79 412 160 354 23 0 0 chr12 18584158 18584201 -125202254 + (TG)n Simple_repeat Simple_repeat 1 43 0 2238 242 107 9 chr12 18584213 18585005 -125201450 - MER63C DNA MER1_type -14 916 47 40 21 0 0 chr12 18585064 18585111 -125201344 + AT_rich Low_complexity Low_complexity 1 47 0 41992 42 1 2 chr12 18585215 18591404 -125195051 + L1PA3 LINE L1 9 6190 0 3233 149 76 18 chr12 18592247 18592864 -125193591 - MER39B LTR ERV1 0 653 1 327 364 115 16 chr12 18593380 18593754 -125192701 - L1ME LINE L1 -463 5699 5289 3939 146 46 60 chr12 18594336 18595347 -125191108 + pTR5 LTR ERV1 741 2029 -409 241 277 11 0 chr12 18595347 18595441 -125191014 + LTR30 LTR ERV1 548 642 -80 1456 90 0 9 chr12 18595444 18595667 -125190788 + pTR5 LTR ERV1 172 392 -2046 584 291 45 39 chr12 18595672 18596005 -125190450 - L1ME LINE L1 -1440 4706 4372 392 316 91 19 chr12 18596183 18596392 -125190063 - L1ME LINE L1 -1817 4329 4106 1486 167 51 4 chr12 18597182 18597457 -125188998 + Ricksha_b DNA DNA 1 288 -966 2903 140 32 13 chr12 18597476 18597841 -125188614 - L1PB3 LINE L1 0 6154 5774 408 82 0 0 chr12 18597841 18597902 -125188553 + (TG)n Simple_repeat Simple_repeat 2 62 0 2903 140 32 13 chr12 18597902 18598065 -125188390 - L1PB3 LINE L1 -380 5774 5616 2945 128 66 53 chr12 18598065 18598627 -125187828 + LTR12 LTR ERV1 13 581 -133 5540 197 51 27 chr12 18598627 18600331 -125186124 - L1PBb LINE L1 -2315 3888 2227 428 123 0 0 chr12 18600331 18600404 -125186051 - MER41B LTR ERV1 -81 554 482 5540 197 51 27 chr12 18600404 18602400 -125184055 - L1PBb LINE L1 -3976 2227 18 3206 286 39 43 chr12 18602399 18604010 -125182445 - L1PBa LINE L1 -5256 1607 3 * 5278 159 21 12 chr12 18604033 18604830 -125181625 + Ricksha_b DNA DNA 274 1082 -1772 2463 62 0 7 chr12 18604830 18605136 -125181319 - AluY SINE Alu -7 304 1 5278 159 21 12 chr12 18605136 18605304 -125181151 + Ricksha_b DNA DNA 1082 1247 -7 230 222 56 0 chr12 18605523 18605577 -125180878 - ORSL DNA AcHobo -218 57 1 800 271 28 0 chr12 18605784 18606002 -125180453 + MER58A DNA MER1_type 1 224 0 301 336 168 0 chr12 18606889 18607038 -125179417 + MIR3 SINE MIR 28 201 -7 272 175 16 0 chr12 18607200 18607263 -125179192 + CT-rich Low_complexity Low_complexity 2 65 0 1367 163 117 72 chr12 18608788 18609217 -125177238 - LTR7 LTR ERV1 -2 448 1 2429 69 45 13 chr12 18609217 18609595 -125176860 - HERVH LTR ERV1 0 7713 7324 1039 148 84 5 chr12 18609595 18609797 -125176658 - HERVH LTR ERV1 -1894 5819 5602 4081 148 0 1 chr12 18609804 18610466 -125175989 - HERVH LTR ERV1 -2564 5149 4489 3179 116 4 8 chr12 18610461 18610972 -125175483 - HERVH LTR ERV1 -3713 4000 3492 * 854 128 20 0 chr12 18610962 18611110 -125175345 - HERVH LTR ERV1 -4423 3290 3140 * 2410 110 0 10 chr12 18611104 18611487 -125174968 - HERVH LTR ERV1 -4726 2987 2609 * 15437 83 49 8 chr12 18611480 18613827 -125172628 - HERVH LTR ERV1 -5269 2444 1 1451 135 123 79 chr12 18613829 18614258 -125172197 - LTR7 LTR ERV1 -2 448 1 1691 165 43 4 chr12 18614383 18614662 -125171793 - AluJb SINE Alu -22 290 1 1706 207 114 79 chr12 18614803 18615567 -125170888 + LTR1B LTR ERV1 1 983 -37 471 316 48 19 chr12 18615950 18616182 -125170273 + MIR SINE MIR 22 260 -2 217 256 103 86 chr12 18616216 18616333 -125170122 + L2 LINE L2 3154 3272 0 274 365 66 17 chr12 18616479 18616660 -125169795 + MIR3 SINE MIR 16 205 -3 22 35 0 0 chr12 18618042 18618071 -125168384 + AT_rich Low_complexity Low_complexity 1 29 0 1521 261 53 34 chr12 18618712 18619218 -125167237 - LTR40a LTR ERVL -1 518 3 186 362 63 39 chr12 18619760 18619887 -125166568 + MIR3 SINE MIR 3 132 -76 23 0 0 0 chr12 18620527 18620550 -125165905 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr12 18620550 18620582 -125165873 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr12 18620594 18620618 -125165837 + AT_rich Low_complexity Low_complexity 1 24 0 237 339 91 0 chr12 18621399 18621520 -125164935 - MIR SINE MIR -78 184 53 293 309 0 21 chr12 18621621 18621715 -125164740 - MIR SINE MIR -12 250 159 417 278 191 6 chr12 18621739 18621912 -125164543 + MIR SINE MIR 32 236 -26 209 311 14 27 chr12 18622665 18622739 -125163716 - MIR SINE MIR -182 80 8 2482 55 0 0 chr12 18622778 18623068 -125163387 - AluY SINE Alu -21 290 1 839 324 98 8 chr12 18623740 18624117 -125162338 + LTR16B LTR ERVL 1 411 -53 275 312 21 28 chr12 18624306 18624447 -125162008 + MLT1H LTR MaLR 141 280 -269 243 246 3 0 chr12 18624568 18624635 -125161820 + MLT1H LTR MaLR 475 549 0 699 217 0 92 chr12 18625377 18625617 -125160838 - MER20 DNA MER1_type 0 219 2 1497 225 74 0 chr12 18625678 18626016 -125160439 + MLT1A1 LTR MaLR 1 363 -2 28 0 0 0 chr12 18627211 18627239 -125159216 + AT_rich Low_complexity Low_complexity 1 28 0 3288 114 28 2 chr12 18627352 18627850 -125158605 - MER75 DNA T2_type -3 511 1 316 347 34 0 chr12 18627852 18627999 -125158456 + L1M3c LINE L1 1228 1379 -4762 385 224 0 0 chr12 18628022 18628098 -125158357 + MLT1A1 LTR MaLR 1 76 -320 1774 174 30 75 chr12 18628099 18628536 -125157919 + MSTB1 LTR MaLR 1 417 -15 848 187 43 135 chr12 18628551 18628877 -125157578 + MLT1A1 LTR MaLR 70 365 0 242 348 30 6 chr12 18629286 18629450 -125157005 + L1MEc LINE L1 1624 1791 -4605 319 291 0 80 chr12 18629675 18629826 -125156629 + L1MEc LINE L1 2158 2296 -4100 249 289 50 75 chr12 18629862 18630264 -125156191 + L1MEc LINE L1 2293 2684 -3531 492 251 242 6 chr12 18630312 18630647 -125155808 + L1MEc LINE L1 2805 3218 -2997 316 312 74 50 chr12 18630675 18631172 -125155283 + L1MEc LINE L1 3309 3817 -2398 717 259 7 0 chr12 18631194 18631337 -125155118 - MER82 DNA MER2_type -20 633 490 1743 131 115 35 chr12 18631367 18631681 -125154774 - MER1B DNA MER1_type 0 339 1 * 1769 231 39 18 chr12 18631681 18632116 -125154339 - MER82 DNA MER2_type -209 444 1 488 249 92 29 chr12 18632988 18633161 -125153294 - MLT1J1 LTR MaLR -246 200 17 2249 88 3 19 chr12 18633976 18634283 -125152172 - AluY SINE Alu -9 302 1 274 274 91 89 chr12 18635324 18635740 -125150715 + MLT1J LTR MaLR 1 417 -94 19693 52 27 2 chr12 18635819 18639102 -125147353 + L1PA5 LINE L1 2838 6154 0 26 0 0 0 chr12 18639102 18639128 -125147327 + AT_rich Low_complexity Low_complexity 1 26 0 799 250 60 116 chr12 18639614 18639994 -125146461 - L2 LINE L2 -762 2552 2194 470 305 102 80 chr12 18640455 18640617 -125145838 - L1MEd LINE L1 -5286 833 676 2069 99 0 14 chr12 18640617 18640911 -125145544 - AluSg SINE Alu -18 292 3 470 305 102 80 chr12 18640911 18641210 -125145245 - L1MEd LINE L1 -5443 676 362 2082 164 11 6 chr12 18642124 18642484 -125143971 - MLT1A1 LTR MaLR 0 365 4 216 308 15 0 chr12 18644309 18644374 -125142081 + MIR SINE MIR 4 69 -193 1982 176 12 0 chr12 18646089 18646419 -125140036 + MER7A DNA MER2_type 2 333 -13 355 259 0 12 chr12 18647024 18647105 -125139350 - L2 LINE L2 -4 3309 3230 580 306 24 60 chr12 18648706 18649075 -125137380 + MARNA DNA Mariner 24 379 -207 203 59 0 29 chr12 18649164 18649198 -125137257 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 604 255 20 7 chr12 18649199 18649348 -125137107 - FAM SINE Alu -34 151 1 399 289 44 63 chr12 18649649 18649808 -125136647 - MIR3 SINE MIR -14 194 39 913 151 0 6 chr12 18650250 18650525 -125135930 - AluSc SINE Alu 0 425 152 828 93 8 0 chr12 18650529 18650647 -125135808 + AluSq/x SINE Alu 15 133 -180 1641 247 3 6 chr12 18650701 18651065 -125135390 - MLT1A1 LTR MaLR 0 365 3 1196 350 45 38 chr12 18651672 18652326 -125134129 - L2 LINE L2 -308 3005 2341 1980 209 35 0 chr12 18652326 18652728 -125133727 - MER47B DNA MER2_type -1 417 2 1196 350 45 38 chr12 18652728 18652828 -125133627 - L2 LINE L2 -972 2341 2243 357 332 104 26 chr12 18652926 18653233 -125133222 - L2 LINE L2 -1343 1971 1641 420 188 10 62 chr12 18653631 18653709 -125132746 - 5S rRNA rRNA -30 91 17 1959 152 52 17 chr12 18653709 18654071 -125132384 + THE1C LTR MaLR 1 375 0 420 188 10 62 chr12 18654071 18654088 -125132367 - 5S rRNA rRNA -104 17 1 187 254 0 51 chr12 18654268 18654327 -125132128 - MIR SINE MIR -103 159 104 25 0 0 0 chr12 18654559 18654584 -125131871 + AT_rich Low_complexity Low_complexity 1 25 0 256 300 20 87 chr12 18654782 18654932 -125131523 + L3 LINE CR1 123 262 -1315 338 322 154 7 chr12 18655842 18655991 -125130464 + MER5A DNA MER1_type 1 171 -18 1466 245 94 6 chr12 18655991 18656460 -125129995 - L1ME3A LINE L1 -17 6153 5644 844 245 53 39 chr12 18656466 18656846 -125129609 - MER67C LTR ERV1 -8 506 145 3379 188 59 9 chr12 18656858 18657599 -125128856 + L1 LINE L1 4461 5238 -908 787 176 35 0 chr12 18657600 18657742 -125128713 - MER67D LTR ERV1 -367 147 1 452 215 209 34 chr12 18657750 18657927 -125128528 - L1ME3A LINE L1 -528 5642 5435 332 299 76 21 chr12 18657934 18658225 -125128230 - L1ME3A LINE L1 -2170 3976 3670 454 242 0 0 chr12 18658262 18658353 -125128102 - U6 snRNA snRNA -16 91 1 204 135 0 0 chr12 18658420 18658457 -125127998 + (TCC)n Simple_repeat Simple_repeat 2 38 0 333 330 66 63 chr12 18659143 18659600 -125126855 - L2 LINE L2 -1292 2022 1565 359 290 22 65 chr12 18660627 18660765 -125125690 + MLT1J LTR MaLR 149 280 -231 1470 136 16 4 chr12 18661091 18661349 -125125106 + L1MA4 LINE L1 6034 6294 -6 776 138 109 14 chr12 18661482 18661620 -125124835 - FRAM SINE Alu -26 150 1 378 61 0 0 chr12 18662282 18662331 -125124124 + (A)n Simple_repeat Simple_repeat 1 49 0 200 290 75 32 chr12 18663533 18663626 -125122829 - MIR SINE MIR -92 170 74 303 268 107 42 chr12 18664340 18664508 -125121947 - L1MC/D LINE L1 -2256 5552 5374 207 167 0 0 chr12 18664963 18664999 -125121456 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 206 48 0 chr12 18665205 18665268 -125121187 + T-rich Low_complexity Low_complexity 2 67 0 2472 160 29 35 chr12 18665481 18665852 -125120603 - L1MA8 LINE L1 -4 6287 5918 2031 163 9 0 chr12 18665852 18666196 -125120259 - MER7A DNA MER2_type 0 346 2 2472 160 29 35 chr12 18666196 18666343 -125120112 - L1MA8 LINE L1 -373 5918 5772 1313 261 50 2 chr12 18666343 18666825 -125119630 - L1M3c LINE L1 -4548 2550 2046 1062 200 9 14 chr12 18666832 18667052 -125119403 - AluJo SINE Alu -7 305 87 738 343 31 22 chr12 18667052 18667469 -125118986 - L1M3c LINE L1 -5156 2012 1592 2437 177 69 88 chr12 18667491 18668232 -125118223 - LTR8A LTR ERV1 0 727 1 2363 136 126 32 chr12 18668885 18668949 -125117506 - LTR10A LTR ERV1 -62 547 490 2380 73 7 0 chr12 18668949 18669252 -125117203 - AluSp SINE Alu -7 306 2 2363 136 126 32 chr12 18669252 18669686 -125116769 - LTR10A LTR ERV1 -119 490 2 274 137 20 20 chr12 18669709 18669760 -125116695 - LTR10B LTR ERV1 -496 51 1 604 284 49 18 chr12 18669981 18670266 -125116189 - L1MC/D LINE L1 -1524 4622 4329 509 155 39 19 chr12 18670266 18670416 -125116039 - AluJb SINE Alu 0 329 178 359 200 14 0 chr12 18670533 18670603 -125115852 + MLT2B3 LTR ERVL 1 71 -483 1847 210 89 59 chr12 18670694 18671166 -125115289 + MLT2B3 LTR ERVL 69 554 0 809 293 17 0 chr12 18671206 18671445 -125115010 + L1M4 LINE L1 3896 4138 -2008 355 245 9 19 chr12 18671466 18671572 -125114883 - L1MC/D LINE L1 -2667 3479 3375 * 399 268 16 22 chr12 18671569 18671752 -125114703 + L1M4 LINE L1 4143 4324 -1822 679 289 30 4 chr12 18671769 18672039 -125114416 - L1M4 LINE L1 -1538 5403 5127 354 23 0 0 chr12 18672044 18672087 -125114368 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1580 187 7 4 chr12 18672087 18672360 -125114095 - AluJb SINE Alu -28 284 11 928 266 94 52 chr12 18672360 18673618 -125112837 - L1MCc LINE L1 -3058 3883 2608 342 255 88 42 chr12 18673744 18673936 -125112519 - L1MCc LINE L1 -4670 2271 2071 1644 313 98 48 chr12 18674024 18675306 -125111149 - L1MCc LINE L1 -4887 1536 464 249 33 0 0 chr12 18675306 18675336 -125111119 + (T)n Simple_repeat Simple_repeat 1 30 0 1644 313 98 48 chr12 18675336 18675806 -125110649 - L1MCc LINE L1 -5959 464 19 1534 255 104 18 chr12 18676578 18677021 -125109434 - MLT1E1 LTR MaLR 0 654 174 331 338 48 61 chr12 18677409 18677621 -125108834 - L2 LINE L2 -285 3028 2815 3039 153 17 57 chr12 18677621 18678198 -125108257 - MLT2B3 LTR ERVL 0 554 1 331 338 48 61 chr12 18678198 18678446 -125108009 - L2 LINE L2 -498 2815 2575 26 0 0 0 chr12 18678555 18678581 -125107874 + AT_rich Low_complexity Low_complexity 1 26 0 411 322 155 47 chr12 18679771 18680215 -125106240 + LTR33 LTR ERVL 2 493 -28 404 350 120 43 chr12 18681147 18681521 -125104934 + L2 LINE L2 2898 3300 -13 680 203 75 43 chr12 18681616 18681803 -125104652 - MLT2D LTR ERVL 0 414 222 4090 186 32 66 chr12 18731803 18733027 -125053428 - L1P5 LINE L1 -592 5559 4398 234 0 0 0 chr12 18733027 18733053 -125053402 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4090 186 32 66 chr12 18733053 18733306 -125053149 - L1P5 LINE L1 -1753 4398 4138 26 0 0 0 chr12 18733357 18733383 -125053072 + AT_rich Low_complexity Low_complexity 1 26 0 206 139 28 0 chr12 18733669 18733705 -125052750 + (ATG)n Simple_repeat Simple_repeat 3 39 0 3694 25 2 0 chr12 18735933 18736375 -125050080 + L1PA2 LINE L1 5712 6154 -1 682 274 62 59 chr12 18737362 18737701 -125048754 + MLT1K LTR MaLR 227 566 -22 334 333 0 10 chr12 18738099 18738195 -125048260 - MIR SINE MIR -150 112 18 1811 163 38 27 chr12 18738914 18739283 -125047172 + THE1C LTR MaLR 1 373 -2 437 261 87 81 chr12 18739513 18739943 -125046512 + MLT1E2 LTR MaLR 1 415 -211 22981 26 10 0 chr12 18740089 18743136 -125043319 + L1P1 LINE L1 2585 5661 -494 10310 173 34 18 chr12 18743239 18745186 -125041269 - HERVE LTR ERV1 -5834 1979 1 1453 245 46 23 chr12 18745186 18745622 -125040833 - LTR2 LTR ERV1 0 449 4 5139 209 28 3 chr12 18745624 18746926 -125039529 + L1 LINE L1 4095 5428 -738 744 204 0 26 chr12 18747027 18747179 -125039276 + MLT1E2 LTR MaLR 479 626 0 196 228 33 130 chr12 18747414 18747506 -125038949 - L3 LINE CR1 -46 1531 1449 2983 262 65 22 chr12 18747772 18749735 -125036720 - L1ME2 LINE L1 -9 6224 4173 1047 280 117 40 chr12 18749735 18750043 -125036412 - L1ME2 LINE L1 -2265 3950 3667 513 32 0 0 chr12 18750043 18750106 -125036349 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1047 280 117 40 chr12 18750106 18750653 -125035802 - L1ME2 LINE L1 -2548 3667 3029 577 222 87 0 chr12 18750654 18750780 -125035675 + MSTA LTR MaLR 31 167 -208 1158 60 0 20 chr12 18750796 18750947 -125035508 + AluY SINE Alu 1 148 -163 692 217 187 3 chr12 18750954 18751156 -125035299 + MSTA LTR MaLR 203 426 -2 239 306 12 0 chr12 18751159 18751244 -125035211 - L1ME2 LINE L1 -3671 2544 2459 1961 138 3 10 chr12 18751447 18751743 -125034712 - AluSg SINE Alu -16 294 1 535 357 21 26 chr12 18751795 18752218 -125034237 - L1ME2 LINE L1 -5968 428 8 21 0 0 0 chr12 18752461 18752482 -125033973 + AT_rich Low_complexity Low_complexity 1 21 0 1110 207 41 98 chr12 18754130 18754517 -125031938 + MLT1A1 LTR MaLR 1 365 0 1034 414 89 5 chr12 18754519 18754901 -125031554 + MLT1A1-int LTR MaLR 3 416 -1319 369 0 0 0 chr12 18754902 18754943 -125031512 + (CA)n Simple_repeat Simple_repeat 2 42 0 2380 181 18 16 chr12 18754970 18755466 -125030989 - L1MA5 LINE L1 -22 6278 5782 800 243 23 0 chr12 18755509 18755686 -125030769 - L1MA5 LINE L1 -504 5793 5613 2256 243 26 87 chr12 18755686 18756465 -125029990 + MLT1A1-int LTR MaLR 407 1137 -598 466 225 109 14 chr12 18756599 18756737 -125029718 + L2 LINE L2 1377 1527 -1787 1268 336 152 2 chr12 18756738 18757303 -125029152 + L2 LINE L2 2006 2655 -659 1097 164 82 86 chr12 18757314 18757570 -125028885 - Tigger3(Golem) DNA MER2_type -2773 256 2 1052 278 57 39 chr12 18758117 18758559 -125027896 + L1MCc LINE L1 17 466 -5957 1098 284 70 61 chr12 18758634 18759786 -125026669 + L1MCc LINE L1 655 1822 -4938 722 282 52 134 chr12 18760004 18760660 -125025795 + L1MDa LINE L1 34 635 -5905 1123 263 75 18 chr12 18760921 18761591 -125024864 + L1MDa LINE L1 2159 2832 -3708 334 159 171 0 chr12 18761603 18761691 -125024764 + L1MDa LINE L1 3903 4005 -2535 * 1002 189 52 21 chr12 18761670 18761903 -125024552 + L1MC1 LINE L1 6479 6718 -9 1307 227 3 7 chr12 18761912 18762198 -125024257 + L1MDa LINE L1 4181 4465 -2075 289 185 120 20 chr12 18762293 18762393 -125024062 + L1ME1 LINE L1 36 254 -6289 316 185 0 109 chr12 18762423 18762515 -125023940 + L1ME1 LINE L1 4500 4581 -1959 227 284 12 0 chr12 18762610 18762691 -125023764 + (TA)n Simple_repeat Simple_repeat 1 82 0 2518 243 45 31 chr12 18762744 18763892 -125022563 + L1ME1 LINE L1 4800 5958 -602 1095 194 18 98 chr12 18763901 18764247 -125022208 + MLT1B LTR MaLR 59 377 -13 1628 264 80 9 chr12 18764251 18764815 -125021640 + L1ME1 LINE L1 5952 6555 -5 224 401 35 7 chr12 18765170 18765312 -125021143 + MIR3 SINE MIR 40 185 -23 306 106 0 0 chr12 18765410 18765457 -125020998 + (CCTA)n Simple_repeat Simple_repeat 3 49 0 21 0 0 0 chr12 18765569 18765590 -125020865 + AT_rich Low_complexity Low_complexity 1 21 0 1792 142 7 0 chr12 18765631 18765913 -125020542 + AluSx SINE Alu 1 284 -28 3797 39 0 0 chr12 18765913 18766370 -125020085 + L1PA3 LINE L1 5696 6152 -3 503 310 116 38 chr12 18766630 18766949 -125019506 + L3 LINE CR1 1230 1573 -4 345 272 40 48 chr12 18766990 18767115 -125019340 + L3 LINE CR1 1337 1460 -117 1704 255 48 10 chr12 18767713 18768128 -125018327 - MLT1F1 LTR MaLR 0 567 137 21 36 0 0 chr12 18769883 18769911 -125016544 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 18770351 18770383 -125016072 + AT_rich Low_complexity Low_complexity 1 32 0 1992 170 49 30 chr12 18770450 18770856 -125015599 - MLT2D LTR ERVL 0 414 1 2560 40 0 3 chr12 18772102 18772403 -125014052 + AluY SINE Alu 11 310 -1 3292 175 6 38 chr12 18772415 18773108 -125013347 + L1PA16 LINE L1 5479 6149 -17 28 71 0 0 chr12 18773235 18773291 -125013164 + AT_rich Low_complexity Low_complexity 1 56 0 795 297 112 24 chr12 18773351 18773691 -125012764 - L2 LINE L2 -535 2779 2410 678 197 7 29 chr12 18773765 18773902 -125012553 + THE1C LTR MaLR 3 136 -239 373 211 11 11 chr12 18773902 18773992 -125012463 + L1PA16 LINE L1 6060 6149 -17 1158 148 20 15 chr12 18774187 18774399 -125012056 + THE1C LTR MaLR 143 355 0 21 0 0 0 chr12 18774612 18774633 -125011822 + AT_rich Low_complexity Low_complexity 1 21 0 2256 78 0 36 chr12 18774870 18775179 -125011276 + AluY SINE Alu 1 298 -13 228 178 22 0 chr12 18775762 18775807 -125010648 + A-rich Low_complexity Low_complexity 2 47 0 263 378 68 55 chr12 18776548 18776865 -125009590 - L2 LINE L2 0 3313 2958 25 31 0 0 chr12 18776865 18776897 -125009558 + AT_rich Low_complexity Low_complexity 1 32 0 263 378 68 55 chr12 18776897 18776929 -125009526 - L2 LINE L2 -355 2958 2928 1394 234 8 44 chr12 18777357 18777745 -125008710 + MLT1A2 LTR MaLR 1 374 0 442 362 5 9 chr12 18777837 18778047 -125008408 + L2 LINE L2 2152 2360 -954 418 216 0 0 chr12 18778143 18778217 -125008238 + MLT1H LTR MaLR 51 124 -425 5148 163 35 30 chr12 18778267 18779537 -125006918 - L1MA5 LINE L1 0 6300 5009 1916 146 33 3 chr12 18779537 18779839 -125006616 - AluSx SINE Alu -1 311 1 5148 163 35 30 chr12 18779839 18780331 -125006124 - L1MA5 LINE L1 -1291 5009 4521 343 280 75 0 chr12 18780341 18780448 -125006007 + MLT1H LTR MaLR 236 350 -199 352 349 35 12 chr12 18780606 18780775 -125005680 + L2 LINE L2 2757 2929 -385 435 147 33 7 chr12 18780805 18780955 -125005500 + (TA)n Simple_repeat Simple_repeat 2 155 0 564 273 33 112 chr12 18780969 18781299 -125005156 + L2 LINE L2 3010 3313 0 759 106 18 0 chr12 18781388 18781501 -125004954 - AluY SINE Alu 0 311 197 23 33 0 0 chr12 18782167 18782197 -125004258 + AT_rich Low_complexity Low_complexity 1 30 0 461 253 67 33 chr12 18782262 18782412 -125004043 - MLT1G LTR MaLR -2 588 434 281 340 58 16 chr12 18782664 18782852 -125003603 - MLT1F1 LTR MaLR -343 224 29 7430 203 22 12 chr12 18782852 18783469 -125002986 - L1P5 LINE L1 -708 5443 4833 2211 213 32 10 chr12 18783469 18783966 -125002489 + LTR22 LTR ERVK 1 508 -1 7430 203 22 12 chr12 18783966 18785135 -125001320 - L1P5 LINE L1 -1318 4833 3655 4498 105 4 28 chr12 18785135 18785836 -125000619 + L1PB1 LINE L1 5465 6151 0 230 152 0 0 chr12 18785864 18785897 -125000558 - tRNA-Lys-AAG tRNA tRNA -43 33 1 21 0 0 0 chr12 18786130 18786151 -125000304 + AT_rich Low_complexity Low_complexity 1 21 0 2094 118 13 3 chr12 18786495 18786800 -124999655 + AluSx SINE Alu 1 308 -4 324 279 44 22 chr12 18787295 18787431 -124999024 - MLT1-int LTR MaLR -910 461 323 979 235 32 4 chr12 18787433 18787680 -124998775 - L1MC3 LINE L1 0 7785 7532 36 23 0 0 chr12 18787717 18787760 -124998695 + AT_rich Low_complexity Low_complexity 1 43 0 1059 428 56 0 chr12 18787760 18788045 -124998410 - AluSx SINE Alu -1 301 1 23 0 0 0 chr12 18788096 18788119 -124998336 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 18789033 18789060 -124997395 + AT_rich Low_complexity Low_complexity 1 27 0 854 299 48 14 chr12 18790274 18790565 -124995890 + L2 LINE L2 1129 1429 -1885 765 226 62 57 chr12 18790599 18790773 -124995682 + MLT1E LTR MaLR 51 223 -370 596 151 33 46 chr12 18790773 18790895 -124995560 - L1MA8 LINE L1 -2 6289 6168 478 95 81 0 chr12 18790895 18790969 -124995486 + MADE1 DNA Mariner 1 80 0 596 151 33 46 chr12 18790969 18790998 -124995457 - L1MA8 LINE L1 -123 6168 6140 765 226 62 57 chr12 18790998 18791389 -124995066 + MLT1E LTR MaLR 223 591 -2 181 267 0 0 chr12 18791418 18791463 -124994992 + L2 LINE L2 1453 1497 -1817 1865 140 3 3 chr12 18791478 18791764 -124994691 - AluSx SINE Alu -20 292 7 2523 40 3 0 chr12 18791801 18792104 -124994351 - AluYa5 SINE Alu -7 304 1 258 32 0 0 chr12 18792187 18792218 -124994237 + (TG)n Simple_repeat Simple_repeat 2 32 0 318 288 9 9 chr12 18792300 18792411 -124994044 + (TA)n Simple_repeat Simple_repeat 1 111 0 1007 340 70 6 chr12 18792465 18792953 -124993502 + L2 LINE L2 1846 2364 -950 568 310 188 15 chr12 18792955 18793513 -124992942 + L2 LINE L2 2522 3179 -134 215 354 0 0 chr12 18793670 18793735 -124992720 - MIR SINE MIR -187 75 11 261 0 0 0 chr12 18794481 18794510 -124991945 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 314 23 23 chr12 18795911 18795997 -124990458 + MIR SINE MIR 2 87 -175 253 267 38 29 chr12 18796021 18796126 -124990329 - MLT1L LTR MaLR -13 602 497 262 342 64 16 chr12 18796289 18796476 -124989979 + MLT1L LTR MaLR 368 563 -52 349 295 42 58 chr12 18796923 18797113 -124989342 + MIR SINE MIR 76 262 0 474 335 83 54 chr12 18797180 18797661 -124988794 + LTR33 LTR ERVL 26 520 -1 2300 90 3 10 chr12 18797698 18798010 -124988445 - AluSg SINE Alu 0 310 1 22 70 0 0 chr12 18798208 18798251 -124988204 + AT_rich Low_complexity Low_complexity 1 43 0 2186 96 3 0 chr12 18798369 18798651 -124987804 + AluSq SINE Alu 5 287 -26 2505 49 20 0 chr12 18798660 18798964 -124987491 + AluY SINE Alu 1 310 -1 456 292 113 35 chr12 18799131 18799415 -124987040 + LTR67 LTR ERVL 202 507 -50 1335 133 17 43 chr12 18799825 18800058 -124986397 - AluSp SINE Alu -86 227 1 232 172 31 16 chr12 18800138 18800202 -124986253 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1324 223 51 33 chr12 18800210 18800542 -124985913 - MER7A DNA MER2_type -10 336 1 1339 228 76 42 chr12 18800551 18800998 -124985457 - MLT1C LTR MaLR 0 467 6 305 280 0 50 chr12 18801228 18801328 -124985127 + L1ME4a LINE L1 5989 6083 -38 259 346 76 19 chr12 18801608 18801779 -124984676 + MIR SINE MIR 23 206 -56 211 140 70 0 chr12 18802089 18802146 -124984309 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 235 146 18 36 chr12 18802258 18802313 -124984142 + (TA)n Simple_repeat Simple_repeat 1 54 0 1148 99 93 0 chr12 18802516 18802698 -124983757 - L1MA5A LINE L1 -12 6285 6087 27 0 0 0 chr12 18802939 18802966 -124983489 + AT_rich Low_complexity Low_complexity 1 27 0 2362 116 24 5 chr12 18802967 18803346 -124983109 - L1PA16 LINE L1 -9 6157 5772 722 314 21 42 chr12 18803376 18803991 -124982464 - L1ME3A LINE L1 -241 5929 5328 325 44 0 22 chr12 18804833 18804878 -124981577 + MLT2A2 LTR ERVL 407 450 -3 344 59 20 0 chr12 18804878 18804929 -124981526 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 351 0 0 0 chr12 18805006 18805045 -124981410 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 267 23 61 chr12 18805074 18805205 -124981250 + L1MC4 LINE L1 7917 8042 0 369 322 61 26 chr12 18805383 18805613 -124980842 + L1ME LINE L1 3973 4210 -1936 2102 88 32 0 chr12 18805635 18805919 -124980536 - AluY SINE Alu -18 293 1 21 0 0 0 chr12 18805920 18805941 -124980514 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 18805995 18806016 -124980439 + (A)n Simple_repeat Simple_repeat 1 21 0 410 255 0 28 chr12 18806070 18806176 -124980279 + MER106B DNA MER1_type 21 123 -936 521 309 80 20 chr12 18806264 18806465 -124979990 - MLT1I LTR MaLR -52 357 145 369 225 0 0 chr12 18806465 18806554 -124979901 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 214 71 12 chr12 18806559 18806643 -124979812 + L1MC4 LINE L1 6615 6703 -1339 242 322 0 0 chr12 18806659 18806749 -124979706 + L1MC4 LINE L1 6614 6703 -1339 486 252 0 0 chr12 18806750 18806881 -124979574 + (TA)n Simple_repeat Simple_repeat 1 131 0 234 337 0 0 chr12 18806887 18806976 -124979479 - L1MC4 LINE L1 -1340 6702 6614 * 262 284 23 0 chr12 18806952 18807040 -124979415 + L1MC4 LINE L1 6614 6703 -1339 249 172 0 35 chr12 18807010 18807068 -124979387 - L1MC4 LINE L1 -1339 6703 6648 * 325 296 39 61 chr12 18807319 18807549 -124978906 + L1ME LINE L1 4550 4774 -1372 403 275 117 39 chr12 18807588 18808258 -124978197 + L1ME LINE L1 4862 5575 -587 2737 138 9 0 chr12 18808548 18809022 -124977433 - THE1B-int LTR MaLR -1150 430 1 1895 164 25 33 chr12 18809022 18809199 -124977256 - THE1B LTR MaLR 0 364 187 2491 14 0 0 chr12 18809199 18809474 -124976981 + AluYa5 SINE Alu 37 311 0 1895 164 25 33 chr12 18809474 18809663 -124976792 - THE1B LTR MaLR -177 187 1 9006 196 14 11 chr12 18809663 18811877 -124974578 + L1P5 LINE L1 3301 5514 -637 1303 214 86 12 chr12 18811872 18812209 -124974246 + L1MA10 LINE L1 5972 6333 -1 * 279 100 0 0 chr12 18812270 18812310 -124974145 - MADE1 DNA Mariner -40 40 1 200 182 0 0 chr12 18812738 18812771 -124973684 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 404 56 23 chr12 18812956 18813387 -124973068 - L2 LINE L2 -1 3271 2827 185 330 67 57 chr12 18813573 18813782 -124972673 - L2 LINE L2 -774 2540 2330 230 159 0 0 chr12 18814833 18814877 -124971578 + (TA)n Simple_repeat Simple_repeat 1 44 0 219 139 0 0 chr12 18815846 18815882 -124970573 + (T)n Simple_repeat Simple_repeat 1 36 0 1186 260 65 68 chr12 18816318 18817010 -124969445 + Charlie7 DNA MER1_type 34 723 -1889 183 162 0 0 chr12 18817101 18817138 -124969317 + (TA)n Simple_repeat Simple_repeat 2 38 0 528 305 70 10 chr12 18817631 18817831 -124968624 - MIR SINE MIR 0 262 51 22 35 0 0 chr12 18818666 18818695 -124967760 + AT_rich Low_complexity Low_complexity 1 29 0 570 303 63 31 chr12 18819439 18819693 -124966762 + MIR SINE MIR 1 262 0 371 303 76 28 chr12 18819929 18820140 -124966315 - L2 LINE L2 0 3313 3009 985 248 106 20 chr12 18820308 18820611 -124965844 - MER2 DNA MER2_type -16 329 1 23 54 0 0 chr12 18820623 18820660 -124965795 + AT_rich Low_complexity Low_complexity 1 37 0 330 335 197 0 chr12 18820737 18820955 -124965500 - MIR SINE MIR 0 262 2 24 0 0 0 chr12 18821012 18821036 -124965419 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 56 19 chr12 18821395 18821502 -124964953 - MIR SINE MIR 0 262 152 1893 53 0 0 chr12 18821577 18821805 -124964650 - AluY SINE Alu -8 303 76 432 0 0 0 chr12 18823070 18823118 -124963337 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 194 65 0 chr12 18823732 18823825 -124962630 + (TA)n Simple_repeat Simple_repeat 1 99 0 228 35 0 0 chr12 18823833 18823862 -124962593 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr12 18824512 18824539 -124961916 + (TG)n Simple_repeat Simple_repeat 2 28 0 1561 179 7 23 chr12 18824795 18825096 -124961359 + AluJb SINE Alu 17 312 0 332 344 53 8 chr12 18825637 18825768 -124960687 + MIR3 SINE MIR 21 157 -51 50 59 0 0 chr12 18826101 18826186 -124960269 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 18826602 18826624 -124959831 + AT_rich Low_complexity Low_complexity 1 22 0 780 237 17 6 chr12 18826916 18827093 -124959362 - MER58A DNA MER1_type 0 224 46 23 54 0 0 chr12 18827456 18827493 -124958962 + AT_rich Low_complexity Low_complexity 1 37 0 846 259 89 25 chr12 18828161 18828485 -124957970 - L1ME2 LINE L1 -9 6155 5811 1097 263 90 57 chr12 18828491 18829534 -124956921 - L1MDa LINE L1 -4025 2696 1464 877 321 79 42 chr12 18829558 18830631 -124955824 - L1MEc LINE L1 -5143 1253 141 2491 20 7 0 chr12 18831194 18831492 -124954963 + L1P LINE L1 2186 2485 -3661 1589 247 31 9 chr12 18831592 18832046 -124954409 - L1P LINE L1 -883 5263 4800 279 0 0 0 chr12 18832046 18832077 -124954378 + (TC)n Simple_repeat Simple_repeat 2 32 0 301 196 0 0 chr12 18832077 18832133 -124954322 + L1MC4 LINE L1 6648 6703 -1339 276 172 0 0 chr12 18832133 18832191 -124954264 + (TA)n Simple_repeat Simple_repeat 2 59 0 512 220 27 0 chr12 18832204 18832366 -124954089 - L1P LINE L1 -1300 4846 4674 * 606 277 30 24 chr12 18832364 18832700 -124953755 + L1M4c LINE L1 2053 2390 -3994 233 253 24 12 chr12 18832755 18832838 -124953617 - L1MDa LINE L1 -5183 1357 1274 25 65 0 0 chr12 18833989 18834035 -124952420 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr12 18834168 18834207 -124952248 + AT_rich Low_complexity Low_complexity 1 39 0 1436 208 64 22 chr12 18834378 18834718 -124951737 - MLT1A1 LTR MaLR 0 365 4 220 373 20 20 chr12 18834837 18835038 -124951417 - MIR SINE MIR 0 262 62 25 51 0 0 chr12 18835054 18835093 -124951362 + AT_rich Low_complexity Low_complexity 1 39 0 242 326 7 0 chr12 18837592 18837736 -124948719 + L1M4 LINE L1 5197 5341 -805 4222 324 90 35 chr12 18837765 18840239 -124946216 - L2 LINE L2 -676 2638 28 2629 176 0 2 chr12 18840280 18840762 -124945693 + L1P LINE L1 4124 4604 -1542 22 0 0 0 chr12 18840771 18840793 -124945662 + AT_rich Low_complexity Low_complexity 1 22 0 921 278 57 22 chr12 18843132 18843538 -124942917 - L1ME3A LINE L1 -219 5951 5532 26 50 0 0 chr12 18843736 18843776 -124942679 + AT_rich Low_complexity Low_complexity 1 40 0 291 299 164 45 chr12 18844519 18844720 -124941735 - LTR67 LTR ERVL -225 332 108 181 331 24 57 chr12 18844833 18844957 -124941498 - MIR SINE MIR -142 120 1 401 302 38 33 chr12 18845618 18845783 -124940672 + MIR SINE MIR 3 169 -67 455 359 105 34 chr12 18846213 18846331 -124940124 + L2 LINE L2 2636 2744 -528 2184 109 0 25 chr12 18846331 18846652 -124939803 - AluSq SINE Alu 0 313 1 455 359 105 34 chr12 18846652 18847125 -124939330 + L2 LINE L2 2744 3270 -2 1360 86 19 10 chr12 18847369 18847578 -124938877 - L1MA6 LINE L1 0 6300 6090 3885 116 9 7 chr12 18847605 18848175 -124938280 - MER39B LTR ERV1 -79 574 4 1045 63 0 28 chr12 18848478 18848620 -124937835 - L1PA10 LINE L1 0 6168 6031 23 33 0 0 chr12 18849164 18849194 -124937261 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 18850450 18850482 -124935973 + AT_rich Low_complexity Low_complexity 1 32 0 369 322 56 14 chr12 18851472 18851615 -124934840 - MIR SINE MIR -60 202 54 903 345 28 16 chr12 18854082 18854517 -124931938 + L1M3c LINE L1 1360 1799 -5697 1056 270 45 16 chr12 18854535 18854917 -124931538 + L1M3c LINE L1 2176 2568 -4921 909 303 79 19 chr12 18854945 18855682 -124930773 + L1M3c LINE L1 2803 3583 -3982 8862 146 46 46 chr12 18855691 18859396 -124927059 + L1PBa LINE L1 1 4014 -2848 2074 167 28 0 chr12 18859403 18859757 -124926698 - THE1B LTR MaLR 0 364 1 2631 128 68 0 chr12 18859762 18860176 -124926279 - THE1B-int LTR MaLR -6 1574 1133 9653 151 6 21 chr12 18860278 18861865 -124924590 + Harlequin LTR ERV1 3335 4896 -2917 * 12775 191 12 7 chr12 18861861 18864148 -124922307 + Harlequin LTR ERV1 5469 7766 -47 526 211 10 0 chr12 18864142 18864246 -124922209 + Harlequin LTR ERV1 6747 6851 -45 * 2101 222 31 2 chr12 18864349 18864764 -124921691 + MLT1A1-int LTR MaLR 1308 1734 -1 1015 221 50 99 chr12 18864765 18865149 -124921306 + MLT1A1 LTR MaLR 1 365 0 224 30 30 0 chr12 18865189 18865222 -124921233 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3167 143 25 0 chr12 18865274 18865757 -124920698 + MER1A DNA MER1_type 35 529 0 215 31 31 0 chr12 18867532 18867564 -124918891 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 100 0 0 chr12 18867772 18867812 -124918643 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 30 0 0 0 chr12 18869205 18869235 -124917220 + AT_rich Low_complexity Low_complexity 1 30 0 1190 173 157 0 chr12 18869245 18869500 -124916955 - L1PA16 LINE L1 -2 6164 5870 2062 124 0 14 chr12 18870803 18871094 -124915361 + AluSc SINE Alu 6 292 -17 417 303 31 6 chr12 18872055 18872217 -124914238 - L3 LINE CR1 -603 974 809 1216 188 104 8 chr12 18872361 18872610 -124913845 + MSTA LTR MaLR 3 275 -153 7005 211 104 19 chr12 18872610 18874228 -124912227 + MER52A LTR ERV1 1 1755 0 886 143 136 0 chr12 18874228 18874365 -124912090 + MSTA LTR MaLR 272 428 0 239 274 0 48 chr12 18875455 18875517 -124910938 + L2 LINE L2 3204 3262 -10 183 302 69 82 chr12 18876511 18876670 -124909785 - L2 LINE L2 -1 3271 3115 23 0 0 0 chr12 18878188 18878211 -124908244 + AT_rich Low_complexity Low_complexity 1 23 0 2393 63 20 3 chr12 18878370 18878669 -124907786 - AluY SINE Alu -7 304 1 1383 207 121 15 chr12 18878957 18879295 -124907160 - MLT1A2 LTR MaLR 0 374 1 679 284 91 23 chr12 18879859 18880224 -124906231 - L2 LINE L2 -157 3156 2771 180 0 0 0 chr12 18880647 18880667 -124905788 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1972 115 7 0 chr12 18880667 18880945 -124905510 - AluSx SINE Alu -32 280 1 850 131 7 29 chr12 18880953 18881090 -124905365 - AluSc SINE Alu -175 134 1 23 54 0 0 chr12 18881444 18881481 -124904974 + AT_rich Low_complexity Low_complexity 1 37 0 297 266 16 0 chr12 18881583 18881647 -124904808 + polypyrimidine Low_complexity Low_complexity 3 67 0 369 0 0 0 chr12 18883642 18883683 -124902772 + (CA)n Simple_repeat Simple_repeat 2 42 0 6835 33 1 1 chr12 18887275 18888099 -124898356 - L1PA4 LINE L1 -3 6152 5329 440 291 5 3 chr12 18888244 18888364 -124898091 + MIR SINE MIR 57 178 -30 203 217 17 0 chr12 18888450 18888510 -124897945 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr12 18888542 18888570 -124897885 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 18889611 18889649 -124896806 + AT_rich Low_complexity Low_complexity 1 38 0 493 306 105 48 chr12 18891705 18892263 -124894192 - L2 LINE L2 -10 3303 2711 395 137 14 0 chr12 18892756 18892829 -124893626 + GA-rich Low_complexity Low_complexity 2 75 0 2034 162 29 6 chr12 18894025 18894365 -124892090 - MER7A DNA MER2_type 0 346 1 921 220 155 25 chr12 18895576 18895899 -124890556 - MLT1A1 LTR MaLR 0 365 1 303 73 0 0 chr12 18896516 18896557 -124889898 - L1PA7 LINE L1 -13 6141 6101 539 95 0 0 chr12 18896659 18896743 -124889712 - L1M1 LINE L1 -612 5542 5459 940 42 25 0 chr12 18896756 18896875 -124889580 + L1P LINE L1 4173 4294 -1852 25 0 0 0 chr12 18897202 18897227 -124889228 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 18897380 18897408 -124889047 + AT_rich Low_complexity Low_complexity 1 28 0 5165 87 8 20 chr12 18898164 18899046 -124887409 - L1P3 LINE L1 -694 5478 4608 579 309 70 31 chr12 18899027 18899517 -124886938 - L1MEc LINE L1 -4708 1688 1170 * 2043 139 3 0 chr12 18899517 18899818 -124886637 - AluSg SINE Alu -8 302 1 579 309 70 31 chr12 18899818 18899912 -124886543 - L1MEc LINE L1 -5226 1170 1081 21 57 0 0 chr12 18900130 18900165 -124886290 + AT_rich Low_complexity Low_complexity 1 35 0 1063 336 91 26 chr12 18903516 18904166 -124882289 + L2 LINE L2 2308 3002 -311 311 301 114 34 chr12 18904182 18904358 -124882097 + L2 LINE L2 3124 3313 0 1423 278 29 22 chr12 18904479 18904929 -124881526 - LTR16B LTR ERVL -11 453 1 316 236 0 73 chr12 18905597 18905676 -124880779 - L1MC4 LINE L1 -1339 6703 6633 2280 74 0 3 chr12 18905676 18905961 -124880494 - AluY SINE Alu -15 296 13 316 236 0 73 chr12 18905961 18905991 -124880464 - L1MC4 LINE L1 -1409 6633 6602 21 36 0 0 chr12 18906196 18906224 -124880231 + AT_rich Low_complexity Low_complexity 1 28 0 210 304 80 54 chr12 18907836 18907948 -124878507 - MIR SINE MIR -36 226 112 2556 36 3 0 chr12 18908177 18908482 -124877973 - AluYb8 SINE Alu -12 306 1 296 357 60 30 chr12 18908529 18908798 -124877657 + L2 LINE L2 2593 2869 -445 204 97 0 0 chr12 18909868 18909899 -124876556 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 2318 111 28 3 chr12 18909901 18910261 -124876194 - L1PB1 LINE L1 -10 6141 5773 1652 208 17 0 chr12 18961613 18961911 -124824544 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 18961914 18961944 -124824511 + AT_rich Low_complexity Low_complexity 1 30 0 214 325 38 0 chr12 18962317 18962397 -124824058 - L2 LINE L2 -8 3305 3223 * 517 288 63 14 chr12 18962391 18962613 -124823842 - L2 LINE L2 -733 2581 2349 2418 107 22 8 chr12 18962859 18963214 -124823241 - L1PB1 LINE L1 -2 6149 5787 195 42 0 0 chr12 18963214 18963238 -124823217 + (TG)n Simple_repeat Simple_repeat 2 25 0 225 0 0 0 chr12 18963258 18963283 -124823172 + (CA)n Simple_repeat Simple_repeat 2 26 0 3809 163 16 21 chr12 18963317 18963922 -124822533 - L1PB1 LINE L1 -360 5791 5184 405 0 0 0 chr12 18963922 18963967 -124822488 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3809 163 16 21 chr12 18963967 18964704 -124821751 - L1PB1 LINE L1 -967 5184 4461 3042 148 21 14 chr12 18964898 18965459 -124820996 - L1MA4 LINE L1 0 6300 5736 264 386 64 29 chr12 18965916 18966087 -124820368 + MER5A DNA MER1_type 11 187 -2 1371 179 55 34 chr12 18966311 18966602 -124819853 - AluJb SINE Alu -9 303 7 884 73 0 0 chr12 18967404 18967514 -124818941 - AluY SINE Alu -10 301 192 224 154 19 0 chr12 18968429 18968481 -124817974 + (TA)n Simple_repeat Simple_repeat 2 54 0 558 227 5 60 chr12 18969328 18969513 -124816942 - LOR1-int LTR ERV1 -6647 1473 1299 21 0 0 0 chr12 18970304 18970325 -124816130 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 18971347 18971375 -124815080 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr12 18972160 18972183 -124814272 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 198 237 105 26 chr12 18973056 18973132 -124813323 + MIR SINE MIR 80 161 -101 318 291 102 0 chr12 18973510 18973637 -124812818 + MIR SINE MIR 67 206 -56 561 264 30 124 chr12 18973648 18973896 -124812559 + MER101B LTR ERV1 1 212 -358 1542 156 201 6 chr12 18973896 18974254 -124812201 - MSTA LTR MaLR 0 428 1 561 264 30 124 chr12 18974254 18974335 -124812120 + MER101B LTR ERV1 212 299 -271 427 378 65 13 chr12 18978173 18978403 -124808052 - MIR SINE MIR 0 262 21 544 337 127 23 chr12 18978431 18978817 -124807638 - L3 LINE CR1 -104 1473 1048 1282 162 8 17 chr12 18979926 18980160 -124806295 + AluJb SINE Alu 70 301 -11 1332 160 0 9 chr12 18980368 18980587 -124805868 + AluJb SINE Alu 82 298 -14 25 0 0 0 chr12 18980637 18980662 -124805793 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 18981869 18981892 -124804563 + AT_rich Low_complexity Low_complexity 1 23 0 269 293 38 38 chr12 18984908 18985014 -124801441 + L2 LINE L2 3190 3295 -18 371 344 185 32 chr12 18986280 18987007 -124799448 - L2 LINE L2 0 3313 2483 427 333 79 50 chr12 18987724 18988066 -124798389 - MLT1K LTR MaLR -234 354 3 33 25 0 0 chr12 18988106 18988146 -124798309 + AT_rich Low_complexity Low_complexity 1 40 0 1820 90 9 100 chr12 18988146 18988467 -124797988 - AluSq SINE Alu -21 292 1 23 54 0 0 chr12 18988743 18988780 -124797675 + AT_rich Low_complexity Low_complexity 1 37 0 408 286 23 64 chr12 18988780 18989046 -124797409 + L1M4 LINE L1 2232 2486 -3660 22 35 0 0 chr12 18989210 18989239 -124797216 + AT_rich Low_complexity Low_complexity 1 29 0 40 37 0 0 chr12 18989348 18989402 -124797053 + AT_rich Low_complexity Low_complexity 1 54 0 322 235 17 92 chr12 18989430 18989549 -124796906 + L1MB5 LINE L1 3 112 -6430 3361 257 41 46 chr12 18989668 18989936 -124796519 + L1MB5 LINE L1 350 618 -5924 1796 142 26 3 chr12 18989936 18990239 -124796216 + AluSg SINE Alu 1 310 0 3361 257 41 46 chr12 18990239 18991271 -124795184 + L1MB5 LINE L1 618 1643 -4899 897 229 80 0 chr12 18991286 18991535 -124794920 + L1MB5 LINE L1 1509 1777 -4869 2072 158 36 46 chr12 18991669 18992223 -124794232 + MLT2A2 LTR ERVL 1 554 0 262 286 0 44 chr12 18992236 18992327 -124794128 + L1MB2 LINE L1 582 668 -5907 3038 174 25 9 chr12 18992400 18993036 -124793419 + L1MB2 LINE L1 1985 2630 -4016 1685 188 22 8 chr12 18993042 18993410 -124793045 + L1MB3 LINE L1 5807 6179 -4 3324 194 28 35 chr12 18993416 18994246 -124792209 + L1MB2 LINE L1 4449 5272 -1372 3853 210 40 35 chr12 18994250 18995497 -124790958 + L1MB2 LINE L1 5425 6668 -1 955 257 34 34 chr12 18995495 18995822 -124790633 + L1MB5 LINE L1 1767 2093 -4553 * 1039 253 108 35 chr12 18995921 18996730 -124789725 + L1MB5 LINE L1 2363 3227 -3417 2044 222 10 32 chr12 18996758 18996958 -124789497 + L1MB5 LINE L1 5977 6180 -492 2378 230 18 6 chr12 18996958 18997467 -124788988 - MLT2B2 LTR ERVL 0 515 1 2044 222 10 32 chr12 18997467 18997765 -124788690 + L1MB5 LINE L1 6180 6464 -208 463 250 110 0 chr12 18997768 18997904 -124788551 + L1MB5 LINE L1 6513 6663 -9 23 33 0 0 chr12 18997937 18997967 -124788488 + AT_rich Low_complexity Low_complexity 1 30 0 240 167 0 0 chr12 18999043 18999091 -124787364 + Alu SINE Alu 259 306 -2 266 365 62 15 chr12 19000160 19000500 -124785955 - L1MC/D LINE L1 -1911 5897 5542 690 268 61 45 chr12 19000576 19000822 -124785633 + MIR SINE MIR 13 262 0 307 358 72 46 chr12 19000923 19001525 -124784930 - L2 LINE L2 -183 3089 2467 1923 139 13 0 chr12 19001560 19001862 -124784593 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr12 19002027 19002052 -124784403 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1933 117 45 3 chr12 19002253 19002543 -124783912 + AluSx SINE Alu 2 303 -9 439 349 20 21 chr12 19002616 19002820 -124783635 - MIR SINE MIR -30 232 30 247 247 26 26 chr12 19004666 19004743 -124781712 - MIR SINE MIR 0 262 186 350 330 122 5 chr12 19005014 19005211 -124781244 - MIR SINE MIR -9 253 34 213 154 0 0 chr12 19005494 19005533 -124780922 + (CATA)n Simple_repeat Simple_repeat 2 40 0 348 64 0 0 chr12 19005541 19005588 -124780867 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr12 19006237 19006284 -124780171 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 19006339 19006361 -124780094 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr12 19006543 19006594 -124779861 + AT_rich Low_complexity Low_complexity 1 51 0 214 118 66 26 chr12 19007294 19007370 -124779085 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 28 48 0 0 chr12 19007377 19007419 -124779036 + AT_rich Low_complexity Low_complexity 1 42 0 212 339 79 22 chr12 19007620 19007809 -124778646 - MIR3 SINE MIR -7 201 3 301 281 78 39 chr12 19009255 19009383 -124777072 - MIR SINE MIR -39 223 91 * 821 238 26 22 chr12 19009381 19009612 -124776843 - MIR SINE MIR 0 262 31 186 346 50 40 chr12 19010218 19010319 -124776136 + L2 LINE L2 2987 3088 -184 33 43 0 0 chr12 19010536 19010583 -124775872 + AT_rich Low_complexity Low_complexity 1 47 0 870 171 94 0 chr12 19011388 19011569 -124774886 + L1PBa LINE L1 3 200 -6663 12012 171 70 7 chr12 19011569 19015763 -124770692 + L1PBa LINE L1 634 5089 -1773 764 295 0 0 chr12 19016065 19016255 -124770200 - MIR SINE MIR -33 229 40 771 326 164 27 chr12 19018863 19019564 -124766891 - L2 LINE L2 0 3313 2516 1890 129 11 11 chr12 19019568 19019899 -124766556 + AluSp SINE Alu 1 331 0 2253 90 0 0 chr12 19020431 19020742 -124765713 - AluYa5 SINE Alu 0 311 1 23 68 0 0 chr12 19021359 19021403 -124765052 + AT_rich Low_complexity Low_complexity 1 44 0 213 346 119 10 chr12 19022208 19022309 -124764146 + L2 LINE L2 2940 3051 -221 23 33 0 0 chr12 19023082 19023112 -124763343 + AT_rich Low_complexity Low_complexity 1 30 0 42052 50 7 4 chr12 19023568 19029692 -124756763 + L1PA4 LINE L1 1 6144 -11 218 336 88 9 chr12 19029741 19029854 -124756601 + MIR3 SINE MIR 83 204 -4 882 323 56 39 chr12 19030600 19031568 -124754887 + HAL1 LINE L1 1178 2161 -346 231 304 71 68 chr12 19031640 19031962 -124754493 + MLT1I LTR MaLR 73 395 -14 4311 214 20 9 chr12 19032044 19032943 -124753512 - MER49 LTR ERV1 0 923 15 3502 203 121 44 chr12 19033134 19033630 -124752825 + Tigger6a DNA MER2_type 4 461 -1136 2609 118 11 8 chr12 19033630 19034004 -124752451 + THE1C LTR MaLR 1 375 0 9644 112 33 43 chr12 19034004 19035600 -124750855 + THE1C-int LTR MaLR 1 1580 0 2644 101 5 8 chr12 19035600 19035976 -124750479 + THE1C LTR MaLR 1 375 0 3502 203 121 44 chr12 19035976 19036480 -124749975 + Tigger6a DNA MER2_type 460 1083 0 275 271 7 79 chr12 19036481 19036621 -124749834 + HAL1 LINE L1 2373 2502 -5 22 56 0 0 chr12 19036623 19036659 -124749796 + AT_rich Low_complexity Low_complexity 1 36 0 477 307 82 26 chr12 19036816 19037047 -124749408 - MIR SINE MIR -1 261 18 21 0 0 0 chr12 19037440 19037461 -124748994 + AT_rich Low_complexity Low_complexity 1 21 0 183 357 9 45 chr12 19037487 19037599 -124748856 + MER5A DNA MER1_type 2 109 -80 1155 206 12 4 chr12 19037737 19037904 -124748551 - L1MA10 LINE L1 -5 6329 6158 207 0 0 0 chr12 19037904 19037927 -124748528 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1155 206 12 4 chr12 19037927 19038016 -124748439 - L1MA10 LINE L1 -176 6158 6071 26 100 0 0 chr12 19038471 19038541 -124747914 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr12 19038769 19038791 -124747664 + AT_rich Low_complexity Low_complexity 1 22 0 362 159 0 0 chr12 19039150 19039213 -124747242 - L1MA6 LINE L1 -11 6289 6227 207 0 0 0 chr12 19039426 19039449 -124747006 + (CA)n Simple_repeat Simple_repeat 1 23 0 263 209 23 12 chr12 19039454 19039540 -124746915 + L1MC4 LINE L1 6617 6703 -1339 876 288 74 22 chr12 19039547 19039737 -124746718 - L1M4 LINE L1 -3617 2765 2586 2060 105 3 35 chr12 19039737 19040052 -124746403 - AluSc SINE Alu -4 305 1 876 288 74 22 chr12 19040052 19040504 -124745951 - L1M4 LINE L1 -3796 2586 2084 297 0 0 0 chr12 19040620 19040653 -124745802 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 171 0 0 chr12 19040653 19040688 -124745767 + (TA)n Simple_repeat Simple_repeat 2 36 0 1332 94 6 6 chr12 19040924 19041105 -124745350 - AluSq SINE Alu -20 293 113 1237 272 80 12 chr12 19041116 19041678 -124744777 - L1M4 LINE L1 -2512 3634 3035 225 167 42 21 chr12 19041678 19041726 -124744729 + CT-rich Low_complexity Low_complexity 3 51 0 1536 241 69 20 chr12 19041872 19042564 -124743891 + L1MB8 LINE L1 4790 5528 -656 1445 114 0 0 chr12 19042579 19042789 -124743666 - L1PA13 LINE L1 -84 6079 5870 2034 196 125 51 chr12 19042791 19043398 -124743057 + L1MB8 LINE L1 5514 6165 -13 344 274 18 73 chr12 19043838 19044002 -124742453 + L2 LINE L2 3159 3313 0 22 0 0 0 chr12 19044346 19044368 -124742087 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr12 19044559 19044619 -124741836 + AT_rich Low_complexity Low_complexity 1 60 0 27 29 0 0 chr12 19044777 19044811 -124741644 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr12 19045025 19045054 -124741401 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 19046327 19046350 -124740105 + AT_rich Low_complexity Low_complexity 1 23 0 706 215 17 35 chr12 19046794 19046966 -124739489 - MER45A DNA AcHobo -9 169 1 264 319 59 25 chr12 19046984 19047103 -124739352 - MIR SINE MIR -80 182 60 204 299 0 30 chr12 19048642 19048709 -124737746 - L2 LINE L2 -4 3268 3204 23 0 0 0 chr12 19048991 19049014 -124737441 + AT_rich Low_complexity Low_complexity 1 23 0 337 323 57 31 chr12 19049452 19049644 -124736811 + L2 LINE L2 2244 2440 -874 545 78 0 0 chr12 19049791 19049868 -124736587 - AluY SINE Alu -58 253 177 27 62 0 0 chr12 19050797 19050845 -124735610 + AT_rich Low_complexity Low_complexity 1 48 0 350 292 185 0 chr12 19051838 19051968 -124734487 - L2 LINE L2 -1 3312 3159 21 57 0 0 chr12 19052262 19052297 -124734158 + AT_rich Low_complexity Low_complexity 1 35 0 185 220 0 34 chr12 19052419 19052438 -124734017 + GA-rich Low_complexity Low_complexity 4 22 -38 2336 57 40 0 chr12 19052438 19052735 -124733720 + AluY SINE Alu 1 309 -2 185 220 0 34 chr12 19052735 19052774 -124733681 + GA-rich Low_complexity Low_complexity 22 60 0 22 35 0 0 chr12 19053668 19053697 -124732758 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 19053978 19053998 -124732457 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 271 385 26 17 chr12 19054298 19054415 -124732040 - L2 LINE L2 0 3272 3155 1358 275 123 16 chr12 19054429 19054917 -124731538 - MLT1F LTR MaLR -2 540 1 2550 39 0 0 chr12 19055634 19055939 -124730516 - AluY SINE Alu -6 305 1 24 0 0 0 chr12 19056058 19056082 -124730373 + AT_rich Low_complexity Low_complexity 1 24 0 291 157 0 0 chr12 19057970 19058021 -124728434 + CT-rich Low_complexity Low_complexity 2 52 0 200 167 0 56 chr12 19058013 19058067 -124728388 + T-rich Low_complexity Low_complexity 3 53 0 * 257 262 58 29 chr12 19058247 19058350 -124728105 + MIR SINE MIR 89 194 -68 25 31 0 0 chr12 19058651 19058683 -124727772 + AT_rich Low_complexity Low_complexity 1 32 0 558 311 110 23 chr12 19058750 19059049 -124727406 - L3 LINE CR1 -36 1541 1217 22 0 0 0 chr12 19061141 19061163 -124725292 + AT_rich Low_complexity Low_complexity 1 22 0 1330 166 143 21 chr12 19061400 19061747 -124724708 + MSTA LTR MaLR 1 367 -29 451 333 33 33 chr12 19064804 19065044 -124721411 - L1MDa LINE L1 -4589 1951 1712 4338 201 32 58 chr12 19065045 19065106 -124721349 - L1M2 LINE L1 -521 5776 5715 1373 163 56 14 chr12 19065106 19065394 -124721061 - L1MA8 LINE L1 -15 6276 5977 4338 201 32 58 chr12 19065394 19067369 -124719086 - L1M2 LINE L1 -582 5715 3818 400 286 128 50 chr12 19067394 19067749 -124718706 - L1MDa LINE L1 -4863 1667 1269 22 35 0 0 chr12 19067774 19067803 -124718652 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 19068384 19068405 -124718050 + AT_rich Low_complexity Low_complexity 1 21 0 233 356 17 17 chr12 19068628 19068746 -124717709 - MIR SINE MIR -71 191 74 21 71 0 0 chr12 19068838 19068880 -124717575 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr12 19068986 19069030 -124717425 + AT_rich Low_complexity Low_complexity 1 44 0 341 246 40 62 chr12 19069754 19069978 -124716477 + MER113 DNA MER1_type? 4 222 -299 2239 49 3 0 chr12 19071073 19071358 -124715097 + L1PA5 LINE L1 5866 6151 -3 3978 240 51 22 chr12 19071816 19073653 -124712802 + L1M4 LINE L1 3902 5794 -384 385 259 61 0 chr12 19073661 19073792 -124712663 + L1M4 LINE L1 4781 4919 -1227 233 167 62 0 chr12 19073843 19073891 -124712564 + L1M4 LINE L1 2300 2350 -3796 725 180 70 0 chr12 19073954 19074126 -124712329 - L1MA7 LINE L1 0 6291 6108 441 274 19 0 chr12 19074122 19074279 -124712176 - L1MDa LINE L1 -3890 2650 2491 * 20579 58 3 1 chr12 19074286 19076922 -124709533 + L1P LINE L1 334 2974 -3172 214 186 51 0 chr12 19077156 19077215 -124709240 + (TA)n Simple_repeat Simple_repeat 2 63 0 213 154 0 0 chr12 19077216 19077255 -124709200 + (TG)n Simple_repeat Simple_repeat 2 40 0 822 241 77 14 chr12 19077641 19077861 -124708594 - MIR SINE MIR 0 262 29 350 270 34 62 chr12 19078846 19079024 -124707431 + MIR SINE MIR 84 256 -6 449 290 37 67 chr12 19082061 19082284 -124704171 - MLT1H1 LTR MaLR -310 245 25 262 156 31 0 chr12 19082512 19082576 -124703879 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 78 0 0 chr12 19083633 19083684 -124702771 + AT_rich Low_complexity Low_complexity 1 51 0 25 95 0 0 chr12 19084190 19084264 -124702191 + AT_rich Low_complexity Low_complexity 1 74 0 23 68 0 0 chr12 19085389 19085433 -124701022 + AT_rich Low_complexity Low_complexity 1 44 0 2335 103 130 8 chr12 19086145 19086544 -124699911 - LTR7 LTR ERV1 -2 448 1 244 345 0 18 chr12 19087018 19087131 -124699324 + GA-rich Low_complexity Low_complexity 3 113 0 33 25 0 0 chr12 19087582 19087622 -124698833 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr12 19087740 19087762 -124698693 + AT_rich Low_complexity Low_complexity 1 22 0 4831 260 76 41 chr12 19087862 19089748 -124696707 + L1M4b LINE L1 11 1976 -4879 1769 132 4 0 chr12 19089796 19090053 -124696402 + AluSx SINE Alu 17 274 -38 507 189 98 14 chr12 19090275 19090418 -124696037 + ORSL DNA AcHobo 2 156 -119 24 0 0 0 chr12 19091051 19091075 -124695380 + AT_rich Low_complexity Low_complexity 1 24 0 410 346 0 39 chr12 19092021 19092200 -124694255 + L2 LINE L2 1813 1984 -1330 1087 303 141 12 chr12 19092271 19092760 -124693695 + L2 LINE L2 2175 2726 -588 798 267 53 50 chr12 19092772 19093169 -124693286 - L2 LINE L2 -734 2580 2183 509 290 170 26 chr12 19093134 19093469 -124692986 + L2 LINE L2 2688 3085 -228 * 1791 124 0 33 chr12 19093949 19094223 -124692232 - AluSx SINE Alu -11 301 37 270 306 142 35 chr12 19094325 19094586 -124691869 + L3b LINE CR1 1295 1583 0 416 194 20 0 chr12 19094721 19094819 -124691636 + CT-rich Low_complexity Low_complexity 1 100 0 327 49 0 0 chr12 19094847 19094888 -124691567 + (TC)n Simple_repeat Simple_repeat 1 41 0 1572 178 3 28 chr12 19094889 19095176 -124691279 - AluJb SINE Alu -32 280 1 25 0 0 0 chr12 19095267 19095292 -124691163 + AT_rich Low_complexity Low_complexity 1 25 0 1738 202 64 13 chr12 19095384 19095761 -124690694 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr12 19096630 19096658 -124689797 + AT_rich Low_complexity Low_complexity 1 28 0 258 299 120 0 chr12 19097651 19097768 -124688687 + LTR16A LTR ERVL 299 429 -21 814 236 137 22 chr12 19097833 19098146 -124688309 + LTR52 LTR ERVL 3 351 -70 599 229 25 0 chr12 19098184 19098306 -124688149 - MER45A DNA AcHobo -52 126 2 269 340 51 6 chr12 19098654 19098810 -124687645 + L2 LINE L2 997 1159 -2155 335 287 180 41 chr12 19098865 19099109 -124687346 + L2 LINE L2 1636 1913 -1401 1126 296 53 78 chr12 19099109 19099916 -124686539 + L2 LINE L2 2442 3229 -84 21 57 0 0 chr12 19101075 19101110 -124685345 + AT_rich Low_complexity Low_complexity 1 35 0 375 298 71 14 chr12 19102909 19103050 -124683405 + MIR SINE MIR 19 167 -95 399 368 138 11 chr12 19104014 19104457 -124681998 + L2 LINE L2 1812 2310 -1004 1160 170 16 5 chr12 19104796 19104990 -124681465 + AluJb SINE Alu 4 199 -113 898 112 12 59 chr12 19104991 19105160 -124681295 + L1PA6 LINE L1 5992 6152 -2 1323 76 6 0 chr12 19105160 19105332 -124681123 + AluSp SINE Alu 120 292 -21 824 192 0 7 chr12 19105335 19105486 -124680969 + AluJo/FRAM SINE Alu 137 286 -16 440 291 101 64 chr12 19105506 19105974 -124680481 + L2 LINE L2 2700 3177 -95 1012 152 0 0 chr12 19106370 19106521 -124679934 + AluSg/x SINE Alu 135 285 -25 3195 195 123 51 chr12 19106678 19108187 -124678268 + MER52A LTR ERV1 1 1750 -5 315 325 9 18 chr12 19108646 19108760 -124677695 - L2 LINE L2 -2 3311 3199 22 0 0 0 chr12 19109344 19109366 -124677089 + AT_rich Low_complexity Low_complexity 1 22 0 694 231 0 20 chr12 19109413 19109560 -124676895 - FRAM SINE Alu -13 163 20 488 245 94 61 chr12 19109817 19110029 -124676426 - MER20 DNA MER1_type 0 219 1 270 359 88 24 chr12 19110679 19110849 -124675606 + MIR3 SINE MIR 13 193 -15 228 202 36 24 chr12 19112601 19112685 -124673770 + (TA)n Simple_repeat Simple_repeat 2 86 0 1062 331 90 46 chr12 19114291 19115514 -124670941 + L2 LINE L2 2022 3295 -18 263 114 71 0 chr12 19115689 19115759 -124670696 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 24 32 0 0 chr12 19116238 19116269 -124670186 + AT_rich Low_complexity Low_complexity 1 31 0 230 296 122 32 chr12 19116460 19116704 -124669751 + MLT1J LTR MaLR 172 481 -30 22 0 0 0 chr12 19116833 19116855 -124669600 + AT_rich Low_complexity Low_complexity 1 22 0 525 225 58 14 chr12 19116876 19117014 -124669441 + L1MB7 LINE L1 5998 6141 -43 407 41 0 0 chr12 19117005 19117054 -124669401 - L1PA2 LINE L1 -875 5271 5223 * 7785 12 1 0 chr12 19117054 19117948 -124668507 + L1PA2 LINE L1 5260 6155 0 186 43 0 0 chr12 19118612 19118635 -124667820 + (TA)n Simple_repeat Simple_repeat 2 24 0 2161 91 27 0 chr12 19118776 19119072 -124667383 - AluSq SINE Alu -9 304 1 215 235 0 20 chr12 19119152 19119203 -124667252 + L2 LINE L2 3264 3313 0 308 338 78 39 chr12 19122481 19122635 -124663820 + MIR SINE MIR 86 245 -17 1511 169 6 60 chr12 19125340 19125654 -124660801 - AluJb SINE Alu -15 297 1 1773 117 224 8 chr12 19126233 19126585 -124659870 - MSTA LTR MaLR 0 428 1 2291 109 0 6 chr12 19127443 19127756 -124658699 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr12 19129601 19129631 -124656824 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr12 19130907 19130954 -124655501 + AT_rich Low_complexity Low_complexity 1 47 0 317 24 24 0 chr12 19131813 19131855 -124654600 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 11 23 23 chr12 19132200 19132288 -124654167 + L1PA4 LINE L1 6068 6155 0 279 133 0 0 chr12 19132559 19132604 -124653851 + (TA)n Simple_repeat Simple_repeat 2 46 0 187 361 12 0 chr12 19133121 19133204 -124653251 - MER5A DNA MER1_type -51 138 55 1245 115 0 26 chr12 19134806 19134997 -124651458 + L1PA14 LINE L1 5967 6152 -9 1942 146 17 0 chr12 19135579 19135867 -124650588 + AluJb SINE Alu 1 293 -19 3871 179 27 14 chr12 19136304 19136931 -124649524 + L1MA10 LINE L1 5525 6166 -168 321 26 0 0 chr12 19136931 19136969 -124649486 + (CA)n Simple_repeat Simple_repeat 2 39 0 3871 179 27 14 chr12 19136969 19137130 -124649325 + L1MA10 LINE L1 6166 6323 -11 21130 42 9 0 chr12 19137609 19141054 -124645401 + L1PA4 LINE L1 2697 6155 0 29 0 0 0 chr12 19142585 19142614 -124643841 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19143332 19143364 -124643091 + AT_rich Low_complexity Low_complexity 1 32 0 43 47 0 0 chr12 19143778 19143842 -124642613 + AT_rich Low_complexity Low_complexity 1 64 0 299 294 42 17 chr12 19143883 19144002 -124642453 - MIR SINE MIR -3 259 138 2274 105 0 0 chr12 19144053 19144349 -124642106 + AluSg SINE Alu 3 298 -12 423 132 0 0 chr12 19145246 19145314 -124641141 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 179 51 90 chr12 19146006 19146084 -124640371 + MER110A LTR ERV1 41 115 -353 894 288 67 72 chr12 19146101 19146214 -124640241 - MLT1E2 LTR MaLR -9 617 505 1789 167 3 3 chr12 19146214 19146520 -124639935 - AluSx SINE Alu 0 306 1 894 288 67 72 chr12 19146520 19147014 -124639441 - MLT1E2 LTR MaLR -121 505 49 320 296 59 46 chr12 19147202 19147478 -124638977 + MER110A LTR ERV1 218 491 0 228 319 11 43 chr12 19148307 19148401 -124638054 - MIR SINE MIR -110 152 62 425 329 99 63 chr12 19148412 19148450 -124638005 + HERV16 LTR ERVL 189 224 -4772 811 278 32 0 chr12 19148450 19148666 -124637789 - MER58A DNA MER1_type -1 223 1 425 329 99 63 chr12 19148666 19149313 -124637142 + HERV16 LTR ERVL 224 899 -4097 3335 221 32 5 chr12 19149500 19150290 -124636165 - L1M2 LINE L1 -1752 4394 3584 * 3406 225 29 14 chr12 19150269 19151157 -124635298 + L1M2 LINE L1 4381 5282 -864 370 138 56 50 chr12 19151161 19151321 -124635134 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 1454 204 114 8 chr12 19151342 19151729 -124634726 + L1M2 LINE L1 5313 5740 -572 448 343 35 68 chr12 19151742 19152171 -124634284 + L1MA4A LINE L1 15 429 -6739 2047 265 37 31 chr12 19152506 19153713 -124632742 + L1MA4A LINE L1 1619 2843 -4325 578 278 18 9 chr12 19154176 19154403 -124632052 + L1PA15-16 LINE L1 2897 3125 -4440 2984 290 118 33 chr12 19154640 19156214 -124630241 + L1M2b LINE L1 1 1708 -5501 318 321 115 36 chr12 19156215 19156380 -124630075 + L1M2b LINE L1 1210 1387 -5822 3009 237 40 16 chr12 19156383 19156804 -124629651 + L1PA15-16 LINE L1 3077 3486 -4079 2010 126 3 7 chr12 19156804 19157090 -124629365 + AluSx SINE Alu 1 285 -27 3009 237 40 16 chr12 19157090 19158054 -124628401 + L1PA15-16 LINE L1 3486 4588 -2977 328 211 39 0 chr12 19158058 19158162 -124628293 + GA-rich Low_complexity Low_complexity 1 108 0 17766 126 53 14 chr12 19158286 19158947 -124627508 + MER41C-int LTR ERV1 3 637 -7119 402 39 0 0 chr12 19158947 19158999 -124627456 + (CA)n Simple_repeat Simple_repeat 2 53 0 17766 126 53 14 chr12 19158999 19161180 -124625275 + MER41C-int LTR ERV1 637 2956 -4800 1251 131 5 5 chr12 19161166 19161364 -124625091 + MER41C-int LTR ERV1 4244 4441 -3315 * 9126 88 16 5 chr12 19161357 19162588 -124623867 + MER41C-int LTR ERV1 5151 6395 -1361 3817 91 33 4 chr12 19162579 19163118 -124623337 + MER41C-int LTR ERV1 7199 7753 -3 * 3128 152 29 16 chr12 19163147 19163694 -124622761 + MER41C LTR ERV1 1 554 0 8010 203 40 9 chr12 19163710 19164162 -124622293 + L1MA4A LINE L1 4231 4667 -2500 369 43 0 0 chr12 19164162 19164209 -124622246 + (CA)n Simple_repeat Simple_repeat 2 48 0 354 23 0 0 chr12 19164208 19164251 -124622204 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 8010 203 40 9 chr12 19164209 19165711 -124620744 + L1MA4A LINE L1 4667 6203 -964 2076 160 42 5 chr12 19165833 19166233 -124620222 + L1MA4A LINE L1 6674 7088 -236 8178 165 47 13 chr12 19166234 19167731 -124618724 - Tigger1 DNA MER2_type -867 1551 3 2156 106 7 0 chr12 19167755 19168048 -124618407 + AluSg SINE Alu 2 296 -14 3660 204 66 13 chr12 19168070 19169201 -124617254 + L1M2 LINE L1 4262 5458 -743 329 158 12 0 chr12 19169323 19169405 -124617050 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 719 345 62 17 chr12 19169439 19169940 -124616515 + HERV16 LTR ERVL 1688 2260 -2918 256 386 102 14 chr12 19170272 19170567 -124615888 + L2 LINE L2 2549 2869 -445 201 356 35 0 chr12 19170819 19170934 -124615521 + MIR SINE MIR 13 131 -131 2237 173 20 43 chr12 19170958 19171397 -124615058 - MSTB1 LTR MaLR 0 432 4 6602 221 70 12 chr12 19171400 19172955 -124613500 - MSTB1-int LTR MaLR 0 1651 6 2003 190 38 14 chr12 19172955 19173377 -124613078 - MSTB1 LTR MaLR 0 432 1 186 354 15 0 chr12 19173591 19173656 -124612799 + L2 LINE L2 3193 3258 -14 184 179 0 0 chr12 19175286 19175314 -124611141 - MIR SINE MIR -26 236 209 210 189 14 27 chr12 19175342 19175416 -124611039 + (TA)n Simple_repeat Simple_repeat 2 74 0 396 288 32 0 chr12 19175458 19175583 -124610872 - MIR SINE MIR -122 140 12 2182 110 52 25 chr12 19175792 19176157 -124610298 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr12 19177249 19177280 -124609175 + AT_rich Low_complexity Low_complexity 1 31 0 252 122 0 0 chr12 19179735 19179776 -124606679 - L2 LINE L2 -1 3312 3272 23 68 0 0 chr12 19180482 19180526 -124605929 + AT_rich Low_complexity Low_complexity 1 44 0 210 193 0 0 chr12 19181462 19181519 -124604936 + (TA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr12 19182195 19182216 -124604239 + AT_rich Low_complexity Low_complexity 1 21 0 319 239 11 65 chr12 19183021 19183113 -124603342 + MER8 DNA MER2_type 1 87 -152 1913 248 95 15 chr12 19183136 19183737 -124602718 - MER82 DNA MER2_type -4 649 1 454 353 71 50 chr12 19183934 19184690 -124601765 - L2 LINE L2 -8 3305 2535 315 336 8 16 chr12 19184726 19184854 -124601601 - MIR SINE MIR -112 150 24 1483 195 0 10 chr12 19185065 19185357 -124601098 - L1PA16 LINE L1 -11 6155 5867 189 74 0 0 chr12 19185497 19185524 -124600931 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1810 153 11 3 chr12 19185526 19185808 -124600647 - AluSq SINE Alu -29 284 1 1903 238 51 30 chr12 19185878 19186450 -124600005 - L1MD3 LINE L1 -15 7980 7397 432 211 33 0 chr12 19186470 19186560 -124599895 - MLT1F1 LTR MaLR -470 97 5 648 278 17 0 chr12 19186563 19186743 -124599712 - L1MD3 LINE L1 -716 7279 7097 2141 80 0 4 chr12 19186941 19187215 -124599240 + AluY SINE Alu 34 306 -5 243 61 0 0 chr12 19187694 19187727 -124598728 + (CA)n Simple_repeat Simple_repeat 2 34 0 195 156 0 0 chr12 19189459 19189491 -124596964 - L2 LINE L2 -17 3296 3265 512 283 151 5 chr12 19189513 19189718 -124596737 + MIR SINE MIR 28 262 0 24 53 0 0 chr12 19189827 19189865 -124596590 + AT_rich Low_complexity Low_complexity 1 38 0 211 124 66 25 chr12 19189963 19190084 -124596371 + (TA)n Simple_repeat Simple_repeat 2 127 0 468 372 53 13 chr12 19190446 19190750 -124595705 + L2 LINE L2 2538 2853 -461 197 204 0 45 chr12 19191190 19191234 -124595221 + MIR SINE MIR 197 238 -24 22 35 0 0 chr12 19191288 19191317 -124595138 + AT_rich Low_complexity Low_complexity 1 29 0 1305 272 24 62 chr12 19192034 19192453 -124594002 - MER70B LTR ERVL -162 416 14 294 148 0 0 chr12 19192683 19192737 -124593718 + (CA)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr12 19193753 19193776 -124592679 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr12 19195021 19195070 -124591385 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr12 19196657 19196689 -124589766 + AT_rich Low_complexity Low_complexity 1 32 0 264 30 0 0 chr12 19196968 19197001 -124589454 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 19198449 19198470 -124587985 + AT_rich Low_complexity Low_complexity 1 21 0 198 308 111 26 chr12 19198540 19198657 -124587798 + MIR SINE MIR 61 187 -75 1149 211 81 36 chr12 19199044 19199352 -124587103 - MER2 DNA MER2_type -23 322 1 348 239 138 73 chr12 19200453 19200742 -124585713 - L1ME3A LINE L1 0 6170 5863 355 265 142 37 chr12 19201071 19201233 -124585222 + MER5A DNA MER1_type 9 187 -2 1893 211 60 16 chr12 19201460 19201944 -124584511 - MLT1D LTR MaLR 0 505 1 267 394 64 42 chr12 19202382 19202680 -124583775 - L2 LINE L2 -344 2970 2680 1675 194 0 16 chr12 19202680 19202984 -124583471 + AluJo SINE Alu 1 299 -13 267 394 64 42 chr12 19202984 19203279 -124583176 - L2 LINE L2 -634 2680 2364 279 295 48 19 chr12 19203465 19203570 -124582885 + L2 LINE L2 3191 3298 -15 578 286 78 10 chr12 19203979 19204171 -124582284 + MIR SINE MIR 32 236 -26 21 0 0 0 chr12 19204171 19204192 -124582263 + AT_rich Low_complexity Low_complexity 1 21 0 267 79 0 0 chr12 19205058 19205096 -124581359 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 19205321 19205343 -124581112 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2106 117 0 0 chr12 19205350 19205633 -124580822 - AluSx SINE Alu -29 283 1 189 269 19 0 chr12 19205931 19205983 -124580472 - L2 LINE L2 0 3313 3261 1808 178 7 0 chr12 19206195 19206499 -124579956 + AluJo SINE Alu 1 306 -6 1079 265 158 33 chr12 19206692 19207820 -124578635 + L1ME3A LINE L1 4890 6164 -6 26 0 0 0 chr12 19207907 19207933 -124578522 + AT_rich Low_complexity Low_complexity 1 26 0 470 305 120 6 chr12 19207956 19208123 -124578332 - MIR SINE MIR -58 204 19 1040 261 68 32 chr12 19208159 19208569 -124577886 - MLT1C LTR MaLR -1 466 42 23 0 0 0 chr12 19208847 19208870 -124577585 + AT_rich Low_complexity Low_complexity 1 23 0 461 347 86 0 chr12 19209511 19209733 -124576722 - MIR SINE MIR -15 247 7 504 261 93 101 chr12 19209908 19210681 -124575774 + LTR41 LTR ERVL 1 767 -6 25 0 0 0 chr12 19211425 19211450 -124575005 + AT_rich Low_complexity Low_complexity 1 25 0 215 287 184 11 chr12 19211616 19211703 -124574752 - L3b LINE CR1 -147 1436 1335 31 0 0 0 chr12 19211999 19212030 -124574425 + AT_rich Low_complexity Low_complexity 1 31 0 230 233 20 7 chr12 19213327 19213477 -124572978 + (TA)n Simple_repeat Simple_repeat 2 153 0 11709 199 35 13 chr12 19214577 19218360 -124568095 - L1MA5 LINE L1 -5 6295 2419 3804 173 32 17 chr12 19218410 19219596 -124566859 + L1MA8 LINE L1 4874 6072 -219 * 6518 165 35 30 chr12 19219592 19220981 -124565474 - L1P3 LINE L1 -4734 1141 67 2270 68 0 14 chr12 19220981 19221277 -124565178 - AluY SINE Alu -1 310 19 6518 165 35 30 chr12 19221277 19221345 -124565110 - L1P3 LINE L1 -5808 67 1 327 150 88 0 chr12 19221343 19221423 -124565032 + L1MA8 LINE L1 6057 6143 -148 * 1800 168 98 21 chr12 19221424 19221842 -124564613 - LTR7 LTR ERV1 0 450 1 3332 111 8 10 chr12 19221842 19222364 -124564091 - HERVH LTR ERV1 0 7713 7193 2949 202 28 36 chr12 19222349 19222966 -124563489 - HERVH LTR ERV1 -2693 5020 4408 * 2341 71 3 3 chr12 19222966 19223260 -124563195 + AluY SINE Alu 1 294 -17 2949 202 28 36 chr12 19223260 19223355 -124563100 - HERVH LTR ERV1 -3305 4408 4314 3871 11 0 0 chr12 19223452 19223892 -124562563 - L1PA2 LINE L1 -4 6151 5712 11107 29 5 0 chr12 19223892 19225225 -124561230 + L1P LINE L1 3194 4532 -1614 8075 215 16 16 chr12 19225237 19227288 -124559167 - HERVH LTR ERV1 -3468 5148 2255 2107 87 75 83 chr12 19227288 19227689 -124558766 - LTR14B LTR ERVK 0 608 1 8333 142 55 37 chr12 19227692 19229587 -124556868 - HERVH LTR ERV1 -5454 2259 1 1919 165 96 21 chr12 19229587 19230006 -124556449 - LTR7 LTR ERV1 0 450 1 461 163 111 15 chr12 19230006 19230141 -124556314 + L1MA8 LINE L1 6140 6287 -4 25 0 0 0 chr12 19230367 19230392 -124556063 + AT_rich Low_complexity Low_complexity 1 25 0 280 119 34 0 chr12 19230893 19230952 -124555503 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1315 244 37 26 chr12 19231021 19231369 -124555086 + MLT1B LTR MaLR 10 361 -29 587 371 63 43 chr12 19231434 19232033 -124554422 + L2 LINE L2 186 796 -2518 1735 199 11 20 chr12 19232046 19232397 -124554058 - MLT1A1 LTR MaLR -13 352 5 1459 259 62 36 chr12 19232585 19235080 -124551375 - L1MDa LINE L1 -3831 2813 23 2196 61 44 10 chr12 19235196 19235490 -124550965 - AluY SINE Alu -7 304 1 1182 260 24 68 chr12 19235727 19236139 -124550316 - MSTD LTR MaLR -2 394 1 25 51 0 0 chr12 19236623 19236662 -124549793 + AT_rich Low_complexity Low_complexity 1 39 0 413 0 39 0 chr12 19237875 19237927 -124548528 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 188 292 14 28 chr12 19238774 19238846 -124547609 + L2 LINE L2 2888 2958 -314 191 340 109 39 chr12 19240165 19240477 -124545978 - L2 LINE L2 -725 2589 2256 2688 266 37 41 chr12 19241112 19242591 -124543864 + L1MD2 LINE L1 4661 6127 -232 357 325 35 0 chr12 19243942 19244056 -124542399 + L2 LINE L2 3192 3309 -4 21 36 0 0 chr12 19244186 19244214 -124542241 + AT_rich Low_complexity Low_complexity 1 28 0 255 180 11 45 chr12 19244538 19244627 -124541828 + GA-rich Low_complexity Low_complexity 2 87 0 275 315 23 2 chr12 19244803 19244902 -124541553 - MIR SINE MIR -68 140 41 277 298 111 29 chr12 19244908 19245079 -124541376 + MIR SINE MIR 64 248 -14 1197 235 131 75 chr12 19247162 19248066 -124538389 + LTR1B LTR ERV1 1 1020 0 26 30 0 0 chr12 19248649 19248682 -124537773 + AT_rich Low_complexity Low_complexity 1 33 0 463 297 36 42 chr12 19250395 19250587 -124535868 - MIR SINE MIR -37 225 35 234 0 0 0 chr12 19250617 19250643 -124535812 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3735 16 0 2 chr12 19250643 19251076 -124535379 - L1PA2 LINE L1 -13 6142 5711 21 0 0 0 chr12 19252306 19252327 -124534128 + AT_rich Low_complexity Low_complexity 1 21 0 667 351 22 36 chr12 19253472 19253717 -124532738 + HERVL LTR ERVL 4853 5089 -565 2002 109 21 0 chr12 19253717 19254001 -124532454 - AluY SINE Alu -21 290 1 667 351 22 36 chr12 19254001 19254253 -124532202 + HERVL LTR ERVL 5089 5343 -311 483 282 66 28 chr12 19254473 19254654 -124531801 + LTR33 LTR ERVL 8 195 -326 1531 247 66 18 chr12 19255144 19255819 -124530636 + L1MCa LINE L1 2339 3046 -3380 811 208 6 0 chr12 19255839 19255998 -124530457 + FRAM SINE Alu 8 167 -9 2705 85 6 0 chr12 19256008 19256361 -124530094 - THE1A LTR MaLR 0 355 1 8798 116 139 1 chr12 19256361 19256830 -124529625 - THE1A-int LTR MaLR 0 1580 1177 210 37 0 0 chr12 19256830 19256857 -124529598 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 8798 116 139 1 chr12 19256857 19257776 -124528679 - THE1A-int LTR MaLR -403 1177 1 2315 122 32 0 chr12 19257776 19258120 -124528335 - THE1A LTR MaLR 0 355 1 1261 224 86 65 chr12 19258136 19258377 -124528078 + L1MCa LINE L1 3075 3309 -3117 2021 127 13 3 chr12 19258377 19258676 -124527779 - AluSx SINE Alu -9 303 2 1261 224 86 65 chr12 19258676 19259037 -124527418 + L1MCa LINE L1 3309 3690 -2736 * 1705 185 65 3 chr12 19259034 19259417 -124527038 + L1MC1 LINE L1 5926 6332 -1 371 225 55 39 chr12 19259434 19259616 -124526839 + L1MEc LINE L1 2445 2614 -3926 * 587 261 130 15 chr12 19259591 19259990 -124526465 + L1MEc LINE L1 3568 4012 -2528 362 194 14 0 chr12 19260166 19260238 -124526217 + MSTA LTR MaLR 1 73 -355 3180 164 5 55 chr12 19260238 19260860 -124525595 + MSTA-int LTR MaLR 1061 1651 0 2191 163 33 37 chr12 19260861 19260891 -124525564 + MSTA LTR MaLR 2 31 -397 1895 85 111 4 chr12 19260891 19261162 -124525293 - AluYa8 SINE Alu -10 300 1 2191 163 33 37 chr12 19261162 19261560 -124524895 + MSTA LTR MaLR 31 428 0 794 224 66 76 chr12 19261563 19261867 -124524588 - LTR52 LTR ERVL -98 323 23 1898 155 11 33 chr12 19261908 19261957 -124524498 - L1MB1 LINE L1 0 6168 6119 1768 164 3 20 chr12 19261957 19262255 -124524200 - AluSx SINE Alu -19 293 1 1898 155 11 33 chr12 19262255 19262567 -124523888 - L1MB1 LINE L1 -49 6119 5815 256 168 84 0 chr12 19262637 19262732 -124523723 + (TA)n Simple_repeat Simple_repeat 1 103 0 189 107 33 74 chr12 19262749 19262871 -124523584 + (TTATA)n Simple_repeat Simple_repeat 1 117 0 324 213 61 6 chr12 19262875 19263039 -124523416 + (TA)n Simple_repeat Simple_repeat 2 174 0 1944 199 38 59 chr12 19263039 19263769 -124522686 - L1MB1 LINE L1 -391 5777 5050 1952 128 68 11 chr12 19263769 19264122 -124522333 + THE1C LTR MaLR 3 375 0 1944 199 38 59 chr12 19264122 19264308 -124522147 - L1MB1 LINE L1 -1118 5050 4862 * 2573 192 23 0 chr12 19264299 19264826 -124521629 + L1MEc LINE L1 4181 4719 -1821 683 173 33 61 chr12 19264830 19265359 -124521096 + L1MA7 LINE L1 5412 6046 -245 1923 175 0 0 chr12 19265359 19265667 -124520788 - AluSx SINE Alu -3 309 2 683 173 33 61 chr12 19265667 19265857 -124520598 + L1MA7 LINE L1 6046 6240 -51 1724 285 96 36 chr12 19265880 19267225 -124519230 + L1MEc LINE L1 5132 6557 -7 584 126 11 21 chr12 19267225 19267320 -124519135 - FLAM SINE Alu -11 132 39 21 36 0 0 chr12 19267830 19267858 -124518597 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 19268074 19268106 -124518349 + AT_rich Low_complexity Low_complexity 1 32 0 940 161 7 0 chr12 19268128 19268277 -124518178 - AluSg/x SINE Alu -11 301 152 2292 59 0 7 chr12 19268285 19268575 -124517880 - AluYb8 SINE Alu 0 318 31 262 91 11 5 chr12 19268575 19268622 -124517833 + Alu SINE Alu 3 37 -263 25 0 0 0 chr12 19270129 19270154 -124516301 + AT_rich Low_complexity Low_complexity 1 25 0 1669 154 17 17 chr12 19270602 19270901 -124515554 + AluJb SINE Alu 1 299 -13 369 251 25 23 chr12 19270902 19271126 -124515329 - ERVL LTR ERVL -3679 2085 1799 * 1193 306 64 8 chr12 19271122 19271592 -124514863 - ERVL LTR ERVL -4360 1404 909 595 277 13 0 chr12 19271648 19271803 -124514652 + MER58B DNA MER1_type 167 323 -18 1380 291 35 33 chr12 19271803 19272353 -124514102 + L1MCb LINE L1 4 554 -5491 5390 258 87 31 chr12 19272415 19274257 -124512198 + L1MCb LINE L1 553 2290 -4274 2264 71 3 0 chr12 19274257 19274578 -124511877 + AluY SINE Alu 2 323 0 5390 258 87 31 chr12 19274578 19277276 -124509179 + L1MCb LINE L1 2290 5335 -1229 23 33 0 0 chr12 19277303 19277333 -124509122 + AT_rich Low_complexity Low_complexity 1 30 0 1004 251 22 38 chr12 19277394 19277764 -124508691 + L1M4 LINE L1 2464 2827 -3319 1956 127 7 0 chr12 19277767 19278043 -124508412 + AluSq SINE Alu 5 282 -31 28 0 0 0 chr12 19278055 19278083 -124508372 + AT_rich Low_complexity Low_complexity 1 28 0 839 176 21 16 chr12 19278103 19278291 -124508164 - L1MA4 LINE L1 -14 6286 6098 * 2759 259 61 17 chr12 19278288 19279433 -124507022 + L1M4 LINE L1 2848 4043 -2103 2035 229 90 71 chr12 19279432 19280375 -124506080 + L1MC3 LINE L1 6813 7773 -12 * 405 318 8 24 chr12 19280525 19280651 -124505804 - ERVL LTR ERVL -5061 703 580 683 329 32 22 chr12 19280890 19281203 -124505252 - ERVL LTR ERVL -2903 2861 2546 2926 176 49 3 chr12 19281919 19282514 -124503941 + L1MA6 LINE L1 5679 6300 0 1842 212 59 162 chr12 19282749 19283973 -124502482 - MER52A LTR ERV1 -2 1753 656 1703 197 34 8 chr12 19284292 19284647 -124501808 + MLT1A1 LTR MaLR 2 365 0 21 36 0 0 chr12 19284986 19285014 -124501441 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr12 19285738 19285789 -124500666 + (TG)n Simple_repeat Simple_repeat 2 52 0 384 119 0 0 chr12 19286682 19286712 -124499743 + (TA)n Simple_repeat Simple_repeat 1 89 0 384 119 0 0 chr12 19286712 19286771 -124499684 + (TA)n Simple_repeat Simple_repeat 2 60 0 1160 217 21 3 chr12 19286838 19287124 -124499331 - L1MD1 LINE L1 -1 6241 5951 1120 173 26 67 chr12 19287304 19287645 -124498810 - L1MD1 LINE L1 -420 5822 5496 641 319 19 5 chr12 19287679 19287889 -124498566 + LTR57-int LTR ERVL 1853 2065 -3278 566 360 46 41 chr12 19288075 19289061 -124497394 + LTR57-int LTR ERVL 3130 4100 -1243 306 244 0 49 chr12 19289807 19289889 -124496566 + MER4B-int LTR ERV1 5998 6075 -683 936 272 101 17 chr12 19289891 19290299 -124496156 + LTR47B LTR ERVL 2 443 0 837 256 30 0 chr12 19290299 19290611 -124495844 - L1MC/D LINE L1 -743 5797 5567 4335 171 17 18 chr12 19290632 19291511 -124494944 - L1MA8 LINE L1 -5 6286 5409 1508 189 55 3 chr12 19291511 19291876 -124494579 - L1MA8 LINE L1 -1098 5048 4665 * 2228 176 41 10 chr12 19291874 19292381 -124494074 + L1MA8 LINE L1 4145 4667 -1479 * 3818 255 34 22 chr12 19292375 19293737 -124492718 - L1MC/D LINE L1 -978 5562 4185 2162 149 31 8 chr12 19293737 19294093 -124492362 - THE1B LTR MaLR 0 364 1 10253 95 8 86 chr12 19294099 19295805 -124490650 - THE1B-int LTR MaLR -7 1573 1 2295 132 28 8 chr12 19295805 19296162 -124490293 - THE1B LTR MaLR 0 364 1 397 179 0 0 chr12 19296216 19296310 -124490145 - AluSg/x SINE Alu 0 312 219 1541 293 37 38 chr12 19296311 19297237 -124489218 - L1MDa LINE L1 -5413 1127 37 33 25 0 0 chr12 19297249 19297289 -124489166 + AT_rich Low_complexity Low_complexity 1 40 0 1637 148 161 75 chr12 19297329 19297701 -124488754 - MER4A LTR ERV1 0 664 261 525 175 21 10 chr12 19297701 19297798 -124488657 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr12 19298656 19298691 -124487764 + AT_rich Low_complexity Low_complexity 1 35 0 995 329 28 46 chr12 19299962 19300167 -124486288 - L2 LINE L2 0 3313 3106 2291 107 3 0 chr12 19300167 19300477 -124485978 + AluSp SINE Alu 3 313 0 995 329 28 46 chr12 19300477 19300770 -124485685 - L2 LINE L2 -207 3106 2824 1097 308 163 6 chr12 19300799 19301296 -124485159 - L2 LINE L2 -778 2536 1962 458 342 16 0 chr12 19301291 19301475 -124484980 + L2 LINE L2 1841 2027 -1287 * 3119 153 32 44 chr12 19302446 19302647 -124483808 - L1MC1 LINE L1 -1 6332 6130 2111 117 0 3 chr12 19302647 19302946 -124483509 - AluSx SINE Alu -14 298 1 3119 153 32 44 chr12 19302946 19303430 -124483025 - L1MC1 LINE L1 -203 6130 5655 3008 156 31 2 chr12 19303733 19304245 -124482210 - MER1A DNA MER1_type 0 527 1 469 314 82 79 chr12 19304246 19304587 -124481868 + L2 LINE L2 2927 3268 -4 2441 116 6 6 chr12 19304895 19305258 -124481197 + THE1B LTR MaLR 1 363 -1 427 260 44 61 chr12 19305558 19305739 -124480716 - MLT1K LTR MaLR 0 588 411 182 299 45 15 chr12 19305920 19305987 -124480468 + L3 LINE CR1 190 258 -1319 1928 176 84 0 chr12 19307993 19308386 -124478069 - MSTB LTR MaLR 0 426 1 2093 185 82 13 chr12 19308630 19309061 -124477394 - MLT1C LTR MaLR 0 426 9 186 403 106 36 chr12 19309452 19309951 -124476504 + L2 LINE L2 2221 2754 -560 906 143 0 0 chr12 19309967 19310107 -124476348 - AluSp/q SINE Alu -13 300 161 237 73 91 0 chr12 19310123 19310178 -124476277 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 428 364 36 38 chr12 19310347 19310712 -124475743 - L2 LINE L2 0 3313 2950 191 285 98 24 chr12 19311559 19311682 -124474773 - L2 LINE L2 -809 2505 2374 353 338 114 32 chr12 19311774 19312238 -124474217 + L1MEc LINE L1 856 1357 -5039 3821 28 15 0 chr12 19312451 19312914 -124473541 + L1PA4 LINE L1 5685 6154 -1 215 214 67 0 chr12 19313053 19313142 -124473313 + (TA)n Simple_repeat Simple_repeat 1 95 0 1220 281 111 28 chr12 19313329 19314541 -124471914 + L1MEc LINE L1 2631 3943 -2272 404 307 111 48 chr12 19317032 19317491 -124468964 - HAL1 LINE L1 -109 2398 1911 300 262 183 0 chr12 19317651 19317777 -124468678 - HAL1 LINE L1 -860 1647 1499 1220 194 96 97 chr12 19317780 19318193 -124468262 - MSTD LTR MaLR 0 396 1 246 335 76 25 chr12 19318283 19318441 -124468014 - HAL1 LINE L1 -1958 549 384 212 333 126 16 chr12 19320049 19320232 -124466223 + MIR SINE MIR 48 250 -12 2583 20 7 0 chr12 19320667 19320969 -124465486 - AluY SINE Alu -7 304 1 569 105 0 12 chr12 19322823 19322909 -124463546 + AluSc SINE Alu 213 297 -12 252 274 128 43 chr12 19324098 19324215 -124462240 + L2 LINE L2 3187 3313 0 660 306 86 5 chr12 19324508 19324730 -124461725 + MIR SINE MIR 15 254 -8 27 73 0 0 chr12 19325419 19325474 -124460981 + AT_rich Low_complexity Low_complexity 1 55 0 2050 76 14 10 chr12 19325482 19325773 -124460682 + AluY SINE Alu 1 292 -19 210 37 0 0 chr12 19325779 19325806 -124460649 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 285 169 0 0 chr12 19326217 19326276 -124460179 + (TA)n Simple_repeat Simple_repeat 1 59 0 26 30 0 0 chr12 19326452 19326485 -124459970 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 19326523 19326544 -124459911 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 19326664 19326694 -124459761 + AT_rich Low_complexity Low_complexity 1 30 0 632 77 11 0 chr12 19328122 19328213 -124458242 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 23 0 0 0 chr12 19328616 19328639 -124457816 + AT_rich Low_complexity Low_complexity 1 23 0 1184 327 168 19 chr12 19328845 19329619 -124456836 + L2 LINE L2 1928 2816 -498 1738 212 26 0 chr12 19329752 19330096 -124456359 - MLT1A1 LTR MaLR -9 356 4 203 346 115 0 chr12 19330517 19330595 -124455860 + L2 LINE L2 3184 3270 -2 2606 323 108 35 chr12 19331482 19331797 -124454658 - L2 LINE L2 -8 3305 3015 2106 241 39 49 chr12 19331797 19332490 -124453965 - MER76 LTR ERV -2 686 1 2606 323 108 35 chr12 19332490 19334239 -124452216 - L2 LINE L2 -298 3015 1084 549 267 5 37 chr12 19334795 19334982 -124451473 - LOR1-int LTR ERV1 -6647 1473 1293 10239 76 14 1 chr12 19435251 19436560 -124349895 - LOR1-int LTR ERV1 -4872 3754 2430 8621 74 29 5 chr12 19436546 19437708 -124348747 - LOR1-int LTR ERV1 -6613 2013 824 * 4777 66 55 6 chr12 19437744 19438398 -124348057 - HERVK14 LTR ERVK -5160 785 100 351 203 25 0 chr12 19438398 19438477 -124347978 - L1M3 LINE L1 -641 5693 5613 * 423 191 0 11 chr12 19438476 19438581 -124347874 - L1MB1 LINE L1 -215 5963 5860 * 654 27 0 0 chr12 19438571 19438646 -124347809 - HERVK14 LTR ERVK -5870 75 1 1995 97 81 88 chr12 19438646 19439040 -124347415 - LTR14B LTR ERVK 0 608 7 21 0 0 0 chr12 19439422 19439443 -124347012 + AT_rich Low_complexity Low_complexity 1 21 0 454 255 38 0 chr12 19439511 19439663 -124346792 - L1ME2 LINE L1 -1 6161 6003 343 209 12 35 chr12 19439817 19439903 -124346552 + L2 LINE L2 3229 3312 -1 657 314 36 61 chr12 19440161 19440524 -124345931 - L2 LINE L2 -17 3296 2943 1570 278 90 8 chr12 19440529 19441062 -124345393 - L1MEc LINE L1 -5686 710 134 247 268 46 108 chr12 19441062 19441256 -124345199 + L2 LINE L2 3132 3313 0 8514 201 34 63 chr12 19441640 19442085 -124344370 - L1MB1 LINE L1 -19 7568 7112 6393 121 36 22 chr12 19442085 19443141 -124343314 + MER11C LTR ERVK 1 1071 0 8514 201 34 63 chr12 19443141 19444232 -124342223 - L1MB1 LINE L1 -475 7112 5992 1737 166 19 22 chr12 19444232 19444545 -124341910 - AluSx SINE Alu 0 312 1 8514 201 34 63 chr12 19444545 19446396 -124340059 - L1MB1 LINE L1 -1595 5992 4279 2666 263 66 16 chr12 19446386 19447984 -124338471 - L1MB1 LINE L1 -4046 3519 2012 * 785 321 40 51 chr12 19448520 19448969 -124337486 - L1MB1 LINE L1 -5697 1799 1356 349 298 137 32 chr12 19448987 19449111 -124337344 + L2 LINE L2 3126 3262 -10 2289 118 0 0 chr12 19449781 19450087 -124336368 - AluSc SINE Alu -3 306 1 210 71 0 0 chr12 19450521 19450549 -124335906 + (TC)n Simple_repeat Simple_repeat 1 28 0 322 378 67 22 chr12 19451440 19451710 -124334745 - L2 LINE L2 -453 2861 2580 323 268 129 57 chr12 19451733 19451942 -124334513 - MIR SINE MIR -3 259 36 448 315 87 34 chr12 19452022 19452343 -124334112 - L2 LINE L2 -785 2529 2192 1882 243 24 21 chr12 19452346 19452806 -124333649 + L1M3b LINE L1 4 465 -5811 207 100 0 0 chr12 19452806 19452836 -124333619 + (CA)n Simple_repeat Simple_repeat 2 31 0 309 326 0 0 chr12 19453087 19453176 -124333279 - L1MC4 LINE L1 -1339 6703 6615 204 125 0 0 chr12 19453177 19453209 -124333246 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 2677 181 50 21 chr12 19453359 19453977 -124332478 - L1MA7 LINE L1 -10 6281 5646 4357 232 32 19 chr12 19454015 19455509 -124330946 + L1PA13 LINE L1 1208 2729 -4068 439 149 16 3 chr12 19455532 19455622 -124330833 + MSTC LTR MaLR 338 428 0 2111 126 0 10 chr12 19455798 19456099 -124330356 - AluSx SINE Alu -12 300 3 181 227 45 0 chr12 19456647 19456691 -124329764 + L2 LINE L2 3259 3304 -9 285 272 12 0 chr12 19457506 19457587 -124328868 + L1ME LINE L1 5518 5599 -522 1568 220 0 0 chr12 19457679 19457979 -124328476 + AluJb SINE Alu 3 302 -10 22 56 0 0 chr12 19458924 19458960 -124327495 + AT_rich Low_complexity Low_complexity 1 36 0 2315 70 23 0 chr12 19459226 19459527 -124326928 - AluY SINE Alu -3 308 1 228 242 30 15 chr12 19459527 19459593 -124326862 - L1ME LINE L1 -537 5584 5518 26 0 0 0 chr12 19460892 19460918 -124325537 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr12 19460933 19460970 -124325485 + AT_rich Low_complexity Low_complexity 1 37 0 384 312 123 26 chr12 19460971 19461125 -124325330 + MIR SINE MIR 6 174 -88 24 77 0 0 chr12 19461135 19461187 -124325268 + AT_rich Low_complexity Low_complexity 1 52 0 323 318 0 9 chr12 19461513 19461623 -124324832 + GA-rich Low_complexity Low_complexity 4 112 0 964 55 16 0 chr12 19461623 19461751 -124324704 + L1PA14 LINE L1 6015 6144 -17 24 32 0 0 chr12 19461756 19461787 -124324668 + AT_rich Low_complexity Low_complexity 1 31 0 557 130 32 32 chr12 19461874 19461997 -124324458 - L1MB1 LINE L1 -2 6166 6044 276 250 29 29 chr12 19463878 19463982 -124322473 + T-rich Low_complexity Low_complexity 3 106 0 202 200 0 0 chr12 19464224 19464264 -124322191 + CT-rich Low_complexity Low_complexity 1 40 0 4766 127 60 19 chr12 19464273 19465063 -124321392 - LTR12 LTR ERV1 0 826 5 14572 96 18 11 chr12 19465069 19467656 -124318799 - HERV9 LTR ERV1 0 8399 504 * 34654 83 1 4 chr12 19467655 19472237 -124314218 - HERV9 LTR ERV1 -2082 6317 1749 459 287 77 24 chr12 19472487 19472696 -124313759 + MIR SINE MIR 32 251 -11 21 36 0 0 chr12 19474051 19474079 -124312376 + AT_rich Low_complexity Low_complexity 1 28 0 349 159 32 0 chr12 19474224 19474287 -124312168 - L1MA4 LINE L1 -362 5938 5874 301 196 31 0 chr12 19474287 19474383 -124312072 + L1MA3 LINE L1 6206 6305 0 346 316 85 62 chr12 19474595 19475076 -124311379 + L1MEc LINE L1 1000 1491 -5116 338 303 29 63 chr12 19475160 19475335 -124311120 + L1MEc LINE L1 1409 1577 -4849 441 0 0 0 chr12 19475335 19475384 -124311071 + (CA)n Simple_repeat Simple_repeat 2 50 0 784 202 66 27 chr12 19475385 19475568 -124310887 - Tigger2 DNA MER2_type -1 2717 2528 207 48 48 24 chr12 19475580 19475622 -124310833 + (TA)n Simple_repeat Simple_repeat 1 43 0 1156 149 0 0 chr12 19475622 19475796 -124310659 - AluSx SINE Alu -10 300 127 42231 53 8 4 chr12 19475801 19481916 -124304539 - L1PA4 LINE L1 -13 6142 2 880 158 0 0 chr12 19481938 19482065 -124304390 - AluSx SINE Alu -185 127 1 4428 190 33 6 chr12 19482065 19482921 -124303534 - Tigger2 DNA MER2_type -174 2544 1666 400 275 40 73 chr12 19482995 19483242 -124303213 + L1ME3A LINE L1 5675 5905 -265 26 50 0 0 chr12 19483407 19483447 -124303008 + AT_rich Low_complexity Low_complexity 1 40 0 8264 224 12 8 chr12 19483552 19484990 -124301465 - L1PA15 LINE L1 0 6816 5385 210 91 0 0 chr12 19484990 19485023 -124301432 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 8264 224 12 8 chr12 19485023 19486478 -124299977 - L1PA15 LINE L1 -1431 5385 3909 5720 249 40 22 chr12 19486480 19487414 -124299041 - L1PA15 LINE L1 -2994 3803 2887 1839 158 3 16 chr12 19487414 19487730 -124298725 - AluSx SINE Alu 0 312 1 5720 249 40 22 chr12 19487730 19489272 -124297183 - L1PA15 LINE L1 -3910 2887 1286 21 36 0 0 chr12 19490613 19490641 -124295814 + AT_rich Low_complexity Low_complexity 1 28 0 3729 243 47 19 chr12 19490678 19492220 -124294235 + L1MD2 LINE L1 4518 6015 -344 2049 138 3 0 chr12 19492220 19492525 -124293930 - AluSx SINE Alu -6 306 1 3729 243 47 19 chr12 19492525 19492574 -124293881 + L1MD2 LINE L1 6015 6061 -298 330 45 0 0 chr12 19492574 19492618 -124293837 + (CA)n Simple_repeat Simple_repeat 1 44 0 3729 243 47 19 chr12 19492618 19492815 -124293640 + L1MD2 LINE L1 6061 6359 0 1374 275 135 21 chr12 19492810 19493389 -124293066 + L1MEc LINE L1 9 653 -5743 * 1601 170 3 17 chr12 19493436 19493730 -124292725 + L1PB3 LINE L1 5865 6154 0 422 190 95 26 chr12 19493744 19493860 -124292595 + L1M4 LINE L1 4076 4199 -1947 198 260 0 20 chr12 19493910 19493960 -124292495 + L3 LINE CR1 1524 1572 -5 21 57 0 0 chr12 19494300 19494335 -124292120 + AT_rich Low_complexity Low_complexity 1 35 0 932 239 21 13 chr12 19494391 19494665 -124291790 + L1MEc LINE L1 673 901 -5317 2649 272 71 22 chr12 19494691 19496064 -124290391 + L1MEc LINE L1 1034 2474 -3922 305 250 118 19 chr12 19497427 19497565 -124288890 + MIR SINE MIR 56 215 -47 631 234 1 1 chr12 19497688 19497832 -124288623 - L1MB5 LINE L1 -55 6119 5979 4645 198 14 62 chr12 19497872 19498312 -124288143 - L1MC1 LINE L1 -13 6320 5861 2079 127 0 0 chr12 19498312 19498603 -124287852 - AluSx SINE Alu -21 291 1 4645 198 14 62 chr12 19498603 19499173 -124287282 - L1MC1 LINE L1 -472 5861 5408 2215 98 0 10 chr12 19499173 19499469 -124286986 - AluSc SINE Alu -16 293 1 4645 198 14 62 chr12 19499469 19499961 -124286494 - L1MC1 LINE L1 -925 5408 4894 2316 283 53 30 chr12 19500755 19501583 -124284872 - L2 LINE L2 -545 2769 1923 721 316 20 0 chr12 19501596 19501849 -124284606 - L2 LINE L2 -1615 1699 1442 2249 61 0 67 chr12 19501870 19502198 -124284257 + AluY SINE Alu 1 306 -5 239 269 8 108 chr12 19504440 19504570 -124281885 + MIR3 SINE MIR 90 206 -2 2651 83 2 28 chr12 19505543 19505880 -124280575 - L1PA13 LINE L1 -6 6157 5830 2195 122 0 0 chr12 19505880 19506184 -124280271 - AluY SINE Alu -7 304 1 2651 83 2 28 chr12 19506184 19506241 -124280214 - L1PA13 LINE L1 -333 5830 5773 24 0 0 0 chr12 19506499 19506523 -124279932 + AT_rich Low_complexity Low_complexity 1 24 0 509 367 33 11 chr12 19508482 19508907 -124277548 - ERVL LTR ERVL -1211 4314 3833 581 311 183 35 chr12 19509910 19510390 -124276065 + MLT1H1 LTR MaLR 1 593 -2 325 283 94 29 chr12 19512711 19512849 -124273606 + L3b LINE CR1 1302 1448 -135 21 0 0 0 chr12 19513270 19513291 -124273164 + AT_rich Low_complexity Low_complexity 1 21 0 3550 162 35 56 chr12 19514997 19515799 -124270656 + LTR1 LTR ERV1 1 785 0 22 0 0 0 chr12 19515891 19515913 -124270542 + AT_rich Low_complexity Low_complexity 1 22 0 1817 132 103 27 chr12 19516179 19516549 -124269906 - LTR14B LTR ERVK 0 608 211 249 85 21 43 chr12 19516537 19516584 -124269871 - LTR14B LTR ERVK -562 46 1 * 500 92 153 20 chr12 19516587 19516685 -124269770 - HERVK14 LTR ERVK 0 5945 5835 304 212 0 17 chr12 19516685 19516760 -124269695 - MER41C LTR ERV1 -491 63 1 3254 62 33 17 chr12 19516760 19517402 -124269053 - HERVK14 LTR ERVK -186 5759 5038 305 122 0 0 chr12 19517402 19517451 -124269004 - HERV17 LTR ERV1 -8145 481 433 * 722 101 58 0 chr12 19517450 19517588 -124268867 - HERV17 LTR ERV1 -3073 5553 5408 7623 269 30 6 chr12 19517772 19520246 -124266209 - L1M4 LINE L1 -1295 4851 2317 3945 199 30 26 chr12 19520259 19522001 -124264454 - L1MA9 LINE L1 -5 7267 5436 990 254 88 54 chr12 19521989 19522926 -124263529 - L1M4 LINE L1 -3623 3942 2955 * 578 165 50 25 chr12 19522962 19523083 -124263372 + MER70B LTR ERVL 39 162 -416 2025 243 12 36 chr12 19523085 19523579 -124262876 + MER70B LTR ERVL 95 576 -2 2967 255 63 57 chr12 19523584 19525470 -124260985 - L1MA9 LINE L1 -4281 2826 926 928 212 111 9 chr12 19525488 19525714 -124260741 - L1MA9 LINE L1 -6780 250 2 631 254 14 39 chr12 19525724 19525954 -124260501 - L1MEc LINE L1 -3967 2429 2206 2516 62 3 0 chr12 19525954 19526263 -124260192 - AluY SINE Alu -1 310 1 631 254 14 39 chr12 19526263 19526315 -124260140 - L1MEc LINE L1 -4190 2206 2154 22 35 0 0 chr12 19526870 19526899 -124259556 + AT_rich Low_complexity Low_complexity 1 29 0 1519 99 0 5 chr12 19528026 19528251 -124258204 + AluSg/x SINE Alu 81 304 0 180 310 75 80 chr12 19531286 19531499 -124254956 - MIR SINE MIR -6 256 45 26 50 0 0 chr12 19532578 19532618 -124253837 + AT_rich Low_complexity Low_complexity 1 40 0 262 307 144 20 chr12 19533072 19533225 -124253230 + LTR67 LTR ERVL 29 200 -357 273 75 0 0 chr12 19533748 19533788 -124252667 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr12 19534365 19534387 -124252068 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 19534619 19534656 -124251799 + AT_rich Low_complexity Low_complexity 1 37 0 253 171 237 0 chr12 19534668 19534744 -124251711 + L1ME3A LINE L1 5844 5937 -233 357 314 27 53 chr12 19534756 19534944 -124251511 + L1ME3A LINE L1 5979 6161 -9 23 54 0 0 chr12 19535637 19535674 -124250781 + AT_rich Low_complexity Low_complexity 1 37 0 297 326 43 0 chr12 19536040 19536181 -124250274 - MER103 DNA DNA -17 149 3 298 245 160 0 chr12 19536902 19536996 -124249459 + MIR SINE MIR 54 162 -100 312 287 40 67 chr12 19537119 19537269 -124249186 - L2 LINE L2 0 3313 3168 204 321 19 0 chr12 19537511 19537564 -124248891 - L2 LINE L2 -70 3202 3149 231 274 0 82 chr12 19537723 19537796 -124248659 + MIR SINE MIR 123 189 -73 433 245 42 94 chr12 19537967 19538159 -124248296 + L2 LINE L2 3130 3311 -2 1758 144 30 30 chr12 19541118 19541416 -124245039 - AluSx SINE Alu -14 298 1 379 263 102 8 chr12 19541595 19541713 -124244742 + MER94 DNA DNA 5 133 -1 262 266 0 0 chr12 19542140 19542204 -124244251 - 7SK RNA RNA -97 96 33 25 0 0 0 chr12 19543168 19543193 -124243262 + AT_rich Low_complexity Low_complexity 1 25 0 2327 264 26 46 chr12 19543564 19543845 -124242610 + L1ME1 LINE L1 5315 5600 -566 2470 59 0 0 chr12 19543845 19544150 -124242305 + AluY SINE Alu 1 305 -6 1784 142 0 43 chr12 19544156 19544459 -124241996 + AluSx SINE Alu 1 290 -22 2327 264 26 46 chr12 19544459 19545016 -124241439 + L1ME1 LINE L1 5605 6143 -23 376 288 101 0 chr12 19546000 19546166 -124240289 + MIR SINE MIR 31 215 -47 21 71 0 0 chr12 19546521 19546563 -124239892 + AT_rich Low_complexity Low_complexity 1 42 0 1177 342 61 26 chr12 19547335 19548218 -124238237 + HERV16 LTR ERVL 1981 2894 -2102 466 343 23 17 chr12 19549062 19549234 -124237221 + LTR16C LTR ERVL 130 302 -189 209 328 57 94 chr12 19549735 19549851 -124236604 - L2 LINE L2 -34 3238 3119 2434 56 3 0 chr12 19549851 19550155 -124236300 + AluY SINE Alu 1 305 -6 456 67 0 0 chr12 19550158 19550218 -124236237 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 209 328 57 94 chr12 19550218 19550499 -124235956 - L2 LINE L2 -155 3117 2852 22 0 0 0 chr12 19551261 19551283 -124235172 + AT_rich Low_complexity Low_complexity 1 22 0 526 281 60 15 chr12 19551325 19551524 -124234931 - MIR SINE MIR -47 215 8 1103 277 58 12 chr12 19551525 19551883 -124234572 + L1MC3 LINE L1 2669 3058 -3088 2340 98 0 3 chr12 19551883 19552188 -124234267 + AluSc SINE Alu 1 304 -5 1103 277 58 12 chr12 19552188 19552328 -124234127 + L1MC3 LINE L1 3058 3190 -2956 3258 259 57 14 chr12 19552328 19553566 -124232889 + L1MC3 LINE L1 4112 5397 -793 1049 197 76 0 chr12 19553567 19553732 -124232723 - AluJb SINE Alu -10 302 118 183 42 0 0 chr12 19553732 19553756 -124232699 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1049 197 76 0 chr12 19553756 19553788 -124232667 - AluJb SINE Alu -194 118 90 5594 201 81 16 chr12 19553790 19554517 -124231938 + L1MC3 LINE L1 5397 6075 -1710 1803 171 12 21 chr12 19554517 19554857 -124231598 - MER1B DNA MER1_type 0 337 1 5594 201 81 16 chr12 19554857 19555519 -124230936 + L1MC3 LINE L1 6075 6876 -909 23885 172 25 25 chr12 19555520 19561900 -124224555 + L1PA10 LINE L1 10 6469 -14 2771 225 89 39 chr12 19561905 19562215 -124224240 + L1MC3 LINE L1 6862 7155 -630 2213 81 0 37 chr12 19562215 19562537 -124223918 + AluSg SINE Alu 1 310 0 2771 225 89 39 chr12 19562537 19563089 -124223366 + L1MC3 LINE L1 7155 7767 -18 4276 237 22 17 chr12 19564691 19566711 -124219744 - L1MA9 LINE L1 -374 5938 3909 3447 210 23 25 chr12 19567057 19567942 -124218513 - L1 LINE L1 -1730 5437 4555 766 244 0 12 chr12 19567943 19568111 -124218344 + LTR28 LTR ERV1 1 166 -854 505 251 78 33 chr12 19568158 19568449 -124218006 + MER61D LTR ERV1 344 1297 -11 2490 248 59 8 chr12 19568596 19569459 -124216996 - L1 LINE L1 -2610 4557 3651 1374 224 28 41 chr12 19569449 19569854 -124216601 + L1M2c LINE L1 2217 2618 -4171 * 1913 129 39 4 chr12 19569916 19570196 -124216259 + AluSx SINE Alu 1 290 -22 380 270 25 31 chr12 19570237 19570396 -124216059 - L1 LINE L1 -3552 3615 3458 21 57 0 0 chr12 19570400 19570435 -124216020 + AT_rich Low_complexity Low_complexity 1 35 0 309 154 18 47 chr12 19570437 19570606 -124215849 + (TATAA)n Simple_repeat Simple_repeat 1 164 0 * 476 94 47 20 chr12 19570601 19570750 -124215705 + (TA)n Simple_repeat Simple_repeat 1 153 0 444 194 38 14 chr12 19570750 19571103 -124215352 + (TATAA)n Simple_repeat Simple_repeat 1 361 0 936 264 30 0 chr12 19571103 19571368 -124215087 - L1 LINE L1 -3693 3474 3202 9374 234 57 25 chr12 19571413 19574317 -124212138 - L1 LINE L1 -4161 3007 1 21 0 0 0 chr12 19574364 19574385 -124212070 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 0 0 chr12 19574822 19574973 -124211482 + MIR SINE MIR 7 157 -105 388 312 34 99 chr12 19574969 19575053 -124211402 - MIR SINE MIR 0 262 174 * 300 27 0 0 chr12 19575053 19575090 -124211365 + (CA)n Simple_repeat Simple_repeat 2 38 0 388 312 34 99 chr12 19575090 19575268 -124211187 - MIR SINE MIR -88 174 17 225 375 107 26 chr12 19575372 19575719 -124210736 + L2 LINE L2 2384 2758 -556 311 370 55 0 chr12 19575841 19575987 -124210468 + MIR3 SINE MIR 49 202 -6 261 0 0 0 chr12 19576206 19576235 -124210220 + (TA)n Simple_repeat Simple_repeat 2 30 0 2008 198 57 29 chr12 19577036 19577525 -124208930 + MLT1D LTR MaLR 1 503 -2 295 241 101 0 chr12 19578067 19578146 -124208309 + L2 LINE L2 3227 3313 0 22 0 0 0 chr12 19578158 19578180 -124208275 + AT_rich Low_complexity Low_complexity 1 22 0 2047 126 3 3 chr12 19582045 19582355 -124204100 - AluSx SINE Alu -2 310 1 21 82 0 0 chr12 19582408 19582457 -124203998 + AT_rich Low_complexity Low_complexity 1 49 0 230 304 59 29 chr12 19582866 19582968 -124203487 + L2 LINE L2 3208 3312 -1 191 254 109 0 chr12 19584604 19584659 -124201796 - MIR3 SINE MIR -8 200 140 317 246 108 109 chr12 19584728 19585040 -124201415 - L2 LINE L2 -529 2785 2403 2180 82 26 10 chr12 19585040 19585346 -124201109 + AluY SINE Alu 1 311 0 317 246 108 109 chr12 19585346 19585422 -124201033 - L2 LINE L2 -911 2403 2328 1158 317 53 9 chr12 19585423 19585874 -124200581 - L2 LINE L2 -1110 2204 1734 1215 207 91 12 chr12 19585886 19586205 -124200250 - L1MC3 LINE L1 -1 7784 7441 350 271 42 0 chr12 19586192 19586288 -124200167 - L1M4 LINE L1 -2442 3704 3605 * 25 0 0 0 chr12 19586293 19586318 -124200137 + AT_rich Low_complexity Low_complexity 1 25 0 226 290 16 0 chr12 19586563 19586625 -124199830 + MLT1H LTR MaLR 1 63 -486 766 307 4 8 chr12 19586627 19586865 -124199590 - L1MCb LINE L1 -5586 321 85 275 268 41 31 chr12 19586873 19586970 -124199485 - L1MCb LINE L1 -6310 116 19 692 307 107 46 chr12 19586975 19587172 -124199283 - L2 LINE L2 -1609 1705 1521 1455 209 67 34 chr12 19587172 19587618 -124198837 + MLT1C LTR MaLR 5 465 -2 692 307 107 46 chr12 19587618 19587899 -124198556 - L2 LINE L2 -1793 1521 1198 1144 273 133 28 chr12 19588990 19589419 -124197036 - MLT1H LTR MaLR -9 540 67 5586 181 48 47 chr12 19589419 19589795 -124196660 + L1M4c LINE L1 403 777 -5607 1971 146 10 0 chr12 19589795 19590104 -124196351 - AluSx SINE Alu 0 312 1 5586 181 48 47 chr12 19590104 19591136 -124195319 + L1M4c LINE L1 777 1812 -4572 526 257 19 49 chr12 19591136 19591340 -124195115 - MLT1D LTR MaLR -84 421 199 216 0 0 0 chr12 19591835 19591859 -124194596 + (T)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr12 19592004 19592033 -124194422 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19592593 19592625 -124193830 + AT_rich Low_complexity Low_complexity 1 32 0 971 271 182 64 chr12 19693209 19693943 -124092512 - L2 LINE L2 -5 3308 2488 1080 218 40 40 chr12 19693944 19694192 -124092263 - MLT1E LTR MaLR 0 593 346 536 295 77 10 chr12 19694222 19694429 -124092026 - MLT1E LTR MaLR -371 222 2 2100 185 0 8 chr12 19694619 19694987 -124091468 - MLT1A1 LTR MaLR 0 365 1 583 209 67 8 chr12 19695309 19695443 -124091012 - LTR9 LTR ERV1 0 612 471 2334 185 23 70 chr12 19695446 19696002 -124090453 - LTR9 LTR ERV1 -82 530 1 1424 220 59 93 chr12 19697606 19698209 -124088246 + MLT1E2 LTR MaLR 2 613 -41 2007 111 0 11 chr12 19698892 19699171 -124087284 - AluSx SINE Alu -36 276 1 380 340 39 31 chr12 19699218 19699400 -124087055 + MIR SINE MIR 2 181 -81 2205 88 0 7 chr12 19699400 19699712 -124086743 + AluSg SINE Alu 3 312 0 380 340 39 31 chr12 19699712 19699730 -124086725 + MIR SINE MIR 181 197 -65 225 0 0 0 chr12 19699730 19699755 -124086700 + (TA)n Simple_repeat Simple_repeat 1 25 0 380 340 39 31 chr12 19699755 19699811 -124086644 + MIR SINE MIR 197 262 0 592 323 78 9 chr12 19699896 19700113 -124086342 + MIR SINE MIR 3 234 -28 588 263 48 88 chr12 19700363 19700740 -124085715 - L1ME4a LINE L1 -295 5826 5470 1246 198 34 0 chr12 19700754 19700991 -124085464 + MLT1A1 LTR MaLR 121 365 0 1398 165 106 30 chr12 19700991 19701294 -124085161 - MLT1D LTR MaLR -179 326 1 320 267 9 19 chr12 19702793 19702898 -124083557 - MIR3 SINE MIR -1 207 104 1255 192 54 11 chr12 19703291 19703551 -124082904 - MLT1A1 LTR MaLR -94 271 1 312 290 91 5 chr12 19703771 19703957 -124082498 - L1ME3A LINE L1 -219 5951 5750 329 290 80 0 chr12 19703957 19704095 -124082360 - L1MEd LINE L1 -3987 2553 2405 352 275 86 42 chr12 19704593 19705153 -124081302 - L1MEd LINE L1 -4602 1992 1380 180 217 0 0 chr12 19705153 19705199 -124081256 + (TG)n Simple_repeat Simple_repeat 2 47 0 389 250 38 85 chr12 19705233 19705469 -124080986 - L1MEd LINE L1 -5171 1359 1135 383 243 63 9 chr12 19707188 19707299 -124079156 + MER51D LTR ERV1 464 580 -77 22 0 0 0 chr12 19707901 19707923 -124078532 + AT_rich Low_complexity Low_complexity 1 22 0 243 304 101 7 chr12 19709570 19709708 -124076747 - MER103 DNA DNA -7 159 9 27 73 0 0 chr12 19709960 19710015 -124076440 + AT_rich Low_complexity Low_complexity 1 55 0 200 338 14 0 chr12 19710318 19710389 -124076066 + MIR SINE MIR 76 147 -115 204 165 25 152 chr12 19711533 19711612 -124074843 + L2 LINE L2 3156 3224 -89 2024 146 0 0 chr12 19711805 19712106 -124074349 - AluSx SINE Alu -11 301 1 23 33 0 0 chr12 19712840 19712870 -124073585 + AT_rich Low_complexity Low_complexity 1 30 0 367 354 99 14 chr12 19713190 19713413 -124073042 - MIR SINE MIR 0 262 21 324 0 0 0 chr12 19714480 19714516 -124071939 + (CA)n Simple_repeat Simple_repeat 2 37 0 204 292 175 25 chr12 19715039 19715159 -124071296 - L2 LINE L2 -1 3271 3134 428 366 130 27 chr12 19715345 19716006 -124070449 - L2 LINE L2 -341 2973 2245 1788 180 40 19 chr12 19716007 19716379 -124070076 - MLT1B LTR MaLR 0 390 11 196 329 43 0 chr12 19716412 19716482 -124069973 - MIR SINE MIR -109 153 81 634 116 32 0 chr12 19717802 19717897 -124068558 + AluJ/FLAM SINE Alu 1 98 -214 24 0 0 0 chr12 19717940 19717964 -124068491 + GC_rich Low_complexity Low_complexity 1 24 0 359 261 25 17 chr12 19717991 19718110 -124068345 + (TATG)n Simple_repeat Simple_repeat 3 122 0 593 202 17 6 chr12 19718114 19718292 -124068163 + (TA)n Simple_repeat Simple_repeat 1 180 0 470 306 91 39 chr12 19718485 19718717 -124067738 + MIR SINE MIR 4 247 -15 199 289 33 11 chr12 19718729 19718819 -124067636 - MIR3 SINE MIR -5 203 112 2488 183 35 27 chr12 19719637 19720048 -124066407 + MER66B LTR ERV1 1 418 -68 2347 99 0 10 chr12 19720048 19720360 -124066095 - AluSc SINE Alu 0 309 1 2488 183 35 27 chr12 19720360 19720430 -124066025 + MER66B LTR ERV1 418 486 0 575 261 119 20 chr12 19722613 19722866 -124063589 + MARNA DNA Mariner 146 423 -163 293 242 0 0 chr12 19722920 19722982 -124063473 - MLT1J2 LTR MaLR -28 422 361 457 238 64 91 chr12 19723046 19723325 -124063130 - MLT1I LTR MaLR -121 288 51 225 378 134 18 chr12 19724985 19725260 -124061195 + L3b LINE CR1 1276 1582 -1 21 36 0 0 chr12 19725646 19725674 -124060781 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 19726222 19726261 -124060194 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 322 141 17 chr12 19726892 19727069 -124059386 - MIR SINE MIR -44 218 20 1921 153 19 16 chr12 19729513 19729879 -124056576 - L1MA2 LINE L1 -155 6149 5783 202 273 0 45 chr12 19732075 19732141 -124054314 - L2 LINE L2 -28 3285 3223 237 98 0 0 chr12 19733512 19733553 -124052902 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 351 59 17 chr12 19734755 19734927 -124051528 - MIR3 SINE MIR -33 229 1 21 36 0 0 chr12 19734945 19734973 -124051482 + AT_rich Low_complexity Low_complexity 1 28 0 209 348 22 39 chr12 19738840 19739021 -124047434 + MER5B DNA MER1_type 1 178 0 492 214 0 0 chr12 19739069 19739167 -124047288 + MER5A DNA MER1_type 9 106 -83 2905 156 57 31 chr12 19739224 19740010 -124046445 + pTR5 LTR ERV1 743 2021 -417 376 238 10 0 chr12 19740011 19740112 -124046343 + LTR30 LTR ERV1 541 642 -80 2175 107 3 0 chr12 19740112 19740431 -124046024 + pTR5 LTR ERV1 66 385 -2053 1789 151 20 29 chr12 19740432 19740776 -124045679 - THE1C LTR MaLR -31 344 4 600 279 35 23 chr12 19743252 19743424 -124043031 + MER91A DNA MER1_type 3 176 -20 403 270 56 0 chr12 19743426 19743515 -124042940 - MER81 DNA DNA -20 94 1 239 348 22 0 chr12 19743726 19743818 -124042637 - MIR SINE MIR -79 183 90 678 276 186 58 chr12 19745217 19746025 -124040430 - L2 LINE L2 -6 3307 2376 2199 117 3 0 chr12 19746358 19746666 -124039789 - AluSx SINE Alu -3 309 1 234 385 0 0 chr12 19746666 19746744 -124039711 - L2 LINE L2 -1 3271 3194 871 79 87 0 chr12 19747892 19748019 -124038436 + MER85 DNA T2_type 1 138 -1 21 0 0 0 chr12 19748280 19748301 -124038154 + AT_rich Low_complexity Low_complexity 1 21 0 2098 112 23 10 chr12 19748303 19748606 -124037849 - AluSx SINE Alu -3 309 3 1672 169 17 7 chr12 19749236 19749526 -124036929 - AluJb SINE Alu -19 293 1 197 65 32 0 chr12 19749948 19749979 -124036476 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 12196 186 41 23 chr12 19749997 19753634 -124032821 - L1MA7 LINE L1 -2 6493 2791 7122 188 39 11 chr12 19753624 19755229 -124031226 - L1 LINE L1 -1603 5962 4313 * 2056 254 46 60 chr12 19755232 19756413 -124030042 - L1 LINE L1 -4415 3150 2175 19047 142 36 39 chr12 19756599 19759183 -124027272 - L1P3 LINE L1 -1599 4862 2191 567 71 0 41 chr12 19759183 19759281 -124027174 + SVA Other Other 1293 1386 0 19047 142 36 39 chr12 19759281 19760204 -124026251 - L1P3 LINE L1 -4270 2191 1267 6782 159 14 29 chr12 19760222 19761463 -124024992 - L1P3 LINE L1 -4743 1132 3 2805 286 58 34 chr12 19761470 19763736 -124022719 - L1MA7 LINE L1 -4244 2107 1 329 264 174 52 chr12 19763778 19763814 -124022641 + MIR SINE MIR 83 113 -149 2286 104 3 7 chr12 19763814 19764122 -124022333 - AluSq SINE Alu -6 307 1 329 264 174 52 chr12 19764122 19764240 -124022215 + MIR SINE MIR 113 256 -6 2055 128 0 7 chr12 19764364 19764660 -124021795 + AluSq SINE Alu 1 294 -19 895 215 23 56 chr12 19764818 19765032 -124021423 - MER63A DNA MER1_type 0 210 4 479 270 13 63 chr12 19768147 19768306 -124018149 - MIR SINE MIR -49 213 63 760 330 143 30 chr12 19769257 19769846 -124016609 + L2 LINE L2 1223 1953 -1361 1969 129 161 11 chr12 19769846 19770218 -124016237 + MSTA LTR MaLR 1 428 0 760 330 143 30 chr12 19770218 19770540 -124015915 + L2 LINE L2 1953 2237 -1077 4816 206 50 16 chr12 19770552 19771963 -124014492 - L1MD1 LINE L1 -1 6635 5156 1756 241 83 25 chr12 19771958 19772439 -124014016 - L1MD1 LINE L1 -6016 524 16 * 548 338 151 21 chr12 19772439 19772862 -124013593 + L2 LINE L2 2230 2707 -607 2113 144 0 0 chr12 19773193 19773505 -124012950 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 19774642 19774672 -124011783 + AT_rich Low_complexity Low_complexity 1 30 0 2213 33 7 4 chr12 19775102 19775373 -124011082 + L1PA4 LINE L1 5881 6152 -3 722 288 35 31 chr12 19775549 19775805 -124010650 - MIR SINE MIR 0 262 6 255 204 255 20 chr12 19775839 19775937 -124010518 - MIR SINE MIR -29 233 113 189 269 39 0 chr12 19776114 19776166 -124010289 + L2 LINE L2 3219 3272 0 180 377 0 0 chr12 19777869 19777946 -124008509 - MIR SINE MIR -27 235 159 412 308 93 17 chr12 19778379 19778551 -124007904 + MIR SINE MIR 14 198 -64 341 263 0 0 chr12 19778549 19778629 -124007826 - MIR SINE MIR -16 246 167 * 207 259 17 0 chr12 19778643 19778701 -124007754 + MIR SINE MIR 203 261 -1 865 222 35 5 chr12 19778727 19778925 -124007530 - MER3 DNA MER1_type -3 206 3 6390 81 3 0 chr12 19781662 19783051 -124003404 - L1PA14 LINE L1 -4 6157 4748 330 310 83 99 chr12 19783068 19783523 -124002932 - L2 LINE L2 0 3272 2825 239 271 0 0 chr12 19784035 19784094 -124002361 + L2 LINE L2 2187 2245 -1069 383 322 92 58 chr12 19784195 19784521 -124001934 + L2 LINE L2 2626 2962 -352 283 309 31 10 chr12 19785176 19785273 -124001182 - MIR SINE MIR -108 154 56 185 216 0 0 chr12 19786269 19786306 -124000149 + L2 LINE L2 3261 3297 -16 328 285 75 11 chr12 19786682 19786819 -123999636 - MIR3 SINE MIR -5 203 60 221 0 35 0 chr12 19786901 19786930 -123999525 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 506 274 24 18 chr12 19788637 19788805 -123997650 - MIR SINE MIR 0 262 94 294 313 53 27 chr12 19795074 19795224 -123991231 + MIR3 SINE MIR 18 171 -37 252 288 96 0 chr12 19795267 19795340 -123991115 + L2 LINE L2 3194 3273 -40 216 303 61 0 chr12 19795839 19795905 -123990550 + L2 LINE L2 3200 3269 -3 232 234 0 85 chr12 19796294 19796388 -123990067 + L1M4 LINE L1 3892 3977 -2169 583 263 108 20 chr12 19796649 19796900 -123989555 + L1M4 LINE L1 3871 4143 -2003 834 307 18 26 chr12 19797108 19797489 -123988966 + L1M4 LINE L1 4490 4867 -1279 271 192 0 0 chr12 19797622 19797674 -123988781 - L2 LINE L2 -1 3312 3261 751 286 147 39 chr12 19797754 19798241 -123988214 + L2 LINE L2 2753 3282 -31 205 250 0 0 chr12 19798252 19798304 -123988151 + (TG)n Simple_repeat Simple_repeat 1 52 0 432 0 0 0 chr12 19799033 19799081 -123987374 + (TA)n Simple_repeat Simple_repeat 1 48 0 387 0 0 0 chr12 19799080 19799123 -123987332 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 1911 103 53 4 chr12 19799124 19799387 -123987068 - AluSq SINE Alu -37 276 1 610 339 44 7 chr12 19799995 19800408 -123986047 + HAL1b LINE L1 211 638 -710 859 227 0 0 chr12 19800586 19800749 -123985706 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr12 19801079 19801100 -123985355 + AT_rich Low_complexity Low_complexity 1 21 0 325 301 70 19 chr12 19801114 19801270 -123985185 + L1MC4a LINE L1 5895 6058 -1750 2394 56 3 3 chr12 19801385 19801688 -123984767 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 19802466 19802487 -123983968 + AT_rich Low_complexity Low_complexity 1 21 0 217 254 14 0 chr12 19803162 19803233 -123983222 + (TA)n Simple_repeat Simple_repeat 1 72 0 381 271 21 0 chr12 19804670 19804766 -123981689 + Charlie2 DNA MER1_type 228 325 -2457 916 261 95 35 chr12 19804767 19805192 -123981263 + Charlie2 DNA MER1_type 1855 2320 -542 218 81 27 0 chr12 19805192 19805229 -123981226 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 916 261 95 35 chr12 19805229 19805339 -123981116 + Charlie2 DNA MER1_type 2320 2422 -440 1637 186 7 11 chr12 19806376 19806655 -123979800 + AluJo SINE Alu 5 282 -30 191 304 128 20 chr12 19806691 19806793 -123979662 - L2 LINE L2 -1 3312 3200 182 325 39 0 chr12 19806882 19806959 -123979496 - L2 LINE L2 -225 3047 2968 1940 207 99 18 chr12 19807030 19807484 -123978971 - MLT1D LTR MaLR -13 492 2 1609 176 92 46 chr12 19807603 19807641 -123978814 - MLT2D LTR ERVL -4 410 375 345 24 0 0 chr12 19807641 19807683 -123978772 + (TG)n Simple_repeat Simple_repeat 1 42 0 1609 176 92 46 chr12 19807683 19808036 -123978419 - MLT2D LTR ERVL -39 375 1 615 266 113 81 chr12 19808248 19808688 -123977767 + MLT1G LTR MaLR 10 503 -46 229 307 0 85 chr12 19808697 19808715 -123977740 - L1MC/D LINE L1 -512 5832 5815 967 281 100 5 chr12 19808715 19809332 -123977123 - L1ME3A LINE L1 -343 5810 5106 254 108 0 0 chr12 19809417 19809454 -123977001 + MER54A LTR ERVL 102 138 -763 2140 108 7 3 chr12 19809471 19809766 -123976689 - AluSq SINE Alu -17 296 1 2193 234 18 0 chr12 19809785 19810226 -123976229 + MER54A LTR ERVL 453 901 0 1144 284 99 20 chr12 19810361 19811318 -123975137 - L1MEd LINE L1 -3193 2936 1937 301 225 34 28 chr12 19811537 19811715 -123974740 + (TA)n Simple_repeat Simple_repeat 2 180 0 648 304 36 18 chr12 19811780 19812381 -123974074 - L1MEd LINE L1 -4862 1257 700 562 272 27 22 chr12 19814468 19814652 -123971803 + MER5A DNA MER1_type 2 186 -3 317 336 27 20 chr12 19814859 19815005 -123971450 - L2 LINE L2 -183 3089 2943 205 147 0 0 chr12 19817194 19817228 -123969227 - L2 LINE L2 -2 3311 3278 236 316 64 59 chr12 19817245 19817432 -123969023 + MER5A DNA MER1_type 1 188 -1 31 26 0 0 chr12 19818295 19818333 -123968122 + AT_rich Low_complexity Low_complexity 1 38 0 204 143 0 0 chr12 19818782 19818824 -123967631 + (TC)n Simple_repeat Simple_repeat 1 42 0 2427 79 0 0 chr12 19819110 19819402 -123967053 + AluSc SINE Alu 2 293 -16 1555 276 76 11 chr12 19820813 19821353 -123965102 - L2 LINE L2 -865 2449 1875 17916 208 54 20 chr12 19821362 19823276 -123963179 + L1PA14 LINE L1 6 1855 -5744 2099 93 43 20 chr12 19823276 19823577 -123962878 - AluY SINE Alu -3 308 1 17916 208 54 20 chr12 19823577 19827001 -123959454 + L1PA14 LINE L1 1855 6167 -1432 291 28 0 0 chr12 19827001 19827037 -123959418 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 17916 208 54 20 chr12 19827037 19828399 -123958056 + L1PA14 LINE L1 6167 7482 -117 261 102 85 68 chr12 19828397 19828456 -123957999 + L1PA15 LINE L1 6104 6163 -2 * 23 54 0 0 chr12 19828495 19828532 -123957923 + AT_rich Low_complexity Low_complexity 1 37 0 455 246 152 11 chr12 19828539 19828730 -123957725 - L2 LINE L2 -1428 1886 1669 468 354 13 18 chr12 19828737 19828963 -123957492 - L2 LINE L2 -2708 606 382 280 309 32 16 chr12 19829435 19829561 -123956894 - MER20B DNA MER1_type -613 170 43 344 182 68 0 chr12 19829575 19829663 -123956792 - MER53 DNA DNA 0 189 96 341 211 53 0 chr12 19829728 19829804 -123956651 + MER91C DNA MER1_type 61 140 0 402 343 108 66 chr12 19830865 19832138 -123954317 - L2 LINE L2 -456 2858 1533 1666 176 14 100 chr12 19832138 19832559 -123953896 - MLT1B LTR MaLR -5 385 1 191 297 192 11 chr12 19832613 19832795 -123953660 - L2 LINE L2 -1855 1459 1245 1529 250 77 52 chr12 19833194 19833389 -123953066 + L1MDa LINE L1 1564 1753 -4968 2077 116 3 49 chr12 19833389 19833716 -123952739 + AluSp SINE Alu 1 312 -1 1529 250 77 52 chr12 19833716 19834410 -123952045 + L1MDa LINE L1 1753 2512 -4209 1181 73 0 11 chr12 19834528 19834707 -123951748 + (TTTCC)n Simple_repeat Simple_repeat 2 178 0 2077 119 3 0 chr12 19834723 19835017 -123951438 - AluSp SINE Alu -17 296 2 2933 169 94 13 chr12 19835026 19835835 -123950620 + MER41-int LTR ERV1 528 1489 -4457 1687 84 5 0 chr12 19835937 19836152 -123950303 - AluSp SINE Alu -97 216 1 1302 213 115 25 chr12 19836165 19836522 -123949933 + MLT1D LTR MaLR 117 505 0 531 234 101 43 chr12 19836564 19836773 -123949682 + L1MEc LINE L1 4 224 -6172 608 199 144 30 chr12 19837169 19837370 -123949085 + MER2 DNA MER2_type 122 345 0 1970 257 36 16 chr12 19837426 19838112 -123948343 - L1M4 LINE L1 -2211 3935 3236 784 240 14 5 chr12 19838162 19838379 -123948076 - L1M4 LINE L1 -3318 2828 2610 486 233 29 0 chr12 19838605 19838708 -123947747 + MER5A DNA MER1_type 84 189 0 468 221 39 94 chr12 19839177 19839358 -123947097 + L1ME LINE L1 5512 5682 -439 3380 49 11 16 chr12 19839845 19840296 -123946159 + L1PA8 LINE L1 5724 6172 0 269 292 108 15 chr12 19840300 19840430 -123946025 - L2 LINE L2 -389 2925 2784 830 289 62 62 chr12 19840551 19841063 -123945392 - L2 LINE L2 -556 2758 2247 2271 79 3 10 chr12 19841164 19841468 -123944987 - MLT2A1 LTR ERVL -142 302 1 180 200 0 0 chr12 19841817 19841862 -123944593 + (CAT)n Simple_repeat Simple_repeat 2 46 0 981 238 111 49 chr12 19841862 19842206 -123944249 + MLT1A1 LTR MaLR 1 365 0 335 319 72 0 chr12 19842222 19842360 -123944095 - MIR SINE MIR -40 222 75 309 352 38 19 chr12 19842406 19842565 -123943890 - MIR3 SINE MIR -24 184 23 925 230 0 0 chr12 19844494 19844672 -123941783 + MER45A DNA AcHobo 1 178 0 403 278 154 12 chr12 19844750 19844919 -123941536 + L2 LINE L2 3119 3311 -2 21 0 0 0 chr12 19845309 19845330 -123941125 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 19846241 19846270 -123940185 + AT_rich Low_complexity Low_complexity 1 29 0 10874 25 1 0 chr12 19846431 19848478 -123937977 + L1PA3 LINE L1 4099 6147 -8 227 29 57 0 chr12 19848496 19848531 -123937924 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 518 325 94 32 chr12 19848924 19849551 -123936904 + L1 LINE L1 2676 3412 -2734 515 256 82 54 chr12 19849663 19850120 -123936335 + L1 LINE L1 3520 3983 -2163 * 1885 119 3 22 chr12 19850111 19850423 -123936032 + L1MA5A LINE L1 5813 6118 -179 492 167 0 0 chr12 19850427 19850511 -123935944 - L1P LINE L1 -1561 4585 4502 * 592 164 79 29 chr12 19850510 19850650 -123935805 + L1 LINE L1 4598 4744 -1402 2198 223 86 12 chr12 19850655 19851327 -123935128 + L1PBa LINE L1 321 1042 -5821 8453 181 31 2 chr12 19851335 19854442 -123932013 + L1PBa LINE L1 1094 4440 -2422 21 0 0 0 chr12 19854448 19854469 -123931986 + AT_rich Low_complexity Low_complexity 1 21 0 503 281 152 23 chr12 19854648 19854865 -123931590 + MIR SINE MIR 5 249 -13 23 33 0 0 chr12 19855694 19855724 -123930731 + AT_rich Low_complexity Low_complexity 1 30 0 7468 25 2 10 chr12 19856133 19857542 -123928913 + L1PA4 LINE L1 4750 6152 -3 321 301 219 15 chr12 19857828 19858024 -123928431 - MIR SINE MIR -17 245 10 782 322 23 29 chr12 19859648 19859996 -123926459 + MARNA DNA Mariner 60 405 -181 2744 279 52 23 chr12 19860180 19861211 -123925244 + L2 LINE L2 2068 3119 -194 283 275 0 25 chr12 19861223 19861303 -123925152 + L2 LINE L2 3236 3313 0 281 291 55 36 chr12 19862349 19862459 -123923996 - MER5A DNA MER1_type -15 174 63 336 309 69 29 chr12 19863494 19863698 -123922757 + L2 LINE L2 2169 2380 -934 180 0 0 0 chr12 19863779 19863799 -123922656 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2285 141 3 5 chr12 19863800 19864154 -123922301 - L1PB1 LINE L1 -5 6146 5792 393 22 0 0 chr12 19864154 19864200 -123922255 + (TG)n Simple_repeat Simple_repeat 2 47 0 2285 141 3 5 chr12 19864200 19864215 -123922240 - L1PB1 LINE L1 -359 5792 5778 1216 104 38 0 chr12 19864269 19864452 -123922003 - L1PB1 LINE L1 -361 5790 5601 21 0 0 0 chr12 19865731 19865752 -123920703 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 19866805 19866842 -123919613 + AT_rich Low_complexity Low_complexity 1 37 0 1231 271 136 44 chr12 19867021 19868224 -123918231 + L1ME LINE L1 239 1528 -4552 1776 272 58 14 chr12 19868251 19868565 -123917890 - L1M4 LINE L1 -3057 3089 2790 2178 67 60 0 chr12 19868565 19868847 -123917608 - AluY SINE Alu -12 299 1 1776 272 58 14 chr12 19868847 19869317 -123917138 - L1M4 LINE L1 -3356 2790 2233 468 111 0 0 chr12 19869324 19869396 -123917059 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 405 319 69 81 chr12 19869439 19869759 -123916696 - L3 LINE CR1 -638 939 624 235 217 65 0 chr12 19870342 19870434 -123916021 + (TA)n Simple_repeat Simple_repeat 1 98 0 14864 223 33 16 chr12 19870752 19876358 -123910097 - L1MA7 LINE L1 -11 7699 2023 382 173 37 25 chr12 19876358 19876439 -123910016 - L1MA7 LINE L1 -5873 1613 1532 597 214 43 0 chr12 19877639 19877756 -123908699 + FLAM_A SINE Alu 2 123 -10 25 31 0 0 chr12 19877763 19877795 -123908660 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 73 0 chr12 19878821 19878876 -123907579 - L2 LINE L2 0 3313 3255 1682 167 73 3 chr12 19878952 19879240 -123907215 + AluSx SINE Alu 1 308 -4 284 313 18 9 chr12 19880069 19880181 -123906274 + Tigger1 DNA MER2_type 1040 1152 -1266 239 307 121 18 chr12 19880616 19880782 -123905673 - L2 LINE L2 -911 2403 2221 985 212 13 44 chr12 19880782 19881008 -123905447 + MER20 DNA MER1_type 1 219 0 447 212 126 13 chr12 19881093 19881244 -123905211 - MIR SINE MIR 0 262 95 258 94 94 62 chr12 19881244 19881308 -123905147 - MLT2B1 LTR ERVL 0 520 455 1645 200 105 64 chr12 19881349 19881805 -123904650 - MLT2B1 LTR ERVL -44 476 2 27054 165 49 48 chr12 19881806 19885049 -123901406 - ERVL-B1 LTR ERVL -7 5757 2506 2048 91 11 4 chr12 19885049 19885350 -123901105 - AluSp SINE Alu 0 307 5 27054 165 49 48 chr12 19885350 19887471 -123898984 - ERVL-B1 LTR ERVL -3258 2506 388 496 170 0 0 chr12 19887476 19887570 -123898885 - MLT2B2 LTR ERVL -421 94 1 225 383 21 0 chr12 19887570 19887664 -123898791 - MIR SINE MIR -163 99 4 189 0 0 0 chr12 19887777 19887798 -123898657 + (A)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr12 19887975 19888013 -123898442 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr12 19888764 19888835 -123897620 + AT_rich Low_complexity Low_complexity 1 71 0 2043 131 3 10 chr12 19890569 19890874 -123895581 - AluSq SINE Alu -10 303 1 1105 248 3 10 chr12 19890955 19891254 -123895201 - L1M4 LINE L1 -1014 5132 4836 390 21 0 0 chr12 19891612 19891659 -123894796 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 224 41 61 chr12 19893407 19893456 -123892999 + L2 LINE L2 3214 3261 -11 201 275 159 43 chr12 19893468 19893606 -123892849 - MIR SINE MIR -108 154 1 401 252 79 0 chr12 19894477 19894604 -123891851 - MIR SINE MIR -13 249 113 291 385 82 0 chr12 19894748 19894930 -123891525 - L2 LINE L2 -1899 1415 1219 379 238 167 33 chr12 19895760 19895970 -123890485 + L1ME4a LINE L1 5879 6116 -5 953 196 28 14 chr12 19896084 19896298 -123890157 + L1PA16 LINE L1 5950 6166 0 264 200 0 0 chr12 19896348 19896403 -123890052 - L1MA2 LINE L1 0 6304 6250 27 29 0 0 chr12 19897107 19897141 -123889314 + AT_rich Low_complexity Low_complexity 1 34 0 3563 239 42 157 chr12 19897865 19899122 -123887333 + L2 LINE L2 1200 2600 -713 279 0 0 0 chr12 19899122 19899153 -123887302 + (TC)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19899153 19899170 -123887285 + L2 LINE L2 2600 2617 -696 213 65 0 0 chr12 19899170 19899201 -123887254 + (TG)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19899201 19899471 -123886984 + L2 LINE L2 2617 2916 -397 441 0 0 0 chr12 19899471 19899520 -123886935 + (TG)n Simple_repeat Simple_repeat 2 50 0 3563 239 42 157 chr12 19899520 19900284 -123886171 + L2 LINE L2 2916 3240 -73 238 333 0 0 chr12 19900294 19900351 -123886104 + Zaphod DNA AcHobo 11 67 -3964 1218 320 75 33 chr12 19900376 19900848 -123885607 + MER115 DNA AcHobo 144 641 -52 2017 189 26 75 chr12 19900848 19901339 -123885116 + MLT1C LTR MaLR 1 467 0 1218 320 75 33 chr12 19901339 19901384 -123885071 + MER115 DNA AcHobo 641 683 -10 204 40 0 0 chr12 19901700 19901725 -123884730 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 19902556 19902584 -123883871 + AT_rich Low_complexity Low_complexity 1 28 0 3762 175 50 25 chr12 19904049 19904832 -123881623 + L1MC3 LINE L1 6884 7685 -100 5239 235 51 37 chr12 19904841 19904909 -123881546 + L1M4 LINE L1 2 68 -6578 1588 168 3 54 chr12 19904909 19905057 -123881398 + AluJo SINE Alu 2 156 -161 2066 110 34 0 chr12 19905057 19905349 -123881106 + AluSg1 SINE Alu 1 302 -7 1588 168 3 54 chr12 19905349 19905531 -123880924 + AluJo SINE Alu 156 317 0 5239 235 51 37 chr12 19905531 19907363 -123879092 + L1M4 LINE L1 68 1919 -4727 22 56 0 0 chr12 19907363 19907399 -123879056 + AT_rich Low_complexity Low_complexity 1 36 0 392 313 33 0 chr12 19907969 19908119 -123878336 - MIR SINE MIR -38 224 70 903 264 81 3 chr12 19908133 19908428 -123878027 - L1MC4 LINE L1 -141 7901 7584 1026 63 0 14 chr12 19908431 19908573 -123877882 - L1PA4 LINE L1 0 6155 6016 600 263 35 6 chr12 19908573 19908744 -123877711 + L1M4 LINE L1 1907 2082 -4564 7281 178 83 14 chr12 19908745 19910294 -123876161 + L1MB3 LINE L1 4 1658 -4726 4119 111 57 71 chr12 19910292 19911082 -123875373 + L1PA15 LINE L1 5374 6152 -13 * 2776 156 152 29 chr12 19911120 19911830 -123874625 + L1PA15-16 LINE L1 1645 2426 -3958 1450 212 17 3 chr12 19911818 19912120 -123874335 + L1MB3 LINE L1 4205 4510 -1872 * 1281 180 14 0 chr12 19912128 19912345 -123874110 - MER2 DNA MER2_type -124 221 2 3751 180 13 31 chr12 19912349 19913371 -123873084 + L1MB3 LINE L1 5216 6219 -200 4780 35 0 0 chr12 19913371 19913935 -123872520 + L1PA3 LINE L1 5591 6154 -1 23 0 0 0 chr12 19913935 19913958 -123872497 + AT_rich Low_complexity Low_complexity 1 23 0 1049 174 14 14 chr12 19913964 19914182 -123872273 + L1MB3 LINE L1 6202 6419 0 23 54 0 0 chr12 19914239 19914276 -123872179 + AT_rich Low_complexity Low_complexity 1 37 0 1085 103 0 81 chr12 19914276 19914422 -123872033 + AluSp SINE Alu 1 132 -181 2126 106 3 7 chr12 19914422 19914715 -123871740 + AluSc SINE Alu 3 294 -15 1085 103 0 81 chr12 19914715 19914742 -123871713 + AluSp SINE Alu 132 160 -153 1951 232 77 7 chr12 19914743 19915576 -123870879 + L1M4c LINE L1 2080 2976 -3406 411 208 40 0 chr12 19915577 19915678 -123870777 + L1MC3 LINE L1 7679 7783 -2 275 347 148 14 chr12 19916395 19916611 -123869844 - MIR SINE MIR -10 252 8 553 235 81 81 chr12 19917797 19918057 -123868398 - MIR SINE MIR 0 262 3 219 267 156 22 chr12 19918089 19918179 -123868276 - MIR SINE MIR -25 237 136 1653 152 49 85 chr12 19918220 19918429 -123868026 - MLT1A2 LTR MaLR 0 374 184 2134 95 3 43 chr12 19918429 19918733 -123867722 - AluSg SINE Alu -18 292 1 1653 152 49 85 chr12 19918733 19918911 -123867544 - MLT1A2 LTR MaLR -190 184 1 195 129 0 0 chr12 19919047 19919078 -123867377 + (CA)n Simple_repeat Simple_repeat 2 32 0 256 216 114 34 chr12 19919144 19919232 -123867223 - MIR3 SINE MIR -23 185 91 403 286 53 41 chr12 19919249 19919420 -123867035 + MIR SINE MIR 79 251 -11 213 121 0 0 chr12 19919423 19919456 -123866999 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1949 123 13 38 chr12 19919666 19919982 -123866473 + AluSg SINE Alu 1 308 -2 534 258 108 0 chr12 19920276 19920443 -123866012 - MER3 DNA MER1_type -8 201 17 1747 194 34 8 chr12 19920517 19920873 -123865582 - MLT1A1 LTR MaLR 0 365 1 561 284 63 29 chr12 19921452 19921691 -123864764 - LTR33 LTR ERVL -274 247 1 1628 230 148 27 chr12 19922330 19922857 -123863598 - MLT1E LTR MaLR -2 591 1 346 294 96 11 chr12 19923084 19923261 -123863194 + L2 LINE L2 3122 3313 0 508 288 69 42 chr12 19923392 19923772 -123862683 + MLT1H1 LTR MaLR 1 364 -178 613 245 0 20 chr12 19923785 19923936 -123862519 + MER3 DNA MER1_type 30 130 -79 3335 173 25 9 chr12 19924132 19924785 -123861670 + L1PB4 LINE L1 5490 6152 -4 392 343 30 34 chr12 19924884 19925117 -123861338 + MLT1K LTR MaLR 345 576 -12 681 251 30 6 chr12 19926170 19926337 -123860118 - MER5A DNA MER1_type 0 189 19 557 265 26 20 chr12 19926363 19926514 -123859941 + MER5B DNA MER1_type 27 178 0 245 254 16 0 chr12 19926651 19926714 -123859741 + (TG)n Simple_repeat Simple_repeat 1 64 0 2816 230 82 20 chr12 19927115 19928273 -123858182 - L1ME1 LINE L1 -5 6161 4934 2534 214 54 9 chr12 19929436 19929992 -123856463 - MER90 LTR ERV1 -11 603 23 233 365 0 0 chr12 19930018 19930092 -123856363 - L2 LINE L2 -194 3078 3005 21 0 0 0 chr12 19930423 19930444 -123856011 + AT_rich Low_complexity Low_complexity 1 21 0 630 221 147 30 chr12 19933200 19933431 -123853024 - MIR SINE MIR 0 262 5 1737 154 81 31 chr12 19933516 19933873 -123852582 + THE1C LTR MaLR 1 375 0 333 68 0 0 chr12 19934596 19934640 -123851815 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 233 17 33 chr12 19935583 19935643 -123850812 + L2 LINE L2 3214 3272 0 27 62 0 0 chr12 19936440 19936488 -123849967 + AT_rich Low_complexity Low_complexity 1 48 0 185 174 0 22 chr12 19937716 19937762 -123848693 + GA-rich Low_complexity Low_complexity 3 47 0 1557 70 74 5 chr12 19938108 19938323 -123848132 - MER30 DNA MER1_type 0 230 1 227 331 113 73 chr12 19938892 19938970 -123847485 - L2 LINE L2 0 3272 3199 1965 141 0 3 chr12 19938970 19939290 -123847165 - AluSq SINE Alu 0 319 1 227 331 113 73 chr12 19939290 19939361 -123847094 - L2 LINE L2 -73 3199 3116 405 361 65 31 chr12 19939737 19940092 -123846363 - L2 LINE L2 -616 2698 2332 237 330 33 22 chr12 19943361 19943543 -123842912 + HAL1b LINE L1 407 590 -758 266 0 0 29 chr12 19945088 19945123 -123841332 + (TA)n Simple_repeat Simple_repeat 1 34 0 318 261 94 39 chr12 19945797 19945977 -123840478 - L3 LINE CR1 -277 1300 1111 265 308 125 8 chr12 19946174 19946294 -123840161 + MIR3 SINE MIR 74 207 -1 250 239 14 14 chr12 19946890 19946961 -123839494 + MER112 DNA MER1_type 9 79 -181 720 103 0 0 chr12 19947010 19947117 -123839338 + (CTATT)n Simple_repeat Simple_repeat 4 110 0 1724 113 49 0 chr12 19947408 19947692 -123838763 - L1MA3 LINE L1 -1 6304 6007 477 286 138 61 chr12 19949196 19949573 -123836882 + MLT1K LTR MaLR 162 567 -21 2165 120 0 7 chr12 19949752 19950052 -123836403 - AluSx SINE Alu -14 298 1 363 315 87 7 chr12 19950226 19950375 -123836080 + L2 LINE L2 3152 3312 -1 26 0 0 0 chr12 19950931 19950957 -123835498 + AT_rich Low_complexity Low_complexity 1 26 0 313 237 52 74 chr12 19951307 19951442 -123835013 + L1M1 LINE L1 15 146 -7419 423 0 0 0 chr12 19951714 19951761 -123834694 + (TCC)n Simple_repeat Simple_repeat 2 48 0 240 341 87 24 chr12 19952771 19952897 -123833558 + MER5A DNA MER1_type 37 170 -19 1212 68 0 0 chr12 19952926 19953072 -123833383 - AluSg/x SINE Alu -10 302 157 408 315 119 31 chr12 19953130 19953473 -123832982 - Tigger8 DNA MER2_type -35 631 258 367 218 0 13 chr12 19953473 19953551 -123832904 + LTR24B LTR ERV1 1 77 -499 544 315 47 36 chr12 19953613 19953972 -123832483 + LTR24B LTR ERV1 207 569 -7 364 330 98 40 chr12 19954124 19954435 -123832020 - L2 LINE L2 -1211 2103 1757 1986 124 0 13 chr12 19954435 19954734 -123831721 - AluSq SINE Alu -18 295 1 364 330 98 40 chr12 19954734 19954870 -123831585 - L2 LINE L2 -1557 1757 1630 21 0 0 0 chr12 19955067 19955088 -123831367 + AT_rich Low_complexity Low_complexity 1 21 0 2079 129 0 0 chr12 19955691 19955978 -123830477 + AluSx SINE Alu 1 287 -25 313 252 93 66 chr12 19955993 19956055 -123830400 + L1MC4a LINE L1 5766 5825 -1983 2236 99 3 19 chr12 19956055 19956367 -123830088 + AluSx SINE Alu 4 310 -2 313 252 93 66 chr12 19956367 19956455 -123830000 + L1MC4a LINE L1 5825 5920 -1888 1666 234 80 28 chr12 19956902 19957367 -123829088 - MLT1D LTR MaLR -12 493 5 5546 192 21 35 chr12 19957991 19959708 -123826747 - L1MA9 LINE L1 -38 6274 4600 532 281 0 0 chr12 19959708 19959836 -123826619 + FLAM_C SINE Alu 2 129 -4 5546 192 21 35 chr12 19959836 19960292 -123826163 - L1MA9 LINE L1 -1712 4600 4139 2046 279 100 19 chr12 19960393 19960840 -123825615 - L2 LINE L2 -301 3012 2495 6641 36 0 0 chr12 19960840 19961668 -123824787 + L1PA4 LINE L1 5341 6168 0 2046 279 100 19 chr12 19961668 19961961 -123824494 - L2 LINE L2 -818 2495 2227 21 57 0 0 chr12 19962071 19962106 -123824349 + AT_rich Low_complexity Low_complexity 1 35 0 247 222 0 0 chr12 19962804 19962849 -123823606 + MER112 DNA MER1_type 203 247 -13 1029 179 42 24 chr12 19964781 19964993 -123821462 + MER20 DNA MER1_type 4 219 0 318 50 0 0 chr12 19965292 19965332 -123821123 + (GA)n Simple_repeat Simple_repeat 1 40 0 1767 60 5 0 chr12 19965507 19965725 -123820730 - AluY SINE Alu -10 301 83 428 246 37 52 chr12 19965735 19965907 -123820548 - FLAM_A SINE Alu 0 171 2 188 307 40 0 chr12 19967006 19967081 -123819374 - MIR SINE MIR -104 158 81 21 104 0 0 chr12 19967291 19967368 -123819087 + AT_rich Low_complexity Low_complexity 1 77 0 1095 314 103 35 chr12 19967536 19967907 -123818548 + L2 LINE L2 2155 2499 -815 1917 172 52 75 chr12 19967907 19968332 -123818123 + MER47B DNA MER2_type 4 418 0 1095 314 103 35 chr12 19968332 19968708 -123817747 + L2 LINE L2 2499 2953 -361 24 53 0 0 chr12 19969499 19969537 -123816918 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 19969741 19969762 -123816693 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 19969943 19969966 -123816489 + AT_rich Low_complexity Low_complexity 1 23 0 1925 251 39 20 chr12 19969984 19970559 -123815896 - L1ME3A LINE L1 -23 6147 5564 368 221 229 16 chr12 19970586 19970708 -123815747 + MIR SINE MIR 21 168 -94 429 281 165 0 chr12 19970807 19971049 -123815406 + L1ME4a LINE L1 5616 5897 -224 197 254 73 0 chr12 19971720 19971775 -123814680 + MER5C DNA MER1_type 31 89 -235 403 311 145 31 chr12 19971954 19972505 -123813950 + L2 LINE L2 2701 3309 -4 229 295 67 0 chr12 19972822 19972927 -123813528 + Tigger8 DNA MER2_type 379 490 -176 229 259 0 0 chr12 19975489 19975543 -123810912 - MIR SINE MIR -132 130 77 244 319 94 51 chr12 19975897 19976035 -123810420 + L2 LINE L2 2946 3089 -183 187 286 89 0 chr12 19976119 19976175 -123810280 + L2 LINE L2 3212 3272 -41 228 313 134 9 chr12 19976538 19976650 -123809805 + L2 LINE L2 3186 3311 -2 1532 194 7 14 chr12 19977171 19977455 -123809000 + AluJo SINE Alu 1 282 -30 27 29 0 0 chr12 19977455 19977489 -123808966 + AT_rich Low_complexity Low_complexity 1 34 0 302 358 102 47 chr12 19977666 19978281 -123808174 - L2 LINE L2 -406 2908 2260 205 330 156 27 chr12 19978281 19978505 -123807950 + MIR SINE MIR 1 253 -9 569 305 37 5 chr12 19980076 19980266 -123806189 - MIR SINE MIR -11 251 56 29 0 0 0 chr12 19980657 19980686 -123805769 + AT_rich Low_complexity Low_complexity 1 29 0 1637 252 51 43 chr12 19981250 19981758 -123804697 + LTR40a LTR ERVL 1 512 -7 9364 191 38 30 chr12 19982100 19982280 -123804175 - L1MA10 LINE L1 -1 6333 6156 1630 173 4 4 chr12 19982280 19982557 -123803898 - AluJb SINE Alu -33 279 3 9364 191 38 30 chr12 19982557 19984444 -123802011 - L1MA10 LINE L1 -178 6156 4287 264 30 0 0 chr12 19984444 19984477 -123801978 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2090 108 0 0 chr12 19984481 19984758 -123801697 - AluSx SINE Alu -35 277 1 9364 191 38 30 chr12 19984758 19985532 -123800923 - L1MA10 LINE L1 -2049 4285 3454 660 217 0 0 chr12 19985532 19985647 -123800808 - FLAM_C SINE Alu -18 115 1 9364 191 38 30 chr12 19985647 19986006 -123800449 - L1MA10 LINE L1 -2880 3454 3100 34 84 0 0 chr12 19986534 19986617 -123799838 + AT_rich Low_complexity Low_complexity 1 83 0 202 333 101 14 chr12 19986796 19986934 -123799521 + MIR SINE MIR 100 249 -13 357 62 0 0 chr12 19989576 19989624 -123796831 + (TG)n Simple_repeat Simple_repeat 1 48 0 252 0 0 0 chr12 19989623 19989651 -123796804 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 191 289 184 9 chr12 19989993 19990107 -123796348 - MIR SINE MIR -10 252 119 1792 210 22 0 chr12 19990140 19990497 -123795958 - MLT1A1 LTR MaLR 0 365 1 434 217 126 42 chr12 19990967 19991110 -123795345 - MER5A DNA MER1_type -28 161 7 777 276 68 19 chr12 19991613 19991983 -123794472 - L1ME4a LINE L1 -216 5905 5518 333 103 26 39 chr12 19992201 19992279 -123794176 + CT-rich Low_complexity Low_complexity 1 77 0 260 210 12 0 chr12 19992278 19992359 -123794096 + (CA)n Simple_repeat Simple_repeat 1 82 0 * 216 298 184 35 chr12 19992410 19992524 -123793931 + L2 LINE L2 3183 3313 0 195 355 154 5 chr12 19993494 19993714 -123792741 + L2 LINE L2 1317 1569 -1745 1314 169 13 17 chr12 19993758 19994030 -123792425 - AluJb SINE Alu 0 324 54 372 283 9 9 chr12 19994041 19994147 -123792308 - MIR SINE MIR -155 107 2 1683 169 34 9 chr12 19994422 19994771 -123791684 - L1MA10 LINE L1 -1 6333 5976 3924 111 31 5 chr12 19994988 19995593 -123790862 + L1PA15 LINE L1 5543 6163 -2 2266 109 0 0 chr12 19996048 19996360 -123790095 - AluSx SINE Alu 0 312 1 796 160 0 0 chr12 19996478 19996609 -123789846 - FLAM_C SINE Alu -2 131 1 350 306 21 49 chr12 19996699 19996843 -123789612 + MIR SINE MIR 7 146 -116 210 338 15 0 chr12 19996903 19996971 -123789484 + L2 LINE L2 3204 3272 0 327 276 230 11 chr12 19997306 19997480 -123788975 - LTR33 LTR ERVL -6 515 304 506 280 85 20 chr12 19997556 19997756 -123788699 - LTR33 LTR ERVL -306 215 3 532 282 107 32 chr12 19999369 19999586 -123786869 + L1ME LINE L1 5268 5467 -703 303 28 0 0 chr12 19999586 19999622 -123786833 + (TG)n Simple_repeat Simple_repeat 2 37 0 532 282 107 32 chr12 19999622 19999805 -123786650 + L1ME LINE L1 5467 5707 -463 200 313 7 33 chr12 20000099 20000249 -123786206 + A-rich Low_complexity Low_complexity 3 148 0 300 370 82 27 chr12 20002493 20002712 -123783743 - L2 LINE L2 0 3272 3042 405 304 0 9 chr12 20002825 20002940 -123783515 + LTR16A LTR ERVL 212 325 -125 741 163 98 49 chr12 20002948 20003132 -123783323 - MER58C DNA MER1_type -1 214 22 355 300 10 0 chr12 20003153 20003253 -123783202 + LTR16A LTR ERVL 338 438 -12 560 195 102 68 chr12 20003315 20003592 -123782863 + MER92B LTR ERV1 10 355 -199 416 91 91 0 chr12 20003592 20003656 -123782799 + MER41B LTR ERV1 1 70 -565 498 244 96 67 chr12 20003656 20003791 -123782664 - LTR28 LTR ERV1 0 1020 688 1489 225 67 114 chr12 20003856 20004638 -123781817 - LTR1B LTR ERV1 -81 745 1 3967 90 32 12 chr12 20004638 20005196 -123781259 + MER41B LTR ERV1 67 635 0 485 216 28 128 chr12 20005205 20005423 -123781032 + MER92C LTR ERV1 357 552 -2 3201 218 155 28 chr12 20005806 20007222 -123779233 - Charlie2a DNA MER1_type -38 2824 1228 867 236 73 9 chr12 20007265 20007592 -123778863 - Charlie2a DNA MER1_type -1767 1095 748 8068 146 47 1 chr12 20007636 20007770 -123778685 + Tigger1 DNA MER2_type 85 211 -2207 1922 122 7 46 chr12 20007770 20008074 -123778381 - AluSx SINE Alu -19 293 2 8068 146 47 1 chr12 20008074 20009280 -123777175 + Tigger1 DNA MER2_type 211 1487 -931 956 152 0 0 chr12 20009280 20009425 -123777030 - AluJb SINE Alu -167 145 1 34 0 0 0 chr12 20009616 20009650 -123776805 + AT_rich Low_complexity Low_complexity 1 34 0 2050 165 31 0 chr12 20009668 20010020 -123776435 - MER47A DNA MER2_type -1 365 3 22 70 0 0 chr12 20010078 20010121 -123776334 + AT_rich Low_complexity Low_complexity 1 43 0 30417 110 25 56 chr12 20010771 20017117 -123769338 + L1PA7 LINE L1 12 6151 -3 312 291 102 16 chr12 20017975 20018102 -123768353 - MIR3 SINE MIR -41 167 30 310 327 78 14 chr12 20018156 20018373 -123768082 - L3 LINE CR1 -346 1231 1001 237 65 0 0 chr12 20018999 20019030 -123767425 + (A)n Simple_repeat Simple_repeat 1 31 0 320 286 34 41 chr12 20019506 20019653 -123766802 - L1M4 LINE L1 -1445 4701 4556 461 283 146 31 chr12 20019659 20019885 -123766570 - MIR SINE MIR -8 254 3 382 281 208 22 chr12 20020370 20020683 -123765772 - L1M4 LINE L1 -2149 3997 3627 445 326 78 20 chr12 20020831 20021076 -123765379 - LTR33 LTR ERVL -157 364 106 1959 188 9 28 chr12 20021750 20022078 -123764377 - L1 LINE L1 -1128 5018 4698 191 88 29 0 chr12 20022078 20022112 -123764343 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1959 188 9 28 chr12 20022112 20022219 -123764236 - L1 LINE L1 -1448 4698 4591 2599 153 23 14 chr12 20022221 20023260 -123763195 + L1PA15 LINE L1 5030 6162 -3 24 32 0 0 chr12 20023412 20023443 -123763012 + AT_rich Low_complexity Low_complexity 1 31 0 760 304 45 13 chr12 20023588 20023969 -123762486 - L1ME3A LINE L1 -225 5945 5553 366 326 93 19 chr12 20024002 20024272 -123762183 - L1ME3A LINE L1 -3380 2766 2477 945 282 36 4 chr12 20024782 20025030 -123761425 - MIR SINE MIR 0 262 7 32 91 0 0 chr12 20025055 20025143 -123761312 + AT_rich Low_complexity Low_complexity 1 88 0 687 308 96 27 chr12 20025158 20025450 -123761005 + L2 LINE L2 3001 3312 -1 26 0 0 0 chr12 20026005 20026031 -123760424 + AT_rich Low_complexity Low_complexity 1 26 0 374 88 18 0 chr12 20026317 20026374 -123760081 - MLT1D LTR MaLR -1 504 447 7236 183 17 14 chr12 20026381 20027679 -123758776 + L1M1 LINE L1 15 1316 -6249 * 9502 115 12 68 chr12 20027676 20029394 -123757061 + L1PA8A LINE L1 2525 4146 -2000 2102 83 16 0 chr12 20029392 20029705 -123756750 - L1M1 LINE L1 -4822 2743 2426 * 7742 122 7 5 chr12 20029705 20031664 -123754791 + L1PA8A LINE L1 4169 6129 -2 7875 137 13 9 chr12 20031676 20032799 -123753656 + L1M1 LINE L1 2419 3554 -4011 3264 91 5 223 chr12 20032799 20033648 -123752807 + MER4A LTR ERV1 1 664 0 7875 137 13 9 chr12 20033648 20034208 -123752247 + L1M1 LINE L1 3554 4110 -3455 371 61 0 0 chr12 20034311 20034360 -123752095 + MER4B LTR ERV1 562 610 0 4477 207 13 103 chr12 20034362 20035028 -123751427 + L1M1 LINE L1 3544 4268 -3297 480 99 0 0 chr12 20035028 20035099 -123751356 + (TG)n Simple_repeat Simple_repeat 2 72 0 842 139 0 0 chr12 20035099 20035221 -123751234 - AluJb SINE Alu -190 122 1 4477 207 13 103 chr12 20035221 20035965 -123750490 + L1M1 LINE L1 4266 4938 -2627 44510 38 0 1 chr12 20035967 20042127 -123744328 + L1PA3 LINE L1 1 6152 -3 4500 170 23 0 chr12 20042117 20042941 -123743514 + L1M1 LINE L1 4891 5733 -1832 * 1375 161 99 0 chr12 20042942 20043185 -123743270 - MLT1D LTR MaLR -199 306 40 338 316 95 6 chr12 20043519 20043687 -123742768 + L1M4 LINE L1 2847 3029 -3117 213 65 0 0 chr12 20044389 20044420 -123742035 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 316 144 11 58 chr12 20044429 20044617 -123741838 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 63 0 0 chr12 20044648 20044711 -123741744 + AT_rich Low_complexity Low_complexity 1 63 0 23 78 0 0 chr12 20044803 20044854 -123741601 + AT_rich Low_complexity Low_complexity 1 51 0 566 307 48 84 chr12 20044907 20045464 -123740991 + L1M4 LINE L1 3803 4339 -1807 548 302 63 10 chr12 20045707 20045912 -123740543 - MIR SINE MIR -10 252 37 224 206 32 0 chr12 20046498 20046561 -123739894 + A-rich Low_complexity Low_complexity 2 66 0 22 80 0 0 chr12 20046674 20046724 -123739731 + AT_rich Low_complexity Low_complexity 1 50 0 26 74 0 0 chr12 20046814 20046868 -123739587 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr12 20046875 20046896 -123739559 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr12 20046970 20046992 -123739463 + AT_rich Low_complexity Low_complexity 1 22 0 369 287 8 16 chr12 20047265 20047394 -123739061 - MLT1H1 LTR MaLR 0 555 428 737 315 17 8 chr12 20047410 20047645 -123738810 - MLT1H1 LTR MaLR -254 301 65 647 316 59 19 chr12 20047722 20048029 -123738426 + LTR16B LTR ERVL 129 447 -17 237 198 40 40 chr12 20048034 20048135 -123738320 + (CTATA)n Simple_repeat Simple_repeat 3 103 0 249 178 44 0 chr12 20048146 20048191 -123738264 - MLT1H1 LTR MaLR -532 58 12 1268 123 5 0 chr12 20048674 20048861 -123737594 + MLT1C LTR MaLR 1 188 -279 1574 181 4 0 chr12 20048971 20049237 -123737218 + MLT1C LTR MaLR 199 465 -2 1459 264 40 11 chr12 20050556 20051082 -123735373 - L1M4 LINE L1 -1588 4558 4018 821 275 69 59 chr12 20051091 20051398 -123735057 + L2 LINE L2 2681 3001 -312 2474 58 0 16 chr12 20051398 20051706 -123734749 - AluY SINE Alu -8 303 1 821 275 69 59 chr12 20051706 20051938 -123734517 + L2 LINE L2 3001 3229 -84 243 0 0 0 chr12 20051994 20052021 -123734434 + (TA)n Simple_repeat Simple_repeat 1 27 0 821 160 0 0 chr12 20052310 20052429 -123734026 - FLAM_C SINE Alu -24 119 1 1781 162 0 7 chr12 20052547 20052831 -123733624 - AluJo SINE Alu -30 282 1 1991 160 0 0 chr12 20053638 20053938 -123732517 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr12 20054429 20054452 -123732003 + AT_rich Low_complexity Low_complexity 1 23 0 875 238 60 34 chr12 20056689 20056987 -123729468 + MER46C DNA MER2_type 18 323 -15 258 304 51 0 chr12 20057043 20057122 -123729333 + MIR SINE MIR 67 149 -113 311 293 95 34 chr12 20057943 20058090 -123728365 - MIR3 SINE MIR -12 196 41 25 31 0 0 chr12 20058469 20058501 -123727954 + AT_rich Low_complexity Low_complexity 1 32 0 2373 66 3 16 chr12 20060093 20060397 -123726058 - AluY SINE Alu -11 300 1 2265 103 3 0 chr12 20060429 20060729 -123725726 + AluSp SINE Alu 1 301 -12 815 253 134 40 chr12 20061560 20062001 -123724454 - MLT1H LTR MaLR 0 542 55 278 183 14 14 chr12 20062011 20062082 -123724373 - MLT1G LTR MaLR -9 581 511 855 360 81 29 chr12 20063465 20064454 -123722001 + ERVL LTR ERVL 4287 5326 -438 958 299 17 23 chr12 20064665 20065019 -123721436 + LTR16A LTR ERVL 7 358 -92 287 278 0 74 chr12 20065142 20065250 -123721205 - MIR SINE MIR -78 184 85 204 226 0 0 chr12 20065533 20065586 -123720869 + A-rich Low_complexity Low_complexity 1 53 0 201 369 0 0 chr12 20065758 20065823 -123720632 + GA-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 20066610 20066634 -123719821 + AT_rich Low_complexity Low_complexity 1 24 0 1637 184 32 0 chr12 20068568 20068846 -123717609 + AluJb SINE Alu 2 288 -24 321 291 118 24 chr12 20069097 20069224 -123717231 - MER5A DNA MER1_type 0 189 51 387 0 0 0 chr12 20069292 20069335 -123717120 + (CA)n Simple_repeat Simple_repeat 2 44 0 241 337 0 22 chr12 20069853 20069942 -123716513 + MIR SINE MIR 20 106 -102 240 198 198 12 chr12 20070136 20070217 -123716238 + MIR SINE MIR 101 196 -66 408 88 0 0 chr12 20071437 20071494 -123714961 + (CA)n Simple_repeat Simple_repeat 2 58 0 315 238 60 0 chr12 20072380 20072464 -123713991 + MIR SINE MIR 66 154 -108 16309 139 19 37 chr12 20072469 20073866 -123712589 - Tigger4(Zombi) DNA MER2_type -5 2726 1305 651 195 9 0 chr12 20073866 20073979 -123712476 - FLAM_C SINE Alu -19 114 1 16309 139 19 37 chr12 20073979 20074829 -123711626 - Tigger4(Zombi) DNA MER2_type -1426 1305 537 2128 103 7 13 chr12 20074829 20075129 -123711326 + AluSx SINE Alu 1 298 -14 16309 139 19 37 chr12 20075129 20075655 -123710800 - Tigger4(Zombi) DNA MER2_type -2194 537 3 588 204 0 9 chr12 20075702 20075815 -123710640 + FLAM_A SINE Alu 16 127 -15 950 194 75 5 chr12 20076098 20076299 -123710156 - MER20 DNA MER1_type 0 219 5 241 227 193 23 chr12 20076515 20076603 -123709852 + MIR SINE MIR 51 153 -109 4413 197 49 28 chr12 20076743 20078065 -123708390 - L1MA10 LINE L1 -1 6333 4974 4191 137 20 9 chr12 20078074 20078758 -123707697 - Tigger3b DNA MER2_type -526 705 14 1194 240 71 4 chr12 20078797 20079304 -123707151 - L1ME LINE L1 -501 5661 5121 701 280 139 51 chr12 20079314 20079725 -123706730 + L2 LINE L2 2867 3313 0 347 324 40 4 chr12 20079850 20080075 -123706380 - L1MEd LINE L1 -4991 1128 896 210 314 0 0 chr12 20080871 20080922 -123705533 - L2 LINE L2 -6 3266 3216 25 31 0 0 chr12 20081842 20081874 -123704581 + AT_rich Low_complexity Low_complexity 1 32 0 325 300 134 42 chr12 20082421 20082704 -123703751 - L2 LINE L2 0 3313 3005 10134 146 7 10 chr12 20082988 20084682 -123701773 + L1PA11 LINE L1 3337 5025 -1121 955 148 0 0 chr12 20084683 20084845 -123701610 - L1P LINE L1 -1392 4754 4593 6530 88 7 2 chr12 20084845 20085973 -123700482 + L1PA11 LINE L1 5033 6165 -9 27 29 0 0 chr12 20085973 20086007 -123700448 + AT_rich Low_complexity Low_complexity 1 34 0 243 125 0 0 chr12 20086640 20086680 -123699775 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr12 20087670 20087691 -123698764 + AT_rich Low_complexity Low_complexity 1 21 0 235 273 26 0 chr12 20088320 20088397 -123698058 + MER116 DNA Mariner 2 80 0 1502 198 40 69 chr12 20088574 20089055 -123697400 - LTR37B LTR ERV1 -1 467 1 2137 112 0 13 chr12 20089124 20089436 -123697019 + AluSx SINE Alu 1 308 -4 14797 192 60 9 chr12 20089975 20090285 -123696170 - L1PB1 LINE L1 -8 6859 6566 486 0 0 0 chr12 20090285 20090339 -123696116 + (TA)n Simple_repeat Simple_repeat 1 54 0 414 0 0 0 chr12 20090338 20090384 -123696071 + (GA)n Simple_repeat Simple_repeat 2 47 0 * 14797 192 60 9 chr12 20090339 20091743 -123694712 - L1PB1 LINE L1 -301 6566 5235 189 0 0 0 chr12 20091743 20091764 -123694691 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 14797 192 60 9 chr12 20091764 20095000 -123691455 - L1PB1 LINE L1 -1632 5235 1485 2292 113 0 0 chr12 20095000 20095311 -123691144 + AluSq SINE Alu 1 311 -2 14797 192 60 9 chr12 20095311 20096860 -123689595 - L1PB1 LINE L1 -5382 1485 17 25 0 0 0 chr12 20096884 20096909 -123689546 + AT_rich Low_complexity Low_complexity 1 25 0 1745 169 42 6 chr12 20097061 20097392 -123689063 + MER2 DNA MER2_type 1 343 -1 1335 279 82 60 chr12 20097533 20098131 -123688324 + L3 LINE CR1 320 930 -647 433 296 25 38 chr12 20098140 20098299 -123688156 + MIR SINE MIR 1 157 -105 610 294 69 9 chr12 20098486 20098719 -123687736 - MIR SINE MIR -5 257 11 210 338 60 20 chr12 20099977 20100128 -123686327 + L2 LINE L2 1865 2021 -1293 265 338 12 0 chr12 20100204 20100284 -123686171 - L2 LINE L2 -10 3303 3223 692 240 31 31 chr12 20100336 20100528 -123685927 + MIR SINE MIR 60 251 -11 250 266 16 16 chr12 20100909 20100973 -123685482 - L2 LINE L2 -4 3309 3246 2205 128 0 0 chr12 20101079 20101444 -123685011 + AluSx SINE Alu 1 365 0 200 273 0 0 chr12 20101480 20101524 -123684931 + L2 LINE L2 3217 3260 -12 2168 236 16 7 chr12 20101918 20102436 -123684019 + L1ME1 LINE L1 5655 6333 -1 223 378 27 14 chr12 20102630 20102778 -123683677 - L2 LINE L2 -993 2321 2172 637 203 105 14 chr12 20102962 20103130 -123683325 + MER39 LTR ERV1 7 144 -509 * 921 232 34 34 chr12 20103125 20103362 -123683093 + MER39 LTR ERV1 306 542 -165 543 197 45 38 chr12 20103364 20103496 -123682959 + FLAM_A SINE Alu 1 133 0 825 149 17 72 chr12 20103525 20103706 -123682749 + MER39 LTR ERV1 537 707 0 342 0 0 0 chr12 20103899 20103937 -123682518 + (A)n Simple_repeat Simple_repeat 1 38 0 299 241 45 98 chr12 20104312 20104424 -123682031 + MER5A DNA MER1_type 63 168 -21 431 299 105 40 chr12 20104444 20104892 -123681563 + L2 LINE L2 1791 2267 -1047 427 287 62 80 chr12 20105209 20105484 -123680971 - MLT1H LTR MaLR -198 351 82 21 0 0 0 chr12 20105697 20105718 -123680737 + AT_rich Low_complexity Low_complexity 1 21 0 5608 160 23 51 chr12 20106052 20107159 -123679296 + L1MA9 LINE L1 4217 5298 -1014 903 150 0 0 chr12 20107159 20107292 -123679163 + FLAM_C SINE Alu 1 133 0 5608 160 23 51 chr12 20107292 20107704 -123678751 + L1MA9 LINE L1 5298 5720 -592 1419 159 68 50 chr12 20107704 20107864 -123678591 + L1MA9 LINE L1 5986 6142 -170 327 49 0 0 chr12 20107864 20107905 -123678550 + (CA)n Simple_repeat Simple_repeat 2 42 0 1419 159 68 50 chr12 20107905 20108065 -123678390 + L1MA9 LINE L1 6142 6312 0 2916 266 131 19 chr12 20108079 20109361 -123677094 + L2 LINE L2 1835 3270 -43 778 230 49 11 chr12 20109369 20109764 -123676691 + MER34 LTR ERV1 41 540 -2 180 0 0 0 chr12 20111055 20111075 -123675380 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 453 165 153 0 chr12 20111304 20111389 -123675066 + FLAM_A SINE Alu 9 106 -36 449 0 0 35 chr12 20111412 20111470 -123674985 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 939 285 86 29 chr12 20112210 20113278 -123673177 - L1ME LINE L1 -648 5514 4378 624 245 10 139 chr12 20113310 20113604 -123672851 + MIR SINE MIR 1 256 -6 781 269 22 16 chr12 20113609 20113791 -123672664 - MLT1I LTR MaLR -2 407 225 809 251 49 0 chr12 20113866 20114049 -123672406 - MLT1I LTR MaLR -200 209 18 35 24 0 0 chr12 20114076 20114118 -123672337 + AT_rich Low_complexity Low_complexity 1 42 0 188 345 24 24 chr12 20114226 20114310 -123672145 - MIR SINE MIR -167 95 12 270 252 17 101 chr12 20114418 20114537 -123671918 - L1ME LINE L1 -1934 4212 4104 445 246 104 30 chr12 20114559 20115001 -123671454 - L1ME LINE L1 -694 5472 4985 207 0 0 0 chr12 20115324 20115347 -123671108 + (A)n Simple_repeat Simple_repeat 1 23 0 376 258 70 31 chr12 20115725 20115853 -123670602 + MIR SINE MIR 124 256 -6 332 292 35 26 chr12 20117860 20117973 -123668482 + MIR SINE MIR 20 133 -129 368 291 99 28 chr12 20118452 20118593 -123667862 + MIR SINE MIR 56 206 -56 313 87 43 0 chr12 20118602 20118672 -123667783 - Alu SINE Alu 0 309 238 2072 138 3 0 chr12 20120804 20121101 -123665354 + AluSx SINE Alu 1 298 -14 503 48 36 12 chr12 20121734 20121818 -123664637 + (TA)n Simple_repeat Simple_repeat 2 87 0 490 245 27 34 chr12 20121919 20122066 -123664389 - L2 LINE L2 -12 3301 3156 2247 110 0 0 chr12 20122369 20122678 -123663777 + AluSg1 SINE Alu 1 309 0 317 239 120 48 chr12 20122729 20122938 -123663517 + L1MEd LINE L1 991 1214 -4905 319 142 87 16 chr12 20122938 20123065 -123663390 + (TA)n Simple_repeat Simple_repeat 2 137 0 321 71 55 98 chr12 20123067 20123250 -123663205 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 234 116 23 0 chr12 20124585 20124628 -123661827 + MADE1 DNA Mariner 37 80 0 397 272 99 49 chr12 20125035 20125239 -123661216 + MIR SINE MIR 9 237 -25 2147 143 102 2 chr12 20126743 20127136 -123659319 - MSTB1 LTR MaLR 0 432 1 21 71 0 0 chr12 20127179 20127221 -123659234 + AT_rich Low_complexity Low_complexity 1 42 0 2213 117 0 10 chr12 20128310 20128619 -123657836 - MER1B DNA MER1_type -2 337 32 2121 119 13 7 chr12 20128675 20128977 -123657478 + AluSg SINE Alu 1 304 -6 317 309 151 22 chr12 20129045 20129184 -123657271 + L2 LINE L2 3116 3272 0 1658 148 9 62 chr12 20129866 20130191 -123656264 - MLT1B LTR MaLR -4 386 79 354 111 0 0 chr12 20130194 20130248 -123656207 + U2 snRNA snRNA 4 57 -131 * 534 115 19 77 chr12 20130243 20130347 -123656108 - MLT1B LTR MaLR -292 98 1 1690 185 6 23 chr12 20131596 20131938 -123654517 - MLT1A1 LTR MaLR -27 401 5 351 0 0 0 chr12 20132375 20132414 -123654041 + (CA)n Simple_repeat Simple_repeat 2 40 0 1201 274 110 68 chr12 20133555 20134118 -123652337 + MLT2E LTR ERVL 34 620 -8 30 45 0 0 chr12 20134198 20134242 -123652213 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 20134699 20134731 -123651724 + AT_rich Low_complexity Low_complexity 1 32 0 2230 318 73 28 chr12 20134750 20135927 -123650528 + ERVL LTR ERVL 802 2031 -3733 407 169 78 0 chr12 20135935 20136012 -123650443 + MSTC LTR MaLR 1 83 -345 2404 125 11 16 chr12 20137494 20137871 -123648584 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr12 20137936 20137968 -123648487 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 378 16 24 chr12 20138416 20138543 -123647912 - L2 LINE L2 -9 3304 3179 264 30 0 0 chr12 20138664 20138697 -123647758 + (TG)n Simple_repeat Simple_repeat 2 34 0 866 244 92 58 chr12 20139482 20139830 -123646625 + MLT1A1 LTR MaLR 6 365 0 39 50 0 0 chr12 20140804 20140864 -123645591 + AT_rich Low_complexity Low_complexity 1 60 0 25676 137 15 15 chr12 20141016 20143617 -123642838 - L1PA8A LINE L1 -1 6445 3844 198 0 0 0 chr12 20143617 20143639 -123642816 + (TGG)n Simple_repeat Simple_repeat 1 22 0 25676 137 15 15 chr12 20143639 20147428 -123639027 - L1PA8A LINE L1 -2602 3844 4 259 170 38 28 chr12 20147894 20148000 -123638455 + (TA)n Simple_repeat Simple_repeat 2 108 0 187 306 56 28 chr12 20149331 20149439 -123637016 - L3 LINE CR1 -12 1565 1455 226 250 42 159 chr12 20149950 20150300 -123636155 + L2 LINE L2 2739 3053 -219 1771 149 29 32 chr12 20150443 20150752 -123635703 + AluJb SINE Alu 1 308 -4 650 264 82 72 chr12 20151267 20151672 -123634783 - MLT1I LTR MaLR 0 409 1 1860 174 0 13 chr12 20152089 20152399 -123634056 + AluJb SINE Alu 5 310 -2 713 239 28 0 chr12 20153048 20153190 -123633265 + FRAM SINE Alu 1 146 -30 930 182 42 118 chr12 20153488 20153871 -123632584 - MLT1A1 LTR MaLR 0 365 1 286 204 11 68 chr12 20154759 20154847 -123631608 + L2 LINE L2 3190 3272 0 509 323 95 26 chr12 20155531 20155763 -123630692 - MIR SINE MIR -14 248 1 632 298 198 32 chr12 20156245 20156775 -123629680 + L3 LINE CR1 636 1253 -324 184 327 83 60 chr12 20156919 20157087 -123629368 - L2 LINE L2 -53 3219 3048 2505 125 31 76 chr12 20157126 20157615 -123628840 - MLT1C LTR MaLR 0 467 1 371 322 88 64 chr12 20158163 20158617 -123627838 - L2 LINE L2 -342 2972 2508 215 353 8 16 chr12 20158644 20158766 -123627689 - MER5A DNA MER1_type -1 188 68 261 350 119 14 chr12 20158851 20158994 -123627461 + L3 LINE CR1 1352 1509 -68 305 284 200 19 chr12 20159519 20159674 -123626781 + MIR SINE MIR 2 184 -78 1333 217 81 21 chr12 20160167 20160549 -123625906 - MLT1C LTR MaLR -4 463 59 205 218 109 0 chr12 20160834 20160889 -123625566 + MIR SINE MIR 200 260 -2 3286 152 75 0 chr12 20160889 20161449 -123625006 - MER7C DNA MER2_type 0 602 1 670 138 17 0 chr12 20161727 20161843 -123624612 - L1M2 LINE L1 -492 5808 5691 340 325 0 0 chr12 20162029 20162143 -123624312 - L1M3b LINE L1 -5552 729 616 233 259 25 12 chr12 20162115 20162196 -123624259 - L1M3b LINE L1 -5520 761 680 * 6107 174 37 13 chr12 20162194 20164378 -123622077 + L1MA7 LINE L1 3988 6291 0 235 343 0 14 chr12 20164918 20164988 -123621467 - MIR3 SINE MIR -126 82 14 227 149 0 21 chr12 20165099 20165146 -123621309 + (TTTCC)n Simple_repeat Simple_repeat 1 46 0 484 252 116 7 chr12 20165274 20165429 -123621026 - MIR SINE MIR -70 192 21 2132 146 0 0 chr12 20165531 20165840 -123620615 - AluSx SINE Alu -3 309 1 181 169 169 84 chr12 20166195 20166266 -123620189 + L3 LINE CR1 708 784 -793 328 304 62 27 chr12 20166442 20166554 -123619901 + L2 LINE L2 3155 3270 -2 2457 196 22 0 chr12 20168371 20168816 -123617639 + MLT2B1 LTR ERVL 1 455 -65 6457 89 14 1 chr12 20168830 20170060 -123616395 + L1PA11 LINE L1 4925 6166 -8 29 78 0 0 chr12 20170060 20170124 -123616331 + AT_rich Low_complexity Low_complexity 1 64 0 578 206 14 7 chr12 20170226 20170367 -123616088 + MER104 DNA Tc2 37 178 -2 1605 180 42 52 chr12 20170496 20170897 -123615558 + MLT2C1 LTR ERVL 1 397 0 551 285 102 68 chr12 20171014 20171385 -123615070 - L1MC4a LINE L1 -1736 6072 5715 447 19 0 0 chr12 20171385 20171437 -123615018 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 551 285 102 68 chr12 20171437 20171857 -123614598 - L1MC4a LINE L1 -2093 5715 5254 506 253 99 70 chr12 20172057 20172330 -123614125 - L1MC4a LINE L1 -1194 4952 4672 281 337 49 43 chr12 20172458 20172621 -123613834 + MIR3 SINE MIR 37 200 -8 269 196 181 38 chr12 20174541 20174674 -123611781 - MIR SINE MIR -80 182 31 2836 142 33 16 chr12 20175041 20175390 -123611065 - L1PB4 LINE L1 0 6156 5794 309 51 0 0 chr12 20175390 20175429 -123611026 + (TA)n Simple_repeat Simple_repeat 1 39 0 2836 142 33 16 chr12 20175429 20175593 -123610862 - L1PB4 LINE L1 -362 5794 5634 1913 120 7 3 chr12 20176259 20176559 -123609896 - L1MA3 LINE L1 -7 6298 5998 762 187 0 0 chr12 20177407 20177546 -123608909 - FLAM_C SINE Alu -4 139 1 650 296 42 35 chr12 20177863 20178123 -123608332 + LTR16C LTR ERVL 101 362 -129 410 269 128 58 chr12 20178486 20178917 -123607538 + HERV16 LTR ERVL 343 803 -4193 362 356 17 0 chr12 20179418 20179592 -123606863 + HERV16 LTR ERVL 1454 1630 -4024 518 309 0 0 chr12 20179592 20179741 -123606714 + HERV16 LTR ERVL 1736 1884 -3112 1980 326 74 40 chr12 20179901 20180677 -123605778 + HERV16 LTR ERVL 2124 2969 -2795 2430 107 11 8 chr12 20180677 20181031 -123605424 - THE1A LTR MaLR 0 355 1 1980 326 74 40 chr12 20181031 20181648 -123604807 + HERV16 LTR ERVL 2969 3564 -2200 2249 85 7 7 chr12 20182107 20182412 -123604043 + AluSc SINE Alu 1 305 -4 227 267 50 0 chr12 20182473 20182574 -123603881 + L1ME4a LINE L1 5982 6087 -34 288 167 111 0 chr12 20183515 20183587 -123602868 + MER116 DNA Mariner 1 80 0 1100 315 163 41 chr12 20184259 20185160 -123601295 + L2 LINE L2 1953 3080 -233 2240 67 49 0 chr12 20185160 20185444 -123601011 + AluY SINE Alu 3 300 -11 1100 315 163 41 chr12 20185444 20185691 -123600764 + L2 LINE L2 3080 3295 -18 258 288 0 25 chr12 20185992 20186072 -123600383 + HAL1 LINE L1 1 78 -2429 243 61 0 0 chr12 20187067 20187100 -123599355 + (TC)n Simple_repeat Simple_repeat 2 34 0 223 349 106 15 chr12 20188457 20188589 -123597866 + L2 LINE L2 2926 3069 -203 198 386 0 0 chr12 20188733 20188803 -123597652 + L2 LINE L2 3238 3307 -6 278 274 106 26 chr12 20189319 20189432 -123597023 + MIR SINE MIR 68 189 -73 245 170 18 125 chr12 20189740 20189852 -123596603 - L1ME4a LINE L1 -53 6068 5969 635 139 104 26 chr12 20190435 20190550 -123595905 - FLAM_C SINE Alu -9 124 1 324 0 0 0 chr12 20191307 20191343 -123595112 + (TG)n Simple_repeat Simple_repeat 2 37 0 687 316 64 37 chr12 20191762 20192218 -123594237 + L1MEd LINE L1 680 1147 -4972 2049 112 7 0 chr12 20192295 20192573 -123593882 + AluSx SINE Alu 1 280 -32 265 74 19 19 chr12 20192579 20192633 -123593822 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 491 48 0 0 chr12 20192774 20192836 -123593619 + AluY SINE Alu 1 62 -251 1270 137 11 0 chr12 20192836 20193046 -123593409 + AluSg/x SINE Alu 97 308 0 381 252 42 42 chr12 20193508 20193627 -123592828 - MIR SINE MIR -70 192 74 189 345 46 11 chr12 20194990 20195077 -123591378 - MIR SINE MIR -6 256 167 5914 60 0 0 chr12 20195308 20196044 -123590411 - L1PA8 LINE L1 -2 6170 5435 1883 154 0 29 chr12 20196070 20196376 -123590079 - AluSx SINE Alu -15 297 1 309 350 117 12 chr12 20196460 20196623 -123589832 - HAL1 LINE L1 -697 1810 1631 623 318 90 38 chr12 20196624 20197045 -123589410 - HAL1 LINE L1 -904 1603 1161 332 283 131 2 chr12 20198464 20198656 -123587799 + L1ME3 LINE L1 5924 6154 -8 1076 203 25 0 chr12 20198815 20199052 -123587403 + MER63 DNA MER1_type 811 1053 -7 503 207 124 33 chr12 20199330 20199451 -123587004 + FLAM_C SINE Alu 2 133 0 3918 120 28 0 chr12 20199484 20200099 -123586356 + L1PB3 LINE L1 5523 6154 0 35 54 0 0 chr12 20200644 20200700 -123585755 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr12 20201136 20201165 -123585290 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 20202881 20202907 -123583548 + AT_rich Low_complexity Low_complexity 1 26 0 531 316 86 6 chr12 20204752 20204926 -123581529 + MIR SINE MIR 52 239 -23 397 329 99 61 chr12 20204946 20205290 -123581165 + L3 LINE CR1 1220 1576 -1 298 313 121 0 chr12 20205580 20205679 -123580776 - L2 LINE L2 -4 3309 3199 377 309 10 27 chr12 20206808 20206970 -123579485 + MER5A DNA MER1_type 20 175 -3 1522 155 70 8 chr12 20207579 20207837 -123578618 + AluSx SINE Alu 1 274 -38 317 274 0 0 chr12 20207926 20207999 -123578456 + MLT1J LTR MaLR 112 184 -327 21291 149 32 22 chr12 20208463 20209233 -123577222 - L1MA3 LINE L1 0 7724 6963 2059 116 16 26 chr12 20209233 20209544 -123576911 + AluSx SINE Alu 1 308 -4 21291 149 32 22 chr12 20209544 20216409 -123570046 - L1MA3 LINE L1 -761 6963 11 680 174 79 17 chr12 20217325 20217503 -123568952 + MER53 DNA DNA 1 189 0 281 311 57 16 chr12 20219107 20219229 -123567226 - MIR3 SINE MIR -73 135 9 2293 180 14 5 chr12 20219547 20219970 -123566485 + MLT2B1 LTR ERVL 3 429 -91 231 88 0 0 chr12 20220138 20220172 -123566283 + (T)n Simple_repeat Simple_repeat 1 34 0 412 290 13 62 chr12 20221939 20222136 -123564319 + MER5A DNA MER1_type 1 189 0 243 315 11 11 chr12 20222443 20222532 -123563923 + MIR SINE MIR 47 135 -127 192 77 0 0 chr12 20223893 20223919 -123562536 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr12 20224966 20224994 -123561461 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 20225043 20225063 -123561392 + (A)n Simple_repeat Simple_repeat 1 20 0 2222 99 0 7 chr12 20225279 20225573 -123560882 + AluSg SINE Alu 2 293 -17 329 259 30 30 chr12 20225578 20225713 -123560742 - L1MC4 LINE L1 -1339 6983 1949 406 323 96 12 chr12 20226151 20226318 -123560137 + MER5A DNA MER1_type 7 187 -2 2361 174 83 10 chr12 20226556 20227038 -123559417 - LTR40a LTR ERVL -2 517 1 2155 241 133 46 chr12 20227121 20227886 -123558569 + L2 LINE L2 2039 2736 -577 2243 196 38 18 chr12 20227886 20228381 -123558074 - MLT1D LTR MaLR 0 505 1 2155 241 133 46 chr12 20228381 20228532 -123557923 + L2 LINE L2 2736 2872 -441 2033 108 40 77 chr12 20228532 20228606 -123557849 - THE1B LTR MaLR 0 364 289 2080 77 44 4 chr12 20228606 20228911 -123557544 + AluY SINE Alu 1 316 0 2033 108 40 77 chr12 20228911 20229213 -123557242 - THE1B LTR MaLR -75 289 1 2155 241 133 46 chr12 20229213 20229457 -123556998 + L2 LINE L2 2872 3309 -4 269 191 90 45 chr12 20230195 20230284 -123556171 + MER34 LTR ERV1 438 530 -12 4139 122 11 9 chr12 20230366 20231000 -123555455 - MER41B LTR ERV1 0 635 1 3318 125 82 16 chr12 20231477 20232051 -123554404 - LTR9 LTR ERV1 0 612 1 180 221 0 59 chr12 20232702 20232770 -123553685 + L2 LINE L2 3024 3087 -226 856 197 13 40 chr12 20232810 20233038 -123553417 - MER34 LTR ERV1 0 542 321 2077 143 36 51 chr12 20233048 20233516 -123552939 + LTR2B LTR ERV1 1 461 -29 284 279 0 13 chr12 20233695 20233774 -123552681 - MER39 LTR ERV1 -624 83 6 586 259 0 60 chr12 20233800 20233985 -123552470 + L2 LINE L2 3117 3290 -23 582 173 0 0 chr12 20233986 20234119 -123552336 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 4000 165 14 11 chr12 20234445 20235155 -123551300 - MER50 LTR ERV1 -22 712 1 869 182 47 9 chr12 20235645 20235859 -123550596 + L1M4 LINE L1 4774 4995 -1151 * 5258 122 42 3 chr12 20235856 20236817 -123549638 + L1MA8 LINE L1 5231 6227 -64 666 271 53 21 chr12 20236817 20237101 -123549354 + MSTC LTR MaLR 1 293 -135 781 151 0 7 chr12 20237103 20237242 -123549213 + L1M2 LINE L1 5430 5567 -724 401 165 50 71 chr12 20237284 20237466 -123548989 + (TATG)n Simple_repeat Simple_repeat 1 178 0 739 175 26 91 chr12 20237530 20237684 -123548771 - MLT1A1 LTR MaLR -13 383 217 234 233 0 0 chr12 20237669 20237712 -123548743 + Alu SINE Alu 136 178 -130 * 1020 178 12 136 chr12 20238789 20239120 -123547335 - MLT1A1 LTR MaLR 0 365 76 985 192 0 20 chr12 20239120 20239318 -123547137 - AluJo SINE Alu -2 310 117 348 163 0 9 chr12 20239321 20239384 -123547071 - Alu SINE Alu -244 56 1 198 0 0 0 chr12 20239510 20239532 -123546923 + (A)n Simple_repeat Simple_repeat 1 22 0 1792 186 15 0 chr12 20240304 20240642 -123545813 + MER2 DNA MER2_type 1 343 -1 326 258 0 0 chr12 20243575 20243641 -123542814 + tRNA-Ile-ATT tRNA tRNA 9 74 -3 753 244 64 50 chr12 20244798 20245081 -123541374 + MLT1I LTR MaLR 20 306 -103 808 156 0 0 chr12 20245371 20245499 -123540956 + FLAM_C SINE Alu 1 128 -5 1786 194 0 6 chr12 20246031 20246345 -123540110 - AluJo SINE Alu 0 312 1 738 278 161 44 chr12 20246598 20247076 -123539379 - LTR67 LTR ERVL -4 553 20 407 260 221 16 chr12 20247597 20247921 -123538534 - L1MEc LINE L1 -5132 1815 1327 1963 140 0 20 chr12 20248238 20248531 -123537924 + AluSx SINE Alu 1 287 -25 384 22 0 0 chr12 20248534 20248579 -123537876 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 408 326 72 9 chr12 20248783 20249102 -123537353 - L1MEc LINE L1 -6023 1115 777 2363 110 0 0 chr12 20250178 20250488 -123535967 - AluSg SINE Alu 0 310 1 190 297 144 0 chr12 20250797 20250915 -123535540 - L2 LINE L2 -6 3307 3173 249 141 16 62 chr12 20251091 20251155 -123535300 - MER116 DNA Mariner 0 80 20 2852 6 0 28 chr12 20251155 20251480 -123534975 - AluYb8 SINE Alu 0 318 3 1714 180 0 35 chr12 20251595 20251912 -123534543 + AluJo SINE Alu 1 306 -6 2171 107 10 0 chr12 20252010 20252309 -123534146 + AluSx SINE Alu 1 302 -10 405 256 120 0 chr12 20252363 20252488 -123533967 - MIR SINE MIR -71 191 52 24 53 0 0 chr12 20252676 20252714 -123533741 + AT_rich Low_complexity Low_complexity 1 38 0 204 324 111 20 chr12 20253889 20254142 -123532313 + L2 LINE L2 1799 2074 -1240 206 227 15 45 chr12 20255023 20255089 -123531366 + CT-rich Low_complexity Low_complexity 2 65 0 1166 276 4 0 chr12 20257685 20257935 -123528520 + MIR SINE MIR 2 252 -10 1093 229 54 23 chr12 20258006 20258360 -123528095 + LTR40a LTR ERVL 155 519 0 258 272 0 0 chr12 20258371 20258452 -123528003 + L1ME2 LINE L1 3348 3428 -2718 2023 254 23 7 chr12 20258455 20259256 -123527199 + L1ME2 LINE L1 5062 5873 -293 30 69 0 0 chr12 20259688 20259746 -123526709 + GC_rich Low_complexity Low_complexity 1 58 0 185 0 40 0 chr12 20260159 20260184 -123526271 + (GGA)n Simple_repeat Simple_repeat 3 28 0 2182 120 0 3 chr12 20261895 20262186 -123524269 - AluSq SINE Alu -23 290 1 506 277 34 5 chr12 20262186 20262357 -123524098 + L1ME2 LINE L1 5921 6091 -71 284 349 86 0 chr12 20262480 20262632 -123523823 + MIR SINE MIR 73 237 -25 10342 129 37 27 chr12 20263345 20265173 -123521282 - Tigger1 DNA MER2_type -572 1846 1 355 311 67 7 chr12 20265173 20265308 -123521147 + MIR SINE MIR 5 147 -115 255 204 0 0 chr12 20265333 20265387 -123521068 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr12 20265889 20265916 -123520539 + (T)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr12 20266009 20266037 -123520418 + GC_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr12 20267461 20267505 -123518950 + (TG)n Simple_repeat Simple_repeat 2 45 0 2218 112 7 3 chr12 20268059 20268355 -123518100 + AluSq SINE Alu 1 297 -16 436 245 72 29 chr12 20268506 20268645 -123517810 + MIR SINE MIR 30 174 -88 2239 88 0 33 chr12 20268754 20269059 -123517396 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr12 20269160 20269183 -123517272 + (TA)n Simple_repeat Simple_repeat 2 24 0 2199 104 3 7 chr12 20269915 20270213 -123516242 - AluSc SINE Alu -12 297 1 1590 168 7 58 chr12 20270257 20270420 -123516035 - AluJo SINE Alu -14 298 157 2370 97 0 0 chr12 20270420 20270718 -123515737 - AluSc SINE Alu -11 298 1 1590 168 7 58 chr12 20270718 20270864 -123515591 - AluJo SINE Alu -155 157 5 2018 147 3 0 chr12 20271347 20271647 -123514808 - AluJb SINE Alu -11 301 1 27 62 0 0 chr12 20271688 20271736 -123514719 + AT_rich Low_complexity Low_complexity 1 48 0 2302 100 3 0 chr12 20273604 20273904 -123512551 + AluSx SINE Alu 1 301 -11 276 353 75 40 chr12 20274082 20274255 -123512200 - MIR SINE MIR -50 212 34 21 0 0 0 chr12 20274577 20274598 -123511857 + AT_rich Low_complexity Low_complexity 1 21 0 260 308 0 0 chr12 20276006 20276071 -123510384 + CT-rich Low_complexity Low_complexity 2 66 0 654 132 93 39 chr12 20276885 20277014 -123509441 + FRAM SINE Alu 24 159 -17 1564 173 23 47 chr12 20277016 20277316 -123509139 + AluJo SINE Alu 1 293 -19 22 35 0 0 chr12 20277316 20277345 -123509110 + AT_rich Low_complexity Low_complexity 1 29 0 2315 52 18 0 chr12 20277357 20277643 -123508812 - AluY SINE Alu -20 291 1 414 311 112 31 chr12 20277892 20278053 -123508402 - MER91A DNA MER1_type -18 178 5 847 284 86 0 chr12 20278213 20278445 -123508010 + MIR SINE MIR 1 252 -10 2373 100 0 0 chr12 20278599 20278909 -123507546 + AluSg SINE Alu 1 310 0 343 312 8 16 chr12 20280179 20280304 -123506151 - MIR SINE MIR -94 168 45 385 296 45 18 chr12 20281335 20281555 -123504900 + L1ME3A LINE L1 2395 2620 -3526 563 240 7 27 chr12 20281693 20281843 -123504612 - MER58C DNA MER1_type -68 147 1 872 152 8 0 chr12 20281888 20282020 -123504435 + FLAM_C SINE Alu 1 133 -10 1689 245 75 109 chr12 20282032 20282071 -123504384 + L1ME3A LINE L1 3357 3396 -2774 2010 151 3 0 chr12 20282071 20282375 -123504080 + AluSx SINE Alu 1 305 -7 1689 245 75 109 chr12 20282375 20285123 -123501332 + L1ME3A LINE L1 3396 6047 -123 3320 78 2 21 chr12 20285123 20285462 -123500993 - L1PA14 LINE L1 -1 6160 5831 1996 100 0 15 chr12 20285462 20285732 -123500723 - AluSc SINE Alu -9 300 35 3320 78 2 21 chr12 20285732 20285868 -123500587 - L1PA14 LINE L1 -330 5831 5694 1689 245 75 109 chr12 20285868 20285898 -123500557 + L1ME3A LINE L1 6047 6077 -93 2394 96 0 6 chr12 20285932 20286244 -123500211 - AluSx SINE Alu -2 310 1 1136 151 14 119 chr12 20286864 20287149 -123499306 + AluJo SINE Alu 39 293 -19 181 364 0 0 chr12 20289899 20289965 -123496490 - L2 LINE L2 -451 2863 2798 991 266 89 51 chr12 20290398 20290872 -123495583 + MLT1J LTR MaLR 1 492 -19 227 234 0 0 chr12 20291026 20291073 -123495382 + MLT1I LTR MaLR 98 144 -265 260 193 26 13 chr12 20291266 20291344 -123495111 + MLT1H LTR MaLR 317 546 -3 2104 106 28 0 chr12 20291510 20291792 -123494663 + AluSx SINE Alu 1 290 -22 203 175 0 0 chr12 20292141 20292181 -123494274 + T-rich Low_complexity Low_complexity 1 40 0 293 206 262 16 chr12 20292395 20292521 -123493934 + MLT2E LTR ERVL 296 452 -176 2142 135 3 3 chr12 20292648 20292960 -123493495 - AluSx SINE Alu 0 312 1 1817 168 21 0 chr12 20293192 20293483 -123492972 + AluJo SINE Alu 2 298 -14 489 53 0 40 chr12 20293999 20294075 -123492380 + L1PA7 LINE L1 6082 6154 0 1798 201 16 26 chr12 20294314 20294692 -123491763 - MLT1A2 LTR MaLR 0 374 1 1388 249 73 39 chr12 20295569 20296034 -123490421 - MLT1H1 LTR MaLR 0 555 75 883 233 138 63 chr12 20297104 20297546 -123488909 - MLT1H LTR MaLR -1 548 74 489 34 0 0 chr12 20298081 20298140 -123488315 + (TA)n Simple_repeat Simple_repeat 1 59 0 832 129 0 0 chr12 20298404 20298528 -123487927 + AluJb SINE Alu 180 303 -9 2916 132 43 62 chr12 20299356 20299653 -123486802 - L1MB4 LINE L1 -1 6179 5899 2367 66 0 7 chr12 20299653 20299956 -123486499 - AluY SINE Alu -10 301 1 2916 132 43 62 chr12 20299956 20300266 -123486189 - L1MB4 LINE L1 -281 5899 5584 1074 185 5 5 chr12 20300282 20300471 -123485984 - AluJo SINE Alu -19 293 105 1744 142 4 4 chr12 20301043 20301297 -123485158 + AluJb SINE Alu 1 254 -58 1577 150 61 64 chr12 20301986 20302149 -123484306 + AluJo SINE Alu 1 164 -148 2421 77 0 3 chr12 20302149 20302448 -123484007 + AluY SINE Alu 1 298 -13 1000 141 0 0 chr12 20302448 20302597 -123483858 + FRAM SINE Alu 1 40 0 872 167 0 29 chr12 20302630 20302768 -123483687 + AluJo SINE Alu 1 134 -178 716 104 0 0 chr12 20303123 20303594 -123482861 + AluSx SINE Alu 3 473 0 931 120 0 22 chr12 20303411 20303633 -123482822 + (GAAA)n Simple_repeat Simple_repeat 2 219 0 306 0 0 0 chr12 20303924 20303958 -123482497 + (TG)n Simple_repeat Simple_repeat 2 35 0 1883 189 113 0 chr12 20304188 20304569 -123481886 - MSTB LTR MaLR -2 424 1 1528 189 35 7 chr12 20304593 20304879 -123481576 + AluJo SINE Alu 1 294 -18 225 321 12 12 chr12 20305178 20305259 -123481196 + L3 LINE CR1 1473 1553 -24 712 289 88 29 chr12 20305444 20305538 -123480917 - L1ME4a LINE L1 -5 6116 6029 2182 122 0 0 chr12 20305538 20305825 -123480630 + AluSx SINE Alu 1 287 -25 712 289 88 29 chr12 20305825 20306312 -123480143 - L1ME4a LINE L1 -92 6029 5501 293 197 26 66 chr12 20306383 20306459 -123479996 + L2 LINE L2 3241 3313 0 810 243 6 0 chr12 20306618 20306795 -123479660 + MER45A DNA AcHobo 1 178 0 2281 115 0 3 chr12 20307592 20307904 -123478551 - AluSq SINE Alu -2 311 1 2017 127 0 3 chr12 20308238 20308544 -123477911 - AluSg SINE Alu 0 305 1 295 224 158 0 chr12 20309012 20309088 -123477367 - L2 LINE L2 -1 3271 3184 938 277 52 47 chr12 20309088 20309554 -123476901 - MLT1J LTR MaLR 0 511 44 209 254 0 75 chr12 20310794 20310861 -123475594 - L2 LINE L2 0 3272 3211 24 0 0 0 chr12 20310927 20310951 -123475504 + AT_rich Low_complexity Low_complexity 1 24 0 262 61 41 0 chr12 20311410 20311459 -123474996 + (TA)n Simple_repeat Simple_repeat 2 52 0 327 387 61 11 chr12 20311896 20312077 -123474378 - L2 LINE L2 -189 3083 2894 370 315 112 52 chr12 20312153 20312610 -123473845 - L2 LINE L2 -531 2783 2219 405 330 27 5 chr12 20312614 20312799 -123473656 - MER5A DNA MER1_type 0 189 1 373 283 65 28 chr12 20312806 20313053 -123473402 - L2 LINE L2 -1262 2052 1797 348 288 55 68 chr12 20313450 20313596 -123472859 - MIR3 SINE MIR -62 146 3 1766 174 3 20 chr12 20314433 20314737 -123471718 + AluSx SINE Alu 1 299 -13 320 292 68 30 chr12 20316392 20316578 -123469877 + MIR3 SINE MIR 3 192 -70 2400 66 7 0 chr12 20316845 20317150 -123469305 - AluY SINE Alu -4 307 1 2541 52 0 0 chr12 20317377 20317686 -123468769 - AluY SINE Alu -2 309 1 421 282 61 0 chr12 20317700 20317881 -123468574 + L1ME4a LINE L1 5602 5793 -328 411 322 192 9 chr12 20317895 20318109 -123468346 + MIR SINE MIR 8 260 -2 397 293 29 29 chr12 20318230 20318404 -123468051 + L1ME4a LINE L1 5947 6120 -1 2514 50 0 0 chr12 20318517 20318816 -123467639 - AluY SINE Alu -8 303 5 41 30 0 15 chr12 20319885 20319910 -123466545 + AT_rich Low_complexity Low_complexity 1 25 -40 1152 84 0 0 chr12 20319910 20320064 -123466391 + L1PB1 LINE L1 5997 6150 -1 41 30 0 15 chr12 20320064 20320104 -123466351 + AT_rich Low_complexity Low_complexity 25 65 0 1971 147 0 13 chr12 20320327 20320626 -123465829 + AluSx SINE Alu 3 297 -15 209 321 12 12 chr12 20321410 20321491 -123464964 - L2 LINE L2 -213 3059 2979 591 349 144 23 chr12 20321673 20322320 -123464135 - L2 LINE L2 -561 2753 1961 2187 118 3 7 chr12 20322320 20322625 -123463830 - AluSx SINE Alu -7 305 2 591 349 144 23 chr12 20322625 20322894 -123463561 - L2 LINE L2 -1353 1961 1726 186 161 0 0 chr12 20323571 20323602 -123462853 - MIR SINE MIR -8 254 224 260 357 18 30 chr12 20323602 20323770 -123462685 - L2 LINE L2 -159 3113 2948 262 169 0 62 chr12 20323808 20323873 -123462582 - L2 LINE L2 -660 2654 2594 2378 75 9 25 chr12 20323929 20324247 -123462208 - AluSp SINE Alu 0 313 1 2254 210 11 11 chr12 20324403 20324870 -123461585 + MLT1C LTR MaLR 1 467 0 741 283 50 35 chr12 20325646 20325929 -123460526 - MLT1I LTR MaLR -7 402 116 287 271 45 39 chr12 20326143 20326298 -123460157 - MER103 DNA DNA -2 164 9 23 33 0 0 chr12 20326412 20326442 -123460013 + AT_rich Low_complexity Low_complexity 1 30 0 1681 174 0 27 chr12 20326691 20327013 -123459442 - AluJb SINE Alu 0 312 1 21 36 0 0 chr12 20327234 20327262 -123459193 + AT_rich Low_complexity Low_complexity 1 28 0 2128 121 0 10 chr12 20327741 20328039 -123458416 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr12 20328062 20328101 -123458354 + AT_rich Low_complexity Low_complexity 1 39 0 212 167 24 0 chr12 20328109 20328151 -123458304 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 220 191 0 0 chr12 20328146 20328188 -123458267 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr12 20330113 20330136 -123456319 + (A)n Simple_repeat Simple_repeat 1 23 0 2060 144 7 0 chr12 20330241 20330546 -123455909 - AluSx SINE Alu -5 307 1 2090 133 3 19 chr12 20331386 20331703 -123454752 + AluSx SINE Alu 1 312 0 809 161 84 7 chr12 20331936 20332079 -123454376 + FRAM SINE Alu 1 145 -31 4643 73 5 8 chr12 20332341 20332928 -123453527 + SVA Other Other 802 1386 0 2459 67 0 0 chr12 20333928 20334225 -123452230 - AluSg SINE Alu -13 297 1 1050 198 0 6 chr12 20334353 20334535 -123451920 - AluJo SINE Alu -12 300 120 1668 126 0 0 chr12 20334833 20335063 -123451392 + AluSg/x SINE Alu 80 309 -1 1773 177 19 19 chr12 20336016 20336327 -123450128 + AluJo SINE Alu 2 312 0 453 81 0 0 chr12 20336780 20336842 -123449613 + (TA)n Simple_repeat Simple_repeat 1 62 0 1687 184 54 3 chr12 20337107 20337439 -123449016 - MLT1C LTR MaLR 0 467 119 * 2023 189 78 25 chr12 20337433 20337999 -123448456 + LTR1B LTR ERV1 231 826 0 595 277 131 18 chr12 20338326 20338654 -123447801 + MLT1G1 LTR MaLR 231 595 0 1259 148 14 23 chr12 20338813 20339029 -123447426 + L1PB4 LINE L1 5938 6151 -5 1812 160 3 7 chr12 20339032 20339335 -123447120 - AluJb SINE Alu 0 302 1 355 366 41 5 chr12 20339368 20339562 -123446893 + MIR SINE MIR 61 261 -1 634 355 96 15 chr12 20339586 20339994 -123446461 - L2 LINE L2 -6 3266 2826 581 301 75 25 chr12 20341833 20342072 -123444383 + MIR SINE MIR 6 256 -6 853 323 92 11 chr12 20342090 20342802 -123443653 - L2 LINE L2 -1 3312 2524 1876 169 0 3 chr12 20342819 20343115 -123443340 + AluJb SINE Alu 1 295 -17 1218 204 5 0 chr12 20344233 20344454 -123442001 - AluJo SINE Alu -6 306 85 453 355 62 5 chr12 20344718 20344929 -123441526 - MIR SINE MIR -12 250 28 339 311 23 15 chr12 20345283 20345415 -123441040 + MLT1J LTR MaLR 2 134 -377 2169 181 106 53 chr12 20345445 20345916 -123440539 - MER92B LTR ERV1 0 636 125 2154 124 134 11 chr12 20345916 20346296 -123440159 - MSTA LTR MaLR 0 428 2 2169 181 106 53 chr12 20346296 20346428 -123440027 - MER92B LTR ERV1 -511 125 1 427 205 18 94 chr12 20346505 20346676 -123439779 + MLT1J LTR MaLR 318 475 -36 1017 207 110 61 chr12 20347187 20347638 -123438817 + MER39 LTR ERV1 67 707 0 2672 180 104 16 chr12 20348281 20348849 -123437606 - LTR26E LTR ERV1 -4 618 1 328 259 9 28 chr12 20349367 20349475 -123436980 + MER34 LTR ERV1 25 130 -412 2243 110 7 3 chr12 20349762 20350070 -123436385 - AluSx SINE Alu -3 309 1 326 219 21 52 chr12 20350513 20350609 -123435846 + L2 LINE L2 3221 3313 0 2740 203 99 58 chr12 20350625 20351439 -123435016 + MER21B LTR ERV1 5 852 -11 216 351 121 17 chr12 20351598 20351772 -123434683 + MIR SINE MIR 71 262 0 973 231 100 31 chr12 20352078 20352219 -123434236 + MER93a LTR ERV1 61 191 -211 1841 136 70 0 chr12 20352219 20352535 -123433920 + MER44D DNA MER2_type 2 609 0 973 231 100 31 chr12 20352535 20352713 -123433742 + MER93a LTR ERV1 191 402 0 1139 175 9 33 chr12 20353108 20353319 -123433136 - AluJo SINE Alu -21 291 86 2202 85 4 0 chr12 20354555 20354871 -123431584 - AluSx SINE Alu 0 317 1 326 318 65 50 chr12 20355468 20355669 -123430786 - L2 LINE L2 -175 3097 2894 207 315 77 23 chr12 20355720 20355850 -123430605 - L2 LINE L2 -558 2756 2620 551 197 62 68 chr12 20355913 20356059 -123430396 - MLT2D LTR ERVL -40 480 237 371 164 27 9 chr12 20356059 20356169 -123430286 + (TA)n Simple_repeat Simple_repeat 2 113 0 272 151 57 0 chr12 20356171 20356224 -123430231 + MLT2D LTR ERVL 234 289 -125 243 169 0 0 chr12 20356237 20356308 -123430147 + (TA)n Simple_repeat Simple_repeat 1 71 0 226 233 82 92 chr12 20356308 20356514 -123429941 + HAL1 LINE L1 837 1040 -1467 193 222 0 56 chr12 20357022 20357076 -123429379 - L2 LINE L2 0 3313 3263 1897 125 78 33 chr12 20358670 20359029 -123427426 - THE1C LTR MaLR 0 375 1 7434 142 7 43 chr12 20359031 20360391 -123426064 - THE1C-int LTR MaLR -2 1578 269 1184 147 30 22 chr12 20360491 20360723 -123425732 + THE1C LTR MaLR 142 375 0 1520 93 0 4 chr12 20360724 20360949 -123425506 - THE1C-int LTR MaLR -1354 226 3 1908 124 93 34 chr12 20360951 20361305 -123425150 - THE1C LTR MaLR 0 375 1 2421 229 84 20 chr12 20361412 20362112 -123424343 - MER21B LTR ERV1 -107 756 12 266 316 22 104 chr12 20362929 20363075 -123423380 - L2 LINE L2 -562 2752 2636 2161 122 0 0 chr12 20363075 20363362 -123423093 + AluSg SINE Alu 5 291 -19 266 316 22 104 chr12 20363362 20363484 -123422971 - L2 LINE L2 -678 2636 2506 2039 162 68 16 chr12 20363770 20364208 -123422247 - LOR1b LTR ERV1 0 461 1 472 330 123 37 chr12 20364517 20365107 -123421348 - L2 LINE L2 0 3272 2647 390 42 0 0 chr12 20367931 20367979 -123418476 + (TG)n Simple_repeat Simple_repeat 2 49 0 798 217 42 19 chr12 20368096 20368359 -123418096 - MER69 DNA AcHobo -7 2519 2251 * 1963 246 74 50 chr12 20368357 20368601 -123417854 - MER69 DNA AcHobo -1425 1101 864 612 211 31 0 chr12 20368601 20368729 -123417726 - FLAM_A SINE Alu -1 132 1 1963 246 74 50 chr12 20368729 20369482 -123416973 - MER69 DNA AcHobo -1662 864 1 2145 132 0 6 chr12 20369598 20369909 -123416546 + AluSq SINE Alu 1 309 -4 3818 44 0 0 chr12 20370349 20370808 -123415647 - L1PA3 LINE L1 -5 6150 5692 2290 88 0 32 chr12 20370916 20371224 -123415231 + AluSx SINE Alu 1 298 -14 415 367 54 17 chr12 20371349 20371589 -123414866 - L2 LINE L2 -220 3052 2804 349 248 72 20 chr12 20371745 20371898 -123414557 + L1MC4a LINE L1 6137 6297 -1511 8419 135 36 2 chr12 20371898 20373324 -123413131 + Tigger1 DNA MER2_type 1 1475 -943 5292 85 8 30 chr12 20373328 20374129 -123412326 + L1PA11 LINE L1 5384 6166 -8 4701 133 90 27 chr12 20374144 20374835 -123411620 + Tigger1 DNA MER2_type 1465 2227 -191 2092 143 10 0 chr12 20374835 20375143 -123411312 - AluSx SINE Alu -1 311 1 4701 133 90 27 chr12 20375143 20375347 -123411108 + Tigger1 DNA MER2_type 2227 2417 -1 1303 236 73 13 chr12 20375417 20375870 -123410585 + L1MC4 LINE L1 6599 7078 -964 1252 191 0 42 chr12 20375877 20376113 -123410342 + AluJo SINE Alu 87 312 0 1941 204 60 23 chr12 20376138 20376618 -123409837 + L1MC4 LINE L1 7191 7688 -354 857 107 7 14 chr12 20376637 20376777 -123409678 - L1PA14 LINE L1 0 6161 6023 1911 203 27 47 chr12 20376787 20376839 -123409616 + L1ME LINE L1 5150 5202 -964 2191 120 0 16 chr12 20376839 20377155 -123409300 + AluSx SINE Alu 1 311 -1 1911 203 27 47 chr12 20377155 20377689 -123408766 + L1ME LINE L1 5202 5723 -443 1443 267 71 53 chr12 20377689 20377842 -123408613 + L2 LINE L2 2550 2699 -614 2992 55 3 8 chr12 20377842 20378227 -123408228 - L1PA7 LINE L1 -1 6153 5771 1443 267 71 53 chr12 20378227 20378628 -123407827 + L2 LINE L2 2699 3165 -148 2349 84 3 23 chr12 20378628 20378938 -123407517 - AluSp SINE Alu -9 304 1 1443 267 71 53 chr12 20378938 20379090 -123407365 + L2 LINE L2 3165 3313 0 1608 177 52 0 chr12 20384677 20384847 -123401608 - AluJo SINE Alu -9 303 110 180 0 0 0 chr12 20384847 20384867 -123401588 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1608 177 52 0 chr12 20384867 20384984 -123401471 - AluJo SINE Alu -202 110 1 1925 89 75 14 chr12 20385845 20386126 -123400329 - AluSq SINE Alu -15 298 1 181 189 0 57 chr12 20386412 20386465 -123399990 - MIR SINE MIR -45 217 168 2370 95 0 0 chr12 20387095 20387391 -123399064 + AluSx SINE Alu 6 301 -11 364 346 96 51 chr12 20387632 20388120 -123398335 - L2 LINE L2 -459 2855 2346 504 271 107 23 chr12 20388305 20388482 -123397973 - L2 LINE L2 -2 3311 3120 205 314 15 73 chr12 20388914 20389051 -123397404 - L2 LINE L2 -68 3245 3117 210 257 188 30 chr12 20389340 20389441 -123397014 + L2 LINE L2 3151 3267 -5 2094 107 0 17 chr12 20389594 20389892 -123396563 - AluSx SINE Alu -19 293 1 1757 153 10 43 chr12 20390876 20391176 -123395279 + AluJo SINE Alu 1 290 -22 2348 165 105 31 chr12 20391481 20392088 -123394367 - L1MA9 LINE L1 -168 6144 5493 371 258 32 8 chr12 20392206 20392330 -123394125 - L1ME4a LINE L1 -1 6120 5994 231 293 37 18 chr12 20392346 20392510 -123393945 + (TA)n Simple_repeat Simple_repeat 2 168 0 275 198 0 143 chr12 20392807 20392898 -123393557 - L1ME4a LINE L1 -538 5583 5506 388 237 101 0 chr12 20393007 20393146 -123393309 - MLT1H1 LTR MaLR -3 552 400 333 289 83 22 chr12 20393408 20393588 -123392867 + MER117 DNA MER1_type 1 191 -6 390 345 115 14 chr12 20394200 20394478 -123391977 - L1ME4a LINE L1 -89 6032 5727 310 254 71 25 chr12 20394986 20395190 -123391265 - L1ME4a LINE L1 -651 5511 5299 311 196 0 103 chr12 20395252 20395359 -123391096 - Charlie7 DNA MER1_type -6 2606 2511 431 129 69 10 chr12 20395363 20395464 -123390991 - Charlie7 DNA MER1_type -2455 157 51 192 77 0 0 chr12 20396385 20396411 -123390044 + (T)n Simple_repeat Simple_repeat 1 26 0 1848 160 3 7 chr12 20396542 20396836 -123389619 - AluJo SINE Alu -19 293 1 2322 111 0 0 chr12 20396845 20397152 -123389303 - AluSx SINE Alu -2 310 4 1361 254 62 47 chr12 20397990 20398029 -123388426 - MLT1H LTR MaLR 0 549 512 2231 86 7 10 chr12 20398029 20398332 -123388123 + AluY SINE Alu 10 311 0 1361 254 62 47 chr12 20398332 20398828 -123387627 - MLT1H LTR MaLR -37 512 6 419 349 51 20 chr12 20399239 20399434 -123387021 + L2 LINE L2 3104 3304 -9 243 343 140 19 chr12 20399605 20399920 -123386535 - L2 LINE L2 -2200 1114 762 284 343 106 16 chr12 20399924 20400178 -123386277 - L2 LINE L2 -2881 433 157 2487 70 0 0 chr12 20400664 20400965 -123385490 - AluY SINE Alu -10 301 1 301 308 47 0 chr12 20401657 20401764 -123384691 - L1ME4a LINE L1 -891 5255 5144 836 264 37 77 chr12 20401945 20402244 -123384211 - L1ME4a LINE L1 -2097 4049 3775 1438 179 20 13 chr12 20402244 20402546 -123383909 - L1MC1 LINE L1 -15 6318 6015 836 264 37 77 chr12 20402546 20402728 -123383727 - L1ME4a LINE L1 -2371 3775 3587 516 286 100 76 chr12 20402739 20403109 -123383346 - L1ME4a LINE L1 -3575 2571 2193 189 121 0 0 chr12 20404992 20405025 -123381430 + (T)n Simple_repeat Simple_repeat 1 33 0 1682 122 17 54 chr12 20405568 20405864 -123380591 + AluSx SINE Alu 7 291 -21 339 25 0 0 chr12 20405893 20405933 -123380522 + (CA)n Simple_repeat Simple_repeat 2 41 0 201 344 62 31 chr12 20406073 20406169 -123380286 - L2 LINE L2 -23 3249 3151 206 256 12 49 chr12 20406374 20406456 -123379999 - MIR SINE MIR -14 248 170 2228 75 0 4 chr12 20406891 20407169 -123379286 + AluY SINE Alu 16 292 -19 305 231 308 14 chr12 20409244 20409465 -123376990 - L1ME4a LINE L1 -2 6119 5834 23 0 0 0 chr12 20409614 20409637 -123376818 + AT_rich Low_complexity Low_complexity 1 23 0 242 146 0 73 chr12 20410370 20410425 -123376030 + MER5B DNA MER1_type 128 178 0 1020 177 35 0 chr12 20410768 20410971 -123375484 - Charlie4 DNA MER1_type -1735 226 17 209 229 49 33 chr12 20411193 20411254 -123375201 - MIR SINE MIR -10 252 191 255 320 41 25 chr12 20411499 20411621 -123374834 + MIR SINE MIR 86 209 -53 419 278 58 68 chr12 20411771 20411976 -123374479 - MIR SINE MIR -3 259 57 851 114 0 0 chr12 20461977 20462100 -123324355 - L1P5 LINE L1 -496 5660 5538 313 329 92 38 chr12 20462511 20462751 -123323704 - MIR SINE MIR -3 259 7 1994 123 3 23 chr12 20462925 20463234 -123323221 + AluJb SINE Alu 4 306 -6 200 176 20 20 chr12 20463293 20463344 -123323111 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 259 26 17 chr12 20463345 20463461 -123322994 - L1ME4a LINE L1 -1942 5866 5750 264 59 0 0 chr12 20464332 20464366 -123322089 + (T)n Simple_repeat Simple_repeat 1 34 0 199 328 80 42 chr12 20464555 20464817 -123321638 + L2 LINE L2 1834 2105 -1209 416 306 261 13 chr12 20464880 20465187 -123321268 + L2 LINE L2 2904 3286 -27 513 0 0 0 chr12 20465214 20465271 -123321184 + (TG)n Simple_repeat Simple_repeat 2 58 0 1051 276 140 52 chr12 20465418 20466195 -123320260 + L2 LINE L2 2450 3311 -2 21 0 0 0 chr12 20466404 20466425 -123320030 + AT_rich Low_complexity Low_complexity 1 21 0 2509 123 63 19 chr12 20467346 20467819 -123318636 + L1MA4A LINE L1 5808 6301 -2 3115 212 62 26 chr12 20468255 20469517 -123316938 + L1MB7 LINE L1 4857 6171 -13 342 317 85 18 chr12 20469732 20469896 -123316559 + MIR SINE MIR 48 222 -40 307 155 35 0 chr12 20470190 20470248 -123316207 + L1MC1 LINE L1 6110 6169 -164 196 291 13 25 chr12 20474307 20474386 -123312069 + MIR SINE MIR 21 98 -110 238 280 0 0 chr12 20475609 20475659 -123310796 + L2 LINE L2 3210 3259 -13 2192 91 10 7 chr12 20475662 20475958 -123310497 + AluSq SINE Alu 1 297 -16 277 328 147 17 chr12 20476280 20476396 -123310059 + 7SLRNA srpRNA srpRNA 25 155 -165 8065 134 20 2 chr12 20476520 20477795 -123308660 + HSMAR2 DNA Mariner 2 1300 -2 23 68 0 0 chr12 20478622 20478666 -123307789 + AT_rich Low_complexity Low_complexity 1 44 0 959 208 153 64 chr12 20478750 20479169 -123307286 + MLT1D LTR MaLR 7 462 -43 1553 131 15 12 chr12 20479174 20479622 -123306833 - LTR54 LTR ERV1 0 510 2 311 154 0 0 chr12 20479629 20479681 -123306774 - MLT1D LTR MaLR 0 505 454 582 140 0 11 chr12 20479735 20479828 -123306627 + AluSg/x SINE Alu 191 282 -27 1464 135 9 0 chr12 20479937 20480152 -123306303 + AluSq SINE Alu 1 217 -96 195 69 0 0 chr12 20480359 20480388 -123306067 + (T)n Simple_repeat Simple_repeat 1 29 0 227 292 92 15 chr12 20480409 20480474 -123305981 - MIR SINE MIR -185 77 8 207 344 0 0 chr12 20480768 20480829 -123305626 - L2 LINE L2 -227 3045 2985 188 339 91 8 chr12 20482225 20482346 -123304109 - L2 LINE L2 -1965 1349 1219 2340 85 3 0 chr12 20482432 20482725 -123303730 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr12 20482829 20482859 -123303596 + AT_rich Low_complexity Low_complexity 1 30 0 2291 107 0 0 chr12 20483917 20484215 -123302240 + AluSx SINE Alu 1 298 -14 222 228 0 152 chr12 20484713 20484792 -123301663 - L2 LINE L2 -1 3312 3246 199 318 71 19 chr12 20485211 20485365 -123301090 - L2 LINE L2 -1341 1973 1812 460 177 150 9 chr12 20485450 20485563 -123300892 - MLT1F1 LTR MaLR -6 561 433 233 167 0 0 chr12 20485560 20485596 -123300859 - MLT1F LTR MaLR -506 36 1 * 203 120 0 20 chr12 20486430 20486480 -123299975 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 459 0 0 0 chr12 20486481 20486537 -123299918 - L1HS LINE L1 -2 6153 6098 1151 192 0 63 chr12 20486569 20486824 -123299631 - MER8 DNA MER2_type 0 239 1 2176 116 0 10 chr12 20487461 20487762 -123298693 + AluSq SINE Alu 1 298 -15 198 294 63 32 chr12 20488207 20488333 -123298122 + MIR SINE MIR 79 208 -54 1604 104 0 0 chr12 20488705 20488917 -123297538 + AluSg/x SINE Alu 98 309 -3 569 174 0 0 chr12 20489851 20489943 -123296512 - AluJ/FLAM SINE Alu -220 92 1 280 261 55 20 chr12 20489946 20490188 -123296267 + L1P LINE L1 5054 5300 -846 2037 130 10 0 chr12 20490191 20490498 -123295957 + AluSx SINE Alu 1 310 -2 216 0 0 0 chr12 20491799 20491823 -123294632 + (T)n Simple_repeat Simple_repeat 1 24 0 2073 134 3 6 chr12 20492126 20492439 -123294016 - AluSx SINE Alu 0 312 1 2119 125 6 0 chr12 20492949 20493260 -123293195 - AluSq SINE Alu 0 313 1 849 194 68 10 chr12 20493424 20493630 -123292825 + MER20 DNA MER1_type 2 219 0 614 223 0 0 chr12 20493740 20493852 -123292603 + MIR SINE MIR 11 122 -140 236 254 15 0 chr12 20493899 20493966 -123292489 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 2339 160 26 33 chr12 20493966 20494385 -123292070 + MER44D DNA MER2_type 1 471 -134 684 205 0 0 chr12 20494395 20494512 -123291943 - FLAM_C SINE Alu -16 117 1 228 59 0 0 chr12 20494513 20494547 -123291908 + MER44D DNA MER2_type 458 491 -114 300 183 0 56 chr12 20494548 20494619 -123291836 - L2 LINE L2 -71 3242 3176 1184 150 25 93 chr12 20494804 20495084 -123291371 - Tigger3(Golem) DNA MER2_type -7 3022 2762 1613 145 4 0 chr12 20495085 20495327 -123291128 + AluSx SINE Alu 21 263 -49 746 232 0 0 chr12 20495351 20495493 -123290962 - AluJb SINE Alu -42 270 129 820 124 18 0 chr12 20495498 20495611 -123290844 + FRAM SINE Alu 32 146 -30 38 22 0 0 chr12 20495625 20495670 -123290785 + AT_rich Low_complexity Low_complexity 1 45 0 1899 83 40 0 chr12 20496927 20497180 -123289275 - AluSx SINE Alu -14 298 36 32 0 0 0 chr12 20498574 20498606 -123287849 + AT_rich Low_complexity Low_complexity 1 32 0 298 284 46 9 chr12 20499246 20499355 -123287100 - MIR SINE MIR -77 185 73 2020 120 0 7 chr12 20500120 20500432 -123286023 + AluSx SINE Alu 1 310 0 2046 133 3 22 chr12 20500873 20501188 -123285267 - AluSx SINE Alu -3 309 1 1602 178 22 0 chr12 20501910 20502015 -123284440 + AluJo SINE Alu 21 122 -190 242 28 0 28 chr12 20502015 20502051 -123284404 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1602 178 22 0 chr12 20502051 20502221 -123284234 + AluJo SINE Alu 122 302 -10 189 0 0 0 chr12 20503842 20503863 -123282592 + (T)n Simple_repeat Simple_repeat 1 21 0 282 239 87 0 chr12 20506105 20506197 -123280258 - HAL1b LINE L1 0 1348 1249 704 257 122 14 chr12 20506218 20506440 -123280015 - MIR SINE MIR -14 248 3 332 278 135 53 chr12 20506640 20506921 -123279534 - L1ME LINE L1 -439 5682 5379 776 303 16 12 chr12 20506939 20507190 -123279265 + MIR SINE MIR 2 253 -9 222 287 79 114 chr12 20508263 20508465 -123277990 - L2 LINE L2 -63 3209 3015 219 254 16 0 chr12 20508980 20509043 -123277412 + L2 LINE L2 1932 1995 -1319 305 280 13 0 chr12 20510234 20510309 -123276146 + L2 LINE L2 2986 3061 -252 23 54 0 0 chr12 20510817 20510854 -123275601 + AT_rich Low_complexity Low_complexity 1 37 0 347 227 18 64 chr12 20510967 20511077 -123275378 + L1MC4 LINE L1 6599 6703 -1339 7056 117 135 102 chr12 20511688 20513332 -123273123 + pTR5 LTR ERV1 741 2438 0 485 234 167 31 chr12 20513924 20514116 -123272339 + MIR SINE MIR 26 243 -19 314 318 110 13 chr12 20514808 20514962 -123271493 + MLT1J LTR MaLR 1 169 -342 259 195 61 49 chr12 20515096 20515178 -123271277 + MLT1J LTR MaLR 377 459 -52 314 234 46 138 chr12 20515194 20515412 -123271043 - MLT1L LTR MaLR -417 198 1 2418 139 31 7 chr12 20516046 20516471 -123269984 + L1MB5 LINE L1 5536 5970 -204 538 198 0 33 chr12 20516475 20516596 -123269859 + L1MB5 LINE L1 6057 6173 -1 630 201 119 0 chr12 20517318 20517452 -123269003 - FAM SINE Alu -35 150 1 198 0 0 0 chr12 20517915 20517937 -123268518 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 239 281 0 18 chr12 20518704 20518761 -123267694 + MER113 DNA MER1_type? 464 519 -2 348 245 32 21 chr12 20518995 20519089 -123267366 + HsTC2 DNA Tc2 50 144 -1754 296 266 199 6 chr12 20519102 20519259 -123267196 + HsTC2 DNA Tc2 1295 1481 -417 180 77 0 0 chr12 20519288 20519314 -123267141 + (A)n Simple_repeat Simple_repeat 1 26 0 288 211 0 0 chr12 20520126 20520202 -123266253 + (TA)n Simple_repeat Simple_repeat 1 76 0 743 131 0 77 chr12 20520202 20520332 -123266123 - FLAM_A SINE Alu -13 120 1 844 118 99 0 chr12 20520345 20520497 -123265958 - L1MC3 LINE L1 -169 7616 7450 5065 170 56 7 chr12 20520509 20521513 -123264942 - L1MC3 LINE L1 -746 5400 5281 856 139 16 0 chr12 20522811 20522940 -123263515 - AluSq/x SINE Alu -181 131 1 2176 116 0 10 chr12 20523100 20523401 -123263054 + AluSq SINE Alu 1 298 -15 212 333 48 16 chr12 20523846 20523972 -123262483 + MIR SINE MIR 79 208 -54 1885 148 0 10 chr12 20524104 20524394 -123262061 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 20525110 20525147 -123261308 + AT_rich Low_complexity Low_complexity 1 37 0 208 250 0 0 chr12 20525414 20525470 -123260985 + A-rich Low_complexity Low_complexity 1 56 0 522 290 20 20 chr12 20525631 20525871 -123260584 + L1MC/D LINE L1 5286 5524 -707 215 245 0 0 chr12 20527586 20527639 -123258816 + T-rich Low_complexity Low_complexity 1 53 0 2045 133 3 16 chr12 20528112 20528428 -123258027 - AluSx SINE Alu 0 312 1 1946 118 3 43 chr12 20528638 20528943 -123257512 + AluJo SINE Alu 1 293 -19 1943 153 7 0 chr12 20529033 20529328 -123257127 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 20529346 20529369 -123257086 + AT_rich Low_complexity Low_complexity 1 23 0 207 100 0 0 chr12 20529519 20529549 -123256906 + (T)n Simple_repeat Simple_repeat 1 30 0 2108 102 3 14 chr12 20530139 20530432 -123256023 + AluSq SINE Alu 1 290 -23 180 0 0 0 chr12 20530435 20530455 -123256000 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2236 94 0 17 chr12 20531787 20532103 -123254352 - AluSx SINE Alu 0 311 1 879 181 114 5 chr12 20532261 20532454 -123254001 + L1PA16 LINE L1 5951 6164 -2 26 82 0 0 chr12 20532648 20532709 -123253746 + AT_rich Low_complexity Low_complexity 1 61 0 623 323 48 36 chr12 20532724 20532975 -123253480 - MIR SINE MIR -1 261 8 202 232 188 14 chr12 20533108 20533177 -123253278 - MIR SINE MIR -39 169 88 598 260 46 40 chr12 20533278 20533451 -123253004 - LTR16A LTR ERVL -14 436 263 190 200 25 0 chr12 20533451 20533491 -123252964 - L2 LINE L2 -5 3267 3227 642 266 92 14 chr12 20533660 20533867 -123252588 - MIR SINE MIR -1 261 39 354 335 65 41 chr12 20534774 20535019 -123251436 - L2 LINE L2 -98 3215 2965 25 0 0 0 chr12 20535513 20535538 -123250917 + AT_rich Low_complexity Low_complexity 1 25 0 417 240 41 16 chr12 20535538 20535659 -123250796 + L1MC4 LINE L1 7784 7907 -135 1380 158 116 0 chr12 20535764 20535866 -123250589 + AluJb SINE Alu 3 92 -220 240 59 0 0 chr12 20535866 20535900 -123250555 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1380 158 116 0 chr12 20535900 20536056 -123250399 + AluJb SINE Alu 92 291 -21 1748 174 0 0 chr12 20536069 20536344 -123250111 + AluSx SINE Alu 5 279 -33 25 0 0 0 chr12 20536344 20536369 -123250086 + AT_rich Low_complexity Low_complexity 1 25 0 2014 123 0 7 chr12 20536939 20537223 -123249232 + AluSx SINE Alu 1 282 -30 2325 82 14 0 chr12 20537245 20537536 -123248919 + AluSp SINE Alu 1 295 -18 2341 102 3 0 chr12 20538671 20538974 -123247481 + AluSx SINE Alu 3 306 -6 25 0 0 0 chr12 20539072 20539097 -123247358 + AT_rich Low_complexity Low_complexity 1 25 0 1846 157 31 0 chr12 20540792 20541085 -123245370 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 20541146 20541167 -123245288 + AT_rich Low_complexity Low_complexity 1 21 0 1587 193 7 7 chr12 20542020 20542343 -123244112 + AluJo SINE Alu 1 323 0 1914 141 3 10 chr12 20542468 20542772 -123243683 - AluSx SINE Alu -10 302 1 443 304 24 12 chr12 20543390 20543558 -123242897 - MIR SINE MIR -65 197 28 1563 193 7 14 chr12 20545046 20545342 -123241113 + AluJo SINE Alu 1 294 -18 232 353 146 27 chr12 20545396 20545657 -123240798 - L2 LINE L2 -17 3296 3005 1798 136 0 0 chr12 20545973 20546231 -123240224 + AluSx SINE Alu 2 259 -53 226 319 33 11 chr12 20546240 20546331 -123240124 - L2 LINE L2 -839 2475 2383 700 56 56 0 chr12 20546353 20546460 -123239995 + L1MA8 LINE L1 6169 6281 -10 299 300 27 2 chr12 20546481 20546630 -123239825 + L1P5 LINE L1 5389 5549 -602 27 0 0 0 chr12 20547702 20547729 -123238726 + AT_rich Low_complexity Low_complexity 1 27 0 337 262 154 20 chr12 20548425 20548574 -123237881 + L3 LINE CR1 1064 1232 -345 2083 110 11 0 chr12 20548955 20549237 -123237218 + AluSx SINE Alu 12 296 -16 180 465 30 10 chr12 20549322 20549423 -123237032 - MIR3 SINE MIR -104 104 2 997 113 0 13 chr12 20549600 20549751 -123236704 - AluSg/x SINE Alu 0 312 164 588 129 148 0 chr12 20549874 20549975 -123236480 - FLAM_C SINE Alu -27 116 1 2009 118 70 0 chr12 20550363 20550650 -123235805 - AluSx SINE Alu -5 307 1 972 173 60 0 chr12 20550714 20550882 -123235573 + AluJb SINE Alu 121 298 -14 1810 145 28 3 chr12 20550940 20551230 -123235225 + AluSq SINE Alu 1 297 -16 2155 74 3 3 chr12 20551404 20551720 -123234735 - AluY SINE Alu 0 316 1 22 35 0 0 chr12 20552289 20552318 -123234137 + AT_rich Low_complexity Low_complexity 1 29 0 1308 104 0 6 chr12 20552552 20552812 -123233643 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 20552894 20552917 -123233538 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 20553510 20553537 -123232918 + AT_rich Low_complexity Low_complexity 1 27 0 2075 127 0 0 chr12 20553693 20554007 -123232448 - AluSx SINE Alu 0 314 1 455 305 86 0 chr12 20554426 20554577 -123231878 + FAM SINE Alu 2 165 -10 5031 191 89 13 chr12 20555110 20556261 -123230194 + Charlie1a DNA MER1_type 1 1239 -216 293 137 0 39 chr12 20556244 20556295 -123230160 + Charlie1a DNA MER1_type 1406 1454 -1 * 2168 120 7 0 chr12 20556323 20556624 -123229831 + AluSx SINE Alu 1 303 -9 1964 123 3 20 chr12 20556648 20556941 -123229514 - AluSx SINE Alu -24 288 1 2495 79 3 0 chr12 20557434 20557739 -123228716 + AluSx SINE Alu 1 306 -6 1882 104 48 11 chr12 20559548 20559866 -123226589 - AluSg SINE Alu 0 330 3 22 35 0 0 chr12 20560844 20560873 -123225582 + AT_rich Low_complexity Low_complexity 1 29 0 1983 141 0 7 chr12 20561761 20562066 -123224389 + AluSx SINE Alu 1 303 -9 202 182 0 0 chr12 20562066 20562099 -123224356 + polypurine Low_complexity Low_complexity 1 33 0 2215 122 0 0 chr12 20562294 20562589 -123223866 + AluSx SINE Alu 1 295 -17 24 53 0 0 chr12 20562615 20562653 -123223802 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 20562955 20562978 -123223477 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr12 20563871 20563926 -123222529 + AT_rich Low_complexity Low_complexity 1 55 0 2145 109 0 26 chr12 20565588 20565892 -123220563 + AluSx SINE Alu 1 296 -16 2102 124 3 3 chr12 20565903 20566201 -123220254 + AluSx SINE Alu 1 298 -14 2815 13 0 0 chr12 20566979 20567289 -123219166 + AluYb8 SINE Alu 1 310 -8 26 0 0 0 chr12 20567382 20567408 -123219047 + AT_rich Low_complexity Low_complexity 1 26 0 2032 101 28 3 chr12 20567562 20567848 -123218607 + AluSx SINE Alu 1 293 -19 192 97 0 0 chr12 20568037 20568068 -123218387 + (T)n Simple_repeat Simple_repeat 1 31 0 1572 73 0 0 chr12 20568116 20568307 -123218148 - AluSq SINE Alu -122 191 1 27 0 0 0 chr12 20568356 20568383 -123218072 + AT_rich Low_complexity Low_complexity 1 27 0 280 295 83 26 chr12 20569229 20569385 -123217070 + MIR SINE MIR 86 250 -12 22 56 0 0 chr12 20570043 20570079 -123216376 + AT_rich Low_complexity Low_complexity 1 36 0 2193 86 3 51 chr12 20570491 20570804 -123215651 + AluSp SINE Alu 1 298 -15 1876 130 0 4 chr12 20572066 20572335 -123214120 - AluSx SINE Alu -44 268 1 701 180 180 0 chr12 20572361 20572533 -123213922 - MER3 DNA MER1_type -6 203 1 2083 115 0 0 chr12 20572548 20572826 -123213629 - AluSx SINE Alu 0 312 35 1850 158 3 7 chr12 20573121 20573413 -123213042 + 7SLRNA srpRNA srpRNA 5 295 -25 1904 126 48 3 chr12 20573454 20573747 -123212708 - AluJb SINE Alu -6 306 1 1714 100 71 0 chr12 20573778 20574018 -123212437 + AluSq SINE Alu 1 257 -56 744 154 0 0 chr12 20574451 20574568 -123211887 + AluJb SINE Alu 1 117 -195 2208 103 7 0 chr12 20574919 20575209 -123211246 + AluSg SINE Alu 5 296 -14 2152 116 0 13 chr12 20575209 20575520 -123210935 + AluSp SINE Alu 1 307 -6 1314 106 0 6 chr12 20575545 20575724 -123210731 + AluSg/x SINE Alu 112 289 -21 214 234 0 0 chr12 20576226 20576273 -123210182 + (CGG)n Simple_repeat Simple_repeat 3 49 0 1996 130 3 3 chr12 20576826 20577118 -123209337 + AluSq SINE Alu 1 292 -21 201 276 0 41 chr12 20577562 20577660 -123208795 + A-rich Low_complexity Low_complexity 2 95 0 2097 120 0 46 chr12 20578400 20578725 -123207730 + AluSx SINE Alu 1 310 -2 2138 80 38 3 chr12 20579111 20579400 -123207055 + AluSx SINE Alu 3 301 -11 2254 107 0 0 chr12 20579977 20580267 -123206188 + AluSx SINE Alu 14 303 -9 836 157 64 7 chr12 20580271 20580411 -123206044 + AluJo SINE Alu 1 148 -164 11933 127 42 7 chr12 20580426 20580788 -123205667 - Tigger1 DNA MER2_type -82 2336 1988 1582 165 25 59 chr12 20580788 20581109 -123205346 + AluJo SINE Alu 1 310 -2 11933 127 42 7 chr12 20581109 20582772 -123203683 - Tigger1 DNA MER2_type -430 1988 242 1502 143 5 5 chr12 20582772 20582996 -123203459 + AluJo SINE Alu 44 267 -45 21 0 0 0 chr12 20583074 20583095 -123203360 + AT_rich Low_complexity Low_complexity 1 21 0 307 229 95 24 chr12 20583096 20583227 -123203228 + L1ME2 LINE L1 5992 6134 -28 26 0 0 0 chr12 20583498 20583524 -123202931 + AT_rich Low_complexity Low_complexity 1 26 0 1457 176 70 33 chr12 20586723 20586995 -123199460 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr12 20587560 20587583 -123198872 + (T)n Simple_repeat Simple_repeat 1 23 0 2166 110 14 0 chr12 20588279 20588571 -123197884 + AluSx SINE Alu 1 296 -16 25 75 0 32 chr12 20590081 20590174 -123196281 + AT_rich Low_complexity Low_complexity 1 90 0 1957 153 3 0 chr12 20590523 20590818 -123195637 + AluSx SINE Alu 1 296 -16 1920 138 9 34 chr12 20590990 20591310 -123195145 - AluSx SINE Alu 0 312 1 1544 174 17 51 chr12 20592508 20592801 -123193654 - AluJo SINE Alu -29 283 1 1803 129 76 0 chr12 20592881 20593144 -123193311 + AluSq SINE Alu 3 285 -28 2290 112 7 0 chr12 20593174 20593479 -123192976 + AluSx SINE Alu 1 307 -5 280 301 14 0 chr12 20594100 20594173 -123192282 - MIR SINE MIR -96 112 39 1693 177 32 0 chr12 20594749 20595031 -123191424 + AluJo SINE Alu 2 292 -20 2346 82 0 0 chr12 20595046 20595339 -123191116 + AluSg SINE Alu 1 293 -17 2181 92 7 0 chr12 20595368 20595702 -123190753 + AluSp SINE Alu 4 339 0 199 352 0 0 chr12 20595919 20595973 -123190482 + L2 LINE L2 3211 3264 -8 5221 123 43 18 chr12 20596210 20597270 -123189185 - L1PA16 LINE L1 0 6166 5108 2155 147 0 0 chr12 20597270 20597582 -123188873 - AluSx SINE Alu 0 312 1 7697 200 29 4 chr12 20597591 20598196 -123188259 - L1 LINE L1 -1114 5032 4443 360 0 0 0 chr12 20598196 20598236 -123188219 + (TG)n Simple_repeat Simple_repeat 2 41 0 7697 200 29 4 chr12 20598236 20599429 -123187026 - L1 LINE L1 -1703 4443 3190 1262 169 147 52 chr12 20599437 20599709 -123186746 + AluJb SINE Alu 6 303 -9 25 0 0 0 chr12 20600208 20600233 -123186222 + AT_rich Low_complexity Low_complexity 1 25 0 830 142 0 8 chr12 20601015 20601142 -123185313 - FLAM_C SINE Alu -7 126 1 1339 212 26 11 chr12 20601378 20601647 -123184808 + AluJb SINE Alu 1 273 -39 1639 158 91 0 chr12 20601654 20601919 -123184536 + AluJo SINE Alu 1 289 -23 753 174 0 56 chr12 20602102 20602263 -123184192 - FAM SINE Alu -2 47 1 261 157 182 91 chr12 20602274 20602319 -123184136 - L1ME3A LINE L1 -198 5972 5932 1669 167 51 0 chr12 20602319 20602594 -123183861 - AluJb SINE Alu -23 289 1 261 157 182 91 chr12 20602594 20602669 -123183786 - L1ME3A LINE L1 -238 5932 5841 1997 82 0 0 chr12 20602690 20602935 -123183520 + AluSp SINE Alu 50 294 -19 1854 128 0 44 chr12 20602935 20603233 -123183222 + AluSc SINE Alu 1 285 -24 2207 116 0 7 chr12 20603244 20603547 -123182908 - AluSg SINE Alu -9 301 1 722 155 0 165 chr12 20604339 20604468 -123181987 + AluJb SINE Alu 3 89 -223 360 0 0 0 chr12 20604468 20604508 -123181947 + (TA)n Simple_repeat Simple_repeat 2 41 0 722 155 0 165 chr12 20604508 20604578 -123181877 + AluJb SINE Alu 89 169 -143 180 0 0 0 chr12 20604622 20604642 -123181813 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 136 13 13 chr12 20604662 20604971 -123181484 - AluJo SINE Alu -3 309 1 1752 123 3 58 chr12 20605040 20605333 -123181122 - AluSg SINE Alu 0 310 34 1528 166 0 0 chr12 20605334 20605569 -123180886 - AluSx SINE Alu -76 236 2 296 296 120 32 chr12 20606337 20606462 -123179993 - L3 LINE CR1 -81 1496 1361 1420 64 0 0 chr12 20606615 20606786 -123179669 - AluSp SINE Alu -2 311 141 242 211 44 111 chr12 20606871 20606909 -123179546 + MIR SINE MIR 120 159 -103 2310 109 13 0 chr12 20606909 20607212 -123179243 + AluSx SINE Alu 1 307 -5 242 211 44 111 chr12 20607212 20607263 -123179192 + MIR SINE MIR 159 203 -59 408 59 15 73 chr12 20607378 20607446 -123179009 + AluSp SINE Alu 76 139 -174 1730 100 12 0 chr12 20607447 20607687 -123178768 + AluSq SINE Alu 58 300 -13 431 233 47 47 chr12 20607716 20607845 -123178610 + MER3 DNA MER1_type 38 166 -43 736 182 29 112 chr12 20607850 20607976 -123178479 - AluJo/FRAM SINE Alu -21 291 181 1808 138 46 3 chr12 20607976 20608258 -123178197 + AluSx SINE Alu 1 294 -18 736 182 29 112 chr12 20608258 20608301 -123178154 - AluJo/FRAM SINE Alu -131 181 136 294 130 22 0 chr12 20608303 20608349 -123178106 + MER3 DNA MER1_type 157 203 -6 1006 133 7 0 chr12 20608393 20608543 -123177912 + AluSg/x SINE Alu 154 304 -8 231 91 61 0 chr12 20608607 20608640 -123177815 - MER58 DNA MER1_type -1 2419 2385 2266 110 0 16 chr12 20608661 20608979 -123177476 - AluSq SINE Alu 0 313 1 363 289 69 47 chr12 20609128 20609360 -123177095 + L1 LINE L1 4488 4724 -1422 475 261 62 12 chr12 20609387 20609548 -123176907 + MIR SINE MIR 89 257 -5 275 147 200 0 chr12 20609563 20609638 -123176817 + L1 LINE L1 4736 4825 -1321 5436 30 9 20 chr12 20609963 20610602 -123175853 + SVA Other Other 755 1386 0 1877 160 3 19 chr12 20610626 20610938 -123175517 + AluSx SINE Alu 1 307 -5 232 282 35 12 chr12 20610940 20611025 -123175430 + L1ME LINE L1 5390 5476 -645 1750 180 3 3 chr12 20611371 20611666 -123174789 - AluJb SINE Alu -17 295 1 1933 101 4 0 chr12 20612008 20612256 -123174199 + AluSx SINE Alu 1 249 -63 1025 136 51 11 chr12 20612256 20612433 -123174022 + AluSg/x SINE Alu 122 305 -7 24 0 0 0 chr12 20612872 20612896 -123173559 + AT_rich Low_complexity Low_complexity 1 24 0 1664 129 39 126 chr12 20613112 20613404 -123173051 - MER7A DNA MER2_type -2692 346 95 2096 125 10 0 chr12 20613404 20613700 -123172755 + AluSx SINE Alu 1 299 -13 1664 129 39 126 chr12 20613700 20613788 -123172667 - MER7A DNA MER2_type -2943 95 1 430 290 88 59 chr12 20614017 20614358 -123172097 - L1ME4a LINE L1 -269 5852 5502 1701 115 59 48 chr12 20614460 20614730 -123171725 + AluSx SINE Alu 1 273 -39 215 91 0 23 chr12 20614740 20614751 -123171704 + (TAAAAA)n Simple_repeat Simple_repeat 4 14 -32 2388 97 0 0 chr12 20614751 20615061 -123171394 + AluSx SINE Alu 1 310 -2 215 91 0 23 chr12 20615061 20615093 -123171362 + (TAAAAA)n Simple_repeat Simple_repeat 14 46 0 2109 118 10 3 chr12 20615115 20615411 -123171044 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr12 20615602 20615632 -123170823 + AT_rich Low_complexity Low_complexity 1 30 0 1576 131 71 19 chr12 20615991 20616259 -123170196 + AluJo SINE Alu 1 282 -30 38 0 0 0 chr12 20617001 20617039 -123169416 + AT_rich Low_complexity Low_complexity 1 38 0 2234 122 3 0 chr12 20617512 20617816 -123168639 - AluSx SINE Alu -7 305 1 184 151 38 75 chr12 20617969 20618022 -123168433 + MER5C DNA MER1_type 90 140 -184 432 262 90 0 chr12 20618257 20618402 -123168053 - MER46C DNA MER2_type -8 330 173 1221 117 6 6 chr12 20618431 20618611 -123167844 + AluSg/x SINE Alu 119 298 -14 1463 212 19 19 chr12 20618686 20619047 -123167408 - AluJb SINE Alu 0 312 3 573 92 0 0 chr12 20619259 20619335 -123167120 + AluSx SINE Alu 2 77 -236 231 36 0 0 chr12 20619337 20619365 -123167090 + (CAA)n Simple_repeat Simple_repeat 1 28 0 441 58 0 0 chr12 20619411 20619463 -123166992 + AluSx SINE Alu 82 133 -177 2087 123 0 3 chr12 20619464 20619756 -123166699 + AluSg SINE Alu 1 291 -19 240 249 269 20 chr12 20619824 20620021 -123166434 + L1MC4 LINE L1 7706 7951 -91 2042 104 26 23 chr12 20620118 20620427 -123166028 + AluSg SINE Alu 1 310 0 1778 132 86 4 chr12 20620589 20620869 -123165586 - AluJb SINE Alu -9 303 1 809 161 0 0 chr12 20620888 20621006 -123165449 + FLAM_C SINE Alu 1 118 -25 342 197 15 15 chr12 20621213 20621279 -123165176 + AluJb SINE Alu 213 278 -24 2082 102 3 14 chr12 20621463 20621748 -123164707 + AluSp SINE Alu 23 304 -9 1815 166 10 13 chr12 20621752 20622053 -123164402 + AluJb SINE Alu 1 300 -12 827 129 38 30 chr12 20622234 20622366 -123164089 - FLAM_C SINE Alu 0 133 1 1519 157 43 47 chr12 20622426 20622725 -123163730 - AluJb SINE Alu 0 312 15 2049 126 3 10 chr12 20622788 20623108 -123163347 - AluSx SINE Alu 0 312 1 2224 88 10 3 chr12 20623114 20623410 -123163045 - AluSp SINE Alu -15 298 1 2689 26 0 7 chr12 20623792 20624100 -123162355 - AluY SINE Alu -1 310 5 2417 68 0 7 chr12 20624137 20624433 -123162022 - AluY SINE Alu -17 294 1 1221 166 0 39 chr12 20624997 20625226 -123161229 - AluJo SINE Alu -8 304 85 2131 128 0 13 chr12 20625530 20625835 -123160620 + AluSx SINE Alu 1 301 -11 1668 182 19 16 chr12 20625884 20626192 -123160263 + AluJo SINE Alu 1 309 -3 619 159 37 9 chr12 20626198 20626305 -123160150 - Tigger2 DNA MER2_type -228 2490 2381 2304 89 20 0 chr12 20626308 20626610 -123159845 - AluSg SINE Alu -2 308 1 1971 129 41 7 chr12 20626903 20627197 -123159258 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 20627270 20627299 -123159156 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1755 134 0 39 chr12 20627307 20627591 -123158864 - AluJb SINE Alu -39 273 1 2464 58 0 22 chr12 20629332 20629644 -123156811 + AluY SINE Alu 1 305 -6 1271 149 50 14 chr12 20629700 20629921 -123156534 + AluJb SINE Alu 1 229 -83 1642 171 10 20 chr12 20629978 20630270 -123156185 + AluJo SINE Alu 4 292 -20 23 33 0 0 chr12 20630295 20630325 -123156130 + AT_rich Low_complexity Low_complexity 1 30 0 2063 105 11 21 chr12 20632398 20632683 -123153772 - AluSx SINE Alu -30 282 1 22 70 0 0 chr12 20633044 20633087 -123153368 + AT_rich Low_complexity Low_complexity 1 43 0 535 195 26 45 chr12 20633640 20633794 -123152661 - AluSg/x SINE Alu 0 312 162 2424 78 0 3 chr12 20634509 20634815 -123151640 + AluY SINE Alu 1 305 -6 515 329 0 22 chr12 20635264 20635401 -123151054 + MIR3 SINE MIR 11 144 -64 1610 249 133 53 chr12 20636354 20636515 -123149940 + L1M4c LINE L1 892 1039 -5345 2064 133 0 7 chr12 20636515 20636809 -123149646 - AluJo SINE Alu -18 294 3 1610 249 133 53 chr12 20636809 20637503 -123148952 + L1M4c LINE L1 1039 1816 -4568 477 219 123 0 chr12 20637619 20637733 -123148722 - MER58A DNA MER1_type 0 128 1 466 319 156 27 chr12 20637768 20638173 -123148282 - L3 LINE CR1 -477 1100 644 613 133 0 51 chr12 20638223 20638321 -123148134 + AluJ/FLAM SINE Alu 3 95 -217 1901 100 65 7 chr12 20638330 20638620 -123147835 - AluSx SINE Alu -1 311 5 1902 136 40 31 chr12 20638622 20638945 -123147510 - THE1B LTR MaLR -38 326 1 757 271 78 18 chr12 20639041 20639322 -123147133 + MLT1C LTR MaLR 168 465 -2 188 278 175 0 chr12 20639340 20639437 -123147018 - L2 LINE L2 -209 3104 2991 706 144 117 0 chr12 20640145 20640256 -123146199 + FLAM_A SINE Alu 4 127 -6 524 157 8 104 chr12 20640552 20640686 -123145769 + L2 LINE L2 3191 3311 -2 21 0 0 0 chr12 20640762 20640783 -123145672 + AT_rich Low_complexity Low_complexity 1 21 0 189 279 22 0 chr12 20641011 20641078 -123145377 - MIR SINE MIR -102 106 38 1898 152 14 0 chr12 20642352 20642648 -123143807 - AluJo SINE Alu -8 304 5 1592 156 17 21 chr12 20643411 20643699 -123142756 - MER1B DNA MER1_type -18 321 35 844 181 110 16 chr12 20643714 20643896 -123142559 - MER7A DNA MER2_type -149 197 1 193 354 0 0 chr12 20643906 20643954 -123142501 + L2 LINE L2 3210 3257 -15 2273 107 0 0 chr12 20644292 20644592 -123141863 + AluSq SINE Alu 6 305 -8 778 116 126 0 chr12 20645050 20645240 -123141215 + AluY SINE Alu 79 292 -19 424 293 89 19 chr12 20645917 20646187 -123140268 - L1MC4a LINE L1 -1871 5937 5649 301 234 70 63 chr12 20646223 20646307 -123140148 - L1MC4a LINE L1 -709 5461 5374 2189 125 3 0 chr12 20646307 20646612 -123139843 - AluSq SINE Alu -7 306 1 301 234 70 63 chr12 20646612 20646685 -123139770 - L1MC4a LINE L1 -796 5374 5303 467 116 0 109 chr12 20648817 20648955 -123137500 - AluSc SINE Alu -52 257 135 2135 112 34 0 chr12 20648959 20649254 -123137201 - AluSq SINE Alu -8 305 1 980 133 7 0 chr12 20649254 20649405 -123137050 - L1MC1 LINE L1 -162 6171 6020 2029 86 0 15 chr12 20649420 20649688 -123136767 + AluSq SINE Alu 35 298 -15 1275 230 14 0 chr12 20649688 20649984 -123136471 - L1MC4a LINE L1 -991 5155 4856 1208 213 32 29 chr12 20650015 20650292 -123136163 + AluJo SINE Alu 5 282 -30 2082 103 47 20 chr12 20650292 20650593 -123135862 - AluSg SINE Alu -1 309 1 531 271 16 0 chr12 20650599 20650728 -123135727 - FLAM_C SINE Alu -2 131 1 1051 128 0 0 chr12 20651395 20651577 -123134878 + AluSg/x SINE Alu 135 316 0 1104 53 0 0 chr12 20652097 20652228 -123134227 - AluY SINE Alu -12 299 169 1457 134 119 15 chr12 20652411 20652680 -123133775 - AluSg1 SINE Alu -12 297 1 2225 100 37 0 chr12 20652750 20653049 -123133406 - AluSx SINE Alu -2 310 1 2155 80 7 31 chr12 20653062 20653380 -123133075 - AluY SINE Alu 0 311 1 53 30 0 0 chr12 20653563 20653630 -123132825 + AT_rich Low_complexity Low_complexity 1 67 0 1425 181 19 37 chr12 20653703 20653973 -123132482 + AluJo SINE Alu 1 265 -47 850 208 6 51 chr12 20654159 20654337 -123132118 - AluJb SINE Alu -24 288 119 755 78 8 23 chr12 20654370 20654498 -123131957 + (TTC)n Simple_repeat Simple_repeat 2 127 0 836 144 8 0 chr12 20654505 20654637 -123131818 - FLAM_C SINE Alu -2 141 9 2657 203 133 25 chr12 20654646 20655317 -123131138 + MER21B LTR ERV1 85 827 -36 240 234 16 16 chr12 20655330 20655394 -123131061 - MLT1J2 LTR MaLR -315 135 72 227 191 21 0 chr12 20655654 20655701 -123130754 + Looper DNA T2_type 874 921 -637 2464 56 0 16 chr12 20656394 20656698 -123129757 - AluY SINE Alu -12 299 1 868 195 16 5 chr12 20657211 20657396 -123129059 - AluSg/x SINE Alu -1 311 125 2063 122 3 7 chr12 20657534 20657829 -123128626 - AluSq SINE Alu -19 294 1 320 231 103 79 chr12 20657897 20658100 -123128355 + MLT1J LTR MaLR 238 445 -66 1720 146 11 7 chr12 20658103 20658383 -123128072 - AluJb SINE Alu -10 302 22 517 86 0 0 chr12 20658383 20658453 -123128002 + AluSp/q SINE Alu 233 302 -11 1799 178 111 111 chr12 20658705 20658959 -123127496 - MLT2B2 LTR ERVL -8 507 254 1981 120 27 20 chr12 20658959 20659260 -123127195 - AluSx SINE Alu -9 303 1 1799 178 111 111 chr12 20659260 20659437 -123127018 - MLT2B2 LTR ERVL -261 254 73 2191 97 30 0 chr12 20659437 20659735 -123126720 - AluSx SINE Alu -5 307 1 1799 178 111 111 chr12 20659735 20659809 -123126646 - MLT2B2 LTR ERVL -441 74 1 2110 128 7 0 chr12 20660122 20660419 -123126036 + AluJb SINE Alu 1 299 -13 1984 123 10 32 chr12 20660562 20660872 -123125583 - AluSx SINE Alu -9 303 1 473 81 0 0 chr12 20660885 20660947 -123125508 - Alu SINE Alu -255 63 2 494 182 88 54 chr12 20661177 20661325 -123125130 + MLT1J LTR MaLR 318 470 -41 2111 139 0 3 chr12 20661328 20661631 -123124824 - AluSx SINE Alu -10 302 1 2245 67 3 3 chr12 20661783 20662099 -123124356 - AluY SINE Alu 0 316 1 600 274 12 75 chr12 20662369 20662505 -123123950 + MIR SINE MIR 15 158 -104 1927 158 20 10 chr12 20662505 20662808 -123123647 + AluJo SINE Alu 1 306 -6 600 274 12 75 chr12 20662808 20662868 -123123587 + MIR SINE MIR 158 194 -68 2212 134 0 0 chr12 20662868 20663175 -123123280 + AluSx SINE Alu 1 307 -5 600 274 12 75 chr12 20663175 20663229 -123123226 + MIR SINE MIR 194 250 -12 981 136 0 73 chr12 20663242 20663419 -123123036 + AluJb SINE Alu 149 312 0 272 150 0 0 chr12 20663506 20663546 -123122909 - MER2 DNA MER2_type 0 345 306 434 205 0 13 chr12 20663561 20663639 -123122816 - MER2 DNA MER2_type -247 98 22 1999 96 3 99 chr12 20663739 20664083 -123122372 - AluY SINE Alu 0 311 1 2407 101 0 0 chr12 20664110 20664408 -123122047 - AluSx SINE Alu -14 298 1 489 156 117 83 chr12 20664609 20664814 -123121641 + L1MC5 LINE L1 6921 7132 -829 1930 149 0 10 chr12 20664842 20665137 -123121318 + AluSx SINE Alu 1 292 -20 481 231 63 32 chr12 20665420 20665641 -123120814 + AluY SINE Alu 68 295 -16 348 202 91 0 chr12 20665817 20665916 -123120539 + L1MC5 LINE L1 7539 7646 -315 2211 91 3 7 chr12 20666640 20666936 -123119519 + AluSg1 SINE Alu 1 295 -14 1376 166 147 4 chr12 20667254 20667375 -123119080 + AluJb SINE Alu 2 104 -208 9396 41 3 2 chr12 20667375 20669288 -123117167 - L1PA4 LINE L1 -1 6154 4241 1376 166 147 4 chr12 20669288 20669431 -123117024 + AluJb SINE Alu 104 304 -8 1896 170 0 0 chr12 20670810 20671099 -123115356 + AluJb SINE Alu 1 289 -23 1898 161 0 7 chr12 20671502 20671801 -123114654 + AluSx SINE Alu 1 297 -15 533 108 0 0 chr12 20671910 20671984 -123114471 - AluS SINE Alu -237 75 2 2032 117 10 7 chr12 20672025 20672323 -123114132 + AluSx SINE Alu 1 299 -13 2257 82 3 3 chr12 20673004 20673295 -123113160 - AluSx SINE Alu -21 291 1 273 279 117 56 chr12 20673368 20673547 -123112908 + MIR SINE MIR 61 250 -12 1492 83 10 5 chr12 20675386 20675579 -123110876 + AluSp SINE Alu 98 291 -22 2041 157 0 0 chr12 20675789 20676113 -123110342 - AluSx SINE Alu 0 312 1 601 164 0 29 chr12 20676201 20676305 -123110150 + AluSq/x SINE Alu 26 126 -186 1178 184 56 16 chr12 20677465 20677715 -123108740 - AluJo SINE Alu -1 311 52 1876 139 26 35 chr12 20677775 20678085 -123108370 - AluJb SINE Alu -5 307 1 4710 101 24 24 chr12 20678106 20678780 -123107675 - L1PB2 LINE L1 -1 6150 5474 2219 83 31 0 chr12 20678780 20679068 -123107387 - AluSc SINE Alu -12 297 1 4710 101 24 24 chr12 20679068 20679113 -123107342 - L1PB2 LINE L1 -676 5475 5431 744 155 0 62 chr12 20679117 20679278 -123107177 - L1PB2 LINE L1 -787 5359 5209 1773 167 26 7 chr12 20679540 20679846 -123106609 - AluJb SINE Alu 0 312 1 2075 112 0 4 chr12 20679900 20680176 -123106279 + AluSx SINE Alu 25 299 -13 2165 90 38 0 chr12 20680177 20680465 -123105990 + AluSp SINE Alu 3 301 -12 604 98 19 2 chr12 20681034 20681130 -123105325 - LTR17 LTR ERV1 -354 360 247 2264 95 0 3 chr12 20681159 20681453 -123105002 + AluSc SINE Alu 1 293 -16 2112 115 3 3 chr12 20681453 20681740 -123104715 + AluSx SINE Alu 1 287 -25 2100 134 7 0 chr12 20681822 20682114 -123104341 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr12 20682645 20682666 -123103789 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 20682769 20682798 -123103657 + AT_rich Low_complexity Low_complexity 1 29 0 280 307 80 29 chr12 20683276 20683413 -123103042 - MIR3 SINE MIR -27 181 38 1837 124 17 44 chr12 20684148 20684340 -123102115 - AluSg SINE Alu 0 300 138 1984 98 40 11 chr12 20684340 20684494 -123101961 - AluSc SINE Alu -24 285 118 2484 77 0 3 chr12 20684494 20684804 -123101651 - AluY SINE Alu -2 309 1 1984 98 40 11 chr12 20684804 20684926 -123101529 - AluSc SINE Alu -191 118 1 1837 124 17 44 chr12 20684926 20685061 -123101394 - AluSg SINE Alu -162 138 1 2051 122 31 0 chr12 20685280 20685566 -123100889 + AluSx SINE Alu 4 298 -14 568 170 21 112 chr12 20685982 20686024 -123100431 - Charlie2 DNA MER1_type -13 2849 2805 1855 176 0 13 chr12 20686024 20686330 -123100125 + AluJb SINE Alu 1 302 -10 568 170 21 112 chr12 20686330 20686402 -123100053 - Charlie2 DNA MER1_type -57 2805 2728 2186 129 3 0 chr12 20686402 20686711 -123099744 + AluSq SINE Alu 1 310 -3 568 170 21 112 chr12 20686711 20686746 -123099709 - Charlie2 DNA MER1_type -134 2728 2717 2082 139 0 3 chr12 20686746 20687047 -123099408 - AluSx SINE Alu -12 300 1 568 170 21 112 chr12 20687047 20687083 -123099372 - Charlie2 DNA MER1_type -145 2717 2679 2077 126 0 7 chr12 20687083 20687391 -123099064 - AluSq SINE Alu 0 306 1 2102 95 74 0 chr12 20687767 20688050 -123098405 + AluSp SINE Alu 1 304 -9 1739 152 29 0 chr12 20688263 20688559 -123097896 - AluJb SINE Alu 0 304 1 23 54 0 0 chr12 20688792 20688829 -123097626 + AT_rich Low_complexity Low_complexity 1 37 0 504 293 60 28 chr12 20689220 20689357 -123097098 + MIR SINE MIR 6 156 -106 1687 171 109 50 chr12 20689357 20689761 -123096694 - MSTC LTR MaLR 0 428 1 504 293 60 28 chr12 20689761 20689872 -123096583 + MIR SINE MIR 156 262 0 23 33 0 0 chr12 20689951 20689981 -123096474 + AT_rich Low_complexity Low_complexity 1 30 0 2568 35 0 0 chr12 20690157 20690446 -123096009 + AluY SINE Alu 1 289 -22 734 252 129 31 chr12 20690969 20691255 -123095200 + L1MC/D LINE L1 5344 5657 -2151 1586 109 154 16 chr12 20691335 20691619 -123094836 + AluJb SINE Alu 4 321 0 1639 97 0 9 chr12 20692000 20692216 -123094239 + AluSp SINE Alu 85 298 -15 1953 99 74 14 chr12 20692424 20692707 -123093748 + AluSx SINE Alu 1 300 -12 2163 106 0 20 chr12 20692769 20693108 -123093347 + AluSg SINE Alu 1 310 0 245 174 0 0 chr12 20694804 20694850 -123091605 + L2 LINE L2 3267 3312 -1 500 200 44 15 chr12 20695658 20695793 -123090662 + MIR SINE MIR 124 262 0 330 281 170 0 chr12 20696166 20696319 -123090136 + MER91A DNA MER1_type 18 196 0 2254 113 0 13 chr12 20696410 20696721 -123089734 - AluSc SINE Alu -2 307 1 183 42 0 0 chr12 20696729 20696753 -123089702 + (TTA)n Simple_repeat Simple_repeat 1 24 0 701 147 0 0 chr12 20696754 20696856 -123089599 - FLAM_C SINE Alu -20 123 22 883 98 8 0 chr12 20696867 20696999 -123089456 - MER41B LTR ERV1 0 635 503 3375 74 7 35 chr12 20697725 20698027 -123088428 - MER41A LTR ERV1 -106 448 162 2210 114 7 0 chr12 20698027 20698333 -123088122 - AluSg SINE Alu -2 308 1 3375 74 7 35 chr12 20698333 20698491 -123087964 - MER41A LTR ERV1 -392 162 1 640 241 76 0 chr12 20698623 20698781 -123087674 + MER96 DNA MER1_type 2 171 -4 1736 139 0 0 chr12 20698840 20699078 -123087377 + AluSx SINE Alu 59 296 -16 1790 151 30 26 chr12 20699177 20699481 -123086974 + AluSx SINE Alu 1 305 -7 639 0 0 0 chr12 20699800 20699871 -123086584 + (CAATA)n Simple_repeat Simple_repeat 1 71 0 1606 193 25 0 chr12 20700061 20700335 -123086120 + AluJb SINE Alu 1 281 -31 192 40 0 0 chr12 20700339 20700364 -123086091 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1748 90 5 0 chr12 20700555 20700778 -123085677 - AluSq SINE Alu -8 305 82 829 134 0 0 chr12 20700778 20700897 -123085558 - AluSx SINE Alu -12 300 182 717 148 0 0 chr12 20700897 20701005 -123085450 - AluSx SINE Alu -203 109 2 2204 123 0 3 chr12 20701017 20701325 -123085130 - AluY SINE Alu -4 307 1 2216 111 0 3 chr12 20701564 20701861 -123084594 - AluSx SINE Alu -16 296 1 2168 110 3 3 chr12 20701863 20702155 -123084300 - AluSc SINE Alu -17 292 1 2564 160 10 53 chr12 20702157 20702378 -123084077 + MER4E LTR ERV1 268 497 -282 1717 186 0 19 chr12 20702378 20702685 -123083770 - AluJb SINE Alu -11 301 1 2564 160 10 53 chr12 20702685 20702968 -123083487 + MER4E LTR ERV1 497 750 -29 576 93 0 0 chr12 20702977 20703052 -123083403 + AluJb SINE Alu 192 266 -46 2304 75 7 13 chr12 20703462 20703767 -123082688 + AluSc SINE Alu 1 303 -6 2115 111 0 0 chr12 20703802 20704082 -123082373 + AluSx SINE Alu 1 280 -32 2322 90 0 17 chr12 20704176 20704477 -123081978 - AluSq SINE Alu -11 302 7 2083 122 24 0 chr12 20704483 20704779 -123081676 - AluSg SINE Alu -7 303 1 189 346 110 8 chr12 20704835 20704962 -123081493 + L2 LINE L2 994 1133 -2181 2092 145 3 3 chr12 20705217 20705528 -123080927 + AluSx SINE Alu 1 311 -1 1081 224 127 0 chr12 20705553 20705798 -123080657 + AluSx SINE Alu 30 305 -7 1897 128 23 0 chr12 20706026 20706291 -123080164 + AluSg SINE Alu 6 276 -34 1317 112 0 0 chr12 20706654 20706824 -123079631 - AluSq SINE Alu -18 295 126 2461 89 0 3 chr12 20706934 20707247 -123079208 + AluSx SINE Alu 1 312 0 216 111 0 0 chr12 20707459 20707495 -123078960 + (CCG)n Simple_repeat Simple_repeat 1 36 0 240 186 0 0 chr12 20707523 20707566 -123078889 + CT-rich Low_complexity Low_complexity 2 44 0 195 69 0 0 chr12 20707680 20707709 -123078746 + (TCC)n Simple_repeat Simple_repeat 1 29 0 230 153 17 0 chr12 20707935 20707994 -123078461 + C-rich Low_complexity Low_complexity 3 62 0 237 258 43 21 chr12 20708362 20708455 -123078000 - Charlie2 DNA MER1_type -4 2858 2764 2269 170 165 39 chr12 20708485 20709208 -123077247 - Charlie2 DNA MER1_type -185 2677 1864 753 248 28 64 chr12 20709213 20709495 -123076960 - Charlie2 DNA MER1_type -2554 308 37 1064 186 145 9 chr12 20709728 20709949 -123076506 + AluSg SINE Alu 1 251 -59 1954 137 102 75 chr12 20709949 20710470 -123075985 - MER39 LTR ERV1 -21 686 181 1718 152 18 79 chr12 20710470 20710800 -123075655 + AluJb SINE Alu 1 310 -2 1954 137 102 75 chr12 20710800 20710817 -123075638 - MER39 LTR ERV1 -526 181 166 4163 130 13 3 chr12 20710817 20711446 -123075009 - MER41B LTR ERV1 0 635 1 1954 137 102 75 chr12 20711446 20711504 -123074951 - MER39 LTR ERV1 -541 166 1 230 152 0 0 chr12 20711508 20711541 -123074914 - L2 LINE L2 -36 3236 3204 1341 152 171 12 chr12 20711834 20712091 -123074364 + AluSc SINE Alu 1 298 -1 792 142 122 14 chr12 20712091 20712239 -123074216 + AluJb SINE Alu 134 297 -15 377 318 14 34 chr12 20712746 20712894 -123073561 + MER5C DNA MER1_type 11 155 -169 2395 91 3 0 chr12 20712899 20713196 -123073259 + AluSp SINE Alu 1 298 -15 2496 58 0 0 chr12 20713227 20713522 -123072933 + AluY SINE Alu 1 295 -16 2207 100 0 0 chr12 20713532 20713811 -123072644 + AluSq SINE Alu 2 280 -33 285 29 0 0 chr12 20713811 20713845 -123072610 + (CA)n Simple_repeat Simple_repeat 1 34 0 1187 183 13 22 chr12 20713908 20714132 -123072323 - AluJb SINE Alu -6 306 85 279 238 100 0 chr12 20714140 20714220 -123072235 + LTR33 LTR ERVL 8 95 -426 2110 192 38 38 chr12 20714222 20714496 -123071959 - Charlie1b DNA MER1_type -2240 521 245 897 104 0 22 chr12 20714496 20714631 -123071824 - FLAM_C SINE Alu 0 133 2 2110 192 38 38 chr12 20714631 20714877 -123071578 - Charlie1b DNA MER1_type -2515 246 1 2344 68 0 0 chr12 20714947 20715226 -123071229 + AluY SINE Alu 27 305 -6 233 258 65 0 chr12 20715347 20715409 -123071046 + LTR33 LTR ERVL 303 368 -153 760 241 24 12 chr12 20715549 20715719 -123070736 + MER5A DNA MER1_type 9 180 -9 2424 84 3 0 chr12 20715723 20716020 -123070435 - AluSp SINE Alu -15 298 1 1407 178 4 32 chr12 20716031 20716284 -123070171 - AluJo SINE Alu -21 291 46 1926 124 0 11 chr12 20716301 20716575 -123069880 - AluY SINE Alu -38 273 3 2414 103 3 0 chr12 20716581 20716893 -123069562 - AluSp SINE Alu 0 313 1 343 307 34 80 chr12 20716939 20717115 -123069340 + L1ME3A LINE L1 5761 5928 -242 353 127 0 0 chr12 20717250 20717305 -123069150 + Alu SINE Alu 1 55 -247 293 185 15 0 chr12 20717329 20717394 -123069061 + GA-rich Low_complexity Low_complexity 2 67 0 1328 148 21 100 chr12 20717402 20717741 -123068714 + L1MB5 LINE L1 5860 6171 -3 2219 129 0 0 chr12 20717837 20718147 -123068308 + AluSx SINE Alu 1 310 -2 28 0 0 0 chr12 20718163 20718191 -123068264 + AT_rich Low_complexity Low_complexity 1 28 0 2472 63 0 10 chr12 20718191 20718492 -123067963 + AluY SINE Alu 1 298 -13 183 304 101 0 chr12 20718581 20718660 -123067795 + L2 LINE L2 2972 3058 -214 216 226 194 0 chr12 20718758 20718820 -123067635 + L2 LINE L2 3194 3267 -5 857 196 6 18 chr12 20718925 20719093 -123067362 + FRAM SINE Alu 1 166 0 2369 108 0 0 chr12 20719148 20719455 -123067000 - AluSg SINE Alu -3 307 1 2110 128 0 3 chr12 20719837 20720142 -123066313 + AluSx SINE Alu 1 304 0 727 193 0 57 chr12 20720286 20720426 -123066029 + FLAM_C SINE Alu 2 133 0 2327 87 0 10 chr12 20720441 20720740 -123065715 + AluSc SINE Alu 1 296 -13 526 254 18 0 chr12 20720792 20720906 -123065549 - FLAM_C SINE Alu -25 118 3 1866 130 56 18 chr12 20720939 20721058 -123065397 + AluSq SINE Alu 1 114 -199 2226 93 4 0 chr12 20721058 20721373 -123065082 + AluSp SINE Alu 2 317 0 1866 130 56 18 chr12 20721373 20721537 -123064918 + AluSq SINE Alu 114 296 -17 1045 179 0 0 chr12 20721541 20721714 -123064741 + FRAM SINE Alu 1 167 -9 1555 152 35 48 chr12 20722046 20722173 -123064282 + AluSx SINE Alu 16 143 -169 243 0 0 0 chr12 20722173 20722200 -123064255 + (TG)n Simple_repeat Simple_repeat 2 28 0 231 36 0 0 chr12 20722199 20722227 -123064228 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1555 152 35 48 chr12 20722200 20722388 -123064067 + AluSx SINE Alu 143 300 -12 1515 194 0 38 chr12 20722454 20722768 -123063687 + AluJo SINE Alu 1 302 -10 2405 91 7 7 chr12 20723324 20723632 -123062823 - AluSq SINE Alu -5 308 1 315 0 0 0 chr12 20724267 20724302 -123062153 + (TG)n Simple_repeat Simple_repeat 2 36 0 2157 104 0 14 chr12 20724302 20724591 -123061864 - AluSx SINE Alu -27 285 1 2188 109 20 0 chr12 20724593 20724887 -123061568 - AluSg SINE Alu -10 300 1 4957 244 48 30 chr12 20724891 20724916 -123061539 - L1PBa LINE L1 -5212 1651 1628 1201 185 60 63 chr12 20724916 20725247 -123061208 - AluJb SINE Alu 0 302 2 1467 169 0 99 chr12 20725253 20725456 -123060999 - AluJb SINE Alu 0 330 172 2312 113 10 0 chr12 20725456 20725765 -123060690 - AluSx SINE Alu 0 312 1 1467 169 0 99 chr12 20725765 20725922 -123060533 - AluJb SINE Alu -158 172 1 4957 244 48 30 chr12 20725922 20727783 -123058672 - L1PBa LINE L1 -5239 1624 639 2282 66 11 0 chr12 20727783 20728070 -123058385 + AluY SINE Alu 1 290 -21 4957 244 48 30 chr12 20728070 20728720 -123057735 - L1PBa LINE L1 -6224 639 3 2587 123 22 75 chr12 20728733 20729037 -123057418 - LTR39 LTR ERV1 -304 479 160 2036 114 27 7 chr12 20729037 20729335 -123057120 - AluSx SINE Alu -6 306 3 2587 123 22 75 chr12 20729335 20729423 -123057032 - LTR39 LTR ERV1 -623 160 117 2355 91 3 3 chr12 20729423 20729732 -123056723 - AluSc SINE Alu 0 309 1 2587 123 22 75 chr12 20729732 20729844 -123056611 - LTR39 LTR ERV1 -666 117 1 327 138 17 0 chr12 20729846 20729904 -123056551 - L1MC1 LINE L1 -107 6226 6168 4146 60 0 5 chr12 20781523 20782094 -123004361 + L1P3 LINE L1 5254 5821 -351 1346 156 9 130 chr12 20782089 20782513 -123003942 + L1PA12 LINE L1 2699 3064 -4510 * 445 324 242 16 chr12 20783007 20783371 -123003084 + L2 LINE L2 2847 3292 -21 195 42 0 0 chr12 20783379 20783403 -123003052 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 183 80 0 0 chr12 20783984 20784009 -123002446 + (TATG)n Simple_repeat Simple_repeat 4 28 0 22 0 0 0 chr12 20784539 20784561 -123001894 + AT_rich Low_complexity Low_complexity 1 22 0 1615 181 33 26 chr12 20784583 20784886 -123001569 + AluJo SINE Alu 1 305 -7 261 384 15 0 chr12 20785184 20785317 -123001138 + L2 LINE L2 2198 2332 -982 238 148 93 0 chr12 20785317 20785371 -123001084 + L1PB4 LINE L1 6098 6156 0 758 214 9 86 chr12 20785599 20785809 -123000646 + MIR SINE MIR 59 252 -10 2342 92 0 10 chr12 20785811 20786117 -123000338 - AluSg SINE Alu -7 303 1 199 420 35 18 chr12 20786145 20786314 -123000141 + L2 LINE L2 2555 2726 -588 4932 125 59 25 chr12 20787338 20787726 -122998729 - L1MA8 LINE L1 -25 6266 5893 1673 157 88 64 chr12 20787726 20788119 -122998336 + LTR54 LTR ERV1 1 410 -100 2242 87 0 7 chr12 20788119 20788408 -122998047 - AluSc SINE Alu -22 287 1 1673 157 88 64 chr12 20788408 20788512 -122997943 + LTR54 LTR ERV1 410 510 0 4932 125 59 25 chr12 20788512 20789069 -122997386 - L1MA8 LINE L1 -398 5893 5289 29 0 0 0 chr12 20789083 20789112 -122997343 + AT_rich Low_complexity Low_complexity 1 29 0 353 277 54 0 chr12 20791082 20791212 -122995243 + L1ME3A LINE L1 6023 6159 -11 495 342 39 9 chr12 20791440 20791671 -122994784 - MIR SINE MIR -5 257 20 301 208 13 26 chr12 20792731 20792808 -122993647 - L1MC5 LINE L1 -306 7655 7580 2517 126 10 3 chr12 20792810 20793199 -122993256 - L1PA15 LINE L1 -3 6162 5771 5304 106 10 0 chr12 20793214 20794026 -122992429 - L1PB1 LINE L1 -8 6859 6040 394 222 8 8 chr12 20794022 20794139 -122992316 - L1PB1 LINE L1 -1029 5833 5717 * 1086 275 55 15 chr12 20794164 20794687 -122991768 - L1PB1 LINE L1 -6314 549 6 2130 75 14 0 chr12 20794704 20794996 -122991459 - AluY SINE Alu -15 296 1 7885 245 35 47 chr12 20795007 20799512 -122986943 - L1PA12 LINE L1 -2580 5004 1101 7191 197 41 34 chr12 20799512 20801342 -122985113 + L1PA14 LINE L1 3671 5520 -641 1988 155 3 0 chr12 20801342 20801639 -122984816 + AluSx SINE Alu 1 298 -14 7191 197 41 34 chr12 20801639 20802278 -122984177 + L1PA14 LINE L1 5520 6153 -8 7885 245 35 47 chr12 20802278 20803351 -122983104 - L1PA12 LINE L1 -6483 1101 17 6901 195 33 21 chr12 20803346 20806138 -122980317 - L1PA16 LINE L1 -11 6858 4044 * 2559 50 0 0 chr12 20806144 20806443 -122980012 - AluY SINE Alu -12 299 1 3522 118 0 27 chr12 20806443 20807043 -122979412 - L1PA16 LINE L1 -3984 2865 2282 288 239 45 0 chr12 20807066 20807221 -122979234 + (TTATA)n Simple_repeat Simple_repeat 2 163 0 84 92 0 6 chr12 20807247 20807561 -122978894 + AT_rich Low_complexity Low_complexity 1 45 0 270 267 53 15 chr12 20807618 20807749 -122978706 - L1ME LINE L1 -393 5728 5593 29 0 0 0 chr12 20807851 20807880 -122978575 + AT_rich Low_complexity Low_complexity 1 29 0 1752 175 7 26 chr12 20808529 20808837 -122977618 - AluJo SINE Alu -8 304 3 233 310 120 0 chr12 20808906 20809006 -122977449 + MIR SINE MIR 148 259 -3 272 281 89 0 chr12 20809313 20809448 -122977007 + L1ME3A LINE L1 4143 4289 -1857 1137 296 104 7 chr12 20809468 20810469 -122975986 + L1ME3A LINE L1 4620 5724 -446 331 286 0 0 chr12 20810475 20810566 -122975889 + L1MC4 LINE L1 6613 6703 -1339 359 162 27 0 chr12 20810566 20810640 -122975815 + (TATG)n Simple_repeat Simple_repeat 2 77 0 222 37 0 0 chr12 20810640 20810667 -122975788 + (CA)n Simple_repeat Simple_repeat 2 28 0 1406 234 40 40 chr12 20810668 20811143 -122975312 + L1ME3A LINE L1 5691 6165 -5 666 268 86 71 chr12 20811194 20811926 -122974529 + L1ME3A LINE L1 4381 5123 -1023 262 268 26 8 chr12 20812048 20812176 -122974279 + L1ME3A LINE L1 5293 5422 -740 413 294 53 0 chr12 20812212 20812382 -122974073 + L1ME3A LINE L1 5771 5949 -221 22 0 0 0 chr12 20813407 20813429 -122973026 + AT_rich Low_complexity Low_complexity 1 22 0 2284 158 59 2 chr12 20813945 20814351 -122972104 - MSTB1 LTR MaLR 0 432 4 279 54 0 0 chr12 20814557 20814594 -122971861 + (TG)n Simple_repeat Simple_repeat 2 38 0 2130 108 3 23 chr12 20814946 20815251 -122971204 - AluSx SINE Alu -13 299 1 407 324 125 0 chr12 20815552 20815728 -122970727 + MIR SINE MIR 57 254 -8 21 36 0 0 chr12 20815798 20815826 -122970629 + AT_rich Low_complexity Low_complexity 1 28 0 2411 54 10 3 chr12 20815929 20816227 -122970228 + AluY SINE Alu 1 300 -11 299 136 23 0 chr12 20816426 20816470 -122969985 - Tigger5 DNA MER2_type 0 2323 2279 2400 32 4 4 chr12 20816522 20816837 -122969618 - AluY SINE Alu 0 315 1 2553 43 3 3 chr12 20817087 20817392 -122969063 + AluY SINE Alu 1 305 -6 289 271 49 57 chr12 20817585 20817708 -122968747 - MIR SINE MIR -60 148 28 2324 59 29 10 chr12 20817796 20818102 -122968353 + AluSq SINE Alu 1 312 -1 309 340 59 13 chr12 20819310 20819463 -122966992 - L3b LINE CR1 -80 1503 1344 22 0 0 0 chr12 20819651 20819673 -122966782 + AT_rich Low_complexity Low_complexity 1 22 0 476 288 84 77 chr12 20820095 20820380 -122966075 + L2 LINE L2 2175 2461 -853 234 91 0 0 chr12 20820524 20820557 -122965898 + (TA)n Simple_repeat Simple_repeat 1 33 0 764 246 27 58 chr12 20820581 20820841 -122965614 - MLT1J LTR MaLR -241 270 19 453 347 62 32 chr12 20821443 20821812 -122964643 - L2 LINE L2 -1121 2193 1814 268 378 8 0 chr12 20822426 20822545 -122963910 - MIR SINE MIR 0 262 143 1739 188 27 0 chr12 20823151 20823444 -122963011 - AluJo SINE Alu -11 301 1 266 375 81 22 chr12 20824243 20824379 -122962076 - L2 LINE L2 -4 3268 3125 315 120 93 27 chr12 20825616 20825691 -122960764 - L1PA8 LINE L1 0 6172 6093 22 35 0 0 chr12 20826595 20826624 -122959831 + AT_rich Low_complexity Low_complexity 1 29 0 287 175 0 0 chr12 20827536 20827593 -122958862 + L1 LINE L1 5201 5257 -889 318 207 0 0 chr12 20827693 20827751 -122958704 + MSTA LTR MaLR 369 426 -2 23 0 0 0 chr12 20827836 20827859 -122958596 + AT_rich Low_complexity Low_complexity 1 23 0 278 231 0 51 chr12 20827882 20827960 -122958495 + MER93b LTR ERV1 270 343 -30 24 0 0 0 chr12 20829915 20829939 -122956516 + AT_rich Low_complexity Low_complexity 1 24 0 371 293 207 0 chr12 20830130 20830304 -122956151 - MIR SINE MIR -43 219 10 403 265 94 12 chr12 20830332 20830502 -122955953 - L1MC4a LINE L1 -1898 5910 5727 539 295 0 7 chr12 20830518 20830657 -122955798 - L2 LINE L2 0 3313 3176 459 194 65 0 chr12 20830803 20830911 -122955544 - L1MD2 LINE L1 -22 6337 6223 1065 133 0 0 chr12 20830911 20831062 -122955393 + THE1C LTR MaLR 1 151 -224 373 220 55 49 chr12 20831407 20831576 -122954879 + MLT1I LTR MaLR 231 565 -2 250 167 130 19 chr12 20831576 20831630 -122954825 - L2 LINE L2 -685 2629 2570 295 224 61 3 chr12 20831764 20831875 -122954580 - L1M3 LINE L1 -677 5491 5370 428 264 38 44 chr12 20831962 20832121 -122954334 - MIR SINE MIR -2 260 103 27861 44 2 0 chr12 20832132 20835540 -122950915 + L1P LINE L1 4 3418 -2728 626 312 32 28 chr12 20836840 20837058 -122949397 - MIR SINE MIR -27 235 17 616 288 132 0 chr12 20837084 20837296 -122949159 + MIR SINE MIR 23 262 0 223 255 39 69 chr12 20837478 20837580 -122948875 + MIR SINE MIR 49 147 -115 850 284 88 15 chr12 20838789 20838886 -122947569 - L1MD2 LINE L1 -2021 5787 5699 578 89 0 0 chr12 20838886 20838965 -122947490 - MADE1 DNA Mariner 0 80 2 850 284 88 15 chr12 20838965 20839275 -122947180 - L1MD2 LINE L1 -2109 5699 5350 441 324 66 23 chr12 20839308 20839567 -122946888 - L1MD2 LINE L1 -896 5250 4981 217 316 88 9 chr12 20840215 20840329 -122946126 - L2 LINE L2 -10 3303 3181 338 217 29 0 chr12 20840601 20840670 -122945785 - L2 LINE L2 -14 3258 3188 310 311 86 106 chr12 20840694 20840998 -122945457 - L2 LINE L2 -38 3234 2936 3329 86 286 0 chr12 20840998 20841533 -122944922 + LTR12 LTR ERV1 1 688 0 310 311 86 106 chr12 20841533 20841578 -122944877 - L2 LINE L2 -336 2936 2892 255 299 124 29 chr12 20841604 20841741 -122944714 - L2 LINE L2 -480 2834 2685 4403 176 33 1 chr12 20841770 20842618 -122943837 - L1P LINE L1 -1407 4739 3865 5629 122 18 10 chr12 20842619 20844066 -122942389 + L1PA14 LINE L1 4704 6161 0 641 162 84 7 chr12 20844130 20844272 -122942183 + L1MA9 LINE L1 6159 6311 -1 1300 222 19 0 chr12 20844298 20844559 -122941896 + AluJo SINE Alu 1 266 -46 2216 207 26 42 chr12 20844772 20845274 -122941181 - MER52A LTR ERV1 0 1755 1262 1611 142 8 0 chr12 20845376 20845644 -122940811 - L1 LINE L1 -907 5239 4970 780 106 28 14 chr12 20845659 20845801 -122940654 + CT-rich Low_complexity Low_complexity 2 145 0 969 165 11 27 chr12 20845808 20845996 -122940459 - L1 LINE L1 -1193 4953 4769 540 349 66 37 chr12 20846122 20846155 -122940300 + L2 LINE L2 2437 2468 -846 3457 137 27 0 chr12 20846155 20846668 -122939787 + MER1A DNA MER1_type 1 527 0 540 349 66 37 chr12 20846668 20847041 -122939414 + L2 LINE L2 2468 2855 -459 1422 165 32 19 chr12 20847058 20847373 -122939082 - L1MA9 LINE L1 -10 6302 5984 387 291 137 38 chr12 20847407 20847750 -122938705 + L2 LINE L2 2830 3206 -107 312 208 150 17 chr12 20847843 20847963 -122938492 + L2 LINE L2 3159 3294 -19 642 231 173 91 chr12 20848126 20848664 -122937791 + MER34C LTR ERV1 4 585 0 243 367 47 16 chr12 20849083 20849211 -122937244 + MIR3 SINE MIR 70 201 -7 971 209 107 0 chr12 20849413 20849628 -122936827 - MIR SINE MIR -5 257 20 443 231 154 13 chr12 20850438 20850601 -122935854 - MIR3 SINE MIR -14 194 15 22 0 0 0 chr12 20850989 20851011 -122935444 + AT_rich Low_complexity Low_complexity 1 22 0 1006 238 105 13 chr12 20851258 20851616 -122934839 - MER57A LTR ERV1 0 403 48 371 172 83 41 chr12 20852267 20852412 -122934043 - LTR37B LTR ERV1 -107 361 211 716 129 0 0 chr12 20852541 20852642 -122933813 - L1PA10 LINE L1 -13 6155 6055 5008 103 8 1 chr12 20852642 20853360 -122933095 + L1P LINE L1 3614 4339 -1807 563 222 45 45 chr12 20853377 20853575 -122932880 - LTR37B LTR ERV1 -270 198 1 339 297 0 17 chr12 20853845 20853963 -122932492 - L1MC5 LINE L1 -44 7917 7802 2775 221 67 41 chr12 20853993 20854031 -122932424 - L1ME1 LINE L1 0 6239 6203 856 124 0 0 chr12 20854031 20854152 -122932303 - L1PA10 LINE L1 -12 6156 6036 2775 221 67 41 chr12 20854152 20854727 -122931728 - L1ME1 LINE L1 -36 6203 5644 1974 136 144 24 chr12 20854727 20855109 -122931346 + MSTA LTR MaLR 1 428 0 2775 221 67 41 chr12 20855109 20855202 -122931253 - L1ME1 LINE L1 -595 5644 5555 2195 110 3 0 chr12 20855202 20855501 -122930954 + AluSg SINE Alu 4 303 -7 2775 221 67 41 chr12 20855501 20855895 -122930560 - L1ME1 LINE L1 -684 5555 5129 1674 252 73 42 chr12 20855919 20856031 -122930424 - L1ME1 LINE L1 -3321 2894 2787 2184 113 139 16 chr12 20856031 20856412 -122930043 + MSTA LTR MaLR 1 428 0 1674 252 73 42 chr12 20856412 20857077 -122929378 - L1ME1 LINE L1 -3428 2787 2116 2028 151 26 83 chr12 20857077 20857535 -122928920 + MSTB1 LTR MaLR 1 432 0 1674 252 73 42 chr12 20857535 20857903 -122928552 - L1ME1 LINE L1 -4099 2116 1761 272 184 0 0 chr12 20857962 20858011 -122928444 - U7 snRNA snRNA -14 49 1 376 162 108 18 chr12 20859179 20859290 -122927165 - LTR37B LTR ERV1 0 468 348 28 0 0 0 chr12 20861259 20861287 -122925168 + AT_rich Low_complexity Low_complexity 1 28 0 3597 139 18 21 chr12 20861298 20861915 -122924540 - L1MB1 LINE L1 -1 6167 5553 366 279 106 0 chr12 20862345 20862449 -122924006 + MIR3 SINE MIR 45 159 -49 189 0 0 0 chr12 20862573 20862594 -122923861 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 2091 101 7 0 chr12 20862594 20862871 -122923584 - AluY SINE Alu -29 282 4 867 219 6 6 chr12 20863825 20864008 -122922447 + LTR41 LTR ERVL 1 183 -590 674 248 26 88 chr12 20864180 20864486 -122921969 + LTR41 LTR ERVL 486 772 -1 781 254 147 0 chr12 20864958 20865182 -122921273 + MIR SINE MIR 6 262 0 345 125 0 0 chr12 20865265 20865321 -122921134 + (ATG)n Simple_repeat Simple_repeat 2 57 0 193 309 275 20 chr12 20866555 20866704 -122919751 - MER5A DNA MER1_type -1 188 2 746 310 48 37 chr12 20868507 20868859 -122917596 - L2 LINE L2 -1 3312 2957 203 61 30 0 chr12 20869041 20869074 -122917381 + (GA)n Simple_repeat Simple_repeat 1 34 0 521 210 12 80 chr12 20869118 20869205 -122917250 - MLT1A2 LTR MaLR -223 151 78 2696 94 6 3 chr12 20869205 20869568 -122916887 + THE1B LTR MaLR 1 364 0 521 210 12 80 chr12 20869568 20869642 -122916813 - MLT1A2 LTR MaLR -296 78 1 767 258 0 6 chr12 20870542 20870705 -122915750 + MLT1F1 LTR MaLR 1 162 -431 26 0 0 0 chr12 20871283 20871309 -122915146 + AT_rich Low_complexity Low_complexity 1 26 0 271 202 10 96 chr12 20871581 20871685 -122914770 + MIR SINE MIR 111 205 -57 205 330 35 43 chr12 20871970 20872085 -122914370 + MIR3 SINE MIR 72 185 -23 339 258 0 123 chr12 20872268 20872305 -122914150 - MIR SINE MIR 0 262 222 3200 49 5 2 chr12 20872305 20872712 -122913743 + L1PA6 LINE L1 5744 6151 -3 339 258 0 123 chr12 20872712 20872837 -122913618 - MIR SINE MIR -40 222 120 366 268 116 7 chr12 20873216 20873354 -122913101 - MIR SINE MIR 0 262 110 207 69 0 0 chr12 20873538 20873567 -122912888 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4155 72 24 35 chr12 20873567 20874160 -122912295 - L1PA8 LINE L1 -22 6150 5565 28 29 0 0 chr12 20874692 20874727 -122911728 + AT_rich Low_complexity Low_complexity 1 35 0 475 219 0 9 chr12 20874886 20875000 -122911455 + L1PB4 LINE L1 6043 6155 -1 754 342 127 23 chr12 20875017 20875798 -122910657 - L2 LINE L2 -2096 1218 357 2149 68 6 95 chr12 20875914 20876252 -122910203 + AluSg SINE Alu 1 308 -2 670 192 105 83 chr12 20876256 20876569 -122909886 - LTR56 LTR ERV1 -125 320 1 396 240 70 105 chr12 20876673 20876873 -122909582 + MIR SINE MIR 6 198 -64 327 120 0 167 chr12 20877524 20877632 -122908823 - L1MB3 LINE L1 0 6183 6094 188 260 207 33 chr12 20877926 20878076 -122908379 - MIR SINE MIR -10 252 77 867 228 147 11 chr12 20878831 20879078 -122907377 + MLT1F1 LTR MaLR 321 567 0 2297 306 80 40 chr12 20879092 20880058 -122906397 - L2 LINE L2 -1087 2227 1198 1962 111 35 7 chr12 20880058 20880346 -122906109 + AluSc SINE Alu 1 296 -13 2297 306 80 40 chr12 20880346 20880625 -122905830 - L2 LINE L2 -2116 1198 932 209 336 148 16 chr12 20880865 20880993 -122905462 + L2 LINE L2 3127 3271 -42 231 125 83 0 chr12 20883094 20883142 -122903313 - MER53 DNA DNA -137 52 1 421 306 155 10 chr12 20883171 20883364 -122903091 - MIR SINE MIR -7 255 35 632 284 95 31 chr12 20885658 20886046 -122900409 - L1MC5 LINE L1 -48 7913 7501 1023 224 30 25 chr12 20887316 20887553 -122898902 - MIR SINE MIR -23 239 2 651 198 0 3 chr12 20887609 20887751 -122898704 + L1ME1 LINE L1 6037 6334 0 325 240 69 108 chr12 20887983 20888362 -122898093 - L1MEc LINE L1 -3531 2684 2321 576 246 91 64 chr12 20888551 20888880 -122897575 - L1MEc LINE L1 -4822 1574 1237 552 188 145 7 chr12 20889148 20889286 -122897169 + MIR SINE MIR 106 262 0 251 284 37 12 chr12 20889298 20889379 -122897076 + MIR SINE MIR 109 191 -71 202 209 0 0 chr12 20889405 20889448 -122897007 + (TTG)n Simple_repeat Simple_repeat 2 44 0 478 167 0 44 chr12 20890049 20890163 -122896292 - MER96B DNA MER1_type? -59 358 250 1944 223 43 10 chr12 20890172 20890661 -122895794 - MLT1D LTR MaLR 0 505 1 1981 132 3 14 chr12 20891293 20891589 -122894866 - AluSx SINE Alu -19 293 1 186 156 0 0 chr12 20891707 20891739 -122894716 - MIR SINE MIR -91 117 86 236 341 9 28 chr12 20893015 20893123 -122893332 + MER5A DNA MER1_type 1 117 -72 232 298 99 33 chr12 20893039 20893160 -122893295 - MER5A DNA MER1_type -24 165 37 * 23 0 0 0 chr12 20893443 20893466 -122892989 + AT_rich Low_complexity Low_complexity 1 23 0 1906 132 4 4 chr12 20893492 20893773 -122892682 + AluSx SINE Alu 20 300 -12 676 274 50 39 chr12 20894478 20894759 -122891696 + L1M3e LINE L1 1663 1946 -5084 426 366 0 11 chr12 20894763 20894954 -122891501 + L2 LINE L2 2457 2645 -669 889 196 18 0 chr12 20894965 20895128 -122891327 + MER45A DNA AcHobo 13 178 0 188 333 118 0 chr12 20895156 20895249 -122891206 + L2 LINE L2 2662 2765 -549 878 157 39 0 chr12 20895286 20895439 -122891016 - L1PB1 LINE L1 -21 6130 5972 * 1507 223 11 13 chr12 20895418 20895791 -122890664 - L1 LINE L1 -1059 5087 4716 7619 91 57 33 chr12 20895791 20897021 -122889434 + pTR5 LTR ERV1 763 2021 -417 290 248 30 20 chr12 20897022 20897123 -122889332 + LTR30 LTR ERV1 541 642 -80 885 61 35 0 chr12 20897123 20897238 -122889217 + pTR5 LTR ERV1 66 184 -2254 610 219 65 0 chr12 20897243 20897398 -122889057 - L1PBa LINE L1 -6693 170 6 343 299 90 40 chr12 20897482 20897659 -122888796 + L2 LINE L2 2841 3026 -287 762 281 98 29 chr12 20897670 20898087 -122888368 - MLT1J2 LTR MaLR -3 447 2 477 349 60 5 chr12 20899324 20899539 -122886916 + MIR SINE MIR 1 227 -35 4878 130 32 45 chr12 20899548 20900029 -122886426 - L1PA16 LINE L1 0 6166 5680 2097 108 11 0 chr12 20900029 20900306 -122886149 - AluSg SINE Alu -30 280 1 4878 130 32 45 chr12 20900306 20900836 -122885619 - L1PA16 LINE L1 -486 5680 5167 306 252 8 84 chr12 20900872 20900991 -122885464 + L1MC/D LINE L1 5286 5395 -964 326 319 35 0 chr12 20901059 20901172 -122885283 + L1MC/D LINE L1 5548 5664 -2144 1399 200 13 10 chr12 20901204 20901514 -122884941 - L1P LINE L1 -982 5164 4854 243 291 12 70 chr12 20901536 20901622 -122884833 + L2 LINE L2 3191 3271 -1 548 247 50 108 chr12 20902281 20902662 -122883793 - L1MC4a LINE L1 -1902 5906 5548 181 0 69 0 chr12 20903734 20903763 -122882692 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2230 104 3 0 chr12 20904249 20904548 -122881907 - AluSg SINE Alu -10 300 1 437 253 56 56 chr12 20904573 20904751 -122881704 - MLT1K LTR MaLR -6 582 405 483 230 162 7 chr12 20904752 20904900 -122881555 - MLT1A1 LTR MaLR -194 171 1 1564 258 60 71 chr12 20904903 20905566 -122880889 - MER21B LTR ERV1 -193 670 15 1674 104 5 0 chr12 20905650 20905872 -122880583 - AluSq SINE Alu -13 300 78 261 0 0 0 chr12 20906706 20906735 -122879720 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1965 144 3 3 chr12 20906816 20907114 -122879341 + AluJb SINE Alu 1 298 -14 608 205 26 0 chr12 20908483 20908600 -122877855 + LTR48B LTR ERV1 1 120 -524 464 150 34 122 chr12 20908608 20908755 -122877700 - MLT1E2 LTR MaLR -492 134 1 1999 116 14 0 chr12 20908784 20909069 -122877386 + AluSx SINE Alu 3 291 -21 303 337 129 51 chr12 20909130 20909542 -122876913 - L2 LINE L2 -1 3271 2828 1730 143 39 52 chr12 20910216 20910524 -122875931 - AluSx SINE Alu -8 304 1 22 35 0 0 chr12 20911157 20911186 -122875269 + AT_rich Low_complexity Low_complexity 1 29 0 1817 104 0 4 chr12 20912798 20913047 -122873408 - AluSg SINE Alu -9 301 54 229 240 177 31 chr12 20914873 20914969 -122871486 + MIR SINE MIR 95 204 -58 21 0 0 0 chr12 20914969 20914990 -122871465 + AT_rich Low_complexity Low_complexity 1 21 0 205 175 48 32 chr12 20915054 20915117 -122871338 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 25 75 0 0 chr12 20915119 20915172 -122871283 + AT_rich Low_complexity Low_complexity 1 53 0 572 270 28 39 chr12 20915524 20915729 -122870726 + MIR SINE MIR 37 241 -21 1890 110 31 41 chr12 20915836 20916127 -122870328 + AluSx SINE Alu 1 288 -24 2492 78 0 0 chr12 20916140 20916447 -122870008 + AluSq SINE Alu 3 309 -4 2880 174 20 14 chr12 20916733 20917289 -122869166 - MER89 LTR ERV1 0 559 1 244 349 7 34 chr12 20917338 20917484 -122868971 - L3 LINE CR1 -127 1450 1309 2094 111 3 38 chr12 20917938 20918254 -122868201 - AluSx SINE Alu -5 307 3 2252 89 31 6 chr12 20919126 20919450 -122867005 + L1PA13 LINE L1 5814 6145 -18 213 39 0 0 chr12 20919453 20919479 -122866976 + (TAA)n Simple_repeat Simple_repeat 2 27 0 440 283 152 30 chr12 20919586 20919915 -122866540 + MLT1J1 LTR MaLR 76 444 -2 626 296 129 18 chr12 20920491 20920771 -122865684 - L2 LINE L2 -444 2870 2560 775 235 0 0 chr12 20920936 20921089 -122865366 - AluJb SINE Alu -16 296 144 213 39 0 0 chr12 20921464 20921490 -122864965 + (CA)n Simple_repeat Simple_repeat 2 27 0 530 319 94 60 chr12 20922512 20923257 -122863198 - L3 LINE CR1 -28 1549 780 300 115 0 0 chr12 20923271 20923323 -122863132 - L1PA15 LINE L1 -3 6162 6111 195 291 36 0 chr12 20925258 20925313 -122861142 - L3 LINE CR1 -814 763 707 29 28 0 0 chr12 20925383 20925419 -122861036 + AT_rich Low_complexity Low_complexity 1 36 0 3479 125 45 96 chr12 20925733 20926485 -122859970 - LTR1 LTR ERV1 -56 729 16 2142 99 3 3 chr12 20926575 20926869 -122859586 + AluY SINE Alu 1 294 -17 622 268 175 25 chr12 20926873 20927258 -122859197 + L1ME3A LINE L1 2593 2919 -3227 2361 78 3 0 chr12 20927258 20927553 -122858902 + AluY SINE Alu 1 296 -15 622 268 175 25 chr12 20927553 20927617 -122858838 + L1ME3A LINE L1 2919 2972 -3174 2162 112 0 7 chr12 20927617 20927913 -122858542 + AluSg SINE Alu 1 294 -16 622 268 175 25 chr12 20927913 20928303 -122858152 + L1ME3A LINE L1 2972 3559 -2587 2297 282 125 23 chr12 20928311 20928650 -122857805 + L1ME3A LINE L1 3630 3933 -2237 1028 224 9 26 chr12 20928650 20928878 -122857577 - MER58A DNA MER1_type 0 224 1 2297 282 125 23 chr12 20928878 20929888 -122856567 + L1ME3A LINE L1 3933 4838 -1332 2191 109 0 3 chr12 20929888 20930220 -122856235 - AluSq SINE Alu 0 331 1 2297 282 125 23 chr12 20930220 20930935 -122855520 + L1ME3A LINE L1 4838 5905 -265 293 322 28 51 chr12 20931080 20931257 -122855198 + L1ME3A LINE L1 5988 6160 -10 1268 188 106 0 chr12 20933136 20933391 -122853064 + AluJo SINE Alu 1 282 -30 567 162 11 39 chr12 20933394 20933573 -122852882 + GA-rich Low_complexity Low_complexity 1 174 0 240 143 16 32 chr12 20933590 20933653 -122852802 + GA-rich Low_complexity Low_complexity 2 63 0 216 320 144 21 chr12 20935248 20935345 -122851110 + MIR SINE MIR 47 155 -107 294 193 20 3 chr12 20935554 20935751 -122850704 + AluJo SINE Alu 1 257 -45 306 0 0 0 chr12 20935769 20935803 -122850652 + (CA)n Simple_repeat Simple_repeat 1 34 0 632 290 94 9 chr12 20936574 20936798 -122849657 + MIR SINE MIR 7 249 -13 24 0 0 0 chr12 20936963 20936987 -122849468 + AT_rich Low_complexity Low_complexity 1 24 0 228 353 24 0 chr12 20936989 20937074 -122849381 - MLT1K LTR MaLR -340 248 162 804 270 189 27 chr12 20937153 20937671 -122848784 + L1MC4 LINE L1 7441 8042 0 734 63 0 0 chr12 20938308 20938403 -122848052 - AluS SINE Alu -217 95 1 376 258 21 0 chr12 20938512 20938609 -122847846 + MIR SINE MIR 52 150 -112 25 51 0 0 chr12 20938612 20938651 -122847804 + AT_rich Low_complexity Low_complexity 1 39 0 211 214 107 0 chr12 20938735 20938791 -122847664 - L2 LINE L2 -62 3210 3149 25 51 0 0 chr12 20939064 20939103 -122847352 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 20939768 20939789 -122846666 + AT_rich Low_complexity Low_complexity 1 21 0 1695 170 123 157 chr12 20939847 20940871 -122845584 - Charlie2 DNA MER1_type -4 2858 1870 563 286 103 42 chr12 20940899 20941161 -122845294 - Charlie2 DNA MER1_type -2504 278 1 301 353 20 20 chr12 20941163 20941316 -122845139 - L2 LINE L2 -556 2758 2606 660 295 106 34 chr12 20941413 20941735 -122844720 - L3 LINE CR1 -244 1333 989 2546 40 30 0 chr12 20941962 20942262 -122844193 - AluY SINE Alu -2 309 1 528 233 68 0 chr12 20943440 20943573 -122842882 + L1ME3 LINE L1 6014 6155 -7 432 257 79 40 chr12 20944322 20944474 -122841981 + MIR3 SINE MIR 13 170 -38 190 322 52 61 chr12 20948122 20948237 -122838218 - MER5A DNA MER1_type -29 160 47 2062 106 26 7 chr12 20948539 20948841 -122837614 - AluY SINE Alu -3 308 1 1559 175 0 15 chr12 20950514 20950782 -122835673 - AluJo SINE Alu -11 301 38 32 81 0 0 chr12 20950789 20950863 -122835592 + AT_rich Low_complexity Low_complexity 1 74 0 379 352 80 56 chr12 20951211 20951498 -122834957 + L2 LINE L2 2979 3272 0 494 265 26 8 chr12 20953020 20953254 -122833201 + L1ME LINE L1 4146 4383 -1763 * 4416 225 12 28 chr12 20953236 20954475 -122831980 + L1M4 LINE L1 2916 4134 -2012 1134 242 9 0 chr12 20954475 20954702 -122831753 - Charlie1a DNA MER1_type -1224 231 3 4484 185 84 27 chr12 20954709 20954959 -122831496 + L1MA8 LINE L1 4790 5024 -1267 1693 141 36 7 chr12 20954959 20955235 -122831220 + AluSq SINE Alu 21 304 -9 4484 185 84 27 chr12 20955235 20956226 -122830229 + L1MA8 LINE L1 5024 6117 -174 2220 105 6 25 chr12 20956226 20956541 -122829914 - AluSx SINE Alu -2 310 2 4484 185 84 27 chr12 20956541 20956726 -122829729 + L1MA8 LINE L1 6117 6290 -1 285 331 120 0 chr12 20957667 20957809 -122828646 + L1ME LINE L1 5420 5578 -2230 4429 82 21 6 chr12 20957838 20958461 -122827994 - L1PB1 LINE L1 0 6151 5520 2252 91 7 3 chr12 20958477 20958774 -122827681 + AluSx SINE Alu 1 298 -14 703 289 76 24 chr12 20958789 20959038 -122827417 - MIR SINE MIR 0 262 1 317 296 63 13 chr12 20959045 20959204 -122827251 + L1ME LINE L1 5598 5764 -357 760 289 108 44 chr12 20959314 20959768 -122826687 + LTR33 LTR ERVL 35 517 -4 210 333 0 0 chr12 20959979 20960048 -122826407 + MIR SINE MIR 146 214 -48 2112 137 0 0 chr12 20964869 20965162 -122821293 - AluSx SINE Alu -19 293 1 2327 93 13 0 chr12 20965400 20965700 -122820755 + AluSp SINE Alu 1 304 -9 610 238 130 27 chr12 20966194 20966417 -122820038 - MIR SINE MIR -10 252 7 303 93 0 0 chr12 20967235 20967278 -122819177 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 392 299 51 114 chr12 20967295 20967413 -122819042 + L1ME LINE L1 31 155 -5915 2520 53 0 3 chr12 20967413 20967717 -122818738 - AluY SINE Alu -8 303 1 392 299 51 114 chr12 20967717 20968009 -122818446 + L1ME LINE L1 155 415 -5655 731 172 8 0 chr12 20968022 20968144 -122818311 - FLAM_A SINE Alu -10 123 1 1003 365 90 24 chr12 20968371 20969242 -122817213 + L1ME LINE L1 556 1483 -4778 386 184 97 0 chr12 20969401 20969515 -122816940 + L1ME LINE L1 2793 2917 -3163 2218 199 39 18 chr12 20970251 20970744 -122815711 + MLT1D LTR MaLR 1 503 -2 456 279 16 66 chr12 20970758 20970941 -122815514 - MER5B DNA MER1_type -1 177 4 1352 256 83 23 chr12 20970972 20971444 -122815011 - MLT1D LTR MaLR 0 505 6 226 329 20 9 chr12 20972628 20972743 -122813712 + MER5A DNA MER1_type 14 119 -59 222 116 0 0 chr12 20972894 20972937 -122813518 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1290 33 0 0 chr12 20972937 20973089 -122813366 - L1PA3 LINE L1 -6 6149 5998 5915 75 1 0 chr12 20974755 20975566 -122810889 + L1PA8A LINE L1 5293 6104 -27 2083 114 37 0 chr12 20976381 20976680 -122809775 + AluSg SINE Alu 1 310 0 190 327 106 35 chr12 20978200 20978454 -122808001 - L2 LINE L2 -28 3285 3014 233 291 0 0 chr12 20978882 20978937 -122807518 + (TG)n Simple_repeat Simple_repeat 2 56 0 3047 201 11 5 chr12 20979765 20980377 -122806078 + MER82 DNA MER2_type 1 616 -37 237 234 68 41 chr12 20980430 20980558 -122805897 + MIR SINE MIR 17 152 -68 784 152 0 16 chr12 20981168 20981293 -122805162 - FLAM_A SINE Alu -10 123 1 2516 177 18 81 chr12 20983094 20983649 -122802806 - MLT2B1 LTR ERVL 0 520 1 210 290 0 58 chr12 20984036 20984105 -122802350 + MIR SINE MIR 49 113 -149 2293 98 14 0 chr12 20984208 20984504 -122801951 - AluSp SINE Alu -13 300 1 202 283 104 38 chr12 20984545 20984651 -122801804 - MIR3 SINE MIR -54 154 42 180 336 55 82 chr12 20984702 20984812 -122801643 - L2 LINE L2 -37 3235 3129 405 315 93 6 chr12 20984945 20985107 -122801348 + MIR SINE MIR 22 197 -65 414 216 0 0 chr12 20985126 20985214 -122801241 + MER94 DNA DNA 8 95 -39 333 344 104 0 chr12 20985421 20985575 -122800880 - MIR3 SINE MIR -1 207 38 198 300 150 17 chr12 20986443 20986563 -122799892 + L2 LINE L2 3133 3268 -4 260 118 0 20 chr12 20986938 20986989 -122799466 + (GA)n Simple_repeat Simple_repeat 2 51 0 2168 107 19 23 chr12 20987750 20988060 -122798395 - AluSx SINE Alu -3 309 1 2300 108 13 0 chr12 20988625 20988932 -122797523 - AluSp SINE Alu -2 311 1 247 230 0 27 chr12 20989269 20989343 -122797112 - MLT1K LTR MaLR 0 588 517 1569 213 32 15 chr12 20989586 20989994 -122796461 + MLT1C LTR MaLR 53 467 0 1384 55 6 6 chr12 20990693 20990874 -122795581 - L1PA6 LINE L1 -11 6143 5963 2618 52 23 0 chr12 20990874 20991219 -122795236 + L1PA6 LINE L1 5601 5953 -201 2985 126 133 61 chr12 20991278 20992000 -122794455 - LTR1 LTR ERV1 0 785 12 409 318 194 5 chr12 20992613 20992824 -122793631 + MIR SINE MIR 2 252 -10 2142 186 38 2 chr12 20993948 20993982 -122792473 - MLT2D LTR ERVL 0 414 383 318 67 0 0 chr12 20993982 20994027 -122792428 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 186 38 2 chr12 20994027 20994390 -122792065 - MLT2D LTR ERVL -31 383 3 23 0 0 0 chr12 20994492 20994515 -122791940 + AT_rich Low_complexity Low_complexity 1 23 0 5331 57 0 3 chr12 20995218 20995886 -122790569 + L1PA8 LINE L1 5505 6170 -2 505 197 45 15 chr12 20998111 20998243 -122788212 + L1 LINE L1 4255 4390 -1756 817 287 38 4 chr12 20998243 20998480 -122787975 + MIR SINE MIR 8 252 -10 260 328 30 30 chr12 20998716 20998914 -122787541 + L2 LINE L2 2456 2653 -661 268 83 42 0 chr12 20999156 20999204 -122787251 + L1MB3 LINE L1 6132 6181 -2 1703 211 45 31 chr12 20999399 21000026 -122786429 + MER52A LTR ERV1 1 800 -955 1744 131 12 0 chr12 21000193 21000445 -122786010 + AluJb SINE Alu 46 300 -12 239 178 0 0 chr12 21000598 21000643 -122785812 + MER96B DNA MER1_type? 192 236 -181 2441 97 0 0 chr12 21001426 21001726 -122784729 + AluSg SINE Alu 4 303 -7 442 211 73 9 chr12 21002032 21002141 -122784314 + MIR SINE MIR 147 262 0 1981 145 0 22 chr12 21002264 21002581 -122783874 - AluJb SINE Alu -2 310 1 2310 82 0 22 chr12 21002583 21002899 -122783556 - AluY SINE Alu -2 309 1 686 201 66 33 chr12 21003189 21003433 -122783022 + Charlie1 DNA MER1_type 2510 2761 0 301 314 29 20 chr12 21003620 21003722 -122782733 - MIR SINE MIR -51 211 109 1330 207 66 9 chr12 21004168 21004305 -122782150 - MLT1A1 LTR MaLR 0 365 237 496 125 0 0 chr12 21004305 21004385 -122782070 - MADE1 DNA Mariner 0 80 1 1330 207 66 9 chr12 21004385 21004580 -122781875 - MLT1A1 LTR MaLR -128 237 14 333 308 92 39 chr12 21006830 21006960 -122779495 - L2 LINE L2 0 3272 3136 216 0 0 0 chr12 21007081 21007105 -122779350 + (A)n Simple_repeat Simple_repeat 1 24 0 266 283 41 59 chr12 21007506 21007764 -122778691 + MLT1L LTR MaLR 1 318 -297 203 304 0 18 chr12 21010389 21010445 -122776010 - L2 LINE L2 -2 3311 3257 203 330 60 10 chr12 21010980 21011080 -122775375 - L2 LINE L2 0 3272 3168 830 209 16 27 chr12 21012500 21012687 -122773768 - MER5A DNA MER1_type -4 185 1 235 277 15 0 chr12 21012688 21012753 -122773702 + MER5B DNA MER1_type 111 176 -2 238 334 87 65 chr12 21013160 21013483 -122772972 - L2 LINE L2 -1857 1457 1128 3057 106 151 16 chr12 21013705 21014250 -122772205 + LTR35 LTR ERV1 1 618 0 383 121 0 0 chr12 21014439 21014497 -122771958 + LTR35 LTR ERV1 50 107 -511 24 53 0 0 chr12 21014641 21014679 -122771776 + AT_rich Low_complexity Low_complexity 1 38 0 204 276 79 64 chr12 21015627 21015830 -122770625 - L2 LINE L2 -99 3214 3009 372 303 61 23 chr12 21015910 21016042 -122770413 - L2 LINE L2 -614 2700 2564 214 109 22 65 chr12 21016989 21017005 -122769450 + GA-rich Low_complexity Low_complexity 3 18 -28 2280 114 0 0 chr12 21017005 21017313 -122769142 + AluSc SINE Alu 1 308 -1 214 109 22 65 chr12 21017313 21017342 -122769113 + GA-rich Low_complexity Low_complexity 18 46 0 3385 41 5 0 chr12 21018754 21019169 -122767286 + L1PA4 LINE L1 5735 6151 -4 275 181 0 12 chr12 21019376 21019459 -122766996 + (TA)n Simple_repeat Simple_repeat 2 83 0 435 327 122 19 chr12 21019588 21019964 -122766491 + L2 LINE L2 2331 2745 -569 232 86 29 0 chr12 21020402 21020437 -122766018 - L2 LINE L2 -9 3304 3269 22 0 0 0 chr12 21023469 21023491 -122762964 + AT_rich Low_complexity Low_complexity 1 22 0 1236 123 23 32 chr12 21024301 21024520 -122761935 + THE1C LTR MaLR 159 375 0 1403 272 80 67 chr12 21024565 21025516 -122760939 + HAL1 LINE L1 433 1395 -1112 2500 233 111 14 chr12 21025860 21026939 -122759516 + L1ME3 LINE L1 4972 6155 -7 647 200 97 24 chr12 21027718 21027883 -122758572 + MER5B DNA MER1_type 1 177 -1 1051 148 6 6 chr12 21028315 21028497 -122757958 + L1PB1 LINE L1 5957 6138 -13 610 242 70 23 chr12 21028762 21028977 -122757478 + MER110 LTR ERV1 246 470 -21 186 43 0 0 chr12 21029991 21030014 -122756441 + (TG)n Simple_repeat Simple_repeat 1 23 0 314 280 40 0 chr12 21030376 21030476 -122755979 + MIR SINE MIR 78 181 -81 257 425 12 12 chr12 21031537 21031697 -122754758 + L2 LINE L2 3103 3262 -10 692 210 35 142 chr12 21032012 21032386 -122754069 - MER33 DNA MER1_type -1 323 1 221 229 42 0 chr12 21033323 21033371 -122753084 - L2 LINE L2 -92 3221 3172 15945 78 7 1 chr12 21034227 21037216 -122749239 - L1PA7 LINE L1 0 6154 3177 209 250 96 77 chr12 21037585 21037689 -122748766 + L2 LINE L2 3208 3313 0 988 210 179 53 chr12 21037890 21038431 -122748024 + MLT1G LTR MaLR 2 573 -17 874 126 0 7 chr12 21038483 21038626 -122747829 - L1MB7 LINE L1 -16 6168 6027 267 260 0 14 chr12 21038893 21038966 -122747489 - MIR SINE MIR -21 241 170 2523 68 0 0 chr12 21039252 21039559 -122746896 + AluY SINE Alu 1 307 -4 265 235 25 0 chr12 21039707 21039788 -122746667 + (TA)n Simple_repeat Simple_repeat 1 83 0 192 152 0 0 chr12 21039876 21039909 -122746546 + A-rich Low_complexity Low_complexity 1 33 0 252 140 60 0 chr12 21040424 21040474 -122745981 - MER116 DNA Mariner -26 54 2 391 150 0 0 chr12 21040727 21040787 -122745668 - MLT1J LTR MaLR 0 511 452 1447 150 101 28 chr12 21040831 21041117 -122745338 + AluJo SINE Alu 1 307 -5 285 277 130 47 chr12 21041192 21041231 -122745224 + L1MC/D LINE L1 5543 5577 -2231 1839 191 82 3 chr12 21041231 21041623 -122744832 - MSTA LTR MaLR -3 425 3 285 277 130 47 chr12 21041623 21041836 -122744619 + L1MC/D LINE L1 5577 5816 -1992 21 82 0 0 chr12 21041848 21041897 -122744558 + AT_rich Low_complexity Low_complexity 1 49 0 21494 157 11 20 chr12 21041928 21046956 -122739499 + L1P3 LINE L1 2 5060 -1401 2434 93 0 0 chr12 21049533 21049844 -122736611 + AluSq SINE Alu 1 311 -2 291 394 0 30 chr12 21050308 21050440 -122736015 + MIR SINE MIR 16 143 -65 480 286 66 39 chr12 21050723 21050905 -122735550 + MIR SINE MIR 32 218 -44 361 90 30 0 chr12 21052060 21052127 -122734328 + (GA)n Simple_repeat Simple_repeat 2 70 0 216 351 13 0 chr12 21053375 21053452 -122733003 - L2 LINE L2 -4 3309 3232 * 599 326 133 0 chr12 21053447 21053711 -122732744 + L2 LINE L2 1406 1704 -1610 519 213 29 0 chr12 21053743 21053879 -122732576 - LTR37A LTR ERV1 0 426 287 3869 147 28 35 chr12 21053879 21054622 -122731833 + L1MB3 LINE L1 5444 6181 -2 4529 156 42 38 chr12 21054753 21055692 -122730763 - L1MA8 LINE L1 0 6291 5350 1033 216 34 8 chr12 21055701 21055937 -122730518 - LTR37A LTR ERV1 -177 249 8 239 143 0 0 chr12 21056023 21056058 -122730397 + MLT1H LTR MaLR 73 107 -442 2286 94 0 16 chr12 21056058 21056366 -122730089 + AluSg SINE Alu 1 303 -7 1317 249 71 56 chr12 21056382 21056831 -122729624 + MLT1H LTR MaLR 94 549 0 465 329 6 12 chr12 21056832 21056996 -122729459 + L2 LINE L2 2403 2565 -749 33 90 0 0 chr12 21057017 21057106 -122729349 + AT_rich Low_complexity Low_complexity 1 89 0 279 342 37 68 chr12 21057122 21057283 -122729172 + L2 LINE L2 3117 3272 0 819 97 0 0 chr12 21057325 21057439 -122729016 + MER85 DNA T2_type 1 114 -25 209 297 14 40 chr12 21057607 21057681 -122728774 + L2 LINE L2 3234 3305 -8 298 330 28 0 chr12 21058372 21058478 -122727977 + Charlie2 DNA MER1_type 29 137 -2645 1241 201 201 65 chr12 21058587 21059285 -122727170 + Charlie2 DNA MER1_type 1856 2648 -214 21 0 0 0 chr12 21060250 21060271 -122726184 + AT_rich Low_complexity Low_complexity 1 21 0 719 127 0 8 chr12 21060871 21060989 -122725466 - Ricksha DNA DNA -7 3247 3131 890 171 7 0 chr12 21061001 21061153 -122725302 - FRAM SINE Alu -16 160 8 8479 126 30 22 chr12 21061160 21062092 -122724363 - Ricksha DNA DNA -121 3125 2175 4424 86 147 57 chr12 21062092 21062848 -122723607 - LTR12 LTR ERV1 -2 824 1 8479 126 30 22 chr12 21062848 21063336 -122723119 - Ricksha DNA DNA -1071 2175 1693 755 186 5 5 chr12 21063338 21063531 -122722924 - Ricksha DNA DNA -969 285 1 874 130 0 0 chr12 21064913 21065036 -122721419 + THE1B LTR MaLR 1 123 -241 429 145 13 13 chr12 21065137 21065213 -122721242 + THE1B LTR MaLR 287 362 -2 534 282 11 23 chr12 21066430 21066604 -122719851 + MER91B DNA MER1_type 4 175 -15 213 286 86 36 chr12 21066634 21066774 -122719681 + MIR SINE MIR 56 202 -60 296 172 31 16 chr12 21067357 21067421 -122719034 + MLT1K LTR MaLR 189 253 -335 405 0 0 0 chr12 21067856 21067901 -122718554 + (CA)n Simple_repeat Simple_repeat 2 46 0 2178 84 19 10 chr12 21067955 21068263 -122718192 - AluY SINE Alu 0 311 1 246 207 35 0 chr12 21070525 21070583 -122715872 + GA-rich Low_complexity Low_complexity 2 61 0 252 0 0 0 chr12 21070730 21070758 -122715697 + (T)n Simple_repeat Simple_repeat 1 28 0 2181 107 0 0 chr12 21071059 21071366 -122715089 + AluSx SINE Alu 5 311 0 389 113 28 0 chr12 21071834 21071905 -122714550 + MLT1D LTR MaLR 433 505 0 1105 169 73 119 chr12 21071924 21072268 -122714187 - MLT1D LTR MaLR -177 328 1 313 256 80 0 chr12 21072278 21072403 -122714052 + L1M4 LINE L1 2302 2436 -3710 2442 63 0 0 chr12 21072799 21073086 -122713369 - AluY SINE Alu -24 287 1 181 359 0 0 chr12 21073602 21073655 -122712800 + L2 LINE L2 3207 3259 -13 1592 167 35 37 chr12 21073663 21074014 -122712441 + MLT1B LTR MaLR 1 465 -2 186 43 0 0 chr12 21074088 21074111 -122712344 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 25 90 0 0 chr12 21074714 21074781 -122711674 + AT_rich Low_complexity Low_complexity 1 67 0 2139 100 27 0 chr12 21074835 21075134 -122711321 - AluSq SINE Alu -6 307 1 1421 195 3 30 chr12 21075157 21075455 -122711000 - AluJo SINE Alu -12 290 1 399 154 77 0 chr12 21075497 21075588 -122710867 - L1MA8 LINE L1 0 6291 6194 283 157 0 0 chr12 21076368 21076419 -122710036 - L1MB4 LINE L1 0 6180 6130 74 32 0 0 chr12 21077617 21077712 -122708743 + AT_rich Low_complexity Low_complexity 1 95 0 1014 167 4 94 chr12 21077860 21078094 -122708361 + AluJb SINE Alu 86 298 -14 194 233 151 0 chr12 21078554 21078627 -122707828 - L2 LINE L2 0 3272 3189 191 356 59 17 chr12 21078644 21078762 -122707693 - MIR SINE MIR -21 241 119 352 281 54 84 chr12 21078922 21079125 -122707330 + MIR SINE MIR 2 198 -64 325 310 30 20 chr12 21079120 21079220 -122707235 + MIR SINE MIR 12 112 -150 * 946 193 190 49 chr12 21079293 21079640 -122706815 + MSTD LTR MaLR 1 396 0 24 0 0 0 chr12 21079640 21079664 -122706791 + AT_rich Low_complexity Low_complexity 1 24 0 600 224 83 75 chr12 21079669 21079815 -122706640 + LTR9 LTR ERV1 299 449 -163 1898 171 3 0 chr12 21079815 21080136 -122706319 - AluSx SINE Alu 0 312 1 600 224 83 75 chr12 21080136 21080217 -122706238 + LTR9 LTR ERV1 449 528 -84 219 363 78 0 chr12 21080410 21080512 -122705943 + L2 LINE L2 2595 2704 -610 967 119 16 52 chr12 21080994 21081188 -122705267 + L1MA8 LINE L1 6083 6269 -22 469 0 16 16 chr12 21081188 21081250 -122705205 + (TG)n Simple_repeat Simple_repeat 1 62 0 643 77 0 0 chr12 21081297 21081388 -122705067 - L1PA3 LINE L1 0 6155 6065 23 33 0 0 chr12 21081389 21081419 -122705036 + AT_rich Low_complexity Low_complexity 1 30 0 1030 284 134 30 chr12 21081517 21081979 -122704476 - LTR33 LTR ERVL -10 511 2 247 303 67 73 chr12 21082237 21082402 -122704053 + L2 LINE L2 3150 3313 0 272 87 58 101 chr12 21082536 21082605 -122703850 - FLAM SINE Alu 0 133 69 2116 115 7 3 chr12 21084065 21084361 -122702094 + AluSq SINE Alu 1 297 -16 2434 68 3 10 chr12 21085465 21085773 -122700682 + AluY SINE Alu 1 306 -5 646 344 208 25 chr12 21086672 21087954 -122698501 - L3 LINE CR1 -1 1576 60 1789 146 0 52 chr12 21088094 21088402 -122698053 - AluJo SINE Alu -17 295 4 883 259 64 12 chr12 21088994 21089245 -122697210 + LTR50 LTR ERVL 388 651 -144 643 199 37 12 chr12 21089986 21090147 -122696308 - Charlie1a DNA MER1_type 0 1455 1291 3219 235 51 10 chr12 21090289 21091114 -122695341 - Charlie1a DNA MER1_type -596 859 1 207 0 0 0 chr12 21092591 21092614 -122693841 + (A)n Simple_repeat Simple_repeat 1 23 0 286 228 196 43 chr12 21093708 21093800 -122692655 - MER5B DNA MER1_type -52 126 21 872 178 89 0 chr12 21093814 21093983 -122692472 + MER5A DNA MER1_type 6 189 0 620 209 150 7 chr12 21094031 21094184 -122692271 - MER8 DNA MER2_type 0 239 65 428 302 75 6 chr12 21094617 21094776 -122691679 - MIR SINE MIR -30 232 63 285 313 76 21 chr12 21095981 21096125 -122690330 + MIR SINE MIR 47 198 -64 1745 79 32 0 chr12 21147469 21147722 -122638733 - L1MA2 LINE L1 0 6304 6044 184 381 16 24 chr12 21147744 21147870 -122638585 - MIR SINE MIR -65 143 19 2384 45 0 36 chr12 21148191 21148499 -122637956 + AluY SINE Alu 1 297 -14 210 365 0 35 chr12 21148757 21148842 -122637613 + L2 LINE L2 3191 3272 0 435 207 97 62 chr12 21149001 21149146 -122637309 + MIR SINE MIR 57 206 -56 21 36 0 0 chr12 21149680 21149708 -122636747 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 21149820 21149841 -122636614 + AT_rich Low_complexity Low_complexity 1 21 0 188 323 68 30 chr12 21150417 21150550 -122635905 + MIR SINE MIR 75 212 -50 189 0 0 0 chr12 21151105 21151126 -122635329 + (A)n Simple_repeat Simple_repeat 1 21 0 468 276 92 27 chr12 21151711 21151896 -122634559 + MIR SINE MIR 47 243 -19 1403 247 42 9 chr12 21152157 21152489 -122633966 - MLT1A2 LTR MaLR 0 374 32 287 139 70 0 chr12 21152489 21152551 -122633904 - MLT1A1 LTR MaLR -289 76 1 225 183 0 0 chr12 21153088 21153148 -122633307 + (TA)n Simple_repeat Simple_repeat 2 61 0 222 37 0 0 chr12 21153148 21153175 -122633280 + (GA)n Simple_repeat Simple_repeat 2 28 0 236 399 6 12 chr12 21153986 21154149 -122632306 + L2 LINE L2 2692 2853 -461 2394 67 6 22 chr12 21154226 21154541 -122631914 - AluY SINE Alu -1 310 1 256 354 50 0 chr12 21155451 21155550 -122630905 + L2 LINE L2 3160 3263 -9 291 309 66 31 chr12 21155553 21155754 -122630701 - MIR SINE MIR -41 221 16 213 121 0 0 chr12 21155754 21155787 -122630668 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 203 433 28 11 chr12 21155967 21156147 -122630308 - L2 LINE L2 -214 3058 2876 5361 256 39 19 chr12 21156255 21160529 -122625926 - L1 LINE L1 -2958 4209 3 288 229 51 8 chr12 21160597 21160715 -122625740 - L1M4 LINE L1 -1031 5115 4993 512 347 129 27 chr12 21160957 21161579 -122624876 + L3 LINE CR1 187 871 -706 290 295 78 93 chr12 21162056 21162249 -122624206 - L2 LINE L2 0 3313 3124 3825 35 29 2 chr12 21162343 21162822 -122623633 + L1PA3 LINE L1 5664 6155 0 28 48 0 0 chr12 21163117 21163159 -122623296 + AT_rich Low_complexity Low_complexity 1 42 0 420 185 0 0 chr12 21163236 21163301 -122623154 + L1MCa LINE L1 460 524 -5902 1130 270 89 65 chr12 21163321 21163813 -122622642 - MLT1E LTR MaLR 0 593 90 7043 173 81 10 chr12 21163814 21165255 -122621200 + L1MC1 LINE L1 34 1577 -4849 14602 227 38 30 chr12 21165296 21170889 -122615566 + L1PA15 LINE L1 7 6158 -658 1243 155 0 5 chr12 21170989 21171196 -122615259 + L1PA15 LINE L1 6609 6814 -2 1780 201 56 21 chr12 21171197 21172071 -122614384 + L1MC1 LINE L1 1701 2734 -3873 4380 160 54 12 chr12 21172085 21173488 -122612967 + L1MA7 LINE L1 4707 6280 -11 2670 227 36 87 chr12 21173518 21174708 -122611747 + L1MC1 LINE L1 2599 3727 -2699 12084 140 26 11 chr12 21174708 21176444 -122610011 - Tigger1 DNA MER2_type 0 2418 647 2186 169 52 5 chr12 21176444 21176847 -122609608 + MSTB LTR MaLR 1 422 -4 12084 140 26 11 chr12 21176847 21177109 -122609346 - Tigger1 DNA MER2_type -1771 647 390 3387 210 32 33 chr12 21177109 21177214 -122609241 + L1MC1 LINE L1 3964 4068 -2358 1533 124 151 112 chr12 21177214 21177626 -122608829 + MSTA LTR MaLR 1 428 0 3387 210 32 33 chr12 21177626 21178111 -122608344 + L1MC1 LINE L1 4068 4555 -1871 2227 108 51 17 chr12 21178111 21178463 -122607992 - THE1B LTR MaLR 0 364 1 3387 210 32 33 chr12 21178463 21178768 -122607687 + L1MC1 LINE L1 4555 4859 -1567 * 5708 192 19 15 chr12 21178766 21180239 -122606216 + L1MC1 LINE L1 5133 6613 0 454 243 301 12 chr12 21180558 21180731 -122605724 - MIR SINE MIR -28 234 12 215 296 52 22 chr12 21180779 21180914 -122605541 + L2 LINE L2 1914 2052 -1262 409 280 107 7 chr12 21181157 21181307 -122605148 - L2 LINE L2 -10 3303 3139 2164 163 5 25 chr12 21183973 21184371 -122602084 + MLT1B LTR MaLR 1 390 0 703 65 0 40 chr12 21184493 21184617 -122601838 + (TA)n Simple_repeat Simple_repeat 2 120 0 328 259 0 9 chr12 21184645 21184753 -122601702 - L1ME LINE L1 -304 5817 5711 190 349 0 16 chr12 21184755 21184818 -122601637 + MIR SINE MIR 47 108 -154 316 229 115 61 chr12 21186148 21186303 -122600152 - HAL1b LINE L1 -3 6118 1187 344 211 116 0 chr12 21186371 21186466 -122599989 + MIR SINE MIR 156 261 -1 21 36 0 0 chr12 21186732 21186760 -122599695 + AT_rich Low_complexity Low_complexity 1 28 0 356 286 53 8 chr12 21186876 21187009 -122599446 - MIR SINE MIR -2 260 122 2218 251 98 33 chr12 21187034 21187731 -122598724 + L1MB8 LINE L1 21 762 -6097 * 4690 189 44 20 chr12 21187727 21189043 -122597412 + L1MB8 LINE L1 5160 6528 -461 429 20 0 0 chr12 21189043 21189093 -122597362 + (CA)n Simple_repeat Simple_repeat 2 51 0 4690 189 44 20 chr12 21189093 21189534 -122596921 + L1MB8 LINE L1 6528 6957 -32 1768 168 50 25 chr12 21189535 21189893 -122596562 + MLT2D LTR ERVL 5 371 -43 280 93 19 19 chr12 21189896 21189950 -122596505 + (TA)n Simple_repeat Simple_repeat 1 54 0 260 126 89 0 chr12 21189959 21190011 -122596444 + MLT2C2 LTR ERVL 417 464 0 185 270 27 27 chr12 21190038 21190112 -122596343 - MIR SINE MIR -123 139 66 22 0 0 0 chr12 21190594 21190616 -122595839 + AT_rich Low_complexity Low_complexity 1 22 0 192 402 68 24 chr12 21192671 21192967 -122593488 - L3 LINE CR1 -81 1496 1188 22 35 0 0 chr12 21192970 21192999 -122593456 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 21193012 21193044 -122593411 + AT_rich Low_complexity Low_complexity 1 32 0 301 237 118 0 chr12 21195533 21195626 -122590829 + MIR SINE MIR 118 221 -41 21 0 0 0 chr12 21196486 21196507 -122589948 + AT_rich Low_complexity Low_complexity 1 21 0 288 242 0 0 chr12 21196976 21197071 -122589384 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 27 49 0 0 chr12 21197411 21197452 -122589003 + AT_rich Low_complexity Low_complexity 1 41 0 259 328 144 29 chr12 21197545 21197719 -122588736 - MIR SINE MIR -46 216 23 2089 104 0 14 chr12 21197958 21198281 -122588174 - AluSx SINE Alu 0 319 1 2089 117 3 0 chr12 21198313 21198596 -122587859 - AluSp SINE Alu -8 305 22 227 349 48 24 chr12 21198648 21198731 -122587724 - L2 LINE L2 -49 3223 3139 22 94 0 0 chr12 21199331 21199395 -122587060 + AT_rich Low_complexity Low_complexity 1 64 0 231 36 0 0 chr12 21200577 21200605 -122585850 + (CA)n Simple_repeat Simple_repeat 2 29 0 332 336 48 0 chr12 21201204 21201350 -122585105 + L1M3e LINE L1 299 451 -6579 232 291 63 16 chr12 21201363 21201490 -122584965 - L1MCc LINE L1 -6268 155 23 357 207 0 69 chr12 21201501 21201617 -122584838 - L1ME LINE L1 -301 5820 5713 1327 125 5 0 chr12 21201644 21201836 -122584619 - MSTB1 LTR MaLR -13 419 227 755 125 0 0 chr12 21201857 21201969 -122584486 - MSTB1 LTR MaLR -320 112 1 486 180 0 23 chr12 21202355 21202483 -122583972 + CT-rich Low_complexity Low_complexity 3 127 0 2159 93 10 0 chr12 21202516 21202807 -122583648 + AluSx SINE Alu 1 294 -18 231 265 0 0 chr12 21203742 21203791 -122582664 - L3 LINE CR1 -19 1558 1510 2373 198 2 2 chr12 21204839 21205299 -122581156 - L1P LINE L1 -1217 4929 4470 948 249 85 14 chr12 21205448 21205802 -122580653 - LTR37A LTR ERV1 0 426 48 1921 240 67 52 chr12 21205810 21206427 -122580028 + MLT1E2 LTR MaLR 1 626 0 1869 103 56 56 chr12 21207707 21208009 -122578446 + AluSx SINE Alu 1 302 -10 348 137 50 35 chr12 21208293 21208578 -122577877 + (TA)n Simple_repeat Simple_repeat 1 289 0 1170 155 27 133 chr12 21208680 21209047 -122577408 + MLT1A1 LTR MaLR 38 365 0 227 255 0 0 chr12 21209523 21209574 -122576881 + CT-rich Low_complexity Low_complexity 2 52 0 334 333 75 33 chr12 21210298 21210538 -122575917 + L2 LINE L2 2344 2593 -721 352 272 80 16 chr12 21210599 21210724 -122575731 + MIR SINE MIR 105 237 -25 2299 85 3 0 chr12 21210936 21211229 -122575226 - AluSp SINE Alu -16 297 4 212 226 16 57 chr12 21212184 21212308 -122574147 + (TTTA)n Simple_repeat Simple_repeat 4 122 0 606 180 8 23 chr12 21212316 21212444 -122574011 - FLAM_A SINE Alu -6 136 11 260 150 0 0 chr12 21213207 21213247 -122573208 + L2 LINE L2 3226 3265 -7 218 171 0 0 chr12 21213286 21213321 -122573134 + (CA)n Simple_repeat Simple_repeat 2 36 0 363 333 16 8 chr12 21213741 21213867 -122572588 - MIR SINE MIR -113 149 23 1918 100 3 60 chr12 21213987 21214331 -122572124 + AluSx SINE Alu 1 327 0 422 320 59 106 chr12 21215622 21216215 -122570240 + L2 LINE L2 2358 2919 -353 1197 106 5 25 chr12 21216215 21216414 -122570041 + MER107 DNA MER1_type 3 197 0 422 320 59 106 chr12 21216414 21216697 -122569758 + L2 LINE L2 2919 3214 -58 240 324 27 54 chr12 21219015 21219163 -122567292 - L2 LINE L2 -459 2855 2712 295 244 0 122 chr12 21220438 21220553 -122565902 + MER5A DNA MER1_type 9 109 -80 180 238 148 30 chr12 21221483 21221584 -122564871 - L2 LINE L2 -1 3312 3200 1951 132 24 3 chr12 21221585 21221873 -122564582 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 21222204 21222228 -122564227 + AT_rich Low_complexity Low_complexity 1 24 0 2534 46 0 3 chr12 21222626 21222928 -122563527 - AluY SINE Alu -10 301 1 233 365 21 36 chr12 21224006 21224198 -122562257 + L2 LINE L2 2658 2846 -468 236 407 106 21 chr12 21224634 21224870 -122561585 - L2 LINE L2 -1 3271 3016 23 33 0 0 chr12 21226034 21226064 -122560391 + AT_rich Low_complexity Low_complexity 1 30 0 5472 164 27 26 chr12 21226270 21226787 -122559668 + L1MC2 LINE L1 5186 5701 -643 2136 75 7 4 chr12 21226787 21227067 -122559388 - AluSc SINE Alu -28 281 1 5472 164 27 26 chr12 21227067 21227299 -122559156 + L1MC2 LINE L1 5701 5931 -413 1902 208 5 37 chr12 21227299 21227708 -122558747 + MSTD LTR MaLR 1 396 0 5472 164 27 26 chr12 21227708 21228106 -122558349 + L1MC2 LINE L1 5931 6336 -8 22 70 0 0 chr12 21228418 21228461 -122557994 + AT_rich Low_complexity Low_complexity 1 43 0 603 33 11 22 chr12 21230244 21230336 -122556119 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 1063 266 67 36 chr12 21230339 21230760 -122555695 + L1MC4a LINE L1 5450 5883 -1925 20627 169 28 25 chr12 21230800 21233217 -122553238 - L1 LINE L1 -2018 5547 3140 1176 54 0 0 chr12 21233217 21233365 -122553090 - L1PA4 LINE L1 -3 6152 6005 20627 169 28 25 chr12 21233365 21236331 -122550124 - L1 LINE L1 -4425 3140 13 306 0 0 0 chr12 21236732 21236766 -122549689 + (TG)n Simple_repeat Simple_repeat 2 35 0 454 244 30 61 chr12 21236838 21236969 -122549486 + L2 LINE L2 3187 3313 0 34 24 0 0 chr12 21238019 21238060 -122548395 + AT_rich Low_complexity Low_complexity 1 41 0 644 270 22 22 chr12 21239330 21239508 -122546947 - MER5B DNA MER1_type 0 178 1 1172 190 20 92 chr12 21239531 21239836 -122546619 - L1M1 LINE L1 -7266 299 17 342 67 0 0 chr12 21240159 21240204 -122546251 + (TG)n Simple_repeat Simple_repeat 2 46 0 2277 107 10 0 chr12 21240393 21240701 -122545754 + AluSp SINE Alu 1 311 -2 788 164 14 14 chr12 21240848 21240988 -122545467 + LTR40a LTR ERVL 371 510 -9 305 221 0 107 chr12 21241839 21241961 -122544494 + MER31-int LTR ERV1 3394 3502 -1434 265 311 47 34 chr12 21242296 21242444 -122544011 + MER31-int LTR ERV1 3841 3990 -946 376 157 124 11 chr12 21242687 21242776 -122543679 + LTR37B LTR ERV1 64 162 -306 351 261 128 15 chr12 21242911 21243114 -122543341 + LTR37B LTR ERV1 243 468 0 5428 51 14 9 chr12 21243360 21244052 -122542403 + L1PA7 LINE L1 5402 6097 -57 582 83 0 0 chr12 21244089 21244173 -122542282 + L1PA7 LINE L1 6070 6153 -1 37 0 0 0 chr12 21244425 21244462 -122541993 + AT_rich Low_complexity Low_complexity 1 37 0 210 147 0 0 chr12 21244706 21244740 -122541715 + (TG)n Simple_repeat Simple_repeat 1 34 0 2383 139 8 5 chr12 21244740 21245114 -122541341 - THE1C LTR MaLR 0 375 1 9093 127 56 36 chr12 21245119 21246663 -122539792 - THE1C-int LTR MaLR -6 1574 1 2555 125 3 8 chr12 21246663 21247040 -122539415 - THE1C LTR MaLR 0 375 1 15739 145 36 12 chr12 21247624 21249985 -122536470 - Tigger4(Zombi) DNA MER2_type 0 2731 298 2350 173 26 17 chr12 21249985 21250407 -122536048 + MSTB LTR MaLR 1 426 0 15739 145 36 12 chr12 21250407 21250713 -122535742 - Tigger4(Zombi) DNA MER2_type -2433 298 1 928 192 0 0 chr12 21250778 21250950 -122535505 - AluJb SINE Alu 0 305 134 23 54 0 0 chr12 21251139 21251176 -122535279 + AT_rich Low_complexity Low_complexity 1 37 0 2156 133 32 3 chr12 21251191 21251536 -122534919 + THE1A LTR MaLR 1 355 0 11350 95 16 1 chr12 21251536 21253092 -122533363 + THE1A-int LTR MaLR 1 1580 0 2264 114 14 6 chr12 21253092 21253444 -122533011 + THE1A LTR MaLR 1 355 0 501 238 87 101 chr12 21253955 21254312 -122532143 - MLT2C1 LTR ERVL -1 396 45 * 596 227 13 32 chr12 21254173 21254327 -122532128 - MLT1E3 LTR MaLR -423 201 51 413 252 99 0 chr12 21254331 21254462 -122531993 - MLT2F LTR ERVL -519 144 1 4723 183 68 15 chr12 21254761 21255778 -122530677 - L1MC1 LINE L1 0 6333 5263 2498 69 0 0 chr12 21255802 21256107 -122530348 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 21256143 21256164 -122530291 + AT_rich Low_complexity Low_complexity 1 21 0 1491 213 10 17 chr12 21256164 21256465 -122529990 - AluJo SINE Alu -13 299 1 25 0 0 0 chr12 21256606 21256631 -122529824 + AT_rich Low_complexity Low_complexity 1 25 0 1415 355 52 30 chr12 21257198 21258185 -122528270 + HERV16 LTR ERVL 3 1010 -3986 7122 168 42 8 chr12 21258247 21260547 -122525908 - L1MA4 LINE L1 -7 6475 4102 4639 223 33 33 chr12 21260540 21262053 -122524402 - L1MA4 LINE L1 -3841 2487 974 * 2357 150 57 8 chr12 21262053 21262454 -122524001 - MSTA LTR MaLR 0 428 8 5667 162 13 17 chr12 21262469 21263452 -122523003 - L1MA4 LINE L1 -4349 979 1 1176 218 33 64 chr12 21263455 21263785 -122522670 - MLT1A1 LTR MaLR -45 320 1 634 320 79 67 chr12 21264174 21264805 -122521650 + HERV16 LTR ERVL 1321 1959 -3037 1523 332 187 26 chr12 21265341 21265398 -122521057 + L2 LINE L2 1806 1852 -1461 2227 126 70 34 chr12 21265398 21265811 -122520644 - MSTA LTR MaLR 0 428 1 1523 332 187 26 chr12 21265811 21267040 -122519415 + L2 LINE L2 1852 3312 -1 221 314 8 51 chr12 21267495 21267613 -122518842 + MIR SINE MIR 86 198 -64 225 263 0 18 chr12 21267695 21267752 -122518703 + MIR SINE MIR 21 76 -186 242 121 0 0 chr12 21267927 21267960 -122518495 + MIR SINE MIR 114 146 -116 223 211 0 0 chr12 21267931 21267969 -122518486 + MIR3 SINE MIR 119 156 -52 * 26 0 0 0 chr12 21270266 21270292 -122516163 + AT_rich Low_complexity Low_complexity 1 26 0 388 338 27 27 chr12 21270396 21270615 -122515840 + L2 LINE L2 1599 1817 -1497 402 378 50 8 chr12 21270869 21271131 -122515324 - MLT1K LTR MaLR -165 423 151 276 336 56 8 chr12 21271278 21271403 -122515052 - MIR SINE MIR -130 132 2 563 165 21 0 chr12 21271432 21271529 -122514926 + AluJ/FLAM SINE Alu 2 100 -212 393 182 10 125 chr12 21271630 21271822 -122514633 + FAM SINE Alu 4 173 -2 201 184 0 41 chr12 21272295 21272344 -122514111 + L2 LINE L2 3267 3313 0 236 120 20 0 chr12 21272458 21272508 -122513947 + (CAGGA)n Simple_repeat Simple_repeat 5 55 0 508 180 5 53 chr12 21272515 21272704 -122513751 + G-rich Low_complexity Low_complexity 1 180 0 2967 165 88 2 chr12 21272775 21273297 -122513158 - HUERS-P2 LTR ERV1 -1487 1601 1035 1692 163 3 10 chr12 21273480 21273774 -122512681 - AluJb SINE Alu -12 300 9 187 157 39 0 chr12 21274513 21274564 -122511891 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 189 0 0 0 chr12 21274701 21274722 -122511733 + (GA)n Simple_repeat Simple_repeat 2 22 0 26 74 0 0 chr12 21276086 21276140 -122510315 + AT_rich Low_complexity Low_complexity 1 54 0 2484 199 47 34 chr12 21277584 21278238 -122508217 + L1ME1 LINE L1 4504 5166 -980 6292 225 21 24 chr12 21278250 21280975 -122505480 + L1PB3 LINE L1 4 1776 -5087 1280 117 11 5 chr12 21280999 21281187 -122505268 + AluSg/x SINE Alu 118 306 -6 12774 218 38 11 chr12 21281189 21282281 -122504174 + L1PB3 LINE L1 1791 2852 -4018 2271 83 3 10 chr12 21282281 21282414 -122504041 + AluY SINE Alu 1 133 -178 2338 94 13 0 chr12 21282414 21282722 -122503733 + AluSp SINE Alu 1 312 -1 2271 83 3 10 chr12 21282722 21282888 -122503567 + AluY SINE Alu 133 298 -13 12774 218 38 11 chr12 21282888 21286675 -122499780 + L1PB3 LINE L1 2852 6866 -4 1550 202 75 76 chr12 21286685 21286925 -122499530 + L1ME1 LINE L1 5152 5391 -775 1596 245 21 43 chr12 21286925 21287439 -122499016 + MLT1D LTR MaLR 3 505 0 1550 202 75 76 chr12 21287439 21287898 -122498557 + L1ME1 LINE L1 5391 5883 -283 358 42 21 0 chr12 21288835 21288883 -122497572 - MADE1 DNA Mariner -30 50 2 26 0 0 0 chr12 21290104 21290130 -122496325 + AT_rich Low_complexity Low_complexity 1 26 0 2103 115 6 22 chr12 21290239 21290552 -122495903 + AluSg SINE Alu 1 308 -2 229 320 100 31 chr12 21290631 21291021 -122495434 + L1ME LINE L1 5385 5801 -320 212 400 91 9 chr12 21291715 21291945 -122494510 + L2 LINE L2 111 359 -2955 730 308 116 11 chr12 21291970 21292350 -122494105 + LTR16A LTR ERVL 26 445 -5 631 285 45 0 chr12 21292356 21292535 -122493920 + HERV16 LTR ERVL 2 188 -4808 602 330 114 13 chr12 21292688 21293073 -122493382 + LTR16A LTR ERVL 1 424 -26 1426 170 49 59 chr12 21293963 21294269 -122492186 - AluJo SINE Alu -9 303 1 212 303 0 40 chr12 21294661 21294737 -122491718 - L2 LINE L2 -1834 1480 1408 2014 116 0 0 chr12 21295749 21296017 -122490438 - AluSx SINE Alu -8 304 37 229 346 89 34 chr12 21296441 21296620 -122489835 - L3 LINE CR1 -701 876 688 393 218 202 32 chr12 21297800 21297988 -122488467 - MIR SINE MIR -6 256 37 22 35 0 0 chr12 21298567 21298596 -122487859 + AT_rich Low_complexity Low_complexity 1 29 0 275 348 78 33 chr12 21299245 21299515 -122486940 - L2 LINE L2 -2482 832 551 384 364 18 12 chr12 21300336 21300501 -122485954 + MIR3 SINE MIR 15 180 -28 268 310 54 16 chr12 21300759 21300888 -122485567 - ERVL LTR ERVL -2046 3718 3585 477 226 31 92 chr12 21300947 21301114 -122485341 - MER112 DNA MER1_type -14 246 97 1681 165 7 37 chr12 21301114 21301434 -122485021 + AluSx SINE Alu 1 311 0 477 226 31 92 chr12 21301434 21301525 -122484930 - MER112 DNA MER1_type -163 97 2 946 341 40 17 chr12 21301527 21301696 -122484759 - ERVL LTR ERVL -2271 3493 3329 1520 50 0 0 chr12 21301696 21301878 -122484577 + AluY SINE Alu 119 300 -11 946 341 40 17 chr12 21301878 21302183 -122484272 - ERVL LTR ERVL -2435 3329 3008 741 276 45 39 chr12 21303135 21303561 -122482894 + L1MEc LINE L1 950 1476 -1014 2247 94 7 0 chr12 21303561 21303858 -122482597 + AluSq SINE Alu 1 299 -14 741 276 45 39 chr12 21303858 21304159 -122482296 + L1MEc LINE L1 1476 1774 -716 890 271 23 55 chr12 21304374 21304684 -122481771 - HsTC2c DNA Tc2 -3 726 427 647 287 116 39 chr12 21304688 21305965 -122480490 + L1MEc LINE L1 2378 3752 -2377 940 299 84 44 chr12 21305969 21307792 -122478663 + L1MEc LINE L1 4038 5934 -219 198 0 0 0 chr12 21308368 21308390 -122478065 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2618 45 3 0 chr12 21308404 21308713 -122477742 + AluY SINE Alu 1 310 -1 553 163 0 0 chr12 21308720 21308806 -122477649 - FRAM SINE Alu -57 119 34 758 158 0 8 chr12 21309059 21309192 -122477263 + FLAM_A SINE Alu 11 142 0 403 254 8 40 chr12 21309286 21309412 -122477043 + FLAM_A SINE Alu 13 134 -8 21 0 0 0 chr12 21309501 21309522 -122476933 + AT_rich Low_complexity Low_complexity 1 21 0 1829 187 6 8 chr12 21309989 21310347 -122476108 + L1MB3 LINE L1 5825 6181 -2 205 294 0 0 chr12 21310645 21310696 -122475759 + L3 LINE CR1 1077 1127 -450 233 214 36 0 chr12 21310709 21310765 -122475690 + HsTC2 DNA Tc2 29 86 -1812 211 294 64 19 chr12 21311293 21311503 -122474952 + L3 LINE CR1 1117 1390 -187 204 396 43 14 chr12 21311736 21311875 -122474580 + L3 LINE CR1 1428 1570 -7 1998 132 10 13 chr12 21313253 21313563 -122472892 + AluSg SINE Alu 1 309 -1 23 33 0 0 chr12 21313730 21313760 -122472695 + AT_rich Low_complexity Low_complexity 1 30 0 410 297 63 17 chr12 21314152 21314327 -122472128 - MIR SINE MIR -6 256 74 4914 168 71 31 chr12 21314417 21315891 -122470564 + L1MA9 LINE L1 4792 6312 0 198 0 0 0 chr12 21316623 21316645 -122469810 + (A)n Simple_repeat Simple_repeat 1 22 0 193 256 0 0 chr12 21316970 21317009 -122469446 - L2 LINE L2 -83 3230 3192 185 132 26 0 chr12 21317588 21317626 -122468829 + (TA)n Simple_repeat Simple_repeat 2 40 0 1920 119 44 7 chr12 21319023 21319316 -122467139 + AluSx SINE Alu 1 304 -8 251 369 5 56 chr12 21320244 21320439 -122466016 - L2 LINE L2 -665 2649 2465 309 275 221 0 chr12 21320447 21320596 -122465859 + MIR SINE MIR 37 218 -44 2383 62 0 37 chr12 21320756 21321077 -122465378 + AluY SINE Alu 3 311 0 2905 152 18 2 chr12 21322174 21322668 -122463787 + L1MB3 LINE L1 5682 6183 0 348 246 82 16 chr12 21323863 21323985 -122462470 + MIR SINE MIR 109 238 -24 * 390 278 110 48 chr12 21323978 21324187 -122462268 - MIR SINE MIR -3 259 38 195 339 0 0 chr12 21324200 21324256 -122462199 - L3 LINE CR1 -463 1114 1059 493 307 58 70 chr12 21324308 21324637 -122461818 - L3 LINE CR1 -641 936 612 720 253 0 35 chr12 21325034 21325204 -122461251 + FRAM SINE Alu 1 164 -2 461 122 21 64 chr12 21325446 21325634 -122460821 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 266 229 0 chr12 21325783 21325892 -122460563 - MIR SINE MIR 0 262 129 683 239 122 32 chr12 21326004 21326192 -122460263 - MER20 DNA MER1_type -14 205 1 4054 130 47 14 chr12 21327305 21327444 -122459011 - L1MA4 LINE L1 -5 6295 6162 2134 123 25 38 chr12 21327444 21327811 -122458644 + THE1B LTR MaLR 1 362 -2 4054 130 47 14 chr12 21327811 21328380 -122458075 - L1MA4 LINE L1 -138 6162 5564 592 246 0 0 chr12 21328391 21328558 -122457897 - FLAM_A SINE Alu 0 168 2 247 333 72 13 chr12 21328754 21328907 -122457548 + L3 LINE CR1 836 997 -580 194 360 50 29 chr12 21329061 21329200 -122457255 + L3 LINE CR1 1018 1159 -418 206 303 15 45 chr12 21329205 21329271 -122457184 + L3 LINE CR1 1434 1497 -80 388 174 22 0 chr12 21329522 21329614 -122456841 + (TA)n Simple_repeat Simple_repeat 1 94 0 276 252 96 15 chr12 21332906 21333041 -122453414 - L1ME4a LINE L1 0 6121 5976 4937 130 20 4 chr12 21333504 21334312 -122452143 + L1P LINE L1 4480 5300 -846 751 153 8 0 chr12 21334312 21334436 -122452019 + AluSq/x SINE Alu 1 125 -188 722 58 16 50 chr12 21334452 21334573 -122451882 + L1P LINE L1 5293 5409 -765 255 123 48 34 chr12 21334727 21334873 -122451582 + (TA)n Simple_repeat Simple_repeat 2 149 0 209 182 73 0 chr12 21334879 21334934 -122451521 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 267 145 65 22 chr12 21334941 21335079 -122451376 + (TATAG)n Simple_repeat Simple_repeat 2 145 0 39 50 0 0 chr12 21335084 21335144 -122451311 + AT_rich Low_complexity Low_complexity 1 60 0 625 194 78 2 chr12 21335466 21335643 -122450812 - MLT1D LTR MaLR 0 505 286 231 79 26 0 chr12 21335649 21335687 -122450768 + L1MA9 LINE L1 6265 6303 -9 300 318 11 0 chr12 21336115 21336203 -122450252 + L2 LINE L2 3178 3266 -6 195 391 29 22 chr12 21336781 21336919 -122449536 - L2 LINE L2 -236 3036 2898 223 292 15 0 chr12 21337412 21337477 -122448978 - MIR SINE MIR 0 262 197 550 277 130 12 chr12 21338891 21339144 -122447311 + L2 LINE L2 3023 3305 -8 522 330 106 13 chr12 21339223 21339459 -122446996 - MIR SINE MIR 0 262 5 225 336 112 9 chr12 21339672 21339788 -122446667 - MIR3 SINE MIR -8 200 73 574 353 65 14 chr12 21340351 21340790 -122445665 - L2 LINE L2 -147 3166 2701 1263 203 49 36 chr12 21340805 21341260 -122445195 + MLT2B1 LTR ERVL 4 512 -8 880 132 0 0 chr12 21341710 21341846 -122444609 + L1PA10 LINE L1 6027 6162 -6 27672 127 16 74 chr12 21341962 21347267 -122439188 + L1P LINE L1 1 5000 -1146 7352 230 55 44 chr12 21347887 21350764 -122435691 + L1MC/D LINE L1 2636 5530 -745 2292 124 14 0 chr12 21350765 21351129 -122435326 - L1MA3 LINE L1 0 6305 5937 192 167 0 28 chr12 21351390 21351426 -122435029 - MIR SINE MIR -63 145 111 1767 175 34 0 chr12 21351915 21352206 -122434249 + AluJb SINE Alu 4 304 -8 386 269 13 20 chr12 21352722 21352871 -122433584 + HAL1b LINE L1 724 871 -477 866 260 86 27 chr12 21353077 21353369 -122433086 + Charlie1a DNA MER1_type 1 309 -1146 6965 155 40 2 chr12 21353375 21354521 -122431934 + L1M1 LINE L1 18 1207 -6358 * 12381 151 37 23 chr12 21354519 21358649 -122427806 + L1P2 LINE L1 2477 7146 -428 6379 81 24 0 chr12 21358751 21359884 -122426571 + L1PA4 LINE L1 4996 6151 -4 6311 142 12 17 chr12 21359887 21361227 -122425228 + L1MA3 LINE L1 4973 6305 0 3962 233 65 21 chr12 21361231 21362343 -122424112 + Charlie1a DNA MER1_type 293 1453 -2 877 177 143 51 chr12 21362523 21362817 -122423638 - L1MDa LINE L1 -4710 1830 1510 682 198 0 0 chr12 21362815 21362941 -122423514 - L1MDa LINE L1 -6400 140 15 * 240 241 12 48 chr12 21362941 21363024 -122423431 + L1 LINE L1 4890 4969 -1177 2149 110 10 3 chr12 21363056 21363364 -122423091 - AluSq SINE Alu -3 310 1 23 33 0 0 chr12 21363370 21363400 -122423055 + AT_rich Low_complexity Low_complexity 1 30 0 307 286 25 80 chr12 21363404 21363603 -122422852 + L1MC/D LINE L1 5028 5215 -931 839 275 40 40 chr12 21363642 21363988 -122422467 + L1MC/D LINE L1 5255 5600 -2208 308 280 60 0 chr12 21363989 21364089 -122422366 + L1MC/D LINE L1 5635 5740 -2068 290 116 74 8 chr12 21365244 21365365 -122421090 + GA-rich Low_complexity Low_complexity 1 129 0 297 75 0 0 chr12 21365738 21365778 -122420677 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 21365783 21365804 -122420651 + AT_rich Low_complexity Low_complexity 1 21 0 194 304 18 0 chr12 21366584 21366640 -122419815 - L2 LINE L2 0 3272 3216 185 353 101 8 chr12 21366697 21366816 -122419639 + MIR SINE MIR 16 145 -63 234 0 0 0 chr12 21368121 21368147 -122418308 + (CA)n Simple_repeat Simple_repeat 1 26 0 4275 97 3 7 chr12 21368432 21369038 -122417417 + L1P3 LINE L1 755 1358 -5103 200 239 22 0 chr12 21369536 21369582 -122416873 - L2 LINE L2 -12 3301 3255 193 258 0 11 chr12 21369648 21369830 -122416625 + (TA)n Simple_repeat Simple_repeat 1 180 0 469 342 27 16 chr12 21369834 21370018 -122416437 + L3 LINE CR1 1041 1226 -351 21 89 0 0 chr12 21370251 21370307 -122416148 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 21370418 21370454 -122416001 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr12 21370591 21370629 -122415826 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr12 21371062 21371121 -122415334 + AT_rich Low_complexity Low_complexity 1 59 0 306 217 0 0 chr12 21371162 21371231 -122415224 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2437 67 0 3 chr12 21371231 21371528 -122414927 - AluY SINE Alu -15 296 1 220 35 0 0 chr12 21371763 21371792 -122414663 - L2 LINE L2 0 3313 3285 * 4182 301 156 22 chr12 21371789 21373272 -122413183 - L2 LINE L2 -572 2742 884 2832 14 26 0 chr12 21373272 21373622 -122412833 + L1PA2 LINE L1 5794 6152 -3 4182 301 156 22 chr12 21373622 21374274 -122412181 - L2 LINE L2 -2430 884 321 225 65 0 0 chr12 21374317 21374348 -122412107 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 21374348 21374372 -122412083 + (CA)n Simple_repeat Simple_repeat 1 24 0 343 129 0 29 chr12 21374524 21374594 -122411861 + (TCC)n Simple_repeat Simple_repeat 3 70 0 406 329 58 13 chr12 21374595 21374820 -122411635 - LTR16C LTR ERVL -50 441 207 902 176 0 0 chr12 21374865 21375024 -122411431 - L1PB4 LINE L1 0 6156 5998 530 295 13 7 chr12 21375050 21375199 -122411256 + L2 LINE L2 680 829 -2485 279 261 94 36 chr12 21375344 21375482 -122410973 + MLT1L LTR MaLR 231 451 -159 1100 274 97 69 chr12 21375671 21375932 -122410523 + L1MEc LINE L1 1656 1908 -4632 2012 135 7 3 chr12 21375932 21376228 -122410227 + AluSq SINE Alu 1 297 -16 1100 274 97 69 chr12 21376228 21377640 -122408815 + L1MEc LINE L1 1908 3381 -3159 805 283 6 0 chr12 21377649 21377826 -122408629 - MER5A DNA MER1_type 0 189 12 30 45 0 0 chr12 21377855 21377899 -122408556 + AT_rich Low_complexity Low_complexity 1 44 0 617 162 0 9 chr12 21377947 21378052 -122408403 + Tigger2 DNA MER2_type 2 105 -2613 11895 134 56 96 chr12 21378153 21378826 -122407629 + Tigger2 DNA MER2_type 395 1094 -1624 1475 141 18 114 chr12 21378826 21378965 -122407490 + AluJb SINE Alu 1 91 -211 771 112 0 0 chr12 21378965 21379081 -122407374 + (TA)n Simple_repeat Simple_repeat 1 116 0 1475 141 18 114 chr12 21379081 21379275 -122407180 + AluJb SINE Alu 91 302 0 11895 134 56 96 chr12 21379275 21379537 -122406918 + Tigger2 DNA MER2_type 1094 1365 -1353 775 235 6 6 chr12 21379537 21379703 -122406752 - FRAM SINE Alu -10 166 1 11895 134 56 96 chr12 21379703 21381023 -122405432 + Tigger2 DNA MER2_type 1365 2718 0 671 280 101 3 chr12 21381193 21381489 -122404966 + L2 LINE L2 1181 1505 -1809 814 188 80 6 chr12 21381566 21381742 -122404713 + MER5A DNA MER1_type 1 189 0 2025 186 23 30 chr12 21382069 21382123 -122404332 - MLT1C LTR MaLR 0 467 414 1325 81 63 18 chr12 21382123 21382345 -122404110 + L1PA10 LINE L1 5937 6168 0 2025 186 23 30 chr12 21382345 21382725 -122403730 - MLT1C LTR MaLR -53 414 36 21 36 0 0 chr12 21383159 21383187 -122403268 + AT_rich Low_complexity Low_complexity 1 28 0 765 246 25 20 chr12 21383257 21383533 -122402922 - Charlie7 DNA MER1_type -2078 534 217 373 274 9 9 chr12 21383576 21383689 -122402766 + GA-rich Low_complexity Low_complexity 2 114 0 24 0 0 0 chr12 21386470 21386494 -122399961 + AT_rich Low_complexity Low_complexity 1 24 0 2289 85 20 7 chr12 21386563 21386688 -122399767 + AluY SINE Alu 1 123 -188 353 22 22 0 chr12 21386688 21386734 -122399721 + (CA)n Simple_repeat Simple_repeat 2 48 0 2289 85 20 7 chr12 21386734 21386913 -122399542 + AluY SINE Alu 123 309 -2 270 0 0 0 chr12 21387039 21387069 -122399386 + (A)n Simple_repeat Simple_repeat 1 30 0 2383 75 3 3 chr12 21388011 21388316 -122398139 - AluY SINE Alu -6 305 1 238 295 48 0 chr12 21389637 21389742 -122396713 + MIR SINE MIR 37 152 -62 220 217 277 12 chr12 21389888 21389971 -122396484 + MIR3 SINE MIR 2 106 -102 25 0 0 0 chr12 21391248 21391273 -122395182 + AT_rich Low_complexity Low_complexity 1 25 0 418 308 99 16 chr12 21391291 21391544 -122394911 + L1M4 LINE L1 4748 5021 -1125 6218 246 158 15 chr12 21391544 21393758 -122392697 + L1PA12 LINE L1 6 3071 -4510 595 167 61 122 chr12 21393766 21394029 -122392426 + L1MA9 LINE L1 6061 6307 -5 587 190 0 0 chr12 21394054 21394154 -122392301 + FLAM_A SINE Alu 20 119 -23 220 262 0 16 chr12 21394519 21394580 -122391875 - MER5A DNA MER1_type 0 189 130 2107 127 0 22 chr12 21396093 21396408 -122390047 + AluSc SINE Alu 1 308 -1 367 227 57 11 chr12 21397718 21397806 -122388649 - L2 LINE L2 -14 3299 3208 22 0 0 0 chr12 21397952 21397974 -122388481 + AT_rich Low_complexity Low_complexity 1 22 0 609 81 0 0 chr12 21398814 21398901 -122387554 + L1PA3 LINE L1 6069 6155 0 352 283 57 9 chr12 21398959 21399065 -122387390 - L2 LINE L2 -2 3311 3201 707 343 29 0 chr12 21399511 21399791 -122386664 + MLT1J LTR MaLR 224 511 0 483 259 177 6 chr12 21401423 21401581 -122384874 + MIR SINE MIR 2 186 -76 269 179 60 0 chr12 21402866 21402933 -122383522 + L1MA5A LINE L1 6224 6294 -3 785 238 29 0 chr12 21403866 21404038 -122382417 + MER45A DNA AcHobo 1 177 -1 23 54 0 0 chr12 21404179 21404216 -122382239 + AT_rich Low_complexity Low_complexity 1 37 0 203 269 19 0 chr12 21404334 21404386 -122382069 + CT-rich Low_complexity Low_complexity 3 55 0 324 374 89 0 chr12 21404389 21404512 -122381943 - L2 LINE L2 -23 3249 3116 199 398 56 64 chr12 21405083 21405425 -122381030 - L2 LINE L2 -15 3257 2919 269 192 19 0 chr12 21405960 21406012 -122380443 - L3 LINE CR1 -2 1575 1523 2180 102 0 3 chr12 21407811 21408157 -122378298 - AluSx SINE Alu 0 345 1 206 375 41 66 chr12 21408887 21408990 -122377465 + L2 LINE L2 2360 2464 -850 1264 226 107 3 chr12 21408990 21409317 -122377138 + MLT1A1 LTR MaLR 5 365 0 206 375 41 66 chr12 21409317 21409456 -122376999 + L2 LINE L2 2464 2596 -718 333 0 0 0 chr12 21409737 21409774 -122376681 + (CA)n Simple_repeat Simple_repeat 2 38 0 1697 175 110 22 chr12 21410364 21410828 -122375627 + MLT2A2 LTR ERVL 1 520 -34 858 142 53 60 chr12 21410864 21411166 -122375289 + HERV9 LTR ERV1 840 1139 -5757 294 213 0 0 chr12 21411167 21411228 -122375227 + HERV9 LTR ERV1 7504 7564 -835 * 4795 127 16 127 chr12 21411224 21413382 -122373073 + pTR5 LTR ERV1 504 2606 0 350 0 0 0 chr12 21413382 21413421 -122373034 + MLT2A2 LTR ERVL 415 453 0 2342 114 114 5 chr12 21413598 21413984 -122372471 - MSTA LTR MaLR 0 428 1 2081 181 58 29 chr12 21414412 21414860 -122371595 - LOR1b LTR ERV1 0 461 1 249 345 118 20 chr12 21414866 21415069 -122371386 + MIR SINE MIR 25 247 -15 289 339 16 0 chr12 21415142 21415263 -122371192 - L2 LINE L2 -223 3049 2927 231 81 0 27 chr12 21415269 21415306 -122371149 - LTR28 LTR ERV1 0 1020 985 510 224 238 14 chr12 21416282 21416492 -122369963 + MIR SINE MIR 3 259 -3 5369 137 11 16 chr12 21417433 21418474 -122367981 + L1PA16 LINE L1 5127 6162 -4 24 32 0 0 chr12 21420014 21420045 -122366410 + AT_rich Low_complexity Low_complexity 1 31 0 1398 103 0 0 chr12 21421470 21421654 -122364801 - AluSg/x SINE Alu -18 294 111 1497 77 5 0 chr12 21421876 21422071 -122364384 - AluSg/x SINE Alu -6 306 111 2300 48 0 64 chr12 21422293 21422607 -122363848 - AluY SINE Alu -17 294 1 491 295 111 25 chr12 21423189 21423433 -122363022 - MLT1K LTR MaLR -2 586 322 239 174 22 0 chr12 21423497 21423543 -122362912 - MLT1K LTR MaLR -359 229 183 249 250 0 0 chr12 21424422 21424470 -122361985 + MIR SINE MIR 84 131 -77 525 268 117 11 chr12 21424598 21424777 -122361678 - MLT1I LTR MaLR -17 392 195 659 225 104 12 chr12 21425469 21425642 -122360813 + MER5A DNA MER1_type 1 189 0 324 48 0 0 chr12 21428185 21428227 -122358228 + (CA)n Simple_repeat Simple_repeat 1 42 0 2325 146 68 2 chr12 21428448 21428845 -122357610 - MSTA LTR MaLR 0 428 6 264 196 54 0 chr12 21429259 21429315 -122357140 + MER20B DNA MER1_type 723 781 -2 230 267 0 0 chr12 21430066 21430126 -122356329 + 5S rRNA rRNA 31 90 -31 1116 15 0 0 chr12 21431554 21431684 -122354771 + L1PA3 LINE L1 6026 6155 0 1689 140 67 0 chr12 21432927 21433214 -122353241 + MER7A DNA MER2_type 8 312 -34 316 137 0 0 chr12 21433206 21433257 -122353198 + MSTB2 LTR MaLR 407 457 0 * 1078 299 62 76 chr12 21433257 21433672 -122352783 - L2 LINE L2 -27 3286 2867 650 228 88 16 chr12 21433672 21433865 -122352590 - MER3 DNA MER1_type -1 208 2 1078 299 62 76 chr12 21433865 21434460 -122351995 - L2 LINE L2 -446 2867 2291 21 36 0 0 chr12 21435174 21435202 -122351253 + AT_rich Low_complexity Low_complexity 1 28 0 184 153 0 51 chr12 21437037 21437096 -122349359 + CT-rich Low_complexity Low_complexity 4 59 0 225 154 0 0 chr12 21437752 21437791 -122348664 + (CGTG)n Simple_repeat Simple_repeat 3 41 0 270 73 0 0 chr12 21438959 21439000 -122347455 + (T)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr12 21440386 21440421 -122346034 + AT_rich Low_complexity Low_complexity 1 35 0 191 235 0 15 chr12 21445203 21445271 -122341184 + (TG)n Simple_repeat Simple_repeat 1 67 0 713 363 81 78 chr12 21445372 21445694 -122340761 - MER33 DNA MER1_type -1 323 1 21 57 0 0 chr12 21448999 21449034 -122337421 + AT_rich Low_complexity Low_complexity 1 35 0 338 328 11 101 chr12 21450241 21450430 -122336025 - MER5A DNA MER1_type -2 187 16 379 223 0 89 chr12 21450637 21450749 -122335706 + MIR SINE MIR 88 189 -73 198 298 53 61 chr12 21450834 21450965 -122335490 + MIR SINE MIR 98 227 -35 556 276 138 40 chr12 21451907 21452233 -122334222 - L2 LINE L2 -462 2852 2495 2970 123 0 2 chr12 21502659 21503082 -122283373 - HERVH LTR ERV1 -2804 4909 4488 3372 100 4 4 chr12 21503084 21503573 -122282882 - HERVH LTR ERV1 -3720 3993 3505 904 136 27 0 chr12 21503577 21503724 -122282731 - HERVH LTR ERV1 -4423 3290 3140 * 15136 138 16 14 chr12 21503703 21506380 -122280075 - HERVH LTR ERV1 -4718 2995 1 3630 64 2 7 chr12 21506382 21506832 -122279623 - LTR7 LTR ERV1 -2 448 1 962 45 0 0 chr12 21506832 21506944 -122279511 - L1P LINE L1 -6030 116 5 2596 196 31 21 chr12 21507170 21507752 -122278703 - L1 LINE L1 -1975 4171 3584 2582 231 20 27 chr12 21507798 21508528 -122277927 - L1 LINE L1 -3128 3018 2294 2246 82 26 10 chr12 21508528 21508832 -122277623 - AluSc SINE Alu 0 309 1 783 227 0 27 chr12 21508849 21508999 -122277456 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 21509466 21509495 -122276960 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 21509504 21509534 -122276921 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 21510012 21510033 -122276422 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 21510558 21510593 -122275862 + AT_rich Low_complexity Low_complexity 1 35 0 333 272 125 41 chr12 21510848 21511320 -122275135 + L1 LINE L1 2759 3308 -2838 575 138 0 0 chr12 21511411 21511520 -122274935 + L1P LINE L1 5254 5362 -804 2303 71 0 0 chr12 21511523 21511823 -122274632 + AluY SINE Alu 1 300 0 241 289 48 10 chr12 21511987 21512091 -122274364 + L1 LINE L1 3589 3696 -2450 342 0 0 0 chr12 21512370 21512408 -122274047 + (T)n Simple_repeat Simple_repeat 1 38 0 982 219 0 5 chr12 21513047 21513243 -122273212 + HERVH LTR ERV1 4955 5149 -2564 1155 128 88 10 chr12 21513244 21513448 -122273007 + HERVH LTR ERV1 5600 5819 -1894 2548 87 45 13 chr12 21513448 21513826 -122272629 + HERVH LTR ERV1 7324 7713 0 3411 69 2 7 chr12 21513826 21514276 -122272179 + LTR7 LTR ERV1 1 448 -2 43131 45 3 2 chr12 21514278 21520320 -122266135 + L1PA3 LINE L1 112 6155 0 4509 181 56 38 chr12 21520314 21521444 -122265011 + L1 LINE L1 4156 5305 -841 * 1765 132 27 14 chr12 21521457 21521753 -122264702 - L1MA4A LINE L1 -335 5968 5669 6417 130 124 107 chr12 21521817 21523644 -122262811 - pTR5 LTR ERV1 0 8399 389 15560 25 2 0 chr12 21523744 21526350 -122260105 + L1PA3 LINE L1 3544 6153 -2 3188 170 63 5 chr12 21526370 21527035 -122259420 - L1 LINE L1 -1548 5300 4597 7628 186 54 39 chr12 21527057 21528085 -122258370 - L1 LINE L1 -2607 4241 3230 296 77 0 0 chr12 21528085 21528124 -122258331 + U2 snRNA snRNA 4 42 -146 7628 186 54 39 chr12 21528124 21528989 -122257466 - L1 LINE L1 -3618 3230 2379 2449 73 0 0 chr12 21528989 21529289 -122257166 - AluY SINE Alu -11 300 1 7628 186 54 39 chr12 21529289 21529944 -122256511 - L1 LINE L1 -4469 2379 1735 2196 101 0 0 chr12 21529944 21530230 -122256225 - AluY SINE Alu -6 305 20 7628 186 54 39 chr12 21530230 21530932 -122255523 - L1 LINE L1 -5113 1735 2 2352 88 0 3 chr12 21531733 21532038 -122254417 - AluY SINE Alu -7 304 1 293 70 42 28 chr12 21532343 21532414 -122254041 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 21 0 0 0 chr12 21532498 21532519 -122253936 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 21533317 21533361 -122253094 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 62 31 0 chr12 21534210 21534242 -122252213 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 91 0 0 chr12 21536515 21536603 -122249852 + AT_rich Low_complexity Low_complexity 1 88 0 2266 105 13 0 chr12 21537621 21537926 -122248529 + AluSp SINE Alu 1 309 -4 24 32 0 0 chr12 21538452 21538483 -122247972 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 21540405 21540427 -122246028 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr12 21541283 21541305 -122245150 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 21541745 21541767 -122244688 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr12 21541824 21541884 -122244571 + AT_rich Low_complexity Low_complexity 1 60 0 279 0 0 0 chr12 21542533 21542564 -122243891 + (CA)n Simple_repeat Simple_repeat 1 31 0 953 35 0 0 chr12 21543110 21543226 -122243229 - L1PA4 LINE L1 -14 6141 6026 362 343 43 39 chr12 21543261 21543541 -122242914 + ERVL LTR ERVL 5043 5323 -441 335 209 55 18 chr12 21543672 21543782 -122242673 - L1MC5 LINE L1 -48 7913 7800 212 290 10 0 chr12 21543803 21543903 -122242552 + (TA)n Simple_repeat Simple_repeat 2 102 0 1063 209 36 111 chr12 21543934 21544521 -122241934 - L1MC5 LINE L1 -247 7714 7172 1463 141 12 8 chr12 21544525 21544773 -122241682 + L1PA16 LINE L1 5911 6159 -7 801 228 111 96 chr12 21545282 21545892 -122240563 - L1MC5 LINE L1 -785 7176 6618 1168 305 114 0 chr12 21545984 21546371 -122240084 - L2 LINE L2 -1093 2221 1791 762 331 141 14 chr12 21546372 21546868 -122239587 - L2 LINE L2 -1766 1548 990 1569 233 70 12 chr12 21546873 21547302 -122239153 + MLT1C LTR MaLR 6 459 -8 604 248 23 8 chr12 21547304 21547437 -122239018 + MER58B DNA MER1_type 205 339 -2 22 0 0 0 chr12 21547966 21547988 -122238467 + AT_rich Low_complexity Low_complexity 1 22 0 236 324 3 83 chr12 21548014 21548171 -122238284 - MIR SINE MIR -52 210 66 185 62 0 31 chr12 21548549 21548581 -122237874 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 301 330 92 12 chr12 21549333 21549506 -122236949 + MIR SINE MIR 15 201 -61 311 167 0 0 chr12 21550779 21550833 -122235622 - MER103 DNA DNA -94 72 19 480 297 151 25 chr12 21550896 21551253 -122235202 - L1 LINE L1 -2111 4035 3634 229 213 71 85 chr12 21551734 21551875 -122234580 - HAL1 LINE L1 -79 2428 2290 21 0 0 0 chr12 21552854 21552875 -122233580 + AT_rich Low_complexity Low_complexity 1 21 0 230 317 50 0 chr12 21553316 21553376 -122233079 - L2 LINE L2 -12 3301 3239 1299 203 88 21 chr12 21553469 21553809 -122232646 - L1M2 LINE L1 -678 5634 5272 1235 51 6 0 chr12 21553820 21553978 -122232477 - L1PA5 LINE L1 -3 6151 5993 358 213 0 0 chr12 21555888 21555949 -122230506 - MER5A DNA MER1_type -118 71 11 22 0 0 0 chr12 21556219 21556241 -122230214 + AT_rich Low_complexity Low_complexity 1 22 0 601 320 54 24 chr12 21556637 21557316 -122229139 - L1M2 LINE L1 -1832 4314 3596 318 26 0 0 chr12 21557316 21557355 -122229100 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 62 0 31 chr12 21557592 21557624 -122228831 + (TA)n Simple_repeat Simple_repeat 1 31 0 408 313 34 14 chr12 21558293 21558440 -122228015 + MER5A DNA MER1_type 1 150 -39 193 270 32 16 chr12 21560319 21560382 -122226073 - MIR3 SINE MIR -2 206 143 467 293 8 8 chr12 21560874 21561007 -122225448 + MIR SINE MIR 81 213 -49 218 260 16 134 chr12 21561309 21561436 -122225019 - L2 LINE L2 -18 3295 3184 1039 307 57 18 chr12 21561700 21562137 -122224318 - L2 LINE L2 -48 3265 2812 254 252 402 0 chr12 21562151 21562278 -122224177 - MER5A DNA MER1_type -3 186 9 760 230 28 6 chr12 21562287 21562465 -122223990 - L2 LINE L2 -517 2797 2616 22 35 0 0 chr12 21562888 21562917 -122223538 + AT_rich Low_complexity Low_complexity 1 29 0 2918 9 0 0 chr12 21562967 21563285 -122223170 + AluYb8 SINE Alu 1 318 0 1288 34 0 0 chr12 21563563 21563712 -122222743 - AluY SINE Alu 0 311 163 1393 107 70 5 chr12 21564339 21564554 -122221901 + MER30 DNA MER1_type 1 229 -1 2749 10 0 0 chr12 21566446 21566746 -122219709 - AluY SINE Alu -11 300 1 967 188 61 0 chr12 21567049 21567246 -122219209 + MER3 DNA MER1_type 1 209 0 293 351 9 0 chr12 21567586 21567700 -122218755 + MIR SINE MIR 145 259 -3 22 0 0 0 chr12 21570721 21570743 -122215712 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr12 21571013 21571059 -122215396 + (T)n Simple_repeat Simple_repeat 1 46 0 247 250 118 96 chr12 21572072 21572208 -122214247 - L2 LINE L2 0 3313 3175 11425 178 16 29 chr12 21572949 21573133 -122213322 + Tigger1 DNA MER2_type 1 186 -2232 303 28 0 0 chr12 21573133 21573169 -122213286 + (TTA)n Simple_repeat Simple_repeat 1 36 0 11425 178 16 29 chr12 21573169 21574787 -122211668 + Tigger1 DNA MER2_type 186 1780 -638 2488 62 3 0 chr12 21574787 21575091 -122211364 + AluSp SINE Alu 1 305 -8 11425 178 16 29 chr12 21575091 21575722 -122210733 + Tigger1 DNA MER2_type 1780 2418 0 231 192 55 55 chr12 21578391 21578464 -122207991 - L1ME2 LINE L1 -9 6155 6083 369 0 0 0 chr12 21578483 21578524 -122207931 + (TA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chr12 21578524 21578550 -122207905 + (TG)n Simple_repeat Simple_repeat 2 27 0 1074 277 52 6 chr12 21578555 21578918 -122207537 - L1ME3 LINE L1 -93 6069 5693 38 68 0 0 chr12 21578918 21578991 -122207464 + AT_rich Low_complexity Low_complexity 1 73 0 340 161 83 12 chr12 21579005 21579173 -122207282 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 161 77 19 chr12 21579097 21579252 -122207203 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 38 75 0 0 chr12 21579256 21579336 -122207119 + AT_rich Low_complexity Low_complexity 1 80 0 247 179 24 32 chr12 21579340 21579463 -122206992 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 214 198 62 10 chr12 21579475 21579571 -122206884 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 35 41 0 0 chr12 21579685 21579734 -122206721 + AT_rich Low_complexity Low_complexity 1 49 0 776 275 27 9 chr12 21579740 21579962 -122206493 - L1ME3 LINE L1 -526 5636 5411 239 302 121 13 chr12 21580132 21580281 -122206174 + MIR SINE MIR 92 256 -6 22 0 0 0 chr12 21580752 21580774 -122205681 + AT_rich Low_complexity Low_complexity 1 22 0 5373 168 14 17 chr12 21580774 21581569 -122204886 - L1PA16 LINE L1 -7 6159 5359 2380 46 0 0 chr12 21581569 21581880 -122204575 - AluY SINE Alu 0 311 1 5373 168 14 17 chr12 21581880 21582414 -122204041 - L1PA16 LINE L1 -807 5359 4825 26 64 0 0 chr12 21582928 21582975 -122203480 + AT_rich Low_complexity Low_complexity 1 47 0 1487 231 40 23 chr12 21584889 21585357 -122201098 - LTR22 LTR ERVK -4 454 1 596 274 14 14 chr12 21586004 21586150 -122200305 - MIR SINE MIR -105 157 12 476 270 170 35 chr12 21586281 21586511 -122199944 + MIR SINE MIR 2 262 0 264 283 85 19 chr12 21587521 21587627 -122198828 + MIR SINE MIR 118 230 -32 430 318 74 5 chr12 21588814 21589003 -122197452 - MARNA DNA Mariner -43 543 342 247 286 39 0 chr12 21589015 21589092 -122197363 - MARNA DNA Mariner -474 112 33 476 282 18 31 chr12 21589378 21589541 -122196914 + MIR3 SINE MIR 38 198 -10 272 359 33 0 chr12 21589929 21590021 -122196434 - L2 LINE L2 -30 3242 3148 227 343 127 12 chr12 21591536 21591702 -122194753 - MIR3 SINE MIR 0 208 24 1704 177 30 35 chr12 21591928 21592295 -122194160 - MLT1A1 LTR MaLR 0 365 1 221 250 0 0 chr12 21592673 21592721 -122193734 + T-rich Low_complexity Low_complexity 1 48 0 274 349 53 8 chr12 21592835 21592967 -122193488 - MIR SINE MIR -72 190 53 595 328 61 77 chr12 21593240 21594006 -122192449 - L2 LINE L2 -3 3310 2543 282 29 0 0 chr12 21594855 21594890 -122191565 + (TA)n Simple_repeat Simple_repeat 2 36 0 1981 157 24 8 chr12 21594986 21595355 -122191100 - THE1C LTR MaLR 0 375 1 1471 238 64 31 chr12 21595356 21596025 -122190430 - Charlie2 DNA MER1_type -4 2858 2168 195 42 0 0 chr12 21596597 21596621 -122189834 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2080 64 18 25 chr12 21596624 21596906 -122189549 - AluY SINE Alu -31 280 1 211 241 0 17 chr12 21597563 21597621 -122188834 + CT-rich Low_complexity Low_complexity 3 59 0 531 281 45 9 chr12 21597776 21597997 -122188458 + Charlie2a DNA MER1_type 611 839 -2023 29 28 0 0 chr12 21598034 21598070 -122188385 + AT_rich Low_complexity Low_complexity 1 36 0 1739 265 107 73 chr12 21598508 21599614 -122186841 + L1MC5 LINE L1 5254 6321 -1640 2309 109 0 0 chr12 21599614 21599925 -122186530 + AluSx SINE Alu 1 311 -1 1739 265 107 73 chr12 21599925 21601214 -122185241 + L1MC5 LINE L1 6321 7793 -168 1921 136 0 14 chr12 21601214 21601509 -122184946 + AluSx SINE Alu 1 291 -21 1739 265 107 73 chr12 21601509 21601637 -122184818 + L1MC5 LINE L1 7793 7915 -46 786 271 70 24 chr12 21601925 21602308 -122184147 - L1MC5 LINE L1 -86 7875 7475 1777 257 78 47 chr12 21602310 21603136 -122183319 - L1MC4 LINE L1 -2 8040 7190 386 281 111 28 chr12 21603349 21603594 -122182861 - Charlie8 DNA MER1_type -1010 1407 71 191 361 14 0 chr12 21603774 21603846 -122182609 - L2 LINE L2 -61 3211 3139 519 310 110 58 chr12 21604239 21604684 -122181771 - L2 LINE L2 -685 2629 2162 602 208 23 15 chr12 21605987 21606117 -122180338 + MER94 DNA DNA 1 131 -3 28 0 0 0 chr12 21606804 21606832 -122179623 + AT_rich Low_complexity Low_complexity 1 28 0 2427 73 0 0 chr12 21607620 21607920 -122178535 - AluY SINE Alu -11 300 1 229 222 185 0 chr12 21608381 21608462 -122177993 - MIR SINE MIR -115 147 52 383 210 81 66 chr12 21608910 21609021 -122177434 - FLAM_A SINE Alu -28 105 5 365 312 99 41 chr12 21610334 21610555 -122175900 - MIR SINE MIR -6 256 23 612 179 77 8 chr12 21610850 21610967 -122175488 - FLAM_A SINE Alu -8 125 1 351 252 29 0 chr12 21610977 21611080 -122175375 - HAL1 LINE L1 -144 2363 2258 309 267 22 67 chr12 21611170 21611305 -122175150 - HAL1b LINE L1 -471 877 749 342 0 0 0 chr12 21611403 21611441 -122175014 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 21611989 21612009 -122174446 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 427 199 54 5 chr12 21612009 21612195 -122174260 - AluY SINE Alu -31 280 86 461 270 72 65 chr12 21612640 21613098 -122173357 + L1MCa LINE L1 103 788 -5634 850 237 77 11 chr12 21613476 21613763 -122172692 + L1MCa LINE L1 1129 1434 -4989 7064 216 34 10 chr12 21614261 21616965 -122169490 + L1PA16 LINE L1 3404 6165 -1 9377 224 52 12 chr12 21616979 21620010 -122166445 + L1MA5A LINE L1 2627 5785 -512 694 71 36 0 chr12 21620010 21620122 -122166333 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 5659 39 4 0 chr12 21620123 21620820 -122165635 - L1PA5 LINE L1 -1630 4516 3817 7262 37 8 1 chr12 21620820 21622439 -122164016 + L1PA5 LINE L1 4521 6145 -9 230 81 27 0 chr12 21622452 21622489 -122163966 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1502 164 8 4 chr12 21622513 21622775 -122163680 + L1MA5A LINE L1 5797 6059 -238 7392 222 34 19 chr12 21622785 21624081 -122162374 + L1MA6 LINE L1 2116 3436 -2710 874 142 13 7 chr12 21624081 21624236 -122162219 + L1PB2 LINE L1 5990 6145 -6 7392 222 34 19 chr12 21624236 21624944 -122161511 + L1MA6 LINE L1 3436 4132 -2014 4863 173 43 27 chr12 21624942 21626559 -122159896 + L1MA6 LINE L1 4659 6285 -15 * 31 44 0 0 chr12 21626699 21626744 -122159711 + AT_rich Low_complexity Low_complexity 1 45 0 242 317 0 0 chr12 21626759 21626841 -122159614 + L1MC4 LINE L1 6615 6696 -1346 272 214 14 14 chr12 21626847 21626917 -122159538 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 188 338 95 0 chr12 21627018 21627092 -122159363 + MER5B DNA MER1_type 24 104 -74 231 36 0 0 chr12 21627612 21627640 -122158815 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr12 21627905 21627934 -122158521 + AT_rich Low_complexity Low_complexity 1 29 0 4678 208 56 6 chr12 21628839 21629936 -122156519 + L1MCa LINE L1 531 1682 -4744 * 39167 41 1 1 chr12 21629933 21634750 -122151705 + L1P LINE L1 2 4815 -1331 1038 182 11 0 chr12 21634750 21634932 -122151523 + L1MC1 LINE L1 6142 6330 -3 654 218 95 78 chr12 21635166 21635233 -122151222 - MLT1D LTR MaLR -82 423 359 2001 147 0 3 chr12 21635233 21635546 -122150909 - AluSx SINE Alu 0 312 1 654 218 95 78 chr12 21635546 21635721 -122150734 - MLT1D LTR MaLR -146 359 177 302 0 26 0 chr12 21635750 21635788 -122150667 + (CA)n Simple_repeat Simple_repeat 2 40 0 2295 81 0 0 chr12 21636022 21636317 -122150138 + AluY SINE Alu 1 295 -16 221 392 31 0 chr12 21636467 21636564 -122149891 + L3 LINE CR1 1422 1521 -56 329 300 62 24 chr12 21636626 21636836 -122149619 - L1MC4a LINE L1 -1870 5938 5721 2601 298 76 27 chr12 21637056 21637563 -122148892 - L1MC2 LINE L1 -11 6333 5769 1569 158 169 21 chr12 21637563 21637936 -122148519 + MSTA LTR MaLR 1 428 0 2601 298 76 27 chr12 21637936 21638243 -122148212 - L1MC2 LINE L1 -575 5769 5479 22 0 0 0 chr12 21638362 21638384 -122148071 + AT_rich Low_complexity Low_complexity 1 22 0 1724 134 21 3 chr12 21638400 21638690 -122147765 - L1PA15 LINE L1 -2 6163 5869 1772 153 0 0 chr12 21638690 21638972 -122147483 + L1P4 LINE L1 5395 5676 -489 2420 129 11 5 chr12 21639016 21639389 -122147066 + THE1C LTR MaLR 1 375 0 9160 129 40 37 chr12 21639389 21640965 -122145490 + THE1C-int LTR MaLR 1 1580 0 2640 111 0 5 chr12 21640965 21641342 -122145113 + THE1C LTR MaLR 1 375 0 384 370 60 5 chr12 21641684 21641884 -122144571 + MIR SINE MIR 52 262 0 21 36 0 0 chr12 21641938 21641966 -122144489 + AT_rich Low_complexity Low_complexity 1 28 0 981 183 5 5 chr12 21644273 21644464 -122141991 + L1PB1 LINE L1 3 193 -6670 * 13840 194 45 19 chr12 21644451 21646424 -122140031 + L1PB1 LINE L1 620 2541 -4326 279 0 0 0 chr12 21646424 21646455 -122140000 + (CA)n Simple_repeat Simple_repeat 2 32 0 13840 194 45 19 chr12 21646455 21650497 -122135958 + L1PB1 LINE L1 2541 6867 0 21 36 0 0 chr12 21651406 21651434 -122135021 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 83 0 chr12 21652047 21652095 -122134360 - L2 LINE L2 -6 3266 3215 352 248 80 66 chr12 21652126 21652263 -122134192 + MIR SINE MIR 68 206 -56 239 325 9 9 chr12 21652924 21653038 -122133417 + (CA)n Simple_repeat Simple_repeat 2 115 0 2227 321 126 25 chr12 21653095 21653286 -122133169 + L2 LINE L2 107 277 -3037 2094 122 0 7 chr12 21653286 21653582 -122132873 - AluSx SINE Alu -18 294 1 2227 321 126 25 chr12 21653582 21654981 -122131474 + L2 LINE L2 277 1857 -1457 463 235 74 7 chr12 21654998 21655192 -122131263 + L1PB4 LINE L1 907 1114 -5090 1186 81 0 0 chr12 21655210 21655359 -122131096 + AluSc SINE Alu 149 297 -12 10516 220 43 41 chr12 21655438 21659900 -122126555 + L1PB4 LINE L1 1253 5718 -495 1875 166 0 6 chr12 21659900 21660026 -122126429 + AluSq SINE Alu 1 126 -187 642 104 0 0 chr12 21660026 21660122 -122126333 + (CATAA)n Simple_repeat Simple_repeat 2 97 0 1875 166 0 6 chr12 21660122 21660309 -122126146 + AluSq SINE Alu 126 312 -1 10516 220 43 41 chr12 21660309 21660803 -122125652 + L1PB4 LINE L1 5718 6210 -3 1803 330 112 44 chr12 21660857 21662212 -122124243 + L2 LINE L2 1883 3313 0 415 323 100 35 chr12 21662895 21663388 -122123067 + L2 LINE L2 2785 3312 -1 22 56 0 0 chr12 21664286 21664322 -122122133 + AT_rich Low_complexity Low_complexity 1 36 0 349 295 0 33 chr12 21666476 21666598 -122119857 + GA-rich Low_complexity Low_complexity 4 121 0 224 356 9 17 chr12 21666801 21666916 -122119539 + MIR3 SINE MIR 89 202 -6 22 0 0 0 chr12 21667298 21667320 -122119135 + AT_rich Low_complexity Low_complexity 1 22 0 1457 217 102 3 chr12 21667383 21667715 -122118740 + MLT1A1 LTR MaLR 1 365 0 352 205 71 31 chr12 21667846 21667973 -122118482 - Charlie1 DNA MER1_type -3 2758 2627 723 277 33 0 chr12 21667973 21668157 -122118298 - Charlie1 DNA MER1_type -2544 217 28 269 308 75 42 chr12 21668499 21668619 -122117836 + MIR3 SINE MIR 79 202 -6 192 405 40 7 chr12 21669080 21669228 -122117227 + L3b LINE CR1 1300 1452 -131 247 366 113 14 chr12 21669266 21669408 -122117047 + MIR SINE MIR 12 167 -95 387 184 0 0 chr12 21669859 21669865 -122116590 + (TA)n Simple_repeat Simple_repeat 2 7 -108 369 0 0 0 chr12 21669865 21669906 -122116549 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 184 0 0 chr12 21669906 21670013 -122116442 + (TA)n Simple_repeat Simple_repeat 6 115 0 248 269 54 30 chr12 21671624 21671791 -122114664 - L1ME4a LINE L1 -115 6006 5836 1292 246 0 4 chr12 21671902 21672288 -122114167 + AluJb SINE Alu 5 389 0 42 36 0 0 chr12 21672314 21672370 -122114085 + AT_rich Low_complexity Low_complexity 1 56 0 521 315 122 13 chr12 21673143 21673381 -122113074 - L3 LINE CR1 -35 1542 1279 603 123 69 100 chr12 21673699 21673829 -122112626 + MER63 DNA MER1_type 1 752 -310 68 24 0 0 chr12 21674310 21674392 -122112063 + AT_rich Low_complexity Low_complexity 1 82 0 732 283 11 38 chr12 21675316 21675581 -122110874 + HsTC2a DNA Tc2 4 261 -483 1056 228 5 9 chr12 21675582 21675793 -122110662 + L1MA1 LINE L1 1699 1908 -5657 6453 179 24 29 chr12 21675796 21678926 -122107529 + L1MA1 LINE L1 1963 7721 0 13467 184 25 27 chr12 21678942 21679804 -122106651 + L1MA2 LINE L1 2268 3130 -4593 1941 150 23 0 chr12 21679804 21680110 -122106345 - AluSq SINE Alu 0 313 1 13467 184 25 27 chr12 21680110 21681859 -122104596 + L1MA2 LINE L1 3130 4881 -2842 366 94 0 0 chr12 21681859 21681912 -122104543 + MADE1 DNA Mariner 1 53 -27 13467 184 25 27 chr12 21681912 21684556 -122101899 + L1MA2 LINE L1 4881 7723 0 23 0 0 0 chr12 21684556 21684579 -122101876 + AT_rich Low_complexity Low_complexity 1 23 0 8707 212 53 58 chr12 21684604 21685583 -122100872 + L1MB1 LINE L1 2908 3891 -3696 545 215 0 0 chr12 21685583 21685676 -122100779 + MER2 DNA MER2_type 1 93 -252 8707 212 53 58 chr12 21685676 21687459 -122098996 + L1MB1 LINE L1 3891 5682 -1905 390 42 0 0 chr12 21687459 21687507 -122098948 + (CA)n Simple_repeat Simple_repeat 1 48 0 8707 212 53 58 chr12 21687507 21689307 -122097148 + L1MB1 LINE L1 5682 7528 -59 13746 159 27 62 chr12 21689307 21691169 -122095286 - Tigger2 DNA MER2_type 0 2718 984 2982 105 11 0 chr12 21691169 21691607 -122094848 - L1PA10 LINE L1 -2 6166 5724 13746 159 27 62 chr12 21691607 21692558 -122093897 - Tigger2 DNA MER2_type -1734 984 2 317 167 0 0 chr12 21692559 21692619 -122093836 + L1MB1 LINE L1 7527 7586 -1 391 306 101 21 chr12 21696006 21696333 -122090122 - L1ME4a LINE L1 -246 5875 5523 22 0 0 0 chr12 21696384 21696406 -122090049 + AT_rich Low_complexity Low_complexity 1 22 0 531 292 125 19 chr12 21696596 21696812 -122089643 + MER8 DNA MER2_type 1 239 0 260 376 62 6 chr12 21697820 21697982 -122088473 - L2 LINE L2 -212 3060 2890 448 325 51 5 chr12 21698331 21698528 -122087927 + MLT1J LTR MaLR 6 211 -300 190 389 67 0 chr12 21699825 21699915 -122086540 - L2 LINE L2 -224 3048 2953 524 334 83 55 chr12 21699950 21700404 -122086051 + HAL1 LINE L1 830 1269 -1238 1929 122 3 47 chr12 21700404 21700723 -122085732 + AluSq SINE Alu 1 305 -8 1925 48 48 37 chr12 21700725 21700994 -122085461 + AluY SINE Alu 39 310 -1 524 334 83 55 chr12 21700994 21701123 -122085332 + HAL1 LINE L1 1269 1433 -1074 348 323 13 7 chr12 21701141 21701296 -122085159 + HAL1 LINE L1 1486 1641 -866 1043 225 81 63 chr12 21701341 21701675 -122084780 + MER2 DNA MER2_type 1 340 -5 1019 201 9 27 chr12 21702477 21702696 -122083759 - MER20 DNA MER1_type -1 218 4 2540 101 13 0 chr12 21703091 21703469 -122082986 - L1PB2 LINE L1 0 6151 5769 5958 90 16 0 chr12 21703489 21704322 -122082133 - L1PA8A LINE L1 -1 6130 5285 261 103 0 0 chr12 21704318 21704357 -122082098 + L1PA8A LINE L1 5224 5262 -884 * 1111 214 97 27 chr12 21704816 21705115 -122081340 + MLT1A1 LTR MaLR 16 335 -30 546 306 90 39 chr12 21705134 21705389 -122081066 + L2 LINE L2 2548 2815 -499 305 232 0 120 chr12 21705494 21705619 -122080836 + L1P LINE L1 3341 3450 -2696 2203 99 7 0 chr12 21705623 21705917 -122080538 - AluSg SINE Alu -14 296 1 1047 253 44 34 chr12 21705928 21706339 -122080116 + L1PA15 LINE L1 3220 3634 -2512 3314 205 12 3 chr12 21706349 21707016 -122079439 + L1PA15 LINE L1 5491 6163 -2 244 288 53 11 chr12 21707051 21707180 -122079275 + L1M4 LINE L1 349 546 -5757 2195 88 0 25 chr12 21707538 21707858 -122078597 - AluSx SINE Alu 0 312 1 1564 271 57 43 chr12 21707955 21708765 -122077690 + L1M4 LINE L1 804 1714 -4589 2482 45 10 19 chr12 21708765 21709078 -122077377 + AluY SINE Alu 2 311 0 1564 271 57 43 chr12 21709078 21709154 -122077301 + L1M4 LINE L1 1714 1787 -4516 810 215 33 9 chr12 21709272 21709486 -122076969 - L1M4c LINE L1 -5066 1318 1100 852 253 18 14 chr12 21709490 21709711 -122076744 - MLT1A1 LTR MaLR 0 365 144 24588 98 7 3 chr12 21709711 21714058 -122072397 - L1PA7 LINE L1 -4 6150 1784 210 162 0 0 chr12 21714431 21714468 -122071987 + T-rich Low_complexity Low_complexity 4 40 0 11970 231 28 33 chr12 21715052 21717600 -122068855 + L1PB3 LINE L1 3 2561 -4309 2057 119 14 0 chr12 21717600 21717893 -122068562 + AluSc SINE Alu 1 297 -12 11970 231 28 33 chr12 21717893 21719962 -122066493 + L1PB3 LINE L1 2561 4638 -2232 1560 197 0 25 chr12 21719962 21720282 -122066173 + AluSx SINE Alu 1 312 0 11970 231 28 33 chr12 21720282 21723429 -122063026 + L1PB3 LINE L1 4638 6863 -7 23 54 0 0 chr12 21724308 21724345 -122062110 + AT_rich Low_complexity Low_complexity 1 37 0 227 315 111 6 chr12 21724562 21724724 -122061731 + HAL1 LINE L1 1483 1661 -846 1001 216 70 63 chr12 21724997 21725284 -122061171 - MLT1A1 LTR MaLR 0 365 77 512 274 37 55 chr12 21725791 21726008 -122060447 + L1M4 LINE L1 2775 2986 -3396 1285 171 0 5 chr12 21726008 21726230 -122060225 + L1PA15 LINE L1 5944 6164 -1 512 274 37 55 chr12 21726230 21726340 -122060115 + L1M4 LINE L1 2986 3096 -3286 23 33 0 0 chr12 21726368 21726398 -122060057 + AT_rich Low_complexity Low_complexity 1 30 0 5766 204 100 75 chr12 21726441 21728414 -122058041 + L1ME3 LINE L1 1 2023 -4403 1412 193 100 0 chr12 21728474 21728743 -122057712 - AluSx SINE Alu -8 304 9 933 170 57 5 chr12 21728756 21728950 -122057505 + L1ME3 LINE L1 2120 2323 -4103 2053 28 4 4 chr12 21729094 21729343 -122057112 + L1PA3 LINE L1 5901 6149 -6 21 0 0 0 chr12 21729344 21729365 -122057090 + AT_rich Low_complexity Low_complexity 1 21 0 2997 249 23 49 chr12 21729406 21729508 -122056947 + L1ME3 LINE L1 2308 2411 -4015 1764 176 42 6 chr12 21729508 21729844 -122056611 + MER7A DNA MER2_type 1 346 0 2997 249 23 49 chr12 21729844 21730878 -122055577 + L1ME3 LINE L1 2411 3406 -3020 2146 92 0 0 chr12 21730878 21731149 -122055306 + AluY SINE Alu 3 273 -38 2997 249 23 49 chr12 21731149 21731375 -122055080 + L1ME3 LINE L1 3406 3636 -2790 * 3235 137 59 21 chr12 21731348 21732020 -122054435 + L1PB1 LINE L1 2354 3052 -3810 375 94 0 0 chr12 21732020 21732073 -122054382 - AluY SINE Alu 0 301 249 1407 67 72 0 chr12 21732073 21732253 -122054202 - AluY SINE Alu -118 193 1 12059 205 33 5 chr12 21732253 21735500 -122050955 + L1PB1 LINE L1 3041 6376 -491 2555 158 23 5 chr12 21735508 21735951 -122050504 + L1PB1 LINE L1 6417 6867 0 339 25 0 0 chr12 21735993 21736033 -122050422 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 86 0 0 chr12 21736237 21736295 -122050160 + AT_rich Low_complexity Low_complexity 1 58 0 2127 127 7 0 chr12 21736393 21736692 -122049763 - AluSg SINE Alu -6 304 4 34203 102 14 11 chr12 21736772 21741836 -122044619 + L1PA6 LINE L1 11 5090 -1056 1047 59 0 0 chr12 21741841 21741976 -122044479 - L1PA6 LINE L1 -7 6147 6013 6511 61 40 1 chr12 21741996 21743030 -122043425 + L1PA6 LINE L1 5084 6151 -3 441 287 32 44 chr12 21743037 21743059 -122043396 + L1ME3 LINE L1 5076 5097 -1765 2189 109 3 3 chr12 21743059 21743361 -122043094 + AluSc SINE Alu 1 302 -7 441 287 32 44 chr12 21743361 21743464 -122042991 + L1ME3 LINE L1 5097 5200 -1662 2417 71 0 0 chr12 21743464 21743761 -122042694 - AluY SINE Alu -14 297 1 441 287 32 44 chr12 21743761 21743925 -122042530 + L1ME3 LINE L1 5200 5363 -1499 307 299 39 91 chr12 21744066 21744297 -122042158 + L1ME3 LINE L1 5511 5729 -1133 611 289 53 24 chr12 21744529 21744915 -122041540 + L1ME3 LINE L1 5985 6383 -503 1026 199 166 14 chr12 21745029 21745306 -122041149 - MSTA LTR MaLR -109 319 1 8134 168 15 48 chr12 21745306 21746939 -122039516 - MSTA-int LTR MaLR 0 1580 3 1752 135 170 22 chr12 21746941 21747312 -122039143 - MSTA LTR MaLR 0 428 3 401 326 53 26 chr12 21747314 21747504 -122038951 + L1ME3 LINE L1 6391 6585 -293 213 324 38 19 chr12 21748201 21748306 -122038149 - L2 LINE L2 -66 3247 3141 420 157 47 6 chr12 21748308 21748480 -122037975 + (TA)n Simple_repeat Simple_repeat 2 180 0 1959 183 45 33 chr12 21748480 21749007 -122037448 - MLT2A2 LTR ERVL -8 546 5 237 101 51 25 chr12 21749007 21749086 -122037369 + (TA)n Simple_repeat Simple_repeat 1 81 0 1399 222 91 63 chr12 21749107 21749535 -122036920 + MLT1D LTR MaLR 6 445 -60 13722 167 55 65 chr12 21749535 21751198 -122035257 + MER4C-int LTR ERV1 1357 3034 -3564 207 0 0 0 chr12 21751198 21751221 -122035234 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 13722 167 55 65 chr12 21751221 21751933 -122034522 + MER4C-int LTR ERV1 3034 3751 -2847 216 97 0 0 chr12 21751933 21751964 -122034491 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13722 167 55 65 chr12 21751964 21754529 -122031926 + MER4C-int LTR ERV1 3751 6429 -169 2597 127 69 5 chr12 21754576 21755008 -122031447 + MER4C LTR ERV1 5 464 -1 27 29 0 0 chr12 21756039 21756073 -122030382 + AT_rich Low_complexity Low_complexity 1 34 0 217 263 40 50 chr12 21756108 21756207 -122030248 - L2 LINE L2 -2 3270 3173 22 56 0 0 chr12 21756655 21756691 -122029764 + AT_rich Low_complexity Low_complexity 1 36 0 312 326 76 15 chr12 21756730 21756862 -122029593 - L1MC/D LINE L1 -1958 5850 5711 17042 142 29 35 chr12 21756865 21757689 -122028766 - L1PA10 LINE L1 -1 6883 6055 2089 84 27 43 chr12 21757689 21757988 -122028467 - AluY SINE Alu -17 294 1 17042 142 29 35 chr12 21757988 21761334 -122025121 - L1PA10 LINE L1 -829 6055 2730 26 64 0 0 chr12 21761435 21761482 -122024973 + AT_rich Low_complexity Low_complexity 1 47 0 29356 106 12 8 chr12 21761482 21766839 -122019616 - L1PA7 LINE L1 -6 6463 1042 14666 145 4 10 chr12 21766841 21769097 -122017358 + HUERS-P3 LTR ERV1 1956 4197 -4722 * 16409 156 8 8 chr12 21769070 21771671 -122014784 + HUERS-P3 LTR ERV1 4311 6912 -2007 1162 206 20 10 chr12 21771890 21772154 -122014301 + HUERS-P3 LTR ERV1 7156 8915 -4 1239 264 56 72 chr12 21772155 21772777 -122013678 + LTR9 LTR ERV1 1 612 0 2193 162 8 5 chr12 21772874 21773546 -122012909 - L1PA10 LINE L1 -5193 1670 850 1964 172 101 35 chr12 21773874 21774328 -122012127 + LTR2B LTR ERV1 7 490 0 32874 108 41 41 chr12 21774328 21781232 -122005223 + Harlequin LTR ERV1 1 6896 0 736 72 0 0 chr12 21781236 21781333 -122005122 - AluYb8 SINE Alu -187 131 35 3581 135 5 27 chr12 21781352 21781876 -122004579 + L1M1 LINE L1 2884 3530 -4035 2335 92 0 20 chr12 21781876 21782182 -122004273 + AluSg SINE Alu 1 300 -10 3581 135 5 27 chr12 21782182 21782397 -122004058 + L1M1 LINE L1 3530 3748 -3817 * 11858 206 41 14 chr12 21782375 21785627 -122000828 + L1PA14 LINE L1 4005 7357 -223 4070 151 29 12 chr12 21785242 21785997 -122000458 + L1MA3 LINE L1 6955 7722 -2 * 1877 146 75 22 chr12 21786555 21786877 -121999578 + MER1B DNA MER1_type 1 339 0 263 247 37 12 chr12 21787108 21787189 -121999266 - L2 LINE L2 -903 2411 2329 230 304 104 9 chr12 21787204 21787319 -121999136 - L2 LINE L2 -2621 693 568 285 304 11 0 chr12 21787640 21787732 -121998723 + MLT1L LTR MaLR 344 436 -179 1729 63 0 0 chr12 21787785 21788086 -121998369 + L1PA5 LINE L1 5934 6234 0 517 211 0 0 chr12 21788141 21788236 -121998219 - FRAM SINE Alu -17 159 65 470 264 90 57 chr12 21788517 21788984 -121997471 + L1MCa LINE L1 19 795 -5627 606 271 81 7 chr12 21789348 21789643 -121996812 + L1MCa LINE L1 1120 1436 -4987 7229 213 20 19 chr12 21790134 21792901 -121993554 + L1PA16 LINE L1 3403 6165 -1 * 9460 210 32 27 chr12 21792888 21797650 -121988805 + L1MA5A LINE L1 3462 6766 -950 821 130 25 56 chr12 21797650 21797812 -121988643 + L1PB2 LINE L1 5993 6149 -2 9460 210 32 27 chr12 21797812 21798520 -121987935 + L1MA5A LINE L1 6766 7469 -247 5262 171 27 18 chr12 21798511 21800132 -121986323 + L1MA6 LINE L1 4654 6285 -15 * 261 83 0 0 chr12 21800287 21800323 -121986132 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr12 21800511 21800545 -121985910 + AT_rich Low_complexity Low_complexity 1 34 0 3972 205 55 31 chr12 21800632 21801628 -121984827 + LTR28 LTR ERV1 1 1020 0 29 0 0 0 chr12 21802003 21802032 -121984423 + AT_rich Low_complexity Low_complexity 1 29 0 8377 225 72 20 chr12 21802954 21804661 -121981794 + L1MCa LINE L1 574 2191 -4235 1531 178 10 50 chr12 21804661 21804959 -121981496 + AluJb SINE Alu 1 286 -26 8377 225 72 20 chr12 21804959 21805315 -121981140 + L1MCa LINE L1 2191 2527 -3899 506 200 118 41 chr12 21805315 21805510 -121980945 - MER6B DNA MER2_type 0 210 1 8377 225 72 20 chr12 21805510 21805748 -121980707 + L1MCa LINE L1 2527 2751 -3675 1238 155 12 139 chr12 21805748 21805903 -121980552 + AluY SINE Alu 1 88 -253 2216 118 0 7 chr12 21805903 21806209 -121980246 + AluSc SINE Alu 1 304 -5 1238 155 12 139 chr12 21806209 21806435 -121980020 + AluY SINE Alu 88 341 0 8377 225 72 20 chr12 21806435 21808765 -121977690 + L1MCa LINE L1 2751 5448 -978 349 222 9 28 chr12 21808782 21808890 -121977565 + L1MC1 LINE L1 4081 4186 -2240 520 210 0 0 chr12 21808890 21808990 -121977465 + FRAM SINE Alu 41 140 -36 180 0 0 0 chr12 21808995 21809015 -121977440 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5183 191 25 36 chr12 21809015 21809254 -121977201 + L1MC1 LINE L1 5441 5681 -932 2437 74 0 26 chr12 21809254 21809565 -121976890 + AluY SINE Alu 3 305 -6 5183 191 25 36 chr12 21809565 21810519 -121975936 + L1MC1 LINE L1 5681 6612 -1 25 31 0 0 chr12 21810571 21810603 -121975852 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr12 21810826 21810863 -121975592 + AT_rich Low_complexity Low_complexity 1 37 0 2019 121 7 7 chr12 21810916 21811213 -121975242 + AluSx SINE Alu 1 297 -15 493 125 42 25 chr12 21811213 21811333 -121975122 + GA-rich Low_complexity Low_complexity 2 123 0 215 360 98 18 chr12 21811333 21811497 -121974958 + L3 LINE CR1 1345 1521 -56 245 279 13 97 chr12 21811570 21811796 -121974659 - L1MC4a LINE L1 -1881 5927 5721 250 200 0 0 chr12 21811805 21811850 -121974605 - L1MC4a LINE L1 -2151 5657 5613 2001 206 71 14 chr12 21812079 21812561 -121973894 - L1MC3 LINE L1 -14 7771 5810 1019 198 198 4 chr12 21812563 21812806 -121973649 + MSTA LTR MaLR 1 290 -138 8688 147 11 72 chr12 21812821 21813733 -121972722 + MSTA-int LTR MaLR 5 971 -609 317 167 0 0 chr12 21813733 21813787 -121972668 + AluSq/x SINE Alu 83 136 -167 852 229 0 0 chr12 21813787 21813953 -121972502 + AluJo/FRAM SINE Alu 137 302 0 8688 147 11 72 chr12 21813953 21814472 -121971983 + MSTA-int LTR MaLR 970 1379 -201 2315 95 0 3 chr12 21814472 21814767 -121971688 - AluY SINE Alu -17 294 1 8688 147 11 72 chr12 21814767 21814958 -121971497 + MSTA-int LTR MaLR 1379 1580 0 1721 168 160 19 chr12 21814959 21815333 -121971122 + MSTA LTR MaLR 2 428 0 1105 226 104 0 chr12 21815341 21815628 -121970827 - L1MC3 LINE L1 -540 5804 5488 1870 156 3 20 chr12 21815636 21815938 -121970517 - AluSx SINE Alu -15 297 1 1167 136 11 5 chr12 21816112 21816296 -121970159 - L1PA15 LINE L1 -112 6053 5869 1792 138 0 0 chr12 21816296 21816578 -121969877 + L1P4 LINE L1 5395 5676 -489 355 355 54 22 chr12 21816932 21817166 -121969289 + MIR SINE MIR 20 262 0 24 32 0 0 chr12 21820465 21820496 -121965959 + AT_rich Low_complexity Low_complexity 1 31 0 196 229 83 0 chr12 21821112 21821160 -121965295 - L2 LINE L2 -6 3266 3215 319 231 90 0 chr12 21821226 21821304 -121965151 + MIR SINE MIR 100 184 -78 2128 148 19 19 chr12 21821596 21821960 -121964495 + THE1B LTR MaLR 1 364 0 11604 98 4 6 chr12 21821960 21823543 -121962912 + THE1B-int LTR MaLR 1 1580 0 1973 138 33 25 chr12 21823543 21823904 -121962551 + THE1B LTR MaLR 1 364 0 2072 331 128 26 chr12 21824871 21826467 -121959988 + L2 LINE L2 107 1865 -1449 11366 218 32 33 chr12 21826475 21828506 -121957949 + L1PB4 LINE L1 907 2937 -3276 2070 142 0 3 chr12 21828506 21828809 -121957646 + AluSx SINE Alu 1 302 -10 11366 218 32 33 chr12 21828809 21832006 -121954449 + L1PB4 LINE L1 2937 6213 0 1724 336 101 31 chr12 21832007 21833407 -121953048 + L2 LINE L2 1833 3313 0 240 269 141 32 chr12 21833935 21834091 -121952364 - L3 LINE CR1 -594 983 811 338 292 64 0 chr12 21834106 21834287 -121952168 + L2 LINE L2 2781 2971 -301 205 241 35 17 chr12 21834622 21834680 -121951775 - L3 LINE CR1 -1079 498 440 26 50 0 0 chr12 21835506 21835546 -121950909 + AT_rich Low_complexity Low_complexity 1 40 0 2066 124 0 7 chr12 21836021 21836319 -121950136 + AluSg SINE Alu 1 296 -14 331 212 53 18 chr12 21837896 21838009 -121948446 + GA-rich Low_complexity Low_complexity 4 120 0 246 306 83 9 chr12 21838209 21838317 -121948138 + MIR3 SINE MIR 89 204 -4 32 67 0 0 chr12 21838503 21838563 -121947892 + AT_rich Low_complexity Low_complexity 1 60 0 193 179 71 36 chr12 21838797 21838853 -121947602 + MIR SINE MIR 110 167 -95 813 89 0 8 chr12 21839403 21839526 -121946929 + AluY SINE Alu 188 309 -2 29 47 0 0 chr12 21840961 21841004 -121945451 + AT_rich Low_complexity Low_complexity 1 43 0 448 312 126 34 chr12 21841124 21841387 -121945068 - L3 LINE CR1 -13 1564 1278 2180 102 3 3 chr12 21841594 21841887 -121944568 + AluSx SINE Alu 1 293 -19 586 154 54 85 chr12 21841993 21842123 -121944332 + MER63 DNA MER1_type 1 752 -84 48 43 0 0 chr12 21842609 21842678 -121943777 + AT_rich Low_complexity Low_complexity 1 69 0 1220 257 112 55 chr12 21843610 21844210 -121942245 + HsTC2a DNA Tc2 11 644 -100 621 335 48 9 chr12 21844216 21844446 -121942009 + L1M3d LINE L1 5 243 -5648 4143 94 19 0 chr12 21844540 21845117 -121941338 + L1PA10 LINE L1 5577 6164 -4 679 298 7 32 chr12 21845129 21845358 -121941097 + L1M3d LINE L1 252 688 -5203 183 42 0 0 chr12 21845358 21845382 -121941073 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 834 304 82 56 chr12 21845385 21845914 -121940541 + L1M3d LINE L1 247 808 -5083 7802 171 48 42 chr12 21845933 21847467 -121938988 + L1MB1 LINE L1 747 2290 -5275 2211 187 14 0 chr12 21847458 21847876 -121938579 + L1MB1 LINE L1 4985 5408 -2157 * 4505 204 16 11 chr12 21847898 21849146 -121937309 + L1MB1 LINE L1 6064 7325 -262 7540 73 15 6 chr12 21849146 21850144 -121936311 + LTR13 LTR ERVK 1 1007 0 4505 204 16 11 chr12 21850144 21850350 -121936105 + L1MB1 LINE L1 7325 7528 -59 513 234 0 0 chr12 21850350 21850444 -121936011 - Tigger2 DNA MER2_type 0 2718 2625 487 148 0 0 chr12 21850467 21850548 -121935907 - L1 LINE L1 -2157 3989 3909 13615 160 33 40 chr12 21850554 21853183 -121933272 - Tigger2 DNA MER2_type -108 2610 1 323 312 0 32 chr12 21853648 21853773 -121932682 + Charlie8 DNA MER1_type 104 224 -2193 370 306 113 19 chr12 21856412 21856952 -121929503 - L1ME4a LINE L1 0 6121 5531 395 211 0 0 chr12 21857361 21857432 -121929023 + MER8 DNA MER2_type 169 239 0 333 0 0 0 chr12 21858088 21858125 -121928330 + (CA)n Simple_repeat Simple_repeat 2 38 0 2558 39 3 0 chr12 21858470 21858775 -121927680 + AluY SINE Alu 1 306 -5 503 302 47 51 chr12 21859308 21859563 -121926892 + MLT1J LTR MaLR 9 262 -249 260 167 0 0 chr12 21859662 21859710 -121926745 + MLT1J LTR MaLR 429 476 -35 195 271 21 0 chr12 21859744 21859792 -121926663 - L2 LINE L2 -1417 1897 1849 22 56 0 0 chr12 21859919 21859955 -121926500 + AT_rich Low_complexity Low_complexity 1 36 0 685 318 73 61 chr12 21860937 21861515 -121924940 + HAL1 LINE L1 831 1415 -1092 429 305 38 9 chr12 21861520 21861733 -121924722 + HAL1 LINE L1 1451 1669 -838 988 183 5 67 chr12 21861766 21861867 -121924588 + MER2 DNA MER2_type 1 82 -263 1712 172 10 3 chr12 21861867 21862170 -121924285 + AluSx SINE Alu 3 307 -5 988 183 5 67 chr12 21862170 21862292 -121924163 + MER2 DNA MER2_type 82 210 -135 56 61 0 0 chr12 21862893 21862991 -121923464 + AT_rich Low_complexity Low_complexity 1 98 0 867 225 14 27 chr12 21863258 21863480 -121922975 - MER20 DNA MER1_type 0 219 1 6613 215 82 87 chr12 21864168 21866249 -121920206 + L1M3 LINE L1 2286 4628 -1543 1248 219 14 28 chr12 21866249 21866532 -121919923 - AluJo SINE Alu -33 279 1 6613 215 82 87 chr12 21866532 21867683 -121918772 + L1M3 LINE L1 4628 5783 -388 1536 113 0 0 chr12 21867682 21867895 -121918560 + L1PA15 LINE L1 5418 5630 -535 * 1671 147 3 93 chr12 21867899 21868143 -121918312 + L1PA15 LINE L1 5837 6042 -123 2117 87 0 11 chr12 21868143 21868468 -121917987 + AluY SINE Alu 1 322 0 1671 147 3 93 chr12 21868468 21868575 -121917880 + L1PA15 LINE L1 6042 6157 -8 2479 264 60 25 chr12 21868581 21868979 -121917476 - L1M4 LINE L1 -1433 4713 4330 306 0 0 0 chr12 21868979 21869013 -121917442 + (TG)n Simple_repeat Simple_repeat 1 34 0 2479 264 60 25 chr12 21869013 21869566 -121916889 - L1M4 LINE L1 -1816 4330 3729 * 4651 199 42 11 chr12 21869563 21870638 -121915817 - L1MC2 LINE L1 0 6842 5735 1672 235 15 30 chr12 21870644 21871112 -121915343 - L1MC2 LINE L1 -4824 1822 1362 1030 251 55 26 chr12 21871123 21871466 -121914989 - MLT1A1 LTR MaLR -11 354 2 22 56 0 0 chr12 21871473 21871509 -121914946 + AT_rich Low_complexity Low_complexity 1 36 0 470 254 0 17 chr12 21871527 21871645 -121914810 - L1MC2 LINE L1 -5825 717 602 22 0 0 0 chr12 21871932 21871954 -121914501 + AT_rich Low_complexity Low_complexity 1 22 0 510 256 108 26 chr12 21872289 21872594 -121913861 + L1ME LINE L1 500 829 -5241 383 145 40 13 chr12 21872648 21872724 -121913731 - L1ME LINE L1 -3774 2306 2229 1624 192 33 3 chr12 21872742 21873101 -121913354 + L1ME LINE L1 2310 2679 -3401 2260 113 7 0 chr12 21873677 21873977 -121912478 - AluSx SINE Alu -10 302 1 601 141 8 16 chr12 21873991 21874112 -121912343 + L1ME LINE L1 2700 2819 -3261 1812 162 3 7 chr12 21874143 21874440 -121912015 - AluSx SINE Alu -16 296 1 343 279 26 7 chr12 21874465 21874619 -121911836 + (TA)n Simple_repeat Simple_repeat 1 157 0 425 349 130 37 chr12 21874648 21874930 -121911525 + HAL1 LINE L1 1219 1562 -945 2251 90 3 3 chr12 21874930 21875218 -121911237 - AluY SINE Alu -16 295 8 425 349 130 37 chr12 21875218 21875397 -121911058 + HAL1 LINE L1 1562 1723 -784 1049 197 128 66 chr12 21875609 21875883 -121910572 - MLT1A1 LTR MaLR 0 365 75 259 269 10 39 chr12 21876389 21876493 -121909962 + L1M4 LINE L1 2539 2639 -3507 2112 117 0 36 chr12 21876531 21876840 -121909615 + AluSg SINE Alu 1 298 -12 1390 127 5 9 chr12 21876936 21877157 -121909298 + L1PA15 LINE L1 5944 6163 -2 6663 227 46 52 chr12 21877371 21878068 -121908387 + L1MCa LINE L1 1 701 -5725 1825 117 4 11 chr12 21878068 21878334 -121908121 + AluSg1 SINE Alu 35 298 -11 6663 227 46 52 chr12 21878334 21879925 -121906530 + L1MCa LINE L1 701 2301 -4125 1667 192 45 3 chr12 21879925 21880259 -121906196 + MER7A DNA MER2_type 1 346 0 6663 227 46 52 chr12 21880259 21880521 -121905934 + L1MCa LINE L1 2301 2563 -3863 521 43 0 0 chr12 21880521 21880591 -121905864 + L1PA4 LINE L1 6083 6152 -3 6663 227 46 52 chr12 21880591 21881784 -121904671 + L1MCa LINE L1 2563 3795 -2631 2328 103 0 0 chr12 21881784 21882095 -121904360 + AluY SINE Alu 1 311 0 6663 227 46 52 chr12 21882095 21882449 -121904006 + L1MCa LINE L1 3795 4150 -2276 2179 163 11 3 chr12 21882478 21882839 -121903616 + THE1B LTR MaLR 1 364 0 6681 131 40 47 chr12 21882839 21884066 -121902389 + THE1B-int LTR MaLR 1 1218 -362 227 99 62 25 chr12 21884180 21884261 -121902194 + (TA)n Simple_repeat Simple_repeat 1 84 0 227 187 16 47 chr12 21884315 21884580 -121901875 + (TA)n Simple_repeat Simple_repeat 1 256 0 535 185 17 22 chr12 21884619 21884797 -121901658 + (TA)n Simple_repeat Simple_repeat 2 178 0 183 118 20 39 chr12 21884813 21884864 -121901591 + (TA)n Simple_repeat Simple_repeat 1 50 0 247 257 20 40 chr12 21884868 21885020 -121901435 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 * 493 189 22 42 chr12 21884956 21885319 -121901136 + (TA)n Simple_repeat Simple_repeat 1 356 0 1116 254 103 35 chr12 21885371 21885800 -121900655 + MLT1D LTR MaLR 6 463 -42 800 273 131 4 chr12 21885851 21886126 -121900329 - L2 LINE L2 -165 3148 2839 769 335 21 10 chr12 21886630 21886890 -121899565 + MIR SINE MIR 2 262 0 23 54 0 0 chr12 21887071 21887108 -121899347 + AT_rich Low_complexity Low_complexity 1 37 0 2277 103 0 0 chr12 21887346 21887648 -121898807 - AluSg SINE Alu -8 302 1 2324 129 85 14 chr12 21888043 21888477 -121897978 + MER4C LTR ERV1 1 465 0 5766 154 127 61 chr12 21888488 21888588 -121897867 + MER4C-int LTR ERV1 1 93 -6505 4240 74 4 0 chr12 21888588 21889140 -121897315 + MER41A LTR ERV1 1 554 0 5766 154 127 61 chr12 21889140 21890047 -121896408 + MER4C-int LTR ERV1 93 938 -5660 342 45 0 0 chr12 21890047 21890091 -121896364 + (TG)n Simple_repeat Simple_repeat 1 44 0 5766 154 127 61 chr12 21890091 21890863 -121895592 + MER4C-int LTR ERV1 938 1657 -4941 2064 130 7 0 chr12 21890863 21891155 -121895300 + AluSg SINE Alu 7 300 -10 5766 154 127 61 chr12 21891155 21891767 -121894688 + MER4C-int LTR ERV1 1657 2485 -4113 14419 168 48 46 chr12 21891768 21892897 -121893558 + MER4C-int LTR ERV1 2846 3971 -2627 2105 147 0 10 chr12 21892897 21893211 -121893244 - AluSx SINE Alu -1 311 1 14419 168 48 46 chr12 21893211 21895824 -121890631 + MER4C-int LTR ERV1 3971 6595 -3 1725 100 30 7 chr12 21895830 21896099 -121890356 + MER4C LTR ERV1 1 275 -190 2564 100 60 21 chr12 21896107 21896538 -121889917 + LTR7 LTR ERV1 1 448 -2 14673 93 22 15 chr12 21896540 21899381 -121887074 + HERVH LTR ERV1 1 2985 -4728 807 144 20 0 chr12 21899377 21899523 -121886932 + HERVH LTR ERV1 3140 3288 -4425 * 3269 101 4 6 chr12 21899515 21900018 -121886437 + HERVH LTR ERV1 3492 3993 -3720 2629 143 8 11 chr12 21900020 21900638 -121885817 + HERVH LTR ERV1 4488 5149 -2564 1127 96 0 6 chr12 21900639 21900817 -121885638 + HERVH LTR ERV1 5600 5776 -1937 2269 79 3 10 chr12 21900836 21901128 -121885327 + AluY SINE Alu 1 290 -21 6377 136 26 7 chr12 21901129 21902659 -121883796 + L1MA1 LINE L1 4739 6302 0 239 292 23 88 chr12 21903138 21903309 -121883146 - L2 LINE L2 -2 3311 3152 29 28 0 0 chr12 21903337 21903373 -121883082 + AT_rich Low_complexity Low_complexity 1 36 0 228 67 0 0 chr12 21903729 21903759 -121882696 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2343 65 0 23 chr12 21903809 21904116 -121882339 - AluY SINE Alu -11 300 1 241 297 191 3 chr12 21904145 21904428 -121882027 - L1MC4a LINE L1 -1866 5942 5607 331 275 22 22 chr12 21904560 21904738 -121881717 + (TA)n Simple_repeat Simple_repeat 2 179 0 2317 250 52 17 chr12 21904813 21905444 -121881011 + MER82 DNA MER2_type 1 653 0 2344 100 3 0 chr12 21906518 21906819 -121879636 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr12 21908732 21908753 -121877702 + AT_rich Low_complexity Low_complexity 1 21 0 252 235 0 0 chr12 21908769 21908837 -121877618 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2574 43 0 3 chr12 21908956 21909255 -121877200 - AluY SINE Alu -13 298 1 216 274 126 52 chr12 21909418 21909553 -121876902 - MER5B DNA MER1_type -30 148 4 214 250 44 44 chr12 21910514 21910582 -121875873 + L2 LINE L2 82 149 -3165 1218 81 0 0 chr12 21910587 21910736 -121875719 + AluY SINE Alu 1 149 -162 4190 125 170 86 chr12 21910738 21912158 -121874297 + pTR5 LTR ERV1 745 2428 -10 1237 89 12 6 chr12 21912158 21912326 -121874129 + AluSg/x SINE Alu 132 300 -12 3660 301 198 25 chr12 21912332 21914595 -121871860 + L2 LINE L2 156 2809 -505 605 301 62 67 chr12 21914611 21915000 -121871455 + L2 LINE L2 2927 3313 0 739 328 102 14 chr12 21915233 21915771 -121870684 + L2 LINE L2 2730 3313 0 245 317 0 24 chr12 21915863 21915945 -121870510 + Charlie2 DNA MER1_type 3 82 -2780 345 240 0 0 chr12 21915955 21916051 -121870404 - L1MA10 LINE L1 -8 6326 6231 308 299 77 5 chr12 21916071 21916292 -121870163 - L1ME2 LINE L1 -128 6036 5800 2273 100 7 0 chr12 21916292 21916593 -121869862 - AluY SINE Alu -8 303 1 835 244 174 36 chr12 21916596 21917146 -121869309 - L1ME2 LINE L1 -816 5330 4705 547 229 57 61 chr12 21917178 21917423 -121869032 - L1ME2 LINE L1 -1939 4207 3964 397 196 72 39 chr12 21917472 21917625 -121868830 + L1M4 LINE L1 3830 3987 -2159 * 930 220 73 0 chr12 21917624 21917883 -121868572 + L1MA4 LINE L1 5986 6263 -37 233 162 29 44 chr12 21917888 21917956 -121868499 + L1M4 LINE L1 3975 4041 -2105 823 214 30 10 chr12 21918245 21918446 -121868009 + MER3 DNA MER1_type 1 205 -4 516 316 128 20 chr12 21918758 21919055 -121867400 - L1ME LINE L1 -389 5732 5404 225 369 97 0 chr12 21920427 21920530 -121865925 + L2 LINE L2 3155 3267 -5 1959 146 3 13 chr12 21920609 21920911 -121865544 + AluSx SINE Alu 2 300 -12 1529 210 22 92 chr12 21920957 21921500 -121864955 + MLT1D LTR MaLR 1 505 0 228 277 15 0 chr12 21921804 21921869 -121864586 + LTR16B LTR ERVL 3 68 -396 591 261 62 23 chr12 21922220 21922367 -121864088 + MIR SINE MIR 14 154 -108 2432 86 0 0 chr12 21922367 21922671 -121863784 + AluY SINE Alu 1 304 -7 216 0 0 0 chr12 21922671 21922695 -121863760 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 261 62 23 chr12 21922695 21922722 -121863733 + MIR SINE MIR 153 196 -66 1107 223 20 13 chr12 21922728 21923028 -121863427 + L1MB7 LINE L1 5858 6165 -1 938 235 48 101 chr12 21923119 21923514 -121862941 + MLT1B LTR MaLR 1 374 -16 1333 178 68 34 chr12 21923533 21923857 -121862598 + MLT1B-int LTR MaLR 4 342 -1029 2109 109 13 7 chr12 21923857 21924159 -121862296 - AluY SINE Alu -7 304 1 1333 178 68 34 chr12 21924159 21924188 -121862267 + MLT1B-int LTR MaLR 342 369 -1002 292 197 15 0 chr12 21924302 21924368 -121862087 + MLT1B-int LTR MaLR 680 746 -989 1005 219 23 0 chr12 21924518 21924733 -121861722 + MLT1B-int LTR MaLR 1321 1540 -195 2859 111 21 74 chr12 21924804 21924991 -121861464 - MER4B LTR ERV1 0 779 584 2252 110 3 0 chr12 21924991 21925291 -121861164 + AluY SINE Alu 1 301 -10 2859 111 21 74 chr12 21925291 21925748 -121860707 - MER4B LTR ERV1 -195 584 1 226 259 0 19 chr12 21925749 21925803 -121860652 - L2 LINE L2 -1051 2263 2211 187 295 9 29 chr12 21925891 21925996 -121860459 - L2 LINE L2 -1230 2084 1982 2417 75 10 0 chr12 21925999 21926307 -121860148 + AluY SINE Alu 1 311 0 15407 170 40 4 chr12 21927242 21931275 -121855180 + L1MA2 LINE L1 17 4239 -3326 1385 127 17 38 chr12 21931314 21931550 -121854905 - THE1B LTR MaLR -2 362 132 7007 113 22 9 chr12 21931550 21932569 -121853886 - THE1B-int LTR MaLR -548 1032 1 1918 169 25 33 chr12 21932569 21932936 -121853519 - THE1B LTR MaLR 0 364 1 6129 153 21 6 chr12 21932936 21934354 -121852101 + L1MA2 LINE L1 6286 7723 0 24536 105 29 32 chr12 21934362 21939245 -121847210 + Harlequin LTR ERV1 17 3395 0 3659 148 2 5 chr12 21939247 21939828 -121846627 + Harlequin LTR ERV1 4396 4974 -3425 526 226 75 0 chr12 21939797 21940076 -121846379 + Harlequin LTR ERV1 842 1141 -5755 * 225 214 29 43 chr12 21941342 21941412 -121845043 + CT-rich Low_complexity Low_complexity 2 70 0 2161 164 92 2 chr12 21941707 21942109 -121844346 - Tigger2 DNA MER2_type -1 2717 2280 422 134 15 0 chr12 21942107 21942174 -121844281 - Tigger2 DNA MER2_type -2649 69 2 * 279 93 0 0 chr12 21942176 21942219 -121844236 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 188 0 42 chr12 21942237 21942285 -121844170 - MLT2D LTR ERVL -125 395 350 751 161 7 0 chr12 21942347 21942484 -121843971 - MLT2D LTR ERVL -263 151 14 484 315 42 15 chr12 21942725 21942985 -121843470 - L1M4 LINE L1 -1368 4778 4512 442 266 37 21 chr12 21943254 21943442 -121843013 - L1M4 LINE L1 -1944 4202 4012 308 197 34 26 chr12 21943485 21943602 -121842853 + MER69 DNA AcHobo 2379 2496 -30 519 206 0 19 chr12 21943603 21943710 -121842745 + FRAM SINE Alu 65 169 -7 331 294 137 41 chr12 21943803 21944000 -121842455 - MLT1L LTR MaLR -179 436 221 627 262 0 0 chr12 21944474 21944663 -121841792 - AluJ SINE Alu 0 345 157 * 663 143 0 84 chr12 21944662 21944781 -121841674 - AluJ SINE Alu -203 109 1 21 0 0 0 chr12 21944787 21944808 -121841647 + AT_rich Low_complexity Low_complexity 1 21 0 473 299 279 30 chr12 21945695 21946233 -121840222 + L2 LINE L2 44 715 -2599 10454 189 26 42 chr12 21946296 21950051 -121836404 - L1MA3 LINE L1 -5 7719 4032 13759 154 43 31 chr12 21950076 21952682 -121833773 - L1MA3 LINE L1 -3824 3741 1104 409 222 65 9 chr12 21952690 21952798 -121833657 - L1MA3 LINE L1 -7436 129 16 1404 164 17 0 chr12 21953675 21953906 -121832549 - L1P3 LINE L1 -6217 244 10 316 259 86 80 chr12 21954118 21954280 -121832175 - MLT1L LTR MaLR -299 168 6 2256 92 3 3 chr12 21954625 21954920 -121831535 - AluSg SINE Alu -15 295 1 336 274 102 32 chr12 21955148 21955305 -121831150 - L1ME LINE L1 -403 5718 5551 6711 165 49 15 chr12 21955992 21957690 -121828765 + L1PBa LINE L1 1690 3478 -3384 7474 25 8 0 chr12 21957690 21958705 -121827750 + L1PA3 LINE L1 5135 6159 0 6711 165 49 15 chr12 21958705 21959182 -121827273 + L1PBa LINE L1 3478 3937 -2925 63 84 0 0 chr12 21959416 21959570 -121826885 + AT_rich Low_complexity Low_complexity 1 154 0 342 298 199 35 chr12 21959599 21959881 -121826574 - L2 LINE L2 -37 3276 2949 659 319 77 50 chr12 21960089 21960465 -121825990 - L2 LINE L2 -1 3312 2927 4229 286 144 45 chr12 21960467 21962974 -121823481 - L2 LINE L2 -491 2823 70 384 319 165 28 chr12 21963306 21963488 -121822967 - MIR SINE MIR -31 231 25 199 356 42 17 chr12 21963984 21964102 -121822353 + MER5A DNA MER1_type 41 161 -28 230 204 0 0 chr12 21964409 21964458 -121821997 + L1MC4 LINE L1 6659 6707 -1335 44031 43 2 1 chr12 21965844 21971995 -121814460 - L1PA4 LINE L1 0 6155 2 25 65 0 0 chr12 21973187 21973233 -121813222 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr12 21973531 21973562 -121812893 + AT_rich Low_complexity Low_complexity 1 31 0 2566 237 51 8 chr12 21973608 21974233 -121812222 - MER82 DNA MER2_type -1 652 1 252 286 200 8 chr12 21974520 21974775 -121811680 + L1MC4a LINE L1 5639 5942 -1866 23 33 0 0 chr12 21975212 21975242 -121811213 + AT_rich Low_complexity Low_complexity 1 30 0 326 331 41 35 chr12 21975291 21975436 -121811019 + L2 LINE L2 3125 3270 -2 22 35 0 0 chr12 21975471 21975500 -121810955 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 21976062 21976091 -121810364 + AT_rich Low_complexity Low_complexity 1 29 0 192 341 73 0 chr12 21976345 21976427 -121810028 - MIR SINE MIR -128 134 47 864 316 19 0 chr12 21977468 21977724 -121808731 - MIR SINE MIR 0 262 2 4894 214 14 3 chr12 21978135 21979227 -121807228 + L1PA15-16 LINE L1 1891 3000 -3849 1442 162 37 68 chr12 21979330 21979626 -121806829 - AluJb SINE Alu -23 289 3 344 360 30 24 chr12 21979636 21979800 -121806655 - L1ME LINE L1 -588 5854 5690 3255 275 35 4 chr12 21979922 21981301 -121805154 - L1ME LINE L1 -2460 3966 2552 10437 83 1 9 chr12 21981309 21983439 -121803016 - L1PA6 LINE L1 -13 6141 3947 9866 98 10 0 chr12 21983439 21984812 -121801643 + L1P3 LINE L1 29 1415 -5046 647 236 0 23 chr12 21984814 21984965 -121801490 - L1ME LINE L1 -4008 2599 2451 1687 195 32 6 chr12 21984965 21985303 -121801152 - MER7A DNA MER2_type -1 345 1 647 236 0 23 chr12 21985303 21985325 -121801130 - L1ME LINE L1 -4156 2451 2430 1737 199 119 9 chr12 21985333 21985786 -121800669 - L1ME LINE L1 -4204 2222 1720 * 5435 204 56 54 chr12 21985784 21987272 -121799183 - L1ME LINE L1 -4915 1511 21 496 296 61 36 chr12 21987338 21987700 -121798755 - L1MDa LINE L1 -3231 2984 2614 319 351 27 11 chr12 21987888 21988076 -121798379 - L1MDa LINE L1 -3846 2369 2179 1598 184 64 50 chr12 21988192 21988550 -121797905 + MLT1A1 LTR MaLR 3 365 0 227 260 13 13 chr12 21988848 21988925 -121797530 - L1MDa LINE L1 -4618 1597 1521 374 298 29 55 chr12 21988968 21989206 -121797249 - L1MDa LINE L1 -4912 1484 1253 254 240 13 67 chr12 21989304 21989454 -121797001 + T-rich Low_complexity Low_complexity 5 146 0 21 0 0 0 chr12 21990290 21990311 -121796144 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 45 0 chr12 21991161 21991205 -121795250 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2499 53 3 0 chr12 21991610 21991909 -121794546 - AluY SINE Alu -11 300 1 23 54 0 0 chr12 21992316 21992353 -121794102 + AT_rich Low_complexity Low_complexity 1 37 0 2031 130 3 0 chr12 21992424 21992716 -121793739 + AluSg SINE Alu 1 293 -17 275 104 21 0 chr12 21992862 21992910 -121793545 + L1MA9 LINE L1 6252 6300 -12 565 253 160 3 chr12 21993189 21993648 -121792807 - MER114 LTR ERV -6 642 88 5951 101 19 16 chr12 21993688 21995690 -121790765 + L1PA14 LINE L1 4183 6161 0 28 35 0 35 chr12 21995726 21995748 -121790707 + AT_rich Low_complexity Low_complexity 1 22 -33 1845 174 0 0 chr12 21995748 21996041 -121790414 + AluSx SINE Alu 14 306 -6 28 35 0 35 chr12 21996041 21996075 -121790380 + AT_rich Low_complexity Low_complexity 22 55 0 289 246 0 73 chr12 21997415 21997525 -121788930 - L1MDa LINE L1 -5476 729 628 1447 191 88 9 chr12 21997525 21997854 -121788601 - MLT1A1 LTR MaLR 0 365 11 210 263 20 101 chr12 21998974 21999073 -121787382 + L2 LINE L2 3178 3268 -4 298 305 79 30 chr12 21999381 21999545 -121786910 + L1MC2 LINE L1 612 990 -5656 * 1813 212 45 27 chr12 21999530 21999567 -121786888 + L1MC2 LINE L1 1323 1358 -5288 1208 244 58 19 chr12 21999567 21999927 -121786528 + MLT1A2 LTR MaLR 1 374 0 1813 212 45 27 chr12 21999927 22000404 -121786051 + L1MC2 LINE L1 1358 1846 -4800 2935 197 24 26 chr12 22000411 22001090 -121785365 + L1MC2 LINE L1 5752 6428 -414 3709 212 51 23 chr12 22001589 22001814 -121784641 - L1MB2 LINE L1 -12 5983 5766 2173 118 0 19 chr12 22001814 22002128 -121784327 - AluSg SINE Alu 0 310 3 3709 212 51 23 chr12 22002128 22003137 -121783318 - L1MB2 LINE L1 -229 5766 4711 1436 271 67 27 chr12 22003133 22003941 -121782514 - L1MB2 LINE L1 -4586 1315 365 * 376 273 114 53 chr12 22004238 22004465 -121781990 - L1MB2 LINE L1 -5650 241 1 807 319 48 69 chr12 22005000 22005662 -121780793 - L2 LINE L2 -119 3194 2547 1217 225 24 78 chr12 22005663 22006045 -121780410 - MLT1A1 LTR MaLR -4 361 1 693 203 94 61 chr12 22006865 22007077 -121779378 + MER20 DNA MER1_type 1 219 0 430 267 103 75 chr12 22007341 22007701 -121778754 - HAL1 LINE L1 -1244 1263 894 2188 77 53 0 chr12 22007781 22008066 -121778389 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 22008232 22008261 -121778194 + AT_rich Low_complexity Low_complexity 1 29 0 195 304 0 43 chr12 22009039 22009108 -121777347 + L2 LINE L2 1832 1897 -1417 482 327 40 5 chr12 22009358 22009557 -121776898 - MLT1J LTR MaLR -300 211 6 250 343 67 29 chr12 22010142 22010247 -121776208 + L2 LINE L2 3175 3283 -30 284 250 0 0 chr12 22011061 22011125 -121775330 + Tigger2 DNA MER2_type 1 64 -2654 239 342 13 0 chr12 22011200 22011276 -121775179 - MER2 DNA MER2_type -268 77 1 328 323 91 32 chr12 22011578 22012077 -121774378 + L1ME4a LINE L1 5527 6064 -57 2228 141 28 0 chr12 22012077 22012431 -121774024 + THE1B LTR MaLR 1 364 0 328 323 91 32 chr12 22012431 22012492 -121773963 + L1ME4a LINE L1 6064 6120 -1 272 284 80 0 chr12 22013450 22013538 -121772917 + L2 LINE L2 3178 3272 0 246 186 16 33 chr12 22014987 22015055 -121771400 - Charlie8 DNA MER1_type -1008 1409 1351 362 296 0 32 chr12 22015130 22015255 -121771200 - Charlie8 DNA MER1_type -2204 213 93 327 177 0 0 chr12 22015668 22015730 -121770725 - L1MB1 LINE L1 -1 5991 5930 1262 189 24 0 chr12 22015730 22015984 -121770471 + Tigger2 DNA MER2_type 3 262 -2456 1331 325 20 47 chr12 22015995 22016628 -121769827 + L1PA13 LINE L1 788 1403 -6171 306 320 10 0 chr12 22016749 22016846 -121769609 + L1PA13 LINE L1 2085 2182 -5399 4900 265 33 25 chr12 22017115 22017220 -121769235 + L1PA13 LINE L1 2203 2306 -5278 1646 189 3 3 chr12 22017220 22017505 -121768950 - AluJb SINE Alu -27 285 1 4900 265 33 25 chr12 22017505 22020123 -121766332 + L1PA13 LINE L1 2306 4992 -2592 12710 178 20 11 chr12 22020160 22022505 -121763950 + Tigger2 DNA MER2_type 251 2615 -103 1277 174 14 5 chr12 22022506 22022724 -121763731 + MSTA LTR MaLR 1 220 -208 3459 175 34 14 chr12 22022739 22023437 -121763018 - L1MB1 LINE L1 -124 5868 5157 1844 127 11 7 chr12 22023465 22023749 -121762706 - AluSx SINE Alu -18 294 10 1243 184 37 52 chr12 22023749 22024016 -121762439 - L1MA8 LINE L1 -11 6280 6017 2455 166 24 11 chr12 22024016 22024468 -121761987 + LTR22A LTR ERVK 1 458 0 1243 184 37 52 chr12 22024468 22024527 -121761928 - L1MA8 LINE L1 -274 6017 5959 1741 152 29 3 chr12 22024540 22024850 -121761605 - L1PB3 LINE L1 -2 6152 5835 252 295 34 13 chr12 22024850 22024999 -121761456 - L1MB1 LINE L1 -825 5145 4994 * 6137 225 48 70 chr12 22024987 22027324 -121759131 - L1MB1 LINE L1 -1327 4643 2357 546 219 10 0 chr12 22027337 22027433 -121759022 - MER2 DNA MER2_type -247 98 2 239 219 24 24 chr12 22027435 22027517 -121758938 - L1MB1 LINE L1 -3615 2355 2274 1170 181 11 67 chr12 22027604 22027803 -121758652 - MSTB-int LTR MaLR -1116 535 353 2266 91 0 3 chr12 22027803 22028100 -121758355 - AluY SINE Alu -15 296 1 1170 181 11 67 chr12 22028100 22028170 -121758285 - MSTB-int LTR MaLR -1298 353 281 1098 83 6 13 chr12 22028170 22028326 -121758129 - AluSp SINE Alu -158 155 1 191 59 0 29 chr12 22028399 22028433 -121758022 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1588 179 11 0 chr12 22028462 22028742 -121757713 - MSTB-int LTR MaLR -1368 283 1 1791 220 59 5 chr12 22028742 22029146 -121757309 - MSTB LTR MaLR 0 426 1 599 302 73 90 chr12 22029148 22029419 -121757036 - L1MB1 LINE L1 -5110 781 507 197 33 33 0 chr12 22029419 22029449 -121757006 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 599 302 73 90 chr12 22029449 22029997 -121756458 - L1MB1 LINE L1 -5384 507 210 603 342 26 4 chr12 22030022 22030250 -121756205 - L1MB1 LINE L1 -5651 240 8 1284 290 82 30 chr12 22030261 22030867 -121755588 - HsTC2a DNA Tc2 -102 642 5 189 238 175 0 chr12 22031526 22031589 -121754866 - L2 LINE L2 -1 3312 3239 326 214 51 86 chr12 22032251 22032368 -121754087 - MER63 DNA MER1_type -309 753 15 378 373 113 0 chr12 22032659 22032906 -121753549 + L3 LINE CR1 1278 1552 -25 202 50 50 25 chr12 22033080 22033120 -121753335 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22033695 22033723 -121752732 + AT_rich Low_complexity Low_complexity 1 28 0 1928 131 3 11 chr12 22033775 22034110 -121752345 - AluSx SINE Alu 0 333 1 215 338 39 0 chr12 22034110 22034187 -121752268 + L2 LINE L2 3234 3313 0 235 244 13 39 chr12 22034207 22034285 -121752170 + L1ME LINE L1 5841 5916 -205 3957 57 0 6 chr12 22035892 22036397 -121750058 + L1PA8 LINE L1 5666 6167 -5 22 0 0 0 chr12 22036818 22036840 -121749615 + AT_rich Low_complexity Low_complexity 1 22 0 276 309 154 44 chr12 22036945 22037081 -121749374 - MIR SINE MIR -100 162 12 247 265 29 0 chr12 22037731 22037799 -121748656 - MIR3 SINE MIR -3 205 136 882 259 25 0 chr12 22038172 22038408 -121748047 + Charlie1 DNA MER1_type 1 242 -2519 451 224 0 40 chr12 22038393 22038518 -121747937 + Charlie1 DNA MER1_type 2624 2743 -18 * 204 204 74 19 chr12 22038537 22038591 -121747864 - MIR SINE MIR -86 176 120 1248 222 116 6 chr12 22038660 22038989 -121747466 - MLT1A1 LTR MaLR 0 365 1 28 79 0 0 chr12 22039201 22039264 -121747191 + AT_rich Low_complexity Low_complexity 1 63 0 230 321 110 37 chr12 22039454 22039563 -121746892 - MIR3 SINE MIR -3 205 89 310 284 11 11 chr12 22039756 22039851 -121746604 + CT-rich Low_complexity Low_complexity 2 96 0 5077 180 20 9 chr12 22041150 22043053 -121743402 - L1PA16 LINE L1 -10 6156 4233 42332 35 22 2 chr12 22043070 22049097 -121737358 - L1PA2 LINE L1 -3 6152 4 3020 221 14 42 chr12 22049101 22049952 -121736503 - L1 LINE L1 -1904 4242 3416 243 61 0 0 chr12 22050139 22050172 -121736283 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 254 352 57 0 chr12 22052131 22052290 -121734165 - L2 LINE L2 -300 2972 2805 252 309 96 34 chr12 22052333 22052511 -121733944 + L3 LINE CR1 818 1006 -571 680 286 98 137 chr12 22052990 22053771 -121732684 - L2 LINE L2 0 3313 2503 1920 147 3 3 chr12 22053771 22054070 -121732385 - AluSx SINE Alu -13 299 1 680 286 98 137 chr12 22054070 22054373 -121732082 - L2 LINE L2 -810 2503 2198 524 247 0 0 chr12 22054373 22054500 -121731955 - FRAM SINE Alu 0 180 54 680 286 98 137 chr12 22054500 22054738 -121731717 - L2 LINE L2 -1115 2198 1952 685 94 9 0 chr12 22054744 22054850 -121731605 + AluSg/x SINE Alu 197 303 -6 2351 201 7 56 chr12 22054850 22055403 -121731052 + L1 LINE L1 3696 4221 -1925 2097 180 50 16 chr12 22055402 22055983 -121730472 + L1P5 LINE L1 5116 5711 -445 * 26 30 0 0 chr12 22056153 22056186 -121730269 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr12 22056382 22056407 -121730048 + (A)n Simple_repeat Simple_repeat 1 25 0 324 120 0 0 chr12 22056407 22056457 -121729998 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr12 22058901 22058937 -121727518 + AT_rich Low_complexity Low_complexity 1 36 0 314 365 66 10 chr12 22058937 22059134 -121727321 - MIR SINE MIR 0 262 55 245 284 0 0 chr12 22059175 22059242 -121727213 + (TA)n Simple_repeat Simple_repeat 2 68 0 3584 179 47 61 chr12 22059723 22060142 -121726313 + L1MC2 LINE L1 5478 5901 -443 1876 163 0 10 chr12 22060142 22060455 -121726000 + AluSg SINE Alu 1 310 0 3584 179 47 61 chr12 22060455 22060903 -121725552 + L1MC2 LINE L1 5901 6333 -11 286 200 12 24 chr12 22060918 22061003 -121725452 + L1MC4 LINE L1 5347 5430 -2378 752 287 15 48 chr12 22061063 22061397 -121725058 + L1MC4 LINE L1 5613 5935 -1873 22 56 0 0 chr12 22061879 22061915 -121724540 + AT_rich Low_complexity Low_complexity 1 36 0 274 167 39 26 chr12 22061987 22062065 -121724390 + (TA)n Simple_repeat Simple_repeat 2 80 0 438 295 48 21 chr12 22062112 22062482 -121723973 - L1MEc LINE L1 -912 1664 1492 1008 242 118 31 chr12 22062482 22062838 -121723617 + MLT1D LTR MaLR 39 425 -80 3304 145 41 3 chr12 22063078 22063664 -121722791 - L1MC1 LINE L1 0 6333 5726 2763 249 17 35 chr12 22063669 22064330 -121722125 - L1M4 LINE L1 -1796 4350 3706 2319 100 3 0 chr12 22064330 22064639 -121721816 - AluSp SINE Alu -3 310 1 2763 249 17 35 chr12 22064639 22064815 -121721640 - L1M4 LINE L1 -2440 3706 3528 3661 58 0 2 chr12 22064832 22065298 -121721157 - L1PA5 LINE L1 0 6154 5690 289 184 58 58 chr12 22065298 22065395 -121721060 + U2 snRNA snRNA 12 108 -80 1156 155 63 38 chr12 22065398 22065637 -121720818 - LTR8-int LTR ERV1 -3672 2274 2030 284 230 23 11 chr12 22065637 22065724 -121720731 - L1MC4 LINE L1 -1340 6702 6615 * 323 202 22 34 chr12 22065646 22065735 -121720720 + L1MC4 LINE L1 6616 6703 -1339 9786 157 53 65 chr12 22065813 22067934 -121718521 - LTR8-int LTR ERV1 -4161 2102 6 3904 143 11 73 chr12 22067939 22068676 -121717779 - LTR8 LTR ERV1 0 691 1 3231 275 26 30 chr12 22068679 22070029 -121716426 - L1P LINE L1 -3126 3020 1676 759 239 36 18 chr12 22070868 22071177 -121715278 - L1MCa LINE L1 -3950 2476 2280 4412 183 104 61 chr12 22071209 22071729 -121714726 - L1MCa LINE L1 -4538 1888 1392 2247 99 0 0 chr12 22071729 22072022 -121714433 - AluSg SINE Alu -17 293 1 4412 183 104 61 chr12 22072022 22072755 -121713700 - L1MCa LINE L1 -5034 1392 580 26 0 0 0 chr12 22072874 22072900 -121713555 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 22073035 22073058 -121713397 + AT_rich Low_complexity Low_complexity 1 23 0 5268 182 11 19 chr12 22073886 22074858 -121711597 - Tigger1 DNA MER2_type -1451 967 3 475 261 73 6 chr12 22074906 22075071 -121711384 + HAL1 LINE L1 2332 2507 0 14076 159 24 6 chr12 22075167 22076889 -121709566 + L1MA1 LINE L1 1093 2874 -4691 207 0 0 0 chr12 22076889 22076912 -121709543 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 14076 159 24 6 chr12 22076912 22077642 -121708813 + L1MA1 LINE L1 2874 3589 -3976 543 192 0 0 chr12 22077646 22077745 -121708710 - MSTA LTR MaLR -4 424 326 12533 190 21 21 chr12 22077747 22081836 -121704619 + L1MA1 LINE L1 3640 7721 0 1877 215 26 11 chr12 22082107 22082484 -121703971 - MSTB LTR MaLR -1 425 43 1993 142 19 9 chr12 22082489 22082812 -121703643 - MER61E LTR ERV1 -4 565 240 2535 52 0 10 chr12 22083963 22084271 -121702184 - AluY SINE Alu -6 305 1 358 241 84 0 chr12 22084404 22084487 -121701968 - MIR SINE MIR -78 184 95 2200 100 0 7 chr12 22084881 22085182 -121701273 + AluSq SINE Alu 1 299 -14 535 174 0 0 chr12 22087778 22087864 -121698591 + AluS SINE Alu 1 86 -227 9551 69 4 2 chr12 22087864 22089135 -121697320 - L1P LINE L1 -1611 4535 3262 357 24 0 0 chr12 22090101 22090143 -121696312 + (TG)n Simple_repeat Simple_repeat 2 43 0 210 204 0 20 chr12 22090149 22090198 -121696257 + (TA)n Simple_repeat Simple_repeat 1 48 0 832 220 20 20 chr12 22090198 22090398 -121696057 - L1M3 LINE L1 -377 5791 5592 * 2394 267 28 13 chr12 22090394 22091097 -121695358 - L1M3 LINE L1 -969 5177 4464 428 92 0 0 chr12 22091099 22091164 -121695291 - L1MA3 LINE L1 0 6305 6241 13335 166 28 56 chr12 22091165 22095901 -121690554 - L1PA11 LINE L1 -137 6273 1988 1803 171 0 3 chr12 22095901 22096193 -121690262 - AluJb SINE Alu -21 291 1 13335 166 28 56 chr12 22096193 22098110 -121688345 - L1PA11 LINE L1 -4422 1988 19 239 288 0 0 chr12 22098229 22098288 -121688167 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr12 22100521 22100551 -121685904 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 22100801 22100825 -121685630 + AT_rich Low_complexity Low_complexity 1 24 0 783 309 223 14 chr12 22101429 22102012 -121684443 + L2 LINE L2 2 706 -2608 208 250 50 25 chr12 22102014 22102094 -121684361 + L2 LINE L2 2330 2411 -903 21 36 0 0 chr12 22103944 22103972 -121682483 + AT_rich Low_complexity Low_complexity 1 28 0 715 315 81 17 chr12 22104093 22104560 -121681895 - L1M3 LINE L1 -2062 4084 3588 385 299 119 40 chr12 22104619 22105014 -121681441 - L1M3 LINE L1 -2615 3531 3106 401 211 35 35 chr12 22105048 22105162 -121681293 - MLT1C LTR MaLR -301 166 53 586 214 13 0 chr12 22105585 22105908 -121680547 + (TA)n Simple_repeat Simple_repeat 1 327 0 506 278 78 67 chr12 22105908 22106768 -121679687 - L1M3 LINE L1 -3127 3019 2151 2236 232 8 23 chr12 22106921 22107446 -121679009 - LTR40a LTR ERVL -2 517 1 928 236 10 5 chr12 22107446 22107645 -121678810 - HERVL40 LTR ERVL 0 5530 5331 366 331 8 15 chr12 22107645 22107775 -121678680 + LTR40a LTR ERVL 256 384 -135 1673 35 0 0 chr12 22109115 22109316 -121677139 + L1PA4 LINE L1 5948 6148 -7 2199 105 0 3 chr12 22109668 22109963 -121676492 + AluSx SINE Alu 1 294 -18 460 331 93 23 chr12 22110037 22110339 -121676116 + L1MC/D LINE L1 4061 4383 -1763 333 0 0 0 chr12 22110397 22110434 -121676021 + (CA)n Simple_repeat Simple_repeat 2 38 0 20747 160 30 18 chr12 22110468 22111589 -121674866 + L1MA2 LINE L1 12 1118 -6606 1823 132 36 33 chr12 22111589 22111923 -121674532 - MER1B DNA MER1_type 0 337 3 20747 160 30 18 chr12 22111923 22115179 -121671276 + L1MA2 LINE L1 1118 4500 -3224 2268 109 0 3 chr12 22115179 22115483 -121670972 + AluSc SINE Alu 1 303 -6 20747 160 30 18 chr12 22115483 22118262 -121668193 + L1MA2 LINE L1 4500 7245 -479 1134 56 0 0 chr12 22118261 22118404 -121668051 + L1PA2 LINE L1 1 143 -6003 * 23834 28 0 0 chr12 22118405 22122034 -121664421 + L1PA2 LINE L1 2528 6155 0 2932 127 12 22 chr12 22122034 22122169 -121664286 + L1MA2 LINE L1 7233 7368 -355 2014 148 3 0 chr12 22122169 22122467 -121663988 + AluSx SINE Alu 1 299 -13 2932 127 12 22 chr12 22122467 22122827 -121663628 + L1MA2 LINE L1 7368 7723 0 38 98 0 0 chr12 22122827 22122949 -121663506 + AT_rich Low_complexity Low_complexity 1 122 0 252 310 8 0 chr12 22123035 22123164 -121663291 + (TA)n Simple_repeat Simple_repeat 2 131 0 375 23 0 0 chr12 22123194 22123238 -121663217 + (TG)n Simple_repeat Simple_repeat 1 44 0 570 196 14 174 chr12 22123250 22123526 -121662929 + MER21B LTR ERV1 17 248 -615 1008 221 98 96 chr12 22123617 22123993 -121662462 + MER21B LTR ERV1 439 815 -48 295 244 0 24 chr12 22124018 22124141 -121662314 + (TATG)n Simple_repeat Simple_repeat 2 121 0 327 293 53 75 chr12 22124293 22124918 -121661537 + L1MC/D LINE L1 4631 5241 -905 241 238 20 69 chr12 22125061 22125162 -121661293 + L1MC/D LINE L1 5384 5479 -865 255 258 22 67 chr12 22125677 22125766 -121660689 - MIR SINE MIR -81 181 97 280 266 0 0 chr12 22125808 22125887 -121660568 + MER116 DNA Mariner 2 80 0 22 35 0 0 chr12 22126140 22126169 -121660286 + AT_rich Low_complexity Low_complexity 1 29 0 1826 132 7 4 chr12 22126592 22126904 -121659551 - AluSx SINE Alu 0 313 1 2314 103 0 0 chr12 22127032 22127334 -121659121 + AluSg SINE Alu 1 302 -8 285 98 0 0 chr12 22127576 22127617 -121658838 + (TA)n Simple_repeat Simple_repeat 1 41 0 265 327 59 0 chr12 22128789 22128890 -121657565 + MIR SINE MIR 100 206 -56 1638 176 30 36 chr12 22130249 22130550 -121655905 - AluJo SINE Alu -11 301 3 395 329 19 19 chr12 22130737 22130895 -121655560 - MER5A DNA MER1_type -31 158 1 533 65 26 0 chr12 22131202 22131279 -121655176 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 325 253 30 30 chr12 22132131 22132230 -121654225 - MER5B DNA MER1_type 0 178 80 319 133 117 0 chr12 22133062 22133122 -121653333 - MIR SINE MIR -79 183 117 571 223 14 58 chr12 22133146 22133285 -121653170 + MER5B DNA MER1_type 46 178 0 228 136 0 0 chr12 22133765 22133809 -121652646 - LTR66 LTR ERVL -173 437 394 300 207 0 46 chr12 22133809 22133896 -121652559 - L1MC4 LINE L1 -1345 6697 6615 189 171 0 0 chr12 22133900 22133935 -121652520 + (TA)n Simple_repeat Simple_repeat 1 35 0 554 201 0 15 chr12 22133958 22134092 -121652363 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 240 306 124 23 chr12 22136178 22136443 -121650012 + L2 LINE L2 1793 2084 -1230 1704 163 7 23 chr12 22136565 22136866 -121649589 - AluSq SINE Alu -17 296 1 1026 120 0 0 chr12 22136866 22136999 -121649456 - AluSq/x SINE Alu -178 135 3 215 122 0 24 chr12 22137129 22137170 -121649285 + (TA)n Simple_repeat Simple_repeat 1 40 0 197 304 27 45 chr12 22138285 22138397 -121648058 - L2 LINE L2 -5 3308 3199 583 254 92 0 chr12 22138782 22138924 -121647531 - MER63A DNA MER1_type -1 209 55 2250 102 0 3 chr12 22140342 22140636 -121645819 - AluSx SINE Alu -19 293 1 286 271 125 105 chr12 22142192 22142543 -121643912 + HAL1 LINE L1 43 400 -2107 3253 267 95 38 chr12 22142679 22144147 -121642308 + HAL1 LINE L1 613 2164 -343 9458 165 76 36 chr12 22144188 22144620 -121641835 - Tigger1 DNA MER2_type -1 2417 2004 2323 65 0 7 chr12 22144620 22144912 -121641543 - AluY SINE Alu -21 290 1 9458 165 76 36 chr12 22144912 22145687 -121640768 - Tigger1 DNA MER2_type -414 2004 1261 1825 143 0 0 chr12 22145687 22145953 -121640502 + AluSx SINE Alu 35 300 -12 9458 165 76 36 chr12 22145953 22146801 -121639654 - Tigger1 DNA MER2_type -1157 1261 279 1423 179 4 48 chr12 22146807 22147075 -121639380 + AluJb SINE Alu 7 262 -50 1542 172 32 4 chr12 22147113 22147392 -121639063 - Tigger1 DNA MER2_type -2129 289 3 1897 131 7 13 chr12 22147440 22147738 -121638717 + AluSx SINE Alu 1 296 -16 1804 100 35 4 chr12 22147740 22148001 -121638454 + AluY SINE Alu 43 311 0 326 225 119 31 chr12 22148018 22148178 -121638277 + HAL1 LINE L1 2334 2507 0 436 358 83 42 chr12 22150301 22150852 -121635603 + L2 LINE L2 1711 2284 -1030 929 202 145 3 chr12 22150885 22151182 -121635273 + Charlie4a DNA MER1_type 169 507 -1 2269 78 14 3 chr12 22152133 22152427 -121634028 - AluY SINE Alu -13 298 2 970 313 68 28 chr12 22153355 22153710 -121632745 + MER70A LTR ERVL 1 369 -103 26 30 0 0 chr12 22153882 22153915 -121632540 + AT_rich Low_complexity Low_complexity 1 33 0 278 368 81 0 chr12 22153944 22154080 -121632375 + L3 LINE CR1 488 634 -943 2043 139 0 0 chr12 22154493 22154806 -121631649 - AluSx SINE Alu 0 315 3 192 77 0 0 chr12 22154899 22154925 -121631530 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 342 274 12 0 chr12 22155966 22156050 -121630405 + L2 LINE L2 3227 3311 -2 669 235 0 15 chr12 22156124 22156260 -121630195 - MLT1A1 LTR MaLR 0 365 232 4147 113 3 21 chr12 22156262 22156883 -121629572 - MER4B LTR ERV1 0 610 1 18455 110 24 9 chr12 22156883 22157286 -121629169 - MER4B-int LTR ERV1 0 6758 6363 1686 173 3 46 chr12 22157286 22157609 -121628846 + AluJb SINE Alu 3 311 -1 18455 110 24 9 chr12 22157609 22159961 -121626494 - MER4B-int LTR ERV1 -395 6363 3960 2416 115 22 3 chr12 22159961 22160318 -121626137 + THE1B LTR MaLR 1 364 0 9269 100 61 69 chr12 22160318 22161911 -121624544 + THE1B-int LTR MaLR 1 1580 0 2366 117 4 8 chr12 22161913 22162266 -121624189 + THE1B LTR MaLR 3 420 -12 11463 139 38 10 chr12 22162860 22164220 -121622235 - MER4B-int LTR ERV1 -2797 3961 2529 1739 179 20 0 chr12 22164220 22164348 -121622107 + AluJb SINE Alu 1 125 -187 207 0 0 0 chr12 22164348 22164371 -121622084 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1739 179 20 0 chr12 22164371 22164543 -121621912 + AluJb SINE Alu 125 307 -5 11463 139 38 10 chr12 22164543 22165152 -121621303 - MER4B-int LTR ERV1 -4229 2529 1938 608 197 160 21 chr12 22165152 22165340 -121621115 - MER4B-int LTR ERV1 -5123 1475 1262 314 189 0 44 chr12 22165386 22165476 -121620979 - MER4B-int LTR ERV1 -5764 834 749 2537 148 132 22 chr12 22165540 22166047 -121620408 - MER4B-int LTR ERV1 -6035 563 1 3473 148 15 26 chr12 22166050 22166665 -121619790 - MER4B LTR ERV1 0 610 3 1001 216 19 14 chr12 22166678 22166891 -121619564 - MLT1A1 LTR MaLR -146 219 6 191 313 60 0 chr12 22166935 22167002 -121619453 + L3 LINE CR1 882 952 -625 372 240 240 0 chr12 22167694 22167819 -121618636 - MIR SINE MIR -2 260 106 230 311 19 0 chr12 22169357 22169463 -121616992 + (TA)n Simple_repeat Simple_repeat 1 108 0 392 258 33 8 chr12 22169811 22169931 -121616524 - L2 LINE L2 -8 3305 3183 720 149 27 34 chr12 22171084 22171232 -121615223 - L1MB1 LINE L1 -13 6155 6009 1495 198 67 60 chr12 22172211 22172631 -121613824 + MER31B LTR ERV1 14 436 -30 269 370 49 12 chr12 22172991 22173153 -121613302 + MIR SINE MIR 95 262 0 489 331 53 7 chr12 22173153 22173304 -121613151 - L2 LINE L2 0 3272 3115 264 317 58 29 chr12 22173405 22173509 -121612946 + MIR SINE MIR 8 114 -148 353 308 60 11 chr12 22173535 22173717 -121612738 - LTR33A LTR ERVL -7 516 326 311 280 43 81 chr12 22173737 22173923 -121612532 - LTR33A LTR ERVL -344 179 1 1038 225 46 0 chr12 22174966 22175184 -121611271 - MIR SINE MIR -4 258 31 249 222 16 0 chr12 22175244 22175307 -121611148 + L1ME4a LINE L1 5952 6015 -106 22 70 0 0 chr12 22176427 22176470 -121609985 + AT_rich Low_complexity Low_complexity 1 43 0 482 253 112 76 chr12 22176817 22177094 -121609361 - L2 LINE L2 -804 2510 2224 253 235 0 94 chr12 22177324 22177409 -121609046 + MIR SINE MIR 186 262 0 23 68 0 0 chr12 22179797 22179841 -121606614 + AT_rich Low_complexity Low_complexity 1 44 0 2062 133 10 0 chr12 22181373 22181681 -121604774 + AluSx SINE Alu 1 311 -1 352 55 36 0 chr12 22181681 22181736 -121604719 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 316 294 79 89 chr12 22181905 22182121 -121604334 + L2 LINE L2 1772 1986 -1328 3099 99 25 8 chr12 22182121 22182597 -121603858 - L1MA1 LINE L1 -5 6297 5814 316 294 79 89 chr12 22182597 22182672 -121603783 + L2 LINE L2 1986 2060 -1254 1568 178 32 3 chr12 22182794 22183103 -121603352 + L1MC1 LINE L1 6011 6328 -5 451 237 67 77 chr12 22183276 22183470 -121602985 + MLT1K LTR MaLR 397 588 0 337 330 184 36 chr12 22183499 22184047 -121602408 + L2 LINE L2 2623 3272 0 552 273 173 74 chr12 22184048 22184564 -121601891 + L1ME4a LINE L1 5423 6007 -114 2439 74 3 10 chr12 22184564 22184874 -121601581 + AluSc SINE Alu 1 308 -1 552 273 173 74 chr12 22184874 22184954 -121601501 + L1ME4a LINE L1 6007 6078 -43 300 308 145 0 chr12 22184995 22185112 -121601343 - MIR SINE MIR -124 138 5 2344 90 0 7 chr12 22185506 22185816 -121600639 + AluSq SINE Alu 4 311 -2 222 150 0 0 chr12 22187482 22187522 -121598933 + (A)n Simple_repeat Simple_repeat 1 40 0 297 280 149 17 chr12 22187966 22188141 -121598314 + MIR SINE MIR 51 248 -14 21 0 0 0 chr12 22189138 22189159 -121597296 + AT_rich Low_complexity Low_complexity 1 21 0 265 286 12 0 chr12 22189198 22189282 -121597173 + L1ME1 LINE L1 5530 5614 -507 339 234 121 8 chr12 22189288 22189412 -121597043 + L1MEd LINE L1 8 145 -5974 351 291 117 25 chr12 22189600 22190036 -121596419 + L1MEd LINE L1 561 1036 -5083 369 284 157 26 chr12 22190068 22190297 -121596158 + MIR SINE MIR 4 262 0 542 289 69 92 chr12 22190300 22191027 -121595428 + L1MEd LINE L1 2093 2802 -3327 1994 182 70 12 chr12 22191116 22191529 -121594926 + MLT1C LTR MaLR 3 439 -28 185 263 105 0 chr12 22191647 22191704 -121594751 + L3 LINE CR1 1502 1564 -13 203 175 25 0 chr12 22192003 22192043 -121594412 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22192527 22192555 -121593900 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 22192649 22192677 -121593778 + AT_rich Low_complexity Low_complexity 1 28 0 468 301 86 93 chr12 22192915 22193357 -121593098 + HAL1 LINE L1 114 552 -1955 349 320 13 45 chr12 22193445 22193601 -121592854 + HAL1 LINE L1 689 839 -1668 1420 60 0 0 chr12 22193605 22193772 -121592683 + AluY SINE Alu 131 297 -14 1174 236 38 40 chr12 22193787 22194160 -121592295 + L1ME1 LINE L1 5629 6000 -166 638 196 12 12 chr12 22194184 22194347 -121592108 + L1MA10 LINE L1 6163 6325 -9 40213 71 7 3 chr12 22194435 22200567 -121585888 + L1PA6 LINE L1 1 6154 0 1330 281 168 28 chr12 22200682 22201707 -121584748 + HAL1 LINE L1 972 2139 -368 650 241 41 36 chr12 22201722 22202088 -121584367 + L1MC5 LINE L1 6894 7233 -728 1518 217 71 35 chr12 22202147 22202741 -121583714 + L1MC5 LINE L1 7260 7843 -118 232 283 64 84 chr12 22202857 22203108 -121583347 + HAL1 LINE L1 2220 2465 -42 24 53 0 0 chr12 22203123 22203161 -121583294 + AT_rich Low_complexity Low_complexity 1 38 0 307 335 124 10 chr12 22203232 22203426 -121583029 + L2 LINE L2 2458 2673 -641 418 272 77 2 chr12 22203436 22203597 -121582858 + MIR SINE MIR 33 203 -45 454 248 20 0 chr12 22203693 22203794 -121582661 - MER5A DNA MER1_type -77 112 10 462 300 62 0 chr12 22204151 22204311 -121582144 + MIR SINE MIR 66 235 -27 2123 35 0 0 chr12 22204338 22204592 -121581863 - L1PA4 LINE L1 0 6155 5902 204 375 31 10 chr12 22204742 22204838 -121581617 + MIR SINE MIR 24 121 -87 2573 154 25 25 chr12 22204863 22205349 -121581106 - MER66B LTR ERV1 0 486 1 2212 113 3 3 chr12 22205734 22206043 -121580412 + AluSp SINE Alu 5 313 0 263 318 0 0 chr12 22206330 22206396 -121580059 + L2 LINE L2 3225 3290 -23 1555 182 27 24 chr12 22208802 22208829 -121577626 - AluJo SINE Alu -12 300 275 210 37 0 0 chr12 22208829 22208856 -121577599 + (TC)n Simple_repeat Simple_repeat 2 28 0 1555 182 27 24 chr12 22208856 22209125 -121577330 - AluJo SINE Alu -37 275 3 1773 187 12 0 chr12 22211408 22211751 -121574704 - L1MB1 LINE L1 -1 6167 5821 23 0 0 0 chr12 22211904 22211927 -121574528 + AT_rich Low_complexity Low_complexity 1 23 0 2371 82 3 0 chr12 22212806 22213100 -121573355 + AluSg SINE Alu 3 297 -13 1591 137 3 109 chr12 22214816 22215137 -121571318 + MER50 LTR ERV1 1 287 -447 5509 147 3 6 chr12 22215137 22215525 -121570930 + L1PB3 LINE L1 5104 5492 -662 2256 107 3 3 chr12 22215525 22215834 -121570621 + AluSc SINE Alu 1 309 0 5509 147 3 6 chr12 22215834 22216499 -121569956 + L1PB3 LINE L1 5492 6154 0 2165 107 7 0 chr12 22216533 22216832 -121569623 + AluSg SINE Alu 9 309 -1 241 355 54 32 chr12 22216850 22216943 -121569512 - MIR SINE MIR -97 111 17 261 329 98 30 chr12 22217762 22217926 -121568529 + L2 LINE L2 3094 3268 -4 27 0 0 0 chr12 22217950 22217977 -121568478 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 22218722 22218759 -121567696 + AT_rich Low_complexity Low_complexity 1 37 0 2382 79 0 0 chr12 22218769 22219074 -121567381 - AluY SINE Alu -6 305 1 270 333 91 38 chr12 22220233 22220365 -121566090 + MIR SINE MIR 88 226 -36 2427 125 6 3 chr12 22220365 22220724 -121565731 + THE1B LTR MaLR 1 360 -4 10131 109 37 37 chr12 22220728 22222308 -121564147 + THE1B-int LTR MaLR 1 1580 0 2346 118 28 3 chr12 22222308 22222663 -121563792 + THE1B LTR MaLR 1 364 0 215 121 61 45 chr12 22223892 22223958 -121562497 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 282 106 0 21 chr12 22223974 22224021 -121562434 + MADE1 DNA Mariner 35 80 0 671 271 19 67 chr12 22226752 22227021 -121559434 + Charlie2 DNA MER1_type 7 262 -2520 2165 222 86 27 chr12 22227308 22228041 -121558414 + Charlie2b DNA MER1_type 1333 2108 -674 1595 158 54 14 chr12 22228281 22228376 -121558079 + AluJb SINE Alu 23 113 -199 225 0 0 0 chr12 22228376 22228401 -121558054 + (CA)n Simple_repeat Simple_repeat 2 26 0 1595 158 54 14 chr12 22228401 22228558 -121557897 + AluJb SINE Alu 113 289 -23 276 30 0 0 chr12 22228558 22228591 -121557864 + (CA)n Simple_repeat Simple_repeat 2 34 0 1595 158 54 14 chr12 22228591 22228616 -121557839 + AluJb SINE Alu 289 312 0 42589 35 21 1 chr12 22229019 22235049 -121551406 + L1PA2 LINE L1 1 6154 -1 383 304 67 35 chr12 22235058 22235176 -121551279 + L1MC/D LINE L1 4068 4181 -1965 23 33 0 0 chr12 22235176 22235206 -121551249 + AT_rich Low_complexity Low_complexity 1 30 0 383 304 67 35 chr12 22235206 22235574 -121550881 + L1MC/D LINE L1 4181 4604 -1542 219 224 12 24 chr12 22235589 22235674 -121550781 + T-rich Low_complexity Low_complexity 2 85 0 425 287 98 68 chr12 22235935 22236537 -121549918 + L1MC/D LINE L1 4881 5495 -768 207 0 0 0 chr12 22237721 22237744 -121548711 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 22238237 22238260 -121548195 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6221 106 26 1 chr12 22238263 22239394 -121547061 - L1PA10 LINE L1 -23 6145 4994 2253 118 52 30 chr12 22239384 22239789 -121546666 + L1PA10 LINE L1 4598 5011 -1135 * 295 233 146 0 chr12 22239856 22239959 -121546496 + MIR SINE MIR 60 177 -85 440 285 49 14 chr12 22239969 22240113 -121546342 - L2 LINE L2 -5 3308 3160 291 104 0 0 chr12 22240168 22240216 -121546239 + (TG)n Simple_repeat Simple_repeat 1 48 0 677 261 143 9 chr12 22240545 22240775 -121545680 - MIR SINE MIR 0 262 2 776 296 110 49 chr12 22241082 22241528 -121544927 - L2 LINE L2 -144 3169 2667 1818 148 16 35 chr12 22241528 22241846 -121544609 + AluJb SINE Alu 1 312 0 776 296 110 49 chr12 22241846 22242022 -121544433 - L2 LINE L2 -646 2667 2503 333 68 0 0 chr12 22242720 22242764 -121543691 + (TG)n Simple_repeat Simple_repeat 1 44 0 694 240 6 34 chr12 22243347 22243526 -121542929 + MER58A DNA MER1_type 12 185 -39 22 0 0 0 chr12 22243527 22243549 -121542906 + AT_rich Low_complexity Low_complexity 1 22 0 748 273 103 75 chr12 22244441 22245697 -121540758 - L1ME3 LINE L1 -306 5925 4617 1628 147 75 18 chr12 22245697 22245976 -121540479 - AluJb SINE Alu -17 295 1 748 273 103 75 chr12 22245976 22246042 -121540413 - L1ME3 LINE L1 -1614 4617 4554 2273 96 3 0 chr12 22246110 22246401 -121540054 + AluSx SINE Alu 3 294 -18 21 36 0 0 chr12 22247088 22247116 -121539339 + AT_rich Low_complexity Low_complexity 1 28 0 1905 121 0 11 chr12 22247236 22247517 -121538938 - AluSx SINE Alu 0 312 35 744 258 22 13 chr12 22248018 22248247 -121538208 + PABL_B LTR ERV1 437 667 0 251 175 0 0 chr12 22248247 22248287 -121538168 - AluSx SINE Alu -262 40 1 246 211 0 0 chr12 22248304 22248356 -121538099 - L1ME3 LINE L1 -3106 3109 3058 414 301 82 50 chr12 22248359 22249054 -121537401 - L1ME3 LINE L1 -3182 3033 2317 328 320 58 13 chr12 22249070 22249226 -121537229 - L1ME3 LINE L1 -4084 2312 2150 320 335 63 37 chr12 22249496 22249845 -121536610 - HAL1 LINE L1 -849 1658 1301 378 323 78 22 chr12 22249851 22250083 -121536372 - L1ME3 LINE L1 -5011 1194 950 21 57 0 0 chr12 22250099 22250134 -121536321 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr12 22250366 22250396 -121536059 + (CA)n Simple_repeat Simple_repeat 1 30 0 581 198 0 0 chr12 22250622 22250723 -121535732 - 7SLRNA srpRNA srpRNA -9 311 211 423 264 107 30 chr12 22250760 22250957 -121535498 + HAL1 LINE L1 1712 1923 -584 856 266 58 54 chr12 22251134 22251619 -121534836 + HAL1 LINE L1 1978 2464 -43 25 65 0 0 chr12 22251636 22251682 -121534773 + AT_rich Low_complexity Low_complexity 1 46 0 2074 133 42 33 chr12 22252410 22252771 -121533684 - THE1B LTR MaLR 0 364 1 663 235 46 7 chr12 22252832 22252985 -121533470 + MER58 DNA MER1_type 1 159 -2261 545 215 0 9 chr12 22252989 22253096 -121533359 + L1MDa LINE L1 21 126 -6414 458 216 93 0 chr12 22253106 22253203 -121533252 + L1MDa LINE L1 250 355 -6185 42757 34 22 1 chr12 22253225 22259244 -121527211 + L1PA2 LINE L1 11 6155 0 908 286 33 94 chr12 22259246 22259701 -121526754 + L2 LINE L2 2058 2484 -830 314 291 8 34 chr12 22259901 22260018 -121526437 - MER94 DNA DNA -19 115 2 630 291 189 25 chr12 22260021 22260706 -121525749 + L2 LINE L2 2507 3313 0 23 0 0 0 chr12 22261191 22261214 -121525241 + AT_rich Low_complexity Low_complexity 1 23 0 739 249 79 84 chr12 22261584 22262038 -121524417 - MLT1J LTR MaLR -49 462 11 1779 181 3 19 chr12 22263223 22263532 -121522923 - AluJo SINE Alu -8 304 1 1535 185 57 26 chr12 22264070 22264403 -121522052 + LTR52 LTR ERVL 1 349 -72 351 44 0 0 chr12 22264403 22264448 -121522007 + (TG)n Simple_repeat Simple_repeat 1 45 0 1535 185 57 26 chr12 22264448 22264498 -121521957 + LTR52 LTR ERVL 349 396 -25 186 393 24 0 chr12 22264710 22264794 -121521661 - L2 LINE L2 -8 3305 3220 1867 171 0 3 chr12 22264997 22265302 -121521153 - AluJb SINE Alu -8 304 1 217 394 87 0 chr12 22265367 22265494 -121520961 - L2 LINE L2 -581 2733 2596 3407 169 83 74 chr12 22266321 22266837 -121519618 + MER63C DNA MER1_type 7 536 -524 3337 62 16 5 chr12 22266837 22267285 -121519170 - L1PA12 LINE L1 0 6168 5716 3407 169 83 74 chr12 22267285 22267684 -121518771 + MER63C DNA MER1_type 536 930 0 746 186 150 0 chr12 22267957 22268124 -121518331 + LTR47A LTR ERVL 261 452 0 182 316 53 21 chr12 22268577 22268672 -121517783 - L2 LINE L2 -1033 2281 2184 561 301 68 9 chr12 22268732 22268951 -121517504 - MIR SINE MIR -25 237 6 216 322 126 82 chr12 22270132 22270474 -121515981 - L2 LINE L2 -52 3220 2864 205 221 15 59 chr12 22271221 22271289 -121515166 + MIR3 SINE MIR 120 184 -24 2018 117 16 10 chr12 22272139 22272448 -121514007 - AluSx SINE Alu -1 311 1 221 298 175 9 chr12 22272817 22272931 -121513524 - L2 LINE L2 -1 3271 3139 183 303 49 56 chr12 22273422 22273496 -121512959 - L2 LINE L2 -1317 1997 1924 770 181 0 23 chr12 22273496 22273629 -121512826 + FLAM_C SINE Alu 2 131 -2 183 303 49 56 chr12 22273629 22273716 -121512739 - L2 LINE L2 -1390 1924 1837 484 98 31 0 chr12 22274554 22274641 -121511814 - L1MA8 LINE L1 -23 6289 6186 2056 160 33 13 chr12 22274641 22275035 -121511420 - L1 LINE L1 -1961 4185 3784 2274 86 0 3 chr12 22275042 22275332 -121511123 - AluY SINE Alu -22 289 1 1127 280 115 20 chr12 22275332 22276246 -121510209 - L1M2c LINE L1 -4557 2541 1534 380 368 6 23 chr12 22276914 22277088 -121509367 - L1M2c LINE L1 -5968 1130 960 253 296 59 7 chr12 22277512 22277664 -121508791 - Charlie7 DNA MER1_type -1 2611 2452 202 267 199 30 chr12 22278119 22278250 -121508205 + MIR SINE MIR 46 198 -64 189 302 0 38 chr12 22278310 22278363 -121508092 - L2 LINE L2 -19 3294 3244 301 277 75 0 chr12 22278549 22278643 -121507812 - MIR SINE MIR -2 260 160 361 117 0 17 chr12 22278643 22278703 -121507752 + Charlie1 DNA MER1_type 2700 2758 -3 376 307 187 4 chr12 22278705 22278946 -121507509 - L2 LINE L2 -2032 1282 998 255 386 111 36 chr12 22279701 22280115 -121506340 - L2 LINE L2 -16 3256 2812 2375 61 3 7 chr12 22280152 22280449 -121506006 + AluY SINE Alu 1 296 -15 1770 151 0 14 chr12 22280651 22280929 -121505526 + AluJo SINE Alu 14 287 -25 23 0 0 0 chr12 22280931 22280954 -121505501 + AT_rich Low_complexity Low_complexity 1 23 0 2272 65 21 10 chr12 22281715 22282005 -121504450 + AluY SINE Alu 2 294 -17 23 0 0 0 chr12 22282870 22282893 -121503562 + AT_rich Low_complexity Low_complexity 1 23 0 2391 63 3 38 chr12 22283859 22284177 -121502278 - AluY SINE Alu -4 307 1 502 284 56 35 chr12 22284816 22285013 -121501442 - MIR SINE MIR -42 220 20 853 28 9 0 chr12 22285262 22285369 -121501086 - L1PA5 LINE L1 -11 6143 6036 665 242 135 6 chr12 22285507 22285685 -121500770 - MIR SINE MIR -54 208 8 33 66 0 0 chr12 22286169 22286230 -121500225 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr12 22286375 22286398 -121500057 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr12 22286454 22286497 -121499958 + AT_rich Low_complexity Low_complexity 1 43 0 245 194 48 48 chr12 22286555 22286617 -121499838 + Charlie8 DNA MER1_type 2356 2417 0 23 54 0 0 chr12 22287189 22287226 -121499229 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 22289373 22289395 -121497060 + AT_rich Low_complexity Low_complexity 1 22 0 200 86 29 0 chr12 22289453 22289488 -121496967 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr12 22289700 22289727 -121496728 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 22289971 22289993 -121496462 + AT_rich Low_complexity Low_complexity 1 22 0 14097 127 57 10 chr12 22290355 22291521 -121494934 - Tigger1 DNA MER2_type 0 2418 1308 2169 126 105 10 chr12 22291521 22291910 -121494545 - MSTA LTR MaLR 0 428 3 14097 127 57 10 chr12 22291910 22293042 -121493413 - Tigger1 DNA MER2_type -1110 1308 12 3983 204 64 11 chr12 22293053 22293837 -121492618 + MER21B LTR ERV1 38 862 -1 248 314 12 23 chr12 22294275 22294361 -121492094 - L2 LINE L2 -5 3308 3224 2113 93 4 7 chr12 22294406 22294730 -121491725 - AluSx SINE Alu 0 327 5 191 355 45 18 chr12 22295434 22295544 -121490911 - MIR SINE MIR -78 130 18 22 0 0 0 chr12 22296998 22297020 -121489435 + AT_rich Low_complexity Low_complexity 1 22 0 717 186 137 0 chr12 22297131 22297314 -121489141 + MER3 DNA MER1_type 1 208 -1 2220 110 0 10 chr12 22297418 22297719 -121488736 + AluSq SINE Alu 3 300 -13 304 349 46 0 chr12 22298574 22298683 -121487772 - MIR SINE MIR -48 214 101 12064 31 31 0 chr12 22298736 22300899 -121485556 - L1PA5 LINE L1 0 6154 3918 1534 95 40 5 chr12 22303276 22303498 -121482957 - MER30 DNA MER1_type 0 230 1 1016 74 74 7 chr12 22303658 22303807 -121482648 - MER30 DNA MER1_type -71 159 1 21 36 0 0 chr12 22304928 22304956 -121481499 + AT_rich Low_complexity Low_complexity 1 28 0 1128 162 118 90 chr12 22306305 22306651 -121479804 - MER41B LTR ERV1 -20 615 260 373 224 35 24 chr12 22307148 22307233 -121479222 + MER7A DNA MER2_type 1 84 -262 278 136 45 0 chr12 22307230 22307274 -121479181 - Alu SINE Alu -11 290 245 * 1547 130 88 4 chr12 22307262 22307523 -121478932 + MER7A DNA MER2_type 66 346 0 498 174 68 45 chr12 22307736 22307868 -121478587 - MLT1D LTR MaLR 0 505 371 639 151 38 88 chr12 22307874 22308033 -121478422 - MLT1E2 LTR MaLR -475 151 1 408 273 30 36 chr12 22310191 22310356 -121476099 + MER103 DNA DNA 3 166 0 376 281 151 50 chr12 22312476 22312675 -121473780 - L2 LINE L2 -189 3083 2865 2250 247 81 5 chr12 22312677 22313260 -121473195 + MLT2E LTR ERVL 1 627 -1 2375 96 0 0 chr12 22313360 22313662 -121472793 - AluSx SINE Alu -10 302 1 376 279 60 60 chr12 22313928 22314111 -121472344 - L2 LINE L2 -3 3310 3128 768 304 109 15 chr12 22314121 22314516 -121471939 - L2 LINE L2 -424 2890 2459 345 225 121 47 chr12 22314539 22314845 -121471610 + LTR50 LTR ERVL 27 410 -385 804 214 134 0 chr12 22314849 22315087 -121471368 + LTR50 LTR ERVL 524 793 -2 29 28 0 0 chr12 22315619 22315655 -121470800 + AT_rich Low_complexity Low_complexity 1 36 0 395 216 0 0 chr12 22317204 22317278 -121469177 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 23 33 0 0 chr12 22317953 22317983 -121468472 + AT_rich Low_complexity Low_complexity 1 30 0 1562 190 103 150 chr12 22318564 22319292 -121467163 + L1MC5 LINE L1 6728 7376 -585 387 91 30 0 chr12 22319292 22319358 -121467097 + L1PA10 LINE L1 6101 6168 0 1562 190 103 150 chr12 22319358 22319863 -121466592 + L1MC5 LINE L1 7376 7903 -58 1646 190 34 0 chr12 22320055 22320381 -121466074 - MER58B DNA MER1_type -4 337 1 2219 115 3 10 chr12 22320668 22320982 -121465473 - AluSx SINE Alu 0 312 1 1180 255 37 12 chr12 22321686 22322005 -121464450 + MLT1A1 LTR MaLR 33 365 0 1225 327 88 17 chr12 22322020 22322769 -121463686 + L2 LINE L2 1746 2547 -767 229 306 28 0 chr12 22322773 22322845 -121463610 + L2 LINE L2 2681 2754 -560 296 319 92 21 chr12 22322952 22323093 -121463362 + L2 LINE L2 2914 3064 -208 946 202 22 0 chr12 22323200 22323383 -121463072 + MER58A DNA MER1_type 37 223 -1 389 236 260 0 chr12 22323391 22323518 -121462937 + MER5A DNA MER1_type 24 183 -6 367 293 111 10 chr12 22323527 22323626 -121462829 + L2 LINE L2 3150 3258 -14 549 109 11 0 chr12 22323711 22323803 -121462652 + L1MA5 LINE L1 6064 6156 -144 993 131 12 0 chr12 22323882 22324042 -121462413 + L1PA16 LINE L1 6000 6161 -5 27 62 0 0 chr12 22324107 22324155 -121462300 + AT_rich Low_complexity Low_complexity 1 48 0 1671 176 0 30 chr12 22324577 22324878 -121461577 + AluJo SINE Alu 6 297 -15 498 300 74 16 chr12 22325837 22326080 -121460375 + MIR SINE MIR 3 259 -3 1348 261 133 24 chr12 22326573 22327120 -121459335 + MLT2F LTR ERVL 57 663 0 346 316 38 15 chr12 22327133 22327266 -121459189 + ERVL-F LTR ERVL 24 159 -5605 7101 282 98 37 chr12 22327454 22327938 -121458517 + ERVL-F LTR ERVL 389 842 -4922 2408 165 21 5 chr12 22327938 22328357 -121458098 - MSTB LTR MaLR 0 426 1 7101 282 98 37 chr12 22328357 22329324 -121457131 + ERVL-F LTR ERVL 842 1748 -4016 2477 66 7 0 chr12 22329324 22329629 -121456826 + AluY SINE Alu 1 307 -4 7101 282 98 37 chr12 22329629 22332922 -121453533 + ERVL-F LTR ERVL 1748 5403 -361 316 213 101 136 chr12 22332980 22333149 -121453306 + ERVL-F LTR ERVL 5539 5701 -63 1416 192 31 3 chr12 22333163 22333454 -121453001 + L1MB4 LINE L1 5882 6180 0 187 290 70 80 chr12 22333977 22334077 -121452378 + MIR SINE MIR 55 153 -55 241 286 89 18 chr12 22334668 22334780 -121451675 + L2 LINE L2 3143 3262 -10 236 295 139 36 chr12 22337241 22337407 -121449048 - MIR SINE MIR -52 210 28 24 32 0 0 chr12 22338176 22338207 -121448248 + AT_rich Low_complexity Low_complexity 1 31 0 555 300 75 25 chr12 22338977 22339217 -121447238 + MIR SINE MIR 4 255 -7 271 306 0 0 chr12 22340052 22340124 -121446331 + L2 LINE L2 3189 3260 -12 25 31 0 0 chr12 22340991 22341023 -121445432 + AT_rich Low_complexity Low_complexity 1 32 0 229 229 0 0 chr12 22341523 22341571 -121444884 - L1MC4 LINE L1 -1339 6703 6656 342 67 0 0 chr12 22342887 22342932 -121443523 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2388 91 7 0 chr12 22343126 22343434 -121443021 + AluSx SINE Alu 1 310 -2 210 328 66 62 chr12 22343471 22343727 -121442728 - L2 LINE L2 -2 3311 3055 4422 175 45 16 chr12 22344910 22345727 -121440728 - MER21B LTR ERV1 -21 842 2 1844 139 33 26 chr12 22346800 22347102 -121439353 + AluJb SINE Alu 1 304 -8 206 357 45 0 chr12 22347124 22347236 -121439219 + MIR SINE MIR 32 148 -60 576 129 0 0 chr12 22347537 22347622 -121438833 - AluJ/FLAM SINE Alu -227 85 1 731 272 6 0 chr12 22347660 22347833 -121438622 + FRAM SINE Alu 1 174 -2 341 274 44 35 chr12 22347848 22347961 -121438494 + L2 LINE L2 3185 3298 -15 25 31 0 0 chr12 22349080 22349112 -121437343 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 22349334 22349364 -121437091 + AT_rich Low_complexity Low_complexity 1 30 0 217 358 25 25 chr12 22352443 22352524 -121433931 - L2 LINE L2 -6 3266 3186 213 208 62 0 chr12 22353642 22353690 -121432765 + L2 LINE L2 3221 3271 -1 2164 109 26 0 chr12 22353736 22354040 -121432415 - AluSq SINE Alu -1 312 1 623 215 171 25 chr12 22356920 22357078 -121429377 + MER5A DNA MER1_type 9 189 0 1644 186 48 23 chr12 22357096 22357450 -121429005 + MLT1A1 LTR MaLR 1 363 -2 315 250 39 0 chr12 22357562 22357666 -121428789 + L2 LINE L2 1564 1671 -1643 274 141 0 90 chr12 22357681 22357759 -121428696 - LTR67 LTR ERVL -14 543 473 * 277 318 103 52 chr12 22357752 22357985 -121428470 - LTR67 LTR ERVL -212 345 101 561 211 0 0 chr12 22358158 22358262 -121428193 + FLAM_C SINE Alu 18 121 -22 747 309 129 67 chr12 22358305 22359114 -121427341 + L2 LINE L2 1750 2608 -706 216 373 31 12 chr12 22359126 22359287 -121427168 + L2 LINE L2 2805 2968 -346 1362 195 39 12 chr12 22359441 22359698 -121426757 + Tigger7 DNA MER2_type 1 264 -2223 356 177 25 25 chr12 22359699 22359778 -121426677 + Tigger7 DNA MER2_type 2490 2568 -19 400 306 25 38 chr12 22359816 22359976 -121426479 + L2 LINE L2 3156 3313 0 306 293 159 71 chr12 22361661 22362152 -121424303 - L1M2 LINE L1 -5847 1002 469 344 279 18 27 chr12 22363181 22363292 -121423163 - MER5A DNA MER1_type -56 133 24 204 332 146 32 chr12 22363285 22363505 -121422950 - L2 LINE L2 -1055 2259 2015 * 21 36 0 0 chr12 22364086 22364114 -121422341 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr12 22364318 22364343 -121422112 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 198 191 0 0 chr12 22366145 22366187 -121420268 + (CA)n Simple_repeat Simple_repeat 2 43 0 197 298 0 18 chr12 22367518 22367575 -121418880 - MIR SINE MIR -66 196 141 2149 125 15 21 chr12 22367769 22368097 -121418358 - MLT1A1 LTR MaLR 0 365 40 432 183 14 0 chr12 22368097 22368168 -121418287 + Tigger5 DNA MER2_type 1 72 -2251 293 246 0 0 chr12 22368173 22368230 -121418225 - Tigger5 DNA MER2_type -6 2317 2261 1815 171 3 19 chr12 22368238 22368669 -121417786 + AluSx SINE Alu 1 426 0 290 182 0 0 chr12 22368675 22368719 -121417736 + Tigger5 DNA MER2_type 2279 2322 -1 299 95 0 0 chr12 22368719 22368761 -121417694 - MLT1A1 LTR MaLR -323 42 1 212 259 0 52 chr12 22368894 22368952 -121417503 - L2 LINE L2 -11 3261 3207 543 296 100 12 chr12 22371362 22371602 -121414853 - MIR SINE MIR 0 262 2 211 250 0 0 chr12 22372086 22372130 -121414325 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 359 368 32 7 chr12 22372843 22372998 -121413457 - L3 LINE CR1 -26 1551 1393 196 232 74 74 chr12 22373713 22373808 -121412647 + MIR SINE MIR 87 181 -81 281 274 36 0 chr12 22374862 22374946 -121411509 + MER5B DNA MER1_type 88 174 -4 1965 140 16 3 chr12 22374999 22375307 -121411148 + AluJb SINE Alu 1 312 0 222 118 0 0 chr12 22375460 22375494 -121410961 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2139 145 3 3 chr12 22375707 22376051 -121410404 - L1PA16 LINE L1 -2 6164 5821 1953 128 7 14 chr12 22376062 22376359 -121410096 - AluSx SINE Alu -17 295 1 914 238 21 21 chr12 22376699 22376939 -121409516 - MIR SINE MIR -21 241 2 2347 45 10 16 chr12 22377584 22377892 -121408563 - L1PA8 LINE L1 -2 6170 5865 2124 130 3 0 chr12 22379170 22379469 -121406986 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr12 22379703 22379725 -121406730 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 27 73 0 0 chr12 22379904 22379959 -121406496 + AT_rich Low_complexity Low_complexity 1 55 0 690 265 93 0 chr12 22380987 22381191 -121405264 + L2 LINE L2 2579 2801 -513 1466 225 52 34 chr12 22381191 22381329 -121405126 + MER63C DNA MER1_type 1 135 -926 3737 144 31 0 chr12 22381329 22381948 -121404507 + L1MC1 LINE L1 5694 6331 -2 1466 225 52 34 chr12 22381948 22382659 -121403796 + MER63C DNA MER1_type 135 926 -5 448 77 15 0 chr12 22382688 22382753 -121403702 + L1MC1 LINE L1 6267 6332 -1 273 211 0 0 chr12 22382758 22382815 -121403640 + MER63 DNA MER1_type 137 193 -868 939 197 14 28 chr12 22382903 22383116 -121403339 - MER63 DNA MER1_type -297 763 554 1869 252 36 4 chr12 22383403 22384320 -121402135 - L1MC4 LINE L1 -221 7821 6712 360 0 0 0 chr12 22384324 22384364 -121402091 + (CA)n Simple_repeat Simple_repeat 2 41 0 2067 115 3 3 chr12 22384670 22384958 -121401497 + AluSx SINE Alu 1 288 -24 1259 26 0 0 chr12 22385096 22385248 -121401207 - L1PA3 LINE L1 -92 6063 5912 187 351 0 0 chr12 22386077 22386151 -121400304 + MIR SINE MIR 168 241 -21 236 397 11 39 chr12 22386729 22386908 -121399547 + L2 LINE L2 2909 3082 -190 491 248 124 51 chr12 22386992 22387054 -121399401 - MIR SINE MIR -6 256 200 951 182 0 0 chr12 22387054 22387208 -121399247 - FRAM SINE Alu -12 154 1 491 248 124 51 chr12 22387208 22387388 -121399067 - MIR SINE MIR -62 200 5 188 67 33 0 chr12 22387780 22387810 -121398645 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 158 6 0 chr12 22388100 22388271 -121398184 + GA-rich Low_complexity Low_complexity 4 175 0 719 276 43 5 chr12 22388276 22388486 -121397969 + LTR16B LTR ERVL 240 457 -7 2080 181 76 9 chr12 22389462 22389894 -121396561 + LOR1b LTR ERV1 1 461 0 231 362 92 43 chr12 22390051 22390169 -121396286 + L2 LINE L2 2043 2154 -1160 1745 159 34 7 chr12 22390169 22390465 -121395990 - AluJb SINE Alu -8 304 1 231 362 92 43 chr12 22390465 22390791 -121395664 + L2 LINE L2 2154 2509 -805 290 312 43 32 chr12 22391220 22391313 -121395142 + L2 LINE L2 3159 3252 -20 2265 96 0 3 chr12 22391612 22391904 -121394551 + AluSg SINE Alu 1 291 -19 3954 141 30 64 chr12 22391904 22392706 -121393749 + Ricksha_b DNA DNA 293 1067 -187 839 152 89 11 chr12 22392764 22392955 -121393500 + Ricksha_b DNA DNA 1433 1638 -8 26 50 0 0 chr12 22394843 22394883 -121391572 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 22395254 22395292 -121391163 + AT_rich Low_complexity Low_complexity 1 38 0 268 284 18 9 chr12 22395994 22396103 -121390352 + L1MC5 LINE L1 7784 7893 -68 29 28 0 0 chr12 22396674 22396710 -121389745 + AT_rich Low_complexity Low_complexity 1 36 0 320 363 117 0 chr12 22397096 22397267 -121389188 - MIR SINE MIR -20 242 52 189 0 0 0 chr12 22398712 22398733 -121387722 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr12 22399556 22399576 -121386879 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 22400320 22400342 -121386113 + AT_rich Low_complexity Low_complexity 1 22 0 644 285 92 4 chr12 22400494 22400722 -121385733 - MIR SINE MIR -12 250 3 1662 106 0 0 chr12 22401087 22401304 -121385151 + AluSg/x SINE Alu 85 301 -11 21 36 0 0 chr12 22401472 22401500 -121384955 + GC_rich Low_complexity Low_complexity 1 28 0 303 246 30 52 chr12 22401593 22401727 -121384728 + C-rich Low_complexity Low_complexity 2 132 0 2366 88 0 0 chr12 22402283 22402580 -121383875 - AluSg1 SINE Alu -12 297 1 261 238 0 69 chr12 22402632 22402733 -121383722 + LTR67 LTR ERVL 464 557 0 218 365 157 18 chr12 22402961 22403470 -121382985 + L2 LINE L2 1589 2168 -1146 445 253 82 78 chr12 22403506 22403763 -121382692 + MIR SINE MIR 5 262 0 21 36 0 0 chr12 22404391 22404419 -121382036 + AT_rich Low_complexity Low_complexity 1 28 0 193 271 0 21 chr12 22405413 22405461 -121380994 - L2 LINE L2 -2 3270 3224 483 278 96 37 chr12 22406574 22406761 -121379694 - MIR SINE MIR -28 234 37 266 369 56 34 chr12 22407423 22407656 -121378799 - L2 LINE L2 -391 2923 2686 * 396 287 23 8 chr12 22407651 22407780 -121378675 + MIR SINE MIR 132 262 0 429 256 186 0 chr12 22408043 22408242 -121378213 - L1MCc LINE L1 -4900 1523 1288 2145 104 0 3 chr12 22408458 22408757 -121377698 + AluSc SINE Alu 1 298 -11 270 333 19 9 chr12 22410032 22410140 -121376315 - MIR3 SINE MIR -3 205 97 23 33 0 0 chr12 22411419 22411449 -121375006 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 22411501 22411536 -121374919 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 22411848 22411869 -121374586 + AT_rich Low_complexity Low_complexity 1 21 0 302 248 16 27 chr12 22412242 22412333 -121374122 - MER5A DNA MER1_type 0 189 92 21 0 0 0 chr12 22413735 22413756 -121372699 + AT_rich Low_complexity Low_complexity 1 21 0 182 138 0 0 chr12 22414070 22414099 -121372356 - L2 LINE L2 -16 3297 3269 216 354 133 54 chr12 22414691 22415958 -121370497 + L2 LINE L2 665 2032 -1282 1887 204 112 7 chr12 22415960 22416120 -121370335 - MLT1D LTR MaLR -9 496 354 2181 123 0 22 chr12 22416120 22416437 -121370018 - AluSq SINE Alu -3 310 1 1887 204 112 7 chr12 22416437 22416703 -121369752 - MLT1D LTR MaLR -151 354 25 259 312 199 16 chr12 22416847 22417033 -121369422 + L2 LINE L2 2197 2416 -898 1256 217 112 43 chr12 22417958 22418378 -121368077 + LTR2 LTR ERV1 1 449 0 194 329 13 0 chr12 22418593 22418672 -121367783 + MIR SINE MIR 92 171 -91 807 229 50 0 chr12 22418708 22418948 -121367507 + L1PB4 LINE L1 5073 5324 -822 2891 113 12 0 chr12 22418950 22419357 -121367098 + MLT2A2 LTR ERVL 1 412 -41 205 178 0 0 chr12 22419358 22419403 -121367052 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 272 115 77 0 chr12 22419406 22419458 -121366997 + MLT2A2 LTR ERVL 465 520 0 2734 71 0 0 chr12 22419458 22419811 -121366644 + HERVL-A2 LTR ERVL 1 353 -5301 * 22678 78 21 6 chr12 22419805 22422785 -121363670 + HERVL-A2 LTR ERVL 2629 5654 0 3326 86 11 11 chr12 22422785 22423197 -121363258 + MLT2A2 LTR ERVL 1 415 -38 405 0 0 0 chr12 22423197 22423242 -121363213 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3326 86 11 11 chr12 22423242 22423282 -121363173 + MLT2A2 LTR ERVL 414 453 0 4640 153 6 25 chr12 22423282 22424103 -121362352 + L1PB4 LINE L1 5322 6128 -28 2616 113 11 3 chr12 22424103 22424475 -121361980 + THE1C LTR MaLR 1 375 0 4640 153 6 25 chr12 22424475 22424500 -121361955 + L1PB4 LINE L1 6128 6152 -4 23 0 0 0 chr12 22424500 22424523 -121361932 + AT_rich Low_complexity Low_complexity 1 23 0 14225 193 28 22 chr12 22426223 22431852 -121354603 + L1M2 LINE L1 2 5660 -1188 451 131 36 48 chr12 22431856 22431940 -121354515 + MSTB LTR MaLR 1 83 -343 1308 271 8 0 chr12 22431940 22432305 -121354150 + L1MA4A LINE L1 22 389 -6474 2368 166 45 4 chr12 22432337 22432847 -121353608 + L1MA4A LINE L1 2846 3477 -3385 4408 215 6 1 chr12 22432849 22433790 -121352665 + L1MA4A LINE L1 4173 5118 -1744 6031 145 28 9 chr12 22433802 22435126 -121351329 + L1MA4A LINE L1 5674 7016 -3 362 106 0 15 chr12 22435825 22435891 -121350564 + (TC)n Simple_repeat Simple_repeat 2 66 0 191 167 24 0 chr12 22435890 22435932 -121350523 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 620 285 106 10 chr12 22436633 22436840 -121349615 - MIR SINE MIR -3 259 33 1522 198 3 29 chr12 22436892 22437205 -121349250 - AluJo SINE Alu -7 305 1 414 309 161 38 chr12 22438181 22438634 -121347821 + L2 LINE L2 2804 3312 -1 21 0 0 0 chr12 22438668 22438689 -121347766 + AT_rich Low_complexity Low_complexity 1 21 0 287 292 195 0 chr12 22439068 22439181 -121347274 + MIR3 SINE MIR 42 176 -32 287 238 0 16 chr12 22439465 22439528 -121346927 - L2 LINE L2 -4 3309 3248 200 231 319 0 chr12 22439541 22439632 -121346823 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 22440924 22440966 -121345489 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 22440985 22441006 -121345449 + AT_rich Low_complexity Low_complexity 1 21 0 548 213 90 0 chr12 22442692 22442814 -121343641 + FLAM_A SINE Alu 1 133 0 25 31 0 0 chr12 22442814 22442846 -121343609 + AT_rich Low_complexity Low_complexity 1 32 0 211 283 163 11 chr12 22443317 22443409 -121343046 + MIR SINE MIR 71 177 -31 357 24 0 0 chr12 22443903 22443945 -121342510 + (TA)n Simple_repeat Simple_repeat 1 42 0 692 279 154 36 chr12 22444786 22445291 -121341164 - L2 LINE L2 -4 3309 2726 197 439 75 47 chr12 22445641 22446001 -121340454 - L2 LINE L2 -89 3183 2814 21 57 0 0 chr12 22446050 22446085 -121340370 + AT_rich Low_complexity Low_complexity 1 35 0 182 379 0 0 chr12 22446261 22446319 -121340136 - L2 LINE L2 -601 2713 2656 377 294 149 49 chr12 22446630 22446980 -121339475 - L2 LINE L2 -678 2636 2252 349 211 166 51 chr12 22447095 22447270 -121339185 + Charlie8 DNA MER1_type 27 221 -2196 306 56 0 0 chr12 22447653 22447689 -121338766 + U2 snRNA snRNA 1 36 -152 28 48 0 0 chr12 22447874 22447916 -121338539 + AT_rich Low_complexity Low_complexity 1 42 0 2796 10 0 3 chr12 22448055 22448364 -121338091 + AluYb8 SINE Alu 1 308 -10 339 222 67 0 chr12 22448416 22448506 -121337949 + MIR SINE MIR 133 228 -34 2177 116 3 0 chr12 22448932 22449300 -121337155 + AluSp SINE Alu 1 369 0 438 309 110 56 chr12 22452654 22452830 -121333625 - L1M4 LINE L1 -1579 4567 4402 1662 164 0 48 chr12 22452830 22453141 -121333314 - AluJo SINE Alu -16 296 1 438 309 110 56 chr12 22453141 22453283 -121333172 - L1M4 LINE L1 -1744 4402 4269 2140 124 0 0 chr12 22453283 22453582 -121332873 - AluSg SINE Alu -11 299 1 438 309 110 56 chr12 22453582 22453708 -121332747 - L1M4 LINE L1 -1877 4269 4098 645 196 0 33 chr12 22453918 22454102 -121332353 + CT-rich Low_complexity Low_complexity 2 179 0 309 305 94 8 chr12 22454105 22454233 -121332222 + L2 LINE L2 3134 3272 0 2179 107 3 13 chr12 22454384 22454692 -121331763 - AluSq SINE Alu -8 305 1 931 269 29 0 chr12 22454959 22455197 -121331258 - MIR SINE MIR -8 254 10 747 298 160 20 chr12 22455223 22455690 -121330765 + L2 LINE L2 2511 3060 -212 2431 38 21 0 chr12 22456381 22456668 -121329787 + AluY SINE Alu 1 293 -18 218 299 63 116 chr12 22456951 22457235 -121329220 + L2 LINE L2 2990 3258 -14 1882 136 39 0 chr12 22457692 22457978 -121328477 - AluJb SINE Alu -15 297 1 38613 81 7 14 chr12 22458018 22459269 -121327186 - L1PA6 LINE L1 -5 6149 4892 2883 3 0 0 chr12 22459269 22459578 -121326877 - AluYa5 SINE Alu -2 309 1 38613 81 7 14 chr12 22459578 22464486 -121321969 - L1PA6 LINE L1 -1262 4892 11 194 250 21 21 chr12 22464626 22464674 -121321781 - L2 LINE L2 -10 3262 3215 21 0 0 0 chr12 22464728 22464749 -121321706 + AT_rich Low_complexity Low_complexity 1 21 0 1155 290 79 16 chr12 22466196 22466765 -121319690 - L1MC4a LINE L1 -1908 5900 5296 1982 140 3 13 chr12 22466792 22467092 -121319363 + AluSx SINE Alu 1 297 -15 1625 172 18 4 chr12 22467096 22467369 -121319086 + AluJo SINE Alu 1 277 -35 21 57 0 0 chr12 22467375 22467410 -121319045 + AT_rich Low_complexity Low_complexity 1 35 0 2370 165 7 39 chr12 22468092 22468529 -121317926 - MSTB LTR MaLR 0 426 4 206 379 74 0 chr12 22468551 22468646 -121317809 + L2 LINE L2 3164 3265 -7 189 245 38 38 chr12 22468977 22469030 -121317425 + MIR SINE MIR 21 73 -135 411 21 0 0 chr12 22469041 22469089 -121317366 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 685 318 107 39 chr12 22469099 22469583 -121316872 + MLT1K LTR MaLR 26 542 -46 581 184 118 66 chr12 22470018 22470230 -121316225 - MLT1J LTR MaLR 0 511 289 1961 110 18 0 chr12 22470743 22471015 -121315440 - AluSc SINE Alu -31 278 2 653 237 163 37 chr12 22471016 22471142 -121315313 + MIR SINE MIR 20 129 -133 805 192 61 42 chr12 22471142 22471356 -121315099 + MER20 DNA MER1_type 1 218 -1 653 237 163 37 chr12 22471356 22471444 -121315011 + MIR SINE MIR 129 261 -1 594 265 61 43 chr12 22471438 22471668 -121314787 - MIR SINE MIR -27 235 2 * 636 225 0 0 chr12 22472548 22472677 -121313778 + FRAM SINE Alu 39 167 -9 26 64 0 0 chr12 22473389 22473436 -121313019 + AT_rich Low_complexity Low_complexity 1 47 0 339 251 316 18 chr12 22474020 22474191 -121312264 + MIR SINE MIR 34 255 -7 319 368 44 28 chr12 22474458 22474640 -121311815 + MIR3 SINE MIR 1 185 -23 371 329 33 13 chr12 22476117 22476269 -121310186 + MIR3 SINE MIR 23 177 -31 423 235 178 56 chr12 22476345 22476558 -121309897 - MIR SINE MIR -8 254 16 48 67 0 0 chr12 22476851 22476941 -121309514 + AT_rich Low_complexity Low_complexity 1 90 0 37 62 0 0 chr12 22477043 22477108 -121309347 + AT_rich Low_complexity Low_complexity 1 65 0 21 71 0 0 chr12 22477248 22477290 -121309165 + AT_rich Low_complexity Low_complexity 1 42 0 4101 225 82 20 chr12 22477400 22478656 -121307799 + L1MC4 LINE L1 6708 8041 -1 198 311 0 16 chr12 22479225 22479286 -121307169 + MIR3 SINE MIR 148 207 -1 231 61 0 0 chr12 22481202 22481235 -121305220 + (A)n Simple_repeat Simple_repeat 1 33 0 386 297 21 48 chr12 22481541 22481686 -121304769 + MIR SINE MIR 122 262 0 6263 113 12 33 chr12 22481719 22482709 -121303746 + LTR5 LTR ERVK 1 969 0 1888 100 0 57 chr12 22484467 22484747 -121301708 - AluSx SINE Alu -21 291 28 236 258 15 0 chr12 22484819 22484885 -121301570 + MIR3 SINE MIR 138 204 -4 888 211 84 40 chr12 22485036 22485263 -121301192 + MER8 DNA MER2_type 1 237 -2 2083 136 0 0 chr12 22486587 22486882 -121299573 + AluSx SINE Alu 1 295 -17 414 0 0 0 chr12 22486883 22486929 -121299526 + (CA)n Simple_repeat Simple_repeat 2 47 0 549 324 83 6 chr12 22487589 22487901 -121298554 - L2 LINE L2 -87 3226 2891 265 290 112 37 chr12 22488076 22488183 -121298272 - L2 LINE L2 -557 2757 2643 210 171 0 0 chr12 22488340 22488375 -121298080 + MIR SINE MIR 61 95 -167 290 328 94 0 chr12 22489073 22489203 -121297252 + MIR SINE MIR 37 176 -74 372 216 69 10 chr12 22490002 22490104 -121296351 + L1MC4 LINE L1 7745 7852 -190 801 108 39 46 chr12 22490140 22490270 -121296185 + MER1B DNA MER1_type 211 339 0 262 125 25 0 chr12 22490287 22490327 -121296128 + L1MC4 LINE L1 7851 7891 -151 259 289 0 10 chr12 22490332 22490436 -121296019 + (TA)n Simple_repeat Simple_repeat 1 103 0 355 282 14 28 chr12 22490437 22490579 -121295876 + L1MC4 LINE L1 7902 8041 -1 * 1777 254 69 26 chr12 22490574 22491223 -121295232 + L1MC4 LINE L1 7225 7901 -141 2169 123 7 0 chr12 22491618 22491920 -121294535 + AluSc SINE Alu 1 304 -5 2594 36 0 3 chr12 22494935 22495242 -121291213 - AluY SINE Alu -5 306 1 394 231 169 39 chr12 22496760 22496890 -121289565 - L2 LINE L2 -5 3308 3162 4370 137 32 33 chr12 22498123 22499506 -121286949 + pTR5 LTR ERV1 741 2438 0 2076 102 0 46 chr12 22500060 22500185 -121286270 + AluY SINE Alu 21 150 -161 2234 116 0 0 chr12 22500185 22500488 -121285967 + AluSg SINE Alu 1 303 -7 2076 102 0 46 chr12 22500488 22500666 -121285789 + AluY SINE Alu 150 310 -1 652 196 14 14 chr12 22501057 22501195 -121285260 - MIR SINE MIR -55 207 70 285 29 0 0 chr12 22501196 22501230 -121285225 + (TC)n Simple_repeat Simple_repeat 2 35 0 2068 117 0 44 chr12 22501239 22501555 -121284900 - AluSx SINE Alu -10 302 1 259 309 87 25 chr12 22501586 22501789 -121284666 - L1ME LINE L1 -336 5826 5609 2269 70 9 70 chr12 22502272 22502600 -121283855 + AluSg SINE Alu 1 308 -2 2958 123 9 5 chr12 22502727 22503159 -121283296 - MER57B LTR ERV1 0 434 1 690 266 23 5 chr12 22503186 22503400 -121283055 - L1MD3 LINE L1 -1 7994 7777 21 36 0 0 chr12 22503480 22503508 -121282947 + AT_rich Low_complexity Low_complexity 1 28 0 777 186 0 8 chr12 22504056 22504185 -121282270 - FLAM_C SINE Alu -5 128 1 201 244 44 0 chr12 22504255 22504300 -121282155 - L2 LINE L2 -16 3297 3251 753 292 17 38 chr12 22504921 22505161 -121281294 - MIR SINE MIR -26 236 2 882 122 0 81 chr12 22505307 22505479 -121280976 - MER50 LTR ERV1 -80 654 497 4437 152 71 53 chr12 22505524 22505709 -121280746 + Ricksha_b DNA DNA 1 181 -2673 2272 99 0 3 chr12 22505709 22506001 -121280454 + AluSg SINE Alu 1 291 -19 4437 152 71 53 chr12 22506001 22506802 -121279653 + Ricksha_b DNA DNA 181 1067 -187 875 152 89 11 chr12 22506860 22507051 -121279404 + Ricksha_b DNA DNA 1441 1646 -8 1211 253 156 12 chr12 22508048 22508554 -121277901 - L1M4 LINE L1 -1974 4172 3594 252 286 32 16 chr12 22508562 22508688 -121277767 - L1MEc LINE L1 -5627 769 642 440 327 66 7 chr12 22508855 22509127 -121277328 - L1MEc LINE L1 -6017 379 92 370 316 8 8 chr12 22509391 22509508 -121276947 - MER5A DNA MER1_type -72 117 1 213 362 64 0 chr12 22509675 22509769 -121276686 + MIR SINE MIR 38 137 -125 4340 104 172 127 chr12 22510014 22510884 -121275571 - pTR5 LTR ERV1 0 2438 1609 315 0 0 0 chr12 22510884 22510919 -121275536 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4340 104 172 127 chr12 22510919 22511397 -121275058 - pTR5 LTR ERV1 -829 1609 741 3876 166 104 18 chr12 22511519 22512256 -121274199 + MER21B LTR ERV1 1 801 -62 333 176 48 168 chr12 22512256 22512381 -121274074 + MER21B LTR ERV1 754 863 0 204 125 0 0 chr12 22512469 22512501 -121273954 + (TCC)n Simple_repeat Simple_repeat 3 34 0 206 368 11 11 chr12 22513157 22513252 -121273203 + L2 LINE L2 2253 2347 -967 328 252 159 0 chr12 22513800 22513907 -121272548 - L2 LINE L2 -2 3270 3147 3298 107 29 78 chr12 22513913 22514539 -121271916 + LTR1 LTR ERV1 1 595 -190 445 151 0 14 chr12 22514532 22514605 -121271850 + LTR1 LTR ERV1 714 785 0 * 372 152 0 0 chr12 22515149 22515215 -121271240 + CT-rich Low_complexity Low_complexity 1 66 0 2540 30 3 13 chr12 22516950 22517251 -121269204 + AluY SINE Alu 1 298 -13 319 330 11 0 chr12 22517609 22517703 -121268752 + MIR SINE MIR 52 146 -116 2043 138 3 16 chr12 22518246 22518550 -121267905 + AluSx SINE Alu 1 300 -12 1068 136 34 23 chr12 22518550 22518726 -121267729 + AluSg/x SINE Alu 134 311 -1 228 303 0 34 chr12 22519785 22519874 -121266581 + L2 LINE L2 3226 3311 -2 2153 116 27 3 chr12 22520412 22520713 -121265742 - AluSg SINE Alu -2 308 1 190 234 0 47 chr12 22520939 22521003 -121265452 - MER5A DNA MER1_type -114 75 15 439 265 61 8 chr12 22521273 22521405 -121265050 - L2 LINE L2 -397 2917 2779 2805 220 88 85 chr12 22521420 22521614 -121264841 - L1MC5 LINE L1 -36 7925 7733 1890 133 10 30 chr12 22521614 22521915 -121264540 - AluSx SINE Alu -17 295 1 2805 220 88 85 chr12 22521915 22523362 -121263093 - L1MC5 LINE L1 -228 7733 6293 2455 84 0 0 chr12 22523425 22523724 -121262731 + AluSc SINE Alu 1 299 -10 608 250 58 22 chr12 22523795 22524019 -121262436 - L1MC5 LINE L1 -1889 5919 5688 2304 277 69 35 chr12 22524029 22524870 -121261585 + L1PA15 LINE L1 2 871 -5916 6115 221 39 19 chr12 22524922 22525659 -121260796 + L1PA15 LINE L1 1264 1985 -4831 2087 87 11 14 chr12 22525659 22525946 -121260509 - AluY SINE Alu -13 298 13 6115 221 39 19 chr12 22525946 22527762 -121258693 + L1PA15 LINE L1 1985 3764 -3052 1789 188 3 0 chr12 22527762 22528071 -121258384 + AluJb SINE Alu 1 310 -2 6115 221 39 19 chr12 22528071 22528929 -121257526 + L1PA15 LINE L1 3764 4604 -2212 6115 198 42 5 chr12 22528929 22530941 -121255514 + L1PA15 LINE L1 4787 6816 0 6115 221 39 19 chr12 22530941 22530959 -121255496 + L1PA15 LINE L1 4604 6816 0 4107 136 35 55 chr12 22531092 22531863 -121254592 - LTR1 LTR ERV1 0 785 30 3234 176 15 31 chr12 22532047 22532662 -121253793 + MER6A DNA MER2_type 1 605 0 315 189 0 74 chr12 22533356 22533451 -121253004 - MIR SINE MIR 0 262 175 450 321 58 33 chr12 22533724 22533961 -121252494 + MIR SINE MIR 1 238 -24 1347 205 62 39 chr12 22536993 22537329 -121249126 + MER2 DNA MER2_type 1 344 0 215 250 0 17 chr12 22537730 22537790 -121248665 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 386 335 112 29 chr12 22538101 22538477 -121247978 - HAL1b LINE L1 -569 779 373 370 137 41 41 chr12 22538526 22538599 -121247856 + MLT1E1 LTR MaLR 1 73 -581 767 190 0 29 chr12 22538599 22538736 -121247719 + MLT1A2 LTR MaLR 1 133 -241 1897 82 4 8 chr12 22538736 22538979 -121247476 - AluSp SINE Alu -65 248 7 1283 237 107 7 chr12 22539026 22539326 -121247129 + MLT1E3 LTR MaLR 295 624 0 2604 248 29 35 chr12 22539328 22540130 -121246325 - L1ME1 LINE L1 -52 6114 5318 5325 138 21 28 chr12 22540139 22540984 -121245471 - L1PB3 LINE L1 -5 6149 5301 2301 83 0 0 chr12 22540984 22541273 -121245182 + AluY SINE Alu 1 289 -22 5325 138 21 28 chr12 22541273 22541655 -121244800 - L1PB3 LINE L1 -853 5301 4918 231 187 0 27 chr12 22541647 22541722 -121244733 - L1ME1 LINE L1 -816 5330 5258 * 622 121 0 0 chr12 22541734 22541825 -121244630 - AluSg/x SINE Alu -9 303 213 934 199 45 5 chr12 22541869 22542090 -121244365 - L1ME1 LINE L1 -968 5178 4949 2259 138 30 20 chr12 22542090 22542496 -121243959 - L1MA4A LINE L1 -6 6297 5888 1685 110 47 0 chr12 22542497 22542751 -121243704 + MSTB1 LTR MaLR 167 432 0 1995 246 71 2 chr12 22542752 22543288 -121243167 - L1ME1 LINE L1 -148 6018 5446 513 242 105 68 chr12 22543388 22543505 -121242950 - L1ME3A LINE L1 -17 6153 6042 2427 60 0 3 chr12 22543505 22543803 -121242652 - AluY SINE Alu -14 297 1 513 242 105 68 chr12 22543803 22543933 -121242522 - L1ME3A LINE L1 -128 6042 5897 2449 73 3 3 chr12 22544989 22545292 -121241163 - AluSp SINE Alu -7 306 4 609 244 139 42 chr12 22545569 22545807 -121240648 + MIR SINE MIR 2 262 0 285 414 53 6 chr12 22545892 22546061 -121240394 - MIR3 SINE MIR -11 197 21 217 367 0 0 chr12 22546820 22546899 -121239556 - L2 LINE L2 -8 3264 3186 * 278 337 11 0 chr12 22546886 22546978 -121239477 - MIR SINE MIR -158 104 12 281 244 26 13 chr12 22547396 22547474 -121238981 + MIR SINE MIR 63 141 -121 199 288 45 54 chr12 22547811 22547922 -121238533 - MIR SINE MIR -62 146 37 22 35 0 0 chr12 22548995 22549024 -121237431 + AT_rich Low_complexity Low_complexity 1 29 0 362 211 21 21 chr12 22549264 22549359 -121237096 - L1ME3A LINE L1 -339 5782 5688 207 0 0 0 chr12 22549830 22549853 -121236602 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 686 139 9 0 chr12 22549853 22549968 -121236487 - LTR9B LTR ERV1 -84 560 445 254 292 56 49 chr12 22550164 22550308 -121236147 - L1ME3A LINE L1 -1304 4842 4698 1510 174 107 58 chr12 22552125 22552557 -121233898 + MSTB2 LTR MaLR 5 457 0 593 261 21 0 chr12 22553013 22553155 -121233300 + MER58A DNA MER1_type 11 155 0 3053 288 123 8 chr12 22553200 22554370 -121232085 - L2 LINE L2 -1497 1817 513 585 227 34 23 chr12 22554404 22554580 -121231875 + MER5B DNA MER1_type 1 178 0 241 265 60 12 chr12 22554824 22554907 -121231548 + MIR SINE MIR 74 160 -102 35 71 0 0 chr12 22555021 22555091 -121231364 + AT_rich Low_complexity Low_complexity 1 70 0 186 262 16 33 chr12 22557210 22557271 -121229184 - MER5B DNA MER1_type 0 178 119 2036 142 3 0 chr12 22557424 22557720 -121228735 + AluSx SINE Alu 1 297 -15 974 306 51 21 chr12 22558069 22558458 -121227997 - LTR33 LTR ERVL -6 515 115 258 344 31 23 chr12 22558571 22558699 -121227756 - L2 LINE L2 -5 3308 3180 465 210 341 0 chr12 22559251 22559389 -121227066 - MER5A DNA MER1_type -1 188 4 1341 169 20 66 chr12 22560218 22560392 -121226063 + Tigger1 DNA MER2_type 2 158 -2260 2391 78 10 0 chr12 22560392 22560698 -121225757 - AluSg SINE Alu -1 309 1 1341 169 20 66 chr12 22560698 22560825 -121225630 + Tigger1 DNA MER2_type 158 289 -2129 * 7851 127 42 16 chr12 22560814 22560916 -121225539 + Tigger1 DNA MER2_type 1070 1168 -1250 2315 101 0 3 chr12 22560916 22561224 -121225231 + AluSx SINE Alu 1 307 -5 7851 127 42 16 chr12 22561224 22562022 -121224433 + Tigger1 DNA MER2_type 1168 2017 -401 584 216 17 0 chr12 22562022 22562138 -121224317 + FLAM_C SINE Alu 1 118 -15 7851 127 42 16 chr12 22562138 22562550 -121223905 + Tigger1 DNA MER2_type 2017 2417 -1 240 299 56 70 chr12 22562631 22562845 -121223610 - MLT1J LTR MaLR -191 320 110 483 335 49 5 chr12 22563109 22563294 -121223161 + MIR SINE MIR 57 249 -13 217 196 59 20 chr12 22564295 22564346 -121222109 - L2 LINE L2 -5 3308 3256 * 603 278 46 107 chr12 22564327 22564759 -121221696 + L2 LINE L2 2908 3313 0 192 264 222 0 chr12 22565391 22565463 -121220992 - MIR SINE MIR -73 189 102 23 33 0 0 chr12 22568739 22568769 -121217686 + AT_rich Low_complexity Low_complexity 1 30 0 420 229 81 93 chr12 22568965 22569288 -121217167 - L1MEd LINE L1 -4886 1233 915 532 168 40 16 chr12 22569477 22569601 -121216854 + MLT1A1 LTR MaLR 4 131 -234 285 345 17 8 chr12 22569611 22569730 -121216725 - L1MEd LINE L1 -5448 671 552 6941 162 25 6 chr12 22569747 22570973 -121215482 - L1PA13 LINE L1 -1364 4782 3533 6325 89 10 4 chr12 22570977 22572353 -121214102 + L1PA13 LINE L1 4777 6161 -2 2097 87 0 62 chr12 22572917 22573240 -121213215 + AluY SINE Alu 1 303 -8 1100 243 61 89 chr12 22573294 22573612 -121212843 - LTR16A1 LTR ERVL 0 457 132 957 147 0 0 chr12 22573612 22573782 -121212673 + (TCCC)n Simple_repeat Simple_repeat 3 172 0 1459 92 5 0 chr12 22573783 22573979 -121212476 - AluSg/x SINE Alu -33 277 81 1100 243 61 89 chr12 22573979 22574119 -121212336 - LTR16A1 LTR ERVL -324 133 10 11318 211 34 25 chr12 22574926 22578956 -121207499 - L1MB2 LINE L1 -1 5994 1898 1331 152 31 9 chr12 22578956 22579180 -121207275 - MER30 DNA MER1_type 0 230 2 11318 211 34 25 chr12 22579180 22579498 -121206957 - L1MB2 LINE L1 -4097 1898 1584 2955 236 26 48 chr12 22579514 22580593 -121205862 - L1MB2 LINE L1 -4528 1444 390 392 153 59 0 chr12 22580616 22580701 -121205754 + L1M4 LINE L1 1290 1379 -5163 281 270 71 63 chr12 22580715 22580841 -121205614 - L1M3d LINE L1 -5089 802 676 231 239 57 68 chr12 22580909 22580997 -121205458 - L1MB2 LINE L1 -5489 402 316 302 237 26 13 chr12 22581050 22581126 -121205329 - L1MB2 LINE L1 -5814 77 1 207 286 0 0 chr12 22582548 22582604 -121203851 + T-rich Low_complexity Low_complexity 1 56 0 3607 146 0 16 chr12 22582783 22583393 -121203062 - L1PA6 LINE L1 -4498 1648 1049 * 24441 66 8 2 chr12 22583392 22587807 -121198648 + L1PA6 LINE L1 1630 6154 0 21 0 0 0 chr12 22588819 22588840 -121197615 + AT_rich Low_complexity Low_complexity 1 21 0 1623 230 64 60 chr12 22590359 22590859 -121195596 + MLT1E LTR MaLR 92 593 0 191 329 158 36 chr12 22591731 22592035 -121194420 - L2 LINE L2 -407 2907 2567 289 313 116 0 chr12 22593354 22593466 -121192989 - L2 LINE L2 0 3313 3189 371 171 27 36 chr12 22593707 22593818 -121192637 + L1MC5 LINE L1 7802 7911 -50 287 212 141 12 chr12 22595431 22595516 -121190939 - MIR SINE MIR -1 261 166 231 127 56 28 chr12 22595516 22595587 -121190868 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 388 270 138 33 chr12 22595588 22595740 -121190715 - MIR SINE MIR -94 168 1 220 246 0 43 chr12 22595789 22595858 -121190597 + L2 LINE L2 3174 3239 -33 991 273 75 13 chr12 22595887 22596463 -121189992 - L1ME LINE L1 -365 5805 5192 260 289 60 30 chr12 22596820 22596986 -121189469 - MLT1J LTR MaLR -332 179 9 915 276 19 0 chr12 22599116 22599330 -121187125 - MIR SINE MIR -42 220 3 578 257 155 41 chr12 22599330 22599578 -121186877 - L2 LINE L2 -272 3041 2733 2320 105 0 6 chr12 22599578 22599892 -121186563 + AluSx SINE Alu 1 312 0 578 257 155 41 chr12 22599892 22600007 -121186448 - L2 LINE L2 -580 2733 2633 874 268 101 10 chr12 22600778 22601084 -121185371 - L2 LINE L2 -724 2590 2257 1765 177 6 15 chr12 22604095 22604429 -121182026 + MER1B DNA MER1_type 8 338 -1 14034 140 15 8 chr12 22604514 22604766 -121181689 + Tigger1 DNA MER2_type 1 250 -2168 2020 146 30 30 chr12 22604766 22605102 -121181353 - MER1B DNA MER1_type 0 337 2 14034 140 15 8 chr12 22605102 22607249 -121179206 + Tigger1 DNA MER2_type 250 2418 0 212 313 61 54 chr12 22607332 22607479 -121178976 - MER5B DNA MER1_type -28 150 3 180 0 0 0 chr12 22611108 22611128 -121175327 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 22611603 22611626 -121174829 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 22611910 22611931 -121174524 + AT_rich Low_complexity Low_complexity 1 21 0 288 286 87 16 chr12 22613308 22613434 -121173021 + L2 LINE L2 3138 3272 0 191 324 27 0 chr12 22613520 22613594 -121172861 - L2 LINE L2 -545 2769 2694 285 277 92 25 chr12 22614295 22614414 -121172041 + L2 LINE L2 3182 3308 -5 1538 79 75 0 chr12 22614627 22614841 -121171614 - MER30 DNA MER1_type 0 230 1 207 286 14 14 chr12 22614975 22615045 -121171410 + L2 LINE L2 3242 3311 -2 731 330 141 0 chr12 22616176 22616546 -121169909 - L2 LINE L2 -75 3238 2817 271 381 90 13 chr12 22616629 22616784 -121169671 - MIR SINE MIR -76 186 20 330 287 46 0 chr12 22617021 22617108 -121169347 + MIR SINE MIR 161 251 -11 618 294 64 9 chr12 22618179 22618397 -121168058 + MIR SINE MIR 1 230 -32 1902 96 81 15 chr12 22618421 22618714 -121167741 - AluSg SINE Alu 0 310 1 23 0 0 0 chr12 22618721 22618744 -121167711 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 22618781 22618803 -121167652 + AT_rich Low_complexity Low_complexity 1 22 0 515 317 52 15 chr12 22618920 22619396 -121167059 - L1M4 LINE L1 -2145 4001 3508 * 6249 42 2 4 chr12 22619391 22620199 -121166256 - L1PA7 LINE L1 -1 6153 5347 270 286 112 13 chr12 22620226 22620450 -121166005 - L1MEd LINE L1 -4970 1149 904 1730 236 95 45 chr12 22620470 22621157 -121165298 - L1ME3 LINE L1 -71 6091 5371 306 215 83 35 chr12 22621157 22621301 -121165154 - L1MEd LINE L1 -5287 832 682 327 319 115 0 chr12 22621676 22621789 -121164666 - MIR SINE MIR -64 144 19 3196 91 9 0 chr12 22621843 22622285 -121164170 - MLT2A2 LTR ERVL 0 453 8 442 284 232 0 chr12 22622350 22622561 -121163894 + MIR SINE MIR 3 262 0 294 326 196 7 chr12 22624041 22624179 -121162276 + MIR SINE MIR 10 173 -89 2299 107 0 25 chr12 22624487 22624804 -121161651 + AluSx SINE Alu 1 309 -3 1314 210 49 43 chr12 22625496 22625801 -121160654 - AluJo SINE Alu -5 307 1 235 196 186 0 chr12 22626212 22626309 -121160146 + MLT1H LTR MaLR 1 115 -434 30253 105 12 57 chr12 22626346 22632787 -121153668 - L1PA7 LINE L1 -1 6153 12 31 26 0 0 chr12 22633940 22633978 -121152477 + AT_rich Low_complexity Low_complexity 1 38 0 219 333 0 18 chr12 22634376 22634433 -121152022 - L2 LINE L2 -31 3241 3186 24 0 0 0 chr12 22634668 22634692 -121151763 + AT_rich Low_complexity Low_complexity 1 24 0 2679 12 0 0 chr12 22635021 22635447 -121151008 - L1PA2 LINE L1 -580 5575 5150 5322 12 0 0 chr12 22635447 22636062 -121150393 + L1PA2 LINE L1 5555 6177 0 329 350 115 0 chr12 22638554 22638771 -121147684 - MIR SINE MIR -1 261 20 733 308 45 12 chr12 22638839 22639086 -121147369 + MIR SINE MIR 8 262 0 1291 185 50 0 chr12 22639150 22639452 -121147003 - MER33 DNA MER1_type 0 324 8 394 270 32 63 chr12 22640087 22640213 -121146242 + MIR SINE MIR 26 147 -61 1042 149 17 85 chr12 22640347 22640582 -121145873 + MER20 DNA MER1_type 1 219 0 186 219 0 24 chr12 22640962 22641003 -121145452 + CT-rich Low_complexity Low_complexity 2 41 0 1800 137 0 11 chr12 22641264 22641527 -121144928 + AluSx SINE Alu 5 264 -48 23 54 0 0 chr12 22642696 22642733 -121143722 + AT_rich Low_complexity Low_complexity 1 37 0 2281 90 10 0 chr12 22642738 22643038 -121143417 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr12 22647106 22647127 -121139328 + AT_rich Low_complexity Low_complexity 1 21 0 293 157 0 39 chr12 22647160 22647211 -121139244 - MIR SINE MIR -84 124 76 220 333 75 50 chr12 22647271 22647391 -121139064 + L2 LINE L2 3150 3272 0 1017 170 23 0 chr12 22647986 22648157 -121138298 + FAM SINE Alu 1 175 0 463 254 127 15 chr12 22649371 22649505 -121136950 + L2 LINE L2 3165 3313 0 2797 94 5 0 chr12 22649734 22650107 -121136348 - THE1C LTR MaLR 0 375 1 1901 131 55 33 chr12 22650360 22650727 -121135728 + THE1C LTR MaLR 1 375 0 671 289 21 11 chr12 22650733 22650923 -121135532 + MIR SINE MIR 23 214 -48 4640 52 0 0 chr12 22651648 22652220 -121134235 + L1PA7 LINE L1 5579 6150 -4 384 301 71 36 chr12 22652354 22652550 -121133905 + L2 LINE L2 3076 3278 -35 190 263 70 0 chr12 22653172 22653229 -121133226 + MIR SINE MIR 160 220 -42 2028 152 0 0 chr12 22654263 22654572 -121131883 + AluJb SINE Alu 1 309 -3 1993 152 0 3 chr12 22655346 22655656 -121130799 + AluJb SINE Alu 1 309 -3 205 200 0 0 chr12 22656401 22656441 -121130014 + (TA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr12 22656483 22656504 -121129951 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr12 22657743 22657772 -121128683 + AT_rich Low_complexity Low_complexity 1 29 0 1738 114 4 4 chr12 22658306 22658560 -121127895 - L1PA8A LINE L1 0 6131 5878 317 146 0 18 chr12 22658875 22658930 -121127525 - L1MC4 LINE L1 -1374 6668 6615 324 0 0 0 chr12 22658950 22658986 -121127469 + (TG)n Simple_repeat Simple_repeat 1 36 0 237 128 0 0 chr12 22659267 22659306 -121127149 - MADE1 DNA Mariner -40 40 2 363 325 64 6 chr12 22659915 22660072 -121126383 + MIR SINE MIR 31 196 -66 316 295 54 9 chr12 22660808 22660920 -121125535 + L2 LINE L2 2694 2810 -504 850 321 97 38 chr12 22660999 22661473 -121124982 + L2 LINE L2 2810 3311 -2 25 51 0 0 chr12 22661830 22661869 -121124586 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr12 22662614 22662641 -121123814 + AT_rich Low_complexity Low_complexity 1 27 0 2201 99 27 0 chr12 22662941 22663233 -121123222 + AluY SINE Alu 1 300 -11 5645 94 0 44 chr12 22664568 22665452 -121121003 - L1P LINE L1 -2148 3998 3154 6232 57 1 0 chr12 22665452 22666227 -121120228 + L1PA7 LINE L1 5378 6153 -1 408 20 0 0 chr12 22667951 22668000 -121118455 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 216 190 26 chr12 22668747 22668863 -121117592 - MIR SINE MIR -11 251 117 2650 48 0 0 chr12 22669615 22669924 -121116531 - AluY SINE Alu -2 309 1 386 20 20 0 chr12 22671398 22671449 -121115006 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1920 104 8 0 chr12 22671479 22671730 -121114725 - AluSx SINE Alu -14 298 46 347 293 81 16 chr12 22671774 22671897 -121114558 - L2 LINE L2 0 3272 3142 5205 114 8 3 chr12 22672944 22673705 -121112750 + L1PB1 LINE L1 5387 6151 0 475 353 87 36 chr12 22673975 22674697 -121111758 + L2 LINE L2 1316 2074 -1240 369 0 0 0 chr12 22675210 22675251 -121111204 + (CA)n Simple_repeat Simple_repeat 2 42 0 331 352 51 76 chr12 22675664 22675979 -121110476 - L2 LINE L2 -1 3271 2965 866 347 77 36 chr12 22676120 22676837 -121109618 + L2 LINE L2 2149 2894 -420 377 290 46 50 chr12 22677115 22677353 -121109102 - L2 LINE L2 -4 3309 3073 257 294 87 11 chr12 22677395 22677487 -121108968 + L2 LINE L2 3174 3272 0 24 53 0 0 chr12 22678072 22678110 -121108345 + AT_rich Low_complexity Low_complexity 1 38 0 365 327 80 6 chr12 22678114 22678276 -121108179 - MIR SINE MIR -14 248 75 186 337 11 63 chr12 22678862 22678957 -121107498 - L2 LINE L2 -183 3089 3000 1855 150 27 0 chr12 22679175 22679468 -121106987 + AluSx SINE Alu 1 301 -11 223 409 0 27 chr12 22679702 22679851 -121106604 - L2 LINE L2 -838 2476 2332 189 347 78 72 chr12 22681411 22681578 -121104877 + L2 LINE L2 3096 3263 -9 2536 74 0 0 chr12 22681769 22682078 -121104377 - AluSg SINE Alu -1 309 1 966 157 13 1 chr12 22682373 22682537 -121103918 + MER2 DNA MER2_type 1 173 -163 230 316 45 19 chr12 22683097 22683252 -121103203 - L1MC4a LINE L1 -1854 5954 5796 479 297 168 47 chr12 22683282 22683835 -121102620 - L1MC4a LINE L1 -776 5370 4751 249 248 9 19 chr12 22684051 22684156 -121102299 - L1MC4a LINE L1 -1877 4269 4166 21 36 0 0 chr12 22684623 22684651 -121101804 + AT_rich Low_complexity Low_complexity 1 28 0 190 263 158 0 chr12 22685852 22685928 -121100527 - MIR SINE MIR -10 252 165 182 79 0 53 chr12 22690018 22690056 -121096399 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 876 185 105 20 chr12 22690483 22690683 -121095772 - MER20 DNA MER1_type 0 219 3 21 0 0 0 chr12 22691506 22691527 -121094928 + AT_rich Low_complexity Low_complexity 1 21 0 488 270 7 47 chr12 22691797 22691945 -121094510 + MIR SINE MIR 47 188 -74 180 318 12 59 chr12 22692110 22692195 -121094260 - MIR SINE MIR -74 188 108 891 101 29 0 chr12 22693062 22693201 -121093254 + L1PA15 LINE L1 6023 6165 0 2056 101 13 51 chr12 22693454 22693770 -121092685 + AluSx SINE Alu 1 304 -8 333 270 81 9 chr12 22693778 22693889 -121092566 + MIR SINE MIR 144 262 0 22 0 0 0 chr12 22695581 22695603 -121090852 + AT_rich Low_complexity Low_complexity 1 22 0 2080 119 0 7 chr12 22695629 22695943 -121090512 - AluSx SINE Alu 0 312 1 208 147 0 0 chr12 22696061 22696095 -121090360 + MIR SINE MIR 119 152 -110 561 338 76 14 chr12 22696294 22696426 -121090029 + MIR SINE MIR 8 159 -103 222 118 0 0 chr12 22696426 22696460 -121089995 + (TAA)n Simple_repeat Simple_repeat 1 34 0 561 338 76 14 chr12 22696460 22696537 -121089918 + MIR SINE MIR 159 230 -32 318 299 21 0 chr12 22697148 22697245 -121089210 + GA-rich Low_complexity Low_complexity 2 100 0 308 308 147 13 chr12 22697667 22697891 -121088564 + L3 LINE CR1 1147 1400 -177 1593 239 95 25 chr12 22697891 22698363 -121088092 + MLT1D LTR MaLR 1 505 0 1948 142 3 17 chr12 22698717 22699013 -121087442 + AluSx SINE Alu 6 297 -15 529 251 64 11 chr12 22700513 22700700 -121085755 - MIR SINE MIR 0 262 66 422 301 136 0 chr12 22700702 22700878 -121085577 + MIR SINE MIR 8 207 -55 199 191 43 21 chr12 22701562 22701609 -121084846 - MIR SINE MIR -3 259 212 1996 143 3 10 chr12 22701651 22701951 -121084504 - AluSx SINE Alu -14 298 1 207 219 0 0 chr12 22702631 22702672 -121083783 + (TA)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr12 22703775 22703800 -121082655 + AT_rich Low_complexity Low_complexity 1 25 0 218 287 225 8 chr12 22705161 22705290 -121081165 + MIR3 SINE MIR 49 205 -3 191 307 117 28 chr12 22705977 22706156 -121080299 - L2 LINE L2 -901 2413 2219 239 287 156 8 chr12 22706197 22706319 -121080136 - L2 LINE L2 -6 3307 3168 236 371 124 30 chr12 22706493 22706792 -121079663 - L2 LINE L2 -342 2972 2646 324 344 9 40 chr12 22706850 22707074 -121079381 + L2 LINE L2 3097 3313 0 210 167 0 0 chr12 22708237 22708273 -121078182 + A-rich Low_complexity Low_complexity 1 36 0 2337 97 0 0 chr12 22708777 22709077 -121077378 + AluY SINE Alu 1 300 -11 23 68 0 0 chr12 22709421 22709465 -121076990 + AT_rich Low_complexity Low_complexity 1 44 0 629 307 69 62 chr12 22709682 22710299 -121076156 + L2 LINE L2 2510 3308 -5 1806 166 0 10 chr12 22710674 22710969 -121075486 - AluJo SINE Alu -12 300 9 1153 139 38 5 chr12 22712068 22712277 -121074178 - MER20 DNA MER1_type -3 216 1 32 26 0 0 chr12 22713319 22713358 -121073097 + AT_rich Low_complexity Low_complexity 1 39 0 393 141 71 0 chr12 22713676 22713761 -121072694 - L1MA10 LINE L1 -1722 4424 4334 * 3900 163 53 15 chr12 22713760 22715222 -121071233 + L1MA10 LINE L1 4408 5940 -249 1805 184 5 35 chr12 22715275 22715672 -121070783 + L1MA10 LINE L1 5948 6332 -2 1594 64 0 0 chr12 22716221 22716408 -121070047 + AluY SINE Alu 1 187 -124 512 33 0 0 chr12 22716408 22716469 -121069986 + AluY SINE Alu 220 280 -31 216 0 0 0 chr12 22716473 22716497 -121069958 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 204 319 44 44 chr12 22717497 22717610 -121068845 - L2 LINE L2 -24 3248 3136 268 337 39 42 chr12 22718075 22718360 -121068095 - L2 LINE L2 -1903 1411 1128 184 407 105 23 chr12 22718900 22719244 -121067211 - L2 LINE L2 -2561 753 382 1447 142 82 15 chr12 22719767 22720035 -121066420 + L1MB5 LINE L1 5881 6166 -8 23 0 0 0 chr12 22720041 22720064 -121066391 + AT_rich Low_complexity Low_complexity 1 23 0 350 353 94 14 chr12 22720247 22720522 -121065933 + L1ME3A LINE L1 4664 4960 -1186 674 237 49 74 chr12 22720630 22720999 -121065456 + L1ME3A LINE L1 4958 5314 -832 1022 224 229 55 chr12 22721030 22721463 -121064992 + L1ME3A LINE L1 5387 5894 -276 244 280 42 50 chr12 22721267 22721506 -121064949 + L1MA3 LINE L1 5705 5941 -364 * 22 35 0 0 chr12 22721686 22721715 -121064740 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr12 22722126 22722153 -121064302 + (CA)n Simple_repeat Simple_repeat 2 28 0 298 245 0 0 chr12 22722153 22722206 -121064249 + MER5B DNA MER1_type 125 177 -1 294 321 94 17 chr12 22722241 22722405 -121064050 - MIR3 SINE MIR -59 149 14 2302 76 0 10 chr12 22723694 22723996 -121062459 + THE1B LTR MaLR 66 364 0 1630 195 3 7 chr12 22724494 22724791 -121061664 - AluJo SINE Alu -16 296 1 189 0 0 0 chr12 22726201 22726222 -121060233 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1636 292 117 34 chr12 22726526 22727559 -121058896 + L2 LINE L2 2172 3295 -18 487 234 27 0 chr12 22728499 22728610 -121057845 + MER81 DNA DNA 1 114 0 380 283 88 31 chr12 22728703 22728862 -121057593 - MIR SINE MIR -86 176 9 305 265 31 10 chr12 22728910 22729008 -121057447 + MER5A DNA MER1_type 4 103 -86 237 308 90 0 chr12 22729940 22730018 -121056437 + L2 LINE L2 3187 3271 -1 323 325 151 39 chr12 22730305 22730511 -121055944 + L2 LINE L2 3044 3272 0 197 386 14 59 chr12 22730749 22730969 -121055486 + L2 LINE L2 2828 3037 -235 3497 34 0 0 chr12 22730980 22731398 -121055057 + L1PA4 LINE L1 5735 6152 -3 347 237 100 46 chr12 22733789 22733933 -121052522 + L1ME LINE L1 5486 5638 -483 604 265 65 25 chr12 22733935 22734180 -121052275 + L1ME4a LINE L1 5566 5820 -301 23 54 0 0 chr12 22734247 22734284 -121052171 + AT_rich Low_complexity Low_complexity 1 37 0 259 204 183 22 chr12 22734290 22734427 -121052028 + L1ME4a LINE L1 5962 6120 -1 1067 164 0 6 chr12 22735032 22735197 -121051258 - AluJb SINE Alu -17 295 132 711 200 133 0 chr12 22735382 22735547 -121050908 + MER20 DNA MER1_type 33 219 0 187 314 57 29 chr12 22736429 22736499 -121049956 - MIR SINE MIR -95 113 42 816 0 0 0 chr12 22736523 22736617 -121049838 - L1PA2 LINE L1 -2 6153 6060 6133 70 49 0 chr12 22736865 22737813 -121048642 - L1PA10 LINE L1 -11 6157 5170 568 252 23 64 chr12 22737872 22738097 -121048358 - MIR SINE MIR -16 246 34 349 316 15 52 chr12 22738301 22738437 -121048018 + MIR SINE MIR 31 161 -101 741 198 64 6 chr12 22738438 22738595 -121047860 + FRAM SINE Alu 1 166 -10 276 313 18 9 chr12 22738595 22738707 -121047748 + MIR SINE MIR 150 262 0 1883 123 3 3 chr12 22739462 22739747 -121046708 - MER75 DNA T2_type 0 514 230 31514 56 11 1 chr12 22739753 22745842 -121040613 + L1PA5 LINE L1 12 6151 -3 1637 127 8 0 chr12 22745842 22746087 -121040368 - MER75 DNA T2_type -264 250 4 292 287 101 31 chr12 22746231 22746360 -121040095 - MIR3 SINE MIR -56 152 15 256 93 93 74 chr12 22746361 22746415 -121040040 + MER3 DNA MER1_type 153 207 -2 274 306 109 48 chr12 22746774 22746921 -121039534 + MIR3 SINE MIR 28 183 -25 218 280 118 21 chr12 22750132 22750180 -121036275 + MIR SINE MIR 50 92 -170 527 307 74 25 chr12 22750180 22750424 -121036031 - MIR SINE MIR -2 260 5 218 280 118 21 chr12 22750424 22750468 -121035987 + MIR SINE MIR 92 151 -111 220 314 0 0 chr12 22752492 22752543 -121033912 - L2 LINE L2 -243 3070 3020 22 0 0 0 chr12 22752721 22752743 -121033712 + AT_rich Low_complexity Low_complexity 1 22 0 222 370 0 11 chr12 22752963 22753055 -121033400 + MIR SINE MIR 162 252 -10 2411 90 0 0 chr12 22755319 22755619 -121030836 - AluSp SINE Alu -13 300 1 252 0 0 0 chr12 22755644 22755672 -121030783 + (TG)n Simple_repeat Simple_repeat 1 28 0 307 214 0 58 chr12 22755693 22755796 -121030659 - L1MC3 LINE L1 -1139 6646 6550 4640 83 35 16 chr12 22755911 22756606 -121029849 + L1PA13 LINE L1 5452 6159 -4 752 208 0 6 chr12 22757291 22757464 -121028991 + GA-rich Low_complexity Low_complexity 1 172 0 342 369 45 0 chr12 22757518 22757697 -121028758 + L1M4 LINE L1 2959 3145 -3001 23 0 0 0 chr12 22758195 22758218 -121028237 + AT_rich Low_complexity Low_complexity 1 23 0 3154 34 13 0 chr12 22758820 22759201 -121027254 - L1PA5 LINE L1 -6 6148 5763 1236 157 8 30 chr12 22759590 22759826 -121026629 + L1MC1 LINE L1 5651 5881 -452 613 205 0 0 chr12 22759843 22759955 -121026500 + L1MC1 LINE L1 6205 6316 -17 22 0 0 0 chr12 22760026 22760048 -121026407 + AT_rich Low_complexity Low_complexity 1 22 0 1522 160 4 15 chr12 22760054 22760316 -121026139 + THE1C LTR MaLR 1 259 -116 184 352 84 0 chr12 22761020 22761091 -121025364 - L2 LINE L2 -39 3233 3157 315 200 62 0 chr12 22761329 22761394 -121025061 + L2 LINE L2 3245 3313 0 281 358 58 0 chr12 22762477 22762597 -121023858 - LTR16A LTR ERVL -323 127 1 315 0 0 0 chr12 22764549 22764584 -121021871 + (CAA)n Simple_repeat Simple_repeat 2 36 0 183 337 79 10 chr12 22765571 22765672 -121020783 - L2 LINE L2 -796 2518 2411 250 297 237 0 chr12 22766006 22766124 -121020331 - L2 LINE L2 -2 3311 3166 234 319 61 80 chr12 22766392 22766705 -121019750 + L1ME2 LINE L1 310 616 -5503 419 222 105 63 chr12 22766912 22767151 -121019304 + LTR16C LTR ERVL 234 482 -9 301 326 11 11 chr12 22767329 22767513 -121018942 + L1ME2 LINE L1 1026 1209 -4910 415 266 64 14 chr12 22767588 22767806 -121018649 + L1ME2 LINE L1 1306 1534 -4595 344 200 0 0 chr12 22768198 22768258 -121018197 - MER41B LTR ERV1 -9 626 567 318 106 0 0 chr12 22768363 22768410 -121018045 + (TG)n Simple_repeat Simple_repeat 2 48 0 731 107 0 0 chr12 22768423 22768526 -121017929 - AluY SINE Alu -14 297 195 205 302 111 0 chr12 22769432 22769495 -121016960 + MIR3 SINE MIR 124 193 -15 255 186 17 68 chr12 22769592 22769651 -121016804 + L2 LINE L2 3217 3272 0 21 0 0 0 chr12 22769715 22769736 -121016719 + AT_rich Low_complexity Low_complexity 1 21 0 681 247 38 71 chr12 22770922 22771443 -121015012 + L1ME2 LINE L1 2173 2811 -3318 668 243 79 23 chr12 22771449 22771626 -121014829 - MLT1E LTR MaLR -2 591 438 361 266 28 0 chr12 22771682 22771791 -121014664 - MLT1E LTR MaLR -467 126 15 2610 249 64 85 chr12 22771801 22773327 -121013128 + L1ME2 LINE L1 2809 4302 -1827 180 0 0 0 chr12 22773329 22773349 -121013106 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 350 86 35 0 chr12 22773355 22773413 -121013042 - L1MA2 LINE L1 -22 6282 6223 5266 152 16 4 chr12 22773513 22774764 -121011691 - L1M1 LINE L1 -671 5631 4364 882 134 0 0 chr12 22774747 22774881 -121011574 - L1M1 LINE L1 -2289 3857 3724 * 2604 235 82 33 chr12 22774880 22776641 -121009814 + L1ME2 LINE L1 4298 6136 -11 281 262 49 93 chr12 22776646 22776871 -121009584 + L1MC4 LINE L1 7827 8041 -1 334 344 107 20 chr12 22778940 22779193 -121007262 - L2 LINE L2 -65 3207 2933 432 305 144 58 chr12 22779397 22780214 -121006241 - L2 LINE L2 -160 3112 2192 1866 164 0 0 chr12 22780356 22780648 -121005807 + AluSx SINE Alu 1 292 -20 232 125 0 0 chr12 22780651 22780683 -121005772 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 423 132 0 13 chr12 22780683 22780759 -121005696 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 704 287 20 0 chr12 22781668 22781870 -121004585 - L2 LINE L2 -460 2854 2649 329 192 253 0 chr12 22781957 22782056 -121004399 - MIR SINE MIR -45 217 94 216 257 214 0 chr12 22783223 22783293 -121003162 - L2 LINE L2 -15 3257 3173 382 295 86 0 chr12 22787134 22787273 -120999182 + MIR SINE MIR 2 152 -110 33 25 0 0 chr12 22787275 22787315 -120999140 + AT_rich Low_complexity Low_complexity 1 40 0 435 317 79 18 chr12 22787315 22787643 -120998812 - L1ME LINE L1 -303 5818 5471 211 254 95 16 chr12 22787939 22788002 -120998453 - L2 LINE L2 -1 3312 3245 304 246 52 75 chr12 22788222 22788356 -120998099 - L1ME LINE L1 -1221 4925 4795 2572 228 66 37 chr12 22788959 22789745 -120996710 - L1ME2 LINE L1 -1 6163 5355 391 207 193 36 chr12 22789747 22789887 -120996568 + MLT1E2 LTR MaLR 3 164 -460 276 328 24 16 chr12 22789887 22790032 -120996423 + L1MA9 LINE L1 1356 1649 -5837 1688 256 71 36 chr12 22790530 22791516 -120994939 + L1MA9 LINE L1 1762 2775 -4721 631 74 0 0 chr12 22791513 22791594 -120994861 + L1PB1 LINE L1 5867 5947 -204 * 7937 210 57 29 chr12 22791584 22794349 -120992106 + L1MA9 LINE L1 2984 5938 -1793 2517 156 21 13 chr12 22794349 22794823 -120991632 + L1MA4 LINE L1 5812 6289 -11 7937 210 57 29 chr12 22794823 22796669 -120989786 + L1MA9 LINE L1 5938 7731 0 1421 250 95 41 chr12 22796673 22797157 -120989298 + MLT1E2 LTR MaLR 117 626 0 4504 257 67 52 chr12 22797157 22797267 -120989188 - L1M4 LINE L1 -787 5359 5252 1493 129 40 0 chr12 22797267 22797515 -120988940 - L1MA2 LINE L1 0 6304 6047 4504 257 67 52 chr12 22797515 22799551 -120986904 - L1M4 LINE L1 -894 5252 3181 321 230 35 9 chr12 22799540 22799653 -120986802 - L1M4 LINE L1 -3204 2942 2827 * 533 222 8 8 chr12 22799675 22799801 -120986654 - L1ME1 LINE L1 -6 6160 6035 2306 113 0 0 chr12 22800266 22800566 -120985889 - AluSx SINE Alu -4 308 9 365 292 85 0 chr12 22800692 22800822 -120985633 + MIR SINE MIR 109 249 -13 8664 100 45 0 chr12 22800953 22802185 -120984270 + HSMAR1 DNA Mariner 1 1287 0 331 223 60 130 chr12 22803020 22803204 -120983251 + MER5A DNA MER1_type 10 180 -9 256 362 79 0 chr12 22803480 22803632 -120982823 + L2 LINE L2 3145 3308 -5 22 70 0 0 chr12 22804323 22804366 -120982089 + AT_rich Low_complexity Low_complexity 1 43 0 431 174 79 9 chr12 22804497 22804611 -120981844 - MLT1A1 LTR MaLR -215 150 24 6089 150 64 15 chr12 22804611 22805201 -120981254 + L1MA5 LINE L1 4130 4690 -1613 1911 168 0 3 chr12 22805201 22805486 -120980969 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr12 22805486 22805507 -120980948 + (CA)n Simple_repeat Simple_repeat 2 22 0 6089 150 64 15 chr12 22805507 22806331 -120980124 + L1MA5 LINE L1 4689 5586 -717 * 36190 101 8 10 chr12 22806326 22812495 -120973960 + L1PA6 LINE L1 2 6154 0 3442 144 21 72 chr12 22812495 22813254 -120973201 + L1MA5 LINE L1 5572 6295 -5 23 33 0 0 chr12 22813772 22813802 -120972653 + AT_rich Low_complexity Low_complexity 1 30 0 667 295 133 50 chr12 22816645 22817169 -120969286 - L2 LINE L2 0 3313 2748 434 244 42 17 chr12 22817607 22817726 -120968729 + MER5B DNA MER1_type 1 122 -56 441 247 21 0 chr12 22817795 22817892 -120968563 - MLT1J1 LTR MaLR -315 131 33 22 35 0 0 chr12 22818030 22818059 -120968396 + AT_rich Low_complexity Low_complexity 1 29 0 1930 130 0 0 chr12 22820099 22820368 -120966087 + AluSx SINE Alu 1 269 -43 363 306 38 33 chr12 22871006 22871189 -120915266 - L1ME4a LINE L1 -168 5953 5770 373 252 34 27 chr12 22871535 22871682 -120914773 - L1ME4a LINE L1 -296 5825 5678 338 245 46 61 chr12 22871773 22871969 -120914486 - L1ME4a LINE L1 -224 5897 5705 4581 88 13 0 chr12 22872015 22872648 -120913807 - L1PA11 LINE L1 0 6174 5534 392 282 10 10 chr12 22873637 22873740 -120912715 - L2 LINE L2 0 3272 3170 202 182 18 36 chr12 22874810 22874865 -120911590 + CT-rich Low_complexity Low_complexity 2 55 0 1226 44 11 22 chr12 22875011 22875191 -120911264 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1681 106 96 18 chr12 22875200 22875482 -120910973 - AluJo SINE Alu -8 304 1 345 194 0 21 chr12 22875853 22875946 -120910509 - L1MA4 LINE L1 0 6300 6210 265 259 19 0 chr12 22876682 22876736 -120909719 - L2 LINE L2 -8 3264 3210 418 276 103 43 chr12 22876823 22877008 -120909447 - MIR SINE MIR -13 249 54 341 297 0 7 chr12 22876995 22877174 -120909281 - MIR SINE MIR -6 256 38 * 22 0 0 0 chr12 22877870 22877892 -120908563 + AT_rich Low_complexity Low_complexity 1 22 0 265 229 0 0 chr12 22877950 22878011 -120908444 - L1ME4a LINE L1 -104 6017 5957 403 261 108 0 chr12 22878012 22878123 -120908332 + MER94 DNA DNA 12 134 0 1851 205 79 90 chr12 22878198 22878730 -120907725 + MLT1F1 LTR MaLR 10 560 -7 279 362 72 5 chr12 22878977 22879184 -120907271 - L1ME4a LINE L1 -2144 5664 5444 582 313 136 30 chr12 22879215 22879839 -120906616 - L1ME4a LINE L1 -786 5360 4671 955 117 7 0 chr12 22880051 22880196 -120906259 - L1PA10 LINE L1 -5 6163 6018 180 0 0 0 chr12 22880255 22880275 -120906180 + (T)n Simple_repeat Simple_repeat 1 20 0 616 319 14 9 chr12 22882785 22883001 -120903454 - MIR SINE MIR -31 231 15 24 53 0 0 chr12 22883293 22883331 -120903124 + AT_rich Low_complexity Low_complexity 1 38 0 377 326 45 23 chr12 22884796 22884928 -120901527 + L2 LINE L2 3138 3272 0 367 244 181 19 chr12 22885822 22885982 -120900473 - MIR SINE MIR -10 252 67 361 221 195 20 chr12 22886060 22886209 -120900246 + MIR SINE MIR 78 252 -10 4409 147 50 3 chr12 22886274 22886960 -120899495 - MER72 LTR ERV1 0 722 5 444 316 109 38 chr12 22887103 22887663 -120898792 - L2 LINE L2 -1163 2151 1552 758 177 0 0 chr12 22887956 22888080 -120898375 + FLAM_A SINE Alu 2 125 -8 313 254 28 79 chr12 22888207 22888384 -120898071 + HAL1 LINE L1 42 209 -2298 2151 268 160 24 chr12 22888491 22889690 -120896765 + HAL1 LINE L1 386 1747 -760 1746 115 4 19 chr12 22889700 22889960 -120896495 - MER4A LTR ERV1 0 664 409 1122 125 155 10 chr12 22889955 22890155 -120896300 + LTR8 LTR ERV1 29 257 -434 * 11310 105 109 81 chr12 22890155 22890364 -120896091 - MER4A-int LTR ERV1 -4103 2495 2293 2272 110 0 0 chr12 22890364 22890665 -120895790 + AluSx SINE Alu 1 301 -11 11310 105 109 81 chr12 22890665 22892156 -120894299 - MER4A-int LTR ERV1 -4305 2293 705 378 0 0 0 chr12 22892156 22892198 -120894257 + (TG)n Simple_repeat Simple_repeat 1 42 0 11310 105 109 81 chr12 22892198 22892924 -120893531 - MER4A-int LTR ERV1 -5893 705 1 1771 125 12 31 chr12 22892927 22893279 -120893176 - MER4A LTR ERV1 0 664 261 621 120 0 20 chr12 22893279 22893379 -120893076 - MER4A LTR ERV1 -566 98 1 17092 99 37 18 chr12 22893387 22896095 -120890360 - MER4A-int LTR ERV1 -2 6596 3837 3908 111 61 52 chr12 22896094 22896975 -120889480 - MER4A-int LTR ERV1 -2917 3681 2793 * 4402 174 47 5 chr12 22897514 22898308 -120888147 - MER21B LTR ERV1 -36 827 1 1096 240 178 53 chr12 22899815 22899963 -120886492 + L2 LINE L2 2827 2955 -358 1443 245 70 40 chr12 22899963 22900309 -120886146 + MER34 LTR ERV1 1 370 -172 1809 158 21 18 chr12 22900309 22900594 -120885861 - AluJo SINE Alu -26 286 1 1443 245 70 40 chr12 22900594 22900773 -120885682 + MER34 LTR ERV1 370 542 0 1096 240 178 53 chr12 22900773 22901057 -120885398 + L2 LINE L2 2955 3313 0 200 119 24 48 chr12 22903101 22903143 -120883312 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2311 144 33 0 chr12 22903153 22903548 -120882907 - L1PA16 LINE L1 -21 6145 5738 737 234 37 46 chr12 22903548 22903766 -120882689 - L2 LINE L2 -9 3304 3089 29 0 0 0 chr12 22904068 22904097 -120882358 + AT_rich Low_complexity Low_complexity 1 29 0 313 269 11 0 chr12 22905612 22905705 -120880750 + (CTA)n Simple_repeat Simple_repeat 1 94 0 274 340 52 13 chr12 22906089 22906242 -120880213 + MIR SINE MIR 71 229 -33 191 339 0 16 chr12 22906387 22906449 -120880006 + MIR SINE MIR 47 107 -155 283 177 149 139 chr12 22906602 22906798 -120879657 + MIR SINE MIR 1 188 -60 948 136 107 0 chr12 22906997 22907137 -120879318 + FRAM SINE Alu 1 152 -24 234 269 77 0 chr12 22907685 22907763 -120878692 - MIR SINE MIR -109 99 16 185 282 70 0 chr12 22908083 22908154 -120878301 - L2 LINE L2 -1336 1978 1903 295 383 11 34 chr12 22909968 22910143 -120876312 + MIR SINE MIR 36 206 -56 2072 127 13 13 chr12 22910148 22910455 -120876000 - AluSx SINE Alu -5 307 1 304 305 5 0 chr12 22913543 22913636 -120872819 - MLT1J2 LTR MaLR -308 142 64 556 300 47 6 chr12 22913689 22913859 -120872596 - MIR SINE MIR -55 207 31 1603 178 0 88 chr12 22914002 22914344 -120872111 - AluJb SINE Alu 0 312 1 231 367 42 39 chr12 22914633 22914864 -120871591 + MIR SINE MIR 23 248 -14 338 247 0 35 chr12 22917975 22918060 -120868395 - L2 LINE L2 -3 3310 3229 198 348 181 23 chr12 22918077 22918376 -120868079 + L2 LINE L2 2294 2639 -675 2291 108 10 0 chr12 22918381 22918678 -120867777 + AluSq SINE Alu 4 303 -10 21 71 0 0 chr12 22919269 22919311 -120867144 + AT_rich Low_complexity Low_complexity 1 42 0 2084 123 3 3 chr12 22920481 22920773 -120865682 - AluSx SINE Alu -20 292 1 285 366 98 5 chr12 22920773 22920967 -120865488 + L2 LINE L2 2848 3059 -213 225 182 15 76 chr12 22921164 22921230 -120865225 + L2 LINE L2 3250 3311 -2 638 366 81 25 chr12 22921603 22922272 -120864183 + L2 LINE L2 2550 3259 -13 185 0 40 0 chr12 22922273 22922298 -120864157 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2117 206 30 8 chr12 22922445 22922947 -120863508 - LTR27 LTR ERV1 0 501 12 464 244 83 57 chr12 22924374 22924567 -120861888 - MIR SINE MIR -2 260 63 1004 219 0 0 chr12 22925234 22925435 -120861020 - L1PB4 LINE L1 -7 6149 5949 24 103 0 0 chr12 22925463 22925550 -120860905 + AT_rich Low_complexity Low_complexity 1 87 0 450 305 86 10 chr12 22925687 22925884 -120860571 - MIR SINE MIR -4 258 47 384 259 38 8 chr12 22926395 22926526 -120859929 + L1ME LINE L1 5690 5824 -297 399 217 8 33 chr12 22927051 22927171 -120859284 + MER102a DNA MER1_type 66 182 -148 2243 91 15 76 chr12 22927221 22927615 -120858840 + THE1C LTR MaLR 6 375 0 295 194 19 93 chr12 22927618 22927726 -120858729 + MER102a DNA MER1_type 231 330 0 327 285 76 35 chr12 22928196 22928340 -120858115 - MER5A DNA MER1_type -2 187 38 270 222 0 63 chr12 22928917 22928980 -120857475 + L2 LINE L2 3248 3306 -7 414 143 0 0 chr12 22929155 22929232 -120857223 + (TG)n Simple_repeat Simple_repeat 2 78 0 1587 174 31 31 chr12 22929239 22929527 -120856928 - AluJo SINE Alu -24 288 1 29 0 0 0 chr12 22929527 22929556 -120856899 + AT_rich Low_complexity Low_complexity 1 29 0 427 257 223 10 chr12 22930413 22930615 -120855840 - MIR SINE MIR -1 261 17 249 267 0 0 chr12 22933991 22934036 -120852419 + L2 LINE L2 3012 3056 -257 472 284 28 7 chr12 22934062 22934203 -120852252 + L2 LINE L2 3165 3308 -5 1976 90 65 7 chr12 22934616 22934894 -120851561 + AluSx SINE Alu 1 294 -18 1489 133 0 9 chr12 22934952 22935170 -120851285 + AluJb SINE Alu 87 302 -10 24 32 0 0 chr12 22935284 22935315 -120851140 + AT_rich Low_complexity Low_complexity 1 31 0 1872 174 13 7 chr12 22935587 22935897 -120850558 + AluJb SINE Alu 1 312 0 2448 60 7 3 chr12 22936279 22936580 -120849875 + AluY SINE Alu 1 302 -9 240 198 111 37 chr12 22936630 22936711 -120849744 + L2 LINE L2 3226 3312 -1 2306 267 132 70 chr12 22937390 22938521 -120847934 + L2 LINE L2 1836 3077 -236 1885 143 7 40 chr12 22938521 22938822 -120847633 + AluSx SINE Alu 1 291 -21 2306 267 132 70 chr12 22938822 22939074 -120847381 + L2 LINE L2 3077 3312 -1 208 271 53 66 chr12 22942662 22942813 -120843642 - L2 LINE L2 -1100 2214 2066 * 328 322 94 22 chr12 22942776 22942956 -120843499 + MIR3 SINE MIR 11 203 -5 403 310 64 35 chr12 22945657 22945860 -120840595 - MIR SINE MIR -11 251 43 261 0 0 0 chr12 22946486 22946515 -120839940 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2486 74 0 6 chr12 22946525 22946836 -120839619 + AluY SINE Alu 1 309 -2 219 170 0 0 chr12 22947496 22947543 -120838912 + (TTATA)n Simple_repeat Simple_repeat 4 50 0 278 238 113 0 chr12 22947942 22948022 -120838433 - L1MC/D LINE L1 -2210 5598 5510 22 70 0 0 chr12 22948259 22948302 -120838153 + AT_rich Low_complexity Low_complexity 1 43 0 404 256 0 17 chr12 22948583 22948700 -120837755 - L1MD1 LINE L1 0 6242 6128 444 112 0 34 chr12 22948891 22948980 -120837475 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 491 279 71 31 chr12 22949137 22949363 -120837092 - MIR SINE MIR -13 249 15 575 251 76 53 chr12 22949460 22949631 -120836824 - MER21B LTR ERV1 -688 175 1 3966 189 79 5 chr12 22949693 22950461 -120835994 - MER21B LTR ERV1 -38 825 1 875 255 70 67 chr12 22950642 22951285 -120835170 + L1M4 LINE L1 4368 5012 -1134 1542 147 24 4 chr12 22951294 22951546 -120834909 + AluJb SINE Alu 2 258 -54 36 0 0 0 chr12 22951559 22951595 -120834860 + AT_rich Low_complexity Low_complexity 1 36 0 2141 109 7 0 chr12 22952002 22952295 -120834160 - AluSq SINE Alu -18 295 1 352 145 14 0 chr12 22953375 22953444 -120833011 - L1PB4 LINE L1 -3 6153 6084 306 217 204 51 chr12 22953573 22953730 -120832725 - Charlie2a DNA MER1_type -1203 1659 1479 356 262 37 0 chr12 22953830 22953937 -120832518 - Charlie2b DNA MER1_type -2116 666 556 * 568 307 18 26 chr12 22953934 22954162 -120832293 - Charlie2b DNA MER1_type -2549 313 88 694 46 0 0 chr12 22954359 22954446 -120832009 + AluY SINE Alu 217 303 -8 2462 135 13 8 chr12 22954446 22954838 -120831617 - MSTA LTR MaLR -34 394 1 877 146 111 12 chr12 22954861 22954968 -120831487 + AluJb SINE Alu 113 245 -67 294 29 0 0 chr12 22954968 22955003 -120831452 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 877 146 111 12 chr12 22955003 22955066 -120831389 + AluJb SINE Alu 245 300 -12 278 202 269 0 chr12 22955790 22955894 -120830561 + MIR SINE MIR 66 197 -65 675 262 155 47 chr12 22956215 22957082 -120829373 + L1ME4a LINE L1 565 1395 -4736 902 260 79 47 chr12 22957435 22957959 -120828496 - MLT1G1 LTR MaLR -44 523 1 319 284 78 9 chr12 22957960 22958076 -120828379 - MLT1G1-int LTR MaLR -1 1734 1611 281 263 17 0 chr12 22958109 22958227 -120828228 + L1ME4a LINE L1 3121 3240 -2889 418 306 68 38 chr12 22958262 22958527 -120827928 + L1ME4a LINE L1 5619 5891 -213 1544 165 27 54 chr12 22958641 22958938 -120827517 + AluJo SINE Alu 1 289 -23 249 108 0 0 chr12 22960115 22960152 -120826303 + (TG)n Simple_repeat Simple_repeat 1 37 0 25 51 0 0 chr12 22960745 22960784 -120825671 + AT_rich Low_complexity Low_complexity 1 39 0 259 200 17 17 chr12 22960962 22961022 -120825433 + (CA)n Simple_repeat Simple_repeat 2 61 0 1498 245 162 17 chr12 22961176 22961768 -120824687 + HsTC2c DNA Tc2 1 678 -51 2245 115 0 0 chr12 22961772 22962067 -120824388 - AluSx SINE Alu -17 295 1 29 60 0 0 chr12 22962067 22962117 -120824338 + AT_rich Low_complexity Low_complexity 1 50 0 339 247 93 26 chr12 22962254 22962378 -120824077 - MIR SINE MIR -62 146 37 1043 221 43 35 chr12 22962689 22963037 -120823418 - HAL1 LINE L1 -877 1630 1280 431 290 65 0 chr12 22963043 22963181 -120823274 + L2 LINE L2 1912 2058 -1256 1210 112 22 0 chr12 22963181 22963359 -120823096 - AluSc SINE Alu 0 309 128 1262 268 100 35 chr12 22963359 22963818 -120822637 + L2 LINE L2 2169 2657 -657 828 257 125 21 chr12 22963820 22964100 -120822355 + LTR50 LTR ERVL 1 309 -486 2303 58 0 0 chr12 22964208 22964482 -120821973 + AluY SINE Alu 37 310 -1 225 338 0 0 chr12 22964485 22964553 -120821902 - Tigger2 DNA MER2_type -1399 1319 1252 300 189 45 9 chr12 22964855 22964966 -120821489 + (TA)n Simple_repeat Simple_repeat 1 115 0 522 294 65 85 chr12 22966157 22966404 -120820051 + L2 LINE L2 2221 2456 -858 1874 170 3 0 chr12 22966404 22966710 -120819745 - AluJo SINE Alu -5 307 1 522 294 65 85 chr12 22966710 22966921 -120819534 + L2 LINE L2 2456 2670 -644 2289 103 0 0 chr12 22966971 22967271 -120819184 - AluSg SINE Alu -10 300 1 267 339 73 9 chr12 22967429 22967538 -120818917 + L2 LINE L2 3143 3258 -14 2253 83 6 19 chr12 22968438 22968752 -120817703 - AluSg SINE Alu 0 310 1 2134 113 3 0 chr12 22968801 22969083 -120817372 + AluSc SINE Alu 1 283 -26 198 0 0 0 chr12 22969090 22969112 -120817343 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 553 286 33 29 chr12 22969526 22969767 -120816688 + HAL1b LINE L1 185 426 -922 538 257 47 0 chr12 22970043 22970186 -120816269 + MER63 DNA MER1_type 5 780 -56 982 285 35 38 chr12 22970186 22970555 -120815900 - MER93a LTR ERV1 0 402 35 1547 233 33 35 chr12 22970790 22971215 -120815240 - MLT1C LTR MaLR -2 465 42 330 143 0 0 chr12 22971475 22971524 -120814931 + Alu SINE Alu 1 44 -255 1282 137 5 10 chr12 22971524 22971728 -120814727 + AluSg/x SINE Alu 92 294 -18 28 0 0 0 chr12 22971729 22971757 -120814698 + AT_rich Low_complexity Low_complexity 1 28 0 529 201 50 78 chr12 22971970 22972149 -120814306 + L1ME LINE L1 5521 5694 -427 267 133 0 0 chr12 22973386 22973431 -120813024 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 65 0 0 chr12 22973932 22973978 -120812477 + AT_rich Low_complexity Low_complexity 1 46 0 260 336 10 0 chr12 22974719 22974823 -120811632 + CT-rich Low_complexity Low_complexity 2 106 0 23 78 0 0 chr12 22976836 22976887 -120809568 + AT_rich Low_complexity Low_complexity 1 51 0 960 103 0 146 chr12 22977190 22977407 -120809048 - AluSg/x SINE Alu 0 317 128 225 0 0 0 chr12 22977407 22977432 -120809023 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1963 135 0 0 chr12 22977433 22977707 -120808748 - AluSx SINE Alu -36 276 3 2030 129 7 0 chr12 22977711 22977998 -120808457 - AluSx SINE Alu -18 294 6 296 48 24 0 chr12 22978278 22978320 -120808135 + (ATG)n Simple_repeat Simple_repeat 3 45 0 828 257 23 0 chr12 22978338 22978513 -120807942 - MIR SINE MIR -25 237 59 687 353 98 38 chr12 22979280 22979805 -120806650 - L2 LINE L2 0 3272 2715 464 332 47 14 chr12 22979926 22980137 -120806318 - MLT1J2 LTR MaLR 0 450 233 956 257 152 19 chr12 22980422 22980737 -120805718 + L2 LINE L2 2957 3313 0 498 328 41 6 chr12 22981064 22981235 -120805220 + MIR SINE MIR 15 191 -71 248 283 139 6 chr12 22981725 22981891 -120804564 + L2 LINE L2 1899 2086 -1228 197 342 13 0 chr12 22981966 22982042 -120804413 + L2 LINE L2 2337 2413 -901 327 377 31 21 chr12 22982388 22982579 -120803876 + L2 LINE L2 2866 3058 -214 1576 164 68 180 chr12 22982676 22983452 -120803003 - LTR8A LTR ERV1 -7 720 32 2087 111 3 13 chr12 22984034 22984332 -120802123 + AluSx SINE Alu 1 295 -17 3741 180 98 30 chr12 22984477 22984914 -120801541 + MER21B LTR ERV1 3 409 -454 2315 165 23 0 chr12 22984914 22985308 -120801147 - MER57A LTR ERV1 0 403 1 3741 180 98 30 chr12 22985308 22985676 -120800779 + MER21B LTR ERV1 409 863 0 282 238 78 25 chr12 22985865 22986037 -120800418 - L1MC/D LINE L1 -357 5813 5720 243 281 63 143 chr12 22986050 22986413 -120800042 - L2 LINE L2 -7 3306 2973 227 283 159 9 chr12 22986422 22986535 -120799920 - L1MC/D LINE L1 -482 5639 5510 376 344 52 9 chr12 22986544 22986774 -120799681 - L1MC/D LINE L1 -666 5496 5257 822 258 118 44 chr12 22986789 22987511 -120798944 - L1M4 LINE L1 -832 5314 4540 2199 104 30 0 chr12 22987883 22988182 -120798273 - AluSg SINE Alu -2 308 1 24 0 0 0 chr12 22988203 22988227 -120798228 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr12 22988368 22988411 -120798044 + AT_rich Low_complexity Low_complexity 1 43 0 304 297 162 66 chr12 22988411 22989047 -120797408 - HAL1 LINE L1 0 2507 1811 293 282 146 45 chr12 22989060 22989436 -120797019 - HAL1 LINE L1 -1422 1085 672 326 209 0 0 chr12 22989599 22989666 -120796789 + MIR SINE MIR 169 235 -27 212 318 63 0 chr12 22989751 22989814 -120796641 + MIR3 SINE MIR 135 201 -7 1001 188 24 43 chr12 22989856 22990063 -120796392 - MER58A DNA MER1_type 0 224 22 194 274 0 32 chr12 22990306 22990368 -120796087 - MIR3 SINE MIR -21 187 128 590 233 195 19 chr12 22991123 22991333 -120795122 - MIR SINE MIR -3 259 13 321 170 0 0 chr12 22991339 22991392 -120795063 - L2 LINE L2 -1 3271 3219 183 238 24 0 chr12 22991360 22991402 -120795053 - MIR SINE MIR -16 246 204 * 344 333 37 30 chr12 22991499 22991634 -120794821 + L2 LINE L2 3137 3272 0 1864 137 34 17 chr12 22992275 22992568 -120793887 + AluSx SINE Alu 1 298 -14 261 188 0 0 chr12 22992620 22992668 -120793787 + L1MC4 LINE L1 6656 6703 -1339 295 213 31 8 chr12 22992674 22992801 -120793654 + (TA)n Simple_repeat Simple_repeat 1 130 0 2443 43 0 0 chr12 22992861 22993166 -120793289 + AluY SINE Alu 1 305 0 2128 122 0 0 chr12 22993179 22993490 -120792965 - AluSx SINE Alu -1 311 1 1408 103 15 0 chr12 22993997 22994192 -120792263 - L1PA15 LINE L1 -13 6152 5955 24 67 0 0 chr12 22994211 22994256 -120792199 + AT_rich Low_complexity Low_complexity 1 45 0 449 298 53 7 chr12 22995312 22995619 -120790836 - L1M4b LINE L1 -5119 1828 1385 211 305 211 0 chr12 22996168 22996296 -120790159 + L2 LINE L2 3104 3258 -55 420 20 0 0 chr12 22996490 22996539 -120789916 + (CA)n Simple_repeat Simple_repeat 2 50 0 2083 113 7 13 chr12 22997088 22997389 -120789066 - AluSx SINE Alu -13 299 1 2443 81 0 0 chr12 22997408 22997706 -120788749 + AluSg SINE Alu 1 298 -12 189 0 0 0 chr12 22998392 22998413 -120788042 + (TA)n Simple_repeat Simple_repeat 1 21 0 497 352 20 10 chr12 22998593 22998792 -120787663 - MIR SINE MIR -15 247 47 234 0 0 0 chr12 22999597 22999623 -120786832 + (A)n Simple_repeat Simple_repeat 1 26 0 1580 191 0 38 chr12 22999623 22999942 -120786513 + AluJo SINE Alu 1 307 -5 282 257 0 71 chr12 23001767 23001893 -120784562 + L1ME4a LINE L1 5481 5594 -527 412 273 9 9 chr12 23001968 23002078 -120784377 + MIR SINE MIR 123 232 -30 185 340 130 12 chr12 23002670 23002832 -120783623 + MIR SINE MIR 55 235 -27 234 258 102 24 chr12 23002832 23002999 -120783456 + L1ME4a LINE L1 5942 6121 0 736 191 0 0 chr12 23003076 23003207 -120783248 + FLAM_C SINE Alu 1 131 -2 22 80 0 0 chr12 23003249 23003299 -120783156 + AT_rich Low_complexity Low_complexity 1 50 0 456 218 54 57 chr12 23003663 23003943 -120782512 + L1MC5 LINE L1 7493 7771 -190 1030 179 71 9 chr12 23005080 23005292 -120781163 + MER8 DNA MER2_type 13 237 -2 14232 129 38 7 chr12 23005407 23006177 -120780278 - Tigger1 DNA MER2_type 0 2418 1673 2010 81 0 0 chr12 23006177 23006449 -120780006 - AluY SINE Alu 0 307 36 14232 129 38 7 chr12 23006449 23008022 -120778433 - Tigger1 DNA MER2_type -745 1673 1 30 100 0 0 chr12 23008325 23008425 -120778030 + AT_rich Low_complexity Low_complexity 1 100 0 315 194 28 14 chr12 23009246 23009318 -120777137 + L1MCa LINE L1 168 240 -6324 809 224 43 111 chr12 23009366 23009905 -120776550 + L1MCa LINE L1 64 565 -5480 1160 254 68 33 chr12 23010001 23010500 -120775955 + L1MCa LINE L1 571 1068 -4977 2809 148 60 24 chr12 23010506 23011085 -120775370 - LTR36 LTR ERV1 -1 610 11 2444 94 0 0 chr12 23011086 23011395 -120775060 + AluSg SINE Alu 1 309 -1 260 280 30 30 chr12 23011482 23011614 -120774841 - LTR36-int LTR ERV1 -52 8068 7937 316 191 44 0 chr12 23011928 23011996 -120774459 - MER49 LTR ERV1 -163 760 690 880 166 83 48 chr12 23012016 23012245 -120774210 - LTR36-int LTR ERV1 -181 6150 5914 10510 160 32 68 chr12 23012258 23012307 -120774148 - LTR36-int LTR ERV1 -455 5422 5373 1910 150 7 33 chr12 23012307 23012607 -120773848 + AluSx SINE Alu 1 292 -20 10510 160 32 68 chr12 23012607 23015159 -120771296 - LTR36-int LTR ERV1 -504 5373 3023 2637 182 17 36 chr12 23015159 23015735 -120770720 + L1M1 LINE L1 129 693 -6872 591 126 42 42 chr12 23015781 23015900 -120770555 - LTR36-int LTR ERV1 -2392 1893 1775 310 263 75 23 chr12 23015974 23016107 -120770348 - LTR36-int LTR ERV1 -2724 1561 1422 2173 110 3 0 chr12 23016403 23016695 -120769760 + AluSx SINE Alu 1 293 -19 588 287 25 42 chr12 23016769 23017006 -120769449 - LTR36-int LTR ERV1 -1439 347 115 3131 145 61 20 chr12 23017115 23017702 -120768753 - LTR36 LTR ERV1 0 611 1 2736 190 198 62 chr12 23017702 23017913 -120768542 + L1MCa LINE L1 1072 1253 -5463 2459 64 7 0 chr12 23017913 23018209 -120768246 - AluSg SINE Alu -12 298 1 2736 190 198 62 chr12 23018209 23019469 -120766986 + L1MCa LINE L1 1253 2764 -3952 412 303 71 55 chr12 23019499 23019946 -120766509 - MLT1H1 LTR MaLR -4 545 36 584 250 60 12 chr12 23020054 23020222 -120766233 + MIR SINE MIR 87 262 0 354 337 48 18 chr12 23020219 23020385 -120766070 + MIR3 SINE MIR 32 202 -6 * 683 186 8 8 chr12 23020572 23020701 -120765754 - FLAM_C SINE Alu -14 129 1 396 77 231 0 chr12 23020845 23020910 -120765545 + MADE1 DNA Mariner 1 80 0 219 326 14 83 chr12 23020958 23021102 -120765353 - L2 LINE L2 -457 2857 2724 888 266 107 15 chr12 23021707 23022110 -120764345 + LTR16A LTR ERVL 1 440 -10 261 0 0 0 chr12 23022356 23022385 -120764070 + (T)n Simple_repeat Simple_repeat 1 29 0 1983 112 11 11 chr12 23022982 23023267 -120763188 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr12 23023267 23023305 -120763150 + (CA)n Simple_repeat Simple_repeat 2 39 0 478 239 80 14 chr12 23023364 23023502 -120762953 - MIR SINE MIR -62 200 54 484 319 33 16 chr12 23023553 23023735 -120762720 + MER5A DNA MER1_type 1 185 -4 427 301 26 39 chr12 23023968 23024124 -120762331 + MER5B DNA MER1_type 25 178 0 2051 134 151 3 chr12 23026539 23026911 -120759544 + MSTA LTR MaLR 2 428 0 232 247 49 62 chr12 23027657 23027738 -120758717 - L2 LINE L2 -2 3311 3232 427 328 29 18 chr12 23028903 23029074 -120757381 + L2 LINE L2 62 234 -3080 649 291 109 53 chr12 23029126 23029230 -120757225 + L2 LINE L2 2308 2405 -909 1787 151 67 20 chr12 23029230 23029588 -120756867 + THE1C LTR MaLR 1 375 0 649 291 109 53 chr12 23029588 23029951 -120756504 + L2 LINE L2 2405 2801 -513 2104 150 0 0 chr12 23030120 23030414 -120756041 - AluSx SINE Alu -18 294 1 288 275 83 25 chr12 23030452 23030572 -120755883 + L2 LINE L2 3185 3311 -2 2318 99 0 0 chr12 23031598 23031890 -120754565 - AluSc SINE Alu -17 292 1 1770 156 39 0 chr12 23031892 23032175 -120754280 - AluJb SINE Alu -17 295 2 222 276 25 98 chr12 23033052 23033215 -120753240 + L2 LINE L2 2906 3056 -216 206 333 50 0 chr12 23033296 23033356 -120753099 + L2 LINE L2 3251 3313 0 234 0 0 0 chr12 23033489 23033515 -120752940 + (TA)n Simple_repeat Simple_repeat 2 27 0 2506 51 0 0 chr12 23033515 23033811 -120752644 - AluY SINE Alu -15 296 1 16668 197 27 40 chr12 23034821 23039524 -120746931 - L1PA13 LINE L1 -1 7600 3342 2883 10 0 0 chr12 23039524 23039836 -120746619 + AluYb8 SINE Alu 1 312 -6 16668 197 27 40 chr12 23039836 23043138 -120743317 - L1PA13 LINE L1 -4259 3342 1 195 307 22 80 chr12 23044236 23044373 -120742082 + L2 LINE L2 3141 3269 -3 3339 141 46 5 chr12 23044608 23045208 -120741247 - Tigger1 DNA MER2_type -1 2417 1793 1910 128 37 35 chr12 23045208 23045582 -120740873 - THE1C LTR MaLR 0 375 1 * 5730 117 20 13 chr12 23045582 23046517 -120739938 - Tigger1 DNA MER2_type -621 1797 856 1118 162 5 0 chr12 23046536 23046734 -120739721 + L1PB1 LINE L1 2 200 -6663 511 107 0 0 chr12 23046734 23046809 -120739646 + L1PB1 LINE L1 634 708 -6155 6605 169 24 7 chr12 23046809 23046886 -120739569 + L1PB1 LINE L1 4530 4604 -2263 2423 92 0 0 chr12 23046886 23047181 -120739274 + AluSc SINE Alu 1 295 -14 6605 169 24 7 chr12 23047181 23049407 -120737048 + L1PB1 LINE L1 4604 6867 0 4648 152 15 42 chr12 23049459 23050380 -120736075 - Tigger1 DNA MER2_type -1522 896 1 21 57 0 0 chr12 23050520 23050555 -120735900 + AT_rich Low_complexity Low_complexity 1 35 0 979 192 67 67 chr12 23050824 23050906 -120735549 + L1 LINE L1 2879 2960 -3186 2214 112 0 3 chr12 23050906 23051201 -120735254 + AluSx SINE Alu 2 295 -17 979 192 67 67 chr12 23051201 23051504 -120734951 + L1 LINE L1 2959 3264 -2882 425 293 178 11 chr12 23051505 23051696 -120734759 + MIR SINE MIR 36 258 -4 855 161 0 0 chr12 23051985 23052109 -120734346 - FLAM_C SINE Alu -19 124 1 745 121 26 0 chr12 23052163 23052279 -120734176 + FLAM_C SINE Alu 18 136 -7 3094 96 18 4 chr12 23053037 23053494 -120732961 + LTR8 LTR ERV1 8 470 -221 639 155 9 9 chr12 23053611 23053727 -120732728 + LTR8 LTR ERV1 469 584 -107 191 312 173 35 chr12 23053889 23054091 -120732364 + L2 LINE L2 2037 2266 -1048 2346 74 0 7 chr12 23054164 23054460 -120731995 - AluSx SINE Alu -1 311 18 4527 161 47 5 chr12 23055044 23055837 -120730618 - LTR1B LTR ERV1 0 826 1 259 238 16 32 chr12 23057054 23057117 -120729338 - L2 LINE L2 -1 3271 3210 1944 139 23 13 chr12 23058011 23058313 -120728142 - AluSx SINE Alu -7 305 1 326 333 82 58 chr12 23058477 23058771 -120727684 + L2 LINE L2 333 633 -2681 2206 114 0 10 chr12 23059468 23059767 -120726688 - AluSx SINE Alu -16 296 1 293 392 39 15 chr12 23059955 23060159 -120726296 - MIR SINE MIR -46 216 8 1917 179 0 0 chr12 23060202 23060509 -120725946 + AluJb SINE Alu 1 307 -5 3239 191 50 42 chr12 23060599 23061418 -120725037 - LTR1B LTR ERV1 0 826 1 514 313 30 12 chr12 23061733 23061899 -120724556 + L3 LINE CR1 988 1156 -421 295 210 0 16 chr12 23062020 23062082 -120724373 + L3 LINE CR1 1229 1289 -288 216 0 0 0 chr12 23062101 23062125 -120724330 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 618 347 25 12 chr12 23062134 23062376 -120724079 + MIR SINE MIR 5 249 -13 1175 130 0 0 chr12 23062384 23062545 -120723910 - AluSg/x SINE Alu -18 292 132 2220 109 3 0 chr12 23062545 23062838 -120723617 - AluSx SINE Alu -18 294 1 270 353 0 0 chr12 23062889 23062974 -120723481 + L3 LINE CR1 1491 1575 -2 26 30 0 0 chr12 23063473 23063506 -120722949 + AT_rich Low_complexity Low_complexity 1 33 0 694 181 0 0 chr12 23063507 23063623 -120722832 - AluJb SINE Alu -196 116 1 998 161 33 0 chr12 23063933 23064113 -120722342 + THE1B LTR MaLR 1 186 -178 250 108 0 0 chr12 23064124 23064161 -120722294 + THE1B LTR MaLR 328 364 0 1651 95 0 0 chr12 23064161 23064402 -120722053 + THE1A-int LTR MaLR 1 241 -1339 6913 91 11 0 chr12 23064413 23065371 -120721084 + THE1A-int LTR MaLR 606 1574 -6 2037 157 14 3 chr12 23065373 23065724 -120720731 + THE1A LTR MaLR 1 355 0 25 31 0 0 chr12 23065859 23065891 -120720564 + AT_rich Low_complexity Low_complexity 1 32 0 2135 188 98 82 chr12 23066312 23066796 -120719659 - LTR8A LTR ERV1 -4 723 223 2385 132 5 24 chr12 23066796 23067167 -120719288 - THE1B LTR MaLR 0 364 1 2135 188 98 82 chr12 23067167 23067363 -120719092 - LTR8A LTR ERV1 -504 223 32 187 271 21 21 chr12 23068241 23068289 -120718166 + MIR SINE MIR 98 145 -63 203 61 30 0 chr12 23068419 23068452 -120718003 + (TC)n Simple_repeat Simple_repeat 1 34 0 226 301 120 6 chr12 23068839 23069022 -120717433 - L1ME4a LINE L1 -72 6049 5846 1963 142 0 14 chr12 23069119 23069415 -120717040 + AluJb SINE Alu 9 300 -12 22 35 0 0 chr12 23069460 23069489 -120716966 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 23069515 23069539 -120716916 + AT_rich Low_complexity Low_complexity 1 24 0 7199 51 7 0 chr12 23071864 23073233 -120713222 - L1PA7 LINE L1 -2 6152 4780 5570 83 0 6 chr12 23073233 23074036 -120712419 + L1PA7 LINE L1 3974 4771 -1375 216 0 0 0 chr12 23074117 23074141 -120712314 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1029 262 88 30 chr12 23075135 23075779 -120710676 + L1M4 LINE L1 4226 4907 -1239 40466 36 24 2 chr12 23075794 23081836 -120704619 + L1PA3 LINE L1 1 6567 -20 3003 42 3 16 chr12 23081836 23082221 -120704234 + L1PA5 LINE L1 5770 6149 -5 40466 36 24 2 chr12 23082221 23082243 -120704212 + L1PA3 LINE L1 6567 6587 0 530 288 48 33 chr12 23082263 23082659 -120703796 + L1M4 LINE L1 4932 5333 -813 3482 167 46 15 chr12 23082720 23083392 -120703063 + L1M1 LINE L1 16 708 -6857 6136 96 29 50 chr12 23083393 23083481 -120702974 + L1M1 LINE L1 2110 2198 -5367 2102 122 0 7 chr12 23083481 23083801 -120702654 - AluSx SINE Alu 0 318 1 6136 96 29 50 chr12 23083801 23084689 -120701766 + L1M1 LINE L1 2198 3103 -4462 2431 78 7 0 chr12 23084689 23084996 -120701459 + AluY SINE Alu 1 309 -2 6136 96 29 50 chr12 23084996 23085087 -120701368 + L1M1 LINE L1 3103 3156 -4409 2022 133 3 3 chr12 23085087 23085373 -120701082 + AluSx SINE Alu 1 286 -26 6136 96 29 50 chr12 23085373 23085444 -120701011 + L1M1 LINE L1 3156 3227 -4338 28946 110 11 67 chr12 23085455 23091977 -120694478 + L1PA7 LINE L1 12 6153 -1 6123 230 52 28 chr12 23091974 23094367 -120692088 + L1ME1 LINE L1 3326 5784 -382 * 1869 209 90 11 chr12 23094367 23094835 -120691620 - MLT1D LTR MaLR 0 505 1 6123 230 52 28 chr12 23094835 23095204 -120691251 + L1ME1 LINE L1 5784 6143 -23 298 243 0 0 chr12 23095270 23095340 -120691115 - L1ME LINE L1 -617 5547 5478 * 313 159 16 16 chr12 23095331 23095394 -120691061 + L1ME LINE L1 5528 5590 -580 852 285 89 47 chr12 23095401 23095896 -120690559 - MLT1F LTR MaLR -11 531 16 342 241 0 117 chr12 23096105 23096250 -120690205 - MLT1F-int LTR MaLR -171 1200 1073 2054 129 0 3 chr12 23096322 23096609 -120689846 - AluSx SINE Alu -21 291 6 264 304 55 17 chr12 23097262 23097443 -120689012 - MLT1F-int LTR MaLR -832 539 352 248 224 0 15 chr12 23097542 23097609 -120688846 - MLT1F-int LTR MaLR -1301 70 5 349 234 123 58 chr12 23097613 23097858 -120688597 - MLT1H1 LTR MaLR 0 555 323 252 310 63 7 chr12 23098075 23098217 -120688238 + HAL1b LINE L1 1187 1336 -12 2027 153 31 0 chr12 23098839 23099133 -120687322 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 23099292 23099314 -120687141 + AT_rich Low_complexity Low_complexity 1 22 0 295 332 109 26 chr12 23099333 23099562 -120686893 - MIR SINE MIR -12 250 3 537 282 129 53 chr12 23100274 23100682 -120685773 - Charlie8 DNA MER1_type -2143 274 1 4902 33 0 2 chr12 23101233 23101810 -120684645 - L1PA5 LINE L1 -11 6143 5568 422 285 90 62 chr12 23101897 23102153 -120684302 - L2 LINE L2 -20 3293 3031 1823 231 112 50 chr12 23102224 23102646 -120683809 + L1ME1 LINE L1 5458 5937 -229 2048 139 7 0 chr12 23102646 23102941 -120683514 + AluSx SINE Alu 2 298 -14 1823 231 112 50 chr12 23102941 23103181 -120683274 + L1ME1 LINE L1 5937 6161 -5 2121 134 0 0 chr12 23103939 23104238 -120682217 - AluSx SINE Alu -13 299 1 742 134 8 8 chr12 23104263 23104390 -120682065 + THE1C-int LTR MaLR 1454 1580 0 2571 119 0 11 chr12 23104390 23104769 -120681686 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr12 23106525 23106553 -120679902 + AT_rich Low_complexity Low_complexity 1 28 0 2161 106 20 0 chr12 23106556 23106857 -120679598 + AluSp SINE Alu 1 307 -6 421 301 35 38 chr12 23106884 23107200 -120679255 + L1MEd LINE L1 943 1257 -4862 22 0 0 0 chr12 23107246 23107268 -120679187 + AT_rich Low_complexity Low_complexity 1 22 0 230 70 23 23 chr12 23107618 23107661 -120678794 + L1ME2 LINE L1 4989 5031 -1115 24 32 0 0 chr12 23107711 23107742 -120678713 + AT_rich Low_complexity Low_complexity 1 31 0 497 91 0 0 chr12 23107750 23107827 -120678628 - L1MA7 LINE L1 -2 6289 6213 2667 206 105 35 chr12 23107828 23108646 -120677809 + L1ME2 LINE L1 5022 5781 -383 1868 119 129 78 chr12 23108646 23109057 -120677398 - MSTB1 LTR MaLR 0 432 1 2126 116 0 35 chr12 23109059 23109391 -120677064 + AluSx SINE Alu 1 312 0 2667 206 105 35 chr12 23109391 23109522 -120676933 + L1ME2 LINE L1 5781 5901 -263 2496 62 0 3 chr12 23109522 23109827 -120676628 - AluY SINE Alu -7 304 1 2667 206 105 35 chr12 23109827 23109943 -120676512 + L1ME2 LINE L1 5901 6155 -9 592 204 25 45 chr12 23109958 23110115 -120676340 + L1MC4 LINE L1 5425 5578 -2230 1398 253 60 21 chr12 23110151 23110258 -120676197 + L1MC4 LINE L1 7461 7562 -480 2428 71 0 3 chr12 23110258 23110568 -120675887 + AluY SINE Alu 1 309 -2 1398 253 60 21 chr12 23110568 23110990 -120675465 + L1MC4 LINE L1 7562 8011 -31 1873 176 7 0 chr12 23111001 23111297 -120675158 - AluJb SINE Alu -14 298 1 25 65 0 0 chr12 23111306 23111352 -120675103 + AT_rich Low_complexity Low_complexity 1 46 0 1505 98 0 69 chr12 23112085 23112331 -120674124 + MER30 DNA MER1_type 1 229 -1 2928 262 51 52 chr12 23112861 23113985 -120672470 + HsTC2 DNA Tc2 7 1129 -769 25 0 0 0 chr12 23114032 23114057 -120672398 + AT_rich Low_complexity Low_complexity 1 25 0 678 287 33 37 chr12 23114075 23114504 -120671951 - L1M4 LINE L1 -1569 4577 4151 552 30 0 0 chr12 23114560 23114626 -120671829 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2347 80 7 0 chr12 23114644 23114944 -120671511 - AluY SINE Alu -9 302 1 234 286 50 8 chr12 23115096 23115215 -120671240 - L1M4 LINE L1 -2231 3915 3792 2552 251 74 27 chr12 23115617 23115880 -120670575 + L1ME1 LINE L1 3091 3340 -2806 1601 163 58 34 chr12 23115880 23116174 -120670281 + AluSx SINE Alu 1 301 -11 2552 251 74 27 chr12 23116174 23116988 -120669467 + L1ME1 LINE L1 3340 4219 -1927 783 116 0 36 chr12 23117046 23117175 -120669280 + L1MA1 LINE L1 6014 6139 -163 7624 26 0 1 chr12 23117175 23118508 -120667947 + L1PA4 LINE L1 4821 6152 -3 1236 71 18 6 chr12 23118533 23118703 -120667752 + L1MA1 LINE L1 6131 6302 0 341 194 107 0 chr12 23118721 23118824 -120667631 + L1ME1 LINE L1 5158 5271 -875 2286 231 98 28 chr12 23118958 23119680 -120666775 + L1ME1 LINE L1 5389 6161 -5 9248 168 72 83 chr12 23119948 23121655 -120664800 + L1MC1 LINE L1 6 1730 -4696 2084 145 30 6 chr12 23121655 23122020 -120664435 - THE1C LTR MaLR 0 375 2 9248 168 72 83 chr12 23122020 23122887 -120663568 + L1MC1 LINE L1 1730 2605 -3821 1552 167 28 31 chr12 23122887 23123175 -120663280 + AluJo SINE Alu 12 298 -14 9248 168 72 83 chr12 23123175 23123783 -120662672 + L1MC1 LINE L1 2605 3295 -3131 1800 186 0 0 chr12 23123783 23124084 -120662371 + AluJb SINE Alu 1 301 -11 9248 168 72 83 chr12 23124084 23124171 -120662284 + L1MC1 LINE L1 3295 3381 -3045 5975 142 17 47 chr12 23124158 23125302 -120661153 + L1MC1 LINE L1 5495 6602 -11 * 21 36 0 0 chr12 23125526 23125554 -120660901 + AT_rich Low_complexity Low_complexity 1 28 0 226 307 30 40 chr12 23125609 23125710 -120660745 + MIR3 SINE MIR 78 177 -31 803 236 66 84 chr12 23126003 23126237 -120660218 + L1M1 LINE L1 2718 2955 -4791 794 173 0 0 chr12 23126237 23126370 -120660085 + FLAM_C SINE Alu 1 133 0 803 236 66 84 chr12 23126370 23126830 -120659625 + L1M1 LINE L1 2955 3473 -4273 369 260 0 0 chr12 23126864 23126937 -120659518 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2553 132 63 5 chr12 23126934 23127360 -120659095 + Tigger3(Golem) DNA MER2_type 2577 3027 -2 679 258 41 38 chr12 23127360 23127651 -120658804 + L1MEc LINE L1 2211 2502 -3894 1079 252 89 33 chr12 23127770 23128225 -120658230 - MER76 LTR ERV -34 654 101 2312 171 31 19 chr12 23128225 23128646 -120657809 + MSTB LTR MaLR 1 426 0 1079 252 89 33 chr12 23128646 23128754 -120657701 - MER76 LTR ERV -587 101 1 894 271 148 7 chr12 23128791 23128906 -120657549 + L1MEc LINE L1 2551 2648 -3567 2395 164 16 30 chr12 23128906 23129345 -120657110 + Tigger2a DNA MER2_type 1 433 -1 894 271 148 7 chr12 23129345 23129668 -120656787 + L1MEc LINE L1 2648 3051 -3164 3475 160 40 18 chr12 23129986 23130643 -120655812 - LTR51 LTR ERV1 0 671 1 276 233 0 17 chr12 23130643 23130703 -120655752 - MER106A DNA MER1_type -177 59 1 687 303 26 34 chr12 23130731 23130965 -120655490 - HERVL LTR ERVL -1102 4552 4321 671 350 43 12 chr12 23131041 23131298 -120655157 + ERVL LTR ERVL 4093 4357 -1407 2481 73 3 6 chr12 23134165 23134479 -120651976 + AluSp SINE Alu 1 313 0 243 0 0 0 chr12 23134698 23134725 -120651730 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 816 161 15 0 chr12 23134731 23134868 -120651587 - U1 snRNA snRNA 0 165 27 414 0 0 0 chr12 23137786 23137832 -120648623 + (CA)n Simple_repeat Simple_repeat 2 47 0 855 201 34 57 chr12 23138032 23138241 -120648214 - MER20 DNA MER1_type -9 210 7 800 133 0 0 chr12 23138408 23138528 -120647927 - AluSg/x SINE Alu -1 308 189 21 36 0 0 chr12 23138900 23138928 -120647527 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 0 chr12 23139664 23139703 -120646752 + (TATG)n Simple_repeat Simple_repeat 4 42 0 28 0 0 0 chr12 23140342 23140370 -120646085 + AT_rich Low_complexity Low_complexity 1 28 0 236 264 139 0 chr12 23141690 23141762 -120644693 + MIR3 SINE MIR 124 205 -3 267 133 0 0 chr12 23142455 23142500 -120643955 + (GA)n Simple_repeat Simple_repeat 2 46 0 231 258 91 15 chr12 23143113 23143179 -120643276 - MER5A DNA MER1_type 0 189 119 563 198 0 0 chr12 23143517 23143628 -120642827 - L1MA9 LINE L1 -4 6308 6198 202 250 0 52 chr12 23144598 23144694 -120641761 + A-rich Low_complexity Low_complexity 4 94 0 616 151 0 0 chr12 23144904 23144997 -120641458 + AluJ/FLAM SINE Alu 6 98 -214 34933 33 1 0 chr12 23245814 23250844 -120535611 + L1PA2 LINE L1 1117 6150 -5 1553 219 175 16 chr12 23250844 23251392 -120535063 - L1MEc LINE L1 -3123 3417 2783 462 235 62 8 chr12 23251391 23251555 -120534900 - L1MEc LINE L1 -5044 1496 1320 * 2023 180 171 35 chr12 23251558 23252130 -120534325 - L1MA9 LINE L1 -38 6274 5625 870 235 56 42 chr12 23252135 23252556 -120533899 - L1MEc LINE L1 -5168 1362 986 292 316 39 96 chr12 23252807 23253035 -120533420 - L1MEc LINE L1 -6017 704 499 2345 100 0 3 chr12 23253035 23253345 -120533110 + AluSg SINE Alu 1 309 -1 292 316 39 96 chr12 23253345 23253448 -120533007 - L1MEc LINE L1 -6222 499 392 199 234 78 16 chr12 23254497 23254561 -120531894 - L2 LINE L2 -5 3308 3241 402 312 89 47 chr12 23254620 23255001 -120531454 - L2 LINE L2 -40 3273 2877 314 271 187 0 chr12 23255719 23255874 -120530581 - L2 LINE L2 -11 3302 3119 186 264 0 0 chr12 23255895 23255948 -120530507 + MIR SINE MIR 73 125 -137 206 213 0 0 chr12 23257919 23257966 -120528489 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr12 23258957 23258978 -120527477 + AT_rich Low_complexity Low_complexity 1 21 0 201 200 25 0 chr12 23259446 23259486 -120526969 + L2 LINE L2 3190 3230 -83 193 178 43 0 chr12 23260084 23260127 -120526328 + MIR SINE MIR 94 149 -64 246 309 103 0 chr12 23260233 23260330 -120526125 - L2 LINE L2 -3 3269 3163 206 293 114 29 chr12 23260945 23261085 -120525370 + L2 LINE L2 3162 3313 0 2398 130 0 16 chr12 23261923 23262293 -120524162 - THE1B LTR MaLR 0 364 1 1176 269 102 26 chr12 23262514 23263201 -120523254 - L2 LINE L2 -5 3308 2575 2592 209 22 0 chr12 23263210 23263245 -120523210 - MLT2B2 LTR ERVL -15 500 467 450 0 0 0 chr12 23263245 23263295 -120523160 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2592 209 22 0 chr12 23263295 23263748 -120522707 - MLT2B2 LTR ERVL -48 467 1 291 273 206 26 chr12 23263748 23263942 -120522513 - L2 LINE L2 -736 2578 2350 422 331 99 15 chr12 23264060 23264838 -120521617 + L1ME1 LINE L1 1763 2629 -4092 871 291 52 5 chr12 23264899 23265321 -120521134 + L1ME1 LINE L1 3835 4276 -2264 228 288 0 17 chr12 23265480 23265539 -120520916 + L1ME1 LINE L1 4446 4503 -2037 21 71 0 0 chr12 23265561 23265603 -120520852 + AT_rich Low_complexity Low_complexity 1 42 0 1259 282 127 25 chr12 23265723 23265924 -120520531 + L1ME1 LINE L1 4772 4951 -1589 252 0 0 0 chr12 23265924 23265952 -120520503 + (TG)n Simple_repeat Simple_repeat 1 28 0 1259 282 127 25 chr12 23265952 23266655 -120519800 + L1ME1 LINE L1 4951 5768 -772 2265 96 0 3 chr12 23267967 23268269 -120518186 + AluSg1 SINE Alu 1 301 -8 421 303 19 49 chr12 23268903 23269065 -120517390 + MIR3 SINE MIR 42 198 -10 373 256 73 80 chr12 23270205 23270342 -120516113 - L2 LINE L2 0 3272 3137 2105 255 85 2 chr12 23270604 23271416 -120515039 + L1M4 LINE L1 4077 4955 -1191 1148 198 87 5 chr12 23272213 23272665 -120513790 - MER34 LTR ERV1 0 542 27 1116 285 85 8 chr12 23273003 23273368 -120513087 + MER69 DNA AcHobo 1 393 -2133 2998 240 61 19 chr12 23273737 23274770 -120511685 + MER69 DNA AcHobo 1451 2526 0 937 196 11 32 chr12 23274919 23275108 -120511347 - MER5A DNA MER1_type -2 187 3 318 307 73 20 chr12 23275121 23275271 -120511184 + L2 LINE L2 1519 1676 -1638 1677 269 161 34 chr12 23275280 23276513 -120509942 + L2 LINE L2 1917 3313 0 2825 10 0 0 chr12 23277259 23277566 -120508889 - AluYa5 SINE Alu -4 307 1 275 0 0 28 chr12 23277655 23277691 -120508764 + (CA)n Simple_repeat Simple_repeat 2 36 0 7374 41 3 1 chr12 23277809 23279504 -120506951 + L1PA5 LINE L1 4459 6154 0 1350 235 92 29 chr12 23279507 23280055 -120506400 + L1ME1 LINE L1 5962 6689 -17 1322 197 122 3 chr12 23280109 23280404 -120506051 - MER7A DNA MER2_type 0 346 19 295 283 72 36 chr12 23280426 23280564 -120505891 + L1ME3 LINE L1 6018 6160 -2 450 0 0 0 chr12 23281641 23281691 -120504764 + (TG)n Simple_repeat Simple_repeat 2 51 0 23 150 0 0 chr12 23282316 23282356 -120504099 + AT_rich Low_complexity Low_complexity 1 40 0 381 93 0 0 chr12 23282488 23282507 -120503948 + (CA)n Simple_repeat Simple_repeat 1 73 0 381 93 0 0 chr12 23282507 23282561 -120503894 + (CA)n Simple_repeat Simple_repeat 2 55 0 636 293 112 24 chr12 23282754 23283188 -120503267 + MLT1H1 LTR MaLR 42 519 -36 301 196 0 0 chr12 23283264 23283320 -120503135 - MLT1H LTR MaLR 0 549 494 1199 144 65 5 chr12 23283331 23283532 -120502923 - MER58A DNA MER1_type -10 214 2 1642 205 66 88 chr12 23283532 23284030 -120502425 - MLT1H LTR MaLR -49 500 14 209 339 0 0 chr12 23284086 23284145 -120502310 - MIR SINE MIR -59 149 91 1890 170 37 49 chr12 23284340 23284890 -120501565 + MLT2A2 LTR ERVL 1 546 -8 360 0 0 0 chr12 23287344 23287384 -120499071 + (CA)n Simple_repeat Simple_repeat 1 40 0 402 241 9 18 chr12 23287481 23287593 -120498862 - MER102a DNA MER1_type -6 324 214 452 249 67 84 chr12 23287685 23287910 -120498545 - MER102a DNA MER1_type -108 222 2 206 213 0 82 chr12 23287925 23287986 -120498469 - L2 LINE L2 -695 2619 2564 966 255 41 4 chr12 23288536 23288779 -120497676 + MIR SINE MIR 8 259 -3 502 337 49 0 chr12 23288803 23288966 -120497489 + MIR SINE MIR 6 176 -86 523 188 20 0 chr12 23289208 23289309 -120497146 + FLAM_C SINE Alu 1 103 -40 237 33 0 0 chr12 23289685 23289715 -120496740 + (TG)n Simple_repeat Simple_repeat 1 30 0 474 311 69 47 chr12 23290674 23291089 -120495366 - L2 LINE L2 -126 3187 2761 241 315 31 47 chr12 23292610 23292737 -120493718 - MIR SINE MIR -108 154 30 285 75 0 0 chr12 23292906 23292946 -120493509 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 88 0 0 chr12 23295693 23295727 -120490728 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr12 23295913 23295946 -120490509 + AT_rich Low_complexity Low_complexity 1 33 0 333 118 0 0 chr12 23297889 23297940 -120488515 + (TA)n Simple_repeat Simple_repeat 1 51 0 239 194 69 0 chr12 23297940 23298012 -120488443 - L1MCa LINE L1 -4358 2068 1992 330 132 0 0 chr12 23298079 23298132 -120488323 + (TA)n Simple_repeat Simple_repeat 1 53 0 518 132 37 31 chr12 23298166 23298412 -120488043 + GA-rich Low_complexity Low_complexity 1 247 0 207 162 0 0 chr12 23298626 23298663 -120487792 + (CA)n Simple_repeat Simple_repeat 1 37 0 546 295 120 13 chr12 23299165 23299399 -120487056 - MIR SINE MIR -2 260 2 401 0 20 0 chr12 23300121 23300170 -120486285 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr12 23300550 23300573 -120485882 + AT_rich Low_complexity Low_complexity 1 23 0 1759 309 131 27 chr12 23302456 23303695 -120482760 + L2 LINE L2 1835 3222 -91 1719 127 0 12 chr12 23303695 23303947 -120482508 - AluSx SINE Alu 0 312 64 1759 309 131 27 chr12 23303947 23304013 -120482442 + L2 LINE L2 3222 3280 -33 290 195 35 11 chr12 23304055 23304142 -120482313 + (TA)n Simple_repeat Simple_repeat 2 90 0 219 182 0 91 chr12 23304330 23304396 -120482059 + G-rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr12 23304415 23304450 -120482005 + GC_rich Low_complexity Low_complexity 1 35 0 180 217 0 0 chr12 23304464 23304510 -120481945 + G-rich Low_complexity Low_complexity 1 46 0 213 250 0 0 chr12 23304543 23304587 -120481868 + G-rich Low_complexity Low_complexity 1 44 0 270 0 0 0 chr12 23304844 23304874 -120481581 + (TA)n Simple_repeat Simple_repeat 1 30 0 183 80 0 0 chr12 23304873 23304898 -120481557 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 805 127 0 8 chr12 23304920 23305038 -120481417 + FLAM_C SINE Alu 5 121 -22 47 33 0 0 chr12 23305039 23305100 -120481355 + AT_rich Low_complexity Low_complexity 1 61 0 1778 157 20 10 chr12 23305998 23306291 -120480164 + AluJo SINE Alu 1 296 -16 1638 149 51 4 chr12 23306529 23306683 -120479772 - AluJo SINE Alu -24 288 114 180 0 0 0 chr12 23306683 23306703 -120479752 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1638 149 51 4 chr12 23306703 23306823 -120479632 - AluJo SINE Alu -198 114 1 23 0 0 0 chr12 23307176 23307199 -120479256 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 23308814 23308849 -120477606 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr12 23309111 23309131 -120477324 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 349 33 13 chr12 23309420 23309572 -120476883 - MIR SINE MIR -95 167 13 2218 225 65 41 chr12 23310828 23311530 -120474925 + L1ME3 LINE L1 5237 5954 -208 1604 190 53 10 chr12 23311526 23312100 -120474355 + L1ME LINE L1 4898 5587 -579 * 3589 59 6 2 chr12 23312094 23312585 -120473870 - L1P LINE L1 -2553 3593 3101 788 37 37 0 chr12 23312715 23312823 -120473632 - L1P LINE L1 -6032 114 3 713 263 36 33 chr12 23312954 23313289 -120473166 + L1M4 LINE L1 3205 3540 -2606 1742 271 46 2 chr12 23313324 23313914 -120472541 + L1M4 LINE L1 3631 4246 -1900 2411 233 56 11 chr12 23314094 23315098 -120471357 - L1ME LINE L1 -398 5766 4687 1830 114 0 19 chr12 23315098 23315384 -120471071 - AluSc SINE Alu 0 302 22 2411 233 56 11 chr12 23315384 23315580 -120470875 - L1ME LINE L1 -1477 4687 4501 180 193 0 45 chr12 23315686 23315774 -120470681 + C-rich Low_complexity Low_complexity 2 85 0 21 36 0 0 chr12 23315925 23315953 -120470502 + GC_rich Low_complexity Low_complexity 1 28 0 441 306 18 14 chr12 23316470 23316631 -120469824 + MIR SINE MIR 2 171 -37 333 173 67 29 chr12 23316700 23316804 -120469651 + L1M4 LINE L1 5242 5349 -797 544 335 73 11 chr12 23316807 23317094 -120469361 - L2 LINE L2 -634 2680 2376 214 211 0 35 chr12 23317106 23317163 -120469292 + MIR SINE MIR 196 250 -12 263 91 0 23 chr12 23317740 23317784 -120468671 + (GGA)n Simple_repeat Simple_repeat 3 45 0 237 341 12 0 chr12 23317806 23317888 -120468567 - MIR SINE MIR -30 232 150 248 257 14 0 chr12 23318226 23318296 -120468159 + MLT1J1 LTR MaLR 374 444 -2 240 98 122 0 chr12 23318319 23318360 -120468095 - MIR SINE MIR -108 154 109 208 155 86 35 chr12 23319060 23319118 -120467337 - MIR SINE MIR -90 172 112 1987 151 0 3 chr12 23320615 23320914 -120465541 - AluJb SINE Alu -14 298 1 341 306 150 38 chr12 23321319 23321718 -120464737 + L2 LINE L2 2069 2512 -802 211 343 10 20 chr12 23321966 23322068 -120464387 + L2 LINE L2 2866 2966 -306 2202 110 36 36 chr12 23323393 23323757 -120462698 - THE1B LTR MaLR 0 364 1 847 269 84 45 chr12 23323864 23324221 -120462234 + MLT1H LTR MaLR 1 371 -178 253 229 49 0 chr12 23324771 23324832 -120461623 + L2 LINE L2 3209 3272 0 2322 179 58 52 chr12 23327107 23327611 -120458844 - MLT2B2 LTR ERVL -8 507 1 417 348 88 48 chr12 23327764 23328118 -120458337 - L2 LINE L2 -19 3253 2886 190 222 89 0 chr12 23328577 23328622 -120457833 + L2 LINE L2 3265 3313 0 531 284 115 0 chr12 23329664 23329872 -120456583 + MIR SINE MIR 29 260 -2 804 244 44 36 chr12 23330018 23330268 -120456187 - MIR SINE MIR 0 262 11 187 354 0 15 chr12 23332143 23332208 -120454247 - L3 LINE CR1 0 1577 1514 21 0 0 0 chr12 23332683 23332704 -120453751 + AT_rich Low_complexity Low_complexity 1 21 0 241 293 13 0 chr12 23334269 23334344 -120452111 + MIR SINE MIR 187 262 0 1307 221 62 15 chr12 23334455 23334780 -120451675 + MER2 DNA MER2_type 1 340 -4 207 327 188 0 chr12 23335110 23335211 -120451244 + MIR3 SINE MIR 64 183 -25 243 0 0 0 chr12 23335214 23335241 -120451214 + (T)n Simple_repeat Simple_repeat 1 27 0 1717 146 62 46 chr12 23337991 23338360 -120448095 + THE1C LTR MaLR 1 375 0 1558 160 3 35 chr12 23338440 23338722 -120447733 + AluSg1 SINE Alu 36 308 -1 231 303 13 33 chr12 23339336 23339488 -120446967 + GA-rich Low_complexity Low_complexity 1 149 0 188 353 88 0 chr12 23339738 23339840 -120446615 + L2 LINE L2 2916 3026 -246 2803 126 6 78 chr12 23339897 23340447 -120446008 - L1MA4A LINE L1 0 6303 5794 953 188 30 25 chr12 23340650 23340871 -120445584 + AluJo SINE Alu 84 305 0 1315 196 84 43 chr12 23341363 23341709 -120444746 + MLT1A1 LTR MaLR 1 360 -5 228 211 0 44 chr12 23342371 23342461 -120443994 + GA-rich Low_complexity Low_complexity 4 89 0 1033 80 29 11 chr12 23342464 23342639 -120443816 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 552 193 14 7 chr12 23342641 23342781 -120443674 + GA-rich Low_complexity Low_complexity 2 142 0 180 310 16 8 chr12 23342786 23342915 -120443540 + A-rich Low_complexity Low_complexity 4 133 0 708 193 48 37 chr12 23343162 23343349 -120443106 - MER53 DNA DNA 0 189 1 225 239 159 74 chr12 23344296 23344459 -120441996 - L3b LINE CR1 -284 1299 1123 239 333 23 0 chr12 23344584 23344671 -120441784 + MIR SINE MIR 60 148 -114 201 74 0 0 chr12 23345053 23345080 -120441375 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr12 23345119 23345147 -120441308 + AT_rich Low_complexity Low_complexity 1 28 0 2268 102 0 7 chr12 23345456 23345759 -120440696 - AluSx SINE Alu -11 301 1 225 0 0 0 chr12 23345793 23345818 -120440637 + (A)n Simple_repeat Simple_repeat 1 25 0 1518 236 61 16 chr12 23347345 23347786 -120438669 + MLT1C LTR MaLR 7 467 0 684 303 25 33 chr12 23348200 23348444 -120438011 - MIR SINE MIR -19 243 2 364 272 11 0 chr12 23350435 23350527 -120435928 + Charlie8 DNA MER1_type 81 173 -2244 392 109 0 0 chr12 23350549 23350604 -120435851 - MLT2B1 LTR ERVL 0 464 410 195 42 0 0 chr12 23350606 23350630 -120435825 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 441 0 0 0 chr12 23350629 23350678 -120435777 + (CA)n Simple_repeat Simple_repeat 1 49 0 1573 129 0 0 chr12 23350683 23350907 -120435548 - MLT2B1 LTR ERVL -291 229 6 2629 147 60 11 chr12 23350910 23351379 -120435076 - ERVL-B1 LTR ERVL -5 5759 5268 540 206 237 0 chr12 23351527 23351658 -120434797 + MIR SINE MIR 45 206 -56 22 35 0 0 chr12 23352503 23352532 -120433923 + AT_rich Low_complexity Low_complexity 1 29 0 303 49 0 0 chr12 23352891 23352932 -120433523 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 378 186 12 35 chr12 23353708 23353794 -120432661 + L2 LINE L2 2986 3069 -203 1942 270 75 65 chr12 23354251 23354327 -120432128 - L2 LINE L2 -2292 1022 948 2113 113 0 0 chr12 23354327 23354602 -120431853 + AluSg SINE Alu 1 275 -35 1942 270 75 65 chr12 23354602 23354866 -120431589 - L2 LINE L2 -2366 948 688 1970 161 0 3 chr12 23354866 23355176 -120431279 + AluJo SINE Alu 4 312 0 1942 270 75 65 chr12 23355176 23355785 -120430670 - L2 LINE L2 -2626 688 63 311 293 121 9 chr12 23356359 23356475 -120429980 + L2 LINE L2 2941 3069 -244 2114 158 42 49 chr12 23356500 23356880 -120429575 + MSTB LTR MaLR 1 379 -47 1611 152 64 72 chr12 23356880 23357255 -120429200 - THE1C LTR MaLR -3 372 1 2114 158 42 49 chr12 23357255 23357303 -120429152 + MSTB LTR MaLR 379 426 0 269 302 88 50 chr12 23357890 23358049 -120428406 + L2 LINE L2 3149 3313 0 242 317 297 0 chr12 23358832 23358933 -120427522 - L2 LINE L2 -4 3268 3138 2831 188 5 6 chr12 23359426 23360071 -120426384 - L1P5 LINE L1 -1097 5049 4406 3383 134 16 3 chr12 23360089 23360807 -120425648 + L1P5 LINE L1 5068 5792 -359 192 77 0 0 chr12 23360807 23360833 -120425622 + (TA)n Simple_repeat Simple_repeat 2 27 0 333 261 11 11 chr12 23360833 23360925 -120425530 - L1MC4 LINE L1 -1339 6703 6612 501 113 71 0 chr12 23360962 23361130 -120425325 + (TA)n Simple_repeat Simple_repeat 1 180 0 547 104 67 0 chr12 23361150 23361314 -120425141 + (TA)n Simple_repeat Simple_repeat 1 175 0 480 103 48 24 chr12 23361334 23361499 -120424956 + (TA)n Simple_repeat Simple_repeat 2 170 0 2369 85 0 0 chr12 23361593 23361923 -120424532 + L1PB1 LINE L1 5784 6113 -38 242 217 0 0 chr12 23362153 23362213 -120424242 + A-rich Low_complexity Low_complexity 1 60 0 1816 223 56 16 chr12 23362334 23362778 -120423677 + LTR40b LTR ERVL 1 462 0 1350 194 46 55 chr12 23363190 23363227 -120423228 + MLT1D LTR MaLR 1 37 -468 1778 202 11 30 chr12 23363227 23363593 -120422862 + MLT1A1 LTR MaLR 5 363 -2 1350 194 46 55 chr12 23363593 23363808 -120422647 + MLT1D LTR MaLR 37 252 -253 447 35 0 0 chr12 23363808 23363865 -120422590 + (GA)n Simple_repeat Simple_repeat 2 58 0 1350 194 46 55 chr12 23363865 23363956 -120422499 + MLT1D LTR MaLR 252 342 -163 1540 150 0 37 chr12 23363956 23364256 -120422199 - L1PA13 LINE L1 -1286 4860 4572 6538 83 3 1 chr12 23364257 23365554 -120420901 + L1PA13 LINE L1 4857 6162 -1 381 141 206 43 chr12 23365554 23365646 -120420809 + MLT1D LTR MaLR 327 433 -72 189 250 206 0 chr12 23365832 23365924 -120420531 - L2 LINE L2 -1880 1434 1324 181 200 44 22 chr12 23366916 23366961 -120419494 - L2 LINE L2 -29 3284 3239 2350 100 0 0 chr12 23367217 23367518 -120418937 - AluSx SINE Alu -11 301 1 191 30 0 61 chr12 23367529 23367562 -120418893 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 1923 59 0 0 chr12 23367566 23367805 -120418650 - L1PA5 LINE L1 -11 6143 5905 217 257 129 0 chr12 23369253 23369323 -120417132 + L2 LINE L2 3230 3308 -5 308 254 85 46 chr12 23369799 23369929 -120416526 + L2 LINE L2 3178 3312 -1 446 296 79 33 chr12 23370905 23371145 -120415310 + MIR SINE MIR 12 262 0 2393 199 20 61 chr12 23371326 23371981 -120414474 - L1ME1 LINE L1 -5 6161 5534 1489 195 27 7 chr12 23372558 23372850 -120413605 - AluJo SINE Alu -14 298 1 586 322 89 0 chr12 23373524 23373738 -120412717 - MIR SINE MIR -8 254 22 2014 168 37 0 chr12 23373949 23374301 -120412154 + MLT1A1 LTR MaLR 1 365 0 381 294 42 8 chr12 23377160 23377279 -120409176 - L2 LINE L2 -1 3271 3149 2396 197 4 17 chr12 23377489 23378006 -120408449 + L1MB7 LINE L1 5540 6049 -135 2270 190 104 59 chr12 23378006 23378753 -120407702 - LTR1B LTR ERV1 0 826 46 574 163 8 39 chr12 23378788 23378917 -120407538 + L1MB7 LINE L1 6052 6176 -8 2333 91 0 3 chr12 23379086 23379383 -120407072 + AluSq SINE Alu 1 296 -17 492 244 360 0 chr12 23379882 23380054 -120406401 + MIR SINE MIR 19 252 -10 204 216 0 0 chr12 23380085 23380136 -120406319 + (TAG)n Simple_repeat Simple_repeat 1 51 0 1854 118 4 0 chr12 23380349 23380595 -120405860 + AluSx SINE Alu 2 248 -64 22 0 0 0 chr12 23380595 23380617 -120405838 + AT_rich Low_complexity Low_complexity 1 22 0 243 175 70 0 chr12 23380880 23380937 -120405518 + LTR58 LTR ERV1 359 419 -260 226 293 64 42 chr12 23381455 23381660 -120404795 - MIR SINE MIR -37 225 46 255 322 34 62 chr12 23381960 23382106 -120404349 - L2 LINE L2 -1 3312 3171 180 0 0 0 chr12 23384506 23384526 -120401929 + (A)n Simple_repeat Simple_repeat 1 20 0 215 420 23 0 chr12 23388448 23388536 -120397919 - L2 LINE L2 -54 3218 3129 190 186 0 34 chr12 23389239 23389298 -120397157 + GA-rich Low_complexity Low_complexity 4 60 0 361 172 0 0 chr12 23389556 23389614 -120396841 - L2 LINE L2 0 3313 3256 607 174 78 30 chr12 23389919 23390086 -120396369 + MER5B DNA MER1_type 2 176 -2 324 102 0 0 chr12 23391481 23391530 -120394925 + (CA)n Simple_repeat Simple_repeat 1 49 0 2042 103 0 0 chr12 23391818 23392080 -120394375 - AluSc SINE Alu -8 301 40 670 242 38 16 chr12 23392195 23392381 -120394074 - MER91B DNA MER1_type 0 190 1 224 119 0 24 chr12 23392501 23392543 -120393912 + (TA)n Simple_repeat Simple_repeat 2 42 0 188 337 23 0 chr12 23392957 23393043 -120393412 + MIR SINE MIR 54 141 -67 247 297 55 0 chr12 23394226 23394317 -120392138 - MLT1H LTR MaLR 0 549 454 342 283 17 8 chr12 23394369 23394489 -120391966 - LTR28 LTR ERV1 0 1020 900 1079 211 201 59 chr12 23394529 23395226 -120391229 - LTR1B LTR ERV1 -37 983 19 254 214 18 0 chr12 23395220 23395276 -120391179 - LTR28 LTR ERV1 -963 57 1 * 992 269 70 30 chr12 23395289 23395620 -120390835 - MLT1H LTR MaLR -198 351 8 458 287 111 55 chr12 23396962 23397366 -120389089 + MLT1H LTR MaLR 123 549 0 195 42 0 0 chr12 23397502 23397526 -120388929 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 26 0 0 0 chr12 23397993 23398019 -120388436 + AT_rich Low_complexity Low_complexity 1 26 0 838 129 50 14 chr12 23398754 23398932 -120387523 - AluJb SINE Alu 0 350 168 22 80 0 0 chr12 23400463 23400513 -120385942 + AT_rich Low_complexity Low_complexity 1 50 0 183 42 0 0 chr12 23402146 23402170 -120384285 + (A)n Simple_repeat Simple_repeat 1 24 0 1335 266 104 34 chr12 23402505 23402834 -120383621 + HAL1 LINE L1 811 1116 -1391 192 77 0 0 chr12 23402834 23402860 -120383595 + (CA)n Simple_repeat Simple_repeat 2 27 0 1335 266 104 34 chr12 23402860 23403373 -120383082 + HAL1 LINE L1 1116 1712 -795 1590 126 19 48 chr12 23403704 23403973 -120382482 + MER1B DNA MER1_type 79 339 0 184 111 44 0 chr12 23404096 23404141 -120382314 + (TA)n Simple_repeat Simple_repeat 2 48 0 380 290 77 73 chr12 23404498 23404757 -120381698 + HAL1 LINE L1 2245 2504 -3 24 0 0 0 chr12 23404765 23404789 -120381666 + AT_rich Low_complexity Low_complexity 1 24 0 322 328 136 11 chr12 23404868 23405045 -120381410 - MIR SINE MIR -1 261 63 211 303 0 30 chr12 23405080 23405146 -120381309 + MIR3 SINE MIR 139 202 -6 222 37 0 0 chr12 23405860 23405887 -120380568 + (TG)n Simple_repeat Simple_repeat 1 27 0 325 314 34 8 chr12 23406332 23406450 -120380005 - MIR SINE MIR -20 242 122 739 234 104 9 chr12 23406664 23406886 -120379569 - MIR SINE MIR 0 262 20 541 251 73 90 chr12 23406893 23407441 -120379014 - MLT1G LTR MaLR -9 558 18 442 259 80 19 chr12 23407788 23407950 -120378505 + MIR SINE MIR 49 220 -42 196 346 125 0 chr12 23407993 23408097 -120378358 + L2 LINE L2 3121 3237 -35 23 54 0 0 chr12 23408237 23408274 -120378181 + AT_rich Low_complexity Low_complexity 1 37 0 623 296 128 32 chr12 23408484 23408889 -120377566 - L2 LINE L2 -19 3294 2851 212 360 112 12 chr12 23411370 23411531 -120374924 - L2 LINE L2 -4 3268 3092 253 327 26 18 chr12 23414527 23414640 -120371815 - MIR SINE MIR -69 139 26 249 264 0 0 chr12 23414993 23415046 -120371409 + GA-rich Low_complexity Low_complexity 2 54 0 240 35 0 0 chr12 23415961 23415990 -120370465 + (TG)n Simple_repeat Simple_repeat 2 30 0 730 294 71 14 chr12 23416287 23416709 -120369746 + L1MEc LINE L1 1435 1880 -4516 293 208 66 28 chr12 23416757 23416863 -120369592 + L1ME3 LINE L1 6033 6142 -20 411 273 76 52 chr12 23416899 23417233 -120369222 + L1MEc LINE L1 2321 2645 -3570 2127 109 7 26 chr12 23417233 23417537 -120368918 + AluSp SINE Alu 1 298 -15 411 273 76 52 chr12 23417537 23417607 -120368848 + L1MEc LINE L1 2645 2712 -3503 2248 138 13 16 chr12 23417607 23417983 -120368472 - THE1C LTR MaLR 0 375 1 411 273 76 52 chr12 23417983 23418076 -120368379 + L1MEc LINE L1 2712 2831 -3384 1375 281 60 88 chr12 23418205 23419059 -120367396 - L2 LINE L2 -1530 1784 955 314 333 20 10 chr12 23419283 23419385 -120367070 + L2 LINE L2 3170 3272 0 218 292 36 27 chr12 23419378 23419513 -120366942 - MIR SINE MIR -68 140 19 * 521 187 32 144 chr12 23419714 23419998 -120366457 + MER112 DNA MER1_type 4 255 -1 432 341 0 0 chr12 23420223 23420349 -120366106 - MIR SINE MIR -62 146 21 2206 74 0 11 chr12 23421830 23422180 -120364275 - AluY SINE Alu 0 347 1 2157 139 0 0 chr12 23422310 23422661 -120363794 - AluSx SINE Alu 0 360 10 1873 173 0 13 chr12 23422663 23422970 -120363485 - AluJb SINE Alu -9 303 1 442 298 60 37 chr12 23423117 23423335 -120363120 + MLT1K LTR MaLR 201 423 -165 236 111 0 22 chr12 23423447 23423492 -120362963 + L1MA8 LINE L1 5785 5828 -506 910 126 14 21 chr12 23423492 23423635 -120362820 + AluSc SINE Alu 165 306 -3 510 182 10 0 chr12 23423635 23423734 -120362721 + L1MA8 LINE L1 5828 5927 -364 992 165 156 31 chr12 23423735 23424088 -120362367 - MSTC LTR MaLR 0 428 1 4046 234 82 90 chr12 23424088 23425634 -120360821 - MSTC-int LTR MaLR 0 1735 203 2147 115 0 20 chr12 23425912 23426216 -120360239 + AluSx SINE Alu 5 302 -10 1049 267 16 0 chr12 23426789 23427100 -120359355 + L1ME LINE L1 5457 5772 -390 1303 328 46 12 chr12 23427100 23427840 -120358615 + L1M3a LINE L1 529 1270 -5033 2272 117 81 5 chr12 23427840 23428233 -120358222 - MSTA LTR MaLR 0 428 6 1848 249 48 22 chr12 23428239 23429145 -120357310 + L1M3a LINE L1 905 1796 -4588 415 183 12 0 chr12 23429333 23429415 -120357040 + Tigger7 DNA MER2_type 235 317 -233 * 835 158 49 6 chr12 23429411 23429575 -120356880 + Tigger7 DNA MER2_type 2398 2568 -19 325 111 0 0 chr12 23429593 23429647 -120356808 + L1ME LINE L1 5757 5810 -360 287 196 0 0 chr12 23429647 23429703 -120356752 + MLT2B3 LTR ERVL 499 554 0 180 258 129 0 chr12 23429735 23429797 -120356658 - MIR SINE MIR -118 144 75 621 204 186 0 chr12 23430464 23430632 -120355823 - MIR SINE MIR -3 259 61 415 326 89 0 chr12 23430659 23430849 -120355606 - MIR SINE MIR -22 240 34 22 35 0 0 chr12 23431201 23431230 -120355225 + AT_rich Low_complexity Low_complexity 1 29 0 1169 274 86 25 chr12 23431352 23431900 -120354555 + L1MC4a LINE L1 5334 5914 -1894 562 51 0 0 chr12 23432079 23432157 -120354298 - L1MA9 LINE L1 0 6312 6235 189 74 0 0 chr12 23432218 23432245 -120354210 + (TTAAA)n Simple_repeat Simple_repeat 2 28 0 2294 142 17 0 chr12 23433102 23433461 -120352994 - MLT1A1 LTR MaLR 0 365 1 537 221 165 25 chr12 23433881 23434039 -120352416 + MER5A DNA MER1_type 10 189 0 460 338 55 14 chr12 23434039 23434256 -120352199 + MIR SINE MIR 17 242 -20 279 0 0 0 chr12 23434484 23434515 -120351940 + (TA)n Simple_repeat Simple_repeat 2 32 0 1078 173 0 0 chr12 23434516 23434695 -120351760 + AluSg/x SINE Alu 132 310 -2 2498 107 18 0 chr12 23435017 23435400 -120351055 + MER83 LTR ERV1 1 390 -58 247 107 89 0 chr12 23435425 23435481 -120350974 - MER83C LTR ERV1 -43 330 270 297 239 15 0 chr12 23435497 23435564 -120350891 + MER83 LTR ERV1 381 448 0 2354 102 3 0 chr12 23436431 23436736 -120349719 + AluSx SINE Alu 1 306 -6 2142 85 3 3 chr12 23436945 23437252 -120349203 - AluSg SINE Alu 0 307 1 568 276 82 24 chr12 23437309 23437761 -120348694 + L1M4 LINE L1 2684 3161 -2985 319 259 83 19 chr12 23437814 23437922 -120348533 + L1M4 LINE L1 3161 3275 -2871 6128 177 74 19 chr12 23438543 23439851 -120346604 + MER52A LTR ERV1 3 1498 -257 475 171 0 0 chr12 23439848 23439930 -120346525 + MER52A LTR ERV1 1674 1755 0 * 203 373 51 0 chr12 23439933 23440051 -120346404 + L2 LINE L2 2410 2533 -781 3444 177 54 30 chr12 23440105 23440906 -120345549 + L1MB4 LINE L1 5353 6172 -8 387 278 4 23 chr12 23440926 23441176 -120345279 + L1MC4a LINE L1 5443 5768 -2040 2192 234 12 30 chr12 23441182 23441456 -120344999 - MER119 DNA MER1_type -4 579 319 1815 5 0 0 chr12 23441456 23441651 -120344804 - AluYa5 SINE Alu -8 303 109 2192 234 12 30 chr12 23441651 23441936 -120344519 - MER119 DNA MER1_type -264 319 30 366 294 106 24 chr12 23441946 23442116 -120344339 + L1MC4a LINE L1 5778 5961 -1847 22 35 0 0 chr12 23442270 23442299 -120344156 + AT_rich Low_complexity Low_complexity 1 29 0 384 358 59 38 chr12 23442382 23442723 -120343732 + L1MC4a LINE L1 6284 6631 -1177 1252 330 41 41 chr12 23442796 23443695 -120342760 - HERV16 LTR ERVL -3736 1260 362 21 0 0 0 chr12 23443783 23443804 -120342651 + AT_rich Low_complexity Low_complexity 1 21 0 1194 256 111 23 chr12 23444007 23444394 -120342061 - LTR16C LTR ERVL 0 491 71 320 316 0 11 chr12 23444831 23444926 -120341529 - L2 LINE L2 0 3272 3179 23 0 0 0 chr12 23445628 23445651 -120340804 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 23445702 23445735 -120340720 + AT_rich Low_complexity Low_complexity 1 33 0 1390 81 0 0 chr12 23446790 23446975 -120339480 - AluYa5 SINE Alu 0 311 127 938 180 20 0 chr12 23447144 23447294 -120339161 + FRAM SINE Alu 1 153 -13 1298 260 125 8 chr12 23447463 23447943 -120338512 - Charlie7 DNA MER1_type -1927 685 150 710 237 104 14 chr12 23447948 23448311 -120338144 - HsTC2 DNA Tc2 -3 1895 1288 1815 170 23 23 chr12 23448992 23449334 -120337121 + MER2 DNA MER2_type 2 343 -1 498 33 0 0 chr12 23449336 23449396 -120337059 - AluSp/q SINE Alu -18 295 236 843 58 0 0 chr12 23449893 23449996 -120336459 - AluY SINE Alu -208 103 1 32 121 0 0 chr12 23450651 23450858 -120335597 + AT_rich Low_complexity Low_complexity 1 207 0 4512 118 210 5 chr12 23450873 23451760 -120334695 - L1PBa LINE L1 -5183 1680 612 813 168 70 0 chr12 23451738 23451923 -120334532 - L1PBa LINE L1 -6663 200 3 * 432 0 0 0 chr12 23452201 23452249 -120334206 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 328 68 4 chr12 23452655 23452890 -120333565 + MIR SINE MIR 1 250 -12 503 183 11 103 chr12 23452999 23453174 -120333281 - MLT2C1 LTR ERVL -41 356 198 2347 103 0 3 chr12 23453177 23453488 -120332967 - AluSx SINE Alu -2 310 1 7857 121 38 46 chr12 23453614 23455008 -120331447 - THE1-int LTR MaLR -197 1383 1 436 296 62 22 chr12 23455901 23456026 -120330429 - MIR SINE MIR -6 256 120 2307 123 0 0 chr12 23456026 23456335 -120330120 + AluSx SINE Alu 1 309 -3 436 296 62 22 chr12 23456335 23456388 -120330067 - MIR SINE MIR -142 120 71 1429 174 127 62 chr12 23456590 23456975 -120329480 - MLT2D LTR ERVL 0 414 5 211 217 0 0 chr12 23457175 23457221 -120329234 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 295 154 0 0 chr12 23457355 23457407 -120329048 - MLT1E3 LTR MaLR 0 624 573 507 216 99 12 chr12 23457517 23457679 -120328776 + L1M4 LINE L1 2522 2697 -3449 3942 223 47 8 chr12 23457681 23458642 -120327813 - ERVL-D LTR ERVL -257 5507 4510 6489 33 5 0 chr12 23458647 23460001 -120326454 + L1PA4 LINE L1 4717 6074 -81 696 317 21 12 chr12 23460482 23460725 -120325730 - L2 LINE L2 -256 3057 2813 271 211 0 0 chr12 23460751 23460803 -120325652 - MLT1F LTR MaLR 0 549 498 2020 133 18 0 chr12 23460826 23461157 -120325298 - L1PA16 LINE L1 -22 6144 5808 1538 262 70 13 chr12 23461178 23461632 -120324823 - MLT1F LTR MaLR -59 483 4 463 298 9 0 chr12 23461635 23461749 -120324706 - L2 LINE L2 -519 2795 2681 25 0 0 0 chr12 23462081 23462106 -120324349 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 23462113 23462134 -120324321 + AT_rich Low_complexity Low_complexity 1 21 0 546 114 17 34 chr12 23462134 23462310 -120324145 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 * 572 54 84 12 chr12 23462271 23462438 -120324017 + (TA)n Simple_repeat Simple_repeat 2 180 0 1992 148 0 3 chr12 23462438 23462735 -120323720 + AluJb SINE Alu 1 296 -16 5638 266 144 21 chr12 23463012 23465174 -120321281 - L2 LINE L2 -653 2661 233 23 0 0 0 chr12 23468135 23468158 -120318297 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 23469122 23469157 -120317298 + AT_rich Low_complexity Low_complexity 1 35 0 702 228 16 65 chr12 23469224 23469275 -120317180 - MER5A DNA MER1_type -14 175 123 1845 129 46 0 chr12 23469275 23469555 -120316900 + AluJo SINE Alu 1 293 -19 702 228 16 65 chr12 23469555 23469687 -120316768 - MER5A DNA MER1_type -66 123 1 1412 267 106 61 chr12 23469694 23469899 -120316556 + L2 LINE L2 2048 2242 -1071 1622 129 146 7 chr12 23469899 23470193 -120316262 - MER44D DNA MER2_type -4 605 1 1412 267 106 61 chr12 23470193 23471174 -120315281 + L2 LINE L2 2242 3313 0 23 68 0 0 chr12 23473694 23473738 -120312717 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 23474931 23474952 -120311503 + AT_rich Low_complexity Low_complexity 1 21 0 991 85 17 26 chr12 23475188 23475424 -120311031 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 1234 250 85 26 chr12 23475563 23475860 -120310595 - MLT1E LTR MaLR -182 411 84 4979 156 99 39 chr12 23475860 23476822 -120309633 + LTR28 LTR ERV1 1 1020 0 1234 250 85 26 chr12 23476822 23476912 -120309543 - MLT1E LTR MaLR -509 84 1 216 271 12 24 chr12 23477917 23478002 -120308453 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 194 328 0 0 chr12 23478057 23478115 -120308340 - MIR SINE MIR -100 108 51 23 33 0 0 chr12 23478963 23478993 -120307462 + AT_rich Low_complexity Low_complexity 1 30 0 5298 93 26 7 chr12 23479064 23479870 -120306585 - L1PA8 LINE L1 0 6172 5352 530 254 73 30 chr12 23480027 23480259 -120306196 - MER112 DNA MER1_type -6 254 13 2054 136 0 10 chr12 23480264 23480566 -120305889 + AluSx SINE Alu 1 299 -13 446 120 0 0 chr12 23480940 23481015 -120305440 + L1PBa LINE L1 3 77 -6786 250 272 54 11 chr12 23481389 23481481 -120304974 - MIR3 SINE MIR -5 203 108 527 218 17 6 chr12 23483302 23483476 -120302979 + GA-rich Low_complexity Low_complexity 1 176 0 * 774 128 0 45 chr12 23483450 23483629 -120302826 + (GGAA)n Simple_repeat Simple_repeat 2 172 0 368 234 66 32 chr12 23484075 23484242 -120302213 + LTR28 LTR ERV1 1 139 -286 * 428 216 216 28 chr12 23484209 23484390 -120302065 + LTR1 LTR ERV1 110 231 -554 1410 209 96 44 chr12 23484405 23484991 -120301464 + LTR28 LTR ERV1 357 1020 0 188 320 0 0 chr12 23485414 23485464 -120300991 - MIR3 SINE MIR -27 181 132 724 254 56 5 chr12 23485812 23486025 -120300430 - MER58A DNA MER1_type 0 224 1 887 184 65 30 chr12 23486135 23486336 -120300119 + MER3 DNA MER1_type 1 208 -1 305 366 101 18 chr12 23486806 23487167 -120299288 - L2 LINE L2 -217 3055 2659 727 254 19 93 chr12 23487302 23487668 -120298787 + MER102b DNA MER1_type 1 339 -2 549 278 0 0 chr12 23489268 23489580 -120296875 + FLAM_A SINE Alu 1 312 0 310 120 30 70 chr12 23489565 23489665 -120296790 + GA-rich Low_complexity Low_complexity 4 99 0 1999 141 59 5 chr12 23490623 23491013 -120295442 - L1MB4 LINE L1 -35 6145 5735 2308 146 13 15 chr12 23491186 23491577 -120294878 + MLT1B LTR MaLR 1 390 0 689 293 26 89 chr12 23491713 23492139 -120294316 - L2 LINE L2 -72 3241 2843 418 205 0 0 chr12 23492139 23492222 -120294233 + AluJ/FLAM SINE Alu 1 83 -229 862 147 0 51 chr12 23492222 23492379 -120294076 + AluJo/FRAM SINE Alu 162 310 -2 580 122 0 19 chr12 23492381 23492488 -120293967 + (GGA)n Simple_repeat Simple_repeat 3 107 0 2137 260 62 39 chr12 23492488 23492774 -120293681 - L2 LINE L2 -410 2904 2626 2129 132 0 0 chr12 23492774 23493069 -120293386 + AluSx SINE Alu 1 295 -17 2137 260 62 39 chr12 23493069 23493558 -120292897 - L2 LINE L2 -688 2626 2111 1002 318 42 58 chr12 23494014 23494659 -120291796 - L2 LINE L2 -212 3060 2433 242 276 113 63 chr12 23494651 23494890 -120291565 - MIR3 SINE MIR -5 257 2 * 21 0 0 0 chr12 23495159 23495180 -120291275 + AT_rich Low_complexity Low_complexity 1 21 0 339 345 28 49 chr12 23495469 23495611 -120290844 + L2 LINE L2 3134 3272 0 747 215 129 39 chr12 23495873 23496129 -120290326 + L2 LINE L2 3035 3313 0 313 299 7 66 chr12 23496165 23496302 -120290153 - MIR SINE MIR -112 150 22 291 260 45 104 chr12 23496689 23496843 -120289612 + MER5A DNA MER1_type 33 188 -1 238 336 25 25 chr12 23497310 23497432 -120289023 + MIR SINE MIR 140 261 -1 22 56 0 0 chr12 23497521 23497557 -120288898 + AT_rich Low_complexity Low_complexity 1 36 0 2069 118 6 13 chr12 23497606 23497919 -120288536 - AluSx SINE Alu -1 311 1 432 288 46 13 chr12 23498948 23499101 -120287354 - LTR67 LTR ERVL 0 557 400 2072 134 0 0 chr12 23499684 23500034 -120286421 + AluSx SINE Alu 1 350 0 3891 152 107 5 chr12 23500879 23501629 -120284826 + LTR1B LTR ERV1 1 826 0 394 288 57 57 chr12 23502050 23502227 -120284228 + MER5B DNA MER1_type 1 177 -1 192 342 88 18 chr12 23503286 23503400 -120283055 - L2 LINE L2 -18 3254 3133 208 402 122 5 chr12 23503807 23504021 -120282434 + MIR SINE MIR 20 258 -4 297 109 0 0 chr12 23504775 23504821 -120281634 + (TC)n Simple_repeat Simple_repeat 2 47 0 343 264 23 0 chr12 23504833 23504920 -120281535 - L1MC4 LINE L1 -1339 6703 6615 319 322 0 0 chr12 23504861 23504951 -120281504 + L1MC4 LINE L1 6614 6703 -1339 * 255 125 0 0 chr12 23505422 23505462 -120280993 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 23505543 23505567 -120280888 + AT_rich Low_complexity Low_complexity 1 24 0 207 161 0 0 chr12 23506116 23506172 -120280283 + A-rich Low_complexity Low_complexity 1 56 0 581 290 30 6 chr12 23506730 23506899 -120279556 + L3 LINE CR1 308 480 -1097 326 224 82 45 chr12 23506973 23507107 -120279348 + MER103 DNA DNA 12 150 -16 1261 343 126 33 chr12 23507192 23508123 -120278332 + L3 LINE CR1 491 1333 -244 1255 253 70 42 chr12 23508123 23508398 -120278057 + LTR47B LTR ERVL 1 267 -176 2324 85 7 0 chr12 23508398 23508704 -120277751 + AluY SINE Alu 1 308 -3 276 30 0 0 chr12 23508704 23508737 -120277718 + (TA)n Simple_repeat Simple_repeat 1 33 0 1255 253 70 42 chr12 23508737 23508891 -120277564 + LTR47B LTR ERVL 266 443 0 1261 343 126 33 chr12 23508891 23508941 -120277514 + L3 LINE CR1 1333 1564 -13 427 235 49 37 chr12 23509659 23509821 -120276634 - MIR SINE MIR 0 262 99 610 247 29 50 chr12 23509905 23510175 -120276280 + L1ME LINE L1 5476 5732 -389 1811 174 0 7 chr12 23510530 23510840 -120275615 - AluSx SINE Alu -2 310 3 314 341 79 47 chr12 23510955 23511504 -120274951 - L2 LINE L2 -40 3232 2658 269 322 11 0 chr12 23512194 23512281 -120274174 + MIR3 SINE MIR 111 198 -10 1725 199 67 12 chr12 23512294 23512710 -120273745 - MER41B LTR ERV1 0 635 197 2118 251 36 9 chr12 23513060 23513610 -120272845 + MLT1F1 LTR MaLR 3 567 0 203 260 40 13 chr12 23514610 23514760 -120271695 + (TA)n Simple_repeat Simple_repeat 1 154 0 316 296 0 0 chr12 23514937 23515025 -120271430 - L3 LINE CR1 -156 1421 1334 188 178 260 27 chr12 23515044 23515117 -120271338 - L2 LINE L2 -47 3225 3136 991 298 100 7 chr12 23515565 23515995 -120270460 + LTR33 LTR ERVL 51 520 -1 314 283 89 45 chr12 23516460 23516966 -120269489 - L1 LINE L1 -1557 4589 4062 762 258 36 32 chr12 23517520 23517710 -120268745 + MER58A DNA MER1_type 1 194 -2226 1915 162 11 40 chr12 23517710 23518086 -120268369 + MLT1A1 LTR MaLR 1 365 0 762 258 36 32 chr12 23518086 23518116 -120268339 + MER58A DNA MER1_type 194 222 -2 263 239 34 11 chr12 23518189 23518277 -120268178 + MER103 DNA DNA 1 90 -76 30 27 0 0 chr12 23518355 23518392 -120268063 + AT_rich Low_complexity Low_complexity 1 37 0 313 191 0 0 chr12 23519066 23519129 -120267326 - AluSp/q SINE Alu -8 295 233 2429 219 25 7 chr12 23522082 23522635 -120263820 + MER90 LTR ERV1 1 604 -10 717 193 0 0 chr12 23523429 23523548 -120262907 + FLAM_C SINE Alu 1 119 -14 584 241 57 30 chr12 23524059 23524324 -120262131 + LTR37B LTR ERV1 197 468 0 1777 194 0 0 chr12 23524330 23524629 -120261826 - AluJb SINE Alu -13 299 1 312 275 0 62 chr12 23525338 23525498 -120260957 + MER31-int LTR ERV1 1147 1296 -3640 2495 164 45 4 chr12 23526549 23527493 -120258962 + L1P5 LINE L1 4762 5726 -430 1319 157 10 0 chr12 23527610 23527814 -120258641 + AluSx SINE Alu 12 217 -95 403 211 105 0 chr12 23527872 23527967 -120258488 + AluSg/x SINE Alu 187 291 -21 353 314 217 16 chr12 23528125 23528253 -120258202 - L1MEd LINE L1 -3561 2568 2467 225 0 0 0 chr12 23528253 23528278 -120258177 + (TG)n Simple_repeat Simple_repeat 2 26 0 353 314 217 16 chr12 23528278 23528407 -120258048 - L1MEd LINE L1 -3662 2467 2259 23 33 0 0 chr12 23528426 23528456 -120257999 + AT_rich Low_complexity Low_complexity 1 30 0 876 215 45 47 chr12 23528711 23528996 -120257459 - MLT1B LTR MaLR 0 390 161 2379 99 0 0 chr12 23528996 23529300 -120257155 - AluSx SINE Alu -8 304 1 876 215 45 47 chr12 23529300 23529458 -120256997 - MLT1B LTR MaLR -229 161 4 498 332 130 0 chr12 23529803 23530011 -120256444 + MIR SINE MIR 26 260 -2 432 271 78 0 chr12 23530030 23530196 -120256259 - HAL1 LINE L1 -927 1580 1402 2211 155 9 60 chr12 23530269 23530655 -120255800 + MSTC LTR MaLR 1 362 -66 3344 104 0 4 chr12 23530655 23531135 -120255320 - L1PA14 LINE L1 -4 6157 5680 2211 155 9 60 chr12 23531135 23531199 -120255256 + MSTC LTR MaLR 362 428 0 543 317 79 52 chr12 23531199 23531619 -120254836 - L1MEd LINE L1 -4902 1217 787 2151 82 7 53 chr12 23531731 23532034 -120254421 + AluSp SINE Alu 1 289 -24 474 133 0 0 chr12 23532034 23532109 -120254346 + AluSp/q SINE Alu 227 301 -12 297 0 0 0 chr12 23532607 23532640 -120253815 + (CA)n Simple_repeat Simple_repeat 1 33 0 1636 59 0 15 chr12 23532648 23532851 -120253604 - AluSc SINE Alu -16 293 94 1728 140 80 3 chr12 23532856 23533142 -120253313 - AluSx SINE Alu -4 308 1 2355 237 36 6 chr12 23533825 23534373 -120252082 - MLT1F1 LTR MaLR 0 567 3 430 130 13 0 chr12 23534619 23534696 -120251759 + LTR37B LTR ERV1 9 86 -382 1384 183 8 0 chr12 23534700 23534941 -120251514 + Charlie3 DNA MER1_type 3 245 -2465 326 196 0 0 chr12 23534982 23535038 -120251417 + Charlie3 DNA MER1_type 2640 2695 -15 2114 179 0 33 chr12 23535151 23535581 -120250874 + L1PA16 LINE L1 5750 6165 -1 417 222 20 20 chr12 23535854 23536007 -120250448 + L1MDa LINE L1 1396 1548 -4992 737 232 43 5 chr12 23536202 23536409 -120250046 + LTR37B LTR ERV1 1 215 -253 22 70 0 0 chr12 23536445 23536488 -120249967 + AT_rich Low_complexity Low_complexity 1 43 0 205 306 188 12 chr12 23537889 23537974 -120248481 + L2 LINE L2 3146 3245 -27 340 214 0 0 chr12 23538227 23538283 -120248172 - MER5A DNA MER1_type -130 59 4 189 0 0 0 chr12 23538496 23538517 -120247938 + (A)n Simple_repeat Simple_repeat 1 21 0 2180 128 0 0 chr12 23539589 23539901 -120246554 + AluSx SINE Alu 1 312 0 872 165 6 6 chr12 23540217 23540375 -120246080 + MER93b LTR ERV1 5 162 -211 1207 172 92 164 chr12 23540814 23541160 -120245295 - L1MC4a LINE L1 -600 7208 6838 2868 164 59 24 chr12 23541160 23541239 -120245216 + LTR9 LTR ERV1 1 76 -536 2083 132 3 10 chr12 23541239 23541542 -120244913 + AluSx SINE Alu 11 311 -1 2868 164 59 24 chr12 23541542 23542053 -120244402 + LTR9 LTR ERV1 76 612 0 1207 172 92 164 chr12 23542053 23542322 -120244133 - L1MC4a LINE L1 -970 6838 6724 2123 125 0 0 chr12 23542322 23542619 -120243836 - AluSc SINE Alu -12 297 1 1207 172 92 164 chr12 23542619 23542691 -120243764 - L1MC4a LINE L1 -1084 6724 6648 428 261 126 0 chr12 23542722 23542921 -120243534 - L1MC4 LINE L1 -2 8040 7817 460 246 103 27 chr12 23542924 23543148 -120243307 - L1MDa LINE L1 -4712 1828 1588 535 294 75 7 chr12 23543191 23543602 -120242853 - L1M4 LINE L1 -3594 2552 2114 22 35 0 0 chr12 23543971 23544000 -120242455 + AT_rich Low_complexity Low_complexity 1 29 0 284 322 11 0 chr12 23545529 23545616 -120240839 + MIR3 SINE MIR 111 198 -10 3495 156 43 2 chr12 23545629 23546239 -120240216 - MER41B LTR ERV1 0 635 1 682 190 17 29 chr12 23546533 23546707 -120239748 + MLT1A2 LTR MaLR 5 176 -198 846 208 27 65 chr12 23546841 23547101 -120239354 + MLT1A2 LTR MaLR 117 366 -8 4217 42 12 32 chr12 23548011 23548580 -120237875 - LTR6B LTR ERV1 0 558 1 362 339 71 47 chr12 23548885 23549139 -120237316 - L1ME3 LINE L1 -258 5904 5645 561 186 0 0 chr12 23549199 23549296 -120237159 + Tigger3(Golem) DNA MER2_type 6 102 -2927 3789 136 61 3 chr12 23549299 23549999 -120236456 + Tigger3(Golem) DNA MER2_type 2287 3027 -2 435 264 92 22 chr12 23550001 23550228 -120236227 + ERVL LTR ERVL 155 397 -4599 * 1287 306 60 24 chr12 23550226 23550762 -120235693 + ERVL LTR ERVL 969 1523 -3473 1498 353 71 25 chr12 23551012 23552555 -120233900 + ERVL LTR ERVL 2656 4269 -1216 25 0 0 0 chr12 23553141 23553166 -120233289 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 23553453 23553475 -120232980 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 255 269 114 30 chr12 23554101 23554365 -120232090 - L1ME LINE L1 -299 5822 5537 2251 124 0 6 chr12 23554455 23554769 -120231686 - AluSx SINE Alu 0 312 1 518 343 77 33 chr12 23554882 23555607 -120230848 - L2 LINE L2 -40 3232 2472 926 70 0 0 chr12 23555926 23556040 -120230415 - AluSc SINE Alu -185 124 11 1260 112 0 0 chr12 23556040 23556210 -120230245 + AluSc SINE Alu 140 309 0 956 252 42 44 chr12 23556927 23557383 -120229072 - L1MC5 LINE L1 -106 7855 7401 391 319 190 0 chr12 23557777 23557940 -120228515 + MER91A DNA MER1_type 2 195 -1 243 320 75 65 chr12 23557980 23558600 -120227855 + L2 LINE L2 1856 2530 -784 410 266 115 14 chr12 23558613 23558752 -120227703 - L2 LINE L2 -40 3273 3121 182 335 74 56 chr12 23558812 23559096 -120227359 + L2 LINE L2 2625 2913 -401 591 285 65 14 chr12 23559418 23559632 -120226823 + MIR SINE MIR 23 247 -15 2159 122 23 0 chr12 23559859 23560162 -120226293 - AluSq SINE Alu -1 312 3 2770 0 0 3 chr12 23560206 23560506 -120225949 - AluYa5 SINE Alu -12 299 1 208 310 49 98 chr12 23562215 23562418 -120224037 + L2 LINE L2 2689 2881 -433 1523 183 84 113 chr12 23562444 23562899 -120223556 + MLT1E1 LTR MaLR 168 608 -46 756 175 0 0 chr12 23562899 23563019 -120223436 - FLAM_A SINE Alu -12 121 2 1523 183 84 113 chr12 23563019 23563065 -120223390 + MLT1E1 LTR MaLR 608 654 0 286 254 8 8 chr12 23563065 23563187 -120223268 + GA-rich Low_complexity Low_complexity 2 123 0 569 298 112 16 chr12 23563502 23564088 -120222367 - L1ME LINE L1 -817 5329 4645 429 291 30 19 chr12 23564259 23564527 -120221928 - L1ME LINE L1 -1499 4647 4377 1762 188 0 0 chr12 23564551 23564838 -120221617 - AluSx SINE Alu -25 287 1 619 131 0 0 chr12 23564897 23564996 -120221459 + L1PA13 LINE L1 6054 6152 -11 21 36 0 0 chr12 23564996 23565024 -120221431 + AT_rich Low_complexity Low_complexity 1 28 0 361 309 8 68 chr12 23565101 23565192 -120221263 - L1ME LINE L1 -1891 4255 4160 2297 103 3 0 chr12 23565192 23565493 -120220962 - AluSx SINE Alu -10 302 1 361 309 8 68 chr12 23565493 23565653 -120220802 - L1ME LINE L1 -1986 4160 4019 2359 67 0 0 chr12 23565927 23566247 -120220208 - AluY SINE Alu 0 320 1 189 94 0 0 chr12 23566410 23566442 -120220013 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 204 0 23 chr12 23567298 23567342 -120219113 + T-rich Low_complexity Low_complexity 2 44 0 193 321 0 0 chr12 23569573 23569626 -120216829 + MER5A DNA MER1_type 62 114 -75 246 277 160 0 chr12 23570731 23570850 -120215605 + L3 LINE CR1 1186 1323 -254 241 353 209 23 chr12 23571077 23571558 -120214897 + L2 LINE L2 2656 3225 -47 294 307 0 0 chr12 23571577 23571665 -120214790 + L3 LINE CR1 1334 1421 -156 208 240 60 7 chr12 23571842 23571992 -120214463 + (TA)n Simple_repeat Simple_repeat 1 158 0 240 263 53 26 chr12 23572594 23572708 -120213747 - MLT1J LTR MaLR -44 467 351 703 201 35 30 chr12 23572722 23572891 -120213564 - MER5A DNA MER1_type -18 171 2 251 323 50 0 chr12 23572952 23573051 -120213404 - MLT1J1 LTR MaLR -284 162 59 722 216 77 0 chr12 23573081 23573289 -120213166 - L1ME1 LINE L1 -1600 4546 4323 679 209 96 23 chr12 23573300 23573477 -120212978 + L1ME1 LINE L1 4561 4750 -1396 1271 172 9 51 chr12 23573600 23573918 -120212537 + MLT1A2 LTR MaLR 4 374 0 2479 205 57 24 chr12 23573919 23575158 -120211297 + L1ME1 LINE L1 4771 6044 -122 288 329 95 7 chr12 23575419 23575556 -120210899 + L2 LINE L2 3165 3313 0 1925 138 30 0 chr12 23576683 23576981 -120209474 + AluJb SINE Alu 1 307 -5 1893 210 69 21 chr12 23577280 23577761 -120208694 - L1ME1 LINE L1 0 6166 5663 1501 236 83 23 chr12 23577760 23578303 -120208152 - L1M3 LINE L1 -617 5566 4853 * 285 138 0 69 chr12 23578353 23578411 -120208044 + MLT1B LTR MaLR 1 54 -336 2441 246 103 29 chr12 23578424 23579573 -120206882 - L1ME1 LINE L1 -803 5343 4041 1921 165 23 33 chr12 23579573 23579966 -120206489 + MLT1B LTR MaLR 2 390 0 2441 246 103 29 chr12 23579966 23580179 -120206276 - L1ME1 LINE L1 -2105 4041 3845 21 71 0 0 chr12 23581300 23581342 -120205113 + AT_rich Low_complexity Low_complexity 1 42 0 618 81 0 0 chr12 23581342 23581429 -120205026 - L1MA1 LINE L1 -4 6298 6212 542 230 68 79 chr12 23581664 23581846 -120204609 + MIR SINE MIR 1 184 -78 2057 150 0 10 chr12 23581846 23582160 -120204295 + AluJb SINE Alu 2 312 0 1846 122 4 0 chr12 23582162 23582424 -120204031 + AluSp SINE Alu 43 305 -8 542 230 68 79 chr12 23582424 23582503 -120203952 + MIR SINE MIR 185 262 0 349 280 9 0 chr12 23582519 23582626 -120203829 + (TA)n Simple_repeat Simple_repeat 2 109 0 195 186 0 0 chr12 23582626 23582669 -120203786 + GA-rich Low_complexity Low_complexity 2 44 0 256 329 105 20 chr12 23582735 23582887 -120203568 + MIR SINE MIR 98 262 0 1932 142 4 0 chr12 23582975 23583256 -120203199 + AluJo SINE Alu 1 282 -30 212 0 36 0 chr12 23583259 23583287 -120203168 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 288 284 21 67 chr12 23583505 23583790 -120202665 + L1MC4a LINE L1 4881 5152 -994 188 33 0 33 chr12 23583793 23583823 -120202632 + (TA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 23584006 23584034 -120202421 + AT_rich Low_complexity Low_complexity 1 28 0 451 246 17 29 chr12 23584034 23584209 -120202246 + L1MC4a LINE L1 5255 5427 -2381 1095 276 16 50 chr12 23584242 23584746 -120201709 + L1MC4a LINE L1 5548 6034 -1774 4120 206 47 30 chr12 23584962 23586110 -120200345 - L1M3 LINE L1 -1430 4716 3550 1770 234 17 17 chr12 23586101 23586627 -120199828 - L1M4 LINE L1 -1036 5110 4479 * 381 235 4 42 chr12 23586647 23586747 -120199708 - AluJo SINE Alu -103 199 120 661 201 52 0 chr12 23586753 23586927 -120199528 - L1M4 LINE L1 -1675 4471 4289 1088 242 17 20 chr12 23586927 23587220 -120199235 + MLT1D LTR MaLR 214 505 0 668 306 71 66 chr12 23587220 23587573 -120198882 - L1M4 LINE L1 -1077 5069 4710 1153 191 137 73 chr12 23587573 23587945 -120198510 + MSTD LTR MaLR 1 396 0 668 306 71 66 chr12 23587945 23588182 -120198273 - L1M4 LINE L1 -1436 4710 4476 2790 219 14 12 chr12 23589626 23590316 -120196139 - L1 LINE L1 -1134 5012 4321 297 351 0 15 chr12 23591175 23591309 -120195146 + L3b LINE CR1 1240 1371 -212 1580 178 71 63 chr12 23591456 23591918 -120194537 + LTR37B LTR ERV1 3 468 0 243 0 0 0 chr12 23591955 23591982 -120194473 + (TG)n Simple_repeat Simple_repeat 1 27 0 306 52 35 17 chr12 23592368 23592426 -120194029 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 256 293 27 0 chr12 23592745 23592820 -120193635 + MIR3 SINE MIR 109 185 -23 290 268 0 0 chr12 23592916 23592987 -120193468 + GA-rich Low_complexity Low_complexity 4 74 0 3765 117 16 25 chr12 23594005 23594576 -120191879 - MER61E LTR ERV1 -3 566 1 231 182 0 18 chr12 23594627 23594682 -120191773 - L1MD3 LINE L1 -10 7985 7932 1197 130 72 24 chr12 23594717 23594924 -120191531 + MER20 DNA MER1_type 1 217 -2 284 232 0 0 chr12 23594956 23595025 -120191430 + MER116 DNA Mariner 1 69 -11 519 233 80 40 chr12 23595026 23595275 -120191180 - L1MC4 LINE L1 -93 7949 7691 21 57 0 0 chr12 23596179 23596214 -120190241 + AT_rich Low_complexity Low_complexity 1 35 0 1941 214 5 10 chr12 23596298 23596713 -120189742 + L1MC4a LINE L1 4870 5282 -864 6473 42 1 1 chr12 23596720 23597953 -120188502 + L1PA5 LINE L1 4599 5831 -323 206 147 29 0 chr12 23599837 23599871 -120186584 - MIR SINE MIR -8 254 220 22 0 0 0 chr12 23599985 23600007 -120186448 + AT_rich Low_complexity Low_complexity 1 22 0 209 242 30 15 chr12 23600064 23600130 -120186325 + GA-rich Low_complexity Low_complexity 2 68 0 208 330 17 85 chr12 23600371 23600489 -120185966 + MIR SINE MIR 28 137 -125 380 179 38 38 chr12 23600649 23600755 -120185700 + L1MC4a LINE L1 5322 5427 -2381 1164 278 13 53 chr12 23600788 23601334 -120185121 + L1MC4a LINE L1 5548 6071 -1737 23 33 0 0 chr12 23602786 23602816 -120183639 + AT_rich Low_complexity Low_complexity 1 30 0 301 210 25 0 chr12 23603275 23603356 -120183099 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1020 209 24 0 chr12 23604150 23604361 -120182094 - MER20 DNA MER1_type -3 216 1 838 227 25 128 chr12 23605702 23606100 -120180355 - LTR37B LTR ERV1 -1 467 132 1019 191 67 0 chr12 23606100 23606309 -120180146 + MER58A DNA MER1_type 1 223 -1 838 227 25 128 chr12 23606309 23606425 -120180030 - LTR37B LTR ERV1 -336 132 6 21 0 0 0 chr12 23606820 23606841 -120179614 + AT_rich Low_complexity Low_complexity 1 21 0 460 294 172 5 chr12 23608693 23608897 -120177558 + L2 LINE L2 1848 2085 -1229 518 99 0 0 chr12 23608937 23609008 -120177447 + AluS SINE Alu 1 71 -242 449 261 16 0 chr12 23609047 23609204 -120177251 + HERVL LTR ERVL 5124 5285 -203 611 290 157 52 chr12 23609234 23609655 -120176800 + MLT1H LTR MaLR 69 533 -16 320 351 47 7 chr12 23610095 23610243 -120176212 + LTR67 LTR ERVL 2 155 -402 4575 214 80 3 chr12 23610246 23611288 -120175167 + HERVL LTR ERVL 3384 4505 -1259 47 0 0 17 chr12 23611336 23611367 -120175088 + AT_rich Low_complexity Low_complexity 1 32 -25 1171 15 0 0 chr12 23611367 23611500 -120174955 - L1PA3 LINE L1 -3 6152 6020 47 0 0 17 chr12 23611500 23611526 -120174929 + AT_rich Low_complexity Low_complexity 32 57 0 922 272 95 55 chr12 23611595 23612344 -120174111 - LTR1B LTR ERV1 -15 811 33 1807 159 35 0 chr12 23613126 23613415 -120173040 - AluJb SINE Alu -13 299 1 286 241 0 0 chr12 23615187 23615245 -120171210 + MLT1C LTR MaLR 213 270 -197 1668 128 100 37 chr12 23615253 23615456 -120170999 + THE1C LTR MaLR 1 237 -138 2363 179 199 50 chr12 23615456 23616175 -120170280 - LTR1B LTR ERV1 0 826 1 1668 128 100 37 chr12 23616175 23616322 -120170133 + THE1C LTR MaLR 237 373 -2 581 261 7 13 chr12 23616331 23616484 -120169971 + MLT1C LTR MaLR 316 467 0 956 243 15 0 chr12 23617171 23617377 -120169078 - MIR SINE MIR -9 253 45 706 119 200 19 chr12 23617377 23617537 -120168918 - MER53 DNA DNA 0 189 1 21 0 0 0 chr12 23617588 23617609 -120168846 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr12 23618522 23618554 -120167901 + (CA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr12 23619644 23619665 -120166790 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 231 105 26 0 chr12 23619869 23619907 -120166548 + Alu SINE Alu 2 40 -262 1704 141 24 31 chr12 23619907 23620197 -120166258 + AluJo SINE Alu 11 298 -14 190 416 8 0 chr12 23621066 23621191 -120165264 + MIR3 SINE MIR 76 201 -7 183 184 0 0 chr12 23621202 23621240 -120165215 + (TA)n Simple_repeat Simple_repeat 1 38 0 241 329 24 0 chr12 23622093 23622175 -120164280 + MIR3 SINE MIR 118 201 -7 350 347 27 14 chr12 23623247 23623394 -120163061 + MIR SINE MIR 106 254 -8 212 250 32 16 chr12 23624137 23624261 -120162194 + (TA)n Simple_repeat Simple_repeat 1 126 0 270 0 0 0 chr12 23624274 23624304 -120162151 + (TA)n Simple_repeat Simple_repeat 2 31 0 1198 157 0 0 chr12 23624872 23625069 -120161386 - MER2 DNA MER2_type -148 197 1 345 225 27 18 chr12 23625079 23625190 -120161265 + L1MA9 LINE L1 6201 6312 0 733 259 39 15 chr12 23626279 23626484 -120159971 + MER63A DNA MER1_type 1 210 0 657 292 37 75 chr12 23626883 23627284 -120159171 + MER20B DNA MER1_type 3 388 -395 340 263 0 0 chr12 23627465 23627560 -120158895 + MER20B DNA MER1_type 509 603 -180 475 373 86 21 chr12 23627578 23627916 -120158539 + L2 LINE L2 2435 2794 -520 216 316 68 26 chr12 23628006 23628123 -120158332 + L2 LINE L2 2935 3056 -216 233 309 138 6 chr12 23628519 23628700 -120157755 - MIR SINE MIR 0 262 58 385 283 13 68 chr12 23629097 23629289 -120157166 - MIR SINE MIR -46 216 34 249 108 0 0 chr12 23630137 23630174 -120156281 + (CA)n Simple_repeat Simple_repeat 2 38 0 411 225 132 31 chr12 23630731 23630860 -120155595 + L2 LINE L2 3172 3313 0 22 0 0 0 chr12 23631349 23631371 -120155084 + AT_rich Low_complexity Low_complexity 1 22 0 3579 36 0 0 chr12 23631375 23631825 -120154630 - L1HS LINE L1 0 6155 5706 1054 61 0 79 chr12 23631925 23632090 -120154365 + L1PA5 LINE L1 5998 6149 -5 2180 127 3 0 chr12 23632108 23632407 -120154048 + AluSq SINE Alu 6 305 -8 2714 270 67 65 chr12 23632443 23634672 -120151783 + L1M3b LINE L1 9 2028 -4323 2308 64 47 7 chr12 23634672 23634969 -120151486 + AluY SINE Alu 1 309 -2 2714 270 67 65 chr12 23634969 23635110 -120151345 + L1M3b LINE L1 2028 2167 -4184 876 182 0 16 chr12 23635111 23635303 -120151152 + L1M4 LINE L1 4911 5099 -1047 2142 157 51 37 chr12 23635308 23635736 -120150719 - Tigger2a DNA MER2_type 0 434 1 2839 163 6 11 chr12 23635736 23636247 -120150208 + L1MA6 LINE L1 5777 6300 0 12874 170 46 45 chr12 23636305 23636404 -120150051 + L1MA7 LINE L1 3237 3334 -4376 2261 113 0 10 chr12 23636404 23636715 -120149740 - AluSg SINE Alu -2 308 1 12874 170 46 45 chr12 23636715 23641089 -120145366 + L1MA7 LINE L1 3334 7708 -2 2317 180 28 10 chr12 23641099 23641594 -120144861 + L1M4 LINE L1 5293 5796 -388 207 139 0 0 chr12 23641651 23641687 -120144768 + (TG)n Simple_repeat Simple_repeat 2 37 0 181 346 106 0 chr12 23641886 23641990 -120144465 + L3 LINE CR1 1129 1243 -334 380 294 25 8 chr12 23643936 23644055 -120142400 + MER5C DNA MER1_type 1 121 -203 248 170 0 0 chr12 23644082 23644135 -120142320 + MER5C DNA MER1_type 208 260 -64 2027 102 0 4 chr12 23644136 23644401 -120142054 + AluSx SINE Alu 3 266 -46 1553 158 20 41 chr12 23644675 23645016 -120141439 + THE1C LTR MaLR 1 334 -41 1107 135 0 0 chr12 23646641 23646833 -120139622 + L1MA4 LINE L1 6103 6294 -6 636 235 114 71 chr12 23647746 23648070 -120138385 - MER102b DNA MER1_type -3 338 1 306 245 43 11 chr12 23648693 23648787 -120137668 - MLT1K LTR MaLR -7 581 485 340 267 46 46 chr12 23649359 23649490 -120136965 + L2 LINE L2 2510 2640 -674 1268 207 61 51 chr12 23649504 23649915 -120136540 - MLT1C LTR MaLR -45 422 8 889 300 90 26 chr12 23649934 23650526 -120135929 + L2 LINE L2 2637 3282 -31 1072 210 22 121 chr12 23650526 23650931 -120135524 - MLT1A1 LTR MaLR 0 365 1 889 300 90 26 chr12 23650931 23650964 -120135491 + L2 LINE L2 3282 3311 -2 4339 125 55 76 chr12 23652842 23653760 -120132695 + MER4D LTR ERV1 1 898 -5 2593 224 85 16 chr12 23654005 23654696 -120131759 - MER21B LTR ERV1 -124 739 1 2236 159 52 24 chr12 23655087 23655509 -120130946 + Tigger2a DNA MER2_type 1 434 0 454 302 49 69 chr12 23655684 23656135 -120130320 - L1ME LINE L1 -465 5766 5327 2212 252 49 41 chr12 23656440 23657578 -120128877 - L1MEc LINE L1 -3675 2540 1436 490 261 68 38 chr12 23657653 23658048 -120128407 - L1MEc LINE L1 -5242 1154 748 4889 159 26 24 chr12 23658076 23659429 -120127026 - L1PA16 LINE L1 -9 6157 4797 1797 275 40 41 chr12 23659422 23659956 -120126499 - L1MEc LINE L1 -5636 760 226 * 2166 129 0 3 chr12 23659956 23660267 -120126188 + AluSg SINE Alu 1 310 0 1797 275 40 41 chr12 23660267 23660364 -120126091 - L1MEc LINE L1 -6170 226 130 1618 152 13 25 chr12 23660364 23660676 -120125779 + MER4E LTR ERV1 1 296 -470 917 224 46 12 chr12 23660779 23661052 -120125403 - MER61C LTR ERV1 -166 268 1 1656 181 3 27 chr12 23661132 23661425 -120125030 - AluJb SINE Alu -25 287 2 237 333 70 9 chr12 23661441 23661555 -120124900 - MIR SINE MIR -56 206 86 654 261 182 50 chr12 23662173 23662553 -120123902 - L2 LINE L2 -48 3265 2836 1922 176 22 28 chr12 23662589 23662742 -120123713 + MLT1A1 LTR MaLR 4 156 -209 2261 109 0 0 chr12 23662742 23663046 -120123409 + AluSg SINE Alu 1 304 -6 1922 176 22 28 chr12 23663046 23663256 -120123199 + MLT1A1 LTR MaLR 156 365 0 195 291 0 0 chr12 23663351 23663406 -120123049 + L2 LINE L2 3214 3268 -4 187 268 89 0 chr12 23663604 23663660 -120122795 - L2 LINE L2 -11 3261 3201 2289 68 0 56 chr12 23663920 23664241 -120122214 + AluY SINE Alu 1 303 -8 320 325 62 36 chr12 23664489 23664502 -120121953 + L1M4 LINE L1 2953 2964 -3182 6678 74 7 0 chr12 23664502 23666264 -120120191 + L1PA13 LINE L1 4398 6163 0 320 325 62 36 chr12 23666264 23666444 -120120011 + L1M4 LINE L1 2964 3151 -2995 903 231 17 27 chr12 23666498 23666796 -120119659 + L1MEc LINE L1 1999 2293 -4103 2944 251 70 30 chr12 23666893 23667327 -120119128 + L1MEc LINE L1 2243 2658 -3557 1955 149 0 3 chr12 23667327 23667623 -120118832 + AluSx SINE Alu 4 298 -14 2944 251 70 30 chr12 23667623 23668471 -120117984 + L1MEc LINE L1 2658 3751 -2464 2669 106 17 5 chr12 23668453 23668869 -120117586 + L1P5 LINE L1 5369 5789 -367 * 221 115 0 19 chr12 23668875 23668927 -120117528 + (TA)n Simple_repeat Simple_repeat 2 52 0 319 237 0 52 chr12 23668927 23669024 -120117431 + L1MC4 LINE L1 6612 6703 -1339 860 103 0 32 chr12 23669025 23669334 -120117121 + (TA)n Simple_repeat Simple_repeat 2 300 0 327 303 0 0 chr12 23669337 23669426 -120117029 + L1MC4 LINE L1 6614 6702 -1340 317 300 0 0 chr12 23669427 23669517 -120116938 + L1MC4 LINE L1 6614 6703 -1339 225 35 0 0 chr12 23669539 23669568 -120116887 - L1MC/D LINE L1 -538 5821 5793 180 0 0 0 chr12 23669568 23669588 -120116867 + (TG)n Simple_repeat Simple_repeat 2 21 0 225 98 0 0 chr12 23669612 23669653 -120116802 - LTR66 LTR ERVL -172 438 398 * 266 70 0 0 chr12 23669622 23669665 -120116790 + LTR66 LTR ERVL 399 441 -169 2317 127 6 6 chr12 23669695 23669708 -120116747 + L1PB4 LINE L1 5782 5794 -362 204 40 0 0 chr12 23669708 23669733 -120116722 + (CA)n Simple_repeat Simple_repeat 2 26 0 2317 127 6 6 chr12 23669733 23670081 -120116374 + L1PB4 LINE L1 5793 6143 -13 1253 256 24 34 chr12 23670090 23670589 -120115866 + L1ME1 LINE L1 3131 3624 -2522 * 3930 229 74 40 chr12 23670587 23672856 -120113599 + L1ME1 LINE L1 3825 6159 -7 3006 245 70 15 chr12 23672967 23673953 -120112502 + L1PB1 LINE L1 6 1045 -5818 5219 198 17 5 chr12 23673958 23679050 -120107405 + L1PB1 LINE L1 1094 6515 -352 316 71 36 0 chr12 23679050 23679106 -120107349 + (TA)n Simple_repeat Simple_repeat 2 59 0 5219 198 17 5 chr12 23679106 23679463 -120106992 + L1PB1 LINE L1 6515 6866 -1 24 53 0 0 chr12 23679463 23679501 -120106954 + AT_rich Low_complexity Low_complexity 1 38 0 1548 242 163 16 chr12 23680308 23680588 -120105867 - MLT1E2 LTR MaLR 0 626 388 2116 95 29 10 chr12 23680588 23680894 -120105561 - AluSx SINE Alu 0 312 1 1548 242 163 16 chr12 23680894 23681159 -120105296 - MLT1E2 LTR MaLR -238 388 1 22 56 0 0 chr12 23681278 23681314 -120105141 + AT_rich Low_complexity Low_complexity 1 36 0 4506 134 34 5 chr12 23681319 23682089 -120104366 + L1MA8 LINE L1 5497 6288 -3 353 146 53 6 chr12 23682099 23682270 -120104185 + (TA)n Simple_repeat Simple_repeat 2 180 0 204 147 40 0 chr12 23682289 23682364 -120104091 + (TA)n Simple_repeat Simple_repeat 1 78 0 604 212 119 7 chr12 23683254 23683405 -120103050 + L1ME1 LINE L1 5987 6154 -12 215 219 0 0 chr12 23684238 23684279 -120102176 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 669 263 120 14 chr12 23684389 23684606 -120101849 + MIR SINE MIR 23 262 0 449 179 151 9 chr12 23684651 23684757 -120101698 + L2 LINE L2 3189 3309 -4 245 250 0 0 chr12 23684823 23684875 -120101580 + L2 LINE L2 3262 3313 0 28 48 0 0 chr12 23684961 23685003 -120101452 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 23685831 23685859 -120100596 + AT_rich Low_complexity Low_complexity 1 28 0 636 300 130 32 chr12 23686366 23686989 -120099466 + L1ME2 LINE L1 5279 5960 -161 907 305 34 29 chr12 23687011 23687421 -120099034 + L1MC4a LINE L1 5566 5977 -1831 21 95 0 0 chr12 23687590 23687653 -120098802 + AT_rich Low_complexity Low_complexity 1 63 0 224 325 140 9 chr12 23687923 23688037 -120098418 + MIR SINE MIR 18 146 -62 386 168 288 0 chr12 23688269 23688394 -120098061 - MIR SINE MIR 0 262 102 722 194 0 0 chr12 23689164 23689288 -120097167 + FLAM_A SINE Alu 1 124 -9 24 32 0 0 chr12 23689745 23689776 -120096679 + AT_rich Low_complexity Low_complexity 1 31 0 327 204 18 133 chr12 23690616 23690729 -120095726 - MIR SINE MIR -110 152 53 563 318 74 52 chr12 23690851 23691272 -120095183 + L2 LINE L2 2871 3300 -13 24 0 0 0 chr12 23691674 23691698 -120094757 + AT_rich Low_complexity Low_complexity 1 24 0 2001 136 0 0 chr12 23692083 23692363 -120094092 - AluSx SINE Alu -32 280 1 238 266 31 16 chr12 23692418 23692482 -120093973 - L2 LINE L2 0 3313 3249 25 0 0 0 chr12 23693226 23693251 -120093204 + AT_rich Low_complexity Low_complexity 1 25 0 683 264 98 13 chr12 23694085 23694314 -120092141 - MIR SINE MIR 0 262 20 2097 112 3 7 chr12 23696962 23697257 -120089198 - AluSq SINE Alu -19 294 1 249 289 47 31 chr12 23697968 23698096 -120088359 + L1ME4a LINE L1 5977 6106 -15 926 226 197 52 chr12 23699101 23699183 -120087272 + MSTD LTR MaLR 2 71 -325 1673 170 13 3 chr12 23699183 23699483 -120086972 + AluJb SINE Alu 1 303 -9 2173 100 0 17 chr12 23699483 23699784 -120086671 + AluSx SINE Alu 1 296 -16 926 226 197 52 chr12 23699784 23700045 -120086410 + MSTD LTR MaLR 70 396 0 22 0 0 0 chr12 23701120 23701142 -120085313 + AT_rich Low_complexity Low_complexity 1 22 0 1397 153 131 8 chr12 23703548 23703816 -120082639 - AluJo SINE Alu 0 302 2 363 272 122 14 chr12 23703914 23704061 -120082394 - MIR3 SINE MIR 0 208 46 1750 177 3 0 chr12 23704602 23704896 -120081559 - AluJo SINE Alu -17 295 1 21 36 0 0 chr12 23705411 23705439 -120081016 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23706213 23706236 -120080219 + AT_rich Low_complexity Low_complexity 1 23 0 322 309 0 32 chr12 23706333 23706456 -120079999 + MIR SINE MIR 129 247 -15 24 0 0 0 chr12 23707897 23707921 -120078534 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 23708470 23708499 -120077956 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 23709596 23709618 -120076837 + AT_rich Low_complexity Low_complexity 1 22 0 728 237 34 17 chr12 23710025 23710202 -120076253 - MER5A DNA MER1_type -9 180 1 27 29 0 0 chr12 23710995 23711029 -120075426 + AT_rich Low_complexity Low_complexity 1 34 0 204 182 91 0 chr12 23712908 23712952 -120073503 + L2 LINE L2 3265 3312 -1 225 217 14 43 chr12 23712983 23713052 -120073403 - L2 LINE L2 -94 3219 3153 1073 199 142 0 chr12 23713433 23713714 -120072741 - MER33 DNA MER1_type 0 324 4 551 27 27 0 chr12 23713895 23713968 -120072487 - L1PA4 LINE L1 -3 6152 6078 344 284 229 25 chr12 23714263 23714379 -120072076 - L2 LINE L2 -1 3312 3221 342 61 0 0 chr12 23714379 23714428 -120072027 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 284 229 25 chr12 23714428 23714586 -120071869 - L2 LINE L2 -92 3221 2982 2237 123 0 0 chr12 23714942 23715252 -120071203 + AluSx SINE Alu 1 310 -2 2148 116 0 0 chr12 23715457 23715750 -120070705 - AluSx SINE Alu -17 295 3 32 57 0 0 chr12 23715759 23715812 -120070643 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr12 23716058 23716096 -120070359 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 23716310 23716333 -120070122 + AT_rich Low_complexity Low_complexity 1 23 0 278 346 46 8 chr12 23716575 23716705 -120069750 + MIR SINE MIR 17 151 -111 1929 149 0 7 chr12 23717182 23717483 -120068972 - AluJb SINE Alu -13 299 1 1258 167 121 39 chr12 23718028 23718310 -120068145 - AluJb SINE Alu -7 305 1 935 181 75 25 chr12 23718443 23718642 -120067813 + MER20 DNA MER1_type 11 219 0 1649 101 47 0 chr12 23719308 23719565 -120066890 + L1MA2 LINE L1 6035 6303 -1 560 249 120 31 chr12 23719774 23720051 -120066404 + L1MEc LINE L1 1799 2064 -4476 1005 303 157 12 chr12 23720057 23720625 -120065830 - L2 LINE L2 -767 2547 1898 25 51 0 0 chr12 23721268 23721307 -120065148 + AT_rich Low_complexity Low_complexity 1 39 0 991 75 48 0 chr12 23721668 23721814 -120064641 + L1MA2 LINE L1 5980 6132 -172 325 111 0 0 chr12 23721814 23721866 -120064589 + L1MA3 LINE L1 6252 6305 0 26 64 0 0 chr12 23721877 23721924 -120064531 + AT_rich Low_complexity Low_complexity 1 47 0 227 294 82 0 chr12 23722213 23722298 -120064157 + L1ME4a LINE L1 5992 6083 -38 7359 27 16 0 chr12 23723254 23724583 -120061872 + L1PA4 LINE L1 4812 6154 -1 2142 126 0 13 chr12 23725245 23725554 -120060901 - AluSx SINE Alu -7 305 1 198 118 0 0 chr12 23725685 23725719 -120060736 + (TA)n Simple_repeat Simple_repeat 1 34 0 1243 225 51 30 chr12 23725719 23726052 -120060403 - MER2 DNA MER2_type 0 345 6 24 0 0 0 chr12 23727145 23727169 -120059286 + AT_rich Low_complexity Low_complexity 1 24 0 2090 138 0 0 chr12 23727970 23728268 -120058187 + AluSg SINE Alu 1 298 -12 540 265 41 27 chr12 23729367 23729514 -120056941 - MIR SINE MIR -111 151 3 67 73 0 0 chr12 23732977 23733114 -120053341 + AT_rich Low_complexity Low_complexity 1 137 0 1279 130 41 12 chr12 23733569 23733815 -120052640 + L1MA4A LINE L1 6045 6297 -6 408 88 0 0 chr12 23734264 23734321 -120052134 + (CA)n Simple_repeat Simple_repeat 2 58 0 272 344 33 11 chr12 23734653 23734743 -120051712 + L2 LINE L2 3176 3267 -5 731 290 92 0 chr12 23735701 23735918 -120050537 + MIR SINE MIR 15 251 -11 283 357 56 0 chr12 23735920 23736046 -120050409 + L2 LINE L2 2564 2696 -618 2054 122 14 0 chr12 23736286 23736574 -120049881 + AluSx SINE Alu 3 294 -18 322 323 132 36 chr12 23736829 23737049 -120049406 + L2 LINE L2 2994 3234 -38 23 92 0 0 chr12 23738376 23738441 -120048014 + AT_rich Low_complexity Low_complexity 1 65 0 1869 162 0 3 chr12 23739891 23740188 -120046267 - AluSx SINE Alu -14 298 3 2304 86 0 19 chr12 23740673 23740986 -120045469 - AluSx SINE Alu -5 307 1 26 30 0 0 chr12 23741515 23741548 -120044907 + AT_rich Low_complexity Low_complexity 1 33 0 1500 82 5 0 chr12 23741625 23741819 -120044636 - AluSq SINE Alu -2 311 117 438 139 16 131 chr12 23742562 23742684 -120043771 - FLAM_A SINE Alu -34 108 1 2726 10 0 7 chr12 23745250 23745556 -120040899 - AluYb8 SINE Alu -14 304 1 292 214 222 24 chr12 23746044 23746170 -120040285 - MIR SINE MIR -4 258 108 2236 116 0 0 chr12 23746302 23746604 -120039851 + AluSq SINE Alu 2 303 -10 334 214 0 0 chr12 23747094 23747164 -120039291 + MER103 DNA DNA 1 70 -96 665 190 0 0 chr12 23747227 23747343 -120039112 + FLAM_C SINE Alu 1 116 -17 27 62 0 0 chr12 23749287 23749335 -120037120 + AT_rich Low_complexity Low_complexity 1 48 0 31 0 0 0 chr12 23751128 23751159 -120035296 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr12 23752724 23752782 -120033673 + AT_rich Low_complexity Low_complexity 1 58 0 191 36 36 0 chr12 23753019 23753047 -120033408 + (TAA)n Simple_repeat Simple_repeat 2 30 0 35 88 0 0 chr12 23753609 23753700 -120032755 + AT_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr12 23755188 23755210 -120031245 + AT_rich Low_complexity Low_complexity 1 22 0 745 231 90 33 chr12 23758371 23758583 -120027872 + MER58A DNA MER1_type 1 224 0 274 155 190 0 chr12 23758945 23759003 -120027452 + MER58B DNA MER1_type 269 337 -4 1952 148 0 3 chr12 23759309 23759614 -120026841 + AluJb SINE Alu 1 304 -8 28 61 0 0 chr12 23759622 23759671 -120026784 + AT_rich Low_complexity Low_complexity 1 49 0 230 286 0 14 chr12 23760100 23760170 -120026285 - MIR3 SINE MIR -7 201 133 235 300 11 44 chr12 23760170 23760190 -120026265 - L3 LINE CR1 -3 1574 1488 231 246 24 32 chr12 23760204 23760330 -120026125 + (TA)n Simple_repeat Simple_repeat 2 126 0 21 36 0 0 chr12 23760334 23760362 -120026093 + AT_rich Low_complexity Low_complexity 1 28 0 207 316 26 61 chr12 23760500 23760614 -120025841 - MIR3 SINE MIR -93 115 6 227 191 0 21 chr12 23762178 23762225 -120024230 + Tigger5 DNA MER2_type 17 62 -2261 * 1333 146 65 4 chr12 23762223 23762470 -120023985 + Tigger5 DNA MER2_type 2062 2323 0 591 284 107 5 chr12 23762670 23762885 -120023570 - MIR SINE MIR -9 253 17 663 151 9 0 chr12 23762968 23763074 -120023381 + FLAM_C SINE Alu 1 107 -36 745 212 7 0 chr12 23763276 23763413 -120023042 + AluSx SINE Alu 27 164 -148 22 35 0 0 chr12 23763640 23763669 -120022786 + AT_rich Low_complexity Low_complexity 1 29 0 182 37 37 0 chr12 23763683 23763710 -120022745 + (TA)n Simple_repeat Simple_repeat 2 29 0 2223 84 49 0 chr12 23763710 23763996 -120022459 - AluSp SINE Alu -13 300 1 188 318 71 24 chr12 23764792 23764877 -120021578 - L2 LINE L2 -21 3292 3204 683 349 42 47 chr12 23764885 23765292 -120021163 - L3 LINE CR1 -422 1155 751 354 240 66 79 chr12 23765301 23765605 -120020850 + L1MC5 LINE L1 7640 7939 -22 262 154 0 0 chr12 23766065 23766104 -120020351 + MLT1J LTR MaLR 100 138 -373 233 283 40 30 chr12 23766343 23766442 -120020013 + MLT1J LTR MaLR 358 457 -54 446 235 8 8 chr12 23766455 23766697 -120019758 + (TA)n Simple_repeat Simple_repeat 1 242 0 2064 138 3 0 chr12 23766839 23767135 -120019320 - AluSx SINE Alu -15 297 1 262 180 0 0 chr12 23767660 23767721 -120018734 + L1MC4a LINE L1 2213 2273 -4111 753 206 0 0 chr12 23767727 23767882 -120018573 + L1MC4a LINE L1 4942 5096 -1286 2164 100 28 0 chr12 23768434 23768723 -120017732 + AluSp SINE Alu 1 297 -16 273 237 175 18 chr12 23769409 23769523 -120016932 - L2 LINE L2 -15 3298 3167 434 224 246 17 chr12 23769599 23769778 -120016677 + MIR SINE MIR 31 250 -12 1375 185 65 65 chr12 23770192 23770282 -120016173 + L1MC4a LINE L1 5117 5206 -1176 2116 112 0 14 chr12 23770282 23770576 -120015879 + AluSx SINE Alu 1 290 -22 1375 185 65 65 chr12 23770576 23770928 -120015527 + L1MC4a LINE L1 5205 5559 -823 * 1957 182 11 0 chr12 23770924 23771298 -120015157 + L1MB4 LINE L1 5768 6145 -35 23 0 0 0 chr12 23771320 23771343 -120015112 + AT_rich Low_complexity Low_complexity 1 23 0 1135 239 183 16 chr12 23771995 23772488 -120013967 + L1MC4a LINE L1 5529 6103 -1941 21 71 0 0 chr12 23772726 23772768 -120013687 + AT_rich Low_complexity Low_complexity 1 42 0 317 312 81 23 chr12 23772899 23773120 -120013335 + L1ME4a LINE L1 5801 6034 -87 564 179 14 71 chr12 23773647 23773787 -120012668 + FLAM_A SINE Alu 1 132 -1 379 265 173 12 chr12 23774000 23774162 -120012293 + MIR SINE MIR 65 252 -10 866 277 124 25 chr12 23775323 23775832 -120010623 + L2 LINE L2 1605 2163 -1151 886 259 141 15 chr12 23775937 23776090 -120010365 + MER20B DNA MER1_type 82 214 -569 2241 113 10 3 chr12 23776090 23776400 -120010055 + AluSq SINE Alu 1 312 -1 886 259 141 15 chr12 23776400 23776636 -120009819 + MER20B DNA MER1_type 214 520 -263 458 232 66 53 chr12 23776727 23776878 -120009577 + L2 LINE L2 3138 3290 -23 2210 104 0 0 chr12 23776955 23777244 -120009211 + AluSx SINE Alu 1 289 -23 298 236 101 14 chr12 23777271 23777419 -120009036 + MER20B DNA MER1_type 623 783 0 754 286 189 50 chr12 23777431 23778344 -120008111 + L2 LINE L2 2244 3312 -1 449 106 0 96 chr12 23778634 23778728 -120007727 + AluJ/FLAM SINE Alu 1 85 -227 299 270 158 68 chr12 23778803 23779025 -120007430 + L2 LINE L2 2828 3069 -203 574 258 172 23 chr12 23779071 23779292 -120007163 + MIR SINE MIR 7 260 -2 183 302 156 10 chr12 23779315 23779411 -120007044 + L2 LINE L2 3158 3267 -5 198 71 0 0 chr12 23779972 23780000 -120006455 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 61 0 0 chr12 23780087 23780120 -120006335 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr12 23780644 23780669 -120005786 + GC_rich Low_complexity Low_complexity 1 25 0 1964 83 4 0 chr12 23781323 23781575 -120004880 + AluSq SINE Alu 1 253 -60 1631 145 10 72 chr12 23781770 23782074 -120004381 + AluJo SINE Alu 6 290 -22 1565 176 14 4 chr12 23782799 23783097 -120003358 - AluJo SINE Alu 0 302 2 497 340 73 17 chr12 23783588 23783820 -120002635 - MIR SINE MIR 0 262 18 317 120 0 0 chr12 23783929 23783979 -120002476 + U5 snRNA snRNA 1 50 -66 1173 314 62 35 chr12 23784298 23784488 -120001967 + L2 LINE L2 1752 1935 -1379 747 191 0 0 chr12 23784488 23784614 -120001841 - FLAM_A SINE Alu -7 126 1 1173 314 62 35 chr12 23784614 23785016 -120001439 + L2 LINE L2 1935 2360 -954 186 143 0 0 chr12 23785064 23785099 -120001356 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1849 167 3 0 chr12 23785253 23785540 -120000915 - AluJb SINE Alu -14 298 11 2122 104 14 3 chr12 23785743 23786030 -120000425 - AluSq SINE Alu -23 290 1 2185 95 0 7 chr12 23786270 23786581 -119999874 - AluSx SINE Alu 0 309 1 1927 161 7 7 chr12 23786924 23787223 -119999232 + AluSx SINE Alu 1 299 -13 421 375 46 0 chr12 23788224 23788376 -119998079 + L2 LINE L2 2732 2890 -424 1237 287 121 51 chr12 23788510 23789330 -119997125 + L1MC4a LINE L1 5264 6025 -1783 1963 114 179 16 chr12 23789330 23789698 -119996757 + MSTA LTR MaLR 1 428 0 1237 287 121 51 chr12 23789698 23790125 -119996330 + L1MC4a LINE L1 6025 6421 -1387 1721 166 3 42 chr12 23790125 23790433 -119996022 - AluJb SINE Alu 0 312 17 180 0 0 0 chr12 23790436 23790456 -119995999 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1237 287 121 51 chr12 23790456 23790817 -119995638 + L1MC4a LINE L1 6422 6990 -818 4508 100 84 75 chr12 23790836 23791849 -119994606 - MER11A LTR ERVK 0 1266 245 326 67 0 0 chr12 23791852 23791897 -119994558 - MER11A LTR ERVK -1221 45 1 2356 85 0 3 chr12 23791911 23792206 -119994249 + AluY SINE Alu 1 294 -17 1718 232 40 51 chr12 23792217 23792925 -119993530 + L1MC5 LINE L1 6968 7667 -294 935 205 19 19 chr12 23792977 23793182 -119993273 + MLT1E2 LTR MaLR 311 515 -111 1929 163 51 9 chr12 23793302 23793652 -119992803 + MLT1A1 LTR MaLR 1 365 0 2298 101 13 10 chr12 23793870 23794178 -119992277 - AluSx SINE Alu -3 309 1 1329 108 21 16 chr12 23794331 23794525 -119991930 - AluSx SINE Alu -117 195 1 1294 107 23 0 chr12 23794704 23794881 -119991574 - AluSx SINE Alu -131 181 1 299 337 68 92 chr12 23795154 23795403 -119991052 - L2 LINE L2 0 3272 3030 2027 202 114 7 chr12 23795403 23795859 -119990596 - MLT1D LTR MaLR 0 505 1 2137 172 22 15 chr12 23795966 23796368 -119990087 + MSTB LTR MaLR 1 405 -21 260 262 99 43 chr12 23796584 23796725 -119989730 - L2 LINE L2 -526 2788 2640 687 206 17 17 chr12 23796728 23796908 -119989547 - MER96B DNA MER1_type? -1 416 237 216 379 9 0 chr12 23796908 23797024 -119989431 - L2 LINE L2 -673 2641 2525 319 283 57 0 chr12 23797103 23797209 -119989246 - L2 LINE L2 -923 2391 2280 194 384 68 17 chr12 23797427 23797604 -119988851 + L2 LINE L2 451 636 -2678 2181 90 20 23 chr12 23797756 23798056 -119988399 + AluSq SINE Alu 1 299 -14 322 293 203 8 chr12 23798251 23798374 -119988081 + MER91A DNA MER1_type 23 169 -27 1617 189 46 6 chr12 23798381 23798709 -119987746 + MER58B DNA MER1_type 1 341 0 396 360 69 22 chr12 23798722 23799128 -119987327 + L2 LINE L2 1134 1558 -1756 2292 221 25 50 chr12 23799130 23799696 -119986759 + MLT2B3 LTR ERVL 3 554 0 1907 199 53 11 chr12 23799697 23800318 -119986137 + ERVL-B3 LTR ERVL 2 733 -5031 188 271 93 28 chr12 23800328 23800435 -119986020 + L2 LINE L2 1555 1668 -1646 1636 173 0 0 chr12 23800452 23800706 -119985749 - AluJo SINE Alu -58 254 1 560 244 31 19 chr12 23800733 23800893 -119985562 + L2 LINE L2 1956 2117 -1197 968 145 18 130 chr12 23800893 23801224 -119985231 - Charlie1a DNA MER1_type 0 1455 1162 889 250 18 18 chr12 23801234 23801454 -119985001 + MER58A DNA MER1_type 4 223 -1 4508 192 38 58 chr12 23801456 23802047 -119984408 - Charlie1a DNA MER1_type -1595 1166 610 2567 55 0 3 chr12 23802047 23802357 -119984098 - AluY SINE Alu -2 309 1 4508 192 38 58 chr12 23802357 23802955 -119983500 - Charlie1a DNA MER1_type -2151 610 1 1566 242 154 34 chr12 23802955 23803566 -119982889 + L2 LINE L2 2110 2793 -521 465 246 50 57 chr12 23803566 23803811 -119982644 - MLT1H LTR MaLR 0 589 348 1521 238 136 65 chr12 23803921 23804719 -119981736 - LTR28 LTR ERV1 0 1020 107 342 197 145 7 chr12 23804744 23804877 -119981578 - LTR28 LTR ERV1 -476 160 1 1157 223 29 141 chr12 23804912 23805144 -119981311 + MER97c DNA MER1_type? 1 135 -955 2054 125 0 16 chr12 23805144 23805449 -119981006 - AluSx SINE Alu -2 310 11 1157 223 29 141 chr12 23805449 23805777 -119980678 + MER97c DNA MER1_type? 135 498 -592 547 141 0 0 chr12 23805786 23805864 -119980591 + AluJ/FLAM SINE Alu 1 78 -234 317 259 40 23 chr12 23805917 23806091 -119980364 + MER97c DNA MER1_type? 883 1059 -31 821 127 7 7 chr12 23806092 23806234 -119980221 + L1MB3 LINE L1 6042 6183 0 326 220 17 0 chr12 23806238 23806297 -119980158 + MER5B DNA MER1_type 61 120 -58 316 307 62 62 chr12 23806336 23806561 -119979894 + L1MEd LINE L1 967 1191 -4928 2023 152 0 0 chr12 23806848 23807138 -119979317 + AluJb SINE Alu 5 294 -18 31 44 0 0 chr12 23807188 23807233 -119979222 + AT_rich Low_complexity Low_complexity 1 45 0 2206 115 3 0 chr12 23807787 23808083 -119978372 - AluSp SINE Alu -16 297 1 2598 144 2 79 chr12 23808224 23808730 -119977725 - MLT1C LTR MaLR 0 467 1 1927 158 14 0 chr12 23809326 23809644 -119976811 + AluJb SINE Alu 1 322 0 2325 98 0 0 chr12 23809893 23810188 -119976267 - AluY SINE Alu -16 295 1 647 210 0 8 chr12 23810211 23810330 -119976125 + FRAM SINE Alu 1 113 -63 25 0 0 0 chr12 23810341 23810366 -119976089 + AT_rich Low_complexity Low_complexity 1 25 0 2105 141 7 0 chr12 23810508 23810812 -119975643 - AluSx SINE Alu -6 306 1 1136 156 32 18 chr12 23811480 23811698 -119974757 + AluJo SINE Alu 87 307 -5 2021 131 3 0 chr12 23811765 23812071 -119974384 + AluSx SINE Alu 1 307 0 1201 130 0 0 chr12 23812252 23812414 -119974041 - AluSg/x SINE Alu -17 295 134 1822 225 28 24 chr12 23812732 23812857 -119973598 + L1ME1 LINE L1 5331 5454 -712 1517 220 56 11 chr12 23812857 23813230 -119973225 - MLT1B LTR MaLR 0 390 1 1822 225 28 24 chr12 23813230 23813550 -119972905 + L1ME1 LINE L1 5454 5781 -385 180 0 0 0 chr12 23813550 23813570 -119972885 + (TA)n Simple_repeat Simple_repeat 2 21 0 1822 225 28 24 chr12 23813570 23813616 -119972839 + L1ME1 LINE L1 5781 5825 -341 * 2056 211 79 49 chr12 23813612 23814058 -119972397 - L1ME LINE L1 -392 5774 5343 1011 192 6 0 chr12 23814058 23814230 -119972225 - FAM SINE Alu -2 173 1 2056 211 79 49 chr12 23814230 23814579 -119971876 - L1ME LINE L1 -823 5343 4935 2708 133 21 16 chr12 23814579 23815007 -119971448 - MSTB1 LTR MaLR 0 432 3 2056 211 79 49 chr12 23815007 23815155 -119971300 - L1ME LINE L1 -1231 4935 4793 26 30 0 0 chr12 23815158 23815191 -119971264 + AT_rich Low_complexity Low_complexity 1 33 0 316 216 11 34 chr12 23815205 23815293 -119971162 + L1MC4 LINE L1 6616 6701 -1341 211 176 40 27 chr12 23815294 23815368 -119971087 + (TA)n Simple_repeat Simple_repeat 1 75 0 292 167 106 0 chr12 23815416 23815482 -119970973 - L1ME LINE L1 -1364 4782 4710 806 168 61 5 chr12 23815482 23815678 -119970777 + MER114 LTR ERV 19 225 -423 186 43 0 0 chr12 23815678 23815701 -119970754 + (TG)n Simple_repeat Simple_repeat 2 24 0 809 129 0 9 chr12 23815701 23815817 -119970638 - FLAM_C SINE Alu -26 117 3 318 215 90 35 chr12 23815817 23815961 -119970494 + MER114 LTR ERV 212 363 -285 453 205 34 8 chr12 23816022 23816139 -119970316 + MER114 LTR ERV 499 618 -30 1762 138 69 0 chr12 23816354 23816629 -119969826 - AluSx SINE Alu -18 294 1 887 114 0 0 chr12 23816652 23816775 -119969680 - AluSg/x SINE Alu -16 294 172 267 157 0 0 chr12 23816805 23816856 -119969599 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 759 181 0 0 chr12 23816896 23817012 -119969443 - FLAM_C SINE Alu -15 118 3 417 286 0 0 chr12 23817228 23817354 -119969101 - L1ME1 LINE L1 -5 6161 6036 995 198 25 25 chr12 23817358 23817596 -119968859 + L1ME2 LINE L1 5679 5916 -248 1171 163 6 0 chr12 23817762 23817934 -119968521 + AluSx SINE Alu 1 173 -139 1779 129 14 30 chr12 23817992 23818287 -119968168 + AluSx SINE Alu 1 290 -22 2160 154 46 29 chr12 23818302 23818717 -119967738 - Tigger2a DNA MER2_type -2 432 11 2018 126 14 7 chr12 23819087 23819380 -119967075 + AluSx SINE Alu 1 295 -17 465 19 0 0 chr12 23819752 23819806 -119966649 + (CA)n Simple_repeat Simple_repeat 2 55 0 2342 161 47 79 chr12 23819839 23820411 -119966044 + MER41C LTR ERV1 1 554 0 2268 107 0 0 chr12 23821020 23821318 -119965137 - AluSc SINE Alu -11 298 1 310 258 0 0 chr12 23821607 23821669 -119964786 + L2 LINE L2 3248 3309 -4 238 303 11 22 chr12 23821868 23821957 -119964498 - MLT1-int LTR MaLR -1279 92 5 433 209 76 0 chr12 23822075 23822180 -119964275 + Charlie4 DNA MER1_type 1841 1953 -8 2267 54 50 0 chr12 23822188 23822467 -119963988 - AluSp SINE Alu -20 293 1 1387 143 0 0 chr12 23822679 23822882 -119963573 + AluJo SINE Alu 87 289 -23 1419 160 0 0 chr12 23822883 23823095 -119963360 - AluJb SINE Alu -99 213 2 2198 105 3 16 chr12 23823443 23823757 -119962698 + AluSq SINE Alu 1 310 -3 521 208 92 25 chr12 23823942 23824062 -119962393 - FLAM_C SINE Alu -15 128 1 1093 192 0 0 chr12 23824147 23824329 -119962126 - AluJo SINE Alu -44 268 87 2011 159 0 0 chr12 23824738 23825046 -119961409 - AluSx SINE Alu -1 311 4 2031 106 53 0 chr12 23825804 23826086 -119960369 + AluSc SINE Alu 1 297 -12 821 160 8 0 chr12 23826375 23826506 -119959949 - FLAM_C SINE Alu -11 132 1 1941 146 13 7 chr12 23827024 23827333 -119959122 + AluJo SINE Alu 1 311 -1 328 247 46 93 chr12 23827979 23828173 -119958282 - L1MC5 LINE L1 -37 7924 7740 569 163 0 0 chr12 23829320 23829406 -119957049 - FRAM SINE Alu -52 124 39 1980 107 3 27 chr12 23829432 23829731 -119956724 - AluSx SINE Alu -20 292 1 504 293 60 0 chr12 23829731 23829946 -119956509 - L1ME4a LINE L1 -292 5829 5602 257 261 0 14 chr12 23830223 23830292 -119956163 + CT-rich Low_complexity Low_complexity 4 71 0 528 299 83 18 chr12 23830422 23830639 -119955816 - L3 LINE CR1 -225 1352 1122 2038 140 0 34 chr12 23830866 23831188 -119955267 + AluSq SINE Alu 1 311 -2 803 11 0 0 chr12 23831212 23831306 -119955149 - L1PA2 LINE L1 -3 6152 6059 24 53 0 0 chr12 23831351 23831389 -119955066 + AT_rich Low_complexity Low_complexity 1 38 0 2060 136 0 10 chr12 23832092 23832394 -119954061 + AluSx SINE Alu 1 299 -13 2188 106 0 20 chr12 23833820 23834123 -119952332 - AluSx SINE Alu -15 297 1 1688 160 80 12 chr12 23835062 23835387 -119951068 + MER7A DNA MER2_type 1 345 -1 264 300 106 62 chr12 23835396 23835556 -119950899 - L2 LINE L2 0 3313 3147 26 30 0 0 chr12 23835727 23835760 -119950695 + AT_rich Low_complexity Low_complexity 1 33 0 2321 92 3 16 chr12 23836176 23836491 -119949964 - AluSq SINE Alu 0 313 3 189 125 200 0 chr12 23836829 23836869 -119949586 - L2 LINE L2 -5 3308 3261 180 0 0 0 chr12 23836890 23836910 -119949545 + (CA)n Simple_repeat Simple_repeat 1 20 0 282 306 75 0 chr12 23837090 23837224 -119949231 - MIR SINE MIR 0 262 119 307 136 29 37 chr12 23837326 23837405 -119949050 + L1MB2 LINE L1 6077 6161 -10 387 0 0 0 chr12 23837413 23837456 -119948999 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 391 191 73 0 chr12 23837466 23837576 -119948879 + L1ME4a LINE L1 5798 5915 -206 326 263 17 8 chr12 23837590 23837708 -119948747 + (TA)n Simple_repeat Simple_repeat 1 119 0 1069 142 0 0 chr12 23837708 23837863 -119948592 - AluSg/x SINE Alu -18 294 140 478 208 10 10 chr12 23838030 23838126 -119948329 + L1 LINE L1 1499 1594 -5902 * 6153 192 23 19 chr12 23838114 23838275 -119948180 + L1 LINE L1 3412 3571 -3994 1616 188 98 19 chr12 23838275 23838642 -119947813 + MSTD LTR MaLR 1 396 0 6153 192 23 19 chr12 23838642 23839998 -119946457 + L1 LINE L1 3571 4942 -2623 4579 185 25 21 chr12 23840003 23840706 -119945749 + L1 LINE L1 5703 6415 -1160 1782 165 0 3 chr12 23840706 23841019 -119945436 - AluJb SINE Alu 0 312 1 4579 185 25 21 chr12 23841019 23841411 -119945044 + L1 LINE L1 6415 6804 -771 3948 131 18 31 chr12 23841423 23841498 -119944957 + L1MA7 LINE L1 5254 5328 -963 2295 125 0 0 chr12 23841498 23841810 -119944645 + AluSx SINE Alu 1 312 0 3948 131 18 31 chr12 23841810 23842443 -119944012 + L1MA7 LINE L1 5328 5953 -338 959 169 0 0 chr12 23842443 23842591 -119943864 + AluSg/x SINE Alu 135 282 -30 386 85 17 0 chr12 23842593 23842652 -119943803 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 198 103 0 0 chr12 23842657 23842686 -119943769 + (A)n Simple_repeat Simple_repeat 1 29 0 680 147 93 20 chr12 23842703 23842853 -119943602 + L1MA7 LINE L1 5936 6096 -195 1758 37 9 0 chr12 23842853 23843103 -119943352 + L1PA7 LINE L1 5923 6174 0 1039 104 6 16 chr12 23843107 23843290 -119943165 + L1MA7 LINE L1 6111 6291 0 27 0 0 0 chr12 23843861 23843888 -119942567 + AT_rich Low_complexity Low_complexity 1 27 0 1564 162 0 12 chr12 23844157 23844410 -119942045 - AluJb SINE Alu -62 250 1 2535 154 7 23 chr12 23844551 23844980 -119941475 + MSTB LTR MaLR 5 426 0 2658 15 2 2 chr12 23845340 23845757 -119940698 - L1P1 LINE L1 -661 5494 5078 24 53 0 0 chr12 23845817 23845855 -119940600 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 23848474 23848502 -119937953 + AT_rich Low_complexity Low_complexity 1 28 0 1186 133 11 6 chr12 23849289 23849469 -119936986 + AluSq SINE Alu 1 181 -132 583 180 0 0 chr12 23849470 23849570 -119936885 - AluJb SINE Alu -209 103 4 449 269 55 33 chr12 23849573 23849755 -119936700 - MIR SINE MIR -76 186 1 309 120 0 0 chr12 23849991 23850041 -119936414 + L1MA1 LINE L1 6212 6261 -41 235 236 0 0 chr12 23850478 23850533 -119935922 + (TCG)n Simple_repeat Simple_repeat 2 56 0 187 174 153 122 chr12 23853241 23853339 -119933116 - MIR SINE MIR -42 220 120 615 294 32 0 chr12 23854027 23854214 -119932241 + MIR SINE MIR 1 193 -69 188 346 168 0 chr12 23854241 23854342 -119932113 - L2 LINE L2 -40 3232 3115 24 53 0 0 chr12 23854837 23854875 -119931580 + AT_rich Low_complexity Low_complexity 1 38 0 219 330 102 8 chr12 23855529 23855647 -119930808 - L2 LINE L2 -224 3048 2920 2172 106 7 7 chr12 23855697 23856019 -119930436 - AluSx SINE Alu 0 312 1 422 250 22 101 chr12 23856134 23856286 -119930169 - MER112 DNA MER1_type -6 254 130 2507 61 0 0 chr12 23856286 23856581 -119929874 - AluSp SINE Alu -16 297 3 422 250 22 101 chr12 23856581 23856696 -119929759 - MER112 DNA MER1_type -130 130 8 208 331 101 14 chr12 23856709 23856848 -119929607 - L2 LINE L2 -687 2627 2477 311 222 151 32 chr12 23857442 23857568 -119928887 - L1ME4a LINE L1 -187 5934 5794 1600 165 30 20 chr12 23857608 23857905 -119928550 - AluJo SINE Alu -7 305 6 1228 241 79 18 chr12 23857915 23858359 -119928096 - L1ME3A LINE L1 -222 6017 5547 749 112 0 0 chr12 23858368 23858475 -119927980 - AluSq/x SINE Alu -206 107 1 1873 254 160 25 chr12 23858475 23859582 -119926873 - L1ME3A LINE L1 -1331 4884 3659 232 184 184 10 chr12 23859604 23859702 -119926753 - L1ME3A LINE L1 -2827 3388 3274 516 161 34 2 chr12 23859705 23859821 -119926634 - AluJb SINE Alu -16 296 185 189 0 0 0 chr12 23859821 23859842 -119926613 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 516 161 34 2 chr12 23859842 23859961 -119926494 - AluJb SINE Alu -127 185 1 245 240 40 10 chr12 23859987 23860087 -119926368 - L1ME3A LINE L1 -2982 3233 3131 255 198 21 42 chr12 23860686 23860782 -119925673 - L1ME3A LINE L1 -3197 3018 2925 35 41 0 0 chr12 23860793 23860842 -119925613 + AT_rich Low_complexity Low_complexity 1 49 0 448 298 7 0 chr12 23860867 23861018 -119925437 - L1ME3A LINE L1 -3319 2896 2745 1340 169 69 15 chr12 23861031 23861291 -119925164 + AluJb SINE Alu 30 303 -9 818 235 38 1 chr12 23861459 23861688 -119924767 - L1ME3A LINE L1 -3587 2628 2384 1606 164 19 0 chr12 23861714 23861982 -119924473 - MER2 DNA MER2_type -1 344 72 355 193 0 72 chr12 23862025 23862108 -119924347 - MER2 DNA MER2_type -261 84 8 1121 258 28 70 chr12 23862116 23862504 -119923951 - L1ME3A LINE L1 -5988 408 37 334 259 135 39 chr12 23862764 23863127 -119923328 + HAL1 LINE L1 2002 2399 -108 2210 118 0 0 chr12 23863362 23863658 -119922797 - AluSx SINE Alu -16 296 1 291 326 79 26 chr12 23863939 23864206 -119922249 - L1MC5 LINE L1 -173 7788 7508 641 176 53 15 chr12 23864322 23864453 -119922002 - AluSq/x SINE Alu -176 136 1 2147 93 17 0 chr12 23864501 23864790 -119921665 + AluSq SINE Alu 1 294 -19 363 246 52 45 chr12 23865006 23865140 -119921315 - L1MC5 LINE L1 -818 7143 7009 26 74 0 0 chr12 23865609 23865663 -119920792 + AT_rich Low_complexity Low_complexity 1 54 0 858 230 72 8 chr12 23865711 23865946 -119920509 - MIR SINE MIR -11 251 2 1634 190 43 30 chr12 23866200 23866683 -119919772 - MER90 LTR ERV1 -1 613 79 21 36 0 0 chr12 23866843 23866871 -119919584 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 23868281 23868303 -119918152 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr12 23869256 23869279 -119917176 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr12 23869544 23869566 -119916889 + AT_rich Low_complexity Low_complexity 1 22 0 343 177 186 40 chr12 23869697 23869821 -119916634 - Charlie1 DNA MER1_type 0 2761 2620 * 971 246 58 9 chr12 23869806 23870030 -119916425 - Charlie1 DNA MER1_type -2525 236 2 22 0 0 0 chr12 23870092 23870114 -119916341 + AT_rich Low_complexity Low_complexity 1 22 0 1662 148 21 0 chr12 23870688 23870978 -119915477 - L1MA4 LINE L1 -5 6295 6000 207 278 83 28 chr12 23871463 23871535 -119914920 - L2 LINE L2 -1007 2307 2232 6250 182 27 40 chr12 23873160 23875796 -119910659 - L1MC1 LINE L1 -1 6332 3740 37 39 0 0 chr12 23875802 23875853 -119910602 + AT_rich Low_complexity Low_complexity 1 51 0 4219 196 31 32 chr12 23876010 23876045 -119910410 - L1MB2 LINE L1 -4 6167 6133 2136 201 37 61 chr12 23876045 23876668 -119909787 - LTR9 LTR ERV1 0 612 5 4219 196 31 32 chr12 23876668 23876789 -119909666 - L1MB2 LINE L1 -38 6133 6013 1995 99 13 16 chr12 23876789 23877092 -119909363 - AluSx SINE Alu -10 302 1 4219 196 31 32 chr12 23877092 23878838 -119907617 - L1MB2 LINE L1 -158 6013 4269 1034 209 13 5 chr12 23879068 23879368 -119907087 + MLT1A1 LTR MaLR 1 365 0 2064 102 10 7 chr12 23880081 23880374 -119906081 - AluSq SINE Alu -19 294 1 2320 109 0 0 chr12 23880431 23880743 -119905712 - AluSq SINE Alu -1 312 1 183 386 48 35 chr12 23880860 23881005 -119905450 - MIR3 SINE MIR -12 196 50 206 231 0 0 chr12 23882103 23882142 -119904313 + (TG)n Simple_repeat Simple_repeat 1 39 0 602 296 109 87 chr12 23882480 23882929 -119903526 - MLT1K LTR MaLR -41 547 89 546 262 28 21 chr12 23883080 23883221 -119903234 + MER5B DNA MER1_type 2 143 -35 551 221 79 57 chr12 23883221 23883564 -119902891 - MER31A-int LTR ERV1 -4507 429 22 2334 143 70 15 chr12 23883601 23884061 -119902394 - MER31A LTR ERV1 0 485 1 621 226 81 68 chr12 23884596 23884817 -119901638 + MIR SINE MIR 3 226 -36 189 0 0 0 chr12 23885141 23885162 -119901293 + (A)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr12 23885748 23885792 -119900663 + AT_rich Low_complexity Low_complexity 1 44 0 198 261 0 0 chr12 23885808 23885854 -119900601 + MIR SINE MIR 104 149 -113 2109 109 0 62 chr12 23887174 23887494 -119898961 - AluSq SINE Alu -13 300 1 1710 168 10 29 chr12 23887494 23887804 -119898651 - AluJo SINE Alu -8 304 1 26 0 0 0 chr12 23889260 23889286 -119897169 + AT_rich Low_complexity Low_complexity 1 26 0 237 427 0 19 chr12 23890206 23890309 -119896146 + MIR SINE MIR 20 120 -142 282 332 39 33 chr12 23890329 23890489 -119895966 + MER5B DNA MER1_type 15 184 -5 846 242 47 5 chr12 23890627 23890838 -119895617 - MER58A DNA MER1_type -1 223 4 183 80 0 0 chr12 23891881 23891906 -119894549 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 23892061 23892083 -119894372 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 23893623 23893644 -119892811 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 23893844 23893872 -119892583 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23894213 23894236 -119892219 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 23894419 23894445 -119892010 + AT_rich Low_complexity Low_complexity 1 26 0 555 137 0 0 chr12 23894841 23894936 -119891519 + FLAM_C SINE Alu 48 142 -1 27 29 0 0 chr12 23894981 23895015 -119891440 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr12 23895076 23895125 -119891330 + AT_rich Low_complexity Low_complexity 1 49 0 2603 36 0 10 chr12 23896663 23896970 -119889485 + AluY SINE Alu 1 304 -7 226 272 117 19 chr12 23897027 23897130 -119889325 - MIR SINE MIR -50 212 100 26 0 0 0 chr12 23897477 23897503 -119888952 + AT_rich Low_complexity Low_complexity 1 26 0 553 105 0 0 chr12 23898137 23898213 -119888242 + AluSg/x SINE Alu 216 291 -19 468 252 39 10 chr12 23898934 23899037 -119887418 + L2 LINE L2 3208 3313 0 1467 173 52 24 chr12 23900178 23900467 -119885988 - AluJb SINE Alu -15 297 1 1701 184 3 7 chr12 23900469 23900763 -119885692 - AluJo SINE Alu -19 293 1 7876 87 6 3 chr12 23901120 23903015 -119883440 - L1PA7 LINE L1 -4 6150 4255 389 306 33 22 chr12 23903338 23903521 -119882934 + L2 LINE L2 1802 1986 -1328 1954 205 35 73 chr12 23904129 23904705 -119881750 - MLT2B3 LTR ERVL 0 554 1 1940 142 30 0 chr12 23904802 23905098 -119881357 - AluSx SINE Alu -7 305 1 5747 193 65 21 chr12 23906604 23907993 -119878462 - Charlie1a DNA MER1_type -1 1454 1 285 211 118 0 chr12 23908167 23908243 -119878212 - MIR SINE MIR -101 161 77 651 130 89 16 chr12 23908360 23908483 -119877972 - FRAM SINE Alu -14 162 31 389 314 34 19 chr12 23908568 23908739 -119877716 - MIR SINE MIR -55 153 37 252 0 0 0 chr12 23911953 23911981 -119874474 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr12 23914009 23914037 -119872418 + AT_rich Low_complexity Low_complexity 1 28 0 2044 231 82 75 chr12 23916290 23916737 -119869718 - L1MC4 LINE L1 -502 7540 7083 210 37 0 0 chr12 23916737 23916764 -119869691 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 2044 231 82 75 chr12 23916764 23917182 -119869273 - L1MC4 LINE L1 -959 7083 6669 250 35 0 0 chr12 23917226 23917255 -119869200 - U2 snRNA snRNA -152 36 8 3549 147 210 90 chr12 23917395 23918705 -119867750 - pTR5 LTR ERV1 0 1683 31 900 197 107 122 chr12 23918705 23919215 -119867240 - L1MD3 LINE L1 -476 7519 6842 460 162 0 0 chr12 23919217 23919291 -119867164 + LTR9 LTR ERV1 1 74 -538 1265 138 5 15 chr12 23919296 23919492 -119866963 + AluSx SINE Alu 11 204 -108 257 67 0 22 chr12 23920277 23920322 -119866133 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 351 253 58 95 chr12 23920888 23921078 -119865377 - MIR SINE MIR 0 262 80 266 246 16 0 chr12 23921517 23921578 -119864877 - L2 LINE L2 -6 3307 3246 425 184 43 0 chr12 23921660 23921823 -119864632 + (TA)n Simple_repeat Simple_repeat 2 171 0 217 183 17 50 chr12 23921828 23921888 -119864567 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 1523 162 35 28 chr12 23922008 23922292 -119864163 - AluJb SINE Alu -26 286 1 5402 86 116 37 chr12 23923212 23924292 -119862163 - MER11A LTR ERVK 0 1266 1 4115 86 9 0 chr12 23924340 23924889 -119861566 + MER41A LTR ERV1 1 554 0 5476 153 131 4 chr12 23924976 23925941 -119860514 + MER41A-int LTR ERV1 3 1089 -4857 351 0 0 0 chr12 23925941 23925980 -119860475 + (TG)n Simple_repeat Simple_repeat 2 40 0 11258 151 60 35 chr12 23925980 23926282 -119860173 + MER41A-int LTR ERV1 1359 1652 -3363 2352 86 0 3 chr12 23926282 23926584 -119859871 - AluSc SINE Alu -8 301 1 11258 151 60 35 chr12 23926584 23927485 -119858970 + MER41A-int LTR ERV1 1652 2530 -2485 2155 140 0 0 chr12 23927485 23927792 -119858663 - AluSx SINE Alu -5 307 1 11258 151 60 35 chr12 23927792 23929059 -119857396 + MER41A-int LTR ERV1 2530 4384 -631 2803 95 5 3 chr12 23931805 23932193 -119854262 + MER41A LTR ERV1 166 554 0 308 336 45 37 chr12 23932811 23932945 -119853510 - L2 LINE L2 -15 3298 3164 680 91 30 0 chr12 23932945 23933044 -119853411 + MER51D LTR ERV1 482 583 -74 684 273 128 37 chr12 23933488 23934175 -119852280 - L1ME LINE L1 -397 5765 5009 2642 175 77 39 chr12 23934220 23935409 -119851046 - L1MC2 LINE L1 -185 6159 5016 1867 133 0 0 chr12 23935409 23935665 -119850790 - AluSx SINE Alu -14 298 43 2642 175 77 39 chr12 23935665 23935701 -119850754 - L1MC2 LINE L1 -1328 5016 4983 1921 150 17 0 chr12 23935701 23935994 -119850461 - AluJo SINE Alu -14 298 1 2642 175 77 39 chr12 23935994 23936169 -119850286 - L1MC2 LINE L1 -1361 4983 4550 500 340 58 19 chr12 23936178 23936696 -119849759 - L1ME LINE L1 -1112 5034 4497 2402 77 3 0 chr12 23937018 23937329 -119849126 + AluSx SINE Alu 1 312 0 1384 216 51 25 chr12 24037851 24038207 -119748248 + MLT1A1 LTR MaLR 1 365 0 5598 77 1 0 chr12 24038924 24039661 -119746794 + L1PA5 LINE L1 5413 6150 -4 24 91 0 0 chr12 24041866 24041932 -119744523 + AT_rich Low_complexity Low_complexity 1 66 0 27 29 0 0 chr12 24045051 24045085 -119741370 + AT_rich Low_complexity Low_complexity 1 34 0 305 322 63 38 chr12 24045189 24045428 -119741027 + MIR SINE MIR 18 262 0 1538 204 0 35 chr12 24045457 24045746 -119740709 + AluJo SINE Alu 7 285 -27 21 36 0 0 chr12 24045746 24045774 -119740681 + AT_rich Low_complexity Low_complexity 1 28 0 535 264 49 25 chr12 24045907 24046070 -119740385 - MIR SINE MIR 0 262 96 2432 297 80 41 chr12 24046412 24048350 -119738105 - L1MC4 LINE L1 -347 7541 5439 12332 209 39 27 chr12 24048351 24052151 -119734304 + L1MA9 LINE L1 2331 6177 -371 339 287 48 41 chr12 24052285 24052631 -119733824 + L1 LINE L1 4885 5233 -913 519 263 19 19 chr12 24052681 24052837 -119733618 - L1MA9 LINE L1 -38 6274 6119 1429 261 126 41 chr12 24053115 24053981 -119732474 - L2 LINE L2 0 3313 2390 1186 150 5 39 chr12 24053981 24054188 -119732267 - MLT1B LTR MaLR 0 390 191 706 112 0 0 chr12 24054246 24054344 -119732111 - AluSc SINE Alu -84 225 128 1235 280 131 18 chr12 24054456 24054765 -119731690 - L2 LINE L2 -1159 2155 1882 2341 101 0 0 chr12 24054765 24055073 -119731382 + AluY SINE Alu 1 308 -3 1235 280 131 18 chr12 24055073 24055327 -119731128 - L2 LINE L2 -1432 1882 1528 277 227 23 11 chr12 24055348 24055436 -119731019 + (TA)n Simple_repeat Simple_repeat 1 89 0 243 0 0 0 chr12 24055928 24055955 -119730500 + (TA)n Simple_repeat Simple_repeat 1 27 0 254 339 23 0 chr12 24056079 24056209 -119730246 + L2 LINE L2 2475 2607 -707 36 23 0 0 chr12 24058251 24058294 -119728161 + AT_rich Low_complexity Low_complexity 1 43 0 1902 136 3 35 chr12 24059450 24059766 -119726689 + AluSg SINE Alu 1 306 -4 1956 60 134 0 chr12 24061140 24061408 -119725047 - AluY SINE Alu -6 305 2 2674 40 0 0 chr12 24061418 24061743 -119724712 - L1PA3 LINE L1 0 6155 5831 8786 36 3 0 chr12 24061743 24062819 -119723636 + L1P LINE L1 1788 2866 -3280 1920 132 0 4 chr12 24063008 24063312 -119723143 - AluSx SINE Alu 0 308 6 207 0 0 0 chr12 24064049 24064072 -119722383 + (TG)n Simple_repeat Simple_repeat 1 23 0 39 38 0 0 chr12 24064118 24064171 -119722284 + AT_rich Low_complexity Low_complexity 1 53 0 2125 121 7 0 chr12 24064322 24064619 -119721836 - AluSx SINE Alu -13 299 1 212 361 68 0 chr12 24064918 24065051 -119721404 - MIR SINE MIR -29 233 92 3167 157 41 5 chr12 24065162 24065742 -119720713 + LTR26 LTR ERV1 3 603 0 745 274 25 5 chr12 24066403 24066600 -119719855 - MER58A DNA MER1_type 0 224 24 181 324 95 0 chr12 24066621 24066695 -119719760 - MIR SINE MIR -76 186 106 438 273 61 18 chr12 24066696 24066861 -119719594 - LTR33A LTR ERVL 0 523 352 554 125 12 0 chr12 24068018 24068098 -119718357 + Tigger2 DNA MER2_type 1 81 -2637 1030 141 12 0 chr12 24068203 24068366 -119718089 - MSTA LTR MaLR -263 165 1 729 333 14 18 chr12 24068380 24068713 -119717742 + L2 LINE L2 2703 3033 -280 1464 219 128 35 chr12 24068758 24069220 -119717235 + MLT1D LTR MaLR 1 505 0 336 271 118 24 chr12 24069231 24069401 -119717054 + L2 LINE L2 3094 3279 -34 231 204 19 19 chr12 24069417 24069471 -119716984 + GA-rich Low_complexity Low_complexity 4 57 0 200 354 70 25 chr12 24069521 24069679 -119716776 + L3 LINE CR1 1067 1231 -346 2019 102 39 21 chr12 24069747 24070080 -119716375 + L1MA7 LINE L1 5949 6287 -4 3724 145 7 0 chr12 24070125 24070724 -119715731 + L1PB4 LINE L1 5547 6149 -7 209 369 0 15 chr12 24070820 24070885 -119715570 + L3 LINE CR1 1464 1527 -50 893 309 87 38 chr12 24071568 24072509 -119713946 + L1ME3 LINE L1 3416 4402 -1744 702 284 90 28 chr12 24072544 24073044 -119713411 + MLT1G1 LTR MaLR 8 562 -5 410 273 89 30 chr12 24073141 24073478 -119712977 + L1ME3 LINE L1 4699 5055 -1091 328 315 24 16 chr12 24073513 24073640 -119712815 + L1ME3 LINE L1 5265 5378 -786 302 87 0 0 chr12 24073643 24073689 -119712766 + L1ME1 LINE L1 6120 6165 -1 782 270 93 9 chr12 24073693 24074122 -119712333 + L1ME3 LINE L1 5374 5838 -324 3388 104 2 0 chr12 24074205 24074697 -119711758 + L1PA13 LINE L1 5671 6163 0 39407 74 12 8 chr12 24074720 24076521 -119709934 + L1P LINE L1 11 1804 -4342 2892 3 0 0 chr12 24076521 24076831 -119709624 - AluYa5 SINE Alu -1 310 1 39407 74 12 8 chr12 24076831 24080371 -119706084 + L1P LINE L1 1804 5371 -775 300 53 0 0 chr12 24080477 24080515 -119705940 + (TA)n Simple_repeat Simple_repeat 1 38 0 733 206 0 0 chr12 24080532 24080658 -119705797 - FLAM_C SINE Alu -17 126 1 225 0 0 0 chr12 24080695 24080720 -119705735 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1109 280 38 8 chr12 24080990 24081493 -119704962 - L1MEc LINE L1 -4576 1820 1303 43 56 0 0 chr12 24081734 24081805 -119704650 + AT_rich Low_complexity Low_complexity 1 71 0 3956 127 14 13 chr12 24082413 24083043 -119703412 + Tigger2 DNA MER2_type 112 742 -1976 1605 159 4 0 chr12 24083110 24083367 -119703088 + Tigger2 DNA MER2_type 2461 2718 0 590 261 108 30 chr12 24083895 24084090 -119702365 + MIR SINE MIR 6 216 -46 510 270 151 13 chr12 24084090 24084249 -119702206 - MER5A DNA MER1_type 0 189 9 197 260 20 0 chr12 24084251 24084301 -119702154 + MIR SINE MIR 202 252 -10 374 348 14 14 chr12 24085209 24085347 -119701108 + MIR SINE MIR 19 156 -106 290 163 0 0 chr12 24087149 24087198 -119699257 - MLT1H LTR MaLR -461 88 40 208 135 19 19 chr12 24087611 24087663 -119698792 + (TA)n Simple_repeat Simple_repeat 1 52 0 296 306 133 20 chr12 24088027 24088223 -119698232 + ERVL LTR ERVL 788 1005 -4759 471 18 0 0 chr12 24088238 24088294 -119698161 + (TG)n Simple_repeat Simple_repeat 2 57 0 795 337 68 49 chr12 24088340 24088515 -119697940 + ERVL LTR ERVL 1087 1257 -4507 791 298 9 0 chr12 24088515 24088733 -119697722 + MER58A DNA MER1_type 5 224 0 795 337 68 49 chr12 24088733 24089172 -119697283 + ERVL LTR ERVL 1257 1713 -4051 985 286 29 25 chr12 24089221 24089536 -119696919 + ERVL LTR ERVL 1823 2138 -3626 352 312 50 21 chr12 24089562 24089898 -119696557 + ERVL LTR ERVL 3274 3694 -2070 958 243 115 10 chr12 24090187 24090492 -119695963 - L2 LINE L2 -470 2844 2508 22 56 0 0 chr12 24090801 24090837 -119695618 + AT_rich Low_complexity Low_complexity 1 36 0 1647 184 40 58 chr12 24090863 24091260 -119695195 + MLT1B LTR MaLR 1 390 0 287 320 194 8 chr12 24091569 24091816 -119694639 + L2 LINE L2 3005 3297 -16 1191 284 52 50 chr12 24092264 24092749 -119693706 + LTR33 LTR ERVL 31 516 -5 183 361 98 33 chr12 24092823 24092945 -119693510 - L2 LINE L2 -5 3267 3138 1649 183 70 23 chr12 24093644 24093988 -119692467 + MLT1A1 LTR MaLR 6 365 0 2146 138 43 0 chr12 24094337 24094686 -119691769 - THE1B LTR MaLR 0 364 1 184 299 0 103 chr12 24095313 24095410 -119691045 + L2 LINE L2 3227 3313 0 26 0 0 0 chr12 24095468 24095494 -119690961 + AT_rich Low_complexity Low_complexity 1 26 0 13727 105 19 2 chr12 24095532 24098389 -119688066 + L1PA8 LINE L1 3281 6171 -1 184 250 0 50 chr12 24098794 24098874 -119687581 + L2 LINE L2 3015 3090 -182 248 279 117 46 chr12 24099922 24100119 -119686336 + MIR SINE MIR 48 258 -4 369 296 78 9 chr12 24100958 24101073 -119685382 - L2 LINE L2 0 3272 3150 180 0 0 0 chr12 24101701 24101721 -119684734 + (A)n Simple_repeat Simple_repeat 1 20 0 2478 215 46 9 chr12 24101721 24102804 -119683651 + L1M4 LINE L1 4633 5760 -424 429 240 0 0 chr12 24102810 24102910 -119683545 - L1MB5 LINE L1 -289 5885 5786 2241 327 78 41 chr12 24102915 24104262 -119682193 - L2 LINE L2 -1241 2073 677 453 317 58 36 chr12 24104290 24104514 -119681941 - L2 LINE L2 -2886 428 200 3558 31 0 0 chr12 24106126 24106550 -119679905 - L1PA4 LINE L1 -1545 4601 4178 7476 28 6 0 chr12 24106550 24108120 -119678335 + L1PA4 LINE L1 4581 6151 -4 468 245 16 54 chr12 24108367 24108551 -119677904 - MER104 DNA MER2_type -1 179 3 272 416 72 0 chr12 24108578 24108703 -119677752 + L2 LINE L2 3139 3272 0 1515 239 65 2 chr12 24109042 24109489 -119676966 - Charlie1b DNA MER1_type -48 475 1 202 217 87 0 chr12 24109678 24109724 -119676731 + MIR SINE MIR 157 206 -56 826 276 119 33 chr12 24109863 24110284 -119676171 + L2 LINE L2 1920 2376 -938 268 290 81 97 chr12 24110273 24110708 -119675747 + L2 LINE L2 2818 3245 -68 * 218 331 74 16 chr12 24110711 24110832 -119675623 + L3b LINE CR1 1378 1505 -78 2452 53 3 0 chr12 24111939 24112240 -119674215 + AluY SINE Alu 1 302 -9 571 353 55 46 chr12 24113047 24113523 -119672932 - LTR67 LTR ERVL -16 541 62 337 221 11 63 chr12 24113572 24113667 -119672788 - Tigger5 DNA MER2_type 0 2323 2234 2109 109 3 3 chr12 24113802 24114118 -119672337 + AluSx SINE Alu 3 318 0 2002 102 41 10 chr12 24115367 24115660 -119670795 - AluSg SINE Alu -6 304 3 196 233 12 128 chr12 24115919 24116005 -119670450 + MIR SINE MIR 82 157 -105 437 277 25 0 chr12 24116678 24116797 -119669658 + MIR SINE MIR 99 220 -42 285 318 45 9 chr12 24116908 24116948 -119669507 + MER81 DNA DNA 1 38 -76 348 24 0 0 chr12 24116948 24116989 -119669466 + (TTA)n Simple_repeat Simple_repeat 2 42 0 285 318 45 9 chr12 24116989 24117058 -119669397 + MER81 DNA DNA 38 114 0 296 441 14 0 chr12 24117426 24117571 -119668884 + L2 LINE L2 3121 3267 -5 182 318 47 73 chr12 24117645 24117733 -119668722 - L2 LINE L2 -967 2347 2258 279 0 0 0 chr12 24117733 24117764 -119668691 + (TG)n Simple_repeat Simple_repeat 2 32 0 182 318 47 73 chr12 24117764 24117867 -119668588 - L2 LINE L2 -1056 2258 2161 3106 143 19 17 chr12 24117891 24118465 -119667990 - L1MC3 LINE L1 0 7785 7211 262 276 81 8 chr12 24119021 24119144 -119667311 - MLT1I LTR MaLR -17 392 261 405 258 0 0 chr12 24119150 24119247 -119667208 + MER99 DNA DNA 6 102 -726 657 227 0 0 chr12 24119391 24119545 -119666910 + L1MB7 LINE L1 6019 6172 -12 375 177 28 50 chr12 24119639 24119820 -119666635 + (TA)n Simple_repeat Simple_repeat 1 177 0 288 231 33 0 chr12 24119869 24119960 -119666495 + (TA)n Simple_repeat Simple_repeat 1 94 0 1127 180 72 14 chr12 24120444 24120666 -119665789 + MER46A DNA MER2_type 2 236 0 338 332 108 43 chr12 24120861 24121231 -119665224 - L1MEc LINE L1 -4387 2334 1941 250 257 14 0 chr12 24121246 24121320 -119665135 - L1M2 LINE L1 -4393 2456 2382 307 274 43 8 chr12 24121353 24121470 -119664985 - L1MEc LINE L1 -4815 1725 1605 226 128 0 21 chr12 24121580 24121627 -119664828 - L1MB7 LINE L1 -15 6169 6124 * 1534 162 14 3 chr12 24121618 24121902 -119664553 + L1MB3 LINE L1 5856 6142 -41 * 24078 137 11 15 chr12 24121901 24123138 -119663317 + L1PA8A LINE L1 2 1243 -5203 252 59 0 0 chr12 24123138 24123172 -119663283 + (CAA)n Simple_repeat Simple_repeat 3 36 0 24078 137 11 15 chr12 24123172 24128315 -119658140 + L1PA8A LINE L1 1243 6419 -27 2035 118 17 0 chr12 24128439 24128728 -119657727 - AluSx SINE Alu -18 294 1 269 221 26 13 chr12 24129350 24129427 -119657028 - MER103 DNA DNA -72 94 17 22 80 0 0 chr12 24129588 24129638 -119656817 + AT_rich Low_complexity Low_complexity 1 50 0 8201 171 13 27 chr12 24129739 24131965 -119654490 + L1PA15-16 LINE L1 1 2086 -4763 1956 145 26 19 chr12 24131965 24132275 -119654180 + AluSx SINE Alu 1 312 0 8201 171 13 27 chr12 24132275 24132477 -119653978 + L1PA15-16 LINE L1 2086 2289 -4560 3784 217 50 39 chr12 24132924 24134831 -119651624 + L1PA16 LINE L1 1266 3197 -3600 9664 162 38 8 chr12 24134832 24137944 -119648511 + L1MA2 LINE L1 3112 6304 0 10248 201 23 11 chr12 24137947 24141356 -119645099 + L1PA16 LINE L1 3180 6627 -190 610 118 9 9 chr12 24141358 24141468 -119644987 + L1PA16 LINE L1 6708 6817 0 362 348 50 0 chr12 24141577 24141738 -119644717 - MIR SINE MIR -26 236 68 484 220 21 71 chr12 24143153 24143294 -119643161 + MLT1B LTR MaLR 1 134 -240 201 162 0 0 chr12 24143454 24143491 -119642964 + A-rich Low_complexity Low_complexity 1 37 0 818 177 33 65 chr12 24143492 24143550 -119642905 + MLT1B LTR MaLR 167 225 -165 2247 131 120 5 chr12 24143550 24143933 -119642522 - MSTA LTR MaLR -1 427 1 818 177 33 65 chr12 24143933 24144089 -119642366 + MLT1B LTR MaLR 225 390 0 510 288 16 51 chr12 24144090 24144401 -119642054 - L1MD2 LINE L1 -252 5910 5609 462 235 127 58 chr12 24144426 24144686 -119641769 - MLT1J1 LTR MaLR -166 280 3 258 136 0 0 chr12 24144690 24144734 -119641721 + (TG)n Simple_repeat Simple_repeat 2 45 0 339 282 80 31 chr12 24144808 24145117 -119641338 - L1MD2 LINE L1 -748 5398 5159 1496 172 73 3 chr12 24145690 24145993 -119640462 - MER7A DNA MER2_type 0 346 25 1658 232 50 71 chr12 24147341 24147396 -119639059 - MLT1E LTR MaLR -11 582 527 1998 141 0 0 chr12 24147396 24147702 -119638753 + AluSx SINE Alu 1 306 0 1658 232 50 71 chr12 24147702 24147977 -119638478 - MLT1E LTR MaLR -66 527 266 3761 122 2 2 chr12 24147977 24148503 -119637952 + MER1A DNA MER1_type 2 527 0 1658 232 50 71 chr12 24148503 24148764 -119637691 - MLT1E LTR MaLR -327 266 1 2817 96 0 0 chr12 24148892 24149256 -119637199 + THE1B LTR MaLR 1 364 0 1669 174 6 39 chr12 24149420 24149731 -119636724 - AluJb SINE Alu -11 301 1 22 0 0 0 chr12 24150020 24150042 -119636413 + AT_rich Low_complexity Low_complexity 1 22 0 2573 62 0 0 chr12 24150361 24150665 -119635790 - AluY SINE Alu -7 304 1 821 279 40 4 chr12 24150700 24150947 -119635508 - MIR SINE MIR -1 261 6 2261 132 0 0 chr12 24151028 24151338 -119635117 - AluSx SINE Alu 0 312 3 2754 144 35 19 chr12 24151599 24152079 -119634376 + LTR45B LTR ERV1 2 489 0 23 54 0 0 chr12 24152967 24153004 -119633451 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 24153243 24153266 -119633189 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 219 0 chr12 24153481 24153604 -119632851 - MIR3 SINE MIR -43 165 16 231 206 68 0 chr12 24153943 24154016 -119632439 + L1ME LINE L1 5675 5752 -369 21 0 0 0 chr12 24154046 24154067 -119632388 + AT_rich Low_complexity Low_complexity 1 21 0 2148 113 31 0 chr12 24154226 24154519 -119631936 - AluSg1 SINE Alu -7 302 1 21 57 0 0 chr12 24154903 24154938 -119631517 + AT_rich Low_complexity Low_complexity 1 35 0 2266 254 3 54 chr12 24156084 24156785 -119629670 + LTR8 LTR ERV1 27 691 0 1134 184 63 5 chr12 24156810 24157016 -119629439 - AluJb SINE Alu -21 291 74 246 325 50 12 chr12 24157181 24157261 -119629194 - L2 LINE L2 -39 3233 3151 1845 146 0 20 chr12 24157261 24157556 -119628899 + AluJb SINE Alu 1 289 -23 257 301 43 43 chr12 24157807 24157900 -119628555 - MIR SINE MIR -150 112 20 911 168 22 6 chr12 24157919 24158098 -119628357 - L1PB2 LINE L1 -4 6147 5966 693 174 0 0 chr12 24158115 24158230 -119628225 - AluSg1 SINE Alu 0 309 195 550 167 10 0 chr12 24158230 24158326 -119628129 - AluSg1 SINE Alu -212 97 1 474 194 8 32 chr12 24158335 24158459 -119627996 - L1PB2 LINE L1 -185 5966 5846 875 97 0 0 chr12 24158560 24158674 -119627781 - AluSg/x SINE Alu -5 307 194 649 120 11 0 chr12 24158674 24158766 -119627689 - AluSg1 SINE Alu -216 93 1 3131 86 4 25 chr12 24158766 24159244 -119627211 - L1PB2 LINE L1 -176 5975 5508 280 276 66 72 chr12 24159399 24159580 -119626875 - MIR3 SINE MIR -14 194 15 2434 181 71 50 chr12 24160008 24160172 -119626283 - MER92B LTR ERV1 0 636 477 2221 124 0 0 chr12 24160172 24160470 -119625985 - AluSx SINE Alu -14 298 1 2434 181 71 50 chr12 24160470 24160928 -119625527 - MER92B LTR ERV1 -159 477 1 257 143 0 0 chr12 24162995 24163037 -119623418 - MER4D LTR ERV1 -586 286 245 5187 122 19 5 chr12 24163042 24163873 -119622582 + MER4D LTR ERV1 30 872 0 3337 72 0 18 chr12 24164131 24164587 -119621868 - LTR7 LTR ERV1 -2 448 1 1797 269 5 58 chr12 24164587 24164999 -119621456 - HERVH LTR ERV1 0 7713 7324 1232 133 0 60 chr12 24164999 24165233 -119621222 - HERVH LTR ERV1 -1894 5819 5600 2871 130 5 2 chr12 24165234 24165846 -119620609 - HERVH LTR ERV1 -2564 5149 4488 5244 116 17 0 chr12 24165848 24166688 -119619767 - HERVH LTR ERV1 -3720 3993 3140 * 15474 95 11 24 chr12 24166667 24169452 -119617003 - HERVH LTR ERV1 -4718 2995 1 3434 71 16 18 chr12 24169454 24169903 -119616552 - LTR7 LTR ERV1 -2 448 1 406 199 0 59 chr12 24169910 24170063 -119616392 + HsTC2 DNA Tc2 1 1856 -42 946 212 10 5 chr12 24170379 24170582 -119615873 + L1MB8 LINE L1 5970 6173 -5 1078 136 34 0 chr12 24170699 24170875 -119615580 + L1M1 LINE L1 6 187 -7378 2107 123 0 10 chr12 24171404 24171697 -119614758 + AluSx SINE Alu 1 290 -22 182 146 0 24 chr12 24172352 24172393 -119614062 + (GAAAA)n Simple_repeat Simple_repeat 1 40 0 561 122 33 0 chr12 24172404 24172494 -119613961 + MLT1B LTR MaLR 234 326 -64 520 321 144 23 chr12 24172799 24173145 -119613310 - L3 LINE CR1 -44 1533 1146 39937 39 0 0 chr12 24173984 24179513 -119606942 - L1PA4 LINE L1 -3 6152 623 800 82 0 0 chr12 24179511 24179609 -119606846 - L1PA4 LINE L1 -6048 98 1 * 1243 273 72 45 chr12 24179609 24180028 -119606427 - L1M4 LINE L1 -2934 3212 2806 1642 48 0 0 chr12 24180028 24180214 -119606241 - L1PA3 LINE L1 0 6155 5970 1243 273 72 45 chr12 24180214 24180283 -119606172 - L1M4 LINE L1 -3340 2806 2740 1856 139 11 7 chr12 24180283 24180589 -119605866 - AluSq SINE Alu 0 307 1 1243 273 72 45 chr12 24180589 24180967 -119605488 - L1M4 LINE L1 -3406 2740 2320 202 280 0 0 chr12 24231761 24231811 -119554644 + L2 LINE L2 3198 3247 -66 513 0 0 0 chr12 24232287 24232344 -119554111 + (GA)n Simple_repeat Simple_repeat 1 57 0 227 256 222 25 chr12 24233794 24233997 -119552458 + HAL1 LINE L1 2170 2412 -95 22 35 0 0 chr12 24234764 24234793 -119551662 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 24234981 24235002 -119551453 + AT_rich Low_complexity Low_complexity 1 21 0 184 255 59 0 chr12 24235077 24235128 -119551327 - L2 LINE L2 -4 3268 3215 212 333 160 0 chr12 24235888 24235963 -119550492 + L2 LINE L2 3201 3287 -26 404 268 128 0 chr12 24236711 24236875 -119549580 - Tigger3(Golem) DNA MER2_type 0 3037 2853 273 57 0 0 chr12 24238296 24238331 -119548124 + (TC)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 24238663 24238684 -119547771 + AT_rich Low_complexity Low_complexity 1 21 0 369 75 0 0 chr12 24238684 24238737 -119547718 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 97 0 0 chr12 24239374 24239405 -119547050 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 333 44 0 chr12 24239406 24239496 -119546959 + MIR SINE MIR 117 210 -52 515 298 79 17 chr12 24239775 24239953 -119546502 - L2 LINE L2 -243 3070 2882 819 287 121 17 chr12 24239962 24240317 -119546138 - L2 LINE L2 -610 2704 2313 293 54 0 0 chr12 24240319 24240356 -119546099 - THE1B LTR MaLR 0 364 328 423 353 40 6 chr12 24241543 24241716 -119544739 + MIR SINE MIR 20 198 -64 211 281 194 56 chr12 24241775 24241971 -119544484 + MIR SINE MIR 6 228 -34 1926 138 45 0 chr12 24242433 24242724 -119543731 - AluJo SINE Alu -8 304 1 1527 225 87 18 chr12 24242943 24243378 -119543077 + MLT1C LTR MaLR 1 465 -2 220 309 172 50 chr12 24243453 24243831 -119542624 + L2 LINE L2 2252 2675 -639 1805 157 3 13 chr12 24243876 24244176 -119542279 + AluJb SINE Alu 2 298 -14 410 238 119 0 chr12 24244311 24244437 -119542018 + MER103 DNA DNA 1 141 -25 758 168 15 0 chr12 24245466 24245597 -119540858 + AluJb SINE Alu 3 135 -177 1743 97 12 8 chr12 24245597 24245856 -119540599 + AluY SINE Alu 1 260 -51 420 37 0 0 chr12 24245897 24245951 -119540504 + (TA)n Simple_repeat Simple_repeat 2 55 0 698 186 12 78 chr12 24245970 24246156 -119540299 + AluJb SINE Alu 145 312 0 187 333 21 21 chr12 24246765 24246858 -119539597 + MIR3 SINE MIR 110 202 -6 185 360 100 26 chr12 24248178 24248517 -119537938 + L2 LINE L2 1716 2079 -1235 1004 263 59 17 chr12 24248561 24248850 -119537605 + MLT1F1 LTR MaLR 1 301 -266 21 57 0 0 chr12 24248850 24248885 -119537570 + AT_rich Low_complexity Low_complexity 1 35 0 362 188 0 0 chr12 24248885 24248954 -119537501 + MLT1F1 LTR MaLR 491 559 -8 293 139 0 0 chr12 24249020 24249063 -119537392 + MLT1F1 LTR MaLR 517 559 -8 295 346 79 20 chr12 24249143 24249397 -119537058 + L2 LINE L2 2148 2416 -898 307 306 39 50 chr12 24250724 24250904 -119535551 - MIR SINE MIR -70 192 15 2334 206 21 22 chr12 24252394 24252999 -119533456 + MLT2B3 LTR ERVL 1 520 0 24 32 0 0 chr12 24253614 24253645 -119532810 + AT_rich Low_complexity Low_complexity 1 31 0 270 267 0 99 chr12 24254310 24254411 -119532044 + MIR SINE MIR 37 128 -80 193 327 115 39 chr12 24255466 24255622 -119530833 - MIR SINE MIR -36 226 59 585 345 170 22 chr12 24256819 24257314 -119529141 + L2 LINE L2 1851 2418 -896 25 0 0 0 chr12 24257696 24257721 -119528734 + AT_rich Low_complexity Low_complexity 1 25 0 2385 76 0 3 chr12 24257726 24258028 -119528427 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 24258160 24258181 -119528274 + AT_rich Low_complexity Low_complexity 1 21 0 2100 129 0 13 chr12 24258223 24258540 -119527915 - AluSq SINE Alu 0 313 1 1231 247 87 78 chr12 24258618 24258840 -119527615 + L2 LINE L2 2475 2694 -619 1854 112 0 4 chr12 24258840 24259090 -119527365 + AluSg SINE Alu 35 283 -27 1231 247 87 78 chr12 24259090 24259688 -119526767 + L2 LINE L2 2694 3313 0 736 341 70 24 chr12 24261233 24261602 -119524853 + L2 LINE L2 2928 3313 0 305 336 126 8 chr12 24261606 24261844 -119524611 + L2 LINE L2 2182 2447 -867 243 0 0 0 chr12 24263675 24263688 -119522767 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 24263688 24263715 -119522740 + (CA)n Simple_repeat Simple_repeat 2 28 0 2090 108 7 19 chr12 24263729 24264036 -119522419 - AluSx SINE Alu -9 303 1 2172 120 10 0 chr12 24264377 24264685 -119521770 + AluY SINE Alu 1 311 0 790 152 129 29 chr12 24264819 24264990 -119521465 + MER5A DNA MER1_type 2 189 0 303 104 0 0 chr12 24265470 24265518 -119520937 + (CAAAG)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr12 24268424 24268460 -119517995 + AT_rich Low_complexity Low_complexity 1 36 0 270 56 0 0 chr12 24271260 24271296 -119515159 + (TG)n Simple_repeat Simple_repeat 2 37 0 1603 236 86 52 chr12 24272158 24272748 -119513707 + LTR9 LTR ERV1 1 610 -2 34 0 0 0 chr12 24273449 24273483 -119512972 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 24273683 24273711 -119512744 + AT_rich Low_complexity Low_complexity 1 28 0 223 355 130 0 chr12 24273789 24273927 -119512528 - MIR SINE MIR -60 202 47 22 35 0 0 chr12 24275651 24275680 -119510775 + AT_rich Low_complexity Low_complexity 1 29 0 2119 113 0 0 chr12 24276442 24276750 -119509705 + AluSx SINE Alu 1 308 0 250 240 0 0 chr12 24277477 24277527 -119508928 + GA-rich Low_complexity Low_complexity 1 50 0 243 294 49 92 chr12 24278152 24278336 -119508119 + L2 LINE L2 3089 3264 -8 26 0 0 0 chr12 24278419 24278445 -119508010 + AT_rich Low_complexity Low_complexity 1 26 0 739 346 114 18 chr12 24278582 24279084 -119507371 + L2 LINE L2 2762 3313 0 2410 65 13 3 chr12 24279249 24279555 -119506900 + AluY SINE Alu 1 309 -2 676 194 8 0 chr12 24279705 24279839 -119506616 + L1PB4 LINE L1 6022 6156 0 2515 61 0 3 chr12 24282296 24282607 -119503848 - AluY SINE Alu -1 310 1 291 54 0 0 chr12 24284431 24284468 -119501987 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr12 24284722 24284744 -119501711 + AT_rich Low_complexity Low_complexity 1 22 0 241 255 0 0 chr12 24286034 24286085 -119500370 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 263 49 24 0 chr12 24287053 24287094 -119499361 + (TA)n Simple_repeat Simple_repeat 2 43 0 203 147 0 0 chr12 24287819 24287853 -119498602 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 231 333 15 0 chr12 24287903 24287969 -119498486 + L2 LINE L2 3242 3308 -5 69 48 0 0 chr12 24289016 24289120 -119497335 + AT_rich Low_complexity Low_complexity 1 104 0 24 0 0 0 chr12 24289523 24289547 -119496908 + AT_rich Low_complexity Low_complexity 1 24 0 837 159 0 0 chr12 24291616 24291769 -119494686 + FLAM_C SINE Alu 2 154 0 21 36 0 0 chr12 24292219 24292247 -119494208 + AT_rich Low_complexity Low_complexity 1 28 0 2366 154 12 12 chr12 24292247 24292471 -119493984 - L1MA7 LINE L1 -270 6021 5795 357 24 0 0 chr12 24292471 24292513 -119493942 + (TG)n Simple_repeat Simple_repeat 2 43 0 2366 154 12 12 chr12 24292513 24292690 -119493765 - L1MA7 LINE L1 -495 5796 5620 23 0 0 0 chr12 24293032 24293055 -119493400 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr12 24293316 24293343 -119493112 + AT_rich Low_complexity Low_complexity 1 28 -20 428 126 115 0 chr12 24293343 24293430 -119493025 - L1MA4 LINE L1 -8 6292 6196 24 41 0 20 chr12 24293430 24293451 -119493004 + AT_rich Low_complexity Low_complexity 28 48 0 439 303 38 0 chr12 24294259 24294391 -119492064 - MER115 DNA AcHobo -27 666 530 3345 176 5 34 chr12 24294391 24295035 -119491420 + L1MB3 LINE L1 5420 6044 -139 541 248 23 0 chr12 24295035 24295164 -119491291 - MER115 DNA AcHobo -157 536 405 218 278 28 14 chr12 24295287 24295359 -119491096 - L2 LINE L2 -274 2998 2926 2176 203 73 32 chr12 24295548 24295918 -119490537 - L1MB7 LINE L1 -294 5890 5484 2178 110 0 7 chr12 24295918 24296218 -119490237 - AluSg SINE Alu -12 298 1 2176 203 73 32 chr12 24296218 24296448 -119490007 - L1MB7 LINE L1 -700 5484 5265 2453 124 14 11 chr12 24296457 24296893 -119489562 - L1PA13 LINE L1 -2 6161 5627 1705 148 13 34 chr12 24297966 24298264 -119488191 + AluJo SINE Alu 14 305 -7 203 258 45 0 chr12 24299799 24299865 -119486590 - MIR SINE MIR -128 134 66 222 167 42 0 chr12 24300142 24300190 -119486265 + (TTG)n Simple_repeat Simple_repeat 2 51 0 462 306 121 35 chr12 24300405 24300637 -119485818 - MIR SINE MIR -1 261 10 200 370 30 0 chr12 24301540 24301640 -119484815 - L2 LINE L2 -554 2760 2658 369 304 78 0 chr12 24302116 24302218 -119484237 - L2 LINE L2 0 3313 3204 1422 156 119 25 chr12 24302425 24302745 -119483710 + L1MB4 LINE L1 5831 6180 0 510 208 16 8 chr12 24304921 24305046 -119481409 + L1MB3 LINE L1 5343 5468 -703 2928 186 5 3 chr12 24305060 24305642 -119480813 + L1MB3 LINE L1 5601 6183 0 22 35 0 0 chr12 24305684 24305713 -119480742 + AT_rich Low_complexity Low_complexity 1 29 0 258 266 211 9 chr12 24305964 24306073 -119480382 + L1ME1 LINE L1 6011 6141 -25 2241 93 3 0 chr12 24306873 24307175 -119479280 - AluSg SINE Alu -7 303 1 186 224 0 0 chr12 24307345 24307394 -119479061 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr12 24307940 24307961 -119478494 + AT_rich Low_complexity Low_complexity 1 21 0 227 299 14 36 chr12 24307985 24308103 -119478352 - MIR SINE MIR -66 142 50 758 117 70 0 chr12 24308108 24308236 -119478219 + MER85 DNA T2_type 2 138 -1 426 328 24 0 chr12 24308834 24309014 -119477441 - MIR SINE MIR -41 221 37 24 0 0 0 chr12 24310069 24310093 -119476362 + AT_rich Low_complexity Low_complexity 1 24 0 233 303 0 53 chr12 24310708 24310784 -119475671 + MIR3 SINE MIR 99 170 -38 21 36 0 0 chr12 24311354 24311382 -119475073 + AT_rich Low_complexity Low_complexity 1 28 0 753 244 94 5 chr12 24311910 24312111 -119474344 - MIR SINE MIR -42 220 2 21 36 0 0 chr12 24314190 24314218 -119472237 + AT_rich Low_complexity Low_complexity 1 28 0 218 214 0 0 chr12 24314879 24314921 -119471534 + GA-rich Low_complexity Low_complexity 3 44 0 970 307 66 39 chr12 24315406 24315843 -119470612 - L2 LINE L2 -2 3311 2863 383 333 71 85 chr12 24316199 24316565 -119469890 - L2 LINE L2 0 3272 2912 486 329 55 79 chr12 24316575 24316635 -119469820 - L2 LINE L2 -559 2755 2695 2438 44 0 25 chr12 24316635 24316956 -119469499 + L1PA5 LINE L1 5841 6153 -1 486 329 55 79 chr12 24316956 24317403 -119469052 - L2 LINE L2 -619 2695 2260 22 0 0 0 chr12 24317429 24317451 -119469004 + AT_rich Low_complexity Low_complexity 1 22 0 232 338 48 14 chr12 24318162 24318307 -119468148 + MIR SINE MIR 111 260 -2 26 64 0 0 chr12 24320471 24320518 -119465937 + AT_rich Low_complexity Low_complexity 1 47 0 201 161 0 0 chr12 24322456 24322487 -119463968 + (CA)n Simple_repeat Simple_repeat 2 32 0 308 286 13 0 chr12 24323178 24323255 -119463200 - L2 LINE L2 -7 3265 3188 245 286 51 20 chr12 24323263 24323361 -119463094 + MER69A DNA AcHobo 1 101 -76 * 357 172 121 121 chr12 24323343 24323541 -119462914 + MER69 DNA AcHobo 2328 2525 -1 1317 330 126 46 chr12 24323550 24324076 -119462379 - L2 LINE L2 -99 3173 2691 2782 3 0 0 chr12 24324076 24324379 -119462076 + AluYa5 SINE Alu 1 303 -8 1317 330 126 46 chr12 24324379 24325133 -119461322 - L2 LINE L2 -581 2691 1791 361 281 34 0 chr12 24325139 24325228 -119461227 + MER5A DNA MER1_type 7 98 -91 1076 274 160 13 chr12 24325229 24325705 -119460750 + MLT1F1 LTR MaLR 5 543 -24 195 322 17 0 chr12 24325732 24325791 -119460664 + MER5A DNA MER1_type 124 183 -6 368 224 0 12 chr12 24325881 24325966 -119460489 - L2 LINE L2 -1625 1689 1606 10815 161 30 30 chr12 24327106 24327433 -119459022 - Tigger1 DNA MER2_type 0 2418 2093 1595 195 26 0 chr12 24327433 24327735 -119458720 - AluJo SINE Alu 0 312 3 10815 161 30 30 chr12 24327735 24329342 -119457113 - Tigger1 DNA MER2_type -325 2093 483 1685 156 28 7 chr12 24329350 24329638 -119456817 - Tigger1 DNA MER2_type -2123 295 2 1617 221 8 28 chr12 24329677 24330075 -119456380 + MLT1B LTR MaLR 1 390 0 260 384 30 44 chr12 24332067 24332270 -119454185 - L2 LINE L2 -528 2786 2587 290 204 32 65 chr12 24332478 24332498 -119453957 - MIR SINE MIR -39 223 204 258 105 0 0 chr12 24332498 24332536 -119453919 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 290 204 32 65 chr12 24332536 24332608 -119453847 - MIR SINE MIR -58 204 134 182 194 0 0 chr12 24333055 24333086 -119453369 + L2 LINE L2 3263 3293 -20 558 325 106 58 chr12 24333380 24334033 -119452422 + L2 LINE L2 1831 2514 -800 719 89 18 0 chr12 24334270 24334382 -119452073 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 1625 177 136 3 chr12 24334809 24335125 -119451330 - MLT1A1 LTR MaLR -7 358 1 471 286 48 0 chr12 24335132 24335258 -119451197 + L2 LINE L2 3141 3272 0 27 0 0 0 chr12 24336261 24336288 -119450167 + AT_rich Low_complexity Low_complexity 1 27 0 244 326 49 36 chr12 24337297 24337474 -119448981 - MIR SINE MIR -61 201 32 308 242 30 85 chr12 24337729 24337894 -119448561 + L1ME4a LINE L1 5681 5836 -1972 234 278 52 17 chr12 24338049 24338164 -119448291 + L1ME4a LINE L1 5914 6032 -89 344 273 120 42 chr12 24338438 24338654 -119447801 + MLT1J LTR MaLR 279 511 0 2158 110 7 7 chr12 24339905 24340215 -119446240 + AluSx SINE Alu 1 310 -2 1897 126 48 0 chr12 24340985 24341279 -119445176 + AluSx SINE Alu 1 308 -4 273 313 75 55 chr12 24341575 24341776 -119444679 - MIR SINE MIR -37 225 21 419 272 24 16 chr12 24342040 24342165 -119444290 - MER119 DNA MER1_type 0 583 458 522 267 92 0 chr12 24342172 24342292 -119444163 - MER119 DNA MER1_type -452 131 1 216 158 0 0 chr12 24343427 24343465 -119442990 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 24344039 24344067 -119442388 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr12 24345063 24345148 -119441307 + AT_rich Low_complexity Low_complexity 1 85 0 192 40 0 0 chr12 24346041 24346066 -119440389 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 408 351 28 24 chr12 24347114 24347325 -119439130 - L3 LINE CR1 -129 1448 1237 270 305 91 64 chr12 24347339 24347526 -119438929 - MIR3 SINE MIR 0 208 17 245 358 183 12 chr12 24347586 24347826 -119438629 - L3 LINE CR1 -422 1155 875 385 297 7 35 chr12 24347966 24348111 -119438344 - L2 LINE L2 -15 3298 3158 230 267 33 11 chr12 24348360 24348450 -119438005 + GA-rich Low_complexity Low_complexity 1 92 0 271 360 43 12 chr12 24348798 24348959 -119437496 - MIR3 SINE MIR -12 196 31 582 221 39 0 chr12 24349200 24349327 -119437128 - MER82 DNA MER2_type -2 651 520 * 1937 208 16 3 chr12 24349325 24349704 -119436751 - MER82 DNA MER2_type -269 384 1 300 313 83 71 chr12 24350342 24350668 -119435787 - L2 LINE L2 -4 3268 2939 187 338 99 49 chr12 24351384 24352061 -119434394 - L2 LINE L2 -1268 2046 1336 206 121 0 0 chr12 24353358 24353391 -119433064 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 24354961 24354982 -119431473 + AT_rich Low_complexity Low_complexity 1 21 0 899 147 35 6 chr12 24355054 24355224 -119431231 + L1MB7 LINE L1 5991 6165 -19 242 295 13 83 chr12 24355337 24355493 -119430962 - MIR SINE MIR -40 222 78 2252 100 0 0 chr12 24355629 24355930 -119430525 - AluSq SINE Alu -12 301 1 1368 168 42 23 chr12 24356670 24356979 -119429476 + L1 LINE L1 4819 5133 -1013 1140 179 49 0 chr12 24356976 24357199 -119429256 + L1MA9 LINE L1 6040 6273 -39 * 259 309 0 0 chr12 24357353 24357421 -119429034 - L2 LINE L2 -19 3294 3227 288 365 141 6 chr12 24357676 24357846 -119428609 + L2 LINE L2 3075 3267 -5 554 269 134 6 chr12 24359617 24359788 -119426667 - MIR SINE MIR -62 200 8 26 0 0 0 chr12 24359835 24359861 -119426594 + AT_rich Low_complexity Low_complexity 1 26 0 423 302 81 0 chr12 24360360 24360509 -119425946 - L2 LINE L2 -4 3309 3149 975 277 50 70 chr12 24360523 24360992 -119425463 + L1MEd LINE L1 564 1014 -5191 2082 142 0 0 chr12 24360992 24361302 -119425153 + AluJo SINE Alu 1 310 -2 975 277 50 70 chr12 24361302 24361589 -119424866 + L1MEd LINE L1 1014 1305 -4900 505 244 113 50 chr12 24362243 24362603 -119423852 + L1MEd LINE L1 2117 2460 -3755 24 67 0 0 chr12 24362735 24362780 -119423675 + AT_rich Low_complexity Low_complexity 1 45 0 716 309 29 3 chr12 24362812 24363158 -119423297 + L1MEd LINE L1 2479 2833 -3382 21 0 0 0 chr12 24364384 24364405 -119422050 + AT_rich Low_complexity Low_complexity 1 21 0 260 228 13 25 chr12 24366254 24366333 -119420122 + CT-rich Low_complexity Low_complexity 2 79 0 267 330 52 17 chr12 24369856 24369971 -119416484 + L2 LINE L2 3190 3308 -5 364 277 138 25 chr12 24369974 24370133 -119416322 - L3b LINE CR1 -96 1487 1311 183 297 109 0 chr12 24371159 24371223 -119415232 + L2 LINE L2 2990 3060 -212 214 372 83 42 chr12 24371781 24372117 -119414338 + L2 LINE L2 2828 3177 -95 578 288 81 77 chr12 24372432 24373225 -119413230 - L1MEd LINE L1 -2476 3653 2845 2065 118 0 13 chr12 24373225 24373529 -119412926 + AluSx SINE Alu 1 300 -12 578 288 81 77 chr12 24373529 24374196 -119412259 - L1MEd LINE L1 -3284 2845 2183 1877 151 0 3 chr12 24374213 24374498 -119411957 - AluSx SINE Alu -28 284 1 638 274 65 21 chr12 24375226 24375601 -119410854 - L1MEd LINE L1 -4903 1216 960 592 261 134 25 chr12 24375636 24375912 -119410543 - L1ME1 LINE L1 -12 6221 5913 1891 163 3 3 chr12 24375913 24376208 -119410247 + AluJb SINE Alu 3 297 -15 741 211 127 9 chr12 24376208 24376421 -119410034 - L1ME1 LINE L1 -1291 4924 4687 * 4377 243 80 48 chr12 24376420 24376734 -119409721 - L1ME1 LINE L1 -2022 4193 3891 2629 52 0 0 chr12 24376734 24377043 -119409412 + AluY SINE Alu 1 309 -2 4377 243 80 48 chr12 24377043 24378631 -119407824 - L1ME1 LINE L1 -2324 3891 2258 1662 190 0 0 chr12 24378631 24378921 -119407534 - AluSx SINE Alu -18 294 5 4377 243 80 48 chr12 24378921 24379228 -119407227 - L1ME1 LINE L1 -3957 2258 1962 315 264 187 33 chr12 24379240 24379422 -119407033 - L1ME1 LINE L1 -4919 1477 1268 1871 261 155 45 chr12 24379426 24380488 -119405967 - L1ME1 LINE L1 -5180 1216 38 562 272 41 72 chr12 24380974 24381238 -119405217 + MLT1I LTR MaLR 63 304 -105 21 0 0 0 chr12 24381916 24381937 -119404518 + AT_rich Low_complexity Low_complexity 1 21 0 255 174 0 29 chr12 24381970 24382039 -119404416 - L1MC4 LINE L1 -1336 6706 6640 23 0 0 0 chr12 24382241 24382264 -119404191 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24382426 24382447 -119404008 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 24383826 24383847 -119402608 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 33 0 0 chr12 24384802 24384832 -119401623 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 185 0 0 chr12 24385744 24385798 -119400657 - LTR66 LTR ERVL -163 447 394 219 69 0 0 chr12 24386555 24386584 -119399871 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 390 92 29 chr12 24389375 24389895 -119396560 - L2 LINE L2 -340 2974 2422 1672 173 0 19 chr12 24390164 24390477 -119395978 - AluJo SINE Alu -3 309 3 222 139 23 0 chr12 24391177 24391220 -119395235 + (CA)n Simple_repeat Simple_repeat 2 45 0 6050 39 0 0 chr12 24391320 24392047 -119394408 - L1PA5 LINE L1 -5 6149 5423 387 318 142 14 chr12 24392957 24393168 -119393287 - MIR SINE MIR -5 257 20 289 311 53 30 chr12 24393625 24393757 -119392698 - MIR SINE MIR -105 157 23 1627 209 36 47 chr12 24394013 24394483 -119391972 + MLT1C LTR MaLR 1 465 -2 222 91 0 0 chr12 24394722 24394755 -119391700 + (TG)n Simple_repeat Simple_repeat 2 34 0 313 141 28 0 chr12 24394771 24394842 -119391613 + (TA)n Simple_repeat Simple_repeat 2 74 0 2001 143 7 0 chr12 24394885 24395185 -119391270 + AluSx SINE Alu 1 302 -10 1916 147 7 0 chr12 24395415 24395721 -119390734 + AluSx SINE Alu 1 308 -4 1858 67 25 0 chr12 24396129 24396395 -119390060 + AluY SINE Alu 38 309 0 216 0 0 0 chr12 24396884 24396908 -119389547 + (A)n Simple_repeat Simple_repeat 1 24 0 266 272 84 73 chr12 24397739 24397930 -119388525 - MIR SINE MIR -30 232 40 22 0 0 0 chr12 24399297 24399319 -119387136 + AT_rich Low_complexity Low_complexity 1 22 0 1583 142 6 107 chr12 24400536 24400882 -119385573 + AluJo SINE Alu 2 312 0 289 318 132 16 chr12 24402000 24402129 -119384326 + MIR3 SINE MIR 34 177 -31 2286 78 3 0 chr12 24402145 24402456 -119383999 - AluSp SINE Alu 0 312 1 24 53 0 0 chr12 24503593 24503631 -119282824 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr12 24504688 24504709 -119281746 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 24504793 24504818 -119281637 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 24505761 24505795 -119280660 + (TA)n Simple_repeat Simple_repeat 2 35 0 1426 167 115 15 chr12 24506045 24506216 -119280239 - AluJo SINE Alu 0 312 160 261 0 0 0 chr12 24506216 24506245 -119280210 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 644 82 0 10 chr12 24506245 24506342 -119280113 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 1426 167 115 15 chr12 24506342 24506438 -119280017 - AluJo SINE Alu -151 161 17 3649 246 47 29 chr12 24507524 24508671 -119277784 - L1MEc LINE L1 -2685 3530 2388 1497 192 7 36 chr12 24508671 24508973 -119277482 + AluJb SINE Alu 1 293 -19 3649 246 47 29 chr12 24508973 24509344 -119277111 - L1MEc LINE L1 -3827 2388 2025 883 180 21 31 chr12 24509349 24509543 -119276912 - AluJb SINE Alu 0 312 121 255 270 110 0 chr12 24510683 24510783 -119275672 - HAL1b LINE L1 -419 929 819 24 0 0 0 chr12 24510799 24510823 -119275632 + AT_rich Low_complexity Low_complexity 1 24 0 2083 135 0 0 chr12 24510910 24511214 -119275241 - AluSx SINE Alu -8 304 1 541 290 0 12 chr12 24511391 24511560 -119274895 - FRAM SINE Alu 0 176 10 198 103 0 0 chr12 24511564 24511593 -119274862 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 207 0 0 0 chr12 24512246 24512269 -119274186 + (A)n Simple_repeat Simple_repeat 1 23 0 186 156 0 0 chr12 24512487 24512532 -119273923 + T-rich Low_complexity Low_complexity 1 45 0 1988 133 0 40 chr12 24512595 24512919 -119273536 + AluJo SINE Alu 1 311 -1 189 0 0 0 chr12 24514315 24514336 -119272119 + (T)n Simple_repeat Simple_repeat 1 21 0 6804 231 69 38 chr12 24515189 24516972 -119269483 + L1ME2 LINE L1 2936 4662 -1500 2130 107 45 0 chr12 24516972 24517262 -119269193 + AluSg SINE Alu 1 303 -7 6804 231 69 38 chr12 24517262 24517325 -119269130 + L1ME2 LINE L1 4662 4722 -1440 1229 186 0 128 chr12 24517325 24517669 -119268786 + AluJo SINE Alu 1 300 -2 6804 231 69 38 chr12 24517669 24518910 -119267545 + L1ME2 LINE L1 4722 6155 -7 261 346 30 38 chr12 24518950 24519083 -119267372 + L2 LINE L2 3136 3267 -5 493 380 69 20 chr12 24519100 24519637 -119266818 - L2 LINE L2 -917 2397 1835 192 40 0 0 chr12 24520325 24520350 -119266105 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr12 24520614 24520645 -119265810 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 182 37 37 0 chr12 24521408 24521435 -119265020 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr12 24521596 24521620 -119264835 + AT_rich Low_complexity Low_complexity 1 24 0 969 166 132 31 chr12 24522292 24522581 -119263874 - MER33 DNA MER1_type -6 318 1 305 225 0 38 chr12 24523149 24523229 -119263226 + MIR3 SINE MIR 125 201 -7 204 180 16 49 chr12 24523510 24523571 -119262884 + A-rich Low_complexity Low_complexity 1 59 0 378 304 44 150 chr12 24523756 24524256 -119262199 - L2 LINE L2 -1 3271 2825 839 94 86 0 chr12 24524553 24524681 -119261774 + MER85 DNA T2_type 1 139 0 754 207 36 47 chr12 24524877 24525070 -119261385 - AluJo SINE Alu -2 310 120 1601 220 72 37 chr12 24525344 24525830 -119260625 - MLT1D LTR MaLR 0 505 3 886 335 121 19 chr12 24526714 24527156 -119259299 - L2 LINE L2 -8 3305 2909 1663 188 0 0 chr12 24527156 24527449 -119259006 + AluJo SINE Alu 1 293 -19 886 335 121 19 chr12 24527449 24527909 -119258546 - L2 LINE L2 -404 2909 2310 1393 174 3 68 chr12 24528737 24529030 -119257425 + AluSx SINE Alu 1 274 -38 216 0 0 0 chr12 24529035 24529059 -119257396 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1568 210 41 25 chr12 24529171 24529538 -119256917 + MLT1A2 LTR MaLR 2 374 0 284 286 26 0 chr12 24529690 24529767 -119256688 + GA-rich Low_complexity Low_complexity 4 82 0 321 330 96 42 chr12 24529810 24530122 -119256333 + L2 LINE L2 2598 2926 -388 243 248 58 107 chr12 24530357 24530478 -119255977 + L2 LINE L2 3155 3269 -3 1318 155 4 39 chr12 24530717 24530949 -119255506 + AluJo SINE Alu 1 224 -88 454 250 28 9 chr12 24530992 24531100 -119255355 - MER46C DNA MER2_type -79 259 150 1764 154 3 46 chr12 24533386 24533509 -119252946 + AluJb SINE Alu 1 128 -184 678 47 0 0 chr12 24533509 24533595 -119252860 + (TATG)n Simple_repeat Simple_repeat 2 87 0 1764 154 3 46 chr12 24533595 24533795 -119252660 + AluJb SINE Alu 128 310 -2 214 274 0 0 chr12 24534065 24534127 -119252328 + (TA)n Simple_repeat Simple_repeat 2 63 0 1550 189 11 14 chr12 24535061 24535342 -119251113 + AluJo SINE Alu 5 284 -28 3484 183 61 25 chr12 24535877 24536631 -119249824 + L1MB5 LINE L1 5385 6165 -9 568 295 62 13 chr12 24536650 24536874 -119249581 + L1MEc LINE L1 -563 4294966967 -6613 233 330 11 11 chr12 24536955 24537046 -119249409 + L1MEc LINE L1 178 268 -6016 * 357 321 92 48 chr12 24537042 24537413 -119249042 + L1MEc LINE L1 223 609 -5671 1994 240 56 56 chr12 24537494 24538167 -119248288 + L1MEc LINE L1 619 1292 -5092 2156 109 3 10 chr12 24538167 24538470 -119247985 + AluSg1 SINE Alu 1 301 -8 1994 240 56 56 chr12 24538470 24538784 -119247671 + L1MEc LINE L1 1291 1604 -4780 333 0 0 0 chr12 24538785 24538822 -119247633 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 172 25 20 chr12 24538847 24539255 -119247200 + L1MA9 LINE L1 5896 6305 -7 747 275 78 58 chr12 24539361 24539706 -119246749 + L1MEc LINE L1 1577 2079 -4484 225 188 62 12 chr12 24539715 24539795 -119246660 + (TA)n Simple_repeat Simple_repeat 1 84 0 902 254 75 69 chr12 24539833 24540510 -119245945 + L1MEc LINE L1 1898 2578 -3985 842 190 58 116 chr12 24540536 24540751 -119245704 + L1MEc LINE L1 2813 2998 -3384 1533 200 4 7 chr12 24540751 24541026 -119245429 - AluJb SINE Alu -28 284 11 842 190 58 116 chr12 24541026 24541189 -119245266 + L1MEc LINE L1 2998 3169 -3213 575 205 116 0 chr12 24541193 24541305 -119245150 + FLAM_C SINE Alu 1 125 -18 828 217 0 33 chr12 24541464 24541644 -119244811 + FRAM SINE Alu 3 176 0 6759 218 50 55 chr12 24541656 24544909 -119241546 + L1MB8 LINE L1 3013 6241 -6 294 340 42 56 chr12 24545098 24545242 -119241213 + L2 LINE L2 2916 3057 -256 227 206 48 48 chr12 24545328 24545391 -119241064 + L2 LINE L2 3251 3313 0 2187 91 3 0 chr12 24546500 24546786 -119239669 + AluSx SINE Alu 5 291 -21 807 161 0 0 chr12 24546792 24546972 -119239483 + (TA)n Simple_repeat Simple_repeat 1 180 0 699 195 0 0 chr12 24546986 24547264 -119239191 + (TA)n Simple_repeat Simple_repeat 1 278 0 324 70 0 0 chr12 24547257 24547300 -119239155 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 1193 232 64 90 chr12 24548242 24548789 -119237666 + MLT1F LTR MaLR 2 534 -8 194 372 66 15 chr12 24548803 24548940 -119237515 + MIR3 SINE MIR 14 157 -51 372 258 46 66 chr12 24549684 24549835 -119236620 + L2 LINE L2 3166 3313 0 1892 155 0 13 chr12 24550129 24550432 -119236023 + AluSx SINE Alu 1 299 -13 206 225 0 0 chr12 24550734 24550774 -119235681 + (CA)n Simple_repeat Simple_repeat 1 40 0 408 111 0 0 chr12 24554537 24554600 -119231855 + (TC)n Simple_repeat Simple_repeat 2 64 0 2043 115 10 14 chr12 24556799 24557138 -119229317 + AluSx SINE Alu 7 312 0 1985 150 0 6 chr12 24557990 24558303 -119228152 + AluSx SINE Alu 1 311 -1 1334 193 36 18 chr12 24558465 24558745 -119227710 - AluJb SINE Alu -23 289 5 232 322 0 0 chr12 24558904 24558963 -119227492 - L3 LINE CR1 -1 1576 1518 624 245 0 34 chr12 24561465 24561612 -119224843 - L2 LINE L2 -2 3311 3170 321 269 0 0 chr12 24563308 24563375 -119223080 - L2 LINE L2 -52 3261 3195 844 164 0 27 chr12 24565945 24566091 -119220364 + FLAM_C SINE Alu 1 142 -1 271 263 247 10 chr12 24566656 24566850 -119219605 + L2 LINE L2 2093 2332 -982 347 262 47 19 chr12 24567718 24567825 -119218630 + L2 LINE L2 3163 3272 0 21 36 0 0 chr12 24568742 24568770 -119217685 + AT_rich Low_complexity Low_complexity 1 28 0 1387 248 0 0 chr12 24568770 24569052 -119217403 - AluJo SINE Alu -30 282 1 852 294 24 0 chr12 24569388 24569636 -119216819 - MIR SINE MIR -5 257 4 4226 152 26 17 chr12 24569701 24571049 -119215406 + L1MA8 LINE L1 4668 6028 -263 216 294 76 43 chr12 24579328 24579420 -119207035 - L2 LINE L2 0 3272 3178 28 71 0 0 chr12 24579499 24579555 -119206900 + AT_rich Low_complexity Low_complexity 1 56 0 265 316 25 0 chr12 24579752 24579831 -119206624 + MIR SINE MIR 63 143 -119 2332 73 0 3 chr12 24580093 24580396 -119206059 + AluY SINE Alu 1 302 -9 257 339 9 18 chr12 24583443 24583552 -119202903 + MIR SINE MIR 155 262 0 232 246 0 53 chr12 24584286 24584343 -119202112 + L2 LINE L2 3219 3272 0 836 309 20 4 chr12 24584616 24584862 -119201593 + MIR SINE MIR 3 252 -10 1270 153 9 9 chr12 24584886 24585101 -119201354 - AluJb SINE Alu -97 215 1 2161 89 0 41 chr12 24586175 24586489 -119199966 - AluSq SINE Alu -12 301 1 489 362 24 14 chr12 24587587 24587794 -119198661 - MIR SINE MIR -6 256 48 2720 183 0 56 chr12 24587934 24588562 -119197893 + L1MB8 LINE L1 5586 6178 0 288 0 0 0 chr12 24589142 24589174 -119197281 + (T)n Simple_repeat Simple_repeat 1 32 0 201 175 0 0 chr12 24589586 24589626 -119196829 + A-rich Low_complexity Low_complexity 1 40 0 262 288 160 0 chr12 24590203 24590328 -119196127 + MIR SINE MIR 106 250 -12 229 259 18 54 chr12 24590934 24591046 -119195409 + L1 LINE L1 3730 3837 -2309 529 317 75 46 chr12 24591250 24591688 -119194767 + L2 LINE L2 1707 2157 -1157 23 33 0 0 chr12 24591907 24591937 -119194518 + AT_rich Low_complexity Low_complexity 1 30 0 319 70 0 0 chr12 24592689 24592732 -119193723 - AluSq SINE Alu -8 293 251 1451 91 0 10 chr12 24592732 24592931 -119193524 - AluSq SINE Alu -116 197 1 608 347 36 5 chr12 24593293 24593515 -119192940 - MIR SINE MIR -14 248 20 2776 6 0 10 chr12 24596195 24596509 -119189946 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr12 24596953 24596982 -119189473 + AT_rich Low_complexity Low_complexity 1 29 0 180 77 0 0 chr12 24598291 24598317 -119188138 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 893 272 20 16 chr12 24599636 24599882 -119186573 - MIR SINE MIR -1 261 15 881 281 117 32 chr12 24600124 24600526 -119185929 + MLT1K LTR MaLR 142 577 -11 321 299 52 0 chr12 24602747 24602844 -119183611 + L2 LINE L2 3170 3271 -1 315 184 153 52 chr12 24603248 24603372 -119183083 + MIR SINE MIR 3 139 -69 182 323 86 54 chr12 24603716 24603809 -119182646 + MER5A DNA MER1_type 3 98 -91 26 30 0 0 chr12 24604059 24604092 -119182363 + AT_rich Low_complexity Low_complexity 1 33 0 352 243 62 42 chr12 24604127 24604271 -119182184 + L2 LINE L2 3165 3311 -2 2380 97 0 0 chr12 24604868 24605177 -119181278 + AluSc SINE Alu 1 309 0 187 250 83 0 chr12 24605907 24605955 -119180500 + MIR SINE MIR 202 253 -9 2276 76 3 3 chr12 24607364 24607668 -119178787 + AluSx SINE Alu 1 304 -8 315 314 126 0 chr12 24608499 24608658 -119177797 - MIR SINE MIR -2 260 82 2366 74 10 3 chr12 24608677 24608986 -119177469 - AluY SINE Alu 0 311 1 595 330 44 6 chr12 24609153 24609335 -119177120 - MIR3 SINE MIR -5 203 15 279 335 67 18 chr12 24609761 24609925 -119176530 - MIR3 SINE MIR -35 173 2 244 169 0 68 chr12 24611253 24611312 -119175143 + Alu SINE Alu 236 290 -10 198 0 0 0 chr12 24611885 24611907 -119174548 + (A)n Simple_repeat Simple_repeat 1 22 0 1720 167 0 43 chr12 24612234 24612558 -119173897 + AluJo SINE Alu 1 310 -2 277 331 50 44 chr12 24613547 24613728 -119172727 - L2 LINE L2 -508 2806 2625 21 0 0 0 chr12 24614263 24614284 -119172171 + AT_rich Low_complexity Low_complexity 1 21 0 273 260 13 26 chr12 24614302 24614379 -119172076 - MIR SINE MIR -56 152 77 23 33 0 0 chr12 24614572 24614602 -119171853 + AT_rich Low_complexity Low_complexity 1 30 0 320 343 114 0 chr12 24618573 24618713 -119167742 - L2 LINE L2 -3 3269 3114 267 340 47 52 chr12 24620209 24620400 -119166055 - MER91A DNA MER1_type -4 192 3 359 314 149 21 chr12 24620401 24620589 -119165866 - MIR SINE MIR -34 228 17 21 71 0 0 chr12 24620630 24620672 -119165783 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 24622137 24622165 -119164290 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 24624641 24624678 -119161777 + AT_rich Low_complexity Low_complexity 1 37 0 1349 110 0 0 chr12 24626532 24626705 -119159750 - AluSg/x SINE Alu -11 299 127 354 326 70 0 chr12 24627065 24627194 -119159261 - L3 LINE CR1 -105 1472 1335 255 232 132 114 chr12 24627884 24628104 -119158351 + MLT1H LTR MaLR 97 320 -229 246 241 23 35 chr12 24628157 24628244 -119158211 + MLT1H LTR MaLR 464 549 0 2489 64 0 6 chr12 24628342 24628655 -119157800 + AluY SINE Alu 1 311 0 650 271 76 36 chr12 24628835 24629042 -119157413 - L1ME LINE L1 -509 5655 5421 2346 101 0 0 chr12 24629042 24629348 -119157107 - AluSq SINE Alu -6 307 2 650 271 76 36 chr12 24629348 24629514 -119156941 - L1ME LINE L1 -743 5421 5263 615 305 57 22 chr12 24629646 24630053 -119156402 - L1ME LINE L1 -1050 5096 4676 252 238 60 0 chr12 24630158 24630193 -119156262 - HERVS71 LTR ERV1 -8436 542 511 351 0 0 0 chr12 24630193 24630232 -119156223 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 238 60 0 chr12 24630232 24630280 -119156175 - HERVS71 LTR ERV1 -8467 511 454 387 0 0 0 chr12 24630523 24630566 -119155889 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2339 124 13 24 chr12 24630725 24631104 -119155351 + THE1C LTR MaLR 1 375 0 1104 94 0 0 chr12 24631227 24631376 -119155079 - L1PA7 LINE L1 -7 6147 5999 2223 202 20 22 chr12 24631386 24631890 -119154565 - L1MB4 LINE L1 -1 6179 5677 1978 214 36 22 chr12 24631906 24632718 -119153737 - L1M4 LINE L1 -453 5731 4909 928 299 100 27 chr12 24634367 24634768 -119151687 - LTR16A LTR ERVL 0 450 21 412 274 52 30 chr12 24634949 24635084 -119151371 + MIR3 SINE MIR 61 198 -10 2036 299 120 34 chr12 24635168 24636709 -119149746 + L2 LINE L2 1580 3313 0 1537 183 0 8 chr12 24638457 24638720 -119147735 - AluJo SINE Alu -13 299 39 21 0 0 0 chr12 24639160 24639181 -119147274 + AT_rich Low_complexity Low_complexity 1 21 0 2101 125 0 0 chr12 24640361 24640642 -119145813 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr12 24640643 24640666 -119145789 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 686 242 29 46 chr12 24641075 24641381 -119145074 + L1M4 LINE L1 5041 5341 -805 1982 120 3 3 chr12 24641611 24641944 -119144511 + AluSx SINE Alu 1 333 0 192 316 82 10 chr12 24642012 24642110 -119144345 + L3b LINE CR1 1286 1390 -193 189 0 0 0 chr12 24642639 24642660 -119143795 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 280 222 48 0 chr12 24645080 24645143 -119141312 - MSTD LTR MaLR -330 66 1 2155 105 0 49 chr12 24645706 24646031 -119140424 + AluY SINE Alu 1 309 -2 1015 178 47 19 chr12 24646086 24646299 -119140156 - MER20 DNA MER1_type 0 219 1 192 368 63 17 chr12 24646840 24647014 -119139441 - L3 LINE CR1 -297 1280 1099 895 280 0 9 chr12 24647327 24647552 -119138903 + MER58A DNA MER1_type 1 223 -1 1879 137 7 36 chr12 24647625 24647932 -119138523 - AluJb SINE Alu -4 308 11 1331 212 85 40 chr12 24648083 24648611 -119137844 - MER20B DNA MER1_type 0 783 232 21 57 0 0 chr12 24648704 24648739 -119137716 + AT_rich Low_complexity Low_complexity 1 35 0 324 255 85 26 chr12 24649249 24649402 -119137053 + HAL1 LINE L1 837 998 -1509 1606 200 10 0 chr12 24649405 24649705 -119136750 + AluJb SINE Alu 10 312 0 1327 199 33 25 chr12 24649761 24650037 -119136418 + AluJo SINE Alu 5 282 -30 357 306 28 14 chr12 24650418 24650562 -119135893 + HAL1 LINE L1 1567 1712 -795 323 263 0 129 chr12 24650893 24651064 -119135391 + HAL1b LINE L1 721 869 -479 1031 201 122 72 chr12 24651304 24651787 -119134668 - Charlie4a DNA MER1_type -1 507 1 5832 146 11 25 chr12 24652082 24652875 -119133580 + L1MA7 LINE L1 5157 5932 -359 1861 131 4 0 chr12 24652875 24653150 -119133305 + AluSx SINE Alu 37 312 0 5832 146 11 25 chr12 24653150 24653504 -119132951 + L1MA7 LINE L1 5932 6290 -1 22 0 0 0 chr12 24654704 24654726 -119131729 + AT_rich Low_complexity Low_complexity 1 22 0 2352 229 52 21 chr12 24654780 24655434 -119131021 - L1ME3A LINE L1 -1 6169 5496 5189 130 16 38 chr12 24656356 24656708 -119129747 + HSMAR2 DNA Mariner 8 366 -936 2121 128 3 0 chr12 24656708 24657012 -119129443 + AluSg SINE Alu 1 305 -5 5189 130 16 38 chr12 24657012 24657550 -119128905 + HSMAR2 DNA Mariner 366 878 -424 28 29 0 0 chr12 24657771 24657806 -119128649 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr12 24659664 24659696 -119126759 + (A)n Simple_repeat Simple_repeat 1 32 0 504 313 86 73 chr12 24660918 24661723 -119124732 + L2 LINE L2 1811 2625 -689 1826 155 0 11 chr12 24662208 24662532 -119123923 + AluJb SINE Alu 2 322 0 857 292 55 41 chr12 24663487 24664145 -119122310 - L2 LINE L2 -94 3219 2497 204 267 13 27 chr12 24665100 24665175 -119121280 + (TATG)n Simple_repeat Simple_repeat 2 75 0 219 360 63 18 chr12 24666511 24666622 -119119833 + L2 LINE L2 3148 3263 -9 214 274 85 28 chr12 24667262 24667368 -119119087 - L2 LINE L2 -7 3265 3154 198 143 0 0 chr12 24669664 24669699 -119116756 + (CA)n Simple_repeat Simple_repeat 2 36 0 328 214 23 92 chr12 24670108 24670239 -119116216 + LTR65 LTR ERV1 4 125 -544 310 237 82 10 chr12 24670509 24670606 -119115849 + LTR65 LTR ERV1 560 663 -6 464 288 34 7 chr12 24671566 24671712 -119114743 + MIR SINE MIR 48 197 -65 2151 110 3 3 chr12 24672486 24672796 -119113659 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 24675138 24675158 -119111297 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3223 253 41 84 chr12 24677686 24679659 -119106796 + L1MEc LINE L1 49 1932 -4464 1600 165 0 72 chr12 24679659 24679980 -119106475 + AluJo SINE Alu 1 298 -14 3223 253 41 84 chr12 24679980 24680051 -119106404 + L1MEc LINE L1 1932 2005 -4391 496 234 28 35 chr12 24680057 24680198 -119106257 + AluJb SINE Alu 113 252 -60 24 53 0 0 chr12 24730272 24730310 -119056145 + AT_rich Low_complexity Low_complexity 1 38 0 3990 243 19 12 chr12 24730363 24731479 -119054976 + L1MB7 LINE L1 3777 4899 -1247 1571 257 58 93 chr12 24731509 24731667 -119054788 + MER21B LTR ERV1 21 183 -680 2347 63 0 3 chr12 24731667 24731968 -119054487 + AluY SINE Alu 1 300 -11 1571 257 58 93 chr12 24731968 24732109 -119054346 + MER21B LTR ERV1 183 327 -536 1872 135 0 17 chr12 24732109 24732398 -119054057 + AluSx SINE Alu 4 287 -25 1571 257 58 93 chr12 24732398 24732841 -119053614 + MER21B LTR ERV1 327 738 -125 3791 201 36 19 chr12 24732870 24734132 -119052323 + L1MB7 LINE L1 4901 6184 0 1385 176 14 11 chr12 24734641 24734925 -119051530 + L1MA3 LINE L1 6020 6304 -1 276 283 156 15 chr12 24735330 24735471 -119050984 + MIR SINE MIR 3 157 -51 391 306 181 10 chr12 24736373 24736572 -119049883 - MIR SINE MIR -10 252 20 376 308 0 0 chr12 24736817 24736908 -119049547 + L2 LINE L2 3223 3313 0 782 298 180 6 chr12 24737038 24737571 -119048884 - L2 LINE L2 0 3313 2692 313 299 21 0 chr12 24737641 24737738 -119048717 - MER20B DNA MER1_type -640 143 45 707 284 167 13 chr12 24737740 24738039 -119048416 - L2 LINE L2 -631 2683 2339 2054 127 0 0 chr12 24738856 24739162 -119047293 - AluSx SINE Alu 0 306 1 315 49 0 0 chr12 24739240 24739281 -119047174 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 258 81 0 0 chr12 24741040 24741077 -119045378 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 285 124 58 chr12 24744126 24744263 -119042192 + MIR SINE MIR 67 212 -50 425 329 50 43 chr12 24745151 24745431 -119041024 + MER102b DNA MER1_type 48 329 -12 1854 170 6 10 chr12 24746955 24747303 -119039152 + AluJo SINE Alu 1 347 0 207 100 0 0 chr12 24747809 24747839 -119038616 + (T)n Simple_repeat Simple_repeat 1 30 0 231 88 0 0 chr12 24748023 24748057 -119038398 + (TG)n Simple_repeat Simple_repeat 1 34 0 678 210 65 52 chr12 24749696 24749944 -119036511 - L1MC4a LINE L1 -1737 6071 5821 207 0 0 0 chr12 24749949 24749972 -119036483 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1982 92 4 22 chr12 24750201 24750473 -119035982 - AluSx SINE Alu -45 267 1 924 163 22 70 chr12 24750573 24750800 -119035655 + MER20 DNA MER1_type 4 219 0 22 0 0 0 chr12 24751062 24751084 -119035371 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 24751572 24751594 -119034861 + AT_rich Low_complexity Low_complexity 1 22 0 2045 95 0 32 chr12 24751698 24751982 -119034473 + AluY SINE Alu 1 275 -36 1431 202 0 18 chr12 24754439 24754711 -119031744 - AluJb SINE Alu -45 267 1 22 0 0 0 chr12 24758005 24758027 -119028428 + AT_rich Low_complexity Low_complexity 1 22 0 718 268 62 68 chr12 24758657 24759026 -119027429 + L1ME LINE L1 5398 5764 -357 26 30 0 0 chr12 24759157 24759190 -119027265 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr12 24759778 24759810 -119026645 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr12 24760102 24760125 -119026330 + (A)n Simple_repeat Simple_repeat 1 23 0 319 307 0 0 chr12 24760668 24760756 -119025699 + MIR SINE MIR 175 262 0 1887 115 31 0 chr12 24760778 24761039 -119025416 - AluSq SINE Alu -44 269 1 444 257 62 110 chr12 24761085 24761290 -119025165 + L2 LINE L2 3036 3224 -89 360 0 0 0 chr12 24761290 24761330 -119025125 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 257 62 110 chr12 24761330 24761416 -119025039 + L2 LINE L2 3224 3313 0 372 299 41 117 chr12 24763154 24763616 -119022839 - L2 LINE L2 0 3272 2846 2222 110 0 10 chr12 24763699 24764007 -119022448 - AluSx SINE Alu -7 305 1 1791 139 82 4 chr12 24764457 24764738 -119021717 - AluSx SINE Alu -9 303 1 2390 101 0 0 chr12 24767618 24767924 -119018531 - AluSq SINE Alu -7 306 1 23 0 0 0 chr12 24767926 24767949 -119018506 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24767998 24768019 -119018436 + AT_rich Low_complexity Low_complexity 1 21 0 217 211 14 56 chr12 24769137 24769208 -119017247 + A-rich Low_complexity Low_complexity 5 72 0 624 228 48 24 chr12 24769949 24770116 -119016339 + MIR SINE MIR 90 260 -2 1794 169 33 28 chr12 24770381 24770743 -119015712 - MER47A DNA MER2_type 0 366 3 180 0 0 0 chr12 24770771 24770791 -119015664 + (TA)n Simple_repeat Simple_repeat 2 21 0 389 234 138 7 chr12 24771154 24771299 -119015156 - MER106B DNA MER1_type 0 1059 896 214 250 18 0 chr12 24772670 24772726 -119013729 + GA-rich Low_complexity Low_complexity 3 59 0 2193 123 0 3 chr12 24773510 24773820 -119012635 - AluSg SINE Alu -1 309 1 2140 92 7 3 chr12 24773946 24774230 -119012225 + AluSc SINE Alu 1 285 -24 243 0 0 0 chr12 24774337 24774364 -119012091 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 259 168 18 chr12 24774811 24775031 -119011424 - MIR SINE MIR -3 259 7 243 161 0 0 chr12 24775255 24775311 -119011144 + GA-rich Low_complexity Low_complexity 2 57 0 512 344 40 32 chr12 24775660 24775913 -119010542 + L3 LINE CR1 1319 1573 -4 475 208 0 20 chr12 24776427 24776528 -119009927 + MIR SINE MIR 164 262 0 435 328 65 11 chr12 24776621 24776807 -119009648 + L3 LINE CR1 1380 1575 -2 552 284 62 58 chr12 24776921 24777164 -119009291 + MIR SINE MIR 18 261 -1 2006 130 3 13 chr12 24778994 24779294 -119007161 + AluSx SINE Alu 1 297 -15 2463 70 0 3 chr12 24779300 24779612 -119006843 + AluY SINE Alu 1 311 0 183 282 17 144 chr12 24780973 24781154 -119005301 + L3 LINE CR1 1339 1496 -81 1580 212 17 7 chr12 24781319 24781616 -119004839 + AluJb SINE Alu 1 300 -12 307 325 135 55 chr12 24781667 24781967 -119004488 - L1ME4a LINE L1 -3 6118 5844 1233 174 150 12 chr12 24781967 24782089 -119004366 - AluJb SINE Alu -14 288 184 459 0 0 0 chr12 24782089 24782140 -119004315 + (TG)n Simple_repeat Simple_repeat 2 52 0 1233 174 150 12 chr12 24782140 24782270 -119004185 - AluJb SINE Alu -118 184 1 307 325 135 55 chr12 24782270 24782679 -119003776 - L1ME4a LINE L1 -277 5844 5352 270 171 86 0 chr12 24782749 24782819 -119003636 + MER116 DNA Mariner 5 80 0 816 161 0 0 chr12 24783166 24783309 -119003146 + FRAM SINE Alu 33 175 -1 264 212 30 0 chr12 24784654 24784720 -119001735 + U3 snRNA snRNA 1 68 -149 1247 186 59 46 chr12 24785734 24786040 -119000415 - AluJo SINE Alu -2 310 1 2257 103 3 0 chr12 24786122 24786413 -119000042 - AluSg1 SINE Alu -17 292 1 723 309 44 25 chr12 24786937 24787345 -118999110 - L1ME LINE L1 -366 5796 5381 2652 288 126 41 chr12 24787575 24788023 -118998432 - L1ME LINE L1 -1025 5121 4713 255 31 0 0 chr12 24788023 24788055 -118998400 + (CA)n Simple_repeat Simple_repeat 1 32 0 2652 288 126 41 chr12 24788055 24789006 -118997449 - L1ME LINE L1 -1433 4713 3844 1842 114 0 82 chr12 24789006 24789322 -118997133 + AluSx SINE Alu 1 290 -22 2652 288 126 41 chr12 24789322 24790541 -118995914 - L1ME LINE L1 -2302 3844 2279 319 344 24 0 chr12 24790552 24790677 -118995778 - MIR SINE MIR -126 136 9 25 31 0 0 chr12 24791238 24791270 -118995185 + AT_rich Low_complexity Low_complexity 1 32 0 363 309 15 100 chr12 24791284 24791543 -118994912 - L1ME4a LINE L1 -73 6048 5812 274 307 20 10 chr12 24791589 24791690 -118994765 - L1ME4a LINE L1 -309 5812 5711 270 209 70 23 chr12 24791701 24791787 -118994668 + MLT1J LTR MaLR 420 509 -2 273 310 20 0 chr12 24791821 24791921 -118994534 - L1ME4a LINE L1 -518 5603 5502 26 30 0 0 chr12 24793156 24793189 -118993266 + AT_rich Low_complexity Low_complexity 1 33 0 499 181 12 0 chr12 24793504 24793664 -118992791 + (TA)n Simple_repeat Simple_repeat 1 162 0 1541 230 7 0 chr12 24794488 24794788 -118991667 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 24795104 24795125 -118991330 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr12 24797290 24797315 -118989140 + (A)n Simple_repeat Simple_repeat 1 25 0 1211 7 0 0 chr12 24798280 24798458 -118987997 + L1PA4 LINE L1 6008 6185 0 401 244 161 39 chr12 24798693 24798898 -118987557 - MIR SINE MIR -30 232 3 241 276 0 17 chr12 24799475 24799533 -118986922 - MER91 DNA MER1_type 0 196 140 222 37 0 0 chr12 24800489 24800516 -118985939 + (TG)n Simple_repeat Simple_repeat 2 28 0 503 236 204 44 chr12 24800688 24800899 -118985556 + LTR33A LTR ERVL 226 484 -39 2044 118 0 35 chr12 24800899 24801212 -118985243 + AluSq SINE Alu 1 302 -11 503 236 204 44 chr12 24801212 24801250 -118985205 + LTR33A LTR ERVL 484 515 -8 24 0 0 0 chr12 24801263 24801287 -118985168 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 24801937 24801960 -118984495 + AT_rich Low_complexity Low_complexity 1 23 0 410 304 165 41 chr12 24802002 24802585 -118983870 + L3 LINE CR1 670 1324 -253 946 195 0 0 chr12 24802604 24802758 -118983697 - FRAM SINE Alu -22 154 1 272 270 40 0 chr12 24802762 24802836 -118983619 + L3 LINE CR1 1341 1417 -160 251 182 36 0 chr12 24803163 24803218 -118983237 + MLT1E2 LTR MaLR 95 151 -503 1609 268 21 8 chr12 24803291 24803672 -118982783 + MLT1E2 LTR MaLR 219 604 -22 2088 143 0 0 chr12 24803870 24804164 -118982291 + AluSx SINE Alu 2 295 -17 5048 71 9 4 chr12 24804299 24804977 -118981478 - L1PA7 LINE L1 -1 6153 5473 1503 180 17 20 chr12 24805005 24805300 -118981155 + AluJb SINE Alu 5 298 -14 298 169 0 14 chr12 24805731 24805802 -118980653 - L1MA7 LINE L1 -2 6289 6220 327 104 0 0 chr12 24806665 24806713 -118979742 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 258 7 84 chr12 24807016 24807135 -118979320 + MER96 DNA MER1_type? 1 107 -68 2341 66 7 7 chr12 24807135 24807436 -118979019 - AluY SINE Alu -9 302 2 384 258 7 84 chr12 24807436 24807471 -118978984 + MER96 DNA MER1_type? 107 143 -32 2142 107 10 7 chr12 24807674 24807974 -118978481 + AluSq SINE Alu 1 301 -12 267 368 76 14 chr12 24808499 24808643 -118977812 + MIR3 SINE MIR 43 195 -13 250 286 18 62 chr12 24808796 24808908 -118977547 - MIR SINE MIR -1 261 155 1826 132 30 27 chr12 24808918 24809213 -118977242 - AluJb SINE Alu 0 312 17 506 149 23 0 chr12 24809454 24809541 -118976914 - MIR SINE MIR -102 160 72 209 274 0 16 chr12 24809814 24809876 -118976579 - MIR SINE MIR -132 76 16 480 249 225 0 chr12 24809910 24810079 -118976376 + MIR SINE MIR 56 262 0 196 335 63 0 chr12 24810324 24810412 -118976043 + MIR SINE MIR 37 130 -78 249 248 34 151 chr12 24811841 24812079 -118974376 + MLT1K LTR MaLR 379 588 0 1184 161 38 0 chr12 24814836 24815047 -118971408 - MER20 DNA MER1_type 0 219 1 225 0 0 0 chr12 24815530 24815555 -118970900 + (A)n Simple_repeat Simple_repeat 1 25 0 3298 184 40 7 chr12 24816254 24816926 -118969529 + MER50 LTR ERV1 29 722 -12 255 269 30 0 chr12 24816963 24817030 -118969425 + L2 LINE L2 3186 3254 -18 1574 199 78 49 chr12 24819385 24819811 -118966644 + MER39 LTR ERV1 270 707 0 182 328 17 17 chr12 24820480 24820538 -118965917 + L3b LINE CR1 1296 1353 -230 300 345 9 9 chr12 24820607 24820717 -118965738 + L2 LINE L2 2715 2824 -490 561 232 44 61 chr12 24820795 24820976 -118965479 + L2 LINE L2 3136 3313 0 223 357 104 13 chr12 24821457 24821611 -118964844 + L2 LINE L2 2908 3075 -197 1702 172 7 10 chr12 24821614 24821904 -118964551 + AluJo SINE Alu 13 301 -11 1187 258 53 45 chr12 24822119 24822568 -118963887 + L2 LINE L2 2258 2710 -604 1039 17 0 0 chr12 24822570 24822687 -118963768 - L1PA4 LINE L1 -262 5893 5777 1598 55 0 0 chr12 24822687 24822883 -118963572 + L1PA4 LINE L1 5955 6153 -2 764 224 17 6 chr12 24822941 24823120 -118963335 + L2 LINE L2 2728 2908 -406 322 333 0 10 chr12 24823166 24823265 -118963190 + L2 LINE L2 3205 3302 -11 233 384 58 0 chr12 24823288 24823374 -118963081 + L2 LINE L2 3182 3272 0 21 36 0 0 chr12 24824006 24824034 -118962421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 24824914 24824934 -118961521 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 24825075 24825103 -118961352 + AT_rich Low_complexity Low_complexity 1 28 0 2028 113 20 3 chr12 24826284 24826586 -118959869 + AluSx SINE Alu 1 307 -5 815 275 133 17 chr12 24826590 24826950 -118959505 + MLT1J LTR MaLR 107 508 -3 467 226 186 0 chr12 24826990 24827114 -118959341 + MIR SINE MIR 116 262 0 500 374 59 7 chr12 24827772 24828058 -118958397 + L2 LINE L2 2440 2740 -574 254 322 41 112 chr12 24828202 24828444 -118958011 + L2 LINE L2 3001 3225 -47 2411 63 0 0 chr12 24828938 24829252 -118957203 + AluY SINE Alu 3 316 0 601 261 59 0 chr12 24831385 24831538 -118954917 + MER5A DNA MER1_type 7 168 -21 240 111 0 0 chr12 24831649 24831685 -118954770 + (TA)n Simple_repeat Simple_repeat 1 36 0 803 282 24 8 chr12 24832962 24833214 -118953241 + MIR SINE MIR 5 260 -2 211 259 0 52 chr12 24833408 24833466 -118952989 + MIR SINE MIR 57 111 -151 23 54 0 0 chr12 24833479 24833516 -118952939 + AT_rich Low_complexity Low_complexity 1 37 0 207 327 33 65 chr12 24833936 24834089 -118952366 + L3b LINE CR1 1269 1416 -167 269 306 81 46 chr12 24834339 24834512 -118951943 + MIR SINE MIR 58 236 -26 199 167 71 0 chr12 24834858 24834900 -118951555 + L2 LINE L2 3263 3307 -6 609 248 29 152 chr12 24834918 24835398 -118951057 + L2 LINE L2 2893 3313 0 2054 134 3 25 chr12 24835752 24835932 -118950523 - AluSq SINE Alu 0 313 142 1913 85 0 33 chr12 24835932 24836202 -118950253 - AluY SINE Alu -11 300 40 2054 134 3 25 chr12 24836202 24836341 -118950114 - AluSq SINE Alu -171 142 1 1782 145 70 25 chr12 24837543 24837902 -118948553 - THE1C LTR MaLR 0 375 1 2253 113 0 0 chr12 24838090 24838390 -118948065 + AluSx SINE Alu 1 300 -12 319 267 92 33 chr12 24838961 24839081 -118947374 + L2 LINE L2 3186 3312 -1 431 283 105 77 chr12 24839123 24839476 -118946979 + HAL1 LINE L1 25 387 -2120 254 355 54 16 chr12 24839587 24839773 -118946682 + HAL1 LINE L1 705 897 -1610 2225 104 7 13 chr12 24839917 24840225 -118946230 + AluSc SINE Alu 1 306 -3 856 278 50 43 chr12 24840481 24840898 -118945557 + HAL1 LINE L1 1364 1783 -724 217 44 0 67 chr12 24840900 24840945 -118945510 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr12 24841849 24841870 -118944585 + AT_rich Low_complexity Low_complexity 1 21 0 342 293 29 73 chr12 24841873 24842146 -118944309 + L1ME4a LINE L1 3887 4147 -1999 287 263 72 20 chr12 24842730 24842882 -118943573 + L1ME4a LINE L1 5317 5476 -2332 444 281 101 46 chr12 24842942 24843270 -118943185 + L1ME4a LINE L1 5588 5933 -188 584 230 161 22 chr12 24843734 24843964 -118942491 - MIR SINE MIR 0 262 1 2170 97 4 0 chr12 24844424 24844742 -118941713 - AluY SINE Alu 0 319 1 2182 114 3 19 chr12 24845684 24845991 -118940464 - AluSx SINE Alu -10 302 1 25 51 0 0 chr12 24846342 24846381 -118940074 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr12 24846532 24846555 -118939900 + AT_rich Low_complexity Low_complexity 1 23 0 2434 121 3 22 chr12 24846941 24847312 -118939143 + THE1B LTR MaLR 1 364 0 443 241 57 35 chr12 24847328 24847469 -118938986 - L2 LINE L2 -2 3311 3168 210 91 0 0 chr12 24847479 24847512 -118938943 + (TC)n Simple_repeat Simple_repeat 2 34 0 360 0 0 0 chr12 24847514 24847554 -118938901 + (CA)n Simple_repeat Simple_repeat 1 40 0 377 347 163 29 chr12 24847710 24848085 -118938370 - L2 LINE L2 -340 2974 2550 354 289 108 31 chr12 24848111 24848536 -118937919 + LTR16A LTR ERVL 1 450 0 1806 161 11 3 chr12 24849544 24849829 -118936626 + AluJb SINE Alu 1 287 -25 466 279 80 80 chr12 24849925 24850302 -118936153 + LTR33A LTR ERVL 8 384 -139 557 329 108 38 chr12 24850590 24851144 -118935311 + L2 LINE L2 2135 2727 -587 273 194 37 19 chr12 24851776 24851884 -118934571 + (TA)n Simple_repeat Simple_repeat 2 111 0 217 311 11 56 chr12 24851978 24852068 -118934387 + L2 LINE L2 3184 3269 -3 2286 110 0 0 chr12 24852352 24852660 -118933795 + AluSc SINE Alu 1 308 -1 2215 114 0 3 chr12 24854804 24855101 -118931354 - AluSg SINE Alu -14 296 1 2082 36 0 0 chr12 24855140 24855387 -118931068 + L1PA5 LINE L1 5904 6150 -4 957 198 116 35 chr12 24855418 24855736 -118930719 - MER2 DNA MER2_type 0 345 2 881 130 31 6 chr12 24855740 24855901 -118930554 - L1MA8 LINE L1 -71 6220 6056 189 0 0 0 chr12 24856399 24856420 -118930035 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 120 0 3 chr12 24856714 24857033 -118929422 - AluSx SINE Alu 0 318 1 2675 92 17 0 chr12 24857048 24857406 -118929049 + THE1B LTR MaLR 1 364 0 3489 181 7 14 chr12 24857621 24858310 -118928145 - L1MB2 LINE L1 -10 6161 5478 231 200 0 0 chr12 24858670 24858725 -118927730 - Alu SINE Alu -1 301 247 1661 157 26 0 chr12 24858726 24858993 -118927462 - AluJb SINE Alu -38 274 1 1694 173 0 37 chr12 24859120 24859438 -118927017 + AluSx SINE Alu 1 307 0 24 32 0 0 chr12 24859569 24859600 -118926855 + AT_rich Low_complexity Low_complexity 1 31 0 240 243 108 14 chr12 24859647 24859721 -118926734 + L2 LINE L2 3184 3264 -8 237 163 23 0 chr12 24861076 24861119 -118925336 - MER115 DNA AcHobo -9 684 641 599 310 20 40 chr12 24861138 24861338 -118925117 - MER115 DNA AcHobo -358 335 140 2296 81 0 10 chr12 24861992 24862288 -118924167 - AluSg SINE Alu -17 293 1 331 315 133 47 chr12 24862294 24863030 -118923425 - L2 LINE L2 -2 3311 2510 187 150 25 50 chr12 24863556 24863596 -118922859 + MER5A DNA MER1_type 14 52 -137 1084 60 0 0 chr12 24863644 24863777 -118922678 - AluY SINE Alu 0 311 179 193 345 42 8 chr12 24863800 24863919 -118922536 - MER5B DNA MER1_type -55 123 1 234 250 0 0 chr12 24864765 24864813 -118921642 + CT-rich Low_complexity Low_complexity 2 49 0 192 385 53 27 chr12 24865655 24865842 -118920613 - L2 LINE L2 -3 3269 3078 1642 171 10 10 chr12 24865910 24866220 -118920235 + AluSx SINE Alu 1 310 -2 2041 0 0 9 chr12 24866258 24866486 -118919969 - AluYa5 SINE Alu -85 226 1 1554 232 68 24 chr12 24866486 24866895 -118919560 + LTR40a LTR ERVL 93 519 0 665 322 24 5 chr12 24867100 24867311 -118919144 - MIR SINE MIR 0 262 48 268 329 70 80 chr12 24867386 24867672 -118918783 - L2 LINE L2 -69 3203 2921 23 0 0 0 chr12 24867828 24867851 -118918604 + AT_rich Low_complexity Low_complexity 1 23 0 250 232 0 0 chr12 24868727 24868783 -118917672 - L2 LINE L2 -4 3268 3213 266 257 54 0 chr12 24869238 24869312 -118917143 - MER69 DNA AcHobo -1 2525 2448 555 182 125 26 chr12 24869350 24869542 -118916913 - MER69 DNA AcHobo -317 2209 1999 * 760 236 143 117 chr12 24869528 24870082 -118916373 - MER69 DNA AcHobo -1958 568 1 377 281 13 7 chr12 24871790 24871943 -118914512 + (TA)n Simple_repeat Simple_repeat 2 155 0 1798 157 17 17 chr12 24872316 24872615 -118913840 - AluSx SINE Alu -13 299 1 306 67 0 0 chr12 24873673 24873718 -118912737 + (CA)n Simple_repeat Simple_repeat 2 46 0 1826 147 24 10 chr12 24874827 24875119 -118911336 - AluJb SINE Alu -16 296 1 267 299 299 6 chr12 24875363 24875530 -118910925 - MIR SINE MIR -17 245 30 23 0 0 0 chr12 24878704 24878727 -118907728 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 24879951 24879979 -118906476 + AT_rich Low_complexity Low_complexity 1 28 0 455 274 0 0 chr12 24880461 24880574 -118905881 - MLT1E LTR MaLR -456 137 25 203 307 67 53 chr12 24881418 24881643 -118904812 + L2 LINE L2 2302 2529 -785 2112 114 3 0 chr12 24882359 24882649 -118903806 - AluSx SINE Alu -21 291 1 608 177 31 31 chr12 24883745 24883875 -118902580 + AluJo SINE Alu 42 171 -141 298 328 45 22 chr12 24883911 24884045 -118902410 - MIR SINE MIR -42 220 84 181 229 0 0 chr12 24884156 24884191 -118902264 + L2 LINE L2 3171 3205 -67 612 0 0 0 chr12 24884198 24884266 -118902189 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 189 74 0 0 chr12 24884270 24884297 -118902158 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 742 125 8 0 chr12 24884304 24884424 -118902031 + MER50 LTR ERV1 485 605 -129 267 122 0 0 chr12 24884510 24884559 -118901896 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 234 250 0 0 chr12 24884952 24885000 -118901455 + CT-rich Low_complexity Low_complexity 2 49 0 196 316 75 48 chr12 24885841 24886028 -118900427 - L2 LINE L2 -3 3269 3078 2061 116 10 10 chr12 24886096 24886406 -118900049 + AluSx SINE Alu 1 310 -2 453 298 81 19 chr12 24886473 24886634 -118899821 + L2 LINE L2 3143 3313 0 1177 75 0 0 chr12 24887020 24887166 -118899289 + AluY SINE Alu 152 297 -14 315 290 55 41 chr12 24887387 24887532 -118898923 - MIR SINE MIR 0 262 116 207 308 0 26 chr12 24888524 24888602 -118897853 + GA-rich Low_complexity Low_complexity 2 77 0 867 232 27 13 chr12 24889859 24890083 -118896372 + MIR SINE MIR 24 250 -12 261 83 0 0 chr12 24890149 24890185 -118896270 + (TG)n Simple_repeat Simple_repeat 1 36 0 30 59 0 0 chr12 24891566 24891617 -118894838 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr12 24893046 24893087 -118893368 + (TA)n Simple_repeat Simple_repeat 1 41 0 245 307 108 28 chr12 24894929 24895105 -118891350 + MLT1K LTR MaLR 259 448 -140 209 265 29 15 chr12 24895435 24895503 -118890952 + GA-rich Low_complexity Low_complexity 1 69 0 311 325 32 32 chr12 24897103 24897229 -118889226 + L2 LINE L2 3144 3269 -3 439 340 108 10 chr12 24897458 24897661 -118888794 + MIR SINE MIR 13 235 -27 1446 215 47 85 chr12 24897778 24898272 -118888183 + MER77 LTR ERV1 123 597 -8 2312 79 0 10 chr12 24898734 24899037 -118887418 + AluY SINE Alu 1 300 -11 230 305 0 0 chr12 24899259 24899318 -118887137 - L2 LINE L2 -999 2315 2257 672 162 17 0 chr12 24899431 24899548 -118886907 - BC200 scRNA scRNA -81 119 1 1507 193 30 3 chr12 24899728 24900023 -118886432 + Tigger7 DNA MER2_type 6 308 -425 1983 128 6 64 chr12 24900025 24900163 -118886292 - MER1B DNA MER1_type -2373 339 195 2338 131 27 5 chr12 24900163 24900530 -118885925 + THE1C LTR MaLR 1 375 0 1983 128 6 64 chr12 24900530 24900751 -118885704 - MER1B DNA MER1_type -2517 195 1 2309 166 24 15 chr12 24900751 24901215 -118885240 + Tigger7 DNA MER2_type 303 770 -1717 668 175 0 0 chr12 24901215 24901335 -118885120 + Tigger7 DNA MER2_type 2118 2237 -250 255 204 37 0 chr12 24903784 24903838 -118882617 + CT-rich Low_complexity Low_complexity 2 57 0 1829 152 38 3 chr12 24904296 24904585 -118881870 + AluJo SINE Alu 5 303 -9 225 186 17 34 chr12 24905518 24905577 -118880878 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2422 50 0 60 chr12 24905681 24905998 -118880457 - AluY SINE Alu -13 298 1 667 235 96 3 chr12 24906007 24906186 -118880269 - MIR SINE MIR -10 252 62 878 211 0 29 chr12 24906308 24906532 -118879923 + FRAM SINE Alu 1 83 0 224 281 0 18 chr12 24906587 24906644 -118879811 + CT-rich Low_complexity Low_complexity 1 56 0 223 314 76 34 chr12 24907073 24907191 -118879264 + MIR SINE MIR 14 136 -126 * 285 314 89 40 chr12 24907179 24907303 -118879152 + L2 LINE L2 3143 3272 0 290 189 207 18 chr12 24907304 24907415 -118879040 + MIR SINE MIR 130 261 -1 571 327 70 0 chr12 24907460 24907659 -118878796 + MIR SINE MIR 33 245 -17 1124 143 30 0 chr12 24907847 24908015 -118878440 + AluJb SINE Alu 129 301 -11 21 0 0 0 chr12 24908035 24908056 -118878399 + AT_rich Low_complexity Low_complexity 1 21 0 947 227 14 5 chr12 24908086 24908293 -118878162 + MER6B DNA MER2_type 1 209 -1 209 108 27 0 chr12 24908355 24908392 -118878063 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1348 89 139 0 chr12 24909341 24909543 -118876912 - MER30 DNA MER1_type 0 230 1 507 281 56 0 chr12 24910327 24910505 -118875950 + LTR33 LTR ERVL 27 214 -307 236 291 0 97 chr12 24910567 24910670 -118875785 + LTR33 LTR ERVL 330 422 -99 1654 173 22 28 chr12 24910670 24911034 -118875421 - L1MB8 LINE L1 -6 6172 5811 3798 20 0 2 chr12 24911034 24911468 -118874987 - L1PA3 LINE L1 -3 6152 5713 934 73 102 0 chr12 24911489 24911626 -118874829 - L1PA11 LINE L1 -3 6171 6021 1980 151 34 8 chr12 24911628 24912013 -118874442 - L1MB8 LINE L1 -359 5825 5431 253 262 39 19 chr12 24912014 24912117 -118874338 + LTR33 LTR ERVL 409 513 -8 476 319 134 23 chr12 24912138 24912445 -118874010 - L3 LINE CR1 -321 1256 916 3258 120 39 32 chr12 24912509 24913068 -118873387 - L1PB4 LINE L1 -8 6148 5586 1701 111 9 0 chr12 24913169 24913445 -118873010 - L1PB4 LINE L1 -596 5560 5281 447 354 180 5 chr12 24913588 24913955 -118872500 - L3 LINE CR1 -899 678 248 957 290 137 32 chr12 24914145 24914955 -118871500 + L2 LINE L2 2405 3313 0 507 216 8 8 chr12 24917077 24917202 -118869253 - AluSc SINE Alu -184 125 1 1989 220 102 74 chr12 24917203 24917273 -118869182 - MER69B DNA AcHobo -1608 918 851 1514 188 14 14 chr12 24917273 24917555 -118868900 + AluJb SINE Alu 1 282 -30 1989 220 102 74 chr12 24917555 24918351 -118868104 - MER69B DNA AcHobo -1675 851 28 1019 197 131 60 chr12 24919944 24920123 -118866332 + MER58D DNA MER1_type 6 171 -2249 2238 113 0 0 chr12 24920123 24920423 -118866032 + AluSg SINE Alu 1 300 -10 1019 197 131 60 chr12 24920423 24920479 -118865976 + MER58D DNA MER1_type 171 222 -2198 1842 174 7 0 chr12 24920479 24920789 -118865666 + AluJo SINE Alu 1 312 0 1019 197 131 60 chr12 24920789 24920903 -118865552 + MER58D DNA MER1_type 222 381 -5 404 336 98 15 chr12 24921149 24921414 -118865041 + L1ME LINE L1 5436 5722 -399 382 205 12 0 chr12 24921606 24921689 -118864766 - MER69 DNA AcHobo -8 2518 2435 * 435 325 37 29 chr12 24921684 24921927 -118864528 - MER69 DNA AcHobo -2279 247 3 300 252 165 9 chr12 24922377 24922492 -118863963 + L2 LINE L2 3180 3312 -1 1843 163 125 24 chr12 24923811 24924235 -118862220 + MLT1C LTR MaLR 1 467 0 688 311 85 11 chr12 24926981 24927251 -118859204 - L2 LINE L2 -188 3125 2836 5779 208 86 54 chr12 24927365 24927847 -118858608 - L1MD1 LINE L1 -6 6236 5771 4952 75 1 18 chr12 24927847 24928518 -118857937 + L1PA8A LINE L1 5462 6121 -10 5779 208 86 54 chr12 24928518 24929054 -118857401 - L1MD1 LINE L1 -471 5771 5253 1951 163 0 0 chr12 24929054 24929349 -118857106 - AluJb SINE Alu -17 295 1 5779 208 86 54 chr12 24929349 24931827 -118854628 - L1MD1 LINE L1 -989 5253 2640 2200 50 90 4 chr12 24931827 24932106 -118854349 - AluY SINE Alu -8 303 1 5779 208 86 54 chr12 24932106 24932179 -118854276 - L1MD1 LINE L1 -3602 2640 2571 275 296 0 11 chr12 24936015 24936103 -118850352 + MIR SINE MIR 176 262 0 328 106 0 0 chr12 24936992 24937039 -118849416 + MLT1L LTR MaLR 148 194 -421 1714 145 3 61 chr12 24937812 24938123 -118848332 - AluSx SINE Alu -19 293 1 2076 220 76 53 chr12 24938883 24939741 -118846714 + L1MC5 LINE L1 6708 7531 -430 239 274 60 36 chr12 24939856 24940024 -118846431 + L1ME3A LINE L1 5999 6170 0 254 264 70 10 chr12 24940983 24941133 -118845322 + MLT1I LTR MaLR 67 221 -188 1902 179 7 0 chr12 24941414 24941722 -118844733 + AluJo SINE Alu 3 312 0 825 179 0 7 chr12 24944741 24944913 -118841542 + AluSg/x SINE Alu 139 309 0 1787 51 34 17 chr12 24944913 24945147 -118841308 + L1PA6 LINE L1 5904 6141 -13 191 296 0 0 chr12 24945961 24946015 -118840440 + MIR SINE MIR 203 256 -6 27 0 0 26 chr12 24947134 24947154 -118839301 + AT_rich Low_complexity Low_complexity 1 21 -16 681 164 112 0 chr12 24947154 24947270 -118839185 + FLAM_A SINE Alu 5 133 0 27 0 0 26 chr12 24947270 24947287 -118839168 + AT_rich Low_complexity Low_complexity 21 37 0 298 245 41 0 chr12 24947403 24947505 -118838950 + MIR SINE MIR 34 120 -142 2217 82 0 0 chr12 24947563 24947893 -118838562 + AluY SINE Alu 1 330 0 390 42 0 0 chr12 24948131 24948179 -118838276 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr12 24948975 24948999 -118837456 + AT_rich Low_complexity Low_complexity 1 24 0 264 343 0 9 chr12 24949380 24949488 -118836967 + MIR3 SINE MIR 97 203 -5 347 333 0 1 chr12 24949664 24949777 -118836678 - MIR SINE MIR -70 138 38 1177 210 10 23 chr12 24949913 24950218 -118836237 - L1MA10 LINE L1 -11 6323 6023 567 292 59 14 chr12 24950700 24950919 -118835536 + MIR SINE MIR 23 251 -11 2189 99 11 0 chr12 24951060 24951343 -118835112 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr12 24951612 24951633 -118834822 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 85 26 chr12 24952396 24952773 -118833682 - L2 LINE L2 -1110 2204 1806 2586 123 44 7 chr12 24953035 24953448 -118833007 + MSTA LTR MaLR 1 428 0 425 298 153 43 chr12 24953595 24953968 -118832487 + MLT1K LTR MaLR 175 588 0 219 180 0 100 chr12 24954073 24954123 -118832332 + L2 LINE L2 3254 3298 -15 14300 128 12 26 chr12 24954236 24955733 -118830722 + Tigger1 DNA MER2_type 6 1456 -962 7109 49 9 0 chr12 24955733 24956967 -118829488 + L1PA7 LINE L1 4876 6152 -2 14300 128 12 26 chr12 24956967 24957917 -118828538 + Tigger1 DNA MER2_type 1456 2418 0 2142 116 0 3 chr12 24958142 24958445 -118828010 + AluY SINE Alu 3 304 -7 226 315 0 0 chr12 24958489 24958543 -118827912 + L2 LINE L2 3218 3271 -1 414 0 0 0 chr12 24959122 24959168 -118827287 + (TG)n Simple_repeat Simple_repeat 1 46 0 993 276 63 72 chr12 24960816 24961394 -118825061 - L2 LINE L2 0 3313 2736 2145 115 7 7 chr12 24961476 24961780 -118824675 - AluSx SINE Alu -8 304 1 306 0 0 0 chr12 24962798 24962832 -118823623 + (TG)n Simple_repeat Simple_repeat 1 34 0 190 200 0 25 chr12 24962850 24962890 -118823565 - MIR SINE MIR -112 150 112 1050 280 55 15 chr12 24963099 24963499 -118822956 + LTR16A LTR ERVL 28 443 -7 196 352 70 28 chr12 24963904 24964046 -118822409 + L3 LINE CR1 190 337 -1240 249 396 63 19 chr12 24964113 24964272 -118822183 + L3 LINE CR1 467 632 -945 1033 308 100 45 chr12 24964588 24965246 -118821209 - L2 LINE L2 -7 3306 2592 2784 301 50 21 chr12 24965395 24966280 -118820175 + L1MC3 LINE L1 6865 7774 -11 294 379 121 7 chr12 24966320 24966452 -118820003 + L3 LINE CR1 992 1108 -469 1808 123 84 21 chr12 24966452 24966736 -118819719 + AluSx SINE Alu 1 302 -10 294 379 121 7 chr12 24966736 24966875 -118819580 + L3 LINE CR1 1108 1294 -283 1134 298 187 6 chr12 24967322 24968211 -118818244 + L2 LINE L2 2230 3309 -4 309 185 82 96 chr12 24968727 24968873 -118817582 - MER103 DNA DNA -20 146 3 5145 119 39 17 chr12 24968889 24969014 -118817441 - L1MA3 LINE L1 0 6305 6184 392 0 0 20 chr12 24969014 24969063 -118817392 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2005 125 14 4 chr12 24969063 24969342 -118817113 - AluSx SINE Alu -30 282 1 5145 119 39 17 chr12 24969342 24970120 -118816335 - L1MA3 LINE L1 -120 6185 5381 441 317 16 48 chr12 24970191 24970377 -118816078 + MIR SINE MIR 13 192 -70 202 284 102 11 chr12 24970998 24971086 -118815369 + L3 LINE CR1 1475 1570 -7 22 0 0 0 chr12 24971591 24971613 -118814842 + AT_rich Low_complexity Low_complexity 1 22 0 417 286 36 41 chr12 24974375 24974571 -118811884 + LTR16A LTR ERVL 144 338 -112 283 335 55 37 chr12 24974682 24974846 -118811609 - MIR3 SINE MIR -26 182 16 295 333 44 0 chr12 24975073 24975187 -118811268 - MIR SINE MIR -42 220 102 419 170 21 0 chr12 24976533 24976627 -118809828 - MER53 DNA DNA 0 189 94 278 230 264 0 chr12 24976631 24976718 -118809737 - MER5A DNA MER1_type -21 168 59 614 233 28 40 chr12 24976993 24977169 -118809286 + MER5B DNA MER1_type 1 174 -4 614 245 148 0 chr12 24977188 24977343 -118809112 + MER5A DNA MER1_type 11 188 -1 1290 167 12 4 chr12 25180127 25180378 -118606077 - L1M2 LINE L1 -681 5631 5379 1465 192 112 0 chr12 25180383 25180706 -118605749 - MER47A DNA MER2_type -6 360 2 2672 175 27 0 chr12 25180712 25181272 -118605183 - L1M2 LINE L1 -769 5377 4803 1728 250 150 18 chr12 25181375 25181662 -118604793 - L1ME LINE L1 -5191 879 631 612 27 0 0 chr12 25181662 25181736 -118604719 + (CTTTG)n Simple_repeat Simple_repeat 1 74 0 1728 250 150 18 chr12 25181736 25182220 -118604235 - L1ME LINE L1 -5439 631 6 1101 287 83 16 chr12 25182259 25182691 -118603764 - L2 LINE L2 -1457 1857 1397 4278 156 62 5 chr12 25182914 25183743 -118602712 + L1MA3 LINE L1 5430 6305 0 325 316 53 0 chr12 25183768 25183882 -118602573 + MIR3 SINE MIR 72 191 -17 228 67 0 0 chr12 25185211 25185241 -118601214 + (TG)n Simple_repeat Simple_repeat 1 30 0 2220 103 13 10 chr12 25185642 25185953 -118600502 - AluSq SINE Alu -1 312 1 1541 141 8 27 chr12 25185955 25186218 -118600237 - AluJb SINE Alu -22 290 33 485 189 136 18 chr12 25186501 25186670 -118599785 + MER53 DNA DNA 1 189 0 183 80 0 0 chr12 25187372 25187397 -118599058 + (CA)n Simple_repeat Simple_repeat 1 25 0 332 308 58 29 chr12 25188353 25188525 -118597930 + MER5B DNA MER1_type 1 177 -1 22 0 0 0 chr12 25189329 25189351 -118597104 + AT_rich Low_complexity Low_complexity 1 22 0 448 262 53 39 chr12 25189490 25189849 -118596606 + L1ME LINE L1 2854 3217 -2929 253 349 42 12 chr12 25189937 25190269 -118596186 + L1ME LINE L1 4204 4545 -1601 1433 213 4 4 chr12 25190299 25190562 -118595893 - AluJo SINE Alu -49 263 1 809 241 104 68 chr12 25190582 25190992 -118595463 + L1ME LINE L1 4568 4962 -1202 5125 45 3 10 chr12 25190992 25191589 -118594866 - SVA Other Other 0 1386 794 809 241 104 68 chr12 25191589 25191604 -118594851 + L1ME LINE L1 4962 4975 -1189 1707 161 6 35 chr12 25191604 25191915 -118594540 - AluJb SINE Alu -2 310 9 809 241 104 68 chr12 25191915 25192443 -118594012 + L1ME LINE L1 4975 5565 -599 2258 101 0 3 chr12 25192443 25192740 -118593715 + AluSg SINE Alu 2 297 -13 809 241 104 68 chr12 25192740 25192810 -118593645 + L1ME LINE L1 5565 5631 -533 911 208 193 41 chr12 25192862 25193256 -118593199 + MLT2B1 LTR ERVL 3 456 -64 6997 162 11 24 chr12 25193361 25194837 -118591618 - L1 LINE L1 -1307 5860 4404 1641 237 38 40 chr12 25194817 25195806 -118590649 - L1 LINE L1 -4805 2293 1 * 2844 236 49 15 chr12 25196029 25197171 -118589284 + L1ME1 LINE L1 4980 6162 -4 1998 194 9 13 chr12 25197293 25197852 -118588603 + L1M1 LINE L1 4911 5471 -743 562 204 204 6 chr12 25198232 25198394 -118588061 - MIR SINE MIR 0 262 69 1265 190 43 23 chr12 25198394 25198768 -118587687 - MSTB2 LTR MaLR 0 457 1 242 228 88 0 chr12 25198768 25198825 -118587630 - MIR SINE MIR -189 73 12 729 285 25 63 chr12 25199189 25199586 -118586869 + LTR16B LTR ERVL 81 462 -2 2256 110 0 3 chr12 25199873 25200182 -118586273 - AluSg SINE Alu -2 308 1 1117 226 12 20 chr12 25200614 25200866 -118585589 + MIR SINE MIR 2 251 -11 202 140 20 20 chr12 25200896 25200946 -118585509 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 133 0 0 chr12 25201010 25201040 -118585415 + (CA)n Simple_repeat Simple_repeat 2 31 0 629 265 50 40 chr12 25201264 25201464 -118584991 + MIR SINE MIR 49 250 -12 267 31 0 0 chr12 25202138 25202170 -118584285 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 249 90 90 chr12 25204216 25204380 -118582075 + HAL1 LINE L1 2121 2287 -220 2883 6 0 0 chr12 25204380 25204692 -118581763 - AluYb8 SINE Alu -6 312 1 373 249 90 90 chr12 25204692 25204772 -118581683 + HAL1 LINE L1 2286 2365 -142 456 308 41 0 chr12 25205215 25205361 -118581094 - MIR SINE MIR -19 243 92 622 343 100 23 chr12 25205896 25206612 -118579843 + L2 LINE L2 2538 3313 0 554 297 151 5 chr12 25207209 25207428 -118579027 + MIR SINE MIR 5 255 -7 225 0 0 0 chr12 25208443 25208468 -118577987 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 247 274 263 6 chr12 25210283 25210458 -118575997 + L3b LINE CR1 1113 1332 -251 183 184 26 0 chr12 25210650 25210688 -118575767 - L2 LINE L2 -19 3294 3256 1018 201 63 17 chr12 25210918 25211157 -118575298 + LTR40c LTR ERVL 5 254 -211 1205 293 47 43 chr12 25211165 25211746 -118574709 + HERVL40 LTR ERVL 4162 4744 -786 324 148 0 0 chr12 25214617 25214678 -118571777 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 25214874 25214899 -118571556 + GC_rich Low_complexity Low_complexity 1 25 0 194 79 0 26 chr12 25214902 25214940 -118571515 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 444 19 0 0 chr12 25215651 25215704 -118570751 + (CA)n Simple_repeat Simple_repeat 1 53 0 387 315 60 0 chr12 25218077 25218093 -118568362 + MIR SINE MIR 100 114 -148 1961 137 3 43 chr12 25218093 25218415 -118568040 - AluSc SINE Alu 0 309 1 387 315 60 0 chr12 25218415 25218547 -118567908 + MIR SINE MIR 114 257 -5 1069 272 117 2 chr12 25219277 25219678 -118566777 - LTR16B LTR ERVL 0 464 18 241 268 98 0 chr12 25219831 25219913 -118566542 + MIR SINE MIR 110 199 -63 184 311 214 10 chr12 25221928 25222031 -118564424 + L2 LINE L2 3143 3266 -6 482 256 151 19 chr12 25222095 25222317 -118564138 - MIR SINE MIR -6 256 6 207 275 14 29 chr12 25222350 25222419 -118564036 + MIR SINE MIR 125 192 -70 1293 189 20 96 chr12 25222462 25222806 -118563649 - AluYb8 SINE Alu 0 318 1 485 278 16 26 chr12 25222980 25223171 -118563284 + MER5A DNA MER1_type 1 189 0 214 200 0 0 chr12 25225080 25225120 -118561335 + T-rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr12 25226888 25226912 -118559543 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 24046 82 37 6 chr12 25226912 25232819 -118553636 - L1PA6 LINE L1 -11 6143 11 24 0 0 0 chr12 25233028 25233052 -118553403 + AT_rich Low_complexity Low_complexity 1 24 0 190 314 86 48 chr12 25234525 25234630 -118551825 + MIR SINE MIR 33 141 -67 1940 94 4 0 chr12 25234653 25234907 -118551548 + AluSg SINE Alu 44 298 -12 5499 147 45 0 chr12 25235082 25236206 -118550249 - L1MC1 LINE L1 0 6333 5122 2641 229 27 7 chr12 25236317 25237029 -118549426 - L1MC1 LINE L1 -1278 4868 4143 248 287 35 0 chr12 25239113 25239200 -118547255 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 403 81 0 0 chr12 25239725 25239787 -118546668 - L1MA1 LINE L1 0 6302 6241 231 287 86 57 chr12 25240020 25240229 -118546226 + L1MC4a LINE L1 4630 4844 -1302 410 321 80 53 chr12 25240658 25241197 -118545258 + L1MC4a LINE L1 5399 5967 -154 675 310 29 8 chr12 25244211 25244453 -118542002 - MIR SINE MIR 0 262 16 191 196 250 0 chr12 25245012 25245068 -118541387 + MER5A DNA MER1_type 114 183 -6 305 241 69 0 chr12 25245819 25245906 -118540549 - MLT1J LTR MaLR -4 507 415 435 335 63 11 chr12 25245937 25246128 -118540327 - MLT1J LTR MaLR -307 204 4 838 214 0 22 chr12 25246616 25246798 -118539657 + FRAM SINE Alu 1 173 -3 2427 237 61 26 chr12 25246819 25247472 -118538983 + HERVL40 LTR ERVL 4853 5528 -2 1081 229 243 14 chr12 25247476 25247843 -118538612 + LTR40c LTR ERVL 3 453 -12 619 300 69 48 chr12 25248094 25248570 -118537885 + MLT1J LTR MaLR 7 492 -19 316 253 106 73 chr12 25248792 25249065 -118537390 + MLT1K LTR MaLR 184 465 -123 224 306 47 80 chr12 25249250 25249525 -118536930 - L2 LINE L2 -183 3089 2824 302 319 49 12 chr12 25249568 25249731 -118536724 - L2 LINE L2 -578 2736 2568 861 303 61 44 chr12 25249734 25249943 -118536512 - LTR16B LTR ERVL -12 452 248 2109 137 126 8 chr12 25249943 25250324 -118536131 - MSTA LTR MaLR -2 426 1 861 303 61 44 chr12 25250324 25250526 -118535929 - LTR16B LTR ERVL -216 248 34 211 305 8 99 chr12 25250803 25250934 -118535521 - L2 LINE L2 -15 3298 3180 1195 127 52 38 chr12 25250971 25251183 -118535272 + AluJo SINE Alu 82 296 -16 802 220 11 32 chr12 25252844 25253030 -118533425 - MIR SINE MIR -6 256 75 2623 192 61 68 chr12 25253206 25254793 -118531662 + L1MCa LINE L1 64 1488 -4852 1609 218 62 25 chr12 25254833 25255233 -118531222 + MLT1C LTR MaLR 53 467 0 1673 216 100 61 chr12 25255242 25255915 -118530540 + L1MCa LINE L1 1692 2343 -4221 7816 19 0 0 chr12 25255915 25257595 -118528860 + L1PA3 LINE L1 4476 6155 0 1673 216 100 61 chr12 25257595 25257811 -118528644 + L1MCa LINE L1 2343 2549 -4015 2514 143 7 24 chr12 25257811 25258230 -118528225 - Tigger2a DNA MER2_type 0 434 23 203 59 0 29 chr12 25259432 25259466 -118526989 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 870 85 78 0 chr12 25259697 25259826 -118526629 + MER85 DNA T2_type 1 139 0 627 217 87 25 chr12 25260038 25260199 -118526256 - MIR SINE MIR -10 252 82 288 174 0 0 chr12 25260218 25260264 -118526191 - Tigger2a DNA MER2_type -388 46 1 2668 249 33 30 chr12 25260266 25261866 -118524589 + L1MCa LINE L1 2550 4334 -2230 2192 125 0 0 chr12 25263169 25263473 -118522982 + AluY SINE Alu 1 304 -7 1825 135 35 19 chr12 25263660 25263972 -118522483 + MER2 DNA MER2_type 29 345 0 30 59 0 0 chr12 25264088 25264139 -118522316 + AT_rich Low_complexity Low_complexity 1 51 0 1810 188 0 0 chr12 25264195 25264483 -118521972 + AluJb SINE Alu 3 290 -22 223 71 48 0 chr12 25264484 25264526 -118521929 + (TA)n Simple_repeat Simple_repeat 1 44 0 703 233 7 0 chr12 25264700 25264846 -118521609 - MER45A DNA AcHobo -20 158 12 276 311 15 7 chr12 25264871 25265006 -118521449 + (TA)n Simple_repeat Simple_repeat 2 137 0 369 354 133 0 chr12 25265657 25265883 -118520572 - MIR SINE MIR -6 256 1 1556 308 95 63 chr12 25265888 25266944 -118519511 - L3 LINE CR1 -30 1547 459 375 281 74 30 chr12 25269017 25269152 -118517303 + MIR SINE MIR 116 256 -6 231 216 52 93 chr12 25269144 25269241 -118517214 - MIR SINE MIR -64 198 106 * 197 0 71 0 chr12 25269435 25269463 -118516992 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3590 53 2 7 chr12 25269463 25269918 -118516537 - L1PA7 LINE L1 -16 6138 5686 2303 56 0 69 chr12 25272252 25272571 -118513884 + AluY SINE Alu 1 297 -14 25 0 0 0 chr12 25272710 25272735 -118513720 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr12 25272774 25272805 -118513650 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 25272804 25272828 -118513627 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 333 0 0 0 chr12 25272827 25272864 -118513591 + (GA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr12 25272891 25272916 -118513539 + AT_rich Low_complexity Low_complexity 1 25 0 239 0 32 0 chr12 25273111 25273142 -118513313 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2106 45 52 11 chr12 25273150 25273419 -118513036 - AluY SINE Alu -31 280 1 28 29 0 0 chr12 25273602 25273637 -118512818 + AT_rich Low_complexity Low_complexity 1 35 0 210 37 0 0 chr12 25273992 25274019 -118512436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2386 58 7 10 chr12 25275082 25275392 -118511063 - AluSc SINE Alu 0 309 1 1552 196 0 0 chr12 25275416 25275682 -118510773 + AluJo SINE Alu 1 266 -46 401 280 63 63 chr12 25275975 25276259 -118510196 + MLT1I LTR MaLR 35 288 -121 24 32 0 0 chr12 25276680 25276711 -118509744 + AT_rich Low_complexity Low_complexity 1 31 0 590 181 0 43 chr12 25277290 25277478 -118508977 + GA-rich Low_complexity Low_complexity 1 180 0 1988 115 14 0 chr12 25278430 25278708 -118507747 + AluSc SINE Alu 1 282 -27 495 0 0 0 chr12 25278708 25278763 -118507692 + (CA)n Simple_repeat Simple_repeat 2 56 0 228 163 23 0 chr12 25279724 25279767 -118506688 - L2 LINE L2 -1 3312 3269 210 118 0 0 chr12 25279993 25280027 -118506428 + (CA)n Simple_repeat Simple_repeat 2 35 0 228 35 0 0 chr12 25280169 25280198 -118506257 + (TC)n Simple_repeat Simple_repeat 1 29 0 238 369 70 56 chr12 25280991 25281346 -118505109 + L3 LINE CR1 1 360 -1217 209 139 23 23 chr12 25281410 25281453 -118505002 + GA-rich Low_complexity Low_complexity 5 47 0 1383 178 8 0 chr12 25281506 25281742 -118504713 + L1PB4 LINE L1 5912 6149 -7 1519 156 68 4 chr12 25282181 25282476 -118503979 - AluSg SINE Alu 0 312 1 519 335 74 4 chr12 25282604 25282834 -118503621 - MIR SINE MIR -12 250 5 435 301 36 87 chr12 25283003 25283335 -118503120 + L3 LINE CR1 904 1218 -359 249 33 0 0 chr12 25283375 25283405 -118503050 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 226 293 67 133 chr12 25283450 25283795 -118502660 - L2 LINE L2 -37 3235 2914 738 189 0 0 chr12 25283822 25283944 -118502511 - Tigger3b DNA MER2_type 0 1232 1111 * 1705 215 35 19 chr12 25283939 25284049 -118502406 + MER82 DNA MER2_type 272 379 -274 207 0 0 0 chr12 25284049 25284072 -118502383 + (CA)n Simple_repeat Simple_repeat 2 24 0 1705 215 35 19 chr12 25284072 25284337 -118502118 + MER82 DNA MER2_type 379 653 0 254 312 32 24 chr12 25284568 25284693 -118501762 - L2 LINE L2 -2977 337 212 22 35 0 0 chr12 25284782 25284811 -118501644 + AT_rich Low_complexity Low_complexity 1 29 0 3307 89 0 24 chr12 25284811 25285314 -118501141 - L1MA2 LINE L1 0 6304 5814 6245 61 15 0 chr12 25285314 25286115 -118500340 - L1PA7 LINE L1 -14 6140 5328 * 15328 123 25 35 chr12 25286091 25288750 -118497705 - L1PA12 LINE L1 -2973 4611 1148 21662 147 29 26 chr12 25288784 25291645 -118494810 - L1MA3 LINE L1 -475 7249 4397 2033 98 6 80 chr12 25291645 25291981 -118494474 - AluSq SINE Alu -2 311 1 21662 147 29 26 chr12 25291981 25293030 -118493425 - L1MA3 LINE L1 -3327 4397 3352 203 79 26 0 chr12 25293030 25293068 -118493387 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 21662 147 29 26 chr12 25293068 25296373 -118490082 - L1MA3 LINE L1 -4372 3352 16 371 349 81 36 chr12 25296539 25296555 -118489900 - L2 LINE L2 -866 2448 2434 1090 197 57 111 chr12 25296555 25296619 -118489836 - MLT1A1 LTR MaLR 0 365 299 2502 67 0 13 chr12 25296619 25296934 -118489521 + AluY SINE Alu 1 311 0 1090 197 57 111 chr12 25296934 25297255 -118489200 - MLT1A1 LTR MaLR -66 299 1 371 349 81 36 chr12 25297255 25297596 -118488859 - L2 LINE L2 -880 2434 2075 450 354 85 5 chr12 25297758 25297970 -118488485 + L3 LINE CR1 1335 1563 -14 227 313 84 56 chr12 25298438 25298504 -118487951 + LTR16C LTR ERVL 308 371 -120 1489 193 144 23 chr12 25298504 25298857 -118487598 + MSTD LTR MaLR 1 396 0 227 313 84 56 chr12 25298857 25298969 -118487486 + LTR16C LTR ERVL 371 491 0 322 273 73 0 chr12 25299572 25299682 -118486773 - MIR SINE MIR -77 185 68 393 254 173 0 chr12 25299831 25299941 -118486514 + L2 LINE L2 3132 3260 -12 294 260 10 50 chr12 25299995 25300095 -118486360 - L2 LINE L2 -98 3215 3120 2082 292 41 27 chr12 25300098 25300222 -118486233 - L2 LINE L2 -298 3015 2894 2122 94 7 0 chr12 25300222 25300499 -118485956 + AluY SINE Alu 1 279 -32 243 0 0 0 chr12 25300500 25300527 -118485928 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2082 292 41 27 chr12 25300527 25301110 -118485345 - L2 LINE L2 -418 2895 2295 707 279 18 14 chr12 25301110 25301332 -118485123 - L2 LINE L2 -1277 2037 1815 799 284 13 7 chr12 25301358 25301624 -118484831 + L1MC5 LINE L1 6643 6868 -1093 296 297 22 7 chr12 25301631 25301769 -118484686 + L1MEc LINE L1 51 190 -6206 1151 243 83 46 chr12 25302134 25302653 -118483802 + L1MC5 LINE L1 7016 7553 -408 6500 140 42 12 chr12 25302695 25303825 -118482630 + Tigger3b DNA MER2_type 2 1165 -66 484 160 0 112 chr12 25303938 25304063 -118482392 + MLT2B1 LTR ERVL 410 520 0 255 257 53 9 chr12 25304068 25304181 -118482274 + L1ME LINE L1 5684 5801 -361 276 209 42 112 chr12 25304198 25304413 -118482042 + L1ME3A LINE L1 5752 5951 -219 331 184 276 10 chr12 25304472 25304570 -118481885 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 950 135 119 0 chr12 25304564 25304749 -118481706 + Tigger4(Zombi) DNA MER2_type 2523 2729 -2 1438 187 14 103 chr12 25304919 25305318 -118481137 - MLT1A1 LTR MaLR -3 423 1 227 327 0 0 chr12 25305571 25305623 -118480832 + L2 LINE L2 3213 3264 -8 2249 113 3 0 chr12 25305861 25306163 -118480292 - AluSx SINE Alu -9 303 1 479 283 102 16 chr12 25306171 25306358 -118480097 + Charlie8 DNA MER1_type 44 246 -2171 617 337 28 20 chr12 25308065 25308320 -118478135 + MIR SINE MIR 6 262 0 189 213 0 0 chr12 25308382 25308429 -118478026 + (TG)n Simple_repeat Simple_repeat 2 48 0 9173 79 3 0 chr12 25312180 25314190 -118472265 - L1PA7 LINE L1 -4 6150 4136 281 301 70 20 chr12 25314432 25314631 -118471824 + MER113 DNA MER1_type? 11 219 -302 25 51 0 0 chr12 25314665 25314704 -118471751 + AT_rich Low_complexity Low_complexity 1 39 0 397 313 88 0 chr12 25314772 25314954 -118471501 + MER113 DNA MER1_type? 324 521 0 280 281 0 0 chr12 25315026 25315083 -118471372 + L2 LINE L2 3256 3312 -1 328 310 139 8 chr12 25315289 25315418 -118471037 + MLT1K LTR MaLR 376 521 -67 298 345 101 52 chr12 25315596 25315903 -118470552 + L2 LINE L2 2951 3272 0 475 328 165 26 chr12 25318788 25319316 -118467139 + L2 LINE L2 1327 1927 -1387 1412 142 54 23 chr12 25319329 25319556 -118466899 + L1PA16 LINE L1 5899 6136 -30 2018 198 54 5 chr12 25319556 25319961 -118466494 - MSTB LTR MaLR 0 426 2 1412 142 54 23 chr12 25319961 25319993 -118466462 + L1PA16 LINE L1 6136 6166 0 36 0 0 0 chr12 25320035 25320071 -118466384 + AT_rich Low_complexity Low_complexity 1 36 0 2158 100 3 29 chr12 25320127 25320437 -118466018 - AluY SINE Alu -7 304 3 222 325 117 26 chr12 25320453 25320684 -118465771 + L2 LINE L2 1999 2250 -1064 426 353 81 4 chr12 25320692 25320964 -118465491 + L2 LINE L2 2569 2861 -453 403 257 40 47 chr12 25322325 25322473 -118463982 - MLT1I LTR MaLR -262 147 1 499 306 68 28 chr12 25322872 25323120 -118463335 - MIR SINE MIR -3 259 2 340 312 24 71 chr12 25323414 25323584 -118462871 + L2 LINE L2 3152 3313 0 236 240 450 0 chr12 25323605 25323734 -118462721 - MIR SINE MIR -29 233 47 4657 162 33 9 chr12 25328846 25330050 -118456405 + L1MB7 LINE L1 4963 6334 0 2338 112 0 0 chr12 25330359 25330671 -118455784 + AluSx SINE Alu 1 312 0 312 296 16 16 chr12 25330674 25330799 -118455656 + L1MEc LINE L1 1706 1830 -4566 * 335 221 5 69 chr12 25330793 25330861 -118455594 + L1ME1 LINE L1 6024 6079 -85 2272 87 0 7 chr12 25330861 25331160 -118455295 + AluY SINE Alu 1 297 -14 335 221 5 69 chr12 25331160 25331221 -118455234 + L1ME1 LINE L1 6079 6142 -22 1951 184 72 8 chr12 25331273 25331675 -118454780 + MSTA LTR MaLR 1 428 0 356 349 60 57 chr12 25331765 25332347 -118454108 + L2 LINE L2 1153 1736 -1578 234 324 77 33 chr12 25332567 25332749 -118453706 - L2 LINE L2 -1121 2193 2004 238 354 42 59 chr12 25334470 25334707 -118451748 + L3 LINE CR1 1301 1533 -44 1290 227 108 21 chr12 25334717 25335090 -118451365 - Charlie4a DNA MER1_type -1473 488 72 1848 157 13 0 chr12 25335090 25335390 -118451065 + 7SLRNA srpRNA srpRNA 1 304 -16 1290 227 108 21 chr12 25335390 25335443 -118451012 - Charlie4a DNA MER1_type -1889 72 25 698 273 22 6 chr12 25335571 25335754 -118450701 + MIR SINE MIR 12 197 -65 381 301 35 52 chr12 25336123 25336296 -118450159 - L2 LINE L2 -1021 2293 2124 201 213 0 0 chr12 25336456 25336503 -118449952 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 247 321 143 0 chr12 25337014 25337098 -118449357 + MIR SINE MIR 31 126 -136 1733 304 110 35 chr12 25337148 25338357 -118448098 + L2 LINE L2 1901 3227 -86 2075 130 39 0 chr12 25338357 25338641 -118447814 - AluSg SINE Alu -15 295 1 1733 304 110 35 chr12 25338641 25338736 -118447719 + L2 LINE L2 3227 3313 0 269 247 49 12 chr12 25338779 25338860 -118447595 + MIR SINE MIR 166 249 -13 21 57 0 0 chr12 25338931 25338966 -118447489 + AT_rich Low_complexity Low_complexity 1 35 0 278 226 0 0 chr12 25339874 25339927 -118446528 + L2 LINE L2 3215 3267 -5 213 311 0 0 chr12 25339952 25340013 -118446442 + MIR SINE MIR 128 188 -74 2245 123 7 0 chr12 25340336 25340645 -118445810 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr12 25340650 25340672 -118445783 + AT_rich Low_complexity Low_complexity 1 22 0 183 326 47 23 chr12 25341016 25341102 -118445353 - L2 LINE L2 -48 3224 3137 632 305 81 42 chr12 25342099 25342316 -118444139 + LTR33 LTR ERVL 4 211 -310 2376 91 7 0 chr12 25342316 25342624 -118443831 - AluSq SINE Alu -3 310 1 632 305 81 42 chr12 25342624 25342885 -118443570 + LTR33 LTR ERVL 211 501 -20 240 35 0 0 chr12 25342915 25342944 -118443511 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 401 91 30 0 chr12 25342952 25343018 -118443437 + GA-rich Low_complexity Low_complexity 4 71 0 877 201 108 12 chr12 25343148 25343397 -118443058 - L1ME2 LINE L1 -11 6153 5881 287 320 0 0 chr12 25345988 25346066 -118440389 - MIR SINE MIR -87 121 44 244 281 0 0 chr12 25346347 25346404 -118440051 + (TG)n Simple_repeat Simple_repeat 2 58 0 2005 118 46 26 chr12 25346420 25346726 -118439729 + AluJb SINE Alu 1 312 0 236 228 0 18 chr12 25347414 25347471 -118438984 + L2 LINE L2 3256 3311 -2 249 163 0 0 chr12 25348229 25348272 -118438183 - L2 LINE L2 -4 3309 3267 2162 190 26 42 chr12 25348848 25349347 -118437108 + MLT1D LTR MaLR 5 495 -10 286 382 0 0 chr12 25349406 25349508 -118436947 - L2 LINE L2 -1 3312 3211 2514 261 98 31 chr12 25350042 25350192 -118436263 + MER69B DNA AcHobo 18 157 -2369 1500 186 24 90 chr12 25350192 25350526 -118435929 + AluJb SINE Alu 1 312 0 2514 261 98 31 chr12 25350526 25351008 -118435447 + MER69B DNA AcHobo 157 605 -1921 2186 111 71 31 chr12 25351008 25351358 -118435097 + THE1B LTR MaLR 1 364 0 2514 261 98 31 chr12 25351358 25351832 -118434623 + MER69B DNA AcHobo 605 1199 -27 180 324 15 29 chr12 25352062 25352130 -118434325 + MIR SINE MIR 71 137 -125 1038 232 29 20 chr12 25352135 25352381 -118434074 + MIR SINE MIR 15 262 0 2468 110 30 3 chr12 25353202 25353565 -118432890 - THE1C LTR MaLR 0 375 3 284 228 41 81 chr12 25353596 25353719 -118432736 - MIR SINE MIR -65 197 80 1871 169 23 6 chr12 25355428 25355782 -118430673 + MLT1A1 LTR MaLR 1 360 -5 671 303 65 57 chr12 25355807 25356174 -118430281 + L2 LINE L2 2931 3300 -13 180 111 0 0 chr12 25356174 25356201 -118430254 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 242 333 11 35 chr12 25356241 25356328 -118430127 + L2 LINE L2 3186 3270 -2 199 271 29 43 chr12 25356553 25356623 -118429832 - L2 LINE L2 -11 3302 3234 21 36 0 0 chr12 25357099 25357127 -118429328 + AT_rich Low_complexity Low_complexity 1 28 0 2314 78 3 0 chr12 25357524 25357820 -118428635 + AluY SINE Alu 1 297 -14 191 195 24 0 chr12 25357867 25357908 -118428547 - MIR3 SINE MIR 0 208 167 201 260 40 0 chr12 25358043 25358093 -118428362 - MIR3 SINE MIR -6 202 151 751 150 0 64 chr12 25358185 25358325 -118428130 + FLAM_C SINE Alu 2 132 -1 230 246 140 9 chr12 25358339 25358453 -118428002 + MER103 DNA DNA 38 166 0 261 324 71 37 chr12 25358499 25358662 -118427793 - MIR3 SINE MIR -33 175 2 338 298 47 74 chr12 25360482 25360697 -118425758 - MIR SINE MIR -11 251 43 2196 226 27 16 chr12 25361395 25361908 -118424547 + LTR40a LTR ERVL 1 519 0 1704 249 49 90 chr12 25361916 25362948 -118423507 + HERVL40 LTR ERVL 8 1088 -4442 1149 241 79 6 chr12 25362956 25363271 -118423184 + LTR40a LTR ERVL 182 519 0 182 228 18 35 chr12 25364390 25364447 -118422008 + L2 LINE L2 3258 3313 0 333 0 0 0 chr12 25364994 25365031 -118421424 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 396 0 0 0 chr12 25365030 25365074 -118421381 + (GA)n Simple_repeat Simple_repeat 1 44 0 294 225 113 0 chr12 25366201 25366272 -118420183 - MIR SINE MIR -6 256 178 225 159 0 0 chr12 25366282 25366326 -118420129 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 285 250 70 30 chr12 25366542 25366642 -118419813 + MIR3 SINE MIR 103 206 -2 262 267 147 0 chr12 25367066 25367141 -118419314 - MIR3 SINE MIR -11 197 112 2175 95 26 7 chr12 25368615 25368921 -118417534 + AluSx SINE Alu 1 312 0 189 0 0 0 chr12 25369294 25369315 -118417140 + (A)n Simple_repeat Simple_repeat 1 21 0 405 292 65 7 chr12 25369318 25369472 -118416983 + MIR SINE MIR 55 217 -45 23 0 0 0 chr12 25370136 25370159 -118416296 + AT_rich Low_complexity Low_complexity 1 23 0 411 334 50 53 chr12 25371031 25371184 -118415271 + L2 LINE L2 2987 3139 -174 1877 164 0 0 chr12 25371184 25371476 -118414979 + AluJb SINE Alu 3 294 -18 411 334 50 53 chr12 25371476 25371642 -118414813 + L2 LINE L2 3139 3305 -8 203 305 39 97 chr12 25371758 25371825 -118414630 - MIR SINE MIR 0 262 193 2032 128 3 0 chr12 25371825 25372114 -118414341 + AluSx SINE Alu 22 311 -1 203 305 39 97 chr12 25372114 25372200 -118414255 - MIR SINE MIR -69 193 118 221 242 32 32 chr12 25372556 25372618 -118413837 + L3 LINE CR1 1515 1576 -1 950 195 53 0 chr12 25373617 25373843 -118412612 + L1MA4 LINE L1 6062 6299 -1 754 83 0 0 chr12 25374187 25374308 -118412147 + AluSp/q SINE Alu 188 308 0 21 36 0 0 chr12 25374315 25374343 -118412112 + AT_rich Low_complexity Low_complexity 1 28 0 1519 252 80 10 chr12 25375061 25375549 -118410906 + L1ME3A LINE L1 5649 6170 0 23 33 0 0 chr12 25376190 25376220 -118410235 + AT_rich Low_complexity Low_complexity 1 30 0 337 294 120 43 chr12 25376288 25376472 -118409983 + MIR SINE MIR 65 262 0 192 158 0 0 chr12 25377364 25377402 -118409053 + T-rich Low_complexity Low_complexity 1 38 0 201 314 29 0 chr12 25377711 25377781 -118408674 + MIR SINE MIR 191 262 0 513 170 19 0 chr12 25378394 25378500 -118407955 + L1MB8 LINE L1 6065 6172 -6 1635 310 140 52 chr12 25379806 25380579 -118405876 + L2 LINE L2 1724 2427 -886 1497 181 0 69 chr12 25380579 25380911 -118405544 - AluJb SINE Alu 0 311 1 1635 310 140 52 chr12 25380911 25381608 -118404847 + L2 LINE L2 2427 3307 -6 2033 177 7 68 chr12 25382333 25382691 -118403764 + MLT2D LTR ERVL 1 379 -35 405 0 0 0 chr12 25382691 25382736 -118403719 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 546 16 0 0 chr12 25382735 25382798 -118403657 + (TA)n Simple_repeat Simple_repeat 1 63 0 2033 177 7 68 chr12 25382736 25382880 -118403575 + MLT2D LTR ERVL 379 414 0 277 350 73 17 chr12 25386563 25386740 -118399715 + MER5A DNA MER1_type 1 187 -2 2039 158 0 0 chr12 25387671 25387981 -118398474 + AluSx SINE Alu 1 310 -2 185 319 222 0 chr12 25387985 25388120 -118398335 + L2 LINE L2 2887 3051 -221 202 273 15 45 chr12 25388228 25388294 -118398161 + L2 LINE L2 3199 3262 -10 183 129 0 0 chr12 25388850 25388881 -118397574 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 189 0 0 0 chr12 25390016 25390037 -118396418 + (TAA)n Simple_repeat Simple_repeat 2 22 0 188 179 0 0 chr12 25390377 25390405 -118396050 + MIR SINE MIR 203 230 -32 181 302 0 0 chr12 25390380 25390423 -118396032 + L2 LINE L2 3251 3293 -20 * 501 301 115 5 chr12 25391667 25391876 -118394579 - MIR SINE MIR -27 235 4 2282 107 0 0 chr12 25392381 25392679 -118393776 + AluSx SINE Alu 1 298 -14 410 251 157 27 chr12 25392829 25393052 -118393403 + LTR16A LTR ERVL 106 357 -93 397 250 64 21 chr12 25393628 25393768 -118392687 - L2 LINE L2 -9 3304 3159 500 90 26 0 chr12 25394643 25394721 -118391734 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1328 140 40 35 chr12 25394721 25394949 -118391506 - AluJo SINE Alu -50 262 34 298 158 79 30 chr12 25395099 25395200 -118391255 + L1MC5 LINE L1 7640 7745 -216 353 271 127 44 chr12 25395229 25395355 -118391100 + MIR SINE MIR 57 204 -58 3146 196 28 6 chr12 25395355 25395993 -118390462 - MER82 DNA MER2_type -1 652 1 353 271 127 44 chr12 25395993 25396047 -118390408 + MIR SINE MIR 204 252 -10 336 277 149 7 chr12 25397051 25397192 -118389263 + LTR16C LTR ERVL 312 472 -19 1399 110 14 10 chr12 25397270 25397479 -118388976 + AluSg/x SINE Alu 98 307 -5 2036 131 16 41 chr12 25397670 25398031 -118388424 - AluJb SINE Alu 0 353 1 1186 164 41 0 chr12 25398645 25398889 -118387566 - L1MA8 LINE L1 -10 6281 6028 405 270 158 26 chr12 25400148 25400300 -118386155 - L2 LINE L2 0 3272 3101 302 144 11 44 chr12 25400797 25400887 -118385568 + GA-rich Low_complexity Low_complexity 2 88 0 722 254 116 65 chr12 25401816 25402186 -118384269 - L2 LINE L2 -2 3311 2923 206 275 11 88 chr12 25402234 25402325 -118384130 - MIR SINE MIR -50 212 129 660 257 18 37 chr12 25402556 25402774 -118383681 + L2 LINE L2 1482 1695 -1619 1067 148 0 0 chr12 25402780 25402929 -118383526 + AluSq/x SINE Alu 1 149 -164 310 104 0 0 chr12 25402929 25402977 -118383478 + Alu SINE Alu 247 294 -8 277 356 15 15 chr12 25402986 25403118 -118383337 + L2 LINE L2 1699 1830 -1484 1347 226 141 3 chr12 25403136 25403526 -118382929 + L2 LINE L2 2456 2899 -415 326 200 14 14 chr12 25403528 25403598 -118382857 + L2 LINE L2 3183 3252 -61 1437 188 30 30 chr12 25403600 25403685 -118382770 - MER2 DNA MER2_type 0 345 261 921 145 0 36 chr12 25403685 25403851 -118382604 + L1PA16 LINE L1 6006 6165 -1 1437 188 30 30 chr12 25403851 25404101 -118382354 - MER2 DNA MER2_type -83 262 10 2254 110 30 36 chr12 25404102 25404467 -118381988 - THE1B LTR MaLR -1 363 1 315 193 18 0 chr12 25404480 25404537 -118381918 + L2 LINE L2 3252 3309 -4 180 152 0 0 chr12 25405310 25405343 -118381112 + T-rich Low_complexity Low_complexity 1 33 0 199 406 62 0 chr12 25406024 25406120 -118380335 - L2 LINE L2 -210 3062 2961 205 161 0 0 chr12 25406662 25406693 -118379762 + polypurine Low_complexity Low_complexity 2 32 0 1432 184 24 51 chr12 25408570 25408863 -118377592 + AluJo SINE Alu 2 286 -26 1822 175 57 95 chr12 25409603 25410128 -118376327 - MLT1D LTR MaLR 0 505 1 215 280 0 0 chr12 25410464 25410514 -118375941 + (CA)n Simple_repeat Simple_repeat 1 50 0 433 286 71 76 chr12 25411344 25411534 -118374921 + L1ME LINE L1 5494 5684 -437 2421 91 0 9 chr12 25411534 25411876 -118374579 + L1PA8A LINE L1 5792 6130 -1 433 286 71 76 chr12 25411876 25411923 -118374532 + L1ME LINE L1 5684 5730 -391 858 291 99 24 chr12 25411930 25412304 -118374151 + MLT1J2 LTR MaLR 4 405 -45 225 307 63 24 chr12 25412704 25412831 -118373624 - L3 LINE CR1 -1 1576 1445 289 319 111 7 chr12 25412944 25413088 -118373367 - MIR SINE MIR -6 256 98 434 377 31 9 chr12 25413270 25413493 -118372962 + MIR SINE MIR 6 233 -29 1137 147 0 37 chr12 25414089 25414280 -118372175 + AluJb SINE Alu 124 307 -5 288 371 0 8 chr12 25414790 25414914 -118371541 - MER5B DNA MER1_type -49 129 7 25 0 0 0 chr12 25415144 25415169 -118371286 + AT_rich Low_complexity Low_complexity 1 25 0 537 286 56 0 chr12 25415241 25415402 -118371053 + MIR SINE MIR 20 189 -73 415 286 17 17 chr12 25415462 25415581 -118370874 + MIR SINE MIR 36 154 -108 386 306 134 25 chr12 25416004 25416399 -118370056 + LTR16A LTR ERVL 3 440 -10 240 250 0 29 chr12 25416828 25416896 -118369559 - LTR33A LTR ERVL -6 517 452 914 185 0 22 chr12 25417787 25417965 -118368490 - FAM SINE Alu -1 174 1 2425 73 0 7 chr12 25418521 25418824 -118367631 - AluSq SINE Alu -12 301 1 35 54 0 0 chr12 25419257 25419313 -118367142 + AT_rich Low_complexity Low_complexity 1 56 0 516 32 0 0 chr12 25421657 25421719 -118364736 + (TG)n Simple_repeat Simple_repeat 2 63 0 338 91 45 0 chr12 25423803 25423869 -118362586 - L1MD2 LINE L1 -3 6356 6288 1350 166 0 22 chr12 25423869 25424092 -118362363 + AluJo SINE Alu 87 304 -8 444 176 132 38 chr12 25424092 25424251 -118362204 - L1MD2 LINE L1 -61 6298 6125 371 303 181 0 chr12 25424294 25424449 -118362006 - MIR SINE MIR 0 262 80 1396 164 6 75 chr12 25424619 25424733 -118361722 + L1MC2 LINE L1 6021 6141 -203 1724 53 5 0 chr12 25424733 25424940 -118361515 + AluY SINE Alu 86 293 -18 1396 164 6 75 chr12 25424940 25425173 -118361282 + L1MC2 LINE L1 6141 6344 0 854 257 67 45 chr12 25426631 25427005 -118359450 - MLT1I LTR MaLR -2 407 26 31 26 0 0 chr12 25427413 25427451 -118359004 + AT_rich Low_complexity Low_complexity 1 38 0 640 168 40 27 chr12 25427546 25427695 -118358760 + L1MD1 LINE L1 6079 6229 -13 819 148 8 0 chr12 25427962 25428084 -118358371 + AluJb SINE Alu 9 131 -181 189 171 0 0 chr12 25428116 25428151 -118358304 + T-rich Low_complexity Low_complexity 1 35 0 771 318 120 21 chr12 25428158 25428592 -118357863 - L2 LINE L2 -17 3296 2820 242 208 21 0 chr12 25429448 25429496 -118356959 - L3b LINE CR1 -13 1570 1522 1178 171 9 36 chr12 25429707 25429929 -118356526 + AluJb SINE Alu 87 302 -10 2075 112 28 3 chr12 25429966 25430253 -118356202 - AluSc SINE Alu -15 294 1 27 0 0 0 chr12 25430639 25430666 -118355789 + AT_rich Low_complexity Low_complexity 1 27 0 1714 164 68 4 chr12 25430666 25430947 -118355508 - AluJo SINE Alu 0 312 14 211 288 55 14 chr12 25431034 25431107 -118355348 + L3b LINE CR1 1438 1513 -70 975 217 18 111 chr12 25431245 25431866 -118354589 + MER52A LTR ERV1 283 1448 -140 356 200 9 73 chr12 25431906 25432016 -118354439 + MER52A LTR ERV1 1653 1755 0 2397 108 0 0 chr12 25432573 25432878 -118353577 - AluSg SINE Alu -5 305 1 862 119 13 46 chr12 25432986 25433058 -118353397 + FAM SINE Alu 23 89 -232 2463 135 3 3 chr12 25433058 25433422 -118353033 - THE1B LTR MaLR 0 364 1 862 119 13 46 chr12 25433422 25433500 -118352955 + FAM SINE Alu 89 168 -17 435 208 28 47 chr12 25433533 25433639 -118352816 - MER5A DNA MER1_type -77 112 9 2041 157 48 43 chr12 25435779 25436200 -118350255 - MLT2C2 LTR ERVL -40 424 2 2402 87 3 0 chr12 25436738 25437038 -118349417 - AluSp SINE Alu -12 301 1 216 0 0 0 chr12 25437062 25437086 -118349369 + (T)n Simple_repeat Simple_repeat 1 24 0 5935 98 13 6 chr12 25437309 25438219 -118348236 - L1MA1 LINE L1 0 6302 5386 203 179 0 0 chr12 25443101 25443140 -118343315 + T-rich Low_complexity Low_complexity 1 39 0 1655 127 8 6 chr12 25444992 25445313 -118341142 - MER1B DNA MER1_type 0 339 59 238 217 170 47 chr12 25445568 25445674 -118340781 - L2 LINE L2 -4 3268 3150 765 236 55 0 chr12 25446734 25446899 -118339556 + MER5A DNA MER1_type 2 175 -14 686 295 26 34 chr12 25447231 25447465 -118338990 - MIR SINE MIR -19 243 12 223 250 0 0 chr12 25447855 25447899 -118338556 - MIR3 SINE MIR -49 159 116 279 306 31 31 chr12 25449941 25450039 -118336416 - L2 LINE L2 0 3272 3175 1729 157 32 32 chr12 25451337 25451521 -118334934 - AluJb SINE Alu 0 312 126 252 0 0 0 chr12 25451521 25451549 -118334906 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1729 157 32 32 chr12 25451549 25451676 -118334779 - AluJb SINE Alu -185 127 1 2016 145 119 13 chr12 25451808 25452195 -118334260 + MSTA LTR MaLR 1 428 0 483 118 0 0 chr12 25452534 25452610 -118333845 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1419 205 3 24 chr12 25452610 25452898 -118333557 - AluJo SINE Alu -26 286 5 3797 139 43 26 chr12 25453096 25453414 -118333041 - L1MA4 LINE L1 -3 6180 5869 225 0 0 0 chr12 25453414 25453439 -118333016 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr12 25453438 25453459 -118332996 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 3797 139 43 26 chr12 25453439 25453967 -118332488 - L1MA4 LINE L1 -314 5869 5285 * 5934 177 6 7 chr12 25453953 25454232 -118332223 - L1 LINE L1 -786 5360 5082 1627 217 0 0 chr12 25454232 25454509 -118331946 + AluJb SINE Alu 1 277 -35 5934 177 6 7 chr12 25454509 25455457 -118330998 - L1 LINE L1 -1064 5082 4135 2061 154 0 3 chr12 25455811 25456117 -118330338 + AluSx SINE Alu 1 305 -7 813 161 0 0 chr12 25456230 25456354 -118330101 - FLAM_C SINE Alu -9 124 1 447 224 79 35 chr12 25456805 25457026 -118329429 + L1ME4a LINE L1 5724 5934 -187 2104 116 0 3 chr12 25457026 25457368 -118329087 + AluSx SINE Alu 1 341 0 447 224 79 35 chr12 25457368 25457404 -118329051 + L1ME4a LINE L1 5934 5967 -154 2235 128 0 0 chr12 25457404 25457709 -118328746 + AluSq SINE Alu 1 305 -8 447 224 79 35 chr12 25457709 25457739 -118328716 + L1ME4a LINE L1 5967 6026 -95 354 45 0 0 chr12 25458075 25458119 -118328336 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 2149 132 86 37 chr12 25459305 25459402 -118327053 + Tigger2a DNA MER2_type 1 92 -2616 198 0 0 0 chr12 25459402 25459424 -118327031 + (TCC)n Simple_repeat Simple_repeat 2 23 0 2149 132 86 37 chr12 25459424 25459669 -118326786 + Tigger2a DNA MER2_type 92 369 -2339 1947 168 0 0 chr12 25459669 25459973 -118326482 + AluJb SINE Alu 1 304 -8 2149 132 86 37 chr12 25459973 25460038 -118326417 + Tigger2a DNA MER2_type 369 429 -5 1096 153 0 0 chr12 25460730 25460900 -118325555 + FAM SINE Alu 5 174 -1 186 226 151 19 chr12 25461310 25461363 -118325092 - MIR SINE MIR -119 143 84 2282 118 0 0 chr12 25461539 25461845 -118324610 + AluSx SINE Alu 1 306 -6 24 0 0 0 chr12 25461886 25461910 -118324545 + AT_rich Low_complexity Low_complexity 1 24 0 570 245 20 41 chr12 25461960 25462107 -118324348 - MIR SINE MIR -99 163 20 1635 156 44 60 chr12 25462113 25462428 -118324027 - AluJb SINE Alu -2 310 1 398 19 0 19 chr12 25463854 25463906 -118322549 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1680 176 3 11 chr12 25463909 25464193 -118322262 - AluJo SINE Alu -30 282 1 1040 99 6 22 chr12 25465096 25465277 -118321178 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 636 208 12 6 chr12 25465282 25465450 -118321005 + GA-rich Low_complexity Low_complexity 4 172 0 2194 93 45 0 chr12 25465739 25466029 -118320426 - AluSx SINE Alu -9 303 1 206 333 77 0 chr12 25466495 25466573 -118319882 + L2 LINE L2 3184 3267 -5 590 305 108 36 chr12 25467294 25467628 -118318827 - L2 LINE L2 -3 3310 2953 191 312 91 0 chr12 25467702 25467779 -118318676 + L2 LINE L2 3139 3222 -50 2091 104 32 29 chr12 25469923 25470231 -118316224 + AluSx SINE Alu 1 309 -3 508 199 84 15 chr12 25470826 25470957 -118315498 - MIR SINE MIR -26 236 97 198 0 0 0 chr12 25471502 25471524 -118314931 + (CATTA)n Simple_repeat Simple_repeat 4 25 0 2076 136 3 0 chr12 25471624 25471919 -118314536 + AluSx SINE Alu 1 296 -16 2272 77 0 11 chr12 25472448 25472760 -118313695 + AluSp SINE Alu 1 309 0 226 174 43 0 chr12 25472764 25472810 -118313645 + MLT1K LTR MaLR 539 586 -2 2551 43 10 0 chr12 25472919 25473220 -118313235 + AluY SINE Alu 1 304 -7 1958 139 0 13 chr12 25473233 25473535 -118312920 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr12 25473641 25473677 -118312778 + AT_rich Low_complexity Low_complexity 1 36 0 254 261 63 85 chr12 25473809 25473997 -118312458 + MIR3 SINE MIR 4 191 -71 676 186 0 0 chr12 25474081 25474199 -118312256 + FLAM_C SINE Alu 5 122 -11 319 249 205 44 chr12 25474942 25474955 -118311500 - MIR SINE MIR -19 243 233 770 162 270 5 chr12 25474955 25475140 -118311315 + MER46A DNA MER2_type 1 234 -2 319 249 205 44 chr12 25475140 25475331 -118311124 - MIR SINE MIR -29 233 6 663 281 114 5 chr12 25475338 25475494 -118310961 - MIR SINE MIR -12 250 64 1297 175 25 22 chr12 25475494 25475768 -118310687 - L1MC1 LINE L1 0 6333 6059 663 281 114 5 chr12 25475768 25475821 -118310634 - MIR SINE MIR -198 64 18 246 136 0 0 chr12 25475900 25475944 -118310511 + (GA)n Simple_repeat Simple_repeat 2 45 0 228 227 280 13 chr12 25476020 25476095 -118310360 + MER5B DNA MER1_type 1 95 -83 575 180 14 29 chr12 25476506 25476645 -118309810 - L1MC2 LINE L1 -12 6332 6196 264 51 51 0 chr12 25476646 25476685 -118309770 - L1MC2 LINE L1 -194 6150 6110 2235 167 10 5 chr12 25478808 25479209 -118307246 + MER57A LTR ERV1 1 403 0 1778 136 192 3 chr12 25480235 25480595 -118305860 + MSTA LTR MaLR 1 428 0 2486 172 17 8 chr12 25481432 25481903 -118304552 + L1PA16 LINE L1 5675 6149 -17 22 0 0 0 chr12 25481948 25481970 -118304485 + AT_rich Low_complexity Low_complexity 1 22 0 5167 134 36 19 chr12 25532878 25533729 -118252726 + MER41B-int LTR ERV1 5081 5946 0 3977 160 21 3 chr12 25533729 25534353 -118252102 + MER41B LTR ERV1 1 635 0 1742 197 53 22 chr12 25534358 25534812 -118251643 + MER72 LTR ERV1 157 722 0 272 284 142 16 chr12 25535239 25535366 -118251089 + MIR SINE MIR 102 244 -18 1723 195 0 3 chr12 25535696 25535994 -118250461 + AluJo SINE Alu 1 297 -15 684 227 134 6 chr12 25536042 25536214 -118250241 + MER58A DNA MER1_type 30 223 -1 1420 289 120 16 chr12 25536641 25537450 -118249005 + L2 LINE L2 1629 2521 -793 225 149 0 43 chr12 25537654 25537701 -118248754 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 22 35 0 0 chr12 25537701 25537730 -118248725 + AT_rich Low_complexity Low_complexity 1 29 0 4728 110 112 111 chr12 25537940 25539351 -118247104 + pTR5 LTR ERV1 741 2437 -1 1821 256 118 30 chr12 25539396 25539778 -118246677 + HsTC2c DNA Tc2 29 376 -1522 2246 104 0 0 chr12 25539778 25540077 -118246378 + AluSx SINE Alu 11 309 -3 1821 256 118 30 chr12 25540077 25540338 -118246117 + HsTC2c DNA Tc2 376 729 0 230 272 7 73 chr12 25540374 25540510 -118245945 + L1MC4a LINE L1 5809 5935 -1873 * 1172 238 83 60 chr12 25540508 25541273 -118245182 + L1ME LINE L1 4805 5586 -584 2250 132 52 3 chr12 25541273 25541600 -118244855 + MER61A LTR ERV1 1 343 0 1172 238 83 60 chr12 25541600 25541699 -118244756 + L1ME LINE L1 5586 5681 -489 348 83 0 0 chr12 25542027 25542075 -118244380 + (TG)n Simple_repeat Simple_repeat 2 49 0 187 149 21 21 chr12 25542300 25542347 -118244108 + (TATG)n Simple_repeat Simple_repeat 4 50 0 340 299 65 19 chr12 25542583 25542690 -118243765 + L2 LINE L2 3134 3245 -27 342 246 56 32 chr12 25542720 25542795 -118243660 + MIR SINE MIR 100 181 -81 2221 112 17 0 chr12 25542795 25543090 -118243365 + AluSx SINE Alu 1 300 -12 342 246 56 32 chr12 25543090 25543140 -118243315 + MIR SINE MIR 181 228 -34 1111 163 30 10 chr12 25545651 25545853 -118240602 - MER46A DNA MER2_type -6 230 25 2138 110 3 0 chr12 25546089 25546395 -118240060 + AluSx SINE Alu 1 307 0 241 313 62 0 chr12 25546741 25546821 -118239634 - MER5A DNA MER1_type -30 159 75 235 231 127 29 chr12 25547680 25547786 -118238669 + MER5A DNA MER1_type 65 183 -6 1926 157 25 25 chr12 25547914 25548271 -118238184 - MER47A DNA MER2_type -1 365 9 183 80 0 0 chr12 25548318 25548343 -118238112 + (A)n Simple_repeat Simple_repeat 1 25 0 1097 208 24 20 chr12 25548343 25548637 -118237818 + L1M4 LINE L1 3684 3978 -2168 1836 106 68 0 chr12 25548761 25549026 -118237429 + L1PA11 LINE L1 5891 6173 -1 307 277 0 0 chr12 25549850 25549915 -118236540 + MER58B DNA MER1_type 191 255 -86 1727 175 32 0 chr12 25549929 25550214 -118236241 + AluJb SINE Alu 1 294 -18 349 279 59 0 chr12 25550235 25550371 -118236084 - L1M4 LINE L1 -1053 5093 4950 330 183 28 14 chr12 25550376 25550447 -118236008 + MER58B DNA MER1_type 269 340 -1 594 128 34 151 chr12 25550794 25550973 -118235482 + L1MA4 LINE L1 6140 6297 -3 723 273 102 20 chr12 25551022 25551414 -118235041 + L1M4 LINE L1 4909 5332 -814 359 323 40 8 chr12 25551733 25551857 -118234598 + MIR3 SINE MIR 14 141 -67 1898 147 0 27 chr12 25552224 25552524 -118233931 + AluSx SINE Alu 1 292 -20 1777 154 26 13 chr12 25552888 25553193 -118233262 - AluJb SINE Alu -3 309 1 422 231 61 21 chr12 25554079 25554408 -118232047 + L1M4 LINE L1 2510 2951 -3195 21 36 0 0 chr12 25554512 25554540 -118231915 + AT_rich Low_complexity Low_complexity 1 28 0 1900 128 6 31 chr12 25554638 25554958 -118231497 - AluJb SINE Alu 0 312 1 1641 226 112 70 chr12 25554958 25555214 -118231241 + L1MC5 LINE L1 7001 7245 -716 547 138 0 12 chr12 25555214 25555294 -118231161 + MADE1 DNA Mariner 1 79 -1 1641 226 112 70 chr12 25555294 25555311 -118231144 + L1MC5 LINE L1 7245 7260 -701 201 39 0 0 chr12 25555311 25555337 -118231118 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1641 226 112 70 chr12 25555337 25555456 -118230999 + L1MC5 LINE L1 7260 7373 -588 2256 109 0 0 chr12 25555456 25555741 -118230714 + AluSq SINE Alu 1 285 -28 1641 226 112 70 chr12 25555741 25556143 -118230312 + L1MC5 LINE L1 7373 7830 -131 635 298 71 18 chr12 25556487 25556528 -118229927 - MIR SINE MIR -21 241 204 1468 184 6 95 chr12 25556528 25556696 -118229759 - AluSx SINE Alu -3 299 172 2420 92 0 0 chr12 25556696 25557002 -118229453 - AluSg SINE Alu -4 306 1 1468 184 6 95 chr12 25557002 25557159 -118229296 - AluSx SINE Alu -130 172 3 635 298 71 18 chr12 25557159 25557342 -118229113 - MIR SINE MIR -58 204 5 477 164 242 55 chr12 25557397 25557525 -118228930 + MSTA LTR MaLR 1 152 -223 633 141 41 16 chr12 25557527 25557648 -118228807 - LTR9 LTR ERV1 -2 610 487 574 322 123 45 chr12 25557783 25558271 -118228184 - L2 LINE L2 -17 3255 2736 818 166 25 55 chr12 25558286 25558475 -118227980 - AluJb SINE Alu 0 312 140 268 335 166 24 chr12 25558715 25559289 -118227166 - L2 LINE L2 -2502 812 158 205 290 16 0 chr12 25559521 25559583 -118226872 + L2 LINE L2 3001 3063 -209 2099 121 4 0 chr12 25559659 25559968 -118226487 - AluSx SINE Alu 0 310 1 2167 120 13 3 chr12 25560349 25560657 -118225798 + AluSx SINE Alu 1 311 -1 326 176 40 14 chr12 25560919 25560993 -118225462 - L1MC/D LINE L1 -2075 5733 5658 391 309 63 17 chr12 25562891 25563066 -118223389 - L2 LINE L2 -676 2638 2456 2086 100 0 11 chr12 25563072 25563353 -118223102 + AluSx SINE Alu 21 298 -14 1946 160 3 0 chr12 25564005 25564312 -118222143 + AluJb SINE Alu 1 308 -4 2526 57 0 0 chr12 25564496 25564797 -118221658 + AluY SINE Alu 1 301 -10 1711 158 42 3 chr12 25566354 25566638 -118219817 + AluSx SINE Alu 11 305 -7 2157 147 82 31 chr12 25567110 25567526 -118218929 - LTR23 LTR ERV1 0 437 1 405 0 0 0 chr12 25567961 25568006 -118218449 + (CA)n Simple_repeat Simple_repeat 1 45 0 763 162 22 22 chr12 25570787 25570923 -118215532 - FLAM_C SINE Alu -7 136 1 221 349 15 0 chr12 25570937 25571003 -118215452 + L2 LINE L2 3119 3185 -87 324 317 30 0 chr12 25571541 25571642 -118214813 - L2 LINE L2 -32 3240 3137 2445 159 11 16 chr12 25571666 25572106 -118214349 + L1MB7 LINE L1 5743 6180 -4 2167 103 26 10 chr12 25572107 25572409 -118214046 + AluSx SINE Alu 1 307 -5 1683 206 12 12 chr12 25572558 25572897 -118213558 - LTR27 LTR ERV1 0 636 298 505 164 19 9 chr12 25572904 25573021 -118213434 - MER61B LTR ERV1 -319 106 33 28 0 0 0 chr12 25573081 25573109 -118213346 + AT_rich Low_complexity Low_complexity 1 28 0 1599 157 85 24 chr12 25573164 25573458 -118212997 + AluJo SINE Alu 1 312 0 201 121 0 0 chr12 25574174 25574207 -118212248 + (CA)n Simple_repeat Simple_repeat 1 33 0 2524 63 3 0 chr12 25574343 25574646 -118211809 + AluY SINE Alu 1 304 -7 1264 150 4 64 chr12 25575605 25575791 -118210664 + MER20 DNA MER1_type 1 172 -47 2217 110 0 10 chr12 25575791 25576091 -118210364 + AluSx SINE Alu 1 297 -15 1264 150 4 64 chr12 25576091 25576137 -118210318 + MER20 DNA MER1_type 172 219 0 2283 115 19 43 chr12 25576165 25576538 -118209917 + THE1B LTR MaLR 1 364 0 1963 112 3 67 chr12 25576753 25577083 -118209372 - AluSq SINE Alu -4 309 1 1829 170 23 0 chr12 25577181 25577481 -118208974 + AluJb SINE Alu 3 309 -3 235 282 64 13 chr12 25577662 25577740 -118208715 + MLT1L LTR MaLR 215 296 -319 216 257 0 0 chr12 25577764 25577834 -118208621 + CT-rich Low_complexity Low_complexity 2 71 0 2209 74 20 34 chr12 25577908 25578206 -118208249 - AluSp SINE Alu -16 297 4 1813 168 3 0 chr12 25578210 25578520 -118207935 - AluJo SINE Alu 0 311 1 1012 128 34 34 chr12 25578520 25578699 -118207756 - L1MB1 LINE L1 -37 6131 5953 665 282 75 19 chr12 25578712 25578978 -118207477 + MLT1L LTR MaLR 322 602 -13 237 108 0 0 chr12 25579145 25579182 -118207273 + (TG)n Simple_repeat Simple_repeat 2 38 0 2127 122 30 3 chr12 25579224 25579528 -118206927 - AluSx SINE Alu 0 312 1 2367 106 0 0 chr12 25579752 25580055 -118206400 - AluSx SINE Alu -9 303 1 526 224 82 0 chr12 25580100 25580247 -118206208 + MIR SINE MIR 104 262 0 203 293 0 0 chr12 25580578 25580636 -118205819 + L2 LINE L2 754 811 -2503 196 303 0 15 chr12 25580637 25580703 -118205752 + MER5A DNA MER1_type 57 121 -68 16060 127 9 24 chr12 25580857 25581786 -118204669 + L1M1 LINE L1 13 954 -6611 2361 99 0 3 chr12 25581786 25582089 -118204366 + AluSg SINE Alu 1 302 -8 16060 127 9 24 chr12 25582089 25583561 -118202894 + L1M1 LINE L1 954 2378 -5187 3446 100 14 0 chr12 25583559 25584067 -118202388 + L1M1 LINE L1 2889 3403 -4162 * 3511 128 34 82 chr12 25584067 25584754 -118201701 + MER4A LTR ERV1 1 654 -10 1498 115 100 2 chr12 25584763 25585082 -118201373 + L1M1 LINE L1 3400 3753 -3812 2682 141 21 0 chr12 25585205 25585623 -118200832 + MER41B LTR ERV1 209 635 0 990 151 13 0 chr12 25585623 25585782 -118200673 + MER21A LTR ERV1 769 929 -2 364 259 65 50 chr12 25585788 25585927 -118200528 + MLT1G LTR MaLR 144 284 -306 672 157 0 0 chr12 25585968 25586076 -118200379 + MER41B LTR ERV1 202 309 -326 303 195 101 101 chr12 25586056 25586225 -118200230 + MLT1G LTR MaLR 338 506 -36 * 2349 75 0 29 chr12 25586445 25586753 -118199702 - AluY SINE Alu -12 299 1 387 0 0 0 chr12 25586756 25586799 -118199656 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 593 89 0 0 chr12 25586824 25586903 -118199552 - MER41B LTR ERV1 -556 79 1 424 178 41 0 chr12 25586903 25586969 -118199486 - MER21A LTR ERV1 -159 772 704 338 192 512 0 chr12 25587103 25587228 -118199227 + MER5A DNA MER1_type 1 189 0 1979 161 0 0 chr12 25587272 25587576 -118198879 + AluJo SINE Alu 1 304 -8 185 277 62 0 chr12 25587845 25587910 -118198545 + MIR SINE MIR 53 121 -141 229 270 95 0 chr12 25589264 25589338 -118197117 - Charlie8 DNA MER1_type -2306 111 31 2020 108 0 7 chr12 25589980 25590258 -118196197 + AluSc SINE Alu 31 306 -3 963 136 0 0 chr12 25590727 25590859 -118195596 - FLAM_C SINE Alu -11 132 1 616 216 151 11 chr12 25591005 25591190 -118195265 + MER58A DNA MER1_type 3 213 -11 2011 125 17 0 chr12 25591194 25591489 -118194966 + AluSq SINE Alu 1 300 -13 2236 124 0 0 chr12 25592252 25592558 -118193897 - AluSx SINE Alu -5 307 2 2155 117 44 0 chr12 25593226 25593524 -118192931 - AluSx SINE Alu -1 311 1 3990 112 19 52 chr12 25594048 25594745 -118191710 + L1MA4A LINE L1 5452 6125 -178 207 88 0 0 chr12 25594750 25594784 -118191671 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1510 192 19 23 chr12 25595013 25595320 -118191135 + AluJo SINE Alu 1 306 -6 2113 107 38 3 chr12 25595367 25595656 -118190799 + AluSx SINE Alu 1 299 -13 191 354 20 20 chr12 25595726 25595825 -118190630 + L2 LINE L2 3192 3290 -23 1992 137 0 0 chr12 25598911 25599211 -118187244 - AluSx SINE Alu -12 300 1 281 208 117 0 chr12 25599323 25599400 -118187055 + L2 LINE L2 2186 2271 -1043 184 367 51 10 chr12 25599645 25599743 -118186712 - L2 LINE L2 -206 3066 2965 1370 160 105 91 chr12 25599898 25600317 -118186138 - LTR37A LTR ERV1 -1 425 1 181 282 67 87 chr12 25600527 25600676 -118185779 - L2 LINE L2 -626 2688 2543 1234 189 9 5 chr12 25600700 25600917 -118185538 + AluJb SINE Alu 86 303 -9 313 321 114 11 chr12 25600922 25601193 -118185262 - L2 LINE L2 -819 2495 2197 237 169 93 110 chr12 25601205 25601323 -118185132 + MIR SINE MIR 110 225 -37 391 288 27 0 chr12 25601327 25601438 -118185017 - MER58A DNA MER1_type 0 114 1 848 135 21 13 chr12 25602104 25602268 -118184187 + LTR7 LTR ERV1 1 217 -233 913 133 0 20 chr12 25602501 25602652 -118183803 + LTR7 LTR ERV1 303 450 0 928 134 60 21 chr12 25602996 25603163 -118183292 + MER3 DNA MER1_type 1 134 -52 1850 156 3 17 chr12 25603163 25603464 -118182991 + AluJb SINE Alu 1 297 -15 928 134 60 21 chr12 25603464 25603481 -118182974 + MER3 DNA MER1_type 134 149 -37 389 268 156 11 chr12 25603558 25603737 -118182718 + MIR SINE MIR 58 262 0 734 251 132 8 chr12 25604157 25604408 -118182047 - MLT1C LTR MaLR 0 467 186 638 224 113 90 chr12 25604408 25604800 -118181655 + MLT1F LTR MaLR 138 538 -57 2138 108 0 11 chr12 25604800 25605135 -118181320 + AluSx SINE Alu 1 332 0 638 224 113 90 chr12 25605135 25605195 -118181260 + MLT1F LTR MaLR 538 595 0 1103 263 62 73 chr12 25605244 25605531 -118180924 - Charlie7 DNA MER1_type -125 2487 2198 2176 96 17 10 chr12 25605531 25605832 -118180623 + AluSx SINE Alu 1 303 -9 1103 263 62 73 chr12 25605832 25606298 -118180157 - Charlie7 DNA MER1_type -414 2198 39 1759 222 92 38 chr12 25606484 25606941 -118179514 - Charlie2b DNA MER1_type -1209 1573 1142 2375 67 0 20 chr12 25606941 25607240 -118179215 + AluY SINE Alu 1 293 -18 1759 222 92 38 chr12 25607240 25607291 -118179164 - Charlie2b DNA MER1_type -1640 1142 1095 935 150 0 0 chr12 25607291 25607424 -118179031 + FLAM_C SINE Alu 1 133 0 1759 222 92 38 chr12 25607424 25607522 -118178933 - Charlie2b DNA MER1_type -1687 1095 933 824 157 17 51 chr12 25607533 25607711 -118178744 - MER39B LTR ERV1 0 653 482 257 56 28 0 chr12 25607708 25607744 -118178711 + AluSq/x SINE Alu 99 135 -167 * 2662 112 18 15 chr12 25608350 25608751 -118177704 - MER39B LTR ERV1 -173 480 79 1504 199 7 11 chr12 25608792 25609074 -118177381 - AluSg SINE Alu -14 296 16 609 236 38 6 chr12 25609510 25609667 -118176788 + FAM SINE Alu 13 174 -11 240 163 0 0 chr12 25609813 25609856 -118176599 + (TG)n Simple_repeat Simple_repeat 1 43 0 2301 173 177 106 chr12 25610495 25611299 -118175156 + MER21B LTR ERV1 1 861 -2 209 32 0 32 chr12 25611359 25611390 -118175065 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 494 249 88 31 chr12 25611662 25611753 -118174702 - MIR SINE MIR -54 208 124 1853 147 65 37 chr12 25611753 25612107 -118174348 - THE1B LTR MaLR 0 364 1 494 249 88 31 chr12 25612107 25612208 -118174247 - MIR SINE MIR -138 124 5 259 224 24 71 chr12 25612989 25613074 -118173381 + Charlie2 DNA MER1_type 27 107 -2675 1198 134 20 111 chr12 25613124 25613450 -118173005 + LOR1-int LTR ERV1 4545 4853 -1410 191 35 0 35 chr12 25614122 25614151 -118172304 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 5238 135 27 47 chr12 25614179 25614344 -118172111 + LOR1-int LTR ERV1 3441 3608 -2723 2134 60 84 14 chr12 25614344 25614628 -118171827 + AluY SINE Alu 3 306 -5 5238 135 27 47 chr12 25614628 25614985 -118171470 + LOR1-int LTR ERV1 3608 3971 -2360 2038 106 0 7 chr12 25614985 25615310 -118171145 + AluSg SINE Alu 1 323 0 5238 135 27 47 chr12 25615310 25615654 -118170801 + LOR1-int LTR ERV1 3971 4320 -2011 2112 129 0 3 chr12 25615654 25615948 -118170507 - AluSx SINE Alu -19 293 1 5238 135 27 47 chr12 25615948 25616032 -118170423 + LOR1-int LTR ERV1 4320 5430 -901 23 0 0 0 chr12 25616666 25616689 -118169766 + AT_rich Low_complexity Low_complexity 1 23 0 3789 153 64 26 chr12 25616701 25617420 -118169035 + LOR1-int LTR ERV1 5422 6167 -164 2003 107 48 0 chr12 25617441 25617562 -118168893 + AluSp SINE Alu 1 115 -216 245 51 26 0 chr12 25617562 25617601 -118168854 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 2003 107 48 0 chr12 25617601 25617797 -118168658 + AluSp SINE Alu 115 331 0 1757 80 43 114 chr12 25617797 25617841 -118168614 - LTR24B LTR ERV1 -274 302 256 1575 177 30 10 chr12 25617841 25618141 -118168314 - AluJo SINE Alu -2 310 5 1757 80 43 114 chr12 25618141 25618421 -118168034 - LTR24B LTR ERV1 -320 256 1 315 330 94 35 chr12 25618711 25619050 -118167405 - HAL1 LINE L1 -2144 363 5 960 178 0 0 chr12 25619164 25619321 -118167134 - AluSg/x SINE Alu 0 310 154 11353 42 13 32 chr12 25619533 25620934 -118165521 - SVA Other Other -6 1380 7 2442 155 57 26 chr12 25620968 25621483 -118164972 - MLT2C2 LTR ERVL 0 520 2 928 256 32 26 chr12 25621755 25622196 -118164259 - L1MC4 LINE L1 -390 7652 7213 330 273 2 23 chr12 25622664 25622781 -118163674 + MIR SINE MIR 39 152 -81 1725 132 28 38 chr12 25622792 25623080 -118163375 + AluJb SINE Alu 1 285 -27 2985 149 61 16 chr12 25623178 25623613 -118162842 + MER68 LTR ERV1 1 464 -98 2218 97 3 3 chr12 25623613 25623911 -118162544 - AluSc SINE Alu -11 298 1 2985 149 61 16 chr12 25623911 25623984 -118162471 + MER68 LTR ERV1 464 532 -30 303 173 0 99 chr12 25623984 25624065 -118162390 + MIR SINE MIR 116 188 -74 1105 180 12 0 chr12 25624173 25624345 -118162110 + FAM SINE Alu 1 174 -1 240 163 0 0 chr12 25624491 25624534 -118161921 + (TG)n Simple_repeat Simple_repeat 1 43 0 713 175 487 13 chr12 25625173 25625401 -118161054 + MER21B LTR ERV1 1 336 -527 474 155 134 0 chr12 25625587 25625684 -118160771 + L1MA7 LINE L1 5459 5568 -723 701 234 0 14 chr12 25625702 25625843 -118160612 + AluJo SINE Alu 124 262 -50 211 70 23 23 chr12 25625846 25625889 -118160566 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 4217 129 33 19 chr12 25625889 25625936 -118160519 + L1MA7 LINE L1 5610 5655 -636 2018 175 12 15 chr12 25625936 25626273 -118160182 - MER1B DNA MER1_type 0 337 2 4217 129 33 19 chr12 25626273 25626894 -118159561 + L1MA7 LINE L1 5655 6287 -4 1858 236 126 70 chr12 25626979 25628164 -118158291 + L1ME3A LINE L1 3768 5018 -1128 230 158 24 73 chr12 25628313 25628395 -118158060 + L1ME3A LINE L1 5313 5390 -772 1773 154 49 0 chr12 25628398 25628683 -118157772 + AluJb SINE Alu 1 299 -13 1396 193 53 19 chr12 25628683 25629004 -118157451 - Charlie1 DNA MER1_type -910 1851 1520 709 135 0 0 chr12 25629007 25629111 -118157344 + FLAM_C SINE Alu 31 134 -9 1508 124 0 0 chr12 25629135 25629352 -118157103 + AluSg/x SINE Alu 93 309 -3 207 0 0 0 chr12 25629352 25629375 -118157080 + (TA)n Simple_repeat Simple_repeat 1 23 0 273 181 153 0 chr12 25629696 25629768 -118156687 + L1ME3A LINE L1 5887 5969 -201 290 337 47 21 chr12 25629806 25629999 -118156456 + L1ME3A LINE L1 5963 6160 -10 2071 125 34 0 chr12 25630490 25630785 -118155670 + AluSx SINE Alu 1 305 -7 308 346 47 0 chr12 25630786 25630893 -118155562 + L2 LINE L2 3201 3312 -1 3502 120 102 11 chr12 25630993 25631551 -118154904 + LTR9 LTR ERV1 1 609 -3 750 234 51 11 chr12 25631650 25631825 -118154630 + MLT1G1 LTR MaLR 6 187 -408 * 867 57 49 16 chr12 25631821 25631943 -118154512 + MER21A LTR ERV1 31 156 -775 773 169 0 42 chr12 25631973 25632115 -118154340 + FLAM_C SINE Alu 5 140 -3 249 220 40 0 chr12 25632115 25632165 -118154290 + MER21A LTR ERV1 213 264 -667 2212 164 37 35 chr12 25632168 25632563 -118153892 + MER21A LTR ERV1 377 772 -159 3452 133 4 0 chr12 25632563 25633073 -118153382 + MER41B LTR ERV1 1 512 -123 948 145 0 0 chr12 25633200 25633331 -118153124 - AluSg SINE Alu -179 131 1 2122 142 0 0 chr12 25633457 25633768 -118152687 + AluSq SINE Alu 1 311 -2 1282 243 78 18 chr12 25634276 25634671 -118151784 - L1MEc LINE L1 -5925 471 53 1896 158 3 3 chr12 25635128 25635425 -118151030 + AluJb SINE Alu 1 297 -15 595 292 0 0 chr12 25636497 25636651 -118149804 - MER63A DNA MER1_type 0 210 57 3194 142 26 17 chr12 25636666 25637199 -118149256 - MER61E LTR ERV1 -5 789 4 244 210 0 97 chr12 25637177 25637239 -118149216 - MER63A DNA MER1_type 0 57 2 * 510 252 7 7 chr12 25637523 25637662 -118148793 - LTR37B LTR ERV1 -2 466 328 2006 186 9 3 chr12 25637662 25638000 -118148455 + MER41D-int LTR ERV1 6256 6595 -81 251 83 0 0 chr12 25638088 25638124 -118148331 + MER41D-int LTR ERV1 7114 7149 -56 1882 163 0 0 chr12 25638124 25638412 -118148043 + AluJo SINE Alu 1 288 -24 1947 121 0 15 chr12 25638420 25638736 -118147719 + AluSx SINE Alu 15 326 0 940 219 31 0 chr12 25638816 25639008 -118147447 + MER41D LTR ERV1 1 198 -359 1858 201 41 0 chr12 25639046 25639440 -118147015 + MER41B LTR ERV1 138 547 -88 332 178 50 30 chr12 25639446 25639547 -118146908 - LTR37B LTR ERV1 -122 346 244 2570 124 89 2 chr12 25639938 25640332 -118146123 - MSTA LTR MaLR 0 428 1 2191 109 0 7 chr12 25640500 25640802 -118145653 - AluSx SINE Alu -12 300 1 565 227 80 0 chr12 25640878 25641028 -118145427 - MER20B DNA MER1_type -429 354 193 25 31 0 0 chr12 25641429 25641461 -118144994 + AT_rich Low_complexity Low_complexity 1 32 0 291 203 47 0 chr12 25641533 25641597 -118144858 + L2 LINE L2 3243 3309 -4 2183 106 0 0 chr12 25641707 25642023 -118144432 - AluSx SINE Alu 0 316 1 3030 151 43 17 chr12 25642171 25642700 -118143755 + LTR35 LTR ERV1 76 618 0 908 174 45 13 chr12 25642845 25643000 -118143455 + FRAM SINE Alu 1 160 -6 2169 116 0 19 chr12 25643003 25643314 -118143141 + AluSq SINE Alu 1 305 -8 989 109 23 0 chr12 25643433 25643561 -118142894 + FLAM_C SINE Alu 1 131 -2 813 279 37 25 chr12 25643817 25644061 -118142394 - MIR SINE MIR -8 254 8 1709 162 67 0 chr12 25644137 25644421 -118142034 - AluJb SINE Alu -9 303 1 1072 141 23 6 chr12 25644803 25644980 -118141475 + MER3 DNA MER1_type 2 181 -28 2654 43 0 0 chr12 25645250 25645551 -118140904 + AluY SINE Alu 1 301 -10 1607 168 31 3 chr12 25645719 25646005 -118140450 + AluJb SINE Alu 9 302 -10 1398 210 35 43 chr12 25646057 25646429 -118140026 + MLT1B LTR MaLR 22 390 0 189 0 0 0 chr12 25647163 25647184 -118139271 + (TATG)n Simple_repeat Simple_repeat 2 22 0 1214 160 19 123 chr12 25647184 25647376 -118139079 - AluJo SINE Alu -27 285 137 2100 96 38 14 chr12 25647376 25647668 -118138787 - AluSg SINE Alu 0 310 12 1214 160 19 123 chr12 25647668 25647793 -118138662 - AluJo SINE Alu -175 137 1 730 217 47 113 chr12 25648202 25648606 -118137849 + MLT1F1 LTR MaLR 55 534 -8 694 239 184 5 chr12 25648664 25648882 -118137573 - MIR SINE MIR -4 258 2 1837 201 91 3 chr12 25649052 25649415 -118137040 - MSTD LTR MaLR 0 396 2 1805 193 57 8 chr12 25649416 25649768 -118136687 - MSTD-int LTR MaLR 0 1735 1367 936 220 6 0 chr12 25649770 25649938 -118136517 + FAM SINE Alu 1 169 -16 2416 238 85 65 chr12 25649939 25650658 -118135797 - MSTD-int LTR MaLR -359 1376 644 2025 228 7 2 chr12 25650659 25651085 -118135370 - MSTD-int LTR MaLR -1306 429 2 1716 165 73 71 chr12 25651087 25651391 -118135064 - MSTD LTR MaLR 0 396 89 2579 62 0 0 chr12 25651391 25651696 -118134759 - AluY SINE Alu -6 305 1 1716 165 73 71 chr12 25651696 25651786 -118134669 - MSTD LTR MaLR -307 89 1 2262 105 0 13 chr12 25652272 25652578 -118133877 + AluSg SINE Alu 1 302 -8 474 214 143 89 chr12 25653368 25653538 -118132917 - L2 LINE L2 -1358 1956 1770 2059 121 0 27 chr12 25653538 25653835 -118132620 + AluSx SINE Alu 1 289 -23 474 214 143 89 chr12 25653835 25653888 -118132567 - L2 LINE L2 -1544 1770 1721 290 271 0 0 chr12 25653913 25653972 -118132483 - MLT-int LTR MaLR -752 983 925 4097 223 76 129 chr12 25653972 25654869 -118131586 + L2 LINE L2 800 1743 -1570 2315 102 3 0 chr12 25654869 25655174 -118131281 - AluSq SINE Alu -7 306 1 4097 223 76 129 chr12 25655174 25655712 -118130743 + L2 LINE L2 1743 2308 -1005 856 147 0 0 chr12 25655712 25655865 -118130590 - FLAM_C SINE Alu 0 153 1 4097 223 76 129 chr12 25655865 25655931 -118130524 + L2 LINE L2 2308 2376 -937 1678 143 31 17 chr12 25655931 25656224 -118130231 + L1MA8 LINE L1 5993 6289 -2 4097 223 76 129 chr12 25656224 25656308 -118130147 + L2 LINE L2 2376 2463 -850 642 176 80 40 chr12 25656308 25656433 -118130022 - FLAM_C SINE Alu -3 130 1 4097 223 76 129 chr12 25656433 25656713 -118129742 + L2 LINE L2 2463 2756 -557 1971 146 3 29 chr12 25656713 25657028 -118129427 - AluJb SINE Alu -5 307 1 4097 223 76 129 chr12 25657028 25657690 -118128765 + L2 LINE L2 2756 3313 0 2039 131 0 16 chr12 25657965 25658277 -118128178 - AluJb SINE Alu -3 309 3 503 279 61 35 chr12 25658759 25659071 -118127384 - L1MC4a LINE L1 -1854 5954 5635 226 272 114 22 chr12 25659308 25659492 -118126963 + L1MC/D LINE L1 5197 5397 -749 836 105 70 63 chr12 25659517 25659660 -118126795 - BC200 scRNA scRNA -51 149 6 777 227 87 0 chr12 25659664 25659836 -118126619 + L1MC/D LINE L1 5411 5597 -2211 1744 148 20 40 chr12 25659844 25660142 -118126313 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr12 25660392 25660413 -118126042 + AT_rich Low_complexity Low_complexity 1 21 0 938 273 80 22 chr12 25660440 25660803 -118125652 - LTR33 LTR ERVL -84 437 54 1762 126 20 0 chr12 25661149 25661396 -118125059 + AluSx SINE Alu 34 285 -27 1101 125 26 31 chr12 25661592 25661784 -118124671 - AluJ SINE Alu -2 310 120 24 0 0 0 chr12 25661786 25661810 -118124645 + AT_rich Low_complexity Low_complexity 1 24 0 851 20 0 0 chr12 25661810 25661908 -118124547 - SVA Other Other -1 1385 1288 1675 168 33 0 chr12 25661912 25662216 -118124239 - AluSp SINE Alu 0 313 1 861 259 29 13 chr12 25663254 25663493 -118122962 - MIR SINE MIR -1 261 19 1740 200 0 0 chr12 25663550 25663850 -118122605 + AluSx SINE Alu 1 300 -12 829 110 0 0 chr12 25663961 25664070 -118122385 - AluJ SINE Alu -201 111 3 914 154 20 56 chr12 25666541 25666736 -118119719 + MER53 DNA DNA 2 189 0 406 289 132 0 chr12 25666752 25666866 -118119589 + L2 LINE L2 3133 3261 -11 1698 169 4 4 chr12 25666915 25667194 -118119261 + AluSx SINE Alu 13 291 -21 868 146 28 14 chr12 25667233 25667377 -118119078 + FAM SINE Alu 24 169 -16 1241 159 0 56 chr12 25667976 25668208 -118118247 + AluJb SINE Alu 87 305 -7 2334 72 24 3 chr12 25668510 25668801 -118117654 - AluSg SINE Alu -13 297 1 295 269 10 48 chr12 25668960 25669064 -118117391 - LTR16A1 LTR ERVL -315 142 43 2179 129 3 0 chr12 25669372 25669681 -118116774 - AluSx SINE Alu -2 310 1 207 0 0 0 chr12 25670083 25670106 -118116349 + (CTAAT)n Simple_repeat Simple_repeat 5 27 0 646 194 37 30 chr12 25670115 25670249 -118116206 - AluJb SINE Alu -41 271 137 418 280 150 31 chr12 25670380 25670573 -118115882 + MIR SINE MIR 33 248 -14 630 283 143 0 chr12 25670654 25670877 -118115578 + MIR SINE MIR 8 262 0 183 208 0 42 chr12 25672278 25672326 -118114129 + L3 LINE CR1 622 667 -910 5243 145 39 0 chr12 25672518 25673618 -118112837 + L1PA16 LINE L1 5017 6166 0 329 274 59 15 chr12 25673631 25673766 -118112689 - L1ME4a LINE L1 -6 6115 5975 1310 231 108 67 chr12 25673874 25674276 -118112179 - L1MC5 LINE L1 -131 7830 7446 2259 109 0 0 chr12 25674276 25674561 -118111894 - AluSq SINE Alu -28 285 1 1310 231 108 67 chr12 25674561 25674680 -118111775 - L1MC5 LINE L1 -515 7446 7333 201 39 0 0 chr12 25674680 25674706 -118111749 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1310 231 108 67 chr12 25674706 25674723 -118111732 - L1MC5 LINE L1 -628 7333 7318 506 125 0 12 chr12 25674723 25674803 -118111652 - MADE1 DNA Mariner -1 79 1 1310 231 108 67 chr12 25674803 25675059 -118111396 - L1MC5 LINE L1 -643 7318 7001 838 148 7 7 chr12 25675059 25675194 -118111261 + AluJo SINE Alu 1 135 -177 2030 152 0 0 chr12 25675196 25675493 -118110962 + AluSx SINE Alu 1 297 -15 1941 155 0 10 chr12 25675761 25676051 -118110404 + AluJo SINE Alu 2 288 -24 1315 218 43 94 chr12 25676320 25676807 -118109648 - MLT2B1 LTR ERVL -58 462 1 1897 154 38 0 chr12 25676935 25677228 -118109227 + AluJb SINE Alu 2 305 -7 547 242 82 41 chr12 25677784 25677978 -118108477 - MIR SINE MIR -57 205 4 726 178 98 25 chr12 25678397 25678560 -118107895 - MER5A DNA MER1_type -14 175 1 2270 112 0 13 chr12 25678884 25679198 -118107257 - AluSx SINE Alu -2 310 1 1941 139 14 0 chr12 25679289 25679577 -118106878 + AluSx SINE Alu 5 296 -16 287 289 79 69 chr12 25679733 25679934 -118106521 + L1ME LINE L1 5425 5622 -499 1954 154 0 3 chr12 25679934 25680240 -118106215 + AluJo SINE Alu 1 305 -7 287 289 79 69 chr12 25680240 25680428 -118106027 + L1ME LINE L1 5622 5823 -298 2610 51 0 3 chr12 25680602 25680914 -118105541 - AluY SINE Alu 0 311 1 28 0 0 0 chr12 25680962 25680990 -118105465 + AT_rich Low_complexity Low_complexity 1 28 0 180 136 91 23 chr12 25681725 25681769 -118104686 + L2 LINE L2 3263 3309 -4 225 65 0 0 chr12 25681828 25681859 -118104596 + (A)n Simple_repeat Simple_repeat 1 31 0 2239 117 0 0 chr12 25682653 25682952 -118103503 + AluSx SINE Alu 1 299 -13 2155 110 52 0 chr12 25683220 25683511 -118102944 + AluSx SINE Alu 1 306 -6 2630 152 19 42 chr12 25684083 25684175 -118102280 - L1MB7 LINE L1 0 6184 6091 2156 156 0 0 chr12 25684175 25684482 -118101973 + AluSx SINE Alu 1 307 -5 2630 152 19 42 chr12 25684482 25684917 -118101538 - L1MB7 LINE L1 -93 6091 5669 1659 174 3 37 chr12 25684926 25685247 -118101208 - AluJo SINE Alu -2 310 1 390 222 17 26 chr12 25685433 25685550 -118100905 - LTR67 LTR ERVL -7 550 435 2863 193 76 63 chr12 25685719 25686534 -118099921 - LTR1B LTR ERV1 0 826 1 234 317 61 12 chr12 25686534 25686616 -118099839 + L2 LINE L2 3155 3240 -32 416 317 35 28 chr12 25686682 25686827 -118099628 + L2 LINE L2 3121 3266 -6 331 239 37 18 chr12 25686923 25687032 -118099423 - L1ME LINE L1 -323 5798 5688 518 250 43 7 chr12 25687058 25687198 -118099257 + L2 LINE L2 3160 3304 -9 1090 182 0 0 chr12 25687832 25688008 -118098447 - AluJb SINE Alu 0 312 137 533 299 64 0 chr12 25688727 25688914 -118097541 + MIR SINE MIR 15 213 -49 1842 149 14 0 chr12 25688981 25689257 -118097198 + AluSx SINE Alu 31 310 -2 2433 95 0 0 chr12 25689585 25689891 -118096564 + AluSq SINE Alu 3 308 -5 23 0 0 0 chr12 25690572 25690595 -118095860 + AT_rich Low_complexity Low_complexity 1 23 0 246 271 0 0 chr12 25691075 25691134 -118095321 + MIR SINE MIR 150 208 -54 1706 239 83 8 chr12 25691901 25692243 -118094212 - L2 LINE L2 -160 3153 2838 230 0 33 0 chr12 25692243 25692273 -118094182 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1706 239 83 8 chr12 25692273 25692532 -118093923 - L2 LINE L2 -475 2838 2505 2035 258 89 10 chr12 25692549 25692671 -118093784 - L2 LINE L2 -1879 1435 1324 953 184 8 98 chr12 25692671 25692916 -118093539 - MER58A DNA MER1_type -1 223 1 2035 258 89 10 chr12 25692916 25693421 -118093034 - L2 LINE L2 -1990 1324 758 3399 161 31 31 chr12 25693786 25694128 -118092327 - L1MB7 LINE L1 -10 6174 5833 2441 85 0 0 chr12 25694128 25694433 -118092022 - AluY SINE Alu -6 305 1 3399 161 31 31 chr12 25694433 25694656 -118091799 - L1MB7 LINE L1 -351 5833 5605 2108 121 3 0 chr12 25694656 25694964 -118091491 - AluSq SINE Alu 0 309 1 3399 161 31 31 chr12 25694964 25695102 -118091353 - L1MB7 LINE L1 -578 5606 5469 24 0 0 0 chr12 25695176 25695200 -118091255 + AT_rich Low_complexity Low_complexity 1 24 0 1304 188 6 113 chr12 25695651 25695971 -118090484 - AluJo SINE Alu -16 286 1 370 333 90 7 chr12 25696047 25696191 -118090264 + MIR SINE MIR 36 191 -71 967 178 0 22 chr12 25696407 25696587 -118089868 - FRAM SINE Alu -3 173 1 255 241 102 66 chr12 25696711 25696877 -118089578 + MIR SINE MIR 3 174 -88 2210 102 10 3 chr12 25697133 25697426 -118089029 - AluSx SINE Alu -17 295 1 207 288 34 0 chr12 25698060 25698119 -118088336 - L2 LINE L2 -9 3304 3244 2200 93 30 0 chr12 25698400 25698701 -118087754 - AluSp SINE Alu -3 310 1 1390 201 28 22 chr12 25699279 25699638 -118086817 - MLT1A1 LTR MaLR 0 365 5 2217 115 3 3 chr12 25699690 25699994 -118086461 - AluSg SINE Alu -6 304 1 553 205 87 25 chr12 25700215 25700376 -118086079 - Charlie8 DNA MER1_type -2193 224 54 261 294 33 11 chr12 25700398 25700490 -118085965 + L2 LINE L2 3146 3239 -33 207 224 20 20 chr12 25702923 25702972 -118083483 + L2 LINE L2 3193 3241 -31 2068 121 7 0 chr12 25704036 25704316 -118082139 - AluSx SINE Alu -8 304 23 2367 95 7 0 chr12 25705100 25705396 -118081059 + AluSx SINE Alu 1 298 -14 456 298 75 0 chr12 25705446 25705607 -118080848 - MIR3 SINE MIR 0 208 36 232 337 92 0 chr12 25705791 25705889 -118080566 + L2 LINE L2 3205 3311 -2 2520 48 0 0 chr12 25706174 25706468 -118079987 - AluY SINE Alu -16 295 2 440 214 20 41 chr12 25706658 25706756 -118079699 - MIR SINE MIR -147 115 20 1725 168 19 16 chr12 25706966 25707275 -118079180 + AluJo SINE Alu 1 310 -2 1103 262 89 14 chr12 25707595 25708097 -118078358 - L2 LINE L2 -74 3239 2702 202 263 125 0 chr12 25708128 25708208 -118078247 - L2 LINE L2 -600 2714 2625 1590 152 36 110 chr12 25708210 25708546 -118077909 - AluSx SINE Alu -1 311 1 245 254 0 0 chr12 25708631 25708694 -118077761 - MER112 DNA MER1_type -111 149 87 423 68 0 0 chr12 25708695 25708754 -118077701 + (TG)n Simple_repeat Simple_repeat 2 60 0 626 329 77 11 chr12 25708801 25709075 -118077380 - L2 LINE L2 -683 2631 2340 2287 89 0 3 chr12 25709212 25709504 -118076951 - AluSc SINE Alu -18 291 1 2324 279 63 38 chr12 25709762 25710680 -118075775 + L1MB1 LINE L1 1596 2536 -4950 11568 195 56 34 chr12 25710731 25714189 -118072266 + L1MB1 LINE L1 3083 6665 -922 6036 87 25 2 chr12 25714189 25715029 -118071426 - L1PA11 LINE L1 0 6174 5355 2267 94 7 19 chr12 25715029 25715336 -118071119 - AluSx SINE Alu -9 303 1 6036 87 25 2 chr12 25715336 25716199 -118070256 - L1PA11 LINE L1 -819 5355 4438 11568 195 56 34 chr12 25716199 25716434 -118070021 + L1MB1 LINE L1 6665 6893 -694 2409 72 13 3 chr12 25716444 25716748 -118069707 + AluY SINE Alu 1 307 -4 979 87 0 47 chr12 25716748 25716880 -118069575 + AluY SINE Alu 168 294 -17 4043 128 14 22 chr12 25716880 25716988 -118069467 + L1MB1 LINE L1 6896 7003 -584 2172 71 4 4 chr12 25716988 25717299 -118069156 + AluSc SINE Alu 1 311 0 4043 128 14 22 chr12 25717299 25717885 -118068570 + L1MB1 LINE L1 7003 7586 -1 979 87 0 47 chr12 25717885 25717901 -118068554 + AluY SINE Alu 294 309 -2 201 343 14 0 chr12 25718747 25718817 -118067638 + MIR3 SINE MIR 127 197 -11 198 0 0 0 chr12 25718944 25718966 -118067489 + (T)n Simple_repeat Simple_repeat 1 22 0 38 39 0 0 chr12 25720506 25720558 -118065897 + AT_rich Low_complexity Low_complexity 1 52 0 1002 108 0 0 chr12 25720690 25720820 -118065635 + AluJb SINE Alu 2 131 -181 2489 68 9 0 chr12 25722203 25722529 -118063926 - L1PA5 LINE L1 -5 6149 5821 377 371 0 0 chr12 25723159 25723299 -118063156 + MIR SINE MIR 3 142 -120 207 100 0 0 chr12 25723957 25723987 -118062468 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 2162 144 0 0 chr12 25723992 25724298 -118062157 - AluJo SINE Alu -6 306 1 2290 216 132 19 chr12 25724380 25725239 -118061216 - L1ME2 LINE L1 0 6164 5205 2182 114 0 10 chr12 25726094 25726393 -118060062 - AluSx SINE Alu -16 296 1 245 262 262 0 chr12 25727316 25727400 -118059055 + L3 LINE CR1 1440 1545 -32 1950 141 40 23 chr12 25727403 25727707 -118058748 - AluSx SINE Alu -3 309 1 1737 188 3 3 chr12 25727984 25728272 -118058183 + AluJb SINE Alu 3 290 -22 21 0 0 0 chr12 25728275 25728296 -118058159 + AT_rich Low_complexity Low_complexity 1 21 0 1974 89 43 0 chr12 25729834 25730091 -118056364 - AluSx SINE Alu -44 268 1 222 300 63 90 chr12 25730682 25730758 -118055697 - L2 LINE L2 0 3272 3195 653 150 108 0 chr12 25730758 25730878 -118055577 + FLAM_C SINE Alu 1 133 0 222 300 63 90 chr12 25730878 25731133 -118055322 - L2 LINE L2 -77 3195 2881 2150 146 0 0 chr12 25731547 25731856 -118054599 + AluSx SINE Alu 1 309 -3 735 176 13 13 chr12 25731857 25732010 -118054445 - MIR SINE MIR -24 238 86 499 306 7 28 chr12 25732015 25732159 -118054296 - MIR SINE MIR -120 142 2 842 213 85 38 chr12 25732284 25732425 -118054030 - MER58A DNA MER1_type -2198 222 66 1858 155 42 0 chr12 25732425 25732709 -118053746 - AluJb SINE Alu -16 296 1 842 213 85 38 chr12 25732709 25732778 -118053677 - MER58A DNA MER1_type -2354 66 2 219 209 30 0 chr12 25732839 25732906 -118053549 + (TTA)n Simple_repeat Simple_repeat 2 70 0 2078 125 44 0 chr12 25733393 25733689 -118052766 - AluSx SINE Alu -3 309 1 2931 201 38 68 chr12 25733981 25734389 -118052066 - MER21B LTR ERV1 -1 862 488 1609 192 14 0 chr12 25734389 25734574 -118051881 - AluJb SINE Alu 0 320 128 2320 111 0 0 chr12 25734574 25734880 -118051575 - AluSx SINE Alu -6 306 1 1609 192 14 0 chr12 25734880 25735008 -118051447 - AluJb SINE Alu -192 128 3 2931 201 38 68 chr12 25735008 25735441 -118051014 - MER21B LTR ERV1 -375 488 44 338 253 13 0 chr12 25735440 25735515 -118050940 - MER21B LTR ERV1 -769 94 19 * 4106 181 18 34 chr12 25736837 25737753 -118048702 - L1MB7 LINE L1 -11 6173 5273 1790 115 40 0 chr12 25737854 25738107 -118048348 + AluSq SINE Alu 43 305 -8 447 297 8 24 chr12 25738317 25738449 -118048006 - MIR SINE MIR -48 160 31 2260 112 3 3 chr12 25738661 25738974 -118047481 + AluSq SINE Alu 1 313 0 26 50 0 0 chr12 25739327 25739367 -118047088 + AT_rich Low_complexity Low_complexity 1 40 0 182 286 116 18 chr12 25739814 25739926 -118046529 + MIR3 SINE MIR 82 204 -4 189 264 57 0 chr12 25740055 25740108 -118046347 + L2 LINE L2 3251 3306 -7 701 184 72 43 chr12 25740513 25740720 -118045735 + L1MC5 LINE L1 7701 7913 -48 378 301 103 19 chr12 25740750 25740906 -118045549 + MIR SINE MIR 23 191 -71 468 51 0 0 chr12 25742246 25742305 -118044150 + (TG)n Simple_repeat Simple_repeat 2 60 0 1524 219 23 7 chr12 25743601 25743903 -118042552 - AluJo SINE Alu 0 312 6 691 36 0 87 chr12 25743938 25744133 -118042322 + (TA)n Simple_repeat Simple_repeat 2 179 0 37 39 0 0 chr12 25744160 25744211 -118042244 + AT_rich Low_complexity Low_complexity 1 51 0 251 373 71 8 chr12 25744357 25744483 -118041972 + L2 LINE L2 3134 3267 -5 300 279 91 32 chr12 25744800 25744954 -118041501 + MIR SINE MIR 49 211 -51 28 71 0 0 chr12 25745226 25745282 -118041173 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 25746598 25746634 -118039821 + AT_rich Low_complexity Low_complexity 1 36 0 2498 74 0 3 chr12 25747079 25747391 -118039064 - AluY SINE Alu 0 311 1 754 290 39 23 chr12 25747547 25747680 -118038775 + L1MC4a LINE L1 5421 5550 -2258 1688 147 45 33 chr12 25747680 25747920 -118038535 - MER44D DNA MER2_type -1883 608 372 2416 52 0 7 chr12 25747920 25748206 -118038249 + AluY SINE Alu 1 284 -27 1688 147 45 33 chr12 25748206 25748298 -118038157 - MER44D DNA MER2_type -2119 372 2 754 290 39 23 chr12 25748298 25748471 -118037984 + L1MC4a LINE L1 5550 5732 -2076 303 296 75 44 chr12 25748474 25748633 -118037822 + L1MC4a LINE L1 5777 5940 -1868 1066 173 51 46 chr12 25748659 25748856 -118037599 - AluJo SINE Alu -37 275 78 2003 149 3 3 chr12 25749057 25749386 -118037069 + AluJb SINE Alu 1 329 0 329 319 67 8 chr12 25750305 25750498 -118035957 - MIR SINE MIR -54 208 8 1783 198 0 6 chr12 25750845 25751158 -118035297 + AluJo SINE Alu 1 311 -1 252 0 0 0 chr12 25751280 25751308 -118035147 + (TG)n Simple_repeat Simple_repeat 2 29 0 535 187 9 9 chr12 25751521 25751628 -118034827 + MER2 DNA MER2_type 7 113 -232 3053 205 28 66 chr12 25751629 25752488 -118033967 - LTR1B LTR ERV1 0 826 1 794 184 184 10 chr12 25752492 25752688 -118033767 + MER2 DNA MER2_type 116 345 0 874 296 156 39 chr12 25752877 25753653 -118032802 - L2 LINE L2 -665 2649 1783 2307 115 0 0 chr12 25753895 25754207 -118032248 - AluSx SINE Alu 0 312 1 1679 171 33 21 chr12 25754396 25754729 -118031726 + MER1B DNA MER1_type 1 337 0 379 191 122 82 chr12 25755265 25755412 -118031043 + MIR SINE MIR 6 158 -104 552 218 56 7 chr12 25755505 25755647 -118030808 + MIR SINE MIR 114 262 0 279 316 11 42 chr12 25755724 25755819 -118030636 - MIR SINE MIR -159 103 12 252 226 0 0 chr12 25755914 25755976 -118030479 + (TTA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chr12 25756326 25756352 -118030103 + AT_rich Low_complexity Low_complexity 1 26 0 1830 138 0 83 chr12 25756975 25757301 -118029154 + AluJo SINE Alu 1 299 -13 3730 171 64 20 chr12 25757868 25758683 -118027772 - L1MB2 LINE L1 -2 6169 5319 21 0 0 0 chr12 25758691 25758712 -118027743 + AT_rich Low_complexity Low_complexity 1 21 0 2126 124 7 10 chr12 25758724 25758857 -118027598 + AluSx SINE Alu 1 133 -179 2272 107 0 0 chr12 25758857 25759155 -118027300 + AluSq SINE Alu 1 298 -15 2126 124 7 10 chr12 25759155 25759327 -118027128 + AluSx SINE Alu 133 305 -7 6354 212 25 48 chr12 25760639 25762583 -118023872 - L1MB2 LINE L1 -821 5325 3440 387 295 16 0 chr12 25762900 25763029 -118023426 + MER104 DNA Tc2 39 169 -11 21 36 0 0 chr12 25763951 25763979 -118022476 + AT_rich Low_complexity Low_complexity 1 28 0 293 296 67 22 chr12 25764058 25764281 -118022174 - L1ME4a LINE L1 -217 5904 5672 611 236 147 23 chr12 25764494 25764752 -118021703 - HAL1 LINE L1 0 2507 2218 4596 263 111 32 chr12 25764752 25766453 -118020002 + L2 LINE L2 968 2802 -512 2439 88 0 3 chr12 25766459 25766765 -118019690 + AluSg SINE Alu 1 305 -5 1175 166 28 63 chr12 25766765 25767189 -118019266 + L1M3 LINE L1 5323 5704 -476 1421 275 126 33 chr12 25767215 25767876 -118018579 - HAL1 LINE L1 -1784 723 2 874 301 82 39 chr12 25769197 25769612 -118016843 - MLT1J LTR MaLR -78 433 1 394 337 88 6 chr12 25769629 25769810 -118016645 - MIR3 SINE MIR -3 205 10 24 53 0 0 chr12 25769867 25769905 -118016550 + AT_rich Low_complexity Low_complexity 1 38 0 253 122 0 0 chr12 25770390 25770431 -118016024 + L1ME LINE L1 5541 5581 -540 217 333 0 67 chr12 25771754 25771811 -118014644 + MIR3 SINE MIR 68 116 -92 2621 46 0 0 chr12 25771811 25772115 -118014340 - AluY SINE Alu -7 304 1 217 333 0 67 chr12 25772115 25772162 -118014293 + MIR3 SINE MIR 116 165 -43 248 259 0 0 chr12 25773009 25773063 -118013392 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 442 177 34 11 chr12 25773067 25773242 -118013213 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 71 0 0 chr12 25773479 25773521 -118012934 + AT_rich Low_complexity Low_complexity 1 42 0 1228 151 43 0 chr12 25773956 25774188 -118012267 + Tigger7 DNA MER2_type 2246 2487 0 506 139 5 233 chr12 25775764 25775966 -118010489 - L2 LINE L2 0 3313 3158 981 152 0 18 chr12 25776126 25776290 -118010165 - FRAM SINE Alu -5 161 1 2274 109 3 0 chr12 25776424 25776717 -118009738 - AluSp SINE Alu -19 294 1 1027 237 92 58 chr12 25777014 25777675 -118008780 + L2 LINE L2 2622 3304 -9 369 290 73 24 chr12 25777913 25778037 -118008418 - L2 LINE L2 -1 3271 3142 27 29 0 0 chr12 25778426 25778460 -118007995 + AT_rich Low_complexity Low_complexity 1 34 0 2573 69 0 0 chr12 25779139 25779445 -118007010 - AluY SINE Alu -5 306 1 871 187 101 0 chr12 25779463 25779672 -118006783 - MER33 DNA MER1_type -94 230 1 257 296 23 11 chr12 25779892 25779980 -118006475 + MIR3 SINE MIR 108 196 -12 2190 104 0 0 chr12 25780006 25780339 -118006116 - AluSg SINE Alu 0 333 1 918 168 37 14 chr12 25780423 25780637 -118005818 - L1MB8 LINE L1 -6 6172 5954 2313 83 23 0 chr12 25780678 25780978 -118005477 - AluSx SINE Alu -5 307 1 635 213 52 11 chr12 25782021 25782195 -118004260 - L1MB8 LINE L1 -41 6137 5957 1759 190 66 0 chr12 25782211 25782605 -118003850 + L1ME LINE L1 5278 5697 -469 191 382 42 61 chr12 25782608 25782820 -118003635 + L2 LINE L2 3001 3208 -64 1914 141 32 0 chr12 25783250 25783534 -118002921 - AluSq SINE Alu -20 293 1 2015 137 3 10 chr12 25783667 25783973 -118002482 - AluJb SINE Alu -8 304 1 24 32 0 0 chr12 25784067 25784098 -118002357 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 25784402 25784424 -118002031 + AT_rich Low_complexity Low_complexity 1 22 0 2226 88 30 13 chr12 25784667 25784972 -118001483 - AluSx SINE Alu -2 310 1 2089 127 3 0 chr12 25785003 25785302 -118001153 - AluSx SINE Alu -12 300 1 2024 113 0 30 chr12 25785304 25785604 -118000851 - AluSx SINE Alu -19 293 3 266 303 133 30 chr12 25786282 25786447 -118000008 - MIR SINE MIR -74 188 7 347 113 16 0 chr12 25787020 25787082 -117999373 + (GA)n Simple_repeat Simple_repeat 1 63 0 2582 29 3 13 chr12 25787180 25787491 -117998964 + AluY SINE Alu 1 308 -3 212 278 30 107 chr12 25787579 25787624 -117998831 + MER5A DNA MER1_type 11 42 -147 473 248 218 0 chr12 25787624 25787757 -117998698 - MER5A DNA MER1_type -2 187 26 673 201 106 56 chr12 25787804 25787983 -117998472 - MER5A DNA MER1_type -1 188 1 1034 216 42 0 chr12 25787992 25788205 -117998250 + MER58A DNA MER1_type 3 224 0 1558 181 66 7 chr12 25788923 25789211 -117997244 + AluJo SINE Alu 1 305 -7 320 260 135 103 chr12 25789502 25789910 -117996545 + L1ME4a LINE L1 5697 6117 -4 23 0 0 0 chr12 25790306 25790329 -117996126 + AT_rich Low_complexity Low_complexity 1 23 0 329 276 20 20 chr12 25790496 25790594 -117995861 + MIR SINE MIR 47 144 -64 270 0 0 0 chr12 25790772 25790802 -117995653 + (TG)n Simple_repeat Simple_repeat 1 30 0 358 318 139 55 chr12 25791087 25791356 -117995099 - L2 LINE L2 0 3313 3068 6402 93 26 12 chr12 25791356 25792802 -117993653 - L1PA14 LINE L1 0 6161 4702 358 318 139 55 chr12 25792802 25793470 -117992985 - L2 LINE L2 -245 3068 2308 24 0 0 0 chr12 25794022 25794046 -117992409 + AT_rich Low_complexity Low_complexity 1 24 0 345 307 59 15 chr12 25794071 25794273 -117992182 - L1M4 LINE L1 -1367 4779 4569 255 263 80 45 chr12 25794544 25794768 -117991687 + L1M4 LINE L1 4798 5029 -1117 285 250 0 0 chr12 25795103 25795163 -117991292 + L2 LINE L2 2183 2242 -1072 797 333 177 13 chr12 25795262 25795811 -117990644 + L2 LINE L2 2259 2897 -417 369 294 65 24 chr12 25795995 25796165 -117990290 + L2 LINE L2 3135 3311 -2 182 271 180 49 chr12 25796337 25796459 -117989996 + L2 LINE L2 2912 3049 -223 2331 113 3 0 chr12 25796490 25796801 -117989654 - AluSp SINE Alu -1 312 1 2241 71 0 0 chr12 25796995 25797332 -117989123 + AluY SINE Alu 1 337 0 424 331 176 25 chr12 25798548 25798793 -117987662 - L2 LINE L2 -1 3271 2990 323 354 148 15 chr12 25799133 25799458 -117986997 - L1MC4a LINE L1 -1933 5875 5508 238 261 106 0 chr12 25799522 25799683 -117986772 - L1MC4a LINE L1 -771 5375 5198 1456 189 84 3 chr12 25800726 25801011 -117985444 - AluJo SINE Alu -4 308 1 2385 109 0 0 chr12 25801092 25801396 -117985059 - AluSx SINE Alu -8 304 1 9402 94 70 2 chr12 25801689 25804358 -117982097 + L1PBa LINE L1 1 2925 -3938 2150 120 3 16 chr12 25805654 25805962 -117980493 - AluSx SINE Alu -8 304 1 358 277 87 22 chr12 25805996 25806227 -117980228 + HAL1 LINE L1 1076 1321 -1186 1298 258 63 45 chr12 25806265 25806947 -117979508 + HAL1 LINE L1 1425 2118 -389 383 306 170 5 chr12 25806967 25807282 -117979173 + L2 LINE L2 2726 3146 -167 1586 157 0 90 chr12 25807419 25807560 -117978895 - AluSx SINE Alu -38 274 173 2411 92 0 0 chr12 25807560 25807866 -117978589 - AluSg SINE Alu -4 306 1 1586 157 0 90 chr12 25807866 25808024 -117978431 - AluSx SINE Alu -139 173 2 607 271 99 0 chr12 25808025 25808206 -117978249 - MIR SINE MIR -59 203 5 1365 155 122 62 chr12 25808261 25808391 -117978064 + THE1C LTR MaLR 1 122 -253 3733 101 87 7 chr12 25808391 25808956 -117977499 - LTR9 LTR ERV1 -2 610 1 1365 155 122 62 chr12 25808956 25809179 -117977276 + THE1C LTR MaLR 122 375 0 237 268 0 56 chr12 25809188 25809259 -117977196 + L2 LINE L2 3247 3313 0 2215 97 4 0 chr12 25809309 25809588 -117976867 - AluSq SINE Alu -12 301 22 193 235 10 61 chr12 25810165 25810263 -117976192 + L2 LINE L2 2540 2632 -682 2040 213 34 48 chr12 25810280 25810927 -117975528 - MLT1D-int LTR MaLR -732 639 2 242 246 0 0 chr12 25810939 25810996 -117975459 - MLT1D LTR MaLR -12 493 437 1806 156 39 3 chr12 25810996 25811278 -117975177 - AluSx SINE Alu -20 292 1 254 276 29 38 chr12 25811857 25811962 -117974493 - L1ME3A LINE L1 -104 6066 5963 240 181 153 0 chr12 25812000 25812072 -117974383 - L1ME3A LINE L1 -201 5969 5887 270 0 0 0 chr12 25812393 25812423 -117974032 + (TA)n Simple_repeat Simple_repeat 1 30 0 2092 138 6 6 chr12 25812423 25812735 -117973720 - AluSx SINE Alu 0 312 1 2283 116 0 0 chr12 25812919 25813229 -117973226 - AluJb SINE Alu -2 310 1 306 208 117 0 chr12 25813341 25813418 -117973037 + L2 LINE L2 2186 2271 -1043 6097 140 19 24 chr12 25814190 25815263 -117971192 + L1M1 LINE L1 1250 2316 -5249 985 141 23 6 chr12 25815473 25815650 -117970805 + MER3 DNA MER1_type 2 181 -28 2227 78 0 7 chr12 25815920 25816237 -117970218 + AluY SINE Alu 1 315 0 294 203 47 0 chr12 25816347 25816411 -117970044 - L2 LINE L2 -4 3309 3243 25 31 0 0 chr12 25816483 25816515 -117969940 + AT_rich Low_complexity Low_complexity 1 32 0 487 225 63 0 chr12 25816915 25817057 -117969398 + MER20B DNA MER1_type 193 343 -440 2267 106 0 7 chr12 25817141 25817443 -117969012 + AluSx SINE Alu 1 300 -12 209 277 62 0 chr12 25817712 25817777 -117968678 + MIR SINE MIR 53 121 -141 197 336 52 35 chr12 25817927 25818043 -117968412 - MIR SINE MIR -61 147 30 7830 134 14 39 chr12 26018356 26019753 -117766702 + THE1C-int LTR MaLR 219 1580 0 1616 174 64 25 chr12 26019753 26020114 -117766341 + THE1C LTR MaLR 1 375 0 4580 153 50 41 chr12 26020478 26020591 -117765864 - L1MA9 LINE L1 -30 6282 6171 342 0 0 0 chr12 26020591 26020629 -117765826 + (TG)n Simple_repeat Simple_repeat 1 38 0 4580 153 50 41 chr12 26020629 26021467 -117764988 - L1MA9 LINE L1 -141 6171 5321 2118 113 0 26 chr12 26021467 26021769 -117764686 - AluSg SINE Alu -16 294 1 4580 153 50 41 chr12 26021769 26021998 -117764457 - L1MA9 LINE L1 -991 5321 5096 700 301 124 13 chr12 26022668 26022974 -117763481 + L2 LINE L2 2957 3296 -17 247 320 147 0 chr12 26023168 26023318 -117763137 + L3 LINE CR1 804 975 -602 7338 37 7 7 chr12 26023387 26024811 -117761644 + L1PA6 LINE L1 4732 6154 0 467 294 242 4 chr12 26024895 26025147 -117761308 + L3 LINE CR1 1188 1499 -78 181 301 0 86 chr12 26025867 26025960 -117760495 + L2 LINE L2 3176 3260 -12 581 297 82 30 chr12 26025978 26026281 -117760174 + L2 LINE L2 2579 2897 -417 212 304 131 84 chr12 26026282 26026429 -117760026 + L2 LINE L2 3024 3188 -84 1980 121 0 7 chr12 26026429 26026719 -117759736 + AluSg SINE Alu 1 288 -22 212 304 131 84 chr12 26026719 26026808 -117759647 + L2 LINE L2 3188 3271 -1 554 147 0 10 chr12 26027221 26027323 -117759132 + (TG)n Simple_repeat Simple_repeat 2 102 0 2029 109 0 7 chr12 26027332 26027617 -117758838 - AluSq SINE Alu -30 283 1 22 35 0 0 chr12 26032891 26032920 -117753535 + AT_rich Low_complexity Low_complexity 1 29 0 1756 170 13 26 chr12 26033001 26033307 -117753148 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr12 26033511 26033533 -117752922 + AT_rich Low_complexity Low_complexity 1 22 0 186 186 136 17 chr12 26034756 26034815 -117751640 - MER5A DNA MER1_type -114 75 10 515 153 119 119 chr12 26034831 26035008 -117751447 + MER3 DNA MER1_type 1 130 -79 201 317 0 49 chr12 26035367 26035449 -117751006 + MIR3 SINE MIR 107 184 -24 1898 163 7 13 chr12 26037372 26037679 -117748776 + AluJb SINE Alu 1 305 -7 186 184 0 0 chr12 26038229 26038267 -117748188 + L2 LINE L2 3210 3247 -25 23 0 0 0 chr12 26038355 26038378 -117748077 + AT_rich Low_complexity Low_complexity 1 23 0 456 286 103 49 chr12 26038445 26038669 -117747786 + MIR SINE MIR 22 257 -5 201 286 78 26 chr12 26038901 26038978 -117747477 + MIR3 SINE MIR 109 189 -19 180 111 0 0 chr12 26039492 26039519 -117746936 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 23 33 0 0 chr12 26039597 26039627 -117746828 + AT_rich Low_complexity Low_complexity 1 30 0 283 310 26 9 chr12 26039963 26040079 -117746376 - L2 LINE L2 -4 3309 3192 2402 66 0 0 chr12 26040874 26041162 -117745293 + AluY SINE Alu 1 288 -23 286 211 0 0 chr12 26041257 26041309 -117745146 + MLT1I LTR MaLR 358 409 0 23 68 0 0 chr12 26041376 26041420 -117745035 + AT_rich Low_complexity Low_complexity 1 44 0 234 223 125 9 chr12 26041536 26041648 -117744807 + L1ME4a LINE L1 5985 6109 -12 189 213 0 0 chr12 26042509 26042556 -117743899 + (TG)n Simple_repeat Simple_repeat 2 48 0 7196 46 9 0 chr12 26042831 26044089 -117742366 + L1PA5 LINE L1 4886 6151 -3 234 0 0 0 chr12 26044097 26044123 -117742332 + (CA)n Simple_repeat Simple_repeat 1 26 0 264 292 0 0 chr12 26044756 26044821 -117741634 + L2 LINE L2 3206 3270 -2 2124 113 10 0 chr12 26045020 26045320 -117741135 - AluSx SINE Alu -9 303 1 183 42 0 0 chr12 26046468 26046492 -117739963 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 417 239 26 8 chr12 26047586 26047703 -117738752 + MER103 DNA DNA 3 121 -45 1086 189 41 19 chr12 26047996 26048266 -117738189 - L1MA10 LINE L1 -133 6201 5926 970 122 0 6 chr12 26048371 26048527 -117737928 + L1P LINE L1 4110 4264 -1882 1868 216 39 14 chr12 26048980 26049420 -117737035 - MER82 DNA MER2_type 0 653 203 467 178 9 19 chr12 26049713 26049820 -117736635 - MER82 DNA MER2_type -449 204 99 411 253 117 26 chr12 26049970 26050124 -117736331 - MIR SINE MIR -21 241 74 191 281 62 31 chr12 26050662 26050726 -117735729 + MIR SINE MIR 34 99 -163 2377 77 3 3 chr12 26051140 26051439 -117735016 + AluY SINE Alu 1 299 -12 2184 100 0 14 chr12 26052165 26052505 -117733950 + AluSq SINE Alu 1 336 0 1137 196 104 14 chr12 26053036 26053316 -117733139 - MER54B LTR ERVL -3 790 486 768 144 8 16 chr12 26054541 26054666 -117731789 - FLAM_C SINE Alu -7 126 3 350 272 106 7 chr12 26054736 26054872 -117731583 - MIR SINE MIR -66 196 49 223 232 36 0 chr12 26055103 26055159 -117731296 + L2 LINE L2 2356 2413 -901 21 89 0 0 chr12 26055375 26055431 -117731024 + AT_rich Low_complexity Low_complexity 1 56 0 1311 202 143 12 chr12 26057182 26057603 -117728852 - L1ME3A LINE L1 -8 6162 5687 359 312 19 80 chr12 26057623 26057934 -117728521 + L2 LINE L2 2613 2904 -410 214 317 73 0 chr12 26058091 26058173 -117728282 + L2 LINE L2 3179 3266 -6 28 29 0 0 chr12 26058479 26058514 -117727941 + AT_rich Low_complexity Low_complexity 1 35 0 310 258 67 0 chr12 26059517 26059606 -117726849 + L1MC4 LINE L1 6609 6703 -1339 359 266 179 59 chr12 26059639 26060080 -117726375 - L1M2 LINE L1 -5738 1111 595 24 100 0 0 chr12 26060549 26060629 -117725826 + GC_rich Low_complexity Low_complexity 1 80 0 335 225 153 27 chr12 26061823 26061934 -117724521 - L2 LINE L2 -3 3310 3186 725 275 74 85 chr12 26062084 26062602 -117723853 + L2 LINE L2 2841 3312 -1 183 100 100 0 chr12 26062701 26062731 -117723724 - L2 LINE L2 -21 3251 3219 393 267 112 17 chr12 26063221 26063337 -117723118 + L2 LINE L2 3137 3263 -9 222 296 121 8 chr12 26063336 26063468 -117722987 + L2 LINE L2 2543 2689 -625 * 2126 100 3 32 chr12 26063478 26063789 -117722666 - AluSg SINE Alu -8 302 1 311 232 0 0 chr12 26064028 26064097 -117722358 + L2 LINE L2 2987 3055 -217 804 274 29 29 chr12 26064621 26064898 -117721557 - MER102a DNA MER1_type -22 308 32 339 287 0 23 chr12 26065566 26065653 -117720802 + L2 LINE L2 3225 3309 -4 605 180 18 9 chr12 26067206 26067317 -117719138 + MER5A DNA MER1_type 1 112 -77 2299 80 0 17 chr12 26068104 26068404 -117718051 + AluY SINE Alu 1 295 -16 432 0 0 0 chr12 26070639 26070687 -117715768 + (TG)n Simple_repeat Simple_repeat 2 49 0 404 226 52 26 chr12 26071990 26072105 -117714350 - MER97a DNA MER1_type? -718 176 59 2013 108 25 51 chr12 26072355 26072670 -117713785 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 26072714 26072735 -117713720 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr12 26072821 26072880 -117713575 + AT_rich Low_complexity Low_complexity 1 59 0 261 97 35 44 chr12 26073314 26073427 -117713028 + (TA)n Simple_repeat Simple_repeat 1 112 0 247 223 58 8 chr12 26073427 26073548 -117712907 + (TTATA)n Simple_repeat Simple_repeat 5 131 0 296 165 44 11 chr12 26073663 26073754 -117712701 + (TA)n Simple_repeat Simple_repeat 1 94 0 219 152 24 42 chr12 26073762 26073927 -117712528 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 1353 96 101 0 chr12 26074774 26074983 -117711472 - MER30 DNA MER1_type 0 230 1 392 319 48 18 chr12 26075351 26075517 -117710938 - MIR SINE MIR -81 181 11 239 224 0 0 chr12 26075554 26075603 -117710852 - Charlie8 DNA MER1_type -1930 487 439 837 215 47 6 chr12 26078316 26078488 -117707967 + MER58A DNA MER1_type 19 197 -27 24 53 0 0 chr12 26079245 26079283 -117707172 + AT_rich Low_complexity Low_complexity 1 38 0 234 171 0 0 chr12 26081560 26081595 -117704860 + L2 LINE L2 3264 3298 -15 3335 205 101 18 chr12 26081934 26082578 -117703877 - L1MB8 LINE L1 -6 6172 5583 2182 109 0 0 chr12 26082578 26082861 -117703594 + AluSx SINE Alu 17 299 -13 3335 205 101 18 chr12 26082861 26083379 -117703076 - L1MB8 LINE L1 -595 5583 4918 * 3589 220 58 20 chr12 26083374 26083717 -117702738 - L1MB8 LINE L1 -1617 4529 4201 2431 56 0 20 chr12 26083717 26084022 -117702433 - AluY SINE Alu -12 299 1 3589 220 58 20 chr12 26084022 26084329 -117702126 - L1MB8 LINE L1 -1945 4201 3907 2274 82 0 10 chr12 26084329 26084623 -117701832 - AluY SINE Alu -20 291 1 3589 220 58 20 chr12 26084623 26084967 -117701488 - L1MB8 LINE L1 -2239 3907 3496 778 188 0 0 chr12 26084997 26085130 -117701325 + FLAM_C SINE Alu 1 133 -10 5395 207 106 36 chr12 26085632 26086250 -117700205 - L1M4c LINE L1 -4621 2517 1944 2220 80 10 29 chr12 26086250 26086561 -117699894 + AluSp SINE Alu 1 305 -8 5395 207 106 36 chr12 26086561 26087872 -117698583 - L1M4c LINE L1 -5194 1944 309 679 186 0 0 chr12 26087872 26087985 -117698470 - MSTC LTR MaLR -315 113 1 940 217 42 0 chr12 26087985 26088197 -117698258 - L1M4c LINE L1 -6636 223 3 483 319 69 5 chr12 26088321 26088525 -117697930 - MIR SINE MIR -26 236 20 22 56 0 0 chr12 26088613 26088649 -117697806 + AT_rich Low_complexity Low_complexity 1 36 0 916 257 134 42 chr12 26088857 26089261 -117697194 - MLT1D LTR MaLR 0 505 65 26 30 0 0 chr12 26089554 26089587 -117696868 + AT_rich Low_complexity Low_complexity 1 33 0 465 34 0 0 chr12 26089673 26089732 -117696723 + (CA)n Simple_repeat Simple_repeat 2 60 0 243 289 57 31 chr12 26089843 26090002 -117696453 + MARNA DNA Mariner 20 182 -404 30 59 0 0 chr12 26090908 26090959 -117695496 + AT_rich Low_complexity Low_complexity 1 51 0 1038 210 114 80 chr12 26091380 26092024 -117694431 + LTR41 LTR ERVL 19 761 -12 24 0 0 0 chr12 26092154 26092178 -117694277 + AT_rich Low_complexity Low_complexity 1 24 0 219 173 19 0 chr12 26093047 26093099 -117693356 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1974 138 7 10 chr12 26094074 26094372 -117692083 - AluJb SINE Alu -15 297 1 323 354 76 0 chr12 26094914 26095058 -117691397 + MER117 DNA MER1_type 1 155 -42 21 0 0 0 chr12 26095643 26095664 -117690791 + AT_rich Low_complexity Low_complexity 1 21 0 1921 147 20 3 chr12 26096320 26096620 -117689835 + AluJo SINE Alu 1 305 -7 897 267 50 8 chr12 26096978 26097218 -117689237 - MIR SINE MIR -11 251 2 192 255 21 0 chr12 26097261 26097308 -117689147 - L2 LINE L2 -9 3263 3216 1717 156 37 71 chr12 26097397 26097775 -117688680 - MLT1A1 LTR MaLR 0 365 1 271 290 111 31 chr12 26098763 26098925 -117687530 - MER96 DNA MER1_type? 0 175 1 1363 239 239 4 chr12 26099243 26099779 -117686676 + L2 LINE L2 1554 2215 -1099 701 229 16 33 chr12 26099779 26099962 -117686493 - MER20B DNA MER1_type -602 181 2 216 207 0 103 chr12 26100276 26100334 -117686121 + MIR SINE MIR 19 70 -138 2214 91 7 0 chr12 26101013 26101300 -117685155 - AluY SINE Alu -19 292 4 201 323 141 21 chr12 26101596 26101788 -117684667 + L2 LINE L2 2877 3091 -181 2149 115 42 76 chr12 26102015 26102425 -117684030 + MSTB1 LTR MaLR 34 429 -3 542 223 18 0 chr12 26102585 26102697 -117683758 - MER94 DNA DNA 0 134 21 248 239 80 106 chr12 26102839 26103027 -117683428 - MIR SINE MIR -48 214 32 216 0 0 0 chr12 26104106 26104130 -117682325 + (CA)n Simple_repeat Simple_repeat 2 25 0 691 203 0 0 chr12 26104290 26104413 -117682042 - FLAM_C SINE Alu -10 133 11 2066 121 57 6 chr12 26104560 26104892 -117681563 + Tigger2 DNA MER2_type 2370 2718 0 2039 151 0 0 chr12 26105101 26105400 -117681055 - AluJb SINE Alu -13 299 1 27 29 0 0 chr12 26105503 26105537 -117680918 + AT_rich Low_complexity Low_complexity 1 34 0 1681 151 0 0 chr12 26105892 26106177 -117680278 + L1 LINE L1 3704 3988 -2158 543 188 51 0 chr12 26106176 26106293 -117680162 + L1 LINE L1 4878 5000 -1146 * 1072 151 5 0 chr12 26106368 26106553 -117679902 + L1 LINE L1 3991 4176 -1970 1776 104 4 8 chr12 26106561 26106801 -117679654 - AluSg SINE Alu -71 239 1 2217 123 3 0 chr12 26106835 26107144 -117679311 - AluSq SINE Alu -3 310 1 4282 126 58 15 chr12 26107185 26107922 -117678533 + Tigger3b DNA MER2_type 1 769 -462 26 30 0 0 chr12 26107946 26107979 -117678476 + AT_rich Low_complexity Low_complexity 1 33 0 719 156 0 16 chr12 26107980 26108102 -117678353 + FLAM_A SINE Alu 20 139 -3 1161 139 27 5 chr12 26108130 26108317 -117678138 + AluJb SINE Alu 120 310 -2 2586 141 34 5 chr12 26108317 26108764 -117677691 + Tigger3b DNA MER2_type 772 1231 0 21 82 0 0 chr12 26108777 26108826 -117677629 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr12 26108883 26108907 -117677548 + AT_rich Low_complexity Low_complexity 1 24 0 898 165 136 23 chr12 26109653 26109829 -117676626 - AluJb SINE Alu -116 196 1 229 281 195 8 chr12 26110176 26110304 -117676151 + L2 LINE L2 3143 3294 -19 2179 98 10 0 chr12 26110649 26110945 -117675510 + AluSq SINE Alu 2 300 -13 213 94 0 0 chr12 26111806 26111838 -117674617 + (CA)n Simple_repeat Simple_repeat 2 33 0 475 259 0 0 chr12 26114874 26114986 -117671469 - L2 LINE L2 -5 3308 3197 1963 103 75 0 chr12 26115117 26115398 -117671057 - AluSc SINE Alu -7 302 1 462 315 50 22 chr12 26115800 26115981 -117670474 - MIR3 SINE MIR -2 206 21 37 23 0 0 chr12 26116168 26116212 -117670243 + AT_rich Low_complexity Low_complexity 1 44 0 225 255 0 0 chr12 26116393 26116440 -117670015 + (CA)n Simple_repeat Simple_repeat 1 47 0 1586 156 132 12 chr12 26116977 26117303 -117669152 + MLT1A1 LTR MaLR 1 365 0 317 324 214 0 chr12 26117447 26117592 -117668863 - MER5A DNA MER1_type 0 189 14 2251 110 0 0 chr12 26117667 26117967 -117668488 + AluSc SINE Alu 3 302 -7 1221 114 0 0 chr12 26117971 26118129 -117668326 + AluSp SINE Alu 130 287 -26 25 65 0 0 chr12 26118139 26118185 -117668270 + AT_rich Low_complexity Low_complexity 1 46 0 199 405 42 0 chr12 26118220 26118388 -117668067 + L2 LINE L2 2194 2368 -946 276 392 0 0 chr12 26118509 26118606 -117667849 - MIR SINE MIR -59 149 53 342 283 0 0 chr12 26119390 26119482 -117666973 + L1MC4a LINE L1 6503 6594 -1214 479 308 37 71 chr12 26119493 26119847 -117666608 - L1MEc LINE L1 -6018 378 37 825 175 18 102 chr12 26119850 26120182 -117666273 + L1MC4 LINE L1 7732 8035 -7 295 185 0 0 chr12 26120200 26120254 -117666201 + MLT1D LTR MaLR 72 125 -442 796 156 6 78 chr12 26120256 26120436 -117666019 + L1MD3 LINE L1 7410 7576 -419 2395 88 0 0 chr12 26120441 26120738 -117665717 + AluSx SINE Alu 1 297 -15 524 188 4 195 chr12 26121036 26121292 -117665163 + MLT1D LTR MaLR 254 460 -45 712 267 48 0 chr12 26121376 26121582 -117664873 - L2 LINE L2 -266 3047 2832 211 269 129 54 chr12 26122491 26122584 -117663871 + L2 LINE L2 3169 3268 -4 1469 200 33 33 chr12 26123286 26123651 -117662804 - MLT1A1 LTR MaLR 0 365 1 446 243 64 17 chr12 26124032 26124173 -117662282 + MIR SINE MIR 33 182 -26 342 289 84 30 chr12 26124257 26124423 -117662032 + MIR SINE MIR 23 197 -65 206 194 0 32 chr12 26124890 26124952 -117661503 + T-rich Low_complexity Low_complexity 2 61 0 289 280 13 0 chr12 26125192 26125267 -117661188 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 26125370 26125395 -117661060 + (T)n Simple_repeat Simple_repeat 1 25 0 301 260 110 50 chr12 26125697 26125797 -117660658 - L2 LINE L2 0 3272 3167 2066 124 3 13 chr12 26125841 26126156 -117660299 + AluSx SINE Alu 1 312 0 569 235 46 0 chr12 26126691 26126864 -117659591 + L1MCa LINE L1 1731 2025 -4532 1488 208 139 41 chr12 26127022 26127059 -117659396 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 26127059 26127143 -117659312 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1488 208 139 41 chr12 26127143 26127572 -117658883 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 26127795 26127841 -117658614 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3494 186 84 56 chr12 26128510 26129487 -117656968 + MER45B DNA AcHobo 2 1005 -35 344 261 52 52 chr12 26129807 26129960 -117656495 - MIR3 SINE MIR -25 183 31 198 269 0 75 chr12 26130282 26130349 -117656106 - L3 LINE CR1 -1 1576 1515 28 79 0 0 chr12 26130594 26130657 -117655798 + AT_rich Low_complexity Low_complexity 1 63 0 287 158 287 40 chr12 26132884 26132985 -117653470 - MIR SINE MIR -132 130 5 246 300 12 0 chr12 26135312 26135392 -117651063 + MER20B DNA MER1_type 3 83 -700 2213 140 64 21 chr12 26135433 26135868 -117650587 + L1M2 LINE L1 5296 5749 -542 312 342 187 0 chr12 26136017 26136172 -117650283 - MIR SINE MIR -1 261 78 592 170 104 130 chr12 26136962 26137164 -117649291 - MER20B DNA MER1_type -3 780 585 208 70 47 0 chr12 26137164 26137207 -117649248 + (TA)n Simple_repeat Simple_repeat 2 46 0 592 170 104 130 chr12 26137207 26137274 -117649181 - MER20B DNA MER1_type -198 585 518 553 298 28 9 chr12 26137367 26137585 -117648870 - MER20B DNA MER1_type -267 516 295 843 198 45 0 chr12 26137597 26137754 -117648701 + AluJb SINE Alu 145 308 -4 248 289 0 40 chr12 26137807 26137883 -117648572 - MER20B DNA MER1_type -596 187 115 1596 127 50 65 chr12 26137913 26138331 -117648124 - L1MA7 LINE L1 -6 6285 5874 693 131 29 52 chr12 26138667 26138832 -117647623 + THE1C LTR MaLR 201 350 -25 1478 115 3 90 chr12 26138856 26139186 -117647269 - MER4A LTR ERV1 -42 622 263 2319 96 0 3 chr12 26139212 26139514 -117646941 + AluSx SINE Alu 10 310 -2 342 261 0 43 chr12 26139674 26139862 -117646593 + T-rich Low_complexity Low_complexity 1 180 0 342 227 113 18 chr12 26140937 26141091 -117645364 + AluSq/x SINE Alu 2 105 -198 21 0 0 0 chr12 26143591 26143612 -117642843 + AT_rich Low_complexity Low_complexity 1 21 0 502 272 83 12 chr12 26145429 26145598 -117640857 - MIR SINE MIR -71 191 11 242 258 175 31 chr12 26145613 26145710 -117640745 + L2 LINE L2 3203 3313 0 1621 224 131 17 chr12 26146032 26146452 -117640003 + MLT1F LTR MaLR 3 470 -72 24 0 0 0 chr12 26147407 26147431 -117639024 + AT_rich Low_complexity Low_complexity 1 24 0 347 292 64 17 chr12 26147862 26147996 -117638459 - MIR SINE MIR -62 146 38 2281 103 0 34 chr12 26149721 26150041 -117636414 + AluSg SINE Alu 1 309 -1 2214 72 14 0 chr12 26150648 26150924 -117635531 + AluSp SINE Alu 1 280 -33 249 57 0 0 chr12 26150928 26150963 -117635492 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 325 256 122 0 chr12 26151480 26151562 -117634893 + MIR SINE MIR 54 145 -63 618 258 72 19 chr12 26151860 26152069 -117634386 - MIR SINE MIR -29 233 14 199 328 172 0 chr12 26152170 26152298 -117634157 + MIR SINE MIR 107 256 -6 509 266 28 0 chr12 26152873 26152982 -117633473 - L3 LINE CR1 -422 1155 1044 1955 139 0 4 chr12 26153240 26153521 -117632934 + AluSc SINE Alu 1 280 -29 1468 178 3 60 chr12 26153521 26153819 -117632636 + AluJo SINE Alu 20 300 -12 329 267 62 54 chr12 26154265 26154505 -117631950 - MER112 DNA MER1_type -2 258 17 457 295 134 55 chr12 26154507 26155452 -117631003 - L1MEd LINE L1 -5096 1023 4 596 309 96 11 chr12 26155474 26155756 -117630699 - L3 LINE CR1 -635 942 637 2237 155 42 39 chr12 26156282 26156740 -117629715 + LTR32 LTR ERVL 13 471 0 742 230 119 25 chr12 26158136 26158371 -117628084 + MIR SINE MIR 2 258 -4 193 272 86 95 chr12 26158431 26158663 -117627792 + L2 LINE L2 1878 2107 -1207 181 274 36 95 chr12 26158872 26158956 -117627499 - L3 LINE CR1 -505 1072 994 2627 137 42 148 chr12 26161078 26161787 -117624668 - MER51A LTR ERV1 0 634 1 331 331 92 48 chr12 26162567 26162839 -117623616 + L2 LINE L2 2832 3115 -157 2046 174 25 8 chr12 26163941 26164298 -117622157 - MLT1A1 LTR MaLR -2 363 1 329 305 6 85 chr12 26164366 26164530 -117621925 - MIR SINE MIR -74 134 25 783 148 0 0 chr12 26164712 26164834 -117621621 + FRAM SINE Alu 37 158 -18 507 198 83 56 chr12 26164835 26165001 -117621454 + L1ME3A LINE L1 5806 5973 -197 352 267 67 29 chr12 26165232 26165442 -117621013 - L1ME4a LINE L1 -206 5915 5698 22 35 0 0 chr12 26165489 26165518 -117620937 + AT_rich Low_complexity Low_complexity 1 29 0 200 94 0 31 chr12 26166280 26166312 -117620143 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 212 319 217 13 chr12 26167251 26167408 -117619047 - L2 LINE L2 -572 2742 2554 499 227 108 49 chr12 26168215 26168418 -117618037 + L2 LINE L2 2490 2704 -610 718 233 119 10 chr12 26168452 26168654 -117617801 - MIR SINE MIR -27 235 12 946 288 88 15 chr12 26168668 26169182 -117617273 + L2 LINE L2 2713 3251 -62 2302 88 0 10 chr12 26169239 26169522 -117616933 + AluSx SINE Alu 1 302 -10 198 33 33 0 chr12 26169522 26169552 -117616903 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 2302 88 0 10 chr12 26169552 26169563 -117616892 + AluSx SINE Alu 302 312 0 367 299 159 19 chr12 26169567 26169838 -117616617 - L2 LINE L2 -1293 2021 1713 2465 171 61 2 chr12 26170815 26171375 -117615080 + L1ME1 LINE L1 4849 5437 -729 409 176 12 26 chr12 26171376 26171632 -117614823 + AluJo SINE Alu 1 302 0 2590 221 54 26 chr12 26171660 26172231 -117614224 + L1ME1 LINE L1 5460 6055 -111 1920 134 34 0 chr12 26172231 26172523 -117613932 + AluSx SINE Alu 5 306 -6 2590 221 54 26 chr12 26172523 26172634 -117613821 + L1ME1 LINE L1 6055 6161 -5 2348 80 3 0 chr12 26172643 26172929 -117613526 + AluY SINE Alu 1 287 -24 25 0 0 0 chr12 26172929 26172954 -117613501 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 26174883 26174905 -117611550 + AT_rich Low_complexity Low_complexity 1 22 0 825 167 8 0 chr12 26175156 26175288 -117611167 + FLAM_A SINE Alu 1 133 0 209 115 58 58 chr12 26175310 26175362 -117611093 - L2 LINE L2 0 3313 3262 331 270 138 5 chr12 26176145 26176334 -117610121 - MIR SINE MIR -12 250 37 44 106 0 0 chr12 26178744 26178914 -117607541 + GC_rich Low_complexity Low_complexity 1 170 0 205 250 22 22 chr12 26179045 26179137 -117607318 + (CGGGG)n Simple_repeat Simple_repeat 2 93 0 245 49 73 0 chr12 26179204 26179245 -117607210 + (CCGGG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr12 26179296 26179328 -117607127 + GC_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr12 26179350 26179390 -117607065 + GC_rich Low_complexity Low_complexity 1 40 0 189 258 263 5 chr12 26180552 26180738 -117605717 + L2 LINE L2 1776 2009 -1305 2487 72 7 0 chr12 26180745 26181051 -117605404 + AluSp SINE Alu 1 308 -5 927 163 112 86 chr12 26181800 26182033 -117604422 - MLT1D LTR MaLR -63 442 204 1649 187 142 3 chr12 26182422 26182796 -117603659 + MSTB LTR MaLR 1 426 0 2291 170 21 0 chr12 26183202 26183590 -117602865 + MER57A LTR ERV1 8 403 0 3741 195 11 71 chr12 26183590 26184113 -117602342 + MER57A-int LTR ERV1 1 450 -7087 2208 96 3 0 chr12 26184113 26184425 -117602030 + AluSq SINE Alu 1 313 0 3741 195 11 71 chr12 26184425 26184803 -117601652 + MER57A-int LTR ERV1 450 849 -6688 1635 161 69 11 chr12 26184839 26185113 -117601342 + AluJo SINE Alu 9 298 -14 2251 123 0 19 chr12 26185193 26185509 -117600946 + AluSg SINE Alu 1 310 0 492 277 0 21 chr12 26185516 26185657 -117600798 + MER57A-int LTR ERV1 851 988 -4135 715 220 136 44 chr12 26185657 26185907 -117600548 + MER34C LTR ERV1 155 427 -158 2650 57 0 0 chr12 26185962 26186278 -117600177 + AluYb8 SINE Alu 1 316 -2 270 171 61 37 chr12 26186282 26186364 -117600091 + MER57A-int LTR ERV1 1110 1193 -3678 * 345 215 0 56 chr12 26186339 26186446 -117600009 + MER57A-int LTR ERV1 1299 1399 -3724 2293 198 62 101 chr12 26186526 26187248 -117599207 + LTR8A LTR ERV1 34 727 0 954 162 27 194 chr12 26187273 26187368 -117599087 + MER31-int LTR ERV1 3141 3250 -3081 1106 178 50 157 chr12 26187368 26187577 -117598878 - AluJo SINE Alu 0 302 141 243 0 0 0 chr12 26187577 26187604 -117598851 + (TA)n Simple_repeat Simple_repeat 2 28 0 1106 178 50 157 chr12 26187604 26187732 -117598723 - AluJo SINE Alu -161 141 1 954 162 27 194 chr12 26187732 26187807 -117598648 + MER31-int LTR ERV1 3250 3336 -2995 1979 137 22 0 chr12 26187807 26188119 -117598336 - AluSq SINE Alu 0 318 1 954 162 27 194 chr12 26188119 26188322 -117598133 + MER31-int LTR ERV1 3336 3453 -2878 480 246 53 19 chr12 26188435 26188642 -117597813 + MER31-int LTR ERV1 1709 1922 -3014 1897 149 14 3 chr12 26188694 26188983 -117597472 + AluJb SINE Alu 1 292 -20 296 203 16 0 chr12 26188992 26189056 -117597399 + MER31-int LTR ERV1 2023 2087 -3036 2224 106 0 3 chr12 26189132 26189425 -117597030 + AluSx SINE Alu 1 292 -20 3253 153 23 74 chr12 26189491 26190273 -117596182 + MER31-int LTR ERV1 3687 4428 -1903 1556 159 10 42 chr12 26190274 26190563 -117595892 + AluJo SINE Alu 1 280 -32 216 0 0 0 chr12 26190675 26190699 -117595756 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2117 129 0 16 chr12 26190734 26191045 -117595410 + AluSx SINE Alu 1 306 -6 2014 131 30 0 chr12 26191390 26191687 -117594768 + AluSx SINE Alu 1 306 -6 987 152 5 71 chr12 26192276 26192349 -117594106 + MER5A DNA MER1_type 2 78 -111 850 156 0 30 chr12 26192349 26192484 -117593971 + FLAM_C SINE Alu 2 132 -1 987 152 5 71 chr12 26192484 26192608 -117593847 + MER5A DNA MER1_type 78 186 -3 1860 155 0 17 chr12 26192809 26193106 -117593349 - AluSx SINE Alu -20 292 1 1337 219 4 15 chr12 26193106 26193376 -117593079 + AluJo SINE Alu 17 283 -29 576 208 7 115 chr12 26194047 26194316 -117592139 + AluJb SINE Alu 41 280 -32 4220 173 46 22 chr12 26194347 26195178 -117591277 + MER31-int LTR ERV1 4971 5821 -1716 4261 186 7 26 chr12 26195481 26196196 -117590259 + MER31-int LTR ERV1 5825 6525 -1012 2288 118 3 0 chr12 26196196 26196502 -117589953 + AluSx SINE Alu 1 307 -5 4261 186 7 26 chr12 26196502 26196599 -117589856 + MER31-int LTR ERV1 6525 6622 -915 276 158 0 0 chr12 26196599 26196637 -117589818 - Alu SINE Alu -265 38 1 21 0 0 0 chr12 26197565 26197586 -117588869 + AT_rich Low_complexity Low_complexity 1 21 0 607 261 43 53 chr12 26198105 26198293 -117588162 - LTR16A1 LTR ERVL 0 457 272 2549 138 19 33 chr12 26198294 26198720 -117587735 + MSTB1 LTR MaLR 1 420 -12 412 143 0 2 chr12 26198739 26198812 -117587643 + MSTB1 LTR MaLR 325 432 0 476 200 116 10 chr12 26198812 26199046 -117587409 - LTR16A1 LTR ERVL -182 275 1 42 0 0 0 chr12 26199709 26199751 -117586704 + AT_rich Low_complexity Low_complexity 1 42 0 915 166 0 0 chr12 26199768 26199907 -117586548 - AluJo SINE Alu -173 139 1 204 40 0 0 chr12 26200292 26200317 -117586138 + (T)n Simple_repeat Simple_repeat 1 25 0 269 292 45 0 chr12 26200714 26200803 -117585652 + MIR SINE MIR 37 129 -133 877 181 18 23 chr12 26200823 26200994 -117585461 - MSTB LTR MaLR -54 372 203 2311 92 0 0 chr12 26200994 26201287 -117585168 + AluY SINE Alu 1 293 -18 209 182 18 0 chr12 26201287 26201342 -117585113 + GA-rich Low_complexity Low_complexity 3 58 0 187 241 152 0 chr12 26201392 26201471 -117584984 + MIR SINE MIR 142 232 -30 983 227 14 5 chr12 26201570 26201777 -117584678 - MIR SINE MIR -27 235 27 205 280 11 32 chr12 26203722 26203815 -117582640 + MIR SINE MIR 100 190 -72 397 271 40 53 chr12 26204615 26204766 -117581689 - MIR3 SINE MIR -5 203 55 2583 72 0 0 chr12 26206259 26206564 -117579891 + AluSc SINE Alu 1 305 -4 1333 191 92 0 chr12 26206574 26206846 -117579609 + AluJb SINE Alu 1 297 -5 2246 133 128 10 chr12 26207213 26207596 -117578859 - MSTA LTR MaLR 0 428 1 821 264 75 45 chr12 26207655 26208080 -117578375 + MLT1J1 LTR MaLR 8 445 -1 772 174 0 43 chr12 26209690 26209814 -117576641 + AluJo SINE Alu 1 120 -182 423 0 0 0 chr12 26209814 26209861 -117576594 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 772 174 0 43 chr12 26209861 26209874 -117576581 + AluJo SINE Alu 120 132 -170 631 183 98 20 chr12 26209940 26210093 -117576362 + MER58B DNA MER1_type 1 165 -176 908 114 0 15 chr12 26210093 26210225 -117576230 + AluJo SINE Alu 1 130 -172 308 226 32 43 chr12 26210226 26210319 -117576136 + MER58B DNA MER1_type 116 333 -8 1597 196 0 46 chr12 26211335 26211661 -117574794 + AluSx SINE Alu 2 312 0 557 211 68 23 chr12 26211743 26211876 -117574579 + AluJo SINE Alu 118 256 -56 1638 195 3 13 chr12 26213283 26213596 -117572859 - AluJo SINE Alu -2 310 1 2123 129 0 13 chr12 26213941 26214251 -117572204 - AluSx SINE Alu -6 306 1 315 0 0 0 chr12 26214286 26214321 -117572134 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr12 26214343 26214365 -117572090 + GC_rich Low_complexity Low_complexity 1 22 0 487 354 0 0 chr12 26214439 26214614 -117571841 + G-rich Low_complexity Low_complexity 1 175 0 361 290 57 85 chr12 26214741 26214989 -117571466 + MLT1J LTR MaLR 224 464 -47 2068 138 7 0 chr12 26215180 26215485 -117570970 - AluSq SINE Alu -4 309 3 300 168 0 16 chr12 26215752 26215973 -117570482 + AluJo SINE Alu 2 281 -21 200 238 0 0 chr12 26215973 26216015 -117570440 + T-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr12 26216051 26216075 -117570380 + AT_rich Low_complexity Low_complexity 1 24 0 2015 140 3 0 chr12 26216197 26216483 -117569972 + AluSx SINE Alu 1 287 -25 238 0 53 26 chr12 26216486 26216524 -117569931 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 230 156 0 0 chr12 26217004 26217049 -117569406 + A-rich Low_complexity Low_complexity 1 45 0 2355 90 0 13 chr12 26217178 26217489 -117568966 - AluY SINE Alu -3 308 2 367 293 120 0 chr12 26218264 26218431 -117568024 + MIR SINE MIR 64 250 -12 223 175 0 0 chr12 26218511 26218551 -117567904 + GA-rich Low_complexity Low_complexity 1 40 0 1322 142 0 47 chr12 26219074 26219307 -117567148 - AluJo SINE Alu -6 306 85 749 283 124 41 chr12 26219380 26219695 -117566760 + LTR16A LTR ERVL 117 450 0 913 256 24 24 chr12 26219837 26220083 -117566372 + MIR SINE MIR 16 261 -1 815 253 0 0 chr12 26220702 26220876 -117565579 - AluJb SINE Alu -3 309 136 2244 115 0 0 chr12 26221100 26221395 -117565060 - AluSx SINE Alu -17 295 1 1626 157 26 11 chr12 26222224 26222519 -117563936 + AluJo SINE Alu 11 309 0 2109 100 11 4 chr12 26222728 26223050 -117563405 + AluSx SINE Alu 1 324 0 267 321 60 0 chr12 26223198 26223282 -117563173 + MIR3 SINE MIR 15 103 -105 372 312 166 39 chr12 26223427 26223764 -117562691 + L3 LINE CR1 1196 1575 -2 2096 142 3 0 chr12 26224156 26224466 -117561989 - AluSq SINE Alu -1 312 2 1838 116 93 0 chr12 26224481 26224763 -117561692 - AluSx SINE Alu 0 306 1 1952 127 7 3 chr12 26224796 26225087 -117561368 - AluSx SINE Alu -20 292 1 235 170 19 0 chr12 26225264 26225317 -117561138 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 2171 156 55 0 chr12 26226102 26226726 -117559729 - L1MC4 LINE L1 -570 7318 6500 1227 172 72 63 chr12 26226726 26226957 -117559498 - MER33 DNA MER1_type -2263 322 86 2117 136 0 0 chr12 26226957 26227258 -117559197 + AluSx SINE Alu 1 301 -11 1227 172 72 63 chr12 26227258 26227345 -117559110 - MER33 DNA MER1_type -2499 86 1 2171 156 55 0 chr12 26227345 26227486 -117558969 - L1MC4 LINE L1 -1388 6500 6369 1843 224 33 58 chr12 26227504 26228053 -117558402 - L1ME2 LINE L1 -24 6140 5606 342 367 32 68 chr12 26228262 26228522 -117557933 + L2 LINE L2 2965 3214 -58 2312 101 7 0 chr12 26228522 26228830 -117557625 - AluSp SINE Alu -2 311 2 342 367 32 68 chr12 26228830 26228880 -117557575 + L2 LINE L2 3214 3264 -8 183 306 20 0 chr12 26228888 26228937 -117557518 - MIR SINE MIR -94 114 65 1706 195 0 19 chr12 26229396 26229714 -117556741 + AluJo SINE Alu 1 312 0 33 25 0 0 chr12 26230543 26230583 -117555872 + AT_rich Low_complexity Low_complexity 1 40 0 279 180 0 0 chr12 26230680 26230730 -117555725 + AluSx SINE Alu 83 132 -170 2183 107 0 7 chr12 26230733 26231022 -117555433 + AluSx SINE Alu 1 287 -25 1210 148 0 0 chr12 26231047 26231230 -117555225 + AluSx SINE Alu 127 309 -3 1775 147 3 52 chr12 26231880 26232187 -117554268 - AluJb SINE Alu -20 292 1 233 172 71 81 chr12 26232272 26232371 -117554084 - L1MC5 LINE L1 -209 7752 7655 2149 96 13 13 chr12 26232582 26232885 -117553570 + AluSx SINE Alu 1 303 -9 1547 177 70 27 chr12 26233386 26233513 -117552942 + L1M4 LINE L1 2804 2924 -3222 6265 121 4 9 chr12 26233513 26234070 -117552385 + L1PA13 LINE L1 4736 5294 -869 1983 150 6 13 chr12 26234070 26234383 -117552072 + AluSx SINE Alu 1 311 -1 6265 121 4 9 chr12 26234383 26235250 -117551205 + L1PA13 LINE L1 5294 6163 0 1547 177 70 27 chr12 26235250 26235535 -117550920 + L1M4 LINE L1 2924 3234 -2912 883 249 21 45 chr12 26235782 26236071 -117550384 + AluSq SINE Alu 29 310 -3 5736 128 2 9 chr12 26236072 26236939 -117549516 + L1PA13 LINE L1 5303 6163 0 1016 209 46 139 chr12 26236933 26237234 -117549221 + L1M4 LINE L1 2920 3166 -2980 * 228 32 0 0 chr12 26237234 26237265 -117549190 + Alu SINE Alu 267 297 -5 1016 209 46 139 chr12 26237265 26237565 -117548890 + L1M4 LINE L1 3166 3492 -2654 1975 160 16 0 chr12 26238131 26238438 -117548017 + AluSx SINE Alu 1 312 0 1672 189 14 0 chr12 26240079 26240375 -117546080 + AluJo SINE Alu 1 300 -12 2525 50 3 3 chr12 26240377 26240677 -117545778 + AluY SINE Alu 1 300 -11 183 257 193 18 chr12 26240867 26240976 -117545479 + MIR SINE MIR 27 154 -108 550 273 0 8 chr12 26241454 26241575 -117544880 + MIR3 SINE MIR 83 202 -6 2272 123 0 0 chr12 26241746 26242055 -117544400 + AluSx SINE Alu 1 309 -3 897 260 24 24 chr12 26242674 26242920 -117543535 - MIR SINE MIR -1 261 16 734 286 63 32 chr12 26243062 26243377 -117543078 - LTR16A LTR ERVL 0 450 117 1318 142 0 47 chr12 26243450 26243683 -117542772 + AluJo SINE Alu 85 306 -6 223 175 0 0 chr12 26244205 26244245 -117542210 + CT-rich Low_complexity Low_complexity 1 40 0 417 312 129 0 chr12 26244325 26244511 -117541944 - MIR SINE MIR -12 250 41 2435 88 0 3 chr12 26245267 26245574 -117540881 + AluY SINE Alu 2 307 -4 214 178 0 0 chr12 26245703 26245748 -117540707 + T-rich Low_complexity Low_complexity 1 45 0 238 0 53 26 chr12 26246228 26246266 -117540189 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1990 136 3 3 chr12 26246269 26246556 -117539899 - AluSx SINE Alu -25 287 1 24 0 0 0 chr12 26246678 26246702 -117539753 + AT_rich Low_complexity Low_complexity 1 24 0 287 182 0 0 chr12 26246777 26246821 -117539634 - AluJo SINE Alu -21 281 238 1011 171 0 17 chr12 26246822 26246998 -117539457 - AluJo SINE Alu -138 174 2 2106 128 7 0 chr12 26247265 26247570 -117538885 + AluSq SINE Alu 3 309 -4 577 264 94 99 chr12 26247761 26248227 -117538228 - MLT1J LTR MaLR -47 464 1 1935 152 9 25 chr12 26249110 26249426 -117537029 + AluSx SINE Alu 2 312 0 2028 134 3 0 chr12 26250115 26250405 -117536050 + AluSx SINE Alu 1 291 -21 2373 210 60 75 chr12 26250460 26251165 -117535290 - LTR8A LTR ERV1 0 727 34 24 32 0 0 chr12 26251202 26251233 -117535222 + AT_rich Low_complexity Low_complexity 1 31 0 2256 111 7 0 chr12 26251233 26251539 -117534916 + AluSp SINE Alu 2 309 -4 464 319 147 33 chr12 26251772 26252317 -117534138 + L2 LINE L2 738 1344 -1970 456 353 107 35 chr12 26252393 26252994 -117533461 + L2 LINE L2 2243 2886 -428 581 323 97 66 chr12 26253351 26253380 -117533075 + L2 LINE L2 1745 1772 -1542 1944 158 0 10 chr12 26253380 26253690 -117532765 - AluJb SINE Alu -5 307 1 581 323 97 66 chr12 26253690 26254300 -117532155 + L2 LINE L2 1772 2404 -910 835 179 0 15 chr12 26254330 26254464 -117531991 - FLAM_C SINE Alu -1 132 1 319 143 0 0 chr12 26254511 26254560 -117531895 - HSMAR2 DNA Mariner -426 876 828 272 158 0 0 chr12 26255463 26255501 -117530954 + Alu SINE Alu 1 38 -265 540 149 0 32 chr12 26255501 26255595 -117530860 - MER57-int LTR ERV1 -915 6622 6532 2219 118 7 0 chr12 26255598 26255902 -117530553 - AluSx SINE Alu -6 306 1 270 152 71 81 chr12 26255987 26256086 -117530369 - L1MC5 LINE L1 -209 7752 7655 2139 99 13 13 chr12 26256297 26256600 -117529855 + AluSx SINE Alu 1 303 -9 701 146 51 13 chr12 26257101 26257259 -117529196 + L1M4 LINE L1 2804 2967 -3179 * 3014 171 16 2 chr12 26257228 26257784 -117528671 + L1P LINE L1 4736 5299 -847 448 259 0 0 chr12 26257785 26257870 -117528585 + AluS SINE Alu 2 86 -227 2489 146 7 34 chr12 26258109 26258554 -117527901 - MER41B LTR ERV1 -202 433 1 4963 211 30 11 chr12 26259613 26260662 -117525793 + L1PBa LINE L1 374 1442 -5421 226 293 0 0 chr12 26261416 26261474 -117524981 - MIR SINE MIR -122 140 83 275 230 90 40 chr12 26261536 26261636 -117524819 + MER46C DNA MER2_type 2 106 -232 1914 140 11 3 chr12 26261637 26261922 -117524533 + AluSx SINE Alu 1 287 -25 1744 178 21 0 chr12 26261967 26262248 -117524207 + AluJb SINE Alu 11 297 -15 317 333 14 27 chr12 26262425 26262572 -117523883 + L1MDa LINE L1 273 417 -6123 26 30 0 0 chr12 26262774 26262807 -117523648 + GC_rich Low_complexity Low_complexity 1 33 0 222 62 0 0 chr12 26263076 26263108 -117523347 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1713 113 73 0 chr12 26263111 26263358 -117523097 - AluSq SINE Alu -48 265 1 305 243 19 29 chr12 26263494 26263597 -117522858 - MLT1L LTR MaLR -22 593 492 442 20 0 0 chr12 26264198 26264248 -117522207 - AluY SINE Alu -259 51 2 370 314 32 8 chr12 26265002 26265126 -117521329 - MIR SINE MIR -118 144 18 287 389 16 0 chr12 26265757 26265883 -117520572 + L2 LINE L2 3145 3272 0 2095 123 7 0 chr12 26265900 26266200 -117520255 + AluSg SINE Alu 1 302 -8 264 167 0 0 chr12 26266520 26266568 -117519887 - MIR SINE MIR -130 132 85 692 261 173 15 chr12 26267226 26267555 -117518900 + LTR50 LTR ERVL 95 475 -320 41 78 0 0 chr12 26268279 26268369 -117518086 + AT_rich Low_complexity Low_complexity 1 90 0 507 304 34 21 chr12 26269417 26269450 -117517005 + L1MC/D LINE L1 5566 5597 -577 270 0 0 0 chr12 26269450 26269480 -117516975 + (GA)n Simple_repeat Simple_repeat 2 31 0 507 304 34 21 chr12 26269480 26269721 -117516734 + L1MC/D LINE L1 5597 5849 -325 229 356 14 0 chr12 26269772 26269845 -117516610 - L2 LINE L2 -1 3312 3239 517 263 29 35 chr12 26270317 26270488 -117515967 + MER5B DNA MER1_type 2 171 -7 322 314 170 13 chr12 26270623 26270776 -117515679 + MIR SINE MIR 13 189 -73 702 247 28 6 chr12 26271107 26271289 -117515166 + L2 LINE L2 1399 1584 -1730 297 225 0 28 chr12 26271570 26271641 -117514814 + MIR SINE MIR 73 141 -121 964 179 49 62 chr12 26271692 26271959 -117514496 - L1ME1 LINE L1 -7 6159 5899 2406 126 78 0 chr12 26271959 26272357 -117514098 - L1MD1 LINE L1 -13 6229 5801 202 162 353 0 chr12 26272367 26272435 -117514020 + MIR SINE MIR 171 262 0 574 249 140 31 chr12 26272457 26272577 -117513878 + L2 LINE L2 3021 3127 -186 281 26 26 0 chr12 26272577 26272615 -117513840 + (TG)n Simple_repeat Simple_repeat 2 40 0 574 249 140 31 chr12 26272615 26272751 -117513704 + L2 LINE L2 3127 3305 -8 22 35 0 0 chr12 26272813 26272842 -117513613 + AT_rich Low_complexity Low_complexity 1 29 0 1853 148 3 38 chr12 26272937 26273254 -117513201 + AluJb SINE Alu 1 306 -6 188 277 0 0 chr12 26273267 26273314 -117513141 - L3b LINE CR1 -435 1148 1102 2135 155 21 13 chr12 26273587 26273974 -117512481 + MLT1B LTR MaLR 1 390 0 195 354 106 21 chr12 26274264 26274501 -117511954 - L2 LINE L2 -1052 2262 2006 298 241 126 45 chr12 26274563 26274762 -117511693 + L2 LINE L2 1892 2106 -1208 200 271 68 0 chr12 26275028 26275087 -117511368 - L2 LINE L2 -1 3312 3250 1699 218 70 23 chr12 26275456 26275938 -117510517 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr12 26275971 26275996 -117510459 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr12 26276368 26276405 -117510050 + (TG)n Simple_repeat Simple_repeat 1 37 0 241 383 63 34 chr12 26277807 26278157 -117508298 + L2 LINE L2 2330 2689 -625 37878 68 8 6 chr12 26278225 26284357 -117502098 + L1PA3 LINE L1 11 6155 0 1198 274 63 11 chr12 26284359 26284979 -117501476 + L1M4 LINE L1 3077 3728 -2418 3879 213 59 17 chr12 26285154 26287015 -117499440 - L1 LINE L1 -2937 4628 2686 819 104 6 73 chr12 26287018 26287182 -117499273 - L1 LINE L1 -5160 1405 1253 207 332 153 31 chr12 26288870 26289093 -117497362 + MIR SINE MIR 13 262 0 350 244 173 0 chr12 26290099 26290226 -117496229 - MIR SINE MIR -4 258 110 28 0 0 0 chr12 26291175 26291203 -117495252 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 26292476 26292497 -117493958 + AT_rich Low_complexity Low_complexity 1 21 0 1784 174 6 13 chr12 26293001 26293312 -117493143 - AluJo SINE Alu -3 309 1 1911 50 50 4 chr12 26293957 26294196 -117492259 + AluY SINE Alu 1 250 -61 180 0 0 0 chr12 26294202 26294222 -117492233 + (A)n Simple_repeat Simple_repeat 1 20 0 211 308 183 19 chr12 26295273 26295377 -117491078 + MIR SINE MIR 21 141 -67 1046 276 43 50 chr12 26296167 26296402 -117490053 + MER20B DNA MER1_type 2 234 -549 2124 120 3 10 chr12 26296402 26296702 -117489753 + AluSx SINE Alu 1 298 -14 1046 276 43 50 chr12 26296702 26296929 -117489526 + MER20B DNA MER1_type 234 461 -322 897 219 87 20 chr12 26297052 26297399 -117489056 + L1MC5 LINE L1 7509 7878 -83 2255 119 3 0 chr12 26297586 26297888 -117488567 - AluSx SINE Alu -4 308 6 457 312 56 0 chr12 26297914 26298039 -117488416 - MIR SINE MIR -82 180 49 2216 158 40 12 chr12 26299735 26300182 -117486273 - L1 LINE L1 -2826 4739 4275 2509 109 19 6 chr12 26300182 26300541 -117485914 - THE1B LTR MaLR 0 364 1 2216 158 40 12 chr12 26300541 26300592 -117485863 - L1 LINE L1 -3290 4275 4227 9834 56 12 1 chr12 26300674 26302694 -117483761 - L1PA5 LINE L1 -8 6146 4113 22192 85 11 5 chr12 26302694 26305896 -117480559 - L1PA5 LINE L1 -2925 3221 1 2073 117 0 0 chr12 26305904 26306178 -117480277 - AluSg SINE Alu -36 274 1 6960 140 38 9 chr12 26306178 26307961 -117478494 - L1 LINE L1 -3325 4240 2402 1596 103 4 0 chr12 26307959 26308201 -117478254 - L1P5 LINE L1 -373 5778 5536 * 642 308 53 19 chr12 26309057 26309106 -117477349 - MIR SINE MIR -44 218 172 2399 172 24 5 chr12 26309106 26309524 -117476931 + MSTB LTR MaLR 1 426 0 9156 174 13 14 chr12 26309524 26311176 -117475279 + MSTB-int LTR MaLR 1 1651 0 2131 171 83 13 chr12 26311176 26311574 -117474881 + MSTB LTR MaLR 1 426 0 642 308 53 19 chr12 26311574 26311730 -117474725 - MIR SINE MIR -89 173 4 203 355 40 105 chr12 26311744 26312048 -117474407 - L2 LINE L2 -22 3250 2967 181 281 16 31 chr12 26312077 26312141 -117474314 - L2 LINE L2 0 3313 3251 706 203 8 0 chr12 26312609 26312742 -117473713 + MER45A DNA AcHobo 1 134 -44 2256 99 0 0 chr12 26312961 26313284 -117473171 - AluY SINE Alu 0 323 1 1940 155 0 7 chr12 26313297 26313593 -117472862 - AluSx SINE Alu -18 294 1 329 328 40 8 chr12 26313665 26313790 -117472665 + MIR SINE MIR 29 157 -105 312 164 0 0 chr12 26314380 26314447 -117472008 + CT-rich Low_complexity Low_complexity 4 70 0 219 247 210 0 chr12 26316069 26316150 -117470305 + MIR SINE MIR 121 218 -44 393 345 24 0 chr12 26316872 26317040 -117469415 + L1MEd LINE L1 442 613 -5506 433 175 21 21 chr12 26317058 26317155 -117469300 - HsTC2 DNA Tc2 -1793 105 9 10887 43 7 1 chr12 26317311 26319433 -117467022 - L1PA5 LINE L1 -1 6153 4026 4662 108 96 22 chr12 26321130 26321625 -117464830 - HSMAR2 DNA Mariner -420 882 301 1894 179 0 3 chr12 26321625 26321922 -117464533 + AluJo SINE Alu 4 299 -13 4662 108 96 22 chr12 26321922 26322246 -117464209 - HSMAR2 DNA Mariner -1001 301 2 1601 182 4 8 chr12 26322740 26323004 -117463451 + AluJb SINE Alu 1 263 -49 1728 158 158 60 chr12 26323017 26323516 -117462939 - LTR10A LTR ERV1 -61 548 1 192 77 0 0 chr12 26323540 26323566 -117462889 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2789 188 35 23 chr12 26323721 26324328 -117462127 + MER6 DNA MER2_type 20 633 -232 2690 90 83 11 chr12 26324386 26324781 -117461674 + MER4C LTR ERV1 1 431 -34 875 19 0 0 chr12 26324781 26324885 -117461570 - L1PA3 LINE L1 0 6155 6052 2690 90 83 11 chr12 26324885 26324923 -117461532 + MER4C LTR ERV1 431 465 0 457 79 13 0 chr12 26324929 26325005 -117461450 + MER6 DNA MER2_type 659 735 -130 1203 204 65 38 chr12 26325106 26325567 -117460888 + LTR29 LTR ERV1 137 644 0 885 106 30 0 chr12 26325567 26325698 -117460757 + MER6 DNA MER2_type 731 865 0 4541 127 53 21 chr12 26326686 26327441 -117459014 - MER4E LTR ERV1 0 779 1 1373 153 0 44 chr12 26327555 26327784 -117458671 + AluJo SINE Alu 92 310 -2 1729 130 82 4 chr12 26328309 26328578 -117457877 - AluSx SINE Alu -22 290 1 5198 202 122 9 chr12 26328727 26329977 -117456478 - MER52A LTR ERV1 0 1755 365 294 182 15 0 chr12 26330500 26330566 -117455889 - MER52A LTR ERV1 -1688 67 1 3744 133 19 25 chr12 26330639 26331278 -117455177 - MER41B LTR ERV1 0 635 1 832 193 87 14 chr12 26331983 26332256 -117454199 - LTR49 LTR ERV1 0 607 313 * 1165 160 143 16 chr12 26332253 26332497 -117453958 - LTR29 LTR ERV1 -347 275 1 2348 100 7 0 chr12 26332926 26333236 -117453219 + AluSx SINE Alu 1 312 0 2163 110 31 0 chr12 26333272 26333562 -117452893 - AluSx SINE Alu -13 299 1 2277 114 0 7 chr12 26333824 26334131 -117452324 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr12 26334137 26334160 -117452295 + AT_rich Low_complexity Low_complexity 1 23 0 201 129 0 0 chr12 26334197 26334228 -117452227 + (CAGTT)n Simple_repeat Simple_repeat 5 35 0 1998 224 13 47 chr12 26334768 26335220 -117451235 - LTR40a LTR ERVL 0 519 86 2326 82 0 3 chr12 26335220 26335523 -117450932 + AluY SINE Alu 1 302 -9 1998 224 13 47 chr12 26335523 26335607 -117450848 - LTR40a LTR ERVL -433 86 1 181 365 128 15 chr12 26335675 26335802 -117450653 - L2 LINE L2 -695 2619 2508 695 202 161 16 chr12 26335802 26335995 -117450460 - MER58A DNA MER1_type 0 224 4 181 365 128 15 chr12 26335995 26336070 -117450385 - L2 LINE L2 -806 2508 2394 862 132 0 0 chr12 26336144 26336265 -117450190 + FLAM_C SINE Alu 1 121 -22 259 24 24 24 chr12 26336265 26336306 -117450149 + (TAA)n Simple_repeat Simple_repeat 2 42 0 447 362 19 10 chr12 26336339 26336546 -117449909 - L2 LINE L2 -1001 2313 2105 189 0 0 0 chr12 26336593 26336614 -117449841 + (TG)n Simple_repeat Simple_repeat 2 22 0 245 234 91 39 chr12 26336967 26337044 -117449411 - L2 LINE L2 -6 3266 3186 22 70 0 0 chr12 26337495 26337538 -117448917 + AT_rich Low_complexity Low_complexity 1 43 0 3122 118 114 7 chr12 26337657 26338208 -117448247 + MER4B LTR ERV1 1 610 0 210 254 0 0 chr12 26339754 26339821 -117446634 + CT-rich Low_complexity Low_complexity 2 68 0 620 269 11 119 chr12 26340885 26341031 -117445424 + MIR SINE MIR 8 110 -152 1689 187 4 0 chr12 26341031 26341309 -117445146 + AluJo SINE Alu 1 279 -33 620 269 11 119 chr12 26341309 26341448 -117445007 + MIR SINE MIR 110 262 0 21 36 0 0 chr12 26341984 26342012 -117444443 + AT_rich Low_complexity Low_complexity 1 28 0 1725 157 6 118 chr12 26342252 26342486 -117443969 - L1MB8 LINE L1 0 6178 5920 1209 145 19 199 chr12 26342486 26342852 -117443603 - AluSq SINE Alu -13 300 1 1725 157 6 118 chr12 26342852 26342945 -117443510 - L1MB8 LINE L1 -258 5920 5923 2956 29 0 0 chr12 26342945 26343295 -117443160 - L1PA4 LINE L1 -3 6152 5803 1725 157 6 118 chr12 26343295 26343468 -117442987 - L1MB8 LINE L1 -254 5924 5733 1264 129 62 129 chr12 26343472 26343648 -117442807 - AluJb SINE Alu -9 303 157 273 57 0 0 chr12 26343648 26343683 -117442772 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1264 129 62 129 chr12 26343683 26343831 -117442624 - AluJb SINE Alu -155 157 1 2310 102 0 9 chr12 26343857 26344172 -117442283 + AluSq SINE Alu 1 312 -1 227 140 0 0 chr12 26344187 26344237 -117442218 - L1MB8 LINE L1 -830 5316 5267 2668 183 37 20 chr12 26344278 26344876 -117441579 - L1MB8 LINE L1 -878 5268 4682 456 19 0 0 chr12 26344876 26344929 -117441526 + (TA)n Simple_repeat Simple_repeat 1 53 0 1793 155 3 3 chr12 26344929 26345213 -117441242 - AluSx SINE Alu -28 284 1 2668 183 37 20 chr12 26345213 26345258 -117441197 - L1MB8 LINE L1 -1463 4683 4613 1752 221 74 11 chr12 26345322 26345864 -117440591 - L1MB8 LINE L1 -1943 4203 3628 6226 205 89 61 chr12 26345890 26346511 -117439944 - L1MDa LINE L1 -4339 2201 1599 1606 194 0 7 chr12 26346511 26346799 -117439656 + AluJb SINE Alu 9 294 -18 6226 205 89 61 chr12 26346799 26348248 -117438207 - L1MDa LINE L1 -4941 1599 74 1789 188 20 0 chr12 26348249 26348542 -117437913 - AluJb SINE Alu -13 299 1 1918 148 0 0 chr12 26348577 26348861 -117437594 - AluJb SINE Alu -25 287 4 335 296 62 23 chr12 26348909 26349085 -117437370 - L1ME LINE L1 -379 5742 5560 478 233 167 6 chr12 26349282 26349462 -117436993 - MIR SINE MIR 0 262 54 2380 107 0 0 chr12 26350874 26351184 -117435271 - AluSx SINE Alu 0 312 3 552 335 77 11 chr12 26351923 26352299 -117434156 + L1MC/D LINE L1 5380 5780 -2028 317 206 0 0 chr12 26352342 26352410 -117434045 + MER94 DNA DNA 4 71 -63 928 235 111 37 chr12 26353284 26353853 -117432602 - L2 LINE L2 0 3313 2688 212 301 32 32 chr12 26354165 26354258 -117432197 + L2 LINE L2 2572 2664 -650 262 385 195 5 chr12 26354593 26354793 -117431662 + L2 LINE L2 2985 3222 -50 224 298 96 11 chr12 26355377 26355471 -117430984 - L2 LINE L2 -1 3312 3211 21 0 0 0 chr12 26355817 26355838 -117430617 + AT_rich Low_complexity Low_complexity 1 21 0 305 358 78 36 chr12 26356560 26356895 -117429560 + L2 LINE L2 2168 2516 -798 2179 142 0 0 chr12 26356904 26357213 -117429242 - AluSx SINE Alu -3 309 1 2557 54 0 16 chr12 26357263 26357579 -117428876 - AluY SINE Alu 0 311 1 889 208 6 0 chr12 26357630 26357798 -117428657 - FRAM SINE Alu -8 168 1 2105 93 14 0 chr12 26357924 26358241 -117428214 - AluSx SINE Alu 0 321 1 1490 123 110 72 chr12 26359605 26359897 -117426558 + AluSq SINE Alu 1 303 -10 1268 155 21 0 chr12 26360159 26360379 -117426076 + AluJo SINE Alu 86 309 0 2439 148 13 0 chr12 26360446 26360844 -117425611 - MER57A LTR ERV1 0 403 1 233 296 52 87 chr12 26361597 26361712 -117424743 + L2 LINE L2 3154 3264 -8 368 271 42 42 chr12 26362319 26362485 -117423970 + L2 LINE L2 3143 3308 -5 1900 142 0 14 chr12 26362675 26362971 -117423484 + AluJb SINE Alu 19 310 -2 28 0 0 0 chr12 26362971 26362999 -117423456 + AT_rich Low_complexity Low_complexity 1 28 0 645 214 71 18 chr12 26363450 26363618 -117422837 + MER5B DNA MER1_type 1 177 -1 1833 155 0 20 chr12 26363922 26364226 -117422229 - AluJo SINE Alu -14 298 1 352 362 28 11 chr12 26364231 26364408 -117422047 + L3b LINE CR1 1355 1534 -49 472 258 45 67 chr12 26364755 26364933 -117421522 - MIR SINE MIR -81 181 8 213 264 0 0 chr12 26365409 26365481 -117420974 + (TA)n Simple_repeat Simple_repeat 2 73 0 1959 144 20 7 chr12 26365517 26365823 -117420632 - AluSx SINE Alu -2 310 1 1791 158 14 4 chr12 26366778 26367101 -117419354 - AluJb SINE Alu 0 326 1 2288 98 3 0 chr12 26367237 26367534 -117418921 + AluSp SINE Alu 1 298 -15 1079 302 45 36 chr12 26367702 26368284 -117418171 + MLT1K LTR MaLR 2 588 0 1597 176 50 4 chr12 26368388 26368666 -117417789 + AluJo SINE Alu 1 291 -21 230 236 124 67 chr12 26368738 26368827 -117417628 - MIR3 SINE MIR -6 202 109 29 0 0 0 chr12 26369177 26369206 -117417249 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr12 26370210 26370245 -117416210 + AT_rich Low_complexity Low_complexity 1 35 0 2305 109 0 13 chr12 26371562 26371873 -117414582 + AluSx SINE Alu 1 307 -5 251 262 0 0 chr12 26371966 26372027 -117414428 + MER96 DNA MER1_type? 1 61 -114 21 57 0 0 chr12 26372102 26372137 -117414318 + AT_rich Low_complexity Low_complexity 1 35 0 2247 117 0 3 chr12 26372274 26372573 -117413882 - AluSx SINE Alu -14 298 1 239 147 120 27 chr12 26372580 26372655 -117413800 + Zaphod DNA AcHobo 3802 3883 -148 * 515 238 8 16 chr12 26372651 26372773 -117413682 - MER21B LTR ERV1 -414 449 329 320 266 67 14 chr12 26372773 26372915 -117413540 - L1MC/D LINE L1 -379 5791 5679 860 160 7 0 chr12 26373011 26373161 -117413294 + MER3 DNA MER1_type 2 152 -57 1863 130 3 52 chr12 26373791 26374098 -117412357 - AluJb SINE Alu -10 302 11 998 235 65 9 chr12 26374222 26374452 -117412003 - MIR SINE MIR 0 262 20 473 250 88 14 chr12 26376437 26376585 -117409870 + MIR SINE MIR 47 205 -57 216 220 17 0 chr12 26377092 26377151 -117409304 + (TA)n Simple_repeat Simple_repeat 1 60 0 338 291 27 6 chr12 26377160 26377316 -117409139 - L1ME3A LINE L1 -50 6112 5961 669 312 66 41 chr12 26377690 26377929 -117408526 - L1MEd LINE L1 -3985 2578 2324 691 193 0 30 chr12 26377929 26378064 -117408391 - FLAM_C SINE Alu -2 131 1 669 312 66 41 chr12 26378064 26378218 -117408237 - L1MEd LINE L1 -4239 2324 2175 454 265 104 25 chr12 26378266 26378780 -117407675 - L1MEd LINE L1 -4701 1683 1136 258 217 58 0 chr12 26378791 26378860 -117407595 - L1MEd LINE L1 -5193 1179 1107 298 234 162 9 chr12 26379197 26379308 -117407147 + MIR SINE MIR 135 262 0 495 358 6 6 chr12 26379310 26379472 -117406983 + MIR3 SINE MIR 34 195 -13 335 274 21 0 chr12 26380935 26381030 -117405425 + MIR SINE MIR 64 160 -102 245 362 63 35 chr12 26382020 26382335 -117404120 - L2 LINE L2 -661 2653 2330 224 138 64 11 chr12 26383038 26383132 -117403323 + (TA)n Simple_repeat Simple_repeat 1 99 0 1740 185 7 10 chr12 26383142 26383440 -117403015 + AluJo SINE Alu 1 297 -15 21 57 0 0 chr12 26383456 26383491 -117402964 + AT_rich Low_complexity Low_complexity 1 35 0 300 324 0 27 chr12 26383774 26383885 -117402570 - MIR SINE MIR -87 175 68 622 228 0 16 chr12 26384547 26384670 -117401785 - FLAM_A SINE Alu -12 121 1 187 260 80 0 chr12 26384685 26384735 -117401720 + MER5A DNA MER1_type 136 189 0 450 280 53 0 chr12 26384786 26384918 -117401537 + MIR SINE MIR 69 207 -55 232 339 80 9 chr12 26385547 26385659 -117400796 + MIR3 SINE MIR 87 206 -2 449 274 137 25 chr12 26385837 26386041 -117400414 - MIR SINE MIR -12 250 24 960 190 6 0 chr12 26386767 26386925 -117399530 - AluJb SINE Alu -17 295 137 1623 80 38 0 chr12 26388038 26388277 -117398178 + L1MA1 LINE L1 6055 6302 0 1349 80 0 60 chr12 26388497 26388698 -117397757 - AluSg/x SINE Alu 0 310 122 2174 204 39 0 chr12 26388825 26389286 -117397169 + MLT1E2 LTR MaLR 137 615 -11 2062 137 3 0 chr12 26390179 26390472 -117395983 + AluJo SINE Alu 2 295 -17 21 0 0 0 chr12 26391016 26391037 -117395418 + AT_rich Low_complexity Low_complexity 1 21 0 1946 114 63 23 chr12 26391127 26391426 -117395029 + AluSx SINE Alu 1 311 -1 202 324 0 0 chr12 26391460 26391526 -117394929 - MIR SINE MIR -77 131 88 2007 152 0 0 chr12 26392504 26392800 -117393655 + AluJb SINE Alu 1 296 -16 370 252 0 19 chr12 26396242 26396349 -117390106 - Charlie2a DNA MER1_type -10 2852 2748 799 193 67 33 chr12 26396355 26396625 -117389830 - Charlie2a DNA MER1_type -1850 1012 734 * 829 273 148 11 chr12 26396624 26396990 -117389465 - Charlie2a DNA MER1_type -2388 474 59 695 197 46 83 chr12 26397178 26397396 -117389059 + MER63A DNA MER1_type 1 210 0 1389 72 0 0 chr12 26397487 26397654 -117388801 - AluYa5 SINE Alu -12 299 133 23 0 0 0 chr12 26397699 26397722 -117388733 + AT_rich Low_complexity Low_complexity 1 23 0 314 167 0 0 chr12 26398048 26398096 -117388359 - LTR16C LTR ERVL -8 483 436 1704 61 22 13 chr12 26398098 26398329 -117388126 + L1PA7 LINE L1 5922 6154 0 21 0 0 0 chr12 26398335 26398356 -117388099 + AT_rich Low_complexity Low_complexity 1 21 0 2336 107 3 0 chr12 26398365 26398665 -117387790 + AluSc SINE Alu 1 301 -8 1072 291 53 28 chr12 26398665 26398950 -117387505 - LTR16C LTR ERVL -44 447 146 1753 177 26 7 chr12 26398950 26399255 -117387200 - AluJo SINE Alu -1 311 1 1072 291 53 28 chr12 26399255 26399402 -117387053 - LTR16C LTR ERVL -345 146 4 251 282 70 70 chr12 26399703 26399737 -117386718 + MER5A DNA MER1_type 43 76 -113 1990 159 3 0 chr12 26399737 26400038 -117386417 + AluJb SINE Alu 1 302 -10 251 282 70 70 chr12 26400038 26400145 -117386310 + MER5A DNA MER1_type 75 184 -5 29 60 0 0 chr12 26400346 26400396 -117386059 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr12 26400871 26400896 -117385559 + AT_rich Low_complexity Low_complexity 1 25 0 983 169 17 39 chr12 26400897 26401075 -117385380 - AluJb SINE Alu -17 295 122 59 15 0 0 chr12 26401075 26401141 -117385314 + AT_rich Low_complexity Low_complexity 1 66 0 1951 115 11 0 chr12 26401141 26401411 -117385044 - AluSq SINE Alu -40 273 1 204 382 182 18 chr12 26401831 26401996 -117384459 + L3b LINE CR1 1386 1577 -6 211 192 231 0 chr12 26403133 26403185 -117383270 - MIR SINE MIR -32 230 167 2373 199 18 26 chr12 26403186 26403759 -117382696 + L1MB5 LINE L1 5309 5876 -298 712 157 0 46 chr12 26403752 26403905 -117382550 - L1PA16 LINE L1 -325 5841 5696 * 1189 157 35 88 chr12 26403985 26404258 -117382197 + L1MB5 LINE L1 5873 6128 -46 1995 75 0 61 chr12 26404258 26404537 -117381918 - AluY SINE Alu -13 298 37 1189 157 35 88 chr12 26404537 26404582 -117381873 + L1MB5 LINE L1 6128 6174 0 200 295 66 0 chr12 26404692 26404753 -117381702 + MIR SINE MIR 198 262 0 194 351 0 0 chr12 26404815 26404872 -117381583 + L2 LINE L2 3208 3264 -8 2497 164 16 5 chr12 26405483 26405916 -117380539 - L1PA16 LINE L1 0 6166 5729 385 313 177 35 chr12 26406255 26406623 -117379832 + L2 LINE L2 2346 2765 -549 22 70 0 0 chr12 26408354 26408397 -117378058 + AT_rich Low_complexity Low_complexity 1 43 0 354 128 51 34 chr12 26411687 26411804 -117374651 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 21 36 0 0 chr12 26412408 26412436 -117374019 + AT_rich Low_complexity Low_complexity 1 28 0 709 102 0 0 chr12 26413542 26413650 -117372805 + L1MB3 LINE L1 6075 6182 -1 790 252 109 53 chr12 26413842 26414556 -117371899 - L1ME3A LINE L1 -237 5933 5178 2543 23 7 3 chr12 26414776 26415075 -117371380 - AluY SINE Alu -11 300 1 365 286 211 0 chr12 26415240 26415439 -117371016 + MIR SINE MIR 21 261 -1 376 252 214 8 chr12 26417997 26418128 -117368327 + MER5A DNA MER1_type 26 183 -6 259 390 67 18 chr12 26419565 26419788 -117366667 + L2 LINE L2 1702 1935 -1379 21 57 0 0 chr12 26419935 26419970 -117366485 + AT_rich Low_complexity Low_complexity 1 35 0 3745 115 36 28 chr12 26420082 26420684 -117365771 + MER4B LTR ERV1 4 610 0 198 118 0 0 chr12 26420721 26420755 -117365700 + (GA)n Simple_repeat Simple_repeat 1 34 0 797 323 89 34 chr12 26421460 26422020 -117364435 + L2 LINE L2 2215 2805 -509 571 286 47 21 chr12 26422052 26422244 -117364211 - L2 LINE L2 -2 3311 3115 369 314 48 93 chr12 26422257 26422505 -117363950 + L2 LINE L2 3033 3269 -3 2478 51 0 13 chr12 26422799 26423111 -117363344 + AluY SINE Alu 1 308 -3 591 27 0 0 chr12 26423800 26423873 -117362582 + (TG)n Simple_repeat Simple_repeat 2 74 0 21 36 0 0 chr12 26425135 26425163 -117361292 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr12 26425970 26425996 -117360459 + (GA)n Simple_repeat Simple_repeat 1 26 0 885 73 0 0 chr12 26425997 26426106 -117360349 - FLAM_C SINE Alu -32 111 3 344 233 14 0 chr12 26426137 26426210 -117360245 - MIR SINE MIR -115 147 74 188 294 0 20 chr12 26426765 26426816 -117359639 - MIR3 SINE MIR -7 201 152 646 272 78 94 chr12 26426818 26427252 -117359203 + Charlie8 DNA MER1_type 4 430 -1987 2062 142 0 3 chr12 26427280 26427583 -117358872 - AluSx SINE Alu -10 302 1 187 209 93 0 chr12 26427683 26427726 -117358729 + L2 LINE L2 3259 3305 -8 219 69 0 0 chr12 26428086 26428115 -117358340 + (TC)n Simple_repeat Simple_repeat 2 30 0 216 111 0 0 chr12 26428115 26428151 -117358304 + (CA)n Simple_repeat Simple_repeat 1 36 0 1484 201 18 4 chr12 26428630 26428909 -117357546 - AluJo SINE Alu -25 287 5 924 138 0 0 chr12 26428992 26429122 -117357333 + FLAM_C SINE Alu 1 130 -13 317 258 34 83 chr12 26429261 26429407 -117357048 + MIR SINE MIR 20 157 -63 943 238 59 4 chr12 26429418 26429674 -117356781 - LTR16A LTR ERVL 0 450 181 217 274 55 0 chr12 26429820 26429893 -117356562 + MIR SINE MIR 176 252 -10 531 333 36 0 chr12 26430828 26430993 -117355462 + MIR SINE MIR 21 191 -71 505 247 74 12 chr12 26431525 26431687 -117354768 - MER3 DNA MER1_type -84 125 1 1969 130 0 0 chr12 26431712 26431981 -117354474 - AluSx SINE Alu -41 271 3 615 293 17 6 chr12 26432007 26432181 -117354274 + MIR SINE MIR 77 252 -10 2175 131 0 3 chr12 26432375 26432688 -117353767 - AluSx SINE Alu 0 312 1 255 426 25 0 chr12 26432691 26432813 -117353642 + L2 LINE L2 3136 3260 -12 285 284 0 0 chr12 26434523 26434590 -117351865 - L2 LINE L2 -2 3311 3245 627 190 22 10 chr12 26435057 26435280 -117351175 + 7SK RNA RNA 1 188 -5 204 191 16 32 chr12 26435281 26435344 -117351111 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 1923 158 0 3 chr12 26435368 26435660 -117350795 - AluJo SINE Alu -21 291 1 253 200 62 0 chr12 26435988 26436068 -117350387 + (TA)n Simple_repeat Simple_repeat 2 86 0 644 213 82 39 chr12 26436999 26437206 -117349249 - MIR SINE MIR -3 259 44 322 206 112 47 chr12 26437289 26437396 -117349059 - MIR SINE MIR -147 115 2 2223 96 3 0 chr12 26439054 26439356 -117347099 + AluSp SINE Alu 1 303 0 207 0 0 0 chr12 26439393 26439416 -117347039 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2646 51 0 0 chr12 26440409 26440720 -117345735 - AluY SINE Alu 0 311 1 230 300 91 36 chr12 26440907 26441017 -117345438 - L2 LINE L2 0 3313 3198 1883 150 0 17 chr12 26441165 26441465 -117344990 + AluSx SINE Alu 1 295 -17 1750 119 128 16 chr12 26441507 26441826 -117344629 + MER47A DNA MER2_type 12 366 0 424 208 66 28 chr12 26442787 26442893 -117343562 - MER103 DNA DNA -44 122 13 1700 199 0 0 chr12 26442906 26443203 -117343252 - AluJb SINE Alu -15 297 1 348 271 62 62 chr12 26443313 26443435 -117343020 + MIR SINE MIR 83 207 -55 1633 144 0 115 chr12 26443435 26443774 -117342681 + AluJo SINE Alu 1 300 -2 348 271 62 62 chr12 26443774 26443828 -117342627 + MIR SINE MIR 206 259 -3 208 339 37 46 chr12 26443828 26443937 -117342518 - L3b LINE CR1 -180 1403 1296 1766 28 5 0 chr12 26444491 26444703 -117341752 - L1PA5 LINE L1 -2 6152 5940 268 240 117 76 chr12 26445010 26445181 -117341274 + MIR SINE MIR 85 262 0 1800 154 3 25 chr12 26445829 26446238 -117340217 + AluJo SINE Alu 1 402 0 1920 220 149 24 chr12 26447060 26447679 -117338776 + L1ME3A LINE L1 5470 6165 -5 273 300 70 0 chr12 26448346 26448446 -117338009 + MIR3 SINE MIR 94 200 -8 403 308 89 0 chr12 26448579 26448725 -117337730 - MIR3 SINE MIR -6 202 44 200 290 81 0 chr12 26450023 26450085 -117336370 - L2 LINE L2 0 3272 3206 5747 169 43 23 chr12 26450383 26450455 -117336000 + L1MC2 LINE L1 4533 4602 -1742 1943 144 17 0 chr12 26450455 26450746 -117335709 + AluSx SINE Alu 1 296 -16 5747 169 43 23 chr12 26450746 26452175 -117334280 + L1MC2 LINE L1 4602 6073 -271 1652 167 3 43 chr12 26452175 26452474 -117333981 - AluJo SINE Alu -11 301 15 5747 169 43 23 chr12 26452474 26452743 -117333712 + L1MC2 LINE L1 6073 6335 -9 878 150 8 0 chr12 26452893 26453026 -117333429 - AluJo SINE Alu -178 134 1 465 242 20 13 chr12 26453190 26453339 -117333116 - MER103 DNA DNA -16 150 1 567 246 45 61 chr12 26453468 26453732 -117332723 - L1ME1 LINE L1 -5 6230 5971 1184 260 67 23 chr12 26453732 26454078 -117332377 + MLT1A1 LTR MaLR 1 361 -4 2680 199 45 12 chr12 26454078 26454817 -117331638 - L1ME1 LINE L1 -256 5979 5210 282 235 27 94 chr12 26454834 26454983 -117331472 - L1ME1 LINE L1 -1163 5052 4914 5797 250 112 17 chr12 26455025 26455747 -117330708 - L1ME1 LINE L1 -3605 2610 1958 2352 84 0 3 chr12 26455747 26456046 -117330409 - AluSc SINE Alu -11 298 1 5797 250 112 17 chr12 26456046 26457722 -117328733 - L1ME1 LINE L1 -4257 1958 47 288 306 219 10 chr12 26457788 26457984 -117328471 - MIR SINE MIR -6 256 20 1758 163 6 45 chr12 26459609 26459922 -117326533 - AluJo SINE Alu -11 301 1 265 293 0 12 chr12 26460115 26460197 -117326258 + MIR SINE MIR 171 251 -11 276 241 0 51 chr12 26460934 26461013 -117325442 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 356 210 241 25 chr12 26461040 26461202 -117325253 + L2 LINE L2 3098 3294 -19 496 228 92 43 chr12 26461965 26462149 -117324306 + MIR SINE MIR 60 252 -10 281 336 30 37 chr12 26463012 26463146 -117323309 + MIR3 SINE MIR 10 142 -66 246 348 177 6 chr12 26463400 26463558 -117322897 + MIR SINE MIR 21 205 -57 180 401 23 23 chr12 26463575 26463707 -117322748 + MIR3 SINE MIR 10 141 -67 37 39 0 0 chr12 26463858 26463909 -117322546 + AT_rich Low_complexity Low_complexity 1 51 0 1327 176 61 29 chr12 26463941 26464220 -117322235 + AluJo SINE Alu 3 290 -22 1335 244 115 26 chr12 26464399 26464932 -117321523 - L1ME3A LINE L1 -238 5932 5337 363 248 264 0 chr12 26465804 26465933 -117320522 + L1MC4a LINE L1 6441 6603 -1205 1357 223 225 17 chr12 26465976 26466823 -117319632 + L1MC4 LINE L1 6731 7710 -98 706 283 70 4 chr12 26467078 26467308 -117319147 + MIR SINE MIR 18 262 0 195 314 57 81 chr12 26468147 26468271 -117318184 - L3b LINE CR1 -273 1310 1190 492 18 0 0 chr12 26469569 26469626 -117316829 + (TG)n Simple_repeat Simple_repeat 2 58 0 1094 225 13 114 chr12 26471516 26471912 -117314543 + MLT1A1 LTR MaLR 10 365 0 440 294 75 32 chr12 26472170 26472220 -117314235 - MIR SINE MIR -53 209 163 1297 273 60 19 chr12 26472220 26472652 -117313803 - MLT1J2 LTR MaLR 0 450 1 440 294 75 32 chr12 26472652 26472788 -117313667 - MIR SINE MIR -99 163 15 2589 58 0 0 chr12 26472947 26473255 -117313200 - AluY SINE Alu -3 308 1 675 258 60 32 chr12 26473493 26473745 -117312710 + MIR SINE MIR 2 260 -2 895 309 80 19 chr12 26473818 26474093 -117312362 + L2 LINE L2 2402 2659 -655 3749 138 29 69 chr12 26474093 26474123 -117312332 - L1MA9 LINE L1 -1 6311 6281 230 0 33 0 chr12 26474123 26474153 -117312302 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1849 140 11 0 chr12 26474162 26474427 -117312028 + AluSx SINE Alu 1 268 -44 3749 138 29 69 chr12 26474427 26475186 -117311269 - L1MA9 LINE L1 -39 6273 5544 895 309 80 19 chr12 26475186 26475273 -117311182 + L2 LINE L2 2659 2786 -528 517 225 33 0 chr12 26475301 26475421 -117311034 - MER94 DNA DNA -10 124 1 756 301 137 12 chr12 26476054 26476290 -117310165 + L2 LINE L2 2808 3102 -211 2299 129 5 45 chr12 26476290 26476669 -117309786 + THE1B LTR MaLR 1 364 0 756 301 137 12 chr12 26476669 26476774 -117309681 + L2 LINE L2 3102 3192 -121 743 289 95 4 chr12 26476776 26477008 -117309447 - MIR SINE MIR -1 261 9 211 283 152 43 chr12 26477030 26477122 -117309333 + L2 LINE L2 3162 3263 -9 21 36 0 0 chr12 26478634 26478662 -117307793 + AT_rich Low_complexity Low_complexity 1 28 0 265 329 49 0 chr12 26479292 26479374 -117307081 - L2 LINE L2 -5 3308 3223 69 24 0 0 chr12 26479452 26479535 -117306920 + AT_rich Low_complexity Low_complexity 1 83 0 411 301 131 22 chr12 26479551 26479734 -117306721 - L2 LINE L2 -243 3070 2868 2586 111 58 0 chr12 26479912 26480328 -117306127 - MER75 DNA T2_type 0 514 75 260 241 0 0 chr12 26480533 26480591 -117305864 + L1M4b LINE L1 1129 1186 -5673 * 1585 268 50 24 chr12 26480578 26481260 -117305195 + L1M4b LINE L1 1780 2479 -4480 3330 243 94 17 chr12 26481468 26482113 -117304342 + L1M4b LINE L1 2537 3131 -3826 216 67 0 0 chr12 26482113 26482143 -117304312 + (TA)n Simple_repeat Simple_repeat 1 30 0 3330 243 94 17 chr12 26482143 26483083 -117303372 + L1M4b LINE L1 3131 4226 -2731 616 285 124 10 chr12 26483084 26483382 -117303073 - L2 LINE L2 -612 2702 2371 430 285 76 44 chr12 26483382 26483839 -117302616 + LTR33 LTR ERVL 1 519 -2 423 244 174 6 chr12 26483844 26484016 -117302439 - L2 LINE L2 -944 2370 2170 1720 256 164 26 chr12 26484020 26484705 -117301750 - L2 LINE L2 -1448 1866 1088 584 231 81 12 chr12 26484702 26484862 -117301593 + MIR SINE MIR 79 249 -13 * 248 209 0 0 chr12 26484830 26484873 -117301582 + L2 LINE L2 3222 3264 -8 * 312 277 67 0 chr12 26484911 26485030 -117301425 - L1 LINE L1 -1653 4493 4367 306 0 0 0 chr12 26485040 26485074 -117301381 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7334 23 0 0 chr12 26485074 26485958 -117300497 - L1PA3 LINE L1 -18 6137 5254 2608 191 12 60 chr12 26486586 26486895 -117299560 - L1MDb LINE L1 -5259 1150 885 1884 75 90 36 chr12 26486895 26487174 -117299281 - AluSx SINE Alu -18 294 1 2608 191 12 60 chr12 26487174 26487502 -117298953 - L1MDb LINE L1 -5524 885 543 2188 79 0 0 chr12 26487515 26487830 -117298625 - AluY SINE Alu 0 315 1 24 0 0 0 chr12 26487873 26487897 -117298558 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 26487941 26487962 -117298493 + AT_rich Low_complexity Low_complexity 1 21 0 856 178 16 5 chr12 26488036 26488221 -117298234 - MER53 DNA DNA -2 187 1 296 269 274 20 chr12 26488748 26488949 -117297506 + MIR SINE MIR 2 253 -9 192 135 0 0 chr12 26489242 26489279 -117297176 + (TG)n Simple_repeat Simple_repeat 1 37 0 1724 160 7 14 chr12 26489415 26489708 -117296747 - AluJb SINE Alu -21 291 1 266 327 190 10 chr12 26489717 26489922 -117296533 + L3b LINE CR1 1102 1343 -240 762 273 26 22 chr12 26491093 26491360 -117295095 - MLT1J LTR MaLR -202 309 42 276 226 70 181 chr12 26491492 26491735 -117294720 - MIR SINE MIR -32 230 15 793 231 135 65 chr12 26492691 26493305 -117293150 - L1MC5 LINE L1 -44 7917 7261 314 242 26 64 chr12 26493350 26493854 -117292601 - L1MC4a LINE L1 -450 7358 6881 392 219 293 0 chr12 26493856 26494020 -117292435 - L1MC4a LINE L1 -1039 6769 6558 28 48 0 0 chr12 26494089 26494131 -117292324 + AT_rich Low_complexity Low_complexity 1 42 0 279 0 0 0 chr12 26494542 26494573 -117291882 + (TG)n Simple_repeat Simple_repeat 2 32 0 363 250 16 8 chr12 26494667 26494791 -117291664 - L1MC4a LINE L1 -1995 5813 5689 237 311 117 10 chr12 26495284 26495387 -117291068 - L2 LINE L2 -13 3300 3187 1307 166 32 14 chr12 26495851 26496153 -117290302 - MER61B LTR ERV1 -29 396 1 429 371 62 11 chr12 26496600 26496875 -117289580 + MLT1K LTR MaLR 2 290 -298 213 327 48 58 chr12 26497439 26497543 -117288912 + MIR3 SINE MIR 69 171 -37 214 292 226 30 chr12 26498001 26498169 -117288286 + L2 LINE L2 2419 2619 -695 368 320 36 89 chr12 26498386 26498667 -117287788 - L2 LINE L2 -10 3262 2997 588 118 0 0 chr12 26498833 26498918 -117287537 - AluS SINE Alu -228 85 1 886 231 208 23 chr12 26498923 26499270 -117287185 - L2 LINE L2 -14 3299 2889 2853 174 145 9 chr12 26500193 26501166 -117285289 + Charlie1a DNA MER1_type 14 1153 -302 1266 190 97 31 chr12 26501167 26501488 -117284967 - MLT2B1 LTR ERVL -178 342 1 778 212 54 70 chr12 26502164 26502304 -117284151 + MIR SINE MIR 6 151 -111 2301 98 10 0 chr12 26502304 26502611 -117283844 + AluSq SINE Alu 4 313 0 778 212 54 70 chr12 26502611 26502715 -117283740 + MIR SINE MIR 151 255 -7 2062 161 15 26 chr12 26503005 26503540 -117282915 + LTR10E LTR ERV1 1 590 -43 32 75 0 0 chr12 26504920 26504987 -117281468 + AT_rich Low_complexity Low_complexity 1 67 0 438 299 120 21 chr12 26505346 26505580 -117280875 + MIR SINE MIR 5 261 -1 474 18 0 0 chr12 26505933 26505988 -117280467 + (TG)n Simple_repeat Simple_repeat 2 56 0 1107 160 0 0 chr12 26506212 26506387 -117280068 - MSTA LTR MaLR 0 428 254 766 153 0 0 chr12 26506385 26506509 -117279946 - MSTA LTR MaLR -300 126 3 * 8594 165 28 5 chr12 26506543 26508071 -117278384 - MSTB-int LTR MaLR -86 1565 3 2651 136 7 14 chr12 26508082 26508502 -117277953 - MSTB LTR MaLR -9 417 1 610 316 5 21 chr12 26508569 26508759 -117277696 - MIR SINE MIR -74 188 2 2579 174 24 59 chr12 26508858 26509434 -117277021 - MER89 LTR ERV1 0 559 4 229 157 39 0 chr12 26509710 26509761 -117276694 + MLT2E LTR ERVL 35 87 -541 238 326 11 22 chr12 26509808 26509900 -117276555 + L2 LINE L2 3177 3267 -5 208 254 0 0 chr12 26509976 26510031 -117276424 + A-rich Low_complexity Low_complexity 2 56 0 368 352 28 0 chr12 26510184 26510329 -117276126 + L2 LINE L2 2525 2673 -641 1008 212 8 4 chr12 26510355 26510619 -117275836 + MER33 DNA MER1_type 60 324 0 190 333 0 0 chr12 26510634 26510691 -117275764 + L2 LINE L2 2690 2746 -568 1831 158 108 6 chr12 26510707 26511049 -117275406 + MSTA LTR MaLR 52 428 0 248 317 0 0 chr12 26511059 26511141 -117275314 - MIR3 SINE MIR -6 202 121 32 26 0 0 chr12 26511419 26511458 -117274997 + AT_rich Low_complexity Low_complexity 1 39 0 3271 249 77 46 chr12 26511500 26512686 -117273769 - L1MEc LINE L1 -4730 1666 518 2159 130 0 13 chr12 26512686 26513002 -117273453 - AluSq SINE Alu -1 312 1 3271 249 77 46 chr12 26513002 26513323 -117273132 - L1MEc LINE L1 -5878 518 105 1854 172 0 0 chr12 26513323 26513619 -117272836 - AluSx SINE Alu -5 307 12 3271 249 77 46 chr12 26513619 26513693 -117272762 - L1MEc LINE L1 -6291 105 35 29 0 0 0 chr12 26516004 26516033 -117270422 + AT_rich Low_complexity Low_complexity 1 29 0 1814 153 0 3 chr12 26516034 26516322 -117270133 - AluJb SINE Alu -25 287 1 915 313 58 12 chr12 26516338 26516770 -117269685 - LTR16B LTR ERVL -12 452 1 1366 189 134 22 chr12 26517715 26518074 -117268381 + MLT1D LTR MaLR 1 399 -106 197 313 16 0 chr12 26519571 26519635 -117266820 - L2 LINE L2 -4 3268 3204 216 0 0 0 chr12 26519635 26519659 -117266796 + (TAA)n Simple_repeat Simple_repeat 3 26 0 496 149 23 0 chr12 26519727 26519814 -117266641 - Tigger7 DNA MER2_type -3 2488 2400 436 160 245 0 chr12 26519813 26519919 -117266536 - Tigger7 DNA MER2_type -212 521 390 * 2235 168 10 5 chr12 26520169 26520561 -117265894 - Tigger7 DNA MER2_type -2093 394 1 478 273 25 66 chr12 26520561 26520759 -117265696 - MIR SINE MIR -64 198 9 546 223 198 0 chr12 26521300 26521351 -117265104 + MER5A DNA MER1_type 1 41 -148 2091 223 37 29 chr12 26521351 26521867 -117264588 + MLT2B1 LTR ERVL 1 520 0 546 223 198 0 chr12 26521867 26521972 -117264483 + MER5A DNA MER1_type 41 188 -1 198 281 11 79 chr12 26521893 26521982 -117264473 - MER5A DNA MER1_type -99 90 8 * 233 233 41 41 chr12 26522910 26522983 -117263472 - L2 LINE L2 0 3313 3241 220 307 31 71 chr12 26523108 26523153 -117263302 - MIR SINE MIR -12 250 205 2565 128 34 2 chr12 26523153 26523568 -117262887 - MSTA LTR MaLR 0 428 1 220 307 31 71 chr12 26523568 26523649 -117262806 - MIR SINE MIR -57 205 129 1936 158 20 18 chr12 26524334 26524676 -117261779 - MER2 DNA MER2_type 0 344 2 285 335 183 35 chr12 26524731 26525416 -117261039 + L2 LINE L2 2287 3064 -208 248 299 118 24 chr12 26525624 26525751 -117260704 + L2 LINE L2 3133 3271 -1 387 326 61 22 chr12 26525957 26526138 -117260317 + MIR SINE MIR 20 207 -55 1898 148 47 18 chr12 26526810 26527148 -117259307 - MER7A DNA MER2_type 0 346 1 1610 158 20 43 chr12 26528023 26528187 -117258268 - AluJo SINE Alu -15 297 142 2327 54 0 60 chr12 26528187 26528504 -117257951 - AluY SINE Alu -13 298 1 1610 158 20 43 chr12 26528504 26528643 -117257812 - AluJo SINE Alu -170 142 1 1523 232 83 51 chr12 26528837 26529367 -117257088 - L2 LINE L2 -354 2960 2414 181 385 11 11 chr12 26529477 26529568 -117256887 - MIR SINE MIR -152 110 20 538 323 18 0 chr12 26531029 26531196 -117255259 - MIR3 SINE MIR -8 200 31 235 353 165 5 chr12 26531409 26531627 -117254828 + L2 LINE L2 2397 2649 -665 295 270 11 98 chr12 26531685 26531859 -117254596 + MLT1J LTR MaLR 112 270 -241 200 366 73 26 chr12 26532050 26532241 -117254214 + L2 LINE L2 2770 2969 -345 2252 138 20 81 chr12 26532425 26532881 -117253574 - MSTA LTR MaLR 0 428 1 191 119 0 71 chr12 26532949 26532991 -117253464 + L2 LINE L2 3229 3267 -5 390 284 69 76 chr12 26533693 26533968 -117252487 + L1ME2 LINE L1 5891 6163 -1 723 243 225 16 chr12 26533973 26534455 -117252000 + L1ME3A LINE L1 5275 5867 -295 8868 182 38 69 chr12 26535153 26536992 -117249463 + L1M1 LINE L1 12 1775 -5790 369 0 0 0 chr12 26536992 26537033 -117249422 + (GA)n Simple_repeat Simple_repeat 2 42 0 8868 182 38 69 chr12 26537033 26537363 -117249092 + L1M1 LINE L1 1775 2114 -5451 2902 254 54 19 chr12 26537376 26538383 -117248072 + L1PBa LINE L1 6 1047 -5816 336 48 0 0 chr12 26539111 26539153 -117247302 + (CA)n Simple_repeat Simple_repeat 2 43 0 1190 180 20 46 chr12 26539408 26539713 -117246742 + L1MA9 LINE L1 6011 6307 -5 588 279 60 17 chr12 26540343 26540651 -117245804 - MLT1G1 LTR MaLR -184 358 68 372 294 20 0 chr12 26543455 26543557 -117242898 + MER5A DNA MER1_type 3 106 -83 20062 45 51 3 chr12 26544739 26547436 -117239019 + L1PA2 LINE L1 2 2827 -3319 14337 24 0 0 chr12 26547436 26549888 -117236567 + L1PA2 LINE L1 3700 6153 -2 876 150 0 0 chr12 26549995 26550128 -117236327 + FLAM_C SINE Alu 1 133 0 1903 134 24 10 chr12 26550603 26550895 -117235560 - AluJb SINE Alu -12 300 5 6266 209 37 9 chr12 26550914 26553265 -117233190 - L1MB8 LINE L1 -125 6864 4443 785 154 68 25 chr12 26553242 26553444 -117233011 - L1M4 LINE L1 -723 6266 6057 * 1373 235 40 34 chr12 26553493 26553969 -117232486 - L1MB8 LINE L1 -5025 1830 1352 13769 197 39 12 chr12 26553979 26555857 -117230598 - L1PB1 LINE L1 0 6867 5041 2307 103 6 3 chr12 26555857 26556168 -117230287 - AluSp SINE Alu -1 312 1 13769 197 39 12 chr12 26556168 26560824 -117225631 - L1PB1 LINE L1 -1826 5041 6 3491 282 56 40 chr12 26560832 26562182 -117224273 - L1MB8 LINE L1 -5487 1372 1 1904 210 83 7 chr12 26562189 26562647 -117223808 - MLT1D LTR MaLR 0 505 13 206 390 10 10 chr12 26562685 26562785 -117223670 - MIR SINE MIR -68 140 41 2739 23 3 0 chr12 26562989 26563299 -117223156 - AluY SINE Alu 0 311 1 189 214 0 0 chr12 26564748 26564790 -117221665 + (TA)n Simple_repeat Simple_repeat 1 42 0 331 269 0 10 chr12 26564790 26564894 -117221561 - L1ME3A LINE L1 -20 6150 6048 194 220 17 0 chr12 26566053 26566112 -117220343 + (TG)n Simple_repeat Simple_repeat 1 60 0 2333 121 0 13 chr12 26567545 26567859 -117218596 - AluSx SINE Alu -2 310 1 185 0 40 0 chr12 26568336 26568361 -117218094 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 234 254 0 0 chr12 26568458 26568513 -117217942 + L2 LINE L2 3257 3311 -2 857 292 211 13 chr12 26568915 26569298 -117217157 + L2 LINE L2 2340 2798 -516 309 302 93 8 chr12 26569323 26569452 -117217003 + L2 LINE L2 3165 3304 -9 336 221 26 0 chr12 26569514 26569591 -117216864 + L1MA9 LINE L1 6002 6080 -232 452 208 28 0 chr12 26569594 26569700 -117216755 + L1MA9 LINE L1 6180 6288 -24 23 33 0 0 chr12 26569701 26569731 -117216724 + AT_rich Low_complexity Low_complexity 1 30 0 802 219 0 0 chr12 26569738 26569884 -117216571 + FRAM SINE Alu 1 146 -30 284 283 44 18 chr12 26569965 26570078 -117216377 - L2 LINE L2 -34 3279 3164 * 623 268 72 25 chr12 26570077 26570312 -117216143 + MIR SINE MIR 8 253 -9 360 290 0 0 chr12 26570712 26570805 -117215650 + G-rich Low_complexity Low_complexity 1 93 0 8085 147 29 9 chr12 26570807 26572471 -117213984 + L1PBa LINE L1 886 2782 -4081 8359 199 14 9 chr12 26572477 26574305 -117212150 + L1 LINE L1 2827 4664 -2198 15333 153 35 6 chr12 26574310 26575639 -117210816 + L1MA2 LINE L1 2863 4153 -3570 2394 120 19 6 chr12 26575639 26575998 -117210457 + THE1B LTR MaLR 1 364 0 15333 153 35 6 chr12 26575998 26579392 -117207063 + L1MA2 LINE L1 4153 7723 0 1117 119 31 0 chr12 26579568 26579762 -117206693 - L1MA4 LINE L1 -5 6295 6096 209 33 33 0 chr12 26580068 26580098 -117206357 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 608 174 31 0 chr12 26581071 26581169 -117205286 - 7SLRNA srpRNA srpRNA -14 306 206 289 242 116 0 chr12 26581421 26581516 -117204939 - L2 LINE L2 -78 3235 3130 195 42 0 0 chr12 26581776 26581800 -117204655 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 26582101 26582122 -117204333 + AT_rich Low_complexity Low_complexity 1 21 0 42179 41 26 2 chr12 26582122 26588131 -117198324 - L1PA4 LINE L1 -3 6152 2 3770 199 20 31 chr12 26588131 26589196 -117197259 - L1MEc LINE L1 -3035 3180 2170 * 3833 245 100 20 chr12 26589181 26590596 -117195859 - L1MEc LINE L1 -4822 1462 38 247 314 119 8 chr12 26592163 26592281 -117194174 + L1ME LINE L1 5513 5643 -478 339 293 63 59 chr12 26592865 26593353 -117193102 + L1ME LINE L1 895 1253 -4866 608 308 174 20 chr12 26593466 26593498 -117192957 + L1ME LINE L1 4612 4638 -1491 2479 221 48 23 chr12 26593498 26594109 -117192346 - MLT1E2 LTR MaLR 0 626 1 608 308 174 20 chr12 26594109 26594566 -117191889 + L1ME LINE L1 4638 5176 -953 340 281 77 18 chr12 26594637 26594869 -117191586 + L1ME LINE L1 5258 5504 -645 544 340 167 25 chr12 26594964 26596284 -117190171 - L2 LINE L2 -464 2850 1344 522 219 44 0 chr12 26596518 26596632 -117189823 + MIR SINE MIR 82 200 -62 864 233 84 13 chr12 26596735 26597044 -117189411 - MER46C DNA MER2_type -3 335 5 263 293 0 0 chr12 26597049 26597131 -117189324 + L1MC4 LINE L1 6614 6695 -1347 234 0 0 0 chr12 26597131 26597157 -117189298 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 270 0 0 0 chr12 26597156 26597186 -117189269 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 137 20 0 chr12 26598908 26598959 -117187496 - L1PB1 LINE L1 -3 6148 6097 475 168 17 10 chr12 26598959 26599079 -117187376 - L1MB1 LINE L1 -339 5850 5729 275 267 147 17 chr12 26599372 26599488 -117186967 - L2 LINE L2 0 3313 3183 237 293 98 0 chr12 26600221 26600303 -117186152 - L2 LINE L2 -32 3281 3192 244 362 49 56 chr12 26600462 26600749 -117185706 - L2 LINE L2 0 3272 2988 314 312 23 50 chr12 26600768 26600989 -117185466 + L2 LINE L2 2809 3023 -249 2323 89 7 0 chr12 26601496 26601799 -117184656 + AluSg SINE Alu 1 305 -5 306 330 31 10 chr12 26602255 26602352 -117184103 - MIR SINE MIR -78 130 32 189 372 22 44 chr12 26603187 26603324 -117183131 - MIR SINE MIR -82 180 47 4489 181 54 20 chr12 26603415 26604650 -117181805 + L1MA9 LINE L1 4960 6239 -73 297 0 0 0 chr12 26604650 26604683 -117181772 + (TA)n Simple_repeat Simple_repeat 1 33 0 4489 181 54 20 chr12 26604683 26604719 -117181736 + L1MA9 LINE L1 6239 6272 -40 2428 66 0 7 chr12 26605214 26605519 -117180936 - AluY SINE Alu -8 303 1 188 200 71 129 chr12 26606186 26606271 -117180184 + L2 LINE L2 3234 3313 0 183 42 0 0 chr12 26607086 26607110 -117179345 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1212 48 0 0 chr12 26607111 26607256 -117179199 - L1PA3 LINE L1 -18 6137 5993 2187 23 0 0 chr12 26607256 26607626 -117178829 - L1P1 LINE L1 -635 5520 5151 195 214 36 36 chr12 26607659 26607715 -117178740 + MIR3 SINE MIR 112 167 -41 315 346 78 25 chr12 26608841 26609084 -117177371 - L1MC4a LINE L1 -1805 6003 5748 37 39 0 0 chr12 26609108 26609159 -117177296 + AT_rich Low_complexity Low_complexity 1 51 0 413 330 42 11 chr12 26609284 26609545 -117176910 - L1MC4a LINE L1 -2164 5644 5376 22 80 0 0 chr12 26609573 26609623 -117176832 + AT_rich Low_complexity Low_complexity 1 50 0 2170 83 9 23 chr12 26609625 26609961 -117176494 - L1MA1 LINE L1 -100 6202 5871 304 220 66 11 chr12 26609972 26610063 -117176392 - L1 LINE L1 -1139 5007 4912 745 287 124 55 chr12 26610112 26610672 -117175783 - L1 LINE L1 -1304 4842 4216 1671 176 40 0 chr12 26610672 26610977 -117175478 - AluSx SINE Alu 0 316 1 745 287 124 55 chr12 26610977 26611157 -117175298 - L1 LINE L1 -1930 4216 4050 21 0 0 0 chr12 26611902 26611923 -117174532 + AT_rich Low_complexity Low_complexity 1 21 0 469 305 58 0 chr12 26612146 26612320 -117174135 + MER112 DNA MER1_type 77 260 0 330 334 85 47 chr12 26612348 26612663 -117173792 - L2 LINE L2 -222 3050 2730 405 339 81 19 chr12 26612770 26613030 -117173425 + L2 LINE L2 2229 2504 -810 398 344 121 39 chr12 26613053 26613548 -117172907 + L2 LINE L2 2725 3266 -6 212 274 0 27 chr12 26613670 26613743 -117172712 + GA-rich Low_complexity Low_complexity 4 74 0 537 270 14 19 chr12 26613750 26613965 -117172490 + L1ME3A LINE L1 1224 1437 -4959 492 326 67 19 chr12 26613967 26614237 -117172218 + L1ME3A LINE L1 1535 1817 -4579 1602 226 46 22 chr12 26614312 26614768 -117171687 - MLT1C LTR MaLR 0 467 1 2414 78 0 0 chr12 26614934 26615229 -117171226 + AluSq SINE Alu 1 295 -18 304 198 37 0 chr12 26615232 26615313 -117171142 - L1 LINE L1 -3185 2961 2878 728 219 172 47 chr12 26615313 26615656 -117170799 + L1ME3A LINE L1 3848 4233 -1982 * 1601 272 41 39 chr12 26615645 26616208 -117170247 + L1ME3A LINE L1 5664 6227 -12 485 286 258 13 chr12 26616567 26616885 -117169570 + MLT1J LTR MaLR 78 473 -38 357 260 184 20 chr12 26616979 26617168 -117169287 + L1MC4 LINE L1 7689 7846 -196 2107 119 14 0 chr12 26617168 26617463 -117168992 + AluSq SINE Alu 3 301 -12 357 260 184 20 chr12 26617463 26617577 -117168878 + L1MC4 LINE L1 7846 8042 0 26 0 0 0 chr12 26620512 26620538 -117165917 + AT_rich Low_complexity Low_complexity 1 26 0 207 397 140 0 chr12 26621680 26621816 -117164639 - MIR3 SINE MIR -14 194 40 537 255 56 37 chr12 26622661 26622822 -117163633 - MIR SINE MIR -92 170 7 2031 150 0 3 chr12 26623051 26623358 -117163097 + AluSx SINE Alu 1 306 -6 1633 162 67 7 chr12 26624987 26625271 -117161184 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr12 26626060 26626082 -117160373 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 26626486 26626509 -117159946 + AT_rich Low_complexity Low_complexity 1 23 0 2193 109 0 0 chr12 26626532 26626825 -117159630 - AluSx SINE Alu -18 294 2 1607 159 74 21 chr12 26626840 26627166 -117159289 - MER61A LTR ERV1 0 343 1 2018 163 45 16 chr12 26627166 26627613 -117158842 + L1MB4 LINE L1 5684 6143 -37 336 48 0 0 chr12 26629058 26629100 -117157355 + (CA)n Simple_repeat Simple_repeat 2 43 0 1190 180 20 46 chr12 26629355 26629660 -117156795 + L1MA9 LINE L1 6011 6307 -5 588 279 60 17 chr12 26630290 26630598 -117155857 - MLT1G1 LTR MaLR -184 358 68 372 294 20 0 chr12 26633404 26633506 -117152949 + MER5A DNA MER1_type 3 106 -83 20068 45 51 3 chr12 26634688 26637384 -117149071 + L1PA2 LINE L1 2 2827 -3319 14337 24 0 0 chr12 26637384 26639836 -117146619 + L1PA2 LINE L1 3700 6153 -2 876 150 0 0 chr12 26639943 26640076 -117146379 + FLAM_C SINE Alu 1 133 0 2226 120 0 3 chr12 26640551 26640852 -117145603 - AluSx SINE Alu -12 300 1 1949 137 11 0 chr12 26640915 26641199 -117145256 - AluJo SINE Alu -25 287 1 378 0 0 0 chr12 26642434 26642476 -117143979 + (TG)n Simple_repeat Simple_repeat 1 42 0 856 265 118 43 chr12 26642905 26643369 -117143086 - L2 LINE L2 -11 3302 2804 307 212 61 81 chr12 26643913 26644012 -117142443 - MER91B DNA MER1_type -1 189 93 506 238 49 8 chr12 26644027 26644149 -117142306 - MER91B DNA MER1_type -60 130 4 10177 72 3 5 chr12 26644202 26645544 -117140911 + HERVL LTR ERVL 3965 5304 -350 2119 101 3 7 chr12 26645544 26645830 -117140625 - AluSq SINE Alu -18 295 11 2026 33 17 43 chr12 26645830 26646130 -117140325 + HERVL-A1 LTR ERVL 5363 5654 0 2748 61 24 16 chr12 26646130 26646507 -117139948 + MLT2A1 LTR ERVL 1 380 -64 979 82 0 0 chr12 26646570 26646705 -117139750 + HERVL LTR ERVL 5092 5226 -428 222 323 0 0 chr12 26646980 26647042 -117139413 + CT-rich Low_complexity Low_complexity 2 63 0 184 344 0 16 chr12 26647616 26647677 -117138778 - MIR3 SINE MIR -17 191 132 * 542 271 42 57 chr12 26647661 26647853 -117138602 + MIR SINE MIR 59 247 -15 24 0 0 0 chr12 26648790 26648814 -117137641 + AT_rich Low_complexity Low_complexity 1 24 0 550 285 101 74 chr12 26649226 26649552 -117136903 + MLT1J LTR MaLR 133 467 -44 1999 75 86 25 chr12 26649755 26650034 -117136421 + AluSq SINE Alu 1 296 -17 23 33 0 0 chr12 26650281 26650311 -117136144 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr12 26650397 26650437 -117136018 + AT_rich Low_complexity Low_complexity 1 40 0 569 278 99 14 chr12 26650443 26650878 -117135577 + L1ME3A LINE L1 5697 6164 -6 1492 186 50 7 chr12 26650887 26651166 -117135289 + AluJb SINE Alu 1 291 -21 942 192 21 1 chr12 26651277 26651629 -117134826 + MSTD LTR MaLR 1 396 0 368 268 162 14 chr12 26652732 26652874 -117133581 + MER5A DNA MER1_type 24 186 -3 535 248 24 0 chr12 26653427 26653552 -117132903 + L1ME3A LINE L1 6034 6161 -9 1264 124 0 69 chr12 26653668 26653885 -117132570 + AluJo SINE Alu 5 206 -106 621 232 39 32 chr12 26655147 26655302 -117131153 + MIR SINE MIR 86 241 -21 729 217 189 0 chr12 26655429 26655641 -117130814 - MIR SINE MIR -4 258 7 416 290 65 7 chr12 26655880 26656018 -117130437 - MIR SINE MIR -18 244 99 268 253 13 40 chr12 26656033 26656108 -117130347 + MIR SINE MIR 159 231 -31 33 66 0 0 chr12 26656376 26656437 -117130018 + AT_rich Low_complexity Low_complexity 1 61 0 2762 181 34 2 chr12 26657078 26657580 -117128875 - LTR53 LTR ERVL -1 518 1 230 323 0 0 chr12 26658246 26658308 -117128147 - L2 LINE L2 -6 3307 3246 2194 80 24 6 chr12 26658359 26658635 -117127820 + L1PA4 LINE L1 4552 4837 -1309 7499 30 1 0 chr12 26658635 26659523 -117126932 + L1PA4 LINE L1 5263 6155 0 2194 80 24 6 chr12 26659523 26659584 -117126871 + L1PA4 LINE L1 4837 4895 -1251 2551 234 72 64 chr12 26659589 26660545 -117125910 + L1MEc LINE L1 35 1001 -5395 2036 125 10 0 chr12 26660545 26660840 -117125615 - AluSx SINE Alu -14 298 1 2551 234 72 64 chr12 26660840 26660893 -117125562 + L1MEc LINE L1 1001 1052 -5344 879 258 76 89 chr12 26660919 26661469 -117124986 - MER68 LTR ERV1 -19 543 1 359 200 0 0 chr12 26661469 26661554 -117124901 + L1MEc LINE L1 1074 1158 -5238 427 286 44 30 chr12 26661927 26662127 -117124328 - MIR SINE MIR -50 212 15 409 284 9 0 chr12 26662449 26662565 -117123890 - MER117 DNA MER1_type -72 125 9 862 273 52 13 chr12 26662586 26662817 -117123638 + MIR SINE MIR 2 241 -21 453 296 74 22 chr12 26663085 26663315 -117123140 + L1ME4a LINE L1 5734 5975 -146 287 203 39 88 chr12 26663383 26663565 -117122890 + L1ME4a LINE L1 5935 6107 -14 22 0 0 0 chr12 26663775 26663797 -117122658 + AT_rich Low_complexity Low_complexity 1 22 0 853 69 35 0 chr12 26663855 26663971 -117122484 - L1PA16 LINE L1 -9 6157 6038 895 258 32 16 chr12 26665348 26665600 -117120855 + MIR SINE MIR 5 260 -2 216 252 149 47 chr12 26665861 26665968 -117120487 - L2 LINE L2 -219 3053 2936 461 299 85 41 chr12 26666743 26667121 -117119334 + L1MC4a LINE L1 5662 5912 -252 8216 164 18 10 chr12 26667352 26669798 -117116657 - L1PA16 LINE L1 -1 6165 3704 1903 117 78 0 chr12 26669798 26670079 -117116376 + AluSq SINE Alu 1 303 -10 8216 164 18 10 chr12 26670079 26670220 -117116235 - L1PA16 LINE L1 -2462 3704 3566 732 203 0 86 chr12 26670222 26670444 -117116011 + L1PA16 LINE L1 3363 3565 -2581 359 277 139 59 chr12 26670738 26670976 -117115479 - L1M2 LINE L1 -5797 1052 796 1005 269 79 51 chr12 26671114 26672142 -117114313 - L1PA12 LINE L1 -5501 2080 10 230 203 0 85 chr12 26672165 26672224 -117114231 - LTR33A LTR ERVL -3 520 467 1670 57 33 0 chr12 26672231 26672443 -117114012 + AluY SINE Alu 93 311 0 506 241 80 5 chr12 26672453 26672652 -117113803 + L1MC5 LINE L1 6963 7176 -785 * 5292 91 33 7 chr12 26672648 26673466 -117112989 - L1PA13 LINE L1 -2 6161 5323 668 93 26 130 chr12 26673456 26673632 -117112823 - L1P LINE L1 -755 5391 5236 * 2365 118 8 8 chr12 26673633 26673988 -117112467 - THE1A LTR MaLR 0 355 1 2149 94 10 0 chr12 26673988 26674295 -117112160 - THE1A-int LTR MaLR 0 1580 1271 * 5146 167 64 31 chr12 26674289 26675433 -117111022 + L1MC3 LINE L1 6596 7777 -8 2307 87 0 3 chr12 26675469 26675767 -117110688 - AluY SINE Alu -14 297 1 340 289 0 10 chr12 26675828 26675925 -117110530 + L1MC5 LINE L1 7790 7885 -76 366 224 208 0 chr12 26676973 26677098 -117109357 + MER103 DNA DNA 9 159 -7 198 103 0 0 chr12 26677450 26677479 -117108976 + (A)n Simple_repeat Simple_repeat 1 29 0 391 294 38 21 chr12 26677918 26678294 -117108161 + L1MCc LINE L1 1181 1729 -4892 301 370 52 35 chr12 26678322 26678495 -117107960 + L1MCc LINE L1 1686 1861 -5082 5727 149 11 38 chr12 26678496 26678794 -117107661 + L1PB3 LINE L1 4125 4429 -1725 296 104 0 0 chr12 26678794 26678842 -117107613 - MADE1 DNA Mariner 0 80 33 5727 149 11 38 chr12 26678842 26680586 -117105869 + L1PB3 LINE L1 4429 6153 -1 790 287 100 10 chr12 26680658 26681151 -117105304 + L1MCc LINE L1 1849 2468 -4550 334 222 76 38 chr12 26681176 26681361 -117105094 + L1MCc LINE L1 2845 3036 -4086 389 225 0 0 chr12 26681384 26681464 -117104991 + Tigger5 DNA MER2_type 2 81 -2242 302 257 0 0 chr12 26681462 26681532 -117104923 - Tigger5 DNA MER2_type -12 2311 2242 * 363 133 17 0 chr12 26681524 26681584 -117104871 + Tigger5 DNA MER2_type 2244 2304 -19 233 197 60 68 chr12 26681605 26681656 -117104799 + L1MCc LINE L1 3025 3075 -3866 1356 142 19 11 chr12 26681656 26681923 -117104532 + L1MA9 LINE L1 6044 6312 0 233 197 60 68 chr12 26681923 26681988 -117104467 + L1MCc LINE L1 3075 3140 -3801 2185 311 52 28 chr12 26681992 26683148 -117103307 + HERV16 LTR ERVL 1386 2631 -2365 595 198 0 0 chr12 26683185 26683291 -117103164 + Tigger7 DNA MER2_type 1 106 -599 2154 158 72 17 chr12 26683443 26683915 -117102540 + Tigger7 DNA MER2_type 107 2486 -1 553 204 30 15 chr12 26683915 26684047 -117102408 + HERV16 LTR ERVL 2666 2799 -2197 2538 231 32 75 chr12 26684068 26684909 -117101546 - MER21B LTR ERV1 -57 806 2 3097 316 36 48 chr12 26684910 26686745 -117099710 + HERV16 LTR ERVL 2833 4645 -1119 1304 71 44 0 chr12 26686954 26687137 -117099318 - L1PA8 LINE L1 -3 6169 5979 278 297 210 31 chr12 26687239 26687434 -117099021 + L3 LINE CR1 1341 1570 -7 27 0 0 0 chr12 26687684 26687711 -117098744 + AT_rich Low_complexity Low_complexity 1 27 0 255 307 0 11 chr12 26688646 26688734 -117097721 + GA-rich Low_complexity Low_complexity 2 88 0 2278 101 3 0 chr12 26688889 26689187 -117097268 + AluSq SINE Alu 1 299 -14 218 207 73 85 chr12 26691397 26691479 -117094976 + MIR SINE MIR 26 106 -156 222 91 0 0 chr12 26691686 26691719 -117094736 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1658 162 0 8 chr12 26691807 26692095 -117094360 - AluJo SINE Alu 0 317 32 600 171 26 0 chr12 26692105 26692222 -117094233 - MER3 DNA MER1_type -88 121 2 2245 193 38 36 chr12 26692285 26692538 -117093917 + L1MC4 LINE L1 7316 7567 -475 2144 103 0 0 chr12 26692538 26692854 -117093601 + AluSx SINE Alu 2 317 0 2245 193 38 36 chr12 26692854 26693153 -117093302 + L1MC4 LINE L1 7567 7870 -172 2431 222 94 40 chr12 26693497 26694338 -117092117 + L1ME1 LINE L1 782 1653 -4753 2272 86 0 3 chr12 26694338 26694628 -117091827 - AluSc SINE Alu -18 291 3 2431 222 94 40 chr12 26694628 26694889 -117091566 + L1ME1 LINE L1 1653 1899 -4507 2468 240 62 16 chr12 26694892 26695868 -117090587 + L1ME1 LINE L1 4726 5755 -743 1085 153 21 153 chr12 26695882 26696268 -117090187 + L1 LINE L1 3290 3624 -2522 2447 244 25 15 chr12 26696270 26696937 -117089518 + L1ME1 LINE L1 5735 6408 -18 622 228 15 20 chr12 26696971 26697026 -117089429 + L1MC4 LINE L1 7847 7901 -141 302 60 0 40 chr12 26697026 26697076 -117089379 + (TAGG)n Simple_repeat Simple_repeat 4 51 0 622 228 15 20 chr12 26697076 26697217 -117089238 + L1MC4 LINE L1 7901 8042 0 1215 92 10 77 chr12 26697234 26697430 -117089025 - AluSg/x SINE Alu -15 297 115 232 147 0 0 chr12 26698112 26698146 -117088309 + Alu SINE Alu 1 34 -267 4453 135 32 58 chr12 26698146 26699353 -117087102 - pTR5 LTR ERV1 0 2606 1524 9170 97 13 1 chr12 26700022 26701291 -117085164 + HSMAR1 DNA Mariner 3 1287 0 407 327 127 23 chr12 26702832 26703132 -117083323 + L2 LINE L2 2150 2480 -834 707 336 90 36 chr12 26704505 26704691 -117081764 - L2 LINE L2 -404 2910 2736 1905 169 0 0 chr12 26704691 26704987 -117081468 - AluJb SINE Alu -16 296 1 707 336 90 36 chr12 26704987 26705333 -117081122 - L2 LINE L2 -578 2736 2349 198 0 0 0 chr12 26705626 26705648 -117080807 + (TAA)n Simple_repeat Simple_repeat 2 23 0 304 192 154 0 chr12 26705899 26705977 -117080478 - L1ME4a LINE L1 -35 6086 5997 581 329 49 23 chr12 26706350 26706657 -117079798 + L2 LINE L2 2170 2484 -830 247 332 205 0 chr12 26706693 26706883 -117079572 - MIR SINE MIR -16 246 18 332 300 72 56 chr12 26707726 26707976 -117078479 + L2 LINE L2 2664 2917 -397 1389 352 70 27 chr12 26708746 26709912 -117076543 + L2 LINE L2 1761 2977 -337 465 351 32 63 chr12 26709918 26710203 -117076252 - L2 LINE L2 -2 3270 2995 1251 112 107 0 chr12 26710834 26711039 -117075416 - MER30 DNA MER1_type 0 230 4 2247 112 0 0 chr12 26711314 26711608 -117074847 + AluSq SINE Alu 1 294 -19 2134 129 0 13 chr12 26712822 26713133 -117073322 + AluSx SINE Alu 2 308 -4 251 301 0 0 chr12 26713156 26713229 -117073226 + (TA)n Simple_repeat Simple_repeat 2 74 0 460 301 166 10 chr12 26713914 26714113 -117072342 - MIR SINE MIR -13 249 20 235 322 11 0 chr12 26714196 26714286 -117072169 + MLT1I LTR MaLR 65 155 -254 247 165 113 122 chr12 26714348 26714463 -117071992 + LTR33 LTR ERVL 150 263 -258 313 264 56 16 chr12 26714529 26714654 -117071801 + LTR33 LTR ERVL 390 519 -2 605 273 120 5 chr12 26714774 26714990 -117071465 - MIR SINE MIR -19 243 3 375 313 147 38 chr12 26715962 26716173 -117070282 - MIR SINE MIR 0 262 29 495 0 0 0 chr12 26717014 26717069 -117069386 + (GA)n Simple_repeat Simple_repeat 1 55 0 326 169 0 17 chr12 26717649 26717708 -117068747 + MER81 DNA DNA 8 65 -49 25 0 0 0 chr12 26718534 26718559 -117067896 + AT_rich Low_complexity Low_complexity 1 25 0 33 0 0 0 chr12 26718767 26718800 -117067655 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr12 26718825 26718876 -117067579 + AT_rich Low_complexity Low_complexity 1 51 0 2735 20 0 0 chr12 26718956 26719260 -117067195 - AluYb8 SINE Alu -14 304 1 1460 176 0 4 chr12 26719600 26719861 -117066594 + L1PA6 LINE L1 10 269 -6192 * 29527 66 4 3 chr12 26719852 26725242 -117061213 + L1PA6 LINE L1 1074 6469 0 21 36 0 0 chr12 26725937 26725965 -117060490 + AT_rich Low_complexity Low_complexity 1 28 0 576 221 24 99 chr12 26726254 26726467 -117059988 - L2 LINE L2 0 3313 3117 181 234 0 117 chr12 26726589 26726666 -117059789 - L2 LINE L2 0 3272 3205 212 29 0 59 chr12 26727590 26727624 -117058831 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 180 158 0 0 chr12 26728751 26728789 -117057666 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr12 26729149 26729172 -117057283 + AT_rich Low_complexity Low_complexity 1 23 0 657 145 14 72 chr12 26729366 26729504 -117056951 - AluJb SINE Alu -178 134 5 1337 130 0 5 chr12 26730285 26730477 -117055978 + AluJb SINE Alu 109 299 -13 1279 172 28 31 chr12 26730477 26730768 -117055687 + MLT1B LTR MaLR 101 390 0 249 323 31 10 chr12 26731014 26731110 -117055345 + L2 LINE L2 3155 3252 -61 1328 127 0 0 chr12 26731114 26731311 -117055144 - L1PA13 LINE L1 -15 6148 5952 230 347 105 32 chr12 26732294 26732513 -117053942 + MIR SINE MIR 1 235 -27 2147 113 0 16 chr12 26733847 26734156 -117052299 + AluSg SINE Alu 1 304 -6 270 296 14 63 chr12 26734260 26734402 -117052053 - MIR3 SINE MIR -15 193 59 2068 108 3 56 chr12 26734757 26735080 -117051375 + AluSc SINE Alu 3 308 -1 416 197 87 24 chr12 26735375 26735502 -117050953 + Charlie7 DNA MER1_type 553 687 -1925 897 196 29 29 chr12 26735807 26735965 -117050490 + MER3 DNA MER1_type 1 161 -48 2381 96 0 0 chr12 26735965 26736268 -117050187 + AluSg SINE Alu 1 303 -7 897 196 29 29 chr12 26736268 26736318 -117050137 + MER3 DNA MER1_type 160 209 0 201 184 0 26 chr12 26736350 26736388 -117050067 + L2 LINE L2 3204 3240 -32 276 284 80 0 chr12 26737247 26737409 -117049046 + L1ME4a LINE L1 5944 6118 -3 275 48 0 24 chr12 26737491 26737533 -117048922 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr12 26737703 26737727 -117048728 + AT_rich Low_complexity Low_complexity 1 24 0 1487 165 45 36 chr12 26737948 26738257 -117048198 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 26739327 26739348 -117047107 + AT_rich Low_complexity Low_complexity 1 21 0 383 323 129 5 chr12 26739596 26739797 -117046658 - MIR SINE MIR -1 261 36 1722 334 116 29 chr12 26740045 26740982 -117045473 + L2 LINE L2 869 1956 -1358 1455 186 30 30 chr12 26740982 26741277 -117045178 - AluJb SINE Alu -17 295 1 1722 334 116 29 chr12 26741277 26741670 -117044785 + L2 LINE L2 1956 2314 -1000 694 236 74 35 chr12 26741709 26741967 -117044488 + MLT1L LTR MaLR 22 289 -326 678 306 108 56 chr12 26742020 26742501 -117043954 + L2 LINE L2 2804 3309 -4 1210 226 37 60 chr12 26742896 26743276 -117043179 - MLT1A2 LTR MaLR 0 374 4 288 235 148 35 chr12 26743939 26744054 -117042401 - MIR SINE MIR -86 176 49 1706 153 3 20 chr12 26744509 26744809 -117041646 + AluY SINE Alu 1 295 -16 23 0 0 0 chr12 26744859 26744882 -117041573 + AT_rich Low_complexity Low_complexity 1 23 0 662 138 0 0 chr12 26745163 26745257 -117041198 + AluSg/x SINE Alu 204 297 -13 1852 156 0 7 chr12 26745264 26745553 -117040902 + AluSx SINE Alu 1 287 -25 297 264 90 35 chr12 26746271 26746415 -117040040 + L3b LINE CR1 1102 1253 -330 2251 122 0 0 chr12 26746453 26746757 -117039698 + AluSx SINE Alu 1 304 -8 2300 119 0 0 chr12 26747682 26747984 -117038471 + AluSg SINE Alu 1 302 -8 375 161 0 92 chr12 26748016 26748103 -117038352 - AluJb SINE Alu -171 131 53 1484 69 19 5 chr12 26748103 26748319 -117038136 - pTR5 LTR ERV1 -2048 390 172 299 245 10 0 chr12 26748322 26748420 -117038035 - LTR30 LTR ERV1 -80 642 544 4020 122 65 83 chr12 26748424 26749428 -117037027 - pTR5 LTR ERV1 -417 2021 745 294 259 0 0 chr12 26749429 26749487 -117036968 - AluJb SINE Alu -244 58 1 307 286 58 18 chr12 26749777 26749948 -117036507 - LTR67 LTR ERVL -7 550 373 21 0 0 0 chr12 26750472 26750493 -117035962 + AT_rich Low_complexity Low_complexity 1 21 0 296 289 117 8 chr12 26751640 26751768 -117034687 - MIR SINE MIR -1 261 120 197 139 23 0 chr12 26751830 26751873 -117034582 + (TG)n Simple_repeat Simple_repeat 1 44 0 1166 155 130 8 chr12 26752183 26752454 -117034001 - L1ME1 LINE L1 -9 6157 5858 1064 198 18 0 chr12 26753179 26753401 -117033054 - L1MB7 LINE L1 0 6184 5959 23 0 0 0 chr12 26753504 26753527 -117032928 + AT_rich Low_complexity Low_complexity 1 23 0 2366 43 0 27 chr12 26754064 26754365 -117032090 + AluY SINE Alu 19 311 0 1367 225 111 53 chr12 26754559 26755071 -117031384 - MLT1F LTR MaLR 0 542 1 564 234 48 8 chr12 26755104 26755228 -117031227 - FLAM_C SINE Alu -13 130 2 2155 106 14 0 chr12 26755234 26755526 -117030929 - AluSq SINE Alu -17 296 1 31 76 0 0 chr12 26755557 26755623 -117030832 + AT_rich Low_complexity Low_complexity 1 66 0 731 130 0 0 chr12 26755938 26756038 -117030417 + AluJ/FLAM SINE Alu 1 100 -212 367 282 0 0 chr12 26756182 26756285 -117030170 + MER117 DNA MER1_type 52 154 -43 21 0 0 0 chr12 26756532 26756553 -117029902 + AT_rich Low_complexity Low_complexity 1 21 0 264 329 73 36 chr12 26756810 26756947 -117029508 - L2 LINE L2 -19 3253 3112 2154 110 3 23 chr12 26756967 26757277 -117029178 - AluSx SINE Alu -8 304 1 258 327 115 0 chr12 26757280 26757384 -117029071 + MIR SINE MIR 121 236 -26 1926 117 0 0 chr12 26758340 26758605 -117027850 + AluSq SINE Alu 1 265 -48 251 211 55 128 chr12 26758723 26758832 -117027623 - MIR SINE MIR -96 166 66 201 372 91 16 chr12 26758848 26758969 -117027486 + L2 LINE L2 3133 3262 -10 391 247 10 0 chr12 26759195 26759292 -117027163 + L1MC3 LINE L1 7045 7142 -643 1469 223 74 28 chr12 26759305 26759762 -117026693 + MLT2B1 LTR ERVL 1 478 -42 365 248 25 6 chr12 26759770 26759931 -117026524 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 242 190 52 0 chr12 26759934 26759992 -117026463 + MLT2B1 LTR ERVL 460 520 0 2503 196 62 9 chr12 26760003 26760581 -117025874 + L1MD3 LINE L1 7382 7990 -5 494 335 21 38 chr12 26761517 26761756 -117024699 - L3 LINE CR1 -36 1541 1307 298 261 80 0 chr12 26761806 26761894 -117024561 + L1MC/D LINE L1 5679 5773 -2035 567 188 7 13 chr12 26762010 26762159 -117024296 + GA-rich Low_complexity Low_complexity 3 150 0 4466 217 44 32 chr12 26762159 26762631 -117023824 + L1ME1 LINE L1 3952 4417 -1729 1565 146 40 80 chr12 26762631 26762954 -117023501 + AluSx SINE Alu 1 312 0 4466 217 44 32 chr12 26762954 26763829 -117022626 + L1ME1 LINE L1 4417 5315 -831 2292 202 75 31 chr12 26763833 26764510 -117021945 + L1MD2 LINE L1 5638 6344 -15 2270 151 36 7 chr12 26764532 26764943 -117021512 + L1MA5 LINE L1 5873 6295 -5 2644 216 69 41 chr12 26764945 26765379 -117021076 + L1ME1 LINE L1 5314 5734 -432 2270 94 0 3 chr12 26765379 26765678 -117020777 + AluY SINE Alu 1 298 -13 2644 216 69 41 chr12 26765678 26766068 -117020387 + L1ME1 LINE L1 5734 6161 -5 2100 90 0 4 chr12 26766257 26766524 -117019931 + AluSq SINE Alu 1 266 -47 287 283 28 9 chr12 26766638 26766744 -117019711 + L2 LINE L2 2553 2660 -654 743 310 53 59 chr12 26766758 26766895 -117019560 - MLT1K LTR MaLR -16 572 436 1684 162 40 14 chr12 26766895 26767191 -117019264 - AluJb SINE Alu -8 304 1 743 310 53 59 chr12 26767191 26767527 -117018928 - MLT1K LTR MaLR -152 436 102 401 334 51 80 chr12 26767618 26768220 -117018235 + L2 LINE L2 2667 3244 -28 2141 87 35 3 chr12 26769752 26770039 -117016416 - AluSg SINE Alu -14 296 1 2077 128 7 7 chr12 26770049 26770353 -117016102 - AluSx SINE Alu -3 309 6 219 140 0 0 chr12 26770522 26770572 -117015883 + (T)n Simple_repeat Simple_repeat 1 50 0 1851 167 94 25 chr12 26771164 26771601 -117014854 - MLT1C LTR MaLR 0 467 1 714 176 110 0 chr12 26771785 26771921 -117014534 + Tigger2 DNA MER2_type 2564 2714 -4 1261 162 113 11 chr12 26771926 26772192 -117014263 + L1MD1 LINE L1 5950 6242 0 629 67 11 0 chr12 26772193 26772283 -117014172 + L1PB2 LINE L1 6059 6149 -2 352 125 0 0 chr12 26772724 26772772 -117013683 - Tigger2 DNA MER2_type -2670 48 1 2700 186 25 13 chr12 26772775 26773571 -117012884 - L1MD1 LINE L1 -296 5946 4961 2259 72 0 69 chr12 26773573 26773892 -117012563 + AluY SINE Alu 1 297 -14 225 200 0 0 chr12 26773909 26773954 -117012501 + T-rich Low_complexity Low_complexity 1 45 0 995 253 63 9 chr12 26773954 26774270 -117012185 - L1MD1 LINE L1 -1198 4948 4616 2129 132 3 0 chr12 26774303 26774598 -117011857 + AluSx SINE Alu 1 296 -16 722 200 0 0 chr12 26774646 26774771 -117011684 + FLAM_C SINE Alu 2 126 -17 21 36 0 0 chr12 26774772 26774800 -117011655 + AT_rich Low_complexity Low_complexity 1 28 0 5784 230 52 22 chr12 26774817 26776392 -117010063 - L1MD1 LINE L1 -1578 4568 2946 534 309 111 61 chr12 26776799 26777161 -117009294 + MLT1K LTR MaLR 188 567 -21 794 291 72 56 chr12 26777228 26777674 -117008781 - MLT1K LTR MaLR 0 588 136 2287 81 3 14 chr12 26777912 26778209 -117008246 + AluY SINE Alu 1 294 -17 214 123 68 27 chr12 26778260 26778333 -117008122 + (TA)n Simple_repeat Simple_repeat 1 76 0 1541 136 0 0 chr12 26778399 26778619 -117007836 + AluSg/x SINE Alu 86 305 -7 1506 187 47 43 chr12 26778865 26779164 -117007291 + AluJb SINE Alu 1 300 -12 1406 169 112 0 chr12 26779306 26779566 -117006889 + AluJb SINE Alu 1 289 -13 29 0 0 0 chr12 26779566 26779595 -117006860 + AT_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr12 26780011 26780041 -117006414 + (ATG)n Simple_repeat Simple_repeat 1 30 0 222 317 133 17 chr12 26780194 26780314 -117006141 + MIR SINE MIR 6 140 -68 826 154 0 15 chr12 26780323 26780459 -117005996 + AluJo SINE Alu 1 134 -178 30 45 0 0 chr12 26780465 26780509 -117005946 + AT_rich Low_complexity Low_complexity 1 44 0 2148 87 28 10 chr12 26781691 26781979 -117004476 - AluSx SINE Alu -19 293 1 2262 94 13 3 chr12 26782038 26782336 -117004119 - AluY SINE Alu -10 301 1 1500 183 63 7 chr12 26782337 26782622 -117003833 - AluJo SINE Alu -11 301 1 24 32 0 0 chr12 26783139 26783170 -117003285 + AT_rich Low_complexity Low_complexity 1 31 0 2208 118 3 3 chr12 26783223 26783529 -117002926 + AluSx SINE Alu 1 306 -6 207 275 58 0 chr12 26783740 26783809 -117002646 + MIR3 SINE MIR 127 199 -9 1421 249 124 40 chr12 26784179 26784369 -117002086 - L1MD3 LINE L1 0 8041 7868 2323 79 17 0 chr12 26784369 26784660 -117001795 - AluSx SINE Alu -14 298 3 1421 249 124 40 chr12 26784660 26785075 -117001380 - L1MD3 LINE L1 -173 7868 7400 214 191 0 0 chr12 26785089 26785131 -117001324 + T-rich Low_complexity Low_complexity 1 42 0 3141 130 8 4 chr12 26785132 26785616 -117000839 - L1PA16 LINE L1 -2 6164 5679 2049 147 65 28 chr12 26785616 26786152 -117000303 + MLT2A2 LTR ERVL 2 554 0 5944 159 37 18 chr12 26786152 26786675 -116999780 - L1P4 LINE L1 -482 5684 5172 2330 105 0 3 chr12 26786675 26786988 -116999467 - AluSx SINE Alu 0 312 1 5944 159 37 18 chr12 26786988 26788006 -116998449 - L1P4 LINE L1 -994 5172 4119 2079 90 58 0 chr12 26788175 26788452 -116998003 - AluSg SINE Alu -17 293 1 26 0 0 0 chr12 26788452 26788478 -116997977 + AT_rich Low_complexity Low_complexity 1 26 0 1803 126 51 0 chr12 26788480 26788735 -116997720 - AluSx SINE Alu -44 268 1 2348 221 21 64 chr12 26788842 26789466 -116996989 - L1MDa LINE L1 -5925 615 19 1159 83 0 0 chr12 26789750 26789894 -116996561 + U4 snRNA snRNA 1 144 -1 1116 313 116 13 chr12 26789972 26790582 -116995873 + HAL1 LINE L1 37 709 -1798 1826 215 102 116 chr12 26790585 26790879 -116995576 + HAL1 LINE L1 1221 1518 -989 2330 83 3 17 chr12 26790879 26791181 -116995274 + AluY SINE Alu 1 298 -13 1826 215 102 116 chr12 26791181 26791453 -116995002 + HAL1 LINE L1 1518 1792 -715 2103 131 3 0 chr12 26791453 26791744 -116994711 + AluSg SINE Alu 1 292 -18 1826 215 102 116 chr12 26791744 26792287 -116994168 + HAL1 LINE L1 1792 2341 -166 2406 109 19 30 chr12 26792287 26792655 -116993800 - THE1B LTR MaLR 0 364 1 11814 96 6 2 chr12 26792655 26794228 -116992227 - THE1B-int LTR MaLR 0 1580 2 2430 111 11 27 chr12 26794229 26794599 -116991856 - THE1B LTR MaLR 0 364 1 1826 215 102 116 chr12 26794599 26794701 -116991754 + HAL1 LINE L1 2339 2420 -87 1452 201 40 11 chr12 26795514 26795637 -116990818 + AluJo SINE Alu 1 119 -193 375 78 0 0 chr12 26795637 26795688 -116990767 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1452 201 40 11 chr12 26795688 26795838 -116990617 + AluJo SINE Alu 119 282 -30 1987 205 63 17 chr12 26795838 26796317 -116990138 + L1MD3 LINE L1 7487 7987 -8 793 162 0 0 chr12 26796334 26796451 -116990004 + FLAM_C SINE Alu 1 117 -16 26 30 0 0 chr12 26796455 26796488 -116989967 + AT_rich Low_complexity Low_complexity 1 33 0 805 243 75 54 chr12 26796841 26797174 -116989281 + LTR33 LTR ERVL 182 521 0 540 171 0 38 chr12 26797320 26797451 -116989004 - AluJb SINE Alu 0 309 183 357 346 86 6 chr12 26797867 26798029 -116988426 - MIR SINE MIR -70 192 18 2030 122 0 21 chr12 26798148 26798481 -116987974 + AluSx SINE Alu 1 327 0 255 146 0 0 chr12 26798521 26798562 -116987893 + MER103 DNA DNA 3 43 -123 535 259 27 7 chr12 26798581 26798728 -116987727 + MER91B DNA MER1_type 36 185 -5 2269 96 3 0 chr12 26799186 26799505 -116986950 - AluSx SINE Alu 0 320 1 347 254 62 46 chr12 26799507 26799637 -116986818 - L2 LINE L2 -2 3311 3180 432 370 23 23 chr12 26799755 26800147 -116986308 - L2 LINE L2 -2440 874 483 185 294 88 0 chr12 26800181 26800249 -116986206 - L2 LINE L2 -2910 404 331 2105 98 35 0 chr12 26800665 26800951 -116985504 - AluSg SINE Alu -14 296 1 540 280 55 25 chr12 26801361 26801597 -116984858 - MIR SINE MIR 0 262 20 1557 86 5 0 chr12 26801597 26801807 -116984648 - pTR5 LTR ERV1 -2047 391 181 372 171 64 82 chr12 26801807 26801918 -116984537 - LTR30 LTR ERV1 -70 724 544 4635 130 61 79 chr12 26801918 26802933 -116983522 - pTR5 LTR ERV1 -413 2025 743 2378 97 0 0 chr12 26803035 26803345 -116983110 - AluY SINE Alu -1 310 1 1279 90 150 0 chr12 26803483 26803683 -116982772 - MER30 DNA MER1_type 0 230 1 1232 150 0 42 chr12 26803759 26803952 -116982503 + AluJo SINE Alu 1 185 -127 1341 182 50 59 chr12 26804374 26804614 -116981841 - MLT1B LTR MaLR 0 390 149 2273 92 0 0 chr12 26804614 26804918 -116981537 - AluSx SINE Alu 0 304 1 1341 182 50 59 chr12 26804918 26804930 -116981525 - MLT1B LTR MaLR -241 149 138 1989 125 40 7 chr12 26804930 26805226 -116981229 - AluSx SINE Alu -2 310 5 1341 182 50 59 chr12 26805226 26805432 -116981023 - MLT1B LTR MaLR -252 138 1 459 0 0 0 chr12 26808626 26808677 -116977778 + (TG)n Simple_repeat Simple_repeat 2 52 0 314 282 194 5 chr12 26809359 26809565 -116976890 - MIR SINE MIR -1 261 17 1697 196 0 0 chr12 26809935 26810241 -116976214 + AluJb SINE Alu 1 306 -6 212 296 62 0 chr12 26810541 26810622 -116975833 + MIR SINE MIR 58 143 -119 1508 191 47 0 chr12 26810677 26810934 -116975521 - AluJo SINE Alu -43 269 1 285 325 155 12 chr12 26810943 26811278 -116975177 + L2 LINE L2 2109 2491 -823 289 262 16 66 chr12 26811985 26812107 -116974348 + L2 LINE L2 3150 3265 -7 1901 161 0 19 chr12 26812443 26812759 -116973696 - AluJb SINE Alu -2 310 1 308 200 0 17 chr12 26813603 26813663 -116972792 + MER112 DNA MER1_type 6 64 -196 2317 118 0 3 chr12 26814203 26814516 -116971939 + AluSx SINE Alu 1 312 0 380 211 0 13 chr12 26814720 26814796 -116971659 - MER112 DNA MER1_type 0 260 186 1781 137 3 72 chr12 26815163 26815534 -116970921 - MER4A LTR ERV1 0 664 261 469 167 89 0 chr12 26815534 26815624 -116970831 - MER4A LTR ERV1 -566 98 1 209 137 39 0 chr12 26815628 26815679 -116970776 + CT-rich Low_complexity Low_complexity 5 57 0 1975 106 4 4 chr12 26815686 26815960 -116970495 - AluSx SINE Alu -38 274 1 344 183 0 17 chr12 26815974 26816034 -116970421 - MER112 DNA MER1_type -196 64 6 279 340 27 7 chr12 26816046 26816193 -116970262 - L2 LINE L2 -729 2585 2436 187 250 135 52 chr12 26816377 26816473 -116969982 - L2 LINE L2 -183 3089 2986 1911 166 0 0 chr12 26816773 26817075 -116969380 - AluJo SINE Alu -10 302 1 2380 118 3 0 chr12 26817163 26817502 -116968953 - L1PA16 LINE L1 -13 6153 5814 537 273 84 44 chr12 26817697 26818143 -116968312 - LTR33A LTR ERVL -2 521 1 694 107 8 14 chr12 26818351 26818596 -116967859 + AluSx SINE Alu 1 295 -17 35 24 0 0 chr12 26818596 26818638 -116967817 + AT_rich Low_complexity Low_complexity 1 42 0 845 104 0 15 chr12 26818785 26818919 -116967536 + FLAM_C SINE Alu 2 133 0 417 192 18 132 chr12 26818947 26819114 -116967341 - MIR SINE MIR -13 249 102 248 230 0 27 chr12 26819404 26819478 -116966977 - MLT1K LTR MaLR -6 582 511 1746 159 0 39 chr12 26819478 26819787 -116966668 + AluJb SINE Alu 2 298 -14 504 280 102 64 chr12 26819816 26820159 -116966296 - MLT1K LTR MaLR -73 515 160 28 79 0 0 chr12 27021655 27021718 -116764737 + AT_rich Low_complexity Low_complexity 1 63 0 182 228 0 88 chr12 27021963 27022020 -116764435 + L3 LINE CR1 1515 1566 -11 290 256 58 44 chr12 27022367 27022504 -116763951 + MIR3 SINE MIR 45 183 -25 25 0 0 0 chr12 27023351 27023376 -116763079 + AT_rich Low_complexity Low_complexity 1 25 0 200 279 0 0 chr12 27024086 27024154 -116762301 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 73 0 0 chr12 27025204 27025245 -116761210 + (CGG)n Simple_repeat Simple_repeat 3 43 0 22 0 0 0 chr12 27025398 27025420 -116761035 + GC_rich Low_complexity Low_complexity 1 22 0 259 71 18 54 chr12 27025527 27025583 -116760872 + (CCG)n Simple_repeat Simple_repeat 3 56 0 201 74 0 0 chr12 27027880 27027907 -116758548 + (CA)n Simple_repeat Simple_repeat 1 27 0 232 273 23 0 chr12 27028033 27028121 -116758334 + (CGGGG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr12 27029439 27029461 -116756994 + GC_rich Low_complexity Low_complexity 1 22 0 208 358 13 7 chr12 27030445 27030596 -116755859 + T-rich Low_complexity Low_complexity 1 152 0 629 263 85 25 chr12 27030815 27031051 -116755404 - MIR SINE MIR 0 262 13 333 306 118 35 chr12 27031395 27031650 -116754805 + L3b LINE CR1 1281 1556 -27 388 255 68 57 chr12 27033575 27033767 -116752688 - MLT1J LTR MaLR -42 469 276 349 259 89 15 chr12 27034701 27034836 -116751619 - MIR SINE MIR -88 174 30 249 289 40 0 chr12 27035174 27035250 -116751205 - L2 LINE L2 -2 3270 3192 216 316 86 0 chr12 27036202 27036376 -116750079 + L2 LINE L2 2458 2646 -668 357 250 0 0 chr12 27036377 27036453 -116750002 - LTR33A LTR ERVL -2 521 446 254 306 9 28 chr12 27036663 27036771 -116749684 - MLT2E LTR ERVL -491 137 32 650 327 37 65 chr12 27036924 27037469 -116748986 + L2 LINE L2 2717 3247 -25 1881 142 51 12 chr12 27038900 27039231 -116747224 - MER2 DNA MER2_type 0 344 1 298 288 150 18 chr12 27039253 27039479 -116746976 + MIR SINE MIR 7 262 0 446 172 11 25 chr12 27039980 27040066 -116746389 + MLT2B1 LTR ERVL 1 81 -333 2142 124 0 13 chr12 27040066 27040372 -116746083 - AluSg SINE Alu -8 302 1 446 172 11 25 chr12 27040372 27040405 -116746050 + MLT2B1 LTR ERVL 81 113 -301 250 392 0 0 chr12 27040919 27041016 -116745439 + MIR SINE MIR 53 149 -59 25 65 0 0 chr12 27041340 27041386 -116745069 + AT_rich Low_complexity Low_complexity 1 46 0 1234 114 0 0 chr12 27041396 27041554 -116744901 - AluSp SINE Alu -26 287 130 2280 113 0 0 chr12 27041558 27041860 -116744595 - AluSc SINE Alu -7 302 1 286 291 81 0 chr12 27041933 27042019 -116744436 + MER5A DNA MER1_type 14 106 -83 1634 159 132 12 chr12 27042222 27042548 -116743907 - MLT1A1 LTR MaLR 0 365 1 225 255 0 0 chr12 27043085 27043132 -116743323 + (TG)n Simple_repeat Simple_repeat 1 47 0 37 23 0 0 chr12 27043313 27043357 -116743098 + AT_rich Low_complexity Low_complexity 1 44 0 404 308 35 24 chr12 27043556 27043725 -116742730 + MIR3 SINE MIR 36 206 -2 1954 106 77 0 chr12 27044127 27044401 -116742054 + AluSc SINE Alu 1 295 -14 1675 192 128 15 chr12 27044461 27044968 -116741487 + MLT1E1 LTR MaLR 1 650 -4 237 269 0 76 chr12 27044982 27045101 -116741354 - HAL1b LINE L1 -474 874 765 2205 104 0 7 chr12 27045101 27045398 -116741057 + AluSx SINE Alu 1 295 -17 674 236 35 31 chr12 27045421 27045650 -116740805 + MIR SINE MIR 6 235 -27 490 289 62 36 chr12 27046258 27046483 -116739972 + MIR SINE MIR 20 250 -12 199 244 0 0 chr12 27047160 27047201 -116739254 - L2 LINE L2 -16 3256 3216 815 159 19 13 chr12 27047256 27047413 -116739042 - MER34C LTR ERV1 -2 583 426 585 165 132 8 chr12 27047439 27047560 -116738895 - MER34C LTR ERV1 -449 136 1 2365 214 84 5 chr12 27047663 27048294 -116738161 + L1 LINE L1 2415 3095 -3051 244 197 0 0 chr12 27048313 27048379 -116738076 + L1 LINE L1 3217 3282 -2864 26635 141 13 16 chr12 27048380 27049171 -116737284 + L1PA8A LINE L1 5 797 -5649 1852 165 176 29 chr12 27049171 27049613 -116736842 + LTR22 LTR ERVK 1 507 -2 26635 141 13 16 chr12 27049613 27050045 -116736410 + L1PA8A LINE L1 797 1229 -5217 216 97 0 0 chr12 27050045 27050076 -116736379 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26635 141 13 16 chr12 27050076 27052320 -116734135 + L1PA8A LINE L1 1229 3479 -2967 2218 105 3 3 chr12 27052320 27052616 -116733839 - AluY SINE Alu -15 296 1 26635 141 13 16 chr12 27052616 27055090 -116731365 + L1PA8A LINE L1 3479 5991 -455 271 270 48 40 chr12 27055724 27055850 -116730605 - MIR SINE MIR -65 197 71 407 239 68 21 chr12 27055973 27056114 -116730341 - MIR SINE MIR -26 182 33 1575 202 30 33 chr12 27056495 27056861 -116729594 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr12 27057562 27057583 -116728872 + AT_rich Low_complexity Low_complexity 1 21 0 651 267 48 0 chr12 27058565 27058771 -116727684 + L2 LINE L2 2832 3047 -266 617 189 11 179 chr12 27058855 27059141 -116727314 - MLT1D LTR MaLR -45 460 237 2428 87 0 0 chr12 27059409 27059707 -116726748 - AluSx SINE Alu -14 298 1 867 156 6 78 chr12 27059712 27059892 -116726563 - L1MD3 LINE L1 -419 7576 7410 318 185 0 0 chr12 27059894 27059948 -116726507 - MLT1D LTR MaLR -442 125 72 929 169 18 102 chr12 27059966 27060298 -116726157 - L1MC4 LINE L1 -7 8035 7732 593 305 37 71 chr12 27060301 27060655 -116725800 + L1MEc LINE L1 37 378 -6018 353 283 0 0 chr12 27060666 27060758 -116725697 - L1MC4a LINE L1 -1214 6594 6503 483 257 77 6 chr12 27061009 27061192 -116725263 - HAL1b LINE L1 -585 763 568 492 289 6 31 chr12 27061194 27061353 -116725102 + MER5B DNA MER1_type 4 158 -20 560 191 0 9 chr12 27061619 27061729 -116724726 - MER5A DNA MER1_type -80 109 1 264 263 41 88 chr12 27061730 27061901 -116724554 - HAL1b LINE L1 -879 469 307 317 299 0 23 chr12 27063282 27063369 -116723086 - L2 LINE L2 -4 3268 3184 898 274 29 29 chr12 27064037 27064314 -116722141 + MER102a DNA MER1_type 32 308 -22 284 232 0 0 chr12 27064838 27064907 -116721548 - L2 LINE L2 -217 3055 2987 2155 100 3 32 chr12 27065146 27065457 -116720998 + AluSg SINE Alu 1 302 -8 371 324 146 20 chr12 27066103 27066742 -116719713 - L2 LINE L2 -571 2743 2025 755 289 43 4 chr12 27067195 27067427 -116719028 - MIR SINE MIR -1 261 21 3353 100 40 2 chr12 27067649 27068100 -116718355 + MER1A DNA MER1_type 62 529 0 253 263 192 0 chr12 27068563 27068662 -116717793 + L2 LINE L2 3196 3313 0 1676 141 12 0 chr12 27070481 27070736 -116715719 + AluSx SINE Alu 44 301 -11 2136 119 10 0 chr12 27071165 27071467 -116714988 - AluSx SINE Alu -7 305 1 21 82 0 0 chr12 27071860 27071909 -116714546 + AT_rich Low_complexity Low_complexity 1 49 0 344 314 113 10 chr12 27073363 27073567 -116712888 + MIR SINE MIR 37 261 -1 28 0 0 0 chr12 27073749 27073777 -116712678 + AT_rich Low_complexity Low_complexity 1 28 0 519 198 78 17 chr12 27075422 27075538 -116710917 - L2 LINE L2 0 3313 3191 1078 224 43 14 chr12 27075871 27076152 -116710303 + MER63 DNA MER1_type 514 802 -258 874 169 17 34 chr12 27076313 27076491 -116709964 + MER63 DNA MER1_type 866 1040 -22 1217 302 65 9 chr12 27076491 27077108 -116709347 + L2 LINE L2 2438 3089 -224 628 223 40 14 chr12 27077145 27077293 -116709162 + MIR SINE MIR 90 241 -21 218 185 0 37 chr12 27077313 27077367 -116709088 + (TTA)n Simple_repeat Simple_repeat 2 53 0 700 253 33 0 chr12 27077373 27077555 -116708900 + L2 LINE L2 3123 3310 -3 276 294 65 0 chr12 27078262 27078354 -116708101 + L2 LINE L2 3142 3239 -33 324 213 128 121 chr12 27078515 27078656 -116707799 + MIR SINE MIR 20 161 -101 192 361 33 16 chr12 27079726 27079848 -116706607 - MIR SINE MIR -6 256 133 332 306 122 7 chr12 27080145 27080292 -116706163 - MIR SINE MIR -59 203 40 228 263 164 40 chr12 27080808 27080960 -116705495 - MIR SINE MIR -86 176 6 361 154 45 18 chr12 27082210 27082320 -116704135 + CT-rich Low_complexity Low_complexity 4 116 0 215 323 23 53 chr12 27083633 27083766 -116702689 + L3 LINE CR1 1247 1375 -202 227 294 44 0 chr12 27083828 27083896 -116702559 + L2 LINE L2 3202 3272 0 1039 249 88 53 chr12 27084674 27084819 -116701636 + L2 LINE L2 2553 2692 -621 2310 118 0 0 chr12 27084819 27085123 -116701332 + AluSx SINE Alu 1 304 -8 1039 249 88 53 chr12 27085123 27085656 -116700799 + L2 LINE L2 2692 3253 -60 2350 125 6 15 chr12 27085656 27085992 -116700463 - MER1B DNA MER1_type 0 337 5 1039 249 88 53 chr12 27085992 27086049 -116700406 + L2 LINE L2 3253 3307 -6 196 309 122 32 chr12 27086437 27086560 -116699895 - L3b LINE CR1 -229 1354 1221 375 23 0 0 chr12 27087027 27087071 -116699384 + (TG)n Simple_repeat Simple_repeat 2 45 0 1475 171 106 86 chr12 27087393 27087779 -116698676 - MSTD LTR MaLR 0 396 3 200 324 68 0 chr12 27087884 27087958 -116698497 - L2 LINE L2 -47 3225 3147 347 265 49 56 chr12 27088181 27088343 -116698112 + MER5A DNA MER1_type 1 161 -28 541 215 39 54 chr12 27089400 27089605 -116696850 + L1M4 LINE L1 4191 4392 -1754 287 158 287 40 chr12 27089993 27090094 -116696361 - MIR SINE MIR -132 130 5 24 100 0 0 chr12 27091442 27091522 -116694933 + GC_rich Low_complexity Low_complexity 1 80 0 335 225 153 27 chr12 27092716 27092827 -116693628 - L2 LINE L2 -3 3310 3186 704 275 74 85 chr12 27092977 27093495 -116692960 + L2 LINE L2 2841 3312 -1 184 100 100 0 chr12 27093594 27093624 -116692831 - L2 LINE L2 -21 3251 3219 180 0 0 0 chr12 27095890 27095910 -116690545 + (A)n Simple_repeat Simple_repeat 1 20 0 316 318 196 19 chr12 27096186 27096702 -116689753 + L2 LINE L2 2142 2748 -566 269 306 111 28 chr12 27096826 27096934 -116689521 + L2 LINE L2 2932 3048 -224 2273 104 3 3 chr12 27098860 27099157 -116687298 - AluSq SINE Alu -16 297 1 1410 187 154 26 chr12 27099175 27099480 -116686975 + MER2 DNA MER2_type 1 344 0 1017 164 25 35 chr12 27099647 27099848 -116686607 + MER3 DNA MER1_type 5 203 -6 21 0 0 0 chr12 27099893 27099914 -116686541 + AT_rich Low_complexity Low_complexity 1 21 0 2794 223 61 35 chr12 27100203 27101023 -116685432 + MER63C DNA MER1_type 1 841 -89 996 269 29 95 chr12 27101117 27101664 -116684791 + L2 LINE L2 2107 2617 -697 2171 143 121 5 chr12 27101676 27102055 -116684400 + MSTA LTR MaLR 6 428 0 310 318 118 9 chr12 27102267 27102487 -116683968 - L2 LINE L2 -113 3200 2957 4599 172 53 42 chr12 27103146 27103386 -116683069 + L1MA9 LINE L1 5081 5317 -995 2113 116 0 23 chr12 27103386 27103688 -116682767 + AluY SINE Alu 1 295 -16 4599 172 53 42 chr12 27103688 27104526 -116681929 + L1MA9 LINE L1 5317 6172 -140 342 0 0 0 chr12 27104526 27104564 -116681891 + (CA)n Simple_repeat Simple_repeat 1 38 0 4599 172 53 42 chr12 27104564 27104677 -116681778 + L1MA9 LINE L1 6172 6282 -30 1780 174 64 25 chr12 27105041 27105402 -116681053 - THE1C LTR MaLR 0 375 1 10419 124 19 35 chr12 27105402 27107006 -116679449 - THE1C-int LTR MaLR 0 1580 4 6722 76 4 29 chr12 27107048 27108293 -116678162 + L1PA5 LINE L1 4912 6135 -19 254 273 10 30 chr12 27108417 27108516 -116677939 + MER4A LTR ERV1 1 97 -567 284 311 38 56 chr12 27109311 27109603 -116676852 - L1ME4a LINE L1 -206 5915 5628 1482 210 69 3 chr12 27109603 27109922 -116676533 - MER58B DNA MER1_type 0 341 2 284 311 38 56 chr12 27109922 27109970 -116676485 - L1ME4a LINE L1 -493 5628 5581 2205 47 4 0 chr12 27110149 27110402 -116676053 - L1PA7 LINE L1 0 6154 5901 201 253 200 20 chr12 27110521 27110671 -116675784 - L3b LINE CR1 -194 1389 1213 792 195 0 0 chr12 27113375 27113498 -116672957 + FLAM_C SINE Alu 3 125 -18 2090 120 7 10 chr12 27113721 27114020 -116672435 + AluSx SINE Alu 1 298 -14 524 15 0 15 chr12 27114131 27114197 -116672258 + (GGGAA)n Simple_repeat Simple_repeat 5 69 0 249 284 27 0 chr12 27115072 27115146 -116671309 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 27115249 27115274 -116671181 + (T)n Simple_repeat Simple_repeat 1 25 0 293 260 110 50 chr12 27115576 27115676 -116670779 - L2 LINE L2 0 3272 3167 2059 124 3 13 chr12 27115720 27116035 -116670420 + AluSx SINE Alu 1 312 0 626 228 146 0 chr12 27116572 27116743 -116669712 + L1MEc LINE L1 1619 1814 -4582 1669 222 120 24 chr12 27116901 27116938 -116669517 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 27116938 27117022 -116669433 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1669 222 120 24 chr12 27117022 27117452 -116669003 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 27117675 27117721 -116668734 + (TTA)n Simple_repeat Simple_repeat 2 47 0 269 300 12 0 chr12 27119244 27119324 -116667131 + MER20B DNA MER1_type 3 83 -700 5647 129 50 18 chr12 27119365 27120324 -116666131 + L1MA7 LINE L1 5296 6285 -6 275 301 49 32 chr12 27120354 27120477 -116665978 + MER20B DNA MER1_type 115 239 -544 828 198 45 0 chr12 27120483 27120640 -116665815 - AluJb SINE Alu -4 308 145 685 298 18 0 chr12 27120652 27120870 -116665585 + MER20B DNA MER1_type 295 516 -267 705 170 104 130 chr12 27120963 27121030 -116665425 + MER20B DNA MER1_type 518 585 -198 208 70 47 0 chr12 27121030 27121073 -116665382 + (TA)n Simple_repeat Simple_repeat 1 45 0 705 170 104 130 chr12 27121073 27121275 -116665180 + MER20B DNA MER1_type 585 780 -3 2299 136 15 0 chr12 27122198 27122530 -116663925 + MER4B-int LTR ERV1 6422 6758 0 3801 130 6 38 chr12 27122530 27123160 -116663295 + MER4B LTR ERV1 1 610 0 608 254 0 3 chr12 27123162 27123298 -116663157 + MLT1A1 LTR MaLR 243 365 0 391 290 57 16 chr12 27123372 27123496 -116662959 - L2 LINE L2 -2 3270 3142 1754 239 85 1 chr12 27124498 27125033 -116661422 + MER45B DNA AcHobo 2 611 -429 2296 38 21 17 chr12 27125233 27125523 -116660932 + AluY SINE Alu 1 291 -20 1973 185 7 3 chr12 27125636 27125944 -116660511 + AluSx SINE Alu 1 309 -3 498 130 11 33 chr12 27125945 27126037 -116660418 - MER4A LTR ERV1 -574 90 1 36 23 0 0 chr12 27126109 27126152 -116660303 + AT_rich Low_complexity Low_complexity 1 43 0 266 79 24 173 chr12 27126152 27126279 -116660176 - L1PA6 LINE L1 -6 6148 6041 360 236 42 52 chr12 27126492 27126704 -116659751 - L1PA6 LINE L1 -250 5904 5695 225 154 0 0 chr12 27128968 27129007 -116657448 + T-rich Low_complexity Low_complexity 2 40 0 6263 52 25 0 chr12 27129007 27129781 -116656674 - L1PA7 LINE L1 0 6154 5362 1663 72 18 0 chr12 27129777 27129998 -116656457 + L1PA7 LINE L1 5129 5353 -793 * 479 230 144 16 chr12 27130036 27130223 -116656232 + MIR SINE MIR 46 256 -6 22 35 0 0 chr12 27130986 27131015 -116655440 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr12 27133142 27133167 -116653288 + (TC)n Simple_repeat Simple_repeat 2 26 0 371 278 185 56 chr12 27135700 27135899 -116650556 + MIR SINE MIR 6 236 -26 234 91 0 0 chr12 27135899 27135932 -116650523 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 371 278 185 56 chr12 27135932 27135948 -116650507 + MIR SINE MIR 236 249 -13 189 0 0 0 chr12 27137245 27137266 -116649189 + (T)n Simple_repeat Simple_repeat 1 21 0 841 175 0 0 chr12 27141207 27141333 -116645122 - FLAM_C SINE Alu -7 126 1 189 0 0 0 chr12 27141522 27141543 -116644912 + (TG)n Simple_repeat Simple_repeat 2 22 0 1834 117 91 11 chr12 27141805 27142079 -116644376 - AluSx SINE Alu -11 301 6 665 263 11 34 chr12 27142352 27142527 -116643928 + MIR SINE MIR 63 233 -29 189 0 0 0 chr12 27144429 27144450 -116642005 + (T)n Simple_repeat Simple_repeat 1 21 0 241 408 58 25 chr12 27146094 27146214 -116640241 - L2 LINE L2 -5 3267 3144 324 226 11 158 chr12 27146369 27146546 -116639909 - MIR SINE MIR -1 261 111 2314 92 3 0 chr12 27146689 27146982 -116639473 + AluSq SINE Alu 4 297 -16 269 306 111 28 chr12 27148904 27149012 -116637443 - L2 LINE L2 -224 3048 2932 316 318 196 19 chr12 27149136 27149652 -116636803 - L2 LINE L2 -566 2748 2142 180 0 0 0 chr12 27149928 27149948 -116636507 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 27152338 27152361 -116634094 + AT_rich Low_complexity Low_complexity 1 23 0 333 289 97 9 chr12 27152518 27152632 -116633823 - MIR3 SINE MIR -2 206 83 806 265 11 52 chr12 27153150 27153422 -116633033 + MIR SINE MIR 1 261 -1 624 287 152 30 chr12 27155514 27156023 -116630432 - L2 LINE L2 -31 3282 2703 405 123 0 0 chr12 27156687 27156752 -116629703 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1427 230 89 67 chr12 27157419 27157476 -116628979 + MLT1D LTR MaLR 3 57 -448 3678 142 6 9 chr12 27157476 27158005 -116628450 - MER1A DNA MER1_type 0 527 1 1427 230 89 67 chr12 27158005 27158439 -116628016 + MLT1D LTR MaLR 57 505 0 1917 163 3 3 chr12 27158716 27159022 -116627433 - AluJo SINE Alu -2 310 5 291 211 97 79 chr12 27159163 27159277 -116627178 - HAL1 LINE L1 -148 2359 2244 557 279 12 17 chr12 27159279 27159451 -116627004 - MER5B DNA MER1_type -4 174 4 2384 88 0 7 chr12 27159601 27159898 -116626557 + AluSc SINE Alu 1 295 -14 1665 192 128 15 chr12 27159958 27160465 -116625990 + MLT1E1 LTR MaLR 1 650 -4 248 269 0 76 chr12 27160479 27160598 -116625857 - HAL1b LINE L1 -474 874 765 2189 104 0 7 chr12 27160598 27160895 -116625560 + AluSx SINE Alu 1 295 -17 744 236 35 31 chr12 27160918 27161147 -116625308 + MIR SINE MIR 6 235 -27 554 308 56 32 chr12 27161741 27161991 -116624464 + MIR SINE MIR 6 261 -1 213 244 0 0 chr12 27162657 27162698 -116623757 - L2 LINE L2 -16 3256 3216 830 159 19 13 chr12 27162753 27162910 -116623545 - MER34C LTR ERV1 -2 583 426 588 165 132 8 chr12 27162936 27163057 -116623398 - MER34C LTR ERV1 -449 136 1 2431 214 84 5 chr12 27163160 27163791 -116622664 + L1M4 LINE L1 2415 3095 -3051 248 197 0 0 chr12 27163810 27163876 -116622579 + L1M4 LINE L1 3217 3282 -2864 26789 140 12 14 chr12 27163877 27164668 -116621787 + L1PA8 LINE L1 5 797 -5690 1993 158 176 29 chr12 27164668 27165110 -116621345 + LTR22 LTR ERVK 1 507 -2 26789 140 12 14 chr12 27165110 27165542 -116620913 + L1PA8 LINE L1 797 1229 -5258 216 97 0 0 chr12 27165542 27165573 -116620882 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26789 140 12 14 chr12 27165573 27167817 -116618638 + L1PA8 LINE L1 1229 3477 -3010 2200 105 3 3 chr12 27167817 27168113 -116618342 - AluY SINE Alu -15 296 1 26789 140 12 14 chr12 27168113 27171078 -116615377 + L1PA8 LINE L1 3477 6484 -3 3787 80 8 18 chr12 27171648 27172150 -116614305 + L1PA8A LINE L1 5634 6130 -1 2119 248 40 26 chr12 27172174 27172827 -116613628 + L1M4 LINE L1 3322 3983 -2163 * 6571 79 19 2 chr12 27172813 27173704 -116612751 + L1PA10 LINE L1 5263 6168 0 268 246 8 51 chr12 27173735 27173853 -116612602 + L1MB8 LINE L1 6066 6178 0 3042 242 108 87 chr12 27174484 27176453 -116610002 - L2 LINE L2 0 3313 1299 2218 98 0 32 chr12 27177124 27177485 -116608970 - AluSx SINE Alu 0 312 1 264 310 87 22 chr12 27177579 27177763 -116608692 + MIR SINE MIR 46 241 -21 195 42 0 0 chr12 27177899 27177923 -116608532 + (TA)n Simple_repeat Simple_repeat 1 24 0 2890 216 58 33 chr12 27177934 27178669 -116607786 - MER21B LTR ERV1 -7 856 103 276 53 0 0 chr12 27179914 27179952 -116606503 + (CA)n Simple_repeat Simple_repeat 2 39 0 1301 222 18 13 chr12 27180053 27180361 -116606094 + MER33 DNA MER1_type 1 302 -22 392 290 73 12 chr12 27180663 27180846 -116605609 + MIR3 SINE MIR 5 200 -8 274 310 11 0 chr12 27181085 27181172 -116605283 + GA-rich Low_complexity Low_complexity 3 90 0 1734 160 34 115 chr12 27182824 27183242 -116603213 - MLT1B LTR MaLR -3 387 4 2192 103 10 7 chr12 27184803 27185105 -116601350 + AluSg SINE Alu 1 303 -7 433 259 0 0 chr12 27185236 27185348 -116601107 + L2 LINE L2 3197 3308 -5 614 248 52 19 chr12 27187460 27187647 -116598808 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 27188360 27188402 -116598053 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 27188427 27188527 -116597928 - MIR SINE MIR -20 242 140 1658 160 20 24 chr12 27188528 27188844 -116597611 - AluJo SINE Alu 0 312 1 1818 114 21 17 chr12 27190560 27190850 -116595605 + AluSq SINE Alu 7 297 -16 553 244 14 0 chr12 27192629 27192775 -116593680 + Charlie3 DNA MER1_type 4 113 -2597 1363 19 0 0 chr12 27193083 27193239 -116593216 + L1PA2 LINE L1 6000 6155 0 391 278 83 0 chr12 27193239 27193347 -116593108 + MER5A DNA MER1_type 62 178 -11 23 0 0 0 chr12 27194421 27194444 -116592011 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 7 7 chr12 27195013 27195315 -116591140 - AluSg SINE Alu -8 302 1 34 24 0 0 chr12 27196182 27196223 -116590232 + GC_rich Low_complexity Low_complexity 1 41 0 614 248 52 19 chr12 27196755 27196942 -116589513 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 27197655 27197697 -116588758 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 27197722 27197822 -116588633 - MIR SINE MIR -20 242 140 1692 141 31 34 chr12 27197823 27198137 -116588318 - AluJo SINE Alu 0 312 3 537 282 47 66 chr12 27199238 27199407 -116587048 - L2 LINE L2 0 3313 3151 1828 174 38 0 chr12 27199407 27199700 -116586755 + AluJo SINE Alu 1 304 -8 537 282 47 66 chr12 27199700 27199849 -116586606 - L2 LINE L2 -162 3151 3001 571 329 68 4 chr12 27200002 27200251 -116586204 - L2 LINE L2 -575 2739 2475 559 305 140 25 chr12 27200408 27200772 -116585683 - MER115 DNA AcHobo -287 406 1 3132 163 21 16 chr12 27200884 27201453 -116585002 + L1PB4 LINE L1 5584 6155 -1 314 291 152 7 chr12 27203835 27203986 -116582469 + MER5A DNA MER1_type 9 181 -8 301 161 18 0 chr12 27204257 27204313 -116582142 + MER117 DNA MER1_type 60 116 -81 1858 200 62 62 chr12 27204377 27204891 -116581564 + MLT2B3 LTR ERVL 1 514 -40 206 207 17 0 chr12 27204958 27205016 -116581439 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 334 140 0 0 chr12 27205016 27205066 -116581389 + MLT2B3 LTR ERVL 464 513 -7 760 177 0 15 chr12 27205412 27205542 -116580913 - FLAM_A SINE Alu -5 128 1 203 358 33 8 chr12 27205720 27205840 -116580615 + MIR SINE MIR 5 127 -135 189 196 0 22 chr12 27206088 27206134 -116580321 + L3 LINE CR1 1528 1572 -5 1710 193 50 14 chr12 27206464 27206822 -116579633 + MLT1B LTR MaLR 20 390 0 207 171 0 0 chr12 27209006 27209041 -116577414 + (CAGGC)n Simple_repeat Simple_repeat 2 36 0 218 353 128 5 chr12 27210230 27210417 -116576038 - MIR SINE MIR -6 256 47 806 295 69 49 chr12 27211961 27212724 -116573731 - L2 LINE L2 0 3313 2531 596 263 37 95 chr12 27212709 27213036 -116573419 + L2 LINE L2 2957 3264 -49 * 2297 100 7 0 chr12 27213048 27213347 -116573108 + AluSq SINE Alu 1 301 -12 268 277 43 21 chr12 27213362 27213456 -116572999 - L2 LINE L2 -783 2531 2436 593 251 57 11 chr12 27213457 27213632 -116572823 + HERV16 LTR ERVL 1754 1936 -3060 1369 339 32 11 chr12 27213640 27214266 -116572189 + HERV16 LTR ERVL 3016 3654 -2000 1378 332 46 18 chr12 27214300 27215034 -116571421 + HERV16 LTR ERVL 3758 4534 -1230 936 136 26 0 chr12 27215036 27215191 -116571264 + MER5A DNA MER1_type 1 159 -30 1883 92 18 25 chr12 27215201 27215483 -116570972 - L1MA2 LINE L1 -9 6295 6016 624 251 0 54 chr12 27215750 27215917 -116570538 - MER105 DNA DNA -40 164 7 371 378 0 0 chr12 27215926 27216082 -116570373 + HERV16 LTR ERVL 4729 4884 -880 5362 144 21 11 chr12 27216087 27216941 -116569514 - Tigger1 DNA MER2_type -1554 864 2 374 290 86 67 chr12 27217066 27217420 -116569035 - L1MC/D LINE L1 -413 5708 5397 2483 86 0 0 chr12 27217420 27217722 -116568733 - AluSc SINE Alu -7 302 1 374 290 86 67 chr12 27217722 27217856 -116568599 - L1MC/D LINE L1 -724 5397 5267 385 75 19 0 chr12 27217925 27217978 -116568477 + MSTB1 LTR MaLR 1 54 -378 329 220 289 38 chr12 27218330 27218489 -116567966 - MLT1L LTR MaLR -55 560 362 216 271 57 29 chr12 27219382 27219452 -116567003 - L2 LINE L2 0 3272 3201 257 270 54 0 chr12 27220980 27221054 -116565401 - L1MC4 LINE L1 -1337 6705 6628 342 337 128 0 chr12 27221098 27221285 -116565170 + LTR16A LTR ERVL 16 226 -224 232 162 0 0 chr12 27221416 27221453 -116565002 + LTR16A1 LTR ERVL 419 455 -2 1025 291 66 28 chr12 27221494 27221951 -116564504 + HERV16 LTR ERVL 74 547 -4449 213 94 0 0 chr12 27222006 27222038 -116564417 + (T)n Simple_repeat Simple_repeat 1 32 0 241 28 0 0 chr12 27222152 27222188 -116564267 - L1PA3 LINE L1 -1 6154 6119 2431 84 0 0 chr12 27222408 27222704 -116563751 - AluY SINE Alu -15 296 1 238 88 18 123 chr12 27223860 27223917 -116562538 - MER39 LTR ERV1 -143 564 514 286 311 118 52 chr12 27224622 27224834 -116561621 - MIR SINE MIR -6 256 31 2363 205 80 42 chr12 27225486 27226410 -116560045 + L1ME2 LINE L1 5127 6074 -90 729 79 0 0 chr12 27226410 27226511 -116559944 + (TG)n Simple_repeat Simple_repeat 2 102 0 11514 172 53 14 chr12 27226547 27227094 -116559361 + L1MB1 LINE L1 2874 3398 -2770 2394 167 15 20 chr12 27227094 27227490 -116558965 - MSTD LTR MaLR -2 394 1 11514 172 53 14 chr12 27227490 27229430 -116557025 + L1MB1 LINE L1 3398 5505 -663 207 0 0 0 chr12 27229430 27229453 -116557002 + (CA)n Simple_repeat Simple_repeat 2 24 0 11514 172 53 14 chr12 27229453 27230000 -116556455 + L1MB1 LINE L1 5505 6029 -139 2033 120 3 17 chr12 27230002 27230301 -116556154 - AluSx SINE Alu -5 307 13 1926 161 30 134 chr12 27230941 27231151 -116555304 + MSTB2 LTR MaLR 1 129 -328 2189 115 3 10 chr12 27231151 27231456 -116554999 - AluSp SINE Alu -8 305 3 1926 161 30 134 chr12 27231456 27231753 -116554702 + MSTB2 LTR MaLR 129 455 -2 211 246 18 18 chr12 27231758 27231815 -116554640 - MIR SINE MIR -180 82 26 * 230 362 135 29 chr12 27231813 27231947 -116554508 - L2 LINE L2 -2420 894 776 1023 148 28 0 chr12 27231947 27232123 -116554332 + L1MB3 LINE L1 6003 6183 0 230 362 135 29 chr12 27232123 27232447 -116554008 - L2 LINE L2 -2538 776 380 1407 202 145 26 chr12 27232447 27232799 -116553656 + MSTD LTR MaLR 3 396 0 230 362 135 29 chr12 27232799 27232822 -116553633 - L2 LINE L2 -2934 380 361 359 322 81 27 chr12 27233230 27233379 -116553076 - L2 LINE L2 0 3272 3116 1797 169 80 0 chr12 27233834 27234148 -116552307 - MER44D DNA MER2_type 0 609 1 2187 101 7 7 chr12 27234890 27235187 -116551268 + AluSq SINE Alu 1 297 -16 576 267 26 26 chr12 27235261 27235452 -116551003 + MIR3 SINE MIR 16 206 -2 544 281 90 24 chr12 27235947 27236177 -116550278 - MIR SINE MIR -19 243 4 965 200 6 0 chr12 27237256 27237421 -116549034 + AluJo SINE Alu 1 166 -146 428 256 0 0 chr12 27237421 27237499 -116548956 + AluSc SINE Alu 85 162 -147 1154 206 0 0 chr12 27237499 27237717 -116548738 + AluJo SINE Alu 85 302 -10 953 182 0 6 chr12 27240051 27240210 -116546245 + AluJb SINE Alu 131 288 -24 250 285 170 63 chr12 27240702 27241085 -116545370 + LTR67 LTR ERVL 122 545 -12 702 265 78 0 chr12 27241391 27241557 -116544898 - MER63A DNA MER1_type -31 179 1 197 273 45 30 chr12 27241611 27241677 -116544778 - MIR SINE MIR -102 106 40 2356 87 7 0 chr12 27242541 27242840 -116543615 + AluSx SINE Alu 1 301 -11 2124 113 30 13 chr12 27243210 27243512 -116542943 - AluSp SINE Alu -5 308 2 952 180 73 22 chr12 27243518 27243696 -116542759 + MER5A DNA MER1_type 3 189 0 28312 128 20 69 chr12 27244795 27250064 -116536391 - L1P LINE L1 -1136 5010 1 1743 178 14 0 chr12 27250099 27250392 -116536063 + AluJb SINE Alu 1 297 -15 187 327 115 9 chr12 27251997 27252110 -116534345 + MIR SINE MIR 22 146 -116 892 291 105 25 chr12 27252285 27252811 -116533644 + L1ME4a LINE L1 5538 6105 -16 1100 273 58 81 chr12 27253816 27254149 -116532306 - L2 LINE L2 -15 3298 2976 2193 121 0 31 chr12 27254149 27254471 -116531984 + AluSx SINE Alu 1 312 0 1100 273 58 81 chr12 27254471 27254570 -116531885 - L2 LINE L2 -337 2976 2876 365 275 231 0 chr12 27254590 27254750 -116531705 - L2 LINE L2 -568 2746 2550 1462 231 20 3 chr12 27254768 27255066 -116531389 + MER82 DNA MER2_type 348 650 -3 763 281 148 75 chr12 27255079 27255565 -116530890 - L2 LINE L2 -980 2334 1885 2090 117 3 13 chr12 27255565 27255864 -116530591 + AluSx SINE Alu 1 296 -16 763 281 148 75 chr12 27255864 27255905 -116530550 - L2 LINE L2 -1429 1885 1848 2558 101 3 3 chr12 27255905 27256251 -116530204 - L1MA1 LINE L1 -4 6298 5953 763 281 148 75 chr12 27256251 27256391 -116530064 - L2 LINE L2 -1466 1848 1617 646 316 21 0 chr12 27256428 27256621 -116529834 - MIR SINE MIR -62 200 4 224 314 144 25 chr12 27257619 27257737 -116528718 - L2 LINE L2 0 3272 3141 380 224 88 41 chr12 27257780 27257927 -116528528 + MIR SINE MIR 64 217 -45 2975 87 30 2 chr12 27258464 27258857 -116527598 + MLT2A1 LTR ERVL 1 404 -40 265 68 68 136 chr12 27258892 27258951 -116527504 + MLT2A1 LTR ERVL 399 453 0 302 290 90 32 chr12 27259315 27259470 -116526985 + L2 LINE L2 3145 3308 -5 1641 206 45 22 chr12 27259603 27259958 -116526497 - MLT1A1 LTR MaLR -1 364 2 769 274 93 0 chr12 27260026 27260252 -116526203 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 27260652 27260673 -116525782 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 4 0 chr12 27261834 27262106 -116524349 + AluSg SINE Alu 21 293 -17 396 0 0 0 chr12 27262110 27262154 -116524301 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 373 333 133 41 chr12 27262512 27262857 -116523598 + L2 LINE L2 1992 2368 -946 984 314 125 10 chr12 27263047 27263567 -116522888 - L3 LINE CR1 -672 905 326 334 277 110 27 chr12 27263750 27263976 -116522479 - L1ME4a LINE L1 -188 5933 5676 2008 185 0 36 chr12 27263976 27264333 -116522122 - MER2 DNA MER2_type 0 344 1 334 277 110 27 chr12 27264333 27264398 -116522057 - L1ME4a LINE L1 -445 5676 5618 1384 126 17 26 chr12 27264410 27264640 -116521815 + MER50 LTR ERV1 7 234 -500 * 1427 149 80 80 chr12 27264628 27264930 -116521525 + MER50 LTR ERV1 433 734 0 341 227 87 93 chr12 27265027 27265177 -116521278 - MLT1J2 LTR MaLR -30 420 272 1525 283 65 44 chr12 27265401 27266013 -116520442 + MLT2F LTR ERVL 37 661 -2 7623 41 7 0 chr12 27266066 27267354 -116519101 - L1PA5 LINE L1 -8 6146 4846 21 0 0 0 chr12 27269822 27269843 -116516612 + AT_rich Low_complexity Low_complexity 1 21 0 407 217 91 74 chr12 27274384 27274584 -116511871 - MIR SINE MIR -54 208 8 293 295 38 9 chr12 27275100 27275205 -116511250 + MER5A DNA MER1_type 11 118 -71 182 227 120 27 chr12 27275566 27275641 -116510814 - MIR SINE MIR -37 225 144 551 130 9 65 chr12 27275690 27275798 -116510657 + MSTB1 LTR MaLR 1 102 -330 22 0 0 0 chr12 27275798 27275820 -116510635 + GC_rich Low_complexity Low_complexity 1 22 0 684 194 6 44 chr12 27277069 27277229 -116509226 - MIR SINE MIR -30 232 79 463 287 163 27 chr12 27277795 27278344 -116508111 + L2 LINE L2 2680 3313 0 180 357 70 28 chr12 27278350 27278493 -116507962 - L2 LINE L2 -172 3100 2952 232 333 89 7 chr12 27278580 27278715 -116507740 - MIR SINE MIR -113 149 4 256 358 169 0 chr12 27278968 27279169 -116507286 - L2 LINE L2 -5 3267 3033 188 350 52 21 chr12 27279261 27279343 -116507112 - L2 LINE L2 -463 2851 2764 1733 169 44 0 chr12 27279343 27279638 -116506817 + AluSx SINE Alu 1 308 -4 188 350 52 21 chr12 27279638 27279652 -116506803 - L2 LINE L2 -550 2764 2752 194 33 67 0 chr12 27279652 27279682 -116506773 + GA-rich Low_complexity Low_complexity 4 35 0 192 357 66 29 chr12 27279691 27279935 -116506520 - L2 LINE L2 -541 2773 2521 1430 147 57 8 chr12 27280279 27280524 -116505931 - AluJb SINE Alu -24 288 32 305 301 0 0 chr12 27280530 27280613 -116505842 + L2 LINE L2 3225 3307 -6 296 260 164 34 chr12 27281622 27281768 -116504687 + MIR SINE MIR 88 252 -10 183 354 69 31 chr12 27281926 27282056 -116504399 - L2 LINE L2 -1 3271 3137 596 133 0 0 chr12 27282638 27282721 -116503734 + 5S rRNA rRNA 1 83 -38 376 218 79 0 chr12 27283856 27283957 -116502498 + MIR SINE MIR 89 197 -65 224 326 53 23 chr12 27284048 27284180 -116502275 - L2 LINE L2 -2 3311 3176 209 274 53 42 chr12 27284934 27285029 -116501426 + L2 LINE L2 3217 3312 -1 180 171 146 0 chr12 27285015 27285056 -116501399 + MIR3 SINE MIR 136 182 -26 * 2247 97 0 3 chr12 27285397 27285720 -116500735 + AluSg SINE Alu 1 310 0 1375 275 71 80 chr12 27286014 27286731 -116499724 - MER21B LTR ERV1 -124 739 29 1444 273 87 26 chr12 27286856 27287647 -116498808 + L2 LINE L2 2467 3313 0 542 257 53 26 chr12 27287747 27287899 -116498556 + MIR SINE MIR 9 164 -98 231 343 111 0 chr12 27288073 27288181 -116498274 + MIR3 SINE MIR 88 207 -1 274 192 0 0 chr12 27291853 27291905 -116494550 + MIR SINE MIR 47 98 -164 681 217 66 57 chr12 27291948 27292160 -116494295 - L2 LINE L2 0 3313 3100 870 87 0 39 chr12 27292589 27292716 -116493739 - L1PA8 LINE L1 -8 6164 6043 3603 109 26 43 chr12 27292831 27293364 -116493091 - MER1A DNA MER1_type 0 527 4 2263 78 17 3 chr12 27295143 27295436 -116491019 - AluSq SINE Alu -16 297 1 2155 163 21 0 chr12 27296919 27297256 -116489199 - MER2 DNA MER2_type 0 344 1 1932 163 0 3 chr12 27297809 27298110 -116488345 - AluSx SINE Alu -12 300 1 392 0 21 0 chr12 27298145 27298193 -116488262 + (TA)n Simple_repeat Simple_repeat 1 49 0 685 264 0 0 chr12 27300699 27300843 -116485612 - MIR SINE MIR -39 223 80 984 155 0 0 chr12 27300881 27301029 -116485426 + AluSg/x SINE Alu 141 288 -24 376 295 58 12 chr12 27302068 27302247 -116484208 + MIR SINE MIR 31 213 -49 302 301 154 0 chr12 27302385 27302528 -116483927 + MIR SINE MIR 86 250 -12 21 57 0 0 chr12 27303458 27303493 -116482962 + GC_rich Low_complexity Low_complexity 1 35 0 1568 185 3 20 chr12 27304209 27304501 -116481954 - AluJo SINE Alu -25 287 1 2146 80 0 0 chr12 27304532 27304795 -116481660 + AluSg SINE Alu 13 275 -35 240 331 121 13 chr12 27305719 27305876 -116480579 - MIR SINE MIR -4 258 85 423 38 0 0 chr12 27307474 27307527 -116478928 + (TG)n Simple_repeat Simple_repeat 2 54 0 687 226 16 0 chr12 27307741 27307865 -116478590 - FLAM_A SINE Alu -7 126 1 1628 190 61 28 chr12 27308045 27308439 -116478016 + L1ME2 LINE L1 5757 6163 -1 385 313 157 40 chr12 27308525 27308567 -116477888 + L2 LINE L2 2027 2063 -1251 1150 255 114 52 chr12 27308567 27309101 -116477354 - MLT1F1 LTR MaLR 0 567 1 385 313 157 40 chr12 27309101 27309358 -116477097 + L2 LINE L2 2063 2361 -953 376 313 57 72 chr12 27309391 27309809 -116476646 - L2 LINE L2 -1387 1927 1516 207 0 0 0 chr12 27310166 27310189 -116476266 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 322 311 28 19 chr12 27310399 27310505 -116475950 + L2 LINE L2 3153 3259 -13 842 275 9 0 chr12 27310959 27311170 -116475285 + MIR SINE MIR 14 226 -36 252 213 225 12 chr12 27312350 27312430 -116474025 + L2 LINE L2 3169 3265 -7 464 195 127 8 chr12 27313201 27313319 -116473136 - L2 LINE L2 -5 3267 3136 398 185 163 0 chr12 27313903 27313995 -116472460 + L2 LINE L2 3161 3267 -5 277 41 0 61 chr12 27314729 27314778 -116471677 + (GGGAA)n Simple_repeat Simple_repeat 4 49 0 188 361 19 9 chr12 27315146 27315254 -116471201 - MIR3 SINE MIR -85 123 15 454 310 43 43 chr12 27315268 27315523 -116470932 + MARNA DNA Mariner 296 550 -36 216 0 0 0 chr12 27317398 27317422 -116469033 + (A)n Simple_repeat Simple_repeat 1 24 0 525 299 98 61 chr12 27318042 27318450 -116468005 + L2 LINE L2 2848 3270 -2 219 69 0 0 chr12 27318969 27318998 -116467457 + (CA)n Simple_repeat Simple_repeat 2 30 0 730 244 74 11 chr12 27318998 27319174 -116467281 - MIR SINE MIR -74 188 2 548 347 28 16 chr12 27320313 27320564 -116465891 - L2 LINE L2 -508 2806 2553 2105 145 0 0 chr12 27321203 27321500 -116464955 + AluSx SINE Alu 1 297 -15 551 189 50 79 chr12 27321834 27322519 -116463936 + L1ME1 LINE L1 5187 5890 -288 2156 109 7 0 chr12 27322519 27322804 -116463651 + AluSx SINE Alu 1 287 -25 470 17 0 17 chr12 27322804 27322864 -116463591 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 551 189 50 79 chr12 27322864 27323008 -116463447 + L1ME1 LINE L1 5888 6174 -4 235 311 40 74 chr12 27323659 27323807 -116462648 + HAL1 LINE L1 1 143 -2364 238 342 60 25 chr12 27324223 27324422 -116462033 + HAL1 LINE L1 825 1030 -1477 530 86 0 0 chr12 27324512 27324582 -116461873 + AluSc SINE Alu 233 302 -7 366 285 59 55 chr12 27324833 27325086 -116461369 + HAL1 LINE L1 2245 2498 -9 563 178 0 19 chr12 27325162 27325269 -116461186 + FLAM_A SINE Alu 34 138 -4 1941 200 97 16 chr12 27325489 27325973 -116460482 - Charlie1b DNA MER1_type 0 523 1 644 283 24 39 chr12 27326240 27326475 -116459980 + MIR SINE MIR 16 243 -19 24 0 0 0 chr12 27327737 27327761 -116458694 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 27328331 27328352 -116458103 + AT_rich Low_complexity Low_complexity 1 21 0 2040 150 3 0 chr12 27329108 27329408 -116457047 - AluJb SINE Alu -11 301 1 4239 16 4 0 chr12 27329537 27330042 -116456413 - L1PA2 LINE L1 -141 6014 5508 * 12351 22 0 0 chr12 27330036 27331552 -116454903 + L1P LINE L1 3888 5403 -743 429 179 0 13 chr12 27331552 27331630 -116454825 - MER5A DNA MER1_type -111 78 2 247 302 35 0 chr12 27331774 27331860 -116454595 - MIR SINE MIR -2 260 172 794 216 93 10 chr12 27332224 27332418 -116454037 + MER63A DNA MER1_type 1 210 0 209 319 101 0 chr12 27332721 27332790 -116453665 - L2 LINE L2 -48 3224 3149 24 67 0 0 chr12 27333053 27333098 -116453357 + AT_rich Low_complexity Low_complexity 1 45 0 384 305 106 21 chr12 27333270 27333411 -116453044 + MIR SINE MIR 1 153 -109 646 233 67 22 chr12 27333895 27334075 -116452380 - L2 LINE L2 -6 3307 3120 257 210 136 0 chr12 27334427 27334508 -116451947 + MIR SINE MIR 51 142 -120 279 274 108 0 chr12 27336911 27337013 -116449442 - MIR SINE MIR -55 207 95 260 291 0 12 chr12 27337052 27337138 -116449317 + L1ME3A LINE L1 6 90 -6029 233 225 56 28 chr12 27337224 27337295 -116449160 + L1ME3A LINE L1 499 571 -5548 249 128 0 0 chr12 27337340 27337387 -116449068 + (GA)n Simple_repeat Simple_repeat 2 48 0 890 203 66 85 chr12 27337417 27337840 -116448615 + L1MC5 LINE L1 7503 7917 -44 514 282 61 71 chr12 27337857 27338046 -116448409 + L1ME3A LINE L1 562 751 -5368 396 0 0 0 chr12 27338046 27338090 -116448365 + (CA)n Simple_repeat Simple_repeat 2 45 0 514 282 61 71 chr12 27338090 27338493 -116447962 + L1ME3A LINE L1 751 1148 -4971 341 314 70 46 chr12 27338753 27339381 -116447074 + L1ME3A LINE L1 4573 5215 -914 372 268 150 0 chr12 27339422 27339575 -116446880 + L1ME3A LINE L1 5263 5438 -707 329 298 61 53 chr12 27339583 27339858 -116446597 + L1ME3A LINE L1 5491 5689 -415 1921 136 17 31 chr12 27339878 27340172 -116446283 - AluJb SINE Alu -22 290 1 301 260 58 143 chr12 27340174 27340482 -116445973 + L1ME3A LINE L1 5760 6041 -112 1496 210 33 46 chr12 27343802 27344197 -116442258 + MLT1B LTR MaLR 1 390 0 219 180 60 20 chr12 27344511 27344561 -116441894 + L3 LINE CR1 1516 1567 -10 1741 130 80 44 chr12 27344679 27345041 -116441414 + THE1C LTR MaLR 1 375 0 207 286 0 14 chr12 27345233 27345303 -116441152 + A-rich Low_complexity Low_complexity 2 70 0 3981 123 14 2 chr12 27345643 27346268 -116440187 + MER41B LTR ERV1 3 635 0 2237 102 0 3 chr12 27346269 27346562 -116439893 - AluSg SINE Alu -17 293 2 855 180 73 22 chr12 27346568 27346746 -116439709 + MER5A DNA MER1_type 3 189 0 757 158 8 0 chr12 27348315 27348435 -116438020 - FLAM_C SINE Alu -22 121 1 1181 238 69 89 chr12 27348695 27349346 -116437109 + MER21B LTR ERV1 98 735 -128 2846 13 0 0 chr12 27349693 27350004 -116436451 + AluY SINE Alu 1 311 0 618 321 186 14 chr12 27350341 27350771 -116435684 + L2 LINE L2 2809 3312 -1 349 322 142 11 chr12 27350992 27351175 -116435280 + MIR SINE MIR 18 224 -38 221 171 24 0 chr12 27353175 27353216 -116433239 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 198 357 102 10 chr12 27353226 27353324 -116433131 + L2 LINE L2 3158 3264 -8 2038 160 0 0 chr12 27354212 27354518 -116431937 + AluSx SINE Alu 1 306 -6 289 176 0 0 chr12 27354663 27354714 -116431741 + MSTB LTR MaLR 1 51 -375 203 147 0 0 chr12 27354732 27354766 -116431689 - MIR SINE MIR -111 151 118 2435 157 36 7 chr12 27354766 27355180 -116431275 + MSTB LTR MaLR 1 426 0 2088 99 0 44 chr12 27355290 27355625 -116430830 - AluY SINE Alu 0 322 1 235 331 115 34 chr12 27356495 27356764 -116429691 + L2 LINE L2 1890 2180 -1134 218 312 84 59 chr12 27356851 27357053 -116429402 - MIR SINE MIR -40 222 16 1247 134 51 51 chr12 27361477 27361694 -116424761 - AluJb SINE Alu -10 302 86 2056 222 29 2 chr12 27361853 27362308 -116424147 + L2 LINE L2 2335 2801 -513 455 146 45 0 chr12 27362310 27362399 -116424056 - MER53 DNA DNA 0 189 97 719 333 35 32 chr12 27362413 27362761 -116423694 + L2 LINE L2 2804 3152 -161 419 282 40 20 chr12 27362912 27363061 -116423394 + L2 LINE L2 3162 3313 0 3642 154 45 11 chr12 27363086 27363782 -116422673 + L1MB8 LINE L1 5456 6174 -4 180 131 33 16 chr12 27363786 27363847 -116422608 + A-rich Low_complexity Low_complexity 4 65 0 267 333 17 47 chr12 27364217 27364361 -116422094 - MIR SINE MIR -51 157 17 189 0 0 0 chr12 27364546 27364567 -116421888 + (TTC)n Simple_repeat Simple_repeat 2 22 0 2359 100 7 3 chr12 27364570 27364880 -116421575 - AluSx SINE Alu -1 311 1 517 264 188 4 chr12 27365076 27365315 -116421140 + L2 LINE L2 2188 2470 -844 251 260 40 90 chr12 27365545 27365645 -116420810 + L2 LINE L2 3219 3313 0 192 377 19 19 chr12 27365663 27365769 -116420686 - L2 LINE L2 -780 2534 2429 23 68 0 0 chr12 27366562 27366606 -116419849 + AT_rich Low_complexity Low_complexity 1 44 0 451 344 49 9 chr12 27367066 27367290 -116419165 - MIR SINE MIR -6 256 24 317 303 151 37 chr12 27368806 27369024 -116417431 + MIR SINE MIR 7 249 -13 696 323 101 63 chr12 27369300 27370629 -116415826 + L2 LINE L2 1817 3205 -67 360 0 0 0 chr12 27371072 27371112 -116415343 + (TG)n Simple_repeat Simple_repeat 2 41 0 2258 110 0 0 chr12 27371155 27371456 -116414999 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 27372059 27372081 -116414374 + AT_rich Low_complexity Low_complexity 1 22 0 222 289 0 0 chr12 27372101 27372153 -116414302 + L2 LINE L2 3217 3268 -4 281 348 145 0 chr12 27372521 27372659 -116413796 - MIR3 SINE MIR -22 186 29 30 45 0 0 chr12 27373289 27373333 -116413122 + AT_rich Low_complexity Low_complexity 1 44 0 220 232 20 0 chr12 27373346 27373445 -116413010 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 243 165 54 chr12 27373782 27373953 -116412502 + MIR3 SINE MIR 3 186 -59 2171 127 3 0 chr12 27373964 27374256 -116412199 + AluSx SINE Alu 3 295 -17 380 364 59 29 chr12 27375905 27376389 -116410066 - L2 LINE L2 -43 3229 2728 865 212 11 11 chr12 27376460 27376644 -116409811 + AluJo SINE Alu 120 303 -9 372 340 130 42 chr12 27376796 27377173 -116409282 - L2 LINE L2 -341 2973 2564 2337 122 0 0 chr12 27377859 27378171 -116408284 + AluSq SINE Alu 1 312 -1 309 234 0 85 chr12 27378244 27378338 -116408117 + MIR SINE MIR 176 261 -1 1796 128 0 0 chr12 27378734 27378991 -116407464 + AluSx SINE Alu 52 308 -4 28 29 0 0 chr12 27379091 27379126 -116407329 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr12 27379437 27379463 -116406992 + (T)n Simple_repeat Simple_repeat 1 26 0 1091 140 45 0 chr12 27380318 27380497 -116405958 - MER20 DNA MER1_type -4 215 29 566 222 41 41 chr12 27380745 27380916 -116405539 + MIR SINE MIR 72 242 -20 660 335 56 42 chr12 27380917 27381275 -116405180 + L2 LINE L2 2910 3272 0 342 321 18 18 chr12 27382273 27382382 -116404073 + L3 LINE CR1 401 509 -1068 307 264 46 0 chr12 27382616 27382703 -116403752 - MER58 DNA MER1_type -124 91 1 198 372 47 14 chr12 27382913 27383061 -116403394 + L3 LINE CR1 816 968 -609 455 219 69 94 chr12 27383532 27383765 -116402690 - L3 LINE CR1 -205 1372 1146 219 396 19 9 chr12 27383899 27384005 -116402450 - MIR3 SINE MIR -87 121 15 354 23 0 0 chr12 27387060 27387103 -116399352 + (CA)n Simple_repeat Simple_repeat 2 44 0 260 288 0 14 chr12 27389922 27389995 -116396460 + MER5A DNA MER1_type 38 109 -80 25 51 0 0 chr12 27390122 27390161 -116396294 + AT_rich Low_complexity Low_complexity 1 39 0 1950 141 43 27 chr12 27390381 27390750 -116395705 + THE1C LTR MaLR 1 375 0 423 182 0 0 chr12 27390817 27390894 -116395561 + L1MA10 LINE L1 6256 6332 -2 458 305 86 10 chr12 27392498 27392695 -116393760 + MIR SINE MIR 13 224 -38 29 70 0 0 chr12 27392697 27392754 -116393701 + AT_rich Low_complexity Low_complexity 1 57 0 24 77 0 0 chr12 27392866 27392918 -116393537 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 27393982 27394004 -116392451 + AT_rich Low_complexity Low_complexity 1 22 0 212 205 26 8 chr12 27395113 27395230 -116391225 + (TTAA)n Simple_repeat Simple_repeat 1 119 0 299 197 24 39 chr12 27395252 27395379 -116391076 + (TTAA)n Simple_repeat Simple_repeat 1 125 0 385 364 40 11 chr12 27395449 27395625 -116390830 + MIR3 SINE MIR 16 196 -12 1396 79 0 0 chr12 27397588 27397765 -116388690 - AluSg/x SINE Alu -2 310 134 1854 172 0 3 chr12 27397765 27398068 -116388387 - AluSx SINE Alu -9 303 2 802 145 0 0 chr12 27398119 27398236 -116388219 - FLAM_C SINE Alu -10 133 17 23 33 0 0 chr12 27398272 27398302 -116388153 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 27398550 27398575 -116387880 + AT_rich Low_complexity Low_complexity 1 25 0 216 269 19 0 chr12 27398738 27398790 -116387665 - L2 LINE L2 -93 3220 3168 21 57 0 0 chr12 27399075 27399110 -116387345 + AT_rich Low_complexity Low_complexity 1 35 0 254 250 0 33 chr12 27399234 27399294 -116387161 + MER5A DNA MER1_type 27 84 -105 313 229 104 90 chr12 27399313 27399457 -116386998 + MIR SINE MIR 117 262 0 335 280 11 11 chr12 27399787 27399880 -116386575 + MIR3 SINE MIR 110 202 -6 349 247 86 0 chr12 27400406 27400487 -116385968 - MIR SINE MIR -14 248 161 21 0 0 0 chr12 27401264 27401285 -116385170 + AT_rich Low_complexity Low_complexity 1 21 0 192 468 8 0 chr12 27401611 27401735 -116384720 - L3b LINE CR1 -48 1535 1411 2213 102 0 6 chr12 27402873 27403186 -116383269 - AluY SINE Alu 0 311 1 30 45 0 0 chr12 27403574 27403618 -116382837 + AT_rich Low_complexity Low_complexity 1 44 0 249 264 59 26 chr12 27405755 27405868 -116380587 + MIR SINE MIR 29 143 -65 2048 105 14 0 chr12 27405897 27406183 -116380272 - AluSx SINE Alu -20 292 3 1679 101 3 5 chr12 27406184 27406517 -116379938 - L1P4 LINE L1 -664 5501 5170 34 0 0 0 chr12 27409257 27409291 -116377164 + AT_rich Low_complexity Low_complexity 1 34 0 720 191 0 0 chr12 27409793 27409924 -116376531 + FLAM_A SINE Alu 1 131 -2 2230 82 0 0 chr12 27410560 27410868 -116375587 + AluSg SINE Alu 1 308 0 4412 114 11 1 chr12 27410870 27411527 -116374928 + L1PA15 LINE L1 5490 6152 -13 32 26 0 0 chr12 27411721 27411760 -116374695 + AT_rich Low_complexity Low_complexity 1 39 0 577 309 97 47 chr12 27411929 27412802 -116373653 + L1MC4a LINE L1 3376 4292 -1854 413 279 90 33 chr12 27412812 27413056 -116373399 + L1MC4a LINE L1 5815 6072 -1736 722 223 211 57 chr12 27413167 27413777 -116372678 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27414271 27414292 -116372163 + AT_rich Low_complexity Low_complexity 1 21 0 201 333 63 18 chr12 27415123 27415234 -116371221 + L3 LINE CR1 1389 1504 -73 2590 227 146 13 chr12 27415273 27416091 -116370364 + L1MC4a LINE L1 6818 7743 -65 262 261 19 137 chr12 27416986 27417147 -116369308 - L2 LINE L2 -4 3309 3168 22 56 0 0 chr12 27417434 27417470 -116368985 + AT_rich Low_complexity Low_complexity 1 36 0 1987 100 0 0 chr12 27417584 27417854 -116368601 + AluSx SINE Alu 7 276 -36 211 271 0 17 chr12 27418002 27418061 -116368394 - L2 LINE L2 -5 3308 3251 188 297 78 0 chr12 27418437 27418501 -116367954 - L2 LINE L2 0 3272 3204 209 289 0 0 chr12 27421078 27421130 -116365325 + L2 LINE L2 3262 3313 0 73 62 0 0 chr12 27421212 27421341 -116365114 + AT_rich Low_complexity Low_complexity 1 129 0 184 282 0 0 chr12 27421996 27422035 -116364420 - L2 LINE L2 -12 3260 3222 2013 108 14 3 chr12 27422452 27422748 -116363707 - AluSc SINE Alu -10 299 1 32 43 0 0 chr12 27422944 27422990 -116363465 + AT_rich Low_complexity Low_complexity 1 46 0 436 273 39 23 chr12 27425316 27425444 -116361011 - L2 LINE L2 0 3313 3184 414 286 56 19 chr12 27427416 27427577 -116358878 + MLT1L LTR MaLR 112 278 -337 216 0 0 0 chr12 27427610 27427634 -116358821 + (CAA)n Simple_repeat Simple_repeat 2 25 0 395 298 90 34 chr12 27427689 27427965 -116358490 + MLT1L LTR MaLR 238 509 -2 452 312 196 3 chr12 27427981 27428282 -116358173 + L3 LINE CR1 766 1124 -453 283 314 192 12 chr12 27428547 27428719 -116357736 + L3 LINE CR1 1374 1576 -1 199 299 91 98 chr12 27428763 27429017 -116357438 - L2 LINE L2 -34 3238 2987 330 302 80 88 chr12 27429023 27429567 -116356888 + L2 LINE L2 2245 2761 -553 697 266 11 6 chr12 27431878 27432055 -116354400 - MIR SINE MIR -28 234 57 339 344 62 10 chr12 27432104 27432412 -116354043 + MARNA DNA Mariner 10 333 -253 3485 275 142 8 chr12 27432467 27433756 -116352699 - L2 LINE L2 -755 2559 1099 391 336 34 20 chr12 27434417 27434566 -116351889 + L2 LINE L2 3121 3271 -1 271 300 46 39 chr12 27436815 27436945 -116349510 - L2 LINE L2 -31 3282 3152 1520 229 39 30 chr12 27437216 27437679 -116348776 + MLT1C LTR MaLR 1 467 0 423 0 0 0 chr12 27438758 27438805 -116347650 + (CA)n Simple_repeat Simple_repeat 1 47 0 616 229 20 85 chr12 27439378 27439579 -116346876 + MER5A DNA MER1_type 2 189 0 1218 195 87 40 chr12 27439901 27440311 -116346144 + MSTB2 LTR MaLR 19 457 0 27 81 0 0 chr12 27440353 27440415 -116346040 + AT_rich Low_complexity Low_complexity 1 62 0 580 246 69 23 chr12 27441216 27441391 -116345064 + L2 LINE L2 3116 3298 -15 519 60 0 0 chr12 27441393 27441460 -116344995 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 2114 105 0 11 chr12 27441585 27441902 -116344553 - AluSc SINE Alu 0 314 1 211 383 31 23 chr12 27442170 27442298 -116344157 + MIR SINE MIR 56 184 -78 234 0 0 0 chr12 27442741 27442767 -116343688 + (A)n Simple_repeat Simple_repeat 1 26 0 207 286 0 14 chr12 27443032 27443102 -116343353 + A-rich Low_complexity Low_complexity 2 70 0 4473 105 3 0 chr12 27443442 27444073 -116342382 + MER41B LTR ERV1 3 635 0 2186 102 3 3 chr12 27444074 27444367 -116342088 - AluSg SINE Alu -17 293 1 1052 264 139 20 chr12 27444377 27445050 -116341405 - L2 LINE L2 -8 3305 2540 491 281 89 55 chr12 27445104 27445339 -116341116 + MIR SINE MIR 9 251 -11 312 325 75 42 chr12 27445430 27445642 -116340813 - L2 LINE L2 -556 2758 2540 421 303 123 66 chr12 27446823 27447463 -116338992 + L2 LINE L2 1824 2500 -814 264 325 67 8 chr12 27448021 27448141 -116338314 + MER5A DNA MER1_type 7 133 -56 1066 211 0 19 chr12 27448737 27448945 -116337510 + MER58A DNA MER1_type 2 205 -19 531 208 0 0 chr12 27449018 27449143 -116337312 + (TA)n Simple_repeat Simple_repeat 1 125 0 1157 149 0 0 chr12 27449551 27449748 -116336707 - AluSx SINE Alu 0 312 116 254 61 0 0 chr12 27449748 27449781 -116336674 + MADE1 DNA Mariner 5 37 -43 915 117 0 0 chr12 27449789 27449909 -116336546 - AluSx SINE Alu -192 121 2 2319 109 0 0 chr12 27450062 27450365 -116336090 - AluSx SINE Alu -6 306 4 2221 92 7 0 chr12 27450781 27451109 -116335346 + AluSp SINE Alu 1 330 0 2628 148 144 11 chr12 27451498 27451963 -116334492 - MER1A DNA MER1_type 0 527 1 309 265 69 10 chr12 27452033 27452135 -116334320 - L2 LINE L2 -33 3280 3173 1850 270 62 8 chr12 27452294 27452905 -116333550 - L2 LINE L2 -939 2375 1732 219 235 0 0 chr12 27452982 27453033 -116333422 + CT-rich Low_complexity Low_complexity 2 52 0 289 208 26 26 chr12 27453279 27453356 -116333099 + L2 LINE L2 3188 3264 -49 209 231 19 19 chr12 27454085 27454137 -116332318 - MIR SINE MIR -56 152 101 336 83 0 0 chr12 27454742 27454790 -116331665 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 331 131 38 chr12 27456316 27456660 -116329795 + L2 LINE L2 2891 3266 -6 643 319 100 24 chr12 27456740 27457151 -116329304 + L2 LINE L2 2871 3312 -1 806 284 43 30 chr12 27457186 27457489 -116328966 + MER102b DNA MER1_type 6 312 -29 237 293 0 0 chr12 27457910 27457992 -116328463 + L1M3 LINE L1 5350 5431 -740 1160 214 31 14 chr12 27458127 27458421 -116328034 + L1ME4a LINE L1 5566 5864 -257 2018 141 0 0 chr12 27460266 27460583 -116325872 - AluSx SINE Alu 0 317 1 2786 7 0 3 chr12 27461908 27462215 -116324240 + AluYa5 SINE Alu 1 306 -5 249 250 56 118 chr12 27463092 27463236 -116323219 - L2 LINE L2 -18 3295 3161 28 0 0 0 chr12 27463903 27463931 -116322524 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 27466652 27466686 -116319769 + AT_rich Low_complexity Low_complexity 1 34 0 732 191 0 0 chr12 27467189 27467320 -116319135 + FLAM_A SINE Alu 1 131 -2 2386 79 0 16 chr12 27467956 27468271 -116318184 + AluSg SINE Alu 1 310 0 229 333 12 0 chr12 27470123 27470204 -116316251 + (TATG)n Simple_repeat Simple_repeat 1 82 0 312 319 44 69 chr12 27470546 27470750 -116315705 + MIR SINE MIR 3 201 -61 311 178 22 44 chr12 27471472 27471562 -116314893 + L1MC4 LINE L1 6615 6702 -1340 328 278 158 13 chr12 27471771 27472005 -116314450 + L1MC/D LINE L1 5549 5816 -1992 2286 81 0 13 chr12 27472113 27472411 -116314044 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 27472607 27472653 -116313802 + AT_rich Low_complexity Low_complexity 1 46 0 432 273 39 23 chr12 27474980 27475108 -116311347 - L2 LINE L2 0 3313 3184 467 308 22 33 chr12 27476224 27476406 -116310049 - MIR SINE MIR -51 211 32 719 244 112 0 chr12 27476834 27477031 -116309424 + MIR SINE MIR 19 237 -25 192 379 57 36 chr12 27477759 27477899 -116308556 - L2 LINE L2 -3 3269 3127 2158 108 3 3 chr12 27477927 27478223 -116308232 + AluSq SINE Alu 1 296 -17 778 315 108 51 chr12 27478393 27478598 -116307857 - L2 LINE L2 -403 2911 2719 2585 65 0 0 chr12 27478598 27478905 -116307550 + AluY SINE Alu 1 307 -4 778 315 108 51 chr12 27478905 27479626 -116306829 - L2 LINE L2 -595 2719 1932 368 211 33 0 chr12 27479943 27480033 -116306422 - L1MA7 LINE L1 -448 5843 5751 1205 146 132 109 chr12 27480043 27480400 -116306055 + L1MA6 LINE L1 5927 6300 0 1510 119 13 0 chr12 27480858 27481094 -116305361 + L1MA5 LINE L1 6043 6281 -19 32 0 0 0 chr12 27481807 27481839 -116304616 + AT_rich Low_complexity Low_complexity 1 32 0 2254 123 0 0 chr12 27481884 27482192 -116304263 + AluSx SINE Alu 1 308 -4 635 210 6 34 chr12 27482846 27483022 -116303433 + L1MA10 LINE L1 6160 6330 -4 373 269 76 34 chr12 27483574 27483693 -116302762 - MIR SINE MIR -111 151 28 2291 55 0 4 chr12 27484083 27484357 -116302098 + AluY SINE Alu 26 298 -13 2446 66 0 3 chr12 27484542 27484846 -116301609 - AluY SINE Alu -4 307 5 2208 80 0 77 chr12 27485106 27485431 -116301024 - AluSx SINE Alu -10 302 3 756 213 13 13 chr12 27486236 27486386 -116300069 - FRAM SINE Alu -14 162 13 865 215 44 22 chr12 27486786 27487014 -116299441 + MIR SINE MIR 30 262 0 270 0 0 0 chr12 27490588 27490618 -116295837 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 293 94 0 chr12 27490982 27491177 -116295278 + MIR SINE MIR 35 248 -14 782 274 114 52 chr12 27491769 27492363 -116294092 + L1ME3 LINE L1 5254 5884 -278 398 319 48 110 chr12 27492747 27493183 -116293272 + L2 LINE L2 2864 3272 0 850 119 0 16 chr12 27493496 27493622 -116292833 + FLAM_C SINE Alu 13 136 -7 1436 204 6 44 chr12 27493624 27493942 -116292513 + AluJo SINE Alu 1 306 -6 351 78 0 0 chr12 27495261 27495312 -116291143 + (TG)n Simple_repeat Simple_repeat 2 52 0 524 219 16 60 chr12 27495480 27495663 -116290792 + MER104 DNA MER2_type 4 178 -2 3656 143 40 47 chr12 27496073 27496813 -116289642 + L1MB7 LINE L1 5441 6175 -9 414 0 0 0 chr12 27497356 27497402 -116289053 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 275 44 55 chr12 27498658 27498749 -116287706 + L2 LINE L2 2990 3079 -193 4643 75 0 90 chr12 27499461 27500191 -116286264 + MER4A LTR ERV1 1 664 0 2159 82 0 66 chr12 27500219 27500538 -116285917 - AluSg1 SINE Alu -11 298 1 270 0 0 0 chr12 27501146 27501176 -116285279 + (CA)n Simple_repeat Simple_repeat 1 30 0 1795 149 6 51 chr12 27503227 27503542 -116282913 + AluJb SINE Alu 3 303 -9 213 175 0 0 chr12 27503547 27503587 -116282868 + GA-rich Low_complexity Low_complexity 3 42 0 1181 57 6 0 chr12 27503593 27503751 -116282704 + (GGAAA)n Simple_repeat Simple_repeat 5 163 0 1052 30 8 0 chr12 27503896 27504028 -116282427 + (GGAAA)n Simple_repeat Simple_repeat 4 136 0 25 31 0 0 chr12 27504263 27504295 -116282160 + AT_rich Low_complexity Low_complexity 1 32 0 6003 106 8 20 chr12 27504885 27505219 -116281236 + L1PA15 LINE L1 5170 5506 -659 2076 125 0 0 chr12 27505219 27505527 -116280928 + AluSx SINE Alu 3 310 0 6003 106 8 20 chr12 27505527 27506186 -116280269 + L1PA15 LINE L1 5506 6152 -13 32 26 0 0 chr12 27506380 27506419 -116280036 + AT_rich Low_complexity Low_complexity 1 39 0 498 305 100 49 chr12 27506588 27507461 -116278994 + L1MC4a LINE L1 3376 4292 -1854 397 279 90 33 chr12 27507471 27507715 -116278740 + L1MC4a LINE L1 5815 6072 -1736 737 223 211 57 chr12 27507826 27508436 -116278019 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27508930 27508951 -116277504 + AT_rich Low_complexity Low_complexity 1 21 0 228 349 0 40 chr12 27509988 27510107 -116276348 + MER5B DNA MER1_type 2 127 -62 291 327 73 33 chr12 27510170 27510320 -116276135 + MIR SINE MIR 48 203 -59 1171 303 70 44 chr12 27513864 27514641 -116271814 - L2 LINE L2 -182 3131 2333 1481 282 36 39 chr12 27516511 27517099 -116269356 + L2 LINE L2 2382 2967 -347 414 244 136 99 chr12 27517248 27517469 -116268986 + MIR SINE MIR 29 257 -5 467 251 16 96 chr12 27517472 27517659 -116268796 + L2 LINE L2 3130 3301 -12 261 0 0 0 chr12 27519316 27519345 -116267110 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 27519657 27519687 -116266768 + AT_rich Low_complexity Low_complexity 1 30 0 1131 164 0 30 chr12 27520046 27520271 -116266184 - AluJb SINE Alu -16 296 1 2132 118 7 0 chr12 27520350 27520647 -116265808 - AluSx SINE Alu -13 299 1 1935 141 72 74 chr12 27521171 27521562 -116264893 + MLT1B LTR MaLR 1 390 0 1222 147 52 9 chr12 27522602 27522834 -116263621 + L1MA6 LINE L1 6052 6293 -7 514 325 120 38 chr12 27524083 27524843 -116261612 - L2 LINE L2 -2280 1034 213 514 279 16 0 chr12 27525756 27525885 -116260570 + MIR SINE MIR 1 131 -131 367 262 18 110 chr12 27526168 27526226 -116260229 + MIR SINE MIR 36 98 -164 2290 114 0 0 chr12 27526226 27526534 -116259921 - AluSg SINE Alu 0 310 3 367 262 18 110 chr12 27526534 27526639 -116259816 + MIR SINE MIR 98 184 -78 377 286 36 9 chr12 27527619 27527731 -116258724 - L2 LINE L2 -14 3299 3185 2198 104 0 29 chr12 27528687 27528996 -116257459 + AluSq SINE Alu 1 300 -13 626 236 89 108 chr12 27530026 27530285 -116256170 + MIR SINE MIR 7 260 -2 189 0 0 0 chr12 27530795 27530816 -116255639 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 183 42 0 0 chr12 27531017 27531041 -116255414 + (TG)n Simple_repeat Simple_repeat 1 24 0 299 113 19 0 chr12 27531043 27531096 -116255359 + GA-rich Low_complexity Low_complexity 2 55 0 1908 129 61 0 chr12 27531165 27531445 -116255010 + AluSx SINE Alu 1 297 -15 189 326 0 0 chr12 27532124 27532170 -116254285 - L3 LINE CR1 -11 1566 1521 417 110 0 0 chr12 27532220 27532293 -116254162 + (CA)n Simple_repeat Simple_repeat 1 73 0 197 274 113 0 chr12 27532519 27532581 -116253874 + MIR SINE MIR 82 150 -58 2142 160 47 89 chr12 27532792 27533285 -116253170 + MLT1D LTR MaLR 1 472 -33 432 200 10 11 chr12 27533793 27533897 -116252558 - L1MA4A LINE L1 -1 6274 6053 * 1582 132 26 32 chr12 27533894 27534204 -116252251 - L1MA4A LINE L1 -180 6123 5816 3987 166 8 6 chr12 27534210 27535403 -116251052 + L1MA4A LINE L1 4639 5833 -470 494 259 0 18 chr12 27535641 27535753 -116250702 + MIR3 SINE MIR 51 160 -48 194 344 0 22 chr12 27536174 27536264 -116250191 + L2 LINE L2 3226 3313 0 31 44 0 0 chr12 27537480 27537525 -116248930 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr12 27537872 27537907 -116248548 + AT_rich Low_complexity Low_complexity 1 35 0 255 103 0 0 chr12 27538352 27538391 -116248064 + (TTATA)n Simple_repeat Simple_repeat 2 40 0 390 354 43 10 chr12 27538907 27539116 -116247339 - MIR SINE MIR -16 246 31 1722 147 41 17 chr12 27539851 27540143 -116246312 - AluJo SINE Alu -13 299 1 246 105 0 0 chr12 27540377 27540415 -116246040 - L1MA3 LINE L1 0 6305 6268 206 275 8 133 chr12 27540415 27540535 -116245920 - L3 LINE CR1 -300 1277 1173 228 250 33 17 chr12 27540540 27540600 -116245855 + L3 LINE CR1 1445 1505 -72 486 286 75 12 chr12 27540631 27540872 -116245583 + MER112 DNA MER1_type 1 256 0 2252 90 3 0 chr12 27541166 27541455 -116245000 + AluY SINE Alu 1 290 -21 1030 180 30 30 chr12 27541845 27542045 -116244410 + MER3 DNA MER1_type 1 200 -9 1074 250 0 0 chr12 27542062 27542282 -116244173 - MER58A DNA MER1_type -1 223 4 442 234 9 0 chr12 27542454 27542561 -116243894 - L1PB4 LINE L1 -2 6154 6047 261 0 0 0 chr12 27544228 27544257 -116242198 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 27544434 27544454 -116242001 + (A)n Simple_repeat Simple_repeat 1 20 0 1926 147 0 10 chr12 27544458 27544758 -116241697 + AluSx SINE Alu 1 297 -15 776 265 40 16 chr12 27544891 27545140 -116241315 + MLT1L LTR MaLR 3 257 -358 509 268 16 0 chr12 27545303 27545430 -116241025 + MLT1L LTR MaLR 485 613 -2 349 325 97 34 chr12 27545924 27546130 -116240325 + MIR SINE MIR 40 258 -4 2019 294 145 25 chr12 27546166 27546951 -116239504 + L2 LINE L2 1915 2605 -708 1571 174 65 29 chr12 27546951 27547302 -116239153 - MLT1A1 LTR MaLR 0 365 2 2019 294 145 25 chr12 27547302 27547761 -116238694 + L2 LINE L2 2605 3309 -4 2256 164 0 18 chr12 27548608 27549005 -116237450 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr12 27549366 27549401 -116237054 + AT_rich Low_complexity Low_complexity 1 35 0 1818 27 0 5 chr12 27550370 27550590 -116235865 + L1PA5 LINE L1 5935 6153 -1 2023 105 51 0 chr12 27550951 27551227 -116235228 + AluSc SINE Alu 1 290 -19 239 234 0 0 chr12 27551350 27551397 -116235058 + (CA)n Simple_repeat Simple_repeat 2 48 0 698 296 74 49 chr12 27551594 27552110 -116234345 + HAL1 LINE L1 906 1449 -1058 1951 194 30 22 chr12 27552110 27552573 -116233882 + MLT1C LTR MaLR 1 467 0 698 296 74 49 chr12 27552573 27552830 -116233625 + HAL1 LINE L1 1449 1698 -809 617 69 11 0 chr12 27553127 27553214 -116233241 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 795 186 55 0 chr12 27553341 27553486 -116232969 + FAM SINE Alu 1 40 -9 407 35 0 35 chr12 27553486 27553544 -116232911 + (GGAGA)n Simple_repeat Simple_repeat 2 57 0 300 297 85 76 chr12 27553667 27553903 -116232552 + L1M2 LINE L1 896 1133 -5716 210 37 0 0 chr12 27553946 27553973 -116232482 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 744 87 11 62 chr12 27554003 27554378 -116232077 + (GGAGA)n Simple_repeat Simple_repeat 1 355 0 645 175 35 0 chr12 27554371 27554542 -116231913 + GA-rich Low_complexity Low_complexity 2 178 0 * 655 0 53 0 chr12 27555919 27556014 -116230441 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr12 27556180 27556201 -116230254 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr12 27556502 27556550 -116229905 + AT_rich Low_complexity Low_complexity 1 48 0 1824 172 3 7 chr12 27557257 27557565 -116228890 + AluJb SINE Alu 5 311 -1 445 247 215 11 chr12 27557634 27557913 -116228542 + L1ME LINE L1 5304 5650 -520 274 192 96 15 chr12 27557925 27558023 -116228432 + L1ME LINE L1 5720 5812 -309 185 384 58 17 chr12 27558133 27558305 -116228150 + L2 LINE L2 3094 3272 0 387 303 16 0 chr12 27559629 27559751 -116226704 + MIR SINE MIR 50 173 -89 719 150 18 5 chr12 27560216 27560487 -116225968 + LTR54B LTR ERV1 13 378 -132 365 54 18 0 chr12 27560808 27560864 -116225591 + LTR54 LTR ERV1 453 509 -1 402 21 0 0 chr12 27560975 27561022 -116225433 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 858 185 13 0 chr12 27561024 27561175 -116225280 - FRAM SINE Alu -30 146 1 311 206 0 0 chr12 27561179 27561242 -116225213 - AluJ/monomer SINE Alu -252 50 2 219 250 167 0 chr12 27561243 27561315 -116225140 + MIR SINE MIR 57 140 -122 786 296 153 19 chr12 27561336 27562094 -116224361 - L2 LINE L2 -6 3307 2446 451 359 68 29 chr12 27562090 27562371 -116224084 - L3 LINE CR1 -171 1406 1115 * 2238 184 21 2 chr12 27562578 27562996 -116223459 - MSTB LTR MaLR 0 426 1 230 228 9 79 chr12 27564210 27564324 -116222131 - L1ME4a LINE L1 -55 6066 5961 1782 168 62 47 chr12 27564780 27565167 -116221288 + MSTD LTR MaLR 1 393 -3 337 294 184 0 chr12 27565343 27565561 -116220894 - L1M4 LINE L1 -1559 4587 4330 403 267 158 0 chr12 27565828 27565974 -116220481 + MIR SINE MIR 84 252 -10 186 43 0 0 chr12 27566153 27566176 -116220279 + (TC)n Simple_repeat Simple_repeat 1 23 0 26 50 0 0 chr12 27566474 27566514 -116219941 + AT_rich Low_complexity Low_complexity 1 40 0 438 292 123 6 chr12 27567369 27567718 -116218737 - L1ME4a LINE L1 -119 6002 5613 21 36 0 0 chr12 27569091 27569119 -116217336 + AT_rich Low_complexity Low_complexity 1 28 0 295 292 0 0 chr12 27569490 27569555 -116216900 + L2 LINE L2 3208 3272 0 21 0 0 0 chr12 27569653 27569674 -116216781 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 27570203 27570227 -116216228 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr12 27570260 27570288 -116216167 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 442 291 85 36 chr12 27570816 27571063 -116215392 + LTR33 LTR ERVL 105 363 -158 23 0 0 0 chr12 27571473 27571496 -116214959 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 27571760 27571782 -116214673 + AT_rich Low_complexity Low_complexity 1 22 0 404 262 53 109 chr12 27571988 27572290 -116214165 - L2 LINE L2 -63 3250 2966 326 310 106 0 chr12 27572301 27572414 -116214041 + L2 LINE L2 3139 3263 -9 1000 173 5 33 chr12 27572563 27572777 -116213678 + MER3 DNA MER1_type 1 208 -1 553 288 137 17 chr12 27573042 27573409 -116213046 - L1ME4a LINE L1 -14 6107 5785 1894 141 7 0 chr12 27573409 27573686 -116212769 - AluJb SINE Alu -33 279 1 553 288 137 17 chr12 27573686 27573989 -116212466 - L1ME4a LINE L1 -336 5785 5347 1399 193 30 4 chr12 27574134 27574404 -116212051 - AluJo SINE Alu -20 292 16 340 298 18 18 chr12 27574665 27574779 -116211676 - L2 LINE L2 -10 3303 3190 371 254 119 30 chr12 27574819 27574953 -116211502 + MER58B DNA MER1_type 196 341 0 31 0 0 0 chr12 27574984 27575015 -116211440 + AT_rich Low_complexity Low_complexity 1 31 0 1490 271 123 74 chr12 27575135 27575258 -116211197 - L2 LINE L2 0 3313 3197 189 74 0 0 chr12 27575258 27575285 -116211170 + (TA)n Simple_repeat Simple_repeat 2 28 0 1490 271 123 74 chr12 27575285 27576375 -116210080 - L2 LINE L2 -116 3197 2006 2172 123 0 0 chr12 27577488 27577798 -116208657 + AluSg SINE Alu 1 310 0 186 118 0 0 chr12 27577801 27577835 -116208620 + (TA)n Simple_repeat Simple_repeat 2 35 0 309 51 0 0 chr12 27577835 27577874 -116208581 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 314 171 33 chr12 27577900 27578110 -116208345 + L3 LINE CR1 1045 1283 -294 7209 122 2 17 chr12 27578377 27578779 -116207676 + L1MA3 LINE L1 4765 5171 -1134 2283 112 0 0 chr12 27578779 27579084 -116207371 + AluSx SINE Alu 1 305 -7 7209 122 2 17 chr12 27579084 27579529 -116206926 + L1MA3 LINE L1 5171 5621 -684 2166 100 7 27 chr12 27579529 27579829 -116206626 + AluSx SINE Alu 1 294 -18 7209 122 2 17 chr12 27579829 27580545 -116205910 + L1MA3 LINE L1 5621 6305 0 206 175 50 0 chr12 27580623 27580663 -116205792 + L3 LINE CR1 1533 1574 -3 745 253 30 43 chr12 27580902 27581135 -116205320 - MIR SINE MIR -25 237 8 768 237 68 6 chr12 27581145 27581322 -116205133 + MER5A DNA MER1_type 1 188 -1 392 290 57 16 chr12 27583272 27583396 -116203059 + L2 LINE L2 3142 3270 -2 646 226 0 22 chr12 27583470 27583607 -116202848 - MLT1A1 LTR MaLR 0 365 232 4097 113 5 21 chr12 27583609 27584229 -116202226 - MER4B LTR ERV1 0 610 1 2313 121 15 0 chr12 27584229 27584561 -116201894 - MER4B-int LTR ERV1 0 6758 6422 198 118 0 0 chr12 27586228 27586262 -116200193 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 2338 109 0 0 chr12 27586680 27586983 -116199472 + AluSx SINE Alu 1 303 -9 214 312 21 0 chr12 27590752 27590845 -116195610 + CT-rich Low_complexity Low_complexity 1 95 0 289 311 6 44 chr12 27590913 27591093 -116195362 + CT-rich Low_complexity Low_complexity 6 178 0 243 300 27 9 chr12 27591184 27591294 -116195161 + T-rich Low_complexity Low_complexity 3 114 0 27 0 0 0 chr12 27591548 27591575 -116194880 + AT_rich Low_complexity Low_complexity 1 27 0 1772 210 22 27 chr12 27591587 27591992 -116194463 + L1MC4 LINE L1 6690 7092 -950 1854 249 89 8 chr12 27591993 27592608 -116193847 + L1MC4 LINE L1 7238 7902 -140 23 54 0 0 chr12 27592836 27592873 -116193582 + AT_rich Low_complexity Low_complexity 1 37 0 29 60 0 0 chr12 27593087 27593137 -116193318 + AT_rich Low_complexity Low_complexity 1 50 0 2157 113 20 0 chr12 27595129 27595430 -116191025 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr12 27595430 27595458 -116190997 + AT_rich Low_complexity Low_complexity 1 28 0 1540 198 13 20 chr12 27596965 27597263 -116189192 + AluJo SINE Alu 1 296 -16 1139 48 0 28 chr12 27598114 27598259 -116188196 + AluY SINE Alu 1 141 -170 1503 75 0 20 chr12 27598259 27598460 -116187995 + AluY SINE Alu 109 305 -6 1079 187 17 31 chr12 27598707 27599001 -116187454 + SVA Other Other 432 721 -665 27 0 0 0 chr12 27599093 27599120 -116187335 + AT_rich Low_complexity Low_complexity 1 27 0 1833 154 10 22 chr12 27599643 27599955 -116186500 + AluJb SINE Alu 4 311 -1 202 191 48 0 chr12 27600819 27600861 -116185594 + GA-rich Low_complexity Low_complexity 5 48 0 26 30 0 0 chr12 27600868 27600901 -116185554 + AT_rich Low_complexity Low_complexity 1 33 0 325 131 33 0 chr12 27601836 27601897 -116184558 + Alu SINE Alu 240 302 0 360 325 82 19 chr12 27602938 27603144 -116183311 + L2 LINE L2 2543 2761 -553 261 57 0 0 chr12 27603870 27603905 -116182550 + (CA)n Simple_repeat Simple_repeat 1 35 0 262 274 116 0 chr12 27604403 27604498 -116181957 + L1ME3A LINE L1 44 149 -5970 539 320 96 58 chr12 27604701 27604819 -116181636 + L1ME3A LINE L1 561 673 -5446 3402 148 55 6 chr12 27604819 27605441 -116181014 + L1MC2 LINE L1 5680 6331 -13 539 320 96 58 chr12 27605441 27605875 -116180580 + L1ME3A LINE L1 673 1134 -4985 255 236 42 0 chr12 27605916 27605988 -116180467 + HAL1 LINE L1 1500 1574 -933 1319 261 135 70 chr12 27606018 27606434 -116180021 + L1ME3A LINE L1 2411 2799 -3330 2384 68 0 0 chr12 27606434 27606752 -116179703 - AluY SINE Alu 0 318 1 1319 261 135 70 chr12 27606752 27607035 -116179420 + L1ME3A LINE L1 2799 3062 -3067 2599 139 9 36 chr12 27607035 27607481 -116178974 + Tigger2a DNA MER2_type 1 434 0 1319 261 135 70 chr12 27607481 27607960 -116178495 + L1ME3A LINE L1 3062 3508 -2621 1032 146 0 0 chr12 27607960 27608138 -116178317 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1319 261 135 70 chr12 27608138 27608590 -116177865 + L1ME3A LINE L1 3508 4150 -1979 506 283 167 60 chr12 27608736 27609366 -116177089 + L1ME3A LINE L1 5349 6045 -108 223 328 51 79 chr12 27609378 27609555 -116176900 + L3 LINE CR1 1405 1576 -1 435 273 179 41 chr12 27609631 27609972 -116176483 + MLT1L LTR MaLR 3 390 -225 484 327 73 0 chr12 27610161 27610326 -116176129 - MIR SINE MIR -70 192 16 261 196 22 0 chr12 27612925 27612971 -116173484 + MER81 DNA DNA 3 49 -65 2433 165 56 0 chr12 27613470 27613966 -116172489 + MER44D DNA MER2_type 15 605 0 6814 94 18 12 chr12 27614802 27615799 -116170656 + L1MA3 LINE L1 5303 6305 0 223 182 23 0 chr12 27615983 27616027 -116170428 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1948 143 0 10 chr12 27616272 27616580 -116169875 - AluJb SINE Alu -7 305 1 388 242 62 16 chr12 27617645 27617773 -116168682 + MIR SINE MIR 10 143 -119 2361 45 0 0 chr12 27617954 27618244 -116168211 + L1PA7 LINE L1 5859 6148 -6 187 288 96 56 chr12 27619017 27619142 -116167313 - L2 LINE L2 -2 3270 3141 539 215 33 0 chr12 27619269 27619390 -116167065 - MER94 DNA DNA -7 127 3 1702 178 7 3 chr12 27619623 27619915 -116166540 + AluJo SINE Alu 4 296 -16 334 185 11 11 chr12 27619986 27620078 -116166377 + CT-rich Low_complexity Low_complexity 1 92 0 239 253 55 33 chr12 27620183 27620274 -116166181 - L2 LINE L2 -44 3228 3136 206 220 40 0 chr12 27620626 27620676 -116165779 + GA-rich Low_complexity Low_complexity 4 55 0 183 204 0 0 chr12 27620693 27620742 -116165713 + GA-rich Low_complexity Low_complexity 2 50 0 24 53 0 0 chr12 27621711 27621749 -116164706 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 27622052 27622073 -116164382 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 27623449 27623471 -116162984 + AT_rich Low_complexity Low_complexity 1 22 0 1991 154 3 0 chr12 27624920 27625225 -116161230 + AluSx SINE Alu 2 307 -5 22 35 0 0 chr12 27625642 27625671 -116160784 + AT_rich Low_complexity Low_complexity 1 29 0 644 286 111 47 chr12 27626440 27626782 -116159673 + L2 LINE L2 2941 3304 -9 22 56 0 0 chr12 27626971 27627007 -116159448 + AT_rich Low_complexity Low_complexity 1 36 0 620 211 23 103 chr12 27628616 27628877 -116157578 - L1ME2 LINE L1 -1 6163 5924 1160 320 181 30 chr12 27628887 27629773 -116156682 + L3 LINE CR1 534 1552 -25 4501 35 2 0 chr12 27629786 27630327 -116156128 - L1PA4 LINE L1 0 6155 5614 499 116 0 42 chr12 27630608 27630703 -116155752 + L1PA10 LINE L1 6078 6168 0 234 331 69 29 chr12 27631803 27631978 -116154477 + MIR SINE MIR 47 228 -34 22 35 0 0 chr12 27632520 27632549 -116153906 + AT_rich Low_complexity Low_complexity 1 29 0 1545 235 67 0 chr12 27632577 27632922 -116153533 + MSTD LTR MaLR 1 368 -28 358 149 62 40 chr12 27633145 27633254 -116153201 + LTR16A LTR ERVL 1 109 -341 1747 176 8 41 chr12 27633255 27633618 -116152837 + MLT1A1 LTR MaLR 15 365 0 3134 185 32 112 chr12 27633618 27634585 -116151870 + MLT1A1-int LTR MaLR 1 887 -848 914 143 6 40 chr12 27634689 27634751 -116151704 + MLT1A1 LTR MaLR 197 260 -105 2725 94 3 0 chr12 27634751 27635114 -116151341 - THE1B LTR MaLR 0 364 1 914 143 6 40 chr12 27635114 27635226 -116151229 + MLT1A1 LTR MaLR 260 365 0 840 247 148 0 chr12 27635232 27635515 -116150940 + LTR16A LTR ERVL 126 450 0 222 191 0 0 chr12 27636259 27636306 -116150149 + T-rich Low_complexity Low_complexity 1 47 0 186 328 0 31 chr12 27636515 27636579 -116149876 - MIR3 SINE MIR -24 184 123 1261 212 62 58 chr12 27639386 27639508 -116146947 - L1MC4 LINE L1 0 8042 7922 348 43 0 0 chr12 27639508 27639554 -116146901 + (CA)n Simple_repeat Simple_repeat 1 46 0 1261 212 62 58 chr12 27639554 27639883 -116146572 - L1MC4 LINE L1 -120 7922 7589 247 222 200 0 chr12 27639909 27639999 -116146456 + L2 LINE L2 2667 2774 -540 617 37 0 12 chr12 27640078 27640159 -116146296 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 186 43 0 0 chr12 27640179 27640202 -116146253 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 409 294 9 0 chr12 27640264 27640373 -116146082 + L2 LINE L2 3204 3313 0 2129 151 16 16 chr12 27640549 27640934 -116145521 + L1MC1 LINE L1 5940 6324 -9 381 315 19 56 chr12 27641428 27641644 -116144811 - HAL1b LINE L1 -1094 254 47 661 323 74 15 chr12 27642829 27643232 -116143223 + LTR16A LTR ERVL 17 443 -7 445 324 91 43 chr12 27643265 27643475 -116142980 - MIR SINE MIR -30 232 13 2342 99 10 0 chr12 27643553 27643855 -116142600 - AluSc SINE Alu -4 305 1 229 35 0 0 chr12 27643952 27643981 -116142474 + Alu SINE Alu 176 204 -95 1629 211 87 24 chr12 27644946 27645362 -116141093 + MLT1F1 LTR MaLR 126 567 0 2541 65 0 0 chr12 27645648 27645958 -116140497 + AluY SINE Alu 1 310 -1 338 243 243 13 chr12 27646241 27646393 -116140062 + MIR SINE MIR 74 260 -2 27 49 0 0 chr12 27648523 27648564 -116137891 + AT_rich Low_complexity Low_complexity 1 41 0 441 242 88 46 chr12 27648963 27649164 -116137291 + MIR SINE MIR 3 206 -56 619 266 64 16 chr12 27650317 27650619 -116135836 - L2 LINE L2 -264 3049 2731 476 210 281 0 chr12 27652562 27652729 -116133726 + MIR SINE MIR 36 249 -13 1793 176 10 3 chr12 27652988 27653284 -116133171 - AluJo SINE Alu -12 300 3 23 54 0 0 chr12 27655003 27655040 -116131415 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 27655052 27655075 -116131380 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 27655101 27655122 -116131333 + AT_rich Low_complexity Low_complexity 1 21 0 1070 223 173 60 chr12 27655675 27656160 -116130295 + MLT1F LTR MaLR 3 542 0 337 55 55 0 chr12 27656424 27656479 -116129976 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 23 33 0 0 chr12 27658026 27658056 -116128399 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 21 chr12 27659142 27659154 -116127301 + AT_rich Low_complexity Low_complexity 1 12 -35 1708 168 14 14 chr12 27659154 27659446 -116127009 + AluJb SINE Alu 1 292 -20 37 0 0 21 chr12 27659446 27659481 -116126974 + AT_rich Low_complexity Low_complexity 12 47 0 244 259 32 55 chr12 27659543 27659763 -116126692 + L1MEd LINE L1 1024 1238 -4881 42503 35 2 1 chr12 27659873 27666025 -116120430 + L1PA3 LINE L1 1 6155 0 241 301 65 8 chr12 27666069 27666192 -116120263 + HAL1 LINE L1 1494 1623 -884 2396 88 0 0 chr12 27666195 27666491 -116119964 + AluSx SINE Alu 5 300 -12 2285 120 0 0 chr12 27666510 27666809 -116119646 + AluSx SINE Alu 1 299 -13 309 357 93 0 chr12 27666811 27666951 -116119504 + HAL1 LINE L1 1617 1769 -738 23 54 0 0 chr12 27667069 27667106 -116119349 + AT_rich Low_complexity Low_complexity 1 37 0 1924 160 3 3 chr12 27667633 27667933 -116118522 + AluJb SINE Alu 1 300 -12 400 264 47 42 chr12 27668009 27668202 -116118253 + L1MEd LINE L1 2199 2392 -3737 219 265 45 114 chr12 27668276 27668408 -116118047 + L2 LINE L2 3146 3268 -4 209 218 23 46 chr12 27669988 27670075 -116116380 + T-rich Low_complexity Low_complexity 6 90 0 24 53 0 0 chr12 27670708 27670746 -116115709 + AT_rich Low_complexity Low_complexity 1 38 0 1001 264 37 48 chr12 27670947 27671326 -116115129 - L1ME3A LINE L1 -275 5895 5521 322 329 160 9 chr12 27671431 27671650 -116114805 + MIR SINE MIR 9 260 -2 22 35 0 0 chr12 27673002 27673031 -116113424 + AT_rich Low_complexity Low_complexity 1 29 0 1035 206 17 0 chr12 27673180 27673360 -116113095 + MER5A DNA MER1_type 2 184 -5 2795 201 52 7 chr12 27673451 27674023 -116112432 - MER82 DNA MER2_type 0 653 56 572 229 24 36 chr12 27674586 27674752 -116111703 - MER5B DNA MER1_type -14 164 1 1846 184 0 3 chr12 27675631 27675940 -116110515 + AluJb SINE Alu 3 310 -2 883 286 130 38 chr12 27675981 27676428 -116110027 + L2 LINE L2 2824 3311 -2 32 57 0 0 chr12 27676471 27676524 -116109931 + AT_rich Low_complexity Low_complexity 1 53 0 27 0 0 0 chr12 27676708 27676735 -116109720 + AT_rich Low_complexity Low_complexity 1 27 0 1684 176 3 17 chr12 27678359 27678655 -116107800 - AluJb SINE Alu -20 292 1 235 235 0 24 chr12 27678819 27678904 -116107551 + GA-rich Low_complexity Low_complexity 1 83 0 777 189 18 0 chr12 27679268 27679437 -116107018 + L1MA9 LINE L1 6106 6277 -35 1990 150 10 13 chr12 27679450 27679763 -116106692 + AluJb SINE Alu 1 312 0 241 167 0 30 chr12 27679764 27679830 -116106625 + GA-rich Low_complexity Low_complexity 4 67 0 776 201 43 5 chr12 27682535 27682719 -116103736 + MER20 DNA MER1_type 1 191 -28 1246 153 30 0 chr12 27683736 27683939 -116102516 + MER2 DNA MER2_type 2 210 -135 353 323 19 37 chr12 27684171 27684332 -116102123 - MIR SINE MIR -46 216 59 2687 153 91 6 chr12 27684395 27684925 -116101530 + MER90 LTR ERV1 1 575 0 1876 126 59 0 chr12 27687842 27688163 -116098292 + AluSx SINE Alu 1 337 0 790 227 34 17 chr12 27688612 27688892 -116097563 + L1ME2 LINE L1 5722 6010 -154 280 347 32 8 chr12 27689651 27689775 -116096680 + MIR3 SINE MIR 31 157 -51 21 0 0 0 chr12 27690230 27690251 -116096204 + AT_rich Low_complexity Low_complexity 1 21 0 276 327 88 54 chr12 27690281 27690578 -116095877 - L2 LINE L2 -2 3311 3005 440 286 83 26 chr12 27690701 27690893 -116095562 - MIR SINE MIR -34 228 26 2186 88 0 17 chr12 27692738 27693033 -116093422 - AluSx SINE Alu 0 312 23 240 359 58 29 chr12 27693631 27693734 -116092721 + L2 LINE L2 3150 3255 -17 779 218 23 17 chr12 27693756 27693930 -116092525 - MER20 DNA MER1_type 0 219 45 185 392 10 10 chr12 27693957 27694054 -116092401 + MIR3 SINE MIR 60 156 -52 411 254 9 35 chr12 27694079 27694193 -116092262 - L2 LINE L2 0 3272 3162 398 337 101 0 chr12 27694984 27695162 -116091293 - MIR SINE MIR -10 252 57 22 0 0 0 chr12 27695276 27695298 -116091157 + AT_rich Low_complexity Low_complexity 1 22 0 584 141 39 47 chr12 27696467 27696595 -116089860 + MER3 DNA MER1_type 82 208 -1 212 281 82 89 chr12 27697426 27697561 -116088894 + L2 LINE L2 3138 3271 -1 1976 113 18 7 chr12 27697842 27698145 -116088310 - AluSq SINE Alu 0 306 1 6831 121 3 8 chr12 27698170 27699228 -116087227 + L1MA3 LINE L1 5254 6305 0 1618 159 62 0 chr12 27700272 27700548 -116085907 + AluSx SINE Alu 1 293 -19 303 270 131 36 chr12 27700574 27700711 -116085744 - MIR SINE MIR -22 240 91 484 276 196 18 chr12 27701911 27702186 -116084269 - L2 LINE L2 -23 3290 2967 330 291 145 0 chr12 27702417 27702534 -116083921 + MIR SINE MIR 56 189 -73 369 0 0 0 chr12 27702950 27702991 -116083464 + (CA)n Simple_repeat Simple_repeat 2 42 0 534 255 12 43 chr12 27703069 27703230 -116083225 + MER20B DNA MER1_type 1 156 -627 23 0 0 0 chr12 27704089 27704112 -116082343 + AT_rich Low_complexity Low_complexity 1 23 0 777 193 82 30 chr12 27704739 27704972 -116081483 + MER20B DNA MER1_type 539 783 0 258 291 8 30 chr12 27707875 27708009 -116078446 + L1MC4 LINE L1 5825 5955 -1853 207 0 0 0 chr12 27708388 27708411 -116078044 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1336 117 44 0 chr12 27708418 27708623 -116077832 - L1PA8A LINE L1 -27 6104 5891 303 280 32 11 chr12 27708834 27708927 -116077528 + L1MC4 LINE L1 6606 6700 -1342 2029 125 20 14 chr12 27708928 27709223 -116077232 - AluSx SINE Alu -15 297 1 1419 46 0 0 chr12 27709923 27710097 -116076358 - L1PA4 LINE L1 -5 6150 5977 600 161 0 0 chr12 27712103 27712196 -116074259 - FLAM_A SINE Alu -16 126 34 246 331 25 8 chr12 27716159 27716280 -116070175 - L3 LINE CR1 -4 1573 1451 1124 147 0 0 chr12 27719220 27719410 -116067045 - L1PA13 LINE L1 -853 5293 5104 * 6238 81 14 7 chr12 27719408 27720281 -116066174 + L1PA13 LINE L1 5274 6152 -11 189 107 0 0 chr12 27720337 27720365 -116066090 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 1571 177 21 25 chr12 27721830 27722113 -116064342 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr12 27722124 27722149 -116064306 + AT_rich Low_complexity Low_complexity 1 25 0 271 283 0 40 chr12 27722851 27722950 -116063505 - MIR SINE MIR -51 211 117 293 262 131 35 chr12 27723048 27723193 -116063262 - L3 LINE CR1 -206 1371 1213 2097 109 61 0 chr12 27723365 27723659 -116062796 + AluSx SINE Alu 1 312 0 269 274 38 0 chr12 27724263 27724369 -116062086 + (TA)n Simple_repeat Simple_repeat 1 110 0 180 341 165 18 chr12 27724402 27724566 -116061889 - MIR SINE MIR -57 205 18 2287 112 0 3 chr12 27725312 27725617 -116060838 - AluSq SINE Alu -9 304 1 231 210 48 0 chr12 27725627 27725689 -116060766 - MER112 DNA MER1_type -48 212 148 264 214 53 0 chr12 27725690 27725821 -116060634 + GA-rich Low_complexity Low_complexity 3 140 0 332 209 52 134 chr12 27725825 27725997 -116060458 - MER112 DNA MER1_type -99 161 4 607 319 168 53 chr12 27726607 27726882 -116059573 + L3 LINE CR1 649 891 -686 569 191 23 15 chr12 27726882 27727013 -116059442 - MER94 DNA DNA 0 134 3 607 319 168 53 chr12 27727013 27727522 -116058933 + L3 LINE CR1 891 1523 -54 2178 114 13 0 chr12 27727562 27727868 -116058587 - AluSg SINE Alu 0 310 1 215 59 0 29 chr12 27728320 27728354 -116058101 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 324 116 0 chr12 27728366 27728582 -116057873 - MIR SINE MIR -10 252 12 3355 209 71 20 chr12 27729235 27730122 -116056333 + L1ME1 LINE L1 5233 6161 -5 660 218 63 63 chr12 27730502 27730754 -116055701 + L1MC5 LINE L1 6787 7038 -923 216 67 0 0 chr12 27731987 27732017 -116054438 + (TG)n Simple_repeat Simple_repeat 1 30 0 1016 210 149 86 chr12 27732433 27732697 -116053758 + L1ME3 LINE L1 5618 5923 -239 2405 143 56 23 chr12 27732697 27732848 -116053607 + L1MB7 LINE L1 5669 5814 -370 2204 108 7 0 chr12 27732848 27733144 -116053311 + AluSx SINE Alu 1 298 -14 2405 143 56 23 chr12 27733144 27733476 -116052979 + L1MB7 LINE L1 5814 6168 -16 1016 210 149 86 chr12 27733476 27733653 -116052802 + L1ME3 LINE L1 5923 6087 -75 213 235 0 0 chr12 27733654 27733705 -116052750 + (TA)n Simple_repeat Simple_repeat 2 52 0 200 333 31 10 chr12 27733785 27733881 -116052574 + MIR SINE MIR 151 248 -14 180 267 44 0 chr12 27733873 27733918 -116052537 + L2 LINE L2 2406 2452 -862 * 2318 70 7 0 chr12 27733926 27734210 -116052245 + AluSp SINE Alu 1 306 0 181 0 0 0 chr12 27734210 27734230 -116052225 + (CAAAA)n Simple_repeat Simple_repeat 2 170 0 1244 275 51 34 chr12 27734230 27734863 -116051592 + L2 LINE L2 2488 3148 -165 213 176 0 0 chr12 27734863 27734897 -116051558 + MIR SINE MIR 218 251 -11 293 180 0 0 chr12 27734897 27734913 -116051542 + L2 LINE L2 3263 3312 -1 294 29 0 0 chr12 27736507 27736542 -116049913 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 27737138 27737165 -116049290 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 83 28 0 chr12 27737505 27737541 -116048914 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 292 232 14 0 chr12 27737732 27737801 -116048654 - MER116 DNA Mariner -7 73 4 2259 127 0 0 chr12 27738366 27738674 -116047781 - AluSx SINE Alu -4 308 1 530 125 0 0 chr12 27738742 27738822 -116047633 - MADE1 DNA Mariner 0 80 1 289 305 48 0 chr12 27740858 27740963 -116045492 + MER94 DNA DNA 17 126 -8 350 239 145 14 chr12 27741154 27741292 -116045163 - MIR SINE MIR -31 231 76 251 245 98 37 chr12 27741432 27741595 -116044860 + Charlie7 DNA MER1_type 2434 2606 -6 353 95 14 40 chr12 27741596 27741670 -116044785 + L1PA13 LINE L1 6090 6161 -2 2261 89 7 0 chr12 27741903 27742195 -116044260 + AluSg SINE Alu 1 294 -16 228 336 17 17 chr12 27742404 27742520 -116043935 - L3b LINE CR1 -166 1417 1302 4191 73 11 0 chr12 27742557 27743105 -116043350 + MER41A LTR ERV1 1 554 0 293 105 342 0 chr12 27743191 27743267 -116043188 + MER41A-int LTR ERV1 1 102 -7654 3943 113 17 30 chr12 27743277 27743908 -116042547 + MER41A-int LTR ERV1 1 623 -5323 * 12129 113 27 25 chr12 27743894 27747105 -116039350 + MER41A-int LTR ERV1 1080 5944 -2 3858 91 27 24 chr12 27747105 27747531 -116038924 + MER41A LTR ERV1 1 431 -123 2230 123 0 0 chr12 27747531 27747831 -116038624 - AluSx SINE Alu -12 300 1 3858 91 27 24 chr12 27747831 27747956 -116038499 + MER41A LTR ERV1 431 554 0 390 208 0 0 chr12 27747958 27748030 -116038425 + Tigger5 DNA MER2_type 2252 2323 0 416 339 0 0 chr12 27749321 27749433 -116037022 + L2 LINE L2 3161 3272 0 1109 186 88 47 chr12 27750248 27750566 -116035889 + MER2 DNA MER2_type 2 332 -13 386 297 47 47 chr12 27750624 27750816 -116035639 - MIR SINE MIR -27 235 44 813 196 22 16 chr12 27750868 27751052 -116035403 + MER105 DNA DNA 18 202 -2 257 196 0 0 chr12 27751156 27751202 -116035253 - Charlie4 DNA MER1_type -37 1924 1879 2530 234 40 39 chr12 27751230 27751831 -116034624 + L1M4 LINE L1 1464 2063 -5044 1735 179 3 14 chr12 27751831 27752122 -116034333 + AluJo SINE Alu 5 292 -20 2530 234 40 39 chr12 27752122 27753115 -116033340 + L1M4 LINE L1 2063 2929 -4178 245 278 0 0 chr12 27753233 27753305 -116033150 + L1M4 LINE L1 2823 2894 -4214 1019 167 56 35 chr12 27753308 27753596 -116032859 + L1MA9 LINE L1 6015 6308 -4 207 0 0 0 chr12 27753620 27753643 -116032812 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 281 226 0 0 chr12 27753690 27753743 -116032712 - Charlie4 DNA MER1_type -1869 92 40 2082 230 5 24 chr12 27754252 27754870 -116031585 + L1M4 LINE L1 5684 6289 -817 518 42 0 14 chr12 27754873 27754944 -116031511 + L1PA7 LINE L1 6082 6151 -3 302 200 0 5 chr12 27755018 27755107 -116031348 + L1M LINE L1 6262 6348 -945 276 294 91 16 chr12 27755741 27755928 -116030527 - L1ME LINE L1 -548 5573 5373 4076 188 32 4 chr12 27755945 27757108 -116029347 - L1MB7 LINE L1 -9 6175 4980 460 273 117 43 chr12 27757776 27758058 -116028397 - L1ME4a LINE L1 -2 6119 5817 661 73 0 91 chr12 27758434 27758544 -116027911 + L1PA7 LINE L1 6030 6129 -25 * 1565 35 0 0 chr12 27758540 27758739 -116027716 + L1HS LINE L1 5953 6151 -4 52 0 0 0 chr12 27758739 27758791 -116027664 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr12 27758843 27758864 -116027591 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr12 27758890 27758917 -116027538 + (A)n Simple_repeat Simple_repeat 1 27 0 439 81 0 0 chr12 27758946 27759008 -116027447 - Charlie1 DNA MER1_type -1 2760 2699 288 0 0 0 chr12 27759314 27759346 -116027109 + (CA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr12 27759986 27760012 -116026443 + AT_rich Low_complexity Low_complexity 1 26 0 484 231 4 40 chr12 27760821 27760957 -116025498 + MIR SINE MIR 14 145 -63 230 220 144 42 chr12 27760958 27761076 -116025379 + MLT1J LTR MaLR 1 130 -381 958 259 88 27 chr12 27761092 27761467 -116024988 - MLT1C LTR MaLR -2 465 68 229 347 0 31 chr12 27761624 27761722 -116024733 + MLT1J1 LTR MaLR 189 283 -163 * 243 301 58 19 chr12 27761713 27761816 -116024639 + MLT1J LTR MaLR 378 484 -27 2339 87 3 0 chr12 27761834 27762132 -116024323 - AluY SINE Alu -12 299 1 432 205 27 18 chr12 27762206 27762318 -116024137 + MIR SINE MIR 147 259 -3 475 81 106 0 chr12 27762706 27762866 -116023589 + (TA)n Simple_repeat Simple_repeat 2 178 0 180 324 0 0 chr12 27762866 27762937 -116023518 + L2 LINE L2 3146 3216 -97 2635 98 0 0 chr12 27763056 27763423 -116023032 - L1PA8 LINE L1 0 6172 5806 252 0 0 0 chr12 27764302 27764330 -116022125 + (T)n Simple_repeat Simple_repeat 1 28 0 829 179 0 0 chr12 27764678 27764801 -116021654 + AluJb SINE Alu 3 125 -187 417 347 0 0 chr12 27764831 27764955 -116021500 - L2 LINE L2 0 3272 3149 499 279 94 16 chr12 27765216 27765470 -116020985 + LTR16C LTR ERVL 209 482 -9 227 291 50 101 chr12 27765567 27765825 -116020630 + L3 LINE CR1 689 933 -644 2947 106 66 0 chr12 27765866 27766250 -116020205 + MLT2A2 LTR ERVL 1 417 -36 198 103 0 0 chr12 27766250 27766279 -116020176 + (TA)n Simple_repeat Simple_repeat 2 30 0 2947 106 66 0 chr12 27766279 27766319 -116020136 + MLT2A2 LTR ERVL 417 453 0 42444 71 7 2 chr12 27766319 27771950 -116014505 + HERVL-A2 LTR ERVL 1 5654 0 2335 58 130 30 chr12 27771950 27772311 -116014144 + MLT2A2 LTR ERVL 1 397 -56 393 22 0 0 chr12 27772312 27772358 -116014097 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 22 0 0 chr12 27772357 27772402 -116014053 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 234 84 0 229 chr12 27772436 27772519 -116013936 + MLT2A1 LTR ERVL 386 440 -4 352 348 23 63 chr12 27772558 27772860 -116013595 + L3 LINE CR1 1050 1339 -238 613 321 75 8 chr12 27772872 27773112 -116013343 + MIR SINE MIR 1 256 -6 1142 229 28 31 chr12 27774006 27774359 -116012096 + L1MD3 LINE L1 7479 7830 -165 514 260 74 1 chr12 27774356 27774568 -116011887 + L1MD3 LINE L1 7562 7974 0 * 957 9 0 0 chr12 27774575 27774685 -116011770 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 4941 60 14 130 chr12 27774691 27775615 -116010840 + SVA Other Other 50 866 -520 6064 68 48 40 chr12 27775644 27776789 -116009666 + SVA Other Other 433 1386 0 217 306 31 20 chr12 27776989 27777087 -116009368 + MIR3 SINE MIR 102 200 -8 2413 77 10 0 chr12 27778242 27778541 -116007914 - AluSp SINE Alu -11 302 1 210 307 11 57 chr12 27778674 27778762 -116007693 - MIR SINE MIR -84 124 41 417 277 21 25 chr12 27778920 27779162 -116007293 - L1MEd LINE L1 -4908 1211 971 31 0 0 0 chr12 27779810 27779841 -116006614 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 27780906 27780938 -116005517 + (CA)n Simple_repeat Simple_repeat 2 33 0 477 291 158 0 chr12 27781121 27781279 -116005176 + MIR SINE MIR 46 228 -34 293 286 12 12 chr12 27781311 27781395 -116005060 + L2 LINE L2 3188 3271 -1 325 287 148 50 chr12 27782660 27782862 -116003593 - L3 LINE CR1 -1 1576 1355 447 290 35 41 chr12 27782865 27783034 -116003421 + L2 LINE L2 3146 3313 0 795 328 64 5 chr12 27783114 27783504 -116002951 - L3 LINE CR1 -346 1231 819 225 239 130 109 chr12 27783639 27783777 -116002678 + MER5B DNA MER1_type 1 141 -37 298 350 17 8 chr12 27783904 27784021 -116002434 + L2 LINE L2 3154 3271 -1 208 333 232 17 chr12 27784983 27785160 -116001295 - MIR SINE MIR 0 262 48 277 284 85 10 chr12 27785479 27785798 -116000657 + L1P LINE L1 4870 5205 -941 1984 138 3 3 chr12 27786023 27786319 -116000136 + AluSx SINE Alu 3 298 -14 218 393 86 26 chr12 27786348 27786465 -115999990 + MER91A DNA MER1_type 72 195 -1 203 315 19 0 chr12 27786465 27786510 -115999945 + MER91A DNA MER1_type 144 189 -1 709 263 70 76 chr12 27786555 27787067 -115999388 + L1ME3A LINE L1 5257 5765 -405 2169 104 0 24 chr12 27787067 27787365 -115999090 + AluSx SINE Alu 1 291 -21 709 263 70 76 chr12 27787365 27787551 -115998904 + L1ME3A LINE L1 5765 5951 -219 2394 104 0 0 chr12 27788002 27788310 -115998145 - AluSq SINE Alu -4 309 2 201 175 228 0 chr12 27788564 27788621 -115997834 + MIR SINE MIR 76 145 -117 21 57 0 0 chr12 27789291 27789326 -115997129 + AT_rich Low_complexity Low_complexity 1 35 0 715 185 19 52 chr12 27790315 27790526 -115995929 - L1ME LINE L1 -5809 261 58 685 266 134 75 chr12 27790583 27790801 -115995654 + L1MEd LINE L1 662 866 -5253 732 177 0 16 chr12 27790801 27790925 -115995530 + FLAM_A SINE Alu 1 122 -11 685 266 134 75 chr12 27790925 27791131 -115995324 + L1MEd LINE L1 866 1111 -5008 405 245 82 0 chr12 27792068 27792166 -115994289 + MIR SINE MIR 37 142 -120 1685 187 6 19 chr12 27792337 27792653 -115993802 + AluJo SINE Alu 1 312 0 752 176 0 0 chr12 27792688 27792807 -115993648 + FLAM_C SINE Alu 4 122 -21 474 146 0 0 chr12 27792866 27792976 -115993479 + (TA)n Simple_repeat Simple_repeat 2 111 0 344 252 154 24 chr12 27792979 27793316 -115993139 + L1MEd LINE L1 2317 2697 -3432 185 233 23 0 chr12 27793319 27793362 -115993093 - L3 LINE CR1 -377 1200 1157 207 310 40 30 chr12 27793363 27793463 -115992992 - L3 LINE CR1 -567 1010 910 338 336 42 0 chr12 27793584 27793703 -115992752 + L2 LINE L2 3145 3268 -4 520 101 0 0 chr12 27794261 27794350 -115992105 + L1MA4 LINE L1 6211 6299 -1 1877 149 3 0 chr12 27795039 27795354 -115991101 - AluJb SINE Alu 0 316 1 21 57 0 0 chr12 27795460 27795495 -115990960 + AT_rich Low_complexity Low_complexity 1 35 0 413 237 141 0 chr12 27795517 27795652 -115990803 + MIR SINE MIR 65 218 -44 285 213 16 0 chr12 27795855 27795916 -115990539 - L2 LINE L2 0 3313 3252 983 295 43 43 chr12 27796004 27796393 -115990062 - L2 LINE L2 -335 2978 2592 1056 168 6 0 chr12 27796986 27797159 -115989296 - AluJo SINE Alu -138 174 1 1648 123 0 0 chr12 27797307 27797526 -115988929 + AluSg/x SINE Alu 80 298 -12 490 273 83 37 chr12 27798426 27798642 -115987813 + MLT1K LTR MaLR 339 564 -24 591 205 79 0 chr12 27798760 27798887 -115987568 - L2 LINE L2 0 3313 3177 852 154 0 0 chr12 27801155 27801285 -115985170 - FLAM_C SINE Alu -3 130 1 216 0 0 0 chr12 27801356 27801380 -115985075 + (A)n Simple_repeat Simple_repeat 1 24 0 1321 120 0 5 chr12 27801652 27801844 -115984611 + AluY SINE Alu 5 195 -116 821 71 0 0 chr12 27801871 27801984 -115984471 + AluY SINE Alu 147 259 -52 1439 100 0 9 chr12 27801986 27802196 -115984259 + AluY SINE Alu 97 304 -7 2215 105 7 3 chr12 27802201 27802506 -115983949 + AluSx SINE Alu 1 306 -6 2391 58 0 7 chr12 27802615 27802908 -115983547 + AluY SINE Alu 1 291 -20 23 54 0 0 chr12 27803409 27803446 -115983009 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 27803554 27803591 -115982864 + AT_rich Low_complexity Low_complexity 1 37 0 261 253 10 30 chr12 27804578 27804677 -115981778 + MLT1K LTR MaLR 490 586 -2 31 0 0 0 chr12 27804751 27804782 -115981673 + AT_rich Low_complexity Low_complexity 1 31 0 246 252 26 113 chr12 27804803 27804954 -115981501 + L3b LINE CR1 1268 1405 -178 1901 145 28 3 chr12 27805382 27805665 -115980790 + AluSx SINE Alu 7 296 -16 2469 66 3 0 chr12 27806132 27806435 -115980020 + AluY SINE Alu 1 304 -7 463 304 84 14 chr12 27806601 27806815 -115979640 - MIR SINE MIR -27 235 7 437 309 33 132 chr12 27806823 27807251 -115979204 - L2 LINE L2 -1 3271 2895 2073 78 0 7 chr12 27807251 27807522 -115978933 + AluY SINE Alu 35 303 -8 437 309 33 132 chr12 27807522 27807578 -115978877 - L2 LINE L2 -377 2895 2835 309 229 14 14 chr12 27807901 27807971 -115978484 + L2 LINE L2 2689 2758 -556 538 258 76 0 chr12 27808243 27808375 -115978080 - MLT1J LTR MaLR -369 142 1 2086 116 0 23 chr12 27810104 27810406 -115976049 + AluSx SINE Alu 1 295 -17 386 211 108 69 chr12 27810676 27810880 -115975575 - L2 LINE L2 -8 3305 3094 2766 175 19 21 chr12 27810893 27811475 -115974980 + L1MB4 LINE L1 5594 6174 -6 187 259 37 0 chr12 27813348 27813402 -115973053 + L2 LINE L2 2995 3050 -222 366 352 31 8 chr12 27813567 27813695 -115972760 - L2 LINE L2 -13 3259 3129 237 245 0 0 chr12 27813843 27813896 -115972559 + L2 LINE L2 3261 3313 0 1955 132 33 3 chr12 27814319 27814653 -115971802 - MER47A DNA MER2_type -3 363 20 293 252 28 63 chr12 27814964 27815107 -115971348 - L1ME4a LINE L1 -4 6117 5980 2017 150 0 10 chr12 27815269 27815575 -115970880 + AluSx SINE Alu 1 303 -9 540 208 72 16 chr12 27816438 27816563 -115969892 + FLAM_C SINE Alu 1 132 -1 239 214 0 0 chr12 27817053 27817095 -115969360 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr12 27819535 27819560 -115966895 + AT_rich Low_complexity Low_complexity 1 25 0 1176 161 0 50 chr12 27819659 27819877 -115966578 - AluJb SINE Alu -21 291 85 2326 71 20 7 chr12 27820219 27820516 -115965939 - AluSc SINE Alu -8 301 1 274 322 141 28 chr12 27820865 27821042 -115965413 - MIR3 SINE MIR -2 206 10 344 154 51 26 chr12 27821411 27821489 -115964966 + Tigger7 DNA MER2_type 1 80 -470 2265 103 0 7 chr12 27821491 27821781 -115964674 - AluSx SINE Alu -24 288 1 2185 98 0 0 chr12 27821984 27822269 -115964186 + AluSx SINE Alu 1 285 -27 369 0 0 0 chr12 27822269 27822310 -115964145 + (CA)n Simple_repeat Simple_repeat 2 42 0 675 222 105 6 chr12 27822761 27822923 -115963532 + MER45A DNA AcHobo 1 178 0 1423 169 89 30 chr12 27823099 27823525 -115962930 + pTR5 LTR ERV1 743 1193 -1245 525 248 9 0 chr12 27823897 27824006 -115962449 - MER5A DNA MER1_type 0 189 80 1229 239 112 73 chr12 27824110 27824562 -115961893 - L1MC4 LINE L1 0 8042 7554 2333 109 3 0 chr12 27824562 27824873 -115961582 + AluSx SINE Alu 1 312 0 1229 239 112 73 chr12 27824873 27825089 -115961366 - L1MC4 LINE L1 -488 7554 7348 219 139 0 0 chr12 27825405 27825441 -115961014 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr12 27825718 27825741 -115960714 + AT_rich Low_complexity Low_complexity 1 23 0 1559 179 62 0 chr12 27826016 27826289 -115960166 + AluJb SINE Alu 1 290 -22 683 293 60 9 chr12 27826409 27826641 -115959814 + MIR SINE MIR 4 247 -15 877 218 6 6 chr12 27826650 27826824 -115959631 - FRAM SINE Alu -3 173 1 1953 141 7 0 chr12 27827044 27827343 -115959112 - AluSx SINE Alu 0 312 12 1560 196 10 10 chr12 27828156 27828447 -115958008 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr12 27828447 27828468 -115957987 + AT_rich Low_complexity Low_complexity 1 21 0 311 173 53 0 chr12 27828691 27828766 -115957689 + L1MB3 LINE L1 6089 6167 -16 651 132 9 0 chr12 27829227 27829333 -115957122 - AluSg/x SINE Alu 0 312 206 1397 80 16 21 chr12 27829438 27829625 -115956830 - AluSq SINE Alu -127 186 1 27 29 0 0 chr12 27830418 27830452 -115956003 + AT_rich Low_complexity Low_complexity 1 34 0 785 331 156 24 chr12 27830499 27830553 -115955902 - L3 LINE CR1 -578 999 954 2323 138 121 30 chr12 27830553 27831016 -115955439 + MLT1D LTR MaLR 1 505 0 785 331 156 24 chr12 27831016 27831393 -115955062 - L3 LINE CR1 -623 954 628 2230 120 0 3 chr12 27831393 27831694 -115954761 - AluSx SINE Alu -7 305 6 785 331 156 24 chr12 27831694 27831984 -115954471 - L3 LINE CR1 -949 628 181 1617 197 11 0 chr12 27832055 27832339 -115954116 + AluJb SINE Alu 1 287 -25 27 29 0 0 chr12 27832349 27832383 -115954072 + AT_rich Low_complexity Low_complexity 1 34 0 535 267 47 7 chr12 27832718 27832868 -115953587 - MIR SINE MIR -64 198 43 255 259 9 28 chr12 27832952 27833060 -115953395 - L1MC5 LINE L1 -48 7913 7808 2408 225 73 42 chr12 27833084 27833348 -115953107 - L1ME1 LINE L1 -23 6143 5888 2299 111 3 0 chr12 27833348 27833655 -115952800 - AluSx SINE Alu -4 308 1 2408 225 73 42 chr12 27833655 27834206 -115952249 - L1ME1 LINE L1 -278 5888 5296 2025 112 0 0 chr12 27834206 27834482 -115951973 - AluSx SINE Alu -36 276 1 2408 225 73 42 chr12 27834482 27834679 -115951776 - L1ME1 LINE L1 -870 5296 5106 253 318 15 50 chr12 27834822 27834837 -115951618 - L1MDa LINE L1 -6329 211 197 1981 136 0 48 chr12 27834837 27835147 -115951308 + AluSx SINE Alu 3 297 -15 253 318 15 50 chr12 27835147 27835329 -115951126 - L1MDa LINE L1 -6343 197 21 2342 105 0 6 chr12 27835988 27836301 -115950154 - AluSx SINE Alu -1 311 1 833 231 53 25 chr12 27836308 27836551 -115949904 - MER112 DNA MER1_type -8 252 3 530 250 38 87 chr12 27836984 27837108 -115949347 + MIR SINE MIR 12 141 -121 409 91 13 13 chr12 27837108 27837185 -115949270 + (TA)n Simple_repeat Simple_repeat 2 78 0 2089 129 7 20 chr12 27837185 27837487 -115948968 - AluJo SINE Alu -14 298 1 530 250 38 87 chr12 27837487 27837625 -115948830 + MIR SINE MIR 139 262 0 34 65 0 0 chr12 27837861 27837923 -115948532 + AT_rich Low_complexity Low_complexity 1 62 0 1073 168 0 0 chr12 27838452 27838619 -115947836 - FRAM SINE Alu -10 166 1 1646 184 0 32 chr12 27838676 27838985 -115947470 + AluJo SINE Alu 1 299 -13 27 92 0 0 chr12 27839010 27839086 -115947369 + AT_rich Low_complexity Low_complexity 1 76 0 5510 125 24 50 chr12 27839623 27839693 -115946762 - MER49 LTR ERV1 0 923 853 7783 41 3 1 chr12 27839693 27840579 -115945876 + L1PA7 LINE L1 5254 6141 -13 207 0 0 0 chr12 27840583 27840606 -115945849 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5510 125 24 50 chr12 27840606 27841384 -115945071 - MER49 LTR ERV1 -73 850 93 1654 179 11 0 chr12 27841384 27841689 -115944766 - AluJo SINE Alu 0 308 1 5510 125 24 50 chr12 27841689 27841780 -115944675 - MER49 LTR ERV1 -830 93 1 400 273 83 0 chr12 27841984 27842105 -115944350 + MIR SINE MIR 2 132 -130 766 264 87 28 chr12 27842134 27842559 -115943896 + LTR33 LTR ERVL 54 503 -18 240 250 29 44 chr12 27842576 27842644 -115943811 + MIR SINE MIR 167 233 -29 665 300 25 17 chr12 27843280 27843410 -115943045 + MIR SINE MIR 12 146 -116 1935 123 49 0 chr12 27843410 27843695 -115942760 + AluJo SINE Alu 1 299 -13 665 300 25 17 chr12 27843695 27843801 -115942654 + MIR SINE MIR 146 250 -12 282 116 0 0 chr12 27843948 27843991 -115942464 + (TA)n Simple_repeat Simple_repeat 2 44 0 799 214 48 19 chr12 27844084 27844290 -115942165 + MIR SINE MIR 1 212 -50 849 217 17 0 chr12 27844421 27844596 -115941859 + L1ME2 LINE L1 5986 6163 -1 325 284 69 9 chr12 27845106 27845222 -115941233 - MIR SINE MIR -73 189 67 330 295 43 0 chr12 27847124 27847263 -115939192 - MER103 DNA DNA -5 161 17 1962 133 27 0 chr12 27847672 27847966 -115938489 - AluSx SINE Alu -10 302 1 894 208 6 11 chr12 27848020 27848203 -115938252 + Tigger1 DNA MER2_type 1 182 -2236 665 173 27 0 chr12 27848215 27848325 -115938130 - FLAM_C SINE Alu -21 122 10 9394 118 3 30 chr12 27848333 27849107 -115937348 + Tigger1 DNA MER2_type 177 894 -1524 2308 100 0 0 chr12 27849107 27849407 -115937048 + AluSx SINE Alu 1 300 -12 9394 118 3 30 chr12 27849407 27850080 -115936375 + Tigger1 DNA MER2_type 894 1584 -834 848 150 8 0 chr12 27850081 27850208 -115936247 - AluSg/x SINE Alu -11 299 172 399 301 59 59 chr12 27851783 27851969 -115934486 + L2 LINE L2 3068 3253 -19 222 105 0 0 chr12 27851970 27852008 -115934447 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2029 116 7 7 chr12 27852008 27852293 -115934162 - AluSp SINE Alu -28 285 1 3114 79 5 12 chr12 27852551 27852958 -115933497 - L1PA8 LINE L1 -1 6171 5768 264 250 125 25 chr12 27853737 27853857 -115932598 + L1MEd LINE L1 1 132 -5987 1082 146 0 6 chr12 27854066 27854259 -115932196 + AluSg/x SINE Alu 119 310 0 385 169 0 0 chr12 27854259 27854324 -115932131 + MLT1A1 LTR MaLR 301 365 0 2448 68 0 3 chr12 27854647 27854943 -115931512 + AluY SINE Alu 1 295 -16 533 233 43 0 chr12 27855215 27855331 -115931124 + L2 LINE L2 3192 3312 -1 396 0 0 0 chr12 27855695 27855739 -115930716 + (ATG)n Simple_repeat Simple_repeat 2 45 0 552 148 9 35 chr12 27855808 27855923 -115930532 - LTR41 LTR ERVL -2 771 660 1321 148 39 0 chr12 27855926 27856129 -115930326 + AluJb SINE Alu 1 211 -101 709 180 23 8 chr12 27856138 27856447 -115930008 + AluJb SINE Alu 166 476 0 2571 52 0 0 chr12 27856501 27856806 -115929649 + AluY SINE Alu 1 305 -6 337 292 183 0 chr12 27857208 27857345 -115929110 - LTR41 LTR ERVL -611 162 1 2415 97 0 0 chr12 27857847 27858147 -115928308 + AluSx SINE Alu 1 300 -12 2372 62 0 20 chr12 27859982 27860287 -115926168 + AluY SINE Alu 1 299 -12 1033 161 6 0 chr12 27860537 27860699 -115925756 - FRAM SINE Alu -13 163 1 340 82 311 0 chr12 27860716 27860777 -115925678 + MADE1 DNA Mariner 1 80 0 1792 172 33 7 chr12 27860838 27861141 -115925314 - AluJb SINE Alu -1 311 1 319 163 0 17 chr12 27861379 27861532 -115924923 + AluJb SINE Alu 87 291 -11 300 282 0 0 chr12 27861585 27861656 -115924799 - L2 LINE L2 -1 3312 3242 23 0 0 0 chr12 27861744 27861767 -115924688 + AT_rich Low_complexity Low_complexity 1 23 0 1209 163 24 10 chr12 27861855 27862064 -115924391 - AluJb SINE Alu -15 297 86 1158 122 14 75 chr12 27862648 27862862 -115923593 + AluJo SINE Alu 86 286 -26 249 33 0 0 chr12 27862862 27862892 -115923563 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr12 27864362 27864384 -115922071 + AT_rich Low_complexity Low_complexity 1 22 0 2081 134 0 0 chr12 27864913 27865216 -115921239 - AluSx SINE Alu 0 303 1 21 71 0 0 chr12 27865230 27865272 -115921183 + AT_rich Low_complexity Low_complexity 1 42 0 617 195 71 47 chr12 27865906 27866075 -115920380 - MER104 DNA MER2_type -4 176 4 839 174 12 25 chr12 27867196 27867357 -115919098 + MER5A DNA MER1_type 5 163 -26 2662 209 276 91 chr12 27867434 27867832 -115918623 + L2 LINE L2 525 848 -2466 1567 203 3 10 chr12 27867832 27868127 -115918328 - AluJo SINE Alu -19 293 1 2662 209 276 91 chr12 27868127 27869253 -115917202 + L2 LINE L2 848 2332 -982 823 318 55 40 chr12 27869284 27869737 -115916718 - L2 LINE L2 -616 2698 2239 539 260 0 8 chr12 27869737 27869864 -115916591 - L2 LINE L2 -1336 1978 1853 234 266 147 63 chr12 27869865 27870117 -115916338 - L2 LINE L2 -1747 1567 1295 421 315 119 8 chr12 27870776 27871011 -115915444 - L3 LINE CR1 -126 1451 1191 387 95 16 0 chr12 27871186 27871249 -115915206 + Alu SINE Alu 239 302 0 2479 45 3 36 chr12 27871905 27872214 -115914241 + AluY SINE Alu 1 299 -12 189 74 0 0 chr12 27872424 27872451 -115914004 + (GA)n Simple_repeat Simple_repeat 2 28 0 186 375 14 0 chr12 27874435 27874507 -115911948 + L2 LINE L2 1852 1924 -1390 1563 238 45 11 chr12 27875770 27876149 -115910306 + MSTD LTR MaLR 1 392 -4 2541 75 0 0 chr12 27876291 27876599 -115909856 + AluY SINE Alu 1 308 -3 23794 94 9 3 chr12 27876701 27880501 -115905954 + L1P3 LINE L1 1956 5774 -380 397 278 28 35 chr12 27880847 27880991 -115905464 + MIR3 SINE MIR 14 156 -52 862 243 35 24 chr12 27881207 27881462 -115904993 - MIR SINE MIR -1 261 4 437 123 48 27 chr12 27882061 27882323 -115904132 + (TA)n Simple_repeat Simple_repeat 1 267 0 307 281 98 117 chr12 27883572 27884052 -115902403 - L1M2 LINE L1 -5925 924 454 2271 99 0 0 chr12 27884858 27885152 -115901303 + AluSx SINE Alu 1 294 -18 2373 83 0 7 chr12 27885626 27885927 -115900528 + AluSq SINE Alu 1 299 -14 329 209 55 55 chr12 27886886 27886996 -115899459 - MER115 DNA AcHobo 0 4031 584 226 196 39 0 chr12 27887165 27887216 -115899239 - MER115 DNA AcHobo -633 60 8 1995 132 0 3 chr12 27887779 27888083 -115898372 - AluSq SINE Alu -10 303 1 286 294 147 0 chr12 27890220 27890329 -115896126 - MIR SINE MIR -106 156 32 314 321 79 14 chr12 27890380 27890520 -115895935 + MIR SINE MIR 52 200 -62 385 250 17 57 chr12 27890566 27890742 -115895713 + CT-rich Low_complexity Low_complexity 4 172 0 2123 101 17 14 chr12 27890748 27891044 -115895411 - AluSx SINE Alu -7 305 9 2257 103 0 7 chr12 27891369 27891671 -115894784 + AluSx SINE Alu 1 300 -12 96 53 0 0 chr12 27891799 27891951 -115894504 + AT_rich Low_complexity Low_complexity 1 152 0 254 277 113 92 chr12 27891970 27892111 -115894344 + L2 LINE L2 3129 3272 0 2358 93 0 3 chr12 27893193 27893504 -115892951 + AluSg SINE Alu 1 310 0 483 62 37 25 chr12 27895045 27895126 -115891329 + L1MA5 LINE L1 6217 6298 -2 2046 135 0 0 chr12 27895133 27895429 -115891026 + AluSg SINE Alu 1 296 -14 584 140 59 1 chr12 27895436 27895558 -115890897 + L1MC3 LINE L1 7677 7785 0 645 332 142 38 chr12 27896065 27896181 -115890274 - L2 LINE L2 -181 3091 2988 1618 184 23 23 chr12 27896181 27896490 -115889965 + AluJo SINE Alu 4 312 0 645 332 142 38 chr12 27896490 27897139 -115889316 - L2 LINE L2 -284 2988 2265 1148 61 7 14 chr12 27897139 27897286 -115889169 + AluY SINE Alu 1 146 -165 1334 78 5 11 chr12 27897392 27897583 -115888872 + L1PA7 LINE L1 5964 6153 -1 2480 73 0 0 chr12 27897895 27898197 -115888258 + AluY SINE Alu 1 302 -9 411 206 48 87 chr12 27899245 27899371 -115887084 - MIR3 SINE MIR -3 205 85 1553 237 133 32 chr12 27900698 27901201 -115885254 - MER68 LTR ERV1 -8 554 1 2372 228 60 1 chr12 27901201 27901971 -115884484 + L1ME1 LINE L1 4651 5464 -743 273 279 317 0 chr12 27902159 27902263 -115884192 + L2 LINE L2 3136 3272 0 2231 102 3 0 chr12 27904058 27904365 -115882090 + AluSq SINE Alu 1 308 0 316 291 0 17 chr12 27904377 27904494 -115881961 + L1ME4a LINE L1 5986 6100 -21 23 33 0 0 chr12 27904503 27904533 -115881922 + AT_rich Low_complexity Low_complexity 1 30 0 182 333 0 0 chr12 27905024 27905072 -115881383 + L2 LINE L2 3219 3266 -6 21 71 0 0 chr12 27906170 27906212 -115880243 + AT_rich Low_complexity Low_complexity 1 42 0 245 204 75 32 chr12 27906572 27906665 -115879790 + L1ME1 LINE L1 5505 5601 -743 502 194 56 160 chr12 27906683 27906959 -115879496 + L1ME1 LINE L1 5880 6125 -41 328 223 115 0 chr12 27906994 27907124 -115879331 - L1ME4a LINE L1 -4 6117 5973 300 266 130 39 chr12 27907569 27907696 -115878759 - L1ME4a LINE L1 -171 5950 5795 2171 118 3 0 chr12 27907696 27907992 -115878463 + AluSq SINE Alu 1 297 -16 300 266 130 39 chr12 27907992 27908071 -115878384 - L1ME4a LINE L1 -326 5795 5725 602 98 33 0 chr12 27908090 27908182 -115878273 - AluSg/x SINE Alu -8 304 210 1845 77 3 23 chr12 27909051 27909347 -115877108 + THE1C LTR MaLR 1 375 0 2188 115 3 0 chr12 27909457 27909752 -115876703 - AluSx SINE Alu -16 296 1 22 70 0 0 chr12 27910169 27910212 -115876243 + AT_rich Low_complexity Low_complexity 1 43 0 444 207 96 64 chr12 27910573 27910761 -115875694 + L1MC5 LINE L1 7732 7925 -36 2048 140 0 7 chr12 27910773 27911073 -115875382 + AluSx SINE Alu 2 299 -13 1715 179 0 10 chr12 27911351 27911647 -115874808 - AluSx SINE Alu -16 296 4 2198 162 119 38 chr12 27912046 27912552 -115873903 + MER44D DNA MER2_type 159 705 0 24 0 0 0 chr12 27912738 27912762 -115873693 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr12 27912994 27913048 -115873407 + AT_rich Low_complexity Low_complexity 1 54 0 217 276 0 17 chr12 27913547 27913605 -115872850 - L2 LINE L2 -1 3312 3256 1103 82 0 0 chr12 27914239 27914373 -115872082 - AluSp/q SINE Alu -17 296 163 262 306 174 0 chr12 27914374 27914493 -115871962 - MIR SINE MIR -114 148 9 361 224 0 0 chr12 27914493 27914560 -115871895 + MER5A DNA MER1_type 1 67 -122 860 148 7 7 chr12 27914563 27914698 -115871757 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 27914710 27914732 -115871723 + AT_rich Low_complexity Low_complexity 1 22 0 237 230 13 118 chr12 27914757 27914909 -115871546 + LTR2 LTR ERV1 4 139 -310 848 139 0 36 chr12 27916578 27916715 -115869740 - FLAM_C SINE Alu -1 132 1 360 287 74 9 chr12 27917079 27917187 -115869268 - L2 LINE L2 0 3313 3199 21 36 0 0 chr12 27917740 27917768 -115868687 + AT_rich Low_complexity Low_complexity 1 28 0 518 184 104 75 chr12 27918703 27918904 -115867551 - L1MC4 LINE L1 0 8042 7836 398 241 0 13 chr12 27919040 27919119 -115867336 + MER21B LTR ERV1 13 90 -773 2090 245 113 37 chr12 27919141 27919864 -115866591 + MER21B LTR ERV1 19 796 -67 40 0 0 0 chr12 27920010 27920050 -115866405 + AT_rich Low_complexity Low_complexity 1 40 0 1961 150 0 0 chr12 27920050 27920336 -115866119 - AluJb SINE Alu -22 290 5 1983 213 50 6 chr12 27921376 27921856 -115864599 + L1M4 LINE L1 3668 4168 -1978 1144 196 87 57 chr12 27921864 27922129 -115864326 + AluJo SINE Alu 2 274 -38 413 187 30 15 chr12 27922129 27922263 -115864192 + GA-rich Low_complexity Low_complexity 3 138 0 2462 198 62 2 chr12 27922264 27922875 -115863580 + L1M4 LINE L1 4152 4799 -1347 201 179 36 18 chr12 27923546 27923586 -115862869 + A-rich Low_complexity Low_complexity 4 47 -13 2220 122 0 3 chr12 27923586 27923897 -115862558 + AluSx SINE Alu 1 310 -2 201 179 36 18 chr12 27923897 27923912 -115862543 + A-rich Low_complexity Low_complexity 47 60 0 2390 90 0 0 chr12 27924230 27924531 -115861924 + AluSq SINE Alu 1 301 -12 365 321 46 68 chr12 27924546 27924985 -115861470 + HAL1 LINE L1 91 519 -1988 709 163 0 8 chr12 27925003 27925126 -115861329 + MER3 DNA MER1_type 6 127 -82 657 273 205 30 chr12 27925137 27926466 -115859989 + HAL1 LINE L1 592 2210 -297 1367 122 33 5 chr12 27926492 27926705 -115859750 + AluSg/x SINE Alu 76 294 -18 303 198 173 25 chr12 27926723 27926885 -115859570 + HAL1 LINE L1 2298 2483 -24 281 290 154 88 chr12 27927154 27927652 -115858803 - L2 LINE L2 0 3313 2762 468 272 94 31 chr12 27927902 27928107 -115858348 - MIR SINE MIR -30 232 19 424 252 54 9 chr12 27928497 27928608 -115857847 + MIR SINE MIR 37 152 -110 461 282 0 0 chr12 27928713 27928830 -115857625 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27930408 27930465 -115855990 + (CG)n Simple_repeat Simple_repeat 2 57 0 180 368 80 8 chr12 27931530 27931655 -115854800 + L2 LINE L2 2359 2492 -822 208 311 183 63 chr12 27931900 27932234 -115854221 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27934453 27934478 -115851977 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2129 86 0 0 chr12 27934478 27934745 -115851710 - AluSg SINE Alu -32 278 12 7893 230 74 34 chr12 27935079 27935967 -115850488 - L1MC/D LINE L1 -743 5403 4553 2220 112 0 10 chr12 27935967 27936271 -115850184 + AluSx SINE Alu 1 301 -11 7893 230 74 34 chr12 27936271 27936419 -115850036 - L1MC/D LINE L1 -1593 4553 4412 201 44 22 44 chr12 27936419 27936464 -115849991 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 7893 230 74 34 chr12 27936464 27938003 -115848452 - L1MC/D LINE L1 -1734 4412 2937 2344 90 0 0 chr12 27938003 27938304 -115848151 + AluSq SINE Alu 1 301 -12 7893 230 74 34 chr12 27938304 27938739 -115847716 - L1MC/D LINE L1 -3209 2937 2348 1618 179 10 10 chr12 27938739 27939035 -115847420 - AluJb SINE Alu -16 296 1 7893 230 74 34 chr12 27939035 27939069 -115847386 - L1MC/D LINE L1 -3798 2348 2317 2031 213 86 41 chr12 27939077 27939845 -115846610 - L1MB8 LINE L1 -5 6567 5835 1445 169 123 0 chr12 27939845 27940105 -115846350 - AluJb SINE Alu -10 292 1 2031 213 86 41 chr12 27940105 27941079 -115845376 - L1MB8 LINE L1 -737 5835 1637 530 200 70 17 chr12 27941318 27941433 -115845022 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27941442 27941466 -115844989 + AT_rich Low_complexity Low_complexity 1 24 0 2097 125 14 0 chr12 27941560 27941856 -115844599 - AluSq SINE Alu -13 300 1 2392 88 0 3 chr12 27942008 27942304 -115844151 - AluSq SINE Alu -18 295 1 2539 60 0 16 chr12 27942642 27942958 -115843497 - AluY SINE Alu 0 311 1 281 287 69 0 chr12 27943300 27943401 -115843054 - MER89-int LTR ERV1 -3293 3508 3401 1190 113 17 6 chr12 27943581 27943758 -115842697 - AluSg/x SINE Alu -11 301 123 2017 120 0 0 chr12 27943785 27944051 -115842404 - AluSx SINE Alu -46 266 1 180 0 0 0 chr12 27944519 27944539 -115841916 + (T)n Simple_repeat Simple_repeat 1 20 0 2368 65 0 19 chr12 27945412 27945722 -115840733 + AluY SINE Alu 1 304 -7 4191 148 50 22 chr12 27947755 27948350 -115838105 - L1MB7 LINE L1 -14 6170 5593 1288 111 93 28 chr12 27948350 27948566 -115837889 - MER30 DNA MER1_type 0 230 1 4191 148 50 22 chr12 27948566 27948874 -115837581 - L1MB7 LINE L1 -591 5593 5233 280 85 0 34 chr12 27948874 27948933 -115837522 + (TA)n Simple_repeat Simple_repeat 1 57 0 4191 148 50 22 chr12 27948933 27948953 -115837502 - L1MB7 LINE L1 -951 5233 5215 443 271 128 31 chr12 27949194 27949452 -115837003 + L2 LINE L2 2464 2746 -568 1829 182 0 7 chr12 27950510 27950806 -115835649 + AluJo SINE Alu 1 294 -18 27 0 0 0 chr12 27951598 27951625 -115834830 + AT_rich Low_complexity Low_complexity 1 27 0 2034 115 35 3 chr12 27953896 27954182 -115832273 + AluSq SINE Alu 1 295 -18 738 158 0 55 chr12 27954435 27954600 -115831855 + MER3 DNA MER1_type 6 161 -48 343 346 47 0 chr12 27954982 27955089 -115831366 + L2 LINE L2 3136 3247 -25 21 0 0 0 chr12 27957512 27957533 -115828922 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 27958257 27958286 -115828169 + AT_rich Low_complexity Low_complexity 1 29 0 891 220 53 36 chr12 27959249 27959672 -115826783 + MLT1C LTR MaLR 1 467 0 2154 97 4 4 chr12 27959818 27960096 -115826359 + AluSq SINE Alu 22 299 -14 1834 195 138 8 chr12 27960240 27960733 -115825722 + L2 LINE L2 2043 2599 -715 242 174 0 0 chr12 27960751 27960797 -115825658 + L1ME LINE L1 5727 5772 -349 1603 236 65 11 chr12 27961345 27961803 -115824652 - LTR34 LTR ERV1 -4 695 213 483 348 135 12 chr12 27961877 27962136 -115824319 + L2 LINE L2 2979 3269 -3 2009 118 21 11 chr12 27962175 27962462 -115823993 - AluSx SINE Alu -17 295 6 1649 150 64 47 chr12 27962679 27963040 -115823415 - MLT1B LTR MaLR -19 371 5 280 339 109 12 chr12 27963435 27963600 -115822855 + MIR3 SINE MIR 14 194 -14 1760 106 24 109 chr12 27964853 27965182 -115821273 - AluYb8 SINE Alu -17 301 1 331 116 72 14 chr12 27965433 27965502 -115820953 + L1MB2 LINE L1 6097 6169 -2 1665 168 30 14 chr12 27965608 27965905 -115820550 - AluJb SINE Alu -10 302 1 311 250 201 35 chr12 27969038 27969182 -115817273 + MIR3 SINE MIR 40 207 -1 330 240 173 34 chr12 27969636 27969844 -115816611 + Charlie7 DNA MER1_type 319 555 -2057 2193 127 0 0 chr12 27969904 27970196 -115816259 + AluSx SINE Alu 1 292 -20 330 26 0 0 chr12 27970199 27970238 -115816217 + (TG)n Simple_repeat Simple_repeat 2 40 0 1752 163 24 0 chr12 27970253 27970541 -115815914 + AluJo SINE Alu 1 295 -17 237 189 78 44 chr12 27970602 27970692 -115815763 + Charlie7 DNA MER1_type 2520 2612 0 259 254 212 85 chr12 27970730 27970895 -115815560 - MIR SINE MIR -55 207 22 1908 139 10 23 chr12 27971011 27971313 -115815142 - AluJo SINE Alu -14 298 1 223 314 14 0 chr12 27971320 27971390 -115815065 - MER5A DNA MER1_type -80 109 39 1066 159 0 28 chr12 27973783 27973959 -115812496 + FAM SINE Alu 5 175 0 1936 157 0 7 chr12 27974468 27974767 -115811688 - AluJb SINE Alu -15 297 1 824 158 0 8 chr12 27974781 27974908 -115811547 - FLAM_C SINE Alu -17 126 1 283 250 0 73 chr12 27975439 27975563 -115810892 + L1MC5 LINE L1 7175 7289 -672 800 188 73 122 chr12 27975683 27976092 -115810363 + L1MC5 LINE L1 7484 7872 -89 22 0 0 0 chr12 27976162 27976184 -115810271 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 6 13 chr12 27976579 27976893 -115809562 + AluSx SINE Alu 1 312 0 1131 74 0 0 chr12 27977646 27977781 -115808674 + AluSq/x SINE Alu 1 135 -177 1697 145 26 4 chr12 27977781 27978050 -115808405 + AluSx SINE Alu 1 275 -37 947 219 31 22 chr12 27978203 27978427 -115808028 - AluJo SINE Alu 0 312 87 230 263 32 68 chr12 27978996 27979186 -115807269 - AluSp SINE Alu -8 295 113 22 0 0 0 chr12 27979584 27979606 -115806849 + AT_rich Low_complexity Low_complexity 1 22 0 301 226 32 147 chr12 27979676 27979866 -115806589 - L1MC5 LINE L1 -89 7872 7705 26 30 0 0 chr12 27979983 27980016 -115806439 + GC_rich Low_complexity Low_complexity 1 33 0 250 187 26 65 chr12 27980123 27980278 -115806177 + (CCGCG)n Simple_repeat Simple_repeat 2 150 0 2659 141 4 57 chr12 27980466 27980496 -115805959 + MER31A LTR ERV1 1 31 -454 2502 40 0 52 chr12 27980496 27980824 -115805631 - AluY SINE Alu 0 311 1 2659 141 4 57 chr12 27980824 27981305 -115805150 + MER31A LTR ERV1 31 485 0 2007 226 74 90 chr12 27981370 27981759 -115804696 + L2 LINE L2 1759 2187 -1127 280 140 0 0 chr12 27981759 27981816 -115804639 + Tigger2 DNA MER2_type 2281 2337 -381 2007 226 74 90 chr12 27981816 27982167 -115804288 + L2 LINE L2 2187 2542 -772 2782 196 75 57 chr12 27982170 27982878 -115803577 + L1MC4 LINE L1 6966 7660 -382 1884 156 0 3 chr12 27982878 27983161 -115803294 - AluJb SINE Alu -30 282 1 2782 196 75 57 chr12 27983161 27983370 -115803085 + L1MC4 LINE L1 7660 7903 -139 333 0 0 0 chr12 27983370 27983407 -115803048 + (TG)n Simple_repeat Simple_repeat 2 38 0 2782 196 75 57 chr12 27983407 27983424 -115803031 + L1MC4 LINE L1 7903 7918 -124 2261 132 46 59 chr12 27983424 27983854 -115802601 + Tigger2 DNA MER2_type 1 435 -2283 2190 116 0 3 chr12 27983854 27984148 -115802307 + AluSq SINE Alu 5 297 -16 2261 132 46 59 chr12 27984148 27984221 -115802234 + Tigger2 DNA MER2_type 435 2718 0 443 207 60 0 chr12 27984240 27984356 -115802099 + L1MC4 LINE L1 7918 8040 -2 180 0 0 0 chr12 27984365 27984385 -115802070 + (CA)n Simple_repeat Simple_repeat 2 21 0 994 272 96 13 chr12 27984387 27985077 -115801378 + L2 LINE L2 2556 3311 -2 343 336 47 0 chr12 27985608 27985715 -115800740 + L2 LINE L2 3179 3290 -23 2857 10 0 0 chr12 27985834 27986147 -115800308 - AluYb8 SINE Alu -5 313 1 321 247 99 39 chr12 27986416 27986598 -115799857 - L1MC4 LINE L1 -27 8015 7823 334 289 173 13 chr12 27986601 27986757 -115799698 - MER5A DNA MER1_type 0 189 9 1077 108 76 58 chr12 27986794 27986956 -115799499 - Tigger5 DNA MER2_type -12 2311 2142 2289 63 0 30 chr12 27986956 27987279 -115799176 - AluY SINE Alu 0 311 1 1077 108 76 58 chr12 27987279 27987339 -115799116 - Tigger5 DNA MER2_type -181 2142 2085 494 238 66 3 chr12 27987329 27987504 -115798951 - Tigger5 DNA MER2_type -2085 238 1 * 1853 147 20 7 chr12 27987601 27987901 -115798554 - AluJb SINE Alu -8 304 1 710 227 92 109 chr12 27988076 27988757 -115797698 - L1MC5 LINE L1 -548 7494 6888 534 292 88 12 chr12 27989045 27989086 -115797369 - MER5A DNA MER1_type 0 189 153 1959 113 0 0 chr12 27989086 27989342 -115797113 - AluSq SINE Alu -57 256 1 534 292 88 12 chr12 27989342 27989471 -115796984 - MER5A DNA MER1_type -36 153 6 1849 181 45 14 chr12 27990268 27990622 -115795833 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr12 27990705 27990728 -115795727 + AT_rich Low_complexity Low_complexity 1 23 0 912 148 0 22 chr12 27990728 27990863 -115795592 + FLAM_C SINE Alu 2 133 0 208 292 69 62 chr12 27990932 27991062 -115795393 + MIR SINE MIR 132 262 0 1065 227 20 0 chr12 27991771 27991974 -115794481 - MER58A DNA MER1_type -16 208 2 353 319 183 48 chr12 27992296 27992519 -115793936 + L2 LINE L2 1716 1908 -1406 2056 133 0 29 chr12 27992519 27992828 -115793627 - AluSg SINE Alu -10 300 1 353 319 183 48 chr12 27992828 27993568 -115792887 + L2 LINE L2 1908 2809 -505 2434 61 0 3 chr12 27993810 27994103 -115792352 + AluSg SINE Alu 1 292 -18 1465 215 28 28 chr12 27994580 27994934 -115791521 - MLT1A1 LTR MaLR 0 365 12 477 185 69 69 chr12 27995108 27995158 -115791297 - L1MA10 LINE L1 -3 6317 6268 2511 68 0 0 chr12 27995158 27995454 -115791001 - AluY SINE Alu -15 296 1 477 185 69 69 chr12 27995454 27995568 -115790887 - L1MA10 LINE L1 -51 6269 5997 195 161 0 0 chr12 27996270 27996301 -115790154 + L2 LINE L2 3266 3296 -17 226 189 38 0 chr12 27996725 27996778 -115789677 + (CA)n Simple_repeat Simple_repeat 2 56 0 1073 154 123 26 chr12 27996880 27997075 -115789380 + AluJo SINE Alu 5 218 -94 225 260 0 0 chr12 27997096 27997146 -115789309 + Alu SINE Alu 84 133 0 435 343 7 7 chr12 27998167 27998310 -115788145 - MIR SINE MIR -73 189 47 360 216 0 14 chr12 27998544 27998618 -115787837 + MIR SINE MIR 74 146 -116 2227 112 7 0 chr12 28000500 28000795 -115785660 - AluSx SINE Alu -15 297 1 2306 104 3 3 chr12 28000824 28001132 -115785323 - AluSc SINE Alu -1 308 1 450 187 21 0 chr12 28001492 28001596 -115784859 - L1ME LINE L1 -303 5818 5708 426 280 0 68 chr12 28002182 28002314 -115784141 + MER5B DNA MER1_type 1 123 -55 1850 255 87 55 chr12 28002353 28003472 -115782983 - L1ME3A LINE L1 -76 6094 4896 1246 162 73 8 chr12 28003472 28003706 -115782749 + L1PB4 LINE L1 5905 6153 -3 1850 255 87 55 chr12 28003706 28004263 -115782192 - L1ME3A LINE L1 -1274 4896 4359 776 172 8 8 chr12 28004270 28004392 -115782063 - FLAM_C SINE Alu -20 123 2 208 239 2 65 chr12 28004432 28004499 -115781956 + MER5B DNA MER1_type 123 177 -1 273 207 35 17 chr12 28004708 28004766 -115781689 + L2 LINE L2 3208 3266 -6 290 271 14 0 chr12 28004772 28004842 -115781613 + MIR SINE MIR 79 149 -113 210 253 48 60 chr12 28006700 28006783 -115779672 + MIR SINE MIR 111 192 -70 2377 71 7 0 chr12 28007413 28007710 -115778745 + AluSg SINE Alu 1 299 -11 321 254 6 85 chr12 28008091 28008268 -115778187 + MER31-int LTR ERV1 1050 1212 -3724 22 0 0 0 chr12 28009018 28009040 -115777415 + GC_rich Low_complexity Low_complexity 1 22 0 2378 137 146 2 chr12 28009839 28010263 -115776192 - MER31A LTR ERV1 0 485 1 23 0 0 0 chr12 28010705 28010728 -115775727 + AT_rich Low_complexity Low_complexity 1 23 0 520 285 120 51 chr12 28010739 28011101 -115775354 + L1ME4a LINE L1 5290 5696 -425 1121 167 0 0 chr12 28011101 28011269 -115775186 + FAM SINE Alu 1 168 -7 520 285 120 51 chr12 28011269 28011397 -115775058 + L1ME4a LINE L1 5696 5814 -307 2209 111 0 13 chr12 28011517 28011823 -115774632 - AluSg SINE Alu -8 302 1 692 181 0 68 chr12 28011828 28011886 -115774569 - FLAM_A SINE Alu -185 126 66 4396 81 43 5 chr12 28011886 28012445 -115774010 - LTR19B LTR ERV1 0 580 1 692 181 0 68 chr12 28012445 28012519 -115773936 - FLAM_A SINE Alu -245 66 3 341 279 10 0 chr12 28012550 28012654 -115773801 + L1ME4a LINE L1 5955 6059 -62 1630 190 10 10 chr12 28013217 28013335 -115773120 + AluJo SINE Alu 1 118 -194 258 32 0 0 chr12 28013335 28013366 -115773089 + (CA)n Simple_repeat Simple_repeat 2 32 0 1630 190 10 10 chr12 28013366 28013542 -115772913 + AluJo SINE Alu 117 295 -17 183 184 0 0 chr12 28013560 28013598 -115772857 + GA-rich Low_complexity Low_complexity 3 40 0 241 311 63 122 chr12 28013876 28014098 -115772357 - L2 LINE L2 -36 3236 3028 2135 121 3 7 chr12 28014152 28014458 -115771997 + AluSx SINE Alu 1 305 -7 330 184 146 19 chr12 28014775 28014878 -115771577 + L1MC5 LINE L1 7815 7930 -31 1213 194 9 0 chr12 28015165 28015382 -115771073 + MER20 DNA MER1_type 1 219 0 198 345 48 48 chr12 28015857 28016025 -115770430 + L2 LINE L2 2489 2656 -658 2219 49 3 28 chr12 28016557 28016888 -115769567 + AluY SINE Alu 1 324 0 242 245 163 10 chr12 28017911 28017987 -115768468 - L1M4 LINE L1 -1568 4578 4482 2149 85 30 7 chr12 28017987 28018292 -115768163 - AluSx SINE Alu 0 312 1 242 245 163 10 chr12 28018292 28018313 -115768142 - L1M4 LINE L1 -1664 4482 4466 238 193 18 18 chr12 28018437 28018494 -115767961 - Tigger3(Golem) DNA MER2_type 0 3038 2982 * 1682 158 56 16 chr12 28018483 28018805 -115767650 - Tigger3(Golem) DNA MER2_type -878 2151 20 181 346 112 9 chr12 28019668 28019775 -115766680 + L2 LINE L2 3155 3272 0 2432 82 0 0 chr12 28021628 28021922 -115764533 - AluSg SINE Alu -16 294 1 1446 169 22 117 chr12 28022218 28022621 -115763834 - MLT1A1 LTR MaLR 0 365 1 787 228 131 19 chr12 28024547 28024815 -115761640 + L1MDa LINE L1 1911 2208 -4332 1081 215 28 20 chr12 28024820 28025067 -115761388 - AluJo SINE Alu 0 312 64 344 162 128 74 chr12 28025081 28025229 -115761226 + L1MDa LINE L1 2304 2459 -4081 2326 83 14 0 chr12 28025612 28025902 -115760553 - AluSp SINE Alu -19 294 1 274 192 0 0 chr12 28026305 28026357 -115760098 - HERVL-E LTR ERVL -5600 54 3 361 281 29 47 chr12 28026375 28026546 -115759909 - MLT2E LTR ERVL -6 622 455 2333 197 66 42 chr12 28027264 28027837 -115758618 + MER92B LTR ERV1 3 589 -47 1408 199 108 38 chr12 28027846 28028187 -115758268 - MLT1A1 LTR MaLR 0 365 1 637 161 125 36 chr12 28028263 28028431 -115758024 - LTR68 LTR ERV1 -557 183 1 360 241 229 26 chr12 28028442 28028708 -115757747 + L1MDa LINE L1 3278 3597 -2943 2181 82 0 21 chr12 28028836 28029127 -115757328 + AluSq SINE Alu 8 292 -21 22 35 0 0 chr12 28029128 28029157 -115757298 + AT_rich Low_complexity Low_complexity 1 29 0 1623 172 22 4 chr12 28029160 28029433 -115757022 - AluJo SINE Alu -31 281 4 2062 117 0 3 chr12 28029456 28029747 -115756708 - AluSq SINE Alu -23 290 1 799 177 61 37 chr12 28029759 28029923 -115756532 + AluJb SINE Alu 132 299 -13 12110 31 1 1 chr12 28030135 28032255 -115754200 - L1PA3 LINE L1 0 6155 4034 342 207 0 46 chr12 28032435 28032522 -115753933 + HsTC2 DNA Tc2 1818 1900 0 668 296 128 24 chr12 28032523 28033186 -115753269 + L1MDa LINE L1 4244 4975 -1565 279 274 115 45 chr12 28033304 28033461 -115752994 + L1MDa LINE L1 5169 5336 -1204 806 93 124 0 chr12 28033515 28033644 -115752811 + L1MB7 LINE L1 6040 6184 0 1986 99 3 21 chr12 28033654 28033936 -115752519 + AluSg SINE Alu 27 303 -7 2365 80 7 0 chr12 28033944 28034244 -115752211 + AluSp SINE Alu 1 302 -11 2054 109 0 4 chr12 28034355 28034631 -115751824 - AluY SINE Alu -22 289 15 447 230 207 0 chr12 28035073 28035208 -115751247 + MIR SINE MIR 14 176 -86 6358 37 0 0 chr12 28035212 28035919 -115750536 - L1PA5 LINE L1 -1 6153 5447 18228 60 6 0 chr12 28035919 28038248 -115748207 + L1P LINE L1 1179 3521 -2625 432 335 63 0 chr12 28038293 28038451 -115748004 - HERV16 LTR ERVL -2573 2423 2256 27 49 0 0 chr12 28038451 28038492 -115747963 + AT_rich Low_complexity Low_complexity 1 41 0 1102 306 59 40 chr12 28038515 28039109 -115747346 - HERV16 LTR ERVL -2718 2278 1674 489 196 98 0 chr12 28039116 28039228 -115747227 - L1ME2 LINE L1 -249 5915 5793 352 348 27 11 chr12 28039251 28039438 -115747017 - HERV16 LTR ERVL -4084 1680 1491 869 286 84 69 chr12 28039581 28039834 -115746621 - HERV16 LTR ERVL -3976 1020 772 2830 132 44 0 chr12 28039834 28040244 -115746211 - MSTA LTR MaLR 0 428 1 869 286 84 69 chr12 28040244 28040739 -115745716 - HERV16 LTR ERVL -4224 772 261 580 177 0 0 chr12 28040825 28040921 -115745534 - AluJb SINE Alu -9 303 208 2553 199 66 19 chr12 28040924 28041589 -115744866 - L1ME1 LINE L1 -58 6108 5413 692 164 30 0 chr12 28041597 28041731 -115744724 - L1MA10 LINE L1 -17 6317 6180 973 209 63 66 chr12 28041748 28042164 -115744291 - L1ME1 LINE L1 -327 5839 5555 1337 203 95 70 chr12 28042206 28042583 -115743872 + Charlie7 DNA MER1_type 1720 2117 -495 631 89 20 10 chr12 28042583 28042684 -115743771 - L1MA5A LINE L1 -3 6294 6193 1337 203 95 70 chr12 28042684 28042864 -115743591 + Charlie7 DNA MER1_type 2117 2291 -321 931 170 4 69 chr12 28042845 28043092 -115743363 + Charlie1 DNA MER1_type 1852 2082 -679 * 895 110 24 8 chr12 28043142 28043269 -115743186 + AluSq/x SINE Alu 5 133 -179 21 0 0 0 chr12 28043367 28043388 -115743067 + AT_rich Low_complexity Low_complexity 1 21 0 383 301 110 22 chr12 28044182 28044318 -115742137 + MIR SINE MIR 4 151 -111 22 0 0 0 chr12 28044384 28044406 -115742049 + AT_rich Low_complexity Low_complexity 1 22 0 1375 159 130 32 chr12 28044453 28044589 -115741866 - AluJb SINE Alu -8 304 183 2438 91 0 0 chr12 28044589 28044886 -115741569 - AluSc SINE Alu -12 297 1 1375 159 130 32 chr12 28044886 28045026 -115741429 - AluJb SINE Alu -129 183 1 1816 185 30 25 chr12 28045084 28045478 -115740977 + MSTD LTR MaLR 1 396 0 212 238 88 12 chr12 28045511 28045591 -115740864 - MIR SINE MIR -132 130 45 2370 97 0 0 chr12 28045738 28046036 -115740419 + AluSx SINE Alu 1 298 -14 740 255 75 82 chr12 28046235 28046544 -115739911 - L2 LINE L2 0 3313 3006 1950 114 46 4 chr12 28046544 28046825 -115739630 - AluSx SINE Alu -19 293 1 740 255 75 82 chr12 28046825 28046943 -115739512 - L2 LINE L2 -307 3006 2889 5227 121 18 10 chr12 28047296 28048165 -115738290 - L1PA13 LINE L1 0 6163 5288 1205 198 8 4 chr12 28048365 28048623 -115737832 + L1MB8 LINE L1 5920 6178 0 2039 138 21 0 chr12 28048646 28048935 -115737520 + AluSg SINE Alu 3 297 -13 285 218 109 27 chr12 28048968 28049115 -115737340 + L1ME3 LINE L1 2098 2256 -4140 1042 295 28 28 chr12 28049177 28049610 -115736845 + L1ME3 LINE L1 4803 5238 -977 1874 155 0 13 chr12 28049610 28049913 -115736542 + AluJo SINE Alu 1 299 -13 1042 295 28 28 chr12 28049913 28049988 -115736467 + L1ME3 LINE L1 5237 5311 -904 1883 142 18 0 chr12 28049993 28050275 -115736180 - AluSx SINE Alu -25 287 1 2600 97 66 2 chr12 28050332 28050757 -115735698 - HSMAR2 DNA Mariner 0 1302 851 1074 140 0 6 chr12 28050774 28050931 -115735524 - AluSg/x SINE Alu -20 292 137 5424 108 7 22 chr12 28050932 28051017 -115735438 - HSMAR2 DNA Mariner -453 849 764 2010 147 16 7 chr12 28051017 28051324 -115735131 - AluJb SINE Alu -2 310 1 5424 108 7 22 chr12 28051324 28052099 -115734356 - HSMAR2 DNA Mariner -538 764 2 2044 238 106 21 chr12 28052102 28052917 -115733538 + L1ME3 LINE L1 5340 6223 -8 887 171 0 0 chr12 28053088 28053217 -115733238 + FLAM_C SINE Alu 2 130 -13 279 0 0 0 chr12 28053259 28053290 -115733165 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 313 154 0 0 chr12 28053293 28053345 -115733110 - FLAM SINE Alu -24 109 58 899 103 48 0 chr12 28053345 28053471 -115732984 + AluJb SINE Alu 164 295 -17 445 274 61 5 chr12 28053792 28053989 -115732466 - LTR33A LTR ERVL -18 505 298 505 150 0 0 chr12 28054097 28054177 -115732278 - AluJ/FLAM SINE Alu -232 80 1 630 167 46 0 chr12 28054431 28054539 -115731916 + FLAM_C SINE Alu 12 124 -19 24 0 0 0 chr12 28054545 28054569 -115731886 + AT_rich Low_complexity Low_complexity 1 24 0 2156 111 7 0 chr12 28054695 28054992 -115731463 - AluSq SINE Alu -4 309 11 1894 156 17 0 chr12 28055157 28055452 -115731003 - AluSx SINE Alu -12 300 1 289 225 0 0 chr12 28055729 28055800 -115730655 + LTR67 LTR ERVL 487 557 0 2315 108 19 35 chr12 28055973 28056343 -115730112 + THE1B LTR MaLR 1 364 0 1890 129 3 3 chr12 28056737 28057046 -115729409 + AluY SINE Alu 1 309 -2 859 0 44 50 chr12 28057046 28057226 -115729229 + (TA)n Simple_repeat Simple_repeat 2 180 0 294 200 0 0 chr12 28057226 28057286 -115729169 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr12 28057286 28057311 -115729144 + (TG)n Simple_repeat Simple_repeat 2 26 0 302 306 85 10 chr12 28057315 28057514 -115728941 + LTR16A1 LTR ERVL 213 426 -31 2860 3 0 0 chr12 28057518 28057827 -115728628 - AluYa5 SINE Alu -2 309 1 646 155 0 48 chr12 28057898 28058085 -115728370 + CT-rich Low_complexity Low_complexity 1 178 0 867 124 7 27 chr12 28058093 28058398 -115728057 + (TTC)n Simple_repeat Simple_repeat 1 298 0 380 214 22 11 chr12 28058398 28058487 -115727968 + CT-rich Low_complexity Low_complexity 4 93 0 463 211 19 0 chr12 28058487 28058591 -115727864 - FLAM_A SINE Alu 0 142 37 22 0 0 0 chr12 28059908 28059930 -115726525 + AT_rich Low_complexity Low_complexity 1 22 0 199 267 0 0 chr12 28060482 28060527 -115725928 - L2 LINE L2 0 3313 3269 207 210 37 25 chr12 28060585 28060666 -115725789 + GA-rich Low_complexity Low_complexity 4 85 0 224 222 0 0 chr12 28061389 28061434 -115725021 - MIR SINE MIR 0 262 218 242 342 138 0 chr12 28061475 28061627 -115724828 - MIR SINE MIR -19 243 71 264 335 40 46 chr12 28061831 28061983 -115724472 + MIR3 SINE MIR 35 185 -23 431 204 91 38 chr12 28061998 28062130 -115724325 - L1ME3A LINE L1 -26 6144 6006 527 259 167 11 chr12 28062135 28062405 -115724050 - L1ME3A LINE L1 -181 5989 5678 259 263 113 17 chr12 28063025 28063169 -115723286 + MIR3 SINE MIR 22 186 -22 2269 96 7 3 chr12 28063331 28063634 -115722821 - AluSp SINE Alu -9 304 1 1766 174 7 26 chr12 28063903 28064213 -115722242 - AluJo SINE Alu -7 305 2 372 22 0 0 chr12 28064982 28065027 -115721428 + (TG)n Simple_repeat Simple_repeat 2 46 0 14929 90 12 5 chr12 28066144 28068630 -115717825 - L1PA8 LINE L1 0 6172 3668 342 0 0 0 chr12 28068630 28068668 -115717787 + (TG)n Simple_repeat Simple_repeat 2 39 0 14929 90 12 5 chr12 28068668 28069143 -115717312 - L1PA8 LINE L1 -2504 3668 3198 1548 147 4 0 chr12 28069143 28069374 -115717081 + AluSx SINE Alu 64 295 -17 21 0 0 0 chr12 28069962 28069983 -115716472 + AT_rich Low_complexity Low_complexity 1 21 0 453 252 82 10 chr12 28070074 28070280 -115716175 - L1MC4 LINE L1 -97 7945 7725 1078 42 0 0 chr12 28070348 28070468 -115715987 + AluSp SINE Alu 13 132 -181 2434 74 0 0 chr12 28070470 28070769 -115715686 + AluY SINE Alu 1 299 -12 755 262 109 49 chr12 28070778 28071229 -115715226 - L1MC4 LINE L1 -397 7645 7168 620 135 0 0 chr12 28072208 28072297 -115714158 - AluJ/FLAM SINE Alu -223 89 1 266 340 80 69 chr12 28072999 28073024 -115713431 - L2 LINE L2 -22 3250 3227 2039 147 3 0 chr12 28073024 28073323 -115713132 - AluSx SINE Alu -12 300 1 266 340 80 69 chr12 28073323 28073585 -115712870 - L2 LINE L2 -45 3227 2960 207 0 0 0 chr12 28074274 28074297 -115712158 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 395 264 82 25 chr12 28074835 28074994 -115711461 - MIR SINE MIR -50 212 45 2107 110 6 28 chr12 28075346 28075378 -115711077 - AluSq SINE Alu -2 311 280 351 0 0 0 chr12 28075378 28075417 -115711038 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2107 110 6 28 chr12 28075417 28075702 -115710753 - AluSq SINE Alu -33 280 1 1876 102 117 7 chr12 28077296 28077570 -115708885 - AluSg1 SINE Alu -5 304 1 2058 134 10 3 chr12 28077625 28077930 -115708525 - AluSg SINE Alu -3 307 1 292 239 67 44 chr12 28078076 28078256 -115708199 - L1ME4a LINE L1 -11 6110 5927 339 340 111 0 chr12 28078394 28078556 -115707899 - L1ME4a LINE L1 -405 5716 5537 234 302 0 0 chr12 28078627 28078680 -115707775 + (CACG)n Simple_repeat Simple_repeat 2 54 0 2018 125 0 20 chr12 28079504 28079807 -115706648 - AluSx SINE Alu -15 297 1 969 202 22 0 chr12 28079819 28079997 -115706458 - FRAM SINE Alu -1 175 1 723 299 33 12 chr12 28079999 28080240 -115706215 - MIR SINE MIR -8 254 9 2554 104 14 14 chr12 28080824 28081188 -115705267 - THE1B LTR MaLR 0 364 1 1094 218 33 17 chr12 28081771 28082180 -115704275 + MLT2B1 LTR ERVL 1 466 -54 223 118 78 0 chr12 28082193 28082244 -115704211 + CT-rich Low_complexity Low_complexity 4 58 0 241 179 0 0 chr12 28082244 28082307 -115704148 + MLT2C2 LTR ERVL 420 464 0 25 51 0 0 chr12 28082309 28082348 -115704107 + AT_rich Low_complexity Low_complexity 1 39 0 1588 219 60 7 chr12 28082394 28082828 -115703627 + L1MD3 LINE L1 7529 7985 -10 2347 97 0 3 chr12 28082836 28083134 -115703321 + AluSq SINE Alu 1 297 -16 291 130 0 0 chr12 28083459 28083505 -115702950 + L1MB3 LINE L1 6099 6144 -39 1485 148 48 14 chr12 28083529 28083819 -115702636 - L1MA6 LINE L1 -2 6298 5999 737 206 85 0 chr12 28084565 28084754 -115701701 - MER3 DNA MER1_type -4 205 1 865 128 55 8 chr12 28084960 28085183 -115701272 - L1MA9 LINE L1 -5 6307 6053 203 218 168 59 chr12 28085883 28085984 -115700471 + MIR SINE MIR 42 153 -109 15111 47 1 1 chr12 28086504 28088490 -115697965 + L1P LINE L1 1135 3121 -3025 556 330 152 35 chr12 28089168 28089680 -115696775 + L2 LINE L2 2337 2908 -406 363 302 208 0 chr12 28089848 28090007 -115696448 - MER91A DNA MER1_type -1 195 4 622 99 0 0 chr12 28090966 28091057 -115695398 - MLT1C LTR MaLR -376 91 1 225 151 0 0 chr12 28091249 28091302 -115695153 + CT-rich Low_complexity Low_complexity 1 53 0 1948 145 3 3 chr12 28091811 28092129 -115694326 - AluJb SINE Alu 0 318 1 273 29 0 0 chr12 28092406 28092440 -115694015 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1731 186 17 13 chr12 28093235 28093536 -115692919 + AluJb SINE Alu 1 302 -10 207 288 51 0 chr12 28093955 28094014 -115692441 + L2 LINE L2 3205 3266 -6 1171 196 0 2 chr12 28094137 28094434 -115692021 + MER2 DNA MER2_type 1 344 -1 2780 124 59 40 chr12 28094883 28095479 -115690976 + MER4B LTR ERV1 1 774 -5 1884 142 45 3 chr12 28095783 28096113 -115690342 + MER2 DNA MER2_type 1 344 0 242 220 34 0 chr12 28096254 28096313 -115690142 + L2 LINE L2 2405 2465 -849 321 215 25 0 chr12 28096395 28096474 -115689981 + L1ME2 LINE L1 6076 6156 -8 260 266 28 9 chr12 28096494 28096603 -115689852 + (TA)n Simple_repeat Simple_repeat 2 112 0 1038 261 53 57 chr12 28096615 28096743 -115689712 + L2 LINE L2 2557 2684 -629 2508 61 3 6 chr12 28096743 28097055 -115689400 - AluY SINE Alu 0 311 1 1038 261 53 57 chr12 28097055 28097445 -115689010 + L2 LINE L2 2684 3068 -245 631 232 197 10 chr12 28097485 28097683 -115688772 + MIR SINE MIR 4 238 -24 277 233 60 45 chr12 28097701 28097834 -115688621 + L2 LINE L2 3098 3232 -81 293 257 0 43 chr12 28097910 28097980 -115688475 + L2 LINE L2 3247 3313 0 1083 187 98 0 chr12 28098033 28098236 -115688219 - MER58A DNA MER1_type -1 223 1 408 241 89 9 chr12 28099261 28099373 -115687082 - MER5C DNA MER1_type -201 123 3 352 204 120 56 chr12 28099492 28099600 -115686855 + L2 LINE L2 3188 3302 -11 1804 169 7 3 chr12 28100256 28100563 -115685892 + AluJb SINE Alu 1 308 -4 1764 153 51 4 chr12 28101830 28102105 -115684350 + AluJb SINE Alu 1 288 -24 743 211 69 18 chr12 28102113 28102388 -115684067 - L1MC5 LINE L1 -71 7890 7602 1905 140 35 3 chr12 28102414 28102700 -115683755 - AluSx SINE Alu -17 295 1 495 182 34 0 chr12 28102719 28102807 -115683648 + FLAM_A SINE Alu 34 124 -18 556 230 9 0 chr12 28103282 28103395 -115683060 - MER5A DNA MER1_type -15 174 61 2143 123 0 23 chr12 28103405 28103714 -115682741 - AluSx SINE Alu 0 312 11 201 147 0 0 chr12 28103714 28103748 -115682707 - MER5A DNA MER1_type -117 72 39 1502 118 8 0 chr12 28103816 28104053 -115682402 - L1MA3 LINE L1 -3 6302 6064 1919 147 13 19 chr12 28105066 28105380 -115681075 - AluJo SINE Alu 0 312 1 422 333 113 5 chr12 28105738 28105960 -115680495 - LTR16C LTR ERVL -121 370 125 690 228 181 20 chr12 28106252 28106534 -115679921 - L1ME2 LINE L1 -69 6097 5770 403 238 66 13 chr12 28106844 28106995 -115679460 - L1M4 LINE L1 -3382 2764 2606 316 215 86 0 chr12 28107031 28107124 -115679331 + L1MEc LINE L1 2148 2248 -4148 791 240 107 8 chr12 28107164 28107527 -115678928 - L1M4 LINE L1 -3608 2538 2140 1567 98 18 0 chr12 28107551 28107776 -115678679 - L1PB3 LINE L1 -3 6151 5923 461 176 0 22 chr12 28107938 28108029 -115678426 + FLAM_A SINE Alu 43 131 -11 360 308 128 31 chr12 28108030 28108225 -115678230 - L1ME2 LINE L1 -634 5530 5317 183 235 35 96 chr12 28108379 28108494 -115677961 + L2 LINE L2 3103 3210 -103 * 225 234 13 13 chr12 28108492 28108569 -115677886 + MER5C DNA MER1_type 71 147 -177 35857 80 9 18 chr12 28108926 28115127 -115671328 - L1PA6 LINE L1 -7 6147 11 263 295 104 42 chr12 28115914 28116107 -115670348 + MIR SINE MIR 35 239 -23 208 224 0 20 chr12 28116148 28116197 -115670258 + (TG)n Simple_repeat Simple_repeat 2 49 0 259 146 218 0 chr12 28116973 28117028 -115669427 - MER5A DNA MER1_type -114 75 9 828 163 45 67 chr12 28117115 28117293 -115669162 - FAM SINE Alu -1 174 1 212 309 68 34 chr12 28117298 28117505 -115668950 + L2 LINE L2 2235 2448 -866 846 63 102 8 chr12 28118584 28118711 -115667744 - MER85 DNA T2_type 0 139 1 291 281 34 0 chr12 28118941 28119030 -115667425 - LTR33 LTR ERVL -425 96 5 483 18 0 0 chr12 28119030 28119086 -115667369 + (CA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr12 28119272 28119298 -115667157 + AT_rich Low_complexity Low_complexity 1 26 0 1039 242 43 62 chr12 28119316 28119733 -115666722 + MLT1I LTR MaLR 1 409 0 194 286 18 0 chr12 28119733 28119789 -115666666 + L3b LINE CR1 1526 1582 -1 2265 104 7 3 chr12 28120273 28120572 -115665883 - AluSx SINE Alu -12 300 1 541 270 101 0 chr12 28120774 28120952 -115665503 - L3 LINE CR1 -745 832 637 632 158 0 0 chr12 28121316 28121417 -115665038 + AluJ/FLAM SINE Alu 1 101 -211 1605 180 22 33 chr12 28121520 28121882 -115664573 + MER63 DNA MER1_type 703 1060 0 477 252 46 136 chr12 28121992 28122125 -115664330 - LTR33 LTR ERVL -9 512 369 362 160 0 85 chr12 28122125 28122219 -115664236 + L1MB8 LINE L1 6087 6172 -6 477 252 46 136 chr12 28122219 28122474 -115663981 - LTR33 LTR ERVL -152 369 159 477 258 49 72 chr12 28122613 28122877 -115663578 - MIR SINE MIR 0 262 5 2374 85 10 0 chr12 28122889 28123195 -115663260 - AluSq SINE Alu -4 309 1 296 233 19 19 chr12 28123230 28123333 -115663122 + L1MC/D LINE L1 5704 5806 -2002 1219 150 40 22 chr12 28123380 28123583 -115662872 + L1MB3 LINE L1 5496 5705 -586 2351 126 54 54 chr12 28123583 28123753 -115662702 - MER65C LTR ERV1 0 461 292 1928 157 3 7 chr12 28123753 28124058 -115662397 - AluJb SINE Alu -8 304 1 2351 126 54 54 chr12 28124058 28124348 -115662107 - MER65C LTR ERV1 -168 293 1 1219 150 40 22 chr12 28124348 28124370 -115662085 + L1MB3 LINE L1 5705 5725 -566 12214 113 5 44 chr12 28124378 28126828 -115659627 + L1P3 LINE L1 2 2447 -4014 1347 250 37 61 chr12 28127511 28128122 -115658333 + L2 LINE L2 2704 3311 -2 204 216 0 0 chr12 28128769 28128806 -115657649 + CT-rich Low_complexity Low_complexity 3 39 0 1288 173 16 4 chr12 28128811 28129065 -115657390 + L1MB3 LINE L1 5925 6181 -2 487 306 47 10 chr12 28129226 28129419 -115657036 + MIR SINE MIR 27 226 -36 182 245 0 41 chr12 28131211 28131260 -115655195 + L2 LINE L2 3226 3272 0 264 284 0 11 chr12 28132288 28132376 -115654079 + L1MC5 LINE L1 7825 7911 -50 194 184 0 26 chr12 28132581 28132619 -115653836 + L3 LINE CR1 1540 1576 -1 249 103 0 0 chr12 28133547 28133586 -115652869 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28133792 28134128 -115652327 - L2 LINE L2 0 3272 2898 180 0 0 0 chr12 28134579 28134599 -115651856 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 993 203 42 0 chr12 28134601 28134760 -115651695 - AluJo SINE Alu -28 284 114 246 32 0 0 chr12 28134760 28134791 -115651664 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 993 203 42 0 chr12 28134791 28134823 -115651632 - AluJo SINE Alu -198 114 85 351 0 0 0 chr12 28134868 28134907 -115651548 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 688 144 63 0 chr12 28134907 28135018 -115651437 - FLAM_C SINE Alu -25 118 1 742 231 0 0 chr12 28136529 28136659 -115649796 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr12 28136669 28136693 -115649762 + AT_rich Low_complexity Low_complexity 1 24 0 6463 99 27 1 chr12 28137966 28138954 -115647501 + L1MA2 LINE L1 5291 6304 0 545 277 77 20 chr12 28139039 28139234 -115647221 + MIR SINE MIR 33 238 -24 16085 27 4 1 chr12 28139388 28142075 -115644380 - L1PA4 LINE L1 -3 6152 3455 2122 127 10 0 chr12 28142075 28142375 -115644080 - AluSq SINE Alu -10 303 1 212 77 26 0 chr12 28142680 28142719 -115643736 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 220 17 0 chr12 28143282 28143341 -115643114 + MIR SINE MIR 57 116 -146 189 0 0 0 chr12 28143341 28143362 -115643093 + (T)n Simple_repeat Simple_repeat 1 21 0 791 187 0 15 chr12 28143797 28143931 -115642524 - FLAM_C SINE Alu -1 132 1 1252 139 0 5 chr12 28145833 28146020 -115640435 + AluSq SINE Alu 1 186 -127 2198 100 10 3 chr12 28146565 28146866 -115639589 - AluSc SINE Alu -6 303 1 2171 147 0 0 chr12 28148756 28149068 -115637387 - AluSx SINE Alu 0 312 1 2209 119 3 3 chr12 28149145 28149456 -115636999 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 28150324 28150345 -115636110 + AT_rich Low_complexity Low_complexity 1 21 0 313 297 42 8 chr12 28150961 28151079 -115635376 - MIR SINE MIR -68 140 19 1823 159 36 0 chr12 28151369 28151670 -115634785 + AluSx SINE Alu 1 312 0 467 306 50 68 chr12 28152158 28152495 -115633960 + MLT1I LTR MaLR 79 409 0 2104 135 0 13 chr12 28152792 28153103 -115633352 - AluSx SINE Alu -5 307 1 22 0 0 0 chr12 28153103 28153125 -115633330 + AT_rich Low_complexity Low_complexity 1 22 0 582 76 17 136 chr12 28153144 28153262 -115633193 + AluSg/x SINE Alu 197 300 -12 1611 238 145 4 chr12 28153264 28153810 -115632645 - LTR50 LTR ERVL -89 706 84 710 268 7 0 chr12 28153830 28153983 -115632472 + MER91A DNA MER1_type 33 186 -10 661 125 0 0 chr12 28154053 28154149 -115632306 - FRAM SINE Alu -16 160 65 925 170 20 7 chr12 28154249 28154402 -115632053 + FRAM SINE Alu 5 159 -17 1999 137 3 3 chr12 28154483 28154775 -115631680 + AluJb SINE Alu 1 292 -20 422 306 7 35 chr12 28155443 28155587 -115630868 + L2 LINE L2 3133 3272 0 419 246 57 37 chr12 28157305 28157549 -115628906 - L1ME4a LINE L1 -1 6120 5872 30 45 0 0 chr12 28157559 28157603 -115628852 + AT_rich Low_complexity Low_complexity 1 44 0 2144 143 0 0 chr12 28157668 28157969 -115628486 - AluSx SINE Alu -11 301 1 826 211 124 18 chr12 28158115 28158333 -115628122 - MIR SINE MIR -9 253 13 6412 167 23 7 chr12 28159147 28160770 -115625685 + L1PA16 LINE L1 3972 5617 -549 3471 108 2 0 chr12 28160870 28161369 -115625086 + L1PA16 LINE L1 5657 6156 -10 245 231 269 0 chr12 28162369 28162477 -115623978 - L2 LINE L2 0 3272 3136 299 340 197 7 chr12 28162667 28162814 -115623641 - MER91A DNA MER1_type -19 177 3 506 270 15 29 chr12 28162833 28162970 -115623485 - MIR SINE MIR -108 154 20 1869 131 10 28 chr12 28163134 28163451 -115623004 - AluJb SINE Alu 0 312 1 625 301 45 25 chr12 28163759 28164118 -115622337 - ERVL LTR ERVL -2060 3704 3339 1377 301 94 13 chr12 28164257 28164882 -115621573 - ERVL LTR ERVL -2139 2857 2182 343 327 7 7 chr12 28165284 28165434 -115621021 + LTR16C LTR ERVL 317 466 -25 1991 133 40 51 chr12 28165672 28165869 -115620586 - L1MA7 LINE L1 -128 6163 5965 1795 128 0 0 chr12 28165869 28166112 -115620343 - AluSx SINE Alu -69 243 1 1991 133 40 51 chr12 28166112 28166365 -115620090 - L1MA7 LINE L1 -326 5965 5718 20827 85 6 16 chr12 28166379 28170388 -115616067 - L1PA7 LINE L1 -2 6152 2184 517 102 159 11 chr12 28220480 28220568 -115565887 - FLAM_A SINE Alu -28 114 14 358 267 67 0 chr12 28220576 28220711 -115565744 + MLT1L LTR MaLR 459 602 -13 295 233 193 15 chr12 28220821 28220959 -115565496 + MIR SINE MIR 36 191 -61 27 49 0 0 chr12 28224863 28224904 -115561551 + AT_rich Low_complexity Low_complexity 1 41 0 21 82 0 0 chr12 28225568 28225617 -115560838 + AT_rich Low_complexity Low_complexity 1 49 0 1648 110 59 0 chr12 28225617 28225890 -115560565 - L1MA1 LINE L1 0 6302 6014 293 317 106 6 chr12 28226415 28226570 -115559885 + MIR3 SINE MIR 15 187 -21 996 35 0 0 chr12 28226653 28226767 -115559688 + AluY SINE Alu 187 300 -11 781 258 16 0 chr12 28226767 28226953 -115559502 + MIR SINE MIR 74 262 0 1768 108 0 88 chr12 28226975 28227271 -115559184 + AluJb SINE Alu 20 289 -23 203 291 27 95 chr12 28227316 28227464 -115558991 - L2 LINE L2 -220 3052 2915 242 236 0 0 chr12 28228363 28228418 -115558037 - L1ME4a LINE L1 -73 6048 5994 649 228 68 57 chr12 28228475 28228538 -115557917 - L1ME4a LINE L1 -233 5888 5827 2328 93 0 0 chr12 28228538 28228839 -115557616 - AluY SINE Alu -10 301 1 649 228 68 57 chr12 28228839 28229126 -115557329 - L1ME4a LINE L1 -294 5827 5534 242 163 20 20 chr12 28230451 28230500 -115555955 - L2 LINE L2 -2 3311 3263 475 284 24 8 chr12 28230606 28230733 -115555722 + MIR SINE MIR 60 188 -74 209 204 20 20 chr12 28231470 28231519 -115554936 - L2 LINE L2 -2 3311 3263 2151 145 0 3 chr12 28233120 28233431 -115553024 - AluSx SINE Alu -2 310 1 2084 87 0 108 chr12 28233937 28234272 -115552183 - AluSx SINE Alu -13 299 1 481 229 133 33 chr12 28234284 28234494 -115551961 - MLT1L LTR MaLR -326 289 59 2039 112 24 0 chr12 28235070 28235364 -115551091 - AluSx SINE Alu -11 301 1 368 271 157 18 chr12 28235774 28235940 -115550515 + MER5A DNA MER1_type 1 189 0 328 206 16 0 chr12 28236035 28236098 -115550357 + L2 LINE L2 3250 3313 0 2088 108 13 16 chr12 28236313 28236618 -115549837 + AluSx SINE Alu 1 304 -8 2079 107 0 0 chr12 28236977 28237279 -115549176 - AluY SINE Alu 0 302 1 240 113 19 38 chr12 28237298 28237351 -115549104 - L1MB2 LINE L1 -35 6136 6085 247 25 50 0 chr12 28237511 28237551 -115548904 + (TTG)n Simple_repeat Simple_repeat 1 42 0 298 307 38 14 chr12 28238345 28238451 -115548004 + MIR SINE MIR 42 147 -80 345 268 69 135 chr12 28239515 28240182 -115546273 - L1M2 LINE L1 -5519 1330 524 650 214 53 64 chr12 28241013 28241200 -115545255 + MIR SINE MIR 64 248 -14 22 35 0 0 chr12 28241482 28241511 -115544944 + AT_rich Low_complexity Low_complexity 1 29 0 453 245 200 7 chr12 28241601 28241749 -115544706 - MIR SINE MIR -62 146 5 228 86 0 0 chr12 28241947 28241982 -115544473 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 217 233 30 30 chr12 28242434 28242567 -115543888 + GA-rich Low_complexity Low_complexity 5 137 0 2323 83 17 7 chr12 28243415 28243717 -115542738 + AluSx SINE Alu 1 305 -7 294 322 13 53 chr12 28244209 28244361 -115542094 + L2 LINE L2 2890 3035 -237 636 305 16 16 chr12 28244407 28244594 -115541861 + MIR SINE MIR 31 217 -45 181 306 194 48 chr12 28244629 28244881 -115541574 + L2 LINE L2 3025 3313 0 2552 113 28 7 chr12 28245701 28246136 -115540319 - L1PA13 LINE L1 -3 6160 5717 243 0 0 0 chr12 28246858 28246885 -115539570 + (T)n Simple_repeat Simple_repeat 1 27 0 1606 209 86 16 chr12 28247147 28247578 -115538877 - L1MC4a LINE L1 0 7808 7348 1215 134 5 11 chr12 28247616 28247803 -115538652 - AluJb SINE Alu -8 304 119 265 292 14 111 chr12 28247888 28247994 -115538461 + L2 LINE L2 3143 3233 -39 1699 166 41 17 chr12 28247994 28248284 -115538171 - AluJo SINE Alu -15 297 1 265 292 14 111 chr12 28248284 28248321 -115538134 + L2 LINE L2 3233 3272 0 21 0 0 0 chr12 28248821 28248842 -115537613 + AT_rich Low_complexity Low_complexity 1 21 0 3884 164 22 28 chr12 28249198 28250412 -115536043 - L1P5 LINE L1 -555 5596 4403 3800 70 14 8 chr12 28250412 28250930 -115535525 + L1PB1 LINE L1 5630 6150 -1 206 351 98 11 chr12 28251162 28251336 -115535119 - L2 LINE L2 -384 2930 2742 1725 144 53 51 chr12 28252885 28253103 -115533352 - MER46B DNA MER2_type -2495 236 140 6306 185 28 21 chr12 28253103 28255297 -115531158 - L1PA16 LINE L1 -5 6161 3958 1725 144 53 51 chr12 28255297 28255433 -115531022 - MER46B DNA MER2_type -2591 140 6 390 345 34 8 chr12 28255445 28255709 -115530746 + L1ME4a LINE L1 5562 5832 -289 2548 173 44 26 chr12 28255772 28256315 -115530140 - MER74A LTR ERVL -1 557 5 1868 145 7 7 chr12 28256392 28256688 -115529767 + AluJo SINE Alu 1 296 -16 2198 117 0 0 chr12 28256705 28257004 -115529451 + AluSx SINE Alu 3 301 -11 398 181 55 87 chr12 28257819 28257946 -115528509 + MIR SINE MIR 61 183 -79 255 298 104 113 chr12 28258502 28258925 -115527530 + L2 LINE L2 2836 3254 -18 260 333 72 42 chr12 28259157 28259421 -115527034 - L3 LINE CR1 -690 887 616 288 343 69 0 chr12 28260147 28260249 -115526206 - L2 LINE L2 -6 3307 3199 2296 149 49 10 chr12 28260512 28260921 -115525534 - MSTB1 LTR MaLR -3 429 5 2241 88 0 7 chr12 28261120 28261428 -115525027 + AluSx SINE Alu 1 306 0 1617 176 9 46 chr12 28261875 28262198 -115524257 + AluJb SINE Alu 1 311 -1 337 257 0 0 chr12 28262198 28262268 -115524187 - MIR3 SINE MIR -46 162 93 221 268 18 0 chr12 28262490 28262546 -115523909 + L3 LINE CR1 403 459 -1118 382 262 177 0 chr12 28262758 28262899 -115523556 - MIR SINE MIR 0 262 97 1314 247 8 41 chr12 28262902 28263295 -115523160 + MLT2C1 LTR ERVL 18 397 0 957 180 114 9 chr12 28263468 28263679 -115522776 + MIR SINE MIR 16 248 -14 2154 141 0 3 chr12 28265441 28265753 -115520702 + AluSx SINE Alu 1 311 -1 8339 152 10 14 chr12 28266162 28267898 -115518557 + L1P4 LINE L1 3751 5473 -695 1223 66 0 0 chr12 28267898 28268050 -115518405 + AluY SINE Alu 144 295 -16 1416 119 31 0 chr12 28268051 28268277 -115518178 + L1P4 LINE L1 5481 5713 -450 1043 263 50 3 chr12 28268410 28268786 -115517669 - L1ME LINE L1 -521 5649 5256 7498 30 0 1 chr12 28268935 28270397 -115516058 - L1PA4 LINE L1 -1 6154 4693 2206 119 3 0 chr12 28270455 28270758 -115515697 - AluSq SINE Alu -9 304 1 1492 181 19 45 chr12 28271025 28271195 -115515260 - AluJb SINE Alu -10 302 129 198 0 0 0 chr12 28271195 28271217 -115515238 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2051 113 7 4 chr12 28271218 28271492 -115514963 - AluSx SINE Alu -36 276 2 1492 181 19 45 chr12 28271492 28271629 -115514826 - AluJb SINE Alu -182 130 1 563 260 226 6 chr12 28271857 28272034 -115514421 - MIR SINE MIR -17 245 30 2194 126 0 0 chr12 28272510 28272811 -115513644 - AluSx SINE Alu -7 305 5 317 285 44 57 chr12 28274249 28274407 -115512048 + MIR SINE MIR 107 262 0 181 152 43 65 chr12 28274620 28274666 -115511789 + MIR SINE MIR 107 151 -111 2043 94 65 0 chr12 28274789 28275065 -115511390 + AluSc SINE Alu 1 294 -15 185 308 55 104 chr12 28275647 28276050 -115510405 + L2 LINE L2 2520 2902 -412 299 252 52 105 chr12 28276070 28276159 -115510296 + L2 LINE L2 3115 3207 -106 2172 99 24 7 chr12 28276159 28276453 -115510002 - AluSq SINE Alu -12 301 3 299 252 52 105 chr12 28276453 28276573 -115509882 + L2 LINE L2 3207 3313 0 588 238 26 16 chr12 28276921 28277114 -115509341 - L1MC5 LINE L1 -48 7913 7719 516 168 32 11 chr12 28278081 28278176 -115508279 + FLAM_C SINE Alu 33 129 -14 270 0 0 0 chr12 28278209 28278239 -115508216 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 28278477 28278498 -115507957 + AT_rich Low_complexity Low_complexity 1 21 0 230 154 19 19 chr12 28279847 28279899 -115506556 + Tigger5 DNA MER2_type 2254 2305 -18 346 194 0 0 chr12 28279909 28279971 -115506484 - Tigger5 DNA MER2_type -2235 88 27 494 139 0 12 chr12 28279994 28280080 -115506375 + Tigger5 DNA MER2_type 2238 2322 -1 1705 95 0 9 chr12 28280259 28280491 -115505964 + AluSq SINE Alu 1 230 -83 31 0 0 0 chr12 28280491 28280522 -115505933 + AT_rich Low_complexity Low_complexity 1 31 0 359 285 117 39 chr12 28280744 28280923 -115505532 + MIR SINE MIR 70 262 0 245 333 48 9 chr12 28281183 28281288 -115505167 + L3b LINE CR1 1294 1402 -181 676 193 127 54 chr12 28285268 28285434 -115501021 - MIR SINE MIR -48 214 37 519 262 49 0 chr12 28285803 28285925 -115500530 - FLAM_C SINE Alu -4 129 2 2004 147 10 0 chr12 28285937 28286236 -115500219 - AluJb SINE Alu -10 302 1 2243 92 3 0 chr12 28287453 28287760 -115498695 - AluSp SINE Alu 0 308 1 810 222 62 23 chr12 28288657 28288833 -115497622 - MIR SINE MIR -25 237 55 2320 86 10 0 chr12 28288841 28289143 -115497312 + AluY SINE Alu 1 305 -6 388 286 67 62 chr12 28289464 28289642 -115496813 - MIR SINE MIR -50 212 34 2541 48 0 0 chr12 28290110 28290401 -115496054 - AluY SINE Alu -20 291 1 272 347 48 81 chr12 28290977 28291248 -115495207 - L2 LINE L2 -34 3238 2977 241 257 106 78 chr12 28291689 28291868 -115494587 - L2 LINE L2 -108 3164 2981 480 273 48 73 chr12 28293635 28293800 -115492655 - L3 LINE CR1 -12 1565 1405 732 338 149 22 chr12 28293800 28294675 -115491780 + L2 LINE L2 2109 3091 -181 204 176 0 0 chr12 28294762 28294796 -115491659 - MIR SINE MIR -9 253 220 204 164 73 91 chr12 28294796 28294817 -115491638 - L2 LINE L2 -14 3258 3205 408 230 182 14 chr12 28294888 28295036 -115491419 - L3 LINE CR1 -317 1260 1088 316 277 31 94 chr12 28295837 28295987 -115490468 - L3 LINE CR1 -507 1070 929 2107 120 20 0 chr12 28295987 28296279 -115490176 - AluSx SINE Alu -14 298 1 608 196 0 0 chr12 28296343 28296440 -115490015 - FLAM_C SINE Alu -19 124 28 2171 93 0 14 chr12 28296461 28296751 -115489704 - AluSx SINE Alu -26 286 1 574 297 209 42 chr12 28296788 28297428 -115489027 - L3 LINE CR1 -713 864 118 914 247 189 12 chr12 28298557 28299017 -115487438 + L2 LINE L2 2747 3313 0 281 257 50 40 chr12 28299805 28299902 -115486553 + MIR SINE MIR 58 154 -54 268 267 0 13 chr12 28299966 28300041 -115486414 - MIR SINE MIR -1 261 188 188 220 40 0 chr12 28300070 28300120 -115486335 + MIR SINE MIR 211 262 0 23 68 0 0 chr12 28300432 28300476 -115485979 + AT_rich Low_complexity Low_complexity 1 44 0 1018 168 0 12 chr12 28300681 28300848 -115485607 + FRAM SINE Alu 1 165 -1 2076 124 28 0 chr12 28300923 28301213 -115485242 - AluSx SINE Alu -14 298 1 240 314 121 32 chr12 28301815 28301939 -115484516 - L2 LINE L2 -6 3307 3173 347 256 13 0 chr12 28302642 28302720 -115483735 - MER2 DNA MER2_type 0 345 267 1371 157 0 0 chr12 28302747 28302957 -115483498 - MER2 DNA MER2_type -135 210 1 538 283 98 37 chr12 28303214 28303621 -115482834 - L1ME4a LINE L1 0 6121 5690 326 192 14 27 chr12 28303674 28303747 -115482708 + L2 LINE L2 3241 3312 -1 255 116 0 23 chr12 28305013 28305056 -115481399 - MER103 DNA DNA -123 43 2 769 188 10 57 chr12 28305423 28305615 -115480840 + AluJo SINE Alu 1 183 -129 2866 3 0 0 chr12 28305901 28306210 -115480245 - AluYa5 SINE Alu -2 309 1 753 241 127 0 chr12 28306247 28306467 -115479988 + MIR SINE MIR 3 250 -12 2030 107 7 3 chr12 28306578 28306869 -115479586 + AluSx SINE Alu 1 292 -20 505 271 142 56 chr12 28307218 28307668 -115478787 + L1ME LINE L1 5293 5781 -340 645 304 75 0 chr12 28307714 28307915 -115478540 + MIR SINE MIR 47 262 0 262 256 0 61 chr12 28308125 28308207 -115478248 - MIR SINE MIR -3 259 183 386 266 184 0 chr12 28308292 28308408 -115478047 - MIR SINE MIR -67 141 20 293 266 310 0 chr12 28309125 28309238 -115477217 + MIR3 SINE MIR 33 180 -28 24 32 0 0 chr12 28310067 28310098 -115476357 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 28310184 28310228 -115476227 + AT_rich Low_complexity Low_complexity 1 44 0 237 232 50 20 chr12 28311123 28311222 -115475233 - L1ME4a LINE L1 0 6121 6020 455 280 142 25 chr12 28311266 28311591 -115474864 - L1ME4a LINE L1 -199 5922 5560 2145 101 3 36 chr12 28311927 28312233 -115474222 - AluSx SINE Alu -14 298 3 203 156 0 0 chr12 28312475 28312507 -115473948 + CT-rich Low_complexity Low_complexity 1 32 0 235 272 24 40 chr12 28312507 28312632 -115473823 - L1ME4a LINE L1 -1121 5025 4903 1919 133 21 7 chr12 28312718 28313004 -115473451 - AluSx SINE Alu -22 290 1 41 78 0 0 chr12 28313466 28313556 -115472899 + AT_rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chr12 28313990 28314014 -115472441 + AT_rich Low_complexity Low_complexity 1 24 0 596 274 54 62 chr12 28314943 28315184 -115471271 - MIR SINE MIR -13 249 11 297 278 82 0 chr12 28315181 28315278 -115471177 - MIR SINE MIR -72 190 86 * 457 239 71 30 chr12 28315509 28315714 -115470741 - Charlie8 DNA MER1_type -1038 1379 84 211 264 11 35 chr12 28315883 28315970 -115470485 + MIR SINE MIR 168 252 -10 277 256 124 16 chr12 28316285 28316406 -115470049 + L2 LINE L2 3179 3312 -1 889 209 17 0 chr12 28317769 28317941 -115468514 - FAM SINE Alu 0 175 1 407 196 14 119 chr12 28318991 28319063 -115467392 - MER103 DNA DNA -28 138 87 2059 109 53 0 chr12 28319063 28319347 -115467108 + AluSx SINE Alu 1 299 -13 407 196 14 119 chr12 28319347 28319417 -115467038 - MER103 DNA DNA -79 87 11 1189 177 97 66 chr12 28319535 28319823 -115466632 - AluJb SINE Alu -4 298 2 21 57 0 0 chr12 28319973 28320008 -115466447 + AT_rich Low_complexity Low_complexity 1 35 0 223 398 0 23 chr12 28320204 28320292 -115466163 - MIR SINE MIR -104 104 19 202 291 0 0 chr12 28320901 28320956 -115465499 + MIR SINE MIR 158 212 -50 255 243 9 108 chr12 28321755 28321866 -115464589 + MER102a DNA MER1_type 221 320 -10 2125 95 0 14 chr12 28322991 28323275 -115463180 + AluSx SINE Alu 12 291 -21 296 339 138 28 chr12 28323709 28324036 -115462419 - L2 LINE L2 -557 2757 2395 370 259 157 0 chr12 28324053 28324219 -115462236 + L1MEd LINE L1 1043 1234 -4971 491 284 80 60 chr12 28324374 28324824 -115461631 + L1MEd LINE L1 1869 2327 -4069 2303 78 0 7 chr12 28326089 28326384 -115460071 - AluY SINE Alu -18 293 1 224 213 38 75 chr12 28326485 28326565 -115459890 - MIR SINE MIR -128 134 58 23 0 0 0 chr12 28326927 28326950 -115459505 + AT_rich Low_complexity Low_complexity 1 23 0 646 282 139 40 chr12 28327343 28327563 -115458892 + L2 LINE L2 2565 2762 -510 2297 51 41 17 chr12 28327563 28327857 -115458598 + AluY SINE Alu 1 301 -10 646 282 139 40 chr12 28327857 28328043 -115458412 + L2 LINE L2 2762 3012 -260 749 200 0 8 chr12 28328052 28328182 -115458273 + FRAM SINE Alu 1 127 -49 303 282 316 19 chr12 28328190 28328396 -115458059 + L2 LINE L2 3006 3272 0 1902 159 13 3 chr12 28328803 28329104 -115457351 + AluJb SINE Alu 2 305 -7 477 216 9 9 chr12 28329630 28329741 -115456714 - Charlie8 DNA MER1_type -1865 552 442 23 33 0 0 chr12 28329756 28329786 -115456669 + AT_rich Low_complexity Low_complexity 1 30 0 241 375 12 0 chr12 28330022 28330102 -115456353 - Charlie8 DNA MER1_type -2336 81 1 333 0 0 0 chr12 28331537 28331574 -115454881 + (CA)n Simple_repeat Simple_repeat 2 38 0 2052 81 55 0 chr12 28331578 28331849 -115454606 - AluSq SINE Alu -27 286 1 2214 81 21 0 chr12 28333365 28333649 -115452806 + AluSq SINE Alu 1 290 -23 679 155 11 0 chr12 28333649 28333823 -115452632 + (TA)n Simple_repeat Simple_repeat 1 176 0 1363 190 75 70 chr12 28334199 28334584 -115451871 - MLT1B LTR MaLR 0 390 4 445 293 144 17 chr12 28334788 28334969 -115451486 - L2 LINE L2 -1945 1369 1166 237 343 89 0 chr12 28334974 28335120 -115451335 - L2 LINE L2 -2967 347 189 771 174 252 16 chr12 28335319 28335561 -115450894 + MER33 DNA MER1_type 25 323 -1 2269 89 0 3 chr12 28336703 28336994 -115449461 - AluSc SINE Alu -19 290 1 2000 252 89 48 chr12 28339251 28339339 -115447116 - L1ME3A LINE L1 -219 5951 5868 183 42 0 0 chr12 28339339 28339363 -115447092 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1495 184 36 22 chr12 28339372 28339649 -115446806 - AluJo SINE Alu -31 281 1 2000 252 89 48 chr12 28339649 28340449 -115446006 - L1ME3A LINE L1 -309 5861 5095 1589 194 24 58 chr12 28340449 28340825 -115445630 - MLT1A1 LTR MaLR -2 363 1 2000 252 89 48 chr12 28340825 28341755 -115444700 - L1ME3A LINE L1 -1075 5095 4037 745 269 33 33 chr12 28341757 28342088 -115444367 - L1ME3A LINE L1 -2230 3916 3586 1135 275 111 18 chr12 28342097 28343027 -115443428 - L1ME3A LINE L1 -2677 3469 2454 421 287 102 28 chr12 28343203 28343457 -115442998 + L1ME4a LINE L1 5599 5871 -250 3122 139 57 9 chr12 28343474 28343999 -115442456 - MER44D DNA MER2_type 0 605 1 308 192 39 0 chr12 28344421 28344525 -115441930 + (TA)n Simple_repeat Simple_repeat 1 108 0 1981 139 7 0 chr12 28344529 28344817 -115441638 - AluSx SINE Alu -22 290 1 473 189 160 0 chr12 28345668 28345774 -115440681 + FLAM_A SINE Alu 1 123 -10 302 333 9 19 chr12 28346541 28346646 -115439809 - MIR3 SINE MIR -31 177 74 2442 87 0 3 chr12 28347269 28347579 -115438876 - AluSc SINE Alu 0 309 1 184 320 27 27 chr12 28347627 28347702 -115438753 - L2 LINE L2 -10 3262 3188 204 310 35 0 chr12 28347815 28347873 -115438582 - L2 LINE L2 -225 3047 2988 917 164 0 7 chr12 28347876 28348022 -115438433 + FRAM SINE Alu 1 144 -32 279 377 71 15 chr12 28348078 28348346 -115438109 - L2 LINE L2 -338 2976 2694 3252 171 30 39 chr12 28348409 28348657 -115437798 - L1MB4 LINE L1 -17 6163 5914 1882 129 0 8 chr12 28348657 28348921 -115437534 + AluSx SINE Alu 40 301 -11 3252 171 30 39 chr12 28348921 28349342 -115437113 - L1MB4 LINE L1 -266 5914 5498 2534 69 0 0 chr12 28349342 28349646 -115436809 - AluY SINE Alu -7 304 1 3252 171 30 39 chr12 28349646 28349702 -115436753 - L1MB4 LINE L1 -682 5498 5443 508 336 136 35 chr12 28349713 28350311 -115436144 - L2 LINE L2 -609 2705 2048 1525 183 67 3 chr12 28350902 28351202 -115435253 - MER2 DNA MER2_type -25 320 2 324 296 133 7 chr12 28351416 28351551 -115434904 + MIR SINE MIR 39 190 -72 437 257 87 108 chr12 28351835 28352317 -115434138 + L1ME4a LINE L1 5568 6039 -82 2616 52 0 3 chr12 28353392 28353701 -115432754 + AluY SINE Alu 1 308 -3 909 179 0 0 chr12 28354289 28354434 -115432021 + FRAM SINE Alu 22 166 -10 465 198 76 25 chr12 28354832 28354989 -115431466 + MER104 DNA Tc2 16 180 0 323 322 98 41 chr12 28354991 28355597 -115430858 - L2 LINE L2 -162 3110 2473 1218 99 82 0 chr12 28355604 28355786 -115430669 + MER30 DNA MER1_type 1 197 -33 245 354 31 21 chr12 28357233 28357329 -115429126 + MIR SINE MIR 17 113 -95 1582 140 121 0 chr12 28357401 28357665 -115428790 + AluJb SINE Alu 1 296 -16 2347 118 97 0 chr12 28357955 28358345 -115428110 - MSTA LTR MaLR 0 428 1 205 414 94 8 chr12 28358971 28359099 -115427356 - L2 LINE L2 -9 3263 3125 349 234 228 8 chr12 28359492 28359713 -115426742 - MER5C DNA MER1_type 0 324 1 674 261 72 10 chr12 28359760 28359967 -115426488 + MIR SINE MIR 2 221 -41 30 45 0 0 chr12 28361023 28361067 -115425388 + AT_rich Low_complexity Low_complexity 1 44 0 1600 150 86 10 chr12 28361229 28361543 -115424912 - MER44D DNA MER2_type -1 608 1 2151 133 0 31 chr12 28361705 28362027 -115424428 + AluSx SINE Alu 1 312 0 1917 120 3 3 chr12 28363299 28363583 -115422872 - AluJb SINE Alu -8 304 21 186 43 0 0 chr12 28363828 28363851 -115422604 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 295 43 7 chr12 28364185 28364324 -115422131 + MIR SINE MIR 86 229 -33 321 118 0 0 chr12 28364746 28364797 -115421658 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr12 28366469 28366500 -115419955 + AT_rich Low_complexity Low_complexity 1 31 0 402 253 178 14 chr12 28367667 28367736 -115418719 - MIR SINE MIR -12 250 194 3751 109 71 12 chr12 28367736 28368340 -115418115 - L1PA16 LINE L1 -1 6165 5526 402 253 178 14 chr12 28368340 28368416 -115418039 - MIR SINE MIR -68 194 81 528 301 35 0 chr12 28368611 28368754 -115417701 + MIR SINE MIR 11 158 -104 747 310 66 0 chr12 28368760 28368973 -115417482 + MIR SINE MIR 4 230 -32 745 178 185 0 chr12 28369993 28370150 -115416305 - MER5A DNA MER1_type -3 186 1 350 287 30 10 chr12 28370378 28370479 -115415976 - L2 LINE L2 -12 3260 3158 535 148 46 9 chr12 28370549 28370657 -115415798 + MER63 DNA MER1_type 490 601 -459 1460 209 0 0 chr12 28370657 28370906 -115415549 - AluJo SINE Alu -63 249 1 229 260 0 0 chr12 28371135 28371185 -115415270 + L2 LINE L2 3264 3313 0 1439 186 23 72 chr12 28371355 28371742 -115414713 + MLT1A2 LTR MaLR 1 368 -6 274 308 55 11 chr12 28372549 28372640 -115413815 + MIR3 SINE MIR 11 105 -103 513 226 80 0 chr12 28372660 28372797 -115413658 + MLT1B LTR MaLR 1 148 -242 308 191 32 0 chr12 28372795 28372858 -115413597 + MLT1B LTR MaLR 326 390 0 * 198 314 0 0 chr12 28372895 28372946 -115413509 + L2 LINE L2 3204 3254 -18 * 231 209 0 0 chr12 28372912 28372955 -115413500 + MIR SINE MIR 217 259 -3 293 194 237 43 chr12 28373082 28373175 -115413280 - MIR SINE MIR -126 136 26 2161 110 0 0 chr12 28373721 28374044 -115412411 - AluY SINE Alu 0 323 1 597 158 18 0 chr12 28374734 28374848 -115411607 + LTR16C LTR ERVL 354 469 -22 249 152 0 22 chr12 28375176 28375222 -115411233 + MER75 DNA T2_type 469 513 -1 196 327 19 45 chr12 28375621 28375777 -115410678 - L2 LINE L2 -820 2494 2343 202 264 0 75 chr12 28375977 28376030 -115410425 - L3 LINE CR1 -102 1475 1427 508 208 190 18 chr12 28376038 28376259 -115410196 + MIR SINE MIR 4 262 0 263 291 171 17 chr12 28378758 28378875 -115407580 + MER91A DNA MER1_type 62 196 0 23 33 0 0 chr12 28378967 28378997 -115407458 + AT_rich Low_complexity Low_complexity 1 30 0 226 238 57 9 chr12 28380264 28380369 -115406086 + L1M4 LINE L1 4300 4409 -1737 1665 161 6 74 chr12 28380555 28380878 -115405577 + AluJb SINE Alu 1 301 -11 433 281 92 69 chr12 28380931 28381291 -115405164 + L1M4 LINE L1 4672 5039 -1107 41442 44 3 1 chr12 28381292 28387428 -115399027 + L1PA4 LINE L1 3 6150 -5 26 0 0 0 chr12 28387428 28387454 -115399001 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 28387539 28387582 -115398873 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr12 28387724 28387759 -115398696 + AT_rich Low_complexity Low_complexity 1 35 0 1057 132 0 18 chr12 28387801 28387968 -115398487 - AluJb SINE Alu -14 298 135 1379 163 4 9 chr12 28388009 28388242 -115398213 + AluJo SINE Alu 1 232 -80 2107 192 12 23 chr12 28388250 28388839 -115397616 - L1M LINE L1 -743 5403 4840 3560 230 70 28 chr12 28389259 28389373 -115397082 + L1M2 LINE L1 2533 2641 -4924 189 0 0 0 chr12 28389373 28389394 -115397061 + (CA)n Simple_repeat Simple_repeat 2 22 0 3560 230 70 28 chr12 28389394 28390564 -115395891 + L1M2 LINE L1 2641 3887 -3678 864 184 35 29 chr12 28390564 28390738 -115395717 + FAM SINE Alu 1 175 0 3560 230 70 28 chr12 28390738 28391585 -115394870 + L1M2 LINE L1 3887 4697 -2868 1566 222 19 26 chr12 28391593 28392021 -115394434 + L1MA9 LINE L1 5839 6263 -49 861 265 56 20 chr12 28392772 28393021 -115393434 + MIR SINE MIR 5 262 0 1535 183 20 23 chr12 28393354 28393654 -115392801 + AluJo SINE Alu 1 299 -13 280 299 204 25 chr12 28394132 28394333 -115392122 + MIR SINE MIR 18 254 -8 2328 104 0 0 chr12 28394390 28394698 -115391757 + AluY SINE Alu 1 308 -3 1822 160 16 29 chr12 28394997 28395310 -115391145 + AluJo SINE Alu 1 309 -3 2081 128 0 10 chr12 28395376 28395672 -115390783 + AluSg SINE Alu 1 293 -17 2303 172 10 5 chr12 28395906 28396296 -115390159 - MSTD LTR MaLR 0 396 5 369 43 0 0 chr12 28396702 28396749 -115389706 + (CA)n Simple_repeat Simple_repeat 1 47 0 1135 89 0 20 chr12 28397954 28398100 -115388355 + AluSx SINE Alu 1 143 -169 457 145 40 0 chr12 28398100 28398176 -115388279 - MSTD LTR MaLR -224 172 94 1124 131 0 0 chr12 28398176 28398329 -115388126 + AluSx SINE Alu 148 300 -12 2469 64 10 10 chr12 28400007 28400318 -115386137 - AluY SINE Alu 0 311 1 452 253 198 0 chr12 28400362 28400524 -115385931 + MIR3 SINE MIR 9 202 -6 1807 134 55 0 chr12 28400560 28400867 -115385588 + MER33 DNA MER1_type 1 324 0 24 77 0 0 chr12 28401911 28401963 -115384492 + AT_rich Low_complexity Low_complexity 1 52 0 367 181 84 0 chr12 28402099 28402182 -115384273 - MLT1J2 LTR MaLR -9 441 352 449 329 48 29 chr12 28402233 28402440 -115384015 - MLT1K LTR MaLR -158 430 220 261 307 150 41 chr12 28402843 28403136 -115383319 - L2 LINE L2 -741 2573 2249 352 258 67 8 chr12 28403144 28403264 -115383191 + MIR SINE MIR 102 228 -34 213 286 117 0 chr12 28403674 28403751 -115382704 - L2 LINE L2 -49 3223 3138 1078 180 16 16 chr12 28403902 28404091 -115382364 - MER5A DNA MER1_type 0 189 1 2435 212 66 50 chr12 28404423 28405088 -115381367 - LTR8 LTR ERV1 0 691 16 198 0 0 0 chr12 28405508 28405530 -115380925 + (T)n Simple_repeat Simple_repeat 1 22 0 639 230 84 34 chr12 28406126 28406329 -115380126 + MIR SINE MIR 51 262 0 1532 147 0 32 chr12 28406507 28406759 -115379696 + AluJb SINE Alu 1 244 -68 366 187 143 77 chr12 28407745 28407954 -115378501 - L1ME4a LINE L1 0 6121 5899 293 277 98 54 chr12 28407975 28408159 -115378296 - HAL1 LINE L1 -12 2495 2304 311 341 18 24 chr12 28408191 28408355 -115378100 - L1ME4a LINE L1 -342 5779 5617 676 253 77 21 chr12 28409221 28409454 -115377001 - MIR SINE MIR 0 262 17 4000 157 82 46 chr12 28409545 28409579 -115376876 - L1MB2 LINE L1 -4 6167 6136 1897 118 57 7 chr12 28409579 28409858 -115376597 - AluSx SINE Alu -19 293 1 4000 157 82 46 chr12 28409858 28410865 -115375590 - L1MB2 LINE L1 -35 6136 5100 491 257 9 0 chr12 28411179 28411288 -115375167 - MER117 DNA MER1_type -82 115 6 227 243 84 28 chr12 28411369 28411476 -115374979 - MER103 DNA DNA -52 114 2 279 0 0 0 chr12 28412056 28412087 -115374368 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 28412169 28412200 -115374255 + AT_rich Low_complexity Low_complexity 1 31 0 529 158 0 0 chr12 28412460 28412542 -115373913 - AluSg/x SINE Alu -23 287 206 892 246 33 0 chr12 28412708 28412891 -115373564 + MER5A DNA MER1_type 1 189 0 1078 129 0 148 chr12 28413680 28413936 -115372519 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr12 28414063 28414084 -115372371 + (TC)n Simple_repeat Simple_repeat 1 21 0 244 364 40 35 chr12 28414105 28414333 -115372122 + L2 LINE L2 964 1192 -2122 2212 159 16 16 chr12 28414430 28414795 -115371660 - MLT1A1 LTR MaLR 0 365 1 229 82 41 20 chr12 28415062 28415111 -115371344 + A-rich Low_complexity Low_complexity 5 54 0 1079 178 0 0 chr12 28415663 28415826 -115370629 + FRAM SINE Alu 1 163 -3 214 195 0 0 chr12 28416087 28416128 -115370327 + T-rich Low_complexity Low_complexity 1 41 0 1028 325 188 12 chr12 28416266 28417155 -115369300 + L2 LINE L2 1456 2500 -814 3837 183 30 26 chr12 28417251 28419516 -115366939 + L1MA4 LINE L1 6 2260 -4222 2045 142 3 7 chr12 28419516 28419819 -115366636 + AluJb SINE Alu 1 302 -10 3837 183 30 26 chr12 28419819 28421150 -115365305 + L1MA4 LINE L1 2260 3584 -2898 1601 162 22 67 chr12 28421150 28421464 -115364991 - AluJb SINE Alu -12 300 1 3837 183 30 26 chr12 28421464 28423744 -115362711 + L1MA4 LINE L1 3584 6185 -297 363 171 57 0 chr12 28423757 28423845 -115362610 + L1MB3 LINE L1 6087 6179 -4 832 158 73 0 chr12 28423851 28424016 -115362439 - MER53 DNA DNA -12 177 1 1146 185 56 85 chr12 28424258 28424434 -115362021 - MLT1A2 LTR MaLR 0 432 252 2283 126 0 0 chr12 28424434 28424744 -115361711 - AluSg SINE Alu 0 310 1 1146 185 56 85 chr12 28424744 28425028 -115361427 - MLT1A2 LTR MaLR -180 252 1 278 184 20 0 chr12 28425121 28425170 -115361285 + MER110 LTR ERV1 354 403 -88 1048 193 11 0 chr12 28425277 28425464 -115360991 - MER5A DNA MER1_type 0 189 1 321 202 26 114 chr12 28425464 28425578 -115360877 - MER5B DNA MER1_type -74 104 1 339 313 53 34 chr12 28425589 28425797 -115360658 + L2 LINE L2 2672 2883 -431 488 187 140 57 chr12 28425948 28426018 -115360437 + MER5A DNA MER1_type 4 67 -122 1675 126 112 4 chr12 28426018 28426287 -115360168 + AluJb SINE Alu 1 298 -14 488 187 140 57 chr12 28426287 28426385 -115360070 + MER5A DNA MER1_type 67 189 0 408 320 96 32 chr12 28426387 28426637 -115359818 + L2 LINE L2 3007 3272 0 424 299 65 23 chr12 28426650 28426877 -115359578 + MIR SINE MIR 16 248 -14 700 222 0 0 chr12 28429690 28429816 -115356639 + MER82 DNA MER2_type 1 126 -527 1062 223 100 4 chr12 28429966 28430195 -115356260 + MER82 DNA MER2_type 116 366 -287 499 256 70 35 chr12 28430166 28430338 -115356117 + MER82 DNA MER2_type 470 647 -6 * 382 202 18 44 chr12 28430718 28430762 -115355693 - L1MA4A LINE L1 -2 6301 6258 1089 149 25 45 chr12 28430762 28431035 -115355420 - L1PB4 LINE L1 -26 6130 5683 1621 218 7 0 chr12 28431035 28431329 -115355126 - AluJo SINE Alu -16 296 1 1089 149 25 45 chr12 28431329 28431413 -115355042 - L1PB4 LINE L1 -473 5683 5599 344 218 90 58 chr12 28432367 28432523 -115353932 - L1ME4a LINE L1 0 6121 5961 1790 169 4 0 chr12 28432547 28432826 -115353629 - AluJb SINE Alu -32 280 1 3085 60 0 3 chr12 28433118 28433482 -115352973 - L1PA7 LINE L1 0 6154 5792 253 276 126 0 chr12 28433483 28433570 -115352885 - L1ME4a LINE L1 -293 5828 5731 383 271 103 19 chr12 28433869 28434024 -115352431 - L1ME4a LINE L1 -391 5730 5563 325 216 52 169 chr12 28434124 28434471 -115351984 + L1ME4a LINE L1 5618 5881 -240 2179 103 3 19 chr12 28434471 28434782 -115351673 + AluSp SINE Alu 1 306 -7 325 216 52 169 chr12 28434782 28434971 -115351484 + L1ME4a LINE L1 5881 6091 -30 845 147 0 0 chr12 28435010 28435126 -115351329 - FLAM_A SINE Alu -17 116 1 2158 124 14 65 chr12 28435302 28435657 -115350798 + MER1B DNA MER1_type 1 337 0 803 206 116 0 chr12 28435764 28435919 -115350536 + MER45A DNA AcHobo 6 178 0 258 286 0 0 chr12 28435960 28436023 -115350432 - MIR SINE MIR -50 212 150 28 0 0 0 chr12 28436718 28436746 -115349709 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 28436865 28436897 -115349558 + AT_rich Low_complexity Low_complexity 1 32 0 838 259 123 45 chr12 28437076 28437146 -115349309 - MLT1J LTR MaLR -25 486 423 2369 80 0 7 chr12 28437146 28437448 -115349007 + AluSx SINE Alu 1 300 -12 2547 63 0 0 chr12 28437448 28437749 -115348706 + AluY SINE Alu 1 301 -10 2730 116 9 35 chr12 28437759 28438181 -115348274 + L1PA15 LINE L1 5754 6164 -1 838 259 123 45 chr12 28438181 28438538 -115347917 - MLT1J LTR MaLR -96 415 13 23 33 0 0 chr12 28438587 28438617 -115347838 + AT_rich Low_complexity Low_complexity 1 30 0 512 276 37 0 chr12 28438653 28438787 -115347668 + MIR SINE MIR 98 236 -26 2776 110 28 25 chr12 28438792 28439229 -115347226 - Tigger2 DNA MER2_type -1 2717 2280 395 174 0 0 chr12 28439227 28439296 -115347159 - Tigger2 DNA MER2_type -2649 69 1 * 944 114 25 32 chr12 28439588 28439746 -115346709 + MER2 DNA MER2_type 53 209 -136 2146 108 21 0 chr12 28439799 28440087 -115346368 - L1PA15 LINE L1 -7 6158 5865 277 331 41 8 chr12 28441075 28441196 -115345259 - MIR SINE MIR -43 219 95 2325 102 0 6 chr12 28441792 28442107 -115344348 - AluSq SINE Alu 0 313 1 2114 128 0 26 chr12 28442967 28443280 -115343175 + AluJb SINE Alu 1 305 -7 2490 69 0 25 chr12 28443282 28443599 -115342856 + AluY SINE Alu 3 311 0 203 238 0 0 chr12 28443685 28443727 -115342728 + MIR SINE MIR 15 56 -206 423 295 132 26 chr12 28444179 28444406 -115342049 - MIR SINE MIR -9 253 3 2149 105 34 0 chr12 28444680 28444976 -115341479 + AluSx SINE Alu 1 306 -6 345 246 164 82 chr12 28445930 28446101 -115340354 - MER5A DNA MER1_type -1 188 4 439 268 23 91 chr12 28446240 28446460 -115339995 + MIR SINE MIR 37 241 -21 280 321 105 19 chr12 28446590 28446752 -115339703 - MIR SINE MIR -74 188 13 1187 224 5 0 chr12 28446813 28447032 -115339423 - MER58A DNA MER1_type 0 224 5 838 148 31 0 chr12 28447090 28447218 -115339237 - MER3 DNA MER1_type -77 132 1 354 333 65 25 chr12 28447273 28447436 -115339019 + MIR SINE MIR 43 212 -50 575 270 36 16 chr12 28448428 28448676 -115337779 + L1ME LINE L1 5523 5775 -346 1173 282 48 27 chr12 28450166 28450726 -115335729 + L1MC4a LINE L1 5320 5891 -1917 410 242 51 80 chr12 28451856 28452113 -115334342 - MLT1C LTR MaLR -198 269 18 590 268 88 26 chr12 28452646 28453034 -115333421 - L1MC4 LINE L1 -91 7951 7540 25 51 0 0 chr12 28453871 28453910 -115332545 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 28454229 28454250 -115332205 + AT_rich Low_complexity Low_complexity 1 21 0 267 185 31 15 chr12 28454370 28454435 -115332020 - L1M LINE L1 -972 5372 5307 8755 205 38 9 chr12 28454445 28457472 -115328983 - L1 LINE L1 -3036 4172 1054 788 294 115 23 chr12 28457472 28457993 -115328462 - L1M2b LINE L1 -5587 1622 1054 1963 153 9 168 chr12 28457993 28458095 -115328360 - MLT2B3 LTR ERVL 0 554 437 2676 96 3 8 chr12 28458095 28458461 -115327994 + THE1B LTR MaLR 1 364 0 1963 153 9 168 chr12 28458461 28459017 -115327438 - MLT2B3 LTR ERVL -117 437 1 2526 153 16 19 chr12 28459044 28459469 -115326986 + MSTB LTR MaLR 3 426 0 2122 167 146 0 chr12 28459490 28459956 -115326499 - L1M2b LINE L1 -6494 715 182 1665 250 32 66 chr12 28459955 28460819 -115325636 - L1MEc LINE L1 -2432 3783 2949 * 1985 130 3 23 chr12 28460844 28461143 -115325312 - AluSx SINE Alu -19 293 1 1751 219 17 33 chr12 28461144 28461277 -115325178 - L1MEc LINE L1 -3252 2963 2829 1919 158 14 0 chr12 28461277 28461569 -115324886 - AluJb SINE Alu -16 296 1 1751 219 17 33 chr12 28461569 28461955 -115324500 - L1MEc LINE L1 -3386 2829 2452 1775 160 7 23 chr12 28461956 28462263 -115324192 - AluJo SINE Alu -6 306 5 3850 271 55 49 chr12 28462313 28462651 -115323804 - L1MEc LINE L1 -4352 2044 1710 2050 99 56 0 chr12 28462651 28462935 -115323520 + AluSx SINE Alu 1 300 -12 3850 271 55 49 chr12 28462935 28463201 -115323254 - L1MEc LINE L1 -4686 1710 1447 1693 93 0 0 chr12 28463201 28463406 -115323049 + AluSc SINE Alu 88 292 -17 3850 271 55 49 chr12 28463406 28463966 -115322489 - L1MEc LINE L1 -4949 1447 892 2135 106 22 26 chr12 28463966 28464278 -115322177 - AluSx SINE Alu -1 311 1 3850 271 55 49 chr12 28464278 28465107 -115321348 - L1MEc LINE L1 -5504 892 37 392 350 0 8 chr12 28465167 28465290 -115321165 + L2 LINE L2 3189 3310 -3 4084 212 41 24 chr12 28465437 28466756 -115319699 - L1MD2 LINE L1 -2 6357 5015 2274 123 0 0 chr12 28467582 28467883 -115318572 - AluSx SINE Alu -11 301 1 1713 206 34 30 chr12 28468626 28469080 -115317375 + L1ME1 LINE L1 5722 6334 0 1717 155 0 27 chr12 28469182 28469478 -115316977 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr12 28469653 28469674 -115316781 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 131 77 chr12 28470094 28470224 -115316231 + L2 LINE L2 3173 3309 -4 1906 132 10 20 chr12 28470242 28470538 -115315917 - AluSx SINE Alu -17 295 3 327 309 115 26 chr12 28470583 28470774 -115315681 - L1ME4a LINE L1 -79 6042 5835 902 109 0 0 chr12 28470947 28471066 -115315389 + AluJb SINE Alu 1 119 -193 5791 78 5 2 chr12 28471066 28471879 -115314576 + L1PA14 LINE L1 5347 6161 0 1226 162 5 5 chr12 28471885 28472076 -115314379 + AluJb SINE Alu 104 294 -18 2159 87 0 16 chr12 28472997 28473342 -115313113 - L1PA7 LINE L1 0 6154 5851 193 301 0 41 chr12 28473478 28473551 -115312904 + L2 LINE L2 3000 3069 -244 227 288 163 38 chr12 28473731 28473915 -115312540 + L2 LINE L2 3106 3312 -1 293 261 9 0 chr12 28474842 28474953 -115311502 + (TA)n Simple_repeat Simple_repeat 1 112 0 287 118 0 73 chr12 28475235 28475303 -115311152 - L1M LINE L1 -836 5338 5276 1640 168 41 14 chr12 28476126 28476418 -115310037 + AluJb SINE Alu 1 300 -12 4393 166 18 20 chr12 28477374 28478267 -115308188 + L1MB7 LINE L1 5272 6162 -22 21 82 0 0 chr12 28478673 28478722 -115307733 + AT_rich Low_complexity Low_complexity 1 49 0 2608 49 0 0 chr12 28479803 28480111 -115306344 + AluY SINE Alu 1 308 -3 227 328 46 38 chr12 28480398 28480529 -115305926 - MIR3 SINE MIR -17 191 60 332 134 30 30 chr12 28481453 28481520 -115304935 + LTR67 LTR ERVL 491 557 0 28 29 0 0 chr12 28481589 28481624 -115304831 + AT_rich Low_complexity Low_complexity 1 35 0 264 294 50 59 chr12 28482106 28482204 -115304251 - MER5B DNA MER1_type -15 163 65 2353 84 3 0 chr12 28482204 28482501 -115303954 - AluSq SINE Alu -15 298 1 264 294 50 59 chr12 28482501 28482521 -115303934 - MER5B DNA MER1_type -113 65 46 281 330 24 30 chr12 28483056 28483228 -115303227 - MER5A DNA MER1_type -1 188 6 603 294 37 9 chr12 28484352 28484566 -115301889 + LTR16A LTR ERVL 225 444 -6 924 109 45 9 chr12 28484574 28484839 -115301616 - MER89 LTR ERV1 0 559 240 232 194 129 0 chr12 28484851 28484913 -115301542 + MIR SINE MIR 123 192 -70 1383 263 101 30 chr12 28485075 28485619 -115300836 + L2 LINE L2 2447 3036 -277 3310 164 46 5 chr12 28485619 28486270 -115300185 + L1MB7 LINE L1 5465 6142 -42 467 234 86 76 chr12 28486270 28486467 -115299988 + L2 LINE L2 3023 3221 -92 761 264 42 19 chr12 28486679 28486891 -115299564 - MIR SINE MIR -26 236 20 366 341 41 8 chr12 28486906 28487029 -115299426 + L2 LINE L2 3140 3266 -6 959 200 0 0 chr12 28487031 28487201 -115299254 + FRAM SINE Alu 1 169 -7 524 241 35 0 chr12 28487730 28487871 -115298584 - MLT1L LTR MaLR -5 610 465 1465 175 0 105 chr12 28488264 28488596 -115297859 - AluJb SINE Alu -4 298 2 416 204 76 23 chr12 28488641 28488773 -115297682 - L1MC4 LINE L1 -27 8015 7877 186 43 0 0 chr12 28488786 28488809 -115297646 + (TC)n Simple_repeat Simple_repeat 2 24 0 1111 123 39 0 chr12 28488809 28488963 -115297492 - AluJb SINE Alu -23 289 130 216 212 0 0 chr12 28488964 28489030 -115297425 + T-rich Low_complexity Low_complexity 1 66 0 1720 231 36 10 chr12 28489071 28489573 -115296882 - L1MC4 LINE L1 -197 7845 7331 325 276 133 8 chr12 28489722 28489882 -115296573 - MIR3 SINE MIR -64 144 7 229 254 16 131 chr12 28490392 28490514 -115295941 + MIR SINE MIR 25 132 -76 573 114 86 0 chr12 28490625 28490730 -115295725 + MLT1B LTR MaLR 2 115 -275 30 59 0 0 chr12 28490730 28490781 -115295674 + AT_rich Low_complexity Low_complexity 1 51 0 828 183 17 23 chr12 28491555 28491797 -115294658 + MLT1B LTR MaLR 95 390 0 469 184 9 79 chr12 28491799 28491830 -115294625 + MIR SINE MIR 87 119 -143 801 224 35 11 chr12 28491830 28492004 -115294451 - MER45A DNA AcHobo 0 178 1 469 184 9 79 chr12 28492004 28492086 -115294369 + MIR SINE MIR 119 192 -70 1939 160 32 8 chr12 28492956 28493332 -115293123 + LTR45B LTR ERV1 1 385 -104 2165 81 34 30 chr12 28493597 28493895 -115292560 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 28494148 28494177 -115292278 + AT_rich Low_complexity Low_complexity 1 29 0 495 217 96 0 chr12 28494644 28494759 -115291696 + MIR SINE MIR 23 148 -114 1348 112 8 97 chr12 28494795 28495054 -115291401 - MER46A DNA MER2_type 0 236 1 184 286 95 0 chr12 28495707 28495770 -115290685 - MIR SINE MIR -115 147 79 2186 111 3 3 chr12 28495991 28496288 -115290167 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 28497311 28497332 -115289123 + AT_rich Low_complexity Low_complexity 1 21 0 235 355 0 11 chr12 28498075 28498168 -115288287 - MIR SINE MIR -14 248 157 368 234 157 49 chr12 28498627 28498789 -115287666 + MIR SINE MIR 18 192 -64 428 321 64 9 chr12 28498807 28498857 -115287598 + L3 LINE CR1 1331 1377 -200 2307 69 3 20 chr12 28498857 28499160 -115287295 - AluSp SINE Alu -15 298 1 428 321 64 9 chr12 28499160 28499327 -115287128 + L3 LINE CR1 1377 1560 -17 490 225 38 41 chr12 28500553 28500710 -115285745 - MIR SINE MIR -62 146 30 325 306 113 31 chr12 28501246 28501406 -115285049 + MIR SINE MIR 20 192 -70 2041 119 17 3 chr12 28501490 28501792 -115284663 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr12 28502729 28502762 -115283693 + GC_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 28504183 28504207 -115282248 + (A)n Simple_repeat Simple_repeat 1 24 0 2288 101 3 7 chr12 28505219 28505527 -115280928 + AluSq SINE Alu 1 307 -6 1802 153 23 7 chr12 28505911 28506211 -115280244 - AluJb SINE Alu -7 305 1 2055 128 0 0 chr12 28506605 28506914 -115279541 - AluSx SINE Alu 0 311 3 2255 102 0 0 chr12 28508079 28508364 -115278091 + AluSx SINE Alu 1 285 -27 662 251 134 73 chr12 28509241 28509719 -115276736 + MLT1J LTR MaLR 1 507 -4 548 266 32 13 chr12 28509792 28509950 -115276505 + MIR SINE MIR 28 188 -74 1972 117 7 30 chr12 28509971 28510269 -115276186 - AluSx SINE Alu -21 291 1 433 217 286 32 chr12 28510572 28510761 -115275694 + MIR SINE MIR 5 241 -21 917 169 91 0 chr12 28511677 28511831 -115274624 - FAM SINE Alu -7 168 1 648 232 173 36 chr12 28511987 28512207 -115274248 - MIR SINE MIR 0 262 13 387 309 99 20 chr12 28512278 28512530 -115273925 - L2 LINE L2 -997 2317 2046 4590 173 59 73 chr12 28513758 28514044 -115272411 - MER45B DNA AcHobo -543 1038 750 1525 180 56 0 chr12 28514044 28514351 -115272104 - AluJb SINE Alu 0 324 3 4590 173 59 73 chr12 28514351 28514930 -115271525 - MER45B DNA AcHobo -831 750 186 2552 131 46 10 chr12 28514930 28515341 -115271114 - MSTB LTR MaLR 0 426 1 4590 173 59 73 chr12 28515341 28515516 -115270939 - MER45B DNA AcHobo -1395 186 10 2280 89 0 3 chr12 28515794 28516085 -115270370 - AluSg SINE Alu -20 290 1 321 175 188 0 chr12 28517087 28517167 -115269288 - MIR SINE MIR -49 213 119 197 235 0 20 chr12 28517268 28517319 -115269136 + L2 LINE L2 3261 3310 -3 207 297 0 69 chr12 28517480 28517524 -115268931 + MIR SINE MIR 127 172 -90 1193 187 9 9 chr12 28517524 28517743 -115268712 + MER20 DNA MER1_type 1 219 0 207 297 0 69 chr12 28517743 28517799 -115268656 + MIR SINE MIR 172 220 -42 354 285 38 32 chr12 28518359 28518517 -115267938 - L1ME4a LINE L1 -1 6120 5962 1102 150 39 0 chr12 28518719 28518899 -115267556 - AluJo SINE Alu -14 298 112 262 191 0 0 chr12 28518899 28518941 -115267514 + MER20 DNA MER1_type 178 219 0 333 203 100 0 chr12 28519126 28519198 -115267257 - AluJ/FLAM SINE Alu -236 66 1 334 279 123 54 chr12 28519442 28519718 -115266737 - L1M4 LINE L1 -746 5400 5106 439 312 69 37 chr12 28520602 28520742 -115265713 + MIR SINE MIR 29 163 -99 1281 162 162 55 chr12 28520742 28521051 -115265404 - MER2 DNA MER2_type -2 342 1 439 312 69 37 chr12 28521051 28521070 -115265385 + MIR SINE MIR 163 180 -82 541 105 13 0 chr12 28521070 28521146 -115265309 + MADE1 DNA Mariner 3 79 -1 439 312 69 37 chr12 28521146 28521174 -115265281 + MIR SINE MIR 180 223 -39 1899 168 3 7 chr12 28522535 28522832 -115263623 - AluJo SINE Alu -12 300 5 7555 48 11 1 chr12 28522981 28524048 -115262407 + L1PA7 LINE L1 5077 6152 -2 272 248 172 27 chr12 28524843 28525027 -115261428 + MIR SINE MIR 2 216 -46 1822 139 45 7 chr12 28525385 28525672 -115260783 + AluJb SINE Alu 1 298 -14 824 255 153 25 chr12 28526172 28526576 -115259879 - LTR16A1 LTR ERVL -1 456 1 187 283 0 0 chr12 28528614 28528660 -115257795 + MIR SINE MIR 12 57 -205 199 156 0 0 chr12 28529248 28529280 -115257175 - MIR SINE MIR -150 112 81 227 174 0 65 chr12 28529307 28529353 -115257102 - HsTC2 DNA Tc2 -1816 82 40 190 311 0 16 chr12 28529377 28529438 -115257017 - MIR SINE MIR -183 79 20 35 0 0 0 chr12 28529626 28529661 -115256794 + AT_rich Low_complexity Low_complexity 1 35 0 305 248 78 78 chr12 28529674 28529827 -115256628 - MIR SINE MIR -96 166 14 314 256 35 12 chr12 28530651 28530737 -115255718 + MIR3 SINE MIR 113 200 -8 2696 106 132 2 chr12 28531339 28531765 -115254690 - MER31A LTR ERV1 -1 484 4 202 143 29 0 chr12 28532324 28532359 -115254096 + MER91B DNA MER1_type 32 67 -123 827 311 112 49 chr12 28533081 28533673 -115252782 + L3 LINE CR1 694 1322 -255 2165 88 17 10 chr12 28535893 28536187 -115250268 - AluY SINE Alu -15 296 1 273 29 0 0 chr12 28536912 28536946 -115249509 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 252 0 0 0 chr12 28537122 28537150 -115249305 + (CA)n Simple_repeat Simple_repeat 2 29 0 324 48 0 0 chr12 28537251 28537293 -115249162 + (CA)n Simple_repeat Simple_repeat 2 43 0 1567 175 25 41 chr12 28537508 28537822 -115248633 - AluJo SINE Alu -3 309 1 2220 87 10 0 chr12 28537833 28538121 -115248334 - AluSg SINE Alu -19 291 1 351 286 193 33 chr12 28539240 28539453 -115247002 - MIR SINE MIR -7 255 9 642 283 45 18 chr12 28540181 28540463 -115245992 + L2 LINE L2 2720 3011 -302 1097 160 15 39 chr12 28540498 28540704 -115245751 + AluJo SINE Alu 84 284 -28 504 225 190 20 chr12 28540736 28540936 -115245519 + L2 LINE L2 3079 3312 -1 357 283 126 40 chr12 28541336 28541534 -115244921 + MIR SINE MIR 20 234 -28 533 204 26 86 chr12 28541651 28541803 -115244652 + MLT1E3 LTR MaLR 62 204 -420 1381 148 0 62 chr12 28541814 28542070 -115244385 + AluY SINE Alu 1 240 -71 398 244 67 28 chr12 28542258 28542438 -115244017 - L1ME4a LINE L1 -11 6110 5924 295 292 0 0 chr12 28542827 28542899 -115243556 + (CA)n Simple_repeat Simple_repeat 1 72 0 2081 92 7 14 chr12 28543167 28543460 -115242995 + AluY SINE Alu 1 291 -20 2032 78 7 11 chr12 28543949 28544218 -115242237 - AluY SINE Alu 0 311 44 302 264 23 62 chr12 28544290 28544419 -115242036 + L1ME4a LINE L1 5984 6107 -14 388 320 20 20 chr12 28544430 28544577 -115241878 + MIR SINE MIR 8 154 -108 2158 108 0 16 chr12 28545031 28545337 -115241118 + AluSg SINE Alu 1 301 -9 330 224 95 34 chr12 28545541 28545688 -115240767 + Charlie7 DNA MER1_type 2457 2612 0 2447 76 0 3 chr12 28546913 28547215 -115239240 - AluSg SINE Alu -9 301 1 654 248 139 18 chr12 28548212 28548486 -115237969 - MER102b DNA MER1_type 0 341 35 681 245 92 15 chr12 28549698 28549894 -115236561 - MIR SINE MIR -42 220 10 1143 244 59 60 chr12 28550182 28550728 -115235727 + L1MC5 LINE L1 7373 7917 -44 263 246 56 0 chr12 28551428 28551512 -115234943 + MIR SINE MIR 100 186 -22 1670 168 56 7 chr12 28551938 28552224 -115234231 - AluJo SINE Alu -12 300 1 237 132 0 0 chr12 28552994 28553032 -115233423 + (TG)n Simple_repeat Simple_repeat 1 38 0 2274 234 66 20 chr12 28554982 28555575 -115230880 + MER82 DNA MER2_type 1 620 -33 202 216 78 0 chr12 28556146 28556197 -115230258 + L2 LINE L2 3218 3272 0 194 314 0 47 chr12 28556537 28556623 -115229832 - L2 LINE L2 -5 3308 3227 257 366 81 14 chr12 28558776 28558997 -115227458 - L2 LINE L2 -337 2977 2742 1587 179 19 35 chr12 28559030 28559343 -115227112 + AluJo SINE Alu 4 311 -1 670 270 73 65 chr12 28560029 28560277 -115226178 + MIR SINE MIR 2 251 -11 1062 181 15 20 chr12 28560416 28560615 -115225840 - MER58A DNA MER1_type 0 224 27 23 0 0 0 chr12 28562539 28562562 -115223893 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 0 0 chr12 28563121 28563166 -115223289 - L2 LINE L2 0 3313 3269 262 202 12 36 chr12 28563253 28563337 -115223118 + GA-rich Low_complexity Low_complexity 4 85 0 220 222 0 0 chr12 28564034 28564079 -115222376 - MIR SINE MIR 0 262 218 206 355 138 0 chr12 28564120 28564272 -115222183 - MIR SINE MIR -19 243 71 248 373 42 7 chr12 28564476 28564618 -115221837 + MIR3 SINE MIR 35 181 -27 678 256 37 0 chr12 28564775 28564939 -115221516 - MIR SINE MIR -77 185 16 1823 171 7 0 chr12 28565094 28565387 -115221068 + AluSx SINE Alu 1 295 -17 2568 43 0 7 chr12 28566017 28566321 -115220134 + AluY SINE Alu 1 302 -9 398 208 133 17 chr12 28566397 28566517 -115219938 - L1MC4 LINE L1 -91 7951 7818 931 261 104 63 chr12 28566574 28567065 -115219390 - L1MC4 LINE L1 -364 7678 7168 590 161 0 0 chr12 28568034 28568121 -115218334 - AluJ/FLAM SINE Alu -224 88 2 234 339 101 77 chr12 28568827 28568849 -115217606 - L2 LINE L2 -20 3252 3232 2132 128 0 0 chr12 28568849 28569153 -115217302 - AluSx SINE Alu -8 304 1 234 339 101 77 chr12 28569153 28569416 -115217039 - L2 LINE L2 -40 3232 2960 210 327 18 18 chr12 28570032 28570142 -115216313 - L2 LINE L2 -2959 355 246 386 246 65 29 chr12 28570321 28570459 -115215996 - MIR SINE MIR -50 212 70 2012 116 41 3 chr12 28571535 28571828 -115214627 + AluSq SINE Alu 1 304 -9 180 111 0 0 chr12 28572758 28572785 -115213670 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2385 110 0 0 chr12 28572845 28573155 -115213300 - AluSx SINE Alu -2 310 1 398 244 67 28 chr12 28573341 28573521 -115212934 - L1ME4a LINE L1 -11 6110 5924 240 300 135 20 chr12 28573630 28573830 -115212625 - L1ME4a LINE L1 -362 5759 5537 204 278 0 0 chr12 28573910 28573982 -115212473 + (CA)n Simple_repeat Simple_repeat 1 72 0 2242 75 4 0 chr12 28574250 28574528 -115211927 + AluSp SINE Alu 1 279 -34 297 0 0 0 chr12 28574530 28574563 -115211892 + (CAA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr12 28574564 28574600 -115211855 + (TA)n Simple_repeat Simple_repeat 2 37 0 333 0 0 0 chr12 28574749 28574786 -115211669 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 35 0 35 chr12 28575179 28575208 -115211247 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 974 174 26 0 chr12 28575211 28575366 -115211089 - FRAM SINE Alu -24 152 1 707 274 24 59 chr12 28575368 28575623 -115210832 - MIR SINE MIR -8 254 9 2191 63 44 0 chr12 28575830 28576131 -115210324 - AluSg SINE Alu 0 313 1 2040 119 3 3 chr12 28576462 28576782 -115209673 - AluSq SINE Alu 0 320 1 2746 96 14 16 chr12 28576833 28577197 -115209258 - THE1B LTR MaLR 0 364 2 351 0 0 0 chr12 28577216 28577255 -115209200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1175 175 45 135 chr12 28577783 28578184 -115208271 + MLT2B1 LTR ERVL 1 365 -49 216 135 0 0 chr12 28578189 28578226 -115208229 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 261 198 5 0 chr12 28578247 28578308 -115208147 + MLT2B1 LTR ERVL 391 520 0 1831 229 61 2 chr12 28578363 28578822 -115207633 + L1MC4a LINE L1 7323 7808 0 2248 95 10 3 chr12 28578833 28579129 -115207326 + AluSq SINE Alu 1 298 -15 319 106 0 0 chr12 28579452 28579499 -115206956 + L1MB3 LINE L1 6099 6145 -38 1489 176 48 14 chr12 28579519 28579809 -115206646 - L1MA6 LINE L1 -2 6298 5999 848 201 85 0 chr12 28580556 28580745 -115205710 - MER3 DNA MER1_type -4 205 1 1312 143 76 4 chr12 28580951 28581189 -115205266 - L1MA9 LINE L1 -5 6307 6053 194 287 185 9 chr12 28581897 28582005 -115204450 + MIR SINE MIR 67 193 -69 214 125 25 25 chr12 28582208 28582248 -115204207 + L2 LINE L2 3138 3177 -95 24 32 0 0 chr12 28583001 28583032 -115203423 + AT_rich Low_complexity Low_complexity 1 31 0 2448 110 22 30 chr12 28583426 28583791 -115202664 - THE1B LTR MaLR 0 364 3 361 262 16 25 chr12 28583990 28584112 -115202343 + L1ME1 LINE L1 5935 6055 -111 502 186 242 63 chr12 28584112 28584364 -115202091 - MER33 DNA MER1_type 0 324 28 398 202 39 39 chr12 28584393 28584497 -115201958 + L1ME1 LINE L1 6061 6164 -2 213 325 278 0 chr12 28585223 28585374 -115201081 + L3 LINE CR1 691 883 -694 324 331 63 16 chr12 28585640 28585767 -115200688 - MER5A DNA MER1_type -50 139 7 1169 154 50 11 chr12 28586157 28586339 -115200116 - MER5A DNA MER1_type 0 189 1 197 0 71 0 chr12 28587556 28587584 -115198871 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 849 333 105 28 chr12 28587928 28588472 -115197983 + L2 LINE L2 2323 2908 -406 321 329 205 0 chr12 28588642 28588803 -115197652 - MER91A DNA MER1_type -1 195 2 22 0 0 0 chr12 28588919 28588941 -115197514 + AT_rich Low_complexity Low_complexity 1 22 0 1215 180 40 68 chr12 28589933 28590255 -115196200 - MLT1B LTR MaLR -77 313 1 297 0 0 0 chr12 28590463 28590496 -115195959 + (TC)n Simple_repeat Simple_repeat 1 33 0 1927 128 3 50 chr12 28591006 28591326 -115195129 - AluJb SINE Alu -7 305 1 468 0 0 0 chr12 28591604 28591656 -115194799 + (CAT)n Simple_repeat Simple_repeat 1 52 0 2309 102 3 0 chr12 28592102 28592405 -115194050 + AluSx SINE Alu 4 307 -5 1837 173 0 16 chr12 28592773 28593079 -115193376 + AluJb SINE Alu 1 301 -11 215 265 61 0 chr12 28594314 28594363 -115192092 - MIR3 SINE MIR -46 162 111 262 246 0 15 chr12 28594630 28594695 -115191760 + MIR SINE MIR 91 154 -108 216 244 0 0 chr12 28594755 28594822 -115191633 + polypyrimidine Low_complexity Low_complexity 1 67 0 219 357 18 40 chr12 28595461 28595688 -115190767 - L2 LINE L2 -1893 1421 1200 227 318 0 0 chr12 28596100 28596163 -115190292 + L2 LINE L2 3246 3308 -5 1322 177 3 5 chr12 28596166 28596460 -115189995 + MER2 DNA MER2_type 1 344 -1 3133 109 56 56 chr12 28596903 28597509 -115188946 + MER4B LTR ERV1 1 774 -5 1974 161 45 3 chr12 28597810 28598140 -115188315 + MER2 DNA MER2_type 1 344 0 277 241 241 9 chr12 28598281 28598389 -115188066 + L2 LINE L2 2405 2537 -777 533 205 41 8 chr12 28598393 28598515 -115187940 + L1ME2 LINE L1 6031 6156 -8 274 171 13 13 chr12 28598586 28598662 -115187793 + (TA)n Simple_repeat Simple_repeat 1 76 0 914 264 75 53 chr12 28598717 28599223 -115187232 + L2 LINE L2 2557 3068 -245 794 220 89 14 chr12 28599268 28599482 -115186973 + MIR SINE MIR 9 238 -24 542 216 16 135 chr12 28599500 28599745 -115186710 + L2 LINE L2 3098 3313 0 1190 182 98 0 chr12 28599798 28600001 -115186454 - MER58A DNA MER1_type -1 223 1 239 194 148 83 chr12 28600955 28601063 -115185392 - MER5C DNA MER1_type 0 324 210 389 259 93 9 chr12 28601090 28601198 -115185257 - MER5C DNA MER1_type -201 123 7 384 181 112 52 chr12 28601331 28601447 -115185008 + L2 LINE L2 3188 3310 -3 1730 174 0 29 chr12 28602095 28602411 -115184044 + AluJo SINE Alu 1 307 -5 1602 144 91 4 chr12 28603668 28603931 -115182524 + AluJb SINE Alu 3 288 -24 713 215 141 16 chr12 28603945 28604037 -115182418 - L1MC5 LINE L1 -73 7888 7809 186 43 0 0 chr12 28604037 28604060 -115182395 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 713 215 141 16 chr12 28604060 28604223 -115182232 - L1MC5 LINE L1 -152 7809 7601 2305 96 3 22 chr12 28604248 28604560 -115181895 - AluSx SINE Alu -6 306 1 564 161 0 21 chr12 28604579 28604672 -115181783 + FLAM_A SINE Alu 34 124 -18 577 212 7 73 chr12 28605139 28605247 -115181208 - MER5A DNA MER1_type -15 174 77 2230 112 3 0 chr12 28605247 28605542 -115180913 - AluSx SINE Alu -15 297 2 577 212 7 73 chr12 28605542 28605584 -115180871 - MER5A DNA MER1_type -112 77 34 1489 99 22 0 chr12 28605644 28605866 -115180589 - L1MA3 LINE L1 -3 6302 6076 1862 131 32 32 chr12 28606844 28607156 -115179299 - AluJo SINE Alu 0 312 1 513 298 169 11 chr12 28607456 28607735 -115178720 - LTR16C LTR ERVL -44 447 125 822 225 175 21 chr12 28607991 28608276 -115178179 - L1ME2 LINE L1 -52 6112 5784 347 245 66 13 chr12 28608601 28608752 -115177703 - L1MEc LINE L1 -3382 2833 2675 331 204 86 0 chr12 28608788 28608881 -115177574 + L1MEc LINE L1 2148 2248 -4148 745 242 110 11 chr12 28608921 28609284 -115177171 - L1MEc LINE L1 -3608 2607 2209 1223 124 77 0 chr12 28609313 28609522 -115176933 - L1PB3 LINE L1 -6 6148 5924 342 236 94 9 chr12 28609526 28609632 -115176823 - L1MEc LINE L1 -4134 2262 2148 371 211 0 22 chr12 28609644 28609734 -115176721 + FLAM_A SINE Alu 44 131 -2 229 285 73 33 chr12 28610035 28610186 -115176269 + L2 LINE L2 3048 3204 -109 213 259 96 7 chr12 28610195 28610331 -115176124 + MER5C DNA MER1_type 77 321 -3 337 289 144 30 chr12 28611294 28611495 -115174960 + MIR SINE MIR 35 258 -4 189 74 0 0 chr12 28611528 28611555 -115174900 + (TG)n Simple_repeat Simple_repeat 1 27 0 259 194 194 0 chr12 28612373 28612435 -115174020 - MER5A DNA MER1_type -114 75 2 2444 84 0 0 chr12 28612513 28612812 -115173643 - AluSg1 SINE Alu -10 299 1 823 173 45 67 chr12 28612824 28613003 -115173452 - FAM SINE Alu 0 175 1 207 330 65 45 chr12 28613024 28613224 -115173231 + L2 LINE L2 2252 2455 -859 764 81 130 0 chr12 28614303 28614426 -115172029 - MER85 DNA T2_type 0 139 1 1340 247 37 60 chr12 28615350 28615960 -115170495 + L2 LINE L2 2704 3311 -2 192 152 0 0 chr12 28616624 28616657 -115169798 + CT-rich Low_complexity Low_complexity 3 35 0 1360 153 16 4 chr12 28616666 28616920 -115169535 + L1MB3 LINE L1 5925 6181 -2 393 297 50 33 chr12 28617092 28617274 -115169181 + MIR SINE MIR 42 226 -36 1878 86 4 11 chr12 28620345 28620623 -115165832 + LTR17 LTR ERV1 51 326 -454 333 0 0 0 chr12 28620624 28620661 -115165794 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 194 184 0 26 chr12 28620758 28620796 -115165659 + L3 LINE CR1 1540 1576 -1 275 77 0 0 chr12 28621720 28621759 -115164696 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28621965 28622301 -115164154 - L2 LINE L2 0 3272 2898 1524 190 23 36 chr12 28622753 28623058 -115163397 - AluJo SINE Alu -11 301 1 892 167 0 0 chr12 28625083 28625215 -115161240 - FLAM_A SINE Alu -5 137 6 26 30 0 0 chr12 28625327 28625360 -115161095 + AT_rich Low_complexity Low_complexity 1 33 0 2209 102 7 0 chr12 28625677 28625972 -115160483 - AluSx SINE Alu -9 303 7 6476 97 22 2 chr12 28626810 28627812 -115158643 + L1MA2 LINE L1 5271 6297 -7 563 255 71 47 chr12 28627864 28628076 -115158379 + MIR SINE MIR 22 238 -24 2053 123 0 3 chr12 28628221 28628529 -115157926 - AluSx SINE Alu 0 307 1 200 130 22 0 chr12 28628832 28628878 -115157577 + CT-rich Low_complexity Low_complexity 2 48 0 220 186 34 17 chr12 28629442 28629501 -115156954 + MIR SINE MIR 57 116 -146 786 194 0 8 chr12 28629951 28630085 -115156370 - FLAM_C SINE Alu 0 133 1 2187 118 0 3 chr12 28631981 28632286 -115154169 + AluSx SINE Alu 1 304 -8 285 366 0 0 chr12 28636217 28636310 -115150145 + MIR3 SINE MIR 111 203 -5 1830 144 0 85 chr12 28636503 28636843 -115149612 + AluJo SINE Alu 1 311 -1 299 317 10 0 chr12 28636882 28636983 -115149472 + MER5C DNA MER1_type 4 105 -219 221 263 18 0 chr12 28637214 28637271 -115149184 - MIR3 SINE MIR -51 157 100 1282 128 0 62 chr12 28638054 28638265 -115148190 + AluJo SINE Alu 51 248 -64 478 149 23 23 chr12 28638265 28638352 -115148103 + AluJo/FRAM SINE Alu 210 296 -16 799 224 13 0 chr12 28638477 28638629 -115147826 + FRAM SINE Alu 2 155 -21 932 122 0 0 chr12 28638738 28638869 -115147586 - FLAM_C SINE Alu -2 131 1 187 343 90 22 chr12 28640751 28640885 -115145570 - L2 LINE L2 -180 3092 2950 415 327 155 29 chr12 28641063 28641476 -115144979 - L2 LINE L2 -585 2729 2265 489 220 54 119 chr12 28641634 28641970 -115144485 - MLT1H LTR MaLR -113 436 123 2066 142 3 0 chr12 28642236 28642538 -115143917 + AluJb SINE Alu 1 303 -9 224 226 0 0 chr12 28642699 28642752 -115143703 + T-rich Low_complexity Low_complexity 3 55 0 483 302 148 41 chr12 28643340 28643583 -115142872 - L2 LINE L2 -291 2981 2765 2077 120 0 0 chr12 28643583 28643874 -115142581 + AluSx SINE Alu 1 291 -21 483 302 148 41 chr12 28643874 28644216 -115142239 - L2 LINE L2 -507 2765 2317 305 214 136 39 chr12 28644764 28644918 -115141537 - L1ME4a LINE L1 -33 6088 5920 1454 240 172 6 chr12 28646296 28646779 -115139676 - MLT1G1 LTR MaLR -29 566 4 285 244 80 128 chr12 28646794 28647130 -115139325 - MLT1G1-int LTR MaLR -24 1347 1028 305 232 61 0 chr12 28647725 28647807 -115138648 - MLT1G1-int LTR MaLR -1194 541 455 1793 166 14 10 chr12 28649176 28649494 -115136961 + AluJo SINE Alu 2 320 0 231 254 75 75 chr12 28649536 28649670 -115136785 - MIR SINE MIR -82 180 47 743 197 8 0 chr12 28649700 28649832 -115136623 + FLAM_A SINE Alu 1 133 0 2123 141 3 0 chr12 28650467 28650766 -115135689 + AluSx SINE Alu 1 300 -12 1734 163 40 0 chr12 28652989 28653289 -115133166 + L1MB5 LINE L1 5853 6164 -10 1652 159 9 92 chr12 28653489 28653816 -115132639 - AluJo SINE Alu -9 303 4 1171 167 5 9 chr12 28654254 28654464 -115131991 + L1 LINE L1 4890 5098 -1048 2470 86 0 0 chr12 28657255 28657559 -115128896 + AluSg1 SINE Alu 1 304 -5 786 257 119 18 chr12 28659052 28659278 -115127177 + MIR SINE MIR 6 254 -8 387 127 16 0 chr12 28661673 28661736 -115124719 + L1MB7 LINE L1 6106 6169 -15 2220 115 3 7 chr12 28661737 28662042 -115124413 - AluSx SINE Alu -8 304 1 2507 77 0 0 chr12 28662453 28662764 -115123691 - AluY SINE Alu 0 311 1 2162 130 0 0 chr12 28662779 28663086 -115123369 - AluSx SINE Alu -5 307 1 222 313 40 20 chr12 28663326 28663425 -115123030 - MIR SINE MIR -16 246 146 1349 145 52 12 chr12 28663453 28663701 -115122754 - L1MD3 LINE L1 0 7995 7738 283 227 53 0 chr12 28663890 28663965 -115122490 - L1MC4 LINE L1 -1349 6693 6615 395 241 50 57 chr12 28664001 28664142 -115122313 - MIR SINE MIR -105 157 18 1320 137 64 9 chr12 28664338 28664571 -115121884 + L1MD3 LINE L1 7750 7995 0 23 0 0 0 chr12 28664894 28664917 -115121538 + AT_rich Low_complexity Low_complexity 1 23 0 805 178 8 0 chr12 28665433 28665562 -115120893 + AluJo SINE Alu 2 131 -171 1707 174 0 13 chr12 28666478 28666776 -115119679 + AluJb SINE Alu 1 294 -18 223 217 14 72 chr12 28667439 28667508 -115118947 + MIR SINE MIR 19 83 -125 298 232 43 85 chr12 28668028 28668192 -115118263 - TAR1 Satellite telomeric -1832 279 123 3351 137 40 16 chr12 28668218 28668788 -115117667 - LTR60 LTR ERV1 -2 584 1 1129 179 146 19 chr12 28668799 28669011 -115117444 - MER8 DNA MER2_type 0 239 1 586 97 0 0 chr12 28669051 28669123 -115117332 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 850 179 0 65 chr12 28669130 28669298 -115117157 + AluJo SINE Alu 134 290 -22 888 149 0 0 chr12 28669972 28670093 -115116362 + FLAM_A SINE Alu 1 121 -12 626 244 73 0 chr12 28670723 28670887 -115115568 - MIR SINE MIR 0 262 87 23 54 0 0 chr12 28672040 28672077 -115114378 + AT_rich Low_complexity Low_complexity 1 37 0 1960 124 21 3 chr12 28672370 28672653 -115113802 - AluSg SINE Alu -22 288 1 1715 153 3 75 chr12 28672658 28672991 -115113464 - AluJo SINE Alu -3 309 1 2379 77 0 13 chr12 28673798 28674097 -115112358 - AluY SINE Alu -16 295 1 2048 129 10 10 chr12 28674576 28674879 -115111576 + AluJb SINE Alu 1 303 -9 1088 188 0 0 chr12 28676411 28676571 -115109884 + FRAM SINE Alu 1 160 -6 1859 142 25 0 chr12 28677153 28677427 -115109028 + AluJb SINE Alu 23 303 -9 306 247 155 0 chr12 28677803 28677900 -115108555 + MER112 DNA MER1_type 129 240 -20 294 232 265 7 chr12 28678222 28678373 -115108082 + LTR33 LTR ERVL 324 513 -8 202 238 89 79 chr12 28678373 28678454 -115108001 + MIR SINE MIR 116 200 -62 2305 96 23 0 chr12 28678454 28678757 -115107698 + AluSg SINE Alu 1 310 0 202 238 89 79 chr12 28678757 28678776 -115107679 + MIR SINE MIR 200 217 -45 1046 277 70 52 chr12 28679428 28679595 -115106860 - L2 LINE L2 -4 3309 3146 1847 126 7 11 chr12 28679595 28679866 -115106589 + AluSx SINE Alu 16 285 -27 1046 277 70 52 chr12 28679866 28680298 -115106157 - L2 LINE L2 -167 3146 2690 2274 114 0 0 chr12 28680298 28680595 -115105860 + AluSx SINE Alu 1 297 -15 1046 277 70 52 chr12 28680595 28680810 -115105645 - L2 LINE L2 -623 2690 2480 218 176 20 0 chr12 28681526 28681577 -115104878 + GA-rich Low_complexity Low_complexity 2 53 0 2413 83 0 3 chr12 28681719 28682031 -115104424 + AluY SINE Alu 1 311 0 215 278 231 0 chr12 28682580 28682688 -115103767 + MIR SINE MIR 17 149 -113 3965 137 29 2 chr12 28682697 28683283 -115103172 - MER7C DNA MER2_type 0 602 1 26 0 0 0 chr12 28683621 28683647 -115102808 + AT_rich Low_complexity Low_complexity 1 26 0 432 269 39 77 chr12 28683774 28683956 -115102499 + MER5B DNA MER1_type 1 175 -3 3125 195 128 29 chr12 28683970 28684839 -115101616 - LTR28 LTR ERV1 0 1020 5 253 250 0 0 chr12 28684841 28684901 -115101554 - L1ME LINE L1 -325 5796 5737 2322 114 0 0 chr12 28684999 28685306 -115101149 + AluSx SINE Alu 1 307 -5 928 126 28 0 chr12 28685328 28685471 -115100984 + L1MA3 LINE L1 6159 6305 0 733 162 0 8 chr12 28685559 28685676 -115100779 - MER45A DNA AcHobo 0 178 63 1944 155 3 0 chr12 28685752 28686048 -115100407 - AluJb SINE Alu -14 298 2 4459 132 9 42 chr12 28686415 28687150 -115099305 + MER50 LTR ERV1 1 711 -23 285 305 126 18 chr12 28687284 28687451 -115099004 - MIR SINE MIR -62 200 16 1345 159 47 27 chr12 28687472 28687730 -115098725 + MLT1C LTR MaLR 205 467 0 745 180 0 8 chr12 28688012 28688134 -115098321 + AluJo SINE Alu 14 134 -178 1642 166 14 41 chr12 28688144 28688439 -115098016 + AluJb SINE Alu 1 287 -25 43 0 0 0 chr12 28688439 28688482 -115097973 + AT_rich Low_complexity Low_complexity 1 43 0 2090 84 40 0 chr12 28688496 28688792 -115097663 - AluSp SINE Alu 0 307 1 289 313 0 0 chr12 28689010 28689077 -115097378 - MIR SINE MIR -160 102 36 356 348 120 0 chr12 28690247 28690497 -115095958 + L2 LINE L2 2494 2773 -541 1437 271 79 29 chr12 28690582 28691391 -115095064 - L2 LINE L2 -22 3291 2384 1799 160 7 7 chr12 28691412 28691706 -115094749 + AluJb SINE Alu 1 294 -18 309 328 16 25 chr12 28691824 28691946 -115094509 + L2 LINE L2 2935 3055 -217 2563 140 96 77 chr12 28691948 28692482 -115093973 - MLT2B3 LTR ERVL -8 546 3 1721 152 47 7 chr12 28692483 28692780 -115093675 + AluJb SINE Alu 1 309 -3 1813 151 14 7 chr12 28692983 28693262 -115093193 + AluSx SINE Alu 1 281 -31 1906 133 36 3 chr12 28693802 28694104 -115092351 - AluSq SINE Alu -1 312 1 328 91 0 0 chr12 28694104 28694148 -115092307 - Alu SINE Alu -259 44 1 187 247 123 0 chr12 28695161 28695242 -115091213 + L2 LINE L2 2331 2421 -893 26 30 0 0 chr12 28695247 28695280 -115091175 + AT_rich Low_complexity Low_complexity 1 33 0 2314 94 0 10 chr12 28695383 28695682 -115090773 + AluSx SINE Alu 1 296 -16 816 161 8 0 chr12 28695735 28695859 -115090596 - FLAM_C SINE Alu -8 125 1 229 191 0 0 chr12 28696536 28696578 -115089877 + MIR SINE MIR 183 224 -38 1939 124 50 7 chr12 28696820 28697102 -115089353 + AluSx SINE Alu 1 294 -18 2307 117 0 0 chr12 28697482 28697791 -115088664 + AluSx SINE Alu 1 309 -3 258 125 21 21 chr12 28697917 28697965 -115088490 - U5 snRNA snRNA -68 48 1 2809 13 0 0 chr12 28698066 28698369 -115088086 + AluYb8 SINE Alu 5 307 -11 2235 123 0 7 chr12 28698787 28699096 -115087359 + AluSq SINE Alu 1 307 -6 25 0 0 0 chr12 28699162 28699187 -115087268 + AT_rich Low_complexity Low_complexity 1 25 0 238 280 75 32 chr12 28699187 28699280 -115087175 - HAL1 LINE L1 -15 2492 2396 229 194 32 43 chr12 28699283 28699376 -115087079 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 1787 159 11 3 chr12 28700053 28700362 -115086093 + AluJb SINE Alu 1 311 0 258 155 0 41 chr12 28700479 28700717 -115085738 + AluJo SINE Alu 5 302 0 244 357 83 3 chr12 28700930 28701064 -115085391 - MIR SINE MIR -69 139 13 918 139 0 0 chr12 28702939 28703068 -115083387 + FLAM_C SINE Alu 6 134 -9 2385 82 0 0 chr12 28703140 28703434 -115083021 + AluSx SINE Alu 3 296 -16 1286 202 55 7 chr12 28703616 28703888 -115082567 - AluJo SINE Alu -23 289 5 573 307 115 8 chr12 28704033 28704408 -115082047 - L1ME LINE L1 -321 5800 5386 1943 148 0 13 chr12 28704476 28704779 -115081676 - AluJb SINE Alu -5 307 9 3120 157 45 29 chr12 28704796 28705638 -115080817 - L1MB7 LINE L1 0 6184 5356 2402 63 0 3 chr12 28705638 28705925 -115080530 - AluY SINE Alu -12 299 14 3120 157 45 29 chr12 28705925 28705970 -115080485 - L1MB7 LINE L1 -828 5356 5313 1670 183 52 0 chr12 28705970 28706298 -115080157 + MER7A DNA MER2_type 2 344 -2 3120 157 45 29 chr12 28706298 28706458 -115079997 - L1MB7 LINE L1 -871 5313 5157 1150 168 127 59 chr12 28706458 28706780 -115079675 + MER2 DNA MER2_type 1 344 0 3120 157 45 29 chr12 28706780 28706900 -115079555 - L1MB7 LINE L1 -1027 5157 4857 569 271 72 51 chr12 28706958 28707755 -115078700 - L1MC5 LINE L1 -35 7926 7200 866 231 28 36 chr12 28707764 28708015 -115078440 - L1MC4 LINE L1 -1029 7013 6765 310 306 97 21 chr12 28708301 28708445 -115078010 - L1M4 LINE L1 -2264 3882 3728 2316 152 193 131 chr12 28708653 28709124 -115077331 - L1MC3 LINE L1 0 7785 7345 1729 139 3 71 chr12 28709124 28709448 -115077007 - AluJb SINE Alu -10 302 1 2316 152 193 131 chr12 28709448 28709543 -115076912 - L1MC3 LINE L1 -440 7345 7257 381 208 47 38 chr12 28709543 28709649 -115076806 - MLT1F1 LTR MaLR -442 125 19 2316 152 193 131 chr12 28709649 28709944 -115076511 - L1MC3 LINE L1 -528 7257 6758 2193 113 0 0 chr12 28710253 28710546 -115075909 - AluSx SINE Alu -19 293 1 273 267 244 8 chr12 28711399 28711530 -115074925 - MIR SINE MIR -50 212 51 486 0 0 0 chr12 28711665 28711719 -115074736 + (TA)n Simple_repeat Simple_repeat 2 55 0 223 339 211 0 chr12 28712593 28712702 -115073753 - L2 LINE L2 0 3272 3141 2332 93 7 0 chr12 28712917 28713218 -115073237 - AluSp SINE Alu -10 303 1 310 281 86 0 chr12 28713378 28713506 -115072949 - MER103 DNA DNA -9 157 19 1600 165 39 14 chr12 28715544 28715829 -115070626 - AluJo SINE Alu -5 307 16 2069 130 49 11 chr12 28716764 28717111 -115069344 - MER46B DNA MER2_type -1 235 1 22 0 0 0 chr12 28717111 28717133 -115069322 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 28717266 28717292 -115069163 + AT_rich Low_complexity Low_complexity 1 26 0 324 375 117 38 chr12 28717483 28717591 -115068864 + L3 LINE CR1 1263 1361 -216 2033 106 60 3 chr12 28717591 28717875 -115068580 - AluSx SINE Alu -12 300 1 324 375 117 38 chr12 28717875 28718057 -115068398 + L3 LINE CR1 1361 1576 -1 209 200 18 55 chr12 28718248 28718303 -115068152 - L3 LINE CR1 -251 1326 1274 1931 163 3 7 chr12 28718945 28719246 -115067209 - AluJb SINE Alu -12 300 1 1975 107 0 11 chr12 28719594 28719875 -115066580 + AluSx SINE Alu 33 310 -2 304 268 62 31 chr12 28719951 28720048 -115066407 + MIR SINE MIR 31 130 -132 192 217 43 0 chr12 28720086 28720132 -115066323 + L2 LINE L2 3263 3310 -3 601 167 10 0 chr12 28720666 28720768 -115065687 + FLAM_A SINE Alu 8 110 -32 1733 179 0 17 chr12 28721537 28721838 -115064617 - AluJo SINE Alu -16 296 1 2437 82 0 0 chr12 28721923 28722228 -115064227 + AluSq SINE Alu 1 305 -8 818 213 40 40 chr12 28722372 28722654 -115063801 - MLT1A2 LTR MaLR 0 374 1 1000 105 0 0 chr12 28722989 28723122 -115063333 + AluSq/x SINE Alu 1 133 -179 863 123 43 0 chr12 28723650 28723788 -115062667 - AluJb SINE Alu -29 283 140 355 317 79 31 chr12 28723913 28724065 -115062390 - MIR3 SINE MIR -43 165 6 230 240 93 80 chr12 28724207 28724847 -115061608 - MER5A DNA MER1_type -5 184 33 464 198 98 81 chr12 28724224 28724247 -115062208 + MER5B DNA MER1_type 35 56 -122 4035 35 10 0 chr12 28724247 28724738 -115061717 - L1PA4 LINE L1 0 6155 5660 464 198 98 81 chr12 28724738 28724862 -115061593 + MER5B DNA MER1_type 56 172 -6 1175 146 103 5 chr12 28724945 28725158 -115061297 + MER46A DNA MER2_type 2 235 -1 554 351 123 24 chr12 28725405 28725778 -115060677 + L2 LINE L2 2420 2829 -485 350 332 187 14 chr12 28725847 28726136 -115060319 + L2 LINE L2 2934 3272 0 903 222 0 6 chr12 28726576 28726756 -115059699 + MIR SINE MIR 64 242 -20 279 351 75 21 chr12 28726770 28726958 -115059497 + L2 LINE L2 2858 3055 -258 258 246 77 0 chr12 28726932 28726997 -115059458 + L2 LINE L2 3244 3313 0 * 297 0 0 0 chr12 28727116 28727149 -115059306 + (TG)n Simple_repeat Simple_repeat 1 33 0 702 186 0 0 chr12 28727356 28727474 -115058981 - AluJb SINE Alu -20 292 175 671 200 9 0 chr12 28727551 28727666 -115058789 + FLAM_A SINE Alu 1 116 -17 280 171 99 63 chr12 28727759 28727870 -115058585 + L1ME4a LINE L1 5985 6099 -22 400 278 218 28 chr12 28728426 28728642 -115057813 - MIR SINE MIR -2 260 4 836 208 88 19 chr12 28728689 28728949 -115057506 + MER46C DNA MER2_type 18 295 -43 1925 160 0 7 chr12 28729198 28729498 -115056957 + AluJb SINE Alu 1 298 -14 2449 97 0 0 chr12 28729498 28729809 -115056646 + AluSx SINE Alu 1 311 -1 3252 128 68 27 chr12 28730013 28730600 -115055855 - LTR18B LTR ERVL 0 614 4 1255 143 8 73 chr12 28730634 28730893 -115055562 + AluJo SINE Alu 1 242 -70 603 100 55 55 chr12 28731551 28731661 -115054794 + HY1 scRNA scRNA 1 110 -2 26 0 0 0 chr12 28731661 28731687 -115054768 + AT_rich Low_complexity Low_complexity 1 26 0 2008 139 0 0 chr12 28732649 28732930 -115053525 + AluSx SINE Alu 1 281 -31 25 0 0 0 chr12 28733007 28733032 -115053423 + AT_rich Low_complexity Low_complexity 1 25 0 2111 133 3 0 chr12 28733162 28733464 -115052991 + AluJb SINE Alu 1 303 -9 210 191 0 0 chr12 28733755 28733802 -115052653 + GA-rich Low_complexity Low_complexity 2 48 0 1011 249 94 70 chr12 28735550 28735793 -115050662 + MER77 LTR ERV1 62 298 -307 2439 65 0 0 chr12 28735793 28736086 -115050369 + AluY SINE Alu 1 293 -18 1011 249 94 70 chr12 28736086 28736371 -115050084 + MER77 LTR ERV1 298 603 -2 768 154 0 0 chr12 28736543 28736660 -115049795 + FLAM_C SINE Alu 3 119 -24 198 143 0 0 chr12 28736667 28736702 -115049753 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chr12 28737028 28737064 -115049391 + (T)n Simple_repeat Simple_repeat 1 36 0 1779 167 37 0 chr12 28737069 28737368 -115049087 + AluJo SINE Alu 1 310 -2 1146 126 12 118 chr12 28737467 28737722 -115048733 - AluJo SINE Alu -3 309 82 23 0 0 0 chr12 28737731 28737754 -115048701 + AT_rich Low_complexity Low_complexity 1 23 0 2083 108 10 3 chr12 28738089 28738384 -115048071 + AluSq SINE Alu 1 297 -16 944 170 0 96 chr12 28738595 28738783 -115047672 - AluJb SINE Alu -14 298 129 1796 153 0 49 chr12 28738797 28738969 -115047486 - AluJb SINE Alu -19 293 141 2368 96 0 3 chr12 28738969 28739282 -115047173 - AluSx SINE Alu 0 312 1 1796 153 0 49 chr12 28739282 28739417 -115047038 - AluJb SINE Alu -171 141 1 609 89 11 0 chr12 28739609 28739699 -115046756 - L1PB4 LINE L1 -3 6153 6063 2134 110 13 3 chr12 28739768 28740069 -115046386 - AluSx SINE Alu -8 304 1 716 211 38 101 chr12 28740641 28740878 -115045577 + MIR SINE MIR 3 224 -38 1759 133 17 47 chr12 28741028 28741328 -115045127 - AluJo SINE Alu -21 291 1 1974 162 0 7 chr12 28742401 28742709 -115043746 - AluJb SINE Alu -5 307 2 186 43 0 0 chr12 28742955 28742978 -115043477 + (TC)n Simple_repeat Simple_repeat 2 24 0 213 317 150 43 chr12 28743000 28743514 -115042941 + L2 LINE L2 1880 2448 -866 1688 149 53 25 chr12 28743531 28743812 -115042643 - AluJo SINE Alu -21 291 3 2392 79 0 0 chr12 28744751 28745043 -115041412 - AluSc SINE Alu -17 292 1 1893 139 35 3 chr12 28745660 28745948 -115040507 - AluJb SINE Alu -15 297 1 2017 91 25 0 chr12 28746099 28746398 -115040057 + AluSp SINE Alu 1 306 0 2314 108 3 16 chr12 28746794 28747110 -115039345 + AluSx SINE Alu 1 312 0 1899 115 57 14 chr12 28747318 28747597 -115038858 - AluSx SINE Alu -11 301 11 2018 109 0 0 chr12 28748883 28749158 -115037297 - AluSx SINE Alu -37 275 1 927 119 0 22 chr12 28749234 28749368 -115037087 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr12 28749372 28749395 -115037060 + AT_rich Low_complexity Low_complexity 1 23 0 881 215 6 0 chr12 28750555 28750727 -115035728 + AluSg/x SINE Alu 115 287 -23 185 0 40 0 chr12 28750733 28750758 -115035697 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 743 134 0 0 chr12 28751738 28751857 -115034598 + FLAM_C SINE Alu 1 119 -24 211 213 33 16 chr12 28752288 28752349 -115034106 - MER5A DNA MER1_type -85 104 43 2207 128 0 6 chr12 28752543 28752856 -115033599 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr12 28752988 28753014 -115033441 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr12 28753037 28753069 -115033386 + AT_rich Low_complexity Low_complexity 1 32 0 1189 123 91 16 chr12 28753247 28753419 -115033036 - LTR54 LTR ERV1 -1 509 351 2420 53 0 3 chr12 28753419 28753702 -115032753 + AluY SINE Alu 1 328 0 415 0 0 0 chr12 28753702 28753748 -115032707 + (TAAA)n Simple_repeat Simple_repeat 2 100 0 1189 123 91 16 chr12 28753748 28753972 -115032483 - LTR54 LTR ERV1 -159 351 21 581 181 0 11 chr12 28753977 28754211 -115032244 + AluJ SINE Alu 6 289 -23 782 156 8 8 chr12 28754245 28754373 -115032082 - AluJo SINE Alu -178 134 7 2411 86 7 0 chr12 28754485 28754786 -115031669 + AluSq SINE Alu 1 303 -10 366 164 336 0 chr12 28754872 28754982 -115031473 + MIR SINE MIR 111 257 -5 312 173 25 12 chr12 28754982 28755063 -115031392 - L1ME LINE L1 -363 5758 5677 1837 148 0 72 chr12 28755125 28755457 -115030998 + AluJb SINE Alu 1 308 -4 390 226 7 54 chr12 28756491 28756609 -115029846 + FLAM_A SINE Alu 47 130 -3 2309 88 3 0 chr12 28756622 28756918 -115029537 + AluSp SINE Alu 2 298 -15 394 187 103 0 chr12 28758257 28758364 -115028091 + HAL1 LINE L1 2043 2160 -347 637 236 37 65 chr12 28758389 28758456 -115027999 + HAL1 LINE L1 2265 2332 -175 2378 96 3 6 chr12 28758456 28758770 -115027685 + AluSq SINE Alu 1 313 0 637 236 37 65 chr12 28758770 28758948 -115027507 + HAL1 LINE L1 2332 2503 -4 1599 164 14 27 chr12 28758957 28759250 -115027205 + AluJo SINE Alu 8 296 -16 2048 157 3 0 chr12 28759617 28759922 -115026533 - AluJb SINE Alu -6 306 1 1158 102 94 129 chr12 28760634 28760890 -115025565 - Tigger1 DNA MER2_type 0 2418 2172 * 12270 118 7 12 chr12 28760888 28762685 -115023770 - Tigger1 DNA MER2_type -629 1789 1 24 0 0 0 chr12 28762702 28762726 -115023729 + AT_rich Low_complexity Low_complexity 1 24 0 2117 138 3 0 chr12 28762726 28763037 -115023418 - AluSx SINE Alu 0 312 1 2236 110 0 0 chr12 28763591 28763883 -115022572 + AluSq SINE Alu 3 294 -19 1299 108 46 0 chr12 28763892 28764087 -115022368 + L1PA14 LINE L1 5958 6161 0 21 0 0 0 chr12 28765113 28765134 -115021321 + AT_rich Low_complexity Low_complexity 1 21 0 396 260 65 32 chr12 28767271 28767425 -115019030 - MIR SINE MIR -11 251 93 281 237 227 31 chr12 28767524 28767621 -115018834 + MIR SINE MIR 30 145 -117 246 339 62 0 chr12 28767810 28767922 -115018533 + MIR SINE MIR 31 149 -113 326 283 43 0 chr12 28767959 28768051 -115018404 + MLT1F-int LTR MaLR 1 96 -1275 689 286 18 5 chr12 28768123 28768347 -115018108 + MLT1F-int LTR MaLR 285 511 -860 1378 109 0 0 chr12 28768358 28768533 -115017922 + AluSq SINE Alu 1 175 -138 1534 89 11 0 chr12 28768533 28768744 -115017711 + AluSg/x SINE Alu 90 302 0 1690 150 0 104 chr12 28769146 28769473 -115016982 + AluJb SINE Alu 1 293 -19 2316 103 0 0 chr12 28769473 28769764 -115016691 + AluSc SINE Alu 1 291 -18 383 336 35 77 chr12 28770016 28770382 -115016073 + MLT1F-int LTR MaLR 1021 1371 0 1602 252 169 11 chr12 28770382 28770850 -115015605 + MLT1F LTR MaLR 1 542 0 231 238 16 0 chr12 28772264 28772327 -115014128 - MIR SINE MIR -108 154 91 231 356 0 10 chr12 28772474 28772575 -115013880 - MIR SINE MIR -157 105 6 382 191 0 0 chr12 28772667 28772730 -115013725 + MER94 DNA DNA 2 64 -70 1816 213 0 3 chr12 28772803 28773131 -115013324 + Tigger5 DNA MER2_type 1 327 -1996 1698 136 0 19 chr12 28773101 28773366 -115013089 + Tigger5 DNA MER2_type 2064 2323 0 * 196 233 167 0 chr12 28774255 28774315 -115012140 - MIR SINE MIR -58 150 81 2035 80 8 0 chr12 28775742 28775991 -115010464 - AluSx SINE Alu -10 302 52 4015 117 28 0 chr12 28775991 28776555 -115009900 + LTR19B LTR ERV1 1 580 0 414 73 0 0 chr12 28776555 28776610 -115009845 - AluSx SINE Alu -255 56 2 340 269 28 9 chr12 28776839 28776947 -115009508 + MER5A DNA MER1_type 9 118 -71 2414 137 213 27 chr12 28777402 28777914 -115008541 + LTR18B LTR ERVL 2 608 -6 1721 157 3 45 chr12 28778523 28778809 -115007646 + AluJo SINE Alu 1 274 -38 599 125 10 0 chr12 28778813 28778917 -115007538 + (GGGGA)n Simple_repeat Simple_repeat 3 107 0 536 135 0 0 chr12 28779270 28779344 -115007111 + MER63 DNA MER1_type 677 750 -86 262 241 0 0 chr12 28779346 28779404 -115007051 + MER63 DNA MER1_type 977 1034 -26 208 275 275 0 chr12 28779738 28779754 -115006701 - L2 LINE L2 -9 3263 3253 2288 149 44 44 chr12 28779754 28780107 -115006348 + MSTA LTR MaLR 1 356 -72 1734 153 34 20 chr12 28780107 28780402 -115006053 + AluJb SINE Alu 1 299 -13 2288 149 44 44 chr12 28780402 28780476 -115005979 + MSTA LTR MaLR 355 428 0 208 275 275 0 chr12 28780476 28780550 -115005905 - L2 LINE L2 -19 3253 3148 436 255 39 0 chr12 28780612 28780714 -115005741 - L2 LINE L2 -1 3271 3166 332 279 79 63 chr12 28781332 28781748 -115004707 - MLT1L LTR MaLR -2 607 110 3342 146 14 13 chr12 28781773 28782329 -115004126 + L1MA5 LINE L1 5742 6298 -2 1532 238 153 11 chr12 28782358 28782737 -115003718 + MLT1E LTR MaLR 1 433 -160 2401 92 3 0 chr12 28782737 28783032 -115003423 + AluSx SINE Alu 1 296 -16 277 190 0 35 chr12 28783138 28783196 -115003259 + MLT1J LTR MaLR 6 61 -450 1824 207 173 106 chr12 28783199 28783812 -115002643 - MLT1E3 LTR MaLR 0 624 1 658 291 54 77 chr12 28783813 28784126 -115002329 + MLT1J LTR MaLR 62 367 -144 518 211 46 0 chr12 28784147 28784256 -115002199 + MER63A DNA MER1_type 1 114 0 977 128 0 0 chr12 28784256 28784437 -115002018 - FLAM_C SINE Alu 0 181 1 433 301 10 0 chr12 28784440 28784543 -115001912 + MER63A DNA MER1_type 107 210 0 449 226 24 32 chr12 28784543 28784667 -115001788 + MLT1J LTR MaLR 380 502 -9 2278 122 0 0 chr12 28785493 28785805 -115000650 - AluSq SINE Alu -1 312 1 447 284 71 0 chr12 28786052 28786221 -115000234 - MIR SINE MIR -50 212 32 661 189 75 66 chr12 28786357 28786417 -115000038 - ORSL DNA AcHobo -51 224 166 1869 154 3 22 chr12 28786417 28786729 -114999726 + AluJo SINE Alu 1 306 -6 661 189 75 66 chr12 28786729 28786880 -114999575 - ORSL DNA AcHobo -109 166 11 1654 150 64 4 chr12 28787335 28787615 -114998840 + AluSx SINE Alu 3 299 -13 1207 84 6 6 chr12 28788002 28788181 -114998274 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 304 77 0 0 chr12 28788402 28788441 -114998014 + 5S rRNA rRNA 1 39 -82 536 185 0 0 chr12 28788744 28788836 -114997619 + AluSg/x SINE Alu 204 295 -14 1057 205 118 72 chr12 28789763 28789834 -114996621 + MER110 LTR ERV1 146 212 -279 856 131 0 182 chr12 28789834 28790070 -114996385 + 7SK RNA RNA 1 193 0 1057 205 118 72 chr12 28790070 28790329 -114996126 + MER110 LTR ERV1 212 491 0 299 250 0 0 chr12 28790403 28790463 -114995992 + MLT1K LTR MaLR 182 241 -347 731 300 31 43 chr12 28790796 28790991 -114995464 - MIR SINE MIR 0 262 69 2359 84 0 47 chr12 28790991 28791312 -114995143 + AluSg SINE Alu 2 307 -3 731 300 31 43 chr12 28791312 28791373 -114995082 - MIR SINE MIR -193 69 9 1633 142 38 48 chr12 28791518 28791807 -114994648 + AluJo SINE Alu 3 288 -24 291 190 0 0 chr12 28791810 28791868 -114994587 + GA-rich Low_complexity Low_complexity 3 60 0 946 135 0 14 chr12 28792164 28792305 -114994150 - FLAM_C SINE Alu -4 139 1 455 234 55 7 chr12 28792610 28792755 -114993700 + MIR SINE MIR 94 245 -17 1537 150 11 30 chr12 28792839 28793105 -114993350 - AluJo SINE Alu -13 299 39 245 311 89 0 chr12 28794298 28794388 -114992067 + L2 LINE L2 3153 3250 -22 370 305 119 6 chr12 28794488 28794665 -114991790 + MER117 DNA MER1_type 1 197 0 727 92 0 0 chr12 28795490 28795588 -114990867 - AluSg/x SINE Alu -4 306 209 300 70 0 0 chr12 28795846 28795889 -114990566 + (CA)n Simple_repeat Simple_repeat 2 44 0 253 185 19 0 chr12 28796598 28796652 -114989803 + L2 LINE L2 3218 3272 0 24 32 0 0 chr12 28797835 28797866 -114988589 + AT_rich Low_complexity Low_complexity 1 31 0 1781 153 3 30 chr12 28799286 28799586 -114986869 + AluJb SINE Alu 1 292 -20 1329 227 58 68 chr12 28801478 28801568 -114984887 + MLT1C LTR MaLR 6 95 -372 553 135 6 190 chr12 28801568 28801731 -114984724 + FLAM_C SINE Alu 1 133 0 1329 227 58 68 chr12 28801731 28802107 -114984348 + MLT1C LTR MaLR 95 467 0 1786 166 10 16 chr12 28802652 28802966 -114983489 - AluJo SINE Alu 0 312 1 712 183 8 0 chr12 28802968 28803094 -114983361 - AluJo/FLAM SINE Alu -171 131 5 800 167 8 0 chr12 28803174 28803300 -114983155 + FLAM_C SINE Alu 1 127 -16 2228 95 3 0 chr12 28803401 28803685 -114982770 + AluSx SINE Alu 1 318 0 256 61 0 0 chr12 28803685 28803718 -114982737 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 1455 188 0 54 chr12 28805136 28805461 -114980994 - AluJo SINE Alu 0 309 1 436 262 168 0 chr12 28805787 28805961 -114980494 + MIR3 SINE MIR 4 201 -61 216 0 0 0 chr12 28806384 28806408 -114980047 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 398 197 1 48 chr12 28806909 28807000 -114979455 + MIR SINE MIR 72 158 -62 828 136 0 16 chr12 28807522 28807647 -114978808 - FRAM SINE Alu -25 151 29 567 265 29 6 chr12 28807799 28807969 -114978486 + MIR SINE MIR 77 250 -12 2131 112 0 0 chr12 28808710 28809006 -114977449 - AluSx SINE Alu -11 301 6 2375 66 0 10 chr12 28809199 28809504 -114976951 + AluY SINE Alu 1 302 -9 477 284 121 16 chr12 28810085 28810275 -114976180 + MIR SINE MIR 53 262 0 22 80 0 0 chr12 28810352 28810402 -114976053 + AT_rich Low_complexity Low_complexity 1 50 0 1540 154 36 56 chr12 28810721 28811026 -114975429 + AluJo SINE Alu 1 299 -13 606 253 87 99 chr12 28811263 28811575 -114974880 + L1MC4a LINE L1 5255 5569 -2239 1031 166 0 33 chr12 28811575 28811756 -114974699 - FAM SINE Alu 0 175 1 606 253 87 99 chr12 28811756 28811784 -114974671 + L1MC4a LINE L1 5569 5596 -2212 2249 69 6 25 chr12 28811784 28812101 -114974354 + AluY SINE Alu 1 311 0 606 253 87 99 chr12 28812101 28812337 -114974118 + L1MC4a LINE L1 5596 5825 -1983 2547 29 0 10 chr12 28812340 28812647 -114973808 + AluY SINE Alu 1 304 -7 2017 144 112 35 chr12 28812845 28813248 -114973207 + Tigger2a DNA MER2_type 1 434 0 23 97 0 0 chr12 28816018 28816090 -114970365 + GC_rich Low_complexity Low_complexity 1 72 0 24 32 0 0 chr12 28816375 28816406 -114970049 + GC_rich Low_complexity Low_complexity 1 31 0 2225 63 0 0 chr12 28817057 28817343 -114969112 + AluSg SINE Alu 1 286 -24 4834 133 22 8 chr12 28867682 28868593 -114917862 + L1MA1 LINE L1 5122 6042 -260 312 279 142 46 chr12 28868800 28868997 -114917458 + MARNA DNA Mariner 171 386 -200 180 0 0 0 chr12 28868997 28869017 -114917438 + (A)n Simple_repeat Simple_repeat 1 20 0 1939 170 3 0 chr12 28870790 28871102 -114915353 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 28872467 28872488 -114913967 + AT_rich Low_complexity Low_complexity 1 21 0 2152 130 0 0 chr12 28873375 28873675 -114912780 - AluSx SINE Alu -12 300 1 341 287 41 33 chr12 28873705 28873827 -114912628 - L2 LINE L2 0 3313 3191 351 0 0 0 chr12 28874080 28874119 -114912336 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 213 96 25 chr12 28874239 28874367 -114912088 - L1ME4a LINE L1 -4 6087 1233 1769 140 49 18 chr12 28874409 28874695 -114911760 + AluJb SINE Alu 7 301 -11 433 292 66 20 chr12 28876215 28876415 -114910040 - MIR SINE MIR -48 214 2 250 398 18 0 chr12 28876415 28876528 -114909927 + MIR3 SINE MIR 40 154 -54 14171 128 12 3 chr12 28876703 28879625 -114906830 - L1PA10 LINE L1 0 6168 3230 1956 179 48 32 chr12 28879625 28880166 -114906289 + MLT2A2 LTR ERVL 4 554 0 10900 188 12 13 chr12 28880169 28882354 -114904101 - L1PA10 LINE L1 -2916 3230 1048 3028 130 27 0 chr12 28882561 28883006 -114903449 + LTR32 LTR ERVL 15 471 0 265 343 45 26 chr12 28883527 28883802 -114902653 - L2 LINE L2 -235 3037 2701 800 176 8 23 chr12 28884169 28884300 -114902155 - FLAM_C SINE Alu -4 129 1 29 28 0 0 chr12 28884309 28884345 -114902110 + AT_rich Low_complexity Low_complexity 1 36 0 2126 174 14 5 chr12 28884348 28884716 -114901739 - L1PA16 LINE L1 -5 6161 5791 288 296 139 0 chr12 28884809 28884924 -114901531 - L2 LINE L2 -1 3271 3141 760 231 19 52 chr12 28884936 28885022 -114901433 - MER6B DNA MER2_type -660 205 118 1856 152 10 23 chr12 28885022 28885325 -114901130 - AluJo SINE Alu -13 299 1 760 231 19 52 chr12 28885325 28885450 -114901005 - MER6B DNA MER2_type -747 118 1 322 325 150 49 chr12 28885544 28885950 -114900505 + LTR67 LTR ERVL 109 555 -2 819 147 41 100 chr12 28886354 28886524 -114899931 - AluSg/x SINE Alu -19 293 134 2258 191 19 40 chr12 28886707 28887188 -114899267 + MLT1D LTR MaLR 27 497 -8 6861 94 20 4 chr12 28887539 28888981 -114897474 - L1PA10 LINE L1 -4 6164 4707 593 257 73 116 chr12 28889060 28889551 -114896904 + LTR67 LTR ERVL 82 551 -6 592 341 70 61 chr12 28889551 28889618 -114896837 - L2 LINE L2 -451 2863 2798 420 20 0 0 chr12 28889618 28889667 -114896788 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1631 191 7 0 chr12 28889670 28889953 -114896502 - AluJo SINE Alu -25 287 3 592 341 70 61 chr12 28889953 28890568 -114895887 - L2 LINE L2 -517 2797 2171 967 246 177 35 chr12 28890709 28891115 -114895340 + LTR16C LTR ERVL 28 491 0 188 309 173 25 chr12 28892000 28892081 -114894374 - L2 LINE L2 -20 3252 3160 712 211 0 0 chr12 28894554 28894677 -114891778 - FLAM_C SINE Alu -18 125 3 1358 218 84 20 chr12 28895612 28895970 -114890485 - L1MA10 LINE L1 -29 6305 5925 688 245 20 7 chr12 28896484 28896631 -114889824 + MER58B DNA MER1_type 193 341 0 193 310 69 0 chr12 28896640 28896727 -114889728 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr12 28896792 28896842 -114889613 + (TG)n Simple_repeat Simple_repeat 1 51 0 276 311 94 9 chr12 28898797 28898903 -114887552 - L2 LINE L2 -1 3312 3198 1967 157 16 0 chr12 28900200 28900505 -114885950 + AluSx SINE Alu 1 310 -2 354 278 22 0 chr12 28903499 28903589 -114882866 + MER5A DNA MER1_type 9 100 -89 204 283 53 80 chr12 28903887 28904000 -114882455 + L2 LINE L2 3204 3313 0 2461 153 11 54 chr12 28904241 28904424 -114882031 - L1MB3 LINE L1 0 6183 5994 7212 50 11 29 chr12 28904424 28905993 -114880462 + SVA Other Other 1 1386 0 2461 153 11 54 chr12 28905993 28906271 -114880184 - L1MB3 LINE L1 -189 5994 5741 3577 183 34 28 chr12 28905996 28906271 -114880184 - L1MB3 LINE L1 -165 6018 5746 1981 118 147 21 chr12 28906271 28906651 -114879804 - MSTA LTR MaLR 0 428 1 3577 183 34 28 chr12 28906651 28907795 -114878660 - L1MB3 LINE L1 -437 5746 4594 972 251 119 22 chr12 28908874 28909276 -114877179 - LTR16A LTR ERVL -9 441 1 2136 96 24 3 chr12 28909348 28909472 -114876983 + AluY SINE Alu 1 121 -190 396 0 0 0 chr12 28909472 28909516 -114876939 + (CA)n Simple_repeat Simple_repeat 2 45 0 2136 96 24 3 chr12 28909516 28909683 -114876772 + AluY SINE Alu 121 298 -13 13484 165 41 26 chr12 28909928 28911900 -114874555 - L1MA8 LINE L1 -12 7300 5359 192 40 0 0 chr12 28911900 28911925 -114874530 + (TA)n Simple_repeat Simple_repeat 1 25 0 13484 165 41 26 chr12 28911925 28912624 -114873831 - L1MA8 LINE L1 -1953 5359 4672 2215 102 0 0 chr12 28912624 28912930 -114873525 + AluSx SINE Alu 1 306 0 13484 165 41 26 chr12 28912930 28914214 -114872241 - L1MA8 LINE L1 -2640 4672 3284 1639 175 3 28 chr12 28914214 28914499 -114871956 - AluJo SINE Alu -34 278 1 13484 165 41 26 chr12 28914499 28914894 -114871561 - L1MA8 LINE L1 -4028 3284 2896 1826 178 3 20 chr12 28914963 28915267 -114871188 - AluJo SINE Alu -13 299 1 671 271 12 91 chr12 28915329 28915408 -114871047 - L1MA8 LINE L1 -4907 2191 2107 2386 106 0 0 chr12 28915408 28915719 -114870736 + AluSx SINE Alu 1 311 -1 671 271 12 91 chr12 28915719 28916212 -114870243 - L1MA8 LINE L1 -4991 2107 1630 272 329 19 25 chr12 28916958 28917119 -114869336 - L1MA8 LINE L1 -5981 1117 958 225 125 0 42 chr12 28917769 28917817 -114868638 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr12 28917836 28918016 -114868439 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr12 28918016 28918326 -114868129 - AluY SINE Alu -5 306 1 647 289 57 30 chr12 28918326 28919025 -114867430 - L1MC4a LINE L1 -463 5683 5004 230 277 0 0 chr12 28919025 28919090 -114867365 + MIR SINE MIR 129 193 -69 404 256 39 45 chr12 28919195 28919351 -114867104 - L1MC4a LINE L1 -1815 4331 4177 2137 136 0 0 chr12 28919566 28919868 -114866587 + AluJb SINE Alu 1 302 -10 970 272 54 29 chr12 28920352 28920800 -114865655 - HAL1 LINE L1 -806 1701 1243 788 178 0 15 chr12 28921069 28921204 -114865251 + FLAM_C SINE Alu 1 133 0 293 231 133 79 chr12 28921375 28921855 -114864600 + L1ME4a LINE L1 5576 6081 -40 4873 138 16 25 chr12 28921891 28922800 -114863655 - L1MA6 LINE L1 0 6300 5400 1079 163 56 60 chr12 28922800 28923005 -114863450 + MSTB2 LTR MaLR 1 206 -251 1355 90 25 94 chr12 28923005 28923249 -114863206 - MER30 DNA MER1_type 0 230 4 1079 163 56 60 chr12 28923249 28923295 -114863160 + MSTB2 LTR MaLR 206 251 -206 4000 228 45 40 chr12 28923295 28924540 -114861915 - L1 LINE L1 -2776 4789 3552 2074 110 4 7 chr12 28924540 28924848 -114861607 - AluSc SINE Alu 0 307 1 4000 228 45 40 chr12 28924848 28926011 -114860444 - L1 LINE L1 -4013 3552 2396 214 321 0 0 chr12 28926822 28926878 -114859577 - MIR SINE MIR -152 110 55 252 225 58 17 chr12 28927137 28927257 -114859198 + (TA)n Simple_repeat Simple_repeat 1 125 0 2151 120 14 0 chr12 28927388 28927679 -114858776 + AluSx SINE Alu 1 295 -17 2134 107 7 0 chr12 28928337 28928626 -114857829 - AluSx SINE Alu -21 291 1 1855 109 25 11 chr12 28928727 28929002 -114857453 + AluSc SINE Alu 20 298 -11 270 339 8 65 chr12 28929070 28929194 -114857261 - MIR3 SINE MIR -2 206 90 724 208 52 5 chr12 28929435 28929627 -114856828 + L1MC3 LINE L1 7585 7785 0 261 0 0 0 chr12 28930693 28930722 -114855733 + (TG)n Simple_repeat Simple_repeat 2 30 0 1692 118 7 0 chr12 28930926 28931196 -114855259 + L1PB4 LINE L1 5420 5691 -465 2506 61 0 19 chr12 28931224 28931536 -114854919 - AluY SINE Alu -5 306 1 2595 157 6 10 chr12 28931560 28932044 -114854411 + L1PB4 LINE L1 5675 6156 0 445 337 83 0 chr12 28932167 28932348 -114854107 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr12 28932407 28932589 -114853866 + LTR33 LTR ERVL 327 521 0 297 351 32 22 chr12 28932635 28932820 -114853635 - MIR SINE MIR -54 208 19 310 311 161 22 chr12 28934126 28934306 -114852149 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr12 28934314 28934694 -114851761 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr12 28934957 28935689 -114850766 - LTR8 LTR ERV1 0 691 1 181 329 89 62 chr12 28936039 28936185 -114850270 + L2 LINE L2 2866 3015 -257 5344 119 13 35 chr12 28936248 28937162 -114849293 - MER4D LTR ERV1 -9 894 1 2675 158 176 14 chr12 28937235 28937861 -114848594 - LTR8A LTR ERV1 0 727 1 267 151 159 103 chr12 28938386 28938512 -114847943 + MLT1F LTR MaLR 410 542 0 277 348 17 9 chr12 28938653 28938768 -114847687 + LTR67 LTR ERVL 100 215 -342 414 384 33 0 chr12 28939332 28939483 -114846972 - L2 LINE L2 -1 3271 3116 1767 176 22 11 chr12 28939642 28940001 -114846454 - MLT1A1 LTR MaLR -2 363 1 303 347 79 73 chr12 28940158 28940564 -114845891 - L2 LINE L2 -559 2755 2340 327 49 0 0 chr12 28940564 28940605 -114845850 + (TG)n Simple_repeat Simple_repeat 1 41 0 303 347 79 73 chr12 28940605 28940941 -114845514 - L2 LINE L2 -974 2340 2008 2091 125 3 13 chr12 28941162 28941467 -114844988 - AluSx SINE Alu -10 302 1 1079 92 7 0 chr12 28941592 28941734 -114844721 + AluSp SINE Alu 2 144 -169 315 265 140 70 chr12 28941734 28941934 -114844521 + L2 LINE L2 2489 2702 -612 681 372 54 30 chr12 28942029 28942060 -114844395 + L2 LINE L2 2857 2886 -386 2451 53 13 0 chr12 28942060 28942360 -114844095 - AluY SINE Alu -7 304 1 681 372 54 30 chr12 28942360 28942734 -114843721 + L2 LINE L2 2886 3272 0 277 299 23 11 chr12 28942764 28942851 -114843604 + L3 LINE CR1 1474 1561 -16 1000 261 32 19 chr12 28944159 28944473 -114841982 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr12 28944578 28944629 -114841826 + (TG)n Simple_repeat Simple_repeat 1 51 0 703 216 45 61 chr12 28944645 28944955 -114841500 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr12 28945513 28945849 -114840606 + L1MA5 LINE L1 5948 6292 -8 216 278 28 28 chr12 28946767 28946875 -114839580 + CT-rich Low_complexity Low_complexity 1 108 0 5209 131 58 26 chr12 28947421 28948759 -114837696 + L1MA5A LINE L1 4561 5957 -340 2222 93 10 0 chr12 28948759 28949048 -114837407 + AluSx SINE Alu 1 292 -20 5209 131 58 26 chr12 28949048 28949399 -114837056 + L1MA5A LINE L1 5957 6295 -2 2459 65 3 13 chr12 28950162 28950471 -114835984 + AluY SINE Alu 1 306 -5 614 302 36 22 chr12 28950551 28950773 -114835682 - MIR SINE MIR -29 233 9 1058 269 49 59 chr12 28952393 28952884 -114833571 + L2 LINE L2 2815 3300 -13 193 80 0 0 chr12 28954584 28954609 -114831846 - L2 LINE L2 -20 3293 3269 556 286 15 77 chr12 28955134 28955407 -114831048 + MIR SINE MIR 2 257 -5 286 313 111 0 chr12 28955493 28955592 -114830863 - MIR SINE MIR -92 170 61 550 239 46 0 chr12 28955619 28955749 -114830706 - MIR SINE MIR -6 256 121 194 313 60 90 chr12 28956622 28956726 -114829729 - L2 LINE L2 -1 3312 3213 493 189 226 9 chr12 28956726 28956832 -114829623 - FLAM_A SINE Alu -4 129 1 194 313 60 90 chr12 28956832 28956893 -114829562 - L2 LINE L2 -100 3213 3152 187 274 71 12 chr12 28956996 28957080 -114829375 - MIR3 SINE MIR -117 91 3 24 0 0 0 chr12 28957477 28957501 -114828954 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28957854 28957880 -114828575 + AT_rich Low_complexity Low_complexity 1 26 0 329 176 14 0 chr12 28958028 28958102 -114828353 + (TG)n Simple_repeat Simple_repeat 2 76 0 359 345 52 11 chr12 28958598 28958772 -114827683 + MIR SINE MIR 21 201 -61 217 151 27 5 chr12 28958786 28958863 -114827592 - L2 LINE L2 -5 3308 3191 2013 188 3 6 chr12 28960029 28960375 -114826080 - MLT1A1 LTR MaLR 0 365 21 679 262 87 34 chr12 28960556 28960810 -114825645 - MIR SINE MIR -1 261 3 200 213 21 0 chr12 28960849 28960896 -114825559 + CT-rich Low_complexity Low_complexity 2 49 0 23 68 0 0 chr12 28961780 28961824 -114824631 + AT_rich Low_complexity Low_complexity 1 44 0 375 335 68 14 chr12 28962636 28962914 -114823541 - MLT1L LTR MaLR -180 435 143 225 189 0 0 chr12 28963952 28963989 -114822466 + L2 LINE L2 3221 3257 -15 247 282 0 43 chr12 28963995 28964112 -114822343 + CT-rich Low_complexity Low_complexity 3 114 0 1502 186 16 19 chr12 28964155 28964478 -114821977 + MER33 DNA MER1_type 3 324 0 230 136 23 0 chr12 28964930 28964974 -114821481 + (TA)n Simple_repeat Simple_repeat 1 45 0 501 132 8 147 chr12 28965003 28965132 -114821323 + L1MC1 LINE L1 4094 4204 -1942 6677 141 22 4 chr12 28965141 28966271 -114820184 + L1MC1 LINE L1 5185 6333 0 449 193 166 35 chr12 28966271 28966416 -114820039 - MER103 DNA DNA 0 166 3 23 33 0 0 chr12 28967066 28967096 -114819359 + AT_rich Low_complexity Low_complexity 1 30 0 4207 169 57 35 chr12 28967502 28968508 -114817947 + L1MB7 LINE L1 5157 6184 0 281 375 69 17 chr12 28969297 28969529 -114816926 + MIR SINE MIR 2 245 -17 433 268 131 16 chr12 28969597 28969780 -114816675 + L1ME LINE L1 5574 5777 -344 1142 152 81 7 chr12 28969852 28970168 -114816287 + L1MB2 LINE L1 5144 5474 -709 279 0 0 0 chr12 28970170 28970201 -114816254 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 733 189 8 23 chr12 28970206 28970338 -114816117 + FLAM_C SINE Alu 2 131 -12 3684 163 32 26 chr12 28970348 28970688 -114815767 + L1MB2 LINE L1 5486 5822 -349 2676 42 0 0 chr12 28970688 28970997 -114815458 + AluY SINE Alu 1 309 -2 3684 163 32 26 chr12 28970997 28971337 -114815118 + L1MB2 LINE L1 5822 6170 -1 1669 182 11 0 chr12 28971488 28971774 -114814681 - AluJo SINE Alu -23 289 1 446 265 132 34 chr12 28972932 28973136 -114813319 + MIR SINE MIR 20 243 -19 2331 99 0 0 chr12 28973250 28973542 -114812913 - AluSg SINE Alu -13 297 6 2617 24 0 0 chr12 28973907 28974197 -114812258 - L1PA2 LINE L1 0 6155 5866 1888 183 0 6 chr12 28974559 28974870 -114811585 - AluJb SINE Alu -3 309 1 328 313 199 12 chr12 28975116 28975282 -114811173 - L2 LINE L2 -1 3271 3075 340 294 65 24 chr12 28975293 28975463 -114810992 + MIR SINE MIR 58 234 -28 562 279 61 6 chr12 28975782 28975947 -114810508 + L2 LINE L2 2899 3072 -241 756 300 60 0 chr12 28975954 28976187 -114810268 + MIR SINE MIR 1 247 -15 2115 121 0 0 chr12 28976473 28976787 -114809668 + AluSx SINE Alu 1 314 0 286 253 0 0 chr12 28976940 28977015 -114809440 + MER103 DNA DNA 11 85 -81 201 133 0 0 chr12 28978299 28978329 -114808126 + (CATA)n Simple_repeat Simple_repeat 3 32 0 301 314 146 22 chr12 28978426 28978563 -114807892 - L2 LINE L2 0 3272 3119 446 298 62 77 chr12 28979489 28979504 -114806951 - MLT1K LTR MaLR -112 476 462 1699 205 30 19 chr12 28979504 28979865 -114806590 + MLT1A1 LTR MaLR 1 365 0 446 298 62 77 chr12 28979865 28980185 -114806270 - MLT1K LTR MaLR -126 462 146 24 0 0 0 chr12 28980278 28980302 -114806153 + AT_rich Low_complexity Low_complexity 1 24 0 2273 117 0 0 chr12 28980316 28980625 -114805830 + AluSx SINE Alu 1 309 -3 2385 109 0 0 chr12 28980636 28980948 -114805507 + AluSx SINE Alu 1 312 0 1137 186 145 41 chr12 28980948 28981313 -114805142 - LTR37A LTR ERV1 -23 403 1 1987 132 6 38 chr12 28982127 28982475 -114803980 - AluSx SINE Alu 0 338 1 195 42 0 0 chr12 28983828 28983852 -114802603 + (TG)n Simple_repeat Simple_repeat 1 24 0 210 118 0 0 chr12 28983852 28983886 -114802569 + (GA)n Simple_repeat Simple_repeat 2 35 0 664 241 30 45 chr12 28984118 28984317 -114802138 + MIR SINE MIR 21 216 -46 341 273 83 41 chr12 28985480 28985601 -114800854 - L2 LINE L2 -5 3267 3142 24 0 0 0 chr12 28987446 28987470 -114798985 + AT_rich Low_complexity Low_complexity 1 24 0 5471 76 10 0 chr12 28987913 28988597 -114797858 + L1PA13 LINE L1 5472 6162 -1 24 53 0 0 chr12 28990451 28990489 -114795966 + AT_rich Low_complexity Low_complexity 1 38 0 2255 95 30 0 chr12 28991569 28991864 -114794591 + AluSx SINE Alu 1 304 -8 387 105 0 0 chr12 28992401 28992458 -114793997 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 49 73 0 chr12 28992486 28992527 -114793928 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 28992591 28992647 -114793808 + (TA)n Simple_repeat Simple_repeat 1 55 0 319 37 19 37 chr12 28993357 28993411 -114793044 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 557 286 98 10 chr12 28993457 28993660 -114792795 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 28993869 28993976 -114792479 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 414 300 26 42 chr12 28995054 28995244 -114791211 + MIR3 SINE MIR 20 206 -2 383 0 21 0 chr12 28995359 28995406 -114791049 + (TC)n Simple_repeat Simple_repeat 1 48 0 300 53 0 0 chr12 28995596 28995634 -114790821 + (GA)n Simple_repeat Simple_repeat 2 39 0 510 265 8 43 chr12 28996226 28996371 -114790084 - MIR SINE MIR -61 147 20 384 281 117 93 chr12 29001244 29001989 -114784466 - L1M2 LINE L1 -5716 1133 371 195 42 0 0 chr12 29002917 29002941 -114783514 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr12 29003148 29003175 -114783280 + (A)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chr12 29005218 29005254 -114781201 + (TG)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr12 29005253 29005283 -114781172 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 225 0 0 0 chr12 29010574 29010599 -114775856 + (T)n Simple_repeat Simple_repeat 1 25 0 296 297 0 40 chr12 29010754 29010855 -114775600 + GA-rich Low_complexity Low_complexity 2 98 0 255 253 0 72 chr12 29012306 29012389 -114774066 - L2 LINE L2 0 3272 3196 412 270 98 43 chr12 29012478 29012641 -114773814 + L2 LINE L2 3142 3313 0 250 331 95 34 chr12 29014265 29014413 -114772042 + MIR3 SINE MIR 2 158 -50 4357 99 3 2 chr12 29014579 29015207 -114771248 + L1PB2 LINE L1 5523 6151 0 943 244 103 63 chr12 29016675 29017258 -114769197 + MLT1L LTR MaLR 3 608 -7 290 219 0 31 chr12 29017949 29018013 -114768442 + HsTC2 DNA Tc2 80 141 -1757 * 733 215 135 33 chr12 29018012 29018302 -114768153 + HsTC2 DNA Tc2 1282 1541 -357 1856 168 9 25 chr12 29018302 29018618 -114767837 + AluJo SINE Alu 1 311 -1 733 215 135 33 chr12 29018618 29018726 -114767729 + HsTC2 DNA Tc2 1541 1898 0 2204 110 0 10 chr12 29018773 29019073 -114767382 - AluSq SINE Alu -15 298 2 343 360 18 6 chr12 29019136 29019300 -114767155 - LTR67 LTR ERVL -347 210 45 673 257 50 30 chr12 29020527 29020962 -114765493 - MLT1H LTR MaLR 0 549 13 6507 164 17 26 chr12 29021266 29021297 -114765158 + L1MB1 LINE L1 3930 3960 -2208 2143 124 0 17 chr12 29021297 29021596 -114764859 + AluSx SINE Alu 1 294 -18 6507 164 17 26 chr12 29021596 29023310 -114763145 + L1MB1 LINE L1 3960 5689 -479 1773 171 3 23 chr12 29023310 29023619 -114762836 - AluJo SINE Alu -9 303 1 6507 164 17 26 chr12 29023619 29023851 -114762604 + L1MB1 LINE L1 5689 5922 -246 692 163 32 8 chr12 29023851 29023974 -114762481 + FLAM_C SINE Alu 1 126 -7 6507 164 17 26 chr12 29023974 29024252 -114762203 + L1MB1 LINE L1 5922 6165 -3 260 373 45 70 chr12 29024524 29024768 -114761687 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr12 29025269 29025454 -114761001 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr12 29025464 29025608 -114760847 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr12 29025618 29025773 -114760682 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr12 29026250 29026287 -114760168 + (CA)n Simple_repeat Simple_repeat 1 37 0 1917 154 112 30 chr12 29026295 29026677 -114759778 + MLT2C2 LTR ERVL 1 423 -41 222 37 0 0 chr12 29026677 29026704 -114759751 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1917 154 112 30 chr12 29026704 29026750 -114759705 + MLT2C2 LTR ERVL 423 464 0 680 305 68 54 chr12 29026914 29027340 -114759115 + L2 LINE L2 2882 3313 0 183 333 25 25 chr12 29027372 29027453 -114759002 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr12 29027592 29027729 -114758726 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr12 29027870 29028209 -114758246 - MLT1L LTR MaLR -26 589 219 308 24 0 24 chr12 29028563 29028605 -114757850 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 123 3 23 chr12 29028858 29029167 -114757288 + AluSx SINE Alu 1 303 -9 1681 138 190 11 chr12 29029315 29029678 -114756777 + MSTA LTR MaLR 1 428 0 3581 87 47 2 chr12 29031927 29032457 -114753998 - MER41A LTR ERV1 0 554 1 370 364 87 18 chr12 29032871 29033157 -114753298 + L2 LINE L2 2656 2961 -353 199 317 67 94 chr12 29033252 29033432 -114753023 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr12 29033485 29033508 -114752947 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr12 29033535 29033610 -114752845 - MER33 DNA MER1_type -1 362 301 372 199 286 19 chr12 29033689 29033895 -114752560 - L1MEd LINE L1 -5270 849 589 27 29 0 0 chr12 29034087 29034121 -114752334 + AT_rich Low_complexity Low_complexity 1 34 0 33653 33 0 5 chr12 29034121 29039207 -114747248 - L1PA3 LINE L1 0 6155 1094 797 61 18 0 chr12 29039189 29039303 -114747152 - L1PA3 LINE L1 -6030 116 1 * 1004 211 57 8 chr12 29039404 29039669 -114746786 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 29040042 29040094 -114746361 + (TC)n Simple_repeat Simple_repeat 1 52 0 272 242 16 0 chr12 29040389 29040451 -114746004 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 2006 154 7 0 chr12 29040707 29041006 -114745449 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 29041225 29041249 -114745206 + AT_rich Low_complexity Low_complexity 1 24 0 1456 190 70 18 chr12 29042747 29043131 -114743324 - L1MA7 LINE L1 -22 6269 5866 501 265 74 6 chr12 29043146 29043308 -114743147 - MIR SINE MIR -39 223 51 256 235 0 0 chr12 29043372 29043423 -114743032 - MER45 DNA AcHobo 0 1581 1531 420 216 128 0 chr12 29043554 29043656 -114742799 - MER45 DNA AcHobo -1466 115 1 271 371 48 30 chr12 29043690 29043857 -114742598 - L2 LINE L2 -62 3210 3041 198 287 57 82 chr12 29045542 29045664 -114740791 + L2 LINE L2 3139 3257 -15 228 67 0 0 chr12 29045693 29045723 -114740732 + (A)n Simple_repeat Simple_repeat 1 30 0 355 282 83 88 chr12 29047738 29048135 -114738320 + L2 LINE L2 2166 2560 -754 204 300 100 0 chr12 29048183 29048243 -114738212 + L2 LINE L2 3136 3201 -71 1205 235 74 60 chr12 29048287 29048790 -114737665 - MLT1H LTR MaLR -3 546 37 361 276 62 100 chr12 29048890 29049100 -114737355 + MIR3 SINE MIR 2 203 -5 1436 188 0 85 chr12 29050996 29051186 -114735269 - AluJb SINE Alu 0 312 162 414 0 0 0 chr12 29051186 29051232 -114735223 + (TA)n Simple_repeat Simple_repeat 2 47 0 1436 188 0 85 chr12 29051232 29051381 -114735074 - AluJb SINE Alu -150 162 2 201 301 24 48 chr12 29051680 29051763 -114734692 - L2 LINE L2 -1 3271 3191 286 344 151 5 chr12 29052119 29052305 -114734150 + MIR SINE MIR 6 218 -44 1094 190 35 0 chr12 29052491 29052691 -114733764 - AluJb SINE Alu -19 293 87 840 307 43 0 chr12 29053703 29053934 -114732521 + MIR SINE MIR 22 262 0 1872 197 42 50 chr12 29053955 29054076 -114732379 - MLT1F1 LTR MaLR -3 564 444 2735 131 21 0 chr12 29054076 29054495 -114731960 - MSTA LTR MaLR 0 428 1 1872 197 42 50 chr12 29054495 29054922 -114731533 - MLT1F1 LTR MaLR -123 444 25 2114 145 0 0 chr12 29055893 29056196 -114730259 - AluJo SINE Alu -9 303 1 220 308 103 65 chr12 29056678 29056726 -114729729 - L2 LINE L2 -76 3196 3151 1970 129 7 20 chr12 29056726 29057021 -114729434 + AluSx SINE Alu 1 291 -21 220 308 103 65 chr12 29057021 29057287 -114729168 - L2 LINE L2 -121 3151 2870 285 284 42 67 chr12 29057287 29057504 -114728951 + MIR SINE MIR 4 218 -44 225 0 0 0 chr12 29057643 29057668 -114728787 + (TC)n Simple_repeat Simple_repeat 2 26 0 310 300 0 0 chr12 29058936 29059016 -114727439 - L2 LINE L2 -1 3312 3233 391 241 166 14 chr12 29059064 29059209 -114727246 - MIR SINE MIR -84 178 12 22 70 0 0 chr12 29060165 29060208 -114726247 + AT_rich Low_complexity Low_complexity 1 43 0 205 342 42 25 chr12 29060986 29061106 -114725349 + MIR SINE MIR 20 141 -67 509 280 164 0 chr12 29061149 29061356 -114725099 + MIR SINE MIR 8 248 -14 4539 94 3 11 chr12 29061365 29062006 -114724449 + L1PA11 LINE L1 5535 6170 -4 2383 74 0 0 chr12 29062016 29062313 -114724142 + AluY SINE Alu 1 297 -14 2418 76 3 7 chr12 29062882 29063186 -114723269 - AluSc SINE Alu -6 303 1 291 273 36 27 chr12 29063523 29063633 -114722822 - MER81 DNA DNA -2 112 2 262 192 0 0 chr12 29063726 29063778 -114722677 + MER94 DNA DNA 4 55 -79 348 215 65 11 chr12 29065283 29065376 -114721079 - MIR SINE MIR -24 238 141 309 326 0 11 chr12 29065443 29065535 -114720920 + MER81 DNA DNA 18 108 -6 247 357 0 0 chr12 29065543 29065613 -114720842 - MIR SINE MIR -191 71 2 606 296 154 22 chr12 29066153 29066471 -114719984 - L3 LINE CR1 -63 1514 1155 2246 112 3 0 chr12 29067270 29067565 -114718890 + AluSx SINE Alu 2 297 -15 2107 181 3 5 chr12 29068170 29068557 -114717898 - MLT1B LTR MaLR -4 386 1 279 292 200 8 chr12 29070333 29070463 -114715992 - MIR SINE MIR -57 205 51 1928 104 4 0 chr12 29070495 29070746 -114715709 + AluSx SINE Alu 1 252 -60 1541 201 87 14 chr12 29072195 29072564 -114713891 - MSTD LTR MaLR 0 396 1 302 267 17 52 chr12 29072800 29072916 -114713539 + MIR SINE MIR 145 256 -6 686 137 8 0 chr12 29073433 29073557 -114712898 - L1P LINE L1 -1369 4777 4653 22 99 0 0 chr12 29074317 29074388 -114712067 + AT_rich Low_complexity Low_complexity 1 71 0 510 17 0 0 chr12 29074619 29074678 -114711777 + (CA)n Simple_repeat Simple_repeat 2 60 0 5479 55 0 7 chr12 29074806 29075503 -114710952 - L1PA8 LINE L1 0 6172 5481 250 277 22 36 chr12 29075572 29075709 -114710746 + L1ME LINE L1 5529 5663 -458 8067 174 13 10 chr12 29075727 29077384 -114709071 - L1P LINE L1 -1126 5020 3360 5653 121 20 5 chr12 29077382 29078320 -114708135 + L1PA15 LINE L1 5217 6165 0 * 27 0 0 0 chr12 29078427 29078454 -114708001 + AT_rich Low_complexity Low_complexity 1 27 0 306 0 0 0 chr12 29078937 29078971 -114707484 + (CAA)n Simple_repeat Simple_repeat 1 34 0 198 378 157 16 chr12 29079201 29079386 -114707069 - L2 LINE L2 -192 3080 2870 2293 117 0 0 chr12 29079490 29079790 -114706665 + AluSq SINE Alu 1 300 -13 323 329 25 68 chr12 29080128 29080289 -114706166 + L3 LINE CR1 1383 1536 -41 435 269 108 7 chr12 29083668 29083840 -114702615 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 29084106 29084127 -114702328 + AT_rich Low_complexity Low_complexity 1 21 0 1665 130 11 115 chr12 29085070 29085417 -114701038 - AluSx SINE Alu -1 311 1 486 219 48 9 chr12 29085768 29085873 -114700582 + L2 LINE L2 3205 3313 0 362 185 0 22 chr12 29086117 29086209 -114700246 + CT-rich Low_complexity Low_complexity 3 92 0 1118 161 5 21 chr12 29086245 29086431 -114700024 - AluJb SINE Alu -36 276 94 207 0 0 0 chr12 29086853 29086876 -114699579 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 111 0 0 chr12 29086883 29086928 -114699527 + (GA)n Simple_repeat Simple_repeat 2 46 0 468 299 101 10 chr12 29086972 29087179 -114699276 + MIR SINE MIR 20 245 -17 2400 83 0 10 chr12 29087253 29087566 -114698889 - AluSg SINE Alu 0 310 1 271 217 61 26 chr12 29088524 29088639 -114697816 + LTR67 LTR ERVL 439 557 0 21 0 0 0 chr12 29088918 29088939 -114697516 + AT_rich Low_complexity Low_complexity 1 21 0 827 264 66 14 chr12 29090067 29090415 -114696040 - L1MC4 LINE L1 -124 7918 7553 241 214 107 0 chr12 29091379 29091435 -114695020 + MIR SINE MIR 93 154 -108 2348 83 3 10 chr12 29091765 29092066 -114694389 - AluSg SINE Alu -11 299 1 211 291 174 0 chr12 29094602 29094688 -114691767 - MIR3 SINE MIR -7 201 101 374 171 0 0 chr12 29095195 29095265 -114691190 - MER116 DNA Mariner -7 73 4 1240 304 30 24 chr12 29098241 29098748 -114687707 + L1MA8 LINE L1 1 510 -5771 13508 198 49 15 chr12 29098763 29101569 -114684886 + L1MA8 LINE L1 863 3573 -2922 1679 179 26 13 chr12 29101569 29101871 -114684584 - AluJb SINE Alu -6 306 1 13508 198 49 15 chr12 29101871 29104845 -114681610 + L1MA8 LINE L1 3573 6493 -2 23 68 0 0 chr12 29104846 29104890 -114681565 + AT_rich Low_complexity Low_complexity 1 44 0 359 271 245 0 chr12 29105062 29105213 -114681242 + MIR SINE MIR 2 189 -73 1553 178 15 109 chr12 29106007 29106412 -114680043 + MLT1E1 LTR MaLR 288 654 0 640 171 8 0 chr12 29106416 29106545 -114679910 - L1 LINE L1 -2604 3542 3413 7164 175 43 22 chr12 29106545 29107489 -114678966 + L1MB1 LINE L1 3506 4429 -1760 2237 105 0 19 chr12 29107489 29107802 -114678653 + AluY SINE Alu 1 307 -4 7164 175 43 22 chr12 29107802 29109463 -114676992 + L1MB1 LINE L1 4429 6172 -17 647 270 12 0 chr12 29109621 29109784 -114676671 - MLT2E LTR ERVL -22 606 442 1145 235 62 19 chr12 29109890 29110260 -114676195 - L1ME1 LINE L1 -8 6158 5773 22 70 0 0 chr12 29110263 29110306 -114676149 + AT_rich Low_complexity Low_complexity 1 43 0 482 184 0 0 chr12 29110383 29110481 -114675974 - L1M4 LINE L1 -1949 4197 4100 3305 290 25 19 chr12 29110539 29111559 -114674896 - ERVL LTR ERVL -2879 2885 1860 2014 181 83 5 chr12 29111657 29112055 -114674400 + MSTB1 LTR MaLR 4 432 0 695 219 115 89 chr12 29112369 29112752 -114673703 - MER34B LTR ERV1 -159 406 14 185 305 126 0 chr12 29112938 29113033 -114673422 + L2 LINE L2 3200 3306 -7 195 305 17 17 chr12 29113894 29113953 -114672502 + L2 LINE L2 3158 3216 -56 747 194 62 0 chr12 29114158 29114302 -114672153 + FRAM SINE Alu 11 163 -13 254 181 63 110 chr12 29114361 29114472 -114671983 - HAL1b LINE L1 -437 911 805 1726 124 109 29 chr12 29114472 29114819 -114671636 - THE1C LTR MaLR 0 375 1 254 181 63 110 chr12 29114819 29114834 -114671621 - HAL1b LINE L1 -543 805 791 410 315 11 14 chr12 29115744 29115905 -114670550 + MIR SINE MIR 19 178 -62 514 210 464 0 chr12 29115935 29116183 -114670272 + L2 LINE L2 2328 2690 -624 839 284 66 49 chr12 29116413 29116762 -114669693 + L2 LINE L2 2959 3313 0 223 246 51 68 chr12 29118968 29119086 -114667369 - MIR SINE MIR -56 206 91 22 0 0 0 chr12 29120714 29120736 -114665719 + AT_rich Low_complexity Low_complexity 1 22 0 212 336 61 23 chr12 29122040 29122171 -114664284 - MIR SINE MIR 0 262 127 788 282 60 0 chr12 29122232 29122448 -114664007 + MIR SINE MIR 2 230 -32 234 105 0 0 chr12 29122467 29122505 -114663950 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 224 15 0 chr12 29123026 29123093 -114663362 + (TA)n Simple_repeat Simple_repeat 2 69 0 798 283 128 8 chr12 29124390 29124772 -114661683 + MLT1J LTR MaLR 65 492 -19 260 300 0 0 chr12 29124913 29124973 -114661482 + L2 LINE L2 3200 3259 -54 834 136 14 4 chr12 29125114 29125398 -114661057 + CT-rich Low_complexity Low_complexity 1 287 0 502 201 187 22 chr12 29125398 29125537 -114660918 - FRAM SINE Alu -16 160 1 804 325 16 0 chr12 29125537 29125789 -114660666 - MIR SINE MIR -5 257 2 445 200 92 46 chr12 29126415 29126545 -114659910 + MER63A DNA MER1_type 75 210 0 2202 110 0 7 chr12 29126708 29127009 -114659446 - AluSx SINE Alu -13 299 1 204 67 0 0 chr12 29127714 29127744 -114658711 + (T)n Simple_repeat Simple_repeat 1 30 0 396 321 34 83 chr12 29129675 29129940 -114656515 + MIR SINE MIR 10 261 -1 2152 120 35 41 chr12 29130358 29130724 -114655731 - THE1B LTR MaLR 0 364 1 292 243 138 59 chr12 29132778 29132930 -114653525 + MER5B DNA MER1_type 1 164 -14 6957 35 0 4 chr12 29132991 29133824 -114652631 + L1PA3 LINE L1 5326 6155 0 255 336 116 6 chr12 29133886 29134039 -114652416 - MIR SINE MIR -40 168 38 2435 159 26 9 chr12 29134194 29134615 -114651840 - MSTA LTR MaLR 0 428 1 45 19 0 0 chr12 29134909 29134961 -114651494 + AT_rich Low_complexity Low_complexity 1 52 0 211 220 0 20 chr12 29136276 29136326 -114650129 - L2 LINE L2 0 3272 3224 637 222 38 70 chr12 29136627 29136812 -114649643 - MER91B DNA MER1_type -10 180 2 23 0 0 0 chr12 29137258 29137281 -114649174 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 29138371 29138411 -114648044 + AT_rich Low_complexity Low_complexity 1 40 0 5206 146 28 9 chr12 29138564 29139808 -114646647 + L1PB4 LINE L1 4885 6153 -3 570 322 45 66 chr12 29142403 29142782 -114643673 + HAL1b LINE L1 12 382 -966 1212 276 72 7 chr12 29143124 29143581 -114642874 + L1MC4a LINE L1 5382 5868 -1940 355 288 41 0 chr12 29143877 29144023 -114642432 + L1ME3 LINE L1 2262 2413 -3733 410 301 6 25 chr12 29144132 29144295 -114642160 + L1ME3 LINE L1 2644 2803 -3343 431 38 0 0 chr12 29144296 29144349 -114642106 - MADE1 DNA Mariner -17 63 11 413 57 0 0 chr12 29144343 29144396 -114642059 - MADE1 DNA Mariner -27 53 1 * 581 267 131 64 chr12 29144475 29145076 -114641379 + L1ME3 LINE L1 2921 3607 -2539 1721 99 5 0 chr12 29145076 29145297 -114641158 + AluSp SINE Alu 1 222 -91 581 267 131 64 chr12 29145297 29145593 -114640862 + L1ME3 LINE L1 3607 3881 -2265 833 288 49 98 chr12 29145629 29146219 -114640236 - L2 LINE L2 0 3313 2739 1689 174 11 0 chr12 29146219 29146506 -114639949 - AluJo SINE Alu -18 294 5 833 288 49 98 chr12 29146506 29146702 -114639753 - L2 LINE L2 -574 2739 2535 1717 240 60 31 chr12 29146716 29147196 -114639259 - MLT2B1 LTR ERVL 0 520 27 1186 290 87 27 chr12 29147283 29148967 -114637488 + L1ME3 LINE L1 4079 5932 -230 1456 260 37 20 chr12 29149241 29149695 -114636760 + L1ME3A LINE L1 5657 6118 -52 8111 172 34 13 chr12 29149759 29150031 -114636424 + L1M2 LINE L1 3584 3849 -2297 1948 143 26 54 chr12 29150031 29150417 -114636038 - THE1C LTR MaLR 0 375 1 8111 172 34 13 chr12 29150417 29151786 -114634669 + L1M2 LINE L1 3849 5259 -887 309 186 0 0 chr12 29151799 29151869 -114634586 + L1M2 LINE L1 5390 5459 -832 1061 234 43 40 chr12 29151906 29152051 -114634404 - MLT1J LTR MaLR -205 306 163 2488 129 3 3 chr12 29152051 29152415 -114634040 + THE1B LTR MaLR 1 364 0 10011 111 37 37 chr12 29152415 29153995 -114632460 + THE1B-int LTR MaLR 1 1580 0 2246 120 27 33 chr12 29153995 29154361 -114632094 + THE1B LTR MaLR 1 364 0 1061 234 43 40 chr12 29154361 29154516 -114631939 - MLT1J LTR MaLR -347 164 3 966 264 18 0 chr12 29154595 29154815 -114631640 - MER58A DNA MER1_type 0 224 1 2435 136 29 26 chr12 29154821 29155240 -114631215 - MSTB LTR MaLR -5 421 2 188 364 15 15 chr12 29155273 29155339 -114631116 + L2 LINE L2 3157 3222 -50 7425 35 3 0 chr12 29155367 29156296 -114630159 + L1PA3 LINE L1 5224 6155 0 252 0 0 0 chr12 29156460 29156488 -114629967 + (TG)n Simple_repeat Simple_repeat 2 29 0 207 114 0 0 chr12 29156489 29156524 -114629931 + (TGG)n Simple_repeat Simple_repeat 3 37 0 261 195 0 0 chr12 29158426 29158467 -114627988 - MSTB LTR MaLR -125 301 261 388 191 12 48 chr12 29158639 29158723 -114627732 + MER58A DNA MER1_type 1 81 -26 1196 270 24 15 chr12 29158723 29159060 -114627395 - MER93a LTR ERV1 0 402 63 721 181 42 14 chr12 29159151 29159295 -114627160 + MER58A DNA MER1_type 74 221 -3 1797 159 7 26 chr12 29159790 29160098 -114626357 + AluJb SINE Alu 5 306 -6 306 337 114 10 chr12 29160782 29160975 -114625480 + MIR SINE MIR 34 246 -16 1113 158 91 10 chr12 29161830 29162039 -114624416 - AluJb SINE Alu -23 289 64 468 134 0 0 chr12 29162039 29162106 -114624349 + AluJb SINE Alu 52 118 -194 42 20 0 0 chr12 29162106 29162155 -114624300 + AT_rich Low_complexity Low_complexity 1 49 0 654 226 37 5 chr12 29162161 29162351 -114624104 + L1M4 LINE L1 1306 1501 -4883 660 294 16 102 chr12 29162367 29162748 -114623707 - L2 LINE L2 -2672 642 295 310 328 41 51 chr12 29162773 29162968 -114623487 + HAL1b LINE L1 105 297 -1051 24 32 0 0 chr12 29163007 29163038 -114623417 + AT_rich Low_complexity Low_complexity 1 31 0 2063 148 0 7 chr12 29163236 29163541 -114622914 + AluSx SINE Alu 1 303 -9 2967 70 8 0 chr12 29163818 29164190 -114622265 - THE1C LTR MaLR 0 375 1 554 245 180 55 chr12 29164512 29164712 -114621743 - MIR SINE MIR -10 252 28 22 35 0 0 chr12 29166112 29166141 -114620314 + AT_rich Low_complexity Low_complexity 1 29 0 264 185 0 0 chr12 29166565 29166619 -114619836 + (TG)n Simple_repeat Simple_repeat 2 55 0 407 267 64 74 chr12 29166740 29167193 -114619262 + L1M4 LINE L1 3288 3729 -2653 849 284 77 34 chr12 29167240 29167628 -114618827 - MLT1J2 LTR MaLR -37 413 9 476 260 100 50 chr12 29167695 29167895 -114618560 - MER63A DNA MER1_type 0 210 1 23 0 0 0 chr12 29170110 29170133 -114616322 + AT_rich Low_complexity Low_complexity 1 23 0 692 269 105 56 chr12 29170146 29170719 -114615736 - L1MC4a LINE L1 -1642 6166 5566 588 248 47 24 chr12 29170763 29171017 -114615438 + L1MC5 LINE L1 7317 7576 -385 203 258 22 22 chr12 29171027 29171116 -114615339 + (TA)n Simple_repeat Simple_repeat 1 89 0 5453 50 1 0 chr12 29171127 29171791 -114614664 + L1PA7 LINE L1 5486 6150 -4 441 187 0 0 chr12 29171898 29171973 -114614482 - Tigger1 DNA MER2_type 0 2418 2344 * 3368 130 31 0 chr12 29171969 29172522 -114613933 - Tigger1 DNA MER2_type -981 1437 868 3080 109 68 8 chr12 29172529 29173015 -114613440 - L1PB1 LINE L1 -1 6150 5636 1761 168 37 0 chr12 29173557 29173855 -114612600 - AluJb SINE Alu -3 309 1 2666 148 21 48 chr12 29174919 29175509 -114610946 + MER51A LTR ERV1 1 634 0 2552 155 141 34 chr12 29175625 29176180 -114610275 - LTR18B LTR ERVL 0 614 1 9720 159 22 1 chr12 29176334 29177954 -114608501 - HERVL18 LTR ERVL 0 6047 4394 3702 186 3 3 chr12 29177956 29178584 -114607871 - HERVL18 LTR ERVL -2468 3579 2952 1103 235 4 6 chr12 29178598 29178880 -114607575 - HERVL18 LTR ERVL -2971 3076 2720 * 8430 165 5 7 chr12 29178879 29180333 -114606122 - HERVL18 LTR ERVL -3595 2452 939 1550 164 11 4 chr12 29180370 29180638 -114605817 - HERVL18 LTR ERVL -5774 273 4 2341 142 195 45 chr12 29180671 29181205 -114605250 - LTR18B LTR ERVL 0 614 1 825 305 65 11 chr12 29181213 29181567 -114604888 + MLT1K LTR MaLR 216 588 0 376 271 72 58 chr12 29182035 29182326 -114604129 - L1MC/D LINE L1 -2163 5645 5351 933 186 26 26 chr12 29183044 29183238 -114603217 + MER51D LTR ERV1 464 657 0 317 146 0 0 chr12 29184011 29184059 -114602396 + MER34-int LTR ERV1 728 775 -7041 466 309 34 15 chr12 29184185 29184480 -114601975 + MER34-int LTR ERV1 1544 1625 -5051 281 111 42 69 chr12 29184936 29185008 -114601447 + MER34-int LTR ERV1 1722 1791 -6329 1227 188 87 58 chr12 29185093 29185685 -114600770 + MER34-int LTR ERV1 1772 4170 -2506 558 236 20 7 chr12 29185952 29186100 -114600355 + MER34-int LTR ERV1 7667 7816 0 1059 157 10 25 chr12 29186439 29186636 -114599819 + MER51D LTR ERV1 464 657 0 285 254 110 51 chr12 29187190 29187308 -114599147 + MIR SINE MIR 134 258 -4 657 188 6 56 chr12 29187420 29187580 -114598875 - LTR32 LTR ERVL -1 470 319 498 152 0 0 chr12 29187634 29187713 -114598742 - LTR32 LTR ERVL -379 92 14 882 101 7 22 chr12 29188042 29188181 -114598274 + AluY SINE Alu 175 311 0 861 215 23 6 chr12 29188567 29188744 -114597711 - MER5A DNA MER1_type -9 180 1 27 73 0 0 chr12 29190134 29190189 -114596266 + AT_rich Low_complexity Low_complexity 1 55 0 188 281 24 49 chr12 29191830 29191912 -114594543 + MIR SINE MIR 58 137 -71 1672 198 55 38 chr12 29191959 29192435 -114594020 + Charlie1b DNA MER1_type 33 516 -7 228 247 13 52 chr12 29192598 29192675 -114593780 - MER5B DNA MER1_type 0 178 105 718 169 11 45 chr12 29193745 29193923 -114592532 - L1MB8 LINE L1 0 6178 6007 342 310 76 6 chr12 29193970 29194128 -114592327 + MER34 LTR ERV1 2 170 -372 38110 36 56 1 chr12 29194375 29200199 -114586256 + L1PA2 LINE L1 3 6153 -2 25 0 0 0 chr12 29201093 29201118 -114585337 + AT_rich Low_complexity Low_complexity 1 25 0 180 245 38 0 chr12 29201357 29201410 -114585045 + L3 LINE CR1 528 582 -995 685 133 46 67 chr12 29201461 29201656 -114584799 + L1MA7 LINE L1 6100 6290 -1 267 362 55 36 chr12 29201928 29202235 -114584220 - L2 LINE L2 -1230 2084 1772 1766 185 74 60 chr12 29202998 29203485 -114582970 - MLT1D LTR MaLR 0 505 12 2248 123 0 0 chr12 29203589 29203891 -114582564 - AluSx SINE Alu -10 302 1 417 66 0 0 chr12 29207348 29207409 -114579046 + (TG)n Simple_repeat Simple_repeat 2 62 0 291 233 55 110 chr12 29207930 29208002 -114578453 + MIR3 SINE MIR 61 123 -85 240 59 0 0 chr12 29208002 29208036 -114578419 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 233 55 110 chr12 29208036 29208109 -114578346 + MIR3 SINE MIR 123 198 -10 615 290 28 16 chr12 29208181 29208436 -114578019 - MIR SINE MIR -3 259 2 317 341 73 55 chr12 29209411 29209575 -114576880 + L2 LINE L2 3091 3257 -15 386 282 8 16 chr12 29209880 29210004 -114576451 - MLT1H LTR MaLR -389 160 38 789 218 19 51 chr12 29212131 29212347 -114574108 - MER3 DNA MER1_type 0 209 1 7472 221 12 5 chr12 29212912 29214647 -114571808 - L1PA13 LINE L1 -2273 4524 2778 4708 52 2 1 chr12 29214631 29215543 -114570912 - L1PA5 LINE L1 -457 5697 4785 * 3697 48 0 2 chr12 29215543 29215985 -114570470 + L1PA5 LINE L1 5689 6141 -13 2893 249 42 11 chr12 29215990 29217041 -114569414 + L1M4 LINE L1 2277 3360 -2786 5179 224 16 22 chr12 29217043 29218709 -114567746 - L1PA13 LINE L1 -3999 2798 1123 1322 259 84 50 chr12 29218727 29218949 -114567506 - L1MEc LINE L1 -3198 3017 2804 1869 105 72 56 chr12 29218949 29219254 -114567201 - AluSg SINE Alu 0 310 1 1322 259 84 50 chr12 29219254 29219768 -114566687 - L1MEc LINE L1 -3411 2804 2256 627 261 33 68 chr12 29219782 29220051 -114566404 - L1MEc LINE L1 -4192 2204 1958 2113 101 28 0 chr12 29220051 29220337 -114566118 - AluSc SINE Alu -6 303 10 627 261 33 68 chr12 29220337 29220550 -114565905 - L1MEc LINE L1 -4438 1958 1739 1431 176 17 0 chr12 29220568 29220807 -114565648 + MER2 DNA MER2_type 1 243 -102 2917 176 68 23 chr12 29220810 29221423 -114565032 - LTR9B LTR ERV1 0 644 4 1223 177 14 23 chr12 29221426 29221646 -114564809 - HUERS-P3 LTR ERV1 -1 8918 8701 336 143 16 16 chr12 29221756 29221819 -114564636 - LTR9 LTR ERV1 -549 63 1 296 269 118 0 chr12 29221819 29221911 -114564544 + MER2 DNA MER2_type 243 345 0 417 301 49 21 chr12 29221912 29222198 -114564257 - L1MEc LINE L1 -4675 1721 1428 1797 288 80 54 chr12 29222206 29223475 -114562980 - L1MEc LINE L1 -5029 1367 63 523 55 96 0 chr12 29223475 29223548 -114562907 + MADE1 DNA Mariner 1 80 0 1797 288 80 54 chr12 29223548 29223568 -114562887 - L1MEc LINE L1 -6333 63 45 1801 215 46 63 chr12 29223615 29224043 -114562412 + LTR40a LTR ERVL 1 420 -99 2397 88 7 0 chr12 29224043 29224351 -114562104 - AluY SINE Alu -1 310 1 1801 215 46 63 chr12 29224351 29224447 -114562008 + LTR40a LTR ERVL 420 516 -3 328 294 201 22 chr12 29224516 29224700 -114561755 - MIR SINE MIR 0 262 46 2504 183 67 35 chr12 29225638 29226136 -114560319 + MLT2B3 LTR ERVL 1 519 -35 677 53 11 0 chr12 29226136 29226230 -114560225 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 2504 183 67 35 chr12 29226230 29226268 -114560187 + MLT2B3 LTR ERVL 519 554 0 384 252 103 9 chr12 29226996 29227103 -114559352 + MER34 LTR ERV1 410 526 -16 225 0 0 0 chr12 29227103 29227128 -114559327 + (A)n Simple_repeat Simple_repeat 1 25 0 1010 144 124 28 chr12 29227348 29227598 -114558857 - L1MB8 LINE L1 -197 5981 5708 310 266 147 18 chr12 29227820 29227929 -114558526 - MIR3 SINE MIR -1 207 85 1843 157 3 20 chr12 29228765 29229071 -114557384 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 29229522 29229551 -114556904 + AT_rich Low_complexity Low_complexity 1 29 0 400 274 109 70 chr12 29230259 29230489 -114555966 - HAL1 LINE L1 -77 2430 2192 384 22 0 0 chr12 29230499 29230544 -114555911 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 781 257 182 75 chr12 29230546 29231029 -114555426 + LTR67 LTR ERVL 19 553 -4 670 319 4 23 chr12 29231593 29231856 -114554599 - HAL1 LINE L1 -717 1790 1533 315 0 0 0 chr12 29233451 29233486 -114552969 + (A)n Simple_repeat Simple_repeat 1 35 0 184 309 31 52 chr12 29234266 29234363 -114552092 + MIR SINE MIR 83 177 -85 536 167 158 0 chr12 29234374 29234488 -114551967 - L1MC2 LINE L1 -11 6333 6202 242 337 11 11 chr12 29235420 29235509 -114550946 - MER5B DNA MER1_type -1 177 89 649 242 96 32 chr12 29235653 29235934 -114550521 + L1ME4a LINE L1 5620 5918 -203 1085 214 149 70 chr12 29236018 29236063 -114550392 - MLT2B1 LTR ERVL 0 520 480 536 106 11 0 chr12 29236063 29236157 -114550298 + (TA)n Simple_repeat Simple_repeat 1 95 0 1085 214 149 70 chr12 29236157 29236403 -114550052 - MLT2B1 LTR ERVL -40 480 255 408 71 0 0 chr12 29236403 29236459 -114549996 + (TG)n Simple_repeat Simple_repeat 1 56 0 1085 214 149 70 chr12 29236459 29236648 -114549807 - MLT2B1 LTR ERVL -265 255 1 24 0 0 0 chr12 29237380 29237404 -114549051 + AT_rich Low_complexity Low_complexity 1 24 0 1309 178 0 13 chr12 29238332 29238568 -114547887 - MER46A DNA MER2_type -3 233 1 5075 101 40 6 chr12 29238739 29239515 -114546940 - L1MA3 LINE L1 0 6305 5504 427 254 8 74 chr12 29240365 29240487 -114545968 + MIR SINE MIR 2 115 -147 1230 181 25 137 chr12 29240555 29240723 -114545732 + MLT1B LTR MaLR 1 99 -291 1983 133 3 17 chr12 29240723 29241025 -114545430 + AluSg SINE Alu 1 298 -12 1230 181 25 137 chr12 29241025 29241259 -114545196 + MLT1B LTR MaLR 99 358 -32 3570 168 31 31 chr12 29241259 29241960 -114544495 + MER44D DNA MER2_type 1 701 -4 700 169 11 0 chr12 29241960 29242086 -114544369 - L1MC/D LINE L1 -529 5783 5655 504 201 71 24 chr12 29244016 29244185 -114542270 + MER96B DNA MER1_type? 2 178 -239 286 180 0 0 chr12 29244466 29244516 -114541939 + MER96B DNA MER1_type? 193 242 -175 1972 106 0 46 chr12 29244769 29245072 -114541383 + AluSg SINE Alu 1 289 -21 5173 148 14 21 chr12 29245401 29246324 -114540131 + MER49 LTR ERV1 5 921 -2 1392 233 136 17 chr12 29246593 29247013 -114539442 - MLT1E LTR MaLR -2 591 122 1119 55 16 42 chr12 29247022 29247334 -114539121 + (TTTC)n Simple_repeat Simple_repeat 2 486 0 6678 198 5 50 chr12 29247530 29248586 -114537869 + L1PA15 LINE L1 3802 4904 -1261 2106 152 25 0 chr12 29248586 29248941 -114537514 + THE1B LTR MaLR 1 364 0 6678 198 5 50 chr12 29248941 29250128 -114536327 + L1PA15 LINE L1 4904 6004 -161 2185 115 3 0 chr12 29250128 29250433 -114536022 + AluSp SINE Alu 6 311 -2 6678 198 5 50 chr12 29250433 29250584 -114535871 + L1PA15 LINE L1 6004 6160 -5 721 276 140 5 chr12 29250586 29251028 -114535427 + L1M4 LINE L1 2949 3450 -2696 1160 259 11 32 chr12 29251029 29251113 -114535342 + L1MCc LINE L1 18 102 -6321 207 0 0 0 chr12 29251113 29251136 -114535319 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1160 259 11 32 chr12 29251136 29251422 -114535033 + L1MCc LINE L1 102 380 -6043 2101 109 0 33 chr12 29251422 29251725 -114534730 - AluSq SINE Alu 0 313 21 5650 231 47 51 chr12 29251725 29251827 -114534628 - L1MC/D LINE L1 -592 5582 5481 2252 126 0 0 chr12 29251827 29252137 -114534318 - AluSx SINE Alu -2 310 1 5650 231 47 51 chr12 29252137 29254366 -114532089 - L1MC/D LINE L1 -693 5481 3267 513 353 140 25 chr12 29254393 29255022 -114531433 + L2 LINE L2 2031 2731 -583 191 267 10 69 chr12 29255504 29255605 -114530850 - L2 LINE L2 -251 3021 2927 591 112 0 0 chr12 29256298 29256387 -114530068 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 503 248 9 0 chr12 29256600 29256709 -114529746 - MER81 DNA DNA -4 110 1 326 0 74 0 chr12 29257160 29257214 -114529241 + (TA)n Simple_repeat Simple_repeat 1 58 0 474 233 134 78 chr12 29257841 29257956 -114528499 - MIR SINE MIR -2 260 153 2390 80 0 10 chr12 29257956 29258270 -114528185 - AluY SINE Alu 0 311 1 474 233 134 78 chr12 29258270 29258386 -114528069 - MIR SINE MIR -109 153 16 239 316 63 0 chr12 29258511 29258590 -114527865 - L2 LINE L2 -3 3310 3227 415 237 29 36 chr12 29259585 29259724 -114526731 + L1MCc LINE L1 762 899 -6223 1227 197 36 64 chr12 29259764 29260094 -114526361 - MLT2D LTR ERVL -2 412 92 1199 231 71 47 chr12 29260120 29260509 -114525946 + L1MCc LINE L1 2376 2754 -4187 7770 20 0 0 chr12 29260509 29261536 -114524919 - L1PA3 LINE L1 -1 6154 5128 1199 231 71 47 chr12 29261536 29261628 -114524827 + L1MCc LINE L1 2754 2842 -4099 1797 176 14 43 chr12 29261628 29261762 -114524693 - L1PA15 LINE L1 0 6165 6029 1859 174 0 25 chr12 29261762 29262078 -114524377 - AluSx SINE Alu -4 308 1 1797 176 14 43 chr12 29262078 29262290 -114524165 - L1PA15 LINE L1 -136 6029 5829 1199 231 71 47 chr12 29262290 29262659 -114523796 + L1MCc LINE L1 2842 3419 -3522 372 220 110 8 chr12 29262714 29262832 -114523623 + L1MCc LINE L1 3516 3645 -3296 890 165 100 39 chr12 29262835 29262874 -114523581 + L1MCc LINE L1 3760 3795 -3146 1357 224 29 45 chr12 29262874 29263254 -114523201 - MLT1A2 LTR MaLR 0 374 1 890 165 100 39 chr12 29263254 29263493 -114522962 + L1MCc LINE L1 3795 4055 -2886 228 35 0 0 chr12 29263632 29263661 -114522794 - L1P LINE L1 -971 5175 5147 5386 151 13 6 chr12 29263662 29264531 -114521924 - Tigger1 DNA MER2_type -1543 875 1 402 192 29 0 chr12 29264531 29264635 -114521820 + L1MC5 LINE L1 7679 7785 -176 201 328 52 26 chr12 29264709 29264825 -114521630 + L2 LINE L2 2932 3050 -222 879 305 34 36 chr12 29264951 29265345 -114521110 + LTR16A1 LTR ERVL 83 457 0 275 365 93 0 chr12 29265505 29265612 -114520843 + L2 LINE L2 3156 3272 0 2128 120 0 37 chr12 29265630 29265954 -114520501 - AluSx SINE Alu 0 312 1 25 0 0 0 chr12 29267441 29267466 -114518989 + AT_rich Low_complexity Low_complexity 1 25 0 950 148 31 0 chr12 29267504 29267666 -114518789 + L1MC3 LINE L1 6279 6445 -1340 1195 270 87 37 chr12 29267748 29268229 -114518226 - LTR33 LTR ERVL -16 505 1 353 385 62 5 chr12 29269471 29269666 -114516789 + MIR SINE MIR 2 207 -55 411 319 51 7 chr12 29270368 29270506 -114515949 + MER5B DNA MER1_type 24 167 -11 11022 140 28 60 chr12 29270539 29272395 -114514060 + Tigger1 DNA MER2_type 1 1778 -640 2262 84 3 7 chr12 29272395 29272693 -114513762 + AluY SINE Alu 12 308 -3 11022 140 28 60 chr12 29272693 29273014 -114513441 + Tigger1 DNA MER2_type 1778 2108 -310 512 366 0 0 chr12 29273242 29273373 -114513082 + T-rich Low_complexity Low_complexity 1 131 0 292 289 0 11 chr12 29273372 29273462 -114512993 + C-rich Low_complexity Low_complexity 3 91 0 * 218 179 0 0 chr12 29273779 29273818 -114512637 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 273 288 129 30 chr12 29273837 29273969 -114512486 + MIR SINE MIR 84 228 -34 670 154 31 154 chr12 29274158 29274245 -114512210 - MER3 DNA MER1_type -9 200 104 638 216 0 0 chr12 29274245 29274370 -114512085 + FLAM_C SINE Alu 2 126 -7 670 154 31 154 chr12 29274370 29274509 -114511946 - MER3 DNA MER1_type -105 104 2 24 0 0 0 chr12 29275507 29275531 -114510924 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 29275830 29275859 -114510596 + AT_rich Low_complexity Low_complexity 1 29 0 1019 39 13 32 chr12 29277780 29277935 -114508520 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 21 57 0 0 chr12 29278514 29278549 -114507906 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 29278823 29278865 -114507590 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr12 29279001 29279036 -114507419 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 69 23 chr12 29279230 29279446 -114507009 - L3b LINE CR1 -115 1468 1243 265 344 40 32 chr12 29279654 29279779 -114506676 + MIR3 SINE MIR 42 167 -41 186 43 0 0 chr12 29279982 29280005 -114506450 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 29280071 29280096 -114506359 + AT_rich Low_complexity Low_complexity 1 25 0 42 81 0 0 chr12 29280102 29280176 -114506279 + GC_rich Low_complexity Low_complexity 1 74 0 198 0 0 0 chr12 29280197 29280219 -114506236 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr12 29280316 29280341 -114506114 + AT_rich Low_complexity Low_complexity 1 25 0 309 204 0 120 chr12 29280667 29280775 -114505680 - MLT1L LTR MaLR -328 287 193 1082 246 3 42 chr12 29280959 29281244 -114505211 + MER93b LTR ERV1 98 371 -2 1813 182 30 43 chr12 29281285 29281680 -114504775 + MLT1B LTR MaLR 1 390 0 319 337 34 29 chr12 29281690 29281865 -114504590 + MER20B DNA MER1_type 2 177 -606 505 278 62 0 chr12 29282982 29283223 -114503232 - L1MEc LINE L1 -4102 2294 2039 570 102 278 9 chr12 29283231 29283339 -114503116 - L1MA3 LINE L1 -1 6304 6168 3005 242 61 18 chr12 29283513 29284844 -114501611 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29284840 29285828 -114500627 - L1MEc LINE L1 -4524 1872 810 * 3583 168 41 10 chr12 29285861 29286540 -114499915 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29286580 29287289 -114499166 - L1MEc LINE L1 -5652 744 32 2245 149 142 0 chr12 29289945 29290360 -114496095 - MER101 LTR ERV1 0 474 1 283 339 103 0 chr12 29290802 29290976 -114495479 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29292814 29293365 -114493090 - Charlie1a DNA MER1_type 0 1455 868 1706 249 55 31 chr12 29293421 29293971 -114492484 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29294311 29294420 -114492035 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29295042 29295062 -114491393 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29295467 29295495 -114490960 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29296734 29297406 -114489049 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29298038 29298170 -114488285 - Tigger2 DNA MER2_type -102 2616 2489 2328 117 0 0 chr12 29298170 29298477 -114487978 + AluSx SINE Alu 1 307 -5 1504 109 73 44 chr12 29298477 29298619 -114487836 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29298646 29298757 -114487698 + Tigger2 DNA MER2_type 2592 2702 -16 360 0 0 0 chr12 29298757 29298797 -114487658 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 29298797 29298821 -114487634 + AT_rich Low_complexity Low_complexity 1 24 0 292 320 72 40 chr12 29299725 29299850 -114486605 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29300328 29300359 -114486096 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29300377 29300593 -114485862 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29300787 29300925 -114485530 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29302118 29302532 -114483923 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29302539 29302760 -114483695 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29303891 29304191 -114482264 + AluSx SINE Alu 1 307 0 279 0 0 0 chr12 29305158 29305189 -114481266 + (T)n Simple_repeat Simple_repeat 1 31 0 29 0 0 0 chr12 29305252 29305281 -114481174 + AT_rich Low_complexity Low_complexity 1 29 0 670 134 0 0 chr12 29306651 29306782 -114479673 + FLAM_C SINE Alu 21 151 0 374 0 22 0 chr12 29306789 29306835 -114479620 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 1358 226 13 16 chr12 29306835 29307141 -114479314 + AluJo SINE Alu 3 307 -5 1067 152 6 0 chr12 29308415 29308580 -114477875 - AluJb SINE Alu -60 252 87 6395 32 3 0 chr12 29309518 29310854 -114475601 - L1PA3 LINE L1 -141 6014 4674 1420 179 0 82 chr12 29311228 29311418 -114475037 - AluJb SINE Alu 0 312 161 360 0 0 0 chr12 29311418 29311458 -114474997 + (TA)n Simple_repeat Simple_repeat 2 41 0 1420 179 0 82 chr12 29311458 29311607 -114474848 - AluJb SINE Alu -151 161 1 23 33 0 0 chr12 29312779 29312809 -114473646 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 29313330 29313360 -114473095 + AT_rich Low_complexity Low_complexity 1 30 0 396 321 34 83 chr12 29314693 29314958 -114471497 + MIR SINE MIR 10 261 -1 418 137 0 27 chr12 29315375 29315448 -114471007 - THE1C LTR MaLR 0 375 305 895 180 47 33 chr12 29315552 29315763 -114470692 - L1MA7 LINE L1 -212 6079 5866 502 265 74 6 chr12 29315778 29315940 -114470515 - MIR SINE MIR -39 223 51 231 250 0 19 chr12 29316004 29316056 -114470399 - MER45 DNA AcHobo 0 1581 1531 22 56 0 0 chr12 29316454 29316490 -114469965 + AT_rich Low_complexity Low_complexity 1 36 0 2370 165 70 6 chr12 29317076 29317573 -114468882 + L1PB4 LINE L1 5628 6156 0 197 253 0 84 chr12 29317779 29317862 -114468593 + MIR SINE MIR 36 111 -151 3676 148 34 14 chr12 29318280 29318416 -114468039 + L1MB3 LINE L1 5463 5595 -588 2490 57 0 3 chr12 29318416 29318716 -114467739 + AluY SINE Alu 1 299 -12 3676 148 34 14 chr12 29318716 29319282 -114467173 + L1MB3 LINE L1 5595 6179 -4 2278 106 137 8 chr12 29322328 29322707 -114463748 - MSTA LTR MaLR 0 428 1 3988 127 55 13 chr12 29324443 29325154 -114461301 - L1MC1 LINE L1 0 6333 5593 259 247 0 45 chr12 29325155 29325244 -114461211 - L1M4 LINE L1 -1834 4312 4228 536 345 42 71 chr12 29325244 29325580 -114460875 - L2 LINE L2 -28 3244 2919 751 275 170 31 chr12 29325615 29325997 -114460458 + LTR16A LTR ERVL 1 435 -15 1246 266 141 16 chr12 29326011 29326459 -114459996 + HERV16 LTR ERVL 2 505 -4491 1229 311 45 13 chr12 29326456 29326926 -114459529 + HERV16 LTR ERVL 1084 1568 -3428 * 689 255 27 27 chr12 29326997 29327165 -114459290 + HERV16 LTR ERVL 1719 1889 -3107 1422 143 124 70 chr12 29327165 29327521 -114458934 + THE1C LTR MaLR 1 375 0 689 255 27 27 chr12 29327521 29327540 -114458915 + HERV16 LTR ERVL 1888 1906 -3090 403 241 0 0 chr12 29327668 29327747 -114458708 + MER58B DNA MER1_type 261 339 -2 714 310 47 40 chr12 29327747 29328044 -114458411 + HERV16 LTR ERVL 2319 2617 -2379 1517 275 33 26 chr12 29328122 29328613 -114457842 + MLT1J LTR MaLR 18 511 0 187 250 36 80 chr12 29328629 29328741 -114457714 - L2 LINE L2 -919 2395 2289 534 113 0 0 chr12 29330154 29330234 -114456221 - AluSp/q SINE Alu -14 299 220 989 233 88 91 chr12 29330234 29330658 -114455797 + MLT1G3 LTR MaLR 138 555 0 772 308 47 44 chr12 29330663 29331280 -114455175 - L1M4 LINE L1 -2051 4095 3477 5186 153 20 34 chr12 29331596 29331920 -114454535 - MER54A LTR ERVL 0 901 574 2538 122 25 37 chr12 29331920 29332353 -114454102 - MSTA LTR MaLR 0 428 1 5186 153 20 34 chr12 29332353 29332942 -114453513 - MER54A LTR ERVL -327 574 1 2094 147 0 6 chr12 29333013 29333327 -114453128 - AluSx SINE Alu 0 312 1 2913 160 51 74 chr12 29333327 29334164 -114452291 - MER57B-int LTR ERV1 -3384 4153 3336 364 107 36 0 chr12 29334141 29334197 -114452258 - MER57B-int LTR ERV1 -3722 2224 2167 * 730 136 0 8 chr12 29334193 29334311 -114452144 - MER57B-int LTR ERV1 -3929 2017 1901 572 176 14 47 chr12 29334314 29334462 -114451993 - MER57B-int LTR ERV1 -5183 2354 2212 * 4699 148 17 16 chr12 29334446 29335805 -114450650 - MER57B-int LTR ERV1 -5061 885 1 2762 114 21 7 chr12 29335805 29336233 -114450222 - MER57B LTR ERV1 0 434 1 271 278 56 69 chr12 29336428 29336572 -114449883 - L2 LINE L2 -4 3309 3168 3039 192 82 2 chr12 29336573 29337161 -114449294 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7487 160 60 14 chr12 29337159 29338485 -114447970 + ERVL-B1 LTR ERVL 4359 5745 -19 1676 238 46 54 chr12 29338486 29339008 -114447447 + MLT2B1 LTR ERVL 1 518 -2 356 243 56 0 chr12 29340551 29340655 -114445800 + L1ME LINE L1 5723 5819 -347 2970 217 103 13 chr12 29342067 29342293 -114444162 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 29342293 29342348 -114444107 + (TG)n Simple_repeat Simple_repeat 2 56 0 2970 217 103 13 chr12 29342348 29343024 -114443431 - L1ME1 LINE L1 -236 5999 5219 292 62 25 173 chr12 29343018 29343066 -114443389 - L1MB3 LINE L1 -2 6181 6148 * 2190 109 0 7 chr12 29343066 29343370 -114443085 - AluY SINE Alu -9 302 1 292 62 25 173 chr12 29343370 29343402 -114443053 - L1MB3 LINE L1 -35 6148 6113 1355 259 76 15 chr12 29343414 29343862 -114442593 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 29343862 29343885 -114442570 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1355 259 76 15 chr12 29343885 29344090 -114442365 - L1ME1 LINE L1 -4173 2042 1851 542 304 19 5 chr12 29344094 29344301 -114442154 - L1ME1 LINE L1 -4578 1818 1609 213 277 0 0 chr12 29345682 29345729 -114440726 - L2 LINE L2 -2 3311 3265 955 325 92 43 chr12 29345900 29346739 -114439716 - L2 LINE L2 -237 3035 2142 765 162 95 62 chr12 29346739 29346864 -114439591 + AluJo SINE Alu 29 163 -149 2531 106 6 3 chr12 29346864 29347224 -114439231 + THE1B LTR MaLR 1 361 -3 765 162 95 62 chr12 29347224 29347277 -114439178 + AluJo SINE Alu 163 213 -99 573 74 42 0 chr12 29347313 29347408 -114439047 + GA-rich Low_complexity Low_complexity 1 99 0 278 323 122 44 chr12 29347482 29347801 -114438654 - L2 LINE L2 -1217 2097 1754 420 153 0 31 chr12 29347808 29347906 -114438549 + CT-rich Low_complexity Low_complexity 3 97 0 2382 96 0 3 chr12 29348301 29348614 -114437841 - AluSx SINE Alu 0 312 1 2458 224 29 80 chr12 29349352 29350082 -114436373 - LTR8 LTR ERV1 0 691 2 4248 174 46 43 chr12 29350606 29352287 -114434168 - L1MA9 LINE L1 -40 6272 4590 924 166 43 0 chr12 29352306 29352469 -114433986 - L1PB4 LINE L1 -13 6143 5974 306 197 0 0 chr12 29352471 29352532 -114433923 - L1MC4 LINE L1 -1346 6696 6636 4788 37 0 0 chr12 29352535 29353096 -114433359 - L1PA5 LINE L1 -14 6140 5580 3977 152 25 6 chr12 29353098 29354130 -114432325 - L1PB4 LINE L1 -174 5982 4934 216 310 161 29 chr12 29354909 29355083 -114431372 - L2 LINE L2 -564 2750 2554 23 0 0 0 chr12 29356309 29356332 -114430123 + AT_rich Low_complexity Low_complexity 1 23 0 1362 164 96 14 chr12 29356716 29357148 -114429307 + LTR54 LTR ERV1 3 497 -1 29 0 0 0 chr12 29358774 29358803 -114427652 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr12 29358810 29358838 -114427617 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 29358905 29358950 -114427505 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr12 29358975 29359000 -114427455 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr12 29359830 29359879 -114426576 + AT_rich Low_complexity Low_complexity 1 49 0 30 27 0 0 chr12 29360525 29360562 -114425893 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 29361521 29361555 -114424900 + AT_rich Low_complexity Low_complexity 1 34 0 2364 42 3 7 chr12 29361995 29362282 -114424173 + AluY SINE Alu 1 286 -25 37 0 0 0 chr12 29362282 29362319 -114424136 + AT_rich Low_complexity Low_complexity 1 37 0 203 275 72 29 chr12 29362368 29362437 -114424018 - L2 LINE L2 0 3313 3242 571 233 54 83 chr12 29362550 29362790 -114423665 + L1ME3A LINE L1 5928 6160 -10 301 327 163 42 chr12 29362887 29363367 -114423088 + L2 LINE L2 1826 2363 -951 2279 104 0 16 chr12 29364422 29364739 -114421716 + AluSq SINE Alu 1 312 -1 260 339 81 5 chr12 29364987 29365173 -114421282 - L1ME LINE L1 -393 5728 5529 2072 132 0 0 chr12 29365191 29365479 -114420976 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr12 29365482 29365507 -114420948 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 305 327 42 24 chr12 29365632 29365797 -114420658 - HAL1b LINE L1 -554 794 627 292 306 12 0 chr12 29366022 29366107 -114420348 - HAL1b LINE L1 -758 590 505 798 196 14 0 chr12 29366353 29366496 -114419959 + FRAM SINE Alu 11 155 -21 23 33 0 0 chr12 29367122 29367152 -114419303 + AT_rich Low_complexity Low_complexity 1 30 0 762 184 8 0 chr12 29367181 29367306 -114419149 + AluJo/FLAM SINE Alu 5 130 -172 1441 186 10 44 chr12 29367307 29367603 -114418852 + AluJo SINE Alu 1 286 -26 202 146 24 0 chr12 29367610 29367651 -114418804 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chr12 29367994 29368036 -114418419 + AT_rich Low_complexity Low_complexity 1 42 0 400 256 8 45 chr12 29368700 29368833 -114417622 + L1M3 LINE L1 4527 4654 -1492 669 133 0 19 chr12 29368834 29368971 -114417484 + FRAM SINE Alu 58 176 0 3033 176 32 23 chr12 29368971 29369288 -114417167 + L1M3 LINE L1 4648 4961 -1219 1490 158 93 91 chr12 29369288 29369719 -114416736 + MSTB1 LTR MaLR 1 432 0 3033 176 32 23 chr12 29369719 29370254 -114416201 + L1M3 LINE L1 4961 5508 -672 231 286 91 0 chr12 29370484 29370561 -114415894 - MER91C DNA MER1_type -34 106 23 21 0 0 0 chr12 29370833 29370854 -114415601 + AT_rich Low_complexity Low_complexity 1 21 0 1691 167 65 3 chr12 29370856 29371149 -114415306 + AluSx SINE Alu 1 311 -1 3723 185 101 61 chr12 29371349 29372265 -114414190 + Tigger3b DNA MER2_type 1 977 -2051 2143 122 0 3 chr12 29372265 29372559 -114413896 - AluSx SINE Alu -19 293 1 3723 185 101 61 chr12 29372559 29372825 -114413630 + Tigger3b DNA MER2_type 977 1231 0 303 223 68 10 chr12 29373842 29373945 -114412510 - L1ME4a LINE L1 -16 6105 5997 313 301 124 13 chr12 29374377 29374530 -114411925 + MIR SINE MIR 90 259 -3 30 27 0 0 chr12 29376234 29376271 -114410184 + AT_rich Low_complexity Low_complexity 1 37 0 1753 117 23 0 chr12 29377897 29378153 -114408302 - AluSg SINE Alu -4 306 45 998 171 6 0 chr12 29378400 29378558 -114407897 + FRAM SINE Alu 1 158 -18 202 262 0 95 chr12 29378559 29378643 -114407812 + L2 LINE L2 3194 3269 -3 212 0 36 0 chr12 29378703 29378731 -114407724 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 333 167 0 0 chr12 29380147 29380219 -114406236 - AluJo SINE Alu 0 306 235 832 226 6 0 chr12 29380224 29380392 -114406063 - AluJo SINE Alu -143 169 1 687 142 61 68 chr12 29380392 29380540 -114405915 - L1MC2 LINE L1 -13 6331 6185 264 221 263 11 chr12 29380540 29380635 -114405820 + MER34 LTR ERV1 1 119 -423 1364 196 70 42 chr12 29380642 29381062 -114405393 + MER39 LTR ERV1 80 566 -19 492 206 0 56 chr12 29381712 29381819 -114404636 + FRAM SINE Alu 1 101 -75 242 54 0 27 chr12 29381836 29381873 -114404582 + (GAA)n Simple_repeat Simple_repeat 2 37 0 328 295 0 18 chr12 29382282 29382394 -114404061 + MIR SINE MIR 86 195 -67 278 357 140 0 chr12 29382440 29382583 -114403872 + MIR SINE MIR 36 198 -64 738 218 124 25 chr12 29382655 29382857 -114403598 - MIR SINE MIR -11 251 30 211 370 76 0 chr12 29383613 29383705 -114402750 + MIR SINE MIR 50 148 -114 360 237 5 106 chr12 29383775 29383973 -114402482 + MIR SINE MIR 5 179 -63 269 277 31 0 chr12 29383977 29384042 -114402413 - MIR SINE MIR -82 180 114 196 259 0 17 chr12 29384228 29384286 -114402169 + MIR3 SINE MIR 142 198 -10 491 259 138 52 chr12 29385546 29385778 -114400677 + MIR SINE MIR 11 262 0 629 249 94 11 chr12 29386123 29386304 -114400151 + MIR SINE MIR 67 262 0 380 280 72 32 chr12 29386319 29386444 -114400011 - MIR3 SINE MIR -64 144 15 883 290 39 24 chr12 29387496 29387751 -114398704 + MIR SINE MIR 4 262 0 248 319 44 26 chr12 29387850 29387963 -114398492 - L2 LINE L2 0 3313 3199 288 290 214 15 chr12 29388071 29388202 -114398253 - MIR SINE MIR -86 176 20 434 319 19 19 chr12 29388863 29389020 -114397435 + L2 LINE L2 2293 2449 -865 457 294 18 31 chr12 29389924 29390087 -114396368 + MIR SINE MIR 76 236 -26 381 273 84 44 chr12 29390266 29390515 -114395940 - HAL1 LINE L1 -10 2497 2239 405 0 0 0 chr12 29390516 29390561 -114395894 + (CA)n Simple_repeat Simple_repeat 2 46 0 276 254 52 75 chr12 29390590 29390700 -114395755 - HAL1 LINE L1 -349 2158 2054 1639 184 13 67 chr12 29390700 29391086 -114395369 - MLT1A1 LTR MaLR 0 365 1 276 254 52 75 chr12 29391086 29391188 -114395267 - HAL1 LINE L1 -453 2054 1951 372 288 120 0 chr12 29391196 29391321 -114395134 - HAL1 LINE L1 -2367 140 1 1791 187 44 6 chr12 29391804 29392147 -114394308 - MLT1A1 LTR MaLR 0 365 10 2194 110 7 0 chr12 29392396 29392687 -114393768 - AluSx SINE Alu -19 293 1 180 256 23 0 chr12 29393681 29393724 -114392731 - L2 LINE L2 -9 3304 3261 54 49 0 0 chr12 29393813 29393895 -114392560 + AT_rich Low_complexity Low_complexity 1 82 0 287 285 26 20 chr12 29394340 29394510 -114391945 + L1M4 LINE L1 5256 5425 -746 210 271 0 0 chr12 29395763 29395811 -114390644 + T-rich Low_complexity Low_complexity 1 48 0 258 233 17 26 chr12 29395823 29395939 -114390516 + T-rich Low_complexity Low_complexity 3 117 0 8933 103 50 5 chr12 29396075 29397180 -114389275 - MER57-int LTR ERV1 -1905 5632 4447 2281 83 0 21 chr12 29397180 29397491 -114388964 - AluY SINE Alu 0 305 1 8933 103 50 5 chr12 29397491 29397797 -114388658 - MER57-int LTR ERV1 -3090 4447 4156 180 0 0 0 chr12 29397819 29397839 -114388616 + (TTC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr12 29397957 29397978 -114388477 + GC_rich Low_complexity Low_complexity 1 21 0 201 319 0 0 chr12 29398014 29398083 -114388372 + C-rich Low_complexity Low_complexity 2 70 0 5079 112 12 1 chr12 29398911 29399700 -114386755 + L1PA16 LINE L1 5217 6013 -153 291 349 0 14 chr12 29399709 29399855 -114386600 + CT-rich Low_complexity Low_complexity 2 145 0 636 191 24 0 chr12 29400035 29400161 -114386294 + L1PA16 LINE L1 6028 6156 -10 416 300 100 43 chr12 29401021 29401231 -114385224 - MLT1K LTR MaLR -6 582 361 228 286 92 20 chr12 29401407 29401505 -114384950 - MLT1L LTR MaLR -424 191 87 1548 142 68 84 chr12 29401647 29402028 -114384427 + THE1C LTR MaLR 1 375 0 228 324 0 0 chr12 29402095 29402197 -114384258 + A-rich Low_complexity Low_complexity 1 102 0 2180 103 7 0 chr12 29402243 29402534 -114383921 + AluSp SINE Alu 1 293 -20 313 219 9 76 chr12 29404238 29404343 -114382112 + LTR52 LTR ERVL 12 109 -312 1215 253 30 10 chr12 29404371 29404675 -114381780 + LTR52 LTR ERVL 112 421 0 2004 175 31 0 chr12 29404714 29405068 -114381387 + MLT1A1 LTR MaLR 1 365 0 910 181 19 0 chr12 29405183 29405343 -114381112 - AluJb SINE Alu -14 298 136 215 352 107 67 chr12 29405382 29405635 -114380820 + L2 LINE L2 2553 2815 -499 236 368 48 72 chr12 29405763 29406013 -114380442 + L2 LINE L2 2946 3189 -83 1450 143 16 6 chr12 29406155 29406656 -114379799 + L1MB8 LINE L1 5511 6117 -61 304 249 109 61 chr12 29406810 29406975 -114379480 + MIR SINE MIR 90 262 0 201 300 12 62 chr12 29407130 29407210 -114379245 - L2 LINE L2 -9 3263 3188 433 326 0 23 chr12 29407607 29407739 -114378716 + L2 LINE L2 3182 3310 -3 202 286 0 16 chr12 29408133 29408196 -114378259 - L2 LINE L2 -3 3269 3208 332 319 113 53 chr12 29408439 29408925 -114377530 - L1M2 LINE L1 -5802 1047 533 285 224 72 53 chr12 29410867 29410887 -114375568 - L1MA10 LINE L1 0 6334 6315 2994 195 76 37 chr12 29410887 29411436 -114375019 - L1ME1 LINE L1 -4 6660 6134 2292 111 0 0 chr12 29411436 29411743 -114374712 + AluSc SINE Alu 1 307 -2 2994 195 76 37 chr12 29411743 29412358 -114374097 - L1ME1 LINE L1 -530 6134 5445 195 42 0 0 chr12 29412358 29412382 -114374073 + (TC)n Simple_repeat Simple_repeat 2 25 0 2994 195 76 37 chr12 29412382 29412442 -114374013 - L1ME1 LINE L1 -1219 5445 5389 2203 105 0 0 chr12 29412444 29412740 -114373715 - LTR12 LTR ERV1 0 714 419 4578 104 77 65 chr12 29412740 29413556 -114372899 - LTR12 LTR ERV1 0 826 1 1740 260 87 55 chr12 29413558 29413950 -114372505 - L1ME1 LINE L1 -1247 5397 5019 1724 173 7 0 chr12 29413950 29414234 -114372221 + AluJb SINE Alu 13 298 -14 1740 260 87 55 chr12 29414234 29414800 -114371655 - L1ME1 LINE L1 -1625 5019 4409 308 289 101 0 chr12 29414792 29414941 -114371514 - L1ME4a LINE L1 -3 6118 5955 * 188 238 63 16 chr12 29415348 29415411 -114371044 - MIR3 SINE MIR -6 202 137 389 336 78 5 chr12 29415551 29415768 -114370687 - MIR SINE MIR -29 233 1 23 54 0 0 chr12 29415795 29415832 -114370623 + AT_rich Low_complexity Low_complexity 1 37 0 6620 212 70 71 chr12 29416766 29417036 -114369419 - L1ME1 LINE L1 -3896 2748 2479 1665 164 38 7 chr12 29417036 29417328 -114369127 - AluJo SINE Alu -11 301 1 6620 212 70 71 chr12 29417328 29418394 -114368061 - L1ME1 LINE L1 -4165 2479 1413 207 0 0 0 chr12 29418394 29418417 -114368038 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6569 77 29 22 chr12 29418417 29420119 -114366336 - SVA Other Other -590 1368 71 243 0 0 0 chr12 29420119 29420146 -114366309 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 6620 212 70 71 chr12 29420146 29421492 -114364963 - L1ME1 LINE L1 -5228 1416 2 2431 147 51 2 chr12 29423579 29423993 -114362462 - MER57B LTR ERV1 0 434 1 1026 110 8 30 chr12 29423994 29424218 -114362237 - MER57B-int LTR ERV1 -1 7536 7279 713 123 23 31 chr12 29424218 29424348 -114362107 - LTR54B LTR ERV1 -367 131 3 22703 127 48 32 chr12 29424348 29426910 -114359545 - MER57B-int LTR ERV1 -389 7148 4627 2246 83 0 21 chr12 29426910 29427221 -114359234 - AluY SINE Alu 0 305 1 22703 127 48 32 chr12 29427221 29427550 -114358905 - MER57B-int LTR ERV1 -2910 4627 4305 1827 127 55 0 chr12 29427550 29427846 -114358609 - AluSq SINE Alu 0 311 1 22703 127 48 32 chr12 29427846 29430324 -114356131 - MER57B-int LTR ERV1 -3232 4305 1 2750 114 21 7 chr12 29430324 29430752 -114355703 - MER57B LTR ERV1 0 434 1 277 278 56 69 chr12 29430947 29431091 -114355364 - L2 LINE L2 -4 3309 3168 3028 192 82 2 chr12 29431092 29431680 -114354775 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7500 160 60 14 chr12 29431678 29433004 -114353451 + ERVL-B1 LTR ERVL 4359 5745 -19 1674 238 46 54 chr12 29433005 29433527 -114352928 + MLT2B1 LTR ERVL 1 518 -2 367 243 56 0 chr12 29435069 29435173 -114351282 + L1ME LINE L1 5723 5819 -347 3016 217 103 13 chr12 29436585 29436811 -114349644 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 29436811 29436866 -114349589 + (TG)n Simple_repeat Simple_repeat 2 56 0 3016 217 103 13 chr12 29436866 29437542 -114348913 - L1ME1 LINE L1 -236 5999 5219 299 62 25 173 chr12 29437536 29437584 -114348871 - L1MB3 LINE L1 -2 6181 6148 * 2286 92 0 7 chr12 29437584 29437888 -114348567 - AluY SINE Alu -9 302 1 299 62 25 173 chr12 29437888 29437920 -114348535 - L1MB3 LINE L1 -35 6148 6113 1414 259 76 15 chr12 29437932 29438380 -114348075 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 29438380 29438403 -114348052 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1414 259 76 15 chr12 29438403 29438608 -114347847 - L1ME1 LINE L1 -4173 2042 1851 3179 286 87 18 chr12 29438612 29440170 -114346285 - L1ME1 LINE L1 -4578 1818 153 219 88 0 0 chr12 29440405 29440439 -114346016 + (TGG)n Simple_repeat Simple_repeat 2 35 0 391 340 31 19 chr12 29443042 29443204 -114343251 - MIR3 SINE MIR -29 179 16 2147 100 0 20 chr12 29443573 29443872 -114342583 - AluSq SINE Alu -20 293 1 380 328 29 23 chr12 29443877 29444048 -114342407 + MLT1L LTR MaLR 46 217 -398 395 232 86 55 chr12 29444062 29444278 -114342177 + MLT1L LTR MaLR 345 605 0 2999 143 33 133 chr12 29444658 29445453 -114341002 - L1MC3 LINE L1 -9 7776 7062 299 350 137 6 chr12 29445958 29446141 -114340314 + MIR SINE MIR 56 262 0 208 386 68 11 chr12 29446480 29446568 -114339887 + L2 LINE L2 3128 3220 -52 467 310 130 5 chr12 29446610 29446826 -114339629 - L3 LINE CR1 -82 1495 1253 482 261 32 13 chr12 29446933 29447090 -114339365 - Charlie7 DNA MER1_type -5 2607 2448 432 312 304 11 chr12 29447410 29447769 -114338686 - L2 LINE L2 0 3313 2850 279 282 19 48 chr12 29447782 29447885 -114338570 - MLT1K LTR MaLR -290 298 199 1875 149 3 3 chr12 29448745 29449040 -114337415 - AluJb SINE Alu -17 295 1 231 204 0 37 chr12 29449961 29450015 -114336440 + LTR43 LTR ERV1 100 151 -451 1233 96 48 0 chr12 29450941 29451108 -114335347 + AluSg/x SINE Alu 128 302 -10 1009 218 31 60 chr12 29451194 29451511 -114334944 - L1ME2 LINE L1 -6 6158 5851 643 144 42 0 chr12 29452047 29452165 -114334290 - L1MB3 LINE L1 -31 6152 6030 461 217 57 0 chr12 29452989 29453095 -114333360 - MLT1G LTR MaLR -7 548 437 746 247 69 52 chr12 29453139 29453430 -114333025 - MLT1G LTR MaLR -292 298 3 24 32 0 0 chr12 29454486 29454517 -114331938 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr12 29454657 29454691 -114331764 + AT_rich Low_complexity Low_complexity 1 34 0 312 27 0 0 chr12 29455345 29455382 -114331073 + (CA)n Simple_repeat Simple_repeat 2 38 0 1958 197 64 37 chr12 29455397 29455884 -114330571 + MLT1D LTR MaLR 1 500 -5 515 276 103 76 chr12 29456239 29456952 -114329503 + L1MC4a LINE L1 5193 5826 -352 2119 124 3 3 chr12 29456953 29457251 -114329204 + AluSx SINE Alu 1 298 -14 238 364 68 0 chr12 29457519 29457637 -114328818 + L1ME LINE L1 5531 5656 -465 297 215 183 21 chr12 29458313 29458499 -114327956 - L1MCc LINE L1 -4887 1536 1321 2888 171 18 52 chr12 29458711 29459341 -114327114 - L1MD1 LINE L1 -314 5928 5321 427 226 0 0 chr12 29459345 29459429 -114327026 + L1M4 LINE L1 2676 2759 -3387 236 250 33 0 chr12 29459421 29459481 -114326974 - L1MD1 LINE L1 -2511 3635 3574 * 465 265 58 12 chr12 29459665 29459829 -114326626 - L1P4 LINE L1 -388 5773 5601 2191 112 3 6 chr12 29459831 29460143 -114326312 + AluSx SINE Alu 2 312 0 5138 153 20 34 chr12 29460214 29460803 -114325652 + MER54A LTR ERVL 1 574 -327 2503 122 25 37 chr12 29460803 29461236 -114325219 + MSTA LTR MaLR 1 428 0 5138 153 20 34 chr12 29461236 29461560 -114324895 + MER54A LTR ERVL 574 901 0 825 308 47 44 chr12 29461876 29462493 -114323962 + L1ME3A LINE L1 3477 4095 -2051 987 233 88 91 chr12 29462498 29462922 -114323533 - MLT1G3 LTR MaLR 0 530 138 589 88 0 0 chr12 29462922 29463002 -114323453 + AluSp/q SINE Alu 220 299 -14 609 280 156 26 chr12 29463426 29464301 -114322154 + L1ME3A LINE L1 4932 5945 -225 380 273 33 8 chr12 29465081 29465202 -114321253 - MIR3 SINE MIR -3 205 82 1337 309 118 41 chr12 29465245 29465314 -114321141 - L2 LINE L2 -468 2846 2784 2381 76 0 0 chr12 29465314 29465616 -114320839 + AluY SINE Alu 1 302 -9 1337 309 118 41 chr12 29465616 29465850 -114320605 - L2 LINE L2 -530 2784 2569 2174 134 3 18 chr12 29465850 29466192 -114320263 - MER1B DNA MER1_type 0 337 1 1337 309 118 41 chr12 29466192 29466879 -114319576 - L2 LINE L2 -745 2569 1936 194 91 30 0 chr12 29466879 29466912 -114319543 + T-rich Low_complexity Low_complexity 2 35 0 1337 309 118 41 chr12 29466912 29467369 -114319086 - L2 LINE L2 -1378 1936 1211 257 295 9 48 chr12 29468824 29468929 -114317526 - L2 LINE L2 -3 3310 3210 324 0 0 0 chr12 29469069 29469105 -114317350 + (TG)n Simple_repeat Simple_repeat 2 37 0 3366 235 97 52 chr12 29469769 29470950 -114315505 - HAL1 LINE L1 -469 2038 770 877 245 43 12 chr12 29470950 29471203 -114315252 - MIR SINE MIR 0 262 2 3366 235 97 52 chr12 29471203 29471564 -114314891 - HAL1 LINE L1 -1737 770 427 23 0 0 0 chr12 29472660 29472683 -114313772 + AT_rich Low_complexity Low_complexity 1 23 0 2127 99 7 14 chr12 29472888 29473182 -114313273 - AluSq SINE Alu -12 301 10 552 146 0 0 chr12 29474235 29474331 -114312124 - L1PA13 LINE L1 -6 6157 6062 221 316 0 25 chr12 29475971 29476050 -114310405 + MIR SINE MIR 17 93 -115 21 0 0 0 chr12 29477212 29477233 -114309222 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 29477949 29478007 -114308448 + AT_rich Low_complexity Low_complexity 1 58 0 209 330 113 10 chr12 29478166 29478263 -114308192 - L2 LINE L2 -2 3311 3205 330 316 14 36 chr12 29478737 29478876 -114307579 + L2 LINE L2 3177 3312 -1 209 308 236 25 chr12 29479198 29479714 -114306741 - L2 LINE L2 -825 2489 1865 207 114 0 0 chr12 29479941 29479976 -114306479 + (CA)n Simple_repeat Simple_repeat 1 35 0 496 63 0 38 chr12 29481348 29481427 -114305028 - L1MB2 LINE L1 -2 6169 6094 2153 141 35 1 chr12 29481434 29481802 -114304653 - L1MB3 LINE L1 -143 6040 5658 30 0 0 0 chr12 29482464 29482494 -114303961 + AT_rich Low_complexity Low_complexity 1 30 0 273 197 0 0 chr12 29482627 29482693 -114303762 + (TA)n Simple_repeat Simple_repeat 1 66 0 321 47 0 0 chr12 29482693 29482736 -114303719 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 241 0 35 chr12 29482914 29482972 -114303483 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 206 343 71 20 chr12 29484420 29484519 -114301936 + MIR3 SINE MIR 90 193 -15 349 294 117 0 chr12 29485384 29485581 -114300874 - L1MC4a LINE L1 -1902 5906 5687 32 26 0 0 chr12 29485770 29485809 -114300646 + AT_rich Low_complexity Low_complexity 1 39 0 204 89 24 73 chr12 29485809 29485933 -114300522 + (TTA)n Simple_repeat Simple_repeat 3 120 0 252 134 85 0 chr12 29485943 29486025 -114300430 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 2038 119 0 3 chr12 29486034 29486320 -114300135 - AluSg SINE Alu -25 285 1 281 207 35 46 chr12 29486324 29486411 -114300044 + L1ME LINE L1 5782 5867 -303 214 400 0 7 chr12 29486710 29486845 -114299610 + CT-rich Low_complexity Low_complexity 2 135 0 370 296 90 101 chr12 29487020 29487497 -114298958 - L1M2 LINE L1 -5604 1245 506 232 185 19 70 chr12 29487573 29487730 -114298725 + (TTA)n Simple_repeat Simple_repeat 1 149 0 * 252 134 85 0 chr12 29487678 29487760 -114298695 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 2035 119 0 3 chr12 29487769 29488055 -114298400 - AluSg SINE Alu -25 285 1 329 233 12 12 chr12 29488059 29488145 -114298310 + L1ME3A LINE L1 5782 5867 -303 294 274 80 74 chr12 29489063 29489238 -114297217 + L2 LINE L2 2486 2661 -653 36 70 0 0 chr12 29489708 29489779 -114296676 + AT_rich Low_complexity Low_complexity 1 71 0 189 336 178 9 chr12 29490420 29490527 -114295928 + L3b LINE CR1 1407 1531 -52 212 318 206 0 chr12 29490562 29490669 -114295786 - L2 LINE L2 -7 3265 3137 268 271 170 14 chr12 29490921 29491279 -114295176 - L1MEc LINE L1 -2928 3201 2788 188 153 41 31 chr12 29491527 29491625 -114294830 + (TA)n Simple_repeat Simple_repeat 1 99 0 328 298 87 80 chr12 29491651 29491963 -114294492 - L1MEc LINE L1 -4752 1558 1245 244 249 99 103 chr12 29492008 29492281 -114294174 - L1MEc LINE L1 -4910 1209 938 10682 40 0 0 chr12 29492533 29494601 -114291854 - L1PA4 LINE L1 -1 6154 4086 9597 36 0 1 chr12 29494601 29495785 -114290670 + L1PA4 LINE L1 2926 4110 -2036 216 204 20 0 chr12 29495888 29495937 -114290518 + (TATG)n Simple_repeat Simple_repeat 1 50 0 657 171 89 0 chr12 29497143 29497266 -114289189 + MER46A DNA MER2_type 2 135 -101 362 161 18 0 chr12 29497274 29497330 -114289125 + MER46A DNA MER2_type 180 236 0 228 402 31 0 chr12 29497675 29497802 -114288653 + L2 LINE L2 2919 3049 -223 356 344 0 16 chr12 29498327 29498452 -114288003 + L2 LINE L2 2847 2969 -303 528 257 86 7 chr12 29498465 29498605 -114287850 + MIR SINE MIR 40 190 -72 1489 233 7 0 chr12 29500389 29500689 -114285766 + AluJo SINE Alu 1 302 -10 1131 211 98 50 chr12 29500919 29501298 -114285157 - MLT2C1 LTR ERVL 0 397 1 2745 118 5 0 chr12 29501990 29502398 -114284057 - L1PB3 LINE L1 -186 5968 5559 * 3548 212 11 9 chr12 29502394 29503235 -114283220 - L1PB3 LINE L1 -989 5157 4316 1720 171 55 9 chr12 29503265 29503609 -114282846 - MER46B DNA MER2_type -1 235 1 2252 108 3 3 chr12 29504063 29504369 -114282086 + AluSp SINE Alu 1 306 -7 206 345 64 47 chr12 29504692 29504863 -114281592 + MIR3 SINE MIR 7 180 -28 235 325 154 5 chr12 29505585 29505758 -114280697 - MIR SINE MIR -50 212 20 16054 175 19 12 chr12 29505899 29509373 -114277082 - L1PA13 LINE L1 -3 6160 2660 2515 58 0 6 chr12 29509373 29509684 -114276771 - AluY SINE Alu -2 309 1 16054 175 19 12 chr12 29509684 29510335 -114276120 - L1PA13 LINE L1 -3503 2660 2015 9301 106 7 0 chr12 29510709 29511987 -114274468 - HSMAR1 DNA Mariner 0 1287 1 817 159 0 29 chr12 29513421 29513559 -114272896 - FRAM SINE Alu -16 160 27 1446 145 66 84 chr12 29513975 29514284 -114272171 + THE1C LTR MaLR 1 303 -72 2120 129 0 0 chr12 29514284 29514578 -114271877 - AluSq SINE Alu -19 294 1 1446 145 66 84 chr12 29514578 29514648 -114271807 + THE1C LTR MaLR 303 373 -2 906 185 165 53 chr12 29514675 29515032 -114271423 + LTR37A LTR ERV1 26 422 -4 33 0 0 0 chr12 29515211 29515244 -114271211 + AT_rich Low_complexity Low_complexity 1 33 0 211 125 42 21 chr12 29515718 29515766 -114270689 + T-rich Low_complexity Low_complexity 2 50 0 50 41 0 31 chr12 29515817 29515914 -114270541 + AT_rich Low_complexity Low_complexity 1 94 0 226 148 56 0 chr12 29516299 29516353 -114270102 + (TA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr12 29518429 29518449 -114268006 + (CAA)n Simple_repeat Simple_repeat 2 21 0 538 298 74 4 chr12 29518490 29518748 -114267707 - L1ME3A LINE L1 -221 5949 5674 532 184 0 0 chr12 29518899 29519002 -114267453 - L1MC4 LINE L1 -22 8020 7918 957 213 94 63 chr12 29519033 29519447 -114267008 - L1MC4a LINE L1 -1440 6762 6336 277 179 62 131 chr12 29519443 29519588 -114266867 - L1MC4a LINE L1 -2420 5782 5648 * 1175 295 75 67 chr12 29519632 29521401 -114265054 - L1MC4a LINE L1 -859 5681 3899 22 56 0 0 chr12 29521424 29521460 -114264995 + AT_rich Low_complexity Low_complexity 1 36 0 382 280 159 35 chr12 29521592 29521881 -114264574 - L1MC4a LINE L1 -2865 3675 3351 545 324 24 19 chr12 29522029 29522242 -114264213 - MIR SINE MIR 0 262 49 380 347 163 18 chr12 29522369 29522989 -114263466 - L2 LINE L2 -865 2449 1740 262 250 26 35 chr12 29523020 29523136 -114263319 + CT-rich Low_complexity Low_complexity 2 116 0 571 231 238 16 chr12 29523370 29523568 -114262887 - MIR SINE MIR -41 221 1 2363 103 0 0 chr12 29523790 29524100 -114262355 + AluSg SINE Alu 1 310 0 221 265 24 24 chr12 29524875 29524958 -114261497 + L2 LINE L2 3205 3287 -26 1061 310 83 29 chr12 29527779 29528510 -114257945 + L2 LINE L2 2336 3174 -139 481 266 8 32 chr12 29528507 29528631 -114257824 + L2 LINE L2 2603 2723 -591 * 959 233 40 83 chr12 29528849 29529223 -114257232 + LTR37B LTR ERV1 16 373 -95 493 207 47 95 chr12 29529224 29529456 -114256999 + LTR37B LTR ERV1 244 464 -4 404 296 58 43 chr12 29529464 29529755 -114256700 + L2 LINE L2 2991 3272 0 3113 222 97 115 chr12 29530381 29531241 -114255214 - L1MC4a LINE L1 -5141 1399 440 395 258 83 8 chr12 29531241 29531373 -114255082 + LTR37B LTR ERV1 19 160 -308 3113 222 97 115 chr12 29531373 29531786 -114254669 - L1MC4a LINE L1 -6100 440 21 2380 120 34 14 chr12 29532333 29532690 -114253765 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr12 29533867 29533888 -114252567 + AT_rich Low_complexity Low_complexity 1 21 0 1936 143 7 3 chr12 29534865 29535158 -114251297 - AluSq SINE Alu -19 294 1 215 170 21 0 chr12 29536190 29536237 -114250218 + T-rich Low_complexity Low_complexity 1 48 0 225 0 0 0 chr12 29536250 29536275 -114250180 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr12 29537359 29537383 -114249072 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 29537726 29537752 -114248703 + AT_rich Low_complexity Low_complexity 1 26 0 1558 153 3 67 chr12 29537942 29538242 -114248213 + AluJo SINE Alu 10 290 -22 439 152 0 0 chr12 29539091 29539157 -114247298 - U4 snRNA snRNA -79 66 1 1568 151 0 16 chr12 29539175 29539427 -114247028 + MER2 DNA MER2_type 1 248 -97 810 202 30 39 chr12 29539424 29539627 -114246828 + MER2 DNA MER2_type 144 344 -1 * 468 303 136 17 chr12 29540839 29541126 -114245329 + L2 LINE L2 2992 3312 -1 1840 175 19 26 chr12 29541143 29541520 -114244935 + MLT1A2 LTR MaLR 1 374 0 202 260 10 29 chr12 29541566 29541670 -114244785 + (TA)n Simple_repeat Simple_repeat 1 102 0 465 261 92 24 chr12 29542431 29542659 -114243796 - L1ME LINE L1 -530 5591 5367 25 31 0 0 chr12 29542681 29542713 -114243742 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 29542856 29542885 -114243570 + AT_rich Low_complexity Low_complexity 1 29 0 227 263 81 0 chr12 29542929 29543028 -114243427 - L1ME LINE L1 -1088 5058 4952 290 386 21 0 chr12 29543408 29543553 -114242902 - L2 LINE L2 -235 3037 2890 205 359 100 36 chr12 29543643 29543924 -114242531 - L2 LINE L2 -560 2754 2456 333 351 199 19 chr12 29544140 29544351 -114242104 + L2 LINE L2 2554 2802 -512 * 511 242 45 15 chr12 29544350 29544482 -114241973 + MIR SINE MIR 117 252 -10 25 0 0 0 chr12 29544602 29544627 -114241828 + AT_rich Low_complexity Low_complexity 1 25 0 610 294 155 57 chr12 29545036 29545474 -114240981 - L2 LINE L2 0 3313 2833 23 0 0 0 chr12 29545562 29545585 -114240870 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr12 29546048 29546072 -114240383 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 2253 16 0 0 chr12 29546097 29546354 -114240101 - L1PA3 LINE L1 -4 6151 5895 376 241 43 46 chr12 29546707 29546815 -114239640 - MER41E LTR ERV1 -205 430 323 2811 162 40 58 chr12 29546815 29547438 -114239017 + LTR9 LTR ERV1 1 612 0 376 241 43 46 chr12 29547438 29547573 -114238882 - MER41E LTR ERV1 -312 323 54 26 0 0 0 chr12 29549152 29549178 -114237277 + AT_rich Low_complexity Low_complexity 1 26 0 7074 52 9 0 chr12 29549315 29550376 -114236079 - L1PA6 LINE L1 -5 6149 5085 180 313 0 30 chr12 29552049 29552116 -114234339 + L3 LINE CR1 1095 1159 -418 1786 218 25 17 chr12 29552402 29552806 -114233649 + MER82 DNA MER2_type 130 536 -117 2285 106 0 0 chr12 29552807 29553109 -114233346 + AluY SINE Alu 1 302 -9 568 277 8 0 chr12 29553127 29553257 -114233198 + MER82 DNA MER2_type 522 652 -1 339 85 0 0 chr12 29553734 29553781 -114232674 + (TG)n Simple_repeat Simple_repeat 2 48 0 250 216 27 0 chr12 29554677 29554777 -114231678 + (TA)n Simple_repeat Simple_repeat 1 102 0 522 127 64 3 chr12 29554793 29555125 -114231330 + (TA)n Simple_repeat Simple_repeat 1 352 0 1365 203 41 0 chr12 29555125 29555396 -114231059 - AluJb SINE Alu -27 285 4 24 32 0 0 chr12 29555404 29555435 -114231020 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 29555634 29555655 -114230800 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr12 29556537 29556593 -114229862 + AT_rich Low_complexity Low_complexity 1 56 0 598 285 116 11 chr12 29557651 29557918 -114228537 - L2 LINE L2 -6 3307 3013 791 40 0 0 chr12 29558012 29558111 -114228344 - L1PA5 LINE L1 0 6154 6056 1564 264 152 39 chr12 29558133 29558522 -114227933 - L2 LINE L2 -354 2960 2616 2362 112 0 0 chr12 29558522 29558834 -114227621 - AluSx SINE Alu 0 312 1 1564 264 152 39 chr12 29558834 29559163 -114227292 - L2 LINE L2 -698 2616 2161 910 190 87 10 chr12 29559251 29559446 -114227009 - MER2 DNA MER2_type -134 211 2 518 275 107 0 chr12 29559482 29559631 -114226824 + MIR SINE MIR 25 189 -73 221 231 15 15 chr12 29559641 29559706 -114226749 + (TA)n Simple_repeat Simple_repeat 1 65 0 1952 199 83 7 chr12 29559710 29560167 -114226288 - Charlie1b DNA MER1_type 0 523 32 849 264 29 64 chr12 29560196 29560276 -114226179 - MLT1D LTR MaLR -205 300 219 3989 155 17 61 chr12 29560276 29561097 -114225358 - LTR1 LTR ERV1 0 785 1 849 264 29 64 chr12 29561097 29561327 -114225128 - MLT1D LTR MaLR -286 219 1 1304 251 202 26 chr12 29561408 29561596 -114224859 - L2 LINE L2 -1175 2139 1986 1083 245 88 57 chr12 29561596 29562086 -114224369 + MLT1D LTR MaLR 1 505 0 1304 251 202 26 chr12 29562086 29562599 -114223856 - L2 LINE L2 -1328 1986 1314 235 164 15 15 chr12 29562861 29562928 -114223527 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 406 229 178 0 chr12 29564313 29564431 -114222024 - MIR SINE MIR -6 256 118 21 57 0 0 chr12 29564714 29564749 -114221706 + AT_rich Low_complexity Low_complexity 1 35 0 198 224 0 0 chr12 29564926 29564975 -114221480 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 357 240 78 69 chr12 29565269 29565486 -114220969 - HAL1 LINE L1 -4 2503 2285 522 295 0 0 chr12 29565511 29565660 -114220795 - HAL1 LINE L1 -302 2205 2057 2317 209 64 13 chr12 29566270 29566740 -114219715 - MER21B LTR ERV1 -364 499 6 6316 166 23 16 chr12 29566745 29568260 -114218195 - MER21B-int LTR ERV1 0 4191 2608 1796 296 93 27 chr12 29568358 29568407 -114218048 - HAL1 LINE L1 -1333 1174 1130 1891 169 0 0 chr12 29568407 29568714 -114217741 - AluJb SINE Alu -4 308 2 1796 296 93 27 chr12 29568714 29569134 -114217321 - HAL1 LINE L1 -1377 1130 739 701 265 41 0 chr12 29569134 29569304 -114217151 + MER45A DNA AcHobo 1 177 -1 1796 296 93 27 chr12 29569304 29569842 -114216613 - HAL1 LINE L1 -1768 739 86 210 71 0 0 chr12 29569842 29569870 -114216585 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1796 296 93 27 chr12 29569870 29569951 -114216504 - HAL1 LINE L1 -2421 86 12 1211 226 81 42 chr12 29570268 29570701 -114215754 - MLT1C LTR MaLR -10 457 8 1434 201 71 86 chr12 29570717 29571125 -114215330 - MLT1C-int LTR MaLR -9 1362 961 567 261 30 0 chr12 29571514 29571648 -114214807 - MLT1C-int LTR MaLR -511 860 723 3972 161 34 7 chr12 29571649 29572352 -114214103 - Tigger1 DNA MER2_type 0 2418 1697 7142 153 43 7 chr12 29572377 29573552 -114212903 - Tigger1 DNA MER2_type -1124 1294 70 1229 110 6 0 chr12 29573552 29573734 -114212721 + L1PA13 LINE L1 5962 6144 -19 7142 153 43 7 chr12 29573734 29573797 -114212658 - Tigger1 DNA MER2_type -2348 70 11 892 267 75 48 chr12 29573806 29574222 -114212233 - MLT1C LTR MaLR -40 427 1 328 322 21 14 chr12 29574669 29574812 -114211643 + CT-rich Low_complexity Low_complexity 2 145 0 393 348 0 0 chr12 29577392 29577510 -114208945 + MIR3 SINE MIR 86 203 -5 270 211 0 18 chr12 29577808 29577865 -114208590 - MIR3 SINE MIR -28 180 125 22 0 0 0 chr12 29577872 29577894 -114208561 + AT_rich Low_complexity Low_complexity 1 22 0 424 265 142 33 chr12 29578336 29578547 -114207908 - L2 LINE L2 -142 3171 2938 2353 78 0 0 chr12 29578588 29578883 -114207572 - AluSg SINE Alu -15 295 1 291 283 50 0 chr12 29579200 29579299 -114207156 + MER103 DNA DNA 11 114 -52 781 297 81 31 chr12 29579391 29579809 -114206646 + Charlie7 DNA MER1_type 7 445 -2167 356 293 42 30 chr12 29580079 29580246 -114206209 - MLT1J1 LTR MaLR -115 331 163 808 283 40 65 chr12 29580253 29580758 -114205697 - L1M4 LINE L1 -2316 4641 4150 26 0 0 0 chr12 29580847 29580873 -114205582 + AT_rich Low_complexity Low_complexity 1 26 0 2070 37 0 0 chr12 29580873 29581119 -114205336 - L1PA3 LINE L1 -3 6152 5907 350 283 84 47 chr12 29581189 29581380 -114205075 - L1MEd LINE L1 -5018 1101 904 203 170 38 94 chr12 29581744 29581797 -114204658 - MER5A DNA MER1_type 0 189 140 31 0 0 0 chr12 29582660 29582691 -114203764 + AT_rich Low_complexity Low_complexity 1 31 0 234 287 96 7 chr12 29582973 29583109 -114203346 - L1MC/D LINE L1 -1899 5909 5762 24 0 0 0 chr12 29583145 29583169 -114203286 + AT_rich Low_complexity Low_complexity 1 24 0 2446 62 20 0 chr12 29583291 29583595 -114202860 + AluY SINE Alu 1 310 -1 2231 113 0 7 chr12 29583793 29584103 -114202352 + AluSx SINE Alu 1 308 -4 233 281 124 0 chr12 29585290 29585379 -114201076 - L2 LINE L2 0 3313 3214 4741 256 100 47 chr12 29585779 29587385 -114199070 + L1MDa LINE L1 17 1729 -4811 1660 225 24 34 chr12 29587385 29587803 -114198652 + MLT2D LTR ERVL 1 414 0 4741 256 100 47 chr12 29587803 29587980 -114198475 + L1MDa LINE L1 1729 1895 -4645 1494 227 58 45 chr12 29587986 29588362 -114198093 - L1M4 LINE L1 -3327 3630 3261 1287 156 168 34 chr12 29588362 29588509 -114197946 - THE1C LTR MaLR -4 371 245 303 28 0 0 chr12 29588509 29588545 -114197910 + (GA)n Simple_repeat Simple_repeat 1 36 0 1287 156 168 34 chr12 29588545 29588724 -114197731 - THE1C LTR MaLR -130 245 1 8898 147 11 35 chr12 29588724 29590340 -114196115 - THE1C-int LTR MaLR 0 1580 3 1897 154 46 30 chr12 29590342 29590711 -114195744 - THE1C LTR MaLR 0 375 1 1494 227 58 45 chr12 29590711 29590843 -114195612 - L1M4 LINE L1 -3696 3261 3107 1972 165 18 6 chr12 29590843 29591176 -114195279 + MER1B DNA MER1_type 1 337 0 1494 227 58 45 chr12 29591176 29591243 -114195212 - L1M4 LINE L1 -3850 3107 3042 451 319 43 0 chr12 29591396 29591537 -114194918 - MER8 DNA MER2_type -87 152 6 242 239 43 22 chr12 29591542 29591634 -114194821 - L1M4 LINE L1 -4572 2387 2294 * 5029 182 24 15 chr12 29591630 29592721 -114193734 - L1 LINE L1 -1096 5050 3950 994 272 80 21 chr12 29592764 29593333 -114193122 - L1M4 LINE L1 -4726 2233 1637 347 215 43 92 chr12 29593307 29593398 -114193057 - L1M4 LINE L1 -6694 165 84 * 2050 145 16 21 chr12 29593398 29593771 -114192684 + THE1C LTR MaLR 5 375 0 347 215 43 92 chr12 29593771 29593842 -114192613 - L1M4 LINE L1 -6775 84 11 361 269 107 37 chr12 29594726 29594968 -114191487 + MIR SINE MIR 3 261 -1 21 0 0 0 chr12 29596708 29596729 -114189726 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 29597213 29597236 -114189219 + AT_rich Low_complexity Low_complexity 1 23 0 6826 54 5 29 chr12 29598752 29599879 -114186576 + L1PA6 LINE L1 5048 6153 -1 48 0 0 0 chr12 29601820 29601868 -114184587 + AT_rich Low_complexity Low_complexity 1 48 0 181 274 274 0 chr12 29604074 29604136 -114182319 + L2 LINE L2 3235 3313 0 338 290 53 15 chr12 29604899 29605030 -114181425 - L2 LINE L2 -1 3312 3177 2144 110 0 3 chr12 29605903 29606202 -114180253 - AluSg SINE Alu -12 298 1 5927 92 14 2 chr12 29606928 29607780 -114178675 - L1PB1 LINE L1 -1 6150 5289 2169 207 15 0 chr12 29607781 29608259 -114178196 + L1M4 LINE L1 4124 4608 -1538 1574 238 36 7 chr12 29608258 29608670 -114177785 + L1P LINE L1 4855 5278 -868 * 21 0 0 0 chr12 29609111 29609132 -114177323 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 29609352 29609380 -114177075 + AT_rich Low_complexity Low_complexity 1 28 0 338 247 0 0 chr12 29609448 29609533 -114176922 + L1M4 LINE L1 5048 5132 -1014 944 149 72 16 chr12 29609536 29609730 -114176725 + THE1C LTR MaLR 1 205 -170 189 0 0 0 chr12 29610231 29610252 -114176203 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr12 29610507 29610536 -114175919 + AT_rich Low_complexity Low_complexity 1 29 0 264 122 0 0 chr12 29611604 29611645 -114174810 + (T)n Simple_repeat Simple_repeat 1 41 0 887 328 70 14 chr12 29613002 29613347 -114173108 - MLT1I LTR MaLR -45 364 1 22 56 0 0 chr12 29614050 29614086 -114172369 + AT_rich Low_complexity Low_complexity 1 36 0 738 268 106 0 chr12 29614552 29614787 -114171668 + L1 LINE L1 4274 4533 -1613 2269 80 13 0 chr12 29614884 29615183 -114171272 + AluY SINE Alu 9 311 0 203 286 0 0 chr12 29615345 29615394 -114171061 - MIR3 SINE MIR -17 191 143 195 129 0 0 chr12 29615403 29615434 -114171021 + (TC)n Simple_repeat Simple_repeat 1 31 0 637 289 90 14 chr12 29615457 29615668 -114170787 + MIR SINE MIR 5 231 -31 215 347 0 0 chr12 29615724 29615773 -114170682 - MIR SINE MIR -129 79 31 1362 238 52 48 chr12 29615911 29616311 -114170144 - MER21B LTR ERV1 -58 805 404 526 199 247 32 chr12 29616317 29616547 -114169908 + MER21B LTR ERV1 42 358 -505 558 298 128 90 chr12 29617010 29617336 -114169119 - L2 LINE L2 -528 2786 2474 414 69 0 0 chr12 29617336 29617394 -114169061 + (TG)n Simple_repeat Simple_repeat 1 58 0 558 298 128 90 chr12 29617394 29618116 -114168339 - L2 LINE L2 -840 2474 1698 189 216 176 0 chr12 29618672 29618723 -114167732 + L2 LINE L2 3191 3250 -63 225 158 0 0 chr12 29618818 29618856 -114167599 - MER3 DNA MER1_type -160 49 12 1864 259 71 17 chr12 29618858 29619700 -114166755 - L1ME1 LINE L1 -152 6294 5413 606 124 52 0 chr12 29619704 29619801 -114166654 - THE1C LTR MaLR -2 373 272 2374 93 84 0 chr12 29619803 29620147 -114166308 - THE1C LTR MaLR -2 373 1 10095 100 22 67 chr12 29620152 29621032 -114165423 - THE1C-int LTR MaLR -6 1574 801 207 0 0 0 chr12 29621032 29621055 -114165400 + (CCCCCA)n Simple_repeat Simple_repeat 4 26 0 10095 100 22 67 chr12 29621055 29621822 -114164633 - THE1C-int LTR MaLR -779 801 1 2541 99 14 3 chr12 29621823 29622178 -114164277 - THE1C LTR MaLR -1 374 16 1292 134 111 20 chr12 29622185 29622438 -114164017 - THE1C LTR MaLR -99 276 1 541 243 120 60 chr12 29622441 29622758 -114163697 - L1ME1 LINE L1 -1014 5412 5077 692 242 42 0 chr12 29622758 29622923 -114163532 - MER20 DNA MER1_type -1 218 47 7120 230 52 26 chr12 29622923 29623990 -114162465 - L1ME1 LINE L1 -1589 4837 3799 1478 190 32 69 chr12 29623990 29624369 -114162086 - MLT1A1 LTR MaLR 0 365 1 7120 230 52 26 chr12 29624369 29626238 -114160217 - L1ME1 LINE L1 -2627 3799 1823 1036 60 40 20 chr12 29626777 29626927 -114159528 - L1PA11 LINE L1 -3 6171 6019 242 161 49 111 chr12 29626934 29627015 -114159440 - L1ME1 LINE L1 -4596 1830 1755 * 332 241 0 35 chr12 29627012 29627099 -114159356 - L1ME LINE L1 -473 5762 5679 2846 215 44 83 chr12 29627133 29627588 -114158867 - L1ME LINE L1 -795 5420 4948 2226 157 44 7 chr12 29627588 29628001 -114158454 + MSTA LTR MaLR 1 428 0 2846 215 44 83 chr12 29628001 29628623 -114157832 - L1ME LINE L1 -1267 4948 4386 213 94 0 0 chr12 29628627 29628659 -114157796 + (TA)n Simple_repeat Simple_repeat 2 33 0 3894 65 0 2 chr12 29628660 29629327 -114157128 - L1PA8 LINE L1 0 6172 5312 2157 129 0 0 chr12 29629327 29629636 -114156819 - AluSx SINE Alu -3 309 1 854 229 101 35 chr12 29629636 29630003 -114156452 - L1ME LINE L1 -1836 4379 3989 2437 247 52 39 chr12 29630046 29631197 -114155258 - L1MEc LINE L1 -2786 3429 2275 2080 117 0 0 chr12 29631197 29631515 -114154940 - AluSx SINE Alu 0 318 1 2437 247 52 39 chr12 29631515 29631737 -114154718 - L1MEc LINE L1 -3940 2275 2057 717 228 0 20 chr12 29632325 29632474 -114153981 + Tigger3(Golem) DNA MER2_type 2 147 -2882 * 794 90 83 14 chr12 29632446 29632591 -114153864 + Tigger3(Golem) DNA MER2_type 2041 2195 -834 * 802 138 0 0 chr12 29632587 29632710 -114153745 - MSTB2 LTR MaLR -316 141 19 1586 157 0 0 chr12 29632715 29632957 -114153498 + Tigger3(Golem) DNA MER2_type 2788 3029 0 883 116 116 7 chr12 29633020 29633167 -114153288 + MER34B LTR ERV1 1 163 -402 642 130 0 0 chr12 29633184 29633284 -114153171 - LTR12 LTR ERV1 0 714 615 282 263 34 17 chr12 29633286 29633404 -114153051 - LTR30 LTR ERV1 -79 643 524 320 85 0 0 chr12 29633491 29633538 -114152917 - LTR12 LTR ERV1 -480 234 188 242 219 137 0 chr12 29633538 29633611 -114152844 - LTR30 LTR ERV1 -639 83 1 * 2343 166 34 7 chr12 29633611 29634011 -114152444 + MER34B LTR ERV1 155 565 0 263 186 29 14 chr12 29634764 29634834 -114151621 + MLT1J1 LTR MaLR 362 432 -14 22 35 0 0 chr12 29635180 29635209 -114151246 + AT_rich Low_complexity Low_complexity 1 29 0 2348 72 14 0 chr12 29635921 29636213 -114150242 - AluSp SINE Alu -17 296 1 225 0 0 0 chr12 29636358 29636383 -114150072 + (TG)n Simple_repeat Simple_repeat 2 26 0 1597 176 103 39 chr12 29637068 29637506 -114148949 - MER31B LTR ERV1 0 466 1 25 0 0 0 chr12 29637879 29637904 -114148551 + AT_rich Low_complexity Low_complexity 1 25 0 2135 232 43 76 chr12 29637937 29638237 -114148218 - L1ME1 LINE L1 -1 6165 5857 1110 166 16 43 chr12 29638237 29638314 -114148141 - L1MA9 LINE L1 0 6312 6234 189 0 0 0 chr12 29638314 29638335 -114148120 + (TA)n Simple_repeat Simple_repeat 2 22 0 1110 166 16 43 chr12 29638335 29638510 -114147945 - L1MA9 LINE L1 -78 6234 6067 2135 232 43 76 chr12 29638510 29638946 -114147509 - L1ME1 LINE L1 -309 5857 5453 1615 213 3 0 chr12 29640447 29640748 -114145707 - AluJb SINE Alu -10 302 1 189 274 137 41 chr12 29641170 29641243 -114145212 - L2 LINE L2 -29 3243 3164 321 347 27 7 chr12 29641597 29641744 -114144711 - L1MC/D LINE L1 -2047 6179 6030 2425 117 4 80 chr12 29641901 29642362 -114144093 - L1PA15 LINE L1 -9 6156 5731 698 184 0 151 chr12 29642362 29642590 -114143865 + MLT2C1 LTR ERVL 205 397 0 265 60 0 40 chr12 29643629 29643679 -114142776 + (TTG)n Simple_repeat Simple_repeat 2 49 0 586 316 208 36 chr12 29644046 29644632 -114141823 + L3 LINE CR1 457 1143 -434 1189 195 4 13 chr12 29644695 29644921 -114141534 - AluJo SINE Alu -88 224 1 296 309 119 10 chr12 29645031 29645225 -114141230 - L1MC/D LINE L1 -531 6049 5835 24 0 0 0 chr12 29645336 29645360 -114141095 + AT_rich Low_complexity Low_complexity 1 24 0 300 246 45 77 chr12 29645441 29645661 -114140794 - L1MC/D LINE L1 -989 5575 5363 2455 237 19 36 chr12 29645705 29646402 -114140053 + MER76 LTR ERV 1 685 -3 914 188 16 36 chr12 29646414 29646606 -114139849 + MER5A DNA MER1_type 1 188 -1 227 278 111 0 chr12 29646662 29646752 -114139703 - L1MC/D LINE L1 -1294 5270 5171 3375 210 80 164 chr12 29646795 29648525 -114137930 - L1MCb LINE L1 -4819 1745 1 2245 93 10 13 chr12 29648980 29649293 -114137162 + AluSp SINE Alu 1 312 -1 22 35 0 0 chr12 29650180 29650209 -114136246 + AT_rich Low_complexity Low_complexity 1 29 0 389 272 38 32 chr12 29650424 29650582 -114135873 - L1ME1 LINE L1 -8 6158 6000 732 290 138 28 chr12 29651697 29652311 -114134144 - L1M4 LINE L1 -3261 2885 2204 * 7994 226 67 26 chr12 29652309 29652776 -114133679 - L1MC1 LINE L1 -37 6576 6130 641 69 11 0 chr12 29652776 29652863 -114133592 - L1PA10 LINE L1 -5 6163 6076 7994 226 67 26 chr12 29652863 29652946 -114133509 - L1MC1 LINE L1 -483 6130 6052 1626 150 64 64 chr12 29652946 29653320 -114133135 + THE1C LTR MaLR 1 374 -1 7994 226 67 26 chr12 29653320 29657465 -114128990 - L1MC1 LINE L1 -561 6052 1680 442 98 0 0 chr12 29657645 29657706 -114128749 - Alu SINE Alu -20 292 232 28 29 0 0 chr12 29657782 29657817 -114128638 + AT_rich Low_complexity Low_complexity 1 35 0 533 313 139 20 chr12 29658180 29658682 -114127773 - Tigger8 DNA MER2_type -100 566 5 1147 206 25 108 chr12 29658841 29659239 -114127216 + MLT1A1 LTR MaLR 1 365 0 451 186 12 12 chr12 29659325 29659411 -114127044 + Tigger5 DNA MER2_type 3 88 -2235 477 188 0 0 chr12 29659445 29659525 -114126930 + Tigger5 DNA MER2_type 2244 2323 0 270 81 0 0 chr12 29660401 29660438 -114126017 + (T)n Simple_repeat Simple_repeat 1 37 0 1697 195 114 51 chr12 29661127 29661466 -114124989 + L1ME2 LINE L1 4985 5301 -863 2379 93 3 0 chr12 29661466 29661776 -114124679 + AluSx SINE Alu 1 311 -1 1697 195 114 51 chr12 29661776 29662281 -114124174 + L1ME2 LINE L1 5301 5887 -277 270 280 0 28 chr12 29662264 29662371 -114124084 - L1MC4 LINE L1 -1325 6717 6614 * 258 137 0 59 chr12 29662374 29662476 -114123979 + (TA)n Simple_repeat Simple_repeat 2 97 0 397 284 0 21 chr12 29662662 29662803 -114123652 + L1MC5 LINE L1 7769 7906 -55 189 0 0 0 chr12 29663532 29663553 -114122902 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 650 215 207 15 chr12 29664412 29664673 -114121782 - MER5C DNA MER1_type 0 324 14 2343 120 6 0 chr12 29665176 29665533 -114120922 + L1PA14 LINE L1 5794 6152 -9 329 335 101 10 chr12 29666108 29666317 -114120138 + HAL1 LINE L1 162 389 -2118 840 215 169 33 chr12 29666324 29666626 -114119829 - MLT1A1 LTR MaLR 0 365 23 430 340 81 12 chr12 29666704 29666951 -114119504 + HAL1 LINE L1 460 723 -1784 1182 171 0 10 chr12 29667254 29667459 -114118996 - AluJb SINE Alu -109 203 1 312 318 84 9 chr12 29667720 29667934 -114118521 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29668006 29668035 -114118420 + AT_rich Low_complexity Low_complexity 1 29 0 616 148 10 0 chr12 29668264 29668365 -114118090 + AluJ/FLAM SINE Alu 1 102 -210 216 86 0 0 chr12 29668404 29668439 -114118016 + (CAGGG)n Simple_repeat Simple_repeat 3 37 0 1357 285 50 10 chr12 29670207 29670688 -114115767 - MLT1J LTR MaLR -1 510 11 3225 195 86 1 chr12 29671582 29672258 -114114197 + MER44D DNA MER2_type 1 605 0 620 238 17 52 chr12 29673237 29673409 -114113046 + MIR3 SINE MIR 13 178 -30 942 186 47 33 chr12 29673443 29673658 -114112797 + MER20 DNA MER1_type 1 218 -1 477 263 44 31 chr12 29673702 29673862 -114112593 - Charlie8 DNA MER1_type -2248 169 8 394 301 147 12 chr12 29674160 29674323 -114112132 - MIR3 SINE MIR -3 205 21 2734 78 17 0 chr12 29676396 29676754 -114109701 + THE1B LTR MaLR 1 364 0 1664 154 103 0 chr12 29677060 29677332 -114109123 - AluJo SINE Alu -2 310 11 1063 156 0 31 chr12 29677994 29678186 -114108269 - L1PA13 LINE L1 -12 6151 5966 * 6057 126 6 0 chr12 29678184 29679581 -114106874 + L1PA8 LINE L1 4800 6172 0 2729 215 44 84 chr12 29679616 29680238 -114106217 + L1ME3A LINE L1 4317 4878 -1268 2247 157 44 7 chr12 29680238 29680651 -114105804 - MSTA LTR MaLR 0 428 1 2729 215 44 84 chr12 29680651 29681107 -114105348 + L1ME3A LINE L1 4878 5351 -795 250 273 0 0 chr12 29681163 29681229 -114105226 + L1ME3A LINE L1 5628 5693 -473 1044 60 40 20 chr12 29681314 29681464 -114104991 + L1PA11 LINE L1 6019 6171 -3 2265 227 74 21 chr12 29682003 29683425 -114103030 + L1MCa LINE L1 1823 3323 -3103 374 284 45 26 chr12 29683902 29684057 -114102398 + L1ME3A LINE L1 6000 6157 -13 22 35 0 0 chr12 29684272 29684301 -114102154 + AT_rich Low_complexity Low_complexity 1 29 0 2209 113 7 0 chr12 29685193 29685502 -114100953 - AluSp SINE Alu -2 311 1 726 300 88 18 chr12 29685505 29685788 -114100667 + MLT1H LTR MaLR 177 479 -70 7789 201 75 28 chr12 29685789 29687830 -114098625 - Cheshire DNA MER1_type 0 2420 285 516 228 106 0 chr12 29687830 29687953 -114098502 - Cheshire DNA MER1_type -2282 138 3 245 201 46 0 chr12 29687953 29688021 -114098434 + MLT1H LTR MaLR 492 587 -8 311 280 82 39 chr12 29688030 29688212 -114098243 + HAL1 LINE L1 2156 2345 -162 1277 44 0 0 chr12 29688237 29688397 -114098058 + L1P LINE L1 2752 2911 -3235 2422 96 0 0 chr12 29690657 29690969 -114095486 - AluSx SINE Alu 0 312 1 1033 192 116 27 chr12 29691014 29691306 -114095149 - L1M4 LINE L1 -844 5302 4985 317 133 17 0 chr12 29691941 29692001 -114094454 + L1PB1 LINE L1 6060 6120 -31 493 126 0 0 chr12 29692001 29692084 -114094371 + L1PB1 LINE L1 6065 6151 0 1198 229 76 17 chr12 29692724 29693026 -114093429 + MSTD LTR MaLR 1 320 -76 1808 195 0 3 chr12 29693042 29693350 -114093105 - AluJb SINE Alu -5 307 1 289 318 84 9 chr12 29693611 29693825 -114092630 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29693897 29693926 -114092529 + AT_rich Low_complexity Low_complexity 1 29 0 393 149 15 0 chr12 29694157 29694224 -114092231 + AluJ/FLAM SINE Alu 1 68 -234 189 0 0 0 chr12 29695144 29695165 -114091290 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 383 284 0 21 chr12 29695894 29696035 -114090420 - L1MC5 LINE L1 -55 7906 7769 226 350 14 7 chr12 29696038 29696181 -114090274 - L1ME3A LINE L1 -7 6163 6020 258 137 0 59 chr12 29696221 29696323 -114090132 + (TA)n Simple_repeat Simple_repeat 2 97 0 260 280 0 28 chr12 29696326 29696433 -114090022 + L1MC4 LINE L1 6614 6717 -1325 * 678 206 22 43 chr12 29696416 29696452 -114090003 - L1ME3A LINE L1 -275 5887 5852 378 263 100 25 chr12 29696452 29696677 -114089778 - L1MA3 LINE L1 -450 5855 5614 22 0 0 0 chr12 29697098 29697120 -114089335 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 29697120 29697143 -114089312 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 29697470 29697491 -114088964 + GC_rich Low_complexity Low_complexity 1 21 0 219 133 0 0 chr12 29697504 29697549 -114088906 + (G)n Simple_repeat Simple_repeat 1 45 0 273 306 0 27 chr12 29699061 29699172 -114087283 - MIR3 SINE MIR -3 205 98 609 154 41 24 chr12 29699491 29699614 -114086841 + MSTD LTR MaLR 272 396 0 8668 111 10 11 chr12 29699895 29701292 -114085163 + L1P LINE L1 2678 4073 -2073 826 93 0 110 chr12 29701475 29701721 -114084734 - AluSg/x SINE Alu 0 310 92 327 345 104 48 chr12 29702085 29702441 -114084014 + L2 LINE L2 2809 3184 -88 2554 61 3 3 chr12 29702643 29702973 -114083482 + L1PA6 LINE L1 5824 6153 -1 297 267 0 0 chr12 29703850 29703955 -114082500 + C-rich Low_complexity Low_complexity 1 105 0 542 253 34 7 chr12 29704405 29704551 -114081904 - L2 LINE L2 -6 3307 3158 2574 176 56 7 chr12 29704555 29705347 -114081108 + L1MB7 LINE L1 5021 5858 -326 3449 129 13 2 chr12 29705456 29706006 -114080449 + L1MA2 LINE L1 5452 6007 -297 318 209 23 12 chr12 29707248 29707334 -114079121 + L1MA9 LINE L1 6078 6164 -148 301 317 137 5 chr12 29707345 29707550 -114078905 + L1MDa LINE L1 1707 1938 -4602 356 159 0 0 chr12 29707951 29708014 -114078441 + MADE1 DNA Mariner 6 68 -12 198 103 0 0 chr12 29708168 29708197 -114078258 + (T)n Simple_repeat Simple_repeat 1 29 0 7372 36 1 0 chr12 29708220 29709691 -114076764 - L1PA4 LINE L1 -3 6152 4687 203 177 13 63 chr12 29710293 29710372 -114076083 + (CGGGG)n Simple_repeat Simple_repeat 5 79 0 23 0 0 0 chr12 29710385 29710408 -114076047 + GC_rich Low_complexity Low_complexity 1 23 0 1069 326 98 26 chr12 29710488 29711291 -114075164 - HERV16 LTR ERVL -2413 3241 2381 357 382 26 18 chr12 29711295 29711523 -114074932 - HERV16 LTR ERVL -3540 2114 1885 490 242 74 42 chr12 29712420 29712610 -114073845 - LTR67 LTR ERVL -2 555 360 315 299 161 11 chr12 29712736 29712910 -114073545 - LTR67 LTR ERVL -356 201 2 321 284 10 29 chr12 29713224 29713326 -114073129 + L1MC4 LINE L1 6604 6703 -1339 229 208 104 52 chr12 29714811 29714888 -114071567 - MLT1I LTR MaLR -272 137 57 387 228 30 40 chr12 29715130 29715231 -114071224 - L2 LINE L2 0 3313 3214 * 554 252 14 48 chr12 29715228 29715375 -114071080 + L2 LINE L2 3172 3313 0 7048 48 6 0 chr12 29715739 29716836 -114069619 - L1PA7 LINE L1 -8 6146 5036 8431 33 1 0 chr12 29717515 29718534 -114067921 - L1PA3 LINE L1 -1928 4218 3199 9888 25 2 1 chr12 29718534 29720468 -114065987 + L1PA3 LINE L1 4218 6152 -3 503 237 106 66 chr12 29720862 29721060 -114065395 + L2 LINE L2 2465 2670 -644 764 22 0 0 chr12 29721766 29721856 -114064599 + 5S rRNA rRNA 1 90 -31 280 205 24 24 chr12 29722491 29722574 -114063881 - LTR67 LTR ERVL 0 557 475 703 283 35 15 chr12 29722943 29723141 -114063314 - MIR SINE MIR -4 258 57 667 198 23 35 chr12 29723659 29723831 -114062624 - MER20 DNA MER1_type -5 214 45 898 286 118 23 chr12 29724123 29724514 -114061941 - LTR16A LTR ERVL -6 444 17 1012 314 66 42 chr12 29724751 29725387 -114061068 - HERV16 LTR ERVL -503 5261 4611 797 262 77 4 chr12 29725413 29725661 -114060794 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29725938 29725980 -114060475 + AT_rich Low_complexity Low_complexity 1 42 0 1611 242 107 31 chr12 29726575 29726610 -114059845 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29726610 29726631 -114059824 + (TG)n Simple_repeat Simple_repeat 2 22 0 1611 242 107 31 chr12 29726631 29727071 -114059384 - MLT2B1 LTR ERVL -39 481 1 411 266 120 62 chr12 29727241 29727500 -114058955 + L2 LINE L2 2337 2610 -704 501 279 114 49 chr12 29727505 29727996 -114058459 + L2 LINE L2 2521 3311 -2 1082 220 14 9 chr12 29728860 29729083 -114057372 + MER58A DNA MER1_type 1 224 0 243 164 0 115 chr12 29729654 29729715 -114056740 + MIR SINE MIR 199 252 -10 1166 156 71 18 chr12 29729747 29729971 -114056484 + MER46A DNA MER2_type 1 236 0 4335 139 12 23 chr12 29730073 29731214 -114055241 - L1PA14 LINE L1 -243 5918 4800 1219 124 6 5 chr12 29731212 29731412 -114055043 + L1PA13 LINE L1 5966 6166 -8 * 528 245 7 35 chr12 29732164 29732307 -114054148 - L1ME3A LINE L1 -63 6107 5969 1543 191 55 60 chr12 29732617 29732695 -114053760 - MSTD LTR MaLR 0 396 319 1822 187 7 3 chr12 29732695 29733000 -114053455 + AluJo SINE Alu 1 306 -6 1543 191 55 60 chr12 29733000 29733319 -114053136 - MSTD LTR MaLR -77 319 1 493 126 0 0 chr12 29733959 29734046 -114052409 - L1PB1 LINE L1 0 6151 6065 5595 171 63 24 chr12 29734047 29735667 -114050788 - L1PB1 LINE L1 -36 6831 5092 243 0 0 0 chr12 29735667 29735694 -114050761 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5595 171 63 24 chr12 29735694 29735934 -114050521 - L1PB1 LINE L1 -1775 5092 4863 28506 49 1 1 chr12 29735944 29740319 -114046136 - L1PA5 LINE L1 -2 6152 1777 1323 71 0 0 chr12 29740319 29740488 -114045967 + L1PA5 LINE L1 1634 1802 -4344 * 13532 174 81 8 chr12 29740484 29745024 -114041431 - L1PB1 LINE L1 -1985 4877 6 305 147 162 0 chr12 29745107 29745175 -114041280 - AluJ/FRAM SINE Alu 0 302 224 411 222 94 0 chr12 29745198 29745315 -114041140 + L1MC4a LINE L1 5721 5848 -1960 186 133 0 0 chr12 29745373 29745403 -114041052 + (TA)n Simple_repeat Simple_repeat 1 30 0 1312 260 118 42 chr12 29746391 29746944 -114039511 + MLT1G1 LTR MaLR 1 595 0 449 106 15 0 chr12 29747207 29747273 -114039182 + MSTD LTR MaLR 1 67 -329 553 151 53 22 chr12 29747298 29747448 -114039007 + MSTD LTR MaLR 208 396 0 927 302 69 58 chr12 29748115 29748595 -114037860 - L2 LINE L2 -8 3305 2821 272 264 22 0 chr12 29748600 29748691 -114037764 - L2 LINE L2 -1294 2020 1928 522 234 184 6 chr12 29748807 29749128 -114037327 + Charlie2 DNA MER1_type 2423 2800 -62 270 310 163 31 chr12 29750466 29750595 -114035860 + MIR SINE MIR 12 157 -105 21 0 0 0 chr12 29750685 29750706 -114035749 + AT_rich Low_complexity Low_complexity 1 21 0 2241 92 7 3 chr12 29752116 29752411 -114034044 + AluY SINE Alu 1 296 -15 772 300 22 9 chr12 29752899 29753129 -114033326 + MIR SINE MIR 5 237 -25 21 36 0 0 chr12 29753226 29753254 -114033201 + AT_rich Low_complexity Low_complexity 1 28 0 414 286 7 41 chr12 29754021 29754168 -114032287 - MLT1J LTR MaLR -94 417 276 200 188 0 0 chr12 29754999 29755031 -114031424 + L2 LINE L2 3214 3245 -27 1627 258 126 14 chr12 29755179 29755695 -114030760 + MER119 DNA MER1_type 7 580 -3 211 384 40 46 chr12 29755820 29755971 -114030484 - L2 LINE L2 -23 3249 3100 252 263 15 83 chr12 29756051 29756184 -114030271 - L2 LINE L2 -209 3063 2940 17731 173 55 16 chr12 29756990 29763785 -114022670 + L1M1 LINE L1 17 7081 -642 440 270 40 20 chr12 29764613 29764765 -114021690 + MIR SINE MIR 87 241 -21 2398 194 118 20 chr12 29767916 29768679 -114017776 + Charlie1 DNA MER1_type 1923 2760 -1 29 78 0 0 chr12 29769215 29769279 -114017176 + AT_rich Low_complexity Low_complexity 1 64 0 2288 267 74 41 chr12 29770571 29771452 -114015003 - L1M3d LINE L1 -4978 913 4 897 265 15 27 chr12 29772202 29772462 -114013993 - MIR SINE MIR 0 262 6 354 309 101 24 chr12 29772609 29772777 -114013678 - L2 LINE L2 -16 3297 3117 535 270 167 9 chr12 29772824 29773082 -114013373 + L1ME2 LINE L1 5862 6160 -10 592 282 102 4 chr12 29773140 29773385 -114013070 - L2 LINE L2 -887 2427 2159 1810 118 0 33 chr12 29774905 29775176 -114011279 - AluSg SINE Alu 0 310 49 327 345 104 48 chr12 29775455 29775811 -114010644 + L2 LINE L2 2809 3184 -88 243 275 47 107 chr12 29776174 29776323 -114010132 + L3 LINE CR1 987 1126 -451 396 349 62 17 chr12 29776600 29776841 -114009614 + MLT1K LTR MaLR 334 585 -3 241 317 117 0 chr12 29776874 29776994 -114009461 + MIR SINE MIR 49 182 -80 266 230 150 10 chr12 29777078 29777178 -114009277 + L3 LINE CR1 1149 1262 -315 243 210 92 59 chr12 29777184 29777303 -114009152 + L1MC4 LINE L1 6614 6736 -1306 1749 174 56 3 chr12 29777340 29777662 -114008793 - MER7A DNA MER2_type -9 337 1 198 188 0 0 chr12 29778263 29778295 -114008160 + L2 LINE L2 3214 3245 -27 521 74 12 25 chr12 29778562 29778643 -114007812 - L1P LINE L1 -4433 1713 1634 28298 55 0 2 chr12 29778643 29783029 -114003426 + L1PA5 LINE L1 1777 6154 0 369 158 248 40 chr12 29784668 29784769 -114001686 + MER20 DNA MER1_type 97 218 -1 687 259 81 0 chr12 29785387 29785572 -114000883 + MER46C DNA MER2_type 8 207 -131 322 307 89 39 chr12 29785861 29786118 -114000337 + L1ME4a LINE L1 5293 5562 -600 486 244 134 36 chr12 29786138 29786445 -114000010 + L1ME4a LINE L1 5607 5943 -178 38 0 0 0 chr12 29788234 29788272 -113998183 + AT_rich Low_complexity Low_complexity 1 38 0 210 210 49 12 chr12 29788290 29788371 -113998084 + (TA)n Simple_repeat Simple_repeat 2 85 0 2198 107 0 23 chr12 29788553 29788863 -113997592 - AluSx SINE Alu -9 303 1 2107 182 23 5 chr12 29789372 29789807 -113996648 - L1MB1 LINE L1 -1 6167 5725 401 194 231 22 chr12 29790241 29790375 -113996080 + MIR SINE MIR 97 258 -4 956 226 32 18 chr12 29792292 29792513 -113993942 + MER58A DNA MER1_type 1 224 0 283 306 0 27 chr12 29793295 29793406 -113993049 + MIR3 SINE MIR 98 205 -3 22 0 0 0 chr12 29795075 29795097 -113991358 + AT_rich Low_complexity Low_complexity 1 22 0 544 163 16 0 chr12 29795260 29795389 -113991066 + (TG)n Simple_repeat Simple_repeat 2 132 0 435 274 115 6 chr12 29796461 29796618 -113989837 - MIR SINE MIR -3 259 86 293 322 161 8 chr12 29798094 29798212 -113988243 + MIR SINE MIR 2 137 -125 1300 234 129 33 chr12 29798281 29798738 -113987717 + MLT1F1 LTR MaLR 67 567 0 21 0 0 0 chr12 29800351 29800372 -113986083 + AT_rich Low_complexity Low_complexity 1 21 0 1173 194 45 94 chr12 29800472 29800875 -113985580 - MLT1B LTR MaLR -7 383 1 1517 70 0 15 chr12 29800930 29801130 -113985325 - MER107 DNA MER1_type 0 197 1 1656 301 125 11 chr12 29801130 29801976 -113984479 + L2 LINE L2 2123 3066 -247 219 69 0 0 chr12 29802173 29802202 -113984253 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 29802489 29802510 -113983945 + AT_rich Low_complexity Low_complexity 1 21 0 355 349 0 0 chr12 29803951 29804077 -113982378 + L1ME LINE L1 4733 4858 -1288 295 267 22 83 chr12 29804132 29804312 -113982143 + L1ME LINE L1 5652 5749 -372 306 242 121 43 chr12 29804321 29804559 -113981896 + L1ME LINE L1 5510 5595 -526 509 252 8 16 chr12 29804998 29805121 -113981334 - L2 LINE L2 0 3313 3192 2027 146 0 3 chr12 29805841 29806136 -113980319 - AluSx SINE Alu -18 294 1 38 39 0 0 chr12 29807750 29807802 -113978653 + AT_rich Low_complexity Low_complexity 1 52 0 251 336 130 8 chr12 29807934 29808066 -113978389 + MIR SINE MIR 68 225 -37 29 47 0 0 chr12 29809474 29809517 -113976938 + AT_rich Low_complexity Low_complexity 1 43 0 253 266 211 23 chr12 29809517 29809645 -113976810 + L2 LINE L2 3162 3313 0 323 371 27 14 chr12 29810006 29810227 -113976228 - L2 LINE L2 -2891 423 200 859 277 137 17 chr12 29811329 29811788 -113974667 + L2 LINE L2 2199 2712 -602 737 224 88 5 chr12 29813109 29813301 -113973154 + MER3 DNA MER1_type 1 208 -1 284 315 140 0 chr12 29813896 29814039 -113972416 - MIR SINE MIR -15 247 85 555 251 153 6 chr12 29814914 29815097 -113971358 + MIR SINE MIR 34 243 -19 1736 108 100 0 chr12 29815221 29815480 -113970975 + AluSc SINE Alu 1 285 -24 216 0 0 0 chr12 29815676 29815700 -113970755 + (T)n Simple_repeat Simple_repeat 1 24 0 1964 115 70 16 chr12 29816728 29817042 -113969413 - THE1B LTR MaLR -33 331 1 237 278 19 0 chr12 29817863 29817917 -113968538 + MLT1I LTR MaLR 345 399 -10 2154 96 10 17 chr12 29819116 29819417 -113967038 + AluSq SINE Alu 1 299 -14 452 355 6 24 chr12 29819512 29819678 -113966777 + MER5A DNA MER1_type 1 163 -26 1611 169 40 3 chr12 29819966 29820291 -113966164 + L1MA7 LINE L1 5953 6289 -2 1248 141 19 0 chr12 29820298 29820511 -113965944 + L1MA3 LINE L1 6089 6305 0 218 178 0 100 chr12 29820520 29820610 -113965845 + A-rich Low_complexity Low_complexity 1 81 0 348 282 115 13 chr12 29820879 29821036 -113965419 - MIR3 SINE MIR -67 141 2 699 167 19 141 chr12 29822797 29823024 -113963431 + MSTD LTR MaLR 198 396 0 13376 49 9 2 chr12 29823305 29825113 -113961342 + L1P LINE L1 2678 4498 -1648 214 322 186 35 chr12 29825483 29825741 -113960714 - L2 LINE L2 -167 3105 2809 424 317 156 0 chr12 29825870 29826075 -113960380 - MIR SINE MIR -6 256 20 344 342 68 37 chr12 29826900 29827090 -113959365 + L3 LINE CR1 1370 1565 -12 377 283 25 45 chr12 29828608 29828806 -113957649 - L2 LINE L2 -200 3072 2879 555 262 18 6 chr12 29829024 29829192 -113957263 + MER45A DNA AcHobo 9 178 0 207 285 109 31 chr12 29829241 29829434 -113957021 - L2 LINE L2 -445 2869 2662 586 228 63 6 chr12 29829807 29829965 -113956490 + MER5A DNA MER1_type 1 167 -22 585 168 26 0 chr12 29831114 29831227 -113955228 + AluJb SINE Alu 189 304 -8 1917 167 57 19 chr12 29831227 29831593 -113954862 + MSTB LTR MaLR 47 426 0 219 287 171 31 chr12 29832530 29832659 -113953796 + L2 LINE L2 3167 3313 0 299 234 28 75 chr12 29834367 29834474 -113951981 - MIR SINE MIR -14 248 147 537 242 93 19 chr12 29834548 29834709 -113951746 - MIR SINE MIR -52 210 38 29 0 0 0 chr12 29835179 29835208 -113951247 + AT_rich Low_complexity Low_complexity 1 29 0 1952 158 21 0 chr12 29836276 29836656 -113949799 + L1MA1 LINE L1 5620 6007 -295 324 235 0 15 chr12 29836657 29836725 -113949730 + HAL1 LINE L1 1153 1219 -1288 265 264 101 23 chr12 29836848 29836977 -113949478 + HAL1 LINE L1 1377 1515 -992 1066 266 69 17 chr12 29836991 29837409 -113949046 + HAL1 LINE L1 1566 2005 -502 846 280 77 31 chr12 29837411 29837450 -113949005 + MLT1H LTR MaLR 140 176 -373 2191 125 0 3 chr12 29837450 29837762 -113948693 - AluSx SINE Alu -1 311 1 846 280 77 31 chr12 29837762 29838047 -113948408 + MLT1H LTR MaLR 176 479 -70 7225 201 75 28 chr12 29838048 29840089 -113946366 - Cheshire DNA MER1_type 0 2420 285 478 231 10 0 chr12 29840108 29840212 -113946243 - Cheshire DNA MER1_type -2313 107 3 228 170 38 0 chr12 29840220 29840273 -113946182 + MLT1H LTR MaLR 480 534 -15 274 297 7 45 chr12 29840289 29840444 -113946011 + HAL1 LINE L1 2156 2304 -203 559 177 26 0 chr12 29890728 29890841 -113895614 + AluJb SINE Alu 189 304 -8 2048 167 57 19 chr12 29890841 29891207 -113895248 + MSTB LTR MaLR 47 426 0 210 287 171 31 chr12 29892143 29892272 -113894183 + L2 LINE L2 3167 3313 0 452 282 28 77 chr12 29893874 29894055 -113892400 + MIR SINE MIR 11 182 -80 301 234 28 75 chr12 29894034 29894141 -113892314 - MIR SINE MIR -14 248 147 * 533 242 93 19 chr12 29894215 29894376 -113892079 - MIR SINE MIR -52 210 38 2017 110 21 21 chr12 29895235 29895526 -113890929 + AluSx SINE Alu 21 311 -1 482 274 116 7 chr12 29896489 29896635 -113889820 - MIR3 SINE MIR -17 191 30 345 353 133 0 chr12 29897074 29897224 -113889231 - L2 LINE L2 -4 3268 3099 613 274 63 31 chr12 29897290 29897513 -113888942 + MER20B DNA MER1_type 38 267 -516 1222 122 0 0 chr12 29897513 29897714 -113888741 - AluSg/x SINE Alu 0 327 127 2373 86 0 7 chr12 29897719 29898022 -113888433 - AluY SINE Alu -10 301 1 573 230 85 12 chr12 29898023 29898188 -113888267 + MER20B DNA MER1_type 258 434 -349 264 30 0 0 chr12 29899302 29899335 -113887120 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 184 222 0 0 chr12 29900259 29900295 -113886160 - L2 LINE L2 -48 3224 3189 309 204 0 120 chr12 29901272 29901380 -113885075 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29901650 29902009 -113884446 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29902009 29902389 -113884066 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29902389 29902428 -113884027 - L1MEc LINE L1 -3146 3069 3034 1393 231 148 7 chr12 29902431 29902973 -113883482 - L1MEc LINE L1 -3296 2919 2454 1797 176 14 43 chr12 29902973 29903185 -113883270 + L1PA15 LINE L1 5829 6029 -136 1845 174 0 29 chr12 29903185 29903501 -113882954 + AluSx SINE Alu 1 307 -5 1797 176 14 43 chr12 29903501 29903635 -113882820 + L1PA15 LINE L1 6029 6165 0 1393 231 148 7 chr12 29903635 29903727 -113882728 - L1MEc LINE L1 -3761 2454 2376 7770 20 0 0 chr12 29903727 29904754 -113881701 + L1PA3 LINE L1 5128 6154 -1 1393 231 148 7 chr12 29904754 29905143 -113881312 - L1MEc LINE L1 -3839 2376 1650 1208 203 33 61 chr12 29905169 29905499 -113880956 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29905539 29905678 -113880777 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29906673 29906752 -113879703 + L2 LINE L2 3227 3310 -3 2386 80 0 10 chr12 29906993 29907306 -113879149 + AluY SINE Alu 1 310 -1 1082 246 3 42 chr12 29907559 29907844 -113878611 + MER93b LTR ERV1 98 371 -2 1813 182 30 43 chr12 29907885 29908280 -113878175 + MLT1B LTR MaLR 1 390 0 303 330 46 29 chr12 29908290 29908463 -113877992 + MER20B DNA MER1_type 2 177 -606 878 273 49 33 chr12 29909581 29909831 -113876624 - L1MEc LINE L1 -4102 2294 2033 1768 90 144 10 chr12 29909831 29910143 -113876312 - L1MA3 LINE L1 0 6305 5952 878 273 49 33 chr12 29910143 29910317 -113876138 - L1MEc LINE L1 -4363 2033 1863 * 3020 241 61 18 chr12 29910313 29911644 -113874811 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29911640 29912628 -113873827 - L1MEc LINE L1 -4524 1872 810 * 3596 174 38 6 chr12 29912661 29913339 -113873116 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29913379 29914088 -113872367 - L1MEc LINE L1 -5652 744 32 669 134 0 0 chr12 29915155 29915252 -113871203 + FLAM_C SINE Alu 21 117 -26 240 59 0 0 chr12 29915252 29915286 -113871169 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 320 0 25 0 chr12 29915293 29915333 -113871122 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1427 218 13 13 chr12 29915335 29915638 -113870817 + AluJo SINE Alu 3 305 -7 2245 149 142 0 chr12 29918310 29918725 -113867730 - MER101 LTR ERV1 0 474 1 333 333 103 0 chr12 29919167 29919341 -113867114 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29921179 29921730 -113864725 - Charlie1a DNA MER1_type 0 1455 868 1691 251 55 31 chr12 29921786 29922336 -113864119 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29922676 29922785 -113863670 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29923407 29923427 -113863028 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29923832 29923860 -113862595 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29925099 29925771 -113860684 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29926453 29926585 -113859870 - Tigger2 DNA MER2_type -102 2616 2489 2336 117 0 0 chr12 29926585 29926893 -113859562 + AluSx SINE Alu 1 308 -4 1504 109 73 44 chr12 29926893 29927035 -113859420 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29927062 29927173 -113859282 + Tigger2 DNA MER2_type 2592 2702 -16 378 0 0 0 chr12 29927173 29927215 -113859240 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr12 29927215 29927239 -113859216 + AT_rich Low_complexity Low_complexity 1 24 0 282 328 72 40 chr12 29928143 29928268 -113858187 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29928746 29928777 -113857678 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29928795 29929011 -113857444 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29929205 29929343 -113857112 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29930536 29930950 -113855505 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29930957 29931178 -113855277 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29932309 29932609 -113853846 + AluSx SINE Alu 1 307 0 354 314 98 58 chr12 29933514 29933788 -113852667 - HAL1 LINE L1 -910 1597 1313 11012 140 28 60 chr12 29934140 29934461 -113851994 - Tigger1 DNA MER2_type -310 2108 1778 2270 84 3 7 chr12 29934461 29934760 -113851695 - AluY SINE Alu -2 309 12 11012 140 28 60 chr12 29934760 29936617 -113849838 - Tigger1 DNA MER2_type -640 1778 1 411 319 51 7 chr12 29936650 29936788 -113849667 - MER5B DNA MER1_type -11 167 24 353 385 62 5 chr12 29937491 29937686 -113848769 - MIR SINE MIR -55 207 2 302 213 67 0 chr12 29938938 29939013 -113847442 + LTR33 LTR ERVL 10 89 -432 228 191 60 24 chr12 29939179 29939263 -113847192 - Charlie5 DNA MER1_type -160 2452 2366 885 358 22 25 chr12 29939316 29939760 -113846695 + L1M3c LINE L1 174 616 -5697 2162 231 114 33 chr12 29939969 29941081 -113845374 + L1M3c LINE L1 910 1872 -4512 680 156 127 12 chr12 29941193 29941366 -113845089 - Charlie5 DNA MER1_type -2419 193 1 26 0 0 0 chr12 29942416 29942442 -113844013 + AT_rich Low_complexity Low_complexity 1 26 0 291 285 31 23 chr12 29942480 29942610 -113843845 + L1ME4a LINE L1 5952 6082 -39 23 0 0 0 chr12 29942688 29942711 -113843744 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr12 29943542 29943569 -113842886 + (TG)n Simple_repeat Simple_repeat 2 28 0 565 212 120 50 chr12 29943919 29944495 -113841960 + LTR48 LTR ERV1 5 542 0 688 305 156 35 chr12 29945118 29945830 -113840625 + HAL1 LINE L1 1127 1924 -583 200 195 0 0 chr12 29945975 29946016 -113840439 + GA-rich Low_complexity Low_complexity 4 44 0 510 242 78 7 chr12 29946694 29946764 -113839691 + MER69A DNA AcHobo 14 78 -2448 441 0 0 0 chr12 29946764 29946813 -113839642 + (CA)n Simple_repeat Simple_repeat 2 50 0 510 242 78 7 chr12 29946813 29946895 -113839560 + MER69A DNA AcHobo 78 177 0 37 52 0 0 chr12 29947798 29947856 -113838599 + AT_rich Low_complexity Low_complexity 1 58 0 322 302 21 0 chr12 29948093 29948189 -113838266 + MIR SINE MIR 49 146 -62 622 229 22 71 chr12 29948203 29948386 -113838069 + MER5A DNA MER1_type 4 177 -12 410 296 177 22 chr12 29948657 29948883 -113837572 + MIR SINE MIR 2 262 0 26 30 0 0 chr12 29948883 29948916 -113837539 + AT_rich Low_complexity Low_complexity 1 33 0 839 256 80 4 chr12 29949421 29949683 -113836772 + MER99 DNA DNA 546 827 -1 585 243 99 39 chr12 29949875 29950159 -113836296 - LTR43 LTR ERV1 -148 454 154 210 358 37 0 chr12 29950877 29950958 -113835497 - L2 LINE L2 -257 3015 2932 245 400 44 7 chr12 29951383 29951518 -113834937 - L2 LINE L2 -12 3260 3121 336 314 76 0 chr12 29952109 29952227 -113834228 - MIR3 SINE MIR -52 156 30 214 194 31 71 chr12 29952947 29953045 -113833410 + CT-rich Low_complexity Low_complexity 3 96 0 252 196 0 0 chr12 29953045 29953091 -113833364 - L2 LINE L2 -24 3248 3203 280 329 0 0 chr12 29953298 29953368 -113833087 + MIR SINE MIR 1 70 -192 6714 270 60 41 chr12 29953746 29954322 -113832133 - L1M1 LINE L1 -3899 2833 2269 2173 104 0 4 chr12 29954322 29954600 -113831855 - AluSc SINE Alu -32 277 1 6714 270 60 41 chr12 29954600 29957463 -113828992 - L1M1 LINE L1 -4463 2269 2 240 240 73 9 chr12 29957874 29957993 -113828462 - L1MC/D LINE L1 -485 5636 5573 329 286 232 14 chr12 29958420 29958640 -113827815 + L3 LINE CR1 1306 1573 -4 374 222 46 19 chr12 29958644 29958752 -113827703 - MIR SINE MIR -6 256 146 38 22 0 0 chr12 29959201 29959246 -113827209 + AT_rich Low_complexity Low_complexity 1 45 0 375 202 0 0 chr12 29960581 29960665 -113825790 + (TA)n Simple_repeat Simple_repeat 1 84 0 456 192 16 8 chr12 29961352 29961529 -113824926 - MLT1C LTR MaLR 0 467 241 363 295 44 9 chr12 29962450 29962677 -113823778 + L1M3 LINE L1 4430 4664 -1482 14908 176 21 24 chr12 29962934 29966964 -113819491 + L1MA3 LINE L1 2288 6305 0 22 0 0 0 chr12 29966964 29966986 -113819469 + AT_rich Low_complexity Low_complexity 1 22 0 226 261 76 22 chr12 29967322 29967414 -113819041 + L1M3 LINE L1 5349 5445 -723 285 254 127 34 chr12 29967513 29967718 -113818737 + L1ME LINE L1 5562 5785 -336 1097 259 87 19 chr12 29967723 29968093 -113818362 - MLT1I LTR MaLR -9 400 6 359 202 0 40 chr12 29968207 29968306 -113818149 + L1MB8 LINE L1 6084 6178 0 268 355 0 16 chr12 29968582 29968703 -113817752 + LTR16C LTR ERVL 363 481 -10 200 340 0 0 chr12 29968854 29968904 -113817551 + L2 LINE L2 3195 3244 -28 328 206 0 15 chr12 29969684 29969752 -113816703 + LTR67 LTR ERVL 450 516 -41 4585 100 7 7 chr12 29970269 29970956 -113815499 + L1PB1 LINE L1 5464 6150 -1 1915 224 54 9 chr12 29971270 29971712 -113814743 + MLT1C LTR MaLR 6 467 0 544 139 0 0 chr12 29972395 29972481 -113813974 + AluS SINE Alu 1 86 -227 225 94 0 0 chr12 29972773 29972805 -113813650 + (TAG)n Simple_repeat Simple_repeat 1 32 0 685 271 33 0 chr12 29972834 29973015 -113813440 - MIR SINE MIR -5 257 71 1384 140 3 8 chr12 29973038 29973354 -113813101 + THE1B LTR MaLR 1 364 0 207 325 138 69 chr12 29975048 29975208 -113811247 - MIR SINE MIR 0 262 92 772 240 80 22 chr12 29976122 29976347 -113810108 - MIR SINE MIR 0 262 25 188 193 18 35 chr12 29976422 29976479 -113809976 + MIR SINE MIR 99 154 -108 219 88 0 0 chr12 29977468 29977502 -113808953 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 2143 114 13 0 chr12 29978687 29978994 -113807461 + AluSx SINE Alu 1 311 -1 473 319 55 6 chr12 29979368 29979550 -113806905 - MIR SINE MIR -52 210 20 2137 168 92 10 chr12 29980753 29981164 -113805291 - Tigger2 DNA MER2_type -1 2717 2273 406 145 14 14 chr12 29981154 29981223 -113805232 - Tigger2 DNA MER2_type -2649 69 1 * 2229 123 0 0 chr12 29981299 29981599 -113804856 + AluSx SINE Alu 1 300 -12 543 173 29 0 chr12 29981635 29981739 -113804716 - MLT1I LTR MaLR 0 409 303 22 0 0 0 chr12 29982953 29982975 -113803480 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 29983140 29983164 -113803291 + (TG)n Simple_repeat Simple_repeat 1 24 0 16500 36 0 0 chr12 29985342 29987436 -113799019 + L1PA5 LINE L1 3397 5490 -664 2390 31 0 3 chr12 29987436 29987719 -113798736 + L1PA5 LINE L1 5859 6146 -8 768 273 5 0 chr12 29988052 29988239 -113798216 - MER5A DNA MER1_type 0 189 2 796 259 19 13 chr12 29989161 29989477 -113796978 - L1MEc LINE L1 -1511 4704 4387 701 291 88 33 chr12 29989483 29989882 -113796573 + LTR52 LTR ERVL 1 421 0 746 267 76 15 chr12 29989884 29990214 -113796241 - L1MEc LINE L1 -1831 4384 4035 8796 181 23 38 chr12 29990215 29994201 -113792254 - L1P3 LINE L1 -1063 5398 10 1802 261 107 16 chr12 29994209 29995248 -113791207 - L1MEc LINE L1 -2358 3857 2627 1237 242 132 47 chr12 29995251 29995332 -113791123 - LTR40a LTR ERVL 0 519 446 1457 213 49 36 chr12 29995332 29995717 -113790738 - MLT1B LTR MaLR 0 390 1 1237 242 132 47 chr12 29995717 29996081 -113790374 - LTR40a LTR ERVL -73 446 36 600 268 0 7 chr12 29996101 29996243 -113790212 + MER45A DNA AcHobo 38 178 0 856 277 123 31 chr12 29996317 29997264 -113789191 - L1MEc LINE L1 -3594 2621 1627 1700 181 28 3 chr12 29997364 29997689 -113788766 - L1MA8 LINE L1 -183 7527 7195 501 65 83 24 chr12 29997695 29997863 -113788592 + (TA)n Simple_repeat Simple_repeat 1 178 0 612 63 66 38 chr12 29997889 29998399 -113788056 + (TA)n Simple_repeat Simple_repeat 1 524 0 776 145 7 14 chr12 29998425 29998563 -113787892 - L1MA8 LINE L1 -487 7223 7087 * 11509 190 19 14 chr12 29998561 30001178 -113785277 - L1MA8 LINE L1 -743 6822 4252 624 189 7 52 chr12 30001186 30001339 -113785116 - L1MA8 LINE L1 -4107 3458 3313 350 148 0 38 chr12 30001367 30001577 -113784878 + AluJb SINE Alu 4 294 -8 21 0 0 0 chr12 30001664 30001685 -113784770 + AT_rich Low_complexity Low_complexity 1 21 0 2290 114 0 0 chr12 30001729 30002036 -113784419 + AluSc SINE Alu 3 309 0 6215 89 11 0 chr12 30002083 30003649 -113782806 - L1PA8A LINE L1 -13 6118 4547 2460 18 0 0 chr12 30003652 30003931 -113782524 - L1P1 LINE L1 -376 5779 5501 25 31 0 0 chr12 30003946 30003978 -113782477 + AT_rich Low_complexity Low_complexity 1 32 0 849 282 82 31 chr12 30003987 30005034 -113781421 + L1M4 LINE L1 4333 5437 -741 * 1378 189 164 6 chr12 30005028 30005345 -113781110 - L1MCa LINE L1 -6040 386 20 459 312 87 14 chr12 30006148 30006424 -113780031 - L1ME LINE L1 -434 5728 5433 * 10326 210 65 28 chr12 30006423 30008689 -113777766 + L1MC1 LINE L1 386 2566 -4047 1619 189 33 7 chr12 30008689 30008991 -113777464 + AluSx SINE Alu 3 312 0 10326 210 65 28 chr12 30008991 30012532 -113773923 + L1MC1 LINE L1 2566 6442 -171 814 306 92 48 chr12 30012664 30013118 -113773337 + L2 LINE L2 918 1391 -1923 242 321 117 43 chr12 30013085 30013247 -113773208 + L2 LINE L2 3104 3277 -36 * 340 351 37 43 chr12 30013805 30014104 -113772351 + L1MEc LINE L1 975 1271 -5554 414 268 129 28 chr12 30014134 30014685 -113771770 + L1MEc LINE L1 1280 1943 -4882 2168 266 50 29 chr12 30014691 30015721 -113770734 + L1M2 LINE L1 1638 2689 -4160 20591 158 10 20 chr12 30015753 30020567 -113765888 + L1P3 LINE L1 6 4841 -1620 246 32 0 0 chr12 30020596 30020627 -113765828 + (TAA)n Simple_repeat Simple_repeat 3 33 0 29305 42 7 2 chr12 30020635 30025073 -113761382 - HAL1b LINE L1 -23 6132 316 819 284 95 20 chr12 30025450 30026010 -113760445 - L1M4 LINE L1 -2180 3966 3341 262 300 0 0 chr12 30027067 30027137 -113759318 + MIR3 SINE MIR 139 208 0 200 313 0 20 chr12 30027324 30027423 -113759032 + T-rich Low_complexity Low_complexity 6 102 0 198 328 0 0 chr12 30027626 30027687 -113758768 + MIR SINE MIR 144 204 -58 22 35 0 0 chr12 30027877 30027906 -113758549 + AT_rich Low_complexity Low_complexity 1 29 0 566 330 38 38 chr12 30029252 30029652 -113756803 - L1MC/D LINE L1 -2028 5780 5381 381 354 139 11 chr12 30029807 30030254 -113756201 - L1MC/D LINE L1 -1071 5075 4572 370 268 110 83 chr12 30030404 30030765 -113755690 - MLT1J2 LTR MaLR -78 368 22 378 355 144 10 chr12 30031730 30032231 -113754224 + L2 LINE L2 2222 2789 -525 3115 158 66 34 chr12 30032396 30032416 -113754039 - L1MC2 LINE L1 -1 6343 6325 2338 86 3 3 chr12 30032416 30032719 -113753736 + AluSp SINE Alu 4 306 -7 3115 158 66 34 chr12 30032719 30032953 -113753502 - L1MC2 LINE L1 -19 6325 6100 2019 134 45 25 chr12 30032953 30033310 -113753145 - THE1B LTR MaLR 0 364 1 3115 158 66 34 chr12 30033310 30033705 -113752750 - L1MC2 LINE L1 -244 6100 5672 2665 142 5 27 chr12 30033707 30034145 -113752310 - MSTA LTR MaLR 0 428 1 216 411 115 21 chr12 30034247 30034490 -113751965 - L2 LINE L2 -4 3268 3003 399 256 72 40 chr12 30034752 30034877 -113751578 + L2 LINE L2 3180 3308 -5 233 274 102 13 chr12 30035918 30036075 -113750380 + HAL1 LINE L1 1005 1175 -1332 650 274 35 55 chr12 30036154 30036464 -113749991 + HAL1 LINE L1 1670 1973 -534 1066 246 91 27 chr12 30036504 30036881 -113749574 - MLT2E LTR ERVL -8 620 171 1827 171 125 18 chr12 30036881 30037266 -113749189 + MSTA LTR MaLR 1 426 -2 1066 246 91 27 chr12 30037266 30037449 -113749006 - MLT2E LTR ERVL -457 171 1 316 276 94 18 chr12 30037648 30037818 -113748637 + HAL1 LINE L1 2040 2222 -285 1885 109 11 4 chr12 30037822 30038087 -113748368 - AluSx SINE Alu -41 271 5 496 248 9 0 chr12 30039269 30039378 -113747077 - MER81 DNA DNA -4 110 1 621 0 83 0 chr12 30039829 30039938 -113746517 + (TA)n Simple_repeat Simple_repeat 1 118 0 2665 148 21 48 chr12 30140876 30141466 -113644989 + MER51A LTR ERV1 1 634 0 2552 155 141 34 chr12 30141582 30142137 -113644318 - LTR18B LTR ERVL 0 614 1 9728 159 22 1 chr12 30142291 30143911 -113642544 - HERVL18 LTR ERVL 0 6047 4394 3696 186 3 3 chr12 30143913 30144541 -113641914 - HERVL18 LTR ERVL -2468 3579 2952 1103 235 4 6 chr12 30144555 30144837 -113641618 - HERVL18 LTR ERVL -2971 3076 2720 * 8444 164 5 7 chr12 30144836 30146290 -113640165 - HERVL18 LTR ERVL -3595 2452 939 1550 164 11 4 chr12 30146327 30146595 -113639860 - HERVL18 LTR ERVL -5774 273 4 2341 142 195 45 chr12 30146628 30147162 -113639293 - LTR18B LTR ERVL 0 614 1 825 305 65 11 chr12 30147170 30147524 -113638931 + MLT1K LTR MaLR 216 588 0 255 220 0 0 chr12 30147847 30147897 -113638558 - MER52-int LTR ERV1 -179 6912 6863 316 143 16 16 chr12 30147997 30148060 -113638395 - LTR9 LTR ERV1 -549 63 1 289 250 0 0 chr12 30148096 30148152 -113638303 + MER2 DNA MER2_type 290 345 0 1444 285 111 41 chr12 30148167 30149686 -113636769 - L1MEc LINE L1 -4549 1666 92 520 55 96 0 chr12 30149716 30149789 -113636666 + MADE1 DNA Mariner 1 80 0 1769 217 46 63 chr12 30149856 30150284 -113636171 + LTR40a LTR ERVL 1 420 -99 2440 84 7 0 chr12 30150284 30150592 -113635863 - AluY SINE Alu -1 310 1 1769 217 46 63 chr12 30150592 30150688 -113635767 + LTR40a LTR ERVL 420 516 -3 331 288 201 22 chr12 30150757 30150941 -113635514 - MIR SINE MIR 0 262 46 2519 186 67 37 chr12 30151879 30152378 -113634077 + MLT2B3 LTR ERVL 1 519 -35 749 49 10 0 chr12 30152378 30152480 -113633975 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 2519 186 67 37 chr12 30152480 30152518 -113633937 + MLT2B3 LTR ERVL 519 554 0 22 35 0 0 chr12 30154009 30154038 -113632417 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 30154337 30154361 -113632094 + AT_rich Low_complexity Low_complexity 1 24 0 610 154 31 154 chr12 30155359 30155498 -113630957 + MER3 DNA MER1_type 2 104 -105 647 216 0 0 chr12 30155498 30155623 -113630832 - FLAM_C SINE Alu -7 126 2 610 154 31 154 chr12 30155623 30155710 -113630745 + MER3 DNA MER1_type 104 200 -9 279 288 129 30 chr12 30155899 30156031 -113630424 - MIR SINE MIR -34 228 84 201 121 0 0 chr12 30156056 30156089 -113630366 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 376 271 72 58 chr12 30156659 30156950 -113629505 - L1MC/D LINE L1 -2163 5645 5351 933 186 26 26 chr12 30157668 30157862 -113628593 + MER51D LTR ERV1 464 657 0 317 146 0 0 chr12 30158635 30158683 -113627772 + MER34-int LTR ERV1 728 775 -7041 466 309 34 15 chr12 30158809 30159104 -113627351 + MER34-int LTR ERV1 1544 1625 -5051 281 111 42 69 chr12 30159560 30159632 -113626823 + MER34-int LTR ERV1 1722 1791 -6329 1213 188 87 58 chr12 30159717 30160309 -113626146 + MER34-int LTR ERV1 1772 4170 -2506 564 235 13 7 chr12 30160576 30160725 -113625730 + MER34-int LTR ERV1 7667 7816 0 1059 157 10 25 chr12 30161064 30161261 -113625194 + MER51D LTR ERV1 464 657 0 285 254 110 51 chr12 30161815 30161933 -113624522 + MIR SINE MIR 134 258 -4 657 188 6 56 chr12 30162045 30162205 -113624250 - LTR32 LTR ERVL -1 470 319 498 152 0 0 chr12 30162259 30162338 -113624117 - LTR32 LTR ERVL -379 92 14 889 93 7 22 chr12 30162667 30162806 -113623649 + AluY SINE Alu 175 311 0 861 215 23 6 chr12 30163192 30163369 -113623086 - MER5A DNA MER1_type -9 180 1 27 73 0 0 chr12 30164759 30164814 -113621641 + AT_rich Low_complexity Low_complexity 1 55 0 188 281 24 49 chr12 30166455 30166537 -113619918 + MIR SINE MIR 58 137 -71 1672 198 55 38 chr12 30166584 30167060 -113619395 + Charlie1b DNA MER1_type 33 516 -7 255 260 0 39 chr12 30167223 30167300 -113619155 - MER5B DNA MER1_type 0 178 105 699 174 11 45 chr12 30168372 30168550 -113617905 - L1MB8 LINE L1 0 6178 6007 342 310 76 6 chr12 30168597 30168755 -113617700 + MER34 LTR ERV1 2 170 -372 789 208 74 27 chr12 30168794 30169070 -113617385 + MER39 LTR ERV1 304 526 -16 198 0 0 0 chr12 30169070 30169092 -113617363 + (A)n Simple_repeat Simple_repeat 1 22 0 968 140 124 28 chr12 30169312 30169562 -113616893 - L1MB8 LINE L1 -197 5981 5708 303 266 147 18 chr12 30169784 30169893 -113616562 - MIR3 SINE MIR -1 207 85 571 151 158 22 chr12 30170285 30170424 -113616031 - MER31B LTR ERV1 -307 159 2 501 261 12 118 chr12 30170678 30170923 -113615532 - MIR SINE MIR -13 249 31 1549 192 0 54 chr12 30172599 30172912 -113613543 + AluJb SINE Alu 1 296 -16 554 248 102 6 chr12 30172954 30173111 -113613344 + MIR SINE MIR 91 262 0 463 290 115 37 chr12 30173621 30173838 -113612617 + MIR SINE MIR 29 262 0 1705 56 0 5 chr12 30175591 30175807 -113610648 + L1PA5 LINE L1 5940 6154 0 30 59 0 0 chr12 30176051 30176102 -113610353 + AT_rich Low_complexity Low_complexity 1 51 0 1836 178 0 0 chr12 30176246 30176550 -113609905 - AluSx SINE Alu -8 304 1 569 268 105 86 chr12 30177243 30177605 -113608850 - L2 LINE L2 -1 3312 2944 1136 276 87 83 chr12 30177635 30178570 -113607885 - L2 LINE L2 -43 3270 2310 881 343 107 22 chr12 30178571 30179218 -113607237 - L2 LINE L2 -382 2932 2231 284 328 46 23 chr12 30179252 30179383 -113607072 - L2 LINE L2 -1670 1644 1511 347 314 57 8 chr12 30179431 30179555 -113606900 - L2 LINE L2 -1 3271 3142 1069 358 160 26 chr12 30180143 30180451 -113606004 + L2 LINE L2 335 600 -2672 360 119 0 0 chr12 30180451 30180510 -113605945 + (CA)n Simple_repeat Simple_repeat 2 60 0 1069 358 160 26 chr12 30180510 30182489 -113603966 + L2 LINE L2 600 3055 -217 21 0 0 0 chr12 30182540 30182561 -113603894 + AT_rich Low_complexity Low_complexity 1 21 0 397 211 33 0 chr12 30182664 30182754 -113603701 - MIR SINE MIR 0 262 170 287 217 205 12 chr12 30182770 30182853 -113603602 + L2 LINE L2 3169 3267 -5 1558 138 54 0 chr12 30183560 30183857 -113602598 + L1MA6 LINE L1 5988 6300 0 1777 147 42 66 chr12 30184052 30184433 -113602022 - THE1C LTR MaLR -3 372 1 5768 180 66 28 chr12 30184862 30186263 -113600192 + Charlie1a DNA MER1_type 1 1454 -1 463 138 11 11 chr12 30186485 30186572 -113599883 - MLT1E1 LTR MaLR 0 654 568 783 194 156 84 chr12 30186592 30186912 -113599543 - MLT1E1 LTR MaLR -308 346 4 279 0 0 0 chr12 30187115 30187146 -113599309 + (TG)n Simple_repeat Simple_repeat 2 32 0 2279 122 3 0 chr12 30188464 30188767 -113597688 - AluSx SINE Alu -8 304 1 223 284 12 25 chr12 30188854 30188935 -113597520 + (TATG)n Simple_repeat Simple_repeat 4 83 0 226 299 158 31 chr12 30190455 30190582 -113595873 + MIR SINE MIR 11 153 -109 2634 181 25 11 chr12 30190584 30191132 -113595323 - MER89 LTR ERV1 0 559 4 309 281 0 0 chr12 30191594 30191658 -113594797 + L2 LINE L2 3186 3249 -23 261 0 0 0 chr12 30191665 30191694 -113594761 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2336 82 0 3 chr12 30192648 30192942 -113593513 - AluSc SINE Alu -16 293 1 387 280 32 48 chr12 30192950 30193075 -113593380 - MIR SINE MIR -91 171 49 238 208 19 142 chr12 30193120 30193226 -113593229 + MER5A DNA MER1_type 96 188 -1 196 382 20 10 chr12 30193226 30193323 -113593132 + L2 LINE L2 2571 2668 -646 23 54 0 0 chr12 30193723 30193760 -113592695 + AT_rich Low_complexity Low_complexity 1 37 0 8703 51 2 7 chr12 30195911 30196988 -113589467 - MER11C LTR ERVK 0 1071 1 369 352 7 28 chr12 30197562 30197704 -113588751 + MER5A DNA MER1_type 49 187 -2 188 115 250 0 chr12 30197736 30197788 -113588667 - L2 LINE L2 0 3313 3249 195 352 69 60 chr12 30197994 30198176 -113588279 - MIR SINE MIR -64 144 9 5109 180 21 5 chr12 30198475 30199445 -113587010 + ERVL-D LTR ERVL 1377 2361 -3403 5857 138 42 9 chr12 30199447 30200472 -113585983 + ERVL-D LTR ERVL 4699 5757 -7 1727 198 22 14 chr12 30200472 30200835 -113585620 + MLT2D LTR ERVL 1 366 -48 354 148 22 44 chr12 30200837 30201020 -113585435 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 378 74 0 0 chr12 30201038 30201092 -113585363 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 252 111 56 19 chr12 30201129 30201183 -113585272 + MLT2D LTR ERVL 465 520 0 242 255 39 0 chr12 30201505 30201556 -113584899 + L2 LINE L2 3212 3264 -8 600 236 31 0 chr12 30202034 30202161 -113584294 - FLAM_A SINE Alu -2 131 1 2253 98 7 3 chr12 30202332 30202629 -113583826 + AluSx SINE Alu 1 298 -14 1581 175 40 67 chr12 30202729 30203130 -113583325 - MLT1B LTR MaLR 0 390 1 1278 137 0 0 chr12 30203275 30203458 -113582997 - AluSp SINE Alu -1 312 130 2058 142 0 7 chr12 30203524 30203834 -113582621 - AluSx SINE Alu -4 308 1 1659 165 0 8 chr12 30203858 30204124 -113582331 - AluJo SINE Alu -22 290 27 4427 117 286 97 chr12 30204125 30205548 -113580907 + pTR5 LTR ERV1 745 2436 -2 2193 109 0 35 chr12 30205724 30206036 -113580419 + AluSx SINE Alu 1 301 -11 764 223 13 65 chr12 30206802 30207031 -113579424 + MER20 DNA MER1_type 2 218 -1 299 164 66 0 chr12 30207387 30207448 -113579007 + L2 LINE L2 3232 3296 -17 25 51 0 0 chr12 30207721 30207760 -113578695 + AT_rich Low_complexity Low_complexity 1 39 0 344 115 0 0 chr12 30207835 30207887 -113578568 - MADE1 DNA Mariner -26 54 3 10743 157 119 33 chr12 30208174 30210011 -113576444 + L1MA3 LINE L1 966 2644 -5080 2134 115 3 3 chr12 30210011 30210328 -113576127 + AluSp SINE Alu 1 317 0 10743 157 119 33 chr12 30210328 30212155 -113574300 + L1MA3 LINE L1 2644 4313 -3411 623 171 0 57 chr12 30212155 30212322 -113574133 + FLAM_C SINE Alu 1 160 0 10743 157 119 33 chr12 30212322 30214464 -113571991 + L1MA3 LINE L1 4313 7722 -2 910 239 32 5 chr12 30214956 30215174 -113571281 - MIR SINE MIR -2 260 37 357 237 132 53 chr12 30215508 30215698 -113570757 + L2 LINE L2 3107 3311 -2 8382 65 10 2 chr12 30216364 30217426 -113569029 - MER11C LTR ERVK 0 1071 1 634 350 103 18 chr12 30217538 30217926 -113568529 + L2 LINE L2 2848 3268 -4 738 276 67 28 chr12 30219397 30219649 -113566806 - MIR SINE MIR -2 260 3 7023 159 16 35 chr12 30219769 30220492 -113565963 - L1P3 LINE L1 -4472 1989 1254 186 71 0 0 chr12 30220492 30220520 -113565935 + (TTG)n Simple_repeat Simple_repeat 3 30 0 7023 159 16 35 chr12 30220520 30221710 -113564745 - L1P3 LINE L1 -5207 1254 56 4184 26 18 0 chr12 30221716 30222215 -113564240 - L1PA4 LINE L1 -2 6153 5646 2522 84 119 7 chr12 30222215 30222618 -113563837 + LTR7 LTR ERV1 1 448 -2 645 54 32 0 chr12 30222620 30222713 -113563742 + HERVH LTR ERV1 1 96 -7617 2674 80 120 0 chr12 30222729 30223129 -113563326 - LTR7 LTR ERV1 -2 448 1 1132 0 0 0 chr12 30223129 30223257 -113563198 - L1P1 LINE L1 -505 5650 5523 356 147 0 15 chr12 30223255 30223323 -113563132 - L1P3 LINE L1 -5806 69 3 * 363 123 0 18 chr12 30223605 30223662 -113562793 + MER5A DNA MER1_type 1 56 -133 448 308 34 7 chr12 30223677 30223823 -113562632 + MIR SINE MIR 11 160 -102 22 35 0 0 chr12 30224431 30224460 -113561995 + AT_rich Low_complexity Low_complexity 1 29 0 227 170 38 0 chr12 30224508 30224561 -113561894 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 123 0 0 chr12 30224561 30224626 -113561829 + Alu SINE Alu 236 300 -10 2215 95 0 7 chr12 30224644 30224938 -113561517 - AluSg SINE Alu -18 292 1 337 265 8 98 chr12 30225067 30225199 -113561256 - L2 LINE L2 -13 3259 3140 1838 187 13 0 chr12 30225586 30225891 -113560564 - AluJo SINE Alu -1 311 3 34 72 0 0 chr12 30225891 30225960 -113560495 + AT_rich Low_complexity Low_complexity 1 69 0 1462 190 3 39 chr12 30226005 30226310 -113560145 - AluJo SINE Alu -18 294 1 294 330 10 0 chr12 30227446 30227549 -113558906 + MIR SINE MIR 87 190 -72 2270 108 0 0 chr12 30227591 30227887 -113558568 - AluSx SINE Alu -16 296 1 882 262 99 30 chr12 30228232 30228625 -113557830 - MLT1J1 LTR MaLR -24 422 3 338 296 12 0 chr12 30229434 30229515 -113556940 - L2 LINE L2 0 3272 3191 505 237 105 18 chr12 30230711 30230930 -113555525 + L1ME4a LINE L1 5685 5922 -199 2501 32 0 0 chr12 30232494 30232803 -113553652 - AluY SINE Alu 0 309 1 413 79 0 16 chr12 30233189 30233252 -113553203 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2146 106 14 0 chr12 30233301 30233583 -113552872 + AluSc SINE Alu 1 286 -23 410 36 18 0 chr12 30233715 30233771 -113552684 + (CA)n Simple_repeat Simple_repeat 2 58 0 211 367 143 23 chr12 30233920 30234053 -113552402 - MIR3 SINE MIR -113 95 2 350 282 19 39 chr12 30234640 30234743 -113551712 - MIR SINE MIR -88 120 20 302 322 40 51 chr12 30234751 30234928 -113551527 + MER5B DNA MER1_type 1 175 -3 7049 124 11 5 chr12 30236594 30237826 -113548629 + L1MA1 LINE L1 4384 5631 -671 2178 144 0 0 chr12 30237826 30238131 -113548324 + AluSx SINE Alu 1 305 -7 7049 124 11 5 chr12 30238131 30238806 -113547649 + L1MA1 LINE L1 5631 6301 -1 409 278 97 23 chr12 30238916 30239092 -113547363 + MER5A DNA MER1_type 1 189 0 460 311 28 28 chr12 30239185 30239362 -113547093 - MER5A DNA MER1_type -6 183 7 1356 152 0 5 chr12 30240625 30240829 -113545626 - AluJb SINE Alu -109 203 1 1167 287 80 39 chr12 30241230 30241980 -113544475 - L1ME4a LINE L1 -54 6067 5287 2339 80 7 7 chr12 30242013 30242312 -113544143 - AluSq SINE Alu -14 299 1 2277 85 3 3 chr12 30242741 30243036 -113543419 - AluSq SINE Alu -18 295 1 232 235 84 50 chr12 30243156 30243275 -113543180 - L1 LINE L1 -1523 4623 4501 2900 3 0 0 chr12 30243419 30243730 -113542725 - AluYb8 SINE Alu -7 311 1 232 332 52 26 chr12 30243805 30243998 -113542457 - L1 LINE L1 -1908 4238 4041 198 286 24 60 chr12 30244233 30244317 -113542138 + L2 LINE L2 2596 2676 -638 571 269 142 10 chr12 30245182 30245379 -113541076 + MIR SINE MIR 4 226 -36 1875 81 101 68 chr12 30245426 30245722 -113540733 + AluSq SINE Alu 1 306 -7 27 49 0 0 chr12 30246032 30246073 -113540382 + AT_rich Low_complexity Low_complexity 1 41 0 2293 115 6 3 chr12 30246594 30246906 -113539549 + AluSq SINE Alu 1 313 0 237 327 128 48 chr12 30247358 30247716 -113538739 + L2 LINE L2 2826 3212 -60 270 0 0 0 chr12 30248292 30248322 -113538133 + (TTG)n Simple_repeat Simple_repeat 2 31 0 227 340 150 14 chr12 30249371 30249518 -113536937 - MIR SINE MIR -15 247 81 2425 68 10 7 chr12 30249615 30249924 -113536531 + AluY SINE Alu 2 311 0 197 363 47 18 chr12 30250138 30250309 -113536146 - L2 LINE L2 -398 2916 2741 281 320 96 37 chr12 30250793 30250971 -113535484 - MER5A DNA MER1_type -1 188 2 217 239 87 87 chr12 30252006 30252098 -113534357 - L2 LINE L2 -66 3206 3115 1902 161 13 13 chr12 30252790 30253100 -113533355 - AluJo SINE Alu -2 310 1 330 87 0 0 chr12 30255051 30255097 -113531358 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 357 43 0 0 chr12 30256336 30256383 -113530072 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr12 30256382 30256406 -113530049 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 252 0 0 0 chr12 30259329 30259357 -113527098 + (CA)n Simple_repeat Simple_repeat 1 28 0 210 273 30 15 chr12 30260192 30260258 -113526197 - MER5A DNA MER1_type -95 94 28 203 263 26 26 chr12 30260199 30260275 -113526180 + MER5A DNA MER1_type 114 189 0 * 333 293 0 0 chr12 30261023 30261122 -113525333 - L1M4 LINE L1 -2305 3841 3743 685 294 151 12 chr12 30261131 30261815 -113524640 - L1M4 LINE L1 -2535 3611 2833 211 341 35 24 chr12 30261849 30261934 -113524521 + MIR SINE MIR 1 86 -176 218 254 127 0 chr12 30261943 30262014 -113524441 - L2 LINE L2 -44 3269 3190 491 299 67 46 chr12 30262034 30262228 -113524227 + MIR SINE MIR 63 260 -2 331 318 23 53 chr12 30262399 30262531 -113523924 + L2 LINE L2 3144 3271 -1 1938 263 105 41 chr12 30262592 30263599 -113522856 - L2 LINE L2 0 3313 2256 2247 123 8 19 chr12 30264794 30265159 -113521296 + MER46B DNA MER2_type 1 236 0 286 317 121 18 chr12 30265353 30265577 -113520878 - MIR SINE MIR -1 261 15 449 290 86 108 chr12 30266351 30266641 -113519814 - L1MC/D LINE L1 -2002 5806 5530 2366 103 0 0 chr12 30266641 30266953 -113519502 - AluSx SINE Alu 0 312 1 449 290 86 108 chr12 30266953 30267173 -113519282 - L1MC/D LINE L1 -2278 5530 5307 517 315 36 12 chr12 30267289 30267454 -113519001 + MIR SINE MIR 5 173 -89 1784 159 3 20 chr12 30267582 30267883 -113518572 + AluJb SINE Alu 1 296 -16 239 189 261 72 chr12 30268329 30268440 -113518015 + MIR SINE MIR 76 207 -55 382 119 10 10 chr12 30268906 30269100 -113517355 + AluJb SINE Alu 1 291 -11 2047 52 0 0 chr12 30270475 30270726 -113515729 - L1PA4 LINE L1 -5875 271 21 * 41522 38 4 2 chr12 30270724 30276570 -113509885 + L1PA4 LINE L1 296 6155 0 2219 110 0 0 chr12 30277719 30278019 -113508436 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 30278627 30278650 -113507805 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 47 0 chr12 30278665 30278708 -113507747 - L2 LINE L2 0 3313 3269 203 302 19 0 chr12 30280400 30280453 -113506002 - L2 LINE L2 -6 3307 3254 496 264 42 61 chr12 30280473 30280685 -113505770 - MIR SINE MIR -6 256 49 22 35 0 0 chr12 30283252 30283281 -113503174 + AT_rich Low_complexity Low_complexity 1 29 0 2237 97 0 10 chr12 30285556 30285855 -113500600 + AluSc SINE Alu 3 298 -11 22 0 0 0 chr12 30285929 30285951 -113500504 + AT_rich Low_complexity Low_complexity 1 22 0 1460 217 10 13 chr12 30286026 30286325 -113500130 + AluJo SINE Alu 2 299 -13 21 0 0 0 chr12 30288750 30288771 -113497684 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr12 30288998 30289039 -113497416 + (TC)n Simple_repeat Simple_repeat 2 42 0 1776 140 3 20 chr12 30289042 30289335 -113497120 - AluJo SINE Alu -24 288 1 1959 124 14 7 chr12 30289685 30289976 -113496479 - AluSx SINE Alu -19 293 1 352 357 48 29 chr12 30290371 30290581 -113495874 - MIR SINE MIR -44 218 5 1200 263 112 17 chr12 30291719 30292129 -113494326 - L1MC4a LINE L1 -1924 5884 5436 499 209 0 0 chr12 30293294 30293385 -113493070 + AluJ/FLAM SINE Alu 1 91 -221 1472 163 0 4 chr12 30293389 30293629 -113492826 + AluJo SINE Alu 64 302 -10 2103 126 3 7 chr12 30293843 30294152 -113492303 - AluJb SINE Alu -4 308 1 484 290 21 7 chr12 30294564 30294709 -113491746 - MIR SINE MIR -98 164 18 253 263 0 18 chr12 30295227 30295284 -113491171 + L2 LINE L2 3143 3198 -74 7874 199 116 30 chr12 30297911 30300045 -113486410 - Cheshire DNA MER1_type -2 2418 83 2298 101 0 3 chr12 30300045 30300353 -113486102 + AluSx SINE Alu 3 309 -3 7874 199 116 30 chr12 30300353 30300444 -113486011 - Cheshire DNA MER1_type -2337 83 1 901 165 96 74 chr12 30301077 30301307 -113485148 - MER46A DNA MER2_type 0 236 2 23 33 0 0 chr12 30301456 30301486 -113484969 + AT_rich Low_complexity Low_complexity 1 30 0 2225 212 82 25 chr12 30301640 30302211 -113484244 + MER20B DNA MER1_type 42 645 -138 21 0 0 0 chr12 30302912 30302933 -113483522 + AT_rich Low_complexity Low_complexity 1 21 0 388 240 29 29 chr12 30303034 30303138 -113483317 + L2 LINE L2 3210 3313 0 2073 100 10 3 chr12 30303690 30303979 -113482476 - AluSq SINE Alu -17 296 6 2075 120 3 10 chr12 30304631 30304932 -113481523 - AluSx SINE Alu -13 299 1 1510 168 87 19 chr12 30306042 30306352 -113480103 + L1MC1 LINE L1 5990 6320 -13 671 306 123 13 chr12 30307604 30308061 -113478394 + L1ME4a LINE L1 5315 5821 -1987 406 183 39 44 chr12 30308100 30308280 -113478175 + (TA)n Simple_repeat Simple_repeat 2 180 0 331 193 28 150 chr12 30308330 30308476 -113477979 + L1ME4a LINE L1 5931 6045 -76 1052 111 115 69 chr12 30308476 30308627 -113477828 + MER30 DNA MER1_type 4 169 -61 2007 124 3 17 chr12 30308627 30308926 -113477529 + AluSx SINE Alu 1 295 -17 1052 111 115 69 chr12 30308926 30308991 -113477464 + MER30 DNA MER1_type 169 230 0 331 193 28 150 chr12 30308991 30309057 -113477398 + L1ME4a LINE L1 6045 6117 -4 1723 114 25 85 chr12 30309956 30310272 -113476183 + AluSq SINE Alu 1 297 -16 306 330 88 11 chr12 30310684 30310866 -113475589 - MIR SINE MIR -46 216 21 41 66 0 0 chr12 30311029 30311105 -113475350 + AT_rich Low_complexity Low_complexity 1 76 0 26 30 0 0 chr12 30311215 30311248 -113475207 + AT_rich Low_complexity Low_complexity 1 33 0 5341 126 22 14 chr12 30311935 30313284 -113473171 + L1PA16 LINE L1 4807 6160 -6 212 220 9 64 chr12 30313302 30313411 -113473044 + A-rich Low_complexity Low_complexity 5 107 0 182 402 73 11 chr12 30316332 30316511 -113469944 - MIR SINE MIR -14 248 59 309 171 0 71 chr12 30316994 30317064 -113469391 - MIR SINE MIR -69 139 75 * 447 247 65 58 chr12 30317055 30317209 -113469246 - MIR SINE MIR -51 211 57 21 57 0 0 chr12 30318294 30318329 -113468126 + AT_rich Low_complexity Low_complexity 1 35 0 517 221 97 32 chr12 30318780 30318934 -113467521 - MIR SINE MIR -32 230 67 23 86 0 0 chr12 30319598 30319656 -113466799 + AT_rich Low_complexity Low_complexity 1 58 0 2075 123 0 19 chr12 30319720 30320062 -113466393 + AluSx SINE Alu 1 312 0 195 42 0 0 chr12 30320095 30320119 -113466336 + (GAA)n Simple_repeat Simple_repeat 3 26 0 364 283 176 61 chr12 30320159 30320317 -113466138 + L1ME4a LINE L1 5640 5778 -343 1933 137 0 20 chr12 30320317 30320623 -113465832 - AluJb SINE Alu -12 300 1 364 283 176 61 chr12 30320623 30320793 -113465662 + L1ME4a LINE L1 5778 6006 -115 706 326 166 37 chr12 30321635 30323016 -113463439 + L2 LINE L2 1630 3223 -49 250 245 196 0 chr12 30323124 30323226 -113463229 + L2 LINE L2 3192 3313 0 592 265 43 57 chr12 30323773 30323984 -113462471 - MIR SINE MIR -32 230 23 1987 133 26 48 chr12 30324970 30325322 -113461133 + MER2 DNA MER2_type 1 344 0 273 333 68 23 chr12 30325409 30325541 -113460914 - L3 LINE CR1 -1074 503 366 1828 200 71 12 chr12 30325690 30326100 -113460355 + MLT1C LTR MaLR 34 467 0 224 222 96 96 chr12 30326457 30326592 -113459863 + MIR SINE MIR 71 205 -57 888 225 53 0 chr12 30327249 30327436 -113459019 - MIR SINE MIR 0 262 66 21 0 0 0 chr12 30327716 30327737 -113458718 + AT_rich Low_complexity Low_complexity 1 21 0 361 287 64 38 chr12 30329617 30329774 -113456681 - MIR SINE MIR -42 220 60 913 217 49 15 chr12 30329995 30330198 -113456257 + MIR SINE MIR 3 212 -50 1100 78 0 0 chr12 30330466 30330608 -113455847 - HERV9 LTR ERV1 -6416 1983 1842 15449 96 15 7 chr12 30330784 30333246 -113453209 - HERV9 LTR ERV1 -1935 503 2 332 204 31 20 chr12 30333249 30333347 -113453108 - LTR30 LTR ERV1 -80 642 544 4629 124 66 75 chr12 30333347 30334470 -113451985 - pTR5 LTR ERV1 -413 2025 741 1766 142 45 7 chr12 30334677 30334839 -113451616 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30334839 30334886 -113451569 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 142 45 7 chr12 30334886 30335012 -113451443 - AluSx SINE Alu -189 123 3 1967 129 10 20 chr12 30335344 30335639 -113450816 - AluSx SINE Alu -20 292 1 335 289 70 7 chr12 30335659 30335801 -113450654 + Tigger8 DNA MER2_type 83 233 -433 286 282 26 122 chr12 30335855 30336011 -113450444 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30336720 30336742 -113449713 + AT_rich Low_complexity Low_complexity 1 22 0 14388 157 62 34 chr12 30336946 30340579 -113445876 - MER109 Unknown Unknown 0 2432 578 2369 86 0 0 chr12 30340579 30340869 -113445586 + AluSc SINE Alu 1 290 -19 14388 157 62 34 chr12 30340869 30341464 -113444991 - MER109 Unknown Unknown -1854 578 1 305 241 69 9 chr12 30341568 30341684 -113444771 - MER109 Unknown Unknown -1831 601 479 383 228 70 0 chr12 30343149 30343263 -113443192 + MLT1F1 LTR MaLR 156 277 -290 522 298 68 10 chr12 30343265 30343557 -113442898 - HAL1 LINE L1 -971 1536 1228 2290 111 0 7 chr12 30343710 30344016 -113442439 + AluSq SINE Alu 1 304 -9 448 270 55 59 chr12 30344158 30344395 -113442060 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30344656 30344852 -113441603 + MIR SINE MIR 2 221 -41 388 233 130 13 chr12 30345179 30345445 -113441010 - L1MB8 LINE L1 -5 6161 5841 2142 102 3 20 chr12 30345454 30345759 -113440696 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 30345886 30346128 -113440327 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30346689 30346927 -113439528 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30346967 30347028 -113439427 + MER5B DNA MER1_type 8 65 -113 382 284 31 21 chr12 30347069 30347262 -113439193 - L1ME3 LINE L1 -519 5651 5461 2421 90 0 0 chr12 30347348 30347658 -113438797 - AluY SINE Alu -1 310 1 329 274 204 22 chr12 30347755 30348025 -113438430 + Tigger8 DNA MER2_type 206 524 -142 188 200 20 40 chr12 30348376 30348426 -113438029 + L2 LINE L2 3265 3313 0 2132 94 63 0 chr12 30348551 30348838 -113437617 + AluSg SINE Alu 1 305 -5 3170 120 93 9 chr12 30349132 30349713 -113436742 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30350112 30350333 -113436122 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30350384 30350553 -113435902 + GA-rich Low_complexity Low_complexity 3 166 0 277 213 40 0 chr12 30350842 30350917 -113435538 + MER116 DNA Mariner 1 78 -2 2220 119 0 3 chr12 30352403 30352714 -113433741 + AluSg SINE Alu 1 310 0 265 229 0 0 chr12 30352724 30352785 -113433670 - MER116 DNA Mariner -16 64 4 41811 39 2 4 chr12 30353973 30360135 -113426320 - L1PA3 LINE L1 -1 6154 2 1249 231 7 50 chr12 30360523 30360822 -113425633 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30361162 30361197 -113425258 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30361324 30361353 -113425102 + (CA)n Simple_repeat Simple_repeat 2 30 0 2104 97 17 21 chr12 30361683 30361973 -113424482 - AluSx SINE Alu -8 304 16 264 258 148 62 chr12 30362043 30362299 -113424156 - L1ME LINE L1 -315 5806 5529 280 288 29 14 chr12 30362303 30362442 -113424013 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30362506 30362530 -113423925 + AT_rich Low_complexity Low_complexity 1 24 0 293 261 14 0 chr12 30363072 30363141 -113423314 - MER5B DNA MER1_type -1 177 108 3929 197 85 56 chr12 30363150 30364864 -113421591 + L1MD1 LINE L1 4295 6072 -170 2046 92 7 35 chr12 30364864 30365147 -113421308 + AluSx SINE Alu 32 306 -6 3929 197 85 56 chr12 30365147 30365318 -113421137 + L1MD1 LINE L1 6072 6236 -6 360 300 58 0 chr12 30365353 30365423 -113421032 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30365423 30365473 -113420982 + (TG)n Simple_repeat Simple_repeat 2 51 0 360 300 58 0 chr12 30365473 30365522 -113420933 - MER5B DNA MER1_type -132 46 1 409 284 42 0 chr12 30365788 30365883 -113420572 - MIR SINE MIR -103 159 61 1412 216 13 23 chr12 30366514 30366820 -113419635 - AluJo SINE Alu -9 303 1 2326 83 0 23 chr12 30366956 30367256 -113419199 - AluY SINE Alu -18 293 1 223 139 0 0 chr12 30368060 30368096 -113418359 - MIR SINE MIR -109 153 118 2914 3 3 0 chr12 30368161 30368478 -113417977 - AluYb8 SINE Alu 0 318 1 463 290 115 37 chr12 30369741 30369958 -113416497 - MIR SINE MIR 0 262 29 554 248 102 6 chr12 30370468 30370625 -113415830 - MIR SINE MIR 0 262 91 1549 192 0 54 chr12 30370667 30370980 -113415475 - AluJb SINE Alu -16 296 1 501 261 12 118 chr12 30372656 30372901 -113413554 + MIR SINE MIR 31 249 -13 951 174 152 112 chr12 30373155 30373602 -113412853 + MER31B LTR ERV1 2 466 0 2249 102 3 7 chr12 30373768 30374061 -113412394 + AluSx SINE Alu 1 292 -20 3386 148 41 58 chr12 30374508 30375243 -113411212 + MER50 LTR ERV1 1 722 -12 321 285 192 0 chr12 30375783 30375913 -113410542 + MIR3 SINE MIR 45 199 -9 343 188 78 0 chr12 30376365 30376429 -113410026 - L2 LINE L2 -42 3271 3203 183 195 322 0 chr12 30376620 30376707 -113409748 - MIR SINE MIR -10 252 138 1859 151 11 0 chr12 30376728 30377035 -113409420 + AluJb SINE Alu 1 310 0 546 288 53 60 chr12 30377058 30377546 -113408909 - L1MCc LINE L1 -4818 2304 1814 2294 88 0 10 chr12 30377546 30377842 -113408613 - AluY SINE Alu -18 293 1 546 288 53 60 chr12 30377842 30377906 -113408549 - L1MCc LINE L1 -5308 1814 1751 213 39 0 0 chr12 30377906 30377932 -113408523 + (TCC)n Simple_repeat Simple_repeat 2 27 0 546 288 53 60 chr12 30377932 30378289 -113408166 - L1MCc LINE L1 -5371 1751 1179 27 49 0 0 chr12 30380120 30380161 -113406294 + AT_rich Low_complexity Low_complexity 1 41 0 696 326 47 61 chr12 30380747 30381050 -113405405 + L2 LINE L2 2815 3110 -203 2135 117 7 7 chr12 30381050 30381377 -113405078 - AluSq SINE Alu 0 313 1 696 326 47 61 chr12 30381377 30381579 -113404876 + L2 LINE L2 3110 3313 0 2402 94 0 0 chr12 30382210 30382509 -113403946 - AluSx SINE Alu -13 299 1 309 252 68 29 chr12 30383033 30383136 -113403319 - MIR SINE MIR -151 111 5 191 345 128 28 chr12 30383205 30383634 -113402821 - L2 LINE L2 -931 2383 1912 291 125 0 0 chr12 30383828 30383876 -113402579 - Alu SINE Alu -3 299 252 * 1264 192 98 31 chr12 30383862 30384198 -113402257 - MLT1C LTR MaLR -108 359 1 1092 155 0 0 chr12 30384610 30384771 -113401684 - AluSg/x SINE Alu -14 298 138 222 37 0 0 chr12 30384883 30384910 -113401545 + (CA)n Simple_repeat Simple_repeat 1 27 0 1848 118 44 7 chr12 30384960 30385232 -113401223 - AluSg1 SINE Alu -14 295 14 24 53 0 0 chr12 30385665 30385703 -113400752 + AT_rich Low_complexity Low_complexity 1 38 0 1683 163 14 10 chr12 30385703 30385992 -113400463 - AluJo SINE Alu -22 290 1 193 303 23 136 chr12 30386040 30386172 -113400283 - MIR3 SINE MIR -86 122 6 300 27 0 0 chr12 30386187 30386224 -113400231 + (CA)n Simple_repeat Simple_repeat 2 38 0 230 368 0 0 chr12 30386839 30386926 -113399529 + L2 LINE L2 2581 2667 -647 631 218 0 8 chr12 30387873 30387997 -113398458 - FLAM_C SINE Alu -20 123 1 186 133 0 0 chr12 30388206 30388236 -113398219 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 200 284 40 27 chr12 30388979 30389053 -113397402 + MER5B DNA MER1_type 104 178 0 2583 120 31 14 chr12 30390924 30391341 -113395114 + MSTA LTR MaLR 1 424 -4 400 333 147 9 chr12 30391347 30391680 -113394775 + L2 LINE L2 2915 3293 -20 2572 51 0 3 chr12 30391888 30392199 -113394256 - AluY SINE Alu -1 310 1 2359 168 36 2 chr12 30392988 30393399 -113393056 - MSTB LTR MaLR 0 426 2 197 322 28 63 chr12 30393685 30393828 -113392627 + MIR SINE MIR 84 221 -41 958 179 70 30 chr12 30394001 30394202 -113392253 + MER3 DNA MER1_type 1 209 0 3248 107 14 24 chr12 30394886 30395380 -113391075 - LTR22B LTR ERVK -3 489 1 257 286 97 26 chr12 30395460 30395614 -113390841 + L2 LINE L2 1931 2095 -1219 520 264 181 0 chr12 30395636 30395780 -113390675 + MER91B DNA MER1_type 19 188 -2 227 350 157 43 chr12 30395809 30396288 -113390167 + L2 LINE L2 2123 2711 -603 2556 48 0 3 chr12 30396288 30396599 -113389856 - AluY SINE Alu -1 310 1 227 350 157 43 chr12 30396599 30396833 -113389622 + L2 LINE L2 2711 2917 -397 288 359 78 0 chr12 30396886 30396989 -113389466 + L2 LINE L2 3127 3237 -35 2096 108 0 7 chr12 30397390 30397685 -113388770 + AluSc SINE Alu 1 293 -16 27 49 0 0 chr12 30398217 30398258 -113388197 + AT_rich Low_complexity Low_complexity 1 41 0 549 190 120 25 chr12 30398355 30398513 -113387942 + MIR SINE MIR 90 262 0 1605 209 19 14 chr12 30398976 30399396 -113387059 - L1PB4 LINE L1 -825 5321 4900 * 4801 127 31 11 chr12 30399377 30400212 -113386243 + L1PB4 LINE L1 5304 6155 -1 1480 188 82 28 chr12 30401041 30401356 -113385099 + LTR52 LTR ERVL 9 350 -71 351 0 0 0 chr12 30401356 30401395 -113385060 + (TG)n Simple_repeat Simple_repeat 1 39 0 1480 188 82 28 chr12 30401395 30401468 -113384987 + LTR52 LTR ERVL 350 418 -3 5588 130 10 2 chr12 30401942 30402843 -113383612 + L1MC1 LINE L1 5426 6333 0 21 36 0 0 chr12 30403252 30403280 -113383175 + AT_rich Low_complexity Low_complexity 1 28 0 217 283 0 0 chr12 30403459 30403505 -113382950 + L2 LINE L2 3251 3296 -17 2054 108 3 3 chr12 30405154 30405449 -113381006 + AluY SINE Alu 1 295 -16 24 0 0 0 chr12 30405449 30405473 -113380982 + AT_rich Low_complexity Low_complexity 1 24 0 1534 274 23 57 chr12 30405507 30406108 -113380347 + L2 LINE L2 2075 2655 -659 3862 196 88 63 chr12 30406203 30406798 -113379657 + L1MC3 LINE L1 6545 7124 -661 253 246 0 0 chr12 30406798 30406855 -113379600 + MLT1F1 LTR MaLR 68 124 -443 3862 196 88 63 chr12 30406855 30407127 -113379328 + L1MC3 LINE L1 7124 7388 -397 233 89 22 0 chr12 30407127 30407172 -113379283 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3862 196 88 63 chr12 30407172 30407438 -113379017 + L1MC3 LINE L1 7388 7765 -20 21 0 0 0 chr12 30407716 30407737 -113378718 + AT_rich Low_complexity Low_complexity 1 21 0 866 192 4 96 chr12 30407925 30408154 -113378301 + MER58A DNA MER1_type 1 208 -16 23 0 0 0 chr12 30408480 30408503 -113377952 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 30408544 30408579 -113377876 + AT_rich Low_complexity Low_complexity 1 35 0 2481 35 0 0 chr12 30408829 30409169 -113377286 + AluY SINE Alu 1 340 0 1104 159 94 14 chr12 30409622 30409898 -113376557 + MER33 DNA MER1_type 5 302 -22 345 271 90 14 chr12 30410056 30410200 -113376255 - MER20 DNA MER1_type -34 185 31 189 322 0 0 chr12 30410229 30410288 -113376167 + MIR3 SINE MIR 144 202 -6 21 57 0 0 chr12 30410324 30410359 -113376096 + AT_rich Low_complexity Low_complexity 1 35 0 255 335 99 7 chr12 30410845 30410997 -113375458 - MIR SINE MIR -57 205 40 242 288 136 60 chr12 30411003 30411180 -113375275 + L3b LINE CR1 1279 1472 -111 2430 96 0 6 chr12 30411180 30411494 -113374961 + AluSx SINE Alu 1 312 0 284 174 8 174 chr12 30411803 30411935 -113374520 - L1MB5 LINE L1 -8 6166 6057 853 315 129 40 chr12 30412302 30413071 -113373384 - L2 LINE L2 -769 2545 1709 1609 76 3 170 chr12 30413293 30413635 -113372820 + LTR12 LTR ERV1 1 285 -429 276 211 14 0 chr12 30413636 30413707 -113372748 + LTR30 LTR ERV1 553 624 -98 714 160 25 0 chr12 30413707 30413826 -113372629 + LTR12 LTR ERV1 359 480 -234 212 86 29 0 chr12 30413954 30413989 -113372466 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 446 358 66 8 chr12 30414067 30414430 -113372025 - L2 LINE L2 -1605 1709 1326 467 17 17 0 chr12 30415135 30415195 -113371260 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 253 310 93 8 chr12 30416394 30416523 -113369932 + MIR SINE MIR 111 250 -12 2101 160 0 69 chr12 30416676 30417095 -113369360 + MLT1B LTR MaLR 1 390 0 1526 167 3 70 chr12 30417301 30417601 -113368854 - AluJb SINE Alu -28 284 5 185 156 0 0 chr12 30418154 30418186 -113368269 + MIR SINE MIR 130 161 -101 240 250 0 0 chr12 30419987 30420039 -113366416 + LTR30 LTR ERV1 1 52 -670 1671 108 150 163 chr12 30420039 30420750 -113365705 + LTR12 LTR ERV1 53 581 -133 * 10064 109 9 24 chr12 30420725 30421197 -113365258 + HERV9 LTR ERV1 55 533 -7866 2245 92 54 0 chr12 30421197 30421492 -113364963 + AluY SINE Alu 1 311 0 10064 109 9 24 chr12 30421492 30423520 -113362935 + HERV9 LTR ERV1 533 2596 -5803 1792 187 48 30 chr12 30423656 30424521 -113361934 - SVA Other Other -518 868 432 2136 120 108 0 chr12 30424531 30424882 -113361573 + HERV9 LTR ERV1 2584 2972 -5427 1336 95 0 0 chr12 30424881 30425070 -113361385 + HERV9 LTR ERV1 4756 4944 -3455 * 1874 95 34 83 chr12 30425071 30425980 -113360475 + HERV17 LTR ERV1 704 1740 -5156 * 5296 105 1 0 chr12 30425978 30426751 -113359704 + HERV17 LTR ERV1 7626 8399 0 254 211 0 0 chr12 30426751 30426803 -113359652 + LTR30 LTR ERV1 1 52 -670 1725 96 167 191 chr12 30426803 30427395 -113359060 + LTR12 LTR ERV1 57 581 -133 383 303 56 19 chr12 30429757 30429919 -113356536 - MIR SINE MIR -42 220 53 245 238 0 29 chr12 30430811 30430916 -113355539 + L1M4 LINE L1 5118 5219 -927 477 295 107 45 chr12 30431771 30431886 -113354569 - MIR SINE MIR 0 262 156 399 160 40 0 chr12 30431886 30431961 -113354494 + MER116 DNA Mariner 1 78 -2 477 295 107 45 chr12 30431961 30432069 -113354386 - MIR SINE MIR -106 156 25 243 224 0 0 chr12 30432337 30432386 -113354069 - MIR3 SINE MIR -7 201 153 483 199 44 0 chr12 30432631 30432753 -113353702 - MIR SINE MIR -62 146 43 * 484 338 98 61 chr12 30432745 30433041 -113353414 + L2 LINE L2 2963 3269 -3 2538 246 75 33 chr12 30433609 30434795 -113351660 + L1ME3A LINE L1 4923 6170 0 1812 157 66 76 chr12 30434965 30435359 -113351096 + MLT1B LTR MaLR 1 390 0 222 313 15 0 chr12 30435553 30435620 -113350835 - L2 LINE L2 -553 2761 2694 2072 100 65 0 chr12 30436381 30436660 -113349795 - AluY SINE Alu -14 297 1 343 223 78 58 chr12 30436866 30436969 -113349486 + L2 LINE L2 3168 3272 0 299 345 101 0 chr12 30436990 30437109 -113349346 + MIR3 SINE MIR 30 160 -48 366 23 0 0 chr12 30438767 30438810 -113347645 + (TA)n Simple_repeat Simple_repeat 2 44 0 324 180 56 67 chr12 30439130 30439219 -113347236 - MER5A DNA MER1_type -63 126 39 30 0 0 0 chr12 30439579 30439609 -113346846 + AT_rich Low_complexity Low_complexity 1 30 0 1190 140 43 100 chr12 30439650 30439950 -113346505 - L1MA7 LINE L1 -122 6169 5887 1092 197 90 72 chr12 30440082 30440417 -113346038 - MER58B DNA MER1_type 0 341 1 2194 69 33 0 chr12 30441192 30441514 -113344941 + AluY SINE Alu 1 331 0 540 328 114 39 chr12 30442076 30442868 -113343587 + L2 LINE L2 2453 3312 -1 277 355 32 11 chr12 30444106 30444199 -113342256 - MIR SINE MIR -102 160 66 764 195 75 25 chr12 30444303 30444462 -113341993 - MER45A DNA AcHobo -11 167 1 24 32 0 0 chr12 30446821 30446852 -113339603 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr12 30446967 30446987 -113339468 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 279 303 38 60 chr12 30448112 30448379 -113338076 + L1ME LINE L1 5478 5738 -383 2271 173 71 33 chr12 30448481 30448931 -113337524 - MLT1C LTR MaLR 0 467 1 1011 239 68 66 chr12 30448952 30449389 -113337066 + MLT1C LTR MaLR 1 438 -29 2007 157 48 8 chr12 30449389 30449804 -113336651 + MER61D LTR ERV1 1 501 0 819 253 75 26 chr12 30449865 30450377 -113336078 + MER61D-int LTR ERV1 68 542 -2546 746 174 147 94 chr12 30450472 30450770 -113335685 + HUERS-P3b LTR ERV1 290 884 -4819 11589 170 24 52 chr12 30450776 30454639 -113331816 + HUERS-P3b LTR ERV1 609 6062 -481 2428 90 0 0 chr12 30454639 30454940 -113331515 - AluY SINE Alu -10 301 1 11589 170 24 52 chr12 30454940 30455115 -113331340 + HUERS-P3b LTR ERV1 6062 6240 -303 3234 72 23 20 chr12 30455115 30455557 -113330898 + LTR7 LTR ERV1 1 443 -7 18619 106 20 37 chr12 30455565 30458610 -113327845 + HERVH LTR ERV1 1 2992 -4721 6074 92 6 2 chr12 30458596 30459447 -113327008 + HERVH LTR ERV1 3140 3993 -3720 * 4472 127 0 21 chr12 30459450 30459986 -113326469 + HERVH LTR ERV1 4489 5010 -2703 2302 92 3 0 chr12 30459986 30460281 -113326174 + AluY SINE Alu 1 296 -15 4472 127 0 21 chr12 30460281 30460419 -113326036 + HERVH LTR ERV1 5010 5149 -2564 2623 101 52 21 chr12 30460436 30460860 -113325595 + HERVH LTR ERV1 7277 7713 0 3304 57 23 18 chr12 30460860 30461297 -113325158 + LTR7 LTR ERV1 1 439 -11 3473 146 16 20 chr12 30461301 30462084 -113324371 + MER61D-int LTR ERV1 3500 6995 -1 1928 167 45 7 chr12 30462085 30462484 -113323971 + MER61D LTR ERV1 1 501 0 2216 101 10 3 chr12 30462859 30463166 -113323289 + AluSx SINE Alu 1 309 -3 2158 128 0 10 chr12 30463429 30463735 -113322720 - AluSg SINE Alu -7 303 1 1558 221 119 70 chr12 30463918 30464537 -113321918 - MLT1E1 LTR MaLR -4 650 1 2393 43 0 4 chr12 30465132 30465410 -113321045 + AluY SINE Alu 28 304 -7 30 0 0 0 chr12 30465602 30465632 -113320823 + AT_rich Low_complexity Low_complexity 1 30 0 1822 179 77 19 chr12 30465637 30466001 -113320454 + L1MC1 LINE L1 53 437 -5989 2980 146 51 11 chr12 30466011 30466540 -113319915 + L1MC1 LINE L1 1691 2240 -4186 2709 221 98 39 chr12 30466560 30467323 -113319132 - MER21B LTR ERV1 -11 852 45 358 268 0 0 chr12 30467328 30467399 -113319056 - MER21B LTR ERV1 -774 89 19 356 214 36 12 chr12 30467502 30467586 -113318869 - MER21B LTR ERV1 -777 86 1 11740 215 37 17 chr12 30467587 30468291 -113318164 + L1MC1 LINE L1 2249 2937 -3676 2674 32 3 0 chr12 30468291 30468599 -113317856 - AluY SINE Alu -2 309 1 11740 215 37 17 chr12 30468599 30470820 -113315635 + L1MC1 LINE L1 2937 5285 -1328 261 0 0 0 chr12 30470820 30470849 -113315606 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 11740 215 37 17 chr12 30470849 30472164 -113314291 + L1MC1 LINE L1 5285 6572 -41 551 144 112 32 chr12 30472159 30472284 -113314171 + L1MC1 LINE L1 6199 6333 0 * 1532 220 11 5 chr12 30472760 30473128 -113313327 - Zaphod DNA AcHobo -65 3966 3597 * 2831 229 65 56 chr12 30473106 30473347 -113313108 - Zaphod DNA AcHobo -3023 1008 771 1650 178 0 20 chr12 30473347 30473645 -113312810 - AluJo SINE Alu -20 292 1 2831 229 65 56 chr12 30473645 30474392 -113312063 - Zaphod DNA AcHobo -3260 771 11 1571 186 7 14 chr12 30474640 30474930 -113311525 - AluJo SINE Alu -16 296 9 567 84 0 36 chr12 30475043 30475126 -113311329 - MADE1 DNA Mariner 0 80 1 259 264 157 90 chr12 30475992 30476348 -113310107 - L2 LINE L2 0 3313 2934 2344 116 52 17 chr12 30476626 30476988 -113309467 - THE1C LTR MaLR 0 375 1 210 336 22 22 chr12 30478018 30478155 -113308300 + MIR SINE MIR 109 245 -17 1929 136 38 95 chr12 30478349 30478718 -113307737 - MER7A DNA MER2_type 0 346 1 451 248 36 51 chr12 30479118 30479203 -113307252 - MIR SINE MIR -21 241 157 4709 75 68 21 chr12 30479203 30479831 -113306624 + PABL_A LTR ERV1 1 658 -2 451 248 36 51 chr12 30479831 30479882 -113306573 - MIR SINE MIR -105 157 107 3012 97 335 4 chr12 30480658 30481174 -113305281 + LTR12 LTR ERV1 1 687 -1 2241 67 43 10 chr12 30481454 30481754 -113304701 - AluY SINE Alu -1 310 1 204 308 94 44 chr12 30481982 30482141 -113304314 + L2 LINE L2 2808 2974 -340 802 219 128 41 chr12 30482177 30482520 -113303935 + MER96B DNA MER1_type? 24 396 -21 12063 202 104 12 chr12 30482546 30487196 -113299259 + L1M2 LINE L1 1 5123 -1725 6897 58 5 1 chr12 30487196 30488208 -113298247 + L1PA6 LINE L1 5122 6136 -18 333 88 44 22 chr12 30488215 30488306 -113298149 + (TA)n Simple_repeat Simple_repeat 2 94 0 301 271 98 23 chr12 30488487 30488620 -113297835 - L1ME4a LINE L1 -2 6119 5977 2135 126 3 0 chr12 30489693 30489986 -113296469 - AluSx SINE Alu -18 294 1 547 237 23 8 chr12 30489986 30490117 -113296338 - MIR SINE MIR -1 261 129 210 128 0 0 chr12 30490216 30490255 -113296200 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 382 62 24 chr12 30491941 30492279 -113294176 - L2 LINE L2 -338 2976 2626 483 272 105 40 chr12 30492360 30492588 -113293867 + MIR SINE MIR 19 261 -1 27 73 0 0 chr12 30493138 30493193 -113293262 + AT_rich Low_complexity Low_complexity 1 55 0 5535 167 30 3 chr12 30493665 30494807 -113291648 + L1MC2 LINE L1 5024 6193 -151 672 311 70 4 chr12 30495223 30495451 -113291004 + MIR SINE MIR 13 255 -7 2266 188 12 2 chr12 30495497 30495911 -113290544 - MER44D DNA MER2_type -77 528 56 1147 238 99 60 chr12 30495915 30496347 -113290108 - MSTB2 LTR MaLR -8 449 1 258 276 0 0 chr12 30496350 30496408 -113290047 - MER44D DNA MER2_type -646 59 2 2078 62 0 8 chr12 30496620 30496907 -113289548 - AluY SINE Alu 0 313 29 833 254 125 30 chr12 30497000 30497303 -113289152 - MER74A LTR ERVL -2 556 225 36 40 0 0 chr12 30497422 30497472 -113288983 + AT_rich Low_complexity Low_complexity 1 50 0 23274 86 9 6 chr12 30497598 30503535 -113282920 - L1PA6 LINE L1 -7 6147 11 598 157 25 0 chr12 30503764 30503885 -113282570 - L1MB3 LINE L1 -7 6176 6053 2241 162 30 39 chr12 30503893 30504460 -113281995 - L1MA9 LINE L1 -10 6302 5677 * 5489 227 41 43 chr12 30504457 30504837 -113281618 - L1 LINE L1 -840 6008 5629 1305 69 0 0 chr12 30504837 30505010 -113281445 + (TTTC)n Simple_repeat Simple_repeat 1 173 0 2009 127 4 0 chr12 30505010 30505286 -113281169 - AluSp SINE Alu -36 277 1 5489 227 41 43 chr12 30505286 30507052 -113279403 - L1 LINE L1 -1217 5631 3747 2254 290 76 13 chr12 30507056 30508156 -113278299 - L1 LINE L1 -4170 2679 1510 511 321 32 74 chr12 30509340 30509745 -113276710 - L1 LINE L1 -5749 1030 643 * 1276 173 25 0 chr12 30509742 30509979 -113276476 - L1MB4 LINE L1 -118 6062 5820 5693 180 10 7 chr12 30510156 30511272 -113275183 - L1MC1 LINE L1 -27 6306 5184 1044 176 58 0 chr12 30511269 30511474 -113274981 - L1MB4 LINE L1 -345 5838 5622 * 1791 182 3 3 chr12 30512613 30512909 -113273546 + AluJo SINE Alu 1 296 -16 3246 198 94 18 chr12 30513082 30513860 -113272595 - Charlie6 DNA MER1_type -1056 2444 1608 5574 146 8 30 chr12 30513860 30514215 -113272240 - L1PA16 LINE L1 -22 6144 5783 396 0 0 0 chr12 30514215 30514259 -113272196 + (CA)n Simple_repeat Simple_repeat 2 45 0 5574 146 8 30 chr12 30514259 30514727 -113271728 - L1PA16 LINE L1 -383 5783 5345 2832 94 14 35 chr12 30514727 30515161 -113271294 - L1PA11 LINE L1 0 6174 5750 5574 146 8 30 chr12 30515161 30515584 -113270871 - L1PA16 LINE L1 -821 5345 4914 1485 228 71 32 chr12 30515585 30516020 -113270435 - Charlie6 DNA MER1_type -1877 1623 1172 3049 263 40 21 chr12 30516033 30517850 -113268605 - L1ME1 LINE L1 -117 6049 4199 345 333 33 7 chr12 30518201 30518354 -113268101 + MIR SINE MIR 23 179 -83 207 0 0 0 chr12 30518354 30518377 -113268078 + (TTA)n Simple_repeat Simple_repeat 3 25 0 422 39 0 0 chr12 30518377 30518429 -113268026 - L1PA7 LINE L1 -18 6136 6085 3366 84 4 13 chr12 30518529 30519004 -113267451 - L1PA7 LINE L1 -1 6153 5683 185 333 0 0 chr12 30519004 30519070 -113267385 + MIR SINE MIR 184 249 -13 326 311 99 56 chr12 30519108 30519481 -113266974 - MLT1K LTR MaLR -4 584 196 2036 127 0 7 chr12 30519812 30520221 -113266234 - AluSx SINE Alu 0 407 1 324 70 0 0 chr12 30520277 30520320 -113266135 + (CATA)n Simple_repeat Simple_repeat 2 44 0 245 29 29 0 chr12 30520464 30520498 -113265957 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 30520498 30520525 -113265930 + (CA)n Simple_repeat Simple_repeat 1 27 0 405 310 19 60 chr12 30520967 30521183 -113265272 + L2 LINE L2 2293 2499 -815 2382 84 3 0 chr12 30521276 30521586 -113264869 - AluSp SINE Alu -2 311 1 398 89 0 0 chr12 30521625 30521681 -113264774 + MADE1 DNA Mariner 25 80 0 324 261 81 9 chr12 30522239 30522350 -113264105 - MLT1J2 LTR MaLR 0 450 332 348 178 27 0 chr12 30522507 30522580 -113263875 + L1ME2 LINE L1 6088 6162 -2 1499 219 104 39 chr12 30522971 30523459 -113262996 - MLT2B1 LTR ERVL 0 520 1 720 212 13 13 chr12 30525523 30525674 -113260781 - MER97a DNA MER1_type? -709 185 35 1404 195 9 124 chr12 30526073 30526540 -113259915 + MLT2D LTR ERVL 2 414 0 440 324 101 31 chr12 30527321 30527865 -113258590 + L1ME3A LINE L1 5269 5890 -280 228 35 0 0 chr12 30527946 30527975 -113258480 + (CA)n Simple_repeat Simple_repeat 2 30 0 478 286 17 79 chr12 30528153 30528394 -113258061 - LTR67 LTR ERVL -58 499 274 213 283 0 0 chr12 30529503 30529556 -113256899 + (TG)n Simple_repeat Simple_repeat 2 54 0 563 320 52 34 chr12 30529737 30530006 -113256449 - LTR33 LTR ERVL -247 274 1 287 347 47 13 chr12 30530304 30530454 -113256001 - ERVL LTR ERVL -440 5324 5170 340 291 14 54 chr12 30530467 30530615 -113255840 - LTR16C LTR ERVL -50 441 300 185 359 0 0 chr12 30531288 30531352 -113255103 + MIR3 SINE MIR 121 184 -24 5652 193 38 7 chr12 30532377 30532784 -113253671 + L1MC1 LINE L1 4341 4734 -1599 1348 225 39 11 chr12 30532784 30533139 -113253316 + MLT1A1 LTR MaLR 1 365 0 5652 193 38 7 chr12 30533139 30533704 -113252751 + L1MC1 LINE L1 4734 5280 -1053 2126 98 44 0 chr12 30533704 30534000 -113252455 + AluSc SINE Alu 1 309 0 5652 193 38 7 chr12 30534000 30534918 -113251537 + L1MC1 LINE L1 5280 6288 -45 288 317 10 0 chr12 30536535 30536639 -113249816 + MER94 DNA DNA 1 105 -29 1796 148 7 40 chr12 30536826 30537130 -113249325 - AluSx SINE Alu -18 294 1 417 298 53 18 chr12 30538527 30538698 -113247757 - MIR SINE MIR -20 242 66 279 398 16 8 chr12 30541545 30541673 -113244782 - L2 LINE L2 -3 3310 3182 890 228 126 33 chr12 30541741 30542178 -113244277 - L1ME2 LINE L1 -6 6158 5644 703 283 52 20 chr12 30542160 30542564 -113243891 - L1ME2 LINE L1 -743 5403 5000 * 1857 258 42 23 chr12 30542556 30543125 -113243330 - L1ME1 LINE L1 -4 6162 5583 556 309 50 23 chr12 30543134 30543393 -113243062 + L1M3d LINE L1 5 270 -5621 5100 167 30 25 chr12 30543393 30543872 -113242583 + L1MA7 LINE L1 4840 5315 -976 2238 73 13 3 chr12 30543872 30544172 -113242283 + AluSc SINE Alu 1 303 -6 5100 167 30 25 chr12 30544172 30545137 -113241318 + L1MA7 LINE L1 5315 6291 0 471 276 193 4 chr12 30545154 30545429 -113241026 - L1ME1 LINE L1 -583 5583 5257 8267 160 34 14 chr12 30545442 30546829 -113239626 - L1MA4 LINE L1 -11 6289 4835 2365 149 16 0 chr12 30546829 30547198 -113239257 + THE1C LTR MaLR 1 375 0 8267 160 34 14 chr12 30547198 30548345 -113238110 - L1MA4 LINE L1 -1465 4835 3712 413 281 168 0 chr12 30548346 30548542 -113237913 - L1ME1 LINE L1 -883 5263 5035 2703 250 65 17 chr12 30548554 30549503 -113236952 - L1ME1 LINE L1 -1265 4881 3887 2791 204 33 23 chr12 30549536 30549837 -113236618 - L1 LINE L1 -1429 4717 4421 2661 151 35 116 chr12 30549837 30550492 -113235963 + MER7C DNA MER2_type 1 602 0 2791 204 33 23 chr12 30550492 30550883 -113235572 - L1 LINE L1 -1725 4421 4018 317 226 55 71 chr12 30550907 30551062 -113235393 - MLT1L LTR MaLR -305 141 32 301 120 0 0 chr12 30551416 30551466 -113234989 - L1PA16 LINE L1 0 6166 6117 1719 172 26 13 chr12 30553064 30553372 -113233083 - AluJb SINE Alu 0 312 1 29 0 0 0 chr12 30554742 30554771 -113231684 + AT_rich Low_complexity Low_complexity 1 29 0 804 198 6 12 chr12 30554833 30555014 -113231441 - FRAM SINE Alu 0 176 1 373 297 105 93 chr12 30555702 30556110 -113230345 + LTR16C LTR ERVL 79 491 0 873 270 9 22 chr12 30556331 30556557 -113229898 + MER58A DNA MER1_type 1 223 -1 366 245 0 0 chr12 30557180 30557278 -113229177 + (TTTG)n Simple_repeat Simple_repeat 3 100 0 2451 84 0 6 chr12 30557512 30557823 -113228632 + AluSc SINE Alu 1 309 0 332 288 35 47 chr12 30558085 30558255 -113228200 + MER21-int LTR ERV1 3628 3795 -396 404 335 46 10 chr12 30558618 30558815 -113227640 + HERVL LTR ERVL 3600 3803 -1851 304 350 67 17 chr12 30559020 30559260 -113227195 + HERVL LTR ERVL 3949 4200 -1564 1091 378 21 11 chr12 30559348 30559978 -113226477 + HERVL LTR ERVL 4317 4952 -812 309 316 9 18 chr12 30560068 30560182 -113226273 + HERVL LTR ERVL 5040 5152 -502 404 376 38 35 chr12 30560734 30561053 -113225402 + LTR16C LTR ERVL 158 477 -14 234 320 147 0 chr12 30561063 30561138 -113225317 + L2 LINE L2 3096 3181 -91 33 43 0 0 chr12 30561152 30561199 -113225256 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr12 30561264 30561296 -113225159 + AT_rich Low_complexity Low_complexity 1 32 0 600 325 88 8 chr12 30561557 30561797 -113224658 - MIR SINE MIR 0 262 4 229 325 114 9 chr12 30562773 30562887 -113223568 + L2 LINE L2 3147 3272 0 180 328 0 0 chr12 30563404 30563465 -113222990 - L2 LINE L2 -358 2955 2895 183 338 68 40 chr12 30563707 30563750 -113222705 - L2 LINE L2 -918 2396 2356 2016 135 0 0 chr12 30563750 30564067 -113222388 - AluSx SINE Alu 0 317 1 183 338 68 40 chr12 30564067 30564170 -113222285 - L2 LINE L2 -958 2356 2245 532 280 28 0 chr12 30564495 30564638 -113221817 - MIR SINE MIR -59 203 57 183 129 0 0 chr12 30564967 30564998 -113221457 + (TG)n Simple_repeat Simple_repeat 2 32 0 825 286 48 0 chr12 30565242 30565469 -113220986 + MIR SINE MIR 25 262 0 570 329 147 52 chr12 30565609 30566204 -113220251 - L2 LINE L2 0 3272 2567 2075 125 3 0 chr12 30566204 30566500 -113219955 + AluSp SINE Alu 1 297 -16 570 329 147 52 chr12 30566500 30566835 -113219620 - L2 LINE L2 -705 2567 2265 280 349 72 48 chr12 30567103 30567352 -113219103 - L2 LINE L2 -2495 819 565 213 286 110 0 chr12 30567879 30567970 -113218485 - MIR3 SINE MIR -3 205 105 291 54 0 0 chr12 30568925 30568962 -113217493 + (TA)n Simple_repeat Simple_repeat 1 37 0 1059 308 45 26 chr12 30569623 30570049 -113216406 + L2 LINE L2 2879 3312 -1 286 364 61 20 chr12 30570259 30570457 -113215998 + MLT1K LTR MaLR 41 246 -342 568 338 71 30 chr12 30570606 30570872 -113215583 - L2 LINE L2 -5 3308 3032 24 0 0 0 chr12 30570928 30570952 -113215503 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr12 30570992 30571025 -113215430 + AT_rich Low_complexity Low_complexity 1 33 0 1852 136 59 67 chr12 30572541 30572608 -113213847 - L1MA9 LINE L1 0 6312 6246 186 43 0 0 chr12 30572608 30572631 -113213824 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 276 30 0 0 chr12 30572630 30572663 -113213792 + (CA)n Simple_repeat Simple_repeat 2 34 0 1852 136 59 67 chr12 30572631 30572768 -113213687 - L1MA9 LINE L1 -66 6246 6109 2222 118 0 3 chr12 30572768 30573072 -113213383 - AluSg SINE Alu -7 303 1 1852 136 59 67 chr12 30573072 30573288 -113213167 - L1MA9 LINE L1 -203 6109 5926 603 27 0 0 chr12 30573520 30573593 -113212862 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2787 233 59 24 chr12 30573718 30574560 -113211895 - L1MC4 LINE L1 -1 8041 7170 830 191 41 0 chr12 30574736 30574883 -113211572 - FRAM SINE Alu -23 153 1 300 296 106 28 chr12 30576384 30576526 -113209929 - L2 LINE L2 0 3313 3161 4013 24 0 4 chr12 30577645 30578179 -113208276 - L1PA2 LINE L1 -712 5443 4912 6279 19 4 0 chr12 30578179 30578903 -113207552 + L1PA2 LINE L1 5421 6153 -2 226 217 0 0 chr12 30579110 30579156 -113207299 + CT-rich Low_complexity Low_complexity 1 46 0 2500 242 69 14 chr12 30579262 30579677 -113206778 - MER76 LTR ERV -17 671 207 2336 165 21 0 chr12 30579677 30580059 -113206396 + MSTD LTR MaLR 5 394 -2 2500 242 69 14 chr12 30580059 30580279 -113206176 - MER76 LTR ERV -481 207 1 246 271 0 52 chr12 30580299 30580395 -113206060 + MIR SINE MIR 151 241 -21 22 0 0 0 chr12 30580395 30580417 -113206038 + AT_rich Low_complexity Low_complexity 1 22 0 206 121 30 0 chr12 30580427 30580460 -113205995 + MIR SINE MIR 226 259 -3 * 271 240 260 0 chr12 30580441 30580537 -113205918 + L2 LINE L2 2503 2623 -691 1160 214 67 43 chr12 30580625 30581041 -113205414 + L1MC5 LINE L1 7136 7561 -400 186 43 0 0 chr12 30581083 30581106 -113205349 + (CA)n Simple_repeat Simple_repeat 2 24 0 509 264 109 11 chr12 30581135 30581309 -113205146 - L1ME3 LINE L1 -151 6011 5821 2103 74 50 20 chr12 30581779 30582078 -113204377 + AluSx SINE Alu 1 308 -4 313 313 84 6 chr12 30582302 30582468 -113203987 - L1ME1 LINE L1 -4 6162 5984 2088 231 54 23 chr12 30582474 30582776 -113203679 - L1ME1 LINE L1 -279 5887 5596 1455 166 66 36 chr12 30582776 30583077 -113203378 + AluJb SINE Alu 2 311 -1 2088 231 54 23 chr12 30583077 30583452 -113203003 - L1ME1 LINE L1 -570 5596 5179 786 146 119 26 chr12 30583452 30583603 -113202852 - FRAM SINE Alu -1 165 1 2088 231 54 23 chr12 30583603 30583781 -113202674 - L1ME1 LINE L1 -987 5179 5008 616 253 14 92 chr12 30583784 30584077 -113202378 - MER93b LTR ERV1 0 373 104 1444 265 80 16 chr12 30584199 30584937 -113201518 - L1MEc LINE L1 -1089 5126 4301 366 283 28 0 chr12 30584965 30585110 -113201345 - L1MEc LINE L1 -2734 3481 3333 1534 168 75 40 chr12 30585110 30585245 -113201210 + MLT1B LTR MaLR 1 130 -260 2011 134 17 3 chr12 30585245 30585536 -113200919 - AluSx SINE Alu -17 295 1 1534 168 75 40 chr12 30585536 30585573 -113200882 + MLT1B LTR MaLR 130 164 -226 189 0 0 0 chr12 30585573 30585594 -113200861 + (TC)n Simple_repeat Simple_repeat 2 22 0 1534 168 75 40 chr12 30585594 30585795 -113200660 + MLT1B LTR MaLR 164 388 -2 4479 221 85 52 chr12 30585799 30587123 -113199332 + MLT1B-int LTR MaLR 4 1370 -1 938 236 38 124 chr12 30587124 30587551 -113198904 + MLT1B LTR MaLR 1 390 0 326 194 151 43 chr12 30587752 30587845 -113198610 + MLT1B LTR MaLR 1 103 -287 * 1633 176 113 36 chr12 30587834 30588225 -113198230 - MLT2B1 LTR ERVL -99 421 1 255 189 113 44 chr12 30588228 30588387 -113198068 - L1MEc LINE L1 -2912 3303 3134 482 228 80 25 chr12 30588459 30588696 -113197759 - L1MEc LINE L1 -5331 1065 816 1881 196 44 5 chr12 30588703 30589137 -113197318 - L1MC2 LINE L1 -13 6331 5881 948 260 63 32 chr12 30589143 30589554 -113196901 - L1MEc LINE L1 -5919 477 54 2319 145 30 35 chr12 30589774 30590208 -113196247 - MSTB1 LTR MaLR 0 432 1 784 337 116 0 chr12 30591591 30591989 -113194466 - L3 LINE CR1 -6 1571 1128 622 216 216 0 chr12 30592709 30592838 -113193617 + MER3 DNA MER1_type 2 102 -107 204 67 0 0 chr12 30592838 30592868 -113193587 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 622 216 216 0 chr12 30592868 30592905 -113193550 + MER3 DNA MER1_type 102 204 -5 286 22 65 0 chr12 30593792 30593838 -113192617 + A-rich Low_complexity Low_complexity 3 51 0 427 165 66 0 chr12 30594175 30594266 -113192189 - MLT1G LTR MaLR -12 543 447 1338 108 38 58 chr12 30594298 30594538 -113191917 - L1PA8 LINE L1 -6 6166 5932 1501 67 0 0 chr12 30594540 30594748 -113191707 + L1PA8 LINE L1 5724 5931 -241 843 235 135 43 chr12 30594758 30595113 -113191342 - MLT1G LTR MaLR -113 454 98 2284 67 7 11 chr12 30595113 30595397 -113191058 - AluSc SINE Alu -13 296 14 843 235 135 43 chr12 30595397 30595504 -113190951 - MLT1G LTR MaLR -469 98 2 228 122 0 0 chr12 30596116 30596157 -113190298 + (TTTTTA)n Simple_repeat Simple_repeat 5 45 0 555 292 119 26 chr12 30603282 30603508 -113182947 - MIR SINE MIR 0 262 16 25 31 0 0 chr12 30604423 30604455 -113182000 + AT_rich Low_complexity Low_complexity 1 32 0 449 240 19 29 chr12 30604848 30604952 -113181503 - MER5A DNA MER1_type -77 112 10 246 62 0 0 chr12 30604982 30605014 -113181441 + (TG)n Simple_repeat Simple_repeat 1 32 0 1781 139 0 45 chr12 30605623 30605911 -113180544 - AluSx SINE Alu -37 275 1 181 328 187 45 chr12 30606967 30607101 -113179354 - MIR3 SINE MIR -23 185 33 188 238 63 16 chr12 30607766 30607829 -113178626 + L3 LINE CR1 1505 1570 -7 190 398 17 23 chr12 30609202 30609378 -113177077 - L2 LINE L2 -214 3058 2884 1975 136 11 0 chr12 30609751 30610037 -113176418 - AluJb SINE Alu -23 289 1 323 130 19 0 chr12 30610347 30610401 -113176054 + AluJb SINE Alu 87 141 -161 474 319 107 9 chr12 30611103 30611319 -113175136 - MIR SINE MIR -18 244 8 228 355 18 9 chr12 30611832 30611942 -113174513 + L3b LINE CR1 1111 1221 -362 328 276 112 47 chr12 30613662 30613832 -113172623 + MIR SINE MIR 76 256 -6 2042 126 0 26 chr12 30613892 30614201 -113172254 - AluSg SINE Alu -9 301 1 410 298 83 30 chr12 30614273 30614441 -113172014 - MIR SINE MIR -56 206 30 204 152 45 0 chr12 30614703 30614769 -113171686 + (TA)n Simple_repeat Simple_repeat 1 69 0 1857 257 89 7 chr12 30614778 30615781 -113170674 - L1ME3A LINE L1 -258 6192 5104 1062 167 56 123 chr12 30615855 30616154 -113170301 - AluJo SINE Alu 0 324 44 232 244 118 59 chr12 30616178 30616416 -113170039 - L1ME3A LINE L1 -1487 4939 4688 21 0 0 0 chr12 30617341 30617362 -113169093 + AT_rich Low_complexity Low_complexity 1 21 0 441 252 64 41 chr12 30617397 30617711 -113168744 - L1ME3A LINE L1 -3575 2851 2531 267 240 86 0 chr12 30618024 30618164 -113168291 - L1MEc LINE L1 -4734 1873 1525 375 300 158 16 chr12 30619542 30619732 -113166723 - MIR SINE MIR -21 241 25 184 274 0 88 chr12 30621397 30621499 -113164956 - MER5A DNA MER1_type -34 155 63 323 307 53 9 chr12 30622622 30622736 -113163719 + MIR3 SINE MIR 89 207 -1 482 256 66 54 chr12 30622926 30623184 -113163271 - MIR SINE MIR 0 262 2 21 0 0 0 chr12 30623753 30623774 -113162681 + AT_rich Low_complexity Low_complexity 1 21 0 305 329 93 56 chr12 30624362 30624578 -113161877 + L2 LINE L2 2944 3167 -105 1448 236 22 14 chr12 30624831 30625192 -113161263 - MER39 LTR ERV1 0 707 344 413 210 79 54 chr12 30625191 30625327 -113161128 - MER39 LTR ERV1 -447 138 5 * 2427 38 0 3 chr12 30625516 30625832 -113160623 + AluY SINE Alu 1 315 0 180 0 0 0 chr12 30625835 30625855 -113160600 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 223 229 49 16 chr12 30626180 30626241 -113160214 + L2 LINE L2 3210 3272 0 188 384 48 14 chr12 30626488 30626634 -113159821 - L2 LINE L2 -2 3311 3161 234 333 55 0 chr12 30627178 30627268 -113159187 + MIR SINE MIR 41 137 -71 182 272 105 35 chr12 30627447 30627561 -113158894 + MIR SINE MIR 39 160 -102 414 39 0 0 chr12 30627653 30627705 -113158750 + (CA)n Simple_repeat Simple_repeat 1 52 0 207 0 0 0 chr12 30628152 30628175 -113158280 + (TG)n Simple_repeat Simple_repeat 2 24 0 286 325 73 16 chr12 30630497 30630620 -113155835 - MIR3 SINE MIR -54 154 25 3458 71 16 0 chr12 30630768 30631204 -113155251 + MLT2A1 LTR ERVL 2 444 0 216 0 0 0 chr12 30631300 30631324 -113155131 + (CA)n Simple_repeat Simple_repeat 2 25 0 2729 202 23 23 chr12 30631452 30632146 -113154309 - L1MC3 LINE L1 0 7785 7092 23 24 0 24 chr12 30634563 30634584 -113151871 + AT_rich Low_complexity Low_complexity 1 22 -18 1671 54 27 0 chr12 30634584 30634806 -113151649 - L1MA1 LINE L1 0 6302 6075 23 24 0 24 chr12 30634806 30634825 -113151630 + AT_rich Low_complexity Low_complexity 22 40 0 488 304 81 6 chr12 30635756 30635917 -113150538 - MIR SINE MIR -70 192 20 325 230 53 10 chr12 30636246 30636392 -113150063 - MLT1I LTR MaLR 0 527 316 328 339 85 16 chr12 30637052 30637300 -113149155 - L2 LINE L2 -882 2432 2168 270 233 22 11 chr12 30638429 30638519 -113147936 + (TA)n Simple_repeat Simple_repeat 1 91 0 269 290 328 0 chr12 30638638 30638769 -113147686 + MIR SINE MIR 19 192 -70 737 321 19 0 chr12 30638797 30639006 -113147449 - MIR SINE MIR -21 241 29 21 36 0 0 chr12 30639341 30639369 -113147086 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 30639968 30639995 -113146460 + AT_rich Low_complexity Low_complexity 1 27 0 2172 281 117 29 chr12 30642108 30643643 -113142812 + L1ME2 LINE L1 3240 4909 -1237 560 247 86 6 chr12 30643692 30643854 -113142601 + L1ME3A LINE L1 5975 6149 -21 2829 145 14 6 chr12 30644888 30645379 -113141076 + L1MB3 LINE L1 5675 6169 -14 236 363 60 49 chr12 30645996 30646291 -113140164 + L2 LINE L2 2765 3059 -213 1007 251 27 0 chr12 30647360 30647583 -113138872 + MIR SINE MIR 1 229 -33 233 57 29 0 chr12 30648349 30648384 -113138071 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 1029 256 109 30 chr12 30649983 30650386 -113136069 + L1ME2 LINE L1 5660 6094 -70 * 5337 158 17 6 chr12 30650384 30651703 -113134752 + L1P4 LINE L1 4305 5629 -534 1843 157 3 20 chr12 30652554 30652860 -113133595 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 30653311 30653340 -113133115 + AT_rich Low_complexity Low_complexity 1 29 0 377 278 109 70 chr12 30654048 30654278 -113132177 - HAL1 LINE L1 -77 2430 2192 384 22 0 0 chr12 30654288 30654333 -113132122 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 781 257 182 75 chr12 30654335 30654818 -113131637 + LTR67 LTR ERVL 19 553 -4 670 319 4 23 chr12 30655381 30655644 -113130811 - HAL1 LINE L1 -717 1790 1533 198 71 0 0 chr12 30657231 30657259 -113129196 + (A)n Simple_repeat Simple_repeat 1 28 0 184 309 31 52 chr12 30658039 30658136 -113128319 + MIR SINE MIR 83 177 -85 536 167 158 0 chr12 30658147 30658261 -113128194 - L1MC2 LINE L1 -11 6333 6202 242 337 11 11 chr12 30659193 30659282 -113127173 - MER5B DNA MER1_type -1 177 89 649 242 96 32 chr12 30659426 30659707 -113126748 + L1ME4a LINE L1 5620 5918 -203 1023 184 114 145 chr12 30659791 30660138 -113126317 - MLT2B1 LTR ERVL 0 520 194 426 69 0 0 chr12 30660138 30660196 -113126259 + (TG)n Simple_repeat Simple_repeat 1 58 0 1023 184 114 145 chr12 30660196 30660385 -113126070 - MLT2B1 LTR ERVL -326 194 1 24 0 0 0 chr12 30661117 30661141 -113125314 + AT_rich Low_complexity Low_complexity 1 24 0 1309 178 0 13 chr12 30662069 30662305 -113124150 - MER46A DNA MER2_type -3 233 1 5075 101 40 6 chr12 30662476 30663252 -113123203 - L1MA3 LINE L1 0 6305 5504 334 270 122 41 chr12 30663586 30663782 -113122673 - MIR SINE MIR -50 212 1 25 31 0 0 chr12 30663826 30663858 -113122597 + AT_rich Low_complexity Low_complexity 1 32 0 2242 160 57 0 chr12 30663909 30664315 -113122140 + MSTB1 LTR MaLR 4 432 0 707 244 15 4 chr12 30664619 30664784 -113121671 + MIR SINE MIR 67 231 -31 27 29 0 0 chr12 30664820 30664854 -113121601 + AT_rich Low_complexity Low_complexity 1 34 0 1053 182 0 0 chr12 30665080 30665256 -113121199 - MER46A DNA MER2_type -2 234 59 1047 106 11 11 chr12 30665258 30665670 -113120785 + (GAAA)n Simple_repeat Simple_repeat 1 412 0 1392 233 136 17 chr12 30665679 30666099 -113120356 + MLT1E LTR MaLR 122 591 -2 394 285 3 31 chr12 30666449 30666758 -113119697 + G-rich Low_complexity Low_complexity 1 300 0 3833 96 36 3 chr12 30666834 30667409 -113119046 + L1PA13 LINE L1 5570 6163 0 284 339 23 0 chr12 30667513 30667643 -113118812 + L1ME LINE L1 5486 5618 -546 323 224 35 0 chr12 30667924 30668009 -113118446 - MIR SINE MIR -11 251 164 261 241 0 0 chr12 30668227 30668281 -113118174 + (CA)n Simple_repeat Simple_repeat 1 54 0 974 272 20 8 chr12 30669026 30669280 -113117175 + MIR SINE MIR 5 261 -1 827 318 55 21 chr12 30669872 30670067 -113116388 - L3 LINE CR1 -630 947 735 2217 135 28 6 chr12 30670067 30670423 -113116032 - THE1B LTR MaLR 0 364 1 827 318 55 21 chr12 30670423 30670557 -113115898 - L3 LINE CR1 -842 735 607 335 244 76 34 chr12 30670891 30671010 -113115445 - MER103 DNA DNA -2 164 41 210 37 0 0 chr12 30672457 30672484 -113113971 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr12 30672631 30672652 -113113803 + AT_rich Low_complexity Low_complexity 1 21 0 1383 279 44 23 chr12 30674568 30675152 -113111303 + L2 LINE L2 2714 3309 -4 1547 174 3 38 chr12 30675513 30675806 -113110649 - AluJo SINE Alu -20 292 10 456 215 0 0 chr12 30677218 30677311 -113109144 + L1MC3 LINE L1 6765 6857 -928 218 258 30 30 chr12 30677321 30677387 -113109068 - MER5A DNA MER1_type -117 72 7 865 275 90 60 chr12 30677741 30678309 -113108146 - HAL1 LINE L1 -713 1794 1210 1871 117 0 29 chr12 30678399 30678673 -113107782 - AluSg SINE Alu -44 266 1 225 154 0 0 chr12 30678779 30678818 -113107637 + T-rich Low_complexity Low_complexity 1 39 0 2171 132 0 0 chr12 30679460 30679763 -113106692 - AluSx SINE Alu -7 305 3 207 208 0 19 chr12 30679968 30680021 -113106434 + T-rich Low_complexity Low_complexity 4 55 0 318 296 61 35 chr12 30680023 30680138 -113106317 + MIR SINE MIR 3 120 -142 472 309 48 18 chr12 30680269 30680437 -113106018 - MER5B DNA MER1_type -2 176 4 27 29 0 0 chr12 30680868 30680902 -113105553 + AT_rich Low_complexity Low_complexity 1 34 0 330 214 130 53 chr12 30681535 30681666 -113104789 - MIR SINE MIR -34 228 88 240 191 213 106 chr12 30681659 30681800 -113104655 + MER5A DNA MER1_type 10 165 -24 * 2566 86 3 3 chr12 30684069 30684417 -113102038 - THE1A LTR MaLR -7 348 1 6893 158 53 20 chr12 30686333 30688279 -113098176 - L1PBa LINE L1 -2135 4727 2790 2114 119 0 0 chr12 30688279 30688572 -113097883 - AluSc SINE Alu -16 293 1 6893 158 53 20 chr12 30688572 30689561 -113096894 - L1PBa LINE L1 -4072 2790 1835 11618 232 27 16 chr12 30689564 30691004 -113095451 - L1PA16 LINE L1 -173 6644 5221 2329 114 16 47 chr12 30691004 30691391 -113095064 + THE1C LTR MaLR 1 375 0 11618 232 27 16 chr12 30691391 30692408 -113094047 - L1PA16 LINE L1 -1596 5221 4216 1877 156 0 4 chr12 30692408 30692712 -113093743 - AluSg SINE Alu 0 314 12 11618 232 27 16 chr12 30692712 30695314 -113091141 - L1PA16 LINE L1 -2601 4216 1509 315 338 8 15 chr12 30696190 30696323 -113090132 - L1PA16 LINE L1 -5276 1511 1380 1165 343 44 19 chr12 30696370 30696938 -113089517 - L1PA16 LINE L1 -6200 587 6 4089 211 45 21 chr12 30696956 30698078 -113088377 - L1M2 LINE L1 -4334 2515 1368 384 287 78 30 chr12 30698788 30698955 -113087500 + L1MEc LINE L1 2024 2198 -4198 526 235 23 60 chr12 30698963 30699180 -113087275 + L1MEc LINE L1 2206 2414 -3801 950 266 51 0 chr12 30699183 30699420 -113087035 - MLT1E LTR MaLR -60 533 285 374 207 0 0 chr12 30699480 30699579 -113086876 + L1MEc LINE L1 2686 2784 -3431 367 176 0 0 chr12 30699579 30699653 -113086802 + MLT1E LTR MaLR 520 593 0 838 272 46 37 chr12 30699698 30699832 -113086623 + L1MEc LINE L1 4108 4239 -1976 7480 127 47 4 chr12 30699832 30699878 -113086577 - HSMAR2 DNA Mariner -2 1300 1257 198 103 0 0 chr12 30699878 30699907 -113086548 + (TA)n Simple_repeat Simple_repeat 1 29 0 7480 127 47 4 chr12 30699907 30701104 -113085351 - HSMAR2 DNA Mariner -45 1257 3 838 272 46 37 chr12 30701104 30701318 -113085137 + L1MEc LINE L1 4239 4459 -1756 383 329 155 44 chr12 30701394 30701710 -113084745 - L2 LINE L2 -443 2871 2521 349 338 73 28 chr12 30702114 30702401 -113084054 - L2 LINE L2 0 3313 3014 7214 171 35 13 chr12 30702835 30703030 -113083425 + L1M2 LINE L1 3661 3850 -2296 1947 143 26 54 chr12 30703030 30703416 -113083039 - THE1C LTR MaLR 0 375 1 7214 171 35 13 chr12 30703416 30704785 -113081670 + L1M2 LINE L1 3850 5259 -887 290 186 0 0 chr12 30704798 30704868 -113081587 + L1M2 LINE L1 5390 5459 -832 965 234 43 40 chr12 30704905 30705050 -113081405 - MLT1J LTR MaLR -205 306 163 2492 129 3 3 chr12 30705050 30705414 -113081041 + THE1B LTR MaLR 1 364 0 10111 109 37 37 chr12 30705414 30706994 -113079461 + THE1B-int LTR MaLR 1 1580 0 2249 118 27 33 chr12 30706994 30707360 -113079095 + THE1B LTR MaLR 1 364 0 965 234 43 40 chr12 30707360 30707515 -113078940 - MLT1J LTR MaLR -347 164 3 906 259 18 0 chr12 30707594 30707814 -113078641 - MER58A DNA MER1_type 0 224 1 2294 134 29 26 chr12 30707820 30708239 -113078216 - MSTB LTR MaLR -5 421 2 200 349 15 15 chr12 30708272 30708338 -113078117 + L2 LINE L2 3157 3222 -50 7375 37 3 0 chr12 30708366 30709295 -113077160 + L1PA3 LINE L1 5224 6155 0 432 0 0 0 chr12 30709459 30709507 -113076948 + (TG)n Simple_repeat Simple_repeat 2 49 0 4129 143 11 22 chr12 30709625 30710365 -113076090 - MER49 LTR ERV1 -187 736 5 1982 106 0 46 chr12 30710694 30710997 -113075458 - AluSg SINE Alu -21 289 1 270 180 0 0 chr12 30711250 30711300 -113075155 - MER96B DNA MER1_type? -175 242 193 463 201 71 24 chr12 30711581 30711750 -113074705 - MER96B DNA MER1_type? -239 178 2 668 152 9 0 chr12 30713694 30713806 -113072649 + L1MC/D LINE L1 5672 5784 -560 3542 168 31 31 chr12 30713806 30714507 -113071948 - MER44D DNA MER2_type -4 701 1 1094 179 25 145 chr12 30714507 30714745 -113071710 - MLT1B LTR MaLR -32 358 188 2028 129 3 16 chr12 30714745 30715048 -113071407 - AluSg SINE Alu -11 299 1 1094 179 25 145 chr12 30715048 30715216 -113071239 - MLT1B LTR MaLR -202 188 1 427 254 8 74 chr12 30715284 30715406 -113071049 - MIR SINE MIR -147 115 2 776 218 19 51 chr12 30716286 30716502 -113069953 + MER3 DNA MER1_type 1 209 0 386 282 8 16 chr12 30718631 30718755 -113067700 + MLT1H LTR MaLR 38 160 -389 317 341 73 55 chr12 30719060 30719224 -113067231 - L2 LINE L2 -15 3257 3091 615 290 28 16 chr12 30720199 30720454 -113066001 + MIR SINE MIR 2 259 -3 291 233 55 110 chr12 30720526 30720599 -113065856 - MIR3 SINE MIR -10 198 135 291 28 0 0 chr12 30720599 30720635 -113065820 + (CA)n Simple_repeat Simple_repeat 2 37 0 291 233 55 110 chr12 30720635 30720707 -113065748 - MIR3 SINE MIR -73 135 61 417 66 0 0 chr12 30721228 30721289 -113065166 + (CA)n Simple_repeat Simple_repeat 2 62 0 2239 123 0 0 chr12 30724752 30725053 -113061402 + AluSx SINE Alu 1 301 -11 1752 187 74 60 chr12 30725157 30725644 -113060811 + MLT1D LTR MaLR 12 505 0 267 362 55 36 chr12 30726374 30726681 -113059774 + L2 LINE L2 1772 2084 -1230 685 133 46 67 chr12 30726953 30727148 -113059307 - L1MA7 LINE L1 -1 6290 6100 180 245 38 0 chr12 30727199 30727252 -113059203 - L3 LINE CR1 -995 582 528 25 0 0 0 chr12 30727491 30727516 -113058939 + AT_rich Low_complexity Low_complexity 1 25 0 38062 37 56 1 chr12 30728411 30734235 -113052220 - L1PA2 LINE L1 -2 6153 3 614 264 72 11 chr12 30734371 30734720 -113051735 + L1M4 LINE L1 5012 5381 -765 1244 191 22 4 chr12 30735259 30735532 -113050923 - L1M4 LINE L1 -605 5815 5538 * 1643 234 139 28 chr12 30735527 30735670 -113050785 - L1M4 LINE L1 -3450 2932 2806 1973 146 0 7 chr12 30735670 30735964 -113050491 + AluSx SINE Alu 1 292 -20 1643 234 139 28 chr12 30735964 30737252 -113049203 - L1M4 LINE L1 -3576 2806 1321 1792 220 19 3 chr12 30737263 30737622 -113048833 + Tigger7 DNA MER2_type 2 366 -2121 315 391 99 18 chr12 30739180 30739635 -113046820 - L2 LINE L2 -583 2731 2240 1642 160 114 58 chr12 30740737 30741130 -113045325 - MSTA LTR MaLR -13 415 1 7293 183 106 1 chr12 30741130 30742624 -113043831 - MSTA-int LTR MaLR 0 1651 1 1718 175 146 13 chr12 30742624 30743002 -113043453 - MSTA LTR MaLR 0 428 1 181 301 0 36 chr12 30743005 30743088 -113043367 - L2 LINE L2 -1291 2023 1944 1149 157 77 28 chr12 30743422 30743615 -113042840 + MLT1C LTR MaLR 3 212 -255 381 43 0 0 chr12 30743615 30743662 -113042793 + (CA)n Simple_repeat Simple_repeat 2 48 0 1149 157 77 28 chr12 30743662 30743716 -113042739 + MLT1C LTR MaLR 212 262 -205 2121 130 72 17 chr12 30743716 30744061 -113042394 - THE1B LTR MaLR 0 364 1 10516 103 31 0 chr12 30744069 30745594 -113040861 - THE1B-int LTR MaLR -8 1572 1 2053 136 72 20 chr12 30745594 30745940 -113040515 - THE1B LTR MaLR 0 364 1 960 218 10 0 chr12 30745940 30746146 -113040309 + MLT1C LTR MaLR 258 465 -2 185 255 314 0 chr12 30747032 30747134 -113039321 - MIR SINE MIR -77 185 52 408 277 8 0 chr12 30748656 30748775 -113037680 + MER103 DNA DNA 33 152 -14 233 344 61 0 chr12 30750172 30750303 -113036152 - MIR3 SINE MIR -6 202 64 25 31 0 0 chr12 30750449 30750481 -113035974 + AT_rich Low_complexity Low_complexity 1 32 0 301 258 125 16 chr12 30751015 30751143 -113035312 - L2 LINE L2 0 3313 3172 6448 126 9 30 chr12 30752051 30752563 -113033892 + L1MA2 LINE L1 4812 5333 -971 368 91 212 0 chr12 30752563 30752629 -113033826 + MADE1 DNA Mariner 1 80 0 6448 126 9 30 chr12 30752629 30753643 -113032812 + L1MA2 LINE L1 5333 6304 0 308 358 108 50 chr12 30753855 30753909 -113032546 - L2 LINE L2 -353 2961 2912 1836 225 57 97 chr12 30753909 30754198 -113032257 + MLT1E1 LTR MaLR 1 300 -354 2329 101 0 0 chr12 30754198 30754495 -113031960 - AluY SINE Alu -14 297 1 1836 225 57 97 chr12 30754495 30754886 -113031569 + MLT1E1 LTR MaLR 300 654 0 308 358 108 50 chr12 30754886 30755914 -113030541 - L2 LINE L2 -402 2912 1816 3015 192 68 51 chr12 30756020 30756947 -113029508 + L1MB8 LINE L1 5198 6140 -38 22 0 0 0 chr12 30756961 30756983 -113029472 + AT_rich Low_complexity Low_complexity 1 22 0 349 263 33 59 chr12 30758770 30758922 -113027533 + MIR SINE MIR 13 160 -102 220 150 17 50 chr12 30758946 30759006 -113027449 + (TA)n Simple_repeat Simple_repeat 2 59 0 403 309 30 121 chr12 30759350 30759781 -113026674 - L2 LINE L2 -6 3266 2875 880 61 0 17 chr12 30759837 30759952 -113026503 + AluSg/x SINE Alu 200 312 0 623 251 37 0 chr12 30759991 30760154 -113026301 - MLT1E1 LTR MaLR -393 261 93 236 266 0 31 chr12 30760783 30760847 -113025608 + MLT1K LTR MaLR 188 249 -339 630 285 40 24 chr12 30761275 30761524 -113024931 + MIR SINE MIR 3 255 -7 2235 122 0 6 chr12 30763842 30764275 -113022180 - AluSx SINE Alu 0 433 3 220 346 122 56 chr12 30764992 30765206 -113021249 - L2 LINE L2 -181 3091 2864 587 354 70 34 chr12 30765411 30765999 -113020456 - L2 LINE L2 -643 2671 2063 265 350 55 32 chr12 30767210 30767430 -113019025 - MIR SINE MIR 0 262 38 1885 109 4 0 chr12 30768484 30768740 -113017715 + AluSx SINE Alu 1 257 -55 226 297 64 59 chr12 30770702 30770904 -113015551 + L2 LINE L2 3075 3277 -36 246 193 175 0 chr12 30772086 30772143 -113014312 - MIR3 SINE MIR -15 193 127 2352 100 7 0 chr12 30772252 30772551 -113013904 - AluSx SINE Alu -11 301 1 400 287 8 31 chr12 30772617 30772746 -113013709 - L2 LINE L2 0 3313 3188 1907 183 93 16 chr12 30773100 30773531 -113012924 + MLT1C LTR MaLR 1 464 -3 286 111 111 0 chr12 30773582 30773636 -113012819 - MLT1C LTR MaLR -371 96 37 671 232 0 0 chr12 30775028 30775153 -113011302 + FLAM_C SINE Alu 1 125 -18 909 325 8 0 chr12 30775266 30775515 -113010940 + MIR SINE MIR 8 258 -4 330 297 110 26 chr12 30776464 30776619 -113009836 - MIR3 SINE MIR 0 208 41 225 431 0 15 chr12 30777065 30777202 -113009253 - L3 LINE CR1 -377 1200 1066 311 270 61 40 chr12 30779080 30779228 -113007227 + HAL1 LINE L1 1313 1463 -1044 213 39 0 0 chr12 30779267 30779293 -113007162 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 813 157 15 12 chr12 30779295 30779708 -113006747 + GA-rich Low_complexity Low_complexity 1 414 0 570 260 101 28 chr12 30779742 30780030 -113006425 + L1 LINE L1 3071 3379 -2767 1015 193 56 5 chr12 30780277 30780474 -113005981 - MER21B LTR ERV1 -124 739 533 250 162 0 0 chr12 30782459 30782496 -113003959 - MSTB LTR MaLR -129 297 261 358 191 12 48 chr12 30782668 30782752 -113003703 + MER58A DNA MER1_type 1 81 -26 1098 259 26 10 chr12 30782752 30783057 -113003398 - MER93a LTR ERV1 0 402 93 671 181 42 14 chr12 30783180 30783324 -113003131 + MER58A DNA MER1_type 74 221 -3 1823 159 7 26 chr12 30783817 30784125 -113002330 + AluJb SINE Alu 5 306 -6 300 337 114 10 chr12 30784809 30785002 -113001453 + MIR SINE MIR 34 246 -16 1087 163 91 10 chr12 30785854 30786063 -113000392 - AluJb SINE Alu -23 289 64 468 134 0 0 chr12 30786063 30786130 -113000325 + AluJb SINE Alu 52 118 -194 42 20 0 0 chr12 30786130 30786179 -113000276 + AT_rich Low_complexity Low_complexity 1 49 0 634 221 42 11 chr12 30786185 30786375 -113000080 + L1M4c LINE L1 1306 1501 -4883 660 294 16 102 chr12 30786391 30786772 -112999683 - L2 LINE L2 -2672 642 295 310 328 41 51 chr12 30786797 30786992 -112999463 + HAL1b LINE L1 105 297 -1051 24 32 0 0 chr12 30787031 30787062 -112999393 + AT_rich Low_complexity Low_complexity 1 31 0 2052 151 0 7 chr12 30787260 30787565 -112998890 + AluSx SINE Alu 1 303 -9 288 172 0 78 chr12 30787867 30787931 -112998524 - MER21B LTR ERV1 -804 59 1 533 297 56 36 chr12 30787942 30788581 -112997874 + L1 LINE L1 3632 4283 -1863 381 274 81 58 chr12 30788584 30788754 -112997701 + L1 LINE L1 4328 4506 -1640 1823 188 3 7 chr12 30788754 30789062 -112997393 + AluJb SINE Alu 1 307 -5 381 274 81 58 chr12 30789062 30789114 -112997341 + L1 LINE L1 4506 4555 -1591 185 320 21 31 chr12 30789435 30789532 -112996923 + L2 LINE L2 1950 2045 -1269 319 253 0 0 chr12 30789547 30789626 -112996829 + MER34 LTR ERV1 1 79 -463 2134 20 0 0 chr12 30789953 30790200 -112996255 + L1PA3 LINE L1 5909 6155 0 343 270 63 9 chr12 30790256 30790367 -112996088 + MER34 LTR ERV1 381 497 -45 562 87 10 48 chr12 30790474 30790577 -112995878 + L1PA3 LINE L1 6057 6155 0 416 264 54 31 chr12 30790630 30790759 -112995696 + MER34 LTR ERV1 381 512 -30 1615 220 95 64 chr12 30790873 30791696 -112994759 + Charlie2 DNA MER1_type 2015 2862 0 288 0 0 0 chr12 30793565 30793597 -112992858 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 269 169 17 0 chr12 30794062 30794121 -112992334 + CT-rich Low_complexity Low_complexity 1 60 0 309 352 102 67 chr12 30797251 30797683 -112988772 - L2 LINE L2 -497 2817 2371 280 290 56 31 chr12 30797694 30797856 -112988599 - L2 LINE L2 -1259 2055 1890 190 286 0 0 chr12 30798009 30798058 -112988397 + L2 LINE L2 3177 3225 -88 186 221 15 73 chr12 30798128 30798196 -112988259 + L2 LINE L2 3246 3309 -4 365 289 74 32 chr12 30799275 30799465 -112986990 - MIR3 SINE MIR -7 201 4 252 0 0 0 chr12 30799470 30799498 -112986957 + (CA)n Simple_repeat Simple_repeat 1 28 0 1236 35 0 29 chr12 30800655 30800828 -112985627 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 21 57 0 0 chr12 30801407 30801442 -112985013 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 30801716 30801758 -112984697 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr12 30801894 30801929 -112984526 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 69 23 chr12 30802123 30802339 -112984116 - L3b LINE CR1 -115 1468 1243 764 125 8 0 chr12 30802809 30802937 -112983518 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 200 257 10 69 chr12 30803612 30803713 -112982742 + L2 LINE L2 2927 3021 -251 523 353 140 25 chr12 30804195 30804824 -112981631 - L2 LINE L2 -583 2731 2031 5694 228 48 51 chr12 30804851 30807078 -112979377 + L1M4 LINE L1 3267 5481 -693 2252 126 0 0 chr12 30807078 30807388 -112979067 + AluSx SINE Alu 1 310 -2 5694 228 48 51 chr12 30807388 30807490 -112978965 + L1M4 LINE L1 5481 5582 -592 2113 106 0 33 chr12 30807490 30807793 -112978662 + AluSq SINE Alu 21 313 0 1172 259 11 32 chr12 30807793 30808079 -112978376 - L1MCc LINE L1 -6043 380 102 180 0 0 0 chr12 30808079 30808099 -112978356 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1172 259 11 32 chr12 30808099 30808183 -112978272 - L1MCc LINE L1 -6321 102 18 733 273 139 5 chr12 30808184 30808631 -112977824 - L1MEc LINE L1 -2696 3519 3013 * 14401 187 11 22 chr12 30808629 30808780 -112977675 - L1PA15 LINE L1 -5 6811 6660 2185 115 3 0 chr12 30808780 30809085 -112977370 - AluSp SINE Alu -2 311 6 14401 187 11 22 chr12 30809085 30810270 -112976185 - L1PA15 LINE L1 -156 6660 5464 2128 149 25 0 chr12 30810270 30810625 -112975830 - THE1B LTR MaLR 0 364 1 14401 187 11 22 chr12 30810625 30813354 -112973101 - L1PA15 LINE L1 -1352 5464 2778 4738 52 2 0 chr12 30813338 30814249 -112972206 - L1PA5 LINE L1 -457 5697 4785 * 3697 48 0 2 chr12 30814249 30814691 -112971764 + L1PA5 LINE L1 5689 6141 -13 2893 249 42 11 chr12 30814696 30815747 -112970708 + L1M4 LINE L1 2277 3360 -2786 5177 223 16 22 chr12 30815749 30817415 -112969040 - L1PA15 LINE L1 -3999 2798 1123 1322 259 84 50 chr12 30817433 30817655 -112968800 - L1MEc LINE L1 -3198 3017 2804 1869 105 72 56 chr12 30817655 30817960 -112968495 - AluSg SINE Alu 0 310 1 1322 259 84 50 chr12 30817960 30818474 -112967981 - L1MEc LINE L1 -3411 2804 2256 621 260 33 70 chr12 30818488 30818758 -112967697 - L1MEc LINE L1 -4192 2204 1958 2133 98 28 0 chr12 30818758 30819043 -112967412 - AluSc SINE Alu -7 302 10 621 260 33 70 chr12 30819043 30819256 -112967199 - L1MEc LINE L1 -4438 1958 1739 1442 176 17 0 chr12 30819274 30819513 -112966942 + MER2 DNA MER2_type 1 243 -102 929 195 90 0 chr12 30819516 30819716 -112966739 - LTR9B LTR ERV1 0 644 427 2002 114 0 24 chr12 30871237 30871458 -112914997 - AluSx SINE Alu 0 352 140 1769 134 7 20 chr12 30871458 30871757 -112914698 - AluY SINE Alu -14 297 3 2002 114 0 24 chr12 30871757 30871893 -112914562 - AluSx SINE Alu -212 140 2 647 169 7 84 chr12 30871894 30872036 -112914419 - MER57-int LTR ERV1 -1582 5955 5825 6084 180 35 43 chr12 30872283 30873700 -112912755 - MER57-int LTR ERV1 -1327 3553 2151 182 299 104 13 chr12 30873707 30873784 -112912671 - L2 LINE L2 -23 3249 3166 1856 179 75 16 chr12 30875111 30875540 -112910915 - Charlie1 DNA MER1_type 0 2761 2308 453 208 67 8 chr12 30875536 30875656 -112910799 - Charlie1 DNA MER1_type -2591 170 44 * 2563 204 102 33 chr12 30876532 30877207 -112909248 + MER72 LTR ERV1 1 722 0 285 328 74 33 chr12 30877220 30877397 -112909058 + L2 LINE L2 2901 3060 -212 188 325 73 31 chr12 30878095 30878286 -112908169 + L2 LINE L2 1902 2100 -1214 260 345 90 0 chr12 30878355 30878500 -112907955 + MIR3 SINE MIR 36 193 -15 519 298 60 52 chr12 30878654 30879037 -112907418 + L1ME4a LINE L1 5528 5913 -208 739 323 75 52 chr12 30879727 30880310 -112906145 + L3 LINE CR1 263 859 -718 761 303 64 49 chr12 30881166 30881575 -112904880 - L2 LINE L2 -76 3237 2823 338 309 33 66 chr12 30883698 30883879 -112902576 - MIR SINE MIR -12 250 76 478 226 157 19 chr12 30883954 30884113 -112902342 + MER5A DNA MER1_type 9 189 0 632 216 68 14 chr12 30885910 30886058 -112900397 + MIR SINE MIR 57 212 -50 1129 78 0 0 chr12 30886326 30886468 -112899987 - HERV9 LTR ERV1 -6416 1983 1842 16093 100 15 8 chr12 30886644 30889106 -112897349 - HERV9 LTR ERV1 -1935 503 2 366 204 31 20 chr12 30889109 30889207 -112897248 - LTR30 LTR ERV1 -80 642 544 4963 125 66 74 chr12 30889207 30890328 -112896127 - pTR5 LTR ERV1 -413 2025 741 1762 142 45 7 chr12 30890535 30890697 -112895758 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30890697 30890744 -112895711 + (TG)n Simple_repeat Simple_repeat 2 48 0 1762 142 45 7 chr12 30890744 30890870 -112895585 - AluSx SINE Alu -189 123 3 1961 129 10 20 chr12 30891202 30891497 -112894958 - AluSx SINE Alu -20 292 1 388 289 70 7 chr12 30891517 30891659 -112894796 + Tigger8 DNA MER2_type 83 233 -433 277 282 26 122 chr12 30891713 30891869 -112894586 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30892578 30892600 -112893855 + AT_rich Low_complexity Low_complexity 1 22 0 14348 157 63 34 chr12 30892804 30896436 -112890019 - MER109 Unknown Unknown 0 2432 578 2369 86 0 0 chr12 30896436 30896726 -112889729 + AluSc SINE Alu 1 290 -19 14348 157 63 34 chr12 30896726 30897321 -112889134 - MER109 Unknown Unknown -1854 578 1 305 241 69 9 chr12 30897425 30897541 -112888914 - MER109 Unknown Unknown -1831 601 479 383 228 70 0 chr12 30899006 30899120 -112887335 + MLT1F1 LTR MaLR 156 277 -290 522 298 68 10 chr12 30899122 30899414 -112887041 - HAL1 LINE L1 -971 1536 1228 2290 111 0 7 chr12 30899567 30899873 -112886582 + AluSq SINE Alu 1 304 -9 448 270 55 59 chr12 30900015 30900252 -112886203 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30900513 30900709 -112885746 + MIR SINE MIR 2 221 -41 388 233 130 13 chr12 30901036 30901302 -112885153 - L1MB8 LINE L1 -5 6161 5841 2142 102 3 20 chr12 30901311 30901616 -112884839 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 30901743 30901985 -112884470 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30902546 30902784 -112883671 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30902824 30902885 -112883570 + MER5B DNA MER1_type 8 65 -113 382 284 31 21 chr12 30902926 30903119 -112883336 - L1ME3 LINE L1 -519 5651 5461 2430 90 0 0 chr12 30903205 30903516 -112882939 - AluY SINE Alu 0 311 1 329 274 204 22 chr12 30903613 30903883 -112882572 + Tigger8 DNA MER2_type 206 524 -142 188 200 20 40 chr12 30904234 30904284 -112882171 + L2 LINE L2 3265 3313 0 2132 94 63 0 chr12 30904409 30904696 -112881759 + AluSg SINE Alu 1 305 -5 3170 120 93 9 chr12 30904990 30905571 -112880884 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30905970 30906191 -112880264 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30906242 30906411 -112880044 + GA-rich Low_complexity Low_complexity 3 166 0 277 213 40 0 chr12 30906700 30906775 -112879680 + MER116 DNA Mariner 1 78 -2 2220 119 0 3 chr12 30908261 30908572 -112877883 + AluSg SINE Alu 1 310 0 265 229 0 0 chr12 30908584 30908645 -112877810 - MER116 DNA Mariner -16 64 4 41811 39 2 4 chr12 30909833 30915995 -112870460 - L1PA3 LINE L1 -1 6154 2 1249 231 7 50 chr12 30916383 30916682 -112869773 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30917022 30917057 -112869398 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30917184 30917213 -112869242 + (CA)n Simple_repeat Simple_repeat 2 30 0 2104 97 17 21 chr12 30917543 30917833 -112868622 - AluSx SINE Alu -8 304 16 264 258 148 62 chr12 30917903 30918159 -112868296 - L1ME LINE L1 -315 5806 5529 280 288 29 14 chr12 30918163 30918302 -112868153 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30918366 30918390 -112868065 + AT_rich Low_complexity Low_complexity 1 24 0 293 261 14 0 chr12 30918932 30919001 -112867454 - MER5B DNA MER1_type -1 177 108 3929 197 85 56 chr12 30919010 30920724 -112865731 + L1MD1 LINE L1 4295 6072 -170 2046 92 7 35 chr12 30920724 30921007 -112865448 + AluSx SINE Alu 32 306 -6 3929 197 85 56 chr12 30921007 30921178 -112865277 + L1MD1 LINE L1 6072 6236 -6 360 300 58 0 chr12 30921213 30921283 -112865172 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30921283 30921333 -112865122 + (TG)n Simple_repeat Simple_repeat 2 51 0 360 300 58 0 chr12 30921333 30921382 -112865073 - MER5B DNA MER1_type -132 46 1 409 284 42 0 chr12 30921648 30921743 -112864712 - MIR SINE MIR -103 159 61 1412 216 13 23 chr12 30922374 30922680 -112863775 - AluJo SINE Alu -9 303 1 2326 83 0 23 chr12 30922816 30923116 -112863339 - AluY SINE Alu -18 293 1 223 139 0 0 chr12 30923920 30923956 -112862499 - MIR SINE MIR -109 153 118 2958 3 0 0 chr12 30924021 30924339 -112862116 - AluYb8 SINE Alu 0 318 1 3541 97 24 8 chr12 30927487 30927990 -112858465 - MER9 LTR ERVK 0 511 1 609 225 80 14 chr12 30928104 30928242 -112858213 + MIR SINE MIR 6 152 -110 400 236 195 16 chr12 30928254 30928377 -112858078 + MIR SINE MIR 67 211 -51 992 333 75 30 chr12 30928403 30928868 -112857587 + L3 LINE CR1 245 730 -847 551 267 85 49 chr12 30929063 30929310 -112857145 + MIR SINE MIR 7 262 0 378 240 221 26 chr12 30929342 30929496 -112856959 - L3 LINE CR1 -296 1281 1098 240 294 130 20 chr12 30929651 30929797 -112856658 + L2 LINE L2 832 993 -2321 * 357 219 163 56 chr12 30929786 30929946 -112856509 - L2 LINE L2 -1523 1791 1615 601 303 117 9 chr12 30929967 30930317 -112856138 + L2 LINE L2 2224 2611 -703 746 145 125 0 chr12 30930320 30930472 -112855983 + MER3 DNA MER1_type 8 131 -78 293 324 62 44 chr12 30930546 30930771 -112855684 + L2 LINE L2 2717 2945 -369 430 347 83 4 chr12 30930789 30931031 -112855424 - L2 LINE L2 -33 3280 3020 1007 162 11 11 chr12 30931052 30931237 -112855218 + MLT1A1 LTR MaLR 169 353 -12 1747 242 123 2 chr12 30931514 30932027 -112854428 + MER90 LTR ERV1 1 575 0 298 227 15 0 chr12 30932496 30932562 -112853893 + tRNA-Ala-GCG tRNA tRNA 6 72 -3 373 155 0 0 chr12 30933800 30933871 -112852584 - L1PBa LINE L1 -5700 1163 1093 2441 212 68 7 chr12 30933872 30934485 -112851970 - L1PBa LINE L1 -5815 1048 398 245 224 82 94 chr12 30934594 30934682 -112851773 - L1ME4a LINE L1 -2 6119 6032 1748 164 18 11 chr12 30934682 30934968 -112851487 + AluJo SINE Alu 5 292 -20 245 224 82 94 chr12 30934968 30935049 -112851406 - L1ME4a LINE L1 -89 6032 5952 2408 268 186 24 chr12 30935580 30936587 -112849868 - L2 LINE L2 -387 2927 1758 440 261 128 28 chr12 30936609 30936689 -112849766 + L2 LINE L2 3045 3116 -197 2540 121 3 3 chr12 30936689 30937053 -112849402 + THE1B LTR MaLR 1 364 0 440 261 128 28 chr12 30937053 30937183 -112849272 + L2 LINE L2 3116 3276 -37 21 0 0 0 chr12 30937922 30937943 -112848512 + AT_rich Low_complexity Low_complexity 1 21 0 948 174 19 0 chr12 30938734 30938895 -112847560 + FAM SINE Alu 1 164 -11 2274 54 43 0 chr12 30938899 30939175 -112847280 - AluY SINE Alu -21 290 3 315 287 150 40 chr12 30939560 30939807 -112846648 - L1ME4a LINE L1 -217 5904 5631 5747 72 82 1 chr12 30940033 30940797 -112845658 - LTR12 LTR ERV1 0 826 1 353 282 104 91 chr12 30941761 30942310 -112844145 - L1ME4a LINE L1 -1293 4853 4298 980 159 50 125 chr12 30942542 30942926 -112843529 + MER34B LTR ERV1 145 499 -66 249 39 39 39 chr12 30942975 30943027 -112843428 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2421 209 50 15 chr12 30943128 30943670 -112842785 - MER21B LTR ERV1 -125 738 178 237 258 32 32 chr12 30944553 30944615 -112841840 - MIR SINE MIR -64 144 83 7619 26 1 0 chr12 30944670 30946155 -112840300 + L1PA3 LINE L1 4668 6152 -3 22 35 0 0 chr12 30946155 30946184 -112840271 + AT_rich Low_complexity Low_complexity 1 29 0 234 311 99 31 chr12 30949010 30949171 -112837284 - MIR SINE MIR -89 173 2 624 302 46 35 chr12 30949504 30949789 -112836666 + L2 LINE L2 3021 3308 -5 541 197 82 0 chr12 30950707 30950829 -112835626 + FLAM_C SINE Alu 2 133 0 271 182 36 0 chr12 30951070 30951125 -112835330 - L2 LINE L2 -67 3246 3190 583 276 98 66 chr12 30951384 30951553 -112834902 - L2 LINE L2 -18 3295 3133 1812 154 77 3 chr12 30951553 30951864 -112834591 - MER1B DNA MER1_type -3 334 1 583 276 98 66 chr12 30951864 30952060 -112834395 - L2 LINE L2 -180 3133 2918 396 0 0 0 chr12 30952800 30952844 -112833611 + (CA)n Simple_repeat Simple_repeat 2 45 0 2092 88 33 0 chr12 30952902 30953207 -112833248 - L1PA7 LINE L1 -1510 4636 4322 6938 65 0 0 chr12 30953207 30954712 -112831743 + L1PA7 LINE L1 4661 6164 0 218 253 12 60 chr12 30956571 30956654 -112829801 - MIR SINE MIR -7 255 177 2531 261 109 26 chr12 30956814 30957770 -112828685 + L2 LINE L2 597 1631 -1683 308 363 29 23 chr12 30959620 30959791 -112826664 - MIR3 SINE MIR -32 176 5 279 299 103 34 chr12 30960214 30960331 -112826124 + L2 LINE L2 3134 3258 -14 181 355 140 0 chr12 30960819 30960912 -112825543 + L2 LINE L2 3204 3309 -4 2360 93 0 6 chr12 30960913 30961226 -112825229 - AluY SINE Alu 0 311 1 24 0 0 0 chr12 30961233 30961257 -112825198 + AT_rich Low_complexity Low_complexity 1 24 0 357 379 39 0 chr12 30961412 30961565 -112824890 - L2 LINE L2 -283 3030 2872 6703 126 23 9 chr12 30961624 30963305 -112823150 + L1MA3 LINE L1 4600 6305 0 1012 274 66 42 chr12 30963987 30964396 -112822059 + LTR16C LTR ERVL 73 491 0 227 200 0 0 chr12 30965878 30965928 -112820527 + (TA)n Simple_repeat Simple_repeat 1 50 0 393 345 83 49 chr12 30966608 30967125 -112819330 - L2 LINE L2 -11 3261 2728 * 454 303 84 0 chr12 30967107 30967262 -112819193 + MIR SINE MIR 18 185 -77 1163 223 91 22 chr12 30967497 30967815 -112818640 + MER58B DNA MER1_type 1 340 -1 900 158 54 124 chr12 30968786 30969084 -112817371 - THE1C LTR MaLR 0 375 99 3470 47 0 0 chr12 30969352 30969776 -112816679 + L1PA5 LINE L1 5724 6147 -7 21 36 0 0 chr12 30969857 30969885 -112816570 + AT_rich Low_complexity Low_complexity 1 28 0 719 184 42 30 chr12 30970055 30970223 -112816232 + L1ME3A LINE L1 5929 6098 -72 296 175 475 0 chr12 30971309 30971389 -112815066 + MER5A DNA MER1_type 69 186 -3 1639 188 86 21 chr12 30972206 30973004 -112813451 + L1MC3 LINE L1 6492 7542 -243 240 363 30 22 chr12 30973005 30973125 -112813330 - L2 LINE L2 -365 2949 2826 1519 162 48 7 chr12 30973125 30973396 -112813059 + AluJo SINE Alu 5 286 -26 240 363 30 22 chr12 30973396 30973410 -112813045 - L2 LINE L2 -488 2826 2814 361 206 82 31 chr12 30973420 30973517 -112812938 - MER5B DNA MER1_type -1 177 76 233 248 91 8 chr12 30973523 30973644 -112812811 + L1ME4a LINE L1 5821 5951 -219 6564 65 18 8 chr12 30973733 30974612 -112811843 - L1PA8 LINE L1 0 6172 5285 263 360 220 19 chr12 30974874 30975246 -112811209 + L3 LINE CR1 1092 1538 -39 580 217 14 58 chr12 30975724 30975862 -112810593 - L2 LINE L2 0 3313 3182 371 335 77 37 chr12 30976974 30977211 -112809244 + L2 LINE L2 2214 2465 -849 2932 75 75 2 chr12 30977211 30977584 -112808871 + MLT2A1 LTR ERVL 1 408 -36 384 22 0 0 chr12 30977584 30977629 -112808826 + (CA)n Simple_repeat Simple_repeat 2 46 0 2932 75 75 2 chr12 30977629 30977669 -112808786 + MLT2A1 LTR ERVL 408 444 0 371 335 77 37 chr12 30977669 30977703 -112808752 + L2 LINE L2 2465 2496 -818 654 294 65 0 chr12 30977804 30978018 -112808437 + MIR SINE MIR 30 257 -5 374 229 38 46 chr12 30978370 30978501 -112807954 - MER5A DNA MER1_type -28 161 32 593 316 109 0 chr12 30979937 30980250 -112806205 + L1MC4a LINE L1 5539 5885 -1923 504 48 0 0 chr12 30980268 30980331 -112806124 + (CA)n Simple_repeat Simple_repeat 2 64 0 222 364 84 18 chr12 30981095 30981320 -112805135 + L2 LINE L2 2866 3105 -167 366 272 59 22 chr12 30981804 30981940 -112804515 + L1ME4a LINE L1 5975 6115 -6 23 54 0 0 chr12 30982164 30982201 -112804254 + AT_rich Low_complexity Low_complexity 1 37 0 525 42 14 0 chr12 30982201 30982272 -112804183 - MER41A LTR ERV1 -83 471 400 2363 108 0 0 chr12 30983339 30983645 -112802810 - AluSg SINE Alu -4 306 1 263 220 130 10 chr12 30983982 30984082 -112802373 + MER117 DNA MER1_type 5 116 -81 304 212 45 15 chr12 30984101 30984167 -112802288 - L2 LINE L2 0 3313 3246 338 174 81 12 chr12 30984424 30984510 -112801945 + HsTC2 DNA Tc2 11 102 -1796 312 382 109 26 chr12 30984510 30984777 -112801678 - L1MEd LINE L1 -5473 646 358 1075 311 124 31 chr12 30985273 30986141 -112800314 + L2 LINE L2 2358 3303 -10 849 332 88 18 chr12 30986401 30986970 -112799485 - L3 LINE CR1 -112 1465 857 647 197 0 0 chr12 30988039 30988156 -112798299 + FLAM_A SINE Alu 8 124 -18 914 146 251 18 chr12 30988646 30988865 -112797590 + AluSg1 SINE Alu 35 304 -5 2096 92 0 37 chr12 30988876 30989017 -112797438 + AluSx SINE Alu 1 146 -210 2251 60 7 20 chr12 30989017 30989317 -112797138 + AluY SINE Alu 2 297 -14 2096 92 0 37 chr12 30989317 30989542 -112796913 + AluSx SINE Alu 146 356 0 2204 106 6 13 chr12 30991860 30992171 -112794284 + AluSx SINE Alu 1 309 -3 1538 181 47 0 chr12 30993598 30993755 -112792700 - AluJo SINE Alu -23 289 112 230 0 33 0 chr12 30993755 30993785 -112792670 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1538 181 47 0 chr12 30993785 30993903 -112792552 - AluJo SINE Alu -200 112 1 25 0 0 0 chr12 30993903 30993928 -112792527 + AT_rich Low_complexity Low_complexity 1 25 0 1631 180 60 0 chr12 30993943 30994293 -112792162 - L1MA9 LINE L1 -4 6308 5938 371 292 88 15 chr12 30995276 30995413 -112791042 + HAL1 LINE L1 1399 1545 -962 765 282 70 70 chr12 30995424 30996151 -112790304 - L2 LINE L2 -33 3280 2557 1271 255 87 58 chr12 30996180 30996718 -112789737 - L2 LINE L2 -1024 2290 1737 340 242 150 8 chr12 30996744 30996864 -112789591 - HAL1 LINE L1 -944 1563 1427 507 293 134 26 chr12 30996922 30997637 -112788818 - L1MEd LINE L1 -4873 1246 425 1618 198 166 8 chr12 30998078 30998577 -112787878 + L1MA5 LINE L1 5722 6299 -1 1680 167 34 3 chr12 31000512 31000806 -112785649 + AluJb SINE Alu 1 303 -9 423 190 13 0 chr12 31002315 31002394 -112784061 - MER3 DNA MER1_type -129 80 1 2293 94 3 10 chr12 31003189 31003498 -112782957 + AluSx SINE Alu 1 307 -5 235 308 127 59 chr12 31003730 31004156 -112782299 - L2 LINE L2 -1515 1799 1345 23 78 0 0 chr12 31004363 31004414 -112782041 + AT_rich Low_complexity Low_complexity 1 51 0 267 247 0 82 chr12 31004984 31005057 -112781398 - MIR SINE MIR -105 103 37 280 160 0 38 chr12 31006310 31006429 -112780026 + MER5B DNA MER1_type 2 177 -1 593 178 129 61 chr12 31007248 31007325 -112779130 - MER45A DNA AcHobo -1403 178 108 1935 158 0 26 chr12 31007325 31007636 -112778819 + AluJb SINE Alu 1 303 -9 593 178 129 61 chr12 31007636 31007721 -112778734 - MER45A DNA AcHobo -1473 108 5 201 258 48 0 chr12 31008096 31008158 -112778297 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr12 31009122 31009159 -112777296 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 31009209 31009236 -112777219 + AT_rich Low_complexity Low_complexity 1 27 0 1882 118 0 15 chr12 31012129 31012401 -112774054 - AluSx SINE Alu -44 268 1 21 0 0 0 chr12 31012410 31012431 -112774024 + AT_rich Low_complexity Low_complexity 1 21 0 967 179 38 0 chr12 31012511 31012695 -112773760 - MER3 DNA MER1_type -16 193 3 313 253 0 0 chr12 31013176 31013255 -112773200 + MER116 DNA Mariner 1 79 -1 1740 193 14 28 chr12 31013557 31013910 -112772545 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr12 31013939 31013960 -112772495 + AT_rich Low_complexity Low_complexity 1 21 0 790 270 103 11 chr12 31014287 31014713 -112771742 + L2 LINE L2 2684 3156 -157 207 279 16 0 chr12 31014715 31014776 -112771679 + (TATG)n Simple_repeat Simple_repeat 2 63 0 412 270 70 17 chr12 31014833 31014948 -112771507 + L2 LINE L2 3180 3300 -13 219 69 0 0 chr12 31014950 31014979 -112771476 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr12 31015078 31015101 -112771354 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 305 313 77 34 chr12 31016018 31016251 -112770204 - L3 LINE CR1 -30 1547 1218 540 287 25 6 chr12 31016638 31016795 -112769660 + MIR SINE MIR 47 206 -56 180 176 0 0 chr12 31016847 31016881 -112769574 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1663 171 21 7 chr12 31018260 31018541 -112767914 + AluJb SINE Alu 1 285 -27 395 310 43 104 chr12 31018906 31019367 -112767088 + L2 LINE L2 2832 3264 -8 191 235 39 20 chr12 31019490 31019541 -112766914 - MIR SINE MIR -62 200 149 544 152 22 219 chr12 31020418 31020774 -112765681 + L1MC4 LINE L1 7757 8042 0 2301 105 3 0 chr12 31021243 31021539 -112764916 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 31022378 31022401 -112764054 + AT_rich Low_complexity Low_complexity 1 23 0 229 377 9 9 chr12 31022850 31022956 -112763499 - MIR SINE MIR -116 146 41 26 0 0 0 chr12 31023844 31023870 -112762585 + AT_rich Low_complexity Low_complexity 1 26 0 2191 134 0 6 chr12 31025078 31025392 -112761063 - AluSx SINE Alu 0 312 1 297 0 0 0 chr12 31026079 31026112 -112760343 + (TG)n Simple_repeat Simple_repeat 2 34 0 877 254 86 5 chr12 31026234 31026454 -112760001 + MIR SINE MIR 3 240 -22 2090 166 28 18 chr12 31026702 31027094 -112759361 - MER57A LTR ERV1 0 403 8 728 238 55 25 chr12 31027104 31027339 -112759116 - MER57A-int LTR ERV1 -22 7515 7274 713 131 25 0 chr12 31027353 31027475 -112758980 - LTR54B LTR ERV1 -373 125 1 5530 189 26 59 chr12 31027476 31028695 -112757760 - MER57A-int LTR ERV1 -394 7143 5971 2420 99 0 10 chr12 31028695 31029009 -112757446 - AluSx SINE Alu 0 312 2 5530 189 26 59 chr12 31029009 31029152 -112757303 - MER57A-int LTR ERV1 -1566 5971 5825 5470 176 33 39 chr12 31029482 31030816 -112755639 - MER57A-int LTR ERV1 -1327 3553 3408 183 286 104 13 chr12 31030823 31030900 -112755555 - L2 LINE L2 -23 3249 3166 1645 184 75 16 chr12 31032227 31032656 -112753799 - Charlie1 DNA MER1_type 0 2761 2308 399 208 67 8 chr12 31032652 31032772 -112753683 - Charlie1 DNA MER1_type -2591 170 44 * 2327 200 102 33 chr12 31033651 31034326 -112752129 + MER72 LTR ERV1 1 722 0 291 340 32 19 chr12 31034339 31034496 -112751959 + L2 LINE L2 2902 3060 -212 193 345 63 21 chr12 31035214 31035405 -112751050 + L2 LINE L2 1902 2100 -1214 269 345 90 0 chr12 31035474 31035619 -112750836 + MIR3 SINE MIR 36 193 -15 392 302 62 46 chr12 31035773 31036144 -112750311 + L1ME4a LINE L1 5528 5904 -217 772 344 65 38 chr12 31036843 31037424 -112749031 + L3 LINE CR1 263 859 -718 764 315 59 44 chr12 31038280 31038689 -112747766 - L2 LINE L2 -76 3237 2823 359 326 17 50 chr12 31040807 31040988 -112745467 - MIR SINE MIR -12 250 76 480 226 157 19 chr12 31041063 31041222 -112745233 + MER5A DNA MER1_type 9 189 0 221 285 146 15 chr12 31043307 31043437 -112743018 - MIR3 SINE MIR -54 154 8 261 309 40 96 chr12 31043788 31044037 -112742418 - MIR SINE MIR -14 248 14 206 314 29 29 chr12 31044088 31044193 -112742262 + L2 LINE L2 3188 3292 -21 2251 86 3 19 chr12 31044233 31044546 -112741909 + AluYa5 SINE Alu 1 308 -3 437 319 0 0 chr12 31044827 31044940 -112741515 + MIR SINE MIR 11 123 -139 2396 87 0 3 chr12 31045181 31045481 -112740974 - AluSc SINE Alu -10 299 1 237 279 147 23 chr12 31046045 31046174 -112740281 - MER5A DNA MER1_type -6 183 39 2418 81 7 0 chr12 31047487 31047783 -112738672 + AluSq SINE Alu 2 299 -14 401 303 77 39 chr12 31048374 31048597 -112737858 + MIR SINE MIR 33 252 -10 1982 129 26 0 chr12 31048882 31049154 -112737301 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 31049154 31049201 -112737254 + (CA)n Simple_repeat Simple_repeat 1 47 0 431 339 36 27 chr12 31049361 31049589 -112736866 - MIR SINE MIR 0 262 31 1063 92 0 52 chr12 31050284 31050437 -112736018 + FAM SINE Alu 25 169 -16 438 226 101 43 chr12 31051723 31051883 -112734572 + L1ME2 LINE L1 5413 5585 -579 2653 107 0 6 chr12 31051883 31052249 -112734206 + THE1B LTR MaLR 1 364 0 438 226 101 43 chr12 31052249 31052278 -112734177 + L1ME2 LINE L1 5585 5611 -553 343 144 66 0 chr12 31052291 31052458 -112733997 + (TA)n Simple_repeat Simple_repeat 1 178 0 36 53 0 0 chr12 31052458 31052515 -112733940 + AT_rich Low_complexity Low_complexity 1 57 0 208 91 76 0 chr12 31052515 31052581 -112733874 + (TA)n Simple_repeat Simple_repeat 2 72 0 1482 227 75 18 chr12 31052581 31053075 -112733380 + L1ME2 LINE L1 5643 6164 0 434 189 30 113 chr12 31053484 31053702 -112732753 + MER106B DNA MER1_type 29 236 0 522 99 0 0 chr12 31054405 31054486 -112731969 + Alu SINE Alu 231 311 0 189 107 0 0 chr12 31055298 31055326 -112731129 + (T)n Simple_repeat Simple_repeat 1 28 0 879 162 77 121 chr12 31055679 31056018 -112730437 + MER33 DNA MER1_type 1 324 0 437 337 43 0 chr12 31056059 31056222 -112730233 + MIR SINE MIR 2 171 -91 387 236 127 44 chr12 31056686 31056860 -112729595 + MIR SINE MIR 9 191 -62 1330 203 100 8 chr12 31058109 31058370 -112728085 + AluJb SINE Alu 1 285 -27 1171 152 5 11 chr12 31058657 31058841 -112727614 - AluSg/x SINE Alu -9 301 119 5191 36 2 0 chr12 31058851 31059467 -112726988 - L1PA7 LINE L1 -3 6151 5535 370 209 152 0 chr12 31060013 31060118 -112726337 - MER103 DNA DNA -44 122 2 21 36 0 0 chr12 31060718 31060746 -112725709 + AT_rich Low_complexity Low_complexity 1 28 0 252 56 0 0 chr12 31060964 31060991 -112725464 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 -6 2191 96 4 0 chr12 31060991 31061272 -112725183 - AluSq SINE Alu -31 282 1 252 56 0 0 chr12 31061272 31061280 -112725175 + (CAAAAA)n Simple_repeat Simple_repeat 31 38 0 24 67 0 0 chr12 31063875 31063920 -112722535 + AT_rich Low_complexity Low_complexity 1 45 0 925 135 8 0 chr12 31063999 31064132 -112722323 + AluJo SINE Alu 1 134 -178 266 321 46 9 chr12 31064481 31064590 -112721865 - MIR SINE MIR -50 212 100 560 173 19 19 chr12 31064620 31064724 -112721731 + FRAM SINE Alu 60 163 -13 431 241 14 0 chr12 31067054 31067176 -112719279 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 31067255 31067381 -112719074 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 31067658 31068514 -112717941 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 31068518 31068934 -112717521 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 31069087 31069389 -112717066 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 31069422 31069990 -112716465 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 31069990 31070051 -112716404 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 31070051 31070216 -112716239 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 31070220 31070345 -112716110 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 31070410 31070783 -112715672 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 31072738 31072759 -112713696 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 31073772 31073893 -112712562 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 31074084 31074401 -112712054 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 31075094 31075131 -112711324 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 31076934 31077316 -112709139 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 31077495 31077548 -112708907 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 31077913 31077976 -112708479 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 31077989 31078388 -112708067 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 31078605 31078689 -112707766 - MIR SINE MIR -157 105 22 27 0 0 0 chr12 31079330 31079357 -112707098 + AT_rich Low_complexity Low_complexity 1 27 0 635 275 87 29 chr12 31079420 31079771 -112706684 - MER57A LTR ERV1 -6 397 43 1863 86 92 67 chr12 31079795 31080195 -112706260 + LTR14B LTR ERVK 6 608 0 343 167 40 79 chr12 31080602 31080728 -112705727 - L1MB5 LINE L1 -1 6173 6053 23 0 0 0 chr12 31081466 31081489 -112704966 + AT_rich Low_complexity Low_complexity 1 23 0 1369 142 4 16 chr12 31081715 31081969 -112704486 - Tigger4(Zombi) DNA MER2_type 0 2731 2481 851 137 7 34 chr12 31081970 31082116 -112704339 + FLAM_C SINE Alu 1 142 -1 4383 126 3 3 chr12 31082116 31082815 -112703640 - Tigger4(Zombi) DNA MER2_type -244 2487 1789 * 7929 131 32 66 chr12 31082813 31084336 -112702119 - Tigger4(Zombi) DNA MER2_type -1259 1472 1 658 91 27 0 chr12 31084801 31084911 -112701544 + L1MCa LINE L1 663 775 -5651 2963 130 26 2 chr12 31084921 31085450 -112701005 + L1MCa LINE L1 857 1398 -5028 1198 213 49 55 chr12 31085453 31085616 -112700839 - MER50 LTR ERV1 0 734 572 2508 71 0 0 chr12 31085616 31085926 -112700529 + AluY SINE Alu 1 310 -1 1198 213 49 55 chr12 31085926 31086109 -112700346 - MER50 LTR ERV1 -162 572 390 187 231 58 19 chr12 31086417 31086469 -112699986 - MIR SINE MIR -70 192 139 231 286 0 14 chr12 31087428 31087498 -112698957 + MIR3 SINE MIR 137 205 -3 367 376 25 6 chr12 31087640 31087802 -112698653 - MIR SINE MIR -78 184 20 558 143 76 0 chr12 31088084 31088203 -112698252 - L1P LINE L1 -877 5269 5142 3800 142 70 21 chr12 31088203 31088808 -112697647 + L1PA16 LINE L1 5391 6039 -127 2299 115 126 5 chr12 31088808 31089190 -112697265 - MSTA LTR MaLR 0 428 1 3800 142 70 21 chr12 31089190 31089325 -112697130 + L1PA16 LINE L1 6039 6166 0 837 298 81 30 chr12 31089922 31090291 -112696164 - L2 LINE L2 0 3313 2926 1279 230 12 33 chr12 31090483 31090814 -112695641 - MLT2D LTR ERVL 0 414 91 1792 177 11 34 chr12 31092106 31092320 -112694135 + MER7A DNA MER2_type 1 218 -2820 2443 106 43 3 chr12 31092320 31092668 -112693787 - THE1B LTR MaLR -2 362 1 9405 131 63 10 chr12 31092668 31094169 -112692286 - THE1B-int LTR MaLR 0 1580 1 2471 132 3 3 chr12 31094169 31094533 -112691922 - THE1B LTR MaLR 0 364 1 1792 177 11 34 chr12 31094533 31094672 -112691783 + MER7A DNA MER2_type 215 346 0 189 0 0 0 chr12 31095047 31095068 -112691387 + (A)n Simple_repeat Simple_repeat 1 21 0 1658 176 36 15 chr12 31095661 31095990 -112690465 + MLT2C1 LTR ERVL 1 336 -61 324 0 0 0 chr12 31095990 31096026 -112690429 + (TC)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr12 31096025 31096053 -112690402 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 27 29 0 0 chr12 31097082 31097116 -112689339 + AT_rich Low_complexity Low_complexity 1 34 0 630 328 92 10 chr12 31097185 31097478 -112688977 - L3b LINE CR1 -87 1496 1180 601 196 18 0 chr12 31097492 31097604 -112688851 - FLAM_C SINE Alu -22 121 8 2268 69 0 0 chr12 31098473 31098762 -112687693 - L1PA7 LINE L1 -15 6139 5851 357 62 0 0 chr12 31098964 31099012 -112687443 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 103 0 0 chr12 31099419 31099448 -112687007 + (T)n Simple_repeat Simple_repeat 1 29 0 743 190 36 41 chr12 31100064 31100259 -112686196 + L1ME LINE L1 5392 5585 -579 2443 278 172 25 chr12 31100259 31101476 -112684979 - L2 LINE L2 -711 2603 1209 480 133 0 0 chr12 31102842 31102925 -112683530 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 461 240 47 0 chr12 31103953 31104103 -112682352 + L1M4 LINE L1 4464 4620 -1526 577 211 56 0 chr12 31104259 31104401 -112682054 - MLT1B LTR MaLR 0 390 241 304 39 20 20 chr12 31104404 31104455 -112682000 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 26048 33 7 4 chr12 31104455 31108576 -112677879 - L1PA3 LINE L1 -16 6139 2006 853 270 194 8 chr12 31108665 31109100 -112677355 + L2 LINE L2 2801 3311 -2 2131 141 0 6 chr12 31109836 31110148 -112676307 - AluSx SINE Alu -2 310 1 692 281 12 6 chr12 31110558 31110725 -112675730 + MER5A DNA MER1_type 1 168 -21 1003 294 10 17 chr12 31110815 31111107 -112675348 - L2 LINE L2 -5 3308 3019 1305 193 130 25 chr12 31111631 31111984 -112674471 + MLT1B LTR MaLR 1 390 0 27 0 0 0 chr12 31112359 31112386 -112674069 + AT_rich Low_complexity Low_complexity 1 27 0 218 279 0 0 chr12 31112557 31112600 -112673855 - L2 LINE L2 -256 3057 3015 844 272 155 42 chr12 31112903 31113502 -112672953 + L2 LINE L2 1745 2411 -903 254 302 103 0 chr12 31113779 31113905 -112672550 + L2 LINE L2 3166 3304 -9 417 252 14 0 chr12 31113984 31114106 -112672349 - MER20B DNA MER1_type 0 219 93 560 173 19 19 chr12 31116436 31116540 -112669915 - FRAM SINE Alu -13 163 60 266 321 46 9 chr12 31116570 31116679 -112669776 + MIR SINE MIR 100 212 -50 925 135 8 0 chr12 31117028 31117161 -112669294 - AluJo SINE Alu -178 134 1 24 67 0 0 chr12 31117240 31117285 -112669170 + AT_rich Low_complexity Low_complexity 1 45 0 252 56 0 0 chr12 31119880 31119888 -112666567 + (TTTTTG)n Simple_repeat Simple_repeat 3 10 -28 2191 96 4 0 chr12 31119888 31120169 -112666286 + AluSq SINE Alu 1 282 -31 252 56 0 0 chr12 31120169 31120196 -112666259 + (TTTTTG)n Simple_repeat Simple_repeat 9 38 0 21 36 0 0 chr12 31120414 31120442 -112666013 + AT_rich Low_complexity Low_complexity 1 28 0 370 209 152 0 chr12 31121042 31121147 -112665308 + MER103 DNA DNA 2 122 -44 5191 36 2 0 chr12 31121693 31122309 -112664146 + L1PA7 LINE L1 5535 6151 -3 1171 152 5 11 chr12 31122319 31122503 -112663952 + AluSg/x SINE Alu 121 303 -9 1330 203 100 8 chr12 31122790 31123051 -112663404 - AluJb SINE Alu -27 285 1 387 236 127 44 chr12 31124300 31124474 -112661981 - MIR SINE MIR -62 146 9 437 337 43 0 chr12 31124938 31125101 -112661354 - MIR SINE MIR -91 171 2 879 162 77 121 chr12 31125142 31125481 -112660974 - MER33 DNA MER1_type 0 324 1 189 107 0 0 chr12 31125834 31125862 -112660593 + (A)n Simple_repeat Simple_repeat 1 28 0 522 99 0 0 chr12 31126674 31126755 -112659700 - Alu SINE Alu 0 310 230 434 189 30 113 chr12 31127458 31127676 -112658779 - MER106B DNA MER1_type 0 236 29 1482 227 75 18 chr12 31128085 31128579 -112657876 - L1ME2 LINE L1 0 6164 5643 302 158 70 7 chr12 31128579 31128871 -112657584 + (TA)n Simple_repeat Simple_repeat 1 310 0 438 226 101 43 chr12 31128884 31128913 -112657542 - L1ME2 LINE L1 -553 5611 5585 2653 107 0 6 chr12 31128913 31129279 -112657176 - THE1B LTR MaLR 0 364 1 438 226 101 43 chr12 31129279 31129439 -112657016 - L1ME2 LINE L1 -579 5585 5413 1063 92 0 52 chr12 31130725 31130878 -112655577 - FAM SINE Alu -16 169 25 431 339 36 27 chr12 31131573 31131801 -112654654 + MIR SINE MIR 31 262 0 423 0 0 0 chr12 31131961 31132008 -112654447 + (TG)n Simple_repeat Simple_repeat 1 47 0 1982 129 26 0 chr12 31132008 31132280 -112654175 - AluSx SINE Alu -33 279 1 401 303 77 39 chr12 31132565 31132788 -112653667 - MIR SINE MIR -10 252 33 2418 81 7 0 chr12 31133379 31133675 -112652780 - AluSq SINE Alu -14 299 2 237 279 147 23 chr12 31134988 31135117 -112651338 + MER5A DNA MER1_type 39 183 -6 2396 87 0 3 chr12 31135681 31135981 -112650474 + AluSc SINE Alu 1 299 -10 437 319 0 0 chr12 31136222 31136335 -112650120 - MIR SINE MIR -139 123 11 2251 86 3 19 chr12 31136616 31136929 -112649526 - AluYa5 SINE Alu -3 308 1 206 314 29 29 chr12 31136969 31137074 -112649381 - L2 LINE L2 -21 3292 3188 261 309 40 96 chr12 31137125 31137374 -112649081 + MIR SINE MIR 14 248 -14 221 285 146 15 chr12 31137725 31137855 -112648600 + MIR3 SINE MIR 8 154 -54 480 226 157 19 chr12 31139940 31140099 -112646356 - MER5A DNA MER1_type 0 189 9 359 326 17 50 chr12 31140174 31140355 -112646100 + MIR SINE MIR 76 250 -12 764 315 59 44 chr12 31142473 31142882 -112643573 + L2 LINE L2 2823 3237 -76 772 344 65 38 chr12 31143738 31144319 -112642136 - L3 LINE CR1 -718 859 263 392 302 62 46 chr12 31145018 31145389 -112641066 - L1ME4a LINE L1 -217 5904 5528 269 345 90 0 chr12 31145543 31145688 -112640767 - MIR3 SINE MIR -15 193 36 193 345 63 21 chr12 31145757 31145948 -112640507 - L2 LINE L2 -1214 2100 1902 291 340 32 19 chr12 31146666 31146823 -112639632 - L2 LINE L2 -212 3060 2902 2327 200 102 33 chr12 31146836 31147511 -112638944 - MER72 LTR ERV1 0 722 1 399 208 67 8 chr12 31148390 31148510 -112637945 + Charlie1 DNA MER1_type 44 170 -2591 * 1645 184 75 16 chr12 31148506 31148935 -112637520 + Charlie1 DNA MER1_type 2308 2761 0 183 286 104 13 chr12 31150262 31150339 -112636116 + L2 LINE L2 3166 3249 -23 5470 176 33 39 chr12 31150346 31151680 -112634775 + MER57A-int LTR ERV1 3408 5821 -1327 5530 189 26 59 chr12 31152010 31152153 -112634302 + MER57A-int LTR ERV1 5825 5971 -1566 2420 99 0 10 chr12 31152153 31152467 -112633988 + AluSx SINE Alu 2 312 0 5530 189 26 59 chr12 31152467 31153686 -112632769 + MER57A-int LTR ERV1 5971 7143 -394 713 131 25 0 chr12 31153687 31153809 -112632646 + LTR54B LTR ERV1 1 125 -373 728 238 55 25 chr12 31153823 31154058 -112632397 + MER57A-int LTR ERV1 7274 7515 -22 2090 166 28 18 chr12 31154068 31154460 -112631995 + MER57A LTR ERV1 8 403 0 877 254 86 5 chr12 31154708 31154928 -112631527 - MIR SINE MIR -22 240 3 297 0 0 0 chr12 31155050 31155083 -112631372 + (CA)n Simple_repeat Simple_repeat 2 34 0 2191 134 0 6 chr12 31155770 31156084 -112630371 + AluSx SINE Alu 1 312 0 26 0 0 0 chr12 31157292 31157318 -112629137 + AT_rich Low_complexity Low_complexity 1 26 0 229 377 9 9 chr12 31158206 31158312 -112628143 + MIR SINE MIR 41 146 -116 23 0 0 0 chr12 31158761 31158784 -112627671 + AT_rich Low_complexity Low_complexity 1 23 0 2301 105 3 0 chr12 31159623 31159919 -112626536 + AluSx SINE Alu 1 297 -15 544 152 22 219 chr12 31160388 31160744 -112625711 - L1MC4 LINE L1 0 8042 7757 191 235 39 20 chr12 31161621 31161672 -112624783 + MIR SINE MIR 149 200 -62 401 311 43 102 chr12 31161795 31162255 -112624200 - L2 LINE L2 -8 3264 2832 1663 171 21 7 chr12 31162620 31162901 -112623554 - AluJb SINE Alu -27 285 1 180 176 0 0 chr12 31164280 31164314 -112622141 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 540 287 25 6 chr12 31164366 31164523 -112621932 - MIR SINE MIR -56 206 47 305 313 77 34 chr12 31164910 31165143 -112621312 + L3 LINE CR1 1218 1547 -30 186 43 0 0 chr12 31166060 31166083 -112620372 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 219 69 0 0 chr12 31166182 31166211 -112620244 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 412 270 70 17 chr12 31166213 31166328 -112620127 - L2 LINE L2 -13 3300 3180 207 279 16 0 chr12 31166385 31166446 -112620009 + (CATA)n Simple_repeat Simple_repeat 2 63 0 790 270 103 11 chr12 31166448 31166874 -112619581 - L2 LINE L2 -157 3156 2684 21 0 0 0 chr12 31167201 31167222 -112619233 + AT_rich Low_complexity Low_complexity 1 21 0 1740 193 14 28 chr12 31167251 31167604 -112618851 + MER7A DNA MER2_type 1 346 0 313 253 0 0 chr12 31167906 31167985 -112618470 - MER116 DNA Mariner -1 79 1 967 179 38 0 chr12 31168466 31168650 -112617805 + MER3 DNA MER1_type 3 193 -16 21 0 0 0 chr12 31168730 31168751 -112617704 + AT_rich Low_complexity Low_complexity 1 21 0 1882 118 0 15 chr12 31168760 31169032 -112617423 + AluSx SINE Alu 1 268 -44 431 241 14 0 chr12 31172464 31172586 -112613869 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 31172665 31172791 -112613664 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 31173068 31173924 -112612531 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 31173928 31174344 -112612111 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 31174497 31174799 -112611656 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 31174832 31175400 -112611055 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 31175400 31175461 -112610994 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 31175461 31175626 -112610829 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 31175630 31175755 -112610700 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 31175820 31176193 -112610262 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 31178148 31178169 -112608286 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 31179182 31179303 -112607152 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 31179494 31179811 -112606644 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 31180504 31180541 -112605914 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 31182344 31182726 -112603729 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 31182905 31182958 -112603497 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 31183323 31183386 -112603069 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 31183399 31183798 -112602657 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 31184015 31184099 -112602356 - MIR SINE MIR -157 105 22 2602 148 7 15 chr12 31184629 31185287 -112601168 - L1MA9 LINE L1 -608 5704 5050 2416 187 25 25 chr12 31185283 31185849 -112600606 + L1MA9 LINE L1 5710 6275 -37 * 180 347 0 74 chr12 31186470 31186565 -112599890 - MIR3 SINE MIR -12 196 109 584 291 18 44 chr12 31187844 31188071 -112598384 - MIR SINE MIR -13 249 29 521 268 14 0 chr12 31188201 31188339 -112598116 + MER58B DNA MER1_type 202 341 0 1480 179 88 7 chr12 31188991 31189287 -112597168 + AluJb SINE Alu 1 312 0 702 301 50 0 chr12 31189887 31190106 -112596349 - MIR SINE MIR -21 241 12 236 204 0 0 chr12 31193325 31193374 -112593081 + T-rich Low_complexity Low_complexity 1 49 0 17729 28 4 1 chr12 31193377 31196257 -112590198 - L1PA4 LINE L1 -3 6152 3263 1819 151 10 3 chr12 31196257 31196548 -112589907 - AluJo SINE Alu -3 309 17 204 333 69 0 chr12 31196710 31196797 -112589658 - L2 LINE L2 -32 3240 3148 605 291 141 27 chr12 31197430 31197729 -112588726 - L2 LINE L2 -1 3312 2980 261 273 11 57 chr12 31197846 31197860 -112588595 - MIR SINE MIR -157 105 92 3181 102 0 7 chr12 31197860 31198321 -112588134 + MER4C LTR ERV1 5 462 -3 261 273 11 57 chr12 31198321 31198394 -112588061 - MIR SINE MIR -170 92 22 188 244 0 0 chr12 31198677 31198722 -112587733 - MIR SINE MIR -14 248 204 26 30 0 0 chr12 31198773 31198806 -112587649 + AT_rich Low_complexity Low_complexity 1 33 0 371 259 6 28 chr12 31198808 31198919 -112587536 - MIR SINE MIR -61 147 40 751 228 43 0 chr12 31198945 31199107 -112587348 - MER58A DNA MER1_type -40 184 16 2541 96 25 30 chr12 31199119 31199437 -112587018 + LTR56 LTR ERV1 9 327 -118 2137 114 0 0 chr12 31199437 31199759 -112586696 + AluSg SINE Alu 1 322 0 2541 96 25 30 chr12 31199759 31199878 -112586577 + LTR56 LTR ERV1 327 445 0 234 0 0 0 chr12 31200841 31200867 -112585588 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 283 341 81 16 chr12 31201559 31201682 -112584773 + MIR SINE MIR 19 149 -59 221 220 0 0 chr12 31202164 31202214 -112584241 + MIR SINE MIR 157 206 -56 2218 116 0 0 chr12 31204945 31205239 -112581216 - AluSx SINE Alu -18 294 1 862 174 0 0 chr12 31206125 31206307 -112580148 - FLAM_C SINE Alu 0 182 1 202 170 38 38 chr12 31206632 31206685 -112579770 - MIR3 SINE MIR 0 208 156 1582 165 55 44 chr12 31207372 31207860 -112578595 - L1M4 LINE L1 -1542 4604 4153 201 147 0 0 chr12 31208814 31208848 -112577607 + (TA)n Simple_repeat Simple_repeat 2 35 0 383 331 0 15 chr12 31208852 31208982 -112577473 + L1MC4 LINE L1 6614 6741 -1301 452 333 59 0 chr12 31210530 31210716 -112575739 + MIR SINE MIR 2 198 -64 2324 71 10 0 chr12 31210771 31211065 -112575390 - AluY SINE Alu -13 298 2 1734 160 28 7 chr12 31211081 31211369 -112575086 - AluJb SINE Alu -18 294 1 378 278 191 12 chr12 31211380 31211542 -112574913 - MIR SINE MIR -71 191 1 180 324 93 19 chr12 31211719 31211827 -112574628 + L2 LINE L2 3198 3313 0 321 288 17 21 chr12 31212378 31212484 -112573971 - MIR SINE MIR -63 145 37 198 71 0 0 chr12 31214504 31214532 -112571923 + (A)n Simple_repeat Simple_repeat 1 28 0 3716 161 11 2 chr12 31214645 31215279 -112571176 - L1PA16 LINE L1 -9 6157 5518 303 106 0 0 chr12 31215795 31215842 -112570613 - Alu SINE Alu -6 294 248 373 285 28 35 chr12 31216160 31216304 -112570151 + L2 LINE L2 3171 3313 0 210 305 57 48 chr12 31216343 31216448 -112570007 - L2 LINE L2 -213 3059 2954 309 248 39 46 chr12 31218931 31219084 -112567371 + LTR33 LTR ERVL 367 518 -3 548 309 94 18 chr12 31220795 31221018 -112565437 - MIR SINE MIR -3 259 20 2002 131 10 30 chr12 31221350 31221647 -112564808 - AluSx SINE Alu -21 291 1 392 248 30 15 chr12 31224945 31225078 -112561377 - MER103 DNA DNA -1 165 31 345 299 5 82 chr12 31225277 31225322 -112561133 - L3b LINE CR1 -216 1367 1320 2395 83 13 3 chr12 31225322 31225623 -112560832 + AluSq SINE Alu 1 304 -9 345 299 5 82 chr12 31225623 31225761 -112560694 - L3b LINE CR1 -263 1320 1198 282 235 0 74 chr12 31226411 31226469 -112559986 - L2 LINE L2 -36 3277 3225 297 0 0 0 chr12 31226469 31226502 -112559953 + (GA)n Simple_repeat Simple_repeat 2 34 0 282 235 0 74 chr12 31226502 31226524 -112559931 - L2 LINE L2 -88 3225 3203 1705 290 54 10 chr12 31226719 31227236 -112559219 - L2 LINE L2 -443 2871 2332 327 261 22 22 chr12 31230364 31230456 -112555999 + MER58B DNA MER1_type 242 333 -8 2169 116 0 0 chr12 31232465 31232758 -112553697 + AluSg SINE Alu 1 293 -17 306 0 0 0 chr12 31232758 31232792 -112553663 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2159 119 17 0 chr12 31232916 31233211 -112553244 - AluSq SINE Alu -12 301 2 738 280 26 0 chr12 31233407 31233639 -112552816 + L2 LINE L2 2819 3056 -257 232 262 66 0 chr12 31233691 31233752 -112552703 + L2 LINE L2 3197 3261 -52 22 35 0 0 chr12 31235044 31235073 -112551382 + AT_rich Low_complexity Low_complexity 1 29 0 486 290 48 65 chr12 31235097 31235345 -112551110 - L2 LINE L2 -51 3262 3019 2294 184 15 36 chr12 31235470 31235751 -112550704 + L1MB5 LINE L1 4886 5171 -1013 2397 93 3 3 chr12 31235751 31236062 -112550393 + AluSq SINE Alu 1 311 -2 2294 184 15 36 chr12 31236062 31236704 -112549751 + L1MB5 LINE L1 5171 5786 -398 1586 197 105 25 chr12 31236716 31237194 -112549261 + MER34 LTR ERV1 27 542 0 1622 214 31 16 chr12 31237195 31237318 -112549137 + L1MB5 LINE L1 5786 5906 -268 3375 110 65 50 chr12 31237318 31237591 -112548864 + MER4B LTR ERV1 1 268 -342 2134 125 7 0 chr12 31237591 31237894 -112548561 - AluSx SINE Alu -7 305 1 3375 110 65 50 chr12 31237894 31237970 -112548485 + MER4B LTR ERV1 268 341 -269 2362 66 3 7 chr12 31237970 31238271 -112548184 + AluY SINE Alu 1 300 -11 3375 110 65 50 chr12 31238271 31238521 -112547934 + MER4B LTR ERV1 341 610 0 1622 214 31 16 chr12 31238521 31238780 -112547675 + L1MB5 LINE L1 5906 6174 0 1920 228 102 24 chr12 31238907 31239105 -112547350 - L1ME1 LINE L1 -5 6972 6791 2261 111 50 25 chr12 31239105 31239467 -112546988 - THE1C LTR MaLR -4 371 1 1920 228 102 24 chr12 31239467 31240518 -112545937 - L1ME1 LINE L1 -186 6791 5613 252 284 23 0 chr12 31240549 31240637 -112545818 - L1ME1 LINE L1 -5442 1417 1328 * 469 295 18 26 chr12 31240614 31240841 -112545614 - L1ME1 LINE L1 -5469 1478 1254 2204 139 13 26 chr12 31241239 31241619 -112544836 + THE1C LTR MaLR 1 375 0 213 333 20 30 chr12 31242419 31242518 -112543937 - L2 LINE L2 0 3272 3175 2549 210 83 10 chr12 31242950 31243550 -112542905 + MER67B LTR ERV1 11 654 -7 242 338 88 0 chr12 31243701 31243781 -112542674 + L3b LINE CR1 1475 1561 -22 255 54 27 0 chr12 31244408 31244445 -112542010 + L1MC5 LINE L1 7189 7226 -735 1538 201 69 70 chr12 31244534 31245205 -112541250 + L1MC5 LINE L1 7226 7895 -66 1847 80 0 0 chr12 31245477 31245702 -112540753 + AluSc SINE Alu 8 232 -77 1461 186 0 52 chr12 31245705 31246012 -112540443 + AluJo SINE Alu 11 301 -11 351 0 0 0 chr12 31246018 31246057 -112540398 + (CA)n Simple_repeat Simple_repeat 2 40 0 3736 159 38 26 chr12 31246990 31247755 -112538700 + LTR1 LTR ERV1 12 785 0 1134 254 88 5 chr12 31248391 31248801 -112537654 + L1ME3A LINE L1 5456 5899 -271 9371 172 152 7 chr12 31249225 31251550 -112534905 + L1PBa LINE L1 8 2670 -4193 3282 80 14 16 chr12 31251544 31251576 -112534879 + L1P5 LINE L1 5278 5309 -842 * 2483 62 0 0 chr12 31251576 31251868 -112534587 + AluY SINE Alu 1 292 -19 192 40 0 0 chr12 31251872 31251897 -112534558 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3282 80 14 16 chr12 31251897 31252374 -112534081 + L1P5 LINE L1 5312 5791 -360 671 42 89 13 chr12 31252425 31252665 -112533790 + (TA)n Simple_repeat Simple_repeat 1 258 0 31 0 0 0 chr12 31252665 31252696 -112533759 + AT_rich Low_complexity Low_complexity 1 31 0 331 264 22 22 chr12 31252699 31252790 -112533665 - L1MC4 LINE L1 -1339 6703 6613 27 0 0 0 chr12 31252790 31252817 -112533638 + AT_rich Low_complexity Low_complexity 1 27 0 659 134 4 18 chr12 31252817 31253044 -112533411 + (TA)n Simple_repeat Simple_repeat 1 223 0 351 0 0 0 chr12 31253044 31253083 -112533372 + (TG)n Simple_repeat Simple_repeat 2 40 0 2320 134 0 8 chr12 31253084 31253457 -112532998 + L1PB1 LINE L1 5782 6151 0 401 324 97 40 chr12 31253780 31254027 -112532428 + L2 LINE L2 2958 3218 -54 190 268 120 84 chr12 31254831 31254973 -112531482 - MIR SINE MIR -84 178 32 204 352 97 34 chr12 31255742 31255918 -112530537 + MER5A DNA MER1_type 1 187 -2 2081 135 10 0 chr12 31255964 31256252 -112530203 - AluSx SINE Alu -21 291 1 287 315 11 22 chr12 31257130 31257219 -112529236 + MER5A DNA MER1_type 98 185 -4 222 37 0 0 chr12 31257330 31257357 -112529098 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1250 197 35 3 chr12 31257605 31257915 -112528540 - MER33 DNA MER1_type 0 324 5 2289 107 10 3 chr12 31259007 31259317 -112527138 - AluSx SINE Alu 0 312 1 284 269 39 0 chr12 31259932 31260062 -112526393 + MLT1J1 LTR MaLR 21 155 -291 486 231 9 131 chr12 31260098 31260419 -112526036 + L1MC5 LINE L1 7630 7911 -50 301 386 43 25 chr12 31261526 31261689 -112524766 - L2 LINE L2 0 3272 3107 2026 139 0 0 chr12 31261713 31261987 -112524468 + AluSx SINE Alu 2 275 -37 41 21 0 0 chr12 31262001 31262049 -112524406 + AT_rich Low_complexity Low_complexity 1 48 0 341 341 20 29 chr12 31262158 31262404 -112524051 - L2 LINE L2 -646 2668 2425 3247 195 11 35 chr12 31262959 31263813 -112522642 + L1MB8 LINE L1 5072 5907 -271 2249 97 10 0 chr12 31263813 31264113 -112522342 - AluSc SINE Alu -6 303 1 3247 195 11 35 chr12 31264113 31264184 -112522271 + L1MB8 LINE L1 5907 5978 -200 248 239 35 42 chr12 31264226 31264368 -112522087 - LTR37B LTR ERV1 -129 339 199 228 135 0 0 chr12 31265252 31265289 -112521166 + (TA)n Simple_repeat Simple_repeat 1 37 0 1637 93 23 0 chr12 31265290 31265504 -112520951 - AluSg/x SINE Alu -10 302 84 1950 137 43 0 chr12 31266756 31267055 -112519400 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 31267245 31267272 -112519183 + AT_rich Low_complexity Low_complexity 1 27 0 2009 161 57 31 chr12 31268162 31268583 -112517872 + MSTB1 LTR MaLR 1 432 0 583 281 103 51 chr12 31268959 31269433 -112517022 + MLT1H LTR MaLR 51 549 0 198 0 0 0 chr12 31269709 31269731 -112516724 + (TA)n Simple_repeat Simple_repeat 1 22 0 699 265 0 29 chr12 31269925 31270129 -112516326 + MIR SINE MIR 17 214 -48 2010 115 3 45 chr12 31270352 31270664 -112515791 - AluSx SINE Alu -9 303 5 2345 75 0 53 chr12 31271302 31271620 -112514835 + AluSg SINE Alu 1 301 -9 2279 116 0 0 chr12 31272447 31272749 -112513706 - AluSq SINE Alu -11 302 1 2289 16 0 0 chr12 31272892 31273147 -112513308 + AluYa5 SINE Alu 55 309 -2 221 0 35 0 chr12 31273151 31273180 -112513275 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 207 254 0 18 chr12 31273478 31273533 -112512922 + (CAA)n Simple_repeat Simple_repeat 2 55 0 362 300 18 0 chr12 31273533 31273643 -112512812 - MIR SINE MIR -27 235 124 318 333 99 25 chr12 31273855 31274017 -112512438 + MIR3 SINE MIR 28 201 -7 2508 147 4 46 chr12 31274571 31275067 -112511388 + MER31A LTR ERV1 1 475 -10 2331 60 31 50 chr12 31275148 31275465 -112510990 - AluY SINE Alu 0 311 1 331 314 186 21 chr12 31276764 31276958 -112509497 - MIR SINE MIR -16 246 21 910 162 16 54 chr12 31277057 31277242 -112509213 - MSTD LTR MaLR 0 396 219 426 172 11 21 chr12 31277287 31277380 -112509075 - MSTD LTR MaLR -336 92 1 2416 101 0 0 chr12 31277387 31277693 -112508762 - AluSx SINE Alu -6 306 1 334 361 37 11 chr12 31278156 31278347 -112508108 - L2 LINE L2 -410 2904 2709 549 268 202 5 chr12 31279243 31279441 -112507014 - MIR SINE MIR -12 250 14 1810 167 0 20 chr12 31279585 31279885 -112506570 + AluJo SINE Alu 7 300 -12 2093 94 0 28 chr12 31279944 31280280 -112506175 + AluSg SINE Alu 1 328 0 835 276 44 18 chr12 31280431 31280656 -112505799 - MIR SINE MIR -10 252 22 31 58 0 0 chr12 31282519 31282571 -112503884 + AT_rich Low_complexity Low_complexity 1 52 0 2427 96 3 0 chr12 31282679 31282991 -112503464 - AluSp SINE Alu 0 313 1 315 320 163 25 chr12 31283070 31283273 -112503182 + MIR SINE MIR 14 244 -18 493 247 11 86 chr12 31283537 31283711 -112502744 + MER91A DNA MER1_type 13 173 -23 242 239 0 0 chr12 31283766 31283812 -112502643 + MER91A DNA MER1_type 145 190 0 445 243 87 0 chr12 31284305 31284408 -112502047 + MER81 DNA DNA 2 113 -1 408 71 0 0 chr12 31284508 31284564 -112501891 + (CA)n Simple_repeat Simple_repeat 2 57 0 181 238 38 62 chr12 31286134 31286214 -112500241 - L3 LINE CR1 -1193 384 307 2821 163 22 40 chr12 31286435 31286989 -112499466 + MER44D DNA MER2_type 4 602 -3 840 249 87 42 chr12 31287194 31287575 -112498880 + MLT1J1 LTR MaLR 2 399 -47 516 257 93 20 chr12 31287934 31288327 -112498128 + L1ME4a LINE L1 5695 6120 -1 208 154 39 0 chr12 31288624 31288676 -112497779 + GA-rich Low_complexity Low_complexity 1 54 0 567 291 29 34 chr12 31288865 31289358 -112497097 + L1MC5 LINE L1 6309 6799 -1015 2145 96 0 4 chr12 31289775 31290055 -112496400 + AluSx SINE Alu 28 306 -6 1504 196 46 78 chr12 31290165 31290730 -112495725 + L1MC5 LINE L1 7015 7561 -400 3360 205 51 30 chr12 31290936 31291982 -112494473 + L1MD2 LINE L1 5240 6357 -2 1793 178 3 7 chr12 31292778 31293076 -112493379 - AluSx SINE Alu -15 297 1 180 232 18 18 chr12 31293653 31293709 -112492746 + MIR SINE MIR 171 226 -36 21 0 0 0 chr12 31294861 31294882 -112491573 + AT_rich Low_complexity Low_complexity 1 21 0 208 293 171 33 chr12 31294959 31295321 -112491134 + L2 LINE L2 1827 2238 -1076 496 266 7 45 chr12 31295374 31295528 -112490927 + MER63A DNA MER1_type 51 198 -12 2166 198 129 25 chr12 31295917 31296572 -112489883 + L1MC4 LINE L1 7081 7819 -223 1387 191 87 61 chr12 31296572 31296950 -112489505 - MLT1B LTR MaLR 0 390 3 2166 198 129 25 chr12 31296950 31297013 -112489442 + L1MC4 LINE L1 7819 7874 -168 213 280 159 28 chr12 31297595 31297702 -112488753 - MIR SINE MIR -52 210 90 240 346 8 38 chr12 31297993 31298126 -112488329 + MLT1J LTR MaLR 266 394 -117 1871 141 170 32 chr12 31298183 31298559 -112487896 - MSTA LTR MaLR 0 428 1 2231 96 24 0 chr12 31298656 31298949 -112487506 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 31299444 31299465 -112486990 + AT_rich Low_complexity Low_complexity 1 21 0 335 78 20 0 chr12 31300068 31300119 -112486336 + (TC)n Simple_repeat Simple_repeat 1 52 0 279 313 62 62 chr12 31300241 31300417 -112486038 - L2 LINE L2 -584 2730 2555 650 267 28 0 chr12 31300571 31300751 -112485704 + MIR SINE MIR 70 254 -8 2469 93 0 0 chr12 31300794 31301106 -112485349 - AluY SINE Alu 0 312 1 227 122 100 22 chr12 31301130 31301220 -112485235 + MER63 DNA MER1_type 870 966 -96 3220 31 3 0 chr12 31301240 31301623 -112484832 - L1PA5 LINE L1 -1 6153 5770 39802 63 2 3 chr12 31301623 31307781 -112478674 - L1PA5 LINE L1 -1 6153 1 3248 159 24 28 chr12 31308661 31309333 -112477122 + L1MA9 LINE L1 5644 6312 0 22 35 0 0 chr12 31309341 31309370 -112477085 + AT_rich Low_complexity Low_complexity 1 29 0 193 233 0 0 chr12 31309809 31309852 -112476603 - MIR3 SINE MIR -3 205 163 535 206 22 3 chr12 31310208 31310359 -112476096 + LTR37A LTR ERV1 291 424 -2 2132 79 25 4 chr12 31310402 31310681 -112475774 + AluY SINE Alu 14 298 -13 591 280 151 0 chr12 31310821 31311007 -112475448 + MIR SINE MIR 7 220 -42 1058 244 171 21 chr12 31311247 31311766 -112474689 + MLT2F LTR ERVL 19 663 0 634 293 120 13 chr12 31311838 31311856 -112474599 - L1ME4a LINE L1 -205 5916 5901 1597 168 72 26 chr12 31311856 31312201 -112474254 - MER46B DNA MER2_type 0 236 1 634 293 120 13 chr12 31312201 31312558 -112473897 - L1ME4a LINE L1 -220 5901 5501 19697 164 31 12 chr12 31314223 31314296 -112472159 + L1MA3 LINE L1 13 83 -7641 2063 158 3 0 chr12 31314296 31314607 -112471848 - AluSx SINE Alu 0 312 1 19697 164 31 12 chr12 31314607 31319056 -112467399 + L1MA3 LINE L1 83 4446 -3278 2388 87 3 0 chr12 31319056 31319365 -112467090 - AluY SINE Alu -1 310 1 19697 164 31 12 chr12 31319365 31321569 -112464886 + L1MA3 LINE L1 4446 6890 -834 7644 23 5 0 chr12 31321569 31323167 -112463288 - L1PA2 LINE L1 -1 6154 4553 19697 164 31 12 chr12 31323167 31323809 -112462646 + L1MA3 LINE L1 6890 7518 -206 2415 166 31 5 chr12 31323809 31324226 -112462229 + MSTA LTR MaLR 1 428 0 8334 172 71 2 chr12 31324226 31325771 -112460684 + MSTA-int LTR MaLR 1 1651 0 1545 176 96 33 chr12 31325774 31326097 -112460358 + MSTA LTR MaLR 7 361 -67 2003 141 28 0 chr12 31326097 31326387 -112460068 - AluSx SINE Alu -9 303 6 1545 176 96 33 chr12 31326387 31326460 -112459995 + MSTA LTR MaLR 361 428 0 912 109 31 109 chr12 31326460 31326525 -112459930 + L1MA3 LINE L1 7514 7583 -141 1902 153 0 0 chr12 31326525 31326800 -112459655 + AluSx SINE Alu 1 275 -37 201 74 0 0 chr12 31326805 31326832 -112459623 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 912 109 31 109 chr12 31326832 31326989 -112459466 + L1MA3 LINE L1 7587 7724 0 7128 55 3 0 chr12 31327761 31329165 -112457290 - L1PA7 LINE L1 -13 6141 4736 214 147 0 0 chr12 31329666 31329700 -112456755 + (CA)n Simple_repeat Simple_repeat 1 34 0 1050 288 66 58 chr12 31329745 31330380 -112456075 - ERVL LTR ERVL -384 5380 4741 1009 219 46 28 chr12 31330429 31330754 -112455701 - L1M4 LINE L1 -1727 4419 4089 371 169 81 105 chr12 31330754 31330878 -112455577 - LTR50 LTR ERVL -280 515 395 674 227 167 35 chr12 31330911 31331193 -112455262 - LTR50 LTR ERVL -474 321 3 207 259 0 0 chr12 31332387 31332441 -112454014 + T-rich Low_complexity Low_complexity 2 55 0 7724 24 9 0 chr12 31332803 31333998 -112452457 - L1PA3 LINE L1 0 6155 4957 1507 231 14 6 chr12 31334011 31334357 -112452098 + MLT1A1 LTR MaLR 1 349 -16 180 0 0 0 chr12 31334358 31334378 -112452077 + (AATAG)n Simple_repeat Simple_repeat 2 21 0 1701 173 75 21 chr12 31334876 31335224 -112451231 + MLT2D LTR ERVL 1 329 -85 189 0 0 0 chr12 31335224 31335245 -112451210 + (TC)n Simple_repeat Simple_repeat 2 22 0 321 26 0 0 chr12 31335247 31335285 -112451170 + (CA)n Simple_repeat Simple_repeat 1 38 0 1701 173 75 21 chr12 31335285 31335320 -112451135 + MLT2D LTR ERVL 329 408 -6 536 280 101 0 chr12 31335321 31335489 -112450966 - MIR SINE MIR -73 189 5 534 220 89 6 chr12 31339544 31339712 -112446743 + MER53 DNA DNA 8 189 0 40691 37 21 1 chr12 31340491 31346515 -112439940 - L1PA3 LINE L1 -4 6151 2 234 267 82 20 chr12 31346816 31346833 -112439622 - L1MA10 LINE L1 -2 6332 6316 2398 242 56 31 chr12 31346833 31348503 -112437952 - L1ME2 LINE L1 -9 6155 4457 2844 123 11 19 chr12 31348549 31349016 -112437439 - Tigger3(Golem) DNA MER2_type -1 3028 2566 4076 156 23 6 chr12 31349016 31349175 -112437280 + Tigger2 DNA MER2_type 2 157 -2561 2093 133 0 0 chr12 31349175 31349476 -112436979 + AluSg SINE Alu 2 302 -8 4076 156 23 6 chr12 31349476 31350046 -112436409 + Tigger2 DNA MER2_type 157 744 -1974 960 184 127 0 chr12 31350113 31350341 -112436114 + Tigger2 DNA MER2_type 2452 2708 -10 556 212 0 9 chr12 31350349 31350462 -112435993 - Tigger3(Golem) DNA MER2_type -2917 112 1 1257 250 93 19 chr12 31350462 31351002 -112435453 - L1ME2 LINE L1 -1710 4436 3847 1904 120 0 11 chr12 31351002 31351277 -112435178 - AluSc SINE Alu -15 294 23 1257 250 93 19 chr12 31351277 31351324 -112435131 - L1ME2 LINE L1 -2299 3847 3805 312 202 12 60 chr12 31351491 31351575 -112434880 + L1M4 LINE L1 3088 3167 -2979 * 840 300 3 18 chr12 31351558 31351888 -112434567 + L1M4 LINE L1 3456 3780 -2366 2342 112 0 0 chr12 31352193 31352505 -112433950 - AluSq SINE Alu 0 313 2 287 305 0 38 chr12 31353293 31353398 -112433057 - MER117 DNA MER1_type 0 197 97 427 229 296 28 chr12 31353436 31353615 -112432840 - MIR SINE MIR -17 245 19 2340 39 42 0 chr12 31353714 31353997 -112432458 + AluY SINE Alu 1 295 -16 2990 177 35 30 chr12 31353997 31354720 -112431735 + MER11A LTR ERVK 359 1266 0 1730 173 0 24 chr12 31355043 31355332 -112431123 - AluJo SINE Alu -30 282 1 2445 74 7 0 chr12 31355340 31355639 -112430816 - AluY SINE Alu -10 301 1 593 141 12 0 chr12 31355640 31355725 -112430730 - AluJo SINE Alu -178 134 49 187 259 74 19 chr12 31356677 31356731 -112429724 + L3b LINE CR1 1291 1347 -236 1057 235 37 7 chr12 31357856 31358128 -112428327 - L1MB7 LINE L1 0 6184 5905 343 350 19 6 chr12 31358130 31358287 -112428168 - L1MEc LINE L1 -4594 1802 1644 248 195 149 35 chr12 31359499 31359586 -112426869 - MIR SINE MIR -5 257 161 411 316 31 25 chr12 31360259 31360455 -112426000 + MER117 DNA MER1_type 1 197 0 874 226 0 87 chr12 31361292 31361487 -112424968 + MER45A DNA AcHobo 1 178 0 219 179 83 24 chr12 31361999 31362083 -112424372 + (CATG)n Simple_repeat Simple_repeat 4 92 0 233 204 88 29 chr12 31362211 31362348 -112424107 + (CATG)n Simple_repeat Simple_repeat 4 148 0 263 245 90 0 chr12 31363694 31363849 -112422606 + (CATG)n Simple_repeat Simple_repeat 2 170 0 309 238 66 20 chr12 31364304 31364455 -112422000 + (CATG)n Simple_repeat Simple_repeat 3 160 0 270 253 71 12 chr12 31364493 31364663 -112421792 + (TATG)n Simple_repeat Simple_repeat 1 180 0 349 222 64 35 chr12 31364687 31364858 -112421597 + (CATG)n Simple_repeat Simple_repeat 2 177 0 421 242 73 0 chr12 31364958 31365123 -112421332 + (CATG)n Simple_repeat Simple_repeat 2 178 0 3119 85 30 7 chr12 31365234 31365670 -112420785 - L1PA8 LINE L1 -33 6139 5694 1715 126 96 11 chr12 31365670 31365941 -112420514 - AluSg SINE Alu -16 294 1 352 241 117 88 chr12 31365951 31366372 -112420083 - MER34C LTR ERV1 -105 437 2 * 632 235 56 51 chr12 31366372 31366564 -112419891 - MER77 LTR ERV1 -357 248 56 1486 264 43 0 chr12 31366668 31367036 -112419419 - MER63 DNA MER1_type -3 1058 675 1424 154 56 79 chr12 31367042 31367221 -112419234 - MER45R DNA AcHobo -414 1167 985 2037 88 40 0 chr12 31367221 31367493 -112418962 + AluSx SINE Alu 1 283 -29 1424 154 56 79 chr12 31367493 31367837 -112418618 - MER45R DNA AcHobo -596 985 586 1133 291 110 20 chr12 31367844 31368335 -112418120 + MER34 LTR ERV1 8 542 0 516 260 68 64 chr12 31368335 31368610 -112417845 - MER45R DNA AcHobo -994 587 312 832 150 36 14 chr12 31368920 31369060 -112417395 - MER31A LTR ERV1 0 485 343 285 81 0 0 chr12 31369056 31369093 -112417362 + MER31A LTR ERV1 118 154 -331 * 772 139 16 0 chr12 31369091 31369213 -112417242 - MER31A LTR ERV1 -361 124 1 2023 109 11 0 chr12 31369654 31369970 -112416485 - AluSc SINE Alu 0 319 1 813 182 0 0 chr12 31370363 31370495 -112415960 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr12 31371295 31371323 -112415132 + AT_rich Low_complexity Low_complexity 1 28 0 382 274 108 110 chr12 31372148 31372674 -112413781 - L1M2 LINE L1 -5713 1136 612 1393 209 7 20 chr12 31374390 31374692 -112411763 - AluJo SINE Alu -9 303 6 191 357 0 0 chr12 31375198 31375254 -112411201 - MIR SINE MIR -13 249 194 4398 191 65 32 chr12 31375381 31376529 -112409926 - L1MD2 LINE L1 -3 6356 5176 1682 263 77 58 chr12 31376854 31377505 -112408950 + MLT2F LTR ERVL 1 663 0 2214 103 7 3 chr12 31378848 31379140 -112407315 + AluSc SINE Alu 1 293 -16 653 289 53 33 chr12 31379239 31379543 -112406912 + L2 LINE L2 2809 3118 -195 308 257 21 78 chr12 31380240 31380381 -112406074 + MER21B LTR ERV1 22 197 -408 * 1300 266 54 67 chr12 31380351 31380982 -112405473 + MER21B LTR ERV1 98 720 -143 248 302 122 29 chr12 31381933 31382072 -112404383 + MER5B DNA MER1_type 27 178 0 1200 330 18 48 chr12 31382083 31382756 -112403699 + ERVL LTR ERVL 1213 1865 -3899 189 0 0 0 chr12 31382800 31382821 -112403634 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 817 278 135 18 chr12 31383723 31384171 -112402284 - Charlie8 DNA MER1_type -2141 276 2 264 349 47 9 chr12 31384253 31384359 -112402096 - L2 LINE L2 -1 3312 3203 272 331 33 26 chr12 31384632 31384783 -112401672 + L2 LINE L2 3158 3309 -4 767 355 103 2 chr12 31384918 31385324 -112401131 - L3 LINE CR1 -725 852 406 257 115 0 39 chr12 31386273 31386325 -112400130 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 383 290 98 22 chr12 31386326 31386509 -112399946 - L1ME LINE L1 -428 5693 5497 276 241 72 0 chr12 31388399 31388482 -112397973 + L1MC4 LINE L1 6615 6703 -1339 2182 124 0 10 chr12 31388989 31389287 -112397168 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 31389306 31389327 -112397128 + AT_rich Low_complexity Low_complexity 1 21 0 1229 281 48 34 chr12 31389408 31389845 -112396610 + Charlie2 DNA MER1_type 32 474 -2308 3525 232 113 12 chr12 31389901 31391113 -112395342 + Charlie2a DNA MER1_type 1528 2861 -1 794 179 0 0 chr12 31391731 31391854 -112394601 - FRAM SINE Alu -27 149 27 1056 189 66 46 chr12 31391856 31392115 -112394340 - MER99 DNA DNA -361 467 204 1732 134 27 30 chr12 31394045 31394343 -112392112 - AluJb SINE Alu -15 297 1 479 227 69 74 chr12 31394762 31394978 -112391477 - L1MC4 LINE L1 -7 8035 7821 232 157 39 0 chr12 31395007 31395058 -112391397 - L1MC4 LINE L1 -413 7629 7577 258 215 17 64 chr12 31395058 31395230 -112391225 + (TATAA)n Simple_repeat Simple_repeat 1 164 0 * 340 150 69 35 chr12 31395211 31395439 -112391016 + (TA)n Simple_repeat Simple_repeat 1 235 0 1884 214 111 94 chr12 31395536 31396017 -112390438 - L1MC4 LINE L1 -502 7540 7036 1733 145 176 0 chr12 31396017 31396313 -112390142 - MER7A DNA MER2_type 0 346 1 1884 214 111 94 chr12 31396313 31396696 -112389759 - L1MC4 LINE L1 -1006 7036 6661 1972 141 7 3 chr12 31396729 31397028 -112389427 - AluJb SINE Alu -12 300 1 2645 84 5 79 chr12 31398204 31398597 -112387858 + THE1B LTR MaLR 1 364 0 969 184 32 22 chr12 31398797 31398982 -112387473 + MER20 DNA MER1_type 30 216 -3 387 276 151 33 chr12 31399883 31400035 -112386420 - MIR SINE MIR -69 193 24 284 190 51 25 chr12 31400816 31400895 -112385560 - Charlie3 DNA MER1_type -300 2410 2330 21 0 0 0 chr12 31401080 31401101 -112385354 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 31402046 31402067 -112384388 + AT_rich Low_complexity Low_complexity 1 21 0 2231 114 0 0 chr12 31402077 31402376 -112384079 + AluSc SINE Alu 1 299 -10 189 371 0 0 chr12 31402479 31402541 -112383914 - L2 LINE L2 -77 3195 3134 396 207 99 9 chr12 31402698 31402809 -112383646 - MIR SINE MIR -113 149 29 509 312 116 5 chr12 31403511 31403899 -112382556 - L1ME2 LINE L1 -280 5884 5454 453 268 122 30 chr12 31403947 31404079 -112382376 + HAL1 LINE L1 2075 2194 -313 240 59 0 0 chr12 31404079 31404113 -112382342 + (TG)n Simple_repeat Simple_repeat 2 35 0 453 268 122 30 chr12 31404113 31404342 -112382113 + HAL1 LINE L1 2194 2469 -38 269 288 0 0 chr12 31404681 31404747 -112381708 + CT-rich Low_complexity Low_complexity 1 66 0 1963 137 46 8 chr12 31405174 31405525 -112380930 - MER93b LTR ERV1 0 373 10 683 285 109 33 chr12 31405696 31406146 -112380309 - L2 LINE L2 -1 3312 2898 297 0 0 0 chr12 31406146 31406179 -112380276 + (TG)n Simple_repeat Simple_repeat 2 34 0 683 285 109 33 chr12 31406179 31406531 -112379924 - L2 LINE L2 -415 2898 2369 294 288 68 34 chr12 31406748 31406866 -112379589 + L2 LINE L2 3147 3268 -4 1655 216 50 12 chr12 31407085 31407502 -112378953 + MER63B DNA MER1_type 4 436 0 581 309 68 9 chr12 31407546 31407766 -112378689 - MIR SINE MIR -27 235 3 579 270 161 5 chr12 31408286 31408497 -112377958 + MIR SINE MIR 7 250 -12 535 222 56 0 chr12 31409249 31409357 -112377098 - L2 LINE L2 0 3313 3200 2213 114 13 0 chr12 31410595 31410901 -112375554 - AluSx SINE Alu -2 310 1 998 197 0 16 chr12 31411132 31411315 -112375140 + AluJo SINE Alu 120 299 -13 883 51 0 17 chr12 31411829 31411947 -112374508 - L1PA4 LINE L1 -2 6153 6038 743 301 36 16 chr12 31412955 31413204 -112373251 + MIR SINE MIR 2 255 -7 21 0 0 0 chr12 31413574 31413595 -112372860 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr12 31413942 31413980 -112372475 + AT_rich Low_complexity Low_complexity 1 38 0 262 323 57 40 chr12 31414634 31414758 -112371697 + MIR SINE MIR 19 144 -64 1254 208 36 40 chr12 31415470 31415572 -112370883 + AluJo SINE Alu 1 102 -210 3062 74 18 48 chr12 31415572 31416030 -112370425 - MLT2A1 LTR ERVL 0 444 1 1254 208 36 40 chr12 31416030 31416230 -112370225 + AluJo SINE Alu 102 302 -10 2026 145 3 0 chr12 31416236 31416533 -112369922 + AluSg SINE Alu 1 298 -12 186 43 0 0 chr12 31416924 31416947 -112369508 + (TG)n Simple_repeat Simple_repeat 2 24 0 299 325 206 5 chr12 31417984 31418178 -112368277 + MIR SINE MIR 13 245 -17 281 295 122 19 chr12 31418394 31418550 -112367905 - MIR SINE MIR -68 194 23 2328 79 23 0 chr12 31418701 31419005 -112367450 - AluSp SINE Alu -2 311 1 2257 112 0 0 chr12 31419524 31419827 -112366628 + AluSg SINE Alu 1 303 -7 758 271 31 26 chr12 31420741 31420970 -112365485 - MIR SINE MIR -4 258 29 572 222 105 0 chr12 31422938 31423091 -112363364 + MIR SINE MIR 31 199 -63 246 278 157 17 chr12 31423113 31423228 -112363227 - MIR SINE MIR -62 146 16 616 35 118 0 chr12 31424605 31424690 -112361765 - MER85 DNA T2_type -44 95 1 1682 143 24 0 chr12 31424791 31425042 -112361413 + AluSq SINE Alu 1 257 -56 506 283 0 8 chr12 31426364 31426484 -112359971 + L2 LINE L2 3194 3312 -1 230 149 75 60 chr12 31426729 31426796 -112359659 - LTR33A LTR ERVL -335 188 121 199 220 40 0 chr12 31426927 31426977 -112359478 - L2 LINE L2 -84 3229 3178 650 224 59 0 chr12 31427033 31427185 -112359270 - MIR SINE MIR -81 181 21 1960 133 3 7 chr12 31427224 31427525 -112358930 - AluSg SINE Alu -10 300 1 186 232 159 14 chr12 31427586 31427655 -112358800 - MER5A DNA MER1_type -80 109 31 199 259 93 0 chr12 31427735 31427789 -112358666 + MIR3 SINE MIR 125 183 -25 946 155 20 0 chr12 31428282 31428456 -112357999 + FRAM SINE Alu 1 171 0 2336 75 0 0 chr12 31428566 31428888 -112357567 + AluY SINE Alu 1 322 0 1102 138 12 0 chr12 31430745 31430905 -112355550 + AluSp SINE Alu 138 299 -14 2192 105 9 29 chr12 31430915 31431230 -112355225 + AluSx SINE Alu 1 309 -3 661 278 50 56 chr12 31431550 31432172 -112354283 - L1ME3A LINE L1 -243 5910 5293 1334 145 100 52 chr12 31432534 31432803 -112353652 - AluJo SINE Alu -30 282 1 471 279 90 60 chr12 31432968 31433291 -112353164 - L1ME3A LINE L1 -1543 4586 4239 2239 125 0 3 chr12 31433291 31433604 -112352851 - AluSx SINE Alu 0 312 1 471 279 90 60 chr12 31433604 31433800 -112352655 - L1ME3A LINE L1 -1890 4239 4051 302 318 19 0 chr12 31433807 31433914 -112352541 - L1ME3A LINE L1 -3316 2813 2705 1959 202 51 20 chr12 31434034 31434540 -112351915 + Charlie1b DNA MER1_type 2 523 0 491 256 107 29 chr12 31434556 31434931 -112351524 - L1ME3A LINE L1 -3516 2613 2210 347 311 69 23 chr12 31435146 31435813 -112350642 - L1MEd LINE L1 -4729 1581 849 307 308 141 32 chr12 31436571 31437068 -112349387 + L1MEd LINE L1 270 820 -5299 305 237 32 38 chr12 31437071 31437203 -112349252 - HsTC2 DNA Tc2 0 1898 35 2377 70 0 0 chr12 31437290 31437574 -112348881 - AluY SINE Alu -11 300 17 1445 289 15 26 chr12 31437574 31438106 -112348349 - L1MEd LINE L1 -5475 644 119 1111 243 55 35 chr12 31438912 31439194 -112347261 - Charlie2 DNA MER1_type 0 2862 2587 2320 58 0 24 chr12 31439194 31439508 -112346947 - AluY SINE Alu 0 307 1 1111 243 55 35 chr12 31439508 31439767 -112346688 - Charlie2 DNA MER1_type -275 2587 2309 364 228 236 31 chr12 31439787 31439914 -112346541 + MIR SINE MIR 1 153 -109 1443 223 0 11 chr12 31439922 31440205 -112346250 + AluJo SINE Alu 3 282 -30 414 0 0 0 chr12 31440208 31440254 -112346201 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2270 112 42 8 chr12 31440258 31440614 -112345841 + THE1C LTR MaLR 8 375 0 334 306 9 0 chr12 31440614 31440722 -112345733 + MIR SINE MIR 154 262 0 1145 231 60 7 chr12 31440731 31441147 -112345308 - Charlie2 DNA MER1_type -569 2293 1856 298 320 40 20 chr12 31441149 31441299 -112345156 - Charlie2 DNA MER1_type -2457 325 173 4221 209 45 47 chr12 31441548 31442056 -112344399 + Charlie1a DNA MER1_type 3 510 -2251 1191 209 85 62 chr12 31442056 31442443 -112344012 - MSTD LTR MaLR 0 396 1 4221 209 45 47 chr12 31442443 31442842 -112343613 + Charlie1a DNA MER1_type 510 908 -1853 1894 176 50 58 chr12 31442842 31442900 -112343555 - MLT2C2 LTR ERVL -3 461 404 402 21 0 0 chr12 31442900 31442947 -112343508 + (TG)n Simple_repeat Simple_repeat 2 48 0 1894 176 50 58 chr12 31442947 31443353 -112343102 - MLT2C2 LTR ERVL -60 404 1 4221 209 45 47 chr12 31443353 31443774 -112342681 + Charlie1a DNA MER1_type 908 1330 -125 2538 74 0 6 chr12 31444206 31444518 -112341937 - AluY SINE Alu -1 310 1 1669 179 15 0 chr12 31444963 31445237 -112341218 + AluJo SINE Alu 1 278 -34 392 150 56 4 chr12 31445253 31445728 -112340727 + (TA)n Simple_repeat Simple_repeat 1 499 0 525 239 69 64 chr12 31446826 31447014 -112339441 - MIR SINE MIR -36 226 38 312 297 18 18 chr12 31448096 31448207 -112338248 + L2 LINE L2 3197 3307 -6 3133 142 17 4 chr12 31450414 31450956 -112335499 - MER34C LTR ERV1 0 585 37 445 326 107 82 chr12 31451115 31451750 -112334705 - L3 LINE CR1 -229 1348 698 180 152 0 0 chr12 31451854 31451887 -112334568 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 658 128 9 9 chr12 31452142 31452251 -112334204 - THE1B LTR MaLR 0 364 256 * 705 84 149 0 chr12 31452249 31452356 -112334099 - THE1B LTR MaLR -241 123 1 2169 120 3 10 chr12 31453070 31453379 -112333076 - AluSx SINE Alu -5 307 1 491 300 131 35 chr12 31453520 31453893 -112332562 + MLT1E LTR MaLR 2 410 -183 235 133 89 0 chr12 31453892 31453937 -112332518 + MLT1E LTR MaLR 519 567 0 * 1281 242 54 19 chr12 31454587 31455016 -112331439 - LTR16B LTR ERVL -17 447 4 201 250 0 0 chr12 31455365 31455409 -112331046 - MIR SINE MIR -2 260 217 1570 140 112 4 chr12 31455742 31456020 -112330435 + AluSg1 SINE Alu 1 308 -1 1075 181 0 0 chr12 31456020 31456191 -112330264 + AluJo/FRAM SINE Alu 128 298 -14 24 32 0 0 chr12 31456191 31456222 -112330233 + AT_rich Low_complexity Low_complexity 1 31 0 1773 130 65 14 chr12 31456300 31456592 -112329863 + AluJb SINE Alu 1 307 -5 821 229 51 21 chr12 31457804 31458270 -112328185 - LTR48B LTR ERV1 -50 594 11 * 1086 219 94 88 chr12 31458262 31458760 -112327695 + MLT2B1 LTR ERVL 12 512 -8 512 288 0 16 chr12 31459098 31459223 -112327232 - L2 LINE L2 -1 3312 3190 324 0 0 0 chr12 31460412 31460448 -112326007 + (TA)n Simple_repeat Simple_repeat 1 36 0 740 208 68 76 chr12 31460574 31460637 -112325818 + MLT1D LTR MaLR 2 64 -403 2190 110 7 0 chr12 31460637 31460938 -112325517 + AluSc SINE Alu 1 303 -6 740 208 68 76 chr12 31460938 31461275 -112325180 + MLT1D LTR MaLR 64 401 -66 2174 94 22 0 chr12 31461275 31461584 -112324871 - AluSq SINE Alu 0 315 1 740 208 68 76 chr12 31461584 31461645 -112324810 + MLT1D LTR MaLR 401 461 -6 1274 152 0 0 chr12 31461732 31461942 -112324513 - MER2 DNA MER2_type -135 210 1 267 165 18 9 chr12 31462552 31462633 -112323822 - L1ME1 LINE L1 -1 6177 6095 2060 108 29 42 chr12 31462637 31463015 -112323440 + L1MA5 LINE L1 5926 6298 -2 474 159 0 0 chr12 31463045 31463133 -112323322 + L1MA5A LINE L1 6208 6295 -2 2109 240 60 14 chr12 31463158 31463824 -112322631 - L1MB7 LINE L1 -93 6091 5395 3187 150 39 73 chr12 31464673 31465388 -112321067 - LTR8 LTR ERV1 0 691 1 326 283 27 53 chr12 31465632 31465819 -112320636 + MARNA DNA Mariner 63 244 -342 1709 87 4 9 chr12 31466672 31466901 -112319554 + AluSg SINE Alu 45 272 -38 340 140 0 0 chr12 31466901 31466958 -112319497 + Alu SINE Alu 241 297 -4 368 227 25 67 chr12 31466958 31467077 -112319378 - MLT1J LTR MaLR -32 479 366 616 340 86 56 chr12 31467558 31468002 -112318453 + L2 LINE L2 2811 3267 -5 246 352 74 43 chr12 31468415 31468577 -112317878 + L2 LINE L2 3101 3267 -5 1256 227 35 27 chr12 31469384 31469754 -112316701 - MER93b LTR ERV1 0 373 1 322 190 38 0 chr12 31469755 31469834 -112316621 - MER65-int LTR ERV1 -395 7142 7061 549 313 10 0 chr12 31469951 31470143 -112316312 - MER65-int LTR ERV1 -536 7001 6808 553 250 73 26 chr12 31470191 31470397 -112316058 - MER65-int LTR ERV1 -252 4684 3777 2531 182 54 19 chr12 31470412 31471000 -112315455 - MER65-int LTR ERV1 -603 4333 3725 250 267 168 0 chr12 31471226 31471327 -112315128 + L2 LINE L2 3193 3310 -3 470 242 13 60 chr12 31471440 31471589 -112314866 - MIR SINE MIR -101 161 20 239 209 45 15 chr12 31472371 31472438 -112314017 - LTR67 LTR ERVL 0 557 489 242 341 90 12 chr12 31473237 31473404 -112313051 + L2 LINE L2 1913 2092 -1222 235 232 29 14 chr12 31473885 31473954 -112312501 + L3 LINE CR1 654 723 -854 1086 314 52 77 chr12 31474030 31474175 -112312280 + L3 LINE CR1 879 1026 -551 2231 119 0 19 chr12 31474175 31474485 -112311970 + AluSx SINE Alu 1 304 -8 1086 314 52 77 chr12 31474485 31474935 -112311520 + L3 LINE CR1 1026 1459 -118 332 312 0 40 chr12 31475050 31475175 -112311280 - L2 LINE L2 -14 3299 3180 402 345 36 36 chr12 31475187 31475381 -112311074 + MER91A DNA MER1_type 1 194 -2 754 295 183 25 chr12 31475383 31475833 -112310622 - L2 LINE L2 -140 3173 2491 279 276 20 20 chr12 31475838 31475936 -112310519 - MLT1K LTR MaLR -81 507 410 1944 144 19 22 chr12 31475989 31476302 -112310153 + AluJo SINE Alu 1 312 0 1890 188 78 37 chr12 31476685 31476786 -112309669 - MLT1D LTR MaLR 0 505 410 1864 146 168 8 chr12 31476786 31477155 -112309300 + MSTA LTR MaLR 1 428 0 1890 188 78 37 chr12 31477155 31477538 -112308917 - MLT1D LTR MaLR -95 410 1 2106 113 3 0 chr12 31478373 31478701 -112307754 - AluSx SINE Alu 0 329 1 818 261 17 6 chr12 31479794 31479974 -112306481 - MER5A DNA MER1_type 0 189 8 753 318 98 19 chr12 31480128 31480506 -112305949 + L2 LINE L2 2902 3309 -4 2354 78 16 16 chr12 31480535 31480841 -112305614 - AluSg SINE Alu -3 307 2 1029 274 81 58 chr12 31481148 31481788 -112304667 - L2 LINE L2 -1 3312 2669 225 229 21 0 chr12 31481896 31481944 -112304511 - L2 LINE L2 -5 3267 3219 241 255 0 85 chr12 31483101 31483195 -112303260 + MIR SINE MIR 32 117 -145 818 259 44 0 chr12 31483208 31483413 -112303042 + MIR SINE MIR 15 228 -34 259 297 131 35 chr12 31483684 31483829 -112302626 + MIR SINE MIR 48 206 -56 209 317 93 58 chr12 31484714 31484919 -112301536 + L3b LINE CR1 1132 1343 -240 263 212 45 15 chr12 31485450 31485516 -112300939 - MLT1J2 LTR MaLR -39 411 344 233 227 40 13 chr12 31485554 31485629 -112300826 - MLT1J2 LTR MaLR -307 143 67 2102 223 82 13 chr12 31485683 31486229 -112300226 - MLT1E LTR MaLR 0 593 10 509 320 33 13 chr12 31486241 31486394 -112300061 - MIR SINE MIR -104 158 3 282 335 87 60 chr12 31486461 31486727 -112299728 - L2 LINE L2 -588 2726 2454 661 306 215 10 chr12 31486761 31487157 -112299298 + L2 LINE L2 2837 3313 0 246 378 39 17 chr12 31487244 31487424 -112299031 - L2 LINE L2 -2418 896 713 333 242 40 40 chr12 31487623 31487722 -112298733 - MIR SINE MIR -82 180 82 257 190 0 52 chr12 31487889 31487947 -112298508 - L2 LINE L2 -1 3312 3258 44 35 0 0 chr12 31488012 31488070 -112298385 + AT_rich Low_complexity Low_complexity 1 58 0 2108 146 0 0 chr12 31489591 31489885 -112296570 - AluSx SINE Alu -18 294 1 2693 170 22 4 chr12 31489896 31490396 -112296059 - L1PB4 LINE L1 0 6156 5648 299 292 108 33 chr12 31490396 31490516 -112295939 - MIR SINE MIR -114 148 20 200 189 0 0 chr12 31491700 31491737 -112294718 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 2363 134 54 66 chr12 31493404 31493698 -112292757 - MER4B LTR ERV1 0 779 483 5380 136 34 54 chr12 31493698 31494791 -112291664 - MER11C LTR ERVK 0 1071 1 2363 134 54 66 chr12 31494791 31495041 -112291414 - MER4B LTR ERV1 -296 483 66 1937 156 0 3 chr12 31495041 31495351 -112291104 + AluSx SINE Alu 3 311 0 2363 134 54 66 chr12 31495351 31495417 -112291038 - MER4B LTR ERV1 -713 66 1 450 285 13 6 chr12 31496535 31496693 -112289762 + HAL1b LINE L1 381 539 -809 256 225 28 0 chr12 31496798 31496869 -112289586 + (TATG)n Simple_repeat Simple_repeat 4 76 0 4476 130 119 1 chr12 31496905 31497644 -112288811 - LTR12 LTR ERV1 0 826 1 668 231 30 50 chr12 31497804 31498103 -112288352 - pTR5 LTR ERV1 -1405 1033 741 1364 195 274 21 chr12 31498389 31498999 -112287456 - LTR50 LTR ERVL -31 764 1 973 286 33 0 chr12 31499098 31499461 -112286994 - L1ME3A LINE L1 -313 5857 5483 1953 256 72 68 chr12 31499621 31499702 -112286753 + L2 LINE L2 2272 2351 -962 1648 71 0 0 chr12 31499702 31499898 -112286557 + AluSc SINE Alu 97 292 -17 1953 256 72 68 chr12 31499898 31500352 -112286103 + L2 LINE L2 2351 2816 -497 2320 97 3 0 chr12 31500352 31500651 -112285804 - AluSg SINE Alu -10 300 1 1953 256 72 68 chr12 31500651 31500989 -112285466 + L2 LINE L2 2816 3151 -162 1206 240 42 35 chr12 31501001 31501434 -112285021 - HsTC2 DNA Tc2 -5 1893 1282 303 203 65 65 chr12 31501421 31501559 -112284896 - HsTC2 DNA Tc2 -1747 151 14 * 532 248 0 16 chr12 31501568 31501697 -112284758 + L2 LINE L2 3153 3279 -34 234 91 0 0 chr12 31501789 31501822 -112284633 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 657 219 0 0 chr12 31502266 31502389 -112284066 - FLAM_A SINE Alu -10 123 1 363 98 0 0 chr12 31503239 31503300 -112283155 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 29 0 0 chr12 31503434 31503468 -112282987 + AT_rich Low_complexity Low_complexity 1 34 0 1313 205 124 54 chr12 31503709 31504079 -112282376 - MSTD LTR MaLR 0 396 1 6819 209 73 43 chr12 31504079 31505761 -112280694 - MSTD-int LTR MaLR 0 1735 4 1567 227 67 8 chr12 31505765 31506139 -112280316 - MSTD LTR MaLR 0 396 1 289 345 134 18 chr12 31508664 31508835 -112277620 + MIR SINE MIR 53 243 -19 235 132 0 0 chr12 31508835 31508873 -112277582 + U3 snRNA snRNA 1 38 -179 26 30 0 0 chr12 31508984 31509017 -112277438 + AT_rich Low_complexity Low_complexity 1 33 0 2738 107 13 2 chr12 31509017 31509411 -112277044 - L1PA15 LINE L1 0 6165 5768 418 246 24 24 chr12 31509551 31509677 -112276778 - LTR67 LTR ERVL 0 557 432 255 316 126 0 chr12 31510231 31510326 -112276129 + L2 LINE L2 3160 3266 -6 2411 77 0 0 chr12 31512072 31512369 -112274086 - AluY SINE Alu -14 297 1 28 29 0 0 chr12 31512552 31512587 -112273868 + AT_rich Low_complexity Low_complexity 1 35 0 207 250 0 19 chr12 31513737 31513789 -112272666 + MER5A DNA MER1_type 45 95 -94 287 50 0 0 chr12 31514124 31514164 -112272291 - L1MA9 LINE L1 -41 6271 6232 337 180 16 0 chr12 31514169 31514230 -112272225 + Tigger5 DNA MER2_type 8 69 -2254 370 241 0 0 chr12 31514235 31514314 -112272141 - Tigger5 DNA MER2_type -3 2320 2242 * 406 205 0 12 chr12 31514304 31514387 -112272068 + Tigger5 DNA MER2_type 2242 2323 0 653 246 39 26 chr12 31514399 31514631 -112271824 - L1MA9 LINE L1 -89 6223 5989 213 327 0 0 chr12 31514643 31514695 -112271760 + polypyrimidine Low_complexity Low_complexity 3 54 0 231 118 0 0 chr12 31514835 31514869 -112271586 + L2 LINE L2 3271 3304 -9 2013 253 61 67 chr12 31514919 31515839 -112270616 + HAL1 LINE L1 863 1778 -729 1809 116 9 55 chr12 31515839 31516121 -112270334 + L1PA16 LINE L1 5853 6119 -47 2436 48 3 0 chr12 31516121 31516415 -112270040 - AluY SINE Alu -12 299 5 1809 116 9 55 chr12 31516415 31516461 -112269994 + L1PA16 LINE L1 6119 6166 0 2013 253 61 67 chr12 31516461 31516622 -112269833 + HAL1 LINE L1 1778 1938 -569 365 147 15 0 chr12 31516747 31516815 -112269640 + HAL1 LINE L1 2321 2389 -118 626 291 25 20 chr12 31517071 31517274 -112269181 - MIR SINE MIR -6 256 53 1773 219 23 92 chr12 31517437 31518144 -112268311 - L1MC4 LINE L1 -571 7471 6814 40658 52 3 1 chr12 31518858 31525029 -112261426 + L1PA5 LINE L1 11 6196 0 24 53 0 0 chr12 31525040 31525078 -112261377 + AT_rich Low_complexity Low_complexity 1 38 0 364 236 160 25 chr12 31525481 31525718 -112260737 + L1M4 LINE L1 3048 3316 -2830 296 127 18 0 chr12 31527090 31527145 -112259310 + GA-rich Low_complexity Low_complexity 1 56 0 5455 122 24 7 chr12 31528117 31529151 -112257304 - L1PA13 LINE L1 -4 6159 5119 613 294 117 58 chr12 31530286 31530873 -112255582 + L2 LINE L2 2716 3313 0 4426 193 30 26 chr12 31531155 31533060 -112253395 + L1MA10 LINE L1 4411 6333 -1 495 286 199 23 chr12 31533921 31534222 -112252233 - L3 LINE CR1 -6 1571 1218 21 71 0 0 chr12 31534413 31534455 -112252000 + AT_rich Low_complexity Low_complexity 1 42 0 498 264 135 0 chr12 31534656 31534804 -112251651 + MIR SINE MIR 47 214 -48 1108 140 19 0 chr12 31534804 31534961 -112251494 - FRAM SINE Alu -19 157 1 2277 139 47 75 chr12 31535252 31535264 -112251191 + L1MA7 LINE L1 5773 5784 -507 216 0 0 0 chr12 31535264 31535288 -112251167 + (CA)n Simple_repeat Simple_repeat 2 25 0 2277 139 47 75 chr12 31535288 31535569 -112250886 + L1MA7 LINE L1 5784 6047 -244 1718 138 3 84 chr12 31535569 31535902 -112250553 - AluJb SINE Alu -2 310 5 2277 139 47 75 chr12 31535902 31536139 -112250316 + L1MA7 LINE L1 6047 6289 -2 1974 148 3 3 chr12 31536391 31536688 -112249767 - AluSx SINE Alu -15 297 1 227 276 129 35 chr12 31537896 31538066 -112248389 + L2 LINE L2 2660 2845 -469 321 297 52 71 chr12 31538184 31538339 -112248116 + L2 LINE L2 3117 3268 -4 27 29 0 0 chr12 31540394 31540428 -112246027 + AT_rich Low_complexity Low_complexity 1 34 0 690 209 50 0 chr12 31540529 31540668 -112245787 + MER21B LTR ERV1 14 159 -704 268 204 19 0 chr12 31540819 31540873 -112245582 + Tigger5 DNA MER2_type 1 55 -2268 285 155 35 0 chr12 31540929 31540987 -112245468 - Tigger5 DNA MER2_type -2235 88 29 8495 47 1 0 chr12 31540989 31541954 -112244501 - LTR5 LTR ERVK -3 966 1 370 202 0 22 chr12 31542002 31542091 -112244364 + Tigger5 DNA MER2_type 2237 2323 0 1105 188 10 0 chr12 31542102 31542310 -112244145 + MER2 DNA MER2_type 1 210 -135 3014 77 36 36 chr12 31542375 31542818 -112243637 - MLT2A1 LTR ERVL -1 443 1 17398 68 6 1 chr12 31542818 31545102 -112241353 - HERVL-A1 LTR ERVL 0 5654 3361 292 280 0 0 chr12 31545449 31545524 -112240931 - MIR SINE MIR -115 147 73 26 30 0 0 chr12 31546009 31546042 -112240413 + AT_rich Low_complexity Low_complexity 1 33 0 213 359 0 0 chr12 31547046 31547110 -112239345 - L2 LINE L2 -12 3260 3197 21 0 0 0 chr12 31547121 31547142 -112239313 + AT_rich Low_complexity Low_complexity 1 21 0 465 295 88 33 chr12 31547199 31547562 -112238893 + L1MCa LINE L1 20 402 -6024 446 215 0 48 chr12 31548529 31548582 -112237873 - MER63 DNA MER1_type -37 1651 1597 1895 127 81 19 chr12 31548582 31548905 -112237550 - MER61A LTR ERV1 0 343 1 446 215 0 48 chr12 31548905 31548967 -112237488 - MER63 DNA MER1_type -91 1597 689 1035 259 49 40 chr12 31549271 31549718 -112236737 + MLT1C LTR MaLR 1 451 -16 2012 205 93 23 chr12 31550710 31551302 -112235153 - MLT1E2 LTR MaLR -2 624 4 1716 173 14 78 chr12 31551354 31551845 -112234610 + L1M2 LINE L1 5167 5630 -682 2035 337 109 23 chr12 31552124 31553363 -112233092 + L3 LINE CR1 185 1529 -48 22 35 0 0 chr12 31554115 31554144 -112232311 + AT_rich Low_complexity Low_complexity 1 29 0 245 308 47 47 chr12 31554543 31554650 -112231805 - MIR SINE MIR -79 129 23 329 321 203 8 chr12 31555768 31556100 -112230355 - L2 LINE L2 0 3313 2876 1321 206 67 50 chr12 31557438 31557797 -112228658 - MLT1A1 LTR MaLR 0 365 1 217 328 37 74 chr12 31558738 31558927 -112227528 - MIR SINE MIR -1 261 80 220 130 78 143 chr12 31559041 31559074 -112227381 + MER5A DNA MER1_type 41 75 -114 4466 48 12 0 chr12 31559074 31559634 -112226821 + L1PA7 LINE L1 5588 6154 0 220 130 78 143 chr12 31559634 31559677 -112226778 + MER5A DNA MER1_type 75 112 -77 1970 118 0 14 chr12 31559681 31560015 -112226440 - AluY SINE Alu 0 330 1 216 224 69 17 chr12 31560290 31560348 -112226107 - L2 LINE L2 -4 3268 3208 1938 115 6 88 chr12 31560776 31561116 -112225339 + AluSx SINE Alu 1 312 0 460 192 128 24 chr12 31561698 31561839 -112224616 - L1ME2 LINE L1 -3 6331 6018 205 229 0 0 chr12 31562330 31562378 -112224077 - MIR SINE MIR 0 262 215 726 242 45 54 chr12 31562396 31562593 -112223862 + MIR SINE MIR 12 208 -54 6857 25 4 1 chr12 31562593 31563407 -112223048 + L1PA3 LINE L1 5340 6155 0 726 242 45 54 chr12 31563407 31563432 -112223023 + MIR SINE MIR 208 232 -30 5223 211 37 28 chr12 31563898 31565984 -112220471 + L1MB8 LINE L1 4040 6162 -16 1872 280 33 23 chr12 31566004 31566903 -112219552 + L1M4 LINE L1 2248 3155 -2991 224 219 16 31 chr12 31566941 31567005 -112219450 + MIR SINE MIR 200 262 0 451 302 58 0 chr12 31567178 31567367 -112219088 - MIR SINE MIR -6 256 57 334 324 74 6 chr12 31569405 31569581 -112216874 + MER5A DNA MER1_type 2 189 0 207 265 73 0 chr12 31569844 31569912 -112216543 - MIR SINE MIR -138 124 52 505 139 0 0 chr12 31570835 31570914 -112215541 - L1MA2 LINE L1 -14 6290 6212 2066 199 13 55 chr12 31571042 31571570 -112214885 - L1MB8 LINE L1 -6 6172 5667 1942 141 6 28 chr12 31571869 31572188 -112214267 - AluSx SINE Alu 0 312 1 234 0 0 0 chr12 31573849 31573875 -112212580 + (TG)n Simple_repeat Simple_repeat 1 26 0 995 192 29 0 chr12 31574542 31574750 -112211705 + L1PA16 LINE L1 5947 6160 -6 187 326 114 8 chr12 31575720 31575852 -112210603 + MIR3 SINE MIR 3 148 -60 292 319 99 0 chr12 31576053 31576144 -112210311 + MIR SINE MIR 29 128 -80 228 86 0 0 chr12 31577278 31577313 -112209142 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 31578157 31578178 -112208277 + AT_rich Low_complexity Low_complexity 1 21 0 334 182 0 15 chr12 31578635 31578701 -112207754 - MER103 DNA DNA -98 68 4 264 30 0 0 chr12 31580397 31580430 -112206025 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 32 57 0 0 chr12 31580956 31581009 -112205446 + AT_rich Low_complexity Low_complexity 1 53 0 288 305 86 9 chr12 31581943 31582048 -112204407 - MIR SINE MIR -50 212 100 22 56 0 0 chr12 31582050 31582086 -112204369 + AT_rich Low_complexity Low_complexity 1 36 0 1905 158 117 28 chr12 31582367 31582760 -112203695 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr12 31583035 31583063 -112203392 + AT_rich Low_complexity Low_complexity 1 28 0 4815 39 2 0 chr12 31583801 31584388 -112202067 - L1P LINE L1 -1189 4957 4370 * 14572 33 11 1 chr12 31584372 31586167 -112200288 + L1P LINE L1 2535 4348 -1798 2013 138 7 0 chr12 31587711 31588007 -112198448 - AluSx SINE Alu -12 300 3 207 0 0 0 chr12 31588819 31588842 -112197613 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2108 114 31 44 chr12 31589908 31590034 -112196421 - THE1A LTR MaLR 0 355 229 1528 88 0 37 chr12 31590034 31590251 -112196204 - AluSc SINE Alu -4 305 97 2108 114 31 44 chr12 31590251 31590484 -112195971 - THE1A LTR MaLR -126 229 1 7533 28 0 0 chr12 31590878 31591800 -112194655 - L1PA4 LINE L1 0 6155 5235 508 274 84 71 chr12 31591893 31592335 -112194120 + MLT1G1 LTR MaLR 113 589 -6 280 213 107 25 chr12 31593658 31593780 -112192675 - L1ME4a LINE L1 -17 6104 5973 903 202 12 0 chr12 31593916 31594089 -112192366 - L1MC1 LINE L1 0 6333 6159 1358 261 67 13 chr12 31594089 31594465 -112191990 + MSTD LTR MaLR 1 396 0 2682 167 59 25 chr12 31594466 31595024 -112191431 - L1MC1 LINE L1 -171 6162 5586 1336 194 14 48 chr12 31595038 31595327 -112191128 - MSTB2 LTR MaLR 0 457 179 2730 224 62 16 chr12 31595327 31596153 -112190302 - L1MC1 LINE L1 -784 5362 4499 1653 173 24 32 chr12 31596153 31596240 -112190215 - MER44D DNA MER2_type -1883 608 522 2055 149 43 0 chr12 31596240 31596589 -112189866 - MER47A DNA MER2_type -1 365 2 1653 173 24 32 chr12 31596589 31596842 -112189613 - MER44D DNA MER2_type -1969 522 1 1291 267 21 16 chr12 31596842 31597269 -112189186 - L1MC1 LINE L1 -1645 4501 4073 3373 79 7 5 chr12 31597442 31597885 -112188570 + MLT2A1 LTR ERVL 1 444 0 1333 209 90 8 chr12 31598257 31598525 -112187930 - AluJo SINE Alu -12 290 1 210 286 63 0 chr12 31600102 31600165 -112186290 - L2 LINE L2 -3 3310 3244 1003 249 39 50 chr12 31600175 31600512 -112185943 - MER87 LTR ERV1 0 541 209 201 355 95 41 chr12 31600677 31601015 -112185440 - L2 LINE L2 -90 3182 2827 1439 190 116 52 chr12 31601223 31601670 -112184785 - MLT1D LTR MaLR -29 476 1 246 229 16 0 chr12 31602132 31602193 -112184262 + HsTC2 DNA Tc2 1 62 -1836 258 32 0 0 chr12 31602223 31602254 -112184201 + (TC)n Simple_repeat Simple_repeat 2 32 0 1796 224 41 20 chr12 31602416 31602906 -112183549 + MLT1D LTR MaLR 6 505 0 279 79 0 0 chr12 31603168 31603206 -112183249 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1484 134 47 83 chr12 31603214 31603490 -112182965 - AluSx SINE Alu -44 268 3 190 326 81 12 chr12 31603800 31603886 -112182569 - MIR SINE MIR -14 248 157 1946 189 43 28 chr12 31604141 31604564 -112181891 + MSTB1 LTR MaLR 4 432 0 269 358 21 0 chr12 31605582 31605677 -112180778 + L2 LINE L2 2963 3059 -213 23 0 0 0 chr12 31606433 31606456 -112179999 + AT_rich Low_complexity Low_complexity 1 23 0 1394 98 23 5 chr12 31606468 31606683 -112179772 - L1MA1 LINE L1 -9 6293 6075 272 313 38 69 chr12 31606864 31606995 -112179460 - MIR SINE MIR -124 138 12 410 286 29 29 chr12 31607486 31607626 -112178829 + L2 LINE L2 3174 3313 0 2254 162 37 46 chr12 31607972 31608454 -112178001 - MLT2B2 LTR ERVL -35 480 3 645 252 82 24 chr12 31608517 31608723 -112177732 - MIR SINE MIR -24 238 21 190 304 18 0 chr12 31609200 31609256 -112177199 + MIR SINE MIR 49 105 -157 263 188 47 0 chr12 31610176 31610240 -112176215 - MIR SINE MIR -93 169 103 216 184 0 0 chr12 31611181 31611219 -112175236 + (ATG)n Simple_repeat Simple_repeat 3 40 0 994 319 74 54 chr12 31611273 31611656 -112174799 - MER115 DNA AcHobo -9 684 281 2169 136 21 21 chr12 31611656 31612031 -112174424 + THE1C LTR MaLR 1 375 0 994 319 74 54 chr12 31612031 31612309 -112174146 - MER115 DNA AcHobo -412 281 10 406 243 171 44 chr12 31612316 31612497 -112173958 - MIR SINE MIR -54 208 5 1819 171 72 16 chr12 31612548 31612923 -112173532 + MSTD LTR MaLR 1 396 0 314 243 90 9 chr12 31614028 31614139 -112172316 + L1MC4 LINE L1 7596 7715 -327 321 211 16 49 chr12 31614226 31614349 -112172106 + L1MC4 LINE L1 7922 8040 -2 8887 191 33 44 chr12 31614796 31617005 -112169450 + L1MDa LINE L1 18 2200 -4340 214 184 0 0 chr12 31617142 31617180 -112169275 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 264 111 0 0 chr12 31618058 31618103 -112168352 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 292 97 56 chr12 31619922 31619994 -112166461 - MIR SINE MIR -166 96 22 211 248 143 29 chr12 31620201 31620306 -112166149 + L2 LINE L2 3188 3304 -9 588 194 0 0 chr12 31620780 31620878 -112165577 - FLAM_A SINE Alu -16 126 29 188 362 0 0 chr12 31621127 31621185 -112165270 - MIR SINE MIR -142 120 63 517 278 106 9 chr12 31621921 31622388 -112164067 + MLT1G1 LTR MaLR 1 595 0 22 0 0 0 chr12 31622418 31622440 -112164015 + AT_rich Low_complexity Low_complexity 1 22 0 1460 185 40 25 chr12 31622982 31623307 -112163148 + MLT1A2 LTR MaLR 45 374 0 186 176 0 0 chr12 31624879 31624930 -112161525 + (CA)n Simple_repeat Simple_repeat 2 52 0 364 280 24 0 chr12 31624949 31625074 -112161381 + (CA)n Simple_repeat Simple_repeat 1 128 0 354 349 6 0 chr12 31625123 31625298 -112161157 + (CA)n Simple_repeat Simple_repeat 1 176 0 25 0 0 0 chr12 31625463 31625488 -112160967 + AT_rich Low_complexity Low_complexity 1 25 0 197 218 127 0 chr12 31626092 31626147 -112160308 + L2 LINE L2 2994 3055 -217 195 335 126 16 chr12 31626962 31627144 -112159311 - L2 LINE L2 -1729 1585 1384 204 329 26 0 chr12 31627397 31627473 -112158982 + L3 LINE CR1 1476 1553 -24 22 56 0 0 chr12 31627728 31627764 -112158691 + AT_rich Low_complexity Low_complexity 1 36 0 1495 236 76 39 chr12 31628188 31628858 -112157597 + L1MC5 LINE L1 7232 7926 -35 957 185 0 0 chr12 31629115 31629293 -112157162 + MLT2B2 LTR ERVL 6 183 -332 999 190 10 77 chr12 31629405 31629817 -112156638 + MLT2B2 LTR ERVL 186 515 0 195 42 0 0 chr12 31630009 31630033 -112156422 + (T)n Simple_repeat Simple_repeat 1 24 0 289 200 45 2 chr12 31631081 31631147 -112155308 + AluSq/x SINE Alu 47 107 -195 374 232 65 77 chr12 31631438 31631593 -112154862 - MIR3 SINE MIR -40 168 16 190 194 0 0 chr12 31632403 31632439 -112154016 + MER5A DNA MER1_type 55 90 -99 556 179 229 0 chr12 31632446 31632586 -112153869 + MER5A DNA MER1_type 18 189 0 282 313 54 45 chr12 31632721 31632833 -112153622 - L2 LINE L2 -14 3258 3146 1648 177 31 6 chr12 31632841 31633163 -112153292 - MER58B DNA MER1_type 0 341 12 839 304 84 56 chr12 31633866 31634428 -112152027 - L2 LINE L2 -267 3005 2423 243 242 34 0 chr12 31635156 31635221 -112151234 + MIR SINE MIR 80 140 -68 2047 133 10 0 chr12 31636486 31636779 -112149676 - AluSc SINE Alu -11 298 3 5319 80 104 4 chr12 31637024 31637773 -112148682 - LTR12 LTR ERV1 0 826 3 2511 88 95 2 chr12 31637773 31638172 -112148283 + LTR7 LTR ERV1 13 448 -2 12453 206 83 68 chr12 31638174 31643245 -112143210 + HERVH LTR ERV1 1 5149 -2564 1291 124 18 5 chr12 31643246 31643463 -112142992 + HERVH LTR ERV1 5600 5819 -1894 2180 87 46 44 chr12 31643463 31643852 -112142603 + HERVH LTR ERV1 7324 7713 0 3003 87 4 32 chr12 31643852 31644313 -112142142 + LTR7 LTR ERV1 1 448 -2 1608 176 13 10 chr12 31644482 31644783 -112141672 - AluJo SINE Alu -9 303 2 1848 186 59 15 chr12 31645179 31645659 -112140796 - L1MA10 LINE L1 -9 6282 5797 1546 186 0 19 chr12 31645953 31646222 -112140233 - AluJo SINE Alu -10 302 39 290 175 79 16 chr12 31646277 31646340 -112140115 - MER103 DNA DNA -96 70 4 26 82 0 0 chr12 31646761 31646822 -112139633 + AT_rich Low_complexity Low_complexity 1 61 0 1949 107 8 0 chr12 31648167 31648429 -112138026 - AluSc SINE Alu -2 307 44 26 30 0 0 chr12 31648474 31648507 -112137948 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31649561 31649589 -112136866 + AT_rich Low_complexity Low_complexity 1 28 0 2090 214 50 53 chr12 31650200 31650568 -112135887 - MLT1E LTR MaLR -8 585 218 1836 100 0 38 chr12 31650568 31650705 -112135750 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31650705 31651004 -112135451 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31651004 31651156 -112135299 + L1MA1 LINE L1 6140 6296 -6 2090 214 50 53 chr12 31651156 31651370 -112135085 - MLT1E LTR MaLR -375 218 5 3956 259 102 32 chr12 31652337 31654234 -112132221 + L2 LINE L2 1206 3313 0 405 341 14 27 chr12 31654718 31655011 -112131444 - ERVL LTR ERVL -4563 1201 913 2328 57 0 0 chr12 31655117 31655396 -112131059 - AluY SINE Alu -32 279 1 6073 95 14 0 chr12 31655398 31656467 -112129988 - L1PA13 LINE L1 -5 6158 5100 3907 129 39 11 chr12 31656462 31657163 -112129292 - L1PA16 LINE L1 -279 6590 5875 20494 87 10 2 chr12 31657201 31660665 -112125790 - L1PA7 LINE L1 -16 6453 2966 8219 114 21 16 chr12 31660667 31661907 -112124548 - L1PA7 LINE L1 -5211 1250 5 2153 205 47 2 chr12 31661914 31662406 -112124049 - L1PA16 LINE L1 -958 5891 5378 * 15818 157 13 19 chr12 31662384 31662977 -112123478 - L1PA16 LINE L1 -4283 2566 1971 2344 122 0 0 chr12 31662977 31663289 -112123166 - AluSx SINE Alu 0 312 1 15818 157 13 19 chr12 31663289 31665274 -112121181 - L1PA16 LINE L1 -4878 1971 2 732 180 90 66 chr12 31665277 31665521 -112120934 - L1M4c LINE L1 -4856 1528 1279 1994 195 25 42 chr12 31665765 31666330 -112120125 + pTR5 LTR ERV1 790 1344 -1094 4647 123 15 126 chr12 31666346 31667270 -112119185 + LTR12 LTR ERV1 5 826 0 1777 271 96 38 chr12 31667272 31668256 -112118199 + L1 LINE L1 2678 3718 -2428 433 115 44 133 chr12 31668668 31668781 -112117674 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31669611 31670100 -112116355 + L2 LINE L2 1557 2052 -1262 510 250 85 94 chr12 31670129 31670601 -112115854 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31670660 31670779 -112115676 - FLAM_A SINE Alu -12 121 4 2547 260 104 18 chr12 31670791 31671847 -112114608 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31671942 31672224 -112114231 - MLT1J LTR MaLR 0 511 230 2131 150 0 0 chr12 31672518 31672824 -112113631 + AluSx SINE Alu 1 306 -6 979 219 44 133 chr12 31673201 31673721 -112112734 + L1MC4 LINE L1 7138 7611 -431 4026 210 32 48 chr12 31673721 31673983 -112112472 + Charlie1a DNA MER1_type 1 266 -2495 3066 90 7 48 chr12 31673983 31674438 -112112017 - L1MA2 LINE L1 0 6304 5869 4026 210 32 48 chr12 31674438 31675173 -112111282 + Charlie1a DNA MER1_type 266 982 -473 232 263 32 63 chr12 31675184 31675279 -112111176 - MIR SINE MIR -7 255 164 1654 177 35 7 chr12 31677242 31677530 -112108925 + AluJb SINE Alu 1 296 -16 767 233 20 0 chr12 31677607 31677757 -112108698 - MER58B DNA MER1_type 0 341 189 2114 118 0 16 chr12 31677765 31678070 -112108385 - AluSx SINE Alu -7 305 6 39770 40 0 2 chr12 31678185 31682940 -112103515 - L1P LINE L1 -1400 4746 1 225 295 26 13 chr12 31683786 31683864 -112102591 - MIR SINE MIR -112 150 72 198 184 41 41 chr12 31684492 31684541 -112101914 + MIR3 SINE MIR 7 55 -153 714 264 62 0 chr12 31684566 31684759 -112101696 - MIR SINE MIR -15 247 43 952 310 61 22 chr12 31684774 31685181 -112101274 + LTR16A LTR ERVL 18 440 -10 4481 164 28 19 chr12 31685317 31686096 -112100359 - MER21B LTR ERV1 -77 786 1 237 261 127 61 chr12 31686190 31686355 -112100100 + L2 LINE L2 1865 2040 -1274 506 335 74 54 chr12 31686359 31686567 -112099888 + L2 LINE L2 2205 2408 -906 1799 157 30 13 chr12 31686567 31686872 -112099583 - AluJb SINE Alu -2 310 1 506 335 74 54 chr12 31686872 31687179 -112099276 + L2 LINE L2 2408 2730 -584 2280 105 3 0 chr12 31687204 31687509 -112098946 - AluSp SINE Alu -7 306 1 294 361 56 0 chr12 31687543 31687651 -112098804 + MIR SINE MIR 2 115 -147 303 268 21 10 chr12 31687706 31687803 -112098652 + MLT1J1 LTR MaLR 54 151 -295 265 121 32 32 chr12 31688142 31688266 -112098189 + (CCCA)n Simple_repeat Simple_repeat 3 126 0 240 149 11 35 chr12 31688309 31688396 -112098059 + C-rich Low_complexity Low_complexity 6 90 0 196 83 0 0 chr12 31688572 31688596 -112097859 + (A)n Simple_repeat Simple_repeat 1 24 0 249 293 0 0 chr12 31688596 31688637 -112097818 + C-rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr12 31689165 31689188 -112097267 + AT_rich Low_complexity Low_complexity 1 23 0 282 262 106 35 chr12 31692556 31692697 -112093758 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31692710 31692749 -112093706 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31693713 31693734 -112092721 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31693761 31693793 -112092662 + AT_rich Low_complexity Low_complexity 1 32 0 3341 160 71 6 chr12 31694110 31694530 -112091925 + L1MA7 LINE L1 5620 6096 -195 225 0 0 0 chr12 31694530 31694555 -112091900 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3341 160 71 6 chr12 31694555 31694765 -112091690 + L1MA7 LINE L1 6096 6291 0 216 0 0 0 chr12 31695323 31695347 -112091108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2783 88 11 0 chr12 31698381 31698732 -112087723 - THE1A LTR MaLR 0 355 1 2627 151 46 12 chr12 31699121 31699533 -112086922 + MSTA LTR MaLR 3 428 0 2603 190 105 70 chr12 31700601 31701507 -112084948 - L1ME2 LINE L1 -3 6161 5188 552 194 15 8 chr12 31701883 31702017 -112084438 - L1ME2 LINE L1 -945 5201 5067 2293 160 29 75 chr12 31702020 31702501 -112083954 + MLT1C LTR MaLR 1 459 -8 184 302 50 126 chr12 31703183 31703354 -112083101 + L2 LINE L2 2933 3063 -209 2667 89 100 8 chr12 31703354 31703745 -112082710 - MSTA LTR MaLR 0 428 2 184 302 50 126 chr12 31703745 31703937 -112082518 + L2 LINE L2 3063 3268 -4 2122 175 5 56 chr12 31704011 31704422 -112082033 - MLT1B LTR MaLR 0 390 1 185 308 77 0 chr12 31704594 31704659 -112081796 - MIR SINE MIR -136 126 57 438 238 229 51 chr12 31704764 31704978 -112081477 - MIR SINE MIR -3 259 8 190 277 36 48 chr12 31704998 31705081 -112081374 - MIR SINE MIR -153 109 28 252 188 0 0 chr12 31706240 31706288 -112080167 + L2 LINE L2 3261 3308 -5 4607 159 33 11 chr12 31706332 31707174 -112079281 - L1MB4 LINE L1 0 6180 5320 1005 228 149 29 chr12 31707277 31707542 -112078913 + L2 LINE L2 2668 2900 -413 2963 195 2 6 chr12 31707542 31708030 -112078425 - MER66B LTR ERV1 0 486 1 1005 228 149 29 chr12 31708030 31708339 -112078116 + L2 LINE L2 2900 3313 0 260 303 50 5 chr12 31708566 31708733 -112077722 - L1ME LINE L1 -458 5712 5534 274 304 40 36 chr12 31708855 31709131 -112077324 + HAL1b LINE L1 661 937 -411 2286 110 0 0 chr12 31709267 31709566 -112076889 - AluSc SINE Alu -10 299 1 1106 172 0 0 chr12 31709601 31709775 -112076680 + AluJb SINE Alu 137 310 -2 366 204 0 0 chr12 31709788 31709876 -112076579 + GA-rich Low_complexity Low_complexity 3 90 0 1288 97 31 35 chr12 31710100 31710328 -112076127 + L1MA10 LINE L1 6101 6327 -7 404 336 58 41 chr12 31710331 31710724 -112075731 + L1M4 LINE L1 2235 2634 -3512 951 196 0 6 chr12 31711534 31711692 -112074763 + FRAM SINE Alu 1 152 -24 5028 72 37 7 chr12 31712302 31713005 -112073450 - L1PA11 LINE L1 0 6174 5451 699 221 22 54 chr12 31713957 31714180 -112072275 - L1ME1 LINE L1 -50 6116 5941 2476 165 24 0 chr12 31714300 31714718 -112071737 - MSTA LTR MaLR 0 428 1 744 206 0 21 chr12 31714750 31714891 -112071564 - FRAM SINE Alu -19 157 20 4060 202 42 31 chr12 31714922 31715028 -112071427 - L1MB7 LINE L1 -54 6130 6027 2343 101 0 0 chr12 31715028 31715336 -112071119 + AluSx SINE Alu 1 308 -4 4060 202 42 31 chr12 31715336 31716353 -112070102 - L1MB7 LINE L1 -157 6027 5023 2283 68 10 3 chr12 31716353 31716647 -112069808 + AluY SINE Alu 1 296 -15 4060 202 42 31 chr12 31716647 31717476 -112068979 - L1MB7 LINE L1 -1161 5023 4204 369 0 0 0 chr12 31717476 31717517 -112068938 + (TG)n Simple_repeat Simple_repeat 1 41 0 2091 94 14 4 chr12 31717517 31717793 -112068662 - AluSx SINE Alu -33 279 1 4060 202 42 31 chr12 31717793 31717882 -112068573 - L1MB7 LINE L1 -1979 4205 4066 1829 183 36 22 chr12 31717893 31718253 -112068202 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr12 31718264 31718300 -112068155 + (TG)n Simple_repeat Simple_repeat 2 37 0 986 185 11 17 chr12 31718306 31718484 -112067971 - AluJo SINE Alu -30 282 106 366 297 8 23 chr12 31718849 31718977 -112067478 - AluJo SINE Alu -176 126 1 321 269 32 0 chr12 31719814 31719907 -112066548 - MIR SINE MIR -64 144 49 384 320 8 8 chr12 31720673 31720795 -112065660 - MER5B DNA MER1_type -6 172 51 551 155 0 10 chr12 31720797 31720894 -112065561 - FLAM_A SINE Alu -15 127 32 349 130 0 0 chr12 31720896 31720950 -112065505 - MER5B DNA MER1_type -123 55 2 395 287 19 101 chr12 31721165 31721343 -112065112 + MIR SINE MIR 2 152 -110 2232 133 2 63 chr12 31721343 31721758 -112064697 - MLT1B LTR MaLR 0 390 1 395 287 19 101 chr12 31721758 31721847 -112064608 + MIR SINE MIR 152 247 -15 512 180 101 36 chr12 31721847 31721986 -112064469 + L1ME2 LINE L1 6015 6162 -2 24 32 0 0 chr12 31722402 31722433 -112064022 + AT_rich Low_complexity Low_complexity 1 31 0 205 256 0 0 chr12 31722697 31722740 -112063715 + (CATA)n Simple_repeat Simple_repeat 2 44 0 248 217 0 0 chr12 31722852 31722912 -112063543 + L1MA8 LINE L1 6060 6119 -172 1956 151 0 3 chr12 31722932 31723223 -112063232 + AluJo SINE Alu 6 295 -17 2378 72 0 7 chr12 31723271 31723577 -112062878 + AluY SINE Alu 1 304 -7 231 262 16 16 chr12 31723647 31723708 -112062747 + L2 LINE L2 3208 3268 -4 1022 188 24 0 chr12 31723816 31724029 -112062426 - MER57A LTR ERV1 -6 397 180 745 273 60 60 chr12 31724158 31724744 -112061711 + PABL_B LTR ERV1 82 667 0 815 129 122 0 chr12 31724748 31724895 -112061560 - MER57A LTR ERV1 -231 172 8 1497 128 23 0 chr12 31724897 31725155 -112061300 + L1MA6 LINE L1 6037 6300 0 25932 34 2 0 chr12 31725181 31729098 -112057357 - L1PA4 LINE L1 -7 6148 2227 1371 202 48 48 chr12 31730241 31730617 -112055838 - MLT1B LTR MaLR 0 390 15 2485 84 0 0 chr12 31731940 31732249 -112054206 + AluY SINE Alu 1 309 -2 193 290 0 16 chr12 31732283 31732345 -112054110 + L2 LINE L2 3249 3309 -4 333 305 73 33 chr12 31732380 31732531 -112053924 + MIR3 SINE MIR 21 177 -31 1982 162 59 0 chr12 31732607 31732995 -112053460 + L1MA4 LINE L1 5882 6292 -8 2508 81 0 17 chr12 31733677 31734025 -112052430 + L1PA8 LINE L1 5828 6169 -3 548 140 0 0 chr12 31734193 31734286 -112052169 + L1PA5 LINE L1 6044 6136 -18 1327 323 42 37 chr12 31734449 31735210 -112051245 - L3 LINE CR1 -378 1199 435 383 20 39 0 chr12 31735560 31735611 -112050844 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 474 188 58 43 chr12 31735789 31735927 -112050528 - L1ME LINE L1 -452 5669 5530 213 347 121 0 chr12 31735973 31736097 -112050358 - L2 LINE L2 -1019 2295 2157 181 241 193 48 chr12 31736101 31736184 -112050271 - MIR3 SINE MIR -26 182 88 189 0 0 0 chr12 31737162 31737183 -112049272 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5226 134 37 32 chr12 31738358 31739276 -112047179 + MER49 LTR ERV1 1 923 0 2525 65 0 0 chr12 31739963 31740273 -112046182 + AluY SINE Alu 1 310 -1 261 156 0 0 chr12 31741309 31741354 -112045101 - Charlie8 DNA MER1_type -2252 165 121 2530 144 56 9 chr12 31741872 31742080 -112044375 - L1MA9 LINE L1 0 6312 6115 7246 121 43 7 chr12 31742080 31743268 -112043187 - Tigger3b DNA MER2_type 0 1231 1 2530 144 56 9 chr12 31743268 31743524 -112042931 - L1MA9 LINE L1 -197 6115 5826 2165 132 0 3 chr12 31743525 31743836 -112042619 + AluSg SINE Alu 1 310 0 228 216 0 0 chr12 31743836 31743887 -112042568 - L1MA9 LINE L1 -378 5793 5743 763 216 0 0 chr12 31743896 31744035 -112042420 + FRAM SINE Alu 18 156 -20 1812 131 19 0 chr12 31744052 31744364 -112042091 - L1MA9 LINE L1 -563 5749 5432 4962 106 31 1 chr12 31744384 31745035 -112041420 - L1PB1 LINE L1 0 6867 6188 189 0 0 0 chr12 31745035 31745056 -112041399 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4962 106 31 1 chr12 31745056 31745180 -112041275 - L1PB1 LINE L1 -679 6188 6069 1492 104 0 0 chr12 31745182 31745383 -112041072 - AluY SINE Alu 0 311 111 903 56 0 0 chr12 31745478 31745585 -112040870 - AluY SINE Alu -204 107 1 9159 211 15 10 chr12 31745585 31747847 -112038608 - L1PB1 LINE L1 -779 6083 3811 437 200 0 0 chr12 31747862 31747947 -112038508 - L1PB1 LINE L1 -6073 790 706 * 11368 184 96 20 chr12 31747937 31751751 -112034704 - L1PBa LINE L1 -2422 4440 302 2366 102 0 0 chr12 31751751 31752054 -112034401 - AluSg SINE Alu -7 303 1 11368 184 96 20 chr12 31752054 31752259 -112034196 - L1PBa LINE L1 -6560 302 114 21 0 0 0 chr12 31752319 31752340 -112034115 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31752400 31752435 -112034020 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31753296 31753401 -112033054 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 31755135 31755558 -112030897 + Tigger2a DNA MER2_type 1 434 0 354 98 0 0 chr12 31755832 31755883 -112030572 + (CA)n Simple_repeat Simple_repeat 1 51 0 251 97 48 16 chr12 31755977 31756039 -112030416 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 31756774 31756885 -112029570 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 31758243 31758346 -112028109 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31758689 31758742 -112027713 + (TA)n Simple_repeat Simple_repeat 2 54 0 997 238 30 5 chr12 31758835 31759081 -112027374 - MIR SINE MIR 0 262 14 1880 146 3 13 chr12 31760165 31760466 -112025989 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31760606 31760901 -112025554 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31760904 31761295 -112025160 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31761738 31762047 -112024408 - AluY SINE Alu 0 311 1 546 231 34 62 chr12 31762853 31763016 -112023439 + MLT1H LTR MaLR 1 80 -450 2080 123 14 3 chr12 31763016 31763309 -112023146 + AluJb SINE Alu 1 296 -16 546 231 34 62 chr12 31763309 31763376 -112023079 + MLT1H LTR MaLR 80 147 -383 4569 225 71 16 chr12 31763514 31764844 -112021611 + L1 LINE L1 2121 3524 -2622 1373 211 4 7 chr12 31764961 31765231 -112021224 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31765606 31765878 -112020577 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31765946 31766037 -112020418 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31766036 31766858 -112019597 + Tigger3b DNA MER2_type 279 1207 -24 399 206 21 21 chr12 31767476 31767573 -112018882 - pTR5 LTR ERV1 -1599 839 743 11045 174 96 14 chr12 31767574 31770244 -112016211 - L1M4 LINE L1 -3473 2909 19 990 203 100 80 chr12 31770268 31770617 -112015838 - MER76 LTR ERV -2 686 331 1875 180 0 0 chr12 31771097 31771391 -112015064 + AluJb SINE Alu 1 294 -18 4912 147 23 50 chr12 31771984 31773073 -112013382 - L1MB3 LINE L1 -1 6182 5122 2475 90 20 0 chr12 31773088 31773434 -112013021 - L1PA13 LINE L1 -17 6146 5794 301 314 122 21 chr12 31774504 31774692 -112011763 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31775039 31775068 -112011387 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31775072 31775229 -112011226 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31775307 31775478 -112010977 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31775594 31775817 -112010638 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31776062 31776213 -112010242 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31776665 31776695 -112009760 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31777342 31777548 -112008907 + L2 LINE L2 3119 3309 -4 2211 105 6 13 chr12 31778052 31778365 -112008090 + AluSx SINE Alu 1 311 -1 545 174 181 7 chr12 31778384 31778522 -112007933 - L1M4b LINE L1 -5907 952 791 1433 207 10 21 chr12 31778622 31778912 -112007543 - AluJo SINE Alu -17 295 9 1608 170 26 42 chr12 31779188 31779538 -112006917 - MSTB2 LTR MaLR -114 319 1 249 183 33 17 chr12 31779656 31779716 -112006739 - L1MC5 LINE L1 -593 7368 7308 246 143 24 24 chr12 31779717 31779759 -112006696 - Alu SINE Alu -39 260 219 846 198 172 104 chr12 31779824 31780306 -112006149 - L1MD3 LINE L1 -788 7173 6671 227 129 29 29 chr12 31780308 31780378 -112006077 + (TA)n Simple_repeat Simple_repeat 2 71 0 1037 199 5 0 chr12 31780565 31780761 -112005694 - L1PA16 LINE L1 -16 6150 5954 2198 100 0 23 chr12 31780784 31781093 -112005362 - AluSq SINE Alu -11 302 1 319 278 101 98 chr12 31781094 31781440 -112005015 - L1MC4a LINE L1 -1227 6581 6235 435 103 0 0 chr12 31781448 31781516 -112004939 + Alu SINE Alu 244 311 0 361 262 218 25 chr12 31781539 31781814 -112004641 - L1MC4a LINE L1 -1651 6157 5830 238 216 144 0 chr12 31781930 31782041 -112004414 + L1MB8 LINE L1 1500 1626 -5233 2235 108 3 0 chr12 31782041 31782337 -112004118 + AluSx SINE Alu 1 297 -15 6422 215 72 11 chr12 31782383 31782817 -112003638 + L1MB8 LINE L1 3846 4252 -2705 200 33 0 33 chr12 31782817 31782847 -112003608 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6422 215 72 11 chr12 31782847 31784363 -112002092 + L1MB8 LINE L1 4252 5914 -1043 1051 145 58 4 chr12 31784365 31784574 -112001881 + AluJb SINE Alu 1 304 -8 3342 167 140 12 chr12 31784575 31785521 -112000934 + L1MB8 LINE L1 5911 6984 -5 2350 58 0 17 chr12 31786824 31787117 -111999338 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31787411 31787440 -111999015 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31788894 31789121 -111997334 + L1MA5A LINE L1 6038 6275 -22 623 210 108 45 chr12 31789466 31789594 -111996861 - MER58 DNA MER1_type -154 187 44 2397 89 3 0 chr12 31789594 31789896 -111996559 + AluSp SINE Alu 1 303 -10 623 210 108 45 chr12 31789896 31789943 -111996512 - MER58 DNA MER1_type -297 44 1 2242 103 13 0 chr12 31790635 31790936 -111995519 + AluSq SINE Alu 1 305 -8 2055 191 30 74 chr12 31792050 31792578 -111993877 + MLT1D LTR MaLR 1 505 0 443 255 43 35 chr12 31792957 31793098 -111993357 + LTR67 LTR ERVL 412 553 -4 1328 262 136 16 chr12 31793164 31793648 -111992807 + MLT1F LTR MaLR 1 542 0 315 278 55 7 chr12 31793894 31794078 -111992377 - MLT1G1 LTR MaLR 0 595 354 7470 32 1 1 chr12 31794802 31795827 -111990628 + L1PA4 LINE L1 5128 6152 -3 27 0 0 0 chr12 31795827 31795854 -111990601 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr12 31795893 31795913 -111990542 + (A)n Simple_repeat Simple_repeat 1 20 0 339 364 64 18 chr12 31795933 31796326 -111990129 - MLT1C LTR MaLR -8 459 49 577 246 72 58 chr12 31796609 31796885 -111989570 - L2 LINE L2 -129 3184 2905 3092 95 51 0 chr12 31796970 31797401 -111989054 - MLT2A2 LTR ERVL 0 453 1 2785 126 7 30 chr12 31797415 31797851 -111988604 + MSTB LTR MaLR 1 426 0 518 247 81 23 chr12 31797888 31798062 -111988393 + MER5A DNA MER1_type 4 187 -2 1826 45 0 18 chr12 31799064 31799284 -111987171 - AluY SINE Alu -10 301 86 203 162 0 27 chr12 31799602 31799639 -111986816 + L3 LINE CR1 1443 1478 -99 1998 126 0 68 chr12 31799704 31800030 -111986425 - AluSx SINE Alu -7 305 2 370 212 12 0 chr12 31800101 31800186 -111986269 + L1 LINE L1 5057 5142 -1004 * 3494 94 5 7 chr12 31800154 31800727 -111985728 + L1P4 LINE L1 5168 5741 -422 306 276 48 35 chr12 31801784 31801929 -111984526 - L1ME3A LINE L1 -203 5967 5821 1985 128 21 0 chr12 31801938 31802226 -111984229 - AluSx SINE Alu -16 296 3 1836 125 0 7 chr12 31802230 31802502 -111983953 - AluSx SINE Alu -9 303 34 18474 155 13 9 chr12 31802502 31802798 -111983657 + L1P LINE L1 2093 2386 -3760 2346 107 0 3 chr12 31802798 31803107 -111983348 + AluY SINE Alu 1 308 -3 18474 155 13 9 chr12 31803107 31806108 -111980347 + L1P LINE L1 2386 5403 -743 1052 112 0 0 chr12 31806108 31806251 -111980204 + LTR8 LTR ERV1 548 690 -1 6303 106 36 3 chr12 31806252 31807140 -111979315 + HUERS-P1 LTR ERV1 1 917 -5346 2343 116 9 3 chr12 31807144 31807479 -111978976 + HUERS-P1 LTR ERV1 1427 1763 -4500 869 263 55 119 chr12 31807589 31808118 -111978337 + MLT1G LTR MaLR 96 574 -16 207 220 0 0 chr12 31808168 31808218 -111978237 + (CA)n Simple_repeat Simple_repeat 1 50 0 1759 175 0 0 chr12 31808617 31808902 -111977553 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr12 31808902 31808932 -111977523 + AT_rich Low_complexity Low_complexity 1 30 0 371 278 31 0 chr12 31809458 31809555 -111976900 + MIR SINE MIR 57 156 -106 546 292 42 54 chr12 31809558 31809598 -111976857 - MIR SINE MIR -16 246 207 2150 104 24 3 chr12 31809598 31809895 -111976560 - AluY SINE Alu -8 303 1 546 292 42 54 chr12 31809895 31810094 -111976361 - MIR SINE MIR -55 207 10 205 194 45 45 chr12 31810102 31810169 -111976286 + MIR SINE MIR 159 225 -37 235 160 11 43 chr12 31811108 31811202 -111975253 + GA-rich Low_complexity Low_complexity 2 92 0 1831 163 89 13 chr12 31811544 31812004 -111974451 - Charlie1 DNA MER1_type 0 2761 2267 8238 130 10 8 chr12 31812121 31813435 -111973020 - THE1A-int LTR MaLR -263 1317 1 2401 110 32 3 chr12 31813435 31813780 -111972675 - THE1A LTR MaLR 0 355 1 6190 214 25 22 chr12 31813784 31815439 -111971016 - L1 LINE L1 -2286 3860 2202 190 284 63 21 chr12 31815873 31815968 -111970487 + MIR SINE MIR 110 208 -54 471 232 36 0 chr12 31816048 31816160 -111970295 - MIR SINE MIR -63 199 84 3424 80 0 0 chr12 31816316 31816768 -111969687 + L1PA5 LINE L1 5701 6152 -2 199 276 11 81 chr12 31817094 31817121 -111969334 - MIR3 SINE MIR -30 178 151 1680 135 4 12 chr12 31817121 31817380 -111969075 + AluSq SINE Alu 40 296 -17 199 276 11 81 chr12 31817380 31817439 -111969016 - MIR3 SINE MIR -57 151 98 506 278 183 6 chr12 31817517 31817697 -111968758 + MIR SINE MIR 23 234 -28 747 109 0 0 chr12 31818190 31818309 -111968146 + L1MA9 LINE L1 6189 6307 -5 1715 221 88 23 chr12 31820393 31820942 -111965513 - MER77 LTR ERV1 -8 597 38 1072 294 72 6 chr12 31821265 31821622 -111964833 - L1M4 LINE L1 -820 5326 4994 180 0 0 0 chr12 31821622 31821642 -111964813 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1072 294 72 6 chr12 31821642 31821923 -111964532 - L1M4 LINE L1 -1152 4994 4646 2684 226 37 19 chr12 31821931 31822655 -111963800 - L1MC3 LINE L1 -17 7768 7032 1877 226 31 2 chr12 31822694 31823150 -111963305 - L1MC3 LINE L1 -687 7098 6630 240 35 0 0 chr12 31823154 31823183 -111963272 + (TG)n Simple_repeat Simple_repeat 2 30 0 1078 249 96 38 chr12 31823189 31823555 -111962900 - MSTD LTR MaLR -9 387 1 400 287 9 43 chr12 31823683 31823798 -111962657 - MIR SINE MIR -61 147 37 316 190 66 33 chr12 31824595 31824716 -111961739 + L1MC5 LINE L1 7603 7727 -234 1449 173 0 60 chr12 31824732 31825016 -111961439 + AluSx SINE Alu 37 303 -9 368 275 10 62 chr12 31825017 31825210 -111961245 + L1MC5 LINE L1 7716 7898 -63 2205 109 0 10 chr12 31825534 31825837 -111960618 - AluSg SINE Alu -10 300 1 2750 104 10 2 chr12 31825838 31826252 -111960203 - MSTA-int LTR MaLR -1157 423 7 3630 196 11 16 chr12 31826383 31826457 -111959998 - L1 LINE L1 -1444 4702 4629 2220 125 3 0 chr12 31826457 31826768 -111959687 - AluSx SINE Alu 0 312 1 3630 196 11 16 chr12 31826768 31827540 -111958915 - L1 LINE L1 -1517 4629 3861 63 67 0 0 chr12 31827630 31827749 -111958706 + GC_rich Low_complexity Low_complexity 1 119 0 211 170 38 19 chr12 31827801 31827907 -111958548 + C-rich Low_complexity Low_complexity 1 108 0 180 0 0 0 chr12 31828158 31828178 -111958277 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2203 154 70 5 chr12 31829015 31829417 -111957038 - MSTA LTR MaLR 0 428 1 235 29 0 29 chr12 31829683 31829717 -111956738 - L1P2 LINE L1 -585 5570 5538 * 4338 54 2 1 chr12 31829715 31830640 -111955815 + L1P2 LINE L1 4826 5750 -404 5838 155 30 12 chr12 31830868 31831864 -111954591 + L1M1 LINE L1 1081 2094 -5471 1212 119 44 19 chr12 31831883 31832192 -111954263 - L1M1 LINE L1 -743 5403 5156 1473 221 65 15 chr12 31832305 31832708 -111953747 - MER50 LTR ERV1 -311 423 1 474 167 133 0 chr12 31832708 31832828 -111953627 + L1MCa LINE L1 1423 1558 -4868 2275 110 0 3 chr12 31832862 31833170 -111953285 + AluSc SINE Alu 1 307 -2 204 216 0 0 chr12 31833185 31833223 -111953232 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1340 190 123 46 chr12 31833252 31833603 -111952852 - MLT2B1 LTR ERVL -25 529 103 3257 246 31 12 chr12 31833610 31834739 -111951716 + L1MCa LINE L1 2388 3498 -2928 1023 171 42 73 chr12 31834809 31835385 -111951070 + MER4C LTR ERV1 1 430 -35 2102 138 0 0 chr12 31835570 31835866 -111950589 + AluSx SINE Alu 2 297 -15 597 259 18 29 chr12 31836206 31836376 -111950079 + MIR SINE MIR 21 188 -74 1244 73 28 0 chr12 31836439 31836617 -111949838 - L1PA8 LINE L1 -226 5928 5746 1692 81 0 0 chr12 31836617 31836830 -111949625 + L1PA8 LINE L1 5948 6170 -2 2066 130 30 3 chr12 31837820 31838119 -111948336 - AluSg SINE Alu -3 307 1 335 265 92 0 chr12 31839211 31839309 -111947146 - MIR SINE MIR -30 232 126 243 392 82 10 chr12 31840211 31840405 -111946050 + L2 LINE L2 2926 3133 -139 314 277 124 15 chr12 31840493 31840630 -111945825 - MIR SINE MIR -76 186 35 202 317 57 24 chr12 31840723 31840846 -111945609 + L2 LINE L2 3141 3267 -5 338 269 43 64 chr12 31841898 31842039 -111944416 - MIR3 SINE MIR -69 139 2 371 307 131 11 chr12 31842174 31842350 -111944105 - MIR SINE MIR -17 245 49 251 348 68 38 chr12 31842942 31843178 -111943277 - L2 LINE L2 -357 2957 2715 181 283 192 50 chr12 31843672 31843792 -111942663 - MIR SINE MIR -75 187 51 833 233 19 27 chr12 31844126 31844388 -111942067 - MIR SINE MIR 0 262 3 201 319 9 53 chr12 31844606 31844719 -111941736 - L2 LINE L2 -4 3309 3202 685 278 52 4 chr12 31844762 31845010 -111941445 - MIR SINE MIR 0 262 3 1082 216 42 86 chr12 31845326 31845757 -111940698 + L1ME1 LINE L1 5723 6134 -32 548 198 8 8 chr12 31845762 31845888 -111940567 + L1MC4a LINE L1 7569 7694 -114 475 218 113 85 chr12 31846335 31846583 -111939872 + L1MEc LINE L1 146 400 -5996 22 0 0 0 chr12 31846683 31846705 -111939750 + AT_rich Low_complexity Low_complexity 1 22 0 2042 158 27 32 chr12 31847385 31847938 -111938517 - MLT2A2 LTR ERVL 0 554 8 232 319 186 9 chr12 31848893 31849006 -111937449 + MER91A DNA MER1_type 42 174 -22 3478 234 63 35 chr12 31850269 31852406 -111934049 - L1ME2 LINE L1 -119 6045 3843 268 325 84 44 chr12 31852566 31852815 -111933640 + L2 LINE L2 1855 2113 -1201 479 201 58 7 chr12 31852946 31853100 -111933355 + L1M4 LINE L1 4322 4483 -1663 271 331 37 25 chr12 31854515 31854678 -111931777 + L2 LINE L2 2656 2820 -494 193 265 0 128 chr12 31854684 31854786 -111931669 + L2 LINE L2 3133 3221 -51 203 161 0 0 chr12 31854796 31854827 -111931628 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 192 152 0 0 chr12 31855822 31855855 -111930600 + CT-rich Low_complexity Low_complexity 2 34 0 195 100 0 0 chr12 31855868 31855898 -111930557 + (TTG)n Simple_repeat Simple_repeat 1 30 0 957 102 24 0 chr12 31856580 31856707 -111929748 + AluY SINE Alu 3 132 -179 234 321 100 14 chr12 31857269 31857298 -111929157 - L2 LINE L2 0 3272 3247 2305 75 0 0 chr12 31857298 31857602 -111928853 + AluY SINE Alu 3 306 0 234 321 100 14 chr12 31857602 31857711 -111928744 - L2 LINE L2 -25 3247 3121 189 256 0 0 chr12 31857988 31858027 -111928428 - MIR3 SINE MIR -28 180 142 478 254 33 103 chr12 31858789 31859002 -111927453 + MIR SINE MIR 31 228 -34 23 0 0 0 chr12 31860108 31860131 -111926324 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr12 31860619 31860644 -111925811 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 372 277 56 38 chr12 31861006 31861219 -111925236 + Charlie2 DNA MER1_type 107 323 -2459 448 194 164 67 chr12 31861268 31861536 -111924919 + Charlie2 DNA MER1_type 1903 2196 -666 923 243 74 8 chr12 31861589 31861832 -111924623 - MIR SINE MIR -3 259 1 464 226 87 20 chr12 31861872 31862124 -111924331 + Charlie2 DNA MER1_type 2356 2624 -238 856 178 6 6 chr12 31862225 31862382 -111924073 - FRAM SINE Alu -9 157 1 8798 232 43 37 chr12 31862403 31865030 -111921425 - L1ME1 LINE L1 -5 6230 3598 2200 142 52 32 chr12 31865030 31865473 -111920982 - L1MA8 LINE L1 -5 6286 5835 8798 232 43 37 chr12 31865473 31867035 -111919420 - L1ME1 LINE L1 -2637 3598 2047 204 247 91 26 chr12 31868638 31868715 -111917740 - MIR3 SINE MIR -25 183 102 182 345 18 0 chr12 31868808 31868863 -111917592 + MER5A DNA MER1_type 54 109 -80 495 287 208 10 chr12 31868950 31869152 -111917303 + MIR SINE MIR 21 262 0 2157 72 45 0 chr12 31869189 31869479 -111916976 - AluY SINE Alu -8 303 1 2424 183 38 35 chr12 31870160 31870478 -111915977 - MER90 LTR ERV1 0 614 292 2446 82 0 7 chr12 31870478 31870781 -111915674 + AluSp SINE Alu 1 301 -12 2424 183 38 35 chr12 31870781 31871042 -111915413 - MER90 LTR ERV1 -322 292 33 422 326 38 5 chr12 31871244 31871428 -111915027 + LTR33 LTR ERVL 3 192 -329 8125 104 129 30 chr12 31871560 31873105 -111913350 - pTR5 LTR ERV1 0 2438 741 396 154 29 0 chr12 31874338 31874442 -111912013 + (TA)n Simple_repeat Simple_repeat 2 108 0 2318 107 10 0 chr12 31874442 31874751 -111911704 - AluSq SINE Alu 0 313 2 2454 130 18 81 chr12 31874820 31875313 -111911142 - L1PA16 LINE L1 -2 6164 5703 2197 131 3 0 chr12 31875496 31875793 -111910662 - AluSx SINE Alu -14 298 1 195 42 0 0 chr12 31875916 31875940 -111910515 + (CAA)n Simple_repeat Simple_repeat 3 26 0 5633 35 0 0 chr12 31876777 31877439 -111909016 - L1PA5 LINE L1 0 6154 5493 337 230 16 8 chr12 31877732 31877825 -111908630 + MIR SINE MIR 100 192 -70 267 295 170 17 chr12 31878212 31878375 -111908080 + MIR SINE MIR 16 196 -66 474 273 63 0 chr12 31878471 31878614 -111907841 - MIR SINE MIR -74 188 37 572 276 140 19 chr12 31880566 31880780 -111905675 + MIR SINE MIR 15 254 -8 1299 181 47 34 chr12 31880788 31881109 -111905346 + MLT2C1 LTR ERVL 5 329 -68 1662 161 46 7 chr12 31881122 31881402 -111905053 + AluJb SINE Alu 1 291 -21 1038 138 69 0 chr12 31881413 31881602 -111904853 + MER82 DNA MER2_type 2 203 -450 3852 101 14 3 chr12 31881781 31882366 -111904089 - L1MA1 LINE L1 0 6302 5712 234 0 0 0 chr12 31882576 31882602 -111903853 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1921 201 30 15 chr12 31882749 31883151 -111903304 + MER82 DNA MER2_type 201 608 -45 1311 154 12 20 chr12 31883152 31883405 -111903050 + LTR1 LTR ERV1 1 251 -534 254 224 0 0 chr12 31883396 31883454 -111903001 + LTR1 LTR ERV1 201 258 -527 * 3179 129 10 48 chr12 31883444 31884048 -111902407 + LTR1 LTR ERV1 205 785 0 1376 307 118 6 chr12 31885278 31886348 -111900107 - L2 LINE L2 -6 3307 2098 869 228 70 21 chr12 31886352 31886780 -111899675 + MLT1F LTR MaLR 2 533 -9 1219 313 65 8 chr12 31886850 31887371 -111899084 - L2 LINE L2 -1945 1369 819 460 247 220 63 chr12 31887417 31887481 -111898974 - MIR SINE MIR -3 259 206 2144 144 0 0 chr12 31887481 31887787 -111898668 + AluSx SINE Alu 1 306 -6 460 247 220 63 chr12 31887787 31887945 -111898510 - MIR SINE MIR -56 206 2 33 0 0 0 chr12 31888986 31889019 -111897436 + AT_rich Low_complexity Low_complexity 1 33 0 345 331 30 24 chr12 31889796 31889965 -111896490 + MIR SINE MIR 28 197 -65 399 241 121 109 chr12 31890167 31890369 -111896086 - MIR SINE MIR 0 262 55 2412 94 0 0 chr12 31890369 31890667 -111895788 - AluSc SINE Alu -11 298 1 399 241 121 109 chr12 31890667 31890721 -111895734 - MIR SINE MIR -207 55 3 5424 152 10 12 chr12 31893423 31894979 -111891476 + L1PA15 LINE L1 4594 6144 -21 1088 87 13 0 chr12 31896156 31896305 -111890150 - AluSc SINE Alu -6 303 153 1190 51 38 25 chr12 31896702 31896859 -111889596 - AluSc SINE Alu -150 159 1 671 280 16 10 chr12 31896866 31897059 -111889396 - MIR SINE MIR -56 206 13 195 42 0 0 chr12 31897088 31897112 -111889343 + (A)n Simple_repeat Simple_repeat 1 24 0 2236 141 55 55 chr12 31897120 31897380 -111889075 + Tigger2a DNA MER2_type 1 263 -2445 1850 100 36 0 chr12 31897380 31897631 -111888824 + AluY SINE Alu 35 294 -17 2236 141 55 55 chr12 31897631 31897804 -111888651 + Tigger2a DNA MER2_type 262 434 0 43 0 0 0 chr12 31899395 31899438 -111887017 + AT_rich Low_complexity Low_complexity 1 43 0 1602 167 28 28 chr12 31899556 31899843 -111886612 - AluJo SINE Alu -24 288 2 825 264 147 85 chr12 31899859 31900851 -111885604 + L1MCc LINE L1 144 1197 -5226 2535 255 90 29 chr12 31900904 31902043 -111884412 + L1MCc LINE L1 1610 2842 -4099 2501 156 39 0 chr12 31902043 31902453 -111884002 + MSTB LTR MaLR 1 426 0 2535 255 90 29 chr12 31902453 31902940 -111883515 + L1MCc LINE L1 2842 3298 -3643 26 0 0 0 chr12 31903576 31903602 -111882853 + AT_rich Low_complexity Low_complexity 1 26 0 2142 121 116 10 chr12 31903716 31904103 -111882352 - MSTA LTR MaLR 0 428 1 327 247 11 34 chr12 31904542 31904631 -111881824 + L2 LINE L2 3227 3313 0 1371 194 20 78 chr12 31905289 31905686 -111880769 + MLT1A2 LTR MaLR 1 374 0 502 343 73 5 chr12 31905759 31905963 -111880492 - MIR SINE MIR -40 222 5 341 343 36 0 chr12 31906351 31906517 -111879938 + MIR SINE MIR 67 238 -24 365 354 82 5 chr12 31906576 31906771 -111879684 + L2 LINE L2 3101 3310 -3 670 98 20 0 chr12 31907159 31907261 -111879194 - L1MC1 LINE L1 -3 6330 6227 254 268 65 72 chr12 31907992 31908145 -111878310 - MARNA DNA Mariner -330 256 105 239 258 93 119 chr12 31908871 31908958 -111877497 + LTR16A LTR ERVL 16 104 -346 930 191 0 0 chr12 31908958 31909115 -111877340 + FRAM SINE Alu 1 157 -9 239 258 93 119 chr12 31909115 31909221 -111877234 + LTR16A LTR ERVL 104 204 -246 1673 271 54 59 chr12 31909312 31910038 -111876417 + ERVL LTR ERVL 3 724 -4272 1761 276 61 24 chr12 31910048 31911284 -111875171 + ERVL LTR ERVL 832 2224 -2772 2225 327 73 33 chr12 31911307 31911629 -111874826 + ERVL LTR ERVL 3742 4050 -946 2475 68 0 0 chr12 31911629 31911925 -111874530 + AluY SINE Alu 1 296 -15 2225 327 73 33 chr12 31911925 31912433 -111874022 + ERVL LTR ERVL 4050 4165 -831 1812 133 13 40 chr12 31912433 31912735 -111873720 - AluSg1 SINE Alu -15 294 1 2225 327 73 33 chr12 31912735 31913509 -111872946 + ERVL LTR ERVL 4165 4906 -90 2065 130 0 10 chr12 31913577 31913884 -111872571 + AluSg SINE Alu 1 304 -6 1299 236 65 40 chr12 31913911 31914310 -111872145 + LTR16A LTR ERVL 22 430 -20 1658 239 59 20 chr12 31916159 31916627 -111869828 - MLT1H LTR MaLR 0 549 19 21 36 0 0 chr12 31916688 31916716 -111869739 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr12 31916883 31916946 -111869509 + AT_rich Low_complexity Low_complexity 1 63 0 549 216 62 56 chr12 31917269 31917431 -111869024 + MLT1G LTR MaLR 428 590 0 4377 131 174 20 chr12 31918775 31919773 -111866682 + pTR5 LTR ERV1 738 2024 -414 334 250 0 10 chr12 31919774 31919874 -111866581 + LTR30 LTR ERV1 544 642 -80 2878 13 0 0 chr12 31919891 31920202 -111866253 - AluYa5 SINE Alu 0 311 1 1534 104 5 5 chr12 31920206 31920427 -111866028 + pTR5 LTR ERV1 172 392 -2046 294 188 135 62 chr12 31920854 31920950 -111865505 + L2 LINE L2 3170 3272 0 2317 216 132 51 chr12 31921747 31922288 -111864167 - Charlie2a DNA MER1_type -1 2861 2365 1673 180 80 37 chr12 31922288 31922638 -111863817 - MLT1A1 LTR MaLR 0 365 1 2317 216 132 51 chr12 31922638 31922777 -111863678 - Charlie2a DNA MER1_type -497 2365 2239 3893 132 0 4 chr12 31922777 31923306 -111863149 + MER1A DNA MER1_type 1 527 0 2317 216 132 51 chr12 31923306 31923640 -111862815 - Charlie2a DNA MER1_type -623 2239 1764 325 138 0 35 chr12 31923681 31923739 -111862716 - LTR40a LTR ERVL -373 146 91 815 189 11 28 chr12 31923805 31923985 -111862470 - Charlie2a DNA MER1_type -1204 1658 1482 890 259 128 54 chr12 31924013 31924441 -111862014 - Charlie2a DNA MER1_type -2310 472 13 1894 89 67 0 chr12 31925199 31925468 -111860987 - L1MA2 LINE L1 0 6304 6018 609 111 32 56 chr12 31925473 31925599 -111860856 - L1MA2 LINE L1 -204 6100 5978 648 238 41 54 chr12 31927399 31927693 -111858762 + L1ME4a LINE L1 5580 5869 -252 295 212 122 108 chr12 31927810 31928088 -111858367 + L1ME4a LINE L1 5837 6118 -3 564 307 135 41 chr12 31928703 31929139 -111857316 + L3 LINE CR1 117 593 -984 246 62 0 0 chr12 31929266 31929298 -111857157 + (CA)n Simple_repeat Simple_repeat 2 33 0 661 328 71 35 chr12 31929300 31929763 -111856692 + L2 LINE L2 2450 2929 -385 1098 264 113 43 chr12 31929951 31930421 -111856034 - L2 LINE L2 -2 3311 2809 222 292 15 0 chr12 31930873 31930938 -111855517 + L2 LINE L2 3248 3313 0 253 319 11 11 chr12 31931273 31931367 -111855088 + GA-rich Low_complexity Low_complexity 3 96 0 226 189 0 0 chr12 31931745 31931782 -111854673 + MER53 DNA DNA 5 41 -148 1246 274 55 21 chr12 31933280 31933699 -111852756 + LTR16A LTR ERVL 16 448 -2 2378 284 43 15 chr12 31933701 31934448 -111852007 + HERV16 LTR ERVL 1 768 -4228 1562 329 43 11 chr12 31934460 31935153 -111851302 + HERV16 LTR ERVL 2826 3540 -2224 1899 202 18 5 chr12 31935154 31935545 -111850910 - MER63C DNA MER1_type -16 914 519 708 215 133 0 chr12 31935620 31935755 -111850700 - AluJb SINE Alu -17 295 143 8222 68 9 9 chr12 31935755 31936812 -111849643 + MER11C LTR ERVK 1 1057 -14 1946 193 23 23 chr12 31936908 31937343 -111849112 - MER63C DNA MER1_type -446 484 50 371 333 60 31 chr12 31937565 31937982 -111848473 + HERV16 LTR ERVL 3910 4290 -706 466 312 46 21 chr12 31938284 31938655 -111847800 + HERV16 LTR ERVL 4537 5310 -175 611 320 63 40 chr12 31938808 31939255 -111847200 + LTR16B LTR ERVL 8 464 0 797 269 137 55 chr12 31939255 31939692 -111846763 + L1ME2 LINE L1 4843 5326 -820 1613 222 122 16 chr12 31939692 31940143 -111846312 - MLT1D LTR MaLR -2 503 5 797 269 137 55 chr12 31940143 31940195 -111846260 + L1ME2 LINE L1 5326 5372 -774 283 342 116 13 chr12 31941438 31941593 -111844862 + MIR3 SINE MIR 17 187 -21 272 327 101 42 chr12 31943573 31943790 -111842665 + L2 LINE L2 2851 3080 -192 1288 215 21 58 chr12 31944372 31944641 -111841814 + L1ME2 LINE L1 5793 6046 -118 2750 202 80 79 chr12 31944641 31945466 -111840989 + LTR1B LTR ERV1 1 826 0 1288 215 21 58 chr12 31945466 31945572 -111840883 + L1ME2 LINE L1 6046 6154 -10 375 60 0 0 chr12 31945719 31945769 -111840686 + (TG)n Simple_repeat Simple_repeat 1 50 0 1348 213 54 57 chr12 31946127 31946516 -111839939 - MLT1B LTR MaLR -1 389 2 200 286 176 11 chr12 31946552 31946643 -111839812 - L2 LINE L2 -1 3312 3207 541 234 55 45 chr12 31947555 31947756 -111838699 - MIR SINE MIR -47 215 13 2165 122 0 0 chr12 31948136 31948431 -111838024 - AluSx SINE Alu -17 295 1 570 272 69 0 chr12 31949133 31949306 -111837149 - MIR SINE MIR -73 189 5 915 161 0 0 chr12 31949337 31949517 -111836938 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 189 40 0 chr12 31949542 31949616 -111836839 + (CTATA)n Simple_repeat Simple_repeat 2 78 0 4045 109 13 30 chr12 31952225 31952688 -111833767 - L1PA16 LINE L1 -104 6062 5610 1840 137 3 82 chr12 31952688 31953016 -111833439 - AluSx SINE Alu -10 302 1 4045 109 13 30 chr12 31953016 31953156 -111833299 - L1PA16 LINE L1 -556 5610 5469 2194 118 0 0 chr12 31954570 31954867 -111831588 - AluSx SINE Alu -15 297 1 25 31 0 0 chr12 31955658 31955690 -111830765 + AT_rich Low_complexity Low_complexity 1 32 0 354 173 12 25 chr12 31955996 31956077 -111830378 - MER116 DNA Mariner 0 80 1 828 215 123 53 chr12 31957381 31957713 -111828742 - LTR37A LTR ERV1 -123 303 14 21 0 0 0 chr12 31957886 31957907 -111828548 + AT_rich Low_complexity Low_complexity 1 21 0 321 353 17 9 chr12 31957978 31958094 -111828361 - MER89-int LTR ERV1 -4374 273 157 491 296 96 21 chr12 31958303 31958583 -111827872 - MER89-int LTR ERV1 -4428 2373 2073 758 241 97 97 chr12 31958900 31959365 -111827090 - L1M4 LINE L1 -929 5217 4753 325 194 15 0 chr12 31959506 31959573 -111826882 + LTR60 LTR ERV1 1 68 -518 1161 231 62 19 chr12 31959690 31960011 -111826444 + LTR43 LTR ERV1 131 465 -137 500 268 134 8 chr12 31960494 31960860 -111825595 + L1ME4a LINE L1 5710 6121 0 375 23 0 0 chr12 31961968 31962012 -111824443 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr12 31962779 31962805 -111823650 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 31963668 31963689 -111822766 + GC_rich Low_complexity Low_complexity 1 21 0 1045 238 39 83 chr12 31964322 31964789 -111821666 - LTR40a LTR ERVL -13 506 61 541 277 123 45 chr12 31965414 31965554 -111820901 + L2 LINE L2 2815 2943 -370 2441 77 0 0 chr12 31965554 31965852 -111820603 - AluSg SINE Alu -12 298 1 541 277 123 45 chr12 31965852 31966043 -111820412 + L2 LINE L2 2943 3172 -141 2478 231 83 46 chr12 31966415 31967237 -111819218 - MER21B LTR ERV1 -11 852 1 3259 186 20 50 chr12 31967447 31968244 -111818211 - MER21B-int LTR ERV1 -58 4133 3361 2996 201 11 16 chr12 31968244 31968912 -111817543 - MER21B-int LTR ERV1 -772 3419 2756 199 303 61 53 chr12 31969526 31969658 -111816797 - MER5B DNA MER1_type -43 135 3 750 227 127 23 chr12 31969667 31969887 -111816568 - MIR SINE MIR -2 260 18 2494 70 0 0 chr12 31970345 31970646 -111815809 - AluY SINE Alu -10 301 1 445 267 167 56 chr12 31970816 31971086 -111815369 - L2 LINE L2 -86 3227 2928 304 237 219 26 chr12 31971125 31971239 -111815216 - L2 LINE L2 -250 3063 2928 310 239 229 28 chr12 31971279 31971388 -111815067 - L2 LINE L2 -251 3062 2932 1547 143 181 27 chr12 31971389 31971754 -111814701 + MSTA LTR MaLR 1 421 -7 404 327 110 8 chr12 31971761 31972024 -111814431 - L2 LINE L2 -374 2940 2651 2414 80 0 0 chr12 31972029 31972318 -111814137 + AluSq SINE Alu 11 299 -14 1381 155 134 63 chr12 31972318 31972720 -111813735 + LTR54B LTR ERV1 14 453 -45 1554 160 0 69 chr12 31972720 31973038 -111813417 + AluJb SINE Alu 1 296 -16 1381 155 134 63 chr12 31973038 31973081 -111813374 + LTR54B LTR ERV1 453 491 -7 2549 53 0 3 chr12 31973335 31973639 -111812816 - AluY SINE Alu 0 311 9 961 202 83 138 chr12 31974490 31975005 -111811450 + LTR45B LTR ERV1 2 488 -1 236 312 156 0 chr12 31975747 31975824 -111810631 - L2 LINE L2 0 3272 3184 274 125 0 78 chr12 31975942 31976006 -111810449 - L1PB4 LINE L1 -1 6155 6097 368 262 9 0 chr12 31976234 31976341 -111810114 - LTR43 LTR ERV1 -306 296 189 1360 148 49 0 chr12 31976545 31976789 -111809666 - L1PB4 LINE L1 -50 6106 5851 520 306 121 19 chr12 31976975 31977347 -111809108 - Charlie8 DNA MER1_type -1896 521 112 198 71 0 0 chr12 31977504 31977532 -111808923 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 203 272 141 0 chr12 31977544 31977636 -111808819 - L2 LINE L2 -16 3297 3193 3830 115 0 6 chr12 31977927 31978457 -111807998 - MER1A DNA MER1_type 0 527 1 1096 182 63 20 chr12 31978939 31979241 -111807214 + MER33 DNA MER1_type 10 324 0 27 29 0 0 chr12 31980042 31980076 -111806379 + AT_rich Low_complexity Low_complexity 1 34 0 3406 141 87 13 chr12 31980513 31981538 -111804917 + Tigger3b DNA MER2_type 40 1232 0 22 0 0 0 chr12 31981711 31981733 -111804722 + AT_rich Low_complexity Low_complexity 1 22 0 315 169 0 0 chr12 31981995 31982066 -111804389 + (TA)n Simple_repeat Simple_repeat 2 72 0 732 251 92 53 chr12 31982271 31982686 -111803769 + Charlie2 DNA MER1_type 44 474 -2308 1630 213 73 55 chr12 31982715 31983613 -111802842 + Charlie2a DNA MER1_type 1482 2362 -500 2328 99 0 0 chr12 31983613 31983907 -111802548 + AluY SINE Alu 3 296 -15 1630 213 73 55 chr12 31983907 31984050 -111802405 + Charlie2a DNA MER1_type 2362 2501 -361 8037 77 5 9 chr12 31984050 31985126 -111801329 + MER11C LTR ERVK 1 1071 0 1630 213 73 55 chr12 31985126 31985393 -111801062 + Charlie2a DNA MER1_type 2501 2845 -17 25 0 0 0 chr12 31986000 31986025 -111800430 + AT_rich Low_complexity Low_complexity 1 25 0 2117 138 33 30 chr12 31986035 31986398 -111800057 + THE1B LTR MaLR 1 364 0 199 211 211 32 chr12 31986554 31986677 -111799778 - L2 LINE L2 -11 3302 3158 24 67 0 0 chr12 31987760 31987805 -111798650 + AT_rich Low_complexity Low_complexity 1 45 0 183 258 106 0 chr12 31988382 31988448 -111798007 - MIR SINE MIR -109 153 81 5225 117 16 41 chr12 31988616 31989621 -111796834 + L1PB3 LINE L1 5176 6154 0 38 22 0 0 chr12 31990157 31990202 -111796253 + AT_rich Low_complexity Low_complexity 1 45 0 2074 139 2 42 chr12 31990203 31990472 -111795983 - L1MA7 LINE L1 -2 6289 6040 1961 158 45 20 chr12 31990472 31990827 -111795628 + THE1B LTR MaLR 1 364 0 2074 139 2 42 chr12 31990827 31990961 -111795494 - L1MA7 LINE L1 -251 6040 5902 1295 156 40 8 chr12 31990973 31991223 -111795232 + L1M2 LINE L1 5373 5630 -661 417 374 58 0 chr12 31992576 31992715 -111793740 - L2 LINE L2 0 3272 3126 3539 133 9 52 chr12 31992803 31993433 -111793022 - LTR26 LTR ERV1 0 603 1 660 291 35 6 chr12 31993479 31993651 -111792804 - MIR SINE MIR -77 185 9 2182 168 48 30 chr12 31993755 31994071 -111792384 + LTR24 LTR ERV1 1 329 -138 2213 141 0 0 chr12 31994071 31994383 -111792072 + AluSx SINE Alu 1 312 0 2182 168 48 30 chr12 31994383 31994525 -111791930 + LTR24 LTR ERV1 329 467 0 967 258 51 110 chr12 31994585 31995175 -111791280 + MLT1G LTR MaLR 20 574 -16 207 220 0 0 chr12 31995225 31995275 -111791180 + (CA)n Simple_repeat Simple_repeat 1 50 0 2148 117 7 26 chr12 31995674 31995983 -111790472 + AluSx SINE Alu 1 303 -9 483 305 135 13 chr12 31996140 31996599 -111789856 - L1ME2 LINE L1 -212 5952 5438 646 252 40 97 chr12 31996604 31997028 -111789427 + HAL1 LINE L1 2070 2469 -38 342 0 0 0 chr12 31997237 31997275 -111789180 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 277 31 0 chr12 31997357 31997422 -111789033 + CT-rich Low_complexity Low_complexity 4 70 0 550 287 146 53 chr12 31997883 31998641 -111787814 - L2 LINE L2 0 3272 2360 309 307 18 9 chr12 31998810 31998924 -111787531 + L2 LINE L2 3153 3267 -5 220 303 90 0 chr12 31999187 31999276 -111787179 - MIR SINE MIR -7 255 159 427 172 56 141 chr12 31999276 31999474 -111786981 - MER53 DNA DNA -8 181 1 285 319 51 22 chr12 31999476 31999614 -111786841 - MIR SINE MIR -93 169 28 208 190 10 130 chr12 32000172 32000272 -111786183 + MIR SINE MIR 118 205 -57 465 241 46 9 chr12 32000973 32001081 -111785374 - L2 LINE L2 -3 3310 3199 712 270 67 30 chr12 32001733 32002233 -111784222 - MLT1G LTR MaLR -2 588 1 4754 198 106 16 chr12 32003662 32004240 -111782215 + Charlie1a DNA MER1_type 1 526 -2235 1812 199 63 72 chr12 32004240 32004799 -111781656 + MLT2B3 LTR ERVL 1 554 0 4754 198 106 16 chr12 32004799 32005556 -111780899 + Charlie1a DNA MER1_type 526 1455 0 235 160 11 43 chr12 32005898 32005992 -111780463 + CT-rich Low_complexity Low_complexity 2 92 0 222 37 0 0 chr12 32006689 32006716 -111779739 + (CA)n Simple_repeat Simple_repeat 1 27 0 233 203 51 38 chr12 32006872 32006951 -111779504 - MIR SINE MIR -24 238 159 545 292 42 54 chr12 32006959 32007158 -111779297 + MIR SINE MIR 10 207 -55 2148 101 24 3 chr12 32007158 32007455 -111779000 + AluY SINE Alu 1 303 -8 545 292 42 54 chr12 32007455 32007495 -111778960 + MIR SINE MIR 207 246 -16 368 278 31 0 chr12 32007498 32007595 -111778860 - MIR SINE MIR -106 156 57 23 33 0 0 chr12 32008120 32008150 -111778305 + AT_rich Low_complexity Low_complexity 1 30 0 1733 183 0 0 chr12 32008150 32008435 -111778020 - AluJo SINE Alu -27 285 1 414 298 50 35 chr12 32009295 32009436 -111777019 + MIR3 SINE MIR 5 147 -61 1176 235 96 38 chr12 32009563 32009929 -111776526 + MSTD LTR MaLR 1 387 -9 294 29 0 0 chr12 32009935 32009970 -111776485 + (CA)n Simple_repeat Simple_repeat 2 36 0 4038 194 31 97 chr12 32009974 32011209 -111775246 + L1MC3 LINE L1 6630 7782 -3 2534 230 91 9 chr12 32011201 32011489 -111774966 + L1ME2 LINE L1 4639 4902 -1262 * 180 0 0 0 chr12 32011489 32011509 -111774946 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2534 230 91 9 chr12 32011509 32012623 -111773832 + L1ME2 LINE L1 4902 6162 -2 368 300 9 0 chr12 32012668 32012778 -111773677 - MIR SINE MIR 0 262 152 239 108 0 0 chr12 32013676 32013713 -111772742 + Alu SINE Alu 260 296 -4 216 0 0 0 chr12 32014096 32014120 -111772335 + (A)n Simple_repeat Simple_repeat 1 24 0 2078 143 0 7 chr12 32014529 32014836 -111771619 + AluJb SINE Alu 1 305 -7 2295 212 81 14 chr12 32015304 32015849 -111770606 + MER77 LTR ERV1 41 597 -8 1669 167 48 3 chr12 32017001 32017294 -111769161 + AluSx SINE Alu 1 306 -6 838 194 14 126 chr12 32017849 32018143 -111768312 - LTR41 LTR ERVL -7 766 506 767 208 67 12 chr12 32018288 32018489 -111767966 - LTR41 LTR ERVL -556 239 1 5706 150 20 20 chr12 32019296 32022468 -111763987 + L1MA2 LINE L1 16 3186 -4537 836 172 23 0 chr12 32022468 32022596 -111763859 + FLAM_C SINE Alu 3 133 0 5706 150 20 20 chr12 32022596 32022894 -111763561 + L1MA2 LINE L1 3186 3482 -4241 297 0 0 0 chr12 32022894 32022927 -111763528 + (CA)n Simple_repeat Simple_repeat 2 34 0 5706 150 20 20 chr12 32022927 32024708 -111761747 + L1MA2 LINE L1 3482 5261 -2462 2663 102 32 0 chr12 32024708 32025052 -111761403 + THE1A LTR MaLR 1 355 0 11415 102 53 1 chr12 32025052 32026555 -111759900 + THE1A-int LTR MaLR 1 1580 0 2484 100 41 0 chr12 32026555 32026896 -111759559 + THE1A LTR MaLR 1 355 0 5706 150 20 20 chr12 32026896 32027695 -111758760 + L1MA2 LINE L1 5261 6058 -1665 2186 129 3 0 chr12 32027695 32028006 -111758449 + AluSx SINE Alu 1 312 0 5706 150 20 20 chr12 32028006 32028847 -111757608 + L1MA2 LINE L1 6058 6897 -826 425 162 0 27 chr12 32028847 32028921 -111757534 + L1PA8A LINE L1 6055 6126 -5 * 5706 118 16 5 chr12 32028918 32029752 -111756703 + L1MA2 LINE L1 6881 7723 0 5706 150 20 20 chr12 32028921 32029761 -111756694 + L1MA2 LINE L1 6897 7723 0 718 133 0 31 chr12 32030008 32030136 -111756319 - L1MA9 LINE L1 0 6312 6189 2257 102 0 10 chr12 32030485 32030799 -111755656 - AluSq SINE Alu -2 311 1 488 296 151 0 chr12 32030970 32031156 -111755299 - MIR SINE MIR -28 234 21 238 286 60 12 chr12 32031233 32031317 -111755138 + MIR3 SINE MIR 98 185 -23 2340 162 16 0 chr12 32033798 32034163 -111752292 - THE1C LTR MaLR -4 371 1 9631 116 38 67 chr12 32034171 32035788 -111750667 - THE1C-int LTR MaLR -8 1572 2 2303 156 36 0 chr12 32035789 32036149 -111750306 - THE1C LTR MaLR 0 375 3 402 280 126 43 chr12 32036395 32036575 -111749880 - L1ME3A LINE L1 -223 6016 5852 4640 140 79 59 chr12 32036575 32037460 -111748995 - MER4D LTR ERV1 0 903 1 402 280 126 43 chr12 32037460 32037834 -111748621 - L1ME3A LINE L1 -387 5852 5407 1065 261 129 21 chr12 32037850 32038283 -111748172 - L1ME2 LINE L1 -6 6158 5679 1397 268 80 9 chr12 32038288 32038750 -111747705 - L1ME3A LINE L1 -5455 941 447 884 235 201 7 chr12 32038774 32039063 -111747392 - L1ME3A LINE L1 -5992 404 60 321 237 66 66 chr12 32039099 32039251 -111747204 - Charlie2 DNA MER1_type -2466 316 165 2270 85 7 7 chr12 32039411 32039706 -111746749 - AluSc SINE Alu -14 295 1 2730 96 6 3 chr12 32041140 32041494 -111744961 + THE1A LTR MaLR 1 355 0 12147 103 5 11 chr12 32041494 32041914 -111744541 + THE1A-int LTR MaLR 1 422 -1158 2100 114 0 10 chr12 32041914 32042213 -111744242 + AluSg SINE Alu 1 296 -14 12147 103 5 11 chr12 32042213 32043379 -111743076 + THE1A-int LTR MaLR 422 1578 -2 2383 117 38 0 chr12 32043381 32043723 -111742732 + THE1A LTR MaLR 1 355 0 747 176 120 0 chr12 32045280 32045422 -111741033 + MER58B DNA MER1_type 181 339 -2 2684 217 60 107 chr12 32046617 32046807 -111739648 - L1MC5 LINE L1 -74 7887 7690 1584 147 41 44 chr12 32046807 32047100 -111739355 - AluJo SINE Alu -18 294 3 2684 217 60 107 chr12 32047100 32048174 -111738281 - L1MC5 LINE L1 -271 7690 6682 5617 196 61 18 chr12 32048194 32050360 -111736095 - L1MB7 LINE L1 -1 6183 3938 214 333 0 0 chr12 32050401 32050449 -111736006 - MIR SINE MIR -209 53 6 * 221 287 188 74 chr12 32050410 32050926 -111735529 + L2 LINE L2 2012 2586 -728 244 263 38 0 chr12 32051107 32051187 -111735268 - L1ME LINE L1 -275 5846 5764 707 232 147 0 chr12 32051721 32051919 -111734536 - LTR16A1 LTR ERVL -28 429 203 28616 53 5 5 chr12 32052044 32056406 -111730049 + L1PA5 LINE L1 1543 6432 -2 198 91 0 0 chr12 32056439 32056472 -111729983 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 237 171 146 85 chr12 32056582 32056664 -111729791 - L2 LINE L2 -4 3268 3182 569 286 0 20 chr12 32059514 32059661 -111726794 + MIR SINE MIR 8 151 -111 259 340 62 0 chr12 32060115 32060212 -111726243 + MIR3 SINE MIR 78 180 -28 199 306 41 51 chr12 32062082 32062180 -111724275 - MIR SINE MIR -106 156 60 417 191 32 63 chr12 32062180 32062306 -111724149 + L1ME4a LINE L1 5964 6085 -36 1536 197 14 37 chr12 32062419 32062714 -111723741 + AluJo SINE Alu 11 298 -14 2065 68 39 84 chr12 32062961 32063271 -111723184 - AluSg SINE Alu -14 296 1 278 284 29 64 chr12 32063454 32063658 -111722797 - L2 LINE L2 -179 3093 2897 2530 145 23 0 chr12 32064177 32064570 -111721885 + MER57A LTR ERV1 2 403 0 2667 196 24 2 chr12 32065270 32065920 -111720535 + L1P5 LINE L1 4799 5460 -696 274 27 27 0 chr12 32065924 32065961 -111720494 + L1PB4 LINE L1 5928 5965 -191 892 317 51 59 chr12 32066456 32067099 -111719356 - L2 LINE L2 -346 2968 2331 611 121 0 11 chr12 32068544 32068635 -111717820 - 5S rRNA rRNA -31 90 1 191 337 139 0 chr12 32068791 32068877 -111717578 + MIR SINE MIR 50 147 -61 2077 114 20 13 chr12 32068924 32069223 -111717232 + AluSp SINE Alu 1 301 -12 4247 124 16 31 chr12 32069719 32070404 -111716051 - MER4D LTR ERV1 -197 675 1 366 179 0 77 chr12 32070404 32070482 -111715973 + AluJo SINE Alu 81 152 -150 279 293 24 0 chr12 32070547 32070629 -111715826 + LTR35 LTR ERV1 46 129 -489 712 235 66 44 chr12 32070747 32071075 -111715380 + LTR35 LTR ERV1 350 614 -4 806 227 0 23 chr12 32071078 32071250 -111715205 + FRAM SINE Alu 1 40 0 225 193 126 42 chr12 32071391 32071510 -111714945 + L1ME4a LINE L1 5988 6116 -5 1380 167 13 0 chr12 32071801 32072034 -111714421 - AluJo SINE Alu -4 308 73 18954 194 26 20 chr12 32072045 32076686 -111709769 + L1PA12 LINE L1 1 6008 -1576 1599 224 83 13 chr12 32076705 32076965 -111709490 - MLT1C LTR MaLR -4 463 166 309 26 0 0 chr12 32076965 32077003 -111709452 + (TG)n Simple_repeat Simple_repeat 2 39 0 1599 224 83 13 chr12 32077003 32077126 -111709329 - MLT1C LTR MaLR -301 166 53 333 350 86 27 chr12 32077360 32077546 -111708909 + MIR SINE MIR 16 212 -50 339 200 133 0 chr12 32078079 32078169 -111708286 + MIR SINE MIR 73 174 -88 1118 186 95 113 chr12 32078169 32078539 -111707916 - MLT1B LTR MaLR 0 390 28 2015 129 25 0 chr12 32078552 32078857 -111707598 + AluSq SINE Alu 1 312 0 280 304 207 4 chr12 32079253 32079519 -111706936 + L2 LINE L2 2643 2962 -352 569 183 63 40 chr12 32079967 32080093 -111706362 + L2 LINE L2 3140 3268 -4 2382 190 66 0 chr12 32080115 32080254 -111706201 + L1MB3 LINE L1 5681 5809 -374 2840 16 0 0 chr12 32080254 32080565 -111705890 + AluY SINE Alu 1 311 0 2382 190 66 0 chr12 32080565 32080894 -111705561 + L1MB3 LINE L1 5809 6180 -3 402 264 214 11 chr12 32081277 32081455 -111705000 + MLT1H1 LTR MaLR 5 218 -377 458 249 90 48 chr12 32081567 32081756 -111704699 + MLT1H1 LTR MaLR 358 554 -1 214 182 18 73 chr12 32082015 32082070 -111704385 - L2 LINE L2 0 3313 3262 2181 98 0 3 chr12 32084506 32084791 -111701664 - AluSg SINE Alu -26 284 1 1964 253 80 30 chr12 32085759 32086324 -111700131 + MLT1E LTR MaLR 1 593 0 261 319 92 25 chr12 32086669 32086788 -111699667 - MER91A DNA MER1_type -69 127 1 302 222 0 16 chr12 32086935 32086998 -111699457 + L2 LINE L2 3237 3298 -15 260 236 0 0 chr12 32087320 32087375 -111699080 - L2 LINE L2 -332 2981 2927 427 231 175 6 chr12 32087420 32087580 -111698875 - LTR50 LTR ERVL -19 776 590 659 221 56 10 chr12 32087750 32087948 -111698507 - LTR41 LTR ERVL -575 220 1 9537 295 59 27 chr12 32088288 32090168 -111696287 - ERVL LTR ERVL -394 5370 3551 6728 143 98 26 chr12 32090168 32091360 -111695095 + MER52C LTR ERV1 1 1278 0 9537 295 59 27 chr12 32091360 32093019 -111693436 - ERVL LTR ERVL -2213 3551 1719 823 202 48 12 chr12 32093020 32093188 -111693267 - MER58B DNA MER1_type 0 341 168 334 312 25 13 chr12 32095026 32095183 -111691272 + Charlie2 DNA MER1_type 165 323 -2459 2253 263 122 9 chr12 32095183 32095984 -111690471 + L1ME3A LINE L1 45 936 -5460 1104 275 117 5 chr12 32095988 32096414 -111690041 + L1ME2 LINE L1 5672 6145 -19 515 299 89 54 chr12 32096445 32096894 -111689561 + L1ME3A LINE L1 5407 5839 -400 2080 128 0 7 chr12 32096894 32097199 -111689256 + AluSx SINE Alu 1 303 -9 1997 125 21 0 chr12 32097203 32097491 -111688964 + AluSx SINE Alu 3 296 -16 515 299 89 54 chr12 32097491 32097645 -111688810 + L1ME3A LINE L1 5841 6036 -203 2448 147 70 2 chr12 32098889 32099290 -111687165 - MSTA LTR MaLR 0 428 1 2632 40 3 0 chr12 32100454 32100755 -111685700 + L1PA4 LINE L1 5852 6153 -2 1654 136 4 12 chr12 32101109 32101367 -111685088 + AluSq SINE Alu 41 296 -17 493 278 183 6 chr12 32101504 32101684 -111684771 + MIR SINE MIR 23 234 -28 821 108 0 0 chr12 32102177 32102297 -111684158 + L1MA9 LINE L1 6189 6308 -4 241 146 0 36 chr12 32103095 32103150 -111683305 - L1M4 LINE L1 -1962 4184 4132 738 180 42 58 chr12 32103405 32103561 -111682894 + LTR41 LTR ERVL 2 156 -617 2035 77 0 33 chr12 32103561 32103833 -111682622 - AluY SINE Alu -12 299 37 738 180 42 58 chr12 32103833 32103865 -111682590 + LTR41 LTR ERVL 156 187 -586 863 187 14 126 chr12 32104031 32104325 -111682130 + LTR41 LTR ERVL 506 766 -7 2104 112 0 3 chr12 32105393 32105701 -111680754 + AluY SINE Alu 1 307 0 2179 222 76 17 chr12 32106422 32106948 -111679507 - MER77 LTR ERV1 -8 597 41 21 36 0 0 chr12 32107616 32107644 -111678811 + AT_rich Low_complexity Low_complexity 1 28 0 208 359 94 8 chr12 32108271 32108399 -111678056 - L2 LINE L2 -347 2966 2828 322 255 108 0 chr12 32108523 32108625 -111677830 + MIR SINE MIR 125 237 -25 21 0 0 0 chr12 32109071 32109092 -111677363 + AT_rich Low_complexity Low_complexity 1 21 0 463 232 36 0 chr12 32109220 32109332 -111677123 - MIR SINE MIR -63 199 84 3274 96 38 2 chr12 32109486 32109933 -111676522 + L1PA13 LINE L1 5699 6161 -2 3552 259 81 10 chr12 32111235 32111959 -111674496 - L1MD3 LINE L1 -70 7925 7083 2076 135 0 3 chr12 32111959 32112248 -111674207 - AluSx SINE Alu -24 288 1 3552 259 81 10 chr12 32112248 32112711 -111673744 - L1MD3 LINE L1 -912 7083 6654 23 0 0 0 chr12 32112743 32112766 -111673689 + GC_rich Low_complexity Low_complexity 1 23 0 385 268 31 0 chr12 32114046 32114143 -111672312 + MIR SINE MIR 57 156 -106 627 303 44 4 chr12 32114146 32114374 -111672081 - MIR SINE MIR -16 246 10 257 242 11 0 chr12 32115328 32115419 -111671036 + A-rich Low_complexity Low_complexity 2 93 0 1407 142 86 44 chr12 32115787 32116195 -111670260 - Charlie1a DNA MER1_type -34 1421 997 5357 21 0 6 chr12 32116195 32116850 -111669605 - L1PA2 LINE L1 0 6155 5538 3368 28 0 0 chr12 32116850 32117274 -111669181 + L1P LINE L1 4828 5251 -895 3625 186 114 19 chr12 32117274 32117613 -111668842 - Charlie1a DNA MER1_type -1754 1007 702 1955 181 39 100 chr12 32117613 32118203 -111668252 - MLT2B3 LTR ERVL 0 554 1 3625 186 114 19 chr12 32118203 32118782 -111667673 - Charlie1a DNA MER1_type -2059 702 1 31 26 0 0 chr12 32119600 32119638 -111666817 + AT_rich Low_complexity Low_complexity 1 38 0 397 339 113 8 chr12 32120215 32120472 -111665983 + MLT1H1 LTR MaLR 20 303 -252 670 224 5 82 chr12 32120485 32120681 -111665774 + LTR41 LTR ERVL 10 190 -583 339 242 128 20 chr12 32120969 32121118 -111665337 + LTR41 LTR ERVL 606 770 -3 424 339 5 5 chr12 32121500 32121692 -111664763 + HERVL LTR ERVL 427 618 -5036 921 339 33 28 chr12 32121756 32122400 -111664055 + HERVL LTR ERVL 785 1431 -4333 2393 75 3 0 chr12 32122754 32123049 -111663406 - AluY SINE Alu -15 296 1 488 273 111 35 chr12 32123204 32123402 -111663053 - MIR SINE MIR -30 232 20 1366 151 52 116 chr12 32123439 32123964 -111662491 - MER4C LTR ERV1 0 465 58 360 0 0 0 chr12 32123964 32124004 -111662451 + (TG)n Simple_repeat Simple_repeat 1 40 0 1366 151 52 116 chr12 32124004 32124059 -111662396 - MER4C LTR ERV1 -407 58 1 7454 175 74 51 chr12 32124063 32127333 -111659122 - MER4C-int LTR ERV1 -2 6596 2810 480 188 7 69 chr12 32127339 32127660 -111658795 - MER4A LTR ERV1 -238 348 1 1043 227 26 0 chr12 32127682 32127946 -111658509 + L1MB5 LINE L1 5566 5836 -338 1812 148 92 22 chr12 32127946 32128305 -111658150 - LTR26B LTR ERV1 0 531 148 235 100 200 0 chr12 32128305 32128355 -111658100 - LTR26B LTR ERV1 -343 188 129 8349 152 23 23 chr12 32128356 32129905 -111656550 - L1P LINE L1 -4587 1559 11 673 239 5 73 chr12 32130150 32130368 -111656087 - LTR26 LTR ERV1 0 603 401 4108 108 12 0 chr12 32130381 32130973 -111655482 - L1PA10 LINE L1 -11 6472 5874 4500 57 3 0 chr12 32131006 32131588 -111654867 - LTR8 LTR ERV1 -107 584 1 33749 69 16 12 chr12 32131589 32136405 -111650050 - HUERS-P1 LTR ERV1 -1 6262 1427 5995 104 36 2 chr12 32136409 32137296 -111649159 - HUERS-P1 LTR ERV1 -5346 917 1 996 112 0 0 chr12 32137297 32137440 -111649015 - LTR8 LTR ERV1 -1 690 548 21526 190 23 22 chr12 32137440 32140443 -111646012 - L1PA10 LINE L1 -743 5718 2576 2377 107 0 3 chr12 32140443 32140752 -111645703 - AluY SINE Alu -3 308 1 21526 190 23 22 chr12 32140752 32143098 -111643357 - L1PA10 LINE L1 -3885 2576 234 393 145 0 26 chr12 32143075 32143185 -111643270 + L1PA10 LINE L1 6074 6181 0 * 718 150 7 54 chr12 32143185 32143332 -111643123 + L1MCa LINE L1 472 611 -5815 4623 243 19 10 chr12 32143377 32144729 -111641726 + L1MC1 LINE L1 3884 5248 -898 565 150 230 0 chr12 32144729 32144829 -111641626 + FLAM_C SINE Alu 1 123 -20 5269 144 16 25 chr12 32144851 32144935 -111641520 + L1MC1 LINE L1 5254 5337 -996 1636 186 10 10 chr12 32144935 32145225 -111641230 + AluJb SINE Alu 3 292 -20 5269 144 16 25 chr12 32145225 32146112 -111640343 + L1MC1 LINE L1 5337 6217 -116 867 236 130 95 chr12 32146112 32146650 -111639805 - MER34B LTR ERV1 0 565 9 667 171 0 8 chr12 32146670 32146793 -111639662 + L1MC1 LINE L1 6212 6333 0 1112 179 130 3 chr12 32146806 32147113 -111639342 + MER45R DNA AcHobo 1233 1578 -3 309 263 13 0 chr12 32147309 32147385 -111639070 - L1MC5 LINE L1 -179 7782 7706 182 36 0 36 chr12 32148357 32148385 -111638070 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 203 179 0 0 chr12 32148567 32148606 -111637849 + T-rich Low_complexity Low_complexity 1 39 0 2160 122 0 7 chr12 32148647 32148951 -111637504 + AluSx SINE Alu 1 302 -10 368 275 10 62 chr12 32149275 32149468 -111636987 - L1MC5 LINE L1 -63 7898 7716 1435 173 0 60 chr12 32149469 32149753 -111636702 - AluSx SINE Alu -9 303 37 842 222 104 32 chr12 32149769 32150210 -111636245 - L1MC5 LINE L1 -234 7727 7255 2226 99 0 0 chr12 32150397 32150712 -111635743 + AluY SINE Alu 1 315 0 1078 149 6 0 chr12 32150715 32150883 -111635572 + AluSc SINE Alu 133 301 -8 2147 142 66 57 chr12 32151020 32151444 -111635011 - MSTA LTR MaLR 0 428 1 2775 142 35 12 chr12 32151790 32152276 -111634179 + LOR1a LTR ERV1 1 497 0 21303 121 38 42 chr12 32152277 32153096 -111633359 + LOR1a-int LTR ERV1 2 823 -7297 531 0 0 0 chr12 32153096 32153155 -111633300 + (TG)n Simple_repeat Simple_repeat 2 60 0 21303 121 38 42 chr12 32153155 32155175 -111631280 + LOR1a-int LTR ERV1 823 2850 -5270 2016 141 0 0 chr12 32155175 32155501 -111630954 + AluSx SINE Alu 1 326 0 21303 121 38 42 chr12 32155501 32155571 -111630884 + LOR1a-int LTR ERV1 2850 2919 -5201 248 28 56 0 chr12 32155571 32155607 -111630848 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 21303 121 38 42 chr12 32155607 32155640 -111630815 + LOR1a-int LTR ERV1 2919 2951 -5169 2026 137 0 3 chr12 32155640 32155932 -111630523 - AluSx SINE Alu -21 291 1 21303 121 38 42 chr12 32155932 32156423 -111630032 + LOR1a-int LTR ERV1 2951 3443 -4677 1697 176 0 14 chr12 32156423 32156702 -111629753 + AluJb SINE Alu 13 287 -25 21303 121 38 42 chr12 32156702 32157325 -111629130 + LOR1a-int LTR ERV1 3443 4046 -4074 1083 252 19 4 chr12 32157429 32157695 -111628760 - LTR43 LTR ERV1 -141 461 192 264 135 19 0 chr12 32157881 32157933 -111628522 - LTR60 LTR ERV1 -531 55 3 2120 123 14 113 chr12 32158740 32159229 -111627226 - HUERS-P2 LTR ERV1 -2772 3174 2796 937 171 12 43 chr12 32159221 32159477 -111626978 - HUERS-P2 LTR ERV1 -4917 2040 1815 * 267 343 0 0 chr12 32160070 32160172 -111626283 - HUERS-P2 LTR ERV1 -1089 1999 1898 489 279 6 6 chr12 32160354 32160512 -111625943 - HUERS-P2 LTR ERV1 -5229 1862 1705 2174 170 45 16 chr12 32160675 32161123 -111625332 - LOR1b LTR ERV1 0 461 1 578 193 70 29 chr12 32162145 32162316 -111624139 - HUERS-P2 LTR ERV1 -3536 1262 1085 1018 258 106 11 chr12 32162504 32162873 -111623582 - LTR43 LTR ERV1 -20 582 179 353 132 15 0 chr12 32163049 32163117 -111623338 - LTR60 LTR ERV1 -517 69 1 8780 118 16 6 chr12 32163117 32164584 -111621871 + LOR1a-int LTR ERV1 4042 5524 -2596 1422 167 4 4 chr12 32164574 32164838 -111621617 + LOR1a-int LTR ERV1 5801 6064 -2056 * 371 75 150 12 chr12 32164837 32164917 -111621538 + LOR1a-int LTR ERV1 8030 8120 0 * 2841 146 22 14 chr12 32164917 32165137 -111621318 + LOR1a LTR ERV1 1 218 -279 2206 128 51 14 chr12 32165137 32165488 -111620967 + THE1B LTR MaLR 1 364 0 2841 146 22 14 chr12 32165488 32165760 -111620695 + LOR1a LTR ERV1 218 497 0 733 121 7 57 chr12 32166000 32166141 -111620314 - L1PA16 LINE L1 0 6166 6033 290 214 14 0 chr12 32166218 32166288 -111620167 - L1PA16 LINE L1 -173 5993 5923 7962 190 24 19 chr12 32166302 32167341 -111619114 - L1PA16 LINE L1 -9 6157 5124 2280 112 0 6 chr12 32167341 32167653 -111618802 - AluY SINE Alu -1 310 1 7962 190 24 19 chr12 32167653 32169537 -111616918 - L1PA16 LINE L1 -1042 5124 3230 744 301 60 0 chr12 32169555 32169871 -111616584 - L1 LINE L1 -3314 2832 2498 2079 169 9 0 chr12 32170456 32170788 -111615667 - MER1B DNA MER1_type -2 335 1 2257 112 3 13 chr12 32170891 32171203 -111615252 + AluSx SINE Alu 1 309 -3 2087 119 3 3 chr12 32171352 32171647 -111614808 + AluY SINE Alu 1 295 -16 248 369 36 0 chr12 32171853 32171964 -111614491 - L2 LINE L2 -7 3306 3192 282 247 11 11 chr12 32171977 32172070 -111614385 + (TA)n Simple_repeat Simple_repeat 1 93 0 557 246 93 7 chr12 32172079 32172315 -111614140 - L2 LINE L2 -161 3152 2832 2231 96 0 16 chr12 32172315 32172618 -111613837 + AluY SINE Alu 1 298 -13 1873 108 8 0 chr12 32173009 32173259 -111613196 - AluSc SINE Alu -14 295 44 26 30 0 0 chr12 32173304 32173337 -111613118 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 32174391 32174419 -111612036 + AT_rich Low_complexity Low_complexity 1 28 0 2132 214 48 53 chr12 32175029 32175398 -111611057 - MLT1E LTR MaLR -8 585 219 1836 100 0 38 chr12 32175398 32175535 -111610920 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 32175535 32175834 -111610621 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 32175834 32175986 -111610469 + L1MA1 LINE L1 6140 6296 -6 2132 214 48 53 chr12 32175986 32176200 -111610255 - MLT1E LTR MaLR -374 219 5 3956 259 102 32 chr12 32177167 32179064 -111607391 + L2 LINE L2 1206 3313 0 229 273 0 0 chr12 32180067 32180122 -111606333 + L2 LINE L2 3213 3267 -5 189 171 0 0 chr12 32180922 32180957 -111605498 + T-rich Low_complexity Low_complexity 1 35 0 411 222 22 11 chr12 32181475 32181565 -111604890 + MIR3 SINE MIR 93 183 -25 186 43 0 0 chr12 32181959 32181982 -111604473 + (CAT)n Simple_repeat Simple_repeat 2 24 0 4623 72 0 0 chr12 32182072 32182702 -111603753 + L1PA7 LINE L1 5543 6172 0 795 223 17 19 chr12 32183508 32183776 -111602679 + MER83B LTR ERV1 96 365 -12 1904 151 0 13 chr12 32184573 32184884 -111601571 + AluJb SINE Alu 1 307 -5 1136 226 224 18 chr12 32185180 32185598 -111600857 + L2 LINE L2 2303 2816 -498 2896 141 60 0 chr12 32185598 32186067 -111600388 + LOR1a LTR ERV1 1 497 0 1136 226 224 18 chr12 32186067 32186086 -111600369 + L2 LINE L2 2816 2830 -484 2001 154 9 12 chr12 32186094 32186439 -111600016 + LOR1a-int LTR ERV1 28 371 -7749 4595 120 72 16 chr12 32186451 32187274 -111599181 + MER83B-int LTR ERV1 203 1071 -7049 * 8956 101 12 20 chr12 32187273 32187285 -111599170 + MER83B-int LTR ERV1 2004 2015 -6105 4460 148 61 8 chr12 32187285 32188069 -111598386 + LTR1B LTR ERV1 1 826 0 8956 101 12 20 chr12 32188069 32189015 -111597440 + MER83B-int LTR ERV1 2015 2950 -5170 2175 128 0 22 chr12 32189015 32189334 -111597121 + AluSx SINE Alu 1 312 0 8956 101 12 20 chr12 32189334 32189840 -111596615 + MER83B-int LTR ERV1 2950 3458 -4662 7589 106 27 7 chr12 32189838 32191790 -111594665 + MER83B-int LTR ERV1 3503 5524 -2596 * 1437 97 113 4 chr12 32191780 32192018 -111594437 + MER83B-int LTR ERV1 5801 6064 -2056 * 530 139 0 0 chr12 32192017 32192103 -111594352 + LOR1a-int LTR ERV1 8030 8115 -5 * 3247 128 2 10 chr12 32192112 32192613 -111593842 + LOR1a LTR ERV1 1 497 0 685 232 79 116 chr12 32192636 32192986 -111593469 + L2 LINE L2 2817 3146 -167 2233 116 0 0 chr12 32192986 32193278 -111593177 - AluSg SINE Alu -18 292 1 685 232 79 116 chr12 32193278 32193409 -111593046 + L2 LINE L2 3146 3280 -33 2158 126 7 0 chr12 32193725 32194034 -111592421 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 32194112 32194144 -111592311 + AT_rich Low_complexity Low_complexity 1 32 0 255 335 33 20 chr12 32194747 32194899 -111591556 + L3b LINE CR1 1241 1394 -189 25947 30 3 1 chr12 32194920 32198830 -111587625 - L1PA4 LINE L1 -3 6152 2237 29 0 0 0 chr12 32201558 32201587 -111584868 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 32203178 32203206 -111583249 + AT_rich Low_complexity Low_complexity 1 28 0 518 91 131 0 chr12 32203607 32203706 -111582749 + LTR38 LTR ERV1 1 112 -444 461 231 6 64 chr12 32203763 32203919 -111582536 - L2 LINE L2 -5 3308 3162 271 298 41 50 chr12 32206277 32206398 -111580057 - L2 LINE L2 0 3272 3153 22 56 0 0 chr12 32206454 32206490 -111579965 + AT_rich Low_complexity Low_complexity 1 36 0 228 271 35 12 chr12 32206497 32206579 -111579876 - MIR SINE MIR 0 262 179 498 311 123 21 chr12 32206579 32206814 -111579641 + MIR SINE MIR 1 259 -3 2183 141 2 72 chr12 32207175 32207351 -111579104 + MLT1B LTR MaLR 1 188 -202 2256 94 3 3 chr12 32207351 32207649 -111578806 + AluSq SINE Alu 1 298 -15 2183 141 2 72 chr12 32207649 32207891 -111578564 + MLT1B LTR MaLR 188 390 0 22 0 0 0 chr12 32208691 32208713 -111577742 + AT_rich Low_complexity Low_complexity 1 22 0 203 309 36 24 chr12 32208970 32209054 -111577401 + MIR3 SINE MIR 72 156 -52 286 211 0 48 chr12 32209267 32209371 -111577084 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 21 36 0 0 chr12 32209390 32209418 -111577037 + AT_rich Low_complexity Low_complexity 1 28 0 2388 129 32 10 chr12 32210298 32210708 -111575747 + L1MB2 LINE L1 5746 6164 -7 729 246 41 17 chr12 32210735 32211036 -111575419 + L1MB8 LINE L1 5875 6178 0 528 326 30 38 chr12 32211566 32211965 -111574490 + L1ME LINE L1 24 419 -6004 688 313 73 15 chr12 32212264 32212992 -111573463 + L1ME LINE L1 1121 1895 -4887 871 263 81 11 chr12 32212993 32213345 -111573110 + L1ME LINE L1 5702 6106 -851 2827 154 63 0 chr12 32213345 32213833 -111572622 + LTR44 LTR ERV1 1 519 0 871 263 81 11 chr12 32213833 32214057 -111572398 + L1ME LINE L1 6106 6313 -644 426 267 31 97 chr12 32214267 32214366 -111572089 + L2 LINE L2 2978 3082 -231 2282 92 0 0 chr12 32214366 32214680 -111571775 + AluSx SINE Alu 1 314 0 426 267 31 97 chr12 32214680 32214837 -111571618 + L2 LINE L2 3082 3218 -95 1465 211 56 30 chr12 32214837 32215263 -111571192 + MLT1C LTR MaLR 6 442 -25 323 294 0 20 chr12 32215291 32215393 -111571062 + L2 LINE L2 3209 3308 -5 908 206 16 0 chr12 32215448 32215632 -111570823 - MER58A DNA MER1_type 0 224 38 180 125 0 0 chr12 32216316 32216348 -111570107 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 206 292 14 0 chr12 32216356 32216428 -111570027 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1767 112 97 4 chr12 32217527 32217794 -111568661 - AluSg SINE Alu -18 292 1 895 102 12 42 chr12 32217795 32217962 -111568493 + L1MA7 LINE L1 6128 6289 -2 29 78 0 0 chr12 32217963 32218027 -111568428 + AT_rich Low_complexity Low_complexity 1 64 0 904 216 7 64 chr12 32218553 32218835 -111567620 - L1MA10 LINE L1 -4 6330 6065 285 29 0 0 chr12 32218835 32218869 -111567586 + (TC)n Simple_repeat Simple_repeat 1 34 0 2212 102 0 0 chr12 32218874 32219159 -111567296 - AluSx SINE Alu -27 285 1 685 219 0 0 chr12 32219166 32219321 -111567134 - L1 LINE L1 -1278 4932 4778 1385 226 91 8 chr12 32219329 32219692 -111566763 - L1 LINE L1 -5748 393 1 1683 106 57 0 chr12 32220771 32221175 -111565280 - L1PA16 LINE L1 -9 6157 5683 1593 144 26 103 chr12 32221404 32221821 -111564634 + MLT1B LTR MaLR 1 385 -5 509 264 9 0 chr12 32223011 32223121 -111563334 + MIR SINE MIR 28 138 -124 349 293 60 0 chr12 32223957 32224073 -111562382 - MIR SINE MIR -110 152 30 956 201 77 14 chr12 32224595 32224804 -111561651 + MER58A DNA MER1_type 3 224 0 699 259 0 46 chr12 32225036 32225248 -111561207 + MIR SINE MIR 45 242 -20 22 0 0 0 chr12 32225454 32225476 -111560979 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 3 0 chr12 32225567 32225863 -111560592 + AluY SINE Alu 1 297 -14 2508 176 62 10 chr12 32225951 32226434 -111560021 + MLT2B3 LTR ERVL 1 508 -46 261 0 0 0 chr12 32226435 32226464 -111559991 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 13798 116 39 36 chr12 32226464 32227577 -111558878 - Tigger1 DNA MER2_type 0 2418 1310 699 118 0 0 chr12 32227577 32227712 -111558743 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 13798 116 39 36 chr12 32227712 32227733 -111558722 - Tigger1 DNA MER2_type -1108 1310 1291 2327 95 0 3 chr12 32227733 32228027 -111558428 - AluY SINE Alu -18 293 1 13798 116 39 36 chr12 32228027 32229279 -111557176 - Tigger1 DNA MER2_type -1127 1291 24 235 206 127 0 chr12 32229282 32229345 -111557110 + MLT2B1 LTR ERVL 444 514 -6 658 172 11 81 chr12 32230359 32230533 -111555922 - MLT1C LTR MaLR 0 467 306 312 275 80 46 chr12 32230641 32230943 -111555512 + L1ME LINE L1 5265 5576 -586 4475 180 60 4 chr12 32230999 32232819 -111553636 - L1MA4A LINE L1 -20 6283 4367 624 177 190 41 chr12 32232911 32233206 -111553249 - MER52A LTR ERV1 -147 970 283 934 167 11 80 chr12 32233307 32233498 -111552957 - L1MA4A LINE L1 -1779 4367 4197 2615 65 0 0 chr12 32233498 32233807 -111552648 - AluY SINE Alu -2 309 1 934 167 11 80 chr12 32233807 32233878 -111552577 - L1MA4A LINE L1 -1949 4197 4123 859 240 115 5 chr12 32234042 32234259 -111552196 + MIR SINE MIR 22 262 0 4751 177 23 10 chr12 32234470 32235376 -111551079 + MER49 LTR ERV1 6 923 0 269 206 0 14 chr12 32235751 32235824 -111550631 + GA-rich Low_complexity Low_complexity 3 74 0 189 74 0 0 chr12 32235969 32235996 -111550459 + (TC)n Simple_repeat Simple_repeat 1 27 0 12585 151 45 6 chr12 32236127 32236810 -111549645 + L1MA2 LINE L1 2593 3248 -3056 2280 102 0 7 chr12 32236810 32237103 -111549352 + AluSg SINE Alu 1 291 -19 12585 151 45 6 chr12 32237103 32240003 -111546452 + L1MA2 LINE L1 3248 6304 0 457 337 128 32 chr12 32240057 32240431 -111546024 + L2 LINE L2 2857 3266 -6 1890 134 80 11 chr12 32242605 32242956 -111543499 + THE1C LTR MaLR 1 375 0 2161 138 0 0 chr12 32243770 32244067 -111542388 + AluSx SINE Alu 1 297 -15 278 123 18 0 chr12 32244937 32244994 -111541461 + GA-rich Low_complexity Low_complexity 2 59 0 207 0 0 0 chr12 32245029 32245052 -111541403 + (CTTTG)n Simple_repeat Simple_repeat 4 26 0 24 53 0 0 chr12 32246895 32246933 -111539522 + AT_rich Low_complexity Low_complexity 1 38 0 260 269 172 11 chr12 32247663 32247756 -111538699 + MIR SINE MIR 120 227 -35 1119 281 110 29 chr12 32247791 32248480 -111537975 + L2 LINE L2 2540 3307 -6 215 256 140 10 chr12 32249040 32249144 -111537311 - MIR SINE MIR -67 141 28 2258 116 0 0 chr12 32250197 32250498 -111535957 - AluSx SINE Alu -11 301 1 21 82 0 0 chr12 32250869 32250918 -111535537 + AT_rich Low_complexity Low_complexity 1 49 0 2170 114 7 0 chr12 32252868 32253174 -111533281 + AluSg SINE Alu 1 308 -2 26 82 0 0 chr12 32254519 32254580 -111531875 + AT_rich Low_complexity Low_complexity 1 61 0 290 175 79 16 chr12 32255001 32255064 -111531391 + MER103 DNA DNA 4 70 -96 1546 186 0 19 chr12 32255119 32255388 -111531067 + AluJo SINE Alu 39 302 -10 2963 103 26 7 chr12 32256045 32256509 -111529946 - L1MA2 LINE L1 0 6304 5832 2329 89 0 0 chr12 32256889 32257192 -111529263 + AluY SINE Alu 1 303 -8 26 74 0 0 chr12 32257687 32257741 -111528714 + AT_rich Low_complexity Low_complexity 1 54 0 287 279 25 0 chr12 32257884 32257963 -111528492 - MIR SINE MIR -71 137 57 215 348 114 38 chr12 32258104 32258262 -111528193 - MIR SINE MIR -59 203 34 6785 125 54 4 chr12 32258354 32259527 -111526928 + Tigger3b DNA MER2_type 1 1231 0 32 57 0 0 chr12 32259752 32259805 -111526650 + AT_rich Low_complexity Low_complexity 1 53 0 2111 113 0 0 chr12 32259856 32260138 -111526317 - AluSx SINE Alu -30 282 1 670 214 169 4 chr12 32260202 32260468 -111525987 + LTR37A LTR ERV1 115 424 -2 2362 82 3 25 chr12 32260590 32260908 -111525547 + AluY SINE Alu 1 311 0 1720 175 86 6 chr12 32260925 32261263 -111525192 + MLT1A1 LTR MaLR 1 365 0 2217 112 0 0 chr12 32263460 32263763 -111522692 + AluSx SINE Alu 1 303 -9 228 220 160 20 chr12 32266138 32266238 -111520217 - MIR3 SINE MIR -92 116 3 315 300 0 11 chr12 32266426 32266516 -111519939 + L1MEc LINE L1 2236 2324 -4072 271 146 0 0 chr12 32266517 32266558 -111519897 + 5S rRNA rRNA 2 42 -79 897 180 90 86 chr12 32266634 32266912 -111519543 - MLT1B LTR MaLR -96 294 16 701 212 6 6 chr12 32266925 32267090 -111519365 - L1ME2 LINE L1 -2 6162 5998 335 123 231 0 chr12 32267124 32267189 -111519266 + MADE1 DNA Mariner 1 80 0 190 288 62 12 chr12 32267228 32267308 -111519147 + MIR SINE MIR 57 140 -122 415 316 59 11 chr12 32267586 32267773 -111518682 - MIR SINE MIR -10 252 57 1624 184 33 11 chr12 32268932 32269255 -111517200 + MER61B LTR ERV1 2 425 0 3964 173 38 20 chr12 32269566 32270276 -111516179 - MER21B LTR ERV1 -2 861 139 1915 194 13 18 chr12 32270269 32270651 -111515804 + MER65C LTR ERV1 82 461 0 * 2005 171 21 16 chr12 32271161 32271587 -111514868 + L1M4c LINE L1 834 1261 -5123 1490 159 0 4 chr12 32271705 32271932 -111514523 - L1P3 LINE L1 -6226 235 10 684 230 9 74 chr12 32272178 32272395 -111514060 - LTR26 LTR ERV1 0 603 401 2899 152 19 6 chr12 32272399 32272912 -111513543 - L1PA10 LINE L1 0 6168 5649 420 226 0 0 chr12 32273019 32273174 -111513281 + C-rich Low_complexity Low_complexity 1 155 0 3243 175 23 65 chr12 32273334 32274077 -111512378 + MER34B-int LTR ERV1 5887 6598 0 342 0 0 0 chr12 32274137 32274175 -111512280 + (CA)n Simple_repeat Simple_repeat 1 38 0 1839 64 8 0 chr12 32274516 32274750 -111511705 + L1PA7 LINE L1 5919 6154 0 403 275 0 40 chr12 32275042 32275191 -111511264 + AluJo SINE Alu 1 143 -159 682 160 50 0 chr12 32375586 32375705 -111410750 + FLAM_C SINE Alu 1 125 -18 798 269 105 61 chr12 32375771 32376277 -111410178 - MLT1K LTR MaLR -4 584 57 2280 105 0 0 chr12 32376374 32376668 -111409787 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 32376769 32377114 -111409341 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 32377377 32377449 -111409006 + MIR3 SINE MIR 133 200 -8 2427 79 7 0 chr12 32377787 32378090 -111408365 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 32378597 32378906 -111407549 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 32379165 32379230 -111407225 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 32379233 32379481 -111406974 + AluY SINE Alu 57 301 -10 2237 112 6 10 chr12 32379492 32379838 -111406617 + AluSx SINE Alu 1 345 0 2018 209 87 27 chr12 32379838 32380388 -111406067 + MER92B LTR ERV1 54 636 0 751 293 35 4 chr12 32380566 32380798 -111405657 - MIR SINE MIR -18 244 6 355 228 105 18 chr12 32380938 32381052 -111405403 + MER34B LTR ERV1 1 124 -441 2955 93 42 9 chr12 32381147 32381192 -111405263 - MLT2A1 LTR ERVL 0 444 402 672 99 0 0 chr12 32381192 32381303 -111405152 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 32381303 32381687 -111404768 - MLT2A1 LTR ERVL -42 402 1 527 267 35 53 chr12 32381687 32381972 -111404483 + MER34B LTR ERV1 286 565 0 1197 249 61 32 chr12 32381973 32382383 -111404072 + MER90 LTR ERV1 106 527 -87 2302 97 13 3 chr12 32382589 32382898 -111403557 - AluSx SINE Alu 0 312 1 780 169 0 0 chr12 32383257 32383387 -111403068 + FRAM SINE Alu 38 167 -9 2403 90 40 3 chr12 32383387 32383733 -111402722 + L1PA11 LINE L1 5814 6172 -2 2239 114 3 0 chr12 32383733 32384031 -111402424 + AluSq SINE Alu 1 299 -14 434 132 44 0 chr12 32384034 32384102 -111402353 - MLT1A2 LTR MaLR -303 71 1 1560 160 4 0 chr12 32384126 32384389 -111402066 - L1MA6 LINE L1 0 6300 6037 2267 99 0 10 chr12 32384403 32384707 -111401748 + AluSx SINE Alu 1 301 -11 1653 163 52 28 chr12 32384911 32385200 -111401255 + AluJb SINE Alu 1 296 -16 192 125 0 0 chr12 32385300 32385332 -111401123 + (TTTCC)n Simple_repeat Simple_repeat 3 34 0 1042 174 30 52 chr12 32385342 32385572 -111400883 - AluJb SINE Alu -3 309 85 2099 102 7 14 chr12 32385612 32385895 -111400560 - AluSx SINE Alu -31 281 1 485 223 7 4 chr12 32385900 32386028 -111400427 - MSTC LTR MaLR -48 379 220 788 164 7 14 chr12 32386148 32386288 -111400167 - FLAM_C SINE Alu -4 139 1 2237 100 3 7 chr12 32386399 32386699 -111399756 + AluSg SINE Alu 3 301 -9 1678 152 65 7 chr12 32386705 32386813 -111399642 + AluJb SINE Alu 11 111 -201 338 0 24 0 chr12 32386813 32386855 -111399600 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1678 152 65 7 chr12 32386855 32387022 -111399433 + AluJb SINE Alu 111 302 -10 417 39 0 0 chr12 32387450 32387501 -111398954 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 2157 97 7 0 chr12 32387501 32387780 -111398675 - AluSx SINE Alu -31 281 1 206 204 0 19 chr12 32387945 32387999 -111398456 + CT-rich Low_complexity Low_complexity 4 56 0 2234 131 0 3 chr12 32387999 32388312 -111398143 - AluSx SINE Alu 0 312 1 2040 52 0 12 chr12 32388323 32388571 -111397884 - AluY SINE Alu -10 301 57 453 123 0 0 chr12 32388574 32388639 -111397816 - MER92B LTR ERV1 -571 65 1 2230 94 3 29 chr12 32388898 32389207 -111397248 + AluSq SINE Alu 1 301 -12 2373 89 3 0 chr12 32389714 32390018 -111396437 - AluSq SINE Alu -3 310 6 248 208 0 56 chr12 32390357 32390429 -111396026 - MIR3 SINE MIR -8 200 133 2205 130 55 0 chr12 32390692 32391037 -111395418 + THE1B LTR MaLR 1 364 0 2280 105 0 0 chr12 32391138 32391432 -111395023 - AluSx SINE Alu -18 294 1 545 272 47 27 chr12 32391529 32391713 -111394742 + MLT1K LTR MaLR 57 231 -366 1553 143 31 8 chr12 32392003 32392261 -111394194 - L1PA16 LINE L1 -2 6164 5901 347 275 93 65 chr12 32392291 32392441 -111394014 + L1ME4a LINE L1 5751 5895 -226 1464 204 26 16 chr12 32392441 32392750 -111393705 + AluJb SINE Alu 1 312 0 347 275 93 65 chr12 32392750 32392923 -111393532 + L1ME4a LINE L1 5895 6083 -38 2291 94 3 0 chr12 32393186 32393473 -111392982 + AluSx SINE Alu 1 288 -24 394 229 0 0 chr12 32394001 32394084 -111392371 - L1MC5 LINE L1 -72 7889 7807 2142 117 21 0 chr12 32394185 32394476 -111391979 - AluSg SINE Alu -13 297 1 2178 107 3 7 chr12 32394489 32394788 -111391667 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 32394835 32394860 -111391595 + AT_rich Low_complexity Low_complexity 1 25 0 1759 171 33 10 chr12 32394892 32395197 -111391258 + AluJb SINE Alu 1 312 0 1585 189 3 20 chr12 32395681 32395982 -111390473 - AluJo SINE Alu -16 296 1 22 70 0 0 chr12 32396167 32396210 -111390245 + AT_rich Low_complexity Low_complexity 1 43 0 2290 102 5 18 chr12 32396312 32396836 -111389619 - L1PA10 LINE L1 0 6168 5570 45404 34 5 2 chr12 32396849 32402988 -111383467 - L1PA4 LINE L1 -3 6152 1 2057 139 10 0 chr12 32402989 32403284 -111383171 - AluSx SINE Alu -14 298 1 428 114 0 102 chr12 32403379 32403467 -111382988 + FLAM_C SINE Alu 63 141 -2 432 265 88 74 chr12 32403605 32404140 -111382315 + HAL1b LINE L1 1193 1346 -2 1592 131 0 13 chr12 32404160 32404389 -111382066 - AluJb SINE Alu -11 301 76 180 0 0 0 chr12 32404597 32404617 -111381838 + (A)n Simple_repeat Simple_repeat 1 20 0 721 152 30 23 chr12 32404709 32404841 -111381614 + FRAM SINE Alu 24 156 -20 2226 236 87 47 chr12 32406773 32407710 -111378745 + L2 LINE L2 2111 3088 -225 735 211 0 0 chr12 32408123 32408256 -111378199 + FLAM_A SINE Alu 1 133 0 250 193 70 0 chr12 32408492 32408549 -111377906 - L2 LINE L2 -4 3268 3208 254 236 11 45 chr12 32408693 32408782 -111377673 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 32409085 32409107 -111377348 + AT_rich Low_complexity Low_complexity 1 22 0 2016 105 3 18 chr12 32409108 32409394 -111377061 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 32409398 32409432 -111377023 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 32410430 32410454 -111376001 + AT_rich Low_complexity Low_complexity 1 24 0 1999 161 0 3 chr12 32410615 32410914 -111375541 + AluSx SINE Alu 1 298 -14 1835 145 3 0 chr12 32411342 32411665 -111374790 - AluJb SINE Alu 0 324 1 383 164 16 0 chr12 32411810 32411871 -111374584 + MLT1F LTR MaLR 1 62 -480 1237 188 62 5 chr12 32411902 32412126 -111374329 + AluJb SINE Alu 1 237 -75 247 258 106 68 chr12 32412475 32412607 -111373848 + MIR SINE MIR 15 119 -89 1728 175 0 23 chr12 32412637 32412940 -111373515 + AluJb SINE Alu 1 296 -16 989 201 0 0 chr12 32412951 32413115 -111373340 + FAM SINE Alu 1 164 -11 333 0 0 0 chr12 32413116 32413153 -111373302 + (TG)n Simple_repeat Simple_repeat 2 38 0 698 167 0 0 chr12 32413269 32413389 -111373066 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 32413389 32413422 -111373033 + AT_rich Low_complexity Low_complexity 1 33 0 501 196 0 0 chr12 32413654 32413746 -111372709 + AluSg/x SINE Alu 130 221 -91 589 152 0 19 chr12 32413814 32413919 -111372536 + MER65A LTR ERV1 343 445 0 1097 163 0 0 chr12 32413949 32414115 -111372340 + AluJb SINE Alu 133 298 -14 680 78 0 0 chr12 32414239 32414329 -111372126 + AluSg/x SINE Alu 211 300 -9 289 339 0 16 chr12 32414329 32414456 -111371999 + L2 LINE L2 2623 2747 -567 941 161 0 25 chr12 32414456 32414617 -111371838 + FRAM SINE Alu 10 166 -10 762 127 8 45 chr12 32414651 32414785 -111371670 - FLAM_C SINE Alu -13 130 2 1889 132 132 0 chr12 32414844 32415163 -111371292 + MER46B DNA MER2_type 1 236 0 682 187 8 37 chr12 32415701 32415835 -111370620 - FLAM_A SINE Alu -3 130 1 1868 154 20 10 chr12 32415843 32416148 -111370307 - AluJb SINE Alu -4 308 1 1873 161 3 14 chr12 32416312 32416603 -111369852 + AluSx SINE Alu 1 288 -24 2223 107 0 19 chr12 32416699 32417016 -111369439 + AluY SINE Alu 1 311 0 192 231 15 15 chr12 32417121 32417186 -111369269 - L2 LINE L2 -276 2996 2932 290 297 232 14 chr12 32417210 32417486 -111368969 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 32417579 32417875 -111368580 + AluJb SINE Alu 1 297 -15 1584 136 21 4 chr12 32418462 32418705 -111367750 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 32418767 32418827 -111367628 + GA-rich Low_complexity Low_complexity 4 65 0 646 205 0 8 chr12 32419672 32419799 -111366656 - AluJo SINE Alu -102 210 85 182 188 0 0 chr12 32420470 32420502 -111365953 + MIR SINE MIR 81 112 -150 1034 104 0 0 chr12 32420661 32420795 -111365660 + AluSq/x SINE Alu 1 134 -179 2046 139 7 7 chr12 32420796 32421105 -111365350 + AluSx SINE Alu 1 309 -3 634 137 8 16 chr12 32421374 32421498 -111364957 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 613 163 43 0 chr12 32421496 32421612 -111364843 - FLAM_A SINE Alu -23 119 6 * 4244 103 44 8 chr12 32421653 32422265 -111364190 + MER51A LTR ERV1 1 634 0 326 285 16 41 chr12 32422532 32422618 -111363837 + MIR SINE MIR 72 156 -106 2504 81 10 0 chr12 32422618 32422927 -111363528 - AluSx SINE Alu 0 312 1 326 285 16 41 chr12 32422927 32422963 -111363492 + MIR SINE MIR 156 191 -71 872 137 0 0 chr12 32423833 32423950 -111362505 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 32423958 32423987 -111362468 + AT_rich Low_complexity Low_complexity 1 29 0 559 102 204 0 chr12 32424908 32424996 -111361459 + AluSg SINE Alu 9 114 -196 560 154 11 33 chr12 32425012 32425194 -111361261 + G-rich Low_complexity Low_complexity 1 178 0 183 80 0 0 chr12 32425209 32425234 -111361221 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2262 124 0 0 chr12 32425918 32426224 -111360231 + AluSx SINE Alu 1 306 -6 1037 132 198 5 chr12 32427236 32427433 -111359022 - MER46A DNA MER2_type 0 236 2 439 138 0 0 chr12 32427511 32427576 -111358879 - MER46A DNA MER2_type -170 66 2 2009 159 7 0 chr12 32427626 32427921 -111358534 + AluSx SINE Alu 1 297 -15 885 212 11 0 chr12 32427931 32428110 -111358345 + L1MC/D LINE L1 5444 5624 -2161 * 1550 148 79 69 chr12 32428099 32428301 -111358154 + L1MC3 LINE L1 7346 7545 -240 2635 116 11 3 chr12 32428301 32428673 -111357782 + THE1C LTR MaLR 1 375 0 1550 148 79 69 chr12 32428673 32428709 -111357746 + L1MC3 LINE L1 7545 7579 -206 2279 116 3 0 chr12 32428709 32429020 -111357435 + AluSq SINE Alu 1 312 -1 1550 148 79 69 chr12 32429020 32429184 -111357271 + L1MC3 LINE L1 7579 7753 -32 2374 86 7 0 chr12 32429253 32429556 -111356899 + AluSg SINE Alu 2 306 -4 1839 153 32 0 chr12 32430495 32430776 -111355679 + AluJb SINE Alu 1 290 -22 380 272 213 30 chr12 32432024 32432292 -111354163 + MLT1J2 LTR MaLR 112 432 -18 2124 128 10 3 chr12 32432458 32432755 -111353700 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 32433038 32433060 -111353395 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1687 171 11 18 chr12 32433061 32433347 -111353108 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 32433493 32433522 -111352933 + AT_rich Low_complexity Low_complexity 1 29 0 778 69 0 0 chr12 32433522 32433623 -111352832 - HY3 scRNA scRNA 0 101 1 1346 271 84 58 chr12 32433698 32434391 -111352064 - MER21B LTR ERV1 -129 734 24 815 217 123 25 chr12 32434418 32434653 -111351802 - AluJo SINE Alu -54 258 1 212 299 37 52 chr12 32436357 32436491 -111349964 + L2 LINE L2 2264 2395 -919 341 170 0 0 chr12 32436557 32436610 -111349845 + Alu SINE Alu 1 53 -250 612 200 82 7 chr12 32436641 32436776 -111349679 + FRAM SINE Alu 20 164 -12 315 186 0 29 chr12 32436783 32436853 -111349602 + MLT1G1 LTR MaLR 486 593 -2 518 256 111 56 chr12 32436855 32437089 -111349366 - L2 LINE L2 -71 3242 2996 680 241 21 21 chr12 32437331 32437518 -111348937 - MLT1E2 LTR MaLR 0 654 468 1135 148 0 0 chr12 32437533 32437702 -111348753 - AluSg/x SINE Alu -10 302 134 1009 229 111 28 chr12 32437702 32438111 -111348344 - MLT1E2 LTR MaLR -185 439 1 1993 125 3 30 chr12 32438168 32438471 -111347984 + AluJo SINE Alu 1 295 -17 231 230 176 54 chr12 32438904 32438978 -111347477 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 32439087 32439123 -111347332 + AT_rich Low_complexity Low_complexity 1 36 0 2332 83 24 0 chr12 32439140 32439430 -111347025 - AluSg SINE Alu -8 302 6 1598 180 0 49 chr12 32439444 32439749 -111346706 - AluJo SINE Alu -22 290 1 4733 158 76 33 chr12 32439976 32441056 -111345399 - L1MC3 LINE L1 0 7785 6656 1917 149 0 33 chr12 32441056 32441358 -111345097 - AluJo SINE Alu -14 298 7 750 218 0 0 chr12 32441461 32441603 -111344852 + Tigger3(Golem) DNA MER2_type 2876 3017 -12 2104 122 3 23 chr12 32441752 32442055 -111344400 + AluSx SINE Alu 1 297 -15 1535 174 60 28 chr12 32442070 32442352 -111344103 + AluJo SINE Alu 3 293 -19 935 187 0 0 chr12 32442377 32442527 -111343928 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 32442556 32442605 -111343850 + AT_rich Low_complexity Low_complexity 1 49 0 1689 165 31 21 chr12 32443421 32443712 -111342743 + AluJb SINE Alu 5 298 -14 932 179 0 34 chr12 32443995 32444174 -111342281 + AluJb SINE Alu 129 301 -11 294 267 91 79 chr12 32445469 32445634 -111340821 - MIR3 SINE MIR -11 197 31 995 108 6 18 chr12 32446994 32447160 -111339295 - L1MB7 LINE L1 -8 6176 6013 818 199 139 18 chr12 32447706 32447759 -111338696 - MER33 DNA MER1_type -2272 313 268 2134 99 3 7 chr12 32447759 32448042 -111338413 - AluSc SINE Alu -16 293 12 818 199 139 18 chr12 32448042 32448057 -111338398 - MER33 DNA MER1_type -2317 268 256 219 36 0 0 chr12 32448057 32448085 -111338370 + (CAA)n Simple_repeat Simple_repeat 2 29 0 818 199 139 18 chr12 32448085 32448305 -111338150 - MER33 DNA MER1_type -2329 256 1 748 159 0 36 chr12 32448526 32448664 -111337791 - FLAM_A SINE Alu 0 133 1 381 353 160 12 chr12 32448971 32449430 -111337025 + L2 LINE L2 2565 3087 -185 1398 161 43 18 chr12 32449671 32449950 -111336505 - AluJb SINE Alu -26 286 1 2106 144 0 13 chr12 32450262 32450575 -111335880 - AluSx SINE Alu -3 309 1 534 179 0 0 chr12 32450832 32450927 -111335528 + L1MB5 LINE L1 6080 6174 0 207 0 0 0 chr12 32451252 32451275 -111335180 + (T)n Simple_repeat Simple_repeat 1 23 0 418 235 91 30 chr12 32451432 32451564 -111334891 + MLT1H LTR MaLR 101 240 -309 2088 106 0 11 chr12 32451582 32451864 -111334591 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 32451898 32451944 -111334511 + A-rich Low_complexity Low_complexity 1 46 0 1598 233 119 8 chr12 32452146 32452743 -111333712 + L1MD3 LINE L1 5343 6005 -1990 * 2087 173 69 12 chr12 32452403 32452911 -111333544 + L1MB8 LINE L1 5642 6178 0 1641 186 3 10 chr12 32452921 32453212 -111333243 + AluJb SINE Alu 1 289 -23 1612 144 18 0 chr12 32453808 32454085 -111332370 + L1MD3 LINE L1 7697 7978 -17 949 275 153 43 chr12 32454146 32454709 -111331746 - L2 LINE L2 0 3313 2690 2340 95 0 0 chr12 32454709 32455003 -111331452 + AluSg SINE Alu 1 294 -16 949 275 153 43 chr12 32455003 32455033 -111331422 - L2 LINE L2 -623 2690 2665 545 242 21 48 chr12 32455038 32455275 -111331180 + L1MC4 LINE L1 7363 7614 -207 1244 216 145 28 chr12 32455275 32455702 -111330753 - MLT1D LTR MaLR 0 505 29 1159 262 92 52 chr12 32455702 32456091 -111330364 - L2 LINE L2 -701 2613 2204 2283 93 6 6 chr12 32456091 32456403 -111330052 + AluSq SINE Alu 1 312 -1 1159 262 92 52 chr12 32456403 32456436 -111330019 - L2 LINE L2 -1110 2204 2174 891 114 76 0 chr12 32456765 32456896 -111329559 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 32456913 32456960 -111329495 + AT_rich Low_complexity Low_complexity 1 47 0 2391 86 0 0 chr12 32457303 32457605 -111328850 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 32457823 32457847 -111328608 + AT_rich Low_complexity Low_complexity 1 24 0 2261 99 13 0 chr12 32458405 32458708 -111327747 - AluSx SINE Alu -5 307 1 234 233 45 68 chr12 32459215 32459348 -111327107 - L2 LINE L2 -67 3246 3117 384 327 103 49 chr12 32459704 32460053 -111326402 - L2 LINE L2 -609 2705 2338 390 242 96 35 chr12 32460394 32460592 -111325863 - MER2 DNA MER2_type 0 345 136 1833 104 0 69 chr12 32461369 32461657 -111324798 - AluSx SINE Alu -9 303 36 1265 126 0 0 chr12 32462136 32462311 -111324144 + AluSg/x SINE Alu 131 305 -5 13414 134 40 34 chr12 32462509 32462618 -111323837 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 32462618 32462664 -111323791 + (CA)n Simple_repeat Simple_repeat 2 47 0 13414 134 40 34 chr12 32462664 32463054 -111323401 + L1MA3 LINE L1 1773 2159 -5565 2466 135 41 10 chr12 32463054 32463469 -111322986 + MSTA LTR MaLR 1 428 0 13414 134 40 34 chr12 32463469 32465791 -111320664 + L1MA3 LINE L1 2159 4466 -3258 2206 125 0 6 chr12 32465791 32466102 -111320353 + AluSx SINE Alu 1 309 -3 13414 134 40 34 chr12 32466102 32467577 -111318878 + L1MA3 LINE L1 4466 5931 -1793 1936 149 0 0 chr12 32467577 32467859 -111318596 + AluSx SINE Alu 1 282 -30 13414 134 40 34 chr12 32467859 32469212 -111317243 + L1MA3 LINE L1 5931 7372 -352 2380 90 0 7 chr12 32469212 32469512 -111316943 + AluSg SINE Alu 1 298 -12 13414 134 40 34 chr12 32469512 32469867 -111316588 + L1MA3 LINE L1 7372 7723 -1 1672 174 3 7 chr12 32469884 32470166 -111316289 + AluJb SINE Alu 5 285 -27 1105 151 0 49 chr12 32470235 32470420 -111316035 + AluJb SINE Alu 113 288 -24 2047 121 21 0 chr12 32471094 32471374 -111315081 + AluSx SINE Alu 1 286 -26 22 103 0 0 chr12 32471384 32471462 -111314993 + AT_rich Low_complexity Low_complexity 1 78 0 1869 162 0 10 chr12 32471496 32471792 -111314663 - AluJb SINE Alu -19 293 1 331 248 51 29 chr12 32471819 32471956 -111314499 + L1ME4a LINE L1 5093 5232 -914 393 236 60 51 chr12 32471959 32472234 -111314221 + L1MC5 LINE L1 7261 7498 -463 1588 136 31 8 chr12 32472441 32472699 -111313756 - L1PA16 LINE L1 -2 6164 5901 333 281 93 65 chr12 32472729 32472879 -111313576 + L1ME4a LINE L1 5751 5895 -226 1808 152 29 19 chr12 32472879 32473188 -111313267 + AluJb SINE Alu 1 312 0 333 281 93 65 chr12 32473188 32473361 -111313094 + L1ME4a LINE L1 5895 6083 -38 654 135 0 10 chr12 32473626 32473722 -111312733 + AluS SINE Alu 2 96 -217 2161 86 45 7 chr12 32473822 32474112 -111312343 + AluSq SINE Alu 1 301 -12 2555 58 0 0 chr12 32475153 32475447 -111311008 + AluY SINE Alu 1 294 -17 1201 263 76 40 chr12 32475447 32476029 -111310426 + MER41D-int LTR ERV1 7127 7729 -27 1130 157 0 0 chr12 32476034 32476206 -111310249 + AluSg/x SINE Alu 134 305 -7 2976 198 11 2 chr12 32476239 32476791 -111309664 + MER41D LTR ERV1 1 557 0 435 234 16 8 chr12 32477466 32477594 -111308861 - MIR SINE MIR 0 262 134 1011 106 0 0 chr12 32477605 32477737 -111308718 - FLAM_C SINE Alu -11 132 1 327 272 0 0 chr12 32477744 32477825 -111308630 - MIR SINE MIR -118 144 64 2326 91 0 26 chr12 32477989 32478155 -111308300 - AluSx SINE Alu -13 299 143 2301 111 0 0 chr12 32478155 32478461 -111307994 - AluSx SINE Alu -4 308 3 2326 91 0 26 chr12 32478461 32478601 -111307854 - AluSx SINE Alu -169 143 1 1933 153 3 3 chr12 32478753 32479054 -111307401 - AluJb SINE Alu -11 301 1 1109 102 0 7 chr12 32479327 32479474 -111306981 - AluSq/x SINE Alu -164 148 3 566 226 9 0 chr12 32479476 32479591 -111306864 - MLT2B2 LTR ERVL -399 116 1 1576 146 3 93 chr12 32479786 32480107 -111306348 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 32480107 32480131 -111306324 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 32480175 32480411 -111306044 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 32481036 32481351 -111305104 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 32481351 32481573 -111304882 - AluJb SINE Alu -5 307 85 632 171 23 54 chr12 32481573 32481702 -111304753 - AluJo SINE Alu -177 135 11 546 271 33 17 chr12 32482113 32482294 -111304161 + MIR SINE MIR 14 197 -65 2158 105 0 7 chr12 32482306 32482601 -111303854 + AluSx SINE Alu 20 312 0 2001 157 6 14 chr12 32482602 32482947 -111303508 + L1MB8 LINE L1 5488 5829 -355 756 171 171 0 chr12 32482947 32483099 -111303356 + MER2 DNA MER2_type 1 178 -167 2303 93 0 35 chr12 32483101 32483294 -111303161 - AluSg SINE Alu -11 299 120 2500 68 7 0 chr12 32483294 32483601 -111302854 - AluY SINE Alu -2 309 1 2303 93 0 35 chr12 32483601 32483717 -111302738 - AluSg SINE Alu -190 120 1 1103 105 149 6 chr12 32483727 32483908 -111302547 - AluSg/x SINE Alu -21 289 83 848 126 86 26 chr12 32483908 32484059 -111302396 + MER2 DNA MER2_type 186 345 0 418 151 116 0 chr12 32484059 32484145 -111302310 + L1MB8 LINE L1 5828 5923 -255 1387 125 37 148 chr12 32484145 32484496 -111301959 + Tigger1 DNA MER2_type 1 312 -2106 1992 146 44 0 chr12 32484496 32484791 -111301664 - AluSx SINE Alu -4 308 1 3625 109 45 6 chr12 32484795 32485328 -111301127 + MER41A LTR ERV1 1 554 0 434 242 23 45 chr12 32485332 32485464 -111300991 - L2 LINE L2 -570 2744 2616 542 231 30 59 chr12 32485465 32485571 -111300884 + MER34 LTR ERV1 1 102 -440 2425 135 94 2 chr12 32485571 32485985 -111300470 - LTR47A LTR ERVL 0 452 1 542 231 30 59 chr12 32485985 32486047 -111300408 + MER34 LTR ERV1 102 164 -378 2270 77 0 68 chr12 32486047 32486371 -111300084 - AluSx SINE Alu -10 302 1 4179 123 3 10 chr12 32486498 32487114 -111299341 + LTR9 LTR ERV1 1 612 0 746 231 57 57 chr12 32487122 32487403 -111299052 + MER34 LTR ERV1 257 537 -5 434 242 97 0 chr12 32487407 32487531 -111298924 - L2 LINE L2 -696 2618 2483 2206 100 3 3 chr12 32487666 32487966 -111298489 + AluSx SINE Alu 1 300 -12 2328 107 0 0 chr12 32488405 32488713 -111297742 + AluSx SINE Alu 1 308 -4 260 224 0 0 chr12 32488778 32488827 -111297628 + L1MA10 LINE L1 6199 6247 -87 1182 186 71 108 chr12 32488827 32489236 -111297219 + LTR34 LTR ERV1 1 394 -305 945 160 11 17 chr12 32490863 32491038 -111295417 + FAM SINE Alu 1 174 -1 1764 154 7 18 chr12 32491038 32491368 -111295087 + AluJb SINE Alu 6 332 0 2180 122 10 0 chr12 32491381 32491684 -111294771 + AluSx SINE Alu 1 306 -6 1664 147 19 51 chr12 32492748 32493062 -111293393 + AluSx SINE Alu 1 304 -8 861 207 6 6 chr12 32493067 32493241 -111293214 + AluJb SINE Alu 138 311 -1 1951 125 3 20 chr12 32493244 32493539 -111292916 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 32493550 32493608 -111292847 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1722 152 10 62 chr12 32493676 32493985 -111292470 + AluJo SINE Alu 1 293 -19 24 67 0 0 chr12 32494453 32494498 -111291957 + AT_rich Low_complexity Low_complexity 1 45 0 2598 56 0 3 chr12 32494503 32494807 -111291648 + AluY SINE Alu 1 303 -8 1873 166 0 10 chr12 32494912 32495220 -111291235 + AluJb SINE Alu 1 305 -7 284 234 211 0 chr12 32495869 32495997 -111290458 + MIR SINE MIR 32 186 -76 1887 145 16 7 chr12 32496448 32496707 -111289748 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 32496707 32496734 -111289721 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1887 145 16 7 chr12 32496734 32496778 -111289677 + AluSx SINE Alu 265 307 -5 346 185 11 11 chr12 32496778 32496870 -111289585 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 32497027 32497058 -111289397 + AT_rich Low_complexity Low_complexity 1 31 0 586 147 0 20 chr12 32497549 32497651 -111288804 - AluJb SINE Alu 0 312 213 1273 189 5 0 chr12 32497784 32498006 -111288449 + AluJb SINE Alu 85 307 -5 1885 153 0 0 chr12 32498006 32498321 -111288134 + AluSx SINE Alu 1 315 0 442 238 79 38 chr12 32498946 32499182 -111287273 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 32499226 32499250 -111287205 + (A)n Simple_repeat Simple_repeat 1 24 0 1506 146 3 99 chr12 32499250 32499573 -111286882 + AluJb SINE Alu 1 292 -20 566 226 9 0 chr12 32499768 32499883 -111286572 + MLT2B1 LTR ERVL 1 116 -404 1109 102 0 7 chr12 32499885 32500032 -111286423 + AluSq/x SINE Alu 3 148 -165 1933 153 3 3 chr12 32500305 32500606 -111285849 + AluJb SINE Alu 1 301 -11 1062 88 0 22 chr12 32500758 32500895 -111285560 + AluSq/x SINE Alu 1 134 -178 1926 143 0 22 chr12 32500897 32501211 -111285244 + AluSx SINE Alu 3 309 -3 642 138 51 174 chr12 32501230 32501426 -111285029 - LTR54 LTR ERV1 -193 317 146 3076 145 32 0 chr12 32501511 32502007 -111284448 + MER41E LTR ERV1 1 512 0 751 163 28 14 chr12 32502011 32502152 -111284303 - LTR54 LTR ERV1 -367 143 1 474 64 167 0 chr12 32502298 32502376 -111284079 - MER21A LTR ERV1 -27 904 814 800 164 21 14 chr12 32502405 32502545 -111283910 + AluJb SINE Alu 149 289 -23 1308 165 91 8 chr12 32502601 32502844 -111283611 - MER21B LTR ERV1 -138 725 463 884 145 8 0 chr12 32502845 32502976 -111283479 + AluSg/x SINE Alu 148 279 -33 192 77 0 0 chr12 32502976 32503002 -111283453 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2257 99 0 0 chr12 32503003 32503287 -111283168 + AluSc SINE Alu 1 284 -25 2531 162 73 7 chr12 32503294 32503733 -111282722 - MER21B LTR ERV1 -395 468 1 180 0 0 0 chr12 32505256 32505276 -111281179 + (T)n Simple_repeat Simple_repeat 1 20 0 330 269 11 11 chr12 32507166 32507259 -111279196 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 32507276 32507449 -111279006 + CT-rich Low_complexity Low_complexity 2 178 0 1453 142 14 142 chr12 32507461 32507688 -111278767 - AluJo SINE Alu -1 301 131 2496 87 0 0 chr12 32507688 32507999 -111278456 - AluY SINE Alu 0 311 1 1453 142 14 142 chr12 32507999 32508115 -111278340 - AluJo SINE Alu -171 131 2 629 217 103 53 chr12 32508432 32508679 -111277776 + MLT1H1 LTR MaLR 42 281 -261 716 144 72 50 chr12 32509178 32509317 -111277138 - FLAM_C SINE Alu 0 143 2 2243 123 0 0 chr12 32509495 32509795 -111276660 - AluSx SINE Alu -12 300 1 35 24 0 0 chr12 32509804 32509846 -111276609 + AT_rich Low_complexity Low_complexity 1 42 0 2258 87 0 16 chr12 32509846 32510156 -111276299 - AluY SINE Alu -6 305 1 2116 136 3 7 chr12 32510158 32510467 -111275988 - AluSx SINE Alu 0 312 5 360 191 11 157 chr12 32510477 32510655 -111275800 + L1MC5 LINE L1 7765 7916 -45 726 186 0 0 chr12 32511462 32511586 -111274869 - AluJ SINE Alu -1 311 188 1312 33 0 0 chr12 32511623 32511774 -111274681 - L1PA3 LINE L1 -3 6152 6002 2511 76 6 3 chr12 32511777 32512319 -111274136 - LTR10E LTR ERV1 -12 621 1 1197 176 0 0 chr12 32512321 32512509 -111273946 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 32512569 32512604 -111273851 + AT_rich Low_complexity Low_complexity 1 35 0 617 190 17 0 chr12 32512604 32512720 -111273735 - FLAM_C SINE Alu -11 122 5 2284 181 36 5 chr12 32512905 32513326 -111273129 - Tigger2a DNA MER2_type 0 434 1 2423 92 0 16 chr12 32513355 32513670 -111272785 - AluSq SINE Alu -3 310 1 697 152 9 0 chr12 32513670 32513782 -111272673 - FLAM_A SINE Alu -12 130 18 580 176 0 64 chr12 32513822 32513947 -111272508 + FLAM_C SINE Alu 13 129 -14 401 133 0 16 chr12 32513981 32514221 -111272234 + AluSx SINE Alu 1 310 0 539 144 63 0 chr12 32514251 32514362 -111272093 + L1MA8 LINE L1 6174 6291 0 2071 167 25 11 chr12 32515383 32515743 -111270712 + MLT1A1 LTR MaLR 1 365 0 1431 217 65 0 chr12 32515878 32515995 -111270460 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 32515995 32516030 -111270425 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1431 217 65 0 chr12 32516030 32516202 -111270253 + AluJb SINE Alu 109 309 -3 1222 134 0 0 chr12 32516225 32516397 -111270058 + AluSg/x SINE Alu 138 309 -1 949 181 6 17 chr12 32516674 32516851 -111269604 - AluJ SINE Alu -5 307 133 240 179 128 39 chr12 32516928 32517006 -111269449 + L2 LINE L2 3229 3313 0 2218 131 0 6 chr12 32517321 32517633 -111268822 - AluSx SINE Alu -2 310 1 39 0 0 0 chr12 32517754 32517793 -111268662 + AT_rich Low_complexity Low_complexity 1 39 0 734 176 48 0 chr12 32517794 32517919 -111268536 - AluJ SINE Alu -181 131 1 344 265 93 12 chr12 32517931 32518093 -111268362 - L1MC/D LINE L1 -2048 5760 5586 2395 84 0 7 chr12 32518210 32518509 -111267946 + AluSg SINE Alu 1 297 -13 704 90 10 0 chr12 32518612 32518712 -111267743 + AluY SINE Alu 2 102 -209 1996 120 3 10 chr12 32518835 32519134 -111267321 + AluSg SINE Alu 1 297 -13 2186 88 0 41 chr12 32519236 32519553 -111266902 + AluY SINE Alu 1 304 -7 2530 69 0 0 chr12 32519607 32519910 -111266545 - AluY SINE Alu -8 303 1 637 297 87 45 chr12 32519992 32520349 -111266106 - MLT1K LTR MaLR -18 570 199 2285 118 3 0 chr12 32520847 32521153 -111265302 - AluSx SINE Alu -5 307 1 854 138 0 0 chr12 32521294 32521410 -111265045 + FLAM_C SINE Alu 2 117 -26 365 0 22 0 chr12 32521418 32521463 -111264992 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1933 205 19 51 chr12 32521784 32522258 -111264197 - MLT1C LTR MaLR -3 464 6 2113 114 3 3 chr12 32522353 32522643 -111263812 - AluSx SINE Alu -18 294 5 1096 182 43 66 chr12 32523009 32523147 -111263308 + AluJo SINE Alu 1 132 -180 1772 155 24 7 chr12 32523147 32523451 -111263004 + AluJb SINE Alu 1 302 -10 1096 182 43 66 chr12 32523451 32523570 -111262885 + AluJo SINE Alu 132 252 -60 339 99 28 42 chr12 32523966 32524037 -111262418 + AluSp/q SINE Alu 233 302 -1 614 299 116 9 chr12 32524087 32524311 -111262144 - MIR SINE MIR 0 262 15 360 64 0 0 chr12 32524539 32524586 -111261869 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 851 197 0 0 chr12 32524586 32524733 -111261722 - AluJb SINE Alu -32 280 134 1629 226 53 27 chr12 32524733 32524768 -111261687 - L1ME1 LINE L1 -11 6155 6122 2326 84 0 0 chr12 32524768 32525064 -111261391 + AluSx SINE Alu 1 296 -16 1629 226 53 27 chr12 32525064 32525440 -111261015 - L1ME1 LINE L1 -44 6122 5733 306 188 50 40 chr12 32525445 32525546 -111260909 - LTR41 LTR ERVL -16 757 656 1520 143 0 19 chr12 32525546 32525804 -111260651 + AluJb SINE Alu 11 263 -49 605 125 0 80 chr12 32526827 32526916 -111259539 + U5 snRNA snRNA 1 81 -35 2149 107 3 0 chr12 32526916 32527216 -111259239 - AluSq SINE Alu -12 301 1 605 125 0 80 chr12 32527216 32527238 -111259217 + U5 snRNA snRNA 81 103 -13 2052 110 16 13 chr12 32527268 32527578 -111258877 - AluSx SINE Alu -1 311 1 182 331 71 55 chr12 32527670 32527797 -111258658 - L2 LINE L2 -5 3267 3139 2138 92 10 7 chr12 32527902 32528206 -111258249 - AluSc SINE Alu -4 305 1 21 57 0 0 chr12 32528214 32528249 -111258206 + AT_rich Low_complexity Low_complexity 1 35 0 347 56 19 74 chr12 32528249 32528303 -111258152 - AluSg/x SINE Alu -169 131 85 1011 206 18 14 chr12 32528304 32528523 -111257932 - AluJo SINE Alu -92 220 1 732 134 24 31 chr12 32528793 32528920 -111257535 + FLAM_C SINE Alu 2 127 -16 648 161 0 66 chr12 32528942 32529079 -111257376 - FLAM_C SINE Alu -5 128 1 28 29 0 0 chr12 32529824 32529859 -111256596 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32529962 32530025 -111256430 + GC_rich Low_complexity Low_complexity 1 63 0 25 0 0 0 chr12 32530160 32530185 -111256270 + GC_rich Low_complexity Low_complexity 1 25 0 2523 223 98 42 chr12 32532173 32532307 -111254148 - L2 LINE L2 -2 3311 3186 1596 173 48 21 chr12 32532307 32532642 -111253813 + MER2 DNA MER2_type 1 344 0 2523 223 98 42 chr12 32532642 32533190 -111253265 - L2 LINE L2 -127 3186 2670 2058 106 10 7 chr12 32533190 32533482 -111252973 + AluSx SINE Alu 1 293 -19 2523 223 98 42 chr12 32533482 32534017 -111252438 - L2 LINE L2 -643 2670 2022 26 50 0 0 chr12 32534480 32534520 -111251935 + AT_rich Low_complexity Low_complexity 1 40 0 1913 137 60 117 chr12 32535803 32536185 -111250270 + MSTB1 LTR MaLR 6 360 -72 1514 150 17 51 chr12 32536185 32536478 -111249977 - AluJo SINE Alu -29 283 1 1913 137 60 117 chr12 32536478 32536548 -111249907 + MSTB1 LTR MaLR 360 432 0 254 247 0 56 chr12 32536718 32536807 -111249648 + GA-rich Low_complexity Low_complexity 6 89 0 357 227 42 214 chr12 32537232 32537304 -111249151 - MIR SINE MIR -3 259 176 2024 129 0 3 chr12 32537304 32537613 -111248842 - AluSx SINE Alu -4 308 1 357 227 42 214 chr12 32537613 32537698 -111248757 - MIR SINE MIR -86 176 179 2171 101 0 0 chr12 32537698 32537996 -111248459 - AluSg SINE Alu -12 298 1 357 227 42 214 chr12 32537996 32538150 -111248305 - MIR SINE MIR -82 180 1 180 221 255 90 chr12 32538612 32538757 -111247698 + MIR3 SINE MIR 1 169 -39 1372 210 76 34 chr12 32538871 32539199 -111247256 - MER2 DNA MER2_type -1 343 2 2067 93 20 13 chr12 32539295 32539596 -111246859 - AluSp SINE Alu -10 303 1 1661 145 28 25 chr12 32539903 32540185 -111246270 - AluJb SINE Alu -29 283 1 336 192 40 50 chr12 32540214 32540313 -111246142 + AluY SINE Alu 1 98 -210 854 97 0 0 chr12 32540604 32540717 -111245738 + AluSg/x SINE Alu 180 292 -18 2389 24 41 0 chr12 32541178 32541469 -111244986 - AluY SINE Alu -8 303 1 534 309 166 23 chr12 32541782 32542167 -111244288 - L1ME4a LINE L1 -61 6060 5621 2246 101 0 0 chr12 32542170 32542467 -111243988 + AluSx SINE Alu 1 297 -15 566 189 186 21 chr12 32542475 32542745 -111243710 + MLT1G LTR MaLR 1 306 -284 233 295 39 0 chr12 32542844 32542922 -111243533 + MLT1G LTR MaLR 411 491 -58 1512 207 8 4 chr12 32542924 32543190 -111243265 + Tigger4(Zombi) DNA MER2_type 2 268 -2463 1084 113 74 109 chr12 32543192 32543233 -111243222 + Tigger4(Zombi) DNA MER2_type 2510 2551 -180 1305 230 0 63 chr12 32543233 32543385 -111243070 + AluJb SINE Alu 1 124 -178 1817 168 3 0 chr12 32543385 32543689 -111242766 + AluSx SINE Alu 1 305 -7 1305 230 0 63 chr12 32543689 32543854 -111242601 + AluJb SINE Alu 124 298 -4 1084 113 74 109 chr12 32543854 32544042 -111242413 + Tigger4(Zombi) DNA MER2_type 2551 2731 0 2006 123 0 7 chr12 32544444 32544745 -111241710 + AluSx SINE Alu 1 299 -13 825 184 53 0 chr12 32544759 32544911 -111241544 + FRAM SINE Alu 4 163 -13 2266 95 0 0 chr12 32544975 32545271 -111241184 - AluSq SINE Alu -17 296 1 2148 114 0 0 chr12 32545417 32545725 -111240730 + AluSx SINE Alu 1 308 -4 1260 96 0 0 chr12 32545725 32545891 -111240564 + AluSg/x SINE Alu 132 297 -13 365 271 20 6 chr12 32546038 32546138 -111240317 + MIR SINE MIR 52 147 -61 956 106 0 0 chr12 32546143 32546275 -111240180 + FLAM_C SINE Alu 1 132 -11 492 234 16 8 chr12 32546286 32546414 -111240041 + MIR SINE MIR 134 262 0 917 187 81 135 chr12 32547189 32547537 -111238918 - LTR34 LTR ERV1 -370 329 1 430 221 0 1 chr12 32547569 32547653 -111238802 - L1ME4a LINE L1 -599 5567 5486 2005 98 0 54 chr12 32547653 32547970 -111238485 - AluSc SINE Alu -9 300 1 380 319 36 0 chr12 32548000 32548138 -111238317 + PRIMA41-int LTR ERV1 6321 6463 -1293 2161 94 3 0 chr12 32548747 32549034 -111237421 + AluSx SINE Alu 1 288 -24 1016 99 81 0 chr12 32550699 32550860 -111235595 - AluSp SINE Alu -12 301 128 28 29 0 0 chr12 32550959 32550994 -111235461 + GC_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr12 32551114 32551149 -111235306 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32551212 32551275 -111235180 + GC_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr12 32551348 32551372 -111235083 + GC_rich Low_complexity Low_complexity 1 24 0 2471 197 84 14 chr12 32601510 32602736 -111183719 - L1PBa LINE L1 -5069 1794 303 2372 102 0 0 chr12 32602736 32603039 -111183416 - AluSg SINE Alu -7 303 1 2471 197 84 14 chr12 32603039 32603244 -111183211 - L1PBa LINE L1 -6560 303 114 21 0 0 0 chr12 32603304 32603325 -111183130 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 32603385 32603420 -111183035 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 32604281 32604386 -111182069 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 32606120 32606543 -111179912 + Tigger2a DNA MER2_type 1 434 0 390 91 0 0 chr12 32606817 32606872 -111179583 + (CA)n Simple_repeat Simple_repeat 1 55 0 251 97 48 16 chr12 32606966 32607028 -111179427 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 32607765 32607876 -111178579 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 32609239 32609342 -111177113 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 32609685 32609738 -111176717 + (TA)n Simple_repeat Simple_repeat 1 53 0 990 238 30 5 chr12 32609830 32610076 -111176379 - MIR SINE MIR 0 262 14 395 325 57 64 chr12 32610195 32610460 -111175995 + L3 LINE CR1 1216 1478 -99 2025 126 0 68 chr12 32610525 32610851 -111175604 - AluSx SINE Alu -7 305 2 4642 153 24 51 chr12 32610921 32610975 -111175480 + L1MB3 LINE L1 5056 5110 -1073 6303 89 8 2 chr12 32610975 32611947 -111174508 + L1PA13 LINE L1 5168 6146 -17 4642 153 24 51 chr12 32611947 32613051 -111173404 + L1MB3 LINE L1 5110 6182 -1 1906 180 0 0 chr12 32613644 32613938 -111172517 - AluJb SINE Alu -18 294 1 898 201 100 80 chr12 32614419 32614768 -111171687 + MER76 LTR ERV 331 686 -2 10298 174 96 15 chr12 32614792 32617462 -111168993 + L1M4c LINE L1 19 2909 -3473 2573 176 16 26 chr12 32617463 32618071 -111168384 + pTR5 LTR ERV1 743 1344 -1094 4264 123 15 126 chr12 32618087 32619009 -111167446 + LTR12 LTR ERV1 5 824 -2 636 266 76 11 chr12 32619013 32619288 -111167167 + L1M4c LINE L1 2914 3206 -3176 284 169 56 14 chr12 32619506 32619577 -111166878 + L1M4c LINE L1 3207 3280 -3102 * 1579 223 14 7 chr12 32619570 32619997 -111166458 + L1M4c LINE L1 3525 3954 -2428 376 168 9 97 chr12 32620409 32620522 -111165933 - MER53 DNA DNA -82 107 5 1645 233 45 31 chr12 32621352 32621841 -111164614 + L2 LINE L2 1557 2052 -1262 381 262 62 111 chr12 32621938 32622342 -111164113 - MLT1H LTR MaLR -165 384 1 614 176 17 25 chr12 32622401 32622520 -111163935 - FLAM_A SINE Alu -12 121 4 2597 263 100 17 chr12 32622532 32623591 -111162864 + L2 LINE L2 2074 3220 -93 231 277 75 75 chr12 32623686 32623968 -111162487 - MLT1J LTR MaLR 0 511 230 1935 126 3 11 chr12 32624262 32624548 -111161907 + AluSq SINE Alu 1 284 -29 984 219 44 133 chr12 32624947 32625467 -111160988 + L1MC4 LINE L1 7138 7611 -431 1247 199 25 21 chr12 32625467 32625708 -111160747 + Charlie1a DNA MER1_type 1 242 -1213 1662 157 44 7 chr12 32625728 32626022 -111160433 - L1MA3 LINE L1 0 6305 6001 252 62 21 62 chr12 32626259 32626307 -111160148 + AluSc SINE Alu 254 299 0 744 240 20 0 chr12 32626315 32626465 -111159990 + MER58B DNA MER1_type 189 341 0 1640 172 35 14 chr12 32626542 32626832 -111159623 - AluJb SINE Alu -16 296 1 232 263 32 63 chr12 32628795 32628890 -111157565 + MIR SINE MIR 164 255 -7 3008 214 34 20 chr12 32628901 32629583 -111156872 - Charlie1 DNA MER1_type -473 2288 1598 354 259 62 0 chr12 32629554 32629635 -111156820 - Charlie1 DNA MER1_type -2664 97 12 * 997 105 20 0 chr12 32629636 32629788 -111156667 + L1MA2 LINE L1 5869 6023 -281 194 129 0 0 chr12 32629811 32629842 -111156613 + (C)n Simple_repeat Simple_repeat 1 31 0 1558 143 49 52 chr12 32630191 32630498 -111155957 - AluSx SINE Alu -6 306 1 2280 89 0 13 chr12 32630526 32630830 -111155625 + AluY SINE Alu 1 300 -11 2377 96 0 0 chr12 32630897 32631200 -111155255 + AluSq SINE Alu 1 303 -10 2254 103 13 0 chr12 32631939 32632239 -111154216 + AluSq SINE Alu 1 304 -9 209 326 11 43 chr12 32632853 32632907 -111153548 - MIR3 SINE MIR -2 206 155 604 233 85 28 chr12 32632907 32633083 -111153372 - MER5A DNA MER1_type 0 189 4 209 326 11 43 chr12 32633083 32633120 -111153335 - MIR3 SINE MIR -53 155 118 2980 128 7 30 chr12 32633120 32633556 -111152899 - MSTB LTR MaLR 0 426 1 2982 106 86 0 chr12 32633570 32633953 -111152502 + MLT2A2 LTR ERVL 1 424 -29 894 81 0 0 chr12 32633953 32634077 -111152378 + (TA)n Simple_repeat Simple_repeat 2 125 0 2982 106 86 0 chr12 32634077 32634110 -111152345 + MLT2A2 LTR ERVL 424 453 0 452 230 81 72 chr12 32634195 32634417 -111152038 + L2 LINE L2 2905 3128 -185 1004 226 149 29 chr12 32634619 32634928 -111151527 - L2 LINE L2 0 3313 3042 3000 191 2 6 chr12 32634928 32635416 -111151039 + MER66B LTR ERV1 1 486 0 1004 226 149 29 chr12 32635416 32635681 -111150774 - L2 LINE L2 -271 3042 2668 4559 167 29 14 chr12 32635764 32636628 -111149827 + L1MB4 LINE L1 5304 6180 0 252 188 0 0 chr12 32636672 32636720 -111149735 - L2 LINE L2 -5 3308 3261 190 277 36 48 chr12 32637879 32637962 -111148493 + MIR SINE MIR 28 109 -153 438 238 229 51 chr12 32637982 32638196 -111148259 + MIR SINE MIR 8 259 -3 2104 178 5 56 chr12 32638538 32638949 -111147506 + MLT1B LTR MaLR 1 390 0 184 302 50 126 chr12 32639023 32639215 -111147240 - L2 LINE L2 -4 3268 3116 2667 89 100 8 chr12 32639215 32639606 -111146849 + MSTA LTR MaLR 2 428 0 184 302 50 126 chr12 32639606 32639777 -111146678 - L2 LINE L2 -156 3116 2933 218 306 14 14 chr12 32640070 32640142 -111146313 - MIR SINE MIR -32 230 159 303 268 21 10 chr12 32640337 32640434 -111146021 - MLT1J1 LTR MaLR -295 151 54 294 361 56 0 chr12 32640489 32640597 -111145858 - MIR SINE MIR -147 115 2 2280 105 3 0 chr12 32640631 32640936 -111145519 + AluSp SINE Alu 1 306 -7 506 335 74 54 chr12 32640961 32641268 -111145187 - L2 LINE L2 -584 2730 2408 1817 154 30 13 chr12 32641268 32641573 -111144882 + AluJb SINE Alu 1 310 -2 506 335 74 54 chr12 32641573 32641781 -111144674 - L2 LINE L2 -906 2408 2205 237 261 127 61 chr12 32641785 32641950 -111144505 - L2 LINE L2 -1274 2040 1865 4481 164 28 19 chr12 32642044 32642823 -111143632 + MER21B LTR ERV1 1 786 -77 952 310 61 22 chr12 32642959 32643366 -111143089 - LTR16A LTR ERVL -10 440 18 714 264 62 0 chr12 32643381 32643574 -111142881 + MIR SINE MIR 43 247 -15 198 184 41 41 chr12 32643599 32643648 -111142807 - MIR3 SINE MIR -153 55 7 225 295 26 13 chr12 32644276 32644354 -111142101 + MIR SINE MIR 72 150 -112 45302 38 1 1 chr12 32645200 32651358 -111135097 + L1PA4 LINE L1 1 6152 -3 27 0 0 0 chr12 32651358 32651385 -111135070 + AT_rich Low_complexity Low_complexity 1 27 0 2305 158 29 75 chr12 32651462 32651943 -111134512 - MLT1C LTR MaLR -8 459 1 552 194 15 8 chr12 32651946 32652080 -111134375 + L1ME2 LINE L1 5067 5201 -945 2603 190 105 70 chr12 32652456 32653362 -111133093 + L1ME2 LINE L1 5188 6161 -3 2627 151 46 12 chr12 32654430 32654842 -111131613 - MSTA LTR MaLR 0 428 3 2783 88 11 0 chr12 32655228 32655579 -111130876 + THE1A LTR MaLR 1 355 0 717 180 90 66 chr12 32657085 32657329 -111129126 + L1M4c LINE L1 1279 1528 -4856 15904 157 13 18 chr12 32657332 32659315 -111127140 + L1PA16 LINE L1 2 1973 -4876 2344 122 0 0 chr12 32659315 32659627 -111126828 + AluSx SINE Alu 1 312 0 15904 157 13 18 chr12 32659627 32660219 -111126236 + L1PA16 LINE L1 1973 2566 -4283 2143 207 47 2 chr12 32660197 32660689 -111125766 + L1PA16 LINE L1 5378 5891 -958 * 8219 114 21 16 chr12 32660696 32661936 -111124519 + L1PA7 LINE L1 5 1250 -5211 20494 87 2 1 chr12 32661938 32665402 -111121053 + L1PA7 LINE L1 2966 6453 -16 3874 128 40 11 chr12 32665440 32666136 -111120319 + L1PA16 LINE L1 5875 6585 -284 6521 95 10 22 chr12 32666136 32667206 -111119249 + L1PA13 LINE L1 5100 6158 -5 2502 61 0 10 chr12 32667208 32667518 -111118937 + AluY SINE Alu 1 307 -4 309 296 60 25 chr12 32667527 32667717 -111118738 - L1ME LINE L1 -456 5714 5514 430 299 32 36 chr12 32667818 32668096 -111118359 + HAL1b LINE L1 661 937 -411 2282 110 0 0 chr12 32668232 32668531 -111117924 - AluSc SINE Alu -10 299 1 1093 172 0 0 chr12 32668566 32668740 -111117715 + AluJb SINE Alu 137 310 -2 356 216 0 0 chr12 32668753 32668841 -111117614 + GA-rich Low_complexity Low_complexity 3 90 0 1391 101 31 35 chr12 32669065 32669293 -111117162 + L1MA10 LINE L1 6101 6327 -7 380 351 56 38 chr12 32669296 32669689 -111116766 + L1M4 LINE L1 2235 2634 -3512 234 215 38 25 chr12 32670403 32670482 -111115973 + L1M4 LINE L1 1042 1121 -5421 930 196 0 6 chr12 32670499 32670657 -111115798 + FRAM SINE Alu 1 152 -24 5387 76 46 7 chr12 32671267 32671989 -111114466 - L1PA11 LINE L1 0 6174 5425 23 0 0 0 chr12 32672607 32672630 -111113825 + AT_rich Low_complexity Low_complexity 1 23 0 1844 45 0 18 chr12 32673534 32673754 -111112701 + AluY SINE Alu 86 301 -10 1892 146 3 13 chr12 32675648 32675949 -111110506 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 32676089 32676384 -111110071 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 32676387 32676778 -111109677 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 32677221 32677530 -111108925 - AluY SINE Alu 0 311 1 769 287 116 37 chr12 32678337 32678500 -111107955 + MLT1H LTR MaLR 1 150 -399 2124 118 14 3 chr12 32678500 32678797 -111107658 + AluJb SINE Alu 1 300 -12 769 287 116 37 chr12 32678797 32679142 -111107313 + MLT1H LTR MaLR 150 549 0 1328 262 136 16 chr12 32679388 32679872 -111106583 - MLT1F LTR MaLR 0 542 1 443 255 43 35 chr12 32679938 32680079 -111106376 - LTR67 LTR ERVL -4 553 412 2055 191 30 74 chr12 32680458 32680986 -111105469 - MLT1D LTR MaLR 0 505 1 4654 226 79 15 chr12 32681675 32683461 -111102994 + L1M1 LINE L1 3026 4943 -2622 1373 211 4 7 chr12 32683578 32683848 -111102607 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 32684221 32684493 -111101962 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 32684561 32684652 -111101803 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 32684651 32685473 -111100982 + Tigger3b DNA MER2_type 279 1207 -24 23 0 0 0 chr12 32686699 32686722 -111099733 + AT_rich Low_complexity Low_complexity 1 23 0 255 255 106 35 chr12 32690090 32690231 -111096224 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 32690244 32690283 -111096172 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 32691247 32691268 -111095187 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 32691295 32691327 -111095128 + AT_rich Low_complexity Low_complexity 1 32 0 3074 159 73 6 chr12 32691644 32692064 -111094391 + L1MA7 LINE L1 5620 6097 -194 225 0 0 0 chr12 32692064 32692089 -111094366 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3074 159 73 6 chr12 32692089 32692298 -111094157 + L1MA7 LINE L1 6097 6291 0 216 0 0 0 chr12 32692856 32692880 -111093575 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2350 58 0 17 chr12 32695522 32695815 -111090640 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 32696111 32696140 -111090315 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 32697594 32697821 -111088634 + L1MA5A LINE L1 6038 6275 -22 493 261 188 23 chr12 32697966 32698311 -111088144 + L1MC4a LINE L1 5756 6157 -1651 435 103 0 0 chr12 32698334 32698402 -111088053 - Alu SINE Alu 0 311 244 311 254 121 118 chr12 32698410 32698756 -111087699 + L1MC4a LINE L1 6235 6581 -1227 2198 100 0 23 chr12 32698757 32699066 -111087389 + AluSq SINE Alu 1 302 -11 1037 199 5 0 chr12 32699089 32699285 -111087170 + L1PA16 LINE L1 5954 6150 -16 227 129 29 29 chr12 32699472 32699542 -111086913 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 198 172 104 chr12 32699544 32700026 -111086429 + L1MC5 LINE L1 6671 7173 -788 256 119 24 24 chr12 32700091 32700133 -111086322 + AluSc SINE Alu 219 260 -39 249 183 33 17 chr12 32700134 32700194 -111086261 + L1MC5 LINE L1 7308 7368 -593 1608 170 26 42 chr12 32700312 32700662 -111085793 + MSTB2 LTR MaLR 1 282 -114 1440 206 10 21 chr12 32700938 32701229 -111085226 + AluJo SINE Alu 9 296 -16 545 174 181 7 chr12 32701328 32701466 -111084989 + L1M4b LINE L1 791 952 -5907 2259 106 6 10 chr12 32701485 32701797 -111084658 - AluSx SINE Alu -1 311 1 203 268 134 24 chr12 32702027 32702109 -111084346 + L2 LINE L2 3150 3240 -32 24 77 0 0 chr12 32702156 32702208 -111084247 + AT_rich Low_complexity Low_complexity 1 52 0 485 205 162 52 chr12 32702784 32703111 -111083344 + HAL1 LINE L1 1081 1443 -1064 1468 162 156 3 chr12 32703174 32703476 -111082979 - MER7A DNA MER2_type 0 346 1 486 330 23 6 chr12 32704333 32704506 -111081949 - MIR3 SINE MIR -8 200 25 2166 98 14 3 chr12 32705983 32706278 -111080177 - AluSq SINE Alu -15 298 1 906 244 129 52 chr12 32707788 32708153 -111078302 - L2 LINE L2 -11 3302 2910 614 259 129 10 chr12 32708437 32708630 -111077825 - MIR SINE MIR -27 235 20 819 185 46 0 chr12 32709143 32709294 -111077161 + AluJo SINE Alu 48 205 -107 189 0 0 0 chr12 32709301 32709322 -111077133 + (GA)n Simple_repeat Simple_repeat 2 22 0 1265 182 112 15 chr12 32710751 32711020 -111075435 + AluJo SINE Alu 1 295 -17 286 279 0 0 chr12 32712486 32712554 -111073901 - L3 LINE CR1 -175 1402 1335 2517 45 0 7 chr12 32712633 32712942 -111073513 + AluY SINE Alu 1 307 -4 338 308 62 51 chr12 32713037 32713232 -111073223 + L1M4 LINE L1 4883 5079 -1067 24 77 0 0 chr12 32713270 32713322 -111073133 + AT_rich Low_complexity Low_complexity 1 52 0 2152 122 0 7 chr12 32714216 32714510 -111071945 + AluSx SINE Alu 1 292 -20 23 68 0 0 chr12 32714599 32714643 -111071812 + AT_rich Low_complexity Low_complexity 1 44 0 399 233 103 0 chr12 32716271 32716387 -111070068 + L1ME2 LINE L1 6027 6154 -10 2346 73 0 52 chr12 32716787 32717115 -111069340 + AluY SINE Alu 1 311 0 1189 193 134 30 chr12 32717198 32717467 -111068988 - AluJo SINE Alu -5 297 1 28 0 0 0 chr12 32717609 32717637 -111068818 + AT_rich Low_complexity Low_complexity 1 28 0 239 209 164 0 chr12 32717902 32717969 -111068486 + MER116 DNA Mariner 3 80 0 239 226 38 19 chr12 32718368 32718421 -111068034 - L2 LINE L2 -78 3235 3182 5609 134 110 29 chr12 32718430 32719096 -111067359 + Tigger3b DNA MER2_type 2 613 -2415 2094 90 38 3 chr12 32719096 32719385 -111067070 + AluSg SINE Alu 1 299 -11 5609 134 110 29 chr12 32719385 32719856 -111066599 + Tigger3b DNA MER2_type 613 1231 0 1947 146 3 0 chr12 32720086 32720380 -111066075 - AluSx SINE Alu -17 295 1 26 50 0 0 chr12 32720883 32720923 -111065532 + AT_rich Low_complexity Low_complexity 1 40 0 297 128 0 0 chr12 32721347 32721394 -111065061 + (TTC)n Simple_repeat Simple_repeat 3 49 0 253 186 0 0 chr12 32721637 32721680 -111064775 - MIR SINE MIR 0 262 220 27 0 0 0 chr12 32721938 32721965 -111064490 + AT_rich Low_complexity Low_complexity 1 27 0 452 282 7 0 chr12 32722660 32722802 -111063653 - MER103 DNA DNA -13 153 11 778 225 55 10 chr12 32724816 32725016 -111061439 - MER3 DNA MER1_type 0 209 1 2293 118 3 0 chr12 32726375 32726680 -111059775 - AluSx SINE Alu -6 306 1 261 0 0 0 chr12 32726742 32726771 -111059684 + (TG)n Simple_repeat Simple_repeat 2 30 0 1914 104 86 0 chr12 32726884 32727162 -111059293 + AluSx SINE Alu 1 302 -10 1939 127 4 4 chr12 32727600 32727875 -111058580 - AluJb SINE Alu -23 289 15 34 55 0 0 chr12 32728043 32728098 -111058357 + AT_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr12 32728174 32728216 -111058239 + AT_rich Low_complexity Low_complexity 1 42 0 666 297 52 22 chr12 32729968 32730372 -111056083 + L1MC4a LINE L1 5495 5910 -1898 352 220 229 47 chr12 32730831 32731045 -111055410 + HAL1b LINE L1 1064 1316 -32 404 301 159 4 chr12 32732000 32732239 -111054216 - L1ME LINE L1 -488 5633 5358 246 323 30 0 chr12 32732254 32732418 -111054037 - L1ME LINE L1 -814 5332 5164 195 235 270 17 chr12 32733977 32734092 -111052363 + L2 LINE L2 2899 3042 -271 284 119 0 0 chr12 32735118 32735160 -111051295 + 5S rRNA rRNA 1 42 -79 736 218 40 6 chr12 32735766 32735940 -111050515 - MER5A DNA MER1_type -9 180 1 201 286 98 74 chr12 32737540 32737743 -111048712 - L2 LINE L2 0 3313 3106 4384 127 59 7 chr12 32737752 32738498 -111047957 + LTR1 LTR ERV1 1 785 0 180 0 0 0 chr12 32739965 32739985 -111046470 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 339 25 0 0 chr12 32739984 32740024 -111046431 + (TG)n Simple_repeat Simple_repeat 2 41 0 1496 185 38 4 chr12 32740061 32740326 -111046129 - AluJb SINE Alu -38 274 1 392 273 116 37 chr12 32740441 32740657 -111045798 + L2 LINE L2 2128 2360 -954 3876 154 47 7 chr12 32740729 32741458 -111044997 + L1MD1 LINE L1 5476 6233 -9 208 333 0 46 chr12 32741943 32742030 -111044425 + L2 LINE L2 3231 3313 0 283 313 158 42 chr12 32742031 32742315 -111044140 - L2 LINE L2 -701 2613 2297 2236 120 3 3 chr12 32742786 32743095 -111043360 + AluSx SINE Alu 1 309 -3 1114 199 26 22 chr12 32743140 32743371 -111043084 + MER8 DNA MER2_type 8 239 0 24 0 0 0 chr12 32743381 32743405 -111043050 + AT_rich Low_complexity Low_complexity 1 24 0 185 245 38 19 chr12 32744017 32744070 -111042385 + MIR SINE MIR 151 204 -58 1871 143 0 38 chr12 32744072 32744204 -111042251 + AluJb SINE Alu 1 137 -175 2148 117 10 3 chr12 32744204 32744504 -111041951 + AluSx SINE Alu 1 302 -10 1871 143 0 38 chr12 32744504 32744685 -111041770 + AluJb SINE Alu 137 302 -10 336 284 123 0 chr12 32745094 32745138 -111041317 - L1MC/D LINE L1 -2152 5656 5619 432 0 0 0 chr12 32745138 32745186 -111041269 + (TG)n Simple_repeat Simple_repeat 2 49 0 336 284 123 0 chr12 32745186 32745303 -111041152 - L1MC/D LINE L1 -2189 5619 5475 5685 213 72 12 chr12 32746673 32747007 -111039448 + L1MB8 LINE L1 3141 3453 -2693 200 33 0 33 chr12 32747007 32747037 -111039418 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5685 213 72 12 chr12 32747037 32748553 -111037902 + L1MB8 LINE L1 3453 5103 -1043 1077 144 58 4 chr12 32748555 32748765 -111037690 + AluJb SINE Alu 1 305 -7 3297 158 139 11 chr12 32748765 32749711 -111036744 + L1MB8 LINE L1 5100 6173 -5 21 71 0 0 chr12 32749839 32749881 -111036574 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 122 21 chr12 32750821 32751009 -111035446 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 32751356 32751385 -111035070 + AT_rich Low_complexity Low_complexity 1 29 0 425 293 64 6 chr12 32751389 32751546 -111034909 + HAL1 LINE L1 4 169 -2338 709 187 64 41 chr12 32751624 32751795 -111034660 + MIR SINE MIR 1 175 -87 492 224 153 90 chr12 32751911 32752134 -111034321 + MIR SINE MIR 26 262 0 194 298 133 46 chr12 32752379 32752530 -111033925 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 32752982 32753012 -111033443 + AT_rich Low_complexity Low_complexity 1 30 0 570 233 19 92 chr12 32753659 32753865 -111032590 + L2 LINE L2 3119 3309 -4 23 68 0 0 chr12 32754484 32754528 -111031927 + AT_rich Low_complexity Low_complexity 1 44 0 2979 174 38 21 chr12 32755118 32756237 -111030218 + L1MA8 LINE L1 4767 5897 -394 1097 129 35 10 chr12 32756252 32756454 -111030001 - L1MC2 LINE L1 -181 6163 5957 842 120 180 6 chr12 32756476 32756867 -111029588 - L1MA8 LINE L1 0 6291 5775 249 209 75 0 chr12 32756897 32756964 -111029491 + Charlie7 DNA MER1_type 2541 2612 0 1716 179 3 3 chr12 32757192 32757477 -111028978 - AluJb SINE Alu -27 285 1 24 53 0 0 chr12 32757772 32757810 -111028645 + AT_rich Low_complexity Low_complexity 1 38 0 313 242 54 60 chr12 32757929 32758078 -111028377 + L1MC4a LINE L1 4568 4715 -1431 693 268 100 53 chr12 32758446 32758976 -111027479 + L1MC4a LINE L1 5379 5933 -1875 984 113 0 0 chr12 32759295 32759463 -111026992 + L1PA12 LINE L1 5715 5882 -286 921 136 0 0 chr12 32759756 32759888 -111026567 - AluSg/x SINE Alu -17 293 162 2138 125 168 77 chr12 32759889 32760472 -111025983 + MER4-int LTR ERV1 47 682 -5916 182 61 0 61 chr12 32760610 32760643 -111025812 + (GAA)n Simple_repeat Simple_repeat 3 33 0 1827 143 84 26 chr12 32760851 32761194 -111025261 - THE1B LTR MaLR -1 363 1 392 312 24 8 chr12 32761256 32761381 -111025074 - MIR3 SINE MIR -41 167 41 263 256 105 12 chr12 32761539 32761625 -111024830 - L2 LINE L2 -1 3271 3178 430 149 228 35 chr12 32761629 32761844 -111024611 + FLAM_C SINE Alu 1 237 0 205 219 62 0 chr12 32762711 32762775 -111023680 - MIR SINE MIR -42 220 153 1336 197 82 82 chr12 32762779 32762830 -111023625 - LTR8A LTR ERV1 0 727 677 2051 139 0 0 chr12 32762830 32763124 -111023331 + AluSx SINE Alu 1 294 -18 1336 197 82 82 chr12 32763124 32763575 -111022880 - LTR8A LTR ERV1 -49 678 225 302 182 91 26 chr12 32763687 32763764 -111022691 - LTR8 LTR ERV1 -609 82 1 529 289 30 0 chr12 32763769 32763904 -111022551 - MIR SINE MIR -115 147 9 456 289 20 27 chr12 32763964 32764113 -111022342 + L2 LINE L2 3162 3309 -4 1159 258 111 11 chr12 32764318 32764865 -111021590 - L2 LINE L2 0 3313 2707 306 304 161 9 chr12 32764886 32764998 -111021457 + L2 LINE L2 3126 3254 -18 280 339 59 46 chr12 32765182 32765421 -111021034 - L2 LINE L2 -337 2977 2736 25395 100 13 10 chr12 32767207 32771091 -111015364 + L1PA6 LINE L1 22 3914 -2232 553 76 0 0 chr12 32771091 32771170 -111015285 + L1PA5 LINE L1 6075 6153 -1 * 11165 60 12 10 chr12 32771169 32772734 -111013721 + L1PA6 LINE L1 3912 5490 -664 2304 101 0 3 chr12 32772734 32773032 -111013423 + AluY SINE Alu 1 297 -14 11165 60 12 10 chr12 32773032 32773699 -111012756 + L1PA6 LINE L1 5490 6154 0 257 224 47 12 chr12 32773852 32773937 -111012518 - L1MC4 LINE L1 -26 8016 7929 30 69 0 0 chr12 32774080 32774138 -111012317 + AT_rich Low_complexity Low_complexity 1 58 0 370 271 33 81 chr12 32774276 32774486 -111011969 - L1ME3A LINE L1 -60 6110 5911 744 255 53 35 chr12 32774512 32774853 -111011602 - L1ME LINE L1 -3529 3638 3292 7404 211 21 21 chr12 32774866 32777063 -111009392 - L1M4 LINE L1 -4326 2842 634 308 248 87 35 chr12 32778018 32778177 -111008278 - L1ME LINE L1 -5900 1257 1093 1184 173 98 26 chr12 32778247 32778584 -111007871 + MSTC LTR MaLR 34 428 0 5274 121 32 16 chr12 32778659 32779512 -111006943 - Tigger3(Golem) DNA MER2_type -1 3028 2163 912 228 0 0 chr12 32779506 32779668 -111006787 - Tigger3(Golem) DNA MER2_type -2866 163 2 * 1243 122 76 5 chr12 32779707 32779904 -111006551 - MER2 DNA MER2_type -134 211 1 435 268 43 0 chr12 32779911 32780049 -111006406 + L1ME4a LINE L1 5977 6120 -1 4198 170 66 41 chr12 32780145 32780967 -111005488 - MER21B LTR ERV1 -21 842 1 425 242 102 45 chr12 32781063 32781220 -111005235 - MIR3 SINE MIR -23 185 20 1864 149 3 3 chr12 32781501 32781796 -111004659 + AluSx SINE Alu 1 295 -17 211 351 181 30 chr12 32781842 32782141 -111004314 + L2 LINE L2 2927 3270 -2 2032 139 0 0 chr12 32783109 32783412 -111003043 - AluSx SINE Alu -9 303 1 1168 222 9 4 chr12 32783803 32784033 -111002422 + MIR SINE MIR 32 262 0 260 235 126 84 chr12 32785035 32785154 -111001301 - MIR3 SINE MIR -47 161 38 453 156 10 73 chr12 32786069 32786165 -111000290 + MIR SINE MIR 73 162 -100 292 98 0 0 chr12 32787921 32787962 -110998493 + MIR SINE MIR 104 144 -64 1970 128 7 0 chr12 32788562 32788859 -110997596 - AluSx SINE Alu -13 299 1 263 159 0 0 chr12 32789152 32789196 -110997259 - L3 LINE CR1 -193 1384 1341 524 323 91 17 chr12 32789489 32789721 -110996734 + MIR SINE MIR 4 252 -10 375 60 0 0 chr12 32789889 32789939 -110996516 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 194 296 84 0 chr12 32789939 32790010 -110996445 - L2 LINE L2 -17 3296 3220 354 377 91 26 chr12 32790212 32790673 -110995782 - L2 LINE L2 -482 2832 2342 205 322 127 35 chr12 32790699 32790770 -110995685 - L2 LINE L2 -1242 2072 2009 1482 158 24 0 chr12 32790770 32791023 -110995432 + AluJb SINE Alu 49 307 -5 205 322 127 35 chr12 32791023 32791265 -110995190 - L2 LINE L2 -1305 2009 1730 198 343 0 15 chr12 32791738 32791805 -110994650 - L3 LINE CR1 -790 787 722 288 0 0 0 chr12 32792171 32792203 -110994252 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 1003 121 6 12 chr12 32792203 32792299 -110994156 + (TTCC)n Simple_repeat Simple_repeat 1 267 0 1003 121 6 12 chr12 32792299 32792472 -110993983 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1650 178 21 0 chr12 32793172 32793448 -110993007 + AluJb SINE Alu 1 285 -27 213 39 0 0 chr12 32793448 32793474 -110992981 + (GGAGAA)n Simple_repeat Simple_repeat 6 31 0 370 294 129 42 chr12 32793580 32795164 -110991291 + L1ME LINE L1 2786 4658 -1488 564 306 86 32 chr12 32795217 32795750 -110990705 + L1ME LINE L1 4743 5304 -842 337 335 43 32 chr12 32795764 32795949 -110990506 + L1ME LINE L1 5357 5543 -631 1061 205 95 108 chr12 32795949 32796396 -110990059 + LTR28 LTR ERV1 1 452 -911 2264 153 23 3 chr12 32796396 32796750 -110989705 + THE1B LTR MaLR 1 361 -3 1061 205 95 108 chr12 32796750 32796844 -110989611 + LTR28 LTR ERV1 452 1232 -131 396 307 70 14 chr12 32796894 32797109 -110989346 + L1ME LINE L1 5548 5774 -396 835 214 10 42 chr12 32797140 32797332 -110989123 - MIR SINE MIR -22 240 55 209 300 57 14 chr12 32798455 32798525 -110987930 + MIR SINE MIR 17 89 -119 190 224 0 20 chr12 32799784 32799833 -110986622 - L2 LINE L2 -1 3271 3224 27 62 0 0 chr12 32799973 32800021 -110986434 + AT_rich Low_complexity Low_complexity 1 48 0 2245 160 6 3 chr12 32800531 32800893 -110985562 + MLT1A1 LTR MaLR 1 363 -2 2252 94 0 0 chr12 32801189 32801488 -110984967 - AluSg SINE Alu -11 299 1 391 277 17 42 chr12 32801864 32801983 -110984472 + L2 LINE L2 3157 3272 0 408 289 62 99 chr12 32802209 32802482 -110983973 - L1MC4a LINE L1 -135 5986 5724 329 325 95 43 chr12 32802508 32802739 -110983716 + MIR SINE MIR 3 245 -17 24 32 0 0 chr12 32803909 32803940 -110982515 + AT_rich Low_complexity Low_complexity 1 31 0 1190 157 0 5 chr12 32804038 32804235 -110982220 + L1PA15 LINE L1 5970 6165 0 212 0 0 35 chr12 32804581 32804610 -110981845 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7540 32 3 0 chr12 32804610 32805671 -110980784 - L1PA4 LINE L1 -13 6142 5087 1772 149 0 29 chr12 32806009 32806317 -110980138 - AluSx SINE Alu -13 299 1 324 308 82 27 chr12 32806725 32806871 -110979584 + MIR3 SINE MIR 3 156 -52 1125 268 80 11 chr12 32806972 32807183 -110979272 + Charlie7 DNA MER1_type 169 364 -2248 581 106 0 0 chr12 32807183 32807268 -110979187 + L1PA10 LINE L1 6076 6160 -8 1125 268 80 11 chr12 32807268 32807429 -110979026 + Charlie7 DNA MER1_type 364 567 -2045 30 0 0 0 chr12 32807452 32807482 -110978973 + AT_rich Low_complexity Low_complexity 1 30 0 1892 99 0 51 chr12 32807482 32807774 -110978681 - AluSx SINE Alu -22 290 14 495 204 76 140 chr12 32807814 32808221 -110978234 + Charlie7 DNA MER1_type 2157 2537 -75 364 175 21 21 chr12 32809120 32809217 -110977238 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 248 200 139 26 chr12 32809217 32809332 -110977123 + Charlie7 DNA MER1_type 2471 2598 -14 3128 143 87 38 chr12 32810228 32810460 -110975995 - LTR9B LTR ERV1 0 644 425 6373 114 23 22 chr12 32810460 32811413 -110975042 - LTR13 LTR ERVK 0 954 1 3128 143 87 38 chr12 32811413 32811695 -110974760 - LTR9B LTR ERV1 -219 425 93 2043 110 7 20 chr12 32811695 32811996 -110974459 + AluSx SINE Alu 1 297 -15 3128 143 87 38 chr12 32811996 32812088 -110974367 - LTR9B LTR ERV1 -551 93 7 1356 185 0 22 chr12 32812088 32812255 -110974200 - HUERS-P3 LTR ERV1 0 8919 8750 4630 45 35 0 chr12 32812255 32812826 -110973629 + LTR10C LTR ERV1 1 591 0 1356 185 0 22 chr12 32812826 32812934 -110973521 - HUERS-P3 LTR ERV1 -169 8750 7158 696 190 45 8 chr12 32813193 32813384 -110973071 - HUERS-P3 LTR ERV1 -551 4329 2383 455 215 0 0 chr12 32813386 32813479 -110972976 - HUERS-P3 LTR ERV1 -1945 6974 6882 3979 175 4 26 chr12 32813486 32813929 -110972526 - HUERS-P3 LTR ERV1 -1998 6921 6497 2079 61 10 17 chr12 32813929 32814265 -110972190 + AluY SINE Alu 1 311 0 3979 175 4 26 chr12 32814265 32814508 -110971947 - HUERS-P3 LTR ERV1 -2422 6497 6250 2964 157 4 7 chr12 32814492 32814980 -110971475 - HUERS-P3 LTR ERV1 -1699 5404 4889 * 822 194 43 0 chr12 32814980 32815119 -110971336 - HUERS-P3 LTR ERV1 -4236 4683 4539 * 8425 166 37 26 chr12 32815112 32817321 -110969134 - HUERS-P3 LTR ERV1 -5314 2104 738 2345 77 3 0 chr12 32817321 32817632 -110968823 - AluSp SINE Alu -1 312 1 8425 166 37 26 chr12 32817632 32817964 -110968491 - HUERS-P3 LTR ERV1 -6680 738 411 320 184 92 101 chr12 32817956 32818065 -110968390 - HUERS-P3 LTR ERV1 -7310 108 1 * 3224 165 53 23 chr12 32818065 32818684 -110967771 - LTR9B LTR ERV1 0 644 7 951 317 57 29 chr12 32818696 32819219 -110967236 + L2 LINE L2 2422 2959 -355 286 152 0 0 chr12 32820781 32820827 -110965628 + MIR SINE MIR 184 229 -33 1416 183 98 87 chr12 32821370 32821869 -110964586 + MER66A LTR ERV1 97 478 0 336 246 29 76 chr12 32823309 32823480 -110962975 + L2 LINE L2 2897 3059 -213 1151 171 36 52 chr12 32823808 32824059 -110962396 - AluJo SINE Alu -19 293 47 1811 143 7 30 chr12 32824181 32824481 -110961974 - AluJo SINE Alu -19 293 1 1943 167 167 49 chr12 32824797 32825287 -110961168 - LTR10A LTR ERV1 -61 548 1 2027 228 128 33 chr12 32826612 32827274 -110959181 - MER50 LTR ERV1 0 734 10 258 310 46 76 chr12 32827514 32827636 -110958819 + MIR SINE MIR 40 156 -63 4319 146 94 13 chr12 32828091 32828853 -110957602 - LTR1B LTR ERV1 -2 824 1 246 273 0 15 chr12 32829573 32829639 -110956816 + MIR SINE MIR 187 251 -11 2935 130 9 0 chr12 32829977 32830401 -110956054 + MSTA LTR MaLR 1 428 0 293 293 121 32 chr12 32830911 32831068 -110955387 - MIR SINE MIR -60 202 32 232 308 0 0 chr12 32831168 32831233 -110955222 + (TG)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr12 32831616 32831638 -110954817 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 405 0 0 0 chr12 32831637 32831682 -110954773 + (CA)n Simple_repeat Simple_repeat 1 45 0 572 263 81 8 chr12 32831911 32832147 -110954308 - MER112 DNA MER1_type -1 255 3 765 62 0 0 chr12 32835683 32835780 -110950675 - L1PA8 LINE L1 0 6172 6076 188 306 65 0 chr12 32836225 32836287 -110950168 - MIR SINE MIR -40 222 157 214 298 188 16 chr12 32836327 32836449 -110950006 - MIR SINE MIR -102 160 21 216 311 0 0 chr12 32837336 32837397 -110949058 + L3 LINE CR1 938 998 -579 252 204 19 0 chr12 32837418 32837472 -110948983 + MER5B DNA MER1_type 3 57 -121 263 192 39 0 chr12 32837490 32837542 -110948913 - MER5B DNA MER1_type -123 55 2 1165 269 156 12 chr12 32837549 32838035 -110948420 + L3 LINE CR1 1012 1567 -10 526 285 81 23 chr12 32838059 32838280 -110948175 - L2 LINE L2 -1 3312 3079 204 179 0 0 chr12 32838775 32838814 -110947641 + (CA)n Simple_repeat Simple_repeat 1 39 0 234 81 0 0 chr12 32840047 32840084 -110946371 + (T)n Simple_repeat Simple_repeat 1 37 0 986 166 28 4 chr12 32841092 32841315 -110945140 - LTR25 LTR ERV1 0 784 339 558 158 26 92 chr12 32841488 32841640 -110944815 - LTR25 LTR ERV1 -438 356 215 282 29 0 0 chr12 32841647 32841682 -110944773 + (TG)n Simple_repeat Simple_repeat 2 36 0 2224 111 0 0 chr12 32841924 32842230 -110944225 - AluSq SINE Alu -7 306 1 384 59 0 0 chr12 32843292 32843343 -110943112 + (TC)n Simple_repeat Simple_repeat 1 51 0 243 61 0 0 chr12 32844015 32844048 -110942407 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1501 188 37 12 chr12 32844876 32845188 -110941267 - MER61B LTR ERV1 -12 413 1 1632 170 7 7 chr12 32845779 32846068 -110940387 - AluJb SINE Alu -17 295 7 204 40 0 0 chr12 32846322 32846347 -110940108 + (CA)n Simple_repeat Simple_repeat 1 25 0 4213 240 74 26 chr12 32846357 32847252 -110939203 + L1MD2 LINE L1 4299 5150 -1209 1724 181 0 3 chr12 32847252 32847550 -110938905 + AluJo SINE Alu 1 297 -15 4213 240 74 26 chr12 32847550 32848524 -110937931 + L1MD2 LINE L1 5150 6346 -13 305 221 15 0 chr12 32848543 32848611 -110937844 + L1MC/D LINE L1 5722 5790 -2018 255 246 86 104 chr12 32849025 32849245 -110937210 - L1MC4 LINE L1 -1 8041 7826 2913 211 60 49 chr12 32849277 32849421 -110937034 - L1ME2 LINE L1 -10 6154 6013 753 157 51 91 chr12 32849421 32849495 -110936960 + MER53 DNA DNA 1 76 -113 408 20 0 0 chr12 32849495 32849544 -110936911 + (TG)n Simple_repeat Simple_repeat 2 50 0 753 157 51 91 chr12 32849544 32849604 -110936851 + MER53 DNA DNA 76 127 -62 1546 170 42 17 chr12 32849604 32849892 -110936563 + AluJo SINE Alu 1 295 -17 753 157 51 91 chr12 32849892 32849953 -110936502 + MER53 DNA DNA 127 189 0 2913 211 60 49 chr12 32849953 32850031 -110936424 - L1ME2 LINE L1 -151 6013 5937 2492 183 26 63 chr12 32850031 32850606 -110935849 + MLT2B3 LTR ERVL 1 554 0 2913 211 60 49 chr12 32850606 32851256 -110935199 - L1ME2 LINE L1 -227 5937 5296 396 0 0 0 chr12 32851256 32851300 -110935155 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 782 155 0 0 chr12 32851302 32851418 -110935037 - FLAM_C SINE Alu -17 116 1 2913 211 60 49 chr12 32851418 32852024 -110934431 - L1ME2 LINE L1 -868 5296 4638 22 0 0 0 chr12 32852044 32852066 -110934389 + AT_rich Low_complexity Low_complexity 1 22 0 2061 114 14 0 chr12 32852088 32852377 -110934078 + AluSx SINE Alu 1 293 -19 935 188 11 0 chr12 32852463 32852639 -110933816 - L1 LINE L1 -3607 2721 2544 7488 177 28 30 chr12 32852644 32854158 -110932297 - L1 LINE L1 -3890 2438 938 1787 176 0 0 chr12 32854158 32854460 -110931995 + AluSx SINE Alu 1 302 -10 7488 177 28 30 chr12 32854460 32855387 -110931068 - L1 LINE L1 -5390 938 10 2417 64 3 3 chr12 32855418 32855729 -110930726 + AluY SINE Alu 1 311 0 262 322 69 0 chr12 32856180 32856267 -110930188 + MIR3 SINE MIR 65 157 -51 23 0 0 0 chr12 32856506 32856529 -110929926 + AT_rich Low_complexity Low_complexity 1 23 0 508 139 0 0 chr12 32856666 32856738 -110929717 - AluY SINE Alu -229 82 11 1027 124 158 6 chr12 32856807 32856984 -110929471 + MSTA LTR MaLR 225 428 0 9487 157 29 24 chr12 32856984 32858628 -110927827 + MSTA-int LTR MaLR 1 1651 0 2633 118 70 0 chr12 32858628 32859028 -110927427 + MSTA LTR MaLR 1 428 0 339 270 120 90 chr12 32859120 32859553 -110926902 + L1MC4 LINE L1 6563 7008 -1034 2101 117 0 3 chr12 32859775 32860074 -110926381 + AluSx SINE Alu 1 298 -14 518 262 247 42 chr12 32860408 32860740 -110925715 - MLT1H LTR MaLR -11 538 139 1625 172 3 14 chr12 32861329 32861619 -110924836 + AluSx SINE Alu 1 287 -25 209 340 38 31 chr12 32861650 32861704 -110924751 - L2 LINE L2 -17 3296 3244 1022 224 82 71 chr12 32861704 32862096 -110924359 - MSTD LTR MaLR 0 396 1 209 340 38 31 chr12 32862096 32862200 -110924255 - L2 LINE L2 -69 3244 3137 273 214 14 14 chr12 32862679 32862749 -110923706 + HsTC2 DNA Tc2 17 86 -1812 665 204 0 102 chr12 32862844 32862958 -110923497 + MER5B DNA MER1_type 18 109 -69 2097 108 7 3 chr12 32862958 32863253 -110923202 - AluSq SINE Alu -17 296 1 665 204 0 102 chr12 32863253 32863314 -110923141 + MER5B DNA MER1_type 109 175 -3 334 239 14 0 chr12 32863324 32863395 -110923060 + Charlie2 DNA MER1_type 9 80 -2782 1517 181 84 3 chr12 32863398 32863707 -110922748 + MER58B DNA MER1_type 2 335 -6 531 206 131 111 chr12 32863707 32863959 -110922496 + Charlie2 DNA MER1_type 72 328 -2454 202 231 0 19 chr12 32863978 32864030 -110922425 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 1169 203 111 6 chr12 32864030 32864119 -110922336 + Charlie2 DNA MER1_type 1900 1978 -884 762 211 0 0 chr12 32864119 32864252 -110922203 + FLAM_A SINE Alu 1 133 0 1169 203 111 6 chr12 32864252 32864477 -110921978 + Charlie2 DNA MER1_type 1978 2247 -615 2261 76 7 7 chr12 32864691 32864994 -110921461 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr12 32866118 32866145 -110920310 + GC_rich Low_complexity Low_complexity 1 27 0 2064 100 0 40 chr12 32867704 32868025 -110918430 + AluSq SINE Alu 5 312 -1 2204 74 7 10 chr12 32868348 32868644 -110917811 - AluY SINE Alu -16 295 1 287 307 95 16 chr12 32868775 32868902 -110917553 + MIR SINE MIR 11 147 -61 214 203 17 17 chr12 32869073 32869132 -110917323 + (TGAA)n Simple_repeat Simple_repeat 4 62 0 327 250 264 0 chr12 32869568 32869708 -110916747 - MIR SINE MIR -26 236 60 818 225 104 26 chr12 32869878 32870109 -110916346 + MIR SINE MIR 8 256 -6 617 260 0 8 chr12 32870497 32870624 -110915831 - LTR39 LTR ERV1 0 783 658 201 344 21 21 chr12 32870626 32870719 -110915736 - L2 LINE L2 -424 2890 2798 3917 145 25 85 chr12 32870722 32871555 -110914900 + LTR39 LTR ERV1 1 783 0 249 238 20 40 chr12 32871680 32871781 -110914674 - L2 LINE L2 -833 2481 2383 1665 245 112 32 chr12 32871832 32872228 -110914227 - MLT1E LTR MaLR -16 577 214 1767 188 142 55 chr12 32872228 32872274 -110914181 - MLT2B2 LTR ERVL -1 514 473 327 49 0 0 chr12 32872274 32872315 -110914140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1767 188 142 55 chr12 32872315 32872520 -110913935 - MLT2B2 LTR ERVL -42 473 287 1989 138 0 0 chr12 32872520 32872811 -110913644 - AluSx SINE Alu -21 291 1 1767 188 142 55 chr12 32872811 32873031 -110913424 - MLT2B2 LTR ERVL -228 287 1 1665 245 112 32 chr12 32873031 32873168 -110913287 - MLT1E LTR MaLR -379 214 1 738 247 72 31 chr12 32873170 32873393 -110913062 - MIR SINE MIR -30 232 1 198 243 122 0 chr12 32873396 32873470 -110912985 - L2 LINE L2 -1001 2313 2231 871 222 4 94 chr12 32873579 32873845 -110912610 + MER87 LTR ERV1 1 242 -299 24 32 0 0 chr12 32873868 32873899 -110912556 + AT_rich Low_complexity Low_complexity 1 31 0 1235 241 35 22 chr12 32873899 32874210 -110912245 + MER87 LTR ERV1 227 541 0 210 310 17 0 chr12 32874241 32874299 -110912156 - L2 LINE L2 -9 3263 3205 23 0 0 0 chr12 32875297 32875320 -110911135 + AT_rich Low_complexity Low_complexity 1 23 0 2361 11 0 28 chr12 32875321 32875606 -110910849 - AluYa5 SINE Alu 0 311 35 248 250 28 156 chr12 32875943 32876053 -110910402 - MER5B DNA MER1_type -18 160 80 183 42 0 0 chr12 32876053 32876077 -110910378 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 248 250 28 156 chr12 32876077 32876146 -110910309 - MER5B DNA MER1_type -98 80 4 471 182 0 0 chr12 32876154 32876231 -110910224 + MER5A DNA MER1_type 3 79 -110 1140 163 31 182 chr12 32876233 32876977 -110909478 + MER4A LTR ERV1 1 465 0 492 273 9 0 chr12 32876977 32877087 -110909368 + MER5A DNA MER1_type 78 188 -1 2469 128 24 69 chr12 32877628 32878137 -110908318 - LTR19A LTR ERV1 0 486 1 280 312 85 18 chr12 32878477 32878759 -110907696 + L1ME LINE L1 5484 5784 -337 735 242 89 5 chr12 32878910 32879100 -110907355 - MIR SINE MIR -52 210 5 1153 203 139 102 chr12 32879476 32879958 -110906497 + MLT1H LTR MaLR 1 549 0 2159 125 7 7 chr12 32880503 32880808 -110905647 + AluSx SINE Alu 1 305 -7 2764 179 19 10 chr12 32880883 32881458 -110904997 - L1MB5 LINE L1 -8 6166 5587 22 0 0 0 chr12 32881649 32881671 -110904784 + AT_rich Low_complexity Low_complexity 1 22 0 445 276 6 6 chr12 32881755 32881925 -110904530 + L1M4 LINE L1 2380 2549 -3597 3559 121 62 12 chr12 32883196 32883777 -110902678 + MER4B LTR ERV1 1 610 0 194 62 31 0 chr12 32883781 32883813 -110902642 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 1552 134 5 77 chr12 32883849 32884221 -110902234 - MER4A LTR ERV1 0 664 261 598 103 21 10 chr12 32884221 32884318 -110902137 - MER4A LTR ERV1 -566 98 1 13940 119 112 103 chr12 32884326 32886364 -110900091 - MER4A-int LTR ERV1 -2 6596 4578 1301 119 0 11 chr12 32886364 32886549 -110899906 - AluSg/x SINE Alu 0 310 128 13940 119 112 103 chr12 32886549 32887845 -110898610 - MER4A-int LTR ERV1 -2020 4578 3295 2015 139 35 0 chr12 32887845 32888133 -110898322 - AluSq SINE Alu -15 298 1 13940 119 112 103 chr12 32888133 32889502 -110896953 - MER4A-int LTR ERV1 -3303 3295 1940 1989 153 3 0 chr12 32889502 32889790 -110896665 + AluSx SINE Alu 1 289 -23 13940 119 112 103 chr12 32889790 32891129 -110895326 - MER4A-int LTR ERV1 -4658 1940 1 1649 139 3 77 chr12 32891131 32891504 -110894951 - MER4A LTR ERV1 0 664 261 534 155 21 10 chr12 32891504 32891601 -110894854 - MER4A LTR ERV1 -566 98 1 876 224 6 0 chr12 32892189 32892363 -110894092 - FRAM SINE Alu -1 175 1 193 346 19 0 chr12 32892462 32892514 -110893941 - L2 LINE L2 -92 3180 3128 1631 281 78 59 chr12 32892556 32893563 -110892892 + HAL1 LINE L1 4 1029 -1478 519 180 135 18 chr12 32893586 32893697 -110892758 + FLAM_A SINE Alu 1 124 -9 336 243 36 29 chr12 32893932 32894072 -110892383 + HAL1b LINE L1 481 621 -727 928 295 113 28 chr12 32894979 32895403 -110891052 - L2 LINE L2 0 3313 2854 1562 217 116 9 chr12 32895405 32895896 -110890559 - MLT1E LTR MaLR 0 593 1 587 333 78 13 chr12 32895913 32896222 -110890233 - L2 LINE L2 -483 2831 2503 351 259 37 9 chr12 32896243 32896351 -110890104 - MIR SINE MIR -146 116 6 426 255 128 0 chr12 32896846 32896987 -110889468 - MIR SINE MIR 0 262 104 313 246 0 0 chr12 32897677 32897742 -110888713 - LTR16C LTR ERVL -194 297 233 866 268 80 21 chr12 32897961 32898225 -110888230 + L1MC4a LINE L1 5493 5678 -443 512 237 0 0 chr12 32898225 32898356 -110888099 - L1PB4 LINE L1 0 6156 6026 866 268 80 21 chr12 32898356 32898470 -110887985 + L1MC4a LINE L1 5678 5784 -337 255 163 41 0 chr12 32898983 32899032 -110887423 + MER74B LTR ERVL 3 53 -569 961 253 15 11 chr12 32899094 32899359 -110887096 + MER74B LTR ERVL 193 458 -164 263 125 109 16 chr12 32899523 32899587 -110886868 - MLT1C LTR MaLR 0 467 398 1387 191 50 47 chr12 32899674 32899893 -110886562 - MLT1C LTR MaLR -63 404 182 2473 66 0 7 chr12 32899893 32900196 -110886259 - AluY SINE Alu -10 301 1 1387 191 50 47 chr12 32900196 32900379 -110886076 - MLT1C LTR MaLR -285 182 1 4372 137 39 33 chr12 32900379 32900644 -110885811 - L1MB8 LINE L1 -35 6143 5881 2016 135 0 14 chr12 32900644 32900964 -110885491 - AluSq SINE Alu 0 313 2 4372 137 39 33 chr12 32900964 32901109 -110885346 - L1MB8 LINE L1 -297 5881 5738 2173 84 3 36 chr12 32901109 32901418 -110885037 - AluSg1 SINE Alu -10 299 1 4372 137 39 33 chr12 32901418 32902056 -110884399 - L1MB8 LINE L1 -440 5738 5088 246 95 0 0 chr12 32902430 32902472 -110883983 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2187 80 4 0 chr12 32902474 32902749 -110883706 - AluY SINE Alu -30 281 6 619 266 70 41 chr12 32903038 32903354 -110883101 - L1ME4a LINE L1 -195 5926 5602 640 224 21 68 chr12 32903774 32903966 -110882489 - MIR SINE MIR -77 185 3 2249 118 0 3 chr12 32904366 32904672 -110881783 - AluSq SINE Alu -8 305 1 400 294 116 27 chr12 32905113 32905259 -110881196 + L2 LINE L2 3114 3272 0 1871 130 4 4 chr12 32905795 32906095 -110880360 - AluSx SINE Alu 0 305 6 485 269 104 111 chr12 32907135 32907988 -110878467 - L1M2 LINE L1 -5603 1246 493 2390 84 3 10 chr12 32910158 32910468 -110875987 + AluSq SINE Alu 3 310 -3 1154 178 4 61 chr12 32910701 32910932 -110875523 - MER20 DNA MER1_type -1 218 1 1425 278 127 30 chr12 32912581 32913566 -110872889 + L2 LINE L2 2219 3305 -8 10594 117 40 10 chr12 32913743 32914678 -110871777 - Tigger1 DNA MER2_type -1 2417 1403 2361 89 3 0 chr12 32914678 32914982 -110871473 - AluSp SINE Alu -8 305 1 10594 117 40 10 chr12 32914982 32915802 -110870653 - Tigger1 DNA MER2_type -1015 1403 609 786 163 0 44 chr12 32915804 32915964 -110870491 - L1MC1 LINE L1 -88 6245 6093 860 145 53 26 chr12 32915976 32916128 -110870327 - FRAM SINE Alu -21 155 1 546 144 62 0 chr12 32916128 32916225 -110870230 - L1MC2 LINE L1 -238 6106 6004 363 254 90 8 chr12 32916716 32916838 -110869617 - L1M4 LINE L1 -3139 3007 2876 24 53 0 0 chr12 32917020 32917058 -110869397 + AT_rich Low_complexity Low_complexity 1 38 0 760 333 90 58 chr12 32917518 32918609 -110867846 - L2 LINE L2 -1 3271 2105 447 308 30 0 chr12 32918632 32918765 -110867690 - MIR SINE MIR -22 240 104 329 310 190 43 chr12 32918747 32919395 -110867060 - L2 LINE L2 -1212 2102 1360 * 256 328 67 39 chr12 32919941 32920121 -110866334 - L1ME LINE L1 -504 5660 5476 311 264 39 23 chr12 32920131 32920260 -110866195 - L1MB8 LINE L1 -14 6164 6034 1485 162 92 0 chr12 32920274 32920589 -110865866 - L1MB8 LINE L1 -212 5972 5629 763 234 6 0 chr12 32922091 32922262 -110864193 - FRAM SINE Alu -12 164 1 316 246 197 8 chr12 32922521 32922643 -110863812 - MIR SINE MIR -21 241 97 1200 68 0 0 chr12 32922644 32922792 -110863663 - AluY SINE Alu -11 300 153 5793 109 20 8 chr12 32922811 32923955 -110862500 - L1PA13 LINE L1 -11 6152 5007 314 319 0 0 chr12 32923958 32924030 -110862425 - MIR SINE MIR -157 105 34 2501 63 0 0 chr12 32924481 32924784 -110861671 + AluY SINE Alu 1 303 -8 418 242 61 0 chr12 32924967 32925066 -110861389 - L2 LINE L2 -5 3267 3163 1670 192 38 0 chr12 32925084 32925371 -110861084 + AluJo SINE Alu 1 298 -14 2055 152 0 0 chr12 32926222 32926519 -110859936 - AluJb SINE Alu -15 297 1 30 0 0 0 chr12 32926607 32926637 -110859818 + AT_rich Low_complexity Low_complexity 1 30 0 354 100 0 0 chr12 32927468 32927528 -110858927 + (TG)n Simple_repeat Simple_repeat 2 61 0 1590 203 175 15 chr12 32929429 32929965 -110856490 + L1ME1 LINE L1 5536 6157 -9 232 200 0 36 chr12 32930546 32930601 -110855854 - MIR SINE MIR -64 144 92 888 277 27 16 chr12 32932186 32932442 -110854013 + MIR SINE MIR 4 262 0 2215 116 0 3 chr12 32933795 32934105 -110852350 - AluY SINE Alu -2 309 1 283 273 67 13 chr12 32935853 32936003 -110850452 + MER104 DNA Tc2 23 180 0 429 268 121 45 chr12 32936465 32936663 -110849792 + MIR SINE MIR 1 213 -49 237 293 40 73 chr12 32936711 32936861 -110849594 - L2 LINE L2 -25 3288 3144 1719 177 3 16 chr12 32937364 32937669 -110848786 - AluJo SINE Alu -11 301 1 2071 114 3 23 chr12 32939452 32939759 -110846696 - AluSg1 SINE Alu -8 301 1 180 333 116 0 chr12 32940016 32940085 -110846370 + MER5B DNA MER1_type 73 149 -29 877 254 37 14 chr12 32941157 32941374 -110845081 + MIR SINE MIR 26 247 -15 2042 138 24 0 chr12 32941994 32942291 -110844164 + AluSx SINE Alu 1 304 -8 271 294 110 25 chr12 32944398 32944561 -110841894 - L2 LINE L2 -42 3271 3095 4651 151 44 5 chr12 32944776 32945600 -110840855 - L1MB4 LINE L1 0 6180 5325 2379 140 23 10 chr12 32946675 32947067 -110839388 - L1MB3 LINE L1 -2 6181 5785 1600 206 3 7 chr12 32947895 32948201 -110838254 + AluJo SINE Alu 1 305 -7 347 292 92 0 chr12 32948857 32948987 -110837468 - MIR SINE MIR -119 143 2 2288 88 10 10 chr12 32949336 32949644 -110836811 + AluSq SINE Alu 1 308 -5 373 312 39 48 chr12 32949659 32949890 -110836565 + MIR SINE MIR 34 262 0 31 58 0 0 chr12 32950258 32950310 -110836145 + AT_rich Low_complexity Low_complexity 1 52 0 214 284 63 32 chr12 32951627 32951722 -110834733 + MIR3 SINE MIR 88 185 -23 487 250 80 81 chr12 32953224 32953475 -110832980 + MIR SINE MIR 3 250 -12 2305 101 0 0 chr12 32953582 32953880 -110832575 + AluSx SINE Alu 1 298 -14 2367 163 74 52 chr12 32953990 32954488 -110831967 - LTR22 LTR ERVK 0 509 1 1755 163 10 7 chr12 32955862 32956151 -110830304 + AluJb SINE Alu 2 291 -21 571 268 144 17 chr12 32956583 32956831 -110829624 - HAL1 LINE L1 -1197 1310 1004 1934 154 82 3 chr12 32956831 32957150 -110829305 + MER2 DNA MER2_type 1 344 0 571 268 144 17 chr12 32957150 32957248 -110829207 - HAL1 LINE L1 -1503 1004 920 394 284 123 0 chr12 32958316 32958433 -110828022 + L1MC/D LINE L1 5475 5619 -2189 432 0 0 0 chr12 32958433 32958481 -110827974 + (CA)n Simple_repeat Simple_repeat 2 49 0 394 284 123 0 chr12 32958481 32958525 -110827930 + L1MC/D LINE L1 5619 5656 -2152 1861 143 0 38 chr12 32958934 32959115 -110827340 - AluJb SINE Alu -10 302 137 2146 117 10 3 chr12 32959115 32959415 -110827040 - AluSx SINE Alu -10 302 1 1861 143 0 38 chr12 32959415 32959547 -110826908 - AluJb SINE Alu -175 137 1 183 245 38 19 chr12 32959549 32959602 -110826853 - MIR SINE MIR -58 204 151 24 0 0 0 chr12 32960214 32960238 -110826217 + AT_rich Low_complexity Low_complexity 1 24 0 1205 199 26 22 chr12 32960248 32960479 -110825976 - MER8 DNA MER2_type 0 239 8 2230 119 3 3 chr12 32960524 32960834 -110825621 - AluSx SINE Alu -2 310 1 262 306 162 46 chr12 32961305 32961589 -110824866 + L2 LINE L2 2297 2613 -701 204 333 0 46 chr12 32961590 32961677 -110824778 - L2 LINE L2 0 3313 3231 4247 154 46 7 chr12 32962162 32962894 -110823561 - L1MD1 LINE L1 -9 6233 5473 385 269 116 37 chr12 32962963 32963179 -110823276 - L2 LINE L2 -954 2360 2128 1480 185 38 4 chr12 32963294 32963559 -110822896 + AluJb SINE Alu 1 274 -38 339 25 0 0 chr12 32963596 32963636 -110822819 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr12 32963635 32963655 -110822800 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 224 299 45 57 chr12 32963669 32963846 -110822609 - L2 LINE L2 -1365 1949 1775 3743 125 50 7 chr12 32965122 32965737 -110820718 - LTR1 LTR ERV1 0 785 144 1309 105 6 0 chr12 32965744 32965925 -110820530 - L1M2 LINE L1 -478 5813 5632 2291 145 54 10 chr12 32965926 32966333 -110820122 + L1MA8 LINE L1 5867 6291 0 293 310 56 76 chr12 32966704 32966901 -110819554 - MIR3 SINE MIR -7 201 9 502 273 56 0 chr12 32966942 32967085 -110819370 - MIR SINE MIR -10 252 102 364 269 38 67 chr12 32967978 32968174 -110818281 + MIR SINE MIR 8 192 -50 310 173 284 12 chr12 32968853 32968961 -110817494 + MIR SINE MIR 41 174 -67 410 212 51 88 chr12 32969084 32969112 -110817343 - MIR SINE MIR -27 235 208 1527 201 0 0 chr12 32969112 32969351 -110817104 + MER8 DNA MER2_type 1 239 0 2128 124 62 19 chr12 32969361 32969684 -110816771 - MER1B DNA MER1_type 0 337 1 410 212 51 88 chr12 32969684 32969781 -110816674 - MIR SINE MIR -63 199 104 204 67 0 0 chr12 32970108 32970138 -110816317 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 2095 115 10 30 chr12 32971184 32971488 -110814967 - AluSx SINE Alu -14 298 1 278 257 43 0 chr12 32971826 32971896 -110814559 - MER91 DNA MER1_type -67 73 1 748 204 141 74 chr12 32972294 32972586 -110813869 + MLT1J LTR MaLR 5 339 -172 1015 137 74 6 chr12 32972586 32972761 -110813694 - MER5A DNA MER1_type 0 189 3 748 204 141 74 chr12 32972761 32972915 -110813540 + MLT1J LTR MaLR 339 481 -30 315 201 69 132 chr12 32974000 32974144 -110812311 - L2 LINE L2 -2 3270 3136 2150 97 0 0 chr12 32974787 32975065 -110811390 + AluSq SINE Alu 33 310 -3 315 273 101 58 chr12 32975495 32975634 -110810821 + MIR SINE MIR 7 151 -57 1434 114 64 18 chr12 32975675 32975895 -110810560 + MER30 DNA MER1_type 1 230 0 827 61 0 0 chr12 32975956 32976055 -110810400 + THE1A LTR MaLR 256 354 -1 266 203 159 0 chr12 32977038 32977107 -110809348 + MIR SINE MIR 73 153 -55 252 191 29 29 chr12 32977134 32977202 -110809253 + MIR SINE MIR 68 135 -127 1937 158 31 31 chr12 32977982 32978369 -110808086 + MER45B DNA AcHobo 654 1040 0 303 272 0 37 chr12 32978426 32978507 -110807948 - L2 LINE L2 -5 3308 3231 2455 89 0 0 chr12 32978539 32978841 -110807614 - AluSx SINE Alu -10 302 1 463 300 12 1 chr12 32979851 32979990 -110806465 - MIR SINE MIR -58 150 6 380 228 256 39 chr12 32981450 32981704 -110804751 - L2 LINE L2 0 3313 3005 202 259 129 26 chr12 32981719 32981835 -110804620 - MIR SINE MIR -61 147 20 829 266 46 19 chr12 32985291 32985550 -110800905 + LTR16A LTR ERVL 178 443 -7 1372 188 65 27 chr12 32985974 32986342 -110800113 - MER3 DNA MER1_type 0 2615 2234 651 178 31 31 chr12 32986345 32986474 -110799981 - MER3 DNA MER1_type -41 168 40 2386 147 40 19 chr12 32986986 32987409 -110799046 + MSTB1 LTR MaLR 1 432 0 396 0 0 0 chr12 32987825 32987869 -110798586 + (CA)n Simple_repeat Simple_repeat 2 45 0 2590 68 0 0 chr12 32988011 32988320 -110798135 - AluY SINE Alu -2 309 1 207 0 0 0 chr12 32989182 32989205 -110797250 + (T)n Simple_repeat Simple_repeat 1 23 0 296 301 0 48 chr12 32989673 32989730 -110796725 - L1ME LINE L1 -328 5793 5735 2307 96 7 3 chr12 32989730 32990031 -110796424 - AluSx SINE Alu -10 302 1 296 301 0 48 chr12 32990031 32990139 -110796316 - L1ME LINE L1 -386 5735 5636 233 310 46 0 chr12 32990194 32990281 -110796174 - L1MC4 LINE L1 -1337 6705 6615 317 250 68 34 chr12 32990797 32990973 -110795482 + L1M4 LINE L1 2173 2354 -3792 2309 106 3 0 chr12 32991012 32991313 -110795142 - AluSx SINE Alu -10 302 1 1224 148 16 146 chr12 32991432 32991664 -110794791 + MER33 DNA MER1_type 2 170 -2415 1555 98 5 0 chr12 32991664 32991888 -110794567 + L1PA14 LINE L1 5936 6160 -1 1224 148 16 146 chr12 32991888 32992026 -110794429 + MER33 DNA MER1_type 170 324 0 234 128 0 0 chr12 32993180 32993219 -110793236 + (TC)n Simple_repeat Simple_repeat 1 39 0 719 280 0 0 chr12 32993273 32993430 -110793025 + MER45A DNA AcHobo 1 157 -21 319 363 28 32 chr12 32993645 32993893 -110792562 + L2 LINE L2 2832 3078 -194 404 345 60 12 chr12 32994384 32994552 -110791903 + MER91A DNA MER1_type 16 191 -5 217 325 62 0 chr12 32994594 32994674 -110791781 + L2 LINE L2 3156 3240 -32 233 296 176 0 chr12 32995135 32995243 -110791212 - MIR3 SINE MIR -15 193 67 198 313 0 0 chr12 32995844 32995908 -110790547 - MIR3 SINE MIR -35 173 110 195 152 0 0 chr12 32995914 32995960 -110790495 + GA-rich Low_complexity Low_complexity 2 47 0 539 287 75 32 chr12 32996126 32996408 -110790047 - L2 LINE L2 0 3313 3020 1777 146 69 39 chr12 32996430 32996794 -110789661 + THE1C LTR MaLR 1 375 0 555 312 32 28 chr12 32996903 32997150 -110789305 - L2 LINE L2 -437 2877 2630 198 0 0 0 chr12 32997507 32997529 -110788926 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 755 186 0 0 chr12 32997529 32997647 -110788808 - FLAM_C SINE Alu -23 120 3 441 260 118 39 chr12 32997849 32998103 -110788352 - L2 LINE L2 -10 3303 3030 239 329 109 7 chr12 32998740 32998877 -110787578 + MIR SINE MIR 34 184 -78 420 37 0 0 chr12 32999220 32999274 -110787181 + (TG)n Simple_repeat Simple_repeat 2 55 0 240 313 0 16 chr12 32999298 32999362 -110787093 - L2 LINE L2 -25 3247 3185 541 219 74 107 chr12 32999434 32999741 -110786714 + MLT1L LTR MaLR 99 466 -149 564 231 14 0 chr12 32999768 32999911 -110786544 - MER104 DNA Tc2 -30 150 6 455 218 45 9 chr12 32999927 33000037 -110786418 + MLT1J LTR MaLR 391 504 -7 292 231 67 58 chr12 33000043 33000147 -110786308 - MIR SINE MIR -79 183 79 441 92 40 13 chr12 33001080 33001156 -110785299 - LTR15 LTR ERV1 -6 487 410 4921 182 78 24 chr12 33001932 33002457 -110783998 - L1MD1 LINE L1 0 6242 5747 1725 178 3 25 chr12 33002457 33002771 -110783684 - AluJo SINE Alu -3 309 3 4921 182 78 24 chr12 33002771 33003293 -110783162 - L1MD1 LINE L1 -495 5747 5255 2440 71 10 0 chr12 33003293 33003589 -110782866 - AluY SINE Alu -12 299 1 4921 182 78 24 chr12 33003589 33004082 -110782373 - L1MD1 LINE L1 -987 5255 4602 208 0 30 30 chr12 33004082 33004115 -110782340 + (TA)n Simple_repeat Simple_repeat 2 34 0 4921 182 78 24 chr12 33004115 33004284 -110782171 - L1MD1 LINE L1 -1640 4602 4444 526 145 179 17 chr12 33004285 33004402 -110782053 + MLT1A1 LTR MaLR 2 137 -228 248 331 21 21 chr12 33004458 33004600 -110781855 - MLT1L LTR MaLR -8 607 466 402 184 128 9 chr12 33004696 33004805 -110781650 - MLT1L LTR MaLR -327 288 167 335 313 173 7 chr12 33004861 33005011 -110781444 - MER20B DNA MER1_type -608 175 1 562 256 30 6 chr12 33005131 33005295 -110781160 - MIR SINE MIR -3 259 92 1553 158 4 8 chr12 33005371 33005648 -110780807 - AluSx SINE Alu 0 305 30 587 108 11 0 chr12 33006266 33006359 -110780096 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 441 0 0 0 chr12 33007011 33007060 -110779395 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 516 164 46 186 chr12 33007933 33008196 -110778259 - L1MC4 LINE L1 -263 7779 7554 646 260 20 30 chr12 33008289 33008489 -110777966 - MIR SINE MIR -62 200 3 198 0 0 0 chr12 33008613 33008635 -110777820 + (TG)n Simple_repeat Simple_repeat 1 22 0 1954 139 81 23 chr12 33008914 33009258 -110777197 - THE1B LTR MaLR 0 364 1 336 304 27 0 chr12 33009320 33009432 -110777023 - MIR3 SINE MIR -41 167 53 245 244 105 12 chr12 33009603 33009689 -110776766 - L2 LINE L2 -1 3271 3178 510 148 241 19 chr12 33009692 33009800 -110776655 + FLAM_C SINE Alu 1 132 -1 492 110 20 20 chr12 33009805 33009905 -110776550 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 181 219 62 0 chr12 33010772 33010836 -110775619 - MIR SINE MIR -42 220 153 1498 200 74 99 chr12 33010840 33010891 -110775564 - LTR8A LTR ERV1 0 727 676 2073 139 0 0 chr12 33010891 33011185 -110775270 + AluSx SINE Alu 1 294 -18 1498 200 74 99 chr12 33011185 33011688 -110774767 - LTR8A LTR ERV1 -51 676 187 335 182 91 26 chr12 33011748 33011825 -110774630 - LTR8 LTR ERV1 -609 82 1 480 289 30 0 chr12 33011830 33011965 -110774490 - MIR SINE MIR -115 147 9 406 289 20 27 chr12 33012025 33012174 -110774281 + L2 LINE L2 3162 3309 -4 1025 258 111 11 chr12 33012379 33012926 -110773529 - L2 LINE L2 0 3313 2707 266 304 161 9 chr12 33012947 33013059 -110773396 + L2 LINE L2 3126 3254 -18 189 343 59 46 chr12 33013243 33013482 -110772973 - L2 LINE L2 -337 2977 2736 27293 100 13 10 chr12 33015268 33019152 -110767303 + L1PA6 LINE L1 22 3914 -2232 571 76 0 0 chr12 33019152 33019231 -110767224 + L1PA5 LINE L1 6075 6153 -1 * 11450 60 12 10 chr12 33019230 33020795 -110765660 + L1PA6 LINE L1 3912 5490 -664 2325 101 0 3 chr12 33020795 33021093 -110765362 + AluY SINE Alu 1 297 -14 11450 60 12 10 chr12 33021093 33021760 -110764695 + L1PA6 LINE L1 5490 6154 0 274 248 79 0 chr12 33021897 33021998 -110764457 - L1MC4 LINE L1 -5 8037 7929 30 69 0 0 chr12 33022141 33022199 -110764256 + AT_rich Low_complexity Low_complexity 1 58 0 431 271 33 81 chr12 33022337 33022547 -110763908 - L1ME3A LINE L1 -60 6110 5911 860 253 58 35 chr12 33022573 33022921 -110763534 - L1M4 LINE L1 -3529 3638 3283 6870 209 22 20 chr12 33022927 33024846 -110761609 - L1M4 LINE L1 -4326 2842 907 223 322 119 0 chr12 33025245 33025363 -110761092 + MIR SINE MIR 7 138 -124 1478 172 113 59 chr12 33025463 33025905 -110760550 - MER110A LTR ERV1 0 468 3 1872 198 47 21 chr12 33026076 33026500 -110759955 - MLT1C LTR MaLR -27 440 6 435 230 33 46 chr12 33026838 33026990 -110759465 + MER112 DNA MER1_type 100 249 -11 299 338 21 28 chr12 33028020 33028165 -110758290 + MIR3 SINE MIR 24 167 -41 417 158 0 0 chr12 33028165 33028247 -110758208 + CT-rich Low_complexity Low_complexity 2 83 0 1221 106 0 0 chr12 33028247 33028427 -110758028 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 282 289 35 9 chr12 33029954 33030068 -110756387 - MIR SINE MIR -139 123 7 1490 77 0 0 chr12 33030149 33030331 -110756124 + AluSg/x SINE Alu 121 302 -10 207 0 0 0 chr12 33030653 33030676 -110755779 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 2150 113 31 0 chr12 33031290 33031581 -110754874 + AluSx SINE Alu 3 302 -10 549 305 6 23 chr12 33031860 33032037 -110754418 - MIR3 SINE MIR -28 180 7 484 235 26 9 chr12 33032249 33032364 -110754091 - MIR3 SINE MIR -49 159 43 811 172 23 35 chr12 33032532 33032706 -110753749 - MER104 DNA MER2_type -4 176 5 385 259 38 98 chr12 33032877 33033076 -110753379 + MIR SINE MIR 20 203 -59 341 329 21 35 chr12 33033719 33033912 -110752543 + MIR SINE MIR 3 192 -62 601 265 157 10 chr12 33034099 33034303 -110752152 + MIR SINE MIR 16 249 -13 479 216 6 23 chr12 33034809 33034985 -110751470 + CT-rich Low_complexity Low_complexity 6 178 0 875 241 34 65 chr12 33035006 33035421 -110751034 - L1MC5 LINE L1 -51 7910 7509 305 299 30 34 chr12 33036184 33036344 -110750111 - MIR SINE MIR -28 234 76 1345 195 50 44 chr12 33036394 33036441 -110750014 + MER88 LTR ERVL 79 124 -340 1228 84 200 5 chr12 33036441 33036631 -110749824 - MER30 DNA MER1_type 0 230 4 1345 195 50 44 chr12 33036631 33036967 -110749488 + MER88 LTR ERVL 124 464 0 222 222 143 0 chr12 33037033 33037096 -110749359 - MIR3 SINE MIR -36 172 101 215 267 17 17 chr12 33037432 33037492 -110748963 - L3 LINE CR1 -7 1570 1511 308 303 22 0 chr12 33038185 33038274 -110748181 + (CACG)n Simple_repeat Simple_repeat 4 94 0 214 313 83 10 chr12 33039392 33039488 -110746967 + MIR SINE MIR 20 122 -86 1854 150 41 10 chr12 33041989 33042108 -110744347 + AluJo SINE Alu 1 115 -197 180 0 0 0 chr12 33042108 33042128 -110744327 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1854 150 41 10 chr12 33042128 33042302 -110744153 + AluJo SINE Alu 115 303 -9 269 239 36 65 chr12 33042952 33043090 -110743365 - L2 LINE L2 -219 3053 2920 550 316 19 0 chr12 33043643 33043801 -110742654 + MIR SINE MIR 1 161 -101 520 226 35 0 chr12 33044811 33044926 -110741529 - MER20 DNA MER1_type 0 219 101 232 418 22 8 chr12 33045130 33045264 -110741191 - L2 LINE L2 -10 3262 3127 241 215 58 8 chr12 33045530 33045614 -110740841 - L2 LINE L2 -290 2982 2898 225 278 0 0 chr12 33046842 33046896 -110739559 + MER91 DNA MER1_type 54 107 -89 246 179 0 36 chr12 33047478 33047534 -110738921 + Zaphod DNA AcHobo 3978 4031 0 472 339 102 42 chr12 33048452 33048883 -110737572 + L2 LINE L2 2813 3269 -3 389 311 17 8 chr12 33050218 33050337 -110736118 + MIR SINE MIR 26 145 -117 904 188 94 5 chr12 33050803 33050995 -110735460 - MER3 DNA MER1_type 0 209 1 410 220 30 20 chr12 33051900 33052000 -110734455 - MIR SINE MIR -33 229 129 238 352 7 7 chr12 33053969 33054111 -110732344 + (TG)n Simple_repeat Simple_repeat 1 142 0 186 103 0 0 chr12 33054123 33054152 -110732303 + (TG)n Simple_repeat Simple_repeat 2 30 0 1466 152 67 18 chr12 33054154 33054437 -110732018 - MER2 DNA MER2_type -1 344 48 533 289 132 0 chr12 33054760 33054964 -110731491 + MIR SINE MIR 20 250 -12 2101 122 6 3 chr12 33055078 33055389 -110731066 - AluSx SINE Alu 0 312 1 377 231 194 0 chr12 33055392 33055500 -110730955 - MIR SINE MIR -60 148 20 577 268 67 10 chr12 33055695 33055889 -110730566 + MIR SINE MIR 58 262 0 394 305 34 8 chr12 33056784 33056902 -110729553 + MIR3 SINE MIR 34 154 -54 184 321 86 12 chr12 33057163 33057244 -110729211 + L3 LINE CR1 224 310 -1267 620 365 96 58 chr12 33057250 33057873 -110728582 + L3 LINE CR1 417 1098 -479 2051 94 11 0 chr12 33057873 33058148 -110728307 + AluSc SINE Alu 16 293 -16 620 365 96 58 chr12 33058148 33058587 -110727868 + L3 LINE CR1 1098 1519 -58 2105 106 3 7 chr12 33058840 33059142 -110727313 + AluSg SINE Alu 1 301 -9 261 353 17 25 chr12 33059154 33059273 -110727182 - MER5B DNA MER1_type -60 118 1 258 277 135 14 chr12 33059273 33059402 -110727053 - MIR3 SINE MIR -51 157 12 527 283 71 80 chr12 33059606 33059931 -110726524 - L2 LINE L2 -32 3240 2919 289 274 53 11 chr12 33060077 33060172 -110726283 - MIR SINE MIR -68 140 42 216 135 0 0 chr12 33060669 33060706 -110725749 + (TG)n Simple_repeat Simple_repeat 1 37 0 308 184 105 13 chr12 33062017 33062093 -110724362 + MER5A DNA MER1_type 19 101 -88 433 274 123 0 chr12 33062156 33062302 -110724153 + MER5A DNA MER1_type 2 165 -24 221 326 113 14 chr12 33065242 33065383 -110721072 - MIR SINE MIR -13 249 95 906 140 67 11 chr12 33066266 33066445 -110720010 - MER5A DNA MER1_type 0 189 1 2153 108 150 26 chr12 33067860 33068241 -110718214 - MSTA LTR MaLR 0 428 1 1720 106 0 157 chr12 33069494 33069569 -110716886 - MER47A DNA MER2_type -1957 366 281 1902 144 16 13 chr12 33069569 33069875 -110716580 + AluJo SINE Alu 6 312 0 1720 106 0 157 chr12 33069875 33070233 -110716222 - MER47A DNA MER2_type -2042 281 1 527 315 73 23 chr12 33070953 33071172 -110715283 - MIR SINE MIR -13 249 20 358 344 57 54 chr12 33071443 33072126 -110714329 + L2 LINE L2 2500 3259 -13 266 333 141 15 chr12 33078650 33078848 -110707607 - L3 LINE CR1 -166 1411 1189 207 362 45 59 chr12 33079667 33080021 -110706434 + L2 LINE L2 2889 3237 -35 448 315 31 0 chr12 33080321 33080448 -110706007 + MIR3 SINE MIR 69 199 -9 365 219 164 68 chr12 33080456 33080602 -110705853 - MIR SINE MIR -73 189 30 183 247 212 0 chr12 33080683 33080768 -110705687 - MIR SINE MIR -71 191 89 1744 167 10 17 chr12 33081042 33081342 -110705113 + AluJb SINE Alu 1 298 -14 1345 108 0 11 chr12 33081640 33081826 -110704629 + AluSx SINE Alu 1 184 -128 246 176 0 67 chr12 33083357 33083427 -110703028 + MIR SINE MIR 95 158 -104 180 285 217 64 chr12 33083593 33083846 -110702609 - L2 LINE L2 0 3272 2966 1279 167 76 58 chr12 33083846 33084156 -110702299 + AluJb SINE Alu 5 319 0 180 285 217 64 chr12 33084156 33084196 -110702259 - L2 LINE L2 -306 2966 2933 1334 147 64 0 chr12 33084339 33084590 -110701865 + MER33 DNA MER1_type 1 254 -70 210 358 91 41 chr12 33084876 33085097 -110701358 - MIR SINE MIR -30 232 1 497 118 0 0 chr12 33086572 33086648 -110699807 + FLAM_A SINE Alu 47 122 -20 22 0 0 0 chr12 33086649 33086671 -110699784 + AT_rich Low_complexity Low_complexity 1 22 0 1243 203 38 14 chr12 33086674 33086965 -110699490 + L1MB3 LINE L1 5883 6180 -3 376 139 0 47 chr12 33086982 33087068 -110699387 + (GGAAA)n Simple_repeat Simple_repeat 2 83 0 780 143 14 110 chr12 33087212 33087421 -110699034 - MER53 DNA DNA 0 189 1 1539 209 44 9 chr12 33087583 33087932 -110698523 + MLT1A2 LTR MaLR 1 443 -14 216 260 54 0 chr12 33088082 33088175 -110698280 + MIR SINE MIR 63 164 -98 664 168 6 6 chr12 33088312 33088491 -110697964 + (CA)n Simple_repeat Simple_repeat 1 179 0 818 246 92 29 chr12 33089579 33089784 -110696671 + MIR SINE MIR 4 228 -34 2422 149 22 0 chr12 33089784 33090192 -110696263 + L1MB5 LINE L1 5746 6162 -12 818 246 92 29 chr12 33090192 33090226 -110696229 + MIR SINE MIR 228 258 -4 414 316 45 65 chr12 33090634 33091036 -110695419 - MLT1J LTR MaLR -6 505 112 295 254 18 35 chr12 33091125 33091239 -110695216 - L2 LINE L2 -219 3053 2942 712 222 214 40 chr12 33091257 33091627 -110694828 - MLT1J2 LTR MaLR -16 434 1 414 281 269 21 chr12 33092032 33092274 -110694181 - L3 LINE CR1 -21 1556 1255 2203 208 35 22 chr12 33092462 33092971 -110693484 - LTR40a LTR ERVL 0 519 4 1492 261 136 28 chr12 33093311 33093986 -110692469 + L1PBa LINE L1 6 753 -6110 374 214 0 0 chr12 33094021 33094091 -110692364 + L1PBa LINE L1 1094 1163 -5700 9021 157 29 4 chr12 33094113 33096615 -110689840 + L1PBa LINE L1 1337 3901 -2961 1321 55 0 0 chr12 33096631 33096795 -110689660 - AluY SINE Alu -12 299 136 5815 106 4 0 chr12 33096795 33097579 -110688876 + HERVK3 LTR ERVK 6451 7237 -6 2473 167 9 23 chr12 33097584 33098022 -110688433 + LTR3 LTR ERVK 1 432 0 403 97 0 28 chr12 33098028 33098100 -110688355 + L1PB1 LINE L1 6079 6148 -3 390 284 88 31 chr12 33098269 33098530 -110687925 + L1MC4a LINE L1 5296 5571 -2237 376 241 9 35 chr12 33098562 33098678 -110687777 + L1MC4a LINE L1 5699 5811 -1997 1490 194 0 36 chr12 33098757 33099066 -110687389 - AluJo SINE Alu -14 298 1 311 315 47 24 chr12 33099066 33099193 -110687262 + L1MC4a LINE L1 5801 5930 -1878 2290 50 28 0 chr12 33099204 33099487 -110686968 - AluY SINE Alu -20 291 1 679 188 77 44 chr12 33099927 33100108 -110686347 + MER5A DNA MER1_type 1 187 -2 307 267 40 0 chr12 33100174 33100275 -110686180 - MER5A DNA MER1_type -83 106 2 201 274 104 28 chr12 33100519 33100625 -110685830 - MIR SINE MIR -57 151 38 396 0 0 0 chr12 33102102 33102146 -110684309 + (TC)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr12 33102145 33102183 -110684272 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 287 363 49 0 chr12 33103163 33103265 -110683190 + MIR3 SINE MIR 85 191 -17 186 150 0 0 chr12 33105228 33105268 -110681187 + (A)n Simple_repeat Simple_repeat 1 40 0 240 248 37 55 chr12 33105270 33105379 -110681076 + L1ME4a LINE L1 5964 6070 -51 1590 188 0 13 chr12 33105519 33105823 -110680632 + AluJo SINE Alu 6 305 -7 1321 118 51 0 chr12 33108254 33108449 -110678006 - AluSq SINE Alu -108 205 1 962 147 0 0 chr12 33109268 33109425 -110677030 + AluJb SINE Alu 137 293 -19 223 290 80 20 chr12 33109853 33109953 -110676502 - L2 LINE L2 -220 3052 2947 1804 242 106 29 chr12 33111096 33111885 -110674570 - L1MDb LINE L1 -4799 1607 792 575 181 152 0 chr12 33112561 33112699 -110673756 - L1MDb LINE L1 -5958 438 280 425 254 77 81 chr12 33112879 33113127 -110673328 - HAL1 LINE L1 -1220 1287 1041 1517 165 30 3 chr12 33113386 33113683 -110672772 - AluJb SINE Alu -7 305 1 228 286 14 29 chr12 33114158 33114228 -110672227 - L2 LINE L2 -50 3222 3154 21 0 0 0 chr12 33114448 33114469 -110671986 + AT_rich Low_complexity Low_complexity 1 21 0 7496 162 21 23 chr12 33114473 33116786 -110669669 - L1PB1 LINE L1 -6 6145 3846 1593 178 3 11 chr12 33116786 33117073 -110669382 - AluSx SINE Alu -27 285 1 7496 162 21 23 chr12 33117073 33117215 -110669240 - L1PB1 LINE L1 -2305 3846 3705 298 294 23 40 chr12 33117298 33117405 -110669050 - L1MC/D LINE L1 -2006 5802 5698 1204 117 0 0 chr12 33117405 33117576 -110668879 - L1PA10 LINE L1 -1 6167 5997 298 294 23 40 chr12 33117576 33117645 -110668810 - L1MC/D LINE L1 -2110 5698 5629 1942 124 61 28 chr12 33117800 33118163 -110668292 - THE1C LTR MaLR 0 375 1 415 267 70 33 chr12 33118281 33118545 -110667910 - HAL1b LINE L1 -770 1657 1404 2305 129 0 8 chr12 33118545 33118909 -110667546 - L1PA13 LINE L1 -1 6162 5802 573 225 60 28 chr12 33118934 33119116 -110667339 - L1MC5 LINE L1 -63 7898 7711 301 309 21 32 chr12 33119318 33119412 -110667043 - MIR SINE MIR -95 113 21 562 293 141 0 chr12 33119640 33119889 -110666566 - L2 LINE L2 -18 3295 3012 2668 205 25 9 chr12 33119890 33120451 -110666004 - LTR24B LTR ERV1 -6 570 1 535 276 58 36 chr12 33120457 33120682 -110665773 - L2 LINE L2 -353 2961 2732 402 340 89 0 chr12 33121216 33121419 -110665036 + MIR SINE MIR 13 233 -29 612 339 106 9 chr12 33122049 33122711 -110663744 + L2 LINE L2 2557 3309 -4 817 213 0 0 chr12 33122795 33122945 -110663510 + FRAM SINE Alu 1 145 -31 181 50 25 50 chr12 33123070 33123110 -110663345 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 329 168 176 69 chr12 33123118 33123249 -110663206 + L1ME4a LINE L1 5966 6110 -11 528 197 27 132 chr12 33124136 33124370 -110662085 - MLT1C LTR MaLR -223 244 28 279 79 0 0 chr12 33124862 33124900 -110661555 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 333 0 0 chr12 33125282 33125366 -110661089 + (CA)n Simple_repeat Simple_repeat 1 84 0 337 313 55 43 chr12 33125477 33125640 -110660815 + MIR SINE MIR 51 215 -47 234 264 0 0 chr12 33126534 33126587 -110659868 - MIR SINE MIR -6 256 204 366 200 13 0 chr12 33126844 33126919 -110659536 + MER4C LTR ERV1 390 465 0 2201 204 24 44 chr12 33127584 33128089 -110658366 + LTR42 LTR ERVL 1 495 0 1030 279 46 29 chr12 33128232 33128579 -110657876 + MLT1J LTR MaLR 81 433 -78 182 210 97 32 chr12 33128642 33128704 -110657751 + MIR SINE MIR 172 237 -25 2239 85 0 19 chr12 33128917 33129234 -110657221 + AluY SINE Alu 1 311 0 1216 235 71 0 chr12 33129520 33129647 -110656808 + AluJo SINE Alu 2 119 -183 212 0 0 35 chr12 33129647 33129676 -110656779 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1216 235 71 0 chr12 33129676 33129829 -110656626 + AluJo SINE Alu 119 302 0 262 329 36 21 chr12 33129942 33130082 -110656373 + MER87 LTR ERV1 400 541 0 393 254 78 111 chr12 33130209 33130453 -110656002 + MER87-int LTR ERV1 54 289 -1497 2067 71 4 7 chr12 33130458 33130739 -110655716 - AluY SINE Alu -3 308 29 345 303 70 43 chr12 33130960 33131260 -110655195 + MER87-int LTR ERV1 460 767 -6355 1405 309 71 62 chr12 33131545 33132660 -110653795 + MER87-int LTR ERV1 937 2061 -5061 1616 325 56 36 chr12 33132702 33133589 -110652866 + MER87-int LTR ERV1 2208 3063 -4059 1565 197 0 16 chr12 33133589 33133894 -110652561 - AluJo SINE Alu -12 300 1 1616 325 56 36 chr12 33133894 33134205 -110652250 + MER87-int LTR ERV1 3063 3366 -3756 1414 162 31 119 chr12 33134223 33134720 -110651735 + MER4A LTR ERV1 157 465 0 762 182 45 0 chr12 33134722 33134876 -110651579 - Tigger3b DNA MER2_type -149 1082 922 3591 172 74 83 chr12 33134885 33135819 -110650636 + MER21A LTR ERV1 1 925 -6 4632 143 82 8 chr12 33135826 33136376 -110650079 - Tigger3b DNA MER2_type -2101 927 288 1551 203 13 23 chr12 33136376 33136676 -110649779 + AluJo SINE Alu 1 297 -15 4632 143 82 8 chr12 33136676 33136988 -110649467 - Tigger3b DNA MER2_type -2740 288 1 4089 177 45 60 chr12 33137658 33137954 -110648501 - L1MB2 LINE L1 0 6171 5872 1833 173 48 12 chr12 33137954 33138319 -110648136 + MLT2D LTR ERVL 1 383 -31 306 0 0 0 chr12 33138319 33138353 -110648102 + (CA)n Simple_repeat Simple_repeat 2 35 0 1833 173 48 12 chr12 33138353 33138387 -110648068 + MLT2D LTR ERVL 383 414 0 4089 177 45 60 chr12 33138387 33138763 -110647692 - L1MB2 LINE L1 -299 5872 5492 1862 179 0 13 chr12 33138763 33139071 -110647384 - AluJo SINE Alu -7 305 2 243 0 0 0 chr12 33139071 33139098 -110647357 + (TG)n Simple_repeat Simple_repeat 2 28 0 4089 177 45 60 chr12 33139098 33139705 -110646750 - L1MB2 LINE L1 -677 5494 4929 802 254 27 27 chr12 33140141 33140361 -110646094 + MSTB1 LTR MaLR 1 220 -212 628 286 22 43 chr12 33140427 33140658 -110645797 - MIR SINE MIR 0 262 37 2186 42 0 30 chr12 33140659 33140921 -110645534 - AluY SINE Alu -7 304 51 308 363 46 23 chr12 33141394 33141656 -110644799 + L2 LINE L2 2554 2821 -493 5544 114 47 36 chr12 33141674 33143190 -110643265 + pTR5 LTR ERV1 741 2438 0 387 132 13 26 chr12 33143388 33143464 -110642991 - L1M LINE L1 -794 5389 5315 261 325 32 49 chr12 33143792 33143915 -110642540 - MIR3 SINE MIR -30 178 58 578 162 9 18 chr12 33145364 33145475 -110640980 - MLT1A2 LTR MaLR 0 374 265 457 243 65 9 chr12 33145946 33146101 -110640354 + MIR SINE MIR 30 191 -66 483 269 151 21 chr12 33146221 33146407 -110640048 - L2 LINE L2 0 3313 3104 188 224 13 66 chr12 33146505 33146581 -110639874 - L2 LINE L2 -311 3002 2931 446 227 173 32 chr12 33147057 33147242 -110639213 + MIR SINE MIR 47 257 -5 2604 40 10 0 chr12 33148096 33148392 -110638063 + AluY SINE Alu 1 299 -12 2488 74 0 0 chr12 33149220 33149517 -110636938 - AluY SINE Alu -14 297 1 348 210 38 140 chr12 33149650 33149807 -110636648 - HAL1 LINE L1 -379 2128 1988 913 234 59 53 chr12 33149854 33150191 -110636264 - MLT1A2 LTR MaLR 0 374 36 474 100 100 22 chr12 33150191 33150281 -110636174 - FLAM_A SINE Alu -16 126 30 293 320 0 0 chr12 33150563 33150638 -110635817 - HAL1 LINE L1 -1631 876 802 243 309 211 35 chr12 33150666 33151288 -110635167 - HAL1 LINE L1 -1767 740 10 1602 202 11 11 chr12 33151288 33151575 -110634880 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 33152738 33152761 -110633694 + AT_rich Low_complexity Low_complexity 1 23 0 303 314 81 72 chr12 33152798 33153034 -110633421 - MIR SINE MIR -23 239 2 1409 223 20 70 chr12 33153235 33153638 -110632817 - MLT1B LTR MaLR 0 390 8 620 180 0 0 chr12 33153694 33153805 -110632650 + FLAM_A SINE Alu 10 120 -22 239 358 18 8 chr12 33155864 33156025 -110630430 - MIR SINE MIR -69 139 21 217 274 16 0 chr12 33156257 33156319 -110630136 - L2 LINE L2 -24 3248 3186 282 309 170 42 chr12 33156589 33156942 -110629513 + L2 LINE L2 2873 3270 -2 457 355 81 15 chr12 33157794 33158126 -110628329 - L2 LINE L2 -5 3267 2914 198 273 0 0 chr12 33161579 33161623 -110624832 - MIR SINE MIR -66 142 99 439 261 92 8 chr12 33161776 33161906 -110624549 - MIR SINE MIR -75 187 47 191 281 56 34 chr12 33162860 33162949 -110623506 - MIR SINE MIR -114 148 58 2262 89 6 22 chr12 33163964 33164278 -110622177 + AluSx SINE Alu 1 309 -3 228 316 82 0 chr12 33167830 33167928 -110618527 + MIR SINE MIR 46 151 -111 2431 73 0 3 chr12 33167928 33168228 -110618227 + AluY SINE Alu 1 299 -12 637 266 174 23 chr12 33169237 33169607 -110616848 - L1MC4 LINE L1 -807 7001 6534 2184 109 30 0 chr12 33169607 33169909 -110616546 - AluSx SINE Alu -1 311 1 637 266 174 23 chr12 33169909 33170052 -110616403 - L1MC4 LINE L1 -1274 6534 6414 437 286 33 14 chr12 33170172 33170385 -110616070 - L1MC4a LINE L1 -1538 6270 6054 565 267 157 38 chr12 33170620 33170857 -110615598 - L1MC4a LINE L1 -692 5642 5429 240 295 0 13 chr12 33170857 33170935 -110615520 - MER5B DNA MER1_type -101 77 1 2349 96 0 16 chr12 33177576 33177879 -110608576 + AluY SINE Alu 1 298 -13 493 210 58 62 chr12 33178503 33178760 -110607695 + L1MC5 LINE L1 7452 7707 -254 1791 151 0 66 chr12 33178760 33179092 -110607363 + AluSx SINE Alu 1 312 0 271 217 0 33 chr12 33179107 33179167 -110607288 + AluJ/FLAM SINE Alu 3 60 -242 373 237 128 18 chr12 33179178 33179397 -110607058 - L1MC4a LINE L1 -1603 4543 4301 507 33 0 0 chr12 33179410 33179471 -110606984 + (TG)n Simple_repeat Simple_repeat 2 62 0 1510 239 25 23 chr12 33179481 33179920 -110606535 + L1M4 LINE L1 3784 4223 -1923 996 176 37 42 chr12 33179920 33180136 -110606319 - AluJo SINE Alu 0 312 98 950 251 21 4 chr12 33180967 33181210 -110605245 - MLT1C LTR MaLR 0 467 221 396 40 0 0 chr12 33181226 33181276 -110605179 + (TG)n Simple_repeat Simple_repeat 2 51 0 443 195 25 34 chr12 33181276 33181394 -110605061 - MLT1C LTR MaLR -298 169 53 326 347 66 16 chr12 33182341 33182462 -110603993 + L1MC4 LINE L1 6577 6703 -1339 300 346 37 22 chr12 33182875 33183011 -110603444 - MIR SINE MIR -73 189 52 2781 207 41 31 chr12 33183899 33184600 -110601855 + L1MA9 LINE L1 5575 6282 -30 1961 138 3 35 chr12 33185955 33186273 -110600182 + AluSx SINE Alu 5 312 0 1279 115 60 0 chr12 33187050 33187250 -110599205 + L1MA2 LINE L1 6093 6304 0 889 115 14 20 chr12 33187947 33188095 -110598360 + HERVE LTR ERV1 3249 3395 -4418 929 121 7 20 chr12 33189424 33189573 -110596882 + HERVE LTR ERV1 3249 3395 -4418 301 286 116 98 chr12 33189687 33190023 -110596432 - L1MDa LINE L1 -5797 743 402 308 249 85 140 chr12 33190039 33190381 -110596074 + L1M4b LINE L1 415 737 -6122 907 86 71 21 chr12 33191069 33191209 -110595246 + HERVE LTR ERV1 3249 3395 -4418 4196 96 2 10 chr12 33191666 33192269 -110594186 + HERVE LTR ERV1 3249 3846 -3967 1474 249 90 57 chr12 33192280 33193242 -110593213 - SATR1 Satellite Satellite -24 993 1 4230 97 2 10 chr12 33193558 33194157 -110592298 + HERVE LTR ERV1 3253 3846 -3967 1502 220 89 47 chr12 33194168 33194823 -110591632 - SATR1 Satellite Satellite 0 682 1 28 48 0 0 chr12 33195099 33195141 -110591314 + AT_rich Low_complexity Low_complexity 1 42 0 216 293 0 0 chr12 33195687 33195745 -110590710 + L2 LINE L2 3255 3312 -1 1712 157 96 56 chr12 33196199 33196574 -110589881 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr12 33197127 33197148 -110589307 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 33197206 33197234 -110589221 + AT_rich Low_complexity Low_complexity 1 28 0 2243 117 0 0 chr12 33197259 33197549 -110588906 - AluSx SINE Alu -22 290 1 239 324 108 7 chr12 33198727 33198866 -110587589 - MER5A DNA MER1_type -2 187 35 26 0 0 0 chr12 33201005 33201031 -110585424 + AT_rich Low_complexity Low_complexity 1 26 0 208 146 0 24 chr12 33201582 33201623 -110584832 + (CAA)n Simple_repeat Simple_repeat 3 42 0 225 0 0 0 chr12 33205133 33205158 -110581297 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4034 134 34 0 chr12 33207424 33208041 -110578414 + Tigger3b DNA MER2_type 1 638 -593 2144 164 8 11 chr12 33208042 33208401 -110578054 + Tigger3b DNA MER2_type 874 1231 0 307 244 32 32 chr12 33208988 33209111 -110577344 - MIR SINE MIR -1 261 139 234 0 0 0 chr12 33209119 33209145 -110577310 + (CA)n Simple_repeat Simple_repeat 2 27 0 540 329 79 57 chr12 33211042 33211602 -110574853 + HAL1b LINE L1 21 592 -756 760 197 0 0 chr12 33211644 33211771 -110574684 - AluJb SINE Alu -11 301 175 2454 58 0 3 chr12 33211988 33212281 -110574174 - AluY SINE Alu -19 292 1 23 33 0 0 chr12 33212335 33212365 -110574090 + AT_rich Low_complexity Low_complexity 1 30 0 249 301 62 49 chr12 33213114 33213519 -110572936 + L1M4 LINE L1 2853 3262 -2884 718 115 8 41 chr12 33213520 33213642 -110572813 - MER4C LTR ERV1 -347 118 1 484 179 65 92 chr12 33213650 33213704 -110572751 + L1MC4 LINE L1 7864 7918 -124 345 47 0 0 chr12 33213704 33213747 -110572708 + (TG)n Simple_repeat Simple_repeat 2 44 0 484 179 65 92 chr12 33213747 33213876 -110572579 + L1MC4 LINE L1 7918 8042 0 210 143 0 0 chr12 33214222 33214257 -110572198 + (CA)n Simple_repeat Simple_repeat 2 36 0 1517 199 3 14 chr12 33214263 33214560 -110571895 - AluSx SINE Alu -18 294 1 254 228 177 44 chr12 33214780 33214938 -110571517 + L1ME4a LINE L1 5882 6060 -61 2242 32 0 0 chr12 33216319 33216568 -110569887 - L1PA3 LINE L1 -1 6154 5906 306 215 0 0 chr12 33216718 33216797 -110569658 + (TA)n Simple_repeat Simple_repeat 2 80 0 491 261 139 28 chr12 33217210 33217390 -110569065 + MIR SINE MIR 31 230 -32 248 251 60 102 chr12 33217398 33217565 -110568890 - MIR SINE MIR -90 172 13 2595 138 162 22 chr12 33217583 33218046 -110568409 + MER1A DNA MER1_type 1 528 -1 21 71 0 0 chr12 33219200 33219242 -110567213 + AT_rich Low_complexity Low_complexity 1 42 0 2325 84 3 26 chr12 33220197 33220507 -110565948 - AluSx SINE Alu -9 303 1 213 191 0 0 chr12 33220513 33220555 -110565900 - L2 LINE L2 -1 3312 3271 4109 106 9 110 chr12 33221131 33221584 -110564871 + MER4A LTR ERV1 1 353 -311 2179 133 0 0 chr12 33221584 33221892 -110564563 - AluSx SINE Alu -4 308 1 4109 106 9 110 chr12 33221892 33222176 -110564279 + MER4A LTR ERV1 353 664 0 21 71 0 0 chr12 33222329 33222371 -110564084 + AT_rich Low_complexity Low_complexity 1 42 0 548 258 96 24 chr12 33222406 33222573 -110563882 - MIR SINE MIR -61 201 23 236 287 67 85 chr12 33223374 33223705 -110562750 + L1MC/D LINE L1 5321 5645 -2163 1644 168 41 0 chr12 33223755 33224046 -110562409 - AluJo SINE Alu -9 303 1 22 0 0 0 chr12 33225279 33225301 -110561154 + AT_rich Low_complexity Low_complexity 1 22 0 232 274 137 21 chr12 33225742 33225837 -110560618 - MIR SINE MIR -96 112 7 517 354 6 11 chr12 33227112 33227293 -110559162 + MIR SINE MIR 5 184 -78 1961 117 3 14 chr12 33227333 33227654 -110558801 - AluSq SINE Alu 0 318 1 24 32 0 0 chr12 33227695 33227726 -110558729 + AT_rich Low_complexity Low_complexity 1 31 0 276 288 78 53 chr12 33227893 33228174 -110558281 + L1ME LINE L1 5523 5810 -311 2278 111 0 0 chr12 33228821 33229127 -110557328 - AluSg SINE Alu -4 306 1 877 179 23 80 chr12 33229834 33229883 -110556572 - L1MA6 LINE L1 0 6300 6250 2076 140 0 7 chr12 33229883 33230183 -110556272 + AluSx SINE Alu 1 298 -14 877 179 23 80 chr12 33230183 33230211 -110556244 - L1MA6 LINE L1 -50 6250 6222 228 35 0 0 chr12 33230211 33230240 -110556215 + (CA)n Simple_repeat Simple_repeat 2 30 0 877 179 23 80 chr12 33230240 33230424 -110556031 - L1MA6 LINE L1 -78 6222 6053 469 296 37 26 chr12 33232357 33232546 -110553909 + LTR67 LTR ERVL 29 219 -338 351 174 116 174 chr12 33233215 33233387 -110553068 + MER105 DNA DNA 2 163 -41 26827 32 3 1 chr12 33233611 33239631 -110546824 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr12 33239631 33239652 -110546803 + AT_rich Low_complexity Low_complexity 1 21 0 694 323 39 0 chr12 33239737 33239966 -110546489 + MIR SINE MIR 23 260 -2 2204 160 71 13 chr12 33239997 33240333 -110546122 + MSTA LTR MaLR 1 365 -63 2240 121 0 3 chr12 33240333 33240640 -110545815 - AluSq SINE Alu -7 306 1 2204 160 71 13 chr12 33240640 33240696 -110545759 + MSTA LTR MaLR 365 416 -12 244 308 48 29 chr12 33240721 33240825 -110545630 + L2 LINE L2 3171 3276 -37 64 106 0 0 chr12 33241541 33241787 -110544668 + AT_rich Low_complexity Low_complexity 1 246 0 281 307 34 45 chr12 33242471 33242650 -110543805 + MIR SINE MIR 86 262 0 218 203 31 47 chr12 33245049 33245113 -110541342 - MIR SINE MIR -126 136 74 355 361 22 46 chr12 33245402 33245770 -110540685 - L2 LINE L2 -341 2973 2615 302 306 32 81 chr12 33245775 33246023 -110540432 + HAL1 LINE L1 151 386 -2121 2233 53 0 11 chr12 33246023 33246306 -110540149 + AluY SINE Alu 22 301 -10 205 200 0 0 chr12 33246962 33247002 -110539453 + (TA)n Simple_repeat Simple_repeat 2 41 0 2426 73 0 10 chr12 33247073 33247387 -110539068 - AluY SINE Alu 0 311 1 325 258 0 0 chr12 33247400 33247466 -110538989 - MER5A DNA MER1_type -123 66 1 222 328 0 0 chr12 33247609 33247667 -110538788 + L2 LINE L2 3215 3272 0 242 271 188 33 chr12 33247770 33247951 -110538504 - MIR SINE MIR -6 256 48 5640 21 0 0 chr12 33250780 33251391 -110535064 - SVA Other Other -1 1385 775 232 209 30 45 chr12 33251608 33251675 -110534780 - MER92C LTR ERV1 -209 345 280 190 314 186 0 chr12 33251707 33251793 -110534662 + MIR SINE MIR 161 262 0 189 0 0 0 chr12 33251882 33251903 -110534552 + (TAAAAA)n Simple_repeat Simple_repeat 1 21 0 253 138 52 0 chr12 33251931 33251989 -110534466 + L1MB2 LINE L1 6111 6171 0 346 244 71 54 chr12 33252037 33252205 -110534250 + L1M4 LINE L1 3029 3199 -2947 22 56 0 0 chr12 33252752 33252788 -110533667 + AT_rich Low_complexity Low_complexity 1 36 0 209 146 167 0 chr12 33253001 33253049 -110533406 + MER5A DNA MER1_type 134 189 0 213 311 0 0 chr12 33253104 33253149 -110533306 + L2 LINE L2 3013 3057 -256 466 244 26 0 chr12 33253207 33253322 -110533133 - MER58 DNA MER1_type -97 118 1 223 245 53 43 chr12 33253356 33253450 -110533005 + L2 LINE L2 3125 3219 -94 420 225 23 31 chr12 33253496 33253625 -110532830 + MER94 DNA DNA 7 134 0 206 225 0 0 chr12 33253682 33253722 -110532733 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 311 283 162 6 chr12 33254218 33254391 -110532064 - L1ME4a LINE L1 -20 6101 5902 1964 156 3 10 chr12 33254554 33254994 -110531461 - AluJb SINE Alu 0 438 1 2104 91 14 10 chr12 33255322 33255618 -110530837 + AluSq SINE Alu 1 297 -16 281 68 23 0 chr12 33255618 33255662 -110530793 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr12 33256421 33256445 -110530010 + AT_rich Low_complexity Low_complexity 1 24 0 295 319 14 0 chr12 33256648 33256717 -110529738 + MIR SINE MIR 10 79 -183 232 253 0 60 chr12 33256760 33256843 -110529612 + MIR SINE MIR 183 260 -2 1152 88 6 6 chr12 33257250 33257410 -110529045 - L1PA15 LINE L1 -9 6156 5997 234 344 48 8 chr12 33257560 33257685 -110528770 + L2 LINE L2 3180 3309 -4 2017 111 11 0 chr12 33257766 33258045 -110528410 + AluSx SINE Alu 5 286 -26 653 228 70 35 chr12 33258091 33258262 -110528193 + MIR SINE MIR 86 262 0 217 238 0 0 chr12 33258384 33258426 -110528029 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr12 33259419 33259441 -110527014 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr12 33259664 33259707 -110526748 + AT_rich Low_complexity Low_complexity 1 43 0 6975 58 1 0 chr12 33259776 33261198 -110525257 - L1PA7 LINE L1 -4 6150 4726 * 7465 60 19 0 chr12 33261195 33262906 -110523549 + L1PA5 LINE L1 4416 6141 -13 307 305 86 33 chr12 33262969 33263179 -110523276 - L1MEd LINE L1 -5066 1053 833 741 158 175 34 chr12 33264117 33264294 -110522161 + MER3 DNA MER1_type 7 208 -1 224 192 64 0 chr12 33264648 33264726 -110521729 + (TA)n Simple_repeat Simple_repeat 1 83 0 258 308 154 45 chr12 33264804 33264960 -110521495 + MIR SINE MIR 13 185 -77 23 0 0 0 chr12 33265263 33265286 -110521169 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 33266081 33266110 -110520345 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr12 33269859 33269886 -110516569 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3109 75 2 0 chr12 33269903 33270319 -110516136 - L1PA5 LINE L1 0 6154 5738 238 306 0 35 chr12 33270720 33270826 -110515629 + MER5A DNA MER1_type 26 139 -50 21 36 0 0 chr12 33271447 33271475 -110514980 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr12 33272310 33272331 -110514124 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2184 99 0 23 chr12 33272333 33272635 -110513820 - AluSx SINE Alu -17 295 1 235 150 0 50 chr12 33276323 33276383 -110510072 + (TAAAAA)n Simple_repeat Simple_repeat 2 58 0 4614 142 61 61 chr12 33277096 33277411 -110509044 + MER4D LTR ERV1 1 315 -588 612 206 8 0 chr12 33277411 33277542 -110508913 - L1PA11 LINE L1 -5 6169 6038 4614 142 61 61 chr12 33277542 33278129 -110508326 + MER4D LTR ERV1 314 903 0 790 319 19 6 chr12 33278220 33278459 -110507996 + MIR SINE MIR 1 241 -21 251 289 119 13 chr12 33278710 33278869 -110507586 - MLT1L LTR MaLR -24 591 416 239 261 0 11 chr12 33278964 33279056 -110507399 + CT-rich Low_complexity Low_complexity 6 96 0 1193 308 23 21 chr12 33279161 33279589 -110506866 + LTR16A LTR ERVL 17 445 -5 315 282 159 49 chr12 33279964 33280127 -110506328 - MER5A DNA MER1_type 0 189 9 195 256 13 90 chr12 33280174 33280252 -110506203 + MER5B DNA MER1_type 37 108 -70 * 289 308 0 0 chr12 33280229 33280294 -110506161 + MER5A DNA MER1_type 10 74 -115 434 37 0 0 chr12 33280294 33280348 -110506107 - L1PA5 LINE L1 -356 5799 5746 2966 34 0 0 chr12 33280348 33280699 -110505756 + L1PA5 LINE L1 5789 6142 -12 469 241 116 0 chr12 33280704 33280816 -110505639 + MER5A DNA MER1_type 65 189 0 3009 277 34 62 chr12 33281047 33282463 -110503992 + L2 LINE L2 1923 3289 -24 227 286 0 22 chr12 33283187 33283278 -110503177 + L1MC4 LINE L1 6615 6703 -1339 278 275 0 9 chr12 33283305 33283414 -110503041 + (TA)n Simple_repeat Simple_repeat 1 108 0 227 169 211 0 chr12 33283424 33283495 -110502960 + L1MC4 LINE L1 6617 6702 -1340 2496 50 0 10 chr12 33283905 33284206 -110502249 + AluY SINE Alu 1 298 -13 1602 185 7 0 chr12 33284656 33284926 -110501529 + AluJb SINE Alu 3 274 -38 825 87 0 0 chr12 33284926 33285041 -110501414 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 252 0 0 0 chr12 33285042 33285070 -110501385 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 33285069 33285096 -110501359 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1726 225 65 85 chr12 33285231 33285796 -110500659 - MLT2B3 LTR ERVL 0 554 1 9868 171 11 23 chr12 33285796 33287792 -110498663 + L1PA13 LINE L1 348 2278 -4509 239 294 109 0 chr12 33287999 33288091 -110498364 + MIR SINE MIR 46 147 -115 299 100 0 0 chr12 33288773 33288813 -110497642 + L1PB1 LINE L1 6013 6052 -99 370 330 17 0 chr12 33288893 33289008 -110497447 + GA-rich Low_complexity Low_complexity 4 120 0 414 304 65 34 chr12 33290579 33290872 -110495583 + MLT1K LTR MaLR 158 459 -129 887 277 29 0 chr12 33291666 33291904 -110494551 - MIR SINE MIR -3 259 15 315 248 236 0 chr12 33292457 33292614 -110493841 + L2 LINE L2 2863 3056 -257 712 256 150 0 chr12 33292679 33292886 -110493569 + MIR SINE MIR 25 262 0 393 352 41 0 chr12 33292930 33293075 -110493380 + L2 LINE L2 3121 3271 -1 209 336 201 0 chr12 33294799 33294933 -110491522 + MIR SINE MIR 102 262 0 403 299 135 11 chr12 33298452 33298673 -110487782 + MIR SINE MIR 19 261 -1 2234 92 40 10 chr12 33298830 33299155 -110487300 - AluSp SINE Alu 0 313 1 296 340 57 14 chr12 33299461 33299602 -110486853 + MIR3 SINE MIR 1 147 -61 1760 157 39 20 chr12 33300647 33300953 -110485502 + AluJo SINE Alu 1 312 0 311 304 43 68 chr12 33301013 33301116 -110485339 - L1ME4a LINE L1 -244 5877 5773 2060 157 3 0 chr12 33301116 33301421 -110485034 + AluSg SINE Alu 1 306 -4 311 304 43 68 chr12 33301421 33301669 -110484786 - L1ME4a LINE L1 -348 5773 5535 1014 181 6 0 chr12 33301733 33301904 -110484551 + FRAM SINE Alu 5 176 0 271 290 0 0 chr12 33301914 33302007 -110484448 - L1P5 LINE L1 -705 5451 5359 395 309 41 52 chr12 33302155 33302349 -110484106 + MIR SINE MIR 1 192 -70 1388 172 27 23 chr12 33303183 33303445 -110483010 + AluSx SINE Alu 49 311 -1 213 226 38 0 chr12 33303848 33303901 -110482554 + MIR SINE MIR 21 75 -133 357 285 106 26 chr12 33305276 33305429 -110481026 + MIR SINE MIR 4 170 -62 213 217 0 22 chr12 33305502 33305548 -110480907 + GA-rich Low_complexity Low_complexity 3 47 0 588 261 118 10 chr12 33307055 33307258 -110479197 + MIR SINE MIR 36 260 -2 456 319 75 31 chr12 33307196 33307422 -110479033 - MIR SINE MIR -11 251 16 * 495 283 120 5 chr12 33307978 33308169 -110478286 - MIR SINE MIR -49 213 1 236 213 0 0 chr12 33308181 33308228 -110478227 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2009 103 68 4 chr12 33308988 33309269 -110477186 + AluSq SINE Alu 1 299 -14 257 294 24 12 chr12 33309340 33309425 -110477030 + LTR39 LTR ERV1 698 783 0 1558 165 24 0 chr12 33310294 33310542 -110475913 - AluJo SINE Alu -22 290 37 2479 70 3 0 chr12 33310627 33310929 -110475526 + AluSp SINE Alu 2 304 -9 355 303 8 8 chr12 33311604 33311736 -110474719 + MER70-int LTR ERVL 4535 4666 -357 281 280 18 110 chr12 33311835 33312117 -110474338 + LTR39-int LTR ERV1 7809 8064 -56 258 132 0 0 chr12 33312085 33312123 -110474332 + LTR39-int LTR ERV1 8312 8349 -50 * 3866 139 81 21 chr12 33312168 33312895 -110473560 + LTR39 LTR ERV1 1 771 -12 729 292 74 108 chr12 33312917 33313085 -110473370 - L2 LINE L2 -528 2786 2614 1914 171 0 3 chr12 33313085 33313377 -110473078 + AluJo SINE Alu 1 291 -21 729 292 74 108 chr12 33313377 33313886 -110472569 - L2 LINE L2 -700 2614 2132 1835 182 0 16 chr12 33314085 33314392 -110472063 + AluJo SINE Alu 1 302 -10 2207 105 0 0 chr12 33314400 33314686 -110471769 - AluSx SINE Alu -26 286 1 26 50 0 0 chr12 33314756 33314796 -110471659 + AT_rich Low_complexity Low_complexity 1 40 0 414 187 18 134 chr12 33315701 33315773 -110470682 - MER105 DNA DNA -20 184 142 2319 124 0 0 chr12 33315773 33316079 -110470376 + AluSx SINE Alu 1 306 -6 414 187 18 134 chr12 33316079 33316177 -110470278 - MER105 DNA DNA -62 142 34 2004 285 49 38 chr12 33316430 33317223 -110469232 - HERV16 LTR ERVL -3571 1425 624 2321 107 3 0 chr12 33318297 33318597 -110467858 + AluSg SINE Alu 1 301 -9 890 306 77 50 chr12 33319772 33320475 -110465980 - HERV16 LTR ERVL -4274 722 1 853 307 76 22 chr12 33320475 33320885 -110465570 - LTR16A LTR ERVL 0 450 19 2056 121 36 19 chr12 33321004 33321162 -110465293 - Tigger2 DNA MER2_type -75 2643 2489 2354 95 23 0 chr12 33321162 33321466 -110464989 + AluSx SINE Alu 2 312 0 2056 121 36 19 chr12 33321466 33321672 -110464783 - Tigger2 DNA MER2_type -229 2489 2273 1294 173 14 0 chr12 33321681 33321895 -110464560 + AluJb SINE Alu 86 302 -10 378 146 0 0 chr12 33321896 33321951 -110464504 - Tigger2 DNA MER2_type -2663 55 1 231 39 20 59 chr12 33322445 33322496 -110463959 + (TTTTTA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr12 33323378 33323419 -110463036 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 33325273 33325299 -110461156 + AT_rich Low_complexity Low_complexity 1 26 0 1257 204 5 5 chr12 33325370 33325591 -110460864 + AluJb SINE Alu 36 256 -56 454 276 109 68 chr12 33325609 33325882 -110460573 + L1ME4a LINE L1 2938 3198 -2948 378 0 0 0 chr12 33325882 33325924 -110460531 + (CA)n Simple_repeat Simple_repeat 2 43 0 454 276 109 68 chr12 33325924 33326214 -110460241 + L1ME4a LINE L1 3198 3580 -2566 549 68 0 0 chr12 33326522 33326596 -110459859 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 1171 84 11 6 chr12 33326607 33326785 -110459670 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1292 138 15 15 chr12 33326794 33326989 -110459466 - AluJb SINE Alu -32 280 86 700 314 115 33 chr12 33327004 33327252 -110459203 + L1ME4a LINE L1 4710 4936 -1185 1025 207 6 0 chr12 33327252 33327426 -110459029 + FAM SINE Alu 1 175 0 700 314 115 33 chr12 33327426 33327919 -110458536 + L1ME4a LINE L1 4936 5536 -585 1567 149 126 0 chr12 33327919 33328180 -110458275 - AluJo SINE Alu -2 310 17 700 314 115 33 chr12 33328180 33328280 -110458175 + L1ME4a LINE L1 5536 5626 -495 1324 225 149 34 chr12 33328288 33328725 -110457730 - MLT1F1 LTR MaLR 0 567 71 449 276 53 0 chr12 33328821 33328973 -110457482 + L1ME4a LINE L1 5636 5795 -326 333 303 45 0 chr12 33329028 33329206 -110457249 + L1ME4a LINE L1 5934 6119 -2 1884 173 3 3 chr12 33329416 33329717 -110456738 + AluSx SINE Alu 1 301 -11 2094 98 33 0 chr12 33330458 33330760 -110455695 - AluSq SINE Alu 0 311 1 439 240 6 22 chr12 33331182 33331322 -110455133 + MLT1H LTR MaLR 1 159 -265 869 164 60 22 chr12 33331476 33331659 -110454796 - AluJo SINE Alu 0 312 123 364 197 14 0 chr12 33331870 33331941 -110454514 + L2 LINE L2 3242 3313 0 828 200 47 6 chr12 33332005 33332175 -110454280 + MLT2C1 LTR ERVL 1 177 -220 1780 194 0 0 chr12 33332223 33332511 -110453944 + AluJo SINE Alu 1 288 -24 397 262 95 55 chr12 33332523 33332870 -110453585 + L1MEc LINE L1 1949 2309 -4087 953 189 52 48 chr12 33332883 33333093 -110453362 + Charlie1a DNA MER1_type 76 289 -2472 2199 127 0 0 chr12 33333093 33333392 -110453063 + AluSx SINE Alu 1 299 -13 953 189 52 48 chr12 33333392 33333451 -110453004 + Charlie1a DNA MER1_type 289 346 -1109 2169 105 41 0 chr12 33333820 33334115 -110452340 + AluSp SINE Alu 1 307 -6 315 123 0 18 chr12 33334515 33334578 -110451877 + Alu SINE Alu 2 55 -253 1148 140 67 0 chr12 33334582 33334761 -110451694 + AluSg/x SINE Alu 108 298 -14 2105 120 0 23 chr12 33335409 33335709 -110450746 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr12 33335929 33335957 -110450498 + AT_rich Low_complexity Low_complexity 1 28 0 226 325 36 0 chr12 33336100 33336183 -110450272 - MIR SINE MIR -10 252 167 726 299 79 30 chr12 33336185 33336653 -110449802 - LTR16B LTR ERVL 0 464 10 399 227 31 10 chr12 33336656 33336753 -110449702 - MIR SINE MIR -90 172 74 2520 88 0 0 chr12 33336803 33337110 -110449345 - AluSq SINE Alu -6 307 1 399 283 178 31 chr12 33337208 33337399 -110449056 - L1ME4a LINE L1 -233 5888 5670 3960 153 32 68 chr12 33337405 33338242 -110448213 - L1MB7 LINE L1 -21 6163 5297 187 43 0 0 chr12 33338242 33338265 -110448190 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2160 107 7 0 chr12 33338265 33338545 -110447910 - AluSx SINE Alu -30 282 1 1921 142 7 20 chr12 33338545 33338847 -110447608 - AluSx SINE Alu -14 298 1 3960 153 32 68 chr12 33338847 33339008 -110447447 - L1MB7 LINE L1 -885 5299 5134 747 150 0 95 chr12 33339008 33339155 -110447300 - FLAM_C SINE Alu 0 133 1 3960 153 32 68 chr12 33339155 33339381 -110447074 - L1MB7 LINE L1 -1050 5134 4967 1895 151 0 33 chr12 33339455 33339760 -110446695 - AluJo SINE Alu -17 295 1 556 127 0 0 chr12 33340532 33340603 -110445852 + AluS SINE Alu 2 72 -240 2018 120 35 0 chr12 33341455 33341738 -110444717 + AluSx SINE Alu 1 293 -19 263 234 0 16 chr12 33341943 33342007 -110444448 - Charlie7 DNA MER1_type -2511 101 39 2084 88 51 0 chr12 33342802 33343076 -110443379 + AluSg SINE Alu 3 290 -20 711 195 0 0 chr12 33343235 33343353 -110443102 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr12 33343358 33343378 -110443077 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4934 28 0 0 chr12 33343713 33344284 -110442171 - L1P LINE L1 -1727 4419 3849 5200 40 0 0 chr12 33344284 33344866 -110441589 + L1PA4 LINE L1 5571 6152 -3 1633 122 78 11 chr12 33344889 33345159 -110441296 + L1PA16 LINE L1 5861 6148 -18 387 293 135 23 chr12 33345521 33345736 -110440719 - MIR SINE MIR -15 247 9 676 266 52 22 chr12 33345990 33346219 -110440236 + L1MC4a LINE L1 7190 7425 -383 1183 184 18 0 chr12 33346223 33346440 -110440015 + AluJo SINE Alu 87 307 -5 1036 242 144 35 chr12 33346446 33346926 -110439529 + L1MC4 LINE L1 7507 8038 -4 231 263 97 61 chr12 33347178 33347292 -110439163 - L2 LINE L2 -223 3049 2932 590 274 51 24 chr12 33347337 33347592 -110438863 + LTR33 LTR ERVL 258 519 -2 297 228 96 96 chr12 33347652 33347819 -110438636 - L2 LINE L2 -1211 2103 1937 2246 118 0 3 chr12 33347936 33348249 -110438206 + AluSx SINE Alu 1 312 0 2428 89 3 0 chr12 33348406 33348708 -110437747 + AluSq SINE Alu 1 303 -10 2007 139 3 13 chr12 33349642 33349945 -110436510 - AluSx SINE Alu -12 300 1 298 232 11 74 chr12 33350059 33350154 -110436301 + MLT1E LTR MaLR 8 96 -497 738 214 168 85 chr12 33350229 33350521 -110435934 + MLT1E LTR MaLR 283 594 -1 1725 77 23 0 chr12 33352947 33353167 -110433288 + AluSq SINE Alu 69 293 -20 28 0 0 0 chr12 33353757 33353785 -110432670 + AT_rich Low_complexity Low_complexity 1 28 0 2281 114 0 0 chr12 33353855 33354153 -110432302 + AluSx SINE Alu 1 298 -14 333 0 0 0 chr12 33354390 33354427 -110432028 + (CA)n Simple_repeat Simple_repeat 2 38 0 1506 260 110 68 chr12 33354611 33355640 -110430815 - L1ME LINE L1 -534 5630 4645 2151 113 0 0 chr12 33355640 33355922 -110430533 + AluSx SINE Alu 1 282 -30 1506 260 110 68 chr12 33355922 33355949 -110430506 - L1ME LINE L1 -1519 4645 4621 348 24 0 0 chr12 33355949 33355990 -110430465 + (CA)n Simple_repeat Simple_repeat 2 42 0 1506 260 110 68 chr12 33355990 33356228 -110430227 - L1ME LINE L1 -1543 4621 4394 2047 151 3 0 chr12 33356228 33356526 -110429929 + AluSx SINE Alu 1 299 -13 1506 260 110 68 chr12 33356526 33356914 -110429541 - L1ME LINE L1 -1770 4394 3865 2268 92 7 7 chr12 33356914 33357219 -110429236 + AluSq SINE Alu 1 305 -8 1506 260 110 68 chr12 33357219 33357320 -110429135 - L1ME LINE L1 -2299 3865 3770 700 285 7 0 chr12 33357443 33357615 -110428840 - FRAM SINE Alu 0 173 1 381 303 58 33 chr12 33357644 33357918 -110428537 - L1ME LINE L1 -2693 3453 3173 26 0 0 0 chr12 33357975 33358001 -110428454 + AT_rich Low_complexity Low_complexity 1 26 0 3650 187 81 52 chr12 33358501 33359980 -110426475 + L1MDa LINE L1 33 1783 -4757 1773 136 3 45 chr12 33360337 33360645 -110425810 - AluJo SINE Alu 0 312 18 1457 147 127 12 chr12 33360667 33360952 -110425503 - AluSg SINE Alu 0 310 1 2286 113 3 0 chr12 33361243 33361553 -110424902 - AluSp SINE Alu -2 311 1 302 269 92 31 chr12 33361849 33361979 -110424476 - MIR SINE MIR -105 157 20 2263 91 0 31 chr12 33362016 33362334 -110424121 + AluSx SINE Alu 1 308 -4 1911 167 10 3 chr12 33362753 33363059 -110423396 + AluSx SINE Alu 1 308 -4 246 259 62 12 chr12 33363183 33363264 -110423191 + MIR SINE MIR 65 149 -113 707 224 52 84 chr12 33363466 33363774 -110422681 + MER46C DNA MER2_type 2 299 -39 24 0 0 0 chr12 33364482 33364506 -110421949 + AT_rich Low_complexity Low_complexity 1 24 0 259 319 0 0 chr12 33364855 33364946 -110421509 - MIR SINE MIR -102 160 70 333 304 223 0 chr12 33365253 33365401 -110421054 - MIR SINE MIR -42 220 40 2165 125 0 7 chr12 33366122 33366419 -110420036 + AluSq SINE Alu 1 295 -18 811 149 0 0 chr12 33366438 33366552 -110419903 + FLAM_C SINE Alu 6 119 -24 37 39 0 0 chr12 33366552 33366603 -110419852 + AT_rich Low_complexity Low_complexity 1 51 0 2049 125 0 0 chr12 33366721 33367000 -110419455 - AluJb SINE Alu -33 279 1 1497 172 56 8 chr12 33367121 33367414 -110419041 + AluJb SINE Alu 1 306 0 1139 189 0 0 chr12 33367423 33367598 -110418857 + FAM SINE Alu 1 175 0 24 0 0 0 chr12 33367735 33367759 -110418696 + AT_rich Low_complexity Low_complexity 1 24 0 1321 161 5 22 chr12 33367771 33367994 -110418461 - AluJb SINE Alu -93 219 1 2419 85 0 7 chr12 33368002 33368307 -110418148 - AluSc SINE Alu -6 303 1 2391 78 0 0 chr12 33369855 33370150 -110416305 - AluY SINE Alu -16 295 1 1949 165 64 3 chr12 33370268 33370596 -110415859 - MER7A DNA MER2_type 0 346 1 593 134 35 0 chr12 33372782 33372924 -110413531 + L1MB7 LINE L1 6055 6177 -7 507 325 46 52 chr12 33373027 33373372 -110413083 - LTR59 LTR ERV1 -12 585 243 699 221 24 0 chr12 33374017 33374144 -110412311 - FLAM_C SINE Alu -12 131 2 471 202 43 0 chr12 33374251 33374345 -110412110 + U13 snRNA snRNA 1 98 -6 370 267 19 19 chr12 33374427 33374532 -110411923 - HERV9 LTR ERV1 -500 4454 4350 924 129 0 7 chr12 33374533 33374672 -110411783 + AluJb SINE Alu 163 300 -12 383 242 39 84 chr12 33375642 33375820 -110410635 - HERV9 LTR ERV1 -1779 2868 2699 2398 89 3 0 chr12 33376231 33376533 -110409922 - AluSx SINE Alu -9 303 1 250 209 45 15 chr12 33377517 33377584 -110408871 - HERV9 LTR ERV1 -3158 4598 4530 286 146 0 0 chr12 33377640 33377681 -110408774 + AluJb SINE Alu 1 41 -267 299 311 33 11 chr12 33377700 33377790 -110408665 - HERV9 LTR ERV1 -4161 2640 2549 1600 142 4 0 chr12 33377855 33378094 -110408361 + AluJb SINE Alu 48 287 -25 1716 145 41 4 chr12 33378505 33378774 -110407681 - AluSx SINE Alu -33 279 1 497 294 33 13 chr12 33379213 33379366 -110407089 - HERV9 LTR ERV1 -4147 500 345 2308 123 0 0 chr12 33379380 33379688 -110406767 + AluSx SINE Alu 1 308 -4 279 227 49 98 chr12 33379696 33379859 -110406596 - HERV9 LTR ERV1 -4949 3450 3296 2302 86 7 7 chr12 33380199 33380501 -110405954 - AluSp SINE Alu -11 302 1 1915 107 15 0 chr12 33381405 33381667 -110404788 - AluSg SINE Alu -10 300 35 343 255 0 2 chr12 33382371 33382459 -110403996 - L1MC4 LINE L1 -490 7318 7233 940 245 137 35 chr12 33382564 33382891 -110403564 - L1ME3A LINE L1 -110 6060 5768 210 37 0 0 chr12 33382891 33382918 -110403537 + (TG)n Simple_repeat Simple_repeat 2 28 0 940 245 137 35 chr12 33382918 33383562 -110402893 - L1ME3A LINE L1 -402 5768 5191 2292 69 7 14 chr12 33383562 33383851 -110402604 - AluSq SINE Alu -16 297 11 940 245 137 35 chr12 33383851 33384128 -110402327 - L1ME3A LINE L1 -979 5191 4595 2359 61 0 20 chr12 33384170 33384489 -110401966 - AluSq SINE Alu 0 313 1 2309 71 3 7 chr12 33384778 33385074 -110401381 + AluY SINE Alu 1 295 -16 351 310 139 31 chr12 33385590 33385927 -110400528 - LTR34 LTR ERV1 -64 584 228 2108 123 0 13 chr12 33386418 33386728 -110399727 + AluSq SINE Alu 1 306 -7 181 195 0 24 chr12 33388223 33388264 -110398191 - MIR SINE MIR -142 120 81 232 224 30 0 chr12 33389722 33389781 -110396674 + MIR SINE MIR 88 151 -111 2114 98 11 3 chr12 33389781 33390066 -110396389 + AluSq SINE Alu 1 287 -26 27 87 0 0 chr12 33394696 33394765 -110391690 + GC_rich Low_complexity Low_complexity 1 69 0 22 35 0 0 chr12 33395141 33395170 -110391285 + GC_rich Low_complexity Low_complexity 1 29 0 1334 101 10 15 chr12 33398086 33398285 -110388170 + AluSg/x SINE Alu 114 311 -1 281 321 12 24 chr12 33398303 33398387 -110388068 + L2 LINE L2 3144 3226 -46 714 203 0 0 chr12 33398459 33398592 -110387863 + AluJo SINE Alu 1 133 -169 1616 108 24 138 chr12 33398595 33398936 -110387519 + AluYb8 SINE Alu 2 303 -5 197 33 33 0 chr12 33398936 33398966 -110387489 + (TA)n Simple_repeat Simple_repeat 1 31 0 721 261 0 7 chr12 33398971 33399124 -110387331 + AluJo SINE Alu 137 288 -14 2088 112 3 7 chr12 33399134 33399440 -110387015 + AluSp SINE Alu 1 305 0 29 0 0 0 chr12 33399440 33399469 -110386986 + AT_rich Low_complexity Low_complexity 1 29 0 2384 103 0 3 chr12 33399804 33400114 -110386341 + AluSg SINE Alu 1 309 -1 2424 84 0 7 chr12 33400257 33400553 -110385902 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr12 33400758 33400791 -110385664 + AT_rich Low_complexity Low_complexity 1 33 0 2220 92 3 3 chr12 33401124 33401440 -110385015 - AluSp SINE Alu 0 316 1 206 240 20 0 chr12 33401569 33401619 -110384836 - L2 LINE L2 -1 3271 3221 2191 92 0 24 chr12 33402306 33402635 -110383820 - AluSq SINE Alu 0 322 1 308 293 162 20 chr12 33402683 33402881 -110383574 + L3 LINE CR1 1099 1324 -253 194 167 0 0 chr12 33403256 33403292 -110383163 - L2 LINE L2 -254 3059 3024 939 207 6 0 chr12 33403672 33403907 -110382548 + FRAM SINE Alu 1 236 0 1943 153 0 10 chr12 33404120 33404414 -110382041 - AluSx SINE Alu -21 291 1 293 304 223 0 chr12 33405135 33405283 -110381172 + MIR SINE MIR 40 220 -42 235 319 0 0 chr12 33405590 33405681 -110380774 + MIR SINE MIR 70 160 -102 24 0 0 0 chr12 33406030 33406054 -110380401 + AT_rich Low_complexity Low_complexity 1 24 0 690 224 52 84 chr12 33406762 33407070 -110379385 - MER46C DNA MER2_type -39 299 2 221 259 62 12 chr12 33407272 33407353 -110379102 - MIR SINE MIR -113 149 65 1921 167 10 3 chr12 33407477 33407783 -110378672 - AluSx SINE Alu -4 308 1 2284 91 0 31 chr12 33408202 33408520 -110377935 - AluSx SINE Alu -4 308 1 261 269 92 31 chr12 33408557 33408687 -110377768 + MIR SINE MIR 20 157 -105 2302 113 3 0 chr12 33408983 33409293 -110377162 + AluSp SINE Alu 1 311 -2 1471 147 127 12 chr12 33409584 33409869 -110376586 + AluSg SINE Alu 1 310 0 1787 136 3 45 chr12 33409890 33410198 -110376257 + AluJo SINE Alu 18 312 0 2600 175 88 31 chr12 33410555 33411269 -110375186 - L1MDa LINE L1 -4757 1783 1029 1517 172 56 8 chr12 33411493 33411786 -110374669 + AluJb SINE Alu 1 306 0 1074 189 0 0 chr12 33411795 33411970 -110374485 + FAM SINE Alu 1 175 0 1051 190 9 32 chr12 33412148 33412364 -110374091 - AluJb SINE Alu -101 211 1 2352 95 0 7 chr12 33412372 33412677 -110373778 - AluSc SINE Alu -6 303 1 2072 125 0 0 chr12 33413401 33413680 -110372775 + AluJb SINE Alu 1 279 -33 36 0 0 0 chr12 33413813 33413849 -110372606 + AT_rich Low_complexity Low_complexity 1 36 0 764 149 0 0 chr12 33413849 33413963 -110372492 - FLAM_C SINE Alu -24 119 6 21 0 0 0 chr12 33413967 33413988 -110372467 + AT_rich Low_complexity Low_complexity 1 21 0 2170 101 3 0 chr12 33413988 33414275 -110372180 - AluSx SINE Alu -24 288 1 978 158 10 41 chr12 33414481 33414677 -110371778 - AluSg/x SINE Alu -2 308 119 297 266 13 13 chr12 33414962 33415041 -110371414 + Alu SINE Alu 216 294 -6 * 699 179 76 107 chr12 33415037 33415261 -110371194 + MLT2C1 LTR ERVL 181 397 0 2184 125 0 10 chr12 33415274 33415578 -110370877 - AluSx SINE Alu -9 303 3 1984 122 19 22 chr12 33415590 33415901 -110370554 - AluSx SINE Alu -2 310 1 1110 185 14 31 chr12 33415965 33416249 -110370206 + MLT1A1 LTR MaLR 2 365 0 1742 135 12 0 chr12 33416334 33416614 -110369841 - AluSx SINE Alu 0 321 39 506 161 46 0 chr12 33416892 33416979 -110369476 + AluJo SINE Alu 49 139 -173 2235 115 3 0 chr12 33416983 33417287 -110369168 + AluSq SINE Alu 1 305 -8 320 319 80 45 chr12 33417548 33417981 -110368474 + L2 LINE L2 2636 3096 -176 2332 89 7 0 chr12 33417984 33418286 -110368169 - AluSq SINE Alu -9 304 1 2171 102 7 7 chr12 33418308 33418602 -110367853 - AluSg SINE Alu -16 294 1 1351 186 46 21 chr12 33418686 33418966 -110367489 - AluJo SINE Alu -25 287 1 25 51 0 0 chr12 33419022 33419061 -110367394 + AT_rich Low_complexity Low_complexity 1 39 0 2145 108 3 0 chr12 33419269 33419556 -110366899 - AluSx SINE Alu -24 288 1 201 171 0 0 chr12 33420004 33420039 -110366416 + A-rich Low_complexity Low_complexity 2 36 0 1587 159 0 44 chr12 33420073 33420392 -110366063 + AluJb SINE Alu 1 306 0 181 180 40 0 chr12 33420528 33420578 -110365877 + (TA)n Simple_repeat Simple_repeat 2 53 0 1955 143 6 25 chr12 33420631 33420945 -110365510 - AluJb SINE Alu -4 308 1 2400 87 3 0 chr12 33420955 33421253 -110365202 - AluSp SINE Alu -14 299 1 2409 92 7 10 chr12 33421555 33421861 -110364594 + AluSx SINE Alu 1 305 -7 257 217 67 0 chr12 33422091 33422151 -110364304 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 33422153 33422466 -110363989 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 33422549 33422693 -110363762 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 33422841 33422958 -110363497 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 33423070 33423366 -110363089 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 33423367 33423478 -110362977 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 33423478 33423793 -110362662 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 33423793 33423906 -110362549 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 33423906 33424013 -110362442 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 33424013 33424292 -110362163 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 33424292 33424602 -110361853 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 33424608 33424902 -110361553 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 33424902 33424982 -110361473 + LTR41 LTR ERVL 763 795 0 524 233 5 101 chr12 33424989 33425121 -110361334 + L2 LINE L2 2260 2370 -944 2352 105 0 6 chr12 33425121 33425435 -110361020 - AluSx SINE Alu 0 312 1 524 233 5 101 chr12 33425435 33425491 -110360964 + L2 LINE L2 2370 2430 -884 2090 144 3 0 chr12 33425569 33425875 -110360580 - AluSx SINE Alu -5 307 1 2185 92 7 0 chr12 33425889 33426162 -110360293 - AluSx SINE Alu -17 295 21 314 208 68 117 chr12 33426162 33426426 -110360029 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33427215 33427236 -110359219 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33427798 33427819 -110358636 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33428322 33428514 -110357941 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33428514 33428642 -110357813 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33428642 33428976 -110357479 + MARNA DNA Mariner 195 565 -21 2096 104 3 44 chr12 33429086 33429403 -110357052 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33429609 33429724 -110356731 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33430004 33430299 -110356156 - AluY SINE Alu -4 307 1 198 0 0 0 chr12 33432550 33432572 -110353883 + (T)n Simple_repeat Simple_repeat 1 22 0 363 265 53 63 chr12 33433243 33433432 -110353023 + MIR SINE MIR 2 188 -74 576 192 0 0 chr12 33433445 33433544 -110352911 + AluSg/x SINE Alu 206 304 -5 852 178 33 93 chr12 33434529 33434679 -110351776 + MER3 DNA MER1_type 9 144 -65 2252 102 10 0 chr12 33434679 33434974 -110351481 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33434974 33435037 -110351418 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33434983 33435044 -110351411 - MER3 DNA MER1_type -108 101 41 * 739 263 90 47 chr12 33435047 33435064 -110351391 + L2 LINE L2 2694 2709 -604 1862 138 28 0 chr12 33435064 33435355 -110351100 + AluSx SINE Alu 1 299 -13 739 263 90 47 chr12 33435355 33435943 -110350512 + L2 LINE L2 2709 3312 -1 1045 133 0 48 chr12 33435988 33436153 -110350302 - AluJb SINE Alu -25 287 131 25 0 0 0 chr12 33436153 33436178 -110350277 + AT_rich Low_complexity Low_complexity 1 25 0 2391 106 0 0 chr12 33436182 33436483 -110349972 + AluSg SINE Alu 2 302 -8 275 272 39 19 chr12 33437219 33437322 -110349133 + MIR SINE MIR 47 151 -111 2257 103 0 7 chr12 33438011 33438312 -110348143 - AluSx SINE Alu -13 299 1 798 202 29 63 chr12 33438808 33438938 -110347517 - L1ME1 LINE L1 -24 6142 6022 2486 61 3 0 chr12 33438938 33439234 -110347221 - AluY SINE Alu -14 297 1 798 202 29 63 chr12 33439234 33439341 -110347114 - L1ME1 LINE L1 -144 6022 5913 1202 206 92 14 chr12 33439342 33439634 -110346821 - L1ME1 LINE L1 -383 5783 5469 1943 124 4 0 chr12 33439634 33439907 -110346548 + AluSq SINE Alu 1 274 -39 242 0 61 0 chr12 33439914 33439947 -110346508 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 664 210 65 84 chr12 33440165 33440381 -110346074 - MLT1D LTR MaLR -10 495 284 1832 105 0 34 chr12 33440379 33440646 -110345809 - AluSx SINE Alu -9 303 46 180 0 0 0 chr12 33440664 33440684 -110345771 + (TTG)n Simple_repeat Simple_repeat 2 21 0 741 90 0 45 chr12 33440712 33440823 -110345632 + U6 snRNA snRNA 2 107 0 1601 148 4 19 chr12 33440958 33441215 -110345240 - AluSx SINE Alu -31 281 29 557 250 65 24 chr12 33441215 33441383 -110345072 - MLT1D LTR MaLR -328 177 3 2140 114 0 3 chr12 33441588 33441894 -110344561 + AluSg SINE Alu 1 305 -5 1730 172 7 0 chr12 33441965 33442256 -110344199 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 33442704 33442725 -110343730 + AT_rich Low_complexity Low_complexity 1 21 0 1162 164 16 0 chr12 33442740 33442923 -110343532 - AluJo SINE Alu -126 186 1 473 292 37 35 chr12 33443441 33443636 -110342819 - MIR SINE MIR -33 229 36 194 0 39 0 chr12 33444125 33444151 -110342304 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1767 128 0 55 chr12 33444153 33444481 -110341974 - AluSx SINE Alu -2 310 1 289 204 0 0 chr12 33444487 33444541 -110341914 - L1M4 LINE L1 -3426 2720 2667 2128 95 7 3 chr12 33444550 33444846 -110341609 - AluSc SINE Alu -12 297 1 1635 164 10 7 chr12 33444967 33445271 -110341184 + AluJb SINE Alu 1 305 -7 22 70 0 0 chr12 33445349 33445392 -110341063 + AT_rich Low_complexity Low_complexity 1 43 0 1452 158 122 0 chr12 33445454 33445708 -110340747 - AluJb SINE Alu -15 287 3 893 111 95 265 chr12 33445862 33446221 -110340234 + AluJo SINE Alu 2 299 -3 2439 65 0 3 chr12 33446221 33446528 -110339927 + AluY SINE Alu 1 306 -5 515 78 0 0 chr12 33446720 33446784 -110339671 - AluJ SINE Alu -144 168 105 1912 111 9 49 chr12 33447416 33447740 -110338715 - AluJb SINE Alu -1 311 1 737 145 8 8 chr12 33447967 33448084 -110338371 - AluJ SINE Alu -194 118 2 452 152 0 0 chr12 33448084 33448150 -110338305 + MLT1C LTR MaLR 402 467 0 987 126 46 23 chr12 33448435 33448610 -110337845 + AluSp SINE Alu 122 300 -13 2284 106 3 0 chr12 33448838 33449150 -110337305 + AluSq SINE Alu 1 313 0 1621 186 0 31 chr12 33449265 33449583 -110336872 - AluJb SINE Alu -4 308 1 1932 158 0 0 chr12 33449592 33449890 -110336565 - AluSx SINE Alu -14 298 1 1801 148 3 13 chr12 33450193 33450491 -110335964 - AluSg SINE Alu -15 295 1 683 169 0 8 chr12 33450653 33450771 -110335684 + FLAM_C SINE Alu 2 118 -25 1112 132 0 0 chr12 33451015 33451182 -110335273 + AluSg/x SINE Alu 143 309 -1 1957 137 7 0 chr12 33451189 33451482 -110334973 + AluSx SINE Alu 1 295 -17 2125 126 0 0 chr12 33451485 33451795 -110334660 + AluSx SINE Alu 1 310 -2 1027 90 0 0 chr12 33451888 33452021 -110334434 + AluSg SINE Alu 2 134 -176 1969 85 7 41 chr12 33452022 33452163 -110334292 + AluSg SINE Alu 1 128 -182 2254 73 0 35 chr12 33452163 33452479 -110333976 + AluY SINE Alu 1 305 -6 1969 85 7 41 chr12 33452479 33452630 -110333825 + AluSg SINE Alu 128 283 -27 2158 101 0 0 chr12 33452968 33453265 -110333190 - AluSx SINE Alu -14 298 2 440 304 30 0 chr12 33453349 33453484 -110332971 - MIR SINE MIR -56 206 68 2099 108 6 19 chr12 33455056 33455371 -110331084 + AluSx SINE Alu 1 311 -1 2115 95 7 3 chr12 33457350 33457646 -110328809 + AluSx SINE Alu 1 297 -15 1514 92 60 0 chr12 33458163 33458380 -110328075 + AluSq SINE Alu 67 296 -17 280 140 60 0 chr12 33458498 33458548 -110327907 + Alu SINE Alu 241 293 -9 870 174 7 0 chr12 33458760 33458976 -110327479 - FRAM SINE Alu 0 236 20 434 355 145 17 chr12 33459564 33459984 -110326471 - L3 LINE CR1 -5 1572 1099 2069 92 0 24 chr12 33460032 33460361 -110326094 + AluSq SINE Alu 1 322 0 227 240 20 0 chr12 33461049 33461099 -110325356 + L2 LINE L2 3221 3271 -1 297 335 149 21 chr12 33461216 33461228 -110325227 - MIR SINE MIR 0 262 253 2193 96 3 3 chr12 33461228 33461531 -110324924 + AluSp SINE Alu 1 303 -10 297 335 149 21 chr12 33461531 33461706 -110324749 - MIR SINE MIR -9 253 51 200 180 60 0 chr12 33462570 33462620 -110323835 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1548 260 72 32 chr12 33463032 33463565 -110322890 - MLT1F1 LTR MaLR -1 566 1 2057 105 0 40 chr12 33463845 33464170 -110322285 + AluSx SINE Alu 1 312 0 381 170 53 53 chr12 33464351 33464445 -110322010 + L2 LINE L2 3173 3266 -47 400 284 123 49 chr12 33464450 33464693 -110321762 - L2 LINE L2 -840 2474 2214 2250 93 0 0 chr12 33465020 33465321 -110321134 - AluSg SINE Alu -9 301 1 25 0 0 0 chr12 33465321 33465346 -110321109 + AT_rich Low_complexity Low_complexity 1 25 0 538 123 0 0 chr12 33465461 33465534 -110320921 - AluSp SINE Alu -112 201 129 2109 99 0 3 chr12 33465540 33465850 -110320605 - AluSx SINE Alu 0 309 1 318 228 63 70 chr12 33465876 33466102 -110320353 + MER34B LTR ERV1 362 734 -53 2160 110 3 3 chr12 33466143 33466451 -110320004 + AluSx SINE Alu 1 308 -4 486 282 46 36 chr12 33467349 33467555 -110318900 - MIR SINE MIR -19 243 36 194 0 39 0 chr12 33468044 33468070 -110318385 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2163 107 0 22 chr12 33468072 33468390 -110318065 - AluSq SINE Alu -2 311 1 1882 100 52 0 chr12 33468409 33468680 -110317775 - AluSx SINE Alu -14 298 14 1483 215 26 0 chr12 33469029 33469331 -110317124 - AluJb SINE Alu -2 310 1 2278 97 3 0 chr12 33469340 33469648 -110316807 - AluSp SINE Alu -3 310 2 1706 291 107 54 chr12 33469650 33470722 -110315733 + L2 LINE L2 1929 3090 -223 818 163 0 0 chr12 33470722 33470851 -110315604 + FLAM_C SINE Alu 2 130 -3 1706 291 107 54 chr12 33470851 33471088 -110315367 + L2 LINE L2 3090 3313 0 2213 102 99 9 chr12 33471165 33471507 -110314948 + THE1C LTR MaLR 3 375 0 2243 103 0 0 chr12 33471578 33471880 -110314575 - AluSc SINE Alu -1 308 7 322 289 104 96 chr12 33472177 33472571 -110313884 - MLT1K LTR MaLR -10 578 182 1732 176 7 3 chr12 33472751 33473058 -110313397 + AluJb SINE Alu 1 308 -4 1074 140 0 0 chr12 33473225 33473396 -110313059 + AluSg/x SINE Alu 135 305 -5 2074 96 4 0 chr12 33473398 33473704 -110312751 + AluSg SINE Alu 1 307 0 1639 171 0 16 chr12 33474739 33475044 -110311411 + AluJo SINE Alu 1 300 -12 2131 92 3 0 chr12 33475203 33475496 -110310959 + AluSg SINE Alu 1 294 -16 353 303 33 25 chr12 33475951 33476073 -110310382 + MIR SINE MIR 67 189 -73 331 61 82 0 chr12 33476094 33476143 -110310312 - MADE1 DNA Mariner -27 53 1 689 256 18 0 chr12 33476200 33476368 -110310087 + FAM SINE Alu 1 171 -4 2276 70 3 0 chr12 33476520 33476845 -110309610 + AluSp SINE Alu 1 326 0 2035 127 10 0 chr12 33476904 33477203 -110309252 - AluSx SINE Alu -10 302 1 544 198 18 90 chr12 33477203 33477370 -110309085 - MER58B DNA MER1_type -6 335 181 1761 158 3 0 chr12 33477370 33477662 -110308793 - AluJb SINE Alu -19 293 1 1446 191 31 0 chr12 33477663 33477951 -110308504 - AluJb SINE Alu -15 297 1 378 244 71 0 chr12 33477981 33478108 -110308347 - L1ME4a LINE L1 -265 5856 5721 2159 96 0 0 chr12 33478143 33478434 -110308021 - AluSg SINE Alu -19 291 1 183 80 0 0 chr12 33478464 33478489 -110307966 + (A)n Simple_repeat Simple_repeat 1 25 0 1246 125 5 34 chr12 33478592 33478770 -110307685 - AluSg/x SINE Alu 0 308 136 210 37 0 0 chr12 33478780 33478807 -110307648 + (TG)n Simple_repeat Simple_repeat 2 28 0 2208 91 10 3 chr12 33478807 33479104 -110307351 - AluSg SINE Alu -8 302 1 1246 125 5 34 chr12 33479104 33479154 -110307301 - AluSg/x SINE Alu -172 136 86 2128 71 0 37 chr12 33479824 33480149 -110306306 - AluY SINE Alu 0 314 1 1958 85 53 7 chr12 33480346 33480629 -110305826 - AluSx SINE Alu -16 296 1 378 0 0 0 chr12 33481289 33481331 -110305124 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1584 156 0 35 chr12 33481338 33481626 -110304829 - AluJo SINE Alu -34 278 1 2132 110 0 7 chr12 33481662 33481971 -110304484 + AluSg1 SINE Alu 1 307 -2 1197 80 6 0 chr12 33481971 33482134 -110304321 + AluSp SINE Alu 134 297 -16 354 337 140 6 chr12 33482138 33482316 -110304139 - MIR SINE MIR -10 252 51 200 180 60 0 chr12 33483181 33483231 -110303224 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1565 260 71 31 chr12 33483643 33484176 -110302279 - MLT1F1 LTR MaLR -1 566 1 2057 105 0 40 chr12 33484456 33484781 -110301674 + AluSx SINE Alu 1 312 0 381 170 53 53 chr12 33484962 33485056 -110301399 + L2 LINE L2 3173 3266 -47 391 296 119 45 chr12 33485061 33485304 -110301151 - L2 LINE L2 -840 2474 2214 2063 110 3 0 chr12 33485631 33485931 -110300524 - AluSg SINE Alu -9 301 1 676 190 22 15 chr12 33485963 33486100 -110300355 - AluJb SINE Alu -39 273 136 2037 108 7 3 chr12 33486123 33486419 -110300036 + AluSq SINE Alu 1 297 -16 575 126 0 87 chr12 33486456 33486559 -110299896 + U6 snRNA snRNA 1 94 -13 828 182 0 0 chr12 33486560 33486703 -110299752 - AluSp/q SINE Alu -9 304 162 976 108 0 0 chr12 33487105 33487244 -110299211 - AluSq/x SINE Alu -174 139 1 2114 86 6 16 chr12 33487452 33487766 -110298689 - AluY SINE Alu 0 311 1 1908 153 0 0 chr12 33487767 33488061 -110298394 - AluJb SINE Alu -14 298 5 286 302 92 21 chr12 33488130 33488286 -110298169 - MER5A DNA MER1_type -5 184 8 214 329 61 59 chr12 33488477 33488700 -110297755 + MIR SINE MIR 28 250 -12 192 306 35 24 chr12 33488714 33488799 -110297656 - L2 LINE L2 -239 3033 2948 2169 104 3 0 chr12 33488852 33489151 -110297304 - AluSg1 SINE Alu -9 300 1 674 185 0 8 chr12 33489348 33489467 -110296988 - FLAM_C SINE Alu -25 118 1 846 150 80 71 chr12 33489518 33489632 -110296823 + AluJo SINE Alu 2 114 -198 1262 198 40 4 chr12 33489632 33489910 -110296545 + AluSc SINE Alu 3 290 -19 846 150 80 71 chr12 33489910 33490021 -110296434 + AluJo SINE Alu 114 229 -83 1335 116 20 15 chr12 33490431 33490629 -110295826 + AluSg/x SINE Alu 107 305 -5 1351 174 5 0 chr12 33490671 33490889 -110295566 + AluJo SINE Alu 84 302 -10 287 201 188 56 chr12 33490889 33490926 -110295529 - MLT1A1 LTR MaLR -32 333 302 2179 109 3 0 chr12 33490926 33491210 -110295245 + AluSq SINE Alu 1 284 -29 198 43 0 0 chr12 33491210 33491233 -110295222 + (CAAAA)n Simple_repeat Simple_repeat 3 175 0 287 201 188 56 chr12 33491233 33491337 -110295118 - MLT1A1 LTR MaLR -63 302 171 2332 105 3 0 chr12 33492074 33492380 -110294075 - AluSq SINE Alu -6 307 1 383 55 36 0 chr12 33493039 33493094 -110293361 - L1MA2 LINE L1 -6 6298 6242 1553 109 70 4 chr12 33493372 33493629 -110292826 - L1MA3 LINE L1 0 6305 6032 2419 73 7 0 chr12 33493639 33493942 -110292513 - AluSp SINE Alu -8 305 1 190 333 49 0 chr12 33493981 33494062 -110292393 - L2 LINE L2 -680 2634 2550 1839 155 30 10 chr12 33494429 33494725 -110291730 - AluJo SINE Alu -10 302 1 654 119 30 0 chr12 33494789 33494890 -110291565 + AluSg/x SINE Alu 198 301 -11 183 80 0 0 chr12 33496178 33496203 -110290252 + (T)n Simple_repeat Simple_repeat 1 25 0 1605 115 0 0 chr12 33496203 33496421 -110290034 + AluSg/x SINE Alu 91 308 -2 2303 99 20 3 chr12 33496422 33496725 -110289730 + AluSg SINE Alu 1 308 -2 1726 167 0 27 chr12 33496735 33497035 -110289420 + AluJb SINE Alu 1 292 -20 1398 176 9 108 chr12 33497093 33497277 -110289178 - AluJb SINE Alu 0 302 101 2023 130 0 0 chr12 33497277 33497554 -110288901 - AluSq SINE Alu -36 277 1 2424 87 0 0 chr12 33497560 33497860 -110288595 - AluSq SINE Alu -13 300 1 1398 176 9 108 chr12 33497860 33498003 -110288452 - AluJb SINE Alu -206 96 1 1804 157 0 7 chr12 33498022 33498308 -110288147 - AluJb SINE Alu -18 294 11 450 0 0 0 chr12 33498312 33498362 -110288093 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2052 134 0 0 chr12 33498362 33498646 -110287809 - AluSg SINE Alu -26 284 1 2181 108 3 3 chr12 33498650 33498946 -110287509 - AluSx SINE Alu -16 296 1 1933 130 11 3 chr12 33499616 33499900 -110286555 - AluSx SINE Alu -26 286 1 2324 71 0 0 chr12 33499916 33500229 -110286226 - AluSg SINE Alu 0 313 1 565 260 160 28 chr12 33500388 33500707 -110285748 + MLT1J LTR MaLR 151 511 0 1951 145 6 22 chr12 33500814 33501131 -110285324 + AluSx SINE Alu 1 312 0 2382 101 7 0 chr12 33501145 33501452 -110285003 + AluSx SINE Alu 1 309 -3 444 296 112 16 chr12 33501616 33501953 -110284502 - LTR16A LTR ERVL -6 444 24 2433 92 0 0 chr12 33502275 33502579 -110283876 - AluSq SINE Alu -9 304 1 817 164 8 0 chr12 33502608 33502736 -110283719 - FLAM_C SINE Alu -14 129 1 525 232 166 33 chr12 33502886 33503097 -110283358 + L1ME LINE L1 5446 5684 -437 609 290 50 27 chr12 33503098 33503188 -110283267 - MIR SINE MIR -17 245 159 1747 176 3 17 chr12 33503188 33503505 -110282950 - AluJo SINE Alu 0 312 1 609 290 50 27 chr12 33503505 33503635 -110282820 - MIR SINE MIR -103 159 20 2209 91 17 3 chr12 33503841 33504137 -110282318 - AluSp SINE Alu -13 300 1 2467 78 0 13 chr12 33504137 33504443 -110282012 - AluSc SINE Alu -7 302 1 1811 129 93 0 chr12 33504768 33505048 -110281407 - AluSx SINE Alu -6 306 1 2028 153 9 38 chr12 33505137 33505484 -110280971 - MER1B DNA MER1_type 0 337 1 1867 153 21 0 chr12 33505731 33506013 -110280442 - AluJb SINE Alu -20 292 5 551 169 0 0 chr12 33506907 33506996 -110279459 - FLAM_C SINE Alu -21 122 34 1820 149 9 41 chr12 33507338 33507451 -110279004 + AluJb SINE Alu 1 116 -196 1998 119 35 3 chr12 33507451 33507737 -110278718 + AluSg SINE Alu 1 295 -15 1820 149 9 41 chr12 33507737 33507938 -110278517 + AluJb SINE Alu 116 305 -7 1168 152 0 52 chr12 33508396 33508607 -110277848 - AluJo SINE Alu -31 281 82 2368 96 0 3 chr12 33508633 33508935 -110277520 - AluSp SINE Alu -10 303 3 2188 97 3 29 chr12 33509054 33509365 -110277090 - AluSx SINE Alu -9 303 1 2086 93 7 11 chr12 33509531 33509800 -110276655 + AluSx SINE Alu 38 305 -7 257 217 67 0 chr12 33510030 33510090 -110276365 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 33510092 33510405 -110276050 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 33510488 33510632 -110275823 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 33510780 33510897 -110275558 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 33511009 33511305 -110275150 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 33511306 33511417 -110275038 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 33511417 33511732 -110274723 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 33511732 33511845 -110274610 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 33511845 33511952 -110274503 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 33511952 33512231 -110274224 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 33512231 33512541 -110273914 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 33512547 33512841 -110273614 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 33512841 33512921 -110273534 + LTR41 LTR ERVL 763 795 0 361 237 8 92 chr12 33512928 33513059 -110273396 + L2 LINE L2 2260 2379 -935 2259 118 0 6 chr12 33513060 33513374 -110273081 - AluSx SINE Alu 0 312 1 599 91 23 0 chr12 33513426 33513514 -110272941 - AluSg/x SINE Alu -8 304 215 962 228 112 10 chr12 33513832 33514135 -110272320 - MER46C DNA MER2_type -3 335 2 2260 118 10 0 chr12 33515025 33515329 -110271126 + AluSq SINE Alu 1 307 -6 1960 149 13 7 chr12 33515329 33515637 -110270818 + AluSx SINE Alu 1 311 -1 256 344 42 0 chr12 33515758 33515854 -110270601 + L2 LINE L2 3173 3272 0 2155 103 0 23 chr12 33516016 33516316 -110270139 - AluSq SINE Alu -20 293 1 194 291 145 26 chr12 33516616 33516733 -110269722 + L2 LINE L2 2924 3054 -218 2059 126 3 16 chr12 33516901 33517211 -110269244 - AluSx SINE Alu -4 308 3 2138 117 10 0 chr12 33517723 33518014 -110268441 - AluSx SINE Alu -18 294 1 655 266 42 64 chr12 33518328 33518428 -110268027 + L1MEd LINE L1 1058 1159 -5237 2180 105 18 0 chr12 33518428 33518713 -110267742 + AluSc SINE Alu 1 290 -19 655 266 42 64 chr12 33518713 33518761 -110267694 + L1MEd LINE L1 1159 1207 -5189 2289 125 0 0 chr12 33518761 33519073 -110267382 + AluSx SINE Alu 1 312 0 655 266 42 64 chr12 33519073 33519458 -110266997 + L1MEd LINE L1 1207 1616 -4780 322 308 10 39 chr12 33519464 33519568 -110266887 + L1MEd LINE L1 1545 1645 -4751 1609 130 68 55 chr12 33519693 33519985 -110266470 + AluJo SINE Alu 1 296 -16 1795 168 3 3 chr12 33520321 33520606 -110265849 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33520606 33520628 -110265827 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 307 224 0 0 chr12 33520628 33520695 -110265760 + L1MEd LINE L1 2998 3064 -3151 412 275 56 33 chr12 33520730 33520874 -110265581 + L1MEd LINE L1 3151 3290 -2925 1792 177 0 16 chr12 33520874 33521185 -110265270 + AluJb SINE Alu 1 306 -6 412 275 56 33 chr12 33521185 33521400 -110265055 + L1MEd LINE L1 3290 3518 -2697 2124 127 10 0 chr12 33521403 33521710 -110264745 + AluSx SINE Alu 1 310 -2 648 231 99 58 chr12 33521727 33521969 -110264486 + MER21B LTR ERV1 329 580 -283 1686 144 133 32 chr12 33522023 33522303 -110264152 + MSTB1 LTR MaLR 51 374 -58 1860 159 7 3 chr12 33522303 33522461 -110263994 - AluJb SINE Alu -16 296 135 2350 89 10 0 chr12 33522461 33522763 -110263692 - AluSp SINE Alu -8 305 1 1860 159 7 3 chr12 33522763 33522899 -110263556 - AluJb SINE Alu -177 135 1 1686 144 133 32 chr12 33522899 33522965 -110263490 + MSTB1 LTR MaLR 374 432 0 465 242 174 6 chr12 33522978 33523139 -110263316 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33523144 33523543 -110262912 + MER21B-int LTR ERV1 18 427 -3764 470 229 17 8 chr12 33523551 33523669 -110262786 - MER21-int LTR ERV1 -3657 534 416 1216 153 83 31 chr12 33523669 33523898 -110262557 - AluSx SINE Alu -17 295 55 434 74 0 0 chr12 33523907 33523961 -110262494 - AluSq/x SINE Alu -194 119 66 4845 239 95 72 chr12 33523964 33524655 -110261800 + MER21B-int LTR ERV1 505 1179 -3012 2125 128 0 0 chr12 33524655 33524943 -110261512 - AluSx SINE Alu -24 288 1 4845 239 95 72 chr12 33524943 33525310 -110261145 + MER21B-int LTR ERV1 1179 1536 -2655 1780 159 7 0 chr12 33525310 33525581 -110260874 - AluJb SINE Alu -31 281 9 4845 239 95 72 chr12 33525581 33526369 -110260086 + MER21B-int LTR ERV1 1536 2394 -1797 397 304 83 33 chr12 33527334 33527515 -110258940 + MIR SINE MIR 1 190 -72 1803 180 0 3 chr12 33527825 33528120 -110258335 + AluJo SINE Alu 9 302 -10 2333 108 0 6 chr12 33528193 33528507 -110257948 + AluSx SINE Alu 1 312 0 363 299 24 90 chr12 33528776 33528987 -110257468 - MIR SINE MIR -48 214 18 933 181 11 28 chr12 33528987 33529164 -110257291 + FAM SINE Alu 2 175 0 2326 98 0 3 chr12 33529299 33529594 -110256861 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33530408 33530440 -110256015 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33530657 33530686 -110255769 + AT_rich Low_complexity Low_complexity 1 29 0 1572 183 21 7 chr12 33530779 33531063 -110255392 + AluJb SINE Alu 5 292 -20 198 0 0 0 chr12 33531357 33531379 -110255076 + (CA)n Simple_repeat Simple_repeat 1 22 0 1915 135 10 3 chr12 33531907 33532203 -110254252 + AluSq SINE Alu 1 298 -15 603 136 0 93 chr12 33532241 33532349 -110254106 + U6 snRNA snRNA 1 99 -8 1946 151 3 3 chr12 33532349 33532648 -110253807 - AluJb SINE Alu -13 299 1 181 346 50 57 chr12 33532714 33532782 -110253673 + MER5A DNA MER1_type 6 73 -116 2067 86 65 3 chr12 33532782 33533072 -110253383 + AluY SINE Alu 2 309 -2 181 346 50 57 chr12 33533072 33533162 -110253293 + MER5A DNA MER1_type 73 163 -26 556 190 36 0 chr12 33533196 33533333 -110253122 - L1MA9 LINE L1 -1 6311 6170 2311 72 4 0 chr12 33533371 33533648 -110252807 + AluSp SINE Alu 1 278 -35 2506 73 3 0 chr12 33533650 33533953 -110252502 + AluSx SINE Alu 1 304 -8 228 54 0 0 chr12 33533953 33533990 -110252465 + AluSp SINE Alu 264 300 -3 2303 92 31 0 chr12 33534171 33534463 -110251992 + AluSp SINE Alu 1 301 -12 603 240 166 74 chr12 33535382 33535707 -110250748 + L1ME LINE L1 5390 5744 -377 307 236 171 21 chr12 33536102 33536242 -110250213 + MIR3 SINE MIR 17 177 -31 212 182 0 0 chr12 33537504 33537548 -110248907 - MIR SINE MIR -10 252 209 2154 118 20 0 chr12 33537559 33537865 -110248590 + AluSx SINE Alu 1 312 0 2048 125 7 7 chr12 33537897 33538202 -110248253 - AluSq SINE Alu -8 305 1 2193 78 3 14 chr12 33538205 33538489 -110247966 - AluSq SINE Alu -12 301 21 307 218 43 146 chr12 33538489 33538769 -110247686 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33539558 33539579 -110246876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33540141 33540162 -110246293 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33540665 33540857 -110245598 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33540857 33540985 -110245470 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33540985 33541319 -110245136 + MARNA DNA Mariner 195 565 -21 2129 104 3 41 chr12 33541429 33541745 -110244710 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33541951 33542066 -110244389 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33542346 33542641 -110243814 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 33544893 33544913 -110241542 + (T)n Simple_repeat Simple_repeat 1 20 0 337 258 60 66 chr12 33545594 33545761 -110240694 + MIR SINE MIR 2 167 -95 576 192 0 0 chr12 33545808 33545907 -110240548 + AluSg/x SINE Alu 206 304 -5 852 178 33 93 chr12 33546892 33547042 -110239413 + MER3 DNA MER1_type 9 144 -65 2264 98 10 0 chr12 33547042 33547337 -110239118 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33547337 33547400 -110239055 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33547346 33547407 -110239048 - MER3 DNA MER1_type -108 101 41 * 220 233 0 27 chr12 33547410 33547427 -110239028 + L2 LINE L2 2694 2710 -604 1840 141 28 0 chr12 33547427 33547718 -110238737 + AluSx SINE Alu 1 299 -13 220 233 0 27 chr12 33547718 33547773 -110238682 + L2 LINE L2 2710 2764 -550 347 124 199 16 chr12 33547773 33547853 -110238602 + AluSc SINE Alu 223 293 -6 25 0 0 0 chr12 33548046 33548071 -110238384 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 33548182 33548205 -110238250 + AT_rich Low_complexity Low_complexity 1 23 0 1578 188 3 11 chr12 33548597 33548884 -110237571 + AluJb SINE Alu 1 285 -27 766 130 0 43 chr12 33548884 33549022 -110237433 - AluJo/FLAM SINE Alu -179 133 2 1012 155 13 0 chr12 33549027 33549182 -110237273 - FRAM SINE Alu -20 156 1 1633 167 53 11 chr12 33549236 33549518 -110236937 - AluJb SINE Alu -18 294 1 842 175 136 6 chr12 33549802 33549979 -110236476 + MLT1D LTR MaLR 306 505 0 25 0 0 0 chr12 33550462 33550487 -110235968 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 33550580 33550600 -110235855 + (TG)n Simple_repeat Simple_repeat 1 20 0 1971 147 3 0 chr12 33550624 33550910 -110235545 - AluSq SINE Alu -26 287 1 2163 95 50 0 chr12 33551796 33552079 -110234376 - AluSq SINE Alu -16 297 1 400 216 95 60 chr12 33552816 33552932 -110233523 + MIR SINE MIR 35 154 -108 1885 164 7 3 chr12 33552957 33553249 -110233206 + AluSx SINE Alu 1 293 -19 1809 138 6 58 chr12 33553249 33553561 -110232894 + AluJb SINE Alu 5 300 -12 255 208 0 0 chr12 33553685 33553733 -110232722 - AluSc SINE Alu -3 296 249 477 239 61 6 chr12 33553739 33553902 -110232553 + AluSq SINE Alu 95 266 -47 1890 88 42 78 chr12 33554059 33554365 -110232090 + AluSc SINE Alu 1 295 -14 400 296 119 6 chr12 33555093 33555269 -110231186 + MIR3 SINE MIR 1 196 -12 673 146 39 0 chr12 33556173 33556276 -110230179 + FLAM_C SINE Alu 2 108 -35 22 35 0 0 chr12 33557024 33557053 -110229402 + AT_rich Low_complexity Low_complexity 1 29 0 502 203 0 32 chr12 33557053 33557176 -110229279 - L1MB8 LINE L1 -5 6173 6055 1207 179 155 8 chr12 33557447 33557698 -110228757 + AluJo SINE Alu 9 296 -16 233 300 25 0 chr12 33557720 33557800 -110228655 + MIR3 SINE MIR 127 208 0 190 306 79 22 chr12 33557881 33558020 -110228435 + L2 LINE L2 2764 2904 -368 291 122 0 0 chr12 33558092 33558133 -110228322 - 5S rRNA rRNA -79 42 2 2213 107 0 3 chr12 33559344 33559643 -110226812 - AluSx SINE Alu -4 308 11 850 163 0 8 chr12 33559644 33559773 -110226682 - AluJb SINE Alu -167 145 18 2233 97 17 3 chr12 33559803 33560092 -110226363 - AluSx SINE Alu -19 293 1 209 331 55 16 chr12 33560092 33560209 -110226246 + L2 LINE L2 1867 1991 -1323 2243 117 0 0 chr12 33560228 33560526 -110225929 - AluSq SINE Alu -15 298 1 241 327 30 30 chr12 33560607 33560708 -110225747 + L2 LINE L2 2990 3090 -182 2411 60 28 0 chr12 33560838 33561123 -110225332 - AluY SINE Alu -18 293 1 283 226 36 24 chr12 33561224 33561308 -110225147 + HsTC2 DNA Tc2 1 85 -1813 247 225 296 0 chr12 33561388 33561530 -110224925 + L1ME LINE L1 5734 5917 -204 2001 122 24 0 chr12 33561675 33561962 -110224493 - AluSg SINE Alu -16 294 1 514 294 87 13 chr12 33563073 33563304 -110223151 + L2 LINE L2 3066 3313 0 2326 101 3 3 chr12 33563339 33563647 -110222808 + AluSx SINE Alu 3 310 -2 615 232 67 24 chr12 33563861 33564025 -110222430 - FAM SINE Alu 0 175 5 787 182 0 39 chr12 33564347 33564501 -110221954 - AluJb SINE Alu -16 296 149 462 163 61 31 chr12 33564504 33564602 -110221853 - AluSg/x SINE Alu -96 214 114 1165 109 0 0 chr12 33564715 33564862 -110221593 - AluSq/x SINE Alu -165 147 1 1184 175 16 0 chr12 33565100 33565283 -110221172 + AluJo SINE Alu 1 186 -126 21 0 0 0 chr12 33565298 33565319 -110221136 + AT_rich Low_complexity Low_complexity 1 21 0 1846 172 7 0 chr12 33565767 33566058 -110220397 - AluJb SINE Alu -19 293 1 2293 106 3 0 chr12 33566128 33566430 -110220025 - AluSg SINE Alu -5 305 3 8600 93 16 23 chr12 33566432 33566547 -110219908 + HSMAR1 DNA Mariner 95 209 -1078 2201 100 40 3 chr12 33566547 33566848 -110219607 - AluSx SINE Alu 0 312 1 8600 93 16 23 chr12 33566848 33567216 -110219239 + HSMAR1 DNA Mariner 209 578 -709 1976 122 14 4 chr12 33567216 33567523 -110218932 + AluSx SINE Alu 1 310 0 8600 93 16 23 chr12 33567523 33568237 -110218218 + HSMAR1 DNA Mariner 578 1285 -2 475 229 10 0 chr12 33568238 33568334 -110218121 - MER58A DNA MER1_type -10 97 1 566 280 139 15 chr12 33568343 33568421 -110218034 + MLT1G LTR MaLR 110 177 -418 198 0 0 0 chr12 33568421 33568443 -110218012 + (TC)n Simple_repeat Simple_repeat 2 23 0 566 280 139 15 chr12 33568443 33568733 -110217722 + MLT1G LTR MaLR 177 547 -48 832 261 22 35 chr12 33568733 33568756 -110217699 + MER58A DNA MER1_type 1 23 -2397 1282 216 18 85 chr12 33568756 33569145 -110217310 + MLT1A1 LTR MaLR 1 363 -2 832 261 22 35 chr12 33569145 33569347 -110217108 + MER58A DNA MER1_type 23 223 -1 195 319 42 0 chr12 33569407 33569479 -110216976 + L2 LINE L2 2995 3069 -244 1934 150 6 13 chr12 33570094 33570408 -110216047 + AluSx SINE Alu 1 312 0 1909 132 3 63 chr12 33570633 33570951 -110215504 - AluSx SINE Alu -11 301 3 239 328 0 0 chr12 33571764 33571822 -110214633 + Tigger3(Golem) DNA MER2_type 1 58 -2971 758 144 23 45 chr12 33571824 33571956 -110214499 + Tigger3(Golem) DNA MER2_type 2878 3006 -23 207 161 0 0 chr12 33571956 33571987 -110214468 + polypyrimidine Low_complexity Low_complexity 2 32 0 268 382 27 9 chr12 33571988 33572098 -110214357 - L2 LINE L2 -25 3247 3136 370 333 114 31 chr12 33572264 33572615 -110213840 - L2 LINE L2 -1 3312 2933 290 297 232 14 chr12 33572639 33572915 -110213540 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 33573008 33573304 -110213151 + AluJb SINE Alu 1 297 -15 1584 136 21 4 chr12 33573891 33574134 -110212321 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33574196 33574256 -110212199 + GA-rich Low_complexity Low_complexity 4 65 0 646 205 0 8 chr12 33575101 33575228 -110211227 - AluJo SINE Alu -102 210 85 182 188 0 0 chr12 33575899 33575931 -110210524 + MIR SINE MIR 81 112 -150 1034 104 0 0 chr12 33576090 33576224 -110210231 + AluSq/x SINE Alu 1 134 -178 2108 130 7 7 chr12 33576225 33576532 -110209923 + AluSx SINE Alu 1 307 -5 284 234 211 0 chr12 33577182 33577310 -110209145 + MIR SINE MIR 32 186 -76 1467 117 5 19 chr12 33577761 33577974 -110208481 + AluSx SINE Alu 1 210 -102 2284 87 14 0 chr12 33578174 33578463 -110207992 + AluSg SINE Alu 1 293 -17 2108 141 3 0 chr12 33578477 33578782 -110207673 + AluSx SINE Alu 1 306 -6 241 232 0 18 chr12 33578860 33578916 -110207539 - L2 LINE L2 -884 2430 2376 2390 101 3 0 chr12 33578916 33579222 -110207233 + AluSx SINE Alu 1 307 -5 444 296 112 16 chr12 33579386 33579723 -110206732 - LTR16A LTR ERVL -6 444 24 2458 92 0 0 chr12 33580045 33580348 -110206107 - AluSq SINE Alu -9 304 2 378 304 30 0 chr12 33580432 33580567 -110205888 - MIR SINE MIR -56 206 68 2225 108 6 19 chr12 33582140 33582455 -110204000 + AluSx SINE Alu 1 311 -1 2279 95 7 0 chr12 33584434 33584730 -110201725 + AluSx SINE Alu 1 298 -14 316 71 0 0 chr12 33585247 33585289 -110201166 + AluSg/x SINE Alu 65 106 -194 228 54 0 0 chr12 33585557 33585594 -110200861 - Alu SINE Alu -3 300 264 2206 97 3 7 chr12 33585594 33585884 -110200571 - AluSx SINE Alu -8 304 16 708 139 0 151 chr12 33585905 33586071 -110200384 + FLAM_C SINE Alu 2 142 -1 2412 98 0 0 chr12 33586075 33586382 -110200073 + AluSx SINE Alu 1 307 -5 1351 174 5 0 chr12 33586424 33586642 -110199813 + AluJo SINE Alu 84 302 -10 1100 209 155 30 chr12 33586642 33586679 -110199776 - MLT1A1 LTR MaLR -32 333 302 2047 110 3 28 chr12 33586679 33586994 -110199461 + AluSq SINE Alu 1 308 0 1100 209 155 30 chr12 33586994 33587251 -110199204 - MLT1A1 LTR MaLR -63 302 1 356 223 46 31 chr12 33587376 33587506 -110198949 + L1M4 LINE L1 5167 5298 -848 1343 170 22 9 chr12 33587802 33588032 -110198423 - AluSx SINE Alu -79 233 1 1312 152 118 13 chr12 33588770 33589007 -110197448 + AluSx SINE Alu 2 263 -49 240 259 27 65 chr12 33589161 33589346 -110197109 + G-rich Low_complexity Low_complexity 2 179 0 225 193 0 0 chr12 33589374 33589431 -110197024 + AluSx SINE Alu 240 296 -6 288 210 120 40 chr12 33589431 33589531 -110196924 + L1M4 LINE L1 2470 2577 -3569 2195 120 3 0 chr12 33589540 33589841 -110196614 + AluSg SINE Alu 1 302 -8 300 185 0 0 chr12 33589850 33589904 -110196551 + L1M4 LINE L1 2667 2720 -3426 1923 121 3 51 chr12 33589910 33590223 -110196232 + AluSq SINE Alu 1 298 -15 687 110 63 31 chr12 33590353 33590480 -110195975 - AluSq/x SINE Alu -181 132 2 2172 85 6 31 chr12 33590685 33591004 -110195451 - AluY SINE Alu 0 311 1 2007 154 0 0 chr12 33591005 33591297 -110195158 - AluJb SINE Alu -16 296 5 892 202 6 6 chr12 33592108 33592276 -110194179 - AluJo SINE Alu -107 205 38 24 32 0 0 chr12 33592468 33592499 -110193956 + GC_rich Low_complexity Low_complexity 1 31 0 2367 63 30 0 chr12 33593260 33593559 -110192896 + AluY SINE Alu 4 311 0 2162 119 7 0 chr12 33593632 33593935 -110192520 + AluSx SINE Alu 1 305 -7 2553 37 0 7 chr12 33594778 33595077 -110191378 - AluY SINE Alu -14 297 1 691 216 0 8 chr12 33595372 33595506 -110190949 + FLAM_A SINE Alu 1 133 0 2451 69 7 7 chr12 33596375 33596681 -110189774 - AluY SINE Alu -5 306 1 526 226 0 0 chr12 33596820 33596922 -110189533 + U13 snRNA snRNA 1 102 -2 1676 181 17 0 chr12 33597016 33597309 -110189146 - AluJb SINE Alu -14 298 1 2412 81 0 3 chr12 33597969 33598277 -110188178 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 33598517 33598553 -110187902 + AT_rich Low_complexity Low_complexity 1 36 0 787 185 15 0 chr12 33599199 33599329 -110187126 + FLAM_C SINE Alu 2 133 0 26 30 0 0 chr12 33599999 33600032 -110186423 + AT_rich Low_complexity Low_complexity 1 33 0 2183 119 3 7 chr12 33600514 33600816 -110185639 + AluSx SINE Alu 1 301 -11 297 261 15 0 chr12 33600875 33600940 -110185515 - MIR3 SINE MIR -45 163 98 2092 130 0 7 chr12 33601096 33601397 -110185058 - AluSg1 SINE Alu -10 299 1 2556 59 0 7 chr12 33601467 33601774 -110184681 - AluY SINE Alu -6 305 1 2118 131 3 0 chr12 33602394 33602700 -110183755 + AluSg SINE Alu 1 307 -3 2268 119 0 0 chr12 33602702 33603004 -110183451 + AluSx SINE Alu 1 302 -10 1570 174 45 17 chr12 33603458 33603746 -110182709 + AluJo SINE Alu 1 296 -16 2566 52 0 3 chr12 33604363 33604668 -110181787 - AluY SINE Alu -7 304 1 2209 97 33 0 chr12 33605585 33605885 -110180570 + AluSp SINE Alu 1 310 -3 1997 118 13 20 chr12 33605943 33606247 -110180208 - AluSc SINE Alu -7 302 1 2148 112 3 0 chr12 33607393 33607680 -110178775 - AluSq SINE Alu -25 288 1 630 110 22 0 chr12 33607732 33607823 -110178632 - AluSg/x SINE Alu -8 302 210 1075 224 112 10 chr12 33608138 33608442 -110178013 - MER46C DNA MER2_type -3 335 1 2244 118 10 0 chr12 33609331 33609635 -110176820 + AluSq SINE Alu 1 307 -6 1911 148 13 10 chr12 33609635 33609944 -110176511 + AluSx SINE Alu 1 311 -1 285 344 42 0 chr12 33610065 33610161 -110176294 + L2 LINE L2 3173 3272 0 2148 100 0 23 chr12 33610323 33610623 -110175832 - AluSq SINE Alu -20 293 1 207 299 250 20 chr12 33610836 33611040 -110175415 + L2 LINE L2 2804 3054 -218 2058 123 3 16 chr12 33611208 33611518 -110174937 - AluSx SINE Alu -4 308 3 2118 117 10 0 chr12 33612029 33612320 -110174135 - AluSx SINE Alu -18 294 1 671 277 52 60 chr12 33612628 33612733 -110173722 + L1MEc LINE L1 1058 1162 -5234 2158 105 18 0 chr12 33612733 33613018 -110173437 + AluSc SINE Alu 1 290 -19 671 277 52 60 chr12 33613018 33613066 -110173389 + L1MEc LINE L1 1162 1209 -5187 2232 131 0 0 chr12 33613066 33613378 -110173077 + AluSx SINE Alu 1 312 0 671 277 52 60 chr12 33613378 33613763 -110172692 + L1MEc LINE L1 1209 1616 -4780 335 308 10 39 chr12 33613769 33613873 -110172582 + L1MEc LINE L1 1545 1645 -4751 1608 127 68 55 chr12 33613998 33614290 -110172165 + AluJo SINE Alu 1 296 -16 1779 168 3 3 chr12 33614627 33614912 -110171543 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33614912 33614934 -110171521 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 312 224 0 0 chr12 33614934 33615001 -110171454 + L1MEc LINE L1 2998 3064 -3151 416 275 55 44 chr12 33615036 33615180 -110171275 + L1MEc LINE L1 3151 3292 -2923 1756 176 0 16 chr12 33615180 33615487 -110170968 + AluJb SINE Alu 1 302 -10 416 275 55 44 chr12 33615487 33615706 -110170749 + L1MEc LINE L1 3292 3518 -2697 2132 124 10 0 chr12 33615709 33616016 -110170439 + AluSx SINE Alu 1 310 -2 649 231 99 58 chr12 33616033 33616275 -110170180 + MER21B LTR ERV1 329 580 -283 1680 144 133 32 chr12 33616329 33616609 -110169846 + MSTB1 LTR MaLR 51 374 -58 1844 159 7 3 chr12 33616609 33616767 -110169688 - AluJb SINE Alu -16 296 135 2308 93 10 0 chr12 33616767 33617069 -110169386 - AluSp SINE Alu -8 305 1 1844 159 7 3 chr12 33617069 33617205 -110169250 - AluJb SINE Alu -177 135 1 1680 144 133 32 chr12 33617205 33617271 -110169184 + MSTB1 LTR MaLR 374 432 0 447 248 174 6 chr12 33617284 33617445 -110169010 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33617450 33617849 -110168606 + MER21B-int LTR ERV1 18 427 -3764 473 229 17 8 chr12 33617857 33617975 -110168480 - MER21-int LTR ERV1 -3657 534 416 1219 154 84 22 chr12 33617975 33618202 -110168253 - AluSx SINE Alu -17 295 55 456 74 0 0 chr12 33618211 33618265 -110168190 - AluSq/x SINE Alu -193 119 66 4854 241 93 70 chr12 33618268 33618959 -110167496 + MER21B-int LTR ERV1 505 1179 -3012 2107 128 0 0 chr12 33618959 33619247 -110167208 - AluSx SINE Alu -24 288 1 4854 241 93 70 chr12 33619247 33619614 -110166841 + MER21B-int LTR ERV1 1179 1536 -2655 1765 159 7 0 chr12 33619614 33619885 -110166570 - AluJb SINE Alu -31 281 9 4854 241 93 70 chr12 33619885 33620673 -110165782 + MER21B-int LTR ERV1 1536 2394 -1797 459 287 83 33 chr12 33621638 33621819 -110164636 + MIR SINE MIR 1 190 -72 1791 180 0 3 chr12 33622129 33622424 -110164031 + AluJo SINE Alu 9 302 -10 2297 112 0 6 chr12 33622497 33622811 -110163644 + AluSx SINE Alu 1 312 0 428 313 27 80 chr12 33623066 33623290 -110163165 - MIR SINE MIR -33 229 18 994 181 11 28 chr12 33623290 33623467 -110162988 + FAM SINE Alu 2 175 0 2301 98 0 3 chr12 33623602 33623897 -110162558 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33624711 33624743 -110161712 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33624960 33624989 -110161466 + AT_rich Low_complexity Low_complexity 1 29 0 1552 184 21 7 chr12 33625082 33625365 -110161090 + AluJb SINE Alu 5 291 -21 300 257 37 46 chr12 33627157 33627266 -110159189 + MIR SINE MIR 32 139 -69 607 275 144 45 chr12 33627940 33628466 -110157989 - L2 LINE L2 -1 3271 2711 354 293 28 9 chr12 33628733 33628839 -110157616 + L2 LINE L2 440 547 -2767 1203 222 102 177 chr12 33628858 33629230 -110157225 + L2 LINE L2 2153 2551 -762 834 181 0 0 chr12 33629230 33629363 -110157092 - FRAM SINE Alu -8 168 36 1203 222 102 177 chr12 33629363 33629778 -110156677 + L2 LINE L2 2551 3000 -313 382 281 116 0 chr12 33629782 33629903 -110156552 + MLT1G LTR MaLR 20 154 -441 * 775 209 148 5 chr12 33629901 33629999 -110156456 - MER58A DNA MER1_type -2196 224 141 9647 91 15 28 chr12 33629999 33630098 -110156357 + HSMAR1 DNA Mariner 1 100 -1187 2196 109 3 0 chr12 33630098 33630391 -110156064 - AluSg SINE Alu -14 296 3 9647 91 15 28 chr12 33630391 33630508 -110155947 + HSMAR1 DNA Mariner 100 217 -1070 2182 100 40 3 chr12 33630508 33630809 -110155646 - AluSx SINE Alu 0 312 1 9647 91 15 28 chr12 33630809 33631177 -110155278 + HSMAR1 DNA Mariner 217 588 -699 1955 122 14 4 chr12 33631177 33631494 -110154961 + AluSx SINE Alu 1 320 0 9647 91 15 28 chr12 33631494 33632208 -110154247 + HSMAR1 DNA Mariner 588 1285 -2 775 209 148 5 chr12 33632208 33632305 -110154150 - MER58A DNA MER1_type -2279 141 1 560 280 139 15 chr12 33632314 33632392 -110154063 + MLT1G LTR MaLR 110 177 -418 234 0 0 0 chr12 33632392 33632418 -110154037 + (TC)n Simple_repeat Simple_repeat 2 27 0 560 280 139 15 chr12 33632418 33632708 -110153747 + MLT1G LTR MaLR 177 547 -48 830 261 22 35 chr12 33632708 33632731 -110153724 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 33632731 33633120 -110153335 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 33633120 33633322 -110153133 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 33633382 33633481 -110152974 + L2 LINE L2 2995 3095 -218 1910 150 6 13 chr12 33634071 33634385 -110152070 + AluSx SINE Alu 1 312 0 189 174 304 0 chr12 33634488 33634534 -110151921 + L2 LINE L2 3213 3272 0 1877 135 3 63 chr12 33634610 33634928 -110151527 - AluSx SINE Alu -11 301 3 241 328 0 0 chr12 33635741 33635799 -110150656 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 33635801 33635933 -110150522 + Tigger3(Golem) DNA MER2_type 2877 3005 -24 207 161 0 0 chr12 33635933 33635964 -110150491 + polypyrimidine Low_complexity Low_complexity 2 32 0 305 382 27 9 chr12 33635965 33636075 -110150380 - L2 LINE L2 -25 3247 3136 440 321 149 35 chr12 33636241 33636892 -110149563 - L2 LINE L2 -1 3312 2291 1855 169 3 0 chr12 33636985 33637281 -110149174 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 33637868 33638111 -110148344 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33638173 33638233 -110148222 + GA-rich Low_complexity Low_complexity 4 65 0 689 205 0 8 chr12 33639078 33639205 -110147250 - AluJo SINE Alu -102 210 85 206 303 131 20 chr12 33639809 33639908 -110146547 + MIR3 SINE MIR 4 113 -95 1023 104 0 0 chr12 33640067 33640201 -110146254 + AluSq/x SINE Alu 1 134 -178 2028 139 7 7 chr12 33640202 33640511 -110145944 + AluSx SINE Alu 1 309 -3 590 113 10 0 chr12 33640780 33640877 -110145578 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 315 0 0 0 chr12 33640877 33640912 -110145543 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 653 228 0 0 chr12 33640912 33641026 -110145429 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 33641067 33641679 -110144776 + MER51A LTR ERV1 1 634 0 322 279 16 33 chr12 33641946 33642031 -110144424 + MIR SINE MIR 72 156 -106 2427 83 10 0 chr12 33642031 33642331 -110144124 - AluSx SINE Alu -9 303 1 322 279 16 33 chr12 33642331 33642367 -110144088 + MIR SINE MIR 156 191 -71 868 137 0 0 chr12 33643237 33643354 -110143101 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 33643362 33643391 -110143064 + AT_rich Low_complexity Low_complexity 1 29 0 2203 102 14 0 chr12 33644313 33644608 -110141847 + AluSx SINE Alu 9 307 -5 24 0 0 0 chr12 33645166 33645190 -110141265 + AT_rich Low_complexity Low_complexity 1 24 0 2401 86 0 0 chr12 33645408 33645710 -110140745 - AluSx SINE Alu -10 302 1 929 288 152 32 chr12 33645735 33646270 -110140185 + L2 LINE L2 2726 3313 0 231 87 0 43 chr12 33646480 33646526 -110139929 + Alu SINE Alu 259 302 -1 189 0 0 0 chr12 33646822 33646843 -110139612 + (A)n Simple_repeat Simple_repeat 1 21 0 237 114 0 0 chr12 33647748 33647783 -110138672 + Alu SINE Alu 249 283 -19 2150 97 20 13 chr12 33648090 33648390 -110138065 + AluSp SINE Alu 1 302 -11 1468 210 76 34 chr12 33648486 33648814 -110137641 + MER2 DNA MER2_type 2 343 -1 345 230 42 204 chr12 33649535 33649689 -110136766 + MIR SINE MIR 1 178 -84 2261 97 0 7 chr12 33649689 33649987 -110136468 + AluSg SINE Alu 1 296 -14 345 230 42 204 chr12 33649987 33650072 -110136383 + MIR SINE MIR 178 182 -80 2211 121 0 3 chr12 33650072 33650385 -110136070 + AluSx SINE Alu 1 312 0 345 230 42 204 chr12 33650385 33650453 -110136002 + MIR SINE MIR 182 259 -3 254 247 0 56 chr12 33650879 33650968 -110135487 + CT-rich Low_complexity Low_complexity 6 89 0 1877 139 60 117 chr12 33651138 33651208 -110135247 - MSTB1 LTR MaLR 0 432 360 1632 147 17 51 chr12 33651208 33651501 -110134954 + AluJo SINE Alu 1 283 -29 1877 139 60 117 chr12 33651501 33651883 -110134572 - MSTB1 LTR MaLR -72 360 6 26 50 0 0 chr12 33653166 33653206 -110133249 + AT_rich Low_complexity Low_complexity 1 40 0 2378 224 97 47 chr12 33653669 33654213 -110132242 + L2 LINE L2 2022 2537 -776 2350 97 10 6 chr12 33654213 33654524 -110131931 - AluSx SINE Alu 0 312 1 2378 224 97 47 chr12 33654524 33655072 -110131383 + L2 LINE L2 2537 3185 -128 1857 168 45 15 chr12 33655072 33655406 -110131049 - MER2 DNA MER2_type 0 344 1 2378 224 97 47 chr12 33655406 33655540 -110130915 + L2 LINE L2 3185 3311 -2 351 270 212 61 chr12 33657275 33657704 -110128751 + L1M2 LINE L1 802 1295 -5554 28 29 0 0 chr12 33657854 33657889 -110128566 + GC_rich Low_complexity Low_complexity 1 35 0 756 163 0 52 chr12 33658633 33658768 -110127687 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr12 33658772 33658793 -110127662 + AT_rich Low_complexity Low_complexity 1 21 0 833 126 8 31 chr12 33658793 33658920 -110127535 - FLAM_C SINE Alu -9 124 1 1104 201 18 14 chr12 33659189 33659408 -110127047 + AluJo SINE Alu 1 220 -92 349 56 19 74 chr12 33659409 33659463 -110126992 + AluSq/x SINE Alu 87 133 -170 2239 92 10 7 chr12 33659504 33659808 -110126647 + AluSc SINE Alu 1 305 -4 184 331 71 55 chr12 33659913 33660040 -110126415 + L2 LINE L2 3139 3267 -5 2161 110 16 13 chr12 33660132 33660442 -110126013 + AluSx SINE Alu 1 311 -1 606 125 0 80 chr12 33660472 33660494 -110125961 - U5 snRNA snRNA -13 103 81 2253 107 3 0 chr12 33660494 33660794 -110125661 + AluSq SINE Alu 1 301 -12 606 125 0 80 chr12 33660794 33660883 -110125572 - U5 snRNA snRNA -35 81 1 1581 147 0 19 chr12 33661906 33662164 -110124291 - AluJb SINE Alu -49 263 11 321 188 50 40 chr12 33662164 33662265 -110124190 + LTR41 LTR ERVL 656 757 -16 1631 223 53 27 chr12 33662270 33662646 -110123809 + L1ME1 LINE L1 5733 6122 -44 2445 81 0 0 chr12 33662646 33662941 -110123514 - AluSx SINE Alu -17 295 1 1631 223 53 27 chr12 33662941 33662976 -110123479 + L1ME1 LINE L1 6122 6155 -11 901 197 0 0 chr12 33662976 33663123 -110123332 + AluJb SINE Alu 134 280 -32 288 77 0 0 chr12 33663123 33663162 -110123293 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 585 299 116 9 chr12 33663390 33663614 -110122841 + MIR SINE MIR 15 262 0 348 130 0 29 chr12 33663664 33663733 -110122722 - Alu SINE Alu -1 301 235 932 198 144 18 chr12 33664046 33664096 -110122359 - MER33 DNA MER1_type -2274 311 269 2130 99 3 7 chr12 33664096 33664379 -110122076 - AluSc SINE Alu -16 293 12 932 198 144 18 chr12 33664379 33664394 -110122061 - MER33 DNA MER1_type -2316 269 257 246 32 0 0 chr12 33664394 33664425 -110122030 + (CAA)n Simple_repeat Simple_repeat 2 32 0 932 198 144 18 chr12 33664425 33664645 -110121810 - MER33 DNA MER1_type -2328 257 1 802 159 0 36 chr12 33664865 33665003 -110121452 - FLAM_A SINE Alu 0 133 1 386 349 160 12 chr12 33665310 33665769 -110120686 + L2 LINE L2 2565 3087 -185 1381 165 43 18 chr12 33666010 33666289 -110120166 - AluJb SINE Alu -26 286 1 2114 141 0 13 chr12 33666601 33666914 -110119541 - AluSx SINE Alu -3 309 1 583 179 0 0 chr12 33667171 33667266 -110119189 + L1MB5 LINE L1 6080 6174 0 198 0 0 0 chr12 33667593 33667615 -110118840 + (T)n Simple_repeat Simple_repeat 1 22 0 470 250 83 23 chr12 33667772 33667904 -110118551 + MLT1H LTR MaLR 101 240 -309 2094 106 0 11 chr12 33667922 33668204 -110118251 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 33668238 33668284 -110118171 + A-rich Low_complexity Low_complexity 1 46 0 1847 233 119 8 chr12 33668486 33669083 -110117372 + L1MC4 LINE L1 5343 6005 -2037 * 2321 173 69 12 chr12 33668743 33669251 -110117204 + L1MB8 LINE L1 5642 6178 0 1621 186 3 10 chr12 33669261 33669552 -110116903 + AluJb SINE Alu 1 289 -23 1745 148 18 0 chr12 33670148 33670425 -110116030 + L1MD3 LINE L1 7697 7978 -17 936 275 153 43 chr12 33670486 33671049 -110115406 - L2 LINE L2 0 3313 2690 2332 99 0 0 chr12 33671049 33671343 -110115112 + AluSg SINE Alu 1 294 -16 936 275 153 43 chr12 33671343 33671373 -110115082 - L2 LINE L2 -623 2690 2665 622 271 48 39 chr12 33671378 33671607 -110114848 + L1MC4 LINE L1 7443 7673 -369 1419 208 145 28 chr12 33671615 33672042 -110114413 - MLT1D LTR MaLR 0 505 29 1136 260 92 52 chr12 33672042 33672431 -110114024 - L2 LINE L2 -701 2613 2204 2276 93 6 6 chr12 33672431 33672742 -110113713 + AluSq SINE Alu 1 311 -2 1136 260 92 52 chr12 33672742 33672775 -110113680 - L2 LINE L2 -1110 2204 2174 894 114 76 0 chr12 33673104 33673235 -110113220 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 33673252 33673299 -110113156 + AT_rich Low_complexity Low_complexity 1 47 0 2401 86 0 0 chr12 33673642 33673944 -110112511 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 33674162 33674186 -110112269 + AT_rich Low_complexity Low_complexity 1 24 0 2270 99 13 0 chr12 33674744 33675047 -110111408 - AluSx SINE Alu -5 307 1 239 290 29 82 chr12 33675480 33675687 -110110768 - L2 LINE L2 -1 3312 3117 367 327 103 49 chr12 33676043 33676392 -110110063 - L2 LINE L2 -609 2705 2338 464 242 96 35 chr12 33676733 33676931 -110109524 - MER2 DNA MER2_type 0 345 136 1834 94 0 80 chr12 33677708 33677996 -110108459 - AluSx SINE Alu -12 300 36 1290 123 0 0 chr12 33678475 33678654 -110107801 + AluSg/x SINE Alu 131 309 -1 14895 135 40 34 chr12 33678851 33678960 -110107495 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 33678960 33679006 -110107449 + (CA)n Simple_repeat Simple_repeat 2 47 0 14895 135 40 34 chr12 33679006 33679396 -110107059 + L1MA3 LINE L1 1773 2159 -5565 2630 135 41 12 chr12 33679396 33679812 -110106643 + MSTA LTR MaLR 1 428 0 14895 135 40 34 chr12 33679812 33682135 -110104320 + L1MA3 LINE L1 2159 4468 -3256 2195 125 0 6 chr12 33682135 33682446 -110104009 + AluSx SINE Alu 1 309 -3 14895 135 40 34 chr12 33682446 33683922 -110102533 + L1MA3 LINE L1 4468 5935 -1789 1936 146 0 0 chr12 33683922 33684202 -110102253 + AluSx SINE Alu 1 280 -32 14895 135 40 34 chr12 33684202 33685556 -110100899 + L1MA3 LINE L1 5935 7371 -353 2380 90 0 7 chr12 33685556 33685856 -110100599 + AluSg SINE Alu 1 298 -12 14895 135 40 34 chr12 33685856 33686211 -110100244 + L1MA3 LINE L1 7371 7723 -1 1610 177 3 11 chr12 33686228 33686511 -110099944 + AluJb SINE Alu 5 285 -27 1095 151 0 49 chr12 33686580 33686765 -110099690 + AluJb SINE Alu 113 288 -24 2039 121 21 0 chr12 33687439 33687719 -110098736 + AluSx SINE Alu 1 286 -26 21 104 0 0 chr12 33687729 33687806 -110098649 + AT_rich Low_complexity Low_complexity 1 77 0 1854 162 0 10 chr12 33687840 33688136 -110098319 - AluJb SINE Alu -19 293 1 324 248 51 29 chr12 33688163 33688300 -110098155 + L1ME4a LINE L1 5093 5232 -914 414 236 60 51 chr12 33688303 33688578 -110097877 + L1MC5 LINE L1 7261 7498 -463 1682 136 31 8 chr12 33688785 33689043 -110097412 - L1PA16 LINE L1 -2 6164 5901 372 268 106 68 chr12 33689073 33689223 -110097232 + L1ME4a LINE L1 5751 5894 -227 1713 160 30 20 chr12 33689223 33689523 -110096932 + AluJb SINE Alu 1 303 -9 372 268 106 68 chr12 33689523 33689693 -110096762 + L1ME4a LINE L1 5894 6083 -38 2258 98 3 0 chr12 33689956 33690243 -110096212 + AluSx SINE Alu 1 288 -24 397 265 0 80 chr12 33690771 33690922 -110095533 - L1MC5 LINE L1 -72 7889 7751 2126 117 21 0 chr12 33690955 33691246 -110095209 - AluSg SINE Alu -13 297 1 2199 107 3 3 chr12 33691259 33691557 -110094898 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 33691604 33691629 -110094826 + AT_rich Low_complexity Low_complexity 1 25 0 1722 174 33 10 chr12 33691661 33691966 -110094489 + AluJb SINE Alu 1 312 0 1714 166 3 20 chr12 33692450 33692751 -110093704 - AluJo SINE Alu -16 296 1 2409 102 5 18 chr12 33693218 33693742 -110092713 - L1PA10 LINE L1 0 6168 5570 45355 34 5 2 chr12 33693755 33699894 -110086561 - L1PA4 LINE L1 -3 6152 1 2042 139 10 0 chr12 33699895 33700190 -110086265 - AluSx SINE Alu -14 298 1 456 114 0 102 chr12 33700285 33700373 -110086082 + FLAM_A SINE Alu 62 140 -2 469 281 76 63 chr12 33700511 33701046 -110085409 + HAL1b LINE L1 1193 1346 -2 1583 131 0 13 chr12 33701066 33701295 -110085160 - AluJb SINE Alu -11 301 76 207 0 0 0 chr12 33701503 33701526 -110084929 + (A)n Simple_repeat Simple_repeat 1 23 0 799 167 97 14 chr12 33701605 33701749 -110084706 + FRAM SINE Alu 1 156 -10 2391 234 93 52 chr12 33703681 33704621 -110081834 + L2 LINE L2 2111 3088 -225 787 211 0 0 chr12 33705034 33705167 -110081288 + FLAM_A SINE Alu 1 133 0 272 193 70 0 chr12 33705403 33705460 -110080995 - L2 LINE L2 -4 3268 3208 281 236 11 45 chr12 33705604 33705693 -110080762 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 33705996 33706018 -110080437 + AT_rich Low_complexity Low_complexity 1 22 0 1990 105 3 18 chr12 33706019 33706305 -110080150 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 33706309 33706343 -110080112 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 33707341 33707365 -110079090 + AT_rich Low_complexity Low_complexity 1 24 0 1982 161 0 3 chr12 33707526 33707825 -110078630 + AluSx SINE Alu 1 298 -14 1499 182 0 25 chr12 33708254 33708577 -110077878 - AluJb SINE Alu 0 327 12 381 164 16 0 chr12 33708735 33708796 -110077659 + MLT1F LTR MaLR 1 62 -480 1242 183 62 5 chr12 33708827 33709051 -110077404 + AluJb SINE Alu 1 237 -75 278 258 106 68 chr12 33709400 33709532 -110076923 + MIR SINE MIR 15 146 -62 1732 172 0 23 chr12 33709562 33709865 -110076590 + AluJb SINE Alu 1 296 -16 1054 201 0 0 chr12 33709876 33710040 -110076415 + FAM SINE Alu 1 164 -11 297 0 0 0 chr12 33710041 33710074 -110076381 + (TG)n Simple_repeat Simple_repeat 2 34 0 751 167 0 0 chr12 33710190 33710310 -110076145 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 33710310 33710343 -110076112 + AT_rich Low_complexity Low_complexity 1 33 0 535 196 0 0 chr12 33710575 33710667 -110075788 + AluSc SINE Alu 128 219 -90 612 152 0 19 chr12 33710735 33710840 -110075615 + MER65A LTR ERV1 343 445 0 1088 163 0 0 chr12 33710870 33711036 -110075419 + AluJb SINE Alu 133 298 -14 710 79 0 0 chr12 33711160 33711249 -110075206 + AluSg/x SINE Alu 211 299 -10 324 339 0 16 chr12 33711249 33711376 -110075079 + L2 LINE L2 2623 2747 -567 928 161 0 25 chr12 33711376 33711537 -110074918 + FRAM SINE Alu 10 166 -10 821 127 8 45 chr12 33711571 33711705 -110074750 - FLAM_C SINE Alu -13 130 2 1998 132 132 0 chr12 33711764 33712083 -110074372 + MER46B DNA MER2_type 1 236 0 734 172 8 39 chr12 33712627 33712755 -110073700 - FLAM_A SINE Alu -9 124 1 1795 159 20 10 chr12 33712763 33713065 -110073390 - AluJb SINE Alu -7 305 1 1017 160 11 17 chr12 33714252 33714427 -110072028 + FAM SINE Alu 1 174 -1 1771 153 7 17 chr12 33714427 33714715 -110071740 + AluJb SINE Alu 6 290 -22 33 54 0 0 chr12 33714715 33714752 -110071703 + AT_rich Low_complexity Low_complexity 1 37 0 793 81 0 113 chr12 33715008 33715168 -110071287 + AluSg/x SINE Alu 163 304 -6 1732 146 19 41 chr12 33716229 33716545 -110069910 + AluSx SINE Alu 1 309 -3 1090 185 0 0 chr12 33716546 33716719 -110069736 + AluJb SINE Alu 134 306 -6 1990 122 0 20 chr12 33716722 33717018 -110069437 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 33717029 33717087 -110069368 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1735 148 10 61 chr12 33717155 33717465 -110068990 + AluJo SINE Alu 1 294 -18 24 67 0 0 chr12 33717933 33717978 -110068477 + AT_rich Low_complexity Low_complexity 1 45 0 2636 52 0 3 chr12 33717983 33718291 -110068164 + AluY SINE Alu 1 307 -4 1869 164 0 10 chr12 33718396 33718706 -110067749 + AluJb SINE Alu 1 307 -5 326 234 211 0 chr12 33719355 33719483 -110066972 + MIR SINE MIR 32 186 -76 1866 145 16 7 chr12 33719934 33720193 -110066262 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 33720193 33720220 -110066235 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1866 145 16 7 chr12 33720220 33720264 -110066191 + AluSx SINE Alu 265 307 -5 379 174 11 11 chr12 33720264 33720356 -110066099 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 33720513 33720544 -110065911 + AT_rich Low_complexity Low_complexity 1 31 0 2012 153 0 6 chr12 33721035 33721349 -110065106 - AluSx SINE Alu 0 312 1 1681 160 28 25 chr12 33721378 33721660 -110064795 + AluJb SINE Alu 1 283 -29 596 182 8 46 chr12 33722174 33722434 -110064021 + G-rich Low_complexity Low_complexity 1 250 0 207 200 0 0 chr12 33722441 33722476 -110063979 + A-rich Low_complexity Low_complexity 3 37 0 485 102 0 102 chr12 33722477 33722664 -110063791 + (GGGGA)n Simple_repeat Simple_repeat 1 168 0 183 80 0 0 chr12 33722674 33722699 -110063756 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2246 125 0 0 chr12 33723383 33723688 -110062767 + AluSx SINE Alu 1 305 -7 1135 132 198 5 chr12 33724700 33724897 -110061558 - MER46A DNA MER2_type 0 236 2 476 164 14 0 chr12 33724967 33725040 -110061415 - MER46A DNA MER2_type -161 75 2 321 190 0 17 chr12 33724993 33725051 -110061404 + MER46A DNA MER2_type 97 153 -83 * 2041 157 7 0 chr12 33725090 33725396 -110061059 + AluSx SINE Alu 1 308 -4 968 212 11 0 chr12 33725406 33725585 -110060870 + L1MC/D LINE L1 5444 5624 -2161 * 1730 146 81 68 chr12 33725568 33725776 -110060679 + L1MC3 LINE L1 7339 7543 -242 2728 116 16 3 chr12 33725776 33726146 -110060309 + THE1C LTR MaLR 1 375 0 1730 146 81 68 chr12 33726146 33726182 -110060273 + L1MC3 LINE L1 7543 7577 -208 2312 109 3 0 chr12 33726182 33726493 -110059962 + AluSq SINE Alu 1 312 -1 1730 146 81 68 chr12 33726493 33726657 -110059798 + L1MC3 LINE L1 7577 7753 -32 2383 86 7 0 chr12 33726726 33727029 -110059426 + AluSg SINE Alu 2 306 -4 1809 157 32 0 chr12 33727968 33728249 -110058206 + AluJb SINE Alu 1 290 -22 453 267 184 24 chr12 33729485 33729765 -110056690 + MLT1J1 LTR MaLR 99 428 -18 2107 128 10 3 chr12 33729931 33730228 -110056227 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 33730511 33730533 -110055922 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1670 171 11 18 chr12 33730534 33730820 -110055635 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 33730966 33730995 -110055460 + AT_rich Low_complexity Low_complexity 1 29 0 831 69 0 0 chr12 33730995 33731096 -110055359 - HY3 scRNA scRNA 0 101 1 1586 273 83 57 chr12 33731171 33731871 -110054584 - MER21B LTR ERV1 -129 734 17 936 210 194 24 chr12 33731874 33732126 -110054329 - AluJo SINE Alu -7 295 1 207 299 37 52 chr12 33733829 33733963 -110052492 + L2 LINE L2 2264 2395 -919 359 178 0 0 chr12 33734024 33734083 -110052372 + Alu SINE Alu 1 53 -248 667 200 82 7 chr12 33734113 33734248 -110052207 + FRAM SINE Alu 20 164 -12 341 186 0 29 chr12 33734255 33734325 -110052130 + MLT1G1 LTR MaLR 486 593 -2 508 256 111 56 chr12 33734327 33734561 -110051894 - L2 LINE L2 -71 3242 2996 754 241 21 21 chr12 33734802 33734989 -110051466 - MLT1E2 LTR MaLR 0 654 468 1132 148 0 0 chr12 33735004 33735173 -110051282 - AluSg/x SINE Alu -10 300 132 1137 224 111 28 chr12 33735173 33735582 -110050873 - MLT1E2 LTR MaLR -185 439 1 1825 131 3 34 chr12 33735639 33735930 -110050525 + AluJo SINE Alu 1 282 -30 229 230 176 54 chr12 33736377 33736451 -110050004 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 33736560 33736596 -110049859 + AT_rich Low_complexity Low_complexity 1 36 0 2314 83 24 0 chr12 33736613 33736901 -110049554 - AluSg SINE Alu -10 300 6 1560 179 0 58 chr12 33736915 33737223 -110049232 - AluJo SINE Alu -22 290 1 3786 136 156 113 chr12 33737450 33738023 -110048432 - L1MC3 LINE L1 0 7785 7238 231 319 0 32 chr12 33738023 33738117 -110048338 - MLT1F1 LTR MaLR -442 125 35 3786 136 156 113 chr12 33738117 33738530 -110047925 - L1MC3 LINE L1 -547 7238 6656 1879 149 0 33 chr12 33738530 33738831 -110047624 - AluJo SINE Alu -15 297 7 807 224 0 7 chr12 33738924 33739076 -110047379 + Tigger3(Golem) DNA MER2_type 2866 3016 -13 2106 119 3 23 chr12 33739225 33739528 -110046927 + AluSx SINE Alu 1 297 -15 1506 174 60 28 chr12 33739543 33739825 -110046630 + AluJo SINE Alu 3 293 -19 989 187 0 0 chr12 33739850 33740000 -110046455 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 33740029 33740078 -110046377 + AT_rich Low_complexity Low_complexity 1 49 0 1693 163 30 20 chr12 33740894 33741189 -110045266 + AluJb SINE Alu 5 302 -10 915 179 0 34 chr12 33741472 33741651 -110044804 + AluJb SINE Alu 129 301 -11 290 267 91 79 chr12 33742946 33743111 -110043344 - MIR3 SINE MIR -11 197 31 1083 105 23 18 chr12 33744465 33744636 -110041819 - L1MB7 LINE L1 0 6184 6013 1693 169 26 7 chr12 33745256 33745558 -110040897 + AluJb SINE Alu 2 309 -3 741 205 8 0 chr12 33745558 33745680 -110040775 + AluJb SINE Alu 134 256 -56 348 130 0 29 chr12 33746076 33746145 -110040310 + AluJb SINE Alu 235 301 -1 585 299 116 9 chr12 33746195 33746419 -110040036 - MIR SINE MIR 0 262 15 288 77 0 0 chr12 33746647 33746686 -110039769 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 901 197 0 0 chr12 33746686 33746833 -110039622 - AluJb SINE Alu -32 280 134 1631 223 53 27 chr12 33746833 33746868 -110039587 - L1ME1 LINE L1 -11 6155 6122 2445 81 0 0 chr12 33746868 33747163 -110039292 + AluSx SINE Alu 1 295 -17 1631 223 53 27 chr12 33747163 33747539 -110038916 - L1ME1 LINE L1 -44 6122 5733 321 188 50 40 chr12 33747544 33747645 -110038810 - LTR41 LTR ERVL -16 757 656 1581 147 0 19 chr12 33747645 33747903 -110038552 + AluJb SINE Alu 11 263 -49 595 111 0 0 chr12 33748926 33749007 -110037448 + U5 snRNA snRNA 1 81 -35 2170 117 0 7 chr12 33749015 33749314 -110037141 - AluSc SINE Alu -12 297 1 12090 144 25 31 chr12 33749314 33750665 -110035790 - L1MA3 LINE L1 -354 5951 4593 1936 146 0 0 chr12 33750665 33750945 -110035510 - AluSx SINE Alu -32 280 1 12090 144 25 31 chr12 33750945 33752420 -110034035 - L1MA3 LINE L1 -1712 4593 3059 2195 125 0 6 chr12 33752420 33752731 -110033724 - AluSx SINE Alu -3 309 1 12090 144 25 31 chr12 33752731 33753160 -110033295 - L1MA3 LINE L1 -3246 3059 2629 1998 206 19 45 chr12 33753575 33754046 -110032409 - MLT1C LTR MaLR -3 464 6 2058 131 3 3 chr12 33754141 33754431 -110032024 - AluSx SINE Alu -18 294 5 231 278 28 9 chr12 33754517 33754625 -110031830 + L1MC4 LINE L1 7933 8042 0 773 186 0 0 chr12 33755426 33755550 -110030905 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 33755587 33755738 -110030717 - L1PA3 LINE L1 -3 6152 6002 2495 72 7 3 chr12 33755741 33756283 -110030172 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 33756285 33756473 -110029982 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 33756533 33756568 -110029887 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 33756568 33756687 -110029768 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 33756869 33757290 -110029165 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 33757319 33757634 -110028821 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 33757634 33757750 -110028705 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 33757783 33757911 -110028544 + FLAM_C SINE Alu 10 129 -14 1041 151 6 18 chr12 33757945 33758111 -110028344 + AluSx SINE Alu 1 164 -148 2166 169 22 14 chr12 33759305 33759667 -110026788 + MLT1A1 LTR MaLR 1 365 0 1378 222 67 0 chr12 33759802 33759919 -110026536 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 33759919 33759954 -110026501 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1378 222 67 0 chr12 33759954 33760120 -110026335 + AluJb SINE Alu 109 303 -9 1244 122 0 0 chr12 33760146 33760318 -110026137 + AluSx SINE Alu 140 311 -1 944 181 6 17 chr12 33760595 33760772 -110025683 - FRAM SINE Alu -5 171 1 264 179 128 39 chr12 33760849 33760927 -110025528 + L2 LINE L2 3229 3313 0 1055 164 0 0 chr12 33761242 33761407 -110025048 - FRAM SINE Alu -2 174 10 324 339 0 16 chr12 33761407 33761534 -110024921 - L2 LINE L2 -567 2747 2623 710 79 0 0 chr12 33761534 33761623 -110024832 - AluSx SINE Alu -10 302 214 1088 163 0 0 chr12 33761747 33761913 -110024542 - AluJb SINE Alu -14 298 133 586 154 10 19 chr12 33761944 33762048 -110024407 - MER65A LTR ERV1 0 445 343 299 213 53 75 chr12 33762116 33762210 -110024245 - AluSx SINE Alu -81 219 128 1095 128 7 0 chr12 33763019 33763168 -110023287 - AluSx SINE Alu -162 150 1 35 24 0 0 chr12 33763177 33763219 -110023236 + AT_rich Low_complexity Low_complexity 1 42 0 2323 82 7 7 chr12 33763219 33763524 -110022931 - AluY SINE Alu -6 305 1 645 297 87 45 chr12 33763606 33763963 -110022492 - MLT1K LTR MaLR -18 570 199 1685 162 13 10 chr12 33764461 33764770 -110021685 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 33764817 33764841 -110021614 + AT_rich Low_complexity Low_complexity 1 24 0 1469 184 43 16 chr12 33764874 33765178 -110021277 + AluJb SINE Alu 1 312 0 958 263 4 23 chr12 33765677 33765936 -110020519 - AluJo SINE Alu -31 281 28 290 296 19 105 chr12 33766233 33766309 -110020146 + MIR SINE MIR 73 129 -133 2261 97 0 7 chr12 33766309 33766607 -110019848 + AluSg SINE Alu 1 296 -14 290 296 19 105 chr12 33766607 33766692 -110019763 + MIR SINE MIR 129 220 -42 2191 107 3 3 chr12 33766692 33766990 -110019465 + AluSq SINE Alu 1 298 -15 2126 117 21 0 chr12 33767003 33767294 -110019161 + AluSg SINE Alu 1 297 -13 397 265 0 80 chr12 33767327 33767478 -110018977 + L1MC5 LINE L1 7751 7889 -72 22 0 0 0 chr12 33768086 33768108 -110018347 + GC_rich Low_complexity Low_complexity 1 22 0 253 279 25 13 chr12 33768235 33768314 -110018141 - L2 LINE L2 -670 2644 2565 802 159 0 36 chr12 33768621 33768759 -110017696 + FLAM_A SINE Alu 1 133 0 575 211 163 13 chr12 33768979 33769159 -110017296 + MER33 DNA MER1_type 1 195 -80 263 238 41 25 chr12 33769247 33769369 -110017086 + AluYb8 SINE Alu 18 141 -167 2150 98 0 7 chr12 33769501 33769810 -110016645 - AluSq SINE Alu 0 307 1 23 0 0 0 chr12 33770464 33770487 -110015968 + AT_rich Low_complexity Low_complexity 1 23 0 2276 116 0 0 chr12 33770536 33770837 -110015618 - AluSq SINE Alu -12 301 1 1380 143 0 14 chr12 33771065 33771281 -110015174 - AluJo SINE Alu -95 217 5 358 226 24 0 chr12 33771400 33771484 -110014971 + MER103 DNA DNA 17 102 -64 1849 189 54 76 chr12 33771562 33772113 -110014342 - LTR55 LTR ERV -2 546 8 2118 139 3 0 chr12 33772269 33772570 -110013885 - AluSx SINE Alu -10 302 1 238 241 74 0 chr12 33772636 33772690 -110013765 + Charlie1 DNA MER1_type 1 58 -2703 * 2645 171 44 50 chr12 33772687 33772751 -110013704 + Charlie1 DNA MER1_type 1748 1811 -950 2575 96 30 30 chr12 33772751 33773115 -110013340 + THE1B LTR MaLR 1 364 0 2645 171 44 50 chr12 33773115 33773635 -110012820 + Charlie1 DNA MER1_type 1811 2329 -432 380 141 153 129 chr12 33773669 33773783 -110012672 + Charlie1 DNA MER1_type 2582 2703 -58 2339 84 0 3 chr12 33773783 33774081 -110012374 - AluY SINE Alu -14 297 1 380 141 153 129 chr12 33774081 33774136 -110012319 + Charlie1 DNA MER1_type 2703 2755 -6 1327 196 14 17 chr12 33774342 33774638 -110011817 - AluSx SINE Alu -17 295 1 1218 121 79 47 chr12 33775041 33775214 -110011241 - Tigger4(Zombi) DNA MER2_type 0 2731 2548 1538 190 0 70 chr12 33775214 33775394 -110011061 - AluJb SINE Alu -4 308 160 1931 155 3 7 chr12 33775394 33775698 -110010757 - AluSx SINE Alu -9 303 1 1538 190 0 70 chr12 33775698 33775848 -110010607 - AluJb SINE Alu -152 160 1 1218 121 79 47 chr12 33775848 33775889 -110010566 - Tigger4(Zombi) DNA MER2_type -183 2548 2510 1531 207 8 4 chr12 33775891 33776157 -110010298 - Tigger4(Zombi) DNA MER2_type -2463 268 2 234 295 39 0 chr12 33776159 33776237 -110010218 - MLT1G LTR MaLR -58 491 411 548 192 186 21 chr12 33776336 33776606 -110009849 - MLT1G LTR MaLR -284 306 1 2354 101 0 0 chr12 33776614 33776911 -110009544 - AluSx SINE Alu -15 297 1 381 278 185 29 chr12 33776948 33777294 -110009161 + L1ME4a LINE L1 5656 6055 -66 1078 0 98 0 chr12 33777612 33777734 -110008721 + AluY SINE Alu 1 134 -177 2041 146 7 0 chr12 33777734 33778036 -110008419 + AluSx SINE Alu 1 304 -8 1064 188 81 104 chr12 33778036 33778155 -110008300 - LTR54 LTR ERV1 -38 472 352 1946 144 0 19 chr12 33778155 33778468 -110007987 + AluSx SINE Alu 1 307 -5 1064 188 81 104 chr12 33778468 33778683 -110007772 - LTR54 LTR ERV1 -158 352 146 3240 145 32 0 chr12 33778768 33779264 -110007191 + MER41E LTR ERV1 1 512 0 761 156 28 14 chr12 33779268 33779409 -110007046 - LTR54 LTR ERV1 -367 143 1 187 264 44 77 chr12 33779453 33779544 -110006911 - MIR SINE MIR -12 250 163 454 56 169 0 chr12 33779555 33779626 -110006829 - MER21A LTR ERV1 -27 904 822 865 185 17 29 chr12 33779629 33779802 -110006653 + AluJb SINE Alu 119 289 -23 1301 165 91 8 chr12 33779859 33780102 -110006353 - MER21B LTR ERV1 -138 725 463 873 145 8 0 chr12 33780103 33780234 -110006221 + AluSg/x SINE Alu 146 277 -33 192 77 0 0 chr12 33780234 33780260 -110006195 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2220 102 0 0 chr12 33780261 33780545 -110005910 + AluSc SINE Alu 1 284 -25 2525 162 73 7 chr12 33780552 33780991 -110005464 - MER21B LTR ERV1 -395 468 1 186 143 0 0 chr12 33781020 33781048 -110005407 - MIR SINE MIR -63 145 118 189 0 0 0 chr12 33782515 33782536 -110003919 + (T)n Simple_repeat Simple_repeat 1 21 0 368 264 22 0 chr12 33784425 33784516 -110001939 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 33784533 33784706 -110001749 + CT-rich Low_complexity Low_complexity 2 178 0 1572 140 15 143 chr12 33784720 33784945 -110001510 - AluJo SINE Alu -3 299 131 2476 87 0 0 chr12 33784945 33785256 -110001199 - AluY SINE Alu 0 311 1 1572 140 15 143 chr12 33785256 33785372 -110001083 - AluJo SINE Alu -171 131 2 629 237 98 48 chr12 33785689 33785936 -110000519 + MLT1H1 LTR MaLR 42 281 -261 770 144 72 50 chr12 33786435 33786574 -109999881 - FLAM_C SINE Alu 0 143 2 2239 123 0 0 chr12 33786752 33787053 -109999402 - AluSx SINE Alu -11 301 1 35 24 0 0 chr12 33787062 33787104 -109999351 + AT_rich Low_complexity Low_complexity 1 42 0 2411 88 0 0 chr12 33787104 33787409 -109999046 - AluY SINE Alu -6 305 1 2110 136 3 7 chr12 33787411 33787720 -109998735 - AluSx SINE Alu 0 312 5 370 191 11 157 chr12 33787730 33787908 -109998547 + L1MC5 LINE L1 7765 7916 -45 773 186 0 0 chr12 33788715 33788839 -109997616 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 33788876 33789027 -109997428 - L1PA3 LINE L1 -3 6152 6002 2536 72 6 3 chr12 33789030 33789572 -109996883 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 33789574 33789762 -109996693 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 33789822 33789857 -109996598 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 33789857 33789976 -109996479 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 33790158 33790579 -109995876 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 33790608 33790923 -109995532 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 33790923 33791039 -109995416 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 33791072 33791200 -109995255 + FLAM_C SINE Alu 10 129 -14 416 134 0 16 chr12 33791234 33791473 -109994982 + AluSx SINE Alu 1 308 -1 565 144 63 0 chr12 33791503 33791614 -109994841 + L1MA8 LINE L1 6174 6291 0 2195 167 25 11 chr12 33792636 33792996 -109993459 + MLT1A1 LTR MaLR 1 365 0 1382 223 66 0 chr12 33793131 33793248 -109993207 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 33793248 33793283 -109993172 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1382 223 66 0 chr12 33793283 33793452 -109993003 + AluJb SINE Alu 109 306 -6 1214 134 0 0 chr12 33793475 33793647 -109992808 + AluSg/x SINE Alu 138 309 -1 944 181 6 17 chr12 33793924 33794101 -109992354 - AluJ SINE Alu -5 307 133 264 179 128 39 chr12 33794178 33794256 -109992199 + L2 LINE L2 3229 3313 0 2195 135 0 6 chr12 33794571 33794883 -109991572 - AluSx SINE Alu -2 310 1 39 0 0 0 chr12 33795004 33795043 -109991412 + AT_rich Low_complexity Low_complexity 1 39 0 781 176 48 0 chr12 33795044 33795169 -109991286 - AluJ SINE Alu -181 131 1 355 265 93 12 chr12 33795181 33795343 -109991112 - L1MC/D LINE L1 -2048 5760 5586 2083 128 3 3 chr12 33795459 33795765 -109990690 + AluSg SINE Alu 1 306 -4 207 299 250 20 chr12 33795933 33796137 -109990318 - L2 LINE L2 -218 3054 2804 2091 126 3 3 chr12 33796350 33796644 -109989811 + AluSx SINE Alu 1 294 -18 2002 204 19 45 chr12 33796739 33797210 -109989245 + MLT1C LTR MaLR 6 464 -3 338 0 24 0 chr12 33797531 33797573 -109988882 + (TTG)n Simple_repeat Simple_repeat 2 44 0 854 138 0 0 chr12 33797581 33797697 -109988758 - FLAM_C SINE Alu -26 117 2 2300 117 3 0 chr12 33797838 33798146 -109988309 + AluSx SINE Alu 1 309 -3 563 319 81 39 chr12 33798645 33799002 -109987453 + MLT1K LTR MaLR 199 570 -18 2524 66 0 0 chr12 33799084 33799385 -109987070 + AluY SINE Alu 1 301 -10 798 269 105 61 chr12 33799672 33800178 -109986277 - MLT1K LTR MaLR -4 584 57 2280 105 0 0 chr12 33800275 33800569 -109985886 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 33800670 33801015 -109985440 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 33801278 33801350 -109985105 + MIR3 SINE MIR 133 200 -8 2392 79 7 3 chr12 33801689 33801993 -109984462 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 33802500 33802809 -109983646 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 33803068 33803133 -109983322 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 33803136 33803384 -109983071 + AluY SINE Alu 57 301 -10 2248 99 6 13 chr12 33803395 33803742 -109982713 + AluSx SINE Alu 1 345 0 2018 209 87 27 chr12 33803742 33804292 -109982163 + MER92B LTR ERV1 54 636 0 751 293 35 4 chr12 33804470 33804702 -109981753 - MIR SINE MIR -18 244 6 355 228 105 18 chr12 33804842 33804956 -109981499 + MER34B LTR ERV1 1 124 -441 2955 93 42 9 chr12 33805051 33805096 -109981359 - MLT2A1 LTR ERVL 0 444 402 672 99 0 0 chr12 33805096 33805207 -109981248 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 33805207 33805591 -109980864 - MLT2A1 LTR ERVL -42 402 1 521 266 35 56 chr12 33805591 33805877 -109980578 + MER34B LTR ERV1 286 565 0 1197 249 61 32 chr12 33805878 33806288 -109980167 + MER90 LTR ERV1 106 527 -87 2302 97 13 3 chr12 33806494 33806803 -109979652 - AluSx SINE Alu 0 312 1 780 169 0 0 chr12 33807162 33807292 -109979163 + FRAM SINE Alu 38 167 -9 2468 78 44 0 chr12 33807292 33807636 -109978819 + L1PA11 LINE L1 5814 6172 -2 2239 114 3 0 chr12 33807636 33807934 -109978521 + AluSq SINE Alu 1 299 -14 434 132 44 0 chr12 33807937 33808005 -109978450 - MLT1A2 LTR MaLR -303 71 1 1482 154 4 11 chr12 33808029 33808295 -109978160 - L1MA6 LINE L1 0 6300 6037 2167 112 0 13 chr12 33808309 33808614 -109977841 + AluSx SINE Alu 1 301 -11 1960 123 0 65 chr12 33808818 33808962 -109977493 + AluSx SINE Alu 1 114 -198 2389 103 0 0 chr12 33808962 33809274 -109977181 + AluSx SINE Alu 1 312 0 1960 123 0 65 chr12 33809274 33809454 -109977001 + AluSx SINE Alu 114 304 -8 184 299 72 72 chr12 33809459 33809556 -109976899 - L2 LINE L2 -37 3235 3139 2320 95 3 0 chr12 33809599 33809894 -109976561 - AluSc SINE Alu -13 296 1 2250 85 3 0 chr12 33809961 33810283 -109976172 - AluSp SINE Alu 0 323 1 1306 126 5 0 chr12 33810288 33810479 -109975976 - AluSp SINE Alu -1 312 121 2103 39 111 7 chr12 33810482 33810761 -109975694 - AluY SINE Alu -3 308 1 694 308 53 32 chr12 33810768 33811106 -109975349 + L2 LINE L2 2969 3313 0 1746 145 50 7 chr12 33811778 33812061 -109974394 + AluJo SINE Alu 3 297 -15 4012 139 13 6 chr12 33812306 33812937 -109973518 + MER41B LTR ERV1 1 635 0 206 260 137 0 chr12 33813012 33813085 -109973370 - MIR SINE MIR -67 195 113 690 209 23 0 chr12 33813085 33813214 -109973241 + AluJb SINE Alu 2 133 -179 2571 52 0 7 chr12 33813222 33813528 -109972927 + AluY SINE Alu 1 304 -7 372 333 33 0 chr12 33813652 33813802 -109972653 + MIR3 SINE MIR 11 165 -43 4023 122 63 8 chr12 33813802 33814468 -109971987 + MER39 LTR ERV1 1 703 -4 2362 92 0 10 chr12 33814600 33814903 -109971552 - AluSg SINE Alu -10 300 1 761 138 9 0 chr12 33815233 33815349 -109971106 + AluJb SINE Alu 2 118 -194 189 0 0 0 chr12 33815352 33815373 -109971082 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2197 109 0 14 chr12 33815450 33815744 -109970711 + AluSx SINE Alu 1 290 -22 628 339 111 36 chr12 33815980 33816205 -109970250 - L2 LINE L2 -31 3282 3075 1866 159 21 7 chr12 33816205 33816494 -109969961 - AluJb SINE Alu -19 293 1 628 339 111 36 chr12 33816494 33817100 -109969355 - L2 LINE L2 -238 3075 2403 1978 110 24 14 chr12 33817144 33817483 -109968972 + AluSx SINE Alu 1 312 0 1862 152 7 7 chr12 33817495 33817791 -109968664 + AluJb SINE Alu 1 296 -16 1404 91 0 122 chr12 33817861 33817912 -109968543 + AluSg/x SINE Alu 85 141 -169 2268 120 0 0 chr12 33817912 33818213 -109968242 + AluSx SINE Alu 1 301 -11 1404 91 0 122 chr12 33818213 33818415 -109968040 + AluSg/x SINE Alu 141 307 -3 805 148 78 0 chr12 33818418 33818560 -109967895 + FRAM SINE Alu 1 153 -23 298 285 121 14 chr12 33818641 33818848 -109967607 - L2 LINE L2 -1340 1974 1746 2259 85 44 0 chr12 33819115 33819408 -109967047 - AluSx SINE Alu -6 306 1 2417 95 0 0 chr12 33819458 33819763 -109966692 - AluY SINE Alu -6 305 1 239 252 122 84 chr12 33820303 33820333 -109966122 + MER91C DNA MER1_type 4 31 -109 2483 76 3 0 chr12 33820333 33820634 -109965821 - AluSg SINE Alu -8 302 1 239 252 122 84 chr12 33820634 33820734 -109965721 + MER91C DNA MER1_type 31 139 -1 1439 121 10 0 chr12 33821049 33821248 -109965207 - AluSq SINE Alu -17 296 96 2439 85 3 0 chr12 33823297 33823603 -109962852 - AluSq SINE Alu -6 307 1 241 125 172 0 chr12 33823761 33823825 -109962630 - L1ME4a LINE L1 0 6121 6047 2241 119 0 3 chr12 33824030 33824341 -109962114 - AluSq SINE Alu -3 310 1 1972 145 13 0 chr12 33824399 33824703 -109961752 + AluSg SINE Alu 1 308 -2 2376 55 13 7 chr12 33825043 33825352 -109961103 + AluY SINE Alu 1 311 0 377 181 103 35 chr12 33825422 33825538 -109960917 - MIR SINE MIR -42 220 97 690 193 22 30 chr12 33826134 33826269 -109960186 + MER94 DNA DNA 1 134 0 182 245 0 20 chr12 33826288 33826337 -109960118 + MIR SINE MIR 87 134 -74 975 172 11 17 chr12 33826337 33826517 -109959938 - FRAM SINE Alu -2 174 1 2265 112 0 0 chr12 33826525 33826819 -109959636 - AluSx SINE Alu -18 294 1 1342 175 29 71 chr12 33826822 33827131 -109959324 - AluJb SINE Alu -16 296 1 2434 72 7 3 chr12 33828253 33828557 -109957898 - AluSp SINE Alu -8 305 1 382 314 22 7 chr12 33828634 33828771 -109957684 - MIR SINE MIR -113 149 11 2109 149 36 0 chr12 33828832 33829167 -109957288 - L1PA16 LINE L1 -23 6143 5797 485 272 88 41 chr12 33829538 33829958 -109956497 - L1PA16 LINE L1 -438 5725 5255 1995 155 20 0 chr12 33830734 33831037 -109955418 + AluJb SINE Alu 1 309 -3 709 62 134 0 chr12 33831130 33831227 -109955228 + MER83 LTR ERV1 1 110 -338 * 1958 127 66 91 chr12 33831226 33831549 -109954906 + MER83 LTR ERV1 50 362 -86 2631 59 0 0 chr12 33831549 33831855 -109954600 + AluY SINE Alu 1 306 -5 1958 127 66 91 chr12 33831855 33831940 -109954515 + MER83 LTR ERV1 362 448 0 220 229 0 0 chr12 33832688 33832736 -109953719 + A-rich Low_complexity Low_complexity 4 51 0 317 203 0 16 chr12 33832772 33832836 -109953619 - MER112 DNA MER1_type -189 71 9 4619 56 40 20 chr12 33833328 33834341 -109952114 + MER11A LTR ERVK 1 1266 0 1961 151 10 7 chr12 33834414 33834712 -109951743 + AluJb SINE Alu 1 299 -13 2108 123 0 33 chr12 33835055 33835355 -109951100 + AluJb SINE Alu 1 290 -22 315 0 0 0 chr12 33836070 33836105 -109950350 + (CA)n Simple_repeat Simple_repeat 2 36 0 254 346 9 19 chr12 33836319 33836426 -109950029 - L1ME LINE L1 -533 5588 5483 1662 119 131 8 chr12 33836432 33836692 -109949763 - AluSg1 SINE Alu -17 292 1 205 183 33 17 chr12 33836699 33836759 -109949696 + T-rich Low_complexity Low_complexity 4 64 0 421 301 27 0 chr12 33836952 33837098 -109949357 - L1ME LINE L1 -897 5462 5313 1273 151 0 0 chr12 33837105 33837323 -109949132 - L1MA4 LINE L1 -11 6289 6072 2480 191 60 35 chr12 33838128 33838693 -109947762 - L1P LINE L1 -5557 589 11 880 289 29 7 chr12 33838981 33839289 -109947166 + L1ME LINE L1 5485 5799 -371 206 143 41 20 chr12 33839349 33839398 -109947057 + (TA)n Simple_repeat Simple_repeat 2 51 0 2403 185 25 34 chr12 33839480 33839647 -109946808 - L1MB5 LINE L1 -1 6173 6006 2276 108 3 0 chr12 33839647 33839944 -109946511 + AluSq SINE Alu 2 299 -14 2403 185 25 34 chr12 33839944 33840328 -109946127 - L1MB5 LINE L1 -168 6006 5627 524 202 11 0 chr12 33840342 33840431 -109946024 + AluJ/FLAM SINE Alu 2 91 -221 345 158 118 53 chr12 33840433 33840509 -109945946 + HERVL40 LTR ERVL 1067 1147 -4383 3782 261 63 26 chr12 33841040 33841518 -109944937 + HERVL40 LTR ERVL 3181 3640 -1890 414 0 0 0 chr12 33841518 33841564 -109944891 + (CA)n Simple_repeat Simple_repeat 2 47 0 3782 261 63 26 chr12 33841564 33842184 -109944271 + HERVL40 LTR ERVL 3640 4319 -1211 354 191 0 128 chr12 33842193 33842263 -109944192 + MER58A DNA MER1_type 1 58 -283 2202 117 0 3 chr12 33842263 33842562 -109943893 + AluSx SINE Alu 2 299 -13 354 191 0 128 chr12 33842562 33842585 -109943870 + MER58A DNA MER1_type 58 82 -142 234 62 0 0 chr12 33842593 33842625 -109943830 + (CA)n Simple_repeat Simple_repeat 2 33 0 871 262 62 51 chr12 33842625 33842759 -109943696 + HERVL40 LTR ERVL 3675 3818 -1712 1784 50 0 0 chr12 33842759 33842961 -109943494 - AluY SINE Alu -73 238 37 871 262 62 51 chr12 33842961 33843073 -109943382 + HERVL40 LTR ERVL 3818 3927 -1603 681 222 22 0 chr12 33843078 33843213 -109943242 + MER58A DNA MER1_type 87 224 0 555 259 7 14 chr12 33843216 33843355 -109943100 + HERVL40 LTR ERVL 4328 4465 -1065 2230 166 60 114 chr12 33843422 33844002 -109942453 - MER44D DNA MER2_type -1 604 1 523 285 47 99 chr12 33844269 33844672 -109941783 - MER110 LTR ERV1 -4 487 106 2114 119 0 11 chr12 33845069 33845386 -109941069 - AluSx SINE Alu 0 314 1 2266 94 3 10 chr12 33845545 33845844 -109940611 - AluSp SINE Alu -12 301 5 284 253 51 0 chr12 33846194 33846273 -109940182 - LTR37B LTR ERV1 -385 83 1 237 65 0 0 chr12 33846353 33846384 -109940071 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 843 167 7 0 chr12 33846404 33846542 -109939913 - AluJo SINE Alu -173 139 1 1767 107 41 24 chr12 33847120 33847411 -109939044 - AluSx SINE Alu -14 298 3 715 112 0 0 chr12 33847412 33847510 -109938945 - AluJo SINE Alu -176 136 39 894 228 31 24 chr12 33847688 33847942 -109938513 - MIR SINE MIR 0 262 7 295 296 15 45 chr12 33848917 33849049 -109937406 - MIR SINE MIR -14 248 121 229 316 0 0 chr12 33849311 33849390 -109937065 - L2 LINE L2 -3 3269 3191 253 287 52 9 chr12 33849590 33849705 -109936750 + MER65B LTR ERV1 3 122 -409 2269 78 13 32 chr12 33849705 33850013 -109936442 + AluSg SINE Alu 1 302 -8 1268 232 68 0 chr12 33850452 33850732 -109935723 - MER58B DNA MER1_type -26 315 17 462 167 167 37 chr12 33850759 33850775 -109935680 - MER45 DNA AcHobo -1459 122 109 2124 92 21 7 chr12 33850775 33851058 -109935397 + AluSq SINE Alu 13 299 -14 462 167 167 37 chr12 33851058 33851149 -109935306 - MER45 DNA AcHobo -1472 109 1 2049 87 0 30 chr12 33851733 33851998 -109934457 - AluSg SINE Alu -53 257 1 21 36 0 0 chr12 33852094 33852122 -109934333 + AT_rich Low_complexity Low_complexity 1 28 0 764 300 94 47 chr12 33852457 33852708 -109933747 - LTR33 LTR ERVL 0 521 283 4504 86 60 24 chr12 33852708 33852871 -109933584 - LTR8 LTR ERV1 0 691 535 2266 106 17 0 chr12 33852871 33853173 -109933282 - AluSx SINE Alu -5 307 1 4504 86 60 24 chr12 33853173 33853676 -109932779 - LTR8 LTR ERV1 -156 535 1 764 300 94 47 chr12 33853676 33853891 -109932564 - LTR33 LTR ERVL -238 283 33 2206 105 10 10 chr12 33854007 33854312 -109932143 - AluSx SINE Alu -7 305 1 243 146 0 0 chr12 33854547 33854588 -109931867 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 3756 94 6 6 chr12 33854602 33855113 -109931342 - MER9 LTR ERVK 0 511 1 931 280 121 61 chr12 33855360 33855712 -109930743 - L1MEd LINE L1 -5381 738 408 2348 98 0 22 chr12 33855712 33856030 -109930425 - AluY SINE Alu 0 311 1 931 280 121 61 chr12 33856030 33856060 -109930395 - L1MEd LINE L1 -5711 408 381 2492 91 0 0 chr12 33856060 33856368 -109930087 - AluSx SINE Alu -4 308 1 931 280 121 61 chr12 33856368 33856473 -109929982 - L1MEd LINE L1 -5738 381 221 231 167 42 0 chr12 33856486 33856534 -109929921 - L1MEd LINE L1 -6042 77 28 2186 109 3 3 chr12 33856796 33857090 -109929365 - AluSx SINE Alu -18 294 1 2206 100 3 3 chr12 33857529 33857829 -109928626 - AluSx SINE Alu -12 300 1 434 242 97 0 chr12 33857964 33858088 -109928367 + L2 LINE L2 2483 2618 -696 746 231 57 57 chr12 33858092 33858373 -109928082 - MER34 LTR ERV1 -5 537 257 4179 123 3 10 chr12 33858381 33858997 -109927458 - LTR9 LTR ERV1 0 612 1 2270 77 0 68 chr12 33859124 33859448 -109927007 + AluSx SINE Alu 1 302 -10 542 231 30 59 chr12 33859448 33859510 -109926945 - MER34 LTR ERV1 -378 164 102 2425 135 94 2 chr12 33859510 33859924 -109926531 + LTR47A LTR ERVL 1 452 0 542 231 30 59 chr12 33859924 33860030 -109926425 - MER34 LTR ERV1 -440 102 1 434 242 23 45 chr12 33860031 33860163 -109926292 + L2 LINE L2 2616 2744 -570 3664 109 43 6 chr12 33860167 33860701 -109925754 - MER41A LTR ERV1 0 554 1 1992 146 44 0 chr12 33860705 33861000 -109925455 + AluSx SINE Alu 1 308 -4 1387 125 37 148 chr12 33861000 33861351 -109925104 - Tigger1 DNA MER2_type -2106 312 1 418 151 116 0 chr12 33861351 33861437 -109925018 - L1MB8 LINE L1 -255 5923 5828 848 126 86 26 chr12 33861437 33861588 -109924867 - MER2 DNA MER2_type 0 345 186 1103 105 149 6 chr12 33861588 33861769 -109924686 + AluSg/x SINE Alu 85 291 -21 2303 93 0 35 chr12 33861779 33861895 -109924560 + AluSg SINE Alu 1 120 -190 2500 68 7 0 chr12 33861895 33862202 -109924253 + AluY SINE Alu 1 309 -2 2303 93 0 35 chr12 33862202 33862395 -109924060 + AluSg SINE Alu 120 299 -11 756 171 171 0 chr12 33862397 33862549 -109923906 - MER2 DNA MER2_type -167 178 1 2001 157 6 14 chr12 33862549 33862894 -109923561 - L1MB8 LINE L1 -355 5829 5488 2123 105 0 10 chr12 33862895 33863191 -109923264 - AluSx SINE Alu 0 312 20 533 267 39 17 chr12 33863203 33863383 -109923072 - MIR SINE MIR -65 197 14 632 171 23 54 chr12 33863794 33863923 -109922532 + AluJo SINE Alu 11 135 -177 1273 189 5 0 chr12 33863923 33864145 -109922310 + AluJb SINE Alu 85 307 -5 1885 153 0 0 chr12 33864145 33864460 -109921995 + AluSx SINE Alu 1 315 0 442 238 79 38 chr12 33865085 33865321 -109921134 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 33865365 33865389 -109921066 + (A)n Simple_repeat Simple_repeat 1 24 0 1576 146 3 93 chr12 33865389 33865710 -109920745 + AluJb SINE Alu 1 292 -20 566 226 9 0 chr12 33865905 33866020 -109920435 + MLT2B1 LTR ERVL 1 116 -404 1109 102 0 7 chr12 33866022 33866169 -109920286 + AluSq/x SINE Alu 3 148 -165 1968 155 3 3 chr12 33866442 33866752 -109919703 + AluJb SINE Alu 1 310 -2 2321 93 10 3 chr12 33866765 33867076 -109919379 + AluSq SINE Alu 1 313 0 609 183 131 22 chr12 33867076 33867213 -109919242 + LTR34 LTR ERV1 548 699 0 645 229 66 6 chr12 33867923 33868089 -109918366 + MER51D LTR ERV1 461 636 -21 253 83 125 42 chr12 33868107 33868155 -109918300 - Charlie8 DNA MER1_type -2159 258 207 1129 69 0 0 chr12 33868155 33868286 -109918169 + AluSq/x SINE Alu 2 132 -180 2406 75 0 0 chr12 33868289 33868583 -109917872 + AluSg SINE Alu 1 294 -16 600 189 0 9 chr12 33868586 33868692 -109917763 - AluJo/FLAM SINE Alu -187 125 21 603 167 125 17 chr12 33869051 33869171 -109917284 + FLAM_C SINE Alu 1 133 0 338 136 150 23 chr12 33869216 33869350 -109917105 - AluJb SINE Alu -4 298 114 2147 80 62 3 chr12 33869921 33870210 -109916245 + AluSq SINE Alu 1 306 -7 1086 181 0 46 chr12 33870418 33870634 -109915821 + MER2 DNA MER2_type 1 206 -139 253 150 33 33 chr12 33870744 33870804 -109915651 - L2 LINE L2 -75 3238 3179 201 319 0 0 chr12 33870797 33870844 -109915611 - L2 LINE L2 -64 3208 3162 * 341 233 187 99 chr12 33871289 33871491 -109914964 - MER102b DNA MER1_type -1088 340 108 2311 65 16 56 chr12 33871491 33871813 -109914642 - AluSx SINE Alu -3 309 1 341 233 187 99 chr12 33871813 33871872 -109914583 - MER102b DNA MER1_type -1320 108 56 26 74 0 0 chr12 33872446 33872500 -109913955 + GC_rich Low_complexity Low_complexity 1 54 0 289 250 0 0 chr12 33872660 33872728 -109913727 - L2 LINE L2 -27 3245 3178 25 0 0 0 chr12 33872728 33872753 -109913702 + AT_rich Low_complexity Low_complexity 1 25 0 2398 98 0 0 chr12 33873863 33874168 -109912287 - AluSg SINE Alu -5 305 1 464 269 103 17 chr12 33874579 33874754 -109911701 + MIR SINE MIR 71 260 -2 304 337 32 21 chr12 33874807 33874997 -109911458 - L2 LINE L2 -573 2741 2550 236 261 0 45 chr12 33875686 33875774 -109910681 - L1MA9 LINE L1 0 6312 6229 670 213 15 84 chr12 33875774 33876047 -109910408 - LTR34 LTR ERV1 0 699 446 801 183 52 16 chr12 33876556 33876747 -109909708 + LTR47A LTR ERVL 214 411 -41 1218 163 15 4 chr12 33876754 33877100 -109909355 - L1P5 LINE L1 -677 5474 5126 695 198 2 25 chr12 33877100 33877171 -109909284 + L1ME1 LINE L1 5747 5818 -333 2231 104 0 17 chr12 33877171 33877470 -109908985 + AluSc SINE Alu 1 294 -15 695 198 2 25 chr12 33877470 33877571 -109908884 + L1ME1 LINE L1 5818 5915 -236 340 259 60 9 chr12 33877595 33877711 -109908744 + L1ME1 LINE L1 5893 6014 -152 287 170 19 0 chr12 33877776 33877829 -109908626 - FRAM/FAM SINE Alu -117 49 1 21 36 0 0 chr12 33877829 33877857 -109908598 + AT_rich Low_complexity Low_complexity 1 28 0 2190 121 7 3 chr12 33878153 33878459 -109907996 - AluSq SINE Alu -6 307 1 1269 277 40 70 chr12 33878859 33879287 -109907168 + L2 LINE L2 1874 2279 -1035 1410 175 17 55 chr12 33879287 33879579 -109906876 - AluJo SINE Alu -31 281 1 1269 277 40 70 chr12 33879579 33879778 -109906677 + L2 LINE L2 2279 2482 -832 21 36 0 0 chr12 33879876 33879904 -109906551 + AT_rich Low_complexity Low_complexity 1 28 0 1110 202 0 32 chr12 33879930 33880207 -109906248 + L1M4 LINE L1 4924 5191 -955 330 115 0 0 chr12 33880268 33880320 -109906135 + (TG)n Simple_repeat Simple_repeat 1 52 0 652 221 138 37 chr12 33880391 33880689 -109905766 - L1ME3A LINE L1 -208 5962 5635 523 186 0 0 chr12 33880876 33880962 -109905493 - FAM SINE Alu -21 164 79 1787 164 111 39 chr12 33880985 33881419 -109905036 + LTR10A LTR ERV1 82 546 -63 513 194 43 0 chr12 33881432 33881525 -109904930 - AluJo SINE Alu -90 222 126 2226 102 3 3 chr12 33881529 33881853 -109904602 - AluSc SINE Alu 0 309 1 2322 101 0 0 chr12 33881882 33882180 -109904275 - AluSc SINE Alu -11 298 1 448 250 32 36 chr12 33882200 33882407 -109904048 - L1ME3A LINE L1 -741 5423 5217 393 288 117 24 chr12 33882408 33882613 -109903842 + L2 LINE L2 2688 2911 -403 930 143 0 0 chr12 33882942 33883068 -109903387 + FLAM_C SINE Alu 1 126 -17 932 169 53 5 chr12 33883407 33883596 -109902859 - L1MB7 LINE L1 0 6184 5987 685 244 124 31 chr12 33883710 33883968 -109902487 + MLT1L LTR MaLR 1 282 -333 208 156 67 22 chr12 33884055 33884100 -109902355 - L2 LINE L2 -5 3267 3221 289 170 19 0 chr12 33884288 33884341 -109902114 + MLT1L LTR MaLR 341 394 -221 247 218 55 0 chr12 33884378 33884433 -109902022 + MLT1L LTR MaLR 465 522 -93 221 222 16 0 chr12 33884449 33884512 -109901943 + CT-rich Low_complexity Low_complexity 3 66 0 1186 179 9 22 chr12 33884512 33884736 -109901719 - AluJb SINE Alu -7 305 85 1893 238 89 26 chr12 33884826 33885334 -109901121 + MLT1E LTR MaLR 1 540 -53 46 16 0 16 chr12 33885385 33885433 -109901022 + AT_rich Low_complexity Low_complexity 1 49 -14 2473 62 0 7 chr12 33885433 33885754 -109900701 + AluSx SINE Alu 1 312 0 46 16 0 16 chr12 33885754 33885769 -109900686 + AT_rich Low_complexity Low_complexity 49 63 0 322 258 11 22 chr12 33885851 33885940 -109900515 - MER46C DNA MER2_type -249 89 2 268 321 28 0 chr12 33885941 33886047 -109900408 + MIR SINE MIR 153 261 -1 270 233 14 0 chr12 33886082 33886155 -109900300 + MIR SINE MIR 74 147 -61 2261 118 0 0 chr12 33886656 33886960 -109899495 - AluSx SINE Alu 0 312 9 225 252 37 65 chr12 33887169 33887276 -109899179 - L2 LINE L2 -749 2565 2462 543 259 60 15 chr12 33887284 33887485 -109898970 - L2 LINE L2 0 3313 3104 370 274 0 10 chr12 33887536 33887638 -109898817 + MER46C DNA MER2_type 224 324 -14 221 348 0 0 chr12 33887643 33887712 -109898743 - MIR SINE MIR -108 154 86 2404 167 29 29 chr12 33888087 33888437 -109898018 + MER66A LTR ERV1 27 380 -98 1951 138 3 0 chr12 33888437 33888744 -109897711 + AluSx SINE Alu 1 308 0 2404 167 29 29 chr12 33888744 33888841 -109897614 + MER66A LTR ERV1 379 475 -3 186 71 0 0 chr12 33888916 33888944 -109897511 + (TG)n Simple_repeat Simple_repeat 2 29 0 633 197 98 0 chr12 33889071 33889193 -109897262 - FRAM SINE Alu -40 136 3 2496 76 0 10 chr12 33889216 33889530 -109896925 - AluY SINE Alu 0 311 1 2338 102 0 0 chr12 33889530 33889823 -109896632 - AluSx SINE Alu -18 294 1 2073 133 0 10 chr12 33889824 33890133 -109896322 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 33890148 33890169 -109896286 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr12 33890180 33890226 -109896229 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1659 157 39 25 chr12 33890227 33890508 -109895947 - AluJo SINE Alu -27 285 1 226 0 0 56 chr12 33890512 33890548 -109895907 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2325 86 0 0 chr12 33890552 33890842 -109895613 - AluY SINE Alu -21 290 1 2208 98 7 0 chr12 33890984 33891271 -109895184 + AluSq SINE Alu 1 289 -24 872 121 0 0 chr12 33891307 33891423 -109895032 + AluSq/x SINE Alu 1 116 -197 2082 176 31 5 chr12 33891489 33891880 -109894575 - MER57A LTR ERV1 0 403 3 22 0 0 0 chr12 33893649 33893671 -109892784 + AT_rich Low_complexity Low_complexity 1 22 0 2106 117 0 23 chr12 33893671 33893978 -109892477 - AluSx SINE Alu -2 310 11 2426 85 0 3 chr12 33893994 33894299 -109892156 - AluSq SINE Alu -9 304 1 669 196 0 43 chr12 33894333 33894471 -109891984 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33894473 33894527 -109891928 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 1467 98 10 0 chr12 33894970 33895164 -109891291 + AluSc SINE Alu 103 298 -11 249 128 0 0 chr12 33895216 33895255 -109891200 + Alu SINE Alu 1 39 -264 2268 104 3 0 chr12 33895256 33895554 -109890901 + AluSq SINE Alu 1 299 -14 1185 133 0 0 chr12 33895554 33895719 -109890736 + AluSg/x SINE Alu 134 298 -14 2446 112 37 49 chr12 33895719 33896199 -109890256 - MER4E LTR ERV1 -316 326 1 345 177 73 10 chr12 33896210 33896306 -109890149 - L1MC4 LINE L1 -501 7541 7440 1952 142 13 13 chr12 33896326 33896636 -109889819 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 33896686 33896781 -109889674 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 33896782 33897070 -109889385 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 33897070 33897230 -109889225 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 33897296 33897425 -109889030 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 33897428 33897562 -109888893 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 33897766 33898072 -109888383 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 33898379 33898620 -109887835 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 33898622 33898720 -109887735 - LTR30 LTR ERV1 -80 642 544 5851 132 58 117 chr12 33898720 33900083 -109886372 - pTR5 LTR ERV1 -413 2025 743 2851 141 24 12 chr12 33900209 33900798 -109885657 + MER4E LTR ERV1 3 766 0 369 238 68 122 chr12 33900903 33900943 -109885512 - MLT1J LTR MaLR -195 316 275 2612 127 53 14 chr12 33900943 33901376 -109885079 + LTR7 LTR ERV1 1 450 0 369 238 68 122 chr12 33901376 33901619 -109884836 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 33901619 33901655 -109884800 + (TG)n Simple_repeat Simple_repeat 2 37 0 6198 61 14 13 chr12 33901742 33902368 -109884087 + MER4E LTR ERV1 1 630 -136 2487 57 10 3 chr12 33902368 33902669 -109883786 + AluY SINE Alu 1 303 -8 6198 61 14 13 chr12 33902669 33902807 -109883648 + MER4E LTR ERV1 630 766 0 861 255 81 43 chr12 33902874 33903270 -109883185 + LTR16A1 LTR ERVL 47 457 0 391 188 89 0 chr12 33903277 33903378 -109883077 + L1MC/D LINE L1 5667 5776 -2032 2218 108 0 3 chr12 33903458 33903755 -109882700 - AluSq SINE Alu -17 296 1 747 189 77 0 chr12 33903760 33903903 -109882552 - LTR8 LTR ERV1 -537 154 1 2496 65 0 0 chr12 33903941 33904235 -109882220 + AluY SINE Alu 1 294 -17 307 203 29 0 chr12 33904367 33904436 -109882019 + LTR10A LTR ERV1 182 252 -357 1941 134 72 33 chr12 33904476 33904835 -109881620 + LTR10A LTR ERV1 176 548 -61 2595 39 3 10 chr12 33904867 33905175 -109881280 + AluY SINE Alu 1 306 -5 1860 166 23 0 chr12 33905191 33905493 -109880962 + AluJb SINE Alu 1 309 -3 1650 145 78 28 chr12 33906286 33906421 -109880034 + AluSq SINE Alu 1 128 -185 2096 101 4 0 chr12 33906421 33906732 -109879723 + AluSg SINE Alu 1 312 0 1650 145 78 28 chr12 33906732 33906877 -109879578 + AluSq SINE Alu 128 296 -17 392 54 0 18 chr12 33906880 33906936 -109879519 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 340 264 113 13 chr12 33906958 33907117 -109879338 + L1M4 LINE L1 3089 3263 -2883 546 366 67 20 chr12 33907138 33907589 -109878866 + L1M4 LINE L1 3374 3845 -2301 1348 102 6 0 chr12 33907655 33907832 -109878623 + AluY SINE Alu 38 215 -96 1945 109 127 15 chr12 33908182 33908342 -109878113 - LTR29 LTR ERV1 -244 378 237 3342 130 27 4 chr12 33908342 33908827 -109877628 - LOR1a LTR ERV1 0 497 2 1945 109 127 15 chr12 33908827 33909006 -109877449 - LTR29 LTR ERV1 -385 237 1 411 288 105 48 chr12 33909011 33909240 -109877215 + L1MEd LINE L1 599 840 -5279 818 153 8 0 chr12 33909345 33909469 -109876986 + AluSq/x SINE Alu 11 135 -178 1810 119 98 3 chr12 33909469 33909754 -109876701 + AluSx SINE Alu 1 312 0 638 217 25 12 chr12 33909781 33909942 -109876513 + L1MEd LINE L1 946 1108 -5011 808 268 161 28 chr12 33910030 33910501 -109875954 - LTR1B LTR ERV1 -237 589 56 353 267 46 38 chr12 33910528 33910659 -109875796 + L1MEd LINE L1 1105 1236 -4883 * 462 277 89 78 chr12 33910654 33911009 -109875446 + HAL1b LINE L1 165 514 -834 1705 181 0 30 chr12 33911009 33911313 -109875142 + AluJb SINE Alu 6 300 -12 462 277 89 78 chr12 33911313 33911650 -109874805 + HAL1b LINE L1 514 865 -483 2051 108 10 16 chr12 33911709 33912014 -109874441 + AluSg SINE Alu 1 303 -7 180 0 0 0 chr12 33913067 33913087 -109873368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2364 164 96 30 chr12 33913264 33913794 -109872661 - LTR49 LTR ERV1 -30 565 1 343 289 52 77 chr12 33913965 33914008 -109872447 + L1MEd LINE L1 2721 2764 -3365 2095 129 0 7 chr12 33914008 33914317 -109872138 + AluSx SINE Alu 1 307 -5 343 289 52 77 chr12 33914317 33914598 -109871857 + L1MEd LINE L1 2764 3037 -3092 1616 203 85 91 chr12 33914648 33915165 -109871290 - LTR8A LTR ERV1 0 727 214 562 158 40 0 chr12 33916070 33916171 -109870284 - FAM SINE Alu -13 172 68 2130 109 0 7 chr12 33916171 33916464 -109869991 - AluSx SINE Alu -16 296 6 3720 199 64 13 chr12 33916477 33917352 -109869103 - L1MCb LINE L1 -4851 1194 275 639 203 0 16 chr12 33917355 33917478 -109868977 - MER57A LTR ERV1 -25 378 258 1569 135 24 105 chr12 33917494 33917828 -109868627 - AluYb8 SINE Alu -11 307 1 923 243 102 49 chr12 33917828 33918133 -109868322 - L1MCb LINE L1 -6094 470 150 1021 192 9 45 chr12 33918145 33918369 -109868086 - AluJo SINE Alu -12 300 85 735 233 72 57 chr12 33918413 33918675 -109867780 - L2 LINE L2 0 3313 3048 451 272 154 5 chr12 33920384 33920579 -109865876 - LTR33 LTR ERVL -8 513 290 380 213 111 8 chr12 33920579 33920713 -109865742 - L1ME4a LINE L1 -261 5860 5713 354 195 12 12 chr12 33921186 33921268 -109865187 + L1MEd LINE L1 2239 2320 -3809 * 1380 198 3 32 chr12 33921265 33921525 -109864930 + L1MEd LINE L1 3587 3838 -2291 1909 171 59 102 chr12 33921525 33921805 -109864650 - MLT1D LTR MaLR 0 505 257 2156 125 0 3 chr12 33921805 33922100 -109864355 + AluSg SINE Alu 1 294 -16 1909 171 59 102 chr12 33922100 33922346 -109864109 - MLT1D LTR MaLR -248 257 2 1380 198 3 32 chr12 33922346 33922398 -109864057 + L1MEd LINE L1 3838 3890 -2239 336 134 72 0 chr12 33922398 33922473 -109863982 + AluS SINE Alu 5 62 -239 1147 106 33 11 chr12 33922675 33922855 -109863600 - L1MA4 LINE L1 -300 6000 5817 369 93 0 0 chr12 33922855 33922909 -109863546 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 773 173 0 0 chr12 33922909 33923019 -109863436 - AluJb SINE Alu -30 282 173 2240 125 0 0 chr12 33923055 33923359 -109863096 - AluSg SINE Alu -5 305 2 1529 99 15 73 chr12 33923360 33923476 -109862979 - L1MA4 LINE L1 -471 5829 5708 2256 110 0 0 chr12 33923476 33923768 -109862687 - AluSc SINE Alu -17 292 1 1529 99 15 73 chr12 33923768 33923923 -109862532 - L1MA4 LINE L1 -592 5708 5574 299 247 43 0 chr12 33924031 33924124 -109862331 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 1938 150 3 26 chr12 33924373 33924680 -109861775 + AluJb SINE Alu 1 300 -12 38 68 0 0 chr12 33924788 33924861 -109861594 + AT_rich Low_complexity Low_complexity 1 73 0 1991 150 3 3 chr12 33925141 33925441 -109861014 - AluJb SINE Alu -12 300 1 267 259 36 22 chr12 33926804 33926943 -109859512 - L1M4 LINE L1 -3704 2442 2302 * 1705 272 41 21 chr12 33926930 33927766 -109858689 - L1ME3 LINE L1 -274 5888 5035 3131 94 22 20 chr12 33927863 33928320 -109858135 - L1PA10 LINE L1 -106 6062 5605 2075 46 0 0 chr12 33928519 33928758 -109857697 - L1PA8 LINE L1 -1 6171 5933 4101 98 11 14 chr12 33928758 33929544 -109856911 - L1P3 LINE L1 -4523 1938 1153 292 237 114 9 chr12 33929554 33929668 -109856787 - L1P3 LINE L1 -5660 801 676 654 264 103 47 chr12 33929915 33930422 -109856033 + MER41D-int LTR ERV1 7195 7729 -27 1117 157 0 0 chr12 33930427 33930599 -109855856 + AluSg/x SINE Alu 132 303 -7 3115 198 11 2 chr12 33930632 33931184 -109855271 + MER41D LTR ERV1 1 557 0 471 234 16 8 chr12 33931859 33931987 -109854468 - MIR SINE MIR 0 262 134 1000 106 0 0 chr12 33931998 33932130 -109854325 - FLAM_C SINE Alu -11 132 1 351 275 0 8 chr12 33932135 33932235 -109854220 - MIR SINE MIR -61 147 52 2309 91 0 26 chr12 33932382 33932548 -109853907 - AluSx SINE Alu -13 299 143 2287 111 0 0 chr12 33932548 33932854 -109853601 - AluSx SINE Alu -4 308 3 2309 91 0 26 chr12 33932854 33932994 -109853461 - AluSx SINE Alu -169 143 1 718 268 30 44 chr12 33933145 33933440 -109853015 - AluJb SINE Alu -11 301 11 297 0 0 0 chr12 33933677 33933710 -109852745 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2031 130 0 18 chr12 33933710 33933995 -109852460 - AluSx SINE Alu -32 280 1 36 23 0 0 chr12 33934060 33934103 -109852352 + AT_rich Low_complexity Low_complexity 1 43 0 1639 207 34 0 chr12 33934288 33934640 -109851815 + L1ME LINE L1 4071 4434 -1712 2405 90 0 6 chr12 33934654 33934965 -109851490 + AluSg SINE Alu 1 309 -1 747 127 82 30 chr12 33935014 33935148 -109851307 + FRAM SINE Alu 36 176 0 3084 196 29 23 chr12 33935178 33935914 -109850541 + L1ME LINE L1 4521 5260 -886 821 119 0 0 chr12 33935915 33936033 -109850422 + AluY SINE Alu 1 118 -193 638 225 29 14 chr12 33936196 33936334 -109850121 - MIR SINE MIR -82 180 41 358 310 51 19 chr12 33936641 33936799 -109849656 + L1ME LINE L1 5560 5722 -448 984 189 100 0 chr12 33936895 33937085 -109849370 + L1ME LINE L1 5552 5760 -406 3298 106 0 11 chr12 33937097 33937552 -109848903 - L1PB1 LINE L1 -1 6150 5701 2189 100 21 0 chr12 33937904 33938195 -109848260 + AluSx SINE Alu 1 297 -15 558 302 156 16 chr12 33939273 33939581 -109846874 - MARNA DNA Mariner -28 558 208 2256 210 74 67 chr12 33940193 33940368 -109846087 + MER21B LTR ERV1 101 273 -590 2232 116 0 19 chr12 33940368 33940686 -109845769 + AluSx SINE Alu 1 312 0 2256 210 74 67 chr12 33940686 33941216 -109845239 + MER21B LTR ERV1 273 811 -52 22 0 0 0 chr12 33941406 33941428 -109845027 + AT_rich Low_complexity Low_complexity 1 22 0 1283 170 5 0 chr12 33941428 33941640 -109844815 + AluJb SINE Alu 87 299 -13 2179 94 3 38 chr12 33941928 33942247 -109844208 - AluSg SINE Alu 0 310 3 841 164 7 14 chr12 33942358 33942498 -109843957 + FLAM_C SINE Alu 1 139 -4 486 223 7 4 chr12 33942618 33942746 -109843709 + MSTC LTR MaLR 220 379 -48 2392 91 0 0 chr12 33942751 33943047 -109843408 + AluSq SINE Alu 1 296 -17 885 173 45 45 chr12 33943111 33943313 -109843142 - AluJo SINE Alu -13 299 98 729 191 17 0 chr12 33943837 33943976 -109842479 - FLAM_C SINE Alu 0 141 1 1761 186 7 0 chr12 33944042 33944333 -109842122 - AluJb SINE Alu -19 293 1 2350 106 0 0 chr12 33944337 33944639 -109841816 - AluSq SINE Alu -11 302 1 858 266 200 10 chr12 33944994 33945420 -109841035 - L2 LINE L2 -3 3310 2798 2220 123 3 0 chr12 33945442 33945742 -109840713 + AluSx SINE Alu 1 301 -11 1997 167 45 8 chr12 33945765 33946118 -109840337 - MER47A DNA MER2_type 0 366 1 1018 184 6 6 chr12 33946274 33946448 -109840007 - AluJb SINE Alu -2 310 137 1551 128 27 0 chr12 33946682 33946901 -109839554 + AluSg SINE Alu 1 225 -85 292 167 37 0 chr12 33947030 33947084 -109839371 - PRIMA41-int LTR ERV1 -1577 6179 6124 2220 132 0 0 chr12 33947195 33947505 -109838950 + AluSx SINE Alu 3 312 0 206 204 0 19 chr12 33947505 33947559 -109838896 + GA-rich Low_complexity Low_complexity 4 56 0 2131 97 7 0 chr12 33947724 33948003 -109838452 + AluSx SINE Alu 1 281 -31 417 39 0 0 chr12 33948003 33948054 -109838401 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 957 102 0 0 chr12 33948358 33948485 -109837970 - AluSc SINE Alu -182 127 1 1791 88 33 62 chr12 33948486 33948881 -109837574 + MER4E LTR ERV1 538 766 0 2768 177 101 30 chr12 33949581 33949692 -109836763 + L1MB7 LINE L1 5492 5594 -590 1877 89 85 14 chr12 33949692 33949973 -109836482 + AluY SINE Alu 1 301 -10 2768 177 101 30 chr12 33949973 33950505 -109835950 + L1MB7 LINE L1 5594 6181 -3 256 308 96 31 chr12 33950531 33950851 -109835604 + L1M4 LINE L1 4152 4515 -1631 1682 167 7 3 chr12 33950851 33951144 -109835311 + AluSx SINE Alu 1 294 -18 256 308 96 31 chr12 33951144 33951300 -109835155 + L1M4 LINE L1 4515 4659 -1487 301 200 31 0 chr12 33951438 33951503 -109834952 + L1MC4a LINE L1 5783 5849 -1959 834 159 0 0 chr12 33951513 33951639 -109834816 + AluSq/x SINE Alu 1 126 -186 877 163 13 8 chr12 33951641 33951670 -109834785 + GA-rich Low_complexity Low_complexity 1 28 -523 1947 113 7 45 chr12 33951670 33951979 -109834476 + AluSx SINE Alu 1 297 -15 877 163 13 8 chr12 33951979 33952190 -109834265 + GA-rich Low_complexity Low_complexity 28 551 0 331 159 8 76 chr12 33952211 33952343 -109834112 + GA-rich Low_complexity Low_complexity 1 123 0 3469 123 37 4 chr12 33952351 33952861 -109833594 + MER1A DNA MER1_type 1 527 0 322 210 62 0 chr12 33952861 33952942 -109833513 + L1MC4a LINE L1 5856 5941 -1867 2307 84 0 0 chr12 33952943 33953239 -109833216 + AluY SINE Alu 1 296 -15 186 103 0 0 chr12 33953253 33953282 -109833173 + (TG)n Simple_repeat Simple_repeat 2 30 0 1609 186 10 0 chr12 33953440 33953736 -109832719 + AluJb SINE Alu 1 299 -13 2166 82 32 0 chr12 33953775 33954055 -109832400 - AluY SINE Alu -22 289 1 1075 145 0 0 chr12 33954573 33954745 -109831710 - AluJb SINE Alu -6 306 135 2252 80 0 3 chr12 33955170 33955458 -109830997 + AluY SINE Alu 1 287 -24 2132 108 0 3 chr12 33955670 33955966 -109830489 + AluSx SINE Alu 1 295 -17 2446 62 0 3 chr12 33956016 33956321 -109830134 + AluY SINE Alu 1 304 -7 2485 206 10 20 chr12 33956432 33956942 -109829513 - MLT1D LTR MaLR 0 505 1 368 275 0 0 chr12 33957202 33957282 -109829173 - MLT1J LTR MaLR -333 178 99 186 213 64 0 chr12 33958411 33958458 -109827997 + MER5B DNA MER1_type 128 177 -1 2243 98 0 0 chr12 33958584 33958889 -109827566 - AluY SINE Alu -6 305 1 1909 116 0 0 chr12 33959221 33959489 -109826966 + AluSx SINE Alu 7 274 -38 840 132 7 21 chr12 33959489 33959633 -109826822 + AluSg/x SINE Alu 163 304 -8 776 62 0 18 chr12 33959668 33959780 -109826675 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 1605 139 4 26 chr12 33959806 33960072 -109826383 - AluJo SINE Alu -52 260 1 1469 172 0 15 chr12 33960800 33961073 -109825382 + AluJb SINE Alu 21 289 -23 620 219 0 0 chr12 33961075 33961189 -109825266 + AluJo/FLAM SINE Alu 2 115 -197 1936 140 0 0 chr12 33961190 33961482 -109824973 - AluSx SINE Alu -10 302 11 202 239 0 0 chr12 33961540 33961586 -109824869 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1491 155 43 25 chr12 33961589 33961867 -109824588 - AluJo SINE Alu -29 283 1 226 0 0 56 chr12 33961871 33961907 -109824548 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2155 87 3 0 chr12 33961911 33962200 -109824255 - AluY SINE Alu -21 290 1 2085 98 7 0 chr12 33962342 33962629 -109823826 + AluSq SINE Alu 1 289 -24 818 121 0 0 chr12 33962665 33962781 -109823674 + AluSq/x SINE Alu 1 116 -197 2069 176 31 5 chr12 33962849 33963240 -109823215 - MER57A LTR ERV1 0 403 3 189 392 32 6 chr12 33963999 33964157 -109822298 + L2 LINE L2 1217 1378 -1936 22 0 0 0 chr12 33965008 33965030 -109821425 + AT_rich Low_complexity Low_complexity 1 22 0 1983 117 0 23 chr12 33965030 33965337 -109821118 - AluSx SINE Alu -2 310 11 2296 85 0 3 chr12 33965353 33965658 -109820797 - AluSq SINE Alu -9 304 1 675 196 0 43 chr12 33965692 33965830 -109820625 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33965832 33965886 -109820569 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 3771 125 67 96 chr12 33966229 33967035 -109819420 + LTR1 LTR ERV1 3 785 0 749 173 0 8 chr12 33967705 33967832 -109818623 - FLAM_C SINE Alu -16 127 2 254 337 163 13 chr12 33967924 33968230 -109818225 - L2 LINE L2 -979 2335 1984 2080 179 127 54 chr12 33968387 33968883 -109817572 + MLT1F LTR MaLR 3 534 -8 770 175 16 0 chr12 33969075 33969201 -109817254 + FLAM_C SINE Alu 2 129 -14 213 218 0 0 chr12 33969201 33969279 -109817176 + (TA)n Simple_repeat Simple_repeat 1 78 0 345 305 6 90 chr12 33970323 33970500 -109815955 + MIR SINE MIR 47 208 -54 2002 117 14 0 chr12 33970502 33970792 -109815663 - AluSq SINE Alu -19 294 1 1566 128 32 110 chr12 33970843 33971188 -109815267 - AluYb8 SINE Alu 0 318 1 2213 100 0 0 chr12 33971313 33971613 -109814842 + AluSg1 SINE Alu 1 300 -9 426 255 99 21 chr12 33971886 33972027 -109814428 - L1ME4a LINE L1 -1 6120 5969 2365 82 0 0 chr12 33972095 33972400 -109814055 - AluY SINE Alu -5 306 2 1944 105 49 0 chr12 33972402 33972687 -109813768 - AluSq SINE Alu -14 299 1 2271 82 3 3 chr12 33972737 33973040 -109813415 - AluSc SINE Alu -6 303 1 2122 85 3 0 chr12 33973107 33973429 -109813026 - AluSp SINE Alu 0 323 1 1237 126 5 0 chr12 33973434 33973625 -109812830 - AluSp SINE Alu -1 312 121 2051 43 111 0 chr12 33973625 33973905 -109812550 - AluY SINE Alu 0 311 1 819 308 53 32 chr12 33973912 33974250 -109812205 + L2 LINE L2 2969 3313 0 1636 145 50 7 chr12 33974922 33975205 -109811250 + AluJo SINE Alu 3 297 -15 4010 139 13 6 chr12 33975450 33976081 -109810374 + MER41B LTR ERV1 1 635 0 247 250 167 52 chr12 33976156 33976228 -109810227 - MIR SINE MIR -67 195 108 1427 184 6 58 chr12 33976228 33976366 -109810089 + AluJb SINE Alu 1 145 -167 2349 65 0 0 chr12 33976366 33976659 -109809796 + AluY SINE Alu 1 293 -18 1427 184 6 58 chr12 33976659 33976847 -109809608 + AluJb SINE Alu 145 310 -2 247 250 167 52 chr12 33976847 33976870 -109809585 - MIR SINE MIR -154 108 89 688 193 22 30 chr12 33976915 33977050 -109809405 - MER94 DNA DNA 0 134 1 433 181 103 35 chr12 33977646 33977762 -109808693 + MIR SINE MIR 97 220 -42 2250 55 13 7 chr12 33977832 33978141 -109808314 - AluY SINE Alu 0 311 1 1841 148 10 0 chr12 33978481 33978786 -109807669 - AluSg SINE Alu -2 308 1 2116 119 0 3 chr12 33978844 33979155 -109807300 + AluSq SINE Alu 1 310 -3 231 125 172 0 chr12 33979360 33979424 -109807031 + L1ME4a LINE L1 6047 6121 0 2311 85 3 0 chr12 33979582 33979888 -109806567 + AluSq SINE Alu 1 307 -6 1359 121 10 0 chr12 33981937 33982136 -109804319 + AluSq SINE Alu 96 296 -17 288 252 122 84 chr12 33982451 33982551 -109803904 - MER91C DNA MER1_type -1 139 31 2351 76 3 0 chr12 33982551 33982852 -109803603 + AluSg SINE Alu 1 302 -8 288 252 122 84 chr12 33982852 33982882 -109803573 - MER91C DNA MER1_type -109 31 4 4036 138 13 6 chr12 33983606 33984237 -109802218 - MER41B LTR ERV1 0 635 1 1501 152 53 11 chr12 33984482 33984765 -109801690 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 33985437 33985775 -109800680 - L2 LINE L2 0 3313 2969 2051 43 111 0 chr12 33985782 33986062 -109800393 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 33986062 33986253 -109800202 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 33986258 33986576 -109799879 + AluSp SINE Alu 1 319 0 2210 94 3 0 chr12 33986643 33986941 -109799514 + AluSq SINE Alu 1 299 -14 1216 124 0 0 chr12 33986941 33987119 -109799336 + AluSg/x SINE Alu 134 311 -1 2426 115 37 47 chr12 33987119 33987598 -109798857 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33987609 33987705 -109798750 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33987725 33988035 -109798420 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33988085 33988180 -109798275 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33988181 33988469 -109797986 + AluY SINE Alu 1 288 -23 482 258 0 13 chr12 33988472 33988627 -109797828 + (CATA)n Simple_repeat Simple_repeat 4 156 0 809 171 0 0 chr12 33988693 33988822 -109797633 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33988825 33988959 -109797496 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33989163 33989469 -109796986 + LTR68 LTR ERV1 405 736 -4 1410 108 83 129 chr12 33989776 33990017 -109796438 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33990019 33990117 -109796338 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33990117 33991480 -109794975 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33991606 33992195 -109794260 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33992300 33992340 -109794115 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33992340 33992773 -109793682 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33992773 33993016 -109793439 - MLT1J LTR MaLR -236 275 47 285 29 0 0 chr12 33993016 33993050 -109793405 + (TG)n Simple_repeat Simple_repeat 2 35 0 5909 65 13 12 chr12 33993137 33993763 -109792692 + MER4E LTR ERV1 1 630 -136 2384 53 10 3 chr12 33993763 33994063 -109792392 + AluY SINE Alu 1 302 -9 5909 65 13 12 chr12 33994063 33994201 -109792254 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33994268 33994664 -109791791 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33994671 33994772 -109791683 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33994852 33995145 -109791310 - AluSx SINE Alu -17 295 1 2206 74 3 3 chr12 33995179 33995463 -109790992 - AluSx SINE Alu -17 295 12 234 264 299 0 chr12 33995482 33995569 -109790886 - MLT1H LTR MaLR -386 163 51 929 220 47 91 chr12 33995911 33996007 -109790448 - Charlie2 DNA MER1_type -93 2769 2670 2006 111 0 4 chr12 33996007 33996286 -109790169 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33996286 33996306 -109790149 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 929 220 47 91 chr12 33996306 33996601 -109789854 - Charlie2 DNA MER1_type -191 2671 2403 2367 70 0 0 chr12 33996601 33996902 -109789553 - AluY SINE Alu -10 301 1 929 220 47 91 chr12 33996902 33997022 -109789433 - Charlie2 DNA MER1_type -459 2403 2279 931 186 15 15 chr12 33997168 33997372 -109789083 - AluSx SINE Alu -100 212 9 1356 190 158 14 chr12 33997424 33997855 -109788600 - L1MC4 LINE L1 -1 8041 7549 2459 45 2 134 chr12 33997855 33998251 -109788204 - MER4E LTR ERV1 0 766 423 2123 98 7 0 chr12 33998252 33998548 -109787907 + AluSc SINE Alu 1 298 -11 231 93 111 19 chr12 33998566 33998600 -109787855 + Alu SINE Alu 6 44 -255 255 128 0 0 chr12 33998600 33998639 -109787816 + Alu SINE Alu 1 39 -264 2143 104 3 0 chr12 33998640 33998938 -109787517 + AluSq SINE Alu 1 299 -14 1117 133 0 0 chr12 33998938 33999103 -109787352 + AluSg/x SINE Alu 134 298 -14 2434 112 37 49 chr12 33999103 33999583 -109786872 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33999594 33999690 -109786765 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33999710 34000020 -109786435 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 34000070 34000165 -109786290 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 34000166 34000454 -109786001 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 34000454 34000614 -109785841 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 34000680 34000809 -109785646 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 34000812 34000946 -109785509 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 34001150 34001456 -109784999 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 34001763 34002004 -109784451 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 34002006 34002104 -109784351 - LTR30 LTR ERV1 -80 642 544 5984 132 58 117 chr12 34002104 34003467 -109782988 - pTR5 LTR ERV1 -413 2025 743 2845 141 24 12 chr12 34003593 34004182 -109782273 + MER4E LTR ERV1 3 766 0 362 238 68 122 chr12 34004287 34004327 -109782128 - MLT1J LTR MaLR -195 316 275 2463 127 53 14 chr12 34004327 34004760 -109781695 + LTR7 LTR ERV1 1 450 0 362 238 68 122 chr12 34004760 34005003 -109781452 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 34005003 34005039 -109781416 + (TG)n Simple_repeat Simple_repeat 2 37 0 5927 65 13 12 chr12 34005126 34005752 -109780703 + MER4E LTR ERV1 1 630 -136 2512 57 10 3 chr12 34005752 34006053 -109780402 + AluY SINE Alu 1 303 -8 5927 65 13 12 chr12 34006053 34006191 -109780264 + MER4E LTR ERV1 630 766 0 870 248 86 48 chr12 34006258 34006654 -109779801 + LTR16A1 LTR ERVL 47 457 0 381 188 89 0 chr12 34006661 34006762 -109779693 + L1MC/D LINE L1 5667 5776 -2032 2304 96 7 0 chr12 34006842 34007135 -109779320 - AluSx SINE Alu -17 295 1 2448 78 3 0 chr12 34007169 34007463 -109778992 - AluSx SINE Alu -17 295 1 37 23 0 0 chr12 34007466 34007510 -109778945 + AT_rich Low_complexity Low_complexity 1 44 0 2031 138 7 3 chr12 34007510 34007800 -109778655 + AluJb SINE Alu 1 291 -21 2312 94 0 10 chr12 34007863 34008171 -109778284 + AluY SINE Alu 1 305 -6 298 285 121 14 chr12 34008438 34008645 -109777810 + L2 LINE L2 1746 1974 -1340 781 153 76 0 chr12 34008724 34008868 -109777587 - AluJo/FRAM SINE Alu -11 291 137 1321 91 0 138 chr12 34008871 34009073 -109777382 - AluSg/x SINE Alu -7 303 141 2268 120 0 0 chr12 34009073 34009374 -109777081 - AluSx SINE Alu -11 301 1 1321 91 0 138 chr12 34009374 34009425 -109777030 - AluSg/x SINE Alu -169 141 85 1862 152 7 7 chr12 34009495 34009791 -109776664 - AluJb SINE Alu -16 296 1 1978 110 24 14 chr12 34009803 34010142 -109776313 - AluSx SINE Alu 0 312 1 628 339 111 36 chr12 34010186 34010792 -109775663 + L2 LINE L2 2403 3075 -238 1866 159 21 7 chr12 34010792 34011081 -109775374 + AluJb SINE Alu 1 293 -19 628 339 111 36 chr12 34011081 34011306 -109775149 + L2 LINE L2 3075 3282 -31 2192 97 7 0 chr12 34011415 34011713 -109774742 - AluY SINE Alu -11 300 1 1164 123 6 0 chr12 34011853 34012015 -109774440 + AluSc SINE Alu 127 289 -20 1928 143 7 10 chr12 34012023 34012323 -109774132 + AluJo SINE Alu 6 304 -8 217 383 45 13 chr12 34012332 34012486 -109773969 + L2 LINE L2 2915 3073 -199 201 232 29 14 chr12 34012550 34012619 -109773836 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 545 226 26 17 chr12 34012625 34012740 -109773715 + MER58A DNA MER1_type 1 116 0 277 102 0 153 chr12 34012737 34012758 -109773697 + MER58A DNA MER1_type 174 197 -2223 * 2245 120 0 0 chr12 34012758 34013057 -109773398 - AluSq SINE Alu -14 299 1 277 102 0 153 chr12 34013057 34013094 -109773361 + MER58A DNA MER1_type 197 223 -1 541 256 100 6 chr12 34013203 34013363 -109773092 - MIR SINE MIR -41 221 47 409 65 32 16 chr12 34013388 34013450 -109773005 - Alu SINE Alu -4 297 235 1688 201 92 38 chr12 34013488 34013966 -109772489 + L1MC4 LINE L1 7213 7716 -326 2040 120 28 0 chr12 34014011 34014302 -109772153 + AluSx SINE Alu 1 299 -13 925 254 133 59 chr12 34014313 34014717 -109771738 + MLT1H LTR MaLR 73 515 -34 2069 99 11 14 chr12 34014717 34015039 -109771416 - AluSg SINE Alu 0 321 1 925 254 133 59 chr12 34015039 34015077 -109771378 + MLT1H LTR MaLR 515 549 0 2334 114 0 9 chr12 34015370 34015685 -109770770 - AluSx SINE Alu 0 312 1 1786 156 58 0 chr12 34016263 34016558 -109769897 - AluJb SINE Alu 0 312 1 362 288 69 56 chr12 34017849 34018155 -109768300 - MER68 LTR ERV1 -72 490 181 1649 168 33 7 chr12 34018486 34018802 -109767653 - AluSx SINE Alu 0 325 3 2515 65 0 0 chr12 34019091 34019383 -109767072 + AluSq SINE Alu 1 292 -21 2198 114 0 10 chr12 34019400 34019698 -109766757 + AluSx SINE Alu 3 297 -15 2040 159 15 40 chr12 34019769 34020164 -109766291 - Tigger1 DNA MER2_type -15 2403 2019 6227 149 37 27 chr12 34020166 34021692 -109764763 - L1PB2 LINE L1 -3 6148 4637 2644 52 0 0 chr12 34021692 34021999 -109764456 - AluY SINE Alu -4 307 1 6227 149 37 27 chr12 34021999 34022271 -109764184 - L1PB2 LINE L1 -1514 4637 4369 305 62 21 0 chr12 34022271 34022319 -109764136 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6227 149 37 27 chr12 34022319 34022627 -109763828 - L1PB2 LINE L1 -1782 4369 4019 6018 112 28 50 chr12 34022629 34023406 -109763049 - Tigger1 DNA MER2_type -376 2042 1250 1800 166 3 7 chr12 34023406 34023695 -109762760 + AluJb SINE Alu 1 288 -24 6018 112 28 50 chr12 34023695 34023798 -109762657 - Tigger1 DNA MER2_type -1168 1250 1183 2099 148 0 0 chr12 34023798 34024101 -109762354 - AluSx SINE Alu -9 303 1 6018 112 28 50 chr12 34024101 34024208 -109762247 - Tigger1 DNA MER2_type -1235 1183 1075 2228 106 0 0 chr12 34024328 34024647 -109761808 + AluSx SINE Alu 1 319 0 2185 106 3 10 chr12 34024651 34024975 -109761480 + AluSq SINE Alu 1 313 0 1091 183 50 5 chr12 34024976 34025178 -109761277 + MER61E LTR ERV1 355 565 -4 515 273 67 64 chr12 34025191 34025447 -109761008 - MER68 LTR ERV1 -158 447 148 6409 150 5 24 chr12 34025778 34026153 -109760302 + L1PB2 LINE L1 4125 4506 -1645 2138 124 0 0 chr12 34026153 34026470 -109759985 + AluSx SINE Alu 1 312 0 6409 150 5 24 chr12 34026470 34027007 -109759448 + L1PB2 LINE L1 4506 5052 -1099 2272 89 17 0 chr12 34027007 34027309 -109759146 + AluSx SINE Alu 6 312 0 6409 150 5 24 chr12 34027309 34027352 -109759103 + L1PB2 LINE L1 5052 5094 -1057 2133 136 0 0 chr12 34027352 34027647 -109758808 + AluSg SINE Alu 1 295 -15 6409 150 5 24 chr12 34027647 34028761 -109757694 + L1PB2 LINE L1 5094 6151 0 1879 158 3 13 chr12 34028774 34029072 -109757383 + AluSx SINE Alu 1 295 -17 1620 172 61 11 chr12 34029218 34029497 -109756958 - AluSx SINE Alu -19 293 1 921 156 0 0 chr12 34029497 34029632 -109756823 - AluSq/x SINE Alu -177 135 1 851 190 41 10 chr12 34029730 34029936 -109756519 - MER61D LTR ERV1 -17 750 338 2138 123 0 43 chr12 34030981 34031307 -109755148 + AluSx SINE Alu 1 312 0 279 0 0 0 chr12 34031450 34031481 -109754974 + (TG)n Simple_repeat Simple_repeat 2 32 0 1964 133 30 0 chr12 34031642 34031952 -109754503 - AluSc SINE Alu 0 318 1 749 256 96 41 chr12 34032036 34032329 -109754126 - Charlie2 DNA MER1_type -2553 309 1 2050 106 0 14 chr12 34032814 34033098 -109753357 - AluSx SINE Alu 0 312 33 2234 83 24 3 chr12 34033108 34033397 -109753058 - AluSc SINE Alu -14 295 1 2059 123 9 25 chr12 34033803 34034119 -109752336 + AluSx SINE Alu 1 311 -1 2444 65 0 36 chr12 34034190 34034499 -109751956 - AluY SINE Alu -13 298 1 2123 84 0 75 chr12 34034502 34034834 -109751621 - AluSx SINE Alu -5 307 1 1867 170 73 3 chr12 34035183 34035524 -109750931 - MLT1A1 LTR MaLR 0 365 1 545 242 45 13 chr12 34035874 34036031 -109750424 + MIR SINE MIR 35 196 -66 254 289 13 13 chr12 34036043 34036119 -109750336 - MIR SINE MIR -183 79 4 1656 179 0 34 chr12 34036140 34036436 -109750019 + AluJo SINE Alu 1 286 -26 1215 90 0 13 chr12 34036707 34036862 -109749593 - AluSg SINE Alu -153 157 5 1662 170 16 42 chr12 34037833 34038023 -109748432 - AluJo SINE Alu -14 298 117 207 0 0 0 chr12 34038023 34038046 -109748409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1662 170 16 42 chr12 34038046 34038161 -109748294 - AluJo SINE Alu -195 117 1 429 124 0 112 chr12 34038161 34038250 -109748205 + Charlie5 DNA MER1_type 2505 2583 -29 2125 111 10 10 chr12 34038309 34038606 -109747849 - AluSg SINE Alu -13 297 1 882 21 0 0 chr12 34038637 34038734 -109747721 - AluYb8 SINE Alu -68 250 154 384 135 0 0 chr12 34038738 34038962 -109747493 + AluJ/FRAM SINE Alu 230 453 0 1075 223 9 4 chr12 34038974 34039203 -109747252 + AluJo SINE Alu 14 243 -69 508 85 0 73 chr12 34039260 34039342 -109747113 - AluSg SINE Alu -230 80 5 414 247 69 57 chr12 34039389 34039721 -109746734 - L1M4 LINE L1 -814 5332 4997 2246 62 0 106 chr12 34039908 34040248 -109746207 - AluSc SINE Alu -5 304 1 353 297 0 7 chr12 34040789 34040927 -109745528 - L1M4 LINE L1 -1602 4544 4408 914 204 0 0 chr12 34041027 34041189 -109745266 + FRAM SINE Alu 1 161 -15 248 214 0 0 chr12 34041361 34041403 -109745052 - L1MC4 LINE L1 -1148 6894 6853 2200 125 0 3 chr12 34041410 34041721 -109744734 - AluSg SINE Alu 0 310 1 1114 228 91 51 chr12 34041730 34042061 -109744394 + MER92A LTR ERV1 1 348 -64 2058 104 119 6 chr12 34042061 34042398 -109744057 + THE1C LTR MaLR 1 375 0 1114 228 91 51 chr12 34042398 34042417 -109744038 + MER92A LTR ERV1 348 365 -47 963 129 14 7 chr12 34042439 34042579 -109743876 + AluSq/x SINE Alu 1 141 -172 2070 122 3 24 chr12 34042623 34042978 -109743477 + AluSx SINE Alu 1 312 0 312 176 0 108 chr12 34042991 34043093 -109743362 - L1MC5 LINE L1 -1161 6800 6710 838 251 54 63 chr12 34043453 34043516 -109742939 - LTR40b LTR ERVL -1 461 399 2318 100 0 3 chr12 34043516 34043816 -109742639 - AluSx SINE Alu -13 299 1 838 251 54 63 chr12 34043816 34044086 -109742369 - LTR40b LTR ERVL -63 399 131 234 0 0 0 chr12 34044579 34044605 -109741850 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2224 117 7 0 chr12 34045189 34045489 -109740966 + AluSp SINE Alu 1 302 -11 683 125 265 0 chr12 34045494 34045630 -109740825 + AluSg/x SINE Alu 129 300 -9 2395 74 10 0 chr12 34045687 34045986 -109740469 - AluY SINE Alu -9 302 1 1726 73 43 0 chr12 34045986 34046218 -109740237 + MER41A LTR ERV1 313 554 0 5111 130 58 3 chr12 34046303 34047063 -109739392 + MER41A-int LTR ERV1 1 802 -5144 7985 127 50 32 chr12 34047063 34047107 -109739348 + MER41A-int LTR ERV1 2291 2333 -2682 2034 161 0 0 chr12 34047107 34047417 -109739038 - AluSx SINE Alu -2 310 1 7985 127 50 32 chr12 34047417 34048822 -109737633 + MER41A-int LTR ERV1 2333 3766 -1249 * 8906 100 29 7 chr12 34048820 34049905 -109736550 + MER41A-int LTR ERV1 4666 5784 -162 2077 113 0 7 chr12 34049905 34050213 -109736242 - AluSx SINE Alu 0 306 1 8906 100 29 7 chr12 34050213 34050378 -109736077 + MER41A-int LTR ERV1 5784 5944 -2 3922 113 11 0 chr12 34050378 34050926 -109735529 + MER41A LTR ERV1 1 554 0 741 198 117 25 chr12 34050926 34051124 -109735331 + L1MB4 LINE L1 5960 6174 -6 263 173 0 0 chr12 34051155 34051207 -109735248 + L1MB8 LINE L1 6122 6173 -5 410 283 142 31 chr12 34051871 34052097 -109734358 + Charlie2 DNA MER1_type 75 325 -2457 1157 196 20 12 chr12 34052101 34052351 -109734104 + Charlie2 DNA MER1_type 1857 2108 -754 2222 193 38 39 chr12 34052352 34052930 -109733525 - MER92B LTR ERV1 -1 635 1 2267 95 0 3 chr12 34052935 34053247 -109733208 - AluSx SINE Alu 0 311 1 256 200 290 0 chr12 34053265 34053365 -109733090 + Charlie2 DNA MER1_type 2147 2275 -587 21 0 0 0 chr12 34054094 34054115 -109732340 + AT_rich Low_complexity Low_complexity 1 21 0 2223 106 20 0 chr12 34054201 34054493 -109731962 - AluSq SINE Alu -13 300 3 2305 102 0 0 chr12 34054778 34055071 -109731384 - AluSg SINE Alu -17 293 1 1003 211 53 94 chr12 34055311 34055429 -109731026 + Charlie2 DNA MER1_type 2279 2400 -462 2443 73 3 0 chr12 34055429 34055729 -109730726 + AluY SINE Alu 1 301 -10 1003 211 53 94 chr12 34055729 34056024 -109730431 + Charlie2 DNA MER1_type 2400 2706 -156 180 0 0 0 chr12 34056024 34056044 -109730411 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2141 108 0 4 chr12 34056044 34056323 -109730132 - AluSg SINE Alu -32 278 1 1003 211 53 94 chr12 34056323 34056419 -109730036 + Charlie2 DNA MER1_type 2704 2769 -93 302 217 239 94 chr12 34056761 34056854 -109729601 + MLT1H LTR MaLR 51 129 -420 2295 91 0 16 chr12 34056854 34057190 -109729265 + AluSq SINE Alu 1 313 0 302 217 239 94 chr12 34057190 34057234 -109729221 + MLT1H LTR MaLR 129 208 -341 2259 85 0 4 chr12 34057259 34057570 -109728885 - AluSg SINE Alu 0 316 7 886 213 46 0 chr12 34057620 34057817 -109728638 + L1MD3 LINE L1 7782 7987 -8 2568 106 19 3 chr12 34058025 34058394 -109728061 - THE1C LTR MaLR 0 375 1 2597 193 30 8 chr12 34058592 34059121 -109727334 + L1MC4a LINE L1 7268 7808 0 439 183 39 19 chr12 34059209 34059313 -109727142 + MER5B DNA MER1_type 68 173 -5 1226 290 47 34 chr12 34059577 34060218 -109726237 - L1ME3 LINE L1 -211 5951 5303 2150 126 7 7 chr12 34060221 34060531 -109725924 - AluSx SINE Alu -2 310 1 612 221 32 11 chr12 34060531 34060721 -109725734 - L1ME3 LINE L1 -834 5312 5119 21 36 0 0 chr12 34060773 34060801 -109725654 + AT_rich Low_complexity Low_complexity 1 28 0 2530 74 0 3 chr12 34060897 34061207 -109725248 + AluY SINE Alu 1 309 -2 1693 176 3 23 chr12 34061311 34061618 -109724837 + AluJo SINE Alu 1 301 -11 1305 92 0 0 chr12 34061662 34061825 -109724630 + AluSg/x SINE Alu 144 306 -6 2348 51 0 64 chr12 34061827 34062140 -109724315 + AluY SINE Alu 1 293 -18 1975 230 27 34 chr12 34062150 34062813 -109723642 - L1MC/D LINE L1 -753 5393 5038 263 71 24 0 chr12 34062813 34062855 -109723600 + MADE1 DNA Mariner 2 44 -36 2122 94 7 44 chr12 34062884 34063181 -109723274 - AluSx SINE Alu -26 286 1 311 301 48 6 chr12 34063207 34063373 -109723082 - L1MC/D LINE L1 -1116 5030 4858 866 143 0 8 chr12 34063687 34063820 -109722635 + FLAM_A SINE Alu 2 133 0 2344 91 0 3 chr12 34063893 34064191 -109722264 + AluSg1 SINE Alu 1 297 -12 2280 207 35 42 chr12 34064260 34064557 -109721898 + L1M4 LINE L1 4263 4561 -1585 1721 170 0 53 chr12 34064557 34064697 -109721758 + AluJo SINE Alu 1 147 -165 2171 121 0 16 chr12 34064697 34065011 -109721444 + AluSx SINE Alu 1 309 -3 1721 170 0 53 chr12 34065011 34065188 -109721267 + AluJo SINE Alu 147 301 -11 2280 207 35 42 chr12 34065188 34065372 -109721083 + L1M4 LINE L1 4561 4740 -1406 2089 113 38 0 chr12 34065372 34065663 -109720792 + AluSx SINE Alu 1 302 -10 2280 207 35 42 chr12 34065663 34065817 -109720638 + L1M4 LINE L1 4740 4894 -1252 949 185 42 16 chr12 34065822 34066011 -109720444 - MER93b LTR ERV1 -168 205 12 2197 110 0 0 chr12 34066013 34066326 -109720129 - AluSx SINE Alu 0 313 1 360 222 111 16 chr12 34066348 34066474 -109719981 - MIR SINE MIR -103 159 22 1746 161 40 7 chr12 34066623 34066922 -109719533 - AluJb SINE Alu -3 309 1 723 183 124 112 chr12 34066984 34067340 -109719115 + LTR37A LTR ERV1 3 362 -64 279 0 0 0 chr12 34067508 34067539 -109718916 + (CA)n Simple_repeat Simple_repeat 2 32 0 4697 181 24 23 chr12 34067666 34068526 -109717929 - MER21B LTR ERV1 -2 861 1 2511 68 0 0 chr12 34068715 34069022 -109717433 - AluY SINE Alu -4 307 1 2432 77 0 10 chr12 34069024 34069334 -109717121 - AluY SINE Alu -4 307 1 2313 104 10 0 chr12 34069335 34069634 -109716821 - AluSx SINE Alu -10 302 1 239 204 0 0 chr12 34069853 34069907 -109716548 - AluSp/q SINE Alu -68 235 182 3115 160 22 61 chr12 34069907 34070544 -109715911 - LTR9 LTR ERV1 0 612 1 1186 151 0 11 chr12 34070546 34070731 -109715724 - AluJb SINE Alu -129 183 1 475 202 11 51 chr12 34071126 34071209 -109715246 + MER34 LTR ERV1 11 70 -472 4068 189 50 18 chr12 34071209 34072008 -109714447 - LTR1B LTR ERV1 -1 825 1 475 202 11 51 chr12 34072008 34072075 -109714380 + MER34 LTR ERV1 70 138 -404 938 182 6 0 chr12 34072075 34072240 -109714215 - AluJb SINE Alu -6 306 141 1063 169 25 108 chr12 34072243 34072254 -109714201 + MER34B LTR ERV1 113 123 -442 2404 68 0 17 chr12 34072254 34072549 -109713906 - AluY SINE Alu -19 292 3 1063 169 25 108 chr12 34072549 34072816 -109713639 + MER34B LTR ERV1 123 368 -197 260 272 63 7 chr12 34072819 34072922 -109713533 - LTR23 LTR ERV1 -14 738 331 333 308 19 0 chr12 34073648 34073752 -109712703 + GA-rich Low_complexity Low_complexity 2 107 0 834 156 0 8 chr12 34073934 34074062 -109712393 + FLAM_C SINE Alu 1 127 -16 25 0 0 0 chr12 34074062 34074087 -109712368 + AT_rich Low_complexity Low_complexity 1 25 0 304 252 58 0 chr12 34074171 34074274 -109712181 + MER34B LTR ERV1 359 467 -98 2312 52 3 24 chr12 34074276 34074588 -109711867 + AluY SINE Alu 1 306 0 2473 72 3 19 chr12 34074603 34074921 -109711534 + AluSp SINE Alu 1 313 0 371 209 36 45 chr12 34074929 34075039 -109711416 + MER34 LTR ERV1 431 539 -3 913 260 63 85 chr12 34075265 34075864 -109710591 - PABL_B LTR ERV1 0 667 82 377 192 173 77 chr12 34076125 34076281 -109710174 + MLT1H LTR MaLR 1 171 -378 5011 150 32 16 chr12 34077280 34077590 -109708865 - MER4D LTR ERV1 -8 895 591 2540 60 3 22 chr12 34077590 34077906 -109708549 + AluY SINE Alu 1 310 -1 5011 150 32 16 chr12 34077906 34078476 -109707979 - MER4D LTR ERV1 -312 591 1 320 226 199 77 chr12 34078636 34078817 -109707638 + MLT1H LTR MaLR 350 552 -3 2250 115 0 3 chr12 34079131 34079436 -109707019 - AluSq SINE Alu -9 304 1 41 36 0 0 chr12 34079506 34079561 -109706894 + AT_rich Low_complexity Low_complexity 1 55 0 2319 101 0 0 chr12 34079569 34079866 -109706589 - AluSx SINE Alu -15 297 1 286 240 0 27 chr12 34080012 34080087 -109706368 - MIR SINE MIR -1 261 189 890 227 9 70 chr12 34080094 34080269 -109706186 - MER58A DNA MER1_type -2205 215 56 2262 101 0 0 chr12 34080269 34080555 -109705900 + AluSc SINE Alu 2 287 -22 890 227 9 70 chr12 34080555 34080608 -109705847 - MER58A DNA MER1_type -2364 56 1 503 210 75 70 chr12 34080609 34080795 -109705660 - MIR SINE MIR -65 197 11 1353 179 8 0 chr12 34080833 34081068 -109705387 - AluJb SINE Alu -5 307 71 232 250 0 0 chr12 34081068 34081120 -109705335 + LTR30 LTR ERV1 1 52 -670 1850 89 150 231 chr12 34081124 34081750 -109704705 + LTR12 LTR ERV1 57 579 -135 456 176 0 0 chr12 34081752 34081826 -109704629 - AluS SINE Alu -239 74 1 2055 112 0 37 chr12 34081832 34082153 -109704302 - AluSg SINE Alu -1 309 1 517 240 174 15 chr12 34082178 34082374 -109704081 - L1MC4a LINE L1 -1897 5911 5685 21 0 0 0 chr12 34082417 34082438 -109704017 + AT_rich Low_complexity Low_complexity 1 21 0 1627 163 0 66 chr12 34082443 34082576 -109703879 + AluSq SINE Alu 1 141 -172 2520 62 0 13 chr12 34082576 34082884 -109703571 + AluY SINE Alu 1 304 -7 1627 163 0 66 chr12 34082884 34083070 -109703385 + AluSq SINE Alu 141 299 -14 827 207 141 75 chr12 34083073 34083421 -109703034 - LTR33A LTR ERVL -150 373 3 3112 47 8 3 chr12 34083450 34083832 -109702623 + L1PA8 LINE L1 5788 6171 -1 318 217 87 6 chr12 34083917 34084050 -109702405 - L1MC4a LINE L1 -697 5469 5335 252 304 20 39 chr12 34084876 34084978 -109701477 + L2 LINE L2 3204 3303 -10 3209 97 30 49 chr12 34085560 34086067 -109700388 + LOR1a LTR ERV1 1 497 0 475 82 14 41 chr12 34086148 34086221 -109700234 - L1M3 LINE L1 -428 5752 5682 1499 224 52 12 chr12 34086529 34086873 -109699582 - MLT1A2 LTR MaLR 0 374 17 657 285 61 123 chr12 34087198 34087654 -109698801 + ERVL LTR ERVL 1906 2333 -3431 542 150 17 83 chr12 34087655 34087726 -109698729 + L1MB4 LINE L1 6069 6130 -50 2471 60 0 10 chr12 34087726 34087860 -109698595 + AluY SINE Alu 1 135 -176 2464 50 3 14 chr12 34087860 34088157 -109698298 + AluY SINE Alu 1 294 -17 2471 60 0 10 chr12 34088157 34088323 -109698132 + AluY SINE Alu 135 298 -13 542 150 17 83 chr12 34088323 34088371 -109698084 + L1MB4 LINE L1 6130 6180 0 1984 138 0 3 chr12 34088547 34088870 -109697585 + AluSx SINE Alu 1 322 0 530 274 99 31 chr12 34089489 34089712 -109696743 + MIR SINE MIR 23 260 -2 2457 81 7 0 chr12 34090042 34090340 -109696115 + AluSq SINE Alu 1 300 -13 261 295 0 0 chr12 34090354 34090432 -109696023 + L1M4 LINE L1 2853 2930 -3216 26 0 0 0 chr12 34090454 34090480 -109695975 + AT_rich Low_complexity Low_complexity 1 26 0 2225 123 113 38 chr12 34090507 34090853 -109695602 + MSTA LTR MaLR 1 382 -46 2251 109 3 0 chr12 34090853 34091147 -109695308 + AluSp SINE Alu 10 304 -9 2225 123 113 38 chr12 34091147 34091198 -109695257 + MSTA LTR MaLR 382 428 0 1882 154 3 14 chr12 34091217 34091510 -109694945 + AluJo SINE Alu 1 290 -22 330 26 0 0 chr12 34091560 34091599 -109694856 + (CA)n Simple_repeat Simple_repeat 2 40 0 450 167 13 26 chr12 34091599 34091677 -109694778 - MER2 DNA MER2_type -2 343 267 2134 87 31 3 chr12 34092069 34092356 -109694099 + AluSg SINE Alu 1 295 -15 689 142 14 71 chr12 34092441 34092582 -109693873 - FLAM_C SINE Alu 0 133 1 2009 134 0 7 chr12 34092586 34092889 -109693566 - AluSx SINE Alu 0 301 1 2254 147 16 21 chr12 34092933 34093308 -109693147 - THE1C LTR MaLR 0 375 3 270 95 0 0 chr12 34093310 34093352 -109693103 - THE1C-int LTR MaLR 0 1580 1539 2240 109 6 6 chr12 34093356 34093668 -109692787 - AluSx SINE Alu 0 312 1 300 319 22 22 chr12 34093672 34093810 -109692645 + HAL1 LINE L1 144 281 -2226 882 284 90 35 chr12 34093870 34094324 -109692131 + HAL1 LINE L1 476 954 -1553 1992 107 42 7 chr12 34094367 34094656 -109691799 + AluSc SINE Alu 1 299 -10 926 97 0 0 chr12 34094656 34094770 -109691685 + AluSq/x SINE Alu 1 114 -199 1358 233 81 40 chr12 34095292 34095596 -109690859 + HAL1 LINE L1 986 1321 -1186 2181 116 3 3 chr12 34095596 34095899 -109690556 + AluSx SINE Alu 1 303 -9 1358 233 81 40 chr12 34095899 34096113 -109690342 + HAL1 LINE L1 1321 1525 -982 240 147 73 0 chr12 34096533 34096601 -109689854 + GA-rich Low_complexity Low_complexity 3 75 0 396 208 13 0 chr12 34096725 34096802 -109689653 - MER58 DNA MER1_type -2312 108 31 201 138 0 0 chr12 34096856 34096885 -109689570 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 583 186 23 23 chr12 34096888 34096910 -109689545 + GA-rich Low_complexity Low_complexity 1 22 -155 2191 117 7 0 chr12 34096910 34097209 -109689246 + AluSx SINE Alu 1 301 -11 583 186 23 23 chr12 34097209 34097363 -109689092 + GA-rich Low_complexity Low_complexity 21 177 0 1166 173 50 167 chr12 34098130 34098246 -109688209 - L1ME1 LINE L1 -193 5973 5845 1973 131 41 0 chr12 34098246 34098537 -109687918 - AluSq SINE Alu -10 303 1 1166 173 50 167 chr12 34098537 34098900 -109687555 - L1ME1 LINE L1 -321 5845 5550 957 245 85 60 chr12 34098903 34098971 -109687484 + MSTC LTR MaLR 16 81 -347 1825 181 0 0 chr12 34098971 34099264 -109687191 + AluJo SINE Alu 1 293 -19 957 245 85 60 chr12 34099264 34099529 -109686926 + MSTC LTR MaLR 81 338 -90 2216 102 17 0 chr12 34099529 34099822 -109686633 + AluSx SINE Alu 3 300 -12 2509 72 0 3 chr12 34099822 34100128 -109686327 + AluY SINE Alu 1 306 -5 957 245 85 60 chr12 34100128 34100192 -109686263 + MSTC LTR MaLR 337 425 -3 491 205 85 2 chr12 34100197 34100336 -109686119 - L1ME1 LINE L1 -605 5559 5411 578 211 14 16 chr12 34100365 34100512 -109685943 - L1P5 LINE L1 -698 5456 5305 341 244 106 74 chr12 34100547 34100640 -109685815 - L1ME1 LINE L1 -3023 3123 3034 2228 109 0 3 chr12 34100640 34100953 -109685502 - AluSx SINE Alu 0 312 1 341 244 106 74 chr12 34100953 34101015 -109685440 - L1ME1 LINE L1 -3112 3034 2975 2578 37 0 0 chr12 34101015 34101311 -109685144 - AluY SINE Alu -15 296 1 341 244 106 74 chr12 34101311 34101371 -109685084 - L1ME1 LINE L1 -3171 2975 2900 900 152 13 25 chr12 34101435 34101593 -109684862 + Tigger1 DNA MER2_type 2 157 -2261 * 1071 175 53 5 chr12 34101582 34101788 -109684667 + Tigger1 DNA MER2_type 2202 2417 -1 362 249 153 84 chr12 34101789 34102036 -109684419 - L1ME1 LINE L1 -3348 2798 2519 2223 116 10 0 chr12 34102036 34102338 -109684117 - AluSp SINE Alu -8 305 1 362 249 153 84 chr12 34102338 34102436 -109684019 - L1ME1 LINE L1 -3627 2519 2429 315 275 59 77 chr12 34102486 34102582 -109683873 + L1MEc LINE L1 1380 1476 -4920 381 175 0 0 chr12 34102582 34102645 -109683810 - AluSg SINE Alu 0 301 239 2241 91 0 20 chr12 34102587 34102885 -109683570 - AluSx SINE Alu -15 297 6 315 275 59 77 chr12 34102645 34103038 -109683417 + L1MEc LINE L1 1476 1627 -4769 1740 121 0 0 chr12 34103038 34103277 -109683178 - AluSg SINE Alu -71 239 1 315 275 59 77 chr12 34103277 34103425 -109683030 + L1MEc LINE L1 1627 1776 -4620 2104 142 0 0 chr12 34103745 34104040 -109682415 + AluSx SINE Alu 1 295 -17 560 143 11 11 chr12 34104127 34104218 -109682237 - MLT1A2 LTR MaLR 0 374 284 1008 183 11 6 chr12 34104228 34104403 -109682052 - FRAM SINE Alu -7 169 1 2127 102 63 0 chr12 34104409 34104694 -109681761 - AluSg SINE Alu -7 303 1 1510 94 0 0 chr12 34104694 34104896 -109681559 + HERVFH19I LTR ERV1 5492 5693 -2026 3029 100 107 61 chr12 34104902 34105444 -109681011 + LTR4 LTR ERV1 30 596 0 15559 77 7 12 chr12 34105444 34106663 -109679792 + HERVFH19I LTR ERV1 5690 6899 -820 2106 103 0 38 chr12 34106663 34106979 -109679476 - AluSc SINE Alu 0 305 1 15559 77 7 12 chr12 34106979 34107797 -109678658 + HERVFH19I LTR ERV1 6899 7719 0 1458 183 18 1 chr12 34107797 34108196 -109678259 + LTR19A LTR ERV1 1 486 0 2126 130 7 3 chr12 34108581 34108880 -109677575 - AluSp SINE Alu -13 300 1 2256 97 7 3 chr12 34109570 34109868 -109676587 - AluSq SINE Alu -14 299 1 335 87 0 0 chr12 34109869 34109915 -109676540 + MADE1 DNA Mariner 30 75 -5 258 257 54 0 chr12 34109981 34110081 -109676374 + GA-rich Low_complexity Low_complexity 1 105 0 1823 53 0 22 chr12 34110219 34110445 -109676010 + AluY SINE Alu 76 296 -15 2671 51 0 0 chr12 34110451 34110762 -109675693 + AluY SINE Alu 1 311 0 1093 142 0 38 chr12 34110773 34110956 -109675499 - AluJo SINE Alu -44 268 93 2588 161 56 99 chr12 34110958 34111425 -109675030 - MER21B LTR ERV1 -312 551 112 838 110 0 0 chr12 34111425 34111543 -109674912 + AluJ SINE Alu 1 118 -184 2588 161 56 99 chr12 34111543 34111651 -109674804 - MER21B LTR ERV1 -751 112 1 2325 93 3 7 chr12 34111796 34112087 -109674368 - AluSg SINE Alu -20 290 1 1108 159 0 32 chr12 34112239 34112254 -109674201 + AluJ SINE Alu 120 134 -178 1995 139 0 31 chr12 34112254 34112388 -109674067 + AluSx SINE Alu 3 140 -172 2261 104 14 0 chr12 34112388 34112685 -109673770 + AluSg SINE Alu 1 301 -9 1995 139 0 31 chr12 34112685 34112867 -109673588 + AluSx SINE Alu 140 309 -3 1108 159 0 32 chr12 34112867 34113040 -109673415 + AluJ SINE Alu 134 302 -10 1907 153 20 7 chr12 34113644 34113944 -109672511 - AluJb SINE Alu -8 304 1 267 289 37 37 chr12 34114010 34114145 -109672310 + LTR19A-int LTR ERV1 3 137 -7400 266 229 16 0 chr12 34114239 34114300 -109672155 + MER34B LTR ERV1 504 565 0 2329 87 0 10 chr12 34114430 34114730 -109671725 - AluSg SINE Alu -9 301 5 256 257 88 68 chr12 34115214 34115362 -109671093 + LTR49-int LTR ERV1 1372 1522 -4809 1306 193 57 30 chr12 34115365 34115661 -109670794 - AluJb SINE Alu -8 304 1 279 181 48 48 chr12 34116004 34116109 -109670346 + LTR49-int LTR ERV1 1290 1394 -4937 51 31 0 0 chr12 34116444 34116509 -109669946 + AT_rich Low_complexity Low_complexity 1 65 0 2053 137 23 0 chr12 34116628 34116927 -109669528 + AluSx SINE Alu 2 307 -5 289 245 133 0 chr12 34117029 34117127 -109669328 + LTR49-int LTR ERV1 1523 1633 -4698 704 153 0 0 chr12 34117147 34117258 -109669197 + AluSg/x SINE Alu 187 297 -15 265 159 0 63 chr12 34117322 34117385 -109669070 - LTR49-int LTR ERV1 -2377 2494 2436 732 180 57 35 chr12 34117388 34117682 -109668773 - LTR49-int LTR ERV1 -3202 3129 856 605 252 0 0 chr12 34117700 34117827 -109668628 - FLAM_A SINE Alu -3 130 4 416 274 40 74 chr12 34117847 34118022 -109668433 - LTR49-int LTR ERV1 -4231 2100 1932 933 131 0 15 chr12 34118031 34118168 -109668287 + AluJo SINE Alu 1 135 -177 566 215 93 45 chr12 34118213 34118411 -109668044 - LTR49-int LTR ERV1 -4391 545 351 1501 152 22 40 chr12 34118425 34118702 -109667753 + AluJo SINE Alu 30 301 -11 3931 158 17 54 chr12 34118777 34119029 -109667426 + MER84-int LTR ERV1 4267 4527 -1804 2346 94 0 7 chr12 34119029 34119338 -109667117 - AluY SINE Alu -4 307 1 3931 158 17 54 chr12 34119338 34119398 -109667057 + MER84-int LTR ERV1 4527 4588 -1743 1836 156 0 20 chr12 34119398 34119693 -109666762 - AluJo SINE Alu -12 300 12 3931 158 17 54 chr12 34119693 34120193 -109666262 + MER84-int LTR ERV1 4588 5050 -1281 274 220 70 20 chr12 34120199 34120299 -109666156 + MER84-int LTR ERV1 4274 4378 -576 1660 162 55 3 chr12 34120330 34120620 -109665835 + AluJb SINE Alu 1 305 -7 1357 139 14 96 chr12 34120859 34121140 -109665315 - MER61E LTR ERV1 -43 526 269 1003 174 48 48 chr12 34121214 34121421 -109665034 - LTR25 LTR ERV1 -340 454 248 804 149 6 77 chr12 34121409 34121577 -109664878 - MER61E LTR ERV1 -413 156 1 * 293 298 35 18 chr12 34122426 34122540 -109663915 + L1P LINE L1 4901 5016 -1130 207 0 0 0 chr12 34122731 34122754 -109663701 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1350 58 0 0 chr12 34122756 34122912 -109663543 - AluY SINE Alu -23 288 133 289 258 0 0 chr12 34122986 34123052 -109663403 - AluSp/q SINE Alu -20 283 218 204 149 0 0 chr12 34123084 34123131 -109663324 + (TC)n Simple_repeat Simple_repeat 1 47 0 538 72 0 0 chr12 34123158 34123227 -109663228 + AluSc SINE Alu 222 290 -19 306 0 0 0 chr12 34123227 34123261 -109663194 + (TA)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr12 34123467 34123496 -109662959 + AT_rich Low_complexity Low_complexity 1 29 0 768 181 0 0 chr12 34123599 34123732 -109662723 + FLAM_C SINE Alu 1 133 0 2571 75 0 0 chr12 34124140 34124448 -109662007 - AluY SINE Alu -3 308 1 1072 90 0 0 chr12 34124451 34124584 -109661871 - AluSp SINE Alu -180 133 1 1524 169 7 34 chr12 34124586 34124882 -109661573 - AluJb SINE Alu -16 296 9 236 250 13 26 chr12 34125074 34125150 -109661305 + LTR37B LTR ERV1 210 284 -184 245 241 31 93 chr12 34125162 34125324 -109661131 + L1ME4a LINE L1 1175 6083 -22 26 30 0 0 chr12 34125526 34125559 -109660896 + AT_rich Low_complexity Low_complexity 1 33 0 1453 71 0 112 chr12 34125898 34126143 -109660312 - AluSq SINE Alu 0 303 84 659 227 131 73 chr12 34126161 34126558 -109659897 - MER34 LTR ERV1 0 542 123 492 146 34 0 chr12 34126559 34126648 -109659807 - AluJb SINE Alu -43 269 178 279 333 17 6 chr12 34126897 34127074 -109659381 + GA-rich Low_complexity Low_complexity 1 179 0 * 392 309 6 32 chr12 34126961 34127278 -109659177 + G-rich Low_complexity Low_complexity 1 308 0 1845 159 38 19 chr12 34127338 34127703 -109658752 - THE1C LTR MaLR -1 374 3 684 191 22 51 chr12 34127704 34127804 -109658651 + Charlie4 DNA MER1_type 1789 1883 -78 1994 120 62 3 chr12 34127804 34128095 -109658360 + AluSx SINE Alu 1 308 -4 684 191 22 51 chr12 34128095 34128172 -109658283 + Charlie4 DNA MER1_type 1883 1961 0 446 191 95 137 chr12 34128288 34128456 -109657999 - MLT1J LTR MaLR -314 197 37 2058 144 0 0 chr12 34128475 34128773 -109657682 + AluSx SINE Alu 1 298 -14 2255 93 0 3 chr12 34128953 34129244 -109657211 + AluSg1 SINE Alu 1 290 -19 478 304 33 16 chr12 34129893 34130077 -109656378 - MIR SINE MIR -29 233 47 1462 194 4 4 chr12 34130536 34130784 -109655671 + AluJb SINE Alu 1 248 -64 745 165 0 0 chr12 34131011 34131126 -109655329 + FLAM_C SINE Alu 1 115 -18 32 26 0 0 chr12 34131132 34131171 -109655284 + AT_rich Low_complexity Low_complexity 1 39 0 382 292 28 0 chr12 34131592 34131736 -109654719 + G-rich Low_complexity Low_complexity 6 153 0 1905 174 74 56 chr12 34132227 34132310 -109654145 - LTR10A LTR ERV1 0 548 468 2218 57 68 0 chr12 34132310 34132590 -109653865 - AluY SINE Alu -11 300 2 1905 174 74 56 chr12 34132590 34132990 -109653465 - LTR10A LTR ERV1 -80 468 1 225 0 0 0 chr12 34133035 34133060 -109653395 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1578 136 46 50 chr12 34133064 34133344 -109653111 - AluJb SINE Alu -30 282 4 1793 141 7 4 chr12 34133354 34133624 -109652831 - AluSx SINE Alu -7 305 35 1227 152 70 152 chr12 34133624 34134112 -109652343 + LTR7 LTR ERV1 3 450 0 262 132 0 0 chr12 34134112 34134150 -109652305 - AluSx SINE Alu -259 41 4 2419 47 3 23 chr12 34134176 34134476 -109651979 + AluY SINE Alu 1 294 -17 1288 176 43 81 chr12 34134694 34135090 -109651365 - LTR24B LTR ERV1 -1 523 188 636 237 40 12 chr12 34135273 34135446 -109651009 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr12 34135766 34135787 -109650668 + GC_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chr12 34135864 34135952 -109650503 + GC_rich Low_complexity Low_complexity 1 88 0 673 254 110 13 chr12 34137541 34137777 -109648678 + MIR SINE MIR 3 261 -1 1657 148 60 54 chr12 34138170 34138468 -109647987 + AluSx SINE Alu 1 300 -12 1691 119 123 11 chr12 34139045 34139306 -109647149 + AluSg SINE Alu 1 290 -20 1966 84 80 7 chr12 34139313 34139588 -109646867 + AluSc SINE Alu 1 295 -14 3013 197 115 21 chr12 34139794 34140358 -109646097 - L1MB8 LINE L1 -18 6160 5492 2552 116 36 27 chr12 34140358 34140807 -109645648 - L1PA13 LINE L1 -1 6162 5710 3013 197 115 21 chr12 34140807 34141066 -109645389 - L1MB8 LINE L1 -686 5492 5259 433 206 29 0 chr12 34141086 34141188 -109645267 - L1MB8 LINE L1 -1297 4849 4745 1932 132 40 3 chr12 34141190 34141486 -109644969 - AluSx SINE Alu -5 307 1 1324 138 69 55 chr12 34141486 34141824 -109644631 + MER51A LTR ERV1 119 628 -6 1692 98 0 0 chr12 34141925 34142140 -109644315 + AluSc SINE Alu 86 300 -9 1521 95 40 14 chr12 34142287 34142509 -109643946 + MER30 DNA MER1_type 3 230 0 235 330 104 17 chr12 34143257 34143372 -109643083 + REP3 LTR ERV 190 314 -248 358 192 55 0 chr12 34143649 34143722 -109642733 - Tigger5 DNA MER2_type 0 2323 2247 244 213 147 13 chr12 34143728 34143803 -109642652 - Tigger5 DNA MER2_type -2031 292 208 1061 188 56 33 chr12 34143924 34144137 -109642318 - Tigger5 DNA MER2_type -2105 218 1 242 220 55 64 chr12 34144503 34144612 -109641843 + L1MC5 LINE L1 7661 7768 -193 2601 50 0 0 chr12 34144675 34144977 -109641478 - AluY SINE Alu -9 302 1 1422 191 47 47 chr12 34145172 34145471 -109640984 - AluJo SINE Alu -13 299 1 1385 169 8 8 chr12 34145508 34145745 -109640710 + AluJb SINE Alu 58 294 -18 1244 169 201 8 chr12 34145871 34146120 -109640335 - AluJb SINE Alu -15 297 1 1118 194 122 45 chr12 34146646 34146772 -109639683 - L1M4 LINE L1 -3540 2606 2491 2221 178 110 35 chr12 34146772 34147255 -109639200 + LTR44 LTR ERV1 1 519 0 1118 194 122 45 chr12 34147255 34147378 -109639077 - L1M4 LINE L1 -3655 2491 2379 2082 130 7 3 chr12 34147378 34147671 -109638784 - AluSq SINE Alu -19 294 1 1118 194 122 45 chr12 34147671 34147821 -109638634 - L1M4 LINE L1 -3767 2379 2175 1146 184 24 14 chr12 34147824 34148031 -109638424 + MER21B LTR ERV1 1 209 -654 533 176 0 0 chr12 34148052 34148143 -109638312 - MSTC LTR MaLR 0 428 338 2724 190 56 37 chr12 34148154 34148554 -109637901 + MER21B LTR ERV1 222 638 -225 2509 70 0 3 chr12 34148554 34148856 -109637599 + AluY SINE Alu 1 301 -10 2724 190 56 37 chr12 34148856 34149028 -109637427 + MER21B LTR ERV1 638 805 -58 25 31 0 0 chr12 34149059 34149091 -109637364 + AT_rich Low_complexity Low_complexity 1 32 0 340 207 0 0 chr12 34149482 34149540 -109636915 + Tigger2a DNA MER2_type 1 58 -376 849 182 75 0 chr12 34149543 34149702 -109636753 - FAM SINE Alu -4 171 1 1553 195 155 20 chr12 34150037 34150504 -109635951 - MER21B LTR ERV1 -66 797 19 1292 186 128 37 chr12 34150582 34150939 -109635516 - MLT1B LTR MaLR 0 467 3 299 200 97 74 chr12 34151167 34151223 -109635232 - L1MC3 LINE L1 0 7785 7732 2208 96 31 3 chr12 34151223 34151515 -109634940 + AluSg SINE Alu 1 300 -10 299 200 97 74 chr12 34151515 34151721 -109634734 - L1MC3 LINE L1 -53 7732 6062 977 274 150 35 chr12 34151737 34152442 -109634013 - L1ME3A LINE L1 -4 6166 5543 2204 149 20 68 chr12 34152442 34152689 -109633766 - Tigger2a DNA MER2_type -2275 433 216 1896 77 4 0 chr12 34152689 34152923 -109633532 + AluSg SINE Alu 55 289 -21 2204 149 20 68 chr12 34152923 34153130 -109633325 - Tigger2a DNA MER2_type -2492 216 1 977 274 150 35 chr12 34153130 34153422 -109633033 - L1ME3A LINE L1 -627 5543 5286 2125 95 0 20 chr12 34153422 34153718 -109632737 - AluSq SINE Alu -23 290 1 977 274 150 35 chr12 34153718 34154025 -109632430 - L1ME3A LINE L1 -884 5286 5015 1835 152 26 23 chr12 34154025 34154335 -109632120 - AluSx SINE Alu -1 311 1 977 274 150 35 chr12 34154335 34154405 -109632050 - L1ME3A LINE L1 -1155 5015 4500 2077 91 0 75 chr12 34154768 34155099 -109631356 - AluSc SINE Alu -2 307 2 2472 74 0 0 chr12 34155153 34155451 -109631004 - AluY SINE Alu -13 298 1 1000 184 110 9 chr12 34155452 34155670 -109630785 - MER21B LTR ERV1 -52 811 572 1547 159 3 70 chr12 34155774 34156088 -109630367 - AluJb SINE Alu -19 293 1 506 253 34 27 chr12 34156106 34156252 -109630203 - MER21B LTR ERV1 -619 244 98 2192 131 3 3 chr12 34156330 34156642 -109629813 - AluSx SINE Alu 0 312 1 688 268 19 62 chr12 34163795 34163951 -109622504 - MER58A DNA MER1_type -2197 223 76 2054 124 3 0 chr12 34163951 34164266 -109622189 - AluSx SINE Alu 0 316 1 688 268 19 62 chr12 34164266 34164317 -109622138 - MER58A DNA MER1_type -2344 76 24 233 322 240 0 chr12 34164336 34164482 -109621973 - MIR SINE MIR -56 206 26 1452 170 90 66 chr12 34164500 34164835 -109621620 - MER2 DNA MER2_type -1 343 1 921 273 84 51 chr12 34164996 34165606 -109620849 + L2 LINE L2 2671 3307 -6 2229 104 7 0 chr12 34165805 34166102 -109620353 + AluSp SINE Alu 1 299 -14 243 0 0 0 chr12 34166204 34166231 -109620224 + (CA)n Simple_repeat Simple_repeat 1 27 0 1119 200 49 4 chr12 34166668 34166699 -109619756 + MER46A DNA MER2_type 1 29 -2702 1966 137 3 7 chr12 34166699 34166998 -109619457 + AluSq SINE Alu 1 298 -15 1119 200 49 4 chr12 34166998 34167191 -109619264 + MER46A DNA MER2_type 29 235 -1 * 1663 144 57 57 chr12 34167191 34167363 -109619092 - Tigger3(Golem) DNA MER2_type -100 2928 2757 2000 134 0 0 chr12 34167363 34167647 -109618808 + AluSq SINE Alu 2 285 -28 1663 144 57 57 chr12 34167647 34167822 -109618633 - Tigger3(Golem) DNA MER2_type -270 2758 2581 824 228 23 12 chr12 34167822 34167993 -109618462 - AluSg/x SINE Alu -11 299 127 1615 133 32 18 chr12 34168094 34168379 -109618076 - AluSx SINE Alu -15 297 9 329 330 51 19 chr12 34168626 34168841 -109617614 + L1MEc LINE L1 1252 1473 -4923 21 0 0 0 chr12 34168974 34168995 -109617460 + AT_rich Low_complexity Low_complexity 1 21 0 1449 195 91 75 chr12 34169018 34169402 -109617053 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 34169476 34169516 -109616939 + AT_rich Low_complexity Low_complexity 1 40 0 400 292 70 55 chr12 34169646 34170246 -109616209 + L1M4 LINE L1 3667 4275 -1871 901 172 21 0 chr12 34170432 34170577 -109615878 - AluJo SINE Alu -164 148 1 1249 192 98 15 chr12 34170577 34170915 -109615540 - L1ME1 LINE L1 -227 5939 5574 2377 73 0 29 chr12 34170915 34171230 -109615225 + AluY SINE Alu 1 306 -5 312 236 17 90 chr12 34171556 34171734 -109614721 + AluSp SINE Alu 3 167 -136 260 183 66 22 chr12 34172133 34172270 -109614185 + (TA)n Simple_repeat Simple_repeat 1 143 0 2282 102 42 23 chr12 34173362 34173746 -109612709 - MER61-int LTR ERV1 -3024 2193 1803 2098 141 3 0 chr12 34173749 34174048 -109612407 - AluSx SINE Alu -12 300 1 377 143 0 0 chr12 34174088 34174151 -109612304 + LTR30 LTR ERV1 552 614 -108 1278 213 44 39 chr12 34174177 34174681 -109611774 - LTR10B LTR ERV1 -5 542 1 529 228 66 42 chr12 34174681 34174848 -109611607 - LTR10B-int LTR ERV1 0 6649 6479 2591 166 11 42 chr12 34175894 34176369 -109610086 - L1PB4 LINE L1 -10 6146 5687 1046 139 36 18 chr12 34176500 34176522 -109609933 + AluJo SINE Alu 114 134 -178 2312 92 13 0 chr12 34176522 34176828 -109609627 + AluSq SINE Alu 1 310 -3 1046 139 36 18 chr12 34176828 34176971 -109609484 + AluJo SINE Alu 134 282 -30 247 295 0 0 chr12 34177635 34177696 -109608759 + MIR SINE MIR 45 105 -157 1903 130 3 25 chr12 34177762 34178046 -109608409 - AluSx SINE Alu -34 278 1 296 224 153 10 chr12 34178046 34178144 -109608311 + MIR SINE MIR 92 203 -59 273 135 126 72 chr12 34178166 34178277 -109608178 - MER113 DNA MER1_type? -83 438 322 2251 77 20 3 chr12 34178956 34179255 -109607200 - AluSc SINE Alu -5 304 1 22 0 0 0 chr12 34179255 34179277 -109607178 + AT_rich Low_complexity Low_complexity 1 22 0 675 162 8 17 chr12 34179287 34179404 -109607051 - FLAM_C SINE Alu -27 116 1 27 0 0 0 chr12 34179490 34179517 -109606938 + AT_rich Low_complexity Low_complexity 1 27 0 2082 114 7 3 chr12 34179520 34179817 -109606638 + AluSq SINE Alu 1 298 -15 1854 106 4 4 chr12 34179820 34180094 -109606361 + AluY SINE Alu 2 275 -36 701 179 26 8 chr12 34180148 34180265 -109606190 - FLAM_C SINE Alu -23 120 2 647 185 74 0 chr12 34180311 34180446 -109606009 - L1MA9 LINE L1 0 6312 6168 2446 88 0 0 chr12 34180446 34180752 -109605703 - AluSp SINE Alu -7 306 1 788 134 8 8 chr12 34180892 34181019 -109605436 + L1M2 LINE L1 5141 5267 -879 1361 138 9 13 chr12 34181067 34181298 -109605157 + L1M2 LINE L1 5256 5485 -827 996 168 53 40 chr12 34181299 34181525 -109604930 + AluSx SINE Alu 1 229 -83 283 221 15 25 chr12 34181567 34181647 -109604808 + AluJ/FLAM SINE Alu 1 64 -238 609 284 87 73 chr12 34181780 34181924 -109604531 + ERVL LTR ERVL 3410 3551 -2213 2440 63 0 3 chr12 34181924 34182226 -109604229 + AluY SINE Alu 1 301 -10 609 284 87 73 chr12 34182226 34182451 -109604004 + ERVL LTR ERVL 3551 3784 -1980 512 194 10 20 chr12 34182509 34182607 -109603848 + FLAM_A SINE Alu 26 122 -20 833 312 110 15 chr12 34182817 34183505 -109602950 + ERVL LTR ERVL 4054 4822 -942 1793 166 16 7 chr12 34183505 34183813 -109602642 - AluJb SINE Alu -1 311 1 1859 148 41 29 chr12 34183837 34184181 -109602274 - L1MB7 LINE L1 -22 6162 5815 2284 104 7 0 chr12 34184181 34184489 -109601966 + AluSx SINE Alu 1 310 -2 2601 62 0 3 chr12 34184648 34184954 -109601501 + AluSq SINE Alu 1 305 -8 327 49 0 0 chr12 34184954 34184995 -109601460 + (TA)n Simple_repeat Simple_repeat 2 42 0 227 226 0 43 chr12 34184998 34185091 -109601364 + L1MC4 LINE L1 6615 6703 -1339 1044 151 0 0 chr12 34185100 34185279 -109601176 + (TA)n Simple_repeat Simple_repeat 1 179 0 1186 87 12 0 chr12 34185279 34185440 -109601015 + AluSq SINE Alu 135 297 -16 187 315 0 0 chr12 34185708 34185762 -109600693 + MIR3 SINE MIR 119 172 -36 737 282 105 61 chr12 34185962 34186015 -109600440 + L2 LINE L2 2862 2911 -402 2137 110 10 3 chr12 34186015 34186314 -109600141 - AluSx SINE Alu -11 301 1 737 282 105 61 chr12 34186314 34186604 -109599851 + L2 LINE L2 2911 3220 -93 2264 54 4 4 chr12 34186604 34186912 -109599543 - AluY SINE Alu 0 308 1 2766 154 13 48 chr12 34186915 34186972 -109599483 + MER84-int LTR ERV1 4381 4438 -1893 1935 150 0 10 chr12 34186972 34187266 -109599189 - AluJo SINE Alu -10 302 12 2766 154 13 48 chr12 34187266 34187766 -109598689 + MER84-int LTR ERV1 4438 5050 -1281 279 220 70 20 chr12 34187772 34187872 -109598583 + MER84-int LTR ERV1 4274 4378 -576 1673 159 55 3 chr12 34187903 34188193 -109598262 + AluJb SINE Alu 1 305 -7 1351 139 14 96 chr12 34188432 34188713 -109597742 - MER61E LTR ERV1 -43 526 269 1002 174 48 48 chr12 34188787 34188994 -109597461 - LTR25 LTR ERV1 -340 454 248 799 149 6 77 chr12 34188982 34189150 -109597305 - MER61E LTR ERV1 -413 156 1 * 291 258 53 73 chr12 34189999 34190150 -109596305 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 34190304 34190327 -109596128 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2471 59 0 0 chr12 34190329 34190617 -109595838 - AluY SINE Alu -23 288 1 704 72 0 0 chr12 34190830 34190913 -109595542 + FRAM SINE Alu 62 144 -32 2483 66 3 0 chr12 34190913 34191214 -109595241 - AluY SINE Alu -9 302 1 1753 122 0 8 chr12 34191268 34191531 -109594924 - MER2 DNA MER2_type -71 274 14 2571 77 0 0 chr12 34191610 34191921 -109594534 + AluY SINE Alu 1 311 0 313 271 141 56 chr12 34192144 34192338 -109594117 - L1M4 LINE L1 -1168 4978 4753 816 181 0 0 chr12 34192338 34192471 -109593984 - FLAM_C SINE Alu 0 133 1 313 271 141 56 chr12 34192471 34192545 -109593910 - L1M4 LINE L1 -1393 4753 4687 29 0 0 0 chr12 34192574 34192603 -109593852 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 34192805 34192827 -109593628 + (TA)n Simple_repeat Simple_repeat 2 23 0 1262 97 0 0 chr12 34192827 34192982 -109593473 - AluSc SINE Alu -22 287 133 2054 106 4 0 chr12 34193023 34193297 -109593158 + AluSx SINE Alu 29 303 -9 245 259 68 34 chr12 34193570 34193717 -109592738 - L1ME4a LINE L1 -1 6120 5969 2472 82 0 0 chr12 34193785 34194090 -109592365 - AluY SINE Alu -5 306 2 2046 105 49 0 chr12 34194092 34194377 -109592078 - AluSq SINE Alu -14 299 1 2379 95 0 0 chr12 34194427 34194731 -109591724 - AluY SINE Alu -7 304 1 279 252 122 84 chr12 34195271 34195301 -109591154 - MER91C DNA MER1_type -3 137 110 2460 76 3 0 chr12 34195301 34195602 -109590853 - AluSg SINE Alu -8 302 1 279 252 122 84 chr12 34195602 34195702 -109590753 - MER91C DNA MER1_type -30 110 2 1419 126 10 0 chr12 34196017 34196216 -109590239 - AluSq SINE Alu -17 296 96 2415 85 3 0 chr12 34198262 34198568 -109587887 - AluSq SINE Alu -6 307 1 251 125 172 0 chr12 34198726 34198790 -109587665 - L1ME4a LINE L1 0 6121 6047 2248 119 0 3 chr12 34198993 34199305 -109587150 - AluSq SINE Alu -2 311 1 1904 151 13 0 chr12 34199363 34199667 -109586788 + AluSg SINE Alu 1 308 -2 2374 52 13 7 chr12 34200005 34200314 -109586141 + AluY SINE Alu 1 311 0 410 181 103 35 chr12 34200384 34200500 -109585955 - MIR SINE MIR -42 220 97 726 193 22 30 chr12 34201097 34201232 -109585223 + MER94 DNA DNA 1 134 0 201 239 0 22 chr12 34201251 34201297 -109585158 + MIR SINE MIR 87 131 -77 1561 180 6 52 chr12 34201297 34201487 -109584968 - AluJb SINE Alu 0 312 142 2446 62 0 0 chr12 34201487 34201779 -109584676 - AluY SINE Alu -19 292 1 1561 180 6 52 chr12 34201779 34201915 -109584540 - AluJb SINE Alu -170 142 1 1641 156 3 36 chr12 34201917 34202219 -109584236 - AluJb SINE Alu -16 296 5 372 206 16 0 chr12 34202234 34202297 -109584158 + MER2 DNA MER2_type 280 343 -2 242 250 13 26 chr12 34202407 34202483 -109583972 + LTR37B LTR ERV1 210 284 -184 255 241 31 93 chr12 34202495 34202657 -109583798 + L1ME4a LINE L1 1175 6083 -22 26 30 0 0 chr12 34202859 34202892 -109583563 + AT_rich Low_complexity Low_complexity 1 33 0 1436 71 0 112 chr12 34203231 34203476 -109582979 - AluSq SINE Alu 0 303 84 722 235 126 66 chr12 34203494 34203890 -109582565 - MER34 LTR ERV1 0 542 123 912 159 0 0 chr12 34203891 34204029 -109582426 - AluJb SINE Alu -43 269 132 1082 233 74 19 chr12 34204052 34204361 -109582094 - PABL_B LTR ERV1 0 667 342 329 272 72 126 chr12 34204373 34204778 -109581677 - PABL_B LTR ERV1 -283 384 2 808 145 0 0 chr12 34204778 34204895 -109581560 - FLAM_C SINE Alu -16 117 1 340 242 11 0 chr12 34204896 34204987 -109581468 - MER34 LTR ERV1 -450 92 1 3134 136 101 92 chr12 34205081 34205622 -109580833 + LTR8 LTR ERV1 2 537 -154 1824 121 0 0 chr12 34205622 34205870 -109580585 + AluSg SINE Alu 62 309 -1 3134 136 101 92 chr12 34205870 34205971 -109580484 + LTR8 LTR ERV1 537 653 -38 1654 171 42 0 chr12 34205971 34206235 -109580220 + AluSx SINE Alu 1 275 -37 3134 136 101 92 chr12 34206235 34206275 -109580180 + LTR8 LTR ERV1 653 691 0 254 245 254 7 chr12 34206316 34206455 -109580000 + MIR SINE MIR 63 235 -27 791 237 131 64 chr12 34206509 34206867 -109579588 - MLT2F LTR ERVL -2 661 280 2968 144 59 42 chr12 34206908 34207419 -109579036 - MER21A LTR ERV1 -6 925 403 2245 99 0 10 chr12 34207419 34207731 -109578724 - AluSx SINE Alu 0 312 3 2968 144 59 42 chr12 34207731 34207760 -109578695 - MER21A LTR ERV1 -528 403 376 910 146 277 0 chr12 34207765 34207971 -109578484 - MER21A LTR ERV1 -667 264 2 684 266 51 21 chr12 34207972 34208209 -109578246 - MLT2F LTR ERVL -419 244 1 2136 65 79 7 chr12 34208330 34208609 -109577846 - AluY SINE Alu -12 299 1 382 266 11 0 chr12 34208674 34208768 -109577687 + MER34 LTR ERV1 1 95 -447 955 172 18 0 chr12 34208775 34208938 -109577517 + FRAM SINE Alu 1 164 -12 1905 136 3 46 chr12 34208939 34209263 -109577192 + AluJb SINE Alu 1 310 -2 869 252 38 106 chr12 34209294 34209767 -109576688 + MER34 LTR ERV1 102 542 0 862 123 19 45 chr12 34209789 34209943 -109576512 + FRAM SINE Alu 9 158 -18 1658 87 5 0 chr12 34210183 34210389 -109576066 - AluSq SINE Alu -100 213 7 1167 86 0 0 chr12 34210392 34210531 -109575924 - AluSc SINE Alu -168 141 3 1038 138 12 6 chr12 34210535 34210702 -109575753 - MER21A-int LTR ERV1 -150 7666 7499 2077 89 44 0 chr12 34210728 34211022 -109575433 + AluY SINE Alu 1 306 0 2271 90 7 0 chr12 34211037 34211326 -109575129 + AluSc SINE Alu 1 291 -18 911 295 50 45 chr12 34211472 34212090 -109574365 - HERV3 LTR ERV1 -1684 6072 5459 3550 76 13 2 chr12 34212090 34212538 -109573917 + MLT2A2 LTR ERVL 1 453 0 911 295 50 45 chr12 34212538 34212650 -109573805 - HERV3 LTR ERV1 -2297 5459 4624 970 91 8 8 chr12 34212658 34212790 -109573665 + AluSp SINE Alu 1 132 -181 2015 139 3 7 chr12 34212792 34213087 -109573368 + AluSx SINE Alu 1 294 -18 321 253 96 31 chr12 34213088 34213334 -109573121 - HERV3 LTR ERV1 -1728 5432 4733 916 259 44 45 chr12 34213503 34213939 -109572516 - HERV3 LTR ERV1 -2804 4952 4560 2070 105 10 7 chr12 34213941 34214235 -109572220 - AluSx SINE Alu -17 295 1 1337 288 55 74 chr12 34214235 34214412 -109572043 - HERV3 LTR ERV1 -1146 3908 3729 2173 131 0 6 chr12 34214412 34214724 -109571731 + AluSg SINE Alu 1 310 0 1337 288 55 74 chr12 34214724 34215726 -109570729 - HERV3 LTR ERV1 -1325 3729 2709 2264 128 0 0 chr12 34215726 34216032 -109570423 - AluSx SINE Alu -6 306 1 2178 128 0 0 chr12 34216037 34216343 -109570112 - AluSc SINE Alu -3 306 1 1337 288 55 74 chr12 34216343 34216406 -109570049 - HERV3 LTR ERV1 -2094 2960 2897 269 321 24 24 chr12 34216537 34216806 -109569649 - HERV3 LTR ERV1 -4901 3725 2640 2343 112 3 0 chr12 34217097 34217409 -109569046 - AluSp SINE Alu 0 313 1 607 298 25 47 chr12 34217418 34217737 -109568718 - HERV3 LTR ERV1 -4023 2653 2342 252 393 0 0 chr12 34217946 34218091 -109568364 - HERV3 LTR ERV1 -6487 1912 1768 517 328 30 26 chr12 34218327 34218629 -109567826 - HERV3 LTR ERV1 -4006 948 646 2450 182 83 122 chr12 34218714 34219556 -109566899 - HERV3 LTR ERV1 -7007 809 1 1441 143 67 53 chr12 34219556 34219842 -109566613 - MER51A LTR ERV1 0 634 353 2397 92 3 0 chr12 34219842 34220147 -109566308 - AluSp SINE Alu -7 306 1 1441 143 67 53 chr12 34220147 34220267 -109566188 - MER51A LTR ERV1 -281 353 1 780 182 8 0 chr12 34220314 34220446 -109566009 + FLAM_A SINE Alu 1 133 0 2132 114 0 0 chr12 34220947 34221248 -109565207 + AluSg SINE Alu 1 301 0 761 128 30 30 chr12 34221294 34221427 -109565028 + AluJb SINE Alu 2 134 -178 2392 98 0 0 chr12 34221557 34221854 -109564601 - AluSg SINE Alu -13 297 1 3820 77 18 18 chr12 34222132 34222801 -109563654 + MER11A LTR ERVK 1 737 -499 2306 69 5 161 chr12 34223441 34223876 -109562579 + MER11A LTR ERVK 900 1266 0 2043 118 31 0 chr12 34224402 34224690 -109561765 + AluSx SINE Alu 1 297 -15 1793 175 3 3 chr12 34224700 34224997 -109561458 + AluJb SINE Alu 6 302 -10 2170 136 57 119 chr12 34225069 34225665 -109560790 + LTR34 LTR ERV1 1 559 -140 1779 151 44 12 chr12 34225665 34225984 -109560471 - THE1C LTR MaLR 0 375 47 2079 134 0 0 chr12 34226202 34226485 -109559970 - AluSx SINE Alu -29 283 1 1368 132 7 162 chr12 34226625 34227033 -109559422 + L1M2 LINE L1 5141 5610 -633 1651 151 74 7 chr12 34227033 34227317 -109559138 + AluSx SINE Alu 1 303 -9 960 253 34 3 chr12 34227317 34227610 -109558845 + AluSx SINE Alu 1 302 0 1368 132 7 162 chr12 34227610 34227625 -109558830 + L1M2 LINE L1 5484 5500 -743 335 213 40 0 chr12 34228107 34228182 -109558273 + MSTD-int LTR MaLR 1658 1735 0 1123 192 113 73 chr12 34228182 34228563 -109557892 + MSTD LTR MaLR 1 396 0 556 305 0 38 chr12 34228674 34228887 -109557568 + MIR SINE MIR 45 249 -13 26 0 0 0 chr12 34228897 34228923 -109557532 + AT_rich Low_complexity Low_complexity 1 26 0 612 202 0 0 chr12 34229161 34229285 -109557170 + AluSg/x SINE Alu 168 291 -19 510 274 26 63 chr12 34229388 34229578 -109556877 + MER34 LTR ERV1 359 541 -1 498 241 0 0 chr12 34229882 34229990 -109556465 + FLAM_A SINE Alu 15 122 -20 843 246 12 12 chr12 34230146 34230398 -109556057 - AluY SINE Alu -11 300 49 676 200 0 0 chr12 34230532 34230657 -109555798 + AluSp/q SINE Alu 164 288 -25 1730 171 0 17 chr12 34230663 34230962 -109555493 + AluSx SINE Alu 1 294 -18 504 174 0 54 chr12 34230962 34231129 -109555326 + GA-rich Low_complexity Low_complexity 2 159 0 347 243 18 29 chr12 34231145 34231418 -109555037 + GA-rich Low_complexity Low_complexity 1 270 0 823 273 0 38 chr12 34231442 34231731 -109554724 + AluSx SINE Alu 14 291 -21 977 168 119 10 chr12 34231840 34232042 -109554413 + Tigger3(Golem) DNA MER2_type 2803 3026 -3 292 181 12 60 chr12 34232065 34232148 -109554307 - LTR37B LTR ERV1 -246 222 144 389 272 56 16 chr12 34232167 34232292 -109554163 + MER58A DNA MER1_type 14 143 0 2529 164 2 2 chr12 34232455 34232876 -109553579 + LTR3 LTR ERVK 12 432 0 1505 166 11 7 chr12 34232978 34233261 -109553194 + MER41A LTR ERV1 1 284 -270 1175 214 25 4 chr12 34233364 34233602 -109552853 + AluJb SINE Alu 50 292 -20 2354 101 67 20 chr12 34233848 34234206 -109552249 - THE1C LTR MaLR 0 375 1 1070 98 0 0 chr12 34234655 34234798 -109551657 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34235036 34235062 -109551393 + AT_rich Low_complexity Low_complexity 1 26 0 584 295 0 31 chr12 34235072 34235295 -109551160 - MIR SINE MIR -13 249 35 1020 215 105 68 chr12 34235394 34235776 -109550679 - MSTD LTR MaLR 0 396 1 1270 243 71 6 chr12 34235782 34236148 -109550307 - MSTD-int LTR MaLR -5 1730 1341 1941 126 4 0 chr12 34236248 34236519 -109549936 - AluSx SINE Alu -40 272 1 1528 213 3 7 chr12 34236519 34236818 -109549637 - AluJb SINE Alu 0 312 14 828 120 0 8 chr12 34237432 34237549 -109548906 - AluSq/x SINE Alu -195 118 3 280 192 14 82 chr12 34237553 34237626 -109548829 + AluJb SINE Alu 68 135 -167 231 323 65 57 chr12 34237912 34238036 -109548419 + L2 LINE L2 3145 3269 -3 1862 143 3 7 chr12 34238085 34238378 -109548077 - AluSx SINE Alu -20 292 1 29 28 0 0 chr12 34239678 34239714 -109546741 + AT_rich Low_complexity Low_complexity 1 36 0 1673 136 11 11 chr12 34240523 34240803 -109545652 - AluSc SINE Alu -29 280 1 423 60 0 45 chr12 34241552 34241619 -109544836 - AluJ/FLAM SINE Alu -238 74 11 733 144 0 53 chr12 34241819 34241951 -109544504 - FLAM_C SINE Alu -6 127 3 195 268 0 36 chr12 34242760 34242816 -109543639 - L3 LINE CR1 -12 1565 1512 228 67 0 0 chr12 34243450 34243480 -109542975 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34244198 34244269 -109542186 - AluY SINE Alu -22 289 214 1222 241 24 21 chr12 34245109 34245313 -109541142 - MLT1A1 LTR MaLR -73 292 85 2293 146 37 0 chr12 34245313 34245663 -109540792 - THE1B LTR MaLR -1 363 1 1222 241 24 21 chr12 34245663 34245749 -109540706 - MLT1A1 LTR MaLR -280 85 1 260 143 63 32 chr12 34246099 34246162 -109540293 - MER91B DNA MER1_type -125 65 1 299 293 76 58 chr12 34247280 34247505 -109538950 - MIR SINE MIR -2 260 32 34 0 0 0 chr12 34248839 34248873 -109537582 + AT_rich Low_complexity Low_complexity 1 34 0 446 224 93 25 chr12 34250331 34250492 -109535963 - L2 LINE L2 -423 2891 2720 1980 110 3 10 chr12 34250713 34251012 -109535443 + AluSx SINE Alu 1 297 -15 1052 244 7 7 chr12 34251807 34252086 -109534369 - AluSx SINE Alu -14 298 20 1054 236 98 11 chr12 34252096 34252372 -109534083 - AluJo SINE Alu 0 302 3 694 268 37 30 chr12 34252763 34253032 -109533423 - L1PA16 LINE L1 -2 6164 5894 198 0 0 0 chr12 34253542 34253564 -109532891 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 1429 123 0 0 chr12 34253564 34253767 -109532688 - AluY SINE Alu -30 281 79 21 89 0 0 chr12 34253771 34253827 -109532628 + AT_rich Low_complexity Low_complexity 1 56 0 2051 133 3 0 chr12 34253940 34254242 -109532213 - AluSp SINE Alu -8 305 3 1612 188 3 0 chr12 34254637 34254930 -109531525 - AluSx SINE Alu -12 300 7 1370 226 3 10 chr12 34254935 34255236 -109531219 - AluJb SINE Alu 0 312 14 374 278 136 0 chr12 34256327 34256489 -109529966 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34256905 34256931 -109529524 + (A)n Simple_repeat Simple_repeat 1 26 0 1894 149 45 0 chr12 34256941 34257229 -109529226 + AluSx SINE Alu 1 301 -11 1948 91 24 7 chr12 34257691 34257978 -109528477 - AluSq SINE Alu -19 294 3 2525 66 0 7 chr12 34257991 34258295 -109528160 - AluY SINE Alu -9 302 1 977 186 0 0 chr12 34258443 34258615 -109527840 - AluJ SINE Alu -9 303 132 2234 109 0 3 chr12 34258628 34258921 -109527534 + AluSg SINE Alu 1 292 -18 932 194 0 22 chr12 34258934 34259114 -109527341 + AluSg/x SINE Alu 119 294 -18 489 193 8 59 chr12 34259114 34259233 -109527222 - AluJ SINE Alu -190 122 10 1368 200 0 0 chr12 34259246 34259486 -109526969 + AluJo SINE Alu 52 291 -21 643 223 30 82 chr12 34259849 34259968 -109526487 + AluJb SINE Alu 11 135 -177 1510 177 14 0 chr12 34259968 34260245 -109526210 + AluY SINE Alu 1 281 -30 293 0 0 26 chr12 34260250 34260288 -109526167 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 643 223 30 82 chr12 34260288 34260395 -109526060 + AluJb SINE Alu 139 231 -81 189 0 0 0 chr12 34260478 34260499 -109525956 + (CA)n Simple_repeat Simple_repeat 2 22 0 1680 171 0 0 chr12 34260531 34260811 -109525644 + AluSq SINE Alu 7 286 -27 314 23 23 0 chr12 34260811 34260854 -109525601 + (TA)n Simple_repeat Simple_repeat 2 45 0 1061 230 3 25 chr12 34260857 34261140 -109525315 + AluJb SINE Alu 5 281 -31 505 0 31 0 chr12 34261142 34261207 -109525248 + (TA)n Simple_repeat Simple_repeat 1 67 0 771 228 29 58 chr12 34261249 34261525 -109524930 + LTR29 LTR ERV1 137 404 -218 519 188 55 31 chr12 34261576 34261704 -109524751 + AluSq SINE Alu 23 153 -160 386 323 71 34 chr12 34261815 34262137 -109524318 - L2 LINE L2 -1145 2169 1836 1892 160 0 0 chr12 34262165 34262452 -109524003 + AluSx SINE Alu 2 288 -24 8380 54 1 0 chr12 34262747 34263712 -109522743 - LTR5 LTR ERVK -3 966 1 318 258 0 52 chr12 34263723 34263742 -109522713 - L1MC2 LINE L1 -320 6024 6006 821 203 6 28 chr12 34263742 34263924 -109522531 - L1MB8 LINE L1 -170 6008 5831 1265 109 0 22 chr12 34263935 34264118 -109522337 - AluSp SINE Alu -8 305 127 530 204 28 42 chr12 34264315 34264457 -109521998 - L1MB8 LINE L1 -687 5475 5336 400 204 11 0 chr12 34264461 34264549 -109521906 + AluSg/x SINE Alu 208 296 -14 198 136 0 0 chr12 34264656 34264700 -109521755 + (TA)n Simple_repeat Simple_repeat 1 44 0 2489 80 0 0 chr12 34265318 34265619 -109520836 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34265843 34265865 -109520590 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34265922 34266187 -109520268 - MLT1B LTR MaLR -77 313 24 937 171 77 6 chr12 34266527 34266697 -109519758 + THE1B LTR MaLR 182 363 -1 909 224 6 6 chr12 34266721 34266900 -109519555 + MLT1A1 LTR MaLR 115 293 -72 2019 150 0 0 chr12 34267556 34267850 -109518605 - AluSx SINE Alu -17 295 2 1707 194 0 10 chr12 34268433 34268732 -109517723 - AluJb SINE Alu -16 296 1 597 314 36 4 chr12 34269373 34269621 -109516834 + AluJo SINE Alu 14 269 -43 226 294 92 37 chr12 34269817 34269980 -109516475 + MIR SINE MIR 86 257 -5 314 247 14 0 chr12 34269980 34270053 -109516402 + L1ME4a LINE L1 5954 6027 -94 2283 109 0 7 chr12 34270484 34270786 -109515669 - AluSx SINE Alu -12 300 1 617 271 45 29 chr12 34270864 34271038 -109515417 + MIR SINE MIR 14 195 -67 270 0 0 0 chr12 34271038 34271068 -109515387 + (TG)n Simple_repeat Simple_repeat 2 31 0 617 271 45 29 chr12 34271068 34271137 -109515318 + MIR SINE MIR 195 261 -1 2135 97 31 3 chr12 34271718 34272008 -109514447 + AluSq SINE Alu 1 298 -15 974 90 0 8 chr12 34272471 34272605 -109513850 - FLAM_C SINE Alu 0 133 1 883 105 0 45 chr12 34272789 34272922 -109513533 - FLAM_C SINE Alu -6 127 1 581 184 159 12 chr12 34273782 34273945 -109512510 + MER20 DNA MER1_type 33 219 0 217 283 17 0 chr12 34274840 34274900 -109511555 - MIR SINE MIR -157 105 45 2351 97 0 0 chr12 34274982 34275281 -109511174 - AluY SINE Alu -12 299 1 652 105 0 67 chr12 34275353 34275458 -109510997 + MER4A LTR ERV1 1 98 -566 1419 135 200 108 chr12 34275458 34275748 -109510707 + MER4A LTR ERV1 261 594 -70 1854 132 4 21 chr12 34275748 34276029 -109510426 + AluSx SINE Alu 20 295 -17 1419 135 200 108 chr12 34276029 34276108 -109510347 + MER4A LTR ERV1 594 664 0 2088 101 42 0 chr12 34276240 34276526 -109509929 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 34276617 34276858 -109509597 - MER34B LTR ERV1 -122 443 178 742 124 34 22 chr12 34276927 34277105 -109509350 + CT-rich Low_complexity Low_complexity 1 180 0 386 158 37 37 chr12 34277108 34277190 -109509265 - MER34B LTR ERV1 -483 82 1 745 182 0 30 chr12 34277441 34277573 -109508882 + FLAM_C SINE Alu 2 129 -14 2263 119 0 0 chr12 34277580 34277883 -109508572 + AluSx SINE Alu 1 303 -9 336 24 0 0 chr12 34277883 34277924 -109508531 + (CA)n Simple_repeat Simple_repeat 2 42 0 2179 163 22 38 chr12 34278014 34278467 -109507988 + L1MB8 LINE L1 5733 6178 0 2482 77 0 0 chr12 34278478 34278776 -109507679 + AluY SINE Alu 1 298 -13 1273 188 96 15 chr12 34278784 34279056 -109507399 + AluJo SINE Alu 1 294 -18 609 194 47 23 chr12 34279107 34279236 -109507219 - MER110 LTR ERV1 0 491 360 2228 108 0 3 chr12 34279284 34279581 -109506874 + AluY SINE Alu 1 296 -15 1341 247 60 26 chr12 34279608 34279779 -109506676 - LTR29 LTR ERV1 -4 607 443 2009 142 0 7 chr12 34279779 34280074 -109506381 - AluSx SINE Alu -19 293 1 1341 247 60 26 chr12 34280074 34280378 -109506077 - LTR29 LTR ERV1 -168 443 137 537 30 0 0 chr12 34280418 34280485 -109505970 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1597 177 3 18 chr12 34280487 34280770 -109505685 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 34280771 34280814 -109505641 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2269 94 0 0 chr12 34280814 34281100 -109505355 - AluSq SINE Alu -27 286 1 1700 128 9 122 chr12 34281121 34281335 -109505120 - AluSx SINE Alu -3 309 72 311 0 0 25 chr12 34281335 34281375 -109505080 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2215 79 14 0 chr12 34281377 34281655 -109504800 - AluY SINE Alu -29 282 1 1700 128 9 122 chr12 34281655 34281774 -109504681 - AluSx SINE Alu -241 71 11 268 214 29 0 chr12 34281785 34281855 -109504600 - MER34 LTR ERV1 -470 72 1 1943 133 10 17 chr12 34281970 34282271 -109504184 + AluSx SINE Alu 1 299 -13 1083 153 6 6 chr12 34282275 34282445 -109504010 - MER2 DNA MER2_type -173 172 3 250 346 47 16 chr12 34282484 34282611 -109503844 - L2 LINE L2 -3 3310 3180 2388 67 3 13 chr12 34282731 34283030 -109503425 - AluSg SINE Alu -14 296 1 2573 162 40 120 chr12 34283291 34283615 -109502840 - MER67C LTR ERV1 0 710 362 4050 148 3 3 chr12 34283615 34283730 -109502725 - MER41B LTR ERV1 -1 634 520 2014 145 3 7 chr12 34283730 34284040 -109502415 + AluSg SINE Alu 1 309 -1 4050 148 3 3 chr12 34284040 34284558 -109501897 - MER41B LTR ERV1 -114 521 1 2573 162 40 120 chr12 34284558 34284626 -109501829 - MER67C LTR ERV1 -348 362 290 1838 173 10 19 chr12 34284626 34284939 -109501516 - AluJo SINE Alu -2 310 1 2573 162 40 120 chr12 34284939 34285029 -109501426 - MER67C LTR ERV1 -420 290 194 4153 99 23 44 chr12 34285029 34285100 -109501355 + LTR9B LTR ERV1 1 72 -572 2394 51 0 74 chr12 34285100 34285436 -109501019 - AluY SINE Alu 0 311 1 4153 99 23 44 chr12 34285436 34286022 -109500433 + LTR9B LTR ERV1 72 644 0 2573 162 40 120 chr12 34286022 34286147 -109500308 - MER67C LTR ERV1 -516 194 163 2068 111 4 4 chr12 34286147 34286454 -109500001 + AluSg SINE Alu 1 307 0 2573 162 40 120 chr12 34286454 34286558 -109499897 - MER67C LTR ERV1 -547 163 52 2976 89 13 17 chr12 34286600 34287071 -109499384 - MER4A LTR ERV1 0 664 128 2145 122 0 0 chr12 34287071 34287357 -109499098 - AluSc SINE Alu -22 287 2 402 100 0 0 chr12 34287367 34287427 -109499028 - Alu SINE Alu -10 300 241 1720 146 7 22 chr12 34287432 34287707 -109498748 + AluJb SINE Alu 28 298 -14 2501 97 46 0 chr12 34288218 34288568 -109497887 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 34288568 34288660 -109497795 + AluSx SINE Alu 28 120 -192 857 125 26 33 chr12 34288661 34288813 -109497642 + LTR10E LTR ERV1 481 631 -2 730 205 86 27 chr12 34288817 34289029 -109497426 + HERVI LTR ERV1 5 225 -6424 1566 189 93 0 chr12 34289069 34289392 -109497063 + Harlequin LTR ERV1 2740 3092 -3804 4536 270 11 25 chr12 34289394 34289647 -109496808 + Harlequin LTR ERV1 6413 6668 -1117 2333 70 3 58 chr12 34289647 34289976 -109496479 - AluY SINE Alu 0 311 1 4536 270 11 25 chr12 34289976 34290975 -109495480 + Harlequin LTR ERV1 6668 7647 -138 761 21 11 0 chr12 34291039 34291133 -109495322 + LTR10E LTR ERV1 1 95 -538 2862 123 7 23 chr12 34291134 34291564 -109494891 + LTR10E LTR ERV1 210 632 -1 1472 102 0 15 chr12 34291577 34291782 -109494673 + AluSx SINE Alu 105 306 -6 915 190 0 0 chr12 34291794 34291952 -109494503 + AluSq SINE Alu 131 288 -25 1918 134 0 11 chr12 34291958 34292234 -109494221 + AluSx SINE Alu 1 273 -39 690 190 0 28 chr12 34292246 34292425 -109494030 + GA-rich Low_complexity Low_complexity 3 176 0 807 99 22 39 chr12 34292441 34292623 -109493832 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 378 110 30 40 chr12 34292623 34292723 -109493732 + GA-rich Low_complexity Low_complexity 4 102 0 1898 130 3 33 chr12 34292738 34293038 -109493417 + AluSq SINE Alu 16 306 -7 1861 170 0 0 chr12 34293094 34293388 -109493067 + AluJb SINE Alu 1 294 -18 2072 120 0 17 chr12 34293390 34293691 -109492764 + AluSq SINE Alu 1 296 -17 1088 193 8 42 chr12 34294186 34294445 -109492010 - LTR16C LTR ERVL -9 482 233 1786 175 16 6 chr12 34294719 34295034 -109491421 - MER89 LTR ERV1 0 559 242 1691 164 3 17 chr12 34295035 34295322 -109491133 - AluJb SINE Alu -28 284 2 1125 137 6 6 chr12 34295335 34295510 -109490945 + MER89 LTR ERV1 385 559 0 267 291 28 111 chr12 34295516 34295805 -109490650 + L2 LINE L2 2826 3090 -182 221 163 0 41 chr12 34295921 34295970 -109490485 + L2 LINE L2 3226 3272 0 2041 73 0 4 chr12 34296095 34296354 -109490101 + AluY SINE Alu 47 304 -7 736 190 0 0 chr12 34296506 34296627 -109489828 - FLAM_A SINE Alu -11 122 2 1209 267 28 84 chr12 34296918 34297491 -109488964 - MER34 LTR ERV1 -1 541 1 207 188 31 16 chr12 34297517 34297581 -109488874 + (TA)n Simple_repeat Simple_repeat 2 66 0 2267 95 0 7 chr12 34297619 34297923 -109488532 - AluSx SINE Alu -10 302 1 2106 147 0 0 chr12 34298015 34298322 -109488133 - AluJo SINE Alu 0 312 6 2069 112 31 0 chr12 34298332 34298619 -109487836 - AluSx SINE Alu -16 296 1 2306 69 5 161 chr12 34299145 34299580 -109486875 - MER11A LTR ERVK 0 1266 900 3820 77 18 18 chr12 34300221 34300890 -109485565 - MER11A LTR ERVK -499 737 1 1581 159 26 15 chr12 34301168 34301438 -109485017 + AluSg SINE Alu 1 273 -37 2076 140 80 0 chr12 34301469 34302106 -109484349 - MER4B-int LTR ERV1 -1231 5527 1911 289 104 21 21 chr12 34302215 34302263 -109484192 + AluSg SINE Alu 248 295 -6 1608 149 104 7 chr12 34302672 34302941 -109483514 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 34303794 34303824 -109482631 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 34303824 34303982 -109482473 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 34304031 34304138 -109482317 - AluY SINE Alu -7 304 198 2394 80 10 0 chr12 34304326 34304628 -109481827 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 34304633 34304929 -109481526 - AluSx SINE Alu -16 296 1 2161 124 3 0 chr12 34305120 34305418 -109481037 - AluSx SINE Alu -13 299 1 2120 125 7 0 chr12 34305418 34305714 -109480741 - AluSq SINE Alu -15 298 1 234 0 0 0 chr12 34305724 34305750 -109480705 + (T)n Simple_repeat Simple_repeat 1 26 0 283 291 119 0 chr12 34306167 34306301 -109480154 + MIR SINE MIR 79 228 -34 1263 142 17 43 chr12 34307051 34307283 -109479172 + AluSg/x SINE Alu 83 308 -2 2310 103 0 7 chr12 34307587 34307897 -109478558 - AluSx SINE Alu -4 308 1 1689 138 24 71 chr12 34308548 34308737 -109477718 - AluJb SINE Alu 0 307 137 2504 63 0 3 chr12 34308737 34309039 -109477416 - AluY SINE Alu -10 301 1 1689 138 24 71 chr12 34309039 34309170 -109477285 - AluJb SINE Alu -170 137 1 2109 141 0 13 chr12 34309292 34309597 -109476858 - AluSx SINE Alu -11 301 1 2464 73 0 19 chr12 34309903 34310220 -109476235 - AluY SINE Alu 0 311 1 2347 75 34 0 chr12 34310222 34310514 -109475941 - AluSp SINE Alu -11 302 1 1701 191 7 3 chr12 34310515 34310819 -109475636 - AluJo SINE Alu -7 305 1 1018 168 51 141 chr12 34311536 34311939 -109474516 + MER67C LTR ERV1 2 372 -338 391 274 44 15 chr12 34311949 34312084 -109474371 - MLT1A2 LTR MaLR -50 324 186 2786 147 8 24 chr12 34312125 34312509 -109473946 + L1MA7 LINE L1 5787 6163 -128 1863 175 0 13 chr12 34312509 34312817 -109473638 + AluJo SINE Alu 1 304 -8 2786 147 8 24 chr12 34312817 34312923 -109473532 + L1MA7 LINE L1 6163 6269 -22 2145 89 3 0 chr12 34313013 34313322 -109473133 + AluY SINE Alu 1 310 0 755 190 0 0 chr12 34313482 34313624 -109472831 - FLAM_C SINE Alu 0 143 2 1836 170 3 3 chr12 34313636 34313948 -109472507 - AluJb SINE Alu 0 312 1 1887 148 3 17 chr12 34313957 34314116 -109472339 - AluJb SINE Alu -9 293 138 2263 110 0 23 chr12 34314116 34314287 -109472168 - AluSx SINE Alu -11 301 139 1994 110 68 0 chr12 34314287 34314568 -109471887 - AluSx SINE Alu -12 300 1 2263 110 0 23 chr12 34314568 34314704 -109471751 - AluSx SINE Alu -173 139 1 1887 148 3 17 chr12 34314704 34314841 -109471614 - AluJb SINE Alu -164 138 1 1476 211 65 16 chr12 34314888 34315210 -109471245 - MLT1C LTR MaLR 0 467 130 1230 194 61 5 chr12 34315210 34315491 -109470964 + MSTB LTR MaLR 1 328 -100 1874 176 48 53 chr12 34315491 34315953 -109470502 - LTR10B LTR ERV1 0 547 1 686 111 10 0 chr12 34315953 34316052 -109470403 + MSTB LTR MaLR 329 428 -4 610 128 32 72 chr12 34316058 34316183 -109470272 - MLT1C LTR MaLR -334 133 14 1660 158 7 61 chr12 34316394 34316517 -109469938 + AluJb SINE Alu 18 146 -166 2203 110 0 0 chr12 34316517 34316837 -109469618 + AluSx SINE Alu 1 320 0 1660 158 7 61 chr12 34316837 34317009 -109469446 + AluJb SINE Alu 146 298 -14 800 198 95 102 chr12 34317140 34317551 -109468904 - MER92C LTR ERV1 -2 552 57 2282 99 0 13 chr12 34317668 34318003 -109468452 - AluY SINE Alu 0 311 1 2164 97 23 16 chr12 34318033 34318343 -109468112 - AluSp SINE Alu -1 312 1 2215 128 0 0 chr12 34318355 34318652 -109467803 - AluSx SINE Alu -15 297 1 1951 123 33 0 chr12 34318659 34318814 -109467641 - AluSg SINE Alu -22 288 119 234 0 0 0 chr12 34318814 34318840 -109467615 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1951 123 33 0 chr12 34318840 34318960 -109467495 - AluSg SINE Alu -191 119 4 259 170 0 21 chr12 34318968 34319015 -109467440 - MER92B LTR ERV1 -588 48 3 1209 273 120 27 chr12 34319219 34319812 -109466643 + Charlie7 DNA MER1_type 8 655 -1957 283 241 0 25 chr12 34319827 34319906 -109466549 + Charlie7 DNA MER1_type 2193 2269 -343 1903 108 0 0 chr12 34319906 34320156 -109466299 + AluSx SINE Alu 1 250 -62 464 136 0 0 chr12 34320157 34320267 -109466188 + AluSg/x SINE Alu 213 322 0 2254 95 0 7 chr12 34320293 34320589 -109465866 + MER1B DNA MER1_type 46 339 0 673 157 19 50 chr12 34320725 34320884 -109465571 - LTR37B LTR ERV1 0 468 315 2817 177 21 23 chr12 34320896 34321411 -109465044 + MLT2B3 LTR ERVL 1 514 -40 278 95 0 24 chr12 34321442 34321484 -109464971 + MLT2B3 LTR ERVL 506 546 -8 4396 127 55 24 chr12 34321532 34322158 -109464297 + Tigger3b DNA MER2_type 1 655 -2373 2355 100 3 0 chr12 34322158 34322457 -109463998 - AluSg SINE Alu -10 300 1 4396 127 55 24 chr12 34322457 34322571 -109463884 + Tigger3b DNA MER2_type 655 764 -467 1314 138 14 14 chr12 34322578 34322788 -109463667 + AluJo SINE Alu 85 294 -18 1436 124 5 5 chr12 34322809 34323018 -109463437 + AluJb SINE Alu 89 297 -15 939 115 47 0 chr12 34323038 34323181 -109463274 + Tigger3b DNA MER2_type 778 927 -304 1570 161 193 45 chr12 34323181 34323585 -109462870 + LTR44 LTR ERV1 1 464 -55 496 81 0 68 chr12 34323575 34323623 -109462832 + Tigger3b DNA MER2_type 1097 1140 -1888 * 1025 268 52 69 chr12 34323623 34324302 -109462153 + PABL_B LTR ERV1 1 667 0 496 81 0 68 chr12 34324302 34324327 -109462128 + Tigger3b DNA MER2_type 1140 1165 -66 180 0 0 0 chr12 34324352 34324372 -109462083 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 34324374 34324523 -109461932 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 34324523 34324818 -109461637 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 34324818 34324951 -109461504 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 34324951 34325005 -109461450 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 34325005 34325276 -109461179 + Tigger3b DNA MER2_type 925 1230 -2 320 174 12 58 chr12 34325296 34325382 -109461073 - LTR37B LTR ERV1 -243 225 144 543 292 39 7 chr12 34325401 34325555 -109460900 + MER58A DNA MER1_type 14 172 -52 3266 96 12 2 chr12 34325682 34326110 -109460345 + LTR3 LTR ERVK 1 432 0 4310 92 0 0 chr12 34326212 34326766 -109459689 + MER41A LTR ERV1 1 554 0 279 164 0 18 chr12 34326766 34326821 -109459634 - LTR37B LTR ERV1 -408 60 7 180 225 0 0 chr12 34326905 34326945 -109459510 - L2 LINE L2 -5 3308 3269 2503 80 0 0 chr12 34327040 34327340 -109459115 - AluY SINE Alu -11 300 1 1680 213 48 23 chr12 34327458 34327537 -109458918 + L1M4 LINE L1 4713 4789 -1357 1264 191 28 101 chr12 34327537 34327924 -109458531 + MLT1A1 LTR MaLR 5 363 -2 1680 213 48 23 chr12 34327924 34328277 -109458178 + L1M4 LINE L1 4789 5156 -990 502 209 0 0 chr12 34328378 34328483 -109457972 + AluSg/x SINE Alu 208 312 0 260 285 69 28 chr12 34328713 34328857 -109457598 + MIR SINE MIR 73 222 -40 228 67 0 0 chr12 34329221 34329251 -109457204 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 56 70 0 chr12 34329972 34330043 -109456412 - AluY SINE Alu -22 289 214 296 233 120 38 chr12 34330044 34330177 -109456278 - L1ME4a LINE L1 -177 5944 5801 1421 194 54 4 chr12 34330258 34330536 -109455919 + AluJb SINE Alu 1 292 -20 2525 81 67 20 chr12 34330784 34331142 -109455313 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 34331612 34331744 -109454711 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 34331976 34332260 -109454195 + AluY SINE Alu 1 292 -19 2009 153 3 0 chr12 34333075 34333399 -109453056 - AluJb SINE Alu 0 325 1 21 0 0 0 chr12 34333404 34333425 -109453030 + AT_rich Low_complexity Low_complexity 1 21 0 1889 165 3 3 chr12 34333708 34333999 -109452456 + AluJb SINE Alu 1 291 -21 396 0 0 0 chr12 34334026 34334070 -109452385 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 365 267 12 0 chr12 34334126 34334212 -109452243 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 34334343 34334498 -109451957 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 34334646 34334746 -109451709 - MIR SINE MIR -1 261 163 2121 126 3 0 chr12 34336137 34336431 -109450024 - AluSq SINE Alu -18 295 1 2160 121 3 0 chr12 34336725 34337023 -109449432 + AluSx SINE Alu 1 299 -13 380 295 39 34 chr12 34337303 34337537 -109448918 + L1M4 LINE L1 4698 4932 -1214 1065 121 0 0 chr12 34337678 34337827 -109448628 + AluSg/x SINE Alu 161 309 -1 4971 112 17 50 chr12 34337912 34338395 -109448060 + MER4E LTR ERV1 1 449 -330 2148 126 3 3 chr12 34338395 34338705 -109447750 - AluSg SINE Alu 0 310 1 4971 112 17 50 chr12 34338705 34339026 -109447429 + MER4E LTR ERV1 449 779 0 2405 97 0 0 chr12 34339075 34339374 -109447081 - AluSx SINE Alu -13 299 1 30 0 0 0 chr12 34339511 34339541 -109446914 + AT_rich Low_complexity Low_complexity 1 30 0 983 179 131 84 chr12 34339556 34339702 -109446753 - MER2 DNA MER2_type -34 311 173 1356 101 101 0 chr12 34339702 34339911 -109446544 + MER30 DNA MER1_type 1 230 0 2315 48 39 32 chr12 34339913 34340222 -109446233 - AluY SINE Alu 0 311 1 983 179 131 84 chr12 34340222 34340369 -109446086 - MER2 DNA MER2_type -172 173 1 1504 257 62 45 chr12 34340385 34340445 -109446010 - MER20B DNA MER1_type -213 570 513 5495 74 22 24 chr12 34340445 34341179 -109445276 + MER4E LTR ERV1 1 735 -31 2493 58 3 0 chr12 34341179 34341471 -109444984 + AluY SINE Alu 1 293 -18 5495 74 22 24 chr12 34341471 34341503 -109444952 + MER4E LTR ERV1 735 766 0 1504 257 62 45 chr12 34341503 34341740 -109444715 - MER20B DNA MER1_type -270 513 282 2602 65 0 0 chr12 34341740 34342047 -109444408 + AluSg1 SINE Alu 1 307 -2 1504 257 62 45 chr12 34342047 34342308 -109444147 - MER20B DNA MER1_type -501 282 1 523 0 30 0 chr12 34342594 34342661 -109443794 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 243 172 17 35 chr12 34342664 34342722 -109443733 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 226 164 36 36 chr12 34342741 34342796 -109443659 + L1MC/D LINE L1 5706 5760 -2048 1805 154 58 0 chr12 34342801 34343093 -109443362 - AluSx SINE Alu -1 311 3 294 95 0 0 chr12 34343105 34343147 -109443308 + (TA)n Simple_repeat Simple_repeat 1 42 0 1196 182 88 25 chr12 34343147 34343161 -109443294 - Charlie1b DNA MER1_type -2415 346 334 2248 106 0 0 chr12 34343161 34343454 -109443001 - AluSq SINE Alu -20 293 1 1196 182 88 25 chr12 34343454 34343758 -109442697 - Charlie1b DNA MER1_type -2427 334 8 229 180 60 0 chr12 34343760 34343810 -109442645 + LTR37B LTR ERV1 138 190 -278 2138 117 0 0 chr12 34343837 34344120 -109442335 - AluSx SINE Alu -29 283 1 1658 169 10 29 chr12 34344190 34344552 -109441903 - AluJb SINE Alu 0 358 3 578 228 13 80 chr12 34344577 34344801 -109441654 + LTR37B LTR ERV1 257 465 -3 254 286 42 17 chr12 34344810 34344929 -109441526 - L1MC4 LINE L1 0 8042 7921 395 291 89 19 chr12 34344961 34345119 -109441336 + MER67C LTR ERV1 1 169 -541 251 278 8 30 chr12 34345120 34345253 -109441202 - L1MC4 LINE L1 -224 7818 7689 1663 159 52 4 chr12 34345303 34345427 -109441028 + AluJo SINE Alu 1 118 -194 279 0 0 0 chr12 34345427 34345458 -109440997 + (CA)n Simple_repeat Simple_repeat 2 32 0 1663 159 52 4 chr12 34345458 34345604 -109440851 + AluJo SINE Alu 118 284 -28 358 190 51 13 chr12 34345796 34345875 -109440580 - MLT1L LTR MaLR -8 607 526 881 126 47 0 chr12 34345877 34346004 -109440451 + AluJb SINE Alu 1 133 -179 371 71 0 18 chr12 34346030 34346086 -109440369 + (GGAGAA)n Simple_repeat Simple_repeat 3 57 0 1847 159 0 3 chr12 34346091 34346381 -109440074 + AluJb SINE Alu 12 300 -12 373 269 0 28 chr12 34346546 34346654 -109439801 + LTR67 LTR ERVL 431 535 -22 207 0 0 0 chr12 34347123 34347146 -109439309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 629 157 19 0 chr12 34347414 34347522 -109438933 + FLAM_A SINE Alu 24 133 -9 2078 128 0 10 chr12 34347523 34347819 -109438636 + AluSx SINE Alu 1 293 -19 306 271 42 80 chr12 34348226 34348488 -109437967 - LTR16B LTR ERVL -6 458 207 2342 75 3 3 chr12 34348529 34348821 -109437634 - AluSq SINE Alu -19 294 3 2502 69 0 7 chr12 34348834 34349138 -109437317 - AluY SINE Alu -9 302 1 1396 174 4 32 chr12 34349149 34349402 -109437053 - AluJo SINE Alu -21 291 46 1915 124 0 11 chr12 34349419 34349693 -109436762 - AluY SINE Alu -38 273 3 2432 94 3 0 chr12 34349702 34350011 -109436444 - AluSp SINE Alu -3 310 1 1795 112 0 0 chr12 34350170 34350402 -109436053 + AluSg SINE Alu 61 292 -18 1077 173 0 17 chr12 34350415 34350594 -109435861 + AluSg/x SINE Alu 117 292 -18 606 151 8 59 chr12 34350594 34350713 -109435742 - AluJo/FLAM SINE Alu -190 122 10 1637 154 0 0 chr12 34350726 34350966 -109435489 + AluJo SINE Alu 52 291 -21 298 177 127 28 chr12 34351273 34351363 -109435092 + LTR24B LTR ERV1 1 95 -370 623 268 57 25 chr12 34351404 34351721 -109434734 + LTR24B LTR ERV1 207 533 -43 827 120 92 7 chr12 34351722 34351864 -109434591 - L1PB4 LINE L1 -5 6151 5998 419 29 58 0 chr12 34351864 34351933 -109434522 + (TTTTG)n Simple_repeat Simple_repeat 1 73 0 264 169 197 56 chr12 34351933 34351993 -109434462 - FLAM_A SINE Alu -186 116 41 717 154 0 0 chr12 34351994 34352104 -109434351 - AluSq/x SINE Alu -201 111 2 1341 140 0 0 chr12 34352108 34352308 -109434147 - L1PB4 LINE L1 -158 5998 5799 336 113 38 0 chr12 34352308 34352361 -109434094 + LTR24B LTR ERV1 517 571 -5 421 241 64 80 chr12 34352429 34352678 -109433777 - L1MC5 LINE L1 -457 7504 7260 590 250 91 27 chr12 34352782 34353002 -109433453 - L1MC5 LINE L1 -728 7233 7000 801 174 0 14 chr12 34353071 34353215 -109433240 - FRAM SINE Alu 0 40 1 464 243 33 55 chr12 34353219 34353400 -109433055 - L1MC4 LINE L1 -1000 7042 6866 791 136 21 21 chr12 34353493 34353633 -109432822 - L1ME LINE L1 -689 5475 5336 599 120 11 0 chr12 34353633 34353725 -109432730 + AluSg/x SINE Alu 206 298 -14 247 123 0 70 chr12 34353725 34353782 -109432673 - L1ME LINE L1 -998 5346 5294 207 0 0 0 chr12 34353853 34353876 -109432579 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 257 224 104 0 chr12 34353878 34353945 -109432510 - HsTC2 DNA Tc2 -1820 78 5 2489 80 0 0 chr12 34354491 34354792 -109431663 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34355016 34355038 -109431417 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34355095 34355360 -109431095 - MLT1B LTR MaLR -77 313 24 1147 190 109 78 chr12 34355567 34355581 -109430874 - L1ME LINE L1 -843 5303 5291 2154 131 0 6 chr12 34355581 34355895 -109430560 - AluSx SINE Alu 0 312 1 1147 190 109 78 chr12 34355895 34356224 -109430231 - L1ME LINE L1 -855 5291 4944 1828 175 3 13 chr12 34356224 34356539 -109429916 + AluJb SINE Alu 1 312 0 1147 190 109 78 chr12 34356539 34356589 -109429866 - L1ME LINE L1 -1202 4944 4897 21 36 0 0 chr12 34356878 34356906 -109429549 + AT_rich Low_complexity Low_complexity 1 28 0 2101 106 6 42 chr12 34356947 34357259 -109429196 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 34357779 34357883 -109428572 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 34358683 34358713 -109427742 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 34358713 34359005 -109427450 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 34359038 34359440 -109427015 + MLT1L LTR MaLR 164 602 -13 1070 98 0 0 chr12 34359444 34359587 -109426868 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34359825 34359851 -109426604 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 34359861 34360085 -109426370 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 34360117 34360182 -109426273 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 34360184 34360565 -109425890 - MSTD LTR MaLR 0 396 1 2956 222 63 10 chr12 34360565 34361187 -109425268 - MSTD-int LTR MaLR 0 1735 1081 2455 75 0 0 chr12 34361531 34361825 -109424630 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr12 34361872 34361896 -109424559 + AT_rich Low_complexity Low_complexity 1 24 0 1666 184 10 16 chr12 34361949 34362254 -109424201 - AluJo SINE Alu -9 303 1 214 148 0 56 chr12 34363361 34363415 -109423040 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1930 154 0 19 chr12 34363544 34363856 -109422599 - AluJb SINE Alu -6 306 1 2271 105 7 3 chr12 34363932 34364226 -109422229 - AluSx SINE Alu -17 295 1 204 227 236 45 chr12 34364267 34364377 -109422078 + MIR SINE MIR 20 150 -112 1002 153 0 29 chr12 34364416 34364586 -109421869 + FRAM SINE Alu 1 165 -11 821 143 0 57 chr12 34364729 34364869 -109421586 - FLAM_C SINE Alu 0 133 2 1907 87 80 0 chr12 34365018 34365282 -109421173 - AluSg SINE Alu -25 285 1 3090 154 11 11 chr12 34366039 34366565 -109419890 - L1PA16 LINE L1 0 6166 5641 1456 173 4 0 chr12 34366644 34366881 -109419574 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 34366881 34366997 -109419458 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 34370054 34370107 -109416348 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 200 224 0 59 chr12 34370114 34370199 -109416256 + MIR SINE MIR 183 262 0 330 266 11 11 chr12 34370581 34370675 -109415780 - Zaphod DNA AcHobo 0 4031 3938 529 229 65 18 chr12 34370975 34371145 -109415310 + MIR SINE MIR 15 192 -70 450 184 0 0 chr12 34371145 34371221 -109415234 + AluJ/FLAM SINE Alu 2 77 -235 2517 77 0 6 chr12 34371221 34371533 -109414922 - AluSq SINE Alu -3 310 1 1170 187 113 79 chr12 34371533 34371862 -109414593 - L1M4 LINE L1 -858 5288 4943 1860 171 3 13 chr12 34371862 34372177 -109414278 + AluJb SINE Alu 1 312 0 1170 187 113 79 chr12 34372177 34372226 -109414229 - L1M4 LINE L1 -1203 4943 4897 2074 109 6 42 chr12 34372582 34372894 -109413561 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 34373414 34373518 -109412937 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 34374317 34374347 -109412108 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 34374347 34374639 -109411816 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 34374672 34375074 -109411381 + MLT1L LTR MaLR 164 602 -13 1045 86 7 0 chr12 34375077 34375217 -109411238 - AluSc SINE Alu -1 308 168 26 0 0 0 chr12 34375455 34375481 -109410974 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 34375491 34375715 -109410740 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 34375747 34375812 -109410643 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 34375814 34376195 -109410260 - MSTD LTR MaLR 0 396 1 2795 223 64 13 chr12 34376195 34376818 -109409637 - MSTD-int LTR MaLR 0 1735 1081 2463 71 0 0 chr12 34377162 34377456 -109408999 + AluSg SINE Alu 1 294 -16 2292 92 13 0 chr12 34377461 34377764 -109408691 + AluY SINE Alu 2 308 -3 1662 158 14 4 chr12 34378757 34379057 -109407398 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 34379110 34379404 -109407051 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 34379404 34379702 -109406753 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 34379892 34380188 -109406267 + AluSx SINE Alu 1 296 -16 2273 60 0 122 chr12 34380193 34380546 -109405909 + AluY SINE Alu 2 311 0 469 296 17 43 chr12 34381004 34381237 -109405218 - L2 LINE L2 -55 3258 3032 * 676 191 87 16 chr12 34381233 34381416 -109405039 - L2 LINE L2 -410 2904 2709 761 160 23 0 chr12 34381622 34381753 -109404702 + AluSq/x SINE Alu 2 135 -177 2422 87 0 0 chr12 34381753 34382051 -109404404 + AluSg SINE Alu 1 298 -12 735 241 141 11 chr12 34382398 34382668 -109403787 - L2 LINE L2 -587 2727 2423 2293 112 0 0 chr12 34382824 34383120 -109403335 + AluSx SINE Alu 1 296 -16 212 304 31 31 chr12 34383620 34383781 -109402674 + (CGGGG)n Simple_repeat Simple_repeat 4 164 0 402 168 21 94 chr12 34383805 34383996 -109402459 + (CGGGG)n Simple_repeat Simple_repeat 1 177 0 205 257 0 80 chr12 34383940 34384127 -109402328 + (CGAGG)n Simple_repeat Simple_repeat 1 172 0 * 1087 160 28 19 chr12 34384138 34384350 -109402105 + AluJb SINE Alu 85 298 -14 2501 97 46 0 chr12 34384860 34385210 -109401245 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 34385210 34385302 -109401153 + AluSq/x SINE Alu 28 120 -192 857 125 26 33 chr12 34385303 34385455 -109401000 + LTR10E LTR ERV1 481 631 -2 750 199 86 27 chr12 34385459 34385671 -109400784 + HERVI LTR ERV1 5 225 -6424 1555 192 93 0 chr12 34385711 34386034 -109400421 + Harlequin LTR ERV1 2740 3092 -3804 4499 271 11 25 chr12 34386036 34386289 -109400166 + Harlequin LTR ERV1 6413 6668 -1117 2315 69 3 66 chr12 34386289 34386621 -109399834 - AluY SINE Alu 0 311 1 4499 271 11 25 chr12 34386621 34387620 -109398835 + Harlequin LTR ERV1 6668 7647 -138 420 119 0 79 chr12 34387687 34387788 -109398667 + LTR10E LTR ERV1 2 94 -539 525 238 62 31 chr12 34387810 34388003 -109398452 + LTR10E LTR ERV1 228 426 -207 1645 148 24 71 chr12 34388273 34388462 -109397993 - AluJb SINE Alu 0 307 137 2460 70 0 3 chr12 34388462 34388764 -109397691 - AluY SINE Alu -10 301 1 1645 148 24 71 chr12 34388764 34388895 -109397560 - AluJb SINE Alu -170 137 1 2153 136 0 13 chr12 34389019 34389328 -109397127 - AluSx SINE Alu -7 305 1 2162 88 0 38 chr12 34389649 34389968 -109396487 - AluY SINE Alu -4 307 1 2225 220 23 6 chr12 34390027 34390593 -109395862 - L1M4 LINE L1 -415 5763 5191 490 100 12 25 chr12 34390606 34390686 -109395769 + AluS SINE Alu 1 79 -234 1043 89 14 0 chr12 34390843 34390989 -109395466 + AluSg/x SINE Alu 162 309 0 2395 97 0 6 chr12 34391297 34391608 -109394847 - AluSx SINE Alu -3 309 1 33 25 0 0 chr12 34392092 34392132 -109394323 + AT_rich Low_complexity Low_complexity 1 40 0 337 232 116 36 chr12 34392460 34392598 -109393857 - L1ME4a LINE L1 -6 6115 5967 512 221 41 0 chr12 34392624 34392746 -109393709 - L1ME4a LINE L1 -209 5912 5786 617 170 0 0 chr12 34393068 34393168 -109393287 - AluJb SINE Alu -6 306 207 1984 100 4 0 chr12 34393904 34394163 -109392292 - AluSq SINE Alu -53 260 1 1194 178 92 23 chr12 34394163 34394467 -109391988 - Charlie1b DNA MER1_type -191 332 8 229 180 60 0 chr12 34394469 34394519 -109391936 + LTR37B LTR ERV1 138 190 -278 1825 149 7 0 chr12 34394546 34394827 -109391628 - AluSx SINE Alu -29 283 1 310 160 13 13 chr12 34394896 34394971 -109391484 + CT-rich Low_complexity Low_complexity 2 76 0 1608 149 104 7 chr12 34395857 34396126 -109390329 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 34396979 34397009 -109389446 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 34397009 34397167 -109389288 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 34397216 34397323 -109389132 - AluY SINE Alu -7 304 198 2422 76 10 0 chr12 34397511 34397813 -109388642 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 34397818 34398114 -109388341 - AluSx SINE Alu -16 296 1 2178 121 3 0 chr12 34398304 34398602 -109387853 - AluSx SINE Alu -13 299 1 2218 116 3 0 chr12 34398602 34398896 -109387559 - AluSg SINE Alu -15 295 1 1661 158 14 4 chr12 34398949 34399249 -109387206 - AluJo SINE Alu 0 303 1 453 141 0 0 chr12 34399825 34399889 -109386566 - AluS SINE Alu -247 66 3 2148 125 3 0 chr12 34400187 34400484 -109385971 + AluSq SINE Alu 1 298 -15 231 330 0 10 chr12 34401869 34401969 -109384486 + MIR SINE MIR 163 261 -1 413 262 129 6 chr12 34402117 34402272 -109384183 - MIR SINE MIR -63 145 20 365 267 12 0 chr12 34402403 34402489 -109383966 + MIR SINE MIR 71 157 -105 468 0 0 0 chr12 34402545 34402597 -109383858 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1913 161 3 3 chr12 34402624 34402915 -109383540 - AluJb SINE Alu -21 291 1 21 0 0 0 chr12 34403198 34403219 -109383236 + AT_rich Low_complexity Low_complexity 1 21 0 2007 156 3 13 chr12 34403224 34403567 -109382888 + AluJb SINE Alu 1 312 0 2215 60 32 3 chr12 34404364 34404648 -109381807 - AluY SINE Alu -19 292 1 463 265 30 8 chr12 34404880 34405012 -109381443 - MIR SINE MIR -18 244 110 2570 75 67 20 chr12 34405481 34405839 -109380616 + THE1C LTR MaLR 1 375 0 1517 184 54 4 chr12 34406086 34406364 -109380091 - AluJb SINE Alu -20 292 1 308 211 120 38 chr12 34406445 34406578 -109379877 + L1ME4a LINE L1 5801 5944 -177 507 42 70 0 chr12 34406579 34406650 -109379805 + AluY SINE Alu 214 289 -22 228 67 0 0 chr12 34407368 34407398 -109379057 + (CA)n Simple_repeat Simple_repeat 1 30 0 379 324 56 17 chr12 34407761 34407940 -109378515 - MIR SINE MIR -40 222 37 2489 93 0 0 chr12 34408091 34408447 -109378008 - AluSx SINE Alu 0 356 1 2339 110 7 0 chr12 34408456 34408766 -109377689 - AluSx SINE Alu 0 312 1 3514 199 30 29 chr12 34408884 34408962 -109377493 + L1MB8 LINE L1 4713 4789 -1389 1269 194 29 98 chr12 34408962 34409348 -109377107 + MLT1A1 LTR MaLR 5 363 -2 3514 199 30 29 chr12 34409348 34409729 -109376726 + L1MB8 LINE L1 4789 5168 -1010 1889 126 66 0 chr12 34409729 34410015 -109376440 - AluSx SINE Alu -7 305 1 3514 199 30 29 chr12 34410015 34410654 -109375801 + L1MB8 LINE L1 5168 5812 -366 2351 78 0 69 chr12 34410654 34410801 -109375654 + AluSp SINE Alu 1 115 -198 2388 48 0 21 chr12 34410801 34411126 -109375329 + AluY SINE Alu 1 319 0 2351 78 0 69 chr12 34411126 34411310 -109375145 + AluSp SINE Alu 115 310 -3 3514 199 30 29 chr12 34411310 34411526 -109374929 + L1MB8 LINE L1 5812 6026 -152 8442 51 1 0 chr12 34411526 34412491 -109373964 + LTR5 LTR ERVK 1 966 -3 2223 115 0 0 chr12 34412786 34413073 -109373382 - AluSx SINE Alu -24 288 2 1001 296 89 75 chr12 34413086 34413584 -109372871 + L2 LINE L2 1821 2336 -978 2389 97 0 0 chr12 34413584 34413884 -109372571 + AluSx SINE Alu 1 300 -12 1001 296 89 75 chr12 34413884 34414208 -109372247 + L2 LINE L2 2336 2654 -660 23 0 0 0 chr12 34414241 34414264 -109372191 + AT_rich Low_complexity Low_complexity 1 23 0 852 134 0 16 chr12 34414264 34414391 -109372064 - AluJb SINE Alu -187 125 1 252 334 53 75 chr12 34414396 34414591 -109371864 + L2 LINE L2 2698 2880 -433 1913 142 3 32 chr12 34414591 34414907 -109371548 - AluJo SINE Alu -4 308 2 252 334 53 75 chr12 34414907 34415086 -109371369 + L2 LINE L2 2880 3061 -252 281 230 274 0 chr12 34415180 34415293 -109371162 - MIR SINE MIR -82 180 37 2374 99 3 6 chr12 34415300 34415613 -109370842 - AluSx SINE Alu 0 312 1 1527 203 20 7 chr12 34415613 34415908 -109370547 - AluJo SINE Alu -13 299 1 1959 163 13 0 chr12 34416041 34416347 -109370108 + AluJo SINE Alu 1 310 -2 1997 128 45 3 chr12 34417125 34417414 -109369041 - AluSx SINE Alu -11 301 1 234 0 0 0 chr12 34417424 34417450 -109369005 + (T)n Simple_repeat Simple_repeat 1 26 0 374 278 136 0 chr12 34417866 34418028 -109368427 + MIR SINE MIR 79 262 0 23 0 0 0 chr12 34418721 34418744 -109367711 + GC_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr12 34421541 34421577 -109364878 + AT_rich Low_complexity Low_complexity 1 36 0 2164 36 0 0 chr12 34422775 34423026 -109363429 + L1PA3 LINE L1 5904 6154 -1 1581 102 0 0 chr12 34423620 34423858 -109362597 - AluY SINE Alu 0 313 76 21 89 0 0 chr12 34423859 34423915 -109362540 + AT_rich Low_complexity Low_complexity 1 56 0 2359 102 3 0 chr12 34424028 34424332 -109362123 - AluSp SINE Alu -8 305 1 291 259 64 43 chr12 34424886 34425075 -109361380 - MIR SINE MIR -21 241 50 1160 178 28 112 chr12 34425412 34425733 -109360722 - AluJb SINE Alu -6 296 3 1840 168 0 16 chr12 34425737 34425902 -109360553 - AluSx SINE Alu -14 298 139 2186 102 7 10 chr12 34425902 34426196 -109360259 - AluSg SINE Alu -17 293 1 1840 168 0 16 chr12 34426196 34426333 -109360122 - AluSx SINE Alu -173 139 1 1724 155 11 18 chr12 34426405 34426689 -109359766 - AluJb SINE Alu -10 302 21 23 0 0 0 chr12 34426697 34426720 -109359735 + AT_rich Low_complexity Low_complexity 1 23 0 803 135 0 0 chr12 34427071 34427182 -109359273 - FLAM_C SINE Alu -32 111 1 207 170 0 0 chr12 34427406 34427453 -109359002 + T-rich Low_complexity Low_complexity 1 47 0 300 119 0 0 chr12 34428460 34428519 -109357936 + (TC)n Simple_repeat Simple_repeat 2 60 0 969 184 25 0 chr12 34428541 34428704 -109357751 - AluJ SINE Alu -26 286 120 893 176 0 34 chr12 34428737 34428885 -109357570 - AluJ SINE Alu -169 143 1 610 268 79 30 chr12 34429029 34429294 -109357161 + L3 LINE CR1 1297 1574 -3 375 169 0 0 chr12 34429687 34429758 -109356697 + (TA)n Simple_repeat Simple_repeat 2 72 0 2277 92 7 0 chr12 34429758 34430050 -109356405 - AluSp SINE Alu -19 294 1 2315 64 4 4 chr12 34430062 34430402 -109356053 - AluY SINE Alu 0 340 1 1996 146 30 9 chr12 34430435 34430771 -109355684 - MER2 DNA MER2_type -1 343 1 652 258 184 12 chr12 34430841 34431167 -109355288 - L2 LINE L2 0 3313 2932 339 287 90 36 chr12 34431376 34431543 -109354912 + MER5B DNA MER1_type 2 177 -1 1953 144 4 0 chr12 34431613 34431916 -109354539 + AluSx SINE Alu 3 306 0 205 243 0 0 chr12 34432893 34432930 -109353525 + polypurine Low_complexity Low_complexity 2 38 0 2080 135 0 3 chr12 34432986 34433289 -109353166 - AluSx SINE Alu -10 302 1 2264 60 0 122 chr12 34433338 34433690 -109352765 + AluY SINE Alu 1 309 -2 454 300 17 43 chr12 34434146 34434379 -109352076 - L2 LINE L2 -55 3258 3032 * 658 197 87 16 chr12 34434375 34434558 -109351897 - L2 LINE L2 -410 2904 2709 2306 84 3 3 chr12 34434766 34435065 -109351390 + AluSx SINE Alu 1 299 -13 196 288 17 0 chr12 34435356 34435415 -109351040 - L2 LINE L2 0 3272 3213 409 274 149 19 chr12 34435509 34435717 -109350738 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 34435730 34435760 -109350695 + (TAA)n Simple_repeat Simple_repeat 2 32 0 194 291 114 39 chr12 34435780 34436034 -109350421 - L2 LINE L2 -189 3083 2811 215 300 22 22 chr12 34436652 34436742 -109349713 - L2 LINE L2 -541 2773 2684 1917 151 3 20 chr12 34436933 34437238 -109349217 + AluJb SINE Alu 1 300 -12 2220 120 0 17 chr12 34437646 34437947 -109348508 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr12 34437957 34437985 -109348470 + AT_rich Low_complexity Low_complexity 1 28 0 1080 268 45 53 chr12 34438040 34438796 -109347659 - L1MC/D LINE L1 -743 5403 4698 2299 109 0 0 chr12 34439075 34439377 -109347078 - AluSx SINE Alu -10 302 1 925 233 0 0 chr12 34439935 34440111 -109346344 - AluJb SINE Alu -3 309 134 2012 130 27 0 chr12 34440111 34440404 -109346051 - AluSx SINE Alu -11 301 1 2291 57 46 0 chr12 34440944 34441227 -109345228 - AluY SINE Alu -15 296 1 2147 114 10 0 chr12 34441582 34441871 -109344584 - AluSx SINE Alu -20 292 1 23 0 0 0 chr12 34441999 34442022 -109344433 + AT_rich Low_complexity Low_complexity 1 23 0 551 284 77 82 chr12 34442480 34442871 -109343584 - L2 LINE L2 -3 3310 2922 2384 94 0 0 chr12 34442871 34443168 -109343287 + AluSg SINE Alu 1 297 -13 735 241 141 11 chr12 34443515 34443785 -109342670 - L2 LINE L2 -587 2727 2423 2262 115 0 0 chr12 34443941 34444237 -109342218 + AluSx SINE Alu 1 296 -16 2411 80 0 0 chr12 34444517 34444816 -109341639 - AluY SINE Alu -12 299 1 325 311 22 49 chr12 34445180 34445363 -109341092 + L3 LINE CR1 1328 1505 -72 278 303 30 20 chr12 34445654 34445753 -109340702 + Charlie8 DNA MER1_type 121 220 -2197 316 119 45 0 chr12 34445757 34445824 -109340631 + C-rich Low_complexity Low_complexity 3 72 0 2237 114 3 0 chr12 34445824 34446123 -109340332 - AluSx SINE Alu -12 300 1 1713 187 3 7 chr12 34446123 34446422 -109340033 - AluJb SINE Alu 0 312 14 2033 152 0 0 chr12 34447822 34448124 -109338331 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 34448539 34448834 -109337621 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 34448849 34449065 -109337390 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 34449163 34449194 -109337261 + (TA)n Simple_repeat Simple_repeat 1 31 -44 1749 178 8 37 chr12 34449194 34449571 -109336884 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 34449571 34449615 -109336840 + (TA)n Simple_repeat Simple_repeat 31 75 0 222 62 0 0 chr12 34450089 34450121 -109336334 + (TG)n Simple_repeat Simple_repeat 1 32 0 2233 96 7 3 chr12 34450294 34450595 -109335860 - AluSc SINE Alu -7 302 1 185 0 40 0 chr12 34451202 34451227 -109335228 + (TTG)n Simple_repeat Simple_repeat 2 27 0 975 51 8 0 chr12 34451229 34451347 -109335108 - AluSg/x SINE Alu -24 285 167 2353 89 3 0 chr12 34452207 34452509 -109333946 - AluSx SINE Alu -9 303 1 218 245 137 20 chr12 34452586 34452688 -109333767 + L2 LINE L2 3197 3310 -3 2339 99 3 3 chr12 34452859 34453172 -109333283 + AluSq SINE Alu 1 313 0 416 50 0 17 chr12 34453180 34453240 -109333215 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 188 235 61 52 chr12 34453708 34453823 -109332632 + L2 LINE L2 3080 3195 -118 1759 235 97 67 chr12 34453872 34454922 -109331533 - L1ME3A LINE L1 -16 6154 5078 511 311 0 0 chr12 34456652 34456774 -109329681 - L2 LINE L2 -14 3258 3137 204 297 81 43 chr12 34457019 34457204 -109329251 - L2 LINE L2 -858 2456 2265 478 204 12 31 chr12 34457504 34457666 -109328789 + CT-rich Low_complexity Low_complexity 4 162 0 1693 177 37 3 chr12 34457673 34457967 -109328488 - AluJo SINE Alu -8 304 1 1707 194 0 10 chr12 34458592 34458891 -109327564 + AluJb SINE Alu 1 296 -16 2008 150 0 0 chr12 34459474 34459768 -109326687 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 34460425 34460627 -109325828 - MLT1A1 LTR MaLR -73 292 85 2710 109 37 0 chr12 34460627 34460977 -109325478 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 34460977 34461063 -109325392 - MLT1A1 LTR MaLR -280 85 1 277 238 32 0 chr12 34461412 34461475 -109324980 - MER91B DNA MER1_type -125 65 1 2158 96 0 0 chr12 34462691 34462972 -109323483 - AluSx SINE Alu -11 301 21 1560 164 96 11 chr12 34462981 34463261 -109323194 - AluJo SINE Alu -8 304 1 3251 153 11 11 chr12 34463648 34464172 -109322283 - L1PA16 LINE L1 -2 6164 5641 1437 173 4 0 chr12 34464251 34464488 -109321967 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 34464488 34464604 -109321851 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 34467664 34467717 -109318738 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 221 224 0 59 chr12 34467724 34467809 -109318646 + MIR SINE MIR 183 262 0 332 266 11 11 chr12 34468192 34468286 -109318169 - Zaphod DNA AcHobo 0 4031 3938 586 229 65 18 chr12 34468586 34468756 -109317699 + MIR SINE MIR 15 192 -70 706 153 21 90 chr12 34468756 34468832 -109317623 + AluJb SINE Alu 2 65 -247 2467 80 0 6 chr12 34468832 34469144 -109317311 - AluSq SINE Alu -3 310 1 706 153 21 90 chr12 34469144 34469211 -109317244 + AluJb SINE Alu 65 135 -177 248 267 107 0 chr12 34469230 34469305 -109317150 + MIR SINE MIR 180 262 0 354 266 65 57 chr12 34469505 34469629 -109316826 + L2 LINE L2 3145 3269 -3 2255 100 3 0 chr12 34469678 34469969 -109316486 - AluSx SINE Alu -20 292 1 464 267 71 53 chr12 34470662 34470887 -109315568 + MIR SINE MIR 32 260 -2 346 333 23 38 chr12 34472458 34472590 -109313865 + L2 LINE L2 3137 3266 -6 353 274 58 16 chr12 34473185 34473358 -109313097 + MIR SINE MIR 81 261 -1 3370 155 42 33 chr12 34473413 34473435 -109313020 + L1MB8 LINE L1 5146 5166 -1012 1758 133 0 84 chr12 34473435 34473757 -109312698 + AluJo SINE Alu 1 295 -17 3370 155 42 33 chr12 34473757 34474512 -109311943 + L1MB8 LINE L1 5166 5919 -259 1847 150 6 26 chr12 34474512 34474825 -109311630 - AluJb SINE Alu -5 307 1 487 283 0 26 chr12 34475028 34475180 -109311275 + MIR SINE MIR 70 217 -45 506 312 7 0 chr12 34476156 34476294 -109310161 + MER91B DNA MER1_type 1 139 -51 6046 48 39 17 chr12 34476445 34476999 -109309456 + MER4E LTR ERV1 1 577 -189 2426 79 3 10 chr12 34476999 34477303 -109309152 - AluSc SINE Alu -7 302 1 6046 48 39 17 chr12 34477303 34477498 -109308957 + MER4E LTR ERV1 577 766 0 638 147 101 0 chr12 34477660 34477789 -109308666 - L1MA8 LINE L1 -2 6289 6148 659 62 73 0 chr12 34478278 34478374 -109308081 - L1MA8 LINE L1 -141 6150 6048 1281 28 0 0 chr12 34478595 34478739 -109307716 + L1PA5 LINE L1 6011 6154 0 921 187 39 124 chr12 34478840 34479171 -109307284 + MER46C DNA MER2_type 20 322 -16 27 49 0 0 chr12 34479592 34479633 -109306822 + AT_rich Low_complexity Low_complexity 1 41 0 669 241 21 7 chr12 34479668 34479813 -109306642 - MER58A DNA MER1_type 0 154 8 424 254 25 8 chr12 34479820 34479938 -109306517 - L2 LINE L2 -504 2810 2691 942 125 6 85 chr12 34479940 34480018 -109306437 + FRAM SINE Alu 1 59 -253 2153 123 0 7 chr12 34480018 34480319 -109306136 - AluSx SINE Alu -13 299 1 942 125 6 85 chr12 34480319 34480416 -109306039 + FRAM SINE Alu 59 162 -14 440 295 199 35 chr12 34480428 34480794 -109305661 - L2 LINE L2 -614 2700 2275 1396 293 119 33 chr12 34480800 34481506 -109304949 - L2 LINE L2 -1971 1343 577 252 232 14 29 chr12 34481522 34481591 -109304864 + MIR SINE MIR 81 148 -60 878 112 0 0 chr12 34482296 34482412 -109304043 + AluSq/x SINE Alu 1 116 -196 728 156 0 0 chr12 34482430 34482539 -109303916 + AluJb SINE Alu 196 304 -8 2355 104 0 3 chr12 34482617 34482924 -109303531 + AluSx SINE Alu 1 306 -6 1271 189 0 9 chr12 34482950 34483162 -109303293 + AluJo SINE Alu 3 212 -100 250 282 107 0 chr12 34483431 34483534 -109302921 + L1MC4a LINE L1 5687 5800 -2008 528 201 255 27 chr12 34483686 34483835 -109302620 - AluSg/x SINE Alu -16 294 112 1564 196 24 0 chr12 34483835 34484131 -109302324 - AluJo SINE Alu -9 303 1 325 291 177 44 chr12 34484133 34484336 -109302119 - L1MC/D LINE L1 -469 5652 5444 335 268 52 31 chr12 34484720 34484817 -109301638 - L2 LINE L2 -42 3230 3132 507 332 142 23 chr12 34484927 34485279 -109301176 - L2 LINE L2 -418 2896 2503 1914 147 3 3 chr12 34485626 34485919 -109300536 + AluSx SINE Alu 18 310 -2 553 287 77 40 chr12 34486338 34486610 -109299845 - L2 LINE L2 0 3313 3032 * 721 182 86 27 chr12 34486602 34486789 -109299666 - L2 LINE L2 -408 2906 2709 2083 114 0 20 chr12 34486997 34487296 -109299159 + AluSx SINE Alu 1 293 -19 353 265 53 29 chr12 34487446 34487616 -109298839 + L1MC4a LINE L1 5880 6053 -1755 22 0 0 0 chr12 34488033 34488055 -109298400 + AT_rich Low_complexity Low_complexity 1 22 0 1981 127 0 0 chr12 34488383 34488659 -109297796 + AluSx SINE Alu 1 276 -36 414 0 0 0 chr12 34488666 34488712 -109297743 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 231 233 183 0 chr12 34489080 34489200 -109297255 + L1ME4a LINE L1 5977 6118 -3 1504 165 0 90 chr12 34490260 34490581 -109295874 + AluJo SINE Alu 3 294 -18 650 192 0 0 chr12 34490674 34490773 -109295682 + AluJ/FLAM SINE Alu 3 101 -211 2409 48 3 3 chr12 34490917 34491206 -109295249 + AluY SINE Alu 1 289 -22 2031 112 7 7 chr12 34493382 34493693 -109292762 + AluSq SINE Alu 1 311 0 473 110 0 0 chr12 34493693 34493766 -109292689 + AluSp/q SINE Alu 236 308 -5 1463 194 0 38 chr12 34494322 34494636 -109291819 - AluJo SINE Alu -10 302 1 1577 153 49 65 chr12 34494703 34495011 -109291444 - AluJb SINE Alu -9 303 1 2163 142 173 14 chr12 34495013 34495532 -109290923 + MER39 LTR ERV1 44 686 -21 1024 186 145 9 chr12 34495532 34495753 -109290702 - AluSg SINE Alu -59 251 1 761 248 28 64 chr12 34495986 34496268 -109290187 + Charlie2 DNA MER1_type 37 308 -2554 2291 173 165 39 chr12 34496273 34496996 -109289459 + Charlie2 DNA MER1_type 1864 2677 -185 1606 158 32 28 chr12 34497592 34497876 -109288579 - AluSx SINE Alu -27 285 1 1732 139 0 0 chr12 34497975 34498213 -109288242 - AluSx SINE Alu -16 296 59 688 241 76 0 chr12 34498272 34498430 -109288025 - MER96 DNA MER1_type -4 171 2 3383 72 7 35 chr12 34498562 34498720 -109287735 + MER41A LTR ERV1 1 162 -392 2194 114 7 0 chr12 34498720 34499026 -109287429 + AluSg SINE Alu 1 308 -2 3383 72 7 35 chr12 34499026 34499328 -109287127 + MER41A LTR ERV1 162 448 -106 884 98 8 0 chr12 34500056 34500188 -109286267 + MER41B LTR ERV1 503 635 0 743 147 0 0 chr12 34500199 34500301 -109286154 + FLAM_C SINE Alu 22 123 -20 183 42 0 0 chr12 34500302 34500326 -109286129 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2239 113 0 13 chr12 34500334 34500645 -109285810 + AluSc SINE Alu 1 307 -2 385 281 170 0 chr12 34500736 34500889 -109285566 - MER91A DNA MER1_type 0 196 18 557 191 37 15 chr12 34501262 34501398 -109285057 - MIR SINE MIR 0 262 124 211 235 61 52 chr12 34502269 34502384 -109284071 - L2 LINE L2 -118 3195 3080 416 50 0 17 chr12 34502852 34502912 -109283543 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2301 96 3 10 chr12 34502919 34503233 -109283222 - AluSq SINE Alu -1 312 1 249 245 137 20 chr12 34503404 34503506 -109282949 - L2 LINE L2 -3 3310 3197 2359 90 0 0 chr12 34503583 34503883 -109282572 + AluSx SINE Alu 1 300 -12 240 234 16 16 chr12 34504882 34504946 -109281509 + MLT1J2 LTR MaLR 72 135 -315 1456 241 92 53 chr12 34504957 34505527 -109280928 - MER21A LTR ERV1 -46 885 179 2055 126 0 10 chr12 34506321 34506623 -109279832 - AluSx SINE Alu -13 299 1 235 321 122 15 chr12 34506737 34506868 -109279587 + MIR SINE MIR 62 206 -56 888 177 0 43 chr12 34506919 34507083 -109279372 - FRAM SINE Alu -13 163 7 345 238 111 35 chr12 34508007 34508179 -109278276 + Charlie7 DNA MER1_type 2419 2603 -9 705 155 39 23 chr12 34508180 34508309 -109278146 + AluSq/x SINE Alu 2 132 -181 2153 131 6 10 chr12 34508446 34508759 -109277696 + AluSx SINE Alu 1 312 0 359 277 10 0 chr12 34509035 34509136 -109277319 - MIR SINE MIR -57 205 104 1637 162 27 40 chr12 34509137 34509433 -109277022 - AluJo SINE Alu -15 297 6 2043 117 28 0 chr12 34509808 34510099 -109276356 - AluSx SINE Alu -13 299 1 1880 153 57 33 chr12 34510158 34510524 -109275931 - THE1C LTR MaLR 0 375 1 676 140 15 88 chr12 34511002 34511138 -109275317 - FLAM_C SINE Alu 0 143 18 214 148 0 56 chr12 34512071 34512125 -109274330 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1965 159 0 3 chr12 34512254 34512563 -109273892 - AluJb SINE Alu -4 308 1 1154 193 15 36 chr12 34512591 34512865 -109273590 - LTR29 LTR ERV1 -218 404 137 537 30 0 0 chr12 34512904 34512971 -109273484 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1582 177 3 18 chr12 34512973 34513256 -109273199 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 34513257 34513300 -109273155 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2107 122 0 0 chr12 34513300 34513586 -109272869 - AluSq SINE Alu -27 286 1 562 135 87 0 chr12 34513608 34513712 -109272743 + L1MB5 LINE L1 5403 5515 -663 630 144 99 0 chr12 34513712 34513807 -109272648 + L1MB5 LINE L1 6045 6166 -8 444 189 21 0 chr12 34513814 34513909 -109272546 - Charlie5 DNA MER1_type -2502 110 14 23 0 0 0 chr12 34514024 34514047 -109272408 + AT_rich Low_complexity Low_complexity 1 23 0 250 319 178 6 chr12 34514998 34515155 -109271300 + MIR SINE MIR 48 231 -31 228 306 0 0 chr12 34515325 34515387 -109271068 - MER5A DNA MER1_type 0 189 128 1255 190 31 19 chr12 34515390 34515648 -109270807 + AluJo SINE Alu 45 305 -7 402 185 0 4 chr12 34515653 34515724 -109270731 - MER5A DNA MER1_type -82 99 38 185 255 39 0 chr12 34516204 34516255 -109270200 - L2 LINE L2 -80 3233 3181 216 152 0 43 chr12 34516628 34516674 -109269781 + A-rich Low_complexity Low_complexity 2 45 0 416 173 0 86 chr12 34517065 34517204 -109269251 - FLAM_C SINE Alu -6 127 1 471 223 134 32 chr12 34517551 34517708 -109268747 + MIR SINE MIR 83 255 -7 1792 169 0 6 chr12 34518721 34519034 -109267421 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 34519057 34519089 -109267366 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 34519108 34519129 -109267326 + AT_rich Low_complexity Low_complexity 1 21 0 1562 174 10 27 chr12 34519252 34519545 -109266910 - AluJb SINE Alu -24 288 1 6009 125 44 26 chr12 34520179 34521525 -109264930 - L1MA6 LINE L1 -6 6294 4937 928 255 111 36 chr12 34521532 34521716 -109264739 - L1MC4 LINE L1 -135 7907 7738 1566 156 85 0 chr12 34521716 34521986 -109264469 - AluSx SINE Alu -19 293 1 928 255 111 36 chr12 34521986 34522468 -109263987 - L1MC4 LINE L1 -304 7738 7120 301 161 86 25 chr12 34522484 34522565 -109263890 - L1MC4 LINE L1 -1102 6940 6855 5276 104 19 51 chr12 34522937 34523420 -109263035 + MER4E LTR ERV1 1 449 -330 2162 123 3 3 chr12 34523420 34523730 -109262725 - AluSg SINE Alu 0 310 1 5276 104 19 51 chr12 34523730 34524051 -109262404 + MER4E LTR ERV1 449 779 0 2241 104 7 3 chr12 34524100 34524398 -109262057 - AluSx SINE Alu -13 299 1 753 233 0 0 chr12 34524422 34524555 -109261900 - FLAM_C SINE Alu 0 133 1 5065 233 21 17 chr12 34524566 34526279 -109260176 - L1PBa LINE L1 -5220 984 1 1169 180 14 178 chr12 34527864 34527979 -109258476 + AluSx SINE Alu 4 136 -166 2246 117 0 0 chr12 34527979 34528287 -109258168 + AluY SINE Alu 1 308 -3 1169 180 14 178 chr12 34528287 34528526 -109257929 + AluSx SINE Alu 136 300 -2 1675 99 5 0 chr12 34528526 34528749 -109257706 + AluSq SINE Alu 82 305 -8 192 40 0 0 chr12 34528940 34528965 -109257490 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1587 193 25 0 chr12 34528969 34529243 -109257212 - AluJb SINE Alu -31 281 1 549 0 0 0 chr12 34529433 34529494 -109256961 + (TATTG)n Simple_repeat Simple_repeat 1 61 0 1017 179 0 0 chr12 34530268 34530441 -109256014 - FRAM SINE Alu -9 167 1 1844 127 56 18 chr12 34530445 34530608 -109255847 - AluSq SINE Alu -18 295 140 360 0 0 0 chr12 34530608 34530648 -109255807 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2239 82 4 0 chr12 34530648 34530928 -109255527 - AluSp SINE Alu -31 282 2 1844 127 56 18 chr12 34530928 34531047 -109255408 - AluSq SINE Alu -172 141 1 551 254 18 0 chr12 34531080 34531194 -109255261 + FLAM_C SINE Alu 3 118 -25 2426 76 0 3 chr12 34531246 34531547 -109254908 - AluSx SINE Alu -12 300 1 421 256 60 23 chr12 34531558 34531691 -109254764 - HERVL LTR ERVL -2146 3508 3371 22 35 0 0 chr12 34532076 34532105 -109254350 + AT_rich Low_complexity Low_complexity 1 29 0 2173 101 28 0 chr12 34532318 34532605 -109253850 + AluSg SINE Alu 1 295 -15 213 390 20 0 chr12 34532703 34532803 -109253652 + L2 LINE L2 3179 3280 -33 200 390 59 43 chr12 34533006 34533193 -109253262 + L2 LINE L2 2634 2823 -491 1444 145 114 8 chr12 34533510 34533772 -109252683 + AluJo SINE Alu 10 299 -13 4449 163 85 51 chr12 34534063 34534672 -109251783 + L1PB2 LINE L1 4216 4803 -1348 2136 123 0 0 chr12 34534672 34534964 -109251491 + AluSx SINE Alu 11 302 -10 4449 163 85 51 chr12 34534964 34536127 -109250328 + L1PB2 LINE L1 4803 6052 -99 839 139 19 13 chr12 34536775 34536933 -109249522 - AluY SINE Alu 0 311 153 226 161 0 48 chr12 34536960 34537022 -109249433 + CT-rich Low_complexity Low_complexity 1 59 0 1805 170 23 10 chr12 34537022 34537328 -109249127 - AluSx SINE Alu -2 310 1 229 258 0 16 chr12 34537440 34537502 -109248953 - L1ME LINE L1 -537 5584 5524 947 198 119 34 chr12 34537542 34537835 -109248620 - L1ME1 LINE L1 -10 6156 5839 670 287 137 18 chr12 34538353 34538688 -109247767 - L2 LINE L2 -22 3291 2917 2182 112 0 0 chr12 34538886 34539182 -109247273 + AluY SINE Alu 1 296 -15 2170 94 0 42 chr12 34539188 34539495 -109246960 + AluSg1 SINE Alu 1 294 -15 1323 192 63 15 chr12 34539628 34539899 -109246556 - AluJb SINE Alu -28 284 1 2293 99 3 0 chr12 34540308 34540610 -109245845 + AluY SINE Alu 1 303 -8 237 229 71 14 chr12 34540806 34540876 -109245579 + L1MC/D LINE L1 5826 5899 -1909 213 306 134 8 chr12 34541933 34542067 -109244388 - MER5A DNA MER1_type 0 189 39 2193 111 0 3 chr12 34542445 34542742 -109243713 - AluSx SINE Alu -16 296 1 2152 110 3 3 chr12 34542744 34543036 -109243419 - AluSc SINE Alu -17 292 1 2105 151 20 67 chr12 34543038 34543258 -109243197 + MER4E LTR ERV1 268 458 -321 1719 182 0 19 chr12 34543258 34543565 -109242890 - AluJb SINE Alu -11 301 1 2105 151 20 67 chr12 34543565 34543795 -109242660 + MER4E LTR ERV1 458 697 -82 54 16 0 0 chr12 34543898 34543959 -109242496 + AT_rich Low_complexity Low_complexity 1 61 0 1483 178 31 34 chr12 34544025 34544318 -109242137 + AluJb SINE Alu 4 295 -17 1879 144 11 0 chr12 34544461 34544746 -109241709 + AluSx SINE Alu 13 300 -12 561 150 20 0 chr12 34545681 34545781 -109240674 + AluJb SINE Alu 199 300 -12 1813 178 111 111 chr12 34545989 34546063 -109240392 + MLT2B2 LTR ERVL 1 74 -441 2172 97 30 0 chr12 34546063 34546361 -109240094 + AluSx SINE Alu 1 307 -5 1813 178 111 111 chr12 34546361 34546538 -109239917 + MLT2B2 LTR ERVL 74 250 -265 2021 119 23 20 chr12 34546538 34546841 -109239614 + AluSx SINE Alu 1 304 -8 1813 178 111 111 chr12 34546841 34547095 -109239360 + MLT2B2 LTR ERVL 249 507 -8 517 86 0 0 chr12 34547347 34547417 -109239038 - AluSp/q SINE Alu -11 302 233 1720 146 11 7 chr12 34547417 34547697 -109238758 + AluJb SINE Alu 22 302 -10 320 231 103 79 chr12 34547700 34547903 -109238552 - MLT1J LTR MaLR -66 445 238 2013 132 3 7 chr12 34547971 34548267 -109238188 + AluSx SINE Alu 1 295 -17 231 246 18 0 chr12 34548487 34548544 -109237911 - L1MC4 LINE L1 -192 7850 7793 622 125 0 0 chr12 34548643 34548731 -109237724 - AluSp/q SINE Alu -9 304 217 2249 101 13 0 chr12 34548773 34549079 -109237376 - AluY SINE Alu -1 310 1 375 179 60 0 chr12 34549080 34549164 -109237291 - L1MC/D LINE L1 -2368 5440 5352 180 152 0 0 chr12 34549217 34549250 -109237205 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 228 264 64 64 chr12 34549754 34549832 -109236623 - L2 LINE L2 -10 3262 3182 1739 148 30 33 chr12 34549832 34550136 -109236319 + AluJo SINE Alu 1 303 -9 228 264 64 64 chr12 34550136 34550167 -109236288 - L2 LINE L2 -89 3183 3153 220 323 182 0 chr12 34551273 34551372 -109235083 - MIR SINE MIR -72 190 74 4666 146 126 88 chr12 34551639 34552219 -109234236 - L1MCa LINE L1 -4502 1924 1368 385 123 31 0 chr12 34552219 34552284 -109234171 + MADE1 DNA Mariner 1 67 -13 4666 146 126 88 chr12 34552284 34552680 -109233775 - L1MCa LINE L1 -5058 1368 989 2101 128 20 0 chr12 34552680 34552985 -109233470 + AluSq SINE Alu 1 311 -2 4666 146 126 88 chr12 34552985 34553222 -109233233 - L1MCa LINE L1 -5437 989 597 312 27 0 0 chr12 34553552 34553589 -109232866 + (CA)n Simple_repeat Simple_repeat 2 38 0 666 160 0 19 chr12 34553640 34553746 -109232709 - FRAM SINE Alu -4 172 69 1930 142 0 0 chr12 34554128 34554409 -109232046 + AluSq SINE Alu 1 281 -32 545 126 262 39 chr12 34554518 34554621 -109231834 + FLAM_C SINE Alu 3 128 -5 1005 200 39 18 chr12 34555022 34555253 -109231202 + L1MB3 LINE L1 5900 6133 -50 1436 172 61 4 chr12 34555253 34555514 -109230941 - AluJb SINE Alu -12 300 25 1971 127 3 59 chr12 34555611 34555935 -109230520 + AluSx SINE Alu 2 307 -5 741 132 9 0 chr12 34556051 34556157 -109230298 + AluJb SINE Alu 24 130 -182 498 193 111 22 chr12 34557644 34557745 -109228710 + MER58B DNA MER1_type 193 310 -2110 2316 140 17 6 chr12 34557745 34558102 -109228353 + MER46B DNA MER2_type 1 236 0 498 193 111 22 chr12 34558102 34558135 -109228320 + MER58B DNA MER1_type 310 339 -2 26 50 0 0 chr12 34558438 34558478 -109227977 + GC_rich Low_complexity Low_complexity 1 40 0 2101 91 42 0 chr12 34560298 34560584 -109225871 - AluSp SINE Alu -15 298 1 2178 121 3 0 chr12 34560774 34561072 -109225383 - AluSx SINE Alu -13 299 1 1257 107 17 0 chr12 34561072 34561250 -109225205 - AluSc SINE Alu -15 294 114 34 42 0 0 chr12 34561569 34561617 -109224838 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr12 34562335 34562370 -109224085 + AT_rich Low_complexity Low_complexity 1 35 0 426 288 8 16 chr12 34562872 34562997 -109223458 + FRAM SINE Alu 3 126 -40 764 142 122 14 chr12 34563877 34564025 -109222430 - AluJb SINE Alu -15 297 134 1292 152 172 12 chr12 34564025 34564281 -109222174 - AluSc SINE Alu -2 297 1 193 114 0 29 chr12 34564572 34564607 -109221848 + L2 LINE L2 3203 3236 -36 471 69 0 0 chr12 34564611 34564669 -109221786 + MER39 LTR ERV1 1 58 -649 189 159 48 0 chr12 34565220 34565283 -109221172 + A-rich Low_complexity Low_complexity 1 66 0 906 281 83 22 chr12 34565509 34565957 -109220498 - L1PBa LINE L1 -6386 477 3 2735 119 22 75 chr12 34565970 34566274 -109220181 - LTR39 LTR ERV1 -304 479 160 1999 115 27 7 chr12 34566274 34566570 -109219885 - AluSx SINE Alu -8 304 3 2735 119 22 75 chr12 34566570 34566658 -109219797 - LTR39 LTR ERV1 -623 160 117 2331 91 3 3 chr12 34566658 34566967 -109219488 - AluSc SINE Alu 0 309 1 2735 119 22 75 chr12 34566967 34567079 -109219376 - LTR39 LTR ERV1 -666 117 1 352 138 17 0 chr12 34567081 34567139 -109219316 - L1MC1 LINE L1 -107 6226 6168 1674 173 0 42 chr12 34569031 34569337 -109217118 + AluJo SINE Alu 1 293 -19 1080 238 126 80 chr12 34569600 34570162 -109216293 - MLT1G LTR MaLR 0 590 3 663 200 7 35 chr12 34570162 34570307 -109216148 - FAM SINE Alu -4 45 1 419 231 37 9 chr12 34570493 34570601 -109215854 - AluSq/x SINE Alu -200 112 2 2031 126 13 0 chr12 34570823 34571124 -109215331 - AluSg SINE Alu -2 308 4 1870 152 14 14 chr12 34571472 34571768 -109214687 - AluJo SINE Alu -16 296 1 1978 166 0 0 chr12 34572331 34572638 -109213817 - AluJo SINE Alu -5 307 1 30 0 0 0 chr12 34574391 34574421 -109212034 + AT_rich Low_complexity Low_complexity 1 30 0 1828 125 17 44 chr12 34574421 34574581 -109211874 - AluSg SINE Alu -12 288 138 1984 98 40 11 chr12 34574581 34574735 -109211720 - AluSc SINE Alu -24 285 118 2513 74 0 3 chr12 34574735 34575045 -109211410 - AluY SINE Alu -2 309 1 1984 98 40 11 chr12 34575045 34575167 -109211288 - AluSc SINE Alu -191 118 1 1828 125 17 44 chr12 34575167 34575302 -109211153 - AluSg SINE Alu -162 138 1 1118 203 0 65 chr12 34575579 34575840 -109210615 + AluJo SINE Alu 35 278 -34 215 30 0 30 chr12 34575843 34575876 -109210579 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 394 255 173 1 chr12 34575877 34576130 -109210325 + L2 LINE L2 2712 3002 -311 265 203 98 98 chr12 34576141 34576284 -109210171 + L2 LINE L2 3149 3291 -22 673 115 0 0 chr12 34577098 34577194 -109209261 + AluY SINE Alu 1 96 -215 257 258 129 106 chr12 34577375 34577559 -109208896 - LTR33 LTR ERVL -152 369 176 2286 71 0 3 chr12 34577559 34577841 -109208614 - AluY SINE Alu -4 307 27 257 258 129 106 chr12 34577841 34577911 -109208544 - LTR33 LTR ERVL -345 176 109 2246 192 38 38 chr12 34577911 34578157 -109208298 + Charlie1b DNA MER1_type 1 246 -2515 868 104 0 22 chr12 34578157 34578292 -109208163 + FLAM_C SINE Alu 2 133 0 2246 192 38 38 chr12 34578292 34578566 -109207889 + Charlie1b DNA MER1_type 245 521 -2 306 238 100 0 chr12 34578568 34578648 -109207807 - LTR33 LTR ERVL -426 95 8 855 230 63 0 chr12 34578829 34579003 -109207452 + AluJb SINE Alu 106 290 -22 911 161 7 0 chr12 34579003 34579158 -109207297 - L1 LINE L1 -3462 2684 2529 * 4370 107 93 11 chr12 34579156 34579641 -109206814 + L1PBa LINE L1 2188 2767 -4095 2123 119 0 7 chr12 34579641 34579944 -109206511 + AluSx SINE Alu 1 301 -11 4370 107 93 11 chr12 34579944 34580271 -109206184 + L1PBa LINE L1 2767 3066 -3796 1133 289 83 16 chr12 34580547 34581104 -109205351 + L2 LINE L2 2113 2706 -608 713 260 39 5 chr12 34581111 34581319 -109205136 + L1ME1 LINE L1 5949 6163 -3 1730 159 7 14 chr12 34581359 34581648 -109204807 + AluSx SINE Alu 1 287 -25 27 0 0 0 chr12 34581649 34581676 -109204779 + AT_rich Low_complexity Low_complexity 1 27 0 1414 118 5 19 chr12 34581822 34582033 -109204422 + AluSg/x SINE Alu 88 295 -17 848 168 0 0 chr12 34582040 34582165 -109204290 + FLAM_C SINE Alu 1 125 -18 2447 77 0 13 chr12 34582189 34582499 -109203956 + AluY SINE Alu 1 306 -5 23 0 0 0 chr12 34583320 34583343 -109203112 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 34583392 34583414 -109203041 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 34583452 34583473 -109202982 + (G)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 34583478 34583503 -109202952 + GC_rich Low_complexity Low_complexity 1 25 0 1760 166 10 10 chr12 34583653 34583943 -109202512 - AluSx SINE Alu -22 290 1 313 217 0 0 chr12 34584214 34584274 -109202181 + MER69 DNA AcHobo 2 61 -2465 335 104 15 15 chr12 34584427 34584494 -109201961 + MER69 DNA AcHobo 2382 2448 -78 2255 104 0 22 chr12 34584496 34584838 -109201617 - AluSx SINE Alu 0 312 2 2587 37 0 0 chr12 34584848 34585143 -109201312 - AluY SINE Alu -16 295 1 1719 143 0 16 chr12 34585606 34585858 -109200597 + AluSx SINE Alu 50 297 -15 1429 210 17 7 chr12 34585936 34586226 -109200229 - AluJb SINE Alu -19 293 1 2293 86 13 3 chr12 34587531 34587832 -109198623 + AluSp SINE Alu 1 304 -9 908 232 46 8 chr12 34588240 34588477 -109197978 + AluJo SINE Alu 2 247 -65 2178 121 0 3 chr12 34588761 34589050 -109197405 + AluSx SINE Alu 1 288 -24 25 75 0 0 chr12 34589217 34589270 -109197185 + GC_rich Low_complexity Low_complexity 1 53 0 2320 79 28 0 chr12 34589925 34590216 -109196239 + AluSx SINE Alu 8 306 -6 25 31 0 0 chr12 34590786 34590818 -109195637 + GC_rich Low_complexity Low_complexity 1 32 0 2305 114 0 50 chr12 34591279 34591717 -109194738 - L1P LINE L1 -1474 4672 4257 993 151 69 0 chr12 34591717 34591876 -109194579 + AluJb SINE Alu 134 303 -9 671 124 16 54 chr12 34594467 34594596 -109191859 + FLAM_C SINE Alu 7 130 -13 2171 116 0 10 chr12 34594689 34594983 -109191472 + AluSg1 SINE Alu 1 291 -18 318 322 0 0 chr12 34596607 34596697 -109189758 + L1MC4 LINE L1 6614 6703 -1339 * 357 281 0 0 chr12 34596617 34596706 -109189749 - L1MC4 LINE L1 -1339 6703 6615 327 49 0 0 chr12 34596709 34596750 -109189705 + (TA)n Simple_repeat Simple_repeat 1 41 0 2371 100 10 3 chr12 34596750 34597059 -109189396 - AluSq SINE Alu -2 311 1 23 54 0 0 chr12 34597292 34597329 -109189126 + AT_rich Low_complexity Low_complexity 1 37 0 385 282 50 33 chr12 34597720 34597857 -109188598 + MIR SINE MIR 6 148 -114 1666 170 109 52 chr12 34597857 34598262 -109188193 - MSTC LTR MaLR 0 428 1 385 282 50 33 chr12 34598262 34598305 -109188150 + MIR SINE MIR 148 189 -73 1104 146 0 0 chr12 34598441 34598628 -109187827 + AluSg/x SINE Alu 126 312 0 1479 117 5 5 chr12 34599866 34600071 -109186384 - AluSx SINE Alu -107 205 1 2264 95 0 3 chr12 34600071 34600365 -109186090 - AluSc SINE Alu -16 293 1 604 98 19 2 chr12 34600394 34600490 -109185965 + LTR17 LTR ERV1 247 360 -354 2081 125 28 0 chr12 34601479 34601766 -109184689 + AluSx SINE Alu 4 298 -14 414 178 28 65 chr12 34602183 34602225 -109184230 - Charlie2 DNA MER1_type -13 2849 2807 1855 176 0 13 chr12 34602225 34602531 -109183924 + AluJb SINE Alu 1 302 -10 414 178 28 65 chr12 34602531 34602595 -109183860 - Charlie2 DNA MER1_type -55 2807 2747 1095 114 0 24 chr12 34602603 34602769 -109183686 + AluSq SINE Alu 1 162 -151 286 154 0 19 chr12 34604016 34604068 -109182387 + Alu SINE Alu 2 52 -247 230 0 33 0 chr12 34604219 34604249 -109182206 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 34604257 34604288 -109182167 + AT_rich Low_complexity Low_complexity 1 31 0 2171 106 20 0 chr12 34604300 34604593 -109181862 + AluSg SINE Alu 1 299 -11 2142 104 0 14 chr12 34604595 34604884 -109181571 + AluSx SINE Alu 1 285 -27 315 0 0 0 chr12 34604884 34604919 -109181536 + (CA)n Simple_repeat Simple_repeat 2 36 0 47 44 0 0 chr12 34605696 34605764 -109180691 + GC_rich Low_complexity Low_complexity 1 68 0 437 288 0 41 chr12 34605998 34606144 -109180311 + AluY SINE Alu 135 274 -27 3449 154 21 7 chr12 34607071 34607686 -109178769 + MER41B LTR ERV1 11 634 -1 655 153 21 90 chr12 34608471 34608547 -109177908 + AluJb SINE Alu 2 65 -247 2492 80 0 6 chr12 34608547 34608859 -109177596 - AluSq SINE Alu -3 310 1 655 153 21 90 chr12 34608859 34608926 -109177529 + AluJb SINE Alu 65 135 -177 231 267 107 0 chr12 34608945 34609020 -109177435 + MIR SINE MIR 180 262 0 316 266 65 57 chr12 34609220 34609344 -109177111 + L2 LINE L2 3145 3269 -3 2278 100 3 0 chr12 34609393 34609684 -109176771 - AluSx SINE Alu -20 292 1 404 267 71 53 chr12 34610377 34610602 -109175853 + MIR SINE MIR 32 260 -2 358 333 23 38 chr12 34612173 34612305 -109174150 + L2 LINE L2 3137 3266 -6 370 274 58 16 chr12 34612900 34613073 -109173382 + MIR SINE MIR 81 261 -1 25 40 0 20 chr12 34613127 34613150 -109173305 + AT_rich Low_complexity Low_complexity 1 23 -26 1962 157 0 10 chr12 34613150 34613456 -109172999 + AluJo SINE Alu 1 303 -9 25 40 0 20 chr12 34613456 34613482 -109172973 + AT_rich Low_complexity Low_complexity 23 49 0 288 232 116 36 chr12 34613810 34613948 -109172507 - L1ME4a LINE L1 -6 6115 5967 460 217 42 0 chr12 34613976 34614096 -109172359 - L1ME4a LINE L1 -211 5910 5786 610 170 0 0 chr12 34614418 34614518 -109171937 - AluJb SINE Alu -6 306 207 2356 36 0 4 chr12 34615683 34615963 -109170492 + AluY SINE Alu 1 279 -32 189 0 0 0 chr12 34615963 34615984 -109170471 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1256 102 6 0 chr12 34615984 34616150 -109170305 + AluSc SINE Alu 131 297 -12 956 152 36 85 chr12 34616493 34616552 -109169903 + MER20 DNA MER1_type 7 67 -152 396 0 0 0 chr12 34616552 34616596 -109169859 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2111 113 0 0 chr12 34616599 34616881 -109169574 - AluSx SINE Alu -30 282 1 956 152 36 85 chr12 34616881 34617041 -109169414 + MER20 DNA MER1_type 69 219 0 360 276 80 25 chr12 34617232 34617395 -109169060 + MIR SINE MIR 86 257 -5 268 243 14 0 chr12 34617395 34617465 -109168990 + L1ME4a LINE L1 5954 6024 -97 2267 109 0 7 chr12 34617899 34618201 -109168254 - AluSx SINE Alu -12 300 1 711 280 43 27 chr12 34618266 34618453 -109168002 + MIR SINE MIR 1 195 -67 231 36 0 0 chr12 34618453 34618481 -109167974 + (TG)n Simple_repeat Simple_repeat 2 29 0 711 280 43 27 chr12 34618481 34618550 -109167905 + MIR SINE MIR 195 261 -1 2096 100 28 3 chr12 34619131 34619422 -109167033 + AluSq SINE Alu 1 298 -15 967 90 0 8 chr12 34619885 34620019 -109166436 - FLAM_C SINE Alu 0 133 1 887 93 0 47 chr12 34620207 34620336 -109166119 - FLAM_C SINE Alu -10 123 1 265 181 0 111 chr12 34621139 34621183 -109165272 - MIR3 SINE MIR -12 196 161 668 166 251 0 chr12 34621183 34621358 -109165097 + MER20 DNA MER1_type 1 219 0 265 181 0 111 chr12 34621358 34621385 -109165070 - MIR3 SINE MIR -47 161 133 351 277 161 28 chr12 34621573 34621822 -109164633 + MLT1I LTR MaLR 66 347 -62 23 33 0 0 chr12 34622059 34622089 -109164366 + AT_rich Low_complexity Low_complexity 1 30 0 2087 135 0 0 chr12 34622092 34622380 -109164075 + AluSx SINE Alu 1 288 -24 306 0 0 0 chr12 34622381 34622415 -109164040 + (CA)n Simple_repeat Simple_repeat 2 35 0 415 261 99 0 chr12 34623149 34623260 -109163195 - L2 LINE L2 -1 3312 3191 2062 95 13 16 chr12 34623470 34623774 -109162681 - AluSx SINE Alu -9 303 1 1072 168 0 0 chr12 34624780 34624947 -109161508 + FRAM SINE Alu 1 166 -10 240 296 74 25 chr12 34625543 34625624 -109160831 + L2 LINE L2 3136 3220 -52 2122 126 0 3 chr12 34625741 34626042 -109160413 - AluSx SINE Alu -12 300 1 2617 217 27 22 chr12 34626115 34626784 -109159671 - L1MB7 LINE L1 0 6184 5513 2286 185 29 32 chr12 34626838 34627394 -109159061 - L1ME2 LINE L1 -9 6155 5602 2221 111 0 0 chr12 34627457 34627754 -109158701 + AluSx SINE Alu 1 297 -15 310 157 20 0 chr12 34628134 34628236 -109158219 + (TA)n Simple_repeat Simple_repeat 1 104 0 2142 130 7 0 chr12 34630133 34630433 -109156022 + AluSq SINE Alu 1 302 -11 500 249 109 36 chr12 34631259 34631452 -109155003 - HAL1 LINE L1 -2299 208 2 2191 102 0 0 chr12 34631562 34631857 -109154598 + AluSx SINE Alu 1 295 -17 2266 128 0 0 chr12 34632695 34633007 -109153448 - AluSx SINE Alu 0 312 1 1738 163 12 38 chr12 34633304 34633624 -109152831 - AluJo SINE Alu 0 312 1 2259 83 30 7 chr12 34633689 34633989 -109152466 - AluSg SINE Alu -3 307 1 282 123 0 70 chr12 34634028 34634085 -109152370 + LTR32 LTR ERVL 15 67 -404 2166 163 68 5 chr12 34634086 34634510 -109151945 + LTR32 LTR ERVL 15 465 -6 2398 69 3 0 chr12 34634719 34635009 -109151446 - AluSg SINE Alu -19 291 1 913 291 51 10 chr12 34635764 34636060 -109150395 - MLT1I LTR MaLR -2 407 100 319 325 30 6 chr12 34636256 34636425 -109150030 + MLT1J2 LTR MaLR 2 174 -276 442 133 60 0 chr12 34636753 34636836 -109149619 + MER3 DNA MER1_type 115 202 -7 228 105 53 0 chr12 34636804 34636842 -109149613 - MER3 DNA MER1_type -123 86 47 * 557 322 0 23 chr12 34637326 34637503 -109148952 + MIR3 SINE MIR 3 175 -33 267 178 4 110 chr12 34637557 34637664 -109148791 + MER110A LTR ERV1 80 159 -309 2401 91 0 0 chr12 34637816 34638123 -109148332 + AluSg SINE Alu 1 307 -3 710 192 96 6 chr12 34638130 34638297 -109148158 + L1PA16 LINE L1 5963 6144 -22 286 132 0 0 chr12 34638302 34638355 -109148100 - Alu SINE Alu -2 300 248 2245 102 3 0 chr12 34638369 34638662 -109147793 - AluSx SINE Alu -18 294 1 1572 98 0 14 chr12 34639158 34639372 -109147083 - AluSg/x SINE Alu -18 294 84 29 28 0 0 chr12 34639477 34639513 -109146942 + AT_rich Low_complexity Low_complexity 1 36 0 207 271 0 0 chr12 34639798 34639846 -109146609 + CT-rich Low_complexity Low_complexity 6 53 0 3936 237 52 24 chr12 34639987 34640124 -109146331 + L1M4c LINE L1 1974 2106 -4276 2382 87 0 0 chr12 34640124 34640423 -109146032 - AluSx SINE Alu -12 300 2 3936 237 52 24 chr12 34640423 34641803 -109144652 + L1M4c LINE L1 2106 3543 -2839 1140 113 41 10 chr12 34641803 34641997 -109144458 + Tigger1 DNA MER2_type 1 200 -2218 351 78 116 0 chr12 34641997 34642126 -109144329 + (TA)n Simple_repeat Simple_repeat 2 145 0 3786 139 40 53 chr12 34642131 34642575 -109143880 + Tigger1 DNA MER2_type 190 621 -1797 2206 102 7 16 chr12 34642575 34642880 -109143575 + AluSc SINE Alu 1 302 -7 3786 139 40 53 chr12 34642880 34643210 -109143245 + Tigger1 DNA MER2_type 621 954 -1464 * 4566 124 28 7 chr12 34643207 34643954 -109142501 + Tigger1 DNA MER2_type 1656 2418 0 9166 159 26 58 chr12 34643955 34645025 -109141430 + L1MA9 LINE L1 3543 4645 -1903 2197 88 3 3 chr12 34645025 34645351 -109141104 + AluSp SINE Alu 1 326 0 9166 159 26 58 chr12 34645351 34645417 -109141038 + L1MA9 LINE L1 4645 4712 -1836 670 145 68 0 chr12 34645417 34645534 -109140921 + FRAM SINE Alu 41 165 -11 9166 159 26 58 chr12 34645534 34647353 -109139102 + L1MA9 LINE L1 4712 6534 -14 2128 117 41 0 chr12 34647443 34647734 -109138721 - AluSx SINE Alu -9 303 1 2335 91 3 0 chr12 34648350 34648647 -109137808 + AluSp SINE Alu 2 299 -14 216 111 0 0 chr12 34648743 34648779 -109137676 + (TA)n Simple_repeat Simple_repeat 2 37 0 539 208 119 86 chr12 34649634 34649844 -109136611 - MLT1J LTR MaLR -3 508 286 5458 46 6 1 chr12 34649844 34650501 -109135954 - PABL_A LTR ERV1 0 660 1 539 208 119 86 chr12 34650501 34650559 -109135896 - MLT1J LTR MaLR -225 286 231 1994 160 0 0 chr12 34653024 34653336 -109133119 - AluJb SINE Alu 0 312 1 461 278 66 31 chr12 34653537 34653857 -109132598 + L1ME LINE L1 4909 5239 -907 1850 148 129 38 chr12 34653857 34654276 -109132179 + LTR32 LTR ERVL 15 471 0 609 268 31 38 chr12 34654442 34654492 -109131963 + L1ME LINE L1 5318 5367 -797 1992 149 10 3 chr12 34654492 34654793 -109131662 + AluJb SINE Alu 1 303 -9 609 268 31 38 chr12 34654793 34655003 -109131452 + L1ME LINE L1 5367 5576 -588 490 266 21 75 chr12 34655067 34655151 -109131304 + MER5B DNA MER1_type 1 88 -90 2358 201 56 30 chr12 34655151 34655718 -109130737 + MER119 DNA MER1_type 1 582 -1 490 266 21 75 chr12 34655718 34655821 -109130634 + MER5B DNA MER1_type 88 178 0 301 243 97 97 chr12 34655853 34656079 -109130376 + MER5C DNA MER1_type 2 227 -97 412 206 50 50 chr12 34656085 34656150 -109130305 - L1MA10 LINE L1 -9 6325 6261 1713 191 40 82 chr12 34656150 34656673 -109129782 - L1ME1 LINE L1 -65 6101 5601 247 252 47 47 chr12 34656677 34656749 -109129706 + MER5C DNA MER1_type 217 291 -33 2270 117 0 0 chr12 34656749 34657056 -109129399 + AluSx SINE Alu 1 307 -5 247 252 47 47 chr12 34657056 34657090 -109129365 + MER5C DNA MER1_type 290 323 -1 400 273 15 0 chr12 34657102 34657234 -109129221 + L1ME LINE L1 5685 5818 -344 370 251 111 85 chr12 34658453 34658652 -109127803 - MIR SINE MIR -11 251 48 870 211 119 18 chr12 34658708 34658935 -109127520 - MIR SINE MIR 0 262 13 1915 117 52 36 chr12 34659238 34659546 -109126909 - AluSq SINE Alu 0 313 1 217 224 179 0 chr12 34660163 34660230 -109126225 + L2 LINE L2 2988 3066 -247 687 201 134 0 chr12 34660271 34660450 -109126005 - MER3 DNA MER1_type -5 204 2 464 242 61 61 chr12 34660483 34660648 -109125807 + L2 LINE L2 3148 3312 -1 237 108 0 0 chr12 34662633 34662670 -109123785 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 0 0 0 chr12 34662847 34662867 -109123588 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2040 125 7 0 chr12 34662867 34663148 -109123307 - AluSx SINE Alu -29 283 1 7079 186 63 65 chr12 34663366 34663809 -109122646 - L1MC4a LINE L1 -13 7795 7353 2080 133 0 9 chr12 34663809 34664124 -109122331 - AluSx SINE Alu 0 312 1 7079 186 63 65 chr12 34664124 34665372 -109121083 - L1MC4a LINE L1 -455 7353 6105 2080 135 3 0 chr12 34665372 34665668 -109120787 + AluSx SINE Alu 1 297 -15 7079 186 63 65 chr12 34665668 34665834 -109120621 - L1MC4a LINE L1 -1703 6105 5940 2472 55 0 23 chr12 34666094 34666403 -109120052 + AluY SINE Alu 2 303 -8 21 0 0 0 chr12 34666471 34666492 -109119963 + AT_rich Low_complexity Low_complexity 1 21 0 377 197 13 26 chr12 34668150 34668226 -109118229 - AluJ/FRAM SINE Alu -8 294 220 935 211 17 0 chr12 34668737 34668917 -109117538 - MER5A DNA MER1_type -5 184 2 35 0 0 22 chr12 34670248 34670265 -109116190 + AT_rich Low_complexity Low_complexity 1 17 -28 8155 25 1 0 chr12 34670265 34671679 -109114776 + L1PA3 LINE L1 4737 6152 -3 35 0 0 22 chr12 34671679 34671707 -109114748 + AT_rich Low_complexity Low_complexity 17 45 0 281 24 49 0 chr12 34671774 34671815 -109114640 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2026 106 11 7 chr12 34671827 34672133 -109114322 + AluSg1 SINE Alu 1 307 0 772 260 63 27 chr12 34672734 34672985 -109113470 - MIR SINE MIR -3 259 2 912 199 74 98 chr12 34673066 34673392 -109113063 + MLT1A1 LTR MaLR 1 318 -47 3673 121 112 26 chr12 34673404 34673663 -109112792 - Tigger1 DNA MER2_type -1410 1008 773 2140 126 3 0 chr12 34673663 34673965 -109112490 + AluSx SINE Alu 3 305 -7 3673 121 112 26 chr12 34673965 34674473 -109111982 - Tigger1 DNA MER2_type -1645 773 125 328 232 21 32 chr12 34674761 34674856 -109111599 - MIR SINE MIR -1 261 168 2047 130 35 0 chr12 34675133 34675417 -109111038 - AluSx SINE Alu -18 294 1 3221 211 51 47 chr12 34675417 34676034 -109110421 - L1ME1 LINE L1 -56 6110 5497 2319 96 10 13 chr12 34676034 34676347 -109110108 - AluSq SINE Alu -1 312 1 3221 211 51 47 chr12 34676347 34676548 -109109907 - L1ME1 LINE L1 -669 5497 5292 2302 113 3 0 chr12 34676548 34676859 -109109596 - AluSx SINE Alu 0 312 1 3221 211 51 47 chr12 34676859 34676894 -109109561 - L1ME1 LINE L1 -874 5292 5259 1076 168 53 18 chr12 34678619 34678845 -109107610 - L1ME1 LINE L1 -1153 4993 4760 4604 252 80 25 chr12 34678846 34679391 -109107064 - L2 LINE L2 -477 2837 2324 2167 124 0 3 chr12 34679391 34679697 -109106758 + AluSx SINE Alu 1 305 -7 4604 252 80 25 chr12 34679697 34680609 -109105846 - L2 LINE L2 -990 2324 1299 853 226 0 0 chr12 34680677 34680823 -109105632 + FRAM SINE Alu 1 146 -30 468 77 0 0 chr12 34680823 34680888 -109105567 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 1063 239 70 78 chr12 34680904 34681277 -109105178 - L2 LINE L2 -2606 708 339 1459 167 130 0 chr12 34681624 34681870 -109104585 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr12 34681983 34682025 -109104430 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8110 24 2 6 chr12 34682025 34683297 -109103158 - L1PA3 LINE L1 -13 6142 4871 1801 141 0 0 chr12 34683502 34683764 -109102691 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 34683928 34683992 -109102463 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 7 0 chr12 34684739 34685049 -109101406 + AluSp SINE Alu 1 312 -1 1852 164 0 34 chr12 34685085 34685408 -109101047 - AluJo SINE Alu 0 312 1 246 224 143 31 chr12 34685842 34685926 -109100529 - MER106A DNA MER1_type -3 233 139 10549 116 25 44 chr12 34685926 34686113 -109100342 + Tigger1 DNA MER2_type 1 190 -2228 2349 88 10 7 chr12 34686113 34686419 -109100036 - AluSg SINE Alu -3 307 1 10549 116 25 44 chr12 34686419 34686534 -109099921 + Tigger1 DNA MER2_type 190 306 -2112 2159 116 0 7 chr12 34686534 34686819 -109099636 + AluSg SINE Alu 1 283 -27 10549 116 25 44 chr12 34686819 34687291 -109099164 + Tigger1 DNA MER2_type 306 785 -1633 2312 81 13 19 chr12 34687291 34687601 -109098854 - AluY SINE Alu -3 308 1 10549 116 25 44 chr12 34687601 34688546 -109097909 + Tigger1 DNA MER2_type 785 1690 -728 616 158 79 18 chr12 34688549 34688663 -109097792 + FLAM_C SINE Alu 2 122 -21 2645 131 17 7 chr12 34688672 34689084 -109097371 + Tigger1 DNA MER2_type 1673 2088 -330 2485 70 7 3 chr12 34689084 34689386 -109097069 + AluSq SINE Alu 1 303 -10 2396 81 3 3 chr12 34689386 34689695 -109096760 + AluY SINE Alu 1 309 -2 539 288 81 41 chr12 34690113 34690384 -109096071 - L2 LINE L2 0 3313 3032 * 721 182 86 27 chr12 34690376 34690563 -109095892 - L2 LINE L2 -408 2906 2709 2282 84 3 3 chr12 34690771 34691070 -109095385 + AluSx SINE Alu 1 299 -13 214 288 17 0 chr12 34691361 34691420 -109095035 - L2 LINE L2 0 3272 3213 471 274 149 19 chr12 34691514 34691722 -109094733 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 34691735 34691765 -109094690 + (TAA)n Simple_repeat Simple_repeat 2 32 0 303 343 50 0 chr12 34691785 34691925 -109094530 - L2 LINE L2 -189 3083 2937 3349 96 96 2 chr12 34693181 34693638 -109092817 + MER61D LTR ERV1 1 500 -1 1522 260 131 35 chr12 34693756 34694199 -109092256 + L2 LINE L2 1575 1974 -1340 2296 88 7 0 chr12 34694199 34694507 -109091948 - AluSx SINE Alu 0 312 1 2011 105 10 49 chr12 34694507 34694813 -109091642 - AluSx SINE Alu -18 294 1 1522 260 131 35 chr12 34694813 34695057 -109091398 + L2 LINE L2 1973 2329 -985 1572 166 76 0 chr12 34695057 34695334 -109091121 - AluJo SINE Alu -14 298 1 302 241 18 71 chr12 34695339 34695451 -109091004 - MLT1J LTR MaLR -78 433 328 530 307 74 5 chr12 34695511 34695726 -109090729 - MLT1J LTR MaLR -276 235 6 1734 169 6 32 chr12 34695885 34696199 -109090256 + AluJb SINE Alu 1 306 -6 518 271 42 30 chr12 34696774 34696940 -109089515 + Charlie8 DNA MER1_type 1 168 -2249 2321 68 0 0 chr12 34696941 34697220 -109089235 + AluY SINE Alu 1 279 -32 189 0 0 0 chr12 34697220 34697241 -109089214 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1252 102 6 0 chr12 34697241 34697407 -109089048 + AluSc SINE Alu 131 297 -12 1067 154 36 72 chr12 34697753 34697812 -109088643 + MER20 DNA MER1_type 7 67 -152 2126 115 0 0 chr12 34697812 34698142 -109088313 - AluSx SINE Alu 0 330 1 1067 154 36 72 chr12 34698142 34698302 -109088153 + MER20 DNA MER1_type 67 219 0 355 276 80 25 chr12 34698493 34698656 -109087799 + MIR SINE MIR 86 257 -5 298 247 14 0 chr12 34698656 34698729 -109087726 + L1ME4a LINE L1 5954 6027 -94 2263 109 0 7 chr12 34699160 34699462 -109086993 - AluSx SINE Alu -12 300 1 693 280 43 27 chr12 34699527 34699714 -109086741 + MIR SINE MIR 1 195 -67 270 0 0 0 chr12 34699714 34699744 -109086711 + (TG)n Simple_repeat Simple_repeat 2 31 0 693 280 43 27 chr12 34699744 34699813 -109086642 + MIR SINE MIR 195 261 -1 2113 97 31 3 chr12 34700394 34700684 -109085771 + AluSq SINE Alu 1 298 -15 1026 90 0 8 chr12 34701147 34701281 -109085174 - FLAM_C SINE Alu 0 133 1 938 93 0 47 chr12 34701469 34701598 -109084857 - FLAM_C SINE Alu -10 123 1 257 181 0 111 chr12 34702401 34702445 -109084010 - MIR3 SINE MIR -12 196 161 743 166 251 0 chr12 34702445 34702620 -109083835 + MER20 DNA MER1_type 1 219 0 257 181 0 111 chr12 34702620 34702647 -109083808 - MIR3 SINE MIR -47 161 133 443 277 161 28 chr12 34702835 34703084 -109083371 + MLT1I LTR MaLR 66 347 -62 23 33 0 0 chr12 34703321 34703351 -109083104 + AT_rich Low_complexity Low_complexity 1 30 0 2082 135 0 0 chr12 34703354 34703642 -109082813 + AluSx SINE Alu 1 288 -24 450 0 0 0 chr12 34703643 34703693 -109082762 + (CA)n Simple_repeat Simple_repeat 2 51 0 414 261 99 0 chr12 34704427 34704538 -109081917 - L2 LINE L2 -1 3312 3191 2074 92 13 16 chr12 34704748 34705052 -109081403 - AluSx SINE Alu -9 303 1 1064 168 0 0 chr12 34706058 34706225 -109080230 + FRAM SINE Alu 1 166 -10 4422 253 83 25 chr12 34706799 34707322 -109079133 - L2 LINE L2 -497 2817 2326 2167 124 0 3 chr12 34707322 34707628 -109078827 + AluSx SINE Alu 1 305 -7 4422 253 83 25 chr12 34707628 34708540 -109077915 - L2 LINE L2 -988 2326 1299 814 219 0 0 chr12 34708608 34708754 -109077701 + FRAM SINE Alu 1 146 -30 501 62 0 0 chr12 34708754 34708819 -109077636 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 1063 239 70 78 chr12 34708835 34709208 -109077247 - L2 LINE L2 -2606 708 339 1459 167 130 0 chr12 34709555 34709801 -109076654 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr12 34709914 34709956 -109076499 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 9531 32 4 0 chr12 34709956 34711792 -109074663 - L1PA3 LINE L1 -13 6142 4301 2352 83 3 0 chr12 34711805 34712095 -109074360 + AluSp SINE Alu 2 292 -21 2257 226 125 22 chr12 34712096 34712783 -109073672 - L1 LINE L1 -1722 4424 3667 2127 134 16 0 chr12 34712800 34713106 -109073349 - AluSx SINE Alu -1 311 1 1851 144 35 3 chr12 34713106 34713286 -109073169 - AluJb SINE Alu -2 310 116 246 32 0 0 chr12 34713286 34713317 -109073138 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1851 144 35 3 chr12 34713317 34713420 -109073035 - AluJb SINE Alu -196 116 18 1471 212 67 67 chr12 34714634 34715130 -109071325 + MLT1D LTR MaLR 8 503 -2 600 192 0 25 chr12 34715130 34715247 -109071208 + MER106B DNA MER1_type 25 138 -921 1156 128 48 0 chr12 34715247 34715435 -109071020 - Tigger1 DNA MER2_type 0 2418 2222 2113 123 3 23 chr12 34715440 34715740 -109070715 + AluSp SINE Alu 1 294 -19 342 290 122 0 chr12 34716097 34716228 -109070227 - MER5A DNA MER1_type -30 159 13 2300 107 7 7 chr12 34716591 34716901 -109069554 - AluSq SINE Alu -3 310 1 693 67 34 0 chr12 34717187 34717276 -109069179 - AluSq/x SINE Alu -189 123 32 360 178 55 0 chr12 34717276 34717349 -109069106 - L1 LINE L1 -2471 3675 3599 633 205 0 0 chr12 34717657 34717774 -109068681 + FLAM_C SINE Alu 2 118 -25 2452 87 3 0 chr12 34717792 34718101 -109068354 + AluSx SINE Alu 1 310 -2 2303 106 0 0 chr12 34718476 34718778 -109067677 + AluSx SINE Alu 1 302 -10 2365 90 0 0 chr12 34719149 34719463 -109066992 + AluSx SINE Alu 1 314 0 243 158 26 13 chr12 34719613 34719689 -109066766 + (TA)n Simple_repeat Simple_repeat 1 77 0 1784 148 105 0 chr12 34719760 34720065 -109066390 - MER1B DNA MER1_type 0 337 1 247 311 169 11 chr12 34720823 34721000 -109065455 - MIR SINE MIR -57 205 1 3017 158 55 43 chr12 34721177 34721481 -109064974 - Tigger6 DNA MER2_type 0 1597 1298 2224 70 9 86 chr12 34721481 34721808 -109064647 + AluSg SINE Alu 1 302 -8 3017 158 55 43 chr12 34721808 34721999 -109064456 - Tigger6 DNA MER2_type -299 1298 1090 2306 92 0 31 chr12 34721999 34722316 -109064139 - AluSg SINE Alu -3 307 1 3017 158 55 43 chr12 34722316 34722453 -109064002 - Tigger6 DNA MER2_type -507 1090 956 458 205 98 9 chr12 34722464 34722576 -109063879 - FLAM_A SINE Alu -10 123 2 248 291 19 39 chr12 34722690 34722793 -109063662 - L3 LINE CR1 -103 1474 1374 803 200 6 34 chr12 34722797 34722972 -109063483 + FRAM SINE Alu 1 167 -9 264 197 0 16 chr12 34723631 34723692 -109062763 + LTR48B LTR ERV1 13 72 -572 2023 138 3 0 chr12 34723888 34724184 -109062271 + AluSx SINE Alu 3 299 -13 408 284 46 0 chr12 34724195 34724337 -109062118 - MIR SINE MIR -63 145 20 1954 178 12 35 chr12 34724354 34724753 -109061702 + MLT1B LTR MaLR 1 390 0 1035 89 0 15 chr12 34724974 34725109 -109061346 + AluSq/x SINE Alu 1 133 -179 1802 108 4 4 chr12 34725212 34725462 -109060993 - AluSq SINE Alu -63 250 1 1554 145 0 125 chr12 34725654 34725804 -109060651 + AluJb SINE Alu 1 85 -217 2066 81 0 0 chr12 34725804 34726052 -109060403 - AluSg SINE Alu -62 248 1 1554 145 0 125 chr12 34726052 34726246 -109060209 + AluJb SINE Alu 85 302 0 598 135 42 0 chr12 34726529 34726625 -109059830 + HY3 scRNA scRNA 1 100 -1 189 0 0 0 chr12 34726625 34726646 -109059809 + (A)n Simple_repeat Simple_repeat 1 21 0 600 262 0 0 chr12 34726647 34726788 -109059667 + FLAM_C SINE Alu 3 143 0 511 216 48 37 chr12 34726858 34727207 -109059248 + L1ME4a LINE L1 5709 6120 -1 2586 71 0 0 chr12 34727958 34728269 -109058186 - AluY SINE Alu 0 311 1 2063 115 28 3 chr12 34728271 34728558 -109057897 - AluSx SINE Alu -18 294 1 2347 94 0 19 chr12 34728861 34729169 -109057286 - AluSq SINE Alu -9 304 3 826 156 0 15 chr12 34729183 34729318 -109057137 - FLAM_C SINE Alu 0 133 1 1402 164 0 38 chr12 34729486 34729724 -109056731 - AluJo SINE Alu -83 229 1 239 224 143 31 chr12 34730158 34730242 -109056213 - MER106A DNA MER1_type -3 233 139 948 170 11 48 chr12 34730242 34730430 -109056025 + Tigger1 DNA MER2_type 1 181 -2237 2367 86 0 19 chr12 34730430 34730744 -109055711 - AluY SINE Alu -3 308 1 8499 115 30 34 chr12 34730745 34731691 -109054764 + Tigger1 DNA MER2_type 727 1667 -751 553 165 78 17 chr12 34731691 34731806 -109054649 + FLAM_C SINE Alu 1 122 -11 8499 115 30 34 chr12 34731806 34732227 -109054228 + Tigger1 DNA MER2_type 1667 2088 -330 2467 70 7 3 chr12 34732227 34732525 -109053930 + AluSq SINE Alu 1 299 -14 1461 194 20 0 chr12 34733136 34733259 -109053196 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr12 34733259 34733287 -109053168 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1461 194 20 0 chr12 34733287 34733457 -109052998 + AluJo SINE Alu 120 300 -12 2015 123 3 0 chr12 34733523 34733808 -109052647 + AluJo SINE Alu 1 286 -26 225 0 0 0 chr12 34734417 34734442 -109052013 + (CGG)n Simple_repeat Simple_repeat 2 26 0 2265 97 0 3 chr12 34736286 34736576 -109049879 - AluSx SINE Alu -23 289 1 1252 107 11 0 chr12 34736739 34736917 -109049538 - AluSq SINE Alu -8 305 126 1901 38 0 0 chr12 34736919 34737131 -109049324 - AluY SINE Alu -13 298 87 243 0 0 0 chr12 34737133 34737160 -109049295 + (T)n Simple_repeat Simple_repeat 1 27 0 722 138 9 2 chr12 34737180 34737422 -109049033 + AluJ SINE Alu 6 291 -21 210 143 0 0 chr12 34737422 34737457 -109048998 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 839 175 0 45 chr12 34737463 34737617 -109048838 - FAM SINE Alu -27 158 12 195 146 42 0 chr12 34737910 34737958 -109048497 - L3 LINE CR1 -191 1386 1337 246 273 117 16 chr12 34738336 34738464 -109047991 + MIR SINE MIR 13 153 -109 579 227 0 0 chr12 34738474 34738584 -109047871 + FAM SINE Alu 13 122 -63 1644 152 3 20 chr12 34738712 34739009 -109047446 + AluSx SINE Alu 5 296 -16 906 234 47 16 chr12 34739018 34739389 -109047066 - LTR29 LTR ERV1 -79 565 137 1321 174 32 108 chr12 34739516 34739624 -109046831 + AluJb SINE Alu 1 116 -196 1812 109 101 4 chr12 34739624 34739900 -109046555 - AluSc SINE Alu -6 303 1 1321 174 32 108 chr12 34739900 34740107 -109046348 + AluJb SINE Alu 116 292 -20 1190 58 19 0 chr12 34740152 34740308 -109046147 + L1PA7 LINE L1 5994 6152 -2 991 156 19 0 chr12 34740699 34740853 -109045602 + MER4D LTR ERV1 747 903 0 813 121 60 27 chr12 34740853 34740992 -109045463 - LTR48B LTR ERV1 -436 208 62 2299 110 3 0 chr12 34740992 34741291 -109045164 - AluSx SINE Alu -12 300 1 11487 156 169 33 chr12 34741302 34741323 -109045132 - L1 LINE L1 -2931 4634 4617 2863 107 49 5 chr12 34741323 34741772 -109044683 - L1MA2 LINE L1 -5 6299 5831 11487 156 169 33 chr12 34741772 34742434 -109044021 - L1 LINE L1 -2948 4617 4046 2268 93 7 0 chr12 34742434 34742736 -109043719 - AluY SINE Alu -7 304 1 11487 156 169 33 chr12 34742736 34743047 -109043408 - L1 LINE L1 -3519 4046 3779 1633 171 4 19 chr12 34743047 34743316 -109043139 - AluJo SINE Alu -47 265 1 11487 156 169 33 chr12 34743316 34743901 -109042554 - L1 LINE L1 -3786 3779 3275 2367 107 3 0 chr12 34743901 34744210 -109042245 - AluSg SINE Alu 0 310 1 11487 156 169 33 chr12 34744210 34744474 -109041981 - L1 LINE L1 -4290 3275 3048 1556 150 0 0 chr12 34744474 34744701 -109041754 - AluSg/x SINE Alu -12 300 74 11487 156 169 33 chr12 34744701 34744968 -109041487 - L1 LINE L1 -4517 3048 2819 2661 50 0 0 chr12 34744968 34745270 -109041185 - AluY SINE Alu -9 302 1 11487 156 169 33 chr12 34745270 34746432 -109040023 - L1 LINE L1 -4746 2819 885 666 191 85 0 chr12 34746415 34746556 -109039899 - L1 LINE L1 -7193 372 220 * 3203 190 17 34 chr12 34746534 34747181 -109039274 - L1M1 LINE L1 -6910 655 20 422 155 14 0 chr12 34747181 34747252 -109039203 - LTR48B LTR ERV1 -572 72 1 853 183 6 34 chr12 34747900 34748075 -109038380 - FRAM SINE Alu -9 167 1 270 242 61 30 chr12 34748079 34748178 -109038277 + L3 LINE CR1 1374 1475 -102 366 67 0 0 chr12 34748873 34748918 -109037537 + Alu SINE Alu 1 45 -257 597 284 94 0 chr12 34749177 34749385 -109037070 - MIR SINE MIR -13 249 18 365 183 24 37 chr12 34749537 34749661 -109036794 - MER41A LTR ERV1 -12 516 387 2004 84 4 8 chr12 34749661 34749922 -109036533 + AluY SINE Alu 1 260 -51 2113 119 0 22 chr12 34750204 34750515 -109035940 + AluSx SINE Alu 1 304 -8 2023 138 0 3 chr12 34750516 34750812 -109035643 + AluSx SINE Alu 1 295 -17 704 168 0 73 chr12 34750983 34751096 -109035359 + FLAM_A SINE Alu 1 104 -198 2258 89 3 13 chr12 34751096 34751398 -109035057 - AluSc SINE Alu -10 299 1 704 168 0 73 chr12 34751398 34751421 -109035034 + FLAM_A SINE Alu 104 127 -175 192 77 0 0 chr12 34751421 34751447 -109035008 + (TA)n Simple_repeat Simple_repeat 2 27 0 1561 191 42 3 chr12 34751530 34751818 -109034637 - AluJo SINE Alu -13 299 1 794 233 34 48 chr12 34752069 34752361 -109034094 + pTR5 LTR ERV1 741 1028 -1410 3004 130 242 0 chr12 34752444 34752998 -109033457 + LTR12 LTR ERV1 1 688 0 1259 146 194 8 chr12 34753032 34753285 -109033170 - AluSx SINE Alu -12 300 1 2075 91 17 3 chr12 34753385 34753672 -109032783 - AluY SINE Alu -19 292 2 217 311 54 0 chr12 34753673 34753747 -109032708 - L2 LINE L2 -8 3305 3228 189 0 0 0 chr12 34753858 34753879 -109032576 + (A)n Simple_repeat Simple_repeat 1 21 0 2373 88 7 0 chr12 34753890 34754198 -109032257 + AluSp SINE Alu 1 310 -3 2433 67 14 0 chr12 34754573 34754870 -109031585 + AluSp SINE Alu 1 301 -12 2556 68 0 0 chr12 34754899 34755209 -109031246 + AluY SINE Alu 1 310 -1 26 30 0 0 chr12 34755390 34755423 -109031032 + AT_rich Low_complexity Low_complexity 1 33 0 273 274 131 40 chr12 34755541 34755716 -109030739 + MIR SINE MIR 33 223 -39 454 290 36 79 chr12 34755900 34756203 -109030252 + L1MEd LINE L1 31 320 -5799 2214 101 0 0 chr12 34756237 34756524 -109029931 + AluSc SINE Alu 1 287 -22 213 121 0 0 chr12 34756649 34756682 -109029773 + (A)n Simple_repeat Simple_repeat 1 33 0 2266 117 3 0 chr12 34756991 34757298 -109029157 - AluSx SINE Alu 0 312 5 2062 110 7 27 chr12 34757342 34757643 -109028812 - AluY SINE Alu -16 295 1 2748 101 53 22 chr12 34758696 34759111 -109027344 - MSTC LTR MaLR 0 428 1 2402 66 24 0 chr12 34759334 34759623 -109026832 + AluY SINE Alu 1 296 -15 659 316 173 47 chr12 34759834 34760704 -109025751 + L3 LINE CR1 195 1193 -384 2009 158 10 0 chr12 34760704 34761007 -109025448 + AluSx SINE Alu 1 306 -6 659 316 173 47 chr12 34761007 34761074 -109025381 + L3 LINE CR1 1193 1250 -327 2456 86 0 0 chr12 34761508 34761809 -109024646 + AluSq SINE Alu 1 301 -12 317 280 23 0 chr12 34762098 34762210 -109024245 + MIR SINE MIR 5 121 -87 472 221 71 0 chr12 34762367 34762480 -109023975 + FLAM_A SINE Alu 12 132 -10 546 219 50 8 chr12 34762702 34762821 -109023634 + FLAM_A SINE Alu 1 124 -9 195 314 29 14 chr12 34763008 34763078 -109023377 + L2 LINE L2 2999 3069 -203 204 246 33 0 chr12 34763080 34763141 -109023314 + (TTTAG)n Simple_repeat Simple_repeat 4 66 0 283 287 195 5 chr12 34763219 34763414 -109023041 + MIR SINE MIR 23 254 -8 351 65 0 0 chr12 34763420 34763466 -109022989 + (CACCAT)n Simple_repeat Simple_repeat 6 51 0 275 357 0 10 chr12 34763509 34763607 -109022848 + L2 LINE L2 3169 3265 -7 1577 171 47 0 chr12 34764089 34764363 -109022092 + AluJo SINE Alu 1 287 -25 2272 113 0 6 chr12 34764374 34764685 -109021770 + AluSq SINE Alu 1 309 -4 2161 82 3 82 chr12 34765758 34766086 -109020369 + AluSq SINE Alu 1 302 -11 552 147 0 0 chr12 34767554 34767656 -109018799 + L1MA5A LINE L1 6194 6295 -2 694 149 57 28 chr12 34767659 34767800 -109018655 + FRAM SINE Alu 26 170 -6 2196 118 0 7 chr12 34767832 34768137 -109018318 + AluSx SINE Alu 1 303 -9 809 214 7 0 chr12 34768188 34768333 -109018122 + FRAM SINE Alu 1 146 -30 225 94 0 0 chr12 34768333 34768365 -109018090 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 1686 153 25 68 chr12 34769029 34769355 -109017100 + AluJo SINE Alu 1 312 0 2159 97 45 0 chr12 34769506 34769796 -109016659 + AluSc SINE Alu 1 303 -6 199 309 0 0 chr12 34769939 34769994 -109016461 + L2 LINE L2 3206 3260 -12 393 358 8 0 chr12 34770005 34770139 -109016316 + MIR SINE MIR 21 155 -107 428 193 12 0 chr12 34770295 34770378 -109016077 - FLAM_A SINE Alu -13 129 46 210 291 118 9 chr12 34770851 34770961 -109015494 - MIR SINE MIR -4 258 137 2237 126 0 0 chr12 34770999 34771308 -109015147 - AluSx SINE Alu -3 309 1 301 309 71 0 chr12 34771313 34771397 -109015058 - MIR SINE MIR -63 145 56 2078 106 14 17 chr12 34771619 34771911 -109014544 + AluSx SINE Alu 2 292 -20 1401 168 16 12 chr12 34772017 34772261 -109014194 + AluJb SINE Alu 1 245 -67 2065 117 0 0 chr12 34772504 34772795 -109013660 + AluSx SINE Alu 1 291 -21 524 233 160 13 chr12 34772951 34773101 -109013354 + MER5A DNA MER1_type 18 189 0 21 57 0 0 chr12 34776996 34777031 -109009424 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 34778745 34778767 -109007688 + AT_rich Low_complexity Low_complexity 1 22 0 1007 37 19 25 chr12 34780504 34780665 -109005790 + (TTC)n Simple_repeat Simple_repeat 2 161 0 2180 93 0 0 chr12 34780668 34780947 -109005508 - AluSg SINE Alu -31 279 1 1678 211 0 3 chr12 34780950 34781248 -109005207 - AluJb SINE Alu -15 297 1 1733 185 3 7 chr12 34781583 34781881 -109004574 - AluJo SINE Alu -13 299 3 2418 90 0 3 chr12 34782118 34782428 -109004027 - AluY SINE Alu -2 309 1 25 31 0 0 chr12 34782433 34782465 -109003990 + AT_rich Low_complexity Low_complexity 1 32 0 2028 102 7 4 chr12 34782478 34782753 -109003702 - AluSq SINE Alu -37 276 1 862 211 6 17 chr12 34782879 34783059 -109003396 - MER45A DNA AcHobo 0 178 1 2251 118 0 16 chr12 34783131 34783446 -109003009 + AluSg SINE Alu 1 310 0 2254 79 0 16 chr12 34784232 34784536 -109001919 + AluY SINE Alu 1 299 -12 301 291 46 53 chr12 34784613 34784728 -109001727 + MIR SINE MIR 53 168 -94 1568 101 50 126 chr12 34784728 34785045 -109001410 + AluSx SINE Alu 1 293 -19 301 291 46 53 chr12 34785045 34785080 -109001375 + MIR SINE MIR 168 202 -60 1203 134 205 13 chr12 34785146 34785385 -109001070 + AluSx SINE Alu 1 285 -27 2142 76 4 0 chr12 34785524 34785800 -109000655 + AluSg SINE Alu 5 281 -29 2298 114 0 10 chr12 34785958 34786266 -109000189 + AluSx SINE Alu 1 305 -7 292 240 0 40 chr12 34786291 34786366 -109000089 - MER5A DNA MER1_type -87 102 31 330 253 61 121 chr12 34786366 34786486 -108999969 + MER5A DNA MER1_type 4 130 -59 2465 77 0 6 chr12 34786486 34786797 -108999658 - AluSg1 SINE Alu 0 309 1 330 253 61 121 chr12 34786797 34786808 -108999647 + MER5A DNA MER1_type 130 140 -49 2475 86 0 0 chr12 34786808 34787110 -108999345 - AluSq SINE Alu -11 302 1 330 253 61 121 chr12 34787110 34787175 -108999280 + MER5A DNA MER1_type 140 189 0 1555 166 4 16 chr12 34787657 34787850 -108998605 - AluSx SINE Alu 0 327 137 2221 103 7 0 chr12 34787850 34788150 -108998305 - AluSp SINE Alu -11 302 1 1555 166 4 16 chr12 34788150 34788244 -108998211 - AluSx SINE Alu -190 137 43 2274 117 7 0 chr12 34788960 34789268 -108997187 - AluSq SINE Alu -3 310 1 689 209 0 36 chr12 34789567 34789706 -108996749 + FLAM_C SINE Alu 3 136 -7 2196 82 7 10 chr12 34789727 34790020 -108996435 + AluY SINE Alu 1 292 -19 1212 158 14 18 chr12 34790121 34790342 -108996113 - MER41B LTR ERV1 -137 498 279 978 136 0 6 chr12 34790380 34790542 -108995913 - L1MA8 LINE L1 -316 5975 5815 29765 93 14 9 chr12 34790547 34796218 -108990237 - L1PA7 LINE L1 -3 6466 740 926 59 47 59 chr12 34796218 34796387 -108990068 - MER41B LTR ERV1 -338 297 131 2296 124 0 0 chr12 34796495 34796802 -108989653 + AluSx SINE Alu 1 307 -5 1065 159 6 0 chr12 34798094 34798257 -108988198 + AluSg/x SINE Alu 135 298 -12 927 209 9 57 chr12 34798413 34798643 -108987812 - AluJo SINE Alu -46 266 48 645 80 0 0 chr12 34798643 34798731 -108987724 + Alu SINE Alu 221 308 -2 1035 93 7 0 chr12 34798731 34798870 -108987585 + AluYb8 SINE Alu 1 140 -178 549 250 7 0 chr12 34798896 34799044 -108987411 + L1MD2 LINE L1 6194 6342 -17 448 217 121 18 chr12 34799080 34799114 -108987341 - MER3 DNA MER1_type -21 188 159 2127 131 7 0 chr12 34799114 34799411 -108987044 + AluSg SINE Alu 1 299 -11 448 217 121 18 chr12 34799411 34799542 -108986913 - MER3 DNA MER1_type -50 159 6 2319 75 3 3 chr12 34799844 34800137 -108986318 - AluSc SINE Alu -16 293 1 432 132 0 66 chr12 34800137 34800228 -108986227 - Tigger1 DNA MER2_type -264 2154 2070 905 174 10 36 chr12 34800229 34800424 -108986031 + Tigger2 DNA MER2_type 2529 2718 0 250 311 97 10 chr12 34800571 34800674 -108985781 - MIR SINE MIR -65 143 32 446 333 114 13 chr12 34800695 34800932 -108985523 + MIR SINE MIR 2 262 0 1849 146 0 0 chr12 34801071 34801376 -108985079 + AluSx SINE Alu 1 305 0 2005 133 0 3 chr12 34801929 34802222 -108984233 - AluSx SINE Alu -20 292 1 2249 97 0 22 chr12 34802223 34802534 -108983921 - AluSx SINE Alu -8 304 1 460 110 0 0 chr12 34803375 34803448 -108983007 - Alu SINE Alu -5 307 235 197 241 74 0 chr12 34805265 34805319 -108981136 + MIR3 SINE MIR 113 170 -38 2011 116 0 0 chr12 34805691 34805958 -108980497 + AluSx SINE Alu 1 267 -45 186 143 0 0 chr12 34807036 34807071 -108979384 + (CA)n Simple_repeat Simple_repeat 2 36 0 1654 130 20 16 chr12 34807108 34807355 -108979100 + AluSx SINE Alu 1 248 -64 2200 104 0 0 chr12 34807544 34807843 -108978612 + AluSg SINE Alu 1 299 -11 334 330 84 14 chr12 34808638 34808825 -108977630 + MIR SINE MIR 16 207 -55 263 230 16 8 chr12 34808973 34809041 -108977414 - Charlie7 DNA MER1_type -72 2540 2469 1703 148 40 10 chr12 34809041 34809339 -108977116 - AluJo SINE Alu -5 307 1 263 230 16 8 chr12 34809339 34809396 -108977059 - Charlie7 DNA MER1_type -143 2469 2414 393 266 39 0 chr12 34809397 34809525 -108976930 - Charlie7 DNA MER1_type -1915 697 565 1605 172 13 41 chr12 34809563 34809877 -108976578 + AluJo SINE Alu 1 305 -7 202 238 16 0 chr12 34809898 34809961 -108976494 + T-rich Low_complexity Low_complexity 4 67 0 1129 285 6 128 chr12 34810076 34810420 -108976035 + AluSx SINE Alu 1 302 0 239 211 35 18 chr12 34810675 34810732 -108975723 + MIR SINE MIR 89 146 -62 224 269 77 0 chr12 34810865 34810917 -108975538 + MIR SINE MIR 66 121 -87 22 35 0 0 chr12 34811106 34811135 -108975320 + AT_rich Low_complexity Low_complexity 1 29 0 1763 154 16 41 chr12 34811139 34811457 -108974998 + AluJb SINE Alu 3 312 0 31 0 0 0 chr12 34811670 34811701 -108974754 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 34814286 34814309 -108972146 + AT_rich Low_complexity Low_complexity 1 23 0 280 255 118 39 chr12 34815742 34815895 -108970560 - L2 LINE L2 0 3313 3149 199 275 19 24 chr12 34815959 34816068 -108970387 + MIR SINE MIR 91 145 -63 2005 149 0 7 chr12 34816077 34816372 -108970083 + AluSx SINE Alu 1 293 -19 434 39 52 0 chr12 34816372 34816449 -108970006 + (TA)n Simple_repeat Simple_repeat 1 81 0 2317 87 3 0 chr12 34816693 34816981 -108969474 - AluSx SINE Alu -23 289 1 307 263 39 101 chr12 34817052 34817128 -108969327 - L1MC4a LINE L1 -1906 5902 5823 2289 110 0 7 chr12 34817128 34817436 -108969019 - AluSx SINE Alu -6 306 1 307 263 39 101 chr12 34817436 34817504 -108968951 - L1MC4a LINE L1 -1985 5823 5768 2367 107 3 0 chr12 34817504 34817814 -108968641 - AluSp SINE Alu -2 311 1 307 263 39 101 chr12 34817814 34817847 -108968608 - L1MC4a LINE L1 -2040 5768 5735 21 36 0 0 chr12 34817847 34817875 -108968580 + AT_rich Low_complexity Low_complexity 1 28 0 223 275 62 0 chr12 34817958 34818038 -108968417 - MIR SINE MIR -26 236 152 2057 123 33 0 chr12 34818307 34818609 -108967846 - AluSx SINE Alu 0 312 1 1523 146 6 122 chr12 34818894 34819261 -108967194 + MLT2B3 LTR ERVL 219 552 -2 429 239 185 0 chr12 34819417 34819547 -108966908 - MLT1H1 LTR MaLR 0 555 402 344 269 47 36 chr12 34819602 34819815 -108966640 - MLT1H LTR MaLR -300 249 20 4433 130 20 124 chr12 34819965 34821508 -108964947 + pTR5 LTR ERV1 743 2606 0 2393 73 0 3 chr12 34821662 34821962 -108964493 + AluY SINE Alu 1 299 -12 2782 180 51 25 chr12 34821967 34822484 -108963971 + L1MB8 LINE L1 5503 6040 -138 1898 138 21 7 chr12 34822484 34822775 -108963680 + AluJb SINE Alu 1 295 -17 2782 180 51 25 chr12 34822775 34822862 -108963593 + L1MB8 LINE L1 6040 6123 -55 339 326 14 48 chr12 34823096 34823243 -108963212 - MLT1-int LTR MaLR -500 871 730 679 239 85 23 chr12 34823382 34823558 -108962897 + MER5A DNA MER1_type 3 189 0 438 319 0 7 chr12 34823800 34823944 -108962511 - MLT1-int LTR MaLR -830 541 399 942 289 128 56 chr12 34824130 34824467 -108961988 - MLT1G1 LTR MaLR 0 595 211 475 237 136 17 chr12 34824467 34824585 -108961870 + FLAM_A SINE Alu 1 132 -1 942 289 128 56 chr12 34824585 34824732 -108961723 - MLT1G1 LTR MaLR -384 211 76 2195 112 7 0 chr12 34824863 34825157 -108961298 + AluSq SINE Alu 1 296 -17 556 115 195 0 chr12 34825241 34825328 -108961127 - U6 snRNA snRNA -3 104 1 1768 163 0 17 chr12 34826128 34826422 -108960033 - AluSx SINE Alu -23 289 1 562 187 0 0 chr12 34827221 34827312 -108959143 - FLAM SINE Alu -13 130 40 1837 146 3 14 chr12 34827521 34827808 -108958647 - AluJb SINE Alu -24 288 5 621 59 0 0 chr12 34828650 34828735 -108957720 - AluSq SINE Alu 0 313 229 1098 96 0 25 chr12 34828736 34828893 -108957562 - AluSq SINE Alu -160 153 1 1533 215 60 57 chr12 34829621 34830058 -108956397 + L1MC4a LINE L1 6441 6878 -930 2442 211 69 34 chr12 34830120 34830143 -108956312 + L1MC4 LINE L1 7240 7261 -781 1599 193 0 35 chr12 34830143 34830284 -108956171 + AluJb SINE Alu 1 145 -167 2238 99 0 0 chr12 34830284 34830609 -108955846 + AluSg SINE Alu 1 325 0 1599 193 0 35 chr12 34830609 34830777 -108955678 + AluJb SINE Alu 145 300 -12 2442 211 69 34 chr12 34830777 34831402 -108955053 + L1MC4 LINE L1 7261 7911 -131 2218 105 3 7 chr12 34831836 34832140 -108954315 - AluSq SINE Alu -10 303 1 402 224 59 0 chr12 34832626 34832711 -108953744 - L2 LINE L2 -5 3267 3178 524 220 115 140 chr12 34833796 34834106 -108952349 + MER39 LTR ERV1 1 491 -216 339 167 0 197 chr12 34834082 34834214 -108952241 - MLT1A1 LTR MaLR -259 106 1 * 1571 164 52 11 chr12 34834343 34834630 -108951825 - AluJb SINE Alu -13 299 1 25 31 0 0 chr12 34835194 34835226 -108951229 + AT_rich Low_complexity Low_complexity 1 32 0 2399 103 0 0 chr12 34835810 34836120 -108950335 + AluSq SINE Alu 1 310 -3 2059 146 7 0 chr12 34836192 34836501 -108949954 + AluJb SINE Alu 1 311 -1 334 190 0 0 chr12 34836508 34836566 -108949889 + L1MB8 LINE L1 6115 6172 -6 1131 121 56 108 chr12 34836748 34836979 -108949476 + AluJo SINE Alu 86 304 -8 1031 184 0 6 chr12 34836998 34837161 -108949294 + FRAM SINE Alu 1 162 -4 459 141 167 0 chr12 34837173 34837251 -108949204 - FLAM_A SINE Alu -32 110 20 1259 115 92 4 chr12 34837331 34837657 -108948798 + L1MA8 LINE L1 5139 5488 -743 2066 115 24 3 chr12 34837658 34837953 -108948502 + AluSx SINE Alu 3 303 -9 14517 162 51 24 chr12 34837964 34838162 -108948293 + L1M1 LINE L1 13 204 -7361 2373 97 0 0 chr12 34838162 34838470 -108947985 + AluY SINE Alu 1 308 -3 14517 162 51 24 chr12 34838470 34840911 -108945544 + L1M1 LINE L1 204 2724 -4841 3458 158 78 36 chr12 34840896 34841604 -108944851 + L1MA8 LINE L1 5505 6249 -42 * 2243 60 14 11 chr12 34841604 34841926 -108944529 + AluY SINE Alu 1 323 0 3458 158 78 36 chr12 34841926 34841971 -108944484 + L1MA8 LINE L1 6249 6291 0 2002 142 3 0 chr12 34842324 34842613 -108943842 + AluSx SINE Alu 1 290 -22 2080 133 30 0 chr12 34843378 34843679 -108942776 - AluSx SINE Alu -2 310 1 324 0 0 0 chr12 34844996 34845032 -108941423 + (CA)n Simple_repeat Simple_repeat 2 37 0 400 321 147 9 chr12 34845038 34845256 -108941199 - MIR SINE MIR 0 262 15 2152 92 36 13 chr12 34845284 34845588 -108940867 + AluSp SINE Alu 1 311 -2 2414 76 0 0 chr12 34846376 34846664 -108939791 + AluSc SINE Alu 1 288 -21 231 36 0 0 chr12 34846668 34846696 -108939759 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2216 82 41 0 chr12 34846893 34847184 -108939271 + AluSx SINE Alu 1 303 -9 1457 162 34 0 chr12 34847241 34847476 -108938979 + AluSx SINE Alu 1 243 -69 35 0 0 22 chr12 34848012 34848029 -108938426 + AT_rich Low_complexity Low_complexity 1 17 -28 8190 25 1 0 chr12 34848029 34849444 -108937011 + L1PA3 LINE L1 4737 6152 -3 35 0 0 22 chr12 34849444 34849472 -108936983 + AT_rich Low_complexity Low_complexity 17 45 0 281 24 49 0 chr12 34849539 34849580 -108936875 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2026 106 11 7 chr12 34849592 34849898 -108936557 + AluSg1 SINE Alu 1 307 0 772 260 63 27 chr12 34850500 34850751 -108935704 - MIR SINE MIR -3 259 2 912 199 74 98 chr12 34850832 34851158 -108935297 + MLT1A1 LTR MaLR 1 318 -47 3673 121 112 26 chr12 34851170 34851429 -108935026 - Tigger1 DNA MER2_type -1410 1008 773 2202 119 3 0 chr12 34851429 34851731 -108934724 + AluSx SINE Alu 3 305 -7 3673 121 112 26 chr12 34851731 34852239 -108934216 - Tigger1 DNA MER2_type -1645 773 125 328 232 21 32 chr12 34852527 34852622 -108933833 - MIR SINE MIR -1 261 168 2047 130 35 0 chr12 34852899 34853183 -108933272 - AluSx SINE Alu -18 294 1 2264 228 65 41 chr12 34853183 34853794 -108932661 - L1ME1 LINE L1 -56 6110 5485 2354 101 13 0 chr12 34853803 34854111 -108932344 - AluSp SINE Alu -1 312 1 1172 128 48 0 chr12 34854116 34854304 -108932151 + Tigger1 DNA MER2_type 2222 2418 0 606 192 0 25 chr12 34854304 34854421 -108932034 - MER106B DNA MER1_type -921 138 25 1526 213 62 66 chr12 34854421 34854919 -108931536 - MLT1D LTR MaLR -2 503 8 1840 144 35 3 chr12 34856133 34856236 -108930219 + AluJb SINE Alu 18 116 -196 246 32 0 0 chr12 34856236 34856267 -108930188 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1840 144 35 3 chr12 34856267 34856447 -108930008 + AluJb SINE Alu 116 310 -2 2076 124 6 19 chr12 34856447 34856762 -108929693 + AluSx SINE Alu 1 311 -1 815 270 14 5 chr12 34857041 34857256 -108929199 + MIR SINE MIR 45 261 -1 1901 137 3 51 chr12 34857304 34857617 -108928838 - AluJb SINE Alu -14 298 1 2486 81 0 0 chr12 34858833 34859130 -108927325 - AluSc SINE Alu -12 297 1 485 353 6 0 chr12 34859166 34859322 -108927133 + MIR SINE MIR 1 157 -105 950 51 0 0 chr12 34859442 34859560 -108926895 - AluY SINE Alu -4 307 190 568 248 213 5 chr12 34859728 34859930 -108926525 + MIR SINE MIR 5 248 -14 2396 106 3 0 chr12 34859952 34860263 -108926192 + AluSx SINE Alu 1 312 0 774 188 0 0 chr12 34860398 34860531 -108925924 + FLAM_A SINE Alu 1 133 0 1711 197 0 0 chr12 34860560 34860850 -108925605 + AluJb SINE Alu 1 290 -22 511 252 36 22 chr12 34860919 34861058 -108925397 - L2 LINE L2 0 3313 3173 1629 248 119 57 chr12 34861111 34861180 -108925275 - L2 LINE L2 -934 2380 2317 1532 173 76 0 chr12 34861180 34861457 -108924998 + AluJo SINE Alu 1 298 -14 1629 248 119 57 chr12 34861457 34861701 -108924754 - L2 LINE L2 -997 2317 2090 2011 105 10 49 chr12 34861701 34862007 -108924448 + AluSx SINE Alu 1 294 -18 2296 88 7 0 chr12 34862007 34862315 -108924140 + AluSx SINE Alu 1 312 0 1629 248 119 57 chr12 34862315 34862758 -108923697 - L2 LINE L2 -1223 2091 1575 3349 96 96 2 chr12 34862876 34863333 -108923122 - MER61D LTR ERV1 -1 500 1 705 204 121 46 chr12 34864376 34864616 -108921839 + MIR SINE MIR 2 259 -3 1865 149 3 23 chr12 34864903 34865205 -108921250 + AluJb SINE Alu 1 296 -16 979 179 22 6 chr12 34865545 34865724 -108920731 - MLT1D LTR MaLR -19 486 305 498 307 35 61 chr12 34865807 34866182 -108920273 - L1MC4a LINE L1 -1982 5826 5462 474 74 82 12 chr12 34866183 34866440 -108920015 + (TA)n Simple_repeat Simple_repeat 1 275 0 3082 157 93 4 chr12 34866478 34867018 -108919437 - LTR69 LTR ERVL 0 588 1 1914 149 0 34 chr12 34867065 34867386 -108919069 - AluJb SINE Alu -2 310 1 224 310 78 14 chr12 34867841 34867983 -108918472 + L2 LINE L2 3099 3249 -64 342 247 14 0 chr12 34868591 34868664 -108917791 + L2 LINE L2 3232 3305 -8 1633 174 17 113 chr12 34869168 34869582 -108916873 - MLT1A2 LTR MaLR 0 374 1 523 239 222 6 chr12 34869724 34870018 -108916437 + L2 LINE L2 2718 3080 -233 34 24 0 0 chr12 34870137 34870178 -108916277 + AT_rich Low_complexity Low_complexity 1 41 0 533 223 14 126 chr12 34870190 34870254 -108916201 - MIR SINE MIR -16 246 176 1884 167 10 0 chr12 34870254 34870553 -108915902 - AluJo SINE Alu -10 302 1 533 223 14 126 chr12 34870553 34870730 -108915725 - MIR SINE MIR -86 176 33 258 311 85 9 chr12 34870869 34870975 -108915480 + MIR SINE MIR 38 151 -57 2371 96 0 0 chr12 34871136 34871439 -108915016 + AluSc SINE Alu 1 303 -6 937 271 25 21 chr12 34871669 34871994 -108914461 + L1ME LINE L1 5474 5799 -371 * 1143 211 60 116 chr12 34871992 34872612 -108913843 - L1ME3A LINE L1 -297 5873 5345 4332 177 61 42 chr12 34872618 34873554 -108912901 - LTR13 LTR ERVK 0 954 1 966 239 41 60 chr12 34873616 34873934 -108912521 - MLT1I LTR MaLR 0 409 98 2376 100 0 0 chr12 34874128 34874428 -108912027 - AluSp SINE Alu -13 300 1 445 263 211 0 chr12 34874447 34874599 -108911856 + Charlie8 DNA MER1_type 71 254 -2163 360 270 15 96 chr12 34874627 34874809 -108911646 + MER112 DNA MER1_type 1 155 -105 186 103 0 0 chr12 34874809 34874838 -108911617 + (CTATT)n Simple_repeat Simple_repeat 5 33 0 360 270 15 96 chr12 34874838 34874925 -108911530 + MER112 DNA MER1_type 155 248 -12 244 180 60 0 chr12 34875374 34875424 -108911031 - L2 LINE L2 -6 3307 3255 1004 197 183 80 chr12 34876678 34877065 -108909390 + MLT1C LTR MaLR 1 424 -43 1803 156 31 0 chr12 34877065 34877354 -108909101 + AluJb SINE Alu 1 298 -14 1004 197 183 80 chr12 34877354 34877404 -108909051 + MLT1C LTR MaLR 424 467 0 2227 104 7 0 chr12 34877470 34877768 -108908687 + AluSg1 SINE Alu 1 300 -9 21 36 0 0 chr12 34878122 34878150 -108908305 + AT_rich Low_complexity Low_complexity 1 28 0 791 298 29 4 chr12 34878200 34878445 -108908010 + MIR SINE MIR 12 262 0 287 336 80 36 chr12 34878439 34878576 -108907879 + L2 LINE L2 3121 3263 -9 * 2213 113 0 3 chr12 34878699 34878992 -108907463 - AluSx SINE Alu -20 292 1 720 327 37 11 chr12 34879174 34879529 -108906926 - L1MEc LINE L1 -5992 404 41 1753 158 16 50 chr12 34879630 34879953 -108906502 + AluJo SINE Alu 1 312 0 2116 100 0 4 chr12 34880807 34881077 -108905378 + AluSx SINE Alu 30 298 -14 398 244 41 111 chr12 34881494 34881666 -108904789 + L2 LINE L2 3150 3309 -4 463 237 57 48 chr12 34881668 34881896 -108904559 - L1ME3A LINE L1 -879 5267 5038 1605 162 39 18 chr12 34882017 34882301 -108904154 - AluJo SINE Alu -22 290 1 21 57 0 0 chr12 34882306 34882341 -108904114 + AT_rich Low_complexity Low_complexity 1 35 0 2077 106 0 0 chr12 34882717 34882982 -108903473 + AluSx SINE Alu 1 265 -47 652 162 196 0 chr12 34883167 34883315 -108903140 - MER5A DNA MER1_type -6 183 7 1896 138 24 0 chr12 34884051 34884340 -108902115 + AluSg SINE Alu 1 296 -14 1131 231 40 35 chr12 34885631 34885996 -108900459 + LTR24B LTR ERV1 145 467 0 227 355 65 0 chr12 34886089 34886213 -108900242 + MIR3 SINE MIR 2 133 -75 3523 79 7 0 chr12 34886385 34886827 -108899628 - PABL_A LTR ERV1 0 660 216 750 110 0 20 chr12 34886829 34886929 -108899526 + AluSg/x SINE Alu 85 182 -130 2884 106 7 2 chr12 34887909 34888313 -108898142 - MER61B LTR ERV1 0 425 20 27 29 0 0 chr12 34888813 34888847 -108897608 + AT_rich Low_complexity Low_complexity 1 34 0 776 265 19 67 chr12 34888953 34889221 -108897234 + MIR SINE MIR 3 257 -5 3946 57 21 30 chr12 34889728 34890258 -108896197 + LTR17 LTR ERV1 256 780 0 250 65 0 0 chr12 34890258 34890289 -108896166 + HERV17 LTR ERV1 1 31 -8595 * 2177 68 0 0 chr12 34890288 34890554 -108895901 + HERV17 LTR ERV1 8361 8626 0 2562 34 40 25 chr12 34890554 34890875 -108895580 + LTR17 LTR ERV1 1 326 -454 361 102 17 0 chr12 34891009 34891068 -108895387 - L1PA16 LINE L1 -9 6157 6098 227 94 0 0 chr12 34891069 34891101 -108895354 - L1PA16 LINE L1 -105 6061 6030 2220 117 0 0 chr12 34891315 34891613 -108894842 + AluSx SINE Alu 1 298 -14 2320 59 0 10 chr12 34892777 34893100 -108893355 + AluY SINE Alu 3 322 0 1431 171 10 48 chr12 34893309 34893601 -108892854 + L1MB8 LINE L1 5887 6167 -11 2104 104 7 0 chr12 34894022 34894322 -108892133 + AluSp SINE Alu 2 303 0 2096 221 29 54 chr12 34894374 34894930 -108891525 - MER34 LTR ERV1 0 542 1 651 233 7 0 chr12 34895127 34895273 -108891182 - MER103 DNA DNA -7 159 13 462 284 88 109 chr12 34896078 34896412 -108890043 - L2 LINE L2 -45 3268 2918 1613 132 0 0 chr12 34896412 34896639 -108889816 - AluJb SINE Alu 0 312 86 462 284 88 109 chr12 34896639 34896764 -108889691 - L2 LINE L2 -395 2918 2792 554 272 166 30 chr12 34896766 34897097 -108889358 - L2 LINE L2 -1068 2246 1871 203 290 16 16 chr12 34897501 34897563 -108888892 - MIR SINE MIR -183 79 18 323 22 0 22 chr12 34897563 34897608 -108888847 + (CACTC)n Simple_repeat Simple_repeat 5 48 0 368 287 276 8 chr12 34897630 34898017 -108888438 - L2 LINE L2 -2106 1208 718 250 348 65 19 chr12 34898744 34898899 -108887556 + L2 LINE L2 2596 2757 -557 277 368 0 17 chr12 34899301 34899418 -108887037 + L2 LINE L2 2948 3062 -210 359 213 32 21 chr12 34901192 34901286 -108885169 - L2 LINE L2 -214 3099 3005 1324 228 46 3 chr12 34901323 34901625 -108884830 + Charlie4a DNA MER1_type 17 331 -177 794 253 130 75 chr12 34901625 34901735 -108884720 - MLT1H LTR MaLR 0 549 447 2412 82 0 3 chr12 34901735 34902040 -108884415 - AluY SINE Alu -7 304 1 794 253 130 75 chr12 34902040 34902402 -108884053 - MLT1H LTR MaLR -102 447 5 1784 136 12 59 chr12 34902427 34902750 -108883705 - AluJb SINE Alu -4 308 1 25 0 0 0 chr12 34902756 34902781 -108883674 + AT_rich Low_complexity Low_complexity 1 25 0 2147 129 7 0 chr12 34902784 34903078 -108883377 + AluSx SINE Alu 1 296 -16 449 259 61 8 chr12 34903086 34903217 -108883238 + Charlie4a DNA MER1_type 371 508 0 332 261 143 56 chr12 34903217 34903378 -108883077 - L2 LINE L2 -333 2980 2806 201 39 0 0 chr12 34903581 34903607 -108882848 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2153 100 4 0 chr12 34903612 34903883 -108882572 - AluSc SINE Alu -37 272 1 1929 191 67 29 chr12 34904684 34905133 -108881322 + MER31B LTR ERV1 1 466 0 1768 157 39 14 chr12 34905455 34905741 -108880714 + AluJb SINE Alu 1 293 -19 1847 163 17 0 chr12 34905763 34906051 -108880404 + AluJb SINE Alu 3 295 -17 637 203 50 33 chr12 34906173 34906240 -108880215 - L1ME3 LINE L1 -166 5996 5932 1552 158 119 112 chr12 34906240 34906703 -108879752 - MLT1C LTR MaLR -1 466 1 637 203 50 33 chr12 34906703 34906843 -108879612 - L1ME3 LINE L1 -230 5932 5786 577 286 74 65 chr12 34907317 34907518 -108878937 - L1ME4a LINE L1 -114 6007 5809 2281 90 0 39 chr12 34907518 34907830 -108878625 - AluSx SINE Alu -12 300 1 577 286 74 65 chr12 34907830 34908103 -108878352 - L1ME4a LINE L1 -312 5809 5529 1283 121 0 0 chr12 34908672 34908846 -108877609 + AluSg/x SINE Alu 132 305 -5 2485 97 0 0 chr12 34909000 34909311 -108877144 + AluSx SINE Alu 1 311 -1 199 345 71 24 chr12 34909617 34909701 -108876754 - L2 LINE L2 -35 3237 3150 183 42 0 0 chr12 34909757 34909781 -108876674 + (ATTG)n Simple_repeat Simple_repeat 3 26 0 2247 117 3 0 chr12 34909853 34910153 -108876302 - AluSx SINE Alu -11 301 1 2397 97 0 3 chr12 34910447 34910757 -108875698 - AluSc SINE Alu 0 309 1 1624 139 58 30 chr12 34911401 34911696 -108874759 - AluSx SINE Alu -9 303 1 255 279 0 0 chr12 34912036 34912097 -108874358 + L2 LINE L2 3251 3311 -2 1944 154 13 16 chr12 34912104 34912409 -108874046 + AluJb SINE Alu 1 304 -8 2209 92 0 33 chr12 34912482 34912787 -108873668 + AluSg SINE Alu 3 297 -13 2524 69 3 0 chr12 34912789 34913093 -108873362 + AluSp SINE Alu 1 305 -8 1074 167 235 0 chr12 34913782 34914003 -108872452 + AluJb SINE Alu 1 273 -39 1004 244 25 0 chr12 34914103 34914304 -108872151 - MER58A DNA MER1_type -3 221 16 2381 64 3 7 chr12 34914307 34914602 -108871853 - AluY SINE Alu -17 294 1 2244 106 0 31 chr12 34914831 34915152 -108871303 - AluY SINE Alu 0 311 1 1057 173 11 11 chr12 34915694 34915873 -108870582 + AluJb SINE Alu 1 179 -133 979 126 0 66 chr12 34915989 34916084 -108870371 + Tigger5 DNA MER2_type 2168 2249 -74 2218 107 0 31 chr12 34916084 34916402 -108870053 - AluSx SINE Alu -4 308 1 979 126 0 66 chr12 34916402 34916473 -108869982 + Tigger5 DNA MER2_type 2249 2323 0 8658 101 19 36 chr12 34916502 34918375 -108868080 - L1PA4 LINE L1 0 6155 4365 2345 83 3 0 chr12 34918375 34918665 -108867790 + AluSp SINE Alu 2 292 -21 8658 101 19 36 chr12 34918665 34919353 -108867102 - L1PA4 LINE L1 -1790 4365 3667 2154 118 6 22 chr12 34919370 34919685 -108866770 - AluY SINE Alu -1 310 1 1858 168 7 7 chr12 34920227 34920531 -108865924 + AluJb SINE Alu 1 304 -8 593 277 29 54 chr12 34920539 34920613 -108865842 - Charlie8 DNA MER1_type -105 236 162 2406 85 0 0 chr12 34920613 34920920 -108865535 - AluY SINE Alu -4 307 1 593 277 29 54 chr12 34920920 34921087 -108865368 - Charlie8 DNA MER1_type -179 162 1 1721 169 6 32 chr12 34921662 34921975 -108864480 - AluJb SINE Alu -7 305 1 452 307 74 5 chr12 34922134 34922349 -108864106 + MLT1J LTR MaLR 6 235 -276 329 254 43 70 chr12 34922409 34922526 -108863929 + MLT1J LTR MaLR 328 440 -71 2427 80 3 3 chr12 34922526 34922828 -108863627 + AluY SINE Alu 1 302 -9 329 254 43 70 chr12 34922828 34922895 -108863560 + MLT1J LTR MaLR 440 507 -4 23 0 0 0 chr12 34923010 34923033 -108863422 + AT_rich Low_complexity Low_complexity 1 23 0 1607 164 31 45 chr12 34923469 34923787 -108862668 + AluJb SINE Alu 1 314 0 2379 84 3 3 chr12 34924964 34925275 -108861180 - AluY SINE Alu 0 311 1 2299 103 7 3 chr12 34925465 34925775 -108860680 + AluSq SINE Alu 1 311 -2 398 290 122 0 chr12 34926141 34926272 -108860183 + MER5A DNA MER1_type 13 159 -30 365 313 60 8 chr12 34927119 34927253 -108859202 + MIR SINE MIR 121 261 -1 26 50 0 0 chr12 34927297 34927337 -108859118 + AT_rich Low_complexity Low_complexity 1 40 0 790 237 40 13 chr12 34928079 34928307 -108858148 - MER46C DNA MER2_type -16 322 89 1199 28 0 0 chr12 34928511 34928655 -108857800 - L1PA5 LINE L1 0 6154 6011 604 62 73 0 chr12 34928876 34928972 -108857483 + L1MA8 LINE L1 6048 6150 -141 567 147 101 0 chr12 34929461 34929590 -108856865 + L1MA8 LINE L1 6148 6289 -2 5631 48 39 17 chr12 34929752 34929947 -108856508 - MER4E LTR ERV1 0 766 577 2424 79 3 10 chr12 34929947 34930251 -108856204 + AluSc SINE Alu 1 302 -7 5631 48 39 17 chr12 34930251 34930805 -108855650 - MER4E LTR ERV1 -189 577 1 516 312 7 0 chr12 34930956 34931094 -108855361 - MER91B DNA MER1_type -51 139 1 503 283 0 26 chr12 34932070 34932222 -108854233 - MIR SINE MIR -45 217 70 1857 150 6 26 chr12 34932425 34932738 -108853717 + AluJb SINE Alu 1 307 -5 3470 175 37 32 chr12 34932738 34933493 -108852962 - L1MB8 LINE L1 -259 5919 5167 1133 126 0 60 chr12 34933493 34933676 -108852779 - FAM SINE Alu -3 172 1 3470 175 37 32 chr12 34933676 34934398 -108852057 - L1MB8 LINE L1 -1011 5167 4450 1997 131 8 64 chr12 34934398 34934585 -108851870 + MER47A DNA MER2_type 1 197 -2126 2377 103 0 0 chr12 34934585 34934885 -108851570 + AluSx SINE Alu 1 300 -12 1997 131 8 64 chr12 34934885 34935013 -108851442 + MER47A DNA MER2_type 197 293 -2030 2216 110 0 31 chr12 34935013 34935332 -108851123 - AluSx SINE Alu -3 309 1 1997 131 8 64 chr12 34935332 34935403 -108851052 + MER47A DNA MER2_type 293 366 0 7542 29 2 13 chr12 34935442 34936724 -108849731 - L1PA4 LINE L1 -6 6149 4871 1818 141 0 0 chr12 34936929 34937191 -108849264 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 34937355 34937419 -108849036 + CT-rich Low_complexity Low_complexity 1 66 0 2486 197 66 58 chr12 34938157 34938349 -108848106 - Tigger6a DNA MER2_type -834 763 574 2264 87 0 32 chr12 34938349 34938660 -108847795 - AluSg SINE Alu -9 301 1 2486 197 66 58 chr12 34938660 34938808 -108847647 - Tigger6a DNA MER2_type -1023 574 429 593 170 107 9 chr12 34938808 34938920 -108847535 - FLAM_A SINE Alu -10 123 1 2486 197 66 58 chr12 34938920 34939333 -108847122 - Tigger6a DNA MER2_type -1168 429 3 28 29 0 0 chr12 34939467 34939502 -108846953 + AT_rich Low_complexity Low_complexity 1 35 0 2308 70 6 29 chr12 34939575 34939888 -108846567 + AluY SINE Alu 1 306 -5 1680 190 10 3 chr12 34940385 34940680 -108845775 + AluJb SINE Alu 1 297 -15 2102 113 28 0 chr12 34942888 34943179 -108843276 - AluSx SINE Alu -13 299 1 2355 32 0 0 chr12 34944074 34944352 -108842103 + L1PA5 LINE L1 5860 6137 -17 40 0 0 0 chr12 34944352 34944392 -108842063 + AT_rich Low_complexity Low_complexity 1 40 0 2243 92 3 3 chr12 34944637 34944931 -108841524 + AluSp SINE Alu 3 296 -17 1790 110 116 15 chr12 34945213 34945541 -108840914 - MER46B DNA MER2_type 0 236 1 2555 76 16 16 chr12 34945806 34946173 -108840282 + L1PA12 LINE L1 5800 6166 -2 487 363 71 42 chr12 34946257 34946637 -108839818 - L2 LINE L2 -10 3262 2872 2360 71 0 0 chr12 34948937 34949232 -108837223 - AluY SINE Alu -16 295 1 1912 139 7 16 chr12 34949363 34949666 -108836789 - AluJb SINE Alu -12 300 1 466 100 0 0 chr12 34949837 34949897 -108836558 + Alu SINE Alu 225 284 -25 22 0 0 0 chr12 34949897 34949919 -108836536 + AT_rich Low_complexity Low_complexity 1 22 0 870 158 0 0 chr12 34950612 34950739 -108835716 + FLAM_C SINE Alu 1 127 -16 2197 109 0 10 chr12 34950744 34951048 -108835407 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 34951058 34951084 -108835371 + AT_rich Low_complexity Low_complexity 1 26 0 183 129 0 0 chr12 34953359 34953390 -108833065 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 624 227 34 89 chr12 34953593 34953862 -108832593 + MER102b DNA MER1_type 84 337 -4 349 322 120 33 chr12 34954475 34954776 -108831679 - L1ME4a LINE L1 -248 5873 5547 1834 143 42 0 chr12 34954976 34955262 -108831193 + AluJb SINE Alu 1 298 -14 364 225 35 7 chr12 34955887 34956027 -108830428 + L1MC4 LINE L1 1991 6995 -1327 2332 93 10 0 chr12 34956031 34956333 -108830122 - AluY SINE Alu -6 305 1 351 154 0 0 chr12 34957092 34957157 -108829298 + CT-rich Low_complexity Low_complexity 2 66 0 231 289 0 26 chr12 34957397 34957473 -108828982 + CT-rich Low_complexity Low_complexity 4 77 0 299 279 221 0 chr12 34957782 34957886 -108828569 - L2 LINE L2 -8 3264 3138 1715 152 47 4 chr12 34958808 34959084 -108827371 + AluJo SINE Alu 22 309 -3 237 234 0 16 chr12 34959259 34959323 -108827132 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 593 193 6 47 chr12 34959559 34959650 -108826805 - Charlie5 DNA MER1_type 0 2585 2503 2091 143 3 0 chr12 34959650 34959951 -108826504 + AluJb SINE Alu 1 302 -10 593 193 6 47 chr12 34959951 34960030 -108826425 - Charlie5 DNA MER1_type -82 2503 2422 2242 87 10 7 chr12 34960030 34960319 -108826136 + AluSq SINE Alu 11 300 -13 396 0 0 0 chr12 34961385 34961429 -108825026 + (TA)n Simple_repeat Simple_repeat 2 45 0 1960 122 54 3 chr12 34962851 34963145 -108823310 + AluJb SINE Alu 1 309 -3 24 32 0 0 chr12 34963800 34963831 -108822624 + AT_rich Low_complexity Low_complexity 1 31 0 2454 87 0 6 chr12 34963854 34964166 -108822289 + AluSx SINE Alu 1 310 -2 2287 97 0 20 chr12 34964273 34964572 -108821883 + AluSg SINE Alu 1 293 -17 2353 89 0 0 chr12 34964575 34964867 -108821588 + AluSg SINE Alu 1 292 -18 1097 109 0 2 chr12 34964901 34965149 -108821306 + AluSc SINE Alu 1 293 -16 1038 177 6 0 chr12 34965377 34965552 -108820903 + AluJb SINE Alu 136 311 -1 2206 115 0 20 chr12 34968169 34968473 -108817982 + AluSx SINE Alu 1 298 -14 196 318 91 11 chr12 34968666 34968754 -108817701 + L2 LINE L2 2409 2503 -811 348 355 19 13 chr12 34968770 34968925 -108817530 - MIR SINE MIR -54 208 53 1716 134 70 24 chr12 34969019 34969317 -108817138 + AluSx SINE Alu 1 312 0 521 168 0 53 chr12 34969830 34969925 -108816530 - AluJb SINE Alu -158 154 65 2374 85 0 13 chr12 34970219 34970526 -108815929 - AluY SINE Alu -8 303 1 312 300 57 30 chr12 34971736 34971966 -108814489 - L1ME4a LINE L1 -198 5923 5688 28 48 0 0 chr12 34972178 34972220 -108814235 + AT_rich Low_complexity Low_complexity 1 42 0 1892 136 24 21 chr12 34972222 34972509 -108813946 - AluSx SINE Alu -24 288 1 746 168 8 24 chr12 34972520 34972645 -108813810 - FLAM_A SINE Alu -8 125 3 2442 72 0 0 chr12 34973441 34973733 -108812722 + AluSg SINE Alu 1 292 -18 237 345 108 0 chr12 34974440 34974579 -108811876 - MIR SINE MIR -4 258 105 23 0 0 0 chr12 34974579 34974602 -108811853 + AT_rich Low_complexity Low_complexity 1 23 0 682 248 199 11 chr12 34974627 34974998 -108811457 - L1ME4a LINE L1 -844 5302 4862 2209 96 7 7 chr12 34975182 34975474 -108810981 - AluSg SINE Alu -13 297 6 192 40 0 0 chr12 34975915 34975940 -108810515 + (A)n Simple_repeat Simple_repeat 1 25 0 266 257 0 14 chr12 34976029 34976103 -108810352 + L1M4 LINE L1 3433 3505 -2641 202 261 22 0 chr12 34976112 34976158 -108810297 - MER5A DNA MER1_type -142 47 1 253 254 14 0 chr12 34977222 34977293 -108809162 + L1ME4a LINE L1 5981 6052 -69 777 272 79 58 chr12 34978420 34978813 -108807642 - L2 LINE L2 0 3313 2913 1254 164 82 4 chr12 34978853 34978991 -108807464 - AluJo SINE Alu -37 275 110 183 42 0 0 chr12 34978991 34979015 -108807440 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1254 164 82 4 chr12 34979015 34979107 -108807348 - AluJo SINE Alu -202 110 27 2434 66 3 3 chr12 34980197 34980498 -108805957 + AluY SINE Alu 1 301 -10 368 287 91 14 chr12 34982737 34982880 -108803575 - MIR3 SINE MIR -11 197 44 1616 246 69 50 chr12 34982942 34983381 -108803074 + MER119 DNA MER1_type 8 463 -120 2081 96 19 0 chr12 34983381 34983679 -108802776 - AluSg SINE Alu 0 307 5 1616 246 69 50 chr12 34983679 34983803 -108802652 + MER119 DNA MER1_type 463 583 0 1805 152 41 7 chr12 34984517 34984807 -108801648 + AluJb SINE Alu 2 301 -11 454 296 70 0 chr12 34984950 34985122 -108801333 + MIR SINE MIR 77 260 -2 2183 100 0 0 chr12 34985161 34985514 -108800941 - AluSg SINE Alu 0 353 1 321 303 69 87 chr12 34985639 34985870 -108800585 - L2 LINE L2 -1 3271 3045 1064 193 0 21 chr12 34985873 34986060 -108800395 - AluJo SINE Alu -51 261 79 299 294 35 0 chr12 34990786 34990871 -108795584 - MIR3 SINE MIR -54 154 67 543 321 57 48 chr12 34991474 34991711 -108794744 - L2 LINE L2 -3 3310 3068 3767 36 0 0 chr12 34991711 34992131 -108794324 - L1PA3 LINE L1 0 6155 5736 543 321 57 48 chr12 34992131 34992226 -108794229 - L2 LINE L2 -245 3068 2975 345 277 15 46 chr12 34992442 34992572 -108793883 + MIR SINE MIR 23 148 -60 230 299 15 0 chr12 34994335 34994402 -108792053 + L1ME4a LINE L1 5518 5585 -599 467 274 151 27 chr12 34994863 34995155 -108791300 + L1ME4a LINE L1 5588 5915 -206 509 323 63 5 chr12 34995446 34995635 -108790820 + L3 LINE CR1 1369 1568 -9 2182 58 47 14 chr12 34996106 34996384 -108790071 - AluY SINE Alu -24 287 1 326 180 0 0 chr12 34996621 34996671 -108789784 + 5S rRNA rRNA 1 50 -71 2174 122 0 0 chr12 34996947 34997243 -108789212 + AluSx SINE Alu 1 296 -16 386 342 87 63 chr12 34998005 34998593 -108787862 - L2 LINE L2 -338 2976 2375 1202 135 0 0 chr12 34999296 34999466 -108786989 - AluJ SINE Alu -14 298 129 823 168 58 7 chr12 34999661 34999798 -108786657 - AluJ SINE Alu -167 145 2 199 385 37 9 chr12 35000100 35000209 -108786246 + L2 LINE L2 3141 3252 -20 1276 191 65 14 chr12 35000948 35001226 -108785229 - AluJb SINE Alu -20 292 1 1933 150 25 0 chr12 35002393 35002679 -108783776 + AluJb SINE Alu 1 293 -19 1582 114 4 0 chr12 35003052 35003280 -108783175 + AluSp SINE Alu 74 302 -11 1585 213 123 103 chr12 35003479 35003615 -108782840 + Charlie7 DNA MER1_type 1479 1611 -1001 2380 93 0 3 chr12 35003615 35003925 -108782530 + AluSp SINE Alu 1 309 -4 1585 213 123 103 chr12 35003925 35004290 -108782165 + Charlie7 DNA MER1_type 1611 1967 -645 856 139 0 36 chr12 35004290 35004427 -108782028 + FLAM_C SINE Alu 1 132 -1 1585 213 123 103 chr12 35004427 35004438 -108782017 + Charlie7 DNA MER1_type 1967 1976 -636 2121 122 0 29 chr12 35004438 35004750 -108781705 + AluSx SINE Alu 1 303 -9 1585 213 123 103 chr12 35004750 35005034 -108781421 + Charlie7 DNA MER1_type 1976 2293 -319 1349 95 0 0 chr12 35005208 35005387 -108781068 - AluY SINE Alu -2 309 131 22 0 0 0 chr12 35006259 35006281 -108780174 + AT_rich Low_complexity Low_complexity 1 22 0 186 326 11 54 chr12 35007175 35007267 -108779188 + L2 LINE L2 2956 3043 -229 940 173 31 0 chr12 35007533 35007695 -108778760 - L1MB3 LINE L1 0 6183 6017 2368 67 0 13 chr12 35007950 35008248 -108778207 + AluY SINE Alu 1 294 -17 2496 65 0 0 chr12 35008372 35008680 -108777775 + AluY SINE Alu 1 308 -3 1758 170 3 0 chr12 35008813 35009095 -108777360 + AluJo SINE Alu 14 296 -16 650 140 309 6 chr12 35009419 35009597 -108776858 - MER21A LTR ERV1 -699 232 1 308 206 144 0 chr12 35009645 35009742 -108776713 - L1ME3A LINE L1 -239 5931 5821 5352 143 168 26 chr12 35009747 35010871 -108775584 + pTR5 LTR ERV1 742 2025 -413 309 276 10 0 chr12 35010871 35010969 -108775486 + LTR30 LTR ERV1 544 642 -80 1211 136 60 5 chr12 35010972 35011171 -108775284 + LTR12 LTR ERV1 379 588 -126 2232 94 7 7 chr12 35011430 35011727 -108774728 - AluSg SINE Alu -13 297 1 285 283 40 0 chr12 35011727 35011826 -108774629 + L1ME LINE L1 5465 5567 -597 1276 269 162 47 chr12 35011901 35012765 -108773690 - L2 LINE L2 -1 3312 2303 1885 156 3 10 chr12 35013700 35014001 -108772454 + AluSx SINE Alu 1 299 -13 662 226 39 96 chr12 35014087 35014317 -108772138 - MER20 DNA MER1_type -1 218 2 2843 119 28 18 chr12 35014362 35014798 -108771657 - MER83 LTR ERV1 -8 440 1 1708 172 10 113 chr12 35015292 35015699 -108770756 + MLT1A1 LTR MaLR 1 365 0 10390 27 1 161 chr12 35017625 35019272 -108767183 + SVA Other Other 1 1383 -3 2522 82 0 6 chr12 35020300 35020615 -108765840 + AluSq SINE Alu 1 313 0 1387 143 13 26 chr12 35020765 35020996 -108765459 + AluJo SINE Alu 71 298 -14 22 0 0 0 chr12 35021113 35021135 -108765320 + AT_rich Low_complexity Low_complexity 1 22 0 1525 183 17 33 chr12 35021135 35021435 -108765020 + AluJb SINE Alu 1 295 -17 382 193 67 67 chr12 35022221 35022356 -108764099 + MER58C DNA MER1_type 81 215 0 1306 198 37 43 chr12 35023435 35023763 -108762692 - L1MD3 LINE L1 -256 7739 7414 2516 75 3 0 chr12 35024244 35024551 -108761904 - AluSc SINE Alu -1 308 1 1702 213 119 30 chr12 35024599 35025138 -108761317 - L1ME1 LINE L1 -2 6164 5578 1651 126 65 0 chr12 35025325 35025602 -108760853 - MER44D DNA MER2_type 0 609 45 233 227 103 21 chr12 35025667 35025764 -108760691 + MIR SINE MIR 68 172 -90 602 237 41 67 chr12 35026418 35026612 -108759843 + MER5A DNA MER1_type 1 189 0 2338 101 3 0 chr12 35026719 35027027 -108759428 - AluSx SINE Alu -3 309 1 2328 78 51 0 chr12 35030214 35030510 -108755945 - AluY SINE Alu 0 311 1 959 302 89 37 chr12 35030532 35031188 -108755267 + L2 LINE L2 2435 3145 -127 1883 170 6 6 chr12 35031188 35031500 -108754955 - AluSx SINE Alu 0 312 1 959 302 89 37 chr12 35031500 35031636 -108754819 + L2 LINE L2 3145 3272 0 21 0 0 0 chr12 35031695 35031716 -108754739 + AT_rich Low_complexity Low_complexity 1 21 0 2099 130 0 13 chr12 35032074 35032389 -108754066 + AluY SINE Alu 1 311 0 2271 96 3 20 chr12 35032590 35032891 -108753564 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 35033281 35033303 -108753152 + AT_rich Low_complexity Low_complexity 1 22 0 2234 103 3 0 chr12 35033856 35034147 -108752308 - AluSp SINE Alu -1 312 21 2187 87 7 0 chr12 35034680 35034966 -108751489 - AluSg SINE Alu -22 288 1 2330 250 85 48 chr12 35036205 35036892 -108749563 - MER21B LTR ERV1 -66 865 40 2408 75 0 3 chr12 35036937 35037229 -108749226 - AluY SINE Alu -20 291 1 1969 128 7 14 chr12 35037446 35037743 -108748712 + AluSx SINE Alu 1 295 -17 1885 146 7 7 chr12 35037751 35038046 -108748409 + AluJb SINE Alu 1 295 -17 821 202 22 34 chr12 35038178 35038356 -108748099 - MER5B DNA MER1_type -2 176 1 189 276 35 0 chr12 35038628 35038686 -108747769 - MIR SINE MIR -150 112 53 1019 204 85 0 chr12 35038735 35038936 -108747519 - MER58A DNA MER1_type -6 218 1 721 147 15 44 chr12 35039526 35039662 -108746793 - FLAM_A SINE Alu 0 133 2 1629 173 0 8 chr12 35040457 35040717 -108745738 + AluJo SINE Alu 1 258 -54 340 236 7 76 chr12 35040787 35040931 -108745524 + MIR SINE MIR 129 262 0 2181 108 7 0 chr12 35041020 35041307 -108745148 - AluSq SINE Alu -24 289 1 347 232 36 54 chr12 35042373 35042485 -108743970 + MER103 DNA DNA 8 117 -49 210 372 58 0 chr12 35043395 35043481 -108742974 + L2 LINE L2 3143 3233 -39 1955 143 7 10 chr12 35043697 35043997 -108742458 + AluJb SINE Alu 9 307 -5 427 278 52 63 chr12 35044659 35044850 -108741605 - MIR SINE MIR -27 235 47 2152 100 0 67 chr12 35045553 35045883 -108740572 - AluSx SINE Alu -4 308 1 2368 65 7 52 chr12 35046086 35046395 -108740060 - AluSp SINE Alu -18 295 1 1377 183 95 4 chr12 35047125 35047387 -108739068 + AluJb SINE Alu 2 287 -25 1769 273 89 27 chr12 35047763 35048790 -108737665 - L2 LINE L2 0 3313 2210 2556 57 3 0 chr12 35048871 35049171 -108737284 - AluY SINE Alu -10 301 1 1350 199 63 22 chr12 35049171 35049442 -108737013 - AluJo SINE Alu -30 282 1 1426 150 156 13 chr12 35049563 35049877 -108736578 - L1MB3 LINE L1 -3 6180 5822 1221 96 0 6 chr12 35049877 35050033 -108736422 + AluSq SINE Alu 2 156 -157 337 143 0 0 chr12 35050036 35050085 -108736370 - Alu SINE Alu -254 49 1 396 119 0 17 chr12 35050085 35050144 -108736311 - L1MB3 LINE L1 -445 5738 5681 2058 144 0 0 chr12 35050154 35050453 -108736002 - AluSx SINE Alu -12 300 2 27 73 0 0 chr12 35050508 35050563 -108735892 + AT_rich Low_complexity Low_complexity 1 55 0 2294 92 0 7 chr12 35051248 35051540 -108734915 - AluSc SINE Alu -19 290 1 1576 142 114 4 chr12 35051765 35052046 -108734409 - AluJb SINE Alu 0 312 1 288 236 22 56 chr12 35052072 35052161 -108734294 + MER2 DNA MER2_type 2 87 -258 1923 169 0 3 chr12 35052431 35052727 -108733728 - AluJb SINE Alu -17 295 1 1617 72 0 0 chr12 35053633 35053828 -108732627 + AluSc SINE Alu 113 307 -2 2027 132 17 0 chr12 35054282 35054570 -108731885 - AluSx SINE Alu -19 293 1 32 26 0 0 chr12 35054583 35054622 -108731833 + AT_rich Low_complexity Low_complexity 1 39 0 2380 97 0 10 chr12 35054899 35055208 -108731247 - AluSg SINE Alu -4 306 1 1023 125 0 7 chr12 35055495 35055647 -108730808 + AluSg/x SINE Alu 146 296 -13 2107 118 13 0 chr12 35055657 35055961 -108730494 + AluSq SINE Alu 1 308 -5 188 276 35 35 chr12 35056050 35056137 -108730318 - MIR SINE MIR 0 262 176 2027 112 25 0 chr12 35056464 35056783 -108729672 - AluSx SINE Alu 0 326 1 1055 130 25 45 chr12 35057189 35057389 -108729066 + MER20 DNA MER1_type 24 219 0 2438 80 0 0 chr12 35057875 35058174 -108728281 - AluSx SINE Alu -13 299 1 2521 72 3 0 chr12 35058963 35059267 -108727188 + AluSg SINE Alu 1 305 -5 227 300 55 45 chr12 35059799 35059909 -108726546 - MIR SINE MIR -129 133 23 2072 97 41 0 chr12 35059967 35060273 -108726182 - AluSc SINE Alu 0 317 1 369 0 0 0 chr12 35060350 35060391 -108726064 + (TA)n Simple_repeat Simple_repeat 2 42 0 1828 183 0 3 chr12 35060391 35060686 -108725769 - AluJo SINE Alu -18 294 1 2307 87 17 0 chr12 35060736 35061035 -108725420 - AluSx SINE Alu -8 304 1 2020 118 47 0 chr12 35061596 35061892 -108724563 - AluSx SINE Alu 0 312 3 2187 112 0 14 chr12 35061895 35062219 -108724236 - AluSq SINE Alu 0 313 1 384 308 5 76 chr12 35062284 35062469 -108723986 + MIR3 SINE MIR 29 200 -8 270 160 0 0 chr12 35062535 35062585 -108723870 + (TG)n Simple_repeat Simple_repeat 2 51 0 232 214 18 0 chr12 35062585 35062641 -108723814 + (TA)n Simple_repeat Simple_repeat 1 57 0 3057 121 111 44 chr12 35062824 35063067 -108723388 - MER51A LTR ERV1 0 634 409 1550 98 61 138 chr12 35063067 35063394 -108723061 + AluSg SINE Alu 1 302 -8 3057 121 111 44 chr12 35063394 35063744 -108722711 - MER51A LTR ERV1 -225 409 1 304 294 61 28 chr12 35063988 35064168 -108722287 + L1MC4a LINE L1 5180 5365 -781 1725 154 29 29 chr12 35064170 35064482 -108721973 + AluJb SINE Alu 1 312 0 2515 53 0 3 chr12 35064626 35064926 -108721529 - AluY SINE Alu -12 299 1 991 279 56 24 chr12 35064943 35065369 -108721086 + L1MC4a LINE L1 5445 5884 -1924 939 152 87 159 chr12 35065563 35065736 -108720719 + MLT1C LTR MaLR 1 185 -282 2581 58 0 10 chr12 35065736 35066047 -108720408 + AluY SINE Alu 1 308 -3 939 152 87 159 chr12 35066047 35066087 -108720368 + MLT1C LTR MaLR 185 226 -241 2127 112 7 7 chr12 35066087 35066372 -108720083 + AluSq SINE Alu 1 285 -28 438 20 0 0 chr12 35066372 35066423 -108720032 + (CA)n Simple_repeat Simple_repeat 2 52 0 939 152 87 159 chr12 35066423 35066554 -108719901 + MLT1C LTR MaLR 224 341 -126 1237 222 135 49 chr12 35066574 35067064 -108719391 - LTR10B LTR ERV1 -3 544 13 785 152 8 8 chr12 35067084 35067216 -108719239 + MLT1C LTR MaLR 336 467 0 1831 136 11 0 chr12 35067263 35067535 -108718920 - AluSx SINE Alu -37 275 1 1973 115 21 11 chr12 35068124 35068251 -108718204 + AluSx SINE Alu 2 126 -186 2276 90 0 34 chr12 35068251 35068573 -108717882 + AluSp SINE Alu 1 311 -2 1973 115 21 11 chr12 35068573 35068732 -108717723 + AluSx SINE Alu 126 291 -21 22 0 0 0 chr12 35068732 35068754 -108717701 + AT_rich Low_complexity Low_complexity 1 22 0 2089 109 46 0 chr12 35069823 35070108 -108716347 + AluSx SINE Alu 2 299 -13 288 237 316 7 chr12 35070134 35070286 -108716169 + MIR SINE MIR 58 256 -6 2467 78 0 0 chr12 35070410 35070705 -108715750 + AluY SINE Alu 1 295 -16 195 42 0 0 chr12 35070705 35070729 -108715726 + (TA)n Simple_repeat Simple_repeat 2 25 0 1828 207 66 28 chr12 35070971 35071371 -108715084 + MLT1D LTR MaLR 19 441 -64 2378 84 0 0 chr12 35071371 35071667 -108714788 - AluY SINE Alu -15 296 1 1828 207 66 28 chr12 35071667 35071735 -108714720 + MLT1D LTR MaLR 441 505 0 2121 120 0 0 chr12 35071956 35072247 -108714208 - AluSx SINE Alu -19 293 3 2307 104 0 0 chr12 35072365 35072674 -108713781 - AluY SINE Alu -2 309 1 2346 74 10 16 chr12 35072872 35073183 -108713272 - AluSq SINE Alu -4 309 1 2522 79 0 0 chr12 35073184 35073488 -108712967 - AluSp SINE Alu -9 304 1 192 233 23 0 chr12 35073751 35073794 -108712661 - L2 LINE L2 0 3313 3270 280 224 52 0 chr12 35073846 35073904 -108712551 - MER91 DNA MER1_type -78 62 2 1712 173 0 40 chr12 35073998 35074321 -108712134 - AluJb SINE Alu 0 312 3 1094 74 7 0 chr12 35074322 35074457 -108711998 - AluSp SINE Alu -177 136 1 2070 107 0 36 chr12 35074594 35074902 -108711553 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr12 35075084 35075107 -108711348 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 710 123 113 0 chr12 35075109 35075215 -108711240 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr12 35075227 35075250 -108711205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2259 60 0 0 chr12 35075444 35075750 -108710705 + AluY SINE Alu 15 320 0 192 40 0 0 chr12 35077345 35077370 -108709085 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1212 165 9 24 chr12 35078146 35078358 -108708097 + AluJb SINE Alu 47 255 -57 825 114 78 78 chr12 35078679 35078846 -108707609 + FRAM SINE Alu 1 161 -15 421 285 116 35 chr12 35078927 35078969 -108707486 - MER5A DNA MER1_type 0 189 152 2273 95 3 0 chr12 35078969 35079263 -108707192 - AluSp SINE Alu -18 295 1 421 285 116 35 chr12 35079263 35079392 -108707063 - MER5A DNA MER1_type -37 152 4 216 213 16 49 chr12 35079861 35079922 -108706533 - L3 LINE CR1 -19 1558 1500 1703 151 55 17 chr12 35080058 35080349 -108706106 - AluJo SINE Alu -10 302 1 2346 116 0 0 chr12 35080364 35080674 -108705781 - AluSg SINE Alu 0 310 1 902 137 38 0 chr12 35080674 35080805 -108705650 - AluSq/x SINE Alu -176 136 1 757 191 64 49 chr12 35080842 35081046 -108705409 - L1MB7 LINE L1 -1 6183 5977 2006 148 88 96 chr12 35081185 35081306 -108705149 - L1MB7 LINE L1 -202 5982 5862 1988 117 42 11 chr12 35081306 35081589 -108704866 - AluSx SINE Alu -9 303 12 2006 148 88 96 chr12 35081589 35081773 -108704682 - L1MB7 LINE L1 -322 5862 5678 2397 61 10 0 chr12 35081773 35082067 -108704388 - AluY SINE Alu -14 297 1 2006 148 88 96 chr12 35082067 35082190 -108704265 - L1MB7 LINE L1 -506 5678 5555 2035 129 0 7 chr12 35082190 35082493 -108703962 - AluSx SINE Alu -11 301 1 2006 148 88 96 chr12 35082493 35082575 -108703880 - L1MB7 LINE L1 -629 5555 5474 642 159 88 23 chr12 35082840 35082876 -108703579 - L1MB5 LINE L1 -6 6168 6136 2422 83 13 0 chr12 35082876 35083177 -108703278 - AluSp SINE Alu -8 305 1 642 159 88 23 chr12 35083177 35083728 -108702727 - L1MB5 LINE L1 -38 6136 5372 888 121 0 57 chr12 35083770 35083911 -108702544 - FLAM_C SINE Alu 0 133 1 1920 210 80 68 chr12 35083911 35084275 -108702180 - L1MB5 LINE L1 -941 5205 4847 1919 144 0 23 chr12 35084275 35084580 -108701875 - AluSx SINE Alu -14 298 1 1920 210 80 68 chr12 35084580 35084748 -108701707 - L1MB5 LINE L1 -1299 4847 4660 1818 146 4 4 chr12 35084748 35085048 -108701407 - AluSx SINE Alu 0 307 8 1920 210 80 68 chr12 35085048 35085175 -108701280 - L1MB5 LINE L1 -1486 4660 4536 455 98 37 73 chr12 35085261 35085343 -108701112 - MER41B LTR ERV1 -91 544 466 818 144 53 48 chr12 35085357 35085545 -108700910 - L1M4c LINE L1 -4850 1534 1346 961 194 12 6 chr12 35085747 35085917 -108700538 + FAM SINE Alu 1 171 -4 1980 113 33 0 chr12 35086023 35086318 -108700137 - AluSp SINE Alu 0 305 2 269 0 0 0 chr12 35086415 35086450 -108700005 + L1MD3 LINE L1 7950 7984 -11 793 264 98 62 chr12 35087047 35087403 -108699052 + Charlie8 DNA MER1_type 29 397 -2020 516 276 96 15 chr12 35087406 35087605 -108698850 + MIR SINE MIR 48 262 0 2377 140 44 31 chr12 35087820 35088081 -108698374 - MLT1B LTR MaLR 0 390 121 2337 68 0 20 chr12 35088081 35088373 -108698082 - AluSc SINE Alu -23 286 1 2377 140 44 31 chr12 35088373 35088496 -108697959 - MLT1B LTR MaLR -269 121 1 229 210 99 127 chr12 35088727 35088908 -108697547 + HAL1b LINE L1 309 484 -864 27 0 0 0 chr12 35088976 35089003 -108697452 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr12 35089156 35089179 -108697276 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 592 279 209 21 chr12 35089697 35090210 -108696245 - L1ME3 LINE L1 -300 5862 5254 1522 170 20 98 chr12 35090351 35090464 -108695991 - L1MB8 LINE L1 0 6178 6058 1926 157 0 3 chr12 35090464 35090769 -108695686 - AluJb SINE Alu -8 304 1 1522 170 20 98 chr12 35090769 35090919 -108695536 - L1MB8 LINE L1 -120 6058 5956 2212 95 0 7 chr12 35090919 35091214 -108695241 - AluSg SINE Alu -17 293 1 1522 170 20 98 chr12 35091214 35091355 -108695100 - L1MB8 LINE L1 -222 5956 5805 1857 148 0 7 chr12 35092318 35092601 -108693854 + AluJb SINE Alu 1 281 -31 299 291 33 88 chr12 35092661 35093084 -108693371 + HAL1b LINE L1 8 407 -941 1629 157 6 63 chr12 35093084 35093200 -108693255 + AluJo SINE Alu 1 122 -190 390 21 0 0 chr12 35093200 35093247 -108693208 + (CA)n Simple_repeat Simple_repeat 2 48 0 1629 157 6 63 chr12 35093247 35093449 -108693006 + AluJo SINE Alu 122 301 -11 896 119 30 0 chr12 35093465 35093599 -108692856 - AluSp/q SINE Alu -19 294 157 1837 123 8 4 chr12 35094575 35094836 -108691619 - AluSx SINE Alu -10 302 41 227 154 15 0 chr12 35095014 35095079 -108691376 + (TG)n Simple_repeat Simple_repeat 2 67 0 254 188 72 14 chr12 35095080 35095218 -108691237 + (TTGG)n Simple_repeat Simple_repeat 3 148 0 * 408 169 16 60 chr12 35095123 35095306 -108691149 + (TTTG)n Simple_repeat Simple_repeat 4 178 0 534 197 16 31 chr12 35095415 35095542 -108690913 - AluY SINE Alu -185 126 2 632 131 35 162 chr12 35095760 35095867 -108690588 + L1MB4 LINE L1 5862 5934 -246 1868 128 24 35 chr12 35095867 35096156 -108690299 + AluSq SINE Alu 1 286 -27 632 131 35 162 chr12 35096156 35096246 -108690209 + L1MB4 LINE L1 5934 6034 -146 2251 91 7 3 chr12 35096246 35096532 -108689923 + AluSg SINE Alu 1 287 -23 1980 100 0 36 chr12 35096536 35096817 -108689638 + AluSc SINE Alu 1 271 -38 1919 91 0 0 chr12 35097039 35097280 -108689175 + AluSg/x SINE Alu 69 309 -1 432 290 98 27 chr12 35099010 35099193 -108687262 + LTR33 LTR ERVL 12 207 -314 694 214 31 36 chr12 35099245 35099441 -108687014 + LTR33 LTR ERVL 327 521 0 880 197 25 102 chr12 35099669 35099715 -108686740 + L1MC4 LINE L1 7741 7789 -253 984 155 0 31 chr12 35099715 35099876 -108686579 + FRAM SINE Alu 5 160 -6 880 197 25 102 chr12 35099876 35100175 -108686280 + L1MC4 LINE L1 7789 8042 0 538 318 109 49 chr12 35100219 35100390 -108686065 + L1MC4a LINE L1 5307 5466 -655 1993 96 7 11 chr12 35100390 35100660 -108685795 + AluSx SINE Alu 37 305 -7 538 318 109 49 chr12 35100660 35100967 -108685488 + L1MC4a LINE L1 5466 5706 -415 2207 78 4 0 chr12 35100967 35101235 -108685220 - AluSx SINE Alu -18 294 26 538 318 109 49 chr12 35101235 35101303 -108685152 + L1MC4a LINE L1 5706 5768 -353 1674 177 11 4 chr12 35101306 35101583 -108684872 + AluJb SINE Alu 1 279 -33 2487 61 7 3 chr12 35101835 35102132 -108684323 + AluSp SINE Alu 1 298 -15 694 114 0 19 chr12 35102564 35102669 -108683786 - AluSg/x SINE Alu -9 301 199 235 53 0 0 chr12 35102770 35102808 -108683647 + AluJb SINE Alu 262 299 0 2397 87 0 3 chr12 35103390 35103689 -108682766 + AluSc SINE Alu 1 298 -11 252 89 89 0 chr12 35103689 35103790 -108682665 + (TA)n Simple_repeat Simple_repeat 1 110 0 2132 113 7 0 chr12 35104706 35104998 -108681457 - AluSx SINE Alu -17 295 2 244 273 0 0 chr12 35105529 35105606 -108680849 + CT-rich Low_complexity Low_complexity 1 77 0 410 307 121 29 chr12 35106825 35107105 -108679350 - L1MC/D LINE L1 -2002 5806 5501 885 180 47 73 chr12 35107115 35107348 -108679107 - L1MD2 LINE L1 -15 6344 6118 2545 57 0 0 chr12 35107956 35108254 -108678201 + AluSx SINE Alu 1 298 -14 2193 103 23 10 chr12 35108689 35108990 -108677465 - AluSx SINE Alu -7 305 1 37 0 0 0 chr12 35109057 35109094 -108677361 + AT_rich Low_complexity Low_complexity 1 37 0 741 50 89 0 chr12 35109094 35109195 -108677260 - HY1 scRNA scRNA -2 110 1 23 0 0 0 chr12 35109745 35109768 -108676687 + AT_rich Low_complexity Low_complexity 1 23 0 1805 172 0 13 chr12 35111356 35111670 -108674785 + AluJb SINE Alu 1 310 -2 311 28 0 0 chr12 35112005 35112041 -108674414 - U2 snRNA snRNA -152 36 1 1447 124 4 26 chr12 35114105 35114338 -108672117 + AluJo SINE Alu 85 312 0 31 0 0 0 chr12 35114584 35114615 -108671840 + AT_rich Low_complexity Low_complexity 1 31 0 1951 226 78 115 chr12 35114793 35115305 -108671150 + L2 LINE L2 1951 2480 -833 1833 139 46 4 chr12 35115305 35115586 -108670869 + AluJo SINE Alu 6 298 -14 1951 226 78 115 chr12 35115586 35116149 -108670306 + L2 LINE L2 2480 3069 -244 1164 139 0 0 chr12 35116201 35116366 -108670089 + FRAM SINE Alu 11 175 -1 516 237 36 104 chr12 35116377 35116626 -108669829 + L2 LINE L2 3082 3313 0 21 36 0 0 chr12 35116777 35116805 -108669650 + AT_rich Low_complexity Low_complexity 1 28 0 654 228 31 0 chr12 35117386 35117513 -108668942 + FLAM_A SINE Alu 1 131 -2 2623 47 0 0 chr12 35117958 35118259 -108668196 - AluY SINE Alu -10 301 1 23 33 0 0 chr12 35118358 35118388 -108668067 + AT_rich Low_complexity Low_complexity 1 30 0 1516 162 13 45 chr12 35118391 35118699 -108667756 + AluJb SINE Alu 1 298 -14 932 184 6 18 chr12 35118780 35118943 -108667512 - FRAM SINE Alu -4 162 2 320 214 36 12 chr12 35118987 35119071 -108667384 + L1ME LINE L1 5698 5783 -338 627 76 36 53 chr12 35119300 35119699 -108666756 + (TA)n Simple_repeat Simple_repeat 1 392 0 2035 144 0 0 chr12 35119699 35119983 -108666472 - AluSx SINE Alu -27 285 2 1717 193 7 0 chr12 35120496 35120791 -108665664 - AluJo SINE Alu -15 297 1 338 296 125 17 chr12 35121266 35121442 -108665013 - MIR SINE MIR -15 247 53 259 307 55 49 chr12 35121484 35121647 -108664808 + MIR3 SINE MIR 32 195 -13 603 249 83 6 chr12 35121968 35122137 -108664318 + MIR SINE MIR 48 229 -33 4114 193 107 21 chr12 35123062 35123856 -108662599 - MER21B LTR ERV1 -1 862 1 62 52 0 0 chr12 35124378 35124475 -108661980 + AT_rich Low_complexity Low_complexity 1 97 0 705 186 0 0 chr12 35124577 35124679 -108661776 + FLAM_A SINE Alu 12 113 -29 2303 86 13 0 chr12 35124956 35125258 -108661197 + AluSx SINE Alu 1 306 -6 243 0 0 0 chr12 35125391 35125418 -108661037 + (T)n Simple_repeat Simple_repeat 1 27 0 843 164 113 19 chr12 35125893 35126052 -108660403 + AluJb SINE Alu 137 310 -2 2322 87 3 0 chr12 35126605 35126903 -108659552 - AluSg SINE Alu -11 299 1 28 0 0 0 chr12 35126903 35126931 -108659524 + AT_rich Low_complexity Low_complexity 1 28 0 1846 156 24 0 chr12 35127032 35127327 -108659128 - AluSx SINE Alu -2 310 9 390 108 14 54 chr12 35127327 35127401 -108659054 - L1MC2 LINE L1 -374 5970 5900 496 151 0 0 chr12 35127401 35127474 -108658981 - FLAM SINE Alu -10 133 61 914 172 178 44 chr12 35127474 35127622 -108658833 + L1MC4 LINE L1 6929 7056 -986 333 68 0 0 chr12 35127622 35127666 -108658789 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 914 172 178 44 chr12 35127666 35127837 -108658618 + L1MC4 LINE L1 7056 7291 -751 2117 118 3 7 chr12 35127845 35128141 -108658314 - AluSx SINE Alu -17 295 1 2543 121 105 5 chr12 35128141 35128589 -108657866 - L1MC2 LINE L1 -425 5908 5416 5228 184 86 76 chr12 35128603 35129062 -108657393 - L1MC4 LINE L1 -2 8040 7587 2109 101 28 0 chr12 35129062 35129349 -108657106 - AluSg SINE Alu -15 295 1 5228 184 86 76 chr12 35129349 35129384 -108657071 - L1MC4 LINE L1 -455 7587 7554 2362 87 10 0 chr12 35129384 35129682 -108656773 - AluY SINE Alu -10 301 1 5228 184 86 76 chr12 35129682 35129983 -108656472 - L1MC4 LINE L1 -488 7554 7257 2060 122 7 0 chr12 35129983 35130279 -108656176 + AluSx SINE Alu 1 298 -14 5228 184 86 76 chr12 35130279 35131036 -108655419 - L1MC4 LINE L1 -785 7257 6471 2033 162 43 28 chr12 35131037 35131581 -108654874 - MLT2A2 LTR ERVL 0 554 1 557 238 191 47 chr12 35131604 35131842 -108654613 - L1MC4a LINE L1 -1370 6438 6147 183 42 0 0 chr12 35131842 35131866 -108654589 + (TG)n Simple_repeat Simple_repeat 2 25 0 557 238 191 47 chr12 35131866 35131926 -108654529 - L1MC4a LINE L1 -1661 6147 6097 1704 152 0 18 chr12 35131966 35132249 -108654206 - AluJo SINE Alu 0 312 35 2462 73 0 13 chr12 35132952 35133267 -108653188 - AluY SINE Alu 0 311 1 620 130 87 17 chr12 35133267 35133382 -108653073 - AluJo SINE Alu -176 136 14 246 133 0 0 chr12 35133484 35133529 -108652926 - Alu SINE Alu 0 302 258 696 186 8 16 chr12 35133529 35133658 -108652797 + AluJb SINE Alu 179 306 -6 2310 104 0 0 chr12 35133662 35133960 -108652495 + AluSc SINE Alu 1 298 -11 225 282 161 16 chr12 35133979 35134103 -108652352 - L2 LINE L2 -1107 2207 2066 822 153 0 22 chr12 35134130 35134267 -108652188 + AluJo SINE Alu 1 134 -178 1684 236 299 7 chr12 35134267 35135101 -108651354 - L2 LINE L2 -1262 2052 976 2076 118 3 45 chr12 35135124 35135438 -108651017 - AluSq SINE Alu -12 301 1 195 247 148 12 chr12 35135458 35135539 -108650916 + MIR SINE MIR 161 252 -10 371 267 57 80 chr12 35135543 35135719 -108650736 + MER5B DNA MER1_type 1 172 -6 284 214 366 0 chr12 35135919 35136031 -108650424 + MER5A DNA MER1_type 31 183 -6 2353 95 0 0 chr12 35136460 35136756 -108649699 - AluY SINE Alu -15 296 1 848 170 44 159 chr12 35136800 35137070 -108649385 - MER8 DNA MER2_type 0 239 1 1888 92 115 0 chr12 35137673 35137934 -108648521 - AluSg SINE Alu -19 291 1 955 90 8 0 chr12 35137962 35138084 -108648371 - AluSq/x SINE Alu -189 123 1 22 0 0 0 chr12 35139840 35139862 -108646593 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 35142219 35142241 -108644214 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 35142267 35142296 -108644159 + AT_rich Low_complexity Low_complexity 1 29 0 198 233 67 0 chr12 35143305 35143365 -108643090 + L2 LINE L2 3207 3270 -2 2197 117 0 0 chr12 35143977 35144268 -108642187 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 35144277 35144302 -108642153 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 713 182 177 0 chr12 35144996 35145188 -108641267 - MIR SINE MIR -14 248 23 1030 135 153 0 chr12 35145189 35145359 -108641096 - AluJo SINE Alu -114 198 3 2164 126 37 50 chr12 35145503 35145809 -108640646 + THE1C LTR MaLR 1 305 -70 2281 92 0 0 chr12 35145809 35146126 -108640329 - AluY SINE Alu 0 317 1 2164 126 37 50 chr12 35146126 35146197 -108640258 + THE1C LTR MaLR 305 375 0 2029 127 0 56 chr12 35146252 35146576 -108639879 + AluSx SINE Alu 1 306 -6 401 186 106 35 chr12 35146683 35146796 -108639659 + MER5C DNA MER1_type 2 122 -202 260 212 152 0 chr12 35146825 35146891 -108639564 + MER5C DNA MER1_type 234 309 -15 2122 98 17 7 chr12 35146892 35147187 -108639268 - AluSq SINE Alu -15 298 1 1390 238 63 19 chr12 35147211 35147396 -108639059 + MER58D DNA MER1_type 5 180 -2240 2247 86 4 0 chr12 35147396 35147708 -108638747 - AluSg SINE Alu 0 313 1 1390 238 63 19 chr12 35147708 35147887 -108638568 + MER58D DNA MER1_type 180 386 0 2291 96 3 0 chr12 35148441 35148732 -108637723 - AluSc SINE Alu -17 292 1 1775 99 130 0 chr12 35149462 35149715 -108636740 + AluSx SINE Alu 5 290 -12 312 325 43 70 chr12 35150216 35150545 -108635910 + L2 LINE L2 2366 2685 -629 823 202 76 15 chr12 35150545 35150769 -108635686 + AluJo SINE Alu 101 336 0 240 278 162 73 chr12 35150786 35151176 -108635279 + L2 LINE L2 2725 3187 -85 2256 103 0 3 chr12 35151637 35151937 -108634518 + AluSg SINE Alu 1 299 -11 205 364 73 18 chr12 35152107 35152217 -108634238 + L2 LINE L2 2750 2865 -449 1877 137 0 45 chr12 35152438 35152612 -108633843 - AluJb SINE Alu -12 300 145 2205 101 7 10 chr12 35152612 35152908 -108633547 - AluSc SINE Alu -14 295 1 1877 137 0 45 chr12 35152908 35153047 -108633408 - AluJb SINE Alu -167 145 1 428 278 164 23 chr12 35153468 35153864 -108632591 + L1MEd LINE L1 675 1126 -4993 298 304 56 8 chr12 35154033 35154158 -108632297 + MIR SINE MIR 105 235 -27 769 318 132 68 chr12 35154636 35154756 -108631699 + L2 LINE L2 90 201 -3112 1966 98 58 0 chr12 35154756 35155032 -108631423 - AluSp SINE Alu -21 292 1 769 318 132 68 chr12 35155032 35156095 -108630360 + L2 LINE L2 201 1195 -2118 2305 100 0 3 chr12 35156095 35156395 -108630060 + AluSg SINE Alu 1 299 -11 2455 75 3 0 chr12 35156402 35156710 -108629745 + AluSp SINE Alu 1 309 -4 769 318 132 68 chr12 35156710 35157083 -108629372 + L2 LINE L2 1200 1548 -1765 2340 93 10 0 chr12 35157083 35157384 -108629071 - AluSq SINE Alu -9 304 1 769 318 132 68 chr12 35157384 35157671 -108628784 + L2 LINE L2 1548 3307 -6 2121 118 3 0 chr12 35157999 35158288 -108628167 + AluSx SINE Alu 23 312 0 1837 161 16 10 chr12 35158773 35159078 -108627377 + AluJo SINE Alu 1 307 -5 34 0 0 0 chr12 35160171 35160205 -108626250 + AT_rich Low_complexity Low_complexity 1 34 0 2177 107 3 3 chr12 35160654 35160943 -108625512 + AluSq SINE Alu 1 289 -24 2085 132 10 0 chr12 35161362 35161657 -108624798 + AluSx SINE Alu 1 298 -14 364 120 0 0 chr12 35162232 35162305 -108624150 - Alu SINE Alu 0 308 236 1018 141 0 7 chr12 35162305 35162454 -108624001 - AluSq/x SINE Alu -165 148 1 2052 64 131 0 chr12 35162584 35162851 -108623604 + AluSx SINE Alu 1 302 0 982 192 0 6 chr12 35162856 35163023 -108623432 + FRAM SINE Alu 1 166 0 230 410 20 0 chr12 35163442 35163542 -108622913 - L2 LINE L2 -19 3253 3152 2393 71 0 14 chr12 35163905 35164199 -108622256 - AluY SINE Alu -21 290 1 21 57 0 0 chr12 35164371 35164406 -108622049 + AT_rich Low_complexity Low_complexity 1 35 0 1445 197 99 38 chr12 35166042 35166407 -108620048 + MSTD LTR MaLR 1 387 -9 1784 182 115 3 chr12 35167159 35167550 -108618905 + MER74A LTR ERVL 1 435 -123 2380 185 90 8 chr12 35167755 35168286 -108618169 - L1MB7 LINE L1 0 6184 5610 8439 117 30 14 chr12 35168313 35169432 -108617023 - HSMAR2 DNA Mariner 0 1302 158 1677 155 19 62 chr12 35169432 35169754 -108616701 - AluJo SINE Alu -4 308 1 8439 117 30 14 chr12 35169754 35169915 -108616540 - HSMAR2 DNA Mariner -1144 158 1 1917 194 17 3 chr12 35170646 35170997 -108615458 - MER52A LTR ERV1 0 1755 1400 1456 198 23 0 chr12 35170967 35171310 -108615145 - MER52A LTR ERV1 -1099 656 247 * 352 221 0 0 chr12 35171310 35171378 -108615077 - MER52A LTR ERV1 -1683 72 5 1785 121 98 8 chr12 35171560 35171825 -108614630 - AluSx SINE Alu -23 289 1 368 279 109 20 chr12 35172870 35173017 -108613438 - MIR SINE MIR -75 187 28 1431 115 217 12 chr12 35173995 35174271 -108612184 + AluSx SINE Alu 1 302 0 2015 121 23 16 chr12 35175345 35175652 -108610803 + AluSx SINE Alu 1 309 -3 182 340 19 0 chr12 35175652 35175705 -108610750 + MER5A DNA MER1_type 68 121 -68 793 185 99 0 chr12 35175719 35175870 -108610585 - AluSg/x SINE Alu -12 298 133 26 50 0 0 chr12 35176949 35176989 -108609466 + AT_rich Low_complexity Low_complexity 1 40 0 351 271 51 33 chr12 35177025 35177177 -108609278 - MIR SINE MIR -66 142 11 272 284 0 0 chr12 35177272 35177339 -108609116 - MIR SINE MIR -7 255 189 2184 142 0 0 chr12 35177920 35178222 -108608233 + AluSx SINE Alu 1 302 -10 303 304 44 19 chr12 35178240 35178398 -108608057 + L1M4 LINE L1 77 238 -6304 490 194 47 0 chr12 35178584 35178713 -108607742 + L1M4 LINE L1 1423 1557 -5077 411 195 0 0 chr12 35178722 35178799 -108607656 + FLAM_A SINE Alu 53 129 -13 1081 230 17 34 chr12 35178806 35179152 -108607303 + L1M4 LINE L1 1513 1852 -4794 1664 157 66 11 chr12 35179172 35179458 -108606997 + AluJo SINE Alu 1 302 -10 2279 74 16 19 chr12 35179473 35179782 -108606673 + AluY SINE Alu 1 308 -3 259 314 55 24 chr12 35179995 35180285 -108606170 + L1M4 LINE L1 2311 2609 -4216 2039 111 3 30 chr12 35181034 35181332 -108605123 - AluJb SINE Alu -21 291 2 296 250 0 0 chr12 35181927 35181987 -108604468 + L2 LINE L2 3212 3271 -1 186 343 61 30 chr12 35182045 35182144 -108604311 + MIR SINE MIR 19 120 -88 264 170 0 0 chr12 35182551 35182604 -108603851 + A-rich Low_complexity Low_complexity 1 53 0 1991 112 3 7 chr12 35183313 35183599 -108602856 + AluSg SINE Alu 3 287 -23 2425 17 11 3 chr12 35183699 35183986 -108602469 - AluY SINE Alu -22 289 1 212 342 63 0 chr12 35184084 35184163 -108602292 - L2 LINE L2 0 3272 3189 37 0 0 0 chr12 35185068 35185105 -108601350 + AT_rich Low_complexity Low_complexity 1 37 0 840 167 79 3 chr12 35185105 35185322 -108601133 + AluJb SINE Alu 1 301 -11 388 252 8 16 chr12 35185329 35185456 -108600999 - L1MC5 LINE L1 -65 7896 7771 323 254 44 53 chr12 35185524 35185638 -108600817 + L2 LINE L2 3201 3313 0 2414 91 3 0 chr12 35186238 35186545 -108599910 - AluSp SINE Alu -5 308 1 228 221 162 0 chr12 35187811 35187879 -108598576 + MLT1L LTR MaLR 537 615 0 2204 108 0 3 chr12 35188152 35188449 -108598006 - AluSg SINE Alu -14 296 1 926 208 118 47 chr12 35188475 35188561 -108597894 - L1ME1 LINE L1 -9 6157 6079 3419 120 7 35 chr12 35188561 35189103 -108597352 - MER1A DNA MER1_type 0 527 1 926 208 118 47 chr12 35189103 35189338 -108597117 - L1ME1 LINE L1 -87 6079 5813 579 218 76 91 chr12 35189933 35190130 -108596325 - MIR SINE MIR 0 262 69 23 0 0 0 chr12 35190314 35190337 -108596118 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 35190806 35190834 -108595621 + AT_rich Low_complexity Low_complexity 1 28 0 1312 126 6 0 chr12 35190917 35191120 -108595335 + AluSg/x SINE Alu 103 306 0 883 239 45 1 chr12 35192401 35192640 -108593815 - MIR SINE MIR -7 255 4 2332 95 0 7 chr12 35192866 35193170 -108593285 - AluSq SINE Alu -10 303 2 339 135 19 0 chr12 35193352 35193404 -108593051 - AluSg/x SINE Alu -51 249 197 180 200 0 107 chr12 35193468 35193543 -108592912 - MIR SINE MIR -129 133 67 1066 204 40 13 chr12 35194022 35194248 -108592207 - MIR SINE MIR -24 238 7 200 246 29 87 chr12 35194974 35195043 -108591412 - MIR SINE MIR -121 87 23 273 283 152 86 chr12 35195187 35195456 -108590999 + L2 LINE L2 2124 2410 -904 1951 117 17 33 chr12 35195511 35195834 -108590621 + AluJb SINE Alu 1 312 0 380 274 11 21 chr12 35195870 35195965 -108590490 - MIR SINE MIR -157 105 12 2197 118 10 0 chr12 35195984 35196288 -108590167 - AluSx SINE Alu -5 307 1 196 292 92 60 chr12 35196469 35196654 -108589801 + L2 LINE L2 2544 2734 -580 181 303 157 11 chr12 35197307 35197336 -108589119 + L2 LINE L2 3072 3095 -218 1930 156 7 3 chr12 35197336 35197643 -108588812 - AluJo SINE Alu -4 308 1 181 303 157 11 chr12 35197643 35197791 -108588664 + L2 LINE L2 3095 3275 -38 348 24 0 0 chr12 35197933 35197974 -108588481 + (TA)n Simple_repeat Simple_repeat 2 42 0 342 0 0 0 chr12 35198596 35198634 -108587821 + (TA)n Simple_repeat Simple_repeat 1 38 0 1728 145 25 11 chr12 35198637 35198920 -108587535 - AluJb SINE Alu -25 287 1 253 379 14 0 chr12 35199321 35199429 -108587026 - MIR SINE MIR -105 103 7 267 83 42 0 chr12 35199453 35199501 -108586954 - L1MB3 LINE L1 0 6183 6134 185 267 57 95 chr12 35200427 35200500 -108585955 + MIR3 SINE MIR 84 153 -55 1752 195 0 0 chr12 35200500 35200802 -108585653 - AluJb SINE Alu -10 302 1 185 267 57 95 chr12 35200802 35200833 -108585622 + MIR3 SINE MIR 153 184 -24 26 30 0 0 chr12 35202151 35202184 -108584271 + AT_rich Low_complexity Low_complexity 1 33 0 612 298 184 20 chr12 35202420 35202879 -108583576 + L2 LINE L2 2613 3150 -163 2686 30 0 0 chr12 35202952 35203251 -108583204 - AluY SINE Alu -12 299 1 304 305 95 29 chr12 35203368 35203473 -108582982 + L2 LINE L2 3200 3311 -2 445 289 121 29 chr12 35203501 35203740 -108582715 - MIR SINE MIR 0 262 2 2369 79 13 3 chr12 35204513 35204816 -108581639 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr12 35205482 35205506 -108580949 + AT_rich Low_complexity Low_complexity 1 24 0 230 311 100 0 chr12 35206845 35206935 -108579520 - MIR SINE MIR -87 175 77 2226 181 26 14 chr12 35206935 35207360 -108579095 + MSTB1 LTR MaLR 1 430 -2 217 343 20 30 chr12 35208586 35208685 -108577770 + L2 LINE L2 3179 3276 -37 2380 52 3 3 chr12 35209149 35209440 -108577015 + AluY SINE Alu 1 291 -20 317 181 28 14 chr12 35209630 35209702 -108576753 + MER34 LTR ERV1 442 514 -28 198 103 0 0 chr12 35210424 35210453 -108576002 + (TG)n Simple_repeat Simple_repeat 2 30 0 786 186 7 14 chr12 35210479 35210624 -108575831 - FRAM SINE Alu -33 143 1 2213 129 0 0 chr12 35211069 35211371 -108575084 - AluSx SINE Alu -10 302 1 2013 100 4 0 chr12 35211808 35212069 -108574386 + AluSx SINE Alu 6 267 -45 1938 214 152 7 chr12 35212202 35212750 -108573705 + L1ME1 LINE L1 5505 6131 -35 1683 163 57 0 chr12 35212751 35213034 -108573421 - AluJb SINE Alu -11 301 3 326 31 0 62 chr12 35213118 35213182 -108573273 + (TA)n Simple_repeat Simple_repeat 1 60 0 798 244 121 4 chr12 35213187 35213438 -108573017 - L1ME LINE L1 -375 5789 5508 372 116 35 0 chr12 35213475 35213561 -108572894 + (TA)n Simple_repeat Simple_repeat 1 89 0 2273 98 0 3 chr12 35213694 35213991 -108572464 + AluSc SINE Alu 1 296 -13 215 276 58 58 chr12 35214442 35214529 -108571926 - MIR3 SINE MIR -5 203 117 261 306 224 8 chr12 35214561 35214695 -108571760 - MIR SINE MIR -94 168 6 479 367 78 45 chr12 35215344 35215742 -108570713 - L2 LINE L2 0 3272 2862 1052 100 0 7 chr12 35215748 35215888 -108570567 - AluSq/x SINE Alu -173 139 1 404 214 51 101 chr12 35216713 35216800 -108569655 - LTR16A LTR ERVL -222 228 153 2144 114 3 0 chr12 35216800 35217098 -108569357 - AluSx SINE Alu -9 303 5 404 214 51 101 chr12 35217098 35217188 -108569267 - LTR16A LTR ERVL -297 153 60 905 233 15 15 chr12 35217236 35217507 -108568948 + L1MA9 LINE L1 6006 6276 -36 245 293 93 0 chr12 35217774 35217924 -108568531 - L1ME3 LINE L1 -212 5950 5787 1228 96 46 67 chr12 35218165 35218404 -108568051 + MER50 LTR ERV1 1 234 -500 * 1485 168 3 14 chr12 35218402 35218687 -108567768 + MER50 LTR ERV1 433 714 -20 195 42 0 0 chr12 35219702 35219726 -108566729 + (TG)n Simple_repeat Simple_repeat 2 25 0 2319 97 0 0 chr12 35220684 35220993 -108565462 - AluY SINE Alu -2 309 1 2272 98 3 0 chr12 35221002 35221299 -108565156 - AluSx SINE Alu -14 298 1 693 52 21 0 chr12 35221476 35221573 -108564882 - L1PB1 LINE L1 0 6151 6053 2133 168 55 51 chr12 35222188 35222514 -108563941 - L1MA9 LINE L1 -6 6306 5983 2039 125 10 10 chr12 35222514 35222818 -108563637 - AluJb SINE Alu -8 304 1 1361 173 108 14 chr12 35222827 35223104 -108563351 - AluJo SINE Alu -9 303 1 2133 168 55 51 chr12 35223104 35223252 -108563203 - L1MA9 LINE L1 -336 5976 5806 286 42 42 0 chr12 35223252 35223300 -108563155 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2133 168 55 51 chr12 35223300 35223391 -108563064 - L1MA9 LINE L1 -506 5806 5717 2116 126 0 0 chr12 35223722 35224015 -108562440 - AluSx SINE Alu -17 295 3 447 279 153 51 chr12 35224061 35224434 -108562021 - MLT1J LTR MaLR -1 510 100 345 192 0 0 chr12 35224465 35224538 -108561917 - LTR30 LTR ERV1 -98 624 552 328 248 83 9 chr12 35224537 35224646 -108561809 - MLT1J LTR MaLR -394 117 1 * 243 296 291 11 chr12 35225255 35225434 -108561021 - MIR SINE MIR 0 262 34 419 300 200 13 chr12 35225918 35226218 -108560237 + MLT1L LTR MaLR 10 365 -250 1878 125 65 44 chr12 35226727 35227094 -108559361 - THE1C LTR MaLR 0 375 1 894 267 59 4 chr12 35227095 35227331 -108559124 - MIR SINE MIR -12 250 2 195 200 238 50 chr12 35227434 35227514 -108558941 + MIR SINE MIR 35 129 -133 2048 114 44 0 chr12 35227544 35227842 -108558613 + AluY SINE Alu 1 311 0 241 370 81 19 chr12 35227919 35228130 -108558325 - L3 LINE CR1 -219 1358 1135 281 268 0 0 chr12 35228476 35228532 -108557923 + L3 LINE CR1 1517 1572 -5 229 266 0 43 chr12 35228648 35228742 -108557713 - L1MC4 LINE L1 -1339 6703 6614 194 0 39 0 chr12 35230484 35230510 -108555945 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 207 319 97 14 chr12 35231647 35231719 -108554736 + L2 LINE L2 3149 3226 -46 2083 84 33 4 chr12 35231739 35232032 -108554423 + AluSc SINE Alu 1 301 0 2072 85 85 0 chr12 35232384 35232665 -108553790 - AluY SINE Alu -6 305 1 2218 139 0 0 chr12 35234148 35234451 -108552004 - AluSx SINE Alu -9 303 1 2339 60 0 54 chr12 35235155 35235469 -108550986 - AluY SINE Alu -14 297 1 369 283 52 24 chr12 35235587 35235799 -108550656 + L1MC4a LINE L1 5558 5775 -346 24 32 0 0 chr12 35235897 35235928 -108550527 + AT_rich Low_complexity Low_complexity 1 31 0 561 129 0 12 chr12 35235928 35236013 -108550442 + AluS SINE Alu 1 84 -228 337 242 53 30 chr12 35236113 35236245 -108550210 + L1ME1 LINE L1 1597 1731 -4665 2336 71 7 0 chr12 35236245 35236551 -108549904 + AluSp SINE Alu 1 308 0 1837 128 0 102 chr12 35236564 35236907 -108549548 + AluSx SINE Alu 3 310 -2 2108 235 60 80 chr12 35237433 35238184 -108548271 + L1ME1 LINE L1 3451 4215 -2020 336 48 0 0 chr12 35238184 35238226 -108548229 + (CA)n Simple_repeat Simple_repeat 2 43 0 2108 235 60 80 chr12 35238226 35238973 -108547482 + L1ME1 LINE L1 4215 4975 -1260 2307 118 0 0 chr12 35238973 35239277 -108547178 + AluSx SINE Alu 1 304 -8 1999 133 13 17 chr12 35239279 35239579 -108546876 + AluSx SINE Alu 1 299 -13 2108 235 60 80 chr12 35239579 35240151 -108546304 + L1ME1 LINE L1 4976 5466 -769 2045 152 7 0 chr12 35240151 35240460 -108545995 + AluJb SINE Alu 1 311 -1 2108 235 60 80 chr12 35240460 35240783 -108545672 + L1ME1 LINE L1 5466 5794 -441 694 218 24 97 chr12 35240795 35240926 -108545529 + L1ME1 LINE L1 5908 6006 -229 1935 151 3 3 chr12 35240926 35241224 -108545231 + AluJo SINE Alu 1 298 -14 694 218 24 97 chr12 35241224 35241390 -108545065 + L1ME1 LINE L1 6006 6183 -52 354 328 113 39 chr12 35241421 35241756 -108544699 + L1MC4a LINE L1 5771 6130 -1678 1576 100 9 18 chr12 35242140 35242360 -108544095 - AluSx SINE Alu -92 220 3 2164 132 0 3 chr12 35242364 35242667 -108543788 - AluSg SINE Alu -8 302 1 27 0 0 0 chr12 35242669 35242696 -108543759 + AT_rich Low_complexity Low_complexity 1 27 0 1717 133 0 50 chr12 35243190 35243469 -108542986 + AluSx SINE Alu 43 307 -5 1892 162 0 29 chr12 35243583 35243892 -108542563 + AluJb SINE Alu 1 300 -12 912 202 12 12 chr12 35245135 35245308 -108541147 - AluJo/FRAM SINE Alu -6 306 134 2479 63 0 3 chr12 35245308 35245611 -108540844 - AluY SINE Alu -9 302 1 873 147 22 22 chr12 35245630 35245766 -108540689 + AluJo SINE Alu 1 136 -176 2343 69 10 29 chr12 35245840 35246146 -108540309 - AluSp SINE Alu -13 300 1 5795 120 11 34 chr12 35246304 35247687 -108538768 + L1PB2 LINE L1 4781 6143 -8 181 344 98 41 chr12 35248017 35248139 -108538316 + L2 LINE L2 3138 3266 -6 658 268 73 37 chr12 35248232 35248478 -108537977 + MIR SINE MIR 6 260 -2 696 172 0 0 chr12 35250404 35250520 -108535935 - AluSg/x SINE Alu -2 310 195 1891 117 7 10 chr12 35250855 35251154 -108535301 + AluSc SINE Alu 7 304 -5 657 101 10 10 chr12 35251185 35251284 -108535171 + AluS SINE Alu 1 99 -213 808 171 36 0 chr12 35251284 35251424 -108535031 + MER58B DNA MER1_type 196 340 -1 24 32 0 0 chr12 35251543 35251574 -108534881 + AT_rich Low_complexity Low_complexity 1 31 0 346 185 0 0 chr12 35252487 35252552 -108533903 + FLAM_A SINE Alu 1 65 -67 2205 75 4 14 chr12 35253586 35253886 -108532569 + AluSp SINE Alu 6 302 0 207 313 188 0 chr12 35254683 35254795 -108531660 - MIR SINE MIR -21 241 109 2291 88 0 7 chr12 35255291 35255585 -108530870 + AluSq SINE Alu 1 292 -21 225 269 127 37 chr12 35255966 35256100 -108530355 - MIR SINE MIR -42 220 75 2042 114 17 3 chr12 35256365 35256663 -108529792 + AluSx SINE Alu 1 302 -10 2275 106 10 0 chr12 35256834 35257135 -108529320 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 35258837 35258862 -108527593 + AT_rich Low_complexity Low_complexity 1 25 0 2231 94 3 0 chr12 35262065 35262351 -108524104 - AluSx SINE Alu -25 287 1 236 167 0 0 chr12 35262355 35262397 -108524058 - L1M4 LINE L1 -309 5869 5828 1547 166 93 0 chr12 35262398 35262711 -108523744 + MER7A DNA MER2_type 2 341 -5 360 167 108 10 chr12 35262712 35262814 -108523641 - L1M4 LINE L1 -367 5817 5706 2073 131 3 0 chr12 35262873 35263170 -108523285 - AluSx SINE Alu -14 298 1 2557 62 0 0 chr12 35263655 35263961 -108522494 - AluY SINE Alu -5 306 1 2416 74 3 0 chr12 35265198 35265497 -108520958 + AluSp SINE Alu 1 300 -13 195 296 0 42 chr12 35266502 35266573 -108519882 - MIR SINE MIR -103 105 38 2087 131 0 32 chr12 35267292 35267605 -108518850 - AluSq SINE Alu -10 303 1 1919 133 41 3 chr12 35268309 35268603 -108517852 - AluSx SINE Alu -7 305 1 705 159 0 38 chr12 35268944 35269076 -108517379 - FLAM_C SINE Alu -16 127 1 24 0 0 0 chr12 35269221 35269245 -108517210 + AT_rich Low_complexity Low_complexity 1 24 0 255 81 0 0 chr12 35269883 35269920 -108516535 + MADE1 DNA Mariner 2 38 -42 2283 78 10 0 chr12 35270351 35270644 -108515811 - AluY SINE Alu -15 296 1 2323 73 0 3 chr12 35270978 35271267 -108515188 - AluSg SINE Alu -21 289 2 1934 143 10 10 chr12 35271835 35272135 -108514320 - AluJo SINE Alu -12 300 1 282 211 35 0 chr12 35272331 35272380 -108514075 + MER7A DNA MER2_type 4 54 -294 1586 116 113 14 chr12 35272380 35272664 -108513791 - MER1B DNA MER1_type -2 337 26 1391 197 49 0 chr12 35272663 35272947 -108513508 + MER7A DNA MER2_type 50 345 -1 * 342 254 88 26 chr12 35272976 35273090 -108513365 - L1ME3A LINE L1 -8 6162 6042 2152 106 48 0 chr12 35273240 35273533 -108512922 + AluSx SINE Alu 1 307 -5 525 277 125 19 chr12 35273622 35273800 -108512655 - L1M4 LINE L1 -1405 4741 4583 1262 183 168 23 chr12 35273800 35274062 -108512393 + AluJb SINE Alu 1 300 -2 525 277 125 19 chr12 35274062 35274251 -108512204 - L1M4 LINE L1 -1563 4583 4335 1443 57 0 6 chr12 35275479 35275654 -108510801 - AluSg/x SINE Alu -10 300 127 267 262 24 36 chr12 35276846 35276930 -108509525 + MIR SINE MIR 119 201 -61 921 287 46 31 chr12 35277444 35277859 -108508596 - LTR16A LTR ERVL -6 444 24 1714 163 20 17 chr12 35278120 35278415 -108508040 - AluJo SINE Alu -16 296 1 301 248 34 34 chr12 35278517 35278634 -108507821 - MER87 LTR ERV1 -26 515 399 2429 86 3 0 chr12 35279279 35279583 -108506872 + AluSp SINE Alu 1 305 -8 2370 93 0 3 chr12 35280431 35280743 -108505712 + AluSx SINE Alu 1 311 -1 2385 89 0 0 chr12 35281594 35281896 -108504559 + AluSg SINE Alu 1 302 -8 336 263 53 26 chr12 35282487 35282601 -108503854 - L2 LINE L2 -2 3311 3195 402 261 33 92 chr12 35283603 35283732 -108502723 + MIR3 SINE MIR 21 137 -71 2333 102 0 10 chr12 35283732 35284046 -108502409 + AluY SINE Alu 1 311 0 402 261 33 92 chr12 35284046 35284100 -108502355 + MIR3 SINE MIR 137 193 -15 2125 122 6 13 chr12 35284210 35284522 -108501933 + AluSx SINE Alu 1 310 -2 2093 115 7 7 chr12 35284524 35284820 -108501635 + AluSx SINE Alu 3 298 -14 386 228 20 20 chr12 35285388 35285489 -108500966 - MER94 DNA DNA -33 101 1 1665 154 10 50 chr12 35285535 35285834 -108500621 - AluJb SINE Alu -25 287 1 4742 144 41 41 chr12 35285898 35286502 -108499953 - L1PB4 LINE L1 -4 6152 5538 2307 125 3 0 chr12 35286502 35286813 -108499642 - AluSq SINE Alu -1 312 1 4742 144 41 41 chr12 35286813 35287304 -108499151 - L1PB4 LINE L1 -618 5538 5048 338 311 68 0 chr12 35287471 35287603 -108498852 - MIR SINE MIR 0 262 122 208 346 144 10 chr12 35287682 35287786 -108498669 - L2 LINE L2 -5 3267 3150 2664 14 0 0 chr12 35288298 35288586 -108497869 - AluYa5 SINE Alu 0 311 24 2320 141 60 74 chr12 35289180 35289614 -108496841 - MSTC LTR MaLR 0 428 1 470 283 52 12 chr12 35289874 35290047 -108496408 - L1MEc LINE L1 -6177 219 40 296 209 86 50 chr12 35290504 35290643 -108495812 - Charlie7 DNA MER1_type 0 2612 2469 328 253 0 23 chr12 35290652 35290739 -108495716 - Charlie7 DNA MER1_type -2516 96 12 540 311 90 6 chr12 35291472 35291784 -108494671 - L1MC4a LINE L1 -1894 5914 5577 2169 127 3 3 chr12 35292172 35292480 -108493975 + AluSx SINE Alu 5 312 0 1157 180 63 38 chr12 35292523 35292762 -108493693 + AluJo SINE Alu 35 279 -33 459 204 7 22 chr12 35292768 35292905 -108493550 + GA-rich Low_complexity Low_complexity 3 137 0 323 200 33 0 chr12 35293007 35293067 -108493388 + AluSp/q SINE Alu 164 225 -78 189 0 0 0 chr12 35293067 35293088 -108493367 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 443 323 37 18 chr12 35294090 35294254 -108492201 + MIR SINE MIR 9 175 -87 352 328 23 15 chr12 35294909 35295040 -108491415 - L3b LINE CR1 -255 1328 1197 1179 154 0 0 chr12 35295041 35295216 -108491239 - AluSq SINE Alu -13 300 126 2280 94 3 7 chr12 35295216 35295525 -108490930 - AluY SINE Alu -3 308 1 858 147 22 22 chr12 35295544 35295680 -108490775 + AluJo SINE Alu 1 136 -176 2280 72 13 30 chr12 35295754 35296059 -108490396 - AluSp SINE Alu -13 300 1 6257 119 11 34 chr12 35296217 35297600 -108488855 + L1PB2 LINE L1 4781 6143 -8 653 268 73 37 chr12 35298145 35298391 -108488064 + MIR SINE MIR 6 260 -2 2174 126 3 3 chr12 35300316 35300626 -108485829 - AluSx SINE Alu -2 310 1 1998 103 4 11 chr12 35300755 35301028 -108485427 + AluSx SINE Alu 1 271 -41 243 0 0 0 chr12 35301036 35301063 -108485392 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 309 86 5 chr12 35301073 35301283 -108485172 - L1M4 LINE L1 -2379 3767 3541 4591 105 38 4 chr12 35301287 35301964 -108484491 - Tigger4(Zombi) DNA MER2_type 0 2731 2032 6872 92 3 5 chr12 35301965 35303567 -108482888 - L1PA11 LINE L1 -1 7611 5997 13942 198 72 27 chr12 35303568 35307690 -108478765 - L1PA11 LINE L1 -2180 5404 4 12088 126 55 21 chr12 35307693 35308343 -108478112 - Tigger4(Zombi) DNA MER2_type -690 2041 1414 2862 3 0 0 chr12 35308343 35308648 -108477807 - AluYa5 SINE Alu -6 305 1 12088 126 55 21 chr12 35308648 35309971 -108476484 - Tigger4(Zombi) DNA MER2_type -1317 1414 2 2467 76 0 3 chr12 35310170 35310471 -108475984 - AluSx SINE Alu -12 300 1 242 185 11 54 chr12 35310811 35310903 -108475552 + (CAAA)n Simple_repeat Simple_repeat 1 88 0 1779 185 3 10 chr12 35311165 35311479 -108474976 + AluJo SINE Alu 1 312 0 442 330 113 57 chr12 35311662 35312309 -108474146 + L2 LINE L2 365 1073 -2241 2276 98 0 3 chr12 35312309 35312605 -108473850 + AluSx SINE Alu 1 295 -17 442 330 113 57 chr12 35312605 35312803 -108473652 + L2 LINE L2 1073 1258 -2056 270 357 48 18 chr12 35312853 35313021 -108473434 + L2 LINE L2 2686 2858 -456 241 351 53 38 chr12 35313051 35313182 -108473273 + L2 LINE L2 3136 3268 -4 245 238 0 16 chr12 35313682 35313745 -108472710 - L1ME LINE L1 -739 5431 5370 6050 124 19 15 chr12 35313756 35314769 -108471686 - L1PA16 LINE L1 -9 6157 5141 1430 193 11 7 chr12 35314769 35315049 -108471406 + L1P LINE L1 4810 5090 -1056 742 236 52 39 chr12 35315080 35315461 -108470994 - L1ME LINE L1 -802 5344 4959 1997 155 48 0 chr12 35315468 35315784 -108470671 + MER1B DNA MER1_type 9 339 0 2120 125 10 10 chr12 35315849 35316152 -108470303 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr12 35316203 35316227 -108470228 + AT_rich Low_complexity Low_complexity 1 24 0 2218 103 0 0 chr12 35316663 35317017 -108469438 + AluSx SINE Alu 1 354 0 245 237 82 52 chr12 35317250 35317347 -108469108 + L2 LINE L2 3214 3313 0 204 40 0 0 chr12 35317527 35317552 -108468903 + (CA)n Simple_repeat Simple_repeat 2 26 0 1551 281 34 57 chr12 35318236 35318831 -108467624 + MLT1K LTR MaLR 2 582 -6 623 270 122 0 chr12 35319868 35320057 -108466398 + MIR SINE MIR 32 243 -19 209 205 121 72 chr12 35320582 35320665 -108465790 - L2 LINE L2 -631 2683 2597 2158 111 3 26 chr12 35320802 35321109 -108465346 + AluSx SINE Alu 3 302 -10 182 311 41 74 chr12 35321121 35321243 -108465212 - L2 LINE L2 -925 2389 2272 2372 68 20 3 chr12 35321274 35321568 -108464887 - AluY SINE Alu -12 299 1 281 228 114 26 chr12 35322183 35322297 -108464158 + MIR3 SINE MIR 49 172 -36 2562 55 0 16 chr12 35322826 35323138 -108463317 - AluSc SINE Alu -2 307 1 1737 144 38 14 chr12 35323288 35323579 -108462876 + AluJb SINE Alu 1 298 -14 2311 95 3 10 chr12 35323690 35323996 -108462459 + AluY SINE Alu 1 304 -7 284 211 56 0 chr12 35324057 35324128 -108462327 + MER116 DNA Mariner 2 76 -4 338 304 43 14 chr12 35324416 35324554 -108461901 - MIR3 SINE MIR -7 201 60 1470 183 44 0 chr12 35326596 35326893 -108459562 - AluJb SINE Alu 0 309 1 1782 168 50 0 chr12 35326910 35327207 -108459248 - AluJo SINE Alu 0 312 1 2223 125 0 0 chr12 35327323 35327628 -108458827 - AluSx SINE Alu -7 305 1 2349 95 3 0 chr12 35328292 35328588 -108457867 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 35328984 35329014 -108457441 + AT_rich Low_complexity Low_complexity 1 30 0 2284 95 14 3 chr12 35329768 35330064 -108456391 + AluSc SINE Alu 1 299 -10 2145 127 3 0 chr12 35330631 35330939 -108455516 + AluSg SINE Alu 1 309 -1 34 55 0 0 chr12 35331271 35331326 -108455129 + AT_rich Low_complexity Low_complexity 1 55 0 346 382 64 34 chr12 35331716 35331983 -108454472 + L2 LINE L2 2992 3266 -6 234 250 16 31 chr12 35332353 35332417 -108454038 + GA-rich Low_complexity Low_complexity 4 66 0 342 0 0 0 chr12 35332644 35332682 -108453773 + (TG)n Simple_repeat Simple_repeat 2 39 0 2305 105 0 3 chr12 35332714 35333020 -108453435 - AluSg SINE Alu -5 305 1 276 134 15 30 chr12 35333194 35333261 -108453194 + GA-rich Low_complexity Low_complexity 1 66 0 643 231 57 94 chr12 35333404 35333489 -108452966 + MER63A DNA MER1_type 2 89 -1599 678 180 90 0 chr12 35333489 35333611 -108452844 - FLAM_A SINE Alu 0 133 1 643 231 57 94 chr12 35333611 35333737 -108452718 + MER63A DNA MER1_type 89 205 -5 817 280 62 8 chr12 35334917 35335160 -108451295 + MIR SINE MIR 7 262 0 3724 142 19 2 chr12 35335594 35336163 -108450292 + L1PA16 LINE L1 5587 6165 -1 186 133 0 0 chr12 35336298 35336328 -108450127 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 298 247 90 22 chr12 35337281 35337370 -108449085 + MLT1K LTR MaLR 494 588 0 847 157 121 0 chr12 35337717 35337883 -108448572 - MER5A DNA MER1_type -3 186 1 1918 156 3 3 chr12 35337965 35338266 -108448189 - AluJo SINE Alu -11 301 1 671 144 127 0 chr12 35338443 35338561 -108447894 + FLAM_C SINE Alu 1 133 0 2049 121 13 10 chr12 35339908 35340206 -108446249 - AluSx SINE Alu -13 299 1 2124 128 0 0 chr12 35340344 35340640 -108445815 - AluSg SINE Alu -14 296 1 2306 81 0 10 chr12 35340653 35340948 -108445507 - AluSg SINE Alu -18 292 1 217 268 37 37 chr12 35341855 35341937 -108444518 + L3 LINE CR1 671 752 -825 419 339 81 21 chr12 35342183 35342419 -108444036 + L3 LINE CR1 1286 1535 -42 197 318 59 24 chr12 35342454 35342539 -108443916 - MER5A DNA MER1_type -54 135 48 1183 69 0 98 chr12 35342937 35343110 -108443345 + AluSg SINE Alu 1 156 -154 2515 74 0 10 chr12 35343415 35343725 -108442730 - AluSp SINE Alu -6 307 1 956 155 13 0 chr12 35343727 35343882 -108442573 - FRAM SINE Alu -14 162 6 346 287 114 38 chr12 35344138 35344375 -108442080 - L2 LINE L2 -430 2884 2630 2365 82 16 3 chr12 35344731 35345035 -108441420 + AluSg SINE Alu 1 308 -2 2424 60 26 3 chr12 35345609 35345911 -108440544 + AluSq SINE Alu 1 309 -4 2010 118 4 11 chr12 35347248 35347528 -108438927 - AluSx SINE Alu -14 298 21 2465 70 3 6 chr12 35347918 35348230 -108438225 + AluY SINE Alu 1 311 0 183 280 80 13 chr12 35349025 35349100 -108437355 - L2 LINE L2 -665 2649 2570 2327 96 7 3 chr12 35349112 35349415 -108437040 + AluSp SINE Alu 1 304 -9 452 326 46 20 chr12 35349558 35349754 -108436701 + MIR SINE MIR 48 248 -14 228 111 0 0 chr12 35350176 35350212 -108436243 + (CA)n Simple_repeat Simple_repeat 2 37 0 322 310 25 65 chr12 35350236 35350436 -108436019 + L2 LINE L2 2864 3055 -217 673 165 47 16 chr12 35350470 35350597 -108435858 + FLAM_A SINE Alu 3 133 0 233 255 0 0 chr12 35350636 35350687 -108435768 + L2 LINE L2 3221 3271 -1 2127 115 0 7 chr12 35350793 35351089 -108435366 + AluSx SINE Alu 5 298 -14 1897 133 78 0 chr12 35351161 35351454 -108435001 + L1PA16 LINE L1 5841 6156 -10 21 0 0 0 chr12 35351652 35351673 -108434782 + AT_rich Low_complexity Low_complexity 1 21 0 308 212 26 88 chr12 35351692 35351805 -108434650 + MIR SINE MIR 110 215 -47 2008 129 3 20 chr12 35351873 35352167 -108434288 - AluJo SINE Alu -23 289 1 2121 86 9 76 chr12 35352913 35353228 -108433227 + AluSg SINE Alu 1 294 -16 2381 75 0 0 chr12 35354122 35354416 -108432039 - AluY SINE Alu -17 294 1 1377 133 0 5 chr12 35354976 35355172 -108431283 + AluY SINE Alu 95 289 -22 1289 178 78 0 chr12 35355237 35355456 -108430999 + MER46A DNA MER2_type 1 236 0 2220 103 0 13 chr12 35355589 35355891 -108430564 - AluSx SINE Alu -14 298 1 402 264 0 69 chr12 35356951 35357110 -108429345 + L2 LINE L2 2912 3059 -213 486 253 157 15 chr12 35357133 35357331 -108429124 + L1ME LINE L1 5545 5770 -351 24 32 0 0 chr12 35357515 35357546 -108428909 + AT_rich Low_complexity Low_complexity 1 31 0 2437 74 6 6 chr12 35357572 35357884 -108428571 + AluSx SINE Alu 1 312 0 335 332 81 27 chr12 35358258 35358577 -108427878 - L2 LINE L2 -461 2853 2470 2081 89 0 0 chr12 35358577 35358846 -108427609 + L1PA5 LINE L1 5886 6154 0 335 332 81 27 chr12 35358846 35358881 -108427574 - L2 LINE L2 -844 2470 2438 540 226 85 34 chr12 35358966 35359143 -108427312 - MIR SINE MIR -65 197 12 235 319 0 42 chr12 35359195 35359222 -108427233 - L2 LINE L2 -1292 2022 1995 1930 163 0 7 chr12 35359222 35359522 -108426933 + AluJo SINE Alu 1 298 -14 235 319 0 42 chr12 35359522 35359613 -108426842 - L2 LINE L2 -1319 1995 1909 1421 183 27 24 chr12 35360028 35360165 -108426290 + AluJo SINE Alu 3 138 -174 530 51 13 0 chr12 35360165 35360243 -108426212 + (TA)n Simple_repeat Simple_repeat 1 79 0 1421 183 27 24 chr12 35360243 35360400 -108426055 + AluJo SINE Alu 138 298 -14 292 303 61 13 chr12 35360656 35360970 -108425485 + L1M3 LINE L1 5107 5431 -743 22 35 0 0 chr12 35361495 35361524 -108424931 + AT_rich Low_complexity Low_complexity 1 29 0 1859 168 3 0 chr12 35361533 35361836 -108424619 - AluSx SINE Alu -8 304 1 402 294 46 30 chr12 35361875 35362072 -108424383 + L1ME LINE L1 5408 5607 -514 3169 256 96 41 chr12 35362100 35362649 -108423806 + L1MEc LINE L1 85 602 -5615 1252 70 25 0 chr12 35362649 35362806 -108423649 + L1PA8 LINE L1 5999 6159 -13 3169 256 96 41 chr12 35362806 35362830 -108423625 + L1MEc LINE L1 602 623 -5594 2257 97 0 0 chr12 35362830 35363136 -108423319 + AluSg SINE Alu 3 308 0 3169 256 96 41 chr12 35363136 35363850 -108422605 + L1MEc LINE L1 623 1296 -4921 473 103 0 0 chr12 35363951 35364019 -108422436 + AluSp/q SINE Alu 238 305 -8 1980 148 7 0 chr12 35364562 35364860 -108421595 - AluJb SINE Alu -12 300 1 2206 114 0 7 chr12 35364985 35365292 -108421163 - AluSx SINE Alu -7 305 1 1718 166 3 27 chr12 35366215 35366510 -108419945 - AluJo SINE Alu -24 288 1 197 343 0 14 chr12 35366510 35366580 -108419875 - L2 LINE L2 -10 3303 3235 509 299 192 37 chr12 35367123 35367778 -108418677 - L2 LINE L2 -742 2572 1816 1876 163 0 3 chr12 35367992 35368292 -108418163 - AluJb SINE Alu -13 299 1 2166 113 3 0 chr12 35370713 35371004 -108415451 + AluSq SINE Alu 1 292 -21 2197 109 0 7 chr12 35371009 35371311 -108415144 + AluSq SINE Alu 1 300 -13 2422 65 3 3 chr12 35371583 35371891 -108414564 + AluSg SINE Alu 1 308 -2 604 143 0 31 chr12 35372886 35372984 -108413471 - FLAM_A SINE Alu -8 134 40 934 62 0 0 chr12 35373128 35373240 -108413215 - AluSp/q SINE Alu -24 289 178 1659 183 116 45 chr12 35375313 35375636 -108410819 + MER39 LTR ERV1 1 299 -408 2156 128 0 0 chr12 35375636 35375932 -108410523 + AluSx SINE Alu 2 297 -15 1659 183 116 45 chr12 35375932 35376104 -108410351 + MER39 LTR ERV1 299 707 0 1618 120 42 94 chr12 35376835 35377143 -108409312 + AluSx SINE Alu 1 292 -20 1756 168 0 29 chr12 35378173 35378482 -108407973 + AluJb SINE Alu 1 300 -12 1786 151 7 0 chr12 35378925 35379203 -108407252 - AluSx SINE Alu -20 292 13 23 0 0 0 chr12 35429526 35429549 -108356906 + AT_rich Low_complexity Low_complexity 1 23 0 2129 129 3 0 chr12 35429660 35429955 -108356500 + AluSx SINE Alu 1 296 -16 473 247 98 35 chr12 35430023 35430223 -108356232 + MIR SINE MIR 3 214 -48 1056 296 84 52 chr12 35430224 35430894 -108355561 + MER21B LTR ERV1 24 714 -149 312 217 14 0 chr12 35430895 35430964 -108355491 + MIR SINE MIR 191 260 -2 203 359 0 0 chr12 35431079 35431143 -108355312 - MIR SINE MIR -105 103 40 238 216 40 14 chr12 35431652 35431726 -108354729 + MLT1K LTR MaLR 509 584 -4 214 204 0 20 chr12 35432535 35432584 -108353871 + CT-rich Low_complexity Low_complexity 2 49 0 5795 115 29 9 chr12 35432752 35433380 -108353075 - L1PBa LINE L1 -4115 2748 2089 2278 124 7 0 chr12 35433380 35433686 -108352769 - AluSg SINE Alu -2 308 1 5795 115 29 9 chr12 35433686 35434095 -108352360 - L1PBa LINE L1 -4774 2089 1690 4328 119 178 79 chr12 35434097 35435511 -108350944 - pTR5 LTR ERV1 -11 2427 743 1677 209 66 2 chr12 35435511 35436356 -108350099 - L1PBa LINE L1 -5169 1694 652 468 227 81 32 chr12 35436353 35436538 -108349917 - L1PBa LINE L1 -6664 199 6 * 25 90 0 0 chr12 35437366 35437433 -108349022 + AT_rich Low_complexity Low_complexity 1 67 0 391 291 119 15 chr12 35437644 35437778 -108348677 - MIR SINE MIR -112 150 3 26 0 0 0 chr12 35438472 35438498 -108347957 + AT_rich Low_complexity Low_complexity 1 26 0 2008 222 12 37 chr12 35439526 35440044 -108346411 - MLT1D LTR MaLR 0 505 1 768 236 18 71 chr12 35440044 35440324 -108346131 - MLT1D-int LTR MaLR 0 1371 1107 385 205 12 0 chr12 35440397 35440480 -108345975 - MLT1D-int LTR MaLR -1270 101 18 1364 224 147 19 chr12 35440507 35441046 -108345409 - L1ME2 LINE L1 -174 5990 5383 438 299 65 18 chr12 35441064 35441405 -108345050 - L1MDa LINE L1 -4796 1419 1063 2065 139 7 0 chr12 35441437 35441740 -108344715 - AluSx SINE Alu -5 307 3 687 288 130 38 chr12 35441764 35442587 -108343868 - L1MDa LINE L1 -5453 943 45 629 263 95 26 chr12 35442747 35442979 -108343476 - MIR SINE MIR -13 249 2 2235 130 0 23 chr12 35443627 35443972 -108342483 - MER1B DNA MER1_type 0 337 1 392 301 81 0 chr12 35444935 35445071 -108341384 + MIR SINE MIR 72 218 -44 772 273 64 16 chr12 35445842 35446091 -108340364 - MIR SINE MIR 0 262 2 210 331 39 23 chr12 35446662 35446792 -108339663 + L2 LINE L2 1775 1906 -1408 183 269 231 9 chr12 35447589 35447697 -108338758 - L2 LINE L2 0 3313 3182 1581 124 0 0 chr12 35447991 35448200 -108338255 + AluSx SINE Alu 1 209 -103 2280 137 86 2 chr12 35448270 35448665 -108337790 + MSTA LTR MaLR 1 428 0 256 324 0 14 chr12 35449461 35449535 -108336920 + L2 LINE L2 3198 3270 -2 397 169 13 26 chr12 35450151 35450228 -108336227 + L2 LINE L2 3225 3300 -13 225 208 0 125 chr12 35451092 35451164 -108335291 - MIR SINE MIR -32 230 168 701 192 0 0 chr12 35451167 35451297 -108335158 + MSTC LTR MaLR 251 380 -48 811 287 46 8 chr12 35451322 35451559 -108334896 - MIR SINE MIR 0 262 17 366 297 70 79 chr12 35452354 35452684 -108333771 + L1M2 LINE L1 669 995 -5854 25 0 0 0 chr12 35453311 35453336 -108333119 + AT_rich Low_complexity Low_complexity 1 25 0 743 318 139 3 chr12 35453864 35454188 -108332267 + L2 LINE L2 2941 3308 -5 1879 128 42 33 chr12 35454509 35454774 -108331681 - MER1B DNA MER1_type -2373 339 69 9040 38 2 2 chr12 35454774 35455845 -108330610 + MER11C LTR ERVK 1 1071 0 1879 128 42 33 chr12 35455845 35455915 -108330540 - MER1B DNA MER1_type -2643 69 1 23 54 0 0 chr12 35456660 35456697 -108329758 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 35457590 35457614 -108328841 + AT_rich Low_complexity Low_complexity 1 24 0 2312 88 0 0 chr12 35457701 35457996 -108328459 - AluY SINE Alu -16 295 1 2025 103 4 4 chr12 35458003 35458275 -108328180 - AluSp SINE Alu -15 298 27 233 236 87 63 chr12 35460271 35460398 -108326057 + L1MEd LINE L1 89 218 -5987 4282 202 45 28 chr12 35460744 35461835 -108324620 + L1MC3 LINE L1 6677 7785 0 330 256 62 6 chr12 35461840 35462016 -108324439 + L1MEd LINE L1 1304 1489 -4907 325 355 47 0 chr12 35462053 35462225 -108324230 + L1M4 LINE L1 3684 3863 -2283 1632 154 12 77 chr12 35462225 35462549 -108323906 - AluSg SINE Alu -7 303 1 565 291 13 0 chr12 35462678 35462829 -108323626 + L1M2 LINE L1 331 483 -6366 9170 215 32 18 chr12 35463107 35466380 -108320075 + L1M2 LINE L1 710 4021 -2827 2448 193 18 2 chr12 35466393 35466900 -108319555 + L1M2 LINE L1 4410 4924 -1924 647 128 69 0 chr12 35466900 35467002 -108319453 - AluSc SINE Alu -13 296 188 3605 69 13 64 chr12 35467037 35467585 -108318870 - L1PA7 LINE L1 -13 6141 5622 454 97 3 0 chr12 35467585 35467658 -108318797 + L1P4 LINE L1 5658 5732 -422 * 963 76 62 0 chr12 35467657 35467802 -108318653 + L1PBa LINE L1 2187 2340 -4523 239 146 0 0 chr12 35467951 35467999 -108318456 - L1MB3 LINE L1 -7 6176 6129 416 303 123 0 chr12 35468019 35468174 -108318281 - L3 LINE CR1 -72 1505 1332 2096 142 6 12 chr12 35468408 35468753 -108317702 + MER2 DNA MER2_type 1 343 -1 364 300 57 21 chr12 35468858 35468998 -108317457 + L3 LINE CR1 579 723 -854 734 156 78 7 chr12 35469361 35469515 -108316940 - MER96B DNA MER1_type? -252 165 1 832 310 142 2 chr12 35469573 35469967 -108316488 + L3 LINE CR1 787 1235 -342 188 356 0 23 chr12 35470029 35470116 -108316339 + L3 LINE CR1 1492 1576 -1 1978 168 0 0 chr12 35470351 35470654 -108315801 - AluSx SINE Alu -9 303 1 1512 191 41 31 chr12 35471046 35471340 -108315115 - AluJb SINE Alu -15 297 1 710 331 105 23 chr12 35471647 35471965 -108314490 - L2 LINE L2 0 3313 2948 2223 218 55 2 chr12 35471965 35472478 -108313977 + MLT1F LTR MaLR 1 540 -2 710 331 105 23 chr12 35472478 35472597 -108313858 - L2 LINE L2 -365 2948 2840 2071 138 0 0 chr12 35472763 35473053 -108313402 + AluSx SINE Alu 4 293 -19 2290 76 34 3 chr12 35473322 35473613 -108312842 - AluSp SINE Alu -13 300 1 1092 196 53 65 chr12 35474768 35474988 -108311467 + Charlie1a DNA MER1_type 1 217 -2544 2084 113 10 14 chr12 35474988 35475279 -108311176 - AluSx SINE Alu -22 290 1 1092 196 53 65 chr12 35475279 35475379 -108311076 + Charlie1a DNA MER1_type 217 317 -1138 1961 157 0 3 chr12 35475831 35476117 -108310338 + AluSx SINE Alu 8 292 -20 608 253 26 32 chr12 35477062 35477151 -108309304 + MIR SINE MIR 15 103 -159 2201 149 37 6 chr12 35477151 35477499 -108308956 - MER46B DNA MER2_type 0 236 3 608 253 26 32 chr12 35477499 35477599 -108308856 + MIR SINE MIR 103 203 -59 188 171 0 0 chr12 35478425 35478466 -108307989 - L2 LINE L2 0 3313 3273 2246 105 170 14 chr12 35478794 35478971 -108307484 - MSTA LTR MaLR 0 428 280 477 50 0 0 chr12 35478971 35479031 -108307424 + (GA)n Simple_repeat Simple_repeat 2 61 0 2246 105 170 14 chr12 35479031 35479223 -108307232 - MSTA LTR MaLR -148 280 1 2707 134 30 58 chr12 35479731 35480231 -108306224 + LTR19A LTR ERV1 1 486 0 2609 179 15 58 chr12 35480263 35480810 -108305645 + LTR9 LTR ERV1 1 523 -89 1110 109 6 0 chr12 35480814 35480970 -108305485 - AluSg/x SINE Alu 0 312 156 381 243 19 19 chr12 35483755 35483858 -108302597 + LTR33A LTR ERVL 418 520 -3 * 819 236 38 90 chr12 35483857 35484397 -108302058 - MER67D LTR ERV1 0 543 59 1945 126 39 11 chr12 35484710 35484995 -108301460 - AluSx SINE Alu -19 293 1 194 146 0 24 chr12 35486449 35486490 -108299965 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 719 275 86 34 chr12 35486915 35487037 -108299418 - LTR16C LTR ERVL 0 491 377 1905 188 65 14 chr12 35487037 35487453 -108299002 - LTR23 LTR ERV1 0 437 1 719 275 86 34 chr12 35487453 35487654 -108298801 - LTR16C LTR ERVL -114 377 151 34 24 0 0 chr12 35488437 35488478 -108297977 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr12 35489619 35489640 -108296815 + AT_rich Low_complexity Low_complexity 1 21 0 224 315 11 11 chr12 35490471 35490560 -108295895 - MIR SINE MIR -11 251 163 27 0 0 0 chr12 35492379 35492406 -108294049 + AT_rich Low_complexity Low_complexity 1 27 0 613 274 82 35 chr12 35492406 35492661 -108293794 - L2 LINE L2 -43 3270 3004 234 246 112 82 chr12 35492764 35492898 -108293557 - MIR3 SINE MIR -68 140 3 4310 28 0 0 chr12 35494586 35495059 -108291396 + L1PA3 LINE L1 5683 6155 0 1832 115 0 0 chr12 35495357 35495601 -108290854 + L1PB1 LINE L1 5907 6150 -1 960 244 105 55 chr12 35496135 35496328 -108290127 + MLT1H LTR MaLR 1 183 -366 1080 139 51 74 chr12 35496328 35496544 -108289911 - MER20 DNA MER1_type -4 215 5 960 244 105 55 chr12 35496544 35496678 -108289777 + MLT1H LTR MaLR 183 387 -162 983 254 34 28 chr12 35496954 35497348 -108289107 - L1M4 LINE L1 -1467 4679 4280 2232 109 0 3 chr12 35497348 35497650 -108288805 - AluSc SINE Alu -8 301 1 983 254 34 28 chr12 35497650 35497727 -108288728 - L1M4 LINE L1 -1866 4280 4205 5995 176 49 21 chr12 35498090 35498766 -108287689 - L1MA5 LINE L1 0 6300 5644 2229 99 0 16 chr12 35498766 35499070 -108287385 - AluSx SINE Alu -13 299 1 5995 176 49 21 chr12 35499070 35499251 -108287204 - L1MA5 LINE L1 -656 5644 5470 2230 110 10 0 chr12 35499251 35499550 -108286905 - AluSx SINE Alu -10 302 1 5995 176 49 21 chr12 35499550 35500855 -108285600 - L1MA5 LINE L1 -830 5470 4066 693 256 22 33 chr12 35500901 35501081 -108285374 + MER5B DNA MER1_type 1 178 0 2184 147 139 16 chr12 35502420 35502801 -108283654 - MSTA LTR MaLR 0 428 1 580 274 12 90 chr12 35504007 35504262 -108282193 + MER102a DNA MER1_type 92 326 -4 253 250 26 26 chr12 35504526 35504602 -108281853 + CT-rich Low_complexity Low_complexity 2 77 0 2900 158 25 25 chr12 35504764 35505326 -108281129 - L1MA8 LINE L1 -1 6290 5729 5160 158 12 11 chr12 35505493 35506402 -108280053 - L1MA8 LINE L1 -1419 4727 3818 741 308 87 12 chr12 35506550 35506725 -108279730 - L2 LINE L2 -589 2725 2564 2287 141 11 3 chr12 35506725 35507073 -108279382 + L1PA16 LINE L1 5812 6162 -4 741 308 87 12 chr12 35507073 35507300 -108279155 - L2 LINE L2 -750 2564 2293 956 202 6 0 chr12 35507306 35507474 -108278981 - MER45A DNA AcHobo 0 178 10 342 288 0 0 chr12 35507490 35507570 -108278885 - L2 LINE L2 -1031 2283 2204 4265 140 13 3 chr12 35507828 35508456 -108277999 + MER41B LTR ERV1 2 635 0 14407 29 2 2 chr12 35508791 35511189 -108275266 + L1PA4 LINE L1 3757 6155 0 299 303 148 49 chr12 35511428 35511692 -108274763 - L2 LINE L2 -411 2903 2614 2510 107 30 35 chr12 35511710 35512076 -108274379 + THE1B LTR MaLR 1 364 0 12367 98 5 4 chr12 35512076 35513655 -108272800 + THE1B-int LTR MaLR 1 1580 0 2516 107 33 33 chr12 35513655 35514019 -108272436 + THE1B LTR MaLR 1 364 0 5151 159 36 8 chr12 35514153 35514956 -108271499 + LTR1B LTR ERV1 1 826 0 3430 166 54 51 chr12 35515242 35515966 -108270489 + LTR8A LTR ERV1 1 726 -1 27 0 0 0 chr12 35516222 35516249 -108270206 + AT_rich Low_complexity Low_complexity 1 27 0 1426 217 40 7 chr12 35516319 35516596 -108269859 - MER61D LTR ERV1 0 501 216 663 218 35 23 chr12 35516667 35516841 -108269614 - LTR28 LTR ERV1 -844 176 1 830 179 6 0 chr12 35517084 35517252 -108269203 + CT-rich Low_complexity Low_complexity 4 172 0 6630 83 11 10 chr12 35517690 35519179 -108267276 - SVA Other Other -839 1381 8 22 35 0 0 chr12 35519287 35519316 -108267139 + AT_rich Low_complexity Low_complexity 1 29 0 210 318 95 34 chr12 35519620 35519768 -108266687 + MIR3 SINE MIR 43 199 -9 2540 145 51 10 chr12 35519989 35520404 -108266051 + MSTB1 LTR MaLR 1 432 0 529 259 112 39 chr12 35520598 35520919 -108265536 + MLT1J2 LTR MaLR 92 392 -17 1012 218 22 29 chr12 35520992 35521327 -108265128 - L1ME LINE L1 -651 5515 5186 270 92 0 154 chr12 35521423 35521440 -108265015 - L1ME LINE L1 -963 5183 5165 3287 158 26 89 chr12 35521440 35522182 -108264273 + LTR34 LTR ERV1 1 695 -4 270 92 0 154 chr12 35522182 35522229 -108264226 - L1ME LINE L1 -981 5165 5129 393 173 0 12 chr12 35522298 35522379 -108264076 + L1MA10 LINE L1 6254 6333 -1 321 255 128 10 chr12 35523240 35523342 -108263113 - MIR SINE MIR -78 184 71 730 246 82 100 chr12 35523504 35523894 -108262561 + MLT1J2 LTR MaLR 67 449 -1 361 292 105 69 chr12 35524290 35524653 -108261802 + L3b LINE CR1 1107 1482 -101 1869 135 39 4 chr12 35526200 35526481 -108259974 - AluSx SINE Alu -21 291 1 1997 179 61 5 chr12 35526486 35526877 -108259578 + Charlie1 DNA MER1_type 1636 2048 -713 330 204 0 0 chr12 35526877 35526931 -108259524 - MIR SINE MIR -190 72 19 908 110 61 49 chr12 35527455 35527619 -108258836 + MSTB1 LTR MaLR 1 166 -266 300 331 0 8 chr12 35527687 35527814 -108258641 - L1MC4a LINE L1 -1898 5910 5785 2436 73 0 0 chr12 35527847 35528147 -108258308 - AluY SINE Alu -11 300 1 439 242 86 19 chr12 35529088 35529344 -108257111 + L1PBa LINE L1 2190 2462 -4401 3137 84 23 7 chr12 35529344 35529783 -108256672 + L1PA11 LINE L1 5729 6174 0 4353 117 33 37 chr12 35529783 35530592 -108255863 + Tigger1 DNA MER2_type 1467 2272 -146 13278 180 36 6 chr12 35530607 35535977 -108250478 - L1PB1 LINE L1 -3 6864 1339 5479 91 110 89 chr12 35536025 35537521 -108248934 + pTR5 LTR ERV1 743 2433 -5 354 62 0 0 chr12 35537705 35537753 -108248702 - L1PB1 LINE L1 -5723 1140 1093 4626 184 51 6 chr12 35537754 35538743 -108247712 - L1PB1 LINE L1 -5815 1048 16 927 170 0 0 chr12 35538791 35538950 -108247505 + Tigger1 DNA MER2_type 2260 2418 0 304 271 107 0 chr12 35538975 35539152 -108247303 - L1M4c LINE L1 -4764 1620 1425 3340 70 2 0 chr12 35539174 35539604 -108246851 - L1PA10 LINE L1 -9 6159 5729 1541 110 22 0 chr12 35540474 35540701 -108245754 - L1PA15 LINE L1 -9 6156 5925 2002 128 7 0 chr12 35540729 35541038 -108245417 + AluSx SINE Alu 1 311 0 846 160 39 6 chr12 35541289 35541470 -108244985 - L1MA8 LINE L1 -2 6289 6103 2122 126 0 3 chr12 35541470 35541756 -108244699 + AluSx SINE Alu 1 285 -27 264 30 0 0 chr12 35541761 35541794 -108244661 + (TA)n Simple_repeat Simple_repeat 1 33 0 318 298 23 41 chr12 35541948 35542119 -108244336 + L1ME4a LINE L1 5749 5916 -205 25 0 0 0 chr12 35542253 35542278 -108244177 + AT_rich Low_complexity Low_complexity 1 25 0 180 345 36 12 chr12 35542861 35542945 -108243510 - MIR SINE MIR -140 122 37 234 174 0 22 chr12 35543648 35543694 -108242761 - L3 LINE CR1 -9 1568 1524 1560 203 31 17 chr12 35543937 35544297 -108242158 + MLT1A1 LTR MaLR 1 365 0 1941 154 3 22 chr12 35544435 35544753 -108241702 + AluSx SINE Alu 1 312 0 3004 183 17 12 chr12 35544818 35545403 -108241052 + Tigger7 DNA MER2_type 1 588 -1899 722 202 125 0 chr12 35546009 35546177 -108240278 + MER5A DNA MER1_type 1 189 0 694 315 97 39 chr12 35546178 35546591 -108239864 + LTR16A LTR ERVL 1 437 -13 22 0 0 0 chr12 35547257 35547279 -108239176 + AT_rich Low_complexity Low_complexity 1 22 0 1775 79 117 0 chr12 35547561 35547827 -108238628 - L1PA13 LINE L1 -4 6159 5863 239 122 0 24 chr12 35548041 35548082 -108238373 - L2 LINE L2 -19 3253 3214 21 36 0 0 chr12 35548258 35548286 -108238169 + AT_rich Low_complexity Low_complexity 1 28 0 2415 129 60 21 chr12 35548750 35549183 -108237272 - LTR7 LTR ERV1 0 450 1 10336 93 2 3 chr12 35549183 35550689 -108235766 - HERVH LTR ERV1 0 7713 6209 2985 128 14 9 chr12 35550682 35551320 -108235135 - HERVH LTR ERV1 -6767 946 1 * 2315 126 57 30 chr12 35551322 35551758 -108234697 - LTR7 LTR ERV1 -2 448 1 23 33 0 0 chr12 35551762 35551792 -108234663 + AT_rich Low_complexity Low_complexity 1 30 0 357 218 2 16 chr12 35552234 35552325 -108234130 + MLT1J2 LTR MaLR 72 160 -249 240 276 143 0 chr12 35552384 35552489 -108233966 + MLT1J2 LTR MaLR 256 375 -75 194 325 117 42 chr12 35552881 35553001 -108233454 - L2 LINE L2 -6 3266 3138 431 264 25 0 chr12 35553743 35553864 -108232591 + MER94 DNA DNA 7 130 -4 2229 137 7 41 chr12 35554420 35554836 -108231619 - L1MA6 LINE L1 -4 6296 5895 2047 124 40 27 chr12 35556097 35556467 -108229988 - THE1C LTR MaLR 0 375 1 377 283 103 14 chr12 35556512 35556657 -108229798 - MIR SINE MIR 0 262 105 215 217 83 0 chr12 35557685 35557745 -108228710 + L2 LINE L2 3208 3272 0 262 324 65 0 chr12 35557945 35558053 -108228402 - MIR SINE MIR -75 187 73 5478 119 35 5 chr12 35558229 35558905 -108227550 + L1PB1 LINE L1 5087 5807 -344 192 77 0 0 chr12 35558905 35558931 -108227524 + (TA)n Simple_repeat Simple_repeat 2 27 0 5478 119 35 5 chr12 35558931 35559279 -108227176 + L1PB1 LINE L1 5807 6143 -8 35 54 0 0 chr12 35559395 35559451 -108227004 + AT_rich Low_complexity Low_complexity 1 56 0 381 287 57 8 chr12 35559475 35559597 -108226858 - MIR SINE MIR -71 191 64 407 200 11 22 chr12 35560017 35560107 -108226348 + MER21B LTR ERV1 1 89 -774 2057 243 104 20 chr12 35560133 35560795 -108225660 + MER21B LTR ERV1 21 738 -125 2183 141 0 0 chr12 35561498 35561810 -108224645 + AluSx SINE Alu 1 312 0 41209 51 2 5 chr12 35563257 35569432 -108217023 - L1PA6 LINE L1 -2 6152 2 9056 89 5 0 chr12 35569432 35570773 -108215682 + L1P LINE L1 1832 3178 -2968 229 287 195 0 chr12 35570815 35570902 -108215553 + L2 LINE L2 3121 3224 -48 21 36 0 0 chr12 35571965 35571993 -108214462 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr12 35572445 35572495 -108213960 + AT_rich Low_complexity Low_complexity 1 50 0 319 305 80 32 chr12 35572790 35573039 -108213416 - MLT1K LTR MaLR 0 588 328 1083 190 55 3 chr12 35573198 35573487 -108212968 - MLT1B LTR MaLR 0 390 8 2126 120 7 0 chr12 35573809 35574101 -108212354 - AluSq SINE Alu -19 294 1 306 286 187 6 chr12 35574636 35574818 -108211637 + L1M4 LINE L1 2721 2935 -3211 482 241 26 26 chr12 35576409 35576525 -108209930 + L2 LINE L2 3197 3312 -1 435 351 78 38 chr12 35576580 35576950 -108209505 + L2 LINE L2 2593 2977 -337 236 246 0 0 chr12 35577742 35577799 -108208656 + MLT1L LTR MaLR 16 72 -543 2062 150 0 3 chr12 35579524 35579837 -108206618 - AluSq SINE Alu -1 312 1 915 277 153 22 chr12 35580501 35580779 -108205676 + L1MC4 LINE L1 7297 7537 -505 525 32 0 0 chr12 35580779 35580842 -108205613 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 915 277 153 22 chr12 35580842 35580933 -108205522 + L1MC4 LINE L1 7537 7615 -427 403 84 0 28 chr12 35580933 35581004 -108205451 + (TG)n Simple_repeat Simple_repeat 2 70 0 915 277 153 22 chr12 35581004 35581279 -108205176 + L1MC4 LINE L1 7615 8027 -15 3999 222 26 1 chr12 35581386 35582345 -108204110 - L1 LINE L1 -3048 4517 3535 2362 128 27 5 chr12 35582347 35582753 -108203702 - L1 LINE L1 -4332 3233 2819 3173 92 20 2 chr12 35582753 35583209 -108203246 + L1PA13 LINE L1 5696 6159 -4 337 214 95 24 chr12 35583377 35583503 -108202952 + L1ME LINE L1 5636 5770 -351 699 254 75 44 chr12 35584155 35584407 -108202048 - MIR SINE MIR -1 261 2 246 306 97 45 chr12 35584783 35584917 -108201538 - L2 LINE L2 -4 3268 3128 354 353 31 39 chr12 35585090 35585348 -108201107 - L2 LINE L2 -212 3060 2805 21 0 0 0 chr12 35585623 35585644 -108200811 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 65 57 chr12 35586745 35586869 -108199586 - L2 LINE L2 -344 2928 2804 258 319 0 0 chr12 35587536 35587605 -108198850 - L2 LINE L2 -218 3054 2986 333 238 35 91 chr12 35588328 35588360 -108198095 - MIR SINE MIR -10 252 220 1038 157 55 111 chr12 35588360 35588703 -108197752 + MER33 DNA MER1_type 1 324 0 333 238 35 91 chr12 35588703 35588813 -108197642 - MIR SINE MIR -42 220 118 2286 90 3 0 chr12 35591274 35591562 -108194893 + AluSg SINE Alu 1 289 -21 193 370 160 8 chr12 35591583 35591702 -108194753 + L2 LINE L2 3136 3272 0 321 333 48 61 chr12 35592518 35592897 -108193558 - L2 LINE L2 -3 3310 2937 2509 84 0 0 chr12 35594106 35594416 -108192039 - AluSx SINE Alu -2 310 1 26 30 0 0 chr12 35594513 35594546 -108191909 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr12 35594595 35594634 -108191821 + AT_rich Low_complexity Low_complexity 1 39 0 2570 125 3 3 chr12 35594634 35595019 -108191436 - LTR9B LTR ERV1 -84 560 176 1668 167 32 3 chr12 35596077 35596359 -108190096 - AluSx SINE Alu -22 290 1 261 328 0 0 chr12 35598015 35598082 -108188373 - MIR SINE MIR -176 86 20 184 286 12 95 chr12 35598085 35598169 -108188286 - MIR SINE MIR -93 115 39 26 0 0 0 chr12 35598245 35598271 -108188184 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 35598605 35598640 -108187815 + AT_rich Low_complexity Low_complexity 1 35 0 422 314 101 29 chr12 35598644 35599020 -108187435 + L1MC4a LINE L1 5513 5915 -206 1648 132 0 0 chr12 35599348 35599575 -108186880 - AluJo SINE Alu -15 297 71 388 253 11 0 chr12 35599613 35599708 -108186747 - L1MC4 LINE L1 -600 7442 7347 * 652 229 221 12 chr12 35599704 35599953 -108186502 + L1MC4 LINE L1 7453 7753 -289 603 284 85 49 chr12 35599970 35600417 -108186038 - HAL1b LINE L1 -834 514 52 1842 178 37 8 chr12 35602095 35602450 -108184005 - MLT1A1 LTR MaLR 0 365 1 42861 51 0 1 chr12 35602742 35608887 -108177568 - L1PA4 LINE L1 -5 6150 13 956 106 47 0 chr12 35608885 35609055 -108177400 - L1PA8A LINE L1 -700 5431 5254 * 547 230 138 13 chr12 35609461 35609613 -108176842 - MIR SINE MIR -78 184 14 572 307 80 29 chr12 35610088 35610326 -108176129 + MIR SINE MIR 13 262 0 24 32 0 0 chr12 35610767 35610798 -108175657 + AT_rich Low_complexity Low_complexity 1 31 0 1940 259 59 54 chr12 35610954 35612059 -108174396 + L1ME3A LINE L1 4888 5986 -176 3148 127 51 6 chr12 35612059 35612548 -108173907 - MER9 LTR ERVK 0 511 1 1940 259 59 54 chr12 35612548 35612608 -108173847 + L1ME3A LINE L1 5986 6044 -118 3196 138 10 6 chr12 35612608 35613117 -108173338 - MER9 LTR ERVK 0 511 1 1940 259 59 54 chr12 35613117 35613217 -108173238 + L1ME3A LINE L1 6044 6125 -37 4241 85 21 11 chr12 35613882 35614903 -108171552 + MER11A LTR ERVK 1 1266 0 545 329 74 7 chr12 35615895 35616137 -108170318 + MIR SINE MIR 2 257 -5 375 301 106 20 chr12 35616132 35616331 -108170124 + MIR SINE MIR 42 257 -5 * 370 333 46 0 chr12 35616495 35616648 -108169807 + MIR SINE MIR 77 236 -26 950 18 0 0 chr12 35616686 35616796 -108169659 - L1PA3 LINE L1 0 6155 6046 2474 164 19 19 chr12 35617740 35617976 -108168479 + MSTB LTR MaLR 1 239 -187 1914 159 41 14 chr12 35617976 35618340 -108168115 + THE1C LTR MaLR 1 374 -1 2474 164 19 19 chr12 35618340 35618529 -108167926 + MSTB LTR MaLR 238 426 0 1952 87 0 8 chr12 35619091 35619345 -108167110 + AluSx SINE Alu 61 312 0 197 299 126 23 chr12 35619481 35619568 -108166887 + L2 LINE L2 3161 3256 -16 1570 226 7 0 chr12 35619579 35619924 -108166531 + AluJb SINE Alu 1 347 0 189 0 0 0 chr12 35619924 35619945 -108166510 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 285 231 8 116 chr12 35620036 35620157 -108166298 - MER20 DNA MER1_type 0 219 112 292 280 115 27 chr12 35620355 35620514 -108165941 + MIR SINE MIR 21 188 -70 358 276 21 97 chr12 35621494 35621639 -108164816 - MER5B DNA MER1_type -24 154 21 325 260 133 44 chr12 35622244 35622425 -108164030 - L2 LINE L2 0 3272 3076 1700 185 0 7 chr12 35622925 35623212 -108163243 + AluSx SINE Alu 1 285 -27 189 268 118 39 chr12 35624022 35624149 -108162306 - L2 LINE L2 -947 2367 2231 29264 100 13 37 chr12 35624655 35627275 -108159180 + L1PA7 LINE L1 706 3386 -3083 255 31 0 0 chr12 35627275 35627307 -108159148 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 29264 100 13 37 chr12 35627307 35627437 -108159018 + L1PA7 LINE L1 3386 3518 -2951 387 0 0 0 chr12 35627437 35627480 -108158975 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 29264 100 13 37 chr12 35627480 35627492 -108158963 + L1PA7 LINE L1 3518 3529 -2940 4786 32 0 0 chr12 35627492 35628056 -108158399 - L1PA3 LINE L1 -3 6152 5589 29264 100 13 37 chr12 35628056 35631190 -108155265 + L1PA7 LINE L1 3529 6451 -18 549 246 0 0 chr12 35631211 35631337 -108155118 + L1M4 LINE L1 3445 3570 -2576 21 0 0 0 chr12 35631364 35631385 -108155070 + AT_rich Low_complexity Low_complexity 1 21 0 1023 183 11 0 chr12 35631878 35632053 -108154402 - AluJb SINE Alu -7 305 129 409 235 17 59 chr12 35632462 35632581 -108153874 - L2 LINE L2 -7 3306 3193 345 274 8 34 chr12 35633550 35633667 -108152788 - HsTC2 DNA Tc2 -1781 117 4 298 316 10 10 chr12 35633974 35634072 -108152383 - LTR67 LTR ERVL -368 189 92 325 307 79 0 chr12 35635039 35635166 -108151289 + MIR SINE MIR 45 181 -81 815 233 62 0 chr12 35635618 35635811 -108150644 + MIR SINE MIR 30 234 -28 1876 164 0 3 chr12 35636523 35636815 -108149640 + AluJb SINE Alu 1 291 -21 475 317 112 41 chr12 35636818 35637256 -108149199 - MLT1K LTR MaLR -3 585 117 230 294 0 0 chr12 35637460 35637545 -108148910 - L1MC4 LINE L1 -1340 6702 6618 400 329 46 0 chr12 35639220 35639436 -108147019 - MER112 DNA MER1_type -32 228 3 483 337 36 14 chr12 35640063 35640284 -108146171 - MIR SINE MIR -4 258 35 1078 171 0 0 chr12 35640284 35640448 -108146007 - AluJo/FRAM SINE Alu -15 297 134 2242 102 0 34 chr12 35640450 35640772 -108145683 - AluY SINE Alu 0 311 1 216 97 0 0 chr12 35640800 35640831 -108145624 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2088 89 31 7 chr12 35641383 35641674 -108144781 - AluSp SINE Alu -15 298 1 597 338 77 54 chr12 35641689 35642254 -108144201 - L2 LINE L2 -282 3031 2450 1395 66 5 30 chr12 35642384 35642582 -108143873 + AluY SINE Alu 104 296 -15 328 350 57 16 chr12 35642584 35642830 -108143625 - L1MCb LINE L1 -1404 5160 4905 21 57 0 0 chr12 35645350 35645385 -108141070 + AT_rich Low_complexity Low_complexity 1 35 0 276 207 17 0 chr12 35646350 35646408 -108140047 - MER103 DNA DNA -95 71 13 558 358 73 55 chr12 35646588 35647133 -108139322 - LTR67 LTR ERVL 0 557 3 572 332 61 16 chr12 35647149 35647462 -108138993 - MLT1L LTR MaLR -92 523 197 5616 236 54 9 chr12 35647688 35649388 -108137067 - L1MCb LINE L1 -1916 4648 2872 683 176 0 0 chr12 35649392 35649500 -108136955 - FLAM_C SINE Alu -35 108 1 4169 209 108 56 chr12 35649500 35649795 -108136660 - L1MCb LINE L1 -3818 2746 2468 1666 111 0 8 chr12 35649795 35650030 -108136425 - AluSc SINE Alu -6 303 71 5044 28 0 44 chr12 35650035 35650674 -108135781 - L1PA4 LINE L1 -8 6147 5537 534 83 0 0 chr12 35650674 35650746 -108135709 - AluSc SINE Alu -237 72 1 4169 209 108 56 chr12 35650746 35652241 -108134214 - L1MCb LINE L1 -4098 2466 777 21 36 0 0 chr12 35652251 35652279 -108134176 + AT_rich Low_complexity Low_complexity 1 28 0 861 206 33 5 chr12 35652291 35652475 -108133980 - L1MCb LINE L1 -6221 343 155 1950 193 71 106 chr12 35653261 35653965 -108132490 - MER61E LTR ERV1 -4 750 3 1836 225 113 19 chr12 35653965 35654231 -108132224 - L1MD3 LINE L1 -31 7964 7724 1946 153 0 13 chr12 35654231 35654532 -108131923 - AluSx SINE Alu -15 297 1 1836 225 113 19 chr12 35654532 35654834 -108131621 - L1MD3 LINE L1 -271 7724 7343 535 281 47 8 chr12 35656005 35656133 -108130322 - L2 LINE L2 -4 3268 3136 261 0 0 0 chr12 35656159 35656188 -108130267 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2487 182 66 71 chr12 35656188 35656884 -108129571 + LTR34 LTR ERV1 8 695 -4 613 279 60 0 chr12 35656901 35657102 -108129353 - L2 LINE L2 -174 3139 2927 539 294 172 11 chr12 35657092 35657371 -108129084 - L2 LINE L2 -529 2785 2462 * 584 60 24 0 chr12 35659005 35659088 -108127367 - L1PA7 LINE L1 0 6154 6070 707 66 38 0 chr12 35659097 35659203 -108127252 - L1P LINE L1 -789 5357 5248 234 150 0 0 chr12 35659437 35659477 -108126978 + (T)n Simple_repeat Simple_repeat 1 40 0 995 196 12 0 chr12 35660030 35660198 -108126257 + MER5A DNA MER1_type 2 171 -18 497 219 123 0 chr12 35660323 35660437 -108126018 + FLAM_C SINE Alu 1 128 -5 2369 137 5 3 chr12 35660485 35660864 -108125591 + L1PA16 LINE L1 5786 6165 -1 358 304 74 19 chr12 35661903 35662160 -108124295 + L1MEc LINE L1 1709 1979 -4417 1846 234 43 28 chr12 35662207 35662673 -108123782 + MLT1D LTR MaLR 5 477 -28 295 73 0 0 chr12 35662714 35662755 -108123700 + MLT1D LTR MaLR 465 505 0 298 218 9 9 chr12 35663048 35663158 -108123297 + L1MEc LINE L1 2126 2235 -3980 * 714 306 102 23 chr12 35663126 35663685 -108122770 + L1MEc LINE L1 2504 3106 -3109 1159 295 63 10 chr12 35663701 35664304 -108122151 + L1MEc LINE L1 3184 3818 -2397 336 268 8 16 chr12 35664302 35664323 -108122132 - L1MA4A LINE L1 0 6303 6283 * 7975 181 34 30 chr12 35664323 35665304 -108121151 - L1PB4 LINE L1 -2 6154 5178 2152 178 41 24 chr12 35665304 35665679 -108120776 + MSTB LTR MaLR 3 370 -56 2110 117 7 3 chr12 35665679 35665987 -108120468 - AluSc SINE Alu 0 309 1 2040 122 3 14 chr12 35665987 35666283 -108120172 - AluSc SINE Alu -16 293 1 2152 178 41 24 chr12 35666283 35666323 -108120132 + MSTB LTR MaLR 369 426 0 7975 181 34 30 chr12 35666323 35668021 -108118434 - L1PB4 LINE L1 -978 5178 3460 * 28423 106 14 63 chr12 35668011 35672931 -108113524 - L1PA3 LINE L1 -257 6213 1565 4893 81 136 22 chr12 35672931 35673669 -108112786 + LTR12 LTR ERV1 1 822 -4 28423 106 14 63 chr12 35673669 35674869 -108111586 - L1PA3 LINE L1 -4905 1565 308 894 197 39 0 chr12 35674869 35675047 -108111408 - MLT2B3 LTR ERVL -369 185 1 2296 225 76 42 chr12 35675052 35675436 -108111019 + L1ME2 LINE L1 5185 5554 -610 2357 85 0 3 chr12 35675436 35675730 -108110725 - AluY SINE Alu -18 293 1 2296 225 76 42 chr12 35675730 35676239 -108110216 + L1ME2 LINE L1 5554 6093 -71 1968 160 9 6 chr12 35676918 35677384 -108109071 - MER44D DNA MER2_type -1 604 2 468 261 54 9 chr12 35677596 35677707 -108108748 + FLAM_A SINE Alu 1 116 -17 26 50 0 0 chr12 35678518 35678558 -108107897 + AT_rich Low_complexity Low_complexity 1 40 0 268 287 64 0 chr12 35678875 35678969 -108107486 - MIR3 SINE MIR -8 200 101 180 0 0 0 chr12 35679819 35679839 -108106616 + (T)n Simple_repeat Simple_repeat 1 20 0 295 215 0 0 chr12 35680522 35680587 -108105868 - L1MD3 LINE L1 -8 7987 7923 21 36 0 0 chr12 35680587 35680615 -108105840 + AT_rich Low_complexity Low_complexity 1 28 0 455 233 0 9 chr12 35680619 35680735 -108105720 - L1MC4 LINE L1 -177 7865 7751 2444 76 0 3 chr12 35680774 35681076 -108105379 + AluY SINE Alu 1 301 -10 420 289 71 83 chr12 35681137 35681532 -108104923 - L1 LINE L1 -3547 2599 2210 1931 98 4 18 chr12 35681571 35681860 -108104595 - THE1C LTR MaLR -90 285 1 354 279 85 97 chr12 35681983 35682141 -108104314 - HAL1b LINE L1 -437 911 756 2068 130 3 0 chr12 35682141 35682434 -108104021 - AluSx SINE Alu -18 294 1 354 279 85 97 chr12 35682434 35682522 -108103933 - HAL1b LINE L1 -592 756 668 635 336 29 66 chr12 35682631 35683149 -108103306 - HAL1b LINE L1 -849 499 1 207 0 0 0 chr12 35683496 35683519 -108102936 + (T)n Simple_repeat Simple_repeat 1 23 0 2005 89 0 4 chr12 35684166 35684424 -108102031 - AluSq SINE Alu -16 297 41 21 0 0 0 chr12 35684583 35684604 -108101851 + AT_rich Low_complexity Low_complexity 1 21 0 226 180 45 126 chr12 35684623 35684734 -108101721 + MIR SINE MIR 96 197 -65 1817 218 46 23 chr12 35685273 35685887 -108100568 + L1M3c LINE L1 985 1612 -4529 773 261 0 5 chr12 35686050 35686245 -108100210 + L1M3c LINE L1 2565 2758 -3452 6276 108 8 6 chr12 35686245 35687241 -108099214 - L1MA3 LINE L1 0 6305 5308 3864 210 42 19 chr12 35687241 35688328 -108098127 + L1M3c LINE L1 2739 3850 -2360 2399 39 4 0 chr12 35688656 35688937 -108097518 - AluY SINE Alu -26 285 4 180 111 0 0 chr12 35689037 35689064 -108097391 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 282 154 48 chr12 35689343 35689673 -108096782 - L1M4 LINE L1 -759 5387 5023 18985 175 19 15 chr12 35690054 35695347 -108091108 - L1PA13 LINE L1 -4 6810 1404 4071 238 130 7 chr12 35695415 35696507 -108089948 - L1PA13 LINE L1 -5560 1227 2 376 264 132 19 chr12 35697107 35697319 -108089136 + LTR16B LTR ERVL 109 344 -120 195 42 0 0 chr12 35697397 35697421 -108089034 + (CA)n Simple_repeat Simple_repeat 1 24 0 4004 142 41 14 chr12 35697551 35698240 -108088215 + MER39 LTR ERV1 1 707 0 23 68 0 0 chr12 35698253 35698297 -108088158 + AT_rich Low_complexity Low_complexity 1 44 0 22 80 0 0 chr12 35698343 35698393 -108088062 + AT_rich Low_complexity Low_complexity 1 50 0 378 175 135 56 chr12 35698393 35698519 -108087936 - MER96B DNA MER1_type? -281 136 1 273 313 175 32 chr12 35698681 35698898 -108087557 + L2 LINE L2 2804 3051 -221 183 80 0 0 chr12 35699241 35699266 -108087189 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 267 226 0 0 chr12 35700131 35700184 -108086271 - MIR3 SINE MIR -6 202 150 41666 42 3 2 chr12 35700500 35706650 -108079805 + L1PA3 LINE L1 3 6155 0 1744 188 7 3 chr12 35707654 35707963 -108078492 - AluJb SINE Alu -2 310 1 28 29 0 0 chr12 35708341 35708376 -108078079 + AT_rich Low_complexity Low_complexity 1 35 0 626 319 89 5 chr12 35709068 35709281 -108077174 + L3 LINE CR1 1309 1539 -38 287 284 74 32 chr12 35709501 35709596 -108076859 + L2 LINE L2 3137 3235 -37 262 266 165 37 chr12 35709685 35709794 -108076661 - MIR SINE MIR -96 166 44 2515 157 19 5 chr12 35709897 35710317 -108076138 + MSTB LTR MaLR 1 426 0 692 303 79 39 chr12 35711513 35711955 -108074500 + MLT1G LTR MaLR 113 572 -18 801 184 85 72 chr12 35712738 35712961 -108073494 - MLT2D LTR ERVL -5 409 184 785 164 0 7 chr12 35713044 35713184 -108073271 + MLT1A1 LTR MaLR 227 365 0 954 140 135 5 chr12 35713186 35713386 -108073069 + MSTA LTR MaLR 1 226 -202 1783 73 0 0 chr12 35713386 35713620 -108072835 - LTR12 LTR ERV1 -2 712 479 4754 124 80 19 chr12 35713620 35714396 -108072059 - LTR12 LTR ERV1 -3 823 1 786 141 25 55 chr12 35714397 35714560 -108071895 + MSTA LTR MaLR 207 364 0 516 245 123 55 chr12 35714615 35715483 -108070972 - HAL1 LINE L1 -114 2393 1390 246 79 0 0 chr12 35715489 35715527 -108070928 + MER4E LTR ERV1 162 199 -567 7710 21 1 0 chr12 35715527 35716996 -108069459 - L1PA3 LINE L1 0 6155 4684 10794 31 20 0 chr12 35716997 35718365 -108068090 + L1PA3 LINE L1 3283 4677 -1469 2269 172 50 61 chr12 35718366 35718943 -108067512 + LTR49 LTR ERV1 25 595 0 937 276 75 63 chr12 35719060 35719232 -108067223 - HAL1 LINE L1 -1254 1253 1085 2269 102 3 0 chr12 35719232 35719525 -108066930 - AluSp SINE Alu -18 295 2 937 276 75 63 chr12 35719525 35720023 -108066432 - HAL1 LINE L1 -1422 1085 575 4771 141 162 21 chr12 35720881 35721840 -108064615 - Tigger3b DNA MER2_type -1810 1218 92 4538 64 87 0 chr12 35721840 35722447 -108064008 - PABL_A LTR ERV1 0 660 1 4771 141 162 21 chr12 35722447 35722554 -108063901 - Tigger3b DNA MER2_type -2936 92 1 1823 186 3 0 chr12 35722671 35722972 -108063483 + AluJo SINE Alu 1 302 -10 1001 296 21 0 chr12 35723465 35723708 -108062747 - MIR SINE MIR -12 250 3 2373 115 0 0 chr12 35724034 35724346 -108062109 + AluSx SINE Alu 1 312 0 2266 113 43 61 chr12 35724796 35725238 -108061217 + LTR23 LTR ERV1 4 437 0 1656 162 3 0 chr12 35725743 35726027 -108060428 + MER34C LTR ERV1 12 296 -289 362 301 124 13 chr12 35726037 35726190 -108060265 + MIR SINE MIR 82 251 -11 850 231 143 128 chr12 35726595 35726923 -108059532 - MER50 LTR ERV1 0 734 413 463 180 0 0 chr12 35726923 35727012 -108059443 - L1PA11 LINE L1 -4 6170 6082 850 231 143 128 chr12 35727012 35727397 -108059058 - MER50 LTR ERV1 -321 413 10 289 291 71 40 chr12 35727406 35727588 -108058867 + MIR SINE MIR 2 184 -63 3043 147 16 8 chr12 35727610 35728112 -108058343 - MER84 LTR ERV1 0 507 2 449 122 14 14 chr12 35728112 35728186 -108058269 - MER84 LTR ERVI -433 74 1 181 283 65 0 chr12 35728190 35728236 -108058219 + MIR SINE MIR 210 258 -4 1318 227 104 19 chr12 35728568 35729204 -108057251 + LTR48 LTR ERV1 17 542 0 1015 107 13 7 chr12 35729543 35729692 -108056763 - AluY SINE Alu -4 307 158 297 358 16 24 chr12 35729783 35729897 -108056558 + MIR SINE MIR 32 145 -73 3130 113 0 13 chr12 35729897 35730367 -108056088 - MER4C LTR ERV1 0 465 2 2103 161 8 31 chr12 35731430 35731814 -108054641 + THE1C LTR MaLR 1 375 0 9284 121 35 43 chr12 35731814 35732292 -108054163 + THE1C-int LTR MaLR 1 481 -1099 2269 97 3 3 chr12 35732292 35732592 -108053863 + AluY SINE Alu 1 300 -11 9284 121 35 43 chr12 35732592 35733705 -108052750 + THE1C-int LTR MaLR 481 1580 0 2395 133 8 11 chr12 35733705 35734081 -108052374 + THE1C LTR MaLR 1 375 0 1666 181 25 54 chr12 35734500 35734546 -108051909 - MLT2C1 LTR ERVL -1 396 350 387 0 0 0 chr12 35734546 35734589 -108051866 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1666 181 25 54 chr12 35734589 35734950 -108051505 - MLT2C1 LTR ERVL -47 350 1 210 271 29 57 chr12 35735308 35735378 -108051077 - L2 LINE L2 -18 3254 3187 217 293 49 57 chr12 35735448 35735571 -108050884 - L2 LINE L2 -185 3087 2966 180 111 0 0 chr12 35736552 35736579 -108049876 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35736852 35737257 -108049198 + MLT1A1 LTR MaLR 1 365 0 1039 119 6 6 chr12 35737326 35737355 -108049100 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 1039 119 6 6 chr12 35737355 35737532 -108048923 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 758 269 56 0 chr12 35737692 35737889 -108048566 - MIR SINE MIR -6 256 49 2091 157 22 37 chr12 35741100 35741509 -108044946 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35741518 35741652 -108044803 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35741671 35741979 -108044476 + LTR40b LTR ERVL 124 455 -7 599 211 8 24 chr12 35742504 35742627 -108043828 + FLAM_A SINE Alu 2 122 -11 3727 45 0 6 chr12 35742856 35742876 -108043579 + L1P LINE L1 4541 4560 -1586 225 0 0 0 chr12 35742876 35742901 -108043554 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7466 25 5 0 chr12 35742901 35744026 -108042429 - L1PA3 LINE L1 -10 6145 5012 3727 45 0 6 chr12 35744026 35744493 -108041962 + L1P LINE L1 4558 5026 -1120 1557 145 74 26 chr12 35745472 35745763 -108040692 + AluJo SINE Alu 1 304 0 22 0 0 0 chr12 35746385 35746407 -108040048 + AT_rich Low_complexity Low_complexity 1 22 0 343 279 183 14 chr12 35746818 35747037 -108039418 + MIR SINE MIR 3 258 -4 256 287 93 0 chr12 35747383 35747491 -108038964 + HAL1 LINE L1 6 123 -2384 * 3410 256 64 95 chr12 35747481 35748361 -108038094 + L1MDa LINE L1 3 908 -5632 1588 176 33 19 chr12 35748361 35748668 -108037787 - AluJb SINE Alu -1 311 1 3410 256 64 95 chr12 35748668 35748703 -108037752 + L1MDa LINE L1 908 943 -5597 2668 188 40 4 chr12 35748703 35749204 -108037251 + LTR53 LTR ERVL 1 519 0 3410 256 64 95 chr12 35749204 35749828 -108036627 + L1MDa LINE L1 943 1496 -5044 1734 192 29 39 chr12 35749829 35750500 -108035955 + L1MC/D LINE L1 4964 5629 -730 290 296 28 19 chr12 35750507 35750615 -108035840 - MER87 LTR ERV1 0 541 433 699 209 17 17 chr12 35750981 35751153 -108035302 + L1MC/D LINE L1 5630 5801 -558 268 322 11 22 chr12 35751475 35751565 -108034890 - MIR SINE MIR -165 97 9 771 233 83 92 chr12 35752391 35752933 -108033522 - MER34 LTR ERV1 -5 537 1 3456 80 4 2 chr12 35753131 35753583 -108032872 - MLT2A2 LTR ERVL 0 453 1 2639 173 31 68 chr12 35753819 35754418 -108032037 + LTR9 LTR ERV1 1 577 -35 5680 151 20 31 chr12 35754418 35755501 -108030954 - MER11C LTR ERVK 0 1071 1 2639 173 31 68 chr12 35755501 35755536 -108030919 + LTR9 LTR ERV1 577 612 0 2107 122 0 32 chr12 35755837 35756148 -108030307 + AluSx SINE Alu 3 303 -9 491 224 26 9 chr12 35756336 35756452 -108030003 - LTR52 LTR ERVL -37 384 267 472 242 46 20 chr12 35756489 35756642 -108029813 - LTR52 LTR ERVL -256 165 9 2379 97 0 0 chr12 35756699 35756997 -108029458 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr12 35757167 35757188 -108029267 + AT_rich Low_complexity Low_complexity 1 21 0 410 261 0 0 chr12 35757614 35757702 -108028753 + MER58 DNA MER1_type 12 99 -2321 511 184 0 19 chr12 35757714 35757817 -108028638 + MER58 DNA MER1_type 2318 2418 -2 251 367 44 0 chr12 35760852 35761032 -108025423 + L1ME LINE L1 5376 5563 -603 322 258 58 65 chr12 35761866 35762021 -108024434 - L2 LINE L2 0 3313 3160 251 204 57 34 chr12 35762124 35762212 -108024243 - L1ME3A LINE L1 -158 6012 5923 914 314 33 18 chr12 35762256 35762712 -108023743 + ERVL LTR ERVL 2454 2916 -2848 776 257 84 4 chr12 35763296 35763545 -108022910 + ERVL LTR ERVL 4780 5048 -716 2430 187 41 98 chr12 35763561 35764288 -108022167 + LTR8A LTR ERV1 34 719 -8 561 279 32 59 chr12 35764292 35764659 -108021796 + ERVL LTR ERVL 5042 5364 -290 1024 307 79 31 chr12 35764932 35765371 -108021084 - L2 LINE L2 0 3313 2845 279 0 0 0 chr12 35765371 35765402 -108021053 + (TG)n Simple_repeat Simple_repeat 1 31 0 1024 307 79 31 chr12 35765402 35765480 -108020975 - L2 LINE L2 -468 2845 2772 1436 248 33 20 chr12 35766066 35766457 -108019998 - MSTD LTR MaLR 0 396 1 2069 159 22 37 chr12 35768344 35768753 -108017702 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35768762 35768896 -108017559 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35768915 35769223 -108017232 + LTR40b LTR ERVL 124 455 -7 181 366 59 0 chr12 35769233 35769334 -108017121 + L2 LINE L2 2726 2832 -482 628 235 0 0 chr12 35769748 35769863 -108016592 + FLAM_A SINE Alu 2 116 -17 225 0 0 0 chr12 35770121 35770146 -108016309 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 38967 41 26 2 chr12 35770146 35776065 -108010390 - L1PA3 LINE L1 -10 6145 84 21 0 0 0 chr12 35776199 35776220 -108010235 + AT_rich Low_complexity Low_complexity 1 21 0 245 286 16 0 chr12 35776624 35776687 -108009768 - MLT1J2 LTR MaLR -44 406 343 442 239 107 41 chr12 35776750 35776947 -108009508 - MLT1J2 LTR MaLR -240 210 1 277 323 0 0 chr12 35777569 35777662 -108008793 + L2 LINE L2 3221 3313 0 277 258 0 0 chr12 35778929 35778991 -108007464 - MER94 DNA DNA -72 62 1 311 113 31 16 chr12 35779223 35779294 -108007161 - MLT2D LTR ERVL 0 515 454 1344 224 64 3 chr12 35779358 35779702 -108006753 - MLT2D LTR ERVL -49 365 1 378 348 44 0 chr12 35779705 35779840 -108006615 - MIR SINE MIR -118 144 4 246 373 24 24 chr12 35779843 35779969 -108006486 - L2 LINE L2 -265 3007 2882 2205 112 7 0 chr12 35780451 35780747 -108005708 - AluSx SINE Alu -14 298 1 228 203 43 14 chr12 35780787 35780856 -108005599 + T-rich Low_complexity Low_complexity 1 71 0 272 291 13 0 chr12 35780891 35780970 -108005485 + (TAAA)n Simple_repeat Simple_repeat 3 82 0 252 59 0 0 chr12 35781186 35781220 -108005235 + (TC)n Simple_repeat Simple_repeat 1 34 0 1522 227 73 16 chr12 35781229 35781679 -108004776 - L1ME1 LINE L1 -318 5848 5373 36 40 0 0 chr12 35782180 35782230 -108004225 + AT_rich Low_complexity Low_complexity 1 50 0 365 172 66 2 chr12 35782231 35782697 -108003758 + (TA)n Simple_repeat Simple_repeat 1 495 0 357 144 75 0 chr12 35782713 35782891 -108003564 + (TA)n Simple_repeat Simple_repeat 1 191 0 2481 142 47 0 chr12 35782971 35783380 -108003075 + MSTC LTR MaLR 1 428 0 2990 125 30 118 chr12 35784769 35785440 -108001015 - LTR9 LTR ERV1 0 612 1 23 33 0 0 chr12 35785499 35785529 -108000926 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr12 35785782 35785816 -108000639 + AT_rich Low_complexity Low_complexity 1 34 0 330 354 24 0 chr12 35786071 35786198 -108000257 + MIR SINE MIR 102 231 -31 451 255 9 9 chr12 35786366 35786472 -107999983 + L2 LINE L2 3192 3297 -16 844 295 62 7 chr12 35787099 35787404 -107999051 - HERV16 LTR ERVL -2727 2269 1948 425 258 120 9 chr12 35787741 35787958 -107998497 + LTR16A1 LTR ERVL 202 442 -15 350 62 0 0 chr12 35787955 35788003 -107998452 - Alu SINE Alu -253 48 1 * 1615 176 65 3 chr12 35788005 35788329 -107998126 - Tigger3(Golem) DNA MER2_type -2685 344 1 21 36 0 0 chr12 35788608 35788636 -107997819 + AT_rich Low_complexity Low_complexity 1 28 0 1855 166 7 0 chr12 35788912 35789202 -107997253 - AluJb SINE Alu -9 303 12 202 268 0 54 chr12 35789241 35789297 -107997158 + L2 LINE L2 3004 3056 -257 2819 146 80 4 chr12 35789393 35789985 -107996470 - LTR24C LTR ERV1 0 593 2 236 245 0 0 chr12 35790012 35790065 -107996390 + MLT1F LTR MaLR 2 54 -488 256 329 12 29 chr12 35790160 35790330 -107996125 + CT-rich Low_complexity Low_complexity 3 169 0 * 395 307 0 20 chr12 35790208 35790361 -107996094 + C-rich Low_complexity Low_complexity 1 150 0 551 283 122 28 chr12 35790563 35790810 -107995645 + MLT1F LTR MaLR 220 464 -78 1875 122 0 4 chr12 35790866 35791128 -107995327 + AluSg SINE Alu 1 261 -49 300 293 21 14 chr12 35791145 35791285 -107995170 + MLT1F-int LTR MaLR 1 141 -1230 657 239 66 66 chr12 35791286 35791620 -107994835 + MLT1F-int LTR MaLR 278 611 -760 2234 149 0 5 chr12 35791770 35792138 -107994317 + MER47A DNA MER2_type 1 366 0 1933 162 128 10 chr12 35792336 35792719 -107993736 + MSTA LTR MaLR 1 428 0 3918 190 30 4 chr12 35792719 35793507 -107992948 + MSTA-int LTR MaLR 1 809 -842 1055 203 99 60 chr12 35793751 35794165 -107992290 + LTR8A LTR ERV1 290 719 -8 3451 144 76 19 chr12 35794173 35794817 -107991638 + MER39 LTR ERV1 27 707 0 545 300 31 27 chr12 35794817 35795040 -107991415 - HsTC2 DNA Tc2 -1187 711 488 228 177 0 32 chr12 35795044 35795106 -107991349 - HsTC2 DNA Tc2 -1607 291 232 21 0 0 0 chr12 35795427 35795448 -107991007 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 35795635 35795656 -107990799 + AT_rich Low_complexity Low_complexity 1 21 0 4670 156 20 14 chr12 35795729 35796610 -107989845 - L1MA4 LINE L1 0 6300 5414 2717 133 69 0 chr12 35796814 35797318 -107989137 + MER34C LTR ERV1 40 578 -7 3153 215 106 56 chr12 35797336 35798402 -107988053 - LTR28 LTR ERV1 -19 1736 1 24 53 0 0 chr12 35798444 35798482 -107987973 + AT_rich Low_complexity Low_complexity 1 38 0 1029 202 19 30 chr12 35798995 35799262 -107987193 - LTR48B LTR ERV1 0 644 381 205 261 43 33 chr12 35799469 35799561 -107986894 - L2 LINE L2 -1905 1409 1317 2088 151 19 53 chr12 35799561 35799991 -107986464 + MSTC LTR MaLR 1 415 -13 1137 316 41 0 chr12 35800040 35800385 -107986070 - L2 LINE L2 -2047 1267 909 2576 266 109 25 chr12 35800395 35801388 -107985067 + L2 LINE L2 1705 2780 -534 691 323 130 22 chr12 35801440 35801809 -107984646 + L2 LINE L2 2904 3312 -1 308 200 0 0 chr12 35802011 35802066 -107984389 - tRNA-Met-e tRNA tRNA -20 55 1 1557 173 0 18 chr12 35802839 35803116 -107983339 + AluJo SINE Alu 40 311 -1 23 0 0 0 chr12 35804512 35804535 -107981920 + AT_rich Low_complexity Low_complexity 1 23 0 1357 240 9 76 chr12 35804736 35805186 -107981269 - LTR40a LTR ERVL 0 519 100 1034 129 8 98 chr12 35805243 35805299 -107981156 - L1MA7 LINE L1 -138 6153 6094 1953 153 143 11 chr12 35805299 35805677 -107980778 + MSTC LTR MaLR 1 428 0 1034 129 8 98 chr12 35805677 35805876 -107980579 - L1MA7 LINE L1 -197 6094 5921 4844 187 25 16 chr12 35806813 35807791 -107978664 + L1M1 LINE L1 626 1611 -5954 * 6403 117 24 5 chr12 35807774 35808850 -107977605 + L1M1 LINE L1 2198 3294 -4271 2466 42 7 3 chr12 35809412 35809722 -107976733 + AluY SINE Alu 1 311 0 592 337 129 5 chr12 35809761 35810132 -107976323 + L2 LINE L2 2897 3313 0 1467 201 52 4 chr12 35810139 35810408 -107976047 + AluJo SINE Alu 1 282 -30 7189 90 4 7 chr12 35810718 35811794 -107974661 + L1P LINE L1 3939 5011 -1135 3382 178 21 10 chr12 35811905 35812813 -107973642 + L1M1 LINE L1 3413 4330 -3235 931 200 12 0 chr12 35812820 35813041 -107973414 + AluJb SINE Alu 145 367 0 3924 192 12 16 chr12 35813041 35814004 -107972451 + L1M1 LINE L1 4315 5274 -2291 1764 124 0 3 chr12 35814004 35814283 -107972172 + L1MA2 LINE L1 6024 6304 0 4029 65 0 6 chr12 35814770 35815294 -107971161 - L1PA5 LINE L1 -3 6151 5631 2558 148 34 5 chr12 35816046 35816459 -107969996 - MSTB LTR MaLR 0 426 2 469 181 9 48 chr12 35817547 35817652 -107968803 + MLT1B LTR MaLR 290 390 0 405 274 11 0 chr12 35818735 35818830 -107967625 + MER20B DNA MER1_type 101 196 -587 26 0 0 0 chr12 35818834 35818860 -107967595 + AT_rich Low_complexity Low_complexity 1 26 0 4979 156 33 13 chr12 35818866 35820164 -107966291 - L1MA8 LINE L1 -15 6276 4954 364 319 59 25 chr12 35821445 35821564 -107964891 + L2 LINE L2 3142 3264 -8 887 183 6 0 chr12 35821847 35822022 -107964433 - L1MB1 LINE L1 -2 6166 5991 180 111 0 0 chr12 35822782 35822809 -107963646 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35823082 35823487 -107962968 + MLT1A1 LTR MaLR 1 365 0 458 173 5 54 chr12 35823576 35823761 -107962694 + CT-rich Low_complexity Low_complexity 4 179 0 1023 47 8 0 chr12 35824224 35824372 -107962083 + L1PA3 LINE L1 6015 6163 0 1907 110 13 23 chr12 35825149 35825450 -107961005 - AluSg SINE Alu -12 298 1 24 0 0 0 chr12 35826147 35826171 -107960284 + AT_rich Low_complexity Low_complexity 1 24 0 413 280 47 76 chr12 35826931 35827167 -107959288 + L2 LINE L2 2281 2509 -805 577 203 154 12 chr12 35827276 35827599 -107958856 - LTR48 LTR ERV1 -340 447 4 3663 88 31 99 chr12 35827736 35828380 -107958075 - MER4A LTR ERV1 0 600 1 191 333 13 13 chr12 35828609 35828684 -107957771 - L2 LINE L2 -3 3310 3236 2993 131 35 36 chr12 35829981 35830532 -107955923 - MER21A LTR ERV1 -6 925 376 1230 121 109 4 chr12 35830537 35830776 -107955679 - MER21A LTR ERV1 -667 264 1 380 332 21 58 chr12 35831048 35831238 -107955217 - MIR SINE MIR -78 184 2 2807 193 39 15 chr12 35831479 35832097 -107954358 + LTR48B LTR ERV1 1 633 -11 3149 11 0 0 chr12 35832097 35832466 -107953989 + L1PA3 LINE L1 5637 6005 -150 221 170 19 94 chr12 35832609 35832715 -107953740 + (CACCC)n Simple_repeat Simple_repeat 1 98 0 210 150 0 0 chr12 35832726 35832766 -107953689 + (C)n Simple_repeat Simple_repeat 1 40 0 221 179 19 75 chr12 35832771 35832877 -107953578 + C-rich Low_complexity Low_complexity 5 104 0 182 133 0 22 chr12 35833014 35833059 -107953396 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 436 222 30 36 chr12 35833692 35833859 -107952596 - LTR36 LTR ERV1 -445 166 1 4119 92 10 88 chr12 35834226 35834946 -107951509 - MER4A LTR ERV1 0 664 1 217 103 15 59 chr12 35834987 35835055 -107951400 + (TTC)n Simple_repeat Simple_repeat 2 66 0 3721 158 112 7 chr12 35836370 35837117 -107949338 - LTR1B LTR ERV1 0 826 1 798 274 118 14 chr12 35837247 35837535 -107948920 - LTR36 LTR ERV1 0 611 294 286 356 80 16 chr12 35838472 35838660 -107947795 + MIR SINE MIR 24 223 -39 266 299 120 48 chr12 35838744 35838821 -107947634 + MIR SINE MIR 64 134 -128 2497 57 3 0 chr12 35838821 35839121 -107947334 + AluY SINE Alu 1 301 -10 266 299 120 48 chr12 35839121 35839210 -107947245 + MIR SINE MIR 134 242 -20 189 205 51 0 chr12 35839180 35839219 -107947236 + L2 LINE L2 3217 3257 -15 * 249 230 158 65 chr12 35840193 35840488 -107945967 + L1ME LINE L1 5270 5555 -607 1963 119 0 30 chr12 35840644 35840946 -107945509 - AluSq SINE Alu -6 307 15 272 243 27 0 chr12 35841116 35841190 -107945265 - L1MC4 LINE L1 -140 7902 7827 551 273 204 0 chr12 35842135 35842367 -107944088 + MER102a DNA MER1_type 46 320 -10 1331 52 0 0 chr12 35848307 35848462 -107937993 - AluSq SINE Alu -77 236 82 2506 80 0 0 chr12 35848684 35848995 -107937460 - AluSq SINE Alu 0 313 3 387 119 0 0 chr12 35849885 35849952 -107936503 + (TG)n Simple_repeat Simple_repeat 2 68 0 252 300 11 44 chr12 35850291 35850381 -107936074 - MIR SINE MIR -141 121 35 297 0 0 0 chr12 35850619 35850652 -107935803 + (A)n Simple_repeat Simple_repeat 1 33 0 680 229 75 54 chr12 35851642 35851882 -107934573 - MIR SINE MIR 0 262 18 25 0 0 0 chr12 35852287 35852312 -107934143 + AT_rich Low_complexity Low_complexity 1 25 0 277 275 25 12 chr12 35852980 35853060 -107933395 - MIR SINE MIR -122 140 60 28 0 0 0 chr12 35854621 35854649 -107931806 + AT_rich Low_complexity Low_complexity 1 28 0 357 306 191 5 chr12 35855264 35855473 -107930982 + L2 LINE L2 2554 2801 -513 445 213 0 87 chr12 35855487 35855562 -107930893 - MER94 DNA DNA -14 120 59 1525 138 63 0 chr12 35855562 35855801 -107930654 - AluSx SINE Alu -20 292 39 445 213 0 87 chr12 35855801 35855852 -107930603 - MER94 DNA DNA -75 59 5 592 336 95 39 chr12 35855864 35855948 -107930507 + L2 LINE L2 2805 2883 -430 201 74 0 0 chr12 35855948 35855975 -107930480 + (TG)n Simple_repeat Simple_repeat 2 28 0 592 336 95 39 chr12 35855975 35856372 -107930083 + L2 LINE L2 2883 3313 0 350 359 81 31 chr12 35856754 35856977 -107929478 + MIR SINE MIR 4 237 -25 338 305 0 0 chr12 35856983 35857065 -107929390 + L2 LINE L2 3186 3267 -5 1745 142 29 7 chr12 35857278 35857553 -107928902 - AluJb SINE Alu -12 300 20 222 363 105 11 chr12 35858776 35858966 -107927489 + MIR SINE MIR 7 214 -48 390 286 36 0 chr12 35859476 35859588 -107926867 + MIR3 SINE MIR 87 202 -6 25 0 0 0 chr12 35860099 35860124 -107926331 + AT_rich Low_complexity Low_complexity 1 25 0 223 304 0 0 chr12 35860157 35860213 -107926242 + (TA)n Simple_repeat Simple_repeat 1 56 0 309 319 43 35 chr12 35860238 35860354 -107926101 - L2 LINE L2 0 3272 3156 205 138 0 0 chr12 35860352 35860381 -107926074 + MIR SINE MIR 82 110 -152 * 2173 114 13 0 chr12 35860457 35860765 -107925690 - AluSx SINE Alu 0 312 1 231 88 0 0 chr12 35860768 35860802 -107925653 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 389 71 0 214 chr12 35862480 35862578 -107923877 - MADE1 DNA Mariner -1 79 3 628 308 88 12 chr12 35863088 35863547 -107922908 + L2 LINE L2 2645 3310 -3 394 363 19 0 chr12 35864101 35864258 -107922197 - MIR SINE MIR -50 212 53 2283 82 3 3 chr12 35864340 35864644 -107921811 + AluY SINE Alu 4 307 -4 183 352 0 19 chr12 35865026 35865080 -107921375 + L2 LINE L2 2087 2139 -1175 415 343 73 11 chr12 35865454 35865632 -107920823 + MIR3 SINE MIR 18 206 -2 21 36 0 0 chr12 35866021 35866049 -107920406 + AT_rich Low_complexity Low_complexity 1 28 0 1760 64 176 0 chr12 35866217 35866467 -107919988 - AluSc SINE Alu -5 294 1 691 230 64 5 chr12 35866716 35866920 -107919535 - LTR33 LTR ERVL -1 520 305 189 336 124 25 chr12 35867265 35867506 -107918949 - L2 LINE L2 -179 3093 2829 2391 86 0 0 chr12 35867761 35868064 -107918391 + AluY SINE Alu 1 303 -8 486 284 80 38 chr12 35868283 35868522 -107917933 - MIR SINE MIR -12 250 2 21 0 0 0 chr12 35869291 35869312 -107917143 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 35869821 35869854 -107916601 + AT_rich Low_complexity Low_complexity 1 33 0 2073 125 3 7 chr12 35870272 35870569 -107915886 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr12 35871050 35871093 -107915362 + AT_rich Low_complexity Low_complexity 1 43 0 246 276 209 22 chr12 35871362 35871496 -107914959 - L2 LINE L2 -7 3265 3107 22 70 0 0 chr12 35872701 35872744 -107913711 + AT_rich Low_complexity Low_complexity 1 43 0 2038 123 7 13 chr12 35872772 35873073 -107913382 - AluSx SINE Alu -13 299 1 859 164 6 18 chr12 35873625 35873790 -107912665 + MLT1D LTR MaLR 1 163 -342 572 184 95 89 chr12 35873792 35873920 -107912535 + MLT1D LTR MaLR 287 418 -87 2241 100 3 10 chr12 35873920 35874229 -107912226 - AluSg SINE Alu -3 307 1 572 184 95 89 chr12 35874229 35874290 -107912165 + MLT1D LTR MaLR 418 477 -28 259 128 256 0 chr12 35874324 35874402 -107912053 + MLT1D LTR MaLR 408 505 0 23 33 0 0 chr12 35874423 35874453 -107912002 + AT_rich Low_complexity Low_complexity 1 30 0 249 231 138 0 chr12 35874679 35874744 -107911711 + L2 LINE L2 3239 3312 -1 23 0 0 0 chr12 35875054 35875077 -107911378 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 91 21 chr12 35875357 35875500 -107910955 + L1ME4a LINE L1 5628 5780 -341 274 264 108 7 chr12 35875588 35875736 -107910719 + L1ME4a LINE L1 5956 6118 -3 1851 176 0 13 chr12 35877134 35877447 -107909008 - AluJo SINE Alu -3 309 1 1994 136 0 0 chr12 35878759 35879039 -107907416 - AluSx SINE Alu -17 295 16 1902 62 0 8 chr12 35879047 35879288 -107907167 - AluY SINE Alu -8 303 65 446 272 200 56 chr12 35879288 35879600 -107906855 + L3 LINE CR1 1113 1473 -104 22 0 0 0 chr12 35880348 35880370 -107906085 + AT_rich Low_complexity Low_complexity 1 22 0 651 306 77 5 chr12 35880467 35880689 -107905766 - MIR SINE MIR -20 242 5 314 143 16 0 chr12 35882309 35882372 -107904083 + (TG)n Simple_repeat Simple_repeat 2 65 0 458 272 66 15 chr12 35882803 35882939 -107903516 + MIR SINE MIR 44 186 -76 33 73 0 0 chr12 35883714 35883782 -107902673 + AT_rich Low_complexity Low_complexity 1 68 0 384 22 0 0 chr12 35885183 35885228 -107901227 + (CA)n Simple_repeat Simple_repeat 1 45 0 1235 171 18 13 chr12 35886214 35886442 -107900013 + MLT1A1 LTR MaLR 1 229 -136 298 343 74 23 chr12 35887001 35887217 -107899238 - L2 LINE L2 -522 2792 2566 260 275 14 0 chr12 35887290 35887359 -107899096 - L2 LINE L2 -958 2356 2287 400 358 88 39 chr12 35887429 35887743 -107898712 - L2 LINE L2 -1154 2160 1814 2346 83 0 3 chr12 35887743 35888044 -107898411 + AluY SINE Alu 1 300 -11 400 358 88 39 chr12 35888044 35888196 -107898259 - L2 LINE L2 -1500 1814 1671 2022 138 3 3 chr12 35889469 35889480 -107896975 - AluSq SINE Alu -17 296 286 459 0 0 0 chr12 35889480 35889531 -107896924 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2022 138 3 3 chr12 35889531 35889815 -107896640 - AluSq SINE Alu -26 287 1 279 315 9 0 chr12 35890875 35890983 -107895472 + GA-rich Low_complexity Low_complexity 2 110 0 1020 203 32 81 chr12 35891046 35891356 -107895099 + MLT1B LTR MaLR 4 298 -92 266 351 157 36 chr12 35891643 35891891 -107894564 + L2 LINE L2 156 433 -2881 267 259 80 62 chr12 35892239 35892351 -107894104 + L2 LINE L2 2276 2389 -925 596 98 0 43 chr12 35892352 35892468 -107893987 + FRAM SINE Alu 59 170 0 449 204 0 0 chr12 35893145 35893233 -107893222 + L2 LINE L2 818 905 -2409 694 332 35 14 chr12 35893250 35893533 -107892922 + L2 LINE L2 1145 1433 -1881 377 289 35 0 chr12 35893536 35893650 -107892805 - L2 LINE L2 -1621 1693 1576 21 0 0 0 chr12 35894040 35894061 -107892394 + AT_rich Low_complexity Low_complexity 1 21 0 340 374 24 15 chr12 35894297 35894503 -107891952 - HAL1b LINE L1 -659 689 482 1182 198 132 40 chr12 35894755 35895028 -107891427 + AluJo SINE Alu 1 298 -4 22 0 0 0 chr12 35895247 35895269 -107891186 + AT_rich Low_complexity Low_complexity 1 22 0 1534 97 5 0 chr12 35895500 35895696 -107890759 - AluSp SINE Alu -16 297 101 593 77 0 0 chr12 35897580 35897658 -107888797 - MADE1 DNA Mariner 0 80 3 16565 61 3 0 chr12 35897658 35899808 -107886647 + L1P LINE L1 914 3070 -3076 240 361 37 19 chr12 35900150 35900258 -107886197 + MIR SINE MIR 34 143 -119 240 170 0 0 chr12 35900700 35900747 -107885708 + Alu SINE Alu 254 300 -1 2608 205 68 27 chr12 35900864 35901352 -107885103 - L1MB8 LINE L1 0 6178 5711 2213 164 6 0 chr12 35901352 35901687 -107884768 + MER1B DNA MER1_type 1 337 0 2608 205 68 27 chr12 35901687 35902523 -107883932 - L1MB8 LINE L1 -467 5711 4758 2111 134 3 3 chr12 35902682 35902987 -107883468 + AluSx SINE Alu 1 305 -7 602 326 61 13 chr12 35902997 35903631 -107882824 - L1ME3A LINE L1 -310 5860 5194 995 127 16 42 chr12 35903636 35903825 -107882630 - FRAM SINE Alu 0 176 1 363 301 124 13 chr12 35904436 35904589 -107881866 - MIR SINE MIR -11 251 82 1747 162 3 0 chr12 35904599 35904883 -107881572 - MER34C LTR ERV1 -289 296 12 2212 117 43 64 chr12 35905409 35905828 -107880627 - LTR23 LTR ERV1 -24 413 4 1598 229 32 87 chr12 35906478 35907125 -107879330 + LTR9 LTR ERV1 1 612 0 348 336 168 38 chr12 35907745 35908358 -107878097 - L2 LINE L2 -1904 1410 718 200 184 0 0 chr12 35908628 35908666 -107877789 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 187 247 24 82 chr12 35908909 35908994 -107877461 + L2 LINE L2 1153 1232 -2082 22 35 0 0 chr12 35909116 35909145 -107877310 + AT_rich Low_complexity Low_complexity 1 29 0 1057 273 62 67 chr12 35909382 35909847 -107876608 - MLT1J LTR MaLR -42 469 7 22 35 0 0 chr12 35909978 35910007 -107876448 + AT_rich Low_complexity Low_complexity 1 29 0 398 300 21 7 chr12 35910007 35910147 -107876308 + HsTC2 DNA Tc2 4 145 -1753 2076 235 73 19 chr12 35910155 35910743 -107875712 + HsTC2 DNA Tc2 1274 1893 -5 336 242 0 0 chr12 35910906 35910972 -107875483 + L2 LINE L2 3243 3308 -5 265 268 82 21 chr12 35912350 35912447 -107874008 + MIR SINE MIR 42 144 -64 314 231 77 115 chr12 35912941 35912968 -107873487 - L2 LINE L2 0 3313 3286 2219 99 3 7 chr12 35912968 35913270 -107873185 + AluSp SINE Alu 1 301 -12 314 231 77 115 chr12 35913270 35913372 -107873083 - L2 LINE L2 -27 3286 3189 834 153 90 37 chr12 35918961 35919150 -107867305 - AluJo SINE Alu -113 199 1 2380 92 0 6 chr12 35921187 35921523 -107864932 - AluSq SINE Alu 0 334 1 999 281 102 52 chr12 35921524 35922340 -107864115 - HAL1 LINE L1 -1021 1486 630 357 263 77 94 chr12 35922363 35922885 -107863570 - HAL1 LINE L1 -1953 554 42 224 311 48 39 chr12 35922942 35923045 -107863410 + L2 LINE L2 2727 2830 -484 304 319 44 9 chr12 35923137 35923250 -107863205 + L2 LINE L2 3197 3313 0 2268 140 22 0 chr12 35923333 35923689 -107862766 - THE1B LTR MaLR 0 364 1 591 318 50 14 chr12 35923983 35924203 -107862252 - MIR SINE MIR -33 229 2 750 181 6 6 chr12 35924557 35924723 -107861732 - L1MA9 LINE L1 0 6312 6147 12812 108 41 122 chr12 35924746 35925705 -107860750 - Tigger1 DNA MER2_type 0 2418 1383 2166 134 6 0 chr12 35925705 35926041 -107860414 + L1PA16 LINE L1 5828 6165 -1 12812 108 41 122 chr12 35926041 35927080 -107859375 - Tigger1 DNA MER2_type -1035 1383 261 1987 144 0 0 chr12 35927080 35927372 -107859083 + AluSx SINE Alu 1 292 -20 12812 108 41 122 chr12 35927372 35927655 -107858800 - Tigger1 DNA MER2_type -2157 261 375 2195 171 35 26 chr12 35927655 35928077 -107858378 - MSTB LTR MaLR 0 426 1 12812 108 41 122 chr12 35928077 35928425 -107858030 - Tigger1 DNA MER2_type -2042 376 1 450 141 0 0 chr12 35928428 35928499 -107857956 - L1MA9 LINE L1 -184 6128 6058 256 237 48 29 chr12 35928519 35928651 -107857804 - L1ME LINE L1 -298 5823 5687 32 43 0 0 chr12 35928919 35928965 -107857490 + AT_rich Low_complexity Low_complexity 1 46 0 1011 211 0 0 chr12 35929006 35929186 -107857269 - MER5A DNA MER1_type -7 182 3 250 343 27 34 chr12 35929366 35929512 -107856943 + MIR SINE MIR 72 216 -46 267 341 81 16 chr12 35929867 35929990 -107856465 + L2 LINE L2 3111 3241 -31 4496 211 47 15 chr12 35930559 35932526 -107853929 + L1MB7 LINE L1 4151 6184 0 32 43 0 0 chr12 35932574 35932620 -107853835 + AT_rich Low_complexity Low_complexity 1 46 0 239 351 26 9 chr12 35933620 35933734 -107852721 - MER5A DNA MER1_type -20 169 54 27 29 0 0 chr12 35934048 35934082 -107852373 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35934277 35934326 -107852129 + AT_rich Low_complexity Low_complexity 1 49 0 277 258 82 21 chr12 35935201 35935298 -107851157 + MIR SINE MIR 42 144 -64 334 301 27 22 chr12 35936711 35936894 -107849561 + L1ME LINE L1 5634 5817 -304 11835 161 85 13 chr12 35936895 35939411 -107847044 + L1MB7 LINE L1 4 2699 -3683 6964 228 55 22 chr12 35939381 35940942 -107845513 + L1MB7 LINE L1 3457 5097 -1285 * 2149 117 0 3 chr12 35940942 35941255 -107845200 + AluSx SINE Alu 5 312 0 6964 228 55 22 chr12 35941255 35941641 -107844814 + L1MB7 LINE L1 5097 5469 -913 838 210 70 11 chr12 35941848 35942157 -107844298 - MLT1A1 LTR MaLR -1 364 1 316 286 186 45 chr12 35942164 35942384 -107844071 + MIR SINE MIR 5 255 -7 31254 108 18 59 chr12 35943075 35949493 -107836962 + L1PA7 LINE L1 12 6154 0 345 212 94 0 chr12 35949870 35949955 -107836500 - L2 LINE L2 0 3313 3221 2640 199 38 19 chr12 35949955 35950583 -107835872 + L1MB7 LINE L1 5781 6420 0 233 313 45 36 chr12 35950583 35950695 -107835760 - L2 LINE L2 -8 3305 3193 1258 189 121 29 chr12 35951337 35951644 -107834811 + MLT2C1 LTR ERVL 6 340 -57 2114 178 43 0 chr12 35951682 35952139 -107834316 + HERVL LTR ERVL 1972 2443 -3321 240 184 0 0 chr12 35952139 35952188 -107834267 + (TG)n Simple_repeat Simple_repeat 2 50 0 298 319 37 44 chr12 35952195 35952330 -107834125 - MIR SINE MIR -104 158 25 22 35 0 0 chr12 35952832 35952861 -107833594 + AT_rich Low_complexity Low_complexity 1 29 0 522 0 0 0 chr12 35952980 35953038 -107833417 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 27 29 0 0 chr12 35953517 35953551 -107832904 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35953747 35953796 -107832659 + AT_rich Low_complexity Low_complexity 1 49 0 4340 221 135 21 chr12 35954781 35956509 -107829946 + L1M4 LINE L1 830 2751 -3895 320 104 21 0 chr12 35956509 35956557 -107829898 + MSTB2 LTR MaLR 408 456 -1 4194 249 82 52 chr12 35956557 35958241 -107828214 + MLT1A1-int LTR MaLR 2 1735 0 1278 207 50 94 chr12 35958241 35958622 -107827833 + MLT1A1 LTR MaLR 1 364 -1 8598 256 47 11 chr12 35958655 35961598 -107824857 + L1M4 LINE L1 2798 5845 -812 3952 178 47 25 chr12 35961606 35962436 -107824019 + L1MB5 LINE L1 5281 6134 -40 1719 183 7 10 chr12 35962436 35962731 -107823724 + AluJb SINE Alu 1 294 -18 3952 178 47 25 chr12 35962731 35962765 -107823690 + L1MB5 LINE L1 6134 6166 -8 723 266 42 55 chr12 35962848 35963137 -107823318 - LTR41 LTR ERVL -14 759 475 339 229 66 25 chr12 35963298 35963420 -107823035 - LTR41 LTR ERVL -646 127 1 543 302 57 77 chr12 35964859 35965329 -107821126 + L2 LINE L2 2853 3313 0 2322 97 0 10 chr12 35965907 35966217 -107820238 + AluSc SINE Alu 3 309 0 250 287 47 23 chr12 35966536 35966665 -107819790 - MER74B LTR ERVL -77 545 414 407 306 81 19 chr12 35967661 35967919 -107818536 + L1M4 LINE L1 2341 2614 -3532 455 245 87 21 chr12 35968120 35968406 -107818049 + L1M4 LINE L1 2860 3164 -2982 207 0 0 0 chr12 35968460 35968483 -107817972 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1891 188 39 0 chr12 35968503 35968838 -107817617 + MER7A DNA MER2_type 1 346 0 291 220 33 33 chr12 35968838 35968920 -107817535 + L1MEc LINE L1 115 199 -6197 411 286 43 33 chr12 35969178 35969454 -107817001 + L1M4 LINE L1 3608 3886 -2260 13686 190 27 43 chr12 35969460 35972867 -107813588 + L1M1 LINE L1 13 3783 -3782 30366 105 10 32 chr12 35972875 35977034 -107809421 + L1PA7 LINE L1 1 4038 -2431 1878 149 24 0 chr12 35977034 35977323 -107809132 + AluSg SINE Alu 1 296 -14 30366 105 10 32 chr12 35977323 35979699 -107806756 + L1PA7 LINE L1 4038 6465 -4 1500 261 21 13 chr12 35979695 35980167 -107806288 + L1M1 LINE L1 3769 4244 -3321 * 2620 138 9 0 chr12 35980165 35980607 -107805848 - L1 LINE L1 -1191 4955 4510 1947 136 3 3 chr12 35980607 35980902 -107805553 - AluSx SINE Alu -12 300 6 10314 239 49 25 chr12 35980947 35981300 -107805155 - L1MB1 LINE L1 -1 7586 7243 186 43 0 0 chr12 35981300 35981323 -107805132 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 10314 239 49 25 chr12 35981323 35982566 -107803889 - L1MB1 LINE L1 -344 7243 6032 2044 116 10 3 chr12 35982566 35982858 -107803597 - AluSg SINE Alu -16 294 1 10314 239 49 25 chr12 35982858 35984217 -107802238 - L1MB1 LINE L1 -1555 6032 4708 2313 96 0 0 chr12 35984217 35984520 -107801935 - AluY SINE Alu -8 303 1 10314 239 49 25 chr12 35984520 35986488 -107799967 - L1MB1 LINE L1 -2879 4708 2531 12809 214 48 28 chr12 35986496 35987032 -107799423 + L1MA9 LINE L1 2871 3395 -4336 1151 207 4 0 chr12 35987032 35987264 -107799191 + MER46A DNA MER2_type 4 236 0 12809 214 48 28 chr12 35987264 35990473 -107795982 + L1MA9 LINE L1 3395 6758 -973 195 42 0 0 chr12 35990473 35990497 -107795958 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 12809 214 48 28 chr12 35990497 35991478 -107794977 + L1MA9 LINE L1 6758 7718 -13 1985 220 24 47 chr12 35992085 35992639 -107793816 + L1MA10 LINE L1 5787 6327 -7 23 0 0 0 chr12 35993399 35993422 -107793033 + AT_rich Low_complexity Low_complexity 1 23 0 6024 84 5 10 chr12 35993919 35995041 -107791414 - L1PA14 LINE L1 0 6161 5077 2114 133 19 32 chr12 35995041 35995410 -107791045 + THE1B LTR MaLR 1 364 0 6024 84 5 10 chr12 35995410 35996205 -107790250 - L1PA14 LINE L1 -1084 5077 4279 232 283 158 33 chr12 35996741 35996861 -107789594 + LTR50 LTR ERVL 18 152 -643 502 262 55 6 chr12 35996865 35997029 -107789426 - MER5B DNA MER1_type -2 176 5 418 318 126 35 chr12 35997161 35997422 -107789033 + LTR50 LTR ERVL 353 637 -158 260 250 24 0 chr12 35998799 35998883 -107787572 + (TA)n Simple_repeat Simple_repeat 1 86 0 267 140 35 18 chr12 36000138 36000195 -107786260 + HSMAR1 DNA Mariner 1230 1287 0 217 0 0 57 chr12 36002456 36002491 -107783964 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 37310 91 9 7 chr12 36002534 36008635 -107777820 + L1PA6 LINE L1 32 6148 -6 220 235 53 129 chr12 36010193 36010259 -107776196 + MIR SINE MIR 50 119 -143 180 0 0 0 chr12 36010259 36010279 -107776176 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1908 150 4 0 chr12 36010284 36010564 -107775891 - AluSx SINE Alu -23 289 9 220 235 53 129 chr12 36010564 36010661 -107775794 + MIR SINE MIR 123 206 -56 200 320 0 0 chr12 36010801 36010851 -107775604 - L2 LINE L2 -6 3266 3217 347 333 27 20 chr12 36010896 36011043 -107775412 - MIR3 SINE MIR -3 205 58 2155 109 7 10 chr12 36012213 36012515 -107773940 + AluSx SINE Alu 1 301 -11 210 333 245 0 chr12 36012524 36012761 -107773694 - L2 LINE L2 -775 2539 2245 893 283 71 36 chr12 36012782 36013146 -107773309 + MLT1G LTR MaLR 13 389 -201 2042 128 40 0 chr12 36013408 36013705 -107772750 + AluSg SINE Alu 1 309 -1 321 26 0 0 chr12 36015487 36015525 -107770930 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1929 132 0 11 chr12 36015688 36015993 -107770462 + AluSx SINE Alu 5 306 0 256 148 0 0 chr12 36016304 36016320 -107770135 - LTR66 LTR ERVL -156 454 439 315 0 0 0 chr12 36016320 36016355 -107770100 + (TC)n Simple_repeat Simple_repeat 2 36 0 256 148 0 0 chr12 36016355 36016399 -107770056 - LTR66 LTR ERVL -170 440 394 264 122 0 0 chr12 36016413 36016454 -107770001 + (TA)n Simple_repeat Simple_repeat 1 41 0 287 304 30 101 chr12 36016567 36016735 -107769720 - L2 LINE L2 -1 3271 3116 361 224 0 0 chr12 36017241 36017317 -107769138 - MER34C LTR ERV1 -355 230 155 284 250 46 46 chr12 36017388 36017496 -107768959 - MER57A-int LTR ERV1 -4123 3414 3307 4760 153 34 16 chr12 36017558 36018381 -107768074 - MER57A-int LTR ERV1 -6695 842 5 645 169 0 25 chr12 36018384 36018502 -107767953 - MER57A LTR ERV1 0 403 289 34 24 0 0 chr12 36019378 36019419 -107767036 + AT_rich Low_complexity Low_complexity 1 41 0 1255 65 60 5 chr12 36019440 36019624 -107766831 - L1PA7 LINE L1 -17 6137 5944 1378 142 69 88 chr12 36021010 36021327 -107765128 - AluJo SINE Alu -1 311 1 1322 70 55 5 chr12 36021795 36021996 -107764459 + L1PA7 LINE L1 5944 6154 0 229 0 54 27 chr12 36022001 36022038 -107764417 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 284 278 93 62 chr12 36022796 36022958 -107763497 - MIR SINE MIR -73 189 23 4697 193 31 34 chr12 36023274 36024749 -107761706 + L1MB2 LINE L1 4143 5613 -558 1985 160 24 3 chr12 36024751 36025083 -107761372 + MER7A DNA MER2_type 3 339 -7 2545 180 75 0 chr12 36025084 36025606 -107760849 + L1MB2 LINE L1 5611 6171 0 2596 139 24 5 chr12 36026417 36026835 -107759620 - MSTB LTR MaLR 0 426 1 223 233 101 101 chr12 36026929 36027058 -107759397 - L2 LINE L2 -40 3273 3145 1509 277 105 44 chr12 36027374 36028261 -107758194 + L2 LINE L2 2333 3263 -50 2223 88 62 0 chr12 36028295 36028615 -107757840 + L1PA16 LINE L1 5818 6157 -9 228 269 0 0 chr12 36030026 36030078 -107756377 + MER94 DNA DNA 1 52 -82 22 35 0 0 chr12 36031326 36031355 -107755100 + AT_rich Low_complexity Low_complexity 1 29 0 4097 240 64 58 chr12 36031355 36031977 -107754478 - L1ME1 LINE L1 0 6291 5674 2143 120 47 33 chr12 36031977 36032336 -107754119 + THE1B LTR MaLR 1 364 0 11024 98 28 1 chr12 36032336 36033874 -107752581 + THE1B-int LTR MaLR 1 1580 0 2071 111 62 28 chr12 36033874 36034226 -107752229 + THE1B LTR MaLR 1 364 0 4097 240 64 58 chr12 36034226 36036140 -107750315 - L1ME1 LINE L1 -616 5675 3786 21 57 0 0 chr12 36036503 36036538 -107749917 + AT_rich Low_complexity Low_complexity 1 35 0 767 186 4 31 chr12 36036542 36036753 -107749702 - L1MC/D LINE L1 -710 5456 5257 1845 182 22 71 chr12 36037934 36038148 -107748307 - MER31A LTR ERV1 0 485 262 3328 87 11 4 chr12 36038148 36038598 -107747857 + MLT2A2 LTR ERVL 1 453 0 1845 182 22 71 chr12 36038598 36038893 -107747562 - MER31A LTR ERV1 -223 262 1 1621 204 39 75 chr12 36038944 36039360 -107747095 + LTR8 LTR ERV1 1 401 -290 320 356 49 0 chr12 36039421 36039584 -107746871 + MIR SINE MIR 82 252 -10 377 317 60 49 chr12 36040087 36040270 -107746185 + MER5A DNA MER1_type 5 189 0 318 283 22 16 chr12 36041432 36041538 -107744917 + MIR SINE MIR 13 118 -90 21 0 0 0 chr12 36042150 36042171 -107744284 + AT_rich Low_complexity Low_complexity 1 21 0 303 250 0 0 chr12 36042300 36042364 -107744091 - MIR SINE MIR -78 184 121 1415 146 35 17 chr12 36042417 36042925 -107743530 - LTR36 LTR ERV1 -30 581 9 1708 302 47 39 chr12 36042965 36043959 -107742496 + L1MA5 LINE L1 1 1910 -5299 1156 180 40 0 chr12 36043954 36044226 -107742229 + L1MA5 LINE L1 4016 4298 -2910 * 6350 142 15 26 chr12 36044233 36045712 -107740743 + L1MA5 LINE L1 5903 7357 -5 1846 142 45 54 chr12 36046041 36046693 -107739762 - Tigger3b DNA MER2_type -506 726 2 642 196 0 0 chr12 36046696 36046808 -107739647 - MLT1E3 LTR MaLR -504 120 9 24 32 0 0 chr12 36046893 36046924 -107739531 + AT_rich Low_complexity Low_complexity 1 31 0 198 224 41 20 chr12 36047870 36047919 -107738536 - L2 LINE L2 -13 3259 3210 575 289 63 20 chr12 36048149 36048499 -107737956 - L1M4 LINE L1 -2445 3701 3337 1743 149 54 69 chr12 36048693 36049101 -107737354 - L1MA9 LINE L1 0 6312 5911 6208 161 10 3 chr12 36049101 36051249 -107735206 + L1PB1 LINE L1 3985 6149 -2 262 113 19 19 chr12 36051675 36051728 -107734727 + (TA)n Simple_repeat Simple_repeat 1 53 0 550 157 0 29 chr12 36051829 36051931 -107734524 + Tigger5 DNA MER2_type 2225 2323 0 23 54 0 0 chr12 36052021 36052058 -107734397 + AT_rich Low_complexity Low_complexity 1 37 0 240 258 0 0 chr12 36052635 36052701 -107733754 - LTR37B LTR ERV1 -166 302 237 1484 251 84 25 chr12 36052736 36053211 -107733244 - LTR40a LTR ERVL -1 518 16 884 266 58 9 chr12 36053217 36053543 -107732912 - HERVL40 LTR ERVL -11 5519 2786 428 330 27 0 chr12 36053582 36053770 -107732685 - MER89-int LTR ERV1 -491 6310 6118 2040 286 58 30 chr12 36054520 36055508 -107730947 - HERVL40 LTR ERVL -882 4648 3603 706 224 25 151 chr12 36055514 36056024 -107730431 + L1M3 LINE L1 2884 3329 -2817 592 132 11 0 chr12 36056030 36056121 -107730334 + U6 snRNA snRNA 12 103 -4 14051 179 14 24 chr12 36056123 36059933 -107726522 + L1PA13 LINE L1 2397 6163 0 2219 228 18 21 chr12 36059936 36060551 -107725904 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 36060554 36061089 -107725366 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 36061155 36061208 -107725247 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 36061318 36061339 -107725116 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 36063656 36063837 -107722618 - MIR SINE MIR -70 192 6 440 354 109 30 chr12 36064141 36064537 -107721918 + L2 LINE L2 2887 3313 0 2322 42 24 0 chr12 36065261 36065549 -107720906 - AluY SINE Alu -16 295 1 330 411 31 8 chr12 36067562 36067691 -107718764 - L2 LINE L2 -7 3265 3134 21 36 0 0 chr12 36067710 36067738 -107718717 + AT_rich Low_complexity Low_complexity 1 28 0 213 227 0 0 chr12 36067741 36067785 -107718670 - L2 LINE L2 0 3313 3270 2210 280 84 51 chr12 36068612 36069780 -107716675 - L2 LINE L2 -78 3235 2032 623 359 31 34 chr12 36071233 36071615 -107714840 - L2 LINE L2 -920 2394 2014 549 343 37 59 chr12 36071667 36072203 -107714252 - L2 LINE L2 -8 3264 2749 262 318 161 5 chr12 36072230 36072276 -107714179 - L2 LINE L2 -1226 2088 2051 342 45 0 0 chr12 36072276 36072320 -107714135 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 318 161 5 chr12 36072320 36072465 -107713990 - L2 LINE L2 -1263 2051 1867 255 242 209 13 chr12 36073221 36073374 -107713081 - L2 LINE L2 -4 3309 3127 937 320 79 46 chr12 36073678 36074275 -107712180 - L2 LINE L2 -40 3273 2697 441 254 73 49 chr12 36074275 36074480 -107711975 + MER63A DNA MER1_type 1 210 0 937 320 79 46 chr12 36074480 36074678 -107711777 - L2 LINE L2 -616 2697 2507 2153 196 31 17 chr12 36074678 36075157 -107711298 + MER66B LTR ERV1 1 486 0 937 320 79 46 chr12 36075157 36075367 -107711088 - L2 LINE L2 -806 2507 2222 412 335 55 15 chr12 36076149 36076349 -107710106 + Charlie8 DNA MER1_type 6 213 -2204 2268 176 21 32 chr12 36076408 36076874 -107709581 + MER65C LTR ERV1 1 461 0 296 197 0 56 chr12 36076947 36077018 -107709437 + Charlie8 DNA MER1_type 1345 1411 -1006 403 237 98 127 chr12 36077334 36077486 -107708969 - LTR50 LTR ERVL -24 771 627 2033 128 0 4 chr12 36077486 36077767 -107708688 + AluSx SINE Alu 1 280 -32 403 237 98 127 chr12 36077767 36077859 -107708596 - LTR50 LTR ERVL -168 627 534 272 129 0 29 chr12 36077859 36077929 -107708526 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1144 208 216 31 chr12 36077934 36078420 -107708035 - LTR50 LTR ERVL -213 582 7 301 312 70 50 chr12 36078604 36079007 -107707448 - MLT1J LTR MaLR -58 453 9 359 289 22 0 chr12 36079701 36079791 -107706664 + L2 LINE L2 3181 3272 0 243 65 0 0 chr12 36080973 36081004 -107705451 + L1PBa LINE L1 2929 2959 -3904 371 322 159 56 chr12 36081210 36081892 -107704563 - L2 LINE L2 -213 3059 2300 2809 271 84 36 chr12 36083084 36084411 -107702044 + L1MEc LINE L1 37 1426 -4970 1145 261 73 0 chr12 36084418 36084842 -107701613 + L1MEc LINE L1 2178 2595 -3620 1203 241 26 9 chr12 36084852 36085201 -107701254 + L1MEc LINE L1 2639 2993 -3222 622 257 22 64 chr12 36085333 36085771 -107700684 + L1ME1 LINE L1 5760 6331 -3 335 341 24 0 chr12 36086271 36086394 -107700061 + L2 LINE L2 3188 3313 0 192 77 0 0 chr12 36086454 36086480 -107699975 + (CAG)n Simple_repeat Simple_repeat 1 26 0 252 396 29 39 chr12 36086702 36086909 -107699546 + L2 LINE L2 2745 2949 -365 2291 66 26 7 chr12 36086915 36087220 -107699235 - AluY SINE Alu 0 311 1 216 250 0 0 chr12 36087309 36087349 -107699106 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr12 36087808 36087833 -107698622 + AT_rich Low_complexity Low_complexity 1 25 0 195 190 0 0 chr12 36087833 36087891 -107698564 + (TA)n Simple_repeat Simple_repeat 2 59 0 255 141 14 28 chr12 36087924 36087995 -107698460 + CT-rich Low_complexity Low_complexity 1 70 0 2218 104 36 28 chr12 36088887 36089243 -107697212 + THE1B LTR MaLR 3 361 -3 1574 86 0 5 chr12 36090157 36090377 -107696078 - L1PA7 LINE L1 -2 6152 5934 224 366 113 32 chr12 36090527 36090713 -107695742 - MIR3 SINE MIR -3 205 5 6782 68 6 1 chr12 36092426 36093370 -107693085 + L1PA7 LINE L1 5206 6153 -1 1173 147 32 0 chr12 36095228 36095446 -107691009 + L1MA8 LINE L1 6065 6289 -2 1845 249 83 25 chr12 36095459 36096106 -107690349 + L1MC4 LINE L1 7185 7869 -173 244 285 31 54 chr12 36096823 36096953 -107689502 + L2 LINE L2 2199 2325 -989 2528 102 11 6 chr12 36097124 36097486 -107688969 + THE1B LTR MaLR 1 364 0 9791 124 21 31 chr12 36097486 36098245 -107688210 + THE1B-int LTR MaLR 1 766 -814 2304 62 0 80 chr12 36098245 36098582 -107687873 + AluY SINE Alu 1 310 -1 9791 124 21 31 chr12 36098582 36099418 -107687037 + THE1B-int LTR MaLR 766 1580 0 2337 106 49 9 chr12 36099420 36099768 -107686687 + THE1B LTR MaLR 3 364 0 382 339 45 38 chr12 36101201 36101490 -107684965 + L1MEd LINE L1 670 960 -5159 843 129 0 43 chr12 36101617 36101756 -107684699 + FLAM_C SINE Alu 1 133 0 283 328 30 38 chr12 36101842 36101973 -107684482 - MIR SINE MIR -73 189 60 877 251 122 57 chr12 36102502 36102920 -107683535 - LTR16A1 LTR ERVL -5 452 8 1757 129 85 0 chr12 36103700 36103972 -107682483 + AluSx SINE Alu 1 295 -17 32 57 0 0 chr12 36104224 36104277 -107682178 + AT_rich Low_complexity Low_complexity 1 53 0 296 332 90 41 chr12 36104539 36104807 -107681648 + L3 LINE CR1 1011 1291 -286 369 62 0 0 chr12 36104905 36104953 -107681502 + (TG)n Simple_repeat Simple_repeat 1 48 0 334 299 46 0 chr12 36105047 36105134 -107681321 - L2 LINE L2 -15 3298 3208 27 81 0 0 chr12 36106019 36106081 -107680374 + AT_rich Low_complexity Low_complexity 1 62 0 430 36 0 0 chr12 36106249 36106305 -107680150 + L1PA6 LINE L1 6099 6154 0 770 100 15 8 chr12 36106314 36106444 -107680011 + L1PA13 LINE L1 6026 6156 -7 1753 158 22 4 chr12 36106480 36106753 -107679702 + AluJb SINE Alu 1 278 -34 2183 99 0 7 chr12 36106780 36107073 -107679382 - AluSp SINE Alu -22 291 1 421 283 158 0 chr12 36107814 36107991 -107678464 - MIR SINE MIR -48 214 10 257 329 88 60 chr12 36108101 36108317 -107678138 - L2 LINE L2 -37 3235 3014 1154 128 30 0 chr12 36108341 36108544 -107677911 - L1MA8 LINE L1 -7 6284 6076 335 106 76 15 chr12 36108544 36108610 -107677845 + L1M2 LINE L1 5747 5816 -484 536 365 63 34 chr12 36108610 36109280 -107677175 - L2 LINE L2 -254 3018 2254 885 256 84 12 chr12 36109337 36109658 -107676797 - MER2 DNA MER2_type 0 344 1 307 283 22 7 chr12 36110464 36110602 -107675853 + (TA)n Simple_repeat Simple_repeat 1 140 0 2092 50 7 28 chr12 36112251 36112533 -107673922 + AluY SINE Alu 35 310 -1 2260 101 3 0 chr12 36113160 36113467 -107672988 + AluSg SINE Alu 1 308 -2 378 346 21 16 chr12 36114272 36114460 -107671995 + MER89-int LTR ERV1 2017 2205 -2442 322 301 120 0 chr12 36114879 36115012 -107671443 + MER89-int LTR ERV1 4988 5136 -1665 2471 61 0 0 chr12 36115401 36115697 -107670758 + AluY SINE Alu 1 296 -15 1342 179 50 36 chr12 36115941 36116245 -107670210 + AluJb SINE Alu 1 308 0 2218 85 0 0 chr12 36116739 36117067 -107669388 + AluY SINE Alu 1 328 0 225 0 0 0 chr12 36117310 36117335 -107669120 + (T)n Simple_repeat Simple_repeat 1 25 0 781 95 0 0 chr12 36117335 36117451 -107669004 - LTR9B LTR ERV1 -84 560 445 873 262 103 59 chr12 36117845 36118363 -107668092 - L2 LINE L2 -1 3312 2776 22 70 0 0 chr12 36118490 36118533 -107667922 + AT_rich Low_complexity Low_complexity 1 43 0 527 267 64 32 chr12 36118797 36118880 -107667575 + MIR SINE MIR 70 149 -113 3093 156 135 5 chr12 36118880 36119502 -107666953 + MER39 LTR ERV1 1 703 -4 527 267 64 32 chr12 36119502 36119605 -107666850 + MIR SINE MIR 149 262 0 28 91 0 0 chr12 36120601 36120678 -107665777 + AT_rich Low_complexity Low_complexity 1 77 0 2120 238 79 4 chr12 36122755 36123460 -107662995 - L1M4 LINE L1 -2886 3260 2503 252 262 60 0 chr12 36123848 36123932 -107662523 + L1ME LINE L1 5738 5826 -295 21 0 0 0 chr12 36124014 36124035 -107662420 + AT_rich Low_complexity Low_complexity 1 21 0 471 320 39 28 chr12 36124498 36124676 -107661779 + MIR SINE MIR 12 191 -71 22 70 0 0 chr12 36124872 36124915 -107661540 + AT_rich Low_complexity Low_complexity 1 43 0 212 278 14 0 chr12 36125452 36125524 -107660931 + (TA)n Simple_repeat Simple_repeat 2 74 0 339 285 33 53 chr12 36126425 36126576 -107659879 + L1MEc LINE L1 1508 1655 -4741 302 279 47 0 chr12 36126629 36126758 -107659697 + L1MEc LINE L1 1669 1803 -4593 21 0 0 0 chr12 36127238 36127259 -107659196 + AT_rich Low_complexity Low_complexity 1 21 0 1807 83 34 19 chr12 36127530 36127796 -107658659 - L1PA7 LINE L1 -1 6153 5884 3395 131 22 16 chr12 36128431 36128980 -107657475 - L1PA15 LINE L1 -8 6157 5606 405 350 21 7 chr12 36128985 36129128 -107657327 - MIR3 SINE MIR -62 146 2 1554 225 40 0 chr12 36129197 36129548 -107656907 + MLT1A1 LTR MaLR 1 365 0 325 254 164 30 chr12 36130087 36130252 -107656203 + MER5A DNA MER1_type 1 187 -2 27 29 0 0 chr12 36130292 36130326 -107656129 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr12 36130342 36130371 -107656084 + AT_rich Low_complexity Low_complexity 1 29 0 315 339 39 39 chr12 36130923 36131050 -107655405 + LTR67 LTR ERVL 98 224 -333 3139 201 10 63 chr12 36131840 36132566 -107653889 - LTR8 LTR ERV1 -3 688 2 3014 40 0 21 chr12 36132568 36132948 -107653507 - L1PA5 LINE L1 0 6154 5783 325 250 134 0 chr12 36133180 36133292 -107653163 + L2 LINE L2 3183 3309 -4 293 370 55 8 chr12 36133299 36133426 -107653029 + MER5A DNA MER1_type 56 188 -1 1866 160 35 0 chr12 36133471 36133759 -107652696 + AluSx SINE Alu 1 298 -14 757 279 50 46 chr12 36133793 36134116 -107652339 - MER93a LTR ERV1 -4 398 75 289 260 62 45 chr12 36134456 36134633 -107651822 - MER93b-int LTR ERV1 -667 7149 6970 22344 137 12 21 chr12 36135039 36139670 -107646785 + L1PA13 LINE L1 1575 6163 0 2269 223 18 21 chr12 36139673 36140288 -107646167 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 36140291 36140826 -107645629 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 36140892 36140945 -107645510 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 36141055 36141076 -107645379 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 36143394 36143575 -107642880 - MIR SINE MIR -70 192 6 421 354 109 30 chr12 36143879 36144275 -107642180 + L2 LINE L2 2887 3313 0 228 300 0 0 chr12 36144969 36145029 -107641426 + L2 LINE L2 2995 3054 -259 292 247 113 73 chr12 36145165 36145315 -107641140 + Charlie4 DNA MER1_type 3 158 -1803 1703 161 22 4 chr12 36146040 36146313 -107640142 + AluJb SINE Alu 1 278 -34 441 100 0 0 chr12 36146340 36146400 -107640055 - AluSp/q SINE Alu -22 291 232 1016 206 186 92 chr12 36147565 36148139 -107638316 - MER93b-int LTR ERV1 -203 4733 4106 2478 54 0 0 chr12 36148140 36148436 -107638019 + AluY SINE Alu 1 296 -15 1870 222 27 32 chr12 36148477 36149052 -107637403 - MER93b-int LTR ERV1 -1189 3747 3306 1900 209 124 107 chr12 36149078 36150111 -107636344 - MER93b-int LTR ERV1 -1786 3150 2100 2460 139 21 28 chr12 36150140 36150573 -107635882 + LTR10D LTR ERV1 84 513 0 633 219 5 37 chr12 36150697 36150884 -107635571 - MER93b-int LTR ERV1 -3072 1864 1684 381 171 92 53 chr12 36150979 36151131 -107635324 - MER93b-int LTR ERV1 -3140 3123 1476 21 57 0 0 chr12 36151165 36151200 -107635255 + AT_rich Low_complexity Low_complexity 1 35 0 285 107 92 0 chr12 36151200 36151331 -107635124 + (TA)n Simple_repeat Simple_repeat 1 143 0 382 220 99 42 chr12 36151335 36151560 -107634895 - MER93b-int LTR ERV1 -3771 1165 884 385 246 30 72 chr12 36152453 36152620 -107633835 - MER93b-int LTR ERV1 -7287 250 91 2645 42 0 0 chr12 36152621 36152932 -107633523 + AluY SINE Alu 1 311 0 525 287 65 19 chr12 36153051 36153267 -107633188 - MER93b LTR ERV1 -4 369 144 2308 81 13 0 chr12 36153269 36153576 -107632879 + AluSp SINE Alu 1 311 -2 312 288 81 0 chr12 36154447 36154558 -107631897 - L1ME LINE L1 -578 5584 5465 480 306 102 59 chr12 36154750 36155074 -107631381 - L1ME LINE L1 -2214 3932 3595 603 262 96 109 chr12 36155250 36155883 -107630572 - MLT2E LTR ERVL -3 625 1 445 299 76 82 chr12 36155907 36156563 -107629892 - L1M4 LINE L1 -2393 3753 3102 1938 253 50 30 chr12 36156959 36157361 -107629094 - L1ME3 LINE L1 -1 6161 5739 1909 174 50 31 chr12 36157361 36157781 -107628674 + MSTC LTR MaLR 1 428 0 1938 253 50 30 chr12 36157781 36158042 -107628413 - L1ME3 LINE L1 -423 5739 5485 225 304 0 43 chr12 36158058 36158127 -107628328 - MIR SINE MIR -1 261 196 1977 253 51 38 chr12 36158314 36159057 -107627398 - L1ME3A LINE L1 -111 6059 5307 1704 233 111 93 chr12 36159064 36160186 -107626269 - L1ME3A LINE L1 -913 5233 4092 372 237 126 35 chr12 36160186 36160384 -107626071 - L1ME3A LINE L1 -3449 2697 2482 245 224 30 0 chr12 36160384 36160451 -107626004 + L1MC4 LINE L1 6637 6705 -1337 299 363 34 7 chr12 36160741 36160887 -107625568 - L2 LINE L2 -678 2636 2487 363 297 225 10 chr12 36162213 36162422 -107624033 - MIR SINE MIR -2 260 7 1206 237 73 111 chr12 36163535 36163587 -107622868 + MLT1F1 LTR MaLR 3 55 -512 2394 82 0 0 chr12 36163587 36163880 -107622575 - AluSg SINE Alu -15 295 3 1206 237 73 111 chr12 36163880 36164091 -107622364 + MLT1F1 LTR MaLR 55 272 -295 1241 228 93 22 chr12 36164091 36164455 -107622000 - MLT1B LTR MaLR 0 390 1 1206 237 73 111 chr12 36164455 36164751 -107621704 + MLT1F1 LTR MaLR 272 567 0 246 275 35 106 chr12 36164841 36164884 -107621571 + LTR16A1 LTR ERVL 4 48 -409 1912 127 3 29 chr12 36164884 36165199 -107621256 - AluSx SINE Alu -5 307 1 246 275 35 106 chr12 36165199 36165297 -107621158 + LTR16A1 LTR ERVL 48 135 -322 326 61 20 0 chr12 36166546 36166595 -107619860 + (TG)n Simple_repeat Simple_repeat 2 51 0 1769 119 48 7 chr12 36168042 36168311 -107618144 + AluSx SINE Alu 28 307 -5 29 0 0 0 chr12 36168446 36168475 -107617980 + AT_rich Low_complexity Low_complexity 1 29 0 383 256 69 115 chr12 36169033 36169381 -107617074 - HAL1 LINE L1 -1233 1274 943 888 248 40 25 chr12 36170568 36170842 -107615613 + L1ME1 LINE L1 5614 5891 -275 224 304 38 25 chr12 36171031 36171110 -107615345 + L2 LINE L2 3185 3264 -8 1610 234 56 14 chr12 36171139 36171659 -107614796 + MLT1E LTR MaLR 13 585 -8 250 62 62 42 chr12 36171911 36171959 -107614496 + L1PA13 LINE L1 6114 6162 -1 184 333 64 0 chr12 36172441 36172519 -107613936 + MIR SINE MIR 102 184 -78 1811 132 53 4 chr12 36174732 36175013 -107611442 - AluJb SINE Alu -17 295 1 674 139 80 94 chr12 36176094 36176140 -107610315 + LTR37A LTR ERV1 1 46 -380 2474 47 0 3 chr12 36176140 36176441 -107610014 - AluY SINE Alu -11 300 1 674 139 80 94 chr12 36176441 36176595 -107609860 + LTR37A LTR ERV1 46 198 -228 1386 207 85 0 chr12 36176627 36176955 -107609500 + MER67C LTR ERV1 9 364 -346 213 290 0 32 chr12 36177093 36177155 -107609300 + CT-rich Low_complexity Low_complexity 5 64 0 4023 102 11 86 chr12 36177237 36177955 -107608500 + MER4A LTR ERV1 1 664 0 371 165 63 0 chr12 36178891 36178970 -107607485 - MER34 LTR ERV1 -1 541 458 299 196 0 0 chr12 36178964 36179015 -107607440 - MER39 LTR ERV1 -656 51 1 * 22 0 0 0 chr12 36179138 36179160 -107607295 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr12 36179504 36179543 -107606912 + AT_rich Low_complexity Low_complexity 1 39 0 253 265 75 35 chr12 36180194 36180394 -107606061 - L1ME4a LINE L1 -4 6117 5910 230 229 0 105 chr12 36180446 36180551 -107605904 - L1ME4a LINE L1 -213 5908 5815 2196 117 0 0 chr12 36180622 36180920 -107605535 - AluSq SINE Alu -15 298 1 395 253 0 0 chr12 36180926 36181017 -107605438 - L1ME4a LINE L1 -512 5609 5519 508 269 48 18 chr12 36181402 36181569 -107604886 + MLT1I LTR MaLR 3 174 -235 233 342 56 25 chr12 36181605 36181766 -107604689 + MLT1I LTR MaLR 244 409 0 3481 91 5 58 chr12 36182213 36182785 -107603670 + L1PA13 LINE L1 5620 6161 -2 311 250 93 73 chr12 36182789 36182962 -107603493 + MLT1G LTR MaLR 114 354 -236 1088 172 22 18 chr12 36182962 36183189 -107603266 - L1MB3 LINE L1 0 6183 5956 311 250 93 73 chr12 36183189 36183274 -107603181 + MLT1G LTR MaLR 354 436 -154 801 161 23 0 chr12 36183721 36183851 -107602604 + FLAM_C SINE Alu 1 133 -10 520 325 61 39 chr12 36184130 36184490 -107601965 + MLT1I LTR MaLR 42 409 0 1712 187 36 17 chr12 36185272 36185630 -107600825 - MLT1A1 LTR MaLR 0 365 1 206 277 0 31 chr12 36186543 36186608 -107599847 - L2 LINE L2 -1896 1418 1356 24 67 0 0 chr12 36187169 36187214 -107599241 + AT_rich Low_complexity Low_complexity 1 45 0 6705 135 7 16 chr12 36187219 36187394 -107599061 - L1MA2 LINE L1 0 6304 6129 2348 109 0 3 chr12 36187394 36187707 -107598748 - AluSp SINE Alu -1 312 1 6705 135 7 16 chr12 36187707 36189611 -107596844 - L1MA2 LINE L1 -175 6129 4243 1891 208 20 3 chr12 36189621 36189977 -107596478 - LTR3 LTR ERVK -70 362 1 371 167 0 15 chr12 36189991 36190057 -107596398 - HERVK14 LTR ERVK -61 5884 5820 1089 183 5 5 chr12 36190073 36190286 -107596169 - HERVK14 LTR ERVK -1758 5485 5273 586 114 0 0 chr12 36190287 36190375 -107596080 - AluY SINE Alu -223 88 1 481 244 25 8 chr12 36190376 36190495 -107595960 - L1MCa LINE L1 -4244 2182 2062 252 0 0 0 chr12 36191399 36191427 -107595028 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 273 262 130 63 chr12 36191967 36192260 -107594195 + Charlie8 DNA MER1_type 26 1428 -989 327 342 58 64 chr12 36193161 36193538 -107592917 + HAL1b LINE L1 538 912 -436 324 241 61 70 chr12 36194327 36194555 -107591900 + L1M4 LINE L1 2784 3009 -3137 21 57 0 0 chr12 36194575 36194610 -107591845 + AT_rich Low_complexity Low_complexity 1 35 0 439 268 31 31 chr12 36194610 36194737 -107591718 + L2 LINE L2 3187 3313 0 257 204 0 17 chr12 36195052 36195128 -107591327 + L1M4 LINE L1 5771 5845 -319 * 978 241 159 25 chr12 36195124 36195623 -107590832 + L1ME3 LINE L1 5270 5838 -324 383 320 125 0 chr12 36195638 36195838 -107590617 + L1ME3 LINE L1 5898 6122 -40 1844 245 26 32 chr12 36195953 36196491 -107589964 + L1ME1 LINE L1 5614 6148 -18 292 188 14 14 chr12 36196527 36196596 -107589859 + L1MA10 LINE L1 6236 6304 -30 * 1788 181 58 17 chr12 36196594 36197203 -107589252 - L1ME LINE L1 -626 5540 4902 261 155 17 17 chr12 36197207 36197265 -107589190 + L1ME3A LINE L1 6111 6168 -2 350 301 143 36 chr12 36198195 36198391 -107588064 + L1MC/D LINE L1 5509 5725 -2083 195 129 0 0 chr12 36198407 36198438 -107588017 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 304 297 54 9 chr12 36199931 36200042 -107586413 + MIR3 SINE MIR 89 204 -4 395 236 27 0 chr12 36200148 36200258 -107586197 - L1MC5 LINE L1 -48 7913 7801 625 249 121 8 chr12 36200296 36200545 -107585910 - L1MB8 LINE L1 -8 6170 5894 30 45 0 0 chr12 36201415 36201459 -107584996 + AT_rich Low_complexity Low_complexity 1 44 0 269 324 61 56 chr12 36202623 36202836 -107583619 - MIR SINE MIR -48 214 1 22 0 0 0 chr12 36202944 36202966 -107583489 + AT_rich Low_complexity Low_complexity 1 22 0 294 327 53 68 chr12 36203125 36203464 -107582991 - L2 LINE L2 -498 2816 2483 2158 119 0 0 chr12 36205716 36206010 -107580445 - AluSg SINE Alu -16 294 1 864 303 56 25 chr12 36206103 36206548 -107579907 - L1MEc LINE L1 -4583 1813 1355 719 208 63 79 chr12 36206543 36206923 -107579532 - L1MEc LINE L1 -3933 2463 2090 * 521 329 123 5 chr12 36207333 36207916 -107578539 - L1M4 LINE L1 -1198 4948 4297 211 225 0 0 chr12 36207997 36208037 -107578418 + (CATA)n Simple_repeat Simple_repeat 3 42 0 27 0 0 0 chr12 36209006 36209033 -107577422 + AT_rich Low_complexity Low_complexity 1 27 0 1487 60 0 37 chr12 36211859 36212075 -107574380 + L1PA5 LINE L1 5943 6150 -4 2561 174 131 30 chr12 36212253 36212857 -107573598 + MER39 LTR ERV1 16 680 -27 389 261 92 46 chr12 36214431 36214584 -107571871 - MER5B DNA MER1_type 0 178 19 330 277 47 61 chr12 36214584 36214732 -107571723 - MER5B DNA MER1_type -26 152 7 27 0 0 0 chr12 36214964 36214991 -107571464 + AT_rich Low_complexity Low_complexity 1 27 0 1125 229 100 32 chr12 36215059 36215430 -107571025 - MSTD LTR MaLR 0 396 1 256 312 13 0 chr12 36215452 36215529 -107570926 - MIR SINE MIR -57 151 74 2232 116 0 0 chr12 36216501 36216804 -107569651 - AluSx SINE Alu -9 303 1 276 236 14 28 chr12 36217319 36217391 -107569064 - L2 LINE L2 0 3313 3243 288 130 0 0 chr12 36218426 36218472 -107567983 + (CA)n Simple_repeat Simple_repeat 1 46 0 17197 127 8 3 chr12 36218746 36222258 -107564197 - L1PA8A LINE L1 -3 6128 2604 598 179 0 0 chr12 36222258 36222353 -107564102 - LTR12 LTR ERV1 -261 453 359 272 240 80 0 chr12 36222353 36222428 -107564027 - LTR30 LTR ERV1 -98 624 544 660 132 26 180 chr12 36222428 36222669 -107563786 - LTR12 LTR ERV1 -437 1523 100 232 269 0 0 chr12 36222669 36222721 -107563734 - LTR30 LTR ERV1 -670 52 1 8553 203 6 29 chr12 36222722 36224410 -107562045 - L1P LINE L1 -3506 2640 1003 216 67 0 0 chr12 36224410 36224440 -107562015 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8553 203 6 29 chr12 36224440 36224740 -107561715 - L1P LINE L1 -5143 1003 698 198 428 113 17 chr12 36226799 36227152 -107559303 + L2 LINE L2 2871 3257 -15 225 0 0 0 chr12 36227152 36227177 -107559278 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 193 148 0 0 chr12 36227390 36227417 -107559038 - L2 LINE L2 -20 3293 3267 22 0 0 0 chr12 36227453 36227475 -107558980 + AT_rich Low_complexity Low_complexity 1 22 0 872 238 155 26 chr12 36228441 36228937 -107557518 - L1MCa LINE L1 -5056 1885 1326 1800 191 36 3 chr12 36228987 36229374 -107557081 - L1MB4 LINE L1 0 6180 5781 217 143 36 18 chr12 36229374 36229424 -107557031 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 241 46 11 chr12 36229427 36229514 -107556941 + L1MC4 LINE L1 6613 6702 -1340 317 207 0 0 chr12 36229516 36229574 -107556881 - L1MB4 LINE L1 -384 5787 5730 631 271 98 11 chr12 36229583 36229849 -107556606 - L1MCa LINE L1 -5156 1267 979 11613 214 54 35 chr12 36230100 36230542 -107555913 + L1MA9 LINE L1 2983 3415 -4150 16200 25 1 0 chr12 36230542 36233221 -107553234 + L1PA2 LINE L1 3476 6155 0 11613 214 54 35 chr12 36233221 36233377 -107553078 + L1MA9 LINE L1 3415 3567 -3998 198 0 0 0 chr12 36233377 36233399 -107553056 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 11613 214 54 35 chr12 36233399 36236108 -107550347 + L1MA9 LINE L1 3567 6364 -1201 1794 161 0 7 chr12 36236108 36236420 -107550035 + AluSx SINE Alu 1 310 0 11613 214 54 35 chr12 36236420 36236835 -107549620 + L1MA9 LINE L1 6364 6770 -795 256 167 0 20 chr12 36236860 36236925 -107549530 + L1MA9 LINE L1 7315 7375 -335 242 128 0 0 chr12 36236942 36236981 -107549474 + L1MB1 LINE L1 5943 5981 -208 586 155 86 0 chr12 36236981 36237097 -107549358 + L1MA9 LINE L1 7362 7487 -244 1909 164 137 8 chr12 36237248 36237627 -107548828 + MSTA LTR MaLR 1 428 0 9009 146 23 24 chr12 36237629 36239209 -107547246 + MSTA-int LTR MaLR 3 1580 0 1283 187 83 37 chr12 36239209 36239557 -107546898 + THE1B LTR MaLR 1 364 0 333 325 69 75 chr12 36239902 36240278 -107546177 - L1MC4a LINE L1 -1908 5900 5527 204 261 0 15 chr12 36240571 36240636 -107545819 + CT-rich Low_complexity Low_complexity 2 65 0 1675 126 103 0 chr12 36242320 36242582 -107543873 + AluSc SINE Alu 1 289 -20 237 170 64 11 chr12 36244924 36245018 -107541437 + (TA)n Simple_repeat Simple_repeat 2 100 0 678 169 40 0 chr12 36245019 36245167 -107541288 + L1M LINE L1 5269 5422 -742 7294 41 1 1 chr12 36246241 36247370 -107539085 + L1PA4 LINE L1 5025 6153 -2 332 321 123 48 chr12 36247463 36247796 -107538659 - L1MC4a LINE L1 -1161 4985 4628 544 246 42 0 chr12 36247897 36248015 -107538440 + L1MD2 LINE L1 6000 6122 -237 5696 158 11 5 chr12 36248256 36249236 -107537219 - L1MC1 LINE L1 -9 6324 5339 2776 150 62 0 chr12 36249455 36249894 -107536561 + LTR28 LTR ERV1 1 466 -554 565 198 10 0 chr12 36249892 36249993 -107536462 + LTR28 LTR ERV1 919 1020 0 * 234 189 24 55 chr12 36251193 36251320 -107535135 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 27 29 0 0 chr12 36252415 36252449 -107534006 + AT_rich Low_complexity Low_complexity 1 34 0 2113 130 3 0 chr12 36252596 36252895 -107533560 - AluY SINE Alu -11 300 1 834 257 11 42 chr12 36253328 36253593 -107532862 + MER46C DNA MER2_type 66 322 -16 323 331 31 8 chr12 36253822 36253952 -107532503 + L2 LINE L2 2670 2802 -512 254 381 32 16 chr12 36253989 36254178 -107532277 + L2 LINE L2 2857 3048 -224 5671 146 31 18 chr12 36254462 36255703 -107530752 - L1MA6 LINE L1 0 6300 5046 2166 130 0 0 chr12 36255707 36256008 -107530447 - AluSq SINE Alu -12 301 1 2148 120 7 0 chr12 36257261 36257560 -107528895 - THE1B LTR MaLR -63 301 1 10088 116 25 41 chr12 36257560 36259166 -107527289 - THE1B-int LTR MaLR 0 1580 1 2264 146 6 0 chr12 36259166 36259528 -107526927 - THE1B LTR MaLR 0 364 1 1843 255 20 16 chr12 36259532 36259983 -107526472 + LTR40a LTR ERVL 67 519 0 2463 184 45 4 chr12 36260499 36261014 -107525441 - L1MB1 LINE L1 0 6168 5633 1634 183 0 0 chr12 36261209 36261498 -107524957 - L1PA15 LINE L1 -196 5969 5681 1077 217 18 0 chr12 36261493 36261719 -107524736 - L1PA15 LINE L1 -1166 4980 4751 * 774 316 120 40 chr12 36261716 36262559 -107523896 - L1PA13 LINE L1 -5360 1427 445 * 419 75 0 0 chr12 36262567 36262619 -107523836 - THE1B LTR MaLR 0 364 313 2501 78 11 242 chr12 36262619 36263066 -107523389 - LTR14B LTR ERVK 0 608 1 1832 145 45 10 chr12 36263066 36263376 -107523079 - THE1B LTR MaLR -43 321 1 2081 251 14 2 chr12 36263384 36263811 -107522644 - L1PA13 LINE L1 -6355 432 1 4900 211 23 11 chr12 36263825 36265022 -107521433 - L1 LINE L1 -2579 3567 2357 1384 206 99 14 chr12 36265024 36265389 -107521066 - MSTD LTR MaLR 0 396 1 5770 250 68 25 chr12 36265393 36266975 -107519480 - MSTD-int LTR MaLR -4 1731 83 589 172 152 0 chr12 36266971 36267116 -107519339 + L1MA9 LINE L1 6146 6312 0 * 495 176 0 0 chr12 36267273 36267358 -107519097 - MER67D LTR ERV1 -429 85 1 340 136 0 86 chr12 36267535 36267616 -107518839 + L1PA10 LINE L1 6095 6168 0 819 281 0 5 chr12 36267806 36268002 -107518453 + L1ME1 LINE L1 5967 6161 -5 23 0 0 0 chr12 36268333 36268356 -107518099 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 7 10 chr12 36268367 36268658 -107517797 + AluSc SINE Alu 1 290 -19 774 242 45 10 chr12 36268733 36268931 -107517524 + MLT1E3 LTR MaLR 1 205 -419 306 326 98 16 chr12 36269433 36269617 -107516838 - MLT1L LTR MaLR -221 394 196 2573 232 31 70 chr12 36270708 36271981 -107514474 + L1ME1 LINE L1 4942 6160 -6 1527 208 170 0 chr12 36272383 36272772 -107513683 + MSTB2 LTR MaLR 3 457 0 3104 173 28 33 chr12 36273604 36274327 -107512128 + MER54B LTR ERVL 3 793 0 388 261 168 26 chr12 36274440 36274666 -107511789 + L1ME3 LINE L1 5859 6116 -46 21 36 0 0 chr12 36274759 36274787 -107511668 + AT_rich Low_complexity Low_complexity 1 28 0 713 132 0 0 chr12 36275711 36275817 -107510638 - L1PA16 LINE L1 -171 5995 5890 973 183 0 27 chr12 36275817 36276002 -107510453 + L1PA16 LINE L1 5986 6166 0 267 343 28 56 chr12 36278215 36278358 -107508097 + MIR SINE MIR 20 158 -104 279 323 15 0 chr12 36278365 36278430 -107508025 + MIR SINE MIR 3 68 -194 11767 125 26 60 chr12 36278563 36281575 -107504880 - L1P3 LINE L1 -3444 3017 8 8705 182 19 8 chr12 36281698 36284236 -107502219 - L1PA13 LINE L1 -2 6161 3603 277 312 49 29 chr12 36284345 36284550 -107501905 - Tigger4(Zombi) DNA MER2_type -1332 1399 1191 390 306 92 30 chr12 36284776 36285112 -107501343 - Tigger4(Zombi) DNA MER2_type -1747 984 628 2858 66 129 2 chr12 36285630 36286024 -107500431 - MLT2A1 LTR ERVL 0 444 1 342 218 40 20 chr12 36286288 36286389 -107500066 - MER46C DNA MER2_type -229 109 7 315 341 69 6 chr12 36286404 36286577 -107499878 + L1M4 LINE L1 2441 2624 -3522 2639 98 42 2 chr12 36286644 36287050 -107499405 + L1MA2 LINE L1 5883 6304 0 22 35 0 0 chr12 36287224 36287253 -107499202 + AT_rich Low_complexity Low_complexity 1 29 0 1398 272 13 27 chr12 36287340 36287895 -107498560 + L1MC/D LINE L1 2325 2871 -3275 304 246 0 0 chr12 36287927 36287988 -107498467 + L1MC/D LINE L1 5671 5731 -628 1507 58 11 0 chr12 36288199 36288389 -107498066 - L1PA7 LINE L1 -15 6139 5948 719 278 70 26 chr12 36290192 36290462 -107495993 + LTR16A LTR ERVL 76 357 -93 627 110 0 10 chr12 36291252 36291352 -107495103 - L1PA10 LINE L1 -1 6167 6069 21 57 0 0 chr12 36291899 36291934 -107494521 + AT_rich Low_complexity Low_complexity 1 35 0 322 290 85 17 chr12 36291950 36292126 -107494329 - LTR67 LTR ERVL -16 541 354 202 383 35 30 chr12 36292438 36292668 -107493787 - L2 LINE L2 -1964 1350 1120 218 343 86 0 chr12 36292867 36292972 -107493483 - L2 LINE L2 -2486 828 715 2320 109 0 0 chr12 36293030 36293332 -107493123 + AluSg SINE Alu 1 302 -8 508 222 22 0 chr12 36294545 36294680 -107491775 + L1MA8 LINE L1 6144 6281 -10 2419 178 16 0 chr12 36295024 36295513 -107490942 + L1P LINE L1 2599 3095 -3051 6446 12 0 0 chr12 36296451 36297176 -107489279 + L1PA2 LINE L1 5431 6155 0 278 297 47 27 chr12 36298040 36298188 -107488267 + L1M3c LINE L1 1 151 -5990 306 390 21 5 chr12 36298191 36298381 -107488074 + L1M3c LINE L1 223 415 -5726 658 105 137 8 chr12 36298756 36298880 -107487575 + L1MA9 LINE L1 5789 5928 -384 2424 140 0 11 chr12 36298880 36299259 -107487196 + THE1C LTR MaLR 1 375 0 2446 99 8 3 chr12 36299259 36299632 -107486823 + THE1C-int LTR MaLR 1 375 -1205 17059 110 16 8 chr12 36299641 36303080 -107483375 - L1PA7 LINE L1 -1 6153 2687 209 190 121 17 chr12 36303976 36304034 -107482421 + L2 LINE L2 2304 2367 -947 1380 262 77 14 chr12 36304209 36304717 -107481738 - L1MC4 LINE L1 -258 7784 7245 2182 231 34 12 chr12 36304733 36305314 -107481141 - L1MC4 LINE L1 -958 7084 6491 224 258 0 30 chr12 36306172 36306238 -107480217 + GA-rich Low_complexity Low_complexity 2 65 0 350 234 0 26 chr12 36307721 36307798 -107478657 + MER5A DNA MER1_type 16 90 -99 575 329 96 23 chr12 36308425 36308811 -107477644 + LTR16B LTR ERVL 37 450 -14 2301 147 12 2 chr12 36309964 36310513 -107475942 + L1PA8 LINE L1 3989 6172 0 * 5678 166 20 6 chr12 36310506 36312479 -107473976 + L1PB2 LINE L1 4151 6150 -1 270 0 0 0 chr12 36313212 36313242 -107473213 + (TG)n Simple_repeat Simple_repeat 2 31 0 982 224 41 4 chr12 36314765 36315063 -107471392 + L1ME1 LINE L1 5120 5424 -742 * 1229 244 85 46 chr12 36315059 36315576 -107470879 + L1ME1 LINE L1 5625 6161 -5 2532 222 6 5 chr12 36315651 36316317 -107470138 + L1PB1 LINE L1 4370 5036 -1110 5326 125 18 38 chr12 36316475 36317628 -107468827 + L1PB1 LINE L1 5021 6151 0 26 30 0 0 chr12 36317680 36317713 -107468742 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chr12 36317978 36318009 -107468446 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 291 29 34 chr12 36319673 36319848 -107466607 - L1M4 LINE L1 -816 5566 5393 41490 48 2 1 chr12 36319877 36325354 -107461101 + L1P1 LINE L1 2 5483 -672 2307 177 11 11 chr12 36325518 36325976 -107460479 + L1MC1 LINE L1 5858 6315 -18 4063 21 0 0 chr12 36326200 36326665 -107459790 + L1PA3 LINE L1 5687 6151 -4 2691 246 77 19 chr12 36326689 36327948 -107458507 - L1M4 LINE L1 -2753 3629 2302 947 256 14 14 chr12 36328725 36329002 -107457453 + L1ME3A LINE L1 5887 6163 -7 2612 216 31 3 chr12 36330374 36331012 -107455443 - L1M4 LINE L1 -3198 2948 2293 3443 222 25 5 chr12 36331016 36331553 -107454902 + L1M4 LINE L1 2951 3515 -2631 189 0 0 0 chr12 36331553 36331574 -107454881 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3443 222 25 5 chr12 36331574 36331976 -107454479 + L1M4 LINE L1 3515 3908 -2238 624 114 54 0 chr12 36332140 36332307 -107454148 + (TA)n Simple_repeat Simple_repeat 2 177 0 615 232 21 7 chr12 36332307 36332449 -107454006 - MER58A DNA MER1_type 0 162 19 1397 273 52 32 chr12 36332473 36332913 -107453542 + L1M4 LINE L1 4254 4721 -1425 2457 69 3 0 chr12 36332913 36333218 -107453237 + AluY SINE Alu 1 306 -5 1397 273 52 32 chr12 36333218 36333619 -107452836 + L1M4 LINE L1 4721 5112 -1034 2196 89 17 3 chr12 36333628 36333920 -107452535 + AluSp SINE Alu 1 296 -17 183 80 0 0 chr12 36333966 36333991 -107452464 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 831 273 159 62 chr12 36336542 36336678 -107449777 - L2 LINE L2 -1345 1969 1848 378 0 0 0 chr12 36336678 36336720 -107449735 + (TA)n Simple_repeat Simple_repeat 2 43 0 831 273 159 62 chr12 36336720 36337150 -107449305 - L2 LINE L2 -1466 1848 1348 608 244 58 24 chr12 36338054 36338259 -107448196 + MLT1J LTR MaLR 293 504 -7 2089 68 4 0 chr12 36339282 36339548 -107446907 - AluY SINE Alu -44 267 1 1875 150 7 3 chr12 36339550 36339843 -107446612 - AluSx SINE Alu -17 295 2 1407 274 100 27 chr12 36340353 36340903 -107445552 - L2 LINE L2 -2102 1212 623 1932 75 0 0 chr12 36341413 36341665 -107444790 - L1PA7 LINE L1 -3 6151 5900 529 76 0 0 chr12 36341923 36342002 -107444453 - L1MC/D LINE L1 -902 5431 5353 * 12277 205 29 21 chr12 36341996 36342449 -107444006 - L1PA7 LINE L1 -3 6151 5703 282 56 0 0 chr12 36342449 36342485 -107443970 + (CA)n Simple_repeat Simple_repeat 2 37 0 12277 205 29 21 chr12 36342485 36342670 -107443785 - L1PA7 LINE L1 -451 5703 5521 180 0 0 0 chr12 36342670 36342690 -107443765 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 12277 205 29 21 chr12 36342690 36345399 -107441056 - L1PA7 LINE L1 -633 5521 2772 1948 83 93 17 chr12 36345399 36345688 -107440767 - AluY SINE Alu 0 311 1 12277 205 29 21 chr12 36345688 36346201 -107440254 - L1PA7 LINE L1 -3382 2772 2264 6113 237 35 13 chr12 36346212 36348191 -107438264 - L1MC/D LINE L1 -743 5403 3580 22 0 0 0 chr12 36348953 36348975 -107437480 + AT_rich Low_complexity Low_complexity 1 22 0 3134 241 105 55 chr12 36349953 36351365 -107435090 - L1MC4 LINE L1 -13 8029 6547 2027 227 124 14 chr12 36351554 36352286 -107434169 - L1ME3 LINE L1 -189 5973 5150 649 279 18 9 chr12 36352667 36352889 -107433566 - L1M1 LINE L1 -4441 3124 2901 1412 119 45 34 chr12 36352918 36353187 -107433268 - L1MA2 LINE L1 -8 6296 6025 9741 204 30 7 chr12 36353187 36355420 -107431035 - L1 LINE L1 -1229 6336 4054 1221 184 68 8 chr12 36355420 36355670 -107430785 + MSTA LTR MaLR 1 265 -163 9362 123 13 3 chr12 36355673 36357025 -107429430 - THE1C-int LTR MaLR -215 1365 1 1887 160 35 19 chr12 36357025 36357394 -107429061 - THE1C LTR MaLR 0 375 1 703 214 7 7 chr12 36357395 36357549 -107428906 + MSTA-int LTR MaLR 1427 1580 0 1937 166 97 5 chr12 36357549 36357941 -107428514 + MSTA LTR MaLR 1 428 0 12128 168 82 25 chr12 36357941 36360721 -107425734 - L1 LINE L1 -3507 4058 1103 480 148 41 41 chr12 36360715 36360837 -107425618 - L1 LINE L1 -7430 135 14 * 1821 259 31 19 chr12 36360839 36361415 -107425040 - L1MEc LINE L1 -4732 1485 903 1193 223 31 57 chr12 36361604 36361922 -107424533 - L1M4c LINE L1 -6153 1412 1103 480 148 41 41 chr12 36361916 36362038 -107424417 - L1M4c LINE L1 -7430 135 14 * 3718 233 27 35 chr12 36362040 36363045 -107423410 - L1M4c LINE L1 -4524 2129 1417 1985 134 3 3 chr12 36363045 36363364 -107423091 + AluSg SINE Alu 2 320 0 3718 233 27 35 chr12 36363364 36363587 -107422868 - L1M4c LINE L1 -5236 1417 1194 446 289 98 31 chr12 36363858 36364052 -107422403 + MIR SINE MIR 1 207 -55 256 313 48 0 chr12 36364813 36364896 -107421559 - MIR SINE MIR -175 87 1 357 273 87 43 chr12 36365959 36366120 -107420335 - MIR SINE MIR -46 216 49 27 49 0 0 chr12 36366188 36366229 -107420226 + AT_rich Low_complexity Low_complexity 1 41 0 363 293 24 32 chr12 36366444 36366567 -107419888 + L2 LINE L2 3192 3313 0 24 32 0 0 chr12 36366618 36366649 -107419806 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr12 36366820 36366858 -107419597 + AT_rich Low_complexity Low_complexity 1 38 0 457 238 0 0 chr12 36367510 36367615 -107418840 - L1MEc LINE L1 -5561 835 731 302 189 15 61 chr12 36367616 36367748 -107418707 + (CATATA)n Simple_repeat Simple_repeat 1 126 0 307 211 14 0 chr12 36368749 36368820 -107417635 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 36368846 36369036 -107417419 + MIR SINE MIR 51 256 -6 2113 78 7 3 chr12 36369064 36369348 -107417107 - AluY SINE Alu -26 285 1 21 36 0 0 chr12 36370487 36370515 -107415940 + AT_rich Low_complexity Low_complexity 1 28 0 208 0 62 0 chr12 36370711 36370743 -107415712 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1863 18 5 0 chr12 36370743 36370964 -107415491 - L1PA4 LINE L1 -18 6137 5916 22 0 0 0 chr12 36371493 36371515 -107414940 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 36371772 36371793 -107414662 + AT_rich Low_complexity Low_complexity 1 21 0 7221 43 1 3 chr12 36372121 36373356 -107413099 + L1PA5 LINE L1 4915 6147 -7 2206 277 91 17 chr12 36373367 36374292 -107412163 + L2 LINE L2 2205 3215 -98 206 339 121 0 chr12 36374788 36374912 -107411543 + MIR SINE MIR 49 187 -75 714 261 28 0 chr12 36375590 36375770 -107410685 - MIR SINE MIR -48 214 30 276 323 0 31 chr12 36376611 36376707 -107409748 - L2 LINE L2 -1 3271 3179 194 61 0 30 chr12 36376882 36376915 -107409540 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1439 6 0 0 chr12 36376931 36377092 -107409363 - L1PA4 LINE L1 -300 5855 5695 1031 16 0 0 chr12 36377086 36377212 -107409243 + L1P1 LINE L1 5358 5483 -672 * 1273 81 5 0 chr12 36379629 36379814 -107406641 - L1P LINE L1 -3665 2481 2296 949 228 13 43 chr12 36380246 36380478 -107405977 + Charlie1a DNA MER1_type 2 226 -1229 239 360 21 11 chr12 36380608 36380794 -107405661 + L1MC/D LINE L1 5722 5909 -1899 2059 154 9 0 chr12 36380964 36381301 -107405154 - L1PA15 LINE L1 -7 6158 5819 39936 69 34 2 chr12 36382149 36388124 -107398331 - L1PA13 LINE L1 -7 6156 5 371 198 58 0 chr12 36388126 36388247 -107398208 + L1 LINE L1 3396 3523 -2623 746 222 47 18 chr12 36388247 36388418 -107398037 + THE1B LTR MaLR 1 176 -188 21 36 0 0 chr12 36389066 36389094 -107397361 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 36389289 36389310 -107397145 + AT_rich Low_complexity Low_complexity 1 21 0 6641 74 3 3 chr12 36389310 36390433 -107396022 - L1PA5 LINE L1 -4 6150 5025 289 347 10 0 chr12 36390443 36390541 -107395914 - MIR SINE MIR -111 151 53 435 234 9 9 chr12 36390827 36390934 -107395521 + MLT1J2 LTR MaLR 5 111 -339 2471 242 13 32 chr12 36391790 36392343 -107394112 + MLT2B3 LTR ERVL 5 546 -8 1972 91 4 0 chr12 36393289 36393542 -107392913 + AluSp SINE Alu 51 304 -9 752 278 4 18 chr12 36393783 36394010 -107392445 + MER58A DNA MER1_type 1 224 0 447 330 17 23 chr12 36394051 36394224 -107392231 - MIR SINE MIR -14 248 77 210 37 0 0 chr12 36394383 36394410 -107392045 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 228 160 80 0 chr12 36395284 36395359 -107391096 + (TA)n Simple_repeat Simple_repeat 1 81 0 201 140 53 0 chr12 36395533 36395590 -107390865 + (TA)n Simple_repeat Simple_repeat 2 61 0 210 184 0 20 chr12 36395596 36395645 -107390810 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 468 270 53 59 chr12 36396000 36396356 -107390099 + L1ME LINE L1 542 895 -5175 8101 167 8 4 chr12 36396362 36397778 -107388677 - L1PA10 LINE L1 -3127 3019 1599 14082 150 16 7 chr12 36397778 36400877 -107385578 + L1PA10 LINE L1 3037 6156 -12 1383 340 26 54 chr12 36400892 36402241 -107384214 + L1ME LINE L1 907 2176 -3904 265 266 0 0 chr12 36402244 36402308 -107384147 + L1ME LINE L1 3564 3627 -2453 12556 108 7 4 chr12 36402458 36404293 -107382162 - L1P LINE L1 -1271 4875 3037 * 15266 101 4 57 chr12 36404286 36405439 -107381016 + L1P LINE L1 1592 2554 -3592 3618 67 7 11 chr12 36405439 36405887 -107380568 - L1PA7 LINE L1 -13 6141 5696 15266 101 4 57 chr12 36405887 36407123 -107379332 + L1P LINE L1 2554 3854 -2292 806 128 8 8 chr12 36407230 36407347 -107379108 - AluJb SINE Alu -185 127 11 960 202 0 0 chr12 36407354 36407572 -107378883 - L1M4 LINE L1 -3006 3140 2923 580 239 0 18 chr12 36407576 36407689 -107378766 + FLAM_C SINE Alu 7 117 -26 2240 112 0 13 chr12 36407736 36408050 -107378405 - AluSg SINE Alu 0 310 1 815 289 40 47 chr12 36408059 36408465 -107377990 - L1M4 LINE L1 -1034 5112 4708 2478 60 7 3 chr12 36408465 36408766 -107377689 - AluY SINE Alu -9 302 1 815 289 40 47 chr12 36408766 36408853 -107377602 - L1M4 LINE L1 -1438 4708 4622 14201 69 6 1 chr12 36408992 36410869 -107375586 + L1P2 LINE L1 3549 5433 -721 26 0 0 0 chr12 36411181 36411207 -107375248 + AT_rich Low_complexity Low_complexity 1 26 0 2073 83 4 4 chr12 36412720 36413008 -107373447 + AluY SINE Alu 20 307 0 524 182 0 15 chr12 36413230 36413362 -107373093 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 36413644 36413685 -107372770 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 3588 180 17 4 chr12 36413782 36414475 -107371980 - L1P LINE L1 -2096 4050 3349 299 211 14 0 chr12 36414606 36414677 -107371778 - MIR SINE MIR -14 248 177 364 342 89 5 chr12 36414703 36414893 -107371562 + MIR SINE MIR 51 256 -6 2305 74 0 0 chr12 36414921 36415206 -107371249 - AluY SINE Alu -26 285 1 227 277 128 11 chr12 36415213 36415307 -107371148 - MIR SINE MIR -106 156 52 270 0 0 0 chr12 36416379 36416409 -107370046 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr12 36416841 36416863 -107369592 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 36417187 36417230 -107369225 + AT_rich Low_complexity Low_complexity 1 43 0 53 17 0 0 chr12 36417715 36417775 -107368680 + AT_rich Low_complexity Low_complexity 1 60 0 274 339 54 45 chr12 36417816 36418037 -107368418 + MLT1I LTR MaLR 132 354 -55 939 182 13 7 chr12 36419227 36419381 -107367074 - FRAM SINE Alu -11 155 1 37442 45 29 1 chr12 36420218 36424832 -107361623 - L1P LINE L1 -1403 4743 2 9118 44 0 0 chr12 36424832 36425946 -107360509 + L1P LINE L1 1832 2945 -3201 43317 52 10 0 chr12 36425946 36431505 -107354950 - L1P2 LINE L1 -540 5615 1 1396 183 10 55 chr12 36431588 36431877 -107354578 + AluJo SINE Alu 1 276 -36 22 0 0 0 chr12 36432254 36432276 -107354179 + AT_rich Low_complexity Low_complexity 1 22 0 800 167 27 27 chr12 36432393 36432543 -107353912 - L1PB4 LINE L1 -2 6154 6005 23 0 0 0 chr12 36433883 36433906 -107352549 + AT_rich Low_complexity Low_complexity 1 23 0 190 305 0 84 chr12 36433995 36434090 -107352365 - MIR SINE MIR -111 151 65 246 32 0 0 chr12 36434191 36434222 -107352233 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 321 36 0 chr12 36434377 36434433 -107352022 + MIR SINE MIR 45 102 -160 2203 113 0 3 chr12 36434587 36434888 -107351567 - AluSg SINE Alu -7 303 4 215 30 0 30 chr12 36435344 36435377 -107351078 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5404 54 0 2 chr12 36435529 36436159 -107350296 - L1PA5 LINE L1 -1 6153 5525 4320 27 0 2 chr12 36436439 36436925 -107349530 - MER11D LTR ERVK -412 485 1 441 306 105 36 chr12 36439045 36439419 -107347036 - L1M2 LINE L1 -5702 1147 674 243 0 0 0 chr12 36439602 36439629 -107346826 + (T)n Simple_repeat Simple_repeat 1 27 0 2038 57 0 0 chr12 36441873 36442120 -107344335 + MER11D LTR ERVK 651 897 0 1586 69 0 25 chr12 36442482 36442721 -107343734 + AluY SINE Alu 83 316 0 1264 243 94 55 chr12 36443718 36443945 -107342510 - L1M4 LINE L1 -2130 4016 3799 952 213 0 0 chr12 36443945 36444100 -107342355 - FRAM SINE Alu -11 155 1 1264 243 94 55 chr12 36444100 36444470 -107341985 - L1M4 LINE L1 -2347 3799 3396 290 167 61 18 chr12 36446779 36446893 -107339562 + (TA)n Simple_repeat Simple_repeat 2 120 0 237 87 48 63 chr12 36446911 36447037 -107339418 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 246 32 0 0 chr12 36448188 36448219 -107338236 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2337 56 43 31 chr12 36448220 36448542 -107337913 - LTR17 LTR ERV1 -454 326 1 2414 58 0 0 chr12 36448542 36448834 -107337621 - HERV17 LTR ERV1 0 8626 8335 318 26 0 0 chr12 36448824 36448863 -107337592 - HERV17 LTR ERV1 -1078 7548 7510 * 18369 45 12 0 chr12 36448856 36451056 -107335399 - HERV17 LTR ERV1 -2607 6019 3794 1115 257 69 49 chr12 36451356 36451807 -107334648 + MLT1C LTR MaLR 6 465 -2 24 0 0 0 chr12 36454514 36454538 -107331917 + AT_rich Low_complexity Low_complexity 1 24 0 1291 268 102 15 chr12 36454757 36455295 -107331160 - L1ME3A LINE L1 -15 6155 5571 19621 45 4 0 chr12 36455305 36458539 -107327916 - L1PA4 LINE L1 -3 6152 2908 566 168 20 0 chr12 36458658 36458759 -107327696 + AluSq SINE Alu 102 204 -109 225 204 0 0 chr12 36458773 36458822 -107327633 - L1MC4 LINE L1 -1342 6700 6652 1717 100 62 8 chr12 36458833 36459092 -107327363 - L1P5 LINE L1 -360 5791 5519 1935 150 3 0 chr12 36460146 36460439 -107326016 - AluSq SINE Alu -19 294 1 2274 190 28 31 chr12 36460931 36461389 -107325066 + MLT2C2 LTR ERVL 8 464 0 939 52 0 0 chr12 36461504 36461620 -107324835 - L1PA2 LINE L1 -2 6153 6038 1284 77 33 83 chr12 36462723 36462964 -107323491 + L1MA1 LINE L1 5776 5899 -265 1475 216 60 3 chr12 36462971 36463304 -107323151 - L1PA16 LINE L1 -20 6146 5795 235 162 63 27 chr12 36463305 36463416 -107323039 + (TA)n Simple_repeat Simple_repeat 1 115 0 1264 205 26 6 chr12 36463426 36463702 -107322753 - L1MC4 LINE L1 -342 5814 5570 209 306 42 0 chr12 36463740 36463812 -107322643 - MIR SINE MIR -133 129 55 6645 41 0 1 chr12 36464959 36465769 -107320686 + L1PA4 LINE L1 5347 6155 0 254 277 62 45 chr12 36465772 36465884 -107320571 + MLT1L LTR MaLR 136 249 -366 540 262 75 122 chr12 36466025 36466518 -107319937 - L2 LINE L2 0 3313 2844 427 272 9 9 chr12 36466653 36466767 -107319688 + MLT1L LTR MaLR 447 560 -55 12695 60 4 1 chr12 36466916 36468575 -107317880 + L1P LINE L1 1262 2924 -3222 571 266 0 0 chr12 36469317 36469445 -107317010 + FLAM_A SINE Alu 10 137 -5 702 174 103 0 chr12 36469612 36469767 -107316688 - MER6 DNA MER2_type 0 865 695 12615 41 3 0 chr12 36469868 36472196 -107314259 + L1PA3 LINE L1 3822 6155 0 14450 70 1 3 chr12 36472197 36474043 -107312412 - L1P LINE L1 -4304 1842 2 557 263 22 22 chr12 36474048 36474276 -107312179 - L1MC4 LINE L1 -591 5579 5352 552 279 0 0 chr12 36474280 36474445 -107312010 - L1MC4 LINE L1 -859 5287 5123 306 346 73 11 chr12 36474599 36474778 -107311677 - L2 LINE L2 -832 2482 2293 201 319 71 105 chr12 36474906 36475172 -107311283 + L2 LINE L2 2270 2526 -788 215 245 245 20 chr12 36475370 36475472 -107310983 - MIR SINE MIR -130 132 8 391 315 54 0 chr12 36476526 36476656 -107309799 - MIR3 SINE MIR -11 197 61 345 269 23 47 chr12 36476908 36477113 -107309342 - HAL1 LINE L1 -275 2232 1962 10275 207 56 23 chr12 36477156 36477499 -107308956 - L1MC3 LINE L1 0 7785 7455 1658 230 22 0 chr12 36477499 36477856 -107308599 + MLT1A1 LTR MaLR 1 365 0 10275 207 56 23 chr12 36477856 36480198 -107306257 - L1MC3 LINE L1 -330 7455 5006 1307 161 35 121 chr12 36480198 36480595 -107305860 - MLT1A1 LTR MaLR -2 363 1 10275 207 56 23 chr12 36480595 36480625 -107305830 - L1MC3 LINE L1 -2779 5006 4978 22 70 0 0 chr12 36482267 36482310 -107304145 + AT_rich Low_complexity Low_complexity 1 43 0 453 299 63 35 chr12 36482451 36482625 -107303830 + MIR3 SINE MIR 19 197 -11 234 312 22 22 chr12 36483451 36483589 -107302866 - L1MC4a LINE L1 -1787 6021 5884 283 304 11 0 chr12 36484050 36484142 -107302313 - L2 LINE L2 0 3272 3180 674 292 75 4 chr12 36484180 36484420 -107302035 + L2 LINE L2 2572 2828 -486 294 313 67 56 chr12 36485438 36485633 -107300822 + MIR SINE MIR 8 204 -58 2149 123 6 0 chr12 36485725 36486049 -107300406 - L1PB1 LINE L1 -8 6859 6534 9214 185 13 39 chr12 36486051 36488664 -107297791 - L1PB1 LINE L1 -492 6375 3842 2920 146 153 5 chr12 36488660 36490489 -107295966 - L1PB1 LINE L1 -4031 2832 605 * 3338 100 35 81 chr12 36490521 36491141 -107295314 - LTR14B LTR ERVK 0 608 17 1606 271 45 11 chr12 36491141 36491669 -107294786 - L1PB1 LINE L1 -6312 551 6 467 271 107 37 chr12 36491694 36491829 -107294626 + L2 LINE L2 3005 3129 -184 2009 143 39 3 chr12 36491829 36492165 -107294290 + MER7A DNA MER2_type 1 346 0 467 271 107 37 chr12 36492165 36492273 -107294182 + L2 LINE L2 3129 3265 -48 726 234 26 75 chr12 36493610 36493837 -107292618 + MIR SINE MIR 31 246 -16 22 35 0 0 chr12 36495001 36495030 -107291425 + AT_rich Low_complexity Low_complexity 1 29 0 355 235 59 24 chr12 36495407 36495492 -107290963 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 36496367 36496388 -107290067 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chr12 36496603 36496664 -107289791 + AT_rich Low_complexity Low_complexity 1 61 0 200 248 16 25 chr12 36496677 36496798 -107289657 + (TAA)n Simple_repeat Simple_repeat 3 122 0 531 68 0 0 chr12 36496863 36496936 -107289519 + Alu SINE Alu 224 296 -15 23 0 0 0 chr12 36497148 36497171 -107289284 + AT_rich Low_complexity Low_complexity 1 23 0 298 345 143 0 chr12 36497209 36497328 -107289127 - L2 LINE L2 0 3272 3137 327 250 12 25 chr12 36498601 36498681 -107287774 - MIR SINE MIR -107 101 23 2360 58 3 3 chr12 36499790 36500085 -107286370 - AluY SINE Alu -16 295 1 2386 65 14 0 chr12 36500093 36500385 -107286070 - AluSp SINE Alu -17 296 1 351 44 0 0 chr12 36501374 36501419 -107285036 + (CA)n Simple_repeat Simple_repeat 2 46 0 305 248 60 38 chr12 36501793 36501926 -107284529 + L2 LINE L2 416 551 -2763 493 297 40 7 chr12 36501947 36502152 -107284303 + MIR SINE MIR 2 254 -8 2597 99 11 8 chr12 36502554 36502917 -107283538 + THE1B LTR MaLR 1 364 0 286 275 84 23 chr12 36503140 36503271 -107283184 + L1ME LINE L1 89 227 -5843 356 316 83 18 chr12 36503285 36503453 -107283002 + L1ME LINE L1 274 452 -5618 619 258 163 5 chr12 36504557 36504747 -107281708 + MIR SINE MIR 11 230 -32 390 360 167 22 chr12 36505416 36505924 -107280531 - L3 LINE CR1 -3 1574 993 24 0 0 0 chr12 36505924 36505948 -107280507 + AT_rich Low_complexity Low_complexity 1 24 0 563 315 91 26 chr12 36505966 36506198 -107280257 + MIR SINE MIR 8 254 -8 593 162 29 59 chr12 36506334 36506470 -107279985 + FLAM_C SINE Alu 6 137 -6 209 232 14 0 chr12 36506473 36506542 -107279913 + (TA)n Simple_repeat Simple_repeat 2 71 0 1428 109 19 9 chr12 36507191 36507402 -107279053 + MER30 DNA MER1_type 1 213 -17 2428 92 0 3 chr12 36509132 36509446 -107277009 + AluSq SINE Alu 1 313 0 240 254 111 0 chr12 36510145 36510208 -107276247 + MIR3 SINE MIR 124 193 -15 3369 166 23 12 chr12 36510338 36510988 -107275467 + L1MA7 LINE L1 5619 6275 -16 992 208 75 106 chr12 36511066 36511540 -107274915 + MLT1C LTR MaLR 1 467 0 588 63 13 0 chr12 36511836 36511915 -107274540 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr12 36512131 36512153 -107274302 + AT_rich Low_complexity Low_complexity 1 22 0 254 324 137 7 chr12 36513981 36514120 -107272335 + L2 LINE L2 2699 2855 -459 863 276 22 13 chr12 36514431 36514663 -107271792 - MIR SINE MIR -10 252 19 295 330 170 9 chr12 36514685 36514797 -107271658 + L2 LINE L2 3134 3263 -9 370 306 134 34 chr12 36515626 36515835 -107270620 - MIR SINE MIR -32 230 1 270 0 0 0 chr12 36516915 36516945 -107269510 + (A)n Simple_repeat Simple_repeat 1 30 0 215 396 60 7 chr12 36518347 36518496 -107267959 - MIR3 SINE MIR -3 205 49 206 189 170 19 chr12 36518653 36518706 -107267749 + MER5B DNA MER1_type 45 105 -73 191 302 23 35 chr12 36518676 36518762 -107267693 + MER5A DNA MER1_type 25 109 -80 * 322 255 41 10 chr12 36519237 36519335 -107267120 + MLT1I LTR MaLR 306 406 -3 24 67 0 0 chr12 36519661 36519706 -107266749 + AT_rich Low_complexity Low_complexity 1 45 0 2203 168 57 14 chr12 36519790 36520213 -107266242 - MER65A LTR ERV1 -4 441 1 270 309 31 0 chr12 36520213 36520310 -107266145 - MER81 DNA DNA -6 108 9 1863 129 42 58 chr12 36520310 36520691 -107265764 + THE1C LTR MaLR 1 375 0 514 231 97 30 chr12 36520755 36520889 -107265566 + MER5A DNA MER1_type 1 143 -46 859 289 28 73 chr12 36522511 36523019 -107263436 + L1MCc LINE L1 651 1135 -5288 324 0 0 0 chr12 36523019 36523055 -107263400 + (TG)n Simple_repeat Simple_repeat 2 37 0 973 286 43 6 chr12 36523067 36523417 -107263038 - L1ME LINE L1 -498 5672 5310 495 114 0 0 chr12 36523428 36523507 -107262948 + L1PA14 LINE L1 6078 6156 -5 947 231 96 4 chr12 36523713 36523994 -107262461 + MER5C DNA MER1_type 12 318 -6 27 0 0 0 chr12 36524105 36524132 -107262323 + AT_rich Low_complexity Low_complexity 1 27 0 186 191 0 0 chr12 36524607 36524649 -107261806 + T-rich Low_complexity Low_complexity 1 42 0 338 129 18 13 chr12 36524825 36524899 -107261556 - L1ME1 LINE L1 0 6184 6102 53 17 0 0 chr12 36525283 36525343 -107261112 + AT_rich Low_complexity Low_complexity 1 60 0 277 339 54 45 chr12 36525384 36525605 -107260850 + MLT1I LTR MaLR 132 354 -55 23 0 0 0 chr12 36527092 36527115 -107259340 + AT_rich Low_complexity Low_complexity 1 23 0 212 287 253 0 chr12 36528728 36528815 -107257640 - L2 LINE L2 -1 3312 3204 269 265 84 0 chr12 36528897 36528980 -107257475 + MER3 DNA MER1_type 12 101 -108 213 39 0 0 chr12 36528988 36529014 -107257441 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1432 119 5 0 chr12 36529014 36529216 -107257239 - AluSg/x SINE Alu -25 284 82 36 23 0 0 chr12 36529216 36529259 -107257196 + AT_rich Low_complexity Low_complexity 1 43 0 1455 179 44 11 chr12 36529508 36529782 -107256673 + AluSx SINE Alu 1 283 -29 369 0 0 0 chr12 36529789 36529830 -107256625 + (CA)n Simple_repeat Simple_repeat 2 42 0 33 0 0 0 chr12 36529993 36530026 -107256429 + AT_rich Low_complexity Low_complexity 1 33 0 273 376 91 11 chr12 36530114 36530300 -107256155 - MIR SINE MIR -32 230 30 1519 218 112 3 chr12 36530311 36530670 -107255785 + MLT1D LTR MaLR 1 460 -123 279 294 35 56 chr12 36531587 36531730 -107254725 - MIR SINE MIR -74 188 49 357 264 163 0 chr12 36532100 36532229 -107254226 - MIR SINE MIR -45 217 68 6778 239 65 49 chr12 36532424 36535408 -107251047 - L1PA15-16 LINE L1 -2046 5538 2529 2082 158 5 30 chr12 36535416 36535789 -107250666 + THE1B LTR MaLR 1 364 0 11088 101 10 38 chr12 36535789 36537412 -107249043 + THE1B-int LTR MaLR 1 1578 -2 2122 139 5 52 chr12 36537414 36537796 -107248659 + THE1B LTR MaLR 1 364 0 808 324 6 9 chr12 36537800 36538118 -107248337 - L1PA15-16 LINE L1 -5074 2507 2191 325 257 21 71 chr12 36538362 36538502 -107247953 - L1PA15-16 LINE L1 -5395 2186 2054 1021 363 20 25 chr12 36538614 36539204 -107247251 - L1PA15-16 LINE L1 -6200 1374 788 430 239 0 0 chr12 36539672 36539764 -107246691 + L2 LINE L2 3222 3313 0 354 395 36 0 chr12 36539863 36540030 -107246425 - MIR3 SINE MIR -28 180 8 1473 218 7 18 chr12 36541579 36541896 -107244559 + AluJo SINE Alu 1 314 0 350 351 26 13 chr12 36541907 36542061 -107244394 + MIR3 SINE MIR 32 187 -21 214 375 83 73 chr12 36542147 36542544 -107243911 - L2 LINE L2 -46 3226 2826 249 14 68 54 chr12 36542940 36543014 -107243441 + (TA)n Simple_repeat Simple_repeat 2 76 0 269 161 34 101 chr12 36543014 36543163 -107243292 + (CTATA)n Simple_repeat Simple_repeat 3 141 0 226 97 0 97 chr12 36543165 36543341 -107243114 + (TA)n Simple_repeat Simple_repeat 1 159 0 4271 115 9 5 chr12 36544341 36544994 -107241461 - L1P LINE L1 -5486 660 5 2580 220 34 55 chr12 36544996 36545118 -107241337 + L1MA9 LINE L1 3396 3519 -2627 2033 145 25 30 chr12 36545118 36545484 -107240971 + THE1B LTR MaLR 1 364 0 11157 113 8 0 chr12 36545484 36547052 -107239403 + THE1B-int LTR MaLR 1 1580 0 2060 144 22 35 chr12 36547052 36547421 -107239034 + THE1B LTR MaLR 1 364 0 2580 220 34 55 chr12 36547421 36547744 -107238711 + L1MA9 LINE L1 3517 3845 -2301 4820 101 22 5 chr12 36547744 36548486 -107237969 + L1MA1 LINE L1 5549 6302 0 2580 220 34 55 chr12 36548486 36548988 -107237467 + L1MA9 LINE L1 3845 4325 -1821 5356 109 22 0 chr12 36549040 36549401 -107237054 - L1PA13 LINE L1 -8 6155 5804 2377 127 5 24 chr12 36549401 36549771 -107236684 + THE1B LTR MaLR 2 364 0 5356 109 22 0 chr12 36549771 36550687 -107235768 - L1PA13 LINE L1 -359 5804 4855 2415 201 19 11 chr12 36550688 36551221 -107235234 + L1MA9 LINE L1 5407 5943 -369 318 26 0 0 chr12 36552394 36552433 -107234022 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 0 0 0 chr12 36552432 36552472 -107233983 + (TG)n Simple_repeat Simple_repeat 2 41 0 181 319 14 29 chr12 36553051 36553120 -107233335 - MER5B DNA MER1_type -74 104 37 257 173 40 40 chr12 36553159 36553234 -107233221 - MER116 DNA Mariner 0 80 6 219 338 14 14 chr12 36553275 36553349 -107233106 - MER5A DNA MER1_type -63 126 53 4817 69 12 0 chr12 36554140 36554779 -107231676 - L1PA6 LINE L1 -3 6151 5505 8197 193 23 13 chr12 36554808 36556533 -107229922 - L1PA12 LINE L1 -1193 6391 4649 * 35383 109 26 14 chr12 36556529 36562628 -107223827 - L1PA8 LINE L1 0 6172 11 7281 212 18 14 chr12 36562644 36564944 -107221511 - L1PA12 LINE L1 -2922 4662 2360 675 159 0 0 chr12 36564944 36565051 -107221404 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 36565484 36565662 -107220793 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 36566111 36566276 -107220179 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 36566312 36566663 -107219792 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 36566915 36566984 -107219471 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 36566996 36567139 -107219316 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 36567161 36567222 -107219233 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 36567593 36567865 -107218590 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 36567939 36568090 -107218365 - MER5A DNA MER1_type -14 175 25 15639 99 12 1 chr12 36569846 36572029 -107214426 + L1P LINE L1 1 2209 -3937 * 41395 59 5 4 chr12 36572026 36578140 -107208315 + L1PA5 LINE L1 39 6154 0 349 294 142 41 chr12 36578499 36578717 -107207738 + MIR SINE MIR 23 262 0 1279 207 42 72 chr12 36580352 36580738 -107205717 + MLT1A2 LTR MaLR 1 374 0 1452 172 71 98 chr12 36580964 36581371 -107205084 + MSTD LTR MaLR 1 396 0 1426 241 71 49 chr12 36584424 36584918 -107201537 + MLT1D LTR MaLR 1 505 0 828 304 149 8 chr12 36586351 36586720 -107199735 + MLT1J LTR MaLR 77 497 -14 493 214 55 167 chr12 36588256 36588630 -107197825 + LTR28 LTR ERV1 1 1147 -101 23 0 0 0 chr12 36588805 36588828 -107197627 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 36588988 36589009 -107197446 + AT_rich Low_complexity Low_complexity 1 21 0 263 301 154 0 chr12 36590822 36590945 -107195510 + MIR SINE MIR 121 262 0 212 373 89 27 chr12 36591299 36591524 -107194931 + L3 LINE CR1 211 449 -1128 2357 91 54 23 chr12 36591527 36591880 -107194575 + THE1B LTR MaLR 1 364 0 2037 70 4 4 chr12 36591880 36592152 -107194303 + THE1B-int LTR MaLR 1 272 -1308 2228 249 79 28 chr12 36592154 36593896 -107192559 - L1M2 LINE L1 -4221 2886 1028 1396 207 0 29 chr12 36593896 36594176 -107192279 - L1M2 LINE L1 -6758 272 1 282 370 104 45 chr12 36594193 36594272 -107192183 + L3 LINE CR1 910 983 -594 2176 169 51 5 chr12 36594272 36594681 -107191774 + MSTA LTR MaLR 1 428 0 282 370 104 45 chr12 36594681 36595044 -107191411 + L3 LINE CR1 983 1378 -199 502 283 36 7 chr12 36595164 36595302 -107191153 + MIR SINE MIR 1 142 -120 817 279 30 7 chr12 36595306 36595607 -107190848 + MER46C DNA MER2_type 12 319 -19 2122 144 33 30 chr12 36595700 36596062 -107190393 - THE1B LTR MaLR 0 364 2 1147 62 0 0 chr12 36596549 36596693 -107189762 - AluY SINE Alu 0 311 168 2046 185 60 25 chr12 36596858 36597295 -107189160 - MSTB2 LTR MaLR -5 452 1 397 306 197 12 chr12 36598322 36598642 -107187813 - L2 LINE L2 -998 2316 1938 21 71 0 0 chr12 36599099 36599141 -107187314 + AT_rich Low_complexity Low_complexity 1 42 0 2498 201 34 17 chr12 36599225 36599752 -107186703 + MER89 LTR ERV1 1 536 -23 3367 120 12 2 chr12 36599953 36600462 -107185993 + MER75 DNA T2_type 1 514 0 633 286 39 0 chr12 36602075 36602257 -107184198 - MIR SINE MIR -2 260 72 356 160 0 0 chr12 36602453 36602503 -107183952 + MER75 DNA T2_type 22 71 -443 467 108 11 0 chr12 36602520 36602613 -107183842 + (CA)n Simple_repeat Simple_repeat 1 94 0 2330 47 47 3 chr12 36602860 36603158 -107183297 - AluY SINE Alu 0 311 1 909 240 90 49 chr12 36604371 36604738 -107181717 - LTR50 LTR ERVL 0 795 414 948 278 87 10 chr12 36604781 36605080 -107181375 - LTR50 LTR ERVL -472 323 2 2074 221 22 35 chr12 36605179 36605714 -107180741 - L1P LINE L1 -1919 4227 3700 1747 61 13 0 chr12 36605790 36606019 -107180436 - MER75 DNA T2_type -2 512 281 1296 195 57 39 chr12 36606035 36606369 -107180086 - L1P LINE L1 -2486 3660 3321 246 266 25 13 chr12 36606815 36606894 -107179561 + LTR33A LTR ERVL 444 523 0 831 315 36 18 chr12 36607851 36608181 -107178274 + LTR16B LTR ERVL 125 460 -4 1824 329 65 37 chr12 36608221 36608965 -107177490 + HERV16 LTR ERVL 61 840 -4156 5712 76 53 2 chr12 36608965 36609751 -107176704 + LTR12 LTR ERV1 1 826 0 1824 329 65 37 chr12 36609751 36609976 -107176479 + HERV16 LTR ERVL 840 1057 -3939 5342 146 38 41 chr12 36610801 36612290 -107174165 + L1M1 LINE L1 4124 5618 -685 824 0 0 0 chr12 36612359 36612453 -107174002 - L1PA3 LINE L1 -250 5905 5812 1955 13 0 0 chr12 36612453 36612702 -107173753 + L1PA3 LINE L1 5914 6162 0 1125 249 24 45 chr12 36613092 36613474 -107172981 + MLT1A2 LTR MaLR 1 374 0 592 262 6 6 chr12 36613969 36614152 -107172303 + L1MC/D LINE L1 5189 5371 -775 * 6575 86 14 0 chr12 36614148 36615065 -107171390 - L1PA7 LINE L1 -1116 5030 4101 6530 73 14 6 chr12 36615067 36616161 -107170294 + L1PA7 LINE L1 5041 6141 -13 572 51 0 0 chr12 36616165 36616243 -107170212 + L1MC/D LINE L1 5354 5431 -902 947 274 66 51 chr12 36616455 36616925 -107169530 - LTR33 LTR ERVL -3 518 42 2285 77 0 3 chr12 36617050 36617358 -107169097 + AluY SINE Alu 1 307 0 530 183 0 8 chr12 36617580 36617711 -107168744 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 36617993 36618034 -107168421 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 11598 36 3 0 chr12 36618131 36619562 -107166893 - L1P LINE L1 -2096 4050 2615 3817 37 2 0 chr12 36619562 36620017 -107166438 + L1PA3 LINE L1 5696 6152 -3 27 0 0 0 chr12 36620692 36620719 -107165736 + AT_rich Low_complexity Low_complexity 1 27 0 305 379 29 14 chr12 36621464 36621604 -107164851 - MIR3 SINE MIR -51 157 16 348 24 0 0 chr12 36622050 36622091 -107164364 + (CA)n Simple_repeat Simple_repeat 2 42 0 997 237 113 34 chr12 36622091 36622471 -107163984 - HERVL68 LTR ERVL -337 2700 2291 230 326 11 22 chr12 36623036 36623125 -107163330 - MIR SINE MIR -105 157 70 224 59 29 0 chr12 36623319 36623353 -107163102 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 318 327 39 70 chr12 36624047 36624304 -107162151 - MIR SINE MIR -2 260 12 594 239 133 28 chr12 36624444 36624662 -107161793 + L1ME1 LINE L1 36 276 -6120 1371 257 70 4 chr12 36624698 36625200 -107161255 + L1ME1 LINE L1 4708 5242 -973 691 86 0 0 chr12 36625207 36625300 -107161155 - HY3 scRNA scRNA -3 98 6 2469 226 76 38 chr12 36625332 36626268 -107160187 + L1ME1 LINE L1 5284 6231 -4 1639 188 70 25 chr12 36627930 36628146 -107158309 - MLT1B LTR MaLR 0 390 150 1520 189 17 28 chr12 36628146 36628310 -107158145 - AluJb SINE Alu -24 288 127 186 43 0 0 chr12 36628310 36628333 -107158122 + (TG)n Simple_repeat Simple_repeat 2 24 0 1520 189 17 28 chr12 36628333 36628459 -107157996 - AluJb SINE Alu -185 127 1 1639 188 70 25 chr12 36628459 36628597 -107157858 - MLT1B LTR MaLR -240 150 20 437 36 18 0 chr12 36628597 36628653 -107157802 + THE1C LTR MaLR 1 57 -318 * 1283 141 5 19 chr12 36628642 36628855 -107157600 + THE1C LTR MaLR 162 371 -4 324 70 0 0 chr12 36628929 36628972 -107157483 + (CA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr12 36629268 36629293 -107157162 + AT_rich Low_complexity Low_complexity 1 25 0 718 315 172 21 chr12 36629294 36630135 -107156320 + L2 LINE L2 2347 3313 0 279 287 99 10 chr12 36632376 36632477 -107153978 - MIR SINE MIR -133 129 20 26 0 0 0 chr12 36633788 36633814 -107152641 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr12 36634592 36634652 -107151803 + AT_rich Low_complexity Low_complexity 1 60 0 1333 202 0 4 chr12 36635058 36635291 -107151164 - AluJb SINE Alu -27 285 54 576 239 0 0 chr12 36635294 36635403 -107151052 - AluJo/FLAM SINE Alu -201 111 3 446 242 189 8 chr12 36635406 36635538 -107150917 - MER5A DNA MER1_type -6 183 28 733 224 16 42 chr12 36635551 36635743 -107150712 - MER5A DNA MER1_type 0 189 3 378 369 66 21 chr12 36636688 36637067 -107149388 + L2 LINE L2 2249 2644 -670 331 80 0 101 chr12 36638593 36638792 -107147663 + (TA)n Simple_repeat Simple_repeat 2 180 0 388 104 0 109 chr12 36638806 36639008 -107147447 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 14 68 54 chr12 36639105 36639179 -107147276 + (TA)n Simple_repeat Simple_repeat 2 76 0 231 361 56 60 chr12 36639575 36639791 -107146664 + L2 LINE L2 2826 3040 -232 15924 86 99 41 chr12 36639892 36642863 -107143592 + L1PA6 LINE L1 3129 6154 0 9631 175 36 17 chr12 36642879 36644613 -107141842 + L1PA13 LINE L1 3231 5027 -1136 4783 72 12 2 chr12 36644613 36645256 -107141199 + L1PA6 LINE L1 5505 6154 0 9631 175 36 17 chr12 36645256 36646408 -107140047 + L1PA13 LINE L1 5027 6156 -7 2046 157 9 0 chr12 36647256 36647593 -107138862 + L1PA15 LINE L1 5819 6158 -7 349 329 45 61 chr12 36647711 36647957 -107138498 - L1ME4a LINE L1 -164 5957 5716 943 228 13 43 chr12 36648081 36648313 -107138142 - Charlie1a DNA MER1_type -1229 226 2 1170 139 0 0 chr12 36848644 36849616 -106936839 + ALR/Alpha Satellite centromeric 1 972 -74 6170 65 2 2 chr12 36849631 36850436 -106936019 - L1PA3 LINE L1 -3 6152 5348 1429 147 9 0 chr12 36850536 36850760 -106935695 - L1P LINE L1 -5920 226 1 1084 168 8 5 chr12 36850764 36852409 -106934046 - ALR/Alpha Satellite centromeric 0 7691 6052 2823 19 0 0 chr12 36852409 36852720 -106933735 + AluYb8 SINE Alu 1 311 -7 1084 168 8 5 chr12 36852720 36858435 -106928020 - ALR/Alpha Satellite centromeric -1639 6052 1 4240 39 0 170 chr12 36858435 36859204 -106927251 - L1PA3 LINE L1 -1367 4779 4142 7297 37 7 0 chr12 36859204 36860537 -106925918 + L1PA3 LINE L1 4797 6135 -20 264 30 0 0 chr12 36860540 36860573 -106925882 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1066 181 5 2 chr12 36860579 36862289 -106924166 - ALR/Alpha Satellite centromeric 0 1716 1 1020 171 9 2 chr12 36862300 36863285 -106923170 - ALR/Alpha Satellite centromeric 0 991 1 1083 176 5 3 chr12 36863399 36870411 -106916044 - ALR/Alpha Satellite centromeric 0 7024 1 7171 35 0 0 chr12 36870411 36871609 -106914846 - L1PA3 LINE L1 -3 6152 4935 35734 68 3 5 chr12 36871613 36876323 -106910132 - L1PA3 LINE L1 -1445 4701 1 1045 172 4 4 chr12 36876324 36881422 -106905033 - ALR/Alpha Satellite centromeric 0 5101 1 1227 172 4 3 chr12 36881451 36896798 -106889657 - ALR/Alpha Satellite centromeric -1 15367 1 1179 156 2 2 chr12 36897063 36904215 -106882240 - ALR/Alpha Satellite centromeric -3 7150 1 1182 149 8 5 chr12 36904317 36905331 -106881124 - ALR/Alpha Satellite centromeric 0 1017 1 1219 99 5 42 chr12 36905332 36905523 -106880932 + LTR5 LTR ERVK 1 184 -785 2683 125 3 0 chr12 36905533 36905925 -106880530 + LTR5 LTR ERVK 577 969 0 982 158 16 2 chr12 36905925 36906423 -106880032 - ALR/Alpha Satellite centromeric 0 504 1 1053 165 4 6 chr12 36906435 36909691 -106876764 - ALR/Alpha Satellite centromeric -7 3250 1 6479 125 5 3 chr12 36909703 36910670 -106875785 + LTR5 LTR ERVK 1 969 0 1074 174 3 2 chr12 36910670 36912546 -106873909 - ALR/Alpha Satellite centromeric 0 1878 1 1143 168 4 2 chr12 36912558 36914670 -106871785 - ALR/Alpha Satellite centromeric 0 2115 1 1210 159 3 2 chr12 36914770 36919956 -106866499 - ALR/Alpha Satellite centromeric 0 10281 4960 985 56 0 0 chr12 36919956 36920081 -106866374 + L1PA3 LINE L1 6026 6150 -5 1210 159 3 2 chr12 36920081 36925045 -106861410 - ALR/Alpha Satellite centromeric -5321 4960 1 1224 158 6 1 chr12 36925168 36931119 -106855336 + ALR/Alpha Satellite centromeric 1 5980 -31 1167 157 3 3 chr12 36931226 36940055 -106846400 - ALR/Alpha Satellite centromeric 0 8832 1 1255 159 3 2 chr12 36940070 36952000 -106834455 + ALR/Alpha Satellite centromeric 1 12257 -9441 2390 88 0 0 chr12 36952000 36952305 -106834150 + AluY SINE Alu 5 309 -2 1255 159 3 2 chr12 36952305 36961728 -106824727 + ALR/Alpha Satellite centromeric 12257 21672 -26 1154 157 5 2 chr12 36961837 36969659 -106816796 - ALR/Alpha Satellite centromeric -1 7842 1 1279 143 3 1 chr12 36969766 36993038 -106793417 + ALR/Alpha Satellite centromeric 1 23317 -27 40603 68 3 2 chr12 36993039 36999184 -106787271 - L1PA3 LINE L1 -3 6152 2 1176 158 3 0 chr12 36999184 37002959 -106783496 + ALR/Alpha Satellite centromeric 1 3786 -14 1185 154 5 2 chr12 37002973 37014046 -106772409 - ALR/Alpha Satellite centromeric 0 11107 1 37602 64 38 3 chr12 37014046 37019010 -106767445 + L1PA8 LINE L1 1 5141 -1005 4073 93 2 7 chr12 37069010 37069588 -106716867 + L1PA8 LINE L1 5596 6170 -2 1946 144 14 14 chr12 37070590 37070937 -106715518 + MER7A DNA MER2_type 1 345 -1 301 302 113 19 chr12 37071380 37071486 -106714969 + L2 LINE L2 3182 3297 -16 1452 201 0 34 chr12 37072037 37072330 -106714125 + AluJo SINE Alu 9 291 -21 228 262 85 71 chr12 37073829 37073970 -106712485 + L1ME4a LINE L1 5975 6117 -4 1309 199 51 67 chr12 37075797 37076081 -106710374 - MLT1A1 LTR MaLR 0 365 86 2082 131 0 0 chr12 37076081 37076411 -106710044 - AluSg SINE Alu 0 330 1 1309 199 51 67 chr12 37076411 37076496 -106709959 - MLT1A1 LTR MaLR -279 86 1 1257 210 0 12 chr12 37077546 37077789 -106708666 + AluJo SINE Alu 1 240 -72 3471 194 113 83 chr12 37077794 37078932 -106707523 + MER52A LTR ERV1 25 1196 -559 301 222 28 0 chr12 37078922 37078994 -106707461 + MER52A LTR ERV1 1682 1755 0 * 450 111 0 28 chr12 37078994 37079066 -106707389 + AluJo SINE Alu 235 304 -8 1271 245 33 12 chr12 37079625 37079956 -106706499 - MLT1A1 LTR MaLR -2 363 26 1023 326 74 24 chr12 37081487 37082096 -106704359 + L2 LINE L2 2574 3223 -90 9501 210 35 23 chr12 37082104 37082473 -106703982 - L1MB1 LINE L1 -13 6741 6378 826 82 0 34 chr12 37082473 37082620 -106703835 + (TA)n Simple_repeat Simple_repeat 1 142 0 9501 210 35 23 chr12 37082620 37083595 -106702860 - L1MB1 LINE L1 -376 6378 5416 1652 147 0 4 chr12 37083595 37083869 -106702586 - AluSx SINE Alu 0 305 33 9501 210 35 23 chr12 37083869 37085930 -106700525 - L1MB1 LINE L1 -1338 5416 3293 619 325 13 4 chr12 37085944 37086178 -106700277 - L1MB1 LINE L1 -4962 1691 1456 431 340 45 54 chr12 37086361 37086744 -106699711 - L1MB1 LINE L1 -5378 1275 948 516 310 63 34 chr12 37086888 37087156 -106699299 - L1MB1 LINE L1 -5611 1042 767 28 61 0 0 chr12 37087241 37087290 -106699165 + AT_rich Low_complexity Low_complexity 1 49 0 512 208 61 80 chr12 37087321 37087533 -106698922 + L1MC5 LINE L1 6991 7198 -763 1773 161 3 10 chr12 37088105 37088403 -106698052 - AluSx SINE Alu -16 296 1 2113 95 3 14 chr12 37088664 37088960 -106697495 + AluY SINE Alu 1 293 -18 39 68 0 0 chr12 37089647 37089721 -106696734 + AT_rich Low_complexity Low_complexity 1 74 0 1824 135 54 43 chr12 37090156 37090527 -106695928 - THE1C LTR MaLR 0 375 1 1911 153 0 28 chr12 37091966 37092287 -106694168 - AluSx SINE Alu 0 312 1 514 311 142 18 chr12 37093013 37094141 -106692314 + HAL1 LINE L1 133 1120 -1387 210 37 0 0 chr12 37094141 37094168 -106692287 + (CA)n Simple_repeat Simple_repeat 2 28 0 514 311 142 18 chr12 37094168 37094776 -106691679 + HAL1 LINE L1 1120 2143 -364 1295 190 0 13 chr12 37094781 37095007 -106691448 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 37095627 37095662 -106690793 + AT_rich Low_complexity Low_complexity 1 35 0 3007 154 84 24 chr12 37096303 37097073 -106689382 - MER21A LTR ERV1 0 931 1 21 36 0 0 chr12 37097830 37097858 -106688597 + AT_rich Low_complexity Low_complexity 1 28 0 521 42 0 0 chr12 37098320 37098392 -106688063 - L1PA3 LINE L1 -98 6057 5986 761 22 0 0 chr12 37098394 37098483 -106687972 + L1PA3 LINE L1 6063 6151 -4 231 278 37 0 chr12 37098618 37098672 -106687783 - L2 LINE L2 0 3272 3217 1293 211 45 23 chr12 37100533 37100841 -106685614 + MLT1A2 LTR MaLR 60 374 0 382 313 107 25 chr12 37101001 37101282 -106685173 + L1ME4a LINE L1 5644 5947 -174 420 185 12 0 chr12 37101448 37101529 -106684926 - MER94 DNA DNA -49 85 4 222 343 52 30 chr12 37101575 37101709 -106684746 + MIR SINE MIR 81 217 -45 295 137 27 0 chr12 37101911 37101984 -106684471 + (TA)n Simple_repeat Simple_repeat 1 75 0 1876 49 16 8 chr12 37102638 37102883 -106683572 - AluY SINE Alu -1 310 64 21 57 0 0 chr12 37103183 37103218 -106683237 + AT_rich Low_complexity Low_complexity 1 35 0 303 290 91 91 chr12 37104662 37104883 -106681572 + MIR SINE MIR 30 250 -12 272 198 103 52 chr12 37104955 37105071 -106681384 - HAL1b LINE L1 -2 1346 1225 236 128 209 47 chr12 37105043 37105129 -106681326 + L1ME4a LINE L1 5981 6080 -41 * 24 0 0 0 chr12 37105270 37105294 -106681161 + AT_rich Low_complexity Low_complexity 1 24 0 30 83 0 0 chr12 37105368 37105440 -106681015 + AT_rich Low_complexity Low_complexity 1 72 0 1248 217 120 57 chr12 37105661 37105765 -106680690 + MLT1D LTR MaLR 1 97 -408 1982 130 0 16 chr12 37105765 37106081 -106680374 + AluSx SINE Alu 1 311 -1 1248 217 120 57 chr12 37106081 37106451 -106680004 + MLT1D LTR MaLR 97 505 0 379 237 0 11 chr12 37106465 37106558 -106679897 - L1ME3A LINE L1 -285 5885 5794 230 259 0 0 chr12 37106588 37106642 -106679813 - L1ME3A LINE L1 -453 5717 5664 514 309 6 0 chr12 37106647 37106812 -106679643 - L1ME3A LINE L1 -604 5566 5401 263 226 0 0 chr12 37106825 37106878 -106679577 + MER96B DNA MER1_type? 3 55 -120 272 269 78 47 chr12 37106955 37107148 -106679307 - L1ME3A LINE L1 -1816 4330 4132 229 291 0 0 chr12 37107240 37107326 -106679129 + (TCTG)n Simple_repeat Simple_repeat 4 89 0 320 222 0 16 chr12 37107345 37107408 -106679047 + Tigger5 DNA MER2_type 1 62 -2261 1496 147 4 0 chr12 37107429 37107667 -106678788 + Tigger5 DNA MER2_type 2085 2323 0 1676 149 53 53 chr12 37107753 37107948 -106678507 - THE1C LTR MaLR 0 375 178 1877 154 3 10 chr12 37107948 37108240 -106678215 - AluSx SINE Alu -16 296 7 1676 149 53 53 chr12 37108240 37108419 -106678036 - THE1C LTR MaLR -196 179 1 394 363 62 14 chr12 37109003 37109292 -106677163 - HAL1b LINE L1 -415 933 631 22 35 0 0 chr12 37109866 37109895 -106676560 + AT_rich Low_complexity Low_complexity 1 29 0 994 207 36 44 chr12 37110155 37110406 -106676049 - MER96B DNA MER1_type? -168 249 1 400 340 153 0 chr12 37110651 37110854 -106675601 + MIR SINE MIR 25 258 -4 1257 157 143 50 chr12 37112300 37112643 -106673812 + THE1C LTR MaLR 1 375 0 1792 260 36 46 chr12 37112774 37113405 -106673050 - MLT1E2 LTR MaLR -1 625 1 735 247 89 23 chr12 37113644 37113903 -106672552 - L1ME2 LINE L1 -1 6163 5888 234 260 29 48 chr12 37113913 37114017 -106672438 - L1ME2 LINE L1 -356 5814 5713 11563 43 5 2 chr12 37114132 37116346 -106670109 - L1PA4 LINE L1 -9 6146 3928 459 329 25 16 chr12 37117079 37117395 -106669060 - L1MEc LINE L1 -4612 1784 1466 454 343 72 46 chr12 37117432 37118394 -106668061 - L1MEc LINE L1 -5388 1008 22 180 0 0 0 chr12 37118504 37118524 -106667931 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 297 332 83 36 chr12 37118890 37119083 -106667372 - MIR SINE MIR -58 204 3 509 338 101 31 chr12 37119172 37119560 -106666895 - L3 LINE CR1 -1 1576 1162 22 35 0 0 chr12 37121416 37121445 -106665010 + AT_rich Low_complexity Low_complexity 1 29 0 2181 12 0 0 chr12 37121860 37122109 -106664346 - L1HS LINE L1 -2 6153 5905 * 5710 13 0 0 chr12 37122107 37122992 -106663463 + L1HS LINE L1 5022 5906 -249 561 317 39 30 chr12 37123183 37123612 -106662843 + LTR33 LTR ERVL 1 464 -57 711 162 7 37 chr12 37123649 37123785 -106662670 - FLAM_C SINE Alu -1 132 1 547 345 114 11 chr12 37123842 37124438 -106662017 + ERVL LTR ERVL 2882 3593 -2171 1883 317 21 11 chr12 37124492 37125111 -106661344 + ERVL LTR ERVL 4056 4680 -1084 410 333 98 35 chr12 37125994 37126393 -106660062 + LTR33 LTR ERVL 31 454 -67 399 311 179 36 chr12 37126459 37126990 -106659465 + L1 LINE L1 2215 2821 -3325 22 0 0 0 chr12 37127125 37127147 -106659308 + AT_rich Low_complexity Low_complexity 1 22 0 1532 294 94 22 chr12 37128116 37129063 -106657392 - L1ME3A LINE L1 -4 6166 5152 232 309 123 0 chr12 37129084 37129246 -106657209 - L1ME3A LINE L1 -1034 5112 4931 882 265 98 15 chr12 37129252 37129732 -106656723 - L1ME3A LINE L1 -1329 4817 4298 316 340 145 35 chr12 37129753 37130153 -106656302 - L1ME3A LINE L1 -1871 4275 3832 455 204 72 98 chr12 37130190 37130359 -106656096 - L1MC4 LINE L1 -27 8015 7854 1981 145 76 17 chr12 37130359 37130703 -106655752 + THE1B LTR MaLR 1 364 0 455 204 72 98 chr12 37130703 37130797 -106655658 - L1MC4 LINE L1 -188 7854 7759 452 288 54 48 chr12 37130792 37131292 -106655163 - L1ME3A LINE L1 -2299 3847 3345 * 2604 246 69 16 chr12 37131381 37132174 -106654281 - L1ME1 LINE L1 -16 6150 5316 32 0 0 0 chr12 37132174 37132206 -106654249 + AT_rich Low_complexity Low_complexity 1 32 0 184 290 87 43 chr12 37133509 37133647 -106652808 - MIR SINE MIR -54 208 65 656 318 132 41 chr12 37133799 37134435 -106652020 + L2 LINE L2 2544 3245 -68 368 314 64 0 chr12 37134702 37134842 -106651613 + LTR16C LTR ERVL 234 382 -109 291 290 0 0 chr12 37135089 37135151 -106651304 + LTR33 LTR ERVL 307 368 -153 1038 239 58 12 chr12 37135679 37135985 -106650470 - L1ME2 LINE L1 -45 6117 5802 1030 108 0 19 chr12 37135985 37136142 -106650313 - MER4E LTR ERV1 0 766 613 2644 149 12 2 chr12 37136142 37136572 -106649883 + MER57B LTR ERV1 1 434 0 2914 173 11 60 chr12 37136572 37136879 -106649576 + MER57B-int LTR ERV1 1 269 -7268 1967 142 3 0 chr12 37136879 37137175 -106649280 - AluSx SINE Alu -10 302 6 2914 173 11 60 chr12 37137175 37137434 -106649021 + MER57B-int LTR ERV1 269 539 -6998 36 23 0 0 chr12 37137434 37137477 -106648978 + AT_rich Low_complexity Low_complexity 1 43 0 2097 105 0 0 chr12 37137477 37137762 -106648693 - AluY SINE Alu -26 285 1 1871 164 0 0 chr12 37138326 37138624 -106647831 + AluSq SINE Alu 1 298 -15 2177 113 3 0 chr12 37138640 37138941 -106647514 + AluSp SINE Alu 4 305 -8 1363 189 5 2 chr12 37138953 37139232 -106647223 - L1P4 LINE L1 -352 5822 5546 1247 85 28 11 chr12 37139247 37139423 -106647032 - AluY SINE Alu -20 291 113 993 195 0 0 chr12 37139573 37139742 -106646713 - AluSg/x SINE Alu -12 298 130 1893 134 17 3 chr12 37139877 37140168 -106646287 + AluSq SINE Alu 9 303 -10 420 299 52 26 chr12 37140299 37140654 -106645801 + L1ME3A LINE L1 5421 5784 -401 1984 145 3 0 chr12 37140670 37140980 -106645475 - AluSx SINE Alu -1 311 1 1938 126 3 17 chr12 37140980 37141281 -106645174 - AluSc SINE Alu -3 306 9 959 131 0 0 chr12 37141286 37141423 -106645032 - AluSq/x SINE Alu -175 137 1 290 208 52 21 chr12 37141462 37141558 -106644897 + L1ME3A LINE L1 5852 5950 -220 1510 147 4 28 chr12 37141602 37141854 -106644601 + AluSg/x SINE Alu 65 310 -2 311 156 0 0 chr12 37142207 37142252 -106644203 + Alu SINE Alu 2 46 -262 888 265 48 7 chr12 37142279 37142588 -106643867 + L1MA9 LINE L1 5953 6274 -38 1901 141 29 16 chr12 37142614 37142920 -106643535 + AluSg SINE Alu 1 310 0 225 0 0 0 chr12 37142922 37142947 -106643508 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr12 37142946 37142975 -106643480 + (GA)n Simple_repeat Simple_repeat 2 30 0 265 354 63 19 chr12 37143602 37143760 -106642695 + MIR SINE MIR 1 165 -97 4943 169 29 10 chr12 37144284 37145225 -106641230 + L1MC2 LINE L1 5361 6319 -25 21 57 0 0 chr12 37145230 37145265 -106641190 + AT_rich Low_complexity Low_complexity 1 35 0 1830 172 0 0 chr12 37145265 37145550 -106640905 - AluY SINE Alu -24 287 3 872 210 0 0 chr12 37145555 37145712 -106640743 - AluJb SINE Alu -19 293 137 1025 206 9 2 chr12 37145755 37147534 -106638921 - ALR/Alpha Satellite centromeric 0 1791 1 1521 22 0 0 chr12 37147534 37147712 -106638743 - L1PA3 LINE L1 -341 5814 5637 2795 30 0 0 chr12 37147712 37148040 -106638415 + L1PA3 LINE L1 5825 6155 0 878 213 9 7 chr12 37148041 37148975 -106637480 - ALR/Alpha Satellite centromeric 0 1618 394 2171 84 56 0 chr12 37148975 37149261 -106637194 - AluY SINE Alu -9 302 1 878 213 9 7 chr12 37149261 37149656 -106636799 - ALR/Alpha Satellite centromeric -1224 394 1 974 198 7 11 chr12 37149669 37156264 -106630191 - ALR/Alpha Satellite centromeric -1 6568 1 405 284 126 39 chr12 37156464 37156957 -106629498 + SST1 Satellite centromeric 223 758 -805 240 59 0 0 chr12 37157345 37157379 -106629076 + (TG)n Simple_repeat Simple_repeat 1 34 0 413 297 67 61 chr12 37158467 37159005 -106627450 + SST1 Satellite centromeric 132 672 -891 370 291 62 64 chr12 37159431 37159820 -106626635 + SST1 Satellite centromeric 1148 1535 -28 263 184 11 0 chr12 37159826 37159913 -106626542 + (TG)n Simple_repeat Simple_repeat 1 88 0 967 198 6 5 chr12 37160568 37164419 -106622036 - ALR/Alpha Satellite centromeric -1 3852 1 2389 266 69 54 chr12 37164710 37164966 -106621489 + SST1 Satellite centromeric 1 252 -1311 213 65 0 0 chr12 37164966 37164997 -106621458 + (CTGGGG)n Simple_repeat Simple_repeat 3 33 0 2389 266 69 54 chr12 37164997 37166269 -106620186 + SST1 Satellite centromeric 252 1552 -11 324 119 0 0 chr12 37166290 37166349 -106620106 + (TG)n Simple_repeat Simple_repeat 2 60 0 222 220 17 0 chr12 37166349 37166408 -106620047 + CT-rich Low_complexity Low_complexity 2 61 0 2506 266 51 54 chr12 37167148 37167399 -106619056 - SST1 Satellite centromeric -867 2190 1940 260 51 0 26 chr12 37167399 37167438 -106619017 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2506 266 51 54 chr12 37167438 37169346 -106617109 - SST1 Satellite centromeric -1117 1940 1 215 233 17 0 chr12 37170176 37170236 -106616219 + GA-rich Low_complexity Low_complexity 2 62 0 554 198 0 78 chr12 37170260 37170477 -106615978 - SST1 Satellite centromeric -1 1562 1363 468 35 0 0 chr12 37171965 37172023 -106614432 + (TG)n Simple_repeat Simple_repeat 1 58 0 202 91 0 45 chr12 37173047 37173091 -106613364 + (TTA)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr12 37173174 37173199 -106613256 + (CA)n Simple_repeat Simple_repeat 1 25 0 186 127 32 48 chr12 37174698 37174761 -106611694 + G-rich Low_complexity Low_complexity 1 62 0 373 191 0 0 chr12 37175002 37175070 -106611385 + MER53 DNA DNA 122 189 0 244 25 75 0 chr12 37175077 37175117 -106611338 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 10079 29 0 198 chr12 37175117 37176818 -106609637 - SVA Other Other -19 1367 3 186 43 0 0 chr12 37176819 37176842 -106609613 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 910 211 0 0 chr12 37177266 37177432 -106609023 - FRAM SINE Alu 0 166 1 339 78 0 0 chr12 37177784 37177835 -106608620 + (GA)n Simple_repeat Simple_repeat 2 52 0 595 276 198 0 chr12 37180551 37180768 -106605687 + MIR SINE MIR 2 261 -1 929 128 23 41 chr12 37180925 37180967 -106605488 - MER5B DNA MER1_type -1 177 136 2281 110 3 3 chr12 37180967 37181277 -106605178 - AluSq SINE Alu -3 310 1 929 128 23 41 chr12 37181277 37181406 -106605049 - MER5B DNA MER1_type -42 136 9 479 269 48 41 chr12 37182224 37182369 -106604086 + MIR SINE MIR 27 172 -90 415 267 68 78 chr12 37182527 37182718 -106603737 - MIR SINE MIR -61 201 13 * 998 229 24 43 chr12 37182656 37182725 -106603730 + MIR SINE MIR 13 82 -180 2059 123 2 121 chr12 37182725 37183139 -106603316 - MER47A DNA MER2_type -1 365 1 998 229 24 43 chr12 37183139 37183322 -106603133 + MIR SINE MIR 82 260 -2 208 337 41 20 chr12 37184181 37184279 -106602176 - MIR SINE MIR -119 143 44 23 0 0 0 chr12 37184522 37184545 -106601910 + GC_rich Low_complexity Low_complexity 1 23 0 396 310 19 0 chr12 37185009 37185167 -106601288 - MIR3 SINE MIR 0 208 48 317 230 180 0 chr12 37185168 37185268 -106601187 - L2 LINE L2 -2 3270 3153 414 253 11 0 chr12 37186898 37186989 -106599466 - MIR SINE MIR -115 147 56 242 294 64 37 chr12 37187244 37187353 -106599102 + MIR3 SINE MIR 11 122 -86 209 276 16 123 chr12 37188071 37188314 -106598141 - L3b LINE CR1 -189 1394 1178 1342 250 113 26 chr12 37188673 37189215 -106597240 - L2 LINE L2 -23 3290 2697 2076 139 0 0 chr12 37189215 37189503 -106596952 - AluSg SINE Alu -22 288 1 1342 250 113 26 chr12 37189503 37189680 -106596775 - L2 LINE L2 -616 2697 2537 210 158 18 105 chr12 37192018 37192075 -106594380 - MIR3 SINE MIR 0 208 157 2199 124 0 3 chr12 37192270 37192576 -106593879 - AluSx SINE Alu -7 305 1 661 279 60 0 chr12 37192757 37192940 -106593515 - MIR SINE MIR -10 252 59 204 292 21 0 chr12 37193045 37193093 -106593362 - MIR SINE MIR -123 85 37 770 99 9 0 chr12 37193132 37193243 -106593212 - HY1 scRNA scRNA 0 112 1 334 217 19 29 chr12 37193352 37193513 -106592942 + MIR SINE MIR 29 260 -2 22 88 0 0 chr12 37194570 37194627 -106591828 + AT_rich Low_complexity Low_complexity 1 57 0 198 331 83 24 chr12 37196180 37196349 -106590106 + L2 LINE L2 2353 2531 -783 * 364 228 109 0 chr12 37196321 37196413 -106590042 - L2 LINE L2 -10 3303 3202 1383 137 99 99 chr12 37196904 37197197 -106589258 + AluJo SINE Alu 9 301 -11 2002 129 0 3 chr12 37197203 37197490 -106588965 + AluSx SINE Alu 22 307 -5 573 226 83 33 chr12 37198403 37198584 -106587871 + L2 LINE L2 3122 3311 -2 474 263 53 38 chr12 37198601 37198734 -106587721 + L2 LINE L2 3137 3271 -1 1881 166 3 16 chr12 37199146 37199454 -106587001 + AluJb SINE Alu 1 304 -8 404 327 51 0 chr12 37201825 37201981 -106584474 + L2 LINE L2 3101 3264 -8 227 54 27 0 chr12 37202264 37202301 -106584154 + (CA)n Simple_repeat Simple_repeat 2 39 0 325 325 56 0 chr12 37202649 37202775 -106583680 - MIR3 SINE MIR -6 202 70 2120 134 3 3 chr12 37202776 37203081 -106583374 + AluSx SINE Alu 1 305 -7 287 229 0 0 chr12 37203118 37203166 -106583289 - MIR SINE MIR -124 84 37 1708 153 73 0 chr12 37203238 37203499 -106582956 - AluJb SINE Alu -32 280 1 496 225 95 35 chr12 37203499 37203668 -106582787 - MIR SINE MIR -71 191 13 430 273 182 0 chr12 37204406 37204549 -106581906 - MER5A DNA MER1_type 0 189 21 621 342 63 21 chr12 37204690 37204789 -106581666 + L2 LINE L2 2959 3052 -261 2150 105 0 0 chr12 37204789 37205118 -106581337 - AluSp SINE Alu 0 329 1 621 342 63 21 chr12 37205118 37205350 -106581105 + L2 LINE L2 3052 3305 -8 2054 127 7 0 chr12 37205351 37205658 -106580797 + AluSx SINE Alu 1 309 -3 549 333 7 0 chr12 37205996 37206140 -106580315 - L2 LINE L2 -1 3271 3127 318 235 62 0 chr12 37207335 37207416 -106579039 - MIR3 SINE MIR -15 193 108 579 208 125 60 chr12 37208303 37208519 -106577936 - MIR SINE MIR -10 252 23 307 114 0 0 chr12 37208636 37208680 -106577775 + MIR SINE MIR 103 146 -62 347 304 24 8 chr12 37209019 37209144 -106577311 - LTR33 LTR ERVL -5 516 390 375 236 198 62 chr12 37209196 37209438 -106577017 - LTR33 LTR ERVL -235 286 12 313 225 180 18 chr12 37209789 37209900 -106576555 + L2 LINE L2 3142 3270 -2 681 231 87 12 chr12 37210477 37210650 -106575805 + MIR SINE MIR 13 198 -64 709 176 0 0 chr12 37210663 37210771 -106575684 + FLAM_A SINE Alu 1 108 -34 1879 117 34 24 chr12 37210780 37211071 -106575384 - AluSq SINE Alu -19 294 1 1924 140 6 10 chr12 37211719 37212033 -106574422 + AluSq SINE Alu 1 313 0 318 259 206 35 chr12 37212102 37212272 -106574183 + MIR SINE MIR 64 262 0 266 178 0 68 chr12 37212488 37212561 -106573894 + L2 LINE L2 3163 3230 -83 2506 156 13 9 chr12 37213097 37213564 -106572891 + L1MB7 LINE L1 5716 6184 0 319 227 133 0 chr12 37214264 37214339 -106572116 + MIR3 SINE MIR 76 160 -48 466 342 77 0 chr12 37214586 37214782 -106571673 + MIR SINE MIR 49 259 -3 1883 153 0 3 chr12 37214802 37215096 -106571359 - AluSx SINE Alu -19 293 1 359 290 132 87 chr12 37215160 37215563 -106570892 - MLT1J2 LTR MaLR -21 429 9 426 256 160 0 chr12 37215985 37216141 -106570314 + MIR SINE MIR 70 250 -12 259 287 25 96 chr12 37216472 37216629 -106569826 + MIR3 SINE MIR 40 185 -23 1130 243 28 0 chr12 37216993 37217244 -106569211 - MIR SINE MIR 0 262 5 786 230 33 35 chr12 37217243 37217500 -106568955 - MIR SINE MIR 0 262 7 * 2217 289 36 44 chr12 37219998 37221036 -106565419 - SST1 Satellite centromeric -534 1029 1 279 93 0 0 chr12 37221736 37221779 -106564676 + (CA)n Simple_repeat Simple_repeat 2 44 0 250 182 18 0 chr12 37221783 37221838 -106564617 + GA-rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr12 37221843 37221876 -106564579 + (CA)n Simple_repeat Simple_repeat 2 34 0 1205 186 63 107 chr12 37222080 37222462 -106563993 - MLT1A1 LTR MaLR 0 365 1 926 245 88 49 chr12 37222839 37223157 -106563298 - L1P4 LINE L1 -364 5804 5500 2472 108 3 43 chr12 37223157 37223527 -106562928 + THE1A LTR MaLR 1 355 0 11223 114 4 1 chr12 37223527 37225102 -106561353 + THE1A-int LTR MaLR 1 1580 0 2242 141 0 22 chr12 37225102 37225465 -106560990 + THE1A LTR MaLR 1 355 0 926 245 88 49 chr12 37225465 37225749 -106560706 - L1P4 LINE L1 -668 5500 5229 1530 137 105 14 chr12 37225749 37226034 -106560421 - AluSx SINE Alu -1 311 1 926 245 88 49 chr12 37226034 37226515 -106559940 - L1P4 LINE L1 -939 5229 4650 339 247 55 0 chr12 37226517 37226590 -106559865 + L1MC4 LINE L1 6625 6701 -1341 297 0 0 0 chr12 37226590 37226623 -106559832 + (GA)n Simple_repeat Simple_repeat 2 34 0 1485 171 0 38 chr12 37226624 37226916 -106559539 - AluJo SINE Alu -31 281 1 21 36 0 0 chr12 37227675 37227703 -106558752 + AT_rich Low_complexity Low_complexity 1 28 0 1904 142 0 0 chr12 37227879 37228181 -106558274 - AluSq SINE Alu 0 302 1 310 297 30 10 chr12 37228229 37228330 -106558125 - HAL1b LINE L1 -10 1338 1236 1826 140 3 3 chr12 37228423 37228708 -106557747 - AluSq SINE Alu -26 287 3 813 200 28 0 chr12 37228904 37229049 -106557406 - AluJo SINE Alu -162 150 2 645 220 0 0 chr12 37229508 37229649 -106556806 + FLAM_C SINE Alu 1 141 0 709 253 6 0 chr12 37229649 37229815 -106556640 + AluJb SINE Alu 132 298 -14 2143 159 78 8 chr12 37229815 37230199 -106556256 + Tigger1 DNA MER2_type 1066 1476 -942 278 264 94 45 chr12 37231102 37231344 -106555111 + MIR SINE MIR 1 262 0 871 237 98 40 chr12 37231646 37231920 -106554535 + MLT1A2 LTR MaLR 85 374 0 33 0 0 0 chr12 37232993 37233026 -106553429 + AT_rich Low_complexity Low_complexity 1 33 0 1060 191 17 13 chr12 37233295 37233531 -106552924 + AluJb SINE Alu 1 237 -75 299 320 5 25 chr12 37283537 37283729 -106502726 - SST1 Satellite centromeric -1098 465 277 219 36 0 0 chr12 37283729 37283757 -106502698 + (CCCCAG)n Simple_repeat Simple_repeat 2 29 0 246 231 0 0 chr12 37283773 37283825 -106502630 - SST1 Satellite centromeric -1511 52 1 214 272 25 0 chr12 37284526 37284607 -106501848 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 * 221 180 20 0 chr12 37284564 37284614 -106501841 + GA-rich Low_complexity Low_complexity 2 52 0 396 55 0 0 chr12 37284623 37284678 -106501777 + (CA)n Simple_repeat Simple_repeat 2 56 0 2941 279 52 56 chr12 37284699 37286257 -106500198 - SST1 Satellite centromeric -11 1552 1 216 163 0 0 chr12 37286956 37286999 -106499456 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 206 16 0 chr12 37287003 37287066 -106499389 + GA-rich Low_complexity Low_complexity 1 64 0 270 0 0 0 chr12 37288435 37288465 -106497990 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 94 0 0 chr12 37289842 37289874 -106496581 + (GA)n Simple_repeat Simple_repeat 2 33 0 903 291 71 2 chr12 37291207 37291671 -106494784 - L1M4 LINE L1 -3404 2742 2247 26 30 0 0 chr12 37291672 37291705 -106494750 + AT_rich Low_complexity Low_complexity 1 33 0 783 182 176 6 chr12 37291874 37292044 -106494411 - AluSg/x SINE Alu -27 282 84 330 229 84 0 chr12 37292044 37292127 -106494328 + MER119 DNA MER1_type 75 164 -419 2041 132 0 28 chr12 37292797 37293116 -106493339 - AluSg SINE Alu 0 310 1 279 322 42 8 chr12 37293450 37293568 -106492887 - MER94 DNA DNA -2 132 11 1870 223 85 8 chr12 37293666 37294150 -106492305 - MER90 LTR ERV1 0 614 94 198 0 0 0 chr12 37294248 37294270 -106492185 + (T)n Simple_repeat Simple_repeat 1 22 0 547 256 126 14 chr12 37294933 37295140 -106491315 + MIR SINE MIR 30 259 -3 181 250 135 0 chr12 37295556 37295608 -106490847 - MIR SINE MIR -133 75 17 344 243 29 48 chr12 37295665 37295768 -106490687 - MIR SINE MIR -70 192 92 218 369 18 9 chr12 37295982 37296093 -106490362 + L2 LINE L2 2748 2859 -455 438 20 0 0 chr12 37296289 37296340 -106490115 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1715 148 0 24 chr12 37296362 37296653 -106489802 - AluSq SINE Alu -19 294 11 1934 118 17 10 chr12 37296767 37297064 -106489391 - AluSq SINE Alu -14 299 1 908 136 7 0 chr12 37297067 37297207 -106489248 - AluY SINE Alu -170 141 1 204 40 0 0 chr12 37298127 37298152 -106488303 + (CA)n Simple_repeat Simple_repeat 2 26 0 1250 173 120 33 chr12 37298229 37298530 -106487925 - SST1 Satellite centromeric 0 1563 1237 844 164 13 13 chr12 37298535 37298687 -106487768 + AluSg/x SINE Alu 157 308 -4 7404 149 23 17 chr12 37298777 37300161 -106486294 - SST1 Satellite centromeric -170 1393 1 1916 314 59 38 chr12 37300711 37301672 -106484783 - SST1 Satellite centromeric -324 1239 245 324 94 0 0 chr12 37301672 37301725 -106484730 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 1916 314 59 38 chr12 37301725 37301976 -106484479 - SST1 Satellite centromeric -1318 245 1 222 200 30 50 chr12 37302136 37302236 -106484219 + GA-rich Low_complexity Low_complexity 5 102 0 247 203 17 0 chr12 37302783 37302842 -106483613 + GA-rich Low_complexity Low_complexity 1 60 0 462 18 0 0 chr12 37302843 37302898 -106483557 + (CA)n Simple_repeat Simple_repeat 2 56 0 2458 272 45 61 chr12 37302936 37304336 -106482119 - SST1 Satellite centromeric -27 1536 159 203 203 34 0 chr12 37304419 37304478 -106481977 + GA-rich Low_complexity Low_complexity 1 61 0 456 72 0 0 chr12 37304478 37304547 -106481908 + (CA)n Simple_repeat Simple_repeat 2 70 0 2130 267 71 55 chr12 37304568 37305841 -106480614 - SST1 Satellite centromeric -11 1552 255 258 56 0 0 chr12 37305841 37305877 -106480578 + (CCCCAG)n Simple_repeat Simple_repeat 3 38 0 2130 267 71 55 chr12 37305877 37305976 -106480479 - SST1 Satellite centromeric -1308 255 159 651 65 0 0 chr12 37306117 37306210 -106480245 + (CA)n Simple_repeat Simple_repeat 2 94 0 2316 261 57 50 chr12 37306231 37307516 -106478939 - SST1 Satellite centromeric -11 1552 256 267 54 0 0 chr12 37307516 37307553 -106478902 + (CCCCAG)n Simple_repeat Simple_repeat 2 38 0 2316 261 57 50 chr12 37307553 37307652 -106478803 - SST1 Satellite centromeric -1307 256 159 504 68 0 0 chr12 37307794 37307867 -106478588 + (CA)n Simple_repeat Simple_repeat 2 74 0 2451 288 54 42 chr12 37307888 37309171 -106477284 - SST1 Satellite centromeric -11 1552 247 345 75 0 0 chr12 37309171 37309224 -106477231 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 2451 288 54 42 chr12 37309224 37309474 -106476981 - SST1 Satellite centromeric -1316 247 1 211 222 81 30 chr12 37309634 37309733 -106476722 + (CAGGG)n Simple_repeat Simple_repeat 2 105 0 222 220 17 0 chr12 37310281 37310340 -106476115 + GA-rich Low_complexity Low_complexity 2 61 0 465 62 0 0 chr12 37310340 37310405 -106476050 + (CA)n Simple_repeat Simple_repeat 2 66 0 2904 274 69 42 chr12 37310409 37311678 -106474777 - SST1 Satellite centromeric -1 1562 244 216 0 0 0 chr12 37311678 37311702 -106474753 + (CCCCAG)n Simple_repeat Simple_repeat 4 27 0 2904 274 69 42 chr12 37311702 37311953 -106474502 - SST1 Satellite centromeric -1319 244 1 215 192 27 41 chr12 37312690 37312763 -106473692 + (CAGAGA)n Simple_repeat Simple_repeat 6 77 0 2688 278 52 56 chr12 37312764 37314332 -106472123 - SST1 Satellite centromeric -1 1562 1 233 293 0 0 chr12 37315029 37315128 -106471327 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 * 271 217 14 0 chr12 37315075 37315144 -106471311 + GA-rich Low_complexity Low_complexity 2 71 0 279 0 0 0 chr12 37315144 37315175 -106471280 + (CA)n Simple_repeat Simple_repeat 2 32 0 967 211 57 104 chr12 37315379 37315762 -106470693 - MLT1A1 LTR MaLR 0 365 1 256 45 0 45 chr12 37316164 37316208 -106470247 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 691 227 245 9 chr12 37316218 37316544 -106469911 + L1MC3 LINE L1 5965 6367 -1418 2227 122 0 3 chr12 37316561 37316864 -106469591 + AluSx SINE Alu 1 302 -10 676 192 35 20 chr12 37316873 37317041 -106469414 + L1M4 LINE L1 2912 3076 -3070 2758 23 0 0 chr12 37317041 37317342 -106469113 + AluY SINE Alu 1 301 -10 676 192 35 20 chr12 37317342 37317353 -106469102 + L1M4 LINE L1 3076 3085 -3061 2073 113 0 30 chr12 37317353 37317653 -106468802 + AluSx SINE Alu 1 291 -21 676 192 35 20 chr12 37317653 37317679 -106468776 + L1M4 LINE L1 3085 3112 -3034 817 199 6 0 chr12 37317797 37317958 -106468497 - AluJo/FRAM SINE Alu -4 298 137 1323 146 26 0 chr12 37317961 37318187 -106468268 - AluSc SINE Alu -3 306 75 2715 33 0 3 chr12 37318187 37318487 -106467968 - AluY SINE Alu -12 299 1 246 32 0 0 chr12 37318503 37318534 -106467921 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 560 204 9 0 chr12 37318538 37318651 -106467804 - FLAM_C SINE Alu -19 114 1 780 249 63 54 chr12 37318791 37319276 -106467179 - L1ME LINE L1 -678 5488 4997 821 132 0 33 chr12 37319561 37319682 -106466773 - AluY SINE Alu -194 117 1 952 151 53 5 chr12 37320703 37320909 -106465546 + MER33 DNA MER1_type 1 216 -108 1102 245 158 43 chr12 37320931 37321408 -106465047 + L1MC4a LINE L1 7278 7717 -91 824 313 84 15 chr12 37321408 37321871 -106464584 + ERVL LTR ERVL 4120 4614 -1150 338 202 0 19 chr12 37322013 37322117 -106464338 + (ATG)n Simple_repeat Simple_repeat 3 104 0 300 234 21 106 chr12 37322536 37322635 -106463820 - MIR SINE MIR -26 236 151 2359 192 16 4 chr12 37322635 37323124 -106463331 - L1MB2 LINE L1 -7 6164 5670 300 234 21 106 chr12 37323124 37323165 -106463290 - MIR SINE MIR -111 151 108 221 274 32 0 chr12 37323434 37323496 -106462959 - L2 LINE L2 -1 3312 3249 555 293 58 31 chr12 37323639 37323864 -106462591 - MIR SINE MIR -1 261 31 1333 160 0 0 chr12 37324776 37324995 -106461460 + AluSg/x SINE Alu 94 312 0 2159 139 3 0 chr12 37324995 37325304 -106461151 + AluSp SINE Alu 1 310 -3 685 224 12 48 chr12 37325307 37325472 -106460983 + AluJo/FRAM SINE Alu 137 295 -7 680 192 0 0 chr12 37325683 37325803 -106460652 + FLAM_C SINE Alu 2 121 -22 717 19 29 10 chr12 37325803 37325906 -106460549 + (TAAAA)n Simple_repeat Simple_repeat 2 106 0 353 157 0 57 chr12 37325929 37325999 -106460456 + AluJ/FRAM SINE Alu 225 290 -12 1375 193 4 0 chr12 37326459 37326703 -106459752 + AluJb SINE Alu 1 245 -67 1901 140 7 7 chr12 37326703 37327004 -106459451 + AluSx SINE Alu 34 334 0 1324 205 29 33 chr12 37327020 37327327 -106459128 + AluJo SINE Alu 6 311 -1 3580 189 64 28 chr12 37327383 37328116 -106458339 - MER21B LTR ERV1 -1 862 94 2333 89 16 32 chr12 37328116 37328431 -106458024 + AluSx SINE Alu 3 312 0 3580 189 64 28 chr12 37328431 37328529 -106457926 - MER21B LTR ERV1 -769 94 1 1762 182 15 40 chr12 37328830 37329226 -106457229 - LTR25 LTR ERV1 -47 747 362 674 158 9 0 chr12 37329226 37329340 -106457115 + LTR46 LTR ERV1 1 115 -345 578 299 53 10 chr12 37329467 37329674 -106456781 - MIR SINE MIR -15 247 32 348 299 19 0 chr12 37331231 37331338 -106455117 - L2 LINE L2 -18 3254 3146 2279 130 0 0 chr12 37332032 37332339 -106454116 - AluSg SINE Alu -3 307 1 294 305 42 8 chr12 37332675 37332793 -106453662 - MER94 DNA DNA -2 132 11 1777 226 82 10 chr12 37332891 37333377 -106453078 - MER90 LTR ERV1 0 614 94 527 251 128 15 chr12 37334148 37334351 -106452104 + MIR SINE MIR 30 255 -7 363 214 48 68 chr12 37334880 37334983 -106451472 - MIR SINE MIR -70 192 92 186 408 10 0 chr12 37335197 37335300 -106451155 + L2 LINE L2 2748 2851 -463 312 70 0 0 chr12 37335504 37335547 -106450908 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1852 141 0 24 chr12 37335569 37335860 -106450595 - AluSq SINE Alu -19 294 11 2064 108 20 10 chr12 37335974 37336271 -106450184 - AluSq SINE Alu -13 300 1 954 128 14 0 chr12 37336272 37336413 -106450042 - AluY SINE Alu -168 143 1 1252 173 120 33 chr12 37337433 37337734 -106448721 - SST1 Satellite centromeric 0 1563 1237 885 161 13 7 chr12 37337739 37337894 -106448561 + AluSg/x SINE Alu 157 312 0 7204 154 20 26 chr12 37337986 37339388 -106447067 - SST1 Satellite centromeric -170 1393 1 2176 274 52 36 chr12 37340210 37340899 -106445556 - SST1 Satellite centromeric -607 956 246 243 61 0 0 chr12 37340899 37340932 -106445523 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 2176 274 52 36 chr12 37340932 37341183 -106445272 - SST1 Satellite centromeric -1316 247 1 363 98 0 0 chr12 37341975 37342036 -106444419 + (CA)n Simple_repeat Simple_repeat 2 62 0 2194 279 41 47 chr12 37342057 37343303 -106443152 - SST1 Satellite centromeric -11 1552 315 308 238 69 20 chr12 37343471 37343572 -106442883 - L1ME3A LINE L1 -221 5949 5844 23 0 0 0 chr12 37343628 37343651 -106442804 + AT_rich Low_complexity Low_complexity 1 23 0 346 321 108 12 chr12 37343665 37343974 -106442481 - L1ME3A LINE L1 -479 5642 5322 1017 128 0 0 chr12 37344112 37344253 -106442202 - AluSg/x SINE Alu -18 292 152 3651 187 54 7 chr12 37344254 37345329 -106441126 - L1MB7 LINE L1 -69 6115 4997 662 323 123 38 chr12 37345488 37345887 -106440568 - L1MEc LINE L1 -4576 1734 1302 627 266 94 12 chr12 37345895 37346214 -106440241 - L1MEc LINE L1 -4879 1240 896 277 333 34 54 chr12 37346334 37346481 -106439974 + MIR SINE MIR 100 243 -19 378 323 134 28 chr12 37346490 37346744 -106439711 + L1M4 LINE L1 4385 4665 -1481 2194 120 7 0 chr12 37346747 37347055 -106439400 + AluY SINE Alu 1 310 -1 482 261 52 33 chr12 37347674 37347827 -106438628 - MIR SINE MIR -99 163 8 643 245 107 15 chr12 37347867 37348063 -106438392 + MIR SINE MIR 48 261 -1 444 226 0 0 chr12 37348938 37349062 -106437393 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 283 304 128 14 chr12 37349509 37349666 -106436789 + MIR SINE MIR 40 204 -58 315 203 0 0 chr12 37349765 37349824 -106436631 - MIR SINE MIR -89 119 61 308 260 80 0 chr12 37349832 37349932 -106436523 + MIR SINE MIR 35 142 -66 184 340 181 17 chr12 37351339 37351577 -106434878 - L2 LINE L2 -459 2855 2579 369 229 0 0 chr12 37352246 37352351 -106434104 + (ATG)n Simple_repeat Simple_repeat 3 107 0 566 210 0 11 chr12 37352377 37352558 -106433897 + (ATG)n Simple_repeat Simple_repeat 2 180 0 255 264 24 56 chr12 37352764 37352889 -106433566 - L1ME LINE L1 -544 5620 5500 2266 106 11 44 chr12 37352896 37353263 -106433192 + THE1A LTR MaLR 1 355 0 10370 124 7 1 chr12 37353263 37354833 -106431622 + THE1A-int LTR MaLR 1 1580 0 2239 143 14 22 chr12 37354833 37355191 -106431264 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr12 37355362 37355384 -106431071 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 37356296 37356321 -106430134 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr12 37356989 37357042 -106429413 + AT_rich Low_complexity Low_complexity 1 53 0 247 291 29 80 chr12 37358306 37358481 -106427974 + MLT1E2 LTR MaLR 8 173 -453 671 150 52 146 chr12 37360413 37360680 -106425775 - L1MA9 LINE L1 -1 6311 6070 1508 196 39 4 chr12 37360697 37360977 -106425478 - AluJo SINE Alu -11 301 12 1956 201 51 32 chr12 37360988 37362144 -106424311 - L1MA9 LINE L1 -527 5785 4560 2198 104 0 36 chr12 37362144 37362453 -106424002 - AluSx SINE Alu -12 300 3 1956 201 51 32 chr12 37362453 37362765 -106423690 - L1MA9 LINE L1 -1752 4560 4255 243 0 0 0 chr12 37363156 37363183 -106423272 + (TG)n Simple_repeat Simple_repeat 2 28 0 1155 284 52 36 chr12 37363602 37364400 -106422055 + L1M4 LINE L1 3396 4266 -1880 1273 186 49 85 chr12 37364400 37364788 -106421667 - LTR47B LTR ERVL -69 374 1 2141 349 58 15 chr12 37364982 37366127 -106420328 - PABL_B-int LTR ERV1 -321 6801 5607 523 316 62 62 chr12 37366766 37367251 -106419204 - HERVL18 LTR ERVL -1249 4206 3610 250 386 15 10 chr12 37368351 37368548 -106417907 - HERVL18 LTR ERVL -4326 1721 1524 190 229 24 108 chr12 37370222 37370305 -106416150 + MIR SINE MIR 117 192 -70 181 333 0 42 chr12 37371609 37371681 -106414774 + MIR3 SINE MIR 102 170 -38 1286 168 47 33 chr12 37372951 37373225 -106413230 + L1MB3 LINE L1 5904 6181 -2 443 275 8 8 chr12 37373234 37373365 -106413090 + L1ME3A LINE L1 5821 5951 -219 687 277 146 29 chr12 37373557 37374037 -106412418 + L1ME LINE L1 511 1046 -5024 3314 171 78 119 chr12 37374635 37375453 -106411002 - LTR1 LTR ERV1 0 785 1 207 300 0 0 chr12 37375991 37376051 -106410404 + G-rich Low_complexity Low_complexity 1 60 0 454 214 11 0 chr12 37377023 37377112 -106409343 + MER33 DNA MER1_type 9 98 -226 309 51 0 0 chr12 37377133 37377172 -106409283 + (TG)n Simple_repeat Simple_repeat 2 40 0 622 193 104 83 chr12 37377745 37377937 -106408518 - MLT1A1 LTR MaLR -169 196 1 895 243 91 61 chr12 37378310 37378634 -106407821 - L1P4 LINE L1 -364 5804 5491 2581 105 3 43 chr12 37378634 37379004 -106407451 + THE1A LTR MaLR 1 355 0 11713 120 2 1 chr12 37379004 37380582 -106405873 + THE1A-int LTR MaLR 1 1580 0 2306 139 11 22 chr12 37380582 37380941 -106405514 + THE1A LTR MaLR 1 355 0 895 243 91 61 chr12 37380941 37381225 -106405230 - L1P4 LINE L1 -677 5491 5217 1510 140 105 25 chr12 37381225 37381511 -106404944 - AluSx SINE Alu -3 309 1 895 243 91 61 chr12 37381511 37381996 -106404459 - L1P4 LINE L1 -951 5217 4647 198 0 0 0 chr12 37382002 37382024 -106404431 + (GA)n Simple_repeat Simple_repeat 2 23 0 1439 189 0 42 chr12 37382024 37382310 -106404145 - AluJo SINE Alu -38 274 1 21 36 0 0 chr12 37383075 37383103 -106403352 + AT_rich Low_complexity Low_complexity 1 28 0 2113 142 0 0 chr12 37383279 37383582 -106402873 - AluSq SINE Alu -10 303 1 1855 147 3 3 chr12 37383828 37384114 -106402341 - AluSq SINE Alu -25 288 3 848 189 0 0 chr12 37384337 37384469 -106401986 - FLAM_C SINE Alu -1 132 1 1449 204 32 3 chr12 37384924 37385047 -106401408 + AluJb SINE Alu 1 119 -193 294 29 0 0 chr12 37385047 37385082 -106401373 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1449 204 32 3 chr12 37385082 37385243 -106401212 + AluJb SINE Alu 119 293 -19 329 134 354 37 chr12 37385246 37385328 -106401127 + Tigger1 DNA MER2_type 1066 1173 -1245 598 117 0 10 chr12 37385328 37385431 -106401024 + L1P LINE L1 3856 3957 -2189 777 269 72 15 chr12 37385604 37385938 -106400517 - L1M4 LINE L1 -1147 4999 4647 1094 74 0 9 chr12 37385950 37386180 -106400275 + (TA)n Simple_repeat Simple_repeat 1 228 0 1506 192 0 34 chr12 37386190 37386482 -106399973 - AluJo SINE Alu -30 282 1 2152 110 0 0 chr12 37387448 37387750 -106398705 - AluSq SINE Alu 0 302 1 1884 164 0 3 chr12 37387995 37388282 -106398173 - AluSq SINE Alu -25 288 3 200 152 212 30 chr12 37388403 37388469 -106397986 + MIR3 SINE MIR 129 206 -2 776 199 0 8 chr12 37388513 37388644 -106397811 - FLAM_C SINE Alu -3 130 1 1626 177 3 36 chr12 37389103 37389408 -106397047 + AluJb SINE Alu 1 295 -17 588 111 248 26 chr12 37389410 37389527 -106396928 + Tigger1 DNA MER2_type 1066 1208 -1210 * 5277 140 0 45 chr12 37389515 37389755 -106396700 + Tigger1 DNA MER2_type 1545 1794 -624 2088 128 3 0 chr12 37389755 37390043 -106396412 - AluSp SINE Alu -24 289 1 5277 140 0 45 chr12 37390043 37390578 -106395877 + Tigger1 DNA MER2_type 1794 2275 -143 1794 136 66 0 chr12 37390578 37390850 -106395605 - AluSx SINE Alu -21 291 2 5277 140 0 45 chr12 37390850 37390988 -106395467 + Tigger1 DNA MER2_type 2275 2418 0 387 277 17 8 chr12 37390988 37391106 -106395349 - LTR16C LTR ERVL -14 477 359 246 232 18 0 chr12 37391474 37391530 -106394925 + MER115 DNA AcHobo 15 71 -622 903 298 111 31 chr12 37391545 37391961 -106394494 + MER115 DNA AcHobo 195 643 -50 1743 136 3 17 chr12 37392367 37392654 -106393801 - L1MA4 LINE L1 0 6300 6018 396 226 73 150 chr12 37392939 37393173 -106393282 - MIR SINE MIR 0 262 47 1923 129 0 41 chr12 37393275 37393592 -106392863 + AluSx SINE Alu 1 305 0 305 320 50 0 chr12 37393686 37393786 -106392669 - L2 LINE L2 -15 3298 3194 434 325 62 21 chr12 37394340 37394534 -106391921 - MIR SINE MIR -12 250 49 2312 57 4 0 chr12 37394545 37394824 -106391631 + L1PA3 LINE L1 5874 6153 -2 343 283 41 14 chr12 37395273 37395418 -106391037 + L1M4 LINE L1 3717 3865 -2281 610 111 0 11 chr12 37395514 37395604 -106390851 - L1PA16 LINE L1 -9 6157 6069 724 193 9 0 chr12 37395842 37395956 -106390499 + FLAM_A SINE Alu 1 115 -18 1851 144 3 0 chr12 37396376 37396718 -106389737 - AluSq SINE Alu 0 343 1 2115 114 3 0 chr12 37396720 37397010 -106389445 - AluSx SINE Alu -21 291 1 1161 128 0 6 chr12 37397013 37397192 -106389263 - AluSq SINE Alu -5 308 131 23 0 0 0 chr12 37397194 37397217 -106389238 + AT_rich Low_complexity Low_complexity 1 23 0 527 139 0 0 chr12 37397436 37397515 -106388940 + AluY SINE Alu 217 295 -16 1914 145 3 13 chr12 37397808 37398111 -106388344 + AluSx SINE Alu 1 300 -12 389 136 0 12 chr12 37398382 37398399 -106388056 + (GAAA)n Simple_repeat Simple_repeat 3 19 -63 2067 155 7 0 chr12 37398399 37398709 -106387746 + AluSx SINE Alu 1 312 0 389 136 0 12 chr12 37398709 37398772 -106387683 + (GAAA)n Simple_repeat Simple_repeat 19 82 0 1751 179 10 13 chr12 37399577 37399884 -106386571 - AluJb SINE Alu -6 306 1 2060 113 10 14 chr12 37399952 37400264 -106386191 + AluSp SINE Alu 1 311 0 1906 168 0 26 chr12 37400339 37400649 -106385806 + AluJb SINE Alu 1 302 -10 2115 128 0 0 chr12 37400649 37400945 -106385510 + AluSc SINE Alu 1 296 -13 1600 150 30 4 chr12 37400945 37401212 -106385243 - MER54A LTR ERVL -627 274 1 1613 139 143 0 chr12 37401395 37401654 -106384801 - AluSx SINE Alu -6 296 1 2115 127 3 0 chr12 37402254 37402553 -106383902 - AluSp SINE Alu -13 300 1 945 198 5 27 chr12 37402558 37402745 -106383710 - AluSg/x SINE Alu -17 293 111 20230 87 7 13 chr12 37402895 37406445 -106380010 - L1P LINE L1 -1546 4600 1072 826 241 229 4 chr12 37406548 37406814 -106379641 - MER93a LTR ERV1 -73 329 4 2459 182 43 63 chr12 37407288 37407777 -106378678 + L1MB4 LINE L1 5099 5596 -584 1453 166 0 0 chr12 37407777 37408006 -106378449 + AluSg SINE Alu 1 229 -81 2459 182 43 63 chr12 37408006 37408029 -106378426 + L1MB4 LINE L1 5596 5618 -562 312 27 0 0 chr12 37408029 37408066 -106378389 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2459 182 43 63 chr12 37408066 37408292 -106378163 + L1MB4 LINE L1 5618 5831 -349 22 35 0 0 chr12 37408366 37408395 -106378060 + AT_rich Low_complexity Low_complexity 1 29 0 8087 112 5 18 chr12 37409387 37410675 -106375780 + L1PA8 LINE L1 4047 5343 -829 2092 108 7 17 chr12 37410675 37410972 -106375483 + AluSq SINE Alu 1 294 -19 8087 112 5 18 chr12 37410972 37411792 -106374663 + L1PA8 LINE L1 5343 6172 0 2002 150 11 11 chr12 37412789 37413136 -106373319 + MER7A DNA MER2_type 1 345 -1 235 331 7 47 chr12 37413508 37413656 -106372799 + L2 LINE L2 3117 3258 -55 1383 219 0 34 chr12 37414215 37414512 -106371943 + AluJo SINE Alu 3 289 -23 27 29 0 0 chr12 37414787 37414821 -106371634 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 37415025 37415074 -106371381 + AT_rich Low_complexity Low_complexity 1 49 0 1366 197 51 67 chr12 37417983 37418267 -106368188 - MLT1A1 LTR MaLR 0 365 86 2140 118 0 0 chr12 37418267 37418597 -106367858 - AluSg SINE Alu 0 330 1 1366 197 51 67 chr12 37418597 37418682 -106367773 - MLT1A1 LTR MaLR -279 86 1 1229 204 0 17 chr12 37419734 37419974 -106366481 + AluJo SINE Alu 1 236 -76 3503 199 111 81 chr12 37419983 37421121 -106365334 + MER52A LTR ERV1 25 1196 -559 300 250 28 0 chr12 37421111 37421183 -106365272 + MER52A LTR ERV1 1682 1755 0 * 408 121 0 30 chr12 37421183 37421249 -106365206 + AluJo SINE Alu 235 298 -14 1178 245 49 12 chr12 37421812 37422138 -106364317 - MLT1A1 LTR MaLR -2 363 26 1080 334 66 19 chr12 37423674 37424281 -106362174 + L2 LINE L2 2574 3223 -90 1636 216 22 0 chr12 37424289 37424655 -106361800 - L1MB1 LINE L1 -13 5979 5606 403 117 10 39 chr12 37424655 37424758 -106361697 + (TA)n Simple_repeat Simple_repeat 1 100 0 9023 206 51 27 chr12 37424758 37425748 -106360707 - L1MB1 LINE L1 -375 5617 4652 1877 128 0 4 chr12 37425748 37426022 -106360433 - AluSx SINE Alu -7 305 33 9023 206 51 27 chr12 37426022 37428045 -106358410 - L1MB1 LINE L1 -1340 4652 2531 645 316 12 8 chr12 37428060 37428304 -106358151 - L1MB1 LINE L1 -4991 910 666 422 352 37 68 chr12 37428474 37428859 -106357596 - L1MB1 LINE L1 -5278 613 203 546 324 55 42 chr12 37428959 37429271 -106357184 - L1MB1 LINE L1 -5571 320 5 35 41 0 0 chr12 37429356 37429405 -106357050 + AT_rich Low_complexity Low_complexity 1 49 0 535 222 61 51 chr12 37429436 37429701 -106356754 + L1MC5 LINE L1 6991 7250 -733 1908 147 0 10 chr12 37430225 37430524 -106355931 - AluSx SINE Alu -16 296 1 2148 85 3 33 chr12 37430785 37431092 -106355363 + AluY SINE Alu 1 298 -13 1850 132 51 43 chr12 37432270 37432642 -106353813 - THE1C LTR MaLR 0 375 1 242 239 61 117 chr12 37433780 37433943 -106352512 + MER20B DNA MER1_type 20 173 -610 1915 142 0 30 chr12 37434095 37434430 -106352025 - AluSx SINE Alu 0 326 1 832 314 144 15 chr12 37435157 37436278 -106350177 + HAL1 LINE L1 133 1108 -1399 372 22 0 0 chr12 37436278 37436323 -106350132 + (CA)n Simple_repeat Simple_repeat 2 46 0 832 314 144 15 chr12 37436323 37436931 -106349524 + HAL1 LINE L1 1108 2143 -364 1261 199 0 13 chr12 37436936 37437162 -106349293 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 37437780 37437815 -106348640 + AT_rich Low_complexity Low_complexity 1 35 0 2908 161 91 24 chr12 37438456 37439220 -106347235 - MER21A LTR ERV1 0 931 1 536 28 0 0 chr12 37440470 37440542 -106345913 - L1PA3 LINE L1 -98 6057 5986 725 12 0 0 chr12 37440544 37440649 -106345806 + L1PA3 LINE L1 6063 6167 0 225 278 37 0 chr12 37440772 37440826 -106345629 - L2 LINE L2 0 3313 3258 192 97 0 0 chr12 37441306 37441337 -106345118 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1267 211 45 23 chr12 37442701 37443009 -106343446 + MLT1A2 LTR MaLR 60 374 0 409 321 108 11 chr12 37443169 37443446 -106343009 + L1ME4a LINE L1 5644 5947 -174 421 185 12 0 chr12 37443612 37443693 -106342762 - MER94 DNA DNA -49 85 4 378 0 0 0 chr12 37444063 37444105 -106342350 + (TA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr12 37444122 37444154 -106342301 + AT_rich Low_complexity Low_complexity 1 32 0 1862 61 16 4 chr12 37444799 37445044 -106341411 - AluY SINE Alu 0 311 64 291 290 95 95 chr12 37446802 37447023 -106339432 + MIR SINE MIR 30 250 -12 278 190 103 52 chr12 37447095 37447211 -106339244 - HAL1b LINE L1 -2 1346 1225 255 125 182 45 chr12 37447183 37447271 -106339184 + L1ME4a LINE L1 5981 6080 -41 * 306 224 65 37 chr12 37447366 37447473 -106338982 - HAL1b LINE L1 -145 1203 1094 22 0 0 0 chr12 37447506 37447528 -106338927 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 37447545 37447577 -106338878 + AT_rich Low_complexity Low_complexity 1 32 0 1258 224 123 35 chr12 37447799 37447903 -106338552 + MLT1D LTR MaLR 1 94 -411 2120 114 0 16 chr12 37447903 37448220 -106338235 + AluSx SINE Alu 1 312 0 1258 224 123 35 chr12 37448220 37448579 -106337876 + MLT1D LTR MaLR 94 505 0 394 212 0 12 chr12 37448601 37448686 -106337769 - L1ME3A LINE L1 -293 5877 5794 230 259 0 0 chr12 37448716 37448770 -106337685 - L1ME3A LINE L1 -453 5717 5664 564 297 6 0 chr12 37448775 37448940 -106337515 - L1ME3A LINE L1 -604 5566 5401 292 294 0 0 chr12 37448951 37449019 -106337436 + MER96B DNA MER1_type? 1 68 -107 312 266 75 45 chr12 37449077 37449276 -106337179 - L1ME3A LINE L1 -1810 4336 4132 220 259 0 0 chr12 37449369 37449423 -106337032 + CT-rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr12 37449424 37449456 -106336999 + (TG)n Simple_repeat Simple_repeat 2 33 0 343 204 45 34 chr12 37449475 37449563 -106336892 + Tigger5 DNA MER2_type 1 89 -2234 * 1474 147 4 0 chr12 37449559 37449797 -106336658 + Tigger5 DNA MER2_type 2085 2323 0 1561 153 65 57 chr12 37449881 37450076 -106336379 - THE1C LTR MaLR 0 375 174 1854 149 14 7 chr12 37450076 37450364 -106336091 - AluSx SINE Alu -16 296 7 1561 153 65 57 chr12 37450364 37450540 -106335915 - THE1C LTR MaLR -201 174 1 22 35 0 0 chr12 37451992 37452021 -106334434 + AT_rich Low_complexity Low_complexity 1 29 0 1111 200 20 43 chr12 37452281 37452536 -106333919 - MER96B DNA MER1_type? -168 249 1 383 340 160 0 chr12 37452781 37452975 -106333480 + MIR SINE MIR 25 249 -13 1250 166 125 35 chr12 37454541 37454885 -106331570 + THE1C LTR MaLR 1 375 0 1841 254 40 49 chr12 37455016 37455647 -106330808 - MLT1E2 LTR MaLR -1 625 1 746 236 96 23 chr12 37455887 37456262 -106330193 - L1ME2 LINE L1 -1 6163 5710 11806 45 6 4 chr12 37456380 37458578 -106327877 - L1PA5 LINE L1 -20 6134 3928 462 313 29 19 chr12 37459305 37459621 -106326834 - L1MEc LINE L1 -4612 1784 1466 437 328 89 53 chr12 37459662 37460607 -106325848 - L1MEc LINE L1 -5382 1014 36 225 0 0 0 chr12 37460731 37460756 -106325699 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 337 53 37 chr12 37461128 37461318 -106325137 - MIR SINE MIR -67 195 3 515 335 100 25 chr12 37461407 37461807 -106324648 - L3 LINE CR1 -1 1576 1147 22 35 0 0 chr12 37463652 37463681 -106322774 + AT_rich Low_complexity Low_complexity 1 29 0 614 301 39 27 chr12 37464267 37464695 -106321760 + LTR33 LTR ERVL 1 464 -57 818 134 7 35 chr12 37464721 37464863 -106321592 - FLAM_C SINE Alu 0 143 6 470 334 43 11 chr12 37464925 37465521 -106320934 + ERVL LTR ERVL 2882 3593 -2171 1819 327 25 12 chr12 37465555 37466304 -106320151 + ERVL LTR ERVL 3995 4763 -891 436 322 101 35 chr12 37467077 37467475 -106318980 + LTR33 LTR ERVL 31 454 -67 365 268 85 64 chr12 37467541 37467776 -106318679 + L1M4 LINE L1 2215 2454 -3692 305 382 0 0 chr12 37467941 37468072 -106318383 + L1M4 LINE L1 2691 2821 -3325 21 36 0 0 chr12 37468112 37468140 -106318315 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 37468205 37468227 -106318228 + AT_rich Low_complexity Low_complexity 1 22 0 1474 299 90 18 chr12 37469192 37470073 -106316382 - L1ME3A LINE L1 -4 6166 5225 853 296 94 16 chr12 37470333 37471081 -106315374 - L1ME3A LINE L1 -1329 4817 4012 386 212 64 91 chr12 37471269 37471438 -106315017 - L1MC4 LINE L1 -27 8015 7854 2054 137 76 17 chr12 37471438 37471782 -106314673 + THE1B LTR MaLR 1 364 0 386 212 64 91 chr12 37471782 37471876 -106314579 - L1MC4 LINE L1 -188 7854 7759 300 298 48 52 chr12 37471871 37472392 -106314063 - L1ME3A LINE L1 -2299 3847 3329 * 231 254 0 0 chr12 37472401 37472460 -106313995 - L1ME1 LINE L1 -7 6159 6101 2476 241 83 19 chr12 37472460 37473254 -106313201 - L1ME1 LINE L1 -6 6160 5316 25 31 0 0 chr12 37473254 37473286 -106313169 + AT_rich Low_complexity Low_complexity 1 32 0 215 268 87 47 chr12 37474585 37474712 -106311743 - MIR SINE MIR -54 208 77 704 335 122 17 chr12 37474875 37475371 -106311084 + L2 LINE L2 2544 3107 -206 422 293 64 0 chr12 37475763 37475903 -106310552 + LTR16C LTR ERVL 234 382 -109 336 317 101 25 chr12 37476150 37476349 -106310106 + LTR33 LTR ERVL 307 520 -1 234 0 0 0 chr12 37476721 37476747 -106309708 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1120 238 22 12 chr12 37476753 37477069 -106309386 - L1ME2 LINE L1 -45 6117 5802 1061 102 0 19 chr12 37477069 37477226 -106309229 - MER4E LTR ERV1 0 766 613 2677 140 14 2 chr12 37477226 37477655 -106308800 + MER57B LTR ERV1 1 434 0 2937 168 11 58 chr12 37477655 37477962 -106308493 + MER57B-int LTR ERV1 1 270 -7267 2014 145 0 0 chr12 37477962 37478259 -106308196 - AluSx SINE Alu -12 300 4 2937 168 11 58 chr12 37478259 37478517 -106307938 + MER57B-int LTR ERV1 270 539 -6998 30 27 0 0 chr12 37478517 37478554 -106307901 + AT_rich Low_complexity Low_complexity 1 37 0 2039 126 0 0 chr12 37478554 37478839 -106307616 - AluY SINE Alu -26 285 1 2064 141 0 0 chr12 37479435 37479733 -106306722 + AluSq SINE Alu 1 298 -15 2060 111 4 0 chr12 37479749 37480051 -106306404 + AluSp SINE Alu 4 306 0 183 80 0 0 chr12 37480071 37480096 -106306359 + (TG)n Simple_repeat Simple_repeat 2 26 0 232 133 0 80 chr12 37480098 37480173 -106306282 + LTR66 LTR ERVL 394 462 -148 1086 184 5 0 chr12 37480184 37480380 -106306075 - L1M2 LINE L1 -549 5742 5546 1376 87 5 11 chr12 37480394 37480578 -106305877 - AluY SINE Alu -16 295 113 1110 168 0 6 chr12 37480744 37480923 -106305532 - AluSg/x SINE Alu -13 299 122 2121 127 7 3 chr12 37481036 37481344 -106305111 + AluSq SINE Alu 1 309 -4 401 315 108 30 chr12 37481475 37481833 -106304622 + L1ME3A LINE L1 5421 5750 -420 1848 161 3 0 chr12 37481833 37482137 -106304318 - AluSx SINE Alu -7 305 1 2019 125 3 35 chr12 37482137 37482305 -106304150 - AluSx SINE Alu -11 301 146 1983 122 24 0 chr12 37482305 37482592 -106303863 - AluY SINE Alu -9 302 9 2019 125 3 35 chr12 37482592 37482734 -106303721 - AluSx SINE Alu -166 146 1 401 315 108 30 chr12 37482734 37482866 -106303589 + L1ME3A LINE L1 5749 5950 -220 1663 115 4 28 chr12 37482910 37483162 -106303293 + AluSg/x SINE Alu 65 310 -2 316 109 0 22 chr12 37483517 37483563 -106302892 + Alu SINE Alu 2 46 -257 742 257 74 19 chr12 37483582 37483905 -106302550 + L1MA9 LINE L1 5934 6274 -38 1714 155 35 18 chr12 37483931 37484215 -106302240 + AluSg SINE Alu 1 289 -21 315 0 0 0 chr12 37484234 37484269 -106302186 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 342 71 19 chr12 37484907 37485062 -106301393 + MIR SINE MIR 12 174 -88 4709 178 30 12 chr12 37485582 37486546 -106299909 + L1MC2 LINE L1 5361 6341 -3 1995 149 0 0 chr12 37486560 37486849 -106299606 - AluY SINE Alu -20 291 3 930 204 0 0 chr12 37486854 37487011 -106299444 - AluJb SINE Alu -19 293 137 978 206 9 6 chr12 37487054 37489769 -106296686 - ALR/Alpha Satellite centromeric 0 3412 708 221 0 35 0 chr12 37489769 37489798 -106296657 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1982 95 61 0 chr12 37489798 37490061 -106296394 - AluY SINE Alu -32 279 1 978 206 9 6 chr12 37490061 37490455 -106296000 - ALR/Alpha Satellite centromeric -2703 709 1 918 196 11 6 chr12 37490468 37492602 -106293853 - ALR/Alpha Satellite centromeric -4 2143 1 207 0 0 0 chr12 37492608 37492631 -106293824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 952 200 7 12 chr12 37492632 37497069 -106289386 - ALR/Alpha Satellite centromeric 0 4415 1 546 284 78 55 chr12 37497236 37497708 -106288747 + SST1 Satellite centromeric 190 672 -891 328 284 65 19 chr12 37497948 37498103 -106288352 + SST1 Satellite centromeric 1391 1552 -11 219 88 0 0 chr12 37498149 37498183 -106288272 + (TG)n Simple_repeat Simple_repeat 1 34 0 604 314 60 52 chr12 37499186 37499814 -106286641 + SST1 Satellite centromeric 40 672 -891 408 303 59 64 chr12 37500221 37500630 -106285825 + SST1 Satellite centromeric 1130 1536 -27 353 165 10 0 chr12 37500635 37500732 -106285723 + (TG)n Simple_repeat Simple_repeat 1 98 0 1024 196 8 6 chr12 37501376 37505251 -106281204 - ALR/Alpha Satellite centromeric -8 3880 1 2483 276 54 45 chr12 37505542 37505798 -106280657 + SST1 Satellite centromeric 1 253 -1345 279 93 0 0 chr12 37505798 37505841 -106280614 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 2483 276 54 45 chr12 37505841 37507125 -106279330 + SST1 Satellite centromeric 253 1597 -1 225 0 0 0 chr12 37507129 37507154 -106279301 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 210 16 0 chr12 37507154 37507216 -106279239 + CT-rich Low_complexity Low_complexity 1 63 0 577 257 58 18 chr12 37507945 37508171 -106278284 + SST1 Satellite centromeric 1 235 -1328 2134 265 60 52 chr12 37508183 37509315 -106277140 + SST1 Satellite centromeric 416 1556 -7 249 33 0 0 chr12 37509330 37509360 -106277095 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 37509360 37509416 -106277039 + CT-rich Low_complexity Low_complexity 1 57 0 262 78 20 20 chr12 37509420 37509471 -106276984 + (TG)n Simple_repeat Simple_repeat 2 52 0 536 272 75 24 chr12 37510176 37510389 -106276066 + SST1 Satellite centromeric 9 232 -1331 1470 289 58 50 chr12 37510400 37511220 -106275235 + SST1 Satellite centromeric 413 1239 -324 7524 157 29 19 chr12 37511784 37513177 -106273278 + SST1 Satellite centromeric 1 1406 -157 813 154 0 13 chr12 37513250 37513399 -106273056 - AluSg/x SINE Alu -9 303 157 1261 191 127 11 chr12 37513405 37513688 -106272767 + SST1 Satellite centromeric 1238 1553 -10 803 164 7 0 chr12 37514755 37514895 -106271560 + AluYb8 SINE Alu 1 141 -177 2071 122 10 3 chr12 37514898 37515209 -106271246 + AluSq SINE Alu 1 313 0 1899 149 0 0 chr12 37515337 37515625 -106270830 + AluSx SINE Alu 11 298 -14 428 204 0 39 chr12 37515966 37516069 -106270386 + MER33 DNA MER1_type 37 135 -189 869 143 13 26 chr12 37516069 37516203 -106270252 + AluJo SINE Alu 1 134 -178 1801 142 0 52 chr12 37516203 37516512 -106269943 + AluJb SINE Alu 1 293 -19 869 143 13 26 chr12 37516512 37516531 -106269924 + AluJo SINE Alu 134 152 -160 1247 164 9 0 chr12 37516532 37516751 -106269704 + AluSg/x SINE Alu 79 299 -13 369 0 0 0 chr12 37516752 37516793 -106269662 + (CA)n Simple_repeat Simple_repeat 2 42 0 1435 186 59 10 chr12 37516881 37517188 -106269267 + L1MB8 LINE L1 5848 6169 -9 550 128 21 0 chr12 37517272 37517366 -106269089 - AluSx SINE Alu 0 312 217 822 162 7 7 chr12 37517366 37517508 -106268947 - AluSx SINE Alu -170 142 1 1138 208 4 38 chr12 37517635 37517899 -106268556 + AluJb SINE Alu 1 255 -57 582 144 0 29 chr12 37519847 37519981 -106266474 + AluSg/x SINE Alu 206 312 0 1715 132 32 7 chr12 37520086 37520367 -106266088 + AluSx SINE Alu 5 292 -20 657 170 38 0 chr12 37520396 37520502 -106265953 - AluSq/x SINE Alu -201 111 2 258 187 98 49 chr12 37520631 37520754 -106265701 - HAL1b LINE L1 -5 1343 1215 1624 179 10 17 chr12 37520810 37521086 -106265369 + AluSx SINE Alu 4 112 -200 198 0 0 0 chr12 37521086 37521108 -106265347 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1624 179 10 17 chr12 37521108 37521308 -106265147 + AluSx SINE Alu 112 312 0 1384 194 61 4 chr12 37521308 37521586 -106264869 + MER44D DNA MER2_type 439 604 -1 239 244 39 0 chr12 37521866 37521944 -106264511 + (TA)n Simple_repeat Simple_repeat 2 82 0 1752 165 3 0 chr12 37521958 37522255 -106264200 - AluSx SINE Alu -14 298 1 1625 179 3 0 chr12 37522292 37522577 -106263878 + AluJb SINE Alu 5 290 -22 236 289 24 0 chr12 37522618 37522701 -106263754 - L1ME LINE L1 -545 5576 5492 2657 196 101 4 chr12 37522703 37523229 -106263226 + MER77 LTR ERV1 1 577 -28 2265 87 0 7 chr12 37523476 37523785 -106262670 - AluY SINE Alu -4 307 1 2070 123 0 0 chr12 37523933 37524233 -106262222 - AluSg SINE Alu -1 309 10 2399 141 21 14 chr12 37524313 37524731 -106261724 - L1PA15 LINE L1 0 6165 5745 2056 231 12 19 chr12 37524741 37525177 -106261278 + L1P LINE L1 4730 5163 -983 1737 119 19 0 chr12 37525177 37525438 -106261017 + AluSg SINE Alu 42 307 -3 2056 231 12 19 chr12 37525438 37525564 -106260891 + L1P LINE L1 5163 5288 -858 267 224 0 40 chr12 37525568 37525644 -106260811 + MER89 LTR ERV1 487 559 0 1740 155 7 7 chr12 37525699 37525983 -106260472 + AluSg SINE Alu 3 286 -24 1988 130 0 3 chr12 37525991 37526290 -106260165 + AluSg SINE Alu 1 298 -12 1196 106 5 88 chr12 37526292 37526535 -106259920 + AluSp SINE Alu 98 313 0 1679 142 64 0 chr12 37526873 37527154 -106259301 + AluSq SINE Alu 1 299 -14 1042 201 20 111 chr12 37527154 37527372 -106259083 - L1MC4a LINE L1 -916 6892 6752 712 157 0 57 chr12 37527372 37527512 -106258943 + FLAM_C SINE Alu 1 132 -1 1042 201 20 111 chr12 37527512 37527654 -106258801 - L1MC4a LINE L1 -1056 6752 6599 1889 157 0 0 chr12 37527671 37527970 -106258485 - AluSx SINE Alu -13 299 1 1722 185 145 46 chr12 37527970 37528072 -106258383 + MER106B DNA MER1_type 2 92 -967 2052 130 0 0 chr12 37528072 37528372 -106258083 - AluSx SINE Alu -12 300 1 1722 185 145 46 chr12 37528372 37528469 -106257986 + MER106B DNA MER1_type 92 178 -881 1768 158 7 7 chr12 37528469 37528773 -106257682 + AluSx SINE Alu 1 304 -8 1722 185 145 46 chr12 37528773 37529054 -106257401 + MER106B DNA MER1_type 178 531 -528 1754 151 3 3 chr12 37529054 37529376 -106257079 - AluSx SINE Alu 0 322 1 1834 154 3 0 chr12 37529601 37529906 -106256549 + AluSx SINE Alu 2 307 -5 2168 113 3 0 chr12 37529959 37530269 -106256186 + AluSx SINE Alu 1 311 -1 287 105 0 0 chr12 37530652 37530690 -106255765 + Alu SINE Alu 1 38 -263 468 290 132 48 chr12 37530742 37531097 -106255358 + L2 LINE L2 2847 3231 -82 1260 87 17 0 chr12 37531099 37531271 -106255184 - AluSg/x SINE Alu -22 288 114 454 150 23 120 chr12 37531911 37532044 -106254411 + MER61E LTR ERV1 33 152 -417 * 672 168 48 8 chr12 37532028 37532141 -106254314 + LTR25 LTR ERV1 239 356 -438 845 155 216 28 chr12 37532141 37532465 -106253990 - LTR46 LTR ERV1 0 460 1 1832 162 20 45 chr12 37532465 37532861 -106253594 + LTR25 LTR ERV1 362 747 -47 3808 181 78 32 chr12 37533162 37533252 -106253203 + MER21B LTR ERV1 1 85 -778 2175 89 16 32 chr12 37533252 37533567 -106252888 - AluSx SINE Alu 0 312 3 3808 181 78 32 chr12 37533567 37534300 -106252155 + MER21B LTR ERV1 85 862 -1 1181 212 26 29 chr12 37534356 37534663 -106251792 - AluJo SINE Alu -1 311 6 1743 143 7 7 chr12 37534679 37534980 -106251475 - AluSx SINE Alu 0 334 34 248 211 0 0 chr12 37534980 37535032 -106251423 - AluJb SINE Alu -57 245 194 516 198 0 0 chr12 37535217 37535313 -106251142 - AluSx SINE Alu 0 312 217 836 169 0 0 chr12 37535313 37535455 -106251000 - AluSx SINE Alu -171 142 1 1507 185 7 7 chr12 37535580 37535872 -106250583 + AluJb SINE Alu 1 292 -20 324 0 0 0 chr12 37536211 37536247 -106250208 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr12 37536727 37536748 -106249707 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 378 0 0 0 chr12 37537832 37537874 -106248581 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1758 144 7 0 chr12 37537875 37538153 -106248302 - AluSx SINE Alu -32 280 1 1631 179 11 0 chr12 37538243 37538522 -106247933 - AluSx SINE Alu -28 284 3 290 271 66 8 chr12 37538657 37538779 -106247676 - HAL1b LINE L1 -5 1343 1215 1663 173 3 22 chr12 37538832 37539150 -106247305 + AluSx SINE Alu 1 312 0 429 66 66 0 chr12 37539157 37539233 -106247222 + GA-rich Low_complexity Low_complexity 1 81 0 1633 184 13 22 chr12 37539234 37539549 -106246906 + MER44D DNA MER2_type 421 604 -1 1854 144 7 0 chr12 37539916 37540214 -106246241 - AluSx SINE Alu -12 300 1 1492 207 7 0 chr12 37540247 37540546 -106245909 + AluJb SINE Alu 1 301 -11 2427 211 113 4 chr12 37540658 37541178 -106245277 + MER77 LTR ERV1 1 577 -28 1822 149 0 0 chr12 37541555 37541837 -106244618 - AluSg SINE Alu 0 310 29 769 147 0 37 chr12 37541887 37542061 -106244394 + AluSp/q SINE Alu 172 313 0 1949 104 3 45 chr12 37542200 37542508 -106243947 - AluSx SINE Alu -17 295 1 1028 115 0 0 chr12 37542508 37542647 -106243808 - AluSq/x SINE Alu -172 141 3 532 236 42 21 chr12 37542668 37542812 -106243643 + L2 LINE L2 3167 3313 0 882 212 14 37 chr12 37542869 37543086 -106243369 - AluSx SINE Alu -100 212 1 23 0 0 0 chr12 37543340 37543363 -106243092 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 37543542 37543582 -106242873 + AT_rich Low_complexity Low_complexity 1 40 0 1219 222 60 4 chr12 37543582 37543887 -106242568 - L1MC/D LINE L1 -718 5626 5370 936 172 0 0 chr12 37543892 37544049 -106242406 + FRAM SINE Alu 1 157 -19 1934 128 0 0 chr12 37544052 37544372 -106242083 + AluY SINE Alu 1 320 0 3249 181 57 10 chr12 37544379 37545052 -106241403 - L1MC2 LINE L1 -25 6319 5616 235 180 197 0 chr12 37545313 37545374 -106241081 - AluSq SINE Alu -8 295 223 1242 137 6 0 chr12 37545375 37545557 -106240898 - AluSq SINE Alu -130 183 1 1433 133 4 29 chr12 37545916 37546156 -106240299 - AluSg/x SINE Alu -14 298 65 264 226 54 21 chr12 37546203 37546296 -106240159 - L1ME3A LINE L1 -223 5947 5852 1672 155 16 39 chr12 37546336 37546477 -106239978 + AluSx SINE Alu 1 144 -168 1708 161 7 0 chr12 37546477 37546763 -106239692 + AluY SINE Alu 8 295 -16 1672 155 16 39 chr12 37546763 37546930 -106239525 + AluSx SINE Alu 144 302 -10 1752 157 0 0 chr12 37546934 37547220 -106239235 + AluSx SINE Alu 3 288 -24 59 0 0 0 chr12 37547220 37547279 -106239176 + AT_rich Low_complexity Low_complexity 1 59 0 462 319 63 12 chr12 37547297 37547629 -106238826 - L1ME3A LINE L1 -401 5769 5421 2006 119 7 3 chr12 37547775 37548068 -106238387 - AluSq SINE Alu -15 298 5 1602 159 10 10 chr12 37548911 37549200 -106237255 - AluJb SINE Alu -23 289 1 589 152 0 11 chr12 37549313 37549405 -106237050 + AluSp SINE Alu 122 212 -101 1588 198 23 8 chr12 37549910 37550250 -106236205 + MER93a LTR ERV1 4 394 -8 754 187 0 43 chr12 37550252 37550391 -106236064 - FLAM_A SINE Alu 0 133 1 612 89 0 11 chr12 37550629 37550719 -106235736 + L1PA16 LINE L1 6069 6157 -9 317 280 24 8 chr12 37550815 37550940 -106235515 - L1M4 LINE L1 -2281 3865 3739 24 32 0 0 chr12 37550961 37550992 -106235463 + AT_rich Low_complexity Low_complexity 1 31 0 457 335 56 19 chr12 37551375 37551590 -106234865 + MIR SINE MIR 28 250 -12 345 297 50 0 chr12 37552139 37552240 -106234215 + L2 LINE L2 3193 3298 -15 1805 157 0 7 chr12 37552336 37552629 -106233826 - AluSx SINE Alu -15 297 7 414 230 132 113 chr12 37552735 37552939 -106233516 + MIR SINE MIR 44 251 -11 1648 125 14 7 chr12 37553262 37553543 -106232912 + L1MA4 LINE L1 6018 6300 0 1120 269 90 34 chr12 37553725 37554284 -106232171 - MER115 DNA AcHobo -50 643 15 419 281 15 15 chr12 37554631 37554766 -106231689 + LTR16C LTR ERVL 340 474 -17 2878 160 0 54 chr12 37554769 37554907 -106231548 - Tigger1 DNA MER2_type 0 2418 2274 1858 121 39 0 chr12 37554907 37555187 -106231268 + AluSx SINE Alu 2 292 -20 2878 160 0 54 chr12 37555187 37555586 -106230869 - Tigger1 DNA MER2_type -144 2274 1910 846 255 25 10 chr12 37555780 37555976 -106230479 - MER115 DNA AcHobo -50 643 445 1944 134 7 0 chr12 37556033 37556339 -106230116 + AluSp SINE Alu 1 308 -5 2364 139 0 0 chr12 37556339 37556691 -106229764 - Tigger1 DNA MER2_type -645 1773 1422 308 250 107 0 chr12 37559571 37559655 -106226800 + L1ME LINE L1 5737 5829 -333 216 260 62 52 chr12 37559954 37560050 -106226405 - MIR SINE MIR -58 150 70 285 286 174 0 chr12 37560246 37560344 -106226111 + L2 LINE L2 3122 3236 -36 372 283 145 0 chr12 37560355 37560500 -106225955 - L2 LINE L2 -9 3304 3139 629 304 39 8 chr12 37560584 37560844 -106225611 - L2 LINE L2 -1742 1572 1305 395 268 16 16 chr12 37560883 37561006 -106225449 + MIR SINE MIR 93 215 -47 1024 310 141 2 chr12 37561022 37561647 -106224808 - L2 LINE L2 -1993 1321 610 2140 188 25 109 chr12 37561709 37562321 -106224134 - MER7C DNA MER2_type -42 560 1 381 278 164 27 chr12 37562324 37562587 -106223868 - L2 LINE L2 -2793 521 223 538 115 0 0 chr12 37563019 37563097 -106223358 - AluSc SINE Alu -11 298 221 459 289 26 13 chr12 37563555 37563707 -106222748 - L2 LINE L2 -27 3286 3133 769 193 7 0 chr12 37563707 37563842 -106222613 + FLAM_C SINE Alu 5 140 -3 268 294 124 79 chr12 37564011 37564188 -106222267 + MER5A DNA MER1_type 3 187 -2 340 273 27 18 chr12 37564264 37564374 -106222081 + L2 LINE L2 2927 3037 -235 291 246 31 19 chr12 37564740 37564859 -106221596 + MIR SINE MIR 33 152 -65 25 31 0 0 chr12 37565956 37565988 -106220467 + AT_rich Low_complexity Low_complexity 1 32 0 221 197 33 0 chr12 37666138 37666199 -106120256 + GA-rich Low_complexity Low_complexity 1 63 0 282 87 0 0 chr12 37666199 37666245 -106120210 + (CA)n Simple_repeat Simple_repeat 2 47 0 1667 233 73 60 chr12 37666252 37667137 -106119318 - SST1 Satellite centromeric -1 1562 666 2815 185 142 55 chr12 37667580 37668789 -106117666 + MER52C LTR ERV1 1 1278 0 454 119 0 30 chr12 37668789 37668856 -106117599 + Alu SINE Alu 235 299 -13 22 35 0 0 chr12 37669999 37670028 -106116427 + AT_rich Low_complexity Low_complexity 1 29 0 2295 179 27 74 chr12 37670102 37670326 -106116129 - L1MB3 LINE L1 -351 5832 5599 387 0 0 0 chr12 37670326 37670369 -106116086 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2295 179 27 74 chr12 37670369 37670388 -106116067 - L1MB3 LINE L1 -584 5599 5581 1644 142 0 0 chr12 37670388 37670621 -106115834 - AluSg SINE Alu -77 233 1 2295 179 27 74 chr12 37670621 37670900 -106115555 - L1MB3 LINE L1 -602 5581 5334 568 301 55 12 chr12 37671773 37672029 -106114426 + SST1 Satellite centromeric 1 267 -1296 1149 128 4 0 chr12 37672039 37672464 -106113991 - ALR/Alpha Satellite centromeric 0 426 1 1961 143 0 3 chr12 37672647 37672934 -106113521 + AluSq SINE Alu 3 288 -25 2182 126 0 0 chr12 37673182 37673484 -106112971 + AluSq SINE Alu 1 302 -11 1435 188 7 41 chr12 37674449 37674741 -106111714 + AluJo SINE Alu 1 282 -30 945 237 4 13 chr12 37674889 37675121 -106111334 + L1MB1 LINE L1 5936 6165 -3 1039 309 74 28 chr12 37675121 37675728 -106110727 - L2 LINE L2 -94 3219 2574 1070 251 29 14 chr12 37677258 37677537 -106108918 + MLT1A1 LTR MaLR 26 308 -57 367 294 17 8 chr12 37677722 37677840 -106108615 + LTR16C LTR ERVL 359 477 -14 5222 153 1 34 chr12 37677840 37677978 -106108477 - Tigger1 DNA MER2_type 0 2418 2277 1828 129 65 0 chr12 37677978 37678257 -106108198 + AluSx SINE Alu 2 298 -14 5222 153 1 34 chr12 37678257 37678791 -106107664 - Tigger1 DNA MER2_type -141 2277 1781 2119 130 3 0 chr12 37678791 37679090 -106107365 + AluSp SINE Alu 1 300 -13 5222 153 1 34 chr12 37679090 37679320 -106107135 - Tigger1 DNA MER2_type -637 1781 1545 584 134 244 25 chr12 37679308 37679427 -106107028 - Tigger1 DNA MER2_type -1210 1208 1064 * 1560 187 3 36 chr12 37679427 37679732 -106106723 - AluJb SINE Alu -17 295 1 7387 121 2 10 chr12 37680289 37681356 -106105099 - THE1A-int LTR MaLR -522 1058 1 2523 111 3 43 chr12 37681356 37681726 -106104729 - THE1A LTR MaLR 0 355 1 598 248 74 55 chr12 37681726 37682071 -106104384 + L1M2 LINE L1 5492 5845 -374 1119 188 65 115 chr12 37682418 37682802 -106103653 + MLT1A1 LTR MaLR 1 365 0 1122 214 4 24 chr12 37684056 37684304 -106102151 + AluJo SINE Alu 16 258 -54 900 273 95 47 chr12 37684305 37684989 -106101466 + SST1 Satellite centromeric 847 1563 0 242 138 17 0 chr12 37685009 37685067 -106101388 + CT-rich Low_complexity Low_complexity 2 60 0 207 167 0 0 chr12 37685066 37685108 -106101347 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 428 259 62 12 chr12 37685622 37685784 -106100671 + SST1 Satellite centromeric 256 425 -1138 1820 157 0 0 chr12 37685905 37686186 -106100269 - AluY SINE Alu -30 281 1 991 178 0 0 chr12 37686189 37686346 -106100109 - FRAM SINE Alu -19 157 1 1280 209 27 7 chr12 37686351 37686650 -106099805 + L1MC/D LINE L1 5370 5629 -715 39 38 0 0 chr12 37686650 37686703 -106099752 + AT_rich Low_complexity Low_complexity 1 53 0 895 220 9 37 chr12 37687171 37687389 -106099066 + AluSx SINE Alu 1 212 -100 242 182 0 0 chr12 37687398 37687442 -106099013 + Charlie1 DNA MER1_type 2718 2761 0 576 195 24 24 chr12 37687450 37687573 -106098882 - L2 LINE L2 -4 3309 3187 1222 136 0 31 chr12 37687611 37687802 -106098653 + AluSx SINE Alu 3 187 -125 530 82 14 0 chr12 37687810 37687883 -106098572 + AluSq/x SINE Alu 60 133 -180 1280 136 3 1 chr12 37688002 37691951 -106094504 - ALR/Alpha Satellite centromeric 0 3957 1 271 398 0 0 chr12 37691951 37692054 -106094401 - MIR SINE MIR -132 130 28 21 71 0 0 chr12 37692426 37692468 -106093987 + AT_rich Low_complexity Low_complexity 1 42 0 640 89 0 11 chr12 37692712 37692802 -106093653 - L1PA16 LINE L1 -9 6157 6069 1035 231 52 4 chr12 37693221 37693328 -106093127 - AluJo SINE Alu -72 240 140 243 0 0 0 chr12 37693328 37693355 -106093100 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1035 231 52 4 chr12 37693355 37693476 -106092979 - AluJo SINE Alu -172 140 1 1386 187 49 113 chr12 37694523 37694608 -106091847 + MLT1A1 LTR MaLR 1 90 -275 2256 112 0 0 chr12 37694608 37694894 -106091561 + AluSg SINE Alu 1 286 -24 1386 187 49 113 chr12 37694894 37695198 -106091257 + MLT1A1 LTR MaLR 90 365 0 21 0 0 0 chr12 37697459 37697480 -106088975 + AT_rich Low_complexity Low_complexity 1 21 0 8020 29 0 0 chr12 37697698 37698976 -106087479 - L1PA2 LINE L1 -4 6151 4875 4905 34 0 0 chr12 37698976 37699557 -106086898 + L1PA2 LINE L1 4284 4864 -1282 22 0 0 0 chr12 37700219 37700241 -106086214 + AT_rich Low_complexity Low_complexity 1 22 0 1520 197 0 33 chr12 37700526 37700826 -106085629 - AluJo SINE Alu -22 290 1 24 85 0 0 chr12 37700976 37701035 -106085420 + AT_rich Low_complexity Low_complexity 1 59 0 302 294 110 9 chr12 37701365 37701474 -106084981 - L2 LINE L2 -16 3297 3178 2032 167 11 11 chr12 37701910 37702257 -106084198 - MER7A DNA MER2_type -1 345 1 7025 82 45 26 chr12 37703258 37704075 -106082380 - L1PA8 LINE L1 -3 6169 5340 2045 119 7 17 chr12 37704075 37704370 -106082085 - AluSq SINE Alu -21 292 1 7025 82 45 26 chr12 37704370 37704747 -106081708 - L1PA8 LINE L1 -832 5340 4972 1264 239 27 10 chr12 37704848 37705160 -106081295 - MER93a LTR ERV1 -36 366 4 201 74 0 0 chr12 37705291 37705318 -106081137 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 542 122 0 0 chr12 37705670 37705744 -106080711 - AluSp SINE Alu -101 212 139 1739 176 0 7 chr12 37705874 37706164 -106080291 + AluJb SINE Alu 1 288 -24 1984 132 7 20 chr12 37707015 37707319 -106079136 + AluSq SINE Alu 5 304 -9 348 323 66 38 chr12 37707435 37707782 -106078673 + L1ME3A LINE L1 5413 5769 -409 53 17 0 0 chr12 37707797 37707857 -106078598 + AT_rich Low_complexity Low_complexity 1 60 0 1843 150 0 3 chr12 37707857 37708144 -106078311 - AluSx SINE Alu -24 288 3 1826 156 9 38 chr12 37708146 37708319 -106078136 - AluSx SINE Alu -6 306 145 1760 160 11 0 chr12 37708319 37708601 -106077854 - AluY SINE Alu -19 292 8 1826 156 9 38 chr12 37708601 37708742 -106077713 - AluSx SINE Alu -167 145 1 239 247 54 21 chr12 37708782 37708875 -106077580 + L1ME3A LINE L1 5852 5947 -223 1486 161 4 28 chr12 37708922 37709176 -106077279 + AluSg/x SINE Alu 65 312 0 1433 136 207 0 chr12 37709521 37709763 -106076692 + AluSq SINE Alu 1 292 -21 223 284 11 11 chr12 37709923 37710035 -106076420 + (TA)n Simple_repeat Simple_repeat 1 112 0 2348 198 15 11 chr12 37710036 37710556 -106075899 + L1MC2 LINE L1 5616 6137 -207 1714 144 36 18 chr12 37710658 37710936 -106075519 - AluSg SINE Alu -27 283 1 721 272 62 6 chr12 37710962 37711285 -106075170 - L1MA9 LINE L1 -38 6274 5934 1679 127 4 28 chr12 37711704 37711957 -106074498 - AluSg/x SINE Alu -1 311 65 295 304 118 31 chr12 37712003 37712140 -106074315 - L1ME3 LINE L1 -214 5948 5824 2095 121 3 38 chr12 37712140 37712279 -106074176 + AluSx SINE Alu 4 146 -166 1840 151 11 0 chr12 37712279 37712563 -106073892 + AluY SINE Alu 9 295 -16 2095 121 3 38 chr12 37712563 37712737 -106073718 + AluSx SINE Alu 146 306 -6 1899 157 3 3 chr12 37712737 37713042 -106073413 + AluSx SINE Alu 1 305 -7 295 304 118 31 chr12 37713042 37713387 -106073068 - L1ME3 LINE L1 -337 5825 5423 2056 151 6 3 chr12 37713520 37713831 -106072624 - AluSq SINE Alu -1 312 1 1065 159 0 0 chr12 37713965 37714122 -106072333 + AluSg/x SINE Alu 140 296 -14 1330 98 6 11 chr12 37714280 37714463 -106071992 + AluYa5 SINE Alu 113 294 -17 1095 172 15 37 chr12 37714478 37714731 -106071724 + L1M2 LINE L1 5546 5794 -497 321 26 0 0 chr12 37714731 37714769 -106071686 + (CA)n Simple_repeat Simple_repeat 1 38 0 1095 172 15 37 chr12 37714769 37714783 -106071672 + L1M2 LINE L1 5794 5807 -484 2095 109 4 0 chr12 37714787 37715090 -106071365 - AluSp SINE Alu 0 310 7 2059 144 0 0 chr12 37715109 37715408 -106071047 - AluSq SINE Alu -14 299 1 2108 112 0 0 chr12 37715972 37716257 -106070198 + AluY SINE Alu 1 285 -26 31 44 0 0 chr12 37716257 37716302 -106070153 + AT_rich Low_complexity Low_complexity 1 45 0 2854 159 11 61 chr12 37716306 37716559 -106069896 - MER57B-int LTR ERV1 -7004 533 269 2153 131 0 0 chr12 37716559 37716864 -106069591 + AluSx SINE Alu 6 310 -2 2854 159 11 61 chr12 37716864 37717171 -106069284 - MER57B-int LTR ERV1 -7268 269 1 2611 149 12 2 chr12 37717171 37717601 -106068854 - MER57B LTR ERV1 0 434 1 1011 102 0 19 chr12 37717601 37717758 -106068697 + MER4E LTR ERV1 613 766 0 1015 251 14 11 chr12 37717758 37718045 -106068410 + L1ME2 LINE L1 5802 6089 -75 265 289 114 30 chr12 37718498 37718664 -106067791 - LTR33 LTR ERVL -35 486 307 704 326 122 19 chr12 37719443 37719940 -106066515 - L2 LINE L2 -206 3107 2544 228 222 103 56 chr12 37720103 37720229 -106066226 + MIR SINE MIR 77 208 -54 25 31 0 0 chr12 37721525 37721557 -106064898 + AT_rich Low_complexity Low_complexity 1 32 0 1424 231 65 24 chr12 37721557 37722349 -106064106 + L1ME1 LINE L1 5316 6160 -6 250 250 38 0 chr12 37722328 37722408 -106064047 + L1ME1 LINE L1 6077 6159 -7 * 714 304 52 46 chr12 37722433 37722933 -106063522 + L1ME3A LINE L1 3345 3847 -2299 361 236 60 76 chr12 37722945 37723025 -106063430 + L1MC4 LINE L1 7770 7850 -192 1814 166 76 17 chr12 37723025 37723369 -106063086 - THE1B LTR MaLR 0 364 1 361 236 60 76 chr12 37723369 37723538 -106062917 + L1MC4 LINE L1 7850 8015 -27 304 319 125 41 chr12 37723575 37723895 -106062560 + L1ME3A LINE L1 3832 4178 -1968 648 275 94 13 chr12 37724000 37724476 -106061979 + L1ME3A LINE L1 4303 4817 -1329 1233 294 102 19 chr12 37724547 37725606 -106060849 + L1ME3A LINE L1 5003 6155 -15 329 338 66 81 chr12 37725739 37726147 -106060308 + L1MC4 LINE L1 7347 7748 -294 22 0 0 0 chr12 37726590 37726612 -106059843 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 37726675 37726706 -106059749 + AT_rich Low_complexity Low_complexity 1 31 0 324 272 91 56 chr12 37727042 37727274 -106059181 - L1 LINE L1 -3692 2454 2215 303 328 71 35 chr12 37727427 37727738 -106058717 - LTR33 LTR ERVL -169 352 31 1639 328 18 8 chr12 37728621 37729240 -106057215 - ERVL LTR ERVL -1084 4680 4056 262 337 17 17 chr12 37729316 37729494 -106056961 - ERVL LTR ERVL -2125 3529 3352 282 331 87 17 chr12 37729531 37729703 -106056752 - ERVL LTR ERVL -2383 3271 3088 282 333 17 8 chr12 37729773 37729890 -106056565 - ERVL LTR ERVL -2726 3038 2921 798 127 15 37 chr12 37729947 37730081 -106056374 + FLAM_C SINE Alu 1 131 -2 549 321 38 19 chr12 37730119 37730531 -106055924 - LTR33 LTR ERVL -57 464 14 21 0 0 0 chr12 37732703 37732724 -106053731 + AT_rich Low_complexity Low_complexity 1 21 0 504 351 98 13 chr12 37733001 37733380 -106053075 + L3 LINE CR1 1150 1560 -17 1168 160 7 1 chr12 37733929 37738328 -106048127 + ALR/Alpha Satellite centromeric 1 4425 -1 1135 151 4 1 chr12 37738435 37740268 -106046187 + ALR/Alpha Satellite centromeric 1 1838 -40 1220 138 3 1 chr12 37740375 37749006 -106037449 - ALR/Alpha Satellite centromeric 0 8644 1 765 132 0 37 chr12 37749192 37749359 -106037096 - AluSp/q SINE Alu 0 313 172 1925 142 0 0 chr12 37749409 37749690 -106036765 + AluSg SINE Alu 29 309 -1 2070 222 118 6 chr12 37750064 37750581 -106035874 - MER77 LTR ERV1 -30 575 1 1856 180 3 0 chr12 37750691 37750991 -106035464 - AluJb SINE Alu -11 301 1 273 200 57 19 chr12 37750991 37751024 -106035431 + (TA)n Simple_repeat Simple_repeat 1 31 -78 1922 154 7 0 chr12 37751024 37751323 -106035132 + AluSx SINE Alu 1 301 -11 273 200 57 19 chr12 37751323 37751394 -106035061 + (TA)n Simple_repeat Simple_repeat 31 109 0 1476 202 13 3 chr12 37751694 37751996 -106034459 - MER44D DNA MER2_type -1 604 428 327 88 59 15 chr12 37751996 37752064 -106034391 + CT-rich Low_complexity Low_complexity 1 71 0 1969 154 3 22 chr12 37752071 37752389 -106034066 - AluSx SINE Alu 0 312 1 232 271 57 8 chr12 37752442 37752564 -106033891 + HAL1b LINE L1 1215 1342 -6 1819 161 11 0 chr12 37752699 37752978 -106033477 + AluSx SINE Alu 3 284 -28 1850 160 10 0 chr12 37753067 37753361 -106033094 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr12 37754452 37754473 -106031982 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 189 74 0 0 chr12 37755205 37755232 -106031223 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1620 182 14 14 chr12 37755315 37755606 -106030849 - AluJb SINE Alu -17 295 5 559 157 0 3 chr12 37755736 37755971 -106030484 + AluSx SINE Alu 1 306 -3 1424 183 40 12 chr12 37756055 37756377 -106030078 - L1MB8 LINE L1 0 6178 5848 713 217 62 76 chr12 37756821 37757097 -106029358 - PABL_B LTR ERV1 -42 625 354 1940 143 16 0 chr12 37757544 37757851 -106028604 - AluSq SINE Alu -1 312 1 1948 132 7 0 chr12 37757857 37758146 -106028309 - AluSx SINE Alu -21 291 1 1167 130 0 11 chr12 37758154 37758338 -106028117 - AluSq SINE Alu -10 303 122 570 96 11 0 chr12 37758565 37758659 -106027796 + AluY SINE Alu 217 311 0 21 0 0 0 chr12 37758751 37758772 -106027683 + AT_rich Low_complexity Low_complexity 1 21 0 1958 144 3 13 chr12 37758944 37759249 -106027206 + AluSx SINE Alu 1 302 -10 1980 169 7 0 chr12 37759537 37759845 -106026610 + AluSx SINE Alu 1 310 -2 1587 177 3 34 chr12 37760668 37760962 -106025493 - AluJb SINE Alu -7 305 21 648 218 132 10 chr12 37761062 37761259 -106025196 - L1M4 LINE L1 -829 5317 5097 1333 232 25 9 chr12 37761734 37762075 -106024380 + MER93a LTR ERV1 4 395 -7 717 190 0 44 chr12 37762076 37762213 -106024242 - FLAM_A SINE Alu -2 131 1 577 132 0 11 chr12 37762451 37762542 -106023913 + L1PA16 LINE L1 6069 6158 -8 306 293 32 19 chr12 37762637 37762794 -106023661 - L1M4 LINE L1 -2281 3865 3707 357 322 76 19 chr12 37763198 37763409 -106023046 + MIR SINE MIR 28 250 -12 275 320 50 0 chr12 37763962 37764062 -106022393 + L2 LINE L2 3194 3298 -15 1977 141 0 7 chr12 37764156 37764463 -106021992 - AluSx SINE Alu 0 305 1 278 236 66 158 chr12 37764563 37764804 -106021651 + MIR SINE MIR 44 262 0 1501 147 11 18 chr12 37765089 37765374 -106021081 + L1MA4 LINE L1 6018 6300 0 1075 302 101 22 chr12 37765780 37766327 -106020128 - MER115 DNA AcHobo -50 643 15 1720 189 0 29 chr12 37766645 37766951 -106019504 + AluJb SINE Alu 1 297 -15 2045 124 35 0 chr12 37766960 37767250 -106019205 + AluSc SINE Alu 1 300 -9 1511 152 45 8 chr12 37767250 37767514 -106018941 - MER54A LTR ERVL -627 274 1 1555 136 140 0 chr12 37767692 37767956 -106018499 - AluSx SINE Alu -1 301 1 2300 110 3 0 chr12 37768557 37768857 -106017598 - AluSp SINE Alu -12 301 1 823 196 7 0 chr12 37768871 37769019 -106017436 - AluSg/x SINE Alu -19 293 145 876 119 113 12 chr12 37769122 37769282 -106017173 + AluSg/x SINE Alu 127 302 -8 2209 125 3 0 chr12 37769290 37769601 -106016854 + AluSq SINE Alu 1 312 -1 952 170 0 53 chr12 37769601 37769783 -106016672 + AluSg/x SINE Alu 127 298 -14 704 188 0 0 chr12 37769992 37770109 -106016346 + FLAM_C SINE Alu 1 117 -16 619 52 10 10 chr12 37770112 37770209 -106016246 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 442 157 0 0 chr12 37770233 37770303 -106016152 + AluJ/FRAM SINE Alu 223 292 -20 1366 193 4 0 chr12 37770753 37770997 -106015458 + AluJb SINE Alu 1 245 -67 1883 137 0 7 chr12 37770997 37771308 -106015147 + AluSx SINE Alu 34 312 0 1421 192 19 23 chr12 37771317 37771624 -106014831 + AluJo SINE Alu 6 311 -1 3940 163 81 34 chr12 37771678 37772414 -106014041 - MER21B LTR ERV1 0 863 82 2200 103 16 32 chr12 37772414 37772725 -106013730 + AluSx SINE Alu 3 308 -4 3940 163 81 34 chr12 37772725 37772812 -106013643 - MER21B LTR ERV1 -781 82 1 1812 156 20 48 chr12 37773120 37773517 -106012938 - LTR25 LTR ERV1 -47 747 362 761 168 81 32 chr12 37773517 37773846 -106012609 + LTR46 LTR ERV1 1 460 0 518 181 57 9 chr12 37773848 37773953 -106012502 - LTR25 LTR ERV1 -455 339 230 401 179 15 119 chr12 37773928 37774062 -106012393 - MER61E LTR ERV1 -417 152 33 * 1438 77 17 0 chr12 37774724 37774905 -106011550 + AluSg/x SINE Alu 112 295 -15 386 299 130 42 chr12 37774908 37775262 -106011193 - L2 LINE L2 -82 3231 2847 281 132 0 0 chr12 37775314 37775352 -106011103 - Alu SINE Alu -264 38 1 2323 107 10 0 chr12 37775727 37776036 -106010419 - AluSx SINE Alu 0 312 1 1831 170 3 0 chr12 37776086 37776386 -106010069 - AluSx SINE Alu -7 305 5 1285 138 4 2 chr12 37776507 37789116 -105997339 - ALR/Alpha Satellite centromeric 0 12635 1 548 130 0 0 chr12 37789217 37789294 -105997161 - AluS SINE Alu -232 78 2 1907 144 7 7 chr12 37789303 37789587 -105996868 - AluSg SINE Alu -24 286 3 250 237 0 40 chr12 37789642 37789718 -105996737 - MER89 LTR ERV1 0 559 487 2055 239 11 12 chr12 37789722 37789845 -105996610 - L1P LINE L1 -858 5288 5166 1781 124 19 8 chr12 37789845 37790110 -105996345 - AluSg SINE Alu -3 307 40 2055 239 11 12 chr12 37790110 37790546 -105995909 - L1P LINE L1 -980 5166 4730 2324 152 19 17 chr12 37790556 37790976 -105995479 + L1PA15 LINE L1 5745 6165 0 2298 120 3 0 chr12 37791042 37791350 -105995105 + AluSg SINE Alu 1 309 -1 2079 133 0 3 chr12 37791482 37791782 -105994673 + AluY SINE Alu 1 299 -12 2505 202 105 4 chr12 37792027 37792551 -105993904 - MER77 LTR ERV1 -28 577 1 264 277 24 0 chr12 37792553 37792636 -105993819 + L1ME LINE L1 5492 5576 -545 1702 191 10 0 chr12 37792676 37792964 -105993491 - AluJb SINE Alu -21 291 1 262 218 39 0 chr12 37792964 37792997 -105993458 + (TA)n Simple_repeat Simple_repeat 1 31 -407 1826 168 3 0 chr12 37792997 37793295 -105993160 + AluSx SINE Alu 1 299 -13 262 218 39 0 chr12 37793295 37793386 -105993069 + (TA)n Simple_repeat Simple_repeat 31 438 0 1520 207 19 10 chr12 37793666 37793975 -105992480 - MER44D DNA MER2_type -1 604 421 382 174 18 0 chr12 37793980 37794089 -105992366 + CT-rich Low_complexity Low_complexity 2 112 0 1707 193 7 0 chr12 37794092 37794397 -105992058 - AluSx SINE Alu -2 310 4 266 276 57 8 chr12 37794453 37794576 -105991879 + HAL1b LINE L1 1215 1343 -5 659 160 38 0 chr12 37794700 37794806 -105991649 + AluSq/x SINE Alu 2 111 -201 1799 131 8 8 chr12 37794834 37795101 -105991354 - AluSx SINE Alu -22 290 24 590 80 0 45 chr12 37795223 37795344 -105991111 - AluSg/x SINE Alu 0 309 203 192 77 0 0 chr12 37796924 37796950 -105989505 + (TG)n Simple_repeat Simple_repeat 1 26 0 221 130 0 43 chr12 37797192 37797238 -105989217 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 1232 213 4 34 chr12 37797319 37797582 -105988873 - AluJb SINE Alu -57 255 1 507 140 13 7 chr12 37797709 37797945 -105988510 + AluSx SINE Alu 1 310 0 1518 177 77 3 chr12 37798023 37798323 -105988132 - L1MB8 LINE L1 -9 6169 5848 333 0 0 0 chr12 37798414 37798451 -105988004 + (TG)n Simple_repeat Simple_repeat 2 38 0 1382 149 9 0 chr12 37798459 37798674 -105987781 - AluSg/x SINE Alu -17 295 79 1634 169 10 65 chr12 37798694 37799001 -105987454 - AluJb SINE Alu -20 292 3 868 119 22 15 chr12 37799008 37799142 -105987313 - FLAM_C SINE Alu -8 135 1 375 223 0 39 chr12 37799142 37799245 -105987210 - MER33 DNA MER1_type -189 135 37 2079 136 0 0 chr12 37799597 37799883 -105986572 - AluSx SINE Alu -16 296 11 456 51 0 0 chr12 37800003 37800062 -105986393 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1984 133 11 3 chr12 37800072 37800357 -105986098 - AluSq SINE Alu -26 287 1 807 193 7 0 chr12 37800360 37800500 -105985955 - AluY SINE Alu -170 141 1 220 133 22 22 chr12 37801480 37801525 -105984930 + GA-rich Low_complexity Low_complexity 2 46 0 1252 173 127 11 chr12 37801569 37801852 -105984603 - SST1 Satellite centromeric -10 1553 1238 830 142 0 15 chr12 37801858 37801992 -105984463 + AluSg/x SINE Alu 155 286 -24 7325 162 27 17 chr12 37802075 37803468 -105982987 - SST1 Satellite centromeric -157 1406 1 1297 297 61 53 chr12 37804020 37804852 -105981603 - SST1 Satellite centromeric -312 1251 413 516 278 69 19 chr12 37804863 37805079 -105981376 - SST1 Satellite centromeric -1331 232 6 265 115 16 16 chr12 37805768 37805829 -105980626 + (CA)n Simple_repeat Simple_repeat 1 61 0 245 196 18 0 chr12 37805832 37805888 -105980567 + GA-rich Low_complexity Low_complexity 1 57 0 249 33 0 0 chr12 37805888 37805918 -105980537 + (CA)n Simple_repeat Simple_repeat 2 31 0 2066 268 63 43 chr12 37805933 37807293 -105979162 - SST1 Satellite centromeric -1315 1387 1 249 210 16 0 chr12 37808015 37808077 -105978378 + GA-rich Low_complexity Low_complexity 1 63 0 222 91 0 0 chr12 37808077 37808110 -105978345 + (CA)n Simple_repeat Simple_repeat 2 34 0 2946 259 65 51 chr12 37808114 37809399 -105977056 - SST1 Satellite centromeric -1 1562 251 225 0 0 0 chr12 37809399 37809424 -105977031 + (CCCCAG)n Simple_repeat Simple_repeat 3 27 0 2946 259 65 51 chr12 37809424 37809679 -105976776 - SST1 Satellite centromeric -1312 251 1 1064 194 6 5 chr12 37809971 37813524 -105972931 + ALR/Alpha Satellite centromeric 1 3559 0 1019 191 27 1 chr12 37813539 37813864 -105972591 + ALR/Alpha Satellite centromeric 1 333 -82 341 165 10 0 chr12 37814488 37814585 -105971870 + (CA)n Simple_repeat Simple_repeat 1 98 0 397 279 66 69 chr12 37814590 37814998 -105971457 - SST1 Satellite centromeric -27 1536 1130 740 288 50 52 chr12 37815401 37815942 -105970513 - SST1 Satellite centromeric -892 671 132 244 287 0 0 chr12 37817022 37817116 -105969339 + (CA)n Simple_repeat Simple_repeat 1 94 0 608 283 123 40 chr12 37817449 37818028 -105968427 - SST1 Satellite centromeric -805 758 132 1010 173 11 3 chr12 37818138 37820410 -105966045 + ALR/Alpha Satellite centromeric 1 2289 -22 1225 166 7 3 chr12 37820423 37829859 -105956596 + ALR/Alpha Satellite centromeric 1 9397 -2555 252 0 0 0 chr12 37829859 37829887 -105956568 + (CA)n Simple_repeat Simple_repeat 1 28 0 1225 166 7 3 chr12 37829887 37831929 -105954526 + ALR/Alpha Satellite centromeric 9397 11880 -72 2211 111 0 46 chr12 37831929 37832253 -105954202 + AluY SINE Alu 1 309 -2 1225 166 7 3 chr12 37832253 37832326 -105954129 + ALR/Alpha Satellite centromeric 11880 11951 -1 180 111 0 0 chr12 37832327 37832354 -105954101 + (T)n Simple_repeat Simple_repeat 1 27 0 2455 104 0 0 chr12 37832354 37832680 -105953775 - LTR17 LTR ERV1 -454 326 1 9726 75 7 4 chr12 37832680 37833907 -105952548 - HERV17 LTR ERV1 0 8626 7397 1974 155 34 8 chr12 37833890 37834315 -105952140 - HERV17 LTR ERV1 -2947 5679 4746 * 1266 134 8 2 chr12 37834416 37839726 -105946729 - ALR/Alpha Satellite centromeric 0 5345 1 7788 34 6 0 chr12 37839844 37840723 -105945732 + L1PA4 LINE L1 5271 6154 -1 1902 133 0 61 chr12 37840744 37841074 -105945381 - AluSg SINE Alu 0 310 1 1120 119 6 0 chr12 37841076 37841253 -105945202 + L1P LINE L1 4999 5176 -970 463 167 0 0 chr12 37841435 37841501 -105944954 - AluJ/FLAM SINE Alu -246 66 1 1609 171 0 21 chr12 37841522 37841803 -105944652 - AluSx SINE Alu -3 309 35 3360 75 2 5 chr12 37841804 37842232 -105944223 + LTR14C LTR ERVK 6 432 -155 1093 167 8 3 chr12 37842333 37843315 -105943140 - ALR/Alpha Satellite centromeric -1 986 1 2073 149 3 0 chr12 37843531 37843833 -105942622 + AluSp SINE Alu 1 303 -10 422 244 105 108 chr12 37844011 37844420 -105942035 + L1M4c LINE L1 1088 1495 -4808 * 1004 338 18 6 chr12 37844388 37844903 -105941552 + L1M4c LINE L1 1304 1824 -4560 362 211 75 132 chr12 37844960 37845107 -105941348 + L1M4c LINE L1 1974 2128 -4256 2036 122 17 3 chr12 37845107 37845401 -105941054 + AluSx SINE Alu 1 298 -14 362 211 75 132 chr12 37845401 37845452 -105941003 + L1M4c LINE L1 2128 2156 -4228 1926 149 0 20 chr12 37845452 37845754 -105940701 + AluSg SINE Alu 1 296 -14 362 211 75 132 chr12 37845754 37845819 -105940636 + L1M4c LINE L1 2156 2223 -4161 269 291 31 16 chr12 37846181 37846308 -105940147 + LTR54B LTR ERV1 18 146 -352 1702 140 85 4 chr12 37846441 37846712 -105939743 + AluSg SINE Alu 1 293 -17 237 301 0 26 chr12 37847576 37847689 -105938766 + L1MC/D LINE L1 5665 5774 -585 2401 59 0 39 chr12 37848487 37848794 -105937661 + AluY SINE Alu 5 299 -12 210 281 169 0 chr12 37848864 37848953 -105937502 - L2 LINE L2 -498 2816 2713 1932 158 7 7 chr12 37849665 37850018 -105936437 - AluSx SINE Alu 0 354 2 755 274 53 55 chr12 37850052 37850628 -105935827 + L1M4c LINE L1 1185 1761 -4552 454 261 37 52 chr12 37850629 37850901 -105935554 + L1M4c LINE L1 1585 1852 -4532 2084 135 0 0 chr12 37851089 37851414 -105935041 + AluSq SINE Alu 1 313 0 770 239 22 28 chr12 37851458 37851638 -105934817 + AluJb SINE Alu 4 182 -130 264 228 38 25 chr12 37851679 37851758 -105934697 + L3 LINE CR1 1307 1386 -191 328 253 167 37 chr12 37851881 37852043 -105934412 + MER5A DNA MER1_type 7 189 0 1207 148 18 18 chr12 37853515 37853732 -105932723 - AluJo SINE Alu 0 312 96 1238 196 50 18 chr12 37853878 37854158 -105932297 - AluJo SINE Alu -23 289 1 974 190 0 16 chr12 37854174 37854358 -105932097 + FRAM SINE Alu 1 176 0 230 0 33 0 chr12 37854466 37854496 -105931959 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5088 66 36 0 chr12 37854508 37855142 -105931313 + MER11D LTR ERVK 1 657 -240 304 259 172 43 chr12 37856626 37856742 -105929713 - AluJb SINE Alu 0 302 172 689 165 0 9 chr12 37856742 37856851 -105929604 + AluJb SINE Alu 180 287 -25 220 143 0 24 chr12 37856942 37856984 -105929471 + (TTA)n Simple_repeat Simple_repeat 2 42 0 566 219 0 0 chr12 37856992 37857106 -105929349 - AluSg/x SINE Alu 0 309 196 299 201 59 46 chr12 37857106 37857258 -105929197 + AluJb SINE Alu 78 218 -84 1290 188 0 39 chr12 37857258 37857514 -105928941 - AluJb SINE Alu -54 258 13 348 145 35 48 chr12 37857547 37857692 -105928763 + CT-rich Low_complexity Low_complexity 2 144 0 1717 153 32 4 chr12 37858330 37858611 -105927844 - AluSx SINE Alu -23 289 1 207 0 0 0 chr12 37858643 37858666 -105927789 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1316 206 29 4 chr12 37858860 37859132 -105927323 - AluSg SINE Alu -31 279 1 356 292 153 15 chr12 37859195 37859397 -105927058 - LTR54B LTR ERV1 -254 244 15 1255 180 137 23 chr12 37859711 37859967 -105926488 + AluJb SINE Alu 1 285 -17 31 58 0 0 chr12 37860033 37860085 -105926370 + AT_rich Low_complexity Low_complexity 1 52 0 779 186 7 7 chr12 37860102 37860242 -105926213 - AluJb SINE Alu -171 141 2 227 54 27 0 chr12 37860246 37860283 -105926172 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 13492 40 0 0 chr12 37861034 37862672 -105923783 - L1PA2 LINE L1 -2326 3820 2183 13451 39 6 1 chr12 37862672 37864979 -105921476 + L1PA2 LINE L1 3840 6155 0 28 71 0 0 chr12 37864980 37865036 -105921419 + AT_rich Low_complexity Low_complexity 1 56 0 2348 105 3 3 chr12 37865128 37865441 -105921014 - AluSp SINE Alu 0 313 1 27 29 0 0 chr12 37865671 37865705 -105920750 + AT_rich Low_complexity Low_complexity 1 34 0 1915 130 0 7 chr12 37865723 37866041 -105920414 - AluSg SINE Alu 0 316 1 993 203 67 17 chr12 37866452 37866662 -105919793 + L1MB7 LINE L1 5904 6122 -58 569 233 16 8 chr12 37866662 37866791 -105919664 - FLAM_C SINE Alu -1 132 3 993 203 67 17 chr12 37866791 37866854 -105919601 + L1MB7 LINE L1 6122 6180 0 2214 136 0 0 chr12 37869482 37869791 -105916664 + AluSg SINE Alu 2 310 0 228 196 71 18 chr12 37870181 37870237 -105916218 + L1MCc LINE L1 858 916 -5507 263 111 0 19 chr12 37875178 37875232 -105911223 + (TA)n Simple_repeat Simple_repeat 2 54 0 1332 238 0 4 chr12 37875267 37875536 -105910919 - AluJo SINE Alu -44 268 1 443 207 0 0 chr12 37875572 37875659 -105910796 + AluJ/FRAM SINE Alu 226 312 0 1959 148 6 0 chr12 37876392 37876717 -105909738 + L1P LINE L1 4679 5005 -1141 40834 59 2 0 chr12 37876728 37881807 -105904648 + L1P LINE L1 4 5090 -1056 7466 78 3 2 chr12 37881907 37882857 -105903598 - HERV17 LTR ERV1 -3199 5427 4477 833 207 5 8 chr12 37882857 37883107 -105903348 + ALR/Alpha Satellite centromeric 1 249 -22 42630 60 3 1 chr12 37883110 37889245 -105897210 + L1PA4 LINE L1 1 6149 -6 1159 164 0 0 chr12 37889247 37889789 -105896666 + ALR/Alpha Satellite centromeric 1 542 -11 1195 158 4 5 chr12 37889801 37892961 -105893494 + ALR/Alpha Satellite centromeric 1 3156 -26 32 81 0 0 chr12 37893199 37893273 -105893182 + GC_rich Low_complexity Low_complexity 1 74 0 93 95 0 0 chr12 37893303 37893566 -105892889 + GC_rich Low_complexity Low_complexity 1 263 0 32 96 0 0 chr12 37893572 37893655 -105892800 + GC_rich Low_complexity Low_complexity 1 83 0 965 194 16 61 chr12 37894019 37894143 -105892312 - L1MB4 LINE L1 -205 5946 5818 1388 220 0 30 chr12 37894143 37894443 -105892012 - AluJb SINE Alu -20 292 2 965 194 16 61 chr12 37894443 37894599 -105891856 - L1MB4 LINE L1 -333 5818 5677 1445 173 0 0 chr12 37894666 37894891 -105891564 + AluJb SINE Alu 1 225 -87 1291 218 72 66 chr12 37894892 37895395 -105891060 - L1MB4 LINE L1 -504 5676 5187 420 300 7 0 chr12 37895493 37895643 -105890812 - L1MB4 LINE L1 -979 5167 5017 2528 148 19 7 chr12 37895647 37896065 -105890390 - L1PA14 LINE L1 -9 6152 5730 7571 199 49 21 chr12 37896105 37896420 -105890035 - L1PA14 LINE L1 -417 5744 5439 2298 122 0 0 chr12 37896420 37896723 -105889732 - AluSc SINE Alu -6 303 1 7571 199 49 21 chr12 37896723 37898742 -105887713 - L1PA14 LINE L1 -722 5439 3347 1733 269 43 28 chr12 37898781 37899494 -105886961 - L1MB4 LINE L1 -1115 5031 4308 1919 132 45 0 chr12 37899707 37899994 -105886461 + AluSq SINE Alu 1 300 -13 1197 309 30 23 chr12 37900242 37900679 -105885776 + LTR40a LTR ERVL 72 511 -8 322 292 117 0 chr12 37900956 37901076 -105885379 + HERVL40 LTR ERVL 1031 1164 -4366 1309 212 63 0 chr12 37901594 37901863 -105884592 - AluJb SINE Alu -25 287 2 21 36 0 0 chr12 37901913 37901941 -105884514 + AT_rich Low_complexity Low_complexity 1 28 0 288 267 23 118 chr12 37902304 37902525 -105883930 - MIR SINE MIR -18 244 45 667 91 0 0 chr12 37902874 37902962 -105883493 - HERV17 LTR ERV1 -3257 5369 5282 1739 164 0 17 chr12 37903076 37903386 -105883069 + AluSx SINE Alu 3 307 0 21 0 0 0 chr12 37903398 37903419 -105883036 + AT_rich Low_complexity Low_complexity 1 21 0 3689 228 48 15 chr12 37903517 37903817 -105882638 + L1M1 LINE L1 1453 1742 -5823 255 61 0 0 chr12 37903817 37903850 -105882605 + (CA)n Simple_repeat Simple_repeat 2 34 0 3689 228 48 15 chr12 37903850 37904359 -105882096 + L1M1 LINE L1 1742 2289 -5276 1395 136 120 12 chr12 37904377 37904635 -105881820 - AluSg SINE Alu -24 286 1 559 182 0 10 chr12 37904707 37904806 -105881649 + MER4A LTR ERV1 1 98 -566 1473 175 8 77 chr12 37904806 37905177 -105881278 + MER4A LTR ERV1 261 664 0 1771 151 58 0 chr12 37905551 37905842 -105880613 - AluSx SINE Alu -4 308 1 826 279 40 5 chr12 37906444 37906666 -105879789 + MIR SINE MIR 18 247 -15 1832 163 27 10 chr12 37906738 37907038 -105879417 + AluJb SINE Alu 1 305 -7 278 221 54 188 chr12 37907039 37907162 -105879293 + MIR SINE MIR 47 124 -138 2027 149 0 0 chr12 37907162 37907450 -105879005 + AluSx SINE Alu 1 288 -24 278 221 54 188 chr12 37907450 37907566 -105878889 + MIR SINE MIR 124 254 -8 526 264 113 59 chr12 37907588 37907763 -105878692 - MIR SINE MIR 0 262 69 1609 179 4 11 chr12 37907763 37908037 -105878418 - AluJo SINE Alu -23 289 18 526 264 113 59 chr12 37908037 37908100 -105878355 - MIR SINE MIR -193 69 11 24 0 0 0 chr12 37909729 37909753 -105876702 + AT_rich Low_complexity Low_complexity 1 24 0 1739 154 68 0 chr12 37910074 37910353 -105876102 - AluSx SINE Alu -14 298 1 1565 260 18 14 chr12 37910371 37910864 -105875591 - L1MB2 LINE L1 -3 6404 5910 500 256 47 24 chr12 37910851 37911062 -105875393 - L1MB2 LINE L1 -1285 5097 4882 * 7435 87 6 9 chr12 37911111 37912172 -105874283 - MER11C LTR ERVK -14 1057 1 180 0 0 0 chr12 37912188 37912208 -105874247 + (A)n Simple_repeat Simple_repeat 1 20 0 411 191 22 0 chr12 37912208 37912297 -105874158 - L1MB2 LINE L1 -1539 4843 4753 832 265 36 70 chr12 37912306 37912724 -105873731 - L1MB2 LINE L1 -3267 3115 2684 225 0 0 0 chr12 37912724 37912749 -105873706 + (CA)n Simple_repeat Simple_repeat 2 26 0 832 265 36 70 chr12 37912749 37912840 -105873615 - L1MB2 LINE L1 -3698 2684 2591 245 27 54 0 chr12 37912840 37912877 -105873578 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1943 79 79 0 chr12 37912883 37913137 -105873318 - AluY SINE Alu -36 275 2 832 265 36 70 chr12 37913137 37913420 -105873035 - L1MB2 LINE L1 -3796 2586 2347 1592 62 14 0 chr12 37913420 37913629 -105872826 - L1PA4 LINE L1 -7 6148 5937 1098 154 5 3 chr12 37913782 37921235 -105865220 + ALR/Alpha Satellite centromeric 1 7467 -55 869 264 47 41 chr12 37922156 37922520 -105863935 + MLT1B LTR MaLR 25 390 0 199 22 0 130 chr12 37923267 37923313 -105863142 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 903 235 12 68 chr12 37923313 37923653 -105862802 - L1MA9 LINE L1 -41 6271 5951 6213 23 0 0 chr12 37923925 37924678 -105861777 - L1PA3 LINE L1 0 6155 5403 * 8518 28 0 0 chr12 37924675 37925747 -105860708 + L1PA3 LINE L1 4326 5397 -749 627 164 0 15 chr12 37926809 37927079 -105859376 + AluSx SINE Alu 6 334 0 421 244 78 35 chr12 37927091 37927206 -105859249 + FRAM SINE Alu 5 124 -52 862 42 17 8 chr12 37927216 37927335 -105859120 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 1564 146 50 0 chr12 37927339 37927579 -105858876 + AluSc SINE Alu 50 301 -8 962 194 17 46 chr12 37927694 37927712 -105858743 - AluSg/x SINE Alu 0 312 295 2161 140 0 0 chr12 37927712 37928020 -105858435 - AluSg SINE Alu -2 308 1 962 194 17 46 chr12 37928020 37928238 -105858217 - AluSg/x SINE Alu -17 295 83 1961 119 0 31 chr12 37928246 37928566 -105857889 - AluSg SINE Alu 0 310 1 383 119 0 0 chr12 37928728 37928787 -105857668 - AluJ/FLAM SINE Alu -239 63 5 919 198 140 27 chr12 37928856 37929113 -105857342 - AluJo SINE Alu -16 286 1 219 69 0 0 chr12 37929149 37929178 -105857277 + (T)n Simple_repeat Simple_repeat 1 29 0 203 164 18 55 chr12 37929543 37929598 -105856857 + G-rich Low_complexity Low_complexity 2 54 0 972 216 25 4 chr12 37929671 37929916 -105856539 + L1PA13 LINE L1 5903 6152 -11 1886 126 7 7 chr12 37930125 37930418 -105856037 - AluSx SINE Alu -9 303 11 590 241 16 16 chr12 37930739 37930930 -105855525 - MER39B LTR ERV1 -1 652 462 620 210 0 7 chr12 37930931 37931069 -105855386 + MER39B LTR ERV1 275 411 -242 1842 156 4 0 chr12 37931287 37931562 -105854893 + AluSp SINE Alu 5 280 -33 201 180 33 33 chr12 37933100 37933161 -105853294 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 436 212 6 11 chr12 37933468 37933647 -105852808 + CT-rich Low_complexity Low_complexity 2 179 0 567 185 0 22 chr12 37933664 37933848 -105852607 + CT-rich Low_complexity Low_complexity 1 180 0 1146 156 8 2 chr12 37934004 37944649 -105841806 + ALR/Alpha Satellite centromeric 1 10702 -23 1010 174 0 6 chr12 37944807 37944979 -105841476 + AluSg/x SINE Alu 117 287 -25 198 0 0 0 chr12 37944982 37945004 -105841451 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5138 85 10 0 chr12 37945004 37945721 -105840734 + L1PA8 LINE L1 5359 6082 -90 566 110 0 0 chr12 37945721 37945803 -105840652 + AluS SINE Alu 1 82 -231 660 48 0 0 chr12 37945803 37945887 -105840568 + L1PA8 LINE L1 6071 6154 -18 490 208 60 40 chr12 37946540 37946689 -105839766 - MER93a LTR ERV1 0 402 251 2334 81 7 0 chr12 37946716 37947014 -105839441 + AluSp SINE Alu 1 300 -13 1990 124 0 20 chr12 37947101 37947400 -105839055 + AluY SINE Alu 6 298 -13 798 303 45 24 chr12 37947448 37947913 -105838542 - L1 LINE L1 -1830 4316 3842 309 200 62 0 chr12 37947922 37948002 -105838453 - L1 LINE L1 -2551 3595 3511 5456 73 0 4 chr12 37948142 37948895 -105837560 + HERVK11D LTR ERVK 113 862 -6890 30916 42 1 1 chr12 37948895 37952808 -105833647 + HERVK11D LTR ERVK 3073 6984 -768 4603 64 0 6 chr12 37952908 37953532 -105832923 + HERVK11D LTR ERVK 7133 7752 0 6147 87 27 0 chr12 37953554 37954404 -105832051 + MER11D LTR ERVK 25 897 0 1736 160 7 18 chr12 37954404 37954686 -105831769 - AluSx SINE Alu -33 279 1 278 304 106 50 chr12 37954801 37954962 -105831493 - MIR3 SINE MIR -9 199 30 217 254 17 0 chr12 37955725 37955784 -105830671 - L2 LINE L2 0 3313 3254 180 321 54 0 chr12 37955770 37955826 -105830629 - L2 LINE L2 -696 2618 2560 * 1877 160 26 11 chr12 37956826 37957309 -105829146 + L1M2 LINE L1 2536 3029 -3819 1104 145 4 1 chr12 37957410 37960472 -105825983 + ALR/Alpha Satellite centromeric 1 3069 -12 1190 147 7 3 chr12 37960487 37965513 -105820942 + ALR/Alpha Satellite centromeric 1 5045 -32 460 325 91 56 chr12 37965991 37966937 -105819518 + L1MEc LINE L1 36 1014 -5382 554 312 27 15 chr12 37966964 37967294 -105819161 + L1MEc LINE L1 1451 1784 -4612 11798 43 2 11 chr12 37968027 37970244 -105816211 + L1PA5 LINE L1 3928 6134 -20 311 232 10 32 chr12 37970353 37970466 -105815989 + L1ME2 LINE L1 5701 5808 -356 716 225 92 38 chr12 37970483 37970745 -105815710 + L1ME2 LINE L1 5888 6163 -1 1916 241 43 51 chr12 37970985 37971615 -105814840 + MLT1E2 LTR MaLR 1 625 -1 1363 156 135 32 chr12 37971746 37972086 -105814369 - THE1C LTR MaLR 0 375 1 416 340 153 0 chr12 37973637 37973840 -105812615 - MIR SINE MIR -4 258 25 1018 220 20 43 chr12 37974085 37974340 -105812115 + MER96B DNA MER1_type? 1 249 -168 405 341 76 31 chr12 37975202 37975492 -105810963 + HAL1b LINE L1 631 933 -415 1691 154 48 50 chr12 37976079 37976260 -105810195 + THE1C LTR MaLR 1 181 -194 1817 150 7 24 chr12 37976260 37976554 -105809901 + AluSx SINE Alu 7 295 -17 1691 154 48 50 chr12 37976554 37976748 -105809707 + THE1C LTR MaLR 181 375 0 1644 155 140 3 chr12 37976834 37977156 -105809299 - MER47A DNA MER2_type 0 366 1 204 97 0 0 chr12 37977175 37977206 -105809249 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 241 0 0 chr12 37977206 37977260 -105809195 + GA-rich Low_complexity Low_complexity 1 54 0 293 266 80 50 chr12 37977353 37977552 -105808903 + L1ME3A LINE L1 4132 4336 -1810 327 265 0 0 chr12 37977610 37977678 -105808777 - MER96B DNA MER1_type? -107 68 1 472 321 6 0 chr12 37977689 37977854 -105808601 + L1ME3A LINE L1 5401 5566 -604 244 259 0 0 chr12 37977859 37977913 -105808542 + L1ME3A LINE L1 5664 5717 -453 398 214 0 11 chr12 37977946 37978035 -105808420 + L1ME3A LINE L1 5797 5884 -286 1227 223 130 37 chr12 37978050 37978407 -105808048 - MLT1D LTR MaLR 0 505 94 2156 107 0 16 chr12 37978407 37978724 -105807731 - AluSx SINE Alu 0 312 1 1227 223 130 37 chr12 37978724 37978828 -105807627 - MLT1D LTR MaLR -411 94 1 22 94 0 0 chr12 37979015 37979079 -105807376 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr12 37979100 37979121 -105807334 + AT_rich Low_complexity Low_complexity 1 21 0 315 216 36 45 chr12 37979154 37979265 -105807190 + HAL1b LINE L1 1094 1203 -145 237 148 182 45 chr12 37979360 37979448 -105807007 - L1ME4a LINE L1 -41 6080 5981 * 287 186 106 53 chr12 37979423 37979536 -105806919 + HAL1b LINE L1 1228 1346 -2 280 294 95 95 chr12 37979608 37979829 -105806626 - MIR SINE MIR -12 250 30 1785 61 17 4 chr12 37981579 37981809 -105804646 + AluY SINE Alu 65 297 -14 202 182 36 0 chr12 37982462 37982517 -105803938 + (TA)n Simple_repeat Simple_repeat 1 57 0 405 198 12 0 chr12 37982894 37982975 -105803480 + MER94 DNA DNA 4 85 -49 415 314 93 11 chr12 37983143 37983423 -105803032 - L1ME4a LINE L1 -175 5946 5644 1254 218 45 23 chr12 37983583 37983891 -105802564 - MLT1A2 LTR MaLR 0 374 60 24 32 0 0 chr12 37985725 37985756 -105800699 + AT_rich Low_complexity Low_complexity 1 31 0 2970 158 84 24 chr12 37986514 37987284 -105799171 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 37987926 37987961 -105798494 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 37988201 37988230 -105798225 + AT_rich Low_complexity Low_complexity 1 29 0 1301 196 13 4 chr12 37988593 37988828 -105797627 + MER41D LTR ERV1 320 556 -1 882 277 174 22 chr12 37988834 37989335 -105797120 - HAL1 LINE L1 -364 2143 1567 1310 323 131 16 chr12 37989369 37989438 -105797017 - HAL1 LINE L1 -1037 1470 1410 369 0 0 0 chr12 37989438 37989479 -105796976 + (TG)n Simple_repeat Simple_repeat 2 42 0 1310 323 131 16 chr12 37989479 37990612 -105795843 - HAL1 LINE L1 -1097 1410 129 1754 160 3 31 chr12 37991335 37991657 -105794798 + AluSx SINE Alu 1 314 0 1874 129 48 40 chr12 37993127 37993499 -105792956 + THE1C LTR MaLR 1 375 0 2039 99 3 26 chr12 37994668 37994971 -105791484 - AluY SINE Alu -15 296 1 2024 141 0 3 chr12 37995232 37995537 -105790918 + AluSx SINE Alu 1 304 -8 569 247 39 56 chr12 37996113 37996344 -105790111 - L1MC5 LINE L1 -763 7198 6972 507 336 55 42 chr12 37996491 37996803 -105789652 + L1M3 LINE L1 5 320 -5571 378 350 35 65 chr12 37996904 37997289 -105789166 + L1M3 LINE L1 203 613 -5278 664 317 8 8 chr12 37997461 37997704 -105788751 + L1M3 LINE L1 668 910 -4991 9340 207 40 31 chr12 37997719 37999788 -105786667 + L1M3 LINE L1 2531 4639 -1353 1670 144 0 4 chr12 37999788 38000219 -105786236 + AluSx SINE Alu 40 312 0 9340 207 40 31 chr12 38000219 38001201 -105785254 + L1M3 LINE L1 4639 5610 -382 303 259 47 0 chr12 38001206 38001291 -105785164 + L1MC4 LINE L1 6615 6703 -1339 281 148 49 37 chr12 38001292 38001373 -105785082 + (TATG)n Simple_repeat Simple_repeat 1 82 0 1204 137 9 3 chr12 38001498 38009924 -105776531 + ALR/Alpha Satellite centromeric 1 8474 -1 2831 216 29 82 chr12 38009928 38010946 -105775509 + LTR5 LTR ERVK 6 969 0 1170 155 4 2 chr12 38010953 38015531 -105770924 + ALR/Alpha Satellite centromeric 1 4588 -50 1161 167 8 3 chr12 38015631 38029128 -105757327 + ALR/Alpha Satellite centromeric 1 13574 -102 6119 68 8 1 chr12 38029128 38030023 -105756432 + L1P LINE L1 2049 2949 -3197 991 194 13 5 chr12 38030160 38032779 -105753676 + ALR/Alpha Satellite centromeric 1 2955 -399 1825 141 3 49 chr12 38032779 38033084 -105753371 + AluY SINE Alu 1 291 -20 991 194 13 5 chr12 38033084 38033487 -105752968 + ALR/Alpha Satellite centromeric 2955 3353 -1 1665 195 7 3 chr12 38033487 38033779 -105752676 + AluSp SINE Alu 1 293 -20 969 175 2 1 chr12 38033795 38034810 -105751645 + ALR/Alpha Satellite centromeric 1 1015 -15 2820 168 23 51 chr12 38034810 38035207 -105751248 - L1P LINE L1 -4369 1777 1406 1968 102 4 4 chr12 38035207 38035473 -105750982 - AluY SINE Alu -45 266 1 2820 168 23 51 chr12 38035473 38035765 -105750690 - L1P LINE L1 -4740 1406 1107 1790 189 0 3 chr12 38035771 38036068 -105750387 - AluSg SINE Alu -14 296 1 674 181 7 7 chr12 38036826 38036964 -105749491 + AluJb SINE Alu 4 141 -171 30 27 0 0 chr12 38036981 38037018 -105749437 + AT_rich Low_complexity Low_complexity 1 37 0 180 111 0 0 chr12 38037082 38037109 -105749346 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 829 255 139 24 chr12 38037109 38037360 -105749095 - AluJb SINE Alu -32 280 1 2111 145 0 0 chr12 38037938 38038241 -105748214 + AluSq SINE Alu 1 303 -10 297 0 0 0 chr12 38038701 38038734 -105747721 + (A)n Simple_repeat Simple_repeat 1 33 0 875 200 6 5 chr12 38038740 38039714 -105746741 + ALR/Alpha Satellite centromeric 1 974 -86 881 200 5 10 chr12 38039741 38043640 -105742815 + ALR/Alpha Satellite centromeric 1 3881 -14 753 215 11 0 chr12 38043656 38044156 -105742299 + ALR/Alpha Satellite centromeric 1 505 -7 987 201 11 4 chr12 38044172 38044568 -105741887 + ALR/Alpha Satellite centromeric 1 393 -3029 2173 86 55 0 chr12 38044568 38044858 -105741597 + AluY SINE Alu 3 308 -3 987 201 11 4 chr12 38044858 38047550 -105738905 + ALR/Alpha Satellite centromeric 393 3401 -21 942 184 0 6 chr12 38047596 38047754 -105738701 + AluJb SINE Alu 137 293 -19 1954 148 3 0 chr12 38047757 38048047 -105738408 + AluY SINE Alu 1 291 -20 4468 177 29 14 chr12 38048061 38049027 -105737428 - L1MC2 LINE L1 -3 6341 5361 193 344 78 23 chr12 38049554 38049682 -105736773 - MIR SINE MIR -116 146 12 1008 157 0 0 chr12 38050335 38050575 -105735880 + (TA)n Simple_repeat Simple_repeat 1 240 0 1567 125 5 0 chr12 38050697 38050913 -105735542 - AluSq SINE Alu -96 217 1 1727 182 7 3 chr12 38051263 38051554 -105734901 + AluSx SINE Alu 1 292 -20 2007 144 13 0 chr12 38052415 38052713 -105733742 + AluSx SINE Alu 1 302 -10 1650 133 0 116 chr12 38052725 38053062 -105733393 + AluJo SINE Alu 5 302 0 2039 135 3 0 chr12 38053070 38053366 -105733089 + AluSq SINE Alu 1 297 -16 1097 113 25 12 chr12 38053486 38053646 -105732809 + AluSx SINE Alu 1 162 -150 1065 176 49 6 chr12 38053766 38056419 -105730036 - GSATX Satellite centromeric 0 2768 1 321 317 67 0 chr12 38056561 38056681 -105729774 + L1MDb LINE L1 598 725 -5684 28 61 0 0 chr12 38056755 38056804 -105729651 + GC_rich Low_complexity Low_complexity 1 49 0 207 167 0 0 chr12 38057039 38057075 -105729380 + C-rich Low_complexity Low_complexity 1 36 0 44 35 0 0 chr12 38057134 38057192 -105729263 + GC_rich Low_complexity Low_complexity 1 58 0 192 200 0 0 chr12 38057200 38057255 -105729200 + C-rich Low_complexity Low_complexity 1 55 0 981 166 4 3 chr12 38057296 38060082 -105726373 + ALR/Alpha Satellite centromeric 1 2788 -28 1611 194 10 3 chr12 38060206 38060495 -105725960 + AluSp SINE Alu 3 293 -20 1038 179 11 7 chr12 38060497 38062769 -105723686 + ALR/Alpha Satellite centromeric 1 2281 -51 4367 76 0 2 chr12 38063175 38063743 -105722712 - MER11D LTR ERVK -330 567 1 230 0 33 0 chr12 38063755 38063785 -105722670 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 979 196 0 16 chr12 38063893 38064077 -105722378 - FRAM SINE Alu 0 176 1 1206 204 50 18 chr12 38064093 38064372 -105722083 + AluJo SINE Alu 1 288 -24 79 66 0 0 chr12 38064495 38064632 -105721823 + GC_rich Low_complexity Low_complexity 1 137 0 286 260 219 8 chr12 38065795 38065918 -105720537 - MER5A DNA MER1_type 0 189 41 1097 159 5 16 chr12 38065925 38066980 -105719475 + ALR/Alpha Satellite centromeric 1 1043 -11 767 216 0 8 chr12 38067114 38067365 -105719090 + ALR/Alpha Satellite centromeric 1 249 -22 10454 126 12 5 chr12 38067368 38069073 -105717382 + L1P LINE L1 1 1717 -4429 9331 87 5 24 chr12 38069251 38069567 -105716888 - L1P4 LINE L1 -418 5743 5423 2344 122 0 0 chr12 38069567 38069870 -105716585 - AluSc SINE Alu -6 303 1 9331 87 5 24 chr12 38069870 38071283 -105715172 - L1P4 LINE L1 -738 5423 4051 1196 164 51 2 chr12 38071387 38072759 -105713696 - GSATX Satellite centromeric -9 1439 1 1149 164 46 2 chr12 38073488 38074649 -105711806 + GSATX Satellite centromeric 1 1211 -19 5188 156 53 11 chr12 38075129 38076245 -105710210 - L1M1 LINE L1 -4311 3254 2092 259 332 97 24 chr12 38076341 38076588 -105709867 - L1M1 LINE L1 -5525 2040 1776 33 25 0 0 chr12 38077099 38077139 -105709316 + GC_rich Low_complexity Low_complexity 1 40 0 225 222 0 0 chr12 38078781 38078826 -105707629 - MLT1H1 LTR MaLR 0 590 546 38 39 0 0 chr12 38078829 38078881 -105707574 + AT_rich Low_complexity Low_complexity 1 52 0 570 304 67 32 chr12 38078923 38079351 -105707104 - MLT1H1 LTR MaLR -120 447 1 103 75 0 0 chr12 38080080 38080213 -105706242 + GC_rich Low_complexity Low_complexity 1 133 0 1078 173 51 4 chr12 38080348 38081349 -105705106 - GSATX Satellite centromeric -8 1047 1 778 184 11 0 chr12 38081881 38082113 -105704342 - ALR/Alpha Satellite centromeric 0 234 1 5379 56 11 4 chr12 38082115 38082835 -105703620 - L1PA4 LINE L1 -1 6154 5430 1092 142 10 24 chr12 38083532 38083824 -105702631 + ALR/Alpha Satellite centromeric 1 296 -382 2229 115 0 47 chr12 38083824 38084146 -105702309 + AluY SINE Alu 1 307 -4 1092 142 10 24 chr12 38084146 38084219 -105702236 + ALR/Alpha Satellite centromeric 296 677 -1 180 111 0 0 chr12 38084220 38084247 -105702208 + (T)n Simple_repeat Simple_repeat 1 27 0 2260 117 0 0 chr12 38084247 38084573 -105701882 - LTR17 LTR ERV1 -454 326 1 38 61 0 0 chr12 38084605 38084654 -105701801 + GC_rich Low_complexity Low_complexity 1 49 0 133 48 0 42 chr12 38084669 38084982 -105701473 + GC_rich Low_complexity Low_complexity 1 300 0 869 206 67 0 chr12 38185031 38185211 -105601244 - MLT2C1 LTR ERVL -56 341 150 2288 176 8 0 chr12 38187090 38187476 -105598979 - MLT1B LTR MaLR -1 389 1 531 141 174 83 chr12 38187820 38187851 -105598604 - MLT1C LTR MaLR -33 434 407 2231 64 41 0 chr12 38187851 38188146 -105598309 + AluY SINE Alu 1 307 -4 531 141 174 83 chr12 38188146 38188235 -105598220 - MLT1C LTR MaLR -60 407 336 585 280 28 14 chr12 38189463 38189674 -105596781 + LTR16C LTR ERVL 267 480 -11 2238 82 30 0 chr12 38190801 38191105 -105595350 - AluSq SINE Alu 0 313 1 200 342 117 8 chr12 38191596 38191716 -105594739 - MIR SINE MIR -46 216 84 590 209 37 8 chr12 38192456 38192590 -105593865 - L1MC1 LINE L1 0 6333 6196 272 238 12 38 chr12 38193363 38193443 -105593012 + MIR SINE MIR 80 157 -105 636 207 7 7 chr12 38193506 38193641 -105592814 - MIR SINE MIR -106 156 22 1803 197 29 18 chr12 38193944 38194330 -105592125 + MLT1B LTR MaLR 1 390 0 528 157 101 82 chr12 38194999 38195158 -105591297 + MLT1C LTR MaLR 17 178 -289 1895 215 45 22 chr12 38195522 38195800 -105590655 - MLT1C LTR MaLR -1 466 196 228 67 0 0 chr12 38195800 38195830 -105590625 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2136 92 0 3 chr12 38195830 38196114 -105590341 - AluSx SINE Alu -29 283 1 1895 215 45 22 chr12 38196114 38196281 -105590174 - MLT1C LTR MaLR -270 197 10 1996 135 3 0 chr12 38197272 38197568 -105588887 + AluSx SINE Alu 1 297 -15 201 161 0 0 chr12 38197642 38197673 -105588782 + (TG)n Simple_repeat Simple_repeat 1 31 0 236 279 15 0 chr12 38197886 38197954 -105588501 - L1ME3 LINE L1 -2 6160 6092 777 112 0 0 chr12 38198017 38198124 -105588331 + AluSg/x SINE Alu 198 304 -8 433 120 13 13 chr12 38198926 38199001 -105587454 - L1MC2 LINE L1 -8 6336 6262 2119 125 3 3 chr12 38200055 38200366 -105586089 - AluSx SINE Alu -1 311 1 213 281 35 61 chr12 38200664 38200778 -105585677 - MER5B DNA MER1_type -62 116 6 433 293 19 25 chr12 38201276 38201433 -105585022 + Zaphod DNA AcHobo 275 430 -3601 1886 127 21 0 chr12 38202222 38202505 -105583950 - AluSx SINE Alu -10 302 14 1790 164 26 78 chr12 38204186 38204245 -105582210 - MLT1A1 LTR MaLR 0 365 304 2155 87 0 3 chr12 38204245 38204533 -105581922 + AluSq SINE Alu 22 308 -5 1790 164 26 78 chr12 38204533 38204858 -105581597 - MLT1A1 LTR MaLR -61 304 1 1204 114 59 25 chr12 38205326 38205528 -105580927 - THE1B LTR MaLR 0 364 156 2125 118 7 0 chr12 38205529 38205826 -105580629 + AluSx SINE Alu 1 299 -13 562 80 68 23 chr12 38205834 38205922 -105580533 - THE1B LTR MaLR -272 92 1 2028 117 0 0 chr12 38206880 38207242 -105579213 - AluSx SINE Alu 0 362 1 591 137 0 63 chr12 38209677 38209867 -105576588 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 412 18 35 0 chr12 38209889 38209946 -105576509 + (CTAAT)n Simple_repeat Simple_repeat 5 63 0 241 67 22 22 chr12 38209956 38210001 -105576454 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 762 182 30 0 chr12 38210001 38210133 -105576322 - FRAM SINE Alu -28 148 13 2473 234 89 43 chr12 38210133 38210928 -105575527 - MER97a DNA MER1_type? -54 840 9 1427 48 5 21 chr12 38210976 38211201 -105575254 + AluY SINE Alu 99 320 0 1676 166 24 7 chr12 38211217 38211513 -105574942 + AluJb SINE Alu 1 301 -11 2263 86 3 0 chr12 38211513 38211804 -105574651 + AluSp SINE Alu 1 292 -21 424 192 19 0 chr12 38211812 38211916 -105574539 + (CA)n Simple_repeat Simple_repeat 2 107 0 2334 79 7 0 chr12 38211918 38212223 -105574232 + AluY SINE Alu 1 307 -4 321 89 0 0 chr12 38212227 38212272 -105574183 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 385 18 0 chr12 38213281 38213390 -105573065 + MLT1K LTR MaLR 188 298 -290 249 386 47 8 chr12 38213528 38213655 -105572800 - L2 LINE L2 -4 3268 3137 234 247 39 0 chr12 38215127 38215190 -105571265 - MIR SINE MIR -84 124 50 1628 194 0 29 chr12 38216676 38216985 -105569470 - AluJo SINE Alu -12 300 1 605 234 0 0 chr12 38217080 38217187 -105569268 + FLAM_C SINE Alu 10 116 -27 417 54 0 0 chr12 38217187 38217243 -105569212 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1321 161 107 43 chr12 38217370 38217650 -105568805 - AluJo SINE Alu -14 298 1 263 282 13 13 chr12 38217802 38217880 -105568575 + GA-rich Low_complexity Low_complexity 2 79 0 238 278 124 53 chr12 38218667 38218836 -105567619 + MIR SINE MIR 7 187 -75 708 260 178 10 chr12 38219842 38220134 -105566321 + MER20B DNA MER1_type 68 408 -375 2408 85 0 0 chr12 38220353 38220659 -105565796 - AluSq SINE Alu -7 306 1 329 264 32 16 chr12 38220662 38220787 -105565668 + MER20B DNA MER1_type 654 780 -3 273 89 0 0 chr12 38222316 38222361 -105564094 + (CA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr12 38222996 38223019 -105563436 + AT_rich Low_complexity Low_complexity 1 23 0 2245 108 0 6 chr12 38224171 38224485 -105561970 + AluSx SINE Alu 1 312 0 202 303 220 0 chr12 38224533 38224642 -105561813 - L2 LINE L2 -3 3269 3137 1248 245 97 30 chr12 38224671 38225104 -105561351 + MLT1C LTR MaLR 6 467 0 329 302 67 13 chr12 38225190 38225339 -105561116 + MER5A DNA MER1_type 18 174 -15 1044 90 0 0 chr12 38225860 38225993 -105560462 + AluSq/x SINE Alu 1 133 -180 1579 106 0 103 chr12 38225997 38226156 -105560299 + AluSc SINE Alu 1 120 -189 2136 108 10 0 chr12 38226156 38226453 -105560002 + AluSp SINE Alu 1 300 -13 1579 106 0 103 chr12 38226453 38226575 -105559880 + AluSc SINE Alu 120 253 -56 691 376 19 24 chr12 38326825 38327415 -105459040 + L1PA13 LINE L1 788 1374 -6200 286 260 21 21 chr12 38327565 38327661 -105458794 + L1PA13 LINE L1 2085 2180 -5401 461 248 0 0 chr12 38327923 38328036 -105458419 + FRAM SINE Alu 63 175 -1 332 331 36 26 chr12 38328049 38328204 -105458251 + MIR3 SINE MIR 31 187 -21 333 371 66 65 chr12 38328293 38328720 -105457735 - L2 LINE L2 -49 3223 2796 2205 83 33 3 chr12 38328740 38329040 -105457415 - AluY SINE Alu -2 309 1 8432 38 27 0 chr12 38329297 38330390 -105456065 + L1P LINE L1 3589 4711 -1435 23 68 0 0 chr12 38330865 38330909 -105455546 + AT_rich Low_complexity Low_complexity 1 44 0 2035 167 96 15 chr12 38330994 38331402 -105455053 - MER65A LTR ERV1 -4 441 1 241 309 31 0 chr12 38331402 38331499 -105454956 - MER81 DNA DNA -6 108 9 1787 150 34 50 chr12 38331499 38331880 -105454575 + THE1C LTR MaLR 1 375 0 682 241 7 28 chr12 38331947 38332092 -105454363 + MER5A DNA MER1_type 1 142 -47 2230 25 2 0 chr12 38332696 38333122 -105453333 - L1P1 LINE L1 -630 5525 5099 10231 43 12 3 chr12 38333122 38335158 -105451297 + L1PA5 LINE L1 4106 6154 0 349 303 147 52 chr12 38335482 38335713 -105450742 + MIR SINE MIR 10 262 0 204 40 0 0 chr12 38336643 38336668 -105449787 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 198 342 59 53 chr12 38337748 38337900 -105448555 - MIR3 SINE MIR -3 205 53 206 242 94 30 chr12 38338054 38338155 -105448300 + MER5B DNA MER1_type 12 105 -73 232 224 47 24 chr12 38338642 38338727 -105447728 + MLT1I LTR MaLR 306 392 -17 21 36 0 0 chr12 38339066 38339094 -105447361 + AT_rich Low_complexity Low_complexity 1 28 0 1599 220 7 0 chr12 38340078 38340387 -105446068 + AluJo SINE Alu 1 311 -1 402 355 14 0 chr12 38340414 38340555 -105445900 + MIR3 SINE MIR 45 187 -21 295 374 42 60 chr12 38340641 38341071 -105445384 - L2 LINE L2 -46 3226 2796 2393 53 33 3 chr12 38341091 38341391 -105445064 - AluY SINE Alu -2 309 1 785 272 7 22 chr12 38341730 38342006 -105444449 - L1PBa LINE L1 -6586 277 6 532 257 106 41 chr12 38342031 38342166 -105444289 + L2 LINE L2 3005 3130 -183 2063 134 39 3 chr12 38342166 38342501 -105443954 + MER7A DNA MER2_type 1 345 -1 532 257 106 41 chr12 38342501 38342610 -105443845 + L2 LINE L2 3130 3265 -48 326 104 42 0 chr12 38343969 38344017 -105442438 + MIR SINE MIR 56 105 -157 22 0 0 0 chr12 38344353 38344375 -105442080 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 38345655 38345684 -105440771 + AT_rich Low_complexity Low_complexity 1 29 0 301 307 136 7 chr12 38346199 38346339 -105440116 + L2 LINE L2 2699 2856 -458 208 336 97 0 chr12 38346385 38346498 -105439957 + L2 LINE L2 2924 3047 -225 860 280 25 13 chr12 38346649 38346885 -105439570 - MIR SINE MIR -10 252 14 324 313 170 9 chr12 38346903 38347015 -105439440 + L2 LINE L2 3134 3263 -9 364 314 124 29 chr12 38347841 38348051 -105438404 - MIR SINE MIR -32 230 1 4706 209 16 3 chr12 38349203 38350348 -105436107 - L1 LINE L1 -1862 4284 3126 7659 129 31 8 chr12 38350356 38351774 -105434681 - L1PBa LINE L1 -4081 2782 1332 2274 165 110 12 chr12 38351791 38352300 -105434155 - L1PBa LINE L1 -5700 1163 605 633 133 8 23 chr12 38352332 38352460 -105433995 - LTR14B LTR ERVK 0 608 483 1336 173 32 7 chr12 38352715 38352992 -105433463 - L1P4 LINE L1 -493 5673 5390 359 176 0 0 chr12 38352996 38353064 -105433391 + L1P4 LINE L1 5304 5371 -795 24268 78 171 1 chr12 38353631 38357501 -105428954 - L1P LINE L1 -1575 4571 45 24 53 0 0 chr12 38358189 38358227 -105428228 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 38358416 38358437 -105428018 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 38358563 38358597 -105427858 + AT_rich Low_complexity Low_complexity 1 34 0 1937 158 38 97 chr12 38358597 38359122 -105427333 + L1PA16 LINE L1 5652 6145 -21 13973 242 82 21 chr12 38359133 38362034 -105424421 + L1M1 LINE L1 17 2739 -4826 1717 29 0 5 chr12 38362034 38362244 -105424211 + L1PA3 LINE L1 5944 6152 -3 13973 242 82 21 chr12 38362244 38364292 -105422163 + L1M1 LINE L1 2739 5320 -2245 2100 140 7 3 chr12 38364292 38364592 -105421863 + AluSx SINE Alu 1 304 -8 228 35 0 0 chr12 38364592 38364621 -105421834 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 13973 242 82 21 chr12 38364628 38364989 -105421466 + L1M1 LINE L1 5320 5657 -1908 1984 196 38 17 chr12 38365004 38365423 -105421032 + MSTA LTR MaLR 1 428 0 6116 213 110 58 chr12 38365425 38366925 -105419530 + MSTA-int LTR MaLR 3 1651 0 1551 239 62 10 chr12 38366927 38367332 -105419123 + MSTA LTR MaLR 3 428 0 3395 217 24 20 chr12 38367332 38368223 -105418232 + L1M1 LINE L1 5668 6561 -1004 3437 73 5 2 chr12 38368323 38368764 -105417691 + SVA Other Other 941 1382 -4 651 250 158 10 chr12 38369449 38369645 -105416810 + MIR SINE MIR 6 230 -32 270 364 120 26 chr12 38370537 38370845 -105415610 - L3 LINE CR1 -248 1329 993 534 319 91 26 chr12 38370884 38371116 -105415339 + MIR SINE MIR 8 254 -8 619 153 29 58 chr12 38371254 38371391 -105415064 + FLAM_C SINE Alu 6 138 -5 329 206 11 0 chr12 38371392 38371484 -105414971 + (TA)n Simple_repeat Simple_repeat 2 94 0 24 67 0 0 chr12 38371940 38371985 -105414470 + AT_rich Low_complexity Low_complexity 1 45 0 1217 93 137 10 chr12 38372186 38372285 -105414170 + MER30 DNA MER1_type 1 86 -144 395 0 0 39 chr12 38372285 38372337 -105414118 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1217 93 137 10 chr12 38372337 38372441 -105414014 + MER30 DNA MER1_type 86 230 0 2193 108 3 3 chr12 38374174 38374480 -105411975 + AluSq SINE Alu 1 306 -7 3339 163 18 20 chr12 38375361 38376019 -105410436 + L1MA7 LINE L1 5619 6275 -16 23 0 0 0 chr12 38376019 38376042 -105410413 + AT_rich Low_complexity Low_complexity 1 23 0 1112 217 91 78 chr12 38376094 38376555 -105409900 + MLT1C LTR MaLR 1 467 0 21 36 0 0 chr12 38377011 38377039 -105409416 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr12 38377494 38377530 -105408925 + AT_rich Low_complexity Low_complexity 1 36 0 963 282 32 66 chr12 38378120 38378623 -105407832 + L1MCc LINE L1 651 1136 -5287 342 0 0 0 chr12 38378624 38378662 -105407793 + (TG)n Simple_repeat Simple_repeat 2 39 0 918 280 47 9 chr12 38378674 38379017 -105407438 - L1ME LINE L1 -498 5672 5317 411 194 0 11 chr12 38379019 38379112 -105407343 + L1PA13 LINE L1 6065 6156 -7 1037 225 84 3 chr12 38379318 38379602 -105406853 + MER5C DNA MER1_type 12 318 -6 28 0 0 0 chr12 38379713 38379741 -105406714 + AT_rich Low_complexity Low_complexity 1 28 0 183 204 0 0 chr12 38380209 38380253 -105406202 + T-rich Low_complexity Low_complexity 1 44 0 307 145 16 16 chr12 38380436 38380498 -105405957 - L1ME1 LINE L1 -3 6163 6102 48 53 0 0 chr12 38380884 38380960 -105405495 + AT_rich Low_complexity Low_complexity 1 76 0 293 335 50 41 chr12 38380986 38381207 -105405248 + MLT1I LTR MaLR 132 354 -55 26 0 0 0 chr12 38382691 38382717 -105403738 + AT_rich Low_complexity Low_complexity 1 26 0 1273 39 0 0 chr12 38383132 38383288 -105403167 - L1PA4 LINE L1 -4 6151 5996 227 267 256 0 chr12 38384485 38384571 -105401884 - L2 LINE L2 -1 3312 3205 286 258 61 61 chr12 38384654 38384766 -105401689 + MER3 DNA MER1_type 12 126 -83 1478 121 5 0 chr12 38384766 38384973 -105401482 - AluSg/x SINE Alu -21 289 82 286 258 61 61 chr12 38384973 38385058 -105401397 + MER3 DNA MER1_type 125 209 0 1566 179 36 4 chr12 38385264 38385538 -105400917 + AluJb SINE Alu 1 283 -29 258 81 0 0 chr12 38385545 38385582 -105400873 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr12 38385752 38385773 -105400682 + AT_rich Low_complexity Low_complexity 1 21 0 320 366 91 11 chr12 38385861 38386047 -105400408 - MIR SINE MIR -32 230 30 1722 229 56 0 chr12 38386058 38386434 -105400021 + MLT1D LTR MaLR 1 495 -122 259 308 67 29 chr12 38387387 38387491 -105398964 - MIR SINE MIR -64 144 49 280 269 173 0 chr12 38387919 38388023 -105398432 - MIR SINE MIR -73 189 68 4297 275 76 37 chr12 38388225 38391113 -105395342 - L1PA15-16 LINE L1 -2046 5538 2529 2096 151 8 30 chr12 38391121 38391493 -105394962 + THE1B LTR MaLR 1 364 0 656 113 28 0 chr12 38391493 38391599 -105394856 + THE1B-int LTR MaLR 1 109 -1471 1346 193 14 41 chr12 38391699 38391989 -105394466 + THE1B LTR MaLR 83 364 0 10960 99 12 38 chr12 38391989 38393609 -105392846 + THE1B-int LTR MaLR 1 1578 -2 2134 134 8 52 chr12 38393611 38393992 -105392463 + THE1B LTR MaLR 1 364 0 818 311 6 22 chr12 38393996 38394318 -105392137 - L1PA15-16 LINE L1 -5074 2507 2191 363 238 30 20 chr12 38394562 38394663 -105391792 - L1PA15-16 LINE L1 -5395 2186 2085 1025 368 17 20 chr12 38394813 38395402 -105391053 - L1PA15-16 LINE L1 -6200 1374 788 442 228 0 0 chr12 38395871 38395963 -105390492 + L2 LINE L2 3222 3313 0 329 363 51 25 chr12 38396061 38396218 -105390237 - MIR3 SINE MIR -28 180 20 23 0 0 0 chr12 38399099 38399122 -105387333 + AT_rich Low_complexity Low_complexity 1 23 0 374 367 67 24 chr12 38399413 38399784 -105386671 - L2 LINE L2 -679 2635 2249 236 256 267 0 chr12 38400323 38400413 -105386042 + MIR SINE MIR 28 141 -67 658 258 16 52 chr12 38400729 38400923 -105385532 + MER5A DNA MER1_type 3 189 0 444 242 189 8 chr12 38400936 38401068 -105385387 + MER5A DNA MER1_type 28 183 -6 419 250 0 0 chr12 38401071 38401147 -105385308 + AluJ/FLAM SINE Alu 3 78 -234 676 247 16 52 chr12 38401593 38401787 -105384668 + MER5A DNA MER1_type 3 189 0 465 235 189 8 chr12 38401800 38401932 -105384523 + MER5A DNA MER1_type 28 183 -6 1650 209 0 3 chr12 38401935 38402217 -105384238 + AluJb SINE Alu 3 283 -29 24 0 0 0 chr12 38403440 38403464 -105382991 + AT_rich Low_complexity Low_complexity 1 24 0 276 355 73 8 chr12 38404775 38404899 -105381556 + MIR SINE MIR 20 151 -57 487 292 152 8 chr12 38407095 38407359 -105379096 - L2 LINE L2 0 3313 3012 707 330 171 31 chr12 38407427 38407946 -105378509 - L2 LINE L2 -376 2938 2347 236 336 9 0 chr12 38411748 38411861 -105374594 + (CA)n Simple_repeat Simple_repeat 2 115 0 32435 51 7 3 chr12 38412618 38418619 -105367836 + L1PA4 LINE L1 121 6141 -14 285 281 117 0 chr12 38419199 38419327 -105367128 - MIR SINE MIR 0 262 120 189 0 0 0 chr12 38420549 38420570 -105365885 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 28 71 0 0 chr12 38421353 38421409 -105365046 + AT_rich Low_complexity Low_complexity 1 56 0 560 189 76 185 chr12 38421601 38421953 -105364502 - LTR28 LTR ERV1 -101 906 1 726 308 161 9 chr12 38423184 38423525 -105362930 - MLT1J LTR MaLR -30 481 89 22 0 0 0 chr12 38423642 38423664 -105362791 + AT_rich Low_complexity Low_complexity 1 22 0 1335 249 71 51 chr12 38424400 38424890 -105361565 - MLT1D LTR MaLR 0 505 6 1410 195 104 36 chr12 38427102 38427511 -105358944 - MSTD LTR MaLR 0 396 1 1275 223 42 72 chr12 38427738 38428124 -105358331 - MLT1A2 LTR MaLR 0 374 1 424 260 75 55 chr12 38429595 38429795 -105356660 + L2 LINE L2 3109 3312 -1 1873 247 67 49 chr12 38430036 38430651 -105355804 - MLT1E2 LTR MaLR 0 626 1 23 33 0 0 chr12 38430734 38430764 -105355691 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr12 38431123 38431159 -105355296 + AT_rich Low_complexity Low_complexity 1 36 0 1871 270 107 9 chr12 38432164 38432924 -105353531 - L1ME3A LINE L1 -31 6139 5306 1992 211 43 64 chr12 38433591 38434105 -105352350 + MLT2B3 LTR ERVL 1 413 -40 223 191 29 0 chr12 38434105 38434173 -105352282 + (TA)n Simple_repeat Simple_repeat 2 71 0 358 89 0 78 chr12 38434186 38434279 -105352176 + MLT2B3 LTR ERVL 441 554 0 932 263 93 17 chr12 38434456 38434756 -105351699 + LTR50 LTR ERVL 1 323 -472 851 259 99 14 chr12 38434798 38435150 -105351305 + LTR50 LTR ERVL 414 795 0 335 113 14 0 chr12 38436548 38436619 -105349836 + (TG)n Simple_repeat Simple_repeat 1 72 0 316 220 0 0 chr12 38436632 38436682 -105349773 - MER75 DNA T2_type -443 71 22 550 268 64 0 chr12 38436818 38436975 -105349480 + MIR SINE MIR 94 260 -2 21 0 0 0 chr12 38438353 38438374 -105348081 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 38438553 38438589 -105347866 + AT_rich Low_complexity Low_complexity 1 36 0 3255 118 12 16 chr12 38438589 38439105 -105347350 - MER75 DNA T2_type 0 514 1 2475 194 38 19 chr12 38439310 38439836 -105346619 - MER89 LTR ERV1 -23 536 1 391 270 171 25 chr12 38440447 38440721 -105345734 + L2 LINE L2 1938 2251 -1063 2079 189 50 23 chr12 38441792 38442232 -105344223 + MSTB2 LTR MaLR 1 452 -5 1094 67 0 0 chr12 38442400 38442534 -105343921 + AluY SINE Alu 168 301 -10 2035 141 30 49 chr12 38443062 38443432 -105343023 + THE1B LTR MaLR 2 364 0 840 269 58 10 chr12 38443509 38443821 -105342634 - MER46C DNA MER2_type 0 338 12 523 275 36 7 chr12 38443825 38443963 -105342492 - MIR SINE MIR -120 142 1 271 352 116 37 chr12 38444083 38444438 -105342017 - L3 LINE CR1 -199 1378 996 2132 185 42 5 chr12 38444450 38444856 -105341599 - MSTA LTR MaLR -7 421 1 201 394 0 0 chr12 38444864 38444935 -105341520 - L3 LINE CR1 -597 980 910 1367 204 0 29 chr12 38444952 38445232 -105341223 + L1M3e LINE L1 1 272 -6758 2259 242 82 49 chr12 38445232 38447015 -105339440 + L1M3e LINE L1 1028 2894 -4213 1857 110 4 4 chr12 38447009 38447281 -105339174 - THE1B-int LTR MaLR -1308 272 1 * 2406 79 54 23 chr12 38447281 38447634 -105338821 - THE1B LTR MaLR 0 364 1 557 156 11 6 chr12 38447800 38447900 -105338555 + MER5A DNA MER1_type 82 189 0 4623 142 3 0 chr12 38448008 38448713 -105337742 + L1P LINE L1 3 709 -5437 3443 119 2 6 chr12 38449230 38449744 -105336711 - MER75 DNA T2_type -2 512 1 327 266 180 30 chr12 38449865 38450000 -105336455 - MIR3 SINE MIR -14 194 45 6098 194 26 27 chr12 38450124 38450174 -105336281 - L1PA16 LINE L1 -9 6157 6108 1468 224 0 19 chr12 38450174 38450482 -105335973 - AluJb SINE Alu -8 304 3 6098 194 26 27 chr12 38450482 38452252 -105334203 - L1PA16 LINE L1 -58 6108 4338 1246 230 10 32 chr12 38452252 38452561 -105333894 + AluJb SINE Alu 1 302 -10 6098 194 26 27 chr12 38452561 38453203 -105333252 - L1PA16 LINE L1 -1828 4338 3697 1809 61 4 0 chr12 38453276 38453507 -105332948 - MER75 DNA T2_type -2 512 281 1268 204 54 36 chr12 38453523 38453857 -105332598 - L1PA16 LINE L1 -2486 3660 3321 232 279 25 13 chr12 38454303 38454382 -105332073 + LTR33A LTR ERVL 444 523 0 838 303 39 21 chr12 38455349 38455679 -105330776 + LTR16B LTR ERVL 125 460 -4 894 338 43 36 chr12 38455719 38456461 -105329994 + HERV16 LTR ERVL 61 834 -4162 5052 75 11 40 chr12 38456461 38457169 -105329286 + LTR12 LTR ERV1 1 688 0 894 338 43 36 chr12 38457169 38457395 -105329060 + HERV16 LTR ERVL 834 1057 -3939 272 67 0 0 chr12 38457687 38457732 -105328723 + AluSc SINE Alu 255 299 0 3170 214 124 34 chr12 38457944 38458920 -105327535 + L1M1 LINE L1 1 1064 -6145 * 7770 160 34 36 chr12 38458913 38460912 -105325543 + L1M1 LINE L1 4678 6680 -685 1038 224 28 86 chr12 38461346 38461743 -105324712 + MLT1A2 LTR MaLR 1 374 0 782 214 7 87 chr12 38462074 38462371 -105324084 + MLT1B LTR MaLR 104 386 0 551 272 5 5 chr12 38462861 38463045 -105323410 + L1MC/D LINE L1 5188 5371 -775 * 6658 91 8 0 chr12 38463041 38463964 -105322491 - L1PA7 LINE L1 -1116 5030 4101 6407 74 17 6 chr12 38463966 38465055 -105321400 + L1PA7 LINE L1 5041 6141 -13 534 77 0 0 chr12 38465059 38465137 -105321318 + L1MC/D LINE L1 5354 5431 -902 835 288 64 47 chr12 38465348 38465817 -105320638 - LTR33 LTR ERVL -3 518 42 2224 111 0 3 chr12 38465939 38466236 -105320219 + AluY SINE Alu 1 296 -15 619 190 0 11 chr12 38466462 38466641 -105319814 + GA-rich Low_complexity Low_complexity 1 177 0 27 0 0 0 chr12 38467704 38467731 -105318724 + AT_rich Low_complexity Low_complexity 1 27 0 236 344 38 75 chr12 38468340 38468526 -105317929 - MIR3 SINE MIR -14 194 16 339 25 0 0 chr12 38468973 38469013 -105317442 + (CA)n Simple_repeat Simple_repeat 2 41 0 297 210 48 0 chr12 38469013 38469075 -105317380 - HERVL68 LTR ERVL -338 2699 2635 634 235 170 26 chr12 38469148 38469378 -105317077 - HERVL68 LTR ERVL -484 2553 2291 269 285 139 32 chr12 38469893 38470051 -105316404 - MIR SINE MIR -40 222 48 229 332 35 73 chr12 38470942 38471201 -105315254 - MIR SINE MIR 0 262 14 663 244 99 23 chr12 38471340 38471561 -105314894 + L1ME1 LINE L1 36 273 -6123 1335 257 82 6 chr12 38471600 38472098 -105314357 + L1ME1 LINE L1 4707 5242 -973 595 116 0 0 chr12 38472110 38472196 -105314259 - HY3 scRNA scRNA -3 98 13 2630 231 67 38 chr12 38472235 38473174 -105313281 + L1ME1 LINE L1 5284 6231 -4 7606 23 5 0 chr12 38473199 38474068 -105312387 - L1P LINE L1 -1168 4978 4106 * 7615 32 1 0 chr12 38474067 38475151 -105311304 + L1PA3 LINE L1 5098 6182 0 21 57 0 0 chr12 38475604 38475639 -105310816 + AT_rich Low_complexity Low_complexity 1 35 0 1655 209 69 3 chr12 38476783 38476992 -105309463 - MLT1B LTR MaLR 0 390 147 1341 173 85 35 chr12 38476992 38477167 -105309288 - AluJo SINE Alu -15 297 101 441 0 0 0 chr12 38477167 38477216 -105309239 + (TG)n Simple_repeat Simple_repeat 2 50 0 1341 173 85 35 chr12 38477216 38477323 -105309132 - AluJo SINE Alu -211 101 1 1655 209 69 3 chr12 38477323 38477461 -105308994 - MLT1B LTR MaLR -243 147 20 1148 137 19 16 chr12 38477461 38477706 -105308749 + THE1C LTR MaLR 1 361 -14 372 183 15 131 chr12 38477806 38477943 -105308512 + MIR SINE MIR 126 246 -16 495 169 11 22 chr12 38479515 38479604 -105306851 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 38480372 38480393 -105306062 + AT_rich Low_complexity Low_complexity 1 21 0 50 95 0 0 chr12 38480604 38480752 -105305703 + AT_rich Low_complexity Low_complexity 1 148 0 612 82 0 0 chr12 38480858 38480943 -105305512 + Alu SINE Alu 225 309 -3 233 243 95 0 chr12 38480948 38481022 -105305433 - L1MC5 LINE L1 -404 7557 7477 23 0 0 0 chr12 38481167 38481190 -105305265 + AT_rich Low_complexity Low_complexity 1 23 0 294 336 143 0 chr12 38481228 38481347 -105305108 - L2 LINE L2 0 3272 3137 360 225 12 25 chr12 38482606 38482686 -105303769 - MIR SINE MIR -107 101 23 2417 57 0 27 chr12 38483799 38484100 -105302355 - AluY SINE Alu -18 293 1 2277 89 7 0 chr12 38484114 38484406 -105302049 - AluSp SINE Alu -19 294 1 366 23 0 0 chr12 38485399 38485442 -105301013 + (CA)n Simple_repeat Simple_repeat 2 44 0 310 283 22 43 chr12 38485816 38485954 -105300501 + L2 LINE L2 417 551 -2763 486 297 40 7 chr12 38485975 38486180 -105300275 + MIR SINE MIR 2 254 -8 2632 126 3 8 chr12 38486554 38486920 -105299535 + THE1B LTR MaLR 1 364 0 362 322 89 20 chr12 38487085 38487474 -105298981 + L1ME LINE L1 16 468 -5602 10258 44 2 128 chr12 38487883 38489455 -105297000 + SVA Other Other 9 1382 -4 985 292 19 39 chr12 38489817 38490228 -105296227 + L1 LINE L1 4857 5259 -887 1656 157 87 31 chr12 38490234 38490554 -105295901 + THE1C LTR MaLR 1 365 -63 2126 97 7 4 chr12 38490554 38490833 -105295622 + AluSg1 SINE Alu 2 281 -28 1656 157 87 31 chr12 38490833 38490901 -105295554 + THE1C LTR MaLR 365 428 0 663 100 118 9 chr12 38490929 38491039 -105295416 + L1MA2 LINE L1 6178 6299 -5 22 0 0 0 chr12 38491039 38491061 -105295394 + AT_rich Low_complexity Low_complexity 1 22 0 499 174 207 0 chr12 38491065 38491186 -105295269 - MER4B LTR ERV1 -462 148 3 1870 149 3 0 chr12 38491516 38491798 -105294657 + AluSx SINE Alu 3 285 -27 30 27 0 0 chr12 38491799 38491836 -105294619 + AT_rich Low_complexity Low_complexity 1 37 0 686 316 0 0 chr12 38492442 38492616 -105293839 + MER41D LTR ERV1 384 557 0 11798 303 50 31 chr12 38493561 38495517 -105290938 + PRIMA41-int LTR ERV1 1269 3187 -4569 2375 76 0 35 chr12 38495517 38495833 -105290622 - AluY SINE Alu -6 305 1 11798 303 50 31 chr12 38495833 38497090 -105289365 + PRIMA41-int LTR ERV1 3187 4419 -3337 2713 107 5 35 chr12 38497090 38497299 -105289156 - THE1B LTR MaLR 0 364 168 1925 115 4 0 chr12 38497299 38497583 -105288872 + AluSx SINE Alu 23 307 0 2713 107 5 35 chr12 38497583 38497747 -105288708 - THE1B LTR MaLR -196 168 1 11798 303 50 31 chr12 38497747 38499312 -105287143 + PRIMA41-int LTR ERV1 4419 6138 -1618 213 196 0 0 chr12 38499620 38499676 -105286779 + G-rich Low_complexity Low_complexity 4 59 0 351 297 22 22 chr12 38602676 38602814 -105183641 + L1ME1 LINE L1 138 275 -6121 941 163 0 0 chr12 38602815 38602962 -105183493 + HERVL LTR ERVL 1499 1645 -4119 839 243 24 67 chr12 38602963 38603336 -105183119 - MER57A LTR ERV1 -1 402 67 1130 196 100 0 chr12 38603406 38603626 -105182829 + HERVL LTR ERVL 3671 3912 -1742 3062 223 43 51 chr12 38603626 38604121 -105182334 + L1ME1 LINE L1 4249 4747 -1488 2181 102 0 3 chr12 38604121 38604415 -105182040 - AluSg1 SINE Alu -16 293 1 3062 223 43 51 chr12 38604415 38605741 -105180714 + L1ME1 LINE L1 4747 6043 -192 1820 304 48 41 chr12 38605840 38606738 -105179717 + HAL1 LINE L1 14 917 -1590 295 306 60 82 chr12 38606859 38607140 -105179315 - HAL1 LINE L1 -2125 382 108 732 288 35 11 chr12 38607459 38607698 -105178757 - MIR SINE MIR -9 253 13 255 282 5 146 chr12 38607698 38607904 -105178551 - MER5B DNA MER1_type 0 178 2 224 365 156 12 chr12 38608136 38608303 -105178152 + MIR SINE MIR 28 218 -44 894 239 109 10 chr12 38608419 38608712 -105177743 - HsTC2 DNA Tc2 -30 1868 1547 210 125 14 83 chr12 38608714 38608786 -105177669 + (TTAA)n Simple_repeat Simple_repeat 2 68 0 328 313 18 0 chr12 38608896 38609008 -105177447 - HsTC2 DNA Tc2 -1781 117 4 2656 153 2 2 chr12 38610543 38610969 -105175486 - MSTC LTR MaLR -2 426 1 204 327 0 0 chr12 38611121 38611176 -105175279 - MIR SINE MIR -138 70 16 2073 105 7 7 chr12 38611228 38611544 -105174911 - AluSp SINE Alu 0 316 1 810 168 0 29 chr12 38612172 38612309 -105174146 - FLAM_C SINE Alu 0 133 1 4253 16 2 0 chr12 38612500 38612991 -105173464 - L1PA2 LINE L1 -1 6154 5663 739 249 0 17 chr12 38614491 38614664 -105171791 + MER31B LTR ERV1 1 170 -296 21427 121 11 10 chr12 38614664 38618573 -105167882 + L1PA8A LINE L1 1894 5802 -329 24 0 0 0 chr12 38618752 38618776 -105167679 + AT_rich Low_complexity Low_complexity 1 24 0 1181 298 177 33 chr12 38619192 38619866 -105166589 - L3 LINE CR1 -4 1573 803 737 271 157 34 chr12 38619886 38620299 -105166156 + LTR16B LTR ERVL 1 464 0 293 352 41 25 chr12 38620303 38620499 -105165956 + HERV16 LTR ERVL 5 203 -4793 2772 319 78 31 chr12 38620571 38621681 -105164774 + HERV16 LTR ERVL 506 1562 -3535 207 0 0 0 chr12 38621681 38621704 -105164751 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2772 319 78 31 chr12 38621704 38623086 -105163369 + HERV16 LTR ERVL 1562 3197 -1900 259 298 35 48 chr12 38623140 38623368 -105163087 + HERV16 LTR ERVL 3569 3793 -1203 1244 220 51 71 chr12 38623370 38623724 -105162731 + MLT1A1 LTR MaLR 7 353 -12 238 222 14 42 chr12 38624011 38624083 -105162372 - HAL1b LINE L1 -925 423 354 2705 26 0 0 chr12 38624092 38624398 -105162057 + AluYa5 SINE Alu 1 306 -5 21 36 0 0 chr12 38624569 38624597 -105161858 + AT_rich Low_complexity Low_complexity 1 28 0 492 341 40 14 chr12 38625141 38625364 -105161091 - MLT1J LTR MaLR -262 249 21 200 194 48 0 chr12 38626307 38626369 -105160086 + (CTATT)n Simple_repeat Simple_repeat 4 68 0 519 299 66 49 chr12 38628010 38628254 -105158201 + MIR SINE MIR 15 262 0 23 0 0 0 chr12 38629350 38629373 -105157082 + AT_rich Low_complexity Low_complexity 1 23 0 2171 91 30 10 chr12 38629547 38629845 -105156610 - AluSg SINE Alu -6 304 1 28 0 0 0 chr12 38630932 38630960 -105155495 + AT_rich Low_complexity Low_complexity 1 28 0 377 339 61 6 chr12 38631928 38632108 -105154347 - L2 LINE L2 0 3313 3124 1650 286 80 10 chr12 38632113 38632712 -105153743 + L2 LINE L2 1430 2070 -1244 1156 294 51 40 chr12 38633336 38633789 -105152666 - MLT1J LTR MaLR -35 476 19 261 221 0 39 chr12 38633900 38633977 -105152478 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 267 225 50 0 chr12 38635042 38635162 -105151293 + (TA)n Simple_repeat Simple_repeat 1 126 0 3886 189 139 22 chr12 38636093 38637079 -105149376 + L1MB1 LINE L1 4134 5234 -912 1265 171 60 12 chr12 38637180 38637432 -105149023 + L1MB1 LINE L1 5748 6011 -157 2297 109 12 9 chr12 38637434 38637773 -105148682 + THE1A LTR MaLR 1 340 -15 814 133 67 0 chr12 38637776 38637926 -105148529 + L1MB1 LINE L1 6008 6167 -1 21 36 0 0 chr12 38637926 38637954 -105148501 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 38639182 38639221 -105147234 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 153 107 0 chr12 38640080 38640230 -105146225 + L1M4c LINE L1 1599 1764 -4620 378 0 0 0 chr12 38640326 38640368 -105146087 + (TG)n Simple_repeat Simple_repeat 2 43 0 232 268 0 28 chr12 38640369 38640440 -105146015 + GA-rich Low_complexity Low_complexity 1 69 0 518 132 0 11 chr12 38640716 38640807 -105145648 + L1M4c LINE L1 1748 1837 -4547 225 0 0 0 chr12 38640809 38640834 -105145621 + (TTA)n Simple_repeat Simple_repeat 1 25 0 846 283 178 2 chr12 38640943 38641382 -105145073 + HAL1 LINE L1 1402 1917 -590 366 282 126 16 chr12 38641825 38642080 -105144375 + HAL1 LINE L1 2109 2391 -116 1938 163 28 93 chr12 38642179 38642575 -105143880 + L1MB7 LINE L1 5706 6126 -52 1975 133 59 31 chr12 38642575 38642929 -105143526 + THE1B LTR MaLR 1 364 0 11374 107 2 4 chr12 38642929 38644513 -105141942 + THE1B-int LTR MaLR 1 1580 0 2054 125 62 28 chr12 38644513 38644865 -105141590 + THE1B LTR MaLR 1 364 0 1938 163 28 93 chr12 38644865 38644962 -105141493 + L1MB7 LINE L1 6123 6169 -9 205 214 101 45 chr12 38645560 38645649 -105140806 - L2 LINE L2 -917 2397 2304 208 354 0 25 chr12 38645946 38646025 -105140430 - MIR SINE MIR -67 141 65 262 301 97 19 chr12 38646183 38646286 -105140169 + MIR3 SINE MIR 83 193 -15 287 279 115 71 chr12 38647785 38647968 -105138487 - L2 LINE L2 0 3272 3082 341 322 147 23 chr12 38648004 38648181 -105138274 + MIR SINE MIR 39 237 -25 216 97 0 0 chr12 38648224 38648255 -105138200 + (TC)n Simple_repeat Simple_repeat 1 31 0 236 342 60 0 chr12 38648950 38649067 -105137388 + L2 LINE L2 3169 3292 -21 202 351 0 0 chr12 38649226 38649283 -105137172 + L2 LINE L2 3253 3309 -4 285 298 274 33 chr12 38649917 38650246 -105136209 - L2 LINE L2 0 3313 2906 224 211 55 9 chr12 38650732 38650841 -105135614 + (TA)n Simple_repeat Simple_repeat 2 115 0 333 47 0 0 chr12 38650891 38650934 -105135521 + (CA)n Simple_repeat Simple_repeat 2 44 0 298 310 116 103 chr12 38651014 38651343 -105135112 + L2 LINE L2 2936 3268 -4 225 345 103 14 chr12 38652750 38652895 -105133560 - MIR SINE MIR 0 262 105 194 240 0 40 chr12 38652900 38652950 -105133505 + MIR SINE MIR 197 244 -18 681 231 46 136 chr12 38653265 38653654 -105132801 + L2 LINE L2 2440 2793 -521 707 246 52 129 chr12 38653654 38654159 -105132296 - MLT1H LTR MaLR 0 549 84 376 299 138 51 chr12 38654191 38654546 -105131909 + L2 LINE L2 2804 3189 -124 1668 130 0 0 chr12 38654567 38654814 -105131641 - L1PA8A LINE L1 -4 6127 5881 57 28 0 0 chr12 38654986 38655057 -105131398 + AT_rich Low_complexity Low_complexity 1 71 0 335 306 48 93 chr12 38655068 38655441 -105131014 + L2 LINE L2 2698 3050 -263 25 51 0 0 chr12 38655471 38655510 -105130945 + AT_rich Low_complexity Low_complexity 1 39 0 211 296 136 0 chr12 38656427 38656508 -105129947 + L2 LINE L2 3168 3259 -13 2111 97 0 24 chr12 38657542 38657854 -105128601 + AluSg SINE Alu 1 305 0 440 324 74 0 chr12 38659034 38659210 -105127245 + MIR SINE MIR 66 254 -8 551 264 75 51 chr12 38659652 38659947 -105126508 - L1ME LINE L1 -335 5786 5485 249 342 158 43 chr12 38659954 38660232 -105126223 - L2 LINE L2 -2 3311 3002 286 247 12 0 chr12 38660835 38660916 -105125539 - HAL1 LINE L1 -867 1640 1559 185 314 121 48 chr12 38660959 38661166 -105125289 - MIR SINE MIR -1 261 40 226 304 80 24 chr12 38661363 38661652 -105124803 - L1MEd LINE L1 -4894 1225 921 1177 149 62 12 chr12 38661694 38661935 -105124520 - L1MD3 LINE L1 0 7995 7743 399 21 0 0 chr12 38662769 38662817 -105123638 + (TG)n Simple_repeat Simple_repeat 2 49 0 219 290 0 0 chr12 38663306 38663368 -105123087 - L2 LINE L2 0 3313 3252 257 140 80 0 chr12 38663671 38663721 -105122734 - MADE1 DNA Mariner -26 54 1 21 0 0 0 chr12 38663820 38663841 -105122614 + AT_rich Low_complexity Low_complexity 1 21 0 777 163 31 0 chr12 38664719 38664848 -105121607 + FRAM SINE Alu 28 160 -16 4643 153 9 18 chr12 38664977 38666385 -105120070 - L1PA16 LINE L1 -1 6165 4779 229 250 19 0 chr12 38666406 38666458 -105119997 - MER66A LTR ERV1 -140 338 286 320 114 0 0 chr12 38666458 38666502 -105119953 - L1PA16 LINE L1 -1373 4773 4730 300 265 20 41 chr12 38667417 38667515 -105118940 + HERV16 LTR ERVL 4296 4391 -605 1136 282 81 18 chr12 38668197 38668580 -105117875 + LTR16B LTR ERVL 15 421 -43 377 182 0 0 chr12 38668613 38668679 -105117776 - MADE1 DNA Mariner -14 66 1 290 350 95 20 chr12 38668813 38669013 -105117442 - L3 LINE CR1 -1023 554 340 279 0 0 0 chr12 38669075 38669106 -105117349 + (TA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr12 38669337 38669366 -105117089 + AT_rich Low_complexity Low_complexity 1 29 0 * 478 302 42 4 chr12 38669360 38669939 -105116516 - L1MC4a LINE L1 -545 5638 5269 324 364 98 16 chr12 38670003 38670379 -105116076 - L1MC4a LINE L1 -982 5164 4758 19212 163 43 32 chr12 38670402 38674339 -105112116 + L1MA1 LINE L1 16 3994 -3571 2266 115 0 0 chr12 38674339 38674644 -105111811 + AluSg SINE Alu 4 308 -2 19212 163 43 32 chr12 38674644 38674825 -105111630 + L1MA1 LINE L1 3994 4172 -3393 2457 18 0 3 chr12 38674828 38675113 -105111342 - L1PA3 LINE L1 0 6155 5872 5609 16 5 0 chr12 38675136 38675903 -105110552 + L1PA3 LINE L1 5123 5898 -257 12308 156 32 9 chr12 38675911 38679382 -105107073 + L1MA1 LINE L1 4177 7721 0 366 291 106 57 chr12 38679430 38679942 -105106513 - L1M4 LINE L1 -1438 4708 4172 21 0 0 0 chr12 38680102 38680123 -105106332 + AT_rich Low_complexity Low_complexity 1 21 0 2082 102 0 11 chr12 38680222 38680553 -105105902 - AluSc SINE Alu 0 328 1 471 244 116 86 chr12 38680996 38681532 -105104923 - L1M4 LINE L1 -2919 3227 2676 314 331 105 6 chr12 38681767 38681948 -105104507 - L1M4 LINE L1 -3613 2533 2335 6214 88 8 4 chr12 38681996 38682985 -105103470 - L1PA10 LINE L1 -2 6166 5169 529 140 0 0 chr12 38683158 38683251 -105103204 - L1MB5 LINE L1 -1 6173 6081 907 20 0 0 chr12 38683456 38683558 -105102897 - AluY SINE Alu -208 102 1 4926 234 98 19 chr12 38683559 38685371 -105101084 + L1M4c LINE L1 1925 3593 -2789 1655 186 99 14 chr12 38685371 38685736 -105100719 - MSTD LTR MaLR 0 396 1 4926 234 98 19 chr12 38685736 38686293 -105100162 + L1M4c LINE L1 3593 4510 -1872 2117 136 0 13 chr12 38686293 38686609 -105099846 + AluSx SINE Alu 1 312 0 4926 234 98 19 chr12 38686609 38686691 -105099764 + L1M4c LINE L1 4510 4584 -1798 426 194 70 23 chr12 38686677 38686806 -105099649 + L1M4c LINE L1 2759 2893 -3489 * 416 198 9 0 chr12 38686807 38686913 -105099542 + L1M4c LINE L1 4581 4687 -1695 2714 204 42 4 chr12 38686913 38686993 -105099462 - MER44D DNA MER2_type -1882 605 529 288 0 0 0 chr12 38686993 38687025 -105099430 + (CA)n Simple_repeat Simple_repeat 2 33 0 2714 204 42 4 chr12 38687025 38687472 -105098983 - MER44D DNA MER2_type -1958 529 3 738 169 12 36 chr12 38687473 38687639 -105098816 + L1M4c LINE L1 4685 4846 -1536 2012 181 5 10 chr12 38687803 38688211 -105098244 - L1PA13 LINE L1 -1316 4830 4425 6060 102 13 11 chr12 38688215 38689549 -105096906 + L1PA13 LINE L1 4827 6163 0 2223 116 6 0 chr12 38689557 38689868 -105096587 + AluSq SINE Alu 1 313 0 471 293 39 31 chr12 38689868 38690206 -105096249 + L1ME LINE L1 1012 1391 -4981 543 275 77 91 chr12 38690267 38690696 -105095759 - L1MEd LINE L1 -1133 1357 922 266 143 0 0 chr12 38691725 38691767 -105094688 - MADE1 DNA Mariner -34 46 5 1929 166 7 0 chr12 38691902 38692197 -105094258 + AluSx SINE Alu 1 297 -15 201 39 0 0 chr12 38692199 38692225 -105094230 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2362 179 34 2 chr12 38692850 38693263 -105093192 + MSTB LTR MaLR 1 426 0 1887 131 40 37 chr12 38693978 38694352 -105092103 + THE1C LTR MaLR 1 375 0 1972 180 30 93 chr12 38694516 38694768 -105091687 - MLT1D LTR MaLR 0 505 303 1738 180 0 44 chr12 38694768 38694905 -105091550 + AluJb SINE Alu 1 143 -169 2004 142 7 3 chr12 38694905 38695215 -105091240 + AluSx SINE Alu 1 311 -1 1738 180 0 44 chr12 38695215 38695394 -105091061 + AluJb SINE Alu 143 303 -9 1972 180 30 93 chr12 38695394 38695680 -105090775 - MLT1D LTR MaLR -202 303 1 460 26 0 117 chr12 38696060 38696137 -105090318 - L1PA4 LINE L1 -3 6152 6085 746 93 9 0 chr12 38696137 38696245 -105090210 + L1PA4 LINE L1 5979 6087 -68 969 227 86 36 chr12 38696588 38696937 -105089518 + MSTD LTR MaLR 1 396 0 248 280 120 16 chr12 38697364 38697489 -105088966 - MLT1J LTR MaLR -44 467 330 554 299 6 19 chr12 38697559 38697716 -105088739 - MLT1J LTR MaLR -325 186 32 246 303 56 107 chr12 38697727 38697905 -105088550 - MER5B DNA MER1_type -9 169 1 410 202 168 42 chr12 38698166 38698285 -105088170 - MSTD LTR MaLR -86 310 177 1772 159 63 29 chr12 38699759 38700137 -105086318 + L1MA10 LINE L1 5938 6328 -6 23 33 0 0 chr12 38700604 38700634 -105085821 + AT_rich Low_complexity Low_complexity 1 30 0 383 253 123 7 chr12 38700869 38701015 -105085440 + L1MC/D LINE L1 5625 5787 -2021 7570 26 6 1 chr12 38701206 38702852 -105083603 + L1PA4 LINE L1 4504 6153 -2 23 0 0 0 chr12 38703166 38703189 -105083266 + AT_rich Low_complexity Low_complexity 1 23 0 269 375 0 0 chr12 38703389 38703477 -105082978 - MIR3 SINE MIR -7 201 114 903 280 40 20 chr12 38703757 38704007 -105082448 + MIR SINE MIR 8 262 0 257 367 56 10 chr12 38704077 38704273 -105082182 + L2 LINE L2 2600 2804 -510 28 29 0 0 chr12 38704497 38704532 -105081923 + AT_rich Low_complexity Low_complexity 1 35 0 225 313 40 30 chr12 38704684 38704783 -105081672 + L2 LINE L2 2244 2343 -971 337 342 77 78 chr12 38704811 38705576 -105080879 + L2 LINE L2 2420 3191 -81 3151 21 0 11 chr12 38706091 38706456 -105079999 - L1PA3 LINE L1 -1489 4657 4295 7770 20 0 1 chr12 38706456 38707971 -105078484 + L1PA3 LINE L1 4639 6155 0 3151 21 0 11 chr12 38707971 38707986 -105078469 - L1P LINE L1 -1851 4295 4281 413 288 7 41 chr12 38708712 38708858 -105077597 + L2 LINE L2 3172 3312 -1 2290 156 22 0 chr12 38709224 38709589 -105076866 - MER57A LTR ERV1 -30 373 1 985 109 0 0 chr12 38709589 38709726 -105076729 - MER57A-int LTR ERV1 0 7537 7401 2857 144 20 7 chr12 38709731 38710188 -105076267 + MER57-int LTR ERV1 6684 7146 -391 697 87 39 39 chr12 38710190 38710317 -105076138 + LTR54B LTR ERV1 5 131 -367 566 144 0 0 chr12 38710318 38710408 -105076047 + MER57-int LTR ERV1 7284 7373 -164 23 33 0 0 chr12 38710594 38710624 -105075831 + AT_rich Low_complexity Low_complexity 1 30 0 309 68 0 0 chr12 38711281 38711325 -105075130 + (TG)n Simple_repeat Simple_repeat 2 45 0 243 341 88 43 chr12 38711411 38711739 -105074716 - L2 LINE L2 -537 2777 2435 207 356 34 41 chr12 38712907 38713053 -105073402 - L2 LINE L2 -455 2859 2715 192 152 0 0 chr12 38713259 38713292 -105073163 + GA-rich Low_complexity Low_complexity 4 36 0 195 167 0 0 chr12 38713863 38713905 -105072550 + T-rich Low_complexity Low_complexity 3 44 0 511 170 9 18 chr12 38714533 38714645 -105071810 - L1MB8 LINE L1 -13 6165 6055 24 53 0 0 chr12 38715017 38715055 -105071400 + AT_rich Low_complexity Low_complexity 1 38 0 327 349 42 11 chr12 38715380 38715569 -105070886 + L2 LINE L2 2827 3021 -292 1428 169 51 79 chr12 38715607 38715822 -105070633 - THE1C LTR MaLR 0 375 172 2341 88 0 10 chr12 38715822 38716118 -105070337 - AluY SINE Alu -17 294 2 1428 169 51 79 chr12 38716118 38716257 -105070198 - THE1C LTR MaLR -203 172 31 3313 134 43 8 chr12 38716257 38716764 -105069691 + LTR17 LTR ERV1 256 780 0 14456 87 21 11 chr12 38716766 38718753 -105067702 + HERV17 LTR ERV1 1 2007 -6619 8032 61 1 3 chr12 38718745 38719754 -105066701 + HERV17 LTR ERV1 2430 3436 -5190 * 5784 87 4 3 chr12 38719855 38720627 -105065828 + HERV17 LTR ERV1 2982 3754 -4872 5052 44 8 0 chr12 38720606 38721219 -105065236 + HERV17 LTR ERV1 5405 6022 -2604 * 276 77 0 0 chr12 38721209 38721248 -105065207 + HERV17 LTR ERV1 7510 7548 -1078 * 2339 58 0 10 chr12 38721238 38721533 -105064922 + HERV17 LTR ERV1 8335 8626 0 2350 91 0 12 chr12 38721533 38721863 -105064592 + LTR17 LTR ERV1 1 326 -454 247 118 0 0 chr12 38721878 38721912 -105064543 - THE1C LTR MaLR -341 34 1 2557 111 3 22 chr12 38722071 38722442 -105064013 + THE1B LTR MaLR 1 364 0 246 310 39 70 chr12 38722462 38722591 -105063864 - L3 LINE CR1 -79 1498 1374 431 63 0 4 chr12 38722593 38722816 -105063639 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 38722816 38722838 -105063617 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 313 100 12 chr12 38722838 38722918 -105063537 - L3 LINE CR1 -203 1374 1288 1252 119 10 15 chr12 38723054 38723255 -105063200 - L1PA16 LINE L1 -3 6163 5964 1497 185 45 31 chr12 38723744 38724036 -105062419 + AluJb SINE Alu 1 296 -16 354 303 76 15 chr12 38724099 38724231 -105062224 - L2 LINE L2 0 3272 3133 352 119 0 0 chr12 38724282 38724341 -105062114 + MER53 DNA DNA 128 186 -3 1373 265 59 10 chr12 38724644 38725153 -105061302 + L1ME3A LINE L1 5633 6166 -4 419 263 69 40 chr12 38725728 38725903 -105060552 + LTR16C LTR ERVL 311 490 -1 201 39 0 0 chr12 38727158 38727184 -105059271 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 364 320 48 84 chr12 38727571 38727905 -105058550 - L2 LINE L2 0 3272 2951 236 182 30 61 chr12 38731398 38731464 -105054991 + MER5B DNA MER1_type 1 64 -114 181 260 0 20 chr12 38733948 38733998 -105052457 + L3 LINE CR1 1216 1264 -313 2331 99 3 0 chr12 38734554 38734856 -105051599 + AluSx SINE Alu 1 303 -9 203 207 121 0 chr12 38735049 38735107 -105051348 + MIR SINE MIR 102 166 -96 436 92 0 103 chr12 38735427 38735514 -105050941 + MADE1 DNA Mariner 1 78 -2 229 211 0 0 chr12 38736401 38736453 -105050002 + A-rich Low_complexity Low_complexity 1 52 0 466 284 17 9 chr12 38736869 38736985 -105049470 + MIR SINE MIR 25 141 -121 389 214 45 0 chr12 38736989 38737078 -105049377 + L1 LINE L1 3525 3617 -2529 319 298 69 0 chr12 38737078 38737209 -105049246 + BaEV-int LTR ERV1 150 289 -6360 21188 159 152 18 chr12 38737230 38740105 -105046350 + L1MA5 LINE L1 11 2501 -3799 8194 56 18 0 chr12 38740105 38741924 -105044531 + L1PA6 LINE L1 4307 6146 -8 21188 159 152 18 chr12 38741924 38744586 -105041869 + L1MA5 LINE L1 2501 6300 0 213 145 145 29 chr12 38744587 38744656 -105041799 + MIR SINE MIR 144 220 -42 407 284 128 25 chr12 38746304 38746508 -105039947 - MIR SINE MIR -1 261 37 317 306 42 76 chr12 38746585 38746729 -105039726 + MIR SINE MIR 1 139 -123 507 281 127 5 chr12 38747090 38747311 -105039144 + MIR SINE MIR 1 248 -14 2269 102 0 3 chr12 38748111 38748415 -105038040 - AluSq SINE Alu -8 305 3 2255 83 7 17 chr12 38749088 38749390 -105037065 + AluY SINE Alu 3 301 -10 23 0 0 0 chr12 38749567 38749590 -105036865 + AT_rich Low_complexity Low_complexity 1 23 0 3575 112 54 4 chr12 38749868 38750420 -105036035 + LTR19B LTR ERV1 1 580 0 231 114 0 0 chr12 38751588 38751623 -105034832 + (CA)n Simple_repeat Simple_repeat 1 35 0 1926 105 60 78 chr12 38753265 38753647 -105032808 + THE1C LTR MaLR 1 375 0 1856 156 16 10 chr12 38756156 38756463 -105029992 + AluJo SINE Alu 1 309 -3 197 323 46 0 chr12 38757188 38757253 -105029202 - L2 LINE L2 0 3313 3246 24 32 0 0 chr12 38757552 38757583 -105028872 + AT_rich Low_complexity Low_complexity 1 31 0 235 380 40 0 chr12 38758181 38758331 -105028124 + MIR SINE MIR 58 213 -49 505 176 37 0 chr12 38758376 38758484 -105027971 + L1MB5 LINE L1 6055 6166 -8 33 25 0 0 chr12 38760118 38760158 -105026297 + AT_rich Low_complexity Low_complexity 1 40 0 366 290 213 7 chr12 38760878 38761033 -105025422 + MIR SINE MIR 32 218 -44 1347 168 91 64 chr12 38761886 38762184 -105024271 + MLT2C1 LTR ERVL 92 397 0 1950 144 3 0 chr12 38762258 38762550 -105023905 + AluSx SINE Alu 1 293 -19 2076 111 0 0 chr12 38762595 38762866 -105023589 + AluSx SINE Alu 1 271 -41 23 33 0 0 chr12 38763648 38763678 -105022777 + AT_rich Low_complexity Low_complexity 1 30 0 214 352 112 19 chr12 38764207 38764474 -105021981 + L3 LINE CR1 160 451 -1126 352 247 52 0 chr12 38764554 38764651 -105021804 - MER112 DNA MER1_type -9 251 150 23 33 0 0 chr12 38764734 38764764 -105021691 + AT_rich Low_complexity Low_complexity 1 30 0 425 268 58 0 chr12 38766292 38766430 -105020025 + L1ME4a LINE L1 5974 6119 -2 2418 193 92 31 chr12 38766820 38767343 -105019112 - MLT1F1 LTR MaLR 0 567 13 615 268 108 17 chr12 38767437 38767668 -105018787 - MIR SINE MIR -4 258 7 2110 138 0 3 chr12 38767690 38768002 -105018453 - AluSx SINE Alu -1 311 1 2789 104 65 5 chr12 38768822 38768919 -105017536 + L1PB1 LINE L1 5682 5772 -379 216 0 0 0 chr12 38768919 38768943 -105017512 + (TG)n Simple_repeat Simple_repeat 2 25 0 2789 104 65 5 chr12 38768943 38769288 -105017167 + L1PB1 LINE L1 5772 6151 0 191 371 0 0 chr12 38769846 38769908 -105016547 - L2 LINE L2 -1 3271 3210 316 266 47 148 chr12 38771509 38771765 -105014690 + MIR SINE MIR 14 243 -19 1092 212 180 6 chr12 38771973 38772284 -105014171 - MLT1A1 LTR MaLR 0 365 1 1984 151 10 0 chr12 38772331 38772636 -105013819 + AluSx SINE Alu 2 309 -3 827 181 107 23 chr12 38772676 38772892 -105013563 - MER46A DNA MER2_type 0 236 3 936 290 22 74 chr12 38773076 38773441 -105013014 + MLT1H1 LTR MaLR 3 348 -207 661 306 29 15 chr12 38773543 38773749 -105012706 + MLT1H1 LTR MaLR 382 590 0 2521 205 12 2 chr12 38775386 38775893 -105010562 + MER67D LTR ERV1 3 514 0 1693 148 4 11 chr12 38775993 38776293 -105010162 + AluJb SINE Alu 16 313 0 3740 193 44 53 chr12 38777019 38777084 -105009371 - L1MB8 LINE L1 -1 6177 6113 1857 139 0 14 chr12 38777084 38777395 -105009060 + AluJb SINE Alu 1 307 0 3740 193 44 53 chr12 38777395 38777940 -105008515 - L1MB8 LINE L1 -65 6113 5564 2253 167 65 2 chr12 38777940 38778341 -105008114 + MSTB LTR MaLR 1 426 0 3740 193 44 53 chr12 38778341 38779467 -105006988 - L1MB8 LINE L1 -614 5564 4465 312 258 11 0 chr12 38779775 38779864 -105006591 - L1MC4a LINE L1 -1907 5901 5812 278 315 90 40 chr12 38779909 38780109 -105006346 - L1MC4a LINE L1 -1979 5829 5620 * 2582 243 135 30 chr12 38780108 38780555 -105005900 - L1MB8 LINE L1 -1716 4430 4032 2002 104 45 3 chr12 38780555 38780843 -105005612 - AluSg SINE Alu -10 300 1 2582 243 135 30 chr12 38780843 38780975 -105005480 - L1MB8 LINE L1 -2114 4032 3915 2726 99 0 3 chr12 38780975 38781340 -105005115 + THE1B LTR MaLR 1 364 0 2582 243 135 30 chr12 38781340 38781668 -105004787 - L1MB8 LINE L1 -2231 3915 3426 2052 130 7 7 chr12 38781790 38782112 -105004343 - AluSx SINE Alu 0 312 1 341 354 66 22 chr12 38782206 38782387 -105004068 + MIR3 SINE MIR 17 205 -3 22 0 0 0 chr12 38782708 38782730 -105003725 + AT_rich Low_complexity Low_complexity 1 22 0 2076 213 32 4 chr12 38783718 38784221 -105002234 + L1 LINE L1 3932 4448 -1698 2050 159 19 8 chr12 38784222 38784592 -105001863 + L1PA16 LINE L1 5791 6164 -2 288 111 0 0 chr12 38784671 38784716 -105001739 + (TG)n Simple_repeat Simple_repeat 2 46 0 1565 181 36 0 chr12 38784769 38785046 -105001409 - MER47B DNA MER2_type -1 417 131 336 48 0 0 chr12 38785140 38785182 -105001273 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 38785422 38785443 -105001012 + AT_rich Low_complexity Low_complexity 1 21 0 222 293 123 19 chr12 38786029 38786135 -105000320 + MIR3 SINE MIR 2 118 -90 227 163 47 47 chr12 38786195 38786281 -105000174 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 258 347 90 0 chr12 38786289 38786433 -105000022 - MIR SINE MIR -57 205 49 22 80 0 0 chr12 38786858 38786908 -104999547 + AT_rich Low_complexity Low_complexity 1 50 0 1512 208 3 7 chr12 38787354 38787652 -104998803 + AluJo SINE Alu 4 300 -12 236 137 20 0 chr12 38787777 38787828 -104998627 + GA-rich Low_complexity Low_complexity 4 55 0 298 297 40 20 chr12 38788185 38788286 -104998169 - L2 LINE L2 -9 3263 3161 190 283 192 10 chr12 38789789 38789888 -104996567 + MIR SINE MIR 67 183 -79 293 311 142 23 chr12 38790685 38790904 -104995551 + MIR SINE MIR 9 253 -9 595 272 31 0 chr12 38791041 38791203 -104995252 + MER97c DNA MER1_type? 2 168 -922 2337 86 0 0 chr12 38791780 38792082 -104994373 - AluSq SINE Alu -11 302 1 1477 187 10 33 chr12 38792519 38792824 -104993631 - AluJo SINE Alu -12 300 3 358 270 251 18 chr12 38793314 38793477 -104992978 - MIR SINE MIR -58 204 4 22 0 0 0 chr12 38794018 38794040 -104992415 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 38794697 38794728 -104991727 + AT_rich Low_complexity Low_complexity 1 31 0 6771 174 12 7 chr12 38795785 38797743 -104988712 + L1PB2 LINE L1 3816 5788 -363 270 0 0 0 chr12 38797743 38797773 -104988682 + (TA)n Simple_repeat Simple_repeat 1 30 0 6771 174 12 7 chr12 38797773 38798134 -104988321 + L1PB2 LINE L1 5788 6146 -5 288 308 0 19 chr12 38798939 38799046 -104987409 + L1ME2 LINE L1 5574 5678 -2130 335 269 75 55 chr12 38799059 38799260 -104987195 + L1ME2 LINE L1 5674 5878 -286 1770 128 80 3 chr12 38799635 38799923 -104986532 + AluSx SINE Alu 1 310 -2 617 71 24 0 chr12 38800308 38800392 -104986063 - AluY SINE Alu -19 292 207 1354 213 23 46 chr12 38800986 38801376 -104985079 + MER52A LTR ERV1 1 381 -1374 4260 227 62 8 chr12 38801401 38802457 -104983998 + MER52A LTR ERV1 644 1755 0 2048 124 26 59 chr12 38803061 38803449 -104983006 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr12 38805117 38805152 -104981303 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 38805986 38806007 -104980448 + AT_rich Low_complexity Low_complexity 1 21 0 1015 151 4 3 chr12 38806198 38806459 -104979996 - MER1B DNA MER1_type 0 339 1 4617 234 78 58 chr12 38807363 38807676 -104978779 + L1M4 LINE L1 14 319 -6223 785 127 0 0 chr12 38807676 38807802 -104978653 + L1MA6 LINE L1 6175 6300 0 4617 234 78 58 chr12 38807802 38809041 -104977414 + L1M4 LINE L1 319 1597 -4945 318 277 0 12 chr12 38809768 38809851 -104976604 + L2 LINE L2 3191 3272 0 204 224 20 0 chr12 38810037 38810086 -104976369 + L2 LINE L2 3261 3310 -3 30 45 0 0 chr12 38810773 38810817 -104975638 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr12 38811048 38811077 -104975378 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 38813859 38813888 -104972567 + AT_rich Low_complexity Low_complexity 1 29 0 182 288 55 14 chr12 38814914 38814987 -104971468 + MIR SINE MIR 75 150 -112 21 36 0 0 chr12 38816189 38816217 -104970238 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr12 38816462 38816507 -104969948 + AT_rich Low_complexity Low_complexity 1 45 0 194 91 30 0 chr12 38816525 38816558 -104969897 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 38816617 38816639 -104969816 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr12 38816826 38816866 -104969589 + AT_rich Low_complexity Low_complexity 1 40 0 1917 158 7 0 chr12 38819116 38819426 -104967029 - AluJb SINE Alu 0 312 1 7173 33 10 0 chr12 38820422 38821294 -104965161 - L1PA5 LINE L1 -1703 4443 3563 7589 40 0 7 chr12 38821294 38823027 -104963428 + L1PA5 LINE L1 4439 6175 0 188 382 0 0 chr12 38825789 38825844 -104960611 + L2 LINE L2 3209 3263 -9 1734 151 11 7 chr12 38825868 38826152 -104960303 - AluJo SINE Alu -23 289 5 281 279 124 56 chr12 38826195 38826356 -104960099 + MER5A DNA MER1_type 18 189 0 834 184 159 18 chr12 38827941 38828224 -104958231 + MER33 DNA MER1_type 1 323 -1 2198 106 7 0 chr12 38828321 38828622 -104957833 - AluSx SINE Alu -6 306 4 637 252 122 40 chr12 38828634 38828812 -104957643 - L1ME LINE L1 -305 5816 5654 1999 60 0 12 chr12 38828812 38829063 -104957392 - AluY SINE Alu -9 302 55 637 252 122 40 chr12 38829063 38829213 -104957242 - L1ME LINE L1 -467 5654 5461 2259 109 19 30 chr12 38829315 38829683 -104956772 + THE1B LTR MaLR 1 364 0 10639 100 40 2 chr12 38829684 38831205 -104955250 + THE1B-int LTR MaLR 2 1580 0 2131 113 51 25 chr12 38831205 38831560 -104954895 + THE1B LTR MaLR 1 364 0 329 95 0 0 chr12 38831566 38831608 -104954847 + THE1A LTR MaLR 312 353 -2 25 0 0 0 chr12 38832008 38832033 -104954422 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr12 38833143 38833170 -104953285 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 13 chr12 38833484 38833782 -104952673 + AluSx SINE Alu 1 294 -18 1836 144 44 9 chr12 38833966 38834286 -104952169 + MER44D DNA MER2_type 9 609 0 26 50 0 0 chr12 38834733 38834773 -104951682 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 38834856 38834877 -104951578 + AT_rich Low_complexity Low_complexity 1 21 0 2677 17 0 0 chr12 38836073 38836373 -104950082 + AluYa5 SINE Alu 1 300 -11 1187 179 0 14 chr12 38836667 38836885 -104949570 - AluJo SINE Alu -12 300 86 1362 188 46 10 chr12 38837117 38837420 -104949035 + MER33 DNA MER1_type 10 323 -1 29 78 0 0 chr12 38837767 38837831 -104948624 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr12 38838462 38838484 -104947971 + (TC)n Simple_repeat Simple_repeat 2 23 0 776 276 79 9 chr12 38838826 38839054 -104947401 + MIR SINE MIR 6 249 -13 1584 90 34 0 chr12 38839333 38839567 -104946888 + MER75B DNA T2_type 2 243 0 195 129 0 0 chr12 38840748 38840779 -104945676 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 783 242 11 22 chr12 38841518 38841700 -104944755 - MER5A DNA MER1_type 0 189 10 21 0 0 0 chr12 38842251 38842272 -104944183 + AT_rich Low_complexity Low_complexity 1 21 0 1281 269 120 62 chr12 38842809 38843167 -104943288 - L2 LINE L2 -1373 1941 1605 1993 128 13 0 chr12 38843167 38843471 -104942984 - AluSg SINE Alu -2 308 1 1281 269 120 62 chr12 38843471 38843837 -104942618 - L2 LINE L2 -1709 1605 1175 2727 23 0 0 chr12 38844650 38844960 -104941495 + AluYa5 SINE Alu 1 310 -1 294 73 0 0 chr12 38845177 38845218 -104941237 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 38845606 38845629 -104940826 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 38845874 38845899 -104940556 + AT_rich Low_complexity Low_complexity 1 25 0 2048 130 3 0 chr12 38846170 38846470 -104939985 - AluSq SINE Alu -10 303 3 933 147 7 0 chr12 38846714 38846857 -104939598 + AluSq/x SINE Alu 3 146 -166 202 353 32 39 chr12 38848101 38848257 -104938198 + L2 LINE L2 2614 2768 -546 351 234 113 4 chr12 38848637 38848784 -104937671 + MIR SINE MIR 3 170 -62 235 316 77 39 chr12 38849144 38849224 -104937231 + MIR SINE MIR 32 107 -155 225 0 0 0 chr12 38849224 38849249 -104937206 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 649 56 0 11 chr12 38849249 38849333 -104937122 - L1MA1 LINE L1 -5 6297 6215 235 316 77 39 chr12 38849333 38849411 -104937044 + MIR SINE MIR 106 192 -70 510 225 182 0 chr12 38849455 38849642 -104936813 - MIR SINE MIR -5 257 37 5447 119 2 1 chr12 38851551 38852348 -104934107 - L1PA15 LINE L1 -3 6162 5365 1968 80 50 47 chr12 38852354 38852653 -104933802 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 38852748 38852776 -104933679 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 38852808 38852838 -104933617 + AT_rich Low_complexity Low_complexity 1 30 0 4834 82 4 30 chr12 38855461 38856195 -104930260 + L1P LINE L1 62 776 -5370 246 56 0 0 chr12 38856595 38856631 -104929824 - L1M LINE L1 -879 5289 5254 * 1077 165 85 0 chr12 38856604 38856647 -104929808 - L1 LINE L1 -866 5280 5242 2025 195 62 14 chr12 38856647 38857083 -104929372 - MSTB2 LTR MaLR 0 457 1 1077 165 85 0 chr12 38857083 38857263 -104929192 - L1 LINE L1 -904 5242 5038 21 0 0 0 chr12 38857423 38857444 -104929011 + AT_rich Low_complexity Low_complexity 1 21 0 1470 200 0 23 chr12 38857503 38857803 -104928652 - AluJo SINE Alu -19 293 1 943 304 110 42 chr12 38858096 38858903 -104927552 - L2 LINE L2 -191 3081 2220 204 40 0 0 chr12 38858910 38858935 -104927520 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 208 282 103 68 chr12 38859796 38859913 -104926542 + L2 LINE L2 3152 3272 0 1940 92 3 31 chr12 38860170 38860464 -104925991 + AluY SINE Alu 18 303 -8 294 73 0 0 chr12 38860687 38860728 -104925727 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 38861116 38861139 -104925316 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 38861384 38861409 -104925046 + AT_rich Low_complexity Low_complexity 1 25 0 303 331 16 8 chr12 38861531 38861655 -104924800 + HAL1b LINE L1 1174 1298 -50 2279 86 7 3 chr12 38861680 38861982 -104924473 - AluSq SINE Alu -10 303 1 585 314 54 16 chr12 38862624 38862866 -104923589 - MIR SINE MIR 0 262 12 1962 89 3 31 chr12 38864341 38864634 -104921821 - AluY SINE Alu -9 302 18 208 282 103 68 chr12 38864891 38865008 -104921447 - L2 LINE L2 0 3272 3152 204 40 0 0 chr12 38865869 38865894 -104920561 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 931 304 110 42 chr12 38865901 38866708 -104919747 + L2 LINE L2 2220 3081 -191 1464 199 0 27 chr12 38867001 38867302 -104919153 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr12 38867361 38867382 -104919073 + AT_rich Low_complexity Low_complexity 1 21 0 4849 159 31 76 chr12 38867542 38867722 -104918733 + L1MA10 LINE L1 5038 5225 -1109 2025 195 62 14 chr12 38867722 38868158 -104918297 + MSTB2 LTR MaLR 1 457 0 4849 159 31 76 chr12 38868158 38868754 -104917701 + L1MA10 LINE L1 5225 5751 -583 189 0 0 0 chr12 38868754 38868775 -104917680 + (CA)n Simple_repeat Simple_repeat 2 22 0 4849 159 31 76 chr12 38868775 38869334 -104917121 + L1MA10 LINE L1 5751 6334 0 221 57 29 0 chr12 38870908 38870943 -104915512 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 901 162 28 0 chr12 38870970 38871112 -104915343 - FRAM SINE Alu -27 149 4 203 187 27 27 chr12 38872146 38872221 -104914234 + (TA)n Simple_repeat Simple_repeat 1 75 0 1066 103 85 24 chr12 38872275 38872440 -104914015 - AluSx SINE Alu -137 175 1 1670 186 74 33 chr12 38872550 38872942 -104913513 + Tigger3b DNA MER2_type 2 409 -822 3750 234 73 10 chr12 38873076 38873098 -104913357 + L1 LINE L1 4228 4247 -1899 234 0 0 0 chr12 38873098 38873124 -104913331 + (CA)n Simple_repeat Simple_repeat 2 27 0 3750 234 73 10 chr12 38873124 38874189 -104912266 + L1 LINE L1 4247 5384 -762 1169 195 14 65 chr12 38874239 38874531 -104911924 + L1MB2 LINE L1 5308 5584 -587 1702 227 78 73 chr12 38874531 38875082 -104911373 + MLT2B3 LTR ERVL 1 554 0 3115 157 26 2 chr12 38875082 38875622 -104910833 + L1MB2 LINE L1 5580 6132 -39 428 51 17 0 chr12 38875622 38875681 -104910774 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1798 130 3 85 chr12 38875750 38876081 -104910374 + AluSx SINE Alu 1 304 -8 260 234 48 54 chr12 38876160 38876327 -104910128 + L1ME LINE L1 5112 5277 -869 24667 50 1 3 chr12 38876327 38879416 -104907039 + L1PA3 LINE L1 3 3087 -3059 42760 32 21 1 chr12 38879417 38885445 -104901010 + L1HS LINE L1 4 6154 -1 19009 32 2 2 chr12 38885459 38888535 -104897920 + L1PA3 LINE L1 3072 6152 -3 377 242 73 48 chr12 38888548 38888713 -104897742 + L1ME LINE L1 5263 5431 -733 2634 123 131 6 chr12 38888879 38889392 -104897063 + Tigger3b DNA MER2_type 552 1128 -103 3021 116 31 11 chr12 38889408 38889864 -104896591 + MER1A DNA MER1_type 59 523 -6 593 223 0 0 chr12 38889871 38889983 -104896472 + Tigger3b DNA MER2_type 1119 1230 -1 266 319 31 6 chr12 38890720 38890883 -104895572 + L1MEd LINE L1 13 179 -5940 330 287 116 63 chr12 38891118 38891498 -104894957 + L1MEd LINE L1 440 839 -5280 1202 226 0 0 chr12 38891596 38891853 -104894602 - L1 LINE L1 -1059 5087 4831 910 282 39 41 chr12 38891849 38892569 -104893886 + L1MEd LINE L1 975 1726 -4584 * 373 283 81 29 chr12 38892929 38893311 -104893144 + L1MEd LINE L1 2130 2531 -3598 2154 189 57 30 chr12 38893311 38893851 -104892604 + L1MD3 LINE L1 7439 7993 -2 1041 208 69 86 chr12 38893849 38894286 -104892169 + L1MC4 LINE L1 7560 7991 -51 * 1582 191 11 7 chr12 38894286 38894593 -104891862 - AluJo SINE Alu 0 313 6 1041 208 69 86 chr12 38894593 38894645 -104891810 + L1MC4 LINE L1 7991 8042 0 8161 159 32 24 chr12 38894804 38896532 -104889923 + L1MA2 LINE L1 8 3014 -4551 2195 110 24 0 chr12 38896532 38896824 -104889631 + AluSx SINE Alu 2 300 -12 8161 159 32 24 chr12 38896824 38896989 -104889466 + L1MA2 LINE L1 3014 3176 -4389 2393 120 29 0 chr12 38896990 38897331 -104889124 + THE1B LTR MaLR 1 351 -13 13751 169 21 41 chr12 38897333 38897842 -104888613 + L1MA2 LINE L1 3204 3722 -4001 3020 90 50 0 chr12 38897842 38898265 -104888190 + MLT2A1 LTR ERVL 1 444 0 13751 169 21 41 chr12 38898265 38902370 -104884085 + L1MA2 LINE L1 3722 7723 0 4785 236 27 22 chr12 38903256 38904790 -104881665 + L1 LINE L1 3951 5492 -2073 345 50 0 57 chr12 38904902 38905011 -104881444 + L1PA3 LINE L1 6076 6166 0 329 243 81 47 chr12 38905012 38905160 -104881295 + L1ME3A LINE L1 5279 5431 -731 230 235 44 15 chr12 38905219 38905287 -104881168 + L1ME3A LINE L1 5514 5583 -579 804 232 62 0 chr12 38905311 38905488 -104880967 - MLT1E2 LTR MaLR 0 626 439 570 237 116 82 chr12 38905526 38905758 -104880697 - MLT1E2 LTR MaLR -327 299 60 1124 291 62 67 chr12 38905947 38906561 -104879894 - MLT1E2-int LTR MaLR -100 1271 661 954 259 47 20 chr12 38906843 38907302 -104879153 - MLT1E2 LTR MaLR -19 607 60 380 198 63 61 chr12 38907593 38907758 -104878697 + L1ME3A LINE L1 5785 5951 -215 1652 155 0 59 chr12 38907791 38908081 -104878374 + AluJo SINE Alu 1 273 -39 181 359 120 26 chr12 38908106 38908223 -104878232 - L2 LINE L2 -27 3245 3118 1304 211 83 62 chr12 38908435 38908502 -104877953 + MSTD LTR MaLR 3 67 -329 2570 92 30 14 chr12 38908502 38908871 -104877584 - THE1C LTR MaLR 0 375 1 1304 211 83 62 chr12 38908871 38909187 -104877268 + MSTD LTR MaLR 67 394 -2 1707 124 4 24 chr12 38910528 38910778 -104875677 - AluSg/x SINE Alu -3 309 65 23 33 0 0 chr12 38911136 38911166 -104875289 + AT_rich Low_complexity Low_complexity 1 30 0 214 191 0 21 chr12 38912484 38912531 -104873924 - L2 LINE L2 -4 3309 3264 22 35 0 0 chr12 38912887 38912916 -104873539 + AT_rich Low_complexity Low_complexity 1 29 0 2444 73 0 16 chr12 38913825 38914140 -104872315 - AluY SINE Alu -1 310 1 426 244 0 43 chr12 38914238 38914353 -104872102 + MIR SINE MIR 116 225 -37 6630 71 11 11 chr12 38914354 38915292 -104871163 - L1PA8 LINE L1 -2 6170 5213 254 313 12 24 chr12 38916754 38916837 -104869618 + MIR SINE MIR 16 97 -111 238 316 108 22 chr12 38916927 38917077 -104869378 + MIR SINE MIR 16 181 -66 270 348 43 0 chr12 38918279 38918371 -104868084 - L2 LINE L2 -8 3264 3169 2241 126 0 0 chr12 38919194 38919504 -104866951 - AluSg SINE Alu 0 310 1 2589 56 0 0 chr12 38919839 38920143 -104866312 - AluY SINE Alu -7 304 1 2221 98 3 3 chr12 38920268 38920595 -104865860 + L1P LINE L1 4927 5253 -893 841 189 89 66 chr12 38921522 38921824 -104864631 + MLT1C LTR MaLR 6 314 -153 337 153 24 52 chr12 38921934 38922011 -104864444 - AluS SINE Alu -231 72 1 737 286 150 4 chr12 38922038 38922385 -104864070 - L2 LINE L2 -240 3073 2681 * 1004 306 88 66 chr12 38922383 38923104 -104863351 + L2 LINE L2 2149 2899 -414 2141 95 3 36 chr12 38923104 38923408 -104863047 - AluSc SINE Alu -15 294 1 1004 306 88 66 chr12 38923408 38923796 -104862659 + L2 LINE L2 2899 3277 -36 21 0 0 0 chr12 38923954 38923975 -104862480 + AT_rich Low_complexity Low_complexity 1 21 0 202 278 25 130 chr12 38924245 38924407 -104862048 + L3 LINE CR1 626 770 -807 224 396 97 22 chr12 38925240 38925921 -104860534 - L2 LINE L2 -605 2709 1978 388 339 26 0 chr12 38927630 38927745 -104858710 + L2 LINE L2 3154 3271 -1 986 123 80 71 chr12 38928572 38928784 -104857671 + L1MD1 LINE L1 6029 6242 0 360 269 95 108 chr12 38929579 38929988 -104856467 + L1MC5 LINE L1 7452 7855 -106 2156 111 0 9 chr12 38930787 38931102 -104855353 - AluSx SINE Alu 0 312 1 207 167 0 0 chr12 38932908 38932944 -104853511 + CT-rich Low_complexity Low_complexity 1 36 0 1064 246 82 77 chr12 38933190 38933630 -104852825 + MER65B LTR ERV1 2 513 -18 303 213 74 57 chr12 38933655 38933777 -104852678 + L1ME4a LINE L1 5983 6106 -15 192 77 0 0 chr12 38933904 38933930 -104852525 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1912 180 63 27 chr12 38934458 38934903 -104851552 - MER65C LTR ERV1 0 461 1 436 285 23 32 chr12 38935011 38935232 -104851223 + L1ME4a LINE L1 5664 5882 -239 209 196 43 0 chr12 38935442 38935488 -104850967 + GA-rich Low_complexity Low_complexity 4 51 0 22 35 0 0 chr12 38937464 38937493 -104848962 + AT_rich Low_complexity Low_complexity 1 29 0 340 297 172 0 chr12 38938313 38938441 -104848014 - MIR SINE MIR 0 262 113 1794 301 96 36 chr12 38939061 38939372 -104847083 + L2 LINE L2 1834 2125 -1188 1086 193 157 54 chr12 38939372 38939703 -104846752 + MLT1A1 LTR MaLR 1 365 0 1794 301 96 36 chr12 38939703 38940648 -104845807 + L2 LINE L2 2125 3171 -142 2276 85 3 10 chr12 38940651 38940958 -104845497 + AluY SINE Alu 1 305 -6 1358 92 0 0 chr12 38940958 38941131 -104845324 + AluSp SINE Alu 134 306 -7 221 167 30 121 chr12 38941137 38941203 -104845252 + L2 LINE L2 3139 3198 -74 246 229 0 0 chr12 38941440 38941501 -104844954 + L1ME4a LINE L1 6061 6121 0 421 80 35 6 chr12 38942866 38942942 -104843513 + MLT2A2 LTR ERVL 388 453 0 5510 177 48 1 chr12 38942942 38944076 -104842379 + L1 LINE L1 3653 4840 -1306 1431 129 45 24 chr12 38944089 38944376 -104842079 + L1MA7 LINE L1 5999 6291 0 2304 206 24 24 chr12 38944433 38945010 -104841445 + L1MB1 LINE L1 3211 3787 -2359 392 161 86 37 chr12 38945890 38945971 -104840484 + L1MDa LINE L1 16 100 -6440 652 164 9 0 chr12 38945977 38946093 -104840362 + L1MD1 LINE L1 6074 6190 -52 1824 105 56 4 chr12 38946147 38946414 -104840041 + AluSg SINE Alu 12 292 -18 1773 186 53 11 chr12 38946414 38946775 -104839680 + MER67C LTR ERV1 26 401 -309 2820 176 8 4 chr12 38946778 38947262 -104839193 - MER66B LTR ERV1 0 486 1 2096 200 41 15 chr12 38947266 38949520 -104836935 + L1MB1 LINE L1 3787 6166 -23 1998 132 89 8 chr12 38949520 38949887 -104836568 + L1MB1 LINE L1 5769 6168 0 2096 200 41 15 chr12 38949887 38949908 -104836547 + L1MB1 LINE L1 6166 6185 -4 418 246 93 65 chr12 38950496 38950744 -104835711 + L1MC5 LINE L1 7198 7452 -509 27 29 0 0 chr12 38950757 38950791 -104835664 + AT_rich Low_complexity Low_complexity 1 34 0 390 265 119 7 chr12 38950804 38950955 -104835500 + L1MC4 LINE L1 7735 7902 -140 1158 294 93 13 chr12 38951008 38951171 -104835284 + L1ME3A LINE L1 2918 3067 -3079 1806 172 0 0 chr12 38951171 38951468 -104834987 + AluSx SINE Alu 1 297 -15 1158 294 93 13 chr12 38951468 38952227 -104834228 + L1ME3A LINE L1 3067 3914 -2232 2358 70 3 10 chr12 38952275 38952588 -104833867 + AluY SINE Alu 1 311 0 232 283 0 0 chr12 38952588 38952648 -104833807 + L1ME3A LINE L1 4090 4149 -1997 750 214 80 85 chr12 38952725 38952949 -104833506 + MER58A DNA MER1_type 2 224 0 1722 271 99 37 chr12 38953031 38954274 -104832181 + L1ME3A LINE L1 4808 6170 0 1950 126 0 10 chr12 38955380 38955673 -104830782 - AluSx SINE Alu -22 290 1 315 0 0 0 chr12 38955820 38955855 -104830600 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 399 21 0 0 chr12 38955854 38955902 -104830553 + (GA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr12 38956474 38956503 -104829952 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr12 38957311 38957340 -104829115 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 38957604 38957625 -104828830 + AT_rich Low_complexity Low_complexity 1 21 0 893 325 97 50 chr12 38957909 38958336 -104828119 - L3 LINE CR1 -89 1488 1026 460 130 0 13 chr12 38958336 38958413 -104828042 + MER116 DNA Mariner 5 80 0 893 325 97 50 chr12 38958413 38958560 -104827895 - L3 LINE CR1 -551 1026 887 507 230 93 22 chr12 38958685 38958824 -104827631 - MIR SINE MIR -21 241 93 5536 55 0 7 chr12 38959450 38960156 -104826299 + L1PA7 LINE L1 5454 6154 0 204 67 0 0 chr12 38960161 38960191 -104826264 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 696 274 18 0 chr12 38960211 38960379 -104826076 + MIR SINE MIR 57 227 -35 23 54 0 0 chr12 38960383 38960420 -104826035 + AT_rich Low_complexity Low_complexity 1 37 0 2333 91 3 0 chr12 38961205 38961501 -104824954 + AluSp SINE Alu 1 297 -16 820 121 0 64 chr12 38963310 38963451 -104823004 - FLAM_C SINE Alu -1 132 1 204 182 0 0 chr12 38963956 38964000 -104822455 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 689 194 107 20 chr12 38965658 38965854 -104820601 - MLT1A1 LTR MaLR -127 238 26 519 287 0 0 chr12 38966939 38967068 -104819387 - MER94 DNA DNA -5 129 1 272 253 144 41 chr12 38967103 38967249 -104819206 - L2 LINE L2 -560 2754 2594 2477 55 0 10 chr12 38967528 38967840 -104818615 - AluY SINE Alu -2 309 1 395 355 121 23 chr12 38967843 38968301 -104818154 + L2 LINE L2 2690 3219 -94 23 0 0 0 chr12 38968385 38968408 -104818047 + AT_rich Low_complexity Low_complexity 1 23 0 719 178 15 22 chr12 38968507 38968642 -104817813 - AluJb SINE Alu -178 134 1 1324 149 56 63 chr12 38969116 38969418 -104817037 - MER44D DNA MER2_type -38 571 2 2241 150 56 30 chr12 38970309 38970825 -104815630 - MLT2A2 LTR ERVL -2 552 1 426 333 72 46 chr12 38970861 38971318 -104815137 - L1 LINE L1 -1531 4615 4147 1740 237 84 22 chr12 38971412 38971901 -104814554 + LTR40a LTR ERVL 1 519 0 2319 93 0 3 chr12 38972161 38972463 -104813992 + AluSg SINE Alu 1 301 -9 2212 114 0 3 chr12 38972464 38972761 -104813694 + AluSx SINE Alu 1 296 -16 323 316 64 44 chr12 38972810 38973226 -104813229 - ERVL LTR ERVL -333 5431 5011 519 313 35 46 chr12 38973296 38973641 -104812814 - ERVL LTR ERVL -956 4808 4468 858 322 44 0 chr12 38973754 38974096 -104812359 - ERVL LTR ERVL -3496 2197 1802 785 255 49 36 chr12 38976632 38976890 -104809565 - L1MEc LINE L1 -6022 374 110 198 118 0 0 chr12 38976890 38976924 -104809531 + (TTG)n Simple_repeat Simple_repeat 2 35 0 785 255 49 36 chr12 38976924 38976994 -104809461 - L1MEc LINE L1 -6286 110 42 41539 44 1 3 chr12 38977891 38984043 -104802412 - L1PA3 LINE L1 -3 6152 13 798 246 5 0 chr12 38984207 38984414 -104802041 + L1 LINE L1 2728 2935 -3211 2489 249 81 20 chr12 38984416 38986452 -104800003 - L1 LINE L1 -3365 3017 971 794 128 0 0 chr12 38986452 38986569 -104799886 - MSTB LTR MaLR -309 117 1 601 237 40 109 chr12 38987295 38987616 -104798839 + AluJo SINE Alu 1 299 -3 2827 99 30 180 chr12 38987984 38988711 -104797744 + MER51A LTR ERV1 1 618 -16 2125 135 0 0 chr12 38989128 38989432 -104797023 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 38989466 38989497 -104796958 + AT_rich Low_complexity Low_complexity 1 31 0 2137 105 10 7 chr12 38989802 38990096 -104796359 - AluSp SINE Alu -18 295 1 220 286 10 61 chr12 38990545 38990643 -104795812 - MIR SINE MIR -95 167 75 3449 101 28 1 chr12 38991373 38991912 -104794543 + MER41A LTR ERV1 1 554 0 1881 172 27 12 chr12 38992694 38993032 -104793423 + MER61A LTR ERV1 1 343 0 25 75 0 0 chr12 38993385 38993438 -104793017 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr12 38993797 38993825 -104792630 + AT_rich Low_complexity Low_complexity 1 28 0 206 292 42 0 chr12 38993849 38993921 -104792534 + MER5C DNA MER1_type 14 88 -236 2468 66 0 0 chr12 38994512 38994813 -104791642 + AluY SINE Alu 1 301 -10 206 296 45 45 chr12 38995531 38995619 -104790836 + L2 LINE L2 2334 2421 -893 1605 240 20 24 chr12 38995629 38996124 -104790331 + MLT1D LTR MaLR 13 505 0 487 257 33 26 chr12 38996656 38996808 -104789647 - MIR SINE MIR -26 236 84 354 311 34 51 chr12 38996975 38997152 -104789303 + L1ME4a LINE L1 4152 4325 -1821 3551 153 38 19 chr12 38997614 38998334 -104788121 - L1MB7 LINE L1 -8 6176 5444 348 326 27 16 chr12 38998845 38999032 -104787423 + L1ME4a LINE L1 5265 5453 -717 2037 126 136 16 chr12 38999290 38999672 -104786783 + MSTA LTR MaLR 1 428 0 701 204 121 11 chr12 38999804 38999983 -104786472 + MIR SINE MIR 38 236 -26 265 176 29 73 chr12 39000121 39000189 -104786266 - L2 LINE L2 -5 3308 3244 187 327 204 6 chr12 39001239 39001401 -104785054 - MIR SINE MIR -46 216 23 309 359 34 26 chr12 39002554 39002671 -104783784 - L2 LINE L2 -8 3264 3147 267 79 0 0 chr12 39004481 39004519 -104781936 + (TA)n Simple_repeat Simple_repeat 1 38 0 1625 189 0 14 chr12 39004540 39004826 -104781629 - AluSx SINE Alu -30 282 1 2313 88 3 3 chr12 39005045 39005342 -104781113 - AluSp SINE Alu -16 297 1 3807 107 5 0 chr12 39006761 39007312 -104779143 + MER41A LTR ERV1 1 554 0 236 333 58 25 chr12 39007632 39007752 -104778703 - MIR3 SINE MIR -9 199 76 27 29 0 0 chr12 39007933 39007967 -104778488 + AT_rich Low_complexity Low_complexity 1 34 0 480 18 0 0 chr12 39008250 39008307 -104778148 + (TC)n Simple_repeat Simple_repeat 1 57 0 313 267 61 0 chr12 39009953 39010084 -104776371 + L1ME4a LINE L1 5766 5904 -217 225 198 62 10 chr12 39010086 39010182 -104776273 + (TA)n Simple_repeat Simple_repeat 1 101 0 662 196 0 14 chr12 39010287 39010425 -104776030 - MIR SINE MIR -15 247 112 1638 220 3 21 chr12 39011641 39012013 -104774442 + MLT1A1 LTR MaLR 1 365 0 467 205 79 53 chr12 39012067 39012257 -104774198 + MER63 DNA MER1_type 1 195 -866 * 1127 216 75 23 chr12 39012254 39012601 -104773854 + MER63 DNA MER1_type 641 1005 -56 448 237 42 34 chr12 39012736 39012854 -104773601 - MER5A DNA MER1_type -16 173 55 212 310 161 11 chr12 39012900 39012987 -104773468 - L2 LINE L2 -11 3261 3162 2100 119 3 7 chr12 39013422 39013716 -104772739 + AluSx SINE Alu 1 293 -19 1209 95 18 24 chr12 39014625 39014961 -104771494 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 493 294 95 17 chr12 39015301 39015532 -104770923 - MIR SINE MIR 0 262 14 24 67 0 0 chr12 39015562 39015607 -104770848 + AT_rich Low_complexity Low_complexity 1 45 0 2391 75 0 38 chr12 39016945 39017263 -104769192 - AluSg SINE Alu -4 306 1 2571 217 61 69 chr12 39019820 39020469 -104765986 - L1ME1 LINE L1 -5 6161 5508 2207 97 0 13 chr12 39020469 39020767 -104765688 + AluSc SINE Alu 1 294 -15 2571 217 61 69 chr12 39020767 39021820 -104764635 - L1ME1 LINE L1 -658 5508 4469 900 261 40 10 chr12 39021820 39022123 -104764332 + MLT1C LTR MaLR 156 467 0 51 83 0 0 chr12 39022267 39022388 -104764067 + AT_rich Low_complexity Low_complexity 1 121 0 274 268 0 0 chr12 39022465 39022521 -104763934 - L2 LINE L2 -2 3270 3215 2262 176 52 2 chr12 39022636 39023061 -104763394 - L1PA16 LINE L1 -9 6157 5712 203 262 0 0 chr12 39023199 39023260 -104763195 + A-rich Low_complexity Low_complexity 1 61 0 * 205 77 77 0 chr12 39023223 39023262 -104763193 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 673 273 88 73 chr12 39024415 39024826 -104761629 - MLT1H1 LTR MaLR -3 552 130 610 182 63 0 chr12 39025629 39025722 -104760733 - MER3 DNA MER1_type 0 209 102 590 75 0 0 chr12 39025722 39025802 -104760653 - MADE1 DNA Mariner 0 80 1 610 182 63 0 chr12 39025802 39025851 -104760604 - MER3 DNA MER1_type -107 102 58 2220 117 3 0 chr12 39025878 39026185 -104760270 - AluSx SINE Alu -4 308 1 366 329 14 56 chr12 39026224 39026437 -104760018 + L2 LINE L2 2521 2724 -590 210 331 54 31 chr12 39026451 39026581 -104759874 + L2 LINE L2 2936 3068 -204 262 347 126 12 chr12 39026850 39027017 -104759438 + L2 LINE L2 2863 3048 -224 21 71 0 0 chr12 39028692 39028734 -104757721 + AT_rich Low_complexity Low_complexity 1 42 0 1384 144 0 0 chr12 39028927 39029121 -104757334 + AluSq SINE Alu 1 194 -119 395 189 81 34 chr12 39029132 39029280 -104757175 + L1ME LINE L1 5121 5275 -871 418 144 43 214 chr12 39029393 39029615 -104756840 + L1ME LINE L1 5546 5726 -440 550 207 7 7 chr12 39029624 39029769 -104756686 + L1MA10 LINE L1 6190 6334 0 452 311 53 0 chr12 39029769 39029978 -104756477 + L1MC/D LINE L1 5602 5821 -1987 948 118 0 0 chr12 39029981 39030108 -104756347 - AluSq/x SINE Alu -185 127 1 26 0 0 0 chr12 39030212 39030238 -104756217 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 39030882 39030904 -104755551 + AT_rich Low_complexity Low_complexity 1 22 0 518 160 4 6 chr12 39030907 39031151 -104755304 + AluSx SINE Alu 1 299 -13 185 280 20 0 chr12 39031726 39031776 -104754679 + L2 LINE L2 3221 3271 -1 287 292 73 21 chr12 39032078 39032174 -104754281 - MIR SINE MIR -96 166 66 434 274 96 17 chr12 39032327 39032547 -104753908 - L1M4 LINE L1 -2969 3177 2976 1539 175 88 12 chr12 39032547 39032867 -104753588 + MER2 DNA MER2_type 1 344 0 434 274 96 17 chr12 39032867 39033054 -104753401 - L1M4 LINE L1 -3170 2976 2738 546 37 37 0 chr12 39033409 39033490 -104752965 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 675 201 36 22 chr12 39033920 39034059 -104752396 - FLAM_C SINE Alu -2 141 1 524 209 76 13 chr12 39034174 39034332 -104752123 - L1MD3 LINE L1 0 7995 7828 2332 102 0 0 chr12 39035012 39035315 -104751140 - AluSq SINE Alu -10 303 1 243 0 0 0 chr12 39035811 39035838 -104750617 + (TG)n Simple_repeat Simple_repeat 1 27 0 399 317 79 45 chr12 39035880 39036322 -104750133 - ERVL LTR ERVL -397 5367 4911 274 259 78 26 chr12 39036379 39036495 -104749960 - ERVL LTR ERVL -994 4770 4649 2337 110 0 0 chr12 39036659 39036959 -104749496 + AluSq SINE Alu 1 300 -13 27 65 0 0 chr12 39037190 39037221 -104749234 + AT_rich Low_complexity Low_complexity 1 31 0 227 257 27 14 chr12 39037845 39037919 -104748536 - MLT1I LTR MaLR -24 385 311 359 174 67 15 chr12 39037979 39038083 -104748372 - MLT1J2 LTR MaLR -237 172 67 437 308 73 30 chr12 39038208 39038442 -104748013 - MIR SINE MIR -1 261 18 378 61 0 0 chr12 39038755 39038804 -104747651 + (TG)n Simple_repeat Simple_repeat 2 50 0 285 204 139 109 chr12 39039193 39039235 -104747220 - L1MC5 LINE L1 -268 7693 7654 1841 160 35 0 chr12 39039235 39039522 -104746933 + AluSx SINE Alu 1 297 -15 285 204 139 109 chr12 39039522 39039945 -104746510 - L1MC5 LINE L1 -307 7654 7214 735 221 31 81 chr12 39040129 39040487 -104745968 - L1MC5 LINE L1 -861 7100 6761 2219 138 161 4 chr12 39040996 39041467 -104744988 - LTR10A LTR ERV1 -63 546 2 9665 235 14 28 chr12 39041544 39043998 -104742457 - LTR10A-int LTR ERV1 -2 6647 4229 254 179 0 18 chr12 39043998 39044054 -104742401 - HERVI LTR ERV1 -2478 5307 5253 * 4866 262 18 33 chr12 39044051 39045930 -104740525 - HERVI LTR ERV1 -2712 4114 3169 2173 89 7 14 chr12 39045930 39046222 -104740233 - AluY SINE Alu -21 290 1 4866 262 18 33 chr12 39046222 39046801 -104739654 - HERVI LTR ERV1 -3657 3169 2583 2415 246 81 80 chr12 39046779 39048180 -104738275 - HERVI LTR ERV1 -5244 1405 3 * 2354 116 156 8 chr12 39048195 39048669 -104737786 - LTR10A LTR ERV1 -64 545 2 333 304 62 17 chr12 39049091 39049384 -104737071 + L1ME LINE L1 5353 5658 -463 2315 89 0 22 chr12 39049384 39049697 -104736758 + AluY SINE Alu 1 306 -5 251 273 91 28 chr12 39049698 39049841 -104736614 + L1ME LINE L1 5641 5792 -378 408 228 64 29 chr12 39050682 39050853 -104735602 - L1MC5 LINE L1 -50 7911 7735 19166 139 40 18 chr12 39050888 39054303 -104732152 + L1M1 LINE L1 19 3509 -4056 216 241 0 89 chr12 39054458 39054537 -104731918 + MIR SINE MIR 124 195 -67 22 0 0 0 chr12 39054699 39054721 -104731734 + AT_rich Low_complexity Low_complexity 1 22 0 239 295 45 36 chr12 39055058 39055170 -104731285 + MIR3 SINE MIR 85 197 -11 25 31 0 0 chr12 39055925 39055957 -104730498 + AT_rich Low_complexity Low_complexity 1 32 0 518 309 34 11 chr12 39057774 39057952 -104728503 + MIR SINE MIR 56 237 -25 391 384 50 0 chr12 39058803 39059045 -104727410 - MIR SINE MIR -7 255 2 3243 223 70 8 chr12 39059578 39060636 -104725819 + L1MA3 LINE L1 2253 3375 -2771 6874 138 13 2 chr12 39060780 39062846 -104723609 + L1MA3 LINE L1 4019 6107 -198 500 75 12 0 chr12 39063064 39063144 -104723311 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr12 39063294 39063599 -104722856 - AluJb SINE Alu -4 308 1 247 179 0 36 chr12 39064530 39064586 -104721869 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1215 340 43 28 chr12 39064659 39065615 -104720840 - ERVL LTR ERVL -3173 2591 1622 1081 189 76 76 chr12 39066029 39066164 -104720291 + MER2 DNA MER2_type 1 135 -209 1948 155 3 7 chr12 39066164 39066473 -104719982 - AluJo SINE Alu -4 308 1 1081 189 76 76 chr12 39066473 39066681 -104719774 + MER2 DNA MER2_type 134 344 0 300 161 18 0 chr12 39067375 39067431 -104719024 - LTR67 LTR ERVL -17 540 484 230 256 51 0 chr12 39067431 39067449 -104719006 - MLT1K LTR MaLR -15 569 492 226 346 90 0 chr12 39068212 39068290 -104718165 - MER5B DNA MER1_type 0 178 94 260 239 130 22 chr12 39068305 39068397 -104718058 - MER91C DNA MER1_type -22 118 17 354 294 152 68 chr12 39070633 39070873 -104715582 + L3 LINE CR1 293 564 -1013 3188 122 32 14 chr12 39070873 39071375 -104715080 + MER9 LTR ERVK 1 511 0 354 294 152 68 chr12 39071375 39071430 -104715025 + L3 LINE CR1 564 613 -964 346 377 181 4 chr12 39071486 39071767 -104714688 - L2 LINE L2 -9 3263 2933 38 51 0 0 chr12 39071815 39071874 -104714581 + AT_rich Low_complexity Low_complexity 1 59 0 287 227 45 0 chr12 39072417 39072571 -104713884 + (CA)n Simple_repeat Simple_repeat 2 162 0 384 226 33 104 chr12 39072779 39072907 -104713548 + MLT1E1 LTR MaLR 98 233 -360 746 201 29 17 chr12 39072907 39072992 -104713463 - L1PB4 LINE L1 0 6156 6073 2184 118 27 18 chr12 39072992 39073323 -104713132 + MER1B DNA MER1_type 1 334 -3 746 201 29 17 chr12 39073323 39073411 -104713044 - L1PB4 LINE L1 -83 6073 5981 384 226 33 104 chr12 39073411 39073516 -104712939 + MLT1E1 LTR MaLR 233 408 -185 762 167 14 0 chr12 39073517 39073655 -104712800 - MER41A LTR ERV1 0 554 415 3215 148 8 4 chr12 39073823 39074344 -104712111 - MER41B LTR ERV1 -109 526 4 718 194 31 31 chr12 39074375 39074535 -104711920 + MLT1E1 LTR MaLR 495 654 0 1232 140 0 0 chr12 39074819 39075019 -104711436 + L1PB1 LINE L1 1 200 -6663 9256 98 28 8 chr12 39075021 39076948 -104709507 + L1PB1 LINE L1 636 2760 -4103 6243 153 46 4 chr12 39076931 39078604 -104707851 + L1PB1 LINE L1 5111 6865 -2 * 24 0 0 0 chr12 39078604 39078628 -104707827 + AT_rich Low_complexity Low_complexity 1 24 0 216 333 40 0 chr12 39078806 39078881 -104707574 - L2 LINE L2 -558 2756 2679 256 164 55 0 chr12 39078899 39078954 -104707501 - L1MA7 LINE L1 -8 6283 6226 440 198 123 130 chr12 39079189 39079513 -104706942 - LTR37A LTR ERV1 -21 405 84 1985 97 86 0 chr12 39079584 39079863 -104706592 - AluSg SINE Alu -7 303 1 3775 166 24 24 chr12 39079934 39080656 -104705799 - MER50 LTR ERV1 -12 722 1 362 328 57 16 chr12 39081510 39081632 -104704823 - L2 LINE L2 -8 3264 3138 22 0 0 0 chr12 39082167 39082189 -104704266 + AT_rich Low_complexity Low_complexity 1 22 0 395 301 51 32 chr12 39082440 39082656 -104703799 - LTR33 LTR ERVL 0 521 302 749 243 192 5 chr12 39082786 39083000 -104703455 + MIR SINE MIR 6 259 -3 329 271 127 25 chr12 39083296 39083414 -104703041 + MLT1K LTR MaLR 293 422 -166 2549 165 31 0 chr12 39083476 39083889 -104702566 - MSTB LTR MaLR 0 426 1 182 212 167 15 chr12 39084199 39084265 -104702190 - MIR SINE MIR -89 173 98 2232 123 0 0 chr12 39084265 39084566 -104701889 + AluSg1 SINE Alu 1 301 -8 2159 108 24 0 chr12 39084688 39084985 -104701470 + AluSp SINE Alu 1 304 -9 237 306 12 17 chr12 39085119 39085292 -104701163 + (TA)n Simple_repeat Simple_repeat 1 172 0 221 364 125 0 chr12 39085633 39085721 -104700734 - L2 LINE L2 0 3272 3174 2243 122 0 51 chr12 39086728 39087082 -104699373 - MER1B DNA MER1_type -1 336 1 223 141 16 141 chr12 39087284 39087348 -104699107 + MIR3 SINE MIR 144 199 -9 871 131 22 7 chr12 39088368 39088505 -104697950 - AluJo SINE Alu -173 139 1 22 35 0 0 chr12 39089776 39089805 -104696650 + AT_rich Low_complexity Low_complexity 1 29 0 676 181 68 17 chr12 39090532 39090709 -104695746 - MER53 DNA DNA -1 188 3 896 101 0 8 chr12 39091410 39091576 -104694879 + AluYa5 SINE Alu 155 319 0 2294 117 114 5 chr12 39091728 39092114 -104694341 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr12 39092279 39092316 -104694139 + AT_rich Low_complexity Low_complexity 1 37 0 1417 149 64 73 chr12 39093177 39093505 -104692950 - MER2 DNA MER2_type -12 333 9 481 255 69 7 chr12 39093507 39093652 -104692803 - MIR SINE MIR -6 256 103 452 317 48 43 chr12 39095352 39095538 -104690917 - MIR3 SINE MIR -12 196 10 14978 179 21 11 chr12 39095993 39096910 -104689545 - L1PB1 LINE L1 -1 6866 5960 2194 121 3 3 chr12 39096910 39097215 -104689240 - AluSc SINE Alu -4 305 1 14978 179 21 11 chr12 39097215 39100184 -104686271 - L1PB1 LINE L1 -907 5960 2657 2048 138 7 0 chr12 39100184 39100481 -104685974 - AluY SINE Alu -12 299 1 14978 179 21 11 chr12 39100481 39102522 -104683933 - L1PB1 LINE L1 -4210 2657 639 1134 157 0 0 chr12 39102520 39102717 -104683738 - L1PB1 LINE L1 -6666 197 1 * 2085 137 0 0 chr12 39102806 39103106 -104683349 + AluSc SINE Alu 1 300 -9 287 221 13 26 chr12 39103314 39103391 -104683064 + MLT1J2 LTR MaLR 345 420 -30 21 0 0 0 chr12 39104028 39104049 -104682406 + AT_rich Low_complexity Low_complexity 1 21 0 391 384 54 17 chr12 39104726 39105189 -104681266 - L2 LINE L2 -404 2910 2431 522 289 91 45 chr12 39105235 39105588 -104680867 + MLT1A2 LTR MaLR 6 374 0 345 280 67 36 chr12 39105599 39105792 -104680663 - L2 LINE L2 -931 2383 2185 2730 248 80 70 chr12 39105817 39107167 -104679288 - L2 LINE L2 -1 3312 1956 2293 86 3 7 chr12 39107188 39107490 -104678965 + AluY SINE Alu 1 301 -10 2307 228 42 19 chr12 39107499 39108069 -104678386 - MER119 DNA MER1_type 0 583 1 312 263 10 30 chr12 39108240 39108339 -104678116 - L2 LINE L2 -1431 1883 1787 485 238 59 123 chr12 39109064 39109150 -104677305 + L2 LINE L2 2995 3085 -228 2149 163 75 5 chr12 39109150 39109548 -104676907 + MSTB LTR MaLR 1 426 0 485 238 59 123 chr12 39109548 39109802 -104676653 + L2 LINE L2 3085 3313 0 335 226 54 54 chr12 39110956 39111049 -104675406 - L1MC2 LINE L1 -28 6316 6224 1365 143 0 0 chr12 39111080 39111304 -104675151 + L1 LINE L1 3348 3571 -2575 2122 147 16 0 chr12 39111307 39111681 -104674774 + L1 LINE L1 3454 3833 -2313 289 79 5 5 chr12 39111695 39111898 -104674557 + AluSp SINE Alu 1 298 -5 251 266 0 0 chr12 39111901 39111965 -104674490 + L1 LINE L1 3841 3904 -2242 * 5121 174 29 18 chr12 39111962 39112944 -104673511 + L1 LINE L1 4315 5312 -834 2112 112 7 0 chr12 39112944 39113231 -104673224 + AluSg SINE Alu 1 289 -21 5121 174 29 18 chr12 39113231 39113325 -104673130 + L1 LINE L1 5312 5403 -743 230 130 65 0 chr12 39113332 39113378 -104673077 - L1MC2 LINE L1 -2517 5525 5477 349 243 19 19 chr12 39113439 39113546 -104672909 + GA-rich Low_complexity Low_complexity 1 107 0 1765 151 55 27 chr12 39113599 39113964 -104672491 + THE1C LTR MaLR 1 375 0 321 26 0 0 chr12 39114250 39114288 -104672167 + (TA)n Simple_repeat Simple_repeat 1 38 0 395 253 68 39 chr12 39115374 39115655 -104670800 + L1M4 LINE L1 4423 4711 -1435 255 152 0 0 chr12 39115686 39115732 -104670723 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr12 39115732 39115756 -104670699 + AT_rich Low_complexity Low_complexity 1 24 0 1265 224 59 11 chr12 39116600 39116886 -104669569 + AluJo SINE Alu 1 300 -12 732 157 20 169 chr12 39116987 39117235 -104669220 + AluJb SINE Alu 1 211 -101 2226 117 0 0 chr12 39117339 39117646 -104668809 + AluSg SINE Alu 1 307 -3 1384 205 85 20 chr12 39118273 39118614 -104667841 + MLT1A1 LTR MaLR 2 364 -1 247 127 64 9 chr12 39118638 39118748 -104667707 + (TA)n Simple_repeat Simple_repeat 2 117 0 2663 149 0 48 chr12 39119074 39119570 -104666885 - L1MA7 LINE L1 -386 5905 5434 272 118 59 0 chr12 39119572 39119623 -104666832 + L1MA7 LINE L1 6237 6290 -1 222 171 0 0 chr12 39119791 39119832 -104666623 + CT-rich Low_complexity Low_complexity 3 43 0 407 318 110 12 chr12 39120676 39120849 -104665606 + L2 LINE L2 3083 3272 0 312 91 0 0 chr12 39120977 39121021 -104665434 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr12 39121785 39121813 -104664642 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 39122127 39122152 -104664303 + AT_rich Low_complexity Low_complexity 1 25 0 232 347 54 12 chr12 39123814 39123979 -104662476 - MIR SINE MIR -65 143 20 2244 113 0 0 chr12 39124275 39124576 -104661879 + AluSg SINE Alu 1 301 -9 393 309 41 0 chr12 39124648 39124771 -104661684 - MIR SINE MIR -88 174 47 232 281 0 0 chr12 39125148 39125205 -104661250 + Charlie2 DNA MER1_type 25 81 -2701 377 247 10 41 chr12 39125238 39125335 -104661120 - L1MC/D LINE L1 -2205 5603 5510 270 153 0 0 chr12 39126489 39126548 -104659907 + T-rich Low_complexity Low_complexity 1 59 0 1010 25 0 0 chr12 39126551 39126671 -104659784 - L1PA4 LINE L1 -3 6152 6033 21 82 0 0 chr12 39128250 39128299 -104658156 + AT_rich Low_complexity Low_complexity 1 49 0 226 214 0 0 chr12 39128696 39128738 -104657717 + (TGG)n Simple_repeat Simple_repeat 2 43 0 2348 108 0 0 chr12 39129716 39130023 -104656432 + AluSc SINE Alu 1 307 -2 270 0 0 0 chr12 39130447 39130477 -104655978 + (TA)n Simple_repeat Simple_repeat 1 30 0 846 260 154 9 chr12 39130728 39131066 -104655389 + MLT1H1 LTR MaLR 1 387 -168 44 56 0 0 chr12 39132117 39132189 -104654266 + AT_rich Low_complexity Low_complexity 1 72 0 227 235 265 10 chr12 39132431 39132529 -104653926 - MIR SINE MIR -56 206 84 2350 50 7 0 chr12 39132615 39132897 -104653558 + AluY SINE Alu 24 307 -4 608 275 44 6 chr12 39133051 39133211 -104653244 - MER5B DNA MER1_type -12 166 1 2108 107 0 7 chr12 39133681 39133990 -104652465 - AluSg SINE Alu 0 307 1 2178 111 0 29 chr12 39136468 39136775 -104649680 - AluSg SINE Alu -12 298 1 38942 48 1 10 chr12 39137811 39142712 -104643743 - L1P LINE L1 -1274 4872 13 849 231 58 0 chr12 39142841 39143084 -104643371 + L1 LINE L1 2680 2936 -3210 2515 249 117 25 chr12 39143085 39145086 -104641369 - L1 LINE L1 -3365 3017 971 829 157 0 39 chr12 39145086 39145239 -104641216 - MSTB LTR MaLR -279 147 1 599 237 40 109 chr12 39145965 39146286 -104640169 + AluJo SINE Alu 1 299 -3 3047 99 31 179 chr12 39146654 39147389 -104639066 + MER51A LTR ERV1 1 642 -15 2101 135 0 0 chr12 39147798 39148102 -104638353 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 39148136 39148167 -104638288 + AT_rich Low_complexity Low_complexity 1 31 0 1847 105 54 37 chr12 39148523 39148818 -104637637 - AluSg SINE Alu 0 310 11 319 172 81 0 chr12 39149522 39149609 -104636846 + AluJb SINE Alu 85 178 -124 1016 190 22 0 chr12 39149892 39150076 -104636379 + MER5A DNA MER1_type 2 189 0 427 228 11 11 chr12 39150524 39150616 -104635839 + MIR SINE MIR 56 147 -115 526 293 163 30 chr12 39150630 39150900 -104635555 + L2 LINE L2 3008 3313 0 27 29 0 0 chr12 39151061 39151095 -104635360 + AT_rich Low_complexity Low_complexity 1 34 0 613 285 5 15 chr12 39151432 39151632 -104634823 - L2 LINE L2 -1628 1686 1489 5677 246 61 39 chr12 39151722 39152672 -104633783 - L1M4c LINE L1 -4586 2373 1445 369 0 0 0 chr12 39152672 39152713 -104633742 + (TG)n Simple_repeat Simple_repeat 2 42 0 5677 246 61 39 chr12 39152713 39154004 -104632451 - L1M4c LINE L1 -5514 1445 102 1916 92 136 27 chr12 39154045 39154383 -104632072 + MER51B LTR ERV1 1 375 -2 24 0 0 0 chr12 39154860 39154884 -104631571 + AT_rich Low_complexity Low_complexity 1 24 0 812 264 5 10 chr12 39155069 39155262 -104631193 - MER41D LTR ERV1 -1 556 365 516 244 94 37 chr12 39155682 39155876 -104630579 + Charlie8 DNA MER1_type 20 241 -100 343 101 101 114 chr12 39155876 39155955 -104630500 - MADE1 DNA Mariner 0 80 3 516 244 94 37 chr12 39155955 39156004 -104630451 + Charlie8 DNA MER1_type 241 286 -55 2228 70 40 7 chr12 39156252 39156553 -104629902 + AluY SINE Alu 1 311 0 2105 106 0 0 chr12 39156869 39157152 -104629303 - AluSx SINE Alu -10 302 20 2470 58 10 10 chr12 39157170 39157480 -104628975 - AluY SINE Alu -1 310 1 2054 106 7 17 chr12 39158344 39158646 -104627809 - AluY SINE Alu -12 299 1 315 314 35 0 chr12 39159169 39159255 -104627200 + L3 LINE CR1 1393 1481 -96 1688 195 0 10 chr12 39160114 39160406 -104626049 + AluJo SINE Alu 1 289 -23 23 0 0 0 chr12 39161331 39161354 -104625101 + AT_rich Low_complexity Low_complexity 1 23 0 386 316 62 34 chr12 39162107 39162284 -104624171 - MIR3 SINE MIR -11 197 16 22 0 0 0 chr12 39162568 39162590 -104623865 + AT_rich Low_complexity Low_complexity 1 22 0 217 241 0 89 chr12 39162751 39162830 -104623625 - MIR SINE MIR -67 195 124 270 56 0 0 chr12 39163168 39163204 -104623251 + (TG)n Simple_repeat Simple_repeat 1 36 0 2595 272 109 28 chr12 39164070 39165233 -104621222 - L2 LINE L2 -1223 2091 835 1331 129 214 15 chr12 39165385 39165656 -104620799 + L1MC3 LINE L1 5445 5769 -2226 4414 179 111 30 chr12 39165657 39166673 -104619782 + L1MC3 LINE L1 6678 7776 -9 280 288 54 9 chr12 39167115 39167226 -104619229 - L2 LINE L2 -5 3308 3193 698 203 0 30 chr12 39167910 39168043 -104618412 + FLAM_C SINE Alu 3 131 -12 38893 47 5 8 chr12 39169206 39174092 -104612363 + L1P LINE L1 2 4872 -1274 2178 111 0 29 chr12 39175128 39175435 -104611020 + AluSg SINE Alu 1 298 -12 2109 107 0 7 chr12 39177913 39178222 -104608233 + AluSg SINE Alu 1 307 0 608 275 44 6 chr12 39178691 39178851 -104607604 + MER5B DNA MER1_type 1 166 -12 2350 50 7 0 chr12 39179005 39179287 -104607168 - AluY SINE Alu -4 307 24 242 246 305 8 chr12 39179373 39179491 -104606964 + MIR SINE MIR 84 236 -26 190 403 0 0 chr12 39181583 39181645 -104604810 + L2 LINE L2 3125 3186 -86 548 296 61 38 chr12 39181743 39181998 -104604457 + L1MC/D LINE L1 3804 4052 -2094 823 212 12 18 chr12 39181998 39182163 -104604292 + FRAM SINE Alu 1 164 -2 548 296 61 38 chr12 39182163 39183050 -104603405 + L1MC/D LINE L1 4052 5051 -1095 329 281 31 23 chr12 39183090 39183218 -104603237 + L1MC/D LINE L1 5122 5250 -896 307 288 65 6 chr12 39183239 39183409 -104603046 + L1MC/D LINE L1 5309 5488 -2320 2465 31 0 0 chr12 39183479 39183773 -104602682 - L1PA4 LINE L1 -2 6153 5860 292 263 26 174 chr12 39184082 39184272 -104602183 + L2 LINE L2 3109 3270 -2 291 326 37 37 chr12 39184280 39184415 -104602040 + L3b LINE CR1 1253 1387 -196 587 261 114 0 chr12 39185481 39185665 -104600790 + MIR SINE MIR 2 206 -56 42 89 0 0 chr12 39185665 39185777 -104600678 + AT_rich Low_complexity Low_complexity 1 112 0 1750 204 53 71 chr12 39186951 39187068 -104599387 + MLT1D LTR MaLR 1 119 -386 2486 122 2 17 chr12 39187068 39187470 -104598985 + L1MA5A LINE L1 5901 6296 -1 1750 204 53 71 chr12 39187470 39187862 -104598593 + MLT1D LTR MaLR 119 501 -4 2050 165 44 0 chr12 39188070 39188475 -104597980 + L1MA8 LINE L1 5853 6275 -16 2273 93 28 0 chr12 39188516 39188807 -104597648 - AluSc SINE Alu -10 299 1 14923 122 27 10 chr12 39188883 39191258 -104595197 + Tigger1 DNA MER2_type 1 2417 -1 1620 173 13 51 chr12 39191593 39191721 -104594734 + AluJo SINE Alu 1 132 -180 225 0 0 0 chr12 39191721 39191746 -104594709 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1620 173 13 51 chr12 39191746 39191930 -104594525 + AluJo SINE Alu 132 301 -11 21 36 0 0 chr12 39193230 39193258 -104593197 + AT_rich Low_complexity Low_complexity 1 28 0 533 330 101 68 chr12 39194415 39194918 -104591537 + L2 LINE L2 1802 2321 -993 221 348 43 26 chr12 39195826 39195941 -104590514 - L2 LINE L2 -2 3311 3195 1643 260 109 47 chr12 39195999 39196252 -104590203 + L2 LINE L2 2400 2636 -677 476 272 59 24 chr12 39196252 39196421 -104590034 + MER69A DNA AcHobo 3 177 0 1643 260 109 47 chr12 39196421 39197007 -104589448 + L2 LINE L2 2636 3301 -12 187 250 155 103 chr12 39197422 39197538 -104588917 - MIR SINE MIR -70 138 17 319 306 145 7 chr12 39197790 39198094 -104588361 + L1MC4a LINE L1 4525 4870 -1276 1372 217 51 51 chr12 39198186 39198559 -104587896 + MLT1A2 LTR MaLR 2 374 0 338 296 106 37 chr12 39198791 39199304 -104587151 + L1MC4a LINE L1 5282 5849 -297 21910 146 38 10 chr12 39200374 39204221 -104582234 + L1MA2 LINE L1 17 3971 -3594 6370 146 19 7 chr12 39204398 39206506 -104579949 + L1MA2 LINE L1 5596 7719 -4 23 0 0 0 chr12 39206793 39206816 -104579639 + AT_rich Low_complexity Low_complexity 1 23 0 34 65 0 0 chr12 39206854 39206916 -104579539 + AT_rich Low_complexity Low_complexity 1 62 0 335 323 30 23 chr12 39207878 39208011 -104578444 + MIR SINE MIR 26 159 -103 394 284 269 47 chr12 39208012 39208161 -104578294 - L2 LINE L2 0 3313 3198 2453 55 0 16 chr12 39208161 39208473 -104577982 + AluY SINE Alu 1 307 -4 394 284 269 47 chr12 39208473 39208749 -104577706 - L2 LINE L2 -115 3198 2798 2032 298 135 47 chr12 39208953 39210431 -104576024 - L2 LINE L2 -560 2754 1147 435 282 34 27 chr12 39210753 39210902 -104575553 + MER5B DNA MER1_type 28 177 -1 2539 119 22 44 chr12 39211507 39211961 -104574494 + MER65A LTR ERV1 2 445 0 24 0 0 0 chr12 39212003 39212027 -104574428 + AT_rich Low_complexity Low_complexity 1 24 0 237 344 64 38 chr12 39212281 39212438 -104574017 - MIR SINE MIR -73 189 29 22 0 0 0 chr12 39213292 39213314 -104573141 + AT_rich Low_complexity Low_complexity 1 22 0 313 205 46 133 chr12 39213329 39213480 -104572975 - MIR SINE MIR 0 262 125 774 209 6 6 chr12 39213571 39213729 -104572726 + Tigger1 DNA MER2_type 1 158 -2260 * 1169 130 48 5 chr12 39213718 39213925 -104572530 + Tigger1 DNA MER2_type 2203 2418 0 6739 137 35 22 chr12 39214162 39215117 -104571338 + Tigger3b DNA MER2_type 1 976 -2052 2243 95 3 0 chr12 39215117 39215411 -104571044 - AluSc SINE Alu -14 295 1 6739 137 35 22 chr12 39215411 39215671 -104570784 + Tigger3b DNA MER2_type 976 1231 0 348 155 17 0 chr12 39215691 39215749 -104570706 + MLT2F LTR ERVL 1 59 -604 413 128 139 23 chr12 39215796 39215882 -104570573 + MLT2F LTR ERVL 565 660 -3 22 0 0 0 chr12 39216865 39216887 -104569568 + AT_rich Low_complexity Low_complexity 1 22 0 3267 149 68 102 chr12 39219203 39219403 -104567052 + LTR39 LTR ERV1 1 206 -577 2140 131 7 0 chr12 39219403 39219701 -104566754 + AluSq SINE Alu 1 300 -13 3267 149 68 102 chr12 39219701 39220221 -104566234 + LTR39 LTR ERV1 206 692 -91 2069 93 65 0 chr12 39220221 39220499 -104565956 - AluSq SINE Alu -17 296 1 3267 149 68 102 chr12 39220499 39220587 -104565868 + LTR39 LTR ERV1 692 782 -1 269 311 114 23 chr12 39220623 39220755 -104565700 + L2 LINE L2 2918 3061 -211 23 33 0 0 chr12 39220929 39220959 -104565496 + AT_rich Low_complexity Low_complexity 1 30 0 1784 176 0 3 chr12 39221025 39221314 -104565141 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 39221320 39221342 -104565113 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 208 305 125 23 chr12 39221352 39221480 -104564975 - MIR3 SINE MIR -64 144 4 198 305 32 42 chr12 39222314 39222409 -104564046 + MIR SINE MIR 20 113 -95 245 335 31 56 chr12 39223421 39223582 -104562873 - MIR SINE MIR -78 184 28 2122 138 0 0 chr12 39223825 39224121 -104562334 + AluSx SINE Alu 3 298 -14 2400 95 0 0 chr12 39224253 39224549 -104561906 + AluSx SINE Alu 3 298 -14 562 205 18 0 chr12 39226051 39226163 -104560292 + MER94 DNA DNA 1 114 -20 398 321 58 22 chr12 39226725 39226949 -104559506 + L2 LINE L2 3075 3306 -7 338 296 222 24 chr12 39227329 39227549 -104558906 + MIR SINE MIR 1 259 -3 22 0 0 0 chr12 39227946 39227968 -104558487 + AT_rich Low_complexity Low_complexity 1 22 0 2236 53 11 25 chr12 39228049 39228331 -104558124 + AluY SINE Alu 21 298 -13 36 0 0 0 chr12 39228625 39228661 -104557794 + AT_rich Low_complexity Low_complexity 1 36 0 281 268 37 0 chr12 39229120 39229202 -104557253 + MER102a DNA MER1_type 235 319 -11 2388 108 0 3 chr12 39229582 39229896 -104556559 + AluSq SINE Alu 1 313 0 2285 85 0 3 chr12 39230384 39230677 -104555778 - AluSx SINE Alu -20 292 1 499 156 0 115 chr12 39231000 39231122 -104555333 + MER2 DNA MER2_type 1 108 -237 350 100 100 0 chr12 39231123 39231183 -104555272 + MER4A LTR ERV1 33 98 -566 1609 132 5 77 chr12 39231183 39231555 -104554900 + MER4A LTR ERV1 261 664 0 510 133 64 92 chr12 39231719 39231892 -104554563 - MER33 DNA MER1_type -1 362 195 204 107 36 83 chr12 39231918 39232002 -104554453 + (TATAA)n Simple_repeat Simple_repeat 3 82 0 384 232 0 0 chr12 39232041 39232123 -104554332 - MER33 DNA MER1_type -242 82 1 303 306 26 52 chr12 39233227 39233420 -104553035 + L1ME LINE L1 5562 5749 -372 2386 71 0 0 chr12 39233626 39233921 -104552534 + AluY SINE Alu 1 295 -16 192 362 131 39 chr12 39234807 39234909 -104551546 - L2 LINE L2 -456 2858 2767 1401 166 38 25 chr12 39234909 39235229 -104551226 + MER33 DNA MER1_type 1 324 0 192 362 131 39 chr12 39235229 39235757 -104550698 - L2 LINE L2 -547 2767 2289 8045 86 6 1 chr12 39235757 39236823 -104549632 + MER11C LTR ERVK 1 1071 0 192 362 131 39 chr12 39236823 39237015 -104549440 - L2 LINE L2 -1025 2289 2116 2068 134 7 0 chr12 39237015 39237322 -104549133 + AluSp SINE Alu 1 309 -4 192 362 131 39 chr12 39237322 39237340 -104549115 - L2 LINE L2 -1198 2116 1939 794 273 32 5 chr12 39237388 39237575 -104548880 - MIR SINE MIR -52 210 19 1898 132 36 3 chr12 39238250 39238553 -104547902 - AluSq SINE Alu 0 313 1 2013 205 89 0 chr12 39239815 39240288 -104546167 + MER34 LTR ERV1 27 541 -1 321 26 0 0 chr12 39240289 39240327 -104546128 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 249 76 103 chr12 39241579 39241717 -104544738 - MIR SINE MIR -17 245 112 2242 147 39 18 chr12 39241717 39242158 -104544297 + LTR7 LTR ERV1 1 450 0 365 249 76 103 chr12 39242158 39242204 -104544251 - MIR SINE MIR -150 112 66 2247 72 0 44 chr12 39242354 39242672 -104543783 - AluY SINE Alu -7 304 1 1551 194 14 28 chr12 39243688 39243977 -104542478 - AluJo SINE Alu -27 285 1 192 341 133 7 chr12 39246464 39246599 -104539856 + MIR3 SINE MIR 42 193 -15 884 265 215 19 chr12 39246664 39247139 -104539316 + L2 LINE L2 1447 2014 -1300 2346 106 3 0 chr12 39347698 39348009 -104438446 - AluSx SINE Alu 0 312 1 7538 34 0 0 chr12 39349844 39351503 -104434952 + L1PA4 LINE L1 4495 6155 0 2199 111 0 3 chr12 39352327 39352624 -104433831 + AluSx SINE Alu 1 296 -16 4574 121 25 1 chr12 39353248 39354022 -104432433 + Tigger1 DNA MER2_type 1421 2212 -206 2184 151 23 25 chr12 39355177 39355574 -104430881 + MSTD LTR MaLR 1 396 0 34 55 0 0 chr12 39356199 39356254 -104430201 + AT_rich Low_complexity Low_complexity 1 55 0 372 301 108 15 chr12 39356494 39356697 -104429758 - L1ME4a LINE L1 -53 6068 5847 1969 152 7 0 chr12 39356707 39356997 -104429458 + AluSx SINE Alu 7 298 -14 565 189 106 53 chr12 39358565 39358902 -104427553 - MLT1A2 LTR MaLR 0 457 4 1335 235 82 22 chr12 39359390 39359841 -104426614 - L1ME1 LINE L1 -4 6162 5685 395 297 27 0 chr12 39359884 39359995 -104426460 + MIR3 SINE MIR 85 198 -10 1242 251 74 20 chr12 39360240 39360686 -104425769 - LTR38 LTR ERV1 0 556 87 2221 106 3 0 chr12 39360723 39361034 -104425421 - AluSq SINE Alu -1 312 1 221 306 148 79 chr12 39361329 39361721 -104424734 - L2 LINE L2 -545 2769 2351 227 286 0 0 chr12 39362079 39362142 -104424313 + MIR SINE MIR 200 262 0 300 101 14 29 chr12 39363635 39363704 -104422751 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 2174 100 0 4 chr12 39364556 39364860 -104421595 + AluSg1 SINE Alu 1 303 0 842 159 0 0 chr12 39365005 39365137 -104421318 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr12 39365276 39365297 -104421158 + AT_rich Low_complexity Low_complexity 1 21 0 331 277 245 16 chr12 39365641 39365825 -104420630 + MIR SINE MIR 25 250 -12 22 35 0 0 chr12 39366078 39366107 -104420348 + AT_rich Low_complexity Low_complexity 1 29 0 354 98 0 0 chr12 39367369 39367420 -104419035 + (TG)n Simple_repeat Simple_repeat 2 52 0 300 222 62 0 chr12 39367982 39368063 -104418392 - MLT1J LTR MaLR -108 403 318 2181 147 61 20 chr12 39368128 39368537 -104417918 - MSTB1 LTR MaLR 0 432 7 376 285 186 10 chr12 39368544 39368737 -104417718 - MLT1J LTR MaLR -282 229 3 387 0 0 0 chr12 39369388 39369431 -104417024 + (TG)n Simple_repeat Simple_repeat 2 44 0 705 274 194 15 chr12 39370126 39370528 -104415927 - MLT1J LTR MaLR -37 474 1 183 315 41 27 chr12 39371386 39371459 -104414996 + L2 LINE L2 2982 3055 -258 1635 258 102 15 chr12 39371459 39371997 -104414458 + MLT1E LTR MaLR 1 585 -8 304 264 146 35 chr12 39372616 39372760 -104413695 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr12 39372780 39372805 -104413650 + AT_rich Low_complexity Low_complexity 1 25 0 1002 148 16 44 chr12 39372811 39372994 -104413461 - AluJo SINE Alu -12 300 123 21 0 0 0 chr12 39374011 39374032 -104412423 + AT_rich Low_complexity Low_complexity 1 21 0 209 223 124 83 chr12 39374211 39374332 -104412123 - L3 LINE CR1 -1 1576 1451 375 250 102 81 chr12 39374580 39374816 -104411639 - MLT1E1 LTR MaLR -218 436 196 236 159 0 23 chr12 39374894 39374938 -104411517 - MLT1E1 LTR MaLR -611 43 1 2381 70 3 10 chr12 39375299 39375601 -104410854 - AluY SINE Alu -11 300 1 212 68 0 68 chr12 39375868 39375912 -104410543 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 710 211 0 8 chr12 39375916 39376049 -104410406 - FLAM_A SINE Alu 0 133 2 2070 102 7 10 chr12 39376357 39376660 -104409795 + AluSx SINE Alu 1 302 -10 902 310 46 3 chr12 39376842 39377126 -104409329 - LTR33 LTR ERVL -223 298 3 2066 129 7 0 chr12 39377280 39377574 -104408881 - AluSg SINE Alu -14 296 1 24 32 0 0 chr12 39380207 39380238 -104406217 + AT_rich Low_complexity Low_complexity 1 31 0 213 200 40 0 chr12 39380395 39380445 -104406010 + (TATG)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr12 39380740 39380762 -104405693 + AT_rich Low_complexity Low_complexity 1 22 0 270 203 159 0 chr12 39380764 39380833 -104405622 - MIR SINE MIR -120 142 63 1300 249 70 38 chr12 39380840 39381286 -104405169 - LTR40c LTR ERVL -5 460 1 578 304 100 7 chr12 39383451 39383721 -104402734 - L2 LINE L2 -553 2761 2467 205 275 225 35 chr12 39384076 39384218 -104402237 - MIR3 SINE MIR -17 191 23 1789 134 44 13 chr12 39384666 39384964 -104401491 - AluSx SINE Alu -5 307 1 321 232 31 88 chr12 39385344 39385394 -104401061 + Charlie7 DNA MER1_type 2430 2481 -131 1998 159 6 37 chr12 39385394 39385747 -104400708 - MER2 DNA MER2_type 0 344 3 321 232 31 88 chr12 39385747 39385890 -104400565 + Charlie7 DNA MER1_type 2481 2612 0 1782 158 0 7 chr12 39387155 39387434 -104399021 - AluSx SINE Alu -22 290 14 1827 163 23 10 chr12 39390590 39390896 -104395559 - AluJb SINE Alu -2 310 1 2516 189 49 79 chr12 39391264 39391973 -104394482 - LTR8 LTR ERV1 0 691 4 2062 144 0 0 chr12 39392591 39392889 -104393566 - AluSx SINE Alu -14 298 1 440 221 87 16 chr12 39393683 39393810 -104392645 - MIR SINE MIR -56 206 71 2221 146 100 3 chr12 39394345 39394735 -104391720 - MSTA LTR MaLR 0 428 1 2300 55 55 3 chr12 39394819 39395110 -104391345 + AluY SINE Alu 1 306 -5 275 233 42 100 chr12 39395867 39395934 -104390521 - L1ME4a LINE L1 -29 6092 6033 2102 118 7 10 chr12 39395934 39396231 -104390224 + AluSx SINE Alu 1 296 -16 275 233 42 100 chr12 39396231 39396283 -104390172 - L1ME4a LINE L1 -88 6033 5980 25 31 0 0 chr12 39396312 39396344 -104390111 + AT_rich Low_complexity Low_complexity 1 32 0 217 214 18 18 chr12 39396747 39396803 -104389652 - MER5C DNA MER1_type -201 123 68 224 273 18 0 chr12 39396911 39396966 -104389489 - MER5C DNA MER1_type -267 57 2 23 33 0 0 chr12 39397222 39397252 -104389203 + AT_rich Low_complexity Low_complexity 1 30 0 191 274 96 0 chr12 39397409 39397482 -104388973 - L2 LINE L2 -614 2700 2621 1650 190 3 0 chr12 39398680 39398991 -104387464 - AluSx SINE Alu 0 312 1 2282 117 0 0 chr12 39399537 39399845 -104386610 - AluSq SINE Alu -5 308 1 774 173 0 15 chr12 39399928 39400061 -104386394 - FLAM_C SINE Alu -2 131 1 361 250 243 29 chr12 39400061 39400195 -104386260 + MIR SINE MIR 22 185 -77 215 295 0 39 chr12 39400233 39400311 -104386144 + CT-rich Low_complexity Low_complexity 1 75 0 513 207 107 0 chr12 39400448 39400569 -104385886 + MIR SINE MIR 123 256 -6 2267 88 0 0 chr12 39401156 39401440 -104385015 - AluSc SINE Alu -14 295 12 21 0 0 0 chr12 39401557 39401578 -104384877 + AT_rich Low_complexity Low_complexity 1 21 0 2075 127 7 3 chr12 39402169 39402468 -104383987 + AluSx SINE Alu 1 300 -12 1994 131 6 34 chr12 39403216 39403537 -104382918 - AluSx SINE Alu 0 312 1 189 0 0 0 chr12 39404174 39404195 -104382260 + (T)n Simple_repeat Simple_repeat 1 21 0 395 336 75 0 chr12 39404279 39404425 -104382030 + MIR SINE MIR 20 176 -86 190 324 99 9 chr12 39404563 39404674 -104381781 + L2 LINE L2 3165 3285 -28 1797 310 176 25 chr12 39404742 39406100 -104380355 - L2 LINE L2 0 3313 1741 2353 90 0 10 chr12 39406115 39406426 -104380029 - AluSc SINE Alu -1 308 1 1028 76 8 0 chr12 39406429 39406560 -104379895 - AluSp SINE Alu -181 132 1 581 326 97 28 chr12 39406598 39406960 -104379495 - L2 LINE L2 -2569 745 359 830 216 113 30 chr12 39407016 39407247 -104379208 - MIR SINE MIR -11 251 2 312 367 35 6 chr12 39407247 39407414 -104379041 - L2 LINE L2 -3019 295 124 1575 178 7 18 chr12 39407867 39408143 -104378312 + AluJb SINE Alu 1 273 -39 465 166 35 0 chr12 39408246 39408415 -104378040 + (TA)n Simple_repeat Simple_repeat 1 175 0 2042 149 0 0 chr12 39408415 39408717 -104377738 - AluSx SINE Alu -10 302 1 1959 150 8 42 chr12 39408753 39409112 -104377343 - MER7A DNA MER2_type 0 346 2 246 205 39 126 chr12 39409125 39409252 -104377203 - L1ME LINE L1 -204 5917 5802 225 0 0 0 chr12 39410028 39410053 -104376402 + (T)n Simple_repeat Simple_repeat 1 25 0 436 321 60 24 chr12 39410727 39410895 -104375560 + MIR3 SINE MIR 30 203 -5 245 175 0 0 chr12 39411226 39411266 -104375189 + L2 LINE L2 3217 3256 -16 1631 177 50 0 chr12 39411920 39412202 -104374253 - AluJb SINE Alu -16 296 1 30 0 0 0 chr12 39412323 39412353 -104374102 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 39413184 39413205 -104373250 + AT_rich Low_complexity Low_complexity 1 21 0 269 219 0 62 chr12 39413205 39413301 -104373154 - L1MC4 LINE L1 -1339 6703 6614 270 176 0 0 chr12 39413302 39413353 -104373102 + (CATATA)n Simple_repeat Simple_repeat 5 55 0 1035 152 0 0 chr12 39413353 39413531 -104372924 + (TA)n Simple_repeat Simple_repeat 2 179 0 2194 95 3 0 chr12 39413531 39413814 -104372641 - AluSx SINE Alu -28 284 1 450 264 40 85 chr12 39414198 39414399 -104372056 - L2 LINE L2 -299 3014 2823 2395 49 0 55 chr12 39414571 39414897 -104371558 + AluY SINE Alu 1 308 -3 241 308 31 0 chr12 39415284 39415349 -104371106 + L2 LINE L2 3241 3307 -6 679 198 96 40 chr12 39416331 39416508 -104369947 - AluJo SINE Alu -7 305 119 1859 171 3 7 chr12 39417392 39417691 -104368764 - AluJb SINE Alu -12 300 3 1872 121 7 34 chr12 39417984 39418282 -104368173 + AluSx SINE Alu 2 291 -21 1817 164 0 32 chr12 39418291 39418602 -104367853 + AluJo SINE Alu 1 301 -11 402 271 181 8 chr12 39418708 39418841 -104367614 - MER5A DNA MER1_type -7 182 27 207 156 0 0 chr12 39419195 39419227 -104367228 + CT-rich Low_complexity Low_complexity 2 33 0 1143 264 28 5 chr12 39419342 39419729 -104366726 - L1ME LINE L1 -3301 3656 3261 1929 185 98 20 chr12 39419764 39420003 -104366452 - MLT1D LTR MaLR 0 505 286 2196 111 3 0 chr12 39420003 39420292 -104366163 + AluSx SINE Alu 7 296 -16 1929 185 98 20 chr12 39420292 39420500 -104365955 - MLT1D LTR MaLR -219 286 23 245 159 0 0 chr12 39420534 39420578 -104365877 - L1ME LINE L1 -3733 3224 3181 1361 220 20 30 chr12 39420586 39420890 -104365565 - AluJb SINE Alu -11 301 1 500 248 78 105 chr12 39420900 39420992 -104365463 - L1ME LINE L1 -4886 2071 1978 1820 141 0 50 chr12 39420992 39421311 -104365144 + AluJo SINE Alu 1 303 -9 500 248 78 105 chr12 39421311 39421628 -104364827 - L1ME LINE L1 -4979 1978 1675 299 204 0 19 chr12 39421628 39421682 -104364773 + MER1B DNA MER1_type 1 53 -284 1966 139 12 40 chr12 39421682 39422005 -104364450 + MER1B DNA MER1_type 26 339 0 334 313 62 22 chr12 39422039 39422218 -104364237 - L1ME LINE L1 -5334 1525 1340 557 237 9 0 chr12 39422456 39422570 -104363885 + MIR SINE MIR 79 193 -69 1092 246 100 126 chr12 39422609 39423362 -104363093 - L2 LINE L2 -1370 1944 1212 26 0 0 0 chr12 39424732 39424758 -104361697 + AT_rich Low_complexity Low_complexity 1 26 0 2100 121 13 0 chr12 39424758 39425056 -104361399 - AluSq SINE Alu -11 302 1 187 268 0 0 chr12 39425824 39425865 -104360590 - MER5A DNA MER1_type 0 189 149 660 234 0 72 chr12 39425866 39426033 -104360422 + FAM SINE Alu 2 156 -19 245 252 252 10 chr12 39426059 39426162 -104360293 + MER5A DNA MER1_type 40 167 -22 534 222 70 65 chr12 39426447 39426632 -104359823 - MIR SINE MIR -57 205 20 405 283 48 48 chr12 39426814 39426959 -104359496 + L2 LINE L2 3128 3272 0 1599 107 27 0 chr12 39427262 39427486 -104358969 + MER30 DNA MER1_type 1 230 0 33 0 0 0 chr12 39427544 39427577 -104358878 + AT_rich Low_complexity Low_complexity 1 33 0 545 181 0 38 chr12 39427597 39427702 -104358753 - FLAM_A SINE Alu -32 110 10 216 361 74 25 chr12 39428996 39429118 -104357337 + L2 LINE L2 3133 3260 -12 530 91 6 9 chr12 39429441 39429540 -104356915 - L1PA11 LINE L1 -302 5849 5752 2203 98 9 0 chr12 39429540 39429855 -104356600 + L1PA11 LINE L1 5855 6173 -1 1170 124 9 52 chr12 39430720 39430930 -104355525 + MER2 DNA MER2_type 6 206 -139 1338 172 26 4 chr12 39430951 39431183 -104355272 - AluJb SINE Alu -73 239 3 22 56 0 0 chr12 39431194 39431230 -104355225 + AT_rich Low_complexity Low_complexity 1 36 0 427 203 0 0 chr12 39431243 39431317 -104355138 + MER2 DNA MER2_type 272 345 0 192 179 0 71 chr12 39431482 39431538 -104354917 + L2 LINE L2 2930 2981 -332 1336 169 0 5 chr12 39431596 39431809 -104354646 - AluJo SINE Alu -100 212 1 276 155 42 0 chr12 39432206 39432277 -104354178 + (TA)n Simple_repeat Simple_repeat 1 74 0 568 294 20 56 chr12 39432975 39433172 -104353283 + MIR SINE MIR 26 215 -47 352 268 165 19 chr12 39433491 39433812 -104352643 - L1ME4a LINE L1 -34 6087 5720 244 321 97 36 chr12 39433813 39434009 -104352446 - MIR SINE MIR -20 242 35 180 152 0 0 chr12 39434107 39434140 -104352315 + GA-rich Low_complexity Low_complexity 2 34 0 21 57 0 0 chr12 39434429 39434464 -104351991 + AT_rich Low_complexity Low_complexity 1 35 0 710 165 0 0 chr12 39434660 39434775 -104351680 + FLAM_C SINE Alu 1 115 -18 182 300 29 43 chr12 39435054 39435124 -104351331 + MIR3 SINE MIR 139 207 -1 1223 150 12 12 chr12 39435723 39435963 -104350492 + L1MB3 LINE L1 5934 6173 -10 21 0 0 0 chr12 39435978 39435999 -104350456 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 39436438 39436474 -104349981 + AT_rich Low_complexity Low_complexity 1 36 0 347 313 72 53 chr12 39438259 39438524 -104347931 + MARNA DNA Mariner 260 529 -57 29 0 0 0 chr12 39442464 39442493 -104343962 + AT_rich Low_complexity Low_complexity 1 29 0 537 242 157 7 chr12 39442850 39443003 -104343452 - MER5A DNA MER1_type -6 183 8 294 197 318 23 chr12 39443007 39443139 -104343316 + MIR3 SINE MIR 33 203 -5 486 347 40 0 chr12 39444116 39444266 -104342189 - L2 LINE L2 0 3272 3117 35 33 0 17 chr12 39444575 39444616 -104341839 + AT_rich Low_complexity Low_complexity 1 42 -17 1799 122 8 0 chr12 39444616 39444871 -104341584 - AluSg SINE Alu -21 289 33 35 33 0 17 chr12 39444871 39444889 -104341566 + AT_rich Low_complexity Low_complexity 42 59 0 219 114 0 0 chr12 39446389 39446424 -104340031 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2048 105 10 7 chr12 39448439 39448735 -104337720 - Tigger3b DNA MER2_type -1 1230 934 248 51 0 0 chr12 39448733 39448772 -104337683 - AluSx SINE Alu -4 296 258 * 1519 139 0 0 chr12 39448772 39448988 -104337467 - AluSx SINE Alu -96 216 1 933 143 0 0 chr12 39449006 39449153 -104337302 + Tigger1 DNA MER2_type 1 147 -2271 * 1295 118 14 27 chr12 39449151 39449371 -104337084 + Tigger1 DNA MER2_type 2202 2418 0 * 5023 153 39 8 chr12 39449371 39450274 -104336181 - Tigger3b DNA MER2_type -299 932 1 653 239 33 0 chr12 39450357 39450520 -104335935 - MIR SINE MIR -33 229 61 556 266 53 26 chr12 39451277 39451503 -104334952 + L1ME LINE L1 5557 5790 -331 653 173 0 60 chr12 39451761 39451894 -104334561 + FLAM_C SINE Alu 2 126 -7 2092 146 98 26 chr12 39452296 39452550 -104333905 - L1MB7 LINE L1 -20 6164 5867 2045 103 52 3 chr12 39452550 39452841 -104333614 - AluSx SINE Alu -7 305 1 2092 146 98 26 chr12 39452841 39453003 -104333452 - L1MB7 LINE L1 -317 5867 5718 266 304 88 14 chr12 39453423 39453571 -104332884 - L2 LINE L2 0 3313 3155 210 321 0 19 chr12 39453669 39453722 -104332733 - MIR SINE MIR -164 98 47 2139 126 3 0 chr12 39453722 39454064 -104332391 - AluSx SINE Alu 0 343 1 22 0 0 0 chr12 39454083 39454105 -104332350 + AT_rich Low_complexity Low_complexity 1 22 0 284 231 15 0 chr12 39454387 39454452 -104332003 + MIR SINE MIR 180 245 -17 421 273 36 72 chr12 39456810 39457004 -104329451 - MIR SINE MIR -70 192 6 202 247 21 0 chr12 39458335 39458428 -104328027 + CT-rich Low_complexity Low_complexity 4 98 0 275 244 0 11 chr12 39458460 39458550 -104327905 + CT-rich Low_complexity Low_complexity 2 90 0 478 330 30 97 chr12 39458881 39459345 -104327110 - L2 LINE L2 -3 3269 2837 1561 249 86 25 chr12 39459418 39459940 -104326515 - MER68 LTR ERV1 0 562 9 25 0 0 0 chr12 39460769 39460794 -104325661 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 39460865 39460895 -104325560 + AT_rich Low_complexity Low_complexity 1 30 0 23 92 0 0 chr12 39461888 39461953 -104324502 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr12 39462316 39462339 -104324116 + AT_rich Low_complexity Low_complexity 1 23 0 2073 91 7 39 chr12 39462343 39462650 -104323805 + AluY SINE Alu 1 297 -14 562 276 13 13 chr12 39463239 39463395 -104323060 - Charlie8 DNA MER1_type -2170 247 92 2338 81 0 0 chr12 39463859 39464155 -104322300 - AluY SINE Alu -15 296 1 248 224 106 35 chr12 39464220 39464305 -104322150 - L2 LINE L2 -36 3277 3187 203 88 29 0 chr12 39464628 39464662 -104321793 + (TTC)n Simple_repeat Simple_repeat 2 36 0 836 186 157 30 chr12 39464681 39464912 -104321543 + MIR SINE MIR 1 262 0 25 0 0 0 chr12 39465396 39465421 -104321034 + AT_rich Low_complexity Low_complexity 1 25 0 254 203 0 16 chr12 39466008 39466072 -104320383 + (TG)n Simple_repeat Simple_repeat 2 64 0 2222 121 7 0 chr12 39467023 39467330 -104319125 - AluSx SINE Alu -3 309 1 795 277 163 27 chr12 39468336 39468853 -104317602 - Charlie7 DNA MER1_type -1940 672 86 2430 44 3 3 chr12 39468987 39469283 -104317172 - AluY SINE Alu -15 296 1 221 66 58 0 chr12 39469442 39469480 -104316975 + MIR SINE MIR 105 145 -63 620 309 57 68 chr12 39473862 39474231 -104312224 - L3 LINE CR1 -219 1358 994 408 344 179 19 chr12 39474377 39474845 -104311610 - L3 LINE CR1 -975 602 60 3546 84 34 4 chr12 39475313 39475848 -104310607 - L1MA2 LINE L1 0 6304 5754 22 35 0 0 chr12 39476601 39476630 -104309825 + AT_rich Low_complexity Low_complexity 1 29 0 610 329 32 20 chr12 39476901 39477147 -104309308 - MIR SINE MIR -1 261 13 21 0 0 0 chr12 39477767 39477788 -104308667 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 39478130 39478153 -104308302 + AT_rich Low_complexity Low_complexity 1 23 0 2089 96 3 64 chr12 39479581 39479894 -104306561 - AluSx SINE Alu -16 296 3 283 288 99 27 chr12 39480064 39480175 -104306280 - L2 LINE L2 -5 3267 3149 26 0 0 0 chr12 39480793 39480819 -104305636 + AT_rich Low_complexity Low_complexity 1 26 0 208 242 30 91 chr12 39481052 39481151 -104305304 - L2 LINE L2 0 3313 3221 525 180 0 0 chr12 39481155 39481244 -104305211 - AluJ/FLAM SINE Alu -223 89 1 233 322 11 0 chr12 39482003 39482090 -104304365 + L1MC4 LINE L1 6618 6705 -1337 906 174 7 7 chr12 39482443 39482592 -104303863 + FAM SINE Alu 10 158 -27 2245 111 0 0 chr12 39482593 39482899 -104303556 - AluSx SINE Alu -6 306 1 227 263 0 0 chr12 39483241 39483298 -104303157 + T-rich Low_complexity Low_complexity 4 60 0 285 301 110 72 chr12 39483491 39483727 -104302728 - L2 LINE L2 -943 2371 2127 200 160 10 90 chr12 39484476 39484524 -104301931 + A-rich Low_complexity Low_complexity 2 40 -53 866 198 24 0 chr12 39484524 39484691 -104301764 + FAM SINE Alu 5 175 0 200 160 10 90 chr12 39484691 39484742 -104301713 + A-rich Low_complexity Low_complexity 39 93 0 684 236 157 21 chr12 39486955 39487235 -104299220 - L2 LINE L2 0 3313 2996 5899 102 13 4 chr12 39487863 39488848 -104297607 - L1PA14 LINE L1 -1 6160 5165 732 212 0 20 chr12 39488983 39489129 -104297326 - MIR SINE MIR -5 257 115 1415 306 65 28 chr12 39489146 39489993 -104296462 - L1MEc LINE L1 -5484 912 35 302 149 0 0 chr12 39489996 39490043 -104296412 + L2 LINE L2 2328 2374 -940 29 47 0 0 chr12 39490078 39490121 -104296334 + AT_rich Low_complexity Low_complexity 1 43 0 4483 16 2 0 chr12 39490249 39490763 -104295692 - L1PA3 LINE L1 -17 6138 5624 1603 302 89 23 chr12 39490763 39491569 -104294886 + L2 LINE L2 2358 3224 -89 23 33 0 0 chr12 39491572 39491602 -104294853 + AT_rich Low_complexity Low_complexity 1 30 0 2322 81 0 3 chr12 39491613 39491910 -104294545 + AluY SINE Alu 1 296 -15 198 0 0 0 chr12 39491934 39491956 -104294499 + (T)n Simple_repeat Simple_repeat 1 22 0 2061 96 27 23 chr12 39491988 39492289 -104294166 + AluSc SINE Alu 5 306 -3 285 189 57 0 chr12 39492295 39492348 -104294107 + L2 LINE L2 3214 3269 -3 205 299 279 7 chr12 39492423 39492577 -104293878 + MIR3 SINE MIR 1 196 -12 624 243 133 26 chr12 39493076 39493302 -104293153 + MIR SINE MIR 13 262 0 7222 44 6 4 chr12 39494000 39494911 -104291544 - L1P LINE L1 -1926 4220 3309 * 20974 64 1 0 chr12 39494879 39497532 -104288923 - L1P LINE L1 -3489 2657 4 272 91 91 0 chr12 39498491 39498535 -104287920 - MLT2C1 LTR ERVL 0 397 350 246 62 0 0 chr12 39498542 39498574 -104287881 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 223 45 0 chr12 39498637 39498749 -104287706 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 1368 232 121 49 chr12 39498752 39499200 -104287255 - MLT2B1 LTR ERVL -40 480 1 27 0 0 0 chr12 39499278 39499305 -104287150 + AT_rich Low_complexity Low_complexity 1 27 0 2356 121 19 22 chr12 39499322 39499687 -104286768 + THE1B LTR MaLR 1 364 0 425 343 130 11 chr12 39499777 39500240 -104286215 - HAL1 LINE L1 -585 1922 1405 444 294 80 46 chr12 39500686 39501124 -104285331 - HAL1 LINE L1 -1254 1253 801 1795 244 30 8 chr12 39501805 39502206 -104284249 + L1M3c LINE L1 11 420 -5721 185 279 261 9 chr12 39503889 39504000 -104282455 - L2 LINE L2 0 3313 3175 * 186 279 27 45 chr12 39503994 39504105 -104282350 - MIR SINE MIR 0 262 154 204 129 0 0 chr12 39504919 39504950 -104281505 - MIR SINE MIR 0 262 232 292 171 0 79 chr12 39504993 39505069 -104281386 - HsTC2 DNA Tc2 -1828 70 1 245 265 71 0 chr12 39505547 39505645 -104280810 + LTR67 LTR ERVL 434 538 -19 8842 108 22 2 chr12 39506684 39507935 -104278520 - HSMAR1 DNA Mariner -2 1285 10 826 287 51 69 chr12 39508189 39508601 -104277854 + MLT1J LTR MaLR 1 347 -103 694 238 114 21 chr12 39508601 39508794 -104277661 - MER58C DNA MER1_type -4 211 1 826 287 51 69 chr12 39508794 39508874 -104277581 + MLT1J LTR MaLR 347 427 -23 365 273 50 0 chr12 39509014 39509113 -104277342 + MER91B DNA MER1_type 27 130 -60 31 0 0 0 chr12 39509446 39509477 -104276978 + AT_rich Low_complexity Low_complexity 1 31 0 2341 35 42 3 chr12 39509796 39510080 -104276375 + AluY SINE Alu 1 295 -16 1078 306 87 16 chr12 39510129 39510633 -104275822 + LTR67 LTR ERVL 2 541 -16 612 210 119 45 chr12 39511501 39511677 -104274778 - MER5A DNA MER1_type 0 189 1 258 320 25 0 chr12 39511978 39512100 -104274355 + MLT1L LTR MaLR 491 615 0 531 264 23 8 chr12 39513230 39513359 -104273096 + L2 LINE L2 3136 3266 -6 7103 201 63 14 chr12 39514203 39515947 -104270508 - L1MCa LINE L1 -2579 3847 2190 1629 177 50 3 chr12 39515947 39516230 -104270225 - AluSx SINE Alu -16 296 1 7103 201 63 14 chr12 39516230 39516307 -104270148 - L1MCa LINE L1 -4236 2190 2118 1972 116 0 79 chr12 39516307 39516625 -104269830 - AluSc SINE Alu -14 295 3 7103 201 63 14 chr12 39516625 39518283 -104268172 - L1MCa LINE L1 -4308 2118 104 345 199 53 93 chr12 39518350 39518501 -104267954 - MER112 DNA MER1_type -97 163 19 1620 185 37 16 chr12 39519731 39520110 -104266345 - Charlie5 DNA MER1_type 0 2624 2238 718 167 0 0 chr12 39520122 39520242 -104266213 - MER3 DNA MER1_type -42 167 48 24 32 0 0 chr12 39521015 39521046 -104265409 + AT_rich Low_complexity Low_complexity 1 31 0 319 347 71 34 chr12 39521905 39522144 -104264311 - L2 LINE L2 -514 2800 2553 198 0 0 0 chr12 39522593 39522615 -104263840 + (A)n Simple_repeat Simple_repeat 1 22 0 427 321 22 0 chr12 39523719 39523853 -104262602 + MIR3 SINE MIR 67 203 -5 237 224 105 13 chr12 39524025 39524101 -104262354 - MIR3 SINE MIR -8 200 118 514 282 186 30 chr12 39524132 39524433 -104262022 - L2 LINE L2 -42 3271 2924 248 160 0 40 chr12 39524482 39524532 -104261923 - L2 LINE L2 0 3313 3266 25 51 0 0 chr12 39524703 39524742 -104261713 + AT_rich Low_complexity Low_complexity 1 39 0 3613 166 39 79 chr12 39525472 39526298 -104260157 - MER54B LTR ERVL 0 793 1 181 291 43 92 chr12 39526408 39526549 -104259906 - L2 LINE L2 -303 2969 2836 570 282 39 6 chr12 39526747 39526928 -104259527 - Charlie8 DNA MER1_type -2184 233 47 317 379 115 14 chr12 39526955 39527459 -104258996 - L2 LINE L2 -553 2761 2207 214 310 14 0 chr12 39527454 39527525 -104258930 - L2 LINE L2 0 3272 3201 * 801 144 0 16 chr12 39527634 39527759 -104258696 - Tigger1 DNA MER2_type 0 2418 2296 271 30 0 0 chr12 39527836 39527869 -104258586 - Tigger1 DNA MER2_type -125 2293 2261 657 122 73 0 chr12 39527908 39528031 -104258424 - Tigger1 DNA MER2_type -121 2297 2166 882 126 0 46 chr12 39728109 39728283 -104058172 - AluSq SINE Alu -119 194 29 780 203 0 18 chr12 39728287 39728450 -104058005 + AluSq SINE Alu 49 208 -105 1112 129 47 0 chr12 39729092 39729263 -104057192 + AluJo SINE Alu 121 299 -13 359 257 105 0 chr12 39729263 39729368 -104057087 - L2 LINE L2 -300 3013 2898 935 114 0 0 chr12 39729378 39729509 -104056946 + AluSg1 SINE Alu 1 131 -178 2207 98 10 3 chr12 39729511 39729817 -104056638 + AluSg SINE Alu 1 308 -2 1797 132 0 75 chr12 39729834 39730188 -104056267 + AluJo SINE Alu 3 331 0 1860 137 3 29 chr12 39731982 39732177 -104054278 + AluSx SINE Alu 3 189 -123 2313 83 0 3 chr12 39732177 39732478 -104053977 - AluY SINE Alu -11 300 1 1860 137 3 29 chr12 39732478 39732588 -104053867 + AluSx SINE Alu 189 300 -12 824 309 68 14 chr12 39732698 39732846 -104053609 + L2 LINE L2 2925 3064 -249 2275 94 7 0 chr12 39732846 39733153 -104053302 + AluSx SINE Alu 1 309 -3 824 309 68 14 chr12 39733153 39733373 -104053082 + L2 LINE L2 3064 3313 0 452 325 147 0 chr12 39733345 39733576 -104052879 - L2 LINE L2 -365 2949 2685 * 555 220 73 0 chr12 39734549 39734658 -104051797 + FLAM_C SINE Alu 1 117 -26 188 35 35 0 chr12 39734658 39734687 -104051768 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2141 114 3 0 chr12 39734691 39734997 -104051458 + AluSx SINE Alu 1 307 -5 2187 91 0 24 chr12 39735329 39735627 -104050828 + AluSx SINE Alu 10 300 -12 2318 84 3 0 chr12 39735629 39735925 -104050530 + AluSp SINE Alu 3 299 -14 1498 174 7 48 chr12 39735926 39736220 -104050235 - AluJo SINE Alu -25 287 6 365 263 11 0 chr12 39736239 39736334 -104050121 - MIR SINE MIR -14 248 153 2074 106 0 23 chr12 39736687 39736988 -104049467 - AluSx SINE Alu -14 298 5 2092 102 3 3 chr12 39737013 39737307 -104049148 - AluSx SINE Alu -18 294 1 2034 116 3 26 chr12 39737310 39737613 -104048842 - AluSx SINE Alu -16 296 1 2009 148 0 13 chr12 39737613 39737924 -104048531 - AluJo SINE Alu -5 307 1 431 286 30 21 chr12 39737956 39738108 -104048347 - MIR SINE MIR -27 181 31 2098 124 0 0 chr12 39738115 39738405 -104048050 - AluSx SINE Alu -16 296 7 746 224 64 0 chr12 39738508 39738664 -104047791 + FRAM SINE Alu 1 158 -18 1364 102 10 29 chr12 39738668 39738873 -104047582 + AluSc SINE Alu 102 302 -7 2400 81 3 0 chr12 39738873 39739183 -104047272 + AluY SINE Alu 1 311 0 2415 52 0 23 chr12 39739190 39739499 -104046956 + AluY SINE Alu 1 302 -9 405 259 86 0 chr12 39739504 39739585 -104046870 + FLAM_A SINE Alu 1 88 -54 1848 154 7 7 chr12 39739585 39739878 -104046577 + AluJo SINE Alu 1 293 -19 822 117 0 80 chr12 39739880 39739966 -104046489 + AluSq/x SINE Alu 1 74 -238 2337 66 7 7 chr12 39739966 39740271 -104046184 + AluY SINE Alu 1 305 -6 822 117 0 80 chr12 39740271 39740321 -104046134 + AluSq/x SINE Alu 74 126 -186 1117 135 5 42 chr12 39740321 39740365 -104046090 + AluSg/x SINE Alu 97 141 -165 2304 53 7 13 chr12 39740365 39740665 -104045790 + AluY SINE Alu 1 298 -13 1117 135 5 42 chr12 39740665 39740837 -104045618 + AluSg/x SINE Alu 141 306 0 903 209 0 0 chr12 39740844 39740997 -104045458 + FRAM SINE Alu 4 156 -10 2270 66 0 26 chr12 39741084 39741389 -104045066 - AluSg SINE Alu -12 298 2 344 160 66 75 chr12 39741392 39741498 -104044957 - MIR SINE MIR -65 197 93 597 184 61 9 chr12 39742518 39742627 -104043828 + AluJo/FLAM SINE Alu 1 116 -192 1691 137 38 0 chr12 39742627 39742890 -104043565 - AluSx SINE Alu -39 273 1 860 170 0 108 chr12 39743127 39743212 -104043243 + FRAM SINE Alu 4 97 -215 1804 129 93 0 chr12 39743212 39743490 -104042965 + AluSq SINE Alu 1 304 -9 860 170 0 108 chr12 39743490 39743550 -104042905 + FRAM SINE Alu 97 126 -186 2278 103 0 0 chr12 39743550 39743852 -104042603 - AluSx SINE Alu -5 307 6 860 170 0 108 chr12 39743852 39743899 -104042556 + FRAM SINE Alu 126 176 0 1823 112 3 112 chr12 39744713 39744883 -104041572 - AluJo SINE Alu 0 302 115 2153 99 3 3 chr12 39744883 39745176 -104041279 - AluSg SINE Alu -17 293 1 272 0 79 0 chr12 39745176 39745214 -104041241 + T-rich Low_complexity Low_complexity 2 42 0 2072 103 7 0 chr12 39745214 39745496 -104040959 - AluSx SINE Alu -28 284 1 2081 104 3 7 chr12 39745502 39745689 -104040766 - AluSq SINE Alu 0 320 133 2170 93 3 0 chr12 39745689 39745980 -104040475 - AluSp SINE Alu -21 292 1 2081 104 3 7 chr12 39745980 39746113 -104040342 - AluSq SINE Alu -187 133 1 2006 117 7 0 chr12 39746113 39746445 -104040010 - AluSx SINE Alu 0 312 8 1903 154 0 10 chr12 39746454 39746765 -104039690 - AluJb SINE Alu -4 308 1 1823 112 3 112 chr12 39746765 39746912 -104039543 - AluJo SINE Alu -197 105 1 2077 93 31 0 chr12 39747943 39748232 -104038223 - AluSp SINE Alu -15 298 1 1612 116 0 0 chr12 39748258 39748482 -104037973 - AluSx SINE Alu -88 224 1 1712 171 20 13 chr12 39748532 39748837 -104037618 - AluJo SINE Alu 0 312 6 2274 79 0 28 chr12 39748987 39749304 -104037151 + AluY SINE Alu 1 308 -3 1839 174 0 6 chr12 39749324 39749635 -104036820 + AluSx SINE Alu 1 309 -3 865 196 6 6 chr12 39749647 39749805 -104036650 + FRAM SINE Alu 2 159 -7 1751 66 0 0 chr12 39749805 39750018 -104036437 + AluSx SINE Alu 1 213 -99 1938 123 3 3 chr12 39750223 39750507 -104035948 + AluSp SINE Alu 1 284 -29 2204 107 0 3 chr12 39750659 39750958 -104035497 - AluSg SINE Alu -12 298 1 2446 65 0 0 chr12 39750985 39751292 -104035163 - AluY SINE Alu -4 307 1 1229 199 142 11 chr12 39751601 39751868 -104034587 - AluJb SINE Alu 0 302 1 2377 66 0 0 chr12 39751880 39752184 -104034271 - AluY SINE Alu -7 304 1 2179 72 10 17 chr12 39752217 39752508 -104033947 - AluY SINE Alu -12 299 11 2488 70 3 0 chr12 39752520 39752832 -104033623 - AluSp SINE Alu 0 313 1 2641 29 0 13 chr12 39752838 39753151 -104033304 - AluYa5 SINE Alu -1 310 2 1831 38 0 0 chr12 39753284 39753497 -104032958 + AluY SINE Alu 1 213 -98 2057 116 16 3 chr12 39753527 39753830 -104032625 - AluSx SINE Alu -5 307 1 391 277 45 0 chr12 39754868 39754980 -104031475 + MIR SINE MIR 146 262 0 391 280 39 93 chr12 39754946 39755128 -104031327 - MIR SINE MIR -83 179 8 1486 175 60 4 chr12 39755211 39755480 -104030975 + AluJb SINE Alu 1 284 -28 1226 46 0 58 chr12 39755560 39755734 -104030721 - SVA Other Other 0 1386 1223 539 302 164 44 chr12 39755734 39755909 -104030546 - L1ME4a LINE L1 -76 6045 5892 2144 117 3 3 chr12 39755909 39756216 -104030239 - AluSx SINE Alu -5 307 1 539 302 164 44 chr12 39756216 39756381 -104030074 - L1ME4a LINE L1 -229 5892 5664 2011 118 10 13 chr12 39756383 39756687 -104029768 - AluSx SINE Alu -9 303 1 2186 105 0 3 chr12 39756718 39757013 -104029442 + AluSg SINE Alu 1 294 -16 2263 85 0 0 chr12 39757018 39757311 -104029144 + AluSq SINE Alu 1 293 -20 1318 165 39 67 chr12 39757339 39757781 -104028674 + AluJo SINE Alu 6 439 0 708 176 0 0 chr12 39757784 39757892 -104028563 - AluJo/FLAM SINE Alu -204 108 1 1203 99 0 5 chr12 39758028 39758230 -104028225 - AluSq SINE Alu -12 301 1 268 292 62 0 chr12 39758412 39758508 -104027947 + MIR SINE MIR 118 219 -43 2269 98 3 0 chr12 39758750 39759055 -104027400 - AluSp SINE Alu -7 306 1 2344 51 7 3 chr12 39759141 39759433 -104027022 - AluY SINE Alu -18 293 1 2204 111 0 0 chr12 39759441 39759738 -104026717 - AluSx SINE Alu -15 297 1 2089 106 10 10 chr12 39759738 39760037 -104026418 - AluSx SINE Alu -11 301 1 339 310 78 0 chr12 39760042 39760171 -104026284 - MIR3 SINE MIR -67 141 3 543 196 0 0 chr12 39760432 39760534 -104025921 - MER3 DNA MER1_type -97 112 11 647 107 0 68 chr12 39760580 39760683 -104025772 + FLAM_C SINE Alu 25 120 -23 2232 98 0 0 chr12 39760782 39761077 -104025378 - AluSq SINE Alu -18 295 1 1185 150 0 0 chr12 39761081 39761261 -104025194 - AluJb SINE Alu 0 312 133 180 263 123 0 chr12 39761262 39761319 -104025136 - MIR SINE MIR -114 148 85 1219 195 0 31 chr12 39761333 39761590 -104024865 + AluJo SINE Alu 64 312 0 2309 110 0 0 chr12 39761791 39762100 -104024355 - AluSx SINE Alu -3 309 1 1879 147 0 19 chr12 39762246 39762558 -104023897 + AluJo SINE Alu 1 306 -6 799 190 14 0 chr12 39762624 39762766 -104023689 + FRAM SINE Alu 1 144 -32 1389 159 45 55 chr12 39762771 39762950 -104023505 - AluJb SINE Alu -12 300 124 2308 93 0 3 chr12 39762950 39763250 -104023205 - AluSx SINE Alu -13 299 1 1389 159 45 55 chr12 39763250 39763360 -104023095 - AluJb SINE Alu -188 124 14 2254 95 10 3 chr12 39763374 39763678 -104022777 - AluSg SINE Alu -4 306 1 2099 102 0 3 chr12 39763707 39764015 -104022440 + AluSq SINE Alu 1 307 0 219 74 0 74 chr12 39764642 39764696 -104021759 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 198 143 0 0 chr12 39765912 39765947 -104020508 + (T)n Simple_repeat Simple_repeat 1 35 0 2137 114 14 0 chr12 39767046 39767343 -104019112 + AluSx SINE Alu 1 301 -11 2353 68 7 7 chr12 39767644 39767953 -104018502 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr12 39767974 39767995 -104018460 + AT_rich Low_complexity Low_complexity 1 21 0 1053 123 7 7 chr12 39768003 39768157 -104018298 + AluSq SINE Alu 1 154 -159 602 165 0 0 chr12 39768158 39768255 -104018200 + AluSg/x SINE Alu 208 304 -5 425 276 61 37 chr12 39768533 39768788 -104017667 + L1P2 LINE L1 5582 5849 -305 2010 131 0 13 chr12 39768803 39769149 -104017306 - AluSg SINE Alu 0 310 3 1823 149 0 46 chr12 39769157 39769480 -104016975 - AluJb SINE Alu 0 312 5 1891 153 17 0 chr12 39769484 39769784 -104016671 - AluJo SINE Alu -7 305 1 2101 113 3 0 chr12 39769813 39770105 -104016350 + AluSq SINE Alu 1 293 -20 1412 182 17 116 chr12 39770106 39770301 -104016154 + MLT1A2 LTR MaLR 1 214 -160 1935 127 69 0 chr12 39770301 39770592 -104015863 - AluSx SINE Alu -1 311 1 1412 182 17 116 chr12 39770592 39770691 -104015764 + MLT1A2 LTR MaLR 214 321 -53 1875 132 14 3 chr12 39770691 39770980 -104015475 - AluSg SINE Alu -18 292 1 2190 107 0 19 chr12 39770981 39771299 -104015156 - AluSx SINE Alu 0 312 1 1412 182 17 116 chr12 39771299 39771414 -104015041 + MLT1A2 LTR MaLR 320 372 -2 1201 191 15 103 chr12 39771442 39771772 -104014683 + AluJb SINE Alu 2 302 0 1436 198 3 40 chr12 39771817 39771970 -104014485 - AluJo SINE Alu -25 287 149 2029 135 0 0 chr12 39771970 39772267 -104014188 - AluSx SINE Alu -15 297 1 1436 198 3 40 chr12 39772267 39772411 -104014044 - AluJo SINE Alu -163 149 1 2100 111 3 3 chr12 39772579 39772877 -104013578 - AluSq SINE Alu -15 298 1 265 274 177 0 chr12 39773368 39773481 -104012974 + MIR SINE MIR 90 222 -40 1392 130 34 111 chr12 39773516 39773555 -104012900 + AluJo SINE Alu 1 41 -271 2010 94 0 43 chr12 39773555 39773889 -104012566 - AluSx SINE Alu 0 321 1 1392 130 34 111 chr12 39773889 39774172 -104012283 + AluJo SINE Alu 41 299 -13 2137 97 14 0 chr12 39774173 39774463 -104011992 + AluSg SINE Alu 1 294 -16 2364 90 0 3 chr12 39774463 39774775 -104011680 + AluY SINE Alu 1 311 0 1481 181 0 8 chr12 39774807 39775072 -104011383 - AluJo SINE Alu -49 263 1 1881 141 47 0 chr12 39775077 39775375 -104011080 - AluSx SINE Alu 0 312 1 1051 151 0 27 chr12 39775429 39775614 -104010841 + FRAM SINE Alu 1 176 0 925 276 196 17 chr12 39775691 39776347 -104010108 + L2 LINE L2 2450 3238 -75 1759 109 0 8 chr12 39778038 39778286 -104008169 + AluY SINE Alu 40 285 -26 207 65 0 0 chr12 39778305 39778315 -104008140 + (CA)n Simple_repeat Simple_repeat 2 11 -21 1551 149 31 45 chr12 39778315 39778604 -104007851 + AluJb SINE Alu 1 285 -27 207 65 0 0 chr12 39778604 39778624 -104007831 + (CA)n Simple_repeat Simple_repeat 10 32 0 208 222 33 11 chr12 39778653 39778743 -104007712 + (CA)n Simple_repeat Simple_repeat 2 93 0 2034 137 0 7 chr12 39778993 39779299 -104007156 + AluJb SINE Alu 1 304 -8 182 211 0 0 chr12 39779454 39779492 -104006963 - MIR SINE MIR -113 149 112 882 175 0 28 chr12 39780896 39781073 -104005382 - FRAM SINE Alu -8 168 1 201 160 0 46 chr12 39781715 39781758 -104004697 + L2 LINE L2 3214 3294 -19 421 275 184 38 chr12 39781991 39782343 -104004112 + L2 LINE L2 2673 3074 -239 2008 96 16 48 chr12 39782369 39782682 -104003773 - AluSx SINE Alu -9 303 1 1622 184 7 7 chr12 39782802 39783096 -104003359 - AluJb SINE Alu -6 306 13 366 212 115 91 chr12 39783116 39783171 -104003284 + MIR SINE MIR 94 146 -116 2211 116 0 0 chr12 39783171 39783474 -104002981 + AluSx SINE Alu 1 303 -9 366 212 115 91 chr12 39783474 39783583 -104002872 + MIR SINE MIR 146 262 0 2206 112 0 0 chr12 39783962 39784265 -104002190 - AluSg SINE Alu -7 303 1 1706 140 51 10 chr12 39784265 39784555 -104001900 - AluJb SINE Alu -10 302 1 493 235 65 80 chr12 39784749 39784813 -104001642 + L1MC4a LINE L1 6349 6412 -1396 2327 86 0 3 chr12 39784813 39785117 -104001338 + AluSx SINE Alu 1 303 -9 493 235 65 80 chr12 39785117 39785312 -104001143 + L1MC4a LINE L1 6412 6520 -1288 2208 102 3 0 chr12 39785314 39785607 -104000848 + AluSc SINE Alu 1 294 -15 2053 119 3 7 chr12 39785607 39785901 -104000554 + AluSg SINE Alu 1 293 -17 612 158 18 9 chr12 39785910 39786024 -104000431 + L1MB7 LINE L1 6061 6175 -9 345 313 39 39 chr12 39786026 39786208 -104000247 - MIR SINE MIR 0 262 81 2214 86 16 22 chr12 39786409 39786724 -103999731 - AluSp SINE Alu 0 313 1 2287 82 3 7 chr12 39787203 39787509 -103998946 + AluSp SINE Alu 1 305 -8 1679 143 0 71 chr12 39787536 39787858 -103998597 + AluJo SINE Alu 5 303 -9 835 154 0 22 chr12 39787865 39788001 -103998454 + FLAM_C SINE Alu 1 133 0 384 119 0 0 chr12 39788013 39788072 -103998383 + (CA)n Simple_repeat Simple_repeat 2 60 0 351 113 0 0 chr12 39788078 39788131 -103998324 + (TG)n Simple_repeat Simple_repeat 2 54 0 2246 75 10 0 chr12 39788145 39788437 -103998018 + AluSp SINE Alu 2 296 -17 1110 162 0 0 chr12 39788440 39788637 -103997818 - L1MC1 LINE L1 -312 6021 5825 2349 84 0 10 chr12 39788639 39788664 -103997791 - AluY SINE Alu -4 307 283 1153 49 0 25 chr12 39788664 39788827 -103997628 + (CATATA)n Simple_repeat Simple_repeat 4 162 0 2349 84 0 10 chr12 39788827 39789111 -103997344 - AluY SINE Alu -28 283 1 941 99 0 0 chr12 39789113 39789244 -103997211 - AluSg1 SINE Alu -178 131 1 810 171 0 0 chr12 39789255 39789384 -103997071 - FRAM SINE Alu -24 152 24 1616 203 3 3 chr12 39789395 39789705 -103996750 + AluJb SINE Alu 1 310 -2 1604 210 6 61 chr12 39789709 39789805 -103996650 - L1MB8 LINE L1 -140 6038 5938 2157 117 0 0 chr12 39789805 39790104 -103996351 - AluSx SINE Alu -13 299 1 1604 210 6 61 chr12 39790104 39790233 -103996222 - L1MB8 LINE L1 -240 5938 5804 2063 115 16 19 chr12 39790233 39790545 -103995910 - AluSq SINE Alu -2 311 1 791 110 79 31 chr12 39790545 39790672 -103995783 - AluJo/FLAM SINE Alu -169 133 1 1604 210 6 61 chr12 39790672 39790939 -103995516 - L1MB8 LINE L1 -372 5806 5571 384 77 0 0 chr12 39790951 39791003 -103995452 + (TTTCC)n Simple_repeat Simple_repeat 4 55 0 1675 185 0 58 chr12 39791005 39791185 -103995270 - AluJo SINE Alu -2 310 156 2399 54 0 7 chr12 39791185 39791482 -103994973 - AluY SINE Alu -16 295 1 1675 185 0 58 chr12 39791482 39791630 -103994825 - AluJo SINE Alu -156 156 1 1528 209 20 3 chr12 39791660 39791966 -103994489 + AluJo SINE Alu 1 311 -1 2105 109 3 0 chr12 39791993 39792322 -103994133 + AluSp SINE Alu 1 330 0 411 164 0 182 chr12 39792322 39792412 -103994043 - L1MB8 LINE L1 -620 5554 5504 2184 123 0 0 chr12 39792412 39792720 -103993735 - AluSx SINE Alu -2 310 3 411 164 0 182 chr12 39792720 39792788 -103993667 - L1MB8 LINE L1 -670 5504 5425 1686 156 0 36 chr12 39792798 39793105 -103993350 + AluJo SINE Alu 1 296 -16 2381 67 3 0 chr12 39793107 39793405 -103993050 + AluY SINE Alu 1 299 -12 2103 96 7 0 chr12 39793414 39793695 -103992760 + AluSq SINE Alu 1 283 -30 1462 180 13 66 chr12 39793728 39794033 -103992422 - AluJb SINE Alu -9 303 15 620 202 0 0 chr12 39794033 39794137 -103992318 - AluJb SINE Alu -207 105 2 2045 125 3 25 chr12 39794256 39794439 -103992016 - AluSq SINE Alu 0 313 138 2245 110 3 0 chr12 39794439 39794748 -103991707 - AluSg SINE Alu 0 310 1 2045 125 3 25 chr12 39794748 39794884 -103991571 - AluSq SINE Alu -175 138 1 577 287 23 0 chr12 39795214 39795388 -103991067 + MLT1I LTR MaLR 232 409 0 423 298 122 50 chr12 39795391 39795670 -103990785 + L2 LINE L2 3015 3313 0 2405 78 3 0 chr12 39795675 39795984 -103990471 + AluSg SINE Alu 1 310 0 2134 108 7 3 chr12 39796020 39796316 -103990139 + AluSx SINE Alu 1 297 -15 1205 151 20 148 chr12 39796787 39796951 -103989504 + AluSx SINE Alu 2 101 -201 2069 117 0 43 chr12 39796951 39797275 -103989180 + AluSx SINE Alu 1 310 -2 1205 151 20 148 chr12 39797275 39797455 -103989000 + AluSx SINE Alu 101 302 0 361 290 0 0 chr12 39797458 39797596 -103988859 - L1ME LINE L1 -641 5523 5386 886 132 0 0 chr12 39797629 39797758 -103988697 - FLAM_C SINE Alu -9 134 6 1542 181 7 29 chr12 39797760 39798069 -103988386 - AluJo SINE Alu -10 302 1 1466 151 13 74 chr12 39798079 39798391 -103988064 - AluJb SINE Alu -19 293 1 544 286 17 11 chr12 39798589 39798764 -103987691 - MLT1C LTR MaLR -9 458 283 1979 103 37 0 chr12 39798765 39799063 -103987392 - AluSq SINE Alu 0 312 5 948 148 26 0 chr12 39799086 39799241 -103987214 + FRAM SINE Alu 1 152 -24 436 182 27 18 chr12 39799241 39799351 -103987104 - MLT1C LTR MaLR -354 113 3 2221 98 0 0 chr12 39799625 39799922 -103986533 + AluSq SINE Alu 1 297 -16 800 167 53 0 chr12 39799943 39800075 -103986380 + AluJb SINE Alu 144 282 -30 559 186 39 6 chr12 39800078 39800234 -103986221 + Charlie5 DNA MER1_type 2424 2584 -28 1867 156 0 0 chr12 39800255 39800577 -103985878 - AluSq SINE Alu 0 324 3 780 163 0 30 chr12 39800634 39800769 -103985686 + FLAM_A SINE Alu 1 131 -2 425 312 43 0 chr12 39800908 39801049 -103985406 - MIR SINE MIR 0 262 116 811 212 0 0 chr12 39801052 39801198 -103985257 + FRAM SINE Alu 1 146 -30 505 261 8 8 chr12 39801302 39801432 -103985023 + MIR SINE MIR 3 132 -130 1956 102 60 3 chr12 39801432 39801746 -103984709 - pTR5 LTR ERV1 -1935 503 172 330 233 11 0 chr12 39801749 39801839 -103984616 - LTR30 LTR ERV1 -80 642 552 198 367 37 9 chr12 39801839 39801948 -103984507 - MIR SINE MIR -56 152 41 835 194 21 0 chr12 39801987 39802131 -103984324 + AluJb SINE Alu 144 290 -22 2118 109 3 3 chr12 39802138 39802431 -103984024 + AluSx SINE Alu 5 297 -15 1360 71 98 0 chr12 39802469 39802653 -103983802 - AluY SINE Alu -109 202 1 436 198 38 28 chr12 39802653 39802759 -103983696 + AluJb SINE Alu 202 308 -4 545 221 42 33 chr12 39802773 39802795 -103983660 + MLT1A2 LTR MaLR 237 257 -117 2128 73 35 3 chr12 39802795 39803107 -103983348 + AluSp SINE Alu 1 313 0 545 221 42 33 chr12 39803107 39803237 -103983218 + MLT1A2 LTR MaLR 257 374 0 345 294 118 38 chr12 39803270 39803375 -103983080 - L2 LINE L2 -188 3125 3030 1959 134 28 0 chr12 39803375 39803666 -103982789 + AluJb SINE Alu 1 299 -13 345 294 118 38 chr12 39803666 39803771 -103982684 - L2 LINE L2 -283 3030 2898 2239 107 3 0 chr12 39803781 39804091 -103982364 + AluSx SINE Alu 1 311 -1 184 239 0 0 chr12 39804243 39804289 -103982166 - L3 LINE CR1 -945 632 587 215 381 10 0 chr12 39804334 39804431 -103982024 - MIR SINE MIR -15 247 150 2178 119 3 0 chr12 39804443 39804755 -103981700 + AluSq SINE Alu 1 313 0 1490 190 13 51 chr12 39804777 39804921 -103981534 + AluJo SINE Alu 1 149 -163 2484 60 0 0 chr12 39804921 39805219 -103981236 + AluY SINE Alu 1 298 -13 1490 190 13 51 chr12 39805219 39805385 -103981070 + AluJo SINE Alu 149 299 -13 189 0 0 0 chr12 39805423 39805444 -103981011 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 718 136 0 0 chr12 39805448 39805551 -103980904 + FLAM_A SINE Alu 21 123 -19 430 254 99 0 chr12 39805582 39805596 -103980859 - L1MA10 LINE L1 0 6334 6321 363 284 59 65 chr12 39805596 39805734 -103980721 - L1ME2 LINE L1 -9 6155 6017 1606 153 42 10 chr12 39805734 39806022 -103980433 + AluJo SINE Alu 9 305 -7 363 284 59 65 chr12 39806022 39806052 -103980403 - L1ME2 LINE L1 -147 6017 5988 268 103 52 17 chr12 39806072 39806130 -103980325 - L1ME2 LINE L1 -350 5892 5833 341 133 54 36 chr12 39806130 39806222 -103980233 - MIR SINE MIR -54 154 61 22 56 0 0 chr12 39806813 39806849 -103979606 + GC_rich Low_complexity Low_complexity 1 36 0 361 216 0 45 chr12 39807174 39807262 -103979193 + MIR SINE MIR 81 164 -98 249 300 14 0 chr12 39807326 39807396 -103979059 - MIR SINE MIR -77 185 115 2143 113 0 0 chr12 39807968 39808261 -103978194 + AluSx SINE Alu 10 302 -10 2028 99 32 3 chr12 39808267 39808551 -103977904 + AluSg1 SINE Alu 3 294 -15 818 206 0 0 chr12 39808557 39808698 -103977757 + FRAM SINE Alu 1 141 -35 1613 181 7 11 chr12 39808708 39808990 -103977465 + AluJo SINE Alu 1 281 -31 2026 125 0 25 chr12 39809003 39809323 -103977132 - AluSx SINE Alu 0 312 1 21 0 0 0 chr12 39809344 39809365 -103977090 + AT_rich Low_complexity Low_complexity 1 21 0 1082 161 6 0 chr12 39810152 39810320 -103976135 + FRAM SINE Alu 1 169 -7 603 67 0 0 chr12 39810320 39810395 -103976060 + AluS SINE Alu 1 75 -237 1996 114 0 0 chr12 39810395 39810666 -103975789 - AluSx SINE Alu -41 271 1 2120 96 3 19 chr12 39810688 39811002 -103975453 - AluSc SINE Alu 0 309 1 206 231 55 6 chr12 39811305 39811382 -103975073 + MIR SINE MIR 66 150 -58 2082 115 3 0 chr12 39811798 39812086 -103974369 - AluSq SINE Alu -18 295 7 2286 86 0 3 chr12 39812096 39812388 -103974067 - AluSx SINE Alu -21 291 1 273 282 0 77 chr12 39812408 39812525 -103973930 - L2 LINE L2 -22 3291 3184 701 109 127 9 chr12 39812573 39812683 -103973772 + AluJo/FLAM SINE Alu 1 123 -189 2010 129 0 14 chr12 39812683 39812977 -103973478 - AluSx SINE Alu -22 290 1 290 345 27 0 chr12 39813060 39813170 -103973285 - L2 LINE L2 -319 2994 2882 * 694 247 163 53 chr12 39813153 39813378 -103973077 + L2 LINE L2 2764 2963 -350 2232 96 3 0 chr12 39813378 39813671 -103972784 - AluY SINE Alu -9 302 9 694 247 163 53 chr12 39813671 39813703 -103972752 + L2 LINE L2 2963 2990 -323 374 119 51 0 chr12 39813703 39813762 -103972693 - U7 snRNA snRNA -1 62 1 694 247 163 53 chr12 39813762 39813855 -103972600 + L2 LINE L2 2990 3071 -242 1554 130 29 8 chr12 39813855 39814101 -103972354 + AluYb8 SINE Alu 1 251 -67 2041 91 7 17 chr12 39814102 39814389 -103972066 + AluSx SINE Alu 21 304 -8 694 247 163 53 chr12 39814389 39814533 -103971922 + L2 LINE L2 3070 3310 -3 232 186 68 0 chr12 39814650 39814709 -103971746 + C-rich Low_complexity Low_complexity 2 64 0 553 241 213 8 chr12 39815192 39815445 -103971010 - MLT1K LTR MaLR -116 472 168 191 107 0 0 chr12 39816181 39816209 -103970246 + MIR SINE MIR 117 144 -118 1742 132 70 0 chr12 39816237 39816509 -103969946 - AluJo SINE Alu -4 308 18 192 299 178 0 chr12 39817017 39817124 -103969331 - MIR SINE MIR -117 145 20 184 260 0 0 chr12 39817170 39817220 -103969235 - MIR SINE MIR -32 230 181 819 180 0 0 chr12 39817220 39817359 -103969096 - FRAM SINE Alu -17 159 21 597 256 131 0 chr12 39817447 39817638 -103968817 - MIR SINE MIR 0 262 47 21 0 0 0 chr12 39817928 39817949 -103968506 + GC_rich Low_complexity Low_complexity 1 21 0 235 234 135 45 chr12 39818192 39818303 -103968152 - MIR SINE MIR -127 135 15 462 227 30 53 chr12 39818610 39818742 -103967713 - MIR SINE MIR -103 159 31 896 137 0 0 chr12 39818751 39818882 -103967573 - AluJ SINE Alu -21 291 161 692 164 0 9 chr12 39818882 39818992 -103967463 - AluJ SINE Alu -203 109 1 1884 165 3 13 chr12 39819055 39819370 -103967085 + AluSx SINE Alu 1 312 0 1494 162 74 42 chr12 39819378 39819662 -103966793 + AluJb SINE Alu 1 293 -19 2164 89 34 7 chr12 39819783 39820076 -103966379 - AluSx SINE Alu -11 301 1 1212 110 0 0 chr12 39821215 39821379 -103965076 - AluSp SINE Alu -16 297 134 2037 106 3 7 chr12 39821381 39821674 -103964781 - AluSg SINE Alu -18 292 1 2247 112 0 0 chr12 39821677 39821972 -103964483 - AluSx SINE Alu -15 297 3 553 211 218 0 chr12 39822687 39822834 -103963621 - MIR SINE MIR -63 199 21 276 154 0 0 chr12 39822982 39823034 -103963421 + CT-rich Low_complexity Low_complexity 2 53 0 270 217 0 84 chr12 39823191 39823230 -103963225 - MIR SINE MIR -80 182 152 1632 201 10 3 chr12 39823230 39823533 -103962922 - AluJo SINE Alu -7 305 1 270 217 0 84 chr12 39823533 39823576 -103962879 - MIR SINE MIR -110 152 107 850 153 0 0 chr12 39823997 39824128 -103962327 - FLAM_C SINE Alu -1 132 2 280 181 72 48 chr12 39824170 39824253 -103962202 - MIR SINE MIR -79 183 99 2072 116 0 3 chr12 39824725 39825019 -103961436 - AluSx SINE Alu -19 293 1 1827 131 39 0 chr12 39825019 39825302 -103961153 - AluJo SINE Alu -18 294 1 2218 119 0 0 chr12 39825713 39826025 -103960430 - AluSx SINE Alu 0 312 1 2066 97 31 3 chr12 39826026 39826316 -103960139 - AluSx SINE Alu -14 298 1 1401 169 10 86 chr12 39826336 39826532 -103959923 - AluJo SINE Alu -23 289 80 2256 93 3 6 chr12 39826532 39826843 -103959612 + AluSq SINE Alu 2 311 -2 2309 93 3 0 chr12 39826847 39827148 -103959307 + AluSp SINE Alu 1 302 -11 1401 169 10 86 chr12 39827148 39827259 -103959196 - AluJo SINE Alu -235 77 1 344 331 66 0 chr12 39827426 39827562 -103958893 - MIR SINE MIR -70 192 48 28 29 0 0 chr12 39831552 39831587 -103954868 + GC_rich Low_complexity Low_complexity 1 35 0 1475 103 13 5 chr12 39832478 39832702 -103953753 - AluJb SINE Alu -3 309 84 718 148 8 8 chr12 39832742 39832870 -103953585 - FLAM_C SINE Alu -5 128 1 2383 56 7 3 chr12 39832936 39833241 -103953214 + AluY SINE Alu 1 306 -5 1302 106 5 0 chr12 39833241 39833419 -103953036 + AluSg/x SINE Alu 129 310 0 572 247 46 0 chr12 39833438 39833612 -103952843 - L2 LINE L2 -260 3053 2872 1235 84 21 11 chr12 39833662 39833852 -103952603 - AluY SINE Alu -1 310 119 298 93 0 0 chr12 39833852 39833895 -103952560 - Alu SINE Alu -11 297 255 1907 108 16 32 chr12 39833923 39834052 -103952403 + AluSq SINE Alu 2 132 -181 2476 44 0 3 chr12 39834052 39834349 -103952106 + AluY SINE Alu 1 296 -15 2372 69 0 3 chr12 39834352 39834658 -103951797 + AluSg SINE Alu 1 305 -5 2149 68 4 11 chr12 39834661 39834975 -103951480 + AluSg SINE Alu 1 312 0 1907 108 16 32 chr12 39834975 39835150 -103951305 + AluSq SINE Alu 136 310 -3 2261 104 0 0 chr12 39835805 39836102 -103950353 + AluSx SINE Alu 1 297 -15 2073 129 10 0 chr12 39836320 39836629 -103949826 - AluJo SINE Alu 0 312 1 1929 141 24 0 chr12 39836691 39836988 -103949467 - AluSx SINE Alu -8 304 1 1118 176 0 0 chr12 39837824 39838006 -103948449 + AluJo SINE Alu 87 268 -44 199 342 59 5 chr12 39838141 39838265 -103948190 - MIR3 SINE MIR -31 177 47 2416 53 3 28 chr12 39838423 39838742 -103947713 - AluY SINE Alu 0 311 1 2234 98 0 25 chr12 39838747 39838927 -103947528 - AluSx SINE Alu -2 310 140 2498 56 0 0 chr12 39838927 39839230 -103947225 - AluY SINE Alu -8 303 1 2234 98 0 25 chr12 39839230 39839367 -103947088 - AluSx SINE Alu -172 140 1 1505 100 0 35 chr12 39839367 39839597 -103946858 - AluSg/x SINE Alu -6 306 85 848 226 6 0 chr12 39839597 39839761 -103946694 - AluJo SINE Alu -147 165 1 2416 71 0 6 chr12 39840092 39840403 -103946052 - AluY SINE Alu -2 309 1 2102 110 3 0 chr12 39840403 39840704 -103945751 - AluSx SINE Alu -10 302 1 541 282 47 0 chr12 39840762 39840911 -103945544 + MIR SINE MIR 20 175 -87 956 146 2 4 chr12 39840949 39841181 -103945274 + AluY SINE Alu 2 312 0 1667 166 41 0 chr12 39841226 39841516 -103944939 - AluJb SINE Alu -6 306 5 1959 116 3 55 chr12 39841681 39841803 -103944652 - AluSx SINE Alu 0 312 185 2354 73 0 6 chr12 39841803 39842116 -103944339 + AluY SINE Alu 1 311 0 1959 116 3 55 chr12 39842116 39842322 -103944133 - AluSx SINE Alu -127 185 1 281 245 151 79 chr12 39842601 39842713 -103943742 - MIR SINE MIR -106 156 31 2226 88 7 7 chr12 39842713 39843020 -103943435 - AluSp SINE Alu -5 308 2 281 245 151 79 chr12 39843020 39843046 -103943409 - MIR SINE MIR -231 31 8 2038 98 0 11 chr12 39843048 39843333 -103943122 + AluSc SINE Alu 1 282 -27 1615 142 82 4 chr12 39843363 39843644 -103942811 + AluJo SINE Alu 1 303 -9 441 221 18 35 chr12 39843652 39843765 -103942690 + L2 LINE L2 3180 3290 -23 734 191 0 0 chr12 39844591 39844706 -103941749 + AluJb SINE Alu 2 116 -196 2088 102 10 7 chr12 39844707 39845010 -103941445 - AluSc SINE Alu -5 304 1 571 161 0 0 chr12 39845050 39845137 -103941318 + FRAM SINE Alu 72 158 -18 2057 129 10 0 chr12 39845137 39845446 -103941009 + AluSx SINE Alu 1 312 0 2013 138 0 0 chr12 39845496 39845794 -103940661 - AluSx SINE Alu -14 298 1 357 313 26 17 chr12 39845811 39845926 -103940529 - MIR3 SINE MIR -87 121 6 650 188 9 0 chr12 39846050 39846162 -103940293 + FLAM_C SINE Alu 29 141 -2 318 216 49 49 chr12 39846809 39846911 -103939544 + MIR SINE MIR 60 161 -101 2310 100 0 3 chr12 39846967 39847277 -103939178 + AluSc SINE Alu 1 309 0 416 131 0 12 chr12 39847277 39847361 -103939094 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 410 301 147 0 chr12 39847388 39847544 -103938911 - MIR SINE MIR -64 198 20 1351 167 13 13 chr12 39847642 39847881 -103938574 + AluJo SINE Alu 42 280 -32 1109 49 7 0 chr12 39847881 39848025 -103938430 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 1927 117 35 0 chr12 39848087 39848369 -103938086 + AluSc SINE Alu 3 294 -15 1691 152 3 61 chr12 39848519 39848670 -103937785 + AluJo SINE Alu 1 124 -188 2260 92 0 7 chr12 39848670 39848974 -103937481 + AluSc SINE Alu 1 302 -7 1691 152 3 61 chr12 39848974 39849150 -103937305 + AluJo SINE Alu 124 309 -3 1375 133 12 17 chr12 39849190 39849431 -103937024 + AluJo SINE Alu 72 311 -1 354 330 69 37 chr12 39849545 39849733 -103936722 - MIR SINE MIR -13 249 56 310 325 50 73 chr12 39850200 39850502 -103935953 - L1MEd LINE L1 -5009 1110 816 689 203 6 0 chr12 39850503 39850680 -103935775 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 229 266 76 0 chr12 39850692 39850771 -103935684 + L2 LINE L2 3137 3221 -51 1383 170 0 147 chr12 39850963 39851152 -103935303 - AluJb SINE Alu 0 302 187 1943 93 4 0 chr12 39851152 39851410 -103935045 - AluSx SINE Alu -53 259 1 1383 170 0 147 chr12 39851410 39851573 -103934882 - AluJb SINE Alu -115 187 2 2025 123 0 7 chr12 39851576 39851869 -103934586 - AluSp SINE Alu -22 291 1 2228 97 0 3 chr12 39851881 39852179 -103934276 - AluSg SINE Alu -13 297 1 2227 73 0 20 chr12 39852192 39852494 -103933961 - AluSg1 SINE Alu -13 296 1 2339 81 0 0 chr12 39852510 39852806 -103933649 - AluY SINE Alu -15 296 1 937 117 0 35 chr12 39852809 39852954 -103933501 - AluJo SINE Alu -170 142 3 332 305 117 19 chr12 39853070 39853224 -103933231 + MIR SINE MIR 6 174 -88 1994 98 0 0 chr12 39853309 39853575 -103932880 - AluSc SINE Alu -10 299 34 2113 121 3 6 chr12 39853865 39854178 -103932277 + AluSx SINE Alu 1 312 0 309 297 22 117 chr12 39854182 39854365 -103932090 - MIR SINE MIR -45 163 2 494 253 7 55 chr12 39854456 39854492 -103931963 - MIR SINE MIR -77 185 149 1639 189 0 10 chr12 39854492 39854661 -103931794 - AluJo SINE Alu -10 302 136 2339 71 0 13 chr12 39854661 39854971 -103931484 - AluY SINE Alu -5 306 1 1639 189 0 10 chr12 39854971 39855102 -103931353 - AluJo SINE Alu -176 136 5 494 253 7 55 chr12 39855102 39855211 -103931244 - MIR SINE MIR -113 149 47 1997 127 0 22 chr12 39855222 39855536 -103930919 - AluSg SINE Alu -1 309 3 2190 105 3 0 chr12 39855538 39855833 -103930622 - AluSp SINE Alu -17 296 1 1543 144 17 38 chr12 39855836 39856154 -103930301 - AluJb SINE Alu 0 312 1 2071 125 3 3 chr12 39856316 39856627 -103929828 + AluSx SINE Alu 1 311 -1 457 141 0 26 chr12 39857125 39857203 -103929252 - FLAM_A SINE Alu -56 76 1 751 188 70 2 chr12 39857203 39857396 -103929059 - L1MB3 LINE L1 -40 6126 5933 1156 134 27 0 chr12 39857410 39857597 -103928858 - AluSg/x SINE Alu 0 310 119 2067 98 0 52 chr12 39857620 39857945 -103928510 - AluSg SINE Alu -2 308 1 2025 125 0 13 chr12 39857945 39858249 -103928206 - AluSx SINE Alu -11 301 1 769 169 0 0 chr12 39858249 39858367 -103928088 + AluJo/FRAM SINE Alu 172 289 -23 411 56 0 0 chr12 39858560 39858614 -103927841 + (TG)n Simple_repeat Simple_repeat 2 55 0 1630 148 0 72 chr12 39858669 39858801 -103927654 + AluSx SINE Alu 5 145 -167 1994 117 3 3 chr12 39858801 39859107 -103927348 + AluSx SINE Alu 1 306 0 1630 148 0 72 chr12 39859107 39859121 -103927334 + AluSx SINE Alu 145 158 -154 231 36 0 0 chr12 39859121 39859149 -103927306 + (TA)n Simple_repeat Simple_repeat 1 28 0 1630 148 0 72 chr12 39859149 39859318 -103927137 + AluSx SINE Alu 158 299 -13 417 297 17 0 chr12 39859406 39859524 -103926931 + MIR SINE MIR 34 153 -109 1923 129 10 0 chr12 39859541 39859843 -103926612 + AluY SINE Alu 1 305 -6 240 35 0 0 chr12 39859849 39859878 -103926577 + (CA)n Simple_repeat Simple_repeat 2 30 0 225 65 0 0 chr12 39859894 39859925 -103926530 + Alu SINE Alu 225 255 -47 388 178 252 28 chr12 39859953 39860060 -103926395 + AluS SINE Alu 1 70 -232 2120 121 3 0 chr12 39860129 39860435 -103926020 - AluSx SINE Alu -5 307 1 657 179 54 0 chr12 39860436 39860548 -103925907 - AluJb SINE Alu -194 118 1 2112 104 3 0 chr12 39861165 39861453 -103925002 - AluSx SINE Alu -23 289 1 1883 131 3 32 chr12 39861671 39861985 -103924470 - AluSg SINE Alu -5 305 1 955 112 8 0 chr12 39862015 39862149 -103924306 + AluSq/x SINE Alu 1 135 -177 376 132 0 0 chr12 39862149 39862202 -103924253 + Alu SINE Alu 238 290 -10 1844 207 78 81 chr12 39862271 39862479 -103923976 - L1ME2 LINE L1 -122 6042 5835 1384 161 53 59 chr12 39862479 39862614 -103923841 + AluJo SINE Alu 1 135 -177 1972 98 7 28 chr12 39862614 39862899 -103923556 + AluSp SINE Alu 3 281 -32 186 43 0 0 chr12 39862899 39862922 -103923533 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1384 161 53 59 chr12 39862922 39863089 -103923366 + AluJo SINE Alu 133 302 -10 1844 207 78 81 chr12 39863089 39863519 -103922936 - L1ME2 LINE L1 -329 5835 5406 513 96 0 0 chr12 39863539 39863612 -103922843 - Alu SINE Alu -1 311 239 2227 81 3 37 chr12 39863622 39863943 -103922512 - AluSp SINE Alu -3 310 1 226 226 19 0 chr12 39864139 39864192 -103922263 - L1ME2 LINE L1 -2318 5490 5437 261 0 0 0 chr12 39864266 39864295 -103922160 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2240 43 18 0 chr12 39864303 39864579 -103921876 - AluY SINE Alu -30 281 1 1449 160 68 7 chr12 39864594 39864875 -103921580 - AluJo SINE Alu -14 298 1 186 103 0 0 chr12 39864896 39864925 -103921530 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 218 188 0 0 chr12 39865071 39865119 -103921336 + G-rich Low_complexity Low_complexity 6 53 0 355 248 106 0 chr12 39866722 39866835 -103919620 - L2 LINE L2 -5 3308 3184 232 267 33 0 chr12 39866944 39867004 -103919451 - L2 LINE L2 -316 2997 2936 384 286 9 9 chr12 39867254 39867359 -103919096 + MIR SINE MIR 33 137 -125 1715 125 54 11 chr12 39867770 39867903 -103918552 + AluY SINE Alu 2 128 -183 2011 114 7 10 chr12 39867903 39868221 -103918234 + AluSp SINE Alu 2 313 0 1715 125 54 11 chr12 39868221 39868367 -103918088 + AluY SINE Alu 128 293 -18 2025 127 0 0 chr12 39868393 39868677 -103917778 + AluSx SINE Alu 14 297 -15 1777 144 3 3 chr12 39868692 39868976 -103917479 + AluJo SINE Alu 9 292 -20 1139 59 0 0 chr12 39869062 39869197 -103917258 + AluSq/x SINE Alu 1 135 -177 1845 161 0 0 chr12 39869197 39869489 -103916966 + AluSq SINE Alu 1 292 -21 302 206 0 59 chr12 39869490 39869558 -103916897 - L1MC4 LINE L1 -1342 6700 6637 2436 43 0 7 chr12 39869580 39869881 -103916574 - AluY SINE Alu -12 299 1 180 0 0 0 chr12 39870010 39870030 -103916425 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1394 164 0 39 chr12 39870035 39870291 -103916164 - AluJo SINE Alu -33 279 34 410 38 0 0 chr12 39870391 39870444 -103916011 + AluY SINE Alu 248 300 -11 735 142 0 33 chr12 39870446 39870566 -103915889 - FLAM_A SINE Alu -17 116 1 466 255 7 21 chr12 39870647 39870788 -103915667 - L1ME3A LINE L1 0 6170 6032 21 36 0 0 chr12 39870814 39870842 -103915613 + AT_rich Low_complexity Low_complexity 1 28 0 1623 182 0 3 chr12 39870842 39871153 -103915302 - AluJb SINE Alu 0 310 1 2324 90 0 0 chr12 39871157 39871458 -103914997 - AluSg SINE Alu -9 301 1 2112 138 0 0 chr12 39871490 39871801 -103914654 - AluSx SINE Alu 0 312 2 911 151 0 0 chr12 39871841 39871967 -103914488 - FLAM_C SINE Alu -7 126 1 2022 135 3 0 chr12 39872004 39872308 -103914147 - AluSx SINE Alu -7 305 1 630 222 62 0 chr12 39872339 39872501 -103913954 + MER58C DNA MER1_type 44 215 0 2392 58 3 10 chr12 39872523 39872835 -103913620 - AluY SINE Alu -1 310 1 2415 75 0 0 chr12 39872835 39873142 -103913313 - AluSq SINE Alu -5 308 1 34 0 0 0 chr12 39873189 39873223 -103913232 + AT_rich Low_complexity Low_complexity 1 34 0 566 227 34 0 chr12 39873223 39873342 -103913113 - FLAM_A SINE Alu -10 123 1 22 0 0 0 chr12 39873350 39873372 -103913083 + AT_rich Low_complexity Low_complexity 1 22 0 1914 142 0 0 chr12 39873372 39873686 -103912769 + AluSx SINE Alu 1 314 0 357 177 0 0 chr12 39873688 39873750 -103912705 + AluS SINE Alu 1 62 -246 1490 202 0 10 chr12 39873750 39874047 -103912408 + AluJb SINE Alu 12 305 -7 1921 128 7 16 chr12 39874288 39874594 -103911861 + AluJo SINE Alu 1 303 -9 245 229 177 21 chr12 39875125 39875221 -103911234 + MIR SINE MIR 46 156 -106 1084 160 16 0 chr12 39875253 39875441 -103911014 - AluJb SINE Alu -2 310 120 2200 119 0 3 chr12 39875443 39875753 -103910702 - AluSx SINE Alu -3 309 1 824 158 0 0 chr12 39875767 39875894 -103910561 + FLAM_C SINE Alu 1 127 -16 1524 176 30 40 chr12 39875897 39876156 -103910299 + MLT1D LTR MaLR 180 437 -68 2086 102 3 3 chr12 39876156 39876469 -103909986 - AluSq SINE Alu 0 313 1 1524 176 30 40 chr12 39876469 39876538 -103909917 + MLT1D LTR MaLR 437 505 0 335 278 0 0 chr12 39876536 39876608 -103909847 - Tigger2a DNA MER2_type 0 444 373 * 819 154 0 0 chr12 39876611 39876734 -103909721 - FLAM_C SINE Alu -19 124 2 635 108 26 246 chr12 39876734 39876891 -103909564 - Tigger2a DNA MER2_type -2333 385 326 2391 90 0 0 chr12 39876891 39877202 -103909253 + AluSx SINE Alu 1 311 -1 635 108 26 246 chr12 39877202 39877349 -103909106 - Tigger2a DNA MER2_type -2392 326 148 901 127 0 8 chr12 39877351 39877485 -103908970 + AluSq/x SINE Alu 1 133 -180 2172 105 0 0 chr12 39877494 39877790 -103908665 + AluSx SINE Alu 1 296 -16 583 172 0 110 chr12 39877792 39877937 -103908518 - Tigger2a DNA MER2_type -305 129 1 322 306 106 29 chr12 39877941 39878085 -103908370 + MIR SINE MIR 23 183 -79 1555 142 98 0 chr12 39878085 39878359 -103908096 + AluJo SINE Alu 1 301 -11 322 306 106 29 chr12 39878359 39878384 -103908071 + MIR SINE MIR 183 205 -57 21 36 0 0 chr12 39878385 39878413 -103908042 + AT_rich Low_complexity Low_complexity 1 28 0 1263 200 30 4 chr12 39878452 39878601 -103907854 - AluJb SINE Alu -31 281 120 215 0 67 0 chr12 39878601 39878631 -103907824 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1263 200 30 4 chr12 39878631 39878751 -103907704 - AluJb SINE Alu -192 120 5 1224 99 0 0 chr12 39878785 39878946 -103907509 + AluSq SINE Alu 1 161 -152 837 170 0 0 chr12 39878963 39879110 -103907345 - AluJo/FRAM SINE Alu -30 282 136 2354 77 3 0 chr12 39879112 39879422 -103907033 - AluY SINE Alu 0 311 1 218 275 121 22 chr12 39879894 39879985 -103906470 + MIR SINE MIR 85 145 -63 1852 109 6 58 chr12 39880213 39880374 -103906081 - AluSq SINE Alu -18 295 127 2204 96 0 3 chr12 39880374 39880677 -103905778 - AluY SINE Alu -9 302 1 2050 48 0 0 chr12 39880677 39880928 -103905527 - AluY SINE Alu -7 304 54 1852 109 6 58 chr12 39880928 39880985 -103905470 - AluSq SINE Alu -184 129 1 659 132 0 0 chr12 39880985 39881076 -103905379 - AluS SINE Alu -221 91 1 901 153 27 38 chr12 39881158 39881341 -103905114 - AluJo SINE Alu -3 309 129 1710 165 14 7 chr12 39881350 39881647 -103904808 + AluJb SINE Alu 1 299 -13 675 168 97 0 chr12 39881727 39881840 -103904615 - FLAM_C SINE Alu -19 124 2 2119 93 3 7 chr12 39881875 39882165 -103904290 + AluSx SINE Alu 2 290 -22 1225 170 9 27 chr12 39882176 39882400 -103904055 + AluJb SINE Alu 85 304 -8 1741 125 96 4 chr12 39882403 39882683 -103903772 + AluSx SINE Alu 3 308 -4 1171 273 168 29 chr12 39882779 39882966 -103903489 - L2 LINE L2 -4 3309 3149 1541 173 3 34 chr12 39882966 39883261 -103903194 + AluJo SINE Alu 17 302 -10 1986 140 6 16 chr12 39883269 39883584 -103902871 + AluSx SINE Alu 1 312 0 1171 273 168 29 chr12 39883584 39883627 -103902828 - L2 LINE L2 -170 3143 3107 1680 160 0 60 chr12 39883627 39883813 -103902642 - AluJb SINE Alu 0 312 153 2159 111 10 3 chr12 39883813 39884119 -103902336 - AluSp SINE Alu -5 308 1 1680 160 0 60 chr12 39884119 39884264 -103902191 - AluJb SINE Alu -159 153 1 1171 273 168 29 chr12 39884264 39884822 -103901633 - L2 LINE L2 -206 3107 2628 2044 122 3 3 chr12 39884822 39885116 -103901339 + AluJo SINE Alu 1 294 -18 1171 273 168 29 chr12 39885116 39885309 -103901146 - L2 LINE L2 -685 2628 2146 776 159 0 0 chr12 39885766 39885879 -103900576 + AluJo/FLAM SINE Alu 6 118 -194 2234 109 3 0 chr12 39885880 39886191 -103900264 - AluSx SINE Alu 0 312 1 2122 89 14 3 chr12 39886216 39886498 -103899957 - AluSc SINE Alu -24 285 1 2010 125 30 0 chr12 39886500 39886795 -103899660 - AluSg SINE Alu -6 304 1 278 379 0 0 chr12 39886832 39886935 -103899520 - MIR SINE MIR -113 149 47 369 313 27 0 chr12 39886939 39887051 -103899404 + L2 LINE L2 3146 3260 -12 1632 193 6 3 chr12 39887055 39887366 -103899089 + AluJb SINE Alu 1 312 0 260 309 21 32 chr12 39887393 39887487 -103898968 + MIR SINE MIR 54 146 -62 1789 123 13 55 chr12 39888615 39888924 -103897531 - AluSx SINE Alu -16 296 1 711 170 44 15 chr12 39888933 39889092 -103897363 - AluSg/x SINE Alu 0 310 158 979 121 0 0 chr12 39889098 39889238 -103897217 + AluSp/q SINE Alu 169 308 -5 2311 98 0 0 chr12 39889241 39889538 -103896917 + AluSx SINE Alu 1 297 -15 1302 180 0 21 chr12 39889540 39889773 -103896682 + AluJo SINE Alu 85 312 0 2019 139 0 3 chr12 39890305 39890606 -103895849 + AluSx SINE Alu 1 300 -12 947 195 6 0 chr12 39890606 39890780 -103895675 + AluJb SINE Alu 134 308 -4 208 373 59 39 chr12 39890787 39890940 -103895515 - L2 LINE L2 -25 3288 3133 763 240 0 0 chr12 39890964 39891137 -103895318 + MIR SINE MIR 57 228 -34 1974 99 56 14 chr12 39891139 39891423 -103895032 + AluSg SINE Alu 2 297 -13 2128 112 0 0 chr12 39891464 39891780 -103894675 - AluSq SINE Alu 0 316 1 231 36 0 0 chr12 39891780 39891808 -103894647 + (TTA)n Simple_repeat Simple_repeat 2 29 0 606 210 87 14 chr12 39891808 39891946 -103894509 - FRAM SINE Alu -28 148 1 2314 84 0 3 chr12 39891959 39892257 -103894198 - AluSx SINE Alu -15 297 1 1563 160 51 10 chr12 39892284 39892577 -103893878 + AluJb SINE Alu 1 305 -7 2214 108 0 13 chr12 39892577 39892892 -103893563 + AluSx SINE Alu 1 311 -1 2400 70 0 3 chr12 39892924 39893223 -103893232 + AluSq SINE Alu 1 298 -15 2478 62 3 0 chr12 39894457 39894762 -103891693 + AluSp SINE Alu 1 306 -7 380 246 92 84 chr12 39894768 39894872 -103891583 + MIR SINE MIR 8 115 -147 2185 107 3 0 chr12 39894872 39895172 -103891283 - AluSp SINE Alu -10 303 3 380 246 92 84 chr12 39895172 39895209 -103891246 + MIR SINE MIR 115 150 -112 1989 94 22 11 chr12 39895349 39895662 -103890793 - AluSg SINE Alu 0 316 1 1867 160 0 3 chr12 39895666 39895959 -103890496 - AluJo SINE Alu -20 292 1 900 85 0 0 chr12 39896058 39896176 -103890279 + AluSp SINE Alu 1 118 -195 2274 57 0 60 chr12 39896176 39896490 -103889965 - AluSg SINE Alu -15 295 1 1526 90 5 0 chr12 39896490 39896691 -103889764 + AluSp SINE Alu 106 307 -6 488 207 90 41 chr12 39896718 39896863 -103889592 - L2 LINE L2 -243 3070 2919 187 208 139 69 chr12 39897800 39897872 -103888583 - L2 LINE L2 -9 3263 3187 2291 104 0 0 chr12 39897972 39898279 -103888176 - AluSc SINE Alu -2 307 1 2070 102 20 7 chr12 39899276 39899571 -103886884 + AluSx SINE Alu 1 299 -13 672 105 48 19 chr12 39899621 39899726 -103886729 - FRAM SINE Alu -21 155 48 1011 161 0 11 chr12 39900648 39900828 -103885627 - AluSg/x SINE Alu -15 295 118 1890 153 6 13 chr12 39900828 39901005 -103885450 - AluSx SINE Alu -1 311 135 2287 91 3 0 chr12 39901005 39901301 -103885154 - AluSp SINE Alu -16 297 1 1890 153 6 13 chr12 39901301 39901436 -103885019 - AluSx SINE Alu -177 135 1 199 244 22 0 chr12 39901436 39901481 -103884974 - L2 LINE L2 -6 3307 3262 224 266 177 8 chr12 39901706 39901799 -103884656 - L2 LINE L2 -350 2963 2843 2146 101 0 7 chr12 39901799 39902096 -103884359 + AluSx SINE Alu 1 295 -17 224 266 177 8 chr12 39902096 39902126 -103884329 - L2 LINE L2 -470 2843 2819 2094 136 0 0 chr12 39902288 39902596 -103883859 - AluSx SINE Alu -4 308 1 21 0 0 0 chr12 39902610 39902631 -103883824 + AT_rich Low_complexity Low_complexity 1 21 0 732 147 17 0 chr12 39902681 39902797 -103883658 - FLAM_C SINE Alu -15 118 1 242 333 12 12 chr12 39902809 39902890 -103883565 - L2 LINE L2 -5 3308 3228 2055 123 0 13 chr12 39903009 39903309 -103883146 + AluSc SINE Alu 1 296 -13 1866 164 0 3 chr12 39903316 39903620 -103882835 + AluJb SINE Alu 1 303 -9 1660 168 23 26 chr12 39903776 39904079 -103882376 + AluJb SINE Alu 1 302 -10 2182 93 10 13 chr12 39904079 39904380 -103882075 + AluSx SINE Alu 1 300 -12 229 221 0 44 chr12 39904990 39905058 -103881397 + CT-rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr12 39906064 39906085 -103880370 + AT_rich Low_complexity Low_complexity 1 21 0 2157 96 7 3 chr12 39907256 39907559 -103878896 - AluSx SINE Alu -8 304 1 1213 157 78 0 chr12 39907559 39907763 -103878692 - AluJb SINE Alu -8 304 85 1954 114 22 47 chr12 39907763 39908080 -103878375 - AluSx SINE Alu -3 309 1 188 154 96 39 chr12 39908108 39908160 -103878295 - MIR SINE MIR -200 62 8 2263 117 0 0 chr12 39908268 39908575 -103877880 + AluSg SINE Alu 1 307 -3 715 214 0 0 chr12 39908618 39908749 -103877706 - FLAM_A SINE Alu -1 132 2 1130 198 125 94 chr12 39908881 39908982 -103877473 + MLT2B3 LTR ERVL 1 97 -457 1509 196 25 4 chr12 39908982 39909263 -103877192 + AluJb SINE Alu 1 287 -15 1130 198 125 94 chr12 39909263 39909660 -103876795 + MLT2B3 LTR ERVL 97 554 0 2351 72 3 3 chr12 39909682 39909988 -103876467 - AluY SINE Alu -5 306 1 2067 92 0 0 chr12 39910015 39910287 -103876168 - AluSg1 SINE Alu -16 293 22 2290 96 3 6 chr12 39911016 39911329 -103875126 - AluSx SINE Alu 0 312 1 1955 139 7 0 chr12 39911330 39911624 -103874831 - AluSx SINE Alu -16 296 1 1763 170 11 3 chr12 39911676 39911985 -103874470 + AluSx SINE Alu 1 311 0 829 128 8 0 chr12 39911990 39912107 -103874348 - FLAM_C SINE Alu -25 118 1 189 257 0 97 chr12 39912163 39912276 -103874179 - MIR SINE MIR 0 262 161 186 371 29 0 chr12 39912414 39912484 -103873971 + MIR SINE MIR 34 105 -103 987 144 35 6 chr12 39912579 39912753 -103873702 - AluJb SINE Alu -4 308 130 2327 82 0 0 chr12 39912961 39913266 -103873189 + AluY SINE Alu 1 305 -6 2340 74 0 10 chr12 39913338 39913635 -103872820 - AluY SINE Alu -16 295 2 1600 163 39 7 chr12 39913736 39914019 -103872436 - AluJb SINE Alu -20 292 1 2170 139 93 44 chr12 39914038 39914535 -103871920 - LTR61 LTR ERV1 0 595 75 1122 98 0 88 chr12 39914551 39914744 -103871711 - AluSg/x SINE Alu -3 307 132 2300 96 0 0 chr12 39914744 39915047 -103871408 - AluSx SINE Alu -9 303 1 2315 67 3 14 chr12 39915075 39915372 -103871083 - AluSg SINE Alu -16 294 1 304 336 7 56 chr12 39915631 39915774 -103870681 + MIR3 SINE MIR 50 185 -23 186 103 0 0 chr12 39916513 39916542 -103869913 + (CCCG)n Simple_repeat Simple_repeat 2 30 0 1173 234 25 0 chr12 39916951 39917237 -103869218 - L1MB3 LINE L1 -63 6120 5828 1975 125 10 0 chr12 39917237 39917534 -103868921 - AluY SINE Alu -11 300 1 1050 99 0 7 chr12 39917553 39917695 -103868760 + AluSg/x SINE Alu 157 297 -13 2372 93 0 0 chr12 39917698 39918011 -103868444 + AluSq SINE Alu 1 313 0 824 169 19 80 chr12 39918103 39918178 -103868277 + MER20 DNA MER1_type 18 96 -123 2319 84 3 0 chr12 39918178 39918474 -103867981 + AluSp SINE Alu 1 297 -16 824 169 19 80 chr12 39918474 39918611 -103867844 + MER20 DNA MER1_type 96 217 -2 1875 168 3 0 chr12 39918681 39918990 -103867465 + AluJb SINE Alu 1 310 -2 1681 148 46 16 chr12 39918993 39919296 -103867159 + AluJo SINE Alu 1 312 0 2262 113 0 0 chr12 39919302 39919604 -103866851 + AluSg SINE Alu 1 302 -8 2241 97 3 7 chr12 39919997 39920305 -103866150 + AluSg SINE Alu 1 307 -3 1832 147 23 7 chr12 39920308 39920615 -103865840 + AluSx SINE Alu 1 312 0 299 103 0 17 chr12 39920618 39920676 -103865779 + (GGAAA)n Simple_repeat Simple_repeat 2 58 0 663 202 0 0 chr12 39920676 39920785 -103865670 - FLAM_A SINE Alu -33 109 1 219 321 9 19 chr12 39920826 39920932 -103865523 + G-rich Low_complexity Low_complexity 2 106 0 * 242 337 18 12 chr12 39920913 39921076 -103865379 + GA-rich Low_complexity Low_complexity 5 168 0 738 188 0 15 chr12 39921076 39921209 -103865246 + FLAM_C SINE Alu 1 131 -12 24 0 0 0 chr12 39921210 39921234 -103865221 + AT_rich Low_complexity Low_complexity 1 24 0 2098 73 9 88 chr12 39921237 39921577 -103864878 + AluSp SINE Alu 1 313 0 360 198 28 51 chr12 39922261 39922493 -103863962 + (CAGCC)n Simple_repeat Simple_repeat 1 226 0 600 165 0 113 chr12 39922733 39922866 -103863589 + FLAM_A SINE Alu 1 118 -15 1986 123 43 10 chr12 39922871 39923171 -103863284 - AluSq SINE Alu -3 310 1 2222 110 0 0 chr12 39923179 39923478 -103862977 - AluSx SINE Alu -11 301 3 2156 116 0 13 chr12 39923514 39923824 -103862631 + AluSg SINE Alu 1 306 -4 492 309 0 18 chr12 39924477 39924671 -103861784 - MIR SINE MIR 0 262 15 193 322 17 0 chr12 39924719 39924778 -103861677 + L2 LINE L2 3242 3301 -12 1975 134 0 0 chr12 39924778 39925094 -103861361 + AluSx SINE Alu 1 316 0 444 269 71 33 chr12 39925286 39925468 -103860987 + LTR16A1 LTR ERVL 49 237 -220 243 222 0 0 chr12 39925472 39925517 -103860938 + LTR16A1 LTR ERVL 413 457 0 2341 75 0 3 chr12 39926488 39926781 -103859674 - AluSx SINE Alu -20 292 1 1687 117 0 35 chr12 39927004 39927132 -103859323 - AluJo SINE Alu -54 258 141 2171 102 0 0 chr12 39927132 39927451 -103859004 - AluSg SINE Alu 0 319 1 1687 117 0 35 chr12 39927451 39927578 -103858877 - AluJo SINE Alu -171 141 11 807 80 0 27 chr12 39927912 39928024 -103858431 - AluSg/x SINE Alu -8 301 193 1094 139 0 0 chr12 39928041 39928213 -103858242 - AluSg/x SINE Alu 0 302 131 2283 83 0 7 chr12 39928214 39928515 -103857940 - AluSq SINE Alu -13 300 2 189 0 0 0 chr12 39931062 39931083 -103855372 + (CA)n Simple_repeat Simple_repeat 1 21 0 212 267 9 17 chr12 39931174 39931241 -103855214 + (CA)n Simple_repeat Simple_repeat 1 68 -47 1915 78 12 4 chr12 39931241 39931499 -103854956 - AluSp SINE Alu -13 300 41 212 267 9 17 chr12 39931499 39931547 -103854908 + (CA)n Simple_repeat Simple_repeat 68 115 0 378 0 0 0 chr12 39931634 39931676 -103854779 + (CA)n Simple_repeat Simple_repeat 2 43 0 468 228 10 10 chr12 39931884 39931985 -103854470 - MER91C DNA MER1_type -39 101 1 334 262 148 16 chr12 39933262 39933384 -103853071 - MIR3 SINE MIR -65 143 6 239 286 44 22 chr12 39933487 39933578 -103852877 - MIR SINE MIR -29 233 141 1582 168 13 13 chr12 39933579 39933883 -103852572 - AluJb SINE Alu -8 304 1 2161 95 0 0 chr12 39934037 39934370 -103852085 + AluSx SINE Alu 1 333 0 198 203 188 0 chr12 39934431 39934495 -103851960 - MIR SINE MIR -82 126 51 1983 139 3 0 chr12 39935048 39935342 -103851113 - AluSx SINE Alu -17 295 1 735 211 0 8 chr12 39935352 39935368 -103851087 - FLAM_C SINE Alu -170 132 117 1720 96 4 8 chr12 39935368 39935607 -103850848 + AluSc SINE Alu 71 308 -1 735 211 0 8 chr12 39935607 39935723 -103850732 - FLAM_C SINE Alu -185 117 1 845 119 0 0 chr12 39936028 39936146 -103850309 + FLAM_C SINE Alu 1 118 -15 2507 68 0 0 chr12 39936172 39936483 -103849972 + AluY SINE Alu 1 311 0 2136 83 0 23 chr12 39936497 39936799 -103849656 + AluY SINE Alu 1 295 -16 2359 71 6 6 chr12 39936803 39937114 -103849341 + AluSx SINE Alu 1 311 -1 2147 86 0 33 chr12 39937550 39937853 -103848602 + AluSx SINE Alu 1 293 -19 2054 122 0 10 chr12 39937909 39938212 -103848243 - AluSx SINE Alu -12 300 1 861 219 161 46 chr12 39938331 39938724 -103847731 + L2 LINE L2 2440 2945 -368 2099 112 0 10 chr12 39938724 39939027 -103847428 + AluSx SINE Alu 1 300 -12 861 219 161 46 chr12 39939027 39939174 -103847281 + L2 LINE L2 2945 3074 -239 1999 100 60 0 chr12 39939184 39939465 -103846990 - AluSp SINE Alu -15 298 1 1035 83 0 0 chr12 39939467 39939599 -103846856 - AluSp SINE Alu -181 132 1 2199 109 7 0 chr12 39939671 39939973 -103846482 - AluSx SINE Alu -8 304 1 861 187 7 0 chr12 39939978 39940133 -103846322 - AluJb SINE Alu -23 289 134 1727 147 0 74 chr12 39940133 39940459 -103845996 - AluJb SINE Alu -10 302 1 977 152 36 0 chr12 39940521 39940686 -103845769 - AluJo SINE Alu -26 286 116 217 176 59 0 chr12 39940841 39940909 -103845546 + (TTATA)n Simple_repeat Simple_repeat 3 74 0 310 98 9 89 chr12 39940919 39941031 -103845424 + (TAA)n Simple_repeat Simple_repeat 3 105 0 618 167 0 0 chr12 39941031 39941127 -103845328 - AluJ/FLAM SINE Alu -211 101 6 1880 125 0 0 chr12 39941149 39941437 -103845018 - AluSx SINE Alu 0 307 20 674 197 221 28 chr12 39941619 39941707 -103844748 + L1M3 LINE L1 4874 4944 -1202 2400 74 0 3 chr12 39941707 39942016 -103844439 + AluSx SINE Alu 1 308 -4 674 197 221 28 chr12 39942016 39942181 -103844274 + L1M3 LINE L1 4944 5176 -970 586 138 0 0 chr12 39942183 39942270 -103844185 + FLAM_A SINE Alu 42 128 -14 1293 92 12 0 chr12 39942271 39942444 -103844011 + AluSx SINE Alu 1 175 -137 955 130 11 70 chr12 39942473 39942658 -103843797 + AluJo SINE Alu 118 291 -21 1755 153 0 26 chr12 39942660 39942800 -103843655 + AluSx SINE Alu 1 143 -169 2080 124 0 3 chr12 39942800 39943107 -103843348 + AluSg SINE Alu 1 306 -4 1755 153 0 26 chr12 39943107 39943274 -103843181 + AluSx SINE Alu 143 300 -12 581 186 20 55 chr12 39943278 39943414 -103843041 + L1M3 LINE L1 5304 5437 -743 2139 120 3 0 chr12 39943414 39943715 -103842740 + AluSx SINE Alu 1 302 -10 581 186 20 55 chr12 39943715 39943747 -103842708 + L1M3 LINE L1 5437 5469 -711 795 305 23 11 chr12 39944162 39944216 -103842239 + L1PB2 LINE L1 5525 5577 -574 2044 133 0 0 chr12 39944216 39944525 -103841930 + AluSx SINE Alu 1 309 -3 795 305 23 11 chr12 39944525 39944821 -103841634 + L1PB2 LINE L1 5577 5879 -272 * 2828 135 19 70 chr12 39944526 39944821 -103841634 + L1MB3 LINE L1 5589 5898 -285 1937 83 8 0 chr12 39944821 39945100 -103841355 + AluSp SINE Alu 30 310 0 2828 135 19 70 chr12 39945100 39945287 -103841168 + L1MB3 LINE L1 5898 6093 -90 2326 71 0 0 chr12 39945287 39945581 -103840874 + AluSc SINE Alu 1 294 -15 1869 143 0 13 chr12 39945589 39945890 -103840565 + AluJb SINE Alu 1 297 -15 2828 135 19 70 chr12 39945890 39945980 -103840475 + L1MB3 LINE L1 6100 6142 -41 1799 172 7 0 chr12 39945980 39946276 -103840179 + AluJo SINE Alu 1 298 -14 2051 103 41 0 chr12 39946276 39946566 -103839889 + AluSg SINE Alu 1 302 -8 2052 106 7 0 chr12 39946634 39946940 -103839515 - AluSx SINE Alu 0 308 1 239 284 0 68 chr12 39946949 39947023 -103839432 - L2 LINE L2 -18 3254 3186 * 323 291 10 10 chr12 39947008 39947111 -103839344 - MIR SINE MIR 0 262 160 2258 88 3 0 chr12 39947126 39947423 -103839032 - AluSp SINE Alu -14 299 2 288 70 0 0 chr12 39948093 39948136 -103838319 + (TG)n Simple_repeat Simple_repeat 2 44 0 1714 142 14 27 chr12 39948136 39948423 -103838032 - AluJb SINE Alu -27 285 1 627 171 36 0 chr12 39948696 39948807 -103837648 + AluSg/x SINE Alu 188 302 -8 2152 106 3 3 chr12 39948807 39949110 -103837345 + AluSx SINE Alu 1 303 -9 1894 145 13 10 chr12 39949190 39949556 -103836899 + AluSx SINE Alu 1 367 0 972 107 0 0 chr12 39949618 39949749 -103836706 - FLAM_C SINE Alu -12 131 1 26 0 0 0 chr12 39951224 39951250 -103835205 + GC_rich Low_complexity Low_complexity 1 26 0 212 210 16 32 chr12 39951568 39951630 -103834825 + C-rich Low_complexity Low_complexity 4 64 0 245 169 108 0 chr12 39951762 39951827 -103834628 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 203 284 0 34 chr12 39952685 39952773 -103833682 + G-rich Low_complexity Low_complexity 2 86 0 38 101 0 0 chr12 39952836 39952965 -103833490 + GC_rich Low_complexity Low_complexity 1 129 0 1565 181 24 3 chr12 39954065 39954358 -103832097 + AluJo SINE Alu 4 302 -10 611 157 11 49 chr12 39954382 39954567 -103831888 + CT-rich Low_complexity Low_complexity 3 180 0 195 42 0 0 chr12 39954572 39954596 -103831859 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 1484 137 0 13 chr12 39954602 39954828 -103831627 - AluSx SINE Alu -37 275 53 637 290 117 9 chr12 39954915 39955129 -103831326 + MIR SINE MIR 25 261 -1 194 329 0 0 chr12 39955133 39955195 -103831260 - L2 LINE L2 -8 3305 3241 234 91 0 0 chr12 39955195 39955228 -103831227 + (ATG)n Simple_repeat Simple_repeat 2 34 0 459 48 0 0 chr12 39955280 39955342 -103831113 + (TC)n Simple_repeat Simple_repeat 1 62 0 24 77 0 0 chr12 39955455 39955507 -103830948 + GC_rich Low_complexity Low_complexity 1 52 0 2247 95 3 0 chr12 39957456 39957760 -103828695 - AluSp SINE Alu -8 305 1 1902 122 7 23 chr12 39958178 39958481 -103827974 + AluSg SINE Alu 1 298 -12 1684 164 0 17 chr12 39958559 39958857 -103827598 - AluJb SINE Alu -19 293 1 808 144 38 15 chr12 39958944 39959076 -103827379 - AluJo SINE Alu -175 137 3 21 0 0 0 chr12 39959198 39959219 -103827236 + AT_rich Low_complexity Low_complexity 1 21 0 2203 74 7 7 chr12 39959237 39959534 -103826921 + AluY SINE Alu 1 297 -14 1791 136 3 48 chr12 39959733 39960042 -103826413 - AluSx SINE Alu -12 300 6 2321 57 23 3 chr12 39960050 39960351 -103826104 - AluYa5 SINE Alu -4 307 1 709 204 0 22 chr12 39960351 39960488 -103825967 - AluSq/x SINE Alu -177 135 2 717 215 0 0 chr12 39960873 39961003 -103825452 - FLAM_A SINE Alu 0 133 4 291 288 103 34 chr12 39961072 39961218 -103825237 - MIR SINE MIR -74 188 33 2102 110 0 0 chr12 39961300 39961590 -103824865 - AluSg SINE Alu -20 290 1 2137 113 0 3 chr12 39961756 39962058 -103824397 + AluSx SINE Alu 1 301 -11 2286 81 3 0 chr12 39962188 39962485 -103823970 - AluSp SINE Alu -15 298 1 2036 90 3 17 chr12 39963872 39964030 -103822425 - AluY SINE Alu -22 289 135 2247 81 3 0 chr12 39964030 39964327 -103822128 - AluSg SINE Alu -12 298 1 2036 90 3 17 chr12 39964327 39964458 -103821997 - AluY SINE Alu -176 135 4 2151 102 0 7 chr12 39964742 39965047 -103821408 + AluSx SINE Alu 1 303 -9 1987 129 0 22 chr12 39965051 39965368 -103821087 + AluSq SINE Alu 1 310 -3 797 244 0 44 chr12 39965458 39965663 -103820792 - AluJo SINE Alu 0 312 117 2233 105 0 3 chr12 39965682 39965995 -103820460 - AluSx SINE Alu 0 312 1 1198 168 35 73 chr12 39966112 39966262 -103820193 - AluJo SINE Alu -34 278 143 2311 79 3 3 chr12 39966262 39966565 -103819890 - AluSp SINE Alu -10 303 1 1198 168 35 73 chr12 39966565 39966700 -103819755 - AluJo SINE Alu -169 143 4 23 33 0 0 chr12 39966799 39966829 -103819626 + AT_rich Low_complexity Low_complexity 1 30 0 497 275 130 35 chr12 39966920 39967120 -103819335 - L1ME2 LINE L1 -35 6129 5911 381 294 108 21 chr12 39967117 39967311 -103819144 - L1MC4 LINE L1 -1031 7011 6801 * 417 243 27 0 chr12 39967321 39967432 -103819023 - AluSg/x SINE Alu 0 310 197 1496 127 9 4 chr12 39967432 39967660 -103818795 + AluSg/x SINE Alu 65 293 -17 787 134 0 39 chr12 39967676 39967803 -103818652 + AluJb SINE Alu 12 133 -179 402 241 57 88 chr12 39967845 39967906 -103818549 - L1MC5 LINE L1 -100 7861 7800 2387 56 3 13 chr12 39967906 39968211 -103818244 - AluY SINE Alu -9 302 1 402 241 57 88 chr12 39968211 39968377 -103818078 - L1MC5 LINE L1 -161 7800 7641 1982 130 0 16 chr12 39968986 39969294 -103817161 - AluSp SINE Alu -8 305 3 2184 97 0 7 chr12 39969305 39969605 -103816850 - AluSc SINE Alu -11 298 1 1663 140 26 0 chr12 39969608 39969907 -103816548 - AluSx SINE Alu 0 310 5 2084 125 10 0 chr12 39970518 39970822 -103815633 - AluSx SINE Alu -4 308 2 1913 138 7 7 chr12 39972557 39972854 -103813601 - AluSx SINE Alu -15 297 1 669 180 8 23 chr12 39972875 39973003 -103813452 - AluJo SINE Alu -178 134 9 2285 108 0 0 chr12 39973009 39973314 -103813141 - AluSx SINE Alu -7 305 1 872 217 0 24 chr12 39973315 39973481 -103812974 - AluJb SINE Alu -17 295 134 1103 159 0 71 chr12 39973804 39974030 -103812425 - AluSg/x SINE Alu -32 278 69 1785 129 42 3 chr12 39974294 39974580 -103811875 - AluSx SINE Alu -15 297 1 2036 96 4 0 chr12 39974620 39974900 -103811555 - AluSp SINE Alu -32 281 1 1682 81 0 69 chr12 39975009 39975270 -103811185 - AluY SINE Alu -3 308 66 1549 169 46 23 chr12 39975270 39975571 -103810884 - AluJb SINE Alu -3 309 1 669 269 72 19 chr12 39975621 39975829 -103810626 + MER20 DNA MER1_type 1 219 0 1829 133 65 0 chr12 39975906 39976199 -103810256 - AluSx SINE Alu 0 312 1 236 366 105 5 chr12 39976411 39976602 -103809853 - MIR SINE MIR -40 222 13 1785 136 14 17 chr12 39976604 39976898 -103809557 - AluSq SINE Alu -20 293 1 2418 70 0 10 chr12 39976932 39977246 -103809209 - AluY SINE Alu 0 311 1 2290 90 0 0 chr12 39977266 39977576 -103808879 - AluY SINE Alu -1 310 1 242 156 16 0 chr12 39979005 39979069 -103807386 + T-rich Low_complexity Low_complexity 1 65 0 189 0 0 0 chr12 39979552 39979573 -103806882 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1853 83 51 14 chr12 39981992 39982268 -103804187 + AluJb SINE Alu 1 286 -26 607 266 55 5 chr12 39991036 39991235 -103795220 + MER20 DNA MER1_type 3 211 -8 1191 205 103 22 chr12 39993083 39993356 -103793099 - AluJo SINE Alu -6 296 2 216 284 81 46 chr12 39993519 39993795 -103792660 - L2 LINE L2 -265 3007 2725 1991 120 23 0 chr12 39993829 39994130 -103792325 - AluSp SINE Alu -5 308 1 1112 127 0 0 chr12 39994131 39994289 -103792166 - AluSc SINE Alu -20 289 132 1535 138 0 117 chr12 39994290 39994444 -103792011 - AluSg SINE Alu -22 288 190 2193 63 28 0 chr12 39994444 39994730 -103791725 - AluY SINE Alu -17 294 1 1535 138 0 117 chr12 39994730 39994901 -103791554 - AluSg SINE Alu -120 190 1 2046 130 0 0 chr12 39994906 39995213 -103791242 - AluSg SINE Alu -3 307 1 629 197 333 9 chr12 39995220 39995433 -103791022 - AluJo SINE Alu -25 287 6 1084 82 13 25 chr12 39996313 39996471 -103789984 - AluSg/x SINE Alu -20 290 135 498 281 87 16 chr12 39996841 39997094 -103789361 + L2 LINE L2 2815 3085 -228 2003 130 0 3 chr12 39997115 39997415 -103789040 - AluJb SINE Alu -11 301 3 248 268 24 12 chr12 39997530 39997612 -103788843 - LTR67 LTR ERVL -61 496 414 2307 100 3 0 chr12 39997874 39998185 -103788270 - AluSp SINE Alu -1 312 1 242 293 43 104 chr12 39998212 39998376 -103788079 - LTR67 LTR ERVL -387 170 17 230 206 22 130 chr12 39998618 39998710 -103787745 - MER5B DNA MER1_type -10 168 87 1944 105 0 8 chr12 39998723 39998989 -103787466 + AluSq SINE Alu 1 264 -49 334 208 135 10 chr12 39999043 39999139 -103787316 - MER5B DNA MER1_type -70 108 1 220 267 33 0 chr12 39999134 39999194 -103787261 - MER5A DNA MER1_type 0 189 128 * 809 175 124 11 chr12 39999220 39999397 -103787058 - AluJb SINE Alu -113 199 3 2049 134 10 16 chr12 39999423 39999555 -103786900 + AluSx SINE Alu 1 132 -180 2285 88 0 13 chr12 39999555 39999863 -103786592 + AluSp SINE Alu 1 304 -9 2227 98 0 0 chr12 39999864 40000161 -103786294 + AluY SINE Alu 1 297 -14 2049 134 10 16 chr12 40000161 40000339 -103786116 + AluSx SINE Alu 131 311 -1 919 195 0 0 chr12 40000666 40000840 -103785615 - AluJo/FRAM SINE Alu -9 303 130 2235 78 16 13 chr12 40000840 40001149 -103785306 - AluSg SINE Alu 0 310 1 2218 102 3 16 chr12 40001162 40001476 -103784979 - AluSp SINE Alu -3 310 1 2431 63 0 0 chr12 40001488 40001791 -103784664 - AluY SINE Alu -8 303 1 223 319 118 15 chr12 40001791 40001921 -103784534 - MIR SINE MIR -71 191 48 236 346 40 0 chr12 40002453 40002554 -103783901 - L2 LINE L2 -6 3307 3203 296 358 29 7 chr12 40002976 40003113 -103783342 + MIR SINE MIR 67 206 -56 799 170 0 15 chr12 40003179 40003314 -103783141 + FLAM_C SINE Alu 1 133 0 2309 96 3 0 chr12 40003414 40003726 -103782729 - AluSp SINE Alu 0 313 1 2004 116 37 0 chr12 40003726 40004019 -103782436 - AluSx SINE Alu -7 305 1 261 51 26 0 chr12 40004187 40004226 -103782229 + Alu SINE Alu 2 41 -259 1733 128 8 0 chr12 40004226 40004476 -103781979 - AluSq SINE Alu -61 252 1 2219 110 0 19 chr12 40004486 40004804 -103781651 - AluSx SINE Alu 0 312 1 569 262 8 8 chr12 40004807 40004929 -103781526 - AluJo/FLAM SINE Alu -185 127 6 2316 87 0 3 chr12 40004941 40005251 -103781204 - AluY SINE Alu -2 309 1 2343 68 3 0 chr12 40005251 40005544 -103780911 - AluSp SINE Alu -19 294 1 2149 107 3 0 chr12 40005574 40005872 -103780583 - AluSx SINE Alu -13 299 1 2125 124 3 6 chr12 40005882 40006196 -103780259 - AluSq SINE Alu 0 313 1 2010 145 0 0 chr12 40006197 40006493 -103779962 - AluSx SINE Alu -16 296 1 2372 73 3 10 chr12 40006498 40006811 -103779644 - AluY SINE Alu 0 311 1 657 151 0 48 chr12 40006836 40006962 -103779493 - FLAM_C SINE Alu -2 141 22 2116 122 0 0 chr12 40007033 40007327 -103779128 - AluSx SINE Alu -15 297 4 1981 135 10 13 chr12 40007327 40007639 -103778816 - AluSx SINE Alu -1 311 1 227 344 92 31 chr12 40007718 40007881 -103778574 - L2 LINE L2 -534 2780 2608 182 31 0 62 chr12 40008474 40008506 -103777949 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 498 101 0 0 chr12 40008515 40008584 -103777871 - AluS SINE Alu -244 69 1 2150 83 0 55 chr12 40008594 40008920 -103777535 - AluSg SINE Alu -2 308 1 760 244 19 0 chr12 40008920 40009080 -103777375 - FRAM SINE Alu -15 161 1 2263 90 10 6 chr12 40009411 40009722 -103776733 - AluSq SINE Alu -1 312 1 339 315 99 37 chr12 40009764 40009926 -103776529 + MIR SINE MIR 7 178 -30 1578 183 55 14 chr12 40009972 40010089 -103776366 + AluJo SINE Alu 1 112 -190 2268 95 0 13 chr12 40010089 40010223 -103776232 + AluSg SINE Alu 1 135 -175 2301 74 0 7 chr12 40010223 40010519 -103775936 + AluY SINE Alu 1 294 -17 2268 95 0 13 chr12 40010519 40010690 -103775765 + AluSg SINE Alu 135 302 -8 1578 183 55 14 chr12 40010690 40010862 -103775593 + AluJo SINE Alu 112 302 0 2179 114 0 0 chr12 40010961 40011269 -103775186 - AluSq SINE Alu 0 313 6 427 192 0 0 chr12 40011303 40011381 -103775074 + MER46C DNA MER2_type 258 335 -3 1232 153 0 5 chr12 40011540 40011729 -103774726 - AluSx SINE Alu -123 189 2 2268 85 3 0 chr12 40011729 40012022 -103774433 - AluSg SINE Alu -16 294 1 1190 78 11 28 chr12 40012024 40012048 -103774407 - L1PA8 LINE L1 -1 6171 6148 2249 106 0 3 chr12 40012048 40012351 -103774104 + AluSq SINE Alu 1 302 -11 1190 78 11 28 chr12 40012351 40012506 -103773949 - L1PA8 LINE L1 -24 6148 5995 441 250 95 42 chr12 40012511 40012563 -103773892 + MER46C DNA MER2_type 159 207 -131 1951 125 0 4 chr12 40012563 40012879 -103773576 - AluSg SINE Alu 0 315 1 2014 130 0 0 chr12 40012880 40013165 -103773290 - AluSx SINE Alu -22 290 6 441 250 95 42 chr12 40013165 40013277 -103773178 + MER46C DNA MER2_type 206 335 -3 209 211 0 0 chr12 40013306 40013344 -103773111 + L2 LINE L2 3225 3262 -10 302 152 0 25 chr12 40013397 40013476 -103772979 + (TCTCTG)n Simple_repeat Simple_repeat 1 77 0 219 69 0 0 chr12 40014692 40014721 -103771734 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 363 252 26 26 chr12 40014980 40015095 -103771360 - MIR SINE MIR -80 182 68 2381 93 0 0 chr12 40015156 40015466 -103770989 - AluSx SINE Alu -2 310 1 551 133 20 0 chr12 40015466 40015564 -103770891 - AluJb SINE Alu -2 310 211 263 292 22 11 chr12 40015591 40015680 -103770775 - MIR SINE MIR -88 174 85 1440 138 24 119 chr12 40015682 40016053 -103770402 - MLT1A1 LTR MaLR -2 363 28 1101 141 141 0 chr12 40016169 40016353 -103770102 + AluJb SINE Alu 84 293 -19 1047 137 11 6 chr12 40016381 40016556 -103769899 + AluSg/x SINE Alu 123 298 -14 2188 110 0 0 chr12 40016567 40016866 -103769589 + AluSg SINE Alu 9 307 -3 2227 106 3 0 chr12 40016868 40017169 -103769286 + AluSx SINE Alu 3 304 -8 333 291 20 81 chr12 40017228 40017376 -103769079 - L1MC4a LINE L1 -1849 5959 5821 2111 105 0 3 chr12 40017381 40017689 -103768766 - AluSq SINE Alu 0 308 2 1506 183 10 27 chr12 40018007 40018307 -103768148 + AluJo SINE Alu 1 295 -17 2183 99 10 3 chr12 40018313 40018615 -103767840 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr12 40019629 40019651 -103766804 + GC_rich Low_complexity Low_complexity 1 22 0 213 288 0 38 chr12 40021597 40021677 -103764778 + MIR SINE MIR 64 140 -122 2153 122 0 0 chr12 40021688 40022000 -103764455 - AluSx SINE Alu 0 312 1 1192 179 4 25 chr12 40022000 40022235 -103764220 + AluJb SINE Alu 71 300 -12 181 143 0 0 chr12 40022246 40022274 -103764181 + L2 LINE L2 3255 3282 -31 358 258 30 22 chr12 40022372 40022542 -103763913 - MIR SINE MIR -62 146 3 2061 115 0 0 chr12 40022658 40022944 -103763511 - AluSx SINE Alu -26 286 1 789 243 47 0 chr12 40023049 40023218 -103763237 - AluJo SINE Alu -30 282 106 296 319 35 9 chr12 40023427 40023543 -103762912 + MIR SINE MIR 41 159 -103 1508 87 5 0 chr12 40023935 40024130 -103762325 - AluY SINE Alu -115 196 1 1787 148 3 7 chr12 40024130 40024414 -103762041 - AluJo SINE Alu -29 283 1 2137 117 3 10 chr12 40024447 40024620 -103761835 - AluSx SINE Alu -5 307 135 2336 70 7 0 chr12 40024620 40024920 -103761535 - AluSp SINE Alu -11 302 1 2137 117 3 10 chr12 40024920 40025055 -103761400 - AluSx SINE Alu -177 135 1 196 287 183 17 chr12 40025058 40025173 -103761282 + MIR SINE MIR 129 262 0 * 431 269 243 53 chr12 40025171 40025310 -103761145 - L2 LINE L2 -1 3312 3201 1802 123 36 0 chr12 40025310 40025586 -103760869 + AluJo SINE Alu 12 297 -15 431 269 243 53 chr12 40025586 40025656 -103760799 - L2 LINE L2 -112 3201 3146 2366 81 0 0 chr12 40025656 40025964 -103760491 - AluY SINE Alu -3 308 1 431 269 243 53 chr12 40025964 40026091 -103760364 - L2 LINE L2 -167 3146 2911 2195 126 0 0 chr12 40026653 40026962 -103759493 + AluSg SINE Alu 1 309 -1 376 300 18 0 chr12 40027073 40027183 -103759272 + MIR SINE MIR 97 208 -54 1567 156 3 59 chr12 40027268 40027426 -103759029 - AluJo SINE Alu -39 273 137 2253 75 0 3 chr12 40027426 40027718 -103758737 + AluSc SINE Alu 1 291 -18 1567 156 3 59 chr12 40027718 40027848 -103758607 - AluJo SINE Alu -175 137 1 238 282 47 0 chr12 40027881 40027966 -103758489 - L2 LINE L2 -2 3311 3223 328 363 66 35 chr12 40028018 40028125 -103758330 + L1ME4a LINE L1 5645 5747 -374 1887 81 4 0 chr12 40028125 40028372 -103758083 + AluSx SINE Alu 57 304 -8 328 363 66 35 chr12 40028372 40028490 -103757965 + L1ME4a LINE L1 5747 5877 -244 1976 155 0 13 chr12 40028841 40029157 -103757298 - AluJb SINE Alu 0 312 1 304 314 49 10 chr12 40029760 40029862 -103756593 - MIR SINE MIR -105 157 52 1848 154 10 0 chr12 40030153 40030445 -103756010 + AluJo SINE Alu 1 295 -17 757 100 154 0 chr12 40030445 40030555 -103755900 + AluSg SINE Alu 1 127 -183 * 1032 8 0 0 chr12 40030554 40030673 -103755782 + AluY SINE Alu 184 302 -9 1153 109 0 52 chr12 40030673 40030866 -103755589 + AluSq SINE Alu 121 303 -10 208 313 0 0 chr12 40030975 40031039 -103755416 - L2 LINE L2 -321 2992 2929 1772 167 3 3 chr12 40031352 40031651 -103754804 - AluJo SINE Alu -13 299 1 1661 164 14 10 chr12 40031685 40031978 -103754477 + AluJb SINE Alu 1 294 -18 2265 103 3 3 chr12 40032829 40033141 -103753314 - AluSx SINE Alu 0 312 1 2265 75 10 3 chr12 40033441 40033736 -103752719 - AluSq SINE Alu -12 301 5 2436 57 7 0 chr12 40033808 40034106 -103752349 + AluY SINE Alu 1 300 -11 25 0 0 0 chr12 40034189 40034214 -103752241 + AT_rich Low_complexity Low_complexity 1 25 0 2370 91 0 0 chr12 40034361 40034669 -103751786 - AluSq SINE Alu -3 310 3 1780 163 0 3 chr12 40034679 40034980 -103751475 - AluSx SINE Alu -12 300 1 354 177 52 21 chr12 40035008 40035104 -103751351 - L1MD3 LINE L1 -24 7971 7873 587 141 54 0 chr12 40035113 40035205 -103751250 + FLAM_A SINE Alu 29 125 -17 2190 112 0 3 chr12 40035212 40035515 -103750940 + AluSx SINE Alu 1 302 -10 1694 170 45 0 chr12 40035561 40035850 -103750605 + AluSx SINE Alu 1 302 -10 1855 136 34 0 chr12 40035854 40036149 -103750306 + AluJo SINE Alu 1 305 -7 29 0 0 0 chr12 40036196 40036225 -103750230 + AT_rich Low_complexity Low_complexity 1 29 0 1031 179 109 116 chr12 40036292 40036521 -103749934 - L1MD3 LINE L1 -219 7776 7550 2191 79 16 0 chr12 40036521 40036825 -103749630 - AluY SINE Alu -2 309 1 1031 179 109 116 chr12 40036825 40036991 -103749464 - L1MD3 LINE L1 -445 7550 7384 1676 167 23 10 chr12 40037001 40037301 -103749154 - AluJb SINE Alu -8 304 1 463 252 95 0 chr12 40037303 40037450 -103749005 - L1M4 LINE L1 -1224 4922 4762 2178 104 23 7 chr12 40037475 40037782 -103748673 + AluSx SINE Alu 1 312 0 715 152 18 0 chr12 40037783 40037895 -103748560 - AluJb SINE Alu -194 118 5 744 154 34 0 chr12 40037907 40038056 -103748399 - L1M4 LINE L1 -1386 4760 4607 231 157 0 78 chr12 40038090 40038164 -103748291 - Alu SINE Alu 0 303 234 * 277 148 0 22 chr12 40038132 40038190 -103748265 - Alu SINE Alu -260 42 2 252 321 78 42 chr12 40038218 40038353 -103748102 + L2 LINE L2 2584 2730 -584 1784 142 3 3 chr12 40038353 40038635 -103747820 + AluJo SINE Alu 1 282 -30 252 321 78 42 chr12 40038635 40038692 -103747763 + L2 LINE L2 2730 2783 -531 753 271 72 49 chr12 40038702 40038974 -103747481 + L2 LINE L2 2888 3173 -140 2099 97 13 3 chr12 40038974 40039272 -103747183 - AluSx SINE Alu -11 301 1 753 271 72 49 chr12 40039272 40039390 -103747065 + L2 LINE L2 3173 3287 -26 813 208 0 0 chr12 40039599 40039775 -103746680 + AluSg/x SINE Alu 137 312 0 850 162 0 0 chr12 40039822 40039964 -103746491 + FLAM_C SINE Alu 1 142 -1 2098 111 0 26 chr12 40040067 40040374 -103746081 + AluSq SINE Alu 1 299 -14 2363 64 0 16 chr12 40040374 40040685 -103745770 + AluY SINE Alu 1 306 -5 1562 167 67 6 chr12 40040748 40041060 -103745395 - L1MB7 LINE L1 -10 6174 5844 2047 107 6 28 chr12 40041060 40041378 -103745077 + AluSx SINE Alu 1 311 -1 2810 216 70 29 chr12 40041378 40041852 -103744603 - L1M4 LINE L1 -2600 3546 3093 2256 99 0 3 chr12 40041852 40042164 -103744291 - AluSx SINE Alu -1 311 1 2810 216 70 29 chr12 40042164 40042635 -103743820 - L1M4 LINE L1 -3053 3093 2562 246 154 0 0 chr12 40042667 40042706 -103743749 - L1M4 LINE L1 -3572 2574 2536 1830 168 10 3 chr12 40042706 40043016 -103743439 - AluJo SINE Alu 0 312 1 2476 52 0 7 chr12 40043031 40043338 -103743117 - AluY SINE Alu -6 305 1 357 206 0 17 chr12 40043362 40043515 -103742940 + CT-rich Low_complexity Low_complexity 1 150 0 236 317 69 30 chr12 40043899 40044000 -103742455 - MIR SINE MIR -51 211 107 281 238 21 15 chr12 40044245 40044322 -103742133 + MIR SINE MIR 78 159 -49 1937 139 26 0 chr12 40044391 40044693 -103741762 - AluJb SINE Alu -2 310 1 421 244 70 9 chr12 40044713 40044828 -103741627 - L2 LINE L2 -7 3265 3144 1892 104 39 42 chr12 40044880 40045016 -103741439 + AluSx SINE Alu 1 136 -176 2507 71 0 0 chr12 40045016 40045325 -103741130 + AluY SINE Alu 1 309 -2 1892 104 39 42 chr12 40045325 40045496 -103740959 + AluSx SINE Alu 136 307 -5 1010 173 0 0 chr12 40045496 40045658 -103740797 + AluSg/x SINE Alu 132 293 -17 241 297 54 0 chr12 40046734 40046808 -103739647 - L1MB7 LINE L1 -340 5781 5704 1286 126 146 32 chr12 40046947 40047194 -103739261 + AluJo SINE Alu 18 292 -20 456 287 103 51 chr12 40047198 40047445 -103739010 - L2 LINE L2 -147 3166 2896 2083 116 7 7 chr12 40047445 40047748 -103738707 - AluSx SINE Alu -9 303 1 456 287 103 51 chr12 40047748 40047831 -103738624 - L2 LINE L2 -417 2896 2819 2079 113 14 0 chr12 40047909 40048202 -103738253 - AluSp SINE Alu -11 302 6 2183 104 6 25 chr12 40048206 40048524 -103737931 - AluSx SINE Alu 0 312 1 705 150 87 39 chr12 40048527 40048654 -103737801 - AluJo/FLAM SINE Alu -169 133 1 352 253 33 0 chr12 40048718 40048809 -103737646 - MIR SINE MIR -77 185 92 187 379 10 10 chr12 40049120 40049223 -103737232 - L2 LINE L2 -23 3290 3188 822 319 101 4 chr12 40049411 40049875 -103736580 - L2 LINE L2 -340 2974 2466 191 274 95 0 chr12 40050158 40050242 -103736213 + MIR SINE MIR 53 144 -118 418 309 12 31 chr12 40051011 40051173 -103735282 - MIR SINE MIR -91 171 13 * 435 233 0 0 chr12 40051164 40051250 -103735205 - L2 LINE L2 -2 3311 3226 197 257 14 29 chr12 40051363 40051433 -103735022 - L2 LINE L2 -280 2992 2924 1832 166 0 0 chr12 40051684 40051979 -103734476 + AluJo SINE Alu 1 295 -17 768 229 25 0 chr12 40051979 40052136 -103734319 + AluJo/FRAM SINE Alu 134 294 -18 1709 94 121 15 chr12 40052136 40052401 -103734054 + AluSg SINE Alu 1 293 -17 180 250 17 33 chr12 40052402 40052462 -103733993 - L2 LINE L2 -10 3303 3245 316 299 45 8 chr12 40052682 40052816 -103733639 - MIR SINE MIR -93 169 31 3609 102 28 0 chr12 40053298 40053797 -103732658 - LTR10D LTR ERV1 0 513 1 328 252 103 0 chr12 40054153 40054260 -103732195 + MIR SINE MIR 80 197 -65 346 184 17 0 chr12 40054260 40054338 -103732117 + FLAM SINE Alu 74 125 -8 1202 182 101 52 chr12 40054346 40054632 -103731823 + AluJo SINE Alu 1 300 -2 197 314 0 29 chr12 40054633 40054703 -103731752 + MIR SINE MIR 192 259 -3 280 171 0 29 chr12 40054866 40054936 -103731519 + C-rich Low_complexity Low_complexity 3 70 0 1970 138 7 3 chr12 40055139 40055443 -103731012 - AluSq SINE Alu -7 306 2 2057 99 14 3 chr12 40055745 40056038 -103730417 - AluSc SINE Alu -13 296 1 580 256 30 55 chr12 40056042 40056068 -103730387 - L1ME2 LINE L1 -38 6126 6101 1822 152 7 7 chr12 40056068 40056371 -103730084 - AluJo SINE Alu -1 311 9 580 256 30 55 chr12 40056371 40056543 -103729912 - L1ME2 LINE L1 -63 6101 5933 611 285 20 5 chr12 40056566 40056766 -103729689 + L1ME1 LINE L1 5648 5850 -316 1124 127 12 0 chr12 40056948 40057114 -103729341 - AluSg/x SINE Alu -10 300 133 2137 109 0 28 chr12 40057130 40057451 -103729004 - AluSx SINE Alu 0 312 1 225 262 0 0 chr12 40057919 40057980 -103728475 + MIR SINE MIR 84 144 -118 339 291 90 64 chr12 40058994 40059150 -103727305 + MER20B DNA MER1_type 77 242 -541 2263 84 13 6 chr12 40059150 40059461 -103726994 + AluSq SINE Alu 1 313 0 339 291 90 64 chr12 40059461 40059538 -103726917 + MER20B DNA MER1_type 242 316 -467 673 121 16 16 chr12 40059726 40059850 -103726605 + CT-rich Low_complexity Low_complexity 1 124 0 2174 86 7 3 chr12 40059856 40060147 -103726308 - AluSx SINE Alu -20 292 1 1016 192 50 0 chr12 40060247 40060409 -103726046 - AluJb SINE Alu -18 294 119 252 0 0 0 chr12 40060409 40060437 -103726018 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 1016 192 50 0 chr12 40060437 40060472 -103725983 - AluJb SINE Alu -193 119 87 228 195 0 0 chr12 40060500 40060541 -103725914 - MER3 DNA MER1_type -153 56 16 327 195 134 0 chr12 40060549 40060631 -103725824 - L1MB8 LINE L1 -156 6022 5930 1950 124 3 23 chr12 40061332 40061639 -103724816 - AluSx SINE Alu -11 301 1 1436 164 23 71 chr12 40061961 40062271 -103724184 - AluJo SINE Alu -12 300 6 2172 89 0 0 chr12 40062289 40062602 -103723853 - AluSc SINE Alu 0 313 1 229 259 101 6 chr12 40062950 40063067 -103723388 - MIR SINE MIR -58 150 17 1957 117 20 10 chr12 40063354 40063653 -103722802 - AluSx SINE Alu -10 302 1 1620 5 0 0 chr12 40064216 40064420 -103722035 + (TTCC)n Simple_repeat Simple_repeat 1 204 0 1616 114 35 38 chr12 40164997 40165286 -103621169 - SVA Other Other -1098 288 1 314 196 124 21 chr12 40165334 40165431 -103621024 + L1MC4a LINE L1 6074 6180 -1628 237 333 0 0 chr12 40165813 40165888 -103620567 - L2 LINE L2 -5 3267 3193 198 366 20 10 chr12 40166098 40166199 -103620256 - MIR SINE MIR -133 129 28 198 0 0 0 chr12 40167329 40167351 -103619104 + (CCA)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr12 40167886 40167916 -103618539 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 40167916 40167937 -103618518 + GC_rich Low_complexity Low_complexity 1 21 0 1965 130 14 0 chr12 40168051 40168335 -103618120 - AluSx SINE Alu -24 288 1 1470 189 0 50 chr12 40168777 40169078 -103617377 + AluJb SINE Alu 12 297 -15 579 121 0 0 chr12 40169832 40169915 -103616540 - AluY SINE Alu -227 84 2 201 263 337 0 chr12 40169916 40170011 -103616444 - L2 LINE L2 -6 3307 3181 1748 175 3 16 chr12 40170234 40170548 -103615907 + AluJb SINE Alu 1 310 -2 2323 92 0 3 chr12 40170576 40170870 -103615585 + AluSg SINE Alu 1 293 -17 343 218 36 91 chr12 40170876 40170986 -103615469 - MIR SINE MIR -151 111 8 239 282 137 26 chr12 40171476 40171593 -103614862 - L2 LINE L2 -22 3250 3121 3281 250 76 28 chr12 40171756 40172207 -103614248 - L1M4 LINE L1 -1229 4917 4489 2149 120 0 17 chr12 40172207 40172508 -103613947 - AluSx SINE Alu -16 296 1 3281 250 76 28 chr12 40172508 40173216 -103613239 - L1M4 LINE L1 -1657 4489 3703 449 155 19 10 chr12 40173219 40173322 -103613133 - AluSp/q SINE Alu -15 298 195 298 290 0 11 chr12 40175327 40175420 -103611035 - MIR SINE MIR -4 258 167 1486 201 7 27 chr12 40175423 40175716 -103610739 - AluJo SINE Alu -24 288 2 183 184 0 0 chr12 40177328 40177366 -103609089 + (TA)n Simple_repeat Simple_repeat 1 38 0 499 232 118 16 chr12 40177371 40177617 -103608838 - Charlie7 DNA MER1_type -489 2123 1853 1302 72 0 0 chr12 40177678 40177887 -103608568 + AluSc SINE Alu 128 336 0 363 230 183 0 chr12 40177887 40178013 -103608442 - Charlie7 DNA MER1_type -764 1848 1700 2166 114 0 10 chr12 40178613 40178911 -103607544 + AluSx SINE Alu 1 295 -17 664 236 6 32 chr12 40180670 40180827 -103605628 - FRAM SINE Alu -24 152 1 1426 216 137 12 chr12 40181453 40181870 -103604585 - L1MC4 LINE L1 -13 8029 7561 715 224 95 76 chr12 40181883 40182187 -103604268 - L1ME2 LINE L1 -9 6155 5846 477 296 37 7 chr12 40186717 40186852 -103599603 - MIR SINE MIR -106 156 18 2038 128 14 7 chr12 40186976 40187272 -103599183 + AluSx SINE Alu 1 298 -14 1209 267 109 14 chr12 40187974 40187994 -103598461 - L2 LINE L2 0 3313 3296 2063 141 3 0 chr12 40187994 40188300 -103598155 - AluSq SINE Alu -6 307 1 1209 267 109 14 chr12 40188300 40188709 -103597746 - L2 LINE L2 -17 3296 2843 1811 69 37 8 chr12 40188727 40188972 -103597483 + AluY SINE Alu 55 306 -5 264 256 208 24 chr12 40188986 40189154 -103597301 + MER102a DNA MER1_type 128 326 -4 215 298 0 36 chr12 40189184 40189268 -103597187 + MIR SINE MIR 18 98 -164 281 45 0 23 chr12 40189278 40189322 -103597133 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 256 45 0 45 chr12 40189322 40189366 -103597089 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 1360 203 19 38 chr12 40189368 40189543 -103596912 - AluJo SINE Alu 0 312 144 2240 82 3 0 chr12 40189543 40189835 -103596620 - AluSg SINE Alu -17 293 1 1360 203 19 38 chr12 40189835 40189975 -103596480 - AluJo SINE Alu -168 144 3 287 309 8 24 chr12 40189977 40190103 -103596352 + MIR SINE MIR 91 214 -48 366 274 32 0 chr12 40191885 40191980 -103594475 + MIR SINE MIR 81 178 -84 2367 71 3 10 chr12 40192409 40192717 -103593738 - AluSc SINE Alu -3 306 1 412 287 83 6 chr12 40193712 40193869 -103592586 - MIR3 SINE MIR -24 184 16 688 233 48 56 chr12 40194260 40194446 -103592009 + MIR SINE MIR 2 187 -75 2139 82 9 38 chr12 40194446 40194763 -103591692 + AluSx SINE Alu 1 308 -4 688 233 48 56 chr12 40194763 40194825 -103591630 + MIR SINE MIR 187 248 -14 383 267 153 8 chr12 40194872 40195003 -103591452 - MIR3 SINE MIR -18 190 41 2115 107 3 23 chr12 40197355 40197665 -103588790 - AluSp SINE Alu -9 304 1 2285 98 0 0 chr12 40197735 40198032 -103588423 - AluSx SINE Alu -15 297 1 1664 207 44 53 chr12 40198044 40198518 -103587937 - L2 LINE L2 -1667 1647 1178 1119 239 153 65 chr12 40198518 40199054 -103587401 - L2 LINE L2 -1509 1805 1223 807 153 23 15 chr12 40199724 40199855 -103586600 + FLAM_C SINE Alu 2 133 0 392 292 130 32 chr12 40199921 40200075 -103586380 - MER102a DNA MER1_type -9 321 153 1943 123 0 0 chr12 40200077 40200346 -103586109 - AluSx SINE Alu -16 296 28 686 115 10 0 chr12 40200348 40200444 -103586011 + AluSg SINE Alu 2 98 -212 353 211 63 32 chr12 40202407 40202502 -103583953 - L2 LINE L2 -32 3240 3143 218 316 0 0 chr12 40203595 40203652 -103582803 - MIR SINE MIR -116 92 36 694 289 34 5 chr12 40203760 40203964 -103582491 + MIR SINE MIR 48 257 -5 542 215 220 10 chr12 40203892 40204084 -103582371 - MIR SINE MIR -1 261 31 * 233 206 15 73 chr12 40204086 40204154 -103582301 + MIR SINE MIR 187 250 -12 502 208 19 0 chr12 40206218 40206324 -103580131 - MIR SINE MIR -108 154 47 705 283 42 17 chr12 40206407 40206577 -103579878 + MIR SINE MIR 13 192 -70 2095 111 0 41 chr12 40206577 40206719 -103579736 + AluSg SINE Alu 2 148 -162 2368 62 3 13 chr12 40206719 40207025 -103579430 + AluY SINE Alu 1 303 -8 2095 111 0 41 chr12 40207025 40207198 -103579257 + AluSg SINE Alu 148 304 -6 705 283 42 17 chr12 40207198 40207267 -103579188 + MIR SINE MIR 192 258 -4 197 50 0 75 chr12 40207325 40207365 -103579090 + (T)n Simple_repeat Simple_repeat 1 37 0 1447 107 5 0 chr12 40207468 40207673 -103578782 + AluSg SINE Alu 103 308 -4 723 210 0 21 chr12 40207675 40207818 -103578637 - FRAM SINE Alu -36 140 1 578 202 48 8 chr12 40207833 40207957 -103578498 - MER90 LTR ERV1 -81 533 405 713 182 23 0 chr12 40207957 40208089 -103578366 + AluSg/x SINE Alu 175 309 0 1251 207 50 28 chr12 40208108 40208431 -103578024 - MER90 LTR ERV1 -245 330 1 2165 99 10 13 chr12 40208747 40209059 -103577396 + AluSx SINE Alu 1 311 -1 1832 131 7 24 chr12 40209168 40209466 -103576989 + AluJb SINE Alu 1 293 -19 2243 99 7 0 chr12 40209886 40210189 -103576266 - AluSx SINE Alu -7 305 1 265 130 65 0 chr12 40210437 40210483 -103575972 + AluSp SINE Alu 123 171 -132 680 110 60 0 chr12 40210483 40210583 -103575872 + AluSg/x SINE Alu 103 208 -102 180 0 0 0 chr12 40210605 40210625 -103575830 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 297 283 89 73 chr12 40210641 40210690 -103575765 + L2 LINE L2 2714 2761 -553 1717 133 10 68 chr12 40210690 40210999 -103575456 - AluJb SINE Alu -21 291 1 1826 150 0 16 chr12 40210999 40211304 -103575151 - AluJo SINE Alu -11 301 1 297 283 89 73 chr12 40211304 40211444 -103575011 + L2 LINE L2 2760 2907 -407 254 298 0 12 chr12 40211445 40211529 -103574926 + MER112 DNA MER1_type 2 84 -176 347 200 156 0 chr12 40211574 40211654 -103574801 + MER112 DNA MER1_type 66 132 -128 2232 84 37 0 chr12 40211654 40211952 -103574503 - AluSc SINE Alu 0 309 1 347 200 156 0 chr12 40211952 40212006 -103574449 + MER112 DNA MER1_type 132 221 -39 534 277 153 59 chr12 40212028 40212382 -103574073 + L2 LINE L2 2927 3313 0 217 319 53 0 chr12 40212385 40212479 -103573976 + MIR3 SINE MIR 91 189 -19 376 210 29 123 chr12 40212851 40212970 -103573485 + MIR SINE MIR 8 114 -148 2194 93 0 3 chr12 40212970 40213261 -103573194 - AluSg SINE Alu -20 290 1 376 210 29 123 chr12 40213261 40213279 -103573176 + MIR SINE MIR 114 132 -130 2067 143 0 13 chr12 40213287 40213602 -103572853 - AluSx SINE Alu 0 312 2 289 274 36 12 chr12 40213792 40213876 -103572579 + MIR SINE MIR 46 131 -131 1811 128 0 0 chr12 40214063 40214329 -103572126 + AluJo SINE Alu 26 291 -21 1981 120 0 27 chr12 40214332 40214633 -103571822 + AluSq SINE Alu 2 294 -19 211 224 0 41 chr12 40214838 40214887 -103571568 + G-rich Low_complexity Low_complexity 4 50 0 626 190 0 0 chr12 40214995 40215095 -103571360 - FLAM_A SINE Alu -42 100 1 976 99 8 0 chr12 40215291 40215422 -103571033 + FLAM_C SINE Alu 2 133 0 281 188 0 0 chr12 40215438 40215486 -103570969 + MER44D DNA MER2_type 1 48 -657 1582 141 7 41 chr12 40215535 40215569 -103570886 + MER44D DNA MER2_type 49 83 -650 2309 77 6 13 chr12 40215569 40215880 -103570575 + AluSp SINE Alu 1 309 -4 1582 141 7 41 chr12 40215880 40216115 -103570340 + MER44D DNA MER2_type 83 309 -424 1092 125 12 0 chr12 40216115 40216283 -103570172 + AluSg/x SINE Alu 134 303 -9 1535 93 4 54 chr12 40216283 40216414 -103570041 + MER44D DNA MER2_type 301 437 -2050 2198 78 10 7 chr12 40216414 40216708 -103569747 + AluSc SINE Alu 1 295 -14 1535 93 4 54 chr12 40216708 40216835 -103569620 + MER44D DNA MER2_type 437 601 -4 811 219 122 0 chr12 40216846 40217051 -103569404 - MIR SINE MIR -30 232 3 227 270 48 0 chr12 40217073 40217136 -103569319 - tRNA-Gly-GGG tRNA tRNA -3 71 6 2293 89 3 13 chr12 40217307 40217621 -103568834 + AluSq SINE Alu 1 311 -2 990 176 5 75 chr12 40217630 40217818 -103568637 + FAM SINE Alu 1 175 0 189 340 135 28 chr12 40217859 40218147 -103568308 + L2 LINE L2 2804 3122 -150 806 174 0 14 chr12 40218183 40218327 -103568128 + FLAM_C SINE Alu 2 143 0 338 314 131 0 chr12 40218327 40218464 -103567991 + L2 LINE L2 3152 3306 -7 538 313 125 9 chr12 40218472 40218696 -103567759 - L3 LINE CR1 -21 1556 1307 2343 97 0 0 chr12 40218894 40219204 -103567251 - AluSx SINE Alu -2 310 1 2018 108 0 3 chr12 40219487 40219774 -103566681 - AluSg SINE Alu -24 286 1 507 268 66 20 chr12 40219986 40220184 -103566271 + MIR SINE MIR 36 242 -20 539 223 62 0 chr12 40221485 40221597 -103564858 + MIR SINE MIR 59 177 -85 2847 169 35 53 chr12 40222419 40222594 -103563861 - MER41D LTR ERV1 0 557 380 2211 103 3 10 chr12 40222594 40222904 -103563551 - AluSq SINE Alu -5 308 1 2847 169 35 53 chr12 40222904 40223218 -103563237 - MER41D LTR ERV1 -177 380 77 1855 145 3 13 chr12 40223218 40223528 -103562927 - AluSx SINE Alu -5 307 1 2847 169 35 53 chr12 40223528 40223604 -103562851 - MER41D LTR ERV1 -480 77 1 1865 188 268 24 chr12 40223726 40224226 -103562229 - LTR29 LTR ERV1 0 622 1 1415 368 0 17 chr12 40224486 40224782 -103561673 + AluSq SINE Alu 3 293 -20 2118 115 10 0 chr12 40224790 40225095 -103561360 - AluSx SINE Alu -4 308 1 285 29 0 0 chr12 40225568 40225602 -103560853 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1845 143 3 3 chr12 40225607 40225893 -103560562 - AluJb SINE Alu -21 291 6 226 170 21 0 chr12 40225893 40225940 -103560515 - L1MB8 LINE L1 -33 6145 6098 * 890 170 14 30 chr12 40225916 40226132 -103560323 - L1MB8 LINE L1 -163 6015 5827 2041 96 4 4 chr12 40226149 40226470 -103559985 - AluSx SINE Alu 0 321 1 804 174 0 14 chr12 40226515 40226653 -103559802 - AluJo SINE Alu -176 136 1 180 0 0 0 chr12 40226727 40226747 -103559708 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2049 113 0 0 chr12 40226753 40227067 -103559388 + AluSp SINE Alu 1 314 0 510 299 26 7 chr12 40227084 40227238 -103559217 - MIR3 SINE MIR -49 159 3 2251 106 0 0 chr12 40227663 40227966 -103558489 + AluSg SINE Alu 1 303 -7 2054 125 0 0 chr12 40228603 40228900 -103557555 + AluSx SINE Alu 5 301 -11 2351 93 0 0 chr12 40229142 40229444 -103557011 + AluSx SINE Alu 1 302 -10 2289 64 3 0 chr12 40229874 40230212 -103556243 + AluSp SINE Alu 1 339 0 841 115 0 83 chr12 40230307 40230463 -103555992 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr12 40230511 40230531 -103555924 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 239 0 0 chr12 40231144 40231190 -103555265 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 396 167 0 0 chr12 40232328 40232400 -103554055 + (CA)n Simple_repeat Simple_repeat 2 73 0 394 269 55 28 chr12 40234846 40234991 -103551464 - MIR3 SINE MIR -57 151 3 1749 126 7 52 chr12 40236081 40236391 -103550064 + AluJo SINE Alu 1 296 -16 2046 129 3 7 chr12 40236403 40236706 -103549749 + AluSx SINE Alu 3 304 -8 1201 113 0 6 chr12 40236706 40236874 -103549581 + AluSx SINE Alu 1 167 -145 1312 197 15 8 chr12 40236920 40237179 -103549276 - AluJb SINE Alu -51 261 1 1240 79 0 6 chr12 40237245 40237410 -103549045 - AluSq SINE Alu -32 281 118 1232 54 18 6 chr12 40237510 40237676 -103548779 + AluY SINE Alu 144 311 0 796 248 137 19 chr12 40237728 40237883 -103548572 - AluJo SINE Alu 0 302 167 26 74 0 0 chr12 40237883 40237937 -103548518 + AT_rich Low_complexity Low_complexity 1 54 0 796 248 137 19 chr12 40237937 40237998 -103548457 - AluJo SINE Alu -135 167 1 514 158 11 32 chr12 40237999 40238094 -103548361 - FLAM_A SINE Alu -49 93 1 215 205 218 39 chr12 40238095 40238173 -103548282 - MER5B DNA MER1_type -72 106 15 186 43 0 0 chr12 40238217 40238240 -103548215 + (A)n Simple_repeat Simple_repeat 1 23 0 824 153 0 8 chr12 40239548 40239679 -103546776 - FLAM_C SINE Alu 0 133 4 1087 181 62 19 chr12 40239867 40240077 -103546378 - MER20 DNA MER1_type 0 219 1 2073 93 4 0 chr12 40240384 40240687 -103545768 + AluSg SINE Alu 1 304 0 532 279 63 16 chr12 40240697 40240766 -103545689 - MIR SINE MIR -13 249 185 799 233 37 74 chr12 40240766 40240818 -103545637 - MIR SINE MIR -1 261 209 1665 131 36 49 chr12 40240818 40241123 -103545332 - AluJb SINE Alu -11 301 1 799 233 37 74 chr12 40241123 40241187 -103545268 - MIR SINE MIR -53 209 144 1879 94 73 0 chr12 40241187 40241341 -103545114 - AluSp SINE Alu -18 295 154 210 37 0 0 chr12 40241341 40241368 -103545087 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1879 94 73 0 chr12 40241368 40241488 -103544967 - AluSp SINE Alu -159 154 1 799 233 37 74 chr12 40241488 40241641 -103544814 - MIR SINE MIR -118 144 1 532 279 63 16 chr12 40241641 40241761 -103544694 - MIR SINE MIR -77 185 51 1626 181 17 0 chr12 40241891 40242182 -103544273 + AluJo SINE Alu 6 301 -11 2237 110 0 0 chr12 40242182 40242491 -103543964 + AluSc SINE Alu 1 309 0 952 199 5 0 chr12 40242765 40242951 -103543504 - AluJb SINE Alu 0 312 126 394 310 70 41 chr12 40242952 40243123 -103543332 + MIR SINE MIR 81 256 -6 342 45 0 0 chr12 40243616 40243660 -103542795 + (CAA)n Simple_repeat Simple_repeat 2 45 0 387 284 18 59 chr12 40243811 40243980 -103542475 + MER20B DNA MER1_type 18 179 -604 245 361 49 58 chr12 40244835 40245122 -103541333 + L2 LINE L2 2866 3149 -123 2301 93 0 3 chr12 40245122 40245435 -103541020 - AluSx SINE Alu 0 312 1 245 361 49 58 chr12 40245435 40245557 -103540898 + L2 LINE L2 3149 3271 -1 2220 317 87 17 chr12 40245650 40246691 -103539764 + L2 LINE L2 1751 2864 -450 446 221 0 23 chr12 40246856 40246942 -103539513 - AluS SINE Alu -229 84 1 1973 114 17 13 chr12 40246944 40247243 -103539212 - AluSg SINE Alu -10 300 1 803 135 0 38 chr12 40247277 40247410 -103539045 - FLAM_C SINE Alu -5 128 1 1072 166 0 5 chr12 40247538 40247725 -103538730 + AluJb SINE Alu 120 305 -7 574 281 172 20 chr12 40247772 40247976 -103538479 + L2 LINE L2 2966 3138 -175 2273 57 0 3 chr12 40247976 40248300 -103538155 - AluY SINE Alu 0 324 2 574 281 172 20 chr12 40248300 40248396 -103538059 + L2 LINE L2 3138 3313 0 1635 169 51 3 chr12 40248462 40248757 -103537698 - AluJb SINE Alu -3 309 1 2162 107 7 0 chr12 40248769 40249069 -103537386 - AluSc SINE Alu -7 302 1 300 207 126 18 chr12 40249587 40249698 -103536757 - L1MD2 LINE L1 -10 6349 6227 692 142 22 2 chr12 40250041 40250274 -103536181 + AluJo SINE Alu 1 278 -34 740 242 107 5 chr12 40250291 40250506 -103535949 + MIR SINE MIR 6 242 -20 2124 79 10 30 chr12 40250828 40251133 -103535322 - AluY SINE Alu -12 299 1 2154 102 7 0 chr12 40251133 40251428 -103535027 - AluSp SINE Alu -11 302 6 1023 68 0 8 chr12 40251532 40251665 -103534790 + AluY SINE Alu 1 132 -179 2158 117 0 0 chr12 40251725 40252025 -103534430 + AluSx SINE Alu 1 300 -12 2495 62 3 0 chr12 40252457 40252766 -103533689 + AluY SINE Alu 2 311 0 858 171 30 6 chr12 40252812 40252976 -103533479 - AluJb SINE Alu 0 312 145 8178 31 3 262 chr12 40252985 40254844 -103531611 - SVA Other Other 0 1386 9 1220 116 6 0 chr12 40254889 40255062 -103531393 - AluSp SINE Alu -23 290 117 2206 113 0 0 chr12 40255287 40255589 -103530866 + AluSx SINE Alu 1 302 -10 1064 128 0 0 chr12 40255603 40255751 -103530704 - AluSq/x SINE Alu -165 148 1 1655 171 90 35 chr12 40256316 40256556 -103529899 - MLT1B LTR MaLR -3 387 121 2032 127 3 3 chr12 40256556 40256864 -103529591 - AluJb SINE Alu -4 308 1 1655 171 90 35 chr12 40256864 40256967 -103529488 - MLT1B LTR MaLR -269 121 25 378 193 0 0 chr12 40256967 40257024 -103529431 + AluJ/FLAM SINE Alu 2 58 -244 2119 110 0 10 chr12 40257151 40257452 -103529003 - AluSg SINE Alu -12 298 1 1661 188 7 3 chr12 40257455 40257753 -103528702 - AluJo SINE Alu -13 299 1 243 125 0 25 chr12 40257759 40257799 -103528656 - MLT1B LTR MaLR -350 40 2 1999 133 0 19 chr12 40260111 40260281 -103526174 - AluSx SINE Alu -10 302 139 2223 96 6 6 chr12 40260281 40260594 -103525861 - AluSq SINE Alu 0 313 1 1999 133 0 19 chr12 40260594 40260731 -103525724 - AluSx SINE Alu -173 139 1 1649 177 11 0 chr12 40260743 40261059 -103525396 - AluJb SINE Alu 0 319 1 2215 99 7 0 chr12 40261066 40261370 -103525085 - AluSx SINE Alu -6 306 1 405 250 143 45 chr12 40261824 40262048 -103524407 - MIR SINE MIR -13 249 4 1509 156 0 16 chr12 40262780 40263037 -103523418 + AluJb SINE Alu 44 296 -16 2045 119 7 0 chr12 40269892 40270185 -103516270 + AluSx SINE Alu 1 295 -17 221 262 33 0 chr12 40271964 40272025 -103514430 - MIR3 SINE MIR -31 177 115 197 375 83 17 chr12 40274166 40274286 -103512169 + L3b LINE CR1 1268 1395 -188 1630 170 54 0 chr12 40274512 40274806 -103511649 - AluJo SINE Alu 0 312 3 1985 122 14 0 chr12 40274819 40275105 -103511350 - AluSx SINE Alu -14 298 9 215 265 15 0 chr12 40277089 40277157 -103509298 + G-rich Low_complexity Low_complexity 5 73 0 24 77 0 0 chr12 40277394 40277446 -103509009 + GC_rich Low_complexity Low_complexity 1 52 0 231 226 9 57 chr12 40277641 40277819 -103508636 + GA-rich Low_complexity Low_complexity 1 169 0 219 96 58 19 chr12 40280486 40280538 -103505917 + CT-rich Low_complexity Low_complexity 3 56 0 1709 101 47 0 chr12 40282552 40282832 -103503623 - AluSx SINE Alu 0 312 22 475 120 174 22 chr12 40282932 40283024 -103503431 + AluSg/x SINE Alu 186 291 -18 334 279 234 0 chr12 40283558 40283669 -103502786 - MER91A DNA MER1_type -59 137 1 204 291 181 29 chr12 40283698 40283908 -103502547 - L3b LINE CR1 -37 1546 1305 204 245 38 19 chr12 40284199 40284252 -103502203 + L2 LINE L2 3207 3260 -12 189 0 0 0 chr12 40284518 40284539 -103501916 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 281 320 87 0 chr12 40285714 40285817 -103500638 + MIR SINE MIR 19 130 -78 22 35 0 0 chr12 40285819 40285848 -103500607 + AT_rich Low_complexity Low_complexity 1 29 0 642 125 67 0 chr12 40285848 40285952 -103500503 - HY1 scRNA scRNA -1 111 1 2199 110 0 3 chr12 40285956 40286266 -103500189 - AluSx SINE Alu -3 309 1 1734 94 38 19 chr12 40286288 40286555 -103499900 - AluSg SINE Alu 0 310 39 209 175 0 0 chr12 40286776 40286816 -103499639 + L3b LINE CR1 1540 1579 -4 1138 155 0 44 chr12 40287046 40287252 -103499203 - AluJb SINE Alu -115 197 1 2003 95 35 0 chr12 40287311 40287595 -103498860 - AluSq SINE Alu -19 294 1 459 247 42 83 chr12 40287613 40287811 -103498644 - MLT1F LTR MaLR -369 198 3 1386 123 5 0 chr12 40287863 40288075 -103498380 - AluSp SINE Alu -3 310 98 1988 130 20 3 chr12 40288098 40288391 -103498064 - AluSx SINE Alu -13 299 2 227 271 71 12 chr12 40288398 40288483 -103497972 - MIR SINE MIR -50 212 123 2180 69 10 3 chr12 40288586 40288874 -103497581 - AluY SINE Alu -21 290 1 2039 108 22 126 chr12 40288875 40289328 -103497127 - L1MC1 LINE L1 -25 6308 5903 2383 68 41 0 chr12 40289331 40289623 -103496832 - AluY SINE Alu -7 304 1 677 225 6 52 chr12 40289669 40289842 -103496613 + L2 LINE L2 3149 3313 0 2252 118 0 3 chr12 40289848 40290152 -103496303 + AluSx SINE Alu 1 303 -9 1131 147 0 0 chr12 40290778 40290935 -103495520 - FRAM SINE Alu -22 154 1 29 28 0 0 chr12 40291326 40291362 -103495093 + AT_rich Low_complexity Low_complexity 1 36 0 2183 127 3 0 chr12 40291362 40291653 -103494802 - AluSx SINE Alu -20 292 1 719 130 0 41 chr12 40291660 40291783 -103494672 - FLAM_C SINE Alu -2 141 24 2190 183 130 34 chr12 40291798 40292307 -103494148 - L1MC4 LINE L1 -12 8030 7449 2044 137 0 7 chr12 40292307 40292599 -103493856 + AluSx SINE Alu 1 290 -22 2190 183 130 34 chr12 40292599 40292713 -103493742 - L1MC4 LINE L1 -593 7449 7347 2255 115 3 0 chr12 40292718 40293013 -103493442 - AluSx SINE Alu -16 296 1 1225 154 70 98 chr12 40293176 40293287 -103493168 + AluJo SINE Alu 35 148 -164 2237 71 39 3 chr12 40293287 40293408 -103493047 + AluY SINE Alu 1 116 -195 522 0 0 0 chr12 40293408 40293466 -103492989 + (CA)n Simple_repeat Simple_repeat 2 59 0 2237 71 39 3 chr12 40293466 40293627 -103492828 + AluY SINE Alu 116 293 -18 2285 105 0 0 chr12 40293629 40293934 -103492521 + AluSq SINE Alu 1 305 -8 2490 78 0 0 chr12 40293944 40294250 -103492205 + AluSp SINE Alu 1 306 -7 1225 154 70 98 chr12 40294250 40294410 -103492045 + AluJo SINE Alu 158 312 0 230 216 27 27 chr12 40295356 40295430 -103491025 + (CCCTG)n Simple_repeat Simple_repeat 3 76 0 2205 125 0 0 chr12 40296244 40296541 -103489914 - AluSx SINE Alu -15 297 1 186 43 0 0 chr12 40296541 40296564 -103489891 + (T)n Simple_repeat Simple_repeat 1 23 0 861 137 12 7 chr12 40296613 40296775 -103489680 + L1MA8 LINE L1 5573 5733 -452 1054 165 6 17 chr12 40296778 40296975 -103489480 + FAM SINE Alu 1 60 0 2265 103 27 0 chr12 40296975 40297275 -103489180 + AluSg SINE Alu 1 308 -2 3298 118 17 47 chr12 40297282 40297491 -103488964 + L1MA8 LINE L1 5715 5929 -362 2277 107 7 0 chr12 40297491 40297780 -103488675 - AluSg SINE Alu -19 291 1 3298 118 17 47 chr12 40297780 40298163 -103488292 + L1MA8 LINE L1 5929 6289 -2 2348 91 3 3 chr12 40298216 40298524 -103487931 + AluSg SINE Alu 1 308 -2 1828 209 159 23 chr12 40298705 40299227 -103487228 + MLT1E LTR MaLR 1 593 0 275 317 30 20 chr12 40299227 40299328 -103487127 - MIR SINE MIR -70 192 91 253 292 62 35 chr12 40299332 40299476 -103486979 - LTR67 LTR ERVL -2 555 408 358 191 0 15 chr12 40300353 40300421 -103486034 + L2 LINE L2 3240 3306 -7 1384 277 60 18 chr12 40300481 40301081 -103485374 + L2 LINE L2 2520 3144 -169 2095 115 42 0 chr12 40301094 40301380 -103485075 - AluSg SINE Alu -12 298 1 1953 138 33 10 chr12 40301380 40301683 -103484772 - AluJo SINE Alu -1 311 1 951 122 38 0 chr12 40301708 40301839 -103484616 - AluJb SINE Alu -176 136 1 578 208 0 62 chr12 40301839 40301969 -103484486 + L2 LINE L2 3160 3281 -32 333 0 0 0 chr12 40302003 40302040 -103484415 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr12 40302200 40302223 -103484232 + (TGG)n Simple_repeat Simple_repeat 3 25 0 2060 113 3 0 chr12 40302284 40302592 -103483863 - AluSx SINE Alu 0 309 1 2509 53 13 7 chr12 40302652 40302955 -103483500 - AluSp SINE Alu -8 305 1 23 0 0 0 chr12 40303281 40303304 -103483151 + AT_rich Low_complexity Low_complexity 1 23 0 2070 127 20 0 chr12 40303400 40303692 -103482763 + AluSx SINE Alu 1 298 -14 1057 135 0 0 chr12 40303773 40303921 -103482534 + AluSg/x SINE Alu 147 294 -16 1532 130 0 5 chr12 40303929 40304145 -103482310 + AluSq SINE Alu 1 215 -98 2335 98 0 0 chr12 40304181 40304476 -103481979 - AluSg SINE Alu -15 295 1 2606 52 0 7 chr12 40304485 40304792 -103481663 - AluYb8 SINE Alu -13 305 1 2393 46 28 3 chr12 40304935 40305219 -103481236 - AluSc SINE Alu -18 291 1 203 196 0 43 chr12 40306304 40306350 -103480105 + G-rich Low_complexity Low_complexity 4 47 0 25 31 0 0 chr12 40309332 40309364 -103477091 + AT_rich Low_complexity Low_complexity 1 32 0 1676 100 5 0 chr12 40310045 40310265 -103476190 + AluSg SINE Alu 1 221 -89 2473 69 0 20 chr12 40311284 40311587 -103474868 + AluSp SINE Alu 1 297 -16 2208 105 10 0 chr12 40311595 40311891 -103474564 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 40311995 40312017 -103474438 + AT_rich Low_complexity Low_complexity 1 22 0 1862 152 20 17 chr12 40312104 40312406 -103474049 + AluJb SINE Alu 1 303 -9 1007 155 108 57 chr12 40312488 40312551 -103473904 - L1MD1 LINE L1 -8 6234 6176 818 83 108 17 chr12 40312551 40312671 -103473784 + FLAM_C SINE Alu 3 133 0 1007 155 108 57 chr12 40312671 40312903 -103473552 - L1MD1 LINE L1 -66 6176 5924 2630 77 0 0 chr12 40312905 40313216 -103473239 + AluSx SINE Alu 1 311 -1 2646 51 0 13 chr12 40313216 40313528 -103472927 + AluY SINE Alu 1 309 -2 1582 165 93 4 chr12 40313573 40313852 -103472603 + AluJo SINE Alu 1 304 -8 1303 158 24 0 chr12 40313945 40314109 -103472346 - AluJb SINE Alu -14 298 126 2187 94 17 14 chr12 40314109 40314406 -103472049 - AluSx SINE Alu -12 300 3 1303 158 24 0 chr12 40314406 40314450 -103472005 - AluJb SINE Alu -186 126 85 257 228 202 70 chr12 40314502 40314616 -103471839 - MIR SINE MIR -111 151 23 2101 130 0 0 chr12 40314754 40315054 -103471401 + AluSx SINE Alu 9 308 -4 2127 128 3 16 chr12 40315095 40315399 -103471056 + AluJo SINE Alu 1 300 -12 1972 120 40 0 chr12 40315480 40315756 -103470699 + AluSx SINE Alu 5 291 -21 2089 107 61 0 chr12 40315886 40316166 -103470289 - AluSg SINE Alu -13 297 1 224 307 146 36 chr12 40316728 40316920 -103469535 - L2 LINE L2 -234 3038 2826 558 322 94 28 chr12 40317021 40317384 -103469071 + LTR67 LTR ERVL 113 499 -58 919 195 12 0 chr12 40317387 40317551 -103468904 - FRAM SINE Alu 0 166 1 2245 119 0 0 chr12 40317566 40317861 -103468594 - AluSx SINE Alu -17 295 1 34 19 0 19 chr12 40317863 40317898 -103468557 + AT_rich Low_complexity Low_complexity 1 36 -15 2287 120 0 0 chr12 40317898 40318207 -103468248 - AluSg SINE Alu -1 309 1 34 19 0 19 chr12 40318207 40318223 -103468232 + AT_rich Low_complexity Low_complexity 36 51 0 24 0 0 0 chr12 40318295 40318319 -103468136 + AT_rich Low_complexity Low_complexity 1 24 0 2198 128 3 0 chr12 40318497 40318809 -103467646 + AluSq SINE Alu 1 313 0 2540 67 0 19 chr12 40319390 40319705 -103466750 + AluY SINE Alu 1 309 -2 1055 157 0 4 chr12 40320617 40320821 -103465634 + AluJb SINE Alu 2 295 -17 2549 55 0 0 chr12 40320823 40321114 -103465341 + AluY SINE Alu 1 291 -20 800 164 0 0 chr12 40321121 40321237 -103465218 + FLAM_C SINE Alu 1 116 -17 1413 143 13 31 chr12 40321237 40321454 -103465001 - AluJo SINE Alu -97 215 1 2420 87 7 3 chr12 40321570 40321880 -103464575 + AluSx SINE Alu 1 311 -1 2346 94 10 3 chr12 40322601 40322910 -103463545 + AluSq SINE Alu 1 311 -2 204 289 92 13 chr12 40323397 40323473 -103462982 - MIR SINE MIR -8 254 173 2306 122 0 0 chr12 40323477 40323788 -103462667 - AluSx SINE Alu -1 311 1 288 169 48 96 chr12 40323806 40323889 -103462566 - MIR SINE MIR -69 193 115 1851 157 39 0 chr12 40323955 40324241 -103462214 - AluJb SINE Alu -15 297 1 498 224 6 99 chr12 40325109 40325195 -103461260 - L2 LINE L2 -1349 1965 1873 180 0 0 0 chr12 40325195 40325215 -103461240 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1753 187 0 3 chr12 40325220 40325503 -103460952 - AluJo SINE Alu -30 282 1 498 224 6 99 chr12 40325503 40325571 -103460884 - L2 LINE L2 -1445 1869 1820 384 202 101 0 chr12 40325699 40325798 -103460657 + MER63 DNA MER1_type 953 1061 0 2058 101 49 0 chr12 40325890 40326176 -103460279 + AluSx SINE Alu 5 304 -8 367 353 82 5 chr12 40326177 40326361 -103460094 - MIR SINE MIR -18 244 47 1912 158 14 3 chr12 40326915 40327207 -103459248 + AluJo SINE Alu 1 295 -17 250 269 0 45 chr12 40327257 40327324 -103459131 - L2 LINE L2 -6 3266 3203 2744 42 0 0 chr12 40327572 40327880 -103458575 + AluY SINE Alu 1 308 -3 217 316 132 20 chr12 40327961 40328113 -103458342 - L2 LINE L2 -448 2866 2698 * 258 185 31 62 chr12 40328111 40328176 -103458279 + L2 LINE L2 3251 3313 0 2357 90 0 13 chr12 40328266 40328399 -103458056 + AluSc SINE Alu 2 135 -174 2486 91 0 0 chr12 40328399 40328706 -103457749 + AluSg SINE Alu 1 307 -3 2357 90 0 13 chr12 40328706 40328873 -103457582 + AluSc SINE Alu 135 298 -11 696 250 88 54 chr12 40329662 40329801 -103456654 - MIR SINE MIR -1 261 109 2322 97 0 26 chr12 40329801 40330109 -103456346 + AluSq SINE Alu 1 300 -13 696 250 88 54 chr12 40330109 40330209 -103456246 - MIR SINE MIR -153 109 14 2391 78 3 0 chr12 40330356 40330652 -103455803 + AluY SINE Alu 1 297 -14 2127 135 7 0 chr12 40331012 40331315 -103455140 + AluSx SINE Alu 1 305 -7 2497 80 0 0 chr12 40331633 40331932 -103454523 + AluSq SINE Alu 1 299 -14 1054 97 0 102 chr12 40332005 40332181 -103454274 + AluSp SINE Alu 137 294 -19 2232 113 3 0 chr12 40332218 40332520 -103453935 - AluSx SINE Alu -9 303 1 886 267 15 0 chr12 40332557 40332763 -103453692 + Tigger7 DNA MER2_type 2 210 -2277 397 202 0 83 chr12 40332782 40332891 -103453564 + Tigger7 DNA MER2_type 2388 2487 0 2183 107 7 13 chr12 40332907 40333217 -103453238 - AluSx SINE Alu -4 308 1 314 182 142 61 chr12 40333226 40333251 -103453204 - HAL1 LINE L1 -186 2321 2299 1608 172 23 43 chr12 40333251 40333554 -103452901 - AluJo SINE Alu -15 297 1 314 182 142 61 chr12 40333554 40333676 -103452779 - HAL1 LINE L1 -208 2299 2162 332 197 108 22 chr12 40333676 40333863 -103452592 + MLT1E2 LTR MaLR 4 190 -436 2439 65 3 13 chr12 40333863 40334170 -103452285 + AluY SINE Alu 1 304 -7 1716 149 41 86 chr12 40334182 40334469 -103451986 + MLT1E2 LTR MaLR 279 577 -49 1945 124 81 0 chr12 40334469 40334752 -103451703 + AluSq SINE Alu 1 306 -7 2045 127 47 7 chr12 40334759 40335059 -103451396 + AluSx SINE Alu 1 312 0 1716 149 41 86 chr12 40335059 40335125 -103451330 + MLT1E2 LTR MaLR 583 624 -2 1508 224 134 83 chr12 40335130 40335275 -103451180 - HAL1 LINE L1 -341 2166 2030 1945 134 0 33 chr12 40335275 40335582 -103450873 + AluJb SINE Alu 11 307 -5 1508 224 134 83 chr12 40335582 40336097 -103450358 - HAL1 LINE L1 -477 2030 1543 1984 152 0 3 chr12 40336097 40336394 -103450061 - AluJo SINE Alu -16 296 1 1508 224 134 83 chr12 40336394 40336541 -103449914 - HAL1 LINE L1 -964 1543 1405 2193 114 3 13 chr12 40336541 40336857 -103449598 - AluSq SINE Alu 0 313 1 1508 224 134 83 chr12 40336857 40336978 -103449477 - HAL1 LINE L1 -1102 1405 1292 1939 149 0 7 chr12 40336978 40337267 -103449188 - AluJo SINE Alu -25 287 1 1508 224 134 83 chr12 40337267 40337340 -103449115 - HAL1 LINE L1 -1215 1292 1110 1220 238 96 22 chr12 40337341 40337665 -103448790 - MLT1F1 LTR MaLR 0 567 220 1388 81 0 16 chr12 40337665 40337851 -103448604 - AluY SINE Alu 0 311 129 925 189 80 5 chr12 40337851 40338052 -103448403 - MLT1F1 LTR MaLR -351 216 1 502 282 130 32 chr12 40338111 40338458 -103447997 - HAL1 LINE L1 -1410 1097 717 2040 148 125 31 chr12 40338610 40339001 -103447454 - MSTA LTR MaLR 0 428 1 180 0 0 0 chr12 40339221 40339241 -103447214 + (ATG)n Simple_repeat Simple_repeat 1 20 0 682 229 93 26 chr12 40339322 40339632 -103446823 - L1MC4 LINE L1 -14 8028 7698 984 200 0 0 chr12 40339634 40339799 -103446656 - FRAM SINE Alu -1 165 1 1389 159 0 0 chr12 40339832 40340046 -103446409 + AluSg/x SINE Alu 86 299 -13 254 118 0 0 chr12 40340046 40340080 -103446375 - AluJo/FLAM SINE Alu -186 116 83 1679 200 71 27 chr12 40340082 40340212 -103446243 - L1MC4 LINE L1 -207 7601 7478 1947 114 82 0 chr12 40340212 40340493 -103445962 - AluSp SINE Alu -9 304 1 1679 200 71 27 chr12 40340493 40340787 -103445668 - L1MC4 LINE L1 -330 7478 7198 1873 152 24 7 chr12 40340787 40341084 -103445371 - AluJb SINE Alu -10 302 1 1679 200 71 27 chr12 40341084 40341105 -103445350 - L1MC4 LINE L1 -610 7198 7179 675 75 28 0 chr12 40341105 40341212 -103445243 + (TA)n Simple_repeat Simple_repeat 1 110 0 1679 200 71 27 chr12 40341212 40341246 -103445209 - L1MC4 LINE L1 -629 7179 7126 1842 221 60 17 chr12 40341275 40341754 -103444701 - L1MCb LINE L1 -5159 886 387 1220 219 53 50 chr12 40341750 40342111 -103444344 - L1MCb LINE L1 -6042 522 161 * 1408 170 30 75 chr12 40342118 40342360 -103444095 - MER63 DNA MER1_type -228 833 609 2047 139 3 0 chr12 40342360 40342655 -103443800 + AluSx SINE Alu 1 296 -16 1408 170 30 75 chr12 40342655 40342747 -103443708 - MER63 DNA MER1_type -452 609 514 764 192 0 0 chr12 40342747 40342872 -103443583 + FLAM_A SINE Alu 4 128 -5 253 179 0 0 chr12 40342873 40342912 -103443543 + MER4D LTR ERV1 760 798 -74 29 0 0 0 chr12 40342912 40342941 -103443514 + AT_rich Low_complexity Low_complexity 1 29 0 2208 110 10 0 chr12 40342950 40343249 -103443206 + AluSp SINE Alu 1 302 -11 2051 114 74 40 chr12 40343585 40343937 -103442518 + THE1B LTR MaLR 1 364 0 11625 86 21 3 chr12 40343937 40345489 -103440966 + THE1B-int LTR MaLR 1 1580 0 2497 101 5 37 chr12 40345489 40345865 -103440590 + THE1B LTR MaLR 1 364 0 185 316 95 21 chr12 40345981 40346076 -103440379 + MIR SINE MIR 53 154 -108 327 253 163 24 chr12 40346538 40346704 -103439751 - MIR SINE MIR -16 246 58 2511 73 0 0 chr12 40346709 40347011 -103439444 - AluSx SINE Alu -9 303 2 231 250 87 0 chr12 40347140 40347232 -103439223 + MIR SINE MIR 160 259 -3 270 250 0 0 chr12 40347312 40347376 -103439079 - L1ME LINE L1 -590 5574 5511 2371 55 7 26 chr12 40347468 40347776 -103438679 - AluSg SINE Alu -8 302 1 2347 78 0 13 chr12 40349158 40349467 -103436988 + AluSq SINE Alu 1 305 -8 1841 141 0 0 chr12 40349808 40350078 -103436377 + AluSx SINE Alu 1 270 -42 240 278 0 83 chr12 40350152 40350260 -103436195 - L2 LINE L2 -1 3271 3173 1636 166 6 64 chr12 40350713 40351027 -103435428 + AluJb SINE Alu 1 296 -16 1364 211 14 11 chr12 40351138 40351417 -103435038 - AluJo SINE Alu -31 281 2 9362 186 11 28 chr12 40351822 40353238 -103433217 - L1PA13 LINE L1 -145 7456 6016 2356 107 0 0 chr12 40353238 40353537 -103432918 - AluSx SINE Alu -11 301 3 9362 186 11 28 chr12 40353537 40356109 -103430346 - L1PA13 LINE L1 -1585 6016 2234 2667 32 0 19 chr12 40356127 40356440 -103430015 - AluY SINE Alu -4 307 1 234 325 0 0 chr12 40356715 40356798 -103429657 - L1PA13 LINE L1 -5399 2182 2100 1040 343 55 18 chr12 40356944 40357507 -103428948 - L1PA13 LINE L1 -6203 1371 788 320 211 70 32 chr12 40357536 40357721 -103428734 - L1M4 LINE L1 -2978 3168 2977 1813 219 27 75 chr12 40358016 40358566 -103427889 - LTR8 LTR ERV1 -31 660 138 305 116 23 0 chr12 40358566 40358609 -103427846 + AluJb SINE Alu 1 44 -257 2237 106 10 0 chr12 40358678 40358971 -103427484 - AluSx SINE Alu -16 296 1 1464 177 0 4 chr12 40359090 40359327 -103427128 + AluJb SINE Alu 47 282 -30 656 156 57 16 chr12 40359414 40359536 -103426919 - LTR8 LTR ERV1 -564 127 1 353 232 72 0 chr12 40359750 40359875 -103426580 - L1M4 LINE L1 -3456 2690 2557 1408 178 29 16 chr12 40359884 40360198 -103426257 - L1M4 LINE L1 -3034 3112 2795 713 258 26 73 chr12 40360471 40360801 -103425654 - LTR16A LTR ERVL 0 450 56 2137 140 19 35 chr12 40360990 40361180 -103425275 + MER65A LTR ERV1 80 263 -182 1954 141 3 10 chr12 40361180 40361479 -103424976 - AluSx SINE Alu -15 297 1 2137 140 19 35 chr12 40361479 40361660 -103424795 + MER65A LTR ERV1 263 445 0 2470 64 0 3 chr12 40361881 40362176 -103424279 + AluY SINE Alu 1 294 -17 2240 123 0 7 chr12 40362190 40362492 -103423963 + AluSx SINE Alu 1 300 -12 428 333 26 0 chr12 40362697 40362853 -103423602 - ERVL LTR ERVL -859 4905 4746 1363 271 18 12 chr12 40362953 40363282 -103423173 - LTR16A LTR ERVL 0 450 120 1622 189 31 14 chr12 40363334 40363620 -103422835 - AluJo SINE Alu -19 293 3 316 330 0 9 chr12 40363722 40363834 -103422621 - L1MEd LINE L1 -5552 567 457 485 360 43 5 chr12 40363934 40364328 -103422127 + L1M4 LINE L1 4182 4590 -1556 21 0 0 0 chr12 40364384 40364405 -103422050 + AT_rich Low_complexity Low_complexity 1 21 0 298 216 112 43 chr12 40364423 40364539 -103421916 + L1MC4 LINE L1 7901 8024 -18 1923 119 59 0 chr12 40364543 40364829 -103421626 - AluSx SINE Alu -9 303 1 16557 26 1 1 chr12 40365122 40367805 -103418650 - L1PA3 LINE L1 -3 6152 3470 10672 31 1 2 chr12 40367805 40369093 -103417362 + L1PA3 LINE L1 2191 3477 -2669 652 133 0 0 chr12 40369102 40369207 -103417248 - L1MA1 LINE L1 0 6302 6198 37 69 0 0 chr12 40369351 40369423 -103417032 + AT_rich Low_complexity Low_complexity 1 72 0 1744 143 38 4 chr12 40369952 40370217 -103416238 - AluJo SINE Alu -30 282 9 2115 151 0 0 chr12 40370413 40370724 -103415731 - AluSx SINE Alu -1 311 1 31 58 0 0 chr12 40370729 40370781 -103415674 + AT_rich Low_complexity Low_complexity 1 52 0 2148 115 7 20 chr12 40371918 40372223 -103414232 + AluSx SINE Alu 7 307 -5 2082 125 20 13 chr12 40372604 40372909 -103413546 - AluJb SINE Alu -5 307 1 183 100 0 0 chr12 40373862 40373892 -103412563 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2282 98 3 7 chr12 40373892 40374178 -103412277 - AluSq SINE Alu -26 287 1 1970 144 50 0 chr12 40376155 40376453 -103410002 + AluSq SINE Alu 1 313 0 542 275 6 12 chr12 40377012 40377179 -103409276 + MIR3 SINE MIR 37 202 -6 1892 111 70 0 chr12 40377740 40378010 -103408445 - AluSq SINE Alu -24 289 1 687 131 33 0 chr12 40378186 40378308 -103408147 - L1MA9 LINE L1 -28 6284 6159 2295 107 0 0 chr12 40378727 40379025 -103407430 - AluSx SINE Alu -14 298 1 2219 114 7 3 chr12 40379027 40379326 -103407129 - AluSq SINE Alu -13 300 1 197 318 30 0 chr12 40379387 40379453 -103407002 - L2 LINE L2 -5 3267 3200 1014 191 0 0 chr12 40379639 40379812 -103406643 - FAM SINE Alu -2 173 1 2122 96 65 7 chr12 40379869 40380161 -103406294 - AluSc SINE Alu 0 309 1 253 223 50 6 chr12 40381688 40381779 -103404676 - MIR SINE MIR -61 147 99 203 59 0 29 chr12 40381809 40381843 -103404612 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2052 141 7 0 chr12 40382494 40382791 -103403664 - AluSx SINE Alu -13 299 1 232 232 0 110 chr12 40382811 40382893 -103403562 - MIR SINE MIR -119 89 17 1242 169 99 29 chr12 40384314 40384586 -103401869 - AluJb SINE Alu -9 303 13 4349 124 3 17 chr12 40386482 40387135 -103399320 + LTR9B LTR ERV1 1 644 0 2450 209 17 35 chr12 40387135 40387653 -103398802 + HUERS-P3b LTR ERV1 1 509 -6909 10814 119 18 14 chr12 40387696 40389278 -103397177 + HUERS-P3b LTR ERV1 764 2351 -5067 1349 133 67 0 chr12 40389278 40389488 -103396967 + L1P LINE L1 2 225 -5921 418 216 57 0 chr12 40389598 40389686 -103396769 - MER33 DNA MER1_type -230 94 2 2320 86 0 0 chr12 40389866 40390157 -103396298 + AluSx SINE Alu 1 291 -21 2525 77 6 0 chr12 40390157 40390468 -103395987 + AluSp SINE Alu 1 313 0 1389 94 0 0 chr12 40390665 40390845 -103395610 + AluSg/x SINE Alu 129 312 0 2539 71 0 0 chr12 40391715 40392025 -103394430 - AluY SINE Alu -1 310 1 2441 64 7 0 chr12 40393092 40393387 -103393068 - AluSp SINE Alu -16 297 1 313 296 154 19 chr12 40393492 40393654 -103392801 + MER5A DNA MER1_type 2 185 -4 372 292 117 0 chr12 40393705 40393825 -103392630 + L2 LINE L2 3180 3313 0 21 0 0 0 chr12 40393927 40393948 -103392507 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr12 40394177 40394208 -103392247 + (TA)n Simple_repeat Simple_repeat 1 31 0 2213 91 3 20 chr12 40394209 40394505 -103391950 - AluY SINE Alu 0 311 21 216 0 0 0 chr12 40394505 40394529 -103391926 + (TA)n Simple_repeat Simple_repeat 2 25 0 1918 116 11 7 chr12 40394529 40394806 -103391649 - AluSg SINE Alu -18 292 15 1669 193 0 17 chr12 40394842 40395132 -103391323 - AluJo SINE Alu -22 290 6 1782 245 35 18 chr12 40395148 40395460 -103390995 + L1M4 LINE L1 2877 3182 -2964 1664 159 35 4 chr12 40395460 40395717 -103390738 - AluJb SINE Alu -27 285 21 1782 245 35 18 chr12 40395717 40396012 -103390443 + L1M4 LINE L1 3182 3494 -2652 1340 260 28 23 chr12 40396011 40396400 -103390055 + L1PA12 LINE L1 654 1044 -6537 * 2111 131 0 0 chr12 40396401 40396698 -103389757 - AluSg SINE Alu -13 297 1 2076 104 3 17 chr12 40396717 40397016 -103389439 - AluSg SINE Alu -15 295 1 870 133 0 16 chr12 40397169 40397297 -103389158 - FLAM_C SINE Alu -6 127 2 732 305 63 43 chr12 40397581 40397606 -103388849 - L1ME4a LINE L1 -3 6118 6095 2179 112 10 13 chr12 40397606 40397910 -103388545 + AluSx SINE Alu 1 303 -9 732 305 63 43 chr12 40397910 40398507 -103387948 - L1ME4a LINE L1 -26 6095 5484 296 127 91 0 chr12 40398532 40398587 -103387868 - AluS SINE Alu -8 292 233 1241 159 128 35 chr12 40398717 40398974 -103387481 - AluJo SINE Alu -31 281 1 254 272 12 0 chr12 40399078 40399159 -103387296 - L1ME4a LINE L1 -107 6014 5933 2341 99 0 0 chr12 40399231 40399533 -103386922 - AluSx SINE Alu -10 302 1 31 44 0 0 chr12 40399543 40399588 -103386867 + AT_rich Low_complexity Low_complexity 1 45 0 574 167 12 0 chr12 40399589 40399673 -103386782 - FLAM_C SINE Alu -26 117 33 1735 112 52 75 chr12 40399716 40400021 -103386434 - AluSx SINE Alu -14 298 1 27 0 0 0 chr12 40400100 40400127 -103386328 + AT_rich Low_complexity Low_complexity 1 27 0 1604 168 40 16 chr12 40400218 40400522 -103385933 + AluJo SINE Alu 1 311 -1 795 139 8 33 chr12 40400752 40400874 -103385581 - FLAM_C SINE Alu -23 120 2 21 36 0 0 chr12 40400875 40400903 -103385552 + AT_rich Low_complexity Low_complexity 1 28 0 1349 167 30 0 chr12 40401337 40401570 -103384885 - L1MB7 LINE L1 -19 6165 5926 841 156 0 57 chr12 40402222 40402363 -103384092 + AluJo/FLAM SINE Alu 1 133 -169 1459 181 50 11 chr12 40402366 40402493 -103383962 + AluJb SINE Alu 1 122 -190 207 0 0 0 chr12 40402493 40402516 -103383939 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1459 181 50 11 chr12 40402516 40402669 -103383786 + AluJb SINE Alu 122 292 -20 3282 118 2 45 chr12 40402767 40402980 -103383475 - MER1A DNA MER1_type -2173 529 308 2287 90 0 3 chr12 40402980 40403269 -103383186 - AluSc SINE Alu -21 288 1 3282 118 2 45 chr12 40403269 40403570 -103382885 - MER1A DNA MER1_type -2394 308 37 1895 124 38 3 chr12 40403854 40404144 -103382311 - AluJb SINE Alu -12 300 1 2219 107 3 10 chr12 40404198 40404506 -103381949 - AluSp SINE Alu -7 306 1 389 167 0 0 chr12 40404509 40404569 -103381886 - Alu SINE Alu -8 293 234 800 65 0 0 chr12 40404571 40404664 -103381791 - AluSc SINE Alu -215 94 2 769 55 0 0 chr12 40404666 40404757 -103381698 - MER1A DNA MER1_type -196 333 243 1039 212 5 10 chr12 40404757 40404960 -103381495 - AluJb SINE Alu -110 202 1 1443 97 11 126 chr12 40404963 40405232 -103381223 - AluSg1 SINE Alu -12 297 60 243 0 0 0 chr12 40405919 40405946 -103380509 + (T)n Simple_repeat Simple_repeat 1 27 0 2208 113 3 3 chr12 40407061 40407386 -103379069 + AluSx SINE Alu 1 312 0 215 204 0 0 chr12 40409782 40409826 -103376629 + (TG)n Simple_repeat Simple_repeat 2 45 0 2337 93 0 7 chr12 40413771 40414072 -103372383 - AluSx SINE Alu -13 299 1 1441 168 29 15 chr12 40414878 40415152 -103371303 + AluJo SINE Alu 29 306 -6 2343 228 149 84 chr12 40415152 40415269 -103371186 - L2 LINE L2 -35 3278 3170 1511 157 61 14 chr12 40415269 40415549 -103370906 - AluJo SINE Alu -19 293 1 2343 228 149 84 chr12 40415549 40416149 -103370306 - L2 LINE L2 -143 3170 2610 2342 97 3 0 chr12 40416149 40416447 -103370008 - AluSq SINE Alu -14 299 1 2343 228 149 84 chr12 40416447 40416997 -103369458 - L2 LINE L2 -703 2610 1893 2157 112 14 0 chr12 40416997 40417293 -103369162 - AluSx SINE Alu -12 300 1 359 72 10 3 chr12 40417422 40417484 -103368971 + Alu SINE Alu 247 295 -5 2106 99 0 38 chr12 40417573 40417887 -103368568 + AluSg SINE Alu 1 302 -8 337 144 367 0 chr12 40418248 40418338 -103368117 + L2 LINE L2 3191 3313 0 25 0 0 0 chr12 40418393 40418418 -103368037 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr12 40418431 40418472 -103367983 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 729 191 0 0 chr12 40418472 40418587 -103367868 - AluJb SINE Alu -196 116 2 221 282 28 14 chr12 40418887 40418958 -103367497 - MIR SINE MIR -116 92 21 437 243 184 38 chr12 40418984 40419169 -103367286 + MIR SINE MIR 41 252 -10 2475 68 3 0 chr12 40419275 40419583 -103366872 - AluSp SINE Alu -4 309 1 218 259 37 0 chr12 40420971 40421025 -103365430 + MIR SINE MIR 92 147 -61 968 96 0 22 chr12 40421049 40421185 -103365270 - FLAM_C SINE Alu 0 133 1 1631 107 29 36 chr12 40421217 40421498 -103364957 - AluSx SINE Alu -33 279 1 841 158 0 0 chr12 40421700 40421833 -103364622 + AluJo/FLAM SINE Alu 1 133 -179 1466 184 26 15 chr12 40421836 40422108 -103364347 + AluJo SINE Alu 2 276 -36 349 189 14 7 chr12 40422108 40422177 -103364278 - AluJ/FLAM SINE Alu -240 62 1 22 23 0 45 chr12 40423563 40423589 -103362866 + AT_rich Low_complexity Low_complexity 1 26 -16 775 112 60 8 chr12 40423589 40423723 -103362732 - L1MA6 LINE L1 -2 6298 6158 22 23 0 45 chr12 40423723 40423740 -103362715 + AT_rich Low_complexity Low_complexity 26 42 0 418 159 0 0 chr12 40424139 40424202 -103362253 - 5S rRNA rRNA -55 66 4 2347 93 0 16 chr12 40424381 40424692 -103361763 - AluSg SINE Alu -4 306 1 21 0 0 0 chr12 40425068 40425089 -103361366 + AT_rich Low_complexity Low_complexity 1 21 0 1737 149 25 51 chr12 40425485 40425522 -103360933 + AluJo SINE Alu 1 37 -275 2186 100 10 0 chr12 40425522 40425811 -103360644 - AluSq SINE Alu -19 294 3 1737 149 25 51 chr12 40425811 40426088 -103360367 + AluJo SINE Alu 37 307 -5 24 32 0 0 chr12 40426598 40426629 -103359826 + AT_rich Low_complexity Low_complexity 1 31 0 1936 120 7 37 chr12 40426778 40427078 -103359377 - AluSx SINE Alu -21 291 1 282 93 13 40 chr12 40427154 40427229 -103359226 + (TTTTA)n Simple_repeat Simple_repeat 3 75 0 1880 118 0 7 chr12 40427235 40427505 -103358950 - AluSx SINE Alu -1 311 44 1399 254 88 55 chr12 40427716 40427951 -103358504 + L1ME3A LINE L1 4802 5028 -1142 1678 201 0 0 chr12 40427951 40428250 -103358205 + AluJb SINE Alu 1 299 -13 1399 254 88 55 chr12 40428250 40428270 -103358185 + L1ME3A LINE L1 5028 5046 -1124 1926 115 0 0 chr12 40428270 40428530 -103357925 + AluSg SINE Alu 37 296 -14 2023 134 3 3 chr12 40428532 40428822 -103357633 + AluSg SINE Alu 1 290 -20 1399 254 88 55 chr12 40428822 40429702 -103356753 + L1ME3A LINE L1 5046 5963 -207 6200 216 93 91 chr12 40429826 40432523 -103353932 + LTR10B-int LTR ERV1 1 2707 -3963 10083 221 7 11 chr12 40432535 40434527 -103351928 + LTR10B-int LTR ERV1 4666 6648 -1 2072 213 23 21 chr12 40434528 40434986 -103351469 + LTR10B LTR ERV1 1 547 0 2472 137 10 59 chr12 40435871 40436092 -103350363 - L1PA12 LINE L1 -9 6155 5925 541 105 53 11 chr12 40436092 40436187 -103350268 - L1PA13 LINE L1 0 6163 6065 2472 137 10 59 chr12 40436187 40436289 -103350166 - L1PA12 LINE L1 -239 5925 5820 3397 77 0 58 chr12 40436289 40436758 -103349697 + MLT2A1 LTR ERVL 1 442 -2 2472 137 10 59 chr12 40436758 40436978 -103349477 - L1PA12 LINE L1 -344 5820 5662 1352 139 5 0 chr12 40436978 40437180 -103349275 + AluSx SINE Alu 1 203 -109 511 92 0 0 chr12 40437180 40437245 -103349210 + AluSg/x SINE Alu 67 131 -179 1370 175 0 0 chr12 40437248 40437459 -103348996 - AluJb SINE Alu -101 211 1 226 263 0 0 chr12 40437864 40437921 -103348534 + L1ME LINE L1 5511 5567 -599 251 241 96 0 chr12 40438014 40438097 -103348358 - MIR SINE MIR -12 250 160 1276 113 25 117 chr12 40438208 40438491 -103347964 - L1MCa LINE L1 -5303 1123 867 2063 97 3 30 chr12 40438492 40438792 -103347663 - AluY SINE Alu -18 293 2 12189 185 18 49 chr12 40438793 40439080 -103347375 + L1P4 LINE L1 678 972 -5174 215 61 30 0 chr12 40439080 40439113 -103347342 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 12189 185 18 49 chr12 40439113 40439434 -103347021 + L1P4 LINE L1 972 1301 -4845 1715 164 10 7 chr12 40439434 40439727 -103346728 + AluSg SINE Alu 1 294 -16 12189 185 18 49 chr12 40439727 40441912 -103344543 + L1P4 LINE L1 1301 3387 -2759 2038 129 3 0 chr12 40441923 40442218 -103344237 + AluSq SINE Alu 12 307 -6 1374 138 0 0 chr12 40442252 40442448 -103344007 + AluJb SINE Alu 90 285 -27 223 37 0 0 chr12 40442448 40442475 -103343980 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 11929 135 17 23 chr12 40442480 40444404 -103342051 + L1P4 LINE L1 3380 5275 -899 185 0 40 0 chr12 40444404 40444429 -103342026 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11929 135 17 23 chr12 40444429 40444893 -103341562 + L1P4 LINE L1 5275 5740 -434 2841 114 35 7 chr12 40445067 40445523 -103340932 + L1PA11 LINE L1 5703 6171 -3 1311 259 57 6 chr12 40445541 40446013 -103340442 + L1M4 LINE L1 3475 3970 -2176 * 1677 216 70 24 chr12 40446012 40446281 -103340174 + L1M4 LINE L1 4200 4455 -1691 1966 126 14 0 chr12 40446281 40446575 -103339880 + L1PA16 LINE L1 5867 6164 -2 1677 216 70 24 chr12 40446575 40446837 -103339618 + L1M4 LINE L1 4455 4755 -1391 2436 124 89 2 chr12 40446837 40447231 -103339224 + MSTA LTR MaLR 1 428 0 9821 157 30 7 chr12 40447231 40448844 -103337611 + MSTA-int LTR MaLR 1 1651 0 856 100 46 8 chr12 40448846 40448976 -103337479 + MSTA LTR MaLR 3 137 -291 2132 110 10 3 chr12 40449232 40449523 -103336932 + AluSx SINE Alu 1 293 -19 1737 159 24 17 chr12 40449566 40449856 -103336599 + AluJb SINE Alu 2 293 -19 549 110 0 0 chr12 40449856 40449938 -103336517 + (TA)n Simple_repeat Simple_repeat 2 83 0 4791 118 142 35 chr12 40450549 40450987 -103335468 - Tigger3b DNA MER2_type -1797 1231 841 2129 122 0 28 chr12 40450987 40451308 -103335147 - AluSx SINE Alu 0 312 1 1716 158 21 24 chr12 40451315 40451606 -103334849 - AluJo SINE Alu -22 290 1 4791 118 142 35 chr12 40451606 40452075 -103334380 - Tigger3b DNA MER2_type -2192 836 202 2261 98 3 7 chr12 40452075 40452372 -103334083 - AluSc SINE Alu -13 296 1 4791 118 142 35 chr12 40452372 40452432 -103334023 - Tigger3b DNA MER2_type -2826 202 150 285 128 0 0 chr12 40452881 40452928 -103333527 + Alu SINE Alu 249 295 -6 432 244 0 0 chr12 40452932 40453018 -103333437 - Tigger3b DNA MER2_type -1144 87 2 1948 108 26 39 chr12 40453382 40453687 -103332768 - AluSg SINE Alu -6 304 4 1663 101 5 0 chr12 40453743 40453960 -103332495 - AluSp SINE Alu -23 290 73 413 244 85 18 chr12 40454007 40454171 -103332284 + MIR3 SINE MIR 19 193 -15 1954 103 45 58 chr12 40455241 40455551 -103330904 - AluSx SINE Alu -6 306 1 1394 169 9 115 chr12 40455555 40455751 -103330704 - AluJo SINE Alu 0 302 155 2284 104 0 0 chr12 40455751 40456039 -103330416 - AluSx SINE Alu -24 288 1 1394 169 9 115 chr12 40456039 40456180 -103330275 - AluJo SINE Alu -147 155 1 1826 163 10 10 chr12 40456218 40456519 -103329936 - AluJb SINE Alu -11 301 1 2132 126 0 3 chr12 40456865 40457167 -103329288 - AluSg SINE Alu -9 301 1 23 33 0 0 chr12 40457244 40457274 -103329181 + AT_rich Low_complexity Low_complexity 1 30 0 921 194 81 28 chr12 40457359 40457570 -103328885 + AluJo SINE Alu 86 307 -5 2297 99 0 10 chr12 40457571 40457873 -103328582 + AluSg1 SINE Alu 4 302 -7 245 128 0 26 chr12 40457882 40457921 -103328534 - Alu SINE Alu -262 38 1 488 255 85 20 chr12 40457927 40458080 -103328375 - Charlie8 DNA MER1_type -2254 163 1 277 278 28 0 chr12 40458157 40458229 -103328226 + L2 LINE L2 3222 3295 -18 316 231 105 83 chr12 40458393 40458635 -103327820 - L1M4 LINE L1 -904 5242 4992 1593 131 30 8 chr12 40458635 40458872 -103327583 - AluSx SINE Alu -28 284 43 316 231 105 83 chr12 40458872 40458906 -103327549 - L1M4 LINE L1 -1154 4992 4960 2299 87 0 26 chr12 40458936 40459248 -103327207 - AluY SINE Alu -7 304 1 457 199 7 27 chr12 40459349 40459495 -103326960 + CT-rich Low_complexity Low_complexity 3 145 0 1873 122 56 4 chr12 40459495 40459785 -103326670 - AluSx SINE Alu 0 304 1 1920 139 27 17 chr12 40459807 40459969 -103326486 - AluSx SINE Alu -8 304 145 2225 106 3 3 chr12 40459969 40460271 -103326184 - AluSp SINE Alu -11 302 1 2265 89 33 3 chr12 40460273 40460577 -103325878 - AluSq SINE Alu 0 313 1 1920 139 27 17 chr12 40460577 40460712 -103325743 - AluSx SINE Alu -167 145 1 1482 163 80 28 chr12 40460832 40461121 -103325334 - AluJb SINE Alu -8 304 1 863 103 7 97 chr12 40461123 40461268 -103325187 - AluJb SINE Alu -178 134 3 2346 92 3 6 chr12 40461321 40461635 -103324820 - AluSp SINE Alu 0 313 1 1096 60 33 13 chr12 40461700 40461850 -103324605 - AluSp SINE Alu -160 153 1 23 0 0 0 chr12 40462176 40462199 -103324256 + AT_rich Low_complexity Low_complexity 1 23 0 547 161 42 8 chr12 40462301 40462419 -103324036 + AluSq/x SINE Alu 7 128 -184 1474 92 14 28 chr12 40462553 40462771 -103323684 + AluY SINE Alu 82 296 -15 2363 93 10 0 chr12 40462836 40463137 -103323318 + AluSx SINE Alu 1 304 -8 1887 189 78 27 chr12 40463174 40463587 -103322868 - Tigger2a DNA MER2_type 0 434 1 32 81 0 0 chr12 40463603 40463677 -103322778 + AT_rich Low_complexity Low_complexity 1 74 0 296 284 11 11 chr12 40463698 40463793 -103322662 + L1ME4a LINE L1 5493 5587 -591 256 241 161 22 chr12 40464064 40464201 -103322254 + L1ME4a LINE L1 5965 6120 -1 21 0 0 0 chr12 40464258 40464279 -103322176 + AT_rich Low_complexity Low_complexity 1 21 0 2213 107 0 0 chr12 40464646 40464935 -103321520 + AluSx SINE Alu 1 289 -23 828 209 141 0 chr12 40465127 40465318 -103321137 + MER20 DNA MER1_type 2 219 0 25 65 0 0 chr12 40465385 40465431 -103321024 + AT_rich Low_complexity Low_complexity 1 46 0 2400 174 27 10 chr12 40466889 40467378 -103319077 - L1MB7 LINE L1 -15 6169 5673 1767 139 3 76 chr12 40467418 40467735 -103318720 - AluJo SINE Alu -18 294 1 1890 164 0 0 chr12 40467748 40468040 -103318415 - AluSx SINE Alu -19 293 2 2111 137 0 6 chr12 40468267 40468580 -103317875 - AluSx SINE Alu -1 311 1 2064 117 7 0 chr12 40468819 40469100 -103317355 - AluSx SINE Alu -25 287 5 2193 133 0 0 chr12 40469799 40470093 -103316362 + AluSx SINE Alu 1 294 -18 1455 171 0 81 chr12 40470262 40470583 -103315872 + AluJo SINE Alu 1 295 -17 2015 147 28 3 chr12 40470740 40471067 -103315388 + MER7A DNA MER2_type 2 334 -12 5587 106 35 42 chr12 40471333 40472869 -103313586 - SVA Other Other -518 1004 1 498 108 0 0 chr12 40472869 40472943 -103313512 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 212 298 11 21 chr12 40473229 40473323 -103313132 + GA-rich Low_complexity Low_complexity 3 95 0 578 311 67 59 chr12 40473769 40474412 -103312043 + L2 LINE L2 2549 3236 -36 273 231 15 0 chr12 40474875 40474940 -103311515 - MIR SINE MIR -108 154 89 * 276 286 38 53 chr12 40474936 40475029 -103311426 - MIR3 SINE MIR -31 177 85 1829 159 55 104 chr12 40475029 40475520 -103310935 - MLT1C LTR MaLR 0 467 1 276 286 38 53 chr12 40475520 40475559 -103310896 - MIR3 SINE MIR -123 85 47 726 201 7 0 chr12 40475743 40475897 -103310558 - L1MA10 LINE L1 -2 6332 6178 416 244 69 8 chr12 40475898 40476029 -103310426 - L1ME3 LINE L1 -138 6024 5886 773 203 14 88 chr12 40476030 40476084 -103310371 - MLT1A1 LTR MaLR -1 364 308 2228 103 0 3 chr12 40476084 40476376 -103310079 - AluSg SINE Alu -19 291 1 773 203 14 88 chr12 40476376 40476538 -103309917 - MLT1A1 LTR MaLR -57 308 164 944 182 5 42 chr12 40476554 40476746 -103309709 - MLT1A1 LTR MaLR -171 194 10 670 150 41 34 chr12 40476747 40476894 -103309561 - L1ME LINE L1 -688 5478 5331 2608 69 0 0 chr12 40477034 40477340 -103309115 - AluY SINE Alu -4 307 2 396 284 97 22 chr12 40477851 40478075 -103308380 - L1ME LINE L1 -1232 4914 4672 2463 88 0 0 chr12 40478083 40478389 -103308066 - AluSg SINE Alu -4 306 1 1993 121 43 0 chr12 40478390 40478671 -103307784 - AluSx SINE Alu -19 293 1 2241 125 6 3 chr12 40478784 40479096 -103307359 - AluSq SINE Alu 0 313 1 332 205 48 43 chr12 40479493 40479606 -103306849 - MLT1G1 LTR MaLR -1 580 441 309 221 21 21 chr12 40479769 40479880 -103306575 - MLT1I LTR MaLR -266 143 64 2306 121 0 0 chr12 40479937 40480242 -103306213 - AluSx SINE Alu -7 305 1 285 167 0 0 chr12 40480505 40480559 -103305896 + (CAG)n Simple_repeat Simple_repeat 1 54 0 2158 117 0 7 chr12 40480810 40481126 -103305329 + AluSx SINE Alu 1 314 0 285 279 81 9 chr12 40481141 40481252 -103305203 + MLT1J LTR MaLR 325 443 -68 2388 89 3 13 chr12 40483172 40483488 -103302967 + AluSq SINE Alu 1 313 0 49 43 0 0 chr12 40483607 40483677 -103302778 + AT_rich Low_complexity Low_complexity 1 70 0 4071 205 43 88 chr12 40484142 40485237 -103301218 - HERVL LTR ERVL -3958 1696 669 1560 148 104 32 chr12 40486613 40486891 -103299564 - AluJo SINE Alu -14 298 1 2390 86 0 10 chr12 40488417 40488721 -103297734 + AluSg SINE Alu 1 301 -9 800 331 51 14 chr12 40488742 40489113 -103297342 + L3 LINE CR1 544 928 -649 2180 119 0 0 chr12 40489120 40489423 -103297032 - AluY SINE Alu -8 303 1 354 289 52 15 chr12 40489438 40489573 -103296882 + L3 LINE CR1 1156 1295 -282 1606 164 0 36 chr12 40490367 40490641 -103295814 + AluJb SINE Alu 1 264 -48 1391 109 49 63 chr12 40490823 40491162 -103295293 + LTR12 LTR ERV1 55 257 -457 407 203 25 25 chr12 40491162 40491284 -103295171 + LTR30 LTR ERV1 544 716 -78 1651 113 36 2 chr12 40491284 40491526 -103294929 + LTR12 LTR ERV1 366 714 0 23 0 0 0 chr12 40492403 40492426 -103294029 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 40492606 40492635 -103293820 + AT_rich Low_complexity Low_complexity 1 29 0 5585 151 26 14 chr12 40492641 40493612 -103292843 - L1MA7 LINE L1 -3 6288 5307 2212 118 0 0 chr12 40493837 40494133 -103292322 + AluSg SINE Alu 1 296 -14 887 302 179 20 chr12 40494154 40494753 -103291702 + L1MEc LINE L1 39 772 -5624 1922 69 34 15 chr12 40494753 40495015 -103291440 + AluSg SINE Alu 44 310 0 887 302 179 20 chr12 40495015 40495130 -103291325 + L1MEc LINE L1 772 867 -5529 705 294 90 12 chr12 40495137 40495392 -103291063 + L1M3d LINE L1 5 279 -5612 760 248 12 40 chr12 40495679 40495929 -103290526 - L1MA9 LINE L1 -109 6203 5961 180 0 0 0 chr12 40496025 40496045 -103290410 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1440 255 91 10 chr12 40496045 40496531 -103289924 + L1M3d LINE L1 2142 2666 -3304 2007 90 0 131 chr12 40496561 40496896 -103289559 - AluSc SINE Alu -18 291 1 180 0 0 0 chr12 40497366 40497386 -103289069 + (T)n Simple_repeat Simple_repeat 1 20 0 2375 84 3 7 chr12 40497425 40497733 -103288722 + AluSc SINE Alu 1 307 -2 264 100 20 0 chr12 40498018 40498068 -103288387 - L1MB3 LINE L1 0 6183 6133 719 195 0 0 chr12 40498100 40498218 -103288237 - FLAM_C SINE Alu -15 118 1 880 219 5 5 chr12 40498219 40498411 -103288044 - L1MB4 LINE L1 -50 6130 5939 1906 140 0 0 chr12 40498414 40498693 -103287762 - AluJb SINE Alu -16 296 18 21 0 0 0 chr12 40498800 40498821 -103287634 + AT_rich Low_complexity Low_complexity 1 21 0 828 151 0 0 chr12 40500866 40500985 -103285470 + AluJb SINE Alu 2 120 -192 37 0 0 0 chr12 40500985 40501022 -103285433 + AT_rich Low_complexity Low_complexity 1 37 0 2285 119 0 0 chr12 40501456 40501758 -103284697 - AluSx SINE Alu -10 302 1 691 241 60 0 chr12 40501802 40501968 -103284487 - FRAM SINE Alu -3 173 1 486 262 222 12 chr12 40502264 40502512 -103283943 - LTR16B LTR ERVL -157 307 8 389 301 55 6 chr12 40502568 40502731 -103283724 - HERV16 LTR ERVL -94 4902 4732 936 211 81 46 chr12 40502834 40503150 -103283305 + MLT1E2 LTR MaLR 6 365 -259 242 266 174 0 chr12 40503200 40503309 -103283146 + L2 LINE L2 2579 2706 -608 479 242 128 31 chr12 40503522 40503749 -103282706 + MIR SINE MIR 14 262 0 935 234 33 0 chr12 40503799 40503983 -103282472 - Charlie1 DNA MER1_type -1437 1324 1135 1051 120 0 0 chr12 40504117 40504267 -103282188 - AluSc SINE Alu 0 309 160 505 224 75 78 chr12 40504288 40504404 -103282051 - L1MB4 LINE L1 -354 5808 5693 1612 171 13 70 chr12 40504404 40504720 -103281735 + AluJo SINE Alu 1 298 -14 505 224 75 78 chr12 40504720 40504858 -103281597 - L1MB4 LINE L1 -469 5693 5555 630 211 0 23 chr12 40504859 40504992 -103281463 - FLAM_A SINE Alu -3 130 1 309 321 14 29 chr12 40505103 40505243 -103281212 - L1MB4 LINE L1 -1312 4834 4697 1251 223 249 34 chr12 40505278 40505372 -103281083 + LTR50 LTR ERVL 72 144 -651 2217 121 7 0 chr12 40505372 40505679 -103280776 - AluSq SINE Alu -4 309 1 1251 223 249 34 chr12 40505679 40506090 -103280365 + LTR50 LTR ERVL 144 686 -109 358 234 184 59 chr12 40506130 40506386 -103280069 + L1M4 LINE L1 3852 4139 -2007 1879 200 138 52 chr12 40506516 40507210 -103279245 - L1MC5 LINE L1 -160 7801 7048 1891 145 14 43 chr12 40507211 40507371 -103279084 - MLT1A1 LTR MaLR -3 362 199 2004 80 112 0 chr12 40507371 40507647 -103278808 - AluSg SINE Alu -3 307 1 1891 145 14 43 chr12 40507647 40507831 -103278624 - MLT1A1 LTR MaLR -166 199 28 405 93 0 0 chr12 40507832 40507886 -103278569 + U6 snRNA snRNA 2 55 -52 23 0 0 0 chr12 40507890 40507913 -103278542 + AT_rich Low_complexity Low_complexity 1 23 0 342 166 23 10 chr12 40508033 40508107 -103278348 + AluS SINE Alu 1 58 -245 1362 155 39 0 chr12 40509336 40509568 -103276887 - LTR45 LTR ERV1 -284 241 1 * 1842 168 128 114 chr12 40509568 40509819 -103276636 - MER21B LTR ERV1 -276 587 341 5779 50 32 17 chr12 40509819 40510574 -103275881 - MER4E LTR ERV1 0 766 1 1842 168 128 114 chr12 40510574 40510880 -103275575 - MER21B LTR ERV1 -522 341 22 456 302 32 48 chr12 40510942 40511319 -103275136 - L1MB4 LINE L1 -2309 3837 3457 2037 155 0 0 chr12 40511319 40511622 -103274833 - AluSx SINE Alu -9 303 1 456 302 32 48 chr12 40511622 40511650 -103274805 - L1MB4 LINE L1 -2689 3457 3430 * 1408 197 15 42 chr12 40511626 40511956 -103274499 - L1PA13 LINE L1 -2 6161 5841 26 0 0 0 chr12 40512115 40512141 -103274314 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 40512175 40512196 -103274259 + GC_rich Low_complexity Low_complexity 1 21 0 1196 97 5 39 chr12 40562367 40562574 -103223881 + AluSc SINE Alu 110 309 0 420 238 98 67 chr12 40562616 40562809 -103223646 - L1M4 LINE L1 -1094 5052 4854 743 337 75 68 chr12 40563169 40563379 -103223076 + HAL1 LINE L1 1074 1281 -1226 683 208 14 0 chr12 40563379 40563523 -103222932 + L1MA10 LINE L1 6189 6334 0 743 337 75 68 chr12 40563523 40563977 -103222478 + HAL1 LINE L1 1281 1743 -764 976 280 73 10 chr12 40564358 40564658 -103221797 + MLT1I LTR MaLR 91 409 0 2198 198 29 2 chr12 40564783 40565198 -103221257 - MSTB LTR MaLR 0 426 1 2133 125 0 0 chr12 40565531 40565842 -103220613 - AluSx SINE Alu -1 311 1 196 208 0 21 chr12 40566165 40566213 -103220242 - L2 LINE L2 -1903 1411 1365 266 309 10 0 chr12 40567001 40567098 -103219357 - MIR3 SINE MIR -29 179 82 1124 141 11 0 chr12 40567899 40568083 -103218372 + L1PB4 LINE L1 5971 6156 0 240 344 81 22 chr12 40568217 40568360 -103218095 - MIR3 SINE MIR -63 145 13 1617 135 6 86 chr12 40568452 40568778 -103217677 + AluJo SINE Alu 1 300 -12 269 299 179 8 chr12 40569071 40569205 -103217250 + MIR3 SINE MIR 52 208 0 637 262 53 25 chr12 40570419 40570663 -103215792 + L2 LINE L2 468 718 -2596 406 262 41 25 chr12 40570927 40571049 -103215406 + L2 LINE L2 708 831 -2483 7393 93 8 24 chr12 40571775 40572991 -103213464 + L1MA2 LINE L1 5108 6304 0 1917 110 64 3 chr12 40573055 40573337 -103213118 - AluSg SINE Alu -11 299 1 667 276 76 32 chr12 40573505 40573874 -103212581 + MLT1J2 LTR MaLR 20 404 -46 239 238 79 16 chr12 40574265 40574328 -103212127 + L2 LINE L2 3245 3311 -2 484 101 261 0 chr12 40574526 40574645 -103211810 - MER33 DNA MER1_type -1 362 213 358 215 168 19 chr12 40574638 40574745 -103211710 - MER33 DNA MER1_type -197 127 5 * 279 97 32 16 chr12 40575154 40575216 -103211239 + CT-rich Low_complexity Low_complexity 1 63 0 29 28 0 0 chr12 40575270 40575306 -103211149 + GC_rich Low_complexity Low_complexity 1 36 0 252 333 164 26 chr12 40577013 40577244 -103209211 - L3b LINE CR1 -219 1364 1102 285 390 113 10 chr12 40577783 40577978 -103208477 - L3 LINE CR1 -1358 219 5 1943 150 0 10 chr12 40579167 40579481 -103206974 - AluSx SINE Alu -1 311 1 746 219 176 0 chr12 40579782 40579987 -103206468 - MIR SINE MIR -20 242 2 2130 96 7 7 chr12 40580006 40580299 -103206156 + AluSg SINE Alu 1 293 -17 486 206 282 24 chr12 40581780 40581950 -103204505 + MIR SINE MIR 49 262 0 188 246 70 0 chr12 40581967 40582024 -103204431 - L3 LINE CR1 -52 1525 1465 324 229 322 44 chr12 40582130 40582335 -103204120 - MIR SINE MIR 0 262 1 306 238 41 33 chr12 40583604 40583726 -103202729 - MER103 DNA DNA -35 131 9 915 168 21 37 chr12 40586705 40586895 -103199560 + MER5A DNA MER1_type 3 189 0 228 288 51 0 chr12 40587518 40587577 -103198878 - tRNA-Thr-ACT tRNA tRNA -15 62 1 2167 79 0 30 chr12 40588368 40588671 -103197784 - AluY SINE Alu -17 294 1 201 194 16 81 chr12 40588681 40588743 -103197712 - L2 LINE L2 -8 3305 3248 322 212 153 0 chr12 40589329 40589414 -103197041 - MER96 DNA MER1_type? 0 175 78 553 205 90 80 chr12 40589970 40590170 -103196285 - L1M2 LINE L1 -741 5556 5352 270 318 149 0 chr12 40590347 40590454 -103196001 + L2 LINE L2 3146 3268 -4 205 336 135 0 chr12 40590622 40590726 -103195729 + L2 LINE L2 3154 3271 -1 679 191 124 65 chr12 40590837 40591079 -103195376 - MER61D LTR ERV1 -3 750 338 1764 153 3 7 chr12 40591762 40592057 -103194398 - AluJb SINE Alu -10 302 9 2526 90 38 90 chr12 40592451 40592951 -103193504 + SVA Other Other 393 866 -520 1214 70 0 47 chr12 40592980 40593451 -103193004 + SVA Other Other 635 866 -520 6269 60 16 54 chr12 40593518 40594510 -103191945 + SVA Other Other 433 1386 0 359 267 83 33 chr12 40595270 40595390 -103191065 - MIR3 SINE MIR -38 170 45 1796 157 20 20 chr12 40598497 40598657 -103187798 - AluSx SINE Alu -13 299 137 2251 105 0 13 chr12 40598657 40598961 -103187494 - AluSx SINE Alu -12 300 1 1796 157 20 20 chr12 40598961 40599099 -103187356 - AluSx SINE Alu -174 138 1 220 261 269 8 chr12 40599103 40599222 -103187233 - MER5A DNA MER1_type 0 189 40 233 381 12 12 chr12 40599360 40599444 -103187011 - MIR SINE MIR -172 90 7 44636 38 2 2 chr12 40600034 40606016 -103180439 + L1PA3 LINE L1 26 6005 -150 231 179 26 0 chr12 40606172 40606211 -103180244 + MLT1K LTR MaLR 186 225 -363 911 125 15 0 chr12 40606241 40606377 -103180078 - AluSg/x SINE Alu -15 297 160 2735 29 3 6 chr12 40606397 40606708 -103179747 + L1PA2 LINE L1 5846 6155 0 2903 3 0 0 chr12 40608980 40609288 -103177167 + AluYa5 SINE Alu 1 308 -3 232 239 204 18 chr12 40609290 40609403 -103177052 - MIR SINE MIR -3 259 126 905 218 0 6 chr12 40609601 40609780 -103176675 + LTR41 LTR ERVL 1 178 -595 319 281 0 0 chr12 40609812 40609876 -103176579 + MER58B DNA MER1_type 1 64 -277 289 188 42 52 chr12 40610355 40610451 -103176004 + LTR41 LTR ERVL 673 767 -6 440 111 100 0 chr12 40610466 40610556 -103175899 + L1MA5 LINE L1 6201 6299 -1 2297 85 3 7 chr12 40610734 40611029 -103175426 + AluY SINE Alu 2 295 -16 23 68 0 0 chr12 40611261 40611305 -103175150 + AT_rich Low_complexity Low_complexity 1 44 0 694 272 25 71 chr12 40611512 40611836 -103174619 + L1MDa LINE L1 2 310 -6230 2251 88 3 3 chr12 40612311 40612608 -103173847 + AluSc SINE Alu 1 297 -12 939 202 59 95 chr12 40612615 40612759 -103173696 + L1MDa LINE L1 1301 1449 -5091 2094 109 0 35 chr12 40612759 40613070 -103173385 + AluSx SINE Alu 1 300 -12 939 202 59 95 chr12 40613070 40613106 -103173349 + L1MDa LINE L1 1449 1485 -5055 4534 62 20 0 chr12 40613106 40613652 -103172803 + L1PA7 LINE L1 5598 6154 0 939 202 59 95 chr12 40613652 40613931 -103172524 + L1MDa LINE L1 1485 1744 -4796 1036 226 144 33 chr12 40614187 40614492 -103171963 + Charlie1a DNA MER1_type 1 339 -1116 709 227 207 5 chr12 40616020 40616223 -103170232 + MER45C DNA AcHobo 1 244 -709 24 77 0 0 chr12 40616930 40616982 -103169473 + AT_rich Low_complexity Low_complexity 1 52 0 1770 123 95 58 chr12 40617603 40617928 -103168527 + MER1B DNA MER1_type 1 337 0 183 42 0 0 chr12 40618645 40618669 -103167786 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1510 164 3 45 chr12 40619152 40619462 -103166993 - AluJb SINE Alu -15 297 1 518 0 16 0 chr12 40619502 40619564 -103166891 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 625 194 15 22 chr12 40619575 40619709 -103166746 - AluJo SINE Alu -178 134 2 892 201 37 53 chr12 40620027 40620085 -103166370 - MER5A DNA MER1_type -3 186 129 1745 136 28 28 chr12 40620085 40620410 -103166045 + AluJb SINE Alu 1 325 0 892 201 37 53 chr12 40620410 40620538 -103165917 - MER5A DNA MER1_type -60 129 1 280 217 87 43 chr12 40620865 40620934 -103165521 + MIR3 SINE MIR 86 157 -51 2054 75 0 4 chr12 40621003 40621313 -103165142 - AluY SINE Alu 0 311 35 1983 139 41 6 chr12 40623272 40623588 -103162867 - MER51B LTR ERV1 -2 375 49 640 54 140 11 chr12 40623603 40623696 -103162759 - MER51A LTR ERV1 -529 105 1 319 230 35 11 chr12 40623916 40624003 -103162452 + MIR SINE MIR 160 248 -14 25 0 0 0 chr12 40624247 40624272 -103162183 + AT_rich Low_complexity Low_complexity 1 25 0 201 121 0 0 chr12 40625133 40625166 -103161289 + (TAA)n Simple_repeat Simple_repeat 3 35 0 313 315 31 31 chr12 40625206 40625333 -103161122 - L2 LINE L2 0 3313 3187 364 264 111 21 chr12 40625341 40625485 -103160970 - MIR SINE MIR -65 197 41 1241 223 44 54 chr12 40625493 40625901 -103160554 - MLT1A1 LTR MaLR 0 390 1 27 73 0 0 chr12 40626818 40626873 -103159582 + AT_rich Low_complexity Low_complexity 1 55 0 763 266 114 50 chr12 40627299 40627845 -103158610 - L1ME4a LINE L1 -12 6109 5529 688 151 0 0 chr12 40627849 40627964 -103158491 - AluJo SINE Alu 0 305 191 609 164 67 0 chr12 40627969 40628073 -103158382 - AluJo SINE Alu -201 111 1 265 250 105 0 chr12 40628078 40628202 -103158253 - L1ME4a LINE L1 -2558 5437 5301 991 268 61 22 chr12 40628209 40628700 -103157755 + MER90 LTR ERV1 14 559 -16 421 320 88 22 chr12 40628703 40629022 -103157433 - L1ME4a LINE L1 -881 5265 4926 282 274 97 18 chr12 40629142 40629255 -103157200 + L2 LINE L2 3189 3310 -3 261 287 113 0 chr12 40630438 40630553 -103155902 - MIR3 SINE MIR -47 161 34 283 93 0 37 chr12 40630872 40630926 -103155529 + (TTC)n Simple_repeat Simple_repeat 1 52 0 452 72 0 155 chr12 40630926 40630975 -103155480 - MER41A LTR ERV1 -73 481 453 2469 69 10 0 chr12 40630975 40631281 -103155174 + AluY SINE Alu 1 309 -2 452 72 0 155 chr12 40631281 40631328 -103155127 - MER41A LTR ERV1 -101 453 400 360 305 152 6 chr12 40631455 40631619 -103154836 + MIR SINE MIR 4 191 -71 1084 169 196 8 chr12 40633763 40634018 -103152437 - MER58B DNA MER1_type -7 334 32 502 231 0 0 chr12 40634261 40634352 -103152103 + Tigger3(Golem) DNA MER2_type 2938 3028 -1 2387 287 61 28 chr12 40634385 40635397 -103151058 - HAL1 LINE L1 -1341 1166 121 5261 148 25 80 chr12 40635410 40635678 -103150777 - L1MA5 LINE L1 0 6300 6019 2278 107 0 0 chr12 40635678 40635976 -103150479 - AluSg SINE Alu -8 302 5 5261 148 25 80 chr12 40635976 40636919 -103149536 - L1MA5 LINE L1 -281 6019 5118 2681 161 66 108 chr12 40637039 40637679 -103148776 + L1M4c LINE L1 5 617 -5767 * 4229 160 55 52 chr12 40637676 40638606 -103147849 + L1MC3 LINE L1 6845 7777 -8 2074 123 17 7 chr12 40638622 40638914 -103147541 - AluSx SINE Alu -17 295 1 237 177 35 57 chr12 40638935 40639076 -103147379 + (TTATA)n Simple_repeat Simple_repeat 5 142 0 1624 182 55 0 chr12 40639292 40639583 -103146872 + AluJo SINE Alu 1 307 -5 1645 176 94 77 chr12 40640196 40640671 -103145784 + MER66A LTR ERV1 97 478 0 2021 114 3 27 chr12 40641032 40641331 -103145124 + AluSx SINE Alu 1 292 -20 414 267 86 27 chr12 40641525 40641712 -103144743 + L1ME LINE L1 5627 5791 -330 348 295 187 7 chr12 40641713 40641852 -103144603 + MIR SINE MIR 32 195 -67 601 275 22 17 chr12 40642022 40642200 -103144255 - MIR SINE MIR 0 262 84 1100 308 51 34 chr12 40642262 40642659 -103143796 - MLT1L LTR MaLR -4 611 200 2030 164 32 18 chr12 40642659 40642972 -103143483 + MER7A DNA MER2_type 2 320 -2718 1601 88 9 18 chr12 40642972 40643189 -103143266 + AluY SINE Alu 83 297 -14 2030 164 32 18 chr12 40643189 40643217 -103143238 + MER7A DNA MER2_type 320 346 0 1100 308 51 34 chr12 40643217 40643384 -103143071 - MLT1L LTR MaLR -415 200 37 691 227 136 54 chr12 40643402 40643644 -103142811 + MLT1F1 LTR MaLR 60 321 -246 623 224 6 65 chr12 40643688 40643766 -103142689 + LTR33 LTR ERVL 1 65 -456 3605 122 18 50 chr12 40643766 40644309 -103142146 - MER1A DNA MER1_type 0 527 2 623 224 6 65 chr12 40644309 40644400 -103142055 + LTR33 LTR ERVL 65 160 -361 1748 223 49 13 chr12 40644433 40644819 -103141636 + MLT1C LTR MaLR 66 465 -2 225 338 86 0 chr12 40645034 40645232 -103141223 - L1ME LINE L1 -207 5914 5700 214 286 78 13 chr12 40646224 40646301 -103140154 - L2 LINE L2 -5 3267 3186 591 294 151 65 chr12 40646583 40647087 -103139368 - L2 LINE L2 0 3313 2761 590 271 121 19 chr12 40647087 40647294 -103139161 + MER101B LTR ERV1 1 228 -342 252 214 103 86 chr12 40647439 40647556 -103138899 + MER101 LTR ERV1 327 445 -29 734 300 123 11 chr12 40647609 40647886 -103138569 - L2 LINE L2 -575 2739 2432 236 209 33 5 chr12 40647966 40648031 -103138424 + MLT1I LTR MaLR 98 142 -267 1366 246 121 45 chr12 40648107 40648179 -103138276 + L1MCa LINE L1 959 1024 -5583 7810 18 0 1 chr12 40648179 40649422 -103137033 + L1PA3 LINE L1 4913 6155 0 1366 246 121 45 chr12 40649422 40649802 -103136653 + L1MCa LINE L1 1024 1374 -5233 194 0 0 37 chr12 40649802 40649829 -103136626 + (CA)n Simple_repeat Simple_repeat 2 27 0 1366 246 121 45 chr12 40649829 40650091 -103136364 + L1MCa LINE L1 1374 1615 -4992 2426 90 0 6 chr12 40650091 40650402 -103136053 + AluY SINE Alu 1 309 -2 1366 246 121 45 chr12 40650402 40650718 -103135737 + L1MCa LINE L1 1615 2277 -4330 727 115 0 0 chr12 40650718 40650814 -103135641 + L1P3 LINE L1 1 96 -6365 * 20142 151 22 35 chr12 40650812 40651809 -103134646 + L1MC2 LINE L1 1162 2170 -4489 2231 106 0 16 chr12 40651809 40652121 -103134334 - AluY SINE Alu -4 307 1 20142 151 22 35 chr12 40652121 40654180 -103132275 + L1MC2 LINE L1 2170 4254 -2405 517 91 0 0 chr12 40654180 40654255 -103132200 + L1PA7 LINE L1 6078 6154 0 20142 151 22 35 chr12 40654255 40654346 -103132109 + L1MC2 LINE L1 4254 4345 -2314 2377 66 0 23 chr12 40654346 40654649 -103131806 + AluY SINE Alu 1 296 -15 20142 151 22 35 chr12 40654649 40655019 -103131436 + L1MC2 LINE L1 4345 4718 -1941 2229 92 3 3 chr12 40655019 40655322 -103131133 + AluSg SINE Alu 1 303 -7 20142 151 22 35 chr12 40655322 40655844 -103130611 + L1MC2 LINE L1 4718 5245 -1414 1066 78 0 26 chr12 40655844 40655998 -103130457 + L1PA10 LINE L1 6009 6158 -10 20142 151 22 35 chr12 40655998 40657413 -103129042 + L1MC2 LINE L1 5245 6504 -155 1499 297 100 53 chr12 40657476 40657803 -103128652 + L1MEd LINE L1 46 356 -5763 1489 163 43 63 chr12 40657803 40658104 -103128351 + AluJo SINE Alu 2 296 -16 1499 297 100 53 chr12 40658104 40658934 -103127521 + L1MEd LINE L1 356 1257 -4862 843 64 0 0 chr12 40659124 40659234 -103127221 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 375 315 96 40 chr12 40661263 40661514 -103124941 + HAL1b LINE L1 2 266 -1082 594 305 28 21 chr12 40661549 40661831 -103124624 + HAL1b LINE L1 331 614 -734 220 274 0 27 chr12 40661920 40661993 -103124462 + GA-rich Low_complexity Low_complexity 2 72 0 276 288 6 25 chr12 40662181 40662344 -103124111 + L1MEd LINE L1 2130 2289 -3840 284 0 28 0 chr12 40662348 40662384 -103124071 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1580 136 121 11 chr12 40662572 40662931 -103123524 + MSTA LTR MaLR 1 428 0 742 335 38 21 chr12 40662983 40663177 -103123278 + L1MEd LINE L1 2647 2836 -3293 181 0 33 33 chr12 40663177 40663207 -103123248 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2011 139 3 0 chr12 40663210 40663504 -103122951 - AluSx SINE Alu -17 295 1 742 335 38 21 chr12 40663504 40663782 -103122673 + L1MEd LINE L1 2837 3131 -2998 891 275 19 30 chr12 40664025 40664396 -103122059 + L1MEd LINE L1 3993 4359 -1770 * 2043 124 39 117 chr12 40664375 40664812 -103121643 + L1PA13 LINE L1 5740 6142 -4 1114 239 45 6 chr12 40664793 40665148 -103121307 + L1MEd LINE L1 4341 4709 -1420 * 954 242 37 24 chr12 40665151 40665531 -103120924 + L1MEd LINE L1 4782 5166 -963 430 110 0 85 chr12 40665531 40665613 -103120842 - AluSg/x SINE Alu -19 293 219 5753 308 55 23 chr12 40665735 40666103 -103120352 - ERVL LTR ERVL -1737 3917 3562 2012 145 7 0 chr12 40666103 40666399 -103120056 + AluJb SINE Alu 1 298 -14 5753 308 55 23 chr12 40666399 40667947 -103118508 - ERVL LTR ERVL -2092 3562 1916 2251 99 10 10 chr12 40667947 40668260 -103118195 - AluSq SINE Alu 0 313 1 5753 308 55 23 chr12 40668260 40668605 -103117850 - ERVL LTR ERVL -3738 1916 1583 299 109 0 0 chr12 40668924 40668970 -103117485 + Alu SINE Alu 255 300 -1 602 340 77 27 chr12 40668978 40669801 -103116654 - ERVL LTR ERVL -4410 1244 352 985 242 70 110 chr12 40670084 40670887 -103115568 - LTR41 LTR ERVL 0 773 3 878 231 71 29 chr12 40670887 40671237 -103115218 - L1M4 LINE L1 -1570 4576 4212 1980 53 72 0 chr12 40671268 40671532 -103114923 - L1PA4 LINE L1 -3 6152 5870 4942 173 31 39 chr12 40671542 40672059 -103114396 - L1MA10 LINE L1 -13 6321 5802 213 39 0 0 chr12 40672059 40672085 -103114370 + (CA)n Simple_repeat Simple_repeat 1 26 0 4942 173 31 39 chr12 40672085 40672826 -103113629 - L1MA10 LINE L1 -532 5802 5051 1602 256 52 8 chr12 40672823 40673797 -103112658 - L1ME LINE L1 -460 5704 4695 * 5606 145 44 17 chr12 40673792 40675207 -103111248 - L1MA8 LINE L1 0 6291 4848 229 57 0 0 chr12 40675214 40675249 -103111206 - L1M2c LINE L1 -4479 2628 2594 4200 166 34 14 chr12 40675255 40676088 -103110367 - L1M2c LINE L1 -4496 2611 1763 2618 208 74 22 chr12 40676081 40676702 -103109753 - L1M2c LINE L1 -6377 653 1 * 3172 231 102 27 chr12 40676695 40677796 -103108659 - L1ME LINE L1 -1421 4725 3543 256 299 25 5 chr12 40678084 40678285 -103108170 + L1ME2 LINE L1 2121 2325 -3821 1378 212 58 49 chr12 40678497 40678926 -103107529 + MLT1C LTR MaLR 17 449 -18 1817 175 7 7 chr12 40679024 40679321 -103107134 - AluJo SINE Alu -15 297 1 2486 57 0 10 chr12 40679403 40679717 -103106738 + AluY SINE Alu 1 311 0 265 259 0 18 chr12 40679846 40679958 -103106497 + L1ME2 LINE L1 2879 2988 -3158 240 291 71 25 chr12 40680927 40681123 -103105332 + L1ME2 LINE L1 4628 4832 -1314 1384 103 5 0 chr12 40681151 40681336 -103105119 + AluSc SINE Alu 1 186 -123 405 122 100 0 chr12 40681447 40681537 -103104918 - L1MA5 LINE L1 -1 6299 6201 271 188 42 52 chr12 40681552 40681648 -103104807 - LTR41 LTR ERVL -6 767 673 508 234 19 9 chr12 40681896 40682003 -103104452 - FLAM_C SINE Alu -35 108 1 2612 36 3 3 chr12 40682084 40682388 -103104067 + AluY SINE Alu 1 304 -7 1403 182 68 5 chr12 40682389 40682755 -103103700 + L1ME2 LINE L1 5363 5817 -347 1228 131 0 0 chr12 40682775 40682950 -103103505 + AluSg/x SINE Alu 128 302 -8 791 246 167 21 chr12 40682954 40683242 -103103213 + L1ME2 LINE L1 5833 6162 -2 1120 140 60 157 chr12 40683379 40683726 -103102729 + Charlie4a DNA MER1_type 37 339 -1622 2863 111 53 31 chr12 40683726 40684238 -103102217 - L1MB3 LINE L1 0 6183 5661 1120 140 60 157 chr12 40684238 40684303 -103102152 + Charlie4a DNA MER1_type 339 409 -99 1791 125 14 7 chr12 40684323 40684604 -103101851 - AluSx SINE Alu -27 285 3 976 155 207 52 chr12 40684648 40684899 -103101556 - AluJo SINE Alu -12 290 1 470 329 41 43 chr12 40684970 40685387 -103101068 + HAL1b LINE L1 159 574 -774 1408 177 78 45 chr12 40685472 40685919 -103100536 + L1MC5 LINE L1 7084 7545 -416 825 203 56 49 chr12 40685923 40686229 -103100226 + L1MC5 LINE L1 7603 7910 -51 22 0 0 0 chr12 40686240 40686262 -103100193 + AT_rich Low_complexity Low_complexity 1 22 0 1053 199 28 0 chr12 40686354 40686565 -103099890 + AluJo SINE Alu 84 300 -12 227 229 72 0 chr12 40686568 40686651 -103099804 + HAL1 LINE L1 2044 2132 -375 1334 184 36 183 chr12 40686707 40686801 -103099654 - MER69 DNA AcHobo -301 2225 2119 2938 6 0 0 chr12 40686801 40687119 -103099336 + AluYb8 SINE Alu 1 318 0 1334 184 36 183 chr12 40687119 40687884 -103098571 - MER69 DNA AcHobo -407 2119 1492 6850 128 36 12 chr12 40687916 40688155 -103098300 - L1MA2 LINE L1 0 6304 6072 240 35 0 0 chr12 40688155 40688184 -103098271 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 6850 128 36 12 chr12 40688184 40689509 -103096946 - L1MA2 LINE L1 -232 6072 4687 248 141 13 39 chr12 40689519 40689597 -103096858 + (TA)n Simple_repeat Simple_repeat 1 76 0 2516 85 11 6 chr12 40689603 40689957 -103096498 + L1PB1 LINE L1 5783 6138 -13 28 29 0 0 chr12 40689995 40690030 -103096425 + AT_rich Low_complexity Low_complexity 1 35 0 853 295 120 38 chr12 40691044 40691452 -103095003 - L1MC4a LINE L1 -747 5399 5026 2332 103 0 3 chr12 40691452 40691763 -103094692 - AluSx SINE Alu -2 310 1 853 295 120 38 chr12 40691763 40693201 -103093254 - L1MC4a LINE L1 -1120 5026 3928 210 143 0 0 chr12 40693241 40693276 -103093179 + (TA)n Simple_repeat Simple_repeat 2 36 0 327 317 137 34 chr12 40693381 40693703 -103092752 - L1MC4a LINE L1 -2412 3734 3380 287 226 36 12 chr12 40693705 40693789 -103092666 - L1MC4a LINE L1 -3139 3007 2922 693 176 0 7 chr12 40693850 40693986 -103092469 - L1MA10 LINE L1 -3 6331 6197 325 293 0 19 chr12 40694103 40694209 -103092246 - MER5A DNA MER1_type -71 118 15 259 297 54 54 chr12 40694305 40694416 -103092039 + MIR SINE MIR 14 124 -138 293 0 27 0 chr12 40695077 40695114 -103091341 + (TG)n Simple_repeat Simple_repeat 1 38 0 261 0 0 0 chr12 40695759 40695788 -103090667 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 262 356 7 0 chr12 40696203 40696352 -103090103 + T-rich Low_complexity Low_complexity 3 152 0 2018 134 3 6 chr12 40697121 40697442 -103089013 - Tigger1 DNA MER2_type -43 2375 2056 853 184 6 17 chr12 40697442 40697621 -103088834 + FAM SINE Alu 1 44 -5 3886 102 5 10 chr12 40697621 40698218 -103088237 - Tigger1 DNA MER2_type -360 2058 1465 1766 147 58 10 chr12 40698567 40698859 -103087596 - AluJb SINE Alu -6 306 1 1920 61 0 0 chr12 40699169 40699399 -103087056 - AluY SINE Alu -6 305 76 673 281 18 0 chr12 40699670 40699841 -103086614 - MER21B LTR ERV1 -367 496 323 * 3984 108 10 3 chr12 40699839 40700450 -103086005 - Tigger1 DNA MER2_type -941 1477 863 3935 136 54 0 chr12 40700447 40700937 -103085518 - Tigger1 DNA MER2_type -1713 705 168 * 264 59 0 0 chr12 40700937 40700971 -103085484 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3935 136 54 0 chr12 40700971 40701149 -103085306 - Tigger1 DNA MER2_type -2250 168 1 490 76 0 0 chr12 40702537 40702603 -103083852 - L1PA8 LINE L1 -5 6167 6102 251 328 0 9 chr12 40702827 40702943 -103083512 - L1ME4a LINE L1 -44 6077 5963 489 303 93 17 chr12 40703014 40703304 -103083151 - L1ME4a LINE L1 -174 5947 5636 637 270 81 31 chr12 40703322 40703544 -103082911 - MIR SINE MIR -5 257 25 330 175 0 0 chr12 40703563 40703620 -103082835 - L1ME4a LINE L1 -500 5621 5565 3620 156 23 5 chr12 40705083 40705691 -103080764 + LTR31 LTR ERV1 1 619 0 2936 160 33 86 chr12 40706095 40706825 -103079630 - LTR8 LTR ERV1 0 691 1 277 343 70 14 chr12 40707093 40707236 -103079219 - L2 LINE L2 -205 3067 2917 322 285 76 104 chr12 40707499 40707664 -103078791 - L3b LINE CR1 -28 1555 1400 2026 141 3 32 chr12 40707664 40707977 -103078478 + AluSx SINE Alu 1 304 -8 322 285 76 104 chr12 40707977 40708099 -103078356 - L3b LINE CR1 -183 1400 1276 566 258 54 6 chr12 40708677 40708843 -103077612 + MIR SINE MIR 40 212 -50 23 0 0 0 chr12 40708845 40708868 -103077587 + AT_rich Low_complexity Low_complexity 1 23 0 1660 193 120 15 chr12 40709359 40709752 -103076703 - MER63B DNA MER1_type -1 435 2 674 260 85 36 chr12 40709814 40710037 -103076418 + MIR SINE MIR 2 235 -27 409 327 12 28 chr12 40710090 40710341 -103076114 - L1M4 LINE L1 -2158 3988 3742 418 97 0 16 chr12 40710589 40710651 -103075804 - MER5B DNA MER1_type -1 177 117 3973 82 47 12 chr12 40710651 40711227 -103075228 + L1PA13 LINE L1 5563 6158 -5 414 0 0 0 chr12 40711231 40711277 -103075178 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 431 129 129 0 chr12 40711287 40711388 -103075067 + L1MA7 LINE L1 6169 6282 -9 228 288 22 43 chr12 40711436 40711575 -103074880 - FRAM SINE Alu 0 166 31 625 224 0 0 chr12 40711752 40711859 -103074596 - FRAM SINE Alu -70 106 1 484 214 0 0 chr12 40711871 40711960 -103074495 - MER5B DNA MER1_type -89 89 1 2429 68 3 0 chr12 40712230 40712523 -103073932 - AluSp SINE Alu -18 295 2 2437 117 5 0 chr12 40712600 40712968 -103073487 - L1PB1 LINE L1 0 6151 5782 316 307 0 0 chr12 40712980 40713068 -103073387 + L1MC4 LINE L1 6615 6702 -1340 239 227 45 0 chr12 40713075 40713163 -103073292 - L1MC4 LINE L1 -1337 6705 6614 8675 175 28 4 chr12 40713165 40715494 -103070961 - L1P5 LINE L1 -359 5792 3431 3279 223 11 0 chr12 40715491 40716326 -103070129 + L1P5 LINE L1 2578 3421 -2725 * 301 248 20 30 chr12 40716327 40716428 -103070027 - L1M4 LINE L1 -2974 3172 3073 304 229 0 0 chr12 40717035 40717096 -103069359 - MER58A DNA MER1_type 0 224 164 418 151 0 32 chr12 40717106 40717199 -103069256 + MER53 DNA DNA 97 186 -3 * 520 168 0 0 chr12 40717116 40717211 -103069244 - MER53 DNA DNA -94 95 1 774 213 31 0 chr12 40717220 40717380 -103069075 - MER58A DNA MER1_type 0 165 1 786 233 11 11 chr12 40717388 40717577 -103068878 - MER5A DNA MER1_type 0 189 1 218 299 30 0 chr12 40717734 40717801 -103068654 - MER91A DNA MER1_type 0 196 128 3593 75 15 2 chr12 40717820 40718298 -103068157 - L1PA11 LINE L1 0 6174 5691 555 305 30 0 chr12 40718298 40718429 -103068026 - MER91A DNA MER1_type -44 152 18 218 284 105 21 chr12 40718951 40719046 -103067409 + L2 LINE L2 3168 3270 -2 195 422 0 0 chr12 40719208 40719310 -103067145 - L3 LINE CR1 -220 1357 1256 317 256 51 58 chr12 40719323 40719479 -103066976 + L1M4 LINE L1 2894 3048 -3098 2187 97 37 0 chr12 40719891 40720189 -103066266 + AluSx SINE Alu 2 310 -2 231 242 0 0 chr12 40720189 40720251 -103066204 + GA-rich Low_complexity Low_complexity 1 62 0 2105 137 0 3 chr12 40720302 40720602 -103065853 + AluJb SINE Alu 12 310 -2 239 248 64 57 chr12 40720747 40720888 -103065567 + L1MDa LINE L1 1665 1806 -4734 939 186 61 96 chr12 40720945 40721257 -103065198 + MLT1E1 LTR MaLR 287 587 -67 292 124 56 0 chr12 40721334 40721400 -103065055 + MLT1E1 LTR MaLR 433 654 0 2385 60 3 3 chr12 40721408 40721706 -103064749 - AluY SINE Alu -13 298 1 896 261 86 58 chr12 40721720 40722163 -103064292 + L1M4 LINE L1 3341 3813 -2333 1756 131 52 49 chr12 40722163 40722469 -103063986 - AluJo SINE Alu 0 312 6 896 261 86 58 chr12 40722469 40722738 -103063717 + L1M4 LINE L1 3813 4073 -2073 2161 99 0 3 chr12 40725113 40725459 -103060996 + AluSg1 SINE Alu 1 345 0 2509 110 77 28 chr12 40726349 40726776 -103059679 - MER83 LTR ERV1 0 448 1 387 0 0 0 chr12 40727250 40727290 -103059165 + (CA)n Simple_repeat Simple_repeat 1 83 0 387 0 0 0 chr12 40727290 40727333 -103059122 + (CA)n Simple_repeat Simple_repeat 2 44 0 5466 107 58 11 chr12 40727512 40728478 -103057977 + L1MA8 LINE L1 5281 6291 0 204 339 142 8 chr12 40728691 40728818 -103057637 + MIR SINE MIR 4 147 -115 198 299 154 36 chr12 40728984 40729205 -103057250 - L3b LINE CR1 -134 1449 1203 438 20 0 0 chr12 40730186 40730237 -103056218 + (CA)n Simple_repeat Simple_repeat 1 51 0 264 59 0 0 chr12 40730254 40730288 -103056167 + (GA)n Simple_repeat Simple_repeat 1 34 0 376 267 29 0 chr12 40730689 40730794 -103055661 - L2 LINE L2 -11 3302 3195 1810 188 10 0 chr12 40731024 40731333 -103055122 + AluJo SINE Alu 1 312 0 2103 118 3 29 chr12 40732055 40732368 -103054087 + AluSx SINE Alu 1 305 -7 264 30 0 0 chr12 40732383 40732416 -103054039 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7672 18 1 1 chr12 40732416 40733971 -103052484 - L1PA3 LINE L1 -10 6145 4590 2357 122 14 0 chr12 40734037 40734398 -103052057 - L1PA16 LINE L1 -3 6163 5798 6749 176 18 12 chr12 40734525 40734794 -103051661 - L1PA16 LINE L1 -548 5618 5352 2228 67 24 7 chr12 40734794 40735092 -103051363 + AluY SINE Alu 1 303 -8 6749 176 18 12 chr12 40735092 40736556 -103049899 - L1PA16 LINE L1 -814 5352 3877 472 238 107 21 chr12 40736553 40736834 -103049621 - L1M4 LINE L1 -1736 4410 4106 * 521 59 0 0 chr12 40736882 40736950 -103049505 - AluS SINE Alu -245 68 1 1827 100 0 8 chr12 40736980 40737229 -103049226 + AluSg SINE Alu 38 284 -26 725 176 0 63 chr12 40738311 40738453 -103048002 + AluJo SINE Alu 1 133 -169 456 342 31 35 chr12 40739153 40739410 -103047045 - L3 LINE CR1 -374 1203 948 1590 161 72 10 chr12 40741028 40741320 -103045135 + AluJb SINE Alu 1 310 -2 256 138 0 35 chr12 40741320 40741378 -103045077 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 2004 152 0 0 chr12 40742144 40742459 -103043996 + AluSx SINE Alu 1 315 0 1595 160 90 54 chr12 40742614 40743128 -103043327 - MER67C LTR ERV1 -8 506 1 213 234 21 0 chr12 40743210 40743257 -103043198 + GA-rich Low_complexity Low_complexity 4 51 0 264 292 200 0 chr12 40743282 40743412 -103043043 - L2 LINE L2 -15 3257 3102 423 191 291 0 chr12 40743451 40743592 -103042863 - MIR SINE MIR -1 261 80 861 144 62 0 chr12 40743601 40743747 -103042708 + AluJo SINE Alu 141 295 -7 2211 70 3 45 chr12 40745803 40746149 -103040306 - AluSp SINE Alu 0 313 1 225 0 0 0 chr12 40746321 40746346 -103040109 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 390 276 102 70 chr12 40746523 40746872 -103039583 - L1ME3A LINE L1 -304 5866 5530 1966 161 23 7 chr12 40746872 40747177 -103039278 - AluJb SINE Alu -2 310 1 390 276 102 70 chr12 40747177 40747551 -103038904 - L1ME3A LINE L1 -640 5530 5106 2126 80 56 14 chr12 40797739 40798025 -102988430 - AluSg SINE Alu -11 299 2 258 292 67 25 chr12 40798419 40798539 -102987916 - MIR SINE MIR -1 261 137 186 200 0 0 chr12 40798749 40798779 -102987676 - MIR SINE MIR -65 143 114 2149 116 0 10 chr12 40799453 40799745 -102986710 + AluSx SINE Alu 18 306 -6 2111 132 0 7 chr12 40799745 40800055 -102986400 + AluSg SINE Alu 1 308 -2 3616 165 39 53 chr12 40800055 40800612 -102985843 + L1MD1 LINE L1 5443 5988 -254 2132 99 3 0 chr12 40800612 40800917 -102985538 + AluY SINE Alu 1 306 0 3616 165 39 53 chr12 40800917 40801150 -102985305 + L1MD1 LINE L1 5988 6223 -19 180 179 0 0 chr12 40802813 40802852 -102983603 + GA-rich Low_complexity Low_complexity 5 43 0 377 311 138 13 chr12 40806728 40806953 -102979502 - MIR SINE MIR 0 262 10 929 150 0 0 chr12 40807438 40807619 -102978836 + FLAM_C SINE Alu 1 181 0 432 236 0 0 chr12 40808214 40808303 -102978152 - L2 LINE L2 0 3313 3225 711 203 8 0 chr12 40808395 40808518 -102977937 + FLAM_A SINE Alu 1 124 -9 189 0 0 0 chr12 40808518 40808539 -102977916 + (GA)n Simple_repeat Simple_repeat 2 22 0 236 355 104 43 chr12 40809032 40809454 -102977001 - L2 LINE L2 -560 2754 2307 372 325 82 14 chr12 40809458 40809738 -102976717 - L2 LINE L2 -1122 2192 1894 687 174 9 9 chr12 40811040 40811155 -102975300 + FLAM_A SINE Alu 1 115 -18 2553 66 3 0 chr12 40811158 40811459 -102974996 - AluSp SINE Alu -11 302 1 274 207 17 0 chr12 40812791 40812849 -102973606 - MIR SINE MIR -2 260 202 1630 116 5 0 chr12 40815714 40815929 -102970526 - AluSx SINE Alu -96 216 1 1104 205 167 3 chr12 40815986 40816279 -102970176 + MER58B DNA MER1_type 1 341 0 255 299 22 52 chr12 40816295 40816429 -102970026 + L2 LINE L2 3134 3263 -9 230 269 0 26 chr12 40817441 40817519 -102968936 + G-rich Low_complexity Low_complexity 2 77 0 198 191 0 0 chr12 40817555 40817602 -102968853 + CT-rich Low_complexity Low_complexity 3 49 0 262 337 82 0 chr12 40817838 40817936 -102968519 - L2 LINE L2 -6 3266 3161 799 157 13 13 chr12 40818362 40818521 -102967934 + L1MC2 LINE L1 5139 5297 -849 2831 134 73 61 chr12 40818521 40819116 -102967339 + MER4B LTR ERV1 1 772 -7 4850 136 70 20 chr12 40819120 40820020 -102966435 + L1MC2 LINE L1 5291 6235 -109 1961 146 3 3 chr12 40820020 40820314 -102966141 + AluJb SINE Alu 1 294 -18 854 158 14 53 chr12 40820314 40820524 -102965931 + L1M1 LINE L1 5315 5522 -688 603 199 6 12 chr12 40820526 40820687 -102965768 + GA-rich Low_complexity Low_complexity 4 163 0 1633 164 23 7 chr12 40820687 40820992 -102965463 + L1M4 LINE L1 5477 5786 -392 950 81 0 8 chr12 40820997 40821121 -102965334 - MER4E LTR ERV1 -3 763 641 1244 199 107 57 chr12 40821122 40821544 -102964911 + LTR7 LTR ERV1 1 443 -7 655 146 0 69 chr12 40821573 40821703 -102964752 + HERVH LTR ERV1 339 459 -7254 9385 188 19 41 chr12 40821763 40824354 -102962101 + HERVH LTR ERV1 590 2992 -3622 5614 165 21 15 chr12 40824340 40825455 -102961000 + HERVH LTR ERV1 3140 4571 -2083 * 591 273 166 65 chr12 40826359 40826920 -102959535 + L2 LINE L2 2647 3267 -5 184 183 17 33 chr12 40826923 40826983 -102959472 + GA-rich Low_complexity Low_complexity 3 61 0 446 169 11 0 chr12 40827406 40827495 -102958960 + GA-rich Low_complexity Low_complexity 3 92 0 231 312 32 32 chr12 40827658 40827783 -102958672 + L2 LINE L2 3172 3296 -17 201 217 72 14 chr12 40827857 40827926 -102958529 + MIR3 SINE MIR 108 180 -28 299 179 15 0 chr12 40828395 40828462 -102957993 + CT-rich Low_complexity Low_complexity 2 69 0 201 74 0 0 chr12 40830069 40830096 -102956359 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 317 293 207 13 chr12 40830126 40830276 -102956179 + MIR3 SINE MIR 23 201 -7 297 0 0 0 chr12 40832495 40832528 -102953927 + (TC)n Simple_repeat Simple_repeat 2 34 0 2272 104 0 0 chr12 40832535 40832832 -102953623 - AluSg SINE Alu -13 297 1 24 0 0 0 chr12 40833273 40833297 -102953158 + AT_rich Low_complexity Low_complexity 1 24 0 294 265 60 8 chr12 40833386 40833492 -102952963 + MIR SINE MIR 9 117 -91 517 16 0 0 chr12 40833931 40833994 -102952461 - AluY SINE Alu -10 300 238 24 67 0 0 chr12 40834143 40834188 -102952267 + AT_rich Low_complexity Low_complexity 1 45 0 2271 103 3 22 chr12 40834307 40834618 -102951837 - AluSx SINE Alu -7 305 1 2305 101 0 0 chr12 40835470 40835757 -102950698 - AluSx SINE Alu -25 287 1 728 226 22 100 chr12 40835851 40836081 -102950374 - MIR SINE MIR -21 241 30 2276 114 0 13 chr12 40836096 40836412 -102950043 - AluSx SINE Alu 0 312 1 1762 139 40 15 chr12 40836952 40837226 -102949229 - AluSx SINE Alu -30 282 2 33 43 0 0 chr12 40837320 40837367 -102949088 + AT_rich Low_complexity Low_complexity 1 47 0 1695 179 0 19 chr12 40837403 40837721 -102948734 - AluJb SINE Alu 0 312 1 1552 188 0 46 chr12 40837920 40838100 -102948355 - AluJo SINE Alu -1 311 151 2418 87 7 0 chr12 40838100 40838398 -102948057 - AluSq SINE Alu -13 300 1 1552 188 0 46 chr12 40838398 40838541 -102947914 - AluJo SINE Alu -161 151 3 529 255 159 0 chr12 40839138 40839295 -102947160 + MER5A DNA MER1_type 7 188 -1 447 295 26 47 chr12 40839327 40839520 -102946935 - MER20B DNA MER1_type -591 192 4 25 0 0 0 chr12 40839755 40839780 -102946675 + AT_rich Low_complexity Low_complexity 1 25 0 740 183 0 8 chr12 40839811 40839937 -102946518 - FLAM_C SINE Alu -7 126 2 2469 68 7 0 chr12 40840005 40840300 -102946155 + AluSq SINE Alu 1 297 -16 2214 118 3 0 chr12 40841202 40841506 -102944949 - AluSx SINE Alu -7 305 1 31 26 0 0 chr12 40842037 40842075 -102944380 + AT_rich Low_complexity Low_complexity 1 38 0 2269 104 0 0 chr12 40842075 40842363 -102944092 - AluSx SINE Alu -24 288 1 1817 161 0 23 chr12 40842365 40842664 -102943791 - AluJo SINE Alu -16 296 5 1329 136 19 14 chr12 40842779 40842992 -102943463 - AluJb SINE Alu -12 300 87 846 213 48 117 chr12 40843084 40843177 -102943278 + MER46C DNA MER2_type 5 103 -235 2290 109 0 0 chr12 40843177 40843480 -102942975 + AluSx SINE Alu 1 303 -9 846 213 48 117 chr12 40843480 40843738 -102942717 + MER46C DNA MER2_type 103 332 -6 29 28 0 0 chr12 40844733 40844769 -102941686 + AT_rich Low_complexity Low_complexity 1 36 0 1801 148 4 7 chr12 40844797 40845075 -102941380 + AluJb SINE Alu 18 294 -18 2177 117 3 3 chr12 40845293 40845593 -102940862 - AluSx SINE Alu -12 300 1 329 273 180 0 chr12 40845619 40845780 -102940675 - L1ME4a LINE L1 -2 6119 5930 1675 179 7 29 chr12 40845857 40846165 -102940290 + AluJo SINE Alu 1 301 -11 2103 131 7 10 chr12 40848406 40848704 -102937751 + AluSx SINE Alu 1 297 -15 351 0 44 0 chr12 40849677 40849722 -102936733 + (TTTTG)n Simple_repeat Simple_repeat 4 180 0 1954 131 0 11 chr12 40849722 40850005 -102936450 - AluSg SINE Alu -1 324 1 394 318 63 33 chr12 40850197 40850572 -102935883 - L1MC4 LINE L1 -643 7399 7009 355 240 52 26 chr12 40850642 40850796 -102935659 - L1MC4 LINE L1 -1004 7038 6881 231 36 0 0 chr12 40851017 40851045 -102935410 + (T)n Simple_repeat Simple_repeat 1 28 0 2177 123 7 0 chr12 40852013 40852313 -102934142 + AluSx SINE Alu 1 302 -10 1731 140 11 7 chr12 40853567 40853846 -102932609 + AluJb SINE Alu 12 291 -21 231 232 281 18 chr12 40854210 40854359 -102932096 - MIR SINE MIR -52 210 40 2378 76 0 3 chr12 40854572 40854873 -102931582 + AluY SINE Alu 1 300 -11 2003 146 23 0 chr12 40854897 40855198 -102931257 + AluJo SINE Alu 1 308 -4 546 181 0 0 chr12 40855346 40855440 -102931015 - U6 snRNA snRNA -11 96 3 22 35 0 0 chr12 40855477 40855506 -102930949 + AT_rich Low_complexity Low_complexity 1 29 0 1002 182 56 0 chr12 40856421 40856619 -102929836 - MER3 DNA MER1_type 0 209 1 2182 108 0 0 chr12 40857246 40857543 -102928912 - AluY SINE Alu -14 297 1 1612 178 14 20 chr12 40857593 40857886 -102928569 - AluJb SINE Alu -14 298 8 1376 61 0 0 chr12 40858073 40858236 -102928219 + AluSg/x SINE Alu 134 296 -16 438 167 11 0 chr12 40858240 40858330 -102928125 + L1 LINE L1 4197 4287 -1859 304 277 96 0 chr12 40858345 40858428 -102928027 + L1MC4 LINE L1 6613 6703 -1339 4496 160 76 19 chr12 40858433 40859007 -102927448 + L1 LINE L1 4226 4766 -1380 1314 71 0 0 chr12 40859007 40859175 -102927280 + L1PA5 LINE L1 5984 6151 -3 4496 160 76 19 chr12 40859175 40859645 -102926810 + L1 LINE L1 4766 5329 -817 947 131 42 0 chr12 40859647 40859815 -102926640 + L1PA16 LINE L1 5865 6039 -127 2264 97 0 13 chr12 40859816 40860124 -102926331 + AluSc SINE Alu 1 304 -5 1814 110 0 26 chr12 40860133 40860397 -102926058 + AluSx SINE Alu 5 261 -51 917 48 0 0 chr12 40860398 40860501 -102925954 + AluY SINE Alu 67 169 -142 736 278 244 14 chr12 40860702 40861116 -102925339 + L2 LINE L2 2805 3313 0 1570 188 3 31 chr12 40861505 40861836 -102924619 - AluSx SINE Alu 0 323 1 1227 149 40 0 chr12 40862535 40862757 -102923698 + MER46A DNA MER2_type 6 236 0 225 294 15 0 chr12 40863736 40863804 -102922651 + CT-rich Low_complexity Low_complexity 2 70 0 972 98 84 107 chr12 40863834 40864049 -102922406 - Tigger7 DNA MER2_type 0 2491 2282 291 175 0 0 chr12 40864049 40864106 -102922349 - Tigger7 DNA MER2_type -293 440 384 1447 138 4 4 chr12 40864116 40864341 -102922114 - AluSg/x SINE Alu -3 309 85 1766 180 83 11 chr12 40864341 40864703 -102921752 - Tigger7 DNA MER2_type -2097 390 3 21 0 0 0 chr12 40865118 40865139 -102921316 + AT_rich Low_complexity Low_complexity 1 21 0 2372 77 0 0 chr12 40865140 40865427 -102921028 - AluSx SINE Alu -25 287 1 1811 160 40 13 chr12 40865651 40865951 -102920504 - AluJo SINE Alu -4 308 1 200 297 31 0 chr12 40865960 40866024 -102920431 + L2 LINE L2 2661 2726 -588 767 198 65 128 chr12 40866145 40866498 -102919957 - L2 LINE L2 -9 3304 2974 280 321 111 42 chr12 40866521 40866711 -102919744 + L2 LINE L2 2882 3084 -188 323 256 192 26 chr12 40866981 40867137 -102919318 + MIR SINE MIR 32 213 -49 328 343 39 17 chr12 40867390 40867568 -102918887 + L2 LINE L2 2828 3009 -263 2340 112 0 0 chr12 40867578 40867890 -102918565 - AluSx SINE Alu 0 312 1 304 240 10 96 chr12 40867991 40868095 -102918360 + L2 LINE L2 3219 3313 0 236 214 0 114 chr12 40868560 40868586 -102917869 - L2 LINE L2 0 3313 3286 2026 95 20 46 chr12 40868586 40868890 -102917565 + AluSx SINE Alu 1 296 -16 236 214 0 114 chr12 40868890 40868933 -102917522 - L2 LINE L2 -27 3286 3252 881 146 8 0 chr12 40868939 40869069 -102917386 - FLAM_C SINE Alu -2 131 1 191 225 0 25 chr12 40869073 40869113 -102917342 - MIR SINE MIR -154 54 16 2393 100 0 0 chr12 40869949 40870249 -102916206 + AluSx SINE Alu 1 300 -12 850 181 0 0 chr12 40870758 40870885 -102915570 + FLAM_C SINE Alu 1 127 -16 375 227 0 0 chr12 40871357 40871432 -102915023 + Tigger5 DNA MER2_type 2 76 -2247 320 218 0 0 chr12 40871441 40871496 -102914959 + Tigger5 DNA MER2_type 2267 2321 -2 2243 106 0 0 chr12 40871784 40872067 -102914388 + AluSx SINE Alu 1 283 -29 205 256 0 0 chr12 40873125 40873168 -102913287 + MER5A DNA MER1_type 7 49 -140 199 194 179 30 chr12 40873200 40873267 -102913188 - MER5B DNA MER1_type -101 77 1 21 0 0 0 chr12 40873555 40873576 -102912879 + AT_rich Low_complexity Low_complexity 1 21 0 573 289 72 24 chr12 40873896 40874104 -102912351 - MIR SINE MIR 0 262 45 189 256 0 0 chr12 40874963 40875002 -102911453 - L2 LINE L2 -89 3224 3186 1728 201 0 10 chr12 40875053 40875352 -102911103 + AluJo SINE Alu 1 296 -16 656 208 14 35 chr12 40876015 40876159 -102910296 + FRAM SINE Alu 2 142 -34 301 224 0 0 chr12 40876294 40876343 -102910112 + L3 LINE CR1 1518 1566 -11 478 264 75 6 chr12 40876493 40876667 -102909788 + L1MEc LINE L1 37 222 -6174 3888 240 112 23 chr12 40876711 40878435 -102908020 + L1MEc LINE L1 396 2272 -4124 471 97 70 70 chr12 40878438 40878515 -102907940 - MER33 DNA MER1_type -2261 363 284 2412 106 3 0 chr12 40878515 40878826 -102907629 + AluSx SINE Alu 1 312 0 471 97 70 70 chr12 40878826 40878862 -102907593 - MER33 DNA MER1_type -2339 285 250 1736 134 62 11 chr12 40878864 40879140 -102907315 + AluSx SINE Alu 1 290 -22 237 126 82 7 chr12 40879140 40879231 -102907224 + (TA)n Simple_repeat Simple_repeat 1 107 -38 2250 107 0 0 chr12 40879231 40879520 -102906935 + AluSx SINE Alu 1 289 -23 237 126 82 7 chr12 40879520 40879563 -102906892 + (TA)n Simple_repeat Simple_repeat 107 145 0 407 87 99 0 chr12 40879585 40879746 -102906709 + (TA)n Simple_repeat Simple_repeat 2 178 0 204 85 127 0 chr12 40879765 40879883 -102906572 + (TA)n Simple_repeat Simple_repeat 2 134 0 205 217 18 60 chr12 40880091 40880257 -102906198 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 * 369 146 45 62 chr12 40880166 40880344 -102906111 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 21 0 0 0 chr12 40880360 40880381 -102906074 + AT_rich Low_complexity Low_complexity 1 21 0 396 124 72 28 chr12 40880381 40880778 -102905677 + (TA)n Simple_repeat Simple_repeat 1 414 0 729 176 123 34 chr12 40880793 40880997 -102905458 - MER33 DNA MER1_type -102 222 1 234 191 48 0 chr12 40881661 40881724 -102904731 + (TA)n Simple_repeat Simple_repeat 2 67 0 1211 206 116 30 chr12 40881727 40881777 -102904678 + L1MEc LINE L1 2245 2289 -3926 2281 107 0 0 chr12 40881777 40882076 -102904379 - AluSq SINE Alu -14 299 1 1211 206 116 30 chr12 40882076 40882432 -102904023 + L1MEc LINE L1 2289 2686 -3529 1910 152 13 19 chr12 40883080 40883390 -102903065 - AluJo SINE Alu -4 308 1 231 338 149 15 chr12 40887708 40887909 -102898546 + L3b LINE CR1 1273 1500 -83 546 259 36 7 chr12 40888826 40888965 -102897490 - MIR3 SINE MIR -38 170 28 300 70 0 0 chr12 40891700 40891743 -102894712 + (CA)n Simple_repeat Simple_repeat 2 44 0 387 105 0 0 chr12 40892178 40892235 -102894220 + (TA)n Simple_repeat Simple_repeat 1 57 0 231 239 0 0 chr12 40892915 40892982 -102893473 + CT-rich Low_complexity Low_complexity 2 68 0 224 322 56 11 chr12 40894823 40894913 -102891542 + L3 LINE CR1 1478 1571 -6 721 111 0 0 chr12 40895520 40895619 -102890836 + AluJ/FLAM SINE Alu 1 99 -213 22 0 0 0 chr12 40895620 40895642 -102890813 + AT_rich Low_complexity Low_complexity 1 22 0 244 138 0 77 chr12 40896357 40896422 -102890033 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 492 294 15 0 chr12 40897287 40897423 -102889032 + L2 LINE L2 2820 2957 -356 1100 118 210 0 chr12 40897523 40897718 -102888737 - MER46A DNA MER2_type 0 236 1 694 246 56 18 chr12 40897999 40898217 -102888238 - MIR SINE MIR -1 261 40 295 154 0 19 chr12 40899979 40900031 -102886424 - L2 LINE L2 0 3313 3263 200 292 0 0 chr12 40900455 40900503 -102885952 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 406 287 57 0 chr12 40901887 40902009 -102884446 + MIR SINE MIR 19 147 -61 499 243 192 51 chr12 40902477 40902691 -102883764 - MIR SINE MIR 0 262 19 24 32 0 0 chr12 40903289 40903320 -102883135 + AT_rich Low_complexity Low_complexity 1 31 0 358 309 81 15 chr12 40904229 40904365 -102882090 + MIR SINE MIR 6 150 -112 298 297 11 11 chr12 40905142 40905233 -102881222 - MIR3 SINE MIR 0 208 118 260 237 107 61 chr12 40905309 40905440 -102881015 - L3 LINE CR1 -95 1482 1346 313 267 61 53 chr12 40905613 40905744 -102880711 + MIR SINE MIR 25 156 -106 399 354 6 24 chr12 40905889 40906053 -102880402 - MIR SINE MIR -78 184 24 220 293 24 0 chr12 40907134 40907216 -102879239 - MIR SINE MIR -5 257 174 241 229 66 0 chr12 40907264 40907325 -102879130 - L2 LINE L2 -22 3291 3227 293 213 43 9 chr12 40907367 40907469 -102878986 - MIR SINE MIR -63 145 89 2499 74 0 0 chr12 40908080 40908376 -102878079 - AluSc SINE Alu -13 296 1 191 344 120 16 chr12 40908490 40908615 -102877840 + MIR SINE MIR 105 242 -20 461 291 0 33 chr12 40909891 40910042 -102876413 - MIR SINE MIR -71 191 46 249 347 113 33 chr12 40911350 40911563 -102874892 - MIR SINE MIR -12 250 21 2025 125 42 0 chr12 40912145 40912433 -102874022 + AluSx SINE Alu 6 305 -7 619 178 6 77 chr12 40913979 40914148 -102872307 - L1MC5 LINE L1 -73 7888 7732 231 125 0 0 chr12 40914940 40914980 -102871475 + (T)n Simple_repeat Simple_repeat 1 40 0 1933 139 0 0 chr12 40915299 40915565 -102870890 - AluSx SINE Alu -46 266 1 475 318 108 47 chr12 40915565 40915861 -102870594 + L1MC4a LINE L1 4892 5205 -941 2385 97 0 3 chr12 40915866 40916174 -102870281 + AluSq SINE Alu 1 307 -6 1203 254 72 84 chr12 40916236 40916914 -102869541 + L1MC4a LINE L1 5267 5936 -1872 1864 167 7 10 chr12 40917083 40917382 -102869073 - AluJo SINE Alu -14 298 1 26 0 0 0 chr12 40917418 40917444 -102869011 + AT_rich Low_complexity Low_complexity 1 26 0 212 296 0 0 chr12 40917867 40917921 -102868534 + GA-rich Low_complexity Low_complexity 1 54 0 180 273 55 64 chr12 40918465 40918575 -102867880 + MIR3 SINE MIR 12 120 -88 993 165 10 5 chr12 40918582 40918776 -102867679 + MER96B DNA MER1_type? 42 236 -181 220 352 0 11 chr12 40918782 40918873 -102867582 + MIR3 SINE MIR 117 206 -2 863 197 17 17 chr12 40920247 40920425 -102866030 - MER5B DNA MER1_type 0 178 1 482 133 9 115 chr12 40920490 40920535 -102865920 - MER5A DNA MER1_type -80 109 61 2386 87 0 10 chr12 40920535 40920834 -102865621 - AluSg SINE Alu -14 296 1 482 133 9 115 chr12 40920834 40920901 -102865554 - MER5A DNA MER1_type -128 61 9 747 245 39 15 chr12 40920914 40921118 -102865337 - MER3 DNA MER1_type 0 209 1 436 321 8 8 chr12 40921979 40922113 -102864342 - MIR SINE MIR -59 149 16 842 150 0 0 chr12 40922415 40922548 -102863907 + FLAM_C SINE Alu 1 133 0 1905 143 9 40 chr12 40923228 40923550 -102862905 - AluJo SINE Alu 0 312 1 529 301 33 0 chr12 40924337 40924520 -102861935 - MIR SINE MIR -3 259 71 2433 55 28 7 chr12 40924622 40924913 -102861542 - AluSp SINE Alu -16 297 1 195 246 115 0 chr12 40925446 40925507 -102860948 + L2 LINE L2 3205 3272 0 292 203 0 0 chr12 40926549 40926608 -102859847 - MER5A DNA MER1_type -118 71 13 219 69 0 0 chr12 40926739 40926768 -102859687 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 224 111 0 67 chr12 40927596 40927641 -102858814 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 713 52 21 0 chr12 40928393 40928490 -102857965 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 1975 128 25 0 chr12 40928492 40928766 -102857689 - AluSx SINE Alu -27 285 5 25 0 0 0 chr12 40929709 40929734 -102856721 + AT_rich Low_complexity Low_complexity 1 25 0 318 50 0 0 chr12 40933239 40933279 -102853176 + (TG)n Simple_repeat Simple_repeat 2 41 0 182 178 22 22 chr12 40933908 40933953 -102852502 - MER5B DNA MER1_type -13 165 121 207 261 31 0 chr12 40936380 40936445 -102850010 + CT-rich Low_complexity Low_complexity 2 68 0 21 0 0 0 chr12 40939684 40939705 -102846750 + AT_rich Low_complexity Low_complexity 1 21 0 270 227 68 23 chr12 40943732 40943820 -102842635 - MIR SINE MIR -28 234 143 436 271 16 8 chr12 40944175 40944297 -102842158 - MIR SINE MIR -43 219 97 2116 112 13 20 chr12 40946274 40946577 -102839878 + AluSx SINE Alu 1 301 -11 341 323 89 50 chr12 40964574 40965007 -102821448 + L1MCa LINE L1 1906 6292 -109 * 348 275 0 22 chr12 40964989 40965080 -102821375 - L1MC4 LINE L1 -1340 6702 6614 203 245 0 19 chr12 40966308 40966361 -102820094 + L2 LINE L2 3262 3313 0 267 200 18 0 chr12 40968099 40968154 -102818301 - L2 LINE L2 -8 3305 3250 1231 174 19 14 chr12 40968656 40968868 -102817587 + MER20 DNA MER1_type 7 219 0 407 357 70 0 chr12 40971511 40971668 -102814787 + MIR3 SINE MIR 34 201 -7 3250 168 31 72 chr12 40973353 40974072 -102812383 + LTR8 LTR ERV1 3 691 0 2136 99 0 0 chr12 40974361 40974675 -102811780 - AluSx SINE Alu 0 314 1 397 192 90 130 chr12 40975074 40975251 -102811204 + MER39 LTR ERV1 1 170 -474 719 156 0 0 chr12 40975253 40975362 -102811093 - AluJo SINE Alu -13 299 191 904 78 14 57 chr12 40975362 40975503 -102810952 + MER4B LTR ERV1 1 135 -475 2546 114 8 31 chr12 40975507 40976105 -102810350 + MER4A LTR ERV1 1 655 -9 1143 180 0 0 chr12 40976116 40976310 -102810145 - AluJo SINE Alu -118 194 1 824 201 36 27 chr12 40976331 40976569 -102809886 + LTR29 LTR ERV1 185 608 -179 1730 138 235 0 chr12 40976575 40976915 -102809540 - MSTA LTR MaLR -8 420 1 9690 117 11 64 chr12 40976915 40977038 -102809417 - MSTA-int LTR MaLR 0 1580 1452 4310 75 4 12 chr12 40977038 40977154 -102809301 - MER41A LTR ERV1 0 554 438 2158 83 0 0 chr12 40977154 40977431 -102809024 + AluY SINE Alu 35 311 0 4310 75 4 12 chr12 40977431 40977873 -102808582 - MER41A LTR ERV1 -116 438 1 9690 117 11 64 chr12 40977873 40978066 -102808389 - MSTA-int LTR MaLR -128 1452 1250 1602 170 3 48 chr12 40978066 40978377 -102808078 - AluJb SINE Alu -15 297 1 9690 117 11 64 chr12 40978377 40979163 -102807292 - MSTA-int LTR MaLR -330 1250 591 2006 123 0 0 chr12 40979163 40979440 -102807015 - AluSq SINE Alu -35 278 2 9690 117 11 64 chr12 40979440 40980000 -102806455 - MSTA-int LTR MaLR -989 591 3 1722 135 239 9 chr12 40980002 40980349 -102806106 - MSTA LTR MaLR 0 428 2 487 143 32 117 chr12 40980349 40980503 -102805952 + LTR49 LTR ERV1 419 559 -36 1889 163 33 84 chr12 40980511 40981055 -102805400 + LTR49-int LTR ERV1 1 1425 -4521 249 195 0 0 chr12 40981060 40981101 -102805354 + LTR48B LTR ERV1 604 644 0 1055 244 77 34 chr12 40981133 40981575 -102804880 + MLT1J LTR MaLR 44 504 -7 209 256 0 0 chr12 40982216 40982259 -102804196 + L2 LINE L2 3265 3307 -6 2615 162 18 11 chr12 40983522 40983980 -102802475 + LTR32 LTR ERVL 11 471 0 21 0 0 0 chr12 40984729 40984750 -102801705 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr12 40985807 40985836 -102800619 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 516 271 5 85 chr12 40985837 40986025 -102800430 - MIR SINE MIR -13 249 77 364 272 150 40 chr12 40986551 40986724 -102799731 + L2 LINE L2 3077 3268 -4 852 166 0 14 chr12 40987019 40987164 -102799291 + FAM SINE Alu 16 158 -27 306 0 0 0 chr12 40987166 40987200 -102799255 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 206 203 6 6 chr12 40987439 40987495 -102798960 - MIR SINE MIR -76 132 96 184 327 19 37 chr12 40987991 40988098 -102798357 + L2 LINE L2 2951 3055 -217 763 233 35 120 chr12 40988206 40988298 -102798157 + MIR SINE MIR 4 102 -160 1718 142 3 31 chr12 40988298 40988587 -102797868 + AluJb SINE Alu 1 281 -31 763 233 35 120 chr12 40988587 40988777 -102797678 + MIR SINE MIR 102 262 0 186 243 0 54 chr12 40988867 40988941 -102797514 + L2 LINE L2 3201 3270 -2 318 317 75 44 chr12 40990806 40991014 -102795441 - L1ME3A LINE L1 0 6170 5955 469 270 142 0 chr12 40991029 40991177 -102795278 - MIR SINE MIR -36 226 58 239 345 12 0 chr12 41041195 41041279 -102745176 - L1ME3A LINE L1 -485 5636 5552 2475 88 0 13 chr12 41041520 41041827 -102744628 + AluSx SINE Alu 1 303 -9 516 288 77 18 chr12 41041870 41042092 -102744363 + MIR SINE MIR 4 238 -24 991 134 5 62 chr12 41042668 41042862 -102743593 - MLT1D LTR MaLR 0 505 323 1517 105 0 59 chr12 41042864 41043150 -102743305 - AluSx SINE Alu -15 297 29 274 149 0 0 chr12 41045414 41045461 -102740994 - FLAM SINE Alu -27 106 60 1067 145 42 5 chr12 41046297 41046490 -102739965 - AluY SINE Alu -30 281 82 268 99 70 0 chr12 41049314 41049385 -102737070 + (TA)n Simple_repeat Simple_repeat 1 76 0 198 0 0 0 chr12 41049880 41049902 -102736553 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 199 173 39 39 chr12 41050487 41050539 -102735916 + MIR SINE MIR 72 123 -139 221 169 34 34 chr12 41050549 41050608 -102735847 - MIR SINE MIR -77 131 73 1711 186 12 6 chr12 41050654 41050993 -102735462 - L1MA5 LINE L1 0 6300 5960 185 219 0 24 chr12 41050995 41051036 -102735419 + MIR3 SINE MIR 117 156 -52 2607 90 3 0 chr12 41051380 41051734 -102734721 + THE1A LTR MaLR 1 355 0 285 243 54 0 chr12 41052218 41052292 -102734163 + MER91B DNA MER1_type 56 133 -57 2371 92 0 32 chr12 41052366 41052682 -102733773 - AluSq SINE Alu -7 306 1 511 340 94 4 chr12 41052765 41053021 -102733434 + L3 LINE CR1 1288 1566 -11 968 159 13 0 chr12 41053862 41054013 -102732442 + FRAM SINE Alu 11 163 -13 187 233 33 67 chr12 41054043 41054103 -102732352 - L3 LINE CR1 -2 1575 1518 308 314 189 6 chr12 41055027 41055202 -102731253 + MIR SINE MIR 29 235 -27 495 336 76 9 chr12 41055246 41055457 -102730998 + MIR SINE MIR 28 252 -10 231 114 0 0 chr12 41056059 41056103 -102730352 + (TG)n Simple_repeat Simple_repeat 2 45 0 1781 158 47 99 chr12 41058205 41058699 -102727756 - L1PA16 LINE L1 0 6166 5699 289 141 50 0 chr12 41058793 41058892 -102727563 + (TA)n Simple_repeat Simple_repeat 2 105 0 523 113 0 0 chr12 41058953 41059033 -102727422 + MADE1 DNA Mariner 1 80 0 234 247 14 41 chr12 41059263 41059336 -102727119 + MIR SINE MIR 127 197 -65 188 229 49 16 chr12 41060337 41060398 -102726057 - MIR SINE MIR -190 72 10 817 151 0 0 chr12 41062482 41062608 -102723847 - FLAM_C SINE Alu -7 126 1 240 86 0 0 chr12 41063457 41063492 -102722963 + (CA)n Simple_repeat Simple_repeat 2 36 0 2183 200 35 11 chr12 41063492 41064070 -102722385 - MER82 DNA MER2_type -2 651 2 185 296 45 45 chr12 41064255 41064343 -102722112 - L2 LINE L2 -28 3285 3198 475 236 103 46 chr12 41065962 41065982 -102720473 + MIR SINE MIR 6 23 -239 1763 158 29 45 chr12 41065982 41066051 -102720404 - THE1C LTR MaLR 0 375 306 2725 23 7 3 chr12 41066051 41066360 -102720095 + AluY SINE Alu 1 310 -1 1763 158 29 45 chr12 41066360 41066671 -102719784 - THE1C LTR MaLR -69 306 1 475 236 103 46 chr12 41066671 41066845 -102719610 + MIR SINE MIR 23 211 -51 415 221 184 0 chr12 41067376 41067512 -102718943 - MIR SINE MIR -14 248 88 195 42 0 0 chr12 41067779 41067803 -102718652 + (TG)n Simple_repeat Simple_repeat 1 24 0 421 287 98 67 chr12 41067812 41067947 -102718508 - L1MC4a LINE L1 -1908 5900 5771 2229 129 3 3 chr12 41067947 41068433 -102718022 + AluSx SINE Alu 1 312 0 421 287 98 67 chr12 41068433 41068625 -102717830 - L1MC4a LINE L1 -2037 5771 5563 701 210 0 0 chr12 41068757 41068900 -102717555 - L1MA9 LINE L1 0 6312 6170 1841 176 0 19 chr12 41069791 41070103 -102716352 - AluJb SINE Alu -6 306 1 2644 56 0 0 chr12 41070152 41070457 -102715998 - AluY SINE Alu -6 305 1 210 366 12 0 chr12 41071642 41071724 -102714731 + MIR3 SINE MIR 111 193 -15 198 0 0 0 chr12 41072280 41072302 -102714153 + (CA)n Simple_repeat Simple_repeat 1 22 0 2308 132 0 0 chr12 41072328 41072638 -102713817 - AluSg SINE Alu 0 310 1 2032 138 0 21 chr12 41072685 41073004 -102713451 - AluSx SINE Alu 0 313 1 2274 72 43 0 chr12 41073317 41073596 -102712859 + AluY SINE Alu 1 291 -20 2473 63 7 10 chr12 41073697 41073997 -102712458 + AluY SINE Alu 1 299 -12 1868 165 0 13 chr12 41074003 41074312 -102712143 + AluJo SINE Alu 5 309 -3 323 236 34 34 chr12 41076417 41076506 -102709949 - MIR SINE MIR -84 124 36 277 302 109 40 chr12 41077134 41077336 -102709119 - MIR SINE MIR -16 246 31 323 185 46 0 chr12 41077628 41077693 -102708762 + L2 LINE L2 3205 3272 0 984 259 4 17 chr12 41078565 41078804 -102707651 + MIR SINE MIR 1 236 -26 2192 118 6 10 chr12 41079446 41079759 -102706696 + AluSx SINE Alu 1 312 0 778 81 16 16 chr12 41079760 41079884 -102706571 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 186 296 0 0 chr12 41079902 41079956 -102706499 - L2 LINE L2 -86 3227 3174 204 346 57 64 chr12 41080061 41080359 -102706096 - L2 LINE L2 -163 3109 2814 235 258 247 0 chr12 41081510 41081603 -102704852 - MIR SINE MIR -6 256 141 201 39 0 0 chr12 41081614 41081640 -102704815 + (CA)n Simple_repeat Simple_repeat 2 27 0 355 281 75 50 chr12 41081659 41081819 -102704636 - MIR3 SINE MIR -29 179 16 210 286 43 23 chr12 41082743 41082850 -102703605 - MIR SINE MIR -92 116 10 568 298 130 19 chr12 41083064 41083604 -102702851 - L1ME4a LINE L1 -138 5983 5384 2289 106 0 16 chr12 41084167 41084340 -102702115 - AluSx SINE Alu -5 307 133 288 0 0 0 chr12 41084340 41084372 -102702083 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2188 113 0 0 chr12 41084372 41084664 -102701791 - AluSg SINE Alu -18 292 1 2289 106 0 16 chr12 41084664 41084801 -102701654 - AluSx SINE Alu -177 135 1 332 225 50 0 chr12 41084808 41084888 -102701567 + MER5A DNA MER1_type 55 138 -51 199 278 17 78 chr12 41084936 41085051 -102701404 - MIR3 SINE MIR -50 158 51 1960 142 10 17 chr12 41085288 41085590 -102700865 + AluJo SINE Alu 1 300 -12 1253 109 12 0 chr12 41085774 41085939 -102700516 - AluSp SINE Alu -13 300 134 2203 116 3 10 chr12 41085939 41086241 -102700214 - AluSq SINE Alu -13 300 1 2513 63 10 3 chr12 41086245 41086548 -102699907 - AluY SINE Alu -6 305 1 552 270 120 63 chr12 41089267 41089561 -102696894 + L1ME4a LINE L1 5672 5999 -122 2130 112 10 13 chr12 41089561 41089873 -102696582 + AluSx SINE Alu 2 312 0 552 270 120 63 chr12 41089873 41090004 -102696451 + L1ME4a LINE L1 5999 6121 0 209 240 20 0 chr12 41090046 41090096 -102696359 + L3 LINE CR1 1126 1176 -401 2504 90 3 0 chr12 41090846 41091156 -102695299 + AluSx SINE Alu 1 311 -1 1778 185 0 32 chr12 41091381 41091523 -102694932 + AluJo SINE Alu 1 146 -166 2331 65 0 11 chr12 41091523 41091802 -102694653 + AluY SINE Alu 14 289 -22 1778 185 0 32 chr12 41091802 41091972 -102694483 + AluJo SINE Alu 146 303 -9 1042 191 0 0 chr12 41091972 41092134 -102694321 + FRAM SINE Alu 1 159 -17 619 299 80 36 chr12 41094036 41094401 -102692054 - L2 LINE L2 0 3313 2933 194 315 11 22 chr12 41094479 41094568 -102691887 - L2 LINE L2 -508 2806 2719 199 272 161 0 chr12 41096858 41096939 -102689516 - MIR SINE MIR -56 152 59 2125 91 14 47 chr12 41096940 41097237 -102689218 + AluSp SINE Alu 1 287 -26 357 336 7 29 chr12 41098101 41098241 -102688214 - MIR SINE MIR 0 262 126 528 252 161 0 chr12 41099187 41099342 -102687113 - MER3 DNA MER1_type 0 209 30 2299 105 0 0 chr12 41099368 41099664 -102686791 - AluSx SINE Alu 0 312 17 231 179 0 0 chr12 41099664 41099703 -102686752 - MER3 DNA MER1_type -170 39 1 1167 252 24 45 chr12 41100389 41100722 -102685733 - LTR16A LTR ERVL 0 450 125 282 293 61 10 chr12 41101342 41101441 -102685014 - L2 LINE L2 -47 3225 3122 804 219 70 5 chr12 41101504 41101705 -102684750 + MIR SINE MIR 41 254 -8 1877 176 43 14 chr12 41102412 41102827 -102683628 - Charlie1b DNA MER1_type 0 523 97 402 21 0 0 chr12 41102989 41103036 -102683419 + (TG)n Simple_repeat Simple_repeat 1 47 0 1500 148 65 47 chr12 41103057 41103334 -102683121 - AluJo SINE Alu -30 282 1 437 276 214 8 chr12 41103343 41103600 -102682855 - L3 LINE CR1 -731 846 537 1819 174 0 19 chr12 41104160 41104471 -102681984 + AluJb SINE Alu 1 305 -7 333 325 58 0 chr12 41105180 41105300 -102681155 + MIR SINE MIR 13 139 -123 454 326 124 13 chr12 41105365 41105598 -102680857 + MIR SINE MIR 4 262 0 282 219 0 0 chr12 41106531 41106595 -102679860 + (CA)n Simple_repeat Simple_repeat 2 65 0 363 310 31 70 chr12 41107913 41108200 -102678255 - L1ME4a LINE L1 -294 5827 5552 2154 103 30 0 chr12 41108441 41108741 -102677714 + AluSx SINE Alu 1 309 -3 298 304 151 42 chr12 41108778 41109163 -102677292 + L2 LINE L2 1986 2412 -902 1804 132 28 19 chr12 41109527 41109846 -102676609 + MER33 DNA MER1_type 2 323 -1 561 284 77 18 chr12 41111269 41111491 -102674964 - MIR SINE MIR -24 238 4 2118 136 0 0 chr12 41111530 41111831 -102674624 - AluSx SINE Alu -5 307 7 2257 97 0 7 chr12 41111866 41112165 -102674290 + AluSq SINE Alu 1 297 -16 304 281 22 0 chr12 41112560 41112649 -102673806 + L2 LINE L2 3218 3308 -5 441 294 27 7 chr12 41113197 41113343 -102673112 + MIR3 SINE MIR 11 159 -49 300 288 108 65 chr12 41113344 41113483 -102672972 - MER5A DNA MER1_type 0 189 45 2059 119 37 0 chr12 41113484 41113779 -102672676 - AluSx SINE Alu -6 306 1 203 88 29 0 chr12 41113940 41113974 -102672481 + (TTA)n Simple_repeat Simple_repeat 2 36 0 472 235 15 23 chr12 41114575 41114707 -102671748 - MIR3 SINE MIR 0 208 78 189 0 0 0 chr12 41114802 41114823 -102671632 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 455 291 126 6 chr12 41114937 41115112 -102671343 - MIR SINE MIR -55 207 12 373 289 278 5 chr12 41115821 41116008 -102670447 + MIR SINE MIR 24 261 -1 766 152 0 34 chr12 41116010 41116188 -102670267 + CT-rich Low_complexity Low_complexity 1 172 0 304 65 22 0 chr12 41116531 41116577 -102669878 + L2 LINE L2 3267 3313 0 288 320 179 0 chr12 41116577 41116733 -102669722 + MIR SINE MIR 63 246 -16 205 290 48 16 chr12 41117875 41117937 -102668518 - L2 LINE L2 -185 3087 3024 303 93 0 0 chr12 41117958 41118001 -102668454 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 241 288 0 38 chr12 41118965 41119045 -102667410 + G-rich Low_complexity Low_complexity 4 80 0 21 36 0 0 chr12 41119864 41119892 -102666563 + GC_rich Low_complexity Low_complexity 1 28 0 269 190 27 76 chr12 41119966 41120150 -102666305 + (CCCGG)n Simple_repeat Simple_repeat 1 175 0 213 216 0 59 chr12 41121594 41121645 -102664810 + MIR SINE MIR 101 148 -60 284 264 24 57 chr12 41121978 41122114 -102664341 - MIR3 SINE MIR -86 122 6 475 212 18 166 chr12 41123447 41123520 -102662935 + MER5A DNA MER1_type 5 87 -102 2240 81 20 3 chr12 41123520 41123818 -102662637 + AluSx SINE Alu 1 303 -9 475 212 18 166 chr12 41123818 41123837 -102662618 + MER5A DNA MER1_type 87 107 -82 1683 138 12 0 chr12 41123837 41124091 -102662364 + AluSx SINE Alu 37 293 -19 475 212 18 166 chr12 41124091 41124214 -102662241 + MER5A DNA MER1_type 107 189 0 303 345 35 7 chr12 41124216 41124361 -102662094 - MIR3 SINE MIR -50 158 10 664 263 44 77 chr12 41124597 41124894 -102661561 - L2 LINE L2 -3 3310 3024 626 323 73 1 chr12 41127052 41127299 -102659156 + MIR SINE MIR 1 262 0 436 273 196 14 chr12 41128054 41128274 -102658181 - L1ME4a LINE L1 -11 6110 5851 462 61 0 0 chr12 41128841 41128907 -102657548 + (GA)n Simple_repeat Simple_repeat 1 66 0 606 225 22 73 chr12 41129349 41129466 -102656989 + MIR SINE MIR 46 153 -109 2172 125 3 0 chr12 41129466 41129777 -102656678 + AluSx SINE Alu 1 312 0 606 225 22 73 chr12 41129777 41129837 -102656618 + MIR SINE MIR 153 214 -48 2152 122 0 0 chr12 41129841 41130145 -102656310 + AluSx SINE Alu 1 304 -8 195 290 0 48 chr12 41130180 41130242 -102656213 + MIR SINE MIR 204 262 0 29 0 0 0 chr12 41130242 41130271 -102656184 + AT_rich Low_complexity Low_complexity 1 29 0 989 265 8 8 chr12 41132155 41132389 -102654066 + MIR SINE MIR 4 237 -25 2175 132 0 0 chr12 41132472 41132782 -102653673 + AluSx SINE Alu 1 310 -2 2043 111 3 40 chr12 41132993 41133317 -102653138 - AluSx SINE Alu 0 312 1 289 365 73 7 chr12 41133317 41133454 -102653001 - MIR SINE MIR -96 166 21 298 294 108 0 chr12 41133911 41134013 -102652442 + MIR3 SINE MIR 61 173 -35 1250 176 92 0 chr12 41134365 41134439 -102652016 + AluJo SINE Alu 36 102 -210 183 114 0 0 chr12 41134439 41134474 -102651981 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1250 176 92 0 chr12 41134474 41134649 -102651806 + AluJo SINE Alu 102 308 -4 186 380 76 0 chr12 41135258 41135350 -102651105 + MIR SINE MIR 25 123 -85 194 377 26 0 chr12 41136122 41136199 -102650256 - L2 LINE L2 -213 3059 2981 223 343 37 46 chr12 41137761 41137869 -102648586 - MIR SINE MIR 0 262 156 181 282 13 51 chr12 41138292 41138370 -102648085 - L2 LINE L2 0 3272 3198 510 323 95 36 chr12 41138370 41138707 -102647748 - L2 LINE L2 0 3272 2916 207 321 104 0 chr12 41139293 41139399 -102647056 - MIR3 SINE MIR -3 205 89 304 277 77 19 chr12 41139441 41139587 -102646868 + MIR3 SINE MIR 58 215 -47 209 300 75 0 chr12 41140538 41140618 -102645837 + MIR SINE MIR 114 199 -63 369 0 0 0 chr12 41141815 41141856 -102644599 + (CA)n Simple_repeat Simple_repeat 1 41 0 396 294 184 6 chr12 41142790 41142953 -102643502 + MER91A DNA MER1_type 2 193 -3 2315 103 0 0 chr12 41142988 41143289 -102643166 + AluSx SINE Alu 1 301 -11 282 125 0 0 chr12 41145116 41145164 -102641291 + (CA)n Simple_repeat Simple_repeat 1 48 0 1908 172 29 96 chr12 41145353 41145771 -102640684 - MLT1B LTR MaLR 0 390 1 295 317 30 10 chr12 41146503 41146604 -102639851 - MIR SINE MIR -65 143 41 456 233 136 13 chr12 41146649 41146877 -102639578 - L1ME4a LINE L1 -7 6114 5859 244 319 165 5 chr12 41146916 41147104 -102639351 - L1ME4a LINE L1 -315 5806 5589 239 114 23 0 chr12 41149201 41149245 -102637210 + CT-rich Low_complexity Low_complexity 1 45 0 317 321 47 9 chr12 41150548 41150654 -102635801 + MIR SINE MIR 105 214 -48 468 244 225 19 chr12 41150774 41150987 -102635468 - MIR SINE MIR 0 262 6 358 306 20 0 chr12 41151729 41151827 -102634628 + MIR3 SINE MIR 66 165 -43 183 162 0 0 chr12 41152704 41152741 -102633714 + (CA)n Simple_repeat Simple_repeat 1 37 0 372 292 18 18 chr12 41153533 41153646 -102632809 + MIR3 SINE MIR 9 121 -87 238 159 29 0 chr12 41156819 41156888 -102629567 + (TG)n Simple_repeat Simple_repeat 2 72 0 246 273 209 36 chr12 41157333 41157472 -102628983 + MIR3 SINE MIR 34 196 -12 2366 106 0 0 chr12 41158845 41159157 -102627298 + AluSx SINE Alu 1 312 0 1520 102 130 11 chr12 41159729 41160014 -102626441 - MER1B DNA MER1_type -4 335 17 363 335 80 0 chr12 41160279 41160455 -102626000 - MIR SINE MIR -20 242 53 816 216 158 23 chr12 41160716 41161131 -102625324 + Charlie1 DNA MER1_type 36 2751 -10 247 304 51 0 chr12 41162717 41162796 -102623659 + MIR3 SINE MIR 112 194 -14 248 318 58 48 chr12 41164528 41164717 -102621738 - MIR3 SINE MIR -7 201 11 663 263 17 28 chr12 41165248 41165427 -102621028 + MIR SINE MIR 78 254 -8 267 31 0 0 chr12 41165870 41165902 -102620553 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 49 0 0 chr12 41166215 41166256 -102620199 + GC_rich Low_complexity Low_complexity 1 41 0 42 71 0 0 chr12 41166505 41166589 -102619866 + GC_rich Low_complexity Low_complexity 1 84 0 242 324 0 49 chr12 41166635 41166737 -102619718 + MER5A DNA MER1_type 50 146 -43 25 51 0 0 chr12 41166787 41166826 -102619629 + AT_rich Low_complexity Low_complexity 1 39 0 1698 151 7 28 chr12 41167024 41167315 -102619140 - AluJo SINE Alu -19 293 9 1114 141 40 60 chr12 41167568 41167764 -102618691 - MLT1D LTR MaLR 0 505 307 2293 87 0 3 chr12 41167764 41168062 -102618393 - AluSx SINE Alu -15 297 1 1114 141 40 60 chr12 41168062 41168299 -102618156 - MLT1D LTR MaLR -198 307 1 435 271 93 0 chr12 41168299 41168417 -102618038 + L2 LINE L2 3185 3313 0 184 263 20 61 chr12 41168525 41168624 -102617831 + MER5B DNA MER1_type 13 107 -71 262 339 97 10 chr12 41168764 41168956 -102617499 - L2 LINE L2 -276 2996 2782 433 283 188 0 chr12 41169077 41169215 -102617240 + MIR SINE MIR 91 254 -8 789 171 6 0 chr12 41169670 41169828 -102616627 + MER3 DNA MER1_type 9 167 -42 265 165 0 63 chr12 41169847 41169926 -102616529 + MER3 DNA MER1_type 132 205 -4 248 290 40 60 chr12 41169942 41170042 -102616413 + MIR SINE MIR 123 220 -42 572 257 143 50 chr12 41170460 41170760 -102615695 + MLT1J1 LTR MaLR 25 352 -94 1960 60 4 0 chr12 41220764 41220998 -102565457 + AluY SINE Alu 63 297 -14 427 272 110 7 chr12 41222387 41222523 -102563932 + MIR SINE MIR 20 169 -93 372 317 5 43 chr12 41222577 41222763 -102563692 - MIR SINE MIR 0 262 84 707 215 73 49 chr12 41222870 41223075 -102563380 + MER63A DNA MER1_type 1 210 0 820 120 24 0 chr12 41223376 41223501 -102562954 - MLT-int LTR MaLR -120 1615 1488 2299 128 22 35 chr12 41223506 41223874 -102562581 - THE1B LTR MaLR 0 364 2 12251 102 5 4 chr12 41223875 41225453 -102561002 - THE1B-int LTR MaLR 0 1580 1 2399 117 19 35 chr12 41225455 41225823 -102560632 - THE1B LTR MaLR -2 362 1 1506 156 3 62 chr12 41225977 41226265 -102560190 + MLT-int LTR MaLR 1317 1587 -148 928 177 86 65 chr12 41226265 41226497 -102559958 + LTR8A LTR ERV1 489 725 -2 335 219 0 0 chr12 41226587 41226651 -102559804 - MLT-int LTR MaLR -993 742 679 3091 175 128 7 chr12 41226775 41227385 -102559070 - MLT1A2-int LTR MaLR -1050 685 2 1596 171 42 66 chr12 41227385 41227594 -102558861 - MLT1A2 LTR MaLR -2 372 175 2408 89 0 6 chr12 41227594 41227908 -102558547 - AluSq SINE Alu -1 312 1 1596 171 42 66 chr12 41227908 41228078 -102558377 - MLT1A2 LTR MaLR -199 175 2 224 313 100 44 chr12 41228548 41228708 -102557747 + L2 LINE L2 2562 2730 -584 330 331 12 38 chr12 41228885 41229045 -102557410 + L2 LINE L2 3158 3313 0 310 360 15 22 chr12 41229058 41229194 -102557261 + L2 LINE L2 2925 3059 -213 324 0 0 0 chr12 41229207 41229243 -102557212 + (CA)n Simple_repeat Simple_repeat 1 36 0 498 274 206 16 chr12 41229437 41229689 -102556766 + MLT1J2 LTR MaLR 151 450 0 302 267 86 26 chr12 41229731 41229847 -102556608 + L2 LINE L2 3136 3258 -14 705 210 81 27 chr12 41230450 41230636 -102555819 - MLT1A2 LTR MaLR 0 374 179 2767 155 14 2 chr12 41230706 41231132 -102555323 + MSTB1 LTR MaLR 2 432 0 7374 196 83 4 chr12 41231133 41232578 -102553877 + MSTB1-int LTR MaLR 2 1560 -91 299 200 0 0 chr12 41232592 41232642 -102553813 - MLT1A2 LTR MaLR -346 50 1 2466 236 78 0 chr12 41232642 41233181 -102553274 - MLT1A2-int LTR MaLR 0 1735 1155 2288 196 39 83 chr12 41233176 41233741 -102552714 - MLT1A2-int LTR MaLR -841 894 355 * 1018 212 27 46 chr12 41233741 41234000 -102552455 - MLT1A1 LTR MaLR -98 267 14 333 156 294 28 chr12 41235817 41235926 -102550529 + MER53 DNA DNA 51 188 -1 231 309 25 25 chr12 41235929 41236010 -102550445 - MIR SINE MIR -111 97 17 1715 142 158 28 chr12 41237738 41238061 -102548394 + MLT1A1 LTR MaLR 1 365 0 543 264 138 17 chr12 41239860 41240091 -102546364 - MIR SINE MIR 0 262 4 920 269 95 81 chr12 41240135 41240607 -102545848 - L2 LINE L2 0 3313 2835 209 312 0 65 chr12 41240637 41240730 -102545725 + L2 LINE L2 3186 3272 0 261 0 0 0 chr12 41240960 41240989 -102545466 + (TG)n Simple_repeat Simple_repeat 2 30 0 1139 172 0 47 chr12 41241540 41241755 -102544700 + AluJo SINE Alu 87 291 -21 309 295 164 22 chr12 41241844 41242027 -102544428 + MIR SINE MIR 34 242 -20 30725 113 16 59 chr12 41242566 41249006 -102537449 + L1PA8 LINE L1 12 6163 -9 55 0 0 0 chr12 41249025 41249080 -102537375 + AT_rich Low_complexity Low_complexity 1 55 0 320 308 25 138 chr12 41249138 41249538 -102536917 + L2 LINE L2 2914 3268 -4 232 351 44 0 chr12 41249550 41249664 -102536791 + MIR SINE MIR 93 211 -51 1120 318 80 21 chr12 41249767 41250494 -102535961 - L2 LINE L2 -78 3235 2461 1722 178 53 28 chr12 41250504 41250756 -102535699 - MLT1A1 LTR MaLR 0 365 100 2594 126 59 5 chr12 41250756 41251162 -102535293 - MSTA LTR MaLR 0 428 1 1722 178 53 28 chr12 41251162 41251264 -102535191 - MLT1A1 LTR MaLR -265 100 2 216 0 0 0 chr12 41251369 41251393 -102535062 + (TG)n Simple_repeat Simple_repeat 2 25 0 229 65 0 0 chr12 41251401 41251447 -102535008 - LTR66 LTR ERVL -171 439 394 257 98 0 0 chr12 41251493 41251534 -102534921 - LTR66 LTR ERVL -172 438 398 247 273 23 23 chr12 41251534 41251622 -102534833 - L1MC4 LINE L1 -1339 6703 6616 231 267 0 0 chr12 41251639 41251714 -102534741 + (TA)n Simple_repeat Simple_repeat 2 76 0 238 143 0 0 chr12 41251716 41251758 -102534697 - LTR66 LTR ERVL -171 439 398 206 260 0 0 chr12 41251758 41251808 -102534647 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 167 0 0 chr12 41251810 41251852 -102534603 - LTR66 LTR ERVL -171 439 398 192 179 0 0 chr12 41251859 41251898 -102534557 + (TA)n Simple_repeat Simple_repeat 1 39 0 227 191 0 0 chr12 41251898 41251940 -102534515 - LTR66 LTR ERVL -171 439 398 251 289 0 11 chr12 41251967 41252057 -102534398 - L1MC4 LINE L1 -1340 6702 6614 226 318 0 0 chr12 41252066 41252154 -102534301 - L1MC4 LINE L1 -1344 6698 6611 * 254 247 22 22 chr12 41252121 41252210 -102534245 - L1MC4 LINE L1 -1339 6703 6615 385 173 8 31 chr12 41252211 41252338 -102534117 + (TA)n Simple_repeat Simple_repeat 2 125 0 236 153 34 34 chr12 41252361 41252420 -102534035 + L1MC3 LINE L1 6588 6646 -1139 336 287 0 0 chr12 41252423 41252552 -102533903 + (TA)n Simple_repeat Simple_repeat 1 129 0 240 337 0 0 chr12 41252575 41252664 -102533791 + L1MC4 LINE L1 6614 6702 -1340 467 252 6 0 chr12 41252673 41252832 -102533623 + (TA)n Simple_repeat Simple_repeat 2 161 0 225 231 31 0 chr12 41252834 41252899 -102533556 - L1MC3 LINE L1 -1131 6654 6588 * 253 294 47 0 chr12 41252842 41252927 -102533528 + L1MC4 LINE L1 6614 6702 -1340 225 191 0 0 chr12 41252950 41252992 -102533463 + LTR66 LTR ERVL 398 439 -171 526 356 0 6 chr12 41252997 41253177 -102533278 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 228 348 0 11 chr12 41253203 41253295 -102533160 + L1MC4 LINE L1 6613 6703 -1339 252 317 0 0 chr12 41253299 41253422 -102533033 + (TA)n Simple_repeat Simple_repeat 1 123 0 1251 153 38 46 chr12 41254324 41254586 -102531869 - AluJo SINE Alu -52 260 1 1915 146 3 3 chr12 41254627 41254935 -102531520 + AluSq SINE Alu 1 308 -5 345 241 76 93 chr12 41255056 41255357 -102531098 - L1MC5 LINE L1 -249 7712 7418 2668 143 33 21 chr12 41255357 41255778 -102530677 + MSTA LTR MaLR 1 426 -2 345 241 76 93 chr12 41255778 41255886 -102530569 - L1MC5 LINE L1 -543 7418 7310 541 211 110 41 chr12 41255988 41256206 -102530249 - L1MC4 LINE L1 -704 7338 7106 806 123 9 9 chr12 41256220 41256334 -102530121 + AluSg1 SINE Alu 2 115 -194 1401 260 12 2 chr12 41256434 41256841 -102529614 - L1P LINE L1 -2598 3548 3138 389 249 17 23 chr12 41256846 41257019 -102529436 + CT-rich Low_complexity Low_complexity 2 173 0 1586 279 27 13 chr12 41257024 41257086 -102529369 - L1 LINE L1 -2946 3200 3140 1545 165 6 88 chr12 41257086 41257425 -102529030 - AluJo SINE Alu -1 311 1 1586 279 27 13 chr12 41257425 41257999 -102528456 - L1 LINE L1 -3006 3140 2555 363 317 87 12 chr12 41258308 41258469 -102527986 - MIR SINE MIR -37 225 53 192 374 45 13 chr12 41258742 41258897 -102527558 + MIR SINE MIR 47 206 -56 2380 76 0 3 chr12 41259120 41259424 -102527031 + AluY SINE Alu 1 303 -8 270 130 58 43 chr12 41260271 41260340 -102526115 - MLT1K LTR MaLR -8 580 511 1849 167 0 19 chr12 41260365 41260683 -102525772 + AluJo SINE Alu 1 312 0 287 290 39 68 chr12 41260883 41261090 -102525365 - MLT1L LTR MaLR -372 243 43 1532 282 156 50 chr12 41261217 41263058 -102523397 + L2 LINE L2 1202 3252 -61 1710 164 131 27 chr12 41263058 41263508 -102522947 + LTR54B LTR ERV1 1 497 -1 1532 282 156 50 chr12 41263508 41263571 -102522884 + L2 LINE L2 3252 3307 -6 335 294 70 108 chr12 41263671 41264099 -102522356 - L2 LINE L2 -1 3271 2860 499 283 96 0 chr12 41264158 41264293 -102522162 - MIR SINE MIR -8 254 97 3984 99 67 5 chr12 41264293 41264891 -102521564 - MER41B LTR ERV1 0 635 1 499 283 96 0 chr12 41264891 41264932 -102521523 - MIR SINE MIR -165 97 61 258 290 39 77 chr12 41264952 41265091 -102521364 + MIR SINE MIR 64 194 -68 2086 129 14 0 chr12 41265091 41265386 -102521069 + AluSx SINE Alu 1 299 -13 258 290 39 77 chr12 41265386 41265453 -102521002 + MIR SINE MIR 194 262 0 241 186 0 0 chr12 41265876 41265919 -102520536 + (TA)n Simple_repeat Simple_repeat 2 44 0 765 307 39 13 chr12 41265956 41266344 -102520111 - L1MC4a LINE L1 -1911 5897 5500 320 127 0 0 chr12 41266399 41266454 -102520001 - Tigger7 DNA MER2_type -2364 123 69 * 359 191 15 0 chr12 41266451 41266519 -102519936 + Tigger7 DNA MER2_type 25 93 -640 267 246 16 0 chr12 41266512 41266573 -102519882 - Tigger7 DNA MER2_type -268 71 10 * 440 286 133 31 chr12 41266680 41266935 -102519520 - L1MC4a LINE L1 -760 5386 5106 1969 154 0 0 chr12 41267130 41267443 -102519012 - AluJb SINE Alu 0 313 1 344 235 25 34 chr12 41267576 41267695 -102518760 - L1MC4a LINE L1 -1439 4707 4590 228 277 68 40 chr12 41267756 41267904 -102518551 - MLT1I LTR MaLR -2 407 256 288 287 11 11 chr12 41268014 41268108 -102518347 + MLT1I LTR MaLR 116 209 -200 261 196 0 0 chr12 41268725 41268781 -102517674 + (CATA)n Simple_repeat Simple_repeat 2 57 0 710 283 39 0 chr12 41270105 41270335 -102516120 + L2 LINE L2 1271 1509 -1805 917 217 5 5 chr12 41270358 41270556 -102515899 + MER3 DNA MER1_type 8 205 -4 259 207 17 0 chr12 41270507 41270565 -102515890 - MER3 DNA MER1_type -108 101 43 * 460 229 84 28 chr12 41270568 41270747 -102515708 - L2 LINE L2 -1524 1790 1602 4901 138 9 1 chr12 41270750 41271555 -102514900 + L1PA15 LINE L1 5348 6158 -7 234 0 0 0 chr12 41271558 41271584 -102514871 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr12 41271591 41271614 -102514841 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 668 181 216 0 chr12 41271688 41271859 -102514596 - MER3 DNA MER1_type -1 208 1 2917 248 102 33 chr12 41271925 41272032 -102514423 - HAL1 LINE L1 -10 2497 2399 2281 83 0 23 chr12 41272032 41272333 -102514122 - AluY SINE Alu -17 294 1 2917 248 102 33 chr12 41272333 41273281 -102513174 - HAL1 LINE L1 -108 2399 1323 2214 113 0 3 chr12 41273281 41273582 -102512873 - AluSx SINE Alu -12 300 1 2917 248 102 33 chr12 41273582 41273892 -102512563 - HAL1 LINE L1 -1184 1323 1036 588 254 175 21 chr12 41273926 41274257 -102512198 - HAL1 LINE L1 -2123 384 3 547 237 65 27 chr12 41274261 41274447 -102512008 + L2 LINE L2 1822 2014 -1300 189 0 0 0 chr12 41274463 41274484 -102511971 + (TC)n Simple_repeat Simple_repeat 2 22 0 557 180 49 0 chr12 41274502 41274624 -102511831 - L1ME2 LINE L1 -1 6163 6036 742 197 53 90 chr12 41274624 41274782 -102511673 + L2 LINE L2 2067 2214 -1100 968 209 141 0 chr12 41274782 41275065 -102511390 + MER33 DNA MER1_type 1 323 -1 742 197 53 90 chr12 41275065 41275150 -102511305 + L2 LINE L2 2214 2301 -1013 2323 114 14 11 chr12 41275150 41275511 -102510944 + L1PA16 LINE L1 5804 6165 -1 2676 70 0 53 chr12 41275576 41275975 -102510480 + MLT2A1 LTR ERVL 5 382 -62 258 106 0 0 chr12 41275975 41276022 -102510433 + (TA)n Simple_repeat Simple_repeat 2 48 0 746 69 0 0 chr12 41276022 41276124 -102510331 - MLT2A2 LTR ERVL -347 106 5 581 101 9 37 chr12 41276186 41276284 -102510171 - L1PA16 LINE L1 0 6166 6070 259 24 0 48 chr12 41276284 41276326 -102510129 + (TA)n Simple_repeat Simple_repeat 2 41 0 286 0 0 0 chr12 41276336 41276369 -102510086 + MLT2A1 LTR ERVL 421 453 0 1202 310 85 19 chr12 41276383 41276958 -102509497 + L2 LINE L2 2288 2900 -414 1898 180 0 0 chr12 41276962 41277267 -102509188 - AluJb SINE Alu -7 305 1 1371 135 5 0 chr12 41277429 41277637 -102508818 - MER2 DNA MER2_type -135 210 2 502 116 0 32 chr12 41278229 41278324 -102508131 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 286 237 53 53 chr12 41278620 41278696 -102507759 - L2 LINE L2 0 3272 3197 630 204 21 0 chr12 41278700 41278842 -102507613 + MLT2B1 LTR ERVL 3 147 -373 352 141 24 82 chr12 41279217 41279302 -102507153 - MSTC LTR MaLR -1 427 348 696 151 144 0 chr12 41279302 41279441 -102507014 + MER46A DNA MER2_type 1 159 -77 241 333 0 38 chr12 41279763 41279868 -102506587 - MIR SINE MIR -63 145 45 369 271 119 30 chr12 41280352 41280578 -102505877 - MIR SINE MIR -7 255 10 1564 98 18 27 chr12 41280669 41280893 -102505562 + AluSg/x SINE Alu 73 294 -16 452 195 102 16 chr12 41281367 41281495 -102504960 - MER58A DNA MER1_type 0 139 1 833 202 35 21 chr12 41281768 41282076 -102504379 - MLT1A1 LTR MaLR -11 363 1 2314 109 3 0 chr12 41282539 41282841 -102503614 + AluSx SINE Alu 1 303 -9 2049 151 0 3 chr12 41282844 41283142 -102503313 + AluJb SINE Alu 1 297 -15 573 198 10 0 chr12 41283145 41283246 -102503209 + AluJo/FRAM SINE Alu 181 282 -30 31 0 0 0 chr12 41283253 41283284 -102503171 + AT_rich Low_complexity Low_complexity 1 31 0 420 257 203 31 chr12 41283526 41283738 -102502717 - MIR SINE MIR 0 262 9 791 207 62 6 chr12 41283738 41283917 -102502538 + MER5A DNA MER1_type 1 189 0 1528 97 0 0 chr12 41284600 41284796 -102501659 + AluSg SINE Alu 2 197 -113 811 125 0 0 chr12 41284847 41284959 -102501496 - AluSp/q SINE Alu -5 308 197 3087 140 24 25 chr12 41284959 41285707 -102500748 - L1MA4 LINE L1 -11 6289 5459 2346 88 0 10 chr12 41285913 41286218 -102500237 + AluSc SINE Alu 1 302 -7 381 245 10 0 chr12 41286700 41286798 -102499657 - L1ME1 LINE L1 -14 6152 6054 252 227 0 0 chr12 41286792 41286858 -102499597 - L1MEc LINE L1 -4335 2061 1996 * 744 247 71 37 chr12 41286975 41287327 -102499128 - L1MEc LINE L1 -4507 1889 1526 6268 41 0 0 chr12 41287353 41288101 -102498354 - L1PA5 LINE L1 -3 6151 5404 1353 109 0 4 chr12 41288101 41288341 -102498114 + L1M LINE L1 5193 5428 -755 23 33 0 0 chr12 41289297 41289327 -102497128 + AT_rich Low_complexity Low_complexity 1 30 0 383 337 18 30 chr12 41290226 41290395 -102496060 + MIR SINE MIR 29 195 -67 239 53 0 26 chr12 41290406 41290444 -102496011 + (TAA)n Simple_repeat Simple_repeat 2 38 0 949 261 54 0 chr12 41290445 41290686 -102495769 - MIR SINE MIR -8 254 1 334 258 72 10 chr12 41290698 41290795 -102495660 - MIR SINE MIR 0 262 160 1353 204 6 50 chr12 41290839 41291157 -102495298 + L1MD1 LINE L1 15 318 -6222 632 198 0 9 chr12 41291165 41291281 -102495174 + FLAM_C SINE Alu 1 115 -28 339 25 0 0 chr12 41291281 41291321 -102495134 + (GA)n Simple_repeat Simple_repeat 2 41 0 7384 191 63 70 chr12 41291321 41291974 -102494481 + L1MD1 LINE L1 317 973 -5567 243 0 0 0 chr12 41291974 41292001 -102494454 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7384 191 63 70 chr12 41292001 41292397 -102494058 + L1MD1 LINE L1 973 1370 -5170 230 0 33 0 chr12 41292397 41292427 -102494028 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7384 191 63 70 chr12 41292427 41293311 -102493144 + L1MD1 LINE L1 1370 2224 -4316 2179 130 0 0 chr12 41293311 41293604 -102492851 + AluSx SINE Alu 1 293 -19 7384 191 63 70 chr12 41293604 41294464 -102491991 + L1MD1 LINE L1 2224 3089 -3451 859 136 0 8 chr12 41294471 41294603 -102491852 - THE1B LTR MaLR 0 364 234 2132 118 0 0 chr12 41294607 41294887 -102491568 - AluSx SINE Alu -2 310 31 295 100 0 0 chr12 41294911 41294951 -102491504 + Alu SINE Alu 2 41 -261 1421 94 0 5 chr12 41295003 41295204 -102491251 - THE1B LTR MaLR -164 200 1 360 179 60 0 chr12 41295308 41295375 -102491080 + FLAM SINE Alu 48 118 -15 769 254 17 27 chr12 41295398 41295492 -102490963 + L1MD1 LINE L1 3233 3326 -3214 2436 72 3 0 chr12 41295492 41295785 -102490670 + AluY SINE Alu 1 294 -17 769 254 17 27 chr12 41295785 41295985 -102490470 + L1MD1 LINE L1 3326 3524 -3016 5422 127 195 91 chr12 41295994 41297530 -102488925 - pTR5 LTR ERV1 0 2438 744 2158 255 14 4 chr12 41297530 41298235 -102488220 + L1MD1 LINE L1 3520 4231 -2309 2240 60 0 35 chr12 41298293 41298509 -102487946 - L1PB1 LINE L1 -43 6108 5905 2414 71 0 0 chr12 41298509 41298805 -102487650 - AluY SINE Alu -15 296 1 2240 60 0 35 chr12 41298805 41298907 -102487548 - L1PB1 LINE L1 -246 5905 5801 * 4617 208 25 22 chr12 41298890 41299484 -102486971 + L1MD1 LINE L1 4198 4789 -1847 2118 142 3 0 chr12 41299484 41299793 -102486662 + AluSg SINE Alu 1 310 0 4617 208 25 22 chr12 41299793 41300557 -102485898 + L1MD1 LINE L1 4789 5549 -1087 2224 97 3 0 chr12 41300557 41300845 -102485610 + AluSg SINE Alu 1 289 -21 4617 208 25 22 chr12 41300845 41301730 -102484725 + L1MD1 LINE L1 5549 6449 -187 933 172 0 0 chr12 41301741 41301886 -102484569 + AluJb SINE Alu 145 289 -23 2496 113 35 0 chr12 41301956 41302329 -102484126 + L1PA11 LINE L1 5788 6173 -1 25 0 0 0 chr12 41303058 41303083 -102483372 + AT_rich Low_complexity Low_complexity 1 25 0 2098 137 0 0 chr12 41303087 41303396 -102483059 - AluSx SINE Alu 0 309 1 1571 190 21 14 chr12 41303398 41303687 -102482768 - AluJo SINE Alu -19 293 3 287 206 56 24 chr12 41303857 41303983 -102482472 + (TA)n Simple_repeat Simple_repeat 2 131 0 1753 152 22 4 chr12 41304511 41304788 -102481667 - AluJo SINE Alu -30 282 1 222 195 0 0 chr12 41304972 41305013 -102481442 + CT-rich Low_complexity Low_complexity 2 42 0 1698 93 0 52 chr12 41305039 41305287 -102481168 + AluSx SINE Alu 57 291 -21 265 287 23 23 chr12 41305808 41305895 -102480560 + MIR3 SINE MIR 74 160 -48 33 25 0 0 chr12 41306470 41306510 -102479945 + AT_rich Low_complexity Low_complexity 1 40 0 405 118 0 0 chr12 41307038 41307106 -102479349 - MSTB LTR MaLR 0 432 365 2187 96 7 10 chr12 41307122 41307423 -102479032 - AluSx SINE Alu -11 301 2 1189 129 16 5 chr12 41307424 41307618 -102478837 - MSTB LTR MaLR -230 196 1 4511 107 15 21 chr12 41308046 41308570 -102477885 - L1MA5 LINE L1 -2 6298 5779 2366 78 0 0 chr12 41308570 41308854 -102477601 - AluSc SINE Alu -13 296 13 4511 107 15 21 chr12 41308854 41309074 -102477381 - L1MA5 LINE L1 -521 5779 5559 418 250 16 23 chr12 41309091 41309219 -102477236 - HAL1 LINE L1 -1773 734 608 737 226 108 66 chr12 41309380 41309645 -102476810 + HAL1 LINE L1 1083 1370 -1137 1826 133 16 44 chr12 41309645 41309836 -102476619 + AluSx SINE Alu 3 183 -129 2087 120 14 14 chr12 41309836 41310128 -102476327 - AluSx SINE Alu -18 294 3 1826 133 16 44 chr12 41310128 41310253 -102476202 + AluSx SINE Alu 183 310 -2 737 226 108 66 chr12 41310253 41310367 -102476088 + HAL1 LINE L1 1370 1478 -1029 1019 231 28 63 chr12 41311296 41311694 -102474761 - MLT1H LTR MaLR 0 549 104 2195 114 3 3 chr12 41311694 41312000 -102474455 - AluSx SINE Alu -6 306 1 1019 231 28 63 chr12 41312000 41312033 -102474422 - MLT1H LTR MaLR -445 104 71 181 245 94 38 chr12 41312377 41312430 -102474025 + L2 LINE L2 3215 3270 -2 1925 141 23 23 chr12 41312489 41312793 -102473662 - AluJo SINE Alu -8 304 1 2142 119 0 0 chr12 41313136 41313448 -102473007 + AluSx SINE Alu 1 312 0 1562 95 0 0 chr12 41314320 41314546 -102471909 - AluSg/x SINE Alu 0 310 85 336 44 89 0 chr12 41314890 41314935 -102471520 - LTR47A LTR ERVL -403 49 1 24 0 0 0 chr12 41315278 41315302 -102471153 + AT_rich Low_complexity Low_complexity 1 24 0 999 189 0 35 chr12 41315590 41315791 -102470664 + AluJb SINE Alu 87 280 -32 196 53 53 0 chr12 41315794 41315832 -102470623 + A-rich Low_complexity Low_complexity 1 40 0 2683 180 33 8 chr12 41315921 41316442 -102470013 + L1MB4 LINE L1 5637 6170 -10 1462 137 4 13 chr12 41316787 41317014 -102469441 + AluJb SINE Alu 88 312 0 333 0 0 0 chr12 41317652 41317689 -102468766 + (CA)n Simple_repeat Simple_repeat 1 37 0 522 291 87 5 chr12 41318186 41318382 -102468073 - L2 LINE L2 -11 3302 3091 48 67 0 0 chr12 41318382 41318472 -102467983 + AT_rich Low_complexity Low_complexity 1 90 0 413 204 19 29 chr12 41318511 41318614 -102467841 - MER97a DNA MER1_type? 0 894 793 1624 189 133 76 chr12 41318628 41318663 -102467792 + MLT1E LTR MaLR 5 37 -556 2184 150 129 5 chr12 41318663 41319044 -102467411 + MSTA LTR MaLR 1 428 0 1624 189 133 76 chr12 41319044 41319226 -102467229 + MLT1E LTR MaLR 37 207 -386 1504 186 45 4 chr12 41319226 41319490 -102466965 - AluJb SINE Alu -37 275 1 1624 189 133 76 chr12 41319490 41319759 -102466696 + MLT1E LTR MaLR 207 520 -73 5416 192 53 51 chr12 41319759 41320752 -102465703 - L1 LINE L1 -2920 3408 2418 2056 134 0 3 chr12 41320752 41321051 -102465404 - AluSx SINE Alu -14 298 1 5416 192 53 51 chr12 41321051 41322690 -102463765 - L1 LINE L1 -3910 2418 772 2801 185 28 6 chr12 41322720 41323227 -102463228 - L1 LINE L1 -4618 710 193 4624 80 78 153 chr12 41323227 41324119 -102462336 - LTR12 LTR ERV1 0 826 1 839 202 45 49 chr12 41324300 41324587 -102461868 - pTR5 LTR ERV1 -1410 1028 743 1141 141 49 0 chr12 41324587 41324772 -102461683 - L1 LINE L1 -5132 196 3 379 209 55 11 chr12 41324772 41324863 -102461592 + MLT1E LTR MaLR 498 592 -1 3733 143 52 66 chr12 41324864 41325641 -102460814 + LTR1 LTR ERV1 19 784 -1 31 26 0 0 chr12 41325734 41325772 -102460683 + AT_rich Low_complexity Low_complexity 1 38 0 2211 106 0 14 chr12 41325772 41326065 -102460390 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr12 41326072 41326093 -102460362 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 22 70 0 0 chr12 41326106 41326149 -102460306 + AT_rich Low_complexity Low_complexity 1 43 0 1574 230 22 54 chr12 41326327 41326732 -102459723 - MER97a DNA MER1_type? -416 478 87 580 298 136 16 chr12 41326775 41327033 -102459422 - L2 LINE L2 -205 3108 2820 813 201 6 41 chr12 41327036 41327205 -102459250 + AluJo SINE Alu 1 163 -149 263 239 80 94 chr12 41327311 41327449 -102459006 + MIR SINE MIR 77 212 -50 1870 228 44 57 chr12 41327499 41328048 -102458407 - MER34 LTR ERV1 0 542 1 1813 184 29 86 chr12 41328758 41329246 -102457209 + LTR8 LTR ERV1 117 576 -115 2179 114 3 0 chr12 41329247 41329545 -102456910 + AluSp SINE Alu 1 299 -14 23 33 0 0 chr12 41329661 41329691 -102456764 + AT_rich Low_complexity Low_complexity 1 30 0 2397 62 3 3 chr12 41329691 41329983 -102456472 - AluY SINE Alu -19 292 1 820 163 0 44 chr12 41330047 41330182 -102456273 + FLAM_A SINE Alu 2 130 -3 1778 134 13 37 chr12 41330264 41330562 -102455893 - AluSx SINE Alu -21 291 1 23 0 0 0 chr12 41330573 41330596 -102455859 + AT_rich Low_complexity Low_complexity 1 23 0 376 182 16 25 chr12 41330919 41331040 -102455415 + CT-rich Low_complexity Low_complexity 1 120 0 4216 227 71 50 chr12 41331501 41332863 -102453592 + L1MDb LINE L1 783 2116 -4290 2182 128 0 3 chr12 41332863 41333159 -102453296 + AluSx SINE Alu 1 295 -17 2108 136 3 3 chr12 41333162 41333471 -102452984 + AluSg SINE Alu 1 309 -1 4216 227 71 50 chr12 41333471 41333732 -102452723 + L1MDb LINE L1 2117 2427 -3979 1048 239 37 14 chr12 41333732 41333950 -102452505 - MER58A DNA MER1_type -1 223 1 4216 227 71 50 chr12 41333950 41334085 -102452370 + L1MDb LINE L1 2427 2558 -3848 2220 84 16 9 chr12 41334087 41334486 -102451969 - LTR7 LTR ERV1 -2 448 1 1210 201 70 53 chr12 41334486 41334860 -102451595 + L1MDb LINE L1 2554 2933 -3473 589 103 31 21 chr12 41334901 41334998 -102451457 + MER4A LTR ERV1 1 98 -566 1779 121 20 38 chr12 41334998 41335352 -102451103 + MER4A LTR ERV1 261 664 0 384 272 0 0 chr12 41335357 41335449 -102451006 + L1MDb LINE L1 4037 4128 -2278 * 1144 164 54 110 chr12 41335448 41335820 -102450635 + L1M4 LINE L1 2683 3033 -3113 2018 132 90 15 chr12 41335822 41336156 -102450299 + L1PA16 LINE L1 5804 6162 -4 230 168 119 69 chr12 41336202 41336303 -102450152 + L1ME4a LINE L1 5910 6015 -106 * 926 251 56 34 chr12 41336298 41336493 -102449962 + L1M4 LINE L1 3024 3213 -2933 1677 113 0 4 chr12 41336493 41336754 -102449701 - AluSg SINE Alu 0 319 60 926 251 56 34 chr12 41336754 41336970 -102449485 + L1M4 LINE L1 3213 3446 -2700 457 214 24 56 chr12 41337005 41337028 -102449427 - MLT2B1 LTR ERVL -34 486 464 1923 199 93 35 chr12 41337028 41337491 -102448964 - LTR2B LTR ERV1 0 490 1 457 214 24 56 chr12 41337491 41337593 -102448862 - MLT2B1 LTR ERVL -56 464 365 1916 84 105 28 chr12 41337639 41337925 -102448530 - AluY SINE Alu -3 308 1 384 283 144 0 chr12 41337998 41338171 -102448284 + L1ME3 LINE L1 5965 6162 0 2311 100 0 3 chr12 41338280 41338589 -102447866 - AluY SINE Alu -3 308 1 22 56 0 0 chr12 41339250 41339286 -102447169 + AT_rich Low_complexity Low_complexity 1 36 0 1885 71 34 58 chr12 41339403 41339697 -102446758 + L1MA3 LINE L1 6014 6300 -5 2424 65 3 3 chr12 41339747 41340054 -102446401 + AluY SINE Alu 1 307 -4 1561 176 0 11 chr12 41340176 41340438 -102446017 + AluJo SINE Alu 36 294 -18 208 228 13 20 chr12 41340480 41340629 -102445826 + (TA)n Simple_repeat Simple_repeat 1 148 0 538 226 57 31 chr12 41340635 41340794 -102445661 - L2 LINE L2 -26 3287 3125 1703 185 0 7 chr12 41340814 41341106 -102445349 + AluJb SINE Alu 1 290 -22 1546 224 171 58 chr12 41341268 41341635 -102444820 - L2 LINE L2 -273 3040 2716 1693 178 0 22 chr12 41341635 41341950 -102444505 + AluJo SINE Alu 5 312 0 1546 224 171 58 chr12 41341950 41342252 -102444203 - L2 LINE L2 -597 2716 2295 1619 219 32 19 chr12 41342296 41342360 -102444095 + MLT1C LTR MaLR 89 151 -316 2282 97 3 3 chr12 41342360 41342660 -102443795 - AluSq SINE Alu -13 300 1 1619 219 32 19 chr12 41342660 41342969 -102443486 + MLT1C LTR MaLR 151 467 0 774 244 44 89 chr12 41342969 41343180 -102443275 - L2 LINE L2 -1015 2299 2105 2459 78 0 3 chr12 41343180 41343488 -102442967 + AluY SINE Alu 1 307 -4 774 244 44 89 chr12 41343488 41343591 -102442864 - L2 LINE L2 -1209 2105 1999 695 179 16 108 chr12 41343591 41343853 -102442602 - MER51A LTR ERV1 -47 587 346 473 264 121 21 chr12 41343990 41344229 -102442226 - L2 LINE L2 -1492 1822 1560 1374 162 38 11 chr12 41344231 41344497 -102441958 + MER33 DNA MER1_type 1 273 -51 2148 115 3 22 chr12 41344503 41344816 -102441639 - AluSx SINE Alu -5 307 1 1577 145 6 76 chr12 41344819 41345136 -102441319 - AluJb SINE Alu -9 303 9 229 276 0 0 chr12 41345136 41345194 -102441261 + MER33 DNA MER1_type 262 319 -5 552 242 103 24 chr12 41345213 41345378 -102441077 - L2 LINE L2 -1763 1551 1374 285 328 101 8 chr12 41345387 41345625 -102440830 - L1M4 LINE L1 -1146 5000 4741 3018 134 71 4 chr12 41345792 41346270 -102440185 - L1PA16 LINE L1 -9 6157 5648 1473 150 0 21 chr12 41346270 41346510 -102439945 - MER4E LTR ERV1 -1 778 544 1129 254 108 40 chr12 41346499 41346897 -102439558 - MER77 LTR ERV1 -6 599 175 * 2249 111 0 0 chr12 41347130 41347428 -102439027 - AluSx SINE Alu -14 298 1 181 208 125 0 chr12 41348675 41348723 -102437732 + MIR SINE MIR 87 140 -122 2936 188 63 9 chr12 41348968 41349096 -102437359 - MER90 LTR ERV1 -4 610 490 1886 126 0 4 chr12 41349096 41349359 -102437096 - AluJb SINE Alu -21 291 30 2936 188 63 9 chr12 41349359 41349805 -102436650 - MER90 LTR ERV1 -124 490 5 305 313 82 0 chr12 41349871 41350005 -102436450 - MER96 DNA MER1_type? -23 152 8 2345 97 10 6 chr12 41350155 41350466 -102435989 + AluSx SINE Alu 1 312 0 381 268 44 92 chr12 41350507 41350699 -102435756 + L2 LINE L2 2977 3152 -161 2248 126 0 0 chr12 41350699 41351001 -102435454 - AluSx SINE Alu -10 302 1 381 268 44 92 chr12 41351001 41351103 -102435352 + L2 LINE L2 3152 3257 -56 27 29 0 0 chr12 41352222 41352256 -102434199 + AT_rich Low_complexity Low_complexity 1 34 0 301 275 28 37 chr12 41353427 41353536 -102432919 + MIR SINE MIR 1 108 -154 1518 169 95 4 chr12 41354237 41354510 -102431945 + AluJb SINE Alu 1 298 -14 1726 152 54 4 chr12 41355121 41355397 -102431058 + AluSx SINE Alu 21 310 -2 3093 158 22 6 chr12 41355452 41355941 -102430514 - LOR1a LTR ERV1 0 497 1 2383 95 3 0 chr12 41356216 41356521 -102429934 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr12 41358992 41359014 -102427441 + AT_rich Low_complexity Low_complexity 1 22 0 503 354 111 19 chr12 41359331 41359656 -102426799 - L2 LINE L2 -4 3268 2914 181 0 0 0 chr12 41359956 41359976 -102426479 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2311 59 3 21 chr12 41359976 41360259 -102426196 - AluY SINE Alu -5 306 1 643 257 22 16 chr12 41360471 41360654 -102425801 + MER34 LTR ERV1 2 185 -357 321 238 56 88 chr12 41360668 41360828 -102425627 + LTR48 LTR ERV1 626 780 -7 378 282 74 13 chr12 41360832 41360981 -102425474 - MIR SINE MIR -59 203 46 198 286 0 36 chr12 41361184 41361240 -102425215 + MIR SINE MIR 79 132 -130 1928 111 76 7 chr12 41361892 41362180 -102424275 + AluSq SINE Alu 1 308 -5 955 276 174 20 chr12 41362328 41362781 -102423674 + LTR33A LTR ERVL 1 523 0 27 0 0 0 chr12 41363919 41363946 -102422509 + AT_rich Low_complexity Low_complexity 1 27 0 1652 91 0 10 chr12 41363946 41364155 -102422300 - AluSq SINE Alu -18 295 89 517 97 0 0 chr12 41364157 41364229 -102422226 + AluSp/q SINE Alu 229 300 -13 194 292 15 0 chr12 41364868 41364933 -102421522 + MIR SINE MIR 90 155 -107 835 196 0 26 chr12 41364997 41365150 -102421305 + AluJb SINE Alu 133 281 -31 1675 184 16 7 chr12 41365195 41365504 -102420951 + AluJo SINE Alu 1 312 0 443 305 74 0 chr12 41365945 41366148 -102420307 - MIR SINE MIR 0 262 45 414 250 28 0 chr12 41366304 41366412 -102420043 + L2 LINE L2 3203 3313 0 753 129 0 16 chr12 41366756 41366880 -102419575 - AluSg/x SINE Alu -14 298 177 1806 128 91 0 chr12 41366896 41367170 -102419285 - AluSx SINE Alu -13 299 1 2162 102 3 3 chr12 41367218 41367525 -102418930 + AluSx SINE Alu 1 307 0 1991 201 66 81 chr12 41367711 41367808 -102418647 - L1MC5 LINE L1 -214 7747 7650 1836 195 0 6 chr12 41367808 41368121 -102418334 + AluJo SINE Alu 1 311 -1 1991 201 66 81 chr12 41368121 41368487 -102417968 - L1MC5 LINE L1 -311 7650 7298 2200 122 0 28 chr12 41368487 41368806 -102417649 + AluSx SINE Alu 3 312 0 1991 201 66 81 chr12 41368806 41369128 -102417327 - L1MC5 LINE L1 -663 7298 6973 241 281 0 61 chr12 41369134 41369216 -102417239 + MIR SINE MIR 23 99 -163 207 0 0 0 chr12 41369218 41369241 -102417214 + (T)n Simple_repeat Simple_repeat 1 23 0 319 237 21 10 chr12 41369272 41369369 -102417086 + MIR SINE MIR 104 201 -61 299 279 0 12 chr12 41369552 41369638 -102416817 - MER5B DNA MER1_type -89 89 5 549 273 136 0 chr12 41369708 41369906 -102416549 + MIR SINE MIR 32 256 -6 2357 98 16 0 chr12 41369935 41370241 -102416214 + AluY SINE Alu 1 311 0 1944 202 68 22 chr12 41371349 41371804 -102414651 + MLT1D LTR MaLR 3 478 -27 27 29 0 0 chr12 41371804 41371838 -102414617 + AT_rich Low_complexity Low_complexity 1 34 0 2152 119 0 3 chr12 41371838 41372132 -102414323 - AluSq SINE Alu -20 293 1 255 31 0 0 chr12 41372134 41372166 -102414289 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1695 165 15 7 chr12 41372170 41372443 -102414012 - AluJo SINE Alu -37 275 1 239 321 76 49 chr12 41372508 41372692 -102413763 + L2 LINE L2 2850 3038 -234 226 306 0 0 chr12 41372956 41373018 -102413437 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 203 267 0 0 chr12 41373460 41373520 -102412935 + T-rich Low_complexity Low_complexity 1 60 0 15559 196 49 17 chr12 41373526 41375773 -102410682 - L1PB1 LINE L1 0 6867 4693 2086 122 3 23 chr12 41375773 41376077 -102410378 + AluSx SINE Alu 1 298 -14 15559 196 49 17 chr12 41376077 41377271 -102409184 - L1PB1 LINE L1 -2174 4693 3539 6138 60 29 3 chr12 41377271 41378031 -102408424 + LTR17 LTR ERV1 1 780 0 15559 196 49 17 chr12 41378031 41379407 -102407048 - L1PB1 LINE L1 -3328 3539 2208 2103 75 45 0 chr12 41379407 41379674 -102406781 + AluSp SINE Alu 30 308 -5 15559 196 49 17 chr12 41379674 41381478 -102404977 - L1PB1 LINE L1 -4659 2208 10 504 332 29 4 chr12 41381807 41382045 -102404410 - MIR SINE MIR -13 249 6 225 108 0 0 chr12 41382222 41382259 -102404196 + (CA)n Simple_repeat Simple_repeat 2 38 0 268 267 122 15 chr12 41382272 41382403 -102404052 + MER112 DNA MER1_type 116 260 0 312 241 27 13 chr12 41382442 41382522 -102403933 + MIR3 SINE MIR 79 160 -48 2362 97 0 0 chr12 41382528 41382828 -102403627 - AluSg SINE Alu -9 301 2 421 256 6 112 chr12 41382831 41383021 -102403434 - MER5B DNA MER1_type -1 177 17 2353 109 3 0 chr12 41383390 41383701 -102402754 - AluSp SINE Alu -1 312 1 526 154 66 0 chr12 41383704 41383795 -102402660 - AluJo SINE Alu -24 288 192 702 197 0 0 chr12 41383808 41383930 -102402525 - AluJo SINE Alu -187 125 4 317 274 57 8 chr12 41383934 41384058 -102402397 - MIR SINE MIR -7 255 126 2267 102 0 3 chr12 41384360 41384654 -102401801 + AluSx SINE Alu 1 293 -19 1262 258 40 72 chr12 41384990 41385098 -102401357 - MER34 LTR ERV1 -5 537 427 2072 122 6 16 chr12 41385098 41385410 -102401045 - AluSx SINE Alu -3 309 1 1262 258 40 72 chr12 41385410 41385856 -102400599 - MER34 LTR ERV1 -115 427 1 1967 153 0 0 chr12 41386242 41386536 -102399919 - AluSx SINE Alu -18 294 1 640 250 83 87 chr12 41386541 41386687 -102399768 + L1MC5 LINE L1 7029 7174 -787 714 200 0 0 chr12 41386687 41386802 -102399653 + FLAM_A SINE Alu 3 117 -16 640 250 83 87 chr12 41386802 41387128 -102399327 + L1MC5 LINE L1 7174 7399 -562 2161 130 0 0 chr12 41387128 41387420 -102399035 + AluSg1 SINE Alu 1 292 -17 640 250 83 87 chr12 41387420 41387806 -102398649 + L1MC5 LINE L1 7399 7785 -176 651 171 125 62 chr12 41387899 41388075 -102398380 + MER5A DNA MER1_type 3 189 0 1668 175 10 23 chr12 41388948 41389076 -102397379 + AluJo SINE Alu 5 133 -179 2285 97 0 7 chr12 41389076 41389386 -102397069 + AluSg SINE Alu 1 308 -2 1668 175 10 23 chr12 41389386 41389565 -102396890 + AluJo SINE Alu 133 308 -4 448 257 0 0 chr12 41389590 41389695 -102396760 + MER103 DNA DNA 9 113 -53 258 116 0 47 chr12 41389837 41389880 -102396575 - MER47B DNA MER2_type 0 418 378 1741 181 128 13 chr12 41389885 41390162 -102396293 - MER47B DNA MER2_type -1905 418 174 234 0 0 0 chr12 41390162 41390188 -102396267 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1455 134 86 37 chr12 41390191 41390459 -102395996 - AluJo SINE Alu -31 281 1 1741 181 128 13 chr12 41390459 41390552 -102395903 - MER47B DNA MER2_type -2150 173 1 2571 34 17 0 chr12 41390692 41390987 -102395468 - AluY SINE Alu -11 300 1 408 279 108 78 chr12 41391903 41392357 -102394098 - L2 LINE L2 -40 3232 2760 578 168 30 0 chr12 41392360 41392461 -102393994 + MLT1D LTR MaLR 402 505 0 202 325 86 8 chr12 41393119 41393236 -102393219 - L2 LINE L2 -1 3312 3187 2377 85 7 0 chr12 41393542 41393848 -102392607 + AluSp SINE Alu 1 308 -5 1049 95 51 13 chr12 41393849 41394007 -102392448 - THE1C LTR MaLR -211 164 1 254 383 0 0 chr12 41394698 41394813 -102391642 + G-rich Low_complexity Low_complexity 4 118 0 2277 87 13 7 chr12 41396442 41396751 -102389704 + AluSp SINE Alu 1 311 -2 666 260 42 128 chr12 41396884 41397301 -102389154 + MER34 LTR ERV1 1 452 -90 1649 65 83 0 chr12 41397301 41397517 -102388938 + AluY SINE Alu 9 242 -69 666 260 42 128 chr12 41397517 41397528 -102388927 + MER34 LTR ERV1 452 462 -80 1402 153 125 4 chr12 41397528 41397776 -102388679 + AluJb SINE Alu 5 282 -30 324 0 0 0 chr12 41397785 41397821 -102388634 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 666 260 42 128 chr12 41397821 41397974 -102388481 + MER34 LTR ERV1 470 542 0 535 191 0 0 chr12 41398437 41398521 -102387934 + AluJ/FLAM SINE Alu 2 85 -227 878 276 43 81 chr12 41399078 41399585 -102386870 + MER34 LTR ERV1 25 512 -30 666 276 84 4 chr12 41399619 41399858 -102386597 + MIR SINE MIR 5 262 0 411 154 90 0 chr12 41399863 41399941 -102386514 + Tigger4(Zombi) DNA MER2_type 2 86 -2645 * 2344 100 18 131 chr12 41399939 41399984 -102386471 + Tigger4(Zombi) DNA MER2_type 2295 2343 -388 2148 112 7 0 chr12 41399984 41400279 -102386176 + AluSx SINE Alu 1 297 -15 2344 100 18 131 chr12 41400279 41400342 -102386113 + Tigger4(Zombi) DNA MER2_type 2343 2411 -320 2349 83 3 0 chr12 41400342 41400644 -102385811 + AluY SINE Alu 1 303 -8 2469 69 0 16 chr12 41400653 41400958 -102385497 + AluY SINE Alu 2 301 -10 2344 100 18 131 chr12 41400958 41401281 -102385174 + Tigger4(Zombi) DNA MER2_type 2419 2679 -52 2220 121 3 3 chr12 41401281 41401594 -102384861 - AluSq SINE Alu 0 313 1 2344 100 18 131 chr12 41401594 41401640 -102384815 + Tigger4(Zombi) DNA MER2_type 2679 2729 -2 183 269 214 41 chr12 41401773 41401841 -102384614 - MIR SINE MIR -6 256 201 2410 81 0 10 chr12 41401841 41402138 -102384317 - AluSq SINE Alu -19 294 1 183 269 214 41 chr12 41402138 41402214 -102384241 - MIR SINE MIR -61 201 87 1941 141 26 7 chr12 41402398 41402702 -102383753 + AluSx SINE Alu 1 310 -2 2108 126 3 0 chr12 41402862 41403156 -102383299 - AluSx SINE Alu -17 295 1 2025 119 3 31 chr12 41403255 41403573 -102382882 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr12 41403841 41403871 -102382584 + AT_rich Low_complexity Low_complexity 1 30 0 2162 96 0 17 chr12 41404053 41404345 -102382110 + AluSx SINE Alu 1 287 -25 2229 132 0 0 chr12 41405496 41405806 -102380649 + AluSx SINE Alu 1 310 -2 364 295 40 23 chr12 41406737 41406910 -102379545 + MIR SINE MIR 63 238 -24 285 335 66 47 chr12 41407131 41407450 -102379005 + L2 LINE L2 1620 1944 -1370 182 167 0 24 chr12 41407594 41407636 -102378819 + CT-rich Low_complexity Low_complexity 2 42 0 393 240 77 0 chr12 41407735 41407839 -102378616 - MER94 DNA DNA -3 131 20 241 192 64 77 chr12 41407866 41407897 -102378558 + L2 LINE L2 2213 2243 -1071 455 291 64 28 chr12 41407897 41408148 -102378307 + MIR SINE MIR 2 261 -1 241 192 64 77 chr12 41408148 41408194 -102378261 + L2 LINE L2 2243 2289 -1025 2641 52 0 7 chr12 41408284 41408591 -102377864 - AluSp SINE Alu -6 307 3 1813 163 3 22 chr12 41408594 41408907 -102377548 - AluJo SINE Alu -5 307 1 844 143 8 8 chr12 41409247 41409380 -102377075 + FLAM_C SINE Alu 1 133 0 215 163 47 0 chr12 41410230 41410273 -102376182 + (TGG)n Simple_repeat Simple_repeat 1 45 0 180 111 0 0 chr12 41410274 41410301 -102376154 + (TG)n Simple_repeat Simple_repeat 1 27 0 718 241 139 19 chr12 41411499 41411715 -102374740 - MLT1H1 LTR MaLR -11 544 303 254 197 164 0 chr12 41412055 41412116 -102374339 + L2 LINE L2 3202 3272 0 735 293 119 63 chr12 41413465 41413989 -102372466 - L2 LINE L2 -1 3312 2762 292 256 123 89 chr12 41414042 41414245 -102372210 + L2 LINE L2 3104 3313 0 235 307 0 57 chr12 41414528 41414616 -102371839 + MIR SINE MIR 29 111 -151 543 266 236 0 chr12 41414918 41415117 -102371338 - MIR SINE MIR 0 262 17 204 328 60 15 chr12 41415502 41415569 -102370886 + L2 LINE L2 3240 3309 -4 243 0 0 0 chr12 41416208 41416235 -102370220 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 405 0 0 0 chr12 41416234 41416279 -102370176 + (TG)n Simple_repeat Simple_repeat 2 46 0 318 275 69 50 chr12 41416361 41416551 -102369904 + MIR SINE MIR 24 216 -46 198 0 0 0 chr12 41416913 41416935 -102369520 + (TG)n Simple_repeat Simple_repeat 2 23 0 326 309 66 86 chr12 41417063 41417412 -102369043 - L2 LINE L2 -36 3236 2895 2438 46 19 16 chr12 41417476 41417783 -102368672 + AluY SINE Alu 1 308 -3 360 183 44 88 chr12 41417783 41417891 -102368564 + L1MB7 LINE L1 6039 6141 -43 2249 60 0 69 chr12 41417891 41418041 -102368414 + AluY SINE Alu 1 119 -192 531 0 0 0 chr12 41418041 41418100 -102368355 + (TA)n Simple_repeat Simple_repeat 2 60 0 2249 60 0 69 chr12 41418100 41418266 -102368189 + AluY SINE Alu 119 295 -16 360 183 44 88 chr12 41418266 41418294 -102368161 + L1MB7 LINE L1 6141 6169 -15 318 282 122 6 chr12 41418372 41418553 -102367902 - L2 LINE L2 -557 2757 2556 1675 223 79 24 chr12 41418942 41419396 -102367059 + L1MB8 LINE L1 5648 6126 -52 568 107 33 25 chr12 41419405 41419527 -102366928 + GA-rich Low_complexity Low_complexity 1 123 0 274 236 187 41 chr12 41420431 41420554 -102365901 + L2 LINE L2 3133 3273 -40 9119 181 28 15 chr12 41420961 41421725 -102364730 - L1PA16 LINE L1 0 6869 6117 2431 131 21 21 chr12 41421725 41422100 -102364355 - THE1C LTR MaLR 0 375 1 9119 181 28 15 chr12 41422100 41424153 -102362302 - L1PA16 LINE L1 -752 6117 4024 10514 142 53 16 chr12 41424161 41424796 -102361659 - L1PA16 LINE L1 -4290 2559 1949 2076 133 3 3 chr12 41424796 41425096 -102361359 - AluSx SINE Alu -12 300 1 10514 142 53 16 chr12 41425096 41426205 -102360250 - L1PA16 LINE L1 -4900 1949 750 2007 206 53 14 chr12 41426238 41426675 -102359780 + MSTB2 LTR MaLR 1 454 -3 2090 124 14 0 chr12 41427120 41427411 -102359044 + AluSq SINE Alu 1 295 -18 1133 218 58 10 chr12 41427591 41427885 -102358570 - L1ME3A LINE L1 -5 6165 5858 1358 213 42 3 chr12 41427989 41428299 -102358156 + L1MA6 LINE L1 5978 6299 -1 208 299 103 10 chr12 41428397 41428494 -102357961 - L2 LINE L2 -763 2551 2446 2361 76 0 0 chr12 41428498 41428788 -102357667 - AluY SINE Alu -21 290 1 272 237 0 65 chr12 41428788 41428876 -102357579 - L2 LINE L2 -926 2388 2307 2134 117 3 0 chr12 41430637 41430927 -102355528 - AluSx SINE Alu -21 291 1 250 287 112 58 chr12 41430956 41431144 -102355311 - MIR SINE MIR -32 230 33 371 104 0 30 chr12 41431940 41432007 -102354448 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 881 197 13 13 chr12 41432024 41432327 -102354128 + MER93b LTR ERV1 1 402 0 2022 116 14 0 chr12 41432362 41432647 -102353808 + AluJb SINE Alu 7 295 -17 470 17 17 0 chr12 41432657 41432716 -102353739 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1805 145 0 24 chr12 41433223 41433512 -102352943 + AluSx SINE Alu 24 305 -7 2511 190 30 4 chr12 41435197 41435665 -102350790 - MLT1D LTR MaLR 0 505 26 2197 122 6 3 chr12 41435886 41436197 -102350258 - AluSp SINE Alu -1 312 1 22 56 0 0 chr12 41436220 41436256 -102350199 + AT_rich Low_complexity Low_complexity 1 36 0 198 143 0 0 chr12 41436375 41436410 -102350045 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 219 253 121 81 chr12 41437552 41437651 -102348804 + L2 LINE L2 3170 3272 0 1155 203 60 48 chr12 41437750 41438152 -102348303 - MER4C LTR ERV1 -18 447 149 610 149 8 50 chr12 41438179 41438300 -102348155 - MER4C LTR ERV1 -349 116 1 434 254 45 82 chr12 41439375 41439643 -102346812 - MIR SINE MIR 0 262 5 2292 115 0 0 chr12 41439698 41440002 -102346453 + AluSx SINE Alu 1 304 -8 1586 159 3 61 chr12 41440435 41440761 -102345694 + MLT1B LTR MaLR 84 390 0 621 189 42 14 chr12 41440768 41440911 -102345544 - MER20 DNA MER1_type -42 177 31 711 213 98 138 chr12 41441115 41441567 -102344888 + MER34B LTR ERV1 5 430 -135 2058 100 53 13 chr12 41441567 41441866 -102344589 + AluY SINE Alu 1 311 0 711 213 98 138 chr12 41441866 41441995 -102344460 + MER34B LTR ERV1 430 563 -2 561 133 203 0 chr12 41442982 41443110 -102343345 + LTR47A LTR ERVL 261 414 -38 2729 151 72 2 chr12 41443902 41444373 -102342082 + L1MB2 LINE L1 5666 6169 -2 312 231 46 9 chr12 41444605 41444713 -102341742 + L1ME4a LINE L1 6010 6121 0 1033 203 52 19 chr12 41445051 41445263 -102341192 - MER20 DNA MER1_type 0 219 1 197 382 0 0 chr12 41445782 41445850 -102340605 + MIR SINE MIR 158 225 -37 357 235 38 49 chr12 41445866 41445976 -102340479 + MIR3 SINE MIR 68 178 -30 10383 193 25 44 chr12 41446446 41449567 -102336888 - L1PA16 LINE L1 0 6166 2987 984 77 35 6 chr12 41449567 41449736 -102336719 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1467 159 3 97 chr12 41449737 41450045 -102336410 - AluJo SINE Alu -33 279 1 10383 193 25 44 chr12 41450045 41450619 -102335836 - L1PA16 LINE L1 -3178 2988 2555 346 302 79 16 chr12 41450928 41451054 -102335401 - MIR SINE MIR -37 225 92 2411 75 0 3 chr12 41451740 41452046 -102334409 + AluY SINE Alu 1 305 -6 310 169 52 39 chr12 41452885 41452962 -102333493 - MLT1K LTR MaLR 0 588 511 1830 165 0 16 chr12 41452987 41453330 -102333125 + AluJo SINE Alu 1 338 0 240 303 71 20 chr12 41453332 41453431 -102333024 - MLT1L LTR MaLR -117 498 395 358 280 39 68 chr12 41453506 41453713 -102332742 - MLT1L LTR MaLR -372 243 43 1520 280 158 51 chr12 41453840 41455681 -102330774 + L2 LINE L2 1202 3252 -61 1933 157 140 38 chr12 41455681 41456132 -102330323 + LTR54B LTR ERV1 1 497 -1 1520 280 158 51 chr12 41456132 41456195 -102330260 + L2 LINE L2 3252 3307 -6 339 283 75 112 chr12 41456295 41456723 -102329732 - L2 LINE L2 -1 3271 2860 495 283 96 0 chr12 41456782 41456917 -102329538 - MIR SINE MIR -8 254 97 4281 107 67 5 chr12 41456917 41457515 -102328940 - MER41B LTR ERV1 0 635 1 495 283 96 0 chr12 41457515 41457556 -102328899 - MIR SINE MIR -165 97 61 256 295 39 77 chr12 41457576 41457715 -102328740 + MIR SINE MIR 64 194 -68 2075 129 14 0 chr12 41457715 41458010 -102328445 + AluSx SINE Alu 1 299 -13 256 295 39 77 chr12 41458010 41458077 -102328378 + MIR SINE MIR 194 262 0 913 276 70 48 chr12 41458467 41458969 -102327486 - L1MC4a LINE L1 -109 6012 5500 350 127 0 0 chr12 41459024 41459079 -102327376 - Tigger7 DNA MER2_type -2364 123 69 * 392 191 15 0 chr12 41459076 41459144 -102327311 + Tigger7 DNA MER2_type 25 93 -612 287 246 16 0 chr12 41459137 41459198 -102327257 - Tigger7 DNA MER2_type -268 71 10 * 430 286 133 31 chr12 41459305 41459560 -102326895 - L1MC4a LINE L1 -760 5386 5106 1922 158 0 0 chr12 41459755 41460068 -102326387 - AluJb SINE Alu 0 313 1 268 235 25 34 chr12 41460201 41460320 -102326135 - L1MC4a LINE L1 -1439 4707 4590 277 277 68 40 chr12 41460381 41460529 -102325926 - MLT1I LTR MaLR -2 407 256 328 296 41 41 chr12 41460561 41460733 -102325722 + MLT1I LTR MaLR 38 209 -200 241 260 0 27 chr12 41460861 41460934 -102325521 + MLT1I LTR MaLR 334 404 -5 241 273 30 0 chr12 41461356 41461422 -102325033 - L1MC4 LINE L1 -1339 6703 6636 698 283 39 0 chr12 41462730 41462960 -102323495 + L2 LINE L2 1271 1509 -1805 992 222 5 5 chr12 41462983 41463181 -102323274 + MER3 DNA MER1_type 8 205 -4 281 207 17 0 chr12 41463132 41463190 -102323265 - MER3 DNA MER1_type -108 101 43 * 454 229 84 28 chr12 41463193 41463372 -102323083 - L2 LINE L2 -1524 1790 1602 5294 138 9 1 chr12 41463375 41464180 -102322275 + L1PA15 LINE L1 5348 6158 -7 198 0 0 0 chr12 41464183 41464205 -102322250 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 207 0 0 0 chr12 41464212 41464235 -102322220 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 753 181 216 0 chr12 41464309 41464480 -102321975 - MER3 DNA MER1_type -1 208 1 3448 248 102 34 chr12 41464538 41464653 -102321802 - HAL1 LINE L1 -4 2503 2397 2287 83 0 26 chr12 41464653 41464955 -102321500 - AluY SINE Alu -17 294 1 3448 248 102 34 chr12 41464955 41465903 -102320552 - HAL1 LINE L1 -110 2397 1324 2201 113 0 3 chr12 41465903 41466203 -102320252 - AluSx SINE Alu -13 299 1 3448 248 102 34 chr12 41466203 41466513 -102319942 - HAL1 LINE L1 -1183 1324 1036 728 251 175 21 chr12 41466547 41466878 -102319577 - HAL1 LINE L1 -2123 384 3 544 237 65 27 chr12 41466882 41467068 -102319387 + L2 LINE L2 1822 2014 -1300 189 0 0 0 chr12 41467084 41467105 -102319350 + (TC)n Simple_repeat Simple_repeat 2 22 0 616 180 49 0 chr12 41467123 41467245 -102319210 - L1ME2 LINE L1 -1 6163 6036 695 198 55 92 chr12 41467245 41467403 -102319052 + L2 LINE L2 2067 2215 -1099 1107 209 141 0 chr12 41467403 41467686 -102318769 + MER33 DNA MER1_type 1 323 -1 695 198 55 92 chr12 41467686 41467765 -102318690 + L2 LINE L2 2215 2295 -1019 2509 112 14 16 chr12 41467765 41468132 -102318323 + L1PA16 LINE L1 5800 6165 -1 2944 80 2 52 chr12 41468197 41468623 -102317832 + MLT2A1 LTR ERVL 5 409 -35 810 68 0 0 chr12 41468656 41468759 -102317696 - MLT2A2 LTR ERVL -346 107 5 631 101 9 37 chr12 41468821 41468919 -102317536 - L1PA16 LINE L1 0 6166 6070 259 24 0 48 chr12 41468919 41468961 -102317494 + (TA)n Simple_repeat Simple_repeat 2 41 0 304 0 0 0 chr12 41468971 41469004 -102317451 + MLT2A1 LTR ERVL 412 444 0 1176 310 85 19 chr12 41469018 41469593 -102316862 + L2 LINE L2 2288 2900 -414 1873 180 0 0 chr12 41469597 41469902 -102316553 - AluJb SINE Alu -7 305 1 1480 135 5 0 chr12 41470064 41470272 -102316183 - MER2 DNA MER2_type -135 210 2 466 121 0 33 chr12 41470865 41470956 -102315499 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 284 237 53 53 chr12 41471252 41471328 -102315127 - L2 LINE L2 0 3272 3197 681 211 21 0 chr12 41471332 41471474 -102314981 + MLT2B1 LTR ERVL 3 147 -373 394 141 24 82 chr12 41471849 41471934 -102314521 - MSTC LTR MaLR -1 427 348 763 177 127 6 chr12 41471934 41472092 -102314363 + MER46A DNA MER2_type 1 177 -59 244 333 0 38 chr12 41472395 41472500 -102313955 - MIR SINE MIR -63 145 45 360 271 119 30 chr12 41472984 41473210 -102313245 - MIR SINE MIR -7 255 10 1561 98 18 27 chr12 41473301 41473525 -102312930 + AluSg/x SINE Alu 73 294 -16 503 195 102 16 chr12 41473998 41474126 -102312329 - MER58A DNA MER1_type 0 139 1 1092 216 191 19 chr12 41474388 41474707 -102311748 - MLT1A2 LTR MaLR 0 374 1 2309 109 3 0 chr12 41475170 41475472 -102310983 + AluSx SINE Alu 1 303 -9 2011 154 0 3 chr12 41475475 41475773 -102310682 + AluJb SINE Alu 1 297 -15 614 202 10 0 chr12 41475776 41475880 -102310575 + AluJo/FRAM SINE Alu 181 285 -27 31 0 0 0 chr12 41475884 41475915 -102310540 + AT_rich Low_complexity Low_complexity 1 31 0 399 257 203 31 chr12 41476157 41476369 -102310086 - MIR SINE MIR 0 262 9 866 207 62 6 chr12 41476369 41476548 -102309907 + MER5A DNA MER1_type 1 189 0 1518 102 0 0 chr12 41477232 41477428 -102309027 + AluSg SINE Alu 2 197 -113 823 123 0 0 chr12 41477479 41477593 -102308862 - AluSp/q SINE Alu -6 307 194 3277 138 52 32 chr12 41477593 41478338 -102308117 - L1MA4 LINE L1 -14 6286 5459 2361 98 0 3 chr12 41478544 41478849 -102307606 + AluY SINE Alu 1 304 -7 452 214 8 43 chr12 41479310 41479427 -102307028 - L1ME1 LINE L1 0 6166 6054 * 914 229 113 102 chr12 41479421 41479980 -102306475 - L1MEc LINE L1 -4335 2061 1497 6657 43 0 0 chr12 41479982 41480730 -102305725 - L1PA5 LINE L1 -3 6151 5404 1469 85 2 6 chr12 41480730 41480970 -102305485 + L1P LINE L1 5193 5428 -723 23 33 0 0 chr12 41481926 41481956 -102304499 + AT_rich Low_complexity Low_complexity 1 30 0 386 331 18 30 chr12 41482855 41483024 -102303431 + MIR SINE MIR 29 195 -67 239 53 0 26 chr12 41483035 41483073 -102303382 + (TAA)n Simple_repeat Simple_repeat 2 38 0 920 261 54 0 chr12 41483074 41483315 -102303140 - MIR SINE MIR -8 254 1 329 258 72 10 chr12 41483327 41483424 -102303031 - MIR SINE MIR 0 262 160 1487 210 6 38 chr12 41483468 41483782 -102302673 + L1MD1 LINE L1 15 318 -6222 675 200 0 9 chr12 41483791 41483906 -102302549 + FLAM_C SINE Alu 2 115 -28 213 39 0 0 chr12 41483906 41483932 -102302523 + (GA)n Simple_repeat Simple_repeat 2 27 0 8279 190 63 70 chr12 41483932 41484585 -102301870 + L1MD1 LINE L1 317 973 -5567 243 0 0 0 chr12 41484585 41484612 -102301843 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8279 190 63 70 chr12 41484612 41485008 -102301447 + L1MD1 LINE L1 973 1370 -5170 197 33 33 0 chr12 41485008 41485038 -102301417 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8279 190 63 70 chr12 41485038 41485922 -102300533 + L1MD1 LINE L1 1370 2224 -4316 2158 130 0 0 chr12 41485922 41486214 -102300241 + AluSx SINE Alu 1 292 -20 8279 190 63 70 chr12 41486214 41487074 -102299381 + L1MD1 LINE L1 2224 3089 -3451 1505 174 44 77 chr12 41487081 41487217 -102299238 - THE1B LTR MaLR 0 364 225 2136 114 0 0 chr12 41487217 41487497 -102298958 - AluSx SINE Alu -2 310 31 1505 174 44 77 chr12 41487497 41487814 -102298641 - THE1B LTR MaLR -139 225 1 387 179 60 0 chr12 41487918 41487985 -102298470 + FLAM SINE Alu 48 118 -15 893 254 17 27 chr12 41488008 41488102 -102298353 + L1MD1 LINE L1 3233 3326 -3214 2457 71 3 0 chr12 41488102 41488396 -102298059 + AluY SINE Alu 1 295 -16 893 254 17 27 chr12 41488396 41488596 -102297859 + L1MD1 LINE L1 3326 3524 -3016 5989 126 195 92 chr12 41488605 41490141 -102296314 - pTR5 LTR ERV1 0 2438 744 2472 255 14 4 chr12 41490141 41490846 -102295609 + L1MD1 LINE L1 3520 4231 -2309 2404 60 0 35 chr12 41490904 41491120 -102295335 - L1PB1 LINE L1 -43 6108 5905 2431 71 0 0 chr12 41491120 41491416 -102295039 - AluY SINE Alu -15 296 1 2404 60 0 35 chr12 41491416 41491518 -102294937 - L1PB1 LINE L1 -246 5905 5801 * 5285 208 25 22 chr12 41491501 41492095 -102294360 + L1MD1 LINE L1 4198 4789 -1847 2107 142 3 0 chr12 41492095 41492404 -102294051 + AluSg SINE Alu 1 310 0 5285 208 25 22 chr12 41492404 41493168 -102293287 + L1MD1 LINE L1 4789 5549 -1087 2218 101 3 0 chr12 41493168 41493456 -102292999 + AluSg SINE Alu 1 289 -21 5285 208 25 22 chr12 41493456 41494341 -102292114 + L1MD1 LINE L1 5549 6449 -187 927 172 0 0 chr12 41494352 41494497 -102291958 + AluJb SINE Alu 145 289 -23 2685 113 35 0 chr12 41494567 41494940 -102291515 + L1PA11 LINE L1 5788 6173 -1 25 0 0 0 chr12 41495669 41495694 -102290761 + AT_rich Low_complexity Low_complexity 1 25 0 2033 142 0 0 chr12 41495698 41496008 -102290447 - AluSx SINE Alu 0 310 1 1543 190 21 14 chr12 41496010 41496299 -102290156 - AluJo SINE Alu -19 293 3 287 206 56 24 chr12 41496469 41496595 -102289860 + (TA)n Simple_repeat Simple_repeat 2 131 0 1747 152 22 4 chr12 41497123 41497400 -102289055 - AluJo SINE Alu -30 282 1 222 195 0 0 chr12 41497584 41497625 -102288830 + CT-rich Low_complexity Low_complexity 2 42 0 1697 93 0 52 chr12 41497651 41497899 -102288556 + AluSx SINE Alu 57 291 -21 1610 104 24 15 chr12 41497952 41498276 -102288179 + L1MA4A LINE L1 5182 5507 -743 * 30092 122 17 64 chr12 41498272 41504743 -102281712 + L1PA8 LINE L1 8 6170 -2 3203 148 38 58 chr12 41504742 41505393 -102281062 + L1MA4A LINE L1 5482 6119 -184 * 377 200 80 0 chr12 41505398 41505498 -102280957 + L1MA4A LINE L1 6194 6301 -2 292 308 43 8 chr12 41505944 41506061 -102280394 - MIR SINE MIR -108 154 34 266 321 84 32 chr12 41506165 41506355 -102280100 + MIR SINE MIR 63 262 0 1700 164 37 0 chr12 41506798 41507115 -102279340 + AluJb SINE Alu 5 331 0 245 170 64 0 chr12 41507762 41507809 -102278646 - L1MC/D LINE L1 -2069 5739 5690 6944 121 6 10 chr12 41507910 41508912 -102277543 + THE1C-int LTR MaLR 583 1580 0 2627 111 25 5 chr12 41508912 41509280 -102277175 + THE1C LTR MaLR 1 375 0 702 256 40 48 chr12 41509418 41509530 -102276925 - MIR SINE MIR -6 256 145 2284 101 0 0 chr12 41509530 41509851 -102276604 - AluY SINE Alu 0 321 1 702 256 40 48 chr12 41509851 41509963 -102276492 - MIR SINE MIR -117 145 32 955 117 0 0 chr12 41510763 41510891 -102275564 - MLT2A2 LTR ERVL 0 453 326 6599 111 74 16 chr12 41510892 41511914 -102274541 - THE1B-int LTR MaLR -498 1082 1 1090 143 0 0 chr12 41511914 41512068 -102274387 - THE1B LTR MaLR 0 364 211 25 31 0 0 chr12 41512068 41512100 -102274355 + AT_rich Low_complexity Low_complexity 1 32 0 10544 62 2 2 chr12 41512100 41514306 -102272149 - L1PA5 LINE L1 0 6154 3950 278 309 103 29 chr12 41514753 41514889 -102271566 - MIR SINE MIR -33 229 84 260 309 209 15 chr12 41515298 41515628 -102270827 + MLT1L LTR MaLR 214 607 -8 363 299 152 15 chr12 41515683 41515880 -102270575 + L3b LINE CR1 1345 1568 -15 24 0 0 0 chr12 41516209 41516233 -102270222 + AT_rich Low_complexity Low_complexity 1 24 0 4447 31 2 16 chr12 41516561 41517111 -102269344 - L1PA4 LINE L1 -1 6154 5613 219 341 30 78 chr12 41517490 41517657 -102268798 - L2 LINE L2 -213 3059 2901 1150 249 114 27 chr12 41518023 41518472 -102267983 + L2 LINE L2 1959 2446 -868 1451 207 84 53 chr12 41519188 41519618 -102266837 + LTR47B LTR ERVL 1 443 0 441 261 137 38 chr12 41519634 41519845 -102266610 + MIR SINE MIR 31 262 0 28857 111 10 21 chr12 41521599 41527876 -102258579 - L1PA7 LINE L1 0 6469 163 200 305 84 38 chr12 41527931 41528062 -102258393 - MIR3 SINE MIR -63 145 9 21 36 0 0 chr12 41528425 41528453 -102258002 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 41528606 41528628 -102257827 + AT_rich Low_complexity Low_complexity 1 22 0 467 158 0 12 chr12 41529344 41529426 -102257029 + MER63 DNA MER1_type 40 746 -316 392 293 8 8 chr12 41529712 41529845 -102256610 + LTR67 LTR ERVL 418 550 -7 553 183 32 40 chr12 41529855 41529981 -102256474 - MIR SINE MIR -75 187 63 496 318 20 5 chr12 41530619 41530817 -102255638 - LTR67 LTR ERVL -1 556 356 263 279 0 0 chr12 41530970 41531031 -102255424 - LTR67 LTR ERVL -383 174 114 749 292 80 26 chr12 41531496 41531883 -102254572 + MLT1J2 LTR MaLR 13 420 -30 242 302 0 0 chr12 41532795 41532858 -102253597 + MER82 DNA MER2_type 14 76 -577 400 294 44 22 chr12 41532931 41533111 -102253344 - MIR SINE MIR -75 187 4 970 243 5 5 chr12 41533151 41533357 -102253098 + MER82 DNA MER2_type 448 653 0 384 22 0 0 chr12 41533427 41533472 -102252983 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 210 266 32 96 chr12 41535112 41535206 -102251249 - MIR SINE MIR -56 206 119 1326 216 78 49 chr12 41535246 41535696 -102250759 + MLT1C LTR MaLR 1 463 -4 481 275 28 9 chr12 41536108 41536283 -102250172 - MER77 LTR ERV1 -179 426 247 2326 110 41 14 chr12 41536321 41536686 -102249769 - THE1C LTR MaLR 0 375 1 1268 240 54 93 chr12 41537401 41538101 -102248354 - MER21B LTR ERV1 -162 701 29 1995 137 0 0 chr12 41538262 41538567 -102247888 - AluSc SINE Alu 0 305 1 232 307 184 0 chr12 41540724 41540838 -102245617 + MIR SINE MIR 128 262 0 438 309 83 20 chr12 41541423 41541915 -102244540 + L1ME4a LINE L1 4506 5028 -1118 2328 73 36 10 chr12 41541929 41542231 -102244224 + AluY SINE Alu 1 310 -1 251 285 33 46 chr12 41542461 41542729 -102243726 + L1ME4a LINE L1 5266 5473 -691 348 268 45 68 chr12 41542808 41543028 -102243427 + L1ME4a LINE L1 5727 5941 -180 1209 193 33 96 chr12 41544662 41545056 -102241399 + LTR8 LTR ERV1 1 369 -322 16118 190 17 32 chr12 41545056 41545816 -102240639 - L1PA15-16 LINE L1 -1235 5614 4844 2174 19 4 4 chr12 41545816 41546075 -102240380 - L1PA2 LINE L1 -7 6148 5890 16118 190 17 32 chr12 41546075 41551025 -102235430 - L1PA15-16 LINE L1 -2005 4844 1 511 347 16 41 chr12 41551793 41552038 -102234417 + MIR SINE MIR 3 241 -21 2382 137 3 3 chr12 41552223 41552560 -102233895 - MER1B DNA MER1_type 0 337 1 180 77 0 0 chr12 41552606 41552632 -102233823 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 837 223 135 63 chr12 41552753 41553184 -102233271 - MLT1H LTR MaLR -15 534 73 2318 59 3 3 chr12 41553879 41554165 -102232290 - AluY SINE Alu -10 301 16 2691 93 11 16 chr12 41554566 41554943 -102231512 - THE1C LTR MaLR 0 375 1 803 185 15 0 chr12 41555611 41555741 -102230714 - FLAM_C SINE Alu -11 132 1 1961 121 7 0 chr12 41556349 41556621 -102229834 + AluSx SINE Alu 34 307 -5 25 31 0 0 chr12 41556624 41556656 -102229799 + AT_rich Low_complexity Low_complexity 1 32 0 186 150 0 0 chr12 41556774 41556814 -102229641 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 961 255 43 18 chr12 41557293 41557575 -102228880 + MER67C LTR ERV1 37 325 -385 1980 173 24 0 chr12 41558009 41558338 -102228117 + MER1B DNA MER1_type 1 337 0 15421 101 1 0 chr12 41558462 41561511 -102224944 + L1PA7 LINE L1 3088 6143 -11 34 0 0 0 chr12 41561511 41561545 -102224910 + AT_rich Low_complexity Low_complexity 1 34 0 2008 215 65 18 chr12 41562359 41563024 -102223431 - L1MEc LINE L1 -4001 2395 1700 * 3202 230 91 57 chr12 41563010 41564072 -102222383 - L1MEc LINE L1 -4913 1483 344 336 24 0 0 chr12 41564072 41564113 -102222342 + (TC)n Simple_repeat Simple_repeat 1 41 0 3202 230 91 57 chr12 41564113 41564434 -102222021 - L1MEc LINE L1 -6052 344 35 295 206 15 0 chr12 41564442 41564510 -102221945 - MER94 DNA DNA -65 69 1 250 255 102 10 chr12 41565507 41565605 -102220850 - MLT1K LTR MaLR -28 560 454 297 0 0 0 chr12 41565641 41565674 -102220781 + (TG)n Simple_repeat Simple_repeat 2 34 0 296 297 117 8 chr12 41565815 41565943 -102220512 - MLT1K LTR MaLR -374 214 73 488 220 73 61 chr12 41566489 41566694 -102219761 - MIR SINE MIR 0 262 3 220 290 0 16 chr12 41567087 41567149 -102219306 - L2 LINE L2 -212 3060 3000 1624 88 9 4 chr12 41567155 41567382 -102219073 + THE1B LTR MaLR 1 228 -136 27089 86 12 4 chr12 41567384 41571311 -102215144 + L1P LINE L1 1 3960 -2186 369 253 67 13 chr12 41572075 41572225 -102214230 - L1ME4a LINE L1 -2 6119 5962 1848 161 0 23 chr12 41572834 41573144 -102213311 + AluJb SINE Alu 1 303 -9 274 328 16 70 chr12 41573165 41573351 -102213104 - MIR SINE MIR -19 243 68 180 0 0 0 chr12 41573937 41573957 -102212498 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4702 96 42 1 chr12 41573963 41574653 -102211802 - L1PB1 LINE L1 -8 6143 5426 2126 216 81 14 chr12 41575162 41575670 -102210785 - MLT1F LTR MaLR 0 542 1 3701 106 0 4 chr12 41576539 41577051 -102209404 + MER9 LTR ERVK 2 511 0 4273 75 2 18 chr12 41577051 41577653 -102208802 + HERVK9 LTR ERVK 1 592 -5324 11623 66 2 0 chr12 41577653 41579169 -102207286 + HERVK9 LTR ERVK 1268 2786 -3130 14205 76 7 1 chr12 41579169 41581081 -102205374 + HERVK9 LTR ERVK 3711 5634 -282 2174 75 0 0 chr12 41581174 41581456 -102204999 + HERVK9 LTR ERVK 5635 5916 0 3577 116 2 4 chr12 41581456 41581967 -102204488 + MER9 LTR ERVK 1 510 -1 222 91 0 0 chr12 41582314 41582347 -102204108 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 269 45 0 chr12 41583119 41583186 -102203269 - MIR SINE MIR -98 164 95 486 246 32 0 chr12 41583320 41583446 -102203009 + MER69 DNA AcHobo 1 130 -2396 267 163 0 0 chr12 41583476 41583525 -102202930 + MER69 DNA AcHobo 2477 2525 -1 * 918 288 19 29 chr12 41583525 41583823 -102202632 + MLT1J LTR MaLR 46 340 -171 4368 210 34 62 chr12 41583825 41584278 -102202177 - L1ME4a LINE L1 -440 5802 5338 1646 110 4 61 chr12 41584278 41584541 -102201914 - AluJb SINE Alu -1 311 64 4368 210 34 62 chr12 41584541 41585204 -102201251 - L1ME4a LINE L1 -904 5338 4658 1858 172 0 11 chr12 41585204 41585489 -102200966 - AluJb SINE Alu -30 282 1 4368 210 34 62 chr12 41585489 41585807 -102200648 - L1ME4a LINE L1 -1584 4658 4333 1975 127 0 11 chr12 41585807 41586114 -102200341 - AluY SINE Alu 0 304 1 4368 210 34 62 chr12 41586114 41586805 -102199650 - L1ME4a LINE L1 -1909 4333 3711 825 84 34 34 chr12 41586818 41586997 -102199458 + CT-rich Low_complexity Low_complexity 1 179 0 1604 244 42 9 chr12 41586997 41587574 -102198881 - L1ME4a LINE L1 -2452 3694 3099 2001 143 14 14 chr12 41587574 41587905 -102198550 - Tigger1 DNA MER2_type 0 2418 2085 2388 74 0 3 chr12 41587905 41588215 -102198240 - AluY SINE Alu -2 309 1 2001 143 14 14 chr12 41588215 41588240 -102198215 - Tigger1 DNA MER2_type -332 2086 2062 12924 178 22 16 chr12 41588243 41589280 -102197175 - L1MA4A LINE L1 -2 7003 5974 1686 123 0 0 chr12 41589280 41589507 -102196948 - AluSq SINE Alu -8 305 79 12924 178 22 16 chr12 41589507 41592371 -102194084 - L1MA4A LINE L1 -1031 5974 3077 40712 36 22 1 chr12 41592377 41598401 -102188054 - L1PA3 LINE L1 0 6155 2 228 187 67 13 chr12 41598402 41598477 -102187978 - L1MA4A LINE L1 -3764 3084 3006 12153 173 70 11 chr12 41598484 41598927 -102187528 - L1MA4A LINE L1 -3945 2904 2488 2021 133 0 13 chr12 41598927 41599275 -102187180 + AluSx SINE Alu 1 312 0 12153 173 70 11 chr12 41599275 41601293 -102185162 - L1MA4A LINE L1 -4361 2488 299 1190 100 0 83 chr12 41601295 41601525 -102184930 - Tigger1 DNA MER2_type -504 1914 1704 2230 177 10 0 chr12 41601530 41601925 -102184530 - L1MA4A LINE L1 -6448 401 3 5020 83 18 0 chr12 41601926 41602638 -102183817 - Tigger1 DNA MER2_type -331 2087 1363 4082 171 12 4 chr12 41602637 41603380 -102183075 - Tigger1 DNA MER2_type -1669 749 1 * 939 230 99 9 chr12 41603383 41603726 -102182729 - L1M4 LINE L1 -3049 3097 2724 258 180 0 0 chr12 41603752 41603813 -102182642 + (TA)n Simple_repeat Simple_repeat 1 61 0 2088 146 7 0 chr12 41603825 41604127 -102182328 - AluSx SINE Alu -8 304 1 935 206 5 0 chr12 41604127 41604346 -102182109 - L1M4 LINE L1 -3461 2685 2466 34 24 0 0 chr12 41604716 41604757 -102181698 + AT_rich Low_complexity Low_complexity 1 41 0 222 233 14 27 chr12 41604923 41604996 -102181459 + CT-rich Low_complexity Low_complexity 2 73 0 309 367 8 0 chr12 41605331 41605459 -102180996 - L2 LINE L2 -685 2629 2501 265 384 45 40 chr12 41605465 41605689 -102180766 + L2 LINE L2 3001 3225 -47 2524 51 3 0 chr12 41606222 41606517 -102179938 - AluY SINE Alu -14 297 2 269 391 25 19 chr12 41607806 41607967 -102178488 - MIR SINE MIR -90 172 11 1704 161 29 66 chr12 41608000 41608219 -102178236 - MLT1A1 LTR MaLR 0 365 164 2284 99 0 10 chr12 41608219 41608531 -102177924 - AluSg SINE Alu -1 309 1 1704 161 29 66 chr12 41608531 41608690 -102177765 - MLT1A1 LTR MaLR -201 164 1 2471 58 0 7 chr12 41609267 41609577 -102176878 + AluY SINE Alu 1 308 -3 1562 142 158 28 chr12 41611652 41611975 -102174480 - MLT1A1 LTR MaLR 0 365 1 230 309 25 25 chr12 41613703 41613784 -102172671 + MIR SINE MIR 17 97 -111 280 156 294 28 chr12 41613787 41613896 -102172559 - MER53 DNA DNA -1 188 51 1018 212 27 46 chr12 41615713 41615972 -102170483 + MLT1A1 LTR MaLR 14 267 -98 2288 196 39 83 chr12 41615972 41616537 -102169918 + MLT-int LTR MaLR 355 894 -841 * 2445 238 78 0 chr12 41616532 41617071 -102169384 + MLT1A2-int LTR MaLR 1155 1735 0 299 200 0 0 chr12 41617071 41617121 -102169334 + MLT1A2 LTR MaLR 1 50 -346 7374 196 83 4 chr12 41617135 41618580 -102167875 - MLT1A1-int LTR MaLR -91 1560 2 2792 153 14 2 chr12 41618581 41619007 -102167448 - MSTB1 LTR MaLR 0 432 2 705 210 81 27 chr12 41619077 41619263 -102167192 + MLT1A2 LTR MaLR 179 374 0 302 267 86 26 chr12 41619866 41619982 -102166473 - L2 LINE L2 -14 3258 3136 498 274 206 16 chr12 41620024 41620276 -102166179 - MLT1J2 LTR MaLR 0 450 151 288 0 0 0 chr12 41620470 41620502 -102165953 + (TG)n Simple_repeat Simple_repeat 1 32 0 310 360 15 22 chr12 41620515 41620651 -102165804 - L2 LINE L2 -213 3059 2925 314 313 19 44 chr12 41620664 41620824 -102165631 - L2 LINE L2 0 3313 3158 224 313 100 44 chr12 41621001 41621161 -102165294 - L2 LINE L2 -584 2730 2562 1596 171 42 66 chr12 41621631 41621801 -102164654 + MLT1A2 LTR MaLR 2 175 -199 2417 89 0 6 chr12 41621801 41622116 -102164339 + AluSq SINE Alu 1 313 0 1596 171 42 66 chr12 41622116 41622325 -102164130 + MLT1A2 LTR MaLR 175 372 -2 3065 177 128 7 chr12 41622325 41622935 -102163520 + MLT1A2-int LTR MaLR 2 685 -1050 335 219 0 0 chr12 41623059 41623123 -102163332 + MLT1A2-int LTR MaLR 679 742 -993 928 177 86 65 chr12 41623213 41623445 -102163010 - LTR8A LTR ERV1 -2 725 489 1506 156 3 62 chr12 41623445 41623733 -102162722 - MLT-int LTR MaLR -148 1587 1317 2399 117 19 35 chr12 41623887 41624255 -102162200 + THE1B LTR MaLR 1 362 -2 12234 103 5 4 chr12 41624257 41625835 -102160620 + THE1B-int LTR MaLR 1 1580 0 2299 128 22 35 chr12 41625836 41626204 -102160251 + THE1B LTR MaLR 2 364 0 820 120 24 0 chr12 41626209 41626334 -102160121 + MLT1A2-int LTR MaLR 1488 1615 -120 707 215 73 49 chr12 41626635 41626840 -102159615 - MER63A DNA MER1_type 0 210 1 372 317 5 43 chr12 41626947 41627133 -102159322 + MIR SINE MIR 84 262 0 421 279 110 7 chr12 41627190 41627326 -102159129 - MIR SINE MIR -93 169 20 2536 51 3 0 chr12 41628715 41629011 -102157444 - AluY SINE Alu -13 298 2 1270 223 234 35 chr12 41629533 41630079 -102156376 + L1MC4a LINE L1 5366 6020 -1788 866 238 142 23 chr12 41630096 41630749 -102155706 - L1MD3 LINE L1 -3 7992 7240 1906 168 18 15 chr12 41630812 41631140 -102155315 + MSTB LTR MaLR 1 329 -97 1420 237 92 3 chr12 41631140 41631486 -102154969 + L1MC4 LINE L1 6567 6943 -1099 653 80 45 0 chr12 41631509 41631597 -102154858 + MSTA LTR MaLR 334 425 -3 2489 208 62 6 chr12 41631600 41632128 -102154327 - L1MC4 LINE L1 -1026 7016 6459 209 182 0 0 chr12 41632419 41632452 -102154003 + polypurine Low_complexity Low_complexity 2 34 0 599 262 92 86 chr12 41632749 41632940 -102153515 + L1MC4 LINE L1 6414 6602 -1440 2445 82 10 0 chr12 41632940 41633246 -102153209 + AluY SINE Alu 1 309 -2 599 262 92 86 chr12 41633246 41633808 -102152647 + L1MC4 LINE L1 6602 7159 -883 2188 122 0 0 chr12 41633808 41634102 -102152353 - AluSg SINE Alu -16 294 1 599 262 92 86 chr12 41634102 41634543 -102151912 + L1MC4 LINE L1 7159 7524 -518 2668 143 33 21 chr12 41634543 41634964 -102151491 - MSTA LTR MaLR -2 426 1 599 262 92 86 chr12 41634964 41635267 -102151188 + L1MC4 LINE L1 7524 7824 -218 2403 91 3 0 chr12 41635386 41635693 -102150762 - AluSp SINE Alu -5 308 1 2171 113 17 0 chr12 41635693 41635985 -102150470 - AluSq SINE Alu -15 298 1 1377 144 35 31 chr12 41636150 41636407 -102150048 - L1MC1 LINE L1 0 6333 6076 450 259 0 28 chr12 41636443 41636551 -102149904 - L2 LINE L2 -9 3304 3200 22 0 0 0 chr12 41637915 41637937 -102148518 + AT_rich Low_complexity Low_complexity 1 22 0 2084 106 3 40 chr12 41638290 41638591 -102147864 + AluSq SINE Alu 1 290 -23 26 0 0 0 chr12 41638594 41638620 -102147835 + AT_rich Low_complexity Low_complexity 1 26 0 468 229 9 0 chr12 41638713 41638818 -102147637 + MIR SINE MIR 96 201 -61 300 277 21 43 chr12 41640435 41640529 -102145926 - L2 LINE L2 -2 3270 3179 421 297 58 14 chr12 41640674 41640812 -102145643 + MIR3 SINE MIR 33 176 -32 210 313 27 27 chr12 41640923 41641035 -102145420 - MIR SINE MIR -75 187 76 355 250 92 92 chr12 41641136 41641364 -102145091 - MIR SINE MIR -7 255 28 298 230 185 22 chr12 41642308 41642443 -102144012 - MIR3 SINE MIR -15 193 37 2015 68 0 4 chr12 41642799 41643048 -102143407 + AluY SINE Alu 60 307 -4 272 284 122 14 chr12 41643098 41643246 -102143209 - L1MC4a LINE L1 -1899 5909 5746 375 288 43 113 chr12 41643746 41644003 -102142452 - L2 LINE L2 -2 3270 3032 2195 110 27 3 chr12 41644267 41644567 -102141888 - AluSx SINE Alu -5 307 1 192 125 0 0 chr12 41644899 41644931 -102141524 + (GGA)n Simple_repeat Simple_repeat 1 32 0 291 203 0 0 chr12 41645083 41645147 -102141308 + GA-rich Low_complexity Low_complexity 2 65 0 612 265 124 8 chr12 41645777 41646011 -102140444 + MIR SINE MIR 2 262 0 2979 267 140 44 chr12 41646029 41647398 -102139057 + L2 LINE L2 1559 3121 -192 2088 122 10 13 chr12 41647398 41647701 -102138754 + AluSx SINE Alu 1 302 -10 2979 267 140 44 chr12 41647701 41647915 -102138540 + L2 LINE L2 3121 3313 0 1750 140 33 0 chr12 41648268 41648539 -102137916 + AluJb SINE Alu 1 280 -32 503 242 74 19 chr12 41649725 41649748 -102136707 - Charlie7 DNA MER1_type 0 2612 2592 913 85 78 16 chr12 41649748 41649877 -102136578 + MER85 DNA T2_type 1 137 -2 503 242 74 19 chr12 41649877 41650068 -102136387 - Charlie7 DNA MER1_type -20 2592 2386 1689 235 109 59 chr12 41650090 41650788 -102135667 - Charlie7 DNA MER1_type -1873 739 7 395 248 45 15 chr12 41650851 41650984 -102135471 + MER113 DNA MER1_type? 8 144 -377 2405 91 0 0 chr12 41651335 41651644 -102134811 - AluY SINE Alu -2 309 1 280 208 52 39 chr12 41652111 41652188 -102134267 + MLT1H LTR MaLR 156 233 -316 321 263 0 59 chr12 41652193 41652311 -102134144 + CT-rich Low_complexity Low_complexity 5 115 0 591 238 41 23 chr12 41652430 41652602 -102133853 + MLT1H LTR MaLR 375 549 0 908 61 9 0 chr12 41652692 41652807 -102133648 - L1MA2 LINE L1 0 6304 6189 23 33 0 0 chr12 41653827 41653857 -102132598 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr12 41654960 41654981 -102131474 + (TAGGG)n Simple_repeat Simple_repeat 3 23 0 280 271 116 47 chr12 41654989 41655118 -102131337 - L2 LINE L2 -1 3312 3175 459 276 136 4 chr12 41655707 41655847 -102130608 + MIR SINE MIR 5 125 -137 2063 128 73 73 chr12 41655847 41656231 -102130224 + MLT1B LTR MaLR 4 387 -3 459 276 136 4 chr12 41656231 41656318 -102130137 + MIR SINE MIR 125 262 0 955 266 91 63 chr12 41657284 41657746 -102128709 + MLT1H LTR MaLR 75 549 0 6215 181 40 14 chr12 41657757 41659962 -102126493 + L1MB7 LINE L1 3907 6172 -12 2087 115 0 7 chr12 41659962 41660258 -102126197 - AluSx SINE Alu -6 306 13 369 185 0 0 chr12 41660298 41660363 -102126092 + MER41A LTR ERV1 398 462 -92 2152 126 0 0 chr12 41661270 41661564 -102124891 - AluSx SINE Alu -14 298 5 568 163 0 0 chr12 41662079 41662177 -102124278 + L1MA4 LINE L1 6197 6294 -6 2108 175 11 6 chr12 41662274 41662628 -102123827 + MLT1A1 LTR MaLR 10 365 0 845 301 42 0 chr12 41662821 41663060 -102123395 + MIR SINE MIR 14 262 0 1654 242 114 31 chr12 41663846 41664388 -102122067 + MLT1E LTR MaLR 3 589 -4 219 402 40 11 chr12 41664544 41664718 -102121737 + MIR SINE MIR 34 212 -50 24 67 0 0 chr12 41664752 41664797 -102121658 + AT_rich Low_complexity Low_complexity 1 45 0 974 161 67 17 chr12 41665352 41665532 -102120923 - MER53 DNA DNA 0 189 1 405 200 186 35 chr12 41665743 41665888 -102120567 - MER21B LTR ERV1 -1 862 696 1999 129 3 3 chr12 41665889 41666176 -102120279 + AluJb SINE Alu 1 287 -25 830 266 59 46 chr12 41666386 41666555 -102119900 + MLT1J LTR MaLR 1 177 -334 1819 138 37 34 chr12 41666555 41666851 -102119604 + AluSx SINE Alu 1 297 -15 830 266 59 46 chr12 41666851 41666985 -102119470 + MLT1J LTR MaLR 177 308 -203 479 241 85 39 chr12 41667095 41667184 -102119271 - MLT1J LTR MaLR -297 176 93 2329 63 0 10 chr12 41667184 41667483 -102118972 + AluY SINE Alu 1 296 -15 479 241 85 39 chr12 41667483 41667573 -102118882 - MLT1J LTR MaLR -380 93 3 190 81 54 0 chr12 41667785 41667822 -102118633 + (TTAAA)n Simple_repeat Simple_repeat 1 39 0 546 71 0 59 chr12 41671370 41671455 -102115000 - MADE1 DNA Mariner 0 80 1 180 321 18 18 chr12 41672530 41672586 -102113869 + MIR SINE MIR 32 87 -121 288 0 0 0 chr12 41672711 41672743 -102113712 + (CA)n Simple_repeat Simple_repeat 1 32 0 252 338 103 14 chr12 41672916 41673061 -102113394 - MIR3 SINE MIR -33 175 18 419 313 45 19 chr12 41673764 41674074 -102112381 - L1ME4a LINE L1 -207 5914 5597 3367 128 68 0 chr12 41674175 41674704 -102111751 - MER61E LTR ERV1 -4 565 1 758 289 34 21 chr12 41674745 41674984 -102111471 - MIR SINE MIR -1 261 20 2195 125 3 6 chr12 41675080 41675393 -102111062 - AluSx SINE Alu 0 312 1 688 288 79 15 chr12 41675953 41676293 -102110162 - L1ME4a LINE L1 -221 5900 5539 242 253 32 11 chr12 41676333 41676428 -102110027 - L1P5 LINE L1 -688 5468 5372 2431 168 36 5 chr12 41677507 41677954 -102108501 - LOR1b LTR ERV1 0 461 1 1454 166 94 38 chr12 41678112 41678377 -102108078 - AluJo SINE Alu -22 290 11 23 0 0 0 chr12 41678676 41678699 -102107756 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 26 0 chr12 41679064 41679141 -102107314 + MER116 DNA Mariner 2 80 0 446 353 47 13 chr12 41679551 41679786 -102106669 + L3b LINE CR1 1109 1351 -232 4224 170 34 16 chr12 41680155 41680837 -102105618 - L1MB5 LINE L1 -9 6165 5463 1630 151 72 41 chr12 41680837 41681128 -102105327 - AluJb SINE Alu -12 300 1 4224 170 34 16 chr12 41681128 41681308 -102105147 - L1MB5 LINE L1 -711 5463 5288 636 247 11 55 chr12 41681423 41681605 -102104850 - MER5A DNA MER1_type -3 186 13 273 191 73 44 chr12 41681996 41682064 -102104391 - MIR SINE MIR 0 262 193 1173 141 14 0 chr12 41682065 41682278 -102104177 - L1MD3 LINE L1 0 7995 7780 3793 120 9 0 chr12 41682326 41682910 -102103545 + Tigger1 DNA MER2_type 309 897 -1521 2988 152 19 15 chr12 41682904 41683445 -102103010 + Tigger1 DNA MER2_type 1876 2418 0 * 1017 192 13 4 chr12 41683445 41683674 -102102781 - L1MD3 LINE L1 -361 7634 7404 450 187 10 1 chr12 41683674 41683761 -102102694 - MLT1F1 LTR MaLR -383 166 49 981 149 41 98 chr12 41683764 41684041 -102102414 - L1MC3 LINE L1 -687 7107 6854 578 162 38 9 chr12 41684041 41684146 -102102309 - MIR SINE MIR -45 217 110 916 214 47 12 chr12 41685389 41685628 -102100827 - MIR SINE MIR -1 261 19 2024 153 0 13 chr12 41685650 41685957 -102100498 - AluSx SINE Alu -9 303 1 200 273 23 23 chr12 41687918 41688006 -102098449 + CT-rich Low_complexity Low_complexity 5 92 0 675 276 34 46 chr12 41689018 41689066 -102097389 - MLT1F LTR MaLR -306 236 189 387 41 0 0 chr12 41689066 41689115 -102097340 + (GA)n Simple_repeat Simple_repeat 1 49 0 675 276 34 46 chr12 41689115 41689305 -102097150 - MLT1F LTR MaLR -353 189 1 263 186 98 59 chr12 41689406 41689508 -102096947 + MLT2E LTR ERVL 35 140 -488 877 230 111 0 chr12 41689860 41690086 -102096369 + MIR SINE MIR 1 251 -11 284 0 0 27 chr12 41690088 41690125 -102096330 + (TTA)n Simple_repeat Simple_repeat 2 37 0 868 333 68 51 chr12 41691270 41692099 -102094356 + L2 LINE L2 2273 3121 -151 1670 82 124 47 chr12 41692099 41692387 -102094068 - AluSx SINE Alu 0 312 5 868 333 68 51 chr12 41692387 41692542 -102093913 + L2 LINE L2 3121 3272 0 253 232 43 0 chr12 41692556 41692625 -102093830 + MIR SINE MIR 175 246 -16 1096 211 53 51 chr12 41693234 41693684 -102092771 - L1MC5 LINE L1 -95 7866 7416 1011 58 11 63 chr12 41694029 41694219 -102092236 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1919 174 7 0 chr12 41694234 41694544 -102091911 - AluSx SINE Alu 0 312 1 568 266 69 17 chr12 41695536 41695709 -102090746 + MIR SINE MIR 70 251 -11 361 367 109 27 chr12 41696199 41696346 -102090109 + L2 LINE L2 3110 3268 -4 196 268 73 106 chr12 41696317 41696563 -102089892 - L2 LINE L2 -984 2330 2093 * 442 267 62 7 chr12 41696565 41696711 -102089744 - MLT1I LTR MaLR 0 409 256 13004 213 20 27 chr12 41697389 41702513 -102083942 + L1M2 LINE L1 1 5159 -1689 432 0 0 0 chr12 41702513 41702561 -102083894 + (CA)n Simple_repeat Simple_repeat 2 49 0 13004 213 20 27 chr12 41702561 41702894 -102083561 + L1M2 LINE L1 5159 5493 -1355 1388 218 0 31 chr12 41702894 41703187 -102083268 + AluJo SINE Alu 3 286 -16 13004 213 20 27 chr12 41703187 41703825 -102082630 + L1M2 LINE L1 5493 6054 -794 1118 119 0 6 chr12 41703930 41704106 -102082349 - MSTA LTR MaLR -253 175 1 483 175 29 10 chr12 41704106 41704209 -102082246 - MLT1A1 LTR MaLR -260 105 1 292 81 81 65 chr12 41704281 41704343 -102082112 + L1MDa LINE L1 42 104 -6436 243 0 0 0 chr12 41704343 41704370 -102082085 + (TA)n Simple_repeat Simple_repeat 1 27 0 351 0 0 0 chr12 41704370 41704409 -102082046 + (CA)n Simple_repeat Simple_repeat 2 40 0 208 156 0 0 chr12 41704409 41704441 -102082014 + (TA)n Simple_repeat Simple_repeat 2 33 0 230 77 0 0 chr12 41704442 41704481 -102081974 - LTR66 LTR ERVL -174 436 398 510 276 0 0 chr12 41704481 41704796 -102081659 + (TA)n Simple_repeat Simple_repeat 1 315 0 255 274 24 0 chr12 41704797 41704881 -102081574 - L1MC4 LINE L1 -1339 6703 6618 300 311 0 0 chr12 41704892 41704982 -102081473 - L1MC4 LINE L1 -1340 6702 6613 305 333 0 0 chr12 41704987 41705077 -102081378 + L1MC4 LINE L1 6614 6703 -1339 * 338 275 0 22 chr12 41705047 41705138 -102081317 - L1MC4 LINE L1 -1339 6703 6615 504 228 0 24 chr12 41705176 41705424 -102081031 + (TA)n Simple_repeat Simple_repeat 1 241 0 225 326 0 0 chr12 41705425 41705514 -102080941 + L1MC4 LINE L1 6614 6702 -1340 262 261 14 0 chr12 41705515 41705584 -102080871 + (TA)n Simple_repeat Simple_repeat 2 71 0 310 340 0 0 chr12 41705584 41705678 -102080777 - L1MC4 LINE L1 -1335 6707 6614 450 311 2 5 chr12 41705690 41706314 -102080141 + (TA)n Simple_repeat Simple_repeat 1 621 0 3067 240 106 24 chr12 41706321 41706487 -102079968 + L1MDa LINE L1 177 328 -6212 2183 116 7 7 chr12 41706487 41706797 -102079658 - AluSq SINE Alu -3 310 1 3067 240 106 24 chr12 41706797 41707566 -102078889 + L1MDa LINE L1 328 1189 -5351 2378 109 26 13 chr12 41707567 41707951 -102078504 + L1PA13 LINE L1 5775 6163 0 13499 189 25 20 chr12 41707973 41709717 -102076738 + L1PB1 LINE L1 6 1739 -5128 333 0 0 0 chr12 41709717 41709754 -102076701 + (CA)n Simple_repeat Simple_repeat 2 38 0 13499 189 25 20 chr12 41709754 41714497 -102071958 + L1PB1 LINE L1 1739 6854 -13 204 53 35 105 chr12 41714522 41714579 -102071876 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 4741 183 91 33 chr12 41714604 41715240 -102071215 + L1MDa LINE L1 1179 1777 -4763 2186 99 0 18 chr12 41715240 41715524 -102070931 + AluSx SINE Alu 10 288 -24 4741 183 91 33 chr12 41715524 41716781 -102069674 + L1MDa LINE L1 1777 3177 -3363 1918 249 49 100 chr12 41716777 41717720 -102068735 + L1MDa LINE L1 3648 4542 -1998 * 885 117 82 0 chr12 41717781 41717952 -102068503 + L1MCa LINE L1 1153 1337 -5089 2687 121 5 3 chr12 41718049 41718438 -102068017 - MLT1B LTR MaLR 0 390 1 36 62 0 0 chr12 41718852 41718916 -102067539 + AT_rich Low_complexity Low_complexity 1 64 0 251 33 66 49 chr12 41721356 41721417 -102065038 + T-rich Low_complexity Low_complexity 3 64 0 1168 144 0 6 chr12 41721419 41721593 -102064862 - AluSg/x SINE Alu -19 293 121 1953 136 18 0 chr12 41721595 41721874 -102064581 - AluSx SINE Alu -28 284 1 1977 137 3 3 chr12 41723081 41723374 -102063081 - AluSx SINE Alu -19 293 1 283 267 47 0 chr12 41723643 41723729 -102062726 + MIR SINE MIR 173 262 0 219 318 79 0 chr12 41723982 41724045 -102062410 - L2 LINE L2 -1 3271 3204 901 251 26 52 chr12 41724118 41724521 -102061934 - MLT1A1 LTR MaLR -11 367 1 2359 107 0 0 chr12 41724784 41725092 -102061363 + AluSx SINE Alu 1 308 -4 21 71 0 0 chr12 41725290 41725332 -102061123 + AT_rich Low_complexity Low_complexity 1 42 0 1797 159 78 23 chr12 41726721 41727067 -102059388 - MLT1A1 LTR MaLR 0 365 1 378 318 142 42 chr12 41727911 41728222 -102058233 + L2 LINE L2 2931 3272 0 1906 128 11 4 chr12 41728285 41728566 -102057889 + AluSx SINE Alu 18 300 -12 464 327 16 28 chr12 41728597 41728773 -102057682 + MIR SINE MIR 1 181 -27 261 349 69 32 chr12 41728801 41729148 -102057307 + L2 LINE L2 2827 3186 -86 812 175 30 90 chr12 41730365 41730565 -102055890 + MER69 DNA AcHobo 6 193 -1033 1008 279 102 12 chr12 41730613 41730936 -102055519 + MER69 DNA AcHobo 303 654 -572 594 201 43 0 chr12 41730948 41731087 -102055368 + MER69 DNA AcHobo 2005 2149 -377 526 345 144 10 chr12 41731638 41732041 -102054414 + L2 LINE L2 2497 2953 -361 448 246 35 18 chr12 41732140 41732254 -102054201 + L2 LINE L2 3197 3312 -1 486 288 102 22 chr12 41732713 41732939 -102053516 - MIR SINE MIR -17 245 2 446 268 86 9 chr12 41733078 41733220 -102053235 - MIR SINE MIR -46 162 12 190 270 79 11 chr12 41733413 41733502 -102052953 + MIR SINE MIR 69 163 -99 1817 155 72 40 chr12 41733539 41733888 -102052567 - MLT1A1 LTR MaLR -5 360 1 238 324 46 37 chr12 41734318 41734426 -102052029 - L2 LINE L2 -8 3305 3197 527 206 12 12 chr12 41735501 41735661 -102050794 + MER113 DNA MER1_type? 12 171 -350 22 35 0 0 chr12 41735698 41735727 -102050728 + AT_rich Low_complexity Low_complexity 1 29 0 2428 46 0 3 chr12 41735754 41736061 -102050394 + AluY SINE Alu 1 306 0 243 270 27 27 chr12 41736209 41736283 -102050172 - MIR SINE MIR 0 262 189 845 280 152 55 chr12 41736388 41736738 -102049717 - L2 LINE L2 0 3313 2908 2151 90 0 75 chr12 41736738 41737060 -102049395 - AluSq SINE Alu -12 301 4 845 280 152 55 chr12 41737060 41737163 -102049292 - L2 LINE L2 -405 2908 2816 34 34 0 17 chr12 41737242 41737276 -102049179 + AT_rich Low_complexity Low_complexity 1 35 -23 1706 161 47 20 chr12 41737276 41737574 -102048881 - AluJb SINE Alu -6 306 1 34 34 0 17 chr12 41737574 41737598 -102048857 + AT_rich Low_complexity Low_complexity 35 58 0 295 360 96 13 chr12 41737949 41738188 -102048267 + L2 LINE L2 2838 3096 -176 793 186 60 12 chr12 41738264 41738431 -102048024 + MIR SINE MIR 13 187 -75 227 200 29 14 chr12 41738456 41738526 -102047929 + (TTTAA)n Simple_repeat Simple_repeat 1 71 0 189 268 0 0 chr12 41738526 41738567 -102047888 + MIR SINE MIR 222 262 0 690 175 37 38 chr12 41739179 41739375 -102047080 - MER6 DNA MER2_type 0 865 -65 2012 87 8 4 chr12 41739594 41739859 -102046596 + AluSp SINE Alu 36 301 -12 21 0 0 0 chr12 41740817 41740838 -102045617 + AT_rich Low_complexity Low_complexity 1 21 0 181 326 124 10 chr12 41742298 41742491 -102043964 - L2 LINE L2 -337 2977 2763 22 56 0 0 chr12 41742782 41742818 -102043637 + AT_rich Low_complexity Low_complexity 1 36 0 207 280 0 0 chr12 41743638 41743688 -102042767 + GA-rich Low_complexity Low_complexity 4 53 0 244 292 154 23 chr12 41744126 41744256 -102042199 - MIR SINE MIR -113 149 3 2451 89 0 3 chr12 41744807 41745120 -102041335 + AluSq SINE Alu 1 312 -1 258 297 95 20 chr12 41745332 41745480 -102040975 + L1ME3A LINE L1 5989 6147 -23 189 0 0 0 chr12 41745731 41745752 -102040703 + (A)n Simple_repeat Simple_repeat 1 21 0 680 115 0 10 chr12 41745792 41745896 -102040559 + L1PA6 LINE L1 2 104 -6042 * 31821 68 7 7 chr12 41745880 41751055 -102035400 + L1PA6 LINE L1 979 6153 -1 21 57 0 0 chr12 41751271 41751306 -102035149 + AT_rich Low_complexity Low_complexity 1 35 0 313 288 209 7 chr12 41751575 41751714 -102034741 - MIR SINE MIR -31 231 65 2064 144 52 8 chr12 41751753 41752134 -102034321 + L1MB3 LINE L1 5786 6183 0 330 273 153 3 chr12 41752140 41752422 -102034033 + L1M4 LINE L1 2976 3299 -2847 204 111 0 0 chr12 41752597 41752633 -102033822 + (A)n Simple_repeat Simple_repeat 1 36 0 421 243 54 49 chr12 41752839 41753024 -102033431 + LTR45B LTR ERV1 304 489 0 400 194 222 40 chr12 41754090 41754338 -102032117 + L1MC5 LINE L1 7639 7931 -30 245 277 46 0 chr12 41755001 41755066 -102031389 + L2 LINE L2 3246 3313 0 794 241 121 38 chr12 41756579 41756743 -102029712 + Charlie4 DNA MER1_type 1 197 -311 2255 111 0 0 chr12 41756743 41757041 -102029414 + AluSx SINE Alu 1 298 -14 794 241 121 38 chr12 41757041 41757141 -102029314 + Charlie4 DNA MER1_type 197 287 -221 700 194 113 22 chr12 41757521 41757743 -102028712 + Charlie4 DNA MER1_type 1719 1960 -1 390 42 0 0 chr12 41758176 41758224 -102028231 + (CA)n Simple_repeat Simple_repeat 2 49 0 23 33 0 0 chr12 41758580 41758610 -102027845 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 41759320 41759344 -102027111 + AT_rich Low_complexity Low_complexity 1 24 0 1533 137 8 30 chr12 41759880 41760143 -102026312 + L1PA16 LINE L1 5900 6156 -10 21 0 0 0 chr12 41760143 41760164 -102026291 + AT_rich Low_complexity Low_complexity 1 21 0 352 205 13 51 chr12 41760188 41760266 -102026189 - L2 LINE L2 -2 3311 3237 1763 172 7 0 chr12 41760994 41761279 -102025176 - AluSx SINE Alu -19 293 7 2266 104 3 3 chr12 41761406 41761714 -102024741 + AluSx SINE Alu 1 308 -4 292 287 175 0 chr12 41761830 41761973 -102024482 - MIR SINE MIR -44 218 51 23 68 0 0 chr12 41762290 41762334 -102024121 + AT_rich Low_complexity Low_complexity 1 44 0 12655 126 107 21 chr12 41762456 41763391 -102023064 - Tigger1 DNA MER2_type -9 2409 1556 2193 50 4 0 chr12 41763391 41763652 -102022803 - AluY SINE Alu -10 301 40 12655 126 107 21 chr12 41763652 41764520 -102021935 - Tigger1 DNA MER2_type -862 1556 375 2093 113 0 3 chr12 41764520 41764827 -102021628 - AluSx SINE Alu 0 306 1 12655 126 107 21 chr12 41764827 41765237 -102021218 - Tigger1 DNA MER2_type -2043 375 2 278 361 78 0 chr12 41765237 41765481 -102020974 + L1ME3A LINE L1 4030 4292 -1854 739 275 48 20 chr12 41765646 41766002 -102020453 + L1ME3A LINE L1 4561 4926 -1220 455 256 69 73 chr12 41766021 41766707 -102019748 + L1ME3A LINE L1 5006 5706 -456 181 212 45 0 chr12 41766740 41766806 -102019649 + GA-rich Low_complexity Low_complexity 4 72 0 306 282 80 28 chr12 41766806 41767019 -102019436 + L1ME3A LINE L1 5733 5956 -214 448 150 0 0 chr12 41768102 41768171 -102018284 + Tigger2 DNA MER2_type 1 69 -2649 * 2228 126 69 32 chr12 41768155 41768591 -102017864 + Tigger2 DNA MER2_type 2267 2718 0 642 225 203 0 chr12 41768918 41769105 -102017350 - MIR SINE MIR -36 226 2 510 228 63 0 chr12 41769811 41769938 -102016517 - MIR SINE MIR -65 197 63 1835 174 7 0 chr12 41770157 41770451 -102016004 - AluJb SINE Alu -9 303 8 21 0 0 0 chr12 41770562 41770583 -102015872 + AT_rich Low_complexity Low_complexity 1 21 0 233 191 0 0 chr12 41770860 41770902 -102015553 + L2 LINE L2 3272 3313 0 1191 227 151 2 chr12 41771212 41771635 -102014820 + L1ME3 LINE L1 5559 6044 -118 994 77 0 0 chr12 41771635 41771765 -102014690 - AluSg/x SINE Alu -7 303 174 435 252 43 0 chr12 41771767 41771882 -102014573 + L1ME3 LINE L1 6041 6160 -2 718 213 257 24 chr12 41772578 41772827 -102013628 + L1MD2 LINE L1 5980 6286 -73 2336 81 0 32 chr12 41773910 41774218 -102012237 + AluSc SINE Alu 1 298 -11 23 0 0 0 chr12 41774641 41774664 -102011791 + AT_rich Low_complexity Low_complexity 1 23 0 183 303 187 27 chr12 41774839 41774961 -102011494 - L2 LINE L2 -23 3290 3189 1072 183 28 19 chr12 41774961 41775174 -102011281 - MER20 DNA MER1_type 0 219 5 183 303 187 27 chr12 41775174 41775345 -102011110 - L2 LINE L2 -124 3189 2950 2463 71 0 29 chr12 41776016 41776324 -102010131 - AluSx SINE Alu -13 299 1 1318 153 38 46 chr12 41776365 41776627 -102009828 + AluJo SINE Alu 1 260 -52 528 259 58 40 chr12 41778456 41778515 -102007940 - MER5B DNA MER1_type 0 178 122 546 29 0 0 chr12 41778515 41778583 -102007872 + (TG)n Simple_repeat Simple_repeat 2 69 0 528 259 58 40 chr12 41778583 41778697 -102007758 - MER5B DNA MER1_type -56 122 2 24 32 0 0 chr12 41778892 41778923 -102007532 + AT_rich Low_complexity Low_complexity 1 31 0 1740 244 102 2 chr12 41779686 41780136 -102006319 - MLT1J LTR MaLR -14 497 3 274 253 224 24 chr12 41780240 41780410 -102006045 + MIR SINE MIR 57 260 -2 449 301 70 0 chr12 41780686 41780829 -102005626 - MIR SINE MIR -108 154 2 182 250 0 36 chr12 41782086 41782142 -102004313 - MIR SINE MIR -57 151 98 245 295 162 0 chr12 41783110 41783215 -102003240 - MIR3 SINE MIR -50 158 37 1122 288 70 19 chr12 41785170 41785645 -102000810 - L2 LINE L2 -5 3308 2810 562 271 58 38 chr12 41785708 41785948 -102000507 - MIR SINE MIR -13 249 5 1073 264 76 43 chr12 41785965 41786476 -101999979 - L2 LINE L2 -562 2752 2225 394 231 87 0 chr12 41786690 41786794 -101999661 - MIR SINE MIR -117 145 33 341 267 52 9 chr12 41786954 41787070 -101999385 + MIR SINE MIR 20 140 -68 878 218 11 0 chr12 41788932 41789111 -101997344 - MER5A DNA MER1_type -4 185 5 188 262 197 25 chr12 41789404 41789526 -101996929 - L3b LINE CR1 -124 1459 1317 298 239 14 0 chr12 41790629 41790700 -101995755 - L2 LINE L2 0 3272 3201 2395 103 22 6 chr12 41791071 41791429 -101995026 + THE1B LTR MaLR 1 364 0 478 368 13 0 chr12 41791504 41791656 -101994799 - MER91A DNA MER1_type -24 172 19 678 210 48 24 chr12 41792824 41792991 -101993464 - Charlie8 DNA MER1_type -2140 277 107 1159 238 8 4 chr12 41793931 41794187 -101992268 + MIR SINE MIR 1 257 -5 291 250 28 0 chr12 41798166 41798238 -101988217 + MIR3 SINE MIR 94 167 -41 2028 119 36 7 chr12 41798440 41798718 -101987737 - AluSx SINE Alu -26 286 1 778 252 104 9 chr12 41799274 41799504 -101986951 - MIR SINE MIR -9 253 2 270 299 65 0 chr12 41799582 41799689 -101986766 - L3 LINE CR1 -20 1557 1444 297 0 0 0 chr12 41799899 41799932 -101986523 + (CA)n Simple_repeat Simple_repeat 2 34 0 297 0 0 0 chr12 41799935 41799968 -101986487 + (GA)n Simple_repeat Simple_repeat 2 34 0 197 302 0 19 chr12 41800340 41800393 -101986062 - L2 LINE L2 -4 3309 3258 263 222 34 34 chr12 41801051 41801168 -101985287 + L2 LINE L2 2941 3057 -215 279 279 25 0 chr12 41802277 41802356 -101984099 - L2 LINE L2 -1 3312 3232 941 249 60 20 chr12 41802415 41802664 -101983791 + MIR SINE MIR 2 260 -2 2295 114 0 9 chr12 41802748 41803063 -101983392 + AluSx SINE Alu 1 312 0 2467 74 7 0 chr12 41803071 41803367 -101983088 + AluY SINE Alu 1 298 -13 240 219 27 68 chr12 41804360 41804433 -101982022 - MIR3 SINE MIR -49 159 90 1394 161 135 26 chr12 41805676 41805943 -101980512 - AluJo SINE Alu -16 296 1 339 219 140 53 chr12 41806154 41806268 -101980187 + MIR SINE MIR 65 188 -74 203 300 131 19 chr12 41807762 41807869 -101978586 - MIR SINE MIR -69 139 35 300 215 25 0 chr12 41810701 41810780 -101975675 + GA-rich Low_complexity Low_complexity 1 81 0 195 204 0 0 chr12 41811131 41811185 -101975270 + CT-rich Low_complexity Low_complexity 2 55 0 279 304 71 0 chr12 41813477 41813589 -101972866 + MIR SINE MIR 87 206 -56 228 264 114 36 chr12 41813809 41813976 -101972479 + Charlie7 DNA MER1_type 2433 2612 0 249 83 0 0 chr12 41813982 41814018 -101972437 + L2 LINE L2 3261 3296 -17 847 245 50 12 chr12 41814269 41814510 -101971945 - MIR SINE MIR -12 250 1 315 282 24 0 chr12 41814510 41814591 -101971864 + L2 LINE L2 3230 3312 -1 378 255 85 39 chr12 41814598 41814751 -101971704 + MIR SINE MIR 41 200 -62 940 264 33 0 chr12 41814763 41815005 -101971450 - MIR SINE MIR 0 262 13 619 234 114 0 chr12 41816046 41816253 -101970202 - MIR SINE MIR -23 239 1 278 365 17 0 chr12 41816980 41817095 -101969360 + L2 LINE L2 2692 2808 -506 405 331 86 0 chr12 41817599 41817877 -101968578 - L2 LINE L2 -130 3183 2882 260 309 15 0 chr12 41819075 41819143 -101967312 - MIR SINE MIR -184 78 10 308 302 21 0 chr12 41820193 41820289 -101966166 - MER117 DNA MER1_type 0 197 100 475 261 144 50 chr12 41822197 41822419 -101964036 - MIR SINE MIR -6 256 14 359 228 32 57 chr12 41822428 41822551 -101963904 - MIR3 SINE MIR -21 187 68 809 261 22 35 chr12 41824131 41824361 -101962094 + MIR SINE MIR 8 234 -28 218 250 0 17 chr12 41825396 41825456 -101960999 + (CCCCAG)n Simple_repeat Simple_repeat 6 64 0 207 221 206 15 chr12 41825596 41825664 -101960791 - MIR3 SINE MIR -29 179 99 406 310 110 0 chr12 41825710 41825865 -101960590 - MIR SINE MIR -90 172 1 333 258 41 10 chr12 41825943 41826040 -101960415 + MER103 DNA DNA 1 100 -66 952 232 29 37 chr12 41826088 41826334 -101960121 + MIR SINE MIR 13 256 -6 1108 249 12 12 chr12 41826787 41827036 -101959419 + MIR SINE MIR 14 262 0 257 264 74 81 chr12 41827219 41827367 -101959088 - L3b LINE CR1 -147 1436 1290 2124 130 0 0 chr12 41828335 41828643 -101957812 + AluSc SINE Alu 1 308 -1 725 148 0 0 chr12 41828659 41828767 -101957688 + FLAM_C SINE Alu 2 109 -34 235 307 160 33 chr12 41831746 41831896 -101954559 - MER5A DNA MER1_type -20 169 1 558 240 70 0 chr12 41832268 41832397 -101954058 - MIR SINE MIR -25 237 100 357 212 18 44 chr12 41832657 41832770 -101953685 - HAL1 LINE L1 -1029 1478 1369 770 138 0 0 chr12 41832770 41832893 -101953562 - AluSg/x SINE Alu -2 310 188 863 179 22 34 chr12 41832895 41833074 -101953381 + AluSx SINE Alu 3 179 -133 312 264 132 22 chr12 41833840 41834022 -101952433 + L2 LINE L2 2556 2757 -557 1568 118 0 111 chr12 41834128 41834294 -101952161 - AluY SINE Alu -6 295 183 414 0 0 0 chr12 41834294 41834340 -101952115 + (TA)n Simple_repeat Simple_repeat 1 46 0 1568 118 0 111 chr12 41834340 41834505 -101951950 - AluY SINE Alu -118 183 1 268 331 71 4 chr12 41834633 41834899 -101951556 - AluY SINE Alu -14 287 4 262 398 25 19 chr12 41836242 41836403 -101950052 - MIR SINE MIR -90 172 11 1744 166 29 66 chr12 41836436 41836655 -101949800 - MLT1A1 LTR MaLR 0 365 164 2175 99 0 10 chr12 41836655 41836967 -101949488 - AluSg SINE Alu -1 309 1 1744 166 29 66 chr12 41836967 41837126 -101949329 - MLT1A1 LTR MaLR -201 164 1 2371 61 0 7 chr12 41837703 41838013 -101948442 + AluY SINE Alu 1 308 -3 233 231 108 0 chr12 41839806 41839871 -101946584 + MIR SINE MIR 176 247 -15 215 163 47 0 chr12 41840644 41840687 -101945768 + (TGG)n Simple_repeat Simple_repeat 1 45 0 180 111 0 0 chr12 41840688 41840715 -101945740 + (TG)n Simple_repeat Simple_repeat 1 27 0 25 75 0 0 chr12 41842254 41842307 -101944148 + GC_rich Low_complexity Low_complexity 1 53 0 216 0 0 0 chr12 41842724 41842748 -101943707 + (CAA)n Simple_repeat Simple_repeat 2 25 0 376 322 86 11 chr12 41843734 41843908 -101942547 - MIR3 SINE MIR -13 195 9 296 260 39 0 chr12 41845634 41845711 -101940744 + MIR SINE MIR 68 147 -115 261 252 92 17 chr12 41846172 41846291 -101940164 + L2 LINE L2 1922 2049 -1265 293 252 58 58 chr12 41846378 41846517 -101939938 + MIR3 SINE MIR 58 196 -12 364 267 11 11 chr12 41846630 41846720 -101939735 - MIR3 SINE MIR -29 179 90 4630 248 58 65 chr12 41849028 41851789 -101934666 + L1ME3 LINE L1 3339 6081 -81 2112 96 4 0 chr12 41852258 41852538 -101933917 + AluSx SINE Alu 9 289 -23 210 71 0 0 chr12 41852822 41852850 -101933605 + (TA)n Simple_repeat Simple_repeat 1 28 0 2181 80 3 20 chr12 41852870 41853169 -101933286 - AluY SINE Alu -17 294 1 25 0 0 0 chr12 41853725 41853750 -101932705 + AT_rich Low_complexity Low_complexity 1 25 0 181 379 0 0 chr12 41854092 41854150 -101932305 - L2 LINE L2 -9 3263 3206 321 385 21 21 chr12 41854190 41854382 -101932073 - MIR SINE MIR -50 212 21 225 293 126 11 chr12 41855035 41855209 -101931246 - L1MC/D LINE L1 -2264 5544 5351 556 184 156 0 chr12 41855360 41855469 -101930986 + AluJb SINE Alu 2 127 -185 281 224 0 0 chr12 41855887 41855936 -101930519 + MER5B DNA MER1_type 1 49 -129 218 293 13 27 chr12 41856240 41856315 -101930140 - L2 LINE L2 -2 3270 3197 * 521 293 0 60 chr12 41856306 41856473 -101929982 + MER5B DNA MER1_type 22 178 0 1471 203 15 6 chr12 41857982 41858307 -101928148 - L1MB3 LINE L1 -1 6182 5855 325 304 30 30 chr12 41859882 41860017 -101926438 - MIR SINE MIR -3 259 125 1102 110 7 0 chr12 41860302 41860456 -101925999 + AluSq SINE Alu 1 155 -158 544 145 0 0 chr12 41860457 41860540 -101925915 + AluY SINE Alu 215 297 -14 394 241 276 6 chr12 41860761 41860931 -101925524 - MIR SINE MIR -19 243 28 329 154 44 0 chr12 41861864 41861955 -101924500 + CT-rich Low_complexity Low_complexity 2 96 0 508 252 73 8 chr12 41863255 41863378 -101923077 + L2 LINE L2 3178 3308 -5 329 292 87 38 chr12 41863479 41863664 -101922791 + MLT1K LTR MaLR 395 588 0 456 237 0 0 chr12 41863675 41863772 -101922683 - MIR SINE MIR -2 260 164 497 313 45 25 chr12 41863794 41863992 -101922463 + L3b LINE CR1 1281 1482 -101 1819 112 16 47 chr12 41865024 41865147 -101921308 - L1MB7 LINE L1 -20 6164 6039 2117 138 33 25 chr12 41865147 41865510 -101920945 - MER47A DNA MER2_type 0 366 1 1819 112 16 47 chr12 41865510 41865707 -101920748 - L1MB7 LINE L1 -145 6039 5854 1884 136 0 26 chr12 41865947 41866255 -101920200 + AluSx SINE Alu 1 300 -12 314 313 0 12 chr12 41867078 41867161 -101919294 - L2 LINE L2 -2 3311 3230 225 0 0 0 chr12 41867454 41867479 -101918976 + (A)n Simple_repeat Simple_repeat 1 25 0 595 320 7 19 chr12 41870049 41870268 -101916187 - MIR SINE MIR -4 258 43 278 258 155 52 chr12 41871725 41871919 -101914536 - MIR SINE MIR -13 249 36 288 213 67 0 chr12 41871920 41871995 -101914460 + MER116 DNA Mariner 1 80 0 2129 113 3 0 chr12 41872583 41872874 -101913581 - AluSp SINE Alu -19 294 3 227 246 154 46 chr12 41873133 41873263 -101913192 - MIR3 SINE MIR -64 144 1 2083 126 3 7 chr12 41873454 41873755 -101912700 - AluSx SINE Alu -12 300 1 25 23 0 23 chr12 41875742 41875759 -101910696 + AT_rich Low_complexity Low_complexity 1 17 -25 2180 71 27 3 chr12 41875759 41876056 -101910399 + AluY SINE Alu 1 304 -7 25 23 0 23 chr12 41876056 41876081 -101910374 + AT_rich Low_complexity Low_complexity 17 42 0 315 316 60 17 chr12 41877329 41877446 -101909009 + MIR3 SINE MIR 10 131 -77 226 275 83 64 chr12 41877901 41878010 -101908445 - L2 LINE L2 -4 3268 3158 25 51 0 0 chr12 41878096 41878135 -101908320 + AT_rich Low_complexity Low_complexity 1 39 0 534 276 127 37 chr12 41878665 41879384 -101907071 + L1MCa LINE L1 1016 1993 -4728 1225 158 9 35 chr12 41879414 41879642 -101906813 + AluJo SINE Alu 86 307 -5 1570 255 98 30 chr12 41880056 41881295 -101905160 + L1MCa LINE L1 2452 3770 -2770 1524 225 69 21 chr12 41882022 41882583 -101903872 - MER21B LTR ERV1 -156 707 19 417 213 0 12 chr12 41882605 41882685 -101903770 - MER21B LTR ERV1 -773 90 12 794 183 0 0 chr12 41882837 41882968 -101903487 + FLAM_C SINE Alu 2 132 -1 22 0 0 0 chr12 41882968 41882990 -101903465 + AT_rich Low_complexity Low_complexity 1 22 0 2203 99 7 0 chr12 41882990 41883274 -101903181 + AluSq SINE Alu 1 286 -27 291 28 0 0 chr12 41883274 41883310 -101903145 + (CATA)n Simple_repeat Simple_repeat 2 37 0 645 243 117 25 chr12 41883870 41884109 -101902346 - MIR SINE MIR -1 261 1 263 91 0 23 chr12 41884392 41884436 -101902019 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2020 135 3 0 chr12 41884438 41884735 -101901720 - AluSx SINE Alu -14 298 1 854 151 0 0 chr12 41884738 41884864 -101901591 - AluJo/FLAM SINE Alu -176 126 1 2220 100 7 0 chr12 41885310 41885599 -101900856 + AluSc SINE Alu 1 291 -18 338 266 163 35 chr12 41886105 41886308 -101900147 - MIR SINE MIR -32 230 2 432 167 0 78 chr12 41886377 41886467 -101899988 - AluSg/x SINE Alu -21 289 207 189 0 0 0 chr12 41886500 41886521 -101899934 + (A)n Simple_repeat Simple_repeat 1 21 0 309 362 35 0 chr12 41886600 41886741 -101899714 + HAL1 LINE L1 1113 1258 -1249 888 65 14 7 chr12 41886934 41887072 -101899383 + (GAA)n Simple_repeat Simple_repeat 3 141 0 2422 83 3 0 chr12 41887495 41887796 -101898659 + AluSp SINE Alu 1 302 -11 244 296 34 0 chr12 41888079 41888167 -101898288 + L1MB3 LINE L1 2378 2468 -3916 5001 67 23 3 chr12 41888322 41888962 -101897493 + SVA Other Other 733 1385 -1 990 209 0 0 chr12 41888991 41889154 -101897301 - FRAM SINE Alu -16 160 1 1413 232 125 30 chr12 41889356 41889851 -101896604 + MER34 LTR ERV1 1 542 0 978 276 135 61 chr12 41889892 41890765 -101895690 + L1MB3 LINE L1 2912 3849 -2533 847 218 123 82 chr12 41891562 41892084 -101894371 + MER34C LTR ERV1 40 582 -3 23 0 0 0 chr12 41892125 41892148 -101894307 + AT_rich Low_complexity Low_complexity 1 23 0 1507 177 69 47 chr12 41892420 41892838 -101893617 - MER67A LTR ERV1 0 661 84 2858 208 147 37 chr12 41893858 41894706 -101891749 + MSTB2-int LTR MaLR 695 1636 -15 1432 224 49 33 chr12 41894718 41895168 -101891287 + MSTB2 LTR MaLR 1 457 0 3380 192 31 7 chr12 41895169 41895987 -101890468 + L1MB3 LINE L1 4112 4948 -1434 2121 194 12 15 chr12 41895990 41896402 -101890053 + MSTB LTR MaLR 1 411 -15 527 150 0 20 chr12 41896408 41896508 -101889947 + MSTB1 LTR MaLR 329 426 -6 434 141 0 13 chr12 41896507 41896585 -101889870 + MSTB1 LTR MaLR 330 406 -26 * 5817 50 1 0 chr12 41896587 41897301 -101889154 - L1PA5 LINE L1 -2 6152 5438 250 98 24 0 chr12 41897303 41897344 -101889111 + MSTB1 LTR MaLR 387 428 0 1462 205 7 53 chr12 41897346 41897656 -101888799 + L1MB3 LINE L1 4949 5237 -1145 2120 154 29 75 chr12 41897656 41898135 -101888320 - MSTB2 LTR MaLR 0 457 1 1462 205 7 53 chr12 41898135 41898239 -101888216 + L1MB3 LINE L1 5237 5344 -1038 1606 169 10 35 chr12 41898282 41898603 -101887852 + AluJo SINE Alu 30 343 0 5968 126 40 5 chr12 41898661 41900221 -101886234 + L1MA4A LINE L1 4693 6297 -6 4058 166 39 39 chr12 41900207 41901242 -101885213 + L1MB3 LINE L1 5382 6419 0 * 1364 214 60 4 chr12 41901287 41901554 -101884901 - AluJo SINE Alu -30 282 1 314 323 91 0 chr12 41901747 41901846 -101884609 - L2 LINE L2 -27 3286 3179 889 242 107 0 chr12 41901856 41902071 -101884384 - MIR SINE MIR -10 252 15 359 297 61 45 chr12 41902126 41902372 -101884083 - L2 LINE L2 -167 3105 2856 325 263 111 50 chr12 41903102 41903290 -101883165 + MIR SINE MIR 4 204 -58 578 191 34 45 chr12 41903436 41903614 -101882841 + MER104 DNA MER2_type 2 177 -3 363 44 0 0 chr12 41904054 41904099 -101882356 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr12 41904477 41904502 -101881953 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 524 219 0 0 chr12 41904642 41904747 -101881708 - LTR40a LTR ERVL -3 516 412 301 211 132 0 chr12 41904744 41904820 -101881635 - LTR40b LTR ERVL -376 86 1 * 2447 73 0 22 chr12 41905484 41905798 -101880657 - AluY SINE Alu -4 307 1 2260 102 0 13 chr12 41905914 41906217 -101880238 - AluSx SINE Alu -13 299 1 2313 199 87 16 chr12 41906231 41906839 -101879616 - L1MC4a LINE L1 -129 7679 7029 1635 255 43 7 chr12 41906897 41907348 -101879107 + MLT2B1 LTR ERVL 1 471 -49 1983 160 18 3 chr12 41907348 41907691 -101878764 - MER7A DNA MER2_type 0 346 1 187 170 19 19 chr12 41907703 41907756 -101878699 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 442 196 98 0 chr12 41907808 41907920 -101878535 - L1MC4a LINE L1 -1481 6327 6205 866 199 55 71 chr12 41907922 41908251 -101878204 + L2 LINE L2 2699 3024 -289 2258 100 0 13 chr12 41908270 41908571 -101877884 - AluSg SINE Alu -13 297 1 280 272 107 68 chr12 41908597 41908700 -101877755 + L2 LINE L2 3194 3300 -13 557 195 0 0 chr12 41908726 41908844 -101877611 - L1MA9 LINE L1 -4 6308 6191 252 175 0 18 chr12 41909136 41909193 -101877262 + L1ME4a LINE L1 6065 6120 -1 268 279 0 96 chr12 41910371 41910507 -101875948 + MLT1L LTR MaLR 1 123 -492 1566 233 42 11 chr12 41910538 41910920 -101875535 + MSTD LTR MaLR 1 394 -2 958 222 36 8 chr12 41910920 41911172 -101875283 + MSTD-int LTR MaLR 2 260 -1475 285 200 69 35 chr12 41911197 41911342 -101875113 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 1114 238 16 32 chr12 41911365 41911548 -101874907 + MSTD-int LTR MaLR 226 403 -1332 2168 125 20 0 chr12 41911548 41911672 -101874783 + AluSx SINE Alu 1 121 -191 186 43 0 0 chr12 41911672 41911695 -101874760 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2168 125 20 0 chr12 41911695 41911866 -101874589 + AluSx SINE Alu 121 302 -10 1114 238 16 32 chr12 41911866 41911993 -101874462 + MSTD-int LTR MaLR 403 531 -1204 10791 165 97 3 chr12 41912021 41913972 -101872483 - Tigger1 DNA MER2_type 0 2418 283 864 174 275 0 chr12 41913973 41914180 -101872275 + MER7A DNA MER2_type 54 315 -31 1955 226 49 79 chr12 41914197 41914831 -101871624 + MSTD-int LTR MaLR 531 1145 -590 * 4509 174 29 22 chr12 41914829 41915821 -101870634 - L1 LINE L1 -1314 4720 3722 2436 267 74 17 chr12 41915822 41917540 -101868915 - L1 LINE L1 -4576 1389 15 216 264 100 64 chr12 41917573 41917683 -101868772 - MIR SINE MIR -140 122 9 224 209 33 44 chr12 41918791 41918882 -101867573 + (CA)n Simple_repeat Simple_repeat 2 91 0 288 237 27 59 chr12 41918934 41919120 -101867335 + (CA)n Simple_repeat Simple_repeat 1 180 0 642 312 5 15 chr12 41919122 41919321 -101867134 + L2 LINE L2 2804 3000 -313 338 286 71 45 chr12 41919450 41919562 -101866893 - MIR3 SINE MIR -9 199 85 644 263 71 13 chr12 41919572 41919796 -101866659 - L2 LINE L2 0 3313 3077 1491 139 4 17 chr12 41920969 41921199 -101865256 - AluJb SINE Alu 0 312 86 374 248 46 28 chr12 41921747 41921856 -101864599 - MIR SINE MIR -64 144 34 467 307 118 31 chr12 41922455 41922757 -101863698 + L1MC4a LINE L1 5266 5594 -632 261 0 0 0 chr12 41923411 41923440 -101863015 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 283 240 99 68 chr12 41923479 41923833 -101862622 + L1MC4a LINE L1 5592 5956 -1852 2234 95 0 0 chr12 41923859 41924143 -101862312 - AluSc SINE Alu -25 284 1 264 149 0 0 chr12 41924360 41924407 -101862048 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 1504 183 72 26 chr12 41924630 41924979 -101861476 - MLT1A1 LTR MaLR 0 365 1 2339 96 0 0 chr12 41926979 41927281 -101859174 + AluSc SINE Alu 1 302 -7 1708 204 0 38 chr12 41928237 41928551 -101857904 - AluJo SINE Alu -10 302 1 26 30 0 0 chr12 41929326 41929359 -101857096 + AT_rich Low_complexity Low_complexity 1 33 0 1968 139 0 51 chr12 41929435 41929751 -101856704 - AluJb SINE Alu -8 304 5 305 293 31 31 chr12 41930204 41930395 -101856060 - MER117 DNA MER1_type -1 196 6 8553 240 27 29 chr12 41931010 41931282 -101855173 + L1ME1 LINE L1 2555 2826 -3340 2195 112 16 3 chr12 41931282 41931587 -101854868 + AluY SINE Alu 1 309 -2 8553 240 27 29 chr12 41931587 41934928 -101851527 + L1ME1 LINE L1 2826 6161 -5 566 239 67 21 chr12 41934934 41935173 -101851282 + L1ME4a LINE L1 5677 5926 -195 244 316 118 0 chr12 41936762 41936898 -101849557 - MIR SINE MIR 0 262 111 2175 82 31 7 chr12 41936902 41937194 -101849261 - AluSx SINE Alu -13 299 1 4433 165 18 49 chr12 41937765 41938135 -101848320 - L1MB8 LINE L1 -1 6177 5797 2158 132 0 0 chr12 41938135 41938423 -101848032 - AluSx SINE Alu -24 288 1 4433 165 18 49 chr12 41938423 41938952 -101847503 - L1MB8 LINE L1 -381 5797 5253 1837 123 56 7 chr12 41938952 41939247 -101847208 - AluSx SINE Alu 0 308 1 4433 165 18 49 chr12 41939247 41939397 -101847058 - L1MB8 LINE L1 -925 5253 5100 676 199 15 37 chr12 41939397 41939533 -101846922 - FLAM_C SINE Alu 0 133 1 4433 165 18 49 chr12 41939533 41939927 -101846528 - L1MB8 LINE L1 -1078 5100 4771 6487 50 1 3 chr12 41939964 41940826 -101845629 + L1PA5 LINE L1 4367 5226 -920 5959 36 0 0 chr12 41940926 41941628 -101844827 + L1PA5 LINE L1 5448 6149 -5 393 74 0 0 chr12 41941629 41941683 -101844772 + L1MB7 LINE L1 5820 5873 -311 473 214 0 0 chr12 41941683 41941772 -101844683 + AluJ/FLAM SINE Alu 1 89 -223 418 240 0 0 chr12 41941770 41941845 -101844610 - AluSc SINE Alu -106 203 129 * 713 182 7 7 chr12 41941851 41941994 -101844461 + L1MB8 LINE L1 6030 6172 -6 516 164 26 0 chr12 41941998 41942114 -101844341 - MER45B DNA AcHobo -85 955 837 295 268 0 14 chr12 41943243 41943314 -101843141 + GA-rich Low_complexity Low_complexity 2 71 0 1552 75 84 0 chr12 41944563 41944776 -101841679 + AluY SINE Alu 12 242 -69 1323 161 125 4 chr12 41944787 41945084 -101841371 + AluJb SINE Alu 5 331 0 333 241 18 36 chr12 41945125 41945237 -101841218 + MER34 LTR ERV1 433 542 0 538 188 0 0 chr12 41945699 41945784 -101840671 + AluJ/FLAM SINE Alu 1 85 -227 692 281 44 76 chr12 41946341 41946840 -101839615 + MER34 LTR ERV1 25 507 -35 765 276 84 4 chr12 41946882 41947121 -101839334 + MIR SINE MIR 5 262 0 379 154 90 0 chr12 41947126 41947204 -101839251 + Tigger4(Zombi) DNA MER2_type 2 86 -2645 * 2134 100 18 131 chr12 41947202 41947247 -101839208 + Tigger4(Zombi) DNA MER2_type 2295 2343 -388 2134 108 7 0 chr12 41947247 41947542 -101838913 + AluSx SINE Alu 1 297 -15 2134 100 18 131 chr12 41947542 41947605 -101838850 + Tigger4(Zombi) DNA MER2_type 2343 2411 -320 2233 99 3 0 chr12 41947605 41947908 -101838547 + AluY SINE Alu 1 304 -7 2361 72 3 16 chr12 41947917 41948221 -101838234 + AluY SINE Alu 2 301 -10 2134 100 18 131 chr12 41948221 41948544 -101837911 + Tigger4(Zombi) DNA MER2_type 2419 2679 -52 2214 121 3 3 chr12 41948544 41948857 -101837598 - AluSq SINE Alu 0 313 1 2134 100 18 131 chr12 41948857 41948903 -101837552 + Tigger4(Zombi) DNA MER2_type 2679 2729 -2 232 269 214 41 chr12 41949036 41949104 -101837351 - MIR SINE MIR -6 256 201 2385 81 0 10 chr12 41949104 41949401 -101837054 - AluSq SINE Alu -19 294 1 232 269 214 41 chr12 41949401 41949477 -101836978 - MIR SINE MIR -61 201 87 1933 144 26 7 chr12 41949661 41949967 -101836488 + AluSx SINE Alu 1 312 0 2099 126 3 0 chr12 41950123 41950417 -101836038 - AluSx SINE Alu -17 295 1 1831 130 13 32 chr12 41950516 41950831 -101835624 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr12 41951099 41951129 -101835326 + AT_rich Low_complexity Low_complexity 1 30 0 2128 96 0 17 chr12 41951311 41951603 -101834852 + AluSx SINE Alu 1 287 -25 2220 132 0 0 chr12 41952754 41953064 -101833391 + AluSx SINE Alu 1 310 -2 407 295 40 23 chr12 41953995 41954168 -101832287 + MIR SINE MIR 63 238 -24 250 335 126 50 chr12 41954333 41954895 -101831560 + L2 LINE L2 1576 2180 -1134 350 235 78 0 chr12 41954993 41955095 -101831360 - MER94 DNA DNA -3 131 22 267 192 64 77 chr12 41955124 41955155 -101831300 + L2 LINE L2 2213 2243 -1071 423 284 68 28 chr12 41955155 41955405 -101831050 + MIR SINE MIR 2 261 -1 267 192 64 77 chr12 41955405 41955451 -101831004 + L2 LINE L2 2243 2289 -1025 2577 56 0 7 chr12 41955541 41955846 -101830609 - AluSp SINE Alu -8 305 3 1873 164 3 19 chr12 41955849 41956166 -101830289 - AluJb SINE Alu 0 312 1 814 158 8 8 chr12 41956507 41956640 -101829815 + FLAM_C SINE Alu 1 133 0 313 314 54 94 chr12 41957057 41957388 -101829067 + L2 LINE L2 2930 3247 -25 * 614 178 178 72 chr12 41957370 41957514 -101828941 - MIR SINE MIR 0 262 94 2329 113 0 6 chr12 41957514 41957825 -101828630 + AluSx SINE Alu 1 309 -3 614 178 178 72 chr12 41957825 41957860 -101828595 - MIR SINE MIR -168 94 64 924 186 24 0 chr12 41957889 41958056 -101828399 - AluJb SINE Alu -2 310 140 2012 141 0 0 chr12 41958826 41959117 -101827338 - AluSx SINE Alu -11 301 11 1430 171 0 72 chr12 41959180 41959484 -101826971 + AluJo SINE Alu 1 282 -30 298 329 14 77 chr12 41960100 41960113 -101826342 - MIR SINE MIR -23 185 173 2209 114 0 0 chr12 41960113 41960410 -101826045 + AluSx SINE Alu 5 301 -11 298 329 14 77 chr12 41960410 41960426 -101826029 - MIR SINE MIR -35 173 158 900 83 41 12 chr12 41960426 41960595 -101825860 + CT-rich Low_complexity Low_complexity 3 176 0 1659 160 22 8 chr12 41960595 41960863 -101825592 - AluJb SINE Alu -38 274 3 298 329 14 77 chr12 41960863 41960974 -101825481 - MIR SINE MIR -48 160 51 2200 107 7 0 chr12 41961905 41962213 -101824242 - AluSq SINE Alu -3 310 1 2326 86 0 0 chr12 41962437 41962729 -101823726 + AluSq SINE Alu 6 297 -16 941 110 15 0 chr12 41962955 41963091 -101823364 + AluSg/x SINE Alu 155 292 -18 702 166 159 0 chr12 41963091 41963248 -101823207 + MER34C LTR ERV1 52 233 -352 867 126 0 22 chr12 41963325 41963460 -101822995 - FLAM_C SINE Alu -1 132 1 371 174 43 33 chr12 41963470 41963562 -101822893 + MER34 LTR ERV1 450 542 0 423 263 61 14 chr12 41965042 41965229 -101821226 + MIR SINE MIR 2 243 -19 265 333 56 0 chr12 41965431 41965521 -101820934 - MIR SINE MIR -81 127 33 1759 127 3 75 chr12 41965686 41965891 -101820564 - AluJb SINE Alu -11 301 126 2718 20 0 0 chr12 41965891 41966192 -101820263 - AluYa5 SINE Alu -10 301 1 1759 127 3 75 chr12 41966192 41966308 -101820147 - AluJb SINE Alu -186 126 3 2168 127 0 7 chr12 41966308 41966616 -101819839 - AluSx SINE Alu -6 306 1 307 390 45 7 chr12 41966688 41966842 -101819613 - L2 LINE L2 -5 3267 3108 24 0 0 0 chr12 41967190 41967214 -101819241 + AT_rich Low_complexity Low_complexity 1 24 0 2050 139 3 0 chr12 41967215 41967502 -101818953 - AluSx SINE Alu -24 288 1 242 391 167 3 chr12 41967878 41968177 -101818278 + L2 LINE L2 2384 2731 -583 1281 109 258 0 chr12 41968491 41968712 -101817743 - AluSx SINE Alu -21 291 14 814 181 0 0 chr12 41969028 41969155 -101817300 - FLAM_C SINE Alu -16 127 1 1637 148 39 18 chr12 41969195 41969314 -101817141 + AluJo SINE Alu 16 131 -181 1787 118 110 7 chr12 41969314 41969586 -101816869 + AluSx SINE Alu 3 302 -10 1637 148 39 18 chr12 41969586 41969749 -101816706 + AluJo SINE Alu 131 304 -8 569 157 0 0 chr12 41971242 41971325 -101815130 - FLAM_C SINE Alu -24 119 37 5457 93 10 6 chr12 41971504 41972192 -101814263 + LTR8 LTR ERV1 1 691 0 267 239 0 0 chr12 41972213 41972280 -101814175 + CT-rich Low_complexity Low_complexity 4 70 0 4136 140 14 65 chr12 41972308 41973036 -101813419 + LTR8 LTR ERV1 1 691 0 233 283 2 0 chr12 41973395 41973462 -101812993 - Charlie8 DNA MER1_type 0 2417 1350 1528 117 0 0 chr12 41973513 41973736 -101812719 + L1PA11 LINE L1 4434 4656 -1490 1554 137 4 18 chr12 41973737 41973963 -101812492 + AluSx SINE Alu 1 223 -89 5023 93 10 40 chr12 41973965 41974687 -101811768 + L1PA11 LINE L1 5474 6173 -1 2287 114 7 0 chr12 41974716 41975022 -101811433 + AluSx SINE Alu 1 308 -4 507 282 84 40 chr12 41975116 41975343 -101811112 - Charlie8 DNA MER1_type -2153 264 28 327 49 0 0 chr12 41975350 41975391 -101811064 + (T)n Simple_repeat Simple_repeat 1 41 0 1939 158 3 7 chr12 41976086 41976390 -101810065 + AluJb SINE Alu 1 303 -9 4809 41 2 7 chr12 41976437 41976998 -101809457 + LTR6B LTR ERV1 1 558 0 204 290 29 0 chr12 41977203 41977272 -101809183 + L3 LINE CR1 383 453 -1124 2708 144 16 39 chr12 41977282 41977775 -101808680 - L1MC/D LINE L1 -605 5739 5258 1184 161 24 28 chr12 41977778 41977989 -101808466 - AluJb SINE Alu -17 295 86 6869 231 34 41 chr12 41977989 41978990 -101807465 - L1MC/D LINE L1 -877 5269 4262 2317 113 0 3 chr12 41978990 41979300 -101807155 - AluSq SINE Alu -1 312 4 6869 231 34 41 chr12 41979300 41980335 -101806120 - L1MC/D LINE L1 -1884 4262 3248 2279 84 0 3 chr12 41980346 41980661 -101805794 - AluSq SINE Alu 0 314 1 1822 89 0 0 chr12 41980724 41980948 -101805507 - AluSg/x SINE Alu -7 305 82 2256 94 13 7 chr12 41981133 41981440 -101805015 - AluSq SINE Alu -4 309 1 931 251 61 4 chr12 41981506 41981753 -101804702 - MIR SINE MIR 0 262 2 250 293 108 40 chr12 41981997 41982219 -101804236 + HAL1 LINE L1 1978 2214 -293 2278 109 3 0 chr12 41982632 41982936 -101803519 - AluSg SINE Alu -5 305 1 2369 80 0 0 chr12 41983518 41983805 -101802650 + AluSg SINE Alu 6 292 -18 266 208 52 39 chr12 41984689 41984766 -101801689 + MIR SINE MIR 38 115 -147 668 261 115 14 chr12 41985045 41985263 -101801192 + MIR SINE MIR 23 262 0 202 222 44 0 chr12 41985326 41985371 -101801084 - MIR SINE MIR -114 94 48 192 40 0 0 chr12 41985799 41985824 -101800631 + (A)n Simple_repeat Simple_repeat 1 25 0 333 313 23 16 chr12 41986212 41986340 -101800115 - MER5B DNA MER1_type -49 129 1 619 286 8 0 chr12 41988616 41988749 -101797706 + MER91A DNA MER1_type 63 196 0 181 291 222 26 chr12 41989733 41989850 -101796605 - L2 LINE L2 0 3272 3133 22 0 0 0 chr12 41990384 41990406 -101796049 + AT_rich Low_complexity Low_complexity 1 22 0 499 288 160 14 chr12 41990906 41991125 -101795330 + MLT1L LTR MaLR 1 251 -364 801 220 28 16 chr12 41991156 41991338 -101795117 - MLT1C LTR MaLR 0 467 284 1661 196 52 70 chr12 41991367 41991745 -101794710 + MER34B LTR ERV1 10 378 -187 2289 104 0 0 chr12 41991745 41992043 -101794412 - AluSg SINE Alu -7 303 6 1661 196 52 70 chr12 41992043 41992165 -101794290 + MER34B LTR ERV1 378 501 -64 2027 130 0 10 chr12 41992180 41992479 -101793976 - AluSq SINE Alu -17 296 1 1074 148 59 110 chr12 41992562 41992852 -101793603 - MLT1C LTR MaLR -189 278 4 442 308 83 29 chr12 41992880 41993120 -101793335 + MLT1L LTR MaLR 355 607 -8 264 200 0 0 chr12 41993333 41993388 -101793067 + GA-rich Low_complexity Low_complexity 3 57 0 507 241 141 42 chr12 41993498 41993689 -101792766 - MER63A DNA MER1_type 0 210 1 788 116 91 8 chr12 41993819 41993940 -101792515 + FLAM_C SINE Alu 1 131 -2 343 319 11 0 chr12 41993993 41994084 -101792371 + L2 LINE L2 3136 3227 -45 389 216 23 0 chr12 41994402 41994490 -101791965 + MER103 DNA DNA 2 91 -75 624 267 76 33 chr12 41995157 41995367 -101791088 + MIR SINE MIR 2 220 -42 2192 110 7 0 chr12 41995371 41995671 -101790784 - AluSg SINE Alu -6 304 3 2046 116 24 10 chr12 41996525 41996817 -101789638 + AluSq SINE Alu 1 296 -17 1825 161 40 3 chr12 41996906 41997205 -101789250 + AluJb SINE Alu 1 310 -2 3185 128 66 8 chr12 41997350 41997880 -101788575 - L1P LINE L1 -755 5391 4831 3050 84 18 0 chr12 41997880 41998259 -101788196 + L1PA11 LINE L1 5784 6172 -2 429 294 8 8 chr12 41998354 41998473 -101787982 + L2 LINE L2 3191 3309 -4 2496 88 0 0 chr12 41999297 41999604 -101786851 - AluSg SINE Alu -3 307 1 2104 120 25 0 chr12 42000234 42000518 -101785937 - AluSx SINE Alu -21 291 1 1551 173 70 16 chr12 42002355 42002742 -101783713 + L1M4 LINE L1 1180 1587 -4955 2087 132 3 13 chr12 42002745 42003055 -101783400 + AluSg SINE Alu 1 307 -3 231 171 0 0 chr12 42003055 42003090 -101783365 - MIR SINE MIR -164 98 64 210 143 0 0 chr12 42003110 42003145 -101783310 + (T)n Simple_repeat Simple_repeat 1 35 0 45 0 0 0 chr12 42003401 42003446 -101783009 + AT_rich Low_complexity Low_complexity 1 45 0 270 259 54 102 chr12 42004184 42004331 -101782124 - L2 LINE L2 -1098 2216 2077 616 180 49 0 chr12 42004337 42004459 -101781996 + L1ME2 LINE L1 6036 6163 -1 189 0 0 0 chr12 42004477 42004498 -101781957 + (GA)n Simple_repeat Simple_repeat 2 22 0 505 198 75 9 chr12 42005882 42005988 -101780467 + FLAM_C SINE Alu 3 115 -28 207 0 0 0 chr12 42005988 42006011 -101780444 + (GA)n Simple_repeat Simple_repeat 2 24 0 755 230 17 6 chr12 42006013 42006187 -101780268 + L1MDa LINE L1 316 491 -6049 320 274 0 0 chr12 42007016 42007089 -101779366 - L1PA15-16 LINE L1 -5688 1161 1089 664 209 29 15 chr12 42007122 42007289 -101779166 + MSTB2 LTR MaLR 1 158 -268 752 95 0 0 chr12 42007502 42007597 -101778858 - AluS SINE Alu -217 96 2 35 0 0 0 chr12 42008115 42008150 -101778305 + AT_rich Low_complexity Low_complexity 1 35 0 550 173 0 0 chr12 42008150 42008231 -101778224 - FRAM SINE Alu -27 149 69 901 122 17 22 chr12 42008382 42008563 -101777892 + GA-rich Low_complexity Low_complexity 1 180 0 305 21 0 64 chr12 42008722 42008769 -101777686 + (TA)n Simple_repeat Simple_repeat 2 45 0 917 113 0 0 chr12 42008795 42008919 -101777536 - AluY SINE Alu -187 124 1 226 213 43 64 chr12 42008933 42009027 -101777428 - L1MB7 LINE L1 -54 6130 6039 320 131 0 33 chr12 42009032 42009093 -101777362 - Alu SINE Alu 0 301 243 4464 173 11 6 chr12 42009197 42009982 -101776473 + L1MA4A LINE L1 5291 6079 -224 1136 131 6 11 chr12 42010256 42010431 -101776024 + HERVK9 LTR ERVK 5461 5634 -282 670 251 9 23 chr12 42010574 42010793 -101775662 + L1M4 LINE L1 4170 4385 -1761 1909 158 3 0 chr12 42010793 42011078 -101775377 + AluSg SINE Alu 1 286 -24 2527 109 5 55 chr12 42011259 42011661 -101774794 + MLT2A1 LTR ERVL 28 409 -35 792 78 0 0 chr12 42011694 42011797 -101774658 - MLT2A2 LTR ERVL -346 107 5 1010 214 6 3 chr12 42012206 42012450 -101774005 + L1M4 LINE L1 2443 2685 -3461 600 188 0 0 chr12 42012451 42012552 -101773903 + AluS SINE Alu 2 102 -210 2134 117 3 0 chr12 42013877 42014167 -101772288 - AluSx SINE Alu -21 291 1 250 287 112 58 chr12 42014196 42014384 -101772071 - MIR SINE MIR -32 230 33 371 104 0 30 chr12 42015180 42015247 -101771208 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 881 197 13 13 chr12 42015264 42015567 -101770888 + MER93b LTR ERV1 1 402 0 1736 144 22 4 chr12 42015602 42015873 -101770582 + AluJo SINE Alu 7 282 -30 287 206 56 24 chr12 42016401 42016527 -101769928 + (TA)n Simple_repeat Simple_repeat 2 131 0 1543 190 21 14 chr12 42016697 42016986 -101769469 + AluJo SINE Alu 3 293 -19 2005 146 0 0 chr12 42016988 42017298 -101769157 + AluSx SINE Alu 1 310 0 25 0 0 0 chr12 42017302 42017327 -101769128 + AT_rich Low_complexity Low_complexity 1 25 0 2685 113 35 0 chr12 42018056 42018429 -101768026 - L1PA11 LINE L1 -1 6173 5788 927 172 0 0 chr12 42018499 42018644 -101767811 - AluJb SINE Alu -23 289 145 4552 174 16 6 chr12 42018655 42019539 -101766916 - L1MD1 LINE L1 -187 6055 5161 785 96 0 17 chr12 42019528 42019540 -101766915 - L1PB1 LINE L1 -238 5913 5902 * 2162 111 3 0 chr12 42019540 42019828 -101766627 - AluSg SINE Alu -21 289 1 785 96 0 17 chr12 42019828 42019930 -101766525 - L1PB1 LINE L1 -249 5902 5801 331 230 48 63 chr12 42019913 42020039 -101766416 + L1M4 LINE L1 3804 3927 -2219 * 566 320 7 19 chr12 42071545 42071764 -101714691 - MIR SINE MIR -4 258 43 261 271 186 8 chr12 42073297 42073415 -101713040 - MIR SINE MIR -88 174 36 330 213 67 0 chr12 42073416 42073491 -101712964 + MER116 DNA Mariner 1 80 0 2129 113 3 0 chr12 42074079 42074370 -101712085 - AluSp SINE Alu -19 294 3 227 246 154 46 chr12 42074629 42074759 -101711696 - MIR3 SINE MIR -64 144 1 2083 126 3 7 chr12 42074950 42075251 -101711204 - AluSx SINE Alu -12 300 1 25 23 0 23 chr12 42077238 42077255 -101709200 + AT_rich Low_complexity Low_complexity 1 17 -25 2330 67 20 0 chr12 42077255 42077553 -101708902 + AluY SINE Alu 1 304 -7 25 23 0 23 chr12 42077553 42077578 -101708877 + AT_rich Low_complexity Low_complexity 17 42 0 315 316 60 17 chr12 42078826 42078943 -101707512 + MIR3 SINE MIR 10 131 -77 226 275 83 64 chr12 42079398 42079507 -101706948 - L2 LINE L2 -4 3268 3158 25 51 0 0 chr12 42079593 42079632 -101706823 + AT_rich Low_complexity Low_complexity 1 39 0 534 276 127 37 chr12 42080162 42080881 -101705574 + L1ME3 LINE L1 1016 1993 -4728 1219 157 9 39 chr12 42080911 42081140 -101705315 + AluJo SINE Alu 86 307 -5 5585 251 71 55 chr12 42081541 42085503 -101700952 + L1ME3 LINE L1 2452 6475 -81 2206 96 4 0 chr12 42085972 42086252 -101700203 + AluSx SINE Alu 9 289 -23 345 47 0 0 chr12 42086536 42086579 -101699876 + (TA)n Simple_repeat Simple_repeat 1 43 0 2284 75 3 29 chr12 42086579 42086876 -101699579 - AluY SINE Alu -20 291 1 25 0 0 0 chr12 42087432 42087457 -101698998 + AT_rich Low_complexity Low_complexity 1 25 0 341 377 26 21 chr12 42087897 42088088 -101698367 - MIR SINE MIR -50 212 21 245 350 117 6 chr12 42088607 42088770 -101697685 + MIR SINE MIR 12 192 -70 207 0 0 0 chr12 42089653 42089676 -101696779 + (T)n Simple_repeat Simple_repeat 1 23 0 308 300 0 12 chr12 42089969 42090049 -101696406 + L2 LINE L2 3230 3308 -5 185 307 69 30 chr12 42090772 42090873 -101695582 - MIR3 SINE MIR -2 206 102 1998 136 0 26 chr12 42090875 42091183 -101695272 - AluSx SINE Alu -12 300 1 1698 115 16 47 chr12 42091423 42091620 -101694835 + L1MB7 LINE L1 5854 6039 -145 2078 138 33 25 chr12 42091620 42091983 -101694472 + MER47A DNA MER2_type 1 366 0 1698 115 16 47 chr12 42091983 42092106 -101694349 + L1MB7 LINE L1 6039 6164 -20 474 313 45 25 chr12 42093138 42093336 -101693119 - L3b LINE CR1 -101 1482 1281 453 237 0 0 chr12 42093358 42093455 -101693000 + MIR SINE MIR 164 260 -2 268 300 47 41 chr12 42093469 42093639 -101692816 - MLT1K LTR MaLR -7 581 411 504 252 73 8 chr12 42093752 42093875 -101692580 - L2 LINE L2 -5 3308 3178 329 154 44 0 chr12 42095175 42095266 -101691189 + GA-rich Low_complexity Low_complexity 2 96 0 34 84 0 0 chr12 42096199 42096282 -101690173 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr12 42096671 42096695 -101689760 + (CAA)n Simple_repeat Simple_repeat 2 25 0 357 267 11 11 chr12 42099772 42099862 -101686593 + MIR3 SINE MIR 90 179 -29 281 243 59 59 chr12 42099975 42100111 -101686344 - MIR3 SINE MIR -12 196 61 265 252 92 17 chr12 42100201 42100320 -101686135 - L2 LINE L2 -1265 2049 1922 274 247 165 24 chr12 42100675 42100760 -101685695 - MIR3 SINE MIR -35 173 77 264 339 57 0 chr12 42100814 42100938 -101685517 + L3 LINE CR1 1446 1576 -1 21 0 0 0 chr12 42101671 42101692 -101684763 + AT_rich Low_complexity Low_complexity 1 21 0 184 237 0 0 chr12 42102026 42102064 -101684391 - MER5B DNA MER1_type -76 102 65 21 0 0 0 chr12 42102070 42102091 -101684364 + AT_rich Low_complexity Low_complexity 1 21 0 304 333 58 23 chr12 42102923 42103094 -101683361 - MIR SINE MIR -13 249 73 21 0 0 0 chr12 42103515 42103536 -101682919 + AT_rich Low_complexity Low_complexity 1 21 0 493 274 183 5 chr12 42104318 42104526 -101681929 - MIR SINE MIR 0 262 18 198 71 0 0 chr12 42104875 42104903 -101681552 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 248 327 262 10 chr12 42104912 42105114 -101681341 - L2 LINE L2 -22 3250 2998 1143 234 63 9 chr12 42106866 42107199 -101679256 + L2 LINE L2 2382 2732 -582 385 237 214 15 chr12 42107194 42107325 -101679130 - MER5B DNA MER1_type -13 165 9 * 498 285 298 5 chr12 42107352 42107575 -101678880 + L2 LINE L2 2818 2975 -338 354 45 0 0 chr12 42107575 42107619 -101678836 + (CACCC)n Simple_repeat Simple_repeat 4 47 0 498 285 298 5 chr12 42107619 42107778 -101678677 + L2 LINE L2 2975 3312 -1 812 256 10 0 chr12 42108972 42109171 -101677284 - MIR SINE MIR -10 252 52 477 306 88 0 chr12 42109179 42109326 -101677129 - MIR SINE MIR -71 191 32 271 291 206 14 chr12 42109619 42109758 -101676697 - MIR SINE MIR -63 145 9 341 219 8 31 chr12 42110458 42110586 -101675869 + CT-rich Low_complexity Low_complexity 2 126 0 2111 137 0 0 chr12 42111200 42111493 -101674962 + AluSq SINE Alu 1 293 -20 1119 238 46 32 chr12 42111957 42112035 -101674420 + MER39 LTR ERV1 179 254 -453 2103 53 0 26 chr12 42112035 42112300 -101674155 - AluY SINE Alu -5 306 49 1119 238 46 32 chr12 42112300 42112610 -101673845 + MER39 LTR ERV1 254 707 0 1333 181 90 12 chr12 42112613 42113029 -101673426 + LTR54 LTR ERV1 1 395 -8 42176 39 3 1 chr12 42113176 42119318 -101667137 - L1PA4 LINE L1 -3 6152 1 3109 98 8 38 chr12 42119711 42120212 -101666243 - LTR15 LTR ERV1 -7 486 1 279 273 82 27 chr12 42120392 42120502 -101665953 - L2 LINE L2 -574 2740 2625 793 355 116 24 chr12 42120649 42120975 -101665480 - L2 LINE L2 -214 3058 2763 2020 184 41 0 chr12 42120975 42121362 -101665093 + MER57A LTR ERV1 1 403 0 793 355 116 24 chr12 42121362 42122589 -101663866 - L2 LINE L2 -509 2763 1352 267 284 128 14 chr12 42122729 42122870 -101663585 - L2 LINE L2 -2493 821 665 455 254 54 54 chr12 42122888 42123073 -101663382 - MLT1J2 LTR MaLR -2 448 264 2038 124 97 58 chr12 42123627 42124039 -101662416 + MSTA LTR MaLR 1 428 0 7625 138 35 81 chr12 42124039 42124401 -101662054 + MSTA-int LTR MaLR 1 378 -1273 637 74 0 0 chr12 42124401 42124482 -101661973 - AluSp/q SINE Alu -16 297 217 7625 138 35 81 chr12 42124482 42125727 -101660728 + MSTA-int LTR MaLR 378 1651 0 1991 152 101 24 chr12 42125727 42126102 -101660353 + MSTA LTR MaLR 1 404 -24 350 115 49 0 chr12 42126092 42126153 -101660302 + THE1B LTR MaLR 301 364 0 * 321 306 56 0 chr12 42126232 42126340 -101660115 + MLT1J2 LTR MaLR 101 214 -236 220 231 58 0 chr12 42126353 42126405 -101660050 - L2 LINE L2 0 3313 3259 2258 130 25 3 chr12 42127374 42127729 -101658726 + THE1B LTR MaLR 1 363 -1 1917 204 83 34 chr12 42127756 42128251 -101658204 - LTR40a LTR ERVL 0 519 1 1767 180 17 0 chr12 42128521 42128832 -101657623 + AluJb SINE Alu 1 312 0 28 29 0 0 chr12 42129741 42129776 -101656679 + AT_rich Low_complexity Low_complexity 1 35 0 1048 211 84 92 chr12 42129954 42130347 -101656108 + MSTD LTR MaLR 6 395 -1 1434 229 32 42 chr12 42130731 42131137 -101655318 + MLT1C LTR MaLR 53 454 -13 27 81 0 0 chr12 42131179 42131241 -101655214 + AT_rich Low_complexity Low_complexity 1 62 0 22 56 0 0 chr12 42131269 42131305 -101655150 + AT_rich Low_complexity Low_complexity 1 36 0 231 268 62 0 chr12 42131347 42131459 -101654996 + L1M4 LINE L1 3826 3944 -2202 981 276 6 3 chr12 42131529 42131840 -101654615 + L1M4 LINE L1 3551 3862 -2284 1505 254 45 71 chr12 42131867 42132429 -101654026 + MER77 LTR ERV1 53 599 -6 238 206 14 82 chr12 42132420 42132493 -101653962 + MER21A LTR ERV1 677 744 -187 * 2202 122 0 0 chr12 42132527 42132830 -101653625 - AluSg SINE Alu -7 303 1 774 263 80 98 chr12 42132831 42133836 -101652619 + L1M4 LINE L1 3859 4845 -1301 997 57 14 7 chr12 42134038 42134179 -101652276 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2034 143 0 0 chr12 42134179 42134459 -101651996 - AluSx SINE Alu -32 280 1 23 92 0 0 chr12 42134962 42135027 -101651428 + AT_rich Low_complexity Low_complexity 1 65 0 1412 281 90 32 chr12 42136163 42137236 -101649219 - L1M4 LINE L1 -768 5378 4243 1340 213 61 78 chr12 42137239 42137833 -101648622 - LTR24B LTR ERV1 0 635 1 902 262 61 71 chr12 42137836 42138329 -101648126 - L1M4 LINE L1 -1908 4238 3751 261 167 0 21 chr12 42138331 42138379 -101648076 + L2 LINE L2 3189 3235 -78 425 310 67 32 chr12 42139437 42139473 -101646982 + L2 LINE L2 3020 3053 -260 2312 117 0 0 chr12 42139473 42139780 -101646675 + AluSx SINE Alu 1 307 -5 425 310 67 32 chr12 42139780 42140027 -101646428 + L2 LINE L2 3053 3313 0 687 264 112 15 chr12 42140211 42140408 -101646047 + MIR SINE MIR 35 250 -12 650 258 57 90 chr12 42140967 42141355 -101645100 + MLT1L LTR MaLR 207 581 -34 2252 118 28 12 chr12 42143699 42144224 -101642231 + MER4A LTR ERV1 1 664 0 1151 246 164 0 chr12 42144332 42144734 -101641721 - MER110A LTR ERV1 0 468 1 2575 103 76 8 chr12 42145177 42145574 -101640881 - MSTA LTR MaLR 0 428 5 1919 163 6 10 chr12 42145716 42146029 -101640426 - AluJb SINE Alu 0 312 1 539 279 51 6 chr12 42146143 42146301 -101640154 - L2 LINE L2 -1082 2232 2068 1050 208 78 42 chr12 42146960 42147292 -101639163 + MER2 DNA MER2_type 1 344 0 945 113 0 0 chr12 42147544 42147677 -101638778 - AluSg/x SINE Alu -4 308 176 926 180 11 14 chr12 42148482 42148746 -101637709 - MER41B-int LTR ERV1 -5588 358 1 1039 110 7 0 chr12 42148746 42148900 -101637555 - MER41B LTR ERV1 0 635 481 1952 129 0 21 chr12 42148934 42149220 -101637235 - AluSx SINE Alu -32 280 1 180 300 100 0 chr12 42149371 42149421 -101637034 + L2 LINE L2 3121 3175 -97 369 385 16 11 chr12 42149745 42149932 -101636523 - L2 LINE L2 -584 2730 2543 706 317 53 12 chr12 42149975 42150221 -101636234 + MIR SINE MIR 7 262 0 25 31 0 0 chr12 42150916 42150948 -101635507 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr12 42151125 42151166 -101635289 + AT_rich Low_complexity Low_complexity 1 41 0 702 228 122 11 chr12 42151338 42151527 -101634928 - MER63A DNA MER1_type 0 210 1 284 116 130 14 chr12 42151659 42151728 -101634727 + MER116 DNA Mariner 4 80 0 604 266 75 117 chr12 42151735 42151908 -101634547 - MLT1L LTR MaLR -21 594 415 1949 142 10 0 chr12 42151908 42152196 -101634259 + AluSx SINE Alu 3 293 -19 604 266 75 117 chr12 42152196 42152518 -101633937 - MLT1L LTR MaLR -200 415 120 333 0 0 0 chr12 42152746 42152783 -101633672 + (TG)n Simple_repeat Simple_repeat 2 38 0 473 308 116 22 chr12 42153408 42153632 -101632823 + MIR SINE MIR 18 262 0 26 50 0 0 chr12 42153698 42153738 -101632717 + AT_rich Low_complexity Low_complexity 1 40 0 677 254 54 111 chr12 42155736 42156075 -101630380 + MLT1J1 LTR MaLR 69 389 -57 270 0 0 0 chr12 42156075 42156105 -101630350 + (TTA)n Simple_repeat Simple_repeat 2 31 0 677 254 54 111 chr12 42156105 42156116 -101630339 + MLT1J1 LTR MaLR 389 399 -47 205 273 0 0 chr12 42156634 42156678 -101629777 + (TG)n Simple_repeat Simple_repeat 1 44 0 320 106 0 0 chr12 42156796 42156843 -101629612 - MADE1 DNA Mariner 0 80 34 793 230 6 29 chr12 42156864 42157038 -101629417 - MER20 DNA MER1_type -49 170 1 366 368 26 0 chr12 42157225 42157342 -101629113 + MER115 DNA AcHobo 93 212 -481 315 196 18 0 chr12 42157494 42157550 -101628905 + MER115 DNA AcHobo 478 534 -159 4756 117 14 24 chr12 42158897 42159678 -101626777 - L1MA2 LINE L1 0 6304 5532 25 75 0 0 chr12 42160593 42160646 -101625809 + AT_rich Low_complexity Low_complexity 1 53 0 289 258 72 10 chr12 42160688 42160785 -101625670 - MIR SINE MIR -8 254 152 671 184 24 8 chr12 42160787 42160912 -101625543 - FLAM_C SINE Alu -2 131 5 735 193 146 42 chr12 42161974 42162255 -101624200 - MLT1B LTR MaLR 0 390 4 449 257 158 7 chr12 42162552 42162704 -101623751 - MIR SINE MIR 0 262 88 288 375 0 0 chr12 42162949 42163045 -101623410 + MER5A DNA MER1_type 87 182 -7 733 233 149 43 chr12 42163046 42163330 -101623125 + MLT1D LTR MaLR 1 314 -153 1214 276 104 43 chr12 42164021 42164550 -101621905 + L2 LINE L2 2211 2771 -543 210 174 0 0 chr12 42164647 42164693 -101621762 + T-rich Low_complexity Low_complexity 1 46 0 7020 66 0 2 chr12 42164704 42165875 -101620580 - L1PA5 LINE L1 -8 6146 4977 895 295 93 12 chr12 42165920 42166252 -101620203 - MLT1J LTR MaLR -131 380 22 * 936 272 53 36 chr12 42166251 42166667 -101619788 - MLT1J1 LTR MaLR -6 440 18 791 292 142 46 chr12 42166719 42167198 -101619257 + L2 LINE L2 2773 3305 -8 26 64 0 0 chr12 42167543 42167590 -101618865 + AT_rich Low_complexity Low_complexity 1 47 0 400 246 68 0 chr12 42169165 42169283 -101617172 - MIR3 SINE MIR -17 191 66 215 350 33 17 chr12 42169377 42169497 -101616958 - MIR SINE MIR -15 247 126 225 0 0 0 chr12 42169519 42169544 -101616911 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1254 244 0 11 chr12 42169554 42169816 -101616639 - AluJo SINE Alu -38 274 16 29 0 0 0 chr12 42171519 42171548 -101614907 + AT_rich Low_complexity Low_complexity 1 29 0 343 285 36 0 chr12 42171746 42171883 -101614572 - L1ME4a LINE L1 -19 6102 5961 2420 65 0 7 chr12 42172070 42172378 -101614077 + AluY SINE Alu 1 306 -5 944 269 36 17 chr12 42172382 42172683 -101613772 + L2 LINE L2 2395 2701 -613 2849 7 0 0 chr12 42172690 42173000 -101613455 - AluYa5 SINE Alu -1 310 1 808 162 9 52 chr12 42173101 42173311 -101613144 - Charlie1 DNA MER1_type -4 2757 2557 229 103 0 0 chr12 42173318 42173347 -101613108 + Alu SINE Alu 257 285 -17 1555 165 19 23 chr12 42173383 42173649 -101612806 - AluJb SINE Alu -46 266 2 1196 148 9 5 chr12 42173653 42173863 -101612592 - Charlie1 DNA MER1_type -208 2553 2343 251 254 45 0 chr12 42173861 42173928 -101612527 - Charlie1 DNA MER1_type -2690 71 2 * 787 309 127 30 chr12 42173943 42174406 -101612049 + L2 LINE L2 2806 3313 0 3015 225 35 19 chr12 42175825 42176690 -101609765 - L1M4 LINE L1 -1003 5537 4659 1328 209 77 14 chr12 42176692 42176989 -101609466 + Tigger7 DNA MER2_type 3 318 -2169 832 121 29 58 chr12 42176985 42177159 -101609296 + Tigger7 DNA MER2_type 2302 2470 -21 * 201 74 0 0 chr12 42177168 42177195 -101609260 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr12 42177254 42177275 -101609180 + AT_rich Low_complexity Low_complexity 1 21 0 1684 184 47 25 chr12 42177315 42178048 -101608407 - L1MEc LINE L1 -3150 3390 2566 41959 42 3 3 chr12 42178055 42184203 -101602252 - L1PA4 LINE L1 -8 6147 2 7324 194 23 26 chr12 42184220 42186992 -101599463 - L1PA16 LINE L1 -2 6867 4099 395 81 0 0 chr12 42187215 42187277 -101599178 - L1MA4A LINE L1 -2 6301 6240 6950 68 10 0 chr12 42187335 42188705 -101597750 - L1PA8 LINE L1 0 6172 4799 1947 86 14 0 chr12 42188705 42188996 -101597459 - L1PA8 LINE L1 -1735 4411 4117 15838 184 28 38 chr12 42189026 42190508 -101595947 - L1PA16 LINE L1 -2777 4072 2576 2390 34 54 3 chr12 42190508 42190804 -101595651 - AluY SINE Alu 0 311 1 15838 184 28 38 chr12 42190804 42193427 -101593028 - L1PA16 LINE L1 -4273 2576 5 2372 255 55 35 chr12 42193429 42194507 -101591948 - L1MEc LINE L1 -4099 2622 1524 22 0 10 0 chr12 42195185 42195249 -101591206 + AT_rich Low_complexity Low_complexity 1 22 0 1871 164 13 19 chr12 42195358 42195668 -101590787 + AluJo SINE Alu 1 308 -4 887 128 17 17 chr12 42196163 42196342 -101590113 + CT-rich Low_complexity Low_complexity 1 179 0 692 99 12 56 chr12 42196308 42196469 -101589986 + (TTCCC)n Simple_repeat Simple_repeat 4 157 0 * 1375 206 89 0 chr12 42196473 42196721 -101589734 - AluJb SINE Alu -33 279 10 2599 32 0 19 chr12 42197022 42197333 -101589122 - AluY SINE Alu -5 306 2 368 284 169 14 chr12 42197852 42198000 -101588455 - MER91A DNA MER1_type -25 171 1 267 54 0 0 chr12 42198503 42198540 -101587915 + (T)n Simple_repeat Simple_repeat 1 37 0 19645 104 2 13 chr12 42198553 42202374 -101584081 + L1PA8 LINE L1 2391 6166 -6 270 0 0 0 chr12 42203099 42203129 -101583326 + (TG)n Simple_repeat Simple_repeat 1 30 0 2349 223 91 12 chr12 42203862 42204079 -101582376 - MLT1E1 LTR MaLR 0 654 456 3656 114 99 5 chr12 42204079 42204676 -101581779 - MER39B LTR ERV1 0 653 1 2349 223 91 12 chr12 42204676 42205064 -101581391 - MLT1E1 LTR MaLR -198 456 1 41 58 0 0 chr12 42206043 42206112 -101580343 + AT_rich Low_complexity Low_complexity 1 69 0 844 278 77 46 chr12 42206117 42206272 -101580183 - L1ME4a LINE L1 -202 5919 5770 1777 166 10 24 chr12 42206272 42206567 -101579888 + AluJo SINE Alu 1 291 -21 844 278 77 46 chr12 42206567 42206770 -101579685 - L1ME4a LINE L1 -351 5770 5575 2107 152 157 16 chr12 42206770 42207211 -101579244 + MLT1D LTR MaLR 3 505 0 844 278 77 46 chr12 42207211 42207483 -101578972 - L1ME4a LINE L1 -546 5575 5269 3335 161 54 2 chr12 42207681 42208297 -101578158 + L1PB4 LINE L1 5502 6149 -7 633 192 104 6 chr12 42208332 42208514 -101577941 + Charlie1 DNA MER1_type 2174 2373 -388 244 196 0 0 chr12 42208596 42208647 -101577808 - Alu SINE Alu -5 297 247 685 200 0 0 chr12 42208694 42208809 -101577646 - FLAM_A SINE Alu -18 115 1 25 0 0 0 chr12 42209286 42209311 -101577144 + AT_rich Low_complexity Low_complexity 1 25 0 1147 80 0 0 chr12 42209313 42209463 -101576992 - L1PA5 LINE L1 -8 6146 5997 402 278 15 30 chr12 42209526 42209659 -101576796 - MIR3 SINE MIR -65 143 13 779 264 107 84 chr12 42310758 42311684 -101474771 + HAL1 LINE L1 818 1764 -743 304 236 39 39 chr12 42311917 42312044 -101474411 + HAL1b LINE L1 754 880 -468 429 262 79 118 chr12 42312356 42313105 -101473350 - L1MEd LINE L1 -4866 1253 534 395 302 26 17 chr12 42313271 42313387 -101473068 - MIR3 SINE MIR -50 158 42 508 310 94 79 chr12 42314540 42315325 -101471130 + L2 LINE L2 2091 2887 -427 250 319 0 0 chr12 42315514 42315583 -101470872 + L2 LINE L2 3241 3309 -4 2240 92 0 3 chr12 42317148 42317431 -101469024 - AluSq SINE Alu -31 282 1 200 143 238 0 chr12 42318177 42318219 -101468236 + L2 LINE L2 3261 3312 -1 519 319 126 63 chr12 42319645 42320059 -101466396 + L2 LINE L2 2827 3266 -6 216 0 0 0 chr12 42321463 42321487 -101464968 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr12 42323266 42323288 -101463167 + AT_rich Low_complexity Low_complexity 1 22 0 468 345 81 53 chr12 42323462 42323929 -101462526 + L2 LINE L2 2372 2851 -463 555 35 23 23 chr12 42323936 42324023 -101462432 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 21 0 0 0 chr12 42324079 42324100 -101462355 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 42324166 42324205 -101462250 + (CA)n Simple_repeat Simple_repeat 2 40 0 286 291 177 25 chr12 42324338 42324496 -101461959 + MIR SINE MIR 21 202 -60 431 272 63 7 chr12 42324782 42324975 -101461480 - L1MC4a LINE L1 -322 5799 5678 391 297 0 43 chr12 42325993 42326131 -101460324 + MIR SINE MIR 66 197 -65 193 307 93 0 chr12 42329398 42329473 -101456982 + MIR3 SINE MIR 119 200 -8 204 261 0 72 chr12 42336725 42336794 -101449661 - L2 LINE L2 -4 3268 3205 26 64 0 0 chr12 42336900 42336947 -101449508 + AT_rich Low_complexity Low_complexity 1 47 0 1718 167 42 0 chr12 42337261 42337573 -101448882 - MER7A DNA MER2_type 0 346 24 528 125 0 0 chr12 42337573 42337661 -101448794 + L1MB4 LINE L1 6093 6180 0 311 298 159 0 chr12 42338120 42338246 -101448209 - MIR3 SINE MIR -28 180 34 266 197 40 72 chr12 42339711 42339813 -101446642 + MIR SINE MIR 74 181 -27 228 236 0 18 chr12 42339914 42339969 -101446486 + (TATG)n Simple_repeat Simple_repeat 1 54 0 180 111 0 0 chr12 42339969 42339996 -101446459 + (CA)n Simple_repeat Simple_repeat 1 27 0 1463 211 41 6 chr12 42342877 42343311 -101443144 - L1MC4a LINE L1 -528 5636 5177 2741 113 39 7 chr12 42343630 42344045 -101442410 + MSTA LTR MaLR 1 428 0 618 222 28 6 chr12 42344079 42344259 -101442196 + L1MDa LINE L1 1960 2143 -4397 2429 222 47 29 chr12 42344301 42345477 -101440978 + L1MDa LINE L1 2234 3428 -3112 2333 96 0 0 chr12 42345477 42345778 -101440677 + AluY SINE Alu 5 305 -6 2429 222 47 29 chr12 42345778 42345827 -101440628 + L1MDa LINE L1 3428 3475 -3065 2129 111 44 0 chr12 42346121 42346419 -101440036 + AluY SINE Alu 1 311 0 236 319 118 21 chr12 42346434 42346578 -101439877 + MIR3 SINE MIR 19 176 -32 1972 133 11 0 chr12 42346687 42346972 -101439483 + AluSx SINE Alu 14 301 -11 1483 220 24 34 chr12 42347105 42347171 -101439284 + MLT1A2 LTR MaLR 1 66 -308 2036 144 39 30 chr12 42347171 42347532 -101438923 - THE1B LTR MaLR 0 364 1 11570 93 15 0 chr12 42347532 42349087 -101437368 - THE1B-int LTR MaLR 0 1580 2 1998 162 30 30 chr12 42349088 42349452 -101437003 - THE1B LTR MaLR 0 364 1 1483 220 24 34 chr12 42349452 42349760 -101436695 + MLT1A2 LTR MaLR 64 374 0 371 258 20 33 chr12 42349764 42349915 -101436540 + (CA)n Simple_repeat Simple_repeat 1 149 0 459 311 26 44 chr12 42349919 42350147 -101436308 + L2 LINE L2 2836 3059 -213 1642 173 52 6 chr12 42350201 42350525 -101435930 + MER44D DNA MER2_type 1 609 0 515 157 83 9 chr12 42350527 42350635 -101435820 - MER63 DNA MER1_type -277 785 44 372 313 55 16 chr12 42350778 42350906 -101435549 + L2 LINE L2 3136 3268 -4 5376 21 0 0 chr12 42351464 42352082 -101434373 - L1PA3 LINE L1 0 6155 5538 402 205 161 0 chr12 42352142 42352254 -101434201 + MLT1H LTR MaLR 79 208 -341 1816 158 45 0 chr12 42352382 42352712 -101433743 - L1PB4 LINE L1 -1 6155 5811 339 297 117 28 chr12 42352827 42353298 -101433157 - L1ME LINE L1 -304 5817 5296 22 0 0 0 chr12 42353848 42353870 -101432585 + AT_rich Low_complexity Low_complexity 1 22 0 1854 147 3 23 chr12 42353879 42354179 -101432276 + AluJo SINE Alu 1 294 -18 3322 127 16 87 chr12 42354535 42355213 -101431242 - L1MB2 LINE L1 -5 6166 5537 382 255 54 27 chr12 42355239 42355388 -101431067 - L1ME LINE L1 -872 5274 5122 839 82 0 8 chr12 42355925 42356047 -101430408 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 282 56 0 0 chr12 42356065 42356101 -101430354 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 519 182 28 6 chr12 42356190 42356366 -101430089 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr12 42356370 42356402 -101430053 + AT_rich Low_complexity Low_complexity 1 32 0 2235 158 13 3 chr12 42356787 42357172 -101429283 - L1PA16 LINE L1 -5 6864 6476 8193 174 42 2 chr12 42357375 42359792 -101426663 - L1PA14 LINE L1 -1 6160 3663 1237 13 0 0 chr12 42359792 42359941 -101426514 - L1PA4 LINE L1 -5 6150 6002 1550 170 0 10 chr12 42359943 42360249 -101426206 - L1PA14 LINE L1 -2481 3665 3363 11200 206 21 20 chr12 42360250 42360635 -101425820 - L1PA16 LINE L1 -386 6483 6100 2001 119 7 3 chr12 42360635 42360928 -101425527 - AluSq SINE Alu -19 294 1 11200 206 21 20 chr12 42360928 42364081 -101422374 - L1PA16 LINE L1 -769 6100 2938 36391 83 6 7 chr12 42364082 42370231 -101416224 - L1PA6 LINE L1 -1 6153 11 1278 133 27 0 chr12 42370240 42370465 -101415990 - L1PA16 LINE L1 -3898 2951 2721 1446 108 5 0 chr12 42370477 42370671 -101415784 + AluSg/x SINE Alu 107 301 -11 9489 159 29 8 chr12 42370671 42372357 -101414098 - L1PA16 LINE L1 -4171 2678 958 1172 183 5 10 chr12 42372349 42372557 -101413898 - L1PA16 LINE L1 -6640 209 3 * 592 295 84 35 chr12 42372731 42372958 -101413497 + MIR SINE MIR 1 238 -24 3203 95 20 18 chr12 42372978 42373430 -101413025 + MLT2A2 LTR ERVL 1 453 0 12066 78 2 10 chr12 42373430 42375093 -101411362 + HERVL-A2 LTR ERVL 1 1649 -4005 1700 154 3 64 chr12 42375093 42375269 -101411186 - AluSx SINE Alu -20 292 142 1780 54 0 0 chr12 42375269 42375492 -101410963 - L1PA4 LINE L1 0 6155 5933 1700 154 3 64 chr12 42375492 42375626 -101410829 - AluSx SINE Alu -170 142 1 28539 81 16 6 chr12 42375626 42379595 -101406860 + HERVL-A2 LTR ERVL 1645 5654 0 3055 127 11 4 chr12 42379595 42380045 -101406410 + MLT2A2 LTR ERVL 1 453 0 1763 171 9 40 chr12 42380096 42380594 -101405861 - L1MA7 LINE L1 -743 5403 4953 4340 170 31 4 chr12 42380594 42381424 -101405031 + L1MA7 LINE L1 5430 6291 0 233 143 0 0 chr12 42381449 42381498 -101404957 + L1MA7 LINE L1 6243 6291 0 22 70 0 0 chr12 42381498 42381541 -101404914 + AT_rich Low_complexity Low_complexity 1 43 0 241 267 17 0 chr12 42381583 42381643 -101404812 - L2 LINE L2 -48 3224 3164 226 328 218 11 chr12 42381656 42381830 -101404625 - MIR SINE MIR -6 256 47 1284 135 0 0 chr12 42382276 42382461 -101403994 - AluSc SINE Alu -1 308 124 414 278 141 49 chr12 42383059 42383627 -101402828 + HAL1 LINE L1 1151 1770 -737 24 32 0 0 chr12 42383714 42383745 -101402710 + AT_rich Low_complexity Low_complexity 1 31 0 364 227 38 30 chr12 42384100 42384232 -101402223 + MER94 DNA DNA 1 133 -1 280 211 40 40 chr12 42385484 42385560 -101400895 - MIR SINE MIR 0 262 187 2048 119 7 0 chr12 42385612 42385922 -101400533 - AluSx SINE Alu 0 314 3 208 307 67 60 chr12 42386310 42386460 -101399995 - MIR SINE MIR 0 262 112 229 268 71 24 chr12 42386838 42386965 -101399490 + LTR67 LTR ERVL 374 506 -51 2423 133 35 18 chr12 42387395 42387830 -101398625 + L1PA16 LINE L1 5724 6165 -1 23 0 0 0 chr12 42388217 42388240 -101398215 + AT_rich Low_complexity Low_complexity 1 23 0 444 221 21 43 chr12 42388246 42388386 -101398069 - MLT1H LTR MaLR -8 541 405 591 295 48 2 chr12 42388460 42388698 -101397757 - MLT1H LTR MaLR -260 289 1 282 277 50 0 chr12 42388779 42388880 -101397575 + ERVL LTR ERVL 1066 1171 -4593 584 248 0 0 chr12 42389465 42389582 -101396873 - FLAM_A SINE Alu -19 123 7 26 74 0 0 chr12 42389662 42389716 -101396739 + AT_rich Low_complexity Low_complexity 1 54 0 3199 131 25 8 chr12 42390006 42390561 -101395894 - L1P4 LINE L1 -491 5675 5099 2218 113 72 20 chr12 42390561 42390907 -101395548 + THE1B LTR MaLR 1 364 0 3199 131 25 8 chr12 42390907 42391316 -101395139 - L1P4 LINE L1 -1067 5099 4698 361 296 100 15 chr12 42391364 42391624 -101394831 - L1MEc LINE L1 -4821 1575 1294 2490 145 39 7 chr12 42391626 42392039 -101394416 + MSTB LTR MaLR 1 426 0 4239 194 38 1 chr12 42392039 42392873 -101393582 + MSTB-int LTR MaLR 1 865 -786 2783 121 7 2 chr12 42392870 42393309 -101393146 + L1PA15 LINE L1 5672 6112 -53 * 296 64 21 0 chr12 42393320 42393367 -101393088 + (GA)n Simple_repeat Simple_repeat 2 49 0 315 83 0 0 chr12 42393401 42393449 -101393006 + L1PA15 LINE L1 6112 6159 -6 302 239 33 0 chr12 42393456 42393548 -101392907 + L1MC4a LINE L1 6520 6614 -1194 3872 159 12 1 chr12 42393559 42394226 -101392229 + L1PA16 LINE L1 5477 6150 -16 2427 83 0 10 chr12 42394238 42394520 -101391935 + AluY SINE Alu 1 281 -30 219 36 0 0 chr12 42394520 42394548 -101391907 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2427 83 0 10 chr12 42394548 42394579 -101391876 + AluY SINE Alu 281 311 0 645 177 9 0 chr12 42394617 42394730 -101391725 - AluJb SINE Alu -196 116 3 431 249 43 109 chr12 42394732 42394945 -101391510 + L1MEc LINE L1 1729 1923 -4503 3351 166 21 13 chr12 42395039 42396130 -101390325 - L1PB4 LINE L1 -447 5709 4614 1114 144 12 37 chr12 42396127 42396372 -101390083 + L1PB4 LINE L1 5718 5928 -228 * 2088 118 0 3 chr12 42396663 42396987 -101389468 - AluSx SINE Alu 0 323 1 300 154 0 0 chr12 42398776 42398828 -101387627 + (CA)n Simple_repeat Simple_repeat 2 53 0 672 217 72 14 chr12 42398828 42399049 -101387406 + L1M4 LINE L1 3516 3749 -2397 446 254 87 89 chr12 42399876 42400139 -101386316 - MIR SINE MIR 0 262 3 5795 25 0 0 chr12 42400157 42400868 -101385587 - L1PA2 LINE L1 -1560 4586 3876 7760 18 0 0 chr12 42400870 42402429 -101384026 + L1PA2 LINE L1 4592 6150 -5 207 0 0 0 chr12 42402480 42402503 -101383952 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 225 331 77 24 chr12 42402941 42403110 -101383345 + L2 LINE L2 1274 1451 -1863 303 316 160 5 chr12 42404428 42404640 -101381815 + MIR SINE MIR 12 256 -6 851 270 18 9 chr12 42404884 42405106 -101381349 + MIR SINE MIR 23 246 -16 637 286 193 22 chr12 42406735 42407057 -101379398 + L3 LINE CR1 1138 1514 -63 222 333 65 24 chr12 42407214 42407337 -101379118 - MIR3 SINE MIR -31 177 50 298 346 47 0 chr12 42407340 42407467 -101378988 + L2 LINE L2 2606 2738 -576 201 39 0 0 chr12 42407732 42407758 -101378697 + (T)n Simple_repeat Simple_repeat 1 26 0 310 191 0 15 chr12 42408326 42408394 -101378061 - MLT1H LTR MaLR 0 549 483 1518 185 41 134 chr12 42408876 42409488 -101376967 + MLT1F1 LTR MaLR 10 567 0 460 298 90 50 chr12 42409520 42409977 -101376478 - MLT1H LTR MaLR -74 475 1 2190 101 0 3 chr12 42411147 42411434 -101375021 - AluSc SINE Alu -23 286 1 43 20 0 0 chr12 42411608 42411658 -101374797 + AT_rich Low_complexity Low_complexity 1 50 0 391 295 33 8 chr12 42412151 42412273 -101374182 - MIR SINE MIR -62 146 22 390 311 20 27 chr12 42412744 42412892 -101373563 - MIR SINE MIR -50 212 66 472 246 109 44 chr12 42413360 42413543 -101372912 - L3 LINE CR1 -10 1567 1373 210 327 159 9 chr12 42413538 42413651 -101372804 + L2 LINE L2 3143 3272 0 * 8185 200 49 15 chr12 42413802 42416910 -101369545 - L1MB7 LINE L1 -29 6653 3443 360 195 25 42 chr12 42416922 42417040 -101369415 + L1M4c LINE L1 2013 2128 -4256 5956 212 53 35 chr12 42417096 42417568 -101368887 - L1MB7 LINE L1 -4543 2103 1641 2295 106 0 3 chr12 42417568 42417871 -101368584 - AluY SINE Alu -9 302 1 5956 212 53 35 chr12 42417871 42419439 -101367016 - L1MB7 LINE L1 -5005 1641 5 449 328 40 17 chr12 42419932 42420109 -101366346 - MER5A DNA MER1_type -1 188 8 180 105 105 53 chr12 42420304 42420342 -101366113 - MER5B DNA MER1_type -26 152 113 349 287 67 27 chr12 42420555 42420778 -101365677 + L1ME3A LINE L1 5699 5930 -240 206 289 19 0 chr12 42421179 42421231 -101365224 + MIR SINE MIR 98 150 -58 328 323 21 10 chr12 42421240 42421432 -101365023 - MER117 DNA MER1_type 0 197 4 184 231 135 0 chr12 42422130 42422182 -101364273 - L2 LINE L2 -372 2942 2884 232 333 51 0 chr12 42422472 42422550 -101363905 + L2 LINE L2 3201 3282 -31 2416 99 48 20 chr12 42422599 42422953 -101363502 + THE1B LTR MaLR 1 364 0 397 259 124 26 chr12 42423269 42423462 -101362993 - MLT1I LTR MaLR -3 406 195 235 299 30 81 chr12 42423720 42423917 -101362538 - L2 LINE L2 -639 2675 2489 219 295 39 13 chr12 42424113 42424191 -101362264 + L2 LINE L2 3180 3259 -54 269 247 32 21 chr12 42424196 42424289 -101362166 + MLT1K LTR MaLR 374 467 -121 2748 16 0 16 chr12 42425326 42425642 -101360813 - AluY SINE Alu 0 311 1 216 309 93 31 chr12 42426105 42426202 -101360253 - L2 LINE L2 -8 3305 3203 1224 242 91 52 chr12 42427510 42428092 -101358363 + L1ME3A LINE L1 5561 6165 -5 1437 163 89 3 chr12 42428099 42428436 -101358019 + HsTC2 DNA Tc2 1527 1892 -6 25 51 0 0 chr12 42428437 42428476 -101357979 + AT_rich Low_complexity Low_complexity 1 39 0 294 345 73 36 chr12 42428805 42428970 -101357485 + L2 LINE L2 3081 3251 -21 1814 161 6 3 chr12 42430989 42431300 -101355155 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 42432381 42432402 -101354053 + AT_rich Low_complexity Low_complexity 1 21 0 216 344 31 10 chr12 42432956 42433052 -101353403 + L2 LINE L2 2640 2737 -577 231 152 0 0 chr12 42433143 42433189 -101353266 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 242 214 71 0 chr12 42433540 42433638 -101352817 + L1ME3A LINE L1 3120 3224 -2922 909 219 59 95 chr12 42433666 42433770 -101352685 + L1ME3A LINE L1 5727 5833 -337 1709 136 46 85 chr12 42433770 42434160 -101352295 - THE1C LTR MaLR 0 375 1 909 219 59 95 chr12 42434160 42434516 -101351939 + L1ME3A LINE L1 5833 6170 0 410 305 75 35 chr12 42434588 42434611 -101351844 - MIR SINE MIR -3 259 238 2778 71 6 0 chr12 42434611 42434964 -101351491 - THE1A LTR MaLR 0 355 1 410 305 75 35 chr12 42434964 42435114 -101351341 - MIR SINE MIR -24 238 79 21 0 0 0 chr12 42435177 42435198 -101351257 + AT_rich Low_complexity Low_complexity 1 21 0 312 345 150 9 chr12 42435548 42435768 -101350687 + L1M4 LINE L1 3607 3857 -2289 837 215 32 117 chr12 42435877 42436193 -101350262 - MLT1H LTR MaLR -195 354 66 2302 173 19 12 chr12 42436216 42436639 -101349816 + MSTB LTR MaLR 1 426 0 9290 159 27 11 chr12 42436640 42438263 -101348192 + MSTB-int LTR MaLR 2 1651 0 2326 191 19 2 chr12 42438263 42438682 -101347773 + MSTB LTR MaLR 1 426 0 247 137 0 39 chr12 42438786 42438837 -101347618 + Alu SINE Alu 253 301 -1 482 296 120 69 chr12 42439110 42439305 -101347150 + L1M4 LINE L1 3974 4158 -1988 782 226 208 0 chr12 42439305 42439579 -101346876 - MER46C DNA MER2_type -3 335 5 482 296 120 69 chr12 42439579 42440169 -101346286 + L1M4 LINE L1 4158 4799 -1347 26 50 0 0 chr12 42440258 42440298 -101346157 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 42440626 42440664 -101345791 + AT_rich Low_complexity Low_complexity 1 38 0 1761 164 27 17 chr12 42440849 42441148 -101345307 + AluJo SINE Alu 1 302 -10 793 137 0 0 chr12 42441622 42441746 -101344709 - L1PA14 LINE L1 -2 6159 6036 190 358 77 24 chr12 42441890 42442097 -101344358 + L3 LINE CR1 744 961 -616 717 333 184 7 chr12 42442151 42442569 -101343886 + L3 LINE CR1 1082 1573 -4 485 298 88 11 chr12 42442693 42442874 -101343581 + MIR SINE MIR 20 214 -48 1343 258 130 27 chr12 42443657 42444230 -101342225 + L2 LINE L2 2691 3312 -1 336 289 77 10 chr12 42444236 42444340 -101342115 + MIR3 SINE MIR 89 199 -9 215 256 179 0 chr12 42444995 42445073 -101341382 + L2 LINE L2 3219 3310 -3 264 321 19 9 chr12 42445337 42445443 -101341012 + MIR SINE MIR 28 134 -128 294 232 49 0 chr12 42446457 42446539 -101339916 + MER94 DNA DNA 8 93 -41 29 0 0 0 chr12 42448839 42448868 -101337587 + AT_rich Low_complexity Low_complexity 1 29 0 374 198 246 8 chr12 42449953 42450079 -101336376 - MIR3 SINE MIR -23 185 30 1898 152 3 10 chr12 42450817 42451106 -101335349 + AluJb SINE Alu 1 287 -25 201 39 0 0 chr12 42451192 42451218 -101335237 + (CA)n Simple_repeat Simple_repeat 1 26 0 418 273 34 113 chr12 42451897 42452135 -101334320 + L2 LINE L2 3045 3263 -9 * 498 284 16 0 chr12 42452106 42452233 -101334222 - L2 LINE L2 0 3313 3185 769 247 156 40 chr12 42452236 42452641 -101333814 + LTR16A1 LTR ERVL 6 457 0 506 319 73 13 chr12 42452645 42452958 -101333497 - L2 LINE L2 -124 3189 2858 2234 102 0 55 chr12 42453007 42453332 -101333123 + AluSg SINE Alu 1 307 -3 201 147 0 0 chr12 42453767 42453801 -101332654 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 203 167 0 21 chr12 42453818 42453866 -101332589 + T-rich Low_complexity Low_complexity 2 48 0 761 264 42 14 chr12 42454217 42454433 -101332022 - MIR SINE MIR -34 228 7 208 304 72 14 chr12 42454490 42454559 -101331896 + L2 LINE L2 3142 3214 -58 21 0 0 0 chr12 42457185 42457206 -101329249 + AT_rich Low_complexity Low_complexity 1 21 0 425 191 34 0 chr12 42457219 42457308 -101329147 + L1MC1 LINE L1 36 127 -6299 1365 156 35 57 chr12 42457308 42457331 -101329124 - MSTB1 LTR MaLR -2 430 408 367 60 0 0 chr12 42457331 42457381 -101329074 + L1PA3 LINE L1 6103 6152 -3 1365 156 35 57 chr12 42457381 42457672 -101328783 - MSTB1 LTR MaLR -24 408 123 2379 87 0 0 chr12 42457697 42457996 -101328459 - AluY SINE Alu -12 299 1 877 114 101 6 chr12 42458011 42458169 -101328286 + THE1C LTR MaLR 203 375 0 10163 118 26 40 chr12 42458169 42459773 -101326682 + THE1C-int LTR MaLR 1 1580 0 1951 137 55 27 chr12 42459773 42460138 -101326317 + THE1C LTR MaLR 1 375 0 3912 214 81 66 chr12 42460141 42461800 -101324655 + L1MC1 LINE L1 622 2256 -4170 2116 110 41 0 chr12 42461800 42462092 -101324363 + AluSx SINE Alu 1 304 -8 3912 214 81 66 chr12 42462092 42462279 -101324176 + L1MC1 LINE L1 2256 2439 -3987 2004 143 3 10 chr12 42462279 42462564 -101323891 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr12 42462564 42462588 -101323867 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2004 143 3 10 chr12 42462588 42462602 -101323853 + AluSx SINE Alu 285 298 -14 1951 119 3 61 chr12 42462609 42462936 -101323519 + AluSx SINE Alu 5 312 0 3912 214 81 66 chr12 42462936 42463174 -101323281 + L1MC1 LINE L1 2444 2724 -3702 14302 170 13 2 chr12 42463175 42470318 -101316137 - L1PA14 LINE L1 -1 7598 1 5878 222 25 58 chr12 42470320 42473938 -101312517 + L1MC1 LINE L1 2714 6089 -524 597 203 20 0 chr12 42473952 42474100 -101312355 + L1M4 LINE L1 4404 4554 -1592 2201 144 71 22 chr12 42474154 42474565 -101311890 + L1MC1 LINE L1 6164 6594 -19 261 0 0 0 chr12 42474764 42474793 -101311662 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2516 83 3 3 chr12 42475862 42476174 -101310281 - AluSp SINE Alu -1 312 1 21 0 0 0 chr12 42476644 42476665 -101309790 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 42476751 42476776 -101309679 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr12 42477188 42477214 -101309241 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 258 105 0 0 chr12 42477213 42477251 -101309204 + (CA)n Simple_repeat Simple_repeat 1 38 0 423 186 29 69 chr12 42477817 42477919 -101308536 + MER5A DNA MER1_type 1 98 -91 193 307 93 0 chr12 42480157 42480232 -101306223 + MIR3 SINE MIR 119 200 -8 204 261 0 72 chr12 42487484 42487553 -101298902 - L2 LINE L2 -4 3268 3205 26 64 0 0 chr12 42487659 42487706 -101298749 + AT_rich Low_complexity Low_complexity 1 47 0 1822 164 42 0 chr12 42488020 42488332 -101298123 - MER7A DNA MER2_type 0 346 24 541 125 0 0 chr12 42488332 42488420 -101298035 + L1MB4 LINE L1 6093 6180 0 15883 85 3 15 chr12 42488647 42490967 -101295488 + L1PA6 LINE L1 1379 3669 -2477 6751 77 3 1 chr12 42490965 42491883 -101294572 + L1PA6 LINE L1 5235 6154 0 * 6055 83 0 2 chr12 42491885 42492703 -101293752 + L1PA8 LINE L1 5347 6162 -10 2323 200 27 0 chr12 42492712 42493193 -101293262 + L1MB5 LINE L1 5666 6159 -15 23 0 0 0 chr12 42495648 42495671 -101290784 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 42496682 42496703 -101289752 + AT_rich Low_complexity Low_complexity 1 21 0 249 341 29 58 chr12 42496945 42497083 -101289372 - L2 LINE L2 -22 3250 3117 602 259 54 46 chr12 42497098 42497357 -101289098 + MIR SINE MIR 2 262 0 264 30 0 0 chr12 42497465 42497498 -101288957 + (GA)n Simple_repeat Simple_repeat 2 34 0 228 371 35 9 chr12 42497968 42498084 -101288371 - L2 LINE L2 0 3313 3195 1205 182 19 9 chr12 42500832 42501046 -101285409 + MER20 DNA MER1_type 4 219 0 896 198 44 26 chr12 42501055 42501328 -101285127 - MER33 DNA MER1_type 0 324 47 248 0 0 0 chr12 42501598 42501634 -101284821 + L1PA4 LINE L1 6119 6154 -1 640 149 34 20 chr12 42502852 42502879 -101283576 + L1ME LINE L1 5281 5306 -860 2139 93 0 3 chr12 42502879 42503179 -101283276 + L1PA10 LINE L1 5866 6164 -4 640 149 34 20 chr12 42503179 42503316 -101283139 + L1ME LINE L1 5306 5441 -725 * 12137 205 37 34 chr12 42503305 42505036 -101281419 + L1MA5A LINE L1 3 1727 -5212 2225 97 3 3 chr12 42505036 42505325 -101281130 + AluSp SINE Alu 8 296 -17 12137 205 37 34 chr12 42505325 42506940 -101279515 + L1MA5A LINE L1 1727 3336 -3603 1282 124 0 0 chr12 42506940 42507117 -101279338 - AluY SINE Alu -13 298 122 12137 205 37 34 chr12 42507117 42509990 -101276465 + L1MA5A LINE L1 3336 6414 -525 31 20 0 20 chr12 42510011 42510035 -101276420 + AT_rich Low_complexity Low_complexity 1 24 -24 2012 119 50 6 chr12 42510035 42510378 -101276077 + L1MA5A LINE L1 6577 6934 -5 31 20 0 20 chr12 42510378 42510402 -101276053 + AT_rich Low_complexity Low_complexity 24 48 0 834 106 0 0 chr12 42510402 42510525 -101275930 + L1MB3 LINE L1 6061 6183 0 277 322 83 8 chr12 42510677 42510798 -101275657 + L2 LINE L2 2260 2389 -925 231 326 220 9 chr12 42510958 42511185 -101275270 + L2 LINE L2 2438 2712 -602 2768 110 55 2 chr12 42511388 42511806 -101274649 - MER4A LTR ERV1 -26 638 199 1576 100 0 0 chr12 42511808 42512008 -101274447 - AluSq SINE Alu -113 200 1 773 112 0 0 chr12 42512008 42512124 -101274331 - MER4A LTR ERV1 -548 116 1 671 157 16 8 chr12 42512153 42512274 -101274181 - FLAM_A SINE Alu -6 136 15 22 56 0 0 chr12 42512612 42512648 -101273807 + AT_rich Low_complexity Low_complexity 1 36 0 363 311 62 43 chr12 42512909 42513166 -101273289 + L1 LINE L1 4159 4420 -1726 237 316 163 32 chr12 42513389 42513579 -101272876 + L2 LINE L2 3056 3270 -2 * 541 378 40 3 chr12 42513572 42513874 -101272581 + L3 LINE CR1 518 830 -747 21 0 0 0 chr12 42515109 42515130 -101271325 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 42517198 42517235 -101269220 + AT_rich Low_complexity Low_complexity 1 37 0 254 203 40 40 chr12 42518365 42518439 -101268016 + MIR SINE MIR 88 161 -101 181 189 0 27 chr12 42519032 42519069 -101267386 + L2 LINE L2 3226 3261 -11 442 18 0 0 chr12 42519594 42519649 -101266806 + L1PA6 LINE L1 6095 6149 -5 288 0 0 0 chr12 42519960 42519992 -101266463 + (TAA)n Simple_repeat Simple_repeat 2 33 0 397 298 89 0 chr12 42520755 42520879 -101265576 - L2 LINE L2 0 3313 3179 2186 134 39 35 chr12 42521278 42521711 -101264744 + L1MA8 LINE L1 5854 6288 -3 660 193 165 71 chr12 42521748 42521960 -101264495 - MIR SINE MIR -26 236 5 337 70 0 0 chr12 42522628 42522671 -101263784 - Alu SINE Alu -259 43 1 210 180 0 20 chr12 42522700 42522750 -101263705 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 297 232 0 14 chr12 42523220 42523289 -101263166 - MIR SINE MIR -113 149 82 1035 167 59 21 chr12 42523764 42523950 -101262505 + Tigger7 DNA MER2_type 32 224 -2263 651 130 0 0 chr12 42523945 42524037 -101262418 + Tigger7 DNA MER2_type 2374 2465 -22 * 187 330 43 0 chr12 42524137 42524231 -101262224 - L2 LINE L2 -584 2730 2633 2274 113 0 3 chr12 42524370 42524681 -101261774 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 42526581 42526602 -101259853 + AT_rich Low_complexity Low_complexity 1 21 0 859 290 52 8 chr12 42527261 42527509 -101258946 + MIR SINE MIR 4 262 0 201 330 97 37 chr12 42527507 42527807 -101258648 + L2 LINE L2 2410 2727 -587 * 39845 62 4 2 chr12 42527830 42533955 -101252500 + L1PA5 LINE L1 11 6153 -1 297 283 40 20 chr12 42534327 42534426 -101252029 - L2 LINE L2 0 3272 3172 349 288 53 45 chr12 42534493 42534625 -101251830 - MIR SINE MIR -62 200 68 520 298 40 31 chr12 42534635 42534860 -101251595 + MIR SINE MIR 2 228 -34 216 293 49 12 chr12 42535534 42535616 -101250839 - MIR SINE MIR -127 135 51 2614 119 41 7 chr12 42537174 42537587 -101248868 + MSTA LTR MaLR 2 428 0 325 265 0 0 chr12 42537870 42537938 -101248517 + L2 LINE L2 3246 3313 0 300 276 11 0 chr12 42539323 42539410 -101247045 + MIR SINE MIR 173 260 -2 201 74 0 0 chr12 42540198 42540225 -101246230 + (TAA)n Simple_repeat Simple_repeat 2 28 0 253 237 119 42 chr12 42540860 42540978 -101245477 - L1ME4a LINE L1 -31 6090 5964 350 308 133 51 chr12 42541116 42541626 -101244829 + HAL1 LINE L1 114 665 -1842 259 125 21 0 chr12 42541719 42541767 -101244688 - MER52C LTR ERV1 0 1278 1230 2625 197 95 29 chr12 42541772 42542942 -101243513 - MER52A LTR ERV1 -243 1512 203 225 284 0 0 chr12 42543525 42543592 -101242863 - MER52A LTR ERV1 -1688 67 1 491 253 60 79 chr12 42543620 42544103 -101242352 + HAL1 LINE L1 793 1266 -1241 35 0 0 0 chr12 42544120 42544155 -101242300 + AT_rich Low_complexity Low_complexity 1 35 0 6233 156 25 13 chr12 42544155 42545657 -101240798 - L1MC1 LINE L1 -3 6330 4813 1236 247 17 39 chr12 42545657 42546139 -101240316 - L1MC1 LINE L1 -1621 4525 4055 2757 236 47 23 chr12 42546246 42546336 -101240119 + L1ME1 LINE L1 5150 5236 -930 1609 220 145 39 chr12 42546336 42546846 -101239609 - MLT1F1 LTR MaLR -1 566 3 2757 236 47 23 chr12 42546846 42547752 -101238703 + L1ME1 LINE L1 5236 6161 -5 426 271 103 19 chr12 42548031 42548186 -101238269 + MIR SINE MIR 14 181 -81 42160 40 1 1 chr12 42548187 42554333 -101232122 + L1PA3 LINE L1 7 6152 -3 3270 185 8 27 chr12 42555022 42556192 -101230263 + L1MC1 LINE L1 4668 5809 -524 597 203 20 0 chr12 42556206 42556354 -101230101 + L1M4 LINE L1 4404 4554 -1592 2201 144 71 22 chr12 42556408 42556819 -101229636 + L1MC1 LINE L1 5884 6314 -19 288 0 0 0 chr12 42557018 42557050 -101229405 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2507 84 3 3 chr12 42558119 42558430 -101228025 - AluSp SINE Alu -2 311 1 21 0 0 0 chr12 42558900 42558921 -101227534 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 42559007 42559031 -101227424 + AT_rich Low_complexity Low_complexity 1 24 0 201 39 0 0 chr12 42559443 42559469 -101226986 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 240 111 0 0 chr12 42559468 42559504 -101226951 + (CA)n Simple_repeat Simple_repeat 1 36 0 873 232 0 26 chr12 42560067 42560257 -101226198 + MER5A DNA MER1_type 1 185 -4 279 114 0 0 chr12 42560511 42560555 -101225900 + (CAT)n Simple_repeat Simple_repeat 1 44 0 688 271 4 59 chr12 42560558 42560794 -101225661 - MIR SINE MIR -8 254 32 201 324 15 0 chr12 42560832 42560900 -101225555 + MIR SINE MIR 11 79 -183 221 325 38 0 chr12 42561101 42561181 -101225274 + L2 LINE L2 2833 2915 -399 253 322 117 71 chr12 42561221 42561504 -101224951 + L2 LINE L2 2977 3272 0 291 225 38 0 chr12 42562267 42562347 -101224108 + (TA)n Simple_repeat Simple_repeat 1 83 0 194 128 26 0 chr12 42562975 42563014 -101223441 + GA-rich Low_complexity Low_complexity 1 40 0 1290 248 50 59 chr12 42563116 42563520 -101222935 + L2 LINE L2 2914 3313 0 1720 170 0 26 chr12 42563810 42564116 -101222339 - AluJb SINE Alu -14 298 1 25899 86 4 5 chr12 42565091 42566768 -101219687 + L1PA7 LINE L1 1518 3195 -2959 1572 141 122 11 chr12 42566768 42567031 -101219424 + AluSc SINE Alu 1 292 -17 25899 86 4 5 chr12 42567031 42569993 -101216462 + L1PA7 LINE L1 3195 6154 0 1552 220 142 13 chr12 42570002 42571057 -101215398 + L1M4 LINE L1 1719 2914 -3468 2169 120 0 3 chr12 42571840 42572131 -101214324 - AluSx SINE Alu -20 292 3 192 415 65 24 chr12 42572217 42572340 -101214115 - MIR3 SINE MIR -68 140 13 401 169 12 0 chr12 42572979 42573062 -101213393 + CT-rich Low_complexity Low_complexity 4 87 0 1135 310 101 26 chr12 42573131 42573793 -101212662 + L2 LINE L2 1936 2647 -667 195 279 103 0 chr12 42574264 42574332 -101212123 + L2 LINE L2 3198 3272 0 2348 71 0 35 chr12 42574526 42574837 -101211618 - AluY SINE Alu -11 300 1 245 254 70 0 chr12 42574897 42574968 -101211487 - MIR SINE MIR -90 172 97 1218 218 74 12 chr12 42575079 42575497 -101210958 + L1M4 LINE L1 4776 5219 -1163 1856 144 15 15 chr12 42575532 42575866 -101210589 + MER61A LTR ERV1 8 341 -2 291 255 9 9 chr12 42575888 42575994 -101210461 + L1M4 LINE L1 5228 5333 -1049 12027 138 41 23 chr12 42576139 42578966 -101207489 - L1P3 LINE L1 -3198 3263 353 360 0 0 0 chr12 42578966 42579006 -101207449 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 12027 138 41 23 chr12 42579006 42579356 -101207099 - L1P3 LINE L1 -6108 353 11 1084 175 18 45 chr12 42579354 42579565 -101206890 - L1M3 LINE L1 -503 5677 5481 * 2204 108 0 7 chr12 42579565 42579862 -101206593 + AluSc SINE Alu 1 295 -14 1084 175 18 45 chr12 42579862 42579934 -101206521 - L1M3 LINE L1 -699 5481 5409 1168 158 43 32 chr12 42580571 42580992 -101205463 - L1M3 LINE L1 -731 5443 5025 906 261 36 30 chr12 42580993 42581433 -101205022 - L1M4 LINE L1 -2971 4237 3795 3441 199 33 13 chr12 42581922 42582706 -101203749 - L1P LINE L1 -5336 810 11 13351 101 6 3 chr12 42582714 42584995 -101201460 - L1P LINE L1 -776 5370 3085 247 321 161 22 chr12 42585431 42585568 -101200887 + MIR3 SINE MIR 2 157 -51 254 279 0 23 chr12 42585717 42585803 -101200652 - MIR SINE MIR -2 260 177 516 297 147 23 chr12 42585816 42586075 -101200380 - LTR67 LTR ERVL 0 557 267 315 277 153 15 chr12 42586121 42586258 -101200197 - LTR67 LTR ERVL -400 157 2 387 273 97 16 chr12 42586271 42586419 -101200036 - MIR SINE MIR -68 140 13 2266 92 27 0 chr12 42588291 42588583 -101197872 - AluY SINE Alu -11 300 1 188 205 26 0 chr12 42588853 42588892 -101197563 - MIR SINE MIR -146 116 77 7049 116 36 6 chr12 42589006 42590414 -101196041 + L1MA2 LINE L1 4854 6304 0 198 361 8 42 chr12 42590541 42590660 -101195795 + L2 LINE L2 2939 3053 -219 180 0 0 0 chr12 42590824 42590844 -101195611 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7299 267 53 13 chr12 42591191 42593173 -101193282 - L1M4 LINE L1 -5118 2091 1 3151 225 48 56 chr12 42593261 42594443 -101192012 + L1M4 LINE L1 825 1998 -4648 * 12337 126 10 31 chr12 42594442 42597007 -101189448 + L1P3 LINE L1 1 2567 -3894 404 143 12 0 chr12 42647852 42647936 -101138519 + CT-rich Low_complexity Low_complexity 3 87 0 235 308 0 0 chr12 42647938 42648003 -101138452 - L2 LINE L2 -1 3271 3207 1099 283 114 11 chr12 42648007 42648927 -101137528 - L1ME LINE L1 -503 5659 4640 518 333 22 48 chr12 42649091 42649322 -101137133 - MIR SINE MIR -18 244 20 369 0 0 0 chr12 42649676 42649717 -101136738 + (TG)n Simple_repeat Simple_repeat 1 41 0 1801 138 88 16 chr12 42649839 42650159 -101136296 + MER61A LTR ERV1 1 343 0 565 247 78 18 chr12 42651417 42651583 -101134872 + MER91A DNA MER1_type 1 176 -20 360 279 260 5 chr12 42652089 42652293 -101134162 - MIR SINE MIR -6 256 1 279 0 0 0 chr12 42653271 42653302 -101133153 + (TG)n Simple_repeat Simple_repeat 2 32 0 471 324 41 18 chr12 42653765 42653935 -101132520 + MIR3 SINE MIR 24 197 -11 837 169 59 18 chr12 42654298 42654517 -101131938 + Charlie1 DNA MER1_type 2533 2760 -1 684 231 84 74 chr12 42654521 42654724 -101131731 + MIR SINE MIR 12 216 -46 194 91 30 0 chr12 42654776 42654809 -101131646 + (GTTTG)n Simple_repeat Simple_repeat 4 37 0 293 357 0 0 chr12 42655462 42655560 -101130895 - MIR SINE MIR -111 151 54 382 0 0 0 chr12 42656290 42656337 -101130118 - MADE1 DNA Mariner -33 47 1 25 0 0 0 chr12 42656511 42656536 -101129919 + AT_rich Low_complexity Low_complexity 1 25 0 479 174 132 0 chr12 42656537 42656658 -101129797 + MER3 DNA MER1_type 73 209 0 231 185 77 0 chr12 42656618 42656683 -101129772 - MER3 DNA MER1_type -120 89 20 * 632 235 164 18 chr12 42656950 42657286 -101129169 + MER113 DNA MER1_type? 91 475 -46 344 224 0 0 chr12 42657296 42657372 -101129083 - MER113 DNA MER1_type? -445 76 1 220 276 57 76 chr12 42657433 42657538 -101128917 - L2 LINE L2 -31 3282 3180 279 54 0 0 chr12 42659564 42659601 -101126854 + (TG)n Simple_repeat Simple_repeat 2 38 0 1929 251 27 20 chr12 42660370 42660924 -101125531 + L2 LINE L2 1458 2015 -1299 335 212 0 0 chr12 42660938 42661004 -101125451 - AluJ/FRAM SINE Alu -16 286 221 13732 54 7 1 chr12 42661019 42663547 -101122908 - L1PA5 LINE L1 -3 6151 3610 380 287 11 0 chr12 42663568 42663662 -101122793 + L2 LINE L2 2721 2815 -499 359 308 227 31 chr12 42663637 42663786 -101122669 + L2 LINE L2 2924 3042 -271 * 2073 93 0 0 chr12 42663786 42664043 -101122412 + AluSc SINE Alu 36 292 -17 216 0 0 0 chr12 42664043 42664067 -101122388 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 359 308 227 31 chr12 42664067 42664237 -101122218 + L2 LINE L2 3041 3307 -6 2320 79 3 0 chr12 42664776 42665066 -101121389 + AluSp SINE Alu 16 306 -7 228 67 0 0 chr12 42666937 42666967 -101119488 + (A)n Simple_repeat Simple_repeat 1 30 0 243 339 53 47 chr12 42667262 42667433 -101119022 - L2 LINE L2 -12 3260 3089 882 141 65 0 chr12 42667677 42667861 -101118594 - L1MA4 LINE L1 -6 6294 6099 208 154 0 26 chr12 42668510 42668549 -101117906 + MIR SINE MIR 112 149 -113 363 246 67 37 chr12 42668582 42668716 -101117739 - MIR SINE MIR -37 225 88 23 0 0 0 chr12 42669358 42669381 -101117074 + AT_rich Low_complexity Low_complexity 1 23 0 223 242 158 11 chr12 42670299 42670394 -101116061 + MIR3 SINE MIR 98 206 -2 523 263 173 0 chr12 42670655 42670811 -101115644 + MIR SINE MIR 58 240 -22 6002 265 24 8 chr12 42671869 42673919 -101112536 - L1P LINE L1 -2604 3542 1459 195 42 0 0 chr12 42673943 42673967 -101112488 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 2074 112 31 3 chr12 42674080 42674367 -101112088 + AluSq SINE Alu 1 295 -18 347 380 22 13 chr12 42674419 42674643 -101111812 + L1 LINE L1 4205 4430 -1716 2131 132 0 0 chr12 42674708 42675011 -101111444 + AluSx SINE Alu 1 303 -9 215 229 0 21 chr12 42675224 42675272 -101111183 + GA-rich Low_complexity Low_complexity 2 48 0 270 207 0 52 chr12 42675638 42675696 -101110759 + L2 LINE L2 3214 3268 -4 23 33 0 0 chr12 42675888 42675918 -101110537 + AT_rich Low_complexity Low_complexity 1 30 0 631 237 42 45 chr12 42675980 42676202 -101110253 + L1MC4a LINE L1 5675 5809 -355 1879 158 39 0 chr12 42676465 42676801 -101109654 + L1MB1 LINE L1 5803 6151 -17 830 176 0 0 chr12 42676809 42676940 -101109515 + FLAM_A SINE Alu 3 133 0 21 0 0 0 chr12 42676982 42677003 -101109452 + AT_rich Low_complexity Low_complexity 1 21 0 483 255 37 26 chr12 42677705 42678042 -101108413 + L1MC5 LINE L1 7442 7677 -284 505 250 51 0 chr12 42678056 42678240 -101108215 + L1MC4 LINE L1 7847 7985 -10 210 300 180 30 chr12 42679641 42679741 -101106714 + L2 LINE L2 3171 3285 -28 417 134 49 0 chr12 42680457 42680539 -101105916 + MER113 DNA MER1_type? 1 86 -435 521 272 99 67 chr12 42680610 42680897 -101105558 + MLT1H LTR MaLR 49 341 -214 1630 195 96 0 chr12 42680897 42681230 -101105225 - MLT1A1 LTR MaLR 0 365 1 521 272 99 67 chr12 42681230 42681258 -101105197 + MLT1H LTR MaLR 341 367 -188 627 259 76 48 chr12 42682215 42682466 -101103989 + MIR SINE MIR 5 262 0 1779 144 40 17 chr12 42683946 42684294 -101102161 - L1MB8 LINE L1 -171 6007 5652 2102 101 42 3 chr12 42684520 42684806 -101101649 - AluY SINE Alu -14 297 1 226 261 109 22 chr12 42685243 42685269 -101101186 - MLT1I LTR MaLR -9 400 378 249 98 0 0 chr12 42685269 42685310 -101101145 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 226 261 109 22 chr12 42685310 42685375 -101101080 - MLT1I LTR MaLR -31 378 301 900 178 67 57 chr12 42685417 42685732 -101100723 + LTR65 LTR ERV1 9 326 -343 1027 183 22 49 chr12 42687421 42687645 -101098810 + MER20 DNA MER1_type 2 219 0 422 221 112 92 chr12 42688272 42688521 -101097934 - MIR SINE MIR -4 258 5 702 206 76 54 chr12 42688768 42688991 -101097464 - L1MB3 LINE L1 -7 6176 5949 30138 88 11 17 chr12 42689597 42694138 -101092317 - HERVH LTR ERV1 -115 7598 3086 2840 186 37 0 chr12 42694138 42694703 -101091752 + L1MB7 LINE L1 5580 6165 -19 635 266 55 88 chr12 42694994 42695378 -101091077 + LTR33 LTR ERVL 1 371 -150 2971 155 37 40 chr12 42695983 42696633 -101089822 - LTR65 LTR ERV1 -13 656 9 226 261 109 22 chr12 42696675 42696740 -101089715 + MLT1I LTR MaLR 301 378 -31 282 73 0 0 chr12 42696740 42696781 -101089674 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 226 261 109 22 chr12 42696781 42696807 -101089648 + MLT1I LTR MaLR 378 400 -9 2102 101 42 3 chr12 42697243 42697529 -101088926 + AluY SINE Alu 1 297 -14 2072 140 29 68 chr12 42697755 42698211 -101088244 + L1MB7 LINE L1 5652 6089 -95 1743 155 3 10 chr12 42698215 42698524 -101087931 - Tigger3b DNA MER2_type -1 1230 924 2174 132 24 16 chr12 42698526 42698897 -101087558 - THE1C LTR MaLR -1 374 1 * 4678 136 49 17 chr12 42698897 42699110 -101087345 - Tigger3b DNA MER2_type -2101 927 722 2191 123 0 0 chr12 42699110 42699402 -101087053 - AluSc SINE Alu -17 292 1 4678 136 49 17 chr12 42699402 42699490 -101086965 - Tigger3b DNA MER2_type -2306 722 638 2330 104 0 0 chr12 42699490 42699797 -101086658 - AluY SINE Alu -4 307 1 4678 136 49 17 chr12 42699797 42700392 -101086063 - Tigger3b DNA MER2_type -2390 638 1 360 141 0 0 chr12 42700394 42700458 -101085997 + L1MB8 LINE L1 6099 6162 -16 788 273 131 14 chr12 42701212 42701578 -101084877 + MLT1I LTR MaLR 1 409 0 183 233 0 0 chr12 42701990 42702033 -101084422 - L2 LINE L2 0 3313 3271 11995 159 19 19 chr12 42702408 42703373 -101083082 - L1MA3 LINE L1 0 6305 5342 2193 124 0 3 chr12 42703373 42703672 -101082783 + AluSq SINE Alu 1 298 -15 11995 159 19 19 chr12 42703672 42705596 -101080859 - L1MA3 LINE L1 -963 5342 3420 2215 101 7 14 chr12 42705596 42705892 -101080563 + AluSq SINE Alu 1 294 -19 11995 159 19 19 chr12 42705892 42706201 -101080254 - L1MA3 LINE L1 -2885 3420 3113 2224 112 0 10 chr12 42706201 42706513 -101079942 - AluSx SINE Alu -3 309 1 11995 159 19 19 chr12 42706513 42706926 -101079529 - L1MA3 LINE L1 -3192 3113 2676 6255 199 61 19 chr12 42707044 42709560 -101076895 + L1MB5 LINE L1 3544 6166 -8 * 10592 171 54 26 chr12 42709554 42709626 -101076829 + L1MC3 LINE L1 5310 5378 -2407 2032 163 17 6 chr12 42709626 42709988 -101076467 - MER47A DNA MER2_type 0 366 1 10592 171 54 26 chr12 42709988 42711685 -101074770 + L1MC3 LINE L1 5378 7026 -759 2038 115 45 0 chr12 42711685 42711973 -101074482 - AluSx SINE Alu -11 301 1 10592 171 54 26 chr12 42711973 42712343 -101074112 + L1MC3 LINE L1 7026 7384 -401 717 161 0 8 chr12 42712343 42712481 -101073974 + FLAM_C SINE Alu 2 138 0 2418 71 0 19 chr12 42712489 42712800 -101073655 - AluY SINE Alu -5 306 2 10592 171 54 26 chr12 42712800 42713056 -101073399 + L1MC3 LINE L1 7390 7785 0 250 359 21 7 chr12 42713333 42713475 -101072980 + L2 LINE L2 2817 2960 -353 301 253 22 11 chr12 42713475 42713566 -101072889 + CT-rich Low_complexity Low_complexity 1 92 0 418 240 0 0 chr12 42713692 42713796 -101072659 + MER53 DNA DNA 1 104 -85 2758 175 23 9 chr12 42713803 42714334 -101072121 + Tigger1 DNA MER2_type 1 538 -1880 430 248 319 34 chr12 42714338 42714604 -101071851 + L2 LINE L2 1565 1906 -1408 1653 162 96 3 chr12 42714608 42714941 -101071514 - MSTA LTR MaLR -64 364 1 1025 271 19 38 chr12 42714941 42715255 -101071200 + L2 LINE L2 2622 2929 -385 475 167 28 155 chr12 42715311 42715562 -101070893 - L1MC5 LINE L1 -897 7064 6846 374 312 82 43 chr12 42715633 42715777 -101070678 + MIR SINE MIR 23 181 -81 1850 144 23 59 chr12 42715777 42716166 -101070289 + THE1C LTR MaLR 1 375 0 374 312 82 43 chr12 42716166 42716252 -101070203 + MIR SINE MIR 181 262 0 288 294 64 0 chr12 42716344 42716453 -101070002 - MIR SINE MIR 0 262 147 386 319 80 0 chr12 42716502 42716640 -101069815 - MIR SINE MIR -108 154 6 477 193 0 11 chr12 42717461 42717549 -101068906 - AluS SINE Alu -226 87 1 1512 248 6 0 chr12 42718723 42719058 -101067397 - MER58B DNA MER1_type -4 337 1 181 280 0 0 chr12 42720186 42720236 -101066219 - L2 LINE L2 -69 3244 3195 2136 115 0 0 chr12 42720567 42720853 -101065602 + AluSc SINE Alu 3 288 -21 336 314 121 0 chr12 42722018 42722158 -101064297 + MIR SINE MIR 80 236 -26 2165 104 37 0 chr12 42722603 42722901 -101063554 - AluSx SINE Alu -3 309 1 433 260 233 0 chr12 42724155 42724305 -101062150 - MIR3 SINE MIR -14 194 10 695 242 115 6 chr12 42724369 42724551 -101061904 + MIR SINE MIR 15 216 -46 342 300 0 0 chr12 42724838 42724928 -101061527 + L1MC4 LINE L1 6614 6703 -1339 1499 161 45 0 chr12 42725207 42725493 -101060962 - MSTA LTR MaLR 0 428 130 5693 171 23 3 chr12 42725500 42726538 -101059917 - MSTA-int LTR MaLR -592 1059 1 2012 137 153 3 chr12 42726538 42726910 -101059545 - MSTA LTR MaLR 0 428 1 263 284 0 0 chr12 42726971 42727038 -101059417 - MER63A DNA MER1_type 0 210 144 383 224 48 72 chr12 42727283 42727408 -101059047 - MER63A DNA MER1_type 0 123 2 328 200 0 0 chr12 42727422 42727492 -101058963 - L1MC5 LINE L1 -172 7789 7720 744 213 7 26 chr12 42727544 42727699 -101058756 + AluJb SINE Alu 137 288 -24 1915 194 89 99 chr12 42727768 42728065 -101058390 - L1MC5 LINE L1 -387 7574 7276 198 0 0 0 chr12 42728065 42728087 -101058368 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1915 194 89 99 chr12 42728087 42728681 -101057774 - L1MC5 LINE L1 -685 7276 6692 386 249 170 106 chr12 42728747 42729248 -101057207 - L1MC4a LINE L1 -1215 6593 6061 313 253 20 0 chr12 42729377 42729476 -101056979 - L1MC4a LINE L1 -2290 5518 5418 387 313 61 25 chr12 42729518 42729716 -101056739 - L1MC4a LINE L1 -819 5327 5123 285 305 113 21 chr12 42730507 42730648 -101055807 - MIR SINE MIR -76 186 33 1469 150 77 22 chr12 42730703 42730976 -101055479 - AluJo SINE Alu -17 295 8 2098 199 90 36 chr12 42731096 42731684 -101054771 - LTR29 LTR ERV1 -2 620 1 550 184 0 0 chr12 42731786 42731873 -101054582 - AluJ/FLAM SINE Alu -225 87 1 1852 140 128 15 chr12 42731962 42732297 -101054158 - MER83C LTR ERV1 0 373 1 6482 175 38 40 chr12 42732301 42734958 -101051497 - MER83C-int LTR ERV1 -6 4863 12 1641 129 214 7 chr12 42734958 42735267 -101051188 - MER83C LTR ERV1 0 373 1 337 291 36 67 chr12 42735783 42736006 -101050449 + LTR67 LTR ERVL 96 311 -246 1264 47 18 0 chr12 42736579 42736750 -101049705 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 747 183 17 6 chr12 42736757 42736932 -101049523 + CT-rich Low_complexity Low_complexity 3 179 0 * 772 256 80 68 chr12 42736912 42737413 -101049042 + LTR38 LTR ERV1 39 545 -11 732 281 48 51 chr12 42737490 42737821 -101048634 + LTR38-int LTR ERV1 115 444 -1342 314 232 81 0 chr12 42738002 42738101 -101048354 + LTR38-int LTR ERV1 1547 1653 -2632 2653 334 51 41 chr12 42738145 42740738 -101045717 + LTR38-int LTR ERV1 925 4234 -3522 1810 306 51 59 chr12 42741026 42742729 -101043726 + LTR38-int LTR ERV1 4641 6374 -748 6238 80 12 10 chr12 42742729 42743819 -101042636 + L1PA10 LINE L1 5076 6167 0 11503 179 58 18 chr12 42743819 42745786 -101040669 + L1PB1 LINE L1 2767 4654 -2213 1772 83 0 4 chr12 42745786 42746014 -101040441 + AluY SINE Alu 82 308 -3 11503 179 58 18 chr12 42746014 42747967 -101038488 + L1PB1 LINE L1 4654 6859 -8 406 389 9 9 chr12 42747969 42748198 -101038257 + LTR38-int LTR ERV1 6645 6873 -249 1912 215 35 73 chr12 42748452 42749028 -101037427 - MLT2B3 LTR ERVL 0 554 1 628 259 85 41 chr12 42749086 42749426 -101037029 + LTR38 LTR ERV1 89 443 -113 4049 115 35 46 chr12 42749437 42750218 -101036237 + LTR1 LTR ERV1 12 783 -2 404 208 31 0 chr12 42750233 42750329 -101036126 + LTR36 LTR ERV1 503 601 -10 2540 53 0 3 chr12 42750347 42750649 -101035806 - AluY SINE Alu -10 301 1 27 49 0 0 chr12 42751223 42751264 -101035191 + AT_rich Low_complexity Low_complexity 1 41 0 742 281 142 35 chr12 42752831 42752920 -101033535 + L2 LINE L2 2909 2987 -326 2103 144 0 0 chr12 42752920 42753232 -101033223 - AluSx SINE Alu 0 312 1 742 281 142 35 chr12 42753232 42753508 -101032947 + L2 LINE L2 2987 3313 0 241 415 15 15 chr12 42753519 42753649 -101032806 - L2 LINE L2 -2 3270 3141 1700 191 3 3 chr12 42753712 42754011 -101032444 - AluJo SINE Alu -13 299 1 596 108 0 0 chr12 42754035 42754128 -101032327 - L1P LINE L1 -4297 1849 1757 1785 214 18 23 chr12 42754135 42754574 -101031881 - MLT2B3 LTR ERVL -117 437 1 483 313 43 80 chr12 42754774 42755022 -101031433 - HAL1 LINE L1 -742 1765 1532 415 295 9 9 chr12 42755022 42755134 -101031321 - MER81 DNA DNA 0 114 3 483 313 43 80 chr12 42755134 42755237 -101031218 - HAL1 LINE L1 -975 1532 1427 933 284 81 81 chr12 42755258 42755878 -101030577 - HAL1 LINE L1 -1884 623 4 429 283 21 69 chr12 42755878 42756111 -101030344 - L1MEd LINE L1 -5175 944 723 230 177 0 97 chr12 42756203 42756265 -101030190 - L1MEd LINE L1 -5543 576 521 532 295 45 34 chr12 42756355 42756623 -101029832 - L1MEd LINE L1 -5737 382 112 3795 285 39 24 chr12 42756831 42758429 -101028026 + L1PBa LINE L1 3 1624 -5239 * 11797 197 29 34 chr12 42758409 42761095 -101025360 + L1PB3 LINE L1 1 2699 -3512 263 28 28 0 chr12 42761095 42761131 -101025324 + (TA)n Simple_repeat Simple_repeat 1 37 0 11797 197 29 34 chr12 42761131 42764469 -101021986 + L1PB3 LINE L1 2699 5841 -370 762 93 0 0 chr12 42764469 42764577 -101021878 + (TA)n Simple_repeat Simple_repeat 1 108 0 11797 197 29 34 chr12 42764577 42764947 -101021508 + L1PB3 LINE L1 5841 6211 0 1074 226 25 80 chr12 42765496 42765859 -101020596 - MLT1D LTR MaLR 0 505 163 2306 200 60 122 chr12 42765861 42766707 -101019748 + MER21B LTR ERV1 1 794 -69 571 210 31 72 chr12 42766736 42766931 -101019524 - MLT1D LTR MaLR -439 187 1 241 326 80 38 chr12 42766945 42767209 -101019246 - L2 LINE L2 -962 2352 2078 2069 76 0 4 chr12 42767263 42767549 -101018906 - AluSq SINE Alu 0 320 36 1723 155 3 56 chr12 42767557 42767861 -101018594 - AluJb SINE Alu -24 288 1 874 206 0 0 chr12 42768016 42768181 -101018274 + FRAM SINE Alu 1 165 -1 1082 153 12 0 chr12 42768426 42768644 -101017811 + AluSq SINE Alu 140 359 0 245 333 0 0 chr12 42770420 42770492 -101015963 - MIR SINE MIR -71 191 120 198 343 51 81 chr12 42770830 42771162 -101015293 + L2 LINE L2 2437 2758 -556 722 257 105 0 chr12 42771195 42771405 -101015050 - MIR SINE MIR -2 260 29 276 368 9 0 chr12 42772409 42772523 -101013932 - L2 LINE L2 -2 3311 3197 594 134 55 0 chr12 42772937 42773101 -101013354 + GA-rich Low_complexity Low_complexity 1 173 0 314 302 60 40 chr12 42773734 42773883 -101012572 - L2 LINE L2 -1 3312 3161 579 218 163 14 chr12 42774388 42774677 -101011778 - HAL1b LINE L1 -2 1346 1015 23 54 0 0 chr12 42774940 42774977 -101011478 + AT_rich Low_complexity Low_complexity 1 37 0 355 335 180 0 chr12 42774988 42775155 -101011300 - MIR SINE MIR -34 228 32 878 214 47 119 chr12 42775225 42775356 -101011099 - HAL1b LINE L1 -701 647 508 1428 179 95 0 chr12 42775356 42775619 -101010836 - AluJo SINE Alu -24 288 1 878 214 47 119 chr12 42775619 42775636 -101010819 - HAL1b LINE L1 -840 508 491 4075 36 27 11 chr12 42775636 42776159 -101010296 - L1PA8 LINE L1 -1 6171 5641 878 214 47 119 chr12 42776159 42776607 -101009848 - HAL1b LINE L1 -857 491 93 486 280 47 3 chr12 42777352 42777509 -101008946 + MIR SINE MIR 3 173 -61 1375 108 38 0 chr12 42777510 42777696 -101008759 - AluSg/x SINE Alu -12 298 106 403 284 0 0 chr12 42777699 42777794 -101008661 + MIR SINE MIR 168 262 0 3287 180 42 44 chr12 42777949 42778789 -101007666 + L1MD2 LINE L1 5520 6357 -2 1085 87 0 7 chr12 42779148 42779298 -101007157 - THE1B LTR MaLR 0 364 216 589 317 36 27 chr12 42780121 42780342 -101006113 - MIR SINE MIR -37 225 3 571 255 90 79 chr12 42780342 42780620 -101005835 + L2 LINE L2 3030 3310 -3 357 276 49 8 chr12 42781038 42781161 -101005294 - MIR SINE MIR -49 213 86 2021 165 0 14 chr12 42781242 42781593 -101004862 + MER7A DNA MER2_type 2 345 -1 1873 154 78 47 chr12 42782568 42782952 -101003503 + MSTD LTR MaLR 1 396 0 547 300 29 38 chr12 42783011 42783044 -101003411 - MER63A DNA MER1_type -1479 209 177 2384 128 63 28 chr12 42783044 42783306 -101003149 - MER65A LTR ERV1 0 445 194 225 0 0 0 chr12 42783306 42783331 -101003124 + (TA)n Simple_repeat Simple_repeat 2 26 0 387 0 0 0 chr12 42783331 42783374 -101003081 + (TG)n Simple_repeat Simple_repeat 1 43 0 2384 128 63 28 chr12 42783374 42783540 -101002915 - MER65A LTR ERV1 -250 195 1 547 300 29 38 chr12 42783540 42783716 -101002739 - MER63A DNA MER1_type -1511 177 2 7180 130 17 1 chr12 42785942 42788334 -100998121 - L1MA3 LINE L1 0 7724 5294 * 8136 140 31 12 chr12 42788330 42790416 -100996039 - L1MA3 LINE L1 -3224 4341 2214 3084 143 22 0 chr12 42790412 42790917 -100995538 - L1MA3 LINE L1 -6100 1465 950 * 403 301 25 74 chr12 42790930 42791133 -100995322 - L2 LINE L2 -3 3269 3077 635 196 0 0 chr12 42791170 42791277 -100995178 - FLAM_A SINE Alu -25 117 11 2317 69 42 0 chr12 42791393 42791682 -100994773 + AluSq SINE Alu 2 302 -11 1101 285 29 24 chr12 42793431 42793813 -100992642 + MLT1H1 LTR MaLR 56 439 -116 350 200 40 0 chr12 42793933 42794008 -100992447 + MLT1H1 LTR MaLR 448 525 -30 211 331 98 16 chr12 42794559 42794743 -100991712 + L2 LINE L2 3113 3311 -2 352 225 348 0 chr12 42794850 42794988 -100991467 - MIR3 SINE MIR -6 202 17 240 35 0 0 chr12 42795096 42795125 -100991330 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1590 199 4 0 chr12 42795136 42795412 -100991043 - AluJo SINE Alu -35 277 1 369 308 68 0 chr12 42795785 42795902 -100990553 - L2 LINE L2 0 3272 3148 681 266 93 36 chr12 42796617 42796865 -100989590 - MIR SINE MIR 0 262 1 237 296 176 0 chr12 42796874 42797033 -100989422 + L1MC4a LINE L1 4747 4933 -1213 21 0 0 0 chr12 42797198 42797219 -100989236 + AT_rich Low_complexity Low_complexity 1 21 0 257 301 86 16 chr12 42797252 42797438 -100989017 + L1MC4a LINE L1 5270 5468 -2340 340 318 61 50 chr12 42797534 42797930 -100988525 + L1MC4a LINE L1 5512 5911 -1897 1953 121 63 33 chr12 42798474 42798838 -100987617 + THE1C LTR MaLR 1 375 0 298 303 174 7 chr12 42798838 42798993 -100987462 + L2 LINE L2 3128 3308 -5 296 236 132 27 chr12 42799406 42799731 -100986724 - L1MC4a LINE L1 -13 6108 5748 877 246 29 10 chr12 42799755 42799962 -100986493 + MIR SINE MIR 35 245 -17 188 178 0 178 chr12 42801422 42801495 -100984960 + L3 LINE CR1 250 309 -1268 470 232 105 55 chr12 42802001 42802182 -100984273 + MIR3 SINE MIR 13 202 -6 1514 174 35 65 chr12 42802260 42802663 -100983792 + L1MB7 LINE L1 5793 6183 -1 236 169 0 17 chr12 42802673 42802732 -100983723 + (TATG)n Simple_repeat Simple_repeat 3 60 0 212 189 61 61 chr12 42803409 42803588 -100982867 + (TTTAA)n Simple_repeat Simple_repeat 1 179 0 426 139 14 0 chr12 42803590 42803661 -100982794 + Tigger5 DNA MER2_type 7 78 -2245 308 130 56 0 chr12 42803661 42803715 -100982740 - Tigger5 DNA MER2_type -3 2320 2264 * 395 161 0 0 chr12 42803713 42803775 -100982680 + Tigger5 DNA MER2_type 2262 2323 0 614 282 101 21 chr12 42803805 42804280 -100982175 - HAL1 LINE L1 -739 1768 1256 2334 99 3 0 chr12 42804380 42804692 -100981763 - AluSq SINE Alu 0 313 1 250 323 116 53 chr12 42805505 42805694 -100980761 + MIR SINE MIR 18 218 -44 22 0 0 0 chr12 42807939 42807961 -100978494 + AT_rich Low_complexity Low_complexity 1 22 0 862 236 21 29 chr12 42808744 42808985 -100977470 - MIR SINE MIR -15 247 9 210 150 0 0 chr12 42809055 42809095 -100977360 + (CA)n Simple_repeat Simple_repeat 2 41 0 4767 36 0 12 chr12 42810466 42811134 -100975321 - L1PA5 LINE L1 -296 5858 5199 2417 53 0 3 chr12 42811134 42811435 -100975020 + L1PA5 LINE L1 5848 6149 -5 410 309 61 17 chr12 42811729 42811910 -100974545 - MER5A DNA MER1_type 0 189 1 183 156 0 0 chr12 42812117 42812149 -100974306 + (CA)n Simple_repeat Simple_repeat 2 33 0 1011 274 79 83 chr12 42812599 42812783 -100973672 - L2 LINE L2 -16 3297 3114 273 57 0 0 chr12 42812783 42812818 -100973637 + (TG)n Simple_repeat Simple_repeat 2 36 0 1011 274 79 83 chr12 42812818 42812954 -100973501 - L2 LINE L2 -199 3114 2979 1491 158 97 0 chr12 42812954 42813213 -100973242 + AluJo SINE Alu 2 285 -27 342 80 0 0 chr12 42813213 42813263 -100973192 + (CA)n Simple_repeat Simple_repeat 2 51 0 1011 274 79 83 chr12 42813263 42813422 -100973033 - L2 LINE L2 -332 2981 2818 * 3353 250 152 18 chr12 42813420 42814614 -100971841 - L2 LINE L2 -839 2475 1123 1239 252 78 30 chr12 42814619 42815092 -100971363 - LTR33 LTR ERVL -21 500 5 394 250 0 23 chr12 42815092 42815180 -100971275 - L2 LINE L2 -2185 1129 1044 14099 130 32 2 chr12 42815183 42817514 -100968941 - Tigger1 DNA MER2_type -1 2417 16 1112 243 76 7 chr12 42817524 42817828 -100968627 - L2 LINE L2 -2270 1044 720 1997 128 3 29 chr12 42818560 42818866 -100967589 - AluSx SINE Alu -14 298 1 268 311 18 0 chr12 42819106 42819270 -100967185 + L1MC/D LINE L1 4370 4536 -1610 409 323 67 56 chr12 42819585 42819941 -100966514 + L1MC/D LINE L1 4883 5242 -904 1203 114 0 0 chr12 42819958 42820116 -100966339 + FRAM SINE Alu 1 158 -18 253 342 53 38 chr12 42820172 42820514 -100965941 + L1MC/D LINE L1 5296 5642 -520 268 301 31 41 chr12 42820577 42820773 -100965682 + L1MC/D LINE L1 5690 5883 -1925 457 299 122 27 chr12 42820782 42821003 -100965452 - MIR SINE MIR -13 249 8 25 0 0 0 chr12 42821253 42821278 -100965177 + AT_rich Low_complexity Low_complexity 1 25 0 1059 257 94 58 chr12 42821385 42821964 -100964491 - L2 LINE L2 0 3313 2708 390 274 47 16 chr12 42822511 42822701 -100963754 - LTR16C LTR ERVL -1 490 295 239 313 12 24 chr12 42823183 42823266 -100963189 + Charlie8 DNA MER1_type 2 83 -2334 1529 172 65 28 chr12 42823466 42823757 -100962698 - AluJo SINE Alu -10 302 1 508 173 261 81 chr12 42823810 42823846 -100962609 - LTR37B LTR ERV1 -100 368 340 1383 209 49 3 chr12 42823846 42824133 -100962322 + AluJb SINE Alu 1 300 -12 508 173 261 81 chr12 42824133 42824356 -100962099 - LTR37B LTR ERV1 -128 340 62 992 82 63 13 chr12 42824400 42824559 -100961896 - L1PA13 LINE L1 -4 6159 5993 339 284 53 0 chr12 42824560 42824655 -100961800 - MER5B DNA MER1_type -40 138 39 547 265 84 53 chr12 42825010 42825420 -100961035 - L1ME LINE L1 -493 5671 5254 823 274 68 69 chr12 42826985 42827561 -100958894 + MER31-int LTR ERV1 3327 3901 -1035 501 264 39 39 chr12 42827571 42827753 -100958702 + MER31-int LTR ERV1 3878 4059 -877 363 261 43 14 chr12 42827855 42827993 -100958462 + MER31-int LTR ERV1 4104 4245 -691 992 180 49 70 chr12 42828077 42828222 -100958233 + LTR37A LTR ERV1 54 201 -225 906 65 16 0 chr12 42828222 42828346 -100958109 + L1PA2 LINE L1 6026 6151 -4 992 180 49 70 chr12 42828346 42828527 -100957928 + LTR37A LTR ERV1 201 373 -53 300 277 46 31 chr12 42828575 42828705 -100957750 - L1ME LINE L1 -1133 5013 4882 2339 186 26 72 chr12 42829053 42829633 -100956822 + MLT2B3 LTR ERVL 2 554 0 727 168 168 6 chr12 42832718 42832879 -100953576 - MER5A DNA MER1_type -2 187 1 2381 92 3 0 chr12 42837206 42837541 -100948914 + THE1B LTR MaLR 1 336 -28 34145 97 10 10 chr12 42837544 42843680 -100942775 - L1PA6 LINE L1 -11 6143 11 333 106 0 0 chr12 42843683 42843730 -100942725 + THE1B LTR MaLR 318 364 0 2131 73 16 73 chr12 42844803 42845119 -100941336 + AluY SINE Alu 1 298 -13 477 0 0 0 chr12 42846903 42846956 -100939499 + (TG)n Simple_repeat Simple_repeat 2 54 0 1757 148 0 50 chr12 42846956 42847254 -100939201 - AluJo SINE Alu -29 283 1 302 209 0 15 chr12 42847977 42848044 -100938411 - L1MCa LINE L1 -4362 2064 1999 233 310 35 10 chr12 42849087 42849216 -100937239 - MIR SINE MIR -111 151 20 2071 146 3 0 chr12 42849506 42849814 -100936641 + AluJb SINE Alu 1 309 -3 27 73 0 0 chr12 42852187 42852242 -100934213 + AT_rich Low_complexity Low_complexity 1 55 0 25 65 0 0 chr12 42853841 42853887 -100932568 + AT_rich Low_complexity Low_complexity 1 46 0 219 370 30 10 chr12 42857129 42857229 -100929226 + MIR3 SINE MIR 87 188 -20 184 267 58 64 chr12 42857673 42857845 -100928610 + L2 LINE L2 2931 3101 -171 2193 115 36 38 chr12 42858132 42858497 -100927958 + THE1B LTR MaLR 1 364 0 1031 327 166 37 chr12 42860270 42861111 -100925344 - L3 LINE CR1 -2 1575 626 387 284 192 35 chr12 42861108 42861369 -100925086 + L2 LINE L2 2401 2702 -612 * 424 313 75 9 chr12 42861529 42861743 -100924712 - L3 LINE CR1 -1108 469 242 479 230 50 4 chr12 42862124 42862302 -100924153 + L1ME1 LINE L1 6030 6349 0 374 197 0 0 chr12 42862638 42862709 -100923746 - MER5A DNA MER1_type -100 89 19 1896 86 21 4 chr12 42863012 42863255 -100923200 - AluSx SINE Alu -17 295 49 2029 112 0 30 chr12 42864164 42864467 -100921988 + AluSx SINE Alu 1 294 -18 754 211 184 9 chr12 42864676 42864899 -100921556 - MIR SINE MIR 0 262 1 327 237 123 61 chr12 42866124 42866188 -100920267 + MIR SINE MIR 64 123 -139 3265 162 19 70 chr12 42866188 42866916 -100919539 - LTR8 LTR ERV1 0 691 1 327 237 123 61 chr12 42866916 42866965 -100919490 + MIR SINE MIR 123 184 -78 353 236 18 27 chr12 42866997 42867107 -100919348 - MER58 DNA MER1_type -2311 109 1 205 191 0 0 chr12 42868787 42868829 -100917626 + GA-rich Low_complexity Low_complexity 1 42 0 374 337 48 82 chr12 42869217 42869671 -100916784 - L2 LINE L2 0 3272 2834 226 336 10 0 chr12 42870141 42870245 -100916210 - L1MC/D LINE L1 -1950 5858 5754 601 227 97 27 chr12 42870729 42870914 -100915541 + MIR SINE MIR 9 206 -56 243 0 0 0 chr12 42871048 42871075 -100915380 + (CA)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr12 42871412 42871436 -100915019 + AT_rich Low_complexity Low_complexity 1 24 0 1581 268 111 26 chr12 42872642 42873411 -100913044 + HAL1 LINE L1 74 907 -1600 1164 210 72 34 chr12 42873420 42873806 -100912649 + L1MC5 LINE L1 7390 7790 -171 1906 223 131 43 chr12 42873904 42874208 -100912247 + HAL1 LINE L1 961 1237 -1270 2081 88 49 33 chr12 42874208 42874515 -100911940 - AluSx SINE Alu 0 312 1 1906 223 131 43 chr12 42874515 42875017 -100911438 + HAL1 LINE L1 1237 1838 -669 532 198 108 18 chr12 42875018 42875129 -100911326 + MIR SINE MIR 109 229 -33 446 341 12 12 chr12 42875314 42875478 -100910977 - MIR3 SINE MIR -1 207 44 21 36 0 0 chr12 42876641 42876669 -100909786 + AT_rich Low_complexity Low_complexity 1 28 0 221 347 107 33 chr12 42877385 42877535 -100908920 + L2 LINE L2 3087 3247 -25 263 241 0 0 chr12 42877808 42877866 -100908589 - L2 LINE L2 -14 3258 3201 448 275 22 14 chr12 42878039 42878177 -100908278 + MIR SINE MIR 116 254 -8 3832 139 39 5 chr12 42878389 42879035 -100907420 + L1PB4 LINE L1 5488 6155 -1 1566 136 152 0 chr12 42879261 42879511 -100906944 - AluSg SINE Alu -22 288 1 1265 166 92 37 chr12 42880265 42880591 -100905864 + MER2 DNA MER2_type 1 344 0 180 0 0 0 chr12 42880609 42880629 -100905826 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1714 178 0 17 chr12 42880632 42880919 -100905536 - AluJo SINE Alu -30 282 1 2232 61 0 0 chr12 42882031 42882310 -100904145 - AluY SINE Alu 0 311 33 630 236 118 47 chr12 42883664 42883808 -100902647 - MIR SINE MIR -20 242 77 957 54 78 0 chr12 42883808 42883937 -100902518 + MER85 DNA T2_type 1 139 0 630 236 118 47 chr12 42883937 42884004 -100902451 - MIR SINE MIR -185 77 16 401 236 166 32 chr12 42884004 42884185 -100902270 - MIR SINE MIR -58 204 10 192 306 129 12 chr12 42884248 42884333 -100902122 - L2 LINE L2 -40 3232 3138 544 201 148 6 chr12 42884344 42884489 -100901966 + MER5A DNA MER1_type 6 174 -15 280 276 0 0 chr12 42885619 42885677 -100900778 + MIR SINE MIR 83 140 -68 2170 87 3 71 chr12 42886906 42887229 -100899226 - AluSx SINE Alu 0 312 12 2225 97 3 0 chr12 42887805 42888093 -100898362 - AluSp SINE Alu -24 289 1 274 167 0 0 chr12 42888579 42888621 -100897834 + 5S rRNA rRNA 1 42 -79 220 302 0 16 chr12 42889622 42889685 -100896770 + (TATG)n Simple_repeat Simple_repeat 3 64 0 26 0 0 0 chr12 42889796 42889822 -100896633 + AT_rich Low_complexity Low_complexity 1 26 0 1476 158 37 128 chr12 42890087 42890415 -100896040 + AluJb SINE Alu 1 298 -4 216 302 16 0 chr12 42890496 42890559 -100895896 + CT-rich Low_complexity Low_complexity 3 66 0 217 161 54 0 chr12 42890661 42890717 -100895738 + (TTAA)n Simple_repeat Simple_repeat 3 61 0 358 222 31 74 chr12 42890717 42890879 -100895576 - L1ME4a LINE L1 -18 6103 5949 326 140 0 0 chr12 42890879 42890929 -100895526 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 42891743 42891782 -100894673 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 287 234 0 39 chr12 42892011 42892088 -100894367 + MLT1J LTR MaLR 94 167 -344 641 209 120 39 chr12 42892488 42892747 -100893708 - L1MC5 LINE L1 -33 7928 7649 1949 162 9 19 chr12 42892898 42893260 -100893195 + L1MA9 LINE L1 5328 5687 -625 622 168 10 10 chr12 42893260 42893361 -100893094 + AluJb SINE Alu 197 297 -15 38149 90 7 9 chr12 42893638 42896472 -100889983 + L1PA6 LINE L1 13 2852 -3302 2373 98 0 0 chr12 42896472 42896777 -100889678 + AluY SINE Alu 1 305 -6 38149 90 7 9 chr12 42896777 42900083 -100886372 + L1PA6 LINE L1 2852 6139 -15 41 58 0 0 chr12 42900094 42900163 -100886292 + AT_rich Low_complexity Low_complexity 1 69 0 240 228 19 99 chr12 42900175 42900337 -100886118 - L1ME4a LINE L1 -18 6103 5955 1818 190 24 46 chr12 42900347 42900762 -100885693 + L1MA9 LINE L1 5691 6096 -216 275 146 0 0 chr12 42900762 42900803 -100885652 - MER46B DNA MER2_type 0 236 196 4456 98 4 0 chr12 42900803 42901355 -100885100 - MER41A LTR ERV1 0 554 1 5949 94 34 6 chr12 42901355 42902924 -100883531 - MER41A-int LTR ERV1 -2 5944 4250 5197 103 49 30 chr12 42902943 42903480 -100882975 - MER41A-int LTR ERV1 -2354 3969 3444 2353 88 3 13 chr12 42903480 42903785 -100882670 + AluY SINE Alu 1 302 -9 5197 103 49 30 chr12 42903785 42904197 -100882258 - MER41A-int LTR ERV1 -2879 3444 355 5040 132 78 16 chr12 42904188 42904212 -100882243 - MER41A-int LTR ERV1 -4839 1107 1086 * 216 0 0 0 chr12 42904212 42904236 -100882219 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 225 0 0 0 chr12 42904235 42904260 -100882195 + (GA)n Simple_repeat Simple_repeat 2 26 0 5040 132 78 16 chr12 42904236 42905195 -100881260 - MER41A-int LTR ERV1 -4860 1086 1 258 169 325 0 chr12 42905288 42905365 -100881090 - MER41A-int LTR ERV1 -5844 102 1 3825 103 80 4 chr12 42905431 42905946 -100880509 - MER41A LTR ERV1 0 554 1 1813 139 12 70 chr12 42905946 42906252 -100880203 - MER46B DNA MER2_type -2532 199 39 2083 150 0 0 chr12 42906252 42906552 -100879903 - AluSx SINE Alu -12 300 1 1813 139 12 70 chr12 42906552 42906589 -100879866 - MER46B DNA MER2_type -2692 39 1 934 197 22 11 chr12 42906589 42906772 -100879683 + L1MA9 LINE L1 6095 6279 -33 267 221 0 39 chr12 42907097 42907174 -100879281 + L1ME2 LINE L1 6091 6164 0 700 267 42 11 chr12 42907522 42907713 -100878742 + MIR SINE MIR 31 227 -35 300 214 51 68 chr12 42908036 42908153 -100878302 + MIR3 SINE MIR 87 201 -7 198 326 154 36 chr12 42908111 42908448 -100878007 + L2 LINE L2 2231 2607 -707 * 1119 183 22 49 chr12 42909414 42909638 -100876817 + MER20 DNA MER1_type 2 219 0 401 193 26 61 chr12 42910456 42910570 -100875885 + MIR3 SINE MIR 94 203 -5 455 265 11 70 chr12 42910651 42910836 -100875619 - MER5B DNA MER1_type 0 178 5 614 302 142 0 chr12 42910877 42911145 -100875310 - MER102b DNA MER1_type -32 309 4 509 353 6 0 chr12 42911582 42911738 -100874717 + MER5B DNA MER1_type 21 177 -1 413 195 70 70 chr12 42911847 42911975 -100874480 - MIR SINE MIR -70 192 65 25 31 0 0 chr12 42912128 42912160 -100874295 + AT_rich Low_complexity Low_complexity 1 32 0 1133 184 9 19 chr12 42912217 42912429 -100874026 - L1PB3 LINE L1 0 6154 5945 193 319 42 0 chr12 42912591 42912663 -100873792 - MIR3 SINE MIR -2 206 132 370 317 54 85 chr12 42912687 42912911 -100873544 - MIR SINE MIR -34 228 12 227 233 0 0 chr12 42913761 42913804 -100872651 - L2 LINE L2 -8 3305 3263 412 276 126 20 chr12 42914057 42914303 -100872152 + L2 LINE L2 2942 3213 -100 306 307 128 67 chr12 42916856 42917231 -100869224 - L1M2 LINE L1 -5450 1399 1002 401 248 145 47 chr12 42918526 42918740 -100867715 - MIR SINE MIR -6 256 22 291 332 144 16 chr12 42918913 42919100 -100867355 - MIR SINE MIR -13 249 39 1417 194 17 24 chr12 42920469 42920758 -100865697 - AluJo SINE Alu -25 287 1 305 260 114 65 chr12 42921014 42921037 -100865418 + MIR SINE MIR 134 154 -108 2352 127 83 39 chr12 42921037 42921446 -100865009 + MSTA LTR MaLR 2 428 0 305 260 114 65 chr12 42921446 42921545 -100864910 + MIR SINE MIR 154 262 0 2277 104 0 3 chr12 42921807 42922105 -100864350 + AluSp SINE Alu 1 297 -16 1013 260 12 8 chr12 42922195 42922445 -100864010 + MIR SINE MIR 12 262 0 2563 179 29 6 chr12 42923206 42923682 -100862773 + L1MB4 LINE L1 5689 6175 -5 810 169 15 0 chr12 42923831 42923961 -100862494 + AluSq/x SINE Alu 2 133 -180 5850 160 14 3 chr12 42923965 42924985 -100861470 - L1PA5 LINE L1 -5 6149 5105 231 36 0 0 chr12 42924985 42925013 -100861442 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5850 160 14 3 chr12 42925013 42925558 -100860897 - L1PA5 LINE L1 -1049 5105 4567 * 16875 138 18 11 chr12 42925551 42928220 -100858235 - L1M1 LINE L1 -4144 3421 736 2285 107 0 0 chr12 42928679 42928979 -100857476 - AluSx SINE Alu -12 300 1 4033 174 31 4 chr12 42929177 42929884 -100856571 + L1MB4 LINE L1 5450 6175 -5 810 169 15 0 chr12 42930033 42930163 -100856292 + AluSq/x SINE Alu 2 133 -180 19044 50 3 0 chr12 42930167 42933191 -100853264 - L1PA5 LINE L1 -7 6147 3115 223 301 108 0 chr12 42933225 42933318 -100853137 - MIR SINE MIR -157 105 3 558 275 68 108 chr12 42933569 42934215 -100852240 - L2 LINE L2 -8 3264 2637 2162 85 0 11 chr12 42934521 42934830 -100851625 - AluSg1 SINE Alu 0 306 1 271 206 27 14 chr12 42935170 42935243 -100851212 - MER116 DNA Mariner 0 80 7 303 186 34 0 chr12 42935654 42935713 -100850742 - L1ME LINE L1 -336 5834 5774 210 189 0 19 chr12 42935769 42935822 -100850633 + T-rich Low_complexity Low_complexity 2 53 0 2232 78 55 0 chr12 42935824 42936064 -100850391 - L1PB1 LINE L1 -119 6032 5770 198 0 0 0 chr12 42936064 42936086 -100850369 + (TG)n Simple_repeat Simple_repeat 2 23 0 2232 78 55 0 chr12 42936086 42936152 -100850303 - L1PB1 LINE L1 -381 5770 5709 278 223 139 127 chr12 42936158 42936324 -100850131 + MIR SINE MIR 13 180 -82 332 255 31 23 chr12 42936379 42936499 -100849956 - MIR SINE MIR -69 139 20 21 0 0 0 chr12 42936661 42936682 -100849773 + AT_rich Low_complexity Low_complexity 1 21 0 1746 186 0 13 chr12 42937156 42937467 -100848988 + AluJb SINE Alu 1 307 -5 565 268 55 75 chr12 42938916 42939300 -100847155 - MER68 LTR ERV1 -31 531 156 225 257 80 91 chr12 42939308 42939483 -100846972 - MER77 LTR ERV1 -432 173 1 259 248 27 128 chr12 42939790 42939859 -100846596 - L2 LINE L2 -5 3308 3260 2388 95 0 0 chr12 42939859 42940165 -100846290 - AluY SINE Alu -5 306 1 259 248 27 128 chr12 42940165 42940244 -100846211 - L2 LINE L2 -53 3260 3175 434 152 51 13 chr12 42940404 42940483 -100845972 + MER81 DNA DNA 1 82 -32 209 200 0 0 chr12 42941060 42941100 -100845355 + CT-rich Low_complexity Low_complexity 1 40 0 1735 114 114 7 chr12 42941103 42941376 -100845079 - AluJb SINE Alu -10 302 1 620 228 15 37 chr12 42941435 42941571 -100844884 - FLAM_A SINE Alu 0 133 1 322 227 35 92 chr12 42942123 42942264 -100844191 + MER5A DNA MER1_type 35 167 -22 192 204 114 0 chr12 42942410 42942454 -100844001 - L2 LINE L2 -3 3269 3221 216 0 0 0 chr12 42942503 42942527 -100843928 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 220 213 0 0 chr12 42942712 42942759 -100843696 + (CATTA)n Simple_repeat Simple_repeat 3 49 0 242 320 0 13 chr12 42946456 42946534 -100839921 + L2 LINE L2 3234 3310 -3 25 31 0 0 chr12 42947169 42947201 -100839254 + AT_rich Low_complexity Low_complexity 1 32 0 201 39 0 0 chr12 42948206 42948232 -100838223 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 22 35 0 0 chr12 42949132 42949161 -100837294 + AT_rich Low_complexity Low_complexity 1 29 0 1079 133 92 20 chr12 42950823 42951018 -100835437 - Tigger4(Zombi) DNA MER2_type 0 2731 2523 505 130 87 11 chr12 42950999 42951091 -100835364 - Tigger4(Zombi) DNA MER2_type -2589 142 44 * 192 262 111 78 chr12 42952281 42952434 -100834021 + MIR SINE MIR 36 192 -66 1246 194 109 42 chr12 42952493 42952776 -100833679 + AluJo SINE Alu 1 302 0 22 56 0 0 chr12 42954741 42954777 -100831678 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 42955416 42955439 -100831016 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 42955859 42955880 -100830575 + AT_rich Low_complexity Low_complexity 1 21 0 205 181 48 36 chr12 42956123 42956206 -100830249 + (CCCCG)n Simple_repeat Simple_repeat 5 88 0 308 242 100 84 chr12 42958281 42958471 -100827984 - MER112 DNA MER1_type -2 258 66 269 174 0 138 chr12 42958507 42958555 -100827900 - MER112 DNA MER1_type -166 94 68 2102 137 62 12 chr12 42958555 42958876 -100827579 + MER1B DNA MER1_type 1 337 0 269 174 0 138 chr12 42958876 42958936 -100827519 - MER112 DNA MER1_type -192 68 1 1637 210 125 51 chr12 42959353 42959516 -100826939 + MLT1F1 LTR MaLR 1 150 -417 2317 97 7 0 chr12 42959516 42959816 -100826639 + AluSp SINE Alu 1 302 -11 1637 210 125 51 chr12 42959816 42960183 -100826272 + MLT1F1 LTR MaLR 150 567 0 650 231 28 44 chr12 42960586 42960768 -100825687 + L2 LINE L2 3117 3295 -18 665 299 57 31 chr12 42960825 42961176 -100825279 + L2 LINE L2 2316 2675 -639 629 155 21 0 chr12 42961212 42961309 -100825146 + Tigger7 DNA MER2_type 2489 2587 0 621 281 139 37 chr12 42961310 42961605 -100824850 + L2 LINE L2 2979 3303 -10 191 217 0 22 chr12 42961629 42961675 -100824780 + L2 LINE L2 3262 3306 -7 212 232 0 14 chr12 42961717 42961786 -100824669 + T-rich Low_complexity Low_complexity 5 72 0 919 157 60 0 chr12 42961788 42961954 -100824501 - AluSg/x SINE Alu 0 310 135 2347 85 3 7 chr12 42962214 42962520 -100823935 - AluY SINE Alu -6 305 1 2842 116 25 22 chr12 42962580 42963028 -100823427 - L1MA8 LINE L1 -5 6286 5838 2821 185 48 6 chr12 42963262 42963780 -100822675 - MLT1F LTR MaLR -2 540 1 389 36 0 18 chr12 42963811 42963867 -100822588 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1469 170 82 4 chr12 42963870 42964140 -100822315 - AluJb SINE Alu -21 291 1 563 315 119 19 chr12 42964155 42964517 -100821938 - MLT1L LTR MaLR -25 590 193 2330 97 0 10 chr12 42964647 42964957 -100821498 + AluSq SINE Alu 1 307 -6 207 333 0 13 chr12 42966582 42966657 -100819798 + G-rich Low_complexity Low_complexity 1 74 0 234 132 29 29 chr12 42966833 42966901 -100819554 + GA-rich Low_complexity Low_complexity 1 68 0 2435 93 0 3 chr12 42967566 42967879 -100818576 - AluSx SINE Alu 0 312 1 280 279 49 109 chr12 42968099 42968282 -100818173 + L2 LINE L2 2332 2503 -811 198 175 25 0 chr12 42968471 42968511 -100817944 - L2 LINE L2 -211 3061 3021 1049 254 96 17 chr12 42968774 42969192 -100817263 - Charlie7 DNA MER1_type -66 2546 2096 1019 265 83 8 chr12 42969217 42969590 -100816865 - Charlie7 DNA MER1_type -1952 660 260 401 257 195 0 chr12 42969891 42970004 -100816451 + L2 LINE L2 3138 3272 0 2440 91 0 0 chr12 42970470 42970777 -100815678 + AluSc SINE Alu 1 307 -2 183 129 0 0 chr12 42971060 42971091 -100815364 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 246 206 48 0 chr12 42971238 42971301 -100815154 + GA-rich Low_complexity Low_complexity 4 69 0 508 247 293 10 chr12 42971441 42971833 -100814622 - L1ME4a LINE L1 -16 6105 5603 8126 168 17 181 chr12 42971850 42972272 -100814183 + L1MA4 LINE L1 1 490 -6359 1955 166 7 0 chr12 42972272 42972579 -100813876 + AluJb SINE Alu 1 309 -3 8126 168 17 181 chr12 42972579 42973654 -100812801 + L1MA4 LINE L1 490 782 -6067 204 97 0 0 chr12 42973654 42973685 -100812770 + (CA)n Simple_repeat Simple_repeat 2 32 0 8126 168 17 181 chr12 42973685 42975130 -100811325 + L1MA4 LINE L1 782 2462 -4387 38483 88 9 7 chr12 42975137 42981272 -100805183 + L1PA6 LINE L1 11 6154 0 6558 197 57 9 chr12 42981279 42982163 -100804292 + L1MA4 LINE L1 2449 3288 -3560 2433 89 13 3 chr12 42982163 42982478 -100803977 + L1PA11 LINE L1 5846 6163 -11 6558 197 57 9 chr12 42982478 42983599 -100802856 + L1MA4 LINE L1 3288 4555 -2293 2290 124 29 20 chr12 42983657 42984005 -100802450 - THE1B LTR MaLR -11 353 3 10954 98 8 16 chr12 42984007 42985511 -100800944 - THE1B-int LTR MaLR 0 1580 89 810 71 71 0 chr12 42985535 42985647 -100800808 - THE1B LTR MaLR -244 120 1 1004 244 0 0 chr12 42985659 42985872 -100800583 - AluJb SINE Alu -13 299 87 5443 152 67 1 chr12 42985873 42986370 -100800085 + L1MA4 LINE L1 5551 6014 -988 2186 101 0 0 chr12 42986370 42986647 -100799808 + AluSc SINE Alu 12 288 -21 5443 152 67 1 chr12 42986647 42987514 -100798941 + L1MA4 LINE L1 6014 6996 -6 848 277 48 0 chr12 42987526 42987757 -100798698 + MIR SINE MIR 20 261 -1 351 0 0 0 chr12 42987861 42987900 -100798555 + (CA)n Simple_repeat Simple_repeat 2 40 0 1963 139 14 0 chr12 42988668 42988963 -100797492 + AluSx SINE Alu 5 303 -9 434 267 46 38 chr12 42989952 42990083 -100796372 + MER5A DNA MER1_type 30 161 -28 206 269 0 19 chr12 42990097 42990149 -100796306 + MER5A DNA MER1_type 133 183 -6 227 256 105 0 chr12 42990724 42990810 -100795645 + MIR SINE MIR 120 214 -48 622 267 125 17 chr12 42990919 42991151 -100795304 - MIR SINE MIR 0 262 6 338 203 89 101 chr12 42991789 42992115 -100794340 + L1ME4a LINE L1 5799 6120 -1 2057 100 24 3 chr12 42992198 42992488 -100793967 + AluSq SINE Alu 1 296 -17 208 214 0 0 chr12 42993455 42993497 -100792958 + MIR SINE MIR 1 42 -220 1704 111 0 40 chr12 42993606 42993859 -100792596 + AluSg SINE Alu 1 243 -67 327 330 10 0 chr12 42993998 42994101 -100792354 + MIR SINE MIR 158 261 -1 306 271 161 47 chr12 42994139 42994212 -100792243 - L1ME LINE L1 -303 5818 5755 2433 46 0 3 chr12 42994212 42994521 -100791934 - AluY SINE Alu 0 308 1 306 271 161 47 chr12 42994521 42994745 -100791710 - L1ME LINE L1 -366 5755 5486 8410 167 82 10 chr12 42995683 42996958 -100789497 + L1MB3 LINE L1 14 1433 -4951 2714 113 52 0 chr12 42996958 42997365 -100789090 + MSTA LTR MaLR 1 428 0 8410 167 82 10 chr12 42997365 42997721 -100788734 + L1MB3 LINE L1 1433 1762 -4622 2989 163 56 9 chr12 42997718 42998686 -100787769 + L1MB3 LINE L1 1974 2998 -3384 * 21 0 0 0 chr12 42998686 42998707 -100787748 + AT_rich Low_complexity Low_complexity 1 21 0 41083 61 5 4 chr12 42998707 43004825 -100781630 - L1PA5 LINE L1 -11 6143 22 2075 256 24 24 chr12 43004888 43005038 -100781417 + L1MB3 LINE L1 2958 3107 -3275 2106 112 0 30 chr12 43005038 43005334 -100781121 - AluSg1 SINE Alu -22 287 1 2075 256 24 24 chr12 43005334 43005926 -100780529 + L1MB3 LINE L1 3106 3700 -2682 2034 139 40 4 chr12 43005942 43006289 -100780166 - MER46B DNA MER2_type -8 228 -3 6865 202 26 37 chr12 43006292 43006446 -100780009 + L1MB3 LINE L1 3717 3871 -2511 1870 184 0 0 chr12 43006446 43006756 -100779699 - AluJo SINE Alu -2 310 1 6865 202 26 37 chr12 43006756 43008319 -100778136 + L1MB3 LINE L1 3871 5415 -967 476 157 108 0 chr12 43008326 43008428 -100778027 + L1MB3 LINE L1 6069 6181 -2 4417 176 67 5 chr12 43008444 43009384 -100777071 + L1MB3 LINE L1 5421 6412 -7 420 221 112 92 chr12 43009631 43009880 -100776575 + MIR SINE MIR 5 258 -4 427 122 57 8 chr12 43010346 43010469 -100775986 + (TA)n Simple_repeat Simple_repeat 2 130 0 690 157 34 22 chr12 43010786 43010944 -100775511 + L1M2 LINE L1 5656 5816 -382 561 88 0 11 chr12 43010972 43011063 -100775392 + L1MB7 LINE L1 6086 6175 -9 23 33 0 0 chr12 43011177 43011207 -100775248 + AT_rich Low_complexity Low_complexity 1 30 0 975 92 0 0 chr12 43011235 43011366 -100775089 + AluY SINE Alu 178 308 -3 5494 122 39 23 chr12 43062686 43063357 -100723098 + L1PB2 LINE L1 5100 5759 -392 774 84 0 0 chr12 43063357 43063464 -100722991 + (TA)n Simple_repeat Simple_repeat 2 108 0 5494 122 39 23 chr12 43063464 43063502 -100722953 + L1PB2 LINE L1 5759 5795 -356 2446 82 0 0 chr12 43063502 43063806 -100722649 + AluY SINE Alu 1 304 -7 5494 122 39 23 chr12 43063806 43064135 -100722320 + L1PB2 LINE L1 5795 6150 -1 2876 233 26 24 chr12 43064149 43064979 -100721476 + L1MB8 LINE L1 2386 3217 -4348 205 159 101 0 chr12 43065009 43065078 -100721377 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 3080 192 19 35 chr12 43065081 43065756 -100720699 + L1MB8 LINE L1 3213 3867 -3698 2030 147 3 0 chr12 43065756 43066056 -100720399 + AluSq SINE Alu 1 301 -12 3080 192 19 35 chr12 43066056 43066425 -100720030 + L1MB8 LINE L1 3867 4240 -3325 2147 146 0 0 chr12 43066425 43066733 -100719722 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr12 43066734 43066769 -100719686 + AT_rich Low_complexity Low_complexity 1 35 0 810 137 8 23 chr12 43066926 43067057 -100719398 - FLAM_C SINE Alu -12 131 3 278 290 0 0 chr12 43067309 43067378 -100719077 + MIR SINE MIR 71 139 -69 2113 130 0 7 chr12 43067774 43068075 -100718380 + AluSx SINE Alu 1 299 -13 1728 127 60 88 chr12 43068157 43068371 -100718084 - THE1C LTR MaLR 0 375 175 2439 63 7 3 chr12 43068371 43068674 -100717781 + AluY SINE Alu 1 304 -7 1728 127 60 88 chr12 43068674 43068845 -100717610 - THE1C LTR MaLR -200 175 1 1545 172 40 26 chr12 43069574 43069877 -100716578 - AluJo SINE Alu -5 307 1 6606 182 28 52 chr12 43070123 43070402 -100716053 + L1MB8 LINE L1 5166 5450 -2147 244 214 0 0 chr12 43070402 43070444 -100716011 - Alu SINE Alu -242 60 19 1626 165 0 63 chr12 43070444 43070760 -100715695 + AluJb SINE Alu 5 300 -12 6606 182 28 52 chr12 43070760 43072808 -100713647 + L1MB8 LINE L1 5449 7464 -133 1760 171 3 0 chr12 43072808 43073126 -100713329 + AluJb SINE Alu 1 319 0 6606 182 28 52 chr12 43073126 43073252 -100713203 + L1MB8 LINE L1 7464 7592 -5 1374 196 62 98 chr12 43073445 43073893 -100712562 - MSTB1 LTR MaLR 0 432 1 308 152 61 61 chr12 43073900 43073966 -100712489 + L1ME LINE L1 5494 5559 -562 480 177 74 26 chr12 43074094 43074293 -100712162 - MER20B DNA MER1_type 0 783 543 1183 204 100 0 chr12 43074381 43074488 -100711967 + AluJo SINE Alu 5 100 -212 190 0 67 0 chr12 43074488 43074518 -100711937 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1183 204 100 0 chr12 43074518 43074689 -100711766 + AluJo SINE Alu 100 311 -1 323 234 43 43 chr12 43074884 43074978 -100711477 + HERV16 LTR ERVL 3222 3315 -2339 208 243 0 54 chr12 43075482 43075556 -100710899 + GA-rich Low_complexity Low_complexity 4 73 0 1495 288 32 12 chr12 43075777 43076417 -100710038 + HERV16 LTR ERVL 3765 4417 -1068 410 278 82 75 chr12 43076755 43077113 -100709342 + HERV16 LTR ERVL 4505 4774 -222 2021 184 49 0 chr12 43077113 43077461 -100708994 - MLT1A1 LTR MaLR 0 365 1 410 278 82 75 chr12 43077461 43077588 -100708867 + HERV16 LTR ERVL 4774 4899 -97 267 237 50 79 chr12 43077681 43077820 -100708635 + LTR16A LTR ERVL 10 144 -306 823 254 38 0 chr12 43077867 43078052 -100708403 + LTR16A LTR ERVL 259 450 0 302 331 105 0 chr12 43078116 43078249 -100708206 - MLT1L LTR MaLR -48 567 421 238 313 12 25 chr12 43078449 43078529 -100707926 - MLT1L LTR MaLR -415 200 122 8919 81 15 109 chr12 43078546 43080074 -100706381 - SVA Other Other -2 1384 1 192 77 0 0 chr12 43080074 43080100 -100706355 + (AGGGGG)n Simple_repeat Simple_repeat 3 28 0 2295 153 21 18 chr12 43080188 43080575 -100705880 - MLT1B LTR MaLR -2 388 1 220 267 336 0 chr12 43080590 43080706 -100705749 + L2 LINE L2 3137 3291 -22 2087 103 0 21 chr12 43080747 43081069 -100705386 + AluSx SINE Alu 1 316 0 390 302 57 38 chr12 43081262 43081527 -100704928 + L1ME4a LINE L1 5313 5582 -2226 584 323 224 18 chr12 43081528 43081980 -100704475 - MLT1K LTR MaLR 0 588 44 373 274 45 96 chr12 43082015 43082225 -100704230 + L1ME4a LINE L1 5579 5798 -323 1506 168 71 39 chr12 43082225 43082505 -100703950 + AluJo SINE Alu 1 289 -13 373 274 45 96 chr12 43082505 43082742 -100703713 + L1ME4a LINE L1 5798 6026 -95 979 23 78 39 chr12 43083291 43083395 -100703060 - MER85 DNA T2_type -6 133 22 2432 51 7 0 chr12 43083395 43083689 -100702766 + AluY SINE Alu 1 296 -15 979 23 78 39 chr12 43083689 43083712 -100702743 - MER85 DNA T2_type -117 22 1 2204 210 60 6 chr12 43084481 43084947 -100701508 - MLT2B2 LTR ERVL -24 491 1 234 257 5 32 chr12 43084949 43085066 -100701389 + T-rich Low_complexity Low_complexity 1 182 0 909 168 7 0 chr12 43085289 43085432 -100701023 - AluJb SINE Alu -32 280 137 832 157 169 28 chr12 43085538 43085716 -100700739 - AluJb SINE Alu -22 290 88 2355 98 3 22 chr12 43085872 43086190 -100700265 - AluSx SINE Alu 0 312 1 21 36 0 0 chr12 43086570 43086598 -100699857 + AT_rich Low_complexity Low_complexity 1 28 0 41 36 0 0 chr12 43086983 43087038 -100699417 + AT_rich Low_complexity Low_complexity 1 55 0 1885 132 10 7 chr12 43088104 43088400 -100698055 - AluSx SINE Alu -15 297 1 260 230 0 40 chr12 43089032 43089106 -100697349 + G-rich Low_complexity Low_complexity 4 74 0 671 209 139 19 chr12 43091804 43092019 -100694436 + L2 LINE L2 2619 2859 -455 331 295 105 24 chr12 43092044 43092254 -100694201 + L2 LINE L2 3043 3269 -44 280 197 13 26 chr12 43092425 43092501 -100693954 - AluJ/FRAM SINE Alu -1 301 227 709 124 10 0 chr12 43092508 43092605 -100693850 - AluJ/FLAM SINE Alu -213 99 2 266 269 128 40 chr12 43092674 43092711 -100693744 + L3 LINE CR1 1190 1222 -355 2353 114 29 14 chr12 43092711 43093061 -100693394 - THE1A LTR MaLR 0 355 1 266 269 128 40 chr12 43093061 43093172 -100693283 + L3 LINE CR1 1222 1351 -226 * 822 318 164 27 chr12 43093156 43093858 -100692597 - L2 LINE L2 -633 2681 1884 461 320 35 25 chr12 43093965 43094162 -100692293 - MIR SINE MIR -4 258 60 397 243 101 7 chr12 43094390 43094538 -100691917 + L1MC4 LINE L1 6459 6620 -1422 1067 189 66 4 chr12 43094555 43094690 -100691765 + L1MC4 LINE L1 6768 6924 -1118 2131 130 0 0 chr12 43094690 43094989 -100691466 + AluSx SINE Alu 1 299 -13 1067 189 66 4 chr12 43094989 43095080 -100691375 + L1MC4 LINE L1 6924 7008 -1034 1125 207 42 137 chr12 43095082 43095512 -100690943 + L1MC4 LINE L1 7241 7629 -413 387 0 0 0 chr12 43095899 43095942 -100690513 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 323 62 21 chr12 43095952 43096048 -100690407 + MIR SINE MIR 35 134 -128 2059 141 7 0 chr12 43096962 43097260 -100689195 - AluSx SINE Alu -12 300 1 471 216 99 63 chr12 43097627 43097849 -100688606 - L1M4 LINE L1 -3780 2366 2137 879 192 17 6 chr12 43097891 43098063 -100688392 - AluJo SINE Alu -30 282 109 290 262 24 119 chr12 43099089 43099303 -100687152 + MIR SINE MIR 4 241 -21 254 282 179 62 chr12 43099506 43099701 -100686754 + MIR SINE MIR 41 258 -4 23 0 0 0 chr12 43099781 43099804 -100686651 + AT_rich Low_complexity Low_complexity 1 23 0 722 243 28 11 chr12 43100324 43100473 -100685982 + MLT1A1 LTR MaLR 184 338 -27 208 28 83 0 chr12 43100473 43100509 -100685946 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 722 243 28 11 chr12 43100509 43100536 -100685919 + MLT1A1 LTR MaLR 338 363 -2 2332 80 0 13 chr12 43101769 43102069 -100684386 + AluY SINE Alu 1 296 -15 2191 109 3 0 chr12 43102077 43102380 -100684075 + AluSq SINE Alu 2 305 -8 927 172 181 18 chr12 43102415 43102636 -100683819 + AluJo SINE Alu 1 257 -55 1046 250 103 23 chr12 43103164 43103512 -100682943 - L1ME1 LINE L1 -21 6539 6164 916 226 42 4 chr12 43103543 43103782 -100682673 - L1ME1 LINE L1 -2453 4087 3840 675 206 102 19 chr12 43103778 43104077 -100682378 - L1 LINE L1 -2887 3259 2935 * 232 133 122 44 chr12 43104061 43104151 -100682304 - L1ME1 LINE L1 -4044 2496 2400 * 1456 128 76 0 chr12 43104186 43104435 -100682020 - Tigger7 DNA MER2_type -1 2486 2219 437 234 71 7 chr12 43104472 43104613 -100681842 - L1ME1 LINE L1 -4179 2361 2212 2060 174 65 3 chr12 43104632 43105017 -100681438 + Tigger1 DNA MER2_type 2 410 -2008 * 10455 125 45 13 chr12 43105015 43106730 -100679725 + Tigger1 DNA MER2_type 649 2418 0 2324 221 82 80 chr12 43106737 43107706 -100678749 - L1ME1 LINE L1 -4360 2180 1207 1059 94 0 0 chr12 43107706 43107886 -100678569 + (TA)n Simple_repeat Simple_repeat 1 180 0 2324 221 82 80 chr12 43107886 43108086 -100678369 - L1ME1 LINE L1 -5333 1207 1009 1492 183 9 31 chr12 43108118 43108435 -100678020 - AluJo SINE Alu -2 310 1 404 335 43 60 chr12 43109118 43109419 -100677036 - L1ME1 LINE L1 -6236 304 9 22 0 0 0 chr12 43109483 43109505 -100676950 + AT_rich Low_complexity Low_complexity 1 22 0 1645 171 11 28 chr12 43110403 43110541 -100675914 + AluJo SINE Alu 1 140 -172 2368 62 3 0 chr12 43110541 43110832 -100675623 + AluSg1 SINE Alu 1 292 -17 1645 171 11 28 chr12 43110832 43110980 -100675475 + AluJo SINE Alu 140 282 -30 208 344 0 16 chr12 43111193 43111257 -100675198 - MIR SINE MIR -190 72 10 21 0 0 0 chr12 43111597 43111618 -100674837 + AT_rich Low_complexity Low_complexity 1 21 0 355 198 73 10 chr12 43111624 43111720 -100674735 - MER3 DNA MER1_type -22 187 86 1899 104 54 14 chr12 43111778 43112075 -100674380 - AluSx SINE Alu -2 310 2 22 0 0 0 chr12 43112188 43112210 -100674245 + AT_rich Low_complexity Low_complexity 1 22 0 2057 118 0 3 chr12 43113078 43113374 -100673081 - AluSx SINE Alu -17 295 1 728 165 25 8 chr12 43113504 43113625 -100672830 - FLAM_A SINE Alu -7 126 4 28 0 0 0 chr12 43113628 43113656 -100672799 + AT_rich Low_complexity Low_complexity 1 28 0 949 294 72 42 chr12 43113935 43114336 -100672119 + L2 LINE L2 2830 3242 -71 260 281 49 37 chr12 43114392 43114474 -100671981 - L3 LINE CR1 -85 1492 1410 640 274 137 64 chr12 43114475 43114899 -100671556 - L3 LINE CR1 -319 1258 804 840 141 0 0 chr12 43115121 43115249 -100671206 + FLAM_C SINE Alu 1 128 -5 203 246 15 0 chr12 43115751 43115816 -100670639 + (CA)n Simple_repeat Simple_repeat 2 67 0 2402 61 0 0 chr12 43116056 43116349 -100670106 - AluY SINE Alu -18 293 1 306 269 114 44 chr12 43117112 43117470 -100668985 - L1MCa LINE L1 -4257 2170 1402 282 262 165 28 chr12 43117476 43117724 -100668731 - L1MCa LINE L1 -4875 1541 1260 349 278 172 18 chr12 43117776 43117945 -100668510 - L1MCa LINE L1 -5364 1052 858 684 285 65 24 chr12 43118201 43118610 -100667845 + L1MC4a LINE L1 5528 6062 -1746 302 298 40 63 chr12 43119418 43119593 -100666862 - MIR SINE MIR -56 206 36 322 290 20 0 chr12 43120545 43120645 -100665810 - L1ME LINE L1 -484 5678 5577 728 148 16 0 chr12 43121447 43121575 -100664880 - AluSg/x SINE Alu -10 302 173 1852 152 0 39 chr12 43122530 43122840 -100663615 + AluJb SINE Alu 1 298 -14 1729 132 46 11 chr12 43125285 43125566 -100660889 + AluJb SINE Alu 1 291 -21 1527 173 6 55 chr12 43125853 43126165 -100660290 + AluJo SINE Alu 4 300 -12 1584 180 43 17 chr12 43126211 43126511 -100659944 + AluJb SINE Alu 1 308 -4 402 194 65 40 chr12 43126880 43127004 -100659451 - MIR SINE MIR -71 191 65 840 212 0 0 chr12 43127191 43127337 -100659118 - FRAM SINE Alu -30 146 1 363 309 6 6 chr12 43128170 43128353 -100658102 + L1ME LINE L1 5249 5431 -731 329 178 206 0 chr12 43128797 43128870 -100657585 + L2 LINE L2 3184 3271 -1 24 67 0 0 chr12 43128914 43128959 -100657496 + AT_rich Low_complexity Low_complexity 1 45 0 365 324 124 37 chr12 43130636 43130670 -100655785 + L2 LINE L2 2009 2039 -1275 303 49 0 0 chr12 43130670 43130711 -100655744 + (TATG)n Simple_repeat Simple_repeat 1 41 0 365 324 124 37 chr12 43130711 43131111 -100655344 + L2 LINE L2 2039 2481 -833 1181 189 58 26 chr12 43131202 43131515 -100654940 - MER33 DNA MER1_type -1 323 1 212 379 97 0 chr12 43131807 43131931 -100654524 + L2 LINE L2 2943 3078 -194 650 157 0 101 chr12 43132502 43132661 -100653794 + FLAM_C SINE Alu 1 143 0 379 242 86 14 chr12 43132665 43132758 -100653697 - MER5C DNA MER1_type -26 298 213 1828 179 0 0 chr12 43132758 43133049 -100653406 + AluJo SINE Alu 1 291 -21 379 242 86 14 chr12 43133049 43133154 -100653301 - MER5C DNA MER1_type -111 213 1 826 127 8 0 chr12 43134745 43134871 -100651584 + FLAM_C SINE Alu 2 128 -5 1617 169 30 10 chr12 43134902 43135198 -100651257 + AluJb SINE Alu 1 302 -10 1478 136 57 8 chr12 43137089 43137353 -100649102 - Tigger7 DNA MER2_type -2 2485 2209 958 194 0 0 chr12 43137362 43137517 -100648938 - Tigger7 DNA MER2_type -549 156 2 1041 267 143 51 chr12 43137766 43138473 -100647982 - L2 LINE L2 0 3313 2534 2492 125 76 15 chr12 43138476 43138945 -100647510 - Tigger2 DNA MER2_type -3 2715 1 698 235 32 16 chr12 43138950 43139137 -100647318 - L2 LINE L2 -779 2535 2346 1463 129 98 43 chr12 43139137 43139463 -100646992 + L1MA9 LINE L1 5963 6306 -6 1268 156 5 9 chr12 43139723 43139935 -100646520 + AluJb SINE Alu 93 303 -9 255 345 23 2 chr12 43140167 43140265 -100646190 - MIR SINE MIR -95 113 16 2133 101 3 52 chr12 43140995 43141321 -100645134 - AluSq SINE Alu -3 310 1 197 343 128 0 chr12 43141540 43141642 -100644813 + MIR SINE MIR 32 146 -62 1872 273 173 63 chr12 43142114 43142213 -100644242 + HAL1 LINE L1 4 91 -2416 2109 103 4 0 chr12 43142213 43142527 -100643928 - AluSq SINE Alu 0 315 1 1872 273 173 63 chr12 43142527 43144278 -100642177 + HAL1 LINE L1 91 2059 -448 2288 112 0 0 chr12 43144293 43144596 -100641859 + AluSx SINE Alu 1 303 -9 544 199 116 39 chr12 43144606 43144787 -100641668 + HAL1 LINE L1 2313 2507 0 483 219 55 52 chr12 43148534 43148764 -100637691 + L1ME2 LINE L1 5924 6157 -9 23 0 0 0 chr12 43149252 43149275 -100637180 + AT_rich Low_complexity Low_complexity 1 23 0 1367 155 78 14 chr12 43149451 43149747 -100636708 + L1MA7 LINE L1 5782 6096 -195 2191 149 46 14 chr12 43149747 43150184 -100636271 + Tigger2 DNA MER2_type 1 451 -2267 667 147 0 0 chr12 43150184 43150293 -100636162 + AluJb SINE Alu 204 312 0 1562 155 41 4 chr12 43150318 43150589 -100635866 + Tigger2 DNA MER2_type 477 757 -1961 917 151 164 9 chr12 43150645 43150864 -100635591 + Tigger2 DNA MER2_type 2464 2716 -2 810 169 38 16 chr12 43150864 43151048 -100635407 + L1MA8 LINE L1 6101 6288 -3 21 0 0 0 chr12 43151183 43151204 -100635251 + AT_rich Low_complexity Low_complexity 1 21 0 2042 123 0 39 chr12 43151277 43151586 -100634869 + AluJb SINE Alu 1 297 -15 30 27 0 0 chr12 43151837 43151874 -100634581 + AT_rich Low_complexity Low_complexity 1 37 0 2161 86 21 7 chr12 43155174 43155464 -100630991 - AluSq SINE Alu -19 294 1 2171 99 27 0 chr12 43156594 43156886 -100629569 + AluSg SINE Alu 1 300 -10 1070 138 6 0 chr12 43156886 43157046 -100629409 + AluSg/x SINE Alu 132 292 -18 29 0 0 0 chr12 43157046 43157075 -100629380 + AT_rich Low_complexity Low_complexity 1 29 0 2427 73 3 0 chr12 43159453 43159754 -100626701 + AluSq SINE Alu 1 302 -11 2049 119 34 0 chr12 43162006 43162300 -100624155 - AluSx SINE Alu -8 304 1 2224 73 18 0 chr12 43162373 43162659 -100623796 - AluY SINE Alu -20 291 1 1712 181 0 3 chr12 43162937 43163224 -100623231 + AluJo SINE Alu 7 292 -20 244 250 59 0 chr12 43163390 43163458 -100622997 - L1MC/D LINE L1 -2048 5760 5689 2179 119 0 3 chr12 43163482 43163776 -100622679 - AluJb SINE Alu -7 305 13 396 298 181 12 chr12 43163925 43164096 -100622359 - MIR SINE MIR -16 246 47 1744 174 10 0 chr12 43164255 43164553 -100621902 - AluJo SINE Alu -11 301 1 2306 87 3 10 chr12 43165343 43165641 -100620814 + AluSp SINE Alu 1 296 -17 292 214 11 67 chr12 43165729 43165818 -100620637 + L1ME3A LINE L1 5520 5603 -518 507 177 122 61 chr12 43166760 43166907 -100619548 + MER5B DNA MER1_type 9 164 -14 1761 169 28 0 chr12 43166990 43167274 -100619181 - AluJb SINE Alu -20 292 1 325 296 61 0 chr12 43167749 43167864 -100618591 - MIR SINE MIR -20 242 121 21 0 0 0 chr12 43168058 43168079 -100618376 + AT_rich Low_complexity Low_complexity 1 21 0 535 234 227 29 chr12 43168446 43168724 -100617731 + L1ME3A LINE L1 5628 5960 -202 321 242 99 39 chr12 43168791 43168926 -100617529 + L1ME3A LINE L1 5963 6113 -57 828 165 0 0 chr12 43168926 43169059 -100617396 + FLAM_A SINE Alu 1 133 0 321 242 99 39 chr12 43169059 43169105 -100617350 + L1ME3A LINE L1 6113 6155 -15 839 117 8 8 chr12 43169394 43169514 -100616941 + FLAM_C SINE Alu 1 120 -23 1649 211 3 3 chr12 43170157 43170460 -100615995 - AluJb SINE Alu -9 303 1 1837 163 0 31 chr12 43170525 43170844 -100615611 + AluSx SINE Alu 1 309 -3 441 260 121 13 chr12 43171533 43171706 -100614749 + MIR SINE MIR 32 228 -34 507 216 109 69 chr12 43171712 43172041 -100614414 + L1MC4a LINE L1 5696 6034 -87 241 281 31 0 chr12 43173109 43173173 -100613282 - MIR SINE MIR -1 261 196 2090 113 0 3 chr12 43173323 43173616 -100612839 + AluSg SINE Alu 1 292 -18 943 215 70 19 chr12 43173711 43173925 -100612530 - AluJo SINE Alu -87 225 1 21 82 0 0 chr12 43174281 43174330 -100612125 + AT_rich Low_complexity Low_complexity 1 49 0 3091 234 36 27 chr12 43174498 43175335 -100611120 - L1ME1 LINE L1 -3 6163 5311 1747 184 3 13 chr12 43175335 43175645 -100610810 - AluJb SINE Alu -5 307 1 3091 234 36 27 chr12 43175645 43175770 -100610685 - L1ME1 LINE L1 -855 5311 5189 1404 228 81 39 chr12 43175853 43176307 -100610148 - L1ME1 LINE L1 -46 6120 5687 2200 108 3 3 chr12 43176307 43176602 -100609853 - AluSx SINE Alu -17 295 1 1404 228 81 39 chr12 43176602 43176638 -100609817 - L1ME1 LINE L1 -479 5687 5654 2417 81 0 3 chr12 43176638 43176948 -100609507 - AluY SINE Alu -2 309 1 1404 228 81 39 chr12 43176948 43176972 -100609483 - L1ME1 LINE L1 -512 5654 5588 1180 76 0 0 chr12 43176975 43177119 -100609336 + AluSp/q SINE Alu 156 299 -14 996 228 84 21 chr12 43177135 43177559 -100608896 - L1ME1 LINE L1 -613 5553 5103 670 214 0 0 chr12 43177682 43177813 -100608642 + FLAM_C SINE Alu 2 132 -1 5370 255 97 21 chr12 43178030 43180107 -100606348 + L1M4b LINE L1 10 2230 -4729 2410 72 3 0 chr12 43180107 43180411 -100606044 + AluY SINE Alu 1 305 -6 5370 255 97 21 chr12 43180411 43180483 -100605972 + L1M4b LINE L1 2230 2295 -4664 296 229 0 29 chr12 43180483 43180553 -100605902 - LTR28 LTR ERV1 0 1020 953 2499 179 44 8 chr12 43180641 43181120 -100605335 - LTR27 LTR ERV1 -134 502 7 1504 108 5 0 chr12 43181295 43181508 -100604947 + AluSg/x SINE Alu 86 299 -13 1543 205 0 27 chr12 43181517 43181810 -100604645 + AluJo SINE Alu 1 285 -27 4426 240 42 44 chr12 43182053 43182444 -100604011 + L1M4b LINE L1 2610 3001 -3956 671 200 8 8 chr12 43182444 43182564 -100603891 + FLAM_A SINE Alu 2 121 -12 4426 240 42 44 chr12 43182564 43183997 -100602458 + L1M4b LINE L1 3001 4419 -2538 27 0 0 0 chr12 43184267 43184294 -100602161 + AT_rich Low_complexity Low_complexity 1 27 0 202 214 24 0 chr12 43184642 43184684 -100601771 + (TG)n Simple_repeat Simple_repeat 2 44 0 1121 206 28 5 chr12 43185023 43185237 -100601218 + MER20 DNA MER1_type 1 219 0 898 171 74 6 chr12 43186241 43186417 -100600038 + MER5A DNA MER1_type 1 188 -1 828 125 0 0 chr12 43186802 43186914 -100599541 + AluJo/FLAM SINE Alu 1 112 -200 2000 132 7 29 chr12 43186916 43187226 -100599229 - AluSx SINE Alu -9 303 1 25 31 0 0 chr12 43187234 43187266 -100599189 + AT_rich Low_complexity Low_complexity 1 32 0 71 13 0 0 chr12 43187914 43187992 -100598463 + AT_rich Low_complexity Low_complexity 1 78 0 2109 99 14 3 chr12 43188058 43188352 -100598103 + AluSq SINE Alu 1 297 -16 39 0 0 0 chr12 43188794 43188833 -100597622 + AT_rich Low_complexity Low_complexity 1 39 0 400 238 54 27 chr12 43188924 43189071 -100597384 - L1ME4a LINE L1 -3 6118 5968 21 0 0 0 chr12 43189071 43189092 -100597363 + AT_rich Low_complexity Low_complexity 1 21 0 546 283 31 0 chr12 43189297 43189456 -100596999 - L1ME4a LINE L1 -435 5686 5523 30 45 0 0 chr12 43189862 43189906 -100596549 + AT_rich Low_complexity Low_complexity 1 44 0 519 322 74 25 chr12 43190000 43190242 -100596213 + MIR SINE MIR 5 258 -4 328 250 170 9 chr12 43190262 43190374 -100596081 - L2 LINE L2 0 3313 3184 2148 101 0 3 chr12 43190745 43191054 -100595401 - AluSq SINE Alu 0 308 1 941 231 3 88 chr12 43191216 43191511 -100594944 - MLT1E LTR MaLR -2 591 322 327 179 228 16 chr12 43191890 43192013 -100594442 - MER103 DNA DNA -15 151 3 2116 118 0 0 chr12 43192484 43192773 -100593682 + AluSx SINE Alu 1 289 -23 229 371 0 29 chr12 43192800 43192905 -100593550 - MIR SINE MIR -160 102 1 1891 123 0 79 chr12 43192961 43193279 -100593176 + AluSx SINE Alu 1 293 -19 1719 154 67 13 chr12 43193610 43193909 -100592546 - MER1B DNA MER1_type 0 339 25 464 130 7 20 chr12 43193901 43193993 -100592462 + MSTB2 LTR MaLR 266 445 -12 * 1385 217 20 17 chr12 43194122 43194300 -100592155 - AluJo SINE Alu -12 300 119 183 114 0 0 chr12 43194300 43194335 -100592120 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1385 217 20 17 chr12 43194335 43194455 -100592000 - AluJo SINE Alu -193 119 1 1204 133 82 10 chr12 43194617 43194812 -100591643 + AluJb SINE Alu 88 296 -16 21 0 0 0 chr12 43194937 43194958 -100591497 + AT_rich Low_complexity Low_complexity 1 21 0 233 298 36 12 chr12 43195027 43195111 -100591344 - MIR SINE MIR -108 154 69 447 309 73 24 chr12 43195302 43195467 -100590988 + MIR SINE MIR 1 173 -89 1057 139 92 101 chr12 43195705 43195943 -100590512 + MER46A DNA MER2_type 1 236 0 268 178 0 0 chr12 43196029 43196074 -100590381 + Charlie3 DNA MER1_type 1 45 -2665 * 415 156 0 0 chr12 43196065 43196129 -100590326 + Charlie3 DNA MER1_type 2643 2706 -4 22 0 0 0 chr12 43196257 43196279 -100590176 + AT_rich Low_complexity Low_complexity 1 22 0 3887 153 42 34 chr12 43196633 43197344 -100589111 + L1MA8 LINE L1 5492 6211 -80 1837 140 3 53 chr12 43197344 43197666 -100588789 - AluJb SINE Alu -4 308 3 3887 153 42 34 chr12 43197666 43197744 -100588711 + L1MA8 LINE L1 6211 6287 -4 609 169 39 0 chr12 43198106 43198236 -100588219 - L1MA8 LINE L1 0 6291 6157 337 344 142 4 chr12 43198427 43198587 -100587868 - MIR SINE MIR -79 183 6 234 324 287 0 chr12 43199214 43199322 -100587133 + MIR SINE MIR 11 149 -113 658 283 91 31 chr12 43199515 43199967 -100586488 - L1M4 LINE L1 -3319 2827 2349 694 206 14 0 chr12 43199969 43200110 -100586345 + FLAM_C SINE Alu 1 143 0 283 296 187 12 chr12 43200515 43201041 -100585414 - L1MEc LINE L1 -1528 4687 4020 1684 149 21 10 chr12 43201050 43201339 -100585116 - L1M3 LINE L1 -407 5776 5485 270 0 0 0 chr12 43201339 43201369 -100585086 + (TG)n Simple_repeat Simple_repeat 1 30 0 482 250 98 0 chr12 43201423 43201607 -100584848 - L1MEc LINE L1 -2206 4009 3808 188 35 35 0 chr12 43201719 43201748 -100584707 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 819 171 0 14 chr12 43201748 43201894 -100584561 - AluJb SINE Alu -32 280 137 1138 276 96 43 chr12 43202043 43203013 -100583442 - L1MEc LINE L1 -2826 3389 2369 486 309 73 20 chr12 43203028 43203151 -100583304 - L1MEc LINE L1 -4049 2347 2232 2105 113 7 3 chr12 43203151 43203443 -100583012 + AluSq SINE Alu 1 293 -20 486 309 73 20 chr12 43203443 43203565 -100582890 - L1MEc LINE L1 -4164 2232 2089 201 74 0 0 chr12 43203678 43203705 -100582750 + (TG)n Simple_repeat Simple_repeat 2 28 0 275 254 35 29 chr12 43203707 43203880 -100582575 + (TA)n Simple_repeat Simple_repeat 1 174 0 1760 142 51 0 chr12 43204189 43204485 -100581970 - MER44D DNA MER2_type -4 601 419 245 207 49 61 chr12 43204902 43204984 -100581471 - MARNA DNA Mariner -324 262 182 25 65 0 0 chr12 43205234 43205280 -100581175 + AT_rich Low_complexity Low_complexity 1 46 0 324 323 13 25 chr12 43205528 43205557 -100580898 + CT-rich Low_complexity Low_complexity 3 31 -127 2449 45 0 16 chr12 43205557 43205870 -100580585 - AluY SINE Alu -3 308 1 324 323 13 25 chr12 43205870 43205998 -100580457 + CT-rich Low_complexity Low_complexity 31 158 0 26 50 0 0 chr12 43206305 43206345 -100580110 + AT_rich Low_complexity Low_complexity 1 40 0 227 291 175 10 chr12 43206367 43206573 -100579882 - L1ME LINE L1 -206 5915 5676 1810 152 22 0 chr12 43206637 43206942 -100579513 - AluSx SINE Alu 0 311 1 299 330 27 21 chr12 43206946 43207134 -100579321 - L1ME LINE L1 -456 5665 5477 21 89 0 0 chr12 43207215 43207271 -100579184 + AT_rich Low_complexity Low_complexity 1 56 0 2135 126 3 0 chr12 43207359 43207668 -100578787 - AluSx SINE Alu -2 310 1 327 311 109 23 chr12 43207668 43207925 -100578530 - L1ME LINE L1 -983 5163 4885 26 50 0 0 chr12 43207985 43208025 -100578430 + AT_rich Low_complexity Low_complexity 1 40 0 325 255 199 63 chr12 43208176 43208462 -100577993 - L1MC4a LINE L1 -1871 5937 5613 23 78 0 0 chr12 43209041 43209092 -100577363 + AT_rich Low_complexity Low_complexity 1 51 0 28 109 0 0 chr12 43209132 43209251 -100577204 + AT_rich Low_complexity Low_complexity 1 119 0 586 276 8 15 chr12 43209257 43209391 -100577064 + L2 LINE L2 3136 3268 -4 638 246 138 9 chr12 43209411 43209643 -100576812 - Charlie7 DNA MER1_type -316 2296 2035 1555 214 3 3 chr12 43209978 43210282 -100576173 - AluJb SINE Alu -6 306 3 23 33 0 0 chr12 43210326 43210356 -100576099 + AT_rich Low_complexity Low_complexity 1 30 0 3464 221 89 52 chr12 43210482 43211180 -100575275 + L1MC4 LINE L1 6446 7203 -839 2269 88 0 0 chr12 43211180 43211476 -100574979 + AluY SINE Alu 16 311 0 3464 221 89 52 chr12 43211476 43211883 -100574572 + L1MC4 LINE L1 7203 7593 -449 275 194 57 65 chr12 43211958 43212082 -100574373 + L1MC4 LINE L1 7919 8041 -1 1783 144 7 7 chr12 43212221 43212498 -100573957 - AluJb SINE Alu -32 280 4 2941 243 119 69 chr12 43212502 43214187 -100572268 - Charlie7 DNA MER1_type -707 1905 136 318 87 0 0 chr12 43214606 43214652 -100571803 + (TG)n Simple_repeat Simple_repeat 2 47 0 441 294 62 19 chr12 43215032 43215243 -100571212 - L1ME3 LINE L1 -215 5947 5728 1589 138 66 29 chr12 43215748 43216095 -100570360 - L1MA9 LINE L1 -1 6311 5952 248 251 120 74 chr12 43216100 43216466 -100569989 - HAL1b LINE L1 -689 659 277 21 0 0 0 chr12 43218695 43218716 -100567739 + AT_rich Low_complexity Low_complexity 1 21 0 417 70 0 0 chr12 43218856 43218913 -100567542 + (TG)n Simple_repeat Simple_repeat 2 58 0 1766 153 3 14 chr12 43218913 43219195 -100567260 - AluSx SINE Alu -29 283 5 22 0 0 0 chr12 43219998 43220020 -100566435 + AT_rich Low_complexity Low_complexity 1 22 0 284 312 32 32 chr12 43220644 43220801 -100565654 + L1MC/D LINE L1 5724 5880 -1928 2441 64 0 0 chr12 43221062 43221360 -100565095 + AluY SINE Alu 1 298 -13 216 320 48 39 chr12 43221741 43221844 -100564611 - MIR3 SINE MIR -40 168 65 200 125 0 25 chr12 43222388 43222428 -100564027 + (TTA)n Simple_repeat Simple_repeat 2 40 0 461 305 84 28 chr12 43222744 43222957 -100563498 + L3 LINE CR1 1345 1569 -8 2123 98 14 11 chr12 43224505 43224790 -100561665 + AluSx SINE Alu 4 289 -23 207 0 0 0 chr12 43225734 43225757 -100560698 + (TG)n Simple_repeat Simple_repeat 2 24 0 1486 207 7 0 chr12 43225815 43226095 -100560360 - AluJo SINE Alu -30 282 1 2315 204 129 9 chr12 43226359 43227165 -100559290 + L1ME1 LINE L1 5056 6160 -6 1452 180 24 7 chr12 43227212 43227501 -100558954 + AluJo SINE Alu 3 296 -16 264 40 60 0 chr12 43227668 43227718 -100558737 + (TA)n Simple_repeat Simple_repeat 1 53 0 2029 142 0 16 chr12 43229861 43230178 -100556277 - AluSx SINE Alu 0 312 1 1589 133 3 117 chr12 43232354 43232678 -100553777 + AluJo SINE Alu 1 287 -15 25 0 0 0 chr12 43232692 43232717 -100553738 + AT_rich Low_complexity Low_complexity 1 25 0 7482 191 51 16 chr12 43232827 43234588 -100551867 + L1MA4 LINE L1 2345 4166 -1980 3112 155 40 11 chr12 43234609 43234990 -100551465 + L1MA4 LINE L1 5343 5712 -588 282 56 0 0 chr12 43234990 43235026 -100551429 + (TA)n Simple_repeat Simple_repeat 1 36 0 3112 155 40 11 chr12 43235026 43235521 -100550934 + L1MA4 LINE L1 5712 6293 -7 1462 203 0 4 chr12 43235749 43236015 -100550440 + AluJo SINE Alu 35 299 -13 25 0 0 0 chr12 43236220 43236245 -100550210 + AT_rich Low_complexity Low_complexity 1 25 0 1423 198 31 20 chr12 43236557 43236850 -100549605 - AluJo SINE Alu -3 299 4 319 268 186 15 chr12 43236855 43237194 -100549261 - L1ME4a LINE L1 -12 6109 5713 867 320 110 30 chr12 43237554 43237992 -100548463 - L2 LINE L2 0 3313 2841 1566 241 125 30 chr12 43238197 43239382 -100547073 - L1ME3 LINE L1 -46 6099 4773 228 300 0 0 chr12 43239872 43239952 -100546503 + T-rich Low_complexity Low_complexity 1 80 0 336 257 121 7 chr12 43239965 43240105 -100546350 - L1ME3 LINE L1 -5056 1063 908 209 182 26 39 chr12 43240184 43240261 -100546194 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 248 344 165 40 chr12 43240311 43240759 -100545696 - L1ME3 LINE L1 -5384 735 232 1833 117 52 28 chr12 43240902 43241192 -100545263 + AluSx SINE Alu 1 297 -15 352 273 101 0 chr12 43241372 43241511 -100544944 - L1MEc LINE L1 -3115 3267 3115 1833 134 92 0 chr12 43241517 43241845 -100544610 - L1MA3 LINE L1 0 6305 5948 656 256 12 0 chr12 43241846 43242014 -100544441 - L1MEc LINE L1 -3566 2816 2647 302 259 85 66 chr12 43242036 43242248 -100544207 - L1MEc LINE L1 -3952 2611 2396 547 302 133 3 chr12 43242250 43242604 -100543851 - L1MEc LINE L1 -4693 1691 1292 1061 173 0 0 chr12 43242606 43242774 -100543681 - FRAM SINE Alu -7 169 2 303 249 35 19 chr12 43242776 43242804 -100543651 - L1MEc LINE L1 -5097 1411 1385 1003 187 131 59 chr12 43242804 43243125 -100543330 - MER2 DNA MER2_type 0 344 1 303 249 35 19 chr12 43243125 43243256 -100543199 - L1MEc LINE L1 -5123 1385 1180 233 176 98 0 chr12 43243291 43243342 -100543113 + Tigger5 DNA MER2_type 1 56 -2267 521 129 94 0 chr12 43243346 43243431 -100543024 + Tigger5 DNA MER2_type 2231 2323 0 879 305 123 29 chr12 43243431 43244342 -100542113 - L1MEc LINE L1 -5344 1219 223 263 260 24 87 chr12 43244505 43244585 -100541870 - L1MEd LINE L1 -4701 1683 1612 2035 116 10 33 chr12 43244585 43244886 -100541569 + AluSx SINE Alu 1 294 -18 263 260 24 87 chr12 43244886 43244932 -100541523 - L1MEd LINE L1 -4772 1612 1565 673 292 61 18 chr12 43244935 43245454 -100541001 - L1MEd LINE L1 -4862 1510 1023 299 281 66 25 chr12 43245543 43245664 -100540791 - Charlie4 DNA MER1_type -15 1946 1821 463 179 17 144 chr12 43245667 43245754 -100540701 - Charlie4 DNA MER1_type -336 172 116 2329 91 0 7 chr12 43245754 43246063 -100540392 + AluSc SINE Alu 1 307 -2 463 179 17 144 chr12 43246063 43246148 -100540307 - Charlie4 DNA MER1_type -392 116 22 22 35 0 0 chr12 43246329 43246358 -100540097 + AT_rich Low_complexity Low_complexity 1 29 0 1699 168 0 20 chr12 43246358 43246650 -100539805 - AluJo SINE Alu -26 286 1 25 0 0 0 chr12 43247373 43247398 -100539057 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr12 43248064 43248097 -100538358 + AT_rich Low_complexity Low_complexity 1 33 0 315 314 16 103 chr12 43248552 43248621 -100537834 - MER5A DNA MER1_type 0 189 116 1814 157 18 7 chr12 43248621 43248907 -100537548 + AluJb SINE Alu 2 290 -22 183 114 0 0 chr12 43248907 43248942 -100537513 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 315 314 16 103 chr12 43248942 43248998 -100537457 - MER5A DNA MER1_type -72 117 83 2266 77 23 20 chr12 43248998 43249298 -100537157 - AluY SINE Alu -10 301 1 315 314 16 103 chr12 43249298 43249364 -100537091 - MER5A DNA MER1_type -106 83 13 1590 179 117 152 chr12 43251673 43252110 -100534345 - Charlie2a DNA MER1_type -6 2856 2405 1307 168 113 29 chr12 43252110 43252384 -100534071 + AluJo SINE Alu 1 297 -15 1590 179 117 152 chr12 43252384 43252611 -100533844 - Charlie2a DNA MER1_type -457 2405 2172 2357 92 0 0 chr12 43252611 43252904 -100533551 + AluSc SINE Alu 1 293 -16 1590 179 117 152 chr12 43252904 43253391 -100533064 - Charlie2a DNA MER1_type -690 2172 1744 457 198 158 0 chr12 43253399 43253500 -100532955 - MER5A DNA MER1_type 0 189 73 1256 142 46 14 chr12 43253502 43253721 -100532734 - AluJb SINE Alu -4 308 83 339 247 14 0 chr12 43253723 43253796 -100532659 - MER5A DNA MER1_type -114 75 2 880 208 68 30 chr12 43253796 43254061 -100532394 - Charlie2a DNA MER1_type -1118 1744 1470 1147 233 118 37 chr12 43254100 43254155 -100532300 - Charlie2b DNA MER1_type -2110 672 623 1552 181 64 17 chr12 43254155 43254453 -100532002 - AluJo SINE Alu 0 312 1 1147 233 118 37 chr12 43254453 43254745 -100531710 - Charlie2b DNA MER1_type -2159 623 297 541 251 218 14 chr12 43254774 43254985 -100531470 - MIR SINE MIR 0 262 9 475 247 211 0 chr12 43255007 43255197 -100531258 - Charlie2b DNA MER1_type -2542 240 11 298 232 110 0 chr12 43255611 43255693 -100530762 + MIR SINE MIR 60 150 -112 389 248 233 8 chr12 43256578 43256707 -100529748 + MIR SINE MIR 79 236 -26 224 272 37 25 chr12 43256761 43256842 -100529613 + MIR SINE MIR 175 256 -6 3496 123 10 8 chr12 43264038 43264543 -100521912 + MER1A DNA MER1_type 24 529 0 486 232 148 7 chr12 43264980 43265135 -100521320 - MIR SINE MIR -70 192 16 188 256 0 23 chr12 43265615 43265658 -100520797 + L2 LINE L2 3210 3251 -21 1587 167 0 69 chr12 43265847 43266165 -100520290 - AluJo SINE Alu -16 296 1 2249 109 20 0 chr12 43266197 43266501 -100519954 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 43266948 43266969 -100519486 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr12 43267876 43267905 -100518550 + (TC)n Simple_repeat Simple_repeat 2 30 0 1958 152 0 0 chr12 43267905 43268194 -100518261 - AluJb SINE Alu -23 289 1 862 130 0 0 chr12 43268379 43268494 -100517961 + FRAM SINE Alu 31 145 -31 186 43 0 0 chr12 43268495 43268518 -100517937 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 509 289 114 5 chr12 43268735 43268936 -100517519 - MIR SINE MIR -12 250 28 1921 152 42 6 chr12 43269265 43269601 -100516854 + MER7A DNA MER2_type 1 346 0 2218 90 10 0 chr12 43269876 43270166 -100516289 - AluSx SINE Alu -19 293 1 621 261 5 48 chr12 43270185 43270373 -100516082 + AluJo SINE Alu 118 297 -15 28 29 0 0 chr12 43270662 43270697 -100515758 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr12 43270729 43270793 -100515662 + AT_rich Low_complexity Low_complexity 1 64 0 1862 144 44 3 chr12 43271709 43272007 -100514448 - AluSx SINE Alu -2 310 1 317 243 157 49 chr12 43272251 43272436 -100514019 - MER112 DNA MER1_type -15 245 41 744 183 0 8 chr12 43272702 43272833 -100513622 + FLAM_A SINE Alu 7 136 -6 206 361 172 16 chr12 43273293 43273415 -100513040 - L2 LINE L2 -245 3027 2887 908 169 0 36 chr12 43273574 43273740 -100512715 + FRAM SINE Alu 1 160 -16 1683 171 0 32 chr12 43273969 43274279 -100512176 - AluJb SINE Alu 0 312 13 1038 186 98 104 chr12 43274374 43274933 -100511522 - L1MC5 LINE L1 -234 7727 7172 570 221 23 0 chr12 43274945 43275076 -100511379 - L1MC5 LINE L1 -855 7106 6973 289 221 5 168 chr12 43275110 43275300 -100511155 - L1MC5 LINE L1 -1000 6961 6803 306 379 14 0 chr12 43275303 43275448 -100511007 - L1MC4a LINE L1 -1218 6590 6444 22 94 0 0 chr12 43276037 43276101 -100510354 + AT_rich Low_complexity Low_complexity 1 64 0 373 275 130 34 chr12 43276478 43276740 -100509715 - L1MC4a LINE L1 -2025 5783 5497 1014 180 111 0 chr12 43276820 43277037 -100509418 - L1MC1 LINE L1 0 6333 6093 342 0 0 0 chr12 43277063 43277101 -100509354 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2043 132 0 0 chr12 43277103 43277383 -100509072 - AluSg SINE Alu -30 280 1 918 203 6 6 chr12 43277395 43277558 -100508897 - AluJb SINE Alu -20 292 130 186 71 0 0 chr12 43278366 43278394 -100508061 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2277 76 0 10 chr12 43278469 43278770 -100507685 - AluY SINE Alu -13 298 1 5047 177 26 14 chr12 43278780 43279786 -100506669 - L1MC2 LINE L1 -24 7115 6098 3307 226 58 25 chr12 43279781 43280898 -100505557 - L1MC2 LINE L1 -2179 4762 3609 * 1725 105 14 16 chr12 43280899 43281194 -100505261 - THE1C LTR MaLR -2 373 1 2138 214 96 11 chr12 43281200 43282057 -100504398 - L1MC2 LINE L1 -3334 3607 2675 13883 133 38 19 chr12 43282057 43282522 -100503933 - Tigger1 DNA MER2_type 0 2418 1963 2014 167 3 0 chr12 43282522 43282828 -100503627 + 7SLRNA srpRNA srpRNA 8 314 -6 13883 133 38 19 chr12 43282828 43283324 -100503131 - Tigger1 DNA MER2_type -455 1963 1478 1532 208 7 0 chr12 43283324 43283618 -100502837 + AluJo SINE Alu 1 296 -16 13883 133 38 19 chr12 43283618 43284751 -100501704 - Tigger1 DNA MER2_type -940 1478 368 2351 96 3 3 chr12 43284751 43285064 -100501391 + AluSp SINE Alu 1 313 0 13883 133 38 19 chr12 43285064 43285289 -100501166 - Tigger1 DNA MER2_type -2050 368 49 2292 89 0 10 chr12 43285289 43285592 -100500863 + AluY SINE Alu 1 300 -11 13883 133 38 19 chr12 43285592 43285642 -100500813 - Tigger1 DNA MER2_type -2369 49 1 3777 98 4 2 chr12 43285653 43286154 -100500301 + MER1A DNA MER1_type 28 529 0 3449 220 60 45 chr12 43286178 43288220 -100498235 - L1MC2 LINE L1 -4466 2656 11 180 77 0 0 chr12 43288997 43289023 -100497432 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 586 276 47 24 chr12 43289025 43289195 -100497260 + MIR SINE MIR 85 258 -4 193 152 0 152 chr12 43291328 43291394 -100495061 + L2 LINE L2 3257 3312 -1 486 284 142 14 chr12 43292142 43292360 -100494095 + MIR SINE MIR 3 248 -14 1962 144 4 0 chr12 43292598 43292900 -100493555 + AluSx SINE Alu 3 305 0 180 0 0 0 chr12 43293936 43293956 -100492499 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2551 111 16 0 chr12 43294060 43294429 -100492026 - THE1C LTR MaLR 0 375 1 7018 113 32 36 chr12 43294429 43295531 -100490924 - THE1C-int LTR MaLR 0 1580 484 23 0 0 0 chr12 43295727 43295750 -100490705 + AT_rich Low_complexity Low_complexity 1 23 0 194 298 61 53 chr12 43295858 43295989 -100490466 - L2 LINE L2 -1579 1735 1604 1565 166 14 8 chr12 43296024 43296324 -100490131 - MER61B LTR ERV1 -28 396 1 2084 57 0 0 chr12 43296444 43296691 -100489764 + AluY SINE Alu 50 296 -15 456 248 85 8 chr12 43297258 43297387 -100489068 + MER91B DNA MER1_type 26 164 -26 1864 133 29 7 chr12 43297387 43297666 -100488789 + AluSx SINE Alu 1 285 -27 254 280 56 28 chr12 43297759 43297902 -100488553 + L1ME4a LINE L1 5950 6096 -25 2194 101 0 13 chr12 43298135 43298433 -100488022 + AluSg SINE Alu 1 294 -16 28 48 0 0 chr12 43299179 43299221 -100487234 + AT_rich Low_complexity Low_complexity 1 42 0 2367 81 3 0 chr12 43299366 43299662 -100486793 + AluSg SINE Alu 1 297 -13 520 258 126 0 chr12 43300655 43300814 -100485641 + MIR3 SINE MIR 25 203 -5 214 171 0 0 chr12 43300961 43300996 -100485459 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 189 0 0 0 chr12 43301869 43301890 -100484565 + (TC)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr12 43302240 43302275 -100484180 + AT_rich Low_complexity Low_complexity 1 35 0 314 342 34 105 chr12 43303264 43303729 -100482726 + L2 LINE L2 2804 3235 -37 374 319 161 32 chr12 43303732 43303980 -100482475 + L2 LINE L2 2983 3262 -10 2238 98 0 0 chr12 43304028 43304314 -100482141 - AluSg SINE Alu -24 286 1 1112 195 32 0 chr12 43304317 43304568 -100481887 + L1MB3 LINE L1 4377 4635 -1511 2148 133 74 0 chr12 43304835 43305174 -100481281 + THE1B LTR MaLR 1 364 0 2109 233 98 11 chr12 43305383 43306006 -100480449 + L1MB3 LINE L1 4601 5277 -869 1057 190 54 23 chr12 43306011 43306269 -100480186 + L1MB3 LINE L1 5561 5826 -357 273 96 39 19 chr12 43306270 43306322 -100480133 - L1ME1 LINE L1 -18 6148 6096 664 176 0 8 chr12 43306327 43306446 -100480009 - AluJ SINE Alu -13 299 182 839 156 0 0 chr12 43306446 43306574 -100479881 - AluJ SINE Alu -179 133 6 2096 146 11 8 chr12 43306574 43306950 -100479505 + L1MB3 LINE L1 5807 6183 0 856 151 27 43 chr12 43306977 43307115 -100479340 + L1MB8 LINE L1 5996 6132 -46 2129 113 10 3 chr12 43307115 43307406 -100479049 + AluSx SINE Alu 1 293 -19 856 151 27 43 chr12 43307406 43307453 -100479002 + L1MB8 LINE L1 6132 6178 0 2447 92 0 0 chr12 43307473 43307779 -100478676 + AluSc SINE Alu 1 306 -3 2330 63 0 7 chr12 43307804 43308091 -100478364 + AluY SINE Alu 1 285 -26 210 128 0 0 chr12 43308091 43308130 -100478325 + (TA)n Simple_repeat Simple_repeat 2 40 0 320 169 13 52 chr12 43308142 43308219 -100478236 + L1MCa LINE L1 1995 2068 -4358 366 285 111 43 chr12 43308249 43308456 -100477999 - HAL1 LINE L1 -83 2424 2204 2073 147 0 0 chr12 43308530 43308842 -100477613 - AluSx SINE Alu 0 312 1 365 315 51 60 chr12 43308873 43309108 -100477347 - HAL1 LINE L1 -462 2045 1813 1300 211 125 41 chr12 43309189 43309640 -100476815 - HAL1 LINE L1 -847 1660 1065 2460 80 0 0 chr12 43309640 43309951 -100476504 - AluY SINE Alu 0 311 1 1300 211 125 41 chr12 43309951 43310055 -100476400 - HAL1 LINE L1 -1442 1065 971 1628 151 0 60 chr12 43310160 43310458 -100475997 - AluJo SINE Alu -31 281 2 1995 69 0 47 chr12 43311017 43311292 -100475163 - AluSg SINE Alu -16 294 33 22 88 0 0 chr12 43311362 43311419 -100475036 + AT_rich Low_complexity Low_complexity 1 57 0 1468 226 162 40 chr12 43311419 43312024 -100474431 - L1ME3A LINE L1 -50 6120 5442 26 30 0 0 chr12 43312332 43312365 -100474090 + AT_rich Low_complexity Low_complexity 1 33 0 2558 69 0 0 chr12 43312892 43313196 -100473259 + AluSc SINE Alu 1 304 -5 203 184 0 0 chr12 43313742 43313780 -100472675 + A-rich Low_complexity Low_complexity 1 38 0 297 75 0 0 chr12 43314405 43314445 -100472010 + (T)n Simple_repeat Simple_repeat 1 40 0 507 216 109 69 chr12 43317175 43317504 -100468951 - L1MC4a LINE L1 -87 6034 5696 441 260 121 13 chr12 43317510 43317683 -100468772 - MIR SINE MIR -34 228 32 1837 163 0 31 chr12 43318372 43318691 -100467764 - AluSx SINE Alu -3 309 1 1647 209 3 3 chr12 43318756 43319053 -100467402 + AluJb SINE Alu 1 297 -15 839 117 8 8 chr12 43319702 43319822 -100466633 - FLAM_C SINE Alu -23 120 1 321 242 99 39 chr12 43320111 43320157 -100466298 - L1ME3A LINE L1 -15 6155 6113 828 165 0 0 chr12 43320157 43320290 -100466165 - FLAM_A SINE Alu 0 133 1 321 242 99 39 chr12 43320290 43320425 -100466030 - L1ME3A LINE L1 -57 6113 5963 490 230 227 29 chr12 43320492 43320770 -100465685 - L1ME3A LINE L1 -202 5960 5628 21 0 0 0 chr12 43321137 43321158 -100465297 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 61 0 chr12 43321352 43321467 -100464988 + MIR SINE MIR 121 242 -20 1761 169 28 0 chr12 43321942 43322226 -100464229 + AluJb SINE Alu 1 292 -20 507 177 122 61 chr12 43322309 43322456 -100463999 - MER5B DNA MER1_type -14 164 9 292 214 11 67 chr12 43323398 43323487 -100462968 - L1ME3A LINE L1 -518 5603 5520 2306 87 3 10 chr12 43323575 43323873 -100462582 - AluSp SINE Alu -17 296 1 1744 174 10 0 chr12 43324663 43324961 -100461494 + AluJo SINE Alu 1 301 -11 396 298 181 12 chr12 43325120 43325291 -100461164 + MIR SINE MIR 47 246 -16 2179 119 0 3 chr12 43325440 43325734 -100460721 + AluJb SINE Alu 13 305 -7 244 250 59 0 chr12 43325758 43325826 -100460629 + L1MC/D LINE L1 5689 5760 -2048 1712 181 0 3 chr12 43325992 43326279 -100460176 - AluJo SINE Alu -20 292 7 2224 73 18 0 chr12 43326557 43326843 -100459612 + AluY SINE Alu 1 291 -20 2049 119 34 0 chr12 43326916 43327210 -100459245 + AluSx SINE Alu 1 304 -8 2427 73 3 0 chr12 43329462 43329763 -100456692 - AluSq SINE Alu -11 302 1 29 0 0 0 chr12 43332142 43332171 -100454284 + AT_rich Low_complexity Low_complexity 1 29 0 1070 138 6 0 chr12 43332171 43332331 -100454124 - AluSg/x SINE Alu -18 294 134 2171 99 27 0 chr12 43332331 43332623 -100453832 - AluSg SINE Alu -10 300 1 2161 86 21 7 chr12 43333753 43334043 -100452412 + AluSq SINE Alu 1 294 -19 30 27 0 0 chr12 43337343 43337380 -100449075 + AT_rich Low_complexity Low_complexity 1 37 0 2042 123 0 39 chr12 43337631 43337940 -100448515 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 43338013 43338034 -100448421 + AT_rich Low_complexity Low_complexity 1 21 0 810 169 38 16 chr12 43338169 43338353 -100448102 - L1MA8 LINE L1 -3 6288 6101 917 151 164 9 chr12 43338353 43338572 -100447883 - Tigger2 DNA MER2_type -2 2716 2464 1562 155 41 4 chr12 43338628 43338899 -100447556 - Tigger2 DNA MER2_type -1961 757 477 558 165 0 0 chr12 43338949 43339034 -100447421 - AluJb SINE Alu -24 288 204 2191 149 46 14 chr12 43339034 43339471 -100446984 - Tigger2 DNA MER2_type -2267 451 1 1367 155 78 14 chr12 43339471 43339767 -100446688 - L1MA7 LINE L1 -195 6096 5782 23 0 0 0 chr12 43339943 43339966 -100446489 + AT_rich Low_complexity Low_complexity 1 23 0 453 219 54 58 chr12 43340454 43340685 -100445770 - L1ME2 LINE L1 -9 6157 5924 829 161 0 15 chr12 43392368 43392505 -100393950 + FRAM SINE Alu 21 155 -21 601 226 60 18 chr12 43392511 43392679 -100393776 + MER104 DNA Tc2 6 180 0 1000 211 10 14 chr12 43392823 43393031 -100393424 - MER3 DNA MER1_type 0 209 3 477 297 140 22 chr12 43393138 43393360 -100393095 + MIR SINE MIR 14 261 -1 280 390 53 18 chr12 43393482 43393710 -100392745 - L2 LINE L2 -201 3071 2836 3147 242 116 28 chr12 43393837 43395253 -100391202 + L2 LINE L2 1784 3313 0 270 321 48 0 chr12 43395306 43395390 -100391065 - L2 LINE L2 0 3272 3185 236 252 224 28 chr12 43395372 43395515 -100390940 - L2 LINE L2 -858 2456 2286 * 187 316 51 51 chr12 43396586 43396684 -100389771 + L2 LINE L2 3168 3265 -7 288 316 128 23 chr12 43396871 43397004 -100389451 - L2 LINE L2 -5 3267 3121 450 316 151 0 chr12 43397064 43397216 -100389239 - MER5A DNA MER1_type -6 183 9 242 371 29 0 chr12 43397215 43397320 -100389135 - MIR SINE MIR -63 199 92 * 7531 135 45 3 chr12 43397323 43398472 -100387983 + ERVL-B2 LTR ERVL 3422 4619 -1145 1403 142 45 61 chr12 43398579 43399919 -100386536 - SVA Other Other -710 868 432 7532 124 20 14 chr12 43399920 43401062 -100385393 + ERVL-B2 LTR ERVL 4609 5757 -7 3329 150 6 29 chr12 43401062 43401589 -100384866 + MLT2B2 LTR ERVL 1 515 0 939 175 28 88 chr12 43401748 43401999 -100384456 - MER106A DNA MER1_type 0 236 1 639 306 141 8 chr12 43402042 43402290 -100384165 - L3 LINE CR1 -1 1576 1296 181 305 95 19 chr12 43402426 43402531 -100383924 - L3 LINE CR1 -561 1016 904 356 292 122 22 chr12 43402662 43402974 -100383481 + HAL1 LINE L1 2165 2507 0 199 247 86 49 chr12 43403032 43403113 -100383342 + MIR3 SINE MIR 77 160 -48 2041 156 0 0 chr12 43403147 43403455 -100383000 + AluJb SINE Alu 1 308 -4 313 291 103 17 chr12 43403736 43403853 -100382602 - MER112 DNA MER1_type -106 154 28 245 317 120 21 chr12 43405485 43405627 -100380828 + MIR SINE MIR 100 255 -7 428 196 18 36 chr12 43406671 43406783 -100379672 + L1MC1 LINE L1 6224 6333 0 1310 191 43 79 chr12 43407169 43407605 -100378850 - MLT2B1 LTR ERVL -5 515 2 508 320 52 26 chr12 43408016 43408210 -100378245 + MIR SINE MIR 15 213 -49 2290 189 10 50 chr12 43408302 43408821 -100377634 - MLT1D LTR MaLR 0 505 8 908 254 163 38 chr12 43409005 43409666 -100376789 - L1ME4a LINE L1 -37 6084 5341 989 279 43 62 chr12 43410054 43410470 -100375985 - HAL1 LINE L1 -2049 458 51 2191 92 0 64 chr12 43411069 43411396 -100375059 + AluSg SINE Alu 1 306 -4 1542 191 72 0 chr12 43411785 43412062 -100374393 - AluJb SINE Alu -15 297 1 1836 167 4 0 chr12 43412359 43412684 -100373771 + AluJo SINE Alu 2 327 0 192 152 0 0 chr12 43413868 43413901 -100372554 + (CA)n Simple_repeat Simple_repeat 1 33 0 3601 25 0 0 chr12 43413960 43414356 -100372099 - L1PA4 LINE L1 0 6155 5760 193 150 25 0 chr12 43414447 43414487 -100371968 - L2 LINE L2 -4 3309 3269 204 338 103 41 chr12 43414749 43414894 -100371561 - L3 LINE CR1 -121 1456 1303 1581 306 102 52 chr12 43415030 43415520 -100370935 - L3 LINE CR1 -353 1224 760 1671 209 10 0 chr12 43415520 43415827 -100370628 - AluJb SINE Alu -2 310 1 790 203 0 0 chr12 43415831 43415964 -100370491 - FLAM_A SINE Alu 0 133 1 1581 306 102 52 chr12 43415964 43416448 -100370007 - L3 LINE CR1 -819 758 196 387 105 0 0 chr12 43416504 43416561 -100369894 + (TCC)n Simple_repeat Simple_repeat 3 59 0 1958 154 0 28 chr12 43416564 43416883 -100369572 - AluSx SINE Alu -2 310 1 217 265 199 44 chr12 43417108 43417244 -100369211 - MIR SINE MIR -98 164 8 24 0 0 0 chr12 43417316 43417340 -100369115 + AT_rich Low_complexity Low_complexity 1 24 0 1939 107 14 45 chr12 43417343 43417634 -100368821 + AluSx SINE Alu 1 282 -30 2359 171 31 0 chr12 43417732 43418123 -100368332 + MER57A LTR ERV1 1 403 0 567 249 100 62 chr12 43418638 43419118 -100367337 - L1MEd LINE L1 -4822 1604 907 293 280 21 0 chr12 43419119 43419212 -100367243 + MIR SINE MIR 147 241 -21 201 74 0 0 chr12 43419513 43419540 -100366915 + (A)n Simple_repeat Simple_repeat 1 27 0 754 176 8 23 chr12 43419550 43419681 -100366774 + FLAM_C SINE Alu 3 131 -12 253 269 124 55 chr12 43419743 43419944 -100366511 + L1M4 LINE L1 3969 4183 -1963 1680 176 3 13 chr12 43420235 43420541 -100365914 + AluJb SINE Alu 1 303 -9 272 295 190 64 chr12 43420655 43421092 -100365363 - L2 LINE L2 -18 3295 2804 274 282 24 0 chr12 43421100 43421185 -100365270 - MLT1L LTR MaLR -6 609 523 23 0 0 0 chr12 43421192 43421215 -100365240 + AT_rich Low_complexity Low_complexity 1 23 0 2289 105 7 10 chr12 43421420 43421724 -100364731 - AluSx SINE Alu -9 303 1 350 228 76 0 chr12 43421848 43421927 -100364528 - MLT1L LTR MaLR -410 205 121 960 153 9 96 chr12 43421961 43422190 -100364265 + Charlie4 DNA MER1_type 5 213 -1748 2243 114 0 0 chr12 43422606 43422903 -100363552 + AluSx SINE Alu 1 297 -15 512 309 105 0 chr12 43422935 43423145 -100363310 + MIR SINE MIR 31 262 0 2360 92 3 0 chr12 43423657 43423961 -100362494 + AluSx SINE Alu 1 305 -7 591 71 0 0 chr12 43424294 43424379 -100362076 + (CTGGGG)n Simple_repeat Simple_repeat 1 85 0 297 225 42 14 chr12 43425089 43425160 -100361295 - MER96 DNA MER1_type? -13 162 90 282 133 0 0 chr12 43425240 43425285 -100361170 - MIR SINE MIR -26 236 192 313 328 188 16 chr12 43426782 43426910 -100359545 + L2 LINE L2 3123 3272 0 294 73 0 0 chr12 43427089 43427130 -100359325 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 188 200 0 0 chr12 43427131 43427166 -100359289 - L2 LINE L2 -14 3299 3265 195 42 0 0 chr12 43427830 43427854 -100358601 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 261 119 0 0 chr12 43429616 43429658 -100356797 + (TTG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 43430771 43430792 -100355663 + AT_rich Low_complexity Low_complexity 1 21 0 2067 134 7 0 chr12 43430939 43431246 -100355209 - AluSx SINE Alu -3 309 1 246 271 14 14 chr12 43431335 43431405 -100355050 - MIR3 SINE MIR -6 202 133 23 0 0 0 chr12 43431667 43431690 -100354765 + AT_rich Low_complexity Low_complexity 1 23 0 2352 53 3 10 chr12 43431955 43432259 -100354196 - AluY SINE Alu -9 302 1 722 208 60 102 chr12 43432338 43432603 -100353852 - MER112 DNA MER1_type -2 254 1 507 240 59 54 chr12 43433381 43433585 -100352870 - MIR SINE MIR -25 237 33 2119 82 33 56 chr12 43433866 43434171 -100352284 + AluSx SINE Alu 1 298 -14 340 150 3 195 chr12 43434225 43434373 -100352082 + MER20 DNA MER1_type 1 125 -94 3464 179 76 4 chr12 43434872 43435597 -100350858 + L1MB7 LINE L1 5401 6177 -7 386 291 60 22 chr12 43435601 43435735 -100350720 - L2 LINE L2 -12 3301 3163 1704 136 7 51 chr12 43436688 43436982 -100349473 - AluJo SINE Alu -21 291 11 307 254 77 39 chr12 43437890 43438020 -100348435 - MIR SINE MIR -56 206 72 423 0 0 0 chr12 43438110 43438157 -100348298 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2074 121 0 0 chr12 43438159 43438440 -100348015 - AluSx SINE Alu -31 281 1 1556 146 0 108 chr12 43438709 43439044 -100347411 + AluJb SINE Alu 1 299 -13 2785 13 0 0 chr12 43439050 43439352 -100347103 - AluYa5 SINE Alu -9 302 1 346 264 104 37 chr12 43439462 43439625 -100346830 - MIR SINE MIR -36 226 53 1749 175 24 0 chr12 43441924 43442035 -100344420 + AluJb SINE Alu 1 108 -204 185 0 0 39 chr12 43442035 43442061 -100344394 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1749 175 24 0 chr12 43442061 43442246 -100344209 + AluJb SINE Alu 108 304 -8 222 214 68 0 chr12 43442451 43442554 -100343901 + (TA)n Simple_repeat Simple_repeat 1 110 0 301 179 60 0 chr12 43442566 43442650 -100343805 + (TATAA)n Simple_repeat Simple_repeat 2 90 0 434 312 0 16 chr12 43442671 43442796 -100343659 - L2 LINE L2 -20 3293 3171 2018 98 0 0 chr12 43442810 43443065 -100343390 + AluSq SINE Alu 1 255 -58 22 35 0 0 chr12 43443074 43443103 -100343352 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 43443154 43443180 -100343275 + (TG)n Simple_repeat Simple_repeat 2 27 0 828 239 98 17 chr12 43443366 43443600 -100342855 + MIR SINE MIR 10 262 0 928 181 0 6 chr12 43443695 43443855 -100342600 + AluJb SINE Alu 136 294 -18 195 242 11 22 chr12 43443924 43444015 -100342440 + GA-rich Low_complexity Low_complexity 3 92 0 281 309 0 0 chr12 43444399 43444467 -100341988 - L2 LINE L2 -205 3067 3000 1622 197 17 0 chr12 43445127 43445416 -100341039 + AluJb SINE Alu 1 294 -18 888 267 86 75 chr12 43445523 43445976 -100340479 - L2 LINE L2 -20 3293 2836 828 230 85 94 chr12 43445985 43446398 -100340057 - Charlie7 DNA MER1_type -2148 464 56 563 250 0 0 chr12 43446879 43446987 -100339468 - MER81 DNA DNA -6 108 1 357 43 0 0 chr12 43447252 43447299 -100339156 + (CA)n Simple_repeat Simple_repeat 2 48 0 1021 268 97 46 chr12 43448317 43449032 -100337423 - L2 LINE L2 -1 3312 2440 2454 141 63 24 chr12 43449032 43449444 -100337011 + MSTA LTR MaLR 1 428 0 1021 268 97 46 chr12 43449444 43449576 -100336879 - L2 LINE L2 -873 2440 2316 590 243 56 80 chr12 43449623 43449961 -100336494 - L1MC5 LINE L1 -30 7931 7602 4363 181 54 13 chr12 43449968 43450588 -100335867 + L1MB3 LINE L1 4812 5406 -777 222 37 0 0 chr12 43450588 43450615 -100335840 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4363 181 54 13 chr12 43450615 43451309 -100335146 + L1MB3 LINE L1 5406 6182 -1 595 257 83 38 chr12 43451310 43451754 -100334701 - L1MC5 LINE L1 -347 7614 7244 * 1412 265 87 63 chr12 43451751 43452038 -100334417 - L1MC4 LINE L1 -739 7222 6943 2359 105 3 0 chr12 43452038 43452344 -100334111 - AluSq SINE Alu -6 307 1 1412 265 87 63 chr12 43452344 43452441 -100334014 - L1MC4 LINE L1 -1018 6943 6850 1753 184 33 0 chr12 43452441 43452740 -100333715 - AluJo SINE Alu -3 309 1 1412 265 87 63 chr12 43452740 43453054 -100333401 - L1MC4 LINE L1 -1111 6850 6545 2342 125 31 19 chr12 43453054 43453414 -100333041 - THE1B LTR MaLR 0 364 1 2136 136 0 0 chr12 43453421 43453723 -100332732 - AluSx SINE Alu -10 302 1 1412 265 87 63 chr12 43453723 43453735 -100332720 - L1MC4 LINE L1 -1421 6540 6530 197 0 71 0 chr12 43453735 43453763 -100332692 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1741 187 7 0 chr12 43453770 43454054 -100332401 - AluJb SINE Alu -26 286 1 1412 265 87 63 chr12 43454054 43455419 -100331036 - L1MC4 LINE L1 -1436 6525 5194 1870 158 0 26 chr12 43455419 43455729 -100330726 - AluJo SINE Alu -9 303 2 1412 265 87 63 chr12 43455729 43456310 -100330145 - L1MC4 LINE L1 -2767 5194 4628 2505 49 0 13 chr12 43456310 43456616 -100329839 - AluY SINE Alu -9 302 1 1412 265 87 63 chr12 43456616 43456832 -100329623 - L1MC4 LINE L1 -3333 4628 4419 677 122 103 0 chr12 43456832 43456939 -100329516 + FLAM_C SINE Alu 1 118 -15 1412 265 87 63 chr12 43456939 43457238 -100329217 - L1MC4 LINE L1 -3542 4419 4018 502 252 145 25 chr12 43457350 43457509 -100328946 - MER5A DNA MER1_type -3 186 9 344 227 80 0 chr12 43458134 43458209 -100328246 - L2 LINE L2 -34 3279 3199 228 286 95 38 chr12 43458247 43458352 -100328103 - MER5B DNA MER1_type -20 158 48 302 268 162 33 chr12 43460740 43460945 -100325510 + MIR SINE MIR 13 256 -6 239 217 105 0 chr12 43460974 43461065 -100325390 + MIR SINE MIR 104 211 -51 261 0 0 0 chr12 43461896 43461925 -100324530 + (A)n Simple_repeat Simple_repeat 1 29 0 32 57 0 0 chr12 43462029 43462082 -100324373 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr12 43462102 43462125 -100324330 + AT_rich Low_complexity Low_complexity 1 23 0 372 250 50 0 chr12 43462131 43462231 -100324224 - MER106B DNA MER1_type -907 152 48 427 344 173 2 chr12 43462730 43463158 -100323297 + L2 LINE L2 2201 2701 -613 1319 142 164 51 chr12 43464711 43464985 -100321470 - AluJo SINE Alu -7 305 1 28 0 0 0 chr12 43465401 43465429 -100321026 + AT_rich Low_complexity Low_complexity 1 28 0 764 183 8 0 chr12 43465435 43465561 -100320894 - FLAM_A SINE Alu -6 127 1 1173 91 246 5 chr12 43465693 43465880 -100320575 + AluSg1 SINE Alu 1 232 -77 270 217 0 0 chr12 43465885 43465954 -100320501 + GA-rich Low_complexity Low_complexity 3 71 0 2454 84 0 6 chr12 43467789 43468100 -100318355 + AluSc SINE Alu 1 309 0 234 0 0 0 chr12 43468224 43468250 -100318205 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr12 43468619 43468655 -100317800 + AT_rich Low_complexity Low_complexity 1 36 0 506 283 75 57 chr12 43469396 43469601 -100316854 + HAL1 LINE L1 859 1072 -1435 1812 185 7 3 chr12 43469601 43469898 -100316557 + AluJo SINE Alu 6 303 -9 506 283 75 57 chr12 43469898 43469957 -100316498 + HAL1 LINE L1 1072 1128 -1379 977 168 6 35 chr12 43469960 43470133 -100316322 + FRAM SINE Alu 1 163 -13 491 238 104 18 chr12 43470183 43470347 -100316108 + FRAM SINE Alu 1 176 0 406 278 119 63 chr12 43470423 43470572 -100315883 + HAL1 LINE L1 1290 1429 -1078 1800 149 23 26 chr12 43470572 43470880 -100315575 + AluJo SINE Alu 5 311 -1 406 278 119 63 chr12 43470880 43471065 -100315390 + HAL1 LINE L1 1429 1643 -864 972 267 11 30 chr12 43471071 43471337 -100315118 - MIR SINE MIR 0 262 2 314 305 0 25 chr12 43471356 43471474 -100314981 + HAL1 LINE L1 1655 1769 -738 2371 137 31 49 chr12 43472117 43472439 -100314016 + MER65A LTR ERV1 1 314 -131 2183 96 30 3 chr12 43472439 43472741 -100313714 + AluSg SINE Alu 1 310 0 2371 137 31 49 chr12 43472741 43472871 -100313584 + MER65A LTR ERV1 314 445 0 272 344 193 12 chr12 43473174 43473444 -100313011 - L2 LINE L2 -229 3043 2823 848 274 71 69 chr12 43473444 43473907 -100312548 + LTR16B LTR ERVL 1 464 0 272 344 193 12 chr12 43473907 43474193 -100312262 - L2 LINE L2 -449 2823 2392 1194 184 26 13 chr12 43474380 43474608 -100311847 + AluJb SINE Alu 74 304 -8 2103 133 3 3 chr12 43474818 43475118 -100311337 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr12 43475120 43475141 -100311314 + (GA)n Simple_repeat Simple_repeat 2 22 0 1018 197 26 11 chr12 43475141 43475372 -100311083 + MLT1D LTR MaLR 237 501 -4 215 217 12 72 chr12 43475851 43475934 -100310521 + (TA)n Simple_repeat Simple_repeat 2 79 0 303 211 79 0 chr12 43475935 43476049 -100310406 + L1ME4a LINE L1 5994 6116 -5 23 92 0 0 chr12 43476052 43476117 -100310338 + AT_rich Low_complexity Low_complexity 1 65 0 365 327 86 32 chr12 43476899 43477119 -100309336 + L2 LINE L2 3082 3313 0 364 353 134 28 chr12 43477413 43478264 -100308191 - L2 LINE L2 -167 3105 2127 21 71 0 0 chr12 43478432 43478474 -100307981 + AT_rich Low_complexity Low_complexity 1 42 0 3372 124 12 0 chr12 43479471 43479977 -100306478 - MER41E LTR ERV1 0 512 1 279 262 199 21 chr12 43480659 43480850 -100305605 + L2 LINE L2 2992 3216 -97 468 261 70 35 chr12 43481800 43481999 -100304456 + MIR SINE MIR 57 262 0 665 203 271 21 chr12 43482620 43482812 -100303643 - MIR SINE MIR -21 241 2 1350 226 191 31 chr12 43482852 43483361 -100303094 - MLT1E LTR MaLR 0 593 4 479 191 0 0 chr12 43483396 43483485 -100302970 - MIR SINE MIR -6 256 168 1693 152 62 17 chr12 43483785 43484074 -100302381 - AluJb SINE Alu -10 302 1 232 285 120 50 chr12 43484632 43484990 -100301465 + L1M4 LINE L1 3715 4097 -2049 226 243 19 29 chr12 43485111 43485214 -100301241 + (TA)n Simple_repeat Simple_repeat 1 102 0 2159 119 0 0 chr12 43485391 43485677 -100300778 - AluSx SINE Alu -23 289 4 2112 125 7 0 chr12 43485774 43486063 -100300392 + AluSg SINE Alu 1 291 -19 1982 171 3 0 chr12 43486121 43486419 -100300036 - AluJo SINE Alu -13 299 1 259 319 43 11 chr12 43487203 43487297 -100299158 - L2 LINE L2 -2 3270 3174 1015 322 136 37 chr12 43487465 43488583 -100297872 - L2 LINE L2 -1 3271 2265 1474 188 8 160 chr12 43488583 43488646 -100297809 - MLT1D LTR MaLR 0 505 434 1657 159 25 53 chr12 43488646 43488966 -100297489 + AluJb SINE Alu 1 311 -1 1474 188 8 160 chr12 43488966 43488988 -100297467 - MLT1D LTR MaLR -71 434 410 1853 168 10 10 chr12 43488988 43489285 -100297170 + AluJo SINE Alu 2 298 -14 1474 188 8 160 chr12 43489285 43489793 -100296662 - MLT1D LTR MaLR -95 410 1 1015 322 136 37 chr12 43489793 43489822 -100296633 - L2 LINE L2 -1007 2265 2005 613 245 29 0 chr12 43489857 43489996 -100296459 + MIR SINE MIR 85 227 -35 237 339 115 16 chr12 43490026 43490218 -100296237 - L2 LINE L2 -1354 1960 1750 285 222 78 0 chr12 43490817 43490907 -100295548 - L1MC5 LINE L1 -65 7896 7800 2261 92 45 36 chr12 43490946 43491303 -100295152 + THE1B LTR MaLR 5 364 0 189 0 0 0 chr12 43491324 43491345 -100295110 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1822 163 0 3 chr12 43491352 43491640 -100294815 + AluJb SINE Alu 1 287 -25 47 70 0 9 chr12 43491640 43491680 -100294775 + AT_rich Low_complexity Low_complexity 1 40 -73 1912 134 14 14 chr12 43491680 43491970 -100294485 + AluJb SINE Alu 1 290 -22 47 70 0 9 chr12 43491970 43492043 -100294412 + AT_rich Low_complexity Low_complexity 40 113 0 28 29 0 0 chr12 43493026 43493061 -100293394 + AT_rich Low_complexity Low_complexity 1 35 0 409 205 24 0 chr12 43493129 43493212 -100293243 + MLT1J LTR MaLR 104 188 -323 1045 197 3 88 chr12 43493249 43493373 -100293082 + L1MB3 LINE L1 4898 5031 -1115 2853 116 38 7 chr12 43493373 43493820 -100292635 - MER65C LTR ERV1 0 461 1 2443 94 0 0 chr12 43493829 43494137 -100292318 - AluY SINE Alu -3 308 1 1045 197 3 88 chr12 43494137 43494262 -100292193 + L1MB3 LINE L1 5039 5118 -1028 1600 134 123 15 chr12 43494262 43494523 -100291932 - AluSx SINE Alu -23 289 1 1045 197 3 88 chr12 43494523 43494638 -100291817 + L1MB3 LINE L1 5118 5241 -905 1631 173 32 29 chr12 43494638 43494885 -100291570 - MER7A DNA MER2_type -2692 346 98 4065 140 120 7 chr12 43494885 43495627 -100290828 + LTR1B LTR ERV1 1 826 0 1631 173 32 29 chr12 43495627 43495725 -100290730 - MER7A DNA MER2_type -2940 98 2 4832 146 20 34 chr12 43495740 43496159 -100290296 + L1MB3 LINE L1 5254 5677 -506 1632 171 58 0 chr12 43496159 43496433 -100290022 + AluJb SINE Alu 2 291 -21 4832 146 20 34 chr12 43496433 43496946 -100289509 + L1MB3 LINE L1 5677 6173 -10 372 213 0 0 chr12 43496988 43497063 -100289392 + MLT1J LTR MaLR 228 302 -209 203 231 51 0 chr12 43497067 43497106 -100289349 + MER91 DNA MER1_type 24 64 -76 409 168 53 11 chr12 43497116 43497211 -100289244 + MLT1J LTR MaLR 413 511 0 359 0 43 0 chr12 43497217 43497263 -100289192 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 215 277 0 0 chr12 43497656 43497721 -100288734 - MIR SINE MIR -34 228 164 747 290 14 18 chr12 43498298 43498519 -100287936 + LTR16C LTR ERVL 188 407 -84 3635 191 14 4 chr12 43498524 43499227 -100287228 + MER21-int LTR ERV1 14 723 -3468 1563 257 71 42 chr12 43499285 43499946 -100286509 - MSTC-int LTR MaLR -667 984 305 1981 146 34 3 chr12 43499946 43500146 -100286309 - MSTC LTR MaLR -89 339 124 2026 164 49 8 chr12 43500146 43500531 -100285924 + MER57A LTR ERV1 1 401 -2 1981 146 34 3 chr12 43500531 43500653 -100285802 - MSTC LTR MaLR -304 124 7 3501 227 38 17 chr12 43500663 43501523 -100284932 + MER21-int LTR ERV1 760 1637 -2554 2988 188 26 3 chr12 43501603 43502172 -100284283 + MER21-int LTR ERV1 1638 2219 -1972 1174 131 55 5 chr12 43502179 43502378 -100284077 + MER2 DNA MER2_type 2 210 -135 29 0 0 0 chr12 43502423 43502452 -100284003 + AT_rich Low_complexity Low_complexity 1 29 0 692 142 58 8 chr12 43502452 43502572 -100283883 - FLAM_C SINE Alu -17 126 1 4187 187 39 13 chr12 43502637 43503499 -100282956 + MER21-int LTR ERV1 2241 3104 -1087 213 308 67 39 chr12 43503977 43504081 -100282374 - L2 LINE L2 0 3272 3166 863 132 0 16 chr12 43504654 43504783 -100281672 + FLAM_C SINE Alu 4 130 -3 1975 154 0 3 chr12 43504787 43505106 -100281349 + AluSx SINE Alu 1 318 0 361 214 11 0 chr12 43505494 43505583 -100280872 + L1MEc LINE L1 1902 1991 -4405 966 231 24 47 chr12 43506024 43506174 -100280281 + MIR SINE MIR 13 156 -106 2197 110 35 27 chr12 43506174 43506546 -100279909 - THE1C LTR MaLR 0 375 1 966 231 24 47 chr12 43506546 43506650 -100279805 + MIR SINE MIR 156 261 -1 304 246 0 0 chr12 43506988 43507049 -100279406 - L2 LINE L2 -7 3306 3246 3520 181 95 20 chr12 43507226 43507972 -100278483 - MER21B LTR ERV1 -61 802 1 1668 178 21 66 chr12 43508077 43508499 -100277956 + MER57A LTR ERV1 1 403 0 2260 133 99 22 chr12 43508679 43509094 -100277361 - MER72 LTR ERV1 0 722 276 6381 173 165 20 chr12 43509100 43510633 -100275822 - MER52A LTR ERV1 0 1755 1 1369 168 22 11 chr12 43510635 43510903 -100275552 - MER72 LTR ERV1 -451 271 1 2341 80 0 0 chr12 43511875 43512162 -100274293 + AluSg SINE Alu 1 287 -23 237 33 0 0 chr12 43512641 43512671 -100273784 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 579 274 33 52 chr12 43514393 43514610 -100271845 - L1MEc LINE L1 -4729 1581 1372 1924 130 27 30 chr12 43514610 43514909 -100271546 - AluSx SINE Alu -14 298 1 579 274 33 52 chr12 43514909 43515053 -100271402 - L1MEc LINE L1 -4938 1372 1227 243 0 0 0 chr12 43515075 43515102 -100271353 + (TA)n Simple_repeat Simple_repeat 2 28 0 868 92 8 0 chr12 43515108 43515239 -100271216 - L1PA13 LINE L1 0 6163 6032 340 283 66 75 chr12 43515254 43515480 -100270975 - L1MEc LINE L1 -5732 387 164 313 205 0 51 chr12 43515528 43515606 -100270849 - L1MEc LINE L1 -5974 145 72 1510 127 4 8 chr12 43515682 43515919 -100270536 + L1PA11 LINE L1 5935 6170 -4 410 260 191 12 chr12 43516011 43516184 -100270271 - MIR SINE MIR -4 258 55 351 0 0 0 chr12 43516718 43516757 -100269698 + (TG)n Simple_repeat Simple_repeat 2 40 0 1692 187 0 7 chr12 43516759 43517042 -100269413 - AluJb SINE Alu -31 281 1 478 207 207 0 chr12 43517049 43517189 -100269266 - L1PB4 LINE L1 -2 6154 5986 249 253 48 24 chr12 43517374 43517457 -100268998 + MER94 DNA DNA 41 125 -9 267 304 38 70 chr12 43518098 43518256 -100268199 + L3 LINE CR1 966 1118 -459 494 340 140 13 chr12 43518410 43518875 -100267580 + L2 LINE L2 1488 2011 -1303 844 102 0 0 chr12 43518877 43518995 -100267460 + AluSc SINE Alu 192 309 0 200 317 0 37 chr12 43519022 43519104 -100267351 + L2 LINE L2 1999 2077 -1237 2088 189 59 4 chr12 43519117 43519589 -100266866 - LTR54B LTR ERV1 0 498 1 360 332 224 19 chr12 43519640 43520059 -100266396 + L2 LINE L2 2200 2704 -610 197 250 53 26 chr12 43520274 43520350 -100266105 + L2 LINE L2 3008 3085 -187 586 265 62 6 chr12 43520452 43520614 -100265841 - MIR SINE MIR 0 262 92 230 322 33 22 chr12 43520747 43520823 -100265632 + L3 LINE CR1 1305 1384 -193 1724 168 3 14 chr12 43520823 43521115 -100265340 + AluJo SINE Alu 1 289 -23 230 322 33 22 chr12 43521115 43521128 -100265327 + L3 LINE CR1 1384 1395 -182 203 208 0 19 chr12 43521253 43521306 -100265149 + T-rich Low_complexity Low_complexity 5 56 0 380 163 245 0 chr12 43521530 43521628 -100264827 + L2 LINE L2 3187 3308 -5 211 271 0 0 chr12 43521705 43521753 -100264702 + L3 LINE CR1 1494 1541 -36 198 103 0 0 chr12 43521799 43521828 -100264627 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 1078 203 77 0 chr12 43522091 43522298 -100264157 + AluJb SINE Alu 87 309 -3 336 122 0 0 chr12 43523331 43523380 -100263075 + MER66A LTR ERV1 289 337 -141 25 0 0 0 chr12 43523380 43523405 -100263050 + AT_rich Low_complexity Low_complexity 1 25 0 30 89 0 0 chr12 43523716 43523795 -100262660 + AT_rich Low_complexity Low_complexity 1 79 0 2045 160 15 0 chr12 43524297 43524640 -100261815 - MER7A DNA MER2_type 0 346 1 1753 170 14 0 chr12 43524787 43525090 -100261365 - AluJb SINE Alu 0 307 1 1738 141 25 21 chr12 43525193 43525477 -100260978 - AluJb SINE Alu -17 295 11 669 130 0 19 chr12 43525563 43525671 -100260784 - FLAM_A SINE Alu -16 126 21 197 33 33 0 chr12 43525765 43525795 -100260660 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1520 178 37 0 chr12 43525846 43526116 -100260339 - AluJo SINE Alu -14 298 19 265 259 170 9 chr12 43528359 43528471 -100257984 - L2 LINE L2 0 3313 3184 388 188 50 0 chr12 43528615 43528695 -100257760 - MER103 DNA DNA -73 93 10 327 311 0 0 chr12 43528708 43528798 -100257657 + L1MC4 LINE L1 6614 6703 -1339 * 329 311 0 0 chr12 43528742 43528832 -100257623 - L1MC4 LINE L1 -1339 6703 6614 565 251 6 6 chr12 43528837 43529016 -100257439 + (TA)n Simple_repeat Simple_repeat 1 179 0 1585 188 27 3 chr12 43529498 43529791 -100256664 - AluJo SINE Alu -12 300 1 807 149 21 57 chr12 43530695 43530836 -100255619 - AluJo SINE Alu -176 136 1 1506 170 60 7 chr12 43532136 43532436 -100254019 - MLT1A1 LTR MaLR -11 354 39 1777 165 0 26 chr12 43532956 43533265 -100253190 + AluJo SINE Alu 1 301 -11 207 0 0 0 chr12 43533629 43533652 -100252803 + (T)n Simple_repeat Simple_repeat 1 23 0 714 178 0 0 chr12 43533913 43534031 -100252424 - FLAM_C SINE Alu -15 118 1 1490 169 12 75 chr12 43535085 43535404 -100251051 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr12 43536836 43536857 -100249598 + AT_rich Low_complexity Low_complexity 1 21 0 576 139 0 0 chr12 43537255 43537341 -100249114 - FRAM/FAM SINE Alu -91 85 1 21 0 0 0 chr12 43537913 43537934 -100248521 + AT_rich Low_complexity Low_complexity 1 21 0 307 258 140 54 chr12 43542040 43542261 -100244194 - L1M2 LINE L1 -5931 918 679 21 0 0 0 chr12 43542346 43542367 -100244088 + GC_rich Low_complexity Low_complexity 1 21 0 320 129 24 35 chr12 43542640 43542725 -100243730 + CT-rich Low_complexity Low_complexity 4 87 0 375 23 0 0 chr12 43542726 43542770 -100243685 + (CCG)n Simple_repeat Simple_repeat 1 44 0 331 318 106 62 chr12 43543260 43543600 -100242855 - L1M2 LINE L1 -5845 1004 650 198 0 0 0 chr12 43543934 43543956 -100242499 + (T)n Simple_repeat Simple_repeat 1 22 0 27 49 0 0 chr12 43544937 43544978 -100241477 + AT_rich Low_complexity Low_complexity 1 41 0 430 114 0 0 chr12 43547018 43547088 -100239367 + L1MA3 LINE L1 6236 6305 0 2168 105 0 0 chr12 43547147 43547465 -100238990 + AluSx SINE Alu 1 318 0 378 0 0 0 chr12 43548479 43548521 -100237934 + (TG)n Simple_repeat Simple_repeat 2 43 0 616 164 9 17 chr12 43548521 43548637 -100237818 - FLAM_C SINE Alu -18 115 1 2363 81 0 3 chr12 43549135 43549432 -100237023 + AluY SINE Alu 1 296 -15 367 160 0 27 chr12 43549836 43549911 -100236544 + MER103 DNA DNA 42 114 -52 225 62 0 0 chr12 43550008 43550040 -100236415 + HSMAR1 DNA Mariner 1256 1287 0 410 230 81 57 chr12 43550409 43550706 -100235749 - L1MC5 LINE L1 -466 7495 7238 290 190 0 17 chr12 43550721 43550779 -100235676 + MER5A DNA MER1_type 128 184 -5 24 0 0 0 chr12 43551068 43551092 -100235363 + AT_rich Low_complexity Low_complexity 1 24 0 2122 128 16 3 chr12 43551365 43551671 -100234784 - AluSx SINE Alu -2 310 1 306 0 0 0 chr12 43551840 43551874 -100234581 + (T)n Simple_repeat Simple_repeat 1 34 0 2202 98 7 33 chr12 43552033 43552339 -100234116 - AluSq SINE Alu -15 298 1 456 32 0 0 chr12 43552499 43552562 -100233893 - AluY SINE Alu -6 306 244 26 30 0 0 chr12 43552818 43552851 -100233604 + AT_rich Low_complexity Low_complexity 1 33 0 2824 230 194 42 chr12 43553632 43554256 -100232199 - L1MC4 LINE L1 -216 7826 7298 1588 173 10 30 chr12 43554256 43554557 -100231898 - AluJb SINE Alu -17 295 1 2824 230 194 42 chr12 43554557 43555221 -100231234 - L1MC4 LINE L1 -744 7298 6342 1530 174 24 7 chr12 43555242 43555530 -100230925 + MER7A DNA MER2_type 1 291 -55 1129 208 78 76 chr12 43555622 43556084 -100230371 - L1MC4 LINE L1 -1925 5883 5421 1949 121 0 56 chr12 43556132 43556438 -100230017 + AluSg SINE Alu 1 289 -21 739 258 13 0 chr12 43556439 43556594 -100229861 - FAM SINE Alu -17 158 2 595 281 86 51 chr12 43556677 43557250 -100229205 - L1MC4 LINE L1 -1488 4658 4066 2008 132 3 7 chr12 43558621 43558909 -100227546 - AluSx SINE Alu -25 287 1 1646 171 10 29 chr12 43559161 43559470 -100226985 - AluJb SINE Alu -9 303 1 590 229 102 6 chr12 43559656 43559822 -100226633 - MIR SINE MIR -5 257 76 2410 54 0 10 chr12 43559835 43560129 -100226326 - AluY SINE Alu -20 291 1 23 0 0 0 chr12 43560277 43560300 -100226155 + AT_rich Low_complexity Low_complexity 1 23 0 230 253 120 13 chr12 43560356 43560431 -100226024 - MIR SINE MIR -56 206 124 14512 128 38 5 chr12 43560969 43561140 -100225315 - Tigger1 DNA MER2_type 0 2418 2254 1473 156 12 111 chr12 43561140 43561474 -100224981 + AluJb SINE Alu 1 301 -11 14512 128 38 5 chr12 43561474 43563644 -100222811 - Tigger1 DNA MER2_type -164 2254 1 885 247 86 16 chr12 43563785 43564028 -100222427 - MIR SINE MIR -1 261 2 771 255 178 34 chr12 43564034 43564618 -100221837 - L2 LINE L2 0 3313 2622 2166 129 18 0 chr12 43564637 43564969 -100221486 - MER7A DNA MER2_type -10 336 1 298 261 33 43 chr12 43564969 43565061 -100221394 - L2 LINE L2 -700 2614 2524 318 331 62 15 chr12 43565360 43565490 -100220965 + L2 LINE L2 3137 3272 0 1524 173 94 7 chr12 43565579 43565856 -100220599 - AluJo SINE Alu -11 301 1 1906 81 3 121 chr12 43566039 43566371 -100220084 + AluSg1 SINE Alu 1 293 -16 689 229 154 18 chr12 43566394 43566621 -100219834 + MIR SINE MIR 5 262 0 1964 121 32 0 chr12 43566663 43566944 -100219511 - AluJo SINE Alu -12 300 11 386 273 165 21 chr12 43566951 43567193 -100219262 + MARNA DNA Mariner 268 544 -42 746 357 27 53 chr12 43567512 43567924 -100218531 + L2 LINE L2 2872 3272 0 2164 118 0 0 chr12 43568969 43569266 -100217189 - AluSx SINE Alu -15 297 1 999 169 0 3 chr12 43569745 43569976 -100216479 + AluJb SINE Alu 1 299 -13 1065 86 132 86 chr12 43571340 43571560 -100214895 - MER30 DNA MER1_type 0 230 1 991 269 138 15 chr12 43571625 43571952 -100214503 - MLT1J LTR MaLR -45 466 100 202 244 0 0 chr12 43572065 43572110 -100214345 + (TA)n Simple_repeat Simple_repeat 2 46 0 581 153 54 18 chr12 43572806 43572917 -100213538 - FLAM_A SINE Alu -18 115 1 444 285 146 16 chr12 43573143 43573389 -100213066 - L1MDa LINE L1 -3201 3339 3062 240 185 0 37 chr12 43573528 43573609 -100212846 + T-rich Low_complexity Low_complexity 1 78 0 24 67 0 0 chr12 43573878 43573923 -100212532 + AT_rich Low_complexity Low_complexity 1 45 0 693 251 6 6 chr12 43573923 43574086 -100212369 - FRAM SINE Alu -3 163 1 255 193 125 38 chr12 43574087 43574191 -100212264 - L1MDa LINE L1 -3929 2611 2499 331 309 54 60 chr12 43574377 43574824 -100211631 - HAL1 LINE L1 -744 1763 1320 5269 150 9 6 chr12 43674851 43676074 -100110381 + L1PA16 LINE L1 4937 6164 -2 930 94 8 0 chr12 43676118 43676246 -100110209 - L1PA10 LINE L1 -13 6155 6027 9970 130 16 7 chr12 43676361 43678012 -100108443 - L1PBa LINE L1 -5073 1790 126 207 191 0 79 chr12 43678239 43678302 -100108153 + T-rich Low_complexity Low_complexity 2 59 0 4011 212 105 40 chr12 43678894 43680130 -100106325 - L1M4 LINE L1 -3136 3246 2092 1409 171 84 7 chr12 43680130 43680261 -100106194 - AluJb SINE Alu -14 298 178 414 0 0 0 chr12 43680261 43680307 -100106148 + (ATG)n Simple_repeat Simple_repeat 2 47 0 1409 171 84 7 chr12 43680307 43680450 -100106005 - AluJb SINE Alu -134 178 3 4011 212 105 40 chr12 43680450 43680935 -100105520 - L1M4 LINE L1 -4290 2092 1640 1669 127 94 0 chr12 43680935 43680960 -100105495 - L1MA2 LINE L1 -4 6300 6279 387 0 0 0 chr12 43680960 43681003 -100105452 + (TA)n Simple_repeat Simple_repeat 1 43 0 1669 127 94 0 chr12 43681003 43681276 -100105179 - L1MA2 LINE L1 -25 6279 5974 4011 212 105 40 chr12 43681276 43681911 -100104544 - L1M4 LINE L1 -4742 1640 777 1987 109 25 21 chr12 43682580 43682884 -100103571 + AluSx SINE Alu 1 305 0 310 314 44 38 chr12 43682928 43683087 -100103368 + L1M4 LINE L1 2676 2835 -3311 1867 96 0 4 chr12 43683148 43683387 -100103068 + AluY SINE Alu 69 306 -5 283 233 17 35 chr12 43683454 43683570 -100102885 + L1M4 LINE L1 2908 3021 -3125 282 273 45 0 chr12 43683600 43683666 -100102789 + L2 LINE L2 3238 3306 -7 289 287 36 31 chr12 43683666 43683861 -100102594 + L1M4 LINE L1 3048 3243 -2903 660 134 0 0 chr12 43683875 43683972 -100102483 + AluSg/x SINE Alu 206 302 -10 203 196 118 0 chr12 43684664 43684715 -100101740 - L2 LINE L2 0 3313 3257 1875 140 45 34 chr12 43684886 43685243 -100101212 - MER46B DNA MER2_type 0 236 1 339 85 0 0 chr12 43685331 43685378 -100101077 + (CA)n Simple_repeat Simple_repeat 2 48 0 1585 198 65 55 chr12 43685719 43685753 -100100702 - Charlie1b DNA MER1_type -2260 501 469 2030 127 7 3 chr12 43685753 43686045 -100100410 + AluSx SINE Alu 1 293 -19 1585 198 65 55 chr12 43686045 43686501 -100099954 - Charlie1b DNA MER1_type -2292 469 6 2141 113 14 3 chr12 43686643 43686936 -100099519 - AluSq SINE Alu -17 296 1 398 328 0 52 chr12 43687168 43687218 -100099237 - MIR SINE MIR -62 146 95 2909 133 79 4 chr12 43687218 43687738 -100098717 - MER89 LTR ERV1 0 559 1 398 328 0 52 chr12 43687738 43687821 -100098634 - MIR SINE MIR -113 95 20 184 375 31 0 chr12 43688727 43688791 -100097664 + MIR SINE MIR 30 95 -113 245 250 68 57 chr12 43688860 43689036 -100097419 - MER20B DNA MER1_type -604 179 2 273 235 0 98 chr12 43689361 43689463 -100096992 - MER77 LTR ERV1 -237 368 277 * 374 250 113 50 chr12 43689430 43689590 -100096865 - MER21B LTR ERV1 -553 310 141 387 227 0 62 chr12 43689621 43689749 -100096706 - MER77 LTR ERV1 -409 196 77 386 300 261 13 chr12 43690012 43690586 -100095869 - L2 LINE L2 -129 3184 2464 995 248 104 74 chr12 43690733 43690971 -100095484 - L1MC5 LINE L1 -51 7910 7680 1681 177 13 13 chr12 43690971 43691270 -100095185 + AluJo SINE Alu 1 299 -13 995 248 104 74 chr12 43691270 43691745 -100094710 - L1MC5 LINE L1 -281 7680 7176 2927 243 113 27 chr12 43692294 43693706 -100092749 + HAL1 LINE L1 975 2507 0 567 315 71 10 chr12 43693825 43694022 -100092433 + L3 LINE CR1 1348 1556 -21 2289 134 51 23 chr12 43694876 43695310 -100091145 - Tigger2 DNA MER2_type 0 2718 2273 413 143 0 14 chr12 43695300 43695370 -100091085 - Tigger2 DNA MER2_type -2649 69 1 * 25 75 0 0 chr12 43697204 43697257 -100089198 + AT_rich Low_complexity Low_complexity 1 53 0 2115 98 0 57 chr12 43697309 43697624 -100088831 - AluSx SINE Alu -15 297 1 1530 184 67 8 chr12 43697747 43698014 -100088441 - AluJo SINE Alu -29 283 1 25 0 0 0 chr12 43699167 43699192 -100087263 + AT_rich Low_complexity Low_complexity 1 25 0 1477 151 128 4 chr12 43700321 43700579 -100085876 - AluJo SINE Alu -12 290 1 913 273 72 14 chr12 43700581 43700940 -100085515 - L1ME3A LINE L1 -288 5865 5486 1252 117 112 0 chr12 43700952 43701149 -100085306 - AluSg/x SINE Alu -9 303 85 302 267 0 0 chr12 43701160 43701274 -100085181 - L1ME3A LINE L1 -688 5465 5352 1419 270 220 52 chr12 43701405 43702615 -100083840 - L2 LINE L2 -290 3023 1615 818 195 130 5 chr12 43702811 43702996 -100083459 + MER6B DNA MER2_type 2 209 -1 336 306 61 13 chr12 43703047 43703276 -100083179 - L1ME3A LINE L1 -2409 3720 3481 384 318 87 34 chr12 43703290 43703549 -100082906 - L1M4c LINE L1 -919 1824 1345 615 249 88 68 chr12 43703575 43704074 -100082381 - L1ME3A LINE L1 -5011 1108 600 2228 127 7 0 chr12 43704273 43704581 -100081874 + AluSx SINE Alu 1 310 -2 323 301 60 60 chr12 43704958 43705157 -100081298 + MLT1J LTR MaLR 97 295 -216 230 267 93 0 chr12 43705278 43705353 -100081102 + MLT1J LTR MaLR 424 505 -6 2017 145 3 0 chr12 43706036 43706332 -100080123 + AluSx SINE Alu 2 298 -14 25 0 0 0 chr12 43706578 43706603 -100079852 + AT_rich Low_complexity Low_complexity 1 25 0 1917 113 23 46 chr12 43707874 43708176 -100078279 - AluSq SINE Alu -18 295 1 287 275 84 49 chr12 43708395 43708537 -100077918 - MIR SINE MIR -66 142 22 594 247 129 0 chr12 43710859 43711037 -100075418 - MER102a DNA MER1_type -11 319 119 1897 146 20 7 chr12 43711334 43711629 -100074826 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr12 43711983 43712010 -100074445 + AT_rich Low_complexity Low_complexity 1 27 0 234 291 35 0 chr12 43712288 43712374 -100074081 + L2 LINE L2 1860 1948 -1366 230 286 119 0 chr12 43712886 43712970 -100073485 + L2 LINE L2 2261 2354 -960 349 335 67 32 chr12 43713075 43713545 -100072910 + L2 LINE L2 2526 3046 -226 339 200 176 0 chr12 43713578 43713663 -100072792 + L2 LINE L2 3158 3257 -15 258 105 0 0 chr12 43713663 43713701 -100072754 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2055 148 0 0 chr12 43716336 43716639 -100069816 + AluSx SINE Alu 1 303 -9 519 258 288 13 chr12 43717378 43717739 -100068716 - L2 LINE L2 -136 3177 2709 240 248 183 22 chr12 43717734 43717871 -100068584 - MIR3 SINE MIR -35 173 15 * 266 277 43 21 chr12 43718559 43718653 -100067802 + MIR SINE MIR 136 231 -31 247 304 161 9 chr12 43718770 43718882 -100067573 - MER5A DNA MER1_type 0 189 61 201 314 129 16 chr12 43718772 43718896 -100067559 + MER5A DNA MER1_type 17 154 -35 * 237 217 0 0 chr12 43719304 43719350 -100067105 + MER5B DNA MER1_type 9 54 -124 206 289 0 0 chr12 43720161 43720213 -100066242 - L2 LINE L2 0 3272 3221 2223 99 10 0 chr12 43720471 43720765 -100065690 - AluSp SINE Alu -16 297 1 1034 200 78 30 chr12 43721700 43722010 -100064445 + MLT1D LTR MaLR 180 595 0 409 287 90 12 chr12 43722283 43722450 -100064005 + MIR SINE MIR 47 226 -36 511 198 99 8 chr12 43724797 43724918 -100061537 + L1MC2 LINE L1 6200 6331 -13 357 294 42 21 chr12 43725712 43725855 -100060600 + MIR SINE MIR 117 262 0 510 239 25 14 chr12 43726171 43726311 -100060144 - MIR SINE MIR -59 203 61 316 327 88 26 chr12 43726588 43726860 -100059595 + MLT1K LTR MaLR 2 290 -298 2253 98 3 0 chr12 43726899 43727205 -100059250 + AluSg SINE Alu 1 307 -3 371 277 113 72 chr12 43727629 43728141 -100058314 - L1ME4a LINE L1 -241 5880 5348 38429 87 14 8 chr12 43728404 43734517 -100051938 - L1PA6 LINE L1 -7 6147 3 2042 117 32 0 chr12 43734526 43734807 -100051648 - AluSx SINE Alu -22 290 1 23 54 0 0 chr12 43734807 43734844 -100051611 + AT_rich Low_complexity Low_complexity 1 37 0 2021 131 10 0 chr12 43735255 43735553 -100050902 - AluSx SINE Alu -11 301 1 740 254 96 21 chr12 43736513 43736753 -100049702 - MIR SINE MIR 0 262 5 309 297 44 11 chr12 43737160 43737251 -100049204 + MIR3 SINE MIR 115 208 0 180 255 21 0 chr12 43737525 43737572 -100048883 + L2 LINE L2 3251 3298 -15 810 202 22 34 chr12 43737867 43738045 -100048410 + MER5B DNA MER1_type 1 176 -2 2132 118 69 39 chr12 43738318 43738682 -100047773 - THE1C LTR MaLR 0 375 1 299 289 127 86 chr12 43739271 43739690 -100046765 - L2 LINE L2 -13 3259 2824 273 338 92 38 chr12 43739859 43740180 -100046275 - L2 LINE L2 -807 2507 2162 312 225 156 56 chr12 43740180 43740303 -100046152 + MER5B DNA MER1_type 3 147 -31 222 62 0 0 chr12 43740303 43740335 -100046120 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 312 225 156 56 chr12 43740335 43740371 -100046084 + MER5B DNA MER1_type 147 178 0 273 338 92 38 chr12 43740371 43740419 -100046036 - L2 LINE L2 -1152 2162 2118 219 285 171 44 chr12 43741088 43741316 -100045139 + L2 LINE L2 3056 3312 -1 14840 125 46 8 chr12 43741478 43743789 -100042666 + Tigger1 DNA MER2_type 20 2418 0 263 300 22 0 chr12 43744345 43744435 -100042020 + MIR SINE MIR 64 155 -107 2056 120 25 0 chr12 43745417 43745701 -100040754 - AluSx SINE Alu -21 291 1 777 234 125 76 chr12 43747714 43748137 -100038318 + MLT1H LTR MaLR 104 547 -2 43488 35 24 1 chr12 43749527 43755546 -100030909 - L1PA3 LINE L1 0 6155 1 370 250 16 48 chr12 43757401 43757525 -100028930 + MIR SINE MIR 59 178 -84 1075 164 55 0 chr12 43758093 43758276 -100028179 + MER46A DNA MER2_type 44 236 0 22 35 0 0 chr12 43758717 43758746 -100027709 + AT_rich Low_complexity Low_complexity 1 29 0 787 266 75 76 chr12 43758748 43759111 -100027344 + L1M4 LINE L1 3918 4282 -1864 2287 99 0 0 chr12 43759111 43759419 -100027036 + AluSx SINE Alu 1 308 0 787 266 75 76 chr12 43759419 43759723 -100026732 + L1M4 LINE L1 4282 4585 -1561 429 282 95 28 chr12 43759789 43760286 -100026169 + L1M4 LINE L1 4789 5318 -828 5210 226 76 59 chr12 43760419 43762414 -100024041 + L1MB7 LINE L1 16 1974 -4672 2304 122 30 25 chr12 43762414 43762776 -100023679 - THE1B LTR MaLR 0 364 1 5210 226 76 59 chr12 43762776 43762808 -100023647 + L1MB7 LINE L1 1974 2004 -4642 2154 112 0 7 chr12 43762808 43763111 -100023344 - AluSg SINE Alu -9 301 1 1188 177 73 5 chr12 43763111 43763331 -100023124 + MER46A DNA MER2_type 1 235 -1 5210 226 76 59 chr12 43763331 43763917 -100022538 + L1MB7 LINE L1 2003 2703 -3943 4922 218 71 19 chr12 43763890 43765342 -100021113 + L1MB7 LINE L1 3630 5156 -1488 * 2287 152 126 10 chr12 43766075 43766576 -100019879 - MER89 LTR ERV1 0 559 1 22 56 0 0 chr12 43767143 43767179 -100019276 + AT_rich Low_complexity Low_complexity 1 36 0 1684 163 48 56 chr12 43770803 43771195 -100015260 - MLT1B LTR MaLR -1 389 1 2202 99 0 7 chr12 43771217 43771509 -100014946 + AluSx SINE Alu 1 290 -22 398 245 95 41 chr12 43771779 43771926 -100014529 - L1MC4a LINE L1 -1952 5856 5702 2084 134 3 0 chr12 43771950 43772255 -100014200 + AluSx SINE Alu 3 308 0 18711 55 14 9 chr12 43774775 43777328 -100009127 - L1P LINE L1 -842 5304 2740 4199 188 77 10 chr12 43777614 43778142 -100008313 + L1MB7 LINE L1 5153 5644 -1038 1279 203 79 48 chr12 43778142 43778496 -100007959 + MLT1A1 LTR MaLR 1 365 0 4199 188 77 10 chr12 43778496 43779359 -100007096 + L1MB7 LINE L1 5644 6641 -41 512 95 21 56 chr12 43779414 43779499 -100006956 + L1MB7 LINE L1 5921 6007 -177 302 203 0 0 chr12 43779499 43779573 -100006882 + L1MB7 LINE L1 6111 6184 0 512 95 21 56 chr12 43779573 43779585 -100006870 + L1MB7 LINE L1 6007 6184 0 2243 77 3 13 chr12 43779586 43779884 -100006571 + AluSx SINE Alu 3 297 -15 25 75 0 0 chr12 43779936 43779989 -100006466 + AT_rich Low_complexity Low_complexity 1 53 0 437 143 0 14 chr12 43781824 43781894 -100004561 + Tigger2 DNA MER2_type 1 69 -2649 * 2441 134 51 23 chr12 43781884 43782318 -100004137 + Tigger2 DNA MER2_type 2273 2718 0 566 315 71 10 chr12 43783172 43783369 -100003086 - L3 LINE CR1 -21 1556 1348 3295 251 108 28 chr12 43783488 43784989 -100001466 - HAL1 LINE L1 0 2507 887 1190 253 100 76 chr12 43785352 43785924 -100000531 + L1MC5 LINE L1 7081 7679 -282 1650 177 13 13 chr12 43785924 43786223 -100000232 - AluJo SINE Alu -13 299 1 1190 253 100 76 chr12 43786223 43786461 -99999994 + L1MC5 LINE L1 7679 7910 -51 381 299 261 13 chr12 43786608 43787182 -99999273 + L2 LINE L2 2464 3184 -129 420 230 1 61 chr12 43787431 43787569 -99998886 + MER77 LTR ERV1 25 196 -409 463 238 115 70 chr12 43787600 43787840 -99998615 + MER21B LTR ERV1 141 379 -226 297 250 68 57 chr12 43788154 43788330 -99998125 + MER20B DNA MER1_type 2 179 -604 756 254 78 20 chr12 43789540 43789784 -99996671 - MIR SINE MIR -3 259 2 197 254 36 0 chr12 43789859 43789914 -99996541 - L2 LINE L2 -64 3249 3193 271 240 88 32 chr12 43791013 43791138 -99995317 + L1ME4a LINE L1 5770 5901 -220 1742 167 48 58 chr12 43792474 43792869 -99993586 + MSTD LTR MaLR 1 391 -5 468 332 37 16 chr12 43792871 43793061 -99993394 + MIR SINE MIR 26 219 -43 217 263 18 0 chr12 43793492 43793549 -99992906 - MIR SINE MIR -21 241 184 1593 138 232 9 chr12 43793985 43794334 -99992121 + MSTA LTR MaLR 2 428 0 261 284 15 0 chr12 43794375 43794442 -99992013 - L2 LINE L2 0 3272 3205 738 277 119 45 chr12 43794566 43795079 -99991376 + LTR67 LTR ERVL 3 553 -4 249 321 24 0 chr12 43795896 43795980 -99990475 + L2 LINE L2 3186 3271 -1 548 293 103 17 chr12 43796525 43796757 -99989698 + MIR SINE MIR 9 260 -2 594 255 143 31 chr12 43797193 43797452 -99989003 - L1MC4a LINE L1 -1973 5835 5548 262 208 38 0 chr12 43797961 43798014 -99988441 + L2 LINE L2 3218 3272 0 473 252 27 41 chr12 43799302 43799449 -99987006 - MER5A DNA MER1_type -1 188 44 25 31 0 0 chr12 43800749 43800781 -99985674 + AT_rich Low_complexity Low_complexity 1 32 0 1460 136 87 19 chr12 43800785 43801094 -99985361 - L1MA8 LINE L1 -42 6249 5920 4034 114 102 40 chr12 43801124 43802229 -99984226 - Tigger3b DNA MER2_type 0 1232 3 849 298 62 11 chr12 43802370 43802803 -99983652 + L1M4 LINE L1 3838 4292 -1854 1178 168 103 0 chr12 43802945 43803159 -99983296 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr12 43803589 43803617 -99982838 + AT_rich Low_complexity Low_complexity 1 28 0 1043 255 220 28 chr12 43803914 43804424 -99982031 + MLT1L LTR MaLR 1 608 -7 483 212 73 0 chr12 43805559 43805696 -99980759 - MER104 DNA Tc2 -4 176 30 537 301 77 61 chr12 43805769 43806095 -99980360 + MLT1J1 LTR MaLR 109 439 -7 198 0 0 0 chr12 43806334 43806356 -99980099 + (TG)n Simple_repeat Simple_repeat 1 22 0 242 54 0 27 chr12 43806356 43806393 -99980062 + (GA)n Simple_repeat Simple_repeat 2 37 0 329 297 149 36 chr12 43806679 43806901 -99979554 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 43808895 43808916 -99977539 + AT_rich Low_complexity Low_complexity 1 21 0 258 240 82 41 chr12 43810820 43810966 -99975489 - L1ME4a LINE L1 0 6121 5970 472 276 108 22 chr12 43811095 43811363 -99975092 - L1ME4a LINE L1 -331 5790 5500 2408 74 17 0 chr12 43814434 43814731 -99971724 + AluSp SINE Alu 1 302 -11 576 283 48 39 chr12 43814894 43815124 -99971331 + MIR SINE MIR 20 251 -11 254 322 51 34 chr12 43816215 43816451 -99970004 + L2 LINE L2 2834 3073 -199 4609 192 44 10 chr12 43816517 43817579 -99968876 + Charlie1a DNA MER1_type 56 1153 -302 24727 40 2 1 chr12 43817581 43821530 -99964925 + L1PA5 LINE L1 2184 6139 -15 207 69 0 0 chr12 43821530 43821559 -99964896 + (TA)n Simple_repeat Simple_repeat 2 30 0 540 150 223 62 chr12 43821562 43821835 -99964620 + Charlie1a DNA MER1_type 1138 1454 -1 289 323 111 51 chr12 43822188 43822522 -99963933 + L2 LINE L2 2918 3271 -1 367 320 193 34 chr12 43822601 43823186 -99963269 - L2 LINE L2 -582 2732 2055 761 222 56 10 chr12 43823373 43823571 -99962884 - MER3 DNA MER1_type -2 207 1 875 147 38 38 chr12 43823778 43823962 -99962493 + MLT2C1 LTR ERVL 1 184 -213 311 278 11 11 chr12 43824115 43824205 -99962250 + L1MC4 LINE L1 6614 6703 -1339 748 152 36 0 chr12 43824208 43824320 -99962135 - AluJo SINE Alu -176 136 21 322 359 72 18 chr12 43824348 43824515 -99961940 + MER5B DNA MER1_type 1 176 -2 315 234 101 55 chr12 43825276 43825437 -99961018 - MIR3 SINE MIR -67 141 12 412 345 151 19 chr12 43827129 43827448 -99959007 - L3 LINE CR1 -416 1161 801 526 323 127 23 chr12 43827450 43827797 -99958658 - L3 LINE CR1 -983 594 212 500 338 134 44 chr12 43829181 43829994 -99956461 + L2 LINE L2 421 1306 -2008 4719 255 124 27 chr12 43829998 43830620 -99955835 + L2 LINE L2 1122 1683 -1630 201 39 0 0 chr12 43830620 43830646 -99955809 + (CA)n Simple_repeat Simple_repeat 2 27 0 4719 255 124 27 chr12 43830646 43831966 -99954489 + L2 LINE L2 1683 3265 -48 1879 142 0 75 chr12 43837025 43837357 -99949098 - AluJo SINE Alu -5 307 1 1383 144 69 3 chr12 43837365 43837656 -99948799 - MER33 DNA MER1_type -8 316 7 230 250 42 0 chr12 43838039 43838111 -99948344 + L1MC5 LINE L1 7502 7576 -385 1646 176 34 20 chr12 43838189 43838484 -99947971 + AluJb SINE Alu 1 299 -13 2152 123 7 10 chr12 43838786 43839096 -99947359 - AluSg SINE Alu -1 309 1 298 293 89 75 chr12 43841511 43841691 -99944764 + MIR SINE MIR 11 191 -71 1643 139 19 12 chr12 43842558 43842816 -99943639 + AluSx SINE Alu 53 312 0 1817 137 7 27 chr12 43842826 43843125 -99943330 + AluSx SINE Alu 20 312 0 330 326 87 37 chr12 43843502 43843744 -99942711 + MIR SINE MIR 8 261 -1 25 0 0 0 chr12 43843847 43843872 -99942583 + AT_rich Low_complexity Low_complexity 1 25 0 212 356 35 9 chr12 43844393 43844508 -99941947 + L2 LINE L2 2368 2485 -829 2217 64 10 73 chr12 43844784 43845097 -99941358 + AluY SINE Alu 1 293 -18 445 306 40 8 chr12 43845311 43845435 -99941020 + L2 LINE L2 3127 3254 -18 3961 178 40 38 chr12 43846172 43847297 -99939158 - L1MB4 LINE L1 -3 6177 5049 1422 66 0 0 chr12 43847297 43847464 -99938991 - AluSp SINE Alu -7 306 140 1520 210 50 9 chr12 43847472 43847895 -99938560 - L1MB4 LINE L1 -1088 5058 4619 806 210 30 99 chr12 43848409 43848771 -99937684 - MER46C DNA MER2_type -1 337 1 259 273 13 0 chr12 43849129 43849206 -99937249 + L1MB3 LINE L1 5539 5616 -505 1941 128 31 7 chr12 43849206 43849496 -99936959 + AluSx SINE Alu 1 297 -15 28 0 0 0 chr12 43849497 43849525 -99936930 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 43849610 43849631 -99936824 + AT_rich Low_complexity Low_complexity 1 21 0 1601 71 13 22 chr12 43849703 43849927 -99936528 + AluY SINE Alu 88 309 -2 2533 124 92 34 chr12 43849941 43850442 -99936013 + L1MB3 LINE L1 5643 6172 -11 456 280 74 53 chr12 43850882 43851125 -99935330 + L2 LINE L2 2322 2569 -745 692 282 58 54 chr12 43851138 43851397 -99935058 - MIR SINE MIR -1 261 2 452 264 206 32 chr12 43851412 43851689 -99934766 + L2 LINE L2 2987 3311 -2 721 298 44 18 chr12 43851715 43851943 -99934512 + MIR SINE MIR 26 259 -3 631 175 10 0 chr12 43852386 43852489 -99933966 + FLAM_A SINE Alu 19 122 -20 2226 74 47 3 chr12 43852909 43853205 -99933250 - AluSc SINE Alu 0 309 1 2907 140 81 41 chr12 43854109 43854737 -99931718 + MER39B LTR ERV1 1 653 0 229 308 116 55 chr12 43854757 43854903 -99931552 - L2 LINE L2 -654 2660 2506 254 312 26 0 chr12 43855121 43855198 -99931257 - L2 LINE L2 0 3313 3235 338 226 97 77 chr12 43855763 43855918 -99930537 + L1ME4a LINE L1 5963 6120 -1 1112 308 136 32 chr12 43856054 43856870 -99929585 + L2 LINE L2 1858 2758 -556 2267 169 44 5 chr12 43856927 43857335 -99929120 + MSTB LTR MaLR 1 424 -2 339 294 42 25 chr12 43857382 43857501 -99928954 + L2 LINE L2 3193 3313 0 180 111 0 0 chr12 43857584 43857611 -99928844 + (CA)n Simple_repeat Simple_repeat 1 27 0 241 262 41 8 chr12 43857722 43857844 -99928611 + (TA)n Simple_repeat Simple_repeat 2 127 0 219 319 160 0 chr12 43858908 43859027 -99927428 - MIR3 SINE MIR -31 177 40 4545 245 133 67 chr12 43859179 43860410 -99926045 + HAL1 LINE L1 10 1158 -1349 1498 161 20 31 chr12 43860410 43860702 -99925753 + AluJo SINE Alu 1 289 -23 4545 245 133 67 chr12 43860702 43861813 -99924642 + HAL1 LINE L1 1158 2507 0 577 299 128 31 chr12 43861892 43862313 -99924142 - L2 LINE L2 -28 3285 2824 1084 289 146 48 chr12 43862354 43863159 -99923296 - L2 LINE L2 -657 2657 1758 2325 101 3 0 chr12 43863159 43863467 -99922988 + AluSg SINE Alu 1 309 -1 1084 289 146 48 chr12 43863467 43863536 -99922919 - L2 LINE L2 -1556 1758 1697 1397 293 166 14 chr12 43863614 43864704 -99921751 - L2 LINE L2 -98 3215 1959 669 157 0 19 chr12 43865083 43865191 -99921264 - MIR SINE MIR -110 152 47 445 113 183 26 chr12 43865322 43865364 -99921091 - L1MA9 LINE L1 0 6312 6271 3551 152 37 13 chr12 43865364 43866019 -99920436 - L1MA9 LINE L1 -44 6122 5485 183 80 0 0 chr12 43866455 43866480 -99919975 + (A)n Simple_repeat Simple_repeat 1 25 0 385 155 42 0 chr12 43867192 43867263 -99919192 - MADE1 DNA Mariner -1 79 6 1619 128 128 8 chr12 43867647 43867905 -99918550 + AluSg1 SINE Alu 1 289 -20 234 308 0 0 chr12 43868316 43868381 -99918074 + MIR SINE MIR 87 151 -57 445 257 138 20 chr12 43868396 43868548 -99917907 + MER5B DNA MER1_type 9 178 0 696 214 54 6 chr12 43868586 43868754 -99917701 + MER5B DNA MER1_type 3 178 0 2085 134 3 0 chr12 43870121 43870426 -99916029 - AluSx SINE Alu 0 308 3 422 245 95 41 chr12 43870450 43870597 -99915858 + L1MC4a LINE L1 5702 5856 -1952 2207 99 0 7 chr12 43870867 43871159 -99915296 - AluSx SINE Alu -22 290 1 1954 151 51 54 chr12 43871181 43871572 -99914883 + MLT1B LTR MaLR 1 390 0 342 0 0 0 chr12 43871823 43871861 -99914594 + (CA)n Simple_repeat Simple_repeat 2 39 0 1219 173 5 5 chr12 43871864 43872066 -99914389 - AluJo SINE Alu -24 288 87 22 88 0 0 chr12 43872319 43872376 -99914079 + AT_rich Low_complexity Low_complexity 1 57 0 215 119 48 24 chr12 43872724 43872766 -99913689 + L2 LINE L2 3241 3283 -30 408 279 57 14 chr12 43873058 43873198 -99913257 + MIR SINE MIR 117 262 0 226 356 0 50 chr12 43874537 43874697 -99911758 + MIR3 SINE MIR 38 189 -19 1295 197 48 48 chr12 43875155 43875450 -99911005 + AluJo SINE Alu 1 295 -17 521 232 165 75 chr12 43875775 43875923 -99910532 + L1ME4a LINE L1 5698 5831 -290 951 69 14 62 chr12 43875923 43875943 -99910512 + L1MB4 LINE L1 6042 6061 -119 2448 66 3 3 chr12 43875943 43876245 -99910210 + AluSp SINE Alu 1 302 -11 951 69 14 62 chr12 43876245 43876368 -99910087 + L1MB4 LINE L1 6061 6178 -2 521 232 165 75 chr12 43876368 43876607 -99909848 + L1ME4a LINE L1 5831 6120 -1 1488 184 39 23 chr12 43877549 43877673 -99908782 + AluJo SINE Alu 3 123 -189 218 0 95 0 chr12 43877673 43877715 -99908740 + A-rich Low_complexity Low_complexity 2 47 0 1488 184 39 23 chr12 43877715 43877895 -99908560 + AluJo SINE Alu 123 312 0 227 252 19 58 chr12 43879238 43879341 -99907114 - Charlie4 DNA MER1_type -4 1957 1859 196 343 41 0 chr12 43879839 43879912 -99906543 - L2 LINE L2 -90 3182 3107 226 274 147 100 chr12 43880405 43880595 -99905860 - MIR SINE MIR -17 245 47 22 70 0 0 chr12 43881855 43881898 -99904557 + AT_rich Low_complexity Low_complexity 1 43 0 2052 108 7 16 chr12 43882543 43882848 -99903607 + AluSx SINE Alu 1 302 -10 1494 83 39 15 chr12 43883159 43883364 -99903091 - AluSc SINE Alu -16 293 84 2364 84 0 0 chr12 43884492 43884776 -99901679 - AluSc SINE Alu -21 288 5 271 221 39 39 chr12 43884893 43884970 -99901485 - MIR3 SINE MIR -9 199 123 1151 262 172 11 chr12 43886919 43887362 -99899093 + MLT1H1 LTR MaLR 36 549 -6 516 291 88 0 chr12 43887369 43887517 -99898938 - MIR3 SINE MIR -28 180 20 816 181 57 28 chr12 43887570 43887747 -99898708 - AluJb SINE Alu -1 311 130 671 193 64 0 chr12 43887776 43887885 -99898570 + FLAM_A SINE Alu 1 116 -17 180 0 0 0 chr12 43887885 43887905 -99898550 + (T)n Simple_repeat Simple_repeat 1 20 0 1641 178 0 32 chr12 43887964 43888273 -99898182 + AluJo SINE Alu 1 299 -13 213 235 76 50 chr12 43889541 43889660 -99896795 - MIR SINE MIR -46 216 95 1955 128 49 0 chr12 43889950 43890238 -99896217 + AluSg SINE Alu 2 303 -7 219 265 206 0 chr12 43890372 43890440 -99896015 + MIR SINE MIR 111 192 -70 1494 193 50 63 chr12 43890753 43891132 -99895323 + MLT1A2 LTR MaLR 1 374 0 512 307 62 0 chr12 43891164 43891343 -99895112 + MIR SINE MIR 46 235 -27 2237 86 21 3 chr12 43891441 43891732 -99894723 + AluSx SINE Alu 2 297 -15 1205 126 0 0 chr12 43891733 43891907 -99894548 + AluSg/x SINE Alu 132 305 -7 283 318 56 24 chr12 43892942 43893068 -99893387 - MIR SINE MIR -101 161 32 29 47 0 0 chr12 43893296 43893339 -99893116 + AT_rich Low_complexity Low_complexity 1 43 0 2289 106 0 7 chr12 43894817 43895120 -99891335 + AluSq SINE Alu 1 301 -12 1830 161 0 14 chr12 43895342 43895634 -99890821 - AluJo SINE Alu -24 288 1 38135 87 12 15 chr12 43895961 43900216 -99886239 + L1PA6 LINE L1 11 4241 -1913 2371 103 0 0 chr12 43900216 43900527 -99885928 + AluSx SINE Alu 1 311 -1 38135 87 12 15 chr12 43900527 43902431 -99884024 + L1PA6 LINE L1 4241 6149 -5 794 212 149 40 chr12 43904723 43905025 -99881430 + L1ME2 LINE L1 5826 6160 -4 467 384 14 0 chr12 43906283 43906429 -99880026 + L2 LINE L2 3125 3272 0 1462 162 4 0 chr12 43907544 43907772 -99878683 - AluJb SINE Alu -14 298 70 204 135 67 34 chr12 43908170 43908259 -99878196 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 186 224 30 45 chr12 43908288 43908355 -99878100 - MIR SINE MIR -111 151 86 275 317 231 0 chr12 43908419 43908523 -99877932 - L2 LINE L2 -8 3264 3137 360 308 50 68 chr12 43908662 43908883 -99877572 - MIR SINE MIR -15 247 31 2441 77 0 10 chr12 43908979 43909291 -99877164 + AluSc SINE Alu 1 309 0 1410 166 25 65 chr12 43910228 43910553 -99875902 + AluJo SINE Alu 1 312 0 2156 83 0 7 chr12 43911411 43911687 -99874768 + AluSx SINE Alu 35 308 -4 21 36 0 0 chr12 43911689 43911717 -99874738 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 43911793 43911827 -99874628 + AT_rich Low_complexity Low_complexity 1 34 0 2194 85 0 3 chr12 43912890 43913172 -99873283 + AluY SINE Alu 13 293 -18 191 309 0 44 chr12 43913197 43913265 -99873190 - L2 LINE L2 -20 3252 3188 1599 197 24 0 chr12 43913464 43913758 -99872697 - AluJo SINE Alu -11 301 1 193 164 18 18 chr12 43914238 43914293 -99872162 + (TA)n Simple_repeat Simple_repeat 1 55 0 324 248 137 26 chr12 43914768 43914885 -99871570 - L2 LINE L2 0 3313 3184 3629 160 68 120 chr12 43915196 43916152 -99870303 - MER21A LTR ERV1 -25 906 1 2020 98 19 0 chr12 43916210 43916475 -99869980 + AluSq SINE Alu 1 270 -43 2245 99 3 3 chr12 43916486 43916789 -99869666 + AluY SINE Alu 1 303 -8 347 367 17 17 chr12 43917033 43917213 -99869242 + L2 LINE L2 2654 2833 -481 1587 210 26 23 chr12 43917384 43917732 -99868723 - MER21B LTR ERV1 -4 859 511 * 1918 173 13 6 chr12 43917731 43918043 -99868412 - MER21B LTR ERV1 -549 314 1 1735 162 19 32 chr12 43919023 43919338 -99867117 + AluJb SINE Alu 1 311 -1 869 197 13 13 chr12 43919563 43919715 -99866740 + FRAM SINE Alu 1 152 -24 1041 170 27 5 chr12 43920094 43920282 -99866173 + AluJb SINE Alu 119 310 -2 763 191 0 35 chr12 43923739 43923880 -99862575 - AluJo SINE Alu -138 174 39 668 299 109 0 chr12 43924230 43924451 -99862004 - MIR SINE MIR -5 257 13 2421 67 0 0 chr12 43924568 43924867 -99861588 - AluY SINE Alu -12 299 1 209 327 115 0 chr12 43925372 43925485 -99860970 + L2 LINE L2 2094 2219 -1095 434 250 0 11 chr12 43925492 43925584 -99860871 + MER45 DNA AcHobo 1 91 -862 3303 55 33 0 chr12 43925585 43925984 -99860471 + L1PA10 LINE L1 5744 6155 -13 7276 171 18 32 chr12 43926026 43927478 -99858977 - L1PA16 LINE L1 0 6166 4694 430 31 31 0 chr12 43927478 43927542 -99858913 + (TTTTA)n Simple_repeat Simple_repeat 3 68 0 2173 113 0 0 chr12 43927545 43927828 -99858627 - AluSx SINE Alu -29 283 1 7276 171 18 32 chr12 43927828 43928198 -99858257 - L1PA16 LINE L1 -1474 4692 4318 1922 151 10 10 chr12 43928198 43928509 -99857946 - AluJb SINE Alu -1 311 1 7276 171 18 32 chr12 43928509 43929136 -99857319 - L1PA16 LINE L1 -1848 4318 3756 896 217 157 23 chr12 43929151 43929451 -99857004 - MLT1F LTR MaLR -202 340 1 1971 123 4 0 chr12 43929535 43929812 -99856643 + AluSx SINE Alu 26 303 -9 1265 272 73 27 chr12 43929816 43930223 -99856232 - L2 LINE L2 -14 3299 2861 1697 221 52 29 chr12 43930223 43930448 -99856007 - MSTD LTR MaLR 0 396 157 1835 122 47 4 chr12 43930448 43930726 -99855729 + AluSg SINE Alu 1 290 -20 1697 221 52 29 chr12 43930726 43930885 -99855570 - MSTD LTR MaLR -239 157 3 1265 272 73 27 chr12 43930885 43931162 -99855293 - L2 LINE L2 -452 2861 2598 2297 108 0 0 chr12 43931163 43931458 -99854997 + AluSx SINE Alu 1 295 -17 183 80 0 0 chr12 43931527 43931552 -99854903 + (TA)n Simple_repeat Simple_repeat 2 26 0 328 231 28 65 chr12 43931560 43931668 -99854787 + L1MC4 LINE L1 6600 6703 -1339 593 73 6 79 chr12 43931668 43931994 -99854461 + (TA)n Simple_repeat Simple_repeat 1 302 0 1444 233 107 101 chr12 43932000 43932630 -99853825 - L2 LINE L2 -734 2580 1942 2429 96 0 3 chr12 43932630 43932943 -99853512 - AluSq SINE Alu -1 312 1 1444 233 107 101 chr12 43932943 43933105 -99853350 - L2 LINE L2 -1372 1942 1783 1526 238 67 12 chr12 43933112 43933646 -99852809 + L2 LINE L2 2265 2789 -525 415 336 64 16 chr12 43933675 43933800 -99852655 + MER91A DNA MER1_type 1 131 -65 644 277 22 30 chr12 43933837 43934068 -99852387 + L2 LINE L2 3077 3305 -8 445 346 17 0 chr12 43934129 43934308 -99852147 - L2 LINE L2 -1668 1646 1465 687 259 185 62 chr12 43934310 43934942 -99851513 - L1MC4 LINE L1 -2 8040 7331 353 234 0 0 chr12 43934943 43935007 -99851448 - MIR SINE MIR -197 65 2 380 297 26 26 chr12 43935172 43935327 -99851128 - ERVL LTR ERVL -3116 2648 2494 2376 76 0 26 chr12 43936180 43936484 -99849971 + AluSc SINE Alu 1 296 -13 440 200 0 0 chr12 43936723 43936798 -99849657 + MER58 DNA MER1_type 2346 2420 0 1723 137 67 7 chr12 43937932 43938232 -99848223 - L1MB2 LINE L1 -2 6169 5852 1024 264 211 14 chr12 43938232 43938668 -99847787 - L2 LINE L2 -1880 1434 913 261 373 127 0 chr12 43938665 43938807 -99847648 + L2 LINE L2 2596 2755 -559 * 327 338 34 20 chr12 43938935 43939083 -99847372 + L2 LINE L2 2915 3064 -208 1353 178 139 8 chr12 43939274 43939411 -99847044 - AluJo SINE Alu -19 293 175 252 0 0 0 chr12 43939411 43939439 -99847016 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1353 178 139 8 chr12 43939439 43939560 -99846895 - AluJo SINE Alu -137 175 1 184 273 114 23 chr12 43939635 43939723 -99846732 + L2 LINE L2 1979 2074 -1240 25 0 0 0 chr12 43939758 43939783 -99846672 + AT_rich Low_complexity Low_complexity 1 25 0 318 114 0 0 chr12 43939783 43939827 -99846628 - Alu SINE Alu -258 44 1 1246 197 121 155 chr12 43940136 43940540 -99845915 + L1MD3 LINE L1 6525 6941 -1054 1021 138 0 52 chr12 43940540 43940714 -99845741 + AluJo SINE Alu 40 204 -108 1246 197 121 155 chr12 43940714 43941545 -99844910 + L1MD3 LINE L1 6941 7984 -11 488 298 272 21 chr12 43941624 43942003 -99844452 + L2 LINE L2 2819 3292 -21 2227 91 7 3 chr12 43942014 43942311 -99844144 + AluSp SINE Alu 1 298 -15 417 239 152 0 chr12 43942473 43942611 -99843844 - MER103 DNA DNA -7 159 1 2083 95 48 17 chr12 43942728 43943022 -99843433 - AluSx SINE Alu -9 303 1 1496 165 81 133 chr12 43943112 43943609 -99842846 - LTR45B LTR ERV1 0 489 19 2333 105 3 9 chr12 43944110 43944425 -99842030 + AluSp SINE Alu 1 313 0 2352 97 0 0 chr12 43944728 43945028 -99841427 - AluSc SINE Alu -9 300 1 23 54 0 0 chr12 43945596 43945633 -99840822 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr12 43945812 43945837 -99840618 + AT_rich Low_complexity Low_complexity 1 25 0 2461 85 0 19 chr12 43946583 43946902 -99839553 + AluSq SINE Alu 1 313 0 307 279 108 10 chr12 43946949 43947073 -99839382 + MIR SINE MIR 38 171 -78 350 245 167 0 chr12 43947110 43947212 -99839243 - L2 LINE L2 -6 3266 3148 235 198 12 81 chr12 43947214 43947300 -99839155 - MIR SINE MIR -10 252 173 395 172 0 0 chr12 43947370 43947434 -99839021 - L2 LINE L2 -5 3308 3245 334 200 133 29 chr12 43947502 43947607 -99838848 - MIR SINE MIR -70 192 77 630 284 59 77 chr12 43947614 43948097 -99838358 - MLT1J LTR MaLR -8 442 1 189 275 0 7 chr12 43948097 43948154 -99838301 - MIR SINE MIR -126 82 27 294 130 14 29 chr12 43948468 43948537 -99837918 + A-rich Low_complexity Low_complexity 3 70 0 711 149 0 0 chr12 43948537 43948658 -99837797 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 772 190 0 36 chr12 43948925 43949062 -99837393 - FLAM_A SINE Alu -1 132 1 839 108 0 0 chr12 43949461 43949572 -99836883 + AluJb SINE Alu 179 289 -23 2079 142 7 3 chr12 43949616 43949926 -99836529 - AluSx SINE Alu -1 311 1 1819 157 48 3 chr12 43950123 43950417 -99836038 - AluJo SINE Alu -5 307 1 263 345 22 61 chr12 43950652 43950881 -99835574 + L2 LINE L2 2469 2688 -626 410 336 16 0 chr12 43951072 43951197 -99835258 + L2 LINE L2 2550 2676 -638 322 64 0 218 chr12 43951197 43951221 -99835234 + HY5 scRNA scRNA 1 29 -55 2178 108 0 0 chr12 43951221 43951543 -99834912 - AluSx SINE Alu 0 326 5 322 64 0 218 chr12 43951543 43951595 -99834860 + HY5 scRNA scRNA 29 61 -23 989 251 94 79 chr12 43951684 43951864 -99834591 + MLT1H1 LTR MaLR 69 245 -310 1614 102 36 13 chr12 43951864 43952089 -99834366 - MER30 DNA MER1_type 0 230 1 989 251 94 79 chr12 43952089 43952387 -99834068 + MLT1H1 LTR MaLR 245 554 -1 307 176 14 54 chr12 43952413 43952487 -99833968 + L2 LINE L2 2783 2853 -461 1887 161 10 0 chr12 43952608 43952912 -99833543 - AluSx SINE Alu -2 310 4 188 287 51 57 chr12 43952932 43953089 -99833366 + L2 LINE L2 3079 3234 -79 869 195 7 0 chr12 43953093 43953247 -99833208 + MER69A DNA AcHobo 1 155 -22 1080 191 27 113 chr12 43953247 43953362 -99833093 - MER67B LTR ERV1 0 661 538 2108 125 3 0 chr12 43953362 43953658 -99832797 - AluSx SINE Alu -1 311 15 1080 191 27 113 chr12 43953658 43953877 -99832578 - MER67B LTR ERV1 -123 538 356 203 361 78 23 chr12 43953891 43954110 -99832345 + L2 LINE L2 2694 2924 -390 22 35 0 0 chr12 43954860 43954889 -99831566 + AT_rich Low_complexity Low_complexity 1 29 0 305 362 75 5 chr12 43955451 43955639 -99830816 + L3b LINE CR1 1286 1486 -97 2328 100 0 7 chr12 43956342 43956643 -99829812 + AluSx SINE Alu 1 299 -13 687 293 49 9 chr12 43956646 43956871 -99829584 + MIR SINE MIR 29 262 0 1937 125 10 42 chr12 43957746 43957890 -99828565 + AluSx SINE Alu 1 148 -164 2118 98 0 4 chr12 43957890 43958166 -99828289 + AluSc SINE Alu 27 301 -8 1937 125 10 42 chr12 43958166 43958334 -99828121 + AluSx SINE Alu 148 303 -9 2016 142 4 0 chr12 43958899 43959232 -99827223 - AluSx SINE Alu 0 334 1 4376 223 32 52 chr12 43959382 43959867 -99826588 - L1M4c LINE L1 -4223 2626 2133 2129 131 6 6 chr12 43959867 43960179 -99826276 - AluSx SINE Alu 0 312 1 4376 223 32 52 chr12 43960179 43961584 -99824871 - L1M4c LINE L1 -4716 2133 894 264 104 45 30 chr12 43961592 43961659 -99824796 + CT-rich Low_complexity Low_complexity 4 71 0 189 107 0 0 chr12 43962203 43962231 -99824224 + (T)n Simple_repeat Simple_repeat 1 28 0 4735 73 39 3 chr12 43962240 43962827 -99823628 - LTR14B LTR ERVK 0 608 1 239 388 0 0 chr12 43962827 43962925 -99823530 - L2 LINE L2 -17 3255 3158 22 56 0 0 chr12 43962964 43963000 -99823455 + AT_rich Low_complexity Low_complexity 1 36 0 2311 85 0 33 chr12 43963275 43963582 -99822873 - AluSc SINE Alu -12 297 1 352 256 79 61 chr12 43963802 43963966 -99822489 - L1M4c LINE L1 -5817 1032 866 251 93 56 0 chr12 43965563 43965617 -99820838 + A-rich Low_complexity Low_complexity 4 60 0 21 0 0 0 chr12 43965674 43965695 -99820760 + AT_rich Low_complexity Low_complexity 1 21 0 630 312 81 0 chr12 43966588 43966715 -99819740 - MIR SINE MIR -18 244 129 2305 94 16 0 chr12 43966715 43967022 -99819433 + AluSp SINE Alu 1 312 -1 630 312 81 0 chr12 43967022 43967115 -99819340 - MIR SINE MIR -133 129 6 199 255 191 21 chr12 43967923 43968017 -99818438 - MIR SINE MIR -81 127 18 328 102 0 0 chr12 43968527 43968576 -99817879 + FLAM SINE Alu 83 131 -2 2293 114 0 0 chr12 43968589 43968895 -99817560 + AluSx SINE Alu 1 306 -6 608 340 90 19 chr12 43970299 43970667 -99815788 - L3 LINE CR1 -69 1508 1115 187 363 101 22 chr12 43970727 43970906 -99815549 + L2 LINE L2 1686 1878 -1436 319 284 63 24 chr12 43970948 43971075 -99815380 + MIR SINE MIR 9 140 -122 1418 185 53 90 chr12 43971184 43971563 -99814892 - MLT1A1 LTR MaLR 0 365 1 969 159 104 0 chr12 43971567 43971730 -99814725 - MER5A DNA MER1_type -9 180 1 287 333 125 7 chr12 43971756 43971900 -99814555 + MER5A DNA MER1_type 26 186 -3 211 338 106 0 chr12 43971919 43972061 -99814394 + L2 LINE L2 1932 2088 -1226 912 252 102 58 chr12 43972121 43972514 -99813941 - MLT1J LTR MaLR 0 511 102 6647 225 58 9 chr12 43972540 43973982 -99812473 + L1PA13 LINE L1 1 1513 -6068 764 152 129 8 chr12 43973988 43974120 -99812335 - MER5A DNA MER1_type -41 148 1 212 316 151 29 chr12 43974146 43974285 -99812170 + MER5A DNA MER1_type 26 181 -8 307 281 12 81 chr12 43974310 43974470 -99811985 + L1PA13 LINE L1 1537 1685 -5896 5551 238 27 10 chr12 43974493 43976092 -99810363 + L1PA13 LINE L1 2471 4097 -3487 12794 165 19 13 chr12 43976095 43976289 -99810166 + L1PA13 LINE L1 4491 4682 -2919 2338 119 0 0 chr12 43976289 43976599 -99809856 + AluSx SINE Alu 1 310 -2 12794 165 19 13 chr12 43976599 43979176 -99807279 + L1PA13 LINE L1 4682 7227 -374 1472 195 119 7 chr12 43979176 43979479 -99806976 + MER1B DNA MER1_type 1 337 0 12794 165 19 13 chr12 43979479 43979851 -99806604 + L1PA13 LINE L1 7227 7595 -6 755 166 21 0 chr12 43979980 43980130 -99806325 - MLT1C LTR MaLR -3 464 226 2615 146 94 35 chr12 43980141 43984383 -99802072 - SATR1 Satellite Satellite -49 4489 1 354 245 133 10 chr12 43984672 43984770 -99801685 - L2 LINE L2 -3 3310 3201 8149 26 1 1 chr12 43984825 43986085 -99800370 + L1PA4 LINE L1 4892 6152 -3 1465 222 23 7 chr12 43986100 43986558 -99799897 - MER34 LTR ERV1 -49 493 1 577 265 22 22 chr12 43986595 43986731 -99799724 + L2 LINE L2 3137 3272 0 26 0 0 0 chr12 43986940 43986966 -99799489 + AT_rich Low_complexity Low_complexity 1 26 0 252 382 55 0 chr12 43987275 43987385 -99799070 + L2 LINE L2 3141 3256 -16 23 0 0 0 chr12 43987386 43987409 -99799046 + AT_rich Low_complexity Low_complexity 1 23 0 986 225 0 0 chr12 43987410 43987579 -99798876 - FAM SINE Alu -6 169 1 21 82 0 0 chr12 43987747 43987796 -99798659 + AT_rich Low_complexity Low_complexity 1 49 0 1560 187 17 10 chr12 43988311 43988600 -99797855 + AluJo SINE Alu 1 291 -21 405 235 15 37 chr12 43988894 43989030 -99797425 + L2 LINE L2 3041 3173 -140 908 287 127 36 chr12 43989032 43989503 -99796952 - LTR33 LTR ERVL 0 521 8 823 180 0 7 chr12 43989562 43989701 -99796754 - FRAM SINE Alu -18 158 21 253 311 22 0 chr12 43989701 43989791 -99796664 + L2 LINE L2 3222 3313 0 254 29 29 0 chr12 43989921 43989956 -99796499 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 285 167 0 0 chr12 43989955 43990009 -99796446 + (TA)n Simple_repeat Simple_repeat 1 54 0 31 0 0 0 chr12 43990043 43990074 -99796381 + AT_rich Low_complexity Low_complexity 1 31 0 3515 128 12 2 chr12 43991013 43991505 -99794950 - LOR1a LTR ERV1 0 497 1 754 253 111 5 chr12 43991506 43991696 -99794759 + MLT1I LTR MaLR 200 409 0 626 92 20 0 chr12 43992581 43992679 -99793776 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 437 274 231 5 chr12 43992680 43992888 -99793567 + MIR SINE MIR 2 256 -6 1109 135 49 16 chr12 43993990 43994175 -99792280 + MLT1A1 LTR MaLR 1 191 -174 299 65 22 22 chr12 43994254 43994300 -99792155 - MLT1A1 LTR MaLR -319 46 1 972 171 23 17 chr12 43994492 43994667 -99791788 + MLT1A1 LTR MaLR 190 365 0 1610 219 9 23 chr12 43994700 43995047 -99791408 + MLT1A2 LTR MaLR 33 374 0 406 173 0 12 chr12 43995238 43995319 -99791136 - L1M4 LINE L1 -1446 4700 4621 1440 146 152 85 chr12 43995606 43995742 -99790713 + MER1B DNA MER1_type 1 127 -2583 2296 91 0 0 chr12 43995742 43996039 -99790416 + AluSx SINE Alu 6 302 -10 1440 146 152 85 chr12 43996039 43996218 -99790237 + MER1B DNA MER1_type 127 337 0 1805 172 52 20 chr12 43996378 43996730 -99789725 - MLT1A1 LTR MaLR 0 365 1 312 167 36 24 chr12 43996987 43997071 -99789384 - L1ME4a LINE L1 -258 5863 5779 319 321 126 51 chr12 43997274 43997753 -99788702 - L1M4 LINE L1 -2562 3584 3077 33 56 0 0 chr12 43997781 43997835 -99788620 + AT_rich Low_complexity Low_complexity 1 54 0 669 274 20 36 chr12 43997851 43998099 -99788356 - L2 LINE L2 0 3313 3070 249 289 44 22 chr12 43999198 43999288 -99787167 - L2 LINE L2 0 3272 3181 206 349 0 0 chr12 44000133 44000196 -99786259 - MIR SINE MIR -147 115 53 738 211 211 10 chr12 44000626 44000825 -99785630 - MER8 DNA MER2_type 0 239 1 2706 71 15 0 chr12 44000989 44001313 -99785142 - L1PA7 LINE L1 -3 6151 5823 29097 110 23 63 chr12 44001315 44006398 -99780057 - L1P LINE L1 -1258 4888 12 370 265 88 17 chr12 44006420 44006601 -99779854 - L1MC5 LINE L1 -49 7912 7719 204 364 64 29 chr12 44007135 44007275 -99779180 + L2 LINE L2 3112 3256 -16 370 245 21 0 chr12 44008148 44008242 -99778213 + L1M4 LINE L1 4906 5001 -1145 2130 128 0 38 chr12 44008449 44008768 -99777687 - AluSq SINE Alu -6 307 1 567 191 29 17 chr12 44008950 44009123 -99777332 + CT-rich Low_complexity Low_complexity 2 176 0 2534 54 0 13 chr12 44009117 44009457 -99776998 - AluY SINE Alu 0 336 1 531 118 89 126 chr12 44009499 44009634 -99776821 - FLAM_A SINE Alu -2 131 2 217 248 66 15 chr12 44009651 44009728 -99776727 + MIR SINE MIR 83 151 -57 416 288 7 28 chr12 44010196 44010382 -99776073 + MIR SINE MIR 21 196 -65 1135 234 45 48 chr12 44010901 44011319 -99775136 + L1MC4 LINE L1 7531 7947 -95 181 194 0 0 chr12 44011442 44011478 -99774977 - MIR SINE MIR -117 145 110 236 241 46 35 chr12 44011538 44011625 -99774830 - MIR SINE MIR -75 133 46 586 189 90 8 chr12 44012777 44012899 -99773556 - FLAM_A SINE Alu 0 133 2 321 323 146 43 chr12 44013346 44013746 -99772709 - L2 LINE L2 -198 3074 2602 246 305 168 11 chr12 44014171 44014266 -99772189 + L2 LINE L2 3141 3250 -22 34 42 0 0 chr12 44014750 44014798 -99771657 + AT_rich Low_complexity Low_complexity 1 48 0 2598 51 0 6 chr12 44014894 44015207 -99771248 - AluY SINE Alu 0 311 1 21 0 0 0 chr12 44015979 44016000 -99770455 + AT_rich Low_complexity Low_complexity 1 21 0 1429 71 0 0 chr12 44017920 44018090 -99768365 - AluSq SINE Alu -84 229 60 209 310 0 42 chr12 44018168 44018239 -99768216 + MIR SINE MIR 66 133 -129 194 0 0 37 chr12 44018340 44018367 -99768088 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2095 121 0 0 chr12 44018370 44018651 -99767804 - AluSq SINE Alu -32 281 1 563 323 42 47 chr12 44018724 44018771 -99767684 + L1MC/D LINE L1 4691 4737 -1820 404 95 0 158 chr12 44018771 44018866 -99767589 + MADE1 DNA Mariner 1 80 0 563 323 42 47 chr12 44018866 44019869 -99766586 + L1MC/D LINE L1 4737 5735 -822 2022 146 50 16 chr12 44019869 44020252 -99766203 + MSTD LTR MaLR 1 396 0 563 323 42 47 chr12 44020252 44020324 -99766131 + L1MC/D LINE L1 5735 5806 -751 2472 60 0 3 chr12 44020376 44020676 -99765779 + AluY SINE Alu 1 299 -12 25 0 0 0 chr12 44020733 44020758 -99765697 + AT_rich Low_complexity Low_complexity 1 25 0 787 153 8 0 chr12 44020776 44020894 -99765561 - 5S rRNA rRNA -1 120 2 275 203 13 0 chr12 44020948 44021027 -99765428 + (TG)n Simple_repeat Simple_repeat 1 80 0 1873 117 3 3 chr12 44021196 44021479 -99764976 - L1PB1 LINE L1 -5 6146 5864 198 0 0 0 chr12 44021488 44021510 -99764945 + (TA)n Simple_repeat Simple_repeat 2 23 0 2449 43 3 13 chr12 44021510 44021814 -99764641 - AluY SINE Alu -10 301 1 1909 156 139 17 chr12 44021871 44022287 -99764168 + MLT1C LTR MaLR 1 467 0 402 329 146 0 chr12 44022363 44022582 -99763873 - MIR SINE MIR -10 252 2 998 265 28 16 chr12 44023690 44023939 -99762516 - MIR SINE MIR -2 260 9 270 23 0 23 chr12 44023977 44024021 -99762434 - L1PA4 LINE L1 0 6155 6113 23 68 0 0 chr12 44024086 44024130 -99762325 + AT_rich Low_complexity Low_complexity 1 44 0 1404 158 75 116 chr12 44024137 44024498 -99761957 + MER7A DNA MER2_type 1 344 -2 2052 122 30 13 chr12 44024506 44024809 -99761646 - AluSx SINE Alu -4 308 1 22 56 0 0 chr12 44024812 44024848 -99761607 + AT_rich Low_complexity Low_complexity 1 36 0 2288 122 11 3 chr12 44024908 44025260 -99761195 + THE1A LTR MaLR 1 355 0 187 328 49 0 chr12 44025999 44026060 -99760395 + L2 LINE L2 3245 3308 -5 1657 154 19 4 chr12 44027092 44027358 -99759097 - AluJb SINE Alu -20 292 23 2918 94 75 0 chr12 44027455 44027868 -99758587 - MLT2A2 LTR ERVL -9 444 1 308 274 40 16 chr12 44028232 44028356 -99758099 - L2 LINE L2 -103 3210 3084 233 286 0 0 chr12 44028380 44028436 -99758019 + (TG)n Simple_repeat Simple_repeat 1 56 0 220 204 0 0 chr12 44028464 44028508 -99757947 - L2 LINE L2 -280 3033 2990 1945 215 215 25 chr12 44028513 44029344 -99757111 + Zaphod DNA AcHobo 2 990 -3041 1441 241 66 2 chr12 44029342 44029752 -99756703 + Zaphod DNA AcHobo 3595 4030 -1 * 233 265 0 0 chr12 44029765 44029814 -99756641 - L2 LINE L2 -333 2980 2932 1387 218 18 50 chr12 44029819 44030199 -99756256 - MLT1A2 LTR MaLR -6 368 1 732 298 91 54 chr12 44030199 44030551 -99755904 - L2 LINE L2 -378 2936 2572 6016 149 9 9 chr12 44030553 44032055 -99754400 + L1PA16 LINE L1 4659 6165 -1 5684 157 54 28 chr12 44032051 44032357 -99754098 + L1MC1 LINE L1 5017 5314 -1019 * 1872 158 32 0 chr12 44032357 44032642 -99753813 + AluSx SINE Alu 1 294 -18 5684 157 54 28 chr12 44032642 44033608 -99752847 + L1MC1 LINE L1 5314 6332 -1 489 212 195 0 chr12 44033611 44033672 -99752783 - L1MEc LINE L1 -6219 177 129 531 45 0 0 chr12 44033672 44033738 -99752717 + (TG)n Simple_repeat Simple_repeat 1 66 0 489 212 195 0 chr12 44033738 44033794 -99752661 - L1MEc LINE L1 -6267 129 37 2060 135 3 0 chr12 44034256 44034552 -99751903 - AluSx SINE Alu -15 297 1 377 360 118 37 chr12 44037588 44038589 -99747866 - L2 LINE L2 -16 3256 2170 536 295 23 6 chr12 44038592 44038765 -99747690 + MER117 DNA MER1_type 1 176 -21 1353 43 0 0 chr12 44039033 44039196 -99747259 + L1MA1 LINE L1 6134 6296 -6 748 97 0 0 chr12 44040262 44040374 -99746081 - THE1B LTR MaLR 0 364 264 384 23 0 0 chr12 44040365 44040409 -99746046 - THE1C LTR MaLR -331 44 1 * 22 73 0 15 chr12 44040448 44040491 -99745964 + AT_rich Low_complexity Low_complexity 1 44 -23 2388 168 2 26 chr12 44040491 44040950 -99745505 + L1MB5 LINE L1 5713 6160 -14 22 73 0 15 chr12 44040950 44040974 -99745481 + AT_rich Low_complexity Low_complexity 44 67 0 508 148 11 0 chr12 44041054 44041142 -99745313 - MER53 DNA DNA -100 89 1 283 263 62 0 chr12 44041145 44041225 -99745230 + L2 LINE L2 3208 3292 -21 247 340 77 21 chr12 44041703 44041938 -99744517 - L1ME LINE L1 -536 5585 5338 1850 133 37 10 chr12 44042295 44042589 -99743866 - AluSx SINE Alu -9 303 2 1348 109 5 5 chr12 44043024 44043260 -99743195 - AluSg/x SINE Alu 0 334 99 667 182 0 0 chr12 44044401 44044511 -99741944 + FLAM_C SINE Alu 1 110 -33 438 53 0 0 chr12 44044518 44044575 -99741880 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 246 119 0 119 chr12 44046038 44046105 -99740350 + MER53 DNA DNA 1 59 -130 193 229 66 16 chr12 44046231 44046292 -99740163 - L2 LINE L2 -4 3268 3205 2017 115 14 7 chr12 44046970 44047258 -99739197 + AluSx SINE Alu 9 298 -14 348 289 151 28 chr12 44047573 44047864 -99738591 + L1ME LINE L1 5435 5761 -360 23 86 0 0 chr12 44048000 44048058 -99738397 + AT_rich Low_complexity Low_complexity 1 58 0 999 286 24 44 chr12 44050416 44050825 -99735630 + MLT1J LTR MaLR 1 401 -110 276 300 57 32 chr12 44051050 44051310 -99735145 + L1MEd LINE L1 551 820 -5299 2168 119 0 0 chr12 44051310 44051596 -99734859 - AluSg SINE Alu -24 286 1 276 300 57 32 chr12 44051596 44051615 -99734840 + L1MEd LINE L1 820 837 -5282 21 57 0 0 chr12 44051734 44051769 -99734686 + AT_rich Low_complexity Low_complexity 1 35 0 678 226 14 73 chr12 44051769 44052044 -99734411 + L1MEd LINE L1 930 1188 -4931 14486 26 3 2 chr12 44052067 44054565 -99731890 + L1PA8 LINE L1 3670 6166 -6 616 205 60 90 chr12 44054568 44054768 -99731687 - Charlie4 DNA MER1_type -1764 197 4 658 334 124 19 chr12 44054770 44055357 -99731098 - L2 LINE L2 -1043 2271 1623 539 255 245 5 chr12 44055359 44055559 -99730896 + MIR SINE MIR 12 259 -3 557 251 127 76 chr12 44055623 44055993 -99730462 - MLT1F1 LTR MaLR 0 590 202 270 324 88 27 chr12 44056040 44056188 -99730267 - MER5B DNA MER1_type -19 159 3 553 321 216 24 chr12 44056545 44057451 -99729004 + L2 LINE L2 959 2038 -1276 1584 237 66 44 chr12 44057455 44058004 -99728451 + MLT1F1 LTR MaLR 1 566 -1 1543 207 59 9 chr12 44058006 44058330 -99728125 + MER58B DNA MER1_type 1 340 -1 330 132 0 0 chr12 44058499 44058552 -99727903 + (TA)n Simple_repeat Simple_repeat 1 53 0 401 356 48 38 chr12 44058601 44058890 -99727565 + L2 LINE L2 2279 2570 -744 457 292 15 50 chr12 44058914 44059116 -99727339 + L2 LINE L2 3117 3311 -2 401 77 0 0 chr12 44059281 44059333 -99727122 + Alu SINE Alu 242 293 -9 24 0 0 0 chr12 44059640 44059664 -99726791 + AT_rich Low_complexity Low_complexity 1 24 0 988 256 82 30 chr12 44059880 44060150 -99726305 + MLT1I LTR MaLR 116 399 -10 183 304 0 36 chr12 44061206 44061262 -99725193 + L2 LINE L2 2729 2782 -532 27 0 0 0 chr12 44062240 44062267 -99724188 + AT_rich Low_complexity Low_complexity 1 27 0 371 318 209 7 chr12 44062575 44062877 -99723578 + L2 LINE L2 2477 2839 -475 2185 71 54 24 chr12 44063074 44063368 -99723087 - AluSp SINE Alu -10 303 1 326 213 107 33 chr12 44065340 44065490 -99720965 - L1MC5 LINE L1 -30 7931 7771 532 216 0 0 chr12 44066890 44066987 -99719468 - FAM SINE Alu -83 102 6 735 171 0 0 chr12 44066999 44067116 -99719339 + FLAM_C SINE Alu 1 117 -16 574 226 153 29 chr12 44067131 44067445 -99719010 - L1MC5 LINE L1 -298 7663 7311 405 0 0 0 chr12 44067445 44067490 -99718965 + (TA)n Simple_repeat Simple_repeat 1 45 0 1676 124 0 4 chr12 44067492 44067733 -99718722 - AluJb SINE Alu 0 312 73 823 130 0 70 chr12 44067933 44068133 -99718322 + THE1C-int LTR MaLR 1395 1580 0 2665 105 5 0 chr12 44068133 44068506 -99717949 + THE1C LTR MaLR 1 375 0 857 198 103 109 chr12 44068738 44069017 -99717438 - L1MC5 LINE L1 -787 7174 6898 1926 156 6 33 chr12 44069017 44069382 -99717073 + THE1A LTR MaLR 1 355 0 857 198 103 109 chr12 44069382 44069596 -99716859 - L1MC5 LINE L1 -1063 6898 6684 1928 137 156 13 chr12 44069954 44070327 -99716128 + MSTA LTR MaLR 3 428 0 331 360 90 28 chr12 44070329 44070651 -99715804 + L2 LINE L2 675 1016 -2298 927 169 31 36 chr12 44070869 44071094 -99715361 + THE1C LTR MaLR 1 224 -151 572 167 11 150 chr12 44074194 44074374 -99712081 + THE1C LTR MaLR 221 375 0 299 198 38 75 chr12 44074379 44074485 -99711970 + L2 LINE L2 1291 1392 -1922 377 310 35 0 chr12 44074515 44074657 -99711798 - MIR SINE MIR -24 238 92 335 316 106 23 chr12 44074674 44074945 -99711510 - MLT1H LTR MaLR -19 530 195 201 361 28 0 chr12 44075072 44075144 -99711311 - MIR3 SINE MIR -120 88 15 558 268 72 10 chr12 44075669 44075878 -99710577 - MLT1J2 LTR MaLR -25 425 204 288 228 196 0 chr12 44075919 44076011 -99710444 - MLT1J2 LTR MaLR -309 141 32 322 308 62 26 chr12 44076018 44076213 -99710242 + L2 LINE L2 1960 2161 -1153 986 178 24 29 chr12 44076401 44076609 -99709846 - MER20 DNA MER1_type -1 218 12 957 210 0 0 chr12 44076704 44076871 -99709584 - AluJb SINE Alu -15 297 131 751 242 63 16 chr12 44077099 44077289 -99709166 + MIR SINE MIR 16 214 -48 6850 121 44 18 chr12 44077292 44078431 -99708024 + Tigger1 DNA MER2_type 2 1169 -1249 6531 139 16 7 chr12 44078427 44079538 -99706917 + Tigger1 DNA MER2_type 1298 2418 0 * 575 238 62 38 chr12 44079676 44079836 -99706619 + FRAM SINE Alu 1 164 -2 2404 114 8 3 chr12 44079886 44080254 -99706201 - L1PB1 LINE L1 0 6151 5782 354 91 0 0 chr12 44080254 44080309 -99706146 + (TA)n Simple_repeat Simple_repeat 2 56 0 9415 191 18 15 chr12 44080333 44083157 -99703298 - L1PB1 LINE L1 -360 5791 2962 2145 197 55 2 chr12 44083161 44083634 -99702821 + L1PB1 LINE L1 2455 2952 -3194 337 302 63 24 chr12 44083700 44083826 -99702629 + L2 LINE L2 3136 3266 -6 327 49 0 0 chr12 44084300 44084341 -99702114 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr12 44084381 44084409 -99702046 + AT_rich Low_complexity Low_complexity 1 28 0 526 240 8 8 chr12 44088449 44088570 -99697885 - L2 LINE L2 -1 3312 3192 419 109 0 0 chr12 44090755 44090841 -99695614 + AluJ/FRAM SINE Alu 230 315 0 23 0 0 0 chr12 44092131 44092154 -99694301 + AT_rich Low_complexity Low_complexity 1 23 0 492 271 100 0 chr12 44092336 44092476 -99693979 + MER58B DNA MER1_type 188 341 0 246 369 10 0 chr12 44092549 44092652 -99693803 + MIR SINE MIR 52 155 -107 614 225 132 41 chr12 44092772 44093120 -99693335 - MLT1F LTR MaLR -19 523 176 243 224 45 60 chr12 44093133 44093200 -99693255 + MLT1H1 LTR MaLR 129 194 -361 * 601 276 7 28 chr12 44093196 44093377 -99693078 - MLT1H1 LTR MaLR -374 221 1 230 286 0 0 chr12 44094335 44094391 -99692064 - MIR SINE MIR -8 254 199 559 269 36 12 chr12 44094392 44094559 -99691896 - MER5B DNA MER1_type -7 171 1 23 0 0 0 chr12 44094705 44094728 -99691727 + AT_rich Low_complexity Low_complexity 1 23 0 194 349 0 15 chr12 44094743 44094809 -99691646 + L2 LINE L2 3189 3253 -19 224 108 86 11 chr12 44095329 44095422 -99691033 + (TTAA)n Simple_repeat Simple_repeat 2 101 0 22 56 0 0 chr12 44095422 44095458 -99690997 + AT_rich Low_complexity Low_complexity 1 36 0 3101 82 23 14 chr12 44096112 44096552 -99689903 - MLT2A1 LTR ERVL 0 444 1 257 244 13 51 chr12 44096877 44096955 -99689500 + MIR SINE MIR 187 261 -1 420 20 0 0 chr12 44097219 44097268 -99689187 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr12 44097822 44097843 -99688612 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 44097904 44097925 -99688530 + AT_rich Low_complexity Low_complexity 1 21 0 226 246 43 0 chr12 44097987 44098056 -99688399 + (TA)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr12 44098984 44099008 -99687447 + AT_rich Low_complexity Low_complexity 1 24 0 213 271 17 0 chr12 44099305 44099364 -99687091 + MIR SINE MIR 203 262 0 637 251 77 5 chr12 44099932 44100127 -99686328 - MER3 DNA MER1_type 0 209 1 199 299 85 55 chr12 44100383 44100547 -99685908 + L2 LINE L2 346 514 -2800 264 77 0 0 chr12 44102397 44102436 -99684019 + (TG)n Simple_repeat Simple_repeat 2 40 0 752 314 146 40 chr12 44104604 44105159 -99681296 + L3 LINE CR1 793 1406 -171 288 0 0 0 chr12 44105288 44105320 -99681135 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 315 0 0 0 chr12 44105319 44105354 -99681101 + (CA)n Simple_repeat Simple_repeat 1 35 0 235 226 218 32 chr12 44105532 44105656 -99680799 + L3 LINE CR1 1430 1576 -1 1988 136 7 3 chr12 44106622 44106963 -99679492 - AluSx SINE Alu 0 312 1 381 245 101 31 chr12 44107092 44107251 -99679204 + MIR SINE MIR 82 251 -11 238 288 185 19 chr12 44109124 44109293 -99677162 + MIR3 SINE MIR 2 200 -61 682 286 47 28 chr12 44109963 44110218 -99676237 + MIR SINE MIR 2 261 -1 635 243 231 15 chr12 44110303 44110571 -99675884 - MER102b DNA MER1_type -15 326 1 2885 6 0 0 chr12 44110792 44111103 -99675352 - AluYa5 SINE Alu 0 311 1 208 315 56 22 chr12 44111261 44111350 -99675105 + L2 LINE L2 3183 3274 -39 2278 153 67 47 chr12 44111354 44111849 -99674606 - MLT1D LTR MaLR 0 505 1 333 352 75 51 chr12 44112029 44112282 -99674173 + L2 LINE L2 3014 3272 0 2189 84 32 29 chr12 44112473 44112817 -99673638 - THE1C LTR MaLR 0 375 31 281 180 20 0 chr12 44113207 44113257 -99673198 - 5S rRNA rRNA -70 51 1 290 376 58 35 chr12 44113835 44114008 -99672447 - MIR SINE MIR -70 192 16 659 297 74 0 chr12 44114016 44114191 -99672264 + MER91A DNA MER1_type 9 196 0 2418 78 0 3 chr12 44114272 44114579 -99671876 + AluY SINE Alu 1 306 -5 220 256 31 108 chr12 44114853 44114982 -99671473 - L2 LINE L2 -10 3262 3144 25 0 0 0 chr12 44115961 44115986 -99670469 + AT_rich Low_complexity Low_complexity 1 25 0 349 242 33 22 chr12 44116040 44116131 -99670324 - MIR SINE MIR -52 210 119 330 87 0 0 chr12 44116152 44116198 -99670257 + (TA)n Simple_repeat Simple_repeat 1 46 0 1022 205 70 86 chr12 44116253 44116419 -99670036 - L1ME3A LINE L1 -89 6081 5914 2124 141 30 15 chr12 44116419 44116824 -99669631 + L1MB8 LINE L1 5768 6178 0 1022 205 70 86 chr12 44116824 44117042 -99669413 - L1ME3A LINE L1 -256 5914 5703 326 308 110 55 chr12 44117206 44117570 -99668885 - L1ME3A LINE L1 -2132 5676 5293 314 272 126 33 chr12 44117632 44117674 -99668781 - L1ME3A LINE L1 -893 5253 5216 2901 151 17 4 chr12 44117674 44118204 -99668251 - L1MB3 LINE L1 0 6183 5647 314 272 126 33 chr12 44118204 44118507 -99667948 - L1ME3A LINE L1 -930 5216 4873 550 307 112 15 chr12 44119377 44119582 -99666873 + MIR SINE MIR 19 243 -19 1647 177 48 7 chr12 44119764 44120058 -99666397 + AluSx SINE Alu 1 306 -6 239 116 0 0 chr12 44120834 44120877 -99665578 + L1MC4 LINE L1 6659 6701 -1341 692 292 41 45 chr12 44122219 44122462 -99663993 - MIR SINE MIR -11 251 10 240 200 0 0 chr12 44122721 44122771 -99663684 + (TA)n Simple_repeat Simple_repeat 2 51 0 210 360 80 0 chr12 44124012 44124112 -99662343 - L2 LINE L2 -16 3256 3149 503 245 86 29 chr12 44124688 44124933 -99661522 - L1ME4a LINE L1 -73 6048 5790 739 252 74 79 chr12 44125738 44126195 -99660260 - MLT1C LTR MaLR -5 462 8 1857 154 0 24 chr12 44127018 44127310 -99659145 - AluJb SINE Alu -22 290 6 225 300 0 0 chr12 44127345 44127405 -99659050 + L1ME4a LINE L1 5600 5659 -2149 465 71 0 0 chr12 44127425 44127495 -99658960 + (CA)n Simple_repeat Simple_repeat 1 70 0 1463 177 88 3 chr12 44127496 44127779 -99658676 - L1MC1 LINE L1 -8 6325 6019 277 259 79 22 chr12 44127795 44127934 -99658521 + L1ME4a LINE L1 5751 5897 -224 333 131 0 0 chr12 44127952 44128013 -99658442 + (TG)n Simple_repeat Simple_repeat 2 62 0 603 333 106 19 chr12 44128174 44128553 -99657902 + L2 LINE L2 2302 2713 -601 314 140 0 0 chr12 44128559 44128609 -99657846 - MLT2B2 LTR ERVL -6 514 465 1093 99 7 0 chr12 44128659 44128810 -99657645 - MLT2B2 LTR ERVL -42 473 322 1123 231 101 20 chr12 44128815 44129162 -99657293 - MLT1D LTR MaLR -130 375 1 325 284 127 86 chr12 44129795 44130087 -99656368 + L2 LINE L2 2346 2649 -665 25 0 0 0 chr12 44130170 44130195 -99656260 + AT_rich Low_complexity Low_complexity 1 25 0 409 233 48 0 chr12 44130505 44130608 -99655847 - MIR SINE MIR -48 214 107 985 208 37 28 chr12 44130664 44130880 -99655575 - MER20 DNA MER1_type 0 219 2 2984 318 116 21 chr12 44130938 44133262 -99653193 - L2 LINE L2 -1 3271 725 4112 258 112 28 chr12 44133508 44135072 -99651383 - L2 LINE L2 -321 2992 1292 415 300 131 9 chr12 44135192 44135542 -99650913 - L1M4 LINE L1 -3576 2570 2178 435 325 52 45 chr12 44135628 44135917 -99650538 + LTR67 LTR ERVL 1 291 -266 1218 195 93 16 chr12 44136057 44136370 -99650085 + MLT1J1 LTR MaLR 6 342 -104 249 277 43 11 chr12 44136405 44136499 -99649956 - MER5A DNA MER1_type -90 99 3 8527 93 22 31 chr12 44137606 44137897 -99648558 + L1PA8A LINE L1 3956 4248 -1883 2571 34 3 0 chr12 44137897 44138191 -99648264 - AluY SINE Alu -16 295 1 8527 93 22 31 chr12 44138191 44140042 -99646413 + L1PA8A LINE L1 4248 6076 -55 998 169 62 0 chr12 44140213 44140391 -99646064 + MER20 DNA MER1_type 30 218 -1 360 341 8 8 chr12 44141742 44141874 -99644581 - L2 LINE L2 0 3313 3182 218 262 0 0 chr12 44141959 44142001 -99644454 - L2 LINE L2 -18 3295 3254 190 306 32 0 chr12 44142040 44142102 -99644353 - MIR SINE MIR -121 141 78 365 367 0 8 chr12 44142533 44142653 -99643802 + MLT1K LTR MaLR 97 215 -373 491 270 82 0 chr12 44142755 44142914 -99643541 + MLT1K LTR MaLR 409 580 -8 542 340 45 5 chr12 44143964 44144195 -99642260 - MIR SINE MIR -16 246 5 448 240 53 27 chr12 44144673 44144691 -99641764 - L1MA10 LINE L1 0 6334 6317 385 248 56 135 chr12 44144691 44144944 -99641511 - L1ME1 LINE L1 -5 6230 5995 * 5018 154 70 16 chr12 44144939 44145240 -99641215 - L1MA8 LINE L1 -5 6286 6003 2078 100 48 0 chr12 44145240 44145529 -99640926 - AluSc SINE Alu -6 303 1 5018 154 70 16 chr12 44145529 44146197 -99640258 - L1MA8 LINE L1 -288 6003 5264 2770 206 54 20 chr12 44146188 44146470 -99639985 - L1ME1 LINE L1 -207 6028 5757 * 2491 207 21 49 chr12 44146470 44147040 -99639415 + MLT2B3 LTR ERVL 1 554 0 2770 206 54 20 chr12 44147040 44148067 -99638388 - L1ME1 LINE L1 -478 5757 4674 408 276 48 7 chr12 44148072 44148217 -99638238 - L1ME1 LINE L1 -5533 863 713 24 0 0 0 chr12 44148496 44148520 -99637935 + AT_rich Low_complexity Low_complexity 1 24 0 684 54 0 0 chr12 44148727 44148819 -99637636 - L1PA7 LINE L1 -840 5306 5215 6502 65 0 1 chr12 44148819 44149696 -99636759 + L1PA7 LINE L1 5306 6182 0 2684 35 0 16 chr12 44149771 44150084 -99636371 + AluY SINE Alu 1 308 -3 881 184 12 152 chr12 44150090 44150426 -99636029 + AluSq SINE Alu 1 289 -14 832 238 122 13 chr12 44150855 44151642 -99634813 + L1ME1 LINE L1 2611 3311 -2855 2173 119 7 0 chr12 44151642 44151944 -99634511 + AluSx SINE Alu 1 304 -8 832 238 122 13 chr12 44151944 44154141 -99632314 + L1ME1 LINE L1 3311 6147 -19 263 143 0 0 chr12 44154141 44154183 -99632272 + L1MB1 LINE L1 6127 6168 0 2624 122 21 14 chr12 44155077 44155502 -99630953 + MSTA LTR MaLR 1 428 0 3186 125 40 89 chr12 44155896 44156528 -99629927 + L1PA16 LINE L1 5566 6166 0 1220 171 186 4 chr12 44156556 44156830 -99629625 + L1MC1 LINE L1 6010 6333 0 258 180 70 120 chr12 44157478 44157578 -99628877 + MIR3 SINE MIR 111 205 -3 329 381 32 0 chr12 44158001 44158127 -99628328 + L2 LINE L2 3133 3262 -10 218 313 24 24 chr12 44158203 44158286 -99628169 - MIR SINE MIR -56 206 124 1053 240 125 46 chr12 44159815 44160182 -99626273 - MLT1I LTR MaLR -7 402 7 22 0 0 0 chr12 44161427 44161449 -99625006 + AT_rich Low_complexity Low_complexity 1 22 0 966 274 50 32 chr12 44161508 44161888 -99624567 - L1MC4 LINE L1 -140 7902 7516 3873 100 2 12 chr12 44161974 44162545 -99623910 + L1PB1 LINE L1 5586 6150 -1 426 150 64 168 chr12 44162806 44162984 -99623471 + MIR SINE MIR 5 163 -45 207 0 0 0 chr12 44163014 44163037 -99623418 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr12 44163085 44163107 -99623348 + AT_rich Low_complexity Low_complexity 1 22 0 880 157 0 11 chr12 44163886 44164064 -99622391 + GA-rich Low_complexity Low_complexity 4 179 0 484 309 87 23 chr12 44164677 44164909 -99621546 - MIR SINE MIR -4 258 4 2810 7 0 0 chr12 44165593 44165896 -99620559 - AluYa5 SINE Alu -8 303 1 302 241 23 0 chr12 44166064 44166151 -99620304 - L1ME4a LINE L1 -67 6054 5966 264 238 13 60 chr12 44166196 44166302 -99620153 + (TA)n Simple_repeat Simple_repeat 1 100 -44 3312 202 28 1 chr12 44166302 44166994 -99619461 + MER67C LTR ERV1 1 710 0 264 238 13 60 chr12 44166994 44167038 -99619417 + (TA)n Simple_repeat Simple_repeat 100 144 0 233 190 134 35 chr12 44167940 44168082 -99618373 - L1ME4a LINE L1 0 6121 5966 204 40 0 0 chr12 44168451 44168476 -99617979 + (T)n Simple_repeat Simple_repeat 1 25 0 287 297 72 36 chr12 44168493 44168631 -99617824 - L2 LINE L2 -6 3307 3165 223 173 58 0 chr12 44169451 44169503 -99616952 + CT-rich Low_complexity Low_complexity 4 58 0 11407 207 66 38 chr12 44169505 44172621 -99613834 - L1MA1 LINE L1 -168 6836 3808 5657 117 48 0 chr12 44172621 44173689 -99612766 - L1PA15 LINE L1 -3 6162 5080 11407 207 66 38 chr12 44173689 44174082 -99612373 - L1MA1 LINE L1 -3196 3808 3427 2140 108 0 63 chr12 44174082 44174415 -99612040 - AluSx SINE Alu 0 312 1 11407 207 66 38 chr12 44174415 44175567 -99610888 - L1MA1 LINE L1 -3577 3427 1825 467 353 88 0 chr12 44175597 44175869 -99610586 - L1PA15-16 LINE L1 -5392 1457 1162 1325 301 41 45 chr12 44175957 44176645 -99609810 - L1PA15-16 LINE L1 -6119 730 46 524 287 80 42 chr12 44176878 44177115 -99609340 - MIR SINE MIR 0 262 17 1176 267 74 47 chr12 44177697 44178460 -99607995 + L2 LINE L2 2530 3313 0 354 238 252 9 chr12 44178509 44178719 -99607736 - L1ME4a LINE L1 -14 6107 5847 41122 31 21 1 chr12 44179878 44185908 -99600547 - L1PA2 LINE L1 0 6155 1 327 300 24 56 chr12 44187181 44187357 -99599098 - MIR SINE MIR -36 172 5 2212 102 0 19 chr12 44187515 44187828 -99598627 - AluSc SINE Alu -2 307 1 2239 118 0 6 chr12 44188557 44188870 -99597585 - AluSx SINE Alu -1 311 1 25 0 0 0 chr12 44188900 44188925 -99597530 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 44189037 44189059 -99597396 + AT_rich Low_complexity Low_complexity 1 22 0 236 373 155 27 chr12 44189874 44190537 -99595918 - L2 LINE L2 -508 2806 2059 246 314 59 29 chr12 44192026 44192128 -99594327 + L2 LINE L2 427 531 -2783 312 238 0 0 chr12 44192136 44192199 -99594256 + MER81 DNA DNA 44 106 -8 933 298 103 34 chr12 44192234 44192390 -99594065 + L2 LINE L2 565 709 -2605 2009 132 10 3 chr12 44192390 44192700 -99593755 - AluSx SINE Alu 0 312 1 933 298 103 34 chr12 44192700 44193076 -99593379 + L2 LINE L2 709 1134 -2180 752 224 121 56 chr12 44193095 44193327 -99593128 + MIR SINE MIR 6 252 -10 1045 304 162 21 chr12 44193336 44193948 -99592507 + L2 LINE L2 1163 1860 -1454 224 319 0 0 chr12 44193981 44194028 -99592427 + L2 LINE L2 2107 2153 -1161 228 297 132 0 chr12 44194963 44195054 -99591401 - MIR SINE MIR -67 195 93 2115 122 0 0 chr12 44195880 44196191 -99590264 + AluSx SINE Alu 1 311 0 6574 36 2 0 chr12 44196740 44197577 -99588878 - L1PA4 LINE L1 -5 6150 5313 22 0 0 0 chr12 44197599 44197621 -99588834 + AT_rich Low_complexity Low_complexity 1 22 0 3170 113 2 0 chr12 44197777 44198235 -99588220 + L1PA15 LINE L1 5707 6165 0 343 326 124 5 chr12 44198373 44198406 -99588049 + L2 LINE L2 3045 3073 -199 2245 164 59 2 chr12 44198406 44198815 -99587640 - MSTB1 LTR MaLR 0 432 1 343 326 124 5 chr12 44198815 44198974 -99587481 + L2 LINE L2 3073 3260 -12 35 24 0 0 chr12 44198974 44199016 -99587439 + AT_rich Low_complexity Low_complexity 1 42 0 24782 40 2 0 chr12 44199016 44203021 -99583434 - L1PA3 LINE L1 -3 6152 2144 326 213 107 33 chr12 44204229 44204379 -99582076 - L1MC5 LINE L1 -30 7931 7771 532 216 0 0 chr12 44205779 44205876 -99580579 - FAM SINE Alu -83 102 6 735 171 0 0 chr12 44205888 44206005 -99580450 + FLAM_C SINE Alu 1 117 -16 574 226 153 29 chr12 44206020 44206334 -99580121 - L1MC5 LINE L1 -298 7663 7311 405 0 0 0 chr12 44206334 44206379 -99580076 + (TA)n Simple_repeat Simple_repeat 1 45 0 2164 125 3 3 chr12 44206382 44206694 -99579761 - AluJb SINE Alu 0 312 1 400 313 0 16 chr12 44206740 44206868 -99579587 - MLT1H LTR MaLR -197 352 227 2593 104 22 0 chr12 44206870 44207236 -99579219 + THE1C LTR MaLR 1 374 -1 8073 122 34 15 chr12 44207238 44207489 -99578966 + THE1C-int LTR MaLR 2 247 -1333 2281 111 17 8 chr12 44207489 44207841 -99578614 - THE1A LTR MaLR 0 355 1 8073 122 34 15 chr12 44207841 44208880 -99577575 + THE1C-int LTR MaLR 247 1317 -263 1049 110 0 0 chr12 44209651 44209787 -99576668 + AluSq/x SINE Alu 1 136 -177 2412 81 0 7 chr12 44209787 44210097 -99576358 + AluSg SINE Alu 1 308 -2 3288 173 9 22 chr12 44210098 44210918 -99575537 + L1M2 LINE L1 4699 5503 -743 360 255 355 42 chr12 44212029 44212429 -99574026 + L3 LINE CR1 885 1409 -168 571 173 0 0 chr12 44212627 44212731 -99573724 - U13 snRNA snRNA 0 104 1 197 202 45 101 chr12 44213277 44213366 -99573089 + MIR3 SINE MIR 124 207 -1 257 365 19 0 chr12 44213394 44213498 -99572957 - L2 LINE L2 -1 3312 3207 249 141 254 28 chr12 44213530 44213601 -99572854 + MER5C DNA MER1_type 1 87 -237 1811 174 0 3 chr12 44213654 44213947 -99572508 - AluJb SINE Alu -14 298 7 2008 129 7 7 chr12 44214176 44214478 -99571977 - AluSg SINE Alu -8 302 1 308 314 149 0 chr12 44215419 44215540 -99570915 - L2 LINE L2 -15 3257 3119 2535 87 6 11 chr12 44215615 44215970 -99570485 + L1PA8 LINE L1 5807 6159 -13 1903 103 58 7 chr12 44215996 44216288 -99570167 - THE1B LTR MaLR -57 307 1 2050 169 93 2 chr12 44216288 44216697 -99569758 + L1MC1 LINE L1 5882 6327 -6 792 211 91 4 chr12 44217246 44217511 -99568944 - L1M4 LINE L1 -937 5209 4922 310 235 53 53 chr12 44217480 44217612 -99568843 - L1M4 LINE L1 -840 5306 5175 * 750 133 0 8 chr12 44217672 44217792 -99568663 + FLAM_C SINE Alu 21 139 -4 1890 124 3 11 chr12 44218234 44218517 -99567938 - AluSx SINE Alu -31 281 1 32617 40 1 2 chr12 44219191 44223180 -99563275 - L1P LINE L1 -2155 3991 9 570 318 108 5 chr12 44225052 44225266 -99561189 - MIR SINE MIR -15 247 12 2189 83 0 48 chr12 44226602 44226915 -99559540 - AluY SINE Alu -13 298 1 372 300 17 17 chr12 44227004 44227124 -99559331 + MIR3 SINE MIR 83 202 -6 451 313 111 17 chr12 44227256 44227576 -99558879 - L2 LINE L2 -5 3308 2913 257 234 117 13 chr12 44228067 44228144 -99558311 + L1MD2 LINE L1 6233 6317 -42 223 371 68 15 chr12 44229061 44229193 -99557262 + MIR3 SINE MIR 66 204 -4 2028 133 0 16 chr12 44230025 44230333 -99556122 + AluSx SINE Alu 1 303 -9 1021 345 87 31 chr12 44230730 44231562 -99554893 + L2 LINE L2 2128 3008 -264 223 303 30 0 chr12 44231676 44231742 -99554713 - L2 LINE L2 -1 3312 3245 395 340 41 14 chr12 44231907 44232054 -99554401 + L2 LINE L2 3122 3272 0 1958 164 40 68 chr12 44232062 44232533 -99553922 - MLT1C LTR MaLR 0 467 10 453 273 256 0 chr12 44233283 44233459 -99552996 - MIR SINE MIR -40 222 2 364 298 48 40 chr12 44233494 44233618 -99552837 + L2 LINE L2 3144 3268 -4 2328 180 42 15 chr12 44235026 44235481 -99550974 - MLT1C LTR MaLR 0 467 1 40 0 0 0 chr12 44235532 44235572 -99550883 + AT_rich Low_complexity Low_complexity 1 40 0 266 300 108 17 chr12 44235577 44235697 -99550758 - MIR SINE MIR -26 236 106 620 299 48 0 chr12 44235721 44235928 -99550527 - MLT1L LTR MaLR 0 615 399 456 19 0 0 chr12 44236319 44236372 -99550083 + (CA)n Simple_repeat Simple_repeat 2 54 0 1162 201 136 60 chr12 44236939 44237381 -99549074 - MLT1E1 LTR MaLR -210 414 1 335 312 180 5 chr12 44237413 44237602 -99548853 - MIR SINE MIR -40 222 1 409 200 36 55 chr12 44237734 44237844 -99548611 + MER5B DNA MER1_type 5 112 -66 376 379 46 11 chr12 44237944 44238118 -99548337 + L3 LINE CR1 1397 1576 -1 2429 61 0 7 chr12 44239735 44240032 -99546423 + AluY SINE Alu 1 295 -16 416 264 25 0 chr12 44240047 44240168 -99546287 + L2 LINE L2 2190 2313 -1001 1750 227 147 17 chr12 44240176 44240994 -99545461 - L2 LINE L2 -7 3306 2395 186 355 0 0 chr12 44241806 44241868 -99544587 - L2 LINE L2 -1 3271 3210 * 1016 171 79 35 chr12 44241835 44242063 -99544392 - MIR SINE MIR -24 238 1 407 248 31 8 chr12 44242380 44242509 -99543946 - MER103 DNA DNA -2 164 33 197 322 86 118 chr12 44242831 44242868 -99543587 + L2 LINE L2 2978 3015 -257 192 111 0 0 chr12 44242868 44242904 -99543551 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 885 19 0 0 chr12 44242906 44243010 -99543445 - L1PA4 LINE L1 -3 6152 6049 197 322 86 118 chr12 44243010 44243224 -99543231 + L2 LINE L2 3016 3224 -48 5206 168 35 29 chr12 44243733 44245098 -99541357 - L1PA16 LINE L1 -9 6157 4784 381 102 0 0 chr12 44245098 44245157 -99541298 + (TG)n Simple_repeat Simple_repeat 2 60 0 5206 168 35 29 chr12 44245157 44245832 -99540623 - L1PA16 LINE L1 -1382 4784 4114 22 70 0 0 chr12 44246029 44246072 -99540383 + AT_rich Low_complexity Low_complexity 1 43 0 5517 291 100 29 chr12 44246197 44247630 -99538825 + L2 LINE L2 610 1940 -1373 2264 111 45 3 chr12 44247630 44247989 -99538466 - THE1C LTR MaLR -1 374 1 5517 291 100 29 chr12 44247989 44249060 -99537395 + L2 LINE L2 1940 3309 -4 26 0 0 0 chr12 44249540 44249566 -99536889 + AT_rich Low_complexity Low_complexity 1 26 0 639 147 46 0 chr12 44249666 44249775 -99536680 + MER46A DNA MER2_type 1 114 -122 840 283 115 56 chr12 44250188 44250598 -99535857 - MLT1J2 LTR MaLR -2 448 15 25 0 0 0 chr12 44250684 44250709 -99535746 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 44250812 44250837 -99535618 + AT_rich Low_complexity Low_complexity 1 25 0 30364 110 10 22 chr12 44250837 44253861 -99532594 - L1PA7 LINE L1 -4 6465 3407 324 0 0 0 chr12 44253861 44253897 -99532558 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1719 134 0 0 chr12 44253903 44254141 -99532314 - AluSc SINE Alu -39 270 33 30364 110 10 22 chr12 44254141 44257556 -99528899 - L1PA7 LINE L1 -3067 3402 9 297 338 101 0 chr12 44257903 44258042 -99528413 + L2 LINE L2 2715 2867 -447 21 36 0 0 chr12 44258429 44258457 -99527998 + AT_rich Low_complexity Low_complexity 1 28 0 334 177 85 146 chr12 44260880 44261044 -99525411 + MER5C DNA MER1_type 170 323 -1 828 252 68 9 chr12 44261634 44261856 -99524599 + MLT1C LTR MaLR 225 459 -8 337 319 28 52 chr12 44261956 44262058 -99524397 + MIR SINE MIR 18 121 -141 2554 58 0 3 chr12 44262058 44262366 -99524089 - AluY SINE Alu -4 307 1 337 319 28 52 chr12 44262366 44262514 -99523941 + MIR SINE MIR 121 262 0 226 310 42 70 chr12 44263074 44263216 -99523239 - L2 LINE L2 -1 3312 3175 183 333 227 0 chr12 44263584 44263659 -99522796 + L2 LINE L2 2250 2341 -973 2082 142 3 0 chr12 44263853 44264163 -99522292 + AluSx SINE Alu 2 312 0 265 305 105 0 chr12 44264407 44264503 -99521952 + MIR SINE MIR 43 146 -63 188 35 35 0 chr12 44266016 44266045 -99520410 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 714 194 33 0 chr12 44266310 44266490 -99519965 - L1MDa LINE L1 -2756 3784 3599 4566 155 39 53 chr12 44266494 44267191 -99519264 + L1MA4 LINE L1 4600 5305 -995 273 29 0 0 chr12 44267191 44267225 -99519230 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4566 155 39 53 chr12 44267225 44267565 -99518890 + L1MA4 LINE L1 5305 5648 -652 731 186 0 0 chr12 44267565 44267706 -99518749 + FLAM_C SINE Alu 1 141 0 4566 155 39 53 chr12 44267706 44268362 -99518093 + L1MA4 LINE L1 5648 6295 -5 3811 250 67 22 chr12 44268373 44268726 -99517729 - L1M4 LINE L1 -810 5730 5394 597 28 0 0 chr12 44268726 44268797 -99517658 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 3811 250 67 22 chr12 44268797 44269568 -99516887 - L1M4 LINE L1 -1146 5394 4453 2019 145 0 19 chr12 44269568 44269885 -99516570 - AluSx SINE Alu -1 311 1 3811 250 67 22 chr12 44269885 44270439 -99516016 - L1M4 LINE L1 -2087 4453 3925 1163 269 35 43 chr12 44270454 44271286 -99515169 - L1MDa LINE L1 -3571 2969 2142 1518 237 34 36 chr12 44271286 44271733 -99514722 + MLT1D LTR MaLR 1 446 -59 1659 187 9 38 chr12 44271733 44272048 -99514407 + AluSx SINE Alu 1 306 -6 2192 111 0 0 chr12 44272055 44272344 -99514111 + AluSx SINE Alu 1 289 -23 236 167 0 0 chr12 44272350 44272386 -99514069 + (TG)n Simple_repeat Simple_repeat 1 36 0 459 238 12 6 chr12 44272386 44272554 -99513901 + (TA)n Simple_repeat Simple_repeat 2 170 0 420 157 0 0 chr12 44272554 44272624 -99513831 + MLT1D LTR MaLR 557 626 0 2765 230 84 41 chr12 44272624 44273712 -99512743 - L1MDa LINE L1 -4394 2146 1013 723 93 0 0 chr12 44273912 44274009 -99512446 + HY3 scRNA scRNA 1 97 -4 317 43 21 0 chr12 44274009 44274056 -99512399 + (CAA)n Simple_repeat Simple_repeat 1 48 0 301 377 51 23 chr12 44274057 44274232 -99512223 - L1MDa LINE L1 -6345 195 16 * 705 296 79 95 chr12 44274230 44274740 -99511715 - L1MEd LINE L1 -4969 1150 633 258 32 0 0 chr12 44274740 44274771 -99511684 + (TG)n Simple_repeat Simple_repeat 2 32 0 705 296 79 95 chr12 44274771 44275478 -99510977 - L1MEd LINE L1 -5486 633 19 1802 198 29 63 chr12 44275508 44275997 -99510458 - MLT1D LTR MaLR 0 505 34 569 251 59 26 chr12 44276049 44276320 -99510135 + L1MDa LINE L1 2142 2421 -4119 609 183 42 8 chr12 44276320 44276440 -99510015 + MER20 DNA MER1_type 96 219 0 189 0 0 0 chr12 44277714 44277735 -99508720 + (TC)n Simple_repeat Simple_repeat 2 22 0 204 265 0 0 chr12 44278477 44278526 -99507929 + C-rich Low_complexity Low_complexity 128 176 0 21 0 0 0 chr12 44278959 44278980 -99507475 + AT_rich Low_complexity Low_complexity 1 21 0 25 83 0 0 chr12 44280906 44280966 -99505489 + AT_rich Low_complexity Low_complexity 1 60 0 212 128 43 0 chr12 44281119 44281166 -99505289 + T-rich Low_complexity Low_complexity 2 50 0 372 301 114 0 chr12 44283294 44283417 -99503038 + MIR SINE MIR 6 142 -120 263 352 86 13 chr12 44283669 44283902 -99502553 - L2 LINE L2 -219 3053 2804 1977 236 32 12 chr12 44283955 44284450 -99502005 + MLT1D LTR MaLR 1 505 0 2483 223 17 17 chr12 44284463 44285056 -99501399 + MLT1D-int LTR MaLR 14 606 -765 1267 237 61 131 chr12 44285193 44285829 -99500626 + MLT1D-int LTR MaLR 673 1264 -107 2858 119 53 12 chr12 44285867 44286378 -99500077 - L1MA8 LINE L1 -4 7706 7175 466 185 0 33 chr12 44286378 44286470 -99499985 + L1M2 LINE L1 5688 5776 -515 * 8657 163 22 39 chr12 44286465 44286737 -99499718 - L1MA8 LINE L1 -1526 6039 5764 2141 130 0 0 chr12 44286737 44287037 -99499418 - AluSx SINE Alu -7 305 6 8657 163 22 39 chr12 44287037 44288609 -99497846 - L1MA8 LINE L1 -1801 5764 4227 1280 186 73 102 chr12 44288609 44288981 -99497474 - MLT1A1 LTR MaLR -4 361 1 8657 163 22 39 chr12 44288981 44289043 -99497412 - L1MA8 LINE L1 -3338 4227 4165 4290 16 0 0 chr12 44289060 44289549 -99496906 - L1HS LINE L1 -3 6152 5664 3833 7 0 0 chr12 44289547 44290046 -99496409 + L1P1 LINE L1 5188 5686 -469 * 3363 230 40 72 chr12 44290045 44291717 -99494738 - L1MA8 LINE L1 -3390 4175 2451 * 2376 42 0 3 chr12 44291717 44292005 -99494450 + L1PA7 LINE L1 5853 6139 -15 3363 230 40 72 chr12 44292005 44292292 -99494163 - L1MA8 LINE L1 -5114 2451 2395 3519 108 10 0 chr12 44292292 44292801 -99493654 - MER75 DNA T2_type 0 514 1 3363 230 40 72 chr12 44292801 44293177 -99493278 - L1MA8 LINE L1 -5170 2395 2008 2410 234 39 65 chr12 44293177 44293989 -99492466 - L1MA8 LINE L1 -6238 1251 461 254 244 117 0 chr12 44294004 44294119 -99492336 + MLT1D-int LTR MaLR 1243 1730 -5 1843 198 65 46 chr12 44294125 44294621 -99491834 + MLT1D LTR MaLR 1 505 0 2128 133 3 0 chr12 44295406 44295707 -99490748 - AluSx SINE Alu -10 302 1 27 0 0 0 chr12 44296098 44296125 -99490330 + AT_rich Low_complexity Low_complexity 1 27 0 474 264 226 5 chr12 44296692 44296900 -99489555 + MIR SINE MIR 9 262 0 182 347 37 63 chr12 44297758 44297948 -99488507 + L2 LINE L2 2943 3127 -145 1706 258 25 44 chr12 44297958 44298702 -99487753 + L2 LINE L2 2543 3264 -49 242 365 62 14 chr12 44298764 44298909 -99487546 + L2 LINE L2 3117 3268 -4 746 286 15 5 chr12 44299374 44299573 -99486882 + L3 LINE CR1 1113 1313 -264 348 314 46 26 chr12 44299573 44299726 -99486729 - MER5A DNA MER1_type 0 189 34 * 468 250 65 8 chr12 44299624 44299748 -99486707 + MER5B DNA MER1_type 48 178 0 965 177 84 4 chr12 44299755 44299992 -99486463 + MER33 DNA MER1_type 1 256 -68 351 0 0 0 chr12 44300096 44300135 -99486320 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 190 346 84 28 chr12 44300142 44300249 -99486206 + L3 LINE CR1 1441 1553 -24 23 33 0 0 chr12 44304259 44304289 -99482166 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 44304330 44304351 -99482104 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr12 44304510 44304554 -99481901 + AT_rich Low_complexity Low_complexity 1 44 0 2808 225 71 20 chr12 44304644 44305650 -99480805 - L1ME2 LINE L1 -11 6153 5086 1771 154 4 0 chr12 44306663 44306930 -99479525 - AluSx SINE Alu -12 300 33 23 0 0 0 chr12 44307231 44307254 -99479201 + AT_rich Low_complexity Low_complexity 1 23 0 661 136 88 16 chr12 44309168 44309293 -99477162 + MER3 DNA MER1_type 55 188 -21 27 0 0 0 chr12 44309788 44309815 -99476640 + AT_rich Low_complexity Low_complexity 1 27 0 885 263 52 40 chr12 44310019 44310441 -99476014 - L1ME2 LINE L1 -10 6154 5728 846 206 71 145 chr12 44310441 44310674 -99475781 + MLT1A2 LTR MaLR 1 195 -179 1956 163 0 0 chr12 44310674 44310974 -99475481 - AluJb SINE Alu -12 300 1 846 206 71 145 chr12 44310974 44311133 -99475322 + MLT1A2 LTR MaLR 195 364 -10 1587 226 61 56 chr12 44311133 44311638 -99474817 - L1ME2 LINE L1 -479 5685 5170 1356 197 144 40 chr12 44311638 44312060 -99474395 - MLT1C LTR MaLR -1 466 1 1587 226 61 56 chr12 44312060 44312541 -99473914 - L1ME2 LINE L1 -994 5170 4693 665 124 0 16 chr12 44312558 44312679 -99473776 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 203 263 0 13 chr12 44366276 44366352 -99420103 + (TA)n Simple_repeat Simple_repeat 1 75 0 192 270 45 54 chr12 44367089 44367200 -99419255 - L2 LINE L2 -5 3308 3199 678 205 103 22 chr12 44368477 44368662 -99417793 + MER58C DNA MER1_type 1 200 -15 752 255 145 57 chr12 44368734 44369204 -99417251 - MLT1J LTR MaLR 0 511 1 245 87 0 22 chr12 44371437 44371483 -99414972 + (CAT)n Simple_repeat Simple_repeat 1 45 0 6653 98 17 29 chr12 44372431 44373527 -99412928 + L1MA3 LINE L1 5211 6294 -11 204 167 0 24 chr12 44373877 44373919 -99412536 + MIR SINE MIR 35 75 -187 259 266 87 71 chr12 44373993 44374177 -99412278 + MIR SINE MIR 69 255 -7 2337 70 0 3 chr12 44375484 44375784 -99410671 - AluY SINE Alu -12 299 1 186 103 0 0 chr12 44376678 44376707 -99409748 + (TG)n Simple_repeat Simple_repeat 2 30 0 876 212 16 11 chr12 44378519 44378703 -99407752 + MIR SINE MIR 37 221 -41 202 276 58 23 chr12 44378853 44378940 -99407515 - MIR SINE MIR -99 163 74 1217 220 32 125 chr12 44379057 44379648 -99406807 - L1ME3A LINE L1 -264 5906 5371 21 0 0 0 chr12 44379655 44379676 -99406779 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 44380637 44380665 -99405790 + AT_rich Low_complexity Low_complexity 1 28 0 508 269 130 50 chr12 44381220 44381543 -99404912 - L1MC4a LINE L1 -307 5814 5552 23 33 0 0 chr12 44381942 44381972 -99404483 + AT_rich Low_complexity Low_complexity 1 30 0 1484 144 148 0 chr12 44382873 44383136 -99403319 - AluSx SINE Alu 0 302 1 23 33 0 0 chr12 44383218 44383248 -99403207 + AT_rich Low_complexity Low_complexity 1 30 0 494 281 157 0 chr12 44383896 44384049 -99402406 - MER5A DNA MER1_type 0 189 13 315 280 30 10 chr12 44384244 44384344 -99402111 - MIR SINE MIR -118 144 43 216 0 0 0 chr12 44385469 44385493 -99400962 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 198 365 40 8 chr12 44386188 44386314 -99400141 - L2 LINE L2 -213 3059 2930 1131 260 44 29 chr12 44386480 44386865 -99399590 - L2 LINE L2 -690 2624 2234 3409 147 29 27 chr12 44386941 44387568 -99398887 - L1PB4 LINE L1 -3 6153 5526 2105 94 3 36 chr12 44387569 44387899 -99398556 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 44388110 44388131 -99398324 + AT_rich Low_complexity Low_complexity 1 21 0 425 294 79 56 chr12 44388139 44388479 -99397976 - L1MC4a LINE L1 -1155 4991 4644 26 64 0 0 chr12 44388602 44388649 -99397806 + AT_rich Low_complexity Low_complexity 1 47 0 209 351 117 50 chr12 44388673 44389195 -99397260 - L2 LINE L2 -2459 855 299 396 260 153 27 chr12 44389207 44389357 -99397098 - MLT1H LTR MaLR -2 547 379 291 319 66 11 chr12 44389570 44389661 -99396794 + L2 LINE L2 3202 3297 -16 215 114 23 0 chr12 44390157 44390201 -99396254 + (TG)n Simple_repeat Simple_repeat 2 46 0 292 292 62 18 chr12 44390546 44390659 -99395796 - L1ME LINE L1 -522 5599 5482 1909 336 117 48 chr12 44390711 44393243 -99393212 - L2 LINE L2 -427 2887 181 294 221 37 147 chr12 44394481 44394617 -99391838 - MIR SINE MIR 0 262 142 676 256 192 40 chr12 44394853 44395307 -99391148 - L2 LINE L2 0 3313 2794 245 304 49 29 chr12 44395719 44395821 -99390634 + MIR SINE MIR 33 136 -126 1588 106 18 0 chr12 44396166 44396392 -99390063 - MER30 DNA MER1_type 0 230 1 6003 138 26 20 chr12 44400229 44401450 -99385005 + L1MA9 LINE L1 5087 6301 -11 180 77 0 0 chr12 44401584 44401610 -99384845 + (TC)n Simple_repeat Simple_repeat 1 26 0 272 305 12 12 chr12 44402344 44402426 -99384029 - MIR SINE MIR -178 84 3 1947 139 0 7 chr12 44402497 44402629 -99383826 + AluSx SINE Alu 2 133 -179 423 0 0 0 chr12 44402629 44402676 -99383779 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1947 139 0 7 chr12 44402676 44402837 -99383618 + AluSx SINE Alu 133 293 -19 24 0 0 0 chr12 44403414 44403438 -99383017 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr12 44403491 44403515 -99382940 + (TG)n Simple_repeat Simple_repeat 2 25 0 456 325 109 60 chr12 44403559 44403929 -99382526 + L2 LINE L2 2123 2522 -792 2512 56 0 3 chr12 44403929 44404235 -99382220 - AluY SINE Alu -6 305 1 456 325 109 60 chr12 44404235 44404332 -99382123 + L2 LINE L2 2522 2613 -701 2865 9 0 0 chr12 44405520 44405836 -99380619 + AluYb8 SINE Alu 1 316 -2 21 0 0 0 chr12 44406212 44406233 -99380222 + AT_rich Low_complexity Low_complexity 1 21 0 458 298 147 0 chr12 44406538 44406729 -99379726 - MLT1K LTR MaLR -286 302 84 191 315 34 47 chr12 44406855 44407004 -99379451 + L2 LINE L2 2852 2998 -274 573 282 6 44 chr12 44407294 44407475 -99378980 + MER20B DNA MER1_type 3 176 -607 1858 114 0 0 chr12 44408682 44408927 -99377528 + AluSg SINE Alu 38 282 -28 704 167 65 0 chr12 44409488 44409626 -99376829 + MIR SINE MIR 66 212 -50 539 347 113 33 chr12 44410178 44410752 -99375703 - L3 LINE CR1 -154 1423 804 276 248 134 34 chr12 44410763 44410912 -99375543 - L1ME4a LINE L1 -2 6119 5956 23 0 0 0 chr12 44410973 44410996 -99375459 + AT_rich Low_complexity Low_complexity 1 23 0 361 203 13 13 chr12 44411272 44411349 -99375106 - MIR SINE MIR -6 256 180 497 304 7 7 chr12 44411349 44411487 -99374968 + MIR SINE MIR 2 139 -123 276 322 129 0 chr12 44411521 44411692 -99374763 - MIR SINE MIR -68 194 2 240 308 88 11 chr12 44413023 44413114 -99373341 + L2 LINE L2 2964 3061 -211 2729 82 5 0 chr12 44413206 44413586 -99372869 - L1PA8 LINE L1 0 6172 5791 460 186 186 43 chr12 44413872 44414012 -99372443 - MER63A DNA MER1_type 0 210 51 22 80 0 0 chr12 44415955 44416005 -99370450 + AT_rich Low_complexity Low_complexity 1 50 0 240 35 0 0 chr12 44417202 44417231 -99369224 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 44417678 44417706 -99368749 + AT_rich Low_complexity Low_complexity 1 28 0 225 140 160 0 chr12 44417706 44417756 -99368699 - L1 LINE L1 -1315 4831 4774 378 249 156 29 chr12 44418104 44418356 -99368099 - L1ME4a LINE L1 -756 5406 5316 566 271 107 29 chr12 44419128 44419578 -99366877 - L1ME4a LINE L1 -1312 4834 4350 21 0 0 0 chr12 44419959 44419980 -99366475 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 44420649 44420671 -99365784 + AT_rich Low_complexity Low_complexity 1 22 0 1708 292 117 7 chr12 44420958 44421722 -99364733 - L1MC4 LINE L1 -8 8034 7187 331 283 57 0 chr12 44422621 44422727 -99363728 + L2 LINE L2 3200 3311 -2 781 285 47 4 chr12 44422825 44423060 -99363395 - MIR SINE MIR -10 252 8 2269 103 0 6 chr12 44425305 44425616 -99360839 + AluSc SINE Alu 1 309 0 619 282 115 34 chr12 44425632 44426015 -99360440 - L1M4 LINE L1 -1191 4955 4542 681 259 84 0 chr12 44426022 44426319 -99360136 - L1M4 LINE L1 -1659 4487 4166 297 294 151 8 chr12 44428090 44428216 -99358239 + L3 LINE CR1 1361 1504 -73 463 295 107 37 chr12 44428354 44428598 -99357857 - MIR SINE MIR -1 261 1 405 256 301 10 chr12 44429043 44429242 -99357213 - MIR SINE MIR 0 262 6 506 292 128 22 chr12 44430250 44430476 -99355979 - MIR SINE MIR -11 251 2 193 297 142 26 chr12 44430786 44430941 -99355514 - MIR SINE MIR 0 262 90 699 298 119 24 chr12 44431409 44431872 -99354583 - L1ME4a LINE L1 -157 5964 5458 1969 274 120 52 chr12 44432102 44433067 -99353388 + L2 LINE L2 1594 2624 -690 1858 121 0 0 chr12 44433073 44433346 -99353109 - L1PB1 LINE L1 -97 6054 5782 297 0 0 0 chr12 44433346 44433379 -99353076 + (TA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr12 44433395 44433424 -99353031 + (TG)n Simple_repeat Simple_repeat 2 30 0 241 49 0 0 chr12 44433424 44433465 -99352990 + LTR66 LTR ERVL 398 438 -172 258 32 0 0 chr12 44433466 44433497 -99352958 + (TA)n Simple_repeat Simple_repeat 1 31 0 12498 161 126 8 chr12 44433632 44436377 -99350078 - L1PBa LINE L1 -3788 3074 6 8486 234 57 34 chr12 44436397 44437471 -99348984 - L1MDa LINE L1 -844 5696 4649 12517 93 6 2 chr12 44437471 44440064 -99346391 - L1PA8 LINE L1 -4 6168 3565 8486 234 57 34 chr12 44440064 44444438 -99342017 - L1MDa LINE L1 -1891 4649 18 263 311 22 11 chr12 44445369 44445459 -99340996 - MIR3 SINE MIR -11 197 107 280 319 33 0 chr12 44445754 44445845 -99340610 - MIR SINE MIR -110 152 59 378 323 61 0 chr12 44446003 44446102 -99340353 - MER91C DNA MER1_type -35 105 1 29 0 0 0 chr12 44446387 44446416 -99340039 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 44447741 44447764 -99338691 + AT_rich Low_complexity Low_complexity 1 23 0 243 218 0 0 chr12 44449249 44449304 -99337151 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 869 224 22 0 chr12 44450287 44450466 -99335989 - Tigger2a DNA MER2_type 0 444 262 198 91 0 0 chr12 44450466 44450499 -99335956 + (TTA)n Simple_repeat Simple_repeat 3 35 0 43887 38 3 1 chr12 44450499 44456626 -99329829 - L1PA4 LINE L1 -18 6137 1 1295 160 4 44 chr12 44456689 44456939 -99329516 - Tigger2a DNA MER2_type -194 240 1 271 216 0 0 chr12 44456943 44456994 -99329461 + MIR SINE MIR 211 261 -1 302 277 18 27 chr12 44457415 44457527 -99328928 - MLT1L LTR MaLR 0 615 505 506 266 8 0 chr12 44457715 44457839 -99328616 - MLT1L LTR MaLR -339 276 152 1107 224 36 63 chr12 44457875 44458030 -99328425 - MER58B DNA MER1_type -2094 326 168 1947 148 3 0 chr12 44458030 44458335 -99328120 - AluSx SINE Alu -6 306 1 1107 224 36 63 chr12 44458335 44458514 -99327941 - MER58B DNA MER1_type -2252 168 1 21 0 0 0 chr12 44459024 44459045 -99327410 + AT_rich Low_complexity Low_complexity 1 21 0 3299 131 37 35 chr12 44459045 44459669 -99326786 - L1MA9 LINE L1 -73 6239 5615 195 301 110 96 chr12 44459685 44459904 -99326551 - L2 LINE L2 -19 3253 3032 27 103 0 0 chr12 44460819 44460916 -99325539 + AT_rich Low_complexity Low_complexity 1 97 0 34 55 0 0 chr12 44461014 44461069 -99325386 + AT_rich Low_complexity Low_complexity 1 55 0 25 99 0 0 chr12 44461167 44461248 -99325207 + AT_rich Low_complexity Low_complexity 1 81 0 2546 42 3 0 chr12 44461635 44461942 -99324513 + AluY SINE Alu 1 308 -3 30 59 0 0 chr12 44462149 44462200 -99324255 + AT_rich Low_complexity Low_complexity 1 51 0 233 311 76 23 chr12 44462932 44463103 -99323352 + L1MDa LINE L1 1819 2028 -873 1175 277 116 19 chr12 44463490 44464119 -99322336 + L1MDa LINE L1 2536 3225 -3315 305 129 0 16 chr12 44464152 44464214 -99322241 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 11401 208 35 11 chr12 44464214 44467939 -99318516 - L1MB1 LINE L1 0 6168 2348 1282 128 36 9 chr12 44467944 44468163 -99318292 + AluSg/x SINE Alu 87 311 -1 237 162 0 0 chr12 44468163 44468200 -99318255 + Alu SINE Alu 1 37 -265 2618 256 50 45 chr12 44468249 44469857 -99316598 - L1M4c LINE L1 -3964 2599 842 212 219 0 27 chr12 44470360 44470433 -99316022 + CT-rich Low_complexity Low_complexity 2 72 0 514 274 51 34 chr12 44470626 44470801 -99315654 - MER5B DNA MER1_type 0 178 1 444 293 179 0 chr12 44470817 44470957 -99315498 + MER5A DNA MER1_type 9 173 -16 22 0 0 0 chr12 44471806 44471828 -99314627 + AT_rich Low_complexity Low_complexity 1 22 0 4786 91 9 1 chr12 44471935 44472605 -99313850 - L1PA14 LINE L1 -9 6152 5478 4704 161 7 20 chr12 44472605 44473534 -99312921 - L1PA14 LINE L1 -936 5210 4295 3671 172 5 3 chr12 44473538 44474177 -99312278 - L1PA16 LINE L1 -9 6157 5518 444 267 27 62 chr12 44474655 44474740 -99311715 - MER5B DNA MER1_type -34 144 65 2419 64 0 10 chr12 44474740 44475037 -99311418 - AluY SINE Alu -17 294 1 444 267 27 62 chr12 44475037 44475097 -99311358 - MER5B DNA MER1_type -113 65 4 213 333 56 65 chr12 44475355 44475463 -99310992 + L2 LINE L2 3109 3215 -57 1751 157 36 0 chr12 44475482 44475762 -99310693 + AluJb SINE Alu 5 294 -18 21 36 0 0 chr12 44478835 44478863 -99307592 + AT_rich Low_complexity Low_complexity 1 28 0 253 319 55 0 chr12 44478988 44479079 -99307376 + MER91C DNA MER1_type 9 104 -36 811 316 71 27 chr12 44480010 44480377 -99306078 + LTR33 LTR ERVL 44 426 -95 345 352 106 0 chr12 44480471 44480613 -99305842 + L2 LINE L2 3116 3272 0 24 0 0 0 chr12 44481707 44481731 -99304724 + AT_rich Low_complexity Low_complexity 1 24 0 797 181 0 0 chr12 44481843 44481976 -99304479 + FLAM_C SINE Alu 1 133 0 605 259 6 11 chr12 44482245 44482419 -99304036 - MER69A DNA AcHobo -2 175 3 21 36 0 0 chr12 44483165 44483193 -99303262 + AT_rich Low_complexity Low_complexity 1 28 0 312 83 0 0 chr12 44484678 44484726 -99301729 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chr12 44484726 44484765 -99301690 + (TG)n Simple_repeat Simple_repeat 2 40 0 462 335 141 24 chr12 44485458 44485706 -99300749 + L3 LINE CR1 1293 1569 -8 363 351 33 33 chr12 44485706 44485857 -99300598 + L2 LINE L2 3104 3254 -18 655 216 142 25 chr12 44486432 44486594 -99299861 - MER5A DNA MER1_type 0 189 9 1027 227 92 59 chr12 44486596 44487075 -99299380 - MLT1H1 LTR MaLR -7 548 9 376 308 51 0 chr12 44487377 44487494 -99298961 - MER5B DNA MER1_type -55 123 1 298 265 124 32 chr12 44488650 44488835 -99297620 - MLT1K LTR MaLR -13 575 374 410 286 53 41 chr12 44489574 44489745 -99296710 - MIR SINE MIR -56 206 34 2164 117 10 0 chr12 44491191 44491489 -99294966 - AluSq SINE Alu -12 301 1 188 340 56 28 chr12 44492078 44492222 -99294233 + L3b LINE CR1 1249 1396 -187 655 316 127 41 chr12 44493822 44494671 -99291784 - L2 LINE L2 0 3313 2395 1033 333 180 26 chr12 44495341 44496712 -99289743 - L2 LINE L2 0 3272 1705 2254 161 14 77 chr12 44497738 44498235 -99288220 + MLT1C LTR MaLR 2 467 0 3404 153 15 21 chr12 44498446 44499055 -99287400 + MER6A DNA MER2_type 1 605 0 1176 154 0 81 chr12 44500029 44500263 -99286192 - AluJb SINE Alu -15 297 83 831 200 7 0 chr12 44500460 44500610 -99285845 - AluJo SINE Alu -159 153 3 258 26 0 0 chr12 44500718 44500756 -99285699 - AluY SINE Alu -1 299 262 615 200 12 18 chr12 44500834 44501004 -99285451 + CT-rich Low_complexity Low_complexity 3 171 0 2193 185 88 29 chr12 44501435 44501476 -99284979 - MLT2B1 LTR ERVL 0 520 483 405 39 0 0 chr12 44501476 44501527 -99284928 + (TG)n Simple_repeat Simple_repeat 2 52 0 2193 185 88 29 chr12 44501527 44501976 -99284479 - MLT2B1 LTR ERVL -37 483 1 14124 146 29 4 chr12 44502575 44504934 -99281521 - Tigger1 DNA MER2_type 0 2418 1 462 259 22 30 chr12 44505238 44505373 -99281082 - L2 LINE L2 0 3313 3180 516 245 170 14 chr12 44505516 44505663 -99280792 + MER5A DNA MER1_type 11 180 -9 424 305 110 6 chr12 44505822 44505986 -99280469 + MER5A DNA MER1_type 8 188 -1 1313 140 4 48 chr12 44506138 44506367 -99280088 - MER20 DNA MER1_type 0 219 1 443 299 86 20 chr12 44507417 44507614 -99278841 + MIR SINE MIR 51 260 -2 22 0 0 0 chr12 44508137 44508159 -99278296 + AT_rich Low_complexity Low_complexity 1 22 0 41890 40 25 1 chr12 44508603 44514344 -99272111 + L1PA3 LINE L1 1 5880 -275 838 289 77 16 chr12 44514554 44514865 -99271590 + L2 LINE L2 1030 1359 -1955 2072 117 17 3 chr12 44516270 44516570 -99269885 - AluSx SINE Alu -8 304 1 289 344 26 53 chr12 44517079 44517268 -99269187 - MIR SINE MIR -61 201 18 182 194 0 0 chr12 44517434 44517470 -99268985 - L2 LINE L2 -1062 2252 2217 2373 82 3 16 chr12 44519224 44519530 -99266925 + AluY SINE Alu 1 302 -9 7638 27 0 0 chr12 44519534 44520452 -99266003 + L1PA3 LINE L1 5234 6188 0 228 54 27 0 chr12 44520452 44520489 -99265966 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 35 0 0 0 chr12 44520804 44520839 -99265616 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr12 44521760 44521811 -99264644 + AT_rich Low_complexity Low_complexity 1 51 0 791 355 102 14 chr12 44522443 44523172 -99263283 + L2 LINE L2 1242 2034 -1280 676 268 114 5 chr12 44523172 44523392 -99263063 - LTR67 LTR ERVL 0 557 314 801 319 136 26 chr12 44523649 44524347 -99262108 + L2 LINE L2 1976 2750 -564 380 385 94 50 chr12 44524638 44525022 -99261433 + L2 LINE L2 2856 3256 -16 22 0 0 0 chr12 44525534 44525556 -99260899 + AT_rich Low_complexity Low_complexity 1 22 0 272 384 79 0 chr12 44526062 44526226 -99260229 + L2 LINE L2 2686 2862 -452 * 364 230 58 0 chr12 44526212 44526299 -99260156 + MIR3 SINE MIR 109 200 -8 190 231 21 66 chr12 44526881 44527037 -99259418 - L2 LINE L2 -4 3309 3119 259 343 0 0 chr12 44527852 44527922 -99258533 + L2 LINE L2 3244 3313 0 245 245 0 98 chr12 44527943 44528045 -99258410 + MER103 DNA DNA 73 164 -2 188 268 126 63 chr12 44528324 44528451 -99258004 - L3 LINE CR1 -157 1420 1286 2023 139 12 38 chr12 44529341 44529686 -99256769 - MER1B DNA MER1_type -1 336 1 10248 227 41 40 chr12 44530043 44534290 -99252165 - L1 LINE L1 -2593 4255 2 392 271 0 74 chr12 44534330 44534452 -99252003 + MER58A DNA MER1_type 1 113 0 261 209 0 45 chr12 44534452 44534513 -99251942 + MER58A DNA MER1_type 167 224 0 25 0 0 0 chr12 44534737 44534762 -99251693 + AT_rich Low_complexity Low_complexity 1 25 0 192 291 93 101 chr12 44534834 44535081 -99251374 - L2 LINE L2 -219 3053 2809 215 304 25 13 chr12 44535157 44535236 -99251219 + MIR3 SINE MIR 111 190 -18 279 0 0 0 chr12 44537012 44537043 -99249412 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 510 345 31 16 chr12 44539303 44539494 -99246961 - MIR3 SINE MIR -11 197 4 277 235 42 12 chr12 44539898 44540065 -99246390 + GA-rich Low_complexity Low_complexity 1 172 0 2449 213 84 26 chr12 44540340 44541034 -99245421 - MER50 LTR ERV1 0 734 1 607 243 21 14 chr12 44541270 44541414 -99245041 + MER20 DNA MER1_type 2 146 -73 333 138 12 100 chr12 44541535 44541615 -99244840 + MER20 DNA MER1_type 147 219 0 8053 82 10 9 chr12 44542263 44542968 -99243487 - L1P LINE L1 -744 5402 4694 1921 87 0 4 chr12 44542968 44543221 -99243234 - AluY SINE Alu -2 309 58 8053 82 10 9 chr12 44543221 44543675 -99242780 - L1P LINE L1 -1452 4694 4242 5813 49 3 0 chr12 44543675 44544389 -99242066 + L1PA7 LINE L1 5437 6152 -2 21 0 0 0 chr12 44544857 44544878 -99241577 + AT_rich Low_complexity Low_complexity 1 21 0 649 248 0 20 chr12 44547305 44547458 -99238997 - MLT1E LTR MaLR -443 150 1 649 280 46 23 chr12 44548494 44548712 -99237743 + MIR SINE MIR 40 262 0 2054 188 82 17 chr12 44548721 44549195 -99237260 + MLT1D LTR MaLR 1 505 0 1312 219 16 60 chr12 44550571 44550625 -99235830 - MLT1A2 LTR MaLR -2 372 317 1660 135 135 23 chr12 44550625 44550928 -99235527 - MER1B DNA MER1_type 0 337 1 1312 219 16 60 chr12 44550928 44551086 -99235369 - MLT1A2 LTR MaLR -57 317 180 300 27 0 0 chr12 44551086 44551123 -99235332 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1312 219 16 60 chr12 44551123 44551274 -99235181 - MLT1A2 LTR MaLR -194 180 24 1929 142 17 7 chr12 44551278 44551573 -99234882 + AluSx SINE Alu 1 298 -14 191 256 85 49 chr12 44552018 44552100 -99234355 + MIR SINE MIR 67 151 -111 282 116 0 0 chr12 44552636 44552679 -99233776 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 2283 79 41 0 chr12 44552806 44552928 -99233527 + AluSx SINE Alu 1 117 -195 387 0 0 0 chr12 44552928 44552971 -99233484 + (CA)n Simple_repeat Simple_repeat 2 44 0 2283 79 41 0 chr12 44552971 44553139 -99233316 + AluSx SINE Alu 117 303 -9 198 0 0 0 chr12 44553139 44553161 -99233294 + (TA)n Simple_repeat Simple_repeat 2 23 0 321 323 0 0 chr12 44554433 44554529 -99231926 - MIR SINE MIR -114 148 53 605 269 29 17 chr12 44554840 44555015 -99231440 - MIR SINE MIR -22 240 64 1674 183 42 30 chr12 44555174 44555508 -99230947 + MER44D DNA MER2_type 1 608 -1 715 272 41 10 chr12 44555530 44555725 -99230730 + MIR SINE MIR 30 230 -32 221 326 137 0 chr12 44555755 44555850 -99230605 - L2 LINE L2 -32 3240 3133 318 337 71 12 chr12 44556052 44556221 -99230234 + MIR SINE MIR 67 245 -17 342 368 144 21 chr12 44556302 44556887 -99229568 + L2 LINE L2 2381 3036 -236 546 57 0 0 chr12 44557221 44557291 -99229164 + (TA)n Simple_repeat Simple_repeat 1 70 0 286 284 71 13 chr12 44558683 44558838 -99227617 - L1ME LINE L1 -455 5666 5503 1132 192 8 31 chr12 44558924 44558971 -99227484 - L1MB1 LINE L1 -2 6166 6119 2170 106 3 7 chr12 44558971 44559274 -99227181 - AluSx SINE Alu -10 302 1 1132 192 8 31 chr12 44559274 44559486 -99226969 - L1MB1 LINE L1 -49 6119 5913 206 319 15 108 chr12 44559765 44559877 -99226578 - MIR SINE MIR -58 204 118 2078 137 3 3 chr12 44559877 44560184 -99226271 + AluSx SINE Alu 1 307 -5 206 319 15 108 chr12 44560184 44560275 -99226180 - MIR SINE MIR -144 118 20 204 231 0 0 chr12 44560756 44560795 -99225660 + T-rich Low_complexity Low_complexity 2 40 0 482 295 62 33 chr12 44561447 44561657 -99224798 + MIR SINE MIR 34 249 -13 677 350 44 18 chr12 44561874 44562257 -99224198 - L2 LINE L2 -372 2942 2550 1283 179 73 0 chr12 44562713 44563015 -99223440 + MER33 DNA MER1_type 1 324 0 498 360 68 31 chr12 44564162 44564550 -99221905 + L2 LINE L2 2865 3264 -8 16013 83 17 0 chr12 44564563 44566917 -99219538 + L1PA7 LINE L1 3088 5481 -673 942 68 0 0 chr12 44566907 44567025 -99219430 + L1PA7 LINE L1 5811 5928 -226 * 5130 70 1 5 chr12 44567029 44567703 -99218752 + L1PA7 LINE L1 5483 6154 0 207 171 0 0 chr12 44568781 44568816 -99217639 + (TG)n Simple_repeat Simple_repeat 2 36 0 413 367 28 11 chr12 44569277 44569454 -99217001 - MIR SINE MIR -20 242 63 2104 254 38 2 chr12 44569501 44570132 -99216323 - L1M4 LINE L1 -1950 4196 3543 1018 187 25 0 chr12 44570180 44570383 -99216072 - L1PA16 LINE L1 -9 6157 5950 338 211 24 78 chr12 44570385 44570551 -99215904 - L1M4 LINE L1 -3118 3028 2872 215 79 26 0 chr12 44570616 44570654 -99215801 + (TA)n Simple_repeat Simple_repeat 2 40 0 309 303 138 50 chr12 44570990 44571208 -99215247 - L3 LINE CR1 -250 1327 1091 539 281 86 36 chr12 44571458 44571679 -99214776 + MIR SINE MIR 18 249 -13 24 0 0 0 chr12 44572557 44572581 -99213874 + AT_rich Low_complexity Low_complexity 1 24 0 302 271 28 56 chr12 44575051 44575158 -99211297 + MIR SINE MIR 30 133 -75 621 277 245 33 chr12 44575244 44575738 -99210717 - L2 LINE L2 -49 3264 2660 420 71 0 0 chr12 44576840 44576896 -99209559 + (TA)n Simple_repeat Simple_repeat 2 57 0 2335 72 3 0 chr12 44577726 44578032 -99208423 - L1PA7 LINE L1 0 6154 5848 276 260 0 14 chr12 44578565 44578667 -99207788 + (CATA)n Simple_repeat Simple_repeat 1 100 0 240 239 102 0 chr12 44579932 44580020 -99206435 - MIR SINE MIR -2 260 164 529 237 101 0 chr12 44580243 44580382 -99206073 + MER46C DNA MER2_type 79 231 -107 706 247 0 0 chr12 44580388 44580534 -99205921 - MIR SINE MIR -104 158 13 219 324 53 53 chr12 44580583 44580753 -99205702 - L2 LINE L2 -194 3078 2909 312 309 57 79 chr12 44580982 44581247 -99205208 - L2 LINE L2 -631 2683 2425 206 300 14 29 chr12 44581495 44581565 -99204890 - L2 LINE L2 0 3313 3245 214 337 47 0 chr12 44581796 44581882 -99204573 + L2 LINE L2 2393 2482 -832 205 180 20 60 chr12 44582124 44582174 -99204281 + MIR SINE MIR 197 244 -18 396 158 0 0 chr12 44582206 44582282 -99204173 + CT-rich Low_complexity Low_complexity 2 77 0 685 291 10 34 chr12 44582872 44583078 -99203377 + MIR SINE MIR 61 261 -1 2721 13 0 16 chr12 44584155 44584469 -99201986 - AluYa5 SINE Alu -2 309 1 200 61 61 0 chr12 44584771 44584804 -99201651 + GA-rich Low_complexity Low_complexity 1 35 0 508 288 198 5 chr12 44586303 44586515 -99199940 + MIR SINE MIR 10 262 0 227 310 32 70 chr12 44588683 44588841 -99197614 - L2 LINE L2 -197 3075 2924 384 303 19 39 chr12 44590077 44590232 -99196223 + MIR SINE MIR 48 199 -63 198 381 102 19 chr12 44591068 44591546 -99194909 + L2 LINE L2 541 1058 -2256 192 40 0 0 chr12 44591609 44591634 -99194821 + (T)n Simple_repeat Simple_repeat 1 25 0 1803 196 3 3 chr12 44592315 44592626 -99193829 + MER44D DNA MER2_type 1 311 -394 564 175 10 0 chr12 44592628 44592725 -99193730 + AluJ/FLAM SINE Alu 3 100 -212 195 69 0 0 chr12 44592734 44592763 -99193692 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 971 196 133 0 chr12 44592810 44592948 -99193507 + MER44D DNA MER2_type 294 412 -2075 264 59 0 0 chr12 44592948 44592982 -99193473 + (TA)n Simple_repeat Simple_repeat 2 35 0 971 196 133 0 chr12 44592982 44593068 -99193387 + MER44D DNA MER2_type 412 603 -2 27 49 0 0 chr12 44595244 44595285 -99191170 + AT_rich Low_complexity Low_complexity 1 41 0 198 250 0 118 chr12 44595854 44595930 -99190525 - MER5A DNA MER1_type 0 189 123 191 310 0 17 chr12 44595900 44595958 -99190497 + MER5A DNA MER1_type 49 105 -84 * 276 315 33 22 chr12 44596444 44596536 -99189919 + MIR SINE MIR 25 117 -145 324 358 101 14 chr12 44597012 44597230 -99189225 + L2 LINE L2 2644 2880 -434 * 333 361 57 0 chr12 44597228 44597350 -99189105 + L2 LINE L2 3144 3272 0 243 319 138 25 chr12 44597423 44597583 -99188872 - MIR3 SINE MIR -16 192 15 286 213 25 16 chr12 44597583 44597705 -99188750 + CT-rich Low_complexity Low_complexity 3 125 0 674 329 46 29 chr12 44599943 44600183 -99186272 + MIR SINE MIR 7 250 -12 23 68 0 0 chr12 44600465 44600509 -99185946 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr12 44600811 44600837 -99185618 + AT_rich Low_complexity Low_complexity 1 26 0 27 92 0 0 chr12 44600952 44601028 -99185427 + AT_rich Low_complexity Low_complexity 1 76 0 236 119 24 0 chr12 44601082 44601124 -99185331 - L1MC/D LINE L1 -1922 5886 5844 1160 271 102 63 chr12 44601545 44601569 -99184886 - L1MEd LINE L1 -910 1580 1558 2099 73 42 0 chr12 44601569 44601689 -99184766 + AluY SINE Alu 1 115 -196 464 0 0 18 chr12 44601689 44601746 -99184709 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2099 73 42 0 chr12 44601746 44601913 -99184542 + AluY SINE Alu 115 300 -11 1160 271 102 63 chr12 44601913 44602963 -99183492 - L1MEd LINE L1 -932 1558 551 243 0 0 0 chr12 44602963 44602990 -99183465 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 270 0 0 0 chr12 44602989 44603019 -99183436 + (TG)n Simple_repeat Simple_repeat 2 31 0 1160 271 102 63 chr12 44602990 44603082 -99183373 - L1MEd LINE L1 -1939 551 319 180 0 0 0 chr12 44603690 44603710 -99182745 + (T)n Simple_repeat Simple_repeat 1 20 0 322 287 110 37 chr12 44603800 44603964 -99182491 + L3 LINE CR1 660 835 -742 253 372 44 18 chr12 44604108 44604221 -99182234 + L2 LINE L2 3141 3256 -16 * 884 315 107 42 chr12 44604212 44604800 -99181655 + L3 LINE CR1 798 1423 -154 561 277 14 79 chr12 44604976 44605144 -99181311 + MIR SINE MIR 2 147 -115 603 153 59 17 chr12 44605144 44605262 -99181193 + FLAM_C SINE Alu 1 123 -10 561 277 14 79 chr12 44605262 44605371 -99181084 + MIR SINE MIR 147 261 -1 382 283 80 27 chr12 44605385 44605560 -99180895 - MIR SINE MIR -64 144 3 2324 63 0 48 chr12 44606133 44606448 -99180007 + AluY SINE Alu 1 300 -11 3252 59 2 20 chr12 44607576 44608017 -99178438 - L1PA7 LINE L1 -5 6149 5717 615 125 0 0 chr12 44608017 44608113 -99178342 + L1P LINE L1 4668 4763 -1383 * 1868 36 0 0 chr12 44608105 44608327 -99178128 + L1P3 LINE L1 5485 5706 -448 682 204 15 15 chr12 44609013 44609150 -99177305 + MER69 DNA AcHobo 2 138 -2388 738 276 55 17 chr12 44609581 44609820 -99176635 - MIR SINE MIR -15 247 2 6425 137 16 9 chr12 44609964 44611204 -99175251 - L1MA5 LINE L1 -6 6294 5041 27 81 0 0 chr12 44611645 44611707 -99174748 + AT_rich Low_complexity Low_complexity 1 62 0 1845 95 52 4 chr12 44612210 44612489 -99173966 + AluSc SINE Alu 16 306 0 791 276 38 17 chr12 44612690 44612929 -99173526 + MIR SINE MIR 8 251 -11 1043 151 13 54 chr12 44612962 44613201 -99173254 + L1MB4 LINE L1 5951 6179 -1 2315 50 0 63 chr12 44613687 44614004 -99172451 - AluY SINE Alu -14 297 1 253 296 44 82 chr12 44614177 44614312 -99172143 + L3b LINE CR1 1446 1575 -8 216 0 0 0 chr12 44614565 44614589 -99171866 + (TA)n Simple_repeat Simple_repeat 2 25 0 2309 85 0 0 chr12 44614589 44614883 -99171572 - AluY SINE Alu -17 294 1 207 314 167 10 chr12 44614978 44615080 -99171375 - L2 LINE L2 -6 3307 3190 27 81 0 0 chr12 44615415 44615477 -99170978 + AT_rich Low_complexity Low_complexity 1 62 0 204 158 0 0 chr12 44615551 44615589 -99170866 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 148 0 0 chr12 44615649 44615703 -99170752 + (TA)n Simple_repeat Simple_repeat 2 55 0 730 201 50 0 chr12 44615989 44616128 -99170327 - MER20 DNA MER1_type -34 185 40 625 283 84 65 chr12 44616217 44616359 -99170096 - L1MC4a LINE L1 -1911 5897 5759 1468 103 0 0 chr12 44616359 44616554 -99169901 - AluSq SINE Alu -118 195 1 625 283 84 65 chr12 44616554 44616782 -99169673 - L1MC4a LINE L1 -2049 5759 5520 22 0 0 0 chr12 44616811 44616833 -99169622 + AT_rich Low_complexity Low_complexity 1 22 0 1795 148 0 3 chr12 44617800 44618108 -99168347 + AluJb SINE Alu 1 307 0 289 295 164 63 chr12 44618346 44618614 -99167841 - L2 LINE L2 0 3313 3019 470 253 146 26 chr12 44618636 44618740 -99167715 + L2 LINE L2 594 684 -2630 2174 162 28 10 chr12 44618740 44619129 -99167326 - MSTD LTR MaLR 0 396 1 470 253 146 26 chr12 44619129 44619257 -99167198 + L2 LINE L2 684 854 -2460 2040 117 17 3 chr12 44620858 44621158 -99165297 - AluSx SINE Alu -8 304 1 301 363 16 47 chr12 44621667 44621857 -99164598 - MIR SINE MIR -61 201 18 184 194 0 0 chr12 44622023 44622059 -99164396 - L2 LINE L2 -1062 2252 2217 196 409 98 28 chr12 44623479 44623694 -99162761 - L2 LINE L2 -3 3269 3040 2468 61 3 16 chr12 44623815 44624127 -99162328 + AluY SINE Alu 1 308 -3 7764 16 5 0 chr12 44624127 44625044 -99161411 + L1PA3 LINE L1 5235 6155 0 186 208 0 0 chr12 44625104 44625152 -99161303 + (ATG)n Simple_repeat Simple_repeat 2 49 0 257 250 77 29 chr12 44625164 44625268 -99161187 - L2 LINE L2 -30 3242 3134 763 311 73 11 chr12 44625427 44625891 -99160564 - L2 LINE L2 -239 3033 2533 196 322 0 0 chr12 44625866 44625925 -99160530 - MIR SINE MIR -10 252 194 * 27 0 0 0 chr12 44626077 44626104 -99160351 + AT_rich Low_complexity Low_complexity 1 27 0 589 250 17 50 chr12 44626400 44626580 -99159875 - L2 LINE L2 0 3313 3140 418 332 53 24 chr12 44626666 44626874 -99159581 - L2 LINE L2 -181 3132 2919 332 248 60 27 chr12 44627048 44627197 -99159258 - HAL1b LINE L1 -335 1013 860 23 54 0 0 chr12 44627216 44627253 -99159202 + AT_rich Low_complexity Low_complexity 1 37 0 435 151 41 0 chr12 44627327 44627400 -99159055 + FLAM_A SINE Alu 1 76 -66 722 140 7 29 chr12 44627403 44627539 -99158916 + AluSg/x SINE Alu 175 307 -2 441 273 96 29 chr12 44627690 44627899 -99158556 - HAL1b LINE L1 -1036 312 90 1526 198 7 30 chr12 44629146 44629449 -99157006 + AluJo SINE Alu 3 298 -14 180 111 0 0 chr12 44629535 44629562 -99156893 + (GA)n Simple_repeat Simple_repeat 1 27 0 387 313 25 31 chr12 44629971 44630131 -99156324 - L2 LINE L2 0 3313 3155 23 0 0 0 chr12 44630866 44630889 -99155566 + AT_rich Low_complexity Low_complexity 1 23 0 4456 115 0 0 chr12 44632079 44632716 -99153739 + L1PA13 LINE L1 5525 6161 -2 271 163 33 22 chr12 44632791 44632883 -99153572 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 108 14 0 chr12 44634483 44634771 -99151684 + AluSg SINE Alu 1 292 -18 312 321 53 15 chr12 44634825 44634956 -99151499 - MIR SINE MIR -94 168 33 333 47 0 0 chr12 44635025 44635068 -99151387 + (TG)n Simple_repeat Simple_repeat 2 44 0 324 316 88 84 chr12 44635350 44635780 -99150675 + L2 LINE L2 2445 2876 -438 262 319 5 43 chr12 44635879 44635988 -99150467 - MIR SINE MIR -89 119 12 208 340 0 21 chr12 44635995 44636089 -99150366 + L2 LINE L2 2918 3009 -263 516 176 94 41 chr12 44636157 44636327 -99150128 + MER104 DNA MER2_type 1 179 -1 556 302 50 22 chr12 44636460 44636639 -99149816 - MER5A DNA MER1_type -5 184 1 205 337 168 0 chr12 44636978 44637073 -99149382 + L2 LINE L2 3122 3232 -40 24073 90 6 2 chr12 44638270 44642541 -99143914 - L1PA7 LINE L1 -4 6465 2177 4750 102 6 23 chr12 44642538 44643232 -99143223 - L1PA7 LINE L1 -5776 685 4 * 301 332 201 23 chr12 44643349 44644012 -99142443 + L2 LINE L2 1596 2376 -938 284 261 87 11 chr12 44645306 44645398 -99141057 + L2 LINE L2 3211 3309 -4 546 212 33 46 chr12 44646951 44646975 -99139480 - L1MA10 LINE L1 -4 6330 6307 825 265 4 34 chr12 44646975 44647243 -99139212 - L1ME1 LINE L1 -18 6148 5889 207 100 0 0 chr12 44647695 44647725 -99138730 + (TG)n Simple_repeat Simple_repeat 1 30 0 718 143 16 0 chr12 44647861 44647987 -99138468 - L1MA4 LINE L1 -3 6297 6170 2579 20 0 0 chr12 44648310 44648608 -99137847 - L1HS LINE L1 0 6155 5858 2534 196 43 43 chr12 44650388 44650999 -99135456 - L1MA10 LINE L1 -2 6332 5722 423 0 0 0 chr12 44650999 44651046 -99135409 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 762 153 0 0 chr12 44651047 44651158 -99135297 - AluSg/x SINE Alu -28 284 174 320 167 19 0 chr12 44651162 44651216 -99135239 + AluJb SINE Alu 117 171 -131 502 122 12 0 chr12 44651216 44651298 -99135157 - L1MA10 LINE L1 -609 5725 5643 3513 171 42 8 chr12 44651343 44652049 -99134406 - L1MA10 LINE L1 -1150 4996 4267 341 225 14 0 chr12 44652324 44652395 -99134060 - MLT1J2 LTR MaLR -378 72 1 1395 140 0 9 chr12 44653023 44653245 -99133210 - AluSg/x SINE Alu -5 307 88 245 209 104 0 chr12 44653460 44653527 -99132928 - L2 LINE L2 -9 3304 3231 514 291 34 0 chr12 44654131 44654306 -99132149 - L1ME1 LINE L1 -209 5912 5732 208 292 62 15 chr12 44656138 44656203 -99130252 + L2 LINE L2 3246 3313 0 281 212 30 0 chr12 44656221 44656287 -99130168 - MER105 DNA DNA 0 204 137 24 0 0 0 chr12 44656470 44656494 -99129961 + AT_rich Low_complexity Low_complexity 1 24 0 202 115 33 66 chr12 44656822 44656883 -99129572 + (CATAT)n Simple_repeat Simple_repeat 5 63 0 707 240 62 0 chr12 44657042 44657234 -99129221 - MER105 DNA DNA 0 204 1 229 235 148 40 chr12 44657259 44657408 -99129047 - HAL1 LINE L1 -178 2329 2165 459 283 17 73 chr12 44657857 44658034 -99128421 - MLT2E LTR ERVL -451 177 11 880 281 121 18 chr12 44658074 44658506 -99127949 - L2 LINE L2 -544 2770 2238 629 181 133 64 chr12 44658513 44658701 -99127754 - MLT1C LTR MaLR 0 467 267 466 237 9 9 chr12 44658758 44658872 -99127583 + MLT2E LTR ERVL 515 628 0 508 204 79 73 chr12 44658917 44659129 -99127326 - MLT1C LTR MaLR -243 224 1 683 263 43 30 chr12 44659171 44659403 -99127052 - L2 LINE L2 -1104 2210 1976 615 320 35 18 chr12 44659603 44659831 -99126624 + MIR SINE MIR 2 233 -29 594 304 32 68 chr12 44659858 44660312 -99126143 - HAL1 LINE L1 -1135 1372 944 2377 85 0 19 chr12 44660312 44660629 -99125826 - AluY SINE Alu 0 311 1 594 304 32 68 chr12 44660629 44660793 -99125662 - HAL1 LINE L1 -1563 944 776 216 341 83 15 chr12 44661735 44661867 -99124588 - L2 LINE L2 -4 3309 3169 313 210 208 7 chr12 44661895 44662031 -99124424 + L1ME1 LINE L1 6015 6334 0 439 272 156 42 chr12 44662034 44662228 -99124227 + L1M4 LINE L1 4399 4570 -1576 282 73 0 0 chr12 44662228 44662269 -99124186 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 439 272 156 42 chr12 44662269 44662434 -99124021 + L1M4 LINE L1 4570 4799 -1347 220 359 12 53 chr12 44662515 44662685 -99123770 - L2 LINE L2 -194 3078 2916 209 217 0 0 chr12 44664530 44664576 -99121879 + T-rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr12 44664579 44664602 -99121853 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr12 44666046 44666071 -99120384 + AT_rich Low_complexity Low_complexity 1 25 0 351 279 48 39 chr12 44666100 44666204 -99120251 + L2 LINE L2 3168 3272 0 230 250 0 18 chr12 44666214 44666270 -99120185 + Tigger5 DNA MER2_type 1 55 -2268 * 433 219 48 0 chr12 44666257 44666362 -99120093 + Tigger5 DNA MER2_type 2210 2319 -4 908 236 89 43 chr12 44668293 44668619 -99117836 - MLT1I LTR MaLR -68 341 1 246 370 12 0 chr12 44670479 44670560 -99115895 + L2 LINE L2 1149 1230 -2084 188 171 98 0 chr12 44670562 44670603 -99115852 + L2 LINE L2 1201 1245 -2069 1534 194 111 90 chr12 44670604 44671135 -99115320 - MLT1F1 LTR MaLR 0 567 1 3071 273 112 52 chr12 44671136 44673028 -99113427 + L2 LINE L2 1243 3308 -5 2608 35 0 16 chr12 44673466 44673780 -99112675 - AluY SINE Alu -1 310 2 23 33 0 0 chr12 44673812 44673842 -99112613 + AT_rich Low_complexity Low_complexity 1 30 0 287 340 62 45 chr12 44674698 44674986 -99111469 + L2 LINE L2 2235 2527 -787 737 289 40 18 chr12 44675051 44675276 -99111179 + MIR SINE MIR 2 231 -31 392 353 79 41 chr12 44675310 44675678 -99110777 + L2 LINE L2 2595 2976 -338 431 243 68 51 chr12 44675736 44675913 -99110542 - L2 LINE L2 -1258 2056 1877 22 0 0 0 chr12 44676655 44676677 -99109778 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 44676728 44676749 -99109706 + AT_rich Low_complexity Low_complexity 1 21 0 1134 234 77 22 chr12 44678330 44678731 -99107724 - L1ME1 LINE L1 -4 6162 5740 201 74 0 0 chr12 44679339 44679366 -99107089 + (TG)n Simple_repeat Simple_repeat 2 28 0 2351 15 0 0 chr12 44680047 44680308 -99106147 - AluYa5 SINE Alu -14 297 37 2507 63 0 3 chr12 44683048 44683347 -99103108 + AluY SINE Alu 1 298 -13 234 281 62 16 chr12 44683756 44683820 -99102635 - L2 LINE L2 -39 3233 3167 876 172 0 0 chr12 44683856 44684013 -99102442 - MER3 DNA MER1_type -4 205 49 679 158 53 0 chr12 44684014 44684147 -99102308 - MSTA LTR MaLR 0 428 289 438 20 0 0 chr12 44684171 44684222 -99102233 + (GA)n Simple_repeat Simple_repeat 1 51 0 42 20 0 0 chr12 44684530 44684579 -99101876 + AT_rich Low_complexity Low_complexity 1 49 0 651 239 94 0 chr12 44684777 44684915 -99101540 + FRAM SINE Alu 1 151 -15 22 0 0 0 chr12 44685050 44685072 -99101383 + AT_rich Low_complexity Low_complexity 1 22 0 228 271 72 30 chr12 44685232 44685398 -99101057 + L1ME LINE L1 5628 5800 -321 22 35 0 0 chr12 44685487 44685516 -99100939 + AT_rich Low_complexity Low_complexity 1 29 0 393 21 0 0 chr12 44685516 44685564 -99100891 + L1PA6 LINE L1 6102 6149 -5 470 287 55 10 chr12 44685950 44686188 -99100267 - L1ME2 LINE L1 -2 6160 5888 * 868 274 48 19 chr12 44686180 44686879 -99099576 - L1ME LINE L1 -3709 2371 1665 1579 120 37 91 chr12 44686888 44687238 -99099217 - MER44D DNA MER2_type -8 601 1 1763 270 50 27 chr12 44687238 44688299 -99098156 - L1ME LINE L1 -4595 1666 536 5274 148 36 11 chr12 44688481 44689801 -99096654 - L1MA5 LINE L1 0 6300 4954 608 308 102 9 chr12 44689954 44690298 -99096157 - L1ME LINE L1 -5653 417 42 771 294 18 13 chr12 44691164 44691392 -99095063 + MIR SINE MIR 22 250 -12 298 346 99 40 chr12 44691626 44691810 -99094645 + L2 LINE L2 2921 3093 -220 1582 197 24 53 chr12 44691810 44692186 -99094269 - MLT1A1 LTR MaLR 0 365 1 298 346 99 40 chr12 44692186 44692354 -99094101 + L2 LINE L2 3093 3294 -19 981 272 80 38 chr12 44693479 44693979 -99092476 + LTR33 LTR ERVL 1 521 0 24 91 0 0 chr12 44694039 44694105 -99092350 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr12 44694249 44694272 -99092183 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr12 44694702 44694730 -99091725 + (TG)n Simple_repeat Simple_repeat 2 29 0 249 33 0 0 chr12 44695285 44695315 -99091140 + (A)n Simple_repeat Simple_repeat 1 30 0 737 254 151 57 chr12 44696599 44697216 -99089239 - L2 LINE L2 -102 3211 2567 360 282 48 68 chr12 44697301 44697549 -99088906 + L1ME3A LINE L1 4605 4847 -1299 24 32 0 0 chr12 44697675 44697706 -99088749 + AT_rich Low_complexity Low_complexity 1 31 0 282 56 0 0 chr12 44697751 44697787 -99088668 + (TA)n Simple_repeat Simple_repeat 2 37 0 349 263 67 17 chr12 44697795 44698040 -99088415 + L1ME3A LINE L1 5290 5538 -618 843 186 62 5 chr12 44698137 44698330 -99088125 - MER3 DNA MER1_type 0 209 6 511 209 104 11 chr12 44698355 44698537 -99087918 + L1ME3A LINE L1 5683 5881 -289 2541 173 209 70 chr12 44698537 44699650 -99086805 + LTR12 LTR ERV1 1 692 -22 1425 231 33 56 chr12 44699648 44700215 -99086240 - pTR5 LTR ERV1 -2046 392 67 * 327 228 11 0 chr12 44700215 44700307 -99086148 - LTR30 LTR ERV1 -79 643 551 5563 160 60 57 chr12 44700307 44701593 -99084862 - pTR5 LTR ERV1 -406 2032 743 988 68 95 0 chr12 44701593 44701740 -99084715 + LTR12 LTR ERV1 554 714 0 29 60 0 0 chr12 44701774 44701824 -99084631 + AT_rich Low_complexity Low_complexity 1 50 0 200 216 29 39 chr12 44702060 44702162 -99084293 + (TA)n Simple_repeat Simple_repeat 2 102 0 266 281 91 45 chr12 44702703 44702945 -99083510 - L1ME LINE L1 -557 5564 5312 206 289 74 95 chr12 44703144 44703334 -99083121 - L3 LINE CR1 -114 1463 1278 228 385 18 0 chr12 44703380 44703489 -99082966 - L3 LINE CR1 -424 1153 1043 827 242 54 0 chr12 44704554 44704740 -99081715 - MER58A DNA MER1_type -27 197 2 504 248 66 0 chr12 44705295 44705432 -99081023 + MIR SINE MIR 117 262 0 273 264 0 11 chr12 44705636 44705723 -99080732 - MER117 DNA MER1_type -31 166 81 423 149 35 11 chr12 44706088 44706175 -99080280 + MSTA LTR MaLR 1 89 -339 3663 152 14 66 chr12 44706182 44706999 -99079456 + LTR1 LTR ERV1 12 785 0 2237 129 9 0 chr12 44706999 44707339 -99079116 + MSTA LTR MaLR 86 428 0 357 200 0 0 chr12 44708415 44708490 -99077965 + MLT1J2 LTR MaLR 352 426 -24 607 250 50 6 chr12 44709681 44709841 -99076614 + MLT1J2 LTR MaLR 1 167 -283 1521 225 54 58 chr12 44709902 44710422 -99076033 + Cheshire DNA MER1_type 30 547 -1873 1410 224 133 33 chr12 44710422 44710881 -99075574 + MLT1D LTR MaLR 1 505 0 * 6242 196 67 72 chr12 44710881 44712202 -99074253 + Cheshire DNA MER1_type 565 1877 -543 2326 82 0 7 chr12 44712202 44712531 -99073924 - AluY SINE Alu 0 311 1 6242 196 67 72 chr12 44712531 44713073 -99073382 + Cheshire DNA MER1_type 1877 2420 0 414 276 63 35 chr12 44713091 44713265 -99073190 + MLT1J2 LTR MaLR 272 450 0 29 28 0 0 chr12 44713945 44713981 -99072474 + AT_rich Low_complexity Low_complexity 1 36 0 243 286 75 68 chr12 44714032 44714165 -99072290 - MER5A DNA MER1_type 0 189 56 205 278 10 113 chr12 44715014 44715111 -99071344 + L2 LINE L2 3187 3273 -40 316 242 116 11 chr12 44716483 44716578 -99069877 - L2 LINE L2 0 3272 3168 2700 107 8 5 chr12 44716786 44717160 -99069295 + THE1C LTR MaLR 1 375 0 9436 120 50 40 chr12 44717160 44718725 -99067730 + THE1C-int LTR MaLR 1 1580 0 2480 132 11 3 chr12 44718725 44719097 -99067358 + THE1C LTR MaLR 1 375 0 3419 206 57 16 chr12 44719191 44719940 -99066515 + L1M1 LINE L1 8 787 -6778 13364 114 1 6 chr12 44719961 44721912 -99064543 - HUERS-P3 LTR ERV1 -2748 6171 4230 10786 156 5 14 chr12 44721918 44724442 -99062013 - HUERS-P3 LTR ERV1 -4944 3975 1107 218 344 0 0 chr12 44724694 44724758 -99061697 + C-rich Low_complexity Low_complexity 3 66 0 266 293 50 14 chr12 44725398 44725538 -99060917 - L1ME LINE L1 -338 5832 5688 843 291 51 23 chr12 44725539 44726248 -99060207 - L1ME LINE L1 -2298 3848 3120 6090 137 23 43 chr12 44726379 44727468 -99058987 - HUERS-P3 LTR ERV1 -7838 1081 15 4227 123 10 5 chr12 44727483 44728092 -99058363 - LTR9 LTR ERV1 0 612 1 2823 221 3 14 chr12 44728101 44728668 -99057787 + L1M1 LINE L1 1273 1833 -5732 * 5050 107 34 50 chr12 44728660 44729174 -99057281 + L1M1 LINE L1 2247 2737 -4828 1699 111 8 8 chr12 44729174 44729409 -99057046 + AluSq SINE Alu 1 235 -78 5050 107 34 50 chr12 44729409 44729908 -99056547 + L1M1 LINE L1 2737 3243 -4322 1143 130 0 0 chr12 44729907 44730099 -99056356 + L1PA13 LINE L1 1934 2125 -4662 * 4584 186 11 8 chr12 44730103 44731065 -99055390 + L1PA13 LINE L1 2326 3290 -3507 3861 71 0 4 chr12 44731066 44731153 -99055302 + L1PA13 LINE L1 5421 5507 -656 3861 123 2 2 chr12 44731153 44731732 -99054723 + L1PA13 LINE L1 5566 6144 -19 3861 71 0 4 chr12 44731732 44731747 -99054708 + L1PA13 LINE L1 5507 6144 -19 2333 124 10 7 chr12 44731745 44732149 -99054306 + L1M1 LINE L1 3221 3625 -3940 * 1054 219 54 27 chr12 44732155 44732489 -99053966 + L1M1 LINE L1 3732 4074 -3491 341 91 0 18 chr12 44732873 44732928 -99053527 + (TA)n Simple_repeat Simple_repeat 2 55 0 318 200 0 100 chr12 44732990 44733090 -99053365 + L1MC4 LINE L1 6614 6703 -1339 2219 89 13 10 chr12 44733109 44733422 -99053033 - L1PA8 LINE L1 -12 6160 5847 29 47 0 0 chr12 44733656 44733699 -99052756 + AT_rich Low_complexity Low_complexity 1 43 0 247 301 87 39 chr12 44733902 44734005 -99052450 - MIR3 SINE MIR -52 156 49 1782 148 44 35 chr12 44734277 44734447 -99052008 + MER7A DNA MER2_type 1 168 -2870 2195 169 44 7 chr12 44734447 44734860 -99051595 - MSTA LTR MaLR 0 428 1 8565 176 36 14 chr12 44734860 44736475 -99049980 - MSTA-int LTR MaLR 0 1651 1 2614 136 29 7 chr12 44736475 44736894 -99049561 - MSTA LTR MaLR 0 428 1 1782 148 44 35 chr12 44736894 44737065 -99049390 + MER7A DNA MER2_type 167 345 -1 26 50 0 0 chr12 44737262 44737302 -99049153 + AT_rich Low_complexity Low_complexity 1 40 0 212 267 43 43 chr12 44737322 44737438 -99049017 + L2 LINE L2 2454 2569 -745 1388 198 86 46 chr12 44737446 44737841 -99048614 + LTR52 LTR ERVL 8 418 -3 1020 290 45 55 chr12 44737841 44738518 -99047937 + L2 LINE L2 2570 3240 -73 457 329 92 4 chr12 44740093 44740342 -99046113 - L1MEc LINE L1 -3679 2536 2266 377 263 91 0 chr12 44740521 44740719 -99045736 - L1MEc LINE L1 -4921 1475 1260 27 0 0 0 chr12 44741052 44741079 -99045376 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 44741667 44741688 -99044767 + AT_rich Low_complexity Low_complexity 1 21 0 1058 83 28 5 chr12 44741876 44742094 -99044361 + (TTTC)n Simple_repeat Simple_repeat 1 222 0 340 267 281 7 chr12 44742421 44742567 -99043888 - MIR SINE MIR -14 248 63 484 319 17 0 chr12 44743369 44743485 -99042970 - L2 LINE L2 0 3272 3155 196 213 85 0 chr12 44744117 44744164 -99042291 - MIR SINE MIR 0 262 212 322 282 87 0 chr12 44744344 44744447 -99042008 + MIR3 SINE MIR 82 193 -15 463 267 75 113 chr12 44745803 44746298 -99040157 + L2 LINE L2 2838 3313 0 1915 165 117 7 chr12 44746574 44746993 -99039462 - MLT1C LTR MaLR -2 465 1 1511 153 68 6 chr12 44747172 44747493 -99038962 - MER34B LTR ERV1 -5 560 220 2770 82 92 5 chr12 44747495 44747907 -99038548 - LTR7 LTR ERV1 -2 448 1 2249 96 48 13 chr12 44747907 44748284 -99038171 - HERVH LTR ERV1 0 7713 7324 1215 120 17 73 chr12 44748284 44748517 -99037938 - HERVH LTR ERV1 -1894 5819 5600 7371 124 13 7 chr12 44748518 44750230 -99036225 - HERVH LTR ERV1 -2564 5149 3492 936 120 7 0 chr12 44750220 44750370 -99036085 - HERVH LTR ERV1 -4423 3290 3140 * 13974 95 13 20 chr12 44750364 44752575 -99033880 - HERVH LTR ERV1 -4726 2987 793 2913 98 2 21 chr12 44752629 44753097 -99033358 - HERVH LTR ERV1 -7254 459 1 2612 92 102 15 chr12 44753099 44753511 -99032944 - LTR7 LTR ERV1 -2 448 1 1398 148 5 0 chr12 44753511 44753734 -99032721 - MER34B LTR ERV1 -341 224 1 190 328 82 0 chr12 44753749 44753810 -99032645 - L2 LINE L2 -61 3211 3146 213 132 0 0 chr12 44754468 44754506 -99031949 + (GA)n Simple_repeat Simple_repeat 1 38 0 26 64 0 0 chr12 44755258 44755305 -99031150 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr12 44755813 44755841 -99030614 + AT_rich Low_complexity Low_complexity 1 28 0 421 331 37 57 chr12 44755852 44756097 -99030358 - L1MEd LINE L1 -5311 808 569 1583 174 24 30 chr12 44756097 44756395 -99030060 - AluJb SINE Alu -16 296 1 262 252 52 43 chr12 44756733 44756848 -99029607 - L1MEd LINE L1 -5953 166 51 215 299 10 72 chr12 44757318 44757415 -99029040 - L2 LINE L2 -14 3258 3168 1036 116 0 0 chr12 44758109 44758256 -99028199 - AluSc SINE Alu -3 306 160 327 255 55 62 chr12 44759312 44759457 -99026998 - MIR SINE MIR -57 205 62 276 250 48 8 chr12 44760266 44760390 -99026065 + (TA)n Simple_repeat Simple_repeat 2 130 0 21 0 0 0 chr12 44760426 44760447 -99026008 + AT_rich Low_complexity Low_complexity 1 21 0 199 292 0 0 chr12 44761692 44761740 -99024715 + MIR SINE MIR 99 146 -116 27 0 0 0 chr12 44761840 44761867 -99024588 + AT_rich Low_complexity Low_complexity 1 27 0 320 287 28 28 chr12 44763477 44763585 -99022870 - L2 LINE L2 -2 3311 3204 1486 230 25 6 chr12 44763681 44764037 -99022418 - MLT1A2 LTR MaLR -11 363 1 350 295 110 17 chr12 44764042 44764215 -99022240 - L2 LINE L2 -194 3119 2931 294 311 175 6 chr12 44764265 44764442 -99022013 - L2 LINE L2 -711 2603 2397 591 293 32 59 chr12 44764764 44765017 -99021438 - MIR SINE MIR -3 259 14 215 239 0 56 chr12 44765445 44765516 -99020939 - L2 LINE L2 0 3313 3247 180 0 0 0 chr12 44765634 44765654 -99020801 + (T)n Simple_repeat Simple_repeat 1 20 0 1632 176 108 35 chr12 44766453 44766879 -99019576 - MSTB2 LTR MaLR 0 457 1 901 166 6 0 chr12 44767461 44767636 -99018819 - L1MA3 LINE L1 0 6305 6130 4491 114 6 5 chr12 44767664 44768333 -99018122 - L1PA16 LINE L1 0 6166 5497 459 125 0 38 chr12 44768333 44768413 -99018042 - L1PA15-16 LINE L1 -5237 1612 1536 1625 149 98 3 chr12 44768420 44768716 -99017739 - MSTB LTR MaLR -102 324 1 1649 149 12 19 chr12 44769625 44769946 -99016509 + L1PA16 LINE L1 5825 6142 -24 373 297 135 43 chr12 44770043 44770228 -99016227 + MIR SINE MIR 5 206 -56 719 329 58 51 chr12 44770908 44771497 -99014958 + HAL1 LINE L1 1072 1664 -843 1797 234 34 28 chr12 44771810 44772311 -99014144 + MLT1D LTR MaLR 1 504 -1 233 102 68 0 chr12 44772313 44772372 -99014083 + (TA)n Simple_repeat Simple_repeat 2 64 0 366 87 130 0 chr12 44772373 44772442 -99014013 - L1PA12 LINE L1 -13 6155 6078 210 136 68 17 chr12 44772459 44772477 -99013978 + (TA)n Simple_repeat Simple_repeat 2 18 -45 559 45 0 0 chr12 44772477 44772544 -99013911 - L1PA7 LINE L1 -17 6137 6071 210 136 68 17 chr12 44772544 44772584 -99013871 + (TA)n Simple_repeat Simple_repeat 18 63 0 198 0 0 0 chr12 44772584 44772606 -99013849 + (CA)n Simple_repeat Simple_repeat 2 23 0 3379 294 108 16 chr12 44772637 44774121 -99012334 + L2 LINE L2 664 2285 -1029 547 335 48 13 chr12 44774124 44774351 -99012104 + L2 LINE L2 2428 2662 -652 426 212 220 23 chr12 44774427 44774559 -99011896 + MER5A DNA MER1_type 30 187 -2 818 292 148 10 chr12 44774638 44775022 -99011433 + L2 LINE L2 2869 3305 -8 1877 195 139 79 chr12 44775312 44776234 -99010221 - L1ME2 LINE L1 -14 6150 5160 452 293 6 33 chr12 44776897 44777078 -99009377 - L2 LINE L2 -4 3309 3134 363 312 41 24 chr12 44777390 44777560 -99008895 - MIR SINE MIR -10 252 80 1265 239 128 38 chr12 44779511 44779988 -99006467 - MLT2B1 LTR ERVL 0 520 1 295 349 108 28 chr12 44780115 44780439 -99006016 - L2 LINE L2 -2 3311 2962 * 993 279 71 52 chr12 44780436 44780898 -99005557 - L2 LINE L2 -1 3312 2842 192 265 20 0 chr12 44780950 44780999 -99005456 - MIR SINE MIR -65 197 148 1037 235 47 24 chr12 44781085 44781340 -99005115 + MIR SINE MIR 1 261 -1 37 52 0 0 chr12 44782371 44782429 -99004026 + AT_rich Low_complexity Low_complexity 1 58 0 251 341 82 7 chr12 44782670 44782805 -99003650 - L2 LINE L2 -960 2354 2210 734 159 8 8 chr12 44782939 44783057 -99003398 - MIR SINE MIR -57 205 85 246 62 0 0 chr12 44783057 44783089 -99003366 + (CA)n Simple_repeat Simple_repeat 1 32 0 2457 46 0 0 chr12 44783174 44783520 -99002935 - AluY SINE Alu 0 346 1 3465 239 81 4 chr12 44784076 44785146 -99001309 + L1PA15 LINE L1 3496 4649 -2916 5500 122 13 7 chr12 44785149 44785984 -99000471 + L1PA15 LINE L1 5321 6160 -5 * 6525 217 13 17 chr12 44785981 44787023 -98999432 + L1PA15 LINE L1 4694 5730 -1835 2500 89 0 9 chr12 44787023 44787371 -98999084 - L1PA8 LINE L1 0 6172 5828 6525 217 13 17 chr12 44787371 44787850 -98998605 + L1PA15 LINE L1 5730 6209 -1356 1828 166 12 12 chr12 44787849 44788193 -98998262 + L1PA15 LINE L1 6790 7133 -451 * 2533 165 5 2 chr12 44788249 44788691 -98997764 + L1PA15 LINE L1 7135 7577 -7 3236 286 103 25 chr12 44788695 44790587 -98995868 - L1MCb LINE L1 -866 5698 3660 762 177 64 18 chr12 44790587 44790915 -98995540 + MSTC LTR MaLR 1 428 0 2130 260 80 18 chr12 44790916 44791829 -98994626 - L1MCb LINE L1 -2901 3663 2694 256 188 0 29 chr12 44791829 44791898 -98994557 + MER4-int LTR ERV1 1114 1180 -5418 467 165 0 22 chr12 44791914 44792005 -98994450 + MLT1A2 LTR MaLR 286 374 0 334 185 131 62 chr12 44792006 44792136 -98994319 - L1MCb LINE L1 -4010 2554 2416 3668 207 93 142 chr12 44792141 44794161 -98992294 - L1MCb LINE L1 -4499 2065 3 1650 169 11 18 chr12 44794200 44794518 -98991937 - AluSx SINE Alu 0 316 1 231 269 154 19 chr12 44794961 44795065 -98991390 + MER5A DNA MER1_type 16 133 -56 295 303 204 43 chr12 44795254 44795847 -98990608 - L2 LINE L2 -81 3191 2500 180 0 0 0 chr12 44795861 44795881 -98990574 + (A)n Simple_repeat Simple_repeat 1 20 0 1585 176 17 35 chr12 44795893 44796183 -98990272 + AluJo SINE Alu 7 291 -21 2490 54 0 3 chr12 44796659 44796954 -98989501 - AluY SINE Alu -15 296 3 439 306 73 10 chr12 44798015 44798221 -98988234 + MIR SINE MIR 37 255 -7 201 224 0 0 chr12 44798889 44798947 -98987508 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 227 79 26 0 chr12 44799165 44799203 -98987252 + (TG)n Simple_repeat Simple_repeat 2 40 0 2734 351 44 34 chr12 44800308 44801244 -98985211 - ERVL LTR ERVL -1798 3966 3040 2285 107 72 17 chr12 44801244 44801589 -98984866 + THE1B LTR MaLR 1 364 0 2734 351 44 34 chr12 44801589 44802544 -98983911 - ERVL LTR ERVL -2724 3040 2057 491 191 76 70 chr12 44802571 44802865 -98983590 + MSTC LTR MaLR 1 345 -83 682 288 49 15 chr12 44802902 44803166 -98983289 - ERVL LTR ERVL -3131 1865 1593 272 325 0 0 chr12 44803380 44803457 -98982998 - ERVL LTR ERVL -3234 2530 2454 * 352 320 16 0 chr12 44803455 44803583 -98982872 - ERVL LTR ERVL -3689 1307 1178 541 285 70 17 chr12 44803587 44803759 -98982696 - LTR16A LTR ERVL -269 181 1 404 291 32 38 chr12 44804290 44804448 -98982007 + L2 LINE L2 2685 2841 -473 566 130 23 30 chr12 44804469 44804600 -98981855 - L1MA7 LINE L1 -1 6290 6161 219 146 0 0 chr12 44805442 44805483 -98980972 + (A)n Simple_repeat Simple_repeat 1 41 0 2271 101 16 0 chr12 44806683 44806990 -98979465 - AluSx SINE Alu 0 312 1 294 272 66 66 chr12 44807489 44807625 -98978830 + MER5B DNA MER1_type 2 137 -41 1028 282 93 19 chr12 44807627 44808003 -98978452 + MLT1J2 LTR MaLR 12 415 -35 331 307 87 55 chr12 44808041 44808295 -98978160 - L2 LINE L2 -563 2751 2490 456 259 20 80 chr12 44809966 44810167 -98976288 + MIR SINE MIR 33 221 -41 2108 28 0 0 chr12 44810790 44811039 -98975416 + L1PA4 LINE L1 5907 6155 0 218 200 0 0 chr12 44811039 44811079 -98975376 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr12 44812887 44812930 -98973525 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr12 44813329 44813362 -98973093 + (TG)n Simple_repeat Simple_repeat 2 34 0 30 59 0 0 chr12 44816198 44816249 -98970206 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr12 44816415 44816442 -98970013 + AT_rich Low_complexity Low_complexity 1 27 0 190 114 0 57 chr12 44816463 44816498 -98969957 + MIR SINE MIR 146 178 -84 530 265 122 16 chr12 44816772 44816961 -98969494 + MIR SINE MIR 53 261 -1 959 180 12 0 chr12 44817947 44818108 -98968347 - AluJ SINE Alu -14 298 136 386 339 55 12 chr12 44818391 44818556 -98967899 + MIR3 SINE MIR 23 194 -14 310 231 90 30 chr12 44818593 44818727 -98967728 + MIR SINE MIR 121 262 0 350 237 0 65 chr12 44819507 44819600 -98966855 + MIR3 SINE MIR 119 205 -3 257 327 73 18 chr12 44820962 44821072 -98965383 + L2 LINE L2 3147 3262 -10 793 263 31 0 chr12 44822836 44823031 -98963424 - MIR SINE MIR -15 247 43 447 289 33 22 chr12 44823486 44823666 -98962789 + MER5A DNA MER1_type 8 189 0 1046 142 0 0 chr12 44824200 44824348 -98962107 - AluJ SINE Alu -24 288 141 491 91 26 0 chr12 44824351 44824428 -98962027 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 742 185 15 0 chr12 44824430 44824560 -98961895 - AluJ SINE Alu -170 132 1 419 293 16 16 chr12 44824711 44824834 -98961621 + MER5A DNA MER1_type 37 159 -30 570 295 12 0 chr12 44825044 44825210 -98961245 + MER69A DNA AcHobo 8 175 -2 327 294 28 72 chr12 44826442 44826622 -98959833 + MLT1J2 LTR MaLR 59 230 -220 377 302 77 12 chr12 44826628 44826797 -98959658 + MLT1J1 LTR MaLR 264 443 -3 258 32 0 0 chr12 44828522 44828553 -98957902 + (TAA)n Simple_repeat Simple_repeat 2 32 0 426 39 0 0 chr12 44828893 44828945 -98957510 + (CA)n Simple_repeat Simple_repeat 1 52 0 2374 103 0 0 chr12 44829480 44829790 -98956665 + AluSx SINE Alu 1 310 -2 349 299 140 27 chr12 44830456 44830554 -98955901 - MIR SINE MIR -15 247 161 706 134 8 0 chr12 44830554 44830673 -98955782 - L1MA9 LINE L1 -10 6302 6183 349 299 140 27 chr12 44830673 44830795 -98955660 - MIR SINE MIR -101 161 2 183 129 0 0 chr12 44830934 44830965 -98955490 + (T)n Simple_repeat Simple_repeat 1 31 0 518 236 115 32 chr12 44832570 44832727 -98953728 + L2 LINE L2 3144 3313 0 2036 112 0 30 chr12 44832763 44833059 -98953396 + AluSx SINE Alu 20 306 -6 187 333 11 46 chr12 44835116 44835203 -98951252 + L3 LINE CR1 1493 1576 -1 808 297 50 21 chr12 44835219 44835596 -98950859 - L2 LINE L2 -102 3211 2824 * 2026 272 138 16 chr12 44835569 44836417 -98950038 - L2 LINE L2 -636 2678 1728 656 13 0 0 chr12 44837711 44837809 -98948646 + L1PA5 LINE L1 6061 6158 0 473 285 120 20 chr12 44837865 44838065 -98948390 - MIR SINE MIR -6 256 37 23 54 0 0 chr12 44838975 44839012 -98947443 + AT_rich Low_complexity Low_complexity 1 37 0 477 338 26 30 chr12 44840205 44840439 -98946016 - MIR SINE MIR 0 262 30 1167 118 0 53 chr12 44840543 44840730 -98945725 + AluSg/x SINE Alu 134 310 0 378 279 172 45 chr12 44841013 44841257 -98945198 - L2 LINE L2 -5 3308 3034 286 347 58 33 chr12 44841565 44841686 -98944769 - L2 LINE L2 -31 3241 3118 414 257 73 15 chr12 44841981 44842117 -98944338 - L2 LINE L2 -6 3307 3164 2009 116 46 0 chr12 44842979 44843263 -98943192 - AluSx SINE Alu -15 297 1 358 289 150 26 chr12 44843840 44844186 -98942269 + L1ME4a LINE L1 5605 5993 -128 207 285 172 26 chr12 44845050 44845201 -98941254 - L3 LINE CR1 -3 1574 1402 22 35 0 0 chr12 44845204 44845233 -98941222 + AT_rich Low_complexity Low_complexity 1 29 0 4695 127 17 5 chr12 44845233 44845981 -98940474 - L1PA16 LINE L1 -9 6157 5401 206 284 17 86 chr12 44845994 44846110 -98940345 - L3 LINE CR1 -168 1409 1302 362 341 123 49 chr12 44846126 44846922 -98939533 - L2 LINE L2 0 3272 2409 30 0 0 0 chr12 44848734 44848764 -98937691 + AT_rich Low_complexity Low_complexity 1 30 0 4014 25 0 0 chr12 44848764 44849240 -98937215 - L1PA4 LINE L1 -2029 4117 3642 10623 23 1 0 chr12 44849240 44851259 -98935196 + L1PA4 LINE L1 4125 6149 -6 233 0 62 0 chr12 44851265 44851297 -98935158 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 969 70 0 0 chr12 44851308 44851436 -98935019 - L1MA2 LINE L1 -4 6300 6173 6521 118 36 4 chr12 44851917 44853282 -98933173 + L1MA2 LINE L1 4868 6276 -28 237 98 0 0 chr12 44853334 44853375 -98933080 + L1MA3 LINE L1 6265 6305 0 390 326 69 14 chr12 44853652 44853796 -98932659 + L2 LINE L2 3121 3272 0 318 325 53 9 chr12 44855615 44855729 -98930726 - MER5B DNA MER1_type -52 126 8 286 264 23 23 chr12 44857546 44857633 -98928822 + MIR3 SINE MIR 117 203 -5 328 239 73 101 chr12 44858003 44858221 -98928234 - MIR SINE MIR -44 218 7 663 270 17 6 chr12 44859077 44859251 -98927204 - MER45A DNA AcHobo -2 176 1 1482 177 16 7 chr12 44859812 44860117 -98926338 - L1MB3 LINE L1 -2 6181 5874 1059 98 0 0 chr12 44860308 44860441 -98926014 + AluSx SINE Alu 1 133 -179 906 130 9 126 chr12 44860482 44860697 -98925758 + AluSx SINE Alu 112 301 -9 2197 180 27 66 chr12 44861977 44862259 -98924196 + L1PB4 LINE L1 5684 5975 -326 1586 179 35 41 chr12 44862259 44862549 -98923906 + AluJb SINE Alu 1 288 -24 2197 180 27 66 chr12 44862549 44862778 -98923677 + L1PB4 LINE L1 5975 6300 -1 252 307 66 7 chr12 44863165 44863302 -98923153 - L1MB3 LINE L1 -2347 5461 5317 21 71 0 0 chr12 44863683 44863725 -98922730 + AT_rich Low_complexity Low_complexity 1 42 0 241 272 62 41 chr12 44863868 44864111 -98922344 - L1MB3 LINE L1 -1717 4429 4182 231 271 52 42 chr12 44864261 44864357 -98922098 + MLT2F LTR ERVL 38 134 -529 271 186 85 0 chr12 44864701 44864760 -98921695 + LTR67 LTR ERVL 492 555 -2 207 100 0 0 chr12 44865069 44865099 -98921356 + (TG)n Simple_repeat Simple_repeat 2 31 0 611 337 43 12 chr12 44865116 44865374 -98921081 - L3 LINE CR1 -832 745 480 889 235 53 90 chr12 44866104 44866483 -98919972 + MLT1A1 LTR MaLR 1 365 0 500 299 69 7 chr12 44867281 44867425 -98919030 - MIR SINE MIR -106 156 4 410 336 15 0 chr12 44868003 44868137 -98918318 + MIR SINE MIR 57 192 -70 196 373 66 57 chr12 44868775 44869019 -98917436 - L2 LINE L2 -47 3225 2980 309 291 140 14 chr12 44869458 44869669 -98916786 - MIR SINE MIR -14 248 8 272 298 57 75 chr12 44869685 44869802 -98916653 + L2 LINE L2 3036 3154 -159 2570 108 16 0 chr12 44869802 44870171 -98916284 - THE1C LTR MaLR 0 375 1 272 298 57 75 chr12 44870171 44870318 -98916137 + L2 LINE L2 3154 3295 -18 399 21 0 0 chr12 44870799 44870847 -98915608 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 275 108 8 chr12 44871317 44871437 -98915018 - MIR SINE MIR -73 189 58 27 49 0 0 chr12 44871577 44871618 -98914837 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr12 44872353 44872382 -98914073 + AT_rich Low_complexity Low_complexity 1 29 0 1526 132 69 23 chr12 44872896 44873200 -98913255 + MER33 DNA MER1_type 7 324 0 3387 152 52 27 chr12 44873318 44873978 -98912477 + L1MB3 LINE L1 5408 6083 -100 624 229 14 0 chr12 44873978 44874118 -98912337 - MER31B LTR ERV1 0 466 325 329 271 178 68 chr12 44874138 44874419 -98912036 - L3 LINE CR1 -495 1082 771 186 305 127 51 chr12 44875217 44875335 -98911120 - L2 LINE L2 0 3272 3146 210 297 161 25 chr12 44876795 44876913 -98909542 - L2 LINE L2 -492 2822 2689 619 299 47 24 chr12 44876927 44877181 -98909274 - L3 LINE CR1 -221 1356 1097 280 0 0 48 chr12 44877353 44877395 -98909060 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1808 133 0 25 chr12 44877396 44877681 -98908774 - AluSx SINE Alu -34 278 1 357 315 1 30 chr12 44877877 44878058 -98908397 + L1ME4a LINE L1 5211 5386 -765 27 0 0 0 chr12 44878049 44878076 -98908379 + AT_rich Low_complexity Low_complexity 1 27 0 * 589 233 62 76 chr12 44878110 44878398 -98908057 + MER46C DNA MER2_type 12 295 -43 493 275 192 22 chr12 44878429 44878923 -98907532 + L1ME4a LINE L1 5405 5982 -139 383 326 59 0 chr12 44879029 44879164 -98907291 - L3 LINE CR1 -461 1116 974 1876 192 32 91 chr12 44880236 44880773 -98905682 - MLT1D LTR MaLR 0 505 1 436 335 164 33 chr12 44883150 44883785 -98902670 - L2 LINE L2 -601 2713 1996 12003 196 38 42 chr12 44883907 44885908 -98900547 + L1PA16 LINE L1 2 2011 -4858 1888 109 4 8 chr12 44885908 44886174 -98900281 + AluSq SINE Alu 44 308 -5 12003 196 38 42 chr12 44886174 44888848 -98897607 + L1PA16 LINE L1 2011 4352 -2517 1166 104 0 0 chr12 44888848 44889002 -98897453 + AluSg/x SINE Alu 156 309 -3 12003 196 38 42 chr12 44889002 44891499 -98894956 + L1PA16 LINE L1 4352 6860 -9 21 0 0 0 chr12 44891625 44891646 -98894809 + AT_rich Low_complexity Low_complexity 1 21 0 953 113 0 7 chr12 44891707 44891858 -98894597 + (TA)n Simple_repeat Simple_repeat 2 151 0 216 97 0 0 chr12 44892364 44892395 -98894060 + (TA)n Simple_repeat Simple_repeat 2 32 0 275 301 0 34 chr12 44892668 44892806 -98893649 - MER5A DNA MER1_type -48 141 1 2207 92 3 0 chr12 44892936 44893218 -98893237 - AluSp SINE Alu -30 283 1 450 208 21 76 chr12 44893847 44893991 -98892464 + MIR SINE MIR 119 254 -8 475 308 77 6 chr12 44894266 44894422 -98892033 + MIR3 SINE MIR 40 206 -2 2406 67 0 0 chr12 44894656 44894955 -98891500 + AluY SINE Alu 1 299 -12 185 330 41 62 chr12 44896896 44896993 -98889462 - L2 LINE L2 -52 3220 3126 210 259 0 0 chr12 44897167 44897225 -98889230 + (TA)n Simple_repeat Simple_repeat 2 59 0 4900 140 24 21 chr12 44897287 44898343 -98888112 - L1PA16 LINE L1 -8 7577 6487 7394 175 51 3 chr12 44898349 44899632 -98886823 - L1PA16 LINE L1 -6200 1365 22 521 157 0 0 chr12 44899693 44899782 -98886673 - L1PB4 LINE L1 -14 6142 6054 24 0 0 0 chr12 44900141 44900165 -98886290 + AT_rich Low_complexity Low_complexity 1 24 0 2339 80 3 20 chr12 44900225 44900527 -98885928 + AluSp SINE Alu 1 297 -16 227 263 0 0 chr12 44901841 44901898 -98884557 + A-rich Low_complexity Low_complexity 4 60 0 22 70 0 0 chr12 44902811 44902854 -98883601 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr12 44902905 44902945 -98883510 + AT_rich Low_complexity Low_complexity 1 40 0 2281 102 0 7 chr12 44904141 44904445 -98882010 + AluSx SINE Alu 1 302 -10 203 271 0 47 chr12 44905138 44905245 -98881210 + A-rich Low_complexity Low_complexity 6 107 0 21 36 0 0 chr12 44905506 44905534 -98880921 + AT_rich Low_complexity Low_complexity 1 28 0 2150 302 97 9 chr12 44906465 44907433 -98879022 + L1M3a LINE L1 359 1129 -5174 12791 214 62 28 chr12 44907499 44908065 -98878390 + L1MA9 LINE L1 806 1351 -5197 1804 146 7 24 chr12 44908065 44908373 -98878082 + AluSx SINE Alu 1 303 0 12791 214 62 28 chr12 44908373 44908591 -98877864 + L1MA9 LINE L1 1351 1560 -4988 3976 165 41 17 chr12 44908591 44909306 -98877149 + MER44D DNA MER2_type 1 604 -1 12791 214 62 28 chr12 44909306 44912635 -98873820 + L1MA9 LINE L1 1560 4774 -1774 1351 225 10 23 chr12 44912635 44912942 -98873513 + AluJo SINE Alu 1 303 -9 12791 214 62 28 chr12 44912942 44913740 -98872715 + L1MA9 LINE L1 4774 5543 -1005 2154 92 37 3 chr12 44913740 44914034 -98872421 + AluSg SINE Alu 7 310 0 12791 214 62 28 chr12 44914034 44914308 -98872147 + L1MA9 LINE L1 5543 5806 -742 369 0 0 0 chr12 44914308 44914349 -98872106 + (CA)n Simple_repeat Simple_repeat 2 42 0 12791 214 62 28 chr12 44914349 44914859 -98871596 + L1MA9 LINE L1 5806 6547 -1 22 56 0 0 chr12 44914903 44914939 -98871516 + AT_rich Low_complexity Low_complexity 1 36 0 201 292 76 76 chr12 44915617 44915761 -98870694 - MIR SINE MIR -35 227 84 30 45 0 0 chr12 44917225 44917269 -98869186 + AT_rich Low_complexity Low_complexity 1 44 0 201 265 103 0 chr12 44918466 44918534 -98867921 + MER91C DNA MER1_type 52 126 -14 2488 96 3 33 chr12 44919115 44919243 -98867212 - THE1A LTR MaLR 0 355 225 2311 90 3 0 chr12 44919243 44919542 -98866913 - AluSc SINE Alu -9 300 1 2488 96 3 33 chr12 44919542 44919779 -98866676 - THE1A LTR MaLR -130 225 1 11425 91 22 0 chr12 44919779 44921325 -98865130 - THE1A-int LTR MaLR 0 1580 1 2476 91 41 0 chr12 44921325 44921666 -98864789 - THE1A LTR MaLR 0 355 1 231 381 108 0 chr12 44922860 44922999 -98863456 - L2 LINE L2 -8 3264 3111 192 380 99 45 chr12 44923138 44923715 -98862740 - L2 LINE L2 -785 2529 1922 2239 106 3 3 chr12 44923761 44924072 -98862383 + AluSx SINE Alu 1 311 -1 1423 238 63 58 chr12 44925268 44925513 -98860942 + MLT1E3 LTR MaLR 3 245 -379 2448 77 7 0 chr12 44925513 44925813 -98860642 + AluSg SINE Alu 1 302 -8 1423 238 63 58 chr12 44925813 44926211 -98860244 + MLT1E3 LTR MaLR 245 624 0 366 23 0 0 chr12 44926641 44926684 -98859771 + (CA)n Simple_repeat Simple_repeat 2 44 0 9584 139 13 15 chr12 44926780 44926794 -98859661 - L1MA2 LINE L1 -1 6303 6290 3832 136 17 17 chr12 44926794 44927487 -98858968 - L1MA8 LINE L1 -5 6286 5594 9584 139 13 15 chr12 44927487 44930207 -98856248 - L1MA2 LINE L1 -14 6290 3573 7293 33 13 3 chr12 44930207 44931247 -98855208 - L1PA5 LINE L1 -11 6143 5096 9584 139 13 15 chr12 44931247 44931381 -98855074 - L1MA2 LINE L1 -2731 3573 3440 2685 185 26 1 chr12 44931380 44932181 -98854274 - L1MA8 LINE L1 -705 5607 4783 * 200 219 0 0 chr12 44932248 44932289 -98854166 + GA-rich Low_complexity Low_complexity 1 41 0 3977 167 2 70 chr12 44932385 44933302 -98853153 + L1 LINE L1 3631 4485 -1661 309 361 9 9 chr12 44933340 44933448 -98853007 - MIR SINE MIR -149 113 6 22 35 0 0 chr12 44933853 44933882 -98852573 + AT_rich Low_complexity Low_complexity 1 29 0 228 128 85 0 chr12 44934044 44934091 -98852364 + A-rich Low_complexity Low_complexity 1 51 0 265 243 112 9 chr12 44934472 44934579 -98851876 + L1ME3A LINE L1 5828 5945 -225 313 272 22 83 chr12 44934582 44934762 -98851693 + L1ME3A LINE L1 5906 6074 -96 240 200 67 58 chr12 44934764 44934884 -98851571 + L1ME LINE L1 5342 5462 -702 236 253 37 25 chr12 44934910 44935072 -98851383 + (TA)n Simple_repeat Simple_repeat 1 164 0 2009 133 0 20 chr12 44935131 44935431 -98851024 + AluSx SINE Alu 1 294 -18 2757 212 47 17 chr12 44935513 44936215 -98850240 + L1MA10 LINE L1 5594 6316 -18 4169 198 21 24 chr12 44936227 44937983 -98848472 + L1MB5 LINE L1 4319 6174 0 746 322 113 8 chr12 44938001 44938392 -98848063 + L2 LINE L2 2530 2961 -353 328 246 363 11 chr12 44938577 44938756 -98847699 + MIR SINE MIR 21 262 0 21 0 0 0 chr12 44939731 44939752 -98846703 + AT_rich Low_complexity Low_complexity 1 21 0 3085 46 31 5 chr12 44939958 44940349 -98846106 - L1P3 LINE L1 -388 5766 5366 1700 73 0 9 chr12 44940688 44940906 -98845549 + AluSc SINE Alu 1 216 -93 180 231 182 33 chr12 44941118 44941239 -98845216 + MIR SINE MIR 14 152 -110 312 325 163 15 chr12 44942205 44942408 -98844047 + MIR SINE MIR 2 234 -28 21 36 0 0 chr12 44942430 44942458 -98843997 + AT_rich Low_complexity Low_complexity 1 28 0 375 256 95 66 chr12 44944115 44944355 -98842100 + MIR SINE MIR 6 261 -1 637 195 74 0 chr12 44944578 44944727 -98841728 - MER33 DNA MER1_type -156 168 9 320 309 13 7 chr12 44947304 44947453 -98839002 + (TA)n Simple_repeat Simple_repeat 2 151 0 25 0 0 0 chr12 44947535 44947560 -98838895 + AT_rich Low_complexity Low_complexity 1 25 0 372 308 40 40 chr12 44947831 44948084 -98838371 - L1ME4a LINE L1 -128 5993 5741 1226 74 16 2 chr12 44948133 44948303 -98838152 - L1P1 LINE L1 -705 5450 5278 5086 36 0 0 chr12 44948303 44948906 -98837549 + L1PA4 LINE L1 5542 6148 -7 1226 74 16 2 chr12 44948906 44948925 -98837530 - L1P1 LINE L1 -877 5278 5261 419 300 81 33 chr12 44948910 44949243 -98837212 - L1ME4a LINE L1 -444 5677 5329 * 21 0 0 0 chr12 44949472 44949493 -98836962 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 44949693 44949735 -98836720 + (TG)n Simple_repeat Simple_repeat 2 43 0 408 315 112 25 chr12 44949744 44949941 -98836514 + MIR SINE MIR 2 215 -47 21 57 0 0 chr12 44950306 44950341 -98836114 + AT_rich Low_complexity Low_complexity 1 35 0 255 290 0 14 chr12 44950557 44950626 -98835829 + CT-rich Low_complexity Low_complexity 2 69 0 1780 161 7 0 chr12 44951037 44951347 -98835108 - AluSx SINE Alu 0 312 1 186 382 38 8 chr12 44951351 44951482 -98834973 - L2 LINE L2 -253 3019 2885 6720 74 6 1 chr12 44952552 44954195 -98832260 - L1PA8 LINE L1 -3 6169 4523 768 160 15 0 chr12 44954420 44954551 -98831904 + MSTA LTR MaLR 213 345 -83 272 299 72 0 chr12 44955131 44955228 -98831227 + MER117 DNA MER1_type 45 148 -49 204 257 86 29 chr12 44955242 44955312 -98831143 + MER91C DNA MER1_type 21 94 -46 299 213 0 0 chr12 44955876 44955937 -98830518 - L1M LINE L1 -907 5427 5367 858 182 42 0 chr12 44955937 44956129 -98830326 + L1MA6 LINE L1 6097 6296 -4 23 54 0 0 chr12 44957248 44957285 -98829170 + AT_rich Low_complexity Low_complexity 1 37 0 5872 175 21 12 chr12 44957880 44959084 -98827371 + L1MA7 LINE L1 4155 5369 -777 5285 142 24 20 chr12 44959146 44960075 -98826380 + L1MA7 LINE L1 5353 6284 -7 25 51 0 0 chr12 44960117 44960156 -98826299 + AT_rich Low_complexity Low_complexity 1 39 0 2683 91 21 0 chr12 44960354 44960788 -98825667 + L1PA13 LINE L1 5193 5635 -526 341 131 49 8 chr12 44960809 44960931 -98825524 + (TA)n Simple_repeat Simple_repeat 1 127 0 3455 98 4 6 chr12 44960931 44961440 -98825015 + L1PA13 LINE L1 5656 6163 0 419 293 105 42 chr12 44961577 44962102 -98824353 + L1MC4a LINE L1 4631 5188 -958 629 268 89 71 chr12 44962109 44962267 -98824188 + L1MC4a LINE L1 5380 5534 -2274 1195 208 81 22 chr12 44962267 44962589 -98823866 - MER2 DNA MER2_type -2 342 2 629 268 89 71 chr12 44962589 44962822 -98823633 + L1MC4a LINE L1 5534 5778 -2030 272 287 54 31 chr12 44962826 44962955 -98823500 + L1MC4a LINE L1 5830 5961 -1847 749 296 143 28 chr12 44963066 44963387 -98823068 + MLT1J LTR MaLR 3 360 -151 1057 328 154 29 chr12 44963932 44964657 -98821798 + L3 LINE CR1 209 1024 -553 234 0 0 0 chr12 44964898 44964924 -98821531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 908 165 0 43 chr12 44964925 44965089 -98821366 - FAM SINE Alu -17 158 2 344 296 9 86 chr12 44965737 44965835 -98820620 - L2 LINE L2 0 3313 3240 1879 144 10 7 chr12 44965835 44966133 -98820322 - AluSx SINE Alu -13 299 1 344 296 9 86 chr12 44966133 44966254 -98820201 - L2 LINE L2 -73 3240 3111 323 322 51 8 chr12 44966375 44966493 -98819962 + L1ME LINE L1 566 688 -5946 647 310 76 58 chr12 44966803 44967363 -98819092 + L1ME LINE L1 970 1707 -4985 180 0 0 0 chr12 44967363 44967383 -98819072 + (TC)n Simple_repeat Simple_repeat 2 21 0 647 310 76 58 chr12 44967383 44967524 -98818931 + L1ME LINE L1 1707 1844 -4848 283 210 82 108 chr12 44967524 44967719 -98818736 + L1M2 LINE L1 2322 2511 -4338 242 280 27 0 chr12 44967773 44967848 -98818607 + L1ME LINE L1 1918 1994 -4652 845 249 97 50 chr12 44968104 44968806 -98817649 + L1ME LINE L1 2593 3327 -3317 1324 273 72 25 chr12 44968820 44969659 -98816796 + L1ME LINE L1 3469 4346 -2298 351 311 36 16 chr12 44969660 44969853 -98816602 + L1ME3A LINE L1 5688 5884 -286 1292 263 106 62 chr12 44970176 44971360 -98815095 + L1ME LINE L1 4338 5573 -1071 595 284 120 22 chr12 44971454 44971679 -98814776 - MIR SINE MIR 0 262 16 1136 269 116 18 chr12 44971717 44972371 -98814084 + L1ME LINE L1 5734 6460 -208 334 315 62 8 chr12 44973335 44973465 -98812990 + MIR SINE MIR 62 198 -64 215 213 21 0 chr12 44974203 44974250 -98812205 + L2 LINE L2 2299 2346 -968 898 308 168 32 chr12 44974281 44975201 -98811254 + L2 LINE L2 2250 3305 -8 643 295 199 12 chr12 44975214 44975556 -98810899 + L2 LINE L2 2487 2892 -422 182 262 0 0 chr12 44975585 44975627 -98810828 + MIR SINE MIR 100 141 -67 248 316 77 8 chr12 44975655 44975772 -98810683 - L2 LINE L2 -10 3303 3179 1361 160 91 0 chr12 44976114 44976345 -98810110 - AluJb SINE Alu -24 288 37 2257 145 29 3 chr12 44976648 44977028 -98809427 - MLT1B LTR MaLR 0 390 1 207 0 0 0 chr12 44977047 44977070 -98809385 + (CA)n Simple_repeat Simple_repeat 2 24 0 228 261 183 17 chr12 44977595 44977710 -98808745 + MIR SINE MIR 122 255 -7 357 125 0 0 chr12 44979011 44979067 -98807388 + (GGA)n Simple_repeat Simple_repeat 3 58 0 288 268 0 0 chr12 44979363 44979434 -98807021 + (TG)n Simple_repeat Simple_repeat 2 72 0 1337 69 11 5 chr12 44980339 44980528 -98805927 + L1PA13 LINE L1 5973 6162 -1 2328 98 0 0 chr12 44981572 44981868 -98804587 + AluSx SINE Alu 1 296 -16 512 200 0 0 chr12 44982402 44982497 -98803958 - L1MC3 LINE L1 -488 7297 7203 506 206 20 10 chr12 44982497 44982599 -98803856 - MLT1F1 LTR MaLR -430 137 35 3421 205 15 61 chr12 44982599 44983483 -98802972 - L1MC3 LINE L1 -688 7097 6255 225 303 230 7 chr12 44983678 44983830 -98802625 - L3 LINE CR1 -3 1574 1389 268 252 105 84 chr12 44984311 44984454 -98802001 + MIR3 SINE MIR 31 176 -32 262 358 41 0 chr12 44984668 44984791 -98801664 + MIR SINE MIR 126 253 -9 2144 131 53 59 chr12 44984907 44985327 -98801128 - L1 LINE L1 -1966 4180 3762 2212 107 7 0 chr12 44985327 44985625 -98800830 - AluSx SINE Alu -8 304 5 2144 131 53 59 chr12 44985625 44985677 -98800778 - L1 LINE L1 -2384 3762 3711 460 258 115 95 chr12 44987073 44987265 -98799190 - MLT1I LTR MaLR -8 401 214 2156 127 0 0 chr12 44987265 44987573 -98798882 + AluSg SINE Alu 1 308 -2 460 258 115 95 chr12 44987573 44987771 -98798684 - MLT1I LTR MaLR -195 214 3 2075 106 3 67 chr12 44989103 44989432 -98797023 + AluSx SINE Alu 1 308 -4 2462 108 13 5 chr12 44989665 44990037 -98796418 - THE1C LTR MaLR 0 375 1 273 314 25 42 chr12 44990337 44990455 -98796000 + MIR SINE MIR 146 261 -1 537 176 11 0 chr12 44990875 44990966 -98795489 - Tigger7 DNA MER2_type 0 2487 2396 2795 163 33 30 chr12 44990974 44991483 -98794972 - Tigger7 DNA MER2_type -1976 511 1 391 290 62 0 chr12 44992823 44992953 -98793502 - MIR SINE MIR -51 211 75 257 327 0 0 chr12 44993114 44993215 -98793240 - L1MC4 LINE L1 -1340 6702 6602 353 206 10 0 chr12 44993357 44993459 -98792996 + CT-rich Low_complexity Low_complexity 3 105 0 1323 86 0 0 chr12 44994032 44994207 -98792248 - L1PA5 LINE L1 -6 6148 5974 913 263 25 13 chr12 44994793 44995029 -98791426 + MIR SINE MIR 13 251 -11 344 300 199 8 chr12 44995070 44995337 -98791118 - L1MC4 LINE L1 -1899 5909 5592 608 220 140 13 chr12 44995374 44995524 -98790931 - FRAM SINE Alu -4 172 4 210 91 0 0 chr12 44996033 44996066 -98790389 + (TC)n Simple_repeat Simple_repeat 2 34 0 375 154 15 0 chr12 44996115 44996180 -98790275 - MIR SINE MIR -89 173 108 480 235 117 25 chr12 44996515 44996711 -98789744 - L2 LINE L2 -2 3311 3098 205 343 48 19 chr12 44997002 44997107 -98789348 + MIR SINE MIR 44 151 -111 1814 138 65 30 chr12 44997950 44998320 -98788135 + L1 LINE L1 3798 4180 -1966 262 358 41 0 chr12 44998436 44998559 -98787896 - MIR SINE MIR -9 253 126 273 243 104 90 chr12 44998772 44998916 -98787539 - MIR3 SINE MIR -32 176 31 225 303 230 7 chr12 44999397 44999549 -98786906 + L3 LINE CR1 1389 1574 -3 3421 205 15 61 chr12 44999744 45000628 -98785827 + L1MC3 LINE L1 6255 7097 -688 506 206 20 10 chr12 45000628 45000730 -98785725 + MLT1F1 LTR MaLR 35 137 -430 512 200 0 0 chr12 45000730 45000825 -98785630 + L1MC3 LINE L1 7203 7297 -488 2190 108 0 0 chr12 45001364 45001651 -98784804 - AluSx SINE Alu -21 291 5 227 109 43 22 chr12 45001657 45001703 -98784752 - L1 LINE L1 -2389 3757 3711 460 258 115 95 chr12 45003100 45003292 -98783163 - MLT1I LTR MaLR -8 401 214 2156 127 0 0 chr12 45003292 45003600 -98782855 + AluSg SINE Alu 1 308 -2 460 258 115 95 chr12 45003600 45003798 -98782657 - MLT1I LTR MaLR -195 214 3 2075 106 3 67 chr12 45005130 45005459 -98780996 + AluSx SINE Alu 1 308 -4 2462 108 13 5 chr12 45005692 45006064 -98780391 - THE1C LTR MaLR 0 375 1 273 314 25 42 chr12 45006364 45006482 -98779973 + MIR SINE MIR 146 261 -1 537 176 11 0 chr12 45006902 45006993 -98779462 - Tigger7 DNA MER2_type 0 2487 2396 2795 163 33 30 chr12 45007001 45007510 -98778945 - Tigger7 DNA MER2_type -1976 511 1 198 0 0 0 chr12 45010848 45010870 -98775585 + (A)n Simple_repeat Simple_repeat 1 22 0 290 303 40 0 chr12 45011612 45011711 -98774744 - MIR SINE MIR -82 180 78 330 292 8 50 chr12 45011716 45011836 -98774619 + MIR SINE MIR 18 132 -130 5896 183 26 16 chr12 45012618 45013133 -98773322 - L1PA15 LINE L1 -6 6159 5650 1963 138 47 97 chr12 45013133 45013459 -98772996 + MER9 LTR ERVK 1 291 -220 188 83 0 28 chr12 45013459 45013495 -98772960 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1963 138 47 97 chr12 45013495 45013706 -98772749 + MER9 LTR ERVK 291 511 0 5896 183 26 16 chr12 45013706 45014149 -98772306 - L1PA15 LINE L1 -515 5650 5213 2272 130 31 0 chr12 45014149 45014502 -98771953 - THE1B LTR MaLR 0 364 1 5896 183 26 16 chr12 45014502 45015676 -98770779 - L1PA15 LINE L1 -952 5213 3995 4507 237 26 16 chr12 45015675 45016479 -98769976 + L1P LINE L1 2674 3468 -2678 * 234 0 0 0 chr12 45016479 45016505 -98769950 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1771 159 7 27 chr12 45016506 45016807 -98769648 + AluSx SINE Alu 1 295 -17 4507 237 26 16 chr12 45016807 45017288 -98769167 + L1P LINE L1 3467 3974 -2172 317 255 56 68 chr12 45017862 45018023 -98768432 - HAL1b LINE L1 -814 534 376 2120 116 0 3 chr12 45019445 45019780 -98766675 - AluSx SINE Alu 0 312 1 1618 218 54 18 chr12 45020709 45021099 -98765356 + LTR52 LTR ERVL 15 418 -3 359 273 76 23 chr12 45023234 45023447 -98763008 - L1MEd LINE L1 -2881 3248 3019 276 278 119 63 chr12 45023461 45023504 -98762951 - L1MEd LINE L1 -3609 2520 2481 1526 178 62 17 chr12 45023504 45023677 -98762778 - AluJo SINE Alu -7 305 112 450 0 0 0 chr12 45023677 45023727 -98762728 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1526 178 62 17 chr12 45023727 45023845 -98762610 - AluJo SINE Alu -200 112 1 276 278 119 63 chr12 45023845 45024053 -98762402 - L1MEd LINE L1 -3648 2481 2255 1431 232 62 7 chr12 45024107 45024618 -98761837 + MLT1E2 LTR MaLR 40 626 0 1687 127 15 19 chr12 45024790 45025058 -98761397 - AluJb SINE Alu -25 287 21 1383 283 100 41 chr12 45025423 45026296 -98760159 - L1MEd LINE L1 -5120 999 76 22 0 0 0 chr12 45026301 45026323 -98760132 + AT_rich Low_complexity Low_complexity 1 22 0 320 283 50 88 chr12 45026746 45026905 -98759550 - MIR SINE MIR -93 169 17 21 95 0 0 chr12 45026953 45027016 -98759439 + AT_rich Low_complexity Low_complexity 1 63 0 219 278 37 0 chr12 45027130 45027184 -98759271 - MIR SINE MIR -115 147 92 27 29 0 0 chr12 45027686 45027720 -98758735 + AT_rich Low_complexity Low_complexity 1 34 0 356 143 14 0 chr12 45028204 45028274 -98758181 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2467 119 11 19 chr12 45028274 45028651 -98757804 + THE1C LTR MaLR 2 375 0 231 107 24 48 chr12 45028680 45028764 -98757691 + (TA)n Simple_repeat Simple_repeat 1 82 0 399 265 0 0 chr12 45028810 45028912 -98757543 - MER46C DNA MER2_type -145 193 92 294 296 72 40 chr12 45029132 45029257 -98757198 - MER5A DNA MER1_type -18 171 43 275 322 62 27 chr12 45029138 45029284 -98757171 + MER5B DNA MER1_type 25 175 -3 * 548 232 82 119 chr12 45030406 45030422 -98756033 - L2 LINE L2 -2 3311 3296 1304 172 0 15 chr12 45030422 45030695 -98755760 + L1MA4 LINE L1 6027 6295 -5 548 232 82 119 chr12 45030695 45031006 -98755449 - L2 LINE L2 -17 3296 2996 195 344 54 43 chr12 45032005 45032098 -98754357 + L2 LINE L2 3133 3226 -46 25 31 0 0 chr12 45032262 45032294 -98754161 + AT_rich Low_complexity Low_complexity 1 32 0 429 20 0 0 chr12 45033706 45033756 -98752699 + (TG)n Simple_repeat Simple_repeat 2 51 0 249 264 104 62 chr12 45034546 45034690 -98751765 - L2 LINE L2 -188 3084 2935 1681 199 77 136 chr12 45034739 45035255 -98751200 - MLT1E2 LTR MaLR 0 626 154 2060 143 3 0 chr12 45035255 45035556 -98750899 - AluSx SINE Alu -8 304 3 1681 199 77 136 chr12 45035556 45035702 -98750753 - MLT1E2 LTR MaLR -472 154 1 262 187 149 47 chr12 45036455 45036562 -98749893 + L1ME4a LINE L1 5981 6098 -23 1407 29 0 0 chr12 45037018 45037190 -98749265 - L1P LINE L1 -2106 4040 3869 11047 29 1 0 chr12 45037190 45039269 -98747186 + L1PA2 LINE L1 4076 6155 0 221 349 12 0 chr12 45039269 45039355 -98747100 + L3 LINE CR1 435 521 -1056 360 64 0 0 chr12 45039363 45039410 -98747045 + (ATG)n Simple_repeat Simple_repeat 2 48 0 361 270 147 38 chr12 45039471 45039813 -98746642 + MLT1J1 LTR MaLR 50 446 0 1988 194 27 96 chr12 45039844 45040396 -98746059 + MLT2B3 LTR ERVL 1 514 -40 2243 107 3 0 chr12 45040412 45040710 -98745745 - AluSq SINE Alu -14 299 1 373 82 0 0 chr12 45040725 45040774 -98745681 + Ricksha DNA DNA 856 904 -2342 331 278 65 9 chr12 45040778 45040886 -98745569 - MIR SINE MIR -25 237 124 1152 330 148 18 chr12 45041017 45041823 -98744632 + L3 LINE CR1 522 1468 -109 29 0 0 0 chr12 45042299 45042328 -98744127 + AT_rich Low_complexity Low_complexity 1 29 0 505 321 55 21 chr12 45043206 45043443 -98743012 + MIR SINE MIR 18 262 0 591 161 21 6 chr12 45043837 45044002 -98742453 - L1MA7 LINE L1 0 6291 6011 180 264 42 69 chr12 45044145 45044217 -98742238 + MIR SINE MIR 82 151 -111 7894 176 63 16 chr12 45044255 45045948 -98740507 + L1MCa LINE L1 48 2012 -4595 242 267 69 69 chr12 45045957 45046073 -98740382 + MIR SINE MIR 137 252 -10 205 293 0 17 chr12 45046180 45046238 -98740217 + GA-rich Low_complexity Low_complexity 4 60 0 2946 72 3 3 chr12 45047395 45047770 -98738685 - THE1C LTR MaLR 0 375 1 323 311 8 8 chr12 45047934 45048066 -98738389 + GA-rich Low_complexity Low_complexity 1 132 0 540 311 145 15 chr12 45048153 45048484 -98737971 - L3b LINE CR1 -98 1485 1112 1701 180 47 12 chr12 45049304 45049626 -98736829 + MLT1A1 LTR MaLR 33 365 0 29 0 0 0 chr12 45051225 45051254 -98735201 + AT_rich Low_complexity Low_complexity 1 29 0 407 220 128 28 chr12 45052244 45052353 -98734102 + L2 LINE L2 3153 3272 0 221 56 0 28 chr12 45052622 45052658 -98733797 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 11390 31 5 0 chr12 45052658 45054746 -98731709 - L1PA4 LINE L1 -24 6131 4033 195 263 0 0 chr12 45055624 45055662 -98730793 + L2 LINE L2 3210 3247 -25 2417 69 69 6 chr12 45059153 45059485 -98726970 + THE1A LTR MaLR 1 353 -2 201 39 0 0 chr12 45059638 45059664 -98726791 + (A)n Simple_repeat Simple_repeat 1 26 0 1988 129 0 11 chr12 45059764 45060105 -98726350 + AluSx SINE Alu 1 338 0 850 193 96 0 chr12 45060138 45060325 -98726130 + L1PA16 LINE L1 5959 6163 -3 691 201 82 0 chr12 45060591 45060750 -98725705 + MER58B DNA MER1_type 169 340 -1 909 242 48 8 chr12 45062279 45062527 -98723928 + Charlie1 DNA MER1_type 1 258 -2503 410 152 0 0 chr12 45062519 45062585 -98723870 + Charlie1 DNA MER1_type 2695 2760 -1 * 1523 198 0 14 chr12 45062739 45063027 -98723428 + AluJb SINE Alu 1 284 -28 402 21 0 0 chr12 45063028 45063075 -98723380 + (CATA)n Simple_repeat Simple_repeat 2 48 0 228 83 124 41 chr12 45063451 45063572 -98722883 + (TTATA)n Simple_repeat Simple_repeat 1 131 0 2045 133 0 6 chr12 45063989 45064304 -98722151 + AluSq SINE Alu 1 313 0 2165 116 3 3 chr12 45064342 45064645 -98721810 + AluSx SINE Alu 1 303 -9 310 241 161 6 chr12 45064819 45064981 -98721474 - L1ME4a LINE L1 -248 5873 5687 2105 110 3 13 chr12 45065330 45065630 -98720825 + AluSc SINE Alu 1 297 -12 258 204 136 34 chr12 45066520 45066608 -98719847 - L2 LINE L2 -5 3308 3212 181 213 410 0 chr12 45066801 45066862 -98719593 - MIR SINE MIR -10 252 167 26 50 0 0 chr12 45067371 45067411 -98719044 + AT_rich Low_complexity Low_complexity 1 40 0 931 233 48 127 chr12 45067930 45068141 -98718314 + L1ME3A LINE L1 5282 5508 -662 1784 166 0 22 chr12 45068141 45068454 -98718001 + AluJb SINE Alu 1 306 -6 931 233 48 127 chr12 45068454 45068865 -98717590 + L1ME3A LINE L1 5508 5855 -315 228 200 0 0 chr12 45068920 45068970 -98717485 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 37 23 0 0 chr12 45069807 45069851 -98716604 + AT_rich Low_complexity Low_complexity 1 44 0 1598 189 14 59 chr12 45070899 45071253 -98715202 - MER58B DNA MER1_type 0 341 4 2713 87 14 3 chr12 45071326 45071695 -98714760 + THE1C LTR MaLR 1 373 -2 462 113 63 5 chr12 45071857 45072082 -98714373 + (TA)n Simple_repeat Simple_repeat 1 238 0 309 68 115 7 chr12 45072100 45072248 -98714207 + (TA)n Simple_repeat Simple_repeat 1 164 0 1607 43 5 24 chr12 45072523 45072734 -98713721 + L1PA4 LINE L1 5949 6155 0 557 255 14 60 chr12 45073662 45073878 -98712577 + LTR16A1 LTR ERVL 251 456 -1 28 48 0 0 chr12 45074588 45074630 -98711825 + AT_rich Low_complexity Low_complexity 1 42 0 416 323 0 15 chr12 45075273 45075406 -98711049 - L2 LINE L2 0 3313 3183 2331 98 13 0 chr12 45076127 45076434 -98710021 - AluSx SINE Alu -1 311 1 234 276 323 0 chr12 45077593 45077720 -98708735 - MIR3 SINE MIR -11 197 30 22 0 0 0 chr12 45078046 45078068 -98708387 + AT_rich Low_complexity Low_complexity 1 22 0 192 321 49 56 chr12 45078576 45078738 -98707717 - MIR SINE MIR -69 193 33 2703 26 0 0 chr12 45078908 45079212 -98707243 - AluY SINE Alu -7 304 1 212 100 25 0 chr12 45080203 45080243 -98706212 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 219 267 117 75 chr12 45081230 45081350 -98705105 - MIR SINE MIR -71 191 67 418 347 59 13 chr12 45081832 45082071 -98704384 - MIR SINE MIR -4 258 9 1191 116 0 0 chr12 45082669 45082841 -98703614 + L1PA13 LINE L1 5973 6144 -19 23 54 0 0 chr12 45083643 45083680 -98702775 + AT_rich Low_complexity Low_complexity 1 37 0 277 382 71 4 chr12 45085920 45086145 -98700310 + MIR SINE MIR 9 248 -14 2151 128 33 22 chr12 45086220 45086580 -98699875 + THE1B LTR MaLR 1 364 0 196 157 59 0 chr12 45088428 45088479 -98697976 + CT-rich Low_complexity Low_complexity 2 55 0 187 229 21 21 chr12 45088693 45088741 -98697714 - L2 LINE L2 0 3313 3266 1074 163 28 28 chr12 45089681 45089896 -98696559 + AluJb SINE Alu 87 301 -11 372 338 108 65 chr12 45091326 45091791 -98694664 + HAL1 LINE L1 11 495 -2012 348 295 92 12 chr12 45092025 45092198 -98694257 + HAL1 LINE L1 767 953 -1554 1684 273 110 29 chr12 45092239 45093461 -98692994 + L1ME3 LINE L1 2210 3530 -2616 379 265 107 36 chr12 45093457 45093653 -98692802 + L1ME3 LINE L1 5756 5965 -197 * 440 225 11 0 chr12 45095580 45095669 -98690786 - L2 LINE L2 0 3313 3224 208 218 10 79 chr12 45095785 45095886 -98690569 + GA-rich Low_complexity Low_complexity 3 96 0 1537 182 64 72 chr12 45096127 45096175 -98690280 - MLT2C1 LTR ERVL -1 396 349 219 69 0 0 chr12 45096175 45096204 -98690251 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1537 182 64 72 chr12 45096204 45096421 -98690034 - MLT2C1 LTR ERVL -48 349 132 2085 130 3 0 chr12 45096421 45096714 -98689741 - AluSp SINE Alu -19 294 1 1537 182 64 72 chr12 45096714 45096837 -98689618 - MLT2C1 LTR ERVL -265 132 10 651 129 0 8 chr12 45097857 45097961 -98688494 + L1PA15 LINE L1 5676 5773 -348 14322 140 31 7 chr12 45097967 45098702 -98687753 + L1PA11 LINE L1 2726 3442 -2732 2406 51 0 10 chr12 45098702 45098996 -98687459 + AluY SINE Alu 1 291 -20 14322 140 31 7 chr12 45098996 45101710 -98684745 + L1PA11 LINE L1 3442 6173 -1 2373 127 10 20 chr12 45101710 45101767 -98684688 + L1PA15 LINE L1 5769 5825 -340 2334 104 3 0 chr12 45101767 45102075 -98684380 + AluY SINE Alu 1 309 -2 2373 127 10 20 chr12 45102075 45102415 -98684040 + L1PA15 LINE L1 5825 6165 0 1934 155 32 27 chr12 45102416 45102790 -98683665 - Tigger2a DNA MER2_type -56 378 3 2177 112 45 31 chr12 45102845 45103202 -98683253 + THE1B LTR MaLR 1 362 -2 545 301 17 23 chr12 45104246 45104419 -98682036 - MER5B DNA MER1_type -6 172 1 255 348 18 55 chr12 45105591 45105755 -98680700 + L2 LINE L2 2926 3083 -189 287 326 76 111 chr12 45106780 45108242 -98678213 - L2 LINE L2 -219 3053 1645 1787 54 0 0 chr12 45108653 45108875 -98677580 - L1PA5 LINE L1 -13 6141 5920 514 331 22 0 chr12 45108875 45109053 -98677402 + MER117 DNA MER1_type 16 197 0 200 269 10 87 chr12 45109440 45109544 -98676911 - MIR SINE MIR -97 165 70 25 31 0 0 chr12 45109839 45109871 -98676584 + AT_rich Low_complexity Low_complexity 1 32 0 43175 29 21 1 chr12 45109876 45115890 -98670565 + L1HS LINE L1 1 6139 -16 230 0 33 0 chr12 45115890 45115920 -98670535 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1444 168 3 36 chr12 45116320 45116624 -98669831 - AluSx SINE Alu -18 294 1 6993 50 1 5 chr12 45116776 45117649 -98668806 + L1PA7 LINE L1 5285 6154 0 521 248 13 65 chr12 45120788 45120833 -98665622 - MIR SINE MIR -108 154 108 835 250 11 0 chr12 45120833 45121009 -98665446 - MER45A DNA AcHobo 0 178 1 521 248 13 65 chr12 45121009 45121116 -98665339 - MIR SINE MIR -154 108 10 203 316 18 0 chr12 45121748 45121805 -98664650 + MIR SINE MIR 65 122 -140 24 53 0 0 chr12 45121848 45121886 -98664569 + AT_rich Low_complexity Low_complexity 1 38 0 534 263 0 8 chr12 45122020 45122153 -98664302 - MER94 DNA DNA -1 133 2 260 293 135 72 chr12 45122863 45123085 -98663370 - MIR SINE MIR -6 256 21 2258 102 0 13 chr12 45123246 45123551 -98662904 - AluSc SINE Alu -8 301 1 194 316 18 0 chr12 45123608 45123665 -98662790 + L2 LINE L2 3255 3312 -1 416 364 22 11 chr12 45124366 45124550 -98661905 + MER5A DNA MER1_type 1 186 -3 288 216 29 69 chr12 45124791 45124893 -98661562 + MIR SINE MIR 111 208 -54 343 233 117 19 chr12 45125638 45125741 -98660714 + MIR SINE MIR 34 146 -62 453 266 22 7 chr12 45126032 45126170 -98660285 + MLT1L LTR MaLR 237 458 -157 1714 177 0 7 chr12 45126172 45126454 -98660001 + AluJb SINE Alu 3 282 -30 946 296 29 13 chr12 45126646 45127050 -98659405 + L2 LINE L2 2679 3091 -222 15696 117 17 24 chr12 45127464 45129891 -98656564 + Tigger1 DNA MER2_type 1 2410 -8 1942 137 126 0 chr12 45130093 45130451 -98656004 + MER57A LTR ERV1 1 403 0 299 273 16 83 chr12 45130825 45130946 -98655509 - L2 LINE L2 -9 3304 3192 2097 95 20 30 chr12 45130956 45131261 -98655194 - AluSx SINE Alu -10 302 1 979 207 69 19 chr12 45131349 45131610 -98654845 - L1MA9 LINE L1 -38 6274 6001 2227 34 0 0 chr12 45132629 45132896 -98653559 + L1PA5 LINE L1 5888 6154 0 321 284 39 0 chr12 45135286 45135388 -98651067 + MIR SINE MIR 119 224 -38 211 396 18 18 chr12 45135871 45136035 -98650420 + L2 LINE L2 2885 3048 -224 186 264 176 22 chr12 45136173 45136264 -98650191 - MIR SINE MIR -10 252 148 1967 136 23 46 chr12 45137127 45137472 -98648983 + MER1B DNA MER1_type 1 337 0 204 343 48 19 chr12 45138542 45138647 -98647808 - MIR SINE MIR -111 151 44 480 235 117 25 chr12 45138939 45139135 -98647320 + L2 LINE L2 3098 3311 -2 377 154 15 0 chr12 45139470 45139535 -98646920 + MIR SINE MIR 108 173 -89 210 91 0 0 chr12 45139584 45139617 -98646838 + (GA)n Simple_repeat Simple_repeat 2 34 0 658 207 140 13 chr12 45140126 45140276 -98646179 + FRAM SINE Alu 4 172 -4 340 300 199 8 chr12 45140313 45140580 -98645875 + L1MC4a LINE L1 5592 5909 -1899 906 263 25 13 chr12 45140621 45140857 -98645598 - MIR SINE MIR -11 251 13 1356 77 0 11 chr12 45141443 45141626 -98644829 + L1PA5 LINE L1 5974 6154 0 1780 262 58 64 chr12 45142573 45143310 -98643145 + MER21B LTR ERV1 7 739 -124 518 300 32 32 chr12 45144245 45144435 -98642020 - MIR SINE MIR -54 208 19 201 121 0 0 chr12 45145031 45145064 -98641391 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2175 119 0 0 chr12 45145889 45146183 -98640272 + AluSx SINE Alu 1 294 -18 3769 73 0 23 chr12 45146800 45147320 -98639135 - L1PA8A LINE L1 0 6131 5624 1478 262 66 31 chr12 45147827 45148643 -98637812 + L1M4 LINE L1 2963 3807 -2339 332 324 43 72 chr12 45148663 45148870 -98637585 + L1ME3A LINE L1 248 448 -5671 636 292 83 13 chr12 45148876 45149177 -98637278 + L1ME3A LINE L1 498 819 -5300 277 148 0 19 chr12 45149178 45149232 -98637223 - MLT2A1 LTR ERVL 0 444 392 726 105 0 0 chr12 45149251 45149356 -98637099 - MLT2A1 LTR ERVL -339 105 1 18863 72 11 25 chr12 45149356 45150529 -98635926 - HERVL-A1 LTR ERVL 0 5654 4466 2003 109 0 4 chr12 45150529 45150804 -98635651 - AluSg SINE Alu -36 274 1 18863 72 11 25 chr12 45150804 45152158 -98634297 - HERVL-A1 LTR ERVL -1188 4466 3162 10459 74 27 1 chr12 45152145 45153517 -98632938 - HERVL-A1 LTR ERVL -4247 1407 1 * 2950 72 70 5 chr12 45153519 45153556 -98632899 - MLT2A1 LTR ERVL -2 442 409 306 0 0 0 chr12 45153556 45153590 -98632865 + (TG)n Simple_repeat Simple_repeat 2 35 0 2950 72 70 5 chr12 45153590 45153967 -98632488 - MLT2A1 LTR ERVL -35 409 1 31 58 0 0 chr12 45153977 45154029 -98632426 + AT_rich Low_complexity Low_complexity 1 52 0 237 242 39 62 chr12 45154050 45154178 -98632277 + L1ME3A LINE L1 895 1019 -5100 2109 188 243 7 chr12 45154184 45154727 -98631728 - L1P LINE L1 -1833 4313 3643 726 191 54 7 chr12 45154729 45154876 -98631579 + L1PA15 LINE L1 6008 6161 -4 335 309 55 25 chr12 45154924 45155038 -98631417 - L1M4 LINE L1 -3344 2802 2678 1755 41 5 0 chr12 45155038 45155257 -98631198 + L1PA4 LINE L1 5936 6155 0 335 309 55 25 chr12 45155257 45155343 -98631112 - L1M4 LINE L1 -3468 2678 2596 623 309 71 24 chr12 45155468 45155965 -98630490 + L1ME3A LINE L1 3873 4392 -1737 1140 206 19 26 chr12 45155974 45156358 -98630097 - MER63B DNA MER1_type 0 436 3 239 189 38 38 chr12 45156411 45156464 -98629991 - L2 LINE L2 -6 3307 3255 360 239 116 0 chr12 45156784 45156922 -98629533 + L1ME3A LINE L1 4549 4702 -1427 28 91 0 0 chr12 45156928 45157005 -98629450 + AT_rich Low_complexity Low_complexity 1 77 0 405 254 61 6 chr12 45157155 45157336 -98629119 + L1ME3A LINE L1 5005 5195 -934 343 165 158 101 chr12 45157336 45157494 -98628961 + L1MC5 LINE L1 7742 7908 -53 815 292 111 17 chr12 45157544 45157652 -98628803 + L1ME3A LINE L1 5241 5338 -815 7028 164 106 87 chr12 45157652 45159375 -98627080 - MER52A LTR ERV1 0 1755 1 815 292 111 17 chr12 45159375 45159844 -98626611 + L1ME3A LINE L1 5338 5872 -281 328 294 140 7 chr12 45160866 45161002 -98625453 + L2 LINE L2 3160 3313 0 199 267 22 0 chr12 45161031 45161076 -98625379 - MIR3 SINE MIR -46 162 117 1107 218 59 35 chr12 45161125 45161348 -98625107 - MLT2B1 LTR ERVL 0 520 304 180 0 0 0 chr12 45161348 45161368 -98625087 + (AGATG)n Simple_repeat Simple_repeat 1 20 0 1107 218 59 35 chr12 45161368 45161605 -98624850 - MLT2B1 LTR ERVL -216 304 1 434 183 88 36 chr12 45162020 45162157 -98624298 - L1MEd LINE L1 -5934 185 42 292 242 222 0 chr12 45162730 45162829 -98623626 + MIR3 SINE MIR 83 203 -5 3866 105 9 9 chr12 45162889 45163442 -98623013 - MER41A LTR ERV1 -1 553 1 10266 114 24 0 chr12 45163442 45164974 -98621481 - MER41A-int LTR ERV1 -2 5944 4377 26 30 0 0 chr12 45165888 45165921 -98620534 + AT_rich Low_complexity Low_complexity 1 33 0 432 296 90 14 chr12 45166659 45166882 -98619573 + L2 LINE L2 2733 2972 -342 600 289 72 14 chr12 45166889 45167097 -98619358 + L2 LINE L2 3094 3313 0 3819 195 19 12 chr12 45167664 45168465 -98617990 + L1MC1 LINE L1 5528 6333 0 352 204 31 10 chr12 45168465 45168563 -98617892 + L1M4 LINE L1 1792 1891 -4493 357 24 0 0 chr12 45168565 45168607 -98617848 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1414 204 108 8 chr12 45168611 45169059 -98617396 + L1M4 LINE L1 2033 2565 -3884 440 265 25 6 chr12 45169060 45169222 -98617233 + L1M4 LINE L1 5254 5418 -964 465 78 0 0 chr12 45169231 45169295 -98617160 + Alu SINE Alu 1 64 -246 782 181 31 57 chr12 45169553 45169780 -98616675 - L1MB3 LINE L1 -2 6181 5961 2824 183 44 20 chr12 45169911 45170704 -98615751 - L1MB3 LINE L1 -279 5904 5088 5736 39 7 0 chr12 45170704 45171393 -98615062 + L1PA5 LINE L1 5450 6143 -11 9200 148 16 4 chr12 45171409 45174123 -98612332 + L1MA2 LINE L1 3556 6304 0 3832 136 17 17 chr12 45174123 45174805 -98611650 + L1MA8 LINE L1 5594 6286 -5 29 28 0 0 chr12 45174807 45174843 -98611612 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr12 45174915 45174958 -98611497 + (TG)n Simple_repeat Simple_repeat 2 44 0 1423 238 63 58 chr12 45175388 45175786 -98610669 - MLT1E3 LTR MaLR 0 624 245 2440 77 7 0 chr12 45175786 45176085 -98610370 - AluSg SINE Alu -9 301 1 1423 238 63 58 chr12 45176085 45176330 -98610125 - MLT1E3 LTR MaLR -379 245 3 2239 106 3 3 chr12 45177526 45177837 -98608618 - AluSx SINE Alu -1 311 1 192 380 99 45 chr12 45177883 45178460 -98607995 + L2 LINE L2 1922 2529 -785 231 381 108 0 chr12 45178599 45178738 -98607717 + L2 LINE L2 3111 3264 -8 991 221 77 18 chr12 45180186 45180458 -98605997 - L1MA9 LINE L1 -24 6288 6001 26912 23 0 0 chr12 45180543 45184506 -98601949 + L1PA2 LINE L1 2193 6155 0 221 349 12 0 chr12 45184506 45184592 -98601863 + L3 LINE CR1 435 521 -1056 360 64 0 0 chr12 45184600 45184647 -98601808 + (ATG)n Simple_repeat Simple_repeat 2 48 0 361 270 147 38 chr12 45184708 45185050 -98601405 + MLT1J1 LTR MaLR 50 446 0 1986 188 27 98 chr12 45185081 45185634 -98600821 + MLT2B3 LTR ERVL 1 514 -40 2243 107 3 0 chr12 45185650 45185948 -98600507 - AluSq SINE Alu -14 299 1 373 82 0 0 chr12 45185963 45186012 -98600443 + Ricksha DNA DNA 855 903 -1143 331 278 65 9 chr12 45186016 45186124 -98600331 - MIR SINE MIR -25 237 124 1152 330 148 18 chr12 45186255 45187061 -98599394 + L3 LINE CR1 522 1468 -109 594 266 0 22 chr12 45188505 45188644 -98597811 - L2 LINE L2 0 3313 3178 775 297 114 62 chr12 45188781 45189694 -98596761 + L2 LINE L2 1701 2660 -654 313 350 54 90 chr12 45189806 45190252 -98596203 + L2 LINE L2 2842 3271 -1 894 251 9 9 chr12 45190423 45190646 -98595809 - MER58A DNA MER1_type 0 224 2 21 89 0 0 chr12 45191065 45191121 -98595334 + AT_rich Low_complexity Low_complexity 1 56 0 1739 197 0 3 chr12 45191484 45191789 -98594666 + AluSx SINE Alu 2 305 -7 2307 91 0 3 chr12 45191835 45192132 -98594323 + AluSx SINE Alu 1 296 -16 1642 163 72 85 chr12 45192203 45192676 -98593779 + MLT1C LTR MaLR 1 467 0 500 276 34 71 chr12 45192724 45193103 -98593352 + L2 LINE L2 2740 3106 -207 989 187 14 18 chr12 45193327 45193546 -98592909 + L1MC4a LINE L1 7008 7225 -583 2781 13 0 0 chr12 45193549 45193850 -98592605 + AluYa5 SINE Alu 1 301 -10 786 266 48 0 chr12 45193881 45194110 -98592345 + L1MD3 LINE L1 7746 7985 -10 26 0 0 0 chr12 45194110 45194136 -98592319 + AT_rich Low_complexity Low_complexity 1 26 0 389 119 2 0 chr12 45194293 45194357 -98592098 + L1MB3 LINE L1 4687 4751 -1395 4294 189 46 64 chr12 45194358 45194424 -98592031 + L1MB3 LINE L1 5054 5120 -1063 5736 42 0 0 chr12 45194424 45195112 -98591343 - L1PA5 LINE L1 -17 6137 5450 4294 189 46 64 chr12 45195112 45196177 -98590278 + L1MB3 LINE L1 5120 6182 -1 390 267 117 21 chr12 45196176 45196416 -98590039 + L1ME4a LINE L1 5611 5873 -248 * 2388 80 3 0 chr12 45196590 45196890 -98589565 - AluSg SINE Alu -9 301 1 257 300 147 63 chr12 45196972 45197185 -98589270 - MIR3 SINE MIR -3 259 33 2315 75 3 0 chr12 45197185 45197477 -98588978 - AluY SINE Alu -18 293 1 257 300 147 63 chr12 45197477 45197513 -98588942 - MIR3 SINE MIR -229 33 1 4242 189 19 20 chr12 45198545 45199681 -98586774 - L1 LINE L1 -3063 3785 2647 2243 107 23 41 chr12 45199686 45200079 -98586376 + L1MA4 LINE L1 5910 6295 -5 2270 82 9 0 chr12 45200328 45200645 -98585810 + L1PB2 LINE L1 5828 6147 -4 22 56 0 0 chr12 45201993 45202029 -98584426 + AT_rich Low_complexity Low_complexity 1 36 0 214 358 135 0 chr12 45202799 45202947 -98583508 + L2 LINE L2 2193 2360 -954 180 0 0 0 chr12 45203043 45203063 -98583392 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 319 217 12 36 chr12 45203144 45203227 -98583228 - MIR SINE MIR 0 262 182 231 271 53 28 chr12 45203476 45203548 -98582907 - MIR SINE MIR -64 144 49 411 271 146 0 chr12 45203813 45203957 -98582498 + MIR SINE MIR 69 233 -29 1684 190 7 0 chr12 45204050 45204340 -98582115 - AluJo SINE Alu -18 294 3 228 182 0 0 chr12 45204558 45204602 -98581853 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 23 33 0 0 chr12 45205007 45205037 -98581418 + AT_rich Low_complexity Low_complexity 1 30 0 666 257 26 0 chr12 45208279 45208431 -98578024 + MER5B DNA MER1_type 20 175 -3 712 256 106 7 chr12 45209668 45209969 -98576486 - MER114 LTR ERV -317 331 1 21 36 0 0 chr12 45210048 45210076 -98576379 + AT_rich Low_complexity Low_complexity 1 28 0 466 235 14 113 chr12 45211537 45211750 -98574705 + MIR SINE MIR 2 193 -69 485 133 31 25 chr12 45212016 45212375 -98574080 + (TA)n Simple_repeat Simple_repeat 1 361 0 30 45 0 0 chr12 45212375 45212419 -98574036 + AT_rich Low_complexity Low_complexity 1 44 0 506 130 35 19 chr12 45212419 45212677 -98573778 + (TA)n Simple_repeat Simple_repeat 1 262 0 6370 101 31 47 chr12 45212793 45213440 -98573015 - MER41A-int LTR ERV1 -1404 3961 3733 746 119 103 0 chr12 45213440 45213566 -98572889 + MER85 DNA T2_type 1 139 0 6370 101 31 47 chr12 45213566 45214609 -98571846 - MER41A-int LTR ERV1 -1632 3733 2675 3460 127 36 91 chr12 45214588 45215249 -98571206 - MER41A-int LTR ERV1 -5321 625 1 * 4073 86 16 0 chr12 45215335 45215880 -98570575 - MER41A LTR ERV1 0 554 1 2213 71 43 0 chr12 45216010 45216290 -98570165 - AluY SINE Alu -19 292 1 1008 253 154 49 chr12 45216540 45216740 -98569715 + L1MC4 LINE L1 7390 7568 -474 1866 141 44 0 chr12 45216740 45217010 -98569445 + AluSx SINE Alu 1 282 -30 907 8 43 0 chr12 45217014 45217131 -98569324 + (TAAAA)n Simple_repeat Simple_repeat 1 122 0 1008 253 154 49 chr12 45217131 45217514 -98568941 + L1MC4 LINE L1 7570 8040 -2 314 322 77 38 chr12 45217592 45217853 -98568602 - L2 LINE L2 -121 3192 2922 410 281 62 0 chr12 45219035 45219165 -98567290 - MIR SINE MIR -51 211 75 309 342 26 0 chr12 45219326 45219443 -98567012 - L1MC4 LINE L1 -1340 6702 6583 353 206 10 0 chr12 45219569 45219671 -98566784 + CT-rich Low_complexity Low_complexity 3 105 0 1720 33 19 0 chr12 45220244 45220456 -98565999 - L1PA4 LINE L1 -2 6153 5938 5283 22 0 0 chr12 45220456 45221111 -98565344 + L1PA4 LINE L1 5221 5875 -280 262 321 24 0 chr12 45221726 45221810 -98564645 - MIR SINE MIR -71 191 106 350 254 218 0 chr12 45221944 45222054 -98564401 - MIR SINE MIR -101 161 28 1639 205 80 52 chr12 45222255 45222778 -98563677 - LTR55 LTR ERV -10 538 1 2121 97 7 13 chr12 45222785 45223095 -98563360 + L1PA14 LINE L1 5840 6147 -14 23 0 0 0 chr12 45224117 45224140 -98562315 + AT_rich Low_complexity Low_complexity 1 23 0 219 211 0 0 chr12 45224653 45224691 -98561764 + polypurine Low_complexity Low_complexity 3 40 0 199 425 25 8 chr12 45224702 45224822 -98561633 + MIR3 SINE MIR 15 136 -72 2107 113 55 0 chr12 45225212 45225505 -98560950 + AluSc SINE Alu 1 309 0 225 154 0 0 chr12 45226868 45226907 -98559548 + A-rich Low_complexity Low_complexity 1 39 0 225 261 246 23 chr12 45227278 45227408 -98559047 + MER5A DNA MER1_type 16 174 -15 468 167 71 0 chr12 45229671 45229755 -98556700 + MER5A DNA MER1_type 1 90 -99 7429 171 40 35 chr12 45230238 45230889 -98555566 + L1MCa LINE L1 21 668 -5758 1743 155 9 29 chr12 45230889 45231205 -98555250 + AluJb SINE Alu 3 312 0 7429 171 40 35 chr12 45231205 45232111 -98554344 + L1MCa LINE L1 668 1585 -4841 1999 217 46 48 chr12 45232117 45232569 -98553886 + MER44D DNA MER2_type 9 516 -1971 1808 144 75 26 chr12 45232569 45232916 -98553539 - THE1B LTR MaLR 0 364 1 1999 217 46 48 chr12 45232916 45233006 -98553449 + MER44D DNA MER2_type 516 605 0 2002 152 74 22 chr12 45233009 45233438 -98553017 + L1MCa LINE L1 1706 2112 -4314 224 255 20 0 chr12 45235710 45235761 -98550694 + L2 LINE L2 3185 3236 -36 2651 105 5 27 chr12 45236209 45236579 -98549876 - THE1B LTR MaLR -2 362 1 488 222 11 0 chr12 45236579 45236669 -98549786 + Tigger7 DNA MER2_type 2401 2491 0 2603 156 70 35 chr12 45236672 45237246 -98549209 + L1MCa LINE L1 1588 2275 -4151 280 337 45 11 chr12 45237354 45237443 -98549012 + L2 LINE L2 3161 3252 -20 2416 131 8 32 chr12 45238136 45238509 -98547946 - THE1B LTR MaLR 0 364 1 379 256 83 8 chr12 45239025 45239146 -98547309 + MIR SINE MIR 123 252 -10 585 255 50 0 chr12 45242688 45242829 -98543626 - MER5A DNA MER1_type -40 149 2 476 279 37 47 chr12 45243786 45244001 -98542454 + Charlie2 DNA MER1_type 1 213 -2649 1182 239 145 18 chr12 45244079 45244401 -98542054 + Charlie2 DNA MER1_type 1876 2156 -706 1563 153 10 49 chr12 45244401 45244708 -98541747 + AluJb SINE Alu 1 295 -17 1182 239 145 18 chr12 45244708 45244888 -98541567 + Charlie2 DNA MER1_type 2156 2442 -420 8575 186 16 3 chr12 45245859 45248258 -98538197 - L1PA8 LINE L1 -9 6163 3742 1271 74 36 1 chr12 45248555 45248759 -98537696 - L1M4 LINE L1 -690 5494 5267 5401 39 5 0 chr12 45248759 45249354 -98537101 + L1PA4 LINE L1 5536 6149 -6 233 0 62 0 chr12 45249360 45249392 -98537063 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 977 86 0 0 chr12 45249403 45249531 -98536924 - L1MA2 LINE L1 -4 6300 6173 2762 152 13 3 chr12 45250012 45250820 -98535635 + L1M1 LINE L1 4868 5683 -621 30 45 0 0 chr12 45251786 45251830 -98534625 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr12 45254516 45254559 -98531896 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr12 45254610 45254650 -98531805 + AT_rich Low_complexity Low_complexity 1 40 0 2067 120 0 13 chr12 45255838 45256139 -98530316 + AluSx SINE Alu 1 297 -15 10724 27 4 1 chr12 45256962 45258561 -98527894 - L1P2 LINE L1 -425 5729 4125 343 88 0 152 chr12 45258562 45258687 -98527768 + L1P LINE L1 3642 3747 -2399 21 36 0 0 chr12 45259178 45259206 -98527249 + AT_rich Low_complexity Low_complexity 1 28 0 341 254 107 46 chr12 45259519 45259716 -98526739 + MIR SINE MIR 53 261 -1 651 197 66 3 chr12 45259939 45260110 -98526345 - MER33 DNA MER1_type -262 62 1 229 298 0 41 chr12 45260800 45260921 -98525534 - L1M LINE L1 -2438 5370 5255 2209 122 3 3 chr12 45261161 45261472 -98524983 + AluSx SINE Alu 1 311 -1 380 326 69 14 chr12 45263695 45263839 -98522616 - L2 LINE L2 0 3272 3121 543 98 0 147 chr12 45264234 45264336 -98522119 - AluSq SINE Alu -113 200 114 1074 98 0 0 chr12 45264377 45264510 -98521945 - AluSq SINE Alu -180 133 1 1551 178 20 7 chr12 45264701 45265005 -98521450 + L1MB3 LINE L1 5874 6181 -2 3441 199 27 31 chr12 45266377 45267763 -98518692 - L1MB7 LINE L1 -117 6067 4583 216 97 0 0 chr12 45268399 45268430 -98518025 + (TA)n Simple_repeat Simple_repeat 2 32 0 1182 109 0 0 chr12 45268941 45269155 -98517300 + (TA)n Simple_repeat Simple_repeat 1 214 0 3999 161 22 65 chr12 45269272 45270161 -98516294 - L1PA16 LINE L1 -1 6165 5315 215 414 100 0 chr12 45271067 45271207 -98515248 - L2 LINE L2 -8 3264 3111 2177 99 3 0 chr12 45271937 45272219 -98514236 - AluSp SINE Alu -30 283 1 415 246 77 100 chr12 45272729 45272989 -98513466 + MIR SINE MIR 1 254 -8 204 370 140 16 chr12 45274548 45274856 -98511599 + L2 LINE L2 2409 2754 -560 1774 158 3 3 chr12 45275648 45275932 -98510523 + MLT1B LTR MaLR 107 390 0 1672 126 3 86 chr12 45276235 45276536 -98509919 + AluSx SINE Alu 37 312 0 183 80 0 0 chr12 45276996 45277021 -98509434 + (A)n Simple_repeat Simple_repeat 1 25 0 4463 152 24 23 chr12 45277021 45277896 -98508559 + L1PA15-16 LINE L1 1930 2805 -4044 334 359 0 0 chr12 45278128 45278284 -98508171 + A-rich Low_complexity Low_complexity 1 156 0 954 228 102 36 chr12 45278863 45279108 -98507347 + MLT1E1 LTR MaLR 3 251 -373 2471 77 7 0 chr12 45279108 45279408 -98507047 + AluSg SINE Alu 1 302 -8 954 228 102 36 chr12 45279408 45279621 -98506834 + MLT1E1 LTR MaLR 251 449 -175 26 0 0 0 chr12 45280021 45280047 -98506408 + AT_rich Low_complexity Low_complexity 1 26 0 425 300 81 33 chr12 45280269 45280602 -98505853 + L1ME LINE L1 5329 5677 -444 2940 148 38 20 chr12 45280606 45281216 -98505239 - L1PA4 LINE L1 -7 6148 5528 2301 153 14 10 chr12 45282608 45283026 -98503429 - L1P4 LINE L1 -345 5821 5402 312 368 7 7 chr12 45283091 45283246 -98503209 + C-rich Low_complexity Low_complexity 2 156 0 323 226 9 38 chr12 45283322 45283428 -98503027 + CT-rich Low_complexity Low_complexity 3 105 0 1653 88 5 9 chr12 45283777 45283994 -98502461 - AluSc SINE Alu -93 216 1 2222 139 0 3 chr12 45284961 45285271 -98501184 + AluSx SINE Alu 1 309 -3 243 333 31 0 chr12 45285347 45285443 -98501012 + MIR SINE MIR 103 201 -61 2431 43 0 4 chr12 45336084 45336368 -98450087 + AluY SINE Alu 1 283 -28 190 94 0 0 chr12 45336368 45336400 -98450055 + (CAAA)n Simple_repeat Simple_repeat 2 148 0 23824 154 18 18 chr12 45337876 45343086 -98443369 - L1PA10 LINE L1 -10 6473 1229 201 74 0 0 chr12 45343086 45343113 -98443342 + (TTG)n Simple_repeat Simple_repeat 1 27 0 23824 154 18 18 chr12 45343113 45344334 -98442121 - L1PA10 LINE L1 -5254 1229 10 1004 108 38 0 chr12 45344467 45344624 -98441831 - MER50 LTR ERV1 -472 262 100 1859 99 166 84 chr12 45344642 45345046 -98441409 + LTR23 LTR ERV1 1 437 0 3992 158 30 6 chr12 45345424 45346132 -98440323 + MER50 LTR ERV1 1 725 -9 568 277 71 49 chr12 45346214 45346481 -98439974 - L1MEd LINE L1 -5829 290 18 2198 72 0 0 chr12 45346623 45346886 -98439569 + AluY SINE Alu 37 299 -12 1856 185 3 7 chr12 45347832 45348140 -98438315 - AluJo SINE Alu -5 307 1 364 266 32 0 chr12 45348526 45348620 -98437835 + MIR SINE MIR 106 202 -60 186 71 0 0 chr12 45348786 45348814 -98437641 + (A)n Simple_repeat Simple_repeat 1 28 0 2027 124 0 13 chr12 45349570 45349884 -98436571 + AluSx SINE Alu 1 310 -2 1404 234 41 8 chr12 45349884 45350247 -98436208 - MER44D DNA MER2_type -174 431 2 195 285 105 64 chr12 45350255 45350427 -98436028 - L2 LINE L2 -1244 2070 1892 339 270 126 28 chr12 45352083 45352298 -98434157 - MARNA DNA Mariner -144 442 207 633 198 0 8 chr12 45352423 45352544 -98433911 - L2 LINE L2 -1 3312 3193 261 0 0 0 chr12 45352547 45352576 -98433879 + (TA)n Simple_repeat Simple_repeat 1 29 0 40513 38 22 2 chr12 45352578 45358601 -98427854 - L1PA3 LINE L1 -5 6150 1 2081 140 0 0 chr12 45358603 45358896 -98427559 - AluSx SINE Alu -13 299 7 202 61 61 0 chr12 45359548 45359581 -98426874 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2322 84 7 0 chr12 45359924 45360220 -98426235 - AluSp SINE Alu -15 298 1 22 70 0 0 chr12 45360623 45360666 -98425789 + AT_rich Low_complexity Low_complexity 1 43 0 900 177 6 12 chr12 45360687 45360851 -98425604 - FRAM SINE Alu -3 163 1 222 338 120 14 chr12 45362155 45362439 -98424016 - L3 LINE CR1 -715 862 549 1637 200 89 10 chr12 45363013 45363509 -98422946 + L1MCa LINE L1 1711 2245 -4181 268 328 15 0 chr12 45363662 45363729 -98422726 + L2 LINE L2 3185 3252 -20 2242 131 8 32 chr12 45364424 45364797 -98421658 - THE1B LTR MaLR 0 364 1 385 256 83 8 chr12 45365315 45365436 -98421019 + MIR SINE MIR 123 252 -10 588 255 50 0 chr12 45368978 45369119 -98417336 - MER5A DNA MER1_type -40 149 2 182 79 0 79 chr12 45369872 45369910 -98416545 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 662 278 72 14 chr12 45370565 45370774 -98415681 + MIR SINE MIR 41 261 -1 25 0 0 0 chr12 45371606 45371631 -98414824 + AT_rich Low_complexity Low_complexity 1 25 0 2169 74 3 52 chr12 45372204 45372513 -98413942 + AluY SINE Alu 1 294 -17 40 0 0 0 chr12 45372727 45372767 -98413688 + AT_rich Low_complexity Low_complexity 1 40 0 1096 266 83 18 chr12 45373543 45373927 -98412528 - MLT1I LTR MaLR 0 409 1 3057 111 7 9 chr12 45375305 45375763 -98410692 - L1PA16 LINE L1 0 6166 5710 1520 234 76 99 chr12 45376541 45376688 -98409767 + MLT1F1 LTR MaLR 1 150 -417 1732 181 20 3 chr12 45376688 45376987 -98409468 - AluJb SINE Alu -8 304 1 1520 234 76 99 chr12 45376987 45377394 -98409061 + MLT1F1 LTR MaLR 150 567 0 1895 127 7 7 chr12 45378803 45379086 -98407369 + AluSc SINE Alu 1 283 -26 2101 119 4 0 chr12 45379391 45379701 -98406754 - AluSc SINE Alu 0 311 1 2291 96 0 7 chr12 45381330 45381633 -98404822 - AluSc SINE Alu -4 305 5 21 0 0 0 chr12 45382158 45382179 -98404276 + AT_rich Low_complexity Low_complexity 1 21 0 475 232 10 0 chr12 45382240 45382339 -98404116 - L2 LINE L2 0 3313 3214 526 195 24 8 chr12 45383060 45383183 -98403272 - MER94 DNA DNA 0 134 10 2358 88 0 7 chr12 45383691 45383987 -98402468 + AluSq SINE Alu 1 294 -19 2251 119 18 6 chr12 45384441 45384778 -98401677 + THE1B LTR MaLR 24 364 0 2286 109 3 3 chr12 45385505 45385817 -98400638 - AluSx SINE Alu 0 312 1 243 333 27 0 chr12 45385900 45386011 -98400444 - MLT1K LTR MaLR -109 479 366 191 69 86 17 chr12 45386240 45386298 -98400157 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 1629 159 37 9 chr12 45386301 45386627 -98399828 + LTR35 LTR ERV1 284 618 0 292 377 66 0 chr12 45386665 45386787 -98399668 + L2 LINE L2 3139 3268 -4 309 319 98 48 chr12 45387111 45387568 -98398887 + L2 LINE L2 1179 1658 -1656 30 27 0 0 chr12 45388624 45388661 -98397794 + AT_rich Low_complexity Low_complexity 1 37 0 309 342 32 25 chr12 45389323 45389481 -98396974 - MER117 DNA MER1_type -34 163 5 552 172 8 25 chr12 45389638 45389760 -98396695 - L1PB4 LINE L1 0 6156 6037 246 218 23 23 chr12 45390693 45390780 -98395675 + L1ME LINE L1 5347 5433 -688 1946 166 5 29 chr12 45391059 45391433 -98395022 - MLT1B LTR MaLR -19 371 7 910 262 73 34 chr12 45391473 45392055 -98394400 + L1MEc LINE L1 895 1556 -4754 319 290 50 10 chr12 45392072 45392172 -98394283 + L1ME4a LINE L1 5985 6088 -33 393 22 0 0 chr12 45394003 45394049 -98392406 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2065 122 0 0 chr12 45394049 45394328 -98392127 - AluSx SINE Alu -33 279 1 251 262 168 7 chr12 45394432 45394581 -98391874 + MER112 DNA MER1_type 26 198 -62 273 205 418 16 chr12 45394598 45394720 -98391735 + MIR SINE MIR 75 245 -17 420 20 0 0 chr12 45394817 45394866 -98391589 + (CA)n Simple_repeat Simple_repeat 1 49 0 19825 92 11 4 chr12 45394979 45397809 -98388646 + HERVK22 LTR ERVK 2665 6837 0 1736 229 21 43 chr12 45397809 45398277 -98388178 + LTR22A LTR ERVK 1 458 0 383 319 217 6 chr12 45398280 45398593 -98387862 - L3 LINE CR1 -516 1061 683 246 330 0 22 chr12 45398857 45398948 -98387507 - MIR SINE MIR -52 210 122 265 253 11 58 chr12 45398971 45399058 -98387397 + MIR SINE MIR 31 113 -149 294 365 0 9 chr12 45399649 45399756 -98386699 - MIR3 SINE MIR -45 163 58 37 23 0 0 chr12 45400020 45400064 -98386391 + AT_rich Low_complexity Low_complexity 1 44 0 351 333 34 10 chr12 45400513 45400720 -98385735 + L1MEd LINE L1 692 903 -5302 2590 251 52 7 chr12 45400755 45401501 -98384954 - L1MEc LINE L1 -5421 975 196 266 263 129 32 chr12 45401510 45401696 -98384759 + L1MEd LINE L1 1435 1638 -4758 367 343 41 73 chr12 45401697 45402134 -98384321 + L1ME LINE L1 231 653 -5552 516 198 9 9 chr12 45402684 45402800 -98383655 + L1MA10 LINE L1 6211 6326 -8 495 296 104 19 chr12 45402820 45403090 -98383365 + L1ME LINE L1 1924 2216 -4180 4880 21 9 0 chr12 45403093 45403668 -98382787 + L1PA3 LINE L1 5529 6108 -47 30 0 0 0 chr12 45404017 45404047 -98382408 + AT_rich Low_complexity Low_complexity 1 30 0 901 266 89 60 chr12 45404333 45405539 -98380916 + L1ME LINE L1 2161 3369 -2846 333 296 34 34 chr12 45405565 45405771 -98380684 + L1ME LINE L1 3461 3666 -2549 21 0 0 0 chr12 45407011 45407032 -98379423 + AT_rich Low_complexity Low_complexity 1 21 0 2091 215 53 34 chr12 45407038 45407564 -98378891 + MLT1F LTR MaLR 1 536 -6 243 157 0 0 chr12 45410109 45410160 -98376295 + GA-rich Low_complexity Low_complexity 2 52 0 291 294 105 20 chr12 45410487 45410640 -98375815 - L2 LINE L2 0 3313 3148 517 305 7 14 chr12 45410812 45410953 -98375502 - MIR3 SINE MIR -61 147 8 1008 131 24 24 chr12 45411606 45411774 -98374681 + FRAM SINE Alu 1 167 -9 1992 88 46 0 chr12 45411817 45412080 -98374375 - AluY SINE Alu -36 275 1 3755 153 36 24 chr12 45412447 45413193 -98373262 + L1MB1 LINE L1 5413 6167 -1 209 218 26 51 chr12 45414462 45414540 -98371915 + MIR3 SINE MIR 133 208 0 722 287 63 5 chr12 45414717 45414940 -98371515 + MIR SINE MIR 9 244 -18 1215 177 0 35 chr12 45414981 45415213 -98371242 - AluJo SINE Alu -88 224 1 277 261 70 9 chr12 45415930 45416045 -98370410 + L1ME4a LINE L1 5989 6110 -11 24 0 0 0 chr12 45416460 45416484 -98369971 + AT_rich Low_complexity Low_complexity 1 24 0 273 188 35 12 chr12 45416546 45416631 -98369824 + CT-rich Low_complexity Low_complexity 2 88 0 486 195 80 18 chr12 45417771 45417884 -98368571 + L2 LINE L2 3149 3268 -4 1983 161 5 21 chr12 45418857 45419243 -98367212 - L1MA6 LINE L1 -4 6296 5917 940 321 68 24 chr12 45419358 45419741 -98366714 - L3 LINE CR1 -11 1566 1167 1888 215 19 45 chr12 45419846 45420316 -98366139 + LTR22A LTR ERVK 1 458 0 5300 121 8 11 chr12 45420316 45421113 -98365342 + HERVK22 LTR ERVK 1 794 -6043 1674 228 31 22 chr12 45421096 45421639 -98364816 + HERVK22 LTR ERVK 2314 2861 -3976 * 589 234 117 24 chr12 45421794 45421906 -98364549 + Charlie2 DNA MER1_type 2123 2223 -639 1563 153 10 49 chr12 45421906 45422213 -98364242 + AluJb SINE Alu 1 295 -17 589 234 117 24 chr12 45422213 45422390 -98364065 + Charlie2 DNA MER1_type 2223 2439 -423 369 248 104 8 chr12 45422399 45422524 -98363931 - L1ME3A LINE L1 -5 6165 6029 992 245 111 15 chr12 45422528 45423147 -98363308 - L1ME3A LINE L1 -521 5641 4967 910 216 25 4 chr12 45423159 45423395 -98363060 + L1MEc LINE L1 2194 2434 -3962 502 252 12 79 chr12 45423728 45423894 -98362561 + MIR SINE MIR 1 154 -60 235 333 176 9 chr12 45424480 45424588 -98361867 + MIR SINE MIR 12 137 -125 236 213 75 32 chr12 45424629 45424723 -98361732 - MLT1K LTR MaLR -32 556 459 4573 92 17 64 chr12 45425414 45426163 -98360292 + HUERS-P3b LTR ERV1 3028 3741 -3677 264 231 0 0 chr12 45426163 45426215 -98360240 + LTR30 LTR ERV1 1 52 -670 1490 141 18 49 chr12 45426215 45426558 -98359897 + LTR12 LTR ERV1 55 2032 -406 340 233 11 0 chr12 45426558 45426648 -98359807 + LTR30 LTR ERV1 552 642 -80 749 100 0 0 chr12 45426651 45426751 -98359704 + LTR12 LTR ERV1 615 714 0 * 2136 108 54 6 chr12 45426751 45427060 -98359395 + HUERS-P1 LTR ERV1 2592 2915 -3348 1615 134 4 0 chr12 45427060 45427314 -98359141 + L1MB1 LINE L1 5912 6166 -2 355 367 55 37 chr12 45427341 45427668 -98358787 - L2 LINE L2 -122 3150 2818 1839 183 0 0 chr12 45428322 45428628 -98357827 - AluJb SINE Alu -4 308 3 389 288 96 79 chr12 45429474 45429629 -98356826 - MIR SINE MIR -10 252 90 1771 145 60 0 chr12 45429629 45429911 -98356544 + AluSc SINE Alu 1 299 -10 389 288 96 79 chr12 45429911 45429984 -98356471 - MIR SINE MIR -172 90 20 1037 101 13 0 chr12 45430172 45430321 -98356134 - L1PB1 LINE L1 -2 6149 5999 367 270 61 14 chr12 45430731 45430879 -98355576 - L1ME4a LINE L1 -8 6113 5959 244 149 35 161 chr12 45431140 45431227 -98355228 - L1MCa LINE L1 -4761 1665 1590 483 222 11 0 chr12 45431232 45431322 -98355133 - Tigger7 DNA MER2_type 0 2587 2497 2465 105 5 27 chr12 45431322 45431692 -98354763 + THE1B LTR MaLR 1 362 -2 242 343 15 0 chr12 45432124 45432191 -98354264 - L2 LINE L2 -20 3252 3185 1261 149 37 9 chr12 45434357 45434572 -98351883 + AluJb SINE Alu 87 307 -5 3085 145 79 8 chr12 45435656 45436276 -98350179 + L1MCa LINE L1 1718 2381 -4045 793 191 33 49 chr12 45437676 45437859 -98348596 + AluJb SINE Alu 107 286 -26 319 353 53 32 chr12 45437913 45437962 -98348493 - L2 LINE L2 -556 2758 2712 1663 126 0 48 chr12 45437962 45438231 -98348224 - AluJb SINE Alu -19 293 38 319 353 53 32 chr12 45438231 45438371 -98348084 - L2 LINE L2 -602 2712 2565 219 125 0 0 chr12 45438396 45438436 -98348019 + (TC)n Simple_repeat Simple_repeat 1 40 0 439 212 199 33 chr12 45438451 45438602 -98347853 - MIR SINE MIR 0 262 87 421 32 32 16 chr12 45438645 45438708 -98347747 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 386 378 7 7 chr12 45438770 45438913 -98347542 + L3 LINE CR1 1434 1576 -1 392 294 153 4 chr12 45440105 45440380 -98346075 + Charlie2 DNA MER1_type 1 316 -2546 229 291 38 19 chr12 45440443 45440601 -98345854 + Charlie2 DNA MER1_type 1923 2083 -779 431 233 35 0 chr12 45441024 45441140 -98345315 - MLT1H1 LTR MaLR -17 538 419 225 349 0 0 chr12 45441628 45441671 -98344784 + C-rich Low_complexity Low_complexity 1 43 0 407 250 11 28 chr12 45441671 45441851 -98344604 + CT-rich Low_complexity Low_complexity 1 177 0 188 312 11 0 chr12 45441830 45441923 -98344532 + C-rich Low_complexity Low_complexity 5 98 0 * 2270 109 3 3 chr12 45442300 45442611 -98343844 + AluSx SINE Alu 1 311 -1 559 274 82 34 chr12 45442652 45442944 -98343511 + L1ME LINE L1 5502 5807 -314 251 275 29 0 chr12 45443021 45443090 -98343365 + T-rich Low_complexity Low_complexity 5 75 0 2361 99 0 0 chr12 45443179 45443473 -98342982 - AluSg SINE Alu -16 294 1 201 232 224 16 chr12 45444021 45444114 -98342341 - MIR SINE MIR -92 116 8 190 311 40 0 chr12 45444145 45444219 -98342236 + MIR SINE MIR 179 255 -7 58 0 0 0 chr12 45445501 45445559 -98340896 + AT_rich Low_complexity Low_complexity 1 58 0 260 207 17 0 chr12 45445738 45445796 -98340659 - L2 LINE L2 -936 2378 2320 402 115 0 0 chr12 45445840 45445901 -98340554 + (TG)n Simple_repeat Simple_repeat 1 61 0 1755 149 3 26 chr12 45445999 45446301 -98340154 + AluSx SINE Alu 1 295 -17 2216 106 0 13 chr12 45446303 45446604 -98339851 + AluSc SINE Alu 3 299 -10 206 371 22 0 chr12 45447506 45447595 -98338860 - L2 LINE L2 -214 3058 2968 284 359 43 0 chr12 45447627 45447744 -98338711 + L2 LINE L2 3138 3259 -13 1370 138 12 21 chr12 45447761 45448001 -98338454 + MLT2A2 LTR ERVL 1 238 -215 3203 116 2 10 chr12 45448420 45448922 -98337533 + L1PA13 LINE L1 5662 6159 -4 2754 111 32 9 chr12 45449083 45449525 -98336930 + L1PA12 LINE L1 5717 6168 0 392 264 77 76 chr12 45449696 45450186 -98336269 + MLT1H1 LTR MaLR 3 555 0 1332 268 103 32 chr12 45450549 45451250 -98335205 + L2 LINE L2 2554 3305 -8 3105 187 11 4 chr12 45451299 45451856 -98334599 + MER68 LTR ERV1 1 561 -1 214 262 167 48 chr12 45451908 45451992 -98334463 - L2 LINE L2 -671 2643 2550 2407 77 20 0 chr12 45452248 45452546 -98333909 + AluY SINE Alu 1 304 -7 557 235 0 9 chr12 45452616 45452731 -98333724 + L2 LINE L2 3193 3306 -7 2391 88 3 0 chr12 45453084 45453391 -98333064 + AluSg SINE Alu 1 308 -2 21 36 0 0 chr12 45453663 45453691 -98332764 + AT_rich Low_complexity Low_complexity 1 28 0 656 234 86 23 chr12 45453799 45454104 -98332351 + LTR16A LTR ERVL 19 438 -12 1981 140 18 38 chr12 45454317 45454531 -98331924 + MER1B DNA MER1_type 3 209 -2501 2359 103 0 0 chr12 45454531 45454831 -98331624 + AluSq SINE Alu 1 300 -13 1981 140 18 38 chr12 45454831 45454958 -98331497 + MER1B DNA MER1_type 209 337 0 374 206 191 28 chr12 45454967 45455066 -98331389 + MIR SINE MIR 88 218 -44 2535 65 0 7 chr12 45455066 45455376 -98331079 + AluY SINE Alu 1 308 -3 374 206 191 28 chr12 45455376 45455417 -98331038 + MIR SINE MIR 218 251 -11 526 302 95 29 chr12 45455617 45455859 -98330596 - MIR SINE MIR 0 262 5 1895 154 0 3 chr12 45456766 45457064 -98329391 + AluSx SINE Alu 1 297 -15 1449 108 23 0 chr12 45457075 45457289 -98329166 + L1PA12 LINE L1 5950 6168 0 532 300 179 14 chr12 45457307 45457737 -98328718 + L2 LINE L2 1698 2198 -1116 328 338 15 29 chr12 45457992 45458128 -98328327 + L2 LINE L2 2951 3084 -188 233 285 154 0 chr12 45458294 45458424 -98328031 + L1ME4a LINE L1 5942 6091 -30 204 125 0 0 chr12 45458484 45458516 -98327939 + (A)n Simple_repeat Simple_repeat 1 32 0 2643 106 53 25 chr12 45458814 45459248 -98327207 - MER83 LTR ERV1 0 448 3 22 35 0 0 chr12 45459558 45459587 -98326868 + AT_rich Low_complexity Low_complexity 1 29 0 1977 160 10 0 chr12 45459753 45460060 -98326395 - AluJb SINE Alu -2 310 1 186 71 0 0 chr12 45460125 45460153 -98326302 + (T)n Simple_repeat Simple_repeat 1 28 0 2048 105 0 0 chr12 45461433 45461700 -98324755 - AluSq SINE Alu -7 306 40 534 176 22 131 chr12 45461730 45461821 -98324634 - Charlie5 DNA MER1_type -1 2584 2485 2125 74 78 0 chr12 45461821 45462104 -98324351 - AluY SINE Alu -6 305 1 2312 98 3 3 chr12 45462104 45462409 -98324046 - AluSp SINE Alu -6 307 3 534 176 22 131 chr12 45462409 45462538 -98323917 - Charlie5 DNA MER1_type -98 2487 2387 208 287 58 58 chr12 45463731 45463818 -98322637 - MIR SINE MIR -70 192 106 425 298 140 34 chr12 45465936 45465983 -98320472 - L1MC4a LINE L1 -188 5933 5892 354 23 0 0 chr12 45465983 45466026 -98320429 + (TG)n Simple_repeat Simple_repeat 2 44 0 425 298 140 34 chr12 45466026 45466266 -98320189 - L1MC4a LINE L1 -229 5892 5653 2242 107 0 3 chr12 45466266 45466565 -98319890 - AluSx SINE Alu -14 298 1 425 298 140 34 chr12 45466565 45466656 -98319799 - L1MC4a LINE L1 -468 5653 5573 355 280 58 37 chr12 45466673 45466916 -98319539 + L1ME LINE L1 5571 5818 -303 278 232 54 0 chr12 45467136 45467192 -98319263 - L2 LINE L2 -3 3269 3211 23 0 0 0 chr12 45468487 45468510 -98317945 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr12 45468664 45468695 -98317760 + (CA)n Simple_repeat Simple_repeat 1 31 0 2188 108 0 32 chr12 45469303 45469617 -98316838 - AluSq SINE Alu -9 304 1 182 91 30 0 chr12 45470182 45470215 -98316240 + A-rich Low_complexity Low_complexity 2 35 0 997 194 0 40 chr12 45471757 45471958 -98314497 + AluJo SINE Alu 44 236 -76 5256 81 7 77 chr12 45472350 45472514 -98313941 + L1PA11 LINE L1 5325 5499 -675 2362 97 0 3 chr12 45472514 45472822 -98313633 + AluSx SINE Alu 3 309 -3 2203 111 0 0 chr12 45472831 45473129 -98313326 + AluSq SINE Alu 1 298 -15 5256 81 7 77 chr12 45473129 45473357 -98313098 + L1PA11 LINE L1 5507 5749 -425 2294 93 7 0 chr12 45473357 45473658 -98312797 + AluSx SINE Alu 1 303 -9 5256 81 7 77 chr12 45473658 45474168 -98312287 + L1PA11 LINE L1 5749 6173 -1 280 229 0 16 chr12 45474522 45474583 -98311872 + MIR SINE MIR 189 248 -14 1573 248 79 88 chr12 45474676 45475357 -98311098 - L1ME LINE L1 -2609 4348 3662 1879 117 7 40 chr12 45475357 45475657 -98310798 - AluSx SINE Alu -22 290 1 1573 248 79 88 chr12 45475657 45475794 -98310661 - L1ME LINE L1 -3295 3662 3525 183 42 0 0 chr12 45475794 45475818 -98310637 + (TG)n Simple_repeat Simple_repeat 2 25 0 1573 248 79 88 chr12 45475818 45476803 -98309652 - L1ME LINE L1 -3432 3525 2606 2285 90 7 3 chr12 45476803 45477102 -98309353 - AluSp SINE Alu -8 305 6 1573 248 79 88 chr12 45477102 45477318 -98309137 - L1ME LINE L1 -4351 2606 2389 1383 190 0 16 chr12 45477318 45477576 -98308879 - AluJb SINE Alu -9 303 50 700 250 56 4 chr12 45477576 45477808 -98308647 - L1ME LINE L1 -4741 2397 2154 414 277 43 3 chr12 45477811 45478010 -98308445 - L1ME LINE L1 -5357 1502 1344 23 33 0 0 chr12 45478031 45478061 -98308394 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 45478105 45478126 -98308329 + AT_rich Low_complexity Low_complexity 1 21 0 2259 132 0 0 chr12 45478191 45478501 -98307954 - AluSx SINE Alu -2 310 1 4839 104 90 43 chr12 45478725 45480207 -98306248 - pTR5 LTR ERV1 -3 2435 732 514 350 5 5 chr12 45480216 45480416 -98306039 - L1ME LINE L1 -5611 1336 1137 216 320 160 8 chr12 45480463 45480588 -98305867 + L2 LINE L2 2688 2831 -483 237 33 0 0 chr12 45480629 45480659 -98305796 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1395 106 219 4 chr12 45480669 45480906 -98305549 - AluSq SINE Alu -25 288 1 815 120 8 23 chr12 45480926 45481059 -98305396 - AluSg/x SINE Alu -6 304 174 497 254 66 47 chr12 45481100 45481313 -98305142 + L2 LINE L2 2936 3152 -161 770 271 90 49 chr12 45481381 45481464 -98304991 - MLT1I LTR MaLR -5 404 326 1998 117 39 0 chr12 45481464 45481746 -98304709 + AluY SINE Alu 3 295 -16 770 271 90 49 chr12 45481746 45482050 -98304405 - MLT1I LTR MaLR -83 326 1 362 257 26 92 chr12 45482051 45482203 -98304252 + L2 LINE L2 3172 3313 0 999 272 130 17 chr12 45483172 45483580 -98302875 + L2 LINE L2 2808 3261 -52 1372 71 0 6 chr12 45483711 45483893 -98302562 + L1PA7 LINE L1 5972 6152 -2 233 351 62 13 chr12 45484464 45484689 -98301766 + L2 LINE L2 2742 2977 -337 268 320 19 29 chr12 45485642 45485745 -98300710 + MIR SINE MIR 33 134 -74 1019 211 101 15 chr12 45487107 45487434 -98299021 + L1ME2 LINE L1 5690 6044 -120 1021 76 0 0 chr12 45488533 45488664 -98297791 + AluSp/q SINE Alu 176 306 -7 743 220 173 47 chr12 45488683 45488983 -98297472 + MER46C DNA MER2_type 1 338 0 2178 88 25 0 chr12 45488983 45489268 -98297187 + AluSx SINE Alu 1 292 -20 1060 118 39 0 chr12 45489115 45489269 -98297186 + AluSc SINE Alu 131 312 0 199 0 0 0 chr12 45489269 45489291 -98297164 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2099 130 0 3 chr12 45490345 45490638 -98295817 + AluSc SINE Alu 1 292 -17 391 328 45 8 chr12 45490680 45490814 -98295641 - L2 LINE L2 0 3272 3134 2221 101 3 10 chr12 45491305 45491467 -98294988 - AluSc SINE Alu -15 294 133 2381 77 0 0 chr12 45491467 45491766 -98294689 - AluY SINE Alu -12 299 1 2221 101 3 10 chr12 45491766 45491899 -98294556 - AluSc SINE Alu -176 133 1 294 29 0 0 chr12 45493020 45493055 -98293400 + (CAT)n Simple_repeat Simple_repeat 1 35 0 349 346 55 37 chr12 45493257 45493569 -98292886 - L2 LINE L2 -182 3090 2765 616 163 0 0 chr12 45493579 45493671 -98292784 + LTR47A LTR ERVL 3 94 -358 1104 163 74 5 chr12 45493696 45493899 -98292556 + LTR47A LTR ERVL 236 452 0 4319 65 17 41 chr12 45495031 45496098 -98290357 + MER11A LTR ERVK 1 1266 0 248 292 104 54 chr12 45496278 45496518 -98289937 + L2 LINE L2 1178 1429 -1885 414 288 197 5 chr12 45497193 45497391 -98289064 + L2 LINE L2 3074 3309 -4 2964 82 3 0 chr12 45498000 45498368 -98288087 + L1PA6 LINE L1 5781 6149 -5 23 33 0 0 chr12 45498368 45498398 -98288057 + AT_rich Low_complexity Low_complexity 1 30 0 2259 121 0 0 chr12 45498432 45498737 -98287718 - AluSx SINE Alu -7 305 1 1493 169 35 12 chr12 45499608 45499862 -98286593 - AluJb SINE Alu -52 260 1 478 236 101 63 chr12 45500781 45501004 -98285451 - MIR SINE MIR -34 228 10 249 108 0 0 chr12 45501157 45501194 -98285261 + (TG)n Simple_repeat Simple_repeat 2 38 0 208 275 156 28 chr12 45501256 45501365 -98285090 - MIR SINE MIR -63 145 23 353 243 74 62 chr12 45502067 45502210 -98284245 - MIR SINE MIR -45 163 26 326 346 108 0 chr12 45502457 45502634 -98283821 - MIR SINE MIR -58 204 9 338 325 159 0 chr12 45503181 45503307 -98283148 + L2 LINE L2 3121 3266 -6 604 306 50 9 chr12 45503524 45503746 -98282709 - MIR SINE MIR -8 254 24 897 295 130 28 chr12 45504111 45504859 -98281596 - L2 LINE L2 0 3313 2482 324 341 148 9 chr12 45504976 45505193 -98281262 - MIR SINE MIR -5 257 11 197 135 27 0 chr12 45505269 45505306 -98281149 + L2 LINE L2 3276 3313 0 200 182 0 0 chr12 45505634 45505667 -98280788 + (CA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 45506182 45506203 -98280252 + AT_rich Low_complexity Low_complexity 1 21 0 2048 125 0 10 chr12 45506270 45506583 -98279872 + AluSg SINE Alu 1 310 0 201 121 0 0 chr12 45507101 45507134 -98279321 + (CA)n Simple_repeat Simple_repeat 1 33 0 300 281 77 82 chr12 45507823 45508200 -98278255 + L1M2 LINE L1 777 1151 -5698 354 262 0 0 chr12 45508417 45508539 -98277916 + (CA)n Simple_repeat Simple_repeat 1 122 0 325 325 50 0 chr12 45509461 45509541 -98276914 + L2 LINE L2 3141 3224 -48 1974 159 0 0 chr12 45509815 45510105 -98276350 - AluJb SINE Alu -22 290 1 1724 157 20 10 chr12 45510107 45510401 -98276054 - AluJo SINE Alu -13 299 3 421 263 166 55 chr12 45510998 45511215 -98275240 - MIR SINE MIR -9 253 13 197 372 47 0 chr12 45511530 45511616 -98274839 + MIR SINE MIR 159 248 -14 2216 115 0 3 chr12 45512073 45512369 -98274086 + AluSg SINE Alu 1 295 -15 237 328 0 0 chr12 45512976 45513043 -98273412 + MIR SINE MIR 57 123 -139 2405 78 0 13 chr12 45513282 45513589 -98272866 - AluSg SINE Alu -7 303 1 2376 84 0 0 chr12 45513809 45514108 -98272347 - AluSg SINE Alu -11 299 1 791 181 0 36 chr12 45514830 45514968 -98271487 + FLAM_A SINE Alu 1 133 0 201 344 0 0 chr12 45515021 45515085 -98271370 + GA-rich Low_complexity Low_complexity 2 65 0 1740 201 80 49 chr12 45515752 45516205 -98270250 - MLT1C LTR MaLR 0 467 1 503 271 100 17 chr12 45516537 45516777 -98269678 - L2 LINE L2 -38 3275 3016 248 296 0 25 chr12 45517020 45517101 -98269354 - L2 LINE L2 -34 3279 3201 412 339 35 11 chr12 45517125 45517299 -98269156 + MIR3 SINE MIR 25 202 -6 361 133 17 0 chr12 45517587 45517647 -98268808 + MIR SINE MIR 189 249 -13 213 315 116 7 chr12 45517887 45518033 -98268422 - L2 LINE L2 -932 2382 2221 502 274 78 34 chr12 45518044 45518223 -98268232 + MER5A DNA MER1_type 1 187 -2 33 43 0 0 chr12 45518270 45518317 -98268138 + AT_rich Low_complexity Low_complexity 1 47 0 443 284 35 35 chr12 45518694 45518863 -98267592 + Charlie8 DNA MER1_type 39 207 -2210 2078 80 31 28 chr12 45518952 45519262 -98267193 - AluY SINE Alu 0 311 1 209 233 0 0 chr12 45519831 45519874 -98266581 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 2118 106 30 13 chr12 45520113 45520416 -98266039 + AluSc SINE Alu 1 308 -1 494 244 124 34 chr12 45520527 45520736 -98265719 + MIR SINE MIR 4 231 -31 914 174 0 30 chr12 45521000 45521167 -98265288 - AluJb SINE Alu -16 296 135 21 36 0 0 chr12 45521418 45521446 -98265009 + AT_rich Low_complexity Low_complexity 1 28 0 285 309 36 55 chr12 45522150 45522260 -98264195 + MIR SINE MIR 18 125 -83 1782 159 0 0 chr12 45522335 45522593 -98263862 + AluJb SINE Alu 1 258 -54 2383 59 20 10 chr12 45522792 45523097 -98263358 - AluY SINE Alu -3 308 1 255 170 0 0 chr12 45523704 45523751 -98262704 + CT-rich Low_complexity Low_complexity 4 50 0 2214 88 7 10 chr12 45523760 45524057 -98262398 - AluSc SINE Alu -13 296 1 2380 81 0 16 chr12 45524807 45525116 -98261339 + AluSc SINE Alu 1 304 -5 516 228 91 82 chr12 45528308 45528505 -98257950 - MIR SINE MIR -1 261 60 2472 82 0 0 chr12 45528505 45528810 -98257645 + AluSq SINE Alu 1 305 -8 516 228 91 82 chr12 45528810 45528844 -98257611 - MIR SINE MIR -202 60 28 187 143 29 0 chr12 45528916 45528951 -98257504 + L2 LINE L2 3237 3272 0 206 204 45 0 chr12 45529654 45529698 -98256757 + GA-rich Low_complexity Low_complexity 3 48 0 1837 108 100 4 chr12 45530022 45530291 -98256164 + AluSg SINE Alu 1 295 -15 321 211 20 116 chr12 45530464 45530611 -98255844 - MER113 DNA MER1_type? -5 516 384 * 680 237 31 70 chr12 45530605 45530844 -98255611 + MLT1J LTR MaLR 45 309 -202 1612 149 30 34 chr12 45531293 45531588 -98254867 - AluJo SINE Alu -18 294 1 1006 250 31 87 chr12 45532769 45533185 -98253270 - MLT1J LTR MaLR -19 492 100 189 289 19 19 chr12 45533776 45533828 -98252627 - MER5A DNA MER1_type -56 133 82 225 310 190 25 chr12 45534802 45534960 -98251495 - MIR SINE MIR -8 254 71 330 270 40 46 chr12 45535324 45535476 -98250979 + MER102a DNA MER1_type 71 221 -109 983 140 41 23 chr12 45535476 45535647 -98250808 - AluJb SINE Alu -2 310 137 398 231 60 34 chr12 45535649 45535766 -98250689 + MER102a DNA MER1_type 207 326 -4 23 33 0 0 chr12 45537934 45537964 -98248491 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 45538002 45538023 -98248432 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 45539822 45539843 -98246612 + AT_rich Low_complexity Low_complexity 1 21 0 278 275 79 10 chr12 45541149 45541278 -98245177 - L1MC/D LINE L1 -517 5817 5679 1998 164 0 0 chr12 45542265 45542564 -98243891 - AluSx SINE Alu -13 299 1 40 37 0 0 chr12 45542816 45542870 -98243585 + AT_rich Low_complexity Low_complexity 1 54 0 2109 121 0 3 chr12 45543260 45543558 -98242897 + AluSq SINE Alu 1 297 -16 277 248 191 7 chr12 45547513 45547654 -98238801 + MER3 DNA MER1_type 43 209 0 * 899 158 88 18 chr12 45547654 45547704 -98238751 - MER3 DNA MER1_type -147 62 1 482 219 272 6 chr12 45548035 45548204 -98238251 - MER58C DNA MER1_type 0 215 2 2171 36 66 0 chr12 45551036 45551310 -98235145 + AluY SINE Alu 1 292 -19 2209 109 0 0 chr12 45551465 45551758 -98234697 - AluSc SINE Alu -16 293 1 204 296 204 19 chr12 45551771 45551879 -98234576 - MER5B DNA MER1_type -45 133 6 935 273 184 22 chr12 45551965 45552450 -98234005 + L2 LINE L2 2746 3313 0 1516 193 20 20 chr12 45553739 45554035 -98232420 + AluJo SINE Alu 11 306 -6 1287 243 80 6 chr12 45554112 45554425 -98232030 - MLT1H LTR MaLR -190 359 24 230 276 164 15 chr12 45554447 45554581 -98231874 + MIR SINE MIR 97 250 -12 366 237 311 0 chr12 45554625 45554760 -98231695 + MIR SINE MIR 12 188 -74 1151 155 45 22 chr12 45554829 45555196 -98231259 - MSTB LTR MaLR -3 423 1 2981 168 55 34 chr12 45555196 45555515 -98230940 - MSTB-int LTR MaLR 0 1651 1311 2102 55 4 8 chr12 45555515 45555772 -98230683 + AluY SINE Alu 44 299 -12 2981 168 55 34 chr12 45555772 45556049 -98230406 - MSTB-int LTR MaLR -340 1311 1042 368 203 0 51 chr12 45556066 45556145 -98230310 + MLT1E1 LTR MaLR 41 115 -539 1379 215 44 67 chr12 45556174 45556235 -98230220 - MLT1E3 LTR MaLR 0 624 563 198 0 0 0 chr12 45556235 45556257 -98230198 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2104 107 0 4 chr12 45556257 45556538 -98229917 - AluSx SINE Alu -32 280 1 1379 215 44 67 chr12 45556538 45556974 -98229481 - MLT1E3 LTR MaLR -59 565 124 212 317 53 66 chr12 45557122 45557325 -98229130 - MIR SINE MIR -50 212 11 28 0 0 0 chr12 45557968 45557996 -98228459 + AT_rich Low_complexity Low_complexity 1 28 0 1514 116 31 9 chr12 45558048 45558272 -98228183 + AluSg/x SINE Alu 71 299 -13 1887 135 62 38 chr12 45558309 45558649 -98227806 + MER7A DNA MER2_type 1 346 0 354 143 0 0 chr12 45558651 45558714 -98227741 + (TA)n Simple_repeat Simple_repeat 2 64 0 509 210 116 71 chr12 45559030 45559218 -98227237 + MLT1C LTR MaLR 5 197 -361 * 713 217 13 13 chr12 45559205 45559357 -98227098 + MLT1C LTR MaLR 316 467 0 1656 124 25 84 chr12 45559788 45560110 -98226345 + MER21A LTR ERV1 622 924 -7 340 339 31 8 chr12 45560308 45560435 -98226020 - MIR3 SINE MIR -25 183 54 1741 157 7 27 chr12 45560691 45560985 -98225470 + AluJb SINE Alu 1 288 -24 28 48 0 0 chr12 45560985 45561027 -98225428 + AT_rich Low_complexity Low_complexity 1 42 0 207 100 0 0 chr12 45562078 45562108 -98224347 + (TATG)n Simple_repeat Simple_repeat 2 31 0 266 376 126 17 chr12 45562700 45563408 -98223047 - L2 LINE L2 -209 3063 2201 2211 93 10 0 chr12 45563442 45563742 -98222713 + AluSp SINE Alu 1 303 -10 1460 305 163 39 chr12 45563821 45565030 -98221425 + L2 LINE L2 1528 2886 -428 1136 205 35 35 chr12 45565041 45565295 -98221160 - AluJo SINE Alu -22 290 37 246 284 27 131 chr12 45565305 45565488 -98220967 + L2 LINE L2 2888 3051 -221 22 35 0 0 chr12 45565511 45565540 -98220915 + AT_rich Low_complexity Low_complexity 1 29 0 324 354 19 0 chr12 45565754 45565912 -98220543 - L2 LINE L2 -1307 2007 1847 25 0 0 0 chr12 45566705 45566730 -98219725 + AT_rich Low_complexity Low_complexity 1 25 0 1747 177 10 3 chr12 45566909 45567203 -98219252 - AluJo SINE Alu -16 296 1 547 298 56 23 chr12 45567558 45567773 -98218682 + MIR SINE MIR 20 241 -21 630 274 75 0 chr12 45567931 45568117 -98218338 - MIR SINE MIR -3 259 60 2160 75 51 14 chr12 45568142 45568437 -98218018 + AluY SINE Alu 1 306 -5 601 276 75 27 chr12 45568494 45568788 -98217667 + L1ME4a LINE L1 5552 5859 -262 259 187 93 101 chr12 45568801 45568861 -98217594 + L1ME4a LINE L1 5977 6036 -85 893 97 0 8 chr12 45568861 45568985 -98217470 - L1PA10 LINE L1 -10 6158 6036 259 187 93 101 chr12 45568985 45569063 -98217392 + L1ME4a LINE L1 6036 6114 -7 569 318 120 5 chr12 45569256 45569473 -98216982 + MIR SINE MIR 21 262 0 2194 96 13 10 chr12 45569769 45570071 -98216384 + AluY SINE Alu 1 303 -8 279 266 76 0 chr12 45570455 45570534 -98215921 - MIR SINE MIR -108 154 70 25 51 0 0 chr12 45571425 45571464 -98214991 + AT_rich Low_complexity Low_complexity 1 39 0 310 333 32 16 chr12 45572323 45572509 -98213946 + MER5A DNA MER1_type 1 189 0 2232 119 12 91 chr12 45573129 45573559 -98212896 - MSTD LTR MaLR 0 396 1 314 290 37 62 chr12 45573790 45573952 -98212503 - MIR SINE MIR -102 160 3 346 152 61 91 chr12 45574207 45574339 -98212116 - L1MC4 LINE L1 -1 8041 7914 857 274 16 92 chr12 45574364 45574666 -98211789 - L1MC4a LINE L1 -327 7481 7230 1827 149 30 0 chr12 45574666 45574934 -98211521 - AluJb SINE Alu -36 276 1 857 274 16 92 chr12 45574934 45575131 -98211324 - L1MC4a LINE L1 -578 7230 7020 192 338 41 35 chr12 45575707 45575852 -98210603 - MIR SINE MIR -106 156 11 320 346 32 0 chr12 45577402 45577558 -98208897 + L2 LINE L2 3153 3313 0 198 316 79 13 chr12 45577589 45577665 -98208790 - MIR SINE MIR -174 88 8 591 307 153 39 chr12 45577753 45578444 -98208011 - L2 LINE L2 -38 3234 2471 245 257 38 67 chr12 45578467 45578572 -98207883 - L2 LINE L2 -962 2352 2251 7803 104 27 55 chr12 45578607 45579877 -98206578 + HSMAR2 DNA Mariner 3 1236 -66 2115 118 17 0 chr12 45579877 45580164 -98206291 - AluSx SINE Alu -14 298 7 7803 104 27 55 chr12 45580164 45580229 -98206226 + HSMAR2 DNA Mariner 1236 1301 -1 256 293 0 37 chr12 45580558 45580640 -98205815 + G-rich Low_complexity Low_complexity 3 81 0 2630 174 86 0 chr12 45580653 45581221 -98205234 - Charlie1 DNA MER1_type -1 2760 2144 253 274 164 14 chr12 45581207 45581280 -98205175 - Charlie1 DNA MER1_type -2677 84 1 * 182 282 0 0 chr12 45581446 45581485 -98204970 - L2 LINE L2 -1896 1418 1380 240 193 114 23 chr12 45582154 45582242 -98204213 + L1ME4a LINE L1 5978 6073 -48 361 267 127 27 chr12 45582691 45582841 -98203614 + MIR SINE MIR 84 248 -14 1215 249 154 27 chr12 45583328 45584204 -98202251 - L2 LINE L2 -3 3310 2341 2294 80 7 3 chr12 45584421 45584723 -98201732 - AluSx SINE Alu -7 305 3 231 36 0 0 chr12 45585618 45585646 -98200809 + (TG)n Simple_repeat Simple_repeat 1 28 0 194 316 98 47 chr12 45586284 45586518 -98199937 + L2 LINE L2 2716 2961 -353 582 308 121 38 chr12 45586626 45586842 -98199613 - L2 LINE L2 -1 3312 3115 2333 78 0 7 chr12 45586842 45587137 -98199318 + AluSg SINE Alu 2 294 -16 582 308 121 38 chr12 45587137 45587469 -98198986 - L2 LINE L2 -198 3115 2677 954 321 135 18 chr12 45587509 45588057 -98198398 - L2 LINE L2 -2382 932 321 428 228 269 0 chr12 45590475 45590620 -98195835 - MER5A DNA MER1_type -5 184 1 264 262 60 83 chr12 45590983 45591151 -98195304 + MIR SINE MIR 88 251 -11 2239 164 45 14 chr12 45591403 45591824 -98194631 - L1MB3 LINE L1 -2 6181 5748 1506 195 55 111 chr12 45591892 45592145 -98194310 + MLT1F LTR MaLR 108 327 -215 7403 34 5 5 chr12 45592145 45593105 -98193350 + L1PA5 LINE L1 5186 6145 -9 1506 195 55 111 chr12 45593105 45593303 -98193152 + MLT1F LTR MaLR 327 534 -8 836 333 42 15 chr12 45593324 45593726 -98192729 - L1MEc LINE L1 -5949 447 35 21 36 0 0 chr12 45593906 45593934 -98192521 + AT_rich Low_complexity Low_complexity 1 28 0 3121 106 13 11 chr12 45594248 45594631 -98191824 - L1PA16 LINE L1 -2 6164 5778 1379 204 50 0 chr12 45594631 45594910 -98191545 - AluJo SINE Alu -19 293 1 3121 106 13 11 chr12 45594910 45595000 -98191455 - L1PA16 LINE L1 -388 5778 5690 2099 107 0 0 chr12 45595290 45595594 -98190861 + AluSc SINE Alu 1 304 0 2159 113 3 3 chr12 45596225 45596518 -98189937 + AluSx SINE Alu 1 293 -19 5978 75 38 51 chr12 45598102 45599122 -98187333 - SVA Other Other -518 868 1 248 37 0 74 chr12 45599122 45599176 -98187279 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 748 273 91 74 chr12 45599759 45600243 -98186212 - MLT1J LTR MaLR -18 493 2 334 260 66 88 chr12 45601654 45601835 -98184620 - MER69A DNA AcHobo 0 177 1 231 276 19 38 chr12 45602546 45602651 -98183804 + (TA)n Simple_repeat Simple_repeat 1 103 0 685 284 66 0 chr12 45603183 45603380 -98183075 - MIR SINE MIR 0 262 53 283 284 40 0 chr12 45603420 45603494 -98182961 - MIR SINE MIR -185 77 1 26 64 0 0 chr12 45603556 45603603 -98182852 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr12 45603613 45603640 -98182815 + AT_rich Low_complexity Low_complexity 1 27 0 272 273 128 43 chr12 45604133 45604320 -98182135 + L1ME LINE L1 5575 5777 -344 5564 245 21 21 chr12 45604321 45606969 -98179486 - L1PBb LINE L1 -2702 4146 1396 355 262 0 0 chr12 45607003 45607087 -98179368 - L1PBb LINE L1 -5294 1554 1471 2293 110 0 19 chr12 45607188 45607505 -98178950 - AluSx SINE Alu -1 311 1 288 351 56 32 chr12 45608128 45608411 -98178044 - L1M2 LINE L1 -5273 1565 668 929 314 62 40 chr12 45608456 45608960 -98177495 - L1M2 LINE L1 -6334 515 1 1630 196 36 0 chr12 45608968 45609330 -98177125 - L1M4 LINE L1 -1333 4813 4439 26 0 0 49 chr12 45609331 45609351 -98177104 + AT_rich Low_complexity Low_complexity 1 20 -19 2157 127 0 0 chr12 45609351 45609650 -98176805 + AluY SINE Alu 1 299 -12 26 0 0 49 chr12 45609650 45609670 -98176785 + AT_rich Low_complexity Low_complexity 20 39 0 326 162 162 19 chr12 45609970 45610075 -98176380 + MER113 DNA MER1_type? 35 154 -367 2179 84 14 7 chr12 45611016 45611303 -98175152 - AluSg SINE Alu -19 291 3 620 229 65 25 chr12 45612602 45612881 -98173574 - Charlie2 DNA MER1_type -397 2465 2176 471 268 126 47 chr12 45612883 45613137 -98173318 - Charlie2 DNA MER1_type -2507 275 2 292 254 105 9 chr12 45613580 45613694 -98172761 - L1ME4a LINE L1 -41 6080 5956 1373 202 101 60 chr12 45613725 45614210 -98172245 - MLT1D LTR MaLR 0 505 1 273 247 0 0 chr12 45614411 45614508 -98171947 + (TA)n Simple_repeat Simple_repeat 2 98 0 345 18 36 18 chr12 45614533 45614588 -98171867 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1036 238 26 67 chr12 45614628 45614969 -98171486 + LTR40b LTR ERVL 132 458 -4 4665 33 0 0 chr12 45615068 45615655 -98170800 + L1PA4 LINE L1 5587 6173 0 282 160 0 0 chr12 45615697 45615747 -98170708 + (CATA)n Simple_repeat Simple_repeat 2 51 0 25 65 0 0 chr12 45616571 45616617 -98169838 + AT_rich Low_complexity Low_complexity 1 46 0 939 169 0 0 chr12 45616861 45617027 -98169428 + L1MA6 LINE L1 6133 6298 -2 1468 197 53 3 chr12 45617059 45617358 -98169097 + MLT1A1 LTR MaLR 1 314 -51 313 352 41 7 chr12 45618455 45618600 -98167855 - MIR SINE MIR -76 186 37 489 309 126 41 chr12 45621265 45621725 -98164730 - L2 LINE L2 -1208 2106 1608 30 45 0 0 chr12 45621985 45622029 -98164426 + AT_rich Low_complexity Low_complexity 1 44 0 204 163 0 0 chr12 45622146 45622189 -98164266 + A-rich Low_complexity Low_complexity 1 43 0 596 318 86 13 chr12 45624757 45624990 -98161465 - MIR SINE MIR -11 251 2 456 314 58 11 chr12 45625587 45625778 -98160677 + MIR SINE MIR 1 200 -62 264 192 19 0 chr12 45625804 45625856 -98160599 + MIR SINE MIR 97 149 -113 2555 193 46 59 chr12 45625997 45626610 -98159845 - MER77 LTR ERV1 0 605 1 1478 192 34 86 chr12 45626631 45627016 -98159439 + MLT1A1 LTR MaLR 1 365 0 314 218 0 46 chr12 45627021 45627108 -98159347 + L1MC4 LINE L1 6614 6696 -1346 23 54 0 0 chr12 45627332 45627369 -98159086 + AT_rich Low_complexity Low_complexity 1 37 0 267 316 51 0 chr12 45628027 45628144 -98158311 - L2 LINE L2 -230 3042 2920 387 163 0 7 chr12 45628206 45628283 -98158172 - AluJ/FRAM SINE Alu -7 295 233 181 300 33 0 chr12 45628625 45628685 -98157770 + MIR SINE MIR 70 131 -131 1217 168 105 0 chr12 45628691 45628900 -98157555 - AluSx SINE Alu -81 231 1 205 250 21 0 chr12 45629044 45629092 -98157363 - L2 LINE L2 -4 3309 3261 904 225 20 5 chr12 45629132 45629332 -98157123 + MER63A DNA MER1_type 8 210 0 245 306 75 30 chr12 45629397 45629596 -98156859 - L2 LINE L2 -654 2660 2453 309 338 15 23 chr12 45629814 45629947 -98156508 + MIR SINE MIR 22 153 -109 340 213 52 97 chr12 45629961 45630115 -98156340 - MIR SINE MIR -43 165 63 339 286 119 48 chr12 45630151 45630319 -98156136 - MIR SINE MIR -13 249 70 27 29 0 0 chr12 45630663 45630697 -98155758 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 45630824 45630847 -98155608 + AT_rich Low_complexity Low_complexity 1 23 0 1132 292 62 8 chr12 45632179 45632535 -98153920 - LTR16A LTR ERVL -48 402 28 499 311 31 18 chr12 45633863 45634088 -98152367 + MIR SINE MIR 33 260 -2 3522 75 4 11 chr12 45634120 45634589 -98151866 - MER41A LTR ERV1 -88 466 1 327 342 17 17 chr12 45635144 45635261 -98151194 - MER5A DNA MER1_type -1 188 72 2011 121 21 3 chr12 45635280 45635569 -98150886 - AluSx SINE Alu -18 294 1 2383 88 3 3 chr12 45636084 45636390 -98150065 + AluSc SINE Alu 1 306 -3 248 210 272 12 chr12 45637235 45637316 -98149139 - L2 LINE L2 -22 3291 3190 714 269 98 37 chr12 45637356 45637653 -98148802 + MER102b DNA MER1_type 26 340 -1 6719 51 28 14 chr12 45640894 45642329 -98144126 + L1PA7 LINE L1 4709 6154 0 1992 75 0 8 chr12 45642064 45642331 -98144124 + L1PA7 LINE L1 5890 6154 0 23 33 0 0 chr12 45642764 45642794 -98143661 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr12 45642871 45642910 -98143545 + AT_rich Low_complexity Low_complexity 1 39 0 256 302 0 0 chr12 45642917 45642980 -98143475 + GA-rich Low_complexity Low_complexity 1 63 0 235 316 32 21 chr12 45643006 45643101 -98143354 - MIR3 SINE MIR -5 203 108 357 338 79 47 chr12 45644868 45645185 -98141270 - L3 LINE CR1 -4 1573 1247 7821 116 37 3 chr12 45645189 45646377 -98140078 - Tigger1 DNA MER2_type 0 2418 1191 204 343 36 50 chr12 45646808 45646948 -98139507 + L2 LINE L2 3176 3313 0 22 70 0 0 chr12 45647301 45647344 -98139111 + AT_rich Low_complexity Low_complexity 1 43 0 1709 163 5 122 chr12 45647358 45647800 -98138655 - MLT1B LTR MaLR 0 390 1 320 394 39 26 chr12 45647821 45647976 -98138479 - L2 LINE L2 -4 3268 3112 777 318 99 56 chr12 45648258 45649063 -98137392 - L2 LINE L2 -554 2760 1921 294 73 0 0 chr12 45649111 45649152 -98137303 + (GA)n Simple_repeat Simple_repeat 1 41 0 652 278 96 86 chr12 45649152 45649392 -98137063 - LTR33 LTR ERVL -210 311 66 2467 41 9 35 chr12 45649392 45649711 -98136744 + AluY SINE Alu 1 311 0 652 278 96 86 chr12 45649711 45649772 -98136683 - LTR33 LTR ERVL -455 66 7 274 271 47 12 chr12 45652674 45652759 -98133696 + L2 LINE L2 3221 3308 -5 24 0 0 0 chr12 45652776 45652800 -98133655 + AT_rich Low_complexity Low_complexity 1 24 0 1451 271 125 51 chr12 45652961 45654358 -98132097 + L1ME LINE L1 6 1467 -4613 383 22 0 0 chr12 45656202 45656247 -98130208 - L1P LINE L1 -1678 4468 4424 7842 17 0 0 chr12 45656247 45657318 -98129137 + L1PA3 LINE L1 5085 6155 0 1937 274 19 132 chr12 45657414 45658614 -98127841 + L1M2 LINE L1 8 1072 -5777 738 252 121 53 chr12 45658805 45659419 -98127036 + L1ME2 LINE L1 1165 1813 -4613 7011 175 28 76 chr12 45659444 45660192 -98126263 + L1ME1 LINE L1 66 848 -5578 2305 138 25 0 chr12 45660192 45660547 -98125908 + THE1B LTR MaLR 1 364 0 7011 175 28 76 chr12 45660547 45660829 -98125626 + L1ME1 LINE L1 848 1142 -5284 1727 153 15 8 chr12 45660829 45661091 -98125364 + AluSx SINE Alu 5 268 -44 7011 175 28 76 chr12 45661091 45661748 -98124707 + L1ME1 LINE L1 1142 1674 -4752 270 0 0 0 chr12 45661775 45661805 -98124650 + (CA)n Simple_repeat Simple_repeat 1 30 0 1678 128 30 0 chr12 45661822 45662119 -98124336 + L1ME2 LINE L1 2052 2357 -4069 1290 246 56 13 chr12 45662122 45662569 -98123886 + L1ME2 LINE L1 2451 2916 -3510 566 155 70 8 chr12 45662578 45662707 -98123748 + L1ME2 LINE L1 3164 3300 -3126 562 207 0 33 chr12 45662749 45662870 -98123585 + L1MC1 LINE L1 6211 6327 -6 239 182 121 61 chr12 45662870 45662969 -98123486 + L1ME2 LINE L1 5698 5802 -656 1438 235 29 2 chr12 45662984 45663396 -98123059 + L1ME2 LINE L1 5764 6212 -232 348 282 47 39 chr12 45663487 45663742 -98122713 + L1ME1 LINE L1 1812 2068 -4358 820 247 66 34 chr12 45663767 45664201 -98122254 + L1ME1 LINE L1 2293 2700 -3726 186 235 49 49 chr12 45664223 45664304 -98122151 + L2 LINE L2 699 779 -2535 5746 26 0 1 chr12 45664312 45665000 -98121455 - L1PA3 LINE L1 -1036 5110 4424 7870 16 0 0 chr12 45665000 45666071 -98120384 + L1PA3 LINE L1 5085 6155 0 1955 285 127 81 chr12 45666167 45667541 -98118914 + L1M2 LINE L1 8 1445 -5404 4829 158 32 13 chr12 45667560 45668858 -98117597 + L1MA4A LINE L1 4893 6276 -27 4437 251 116 39 chr12 45668890 45669324 -98117131 + L1ME1 LINE L1 2689 3088 -3338 2209 113 3 0 chr12 45669324 45669617 -98116838 + AluSp SINE Alu 1 294 -19 4437 251 116 39 chr12 45669617 45670309 -98116146 + L1ME1 LINE L1 3088 3726 -2700 2533 23 40 10 chr12 45670309 45670611 -98115844 + AluY SINE Alu 1 311 0 4437 251 116 39 chr12 45670611 45671896 -98114559 + L1ME1 LINE L1 3726 5286 -1140 1773 246 31 20 chr12 45671901 45672356 -98114099 + L1M1 LINE L1 25 484 -7081 * 8330 137 21 18 chr12 45672342 45674865 -98111590 + L1MA1 LINE L1 3701 6225 -77 1589 163 4 8 chr12 45674866 45675117 -98111338 + AluSx SINE Alu 49 298 -14 1015 165 0 6 chr12 45675117 45675275 -98111180 + AluJb SINE Alu 135 291 -21 2077 243 76 15 chr12 45675281 45675540 -98110915 + L1ME1 LINE L1 5426 5668 -778 20134 75 3 1 chr12 45675540 45679034 -98107421 - L1PA6 LINE L1 -3 6151 2653 2077 243 76 15 chr12 45679034 45679675 -98106780 + L1ME1 LINE L1 5668 6439 -7 1127 172 0 5 chr12 45679793 45680002 -98106453 + L1MA8 LINE L1 3431 3638 -2508 * 6096 172 25 1 chr12 45679994 45681164 -98105291 + L1MA8 LINE L1 3896 5093 -1053 23 33 0 0 chr12 45681180 45681210 -98105245 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr12 45681884 45681908 -98104547 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7140 26 0 2 chr12 45681917 45682755 -98103700 - L1PA3 LINE L1 -3 6152 5317 4952 127 43 82 chr12 45682750 45684005 -98102450 + L1MA8 LINE L1 5088 6287 -4 * 21 57 0 0 chr12 45684102 45684137 -98102318 + AT_rich Low_complexity Low_complexity 1 35 0 1818 142 23 32 chr12 45685721 45686030 -98100425 + AluSx SINE Alu 1 306 -6 261 319 116 7 chr12 45686655 45686793 -98099662 - MIR3 SINE MIR 0 208 56 322 219 26 0 chr12 45687293 45687407 -98099048 + GA-rich Low_complexity Low_complexity 4 120 0 497 281 176 0 chr12 45688036 45688189 -98098266 - MER5A DNA MER1_type -6 183 4 409 296 123 48 chr12 45689210 45689561 -98096894 - L2 LINE L2 -829 2485 2109 2533 156 31 21 chr12 45690859 45691345 -98095110 + L1PA16 LINE L1 5676 6166 0 656 173 0 0 chr12 45692000 45692110 -98094345 - AluJ SINE Alu -11 301 192 894 147 0 7 chr12 45692110 45692246 -98094209 - AluJ SINE Alu -171 141 7 24 0 0 0 chr12 45692292 45692316 -98094139 + AT_rich Low_complexity Low_complexity 1 24 0 666 100 0 0 chr12 45692575 45692665 -98093790 + AluSg/x SINE Alu 209 298 -12 23 0 0 0 chr12 45692711 45692734 -98093721 + AT_rich Low_complexity Low_complexity 1 23 0 494 251 47 47 chr12 45693360 45693551 -98092904 + L2 LINE L2 3123 3313 0 2547 54 0 0 chr12 45693797 45694094 -98092361 - AluY SINE Alu -14 297 1 253 263 0 0 chr12 45695525 45695582 -98090873 + L2 LINE L2 3241 3297 -16 1937 174 14 8 chr12 45696326 45696687 -98089768 + MLT1A1 LTR MaLR 1 363 -2 234 232 208 56 chr12 45696687 45696812 -98089643 - MIR SINE MIR -19 243 100 1575 298 68 16 chr12 45697992 45698620 -98087835 + MLT2F LTR ERVL 1 661 -2 270 295 0 67 chr12 45699010 45699115 -98087340 - L2 LINE L2 -18 3295 3198 192 224 0 0 chr12 45699660 45699709 -98086746 - L2 LINE L2 -1 3312 3264 274 313 61 27 chr12 45699846 45699993 -98086462 + MIR SINE MIR 111 262 0 214 377 18 0 chr12 45700290 45700404 -98086051 + L2 LINE L2 1981 2096 -1218 366 336 76 40 chr12 45700406 45700656 -98085799 + L2 LINE L2 2482 2740 -574 1831 215 22 17 chr12 45700674 45701124 -98085331 + L1MC3 LINE L1 7341 7766 -19 1886 246 70 31 chr12 45702050 45702590 -98083865 - MLT1E LTR MaLR 0 593 33 390 219 55 77 chr12 45702591 45702774 -98083681 - LTR52 LTR ERVL 0 421 243 194 104 0 83 chr12 45702774 45702822 -98083633 + (T)n Simple_repeat Simple_repeat 1 44 0 3988 7 0 0 chr12 45702824 45703274 -98083181 - L1HS LINE L1 0 6155 5706 * 13329 23 0 5 chr12 45703272 45704866 -98081589 + L1P LINE L1 2871 4456 -1690 909 225 16 32 chr12 45704866 45705119 -98081336 - LTR52 LTR ERVL -171 250 2 328 296 0 0 chr12 45705202 45705273 -98081182 + L2 LINE L2 3200 3270 -2 252 0 0 0 chr12 45705300 45705328 -98081127 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4102 51 34 6 chr12 45705329 45705859 -98080596 - L1PA7 LINE L1 -10 6144 5600 334 331 79 16 chr12 45706053 45706180 -98080275 + L2 LINE L2 3122 3256 -16 245 183 17 0 chr12 45711175 45711235 -98075220 + CT-rich Low_complexity Low_complexity 2 62 0 222 37 0 0 chr12 45711235 45711262 -98075193 + (CA)n Simple_repeat Simple_repeat 1 27 0 244 378 58 17 chr12 45712713 45712885 -98073570 - L2 LINE L2 -160 3112 2934 1491 172 64 17 chr12 45713141 45713438 -98073017 - AluJb SINE Alu -1 311 1 2540 62 0 7 chr12 45713502 45713810 -98072645 + AluY SINE Alu 1 306 -5 1397 123 9 0 chr12 45714878 45715089 -98071366 + L1MA3 LINE L1 5676 5888 -417 2259 74 7 17 chr12 45718781 45719077 -98067378 + AluY SINE Alu 1 293 -18 5047 240 7 12 chr12 45720650 45721951 -98064504 + L1P LINE L1 1026 2319 -3827 3998 179 18 6 chr12 45722236 45722792 -98063663 + L1P LINE L1 4233 4802 -1344 2088 133 0 0 chr12 45722792 45723086 -98063369 + AluSx SINE Alu 19 312 0 3998 179 18 6 chr12 45723086 45723315 -98063140 + L1P LINE L1 4802 5027 -1119 439 265 53 47 chr12 45725024 45725194 -98061261 - L1ME3A LINE L1 -18 6152 5982 731 215 10 25 chr12 45725309 45725509 -98060946 - L1ME3A LINE L1 -250 5920 5724 758 225 157 12 chr12 45725511 45725900 -98060555 - L1ME3A LINE L1 -592 5570 5122 451 259 95 19 chr12 45725926 45726243 -98060212 - L1M4 LINE L1 -869 5277 4937 2072 117 0 3 chr12 45726545 45726851 -98059604 - AluSx SINE Alu 0 305 1 358 269 125 37 chr12 45726970 45727186 -98059269 - L1M4 LINE L1 -2978 3168 2934 2193 113 0 22 chr12 45727186 45727506 -98058949 - AluSq SINE Alu 0 313 1 406 63 0 0 chr12 45727668 45727731 -98058724 + Alu SINE Alu 250 312 -6 219 69 0 0 chr12 45727736 45727765 -98058690 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2276 99 0 0 chr12 45727777 45728071 -98058384 + AluSg SINE Alu 1 294 -16 244 263 61 10 chr12 45728629 45728728 -98057727 - HAL1b LINE L1 -767 581 478 433 291 76 38 chr12 45728796 45729139 -98057316 - HAL1b LINE L1 -896 452 97 324 158 0 0 chr12 45729154 45729211 -98057244 + C-rich Low_complexity Low_complexity 3 59 0 1064 283 154 52 chr12 45729433 45729611 -98056844 + HAL1 LINE L1 1012 1170 -1337 2584 55 0 0 chr12 45729611 45729921 -98056534 + AluYa5 SINE Alu 1 310 -1 1064 283 154 52 chr12 45729921 45731003 -98055452 + HAL1 LINE L1 1170 2401 -106 297 248 178 0 chr12 45731015 45731116 -98055339 + L3 LINE CR1 1212 1330 -247 2266 98 0 0 chr12 45731642 45731958 -98054497 - AluSq SINE Alu 0 316 1 21 0 0 0 chr12 45732044 45732065 -98054390 + AT_rich Low_complexity Low_complexity 1 21 0 2214 108 7 0 chr12 45733093 45733399 -98053056 - AluY SINE Alu -3 308 1 185 388 30 0 chr12 45734299 45734366 -98052089 + L2 LINE L2 3203 3271 -1 1723 235 106 80 chr12 45734734 45735642 -98050813 + L1ME3A LINE L1 5231 6161 -9 424 292 151 14 chr12 45735812 45736031 -98050424 - MIR SINE MIR 0 262 14 2575 24 10 7 chr12 45736815 45737112 -98049343 - AluY SINE Alu -13 298 1 407 358 122 19 chr12 45737125 45737446 -98049009 + L2 LINE L2 2916 3269 -3 1172 245 156 58 chr12 45738333 45738608 -98047847 + Charlie7 DNA MER1_type 1544 1791 -821 2294 87 0 3 chr12 45738608 45738897 -98047558 - AluSc SINE Alu -19 290 3 1172 245 156 58 chr12 45738897 45739581 -98046874 + Charlie7 DNA MER1_type 1791 2597 -15 264 30 0 0 chr12 45740016 45740049 -98046406 + (CA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr12 45740712 45740742 -98045713 + AT_rich Low_complexity Low_complexity 1 30 0 249 108 0 0 chr12 45741049 45741086 -98045369 + (TTC)n Simple_repeat Simple_repeat 3 39 0 2376 97 0 3 chr12 45741088 45741399 -98045056 - AluSx SINE Alu -2 310 1 23 0 0 0 chr12 45742497 45742520 -98043935 + AT_rich Low_complexity Low_complexity 1 23 0 1183 226 9 0 chr12 45743422 45743643 -98042812 - MER58A DNA MER1_type 0 224 2 319 301 150 18 chr12 45744012 45744125 -98042330 + L2 LINE L2 3141 3268 -4 21 36 0 0 chr12 45744994 45745022 -98041433 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr12 45745103 45745141 -98041314 + AT_rich Low_complexity Low_complexity 1 38 0 194 91 30 0 chr12 45745284 45745317 -98041138 + A-rich Low_complexity Low_complexity 2 35 0 2537 114 8 13 chr12 45745339 45745732 -98040723 + L1PA11 LINE L1 5784 6174 0 201 295 16 16 chr12 45746873 45746934 -98039521 + L2 LINE L2 3194 3254 -18 1677 137 0 4 chr12 45747229 45747484 -98038971 + AluJb SINE Alu 50 303 -9 31 26 0 0 chr12 45748856 45748894 -98037561 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 45749195 45749223 -98037232 + AT_rich Low_complexity Low_complexity 1 28 0 423 295 25 0 chr12 45749624 45749746 -98036709 - MIR SINE MIR -73 189 65 1348 162 90 59 chr12 45752155 45752445 -98034010 - AluJb SINE Alu -13 299 1 480 62 0 0 chr12 45753967 45754031 -98032424 + (CA)n Simple_repeat Simple_repeat 1 64 0 2068 138 33 31 chr12 45755255 45755647 -98030808 + L1MC2 LINE L1 5937 6329 -15 2372 83 3 6 chr12 45755647 45755959 -98030496 + AluY SINE Alu 1 311 0 356 294 65 0 chr12 45755991 45756121 -98030334 + MLT1I LTR MaLR 278 387 -22 211 296 41 20 chr12 45756168 45756266 -98030189 - L2 LINE L2 -534 2780 2681 601 314 34 37 chr12 45756295 45756645 -98029810 + HAL1 LINE L1 39 387 -2120 1133 175 154 0 chr12 45756655 45756943 -98029512 - MER33 DNA MER1_type 0 324 1 1107 279 42 76 chr12 45756947 45757539 -98028916 + HAL1 LINE L1 483 1054 -1453 1549 269 111 25 chr12 45757591 45758393 -98028062 + HAL1 LINE L1 1237 2107 -400 2255 97 3 16 chr12 45760427 45760735 -98025720 - AluSx SINE Alu -8 304 1 2057 60 0 4 chr12 45761110 45761376 -98025079 + AluY SINE Alu 41 305 -6 187 158 18 18 chr12 45761568 45761625 -98024830 + (TA)n Simple_repeat Simple_repeat 2 58 0 235 331 118 8 chr12 45761740 45761867 -98024588 + MIR SINE MIR 49 189 -73 2348 96 0 0 chr12 45762542 45762844 -98023611 - AluSq SINE Alu -11 302 1 918 169 19 0 chr12 45763084 45763244 -98023211 - L1MB5 LINE L1 -8 6166 6004 22 35 0 0 chr12 45763701 45763730 -98022725 + AT_rich Low_complexity Low_complexity 1 29 0 1242 225 56 0 chr12 45765849 45765964 -98020491 + AluJo SINE Alu 1 108 -197 207 0 0 0 chr12 45765964 45765987 -98020468 + (CA)n Simple_repeat Simple_repeat 2 24 0 1242 225 56 0 chr12 45765987 45766161 -98020294 + AluJo SINE Alu 108 305 0 21 0 0 0 chr12 45766718 45766739 -98019716 + AT_rich Low_complexity Low_complexity 1 21 0 10801 182 7 0 chr12 45767034 45769939 -98016516 + L1PA13 LINE L1 3245 6161 -2 401 317 102 12 chr12 45770097 45770264 -98016191 + MER5A DNA MER1_type 7 188 -1 186 43 0 0 chr12 45770464 45770487 -98015968 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr12 45770996 45771019 -98015436 + AT_rich Low_complexity Low_complexity 1 23 0 731 161 19 12 chr12 45771021 45771182 -98015273 - L1MA8 LINE L1 0 6291 6130 2221 129 29 0 chr12 45771182 45771531 -98014924 + L1MA6 LINE L1 5601 5959 -341 316 349 58 67 chr12 45771801 45772131 -98014324 + L2 LINE L2 2939 3265 -7 25 51 0 0 chr12 45773986 45774025 -98012430 + AT_rich Low_complexity Low_complexity 1 39 0 750 303 66 19 chr12 45774641 45775004 -98011451 + L2 LINE L2 1256 1635 -1679 935 220 54 48 chr12 45775012 45775173 -98011282 + MER5C DNA MER1_type 5 163 -161 3228 148 32 25 chr12 45775173 45775540 -98010915 - L1MB2 LINE L1 -2 6169 5806 1107 232 15 93 chr12 45775540 45775936 -98010519 - MLT1A1 LTR MaLR 0 365 1 3228 148 32 25 chr12 45775936 45775998 -98010457 - L1MB2 LINE L1 -365 5806 5746 1674 111 0 0 chr12 45775998 45776224 -98010231 - AluSg/x SINE Alu -15 295 70 3228 148 32 25 chr12 45776224 45776393 -98010062 - L1MB2 LINE L1 -425 5746 5566 935 220 54 48 chr12 45776393 45776544 -98009911 + MER5C DNA MER1_type 163 319 -5 457 234 141 70 chr12 45776588 45776815 -98009640 + L2 LINE L2 1648 1890 -1424 2700 151 78 21 chr12 45776836 45777352 -98009103 - LTR10A LTR ERV1 -64 545 1 1761 258 88 74 chr12 45777364 45778228 -98008227 + L2 LINE L2 1921 2796 -518 1680 145 8 67 chr12 45778229 45778595 -98007860 - MER4A LTR ERV1 0 664 262 235 153 375 14 chr12 45778595 45778667 -98007788 - MER4A LTR ERV1 -566 98 1 1117 247 49 88 chr12 45778667 45779080 -98007375 + L2 LINE L2 2794 3194 -119 6167 73 0 0 chr12 45779080 45779860 -98006595 + LTR17 LTR ERV1 1 780 0 1117 247 49 88 chr12 45779860 45779975 -98006480 + L2 LINE L2 3194 3312 -1 22 35 0 0 chr12 45780421 45780450 -98006005 + AT_rich Low_complexity Low_complexity 1 29 0 2954 230 43 43 chr12 45780587 45781251 -98005204 + L1ME2 LINE L1 5356 6019 -145 225 0 0 0 chr12 45781251 45781276 -98005179 + (TA)n Simple_repeat Simple_repeat 1 25 0 2145 113 13 0 chr12 45781276 45781577 -98004878 - AluSq SINE Alu -8 305 1 2954 230 43 43 chr12 45781577 45781720 -98004735 + L1ME2 LINE L1 6017 6164 0 21 89 0 0 chr12 45784559 45784615 -98001840 + AT_rich Low_complexity Low_complexity 1 56 0 295 286 66 0 chr12 45784638 45784729 -98001726 + MIR SINE MIR 160 256 -6 180 0 0 0 chr12 45785451 45785471 -98000984 + (CAA)n Simple_repeat Simple_repeat 2 21 0 308 274 110 68 chr12 45785526 45785672 -98000783 + MIR SINE MIR 3 154 -108 21 0 0 0 chr12 45786714 45786735 -97999720 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr12 45786744 45786777 -97999678 + (TA)n Simple_repeat Simple_repeat 2 34 0 31 0 0 0 chr12 45789242 45789273 -97997182 + AT_rich Low_complexity Low_complexity 1 31 0 182 213 238 88 chr12 45791155 45791235 -97995220 + MIR SINE MIR 79 170 -92 38274 30 16 2 chr12 45791259 45797294 -97989161 + L1PA2 LINE L1 2 6155 0 21 0 0 0 chr12 45797334 45797355 -97989100 + AT_rich Low_complexity Low_complexity 1 21 0 260 91 23 0 chr12 45797913 45797957 -97988498 + (TC)n Simple_repeat Simple_repeat 1 45 0 325 286 92 63 chr12 45798268 45799036 -97987419 + L1MEd LINE L1 680 1571 -919 685 305 35 39 chr12 45799095 45799380 -97987075 + MER21B LTR ERV1 508 791 -72 604 296 86 31 chr12 45799591 45800135 -97986320 + L1MEd LINE L1 2573 3146 -2983 316 269 102 32 chr12 45800206 45800392 -97986063 + L1MEd LINE L1 3242 3440 -2689 289 299 7 15 chr12 45800462 45800599 -97985856 + L1MEd LINE L1 3601 3736 -2393 1136 137 40 1 chr12 45800635 45800836 -97985619 - L1MA7 LINE L1 -410 5741 5528 2824 130 40 38 chr12 45800836 45801385 -97985070 + L1MA7 LINE L1 5737 6289 -2 346 253 148 20 chr12 45801403 45801422 -97985033 + L1MEd LINE L1 3834 3849 -2280 905 62 77 8 chr12 45801422 45801552 -97984903 + MER85 DNA T2_type 1 139 0 346 253 148 20 chr12 45801552 45801734 -97984721 + L1MEd LINE L1 3849 4061 -2068 376 319 70 26 chr12 45801737 45801966 -97984489 + L1MEd LINE L1 4090 4328 -1801 3629 277 57 30 chr12 45802030 45803761 -97982694 + L1PBa LINE L1 3 1644 -5219 * 4346 167 39 21 chr12 45803760 45805225 -97981230 + L1PB3 LINE L1 229 1720 -4484 * 8797 159 14 20 chr12 45805212 45807874 -97978581 + L1PB3 LINE L1 3569 6211 0 21 0 0 0 chr12 45807874 45807895 -97978560 + AT_rich Low_complexity Low_complexity 1 21 0 336 302 53 6 chr12 45807986 45808155 -97978300 + L1MEd LINE L1 4600 4776 -1353 508 288 106 24 chr12 45809362 45810027 -97976428 + L1MEd LINE L1 4925 5637 -508 2253 150 3 0 chr12 45811351 45811698 -97974757 + MER7A DNA MER2_type 1 346 0 2684 32 0 0 chr12 45812384 45812693 -97973762 + AluY SINE Alu 1 309 -2 444 262 75 0 chr12 45813651 45813758 -97972697 + MER5B DNA MER1_type 27 141 -37 396 290 186 0 chr12 45813791 45813936 -97972519 + MER5A DNA MER1_type 18 189 0 243 371 95 0 chr12 45814505 45814621 -97971834 - L2 LINE L2 -2 3311 3185 206 274 85 19 chr12 45815650 45815756 -97970699 + MIR SINE MIR 150 262 0 291 397 66 0 chr12 45815918 45816039 -97970416 - L2 LINE L2 -19 3253 3125 845 284 23 5 chr12 45816457 45816675 -97969780 - MIR SINE MIR -10 252 31 257 263 59 85 chr12 45816819 45816937 -97969518 + MIR SINE MIR 18 132 -76 201 74 0 0 chr12 45817118 45817145 -97969310 + (CA)n Simple_repeat Simple_repeat 2 28 0 584 218 18 0 chr12 45819046 45819156 -97967299 + MER81 DNA DNA 2 113 -1 2161 92 0 51 chr12 45819772 45820088 -97966367 - AluSc SINE Alu -9 300 1 2152 129 0 0 chr12 45820304 45820614 -97965841 - AluSx SINE Alu -2 310 1 248 262 0 16 chr12 45821026 45821087 -97965368 - L2 LINE L2 0 3313 3254 2283 104 0 3 chr12 45821338 45821645 -97964810 - AluSq SINE Alu -7 306 1 260 274 0 0 chr12 45821669 45821731 -97964724 + MER94 DNA DNA 48 109 -25 189 0 0 0 chr12 45821747 45821768 -97964687 + (CG)n Simple_repeat Simple_repeat 1 21 0 * 198 0 0 0 chr12 45821767 45821789 -97964666 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 286 18 0 chr12 45823468 45823524 -97962931 + CT-rich Low_complexity Low_complexity 4 60 0 29 78 0 0 chr12 45823669 45823733 -97962722 + AT_rich Low_complexity Low_complexity 1 64 0 32 0 0 0 chr12 45823800 45823832 -97962623 + AT_rich Low_complexity Low_complexity 1 32 0 5137 137 16 7 chr12 45823843 45824686 -97961769 - L1PA15 LINE L1 0 6165 5315 250 287 0 23 chr12 45824996 45825083 -97961372 - L2 LINE L2 -101 3212 3128 714 203 63 0 chr12 45825168 45825311 -97961144 + L1ME LINE L1 5555 5706 -458 * 3052 187 18 22 chr12 45825293 45826263 -97960192 + L1MB2 LINE L1 4771 5826 -345 799 211 20 0 chr12 45826268 45826446 -97960009 + FRAM SINE Alu 1 50 0 1617 157 42 53 chr12 45826446 45826767 -97959688 + L1MB2 LINE L1 5818 6136 -35 2135 91 24 14 chr12 45826767 45827063 -97959392 - AluSg SINE Alu -11 299 1 1617 157 42 53 chr12 45827063 45827098 -97959357 + L1MB2 LINE L1 6136 6170 -1 429 139 14 0 chr12 45827105 45827177 -97959278 + L1ME LINE L1 5691 5763 -399 1754 161 29 3 chr12 45827205 45827546 -97958909 + L1MA9 LINE L1 5958 6307 -5 2703 113 12 5 chr12 45828023 45828439 -97958016 + L1PA14 LINE L1 5740 6158 -3 399 252 148 0 chr12 45828575 45828690 -97957765 - MIR SINE MIR -72 190 59 240 292 46 0 chr12 45828820 45828885 -97957570 - MIR SINE MIR -180 82 15 24 0 0 0 chr12 45828885 45828909 -97957546 + AT_rich Low_complexity Low_complexity 1 24 0 2695 133 32 16 chr12 45828909 45829530 -97956925 - L1PA10 LINE L1 -8 6297 5665 24 53 0 0 chr12 45829838 45829876 -97956579 + AT_rich Low_complexity Low_complexity 1 38 0 242 256 50 81 chr12 45830136 45830296 -97956159 + L1P LINE L1 4089 4243 -1903 233 305 76 0 chr12 45830351 45830482 -97955973 + L1MC/D LINE L1 5789 5929 -1879 32 0 0 0 chr12 45830657 45830689 -97955766 + AT_rich Low_complexity Low_complexity 1 32 0 566 213 37 29 chr12 45832332 45832468 -97953987 - MIR SINE MIR 0 262 126 26 74 0 0 chr12 45832468 45832522 -97953933 + AT_rich Low_complexity Low_complexity 1 54 0 196 262 66 0 chr12 45832522 45832583 -97953872 - MIR SINE MIR -124 138 74 211 238 188 0 chr12 45832632 45832712 -97953743 - MIR SINE MIR -94 168 74 23 0 0 0 chr12 45832724 45832747 -97953708 + AT_rich Low_complexity Low_complexity 1 23 0 213 321 57 19 chr12 45833016 45833122 -97953333 - MIR SINE MIR -105 157 48 4557 41 2 2 chr12 45833796 45834357 -97952098 + L1PA4 LINE L1 5593 6153 -2 216 0 0 0 chr12 45834372 45834396 -97952059 + (A)n Simple_repeat Simple_repeat 1 24 0 642 168 0 0 chr12 45834430 45834537 -97951918 - FLAM_C SINE Alu -36 107 1 2102 119 3 0 chr12 45834568 45834863 -97951592 + AluSc SINE Alu 1 296 -13 293 247 0 0 chr12 45836908 45836985 -97949470 + L2 LINE L2 1008 1084 -2230 1963 269 107 34 chr12 45836991 45837006 -97949449 + L1M4 LINE L1 3683 3695 -2451 388 82 0 16 chr12 45837006 45837067 -97949388 + L1PA6 LINE L1 6095 6154 0 1963 269 107 34 chr12 45837067 45838134 -97948321 + L1M4 LINE L1 3695 4844 -1302 2401 299 44 28 chr12 45838528 45839442 -97947013 + L2 LINE L2 1884 2811 -503 229 195 182 13 chr12 45839495 45839572 -97946883 + MER69 DNA AcHobo 2434 2523 -3 232 374 62 39 chr12 45840391 45840926 -97945529 - L2 LINE L2 -914 2400 1854 308 209 15 15 chr12 45841187 45841254 -97945201 + Charlie8 DNA MER1_type 127 193 -2224 2031 112 37 40 chr12 45842304 45842680 -97943775 - THE1C LTR MaLR 0 375 1 12574 197 55 24 chr12 45843383 45846435 -97940020 + L1PB3 LINE L1 199 3156 -3714 2262 68 3 17 chr12 45846435 45846730 -97939725 + AluY SINE Alu 1 291 -20 12574 197 55 24 chr12 45846730 45850068 -97936387 + L1PB3 LINE L1 3156 6862 -8 793 279 48 6 chr12 45851238 45851550 -97934905 + L1ME3A LINE L1 5638 5962 -208 1939 160 31 18 chr12 45851804 45852186 -97934269 + L1MA8 LINE L1 5902 6288 -3 24 0 0 0 chr12 45852186 45852210 -97934245 + AT_rich Low_complexity Low_complexity 1 24 0 183 392 72 10 chr12 45852673 45852770 -97933685 - L2 LINE L2 -281 2991 2889 6932 9 0 0 chr12 45852818 45853599 -97932856 - L1HS LINE L1 -1 6154 5374 8521 23 0 0 chr12 45853599 45854612 -97931843 + L1HS LINE L1 4350 5362 -784 964 316 16 30 chr12 45854605 45855039 -97931416 + L1MC4a LINE L1 5511 5938 -1870 * 439 308 86 36 chr12 45855248 45855550 -97930905 + L2 LINE L2 2988 3304 -9 1004 206 121 26 chr12 45855672 45856051 -97930404 + Charlie4a DNA MER1_type 35 449 -59 757 261 15 25 chr12 45856363 45856566 -97929889 - MIR SINE MIR -56 206 6 698 245 178 40 chr12 45856608 45857029 -97929426 - L2 LINE L2 -10 3303 2825 226 87 43 0 chr12 45857315 45857361 -97929094 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1421 151 80 20 chr12 45857361 45857612 -97928843 - AluSq SINE Alu -47 266 1 7032 101 18 20 chr12 45857623 45858905 -97927550 - L1MA1 LINE L1 0 6302 5024 224 380 93 0 chr12 45859014 45859122 -97927333 + L2 LINE L2 3154 3271 -1 2344 98 0 0 chr12 45859209 45859506 -97926949 - AluSg SINE Alu -11 299 3 2226 71 42 3 chr12 45860144 45860427 -97926028 - AluSc SINE Alu -15 294 1 297 284 58 71 chr12 45861514 45861669 -97924786 + MIR SINE MIR 46 198 -64 180 0 0 0 chr12 45862017 45862037 -97924418 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr12 45862702 45862732 -97923723 + AT_rich Low_complexity Low_complexity 1 30 0 1529 189 13 42 chr12 45863274 45863586 -97922869 + AluJo SINE Alu 1 303 -9 279 358 25 25 chr12 45863957 45864119 -97922336 + MLT1J2 LTR MaLR 1 162 -288 209 323 32 0 chr12 45864235 45864297 -97922158 + L2 LINE L2 3241 3304 -9 831 166 90 52 chr12 45865125 45865336 -97921119 - MER20 DNA MER1_type 0 219 1 606 314 106 22 chr12 45865819 45866176 -97920279 + LTR16B LTR ERVL 78 464 0 314 247 8 89 chr12 45868312 45868547 -97917908 + L1M4 LINE L1 3842 4057 -2089 25 99 0 0 chr12 45869312 45869393 -97917062 + AT_rich Low_complexity Low_complexity 1 81 0 30 45 0 0 chr12 45869504 45869548 -97916907 + AT_rich Low_complexity Low_complexity 1 44 0 293 24 0 0 chr12 45869677 45869719 -97916736 + L1MA3 LINE L1 6264 6305 0 775 135 153 0 chr12 45870382 45870545 -97915910 + Charlie4 DNA MER1_type 38 225 -1736 366 325 121 70 chr12 45871711 45872424 -97914031 + L1M2 LINE L1 489 1237 -5612 369 194 250 32 chr12 45873050 45873174 -97913281 + MER69 DNA AcHobo 2373 2523 -3 2286 112 0 3 chr12 45874249 45874561 -97911894 - AluSx SINE Alu 0 312 2 1230 183 33 44 chr12 45875030 45875303 -97911152 + AluJo SINE Alu 22 291 -21 28 29 0 0 chr12 45875303 45875338 -97911117 + AT_rich Low_complexity Low_complexity 1 35 0 416 333 53 4 chr12 45875455 45875667 -97910788 + MIR SINE MIR 34 252 -10 1205 155 28 0 chr12 45875871 45876084 -97910371 - MER20 DNA MER1_type 0 219 1 933 218 58 14 chr12 45876511 45876805 -97909650 - L1MEc LINE L1 -4088 2308 2002 654 283 4 22 chr12 45876895 45877121 -97909334 - L1MEc LINE L1 -4638 1758 1537 6011 81 42 40 chr12 45877472 45878418 -97908037 + SVA Other Other 439 1386 0 15089 190 21 23 chr12 45878437 45880228 -97906227 + L1PA15 LINE L1 1891 3686 -2479 288 0 0 0 chr12 45880228 45880260 -97906195 + (CA)n Simple_repeat Simple_repeat 2 33 0 15089 190 21 23 chr12 45880260 45881229 -97905226 + L1PA15 LINE L1 3686 4656 -1509 340 200 0 0 chr12 45881229 45881284 -97905171 + 5S rRNA rRNA 1 55 -66 15089 190 21 23 chr12 45881284 45882686 -97903769 + L1PA15 LINE L1 4656 6096 -69 30 45 0 0 chr12 45884629 45884673 -97901782 + AT_rich Low_complexity Low_complexity 1 44 0 830 185 27 0 chr12 45884673 45884819 -97901636 - FRAM SINE Alu -30 146 1 2025 61 82 4 chr12 45885065 45885345 -97901110 + AluY SINE Alu 1 302 -9 229 287 108 31 chr12 45885373 45885502 -97900953 - MIR SINE MIR -122 140 2 2467 51 0 0 chr12 45885702 45885998 -97900457 + AluY SINE Alu 1 296 -15 22 35 0 0 chr12 45886121 45886150 -97900305 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr12 45886165 45886216 -97900239 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 45886356 45886385 -97900070 + AT_rich Low_complexity Low_complexity 1 29 0 2035 128 3 0 chr12 45886672 45886970 -97899485 + AluSx SINE Alu 1 299 -13 329 229 101 9 chr12 45887440 45887549 -97898906 - LTR67 LTR ERVL 0 557 439 308 312 199 11 chr12 45888959 45889145 -97897310 + L2 LINE L2 2738 2958 -356 7232 123 19 1 chr12 45889199 45891146 -97895309 - L1MA2 LINE L1 0 6304 4321 1123 162 10 0 chr12 45891147 45891344 -97895111 + LTR9B LTR ERV1 445 643 -1 2406 190 16 37 chr12 45891344 45891860 -97894595 + HUERS-P3b LTR ERV1 1 505 -6913 4918 116 11 9 chr12 45891975 45893357 -97893098 + HUERS-P3b LTR ERV1 891 2337 -5081 1184 147 39 20 chr12 45893341 45893545 -97892910 + HUERS-P3b LTR ERV1 2451 2658 -4760 * 2003 189 50 5 chr12 45893545 45893927 -97892528 - LTR8 LTR ERV1 -292 399 1 5955 84 4 12 chr12 45893927 45894736 -97891719 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16417 100 15 7 chr12 45894727 45897329 -97889126 + HUERS-P3b LTR ERV1 4713 8918 -1 3241 106 58 40 chr12 45897329 45897879 -97888576 + LTR9B LTR ERV1 1 560 -84 592 94 0 0 chr12 45897905 45897990 -97888465 - L1 LINE L1 -1816 4330 4246 416 108 0 15 chr12 45897991 45898056 -97888399 - Alu SINE Alu -15 297 234 2851 199 66 7 chr12 45898060 45898623 -97887832 - L1M1 LINE L1 -6673 892 297 3704 164 42 5 chr12 45898624 45899476 -97886979 - L1 LINE L1 -3211 4354 3461 18944 153 26 56 chr12 45899487 45901374 -97885081 - L1 LINE L1 -4067 3498 1767 267 31 0 0 chr12 45901374 45901406 -97885049 + (TC)n Simple_repeat Simple_repeat 1 32 0 18944 153 26 56 chr12 45901406 45903111 -97883344 - L1 LINE L1 -5798 1767 13 499 304 144 8 chr12 45903126 45903389 -97883066 + L2 LINE L2 3014 3312 -1 416 316 86 0 chr12 45903566 45903683 -97882772 + L2 LINE L2 3146 3272 0 545 192 0 58 chr12 45903798 45903918 -97882537 - L2 LINE L2 -1 3312 3200 303 286 120 56 chr12 45904226 45904492 -97881963 - L1 LINE L1 -3627 2519 2237 911 309 33 25 chr12 45904591 45904950 -97881505 - LTR16B LTR ERVL -26 438 77 281 262 67 20 chr12 45905054 45905069 -97881386 - L1MA10 LINE L1 -3 6331 6317 1764 182 46 105 chr12 45905069 45905535 -97880920 - L1ME2 LINE L1 -9 6224 5732 2361 58 0 4 chr12 45905535 45905846 -97880609 - AluSc SINE Alu 0 317 8 1764 182 46 105 chr12 45905846 45906005 -97880450 - L1ME2 LINE L1 -501 5732 5635 1906 128 32 52 chr12 45906005 45906349 -97880106 + MER1B DNA MER1_type 1 337 0 1764 182 46 105 chr12 45906349 45906368 -97880087 - L1ME2 LINE L1 -598 5635 5616 1525 231 58 25 chr12 45906397 45906950 -97879505 - L1ME2 LINE L1 -1543 4672 4102 1007 164 6 17 chr12 45907236 45907413 -97879042 + FAM SINE Alu 1 175 0 24 32 0 0 chr12 45909187 45909218 -97877237 + AT_rich Low_complexity Low_complexity 1 31 0 223 237 51 0 chr12 45909599 45909658 -97876797 + MIR SINE MIR 180 241 -21 3469 130 41 3 chr12 45909734 45910398 -97876057 - L1MA8 LINE L1 -426 5865 5170 400 129 48 0 chr12 45910464 45910526 -97875929 + AluS SINE Alu 2 66 -237 2493 84 0 0 chr12 45910555 45910864 -97875591 + AluSc SINE Alu 1 309 0 288 0 0 0 chr12 45910868 45910900 -97875555 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 189 63 11 chr12 45911269 45911364 -97875091 + L1ME3A LINE L1 5850 5949 -221 1787 282 49 34 chr12 45911529 45912284 -97874171 - L1ME2 LINE L1 -2500 3715 2940 1904 126 30 0 chr12 45912284 45912553 -97873902 + AluSx SINE Alu 23 299 -13 1787 282 49 34 chr12 45912553 45912775 -97873680 - L1ME2 LINE L1 -3275 2940 2723 380 259 48 7 chr12 45912794 45912941 -97873514 - L1ME2 LINE L1 -4934 1462 1310 291 244 237 22 chr12 45912959 45913094 -97873361 + MIR SINE MIR 98 261 -1 265 315 141 33 chr12 45913239 45913423 -97873032 + MIR SINE MIR 2 205 -57 208 299 75 0 chr12 45913583 45913650 -97872805 - L2 LINE L2 -8 3264 3193 1806 130 75 32 chr12 45913850 45914195 -97872260 + MER46B DNA MER2_type 2 236 0 21 0 0 0 chr12 45916442 45916463 -97869992 + AT_rich Low_complexity Low_complexity 1 21 0 186 318 0 0 chr12 45916509 45916553 -97869902 - L2 LINE L2 -19 3253 3210 1033 226 89 71 chr12 45916813 45917317 -97869138 + MER113 DNA MER1_type? 4 516 -5 1761 85 147 4 chr12 45917490 45917748 -97868707 - AluSg SINE Alu -15 295 1 249 293 53 33 chr12 45917835 45917985 -97868470 + MIR SINE MIR 64 216 -46 5816 114 21 0 chr12 45918152 45918606 -97867849 + L1PA15 LINE L1 4690 5133 -1032 2200 118 0 0 chr12 45918606 45918902 -97867553 + AluSx SINE Alu 1 296 -16 5816 114 21 0 chr12 45918902 45919914 -97866541 + L1PA15 LINE L1 5133 6163 -2 21 57 0 0 chr12 45920544 45920579 -97865876 + AT_rich Low_complexity Low_complexity 1 35 0 1099 238 8 4 chr12 45920809 45921053 -97865402 - MIR SINE MIR -11 251 7 196 356 69 11 chr12 45921697 45921784 -97864671 - MIR SINE MIR -145 117 26 181 342 135 0 chr12 45922272 45922383 -97864072 + MIR SINE MIR 129 254 -8 1124 211 66 36 chr12 45923310 45923669 -97862786 + L1ME1 LINE L1 5809 6158 -8 1446 172 61 40 chr12 45924236 45924532 -97861923 + AluJo SINE Alu 3 304 -8 259 293 120 52 chr12 45924636 45924827 -97861628 - L3 LINE CR1 -264 1313 1110 218 253 12 108 chr12 45924900 45924983 -97861472 - L3 LINE CR1 -485 1092 1018 714 342 83 23 chr12 45924992 45925340 -97861115 - L3 LINE CR1 -861 716 348 246 86 0 0 chr12 45925978 45926013 -97860442 + HSMAR1 DNA Mariner 1 35 -1252 938 293 91 61 chr12 45926156 45926596 -97859859 + MLT1K LTR MaLR 136 588 0 401 331 80 11 chr12 45926732 45926907 -97859548 + MIR3 SINE MIR 16 202 -6 2557 55 0 6 chr12 45927094 45927405 -97859050 + AluY SINE Alu 1 309 -2 30 0 0 0 chr12 45927405 45927435 -97859020 + AT_rich Low_complexity Low_complexity 1 30 0 2135 115 3 0 chr12 45927839 45928134 -97858321 - AluSg SINE Alu -14 296 1 202 392 92 0 chr12 45929201 45929321 -97857134 + MER5A DNA MER1_type 59 189 0 27 0 0 0 chr12 45929498 45929525 -97856930 + AT_rich Low_complexity Low_complexity 1 27 0 40 37 0 0 chr12 45929611 45929665 -97856790 + AT_rich Low_complexity Low_complexity 1 54 0 633 278 126 5 chr12 45929665 45929888 -97856567 - MIR SINE MIR 0 262 13 26 88 0 0 chr12 45930968 45931036 -97855419 + AT_rich Low_complexity Low_complexity 1 68 0 1873 95 4 0 chr12 45931494 45931746 -97854709 - AluSg SINE Alu -12 298 46 298 250 97 28 chr12 45932293 45932365 -97854090 - L3 LINE CR1 -15 1562 1486 * 389 317 43 19 chr12 45932361 45932522 -97853933 - L2 LINE L2 0 3313 3149 1668 215 132 35 chr12 45932683 45933176 -97853279 + MLT1F LTR MaLR 1 541 -1 509 260 35 81 chr12 45933375 45933548 -97852907 - MIR SINE MIR -34 228 64 255 354 152 0 chr12 45933680 45933779 -97852676 - L3 LINE CR1 -410 1167 1054 25 51 0 0 chr12 45933998 45934037 -97852418 + AT_rich Low_complexity Low_complexity 1 39 0 436 228 13 0 chr12 45934865 45934944 -97851511 + MER81 DNA DNA 32 111 -3 233 264 14 93 chr12 45935222 45935362 -97851093 + L1M4 LINE L1 3409 3537 -2609 2441 61 0 0 chr12 45935542 45935836 -97850619 + AluY SINE Alu 1 294 -17 2030 110 51 54 chr12 45936290 45936662 -97849793 + THE1C LTR MaLR 1 371 -4 411 271 20 66 chr12 45936848 45936999 -97849456 - MER5B DNA MER1_type 0 178 35 1068 200 33 19 chr12 45937019 45937234 -97849221 + MER58A DNA MER1_type 1 218 -6 2659 108 16 0 chr12 45937358 45937727 -97848728 + THE1C LTR MaLR 1 375 0 337 277 95 0 chr12 45939202 45939350 -97847105 + L1ME LINE L1 5617 5778 -343 21 0 0 0 chr12 45939399 45939420 -97847035 + AT_rich Low_complexity Low_complexity 1 21 0 2344 104 3 0 chr12 45939472 45939780 -97846675 + AluSq SINE Alu 1 309 -4 4836 158 34 1 chr12 45939938 45940096 -97846359 - L1PB1 LINE L1 -198 5953 5802 513 0 0 0 chr12 45940096 45940153 -97846302 + (TA)n Simple_repeat Simple_repeat 1 57 0 4836 158 34 1 chr12 45940153 45941652 -97844803 - L1PB1 LINE L1 -349 5802 4238 2450 250 87 10 chr12 45941652 45942449 -97844006 - L1MEc LINE L1 -5102 1294 437 2130 214 45 6 chr12 45944724 45945210 -97841245 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chr12 45945213 45945241 -97841214 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 45945500 45945524 -97840931 + AT_rich Low_complexity Low_complexity 1 24 0 1035 79 0 0 chr12 45946000 45946139 -97840316 - L1PA10 LINE L1 -2 6166 6028 22 0 0 0 chr12 45946803 45946825 -97839630 + AT_rich Low_complexity Low_complexity 1 22 0 2197 124 0 0 chr12 45947703 45948001 -97838454 + AluSx SINE Alu 1 298 -14 308 298 79 48 chr12 45949339 45949448 -97837007 - HAL1 LINE L1 -1198 1309 1205 2777 16 0 0 chr12 45949448 45949757 -97836698 - AluYa5 SINE Alu -2 309 1 308 298 79 48 chr12 45949757 45949962 -97836493 - HAL1 LINE L1 -1302 1205 985 337 272 19 19 chr12 45950085 45950188 -97836267 - MIR SINE MIR -32 230 128 29 60 0 0 chr12 45951566 45951616 -97834839 + AT_rich Low_complexity Low_complexity 1 50 0 34 42 0 0 chr12 45951721 45951769 -97834686 + AT_rich Low_complexity Low_complexity 1 48 0 28 29 0 0 chr12 45952687 45952722 -97833733 + AT_rich Low_complexity Low_complexity 1 35 0 405 0 0 0 chr12 45953615 45953660 -97832795 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1317 164 7 87 chr12 45953668 45953966 -97832489 - AluJo SINE Alu -38 274 1 369 0 0 0 chr12 45954858 45954899 -97831556 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr12 45956782 45956811 -97829644 + AT_rich Low_complexity Low_complexity 1 29 0 30 77 0 0 chr12 45957338 45957403 -97829052 + AT_rich Low_complexity Low_complexity 1 65 0 556 308 96 29 chr12 45958943 45959183 -97827272 - MIR SINE MIR -6 256 1 228 250 0 0 chr12 45959572 45959624 -97826831 + L2 LINE L2 3258 3309 -4 27 49 0 0 chr12 45960022 45960063 -97826392 + AT_rich Low_complexity Low_complexity 1 41 0 744 157 0 0 chr12 45960234 45960349 -97826106 - FLAM_C SINE Alu -28 115 1 231 306 143 25 chr12 45961440 45961636 -97824819 + L2 LINE L2 2409 2627 -687 257 377 8 16 chr12 45963247 45963369 -97823086 - HERV16 LTR ERVL -3702 1294 1174 198 0 0 0 chr12 45963377 45963399 -97823056 + (A)n Simple_repeat Simple_repeat 1 22 0 284 276 112 22 chr12 45964188 45964322 -97822133 - MIR SINE MIR -110 152 7 262 369 175 0 chr12 45964581 45964787 -97821668 + L3 LINE CR1 912 1153 -424 254 234 0 0 chr12 45964983 45965030 -97821425 - MLT1L LTR MaLR -228 387 341 256 375 61 20 chr12 45965077 45965322 -97821133 + L3 LINE CR1 1314 1568 -9 25 0 0 0 chr12 45965465 45965490 -97820965 + AT_rich Low_complexity Low_complexity 1 25 0 470 318 107 75 chr12 45965969 45966435 -97820020 - L2 LINE L2 -941 2373 1893 1971 164 3 37 chr12 45967722 45968100 -97818355 + MLT1A1 LTR MaLR 1 365 0 3181 178 48 31 chr12 45968105 45968752 -97817703 + MLT1A1-int LTR MaLR 2 659 -1076 3386 213 31 131 chr12 45968804 45970018 -97816437 + MLT1A1-int LTR MaLR 643 1735 0 1270 185 13 1 chr12 45970022 45970338 -97816117 + MLT1A1 LTR MaLR 5 365 0 269 238 162 48 chr12 45970339 45970444 -97816011 + MIR SINE MIR 74 190 -72 12005 110 10 29 chr12 45970598 45972856 -97813599 + L1PA7 LINE L1 10 2228 -4233 2707 109 2 0 chr12 45972847 45973268 -97813187 + L1PA7 LINE L1 3390 3811 -2650 * 6546 63 17 6 chr12 45973268 45974618 -97811837 + L1PA7 LINE L1 5110 6467 -2 856 247 76 59 chr12 45975815 45976318 -97810137 - L1ME1 LINE L1 -5 6230 994 29 60 0 0 chr12 45976377 45976427 -97810028 + AT_rich Low_complexity Low_complexity 1 50 0 3859 187 17 22 chr12 45976467 45977273 -97809182 - L1MB7 LINE L1 -61 6621 5820 1122 227 8 0 chr12 45977274 45977525 -97808930 - AluJo SINE Alu -6 306 54 5485 231 94 7 chr12 45977627 45979286 -97807169 - L1MB7 LINE L1 -894 5750 3947 4238 224 30 39 chr12 45979263 45980778 -97805677 - L1MB7 LINE L1 -5463 1362 1 * 868 271 29 17 chr12 45980767 45981007 -97805448 - L1ME1 LINE L1 -6119 277 35 * 222 37 0 0 chr12 45981255 45981282 -97805173 + (CA)n Simple_repeat Simple_repeat 2 28 0 283 304 146 32 chr12 45981286 45981444 -97805011 + MIR SINE MIR 33 208 -54 21 0 0 0 chr12 45981846 45981867 -97804588 + AT_rich Low_complexity Low_complexity 1 21 0 279 319 26 35 chr12 45981888 45982001 -97804454 + L2 LINE L2 3201 3312 -1 2362 94 0 3 chr12 45983878 45984186 -97802269 - AluSq SINE Alu -6 307 1 216 328 60 0 chr12 45984688 45984755 -97801700 + L2 LINE L2 3172 3242 -30 22 0 0 0 chr12 45984785 45984807 -97801648 + AT_rich Low_complexity Low_complexity 1 22 0 341 258 211 0 chr12 45984887 45985031 -97801424 + MIR SINE MIR 2 179 -29 2760 13 0 0 chr12 45985096 45985404 -97801051 + AluYa5 SINE Alu 1 308 -3 1466 96 55 9 chr12 45985449 45985669 -97800786 - MER30 DNA MER1_type 0 230 1 3546 286 93 17 chr12 45985874 45987225 -97799230 + L2 LINE L2 1078 2531 -783 1144 284 60 12 chr12 45987255 45987748 -97798707 + L2 LINE L2 2785 3308 -5 627 353 142 23 chr12 45987839 45988534 -97797921 - L2 LINE L2 -348 2966 2189 619 276 39 25 chr12 45988629 45988832 -97797623 + MER63A DNA MER1_type 2 207 -3 188 320 97 0 chr12 45988986 45989089 -97797366 + L3 LINE CR1 1447 1559 -18 31 26 0 0 chr12 45989568 45989606 -97796849 + AT_rich Low_complexity Low_complexity 1 38 0 511 306 221 42 chr12 45990386 45991163 -97795292 + L3 LINE CR1 484 1399 -178 2980 233 65 33 chr12 45991217 45992174 -97794281 - L1M4b LINE L1 -1828 5129 4143 1537 253 106 2 chr12 45992171 45992745 -97793710 - L1M4b LINE L1 -3049 3908 3275 * 756 280 36 18 chr12 45993241 45993466 -97792989 + MIR SINE MIR 34 262 0 231 61 0 0 chr12 45994883 45994916 -97791539 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 812 273 99 33 chr12 45995051 45995915 -97790540 - L1M4b LINE L1 -3604 3353 2477 5550 241 42 59 chr12 45996033 45998400 -97788055 - L1M4b LINE L1 -4490 2469 159 1215 150 14 12 chr12 45998414 45998602 -97787853 - MLT1D LTR MaLR -57 448 279 663 75 0 0 chr12 45998602 45998696 -97787759 - L1PA4 LINE L1 0 6155 6062 1215 150 14 12 chr12 45998696 45998718 -97787737 - MLT1D LTR MaLR -226 279 259 780 190 38 13 chr12 45998748 45998906 -97787549 - L1M4b LINE L1 -6688 171 10 28 0 0 0 chr12 45999582 45999610 -97786845 + AT_rich Low_complexity Low_complexity 1 28 0 299 294 91 23 chr12 46000590 46000940 -97785515 - L1M4 LINE L1 -3458 2688 2315 1567 248 90 46 chr12 46000940 46000973 -97785482 - L1 LINE L1 -763 5383 5353 2260 109 0 0 chr12 46000973 46001276 -97785179 - AluSx SINE Alu -9 303 1 1567 248 90 46 chr12 46001276 46002010 -97784445 - L1 LINE L1 -793 5353 4571 2643 24 3 0 chr12 46002585 46002883 -97783572 - AluY SINE Alu -9 302 4 319 188 159 0 chr12 46003759 46003828 -97782627 - L2 LINE L2 0 3313 3234 23 78 0 0 chr12 46005648 46005699 -97780756 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr12 46008007 46008043 -97778412 + AT_rich Low_complexity Low_complexity 1 36 0 2220 114 0 3 chr12 46008867 46009166 -97777289 - AluSq SINE Alu -13 300 3 324 265 109 55 chr12 46009482 46009720 -97776735 - L1P1 LINE L1 -558 5597 5347 190 365 45 51 chr12 46009845 46010023 -97776432 + L2 LINE L2 1288 1464 -1850 264 341 122 8 chr12 46010222 46010468 -97775987 + L2 LINE L2 1464 1737 -1577 325 212 35 24 chr12 46010475 46010560 -97775895 - L1MEc LINE L1 -3504 2711 2626 266 241 60 0 chr12 46010623 46010706 -97775749 - L1MEc LINE L1 -4320 2076 1989 865 196 0 0 chr12 46010774 46010917 -97775538 + FRAM SINE Alu 1 139 -37 189 74 0 0 chr12 46010924 46010951 -97775504 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 291 333 48 0 chr12 46011837 46011942 -97774513 + MIR3 SINE MIR 86 195 -13 240 307 20 81 chr12 46012150 46012314 -97774141 + MIR SINE MIR 42 195 -67 458 255 182 26 chr12 46012413 46012605 -97773850 + MIR SINE MIR 41 262 0 357 347 42 21 chr12 46013397 46013590 -97772865 - MER117 DNA MER1_type 0 197 1 206 283 152 20 chr12 46013675 46013774 -97772681 - L2 LINE L2 -7 3265 3154 649 274 61 80 chr12 46014025 46014437 -97772018 + LTR67 LTR ERVL 13 416 -141 244 120 54 54 chr12 46014447 46014539 -97771916 + (TA)n Simple_repeat Simple_repeat 1 92 0 2319 114 50 8 chr12 46015237 46015597 -97770858 + THE1C LTR MaLR 1 375 0 10392 123 10 29 chr12 46015597 46017208 -97769247 + THE1C-int LTR MaLR 1 1580 0 2603 122 3 8 chr12 46017208 46017585 -97768870 + THE1C LTR MaLR 1 375 0 1750 195 0 3 chr12 46017638 46017946 -97768509 + AluJo SINE Alu 1 307 -5 202 300 71 0 chr12 46018004 46018074 -97768381 - L2 LINE L2 -56 3257 3183 4196 116 13 2 chr12 46019241 46019869 -97766586 - MER41B LTR ERV1 0 635 1 916 305 39 36 chr12 46020173 46020530 -97765925 + HERV16 LTR ERVL 544 901 -4095 3319 314 49 37 chr12 46020678 46022239 -97764216 + HERV16 LTR ERVL 1725 3309 -1900 251 372 34 34 chr12 46023140 46023374 -97763081 - MIR SINE MIR -9 253 20 333 160 93 27 chr12 46023516 46023591 -97762864 + MER5A DNA MER1_type 27 106 -83 338 200 50 0 chr12 46023659 46023739 -97762716 - MER58 DNA MER1_type -1 2419 131 316 313 60 18 chr12 46024137 46024303 -97762152 - MER5A DNA MER1_type -12 177 5 1678 177 100 21 chr12 46024513 46024994 -97761461 - Charlie1b DNA MER1_type -4 519 1 1485 176 98 17 chr12 46026311 46026607 -97759848 - MER2 DNA MER2_type -25 320 1 2233 107 0 3 chr12 46026649 46026949 -97759506 - AluSx SINE Alu -13 299 1 856 181 7 0 chr12 46026964 46027113 -97759342 - FRAM SINE Alu -16 150 1 195 355 0 0 chr12 46027284 46027360 -97759095 - MIR SINE MIR -58 204 129 397 265 11 0 chr12 46027386 46027493 -97758962 - L1ME2 LINE L1 -4 6162 6051 290 303 61 10 chr12 46027531 46027630 -97758825 - MIR SINE MIR -156 106 3 282 368 101 34 chr12 46029002 46029477 -97756978 - L2 LINE L2 -352 2962 2456 791 200 0 29 chr12 46029589 46029764 -97756691 + L1P LINE L1 3499 3668 -2478 4430 205 45 1 chr12 46030763 46031563 -97754892 + L1PA13 LINE L1 1 835 -5952 5297 160 49 7 chr12 46031567 46032522 -97753933 + L1PA13 LINE L1 4135 5129 -1668 945 70 0 0 chr12 46032532 46032674 -97753781 + AluY SINE Alu 167 308 0 6169 97 9 2 chr12 46032675 46034328 -97752127 + L1PA13 LINE L1 5131 6795 -19 386 192 14 0 chr12 46035771 46035844 -97750611 + MER116 DNA Mariner 1 74 -6 321 323 21 0 chr12 46036038 46036134 -97750321 + MIR SINE MIR 15 112 -150 2320 176 29 5 chr12 46036453 46036867 -97749588 - MSTB LTR MaLR -2 424 1 22 0 0 0 chr12 46037002 46037024 -97749431 + AT_rich Low_complexity Low_complexity 1 22 0 2019 262 48 57 chr12 46037961 46038845 -97747610 + L1ME LINE L1 20 895 -5175 519 232 92 19 chr12 46038817 46039024 -97747431 + L1M4 LINE L1 4389 4610 -1470 * 213 39 0 0 chr12 46039290 46039316 -97747139 + (TG)n Simple_repeat Simple_repeat 1 26 0 243 79 0 0 chr12 46039316 46039354 -97747101 + (GA)n Simple_repeat Simple_repeat 2 39 0 2503 119 0 14 chr12 46039434 46039803 -97746652 + THE1B LTR MaLR 1 364 0 642 181 60 0 chr12 46040217 46040333 -97746122 + FLAM_A SINE Alu 1 123 -10 282 300 169 19 chr12 46040943 46041103 -97745352 + MER5A DNA MER1_type 1 184 -5 875 184 27 16 chr12 46041275 46041460 -97744995 - MER53 DNA DNA 0 189 3 274 315 87 0 chr12 46041480 46041572 -97744883 + MIR SINE MIR 46 145 -117 2353 82 3 0 chr12 46042041 46042344 -97744111 - AluSp SINE Alu -9 304 1 460 101 25 38 chr12 46042367 46042446 -97744009 - MADE1 DNA Mariner -2 78 1 21 0 0 0 chr12 46043559 46043580 -97742875 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr12 46045926 46045960 -97740495 + AT_rich Low_complexity Low_complexity 1 34 0 573 161 77 39 chr12 46046600 46046730 -97739725 + AluJb SINE Alu 177 311 -1 2303 208 43 12 chr12 46046880 46047390 -97739065 - MER90 LTR ERV1 0 614 89 29 98 0 0 chr12 46047578 46047670 -97738785 + AT_rich Low_complexity Low_complexity 1 92 0 1568 139 163 92 chr12 46048811 46048859 -97737596 - MER4A LTR ERV1 0 664 621 2199 108 0 22 chr12 46048859 46049175 -97737280 - AluSx SINE Alu -1 311 3 1568 139 163 92 chr12 46049175 46049507 -97736948 - MER4A LTR ERV1 -43 621 257 622 131 0 10 chr12 46049503 46049602 -97736853 - MER4A LTR ERV1 -566 98 1 * 1300 226 53 60 chr12 46049818 46049866 -97736589 - MER31B LTR ERV1 0 466 419 3914 121 53 2 chr12 46049866 46050487 -97735968 - MER39B LTR ERV1 0 653 1 1300 226 53 60 chr12 46050487 46050907 -97735548 - MER31B LTR ERV1 -47 419 1 665 275 66 24 chr12 46051578 46051789 -97734666 + MIR SINE MIR 9 228 -34 192 313 16 0 chr12 46051837 46051901 -97734554 + L2 LINE L2 3245 3309 -4 1972 94 41 38 chr12 46052332 46052557 -97733898 + L1P4 LINE L1 5294 5522 -643 2050 131 3 0 chr12 46052557 46052854 -97733601 - AluSx SINE Alu -14 298 1 1972 94 41 38 chr12 46052854 46052946 -97733509 + L1P4 LINE L1 5522 5612 -553 197 62 0 31 chr12 46053048 46053080 -97733375 + (TCCCC)n Simple_repeat Simple_repeat 2 32 0 933 110 6 28 chr12 46053116 46053157 -97733298 + (TTTC)n Simple_repeat Simple_repeat 1 218 0 933 110 6 28 chr12 46053157 46053339 -97733116 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1829 154 0 10 chr12 46053373 46053666 -97732789 - AluJb SINE Alu 0 312 23 837 269 125 31 chr12 46053688 46054276 -97732179 - L2 LINE L2 0 3313 2660 2638 85 3 35 chr12 46054312 46054535 -97731920 + THE1B LTR MaLR 1 209 -155 2297 81 0 10 chr12 46054535 46054831 -97731624 - AluY SINE Alu -18 293 1 2638 85 3 35 chr12 46054831 46054983 -97731472 + THE1B LTR MaLR 209 364 0 1018 238 114 22 chr12 46055429 46055744 -97730711 + MER2 DNA MER2_type 1 344 -1 714 282 87 10 chr12 46056167 46056491 -97729964 - MER57B LTR ERV1 -82 321 1 319 296 49 21 chr12 46056562 46056704 -97729751 - MIR SINE MIR -56 206 61 260 219 55 41 chr12 46056712 46056785 -97729670 - MIR SINE MIR -26 236 163 252 211 35 0 chr12 46056815 46056872 -97729583 - MIR SINE MIR -193 69 11 2552 96 16 14 chr12 46056949 46057312 -97729143 - THE1B LTR MaLR 0 364 1 466 177 26 9 chr12 46058384 46058497 -97727958 + CT-rich Low_complexity Low_complexity 4 118 0 1599 193 6 29 chr12 46058499 46058815 -97727640 - AluJo SINE Alu -3 309 1 840 275 8 46 chr12 46059087 46059327 -97727128 + MIR SINE MIR 11 241 -21 328 321 47 51 chr12 46059431 46059646 -97726809 - MIR SINE MIR -6 256 43 660 299 99 0 chr12 46059708 46059929 -97726526 + MIR SINE MIR 1 243 -19 2323 84 0 0 chr12 46060415 46060733 -97725722 + AluSx SINE Alu 1 318 0 2096 169 0 6 chr12 46060817 46061100 -97725355 - MER7A DNA MER2_type -2693 345 65 3893 110 29 2 chr12 46061100 46061691 -97724764 - L1PA13 LINE L1 -6 6157 5551 2096 169 0 6 chr12 46061691 46061755 -97724700 - MER7A DNA MER2_type -2973 65 2 214 281 18 35 chr12 46062630 46062687 -97723768 - L2 LINE L2 -68 3204 3149 21 57 0 0 chr12 46065211 46065246 -97721209 + AT_rich Low_complexity Low_complexity 1 35 0 362 258 39 23 chr12 46065395 46065523 -97720932 + L2 LINE L2 2350 2479 -835 455 328 50 42 chr12 46065543 46065903 -97720552 + L2 LINE L2 2947 3309 -4 239 252 70 78 chr12 46066137 46066252 -97720203 + MIR SINE MIR 37 150 -112 506 104 13 0 chr12 46066344 46066421 -97720034 + MADE1 DNA Mariner 3 80 0 565 75 0 12 chr12 46066841 46066921 -97719534 - MADE1 DNA Mariner 0 80 2 204 211 0 0 chr12 46067294 46067332 -97719123 + (TG)n Simple_repeat Simple_repeat 1 38 0 272 253 36 0 chr12 46067683 46067712 -97718743 + MER3 DNA MER1_type 18 49 -160 599 211 103 22 chr12 46067712 46067897 -97718558 - MER3 DNA MER1_type 0 209 10 455 387 16 5 chr12 46068196 46068387 -97718068 + L2 LINE L2 3080 3272 0 182 387 21 11 chr12 46068421 46068514 -97717941 + MIR SINE MIR 149 242 -20 255 103 0 0 chr12 46070028 46070067 -97716388 + (CA)n Simple_repeat Simple_repeat 1 39 0 2175 105 0 0 chr12 46071461 46071747 -97714708 - AluSc SINE Alu -10 299 14 200 261 115 31 chr12 46071868 46071998 -97714457 + MIR SINE MIR 72 212 -50 935 186 0 6 chr12 46072022 46072178 -97714277 - AluJo SINE Alu -23 289 135 862 126 0 8 chr12 46072233 46072360 -97714095 - AluJo SINE Alu -176 126 1 267 293 12 12 chr12 46074156 46074238 -97712217 + L2 LINE L2 3232 3313 0 424 270 131 22 chr12 46074599 46074736 -97711719 + MIR SINE MIR 32 183 -79 1923 174 141 2 chr12 46077571 46078048 -97708407 - Charlie1 DNA MER1_type -6 2755 2213 1617 132 34 70 chr12 46078049 46078157 -97708298 + MER1B DNA MER1_type 1 111 -2601 2062 116 3 0 chr12 46078157 46078441 -97708014 - AluSq SINE Alu -19 294 10 1617 132 34 70 chr12 46078441 46078727 -97707728 + MER1B DNA MER1_type 111 339 0 560 149 18 9 chr12 46078751 46078865 -97707590 - Charlie1 DNA MER1_type -567 2194 2080 427 278 62 0 chr12 46078869 46079013 -97707442 - Charlie1 DNA MER1_type -2608 153 1 226 326 0 65 chr12 46079172 46079264 -97707191 + L2 LINE L2 2993 3078 -194 2392 69 3 0 chr12 46079291 46079581 -97706874 - AluSg SINE Alu -19 291 1 256 298 66 41 chr12 46080057 46080178 -97706277 + L2 LINE L2 3139 3262 -10 644 285 81 56 chr12 46080426 46080836 -97705619 - MLT1K LTR MaLR 0 588 169 253 242 16 16 chr12 46081162 46081224 -97705231 + MIR SINE MIR 66 127 -135 588 238 27 70 chr12 46081236 46081421 -97705034 + MER5B DNA MER1_type 1 177 -1 1955 194 26 53 chr12 46081509 46081978 -97704477 + MER74A LTR ERVL 1 456 -102 1833 90 4 4 chr12 46081999 46082255 -97704200 - L1PA8 LINE L1 -8 6164 5909 7932 100 19 36 chr12 46082255 46083819 -97702636 - L1PA8 LINE L1 -510 5621 4097 402 214 53 30 chr12 46083819 46083950 -97702505 + MER74A LTR ERVL 425 558 0 503 296 24 6 chr12 46084662 46084831 -97701624 - MIR SINE MIR -25 237 66 457 242 55 0 chr12 46084954 46085077 -97701378 - MER112 DNA MER1_type -6 254 125 307 141 0 174 chr12 46085077 46085169 -97701286 + MADE1 DNA Mariner 1 76 -4 197 196 18 0 chr12 46085220 46085276 -97701179 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 2131 121 7 0 chr12 46085329 46085635 -97700820 + AluSx SINE Alu 1 308 -4 182 283 0 0 chr12 46086147 46086193 -97700262 - L2 LINE L2 -1306 2008 1963 1668 163 51 4 chr12 46087513 46087789 -97698666 - AluJo SINE Alu -20 292 4 1111 169 45 0 chr12 46088532 46088733 -97697722 + MER2 DNA MER2_type 1 210 -135 2057 89 4 4 chr12 46088951 46089220 -97697235 - AluSx SINE Alu -5 307 39 24 0 0 0 chr12 46089742 46089766 -97696689 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr12 46091007 46091052 -97695403 + AT_rich Low_complexity Low_complexity 1 45 0 4331 235 90 19 chr12 46091219 46091323 -97695132 - L1ME1 LINE L1 -5 6161 6066 1891 146 35 35 chr12 46091323 46091692 -97694763 + THE1C LTR MaLR 3 371 -4 4331 235 90 19 chr12 46091692 46093976 -97692479 - L1ME1 LINE L1 -100 6066 3609 688 144 8 8 chr12 46094442 46094567 -97691888 - L1MA3 LINE L1 -6 6299 6175 2015 141 0 3 chr12 46094964 46095277 -97691178 + AluSx SINE Alu 1 312 0 525 247 164 11 chr12 46095548 46095835 -97690620 - L1MC5 LINE L1 -71 7890 7560 2918 13 0 0 chr12 46097472 46097790 -97688665 - AluYb8 SINE Alu 0 318 1 248 330 19 38 chr12 46098968 46099074 -97687381 - L2 LINE L2 -497 2817 2714 293 319 58 58 chr12 46099708 46099934 -97686521 + MIR SINE MIR 34 259 -3 36 40 0 0 chr12 46099982 46100032 -97686423 + AT_rich Low_complexity Low_complexity 1 50 0 1404 207 38 54 chr12 46101148 46101602 -97684853 - MER39 LTR ERV1 0 682 260 1304 252 48 44 chr12 46104072 46104485 -97681970 - MLT1D LTR MaLR 0 505 91 332 204 107 48 chr12 46104521 46104624 -97681831 - MLT1D LTR MaLR -396 109 1 494 300 49 29 chr12 46104880 46105123 -97681332 + ERVL LTR ERVL 2131 2378 -3386 2198 75 0 25 chr12 46105133 46105445 -97681010 + AluY SINE Alu 9 313 0 316 194 15 0 chr12 46105892 46105959 -97680496 - MER58 DNA MER1_type -26 2394 2327 195 162 0 0 chr12 46106399 46106436 -97680019 + A-rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr12 46106813 46106849 -97679606 + AT_rich Low_complexity Low_complexity 1 36 0 1679 346 78 17 chr12 46107421 46108342 -97678113 + ERVL LTR ERVL 4151 5127 -637 248 249 12 24 chr12 46108541 46108708 -97677747 + (TATATG)n Simple_repeat Simple_repeat 1 165 0 402 21 0 0 chr12 46108772 46108819 -97677636 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2730 81 13 0 chr12 46108819 46109169 -97677286 - L1PB1 LINE L1 -11 6140 5783 465 19 0 0 chr12 46109169 46109223 -97677232 + (TA)n Simple_repeat Simple_repeat 1 54 0 2730 81 13 0 chr12 46109223 46109244 -97677211 - L1PB1 LINE L1 -368 5783 5764 24 0 0 0 chr12 46109479 46109503 -97676952 + AT_rich Low_complexity Low_complexity 1 24 0 267 304 24 102 chr12 46109641 46109973 -97676482 + LTR67 LTR ERVL 218 523 -34 342 0 0 0 chr12 46111048 46111086 -97675369 + (CA)n Simple_repeat Simple_repeat 2 39 0 377 309 94 20 chr12 46111779 46111955 -97674500 - MIR SINE MIR -73 189 2 22 0 0 0 chr12 46112006 46112028 -97674427 + AT_rich Low_complexity Low_complexity 1 22 0 471 319 43 22 chr12 46112136 46112321 -97674134 - MIR SINE MIR -73 189 1 1507 63 0 48 chr12 46113740 46113946 -97672509 + AluY SINE Alu 104 299 -12 2214 74 23 27 chr12 46115171 46115470 -97670985 - AluSp SINE Alu -15 298 1 261 229 79 57 chr12 46116007 46116147 -97670308 - L1MEd LINE L1 -5306 813 671 233 261 97 52 chr12 46116335 46116469 -97669986 - L1MEd LINE L1 -5960 159 20 257 288 25 56 chr12 46116576 46116736 -97669719 + L1 LINE L1 4903 5057 -1089 288 150 50 0 chr12 46116766 46116826 -97669629 + L1ME3A LINE L1 5889 5951 -219 25 31 0 0 chr12 46117012 46117044 -97669411 + AT_rich Low_complexity Low_complexity 1 32 0 291 240 104 52 chr12 46117589 46117685 -97668770 + L2 LINE L2 3212 3312 -1 356 314 74 37 chr12 46117718 46117989 -97668466 - L2 LINE L2 -1563 1751 1471 2256 135 25 0 chr12 46118173 46118528 -97667927 + THE1B LTR MaLR 1 364 0 659 188 94 6 chr12 46119831 46119991 -97666464 + MER89 LTR ERV1 1 174 -385 1924 205 60 14 chr12 46121260 46121675 -97664780 + MER89 LTR ERV1 126 559 0 450 330 87 53 chr12 46121699 46122057 -97664398 + L2 LINE L2 2893 3262 -10 489 322 48 18 chr12 46122552 46122779 -97663676 - MIR SINE MIR -26 236 3 214 222 0 37 chr12 46123955 46124009 -97662446 + CT-rich Low_complexity Low_complexity 3 54 0 277 299 0 0 chr12 46124393 46124480 -97661975 - HsTC2 DNA Tc2 -1811 87 1 253 333 9 9 chr12 46124480 46124591 -97661864 + Charlie8 DNA MER1_type 115 225 -2192 189 214 0 0 chr12 46124602 46124644 -97661811 + CT-rich Low_complexity Low_complexity 4 45 0 298 354 8 8 chr12 46124648 46124775 -97661680 - L2 LINE L2 -198 3115 2989 233 345 163 5 chr12 46124784 46124987 -97661468 + L2 LINE L2 2046 2280 -1034 223 250 0 0 chr12 46125779 46125835 -97660620 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 42392 37 24 2 chr12 46125985 46132012 -97654443 - L1PA3 LINE L1 0 6155 1 422 306 140 6 chr12 46132181 46132338 -97654117 - MER5B DNA MER1_type 0 178 1 417 334 107 53 chr12 46132468 46133297 -97653158 - L2 LINE L2 -1252 2062 1189 246 32 0 0 chr12 46133304 46133335 -97653120 + (CA)n Simple_repeat Simple_repeat 2 32 0 1222 152 68 29 chr12 46133478 46133788 -97652667 - MER33 DNA MER1_type 0 324 3 658 135 27 0 chr12 46134038 46134149 -97652306 + L1MA4 LINE L1 5671 5784 -516 1556 87 50 0 chr12 46134149 46134368 -97652087 - LTR12 LTR ERV1 0 714 485 321 198 33 22 chr12 46134374 46134465 -97651990 - LTR30 LTR ERV1 -80 642 551 5495 142 163 26 chr12 46134465 46135599 -97650856 - pTR5 LTR ERV1 -406 2032 743 2952 129 32 6 chr12 46135599 46136095 -97650360 + L1MA4 LINE L1 5781 6289 -11 21 0 0 0 chr12 46137059 46137080 -97649375 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 46138041 46138074 -97648381 + AT_rich Low_complexity Low_complexity 1 33 0 407 297 39 45 chr12 46138834 46139218 -97647237 + L1MEd LINE L1 1024 1497 -993 326 276 18 65 chr12 46139561 46139731 -97646724 + MER103 DNA DNA 2 163 -3 586 265 8 0 chr12 46141033 46141165 -97645290 - MIR SINE MIR -111 151 19 227 154 0 19 chr12 46142086 46142138 -97644317 + GA-rich Low_complexity Low_complexity 3 53 0 278 297 50 20 chr12 46144831 46144932 -97641523 + MER5A DNA MER1_type 9 112 -77 22 35 0 0 chr12 46147513 46147542 -97638913 + AT_rich Low_complexity Low_complexity 1 29 0 220 250 0 0 chr12 46149379 46149419 -97637036 + L3b LINE CR1 1291 1330 -253 21 0 0 0 chr12 46149886 46149907 -97636548 + AT_rich Low_complexity Low_complexity 1 21 0 351 286 71 127 chr12 46151311 46151689 -97634766 - L2 LINE L2 -50 3222 2866 181 380 20 10 chr12 46151734 46151834 -97634621 + L3 LINE CR1 460 560 -1017 189 250 23 0 chr12 46151973 46152017 -97634438 - L2 LINE L2 -86 3227 3183 33 73 0 0 chr12 46152741 46152809 -97633646 + AT_rich Low_complexity Low_complexity 1 68 0 252 254 0 0 chr12 46152835 46152906 -97633549 + (TA)n Simple_repeat Simple_repeat 1 71 0 875 237 92 19 chr12 46153110 46153435 -97633020 - L1ME2 LINE L1 -10 6154 5806 1209 115 0 0 chr12 46153468 46153486 -97632969 - L1PB4 LINE L1 -201 5955 5938 1731 125 0 143 chr12 46153486 46153879 -97632576 - L1MA4A LINE L1 -366 5937 5601 2354 257 73 69 chr12 46153897 46154972 -97631483 - L1MCc LINE L1 -3381 3560 2491 216 0 0 0 chr12 46154972 46154996 -97631459 + (CA)n Simple_repeat Simple_repeat 1 24 0 2354 257 73 69 chr12 46154996 46156143 -97630312 - L1MCc LINE L1 -4450 2491 1130 1893 155 0 22 chr12 46156242 46156559 -97629896 - AluJb SINE Alu -2 310 1 268 251 43 101 chr12 46157004 46157211 -97629244 - L1MCc LINE L1 -5963 460 266 397 231 94 0 chr12 46157293 46157410 -97629045 - L1MCc LINE L1 -6285 138 11 383 294 10 0 chr12 46157897 46157999 -97628456 + MIR SINE MIR 89 191 -71 269 293 8 113 chr12 46158132 46158232 -97628223 - MIR SINE MIR -66 142 58 2201 57 3 108 chr12 46158232 46158567 -97627888 - AluY SINE Alu 0 311 12 269 293 8 113 chr12 46158567 46158599 -97627856 - MIR SINE MIR -150 58 24 264 344 53 0 chr12 46158736 46158867 -97627588 - L2 LINE L2 -1 3312 3175 591 243 126 5 chr12 46159292 46159506 -97626949 - MIR SINE MIR -10 252 13 324 267 18 0 chr12 46159714 46159879 -97626576 - L1MEc LINE L1 -2907 3222 3055 4801 173 36 4 chr12 46159924 46160985 -97625470 + L1MB2 LINE L1 5077 6169 -2 326 261 11 11 chr12 46161194 46161336 -97625119 + CT-rich Low_complexity Low_complexity 1 142 0 24 0 0 0 chr12 46161508 46161532 -97624923 + AT_rich Low_complexity Low_complexity 1 24 0 2381 87 0 0 chr12 46161567 46161876 -97624579 + AluY SINE Alu 1 309 -2 365 297 109 24 chr12 46162032 46162197 -97624258 - HAL1 LINE L1 -854 1653 1475 240 298 50 18 chr12 46162210 46162428 -97624027 - L1MEc LINE L1 -4923 1387 1163 513 246 67 116 chr12 46162439 46162768 -97623687 - L1MEc LINE L1 -5022 1097 785 258 271 47 24 chr12 46163301 46163386 -97623069 - L1MEc LINE L1 -6032 87 1 347 255 64 66 chr12 46163432 46163511 -97622944 - L1M4 LINE L1 -913 5233 5155 1587 196 3 17 chr12 46163511 46163807 -97622648 - AluJb SINE Alu -20 292 1 347 255 64 66 chr12 46163807 46164078 -97622377 - L1M4 LINE L1 -991 5155 4885 288 219 109 51 chr12 46164470 46164607 -97621848 - L1P5 LINE L1 -686 5465 5321 200 214 18 0 chr12 46164849 46164905 -97621550 + (TA)n Simple_repeat Simple_repeat 1 57 0 7334 164 7 2 chr12 46165029 46167337 -97619118 + L1PB1 LINE L1 3829 6148 -3 480 332 106 35 chr12 46168568 46168944 -97617511 - L2 LINE L2 0 3313 2911 2555 283 92 14 chr12 46169302 46169423 -97617032 + L2 LINE L2 24 134 -3180 1959 107 34 17 chr12 46169423 46169714 -97616741 + AluSq SINE Alu 1 296 -17 2555 283 92 14 chr12 46169714 46170190 -97616265 + L2 LINE L2 134 571 -2743 2232 110 75 20 chr12 46170190 46170535 -97615920 - THE1B LTR MaLR 0 364 1 2555 283 92 14 chr12 46170535 46170869 -97615586 + L2 LINE L2 571 1029 -2285 403 281 101 62 chr12 46170870 46171367 -97615088 + L1M4 LINE L1 2814 3369 -2777 628 309 98 30 chr12 46171527 46172187 -97614268 + L1M4 LINE L1 3437 4158 -1988 4910 35 19 0 chr12 46172187 46172779 -97613676 + L1PA5 LINE L1 5552 6154 0 628 309 98 30 chr12 46172779 46172885 -97613570 + L1M4 LINE L1 4158 4255 -1891 244 211 26 114 chr12 46173315 46173429 -97613026 + MLT1H LTR MaLR 444 547 -2 300 311 163 36 chr12 46174694 46174890 -97611565 - MIR SINE MIR -13 249 29 237 337 36 0 chr12 46174890 46174973 -97611482 - MIR SINE MIR -164 98 13 469 163 25 0 chr12 46175184 46175264 -97611191 + MLT1A2 LTR MaLR 1 82 -292 436 125 10 226 chr12 46175542 46175750 -97610705 + MER51C LTR ERV1 470 632 -2 * 1250 238 32 32 chr12 46175750 46176034 -97610421 + MLT1A2 LTR MaLR 66 349 -25 2795 84 0 11 chr12 46176034 46176413 -97610042 + THE1C LTR MaLR 1 375 0 10405 111 20 25 chr12 46176413 46178001 -97608454 + THE1C-int LTR MaLR 1 1580 0 2635 106 0 8 chr12 46178001 46178379 -97608076 + THE1C LTR MaLR 1 375 0 1250 238 32 32 chr12 46178379 46178399 -97608056 + MLT1A2 LTR MaLR 346 372 -2 604 217 25 25 chr12 46178554 46178711 -97607744 + MIR SINE MIR 105 261 -1 2415 81 3 0 chr12 46180312 46180610 -97605845 - AluY SINE Alu -7 304 6 23 78 0 0 chr12 46180829 46180880 -97605575 + AT_rich Low_complexity Low_complexity 1 51 0 443 167 0 13 chr12 46181086 46181164 -97605291 - Tigger5 DNA MER2_type 0 2323 2247 380 244 0 0 chr12 46181159 46181241 -97605214 + Tigger5 DNA MER2_type 2242 2323 0 * 508 167 0 0 chr12 46181241 46181315 -97605140 - Tigger5 DNA MER2_type -2249 74 1 2327 140 66 7 chr12 46181432 46181840 -97604615 - MSTB1 LTR MaLR 0 432 1 325 333 41 48 chr12 46183373 46183520 -97602935 - MIR3 SINE MIR -46 162 17 1022 243 55 101 chr12 46183572 46184136 -97602319 - MER34 LTR ERV1 -3 539 2 200 311 39 48 chr12 46184990 46185093 -97601362 + L2 LINE L2 3164 3265 -48 25 0 0 0 chr12 46185189 46185214 -97601241 + AT_rich Low_complexity Low_complexity 1 25 0 2063 200 23 8 chr12 46185326 46185716 -97600739 - MSTD LTR MaLR 0 396 1 351 0 0 0 chr12 46186262 46186301 -97600154 + (TG)n Simple_repeat Simple_repeat 2 40 0 204 68 45 23 chr12 46186313 46186357 -97600098 + (TA)n Simple_repeat Simple_repeat 2 46 0 1404 207 38 54 chr12 46187462 46187916 -97598539 + MER39 LTR ERV1 260 565 0 36 40 0 0 chr12 46189034 46189084 -97597371 + AT_rich Low_complexity Low_complexity 1 50 0 293 319 58 58 chr12 46189132 46189358 -97597097 - MIR SINE MIR -3 259 34 248 330 19 38 chr12 46189992 46190098 -97596357 + L2 LINE L2 2714 2817 -497 2248 62 14 3 chr12 46191276 46191564 -97594891 + AluSg SINE Alu 1 291 -19 226 326 0 65 chr12 46191591 46191683 -97594772 - L2 LINE L2 -194 3078 2993 427 278 62 0 chr12 46191842 46191986 -97594469 + Charlie1 DNA MER1_type 1 153 -2608 560 149 18 9 chr12 46191990 46192104 -97594351 + Charlie1 DNA MER1_type 2080 2194 -567 1617 138 36 73 chr12 46192128 46192414 -97594041 - MER1B DNA MER1_type -2373 339 111 1970 120 7 3 chr12 46192414 46192698 -97593757 + AluSq SINE Alu 10 294 -19 1617 138 36 73 chr12 46192698 46192806 -97593649 - MER1B DNA MER1_type -2601 111 1 1880 175 138 6 chr12 46192807 46193287 -97593168 + Charlie1 DNA MER1_type 2213 2755 -6 424 270 131 22 chr12 46196126 46196263 -97590192 - MIR SINE MIR -79 183 32 1476 309 87 10 chr12 46196568 46197054 -97589401 - L2 LINE L2 -2636 678 134 1959 107 34 17 chr12 46197054 46197345 -97589110 - AluSq SINE Alu -17 296 1 1476 309 87 10 chr12 46197345 46197466 -97588989 - L2 LINE L2 -3180 134 24 488 330 106 35 chr12 46197824 46198200 -97588255 + L2 LINE L2 2911 3313 0 7129 166 8 2 chr12 46199431 46201739 -97584716 - L1PB1 LINE L1 -3 6148 3829 200 214 18 0 chr12 46201863 46201919 -97584536 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 219 109 51 chr12 46202161 46202298 -97584157 + L1P5 LINE L1 5321 5465 -686 347 255 64 66 chr12 46202689 46202909 -97583546 + L1ME3A LINE L1 4885 5104 -1042 33 25 0 0 chr12 46202909 46202949 -97583506 + AT_rich Low_complexity Low_complexity 1 40 0 347 255 64 66 chr12 46202949 46202960 -97583495 + L1ME3A LINE L1 5104 5114 -1032 1587 196 3 17 chr12 46202960 46203256 -97583199 + AluJb SINE Alu 1 292 -20 347 255 64 66 chr12 46203256 46203335 -97583120 + L1ME3A LINE L1 5114 5233 -913 338 328 85 20 chr12 46203381 46203582 -97582873 + L1MEd LINE L1 1 214 -5905 360 274 90 64 chr12 46203998 46204733 -97581722 + L1MEd LINE L1 785 1580 -4730 1682 104 19 11 chr12 46204890 46205159 -97581296 - AluY SINE Alu -2 309 39 24 0 0 0 chr12 46205681 46205705 -97580750 + AT_rich Low_complexity Low_complexity 1 24 0 361 230 103 48 chr12 46207669 46207795 -97578660 - MIR3 SINE MIR -61 147 15 2168 77 20 27 chr12 46210361 46210661 -97575794 - AluSp SINE Alu -15 298 1 248 222 79 56 chr12 46211196 46211322 -97575133 - L1MEd LINE L1 -5306 813 685 1486 263 68 50 chr12 46213362 46213442 -97573013 + L1MEc LINE L1 646 723 -5673 2207 97 0 7 chr12 46213442 46213752 -97572703 + AluY SINE Alu 1 308 -3 1486 263 68 50 chr12 46213752 46214486 -97571969 + L1MEc LINE L1 723 1474 -4922 638 237 0 62 chr12 46214502 46214696 -97571759 + L1ME1 LINE L1 5941 6122 -44 1700 256 114 7 chr12 46214715 46215363 -97571092 + L1ME3A LINE L1 5425 6158 -7 1797 146 48 7 chr12 46216292 46216586 -97569869 + AluSx SINE Alu 1 306 -6 264 77 0 0 chr12 46218244 46218283 -97568172 + (CA)n Simple_repeat Simple_repeat 2 40 0 821 290 8 0 chr12 46218771 46219030 -97567425 + MIR SINE MIR 2 262 0 441 209 85 62 chr12 46219780 46219909 -97566546 - MIR SINE MIR -61 147 16 383 271 77 6 chr12 46220161 46220331 -97566124 - MER113 DNA MER1_type? -337 184 3 347 345 115 42 chr12 46221527 46221840 -97564615 - L1MEd LINE L1 -5735 384 49 2191 115 0 0 chr12 46222356 46222651 -97563804 + AluSx SINE Alu 1 295 -17 22 56 0 0 chr12 46222692 46222728 -97563727 + AT_rich Low_complexity Low_complexity 1 36 0 1215 223 4 16 chr12 46223168 46223410 -97563045 + MER8 DNA MER2_type 1 239 0 22 80 0 0 chr12 46223576 46223626 -97562829 + AT_rich Low_complexity Low_complexity 1 50 0 1613 136 11 17 chr12 46223666 46223953 -97562502 - L1MA7 LINE L1 -95 6196 5912 380 122 54 0 chr12 46223956 46224030 -97562425 + L1MA7 LINE L1 6210 6287 -4 2096 137 0 0 chr12 46224674 46224974 -97561481 - AluSg SINE Alu -10 300 1 2127 119 125 13 chr12 46225487 46225872 -97560583 - MSTA LTR MaLR 0 428 1 517 281 41 12 chr12 46226084 46226255 -97560200 + MER5B DNA MER1_type 1 176 -2 1088 206 116 4 chr12 46227084 46227360 -97559095 + MER5C DNA MER1_type 1 307 -17 1670 255 65 64 chr12 46227858 46228373 -97558082 + MLT1G LTR MaLR 1 519 -71 2338 147 44 5 chr12 46228373 46228782 -97557673 + MSTA LTR MaLR 4 428 0 1670 255 65 64 chr12 46228782 46228847 -97557608 + MLT1G LTR MaLR 519 582 -8 208 338 62 89 chr12 46228992 46229362 -97557093 + L2 LINE L2 2894 3253 -19 207 0 0 0 chr12 46229596 46229619 -97556836 + (CA)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr12 46229618 46229639 -97556816 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 * 835 242 0 57 chr12 46230421 46230648 -97555807 - L2 LINE L2 -649 2665 2452 271 294 163 26 chr12 46231042 46231195 -97555260 + MIR3 SINE MIR 10 183 -25 489 271 153 30 chr12 46231496 46231699 -97554756 - MIR SINE MIR -6 256 29 225 196 0 0 chr12 46232108 46232154 -97554301 + A-rich Low_complexity Low_complexity 1 46 0 540 99 40 10 chr12 46232188 46232289 -97554166 + CT-rich Low_complexity Low_complexity 3 106 0 1681 139 0 77 chr12 46233529 46233663 -97552792 + AluJo SINE Alu 2 145 -167 1622 162 19 16 chr12 46233663 46233972 -97552483 + AluSq SINE Alu 1 310 -3 1681 139 0 77 chr12 46233972 46234160 -97552295 + AluJo SINE Alu 145 299 -13 21 0 0 0 chr12 46235646 46235667 -97550788 + AT_rich Low_complexity Low_complexity 1 21 0 370 317 28 21 chr12 46235775 46235917 -97550538 + MIR SINE MIR 109 251 -11 237 169 0 0 chr12 46236521 46236580 -97549875 + CT-rich Low_complexity Low_complexity 2 60 0 25 0 0 0 chr12 46236855 46236880 -97549575 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr12 46237454 46237480 -97548975 + (CA)n Simple_repeat Simple_repeat 2 27 0 1268 254 130 32 chr12 46239226 46239694 -97546761 + MLT1H1 LTR MaLR 11 524 -31 224 301 36 0 chr12 46239806 46239889 -97546566 - L2 LINE L2 0 3272 3187 256 253 77 22 chr12 46239987 46240078 -97546377 + MER91C DNA MER1_type 20 115 -25 203 167 0 0 chr12 46240496 46240532 -97545923 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 777 275 135 11 chr12 46240817 46241173 -97545282 - MLT1L LTR MaLR -4 611 212 188 364 69 29 chr12 46242327 46242500 -97543955 + L2 LINE L2 2355 2534 -780 282 258 153 61 chr12 46242500 46242663 -97543792 + MER5B DNA MER1_type 1 178 0 442 276 30 25 chr12 46242850 46243049 -97543406 + L1ME3A LINE L1 5970 6169 -1 1543 203 25 22 chr12 46243488 46243852 -97542603 - MLT1A1 LTR MaLR 0 365 1 291 311 54 66 chr12 46244006 46244173 -97542282 + MIR3 SINE MIR 13 177 -31 2014 183 86 20 chr12 46244437 46244935 -97541520 - L1MB8 LINE L1 -6 6241 5711 1031 206 147 59 chr12 46244935 46245292 -97541163 + MER31B LTR ERV1 1 402 -64 2383 117 37 0 chr12 46245292 46245643 -97540812 - THE1B LTR MaLR 0 364 1 1031 206 147 59 chr12 46245643 46245707 -97540748 + MER31B LTR ERV1 402 459 -7 1420 176 43 81 chr12 46245711 46246055 -97540400 - L1MB8 LINE L1 -541 5712 5383 2095 109 16 3 chr12 46246055 46246359 -97540096 - AluY SINE Alu -3 308 1 1420 176 43 81 chr12 46246359 46246411 -97540044 - L1MB8 LINE L1 -870 5383 5331 1569 222 22 34 chr12 46246485 46246880 -97539575 - MLT1A1 LTR MaLR -4 404 28 4209 247 49 39 chr12 46246914 46248241 -97538214 - L1MB8 LINE L1 -2531 3684 2362 1919 157 3 10 chr12 46248241 46248547 -97537908 - AluSx SINE Alu -8 304 1 4209 247 49 39 chr12 46248547 46249093 -97537362 - L1MB8 LINE L1 -3853 2362 1823 25 0 0 0 chr12 46249102 46249127 -97537328 + AT_rich Low_complexity Low_complexity 1 25 0 270 236 78 140 chr12 46249138 46249274 -97537181 - L1M4b LINE L1 -4304 2834 2691 1550 158 82 18 chr12 46249274 46249553 -97536902 - AluJb SINE Alu -15 297 1 270 236 78 140 chr12 46249553 46249802 -97536653 - L1M4b LINE L1 -4447 2691 2473 1154 247 62 11 chr12 46250082 46250455 -97536000 - L1M4b LINE L1 -4610 2349 1958 4187 227 59 40 chr12 46250466 46251747 -97534708 - L1M4b LINE L1 -5029 1826 524 1723 280 40 2 chr12 46251759 46252205 -97534250 - L1M4b LINE L1 -6395 464 2 403 286 29 0 chr12 46252408 46252548 -97533907 + L1MEd LINE L1 3 146 -5973 632 284 57 83 chr12 46252594 46253052 -97533403 - MLT1J LTR MaLR -65 446 1 243 354 0 0 chr12 46253052 46253148 -97533307 + L1ME LINE L1 5502 5597 -573 414 333 51 6 chr12 46253272 46253449 -97533006 + MIR SINE MIR 2 186 -76 236 77 26 0 chr12 46254529 46254568 -97531887 + (TA)n Simple_repeat Simple_repeat 1 40 0 264 344 178 32 chr12 46254718 46255597 -97530858 + L2 LINE L2 1611 2617 -697 * 304 242 74 21 chr12 46255566 46255661 -97530794 + L2 LINE L2 3173 3272 0 511 300 60 57 chr12 46257025 46257375 -97529080 - MLT1J LTR MaLR -160 351 1 374 320 63 6 chr12 46257595 46257770 -97528685 + MIR SINE MIR 2 186 -76 24 0 0 0 chr12 46259537 46259561 -97526894 + AT_rich Low_complexity Low_complexity 1 24 0 283 301 118 13 chr12 46260398 46260551 -97525904 + MIR SINE MIR 92 260 -2 2028 174 60 24 chr12 46260880 46261293 -97525162 - MSTC LTR MaLR 0 428 1 188 326 12 35 chr12 46261675 46261761 -97524694 + L2 LINE L2 3185 3268 -4 229 118 0 176 chr12 46263375 46263460 -97522995 - MLT1K LTR MaLR -3 585 516 333 324 106 40 chr12 46265008 46265283 -97521172 - L2 LINE L2 -65 3207 2915 342 323 118 26 chr12 46265375 46265570 -97520885 - L2 LINE L2 -525 2789 2577 247 319 34 29 chr12 46265815 46266053 -97520402 + L1M4 LINE L1 3666 3904 -2242 30 27 0 0 chr12 46266070 46266107 -97520348 + AT_rich Low_complexity Low_complexity 1 37 0 342 336 85 51 chr12 46266350 46266645 -97519810 + L2 LINE L2 2999 3303 -10 226 309 116 24 chr12 46266662 46267034 -97519421 + L1M4 LINE L1 4039 4444 -1702 418 349 44 24 chr12 46267154 46267406 -97519049 + L2 LINE L2 1307 1563 -1751 702 339 117 40 chr12 46267426 46267541 -97518914 + L2 LINE L2 1717 1822 -1492 2121 134 3 0 chr12 46267541 46267840 -97518615 - AluSx SINE Alu -12 300 1 702 339 117 40 chr12 46267840 46268582 -97517873 + L2 LINE L2 1822 2640 -674 377 272 119 88 chr12 46268591 46269021 -97517434 + MLT1J LTR MaLR 19 461 -50 472 306 201 10 chr12 46269406 46269615 -97516840 + MIR SINE MIR 6 254 -8 214 315 11 54 chr12 46270493 46270585 -97515870 - L3b LINE CR1 -77 1506 1419 2226 106 7 0 chr12 46271019 46271322 -97515133 + AluSx SINE Alu 1 305 -7 232 303 53 0 chr12 46271383 46271459 -97514996 - MIR SINE MIR -34 228 149 2663 179 62 18 chr12 46271460 46271958 -97514497 + MLT2B1 LTR ERVL 1 520 0 11361 190 55 21 chr12 46271959 46274143 -97512312 + ERVL-B1 LTR ERVL 2 2269 -3495 2201 118 0 0 chr12 46274143 46274439 -97512016 + AluSx SINE Alu 1 296 -16 11361 190 55 21 chr12 46274439 46274580 -97511875 + ERVL-B1 LTR ERVL 2269 2404 -3360 1643 198 10 3 chr12 46274580 46274873 -97511582 + MLT2B1 LTR ERVL 226 520 0 296 311 48 10 chr12 46274887 46274990 -97511465 - MIR SINE MIR -130 132 26 235 316 51 0 chr12 46275248 46275327 -97511128 - MIR SINE MIR -107 155 73 272 339 46 30 chr12 46276223 46276459 -97509996 + L2 LINE L2 2767 3008 -264 378 345 28 0 chr12 46276726 46276868 -97509587 - MIR SINE MIR -60 202 57 414 100 0 0 chr12 46276872 46276932 -97509523 + (CTATT)n Simple_repeat Simple_repeat 1 60 0 587 174 0 0 chr12 46276932 46277030 -97509425 - FRAM SINE Alu -26 150 53 213 225 0 0 chr12 46277197 46277237 -97509218 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr12 46277311 46277333 -97509122 + AT_rich Low_complexity Low_complexity 1 22 0 629 332 40 16 chr12 46277544 46277791 -97508664 + L3b LINE CR1 1113 1365 -218 207 0 0 0 chr12 46279342 46279365 -97507090 + (T)n Simple_repeat Simple_repeat 1 23 0 497 83 52 0 chr12 46280021 46280117 -97506338 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 616 352 71 43 chr12 46280676 46281255 -97505200 - L2 LINE L2 -556 2758 2164 2182 100 3 23 chr12 46281301 46281600 -97504855 + AluSx SINE Alu 1 293 -19 183 188 0 0 chr12 46283566 46283614 -97502841 + T-rich Low_complexity Low_complexity 1 48 0 215 340 50 30 chr12 46283836 46283936 -97502519 - L2 LINE L2 -4 3309 3208 302 245 0 11 chr12 46284194 46284288 -97502167 + GA-rich Low_complexity Low_complexity 2 94 0 285 123 18 0 chr12 46287274 46287331 -97499124 - Charlie7 DNA MER1_type -134 2478 2421 * 1113 300 99 11 chr12 46287324 46287870 -97498585 - Charlie7 DNA MER1_type -1888 724 131 283 175 0 16 chr12 46287877 46287940 -97498515 + L1ME3A LINE L1 5182 5243 -903 1200 149 29 36 chr12 46287952 46288313 -97498142 - MSTB1 LTR MaLR -1 431 3 2455 253 65 24 chr12 46288321 46289176 -97497279 + L1ME3A LINE L1 5269 6156 -14 230 328 15 15 chr12 46289196 46289330 -97497125 - Charlie7 DNA MER1_type -2478 134 1 27 49 0 0 chr12 46289981 46290022 -97496433 + AT_rich Low_complexity Low_complexity 1 41 0 357 309 114 8 chr12 46290942 46291065 -97495390 - L2 LINE L2 -20 3252 3117 186 103 0 0 chr12 46293556 46293585 -97492870 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 488 392 48 39 chr12 46293612 46294028 -97492427 - L2 LINE L2 -49 3223 2804 297 253 0 55 chr12 46294141 46294232 -97492223 + MIR SINE MIR 117 202 -60 29 28 0 0 chr12 46295213 46295249 -97491206 + AT_rich Low_complexity Low_complexity 1 36 0 407 291 64 1 chr12 46295720 46295880 -97490575 - MLT1J2 LTR MaLR -274 173 3 294 210 100 10 chr12 46297030 46297130 -97489325 + L2 LINE L2 2948 3056 -216 14690 136 24 2 chr12 46297173 46299484 -97486971 - Tigger1 DNA MER2_type 0 2418 57 1683 139 27 57 chr12 46299548 46299893 -97486562 + AluJb SINE Alu 1 336 0 246 241 17 0 chr12 46299895 46299953 -97486502 - Tigger1 DNA MER2_type -2359 59 1 186 347 69 14 chr12 46300123 46300195 -97486260 - L2 LINE L2 -76 3196 3121 5600 225 51 12 chr12 46300580 46302187 -97484268 + L1MB3 LINE L1 2883 4552 -1594 3987 199 31 35 chr12 46302180 46303352 -97483103 + L1MB3 LINE L1 5028 6176 -7 * 223 388 7 27 chr12 46303368 46303515 -97482940 - L2 LINE L2 -571 2743 2600 29 0 0 0 chr12 46303773 46303802 -97482653 + AT_rich Low_complexity Low_complexity 1 29 0 2231 134 29 38 chr12 46304087 46304506 -97481949 - L1MC1 LINE L1 -19 6314 5900 2276 147 11 3 chr12 46304507 46304868 -97481587 - THE1B LTR MaLR 0 364 1 9868 113 47 31 chr12 46304868 46306423 -97480032 - THE1B-int LTR MaLR 0 1580 1 2564 110 3 6 chr12 46306423 46306788 -97479667 - THE1B LTR MaLR 0 364 1 3308 168 49 5 chr12 46306788 46307561 -97478894 - L1MC1 LINE L1 -430 5903 5096 231 88 0 0 chr12 46307660 46307694 -97478761 + (TC)n Simple_repeat Simple_repeat 1 34 0 316 264 118 42 chr12 46307865 46308009 -97478446 - MLT1J2 LTR MaLR -26 424 270 1826 170 109 3 chr12 46308624 46308982 -97477473 + MSTD LTR MaLR 1 396 0 269 284 199 5 chr12 46310503 46310704 -97475751 - L2 LINE L2 -1212 2102 1863 3726 158 41 22 chr12 46313051 46313786 -97472669 - L1MC1 LINE L1 0 6333 5585 613 192 0 23 chr12 46313791 46313921 -97472534 - L1MC1 LINE L1 -2630 5412 5286 1986 218 82 18 chr12 46314085 46314598 -97471857 - LTR38 LTR ERV1 -10 546 1 235 227 30 45 chr12 46315494 46315560 -97470895 + MER91A DNA MER1_type 123 187 -9 230 200 200 0 chr12 46316130 46316190 -97470265 - L2 LINE L2 -556 2758 2687 1965 164 3 0 chr12 46316190 46316501 -97469954 + AluJb SINE Alu 1 312 0 519 319 157 30 chr12 46316631 46317242 -97469213 - L2 LINE L2 -681 2633 1945 512 261 23 45 chr12 46318890 46319066 -97467389 - L2 LINE L2 0 3313 3142 214 291 205 0 chr12 46320552 46320669 -97465786 + MIR SINE MIR 41 181 -81 2307 183 9 14 chr12 46322493 46322925 -97463530 + MLT2C2 LTR ERVL 1 430 -34 268 293 91 0 chr12 46322982 46323081 -97463374 - MER117 DNA MER1_type -87 110 3 353 19 0 57 chr12 46323110 46323163 -97463292 + L1PA3 LINE L1 6103 6152 -3 2180 119 16 0 chr12 46323241 46323544 -97462911 - AluSq SINE Alu 0 313 6 481 341 102 52 chr12 46323920 46324760 -97461695 + L2 LINE L2 2378 3257 -15 23 33 0 0 chr12 46325011 46325041 -97461414 + AT_rich Low_complexity Low_complexity 1 30 0 223 102 20 20 chr12 46325056 46325105 -97461350 + (TA)n Simple_repeat Simple_repeat 1 49 0 324 257 154 33 chr12 46325125 46325339 -97461116 + L1ME4a LINE L1 5771 6010 -111 228 352 80 37 chr12 46326002 46326164 -97460291 - L2 LINE L2 -173 3099 2931 23 33 0 0 chr12 46326445 46326475 -97459980 + AT_rich Low_complexity Low_complexity 1 30 0 304 242 74 21 chr12 46328347 46328442 -97458013 - L2 LINE L2 0 3272 3173 264 344 178 32 chr12 46328411 46329290 -97457165 - L2 LINE L2 -697 2617 1611 * 207 108 0 27 chr12 46329441 46329478 -97456977 + (TA)n Simple_repeat Simple_repeat 1 36 0 4270 195 40 4 chr12 46330239 46331205 -97455250 - L1 LINE L1 -1970 4176 3176 463 160 113 0 chr12 46331318 46331424 -97455031 - MER5C DNA MER1_type -136 188 71 1446 140 67 74 chr12 46331424 46331709 -97454746 - AluJo SINE Alu -29 283 1 313 212 0 9 chr12 46331709 46331822 -97454633 - L1 LINE L1 -2955 3191 3080 277 247 45 0 chr12 46331869 46331958 -97454497 - L1 LINE L1 -3065 3081 2989 2360 165 26 2 chr12 46332229 46332647 -97453808 - MSTA LTR MaLR 0 428 1 342 284 10 0 chr12 46332792 46332894 -97453561 + MLT1L LTR MaLR 513 615 0 24 0 0 0 chr12 46333702 46333726 -97452729 + AT_rich Low_complexity Low_complexity 1 24 0 267 300 103 43 chr12 46333799 46334146 -97452309 - MLT2E LTR ERVL -7 621 320 * 397 352 7 0 chr12 46334123 46334265 -97452190 - MLT2E LTR ERVL -452 176 34 377 289 59 7 chr12 46334286 46334421 -97452034 - ERVL-E LTR ERVL -19 5745 5604 1406 281 69 52 chr12 46334590 46335187 -97451268 - ERVL-E LTR ERVL -333 5431 4825 191 256 85 61 chr12 46335721 46335803 -97450652 + L3b LINE CR1 1176 1259 -324 21 36 0 0 chr12 46336866 46336894 -97449561 + AT_rich Low_complexity Low_complexity 1 28 0 351 248 96 8 chr12 46337107 46337232 -97449223 + MIR SINE MIR 46 181 -81 1429 182 42 10 chr12 46337536 46337844 -97448611 - MER33 DNA MER1_type -5 319 2 564 218 182 6 chr12 46338809 46338979 -97447476 - MIR SINE MIR -27 235 36 425 106 149 11 chr12 46339071 46339165 -97447290 + MER5C DNA MER1_type 75 181 -143 313 218 71 100 chr12 46339529 46339699 -97446756 + MIR SINE MIR 46 210 -52 2105 135 0 0 chr12 46339909 46340205 -97446250 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr12 46340826 46340852 -97445603 + AT_rich Low_complexity Low_complexity 1 26 0 270 229 0 0 chr12 46341452 46341522 -97444933 + (TA)n Simple_repeat Simple_repeat 1 70 0 276 150 0 0 chr12 46341571 46341611 -97444844 + Alu SINE Alu 1 40 -263 23 0 0 0 chr12 46341624 46341647 -97444808 + AT_rich Low_complexity Low_complexity 1 23 0 268 324 56 42 chr12 46343015 46343157 -97443298 - L2 LINE L2 0 3313 3170 223 261 62 0 chr12 46343426 46343491 -97442964 - L2 LINE L2 -1063 2251 2183 201 327 0 0 chr12 46343509 46343561 -97442894 + L2 LINE L2 2988 3039 -233 * 301 382 6 13 chr12 46343559 46343716 -97442739 - L2 LINE L2 -1157 2157 2002 311 331 39 34 chr12 46343913 46344091 -97442364 + L1ME4a LINE L1 2234 2412 -3734 9604 198 18 8 chr12 46344398 46347279 -97439176 - L1PA15 LINE L1 0 6165 3236 403 309 93 71 chr12 46347629 46348121 -97438334 + L1ME4a LINE L1 3334 3836 -2310 21 36 0 0 chr12 46348258 46348286 -97438169 + AT_rich Low_complexity Low_complexity 1 28 0 2171 128 28 28 chr12 46348359 46348718 -97437737 + THE1B LTR MaLR 1 359 -5 4216 174 63 31 chr12 46348916 46349742 -97436713 + MER21B LTR ERV1 1 852 -11 228 302 50 32 chr12 46350087 46350365 -97436090 + L1ME4a LINE L1 4774 5056 -1090 26 64 0 0 chr12 46350445 46350492 -97435963 + AT_rich Low_complexity Low_complexity 1 47 0 293 268 104 35 chr12 46350619 46350862 -97435593 + L1ME4a LINE L1 5321 5588 -542 207 0 0 0 chr12 46350958 46350981 -97435474 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 274 254 70 28 chr12 46351187 46351329 -97435126 + L1ME4a LINE L1 5960 6107 -14 237 296 228 4 chr12 46352111 46352361 -97434094 - L2 LINE L2 -8 3264 2959 587 350 140 38 chr12 46352391 46353358 -97433097 - L2 LINE L2 -517 2797 1733 1574 206 64 40 chr12 46353362 46353813 -97432642 - MLT1C LTR MaLR 0 467 6 1011 344 96 14 chr12 46355401 46356381 -97430074 - L2 LINE L2 -1 3312 1819 598 124 9 9 chr12 46356495 46356608 -97429847 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 850 111 0 15 chr12 46356682 46356817 -97429638 - FLAM_C SINE Alu 0 133 1 14891 124 22 11 chr12 46357184 46359576 -97426879 + Tigger1 DNA MER2_type 1 2418 0 221 0 35 0 chr12 46359990 46360019 -97426436 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 252 0 0 0 chr12 46360018 46360046 -97426409 + (CA)n Simple_repeat Simple_repeat 1 28 0 247 292 31 21 chr12 46361202 46361298 -97425157 + L2 LINE L2 2420 2516 -798 202 244 0 0 chr12 46363179 46363220 -97423235 + CT-rich Low_complexity Low_complexity 3 43 0 880 182 4 103 chr12 46363302 46363544 -97422911 + MER20 DNA MER1_type 1 218 -1 1449 211 36 11 chr12 46363852 46364208 -97422247 - MLT1A1 LTR MaLR 0 365 1 200 354 38 13 chr12 46364212 46364291 -97422164 + MIR3 SINE MIR 104 184 -24 22 0 0 0 chr12 46364876 46364898 -97421557 + AT_rich Low_complexity Low_complexity 1 22 0 203 232 36 18 chr12 46366714 46366770 -97419685 - MIR3 SINE MIR 0 208 152 423 314 54 27 chr12 46367991 46368176 -97418279 + MIR SINE MIR 14 203 -59 24 32 0 0 chr12 46368884 46368915 -97417540 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr12 46369087 46369126 -97417329 + AT_rich Low_complexity Low_complexity 1 39 0 1966 221 60 28 chr12 46369294 46369828 -97416627 + MER74A LTR ERVL 1 551 -7 238 259 14 7 chr12 46369849 46369998 -97416457 + GA-rich Low_complexity Low_complexity 1 150 0 1983 94 21 10 chr12 46370019 46370307 -97416148 - AluSc SINE Alu -18 291 1 3640 98 34 4 chr12 46370332 46370870 -97415585 + MER41A LTR ERV1 1 554 0 400 299 8 22 chr12 46371076 46371210 -97415245 + MIR SINE MIR 120 251 -11 217 357 10 0 chr12 46371389 46371487 -97414968 - MER5B DNA MER1_type -75 103 5 5761 143 43 41 chr12 46371563 46372867 -97413588 - L1MA7 LINE L1 0 6291 4947 286 77 0 0 chr12 46372867 46372906 -97413549 - MER4D LTR ERV1 -74 798 760 5761 143 43 41 chr12 46372906 46373145 -97413310 - L1MA7 LINE L1 -1344 4947 4710 21 0 0 0 chr12 46373329 46373350 -97413105 + AT_rich Low_complexity Low_complexity 1 21 0 318 246 18 102 chr12 46373554 46373721 -97412734 + MIR SINE MIR 21 173 -89 1207 136 103 8 chr12 46374440 46374682 -97411773 - MSTA LTR MaLR 0 428 164 7407 143 113 10 chr12 46374684 46376106 -97410349 - MSTA-int LTR MaLR -9 1571 3 1892 160 131 8 chr12 46376108 46376489 -97409966 - MSTA LTR MaLR 0 428 1 357 287 96 18 chr12 46376519 46376686 -97409769 + L1ME4a LINE L1 5743 5922 -199 307 252 17 50 chr12 46376704 46376823 -97409632 + L1ME4a LINE L1 6004 6118 -3 2190 289 72 12 chr12 46377331 46378390 -97408065 - L2 LINE L2 0 3313 2196 357 222 0 14 chr12 46378679 46378751 -97407704 + MER5A DNA MER1_type 27 97 -92 322 234 26 0 chr12 46378786 46378863 -97407592 - LTR67 LTR ERVL -74 483 405 931 257 104 25 chr12 46379405 46379941 -97406514 + MLT2E LTR ERVL 1 626 -2 477 277 31 19 chr12 46380364 46380523 -97405932 - MLT2E LTR ERVL -138 490 330 311 263 0 0 chr12 46380543 46380623 -97405832 + ERVL LTR ERVL 475 554 -5210 211 255 21 0 chr12 46380908 46380955 -97405500 - L3 LINE CR1 -1 1576 1529 297 0 0 0 chr12 46382585 46382618 -97403837 + (CA)n Simple_repeat Simple_repeat 2 34 0 2362 278 154 41 chr12 46383302 46383395 -97403060 - L2 LINE L2 -1526 1788 1707 2151 98 21 0 chr12 46383395 46383682 -97402773 - AluSx SINE Alu -19 293 1 2362 278 154 41 chr12 46383682 46384843 -97401612 - L2 LINE L2 -1607 1707 393 3602 95 15 2 chr12 46387117 46387645 -97398810 - L1PA14 LINE L1 0 6161 5627 461 354 40 0 chr12 46387874 46388049 -97398406 + MIR SINE MIR 11 192 -70 1639 158 36 88 chr12 46388629 46389040 -97397415 + MLT1B LTR MaLR 1 390 0 354 45 0 0 chr12 46389548 46389592 -97396863 + (CA)n Simple_repeat Simple_repeat 1 44 0 453 329 43 6 chr12 46390269 46390430 -97396025 + MIR SINE MIR 22 188 -74 1079 257 102 42 chr12 46390486 46391023 -97395432 + MLT1G LTR MaLR 12 554 -36 2156 128 0 0 chr12 46391023 46391328 -97395127 - AluSp SINE Alu -8 305 1 1079 257 102 42 chr12 46391328 46391368 -97395087 + MLT1G LTR MaLR 554 590 0 220 273 15 0 chr12 46392221 46392287 -97394168 + GA-rich Low_complexity Low_complexity 1 67 0 258 306 35 12 chr12 46392950 46393035 -97393420 - L3 LINE CR1 -146 1431 1345 2075 105 56 0 chr12 46393251 46393536 -97392919 + AluSq SINE Alu 9 309 -4 2302 87 0 3 chr12 46394681 46394980 -97391475 + AluSx SINE Alu 1 298 -14 399 41 0 0 chr12 46395382 46395431 -97391024 + (CA)n Simple_repeat Simple_repeat 1 49 0 180 191 0 44 chr12 46395610 46395678 -97390777 + CT-rich Low_complexity Low_complexity 5 69 0 181 286 286 0 chr12 46396988 46397051 -97389404 + L2 LINE L2 3155 3235 -37 263 368 53 0 chr12 46397086 46397162 -97389293 - L2 LINE L2 -37 3235 3156 183 244 22 0 chr12 46398041 46398086 -97388369 - L2 LINE L2 -1905 1409 1364 22 0 0 0 chr12 46398652 46398674 -97387781 + AT_rich Low_complexity Low_complexity 1 22 0 2565 40 0 7 chr12 46398746 46399043 -97387412 - AluY SINE Alu -16 295 1 363 286 54 27 chr12 46399535 46399647 -97386808 - L2 LINE L2 -5 3267 3153 575 316 22 30 chr12 46400363 46400594 -97385861 + MIR SINE MIR 3 231 -31 317 327 49 37 chr12 46400747 46400909 -97385546 - L2 LINE L2 -217 3055 2892 1954 130 10 7 chr12 46401013 46401305 -97385150 - AluSq SINE Alu -20 293 1 24 32 0 0 chr12 46402510 46402541 -97383914 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr12 46402868 46402906 -97383549 + AT_rich Low_complexity Low_complexity 1 38 0 240 86 0 0 chr12 46406065 46406100 -97380355 + (A)n Simple_repeat Simple_repeat 1 35 0 424 226 24 61 chr12 46406268 46406432 -97380023 - MER5B DNA MER1_type -1 177 20 21 0 0 0 chr12 46406653 46406674 -97379781 + AT_rich Low_complexity Low_complexity 1 21 0 5173 120 25 15 chr12 46406697 46407698 -97378757 - L1PA13 LINE L1 -1 6162 5153 462 339 51 31 chr12 46407797 46408054 -97378401 - L3b LINE CR1 -34 1549 1288 22 0 0 0 chr12 46413185 46413207 -97373248 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 46413369 46413397 -97373058 + AT_rich Low_complexity Low_complexity 1 28 0 512 282 105 14 chr12 46414884 46415093 -97371362 - MIR SINE MIR -15 247 20 739 259 43 74 chr12 46415321 46415563 -97370892 + MER34 LTR ERV1 1 249 -293 1775 176 0 14 chr12 46415563 46415853 -97370602 - AluJo SINE Alu -21 291 6 739 259 43 74 chr12 46415853 46416203 -97370252 + MER34 LTR ERV1 249 541 -1 212 267 79 40 chr12 46416682 46416783 -97369672 - MIR SINE MIR -135 127 23 396 0 0 0 chr12 46416811 46416855 -97369600 + (TA)n Simple_repeat Simple_repeat 1 44 0 2058 119 35 0 chr12 46417490 46417776 -97368679 - AluSg SINE Alu -14 296 1 468 269 122 0 chr12 46417812 46417968 -97368487 + MIR SINE MIR 37 211 -51 970 182 6 0 chr12 46418054 46418213 -97368242 - FRAM SINE Alu -6 160 1 506 192 43 42 chr12 46418510 46418654 -97367801 - L1MB8 LINE L1 -352 5826 5683 334 235 157 6 chr12 46418655 46418821 -97367634 - L1MB8 LINE L1 -610 5560 5370 323 296 27 27 chr12 46418820 46419044 -97367411 - L1MEc LINE L1 -3860 2394 2172 * 285 332 15 24 chr12 46419333 46419538 -97366917 - HAL1 LINE L1 -856 1651 1449 1061 258 77 86 chr12 46419667 46420457 -97365998 - L1MEc LINE L1 -4900 1305 523 268 233 95 17 chr12 46420707 46420823 -97365632 - L1MEc LINE L1 -5992 213 89 285 29 0 0 chr12 46420897 46420931 -97365524 + (TG)n Simple_repeat Simple_repeat 1 34 0 187 294 20 0 chr12 46422373 46422424 -97364031 + L2 LINE L2 3008 3059 -213 220 245 19 0 chr12 46422470 46422523 -97363932 - MIR SINE MIR -12 250 197 393 317 92 38 chr12 46422560 46423074 -97363381 - L2 LINE L2 -15 3298 2760 * 555 278 73 21 chr12 46423062 46423253 -97363202 - MIR SINE MIR -44 218 18 22 0 0 0 chr12 46423668 46423690 -97362765 + AT_rich Low_complexity Low_complexity 1 22 0 213 192 0 19 chr12 46424032 46424084 -97362371 - L2 LINE L2 0 3313 3263 * 220 118 0 0 chr12 46424053 46424087 -97362368 - MIR SINE MIR -14 248 215 525 104 0 0 chr12 46424596 46424673 -97361782 + (CA)n Simple_repeat Simple_repeat 1 77 0 361 289 118 52 chr12 46425274 46425579 -97360876 + MLT1J LTR MaLR 92 416 -95 372 43 0 0 chr12 46425623 46425669 -97360786 + (TG)n Simple_repeat Simple_repeat 1 46 0 513 294 44 39 chr12 46425839 46426019 -97360436 - MIR SINE MIR -64 198 18 539 346 5 0 chr12 46426125 46426313 -97360142 + MIR3 SINE MIR 20 208 0 252 281 101 105 chr12 46426715 46426938 -97359517 + MIR SINE MIR 15 238 -24 261 331 32 57 chr12 46428316 46428473 -97357982 + L2 LINE L2 3152 3304 -9 319 250 25 0 chr12 46428816 46428896 -97357559 + MIR SINE MIR 181 262 0 379 271 53 85 chr12 46429404 46429592 -97356863 + L1MEd LINE L1 4 185 -5934 2161 117 0 0 chr12 46430239 46430545 -97355910 + AluSx SINE Alu 1 306 0 1768 177 45 20 chr12 46431748 46432104 -97354351 - MLT1A1 LTR MaLR 0 365 1 1385 241 32 3 chr12 46432159 46432504 -97353951 + L1MD3 LINE L1 7468 7822 -173 183 80 0 0 chr12 46432676 46432701 -97353754 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 308 259 0 12 chr12 46432716 46432797 -97353658 - L2 LINE L2 -27 3286 3207 1304 181 50 82 chr12 46432870 46433246 -97353209 - MLT1A2 LTR MaLR -10 364 1 217 308 93 61 chr12 46434708 46434955 -97351500 - L2 LINE L2 -530 2784 2530 187 224 24 82 chr12 46435881 46435966 -97350489 + MIR SINE MIR 53 132 -130 1221 282 20 25 chr12 46436790 46437301 -97349154 + HAL1 LINE L1 1682 2189 -318 2400 110 8 8 chr12 46437483 46437838 -97348617 - THE1A LTR MaLR 0 355 1 11892 83 10 2 chr12 46437838 46439406 -97347049 - THE1A-int LTR MaLR 0 1580 1 2135 131 35 3 chr12 46439406 46439750 -97346705 - THE1A LTR MaLR 0 355 1 700 349 70 39 chr12 46441247 46442034 -97344421 - L2 LINE L2 -5 3267 2448 185 359 72 27 chr12 46443394 46443656 -97342799 - L2 LINE L2 -593 2721 2448 339 374 92 37 chr12 46444041 46444423 -97342032 - L2 LINE L2 -8 3264 2862 2785 90 0 3 chr12 46445515 46445880 -97340575 + THE1B LTR MaLR 1 364 0 363 157 0 0 chr12 46445937 46446007 -97340448 + (CATA)n Simple_repeat Simple_repeat 2 71 0 23 0 0 0 chr12 46446493 46446516 -97339939 + AT_rich Low_complexity Low_complexity 1 23 0 1293 245 72 33 chr12 46447246 46447818 -97338637 + L1MEc LINE L1 1442 2035 -4361 1888 238 70 23 chr12 46447821 46448256 -97338199 + L1MEc LINE L1 2066 2479 -3736 1385 197 75 14 chr12 46448256 46448550 -97337905 + AluJo SINE Alu 1 312 0 1888 238 70 23 chr12 46448550 46448961 -97337494 + L1MEc LINE L1 2479 2919 -3296 22556 155 23 20 chr12 46448972 46454567 -97331888 + L1PA10 LINE L1 814 6437 -46 229 118 0 0 chr12 46454563 46454597 -97331858 - L1PA7 LINE L1 -40 6114 6081 * 21 0 0 0 chr12 46454600 46454621 -97331834 + AT_rich Low_complexity Low_complexity 1 21 0 795 163 0 0 chr12 46454621 46454774 -97331681 + L1MEc LINE L1 2928 3080 -3135 360 267 74 30 chr12 46455226 46455361 -97331094 + MIR SINE MIR 12 152 -110 482 268 14 64 chr12 46455967 46456187 -97330268 + L2 LINE L2 3105 3313 0 197 323 21 52 chr12 46456210 46456306 -97330149 + L2 LINE L2 3191 3283 -30 454 264 42 14 chr12 46456337 46456481 -97329974 + MIR SINE MIR 93 240 -22 193 205 26 26 chr12 46456447 46456486 -97329969 + L2 LINE L2 3210 3248 -24 * 367 289 9 0 chr12 46456486 46456600 -97329855 + LTR33 LTR ERVL 6 120 -401 490 217 11 0 chr12 46456817 46456909 -97329546 - MER81 DNA DNA -21 93 1 186 43 0 0 chr12 46457040 46457063 -97329392 + (CATA)n Simple_repeat Simple_repeat 2 24 0 339 270 90 9 chr12 46457068 46457179 -97329276 + MIR SINE MIR 24 143 -65 1563 220 57 41 chr12 46457443 46457903 -97328552 + MLT1C LTR MaLR 1 467 0 355 331 18 6 chr12 46458143 46458312 -97328143 + L2 LINE L2 2273 2443 -871 1701 167 13 54 chr12 46458947 46459118 -97327337 - AluJb SINE Alu -8 304 128 2244 120 0 0 chr12 46459118 46459409 -97327046 - AluSx SINE Alu -17 295 5 1701 167 13 54 chr12 46459409 46459436 -97327019 - AluJb SINE Alu -184 128 101 261 0 0 0 chr12 46459436 46459465 -97326990 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1701 167 13 54 chr12 46459465 46459582 -97326873 - AluJb SINE Alu -211 101 1 190 296 120 19 chr12 46459686 46459794 -97326661 + L2 LINE L2 2935 3053 -219 1116 210 133 39 chr12 46459853 46460268 -97326187 - MLT1C LTR MaLR -6 461 8 317 382 7 28 chr12 46460294 46460438 -97326017 + L2 LINE L2 3116 3256 -16 206 309 12 25 chr12 46460703 46460784 -97325671 - L3b LINE CR1 -96 1487 1408 416 259 211 14 chr12 46462707 46462854 -97323601 - L2 LINE L2 -1 3271 3096 347 308 140 26 chr12 46462844 46463068 -97323387 + MIR SINE MIR 8 248 -14 * 825 229 151 63 chr12 46463204 46463714 -97322741 - MLT1H1 LTR MaLR 0 555 1 225 296 41 20 chr12 46465046 46465144 -97321311 - MIR3 SINE MIR -31 177 78 482 275 101 43 chr12 46468537 46468795 -97317660 + L2 LINE L2 2154 2426 -888 244 299 23 46 chr12 46469458 46469545 -97316910 + MIR SINE MIR 26 110 -152 578 276 75 15 chr12 46469615 46469814 -97316641 + MIR SINE MIR 18 228 -34 2936 159 25 9 chr12 46470196 46470767 -97315688 + L1MC3 LINE L1 7206 7785 0 491 246 99 58 chr12 46470819 46471010 -97315445 + MIR SINE MIR 31 229 -33 2331 101 0 3 chr12 46471515 46471813 -97314642 - AluSx SINE Alu -15 297 1 238 319 51 43 chr12 46472198 46472336 -97314119 - L2 LINE L2 -1 3271 3133 1732 153 12 53 chr12 46472657 46472978 -97313477 - AluJb SINE Alu -2 310 3 204 40 0 0 chr12 46472978 46473003 -97313452 + (T)n Simple_repeat Simple_repeat 1 25 0 2993 159 33 42 chr12 46473034 46473704 -97312751 + MER39 LTR ERV1 1 705 -2 1653 176 7 7 chr12 46473910 46474199 -97312256 + AluJb SINE Alu 7 295 -17 206 269 90 15 chr12 46474403 46474470 -97311985 + MIR SINE MIR 76 147 -115 714 197 0 0 chr12 46474641 46474768 -97311687 + AluJo SINE Alu 3 129 -173 222 298 95 0 chr12 46475362 46475446 -97311009 + L2 LINE L2 3183 3274 -39 795 299 57 45 chr12 46475840 46476072 -97310383 + MLT1I LTR MaLR 1 242 -167 2181 111 3 0 chr12 46476072 46476370 -97310085 + AluSx SINE Alu 1 299 -13 795 299 57 45 chr12 46476370 46476541 -97309914 + MLT1I LTR MaLR 242 409 0 900 181 7 0 chr12 46476865 46477009 -97309446 + AluJo SINE Alu 7 151 -161 1178 155 0 0 chr12 46477030 46477204 -97309251 + AluJo SINE Alu 129 302 -10 458 313 0 0 chr12 46477205 46477339 -97309116 - MER94 DNA DNA 0 134 1 243 0 0 0 chr12 46477524 46477551 -97308904 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 2072 87 111 18 chr12 46477649 46477982 -97308473 + THE1B LTR MaLR 1 364 0 259 220 0 0 chr12 46478014 46478064 -97308391 - L2 LINE L2 -1 3312 3263 793 127 190 0 chr12 46478371 46478529 -97307926 + MER53 DNA DNA 1 188 -1 334 300 67 17 chr12 46478780 46478900 -97307555 + MIR SINE MIR 50 175 -87 266 252 151 42 chr12 46478915 46479034 -97307421 - L2 LINE L2 -3 3269 3138 241 267 105 48 chr12 46481135 46481240 -97305215 - L2 LINE L2 0 3313 3203 2211 123 0 10 chr12 46481262 46481571 -97304884 - AluSg SINE Alu -4 306 1 334 250 67 19 chr12 46481575 46481679 -97304776 - L2 LINE L2 0 3313 3205 1219 156 0 35 chr12 46481928 46482159 -97304296 - AluSg/x SINE Alu -14 296 74 254 310 155 55 chr12 46483146 46483933 -97302522 + L2 LINE L2 2380 3236 -36 3286 106 26 25 chr12 46485214 46485745 -97300710 + L1MC1 LINE L1 5785 6316 -17 541 278 60 0 chr12 46488615 46488748 -97297707 + MIR SINE MIR 1 141 -121 457 232 0 13 chr12 46488780 46488935 -97297520 + (TA)n Simple_repeat Simple_repeat 1 153 0 21 36 0 0 chr12 46489197 46489225 -97297230 + AT_rich Low_complexity Low_complexity 1 28 0 861 276 63 12 chr12 46491530 46491849 -97294606 + L1MEc LINE L1 37 371 -6025 187 326 136 0 chr12 46492629 46492776 -97293679 + L2 LINE L2 2154 2320 -994 337 238 127 24 chr12 46493100 46493226 -97293229 + L1MEd LINE L1 41 179 -5940 453 332 152 47 chr12 46493289 46493883 -97292572 + L1MEd LINE L1 270 925 -5194 539 263 22 47 chr12 46493899 46494177 -97292278 + L1MEd LINE L1 921 1191 -4928 328 343 36 0 chr12 46494341 46494481 -97291974 + L1MEd LINE L1 1312 1456 -4673 1065 301 81 11 chr12 46494494 46494939 -97291516 - LTR33 LTR ERVL -16 505 30 18641 47 2 0 chr12 46494940 46497881 -97288574 + L1PA4 LINE L1 2953 5899 -256 4252 34 2 0 chr12 46498014 46498546 -97287909 - L1PA3 LINE L1 -1542 4604 4072 7495 31 6 0 chr12 46498546 46500083 -97286372 + L1PA3 LINE L1 4614 6155 0 300 298 61 28 chr12 46500105 46500286 -97286169 + L1MEd LINE L1 1486 1672 -4638 1756 126 27 10 chr12 46500969 46501263 -97285192 + AluSx SINE Alu 1 299 -13 285 279 95 63 chr12 46501589 46501747 -97284708 - MLT1K LTR MaLR -9 579 417 299 397 35 7 chr12 46501854 46501995 -97284460 + L2 LINE L2 3127 3271 -1 38 39 0 0 chr12 46502126 46502178 -97284277 + AT_rich Low_complexity Low_complexity 1 52 0 245 351 95 12 chr12 46503846 46504014 -97282441 + L3b LINE CR1 1296 1477 -106 4098 89 41 12 chr12 46504552 46505191 -97281264 + L1MA2 LINE L1 5648 6304 0 2193 123 0 0 chr12 46505199 46505492 -97280963 + AluSx SINE Alu 1 293 -19 378 289 169 6 chr12 46506177 46506343 -97280112 + L3 LINE CR1 1222 1414 -163 2651 144 19 2 chr12 46506713 46507392 -97279063 - L1PA16 LINE L1 -492 5674 4981 2682 143 13 17 chr12 46507392 46507861 -97278594 + L1PA16 LINE L1 5695 6166 0 221 222 56 0 chr12 46508619 46508673 -97277782 - MIR SINE MIR -17 245 189 253 219 117 22 chr12 46509374 46509511 -97276944 - L1PB1 LINE L1 0 6151 6002 1898 213 31 10 chr12 46509813 46510262 -97276193 + L1MEc LINE L1 512 802 -5415 1572 267 59 74 chr12 46510286 46511368 -97275087 + L1MEc LINE L1 748 1813 -4583 241 177 210 0 chr12 46511370 46511432 -97275023 + L1ME LINE L1 5708 5782 -384 1710 172 53 20 chr12 46511681 46511983 -97274472 + AluJo SINE Alu 1 312 0 242 217 0 0 chr12 46512469 46512515 -97273940 + Tigger5 DNA MER2_type 10 55 -2268 * 407 208 0 0 chr12 46512484 46512556 -97273899 + Tigger5 DNA MER2_type 2251 2322 -1 21 0 0 0 chr12 46513576 46513597 -97272858 + AT_rich Low_complexity Low_complexity 1 21 0 180 239 141 14 chr12 46513696 46513767 -97272688 - MIR SINE MIR -48 214 135 353 244 134 86 chr12 46514377 46515357 -97271098 + L1ME3A LINE L1 1275 2495 -4446 2540 275 98 29 chr12 46515380 46515770 -97270685 + L1ME3A LINE L1 2601 2963 -3978 2247 115 0 3 chr12 46515770 46516074 -97270381 + AluSg1 SINE Alu 1 303 -6 2540 275 98 29 chr12 46516074 46517287 -97269168 + L1ME3A LINE L1 2963 4091 -2850 1852 194 9 0 chr12 46517287 46517628 -97268827 - MER2 DNA MER2_type 0 344 1 2540 275 98 29 chr12 46517628 46517643 -97268812 + L1ME3A LINE L1 4091 4104 -2837 270 116 0 0 chr12 46517643 46517686 -97268769 + (CA)n Simple_repeat Simple_repeat 1 43 0 2540 275 98 29 chr12 46517686 46518045 -97268410 + L1ME3A LINE L1 4104 4665 -2276 317 281 90 11 chr12 46518236 46518414 -97268041 + L1ME3A LINE L1 5213 5404 -1537 5935 231 72 55 chr12 46518422 46518826 -97267629 + L1MC3 LINE L1 5619 6015 -2565 434 56 0 56 chr12 46518826 46518898 -97267557 + L1PA4 LINE L1 6077 6144 -11 5935 231 72 55 chr12 46518898 46520125 -97266330 + L1MC3 LINE L1 6015 7220 -1360 2044 158 15 0 chr12 46520125 46520466 -97265989 - MER7A DNA MER2_type 0 346 3 5935 231 72 55 chr12 46520466 46521106 -97265349 + L1MC3 LINE L1 7220 7848 -732 2175 116 7 7 chr12 46521106 46521407 -97265048 + AluSx SINE Alu 1 301 -11 5935 231 72 55 chr12 46521407 46522046 -97264409 + L1MC3 LINE L1 7848 8565 -15 637 261 52 13 chr12 46522038 46522268 -97264187 + L1ME3A LINE L1 5391 5629 -1312 * 258 285 45 50 chr12 46522278 46522520 -97263935 + L1ME3A LINE L1 5701 5941 -1000 1536 214 87 36 chr12 46522550 46522648 -97263807 + L1ME3A LINE L1 6123 6215 -742 2126 121 3 3 chr12 46522648 46522946 -97263509 - AluSc SINE Alu -11 298 1 1536 214 87 36 chr12 46522946 46523319 -97263136 + L1ME3A LINE L1 6215 6618 -339 2846 207 11 14 chr12 46523321 46523969 -97262486 + L1 LINE L1 4122 4767 -1379 599 229 110 28 chr12 46524018 46524236 -97262219 + L1ME3A LINE L1 6726 6961 -4 240 111 0 0 chr12 46524699 46524744 -97261711 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 215 275 239 0 chr12 46524805 46524914 -97261541 - MIR SINE MIR -108 154 20 221 288 0 41 chr12 46524973 46525046 -97261409 - L2 LINE L2 -202 3070 3001 220 350 32 57 chr12 46525474 46525597 -97260858 - L2 LINE L2 0 3272 3153 * 550 328 184 12 chr12 46525595 46525873 -97260582 + L2 LINE L2 2186 2415 -899 1788 192 3 3 chr12 46525873 46526181 -97260274 - AluJb SINE Alu -1 311 4 550 328 184 12 chr12 46526181 46526472 -97259983 + L2 LINE L2 2415 2853 -461 196 319 121 11 chr12 46526710 46526801 -97259654 + L2 LINE L2 3200 3300 -13 1482 220 15 42 chr12 46526838 46526944 -97259511 + L1ME1 LINE L1 5765 5872 -294 1625 168 3 67 chr12 46526944 46527259 -97259196 + AluJb SINE Alu 1 295 -17 1482 220 15 42 chr12 46527259 46527561 -97258894 + L1ME1 LINE L1 5872 6162 -4 4744 175 57 19 chr12 46528672 46530485 -97255970 + L1MA9 LINE L1 4380 6272 -40 2147 86 7 7 chr12 46533687 46534010 -97252445 + AluSc SINE Alu 1 323 0 356 280 161 21 chr12 46534420 46534706 -97251749 + L1M4 LINE L1 2110 2435 -3711 337 331 163 3 chr12 46534903 46535272 -97251183 + L1M4 LINE L1 2676 3103 -3043 1940 150 0 17 chr12 46535478 46535778 -97250677 - AluJb SINE Alu -17 295 1 2078 168 37 31 chr12 46537544 46538088 -97248367 + MLT2A2 LTR ERVL 1 550 -4 218 218 18 18 chr12 46538381 46538436 -97248019 + GA-rich Low_complexity Low_complexity 1 55 0 320 304 46 80 chr12 46542092 46542277 -97244178 + MIR SINE MIR 17 194 -68 1888 154 3 3 chr12 46542277 46542569 -97243886 + AluSx SINE Alu 7 298 -14 320 304 46 80 chr12 46542569 46542620 -97243835 + MIR SINE MIR 194 245 -17 360 291 16 39 chr12 46544015 46544142 -97242313 - L2 LINE L2 -27 3245 3122 643 315 68 22 chr12 46545243 46545567 -97240888 - MLT1L LTR MaLR -48 567 229 4596 138 19 4 chr12 46545790 46546294 -97240161 - L1MA5 LINE L1 0 6300 5778 780 111 0 0 chr12 46546294 46546411 -97240044 + (TA)n Simple_repeat Simple_repeat 1 117 0 4596 138 19 4 chr12 46546411 46546676 -97239779 - L1MA5 LINE L1 -522 5778 5519 2031 144 0 0 chr12 46546683 46546974 -97239481 - AluSx SINE Alu -21 291 1 449 271 186 10 chr12 46546988 46547187 -97239268 - MLT1L LTR MaLR -381 234 1 450 307 29 87 chr12 46547263 46547540 -97238915 + MIR SINE MIR 2 262 0 219 329 64 36 chr12 46549354 46549494 -97236961 - L2 LINE L2 -11 3302 3159 2684 42 0 0 chr12 46549494 46549805 -97236650 + AluY SINE Alu 1 311 0 196 387 19 9 chr12 46550057 46550163 -97236292 + L2 LINE L2 3187 3293 -20 21 0 0 0 chr12 46550959 46550980 -97235475 + AT_rich Low_complexity Low_complexity 1 21 0 6903 232 86 53 chr12 46551153 46552453 -97234002 + L1MA9 LINE L1 15 1270 -5106 1991 148 7 0 chr12 46552453 46552751 -97233704 + AluSx SINE Alu 1 300 -12 6903 232 86 53 chr12 46552751 46554456 -97231999 + L1MA9 LINE L1 1270 2917 -3459 1839 172 17 0 chr12 46554456 46554752 -97231703 + AluSq SINE Alu 2 302 -11 6903 232 86 53 chr12 46554752 46555000 -97231455 + L1MA9 LINE L1 2917 3155 -3221 189 0 0 0 chr12 46555000 46555021 -97231434 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 6903 232 86 53 chr12 46555021 46558131 -97228324 + L1MA9 LINE L1 3155 6339 -37 596 182 61 0 chr12 46558137 46558269 -97228186 + L1MC3 LINE L1 7622 7761 -24 * 4754 122 32 0 chr12 46558268 46559813 -97226642 + L1PBa LINE L1 327 2108 -4755 2024 141 10 0 chr12 46559813 46560119 -97226336 + AluSx SINE Alu 1 309 -3 14025 180 22 18 chr12 46560306 46560574 -97225881 + L1PB1 LINE L1 1833 2098 -4769 1793 122 111 7 chr12 46560574 46560853 -97225602 + AluSg1 SINE Alu 1 308 -1 14025 180 22 18 chr12 46560853 46561107 -97225348 + L1PB1 LINE L1 2098 2349 -4518 2103 125 0 3 chr12 46561107 46561395 -97225060 - AluSq SINE Alu -25 288 2 14025 180 22 18 chr12 46561395 46565849 -97220606 + L1PB1 LINE L1 2349 6867 0 22 56 0 0 chr12 46565893 46565929 -97220526 + AT_rich Low_complexity Low_complexity 1 36 0 1139 191 75 97 chr12 46566000 46566043 -97220412 + MLT1A1 LTR MaLR 1 43 -322 1875 172 3 7 chr12 46566043 46566340 -97220115 - AluSx SINE Alu -16 296 1 1139 191 75 97 chr12 46566340 46566667 -97219788 + MLT1A1 LTR MaLR 43 363 -2 514 337 158 17 chr12 46566928 46567645 -97218810 + L1MC4a LINE L1 5191 5392 -754 456 206 59 59 chr12 46568893 46569029 -97217426 + MER20 DNA MER1_type 1 136 -83 222 37 0 0 chr12 46569047 46569074 -97217381 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 680 265 27 16 chr12 46569359 46569544 -97216911 + MIR SINE MIR 49 235 -27 2090 214 45 47 chr12 46570568 46571123 -97215332 + MLT2B3 LTR ERVL 1 554 0 2148 132 7 0 chr12 46571195 46571505 -97214950 - AluSx SINE Alu 0 312 1 412 264 9 27 chr12 46571722 46571832 -97214623 - MIR SINE MIR -65 143 36 423 0 0 0 chr12 46572281 46572328 -97214127 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 337 228 22 0 chr12 46573167 46573259 -97213196 - L1M2 LINE L1 -5353 1496 1403 500 257 66 143 chr12 46573432 46573704 -97212751 - MIR SINE MIR 0 262 12 5124 179 16 4 chr12 46573763 46575028 -97211427 + L1M2 LINE L1 1307 2678 -4171 268 318 47 0 chr12 46575344 46575429 -97211026 - MIR3 SINE MIR -17 191 103 2055 155 78 32 chr12 46575456 46575856 -97210599 + Tigger4(Zombi) DNA MER2_type 1 418 -2313 5622 145 17 31 chr12 46575856 46577193 -97209262 + L1MA6 LINE L1 4261 5567 -733 2187 111 0 13 chr12 46577193 46577499 -97208956 + AluY SINE Alu 1 302 -9 5622 145 17 31 chr12 46577499 46578224 -97208231 + L1MA6 LINE L1 5567 6300 0 515 290 72 0 chr12 46578254 46578392 -97208063 - MER5A DNA MER1_type -11 178 31 212 103 0 0 chr12 46578452 46578481 -97207974 - MER5A DNA MER1_type -160 29 1 1460 113 0 33 chr12 46579844 46580057 -97206398 + AluSq SINE Alu 1 206 -107 637 345 82 88 chr12 46580648 46581614 -97204841 - L2 LINE L2 0 3272 2309 225 0 0 0 chr12 46582589 46582614 -97203841 + (A)n Simple_repeat Simple_repeat 1 25 0 1779 168 31 3 chr12 46583595 46583886 -97202569 + AluJo SINE Alu 1 299 -13 2066 77 88 3 chr12 46584552 46584837 -97201618 + AluY SINE Alu 1 309 -2 379 310 26 0 chr12 46585275 46585388 -97201067 - MIR SINE MIR -3 259 144 1038 170 28 19 chr12 46585389 46585601 -97200854 - MLT1E LTR MaLR -1 592 379 622 298 14 104 chr12 46586087 46586453 -97200002 + L2 LINE L2 2940 3272 0 233 270 0 54 chr12 46586610 46586684 -97199771 - L2 LINE L2 -9 3304 3235 399 255 46 84 chr12 46586955 46587194 -97199261 + L2 LINE L2 769 998 -2316 2394 212 16 4 chr12 46587208 46587708 -97198747 + LTR53 LTR ERVL 14 519 0 499 309 149 3 chr12 46587714 46588002 -97198453 + L2 LINE L2 1007 1336 -1978 572 269 195 38 chr12 46588040 46588434 -97198021 + L2 LINE L2 2842 3297 -16 264 259 49 37 chr12 46589056 46589137 -97197318 - L2 LINE L2 -39 3233 3152 25 65 0 0 chr12 46589475 46589521 -97196934 + AT_rich Low_complexity Low_complexity 1 46 0 2389 81 0 0 chr12 46590043 46590341 -97196114 + AluY SINE Alu 1 298 -13 2574 59 0 0 chr12 46592404 46592710 -97193745 + AluY SINE Alu 1 306 -5 273 118 0 0 chr12 46593583 46593634 -97192821 + (TC)n Simple_repeat Simple_repeat 1 51 0 774 222 151 105 chr12 46593752 46594248 -97192207 + MLT1H LTR MaLR 3 521 -28 375 281 150 42 chr12 46594632 46594799 -97191656 + MLT1K LTR MaLR 396 580 -8 228 35 0 0 chr12 46595258 46595287 -97191168 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 259 247 0 25 chr12 46595493 46595574 -97190881 + LTR67 LTR ERVL 465 543 -14 685 279 42 70 chr12 46595693 46596048 -97190407 + MLT1J1 LTR MaLR 95 439 -7 197 284 157 0 chr12 46596847 46596949 -97189506 + MIR SINE MIR 26 143 -119 234 219 137 0 chr12 46597149 46597222 -97189233 + MIR SINE MIR 97 179 -83 186 227 0 0 chr12 46597261 46597305 -97189150 + (TA)n Simple_repeat Simple_repeat 2 45 0 4255 136 60 73 chr12 46597307 46598188 -97188267 + MER4D LTR ERV1 3 872 0 516 226 0 0 chr12 46599522 46599646 -97186809 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 411 286 21 7 chr12 46599707 46599847 -97186608 + GA-rich Low_complexity Low_complexity 1 142 0 347 160 13 0 chr12 46600059 46600134 -97186321 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 2109 123 3 3 chr12 46600586 46600879 -97185576 + AluSx SINE Alu 2 294 -18 2457 42 10 39 chr12 46601029 46601341 -97185114 - AluY SINE Alu -8 303 1 2558 46 0 7 chr12 46601524 46601831 -97184624 - AluY SINE Alu 0 311 7 23 0 0 0 chr12 46601927 46601950 -97184505 + AT_rich Low_complexity Low_complexity 1 23 0 1654 178 14 14 chr12 46602044 46602337 -97184118 + AluJo SINE Alu 6 298 -14 542 273 0 0 chr12 46602594 46602726 -97183729 - L1 LINE L1 -3411 2735 2604 684 245 78 16 chr12 46602828 46603073 -97183382 + L1ME1 LINE L1 5905 6164 -2 181 293 165 24 chr12 46603089 46603301 -97183154 + L2 LINE L2 2733 2974 -340 * 442 316 72 109 chr12 46603278 46603753 -97182702 + L2 LINE L2 2814 3270 -2 216 306 163 20 chr12 46603950 46604048 -97182407 + L2 LINE L2 3149 3260 -12 637 137 103 17 chr12 46604049 46604166 -97182289 + FLAM_C SINE Alu 1 127 -16 261 75 0 0 chr12 46604895 46604935 -97181520 + (CA)n Simple_repeat Simple_repeat 1 40 0 313 179 0 64 chr12 46605275 46605353 -97181102 - MER96 DNA MER1_type? 0 175 103 730 320 93 6 chr12 46605460 46605782 -97180673 + L2 LINE L2 2963 3312 -1 754 265 70 54 chr12 46606034 46606476 -97179979 - MLT1G LTR MaLR 0 590 142 1431 188 3 49 chr12 46606725 46607049 -97179406 + AluJb SINE Alu 3 311 -1 450 299 11 11 chr12 46607369 46607543 -97178912 - MLT1G1-int LTR MaLR -887 484 311 346 209 25 87 chr12 46607703 46607817 -97178638 - MLT1G1 LTR MaLR -8 646 527 1758 152 26 26 chr12 46607817 46608120 -97178335 + AluSx SINE Alu 5 307 -5 346 209 25 87 chr12 46608120 46608187 -97178268 - MLT1G1 LTR MaLR -127 527 367 567 260 114 14 chr12 46608237 46608456 -97177999 - MLT1G1 LTR MaLR -276 319 79 201 121 0 0 chr12 46608549 46608582 -97177873 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 245 352 42 35 chr12 46608644 46608786 -97177669 + L2 LINE L2 3171 3313 0 1513 192 40 29 chr12 46609670 46610045 -97176410 - L1 LINE L1 -3544 2602 2224 2272 123 0 0 chr12 46610437 46610737 -97175718 - AluSx SINE Alu -12 300 1 344 310 84 65 chr12 46611160 46611315 -97175140 - L2 LINE L2 0 3272 3115 429 299 137 25 chr12 46611658 46611862 -97174593 - L2 LINE L2 -2 3270 3044 191 304 217 0 chr12 46611884 46611976 -97174479 + L2 LINE L2 3202 3313 0 254 171 14 0 chr12 46612280 46612350 -97174105 + GA-rich Low_complexity Low_complexity 2 72 0 329 250 67 17 chr12 46613119 46613299 -97173156 + L1ME4a LINE L1 5543 5731 -390 257 304 118 28 chr12 46613320 46613609 -97172846 + L1ME4a LINE L1 5805 6119 -2 25 65 0 0 chr12 46613612 46613658 -97172797 + AT_rich Low_complexity Low_complexity 1 46 0 856 257 19 19 chr12 46614663 46614920 -97171535 + MIR SINE MIR 6 262 0 219 225 42 14 chr12 46615250 46615321 -97171134 + MIR SINE MIR 70 142 -66 1798 106 23 0 chr12 46616045 46616310 -97170145 + L1PA14 LINE L1 5890 6160 -1 1928 134 17 7 chr12 46616351 46616643 -97169812 + AluSx SINE Alu 1 295 -17 828 282 108 35 chr12 46616867 46617321 -97169134 - MLT1J LTR MaLR 0 511 25 982 121 64 0 chr12 46617333 46617490 -97168965 - AluSq SINE Alu -11 302 136 2320 63 10 7 chr12 46617492 46617793 -97168662 - AluY SINE Alu -9 302 1 474 284 82 0 chr12 46617796 46617930 -97168525 + MER5A DNA MER1_type 1 145 -44 409 303 53 15 chr12 46620413 46620545 -97165910 + L2 LINE L2 3136 3272 0 183 239 0 0 chr12 46621742 46621788 -97164667 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 230 306 91 8 chr12 46622048 46622169 -97164286 + L2 LINE L2 1294 1424 -1890 414 322 40 10 chr12 46622177 46622379 -97164076 + L2 LINE L2 1894 2101 -1213 230 281 0 0 chr12 46622711 46622775 -97163680 - MLT1I LTR MaLR -263 146 83 387 262 17 64 chr12 46622931 46623103 -97163352 + L2 LINE L2 2213 2376 -938 231 250 16 0 chr12 46623425 46623489 -97162966 - MLT2F LTR ERVL -35 593 529 838 295 139 8 chr12 46623620 46624000 -97162455 - MLT2F LTR ERVL -227 436 7 1871 162 0 0 chr12 46624397 46624681 -97161774 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr12 46624681 46624719 -97161736 + (CA)n Simple_repeat Simple_repeat 2 39 0 1137 138 6 17 chr12 46624722 46624903 -97161552 + AluSg/x SINE Alu 132 310 -2 186 133 0 0 chr12 46625773 46625803 -97160652 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 183 292 34 56 chr12 46627295 46627384 -97159071 + L2 LINE L2 3184 3270 -2 658 279 77 18 chr12 46628558 46628798 -97157657 + MIR SINE MIR 11 261 -1 465 324 93 31 chr12 46630062 46630287 -97156168 - MIR SINE MIR -3 259 21 1073 187 4 61 chr12 46630775 46631005 -97155450 - MER20 DNA MER1_type 0 219 3 566 227 61 0 chr12 46632102 46632234 -97154221 - MIR SINE MIR -114 148 9 265 127 109 71 chr12 46633090 46633251 -97153204 + MER33 DNA MER1_type 43 282 -2342 1752 153 76 0 chr12 46633251 46633526 -97152929 - AluSx SINE Alu -16 296 1 265 127 109 71 chr12 46633526 46633552 -97152903 + MER33 DNA MER1_type 282 306 -57 * 1074 204 80 2 chr12 46633548 46633995 -97152460 + MLT1D LTR MaLR 9 505 0 231 125 50 0 chr12 46633995 46634034 -97152421 + MER33 DNA MER1_type 260 300 -24 1029 157 0 24 chr12 46634052 46634218 -97152237 - AluJb SINE Alu -17 295 134 1074 151 94 124 chr12 46634800 46635171 -97151284 + MLT1B LTR MaLR 11 370 -20 2836 209 55 37 chr12 46635983 46636716 -97149739 - MER21B LTR ERV1 -113 750 5 518 312 72 34 chr12 46638454 46638691 -97147764 + MIR SINE MIR 7 252 -10 236 238 0 0 chr12 46639088 46639130 -97147325 - L2 LINE L2 -21 3251 3210 462 320 184 39 chr12 46639142 46639631 -97146824 - L2 LINE L2 -5 3308 2743 2384 46 0 40 chr12 46640544 46640847 -97145608 - AluY SINE Alu -1 310 20 271 363 0 0 chr12 46641812 46641892 -97144563 + L2 LINE L2 3234 3313 0 1803 252 65 31 chr12 46642142 46642659 -97143796 + MLT1G1 LTR MaLR 5 545 -50 2245 88 3 3 chr12 46642659 46642963 -97143492 - AluSp SINE Alu 0 304 1 1803 252 65 31 chr12 46642963 46643016 -97143439 + MLT1G1 LTR MaLR 545 595 0 466 220 130 34 chr12 46643675 46643852 -97142603 + MER63A DNA MER1_type 1 194 -16 1028 281 65 12 chr12 46643890 46644228 -97142227 - MLT1J1 LTR MaLR -89 357 2 234 258 186 32 chr12 46644616 46644740 -97141715 + MIR SINE MIR 110 252 -10 25 0 0 0 chr12 46645126 46645151 -97141304 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chr12 46646015 46646054 -97140401 + AT_rich Low_complexity Low_complexity 1 39 0 290 367 57 0 chr12 46646920 46647078 -97139377 - MIR SINE MIR -81 181 15 312 229 143 9 chr12 46650254 46650359 -97136096 - L1ME LINE L1 -636 5530 5412 326 201 34 47 chr12 46650475 46650578 -97135877 - L1ME LINE L1 -737 5414 5316 1355 141 62 8 chr12 46650578 46650819 -97135636 - L1PB1 LINE L1 -3 6148 5895 326 201 34 47 chr12 46650819 46650872 -97135583 - L1ME LINE L1 -835 5316 5264 186 43 0 0 chr12 46650876 46650899 -97135556 + (TA)n Simple_repeat Simple_repeat 1 23 0 619 279 62 50 chr12 46651423 46652142 -97134313 - L1ME2 LINE L1 -300 5847 5111 1453 152 40 10 chr12 46652142 46652438 -97134017 - L1MA4 LINE L1 0 6300 5996 619 279 62 50 chr12 46652438 46652661 -97133794 - L1ME2 LINE L1 -1036 5111 4892 1037 266 100 24 chr12 46652911 46652990 -97133465 - L1ME2 LINE L1 -1544 4585 4513 1735 126 59 54 chr12 46652990 46653363 -97133092 - THE1C LTR MaLR 0 375 1 1037 266 100 24 chr12 46653363 46653951 -97132504 - L1ME2 LINE L1 -1616 4513 3867 442 327 42 56 chr12 46654158 46654279 -97132176 - L1ME2 LINE L1 -2506 3623 3502 2210 112 0 3 chr12 46654279 46654574 -97131881 - AluSg SINE Alu -16 294 1 442 327 42 56 chr12 46654574 46654758 -97131697 - L1ME2 LINE L1 -2627 3502 3322 563 259 43 0 chr12 46654803 46654919 -97131536 + MIR SINE MIR 6 126 -136 519 300 45 12 chr12 46654964 46655211 -97131244 - HAL1 LINE L1 -938 1569 1315 2127 148 7 0 chr12 46655261 46655636 -97130819 + AluSq SINE Alu 1 377 0 828 121 35 12 chr12 46655653 46655826 -97130629 + GA-rich Low_complexity Low_complexity 2 178 0 362 256 56 0 chr12 46655836 46655926 -97130529 - L1ME2 LINE L1 -4953 1166 1072 2099 140 7 0 chr12 46656278 46656585 -97129870 + AluSx SINE Alu 1 309 -3 363 331 26 13 chr12 46657941 46658095 -97128360 + MIR SINE MIR 95 250 -12 2209 128 78 67 chr12 46658218 46658665 -97127790 - LTR47A LTR ERVL 0 452 1 2233 189 81 84 chr12 46659625 46660340 -97126115 - LTR8A LTR ERV1 -14 713 1 602 287 51 0 chr12 46660573 46660730 -97125725 + MIR SINE MIR 97 261 -1 450 0 0 0 chr12 46662260 46662310 -97124145 + (CA)n Simple_repeat Simple_repeat 2 51 0 262 283 61 20 chr12 46663401 46663500 -97122955 - MIR SINE MIR -70 192 90 213 173 0 58 chr12 46663924 46663976 -97122479 - L2 LINE L2 0 3272 3224 402 276 172 0 chr12 46664240 46664374 -97122081 + MIR3 SINE MIR 44 200 -8 23 0 0 0 chr12 46664454 46664477 -97121978 + AT_rich Low_complexity Low_complexity 1 23 0 409 298 135 23 chr12 46665078 46665293 -97121162 + Charlie8 DNA MER1_type 5 243 -2174 2192 157 57 12 chr12 46665318 46665720 -97120735 - L1MB1 LINE L1 -221 5947 5528 199 174 43 0 chr12 46665806 46665852 -97120603 + L2 LINE L2 3216 3263 -9 257 224 75 0 chr12 46666533 46666600 -97119855 + MIR3 SINE MIR 98 169 -39 282 316 59 0 chr12 46670857 46670993 -97115462 - MIR3 SINE MIR -54 154 11 596 283 132 9 chr12 46672361 46672573 -97113882 + MIR SINE MIR 9 246 -16 561 330 54 18 chr12 46672713 46672934 -97113521 + MIR SINE MIR 20 248 -14 290 298 161 43 chr12 46673034 46673313 -97113142 + L2 LINE L2 2997 3308 -5 2728 94 30 6 chr12 46673431 46673793 -97112662 - THE1C LTR MaLR 0 375 5 392 298 39 39 chr12 46673994 46674175 -97112280 - MER5A DNA MER1_type -2 187 7 218 233 156 22 chr12 46674734 46674824 -97111631 + MIR3 SINE MIR 4 105 -103 29 0 0 0 chr12 46675474 46675503 -97110952 + AT_rich Low_complexity Low_complexity 1 29 0 683 258 59 16 chr12 46676495 46676681 -97109774 - MIR SINE MIR -13 249 56 1668 196 10 7 chr12 46676797 46677098 -97109357 + AluJo SINE Alu 3 304 -8 304 239 141 0 chr12 46677161 46677253 -97109202 - MIR SINE MIR -78 184 80 5101 277 124 29 chr12 46677338 46679646 -97106809 - L2 LINE L2 -2 3311 789 787 167 0 8 chr12 46679693 46679825 -97106630 + MSTB LTR MaLR 211 341 -85 41798 46 9 3 chr12 46680496 46685711 -97100744 + L1PA4 LINE L1 209 5467 -688 207 0 0 0 chr12 46685711 46685734 -97100721 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 41798 46 9 3 chr12 46685734 46686420 -97100035 + L1PA4 LINE L1 5467 6147 -8 1795 145 7 14 chr12 46686835 46687118 -97099337 + MER65A LTR ERV1 40 320 -125 780 170 0 50 chr12 46687119 46687260 -97099195 + FLAM_A SINE Alu 8 141 -1 667 133 100 0 chr12 46687261 46687381 -97099074 + MER65A LTR ERV1 314 445 0 1573 272 177 32 chr12 46687381 46687669 -97098786 - L2 LINE L2 -2517 797 552 1740 160 10 14 chr12 46687669 46687957 -97098498 - AluJo SINE Alu -19 293 7 1573 272 177 32 chr12 46687957 46688359 -97098096 - L2 LINE L2 -2762 552 7 480 179 0 0 chr12 46688427 46688505 -97097950 + MER3 DNA MER1_type 8 85 -124 258 305 186 26 chr12 46689875 46690101 -97096354 - MIR SINE MIR 0 262 1 22 0 0 0 chr12 46690230 46690252 -97096203 + AT_rich Low_complexity Low_complexity 1 22 0 2338 91 17 0 chr12 46690464 46690762 -97095693 + AluY SINE Alu 1 303 -8 316 242 157 39 chr12 46690881 46691034 -97095421 - MIR SINE MIR -28 234 64 1683 202 30 46 chr12 46691045 46691416 -97095039 + MLT1A1 LTR MaLR 1 365 0 309 320 32 32 chr12 46691454 46691579 -97094876 + L3 LINE CR1 531 655 -922 200 147 0 0 chr12 46691746 46691780 -97094675 + L3 LINE CR1 968 1001 -576 20919 91 18 11 chr12 46691839 46695498 -97090957 - L1PA7 LINE L1 -7 6462 2784 13131 98 21 19 chr12 46695499 46698346 -97088109 - L1PA7 LINE L1 -3588 2873 13 220 345 70 41 chr12 46698350 46698521 -97087934 + L3 LINE CR1 1089 1264 -313 220 333 12 25 chr12 46698665 46698746 -97087709 + L3 LINE CR1 1450 1529 -48 707 264 66 6 chr12 46699197 46699379 -97087076 - MIR SINE MIR -27 235 43 251 365 0 0 chr12 46700373 46700447 -97086008 - L2 LINE L2 -47 3266 3193 636 274 98 42 chr12 46700448 46700875 -97085580 + L1ME4a LINE L1 5643 6093 -28 700 277 139 60 chr12 46700879 46701362 -97085093 - LTR33A LTR ERVL -2 521 1 1391 245 115 41 chr12 46702071 46702816 -97083639 + L2 LINE L2 2503 3313 0 1172 163 25 10 chr12 46703063 46703259 -97083196 - AluJb SINE Alu -23 289 91 355 305 186 54 chr12 46703269 46704361 -97082094 + L2 LINE L2 1639 2874 -440 705 253 129 39 chr12 46704462 46704695 -97081760 + MIR SINE MIR 9 262 0 363 316 91 52 chr12 46704735 46704966 -97081489 + L2 LINE L2 3033 3272 0 366 300 32 82 chr12 46705001 46705221 -97081234 - MIR SINE MIR -34 228 20 1360 167 5 0 chr12 46705402 46705617 -97080838 + AluJo SINE Alu 78 293 -19 1471 91 0 0 chr12 46705730 46705917 -97080538 + AluY SINE Alu 55 241 -70 2621 189 61 65 chr12 46706024 46706681 -97079774 + MLT1E1 LTR MaLR 1 654 0 296 277 59 91 chr12 46706797 46707017 -97079438 - MLT1J LTR MaLR -200 311 99 1737 134 124 3 chr12 46708084 46708374 -97078081 + MER7A DNA MER2_type 24 346 0 242 318 16 0 chr12 46708640 46708703 -97077752 + MIR SINE MIR 13 76 -186 186 218 15 196 chr12 46709225 46709358 -97077097 - MIR SINE MIR -63 145 37 491 176 35 0 chr12 46710267 46710352 -97076103 - MLT1G3 LTR MaLR 0 590 503 3688 123 57 22 chr12 46710355 46710981 -97075474 - MER51A LTR ERV1 -2 638 1 609 242 52 26 chr12 46710984 46711371 -97075084 - MLT1G3 LTR MaLR -87 503 1 226 354 62 62 chr12 46711498 46711690 -97074765 - MIR SINE MIR -51 211 20 393 122 200 22 chr12 46713272 46713362 -97073093 - MER41B LTR ERV1 -88 547 442 488 309 120 4 chr12 46713487 46713720 -97072735 - MIR SINE MIR 0 262 3 3065 105 138 61 chr12 46713825 46714413 -97072042 - MER51A LTR ERV1 0 634 2 22 35 0 0 chr12 46714766 46714795 -97071660 + AT_rich Low_complexity Low_complexity 1 29 0 35596 42 2 3 chr12 46764857 46770030 -97016425 + L1PA4 LINE L1 732 5902 -253 2594 14 0 0 chr12 46770030 46770357 -97016098 + AluYb8 SINE Alu 1 327 0 35596 42 2 3 chr12 46770357 46770605 -97015850 + L1PA4 LINE L1 5902 6149 -6 275 240 65 134 chr12 46770702 46770919 -97015536 - L2 LINE L2 -97 3216 3015 1195 148 25 0 chr12 46770984 46771187 -97015268 - MLT1B LTR MaLR 0 390 183 2303 178 62 89 chr12 46771221 46771851 -97014604 - MER21B LTR ERV1 -54 809 197 812 146 0 44 chr12 46772177 46772335 -97014120 - MLT1B LTR MaLR -239 151 1 237 309 72 0 chr12 46772611 46772708 -97013747 + MIR SINE MIR 139 242 -20 817 204 21 5 chr12 46772744 46772930 -97013525 - MER4D LTR ERV1 0 903 715 1467 181 70 0 chr12 46772931 46773202 -97013253 + AluJb SINE Alu 1 290 -22 1157 176 124 22 chr12 46773227 46773494 -97012961 - MER49 LTR ERV1 -629 294 1 2450 131 15 8 chr12 46774041 46774439 -97012016 + MER57A LTR ERV1 1 401 -2 565 341 9 5 chr12 46774859 46775073 -97011382 + L3 LINE CR1 1319 1533 -44 1691 203 20 89 chr12 46775391 46775929 -97010526 + MLT1D LTR MaLR 1 501 -4 358 275 22 0 chr12 46775938 46776076 -97010379 - L1ME4a LINE L1 -17 6104 5964 581 331 80 7 chr12 46776748 46777023 -97009432 - L3 LINE CR1 -38 1539 1245 820 235 0 6 chr12 46777535 46777697 -97008758 - FAM SINE Alu -13 162 2 462 246 60 60 chr12 46777766 46778034 -97008421 + L1ME4a LINE L1 5568 5835 -286 182 171 29 0 chr12 46779066 46779101 -97007354 + MIR SINE MIR 49 84 -178 718 190 0 7 chr12 46779103 46779240 -97007215 - FLAM_C SINE Alu -7 136 1 253 268 0 0 chr12 46779329 46779385 -97007070 + L2 LINE L2 3258 3313 0 557 220 21 58 chr12 46779430 46779621 -97006834 + L2 LINE L2 3124 3307 -6 2298 107 0 0 chr12 46779719 46780017 -97006438 + AluSx SINE Alu 1 298 -14 379 244 41 16 chr12 46780520 46780643 -97005812 + L2 LINE L2 3183 3308 -5 2193 75 20 14 chr12 46781579 46781873 -97004582 + AluSx SINE Alu 1 296 -16 282 313 88 31 chr12 46782290 46782482 -97003973 - MIR SINE MIR -51 211 9 21 0 0 0 chr12 46782922 46782943 -97003512 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 46784081 46784102 -97002353 + AT_rich Low_complexity Low_complexity 1 21 0 2053 103 23 23 chr12 46784246 46784547 -97001908 + AluSx SINE Alu 1 301 -11 953 136 34 11 chr12 46784666 46784842 -97001613 + MER101B LTR ERV1 1 180 -390 496 266 47 8 chr12 46784991 46785119 -97001336 + L2 LINE L2 3167 3299 -14 373 222 0 102 chr12 46785343 46785451 -97001004 - MIR3 SINE MIR -39 169 73 2503 153 45 40 chr12 46785720 46785838 -97000617 + LTR49 LTR ERV1 1 117 -478 3295 141 32 80 chr12 46785838 46786560 -96999895 - LTR8 LTR ERV1 0 691 5 2503 153 45 40 chr12 46786560 46786995 -96999460 + LTR49 LTR ERV1 117 557 -38 3510 194 75 3 chr12 46787039 46787750 -96998705 + LTR49-int LTR ERV1 33 794 -5537 3065 101 41 39 chr12 46787753 46788142 -96998313 + MER41A LTR ERV1 19 411 -143 2394 86 10 0 chr12 46788142 46788445 -96998010 - AluSg SINE Alu -4 306 1 3065 101 41 39 chr12 46788445 46788590 -96997865 + MER41A LTR ERV1 411 554 0 189 0 0 0 chr12 46788601 46788622 -96997833 + (T)n Simple_repeat Simple_repeat 1 21 0 2549 179 71 73 chr12 46788625 46788818 -96997637 + LTR49-int LTR ERV1 807 999 -5332 279 0 0 0 chr12 46788818 46788849 -96997606 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2549 179 71 73 chr12 46788849 46789344 -96997111 + LTR49-int LTR ERV1 999 1494 -4837 1544 97 87 128 chr12 46789344 46789680 -96996775 + AluSx SINE Alu 1 324 0 2549 179 71 73 chr12 46789680 46790709 -96995746 + LTR49-int LTR ERV1 1494 2714 -3617 186 43 0 0 chr12 46790709 46790732 -96995723 + (TTTC)n Simple_repeat Simple_repeat 3 25 0 848 182 0 0 chr12 46790733 46790865 -96995590 - AluSq/x SINE Alu -181 132 1 12388 140 37 57 chr12 46790865 46793660 -96992795 + LTR49-int LTR ERV1 2696 5436 -895 307 175 42 150 chr12 46794037 46794157 -96992298 + MIR3 SINE MIR 67 173 -35 384 303 25 110 chr12 46795660 46796023 -96990432 - L2 LINE L2 -9 3263 2932 2327 113 3 0 chr12 46796063 46796372 -96990083 - AluSx SINE Alu -2 310 1 2531 67 0 13 chr12 46796617 46796930 -96989525 - AluY SINE Alu -2 309 1 2185 94 24 0 chr12 46797153 46797440 -96989015 - AluSx SINE Alu -18 294 1 22 0 0 0 chr12 46797450 46797472 -96988983 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 46797942 46797970 -96988485 + AT_rich Low_complexity Low_complexity 1 28 0 1936 132 11 0 chr12 46798138 46798454 -96988001 + AluSq SINE Alu 1 319 0 1117 154 91 5 chr12 46798997 46799205 -96987250 - Tigger1 DNA MER2_type -2189 229 4 575 199 22 52 chr12 46799369 46799505 -96986950 - AluJo SINE Alu -178 134 3 1891 147 3 10 chr12 46799520 46799833 -96986622 - AluY SINE Alu 0 311 1 2263 92 0 36 chr12 46800671 46800977 -96985478 - AluSx SINE Alu -17 295 1 296 171 80 68 chr12 46801436 46801524 -96984931 + L2 LINE L2 3225 3313 0 363 337 54 24 chr12 46801829 46801864 -96984591 - MIR SINE MIR -6 256 223 2272 100 3 10 chr12 46801864 46802173 -96984282 - AluSq SINE Alu -6 307 1 363 337 54 24 chr12 46802173 46802342 -96984113 - MIR SINE MIR -39 223 46 323 270 294 0 chr12 46802470 46802596 -96983859 + MER5A DNA MER1_type 26 188 -1 372 307 102 0 chr12 46803193 46803330 -96983125 + MIR SINE MIR 65 215 -47 210 71 0 0 chr12 46803365 46803393 -96983062 + (TTA)n Simple_repeat Simple_repeat 1 28 0 201 121 0 0 chr12 46803942 46803975 -96982480 + (T)n Simple_repeat Simple_repeat 1 33 0 201 213 16 49 chr12 46806456 46806517 -96979938 - L2 LINE L2 -1 3271 3213 366 240 39 19 chr12 46806702 46806806 -96979649 + FLAM_A SINE Alu 24 129 -4 414 262 169 35 chr12 46807217 46807389 -96979066 + MIR SINE MIR 20 214 -48 2193 121 0 3 chr12 46808466 46808771 -96977684 - AluSq SINE Alu -9 304 1 2167 115 0 3 chr12 46809665 46809970 -96976485 - AluSq SINE Alu -8 305 2 400 309 56 0 chr12 46809972 46810098 -96976357 - MIR SINE MIR -113 149 17 480 216 23 23 chr12 46810136 46810290 -96976165 - MIR SINE MIR -66 142 3 2394 47 3 14 chr12 46810335 46810632 -96975823 - AluY SINE Alu -17 294 1 1297 134 131 37 chr12 46810692 46810990 -96975465 + MER1B DNA MER1_type 4 329 -10 681 255 49 71 chr12 46811617 46811806 -96974649 - MIR SINE MIR -1 261 78 3616 183 65 56 chr12 46811806 46812657 -96973798 - MER21B LTR ERV1 -3 860 3 681 255 49 71 chr12 46812657 46812734 -96973721 - MIR SINE MIR -184 78 1 1971 138 3 3 chr12 46812819 46813109 -96973346 + AluSg SINE Alu 2 291 -19 378 0 0 0 chr12 46813327 46813369 -96973086 + (TG)n Simple_repeat Simple_repeat 2 43 0 2269 123 0 0 chr12 46813374 46813674 -96972781 - AluSx SINE Alu -12 300 1 1286 171 0 0 chr12 46814204 46814403 -96972052 - AluJb SINE Alu -113 199 1 21 0 0 0 chr12 46816290 46816311 -96970144 + AT_rich Low_complexity Low_complexity 1 21 0 326 300 80 90 chr12 46816418 46816905 -96969550 + L1M2 LINE L1 512 993 -5856 237 224 0 0 chr12 46819152 46819210 -96967245 + GA-rich Low_complexity Low_complexity 3 60 0 574 188 111 17 chr12 46820013 46820130 -96966325 + FLAM_A SINE Alu 8 135 -7 270 0 0 0 chr12 46823341 46823371 -96963084 + (CA)n Simple_repeat Simple_repeat 2 31 0 1703 99 13 26 chr12 46823588 46823821 -96962634 + MER30 DNA MER1_type 1 230 0 2224 83 28 3 chr12 46824757 46825047 -96961408 - AluSx SINE Alu -15 297 1 1951 260 71 51 chr12 46825099 46825641 -96960814 - HAL1 LINE L1 -831 1676 1146 2412 79 0 3 chr12 46825641 46825946 -96960509 - AluY SINE Alu -7 304 1 1951 260 71 51 chr12 46825946 46826780 -96959675 - HAL1 LINE L1 -1361 1146 57 3480 118 0 4 chr12 46826883 46827375 -96959080 - L1P LINE L1 -5656 490 1 2198 203 18 0 chr12 46827603 46827997 -96958458 + MER57A LTR ERV1 3 403 0 215 314 78 29 chr12 46830178 46830280 -96956175 - L2 LINE L2 -13 3259 3153 1596 183 3 13 chr12 46830402 46830702 -96955753 + AluJo SINE Alu 13 309 -3 1999 122 14 10 chr12 46831657 46831953 -96954502 + AluSx SINE Alu 1 297 -15 394 160 50 101 chr12 46831961 46832080 -96954375 + MER103 DNA DNA 11 123 -43 192 135 0 0 chr12 46832702 46832739 -96953716 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 270 0 0 0 chr12 46833176 46833206 -96953249 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4482 116 19 11 chr12 46833802 46834432 -96952023 - MER41B LTR ERV1 0 635 1 336 250 98 38 chr12 46834574 46834706 -96951749 - L2 LINE L2 -2 3311 3172 744 214 65 0 chr12 46836350 46836504 -96949951 + MER53 DNA DNA 26 189 0 1463 154 135 12 chr12 46836756 46837036 -96949419 + AluJb SINE Alu 2 302 0 1622 185 0 17 chr12 46837749 46838036 -96948419 - AluJb SINE Alu -17 295 14 2275 82 0 10 chr12 46838111 46838438 -96948017 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 46838505 46838526 -96947929 + AT_rich Low_complexity Low_complexity 1 21 0 2291 98 10 3 chr12 46840084 46840390 -96946065 - AluSq SINE Alu -5 308 1 2267 105 3 10 chr12 46840430 46840744 -96945711 - AluSx SINE Alu 0 312 1 322 280 67 0 chr12 46841230 46841305 -96945150 - L2 LINE L2 -19 3253 3174 365 136 39 19 chr12 46841449 46841552 -96944903 + GA-rich Low_complexity Low_complexity 4 108 0 227 347 31 10 chr12 46841635 46841733 -96944722 + MER5B DNA MER1_type 2 101 -77 304 253 51 13 chr12 46841780 46841859 -96944596 - MIR3 SINE MIR -48 160 79 1761 181 3 3 chr12 46842171 46842469 -96943986 - AluJb SINE Alu -13 299 2 3954 127 34 32 chr12 46842478 46843218 -96943237 - pTR5 LTR ERV1 0 2438 382 712 144 0 10 chr12 46843336 46843440 -96943015 + AluSp/q SINE Alu 195 297 -16 1797 143 10 13 chr12 46843656 46843956 -96942499 - AluSq SINE Alu -14 299 1 25 0 0 0 chr12 46843965 46843990 -96942465 + AT_rich Low_complexity Low_complexity 1 25 0 1029 162 0 0 chr12 46843992 46844146 -96942309 - AluJb SINE Alu -30 282 129 261 200 14 57 chr12 46844689 46844759 -96941696 + L2 LINE L2 3210 3276 -37 22 35 0 0 chr12 46844901 46844930 -96941525 + AT_rich Low_complexity Low_complexity 1 29 0 1475 142 36 4 chr12 46845000 46845247 -96941208 + L1MA2 LINE L1 6050 6304 0 902 184 0 18 chr12 46845592 46845755 -96940700 + FRAM SINE Alu 5 164 -2 1446 190 4 27 chr12 46845875 46846005 -96940450 - AluJo SINE Alu -50 262 139 2050 115 3 20 chr12 46846005 46846322 -96940133 - AluSx SINE Alu 0 312 2 1446 190 4 27 chr12 46846322 46846454 -96940001 - AluJo SINE Alu -173 139 6 270 47 0 70 chr12 46846466 46846509 -96939946 + L1MA9 LINE L1 6273 6312 0 418 364 26 26 chr12 46846510 46846670 -96939785 - MLT1K LTR MaLR -153 435 273 2180 174 64 2 chr12 46846670 46847079 -96939376 + MER63B DNA MER1_type 1 434 -2 418 364 26 26 chr12 46847079 46847187 -96939268 - MLT1K LTR MaLR -314 274 167 254 279 0 0 chr12 46847374 46847435 -96939020 + MER94 DNA DNA 40 100 -34 269 302 43 43 chr12 46847447 46847563 -96938892 - MIR SINE MIR -70 138 23 1191 160 0 0 chr12 46849357 46849532 -96936923 - AluJb SINE Alu -11 301 127 1898 101 4 0 chr12 46850416 46850663 -96935792 - AluSq SINE Alu -65 248 1 256 286 32 0 chr12 46850956 46851019 -96935436 + L2 LINE L2 3202 3266 -6 25 31 0 0 chr12 46851185 46851217 -96935238 + AT_rich Low_complexity Low_complexity 1 32 0 359 289 97 7 chr12 46851557 46851735 -96934720 - MIR SINE MIR -51 157 12 209 344 77 15 chr12 46851804 46851999 -96934456 + L2 LINE L2 2364 2570 -744 322 262 90 75 chr12 46852448 46852727 -96933728 + L1ME4a LINE L1 5823 6105 -16 230 246 16 0 chr12 46854157 46854218 -96932237 + (CA)n Simple_repeat Simple_repeat 2 63 0 252 229 0 33 chr12 46854295 46854356 -96932099 - MIR SINE MIR -130 78 20 464 299 87 82 chr12 46854671 46855075 -96931380 + L2 LINE L2 2851 3256 -16 405 287 146 18 chr12 46855552 46855716 -96930739 + MIR3 SINE MIR 20 204 -4 27 29 0 0 chr12 46856194 46856228 -96930227 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr12 46856754 46856774 -96929681 + (T)n Simple_repeat Simple_repeat 1 20 0 1928 126 7 0 chr12 46858303 46858604 -96927851 + AluSx SINE Alu 3 305 0 213 296 52 69 chr12 46858711 46858944 -96927511 - L2 LINE L2 -217 3055 2827 182 163 0 23 chr12 46858991 46859034 -96927421 - L2 LINE L2 -927 2387 2346 365 287 83 0 chr12 46859628 46859736 -96926719 + L2 LINE L2 3175 3291 -22 23 0 0 0 chr12 46862653 46862676 -96923779 + AT_rich Low_complexity Low_complexity 1 23 0 2161 112 3 3 chr12 46862698 46863003 -96923452 - AluSq SINE Alu -8 305 1 1586 148 0 16 chr12 46864396 46864653 -96921802 - AluSq SINE Alu 0 313 61 180 240 60 40 chr12 46864873 46864923 -96921532 - L2 LINE L2 -18 3295 3245 414 292 33 8 chr12 46865060 46865180 -96921275 + MIR SINE MIR 32 154 -108 1861 160 3 3 chr12 46865410 46865698 -96920757 - AluJb SINE Alu -24 288 1 1161 172 0 0 chr12 46865917 46866097 -96920358 - L1PB4 LINE L1 -4 6152 5973 236 293 37 30 chr12 46866211 46866375 -96920080 - L1MC4a LINE L1 -1877 5931 5767 354 198 17 21 chr12 46866801 46866902 -96919553 + MIR SINE MIR 102 200 -62 2504 61 7 3 chr12 46866916 46867226 -96919229 + AluY SINE Alu 1 311 0 203 241 170 45 chr12 46867589 46867701 -96918754 + L2 LINE L2 3171 3296 -17 246 196 0 0 chr12 46867867 46867913 -96918542 + MER94 DNA DNA 4 49 -85 881 225 0 0 chr12 46868082 46868242 -96918213 + FRAM SINE Alu 3 162 -4 2242 109 3 3 chr12 46868556 46868859 -96917596 + AluSq SINE Alu 1 303 -10 635 160 0 118 chr12 46868867 46869011 -96917444 + FLAM_A SINE Alu 1 127 -6 354 297 260 10 chr12 46869644 46869836 -96916619 - MIR SINE MIR -3 259 20 233 385 33 28 chr12 46870073 46870255 -96916200 + MLT1K LTR MaLR 15 197 -391 2011 123 16 3 chr12 46870587 46870895 -96915560 + AluSq SINE Alu 1 312 -1 2085 123 3 19 chr12 46872074 46872382 -96914073 - AluSx SINE Alu -9 303 1 25 0 0 0 chr12 46872391 46872416 -96914039 + AT_rich Low_complexity Low_complexity 1 25 0 1029 162 0 0 chr12 46872418 46872572 -96913883 - AluJb SINE Alu -30 282 129 263 217 14 43 chr12 46873115 46873184 -96913271 + L2 LINE L2 3210 3276 -37 30 0 0 0 chr12 46873327 46873357 -96913098 + AT_rich Low_complexity Low_complexity 1 30 0 1762 93 37 0 chr12 46873424 46873670 -96912785 + L1MA2 LINE L1 6050 6304 0 1005 196 0 0 chr12 46874011 46874214 -96912241 + FRAM SINE Alu 1 68 0 16002 114 41 20 chr12 46874232 46874823 -96911632 - Tigger1 DNA MER2_type 0 2418 1841 2318 113 0 0 chr12 46874823 46875123 -96911332 + AluSx SINE Alu 1 300 -12 16002 114 41 20 chr12 46875123 46875189 -96911266 - Tigger1 DNA MER2_type -577 1841 1778 1359 136 45 129 chr12 46875189 46875390 -96911065 - AluJo SINE Alu -8 304 140 1610 169 65 7 chr12 46875390 46875505 -96910950 + AluJb SINE Alu 6 113 -199 261 0 0 0 chr12 46875505 46875534 -96910921 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1610 169 65 7 chr12 46875534 46875697 -96910758 + AluJb SINE Alu 113 300 -12 1359 136 45 129 chr12 46875697 46875827 -96910628 - AluJo SINE Alu -172 140 1 16002 114 41 20 chr12 46875827 46875882 -96910573 - Tigger1 DNA MER2_type -640 1778 1726 2163 95 10 16 chr12 46875882 46876188 -96910267 - AluSx SINE Alu -8 304 1 16002 114 41 20 chr12 46876188 46877559 -96908896 - Tigger1 DNA MER2_type -692 1726 276 2428 66 7 13 chr12 46877559 46877862 -96908593 + AluY SINE Alu 1 301 -10 16002 114 41 20 chr12 46877862 46878141 -96908314 - Tigger1 DNA MER2_type -2142 276 4 667 197 15 51 chr12 46878305 46878442 -96908013 - AluJo SINE Alu -178 134 3 1853 169 3 6 chr12 46878456 46878769 -96907686 - AluJb SINE Alu 0 312 1 835 162 0 37 chr12 46878797 46878933 -96907522 + AluJb SINE Alu 2 132 -180 418 304 172 0 chr12 46879412 46879616 -96906839 - MIR SINE MIR -13 249 11 2245 109 17 0 chr12 46879722 46880016 -96906439 - AluSx SINE Alu -13 299 1 1956 100 0 76 chr12 46880021 46880346 -96906109 - AluSx SINE Alu 0 306 5 186 43 0 0 chr12 46880959 46880982 -96905473 + (T)n Simple_repeat Simple_repeat 1 23 0 2262 103 0 22 chr12 46881527 46881838 -96904617 + AluSc SINE Alu 1 304 -5 210 222 0 0 chr12 46882439 46882493 -96903962 + (TA)n Simple_repeat Simple_repeat 1 54 0 310 296 0 0 chr12 46882503 46882591 -96903864 - L1MC4 LINE L1 -1342 6700 6613 1913 154 0 11 chr12 46882594 46882903 -96903552 - AluJo SINE Alu 0 306 1 23 0 0 0 chr12 46882909 46882932 -96903523 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 46883534 46883556 -96902899 + AT_rich Low_complexity Low_complexity 1 22 0 2331 114 0 0 chr12 46885480 46885787 -96900668 - AluSx SINE Alu -5 307 1 872 84 71 97 chr12 46886285 46886440 -96900015 + MER46B DNA MER2_type 1 26 -210 803 196 0 8 chr12 46886440 46886573 -96899882 + FLAM_C SINE Alu 1 132 -11 1403 140 5 0 chr12 46886591 46886812 -96899643 + MER46B DNA MER2_type 15 236 0 424 294 28 39 chr12 46886993 46887173 -96899282 - MIR SINE MIR -61 201 24 187 271 21 0 chr12 46887412 46887460 -96898995 + L3 LINE CR1 1521 1569 -8 1886 139 0 0 chr12 46887854 46888120 -96898335 - AluSx SINE Alu -12 300 35 207 200 0 0 chr12 46888714 46888759 -96897696 + (TA)n Simple_repeat Simple_repeat 2 46 0 2267 104 3 3 chr12 46888759 46889058 -96897397 - AluSx SINE Alu -13 299 1 22 0 0 0 chr12 46889628 46889650 -96896805 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 46890239 46890262 -96896193 + AT_rich Low_complexity Low_complexity 1 23 0 1651 176 25 0 chr12 46890298 46890576 -96895879 + AluJb SINE Alu 1 285 -27 420 20 0 0 chr12 46890697 46890746 -96895709 + (TA)n Simple_repeat Simple_repeat 1 49 0 235 250 0 0 chr12 46890907 46890951 -96895504 - MIR SINE MIR -116 146 103 194 256 23 0 chr12 46891017 46891060 -96895395 - L2 LINE L2 -13 3259 3216 2257 109 0 25 chr12 46891227 46891547 -96894908 + AluSx SINE Alu 1 312 0 207 100 0 0 chr12 46891809 46891839 -96894616 + (CAT)n Simple_repeat Simple_repeat 1 30 0 659 254 48 75 chr12 46892753 46892943 -96893512 - MIR SINE MIR -1 261 78 4105 177 63 57 chr12 46892943 46893796 -96892659 - MER21B LTR ERV1 -3 860 3 659 254 48 75 chr12 46893796 46893873 -96892582 - MIR SINE MIR -184 78 1 2115 110 7 7 chr12 46893958 46894258 -96892197 + AluSg SINE Alu 2 301 -9 2331 72 0 23 chr12 46895402 46895706 -96890749 + AluY SINE Alu 1 297 -14 26 0 0 0 chr12 46896136 46896162 -96890293 + AT_rich Low_complexity Low_complexity 1 26 0 583 202 46 0 chr12 46896279 46896388 -96890067 + FLAM_A SINE Alu 12 125 -17 2331 94 7 0 chr12 46896393 46896691 -96889764 + AluSq SINE Alu 1 300 -13 360 0 0 0 chr12 46896696 46896736 -96889719 + (CA)n Simple_repeat Simple_repeat 2 41 0 2059 122 0 3 chr12 46896954 46897240 -96889215 - AluJb SINE Alu -19 293 9 25 51 0 0 chr12 46897400 46897439 -96889016 + AT_rich Low_complexity Low_complexity 1 39 0 2263 112 0 16 chr12 46897464 46897777 -96888678 - AluSx SINE Alu -4 308 1 557 309 26 11 chr12 46898114 46898305 -96888150 - MIR SINE MIR -41 221 28 241 135 0 0 chr12 46898490 46898527 -96887928 + MER94 DNA DNA 13 49 -85 881 225 0 0 chr12 46898696 46898856 -96887599 + FRAM SINE Alu 3 162 -4 2199 119 3 3 chr12 46899170 46899480 -96886975 + AluSx SINE Alu 1 310 -2 1257 176 0 0 chr12 46900321 46900520 -96885935 + AluJb SINE Alu 1 199 -113 2545 227 121 75 chr12 46901028 46901053 -96885402 + HAL1 LINE L1 2 24 -2483 2528 78 0 0 chr12 46901053 46901362 -96885093 + AluY SINE Alu 1 309 -2 2545 227 121 75 chr12 46901362 46902237 -96884218 + HAL1 LINE L1 24 1160 -1347 2412 79 0 3 chr12 46902237 46902542 -96883913 + AluY SINE Alu 1 304 -7 2545 227 121 75 chr12 46902542 46903084 -96883371 + HAL1 LINE L1 1160 1676 -831 2275 82 27 3 chr12 46903136 46903428 -96883027 + AluSq SINE Alu 1 299 -14 1563 158 39 25 chr12 46903443 46903727 -96882728 + AluSx SINE Alu 1 288 -24 513 0 0 0 chr12 46903728 46903785 -96882670 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 499 227 184 22 chr12 46903789 46903974 -96882481 + HAL1 LINE L1 2288 2502 -5 2011 131 0 3 chr12 46904655 46904938 -96881517 - AluSq SINE Alu -10 303 22 22 0 0 0 chr12 46904962 46904984 -96881471 + AT_rich Low_complexity Low_complexity 1 22 0 873 196 0 13 chr12 46905094 46905252 -96881203 - FAM SINE Alu -14 171 16 536 227 85 43 chr12 46905260 46905401 -96881054 - L2 LINE L2 -4 3309 3163 2012 103 15 4 chr12 46905412 46905683 -96880772 + AluSq SINE Alu 3 276 -37 234 62 0 0 chr12 46905687 46905719 -96880736 + (TAA)n Simple_repeat Simple_repeat 3 34 0 636 114 0 0 chr12 46905751 46905839 -96880616 + Tigger1 DNA MER2_type 1009 1096 -1322 1159 137 0 0 chr12 46905841 46906009 -96880446 + AluSg/x SINE Alu 128 295 -15 290 225 8 75 chr12 46906016 46906136 -96880319 - L2 LINE L2 -150 3163 3052 2028 125 0 17 chr12 46906194 46906489 -96879966 + AluSx SINE Alu 1 290 -22 738 182 0 56 chr12 46908112 46908255 -96878200 - FLAM_C SINE Alu -6 137 3 793 130 0 0 chr12 46908275 46908383 -96878072 + AluY SINE Alu 1 108 -203 2165 113 3 0 chr12 46908566 46908857 -96877598 - AluSg SINE Alu -18 292 1 186 43 0 0 chr12 46908956 46908979 -96877476 + (TTA)n Simple_repeat Simple_repeat 1 23 0 249 94 0 0 chr12 46908981 46909013 -96877442 - Alu SINE Alu -20 113 82 224 325 181 25 chr12 46909021 46909181 -96877274 - L2 LINE L2 0 3272 3088 342 242 226 0 chr12 46909712 46909836 -96876619 - MIR3 SINE MIR 0 208 57 2304 97 13 0 chr12 46911778 46912078 -96874377 + AluSg1 SINE Alu 1 304 -5 2277 114 0 0 chr12 46912086 46912393 -96874062 + AluSx SINE Alu 1 307 -5 364 323 2 22 chr12 46912688 46912841 -96873614 + MER5A DNA MER1_type 1 161 -28 1742 138 0 0 chr12 46912901 46913140 -96873315 + AluSx SINE Alu 1 239 -73 2449 80 3 0 chr12 46913262 46913562 -96872893 + AluSp SINE Alu 1 301 -12 23 78 0 0 chr12 46913598 46913649 -96872806 + AT_rich Low_complexity Low_complexity 1 51 0 2048 144 16 0 chr12 46914415 46914721 -96871734 - AluSx SINE Alu -1 311 1 210 276 102 39 chr12 46914782 46914909 -96871546 - MIR3 SINE MIR -48 160 26 781 258 164 24 chr12 46916078 46916376 -96870079 - L2 LINE L2 0 3313 2974 234 0 0 0 chr12 46917215 46917241 -96869214 + (A)n Simple_repeat Simple_repeat 1 26 0 270 0 0 0 chr12 46918433 46918463 -96867992 + (T)n Simple_repeat Simple_repeat 1 30 0 692 171 9 0 chr12 46922045 46922156 -96864299 - FLAM_A SINE Alu -18 124 13 2228 109 10 0 chr12 46922506 46922799 -96863656 - AluSq SINE Alu -16 297 2 406 210 40 48 chr12 46924370 46924494 -96861961 + L1MC4 LINE L1 7919 8041 -1 198 0 0 0 chr12 46924940 46924962 -96861493 + (TA)n Simple_repeat Simple_repeat 2 23 0 272 206 0 22 chr12 46924962 46925054 -96861401 - L1MC4 LINE L1 -1339 6703 6614 2264 92 4 0 chr12 46925074 46925375 -96861080 - AluSp SINE Alu 0 302 1 1667 155 7 22 chr12 46925516 46925787 -96860668 + AluJb SINE Alu 1 267 -45 1098 76 0 0 chr12 46925850 46925982 -96860473 + AluSp SINE Alu 1 132 -181 1595 100 5 0 chr12 46925984 46926184 -96860271 + AluSp SINE Alu 1 201 -112 1323 201 10 24 chr12 46926307 46926596 -96859859 - AluSq SINE Alu -28 285 1 229 151 143 111 chr12 46926941 46927067 -96859388 + MIR SINE MIR 61 145 -63 2426 86 0 0 chr12 46928113 46928416 -96858039 - AluSg SINE Alu -7 303 1 240 268 111 0 chr12 46928658 46928763 -96857692 + MIR3 SINE MIR 63 178 -30 217 196 0 78 chr12 46930814 46930865 -96855590 + L2 LINE L2 3213 3259 -13 2368 77 0 0 chr12 46931487 46931772 -96854683 - AluSx SINE Alu -16 296 12 383 90 104 15 chr12 46933940 46934007 -96852448 - MADE1 DNA Mariner 0 80 8 295 230 48 73 chr12 46934070 46934235 -96852220 + L1ME4a LINE L1 5876 6036 -85 1558 213 13 5 chr12 46934263 46934602 -96851853 - L1MD3 LINE L1 -10 7985 7560 1236 134 13 38 chr12 46934629 46934868 -96851587 - AluSq SINE Alu 0 313 81 1538 146 4 24 chr12 46935490 46935743 -96850712 - AluSq SINE Alu -65 248 1 2409 87 0 3 chr12 46935788 46936097 -96850358 + AluSc SINE Alu 2 309 0 1142 152 14 33 chr12 46936103 46936313 -96850142 + AluJo SINE Alu 84 289 -23 508 100 12 12 chr12 46937090 46937170 -96849285 - L1ME2 LINE L1 0 6164 6085 2921 210 42 24 chr12 46937177 46937816 -96848639 + MER82 DNA MER2_type 2 652 -1 2209 101 28 0 chr12 46938880 46939168 -96847287 + AluSx SINE Alu 1 296 -16 1518 102 0 28 chr12 46939469 46939684 -96846771 - AluSq SINE Alu -19 294 86 603 153 56 49 chr12 46939693 46939837 -96846618 + THE1C LTR MaLR 227 371 -4 849 135 55 15 chr12 46939974 46940174 -96846281 + AluSq SINE Alu 2 209 -104 32 0 0 0 chr12 46940871 46940903 -96845552 + AT_rich Low_complexity Low_complexity 1 32 0 2074 73 0 4 chr12 46941100 46941361 -96845094 - AluY SINE Alu -7 304 45 22 0 0 0 chr12 46941377 46941399 -96845056 + AT_rich Low_complexity Low_complexity 1 22 0 388 313 36 18 chr12 46941571 46941737 -96844718 + L2 LINE L2 2725 2893 -421 272 200 125 12 chr12 46942084 46942164 -96844291 - MIR SINE MIR -49 213 125 290 120 0 0 chr12 46942164 46942214 -96844241 + L1MA7 LINE L1 6242 6291 0 2369 103 0 0 chr12 46942400 46942700 -96843755 - AluSx SINE Alu -12 300 1 1129 139 0 12 chr12 46943638 46943804 -96842651 - AluSg/x SINE Alu -14 298 135 350 193 0 12 chr12 46943808 46943891 -96842564 + CT-rich Low_complexity Low_complexity 3 84 0 225 0 0 0 chr12 46944509 46944534 -96841921 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1984 127 0 4 chr12 46944534 46944809 -96841646 - AluSx SINE Alu -32 280 7 30 27 0 0 chr12 46946486 46946523 -96839932 + AT_rich Low_complexity Low_complexity 1 37 0 2208 125 3 0 chr12 46946847 46947144 -96839311 - AluSx SINE Alu -14 298 1 2212 89 12 49 chr12 46948190 46948208 -96838247 - AluSq SINE Alu 0 313 296 522 0 0 0 chr12 46948208 46948266 -96838189 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2212 89 12 49 chr12 46948266 46948572 -96837883 - AluSq SINE Alu -17 296 1 1829 105 102 44 chr12 46948676 46948971 -96837484 - AluSq SINE Alu -1 312 1 252 310 70 56 chr12 46949011 46949153 -96837302 - MIR SINE MIR -72 190 47 2291 119 0 3 chr12 46949508 46949811 -96836644 + AluSx SINE Alu 1 302 -10 2463 65 0 0 chr12 46949912 46950202 -96836253 + AluY SINE Alu 1 290 -21 781 176 198 5 chr12 46950403 46950590 -96835865 - MER58A DNA MER1_type 0 224 2 2141 110 4 0 chr12 46950829 46951138 -96835317 + AluSp SINE Alu 1 310 0 351 284 101 20 chr12 46954415 46954563 -96831892 - L1MC/D LINE L1 -2182 5626 5467 2297 106 0 10 chr12 46954805 46955117 -96831338 - AluSq SINE Alu -3 310 2 1718 109 106 43 chr12 46955254 46955603 -96830852 - THE1C LTR MaLR -4 371 1 2260 102 6 10 chr12 46955729 46956043 -96830412 - AluSp SINE Alu 0 313 1 2241 108 0 19 chr12 46956075 46956391 -96830064 + AluSg SINE Alu 1 310 0 2155 109 30 3 chr12 46956614 46956916 -96829539 - AluSg SINE Alu 0 310 1 877 20 0 0 chr12 46957200 46957300 -96829155 - HY3 scRNA scRNA -1 100 1 2375 69 14 0 chr12 46957311 46957599 -96828856 - AluSx SINE Alu -20 292 1 454 292 141 0 chr12 46957653 46957838 -96828617 - Charlie8 DNA MER1_type -2206 211 1 1160 121 25 0 chr12 46957958 46958115 -96828340 - AluSx SINE Alu -151 161 1 636 192 0 0 chr12 46958218 46958343 -96828112 + AluSp/q SINE Alu 177 301 -12 21 0 0 0 chr12 46958403 46958424 -96828031 + AT_rich Low_complexity Low_complexity 1 21 0 705 92 0 118 chr12 46958494 46958613 -96827842 - FLAM_C SINE Alu -36 107 3 2165 144 0 0 chr12 46959083 46959395 -96827060 - AluSx SINE Alu 0 312 1 199 284 81 14 chr12 46959641 46959715 -96826740 - MIR3 SINE MIR -10 198 120 2327 101 0 3 chr12 46959925 46960222 -96826233 + AluSq SINE Alu 1 296 -17 800 195 24 24 chr12 46960231 46960400 -96826055 - AluJo SINE Alu -20 292 124 689 155 35 0 chr12 46960539 46960655 -96825800 + AluJb SINE Alu 170 289 -23 327 25 0 0 chr12 46960657 46960697 -96825758 + (CA)n Simple_repeat Simple_repeat 1 40 0 233 276 13 0 chr12 46960983 46961059 -96825396 - MLT1J LTR MaLR -23 488 412 239 239 144 75 chr12 46961136 46961294 -96825161 - MLT1J2 LTR MaLR -183 226 62 424 257 11 7 chr12 46961705 46961821 -96824634 - HERVL LTR ERVL -3810 1844 1758 3124 160 136 21 chr12 46962344 46962645 -96823810 - MER44D DNA MER2_type -1882 705 440 1937 114 37 4 chr12 46962645 46962916 -96823539 - AluSx SINE Alu -18 294 15 3124 160 136 21 chr12 46962916 46963246 -96823209 - MER44D DNA MER2_type -2147 440 1 26 0 0 0 chr12 46964765 46964791 -96821664 + AT_rich Low_complexity Low_complexity 1 26 0 1768 196 60 51 chr12 46964855 46965309 -96821146 - LTR22A LTR ERVK 0 458 1 1643 133 0 8 chr12 46965312 46965553 -96820902 - HERVK22 LTR ERVK -4 6833 6595 * 21218 91 14 16 chr12 46965542 46968446 -96818009 - HERVK22 LTR ERVK -1538 5299 2403 5956 129 18 3 chr12 46968457 46969346 -96817109 - HERVK22 LTR ERVK -5932 905 4 2040 194 22 35 chr12 46969349 46969813 -96816642 - LTR22A LTR ERVK 0 458 1 983 104 8 0 chr12 46970192 46970326 -96816129 + AluSq/x SINE Alu 1 135 -178 1208 146 0 5 chr12 46971133 46971318 -96815137 + AluSx SINE Alu 1 184 -128 639 204 9 0 chr12 46971318 46971431 -96815024 + MLT1D LTR MaLR 299 412 -93 746 227 61 0 chr12 46971431 46971629 -96814826 + L1MC2 LINE L1 2680 2889 -3257 724 218 65 35 chr12 46971615 46971876 -96814579 + L1MC2 LINE L1 4239 4507 -1639 * 23 33 0 0 chr12 46971876 46971906 -96814549 + AT_rich Low_complexity Low_complexity 1 30 0 4880 169 39 84 chr12 46971908 46972197 -96814258 + L1MC2 LINE L1 4470 4770 -1574 1938 99 7 42 chr12 46972197 46972513 -96813942 + AluSx SINE Alu 11 316 0 4880 169 39 84 chr12 46972513 46973110 -96813345 + L1MC2 LINE L1 4770 5392 -952 2312 99 0 6 chr12 46973110 46973422 -96813033 + AluSg SINE Alu 1 310 0 4880 169 39 84 chr12 46973422 46974498 -96811957 + L1MC2 LINE L1 5392 6339 -5 370 214 56 22 chr12 46974565 46974654 -96811801 + MIR SINE MIR 154 245 -17 1376 190 65 0 chr12 46975063 46975310 -96811145 + Tigger7 DNA MER2_type 1 263 -470 549 159 11 0 chr12 46975315 46975403 -96811052 + Tigger7 DNA MER2_type 2492 2580 -7 203 349 64 9 chr12 46975477 46975586 -96810869 - L2 LINE L2 -940 2374 2260 223 268 210 6 chr12 46975799 46975956 -96810499 - L2 LINE L2 -1268 2046 1858 747 180 148 6 chr12 46975963 46976146 -96810309 - MER3 DNA MER1_type 0 209 1 2158 115 3 0 chr12 46977019 46977323 -96809132 + AluSx SINE Alu 1 305 -7 747 216 68 11 chr12 46977436 46977626 -96808829 - MER21B LTR ERV1 -187 676 476 1577 104 5 0 chr12 46977648 46977870 -96808585 - L1PA11 LINE L1 -100 6074 5852 719 235 62 28 chr12 46977876 46978055 -96808400 - MER21B LTR ERV1 -379 484 300 22 0 0 0 chr12 46978055 46978077 -96808378 + AT_rich Low_complexity Low_complexity 1 22 0 1471 147 45 4 chr12 46978142 46978387 -96808068 + Tigger2a DNA MER2_type 1 255 -179 1888 92 4 4 chr12 46978390 46978640 -96807815 + AluY SINE Alu 1 250 -61 1891 101 54 25 chr12 46981218 46981524 -96804931 + AluSq SINE Alu 1 314 0 778 194 65 54 chr12 46981524 46981710 -96804745 + Tigger2a DNA MER2_type 257 444 0 192 143 0 0 chr12 46981715 46981757 -96804698 + (TG)n Simple_repeat Simple_repeat 2 43 0 1057 256 51 22 chr12 46981795 46982068 -96804387 - MER21B LTR ERV1 -571 292 12 180 296 74 9 chr12 46982350 46982458 -96803997 - L2 LINE L2 -95 3218 3104 24 0 0 0 chr12 46983015 46983039 -96803416 + AT_rich Low_complexity Low_complexity 1 24 0 6050 132 12 14 chr12 46983237 46984692 -96801763 - L1PB1 LINE L1 -8 6143 4691 405 0 0 0 chr12 46985782 46985827 -96800628 + (TG)n Simple_repeat Simple_repeat 1 45 0 2197 104 0 7 chr12 46986313 46986610 -96799845 + AluSg SINE Alu 1 295 -15 2157 89 12 49 chr12 46986621 46986927 -96799528 + AluSq SINE Alu 1 296 -17 414 0 0 0 chr12 46986927 46986973 -96799482 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2157 89 12 49 chr12 46986973 46986991 -96799464 + AluSq SINE Alu 296 313 0 180 152 0 0 chr12 46990339 46990372 -96796083 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 46990820 46990841 -96795614 + AT_rich Low_complexity Low_complexity 1 21 0 1248 179 19 53 chr12 46991190 46991453 -96795002 + AluJo SINE Alu 43 296 -16 1068 163 19 62 chr12 46991494 46991703 -96794752 + AluJb SINE Alu 99 298 -14 324 123 70 0 chr12 46992237 46992294 -96794161 - MSTB2 LTR MaLR 0 457 397 1530 89 76 30 chr12 46992390 46992626 -96793829 - AluSc SINE Alu -16 293 47 679 100 20 10 chr12 46993199 46993299 -96793156 + U6 snRNA snRNA 4 104 -3 244 241 28 65 chr12 46993933 46994041 -96792414 + L1ME4a LINE L1 5975 6078 -43 199 314 95 30 chr12 46994420 46994589 -96791866 - L2 LINE L2 -1252 2062 1883 373 254 51 65 chr12 46994699 46994837 -96791618 + L2 LINE L2 3165 3300 -13 2804 7 0 0 chr12 46994837 46995140 -96791315 + AluYa5 SINE Alu 1 303 -8 604 161 0 0 chr12 46995226 46995319 -96791136 - AluJ/FLAM SINE Alu -213 99 7 336 48 0 0 chr12 46995408 46995450 -96791005 + (TC)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr12 46995449 46995484 -96790971 + (CA)n Simple_repeat Simple_repeat 1 35 0 * 24 0 0 0 chr12 46995860 46995884 -96790571 + AT_rich Low_complexity Low_complexity 1 24 0 1114 136 206 86 chr12 46996071 46996372 -96790083 + MER1B DNA MER1_type 1 337 0 1647 149 69 14 chr12 46996498 46996786 -96789669 - AluJb SINE Alu -8 304 1 189 278 127 63 chr12 46997104 46997230 -96789225 + MIR3 SINE MIR 54 187 -21 349 256 154 26 chr12 46998163 46998358 -96788097 - L1M4 LINE L1 -2024 4122 3903 668 277 40 16 chr12 46998551 46998800 -96787655 + LTR40b LTR ERVL 151 405 -57 2002 130 0 44 chr12 46999225 46999541 -96786914 - AluSx SINE Alu -10 302 1 24 0 0 0 chr12 46999542 46999566 -96786889 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chr12 47000344 47000383 -96786072 + AT_rich Low_complexity Low_complexity 1 39 0 2015 130 31 0 chr12 47000486 47000778 -96785677 + AluSx SINE Alu 1 301 -11 535 102 0 11 chr12 47001261 47001349 -96785106 + L1PB3 LINE L1 6065 6151 -3 1593 166 40 7 chr12 47002139 47002416 -96784039 + AluJb SINE Alu 3 288 -24 1853 147 17 0 chr12 47002426 47002718 -96783737 + AluSx SINE Alu 1 297 -15 263 276 11 46 chr12 47003356 47003443 -96783012 - MER5A DNA MER1_type -105 84 1 2344 83 10 0 chr12 47004011 47004311 -96782144 - AluSx SINE Alu -9 303 1 753 133 0 44 chr12 47004336 47004471 -96781984 - FLAM_C SINE Alu 0 133 5 32 44 0 29 chr12 47005496 47005533 -96780922 + AT_rich Low_complexity Low_complexity 1 37 -29 1998 121 0 10 chr12 47005533 47005822 -96780633 - AluSx SINE Alu -26 286 1 32 44 0 29 chr12 47005822 47005852 -96780603 + AT_rich Low_complexity Low_complexity 37 66 0 884 245 32 9 chr12 47006769 47006985 -96779470 + MER58A DNA MER1_type 3 223 -1 915 267 23 9 chr12 47007293 47007526 -96778929 - MIR SINE MIR -4 258 30 249 320 140 31 chr12 47007515 47007737 -96778718 + L2 LINE L2 432 677 -2637 * 603 283 28 11 chr12 47007923 47008103 -96778352 - MER5A DNA MER1_type 0 189 7 1869 113 87 4 chr12 47008617 47008892 -96777563 - AluSx SINE Alu -14 298 1 1774 152 20 10 chr12 47008897 47009199 -96777256 - AluJo SINE Alu -7 305 1 1151 202 38 11 chr12 47009406 47009668 -96776787 + MER33 DNA MER1_type 1 269 -55 447 345 156 26 chr12 47010294 47010999 -96775456 + L2 LINE L2 1990 3233 -39 800 196 53 48 chr12 47011677 47011866 -96774589 - MER20 DNA MER1_type 0 219 30 2266 63 6 51 chr12 47012223 47012538 -96773917 - AluY SINE Alu -10 301 1 278 96 19 0 chr12 47012960 47013012 -96773443 - L1MC4 LINE L1 0 8042 7990 2190 105 14 0 chr12 47013100 47013396 -96773059 - AluSg SINE Alu -10 300 1 246 42 62 0 chr12 47013448 47013496 -96772959 + T-rich Low_complexity Low_complexity 3 53 0 214 212 106 15 chr12 47013646 47013712 -96772743 - L2 LINE L2 -6 3266 3195 1643 180 14 18 chr12 47014291 47014574 -96771881 + AluJb SINE Alu 1 282 -30 249 33 0 0 chr12 47014577 47014607 -96771848 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1317 146 46 0 chr12 47014783 47015002 -96771453 - MER30 DNA MER1_type 0 230 2 2173 126 10 0 chr12 47015080 47015389 -96771066 - AluSx SINE Alu 0 312 1 486 0 0 0 chr12 47015875 47015929 -96770526 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr12 47016366 47016387 -96770068 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 47016828 47016857 -96769598 + AT_rich Low_complexity Low_complexity 1 29 0 403 331 45 25 chr12 47017077 47017319 -96769136 - L3 LINE CR1 -197 1380 1134 479 312 208 33 chr12 47017356 47017990 -96768465 - L3 LINE CR1 -608 969 225 225 333 35 0 chr12 47018700 47018757 -96767698 - L2 LINE L2 -78 3194 3136 260 182 261 11 chr12 47020756 47020844 -96765611 - MLT1H LTR MaLR -24 525 416 509 259 106 37 chr12 47020962 47021151 -96765304 + MER63A DNA MER1_type 1 202 -8 2275 103 0 16 chr12 47021475 47021787 -96764668 + AluSg SINE Alu 1 307 -3 892 214 42 23 chr12 47023900 47024115 -96762340 - MER20 DNA MER1_type 0 219 1 200 234 85 0 chr12 47024677 47024724 -96761731 - L2 LINE L2 -1 3312 3262 1674 189 17 24 chr12 47025441 47025494 -96760961 + AluJo SINE Alu 1 53 -259 4020 197 20 44 chr12 47025494 47026487 -96759968 + LTR5 LTR ERVK 1 969 0 1674 189 17 24 chr12 47026487 47026730 -96759725 + AluJo SINE Alu 53 295 -17 2125 102 0 51 chr12 47026732 47026866 -96759589 + AluSg SINE Alu 1 140 -170 2280 104 0 7 chr12 47026866 47027175 -96759280 + AluSc SINE Alu 1 307 -2 2125 102 0 51 chr12 47027175 47027355 -96759100 + AluSg SINE Alu 140 299 -11 1173 93 77 0 chr12 47028378 47028561 -96757894 - MER30 DNA MER1_type -33 197 1 853 118 0 76 chr12 47028602 47028746 -96757709 - FLAM_C SINE Alu 0 133 1 198 237 119 0 chr12 47028831 47028890 -96757565 - MIR SINE MIR -105 103 38 2097 102 0 18 chr12 47029040 47029324 -96757131 - AluSx SINE Alu -33 279 1 1978 120 4 0 chr12 47029715 47029989 -96756466 + AluSx SINE Alu 1 275 -37 234 289 189 0 chr12 47030016 47030106 -96756349 + MIR SINE MIR 46 152 -110 538 349 10 24 chr12 47030600 47030809 -96755646 - MIR SINE MIR -33 229 24 21 36 0 0 chr12 47031041 47031069 -96755386 + AT_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 47033468 47033501 -96752954 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 47033949 47033970 -96752485 + AT_rich Low_complexity Low_complexity 1 21 0 1352 177 45 0 chr12 47034319 47034562 -96751893 + AluJo SINE Alu 43 296 -16 1101 164 19 61 chr12 47034600 47034813 -96751642 + AluJb SINE Alu 96 299 -13 306 123 70 0 chr12 47035347 47035404 -96751051 - MSTB2 LTR MaLR 0 457 397 1567 87 78 26 chr12 47035504 47035735 -96750720 - AluSc SINE Alu -20 289 47 680 100 20 10 chr12 47036308 47036408 -96750047 + U6 snRNA snRNA 4 104 -3 331 243 27 63 chr12 47037042 47037153 -96749302 + L1ME4a LINE L1 5975 6081 -40 197 314 95 30 chr12 47037529 47037698 -96748757 - L2 LINE L2 -1252 2062 1883 374 254 51 65 chr12 47037808 47037946 -96748509 + L2 LINE L2 3165 3300 -13 2823 7 0 0 chr12 47037946 47038252 -96748203 + AluYa5 SINE Alu 1 306 -5 609 161 0 0 chr12 47038338 47038431 -96748024 - AluJ/FLAM SINE Alu -213 99 7 336 48 0 0 chr12 47038520 47038562 -96747893 + (TC)n Simple_repeat Simple_repeat 1 42 0 333 0 0 0 chr12 47038561 47038598 -96747857 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 24 0 0 0 chr12 47038974 47038998 -96747457 + AT_rich Low_complexity Low_complexity 1 24 0 1195 136 199 83 chr12 47039185 47039487 -96746968 + MER1B DNA MER1_type 1 337 0 1667 149 69 14 chr12 47039615 47039903 -96746552 - AluJb SINE Alu -8 304 1 190 278 127 63 chr12 47040221 47040347 -96746108 + MIR3 SINE MIR 54 187 -21 2159 110 0 0 chr12 47042011 47042317 -96744138 + AluSq SINE Alu 1 306 0 2326 100 3 0 chr12 47042512 47042812 -96743643 + AluSg SINE Alu 1 301 -9 920 269 25 12 chr12 47043636 47043851 -96742604 - L1ME3A LINE L1 -9 6144 5922 2423 74 10 0 chr12 47043851 47044149 -96742306 - AluY SINE Alu -10 301 1 920 269 25 12 chr12 47044149 47044256 -96742199 - L1ME3A LINE L1 -231 5922 5818 901 216 139 28 chr12 47044259 47044985 -96741470 - L1ME3A LINE L1 -725 5428 4606 1049 228 166 18 chr12 47045011 47045359 -96741096 - MLT1F1 LTR MaLR -119 448 42 1846 123 13 94 chr12 47045359 47045732 -96740723 + MER2 DNA MER2_type 2 344 0 1049 228 166 18 chr12 47045732 47045782 -96740673 - MLT1F1 LTR MaLR -525 42 1 320 243 56 9 chr12 47045793 47045900 -96740555 - L1ME3A LINE L1 -2896 3233 3122 1037 128 0 32 chr12 47045993 47046149 -96740306 + AluSq/x SINE Alu 1 151 -162 350 78 0 0 chr12 47046158 47046209 -96740246 + MADE1 DNA Mariner 27 77 -3 539 289 88 38 chr12 47046302 47046541 -96739914 + MIR SINE MIR 12 262 0 1536 138 86 43 chr12 47046653 47046978 -96739477 - MER44D DNA MER2_type 0 609 1 426 253 30 87 chr12 47048658 47048948 -96737507 - L1MEd LINE L1 -4805 1324 1055 355 119 0 0 chr12 47049026 47049085 -96737370 - L1PB3 LINE L1 -4 6150 6092 267 122 0 0 chr12 47049092 47049133 -96737322 - LTR3b LTR ERVK 0 500 460 748 184 19 6 chr12 47049134 47049292 -96737163 - LTR3b LTR ERVK -4 496 337 4924 152 38 54 chr12 47049292 47049355 -96737100 - L1PB3 LINE L1 -71 6083 6020 2308 95 3 0 chr12 47049355 47049659 -96736796 + AluSx SINE Alu 1 305 -7 2307 90 0 7 chr12 47049660 47049959 -96736496 + AluSg SINE Alu 1 297 -13 4924 152 38 54 chr12 47049959 47051257 -96735198 - L1PB3 LINE L1 -134 6020 4702 309 51 0 0 chr12 47051257 47051296 -96735159 + (TG)n Simple_repeat Simple_repeat 2 40 0 2102 117 3 3 chr12 47051297 47051587 -96734868 - AluSq SINE Alu -23 290 1 4924 152 38 54 chr12 47051587 47051762 -96734693 - L1PB3 LINE L1 -1452 4702 4526 2209 94 7 0 chr12 47051762 47052061 -96734394 - AluSq SINE Alu -11 302 2 4924 152 38 54 chr12 47052061 47052238 -96734217 - L1PB3 LINE L1 -1628 4526 4348 189 0 0 0 chr12 47052238 47052259 -96734196 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 4924 152 38 54 chr12 47052259 47052530 -96733925 - L1PB3 LINE L1 -1806 4348 4128 434 280 101 43 chr12 47052527 47052890 -96733565 - L1MEd LINE L1 -5155 964 623 * 2271 110 0 3 chr12 47052890 47053199 -96733256 - AluSg SINE Alu -2 308 1 434 280 101 43 chr12 47053199 47053336 -96733119 - L1MEd LINE L1 -5496 623 266 203 305 68 0 chr12 47053557 47053616 -96732839 - MIR SINE MIR -89 119 57 252 316 44 26 chr12 47053688 47053802 -96732653 - L2 LINE L2 -260 3053 2938 569 266 44 48 chr12 47054110 47054362 -96732093 - MER21B LTR ERV1 -144 719 469 2049 78 0 4 chr12 47055656 47055924 -96730531 - AluY SINE Alu 0 311 45 234 0 0 0 chr12 47055940 47055966 -96730489 + (T)n Simple_repeat Simple_repeat 1 26 0 433 322 70 78 chr12 47056141 47056640 -96729815 + L2 LINE L2 2725 3272 0 261 227 102 23 chr12 47056649 47056737 -96729718 - MIR SINE MIR -45 217 123 271 104 0 0 chr12 47056737 47056785 -96729670 + L1MA7 LINE L1 6244 6291 0 300 233 33 33 chr12 47057556 47057646 -96728809 + GA-rich Low_complexity Low_complexity 6 95 0 208 211 14 28 chr12 47057751 47057822 -96728633 + GA-rich Low_complexity Low_complexity 3 72 0 1791 134 72 17 chr12 47058368 47058660 -96727795 - AluSq SINE Alu -5 308 1 2445 37 10 7 chr12 47058733 47059030 -96727425 - AluY SINE Alu -13 298 1 1761 191 0 23 chr12 47059562 47059871 -96726584 + AluJo SINE Alu 3 304 -8 418 264 138 39 chr12 47059871 47060091 -96726364 + L1ME4a LINE L1 5600 5797 -324 1512 163 25 31 chr12 47060091 47060300 -96726155 - MER33 DNA MER1_type -2261 324 116 2608 27 7 0 chr12 47060300 47060597 -96725858 + AluY SINE Alu 1 299 -12 1512 163 25 31 chr12 47060597 47060713 -96725742 - MER33 DNA MER1_type -2469 116 1 418 264 138 39 chr12 47060713 47060950 -96725505 + L1ME4a LINE L1 5797 6102 -19 353 295 268 5 chr12 47062180 47062370 -96724085 - MIR SINE MIR -3 259 20 814 294 135 33 chr12 47062606 47063096 -96723359 + MLT1K LTR MaLR 15 554 -34 1046 160 6 33 chr12 47063323 47063504 -96722951 + FRAM SINE Alu 1 175 -1 293 305 42 51 chr12 47063530 47063648 -96722807 - L2 LINE L2 -10 3262 3146 1777 134 9 91 chr12 47064830 47065150 -96721305 - AluJo SINE Alu -18 294 1 398 264 0 0 chr12 47065280 47065367 -96721088 - L2 LINE L2 0 3272 3186 306 282 64 18 chr12 47065609 47065719 -96720736 - MIR SINE MIR -70 138 24 772 137 26 0 chr12 47065721 47065838 -96720617 + FLAM_C SINE Alu 1 120 -13 649 220 132 16 chr12 47065868 47066050 -96720405 - MER3 DNA MER1_type -3 206 4 294 291 152 57 chr12 47066089 47066247 -96720208 - MER5A DNA MER1_type 0 189 17 22 35 0 0 chr12 47066684 47066713 -96719742 + AT_rich Low_complexity Low_complexity 1 29 0 2539 54 0 3 chr12 47066871 47067169 -96719286 + AluY SINE Alu 1 297 -14 420 281 127 48 chr12 47067971 47068199 -96718256 + MIR SINE MIR 17 262 0 2169 112 7 0 chr12 47068260 47068546 -96717909 - AluSq SINE Alu -25 288 1 2206 130 10 0 chr12 47069020 47069321 -96717134 - AluJb SINE Alu -6 306 3 229 306 51 41 chr12 47069710 47069808 -96716647 - MIR3 SINE MIR -50 158 60 2261 118 0 0 chr12 47070053 47070340 -96716115 + AluSx SINE Alu 1 287 -25 305 273 146 42 chr12 47070448 47070524 -96715931 - L1MC5 LINE L1 -515 7446 7379 1857 201 8 16 chr12 47070524 47070892 -96715563 + MLT1A1 LTR MaLR 1 365 0 305 273 146 42 chr12 47070892 47070980 -96715475 - L1MC5 LINE L1 -582 7379 7265 2205 123 35 90 chr12 47070980 47071052 -96715403 - Tigger2a DNA MER2_type -2274 434 360 782 178 0 0 chr12 47071052 47071181 -96715274 - FLAM_A SINE Alu -4 129 1 2205 123 35 90 chr12 47071181 47071213 -96715242 - Tigger2a DNA MER2_type -2348 360 328 2339 75 3 0 chr12 47071213 47071505 -96714950 - AluY SINE Alu -18 293 1 2205 123 35 90 chr12 47071505 47071856 -96714599 - Tigger2a DNA MER2_type -2380 328 3 21 0 0 0 chr12 47072356 47072377 -96714078 + AT_rich Low_complexity Low_complexity 1 21 0 367 221 67 40 chr12 47072471 47072620 -96713835 - HAL1 LINE L1 -117 2390 2238 1974 120 0 63 chr12 47072672 47072988 -96713467 - AluJb SINE Alu -16 296 1 202 113 16 161 chr12 47073003 47073065 -96713390 + L2 LINE L2 3261 3313 0 1972 139 0 17 chr12 47073250 47073545 -96712910 + AluSx SINE Alu 1 290 -22 692 175 0 9 chr12 47075198 47075312 -96711143 - FLAM_C SINE Alu -28 115 3 746 93 0 0 chr12 47075332 47075429 -96711026 + AluY SINE Alu 1 97 -214 1725 97 4 8 chr12 47075612 47075849 -96710606 + AluSx SINE Alu 62 297 -15 22 35 0 0 chr12 47076139 47076168 -96710287 + AT_rich Low_complexity Low_complexity 1 29 0 9014 53 11 152 chr12 47077243 47078857 -96707598 + SVA Other Other 1 1386 0 483 226 32 16 chr12 47078916 47079040 -96707415 + MIR SINE MIR 133 258 -4 296 360 0 0 chr12 47079617 47079703 -96706752 - L3 LINE CR1 -115 1462 1377 1995 134 3 38 chr12 47079835 47080155 -96706300 + AluSx SINE Alu 1 309 -3 2052 135 0 3 chr12 47080468 47080757 -96705698 - AluSx SINE Alu -24 288 1 325 167 4 5 chr12 47080941 47081038 -96705417 + L1M4 LINE L1 5285 5376 -772 694 190 35 7 chr12 47081205 47081347 -96705108 + FRAM SINE Alu 1 146 -30 3417 197 26 31 chr12 47081370 47082245 -96704210 + L1MA9 LINE L1 5366 6236 -76 22 70 0 0 chr12 47082306 47082349 -96704106 + AT_rich Low_complexity Low_complexity 1 43 0 26 88 0 0 chr12 47082590 47082658 -96703797 + AT_rich Low_complexity Low_complexity 1 68 0 2158 133 0 7 chr12 47083240 47083542 -96702913 + AluSx SINE Alu 1 300 -12 461 225 22 36 chr12 47083727 47083865 -96702590 + L1MC5 LINE L1 7706 7841 -120 392 219 67 48 chr12 47084037 47084142 -96702313 + L2 LINE L2 3195 3301 -12 232 250 33 50 chr12 47084721 47084841 -96701614 + L1MC4 LINE L1 7865 7982 -60 751 218 7 0 chr12 47085829 47085971 -96700484 + FRAM SINE Alu 1 143 -33 294 29 0 0 chr12 47085983 47086018 -96700437 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 2352 57 3 0 chr12 47086329 47086632 -96699823 + AluY SINE Alu 3 306 0 2261 100 13 7 chr12 47086969 47087279 -96699176 + AluSx SINE Alu 1 312 0 1094 238 170 15 chr12 47087445 47087856 -96698599 - L1ME3A LINE L1 -14 6156 5682 1915 151 0 16 chr12 47087918 47088223 -96698232 - AluJb SINE Alu -12 300 1 1370 194 58 26 chr12 47088347 47088729 -96697726 + Charlie4a DNA MER1_type 111 504 -4 449 307 52 13 chr12 47089379 47089532 -96696923 - MER5B DNA MER1_type -19 159 1 1746 130 26 68 chr12 47090020 47090171 -96696284 + AluSx SINE Alu 1 136 -176 2145 121 0 0 chr12 47090171 47090495 -96695960 + AluSx SINE Alu 9 332 0 1746 130 26 68 chr12 47090495 47090649 -96695806 + AluSx SINE Alu 136 295 -17 1906 109 62 0 chr12 47090651 47090908 -96695547 + AluSq SINE Alu 1 273 -40 523 136 0 0 chr12 47090908 47090996 -96695459 + AluSp/q SINE Alu 226 313 0 300 292 42 57 chr12 47091075 47091267 -96695188 - L1M4 LINE L1 -1487 4659 4471 235 310 103 0 chr12 47091557 47091644 -96694811 - L2 LINE L2 -4 3309 3214 22 0 0 0 chr12 47092535 47092557 -96693898 + AT_rich Low_complexity Low_complexity 1 22 0 258 359 0 22 chr12 47093197 47093289 -96693166 - MER5A DNA MER1_type -37 152 63 203 380 40 20 chr12 47093241 47093341 -96693114 + MER5A DNA MER1_type 88 189 0 * 2126 135 3 0 chr12 47093637 47093948 -96692507 - AluSx SINE Alu 0 312 1 2170 99 10 16 chr12 47093956 47094268 -96692187 - AluSx SINE Alu -2 310 1 9881 121 31 14 chr12 47094268 47095643 -96690812 - Tigger1 DNA MER2_type -730 1688 278 2424 63 7 13 chr12 47095643 47095946 -96690509 + AluY SINE Alu 1 301 -10 9881 121 31 14 chr12 47095946 47096226 -96690229 - Tigger1 DNA MER2_type -2140 278 4 575 199 22 52 chr12 47096390 47096526 -96689929 - AluJo SINE Alu -178 134 3 1922 157 6 6 chr12 47096541 47096853 -96689602 - AluJb SINE Alu 0 312 1 42 0 0 0 chr12 47097447 47097489 -96688966 + AT_rich Low_complexity Low_complexity 1 42 0 1687 221 73 20 chr12 47097576 47098014 -96688441 - LTR40c LTR ERVL 0 465 5 568 243 59 6 chr12 47098166 47098335 -96688120 + L1MC4 LINE L1 6769 6946 -1096 1964 183 45 23 chr12 47098336 47099008 -96687447 + L1MB4 LINE L1 5067 5748 -432 251 222 22 33 chr12 47099045 47099135 -96687320 + L1MB4 LINE L1 6085 6173 -7 189 0 0 0 chr12 47099154 47099175 -96687280 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 467 192 135 0 chr12 47099175 47099279 -96687176 + L1MC4 LINE L1 6944 7061 -981 450 191 48 0 chr12 47099522 47099606 -96686849 - AluJb SINE Alu -192 110 23 615 194 16 23 chr12 47099606 47099735 -96686720 + AluJo SINE Alu 88 215 -97 3721 125 54 2 chr12 47100186 47100200 -96686255 + Tigger1 DNA MER2_type 1780 1792 -626 2157 116 3 7 chr12 47100200 47100502 -96685953 - AluSx SINE Alu -11 301 1 3721 125 54 2 chr12 47100502 47101094 -96685361 + Tigger1 DNA MER2_type 1792 2418 0 214 205 0 0 chr12 47101112 47101151 -96685304 + T-rich Low_complexity Low_complexity 1 39 0 955 190 0 0 chr12 47101152 47101315 -96685140 - FRAM SINE Alu -2 164 2 1625 93 37 0 chr12 47101656 47101902 -96684553 - L1MA2 LINE L1 0 6304 6050 30 0 0 0 chr12 47101969 47101999 -96684456 + AT_rich Low_complexity Low_complexity 1 30 0 272 248 11 17 chr12 47102076 47102211 -96684244 - L2 LINE L2 0 3313 3210 1013 169 0 0 chr12 47102754 47102908 -96683547 + AluJb SINE Alu 129 282 -30 25 0 0 0 chr12 47102910 47102935 -96683520 + AT_rich Low_complexity Low_complexity 1 25 0 1661 169 3 20 chr12 47102946 47103248 -96683207 + AluSg SINE Alu 3 299 -11 470 236 115 80 chr12 47103283 47103571 -96682884 - L1MC4 LINE L1 -302 7740 7443 2071 102 9 78 chr12 47103576 47103910 -96682545 - AluSx SINE Alu -1 311 1 558 0 0 0 chr12 47104397 47104459 -96681996 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr12 47104896 47104917 -96681538 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 47105358 47105387 -96681068 + AT_rich Low_complexity Low_complexity 1 29 0 388 331 45 25 chr12 47105607 47105849 -96680606 - L3 LINE CR1 -197 1380 1134 455 316 208 33 chr12 47105886 47106520 -96679935 - L3 LINE CR1 -608 969 225 225 0 0 0 chr12 47107698 47107723 -96678732 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1969 127 0 4 chr12 47107723 47107998 -96678457 - AluSx SINE Alu -32 280 7 30 27 0 0 chr12 47109674 47109711 -96676744 + AT_rich Low_complexity Low_complexity 1 37 0 2000 125 7 20 chr12 47110035 47110339 -96676116 - AluSx SINE Alu -12 300 1 2308 87 3 7 chr12 47110384 47110693 -96675762 + AluSc SINE Alu 2 309 0 1083 151 24 33 chr12 47110699 47110911 -96675544 + AluJo SINE Alu 84 293 -19 189 0 0 0 chr12 47111426 47111447 -96675008 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 832 145 0 8 chr12 47111454 47111578 -96674877 - FLAM_C SINE Alu -20 123 1 237 217 54 43 chr12 47111726 47111818 -96674637 - L1ME LINE L1 -471 5650 5558 21 0 0 0 chr12 47111829 47111850 -96674605 + AT_rich Low_complexity Low_complexity 1 21 0 323 282 103 0 chr12 47111850 47111967 -96674488 - L1MDa LINE L1 -3070 3470 3342 303 246 172 45 chr12 47112155 47112289 -96674166 - L2 LINE L2 0 3313 3163 1877 185 89 45 chr12 47112899 47113169 -96673286 + L1MB8 LINE L1 4128 4385 -1761 189 0 0 0 chr12 47113169 47113190 -96673265 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1877 185 89 45 chr12 47113190 47113367 -96673088 + L1MB8 LINE L1 4385 4553 -1593 2231 90 7 0 chr12 47113367 47113666 -96672789 + AluSq SINE Alu 2 302 -11 1877 185 89 45 chr12 47113666 47113813 -96672642 + L1MB8 LINE L1 4553 4749 -1397 776 225 133 8 chr12 47163973 47164213 -96622242 - LTR41 LTR ERVL -496 277 8 314 214 124 11 chr12 47164217 47164306 -96622149 - L1MDa LINE L1 -4125 2596 2498 2247 97 7 3 chr12 47164313 47164621 -96621834 - AluY SINE Alu -2 309 1 1716 178 3 0 chr12 47164648 47164934 -96621521 + AluJb SINE Alu 1 287 -25 31 0 0 0 chr12 47164941 47164972 -96621483 + AT_rich Low_complexity Low_complexity 1 31 0 1481 158 72 7 chr12 47165104 47165383 -96621072 - AluJo SINE Alu -13 299 3 275 163 0 0 chr12 47165386 47165435 -96621020 - L1MB7 LINE L1 -9 6175 6127 623 222 4 146 chr12 47165448 47165687 -96620768 + L1MB8 LINE L1 5541 5745 -421 261 209 0 15 chr12 47165686 47165753 -96620702 + L1MB8 LINE L1 6072 6137 -41 * 2179 102 0 52 chr12 47165757 47166082 -96620373 - AluSc SINE Alu -1 308 1 2021 190 40 57 chr12 47166082 47166384 -96620071 - L1ME LINE L1 -838 5308 5003 1877 140 0 7 chr12 47166384 47166696 -96619759 - AluSx SINE Alu 0 310 1 2021 190 40 57 chr12 47166696 47166808 -96619647 - L1ME LINE L1 -1143 5003 4900 2032 121 0 13 chr12 47166808 47167113 -96619342 + AluSx SINE Alu 2 302 -10 2021 190 40 57 chr12 47167113 47167191 -96619264 - L1ME LINE L1 -1246 4900 4822 1206 115 0 22 chr12 47167241 47167423 -96619032 - AluSg/x SINE Alu -1 311 134 2112 78 4 4 chr12 47167423 47167691 -96618764 - AluSp SINE Alu -8 305 38 386 300 66 32 chr12 47167800 47168018 -96618437 - L1MDa LINE L1 -4435 2105 1853 231 36 0 0 chr12 47168018 47168046 -96618409 + (TTA)n Simple_repeat Simple_repeat 1 28 0 386 300 66 32 chr12 47168046 47168086 -96618369 - L1MDa LINE L1 -4687 1853 1816 2043 113 33 13 chr12 47168090 47168390 -96618065 - AluSx SINE Alu -6 306 1 952 279 66 43 chr12 47168542 47168937 -96617518 + MLT1H1 LTR MaLR 1 409 -158 1982 160 3 0 chr12 47169107 47169407 -96617048 - AluJo SINE Alu -10 302 2 1684 201 0 7 chr12 47169606 47169894 -96616561 + AluJo SINE Alu 2 287 -25 218 256 0 0 chr12 47170421 47170464 -96615991 - MIR SINE MIR -17 245 203 225 94 0 0 chr12 47170491 47170523 -96615932 + (T)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr12 47170844 47170869 -96615586 + AT_rich Low_complexity Low_complexity 1 25 0 213 245 19 0 chr12 47171378 47171431 -96615024 + GA-rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr12 47171705 47171740 -96614715 + AT_rich Low_complexity Low_complexity 1 35 0 366 238 124 0 chr12 47174033 47174138 -96612317 - MIR SINE MIR -50 212 95 2628 31 0 46 chr12 47174371 47174694 -96611761 + AluY SINE Alu 2 309 -2 1647 161 32 18 chr12 47175152 47175478 -96610977 - AluJo SINE Alu 0 330 1 315 49 0 0 chr12 47176465 47176506 -96609949 + (T)n Simple_repeat Simple_repeat 1 41 0 21 36 0 0 chr12 47176966 47176994 -96609461 + AT_rich Low_complexity Low_complexity 1 28 0 2019 141 0 3 chr12 47177003 47177293 -96609162 + AluJb SINE Alu 1 289 -23 2012 142 3 0 chr12 47177298 47177587 -96608868 + AluSx SINE Alu 1 290 -22 181 200 273 0 chr12 47177595 47177650 -96608805 - MIR SINE MIR -21 241 172 26 0 0 0 chr12 47177724 47177750 -96608705 + AT_rich Low_complexity Low_complexity 1 26 0 2109 115 11 0 chr12 47178907 47179193 -96607262 - AluSp SINE Alu -19 294 6 933 207 0 0 chr12 47179720 47179889 -96606566 - AluJb SINE Alu -8 304 136 2259 126 7 0 chr12 47180422 47180723 -96605732 + AluSx SINE Alu 1 303 -9 1061 299 76 25 chr12 47180724 47181092 -96605363 + MLT1E LTR MaLR 116 502 -91 2016 142 3 10 chr12 47181135 47181446 -96605009 - AluSx SINE Alu -3 309 1 346 148 272 0 chr12 47181450 47181531 -96604924 + MLT1F LTR MaLR 440 542 0 5184 59 14 0 chr12 47181589 47182237 -96604218 - L1PA8 LINE L1 0 6172 5516 497 132 66 0 chr12 47182376 47182472 -96603983 + MER5A DNA MER1_type 6 109 -80 828 100 0 0 chr12 47182656 47182776 -96603679 + (TTCC)n Simple_repeat Simple_repeat 3 122 0 1699 178 14 11 chr12 47182776 47183062 -96603393 - AluJb SINE Alu -25 287 1 2072 114 40 0 chr12 47184366 47184664 -96601791 - AluSx SINE Alu -2 310 1 1862 150 89 49 chr12 47184874 47185280 -96601175 - MSTB1 LTR MaLR -9 423 2 1717 199 27 66 chr12 47185284 47185458 -96600997 + L1ME1 LINE L1 5695 5874 -292 2211 103 0 3 chr12 47185458 47185749 -96600706 + AluSq SINE Alu 1 290 -23 1717 199 27 66 chr12 47185749 47185930 -96600525 + L1ME1 LINE L1 5874 6028 -138 2435 67 0 17 chr12 47185930 47186230 -96600225 - AluY SINE Alu -16 295 1 1717 199 27 66 chr12 47186230 47186360 -96600095 + L1ME1 LINE L1 6028 6162 -4 22 0 0 0 chr12 47186423 47186445 -96600010 + AT_rich Low_complexity Low_complexity 1 22 0 8780 113 106 66 chr12 47186535 47188166 -96598289 + pTR5 LTR ERV1 743 2438 0 2097 131 3 0 chr12 47188173 47188470 -96597985 + AluSx SINE Alu 1 298 -14 1565 157 6 83 chr12 47188703 47189015 -96597440 + AluJb SINE Alu 1 288 -24 276 83 0 50 chr12 47189015 47189075 -96597380 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 2221 105 3 22 chr12 47189077 47189392 -96597063 + AluSq SINE Alu 1 309 -4 404 310 82 16 chr12 47189887 47190071 -96596384 - MLT1J LTR MaLR -92 419 224 2202 124 3 0 chr12 47190118 47190416 -96596039 - AluSx SINE Alu -13 299 1 262 323 10 21 chr12 47190429 47190525 -96595930 - MLT1L LTR MaLR -327 288 194 2130 137 0 7 chr12 47190596 47190903 -96595552 + AluSx SINE Alu 1 305 -7 869 173 39 0 chr12 47190915 47191071 -96595384 - MLT1A1 LTR MaLR -57 308 147 207 0 0 0 chr12 47191080 47191103 -96595352 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2193 130 6 12 chr12 47191103 47191448 -96595007 - L1PA16 LINE L1 -18 6148 5806 1049 128 20 0 chr12 47191849 47191997 -96594458 + AluJb SINE Alu 1 151 -161 299 125 0 0 chr12 47191997 47192037 -96594418 - Alu SINE Alu -260 40 1 26 0 0 0 chr12 47192189 47192215 -96594240 + AT_rich Low_complexity Low_complexity 1 26 0 2239 116 0 13 chr12 47192217 47192528 -96593927 + AluSx SINE Alu 1 307 -5 7157 160 133 26 chr12 47192620 47194118 -96592337 + MER52A LTR ERV1 1 1755 0 3453 117 35 36 chr12 47194305 47194337 -96592118 + L1MB3 LINE L1 5577 5608 -575 2224 117 3 0 chr12 47194337 47194637 -96591818 + AluSx SINE Alu 1 301 -11 3453 117 35 36 chr12 47194637 47195211 -96591244 + L1MB3 LINE L1 5608 6182 -1 2710 229 44 14 chr12 47195531 47196205 -96590250 + L1ME1 LINE L1 4545 5197 -949 1768 181 10 3 chr12 47196205 47196503 -96589952 + AluJb SINE Alu 4 303 -9 252 0 0 0 chr12 47196503 47196531 -96589924 + (TA)n Simple_repeat Simple_repeat 2 29 0 2710 229 44 14 chr12 47196531 47196584 -96589871 + L1ME1 LINE L1 5196 5295 -851 1813 173 35 42 chr12 47196577 47196977 -96589478 + L1MB4 LINE L1 5778 6174 -6 * 3800 216 30 9 chr12 47196996 47197835 -96588620 + L1ME1 LINE L1 5293 6148 -18 234 0 0 0 chr12 47198587 47198613 -96587842 + (TG)n Simple_repeat Simple_repeat 2 27 0 363 296 0 0 chr12 47198939 47199047 -96587408 - MIR3 SINE MIR 0 208 101 1312 14 0 0 chr12 47199062 47199237 -96587218 + L1PA3 LINE L1 5993 6167 0 1834 158 7 7 chr12 47199369 47199661 -96586794 + AluJb SINE Alu 1 292 -20 2043 138 3 7 chr12 47199696 47200001 -96586454 - AluSx SINE Alu -8 304 1 673 120 0 0 chr12 47200274 47200374 -96586081 - AluSg/x SINE Alu -7 303 204 552 221 39 0 chr12 47200375 47200502 -96585953 - MIR SINE MIR -102 160 29 321 169 0 0 chr12 47200570 47200629 -96585826 + CT-rich Low_complexity Low_complexity 4 62 0 943 189 6 6 chr12 47200629 47200809 -96585646 - AluSg/x SINE Alu 0 310 131 790 225 28 6 chr12 47200810 47200992 -96585463 - MIR SINE MIR -38 224 39 2635 146 18 33 chr12 47200992 47201031 -96585424 + MER31A LTR ERV1 1 39 -446 2660 33 3 0 chr12 47201031 47201335 -96585120 - AluY SINE Alu -6 305 1 2635 146 18 33 chr12 47201335 47201783 -96584672 + MER31A LTR ERV1 39 481 -4 39 0 0 0 chr12 47201832 47201871 -96584584 + AT_rich Low_complexity Low_complexity 1 39 0 1634 147 30 53 chr12 47201873 47202173 -96584282 + AluSx SINE Alu 1 293 -19 432 0 0 0 chr12 47202179 47202227 -96584228 + (TA)n Simple_repeat Simple_repeat 2 49 0 621 147 211 0 chr12 47202252 47202361 -96584094 + AluJb SINE Alu 2 133 -179 203 296 11 51 chr12 47203311 47203487 -96582968 + A-rich Low_complexity Low_complexity 2 170 0 2130 108 3 7 chr12 47203561 47203871 -96582584 - AluSx SINE Alu 0 309 1 2341 91 7 0 chr12 47203879 47204175 -96582280 - AluSq SINE Alu -15 298 1 5105 272 50 21 chr12 47204332 47205823 -96580632 + ERVL LTR ERVL 3273 4806 -958 2321 121 0 0 chr12 47205823 47206129 -96580326 + AluSx SINE Alu 1 306 -6 586 128 12 0 chr12 47206141 47206227 -96580228 + L1PA6 LINE L1 10 96 -6365 35711 77 11 8 chr12 47206228 47211892 -96574563 + L1PA6 LINE L1 786 6468 -1 1570 283 70 45 chr12 47211892 47212187 -96574268 + ERVL LTR ERVL 4796 5082 -682 5198 112 16 0 chr12 47212187 47212939 -96573516 + L1PA11 LINE L1 5411 6174 0 1570 283 70 45 chr12 47212939 47213358 -96573097 + ERVL LTR ERVL 5082 5528 -236 667 197 184 71 chr12 47213608 47213767 -96572688 + LTR50 LTR ERVL 19 159 -636 2224 103 3 17 chr12 47213767 47214068 -96572387 - AluSx SINE Alu -15 297 1 667 197 184 71 chr12 47214068 47214288 -96572167 + LTR50 LTR ERVL 159 441 -354 1989 142 0 10 chr12 47214670 47214972 -96571483 + AluJb SINE Alu 1 299 -13 2496 84 0 3 chr12 47214972 47215282 -96571173 + AluSq SINE Alu 1 309 -4 732 279 57 3 chr12 47215357 47215655 -96570800 - L1ME4a LINE L1 -209 5912 5599 1086 259 26 32 chr12 47215694 47215753 -96570702 + MER46C DNA MER2_type 1 59 -279 2563 40 0 7 chr12 47215753 47216049 -96570406 - AluY SINE Alu -17 294 1 1086 259 26 32 chr12 47216049 47216329 -96570126 + MER46C DNA MER2_type 59 338 0 2132 114 46 58 chr12 47216402 47216678 -96569777 + MLT1B LTR MaLR 1 272 -118 2351 98 10 7 chr12 47216678 47216984 -96569471 - AluY SINE Alu -4 307 1 2132 114 46 58 chr12 47216984 47217100 -96569355 + MLT1B LTR MaLR 272 388 -2 2007 148 0 13 chr12 47217461 47217766 -96568689 - AluJo SINE Alu -11 301 1 1649 147 0 75 chr12 47217959 47218057 -96568398 - 7SLRNA srpRNA srpRNA -8 312 208 2281 106 0 7 chr12 47218057 47218358 -96568097 - AluSx SINE Alu -12 300 2 1649 147 0 75 chr12 47218358 47218566 -96567889 - 7SLRNA srpRNA srpRNA -112 208 29 2076 149 0 0 chr12 47218586 47218888 -96567567 - AluJb SINE Alu -1 311 10 768 214 14 0 chr12 47218924 47219069 -96567386 + FRAM SINE Alu 1 147 -19 279 71 0 0 chr12 47219082 47219124 -96567331 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 698 138 0 9 chr12 47219696 47219805 -96566650 - FLAM_A SINE Alu -23 119 12 386 155 61 142 chr12 47219825 47219973 -96566482 - L2 LINE L2 0 3313 3178 186 241 0 60 chr12 47220119 47220202 -96566253 - MIR3 SINE MIR -6 202 125 207 305 168 38 chr12 47220399 47220530 -96565925 + MIR3 SINE MIR 10 157 -51 326 93 0 0 chr12 47220532 47220575 -96565880 + Tigger5 DNA MER2_type 13 55 -2268 244 51 26 26 chr12 47220545 47220584 -96565871 + Tigger5 DNA MER2_type 2252 2290 -33 * 518 189 0 0 chr12 47220582 47220672 -96565783 + Tigger5 DNA MER2_type 2234 2323 0 2140 103 0 10 chr12 47220775 47221076 -96565379 - AluSx SINE Alu -14 298 1 186 352 39 17 chr12 47221453 47221632 -96564823 - L2 LINE L2 -525 2789 2607 270 335 73 22 chr12 47221774 47221938 -96564517 + MIR SINE MIR 4 171 -80 26 82 0 0 chr12 47222286 47222347 -96564108 + GC_rich Low_complexity Low_complexity 1 61 0 203 171 24 0 chr12 47222504 47222545 -96563910 + C-rich Low_complexity Low_complexity 4 45 0 22 0 0 0 chr12 47222654 47222676 -96563779 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 47222791 47222813 -96563642 + GC_rich Low_complexity Low_complexity 1 22 0 230 270 14 0 chr12 47222821 47222895 -96563560 + (CGG)n Simple_repeat Simple_repeat 3 77 0 212 203 0 34 chr12 47222960 47223019 -96563436 + G-rich Low_complexity Low_complexity 3 59 0 21 57 0 0 chr12 47223210 47223245 -96563210 + GC_rich Low_complexity Low_complexity 1 35 0 231 360 30 51 chr12 47225708 47225791 -96560664 - L3b LINE CR1 -85 1498 1415 1869 182 0 0 chr12 47225791 47226087 -96560368 - AluJb SINE Alu -6 306 11 231 360 30 51 chr12 47226087 47226200 -96560255 - L3b LINE CR1 -168 1415 1306 579 214 28 0 chr12 47226283 47226428 -96560027 - L1PA16 LINE L1 -9 6157 6009 2221 109 0 31 chr12 47226561 47226914 -96559541 - AluSx SINE Alu 0 343 1 1979 145 0 3 chr12 47226995 47227285 -96559170 + AluJo SINE Alu 6 294 -18 283 301 72 0 chr12 47227697 47227780 -96558675 - L2 LINE L2 0 3272 3184 5394 176 89 25 chr12 47228387 47229753 -96556702 + Charlie1a DNA MER1_type 2 1455 0 255 379 0 21 chr12 47230347 47230442 -96556013 + L2 LINE L2 2767 2859 -455 2150 122 7 0 chr12 47230486 47230816 -96555639 - AluSc SINE Alu 0 342 11 1755 156 87 3 chr12 47230897 47231218 -96555237 + MER7A DNA MER2_type 1 346 0 250 337 109 0 chr12 47231282 47231368 -96555087 + L2 LINE L2 3161 3257 -10 6575 58 14 57 chr12 47231368 47232365 -96554090 - SVA Other Other 0 1386 433 1242 88 16 107 chr12 47232382 47232812 -96553643 - SVA Other Other -520 866 476 2608 89 28 83 chr12 47232836 47233600 -96552855 - SVA Other Other -518 868 393 321 306 48 75 chr12 47233642 47233936 -96552519 + L1M2 LINE L1 596 881 -5968 1760 181 3 7 chr12 47234121 47234420 -96552035 - AluJo SINE Alu -12 300 3 6901 49 19 0 chr12 47234662 47236424 -96550031 + L1PA7 LINE L1 4390 6153 -1 198 0 0 0 chr12 47236742 47236764 -96549691 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2877 51 0 0 chr12 47236764 47237116 -96549339 - L1PA8 LINE L1 -17 6155 5804 886 115 8 8 chr12 47237146 47237276 -96549179 + AluJo SINE Alu 5 134 -178 285 128 0 0 chr12 47237428 47237475 -96548980 + (TG)n Simple_repeat Simple_repeat 2 48 0 309 225 138 0 chr12 47237909 47237989 -96548466 - MIR SINE MIR 0 262 172 200 204 0 45 chr12 47238788 47238832 -96547623 - L3 LINE CR1 -1 1576 1535 1726 161 50 11 chr12 47239233 47239512 -96546943 - AluJo SINE Alu -22 290 1 746 232 140 0 chr12 47240899 47241063 -96545392 + MER5A DNA MER1_type 3 189 0 250 355 0 0 chr12 47241160 47241267 -96545188 + (TG)n Simple_repeat Simple_repeat 2 108 0 1886 145 84 5 chr12 47242122 47242567 -96543888 - Ricksha DNA DNA -13 3233 2803 387 0 0 0 chr12 47242574 47242617 -96543838 + (TG)n Simple_repeat Simple_repeat 2 44 0 671 322 53 73 chr12 47243720 47244418 -96542037 - L2 LINE L2 -665 2649 1966 1954 108 17 24 chr12 47244824 47245162 -96541293 - AluSx SINE Alu 0 336 1 743 156 33 0 chr12 47245392 47245514 -96540941 - FLAM_C SINE Alu -17 126 1 231 303 101 0 chr12 47245668 47245767 -96540688 - L2 LINE L2 -1 3312 3204 204 40 0 0 chr12 47245767 47245792 -96540663 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2024 123 0 0 chr12 47245804 47246081 -96540374 - AluSx SINE Alu -35 277 1 274 298 190 29 chr12 47246158 47246231 -96540224 - L2 LINE L2 -243 3070 3010 1815 167 7 0 chr12 47246231 47246519 -96539936 + AluJb SINE Alu 1 290 -22 274 298 190 29 chr12 47246519 47246856 -96539599 - L2 LINE L2 -303 3010 2589 21 0 0 0 chr12 47247387 47247408 -96539047 + AT_rich Low_complexity Low_complexity 1 21 0 437 232 127 57 chr12 47247451 47247684 -96538771 - MLT1F1 LTR MaLR -174 419 184 418 88 0 0 chr12 47247684 47247741 -96538714 - Alu SINE Alu -254 57 1 1978 125 50 0 chr12 47248756 47249036 -96537419 - AluSx SINE Alu -18 294 1 2173 108 7 26 chr12 47249039 47249346 -96537109 - AluSx SINE Alu -9 303 3 2322 114 0 0 chr12 47249351 47249658 -96536797 - AluSx SINE Alu -5 307 1 2316 95 3 0 chr12 47250705 47251000 -96535455 + AluSp SINE Alu 1 296 -17 2049 162 0 0 chr12 47251213 47251521 -96534934 - AluJb SINE Alu -4 308 1 207 0 0 0 chr12 47252335 47252358 -96534097 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1942 135 14 7 chr12 47252376 47252657 -96533798 - AluSx SINE Alu -29 283 1 30 0 0 0 chr12 47252687 47252717 -96533738 + AT_rich Low_complexity Low_complexity 1 30 0 2483 54 3 0 chr12 47252894 47253192 -96533263 - AluY SINE Alu -12 299 1 26 30 0 0 chr12 47253309 47253342 -96533113 + AT_rich Low_complexity Low_complexity 1 33 0 330 162 103 60 chr12 47253809 47253926 -96532529 + L1MC4 LINE L1 7906 8027 -15 213 261 0 0 chr12 47253960 47254006 -96532449 + MIR SINE MIR 106 151 -111 2209 114 0 0 chr12 47254179 47254476 -96531979 - AluSx SINE Alu -15 297 1 180 0 0 0 chr12 47254485 47254505 -96531950 + (T)n Simple_repeat Simple_repeat 1 20 0 604 223 61 58 chr12 47254571 47254881 -96531574 + L1ME3 LINE L1 895 1205 -4914 415 273 88 4 chr12 47254884 47255122 -96531333 + L1ME3 LINE L1 2893 3150 -2979 2393 96 0 0 chr12 47255130 47255432 -96531023 + AluSg1 SINE Alu 1 302 -7 25 31 0 0 chr12 47255589 47255621 -96530834 + AT_rich Low_complexity Low_complexity 1 32 0 1548 177 123 29 chr12 47255740 47256186 -96530269 - L1MB7 LINE L1 0 6184 5697 1454 170 40 7 chr12 47256217 47256493 -96529962 + MER2 DNA MER2_type 60 344 -1 921 207 25 0 chr12 47256494 47256697 -96529758 - L1MB7 LINE L1 -536 5648 5441 680 172 26 33 chr12 47256709 47256860 -96529595 - FAM SINE Alu -1 48 1 373 301 59 54 chr12 47257158 47257361 -96529094 + L1ME3 LINE L1 3881 4084 -2045 449 331 55 48 chr12 47257568 47257861 -96528594 + L1ME3 LINE L1 4447 4741 -1388 2212 115 7 0 chr12 47257868 47258164 -96528291 + AluSq SINE Alu 3 300 -13 865 259 68 20 chr12 47258180 47258531 -96527924 + L1ME3 LINE L1 5778 6145 0 1691 172 0 4 chr12 47258930 47259192 -96527263 + AluSx SINE Alu 1 261 -51 201 74 0 0 chr12 47259193 47259220 -96527235 + (CAA)n Simple_repeat Simple_repeat 1 27 0 271 223 139 25 chr12 47259301 47259489 -96526966 + L1ME LINE L1 5255 5466 -698 241 301 136 30 chr12 47259507 47259706 -96526749 + L1ME LINE L1 5586 5805 -357 727 244 27 80 chr12 47259767 47259992 -96526463 - MIR SINE MIR -22 240 28 245 368 68 8 chr12 47260640 47260757 -96525698 + L2 LINE L2 3147 3270 -2 655 133 76 0 chr12 47261822 47261958 -96524497 - MER33 DNA MER1_type -248 76 1 1868 164 0 10 chr12 47262203 47262502 -96523953 - AluJb SINE Alu -16 296 1 191 208 299 13 chr12 47263740 47263817 -96522638 - L2 LINE L2 -10 3262 3164 304 288 65 20 chr12 47263992 47264145 -96522310 + Charlie8 DNA MER1_type 46 205 -2212 227 325 0 0 chr12 47264178 47264255 -96522200 + Charlie8 DNA MER1_type 2341 2417 0 2286 103 0 16 chr12 47264551 47264863 -96521592 - AluSx SINE Alu -5 307 1 306 373 141 28 chr12 47264865 47265184 -96521271 + L2 LINE L2 2916 3270 -2 244 211 88 0 chr12 47265920 47265977 -96520478 + L2 LINE L2 2302 2363 -951 208 329 0 41 chr12 47266020 47266093 -96520362 + L2 LINE L2 3203 3272 0 1746 141 0 0 chr12 47266192 47266441 -96520014 - AluSq SINE Alu -64 249 1 4320 142 53 39 chr12 47266474 47266999 -96519456 - Tigger3b DNA MER2_type -2115 913 397 1757 175 14 14 chr12 47266999 47267296 -96519159 + AluJb SINE Alu 1 297 -15 4320 142 53 39 chr12 47267296 47267468 -96518987 - Tigger3b DNA MER2_type -2631 397 229 2198 92 0 16 chr12 47267468 47267771 -96518684 - AluSx SINE Alu -14 298 1 4320 142 53 39 chr12 47267771 47267971 -96518484 - Tigger3b DNA MER2_type -2799 229 2 383 319 155 53 chr12 47268047 47268268 -96518187 + L2 LINE L2 2513 2710 -604 1690 180 0 3 chr12 47268268 47268577 -96517878 - AluJo SINE Alu 0 308 1 383 319 155 53 chr12 47268577 47268715 -96517740 + L2 LINE L2 2710 2910 -404 1555 119 190 8 chr12 47268744 47268997 -96517458 - AluSx SINE Alu -13 299 1 291 279 16 0 chr12 47269110 47269171 -96517284 + L2 LINE L2 3188 3249 -23 369 269 71 46 chr12 47269308 47269505 -96516950 + L1M4 LINE L1 2204 2405 -3741 325 291 67 8 chr12 47270206 47270340 -96516115 + L1M4 LINE L1 3073 3214 -2932 1571 204 6 16 chr12 47270428 47270741 -96515714 - AluJb SINE Alu -1 311 2 21 71 0 0 chr12 47271031 47271073 -96515382 + AT_rich Low_complexity Low_complexity 1 42 0 213 221 58 39 chr12 47271124 47271228 -96515227 + (CATATA)n Simple_repeat Simple_repeat 1 106 0 401 295 31 132 chr12 47271653 47272009 -96514446 + L2 LINE L2 2934 3253 -19 25 0 0 0 chr12 47272090 47272115 -96514340 + AT_rich Low_complexity Low_complexity 1 25 0 2124 140 3 3 chr12 47272117 47272425 -96514030 + AluSx SINE Alu 1 308 -4 970 206 36 7 chr12 47272647 47273040 -96513415 - MLT1F LTR MaLR -3 590 45 356 229 29 0 chr12 47273183 47273253 -96513202 - MIR SINE MIR -185 77 6 1700 154 4 15 chr12 47273365 47273625 -96512830 + AluJo SINE Alu 23 279 -33 221 167 0 0 chr12 47273634 47273676 -96512779 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1805 140 7 4 chr12 47274095 47274367 -96512088 - AluSq SINE Alu 0 313 41 222 30 61 0 chr12 47274414 47274447 -96512008 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 740 147 42 21 chr12 47274447 47274590 -96511865 - AluSg/x SINE Alu -29 280 135 2032 119 37 3 chr12 47274591 47274885 -96511570 - AluSx SINE Alu -8 304 1 27 0 0 0 chr12 47274894 47274921 -96511534 + AT_rich Low_complexity Low_complexity 1 27 0 12905 118 45 44 chr12 47274936 47275592 -96510863 - Tigger1 DNA MER2_type -32 2386 1732 273 29 0 0 chr12 47275592 47275626 -96510829 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1725 160 4 7 chr12 47275627 47275908 -96510547 - AluSx SINE Alu -32 280 1 12905 118 45 44 chr12 47275908 47276193 -96510262 - Tigger1 DNA MER2_type -686 1732 1449 2175 122 0 0 chr12 47276193 47276480 -96509975 + AluSx SINE Alu 1 287 -25 12905 118 45 44 chr12 47276480 47277915 -96508540 - Tigger1 DNA MER2_type -969 1449 4 2150 123 10 3 chr12 47279836 47280137 -96506318 - AluSx SINE Alu -9 303 1 1477 234 120 38 chr12 47280168 47280716 -96505739 - MLT1E LTR MaLR 0 593 1 1682 151 23 0 chr12 47280989 47281247 -96505208 - AluJb SINE Alu 0 312 49 1957 144 0 0 chr12 47281331 47281615 -96504840 - AluSx SINE Alu -28 284 1 299 255 19 85 chr12 47281618 47281724 -96504731 + MER5B DNA MER1_type 20 118 -60 954 183 0 24 chr12 47281730 47281899 -96504556 - FRAM SINE Alu -14 162 1 320 125 0 36 chr12 47281910 47281966 -96504489 + MER5B DNA MER1_type 125 178 0 29 0 0 0 chr12 47282161 47282190 -96504265 + AT_rich Low_complexity Low_complexity 1 29 0 554 276 18 18 chr12 47282423 47282586 -96503869 - MER5B DNA MER1_type -15 163 1 365 202 52 165 chr12 47282722 47282970 -96503485 - L2 LINE L2 -55 3258 3039 759 255 147 95 chr12 47283020 47283140 -96503315 - L2 LINE L2 -261 3052 2940 1456 180 29 80 chr12 47283140 47283551 -96502904 + MLT1B LTR MaLR 1 390 0 759 255 147 95 chr12 47283551 47283821 -96502634 - L2 LINE L2 -373 2940 2685 2174 116 0 17 chr12 47283821 47284123 -96502332 - AluSq SINE Alu -16 297 1 759 255 147 95 chr12 47284123 47284374 -96502081 - L2 LINE L2 -628 2685 2357 1157 155 6 0 chr12 47284382 47284556 -96501899 + AluSx SINE Alu 1 175 -137 225 81 0 0 chr12 47284573 47284610 -96501845 - AluSx SINE Alu -2 306 270 1540 145 4 4 chr12 47284610 47284838 -96501617 - AluSx SINE Alu -84 228 1 355 213 75 0 chr12 47284838 47284932 -96501523 - L2 LINE L2 -999 2315 2215 209 218 269 13 chr12 47284932 47285010 -96501445 - MER5B DNA MER1_type 0 178 81 751 152 55 48 chr12 47285042 47285207 -96501248 - FRAM SINE Alu 0 166 1 1971 206 53 40 chr12 47285257 47285806 -96500649 - L1ME1 LINE L1 0 6166 5611 227 193 0 70 chr12 47286021 47286078 -96500377 + MER5B DNA MER1_type 126 178 0 228 286 17 59 chr12 47286078 47286197 -96500258 - L2 LINE L2 -1093 2221 2108 * 330 269 43 21 chr12 47286155 47286248 -96500207 - MER5A DNA MER1_type -94 95 1 1813 265 133 21 chr12 47286259 47286964 -96499491 - L2 LINE L2 -1151 2163 1380 361 194 0 122 chr12 47286995 47287093 -96499362 + L2 LINE L2 3228 3313 0 766 195 8 0 chr12 47287564 47287692 -96498763 + FRAM SINE Alu 18 146 -30 354 80 0 0 chr12 47287720 47287770 -96498685 + (TC)n Simple_repeat Simple_repeat 2 51 0 1854 188 5 25 chr12 47287770 47288168 -96498287 - L1MB8 LINE L1 -149 6029 5640 23 0 0 0 chr12 47288470 47288493 -96497962 + AT_rich Low_complexity Low_complexity 1 23 0 1894 155 0 33 chr12 47288828 47289131 -96497324 - AluJb SINE Alu -19 293 1 974 175 0 28 chr12 47289283 47289460 -96496995 - FAM SINE Alu -2 173 2 2110 127 7 0 chr12 47289512 47289812 -96496643 + AluSx SINE Alu 1 302 -10 990 160 11 139 chr12 47289988 47290275 -96496180 - AluYb8 SINE Alu -68 250 1 227 286 184 0 chr12 47290475 47290573 -96495882 - L2 LINE L2 -1 3312 3197 1955 173 0 3 chr12 47290631 47290944 -96495511 + AluJo SINE Alu 1 312 0 2033 130 10 0 chr12 47291090 47291390 -96495065 + AluJb SINE Alu 1 303 -9 401 275 174 54 chr12 47291393 47291836 -96494619 - L2 LINE L2 -1156 2158 1663 45 45 0 0 chr12 47291931 47291997 -96494458 + AT_rich Low_complexity Low_complexity 1 66 0 2230 121 0 10 chr12 47292321 47292627 -96493828 + AluSq SINE Alu 1 303 -10 925 148 59 35 chr12 47292910 47293079 -96493376 - AluJo SINE Alu -139 173 1 3276 176 103 33 chr12 47293251 47293483 -96492972 + Looper DNA T2_type 25 239 -1319 2203 74 0 0 chr12 47293483 47293768 -96492687 - L1PA8 LINE L1 0 6172 5888 3276 176 103 33 chr12 47293768 47294590 -96491865 + Looper DNA T2_type 239 1002 -556 2023 101 25 7 chr12 47294590 47294868 -96491587 + AluSx SINE Alu 1 283 -29 320 73 36 0 chr12 47294871 47294926 -96491529 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3276 176 103 33 chr12 47294926 47295010 -96491445 + Looper DNA T2_type 1003 1322 -236 2282 98 0 25 chr12 47295032 47295349 -96491106 + AluY SINE Alu 1 309 -2 341 258 17 8 chr12 47295353 47295473 -96490982 + Looper DNA T2_type 1328 1448 -110 352 253 95 0 chr12 47295617 47295712 -96490743 + L2 LINE L2 3206 3309 -4 1809 141 57 20 chr12 47295714 47296013 -96490442 - AluJb SINE Alu 0 312 3 889 187 70 12 chr12 47297631 47297802 -96488653 + MER5A DNA MER1_type 7 187 -2 205 226 113 0 chr12 47298399 47298452 -96488003 + L2 LINE L2 3255 3313 0 211 303 0 0 chr12 47299106 47299172 -96487283 + A-rich Low_complexity Low_complexity 1 66 0 207 0 0 0 chr12 47299435 47299458 -96486997 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 440 239 72 43 chr12 47302232 47302370 -96484085 + MIR SINE MIR 119 260 -2 635 158 97 0 chr12 47302883 47302997 -96483458 + AluJb SINE Alu 1 125 -187 192 77 0 0 chr12 47303003 47303029 -96483426 + (TA)n Simple_repeat Simple_repeat 2 27 0 1411 205 101 24 chr12 47303329 47303753 -96482702 + MSTB2 LTR MaLR 1 457 0 2505 127 50 10 chr12 47304776 47305192 -96481263 + Tigger2a DNA MER2_type 2 434 0 2306 99 0 3 chr12 47306073 47306377 -96480078 + AluSx SINE Alu 1 303 -9 748 174 0 0 chr12 47306535 47306656 -96479799 - AluJb SINE Alu -179 133 13 226 211 11 67 chr12 47306677 47306767 -96479688 + T-rich Low_complexity Low_complexity 6 90 0 6630 112 34 15 chr12 47307242 47308690 -96477765 - L1MA2 LINE L1 0 6304 4796 2102 130 13 0 chr12 47308690 47308997 -96477458 - AluSx SINE Alu -1 311 1 6630 112 34 15 chr12 47308997 47309716 -96476739 - L1MA2 LINE L1 -1508 4796 4092 2121 84 0 18 chr12 47309801 47310085 -96476370 - AluSc SINE Alu 0 309 31 31 44 0 0 chr12 47310199 47310244 -96476211 + AT_rich Low_complexity Low_complexity 1 45 0 336 161 0 0 chr12 47310424 47310486 -96475969 + CT-rich Low_complexity Low_complexity 3 64 0 1348 96 46 14 chr12 47310519 47310738 -96475717 - L1MA1 LINE L1 -8 6294 6069 1558 110 4 9 chr12 47310795 47311023 -96475432 - AluSp SINE Alu -1 312 86 983 120 0 0 chr12 47311023 47311148 -96475307 - AluSq/x SINE Alu -187 125 1 1995 165 0 0 chr12 47311221 47311530 -96474925 - AluJb SINE Alu -3 309 1 22 0 0 0 chr12 47311535 47311557 -96474898 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 47311766 47311792 -96474663 + AT_rich Low_complexity Low_complexity 1 26 0 243 79 0 0 chr12 47312423 47312461 -96473994 + (T)n Simple_repeat Simple_repeat 1 38 0 792 147 7 29 chr12 47312525 47312661 -96473794 - FLAM_C SINE Alu 0 133 1 2357 74 3 19 chr12 47312906 47313216 -96473239 + AluSc SINE Alu 1 305 -4 258 321 0 12 chr12 47314231 47314312 -96472143 + L2 LINE L2 3193 3272 0 408 336 41 41 chr12 47314637 47314881 -96471574 + L2 LINE L2 2631 2874 -440 203 313 30 0 chr12 47315144 47315211 -96471244 + L2 LINE L2 3242 3310 -3 509 290 74 3 chr12 47315513 47315713 -96470742 - MIR SINE MIR -45 217 6 370 294 81 113 chr12 47315858 47316476 -96469979 - L1M2 LINE L1 -5467 1382 785 222 91 0 0 chr12 47316781 47316814 -96469641 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr12 47317738 47317766 -96468689 + AT_rich Low_complexity Low_complexity 1 28 0 1548 173 27 50 chr12 47318162 47318462 -96467993 + AluJo SINE Alu 7 299 -13 342 292 55 31 chr12 47318963 47319100 -96467355 + MIR SINE MIR 14 151 -65 1062 160 59 8 chr12 47319106 47319343 -96467112 - L1MA9 LINE L1 0 6312 6064 270 336 16 8 chr12 47319576 47319698 -96466757 - MLT1K LTR MaLR -325 263 141 353 322 33 16 chr12 47320426 47320547 -96465908 + MER5A DNA MER1_type 61 183 -6 2445 80 0 0 chr12 47320603 47320902 -96465553 - AluY SINE Alu -12 299 1 2178 125 51 14 chr12 47321107 47321459 -96464996 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr12 47321482 47321520 -96464935 + AT_rich Low_complexity Low_complexity 1 38 0 1083 146 6 12 chr12 47321587 47321751 -96464704 - AluJb SINE Alu -13 299 137 1881 99 33 59 chr12 47321751 47322054 -96464401 - AluSx SINE Alu -17 295 1 279 79 0 0 chr12 47322482 47322520 -96463935 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1927 123 18 0 chr12 47322541 47322817 -96463638 - AluSx SINE Alu -31 281 1 198 0 0 0 chr12 47323023 47323045 -96463410 + (T)n Simple_repeat Simple_repeat 1 22 0 20532 41 6 2 chr12 47323221 47327198 -96459257 - L1P LINE L1 -2165 3981 3 991 178 0 35 chr12 47327627 47327801 -96458654 + AluJb SINE Alu 135 302 -10 180 0 0 0 chr12 47328800 47328820 -96457635 + (T)n Simple_repeat Simple_repeat 1 20 0 462 279 19 39 chr12 47329850 47330004 -96456451 - L2 LINE L2 -2 3311 3161 2031 131 3 3 chr12 47330644 47330935 -96455520 - AluSx SINE Alu -21 291 1 1592 131 0 0 chr12 47331141 47331363 -96455092 - AluSx SINE Alu -28 284 63 1163 223 65 53 chr12 47331480 47331892 -96454563 + L1ME1 LINE L1 5750 6166 0 799 149 51 46 chr12 47331941 47332116 -96454339 + FRAM SINE Alu 1 40 0 209 218 269 13 chr12 47332138 47332216 -96454239 + MER5B DNA MER1_type 81 178 0 355 213 75 0 chr12 47332216 47332310 -96454145 + L2 LINE L2 2215 2315 -999 1474 157 5 0 chr12 47332310 47332533 -96453922 + AluSx SINE Alu 1 224 -88 486 228 23 116 chr12 47332772 47333075 -96453380 + L1MC4 LINE L1 7768 8042 0 326 123 18 0 chr12 47334427 47334484 -96451971 + (TA)n Simple_repeat Simple_repeat 2 59 0 1788 158 14 7 chr12 47335238 47335529 -96450926 + AluJb SINE Alu 2 294 -18 25 83 0 0 chr12 47335623 47335683 -96450772 + AT_rich Low_complexity Low_complexity 1 60 0 386 221 110 73 chr12 47335883 47336137 -96450318 + MER5C DNA MER1_type 1 324 0 22 0 0 0 chr12 47336146 47336168 -96450287 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 47336573 47336627 -96449828 + AT_rich Low_complexity Low_complexity 1 54 0 384 262 85 58 chr12 47336841 47337082 -96449373 + L1M4 LINE L1 5242 5492 -682 2145 121 0 3 chr12 47337242 47337539 -96448916 - AluSx SINE Alu -16 296 1 266 170 0 0 chr12 47337541 47337588 -96448867 - AluSg/x SINE Alu -170 130 84 983 120 0 0 chr12 47337588 47337713 -96448742 - AluSq/x SINE Alu -187 125 1 1995 165 0 0 chr12 47337786 47338095 -96448360 - AluJb SINE Alu -3 309 1 22 0 0 0 chr12 47338100 47338122 -96448333 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 47338331 47338357 -96448098 + AT_rich Low_complexity Low_complexity 1 26 0 217 132 0 0 chr12 47338990 47339028 -96447427 + (T)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 47339070 47339098 -96447357 + AT_rich Low_complexity Low_complexity 1 28 0 800 164 0 8 chr12 47339098 47339232 -96447223 - FLAM_C SINE Alu 0 133 1 2340 75 3 19 chr12 47339477 47339785 -96446670 + AluSc SINE Alu 1 303 -6 258 321 0 12 chr12 47340801 47340882 -96445573 + L2 LINE L2 3193 3272 0 421 336 37 37 chr12 47341207 47341451 -96445004 + L2 LINE L2 2631 2874 -440 203 313 30 0 chr12 47341714 47341781 -96444674 + L2 LINE L2 3242 3310 -3 509 290 74 3 chr12 47342083 47342283 -96444172 - MIR SINE MIR -45 217 6 370 294 81 113 chr12 47342428 47343046 -96443409 - L1M2 LINE L1 -5467 1382 785 222 91 0 0 chr12 47343351 47343384 -96443071 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr12 47344308 47344336 -96442119 + AT_rich Low_complexity Low_complexity 1 28 0 1571 167 27 50 chr12 47344732 47345032 -96441423 + AluJo SINE Alu 7 299 -13 342 292 55 31 chr12 47345533 47345670 -96440785 + MIR SINE MIR 14 151 -65 1076 169 55 0 chr12 47345676 47345912 -96440543 - L1MA9 LINE L1 0 6312 6064 270 336 16 8 chr12 47346145 47346267 -96440188 - MLT1K LTR MaLR -325 263 141 353 322 33 16 chr12 47346995 47347116 -96439339 + MER5A DNA MER1_type 61 183 -6 2436 81 0 0 chr12 47347172 47347470 -96438985 - AluY SINE Alu -13 298 1 2178 125 51 14 chr12 47347675 47348027 -96438428 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr12 47348050 47348088 -96438367 + AT_rich Low_complexity Low_complexity 1 38 0 1083 146 6 12 chr12 47348155 47348319 -96438136 - AluJb SINE Alu -13 299 137 1881 99 33 59 chr12 47348319 47348622 -96437833 - AluSx SINE Alu -17 295 1 279 79 0 0 chr12 47349049 47349087 -96437368 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1927 123 18 0 chr12 47349108 47349384 -96437071 - AluSx SINE Alu -31 281 1 1993 55 0 32 chr12 47349591 47349844 -96436611 - AluY SINE Alu -11 300 56 2213 110 13 0 chr12 47349844 47350143 -96436312 - AluY SINE Alu -8 303 1 436 134 0 0 chr12 47350143 47350210 -96436245 - AluSq/x SINE Alu -177 136 70 1426 160 47 23 chr12 47350304 47350560 -96435895 + AluJb SINE Alu 3 264 -48 384 88 0 0 chr12 47350561 47350618 -96435837 + (TATG)n Simple_repeat Simple_repeat 2 58 0 353 202 21 64 chr12 47350685 47350779 -96435676 - L1MD2 LINE L1 -239 6120 6031 1864 157 65 19 chr12 47351516 47351929 -96434526 - L1MB7 LINE L1 -135 6049 5618 392 122 27 14 chr12 47351909 47351983 -96434472 + L1MB7 LINE L1 6059 6133 -51 * 566 306 45 30 chr12 47352015 47352280 -96434175 - MLT1I LTR MaLR -39 370 102 1208 161 24 15 chr12 47352846 47353051 -96433404 + AluJo SINE Alu 87 293 -19 2012 145 0 19 chr12 47353138 47353456 -96432999 - AluJo SINE Alu 0 312 1 580 304 117 38 chr12 47353802 47354067 -96432388 - MLT1G3 LTR MaLR -228 304 62 198 0 0 0 chr12 47354067 47354089 -96432366 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1956 136 18 0 chr12 47354089 47354369 -96432086 - AluSx SINE Alu -26 286 2 580 304 117 38 chr12 47354369 47354424 -96432031 - MLT1G3 LTR MaLR -469 63 1 257 320 37 34 chr12 47355056 47355224 -96431231 - MER5A DNA MER1_type 0 178 4 32 26 0 0 chr12 47355282 47355321 -96431134 + AT_rich Low_complexity Low_complexity 1 39 0 299 272 37 25 chr12 47355867 47355948 -96430507 - MER5B DNA MER1_type -30 148 67 1629 188 13 17 chr12 47356401 47356699 -96429756 - AluJo SINE Alu -12 300 4 1437 152 32 24 chr12 47356701 47357034 -96429421 - L1P1 LINE L1 -464 5691 5352 228 260 73 21 chr12 47358121 47358217 -96428238 + MIR3 SINE MIR 87 187 -21 1390 144 130 40 chr12 47358395 47358672 -96427783 + AluJo SINE Alu 1 302 -10 215 395 151 26 chr12 47358690 47358961 -96427494 - L2 LINE L2 -36 3236 2932 1360 157 48 59 chr12 47358975 47359312 -96427143 - L1MA7 LINE L1 -1 6290 5958 1869 128 55 0 chr12 47360471 47360760 -96425695 - AluSq SINE Alu -8 305 1 308 174 0 0 chr12 47360851 47360897 -96425558 - Alu SINE Alu -255 47 2 2158 103 0 3 chr12 47361007 47361297 -96425158 + AluSx SINE Alu 12 300 -12 1619 180 6 38 chr12 47361321 47361638 -96424817 - AluJo SINE Alu -5 307 1 243 320 234 3 chr12 47361728 47362100 -96424355 + L2 LINE L2 1932 2389 -925 953 236 124 58 chr12 47363880 47364761 -96421694 - L1MC4 LINE L1 0 8042 6958 2163 128 7 0 chr12 47364761 47365058 -96421397 - AluSx SINE Alu -13 299 1 953 236 124 58 chr12 47365058 47365147 -96421308 - L1MC4 LINE L1 -1084 6958 6876 1423 181 40 11 chr12 47365737 47366014 -96420441 - AluJo SINE Alu -27 285 1 2000 147 0 16 chr12 47366528 47366841 -96419614 + AluJo SINE Alu 1 308 -4 725 194 75 5 chr12 47367275 47367461 -96418994 + MER105 DNA DNA 5 203 -1 1626 175 30 0 chr12 47367553 47367821 -96418634 - AluJo SINE Alu -19 293 18 208 227 0 27 chr12 47367861 47367936 -96418519 + CT-rich Low_complexity Low_complexity 4 76 0 892 206 18 0 chr12 47367940 47368105 -96418350 - FRAM SINE Alu -9 167 1 1592 151 87 36 chr12 47368433 47368790 -96417665 - THE1C LTR MaLR 0 375 1 1281 265 92 0 chr12 47369171 47369564 -96416891 - MLT1J LTR MaLR 0 511 83 8427 32 6 1 chr12 47370075 47371869 -96414586 - L1PA4 LINE L1 -3 6152 4354 4572 244 99 35 chr12 47371990 47374097 -96412358 - L1MC4a LINE L1 -263 7545 5304 468 219 44 0 chr12 47374093 47374207 -96412248 - L1MB7 LINE L1 0 6184 6066 * 1439 212 7 10 chr12 47374390 47374687 -96411768 - AluJo SINE Alu -16 296 1 1905 158 10 3 chr12 47374692 47374990 -96411465 - AluY SINE Alu -11 300 1 219 294 76 17 chr12 47375167 47375286 -96411169 - MIR3 SINE MIR -21 187 62 1437 152 32 24 chr12 47376349 47376682 -96409773 + L1M1 LINE L1 5352 5691 -464 1629 188 13 17 chr12 47376684 47376982 -96409473 + AluJo SINE Alu 4 300 -12 299 272 37 25 chr12 47377435 47377516 -96408939 + MER5B DNA MER1_type 67 148 -30 25 51 0 0 chr12 47378062 47378101 -96408354 + AT_rich Low_complexity Low_complexity 1 39 0 276 311 37 34 chr12 47378159 47378327 -96408128 + MER5A DNA MER1_type 4 178 0 1976 135 18 0 chr12 47379014 47379296 -96407159 + AluSx SINE Alu 2 288 -24 580 317 68 4 chr12 47379316 47379581 -96406874 + MLT1G3 LTR MaLR 21 302 -228 2002 145 0 19 chr12 47379927 47380245 -96406210 + AluJo SINE Alu 1 312 0 1208 161 24 15 chr12 47380331 47380536 -96405919 - AluJo SINE Alu -19 293 87 566 306 45 30 chr12 47381102 47381367 -96405088 + MLT1I LTR MaLR 102 370 -39 392 122 27 14 chr12 47381399 47381473 -96404982 - L1MB7 LINE L1 -51 6133 6059 * 1834 162 65 22 chr12 47381453 47381867 -96404588 + L1MB7 LINE L1 5618 6049 -135 353 202 21 64 chr12 47382602 47382696 -96403759 + L1MD2 LINE L1 6031 6120 -239 240 122 0 0 chr12 47382763 47382804 -96403651 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1414 164 47 23 chr12 47382805 47383061 -96403394 - AluJb SINE Alu -48 264 3 436 134 0 0 chr12 47383155 47383222 -96403233 + AluSq/x SINE Alu 70 136 -176 2213 110 13 0 chr12 47383222 47383521 -96402934 + AluY SINE Alu 1 303 -8 1854 84 8 20 chr12 47383521 47383772 -96402683 + AluY SINE Alu 56 303 -8 1360 157 48 59 chr12 47384931 47385268 -96401187 + L1MA7 LINE L1 5958 6290 -1 215 395 151 26 chr12 47385282 47385553 -96400902 + L2 LINE L2 2932 3236 -36 1390 144 130 40 chr12 47385571 47385848 -96400607 - AluJo SINE Alu -10 302 1 6772 117 23 2 chr12 47386181 47387619 -96398836 + L1MA3 LINE L1 4833 6305 0 218 342 25 0 chr12 47388299 47388378 -96398077 + L2 LINE L2 3191 3271 -1 1776 172 83 130 chr12 47388503 47389266 -96397189 - LTR8A LTR ERV1 0 727 1 566 257 81 40 chr12 47389629 47389851 -96396604 + L3 LINE CR1 1238 1468 -109 2601 52 0 0 chr12 47389894 47390201 -96396254 + AluY SINE Alu 1 307 -4 1474 164 65 22 chr12 47390972 47391247 -96395208 + AluJo SINE Alu 1 287 -25 50 0 0 0 chr12 47391247 47391297 -96395158 + AT_rich Low_complexity Low_complexity 1 50 0 7755 21 0 0 chr12 47391515 47392826 -96393629 - L1PA2 LINE L1 -2 6153 4843 1315 214 7 11 chr12 47392826 47393102 -96393353 + AluJo SINE Alu 23 297 -15 468 219 44 0 chr12 47393285 47393399 -96393056 + L1MB7 LINE L1 6066 6184 0 * 4508 247 100 35 chr12 47393395 47395500 -96390955 + L1MC4a LINE L1 5304 7545 -263 532 225 25 111 chr12 47395517 47395841 -96390614 + L1MC4 LINE L1 7747 8042 0 404 211 48 95 chr12 47396710 47396857 -96389598 + MIR SINE MIR 123 262 0 398 108 15 0 chr12 47397190 47397255 -96389200 + (TA)n Simple_repeat Simple_repeat 2 67 0 1788 158 14 7 chr12 47398009 47398300 -96388155 + AluJb SINE Alu 2 294 -18 25 83 0 0 chr12 47398394 47398454 -96388001 + AT_rich Low_complexity Low_complexity 1 60 0 386 221 110 73 chr12 47398654 47398908 -96387547 + MER5C DNA MER1_type 1 324 0 22 0 0 0 chr12 47398917 47398939 -96387516 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 47399343 47399397 -96387058 + AT_rich Low_complexity Low_complexity 1 54 0 384 262 85 58 chr12 47399611 47399852 -96386603 + L1M4 LINE L1 5242 5492 -682 2390 95 0 0 chr12 47400012 47400308 -96386147 - AluSx SINE Alu -16 296 1 261 327 37 47 chr12 47400921 47401028 -96385427 - L2 LINE L2 -12 3260 3155 218 103 86 35 chr12 47401321 47401379 -96385076 + (TTTAA)n Simple_repeat Simple_repeat 1 61 0 1907 131 10 48 chr12 47401380 47401693 -96384762 - AluSx SINE Alu -9 303 3 654 137 23 69 chr12 47402403 47402534 -96383921 + FLAM_C SINE Alu 1 125 -18 387 206 271 0 chr12 47403748 47403855 -96382600 - MIR SINE MIR -1 261 126 26 74 0 0 chr12 47404144 47404198 -96382257 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr12 47404600 47404623 -96381832 + AT_rich Low_complexity Low_complexity 1 23 0 364 203 16 0 chr12 47404946 47405010 -96381445 - MIR SINE MIR -179 83 19 2235 128 0 3 chr12 47405171 47405476 -96380979 - AluSx SINE Alu -4 308 5 1273 165 8 0 chr12 47405742 47405990 -96380465 + L1P LINE L1 1476 1725 -4421 1982 224 102 37 chr12 47406615 47407024 -96379431 + L2 LINE L2 603 1065 -2249 1821 145 0 43 chr12 47407024 47407328 -96379127 + AluJb SINE Alu 3 293 -19 1982 224 102 37 chr12 47407328 47407516 -96378939 + L2 LINE L2 1065 1239 -2075 3104 142 45 14 chr12 47407539 47408368 -96378087 - MER49 LTR ERV1 -15 908 16 2663 252 241 41 chr12 47408377 47408426 -96378029 + L2 LINE L2 1233 1271 -2042 1942 116 52 68 chr12 47408426 47408807 -96377648 - THE1C LTR MaLR 0 375 1 2663 252 241 41 chr12 47408807 47409729 -96376726 + L2 LINE L2 1271 2007 -1306 2106 109 26 7 chr12 47409729 47410031 -96376424 - AluSx SINE Alu -4 308 1 2663 252 241 41 chr12 47410031 47410578 -96375877 + L2 LINE L2 2007 3047 -266 1105 233 113 55 chr12 47410592 47411089 -96375366 + MLT1H1 LTR MaLR 20 555 0 309 249 34 124 chr12 47411139 47411316 -96375139 + L2 LINE L2 3101 3261 -52 2345 70 7 3 chr12 47411950 47412251 -96374204 + AluY SINE Alu 1 302 -9 313 134 45 0 chr12 47412670 47412737 -96373718 - MLT1J LTR MaLR -3 508 439 2006 115 66 36 chr12 47413534 47413898 -96372557 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr12 47414217 47414250 -96372205 + AT_rich Low_complexity Low_complexity 1 33 0 21663 33 1 0 chr12 47414250 47417659 -96368796 - L1PA4 LINE L1 -3 6152 2741 11801 56 3 9 chr12 47417659 47419248 -96367207 - L1PA4 LINE L1 -4565 1581 3 991 178 0 35 chr12 47419677 47419851 -96366604 + AluJb SINE Alu 135 302 -10 180 0 0 0 chr12 47420850 47420870 -96365585 + (T)n Simple_repeat Simple_repeat 1 20 0 462 279 19 39 chr12 47421901 47422055 -96364400 - L2 LINE L2 -2 3311 3161 1557 183 0 14 chr12 47422695 47422980 -96363475 - AluSx SINE Alu -21 291 11 12494 35 4 2 chr12 47423431 47425049 -96361406 - L1P LINE L1 -3051 3095 1476 1044 197 10 14 chr12 47425171 47425379 -96361076 - AluJo SINE Alu -105 207 1 1759 178 34 3 chr12 47425384 47425676 -96360779 - AluJb SINE Alu -11 301 1 636 289 100 72 chr12 47425776 47425917 -96360538 - L1 LINE L1 -1119 5027 4891 652 119 0 175 chr12 47425917 47426077 -96360378 + FLAM_C SINE Alu 1 132 -1 636 289 100 72 chr12 47426077 47426354 -96360101 - L1 LINE L1 -1255 4891 4623 2215 96 0 10 chr12 47426354 47426647 -96359808 + AluSq SINE Alu 1 290 -23 636 289 100 72 chr12 47426647 47426773 -96359682 - L1 LINE L1 -1523 4623 4502 1466 101 60 5 chr12 47426773 47426991 -96359464 - MER30 DNA MER1_type 0 230 1 636 289 100 72 chr12 47426991 47427085 -96359370 - L1 LINE L1 -1644 4502 4369 353 289 84 74 chr12 47427622 47427906 -96358549 - L2 LINE L2 -150 3122 2836 24 32 0 0 chr12 47428450 47428481 -96357974 + AT_rich Low_complexity Low_complexity 1 31 0 326 304 72 14 chr12 47429261 47429399 -96357056 - L2 LINE L2 -222 3050 2905 527 266 52 73 chr12 47430080 47430264 -96356191 + MIR SINE MIR 15 194 -68 1998 46 0 0 chr12 47430264 47430504 -96355951 - L1PA5 LINE L1 -9 6145 5906 527 266 52 73 chr12 47430504 47430552 -96355903 + MIR SINE MIR 194 242 -20 28 0 0 0 chr12 47431769 47431797 -96354658 + AT_rich Low_complexity Low_complexity 1 28 0 242 211 39 0 chr12 47434111 47434163 -96352292 + MER5A DNA MER1_type 136 189 0 238 294 7 42 chr12 47435389 47435577 -96350878 + GA-rich Low_complexity Low_complexity 1 181 0 209 267 167 11 chr12 47435912 47436002 -96350453 - MER5A DNA MER1_type -85 104 1 24 0 0 0 chr12 47436554 47436578 -96349877 + AT_rich Low_complexity Low_complexity 1 24 0 1968 148 3 7 chr12 47436973 47437271 -96349184 + AluJo SINE Alu 1 297 -15 356 340 75 0 chr12 47437974 47438133 -96348322 - MLT1L LTR MaLR -88 527 357 2146 109 7 0 chr12 47438570 47438855 -96347600 + AluSc SINE Alu 1 287 -22 1884 136 0 7 chr12 47438865 47439151 -96347304 + AluJb SINE Alu 1 284 -28 474 39 51 51 chr12 47439898 47439976 -96346479 + MADE1 DNA Mariner 2 79 -1 1630 158 38 8 chr12 47440096 47440362 -96346093 + AluJo SINE Alu 9 282 -30 412 47 16 16 chr12 47440366 47440430 -96346025 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 21 36 0 0 chr12 47440528 47440556 -96345899 + AT_rich Low_complexity Low_complexity 1 28 0 643 196 146 10 chr12 47440565 47440764 -96345691 - MER33 DNA MER1_type -91 233 8 234 257 119 64 chr12 47440768 47440877 -96345578 + L2 LINE L2 3185 3299 -14 891 189 26 83 chr12 47441281 47441509 -96344946 + MER20 DNA MER1_type 1 215 -4 258 356 46 0 chr12 47441603 47441690 -96344765 - L2 LINE L2 -221 3051 2961 1371 80 0 10 chr12 47441709 47441908 -96344547 - L1PA7 LINE L1 -20 6134 5938 * 2650 77 26 0 chr12 47441895 47442274 -96344181 + L1PA7 LINE L1 5557 5945 -209 468 293 27 32 chr12 47442377 47442565 -96343890 + L2 LINE L2 2565 2751 -563 1982 224 102 37 chr12 47442995 47443404 -96343051 + L2 LINE L2 603 1065 -2249 1821 145 0 43 chr12 47443404 47443708 -96342747 + AluJb SINE Alu 3 293 -19 1982 224 102 37 chr12 47443708 47443896 -96342559 + L2 LINE L2 1065 1239 -2075 3088 143 45 14 chr12 47443919 47444748 -96341707 - MER49 LTR ERV1 -15 908 16 2705 251 241 41 chr12 47444757 47444806 -96341649 + L2 LINE L2 1233 1271 -2042 1942 116 52 68 chr12 47444806 47445187 -96341268 - THE1C LTR MaLR 0 375 1 2705 251 241 41 chr12 47445187 47446109 -96340346 + L2 LINE L2 1271 2007 -1306 2126 106 27 7 chr12 47446109 47446410 -96340045 - AluSx SINE Alu -5 307 1 2705 251 241 41 chr12 47446410 47446957 -96339498 + L2 LINE L2 2007 3047 -266 1105 233 113 55 chr12 47446971 47447468 -96338987 + MLT1H1 LTR MaLR 20 555 0 309 249 34 124 chr12 47447518 47447695 -96338760 + L2 LINE L2 3101 3261 -52 2345 70 7 3 chr12 47448329 47448630 -96337825 + AluY SINE Alu 1 302 -9 313 134 45 0 chr12 47449052 47449119 -96337336 - MLT1J LTR MaLR -3 508 439 2034 113 66 36 chr12 47449916 47450280 -96336175 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr12 47450599 47450632 -96335823 + AT_rich Low_complexity Low_complexity 1 33 0 42036 40 3 1 chr12 47450632 47456771 -96329684 - L1PA4 LINE L1 -3 6152 4 2008 144 0 3 chr12 47456780 47457072 -96329383 - AluJb SINE Alu -21 291 1 804 319 74 13 chr12 47457318 47457710 -96328745 - MLT1J LTR MaLR -60 451 36 294 164 0 0 chr12 47457712 47457767 -96328688 + GA-rich Low_complexity Low_complexity 3 57 0 2299 255 119 72 chr12 47457796 47458302 -96328153 - HAL1 LINE L1 -853 1654 1173 2360 113 0 0 chr12 47458302 47458612 -96327843 - AluSx SINE Alu -2 310 1 2299 255 119 72 chr12 47458612 47459597 -96326858 - HAL1 LINE L1 -1334 1173 94 1881 177 26 16 chr12 47459611 47460076 -96326379 - MLT2B1 LTR ERVL 0 515 1 239 299 0 0 chr12 47460076 47460143 -96326312 - HAL1 LINE L1 -2431 76 10 387 335 77 12 chr12 47460379 47460549 -96325906 - MIR SINE MIR -25 237 57 2323 105 0 7 chr12 47460560 47460866 -96325589 - AluSx SINE Alu -8 304 1 28 0 0 0 chr12 47461016 47461044 -96325411 + AT_rich Low_complexity Low_complexity 1 28 0 983 168 102 31 chr12 47461065 47461261 -96325194 - AluJb SINE Alu -19 293 84 25 0 0 0 chr12 47461489 47461514 -96324941 + AT_rich Low_complexity Low_complexity 1 25 0 277 211 92 18 chr12 47462135 47462244 -96324211 - L1ME4a LINE L1 -56 6065 5949 561 170 35 26 chr12 47462251 47462419 -96324036 + MER34B LTR ERV1 4 185 -357 727 85 9 0 chr12 47462423 47462529 -96323926 - L1PA4 LINE L1 -2 6153 6047 1087 30 0 0 chr12 47462529 47462664 -96323791 + L1PA4 LINE L1 5841 5975 -180 1175 144 28 11 chr12 47462694 47462875 -96323580 - AluJo SINE Alu -126 186 3 772 210 20 109 chr12 47462902 47463310 -96323145 + MER34 LTR ERV1 177 541 -1 919 209 34 5 chr12 47463315 47463521 -96322934 - MLT2E LTR ERVL -2 626 415 856 167 68 0 chr12 47463549 47463711 -96322744 + AluJb SINE Alu 137 309 -3 1030 116 32 16 chr12 47463998 47464187 -96322268 + L1MB2 LINE L1 5980 6171 0 22 35 0 0 chr12 47464284 47464313 -96322142 + AT_rich Low_complexity Low_complexity 1 29 0 588 204 0 0 chr12 47464319 47464422 -96322033 - AluJb SINE Alu -209 103 1 2164 110 66 87 chr12 47466956 47467393 -96319062 - MSTA LTR MaLR 0 428 1 808 130 0 48 chr12 47467487 47467633 -96318822 + FRAM SINE Alu 1 139 -37 313 315 0 0 chr12 47467929 47468021 -96318434 + L1MC4 LINE L1 6612 6703 -1339 210 91 0 0 chr12 47468021 47468054 -96318401 + (TA)n Simple_repeat Simple_repeat 1 33 0 910 97 179 0 chr12 47468070 47468204 -96318251 - AluSc SINE Alu -151 158 1 547 246 61 41 chr12 47468344 47468678 -96317777 - L1MEd LINE L1 -5283 836 388 1322 158 65 72 chr12 47468722 47469014 -96317441 - AluJo SINE Alu -16 296 7 698 284 45 45 chr12 47469031 47469344 -96317111 - L1MEd LINE L1 -5785 334 22 428 300 80 32 chr12 47469503 47469753 -96316702 + L2 LINE L2 3051 3312 -1 403 207 72 8 chr12 47469751 47469877 -96316578 - MIR SINE MIR -63 145 43 * 41997 41 1 2 chr12 47470115 47476284 -96310171 + L1PA3 LINE L1 7 6155 0 26 30 0 0 chr12 47476456 47476489 -96309966 + AT_rich Low_complexity Low_complexity 1 33 0 270 73 0 0 chr12 47476726 47476767 -96309688 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6418 20 0 0 chr12 47476929 47477667 -96308788 + L1PA2 LINE L1 5417 6154 -1 50 0 0 0 chr12 47477885 47477935 -96308520 + AT_rich Low_complexity Low_complexity 1 50 0 1459 167 65 22 chr12 47477935 47478210 -96308245 - AluJo SINE Alu -25 287 1 2624 46 0 0 chr12 47478983 47479285 -96307170 - AluY SINE Alu -9 302 1 557 257 81 40 chr12 47479328 47479550 -96306905 - L3 LINE CR1 -109 1468 1238 2092 173 83 130 chr12 47479913 47480676 -96305779 + LTR8A LTR ERV1 1 727 0 210 342 25 0 chr12 47480801 47480880 -96305575 - L2 LINE L2 -1 3271 3191 7328 118 19 2 chr12 47481560 47483430 -96303025 - L1MA3 LINE L1 0 6305 4404 224 290 32 0 chr12 47483525 47483587 -96302868 - L2 LINE L2 -5 3267 3204 354 207 92 11 chr12 47483856 47483943 -96302512 + MLT1I LTR MaLR 278 371 -38 400 268 148 16 chr12 47484061 47484244 -96302211 + L1MC4a LINE L1 5701 5907 -1901 4357 130 37 3 chr12 47484324 47485003 -96301452 - L1MB3 LINE L1 -9 6174 5473 584 234 0 0 chr12 47485015 47485122 -96301333 - FLAM_A SINE Alu -20 122 16 333 158 24 37 chr12 47485134 47485216 -96301239 - L1MB3 LINE L1 -682 5498 5418 1315 189 16 12 chr12 47485492 47485741 -96300714 + MIR SINE MIR 13 262 0 1627 128 180 80 chr12 47487711 47487752 -96298703 - MSTA LTR MaLR 0 428 393 2068 120 0 71 chr12 47487752 47488078 -96298377 + AluSx SINE Alu 1 303 -9 1627 128 180 80 chr12 47488078 47488260 -96298195 - MSTA LTR MaLR -35 393 231 2492 75 3 0 chr12 47488260 47488567 -96297888 - AluY SINE Alu -3 308 1 1627 128 180 80 chr12 47488567 47488731 -96297724 - MSTA LTR MaLR -197 231 1 368 302 56 8 chr12 47489576 47489702 -96296753 - L2 LINE L2 -1 3271 3140 310 315 77 7 chr12 47489938 47490081 -96296374 + MIR3 SINE MIR 31 183 -25 21 0 0 0 chr12 47492215 47492236 -96294219 + AT_rich Low_complexity Low_complexity 1 21 0 783 207 0 15 chr12 47492950 47493085 -96293370 + FLAM_A SINE Alu 1 133 0 2023 116 0 62 chr12 47493272 47493592 -96292863 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr12 47493895 47493924 -96292531 + AT_rich Low_complexity Low_complexity 1 29 0 261 294 35 0 chr12 47494045 47494130 -96292325 + MIR3 SINE MIR 100 187 -21 266 289 230 7 chr12 47494463 47494598 -96291857 + L1MC4a LINE L1 5496 5660 -2148 2091 107 126 27 chr12 47494621 47494994 -96291461 - MSTA LTR MaLR -18 410 1 404 238 66 40 chr12 47495039 47495190 -96291265 + LTR50 LTR ERVL 1 155 -640 287 297 25 8 chr12 47495484 47495602 -96290853 + LTR33A LTR ERVL 404 523 0 625 264 43 22 chr12 47495602 47495833 -96290622 + L1MC4a LINE L1 5689 5924 -1884 244 301 41 0 chr12 47496800 47496873 -96289582 - MLT2E LTR ERVL -2 626 551 903 142 34 0 chr12 47496903 47497051 -96289404 - MER30 DNA MER1_type -77 153 1 618 215 49 21 chr12 47497177 47497321 -96289134 - MLT2E LTR ERVL -452 176 29 1687 158 9 48 chr12 47497396 47497712 -96288743 + AluJb SINE Alu 3 306 -6 1999 266 172 4 chr12 47497717 47498427 -96288028 + L2 LINE L2 1964 2792 -522 288 333 75 13 chr12 47498409 47498568 -96287887 + L2 LINE L2 3011 3179 -134 * 1459 201 44 10 chr12 47499034 47499159 -96287296 + AluJb SINE Alu 1 120 -192 369 0 0 0 chr12 47499159 47499200 -96287255 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1459 201 44 10 chr12 47499200 47499368 -96287087 + AluJb SINE Alu 120 304 -8 375 228 69 41 chr12 47499518 47499663 -96286792 + MIR3 SINE MIR 19 167 -41 1886 154 0 3 chr12 47499907 47500229 -96286226 - AluSx SINE Alu 0 321 1 295 216 69 39 chr12 47500585 47500687 -96285768 + MER94 DNA DNA 3 107 -27 264 135 0 0 chr12 47500994 47501031 -96285424 + Alu SINE Alu 1 37 -263 433 132 0 15 chr12 47501452 47501520 -96284935 + AluS SINE Alu 2 68 -244 664 246 110 4 chr12 47501543 47501779 -96284676 - MIR SINE MIR -1 261 1 1945 118 6 70 chr12 47502146 47502461 -96283994 + AluSx SINE Alu 1 295 -17 1197 145 5 33 chr12 47503847 47504061 -96282394 + AluJo SINE Alu 90 297 -15 2043 128 0 18 chr12 47506561 47506843 -96279612 + AluSx SINE Alu 1 277 -35 1754 131 29 4 chr12 47507580 47507890 -96278565 + AluSx SINE Alu 1 317 0 221 350 117 20 chr12 47508203 47508400 -96278055 - MIR SINE MIR -45 217 2 923 269 140 49 chr12 47508529 47509001 -96277454 + MLT1H1 LTR MaLR 41 555 0 2303 101 0 0 chr12 47509654 47509951 -96276504 - AluSq SINE Alu -16 297 1 538 268 35 14 chr12 47510083 47510225 -96276230 - MIR SINE MIR -89 173 29 2398 62 0 0 chr12 47511231 47511520 -96274935 - AluY SINE Alu -22 289 1 1384 189 65 18 chr12 47511589 47511864 -96274591 - AluJo SINE Alu -24 288 1 210 211 0 0 chr12 47512346 47512384 -96274071 + MIR SINE MIR 220 257 -5 419 344 25 6 chr12 47513052 47513215 -96273240 - MER5A DNA MER1_type 0 189 24 569 96 0 0 chr12 47513347 47513420 -96273035 - AluS SINE Alu -236 77 5 1568 124 4 25 chr12 47513423 47513665 -96272790 + AluSg/x SINE Alu 70 306 -4 458 309 80 36 chr12 47513721 47513970 -96272485 + MIR SINE MIR 3 262 0 213 39 0 0 chr12 47514052 47514078 -96272377 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 380 252 67 52 chr12 47514240 47514375 -96272080 + MIR3 SINE MIR 15 151 -57 387 280 112 24 chr12 47514449 47514574 -96271881 + MIR SINE MIR 29 164 -98 519 138 0 0 chr12 47514577 47514657 -96271798 - L1M2 LINE L1 -526 5774 5695 296 214 43 14 chr12 47514662 47514732 -96271723 + MIR SINE MIR 191 262 0 201 156 0 0 chr12 47515021 47515053 -96271402 - MIR SINE MIR -164 98 67 376 253 0 0 chr12 47515127 47515218 -96271237 - L1MA4A LINE L1 -23 6280 6190 2602 170 19 27 chr12 47515223 47515735 -96270720 - L1MA4A LINE L1 -181 6122 5615 1786 117 7 43 chr12 47516036 47516336 -96270119 - MLT1B LTR MaLR 0 390 102 235 89 54 107 chr12 47516362 47516418 -96270037 + MLT1B LTR MaLR 62 114 -276 * 592 137 0 69 chr12 47516416 47516518 -96269937 - MLT1B LTR MaLR -295 95 1 436 208 169 32 chr12 47517002 47517156 -96269299 + MIR SINE MIR 18 192 -70 532 262 8 0 chr12 47517175 47517301 -96269154 + L2 LINE L2 3187 3313 0 490 214 48 24 chr12 47517356 47517482 -96268973 - MER5B DNA MER1_type 0 178 50 298 221 228 24 chr12 47517586 47517713 -96268742 + L2 LINE L2 3161 3313 0 2387 86 0 0 chr12 47517754 47518058 -96268397 - AluY SINE Alu -7 304 1 2154 121 3 7 chr12 47519194 47519500 -96266955 - AluSx SINE Alu -7 305 1 256 332 77 31 chr12 47519808 47520004 -96266451 + L2 LINE L2 2875 3079 -193 823 172 25 0 chr12 47520360 47520517 -96265938 + MER5A DNA MER1_type 2 162 -27 181 259 19 0 chr12 47522239 47522293 -96264162 - L2 LINE L2 -5 3308 3254 543 199 15 129 chr12 47522403 47522604 -96263851 + MER5B DNA MER1_type 1 178 0 318 26 0 0 chr12 47523256 47523295 -96263160 + (TG)n Simple_repeat Simple_repeat 2 40 0 223 245 20 0 chr12 47523948 47523997 -96262458 - MIR3 SINE MIR -48 160 111 1253 83 0 6 chr12 47524161 47524342 -96262113 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2151 110 17 17 chr12 47524352 47524653 -96261802 - AluSp SINE Alu -12 301 1 1718 145 46 11 chr12 47524653 47524934 -96261521 - AluJb SINE Alu -20 292 1 865 212 14 106 chr12 47524966 47525258 -96261197 + L2 LINE L2 3049 3313 0 1189 208 56 10 chr12 47525522 47525810 -96260645 + Charlie4a DNA MER1_type 32 332 -176 1090 244 146 11 chr12 47525807 47525994 -96260461 + LTR33 LTR ERVL 118 278 -243 * 2668 111 14 8 chr12 47525994 47526363 -96260092 + THE1C LTR MaLR 1 371 -4 1090 244 146 11 chr12 47526363 47526531 -96259924 + LTR33 LTR ERVL 278 521 0 307 284 0 69 chr12 47526615 47526717 -96259738 - L2 LINE L2 -11 3261 3167 835 250 86 12 chr12 47526723 47526967 -96259488 - MIR SINE MIR 0 262 1 186 293 0 0 chr12 47526991 47527032 -96259423 + L2 LINE L2 3221 3261 -11 1791 25 5 0 chr12 47528085 47528285 -96258170 + L1PA5 LINE L1 5946 6146 -8 881 135 25 90 chr12 47528472 47528672 -96257783 - MER5A DNA MER1_type -2 187 1 1378 147 0 0 chr12 47528783 47528980 -96257475 + AluJb SINE Alu 1 197 -115 279 301 181 0 chr12 47529144 47529277 -96257178 - MIR SINE MIR -1 261 105 1197 236 61 31 chr12 47529624 47530072 -96256383 - MLT1C LTR MaLR 0 467 1 846 268 164 20 chr12 47530306 47530746 -96255709 + MLT1H1 LTR MaLR 44 546 -9 455 227 85 57 chr12 47531150 47531326 -96255129 - MIR SINE MIR -78 184 4 293 373 76 27 chr12 47531696 47531921 -96254534 + L2 LINE L2 2557 2792 -522 7245 48 0 11 chr12 47532497 47534119 -96252336 - L1PA7 LINE L1 -3 6151 4538 182 192 172 61 chr12 47534215 47534314 -96252141 - L2 LINE L2 -530 2784 2675 862 175 0 0 chr12 47534343 47534480 -96251975 - FRAM SINE Alu -20 156 20 27 0 0 0 chr12 47534805 47534832 -96251623 + AT_rich Low_complexity Low_complexity 1 27 0 272 311 104 0 chr12 47535855 47535961 -96250494 + L2 LINE L2 3195 3311 -2 668 203 11 91 chr12 47536266 47536344 -96250111 - MER45A DNA AcHobo -1409 172 89 3253 142 13 59 chr12 47536344 47537021 -96249434 + L1MB7 LINE L1 5525 6170 -14 668 203 11 91 chr12 47537021 47537129 -96249326 - MER45A DNA AcHobo -1492 89 1 529 193 0 76 chr12 47537251 47537370 -96249085 + MER81 DNA DNA 5 114 0 301 251 83 4 chr12 47537466 47537564 -96248891 + MER5A DNA MER1_type 3 109 -80 504 264 147 8 chr12 47537636 47537765 -96248690 + MIR3 SINE MIR 10 156 -52 225 222 133 22 chr12 47537910 47538000 -96248455 + MIR SINE MIR 163 262 0 373 317 30 24 chr12 47539556 47539622 -96246833 - MER5A DNA MER1_type -3 186 122 1494 165 20 30 chr12 47539622 47539925 -96246530 - L1MB5 LINE L1 0 6174 5875 373 317 30 24 chr12 47539925 47540025 -96246430 - MER5A DNA MER1_type -67 122 19 42446 38 1 3 chr12 47540219 47546389 -96240066 + L1PA3 LINE L1 1 6152 -3 1720 182 36 12 chr12 47546467 47546796 -96239659 + MER58B DNA MER1_type 4 340 -1 201 182 0 0 chr12 47547039 47547072 -96239383 + T-rich Low_complexity Low_complexity 1 33 0 922 223 70 77 chr12 47548258 47548543 -96237912 - MER77 LTR ERV1 -6 599 320 323 234 105 40 chr12 47549142 47549266 -96237189 - L1ME4a LINE L1 -20 6101 5970 369 301 0 39 chr12 47549297 47549400 -96237055 + L2 LINE L2 3136 3234 -38 198 250 0 33 chr12 47549486 47549546 -96236909 + L2 LINE L2 3192 3249 -64 737 279 10 10 chr12 47549558 47549766 -96236689 + MER58A DNA MER1_type 1 208 -16 2334 99 0 37 chr12 47549784 47550108 -96236347 - AluSx SINE Alu 0 312 1 453 249 45 57 chr12 47550341 47550584 -96235871 - L1ME4a LINE L1 -338 5783 5543 376 250 36 27 chr12 47553330 47553442 -96233013 - MER81 DNA DNA -1 113 1 232 204 20 0 chr12 47553707 47553756 -96232699 + T-rich Low_complexity Low_complexity 3 52 0 511 261 65 65 chr12 47553896 47554248 -96232207 - LTR16A LTR ERVL -53 397 46 345 281 61 0 chr12 47554354 47554468 -96231987 + MIR SINE MIR 130 250 -12 23 0 0 0 chr12 47554986 47555009 -96231446 + AT_rich Low_complexity Low_complexity 1 23 0 294 87 0 0 chr12 47555532 47555578 -96230877 + (TC)n Simple_repeat Simple_repeat 2 47 0 351 0 0 0 chr12 47555579 47555618 -96230837 + (CA)n Simple_repeat Simple_repeat 2 40 0 488 322 7 7 chr12 47555690 47555833 -96230622 + MER5A DNA MER1_type 47 189 0 926 299 164 27 chr12 47555974 47556523 -96229932 + L3 LINE CR1 666 1289 -288 653 307 24 32 chr12 47557751 47558002 -96228453 + MIR SINE MIR 14 262 0 321 89 0 0 chr12 47558398 47558443 -96228012 + (TG)n Simple_repeat Simple_repeat 1 45 0 214 158 0 26 chr12 47558824 47558862 -96227593 + CT-rich Low_complexity Low_complexity 3 39 0 2301 95 3 13 chr12 47559402 47559718 -96226737 - AluSp SINE Alu 0 313 1 430 274 114 30 chr12 47560058 47560259 -96226196 + MIR SINE MIR 1 218 -44 351 0 0 0 chr12 47560301 47560340 -96226115 + (CA)n Simple_repeat Simple_repeat 2 40 0 1937 168 0 0 chr12 47560340 47560631 -96225824 - AluJb SINE Alu -21 291 1 336 303 133 0 chr12 47560631 47560796 -96225659 - MIR SINE MIR -57 205 19 1489 157 0 0 chr12 47560903 47561165 -96225290 + L1MA3 LINE L1 6044 6305 0 475 190 13 69 chr12 47561398 47561564 -96224891 - L1MD3 LINE L1 0 8042 7902 302 169 0 0 chr12 47561609 47561668 -96224787 - L1MA4 LINE L1 -48 6252 6194 4287 209 118 38 chr12 47561708 47562134 -96224321 - L1MC4 LINE L1 -141 7901 7511 2095 121 3 10 chr12 47562134 47562483 -96223972 + AluSx SINE Alu 1 312 0 4287 209 118 38 chr12 47562483 47563489 -96222966 - L1MC4 LINE L1 -531 7511 6354 557 263 93 17 chr12 47563487 47563723 -96222732 - L1ME2 LINE L1 -10 6154 5901 * 290 301 8 90 chr12 47564096 47564229 -96222226 - L2 LINE L2 0 3313 3192 2493 66 0 0 chr12 47564245 47564548 -96221907 - AluY SINE Alu -8 303 1 946 202 57 26 chr12 47564563 47564607 -96221848 - L1MCa LINE L1 -4613 1994 1953 1645 190 41 19 chr12 47564607 47564970 -96221485 + MLT1A2 LTR MaLR 4 374 0 946 202 57 26 chr12 47564970 47565301 -96221154 - L1MCa LINE L1 -4654 1953 1419 815 225 6 22 chr12 47565818 47565996 -96220459 + MER45A DNA AcHobo 4 178 0 346 252 74 45 chr12 47567175 47567337 -96219118 - MER5A DNA MER1_type -3 175 4 321 125 0 0 chr12 47567709 47567765 -96218690 + (TG)n Simple_repeat Simple_repeat 1 56 0 552 79 0 69 chr12 47568107 47568208 -96218247 - L1PA8 LINE L1 -2 6170 6077 23 0 0 0 chr12 47568208 47568231 -96218224 + AT_rich Low_complexity Low_complexity 1 23 0 1270 217 40 39 chr12 47568242 47568478 -96217977 - L1ME2 LINE L1 -27 6143 5909 1474 131 4 4 chr12 47568478 47568737 -96217718 - L1MA4 LINE L1 -5 6295 6037 1270 217 40 39 chr12 47568737 47568983 -96217472 - L1ME2 LINE L1 -261 5909 5626 2361 112 0 0 chr12 47569158 47569470 -96216985 + AluSx SINE Alu 1 312 0 24 32 0 0 chr12 47569806 47569837 -96216618 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 47570417 47570442 -96216013 + AT_rich Low_complexity Low_complexity 1 25 0 2053 118 34 0 chr12 47570443 47570765 -96215690 - L1PA16 LINE L1 -9 6157 5825 468 305 30 0 chr12 47570767 47570898 -96215557 - MIR SINE MIR -116 146 12 253 258 45 0 chr12 47571844 47571910 -96214545 + MIR SINE MIR 88 156 -106 1591 195 80 11 chr12 47571910 47572259 -96214196 + THE1C LTR MaLR 1 373 -2 9893 124 8 36 chr12 47572263 47573886 -96212569 + THE1C-int LTR MaLR 3 1580 0 1586 150 96 37 chr12 47573886 47574240 -96212215 + THE1C LTR MaLR 1 375 0 2202 210 104 11 chr12 47574241 47574769 -96211686 + MLT1E LTR MaLR 17 593 0 431 245 11 0 chr12 47574770 47574864 -96211591 + MIR SINE MIR 152 246 -16 267 307 143 14 chr12 47574948 47575088 -96211367 - L3 LINE CR1 -18 1559 1402 2408 202 84 18 chr12 47575524 47576256 -96210199 + L1ME3 LINE L1 5377 6160 -2 948 177 30 25 chr12 47576398 47576601 -96209854 - AluJo SINE Alu -23 289 86 202 250 18 18 chr12 47578736 47578792 -96207663 - L3 LINE CR1 -289 1288 1233 575 293 120 34 chr12 47579143 47579560 -96206895 - MLT1J LTR MaLR -58 453 1 776 347 55 17 chr12 47580686 47581104 -96205351 - L3 LINE CR1 -705 872 439 1086 151 0 13 chr12 47581469 47581628 -96204827 + FRAM SINE Alu 3 159 -7 358 260 0 13 chr12 47581662 47581739 -96204716 - L2 LINE L2 -50 3222 3147 653 261 42 56 chr12 47581743 47581958 -96204497 + MIR SINE MIR 1 212 -50 331 250 0 0 chr12 47582715 47582795 -96203660 + MER103 DNA DNA 41 120 -46 245 243 122 9 chr12 47583557 47583664 -96202791 - L1ME4a LINE L1 -4 6117 5999 297 275 66 0 chr12 47584292 47584383 -96202072 - MLT1B LTR MaLR -102 288 192 369 0 0 0 chr12 47584389 47584430 -96202025 + (GA)n Simple_repeat Simple_repeat 1 41 0 271 77 19 39 chr12 47584442 47584494 -96201961 + (GGAGA)n Simple_repeat Simple_repeat 5 55 0 287 94 118 59 chr12 47584498 47584583 -96201872 - MLT1B LTR MaLR -206 184 95 2146 111 10 0 chr12 47584601 47584890 -96201565 - AluSx SINE Alu -20 292 1 1993 181 7 22 chr12 47584890 47585515 -96200940 - L1M2 LINE L1 -684 5628 5016 2220 140 13 67 chr12 47585519 47585969 -96200486 - MER67D LTR ERV1 -88 426 1 378 0 0 0 chr12 47585969 47586011 -96200444 + (TG)n Simple_repeat Simple_repeat 2 43 0 468 0 0 0 chr12 47586245 47586297 -96200158 + (A)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr12 47586352 47586373 -96200082 + AT_rich Low_complexity Low_complexity 1 21 0 1478 164 22 22 chr12 47587162 47587431 -96199024 + AluJo SINE Alu 1 269 -43 2133 94 44 0 chr12 47587612 47587909 -96198546 - AluSx SINE Alu -2 310 1 441 288 0 25 chr12 47588396 47588514 -96197941 + L2 LINE L2 3198 3312 -1 266 250 10 60 chr12 47588530 47588630 -96197825 - MARNA DNA Mariner -91 495 401 35 24 0 0 chr12 47589186 47589228 -96197227 + AT_rich Low_complexity Low_complexity 1 42 0 278 295 29 69 chr12 47589349 47589522 -96196933 - L1ME3A LINE L1 -35 6529 6364 815 242 130 28 chr12 47589577 47589899 -96196556 - L1ME3A LINE L1 -207 6357 6003 485 272 6 6 chr12 47589993 47590166 -96196289 - L1ME3A LINE L1 -1424 5116 4944 * 766 215 99 79 chr12 47590165 47590273 -96196182 - L1MDa LINE L1 -4460 2261 2157 870 178 6 0 chr12 47590273 47590430 -96196025 - L1MB7 LINE L1 -19 6165 6008 766 215 99 79 chr12 47590430 47590746 -96195709 - L1MDa LINE L1 -4564 2157 1790 2366 81 0 7 chr12 47590790 47591100 -96195355 - AluSq SINE Alu -5 308 1 1850 268 62 10 chr12 47591100 47591727 -96194728 - L1MDa LINE L1 -5644 1077 418 * 2592 262 66 43 chr12 47591718 47593315 -96193140 - L1MEc LINE L1 -1869 4346 2714 258 290 48 0 chr12 47593386 47593510 -96192945 - L1MEc LINE L1 -3609 2606 2477 651 286 130 42 chr12 47593543 47594067 -96192388 - L1MEc LINE L1 -3946 2450 1881 1430 152 112 85 chr12 47595173 47595620 -96190835 - MLT1C LTR MaLR -4 463 5 370 234 203 25 chr12 47596592 47596750 -96189705 - MIR SINE MIR -11 251 66 227 330 174 9 chr12 47596859 47596974 -96189481 + MIR SINE MIR 1 134 -128 24 0 0 0 chr12 47596974 47596998 -96189457 + AT_rich Low_complexity Low_complexity 1 24 0 204 298 83 0 chr12 47597020 47597104 -96189351 + MIR SINE MIR 122 212 -50 220 123 0 70 chr12 47599615 47599672 -96186783 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 225 297 31 0 chr12 47600675 47600739 -96185716 - MIR SINE MIR -149 113 48 180 228 70 18 chr12 47601861 47601918 -96184537 - MIR SINE MIR -13 249 190 261 0 0 0 chr12 47602032 47602061 -96184394 + (T)n Simple_repeat Simple_repeat 1 29 0 28 0 0 0 chr12 47602745 47602773 -96183682 + AT_rich Low_complexity Low_complexity 1 28 0 327 351 60 30 chr12 47603659 47603827 -96182628 + L2 LINE L2 1061 1233 -2081 661 241 161 89 chr12 47603833 47604051 -96182404 - MLT1K LTR MaLR -17 571 370 2138 107 0 27 chr12 47604051 47604350 -96182105 - AluSq SINE Alu -22 291 1 661 241 161 89 chr12 47604350 47604461 -96181994 - MLT1K LTR MaLR -218 370 213 2553 104 10 31 chr12 47604461 47604844 -96181611 - THE1C LTR MaLR 0 375 1 661 241 161 89 chr12 47604844 47604861 -96181594 - MLT1K LTR MaLR -375 213 199 428 339 63 58 chr12 47604962 47605600 -96180855 + L2 LINE L2 1220 1860 -1454 334 385 14 14 chr12 47605616 47605764 -96180691 + L2 LINE L2 2717 2864 -450 1634 182 66 0 chr12 47605798 47606116 -96180339 - MER2 DNA MER2_type 0 345 7 612 260 89 40 chr12 47606132 47606577 -96179878 - LTR33 LTR ERVL -14 507 1 308 326 30 119 chr12 47606593 47606964 -96179491 + L2 LINE L2 2935 3272 0 1824 211 17 6 chr12 47606978 47607339 -96179116 + MLT1A1 LTR MaLR 1 365 0 2485 221 106 17 chr12 47608355 47609485 -96176970 + MER69 DNA AcHobo 2 2526 0 242 218 55 0 chr12 47609547 47609602 -96176853 - L2 LINE L2 -218 3054 2997 2561 138 21 26 chr12 47610051 47610478 -96175977 - MSTB LTR MaLR -1 425 1 374 350 17 8 chr12 47610543 47610660 -96175795 - L2 LINE L2 0 3313 3196 419 340 101 24 chr12 47610985 47611361 -96175094 - L2 LINE L2 -555 2759 2355 1276 147 15 10 chr12 47611361 47611559 -96174896 + AluJo SINE Alu 84 282 -30 207 0 0 0 chr12 47611562 47611585 -96174870 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 437 328 52 30 chr12 47611590 47611895 -96174560 - L2 LINE L2 -957 2357 2046 324 287 79 18 chr12 47612917 47613081 -96173374 - MIR SINE MIR -53 209 36 21 0 0 0 chr12 47613153 47613174 -96173281 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 47613803 47613832 -96172623 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 47614530 47614560 -96171895 + AT_rich Low_complexity Low_complexity 1 30 0 596 243 158 7 chr12 47614730 47614882 -96171573 + MER5A DNA MER1_type 9 183 -6 277 226 235 20 chr12 47615557 47615659 -96170796 + MER5A DNA MER1_type 43 166 -23 * 417 208 0 0 chr12 47615584 47615661 -96170794 - MER5A DNA MER1_type -80 109 33 221 354 44 62 chr12 47615933 47616207 -96170248 + L2 LINE L2 2686 2954 -360 423 0 0 0 chr12 47616320 47616367 -96170088 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2065 108 0 28 chr12 47616367 47616654 -96169801 - AluSx SINE Alu -33 279 1 1401 212 92 26 chr12 47616690 47617115 -96169340 + MLT1C LTR MaLR 8 460 -7 590 257 108 10 chr12 47617275 47617516 -96168939 - L1ME3 LINE L1 -1 6169 5907 4918 157 56 28 chr12 47617607 47618025 -96168430 - L1MA7 LINE L1 -10 6281 5876 549 246 16 0 chr12 47618025 47618151 -96168304 - FLAM_A SINE Alu -4 129 2 4918 157 56 28 chr12 47618151 47619602 -96166853 - L1MA7 LINE L1 -415 5876 4364 540 204 50 33 chr12 47619609 47619790 -96166665 - L1ME3 LINE L1 -363 5799 5616 6276 136 18 20 chr12 47619852 47621420 -96165035 - L1MA3 LINE L1 0 6305 4741 3537 235 111 13 chr12 47621420 47622231 -96164224 - L1ME2 LINE L1 -336 5828 5098 447 19 0 0 chr12 47622231 47622283 -96164172 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3537 235 111 13 chr12 47622283 47623783 -96162672 - L1ME2 LINE L1 -1066 5098 3220 787 271 54 22 chr12 47623789 47624309 -96162146 + L1ME LINE L1 793 1362 -4899 514 284 135 56 chr12 47624325 47624653 -96161802 - L2 LINE L2 -97 3216 2856 1514 191 26 66 chr12 47624653 47625031 -96161424 + MLT1A1 LTR MaLR 1 363 -2 514 284 135 56 chr12 47625031 47625058 -96161397 - L2 LINE L2 -457 2856 2833 185 306 207 0 chr12 47625145 47625256 -96161199 + L2 LINE L2 3179 3312 -1 359 317 63 21 chr12 47625329 47625471 -96160984 + L2 LINE L2 3123 3270 -2 2072 168 49 20 chr12 47626414 47626819 -96159636 + MER47B DNA MER2_type 2 418 0 337 355 104 33 chr12 47627297 47627843 -96158612 + L2 LINE L2 2066 2650 -664 892 286 85 41 chr12 47627845 47628282 -96158173 - L2 LINE L2 0 3313 2858 541 236 236 5 chr12 47628336 47628539 -96157916 - MIR SINE MIR -12 250 1 * 2927 245 111 29 chr12 47628539 47628938 -96157517 - L2 LINE L2 -568 2746 2382 2066 138 0 3 chr12 47628938 47629242 -96157213 - AluSg SINE Alu -7 303 1 2927 245 111 29 chr12 47629242 47629780 -96156675 - L2 LINE L2 -932 2382 1731 797 274 77 24 chr12 47629784 47630123 -96156332 - LTR16A1 LTR ERVL -4 453 97 231 278 56 11 chr12 47630198 47630288 -96156167 - L2 LINE L2 -1607 1707 1614 514 274 12 37 chr12 47630456 47630620 -96155835 + MIR SINE MIR 68 227 -35 239 40 60 20 chr12 47631842 47631892 -96154563 + GA-rich Low_complexity Low_complexity 5 56 0 515 191 39 182 chr12 47631913 47632144 -96154311 - MIR SINE MIR 0 262 65 480 336 99 39 chr12 47632336 47632648 -96153807 - L2 LINE L2 -8 3264 2934 394 323 61 22 chr12 47632841 47633603 -96152852 + L1MC4a LINE L1 4756 5580 -541 542 325 83 36 chr12 47633682 47634128 -96152327 + MLT1K LTR MaLR 121 587 -1 444 270 121 5 chr12 47634129 47634345 -96152110 + L1MC4a LINE L1 5603 5824 -297 33 56 0 0 chr12 47634509 47634563 -96151892 + AT_rich Low_complexity Low_complexity 1 54 0 285 287 32 11 chr12 47634616 47634710 -96151745 - MER5A DNA MER1_type -1 188 93 396 297 67 30 chr12 47634737 47634902 -96151553 - L2 LINE L2 -587 2727 2557 235 256 85 24 chr12 47634878 47634960 -96151495 + MIR SINE MIR 168 254 -8 * 1897 135 6 68 chr12 47635183 47635509 -96150946 - AluJb SINE Alu -6 306 1 847 305 114 22 chr12 47635540 47636192 -96150263 + L1M4 LINE L1 2760 3467 -2679 491 251 20 4 chr12 47636350 47636593 -96149862 + L1M4 LINE L1 3683 3965 -2181 337 284 200 18 chr12 47636878 47637103 -96149352 + L1MC/D LINE L1 5254 5519 -2266 270 173 19 0 chr12 47637103 47637155 -96149300 + L2 LINE L2 3200 3252 -61 493 205 0 43 chr12 47637319 47637436 -96149019 + MLT1H LTR MaLR 216 327 -222 224 193 126 126 chr12 47637916 47637990 -96148465 + MIR SINE MIR 74 150 -112 2199 90 3 13 chr12 47637990 47638332 -96148123 + AluSq SINE Alu 1 313 0 224 193 126 126 chr12 47638332 47638376 -96148079 + MIR SINE MIR 149 192 -70 374 314 42 0 chr12 47639070 47639188 -96147267 - L3 LINE CR1 -39 1538 1416 307 161 222 0 chr12 47639757 47639838 -96146617 + L2 LINE L2 3211 3309 -4 1888 104 87 37 chr12 47640059 47640414 -96146041 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr12 47641041 47641062 -96145393 + AT_rich Low_complexity Low_complexity 1 21 0 1703 165 25 0 chr12 47641587 47641872 -96144583 - AluJb SINE Alu -20 292 1 4670 137 47 36 chr12 47641882 47642842 -96143613 - L1MA8 LINE L1 -5 6286 5317 655 247 43 56 chr12 47642843 47643074 -96143381 - L2 LINE L2 -1 3312 3085 27972 125 27 16 chr12 47643260 47649327 -96137128 - L1PA7 LINE L1 -8 6146 12 32 0 0 0 chr12 47649347 47649379 -96137076 + AT_rich Low_complexity Low_complexity 1 32 0 1970 141 3 7 chr12 47649379 47649677 -96136778 - AluJb SINE Alu -15 297 1 546 130 43 0 chr12 47649677 47649792 -96136663 - L1MA8 LINE L1 -814 5332 5213 705 272 63 21 chr12 47650752 47650991 -96135464 - MIR SINE MIR -11 251 3 2127 132 0 0 chr12 47651216 47651528 -96134927 + AluSx SINE Alu 1 312 0 182 283 19 38 chr12 47652432 47652485 -96133970 - L2 LINE L2 -37 3235 3184 419 294 7 44 chr12 47652984 47653120 -96133335 - L2 LINE L2 -5 3267 3137 6089 93 9 5 chr12 47653590 47655354 -96131101 - L1PA11 LINE L1 -6 6168 4390 319 213 93 9 chr12 47655872 47655980 -96130475 - MER112 DNA MER1_type -1 259 143 2244 142 12 39 chr12 47656617 47656885 -96129570 + MER57A LTR ERV1 2 257 -146 2277 105 7 0 chr12 47656885 47657179 -96129276 - AluSg SINE Alu -14 296 1 2244 142 12 39 chr12 47657179 47657320 -96129135 + MER57A LTR ERV1 257 400 -3 213 233 46 0 chr12 47657369 47657422 -96129033 - MIR SINE MIR -106 156 101 202 314 0 0 chr12 47659556 47659607 -96126848 + L2 LINE L2 3247 3297 -16 716 230 70 25 chr12 47659748 47659948 -96126507 - MIR SINE MIR 0 262 54 272 241 0 0 chr12 47660092 47660146 -96126309 - MLT1L LTR MaLR -239 376 323 296 257 124 0 chr12 47661288 47661393 -96125062 + MIR SINE MIR 90 207 -55 705 237 88 5 chr12 47661590 47661784 -96124671 - MER63A DNA MER1_type 0 210 1 837 237 39 5 chr12 47661824 47662031 -96124424 - MER58A DNA MER1_type -10 214 1 2250 125 0 0 chr12 47662149 47662454 -96124001 - AluSg SINE Alu -5 305 1 300 289 24 0 chr12 47662479 47662562 -96123893 + L1M4 LINE L1 4001 4085 -2061 21 36 0 0 chr12 47662724 47662752 -96123703 + AT_rich Low_complexity Low_complexity 1 28 0 3278 148 19 54 chr12 47662840 47663474 -96122981 - LTR9 LTR ERV1 0 612 1 2005 165 59 28 chr12 47663474 47663977 -96122478 + MLT2A2 LTR ERVL 5 543 -11 6897 65 4 4 chr12 47664131 47665414 -96121041 - L1PA7 LINE L1 0 6154 4876 207 0 0 0 chr12 47665459 47665482 -96120973 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2197 88 38 21 chr12 47665540 47665880 -96120575 + L1PB2 LINE L1 5800 6145 -6 1259 162 102 0 chr12 47665958 47666223 -96120232 + L1MA5 LINE L1 6009 6300 0 277 301 62 9 chr12 47668217 47668330 -96118125 - LTR67 LTR ERVL -17 540 422 606 329 28 19 chr12 47668736 47668952 -96117503 + MIR SINE MIR 13 230 -32 189 329 43 0 chr12 47669029 47669099 -96117356 + MIR3 SINE MIR 124 196 -12 31 76 0 0 chr12 47669700 47669766 -96116689 + AT_rich Low_complexity Low_complexity 1 66 0 208 358 83 8 chr12 47669767 47669887 -96116568 - L2 LINE L2 -1 3312 3184 225 0 0 0 chr12 47669897 47669922 -96116533 + (CAA)n Simple_repeat Simple_repeat 2 26 0 364 268 16 8 chr12 47670024 47670147 -96116308 + GA-rich Low_complexity Low_complexity 6 129 0 1739 170 7 20 chr12 47670207 47670507 -96115948 + AluSx SINE Alu 3 298 -14 310 264 19 9 chr12 47670900 47671006 -96115449 + L1ME LINE L1 5729 5835 -335 25 0 0 0 chr12 47671325 47671350 -96115105 + AT_rich Low_complexity Low_complexity 1 25 0 590 276 81 17 chr12 47671417 47671591 -96114864 - MIR SINE MIR -73 189 5 1262 225 73 40 chr12 47673094 47673542 -96112913 + MLT1C LTR MaLR 1 467 0 1173 258 123 41 chr12 47673619 47674207 -96112248 - L2 LINE L2 0 3313 2702 289 178 11 44 chr12 47674231 47674321 -96112134 + (TA)n Simple_repeat Simple_repeat 2 88 0 6521 7 0 0 chr12 47674481 47675241 -96111214 + L1HS LINE L1 5396 6155 0 264 137 0 0 chr12 47675242 47675293 -96111162 + (A)n Simple_repeat Simple_repeat 1 51 0 1444 168 46 13 chr12 47675420 47675724 -96110731 - MER46B DNA MER2_type 0 236 48 4389 126 50 70 chr12 47675825 47676708 -96109747 - THE1C-int LTR MaLR -712 868 4 1982 127 67 28 chr12 47676711 47677072 -96109383 - THE1C LTR MaLR 0 375 1 539 258 45 64 chr12 47677086 47677779 -96108676 - L1MC4 LINE L1 -1200 6608 5958 4443 79 8 2 chr12 47678104 47678123 -96108332 - L1PA10 LINE L1 0 6168 6151 261 0 0 0 chr12 47678123 47678152 -96108303 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 4443 79 8 2 chr12 47678152 47678730 -96107725 - L1PA10 LINE L1 -17 6151 5567 1959 183 59 24 chr12 47678732 47679191 -96107264 - MLT1D LTR MaLR -28 477 3 192 212 0 0 chr12 47681012 47681078 -96105377 + (TAA)n Simple_repeat Simple_repeat 1 66 0 499 208 188 14 chr12 47683633 47683777 -96102678 - MIR SINE MIR -74 188 20 2469 251 57 36 chr12 47683784 47685124 -96101331 - L1ME3A LINE L1 -5 6165 4798 33 43 0 0 chr12 47685276 47685323 -96101132 + AT_rich Low_complexity Low_complexity 1 47 0 2215 82 34 0 chr12 47686088 47686382 -96100073 - AluSq SINE Alu -9 304 1 21 0 0 0 chr12 47686466 47686487 -96099968 + AT_rich Low_complexity Low_complexity 1 21 0 384 246 144 46 chr12 47686652 47686847 -96099608 + MLT1J LTR MaLR 150 363 -148 231 250 42 0 chr12 47686877 47686949 -96099506 + MLT1J LTR MaLR 429 503 -8 379 231 51 77 chr12 47687810 47687966 -96098489 + Charlie2 DNA MER1_type 174 325 -2457 627 250 11 0 chr12 47688022 47688210 -96098245 + Charlie2 DNA MER1_type 1916 2105 -757 628 74 21 0 chr12 47688995 47689090 -96097365 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 769 209 109 31 chr12 47689101 47689459 -96096996 + Charlie2 DNA MER1_type 2188 2573 -289 728 162 52 113 chr12 47689459 47689574 -96096881 + L1MB3 LINE L1 5582 5678 -505 2098 98 30 0 chr12 47689574 47689870 -96096585 - AluSx SINE Alu -7 305 1 728 162 52 113 chr12 47689870 47689983 -96096472 + L1MB3 LINE L1 5678 5796 -387 2153 156 11 0 chr12 47690048 47690427 -96096028 + L1MB3 LINE L1 5801 6183 0 321 218 48 40 chr12 47690504 47690628 -96095827 - HsTC2 DNA Tc2 -45 1853 1729 279 133 0 0 chr12 47690680 47690725 -96095730 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 1412 173 0 74 chr12 47690726 47691009 -96095446 - AluJo SINE Alu -37 275 14 234 158 0 0 chr12 47691029 47691067 -96095388 - HsTC2 DNA Tc2 -561 1337 1300 279 133 0 0 chr12 47691266 47691311 -96095144 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 1503 163 0 74 chr12 47691312 47691595 -96094860 - AluJo SINE Alu -37 275 14 234 158 0 0 chr12 47691615 47691653 -96094802 - HsTC2 DNA Tc2 -561 1337 1300 589 208 17 17 chr12 47691737 47691915 -96094540 + Charlie2 DNA MER1_type 2650 2827 -35 1645 168 4 15 chr12 47692247 47692521 -96093934 - AluJb SINE Alu -41 271 1 733 302 61 18 chr12 47693701 47693979 -96092476 - ERVL LTR ERVL -617 5147 4858 780 219 81 45 chr12 47693986 47694339 -96092116 - MLT1G1 LTR MaLR -71 524 92 189 0 0 0 chr12 47695563 47695584 -96090871 + (A)n Simple_repeat Simple_repeat 1 21 0 326 370 103 0 chr12 47696453 47696618 -96089837 + MIR3 SINE MIR 17 198 -10 602 245 125 5 chr12 47697108 47697292 -96089163 + Charlie1 DNA MER1_type 1 206 -2555 * 2395 161 25 10 chr12 47697269 47697748 -96088707 + Charlie1 DNA MER1_type 2055 2540 -221 258 32 0 0 chr12 47697755 47697786 -96088669 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6437 21 0 0 chr12 47697786 47698557 -96087898 - L1PA4 LINE L1 -18 6137 5367 9700 26 2 0 chr12 47698557 47699763 -96086692 + L1P LINE L1 3644 4851 -1295 8061 19 1 1 chr12 47699863 47700860 -96085595 + L1P LINE L1 4330 5326 -820 735 185 26 31 chr12 47700867 47701094 -96085361 + Charlie1 DNA MER1_type 2536 2761 0 494 265 25 35 chr12 47701145 47701345 -96085110 + MARNA DNA Mariner 380 577 -9 29 28 0 0 chr12 47702377 47702413 -96084042 + AT_rich Low_complexity Low_complexity 1 36 0 495 87 0 0 chr12 47702515 47702584 -96083871 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 424 280 37 0 chr12 47702584 47702691 -96083764 - L2 LINE L2 -5 3267 3157 276 308 34 8 chr12 47702829 47702946 -96083509 - HAL1 LINE L1 -144 2363 2244 195 354 69 42 chr12 47703047 47703191 -96083264 + MER5A DNA MER1_type 18 165 -24 467 276 130 70 chr12 47703476 47703976 -96082479 - LTR67 LTR ERVL -7 550 21 1528 180 43 53 chr12 47704324 47704465 -96081990 - MLT1B LTR MaLR 0 390 249 2113 148 64 12 chr12 47704465 47704871 -96081584 - MSTA LTR MaLR -1 427 1 1528 180 43 53 chr12 47704871 47705123 -96081332 - MLT1B LTR MaLR -141 249 1 23 68 0 0 chr12 47705850 47705894 -96080561 + AT_rich Low_complexity Low_complexity 1 44 0 2841 177 82 2 chr12 47705926 47706141 -96080314 + MER6A DNA MER2_type 1 197 -668 285 75 0 0 chr12 47706141 47706181 -96080274 + (TG)n Simple_repeat Simple_repeat 2 41 0 2841 177 82 2 chr12 47706181 47706525 -96079930 + MER6A DNA MER2_type 197 605 0 343 172 0 0 chr12 47707669 47707727 -96078728 - L1PA15-16 LINE L1 -6791 58 1 13508 130 19 113 chr12 47707733 47710617 -96075838 + L1PA16 LINE L1 135 2748 -4101 1420 145 8 4 chr12 47710635 47710883 -96075572 + L1P4 LINE L1 5566 5814 -352 * 11770 206 34 14 chr12 47710870 47713094 -96073361 + L1PA16 LINE L1 2745 5069 -1800 13752 102 2 2 chr12 47713094 47715909 -96070546 - L1PA8 LINE L1 -2 6170 3358 11770 206 34 14 chr12 47715909 47717737 -96068718 + L1PA16 LINE L1 5069 6860 -9 21 57 0 0 chr12 47717982 47718017 -96068438 + AT_rich Low_complexity Low_complexity 1 35 0 1517 213 41 78 chr12 47718074 47718700 -96067755 + MLT1E2 LTR MaLR 65 617 -9 198 0 0 0 chr12 47719125 47719147 -96067308 + (T)n Simple_repeat Simple_repeat 1 22 0 293 367 65 10 chr12 47719158 47719357 -96067098 + MIR SINE MIR 53 262 0 24 32 0 0 chr12 47719527 47719558 -96066897 + AT_rich Low_complexity Low_complexity 1 31 0 606 221 36 0 chr12 47719730 47719870 -96066585 + MER119 DNA MER1_type 207 351 -232 928 233 77 39 chr12 47719913 47720352 -96066103 + MLT1C LTR MaLR 26 494 -11 590 192 98 49 chr12 47720380 47720417 -96066038 + MER119 DNA MER1_type 348 382 -201 1797 138 11 11 chr12 47720417 47720746 -96065709 - AluSx SINE Alu 0 331 3 590 192 98 49 chr12 47720746 47720931 -96065524 + MER119 DNA MER1_type 382 582 -1 595 305 64 13 chr12 47720939 47721267 -96065188 - L2 LINE L2 -310 3003 2657 196 196 250 36 chr12 47722046 47722102 -96064353 + L3 LINE CR1 1030 1097 -480 216 0 0 0 chr12 47722724 47722748 -96063707 + (T)n Simple_repeat Simple_repeat 1 24 0 2027 109 0 11 chr12 47723361 47723663 -96062792 - AluSx SINE Alu 0 310 12 409 324 62 18 chr12 47724071 47724296 -96062159 + L3 LINE CR1 1084 1318 -259 185 337 12 12 chr12 47724473 47724556 -96061899 + L3 LINE CR1 1305 1387 -190 267 103 0 0 chr12 47724565 47724604 -96061851 + (CATTC)n Simple_repeat Simple_repeat 2 40 0 336 217 267 6 chr12 47727548 47727709 -96058746 - LTR50 LTR ERVL -588 207 5 282 87 0 0 chr12 47727987 47728033 -96058422 + (TA)n Simple_repeat Simple_repeat 1 46 0 735 166 18 71 chr12 47728254 47728423 -96058032 - AluJo SINE Alu -152 160 1 1547 309 78 17 chr12 47728690 47729395 -96057060 - ERVL LTR ERVL -851 4913 4166 498 333 27 37 chr12 47729609 47729903 -96056552 + ERVL LTR ERVL 1490 1780 -3984 189 233 274 0 chr12 47729945 47730018 -96056437 + L2 LINE L2 3221 3313 0 238 250 25 0 chr12 47731124 47731204 -96055251 + L1ME3 LINE L1 6078 6159 -3 181 206 0 0 chr12 47731397 47731431 -96055024 - L2 LINE L2 -13 3300 3267 769 345 134 27 chr12 47731953 47732902 -96053553 - L2 LINE L2 -1 3271 2212 709 338 153 13 chr12 47732950 47733157 -96053298 - L2 LINE L2 -1378 1936 1759 198 103 0 0 chr12 47733157 47733186 -96053269 + (TG)n Simple_repeat Simple_repeat 2 30 0 709 338 153 13 chr12 47733186 47733730 -96052725 - L2 LINE L2 -1555 1759 1080 241 363 90 52 chr12 47733839 47734282 -96052173 + L2 LINE L2 444 903 -2411 2586 164 25 50 chr12 47735090 47735646 -96050809 + LTR64 LTR ERVK 1 542 -16 752 150 16 8 chr12 47735649 47735776 -96050679 + AluJb SINE Alu 4 131 -181 210 322 11 11 chr12 47735948 47736035 -96050420 + L2 LINE L2 3225 3311 -2 1586 174 24 40 chr12 47736232 47736611 -96049844 - MLT1A2 LTR MaLR 0 374 2 370 239 131 54 chr12 47737253 47737322 -96049133 - L1ME4a LINE L1 -2 6119 6057 2092 136 0 0 chr12 47737322 47737658 -96048797 + AluSc SINE Alu 1 309 0 370 239 131 54 chr12 47737658 47737810 -96048645 - L1ME4a LINE L1 -64 6057 5881 618 288 126 43 chr12 47738117 47738443 -96048012 + L2 LINE L2 2946 3298 -15 4717 132 20 7 chr12 47738454 47739385 -96047070 - L1P4 LINE L1 -714 5460 4517 4509 92 29 8 chr12 47739385 47740045 -96046410 + L1PA11 LINE L1 5496 6172 -2 186 104 0 104 chr12 47740261 47740309 -96046146 + L2 LINE L2 3193 3235 -78 1293 234 49 67 chr12 47740332 47740970 -96045485 + L1MC4a LINE L1 5958 6583 -1225 207 0 0 0 chr12 47741367 47741390 -96045065 + (T)n Simple_repeat Simple_repeat 1 23 0 474 332 68 15 chr12 47741394 47741599 -96044856 + MIR SINE MIR 47 262 0 1688 202 78 51 chr12 47742908 47743394 -96043061 - MLT1D LTR MaLR 0 505 7 1065 99 0 28 chr12 47743713 47743895 -96042560 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 21 57 0 0 chr12 47743970 47744005 -96042450 + AT_rich Low_complexity Low_complexity 1 35 0 1916 136 7 34 chr12 47744698 47744993 -96041462 - AluSx SINE Alu -25 287 1 2025 140 3 0 chr12 47745638 47745923 -96040532 - AluSx SINE Alu -26 286 1 447 301 61 12 chr12 47746026 47746189 -96040266 + L3 LINE CR1 1050 1220 -357 404 331 61 0 chr12 47746250 47746398 -96040057 + L2 LINE L2 3152 3308 -5 604 316 144 22 chr12 47746676 47746996 -96039459 + L3 LINE CR1 1218 1576 -1 1087 219 140 0 chr12 47747835 47748186 -96038269 - Charlie5 DNA MER1_type 0 2622 2223 312 306 238 0 chr12 47748701 47748907 -96037548 - LTR50 LTR ERVL -540 255 1 890 242 19 5 chr12 47751083 47751294 -96035161 - MER20 DNA MER1_type -2 217 4 728 117 0 0 chr12 47751479 47751590 -96034865 - MER57B LTR ERV1 0 434 324 590 147 32 0 chr12 47751599 47751694 -96034761 - AluY SINE Alu -213 98 1 2157 196 26 4 chr12 47751695 47752150 -96034305 - L1ME1 LINE L1 -57 6109 5645 1115 249 36 74 chr12 47752150 47752339 -96034116 + MLT1D LTR MaLR 1 196 -309 1982 107 3 13 chr12 47752339 47752639 -96033816 + L1PA12 LINE L1 5858 6154 -14 1115 249 36 74 chr12 47752639 47752974 -96033481 + MLT1D LTR MaLR 196 505 0 467 105 21 95 chr12 47752981 47753020 -96033435 - L1ME LINE L1 -533 5633 5593 2056 96 7 33 chr12 47753020 47753321 -96033134 - AluY SINE Alu -18 293 1 467 105 21 95 chr12 47753321 47753376 -96033079 - L1ME LINE L1 -573 5593 5546 1562 200 55 18 chr12 47753969 47754354 -96032101 - MER31B LTR ERV1 -25 441 43 2140 115 0 3 chr12 47754354 47754642 -96031813 + AluSx SINE Alu 1 287 -25 2468 49 0 0 chr12 47758227 47758514 -96027941 + AluY SINE Alu 1 287 -24 228 127 270 0 chr12 47758534 47758597 -96027858 - MADE1 DNA Mariner 0 80 1 22 0 0 0 chr12 47758700 47758722 -96027733 + AT_rich Low_complexity Low_complexity 1 22 0 2348 114 0 0 chr12 47761570 47761869 -96024586 - AluSq SINE Alu -14 299 1 322 247 82 40 chr12 47762275 47762561 -96023894 - HAL1b LINE L1 -68 2439 757 26 50 0 0 chr12 47762615 47762655 -96023800 + AT_rich Low_complexity Low_complexity 1 40 0 594 274 39 99 chr12 47763162 47763578 -96022877 - HAL1 LINE L1 -1171 1336 946 1048 115 49 11 chr12 47764835 47765018 -96021437 + MER30B DNA MER1_type 1 190 0 524 323 167 4 chr12 47765133 47765396 -96021059 - L2 LINE L2 0 3313 3008 393 284 0 0 chr12 47765424 47765512 -96020943 + MER119 DNA MER1_type 47 134 -449 6055 148 55 19 chr12 47765692 47766806 -96019649 + THE1C-int LTR MaLR 427 1580 0 1864 139 60 38 chr12 47766806 47767173 -96019282 + THE1C LTR MaLR 1 375 0 294 227 235 0 chr12 47767174 47767293 -96019162 + L1MD3 LINE L1 6638 6784 -1211 * 1565 161 123 0 chr12 47767277 47767569 -96018886 + L1M4c LINE L1 1 328 -6056 * 6808 130 20 15 chr12 47767567 47768690 -96017765 + L1M4c LINE L1 1269 2400 -3982 1540 179 67 50 chr12 47768690 47769047 -96017408 - MLT1A1 LTR MaLR -2 363 1 6808 130 20 15 chr12 47769047 47769203 -96017252 + L1M4c LINE L1 2400 2554 -3828 1224 226 40 0 chr12 47769208 47769305 -96017150 + AluJb SINE Alu 26 118 -194 207 69 0 0 chr12 47769305 47769334 -96017121 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1224 226 40 0 chr12 47769334 47769488 -96016967 + AluJb SINE Alu 118 287 -25 9984 216 25 33 chr12 47769498 47772310 -96014145 + L1MA6 LINE L1 2615 5450 -1086 2241 113 3 3 chr12 47772310 47772611 -96013844 - AluSp SINE Alu -12 301 1 9984 216 25 33 chr12 47772611 47772636 -96013819 + L1MA6 LINE L1 5450 5474 -1062 2345 134 3 24 chr12 47772636 47773008 -96013447 + THE1B LTR MaLR 1 364 0 9984 216 25 33 chr12 47773008 47774121 -96012334 + L1MA6 LINE L1 5474 6536 0 918 195 4 105 chr12 47774131 47774408 -96012047 + L1MC4a LINE L1 6732 6961 -847 261 176 77 66 chr12 47774492 47774583 -96011872 + L2 LINE L2 3220 3311 -2 1308 233 35 25 chr12 47776345 47776749 -96009706 + LTR52 LTR ERVL 9 416 -5 13567 178 47 47 chr12 47776753 47778463 -96007992 + LTR52-int LTR ERVL 1 1710 -1846 2464 37 40 3 chr12 47778463 47778763 -96007692 + AluY SINE Alu 1 311 0 13567 178 47 47 chr12 47778763 47779232 -96007223 + LTR52-int LTR ERVL 1710 2178 -1378 2583 68 0 3 chr12 47779232 47779542 -96006913 + AluY SINE Alu 1 309 -2 864 190 18 12 chr12 47779551 47779714 -96006741 + FAM SINE Alu 1 164 -11 13567 178 47 47 chr12 47779714 47780604 -96005851 + LTR52-int LTR ERVL 2185 3081 -475 2841 96 22 2 chr12 47780608 47781077 -96005378 + MER1A DNA MER1_type 2 529 0 1312 216 7 30 chr12 47781077 47781373 -96005082 + LTR52-int LTR ERVL 3077 3365 -191 2354 183 20 41 chr12 47781378 47781886 -96004569 + MLT1D LTR MaLR 6 502 -3 528 205 8 16 chr12 47781932 47782054 -96004401 + LTR52-int LTR ERVL 3436 3556 0 1274 220 62 15 chr12 47782056 47782456 -96003999 + LTR52 LTR ERVL 3 421 0 261 109 0 0 chr12 47783008 47783054 -96003401 + (TG)n Simple_repeat Simple_repeat 1 46 0 238 266 0 31 chr12 47783060 47783124 -96003331 + G-rich Low_complexity Low_complexity 6 67 0 269 366 56 21 chr12 47784157 47784299 -96002156 - L2 LINE L2 -1 3271 3125 266 360 23 0 chr12 47786408 47786494 -95999961 + MIR SINE MIR 27 114 -94 2756 231 47 10 chr12 47786499 47787119 -95999336 - MER82 DNA MER2_type 0 653 11 13245 48 8 1 chr12 47787345 47789762 -95996693 + L1PA5 LINE L1 3727 6154 0 337 341 62 16 chr12 47789817 47789946 -95996509 - MLT2E LTR ERVL -455 173 39 236 297 31 16 chr12 47790565 47790629 -95995826 + MIR3 SINE MIR 9 73 -135 2972 231 48 32 chr12 47791941 47793002 -95993453 - L1ME3 LINE L1 -6 6156 5081 2641 23 3 0 chr12 47793322 47793622 -95992833 - AluY SINE Alu -10 301 1 1012 296 76 20 chr12 47794147 47794593 -95991862 + LTR33 LTR ERVL 3 473 -48 1036 118 106 0 chr12 47794800 47794961 -95991494 - L1PB4 LINE L1 -6 6150 5973 323 323 0 10 chr12 47795238 47795337 -95991118 + L2 LINE L2 3216 3313 0 231 304 64 24 chr12 47795656 47795781 -95990674 - L1ME LINE L1 -280 5841 5712 317 310 71 82 chr12 47797317 47797598 -95988857 + L1ME3A LINE L1 552 829 -5290 579 292 30 23 chr12 47797656 47797957 -95988498 + L1ME3A LINE L1 895 1197 -4922 472 313 50 71 chr12 47797964 47798335 -95988120 + L1ME3A LINE L1 1352 1716 -4594 3193 137 14 39 chr12 47798335 47798899 -95987556 - MER44D DNA MER2_type 0 605 1 2734 257 86 54 chr12 47798911 47800904 -95985551 + L1ME3A LINE L1 2540 4600 -1529 253 61 20 20 chr12 47800904 47800953 -95985502 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2734 257 86 54 chr12 47800953 47801006 -95985449 + L1ME3A LINE L1 4600 4650 -1479 1105 201 55 26 chr12 47801029 47801493 -95984962 - MER39 LTR ERV1 -26 639 1 662 303 73 36 chr12 47801509 47801863 -95984592 + L1ME3A LINE L1 4679 5063 -1066 1463 199 0 15 chr12 47801863 47802130 -95984325 - AluJb SINE Alu -49 263 1 662 303 73 36 chr12 47802130 47802333 -95984122 + L1ME3A LINE L1 5063 5257 -872 879 245 48 14 chr12 47802339 47802633 -95983822 + L1ME3A LINE L1 5282 5585 -560 489 228 105 19 chr12 47802675 47802837 -95983618 - MER63A DNA MER1_type -8 202 27 805 219 93 36 chr12 47802838 47803117 -95983338 + L1ME3A LINE L1 5586 5880 -273 271 175 70 0 chr12 47803121 47803178 -95983277 - L1M4 LINE L1 -932 5214 5154 610 261 0 0 chr12 47803193 47803354 -95983101 + L1M4 LINE L1 4971 5131 -1015 2106 113 75 42 chr12 47803369 47803774 -95982681 - MER51A LTR ERV1 0 634 144 219 36 0 0 chr12 47803774 47803802 -95982653 + (TG)n Simple_repeat Simple_repeat 1 28 0 2106 113 75 42 chr12 47803802 47803951 -95982504 - MER51A LTR ERV1 -490 144 1 22 0 0 0 chr12 47804609 47804631 -95981824 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr12 47804900 47804945 -95981510 + AT_rich Low_complexity Low_complexity 1 45 0 1414 143 112 56 chr12 47804963 47805250 -95981205 + AluJo SINE Alu 1 303 -9 1022 213 41 0 chr12 47805337 47805534 -95980921 + MER20 DNA MER1_type 2 206 -13 355 148 33 5 chr12 47806056 47806177 -95980278 + MER53 DNA DNA 1 186 -3 259 325 44 18 chr12 47806648 47806762 -95979693 + MER5A DNA MER1_type 72 188 -1 2118 100 3 48 chr12 47806872 47807183 -95979272 - AluSq SINE Alu -16 297 1 252 0 0 0 chr12 47807272 47807300 -95979155 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 47807840 47807863 -95978592 + AT_rich Low_complexity Low_complexity 1 23 0 328 277 99 0 chr12 47808822 47808923 -95977532 + MIR SINE MIR 79 189 -73 305 314 9 0 chr12 47808932 47809037 -95977418 + L1MC4a LINE L1 5707 5812 -1996 734 259 138 77 chr12 47809058 47809774 -95976681 + L1MC4a LINE L1 6204 6985 -976 2389 53 20 0 chr12 47809774 47809902 -95976553 + AluY SINE Alu 1 125 -186 180 0 0 0 chr12 47809902 47809922 -95976533 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2389 53 20 0 chr12 47809922 47810097 -95976358 + AluY SINE Alu 125 310 -1 734 259 138 77 chr12 47810097 47810357 -95976098 + L1MC4a LINE L1 6985 7228 -733 251 303 0 0 chr12 47810421 47810497 -95975958 + L1MC4 LINE L1 7413 7488 -554 37 86 0 0 chr12 47811107 47811200 -95975255 + AT_rich Low_complexity Low_complexity 1 93 0 306 0 0 0 chr12 47812836 47812870 -95973585 + (TG)n Simple_repeat Simple_repeat 2 35 0 397 394 0 18 chr12 47813277 47813447 -95973008 + L2 LINE L2 2887 3053 -219 1503 197 10 33 chr12 47814772 47815077 -95971378 + AluJo SINE Alu 1 298 -14 5586 128 12 16 chr12 47815109 47815448 -95971007 + L1PA16 LINE L1 5156 5495 -671 2137 117 3 3 chr12 47815448 47815739 -95970716 + AluSx SINE Alu 1 291 -21 5586 128 12 16 chr12 47815739 47816405 -95970050 + L1PA16 LINE L1 5495 6157 -9 239 323 118 0 chr12 47816490 47816583 -95969872 - L2 LINE L2 -6 3266 3163 1275 268 70 39 chr12 47816590 47816992 -95969463 + L1MEc LINE L1 776 1164 -5232 2228 87 0 0 chr12 47816992 47817322 -95969133 + AluSc SINE Alu 3 332 0 1275 268 70 39 chr12 47817322 47817755 -95968700 + L1MEc LINE L1 1164 1640 -4756 * 1604 235 31 49 chr12 47817751 47817935 -95968520 + L1ME1 LINE L1 5623 5809 -357 1997 106 3 18 chr12 47817935 47818250 -95968205 + AluSx SINE Alu 3 313 0 1604 235 31 49 chr12 47818250 47818613 -95967842 + L1ME1 LINE L1 5809 6161 -5 2808 157 73 58 chr12 47818635 47819293 -95967162 + L1MB1 LINE L1 5457 6124 -44 789 213 7 9 chr12 47819498 47819664 -95966791 - L1P4 LINE L1 -486 5675 5511 363 73 0 0 chr12 47820723 47820778 -95965677 + (CA)n Simple_repeat Simple_repeat 2 56 0 24 77 0 0 chr12 47822816 47822868 -95963587 + AT_rich Low_complexity Low_complexity 1 52 0 1670 124 4 0 chr12 47824614 47824863 -95961592 - HSMAR2 DNA Mariner -62 1240 991 2261 147 12 31 chr12 47824872 47825124 -95961331 - HSMAR2 DNA Mariner -885 417 174 2143 103 0 0 chr12 47825124 47825464 -95960991 - AluY SINE Alu 0 340 1 2261 147 12 31 chr12 47825464 47825631 -95960824 - HSMAR2 DNA Mariner -1128 174 5 462 366 6 6 chr12 47825631 47825806 -95960649 - MIR3 SINE MIR -3 205 31 394 215 13 0 chr12 47826271 47826350 -95960105 - L2 LINE L2 0 3313 3234 4798 147 46 27 chr12 47826477 47827150 -95959305 - L1MB3 LINE L1 0 6183 5487 2183 121 0 16 chr12 47827150 47827455 -95959000 - AluSx SINE Alu -12 300 1 4798 147 46 27 chr12 47827455 47827694 -95958761 - L1MB3 LINE L1 -696 5487 5254 2794 127 145 2 chr12 47827704 47828167 -95958288 - MER1A DNA MER1_type 0 529 1 1864 218 62 17 chr12 47828168 47828650 -95957805 - L1MB3 LINE L1 -896 5250 4747 324 309 145 19 chr12 47828701 47829018 -95957437 - L1ME1 LINE L1 -280 5886 5530 1855 139 168 24 chr12 47830764 47831138 -95955317 - MSTA LTR MaLR 0 428 1 3411 153 72 55 chr12 47832132 47832877 -95953578 - L1MCa LINE L1 -4965 1461 701 989 155 17 17 chr12 47832877 47833058 -95953397 - L1PB3 LINE L1 -1 6153 5973 3411 153 72 55 chr12 47833058 47833105 -95953350 - L1MCa LINE L1 -5725 701 656 1600 174 33 0 chr12 47833215 47833514 -95952941 - L1MCa LINE L1 -6098 328 20 196 250 19 0 chr12 47834370 47834422 -95952033 + MIR SINE MIR 90 142 -120 36 77 0 0 chr12 47834498 47834576 -95951879 + AT_rich Low_complexity Low_complexity 1 78 0 530 340 68 8 chr12 47835014 47835264 -95951191 + L3 LINE CR1 1310 1574 -3 3420 182 106 46 chr12 47835538 47835961 -95950494 + MER21B LTR ERV1 2 398 -465 2068 126 0 7 chr12 47835961 47836273 -95950182 - AluSx SINE Alu 0 310 1 3420 182 106 46 chr12 47836273 47836660 -95949795 + MER21B LTR ERV1 398 862 -1 32 67 0 0 chr12 47837273 47837333 -95949122 + AT_rich Low_complexity Low_complexity 1 60 0 5690 120 23 8 chr12 47837339 47838454 -95948001 - L1PB2 LINE L1 -3 6148 5016 237 344 22 50 chr12 47838556 47838736 -95947719 - MIR SINE MIR -68 194 20 216 384 46 33 chr12 47841631 47841938 -95944517 - L2 LINE L2 -1859 1455 1145 777 215 14 108 chr12 47842473 47842761 -95943694 + MLT2B1 LTR ERVL 7 267 -253 2152 149 27 65 chr12 47842834 47843277 -95943178 - MSTB LTR MaLR 0 426 1 382 219 252 0 chr12 47843277 47843396 -95943059 + MLT2B1 LTR ERVL 371 520 0 40319 38 21 1 chr12 47844611 47850652 -95935803 - L1PA2 LINE L1 0 6155 7 40471 38 22 1 chr12 47850774 47856800 -95929655 + L1PA2 LINE L1 1 6155 0 29 0 0 0 chr12 47857251 47857280 -95929175 + AT_rich Low_complexity Low_complexity 1 29 0 6399 75 4 12 chr12 47857281 47858242 -95928213 - L1PA8A LINE L1 -18 6113 5154 180 308 134 12 chr12 47858353 47858525 -95927930 + MIR SINE MIR 69 261 -1 250 388 12 38 chr12 47858721 47858881 -95927574 + MIR SINE MIR 36 191 -71 819 264 19 9 chr12 47859769 47859981 -95926474 + MIR SINE MIR 32 245 -17 2164 78 3 0 chr12 47860055 47860358 -95926097 - AluY SINE Alu 0 304 1 3346 264 163 33 chr12 47862120 47863477 -95922978 + L2 LINE L2 1127 2659 -655 2335 110 0 0 chr12 47863598 47863908 -95922547 + AluSg SINE Alu 1 310 0 382 239 45 0 chr12 47864131 47864219 -95922236 + L2 LINE L2 2748 2839 -475 276 233 52 0 chr12 47864219 47864335 -95922120 - L1M4 LINE L1 -1722 4424 4303 496 198 0 0 chr12 47864339 47864425 -95922030 - 5S rRNA rRNA -31 90 5 1124 328 52 17 chr12 47864430 47864896 -95921559 + L2 LINE L2 2832 3313 0 438 69 0 0 chr12 47866743 47866801 -95919654 + (TA)n Simple_repeat Simple_repeat 2 59 0 342 0 0 0 chr12 47866854 47866892 -95919563 + (TA)n Simple_repeat Simple_repeat 2 39 0 1046 155 61 0 chr12 47867455 47867636 -95918819 + L1PA16 LINE L1 5964 6155 -11 26 30 0 0 chr12 47867639 47867672 -95918783 + AT_rich Low_complexity Low_complexity 1 33 0 642 217 68 41 chr12 47867949 47868170 -95918285 + MLT1D LTR MaLR 6 232 -273 1093 209 13 8 chr12 47868402 47868641 -95917814 + MLT1D LTR MaLR 263 502 -3 402 263 32 55 chr12 47868922 47869224 -95917231 + MLT1I LTR MaLR 81 406 -3 1974 144 21 39 chr12 47869360 47869742 -95916713 + THE1C LTR MaLR 1 375 0 282 116 0 0 chr12 47870231 47870274 -95916181 + (T)n Simple_repeat Simple_repeat 1 43 0 27 29 0 0 chr12 47871586 47871620 -95914835 + AT_rich Low_complexity Low_complexity 1 34 0 206 319 43 11 chr12 47872539 47872633 -95913822 + MIR SINE MIR 153 249 -13 184 378 27 0 chr12 47872794 47872868 -95913587 - MIR SINE MIR -132 130 55 791 217 50 0 chr12 47872878 47873076 -95913379 + MER58A DNA MER1_type 1 208 -16 608 251 31 58 chr12 47874043 47874234 -95912221 + MIR SINE MIR 64 249 -13 2296 85 3 0 chr12 47875075 47875369 -95911086 - AluSc SINE Alu -14 295 1 286 292 18 13 chr12 47876851 47876999 -95909456 + MLT1J2 LTR MaLR 76 260 -251 860 126 25 10 chr12 47877128 47877326 -95909129 + CT-rich Low_complexity Low_complexity 1 201 0 341 143 0 0 chr12 47877326 47877375 -95909080 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 695 173 17 22 chr12 47877375 47877554 -95908901 + CT-rich Low_complexity Low_complexity 2 179 0 317 306 82 8 chr12 47877678 47877812 -95908643 + L1ME4a LINE L1 5800 5943 -178 228 212 24 12 chr12 47877838 47877923 -95908532 + (TA)n Simple_repeat Simple_repeat 2 87 0 2004 189 73 15 chr12 47877923 47878377 -95908078 - MLT2B1 LTR ERVL -40 480 1 301 255 166 35 chr12 47878377 47878522 -95907933 + L1ME4a LINE L1 5954 6117 -4 1691 191 15 55 chr12 47878663 47879066 -95907389 - MLT1B LTR MaLR -2 388 2 25 65 0 0 chr12 47879147 47879193 -95907262 + AT_rich Low_complexity Low_complexity 1 46 0 311 250 94 6 chr12 47879377 47879557 -95906898 + L1ME4a LINE L1 5923 6118 -3 40429 40 22 1 chr12 47879664 47885689 -95900766 + L1PA2 LINE L1 4 6153 -2 261 0 0 0 chr12 47885696 47885725 -95900730 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 215 319 145 36 chr12 47885913 47886161 -95900294 - L2 LINE L2 -181 3091 2817 186 222 0 0 chr12 47886514 47886550 -95899905 + L2 LINE L2 3268 3303 -10 319 282 115 13 chr12 47887127 47887283 -95899172 - MIR SINE MIR -9 253 82 277 277 84 12 chr12 47887317 47887400 -95899055 + L2 LINE L2 3153 3241 -31 21 0 0 0 chr12 47887704 47887725 -95898730 + AT_rich Low_complexity Low_complexity 1 21 0 278 315 27 0 chr12 47888511 47888584 -95897871 + MIR3 SINE MIR 81 155 -53 27 0 0 0 chr12 47888584 47888611 -95897844 + AT_rich Low_complexity Low_complexity 1 27 0 324 233 89 133 chr12 47888669 47889103 -95897352 - MLT1H1 LTR MaLR -91 458 4 5592 169 5 12 chr12 47889469 47891278 -95895177 - L1PA16 LINE L1 -3 6163 4364 24 0 0 0 chr12 47891308 47891332 -95895123 + AT_rich Low_complexity Low_complexity 1 24 0 964 227 14 0 chr12 47891450 47891666 -95894789 - L1 LINE L1 -1807 4339 4121 352 327 32 32 chr12 47891866 47892022 -95894433 + L2 LINE L2 3140 3295 -18 181 213 0 21 chr12 47892252 47892299 -95894156 - L2 LINE L2 -51 3262 3217 2494 175 35 2 chr12 47892592 47893043 -95893412 - MLT1C LTR MaLR 0 467 2 234 286 0 0 chr12 47893046 47893109 -95893346 + MLT1L LTR MaLR 553 615 0 203 53 26 53 chr12 47893125 47893163 -95893292 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 1612 190 27 35 chr12 47894267 47894635 -95891820 - MLT1A1 LTR MaLR 0 365 1 188 131 0 197 chr12 47895909 47895970 -95890485 + L2 LINE L2 3265 3313 0 800 264 53 9 chr12 47896227 47896454 -95890001 + MIR SINE MIR 12 248 -14 2234 86 3 55 chr12 47896618 47896944 -95889511 - AluY SINE Alu -2 309 1 2948 227 75 14 chr12 47897304 47898229 -95888226 - L1ME1 LINE L1 0 6166 5177 878 180 39 3 chr12 47898242 47898495 -95887960 + MLT1A1 LTR MaLR 19 363 -2 6794 222 44 28 chr12 47898501 47900596 -95885859 - L1ME1 LINE L1 -981 5165 3037 203 0 0 36 chr12 47900633 47900661 -95885794 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2014 129 3 3 chr12 47900661 47900941 -95885514 - AluSx SINE Alu -32 280 1 200 178 0 44 chr12 47903083 47903128 -95883327 + CT-rich Low_complexity Low_complexity 1 43 0 181 314 12 58 chr12 47903407 47903493 -95882962 - L2 LINE L2 -2 3311 3230 245 211 138 37 chr12 47903754 47903854 -95882601 + L2 LINE L2 3193 3306 -7 2274 96 7 0 chr12 47903854 47904157 -95882298 - AluSq SINE Alu -8 305 1 376 268 106 21 chr12 47904189 47904331 -95882124 + MIR SINE MIR 96 249 -13 385 315 118 66 chr12 47904383 47905044 -95881411 - L2 LINE L2 -40 3232 2521 1734 178 18 0 chr12 47905082 47905363 -95881092 + AluJo SINE Alu 2 287 -25 36 53 0 0 chr12 47905363 47905420 -95881035 + AT_rich Low_complexity Low_complexity 1 57 0 188 261 65 0 chr12 47905773 47905819 -95880636 + L2 LINE L2 3222 3270 -2 1133 241 73 21 chr12 47905922 47906304 -95880151 + LTR16A1 LTR ERVL 56 457 0 2291 120 28 19 chr12 47906421 47906780 -95879675 - THE1B LTR MaLR -2 362 1 11735 88 13 3 chr12 47906794 47908352 -95878103 - THE1B-int LTR MaLR -6 1574 1 2387 114 16 25 chr12 47908352 47908719 -95877736 - THE1B LTR MaLR 0 364 1 406 271 19 9 chr12 47908806 47908913 -95877542 + MLT1J LTR MaLR 74 181 -330 570 274 48 27 chr12 47909001 47909187 -95877268 + MLT1J LTR MaLR 316 505 -6 310 259 65 14 chr12 47909211 47909350 -95877105 + MER104 DNA Tc2 35 180 0 1910 226 102 18 chr12 47909377 47910046 -95876409 - Charlie7 DNA MER1_type -124 2488 1764 661 254 74 109 chr12 47910039 47910634 -95875821 - Charlie7 DNA MER1_type -2034 578 5 * 496 245 168 7 chr12 47910791 47910946 -95875509 - MER5A DNA MER1_type 0 189 10 355 247 13 13 chr12 47911063 47911140 -95875315 - L2 LINE L2 0 3272 3196 1371 166 0 4 chr12 47911321 47911556 -95874899 - MSTA-int LTR MaLR -1343 237 4 2071 129 114 33 chr12 47911559 47911954 -95874501 - MSTA LTR MaLR 0 428 2 592 299 91 17 chr12 47912038 47912279 -95874176 - MIR SINE MIR -2 260 2 401 333 45 0 chr12 47912303 47912437 -95874018 - L1MC4a LINE L1 -1892 5916 5769 207 0 0 0 chr12 47912437 47912460 -95873995 + (TA)n Simple_repeat Simple_repeat 1 23 0 401 333 45 0 chr12 47912460 47912526 -95873929 - L1MC4a LINE L1 -2039 5769 5707 2352 146 55 5 chr12 47912774 47913178 -95873277 + MSTB LTR MaLR 1 424 -2 328 301 99 58 chr12 47913422 47913867 -95872588 + L1M4 LINE L1 2971 3433 -2713 1500 139 27 4 chr12 47914416 47914675 -95871780 - L1PB4 LINE L1 -18 6138 5874 489 335 28 24 chr12 47914711 47914959 -95871496 + MIR SINE MIR 2 250 -12 335 306 32 16 chr12 47915000 47915124 -95871331 + L2 LINE L2 3188 3313 0 230 244 0 0 chr12 47916296 47916341 -95870114 + polypurine Low_complexity Low_complexity 2 46 0 503 265 65 126 chr12 47918043 47918264 -95868191 - MER102b DNA MER1_type -1087 341 143 1352 150 26 136 chr12 47918264 47918610 -95867845 + AluYb8 SINE Alu 1 308 0 503 265 65 126 chr12 47918610 47918697 -95867758 - MER102b DNA MER1_type -1285 143 52 265 277 0 0 chr12 47919546 47919611 -95866844 + LTR67 LTR ERVL 2 66 -491 21 36 0 0 chr12 47919615 47919643 -95866812 + AT_rich Low_complexity Low_complexity 1 28 0 3302 171 32 5 chr12 47919938 47920505 -95865950 + MER7C DNA MER2_type 1 582 -20 582 259 48 76 chr12 47920558 47921103 -95865352 + L1ME LINE L1 805 1368 -4893 680 219 25 74 chr12 47921216 47921458 -95864997 + L1MC4 LINE L1 37 266 -6130 400 239 9 0 chr12 47921457 47921566 -95864889 + L1MC4 LINE L1 5349 5458 -2396 * 3015 115 52 52 chr12 47921584 47922079 -95864376 + MER1A DNA MER1_type 35 529 0 1208 253 85 36 chr12 47922079 47922775 -95863680 + L1MC4 LINE L1 5448 6191 -44 531 200 39 45 chr12 47922671 47922826 -95863629 + L1MA10 LINE L1 6247 6400 -3 * 256 315 84 0 chr12 47922822 47923000 -95863455 + L1ME LINE L1 1493 1685 -4576 * 467 304 70 0 chr12 47923446 47923676 -95862779 + L1ME LINE L1 2204 2449 -3631 887 289 156 24 chr12 47923880 47924436 -95862019 - L1ME4a LINE L1 -221 5900 5255 999 259 53 47 chr12 47924461 47924933 -95861522 + L1ME LINE L1 2461 2938 -3142 2012 140 0 3 chr12 47924933 47925226 -95861229 + AluSx SINE Alu 17 308 -4 999 259 53 47 chr12 47925226 47925262 -95861193 + L1ME LINE L1 2938 2972 -3108 436 278 81 7 chr12 47925278 47925493 -95860962 + MER106B DNA MER1_type 1 1058 -1 240 213 21 11 chr12 47925509 47925603 -95860852 + L1ME LINE L1 3005 3099 -2981 1207 216 14 7 chr12 47925610 47925893 -95860562 + L1MB7 LINE L1 2592 2876 -3270 522 222 24 0 chr12 47925898 47926024 -95860431 + L1MB7 LINE L1 4704 4832 -1314 * 1747 189 72 18 chr12 47926020 47926562 -95859893 + L1MB7 LINE L1 5550 6181 -3 916 271 161 13 chr12 47926571 47926881 -95859574 + MLT1G3 LTR MaLR 141 496 -34 531 204 0 0 chr12 47926948 47927046 -95859409 + MSTC LTR MaLR 1 98 -330 2196 223 34 22 chr12 47927051 47927553 -95858902 + MSTD-int LTR MaLR 1228 1735 0 969 193 14 3 chr12 47927553 47927849 -95858606 + MSTD LTR MaLR 1 384 -12 3085 278 73 37 chr12 47927856 47930402 -95856053 + L1ME LINE L1 3135 5766 -289 1026 152 53 86 chr12 47930725 47930969 -95855486 - MER46A DNA MER2_type 0 236 1 228 182 23 0 chr12 47931854 47931898 -95854557 - L2 LINE L2 -2 3270 3226 237 337 139 0 chr12 47935896 47935997 -95850458 - MIR3 SINE MIR -91 117 3 187 188 16 16 chr12 47936010 47936074 -95850381 + (TA)n Simple_repeat Simple_repeat 2 65 0 630 298 56 25 chr12 47936481 47936837 -95849618 + L1ME4a LINE L1 5511 5877 -244 974 162 20 25 chr12 47937292 47937490 -95848965 + L1PB2 LINE L1 5941 6137 -14 1161 141 47 13 chr12 47937540 47937774 -95848681 - L1MA8 LINE L1 -7 6284 6043 406 312 241 0 chr12 47938378 47938660 -95847795 - LTR33A LTR ERVL -1 522 173 1209 279 130 43 chr12 47938663 47938760 -95847695 + MER69 DNA AcHobo 3 90 -2436 2511 53 0 13 chr12 47938760 47939064 -95847391 - AluY SINE Alu -11 300 1 1209 279 130 43 chr12 47939064 47939475 -95846980 + MER69 DNA AcHobo 90 555 -1971 1322 220 92 19 chr12 47939489 47939958 -95846497 + MER69 DNA AcHobo 2013 2515 -11 519 318 40 20 chr12 47940139 47940337 -95846118 + L1M3 LINE L1 5509 5710 -2098 * 1045 192 65 0 chr12 47940335 47940549 -95845906 + L1PB4 LINE L1 5852 6079 -77 310 255 22 32 chr12 47940547 47940697 -95845758 + L1M3 LINE L1 5714 5826 -354 * 571 214 194 20 chr12 47940745 47940941 -95845514 + MER46C DNA MER2_type 2 231 -107 317 307 96 44 chr12 47941253 47941523 -95844932 + L2 LINE L2 2252 2535 -779 468 195 169 7 chr12 47941525 47941679 -95844776 - MER53 DNA DNA -2 187 9 228 296 24 59 chr12 47941726 47941895 -95844560 + L2 LINE L2 2572 2734 -580 476 247 178 6 chr12 47943197 47943371 -95843084 - MIR SINE MIR 0 262 59 37 106 0 0 chr12 47944481 47944623 -95841832 + AT_rich Low_complexity Low_complexity 1 142 0 1401 200 0 36 chr12 47944692 47944967 -95841488 + AluJo SINE Alu 25 289 -23 199 337 98 42 chr12 47945058 47945322 -95841133 - L2 LINE L2 -467 2847 2569 249 297 59 10 chr12 47945737 47945838 -95840617 - LTR23 LTR ERV1 0 437 332 34 0 0 0 chr12 47947801 47947835 -95838620 + AT_rich Low_complexity Low_complexity 1 34 0 403 127 0 0 chr12 47947855 47947910 -95838545 + MLT1B LTR MaLR 4 58 -332 344 167 93 148 chr12 47947914 47947957 -95838498 + MLT1A2 LTR MaLR 269 313 -61 715 173 24 8 chr12 47947957 47948084 -95838371 + FLAM_C SINE Alu 2 130 -3 344 167 93 148 chr12 47948084 47948148 -95838307 + MLT1A2 LTR MaLR 313 370 -4 299 64 0 21 chr12 47951683 47951730 -95834725 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 360 0 0 0 chr12 47951729 47951769 -95834686 + (GA)n Simple_repeat Simple_repeat 1 40 0 201 158 0 0 chr12 47951945 47951983 -95834472 + (TA)n Simple_repeat Simple_repeat 1 38 0 1034 111 0 0 chr12 47953550 47953685 -95832770 + AluSq/x SINE Alu 1 135 -178 1967 155 0 0 chr12 47953685 47954003 -95832452 + AluSx SINE Alu 1 318 0 2134 99 4 0 chr12 47954007 47954279 -95832176 + AluSg SINE Alu 5 277 -33 25 31 0 0 chr12 47954279 47954311 -95832144 + AT_rich Low_complexity Low_complexity 1 32 0 234 353 67 8 chr12 47954473 47954592 -95831863 + L2 LINE L2 3143 3268 -4 30 69 0 0 chr12 47960216 47960274 -95826181 + AT_rich Low_complexity Low_complexity 1 58 0 216 129 29 14 chr12 47961474 47961544 -95824911 + (TA)n Simple_repeat Simple_repeat 2 72 0 520 215 25 0 chr12 47961618 47961739 -95824716 + MIR SINE MIR 122 245 -17 213 261 0 0 chr12 47961748 47961794 -95824661 + (TTA)n Simple_repeat Simple_repeat 2 47 0 215 132 26 0 chr12 47962713 47962751 -95823704 + (TG)n Simple_repeat Simple_repeat 2 40 0 2444 107 39 8 chr12 47963035 47963398 -95823057 - THE1C LTR MaLR -1 374 1 276 77 0 0 chr12 47963897 47963936 -95822519 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr12 47964965 47964994 -95821461 + AT_rich Low_complexity Low_complexity 1 29 0 2318 91 7 3 chr12 47965926 47966235 -95820220 - AluSx SINE Alu -2 310 1 1791 166 63 12 chr12 47966486 47966817 -95819638 + MER7A DNA MER2_type 1 346 0 421 262 176 41 chr12 47966923 47967144 -95819311 - MIR SINE MIR 0 262 12 241 188 21 0 chr12 47967653 47967701 -95818754 + CT-rich Low_complexity Low_complexity 1 49 0 2396 71 0 34 chr12 47967853 47968175 -95818280 - AluY SINE Alu 0 311 1 273 57 0 0 chr12 47968261 47968296 -95818159 + (CA)n Simple_repeat Simple_repeat 2 36 0 1216 194 92 49 chr12 47969382 47969666 -95816789 - AluJo SINE Alu -6 296 1 238 125 25 0 chr12 47969815 47969855 -95816600 + U2 snRNA snRNA 1 41 -147 291 321 36 18 chr12 47971430 47971542 -95814913 + L2 LINE L2 3191 3304 -9 1393 183 29 76 chr12 47971685 47972068 -95814387 + MLT1A1 LTR MaLR 1 365 0 2213 113 3 7 chr12 47975446 47975756 -95810699 - AluSx SINE Alu -3 309 1 252 356 119 10 chr12 47976225 47976427 -95810028 + L2 LINE L2 812 1035 -2279 658 331 53 39 chr12 47976812 47977150 -95809305 + L2 LINE L2 1062 1404 -1910 483 401 30 19 chr12 47977173 47977542 -95808913 + L2 LINE L2 1290 1662 -1652 324 0 0 0 chr12 47977545 47977581 -95808874 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 304 6 88 chr12 47977722 47977893 -95808562 - L2 LINE L2 -309 2963 2807 414 250 67 19 chr12 47978117 47978221 -95808234 - MIR SINE MIR -108 154 46 1061 342 49 24 chr12 47979048 47979595 -95806860 + MLT1K LTR MaLR 2 562 -26 327 327 26 9 chr12 47979618 47979731 -95806724 - MIR SINE MIR -100 162 48 435 251 2 23 chr12 47980355 47980469 -95805986 - MIR SINE MIR -100 108 1 2431 66 0 17 chr12 47981338 47981639 -95804816 + AluY SINE Alu 1 296 -15 2106 104 0 21 chr12 47981859 47982146 -95804309 + AluY SINE Alu 1 281 -30 324 0 0 0 chr12 47982149 47982185 -95804270 + (CAA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr12 47982620 47982643 -95803812 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 47983622 47983646 -95802809 + AT_rich Low_complexity Low_complexity 1 24 0 193 146 42 0 chr12 47983914 47983962 -95802493 + (TA)n Simple_repeat Simple_repeat 2 51 0 37 52 0 0 chr12 47984332 47984390 -95802065 + AT_rich Low_complexity Low_complexity 1 58 0 23 68 0 0 chr12 47984917 47984961 -95801494 + AT_rich Low_complexity Low_complexity 1 44 0 3453 151 30 7 chr12 47986290 47986892 -95799563 - L1MC1 LINE L1 -1 6332 5717 791 272 115 81 chr12 47986957 47987106 -95799349 + L1ME3A LINE L1 338 480 -5725 1712 211 20 28 chr12 47987106 47987505 -95798950 - MSTD LTR MaLR 0 396 1 791 272 115 81 chr12 47987505 47988179 -95798276 + L1ME3A LINE L1 480 1189 -5016 494 279 12 17 chr12 47988272 47988444 -95798011 + L1ME3A LINE L1 1551 1721 -4675 2326 75 9 6 chr12 47988444 47988765 -95797690 + L1PA10 LINE L1 5845 6166 -2 365 327 45 38 chr12 47989053 47989319 -95797136 + L1ME3A LINE L1 2059 2326 -4070 388 266 100 36 chr12 47989397 47989578 -95796877 + L1ME3A LINE L1 2299 2467 -3748 2355 99 0 0 chr12 47989578 47989882 -95796573 + AluSg SINE Alu 1 304 -6 388 266 100 36 chr12 47989882 47990139 -95796316 + L1ME3A LINE L1 2467 2765 -3450 789 256 135 0 chr12 47990178 47990408 -95796047 - MIR SINE MIR 0 262 2 787 291 89 25 chr12 47990411 47991263 -95795192 + L1ME3A LINE L1 4467 5373 -842 3502 148 72 44 chr12 47991370 47992203 -95794252 + LTR1 LTR ERV1 1 785 0 457 302 146 3 chr12 47992304 47992619 -95793836 + L1ME3A LINE L1 5564 5923 -316 225 178 0 0 chr12 47993806 47993851 -95792604 + (CA)n Simple_repeat Simple_repeat 1 45 0 260 0 0 54 chr12 47994824 47994861 -95791594 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 247 305 37 0 chr12 47996656 47996738 -95789717 + HAL1 LINE L1 445 529 -1978 183 129 0 0 chr12 47997526 47997557 -95788898 + (TA)n Simple_repeat Simple_repeat 1 31 0 345 314 195 6 chr12 47997563 47997732 -95788723 - MIR SINE MIR -30 232 32 889 310 99 65 chr12 47997847 47998535 -95787920 + L2 LINE L2 2247 2957 -357 651 251 60 6 chr12 47998543 47998710 -95787745 + MIR SINE MIR 22 197 -65 1793 176 9 3 chr12 47998710 47999051 -95787404 - L1 LINE L1 -1531 4615 4273 532 228 31 0 chr12 47999041 47999168 -95787287 + L1MA10 LINE L1 6202 6332 -2 * 475 305 183 11 chr12 47999239 47999524 -95786931 + L2 LINE L2 2970 3303 -10 353 241 103 0 chr12 47999839 47999955 -95786500 - MIR SINE MIR -30 232 105 254 261 125 11 chr12 48001333 48001421 -95785034 + MIR SINE MIR 34 131 -77 408 20 0 0 chr12 48002379 48002428 -95784027 + (TG)n Simple_repeat Simple_repeat 2 50 0 180 314 40 63 chr12 48002943 48003118 -95783337 - L2 LINE L2 -284 2988 2818 1248 184 18 0 chr12 48004102 48004320 -95782135 - AluJo SINE Alu -36 276 55 438 285 11 39 chr12 48004391 48004570 -95781885 + L1ME LINE L1 5521 5694 -427 23 78 0 0 chr12 48005005 48005056 -95781399 + AT_rich Low_complexity Low_complexity 1 51 0 297 256 149 50 chr12 48006218 48006339 -95780116 + MER94 DNA DNA 2 134 0 264 317 85 105 chr12 48006673 48007036 -95779419 - L2 LINE L2 0 3272 2917 185 387 92 7 chr12 48007955 48008097 -95778358 + L3 LINE CR1 1423 1576 -1 288 293 152 0 chr12 48008388 48008487 -95777968 - L2 LINE L2 0 3313 3200 1011 191 37 19 chr12 48009712 48009927 -95776528 + MLT1F1 LTR MaLR 348 566 -1 279 79 0 0 chr12 48009960 48009998 -95776457 + (CAA)n Simple_repeat Simple_repeat 2 39 0 642 325 20 14 chr12 48010112 48010407 -95776048 + MLT1F1-int LTR MaLR 291 587 -784 255 367 9 28 chr12 48012196 48012305 -95774150 + MIR SINE MIR 15 121 -141 226 297 0 16 chr12 48013065 48013129 -95773326 + L2 LINE L2 3249 3311 -2 25 51 0 0 chr12 48013423 48013462 -95772993 + AT_rich Low_complexity Low_complexity 1 39 0 2196 117 0 3 chr12 48013719 48014017 -95772438 + AluSq SINE Alu 1 297 -16 729 274 208 13 chr12 48017838 48018381 -95768074 + L2 LINE L2 2651 3313 0 696 288 50 32 chr12 48022297 48022516 -95763939 + MIR SINE MIR 15 237 -25 375 242 40 40 chr12 48022726 48022850 -95763605 + L2 LINE L2 3153 3276 -37 613 270 46 29 chr12 48022942 48023116 -95763339 - MER5B DNA MER1_type -1 177 1 531 202 0 0 chr12 48024738 48024832 -95761623 + MER5A DNA MER1_type 13 106 -83 2208 118 3 0 chr12 48026386 48026692 -95759763 - AluSg SINE Alu -3 307 1 186 208 0 57 chr12 48030644 48030697 -95755758 - MIR SINE MIR -205 57 8 205 236 28 28 chr12 48031240 48031312 -95755143 + CT-rich Low_complexity Low_complexity 4 75 0 422 316 58 10 chr12 48031707 48031913 -95754542 + LTR33 LTR ERVL 298 513 -8 824 157 15 71 chr12 48032130 48032152 -95754303 - L1MC4 LINE L1 -496 7546 7524 1565 216 47 18 chr12 48032152 48032537 -95753918 + MSTD LTR MaLR 1 396 0 824 157 15 71 chr12 48032537 48032711 -95753744 - L1MC4 LINE L1 -518 7524 7361 278 179 9 104 chr12 48032722 48032828 -95753627 + L1MC4 LINE L1 7914 8009 -33 244 286 52 0 chr12 48034001 48034078 -95752377 + L2 LINE L2 3229 3309 -4 459 272 68 6 chr12 48034324 48034486 -95751969 + MIR SINE MIR 20 191 -71 192 77 0 0 chr12 48034535 48034561 -95751894 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 338 300 36 7 chr12 48034637 48034777 -95751678 - MIR SINE MIR 0 262 119 217 319 166 19 chr12 48035180 48035337 -95751118 - L2 LINE L2 -576 2738 2559 204 97 0 0 chr12 48035711 48035742 -95750713 + (CA)n Simple_repeat Simple_repeat 1 31 0 235 255 262 21 chr12 48036396 48036541 -95749914 - MIR SINE MIR 0 262 83 21 57 0 0 chr12 48036577 48036612 -95749843 + AT_rich Low_complexity Low_complexity 1 35 0 2024 146 0 0 chr12 48039311 48039620 -95746835 - AluY SINE Alu -2 309 1 249 158 0 0 chr12 48040080 48040118 -95746337 + Alu SINE Alu 114 151 -15 24 53 0 0 chr12 48040255 48040293 -95746162 + AT_rich Low_complexity Low_complexity 1 38 0 194 379 24 40 chr12 48040490 48040614 -95745841 + MIR3 SINE MIR 4 125 -83 224 243 128 53 chr12 48040747 48040860 -95745595 - MIR SINE MIR -111 151 33 1038 190 4 66 chr12 48041465 48041657 -95744798 - MER20 DNA MER1_type -2 217 39 1422 128 0 53 chr12 48041657 48041900 -95744555 + MER30 DNA MER1_type 1 230 0 1038 190 4 66 chr12 48041900 48041933 -95744522 - MER20 DNA MER1_type -180 39 6 920 294 83 30 chr12 48043600 48044116 -95742339 - L2 LINE L2 -12 3301 2762 219 333 144 35 chr12 48044325 48044526 -95741929 - MIR SINE MIR -6 256 34 282 344 11 0 chr12 48044651 48044744 -95741711 - L3 LINE CR1 -50 1527 1434 342 153 0 0 chr12 48045291 48045350 -95741105 + GA-rich Low_complexity Low_complexity 2 60 0 198 327 20 59 chr12 48046088 48046189 -95740266 - MIR SINE MIR -76 132 36 383 286 85 35 chr12 48046243 48046442 -95740013 - MIR SINE MIR -2 260 52 38 89 0 0 chr12 48047823 48047924 -95738531 + AT_rich Low_complexity Low_complexity 1 101 0 485 331 79 6 chr12 48048149 48048376 -95738079 + MIR SINE MIR 16 256 -6 410 296 56 0 chr12 48048622 48048730 -95737725 + MLT1L LTR MaLR 299 412 -203 192 411 53 20 chr12 48048964 48049115 -95737340 - L2 LINE L2 -10 3262 3107 414 275 42 8 chr12 48051325 48051445 -95735010 - L3b LINE CR1 -235 1348 1225 180 53 79 0 chr12 48052072 48052110 -95734345 + (TG)n Simple_repeat Simple_repeat 1 41 0 2318 112 0 0 chr12 48052449 48052754 -95733701 + AluSx SINE Alu 1 305 -7 310 243 14 14 chr12 48055659 48055729 -95730726 - L2 LINE L2 -2 3311 3242 700 315 21 8 chr12 48056277 48056515 -95729940 + MIR SINE MIR 7 247 -15 340 250 250 7 chr12 48056537 48056681 -95729774 + MIR SINE MIR 84 262 0 321 200 0 14 chr12 48057694 48057764 -95728691 + MER116 DNA Mariner 3 71 -9 508 330 28 28 chr12 48058023 48058241 -95728214 + MIR SINE MIR 12 229 -33 310 158 66 0 chr12 48058320 48058396 -95728059 + L1MA7 LINE L1 6210 6290 -1 2254 80 7 10 chr12 48058609 48058908 -95727547 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr12 48059174 48059204 -95727251 + AT_rich Low_complexity Low_complexity 1 30 0 54 40 0 0 chr12 48059327 48059402 -95727053 + AT_rich Low_complexity Low_complexity 1 75 0 364 268 58 20 chr12 48060054 48060177 -95726278 + MLT1I LTR MaLR 47 173 -236 1837 31 0 0 chr12 48060181 48060403 -95726052 + L1PA4 LINE L1 5926 6147 -8 239 236 111 0 chr12 48060424 48060496 -95725959 + MLT1J2 LTR MaLR 253 332 -118 191 95 32 32 chr12 48060500 48060563 -95725892 + A-rich Low_complexity Low_complexity 3 65 0 2517 59 3 0 chr12 48060952 48061259 -95725196 - AluY SINE Alu -2 309 2 1226 125 0 0 chr12 48061885 48062053 -95724402 - AluSg/x SINE Alu -14 298 131 270 301 74 44 chr12 48062717 48062946 -95723509 + L2 LINE L2 3075 3310 -3 248 102 20 0 chr12 48064111 48064160 -95722295 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 2242 123 0 0 chr12 48065814 48066115 -95720340 + AluSq SINE Alu 4 304 -9 21 36 0 0 chr12 48067278 48067306 -95719149 + AT_rich Low_complexity Low_complexity 1 28 0 201 304 43 14 chr12 48067743 48067812 -95718643 - L2 LINE L2 -559 2755 2685 225 191 21 21 chr12 48068871 48068918 -95717537 - L2 LINE L2 -20 3293 3247 1786 107 76 17 chr12 48069337 48069627 -95716828 + L1PA13 LINE L1 5857 6163 0 219 319 92 34 chr12 48071821 48072113 -95714342 + L2 LINE L2 2346 2654 -660 2113 124 3 0 chr12 48072377 48072660 -95713795 + AluSq SINE Alu 1 284 -29 229 256 0 70 chr12 48072932 48073018 -95713437 + L2 LINE L2 3185 3264 -8 192 77 0 0 chr12 48074192 48074218 -95712237 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 203 305 17 0 chr12 48074221 48074280 -95712175 - L2 LINE L2 -10 3262 3203 32 26 0 0 chr12 48075265 48075304 -95711151 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr12 48075550 48075582 -95710873 + AT_rich Low_complexity Low_complexity 1 32 0 954 223 19 5 chr12 48076083 48076289 -95710166 - MER3 DNA MER1_type 0 209 1 752 301 28 20 chr12 48078016 48078265 -95708190 + LTR16A LTR ERVL 200 450 0 32 0 0 0 chr12 48078422 48078454 -95708001 + AT_rich Low_complexity Low_complexity 1 32 0 2196 94 0 33 chr12 48078658 48078965 -95707490 - AluY SINE Alu -2 309 13 561 178 0 35 chr12 48080005 48080179 -95706276 + (TA)n Simple_repeat Simple_repeat 1 168 0 304 221 0 87 chr12 48080193 48080297 -95706158 + L1MC4 LINE L1 6614 6708 -1334 200 326 67 34 chr12 48080405 48080494 -95705961 + L2 LINE L2 3158 3249 -23 1412 195 85 3 chr12 48081521 48081839 -95704616 + MER2 DNA MER2_type 1 344 0 5360 170 58 3 chr12 48081938 48083659 -95702796 + L1PA16 LINE L1 4333 6149 -17 1819 86 135 0 chr12 48084200 48084467 -95701988 + AluSp SINE Alu 1 303 0 501 167 9 0 chr12 48086347 48086461 -95699994 + CT-rich Low_complexity Low_complexity 1 115 0 224 329 40 54 chr12 48086857 48087006 -95699449 - L2 LINE L2 -1 3271 3125 1404 212 140 14 chr12 48087277 48087692 -95698763 - MLT1C LTR MaLR 0 467 1 205 189 0 0 chr12 48087910 48087947 -95698508 + (CATA)n Simple_repeat Simple_repeat 2 38 0 234 189 198 3 chr12 48088259 48088340 -95698115 + MIR SINE MIR 56 152 -56 1579 200 0 23 chr12 48088469 48088636 -95697819 - AluJb SINE Alu -19 293 135 180 0 0 0 chr12 48088636 48088656 -95697799 + (TA)n Simple_repeat Simple_repeat 2 21 0 1579 200 0 23 chr12 48088656 48088788 -95697667 - AluJb SINE Alu -177 135 1 265 364 37 25 chr12 48089495 48089657 -95696798 + MIR3 SINE MIR 6 169 -39 592 235 113 113 chr12 48089821 48090132 -95696323 - MLT1J LTR MaLR -200 311 1 556 239 39 17 chr12 48090142 48090322 -95696133 + HAL1 LINE L1 2001 2184 -323 2224 124 0 0 chr12 48090395 48090693 -95695762 + AluSx SINE Alu 1 298 -14 3172 138 11 27 chr12 48090702 48091262 -95695193 + L1MA5A LINE L1 5741 6291 -6 5410 127 6 11 chr12 48091280 48092136 -95694319 - L1PA15-16 LINE L1 -3876 2973 2122 22 0 0 0 chr12 48092218 48092240 -95694215 + AT_rich Low_complexity Low_complexity 1 22 0 318 381 84 44 chr12 48092451 48092902 -95693553 - L2 LINE L2 -341 2973 2505 284 133 78 11 chr12 48092902 48092992 -95693463 + (TA)n Simple_repeat Simple_repeat 2 97 0 2148 93 0 39 chr12 48093950 48094260 -95692195 + AluSq SINE Alu 1 298 -15 271 395 88 29 chr12 48095064 48095302 -95691153 - L2 LINE L2 0 3272 3021 2008 137 34 0 chr12 48098785 48099078 -95687377 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 48099551 48099573 -95686882 + AT_rich Low_complexity Low_complexity 1 22 0 1858 135 50 33 chr12 48100011 48100373 -95686082 - THE1C LTR MaLR -7 368 1 2654 81 0 0 chr12 48100733 48101081 -95685374 - L1PA7 LINE L1 -4 6150 5803 246 347 132 7 chr12 48101442 48101586 -95684869 - MIR SINE MIR -75 187 26 325 323 169 33 chr12 48102207 48102575 -95683880 - MLT1J2 LTR MaLR -1 449 32 21 0 0 0 chr12 48102714 48102735 -95683720 + AT_rich Low_complexity Low_complexity 1 21 0 284 351 26 13 chr12 48104077 48104228 -95682227 + MIR SINE MIR 3 155 -107 272 312 14 65 chr12 48104418 48104580 -95681875 + MER5A DNA MER1_type 17 170 -8 431 204 154 43 chr12 48104915 48105077 -95681378 - MIR SINE MIR -1 261 82 2023 138 7 0 chr12 48105403 48105700 -95680755 + AluSx SINE Alu 13 311 -1 212 335 77 32 chr12 48105856 48106011 -95680444 + L2 LINE L2 3084 3245 -68 217 261 0 0 chr12 48106188 48106234 -95680221 + (TATG)n Simple_repeat Simple_repeat 1 46 0 497 320 96 25 chr12 48106390 48106756 -95679699 - L2 LINE L2 -704 2610 2219 272 250 0 0 chr12 48107195 48107247 -95679208 + MIR SINE MIR 40 91 -171 2399 92 0 3 chr12 48107771 48108076 -95678379 + AluSc SINE Alu 1 304 -5 2193 133 75 2 chr12 48108335 48108734 -95677721 - MSTA LTR MaLR 0 428 1 517 279 57 88 chr12 48108790 48109052 -95677403 - MIR SINE MIR -2 260 7 202 372 12 12 chr12 48109151 48109237 -95677218 - MIR SINE MIR -104 104 19 189 321 0 0 chr12 48109657 48109710 -95676745 + L2 LINE L2 3261 3313 0 201 391 30 15 chr12 48110079 48110212 -95676243 - L2 LINE L2 0 3313 3179 443 266 32 0 chr12 48110496 48110590 -95675865 + MER81 DNA DNA 18 114 0 205 220 40 0 chr12 48110945 48110995 -95675460 + MIR SINE MIR 87 138 -70 1006 240 88 47 chr12 48111698 48112186 -95674269 - L1MC5 LINE L1 -436 7525 7018 2058 116 0 3 chr12 48113083 48113393 -95673062 + AluSg SINE Alu 1 309 0 258 192 27 55 chr12 48119089 48119162 -95667293 - MIR SINE MIR -37 225 155 921 227 163 57 chr12 48121734 48122121 -95664334 + LTR16A LTR ERVL 18 445 -5 34 24 0 0 chr12 48122509 48122550 -95663905 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr12 48122593 48122625 -95663830 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr12 48123826 48123849 -95662606 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 218 257 235 7 chr12 48125058 48125194 -95661261 + MIR SINE MIR 95 261 -1 568 253 74 25 chr12 48125204 48125366 -95661089 - MIR SINE MIR -71 191 22 193 294 0 0 chr12 48125430 48125481 -95660974 + L2 LINE L2 3263 3313 0 193 353 29 73 chr12 48125855 48126059 -95660396 + L2 LINE L2 2916 3110 -162 260 281 0 34 chr12 48126394 48126483 -95659972 - HsTC2 DNA Tc2 -1807 91 6 216 363 39 49 chr12 48127060 48127162 -95659293 - L2 LINE L2 -63 3209 3109 25 31 0 0 chr12 48127253 48127285 -95659170 + AT_rich Low_complexity Low_complexity 1 32 0 1620 182 7 26 chr12 48128222 48128524 -95657931 + AluJb SINE Alu 3 298 -14 184 98 24 24 chr12 48128528 48128569 -95657886 + (TA)n Simple_repeat Simple_repeat 1 41 0 704 240 31 110 chr12 48129147 48129501 -95656954 + MLT1F1-int LTR MaLR 1046 1371 0 1809 195 65 111 chr12 48129515 48130083 -95656372 + MLT1F1 LTR MaLR 26 567 0 1086 241 24 130 chr12 48130166 48130195 -95656260 + MLT1H1 LTR MaLR 186 216 -339 1267 249 25 17 chr12 48130195 48130557 -95655898 + MLT1A1 LTR MaLR 1 365 0 1086 241 24 130 chr12 48130557 48130941 -95655514 + MLT1H1 LTR MaLR 216 555 0 217 274 20 0 chr12 48131512 48131563 -95654892 + L2 LINE L2 3219 3270 -2 284 307 19 26 chr12 48132009 48132291 -95654164 - MER112 DNA MER1_type 0 260 1 24 0 0 0 chr12 48135222 48135246 -95651209 + AT_rich Low_complexity Low_complexity 1 24 0 1184 277 108 13 chr12 48135723 48136120 -95650335 + L2 LINE L2 2405 2839 -475 5449 78 14 33 chr12 48136124 48136937 -95649518 - L1PA13 LINE L1 0 6163 5336 1670 158 0 28 chr12 48136937 48137222 -95649233 - AluSx SINE Alu -35 277 1 5449 78 14 33 chr12 48137222 48138146 -95648309 - L1PA13 LINE L1 -827 5336 4397 5178 181 11 0 chr12 48138150 48139085 -95647370 - L1P LINE L1 -1947 4199 3255 573 323 151 39 chr12 48139086 48139517 -95646938 + L2 LINE L2 2835 3313 0 262 287 127 84 chr12 48139602 48139839 -95646616 - MIR SINE MIR -12 250 4 228 154 0 26 chr12 48140351 48140390 -95646065 + Alu SINE Alu 252 289 -13 977 42 0 0 chr12 48140412 48140530 -95645925 + AluSg/x SINE Alu 190 307 -3 11743 232 41 38 chr12 48142350 48145677 -95640778 + L1MA9 LINE L1 853 4166 -2350 2243 119 0 0 chr12 48145677 48145979 -95640476 + AluSq SINE Alu 1 302 -11 11743 232 41 38 chr12 48145979 48146824 -95639631 + L1MA9 LINE L1 4166 5006 -1510 1893 98 4 4 chr12 48146824 48147079 -95639376 - AluY SINE Alu -18 293 39 11743 232 41 38 chr12 48147079 48148732 -95637723 + L1MA9 LINE L1 5006 6379 -137 183 100 0 0 chr12 48148732 48148762 -95637693 + (CA)n Simple_repeat Simple_repeat 1 30 0 11743 232 41 38 chr12 48148762 48148900 -95637555 + L1MA9 LINE L1 6379 6515 -1 571 252 50 0 chr12 48148929 48149068 -95637387 + MIR SINE MIR 104 249 -13 966 271 61 32 chr12 48149189 48149513 -95636942 - MLT1F1 LTR MaLR 0 567 189 213 39 0 0 chr12 48149513 48149539 -95636916 + (GA)n Simple_repeat Simple_repeat 2 27 0 966 271 61 32 chr12 48149539 48149734 -95636721 - MLT1F1 LTR MaLR -378 189 1 205 239 22 0 chr12 48149743 48149789 -95636666 + L2 LINE L2 2231 2277 -1037 565 245 96 55 chr12 48150192 48150520 -95635935 + LTR35 LTR ERV1 349 672 -7 7189 100 10 25 chr12 48150520 48151607 -95634848 + MER11C LTR ERVK 1 1071 0 224 338 155 30 chr12 48151933 48152229 -95634226 + L2 LINE L2 2981 3313 0 198 260 269 10 chr12 48152431 48152535 -95633920 - L2 LINE L2 -10 3262 3132 263 240 54 47 chr12 48152678 48152807 -95633648 + L1MEd LINE L1 10 139 -5980 225 398 48 6 chr12 48152975 48153141 -95633314 + L1MEd LINE L1 281 453 -5666 21 82 0 0 chr12 48153330 48153379 -95633076 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr12 48153619 48153648 -95632807 + AT_rich Low_complexity Low_complexity 1 29 0 369 300 86 22 chr12 48153668 48153935 -95632520 + L1MEd LINE L1 971 1254 -4865 235 296 98 15 chr12 48153941 48154144 -95632311 + L1MEd LINE L1 1301 1520 -4790 503 325 55 55 chr12 48154922 48155341 -95631114 + L1MEd LINE L1 2160 2578 -3551 25 0 0 0 chr12 48156771 48156796 -95629659 + AT_rich Low_complexity Low_complexity 1 25 0 2152 130 3 16 chr12 48157036 48157352 -95629103 - AluSx SINE Alu 0 312 1 25 0 0 0 chr12 48162185 48162210 -95624245 + AT_rich Low_complexity Low_complexity 1 25 0 259 232 14 29 chr12 48163534 48163603 -95622852 + (TATG)n Simple_repeat Simple_repeat 4 71 0 342 0 0 0 chr12 48163613 48163651 -95622804 + (CA)n Simple_repeat Simple_repeat 2 39 0 357 295 118 18 chr12 48164026 48164182 -95622273 + MER5B DNA MER1_type 1 168 -21 2162 105 42 33 chr12 48164772 48165133 -95621322 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr12 48165621 48165653 -95620802 + AT_rich Low_complexity Low_complexity 1 32 0 341 268 117 40 chr12 48165963 48166106 -95620349 + MIR SINE MIR 5 160 -48 328 302 43 35 chr12 48167028 48167144 -95619311 + L2 LINE L2 3155 3271 -1 294 297 83 7 chr12 48167196 48167341 -95619114 + MIR SINE MIR 100 255 -7 291 146 0 0 chr12 48167402 48167457 -95618998 + (GA)n Simple_repeat Simple_repeat 1 55 0 189 353 38 9 chr12 48169466 48169576 -95616879 - MIR SINE MIR -56 152 39 196 413 48 11 chr12 48170539 48170728 -95615727 + L2 LINE L2 2625 2820 -494 364 322 104 28 chr12 48170743 48170954 -95615501 - LTR67 LTR ERVL -7 550 324 202 200 0 0 chr12 48171290 48171330 -95615125 + (TGAG)n Simple_repeat Simple_repeat 3 42 0 332 329 175 15 chr12 48172191 48172534 -95613921 + L2 LINE L2 1626 2023 -1291 637 209 0 9 chr12 48172583 48172726 -95613729 - FLAM_A SINE Alu 0 143 2 2074 133 146 8 chr12 48172824 48173200 -95613255 + MSTA LTR MaLR 1 428 0 184 299 102 54 chr12 48173402 48173549 -95612906 + L2 LINE L2 2211 2364 -950 343 304 39 0 chr12 48174387 48174489 -95611966 + L2 LINE L2 3208 3313 0 232 385 0 12 chr12 48174906 48174989 -95611466 + MIR SINE MIR 21 102 -160 2647 186 30 35 chr12 48174996 48175539 -95610916 + MLT1F1 LTR MaLR 1 540 -27 873 208 49 6 chr12 48175612 48175795 -95610660 - MER3 DNA MER1_type -2 207 17 669 169 93 41 chr12 48175796 48175968 -95610487 - FRAM SINE Alu 0 176 1 22 0 0 0 chr12 48176526 48176548 -95609907 + AT_rich Low_complexity Low_complexity 1 22 0 507 236 69 37 chr12 48176840 48177086 -95609369 - Charlie1a DNA MER1_type 0 1455 1202 738 247 0 0 chr12 48177094 48177256 -95609199 - Charlie1a DNA MER1_type -368 1087 926 2379 181 33 61 chr12 48177264 48177807 -95608648 - Charlie1a DNA MER1_type -927 528 1 3998 198 31 7 chr12 48178275 48179367 -95607088 + L1MB8 LINE L1 5009 6127 -51 21 0 0 0 chr12 48179460 48179481 -95606974 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 48179551 48179574 -95606881 + AT_rich Low_complexity Low_complexity 1 23 0 2455 71 0 0 chr12 48179574 48179883 -95606572 - AluY SINE Alu -2 309 1 234 288 55 0 chr12 48179940 48180013 -95606442 + MIR SINE MIR 70 146 -116 206 22 22 65 chr12 48181280 48181326 -95605129 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr12 48181334 48181362 -95605093 + AT_rich Low_complexity Low_complexity 1 28 0 1783 172 16 11 chr12 48182179 48182545 -95603910 - L1MA6 LINE L1 -2 6298 5931 399 114 14 0 chr12 48182545 48182612 -95603843 - L1PB2 LINE L1 -7 6144 6074 1269 222 13 0 chr12 48182612 48182927 -95603528 + L1 LINE L1 3143 3461 -2685 * 8972 167 22 25 chr12 48182926 48185325 -95601130 - L1MA6 LINE L1 -393 5907 3507 6358 162 11 9 chr12 48185336 48187217 -95599238 - L1MA3 LINE L1 -13 6292 4408 1504 181 22 27 chr12 48187216 48187619 -95598836 - L1MA6 LINE L1 -2621 3525 3125 * 750 211 0 0 chr12 48188006 48188139 -95598316 + FLAM_A SINE Alu 1 133 0 3477 139 22 74 chr12 48188798 48189525 -95596930 + LTR8 LTR ERV1 1 689 -2 980 48 0 0 chr12 48190674 48190798 -95595657 + L1PA5 LINE L1 6030 6153 -1 180 111 0 0 chr12 48191647 48191674 -95594781 + (T)n Simple_repeat Simple_repeat 1 27 0 656 299 35 35 chr12 48192954 48193208 -95593247 + MIR SINE MIR 9 262 0 626 351 128 17 chr12 48193268 48194052 -95592403 + L2 LINE L2 467 1337 -1977 1569 138 240 10 chr12 48194138 48194442 -95592013 + THE1C LTR MaLR 2 375 0 253 266 62 62 chr12 48195421 48195534 -95590921 - MIR SINE MIR 0 262 150 402 188 0 103 chr12 48195620 48195737 -95590718 - MIR SINE MIR -110 152 48 824 202 54 39 chr12 48197536 48197739 -95588716 - AluJo SINE Alu -21 291 86 23 0 0 0 chr12 48198100 48198123 -95588332 + AT_rich Low_complexity Low_complexity 1 23 0 276 130 0 0 chr12 48198224 48198270 -95588185 + (CA)n Simple_repeat Simple_repeat 2 47 0 1724 188 30 7 chr12 48199786 48200090 -95586365 + AluJb SINE Alu 1 311 -1 830 187 137 70 chr12 48201067 48201366 -95585089 - MER33 DNA MER1_type -4 320 2 231 111 0 0 chr12 48201380 48201416 -95585039 - MADE1 DNA Mariner -44 36 1 22 0 0 0 chr12 48202205 48202227 -95584228 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr12 48202304 48202354 -95584101 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr12 48202433 48202464 -95583991 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 48202731 48202753 -95583702 + AT_rich Low_complexity Low_complexity 1 22 0 210 191 0 0 chr12 48203155 48203202 -95583253 + A-rich Low_complexity Low_complexity 3 49 0 2430 70 0 19 chr12 48203269 48203585 -95582870 + AluY SINE Alu 2 311 0 1752 153 30 0 chr12 48203738 48204033 -95582422 + AluSx SINE Alu 1 304 -8 379 250 30 15 chr12 48205078 48205210 -95581245 - L1ME4a LINE L1 -11 6110 5977 220 349 85 0 chr12 48207196 48207302 -95579153 - MIR3 SINE MIR -80 128 14 383 142 133 62 chr12 48207560 48207673 -95578782 + L1ME4a LINE L1 5986 6106 -15 1988 166 25 6 chr12 48208502 48208858 -95577597 + MLT2D LTR ERVL 4 366 -48 257 50 0 25 chr12 48208975 48209015 -95577440 + (TA)n Simple_repeat Simple_repeat 2 40 0 351 0 0 0 chr12 48209568 48209607 -95576848 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr12 48210566 48210587 -95575868 + AT_rich Low_complexity Low_complexity 1 21 0 273 370 115 42 chr12 48211380 48211737 -95574718 + L2 LINE L2 2872 3254 -18 2496 113 17 11 chr12 48213237 48213599 -95572856 + THE1B LTR MaLR 1 364 0 276 256 163 12 chr12 48214543 48214629 -95571826 + MER5B DNA MER1_type 1 99 -90 216 67 0 0 chr12 48215781 48215811 -95570644 + (CA)n Simple_repeat Simple_repeat 1 30 0 2125 151 0 0 chr12 48215831 48216135 -95570320 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr12 48216272 48216295 -95570160 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 48216362 48216382 -95570073 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1767 167 70 30 chr12 48216484 48216855 -95569600 + MSTD LTR MaLR 10 395 -1 1177 168 20 133 chr12 48218508 48218900 -95567555 + MLT1A1 LTR MaLR 18 365 0 3927 223 61 91 chr12 48218904 48220306 -95566149 + MLT1A2-int LTR MaLR 5 1364 -7 1262 217 110 36 chr12 48220312 48220648 -95565807 + MLT1A2 LTR MaLR 1 361 -13 258 250 18 0 chr12 48220661 48220717 -95565738 - MIR SINE MIR -3 259 203 199 268 134 21 chr12 48221163 48221260 -95565195 - L2 LINE L2 -1826 1488 1381 718 250 16 49 chr12 48221424 48221668 -95564787 + MER106A DNA MER1_type 1 236 0 363 60 0 0 chr12 48223078 48223128 -95563327 + (TG)n Simple_repeat Simple_repeat 2 51 0 26 0 0 0 chr12 48223766 48223792 -95562663 + AT_rich Low_complexity Low_complexity 1 26 0 244 228 76 0 chr12 48223883 48223962 -95562493 - L1MC4 LINE L1 -1344 6698 6614 202 194 0 0 chr12 48223965 48224001 -95562454 + (CA)n Simple_repeat Simple_repeat 1 36 0 241 379 8 32 chr12 48224154 48224278 -95562177 - MIR SINE MIR -122 140 20 28 0 0 0 chr12 48226392 48226420 -95560035 + AT_rich Low_complexity Low_complexity 1 28 0 7941 139 5 21 chr12 48228857 48229083 -95557372 - HSMAR2 DNA Mariner 0 1302 1074 2043 142 7 0 chr12 48229083 48229386 -95557069 - AluJb SINE Alu -7 305 1 7941 139 5 21 chr12 48229386 48230481 -95555974 - HSMAR2 DNA Mariner -228 1074 2 827 272 57 17 chr12 48230781 48231249 -95555206 - HAL1 LINE L1 -737 1770 1190 27 49 0 0 chr12 48231492 48231533 -95554922 + AT_rich Low_complexity Low_complexity 1 41 0 296 205 150 50 chr12 48231758 48231884 -95554571 - MIR SINE MIR -66 142 2 251 272 26 131 chr12 48232849 48233162 -95553293 + MLT1J2 LTR MaLR 78 357 -93 218 348 62 0 chr12 48234576 48234688 -95551767 - MIR SINE MIR -110 152 34 25 31 0 0 chr12 48234885 48234917 -95551538 + AT_rich Low_complexity Low_complexity 1 32 0 344 264 82 93 chr12 48238704 48238886 -95547569 - MIR3 SINE MIR -13 195 16 240 170 0 0 chr12 48239690 48239743 -95546712 + A-rich Low_complexity Low_complexity 1 53 0 16049 99 10 3 chr12 48240049 48244245 -95542210 - L1PA7 LINE L1 0 6469 2251 12812 98 4 5 chr12 48244258 48246146 -95540309 - L1PA7 LINE L1 -4570 1891 8 203 318 102 11 chr12 48246800 48246888 -95539567 - MIR3 SINE MIR -24 184 89 685 167 54 6 chr12 48248999 48249163 -95537292 - L1MD3 LINE L1 -1 7994 7612 210 348 68 25 chr12 48249267 48249385 -95537070 - MIR SINE MIR -34 228 106 199 200 25 0 chr12 48249386 48249426 -95537029 + MIR SINE MIR 61 101 -161 217 184 0 58 chr12 48249518 48249605 -95536850 + (TA)n Simple_repeat Simple_repeat 2 83 0 830 186 23 40 chr12 48249798 48249975 -95536480 - MER106A DNA MER1_type -58 178 5 556 297 95 9 chr12 48250675 48250907 -95535548 - L2 LINE L2 -106 3207 2956 366 281 129 57 chr12 48250894 48251211 -95535244 - L3 LINE CR1 -835 742 403 * 251 340 196 21 chr12 48251253 48251447 -95535008 + L3 LINE CR1 1243 1470 -107 22 56 0 0 chr12 48251716 48251752 -95534703 + AT_rich Low_complexity Low_complexity 1 36 0 604 35 23 0 chr12 48255718 48255805 -95530650 + (CA)n Simple_repeat Simple_repeat 2 90 0 195 253 81 30 chr12 48255865 48255964 -95530491 - MIR SINE MIR -57 205 102 260 285 139 29 chr12 48257782 48257919 -95528536 + MIR SINE MIR 79 230 -32 182 207 0 171 chr12 48257954 48258036 -95528419 + L2 LINE L2 3238 3305 -8 1941 132 9 38 chr12 48258199 48258518 -95527937 - AluSq SINE Alu -3 310 1 211 200 0 50 chr12 48258607 48258667 -95527788 + T-rich Low_complexity Low_complexity 4 60 0 437 250 200 0 chr12 48258675 48258835 -95527620 + MER117 DNA MER1_type 2 193 -4 2840 3 0 0 chr12 48259730 48260036 -95526419 - AluYa5 SINE Alu -5 306 1 336 208 104 0 chr12 48260215 48260321 -95526134 - MER113 DNA MER1_type? -295 226 110 27 81 0 0 chr12 48260648 48260710 -95525745 + AT_rich Low_complexity Low_complexity 1 62 0 1885 139 51 12 chr12 48260955 48261286 -95525169 - L1PA16 LINE L1 -4 6162 5819 2046 138 0 0 chr12 48262364 48262655 -95523800 - AluSx SINE Alu -15 297 7 1124 86 0 0 chr12 48262656 48262795 -95523660 - AluSq/x SINE Alu -173 139 1 21 36 0 0 chr12 48263084 48263112 -95523343 + AT_rich Low_complexity Low_complexity 1 28 0 2419 77 0 0 chr12 48264282 48264593 -95521862 + AluY SINE Alu 1 311 0 21 0 0 0 chr12 48265459 48265480 -95520975 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 48265538 48265561 -95520894 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr12 48266369 48266402 -95520053 + AT_rich Low_complexity Low_complexity 1 33 0 770 266 54 14 chr12 48267216 48267438 -95519017 + L2 LINE L2 3083 3313 0 241 250 17 0 chr12 48267675 48267735 -95518720 + CT-rich Low_complexity Low_complexity 2 62 0 422 284 159 0 chr12 48267990 48268166 -95518289 + MIR SINE MIR 49 252 -10 245 315 99 33 chr12 48268379 48268592 -95517863 + L2 LINE L2 2010 2236 -1078 1193 184 19 60 chr12 48268611 48268869 -95517586 + MLT1A1 LTR MaLR 40 388 -69 419 304 79 75 chr12 48268879 48269375 -95517080 - L2 LINE L2 -546 2768 2271 430 176 41 29 chr12 48269403 48269504 -95516951 - MLT1A1 LTR MaLR 0 447 276 2516 158 14 7 chr12 48270035 48270453 -95516002 + MSTB LTR MaLR 2 422 -4 307 0 47 0 chr12 48270620 48270663 -95515792 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 226 48 0 48 chr12 48270979 48271021 -95515434 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 1089 181 105 34 chr12 48271023 48271261 -95515194 - AluJo SINE Alu -57 255 1 213 366 42 0 chr12 48271427 48271498 -95514957 + L2 LINE L2 3238 3311 -2 366 293 177 7 chr12 48271662 48271809 -95514646 + MIR SINE MIR 53 224 -38 275 203 40 0 chr12 48271932 48272000 -95514455 - L1MB2 LINE L1 -10 6161 6090 330 67 0 0 chr12 48272000 48272045 -95514410 + (CA)n Simple_repeat Simple_repeat 2 46 0 3348 155 17 3 chr12 48272059 48272646 -95513809 - L1MA4 LINE L1 -280 6020 5426 1590 189 6 6 chr12 48272645 48272968 -95513487 + L1 LINE L1 4897 5219 -927 * 1322 208 200 31 chr12 48273107 48273320 -95513135 - L1ME1 LINE L1 -5 6161 5985 1964 130 21 0 chr12 48273320 48273605 -95512850 - AluSg SINE Alu -19 291 1 1322 208 200 31 chr12 48273605 48273901 -95512554 - L1ME1 LINE L1 -181 5985 5566 1592 203 0 0 chr12 48273933 48274237 -95512218 - AluJo SINE Alu 0 304 1 7731 136 26 14 chr12 48274392 48275677 -95510778 + HSMAR2 DNA Mariner 1 1301 -1 351 130 52 39 chr12 48276799 48276876 -95509579 - MADE1 DNA Mariner 0 80 3 212 250 0 36 chr12 48276931 48276987 -95509468 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 34 42 0 0 chr12 48277277 48277325 -95509130 + AT_rich Low_complexity Low_complexity 1 48 0 219 314 105 24 chr12 48278640 48278764 -95507691 + MER5A DNA MER1_type 28 161 -28 * 486 256 70 8 chr12 48278660 48278789 -95507666 - MER5A DNA MER1_type -43 146 10 190 331 86 22 chr12 48278914 48279053 -95507402 + L2 LINE L2 3165 3312 -1 358 259 91 0 chr12 48280428 48280571 -95505884 - L1MC5 LINE L1 -86 7875 7720 205 333 122 0 chr12 48280646 48280736 -95505719 + L2 LINE L2 3203 3303 -10 1615 285 136 17 chr12 48280755 48281081 -95505374 - L2 LINE L2 0 3313 3027 2831 12 0 19 chr12 48281081 48281403 -95505052 + AluYb8 SINE Alu 1 316 -2 1615 285 136 17 chr12 48281403 48282174 -95504281 - L2 LINE L2 -286 3027 2090 43 20 0 0 chr12 48282409 48282459 -95503996 + AT_rich Low_complexity Low_complexity 1 50 0 251 162 0 0 chr12 48283363 48283400 -95503055 + AluJb SINE Alu 79 115 -187 225 0 0 0 chr12 48283417 48283442 -95503013 + (TG)n Simple_repeat Simple_repeat 2 26 0 963 261 76 36 chr12 48283892 48284222 -95502233 - MLT2F LTR ERVL -303 360 18 672 326 23 9 chr12 48284406 48284621 -95501834 - MIR SINE MIR -25 237 20 847 223 112 14 chr12 48284786 48285001 -95501454 + MER46A DNA MER2_type 1 236 0 2191 135 16 28 chr12 48285142 48285505 -95500950 + MLT1A1 LTR MaLR 2 360 -5 4772 94 18 17 chr12 48286584 48287289 -95499166 - L1PA11 LINE L1 -2 6172 5467 27 0 0 0 chr12 48287298 48287325 -95499130 + AT_rich Low_complexity Low_complexity 1 27 0 1775 86 3 4 chr12 48287346 48287714 -95498741 - L1PA11 LINE L1 -669 5492 5125 * 5091 147 0 6 chr12 48287709 48288558 -95497897 + L1PA11 LINE L1 4265 5108 -1038 212 329 19 51 chr12 48289402 48289560 -95496895 + L2 LINE L2 2535 2687 -627 507 262 59 53 chr12 48290298 48290485 -95495970 + Charlie8 DNA MER1_type 1 188 -2229 6991 43 2 1 chr12 48292122 48292980 -95493475 - L1PA4 LINE L1 -4 6151 5293 4432 31 7 0 chr12 48292980 48293521 -95492934 + L1PA4 LINE L1 4732 5276 -870 27 73 0 0 chr12 48294085 48294140 -95492315 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr12 48296159 48296188 -95490267 + AT_rich Low_complexity Low_complexity 1 29 0 6887 151 8 22 chr12 48296892 48297992 -95488463 + L1P3 LINE L1 138 1274 -4835 189 74 0 0 chr12 48297992 48298019 -95488436 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6887 151 8 22 chr12 48298019 48298120 -95488335 + L1P3 LINE L1 1274 1375 -4734 348 299 28 7 chr12 48298969 48299113 -95487342 - L2 LINE L2 -270 3002 2856 201 181 60 129 chr12 48299342 48299458 -95486997 + L2 LINE L2 3206 3313 0 234 91 0 0 chr12 48300930 48300963 -95485492 + (A)n Simple_repeat Simple_repeat 1 33 0 201 74 0 0 chr12 48301108 48301135 -95485320 + (GA)n Simple_repeat Simple_repeat 1 27 0 44 35 0 0 chr12 48302469 48302527 -95483928 + AT_rich Low_complexity Low_complexity 1 58 0 1858 52 0 4 chr12 48302725 48302954 -95483501 - L1PA3 LINE L1 -3344 2802 2575 22029 37 5 0 chr12 48302954 48306279 -95480176 + L1PA3 LINE L1 2819 6152 -3 23 0 0 0 chr12 48306279 48306302 -95480153 + AT_rich Low_complexity Low_complexity 1 23 0 225 204 0 0 chr12 48306942 48306986 -95479469 + A-rich Low_complexity Low_complexity 1 44 0 930 170 35 6 chr12 48306992 48307163 -95479292 + AluJo SINE Alu 120 295 -17 27 29 0 0 chr12 48309022 48309056 -95477399 + AT_rich Low_complexity Low_complexity 1 34 0 36 0 0 0 chr12 48309611 48309647 -95476808 + AT_rich Low_complexity Low_complexity 1 36 0 185 355 19 32 chr12 48309682 48309837 -95476618 + L2 LINE L2 2845 2997 -275 1511 240 78 57 chr12 48310055 48310277 -95476178 - L1ME3A LINE L1 0 6170 5954 616 106 11 0 chr12 48310277 48310371 -95476084 - L1MA4 LINE L1 -5 6295 6201 1511 240 78 57 chr12 48310371 48310529 -95475926 - L1ME3A LINE L1 -216 5954 5801 2364 152 127 38 chr12 48310529 48311002 -95475453 + MLT2B2 LTR ERVL 1 515 0 1511 240 78 57 chr12 48311002 48311169 -95475286 - L1ME3A LINE L1 -369 5801 5610 2199 153 11 3 chr12 48311169 48311521 -95474934 - THE1B LTR MaLR 0 364 10 42918 40 21 3 chr12 48311521 48317545 -95468910 + L1PA4 LINE L1 15 6153 -2 1839 148 7 23 chr12 48318294 48318597 -95467858 + AluJb SINE Alu 1 298 -14 280 305 95 37 chr12 48318867 48319247 -95467208 - L1ME4a LINE L1 -92 6029 5628 209 243 0 0 chr12 48319316 48319353 -95467102 + MIR SINE MIR 30 66 -196 33 0 0 0 chr12 48320311 48320344 -95466111 + GC_rich Low_complexity Low_complexity 1 33 0 180 68 45 23 chr12 48320348 48320392 -95466063 + (CCCCG)n Simple_repeat Simple_repeat 2 46 0 319 296 90 85 chr12 48320459 48320939 -95465516 + L1M2 LINE L1 778 1259 -5590 301 390 0 0 chr12 48321091 48321232 -95465223 + G-rich Low_complexity Low_complexity 1 141 0 251 339 29 12 chr12 48321274 48321445 -95465010 + GA-rich Low_complexity Low_complexity 2 175 0 188 139 0 23 chr12 48321453 48321496 -95464959 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 327 179 0 0 chr12 48321647 48321714 -95464741 + G-rich Low_complexity Low_complexity 1 67 0 291 309 45 9 chr12 48322156 48322266 -95464189 - MER5A DNA MER1_type -74 115 2 193 333 70 53 chr12 48322784 48322898 -95463557 + MIR3 SINE MIR 82 197 -11 1687 166 3 36 chr12 48323105 48323407 -95463048 - AluJo SINE Alu -8 304 13 610 278 83 28 chr12 48323549 48323765 -95462690 - MIR SINE MIR -29 233 6 1370 75 6 0 chr12 48323879 48324053 -95462402 - MER107 DNA MER1_type 0 197 23 579 343 47 0 chr12 48324182 48324415 -95462040 + L2 LINE L2 2531 2774 -540 341 330 45 45 chr12 48324576 48324800 -95461655 + L2 LINE L2 2838 3061 -211 22 0 0 0 chr12 48324998 48325020 -95461435 + AT_rich Low_complexity Low_complexity 1 22 0 48 43 0 0 chr12 48327207 48327276 -95459179 + GC_rich Low_complexity Low_complexity 1 69 0 1030 296 90 19 chr12 48328651 48329117 -95457338 + MLT1D LTR MaLR 7 505 0 6036 65 1 1 chr12 48329450 48330214 -95456241 + L1PA4 LINE L1 5369 6132 -23 248 203 14 40 chr12 48331755 48331829 -95454626 + C-rich Low_complexity Low_complexity 4 75 0 291 110 14 41 chr12 48331930 48332003 -95454452 + (TCCCC)n Simple_repeat Simple_repeat 3 73 0 4982 94 1 1 chr12 48332236 48332927 -95453528 + L1P LINE L1 2520 3210 -2936 215 233 23 23 chr12 48333179 48333265 -95453190 + C-rich Low_complexity Low_complexity 6 91 0 3298 92 2 2 chr12 48333399 48333833 -95452622 + L1PB2 LINE L1 5716 6149 -2 981 146 12 24 chr12 48333845 48334009 -95452446 + FRAM SINE Alu 1 162 -14 1921 146 0 7 chr12 48334013 48334307 -95452148 + AluSc SINE Alu 1 292 -17 191 211 0 0 chr12 48334334 48334372 -95452083 + MER5B DNA MER1_type 141 178 0 334 148 98 0 chr12 48334865 48334926 -95451529 - MLT1C LTR MaLR 0 467 401 2018 121 36 23 chr12 48334929 48335236 -95451219 + AluSx SINE Alu 1 311 -1 188 386 0 0 chr12 48335486 48335556 -95450899 + L2 LINE L2 3201 3270 -2 543 303 65 13 chr12 48336404 48336635 -95449820 + HsTC2 DNA Tc2 1 243 -1655 213 318 8 8 chr12 48336832 48336964 -95449491 + (CCCG)n Simple_repeat Simple_repeat 3 134 0 23 54 0 0 chr12 48337024 48337061 -95449394 + GC_rich Low_complexity Low_complexity 1 37 0 321 313 112 45 chr12 48337338 48337562 -95448893 - MIR SINE MIR -12 250 12 509 307 34 52 chr12 48337597 48337864 -95448591 + MIR SINE MIR 1 262 0 25 65 0 0 chr12 48338298 48338344 -95448111 + GC_rich Low_complexity Low_complexity 1 46 0 674 220 187 14 chr12 48338929 48339143 -95447312 - MIR SINE MIR -10 252 2 457 286 243 9 chr12 48339207 48339417 -95447038 + MER115 DNA AcHobo 12 270 -423 301 129 14 71 chr12 48339834 48339904 -95446551 - L1P4 LINE L1 -650 5524 5459 27 0 0 0 chr12 48339905 48339932 -95446523 + AT_rich Low_complexity Low_complexity 1 27 0 9235 55 2 2 chr12 48339953 48341203 -95445252 - L1P4 LINE L1 -669 5492 4242 321 272 129 14 chr12 48341747 48341894 -95444561 - L1ME LINE L1 -449 5672 5509 253 288 0 0 chr12 48342486 48342559 -95443896 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 22 0 0 0 chr12 48342668 48342690 -95443765 + AT_rich Low_complexity Low_complexity 1 22 0 2366 94 3 0 chr12 48343446 48343743 -95442712 - AluSp SINE Alu -15 298 1 237 65 0 0 chr12 48343890 48343921 -95442534 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 185 0 0 chr12 48343971 48344025 -95442430 + (TA)n Simple_repeat Simple_repeat 1 54 0 2127 106 7 0 chr12 48344515 48344808 -95441647 - AluSp SINE Alu -18 295 1 21 0 0 0 chr12 48345185 48345206 -95441249 + AT_rich Low_complexity Low_complexity 1 21 0 410 64 500 0 chr12 48345217 48345327 -95441128 - AluSg/x SINE Alu -11 301 137 707 293 104 40 chr12 48346127 48346503 -95439952 + L2 LINE L2 2890 3289 -24 225 320 41 25 chr12 48347155 48347277 -95439178 + MER5A DNA MER1_type 39 162 -27 4471 102 2 10 chr12 48349129 48349744 -95436711 + LTR9 LTR ERV1 3 612 0 9472 128 67 15 chr12 48349759 48351316 -95435139 + HUERS-P3 LTR ERV1 15 1652 -7267 587 78 0 0 chr12 48351330 48351407 -95435048 + HUERS-P3 LTR ERV1 1831 1907 -7012 9993 143 19 15 chr12 48351430 48353055 -95433400 + HUERS-P3 LTR ERV1 2069 3700 -5219 5111 134 4 0 chr12 48353041 48353762 -95432693 + HUERS-P3 LTR ERV1 4387 5110 -3809 * 882 162 22 11 chr12 48353746 48353925 -95432530 + LTR9-int LTR ERV1 3943 4123 -3693 * 569 198 8 0 chr12 48353931 48354057 -95432398 + LTR9-int LTR ERV1 2446 2572 -2443 1480 134 0 5 chr12 48354385 48354601 -95431854 + LTR9-int LTR ERV1 8704 8918 -1 3966 135 15 7 chr12 48354602 48355208 -95431247 + LTR9 LTR ERV1 2 612 0 2845 6 0 3 chr12 48355258 48355570 -95430885 + AluYa5 SINE Alu 1 311 0 714 272 16 26 chr12 48356117 48356308 -95430147 + L1PA13 LINE L1 1070 1258 -5529 14488 192 21 9 chr12 48356311 48359759 -95426696 + L1PA13 LINE L1 1396 4892 -1905 2320 95 0 0 chr12 48359761 48360066 -95426389 + AluY SINE Alu 1 305 -6 269 228 51 193 chr12 48360115 48360312 -95426143 + MIR SINE MIR 1 169 -93 297 0 0 0 chr12 48360313 48360346 -95426109 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 2461 51 7 0 chr12 48360925 48361221 -95425234 - AluY SINE Alu -13 298 1 292 313 100 27 chr12 48363273 48363423 -95423032 + MIR3 SINE MIR 42 202 -6 360 286 68 20 chr12 48364007 48364154 -95422301 + MIR SINE MIR 20 173 -89 1353 242 14 3 chr12 48365084 48365373 -95421082 - AluJb SINE Alu -20 292 1 22 0 0 0 chr12 48367330 48367352 -95419103 + AT_rich Low_complexity Low_complexity 1 22 0 254 152 5 98 chr12 48367864 48368048 -95418407 + (TAAA)n Simple_repeat Simple_repeat 4 170 0 57 39 0 0 chr12 48368048 48368126 -95418329 + AT_rich Low_complexity Low_complexity 1 78 0 386 183 15 23 chr12 48368126 48368257 -95418198 + (TA)n Simple_repeat Simple_repeat 1 130 0 551 273 35 17 chr12 48368698 48368870 -95417585 + MIR SINE MIR 6 180 -82 360 0 0 0 chr12 48371647 48371687 -95414768 + (TA)n Simple_repeat Simple_repeat 2 41 0 453 19 0 0 chr12 48373176 48373230 -95413225 + (TG)n Simple_repeat Simple_repeat 1 54 0 33 56 0 0 chr12 48373350 48373404 -95413051 + AT_rich Low_complexity Low_complexity 1 54 0 2426 72 0 13 chr12 48373666 48373971 -95412484 + AluY SINE Alu 1 301 -10 996 216 30 13 chr12 48374082 48374314 -95412141 + MER106A DNA MER1_type 1 236 0 2209 114 146 13 chr12 48374486 48374864 -95411591 + MSTA LTR MaLR 1 428 0 29 47 0 0 chr12 48374866 48374909 -95411546 + AT_rich Low_complexity Low_complexity 1 43 0 2162 119 0 7 chr12 48374919 48375213 -95411242 + AluSx SINE Alu 3 294 -18 5162 266 114 77 chr12 48375390 48378017 -95408438 - L2 LINE L2 -554 2760 37 664 307 40 79 chr12 48378067 48378445 -95408010 - L2 LINE L2 -2147 1167 805 992 200 171 33 chr12 48378445 48378865 -95407590 - Charlie4a DNA MER1_type 0 508 31 549 295 14 0 chr12 48378893 48379032 -95407423 - L2 LINE L2 -2505 809 669 26 0 0 0 chr12 48380931 48380957 -95405498 + AT_rich Low_complexity Low_complexity 1 26 0 7622 26 2 0 chr12 48380957 48382521 -95403934 - L1PA3 LINE L1 -3 6152 4587 17309 33 0 1 chr12 48382521 48384626 -95401829 + L1PA3 LINE L1 2473 4576 -1570 344 263 154 62 chr12 48384753 48385012 -95401443 + MLT1L LTR MaLR 38 320 -295 1040 272 106 77 chr12 48385518 48386407 -95400048 + L2 LINE L2 2305 3212 -101 191 361 16 0 chr12 48386419 48386480 -95399975 + L2 LINE L2 1846 1907 -1407 1447 127 165 38 chr12 48386480 48386826 -95399629 + MLT1B LTR MaLR 1 390 0 22 56 0 0 chr12 48386895 48386931 -95399524 + AT_rich Low_complexity Low_complexity 1 36 0 1853 160 7 0 chr12 48386932 48387241 -95399214 - AluSx SINE Alu 0 311 1 297 0 0 0 chr12 48387414 48387447 -95399008 + (TG)n Simple_repeat Simple_repeat 2 34 0 1384 181 103 25 chr12 48387516 48387836 -95398619 - MER7A DNA MER2_type -1 345 3 489 272 40 12 chr12 48388241 48388414 -95398041 + L1ME LINE L1 5561 5738 -383 610 301 155 43 chr12 48389080 48389691 -95396764 + L2 LINE L2 2641 3313 0 200 353 66 45 chr12 48390968 48391038 -95395417 + L2 LINE L2 2519 2586 -728 2312 76 0 38 chr12 48391038 48391352 -95395103 - AluY SINE Alu -9 302 1 200 353 66 45 chr12 48391352 48391570 -95394885 + L2 LINE L2 2586 2813 -501 779 301 58 56 chr12 48392176 48392697 -95393758 - L2 LINE L2 -4 3309 2763 963 57 8 0 chr12 48392711 48392835 -95393620 - AluY SINE Alu 0 311 187 380 293 64 14 chr12 48392844 48392984 -95393471 - L2 LINE L2 -575 2739 2593 207 273 0 0 chr12 48393017 48393072 -95393383 + L2 LINE L2 3259 3313 0 1440 246 47 2 chr12 48393508 48393914 -95392541 - MER63B DNA MER1_type -2 434 11 23 0 0 0 chr12 48394508 48394531 -95391924 + AT_rich Low_complexity Low_complexity 1 23 0 246 289 41 25 chr12 48394557 48394678 -95391777 + L1ME4a LINE L1 5951 6073 -48 627 47 12 0 chr12 48394932 48395017 -95391438 - L1PA13 LINE L1 -8 6155 6070 463 225 0 8 chr12 48395488 48395608 -95390847 - L1MA9 LINE L1 -10 6302 6184 2040 148 0 0 chr12 48396777 48397075 -95389380 + AluSx SINE Alu 1 298 -14 441 254 0 27 chr12 48397363 48397473 -95388982 - MIR SINE MIR -14 248 142 * 1752 317 84 54 chr12 48397462 48398912 -95387543 + L2 LINE L2 1820 3313 0 378 309 79 0 chr12 48398943 48399069 -95387386 - MIR SINE MIR -115 147 12 32 0 0 0 chr12 48400202 48400234 -95386221 + AT_rich Low_complexity Low_complexity 1 32 0 304 230 47 54 chr12 48401088 48401236 -95385219 + LTR16C LTR ERVL 287 433 -58 433 239 131 0 chr12 48402327 48402457 -95383998 + MIR SINE MIR 106 252 -10 279 177 0 0 chr12 48402467 48402529 -95383926 + (CAT)n Simple_repeat Simple_repeat 3 64 0 291 285 146 46 chr12 48402574 48402704 -95383751 - MIR SINE MIR -71 191 49 324 211 165 37 chr12 48403603 48403712 -95382743 - L2 LINE L2 -8 3305 3183 355 294 34 17 chr12 48403833 48403952 -95382503 + MIR SINE MIR 19 139 -123 253 288 0 0 chr12 48404978 48405051 -95381404 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 22 0 0 0 chr12 48405160 48405182 -95381273 + AT_rich Low_complexity Low_complexity 1 22 0 2314 94 3 0 chr12 48405938 48406235 -95380220 - AluSp SINE Alu -15 298 1 237 65 0 0 chr12 48406382 48406413 -95380042 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 185 0 0 chr12 48406463 48406517 -95379938 + (TA)n Simple_repeat Simple_repeat 1 54 0 2073 106 7 0 chr12 48407007 48407300 -95379155 - AluSp SINE Alu -18 295 1 21 0 0 0 chr12 48407677 48407698 -95378757 + AT_rich Low_complexity Low_complexity 1 21 0 405 102 430 2 chr12 48407709 48407837 -95378618 - AluSg/x SINE Alu -1 299 133 695 293 104 40 chr12 48408619 48408995 -95377460 + L2 LINE L2 2890 3289 -24 185 397 34 20 chr12 48409623 48409769 -95376686 - MER5A DNA MER1_type -3 186 39 4435 102 2 10 chr12 48411621 48412236 -95374219 + LTR9 LTR ERV1 3 612 0 9378 128 67 15 chr12 48412251 48413808 -95372647 + HUERS-P3 LTR ERV1 15 1652 -7267 584 78 0 0 chr12 48413822 48413899 -95372556 + HUERS-P3 LTR ERV1 1831 1907 -7012 9935 143 19 15 chr12 48413922 48415547 -95370908 + HUERS-P3 LTR ERV1 2069 3700 -5219 5080 135 4 4 chr12 48415533 48416265 -95370190 + HUERS-P3 LTR ERV1 4387 5118 -3801 * 894 162 22 11 chr12 48416238 48416417 -95370038 + LTR9-int LTR ERV1 3943 4123 -3693 * 575 198 8 0 chr12 48416423 48416549 -95369906 + LTR9-int LTR ERV1 2446 2572 -2443 1466 134 0 5 chr12 48416877 48417093 -95369362 + LTR9-int LTR ERV1 8704 8918 -1 3928 135 15 7 chr12 48417094 48417700 -95368755 + LTR9 LTR ERV1 2 612 0 2804 6 0 3 chr12 48417750 48418062 -95368393 + AluYa5 SINE Alu 1 311 0 686 272 16 26 chr12 48418609 48418800 -95367655 + L1PA13 LINE L1 1070 1258 -5529 20272 173 24 15 chr12 48418803 48422253 -95364202 + L1PA13 LINE L1 1396 4911 -1903 2276 101 0 0 chr12 48422253 48422559 -95363896 + AluY SINE Alu 1 306 -5 20272 173 24 15 chr12 48422559 48424481 -95361974 + L1PA13 LINE L1 4911 6813 -1 2297 88 3 13 chr12 48425104 48425411 -95361044 + AluY SINE Alu 1 304 -7 24 0 0 0 chr12 48426472 48426496 -95359959 + AT_rich Low_complexity Low_complexity 1 24 0 231 288 25 25 chr12 48427105 48427185 -95359270 - L2 LINE L2 -9 3304 3225 248 346 7 44 chr12 48427379 48427515 -95358940 - MIR SINE MIR -112 150 20 379 268 103 62 chr12 48428546 48428677 -95357778 - MIR SINE MIR -1 261 116 1559 152 28 10 chr12 48428677 48428967 -95357488 + AluJb SINE Alu 1 295 -17 379 268 103 62 chr12 48428967 48429059 -95357396 - MIR SINE MIR -146 116 29 317 281 329 12 chr12 48429084 48429248 -95357207 + MIR SINE MIR 13 228 -34 328 335 97 7 chr12 48430032 48430187 -95356268 - MIR SINE MIR -56 206 38 21 36 0 0 chr12 48431055 48431083 -95355372 + AT_rich Low_complexity Low_complexity 1 28 0 270 103 0 0 chr12 48431171 48431210 -95355245 + tRNA-Gln-CAG tRNA tRNA 1 39 -36 255 277 84 24 chr12 48432213 48432296 -95354159 - MER5A DNA MER1_type -92 97 10 2151 85 4 0 chr12 48433253 48433561 -95352894 - AluY SINE Alu 0 309 1 859 210 113 107 chr12 48433626 48434084 -95352371 + MLT1C LTR MaLR 6 466 -1 493 323 59 5 chr12 48437212 48437432 -95349023 + L1ME LINE L1 5476 5707 -414 318 205 98 27 chr12 48437978 48438090 -95348365 + L1MCc LINE L1 19 138 -6285 618 316 7 29 chr12 48438096 48438368 -95348087 + L1MCc LINE L1 199 464 -5959 846 285 107 53 chr12 48438531 48439231 -95347224 + L1MCc LINE L1 974 1635 -5487 228 35 0 0 chr12 48439231 48439260 -95347195 + (CA)n Simple_repeat Simple_repeat 1 29 0 846 285 107 53 chr12 48439260 48439825 -95346630 + L1MCc LINE L1 1635 2545 -4577 500 263 56 56 chr12 48439891 48440157 -95346298 + L1MEc LINE L1 1555 1820 -4576 209 222 16 0 chr12 48440221 48440284 -95346171 + (TA)n Simple_repeat Simple_repeat 1 64 0 2219 191 47 0 chr12 48440394 48440803 -95345652 + MSTB1 LTR MaLR 5 432 0 24 0 0 0 chr12 48440978 48441002 -95345453 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr12 48441087 48441135 -95345320 + AT_rich Low_complexity Low_complexity 1 48 0 306 179 0 24 chr12 48441175 48441298 -95345157 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 302 321 65 33 chr12 48441341 48441525 -95344930 + L1MEc LINE L1 1886 2075 -4321 351 96 0 0 chr12 48441588 48441640 -95344815 + (CA)n Simple_repeat Simple_repeat 2 53 0 756 252 46 8 chr12 48441649 48441989 -95344466 + L1MEc LINE L1 2107 2417 -3798 1906 58 4 0 chr12 48442006 48442249 -95344206 - L1PA5 LINE L1 -1 6153 5910 688 233 86 45 chr12 48442255 48442500 -95343955 + L2 LINE L2 3057 3311 -2 416 246 100 18 chr12 48442474 48442584 -95343871 - L2 LINE L2 -8 3305 3187 * 22 35 0 0 chr12 48443154 48443183 -95343272 + AT_rich Low_complexity Low_complexity 1 29 0 1662 140 7 58 chr12 48444644 48444952 -95341503 - AluJb SINE Alu -14 298 7 33 0 0 0 chr12 48445557 48445590 -95340865 + AT_rich Low_complexity Low_complexity 1 33 0 195 265 0 0 chr12 48446524 48446573 -95339882 + L2 LINE L2 3265 3313 0 382 311 58 58 chr12 48446859 48447007 -95339448 + MIR SINE MIR 20 167 -95 1843 141 7 4 chr12 48447007 48447283 -95339172 + AluSx SINE Alu 1 277 -35 513 0 0 0 chr12 48447287 48447344 -95339111 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 382 311 58 58 chr12 48447344 48447431 -95339024 + MIR SINE MIR 169 260 -2 3529 123 55 17 chr12 48447582 48448169 -95338286 + MER4B LTR ERV1 2 610 0 195 129 0 0 chr12 48448542 48448573 -95337882 + (T)n Simple_repeat Simple_repeat 1 31 0 405 0 0 0 chr12 48449885 48449930 -95336525 + (TA)n Simple_repeat Simple_repeat 1 45 0 224 287 89 69 chr12 48449933 48450034 -95336421 - MIR SINE MIR -65 143 41 686 277 23 6 chr12 48450303 48450480 -95335975 - MIR SINE MIR -76 186 7 21 0 0 0 chr12 48450636 48450657 -95335798 + AT_rich Low_complexity Low_complexity 1 21 0 529 192 117 0 chr12 48450657 48450777 -95335678 - AluJb SINE Alu -178 134 1 965 56 0 16 chr12 48452113 48452238 -95334217 + L1PA3 LINE L1 6030 6152 -3 21 57 0 0 chr12 48452516 48452551 -95333904 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 48453415 48453437 -95333018 + AT_rich Low_complexity Low_complexity 1 22 0 226 331 58 29 chr12 48454236 48454375 -95332080 - MIR SINE MIR -106 156 14 492 259 23 15 chr12 48456935 48457066 -95329389 + MIR SINE MIR 33 164 -98 273 216 14 68 chr12 48457112 48457260 -95329195 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 2107 121 10 0 chr12 48457602 48457908 -95328547 - AluSg SINE Alu -1 309 1 210 37 0 0 chr12 48457909 48457936 -95328519 + (TTA)n Simple_repeat Simple_repeat 2 28 0 746 120 0 0 chr12 48457941 48458049 -95328406 - AluSg/x SINE Alu -29 283 176 395 38 19 0 chr12 48459061 48459114 -95327341 + (TG)n Simple_repeat Simple_repeat 1 54 0 318 26 0 0 chr12 48460547 48460586 -95325869 + (CA)n Simple_repeat Simple_repeat 1 39 0 46 45 0 0 chr12 48461503 48461570 -95324885 + AT_rich Low_complexity Low_complexity 1 67 0 769 144 93 7 chr12 48461829 48461968 -95324487 - AluSp SINE Alu -162 151 1 189 107 0 0 chr12 48462832 48462860 -95323595 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr12 48463009 48463037 -95323418 + AT_rich Low_complexity Low_complexity 1 28 0 248 255 0 0 chr12 48463526 48463577 -95322878 - Charlie4 DNA MER1_type -1910 51 1 21 0 0 0 chr12 48463663 48463684 -95322771 + AT_rich Low_complexity Low_complexity 1 21 0 183 296 56 28 chr12 48464996 48465067 -95321388 - L2 LINE L2 -213 3059 2987 231 275 66 11 chr12 48466138 48466229 -95320226 + MIR3 SINE MIR 112 207 -1 257 374 44 0 chr12 48466498 48466589 -95319866 + L2 LINE L2 3183 3277 -36 182 320 0 0 chr12 48466649 48466699 -95319756 - MIR SINE MIR 0 262 213 645 139 0 0 chr12 48466711 48466819 -95319636 + (CA)n Simple_repeat Simple_repeat 2 109 0 289 255 21 113 chr12 48466821 48466962 -95319493 - MIR SINE MIR -71 191 64 306 0 0 0 chr12 48467481 48467515 -95318940 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 201 83 28 28 chr12 48467809 48467845 -95318610 + (TTCTC)n Simple_repeat Simple_repeat 4 39 0 213 363 115 34 chr12 48468070 48468547 -95317908 + L2 LINE L2 2443 2958 -356 205 299 30 0 chr12 48468865 48468932 -95317523 + L2 LINE L2 3240 3308 -5 272 428 125 19 chr12 48469177 48469497 -95316958 + L2 LINE L2 2919 3272 0 1181 274 74 21 chr12 48470047 48470477 -95315978 + MER77 LTR ERV1 146 598 -7 24 32 0 0 chr12 48470593 48470624 -95315831 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr12 48470731 48470771 -95315684 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr12 48471375 48471405 -95315050 + AT_rich Low_complexity Low_complexity 1 30 0 425 301 38 0 chr12 48472383 48472516 -95313939 - MIR SINE MIR -2 260 123 263 288 0 0 chr12 48472519 48472592 -95313863 + (CTA)n Simple_repeat Simple_repeat 1 73 0 191 343 0 0 chr12 48472669 48472736 -95313719 - MIR SINE MIR -13 249 183 298 288 104 24 chr12 48472833 48472958 -95313497 - MIR SINE MIR -105 157 23 1308 115 0 16 chr12 48473369 48473560 -95312895 - AluSg/x SINE Alu 0 312 125 27 0 0 0 chr12 48474126 48474153 -95312302 + AT_rich Low_complexity Low_complexity 1 27 0 523 224 109 14 chr12 48474864 48474967 -95311488 - MER20 DNA MER1_type -4 215 93 414 0 0 0 chr12 48474967 48475013 -95311442 + (CA)n Simple_repeat Simple_repeat 2 47 0 523 224 109 14 chr12 48475013 48475056 -95311399 - MER20 DNA MER1_type -126 93 55 2276 93 13 3 chr12 48475235 48475545 -95310910 + AluSq SINE Alu 1 313 0 1729 18 23 9 chr12 48475613 48475831 -95310624 + L1PA2 LINE L1 5933 6153 -2 217 164 36 18 chr12 48475861 48475916 -95310539 + A-rich Low_complexity Low_complexity 3 58 0 634 292 23 50 chr12 48476448 48476708 -95309747 + MIR SINE MIR 10 262 0 270 81 0 0 chr12 48476829 48476866 -95309589 + (A)n Simple_repeat Simple_repeat 1 37 0 253 310 37 53 chr12 48476975 48477162 -95309293 - MIR SINE MIR -32 230 47 423 0 0 0 chr12 48477281 48477328 -95309127 + (TG)n Simple_repeat Simple_repeat 2 48 0 417 20 0 0 chr12 48478005 48478055 -95308400 + (CA)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr12 48479543 48479581 -95306874 + (TA)n Simple_repeat Simple_repeat 2 39 0 558 273 35 17 chr12 48482358 48482530 -95303925 - MIR SINE MIR -82 180 6 377 189 31 8 chr12 48482971 48483098 -95303357 + (TA)n Simple_repeat Simple_repeat 1 130 0 71 33 0 0 chr12 48483098 48483190 -95303265 + AT_rich Low_complexity Low_complexity 1 92 0 254 152 5 98 chr12 48483190 48483374 -95303081 + (TTTA)n Simple_repeat Simple_repeat 4 170 0 22 0 0 0 chr12 48483886 48483908 -95302547 + AT_rich Low_complexity Low_complexity 1 22 0 1331 242 14 3 chr12 48485865 48486154 -95300301 + AluJb SINE Alu 1 292 -20 361 286 68 20 chr12 48487084 48487231 -95299224 - MIR SINE MIR -89 173 20 293 313 100 27 chr12 48487815 48487965 -95298490 - MIR3 SINE MIR -6 202 42 2411 51 7 0 chr12 48490017 48490312 -95296143 + AluY SINE Alu 1 297 -14 333 0 0 0 chr12 48490891 48490928 -95295527 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 268 228 51 193 chr12 48490929 48491126 -95295329 - MIR SINE MIR -93 169 1 2451 59 0 0 chr12 48491175 48491480 -95294975 - AluY SINE Alu -6 305 1 317 264 72 36 chr12 48491536 48491751 -95294704 - LTR65 LTR ERV1 -14 654 342 334 242 81 0 chr12 48491885 48491984 -95294471 - LTR65 LTR ERV1 -532 137 31 21 36 0 0 chr12 48492308 48492336 -95294119 + AT_rich Low_complexity Low_complexity 1 28 0 2409 0 4 0 chr12 48493632 48493905 -95292550 + L1PA2 LINE L1 5881 6154 -1 390 290 74 25 chr12 48494230 48494392 -95292063 + MIR SINE MIR 9 178 -84 936 168 0 13 chr12 48494971 48495126 -95291329 + FRAM SINE Alu 1 152 -24 22 0 0 0 chr12 48495126 48495148 -95291307 + AT_rich Low_complexity Low_complexity 1 22 0 1376 30 0 0 chr12 48495566 48495731 -95290724 - L1PA4 LINE L1 -3 6152 5988 396 0 0 0 chr12 48497214 48497258 -95289197 + (TG)n Simple_repeat Simple_repeat 2 45 0 196 42 0 0 chr12 48497447 48497471 -95288984 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1830 167 0 0 chr12 48497471 48497752 -95288703 - AluJb SINE Alu -1 304 1 652 308 34 28 chr12 48498637 48498959 -95287496 - L2 LINE L2 -2 3311 2988 185 333 0 0 chr12 48500390 48500438 -95286017 + MIR SINE MIR 30 77 -131 372 223 43 0 chr12 48500836 48500930 -95285525 + MIR SINE MIR 93 190 -72 680 224 157 25 chr12 48500978 48501484 -95284971 + MER76 LTR ERV 6 638 -50 21 71 0 0 chr12 48501517 48501559 -95284896 + AT_rich Low_complexity Low_complexity 1 42 0 209 229 21 0 chr12 48501733 48501781 -95284674 + GA-rich Low_complexity Low_complexity 1 49 0 442 152 13 0 chr12 48502040 48502119 -95284336 - MADE1 DNA Mariner 0 80 1 2206 109 0 20 chr12 48502310 48502614 -95283841 + AluSx SINE Alu 1 298 -14 485 220 206 81 chr12 48503852 48504148 -95282307 - MLT1J2 LTR MaLR -24 426 94 2113 159 29 21 chr12 48504630 48505013 -95281442 + MLT1B LTR MaLR 3 388 -2 24 53 0 0 chr12 48505704 48505742 -95280713 + AT_rich Low_complexity Low_complexity 1 38 0 633 216 81 0 chr12 48507725 48507873 -95278582 - MER45A DNA AcHobo -18 160 1 22 35 0 0 chr12 48508561 48508590 -95277865 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 48509016 48509045 -95277410 + AT_rich Low_complexity Low_complexity 1 29 0 308 309 45 9 chr12 48509734 48509844 -95276611 - MER5A DNA MER1_type -74 115 2 212 333 70 53 chr12 48510363 48510477 -95275978 + MIR3 SINE MIR 82 197 -11 1685 169 3 36 chr12 48510684 48510986 -95275469 - AluJo SINE Alu -8 304 13 618 278 83 28 chr12 48511128 48511344 -95275111 - MIR SINE MIR -29 233 6 1341 75 6 0 chr12 48511458 48511632 -95274823 - MER107 DNA MER1_type 0 197 23 580 343 47 0 chr12 48511761 48511994 -95274461 + L2 LINE L2 2531 2774 -540 349 330 45 45 chr12 48512155 48512379 -95274076 + L2 LINE L2 2838 3061 -211 22 0 0 0 chr12 48512577 48512599 -95273856 + AT_rich Low_complexity Low_complexity 1 22 0 7593 27 0 1 chr12 48514750 48515816 -95270639 + L1PA4 LINE L1 5117 6155 0 22 0 0 0 chr12 48516013 48516035 -95270420 + AT_rich Low_complexity Low_complexity 1 22 0 192 179 0 0 chr12 48516084 48516123 -95270332 + (CA)n Simple_repeat Simple_repeat 2 40 0 211 152 0 43 chr12 48516273 48516319 -95270136 + A-rich Low_complexity Low_complexity 4 47 0 192 324 28 0 chr12 48517412 48517483 -95268972 + MIR SINE MIR 187 259 -3 21 36 0 0 chr12 48517642 48517670 -95268785 + AT_rich Low_complexity Low_complexity 1 28 0 23 92 0 0 chr12 48517701 48517766 -95268689 + AT_rich Low_complexity Low_complexity 1 65 0 271 64 39 51 chr12 48518566 48518644 -95267811 + (TTAA)n Simple_repeat Simple_repeat 4 80 0 1799 242 121 32 chr12 48518670 48519381 -95267074 + L1ME3A LINE L1 5366 6139 -31 498 292 77 37 chr12 48519477 48519836 -95266619 - L2 LINE L2 -213 3059 2680 906 207 89 57 chr12 48519843 48520157 -95266298 + MER5C DNA MER1_type 1 324 0 1455 129 56 43 chr12 48520339 48520662 -95265793 + THE1C LTR MaLR 1 355 0 185 402 0 0 chr12 48521230 48521317 -95265138 + L2 LINE L2 2720 2806 -508 185 271 66 57 chr12 48521386 48521508 -95264947 - L2 LINE L2 -1800 1514 1392 * 767 193 37 43 chr12 48521440 48521627 -95264828 + MIR SINE MIR 77 262 0 182 321 0 0 chr12 48523549 48523605 -95262850 - L2 LINE L2 -6 3266 3211 4472 150 8 12 chr12 48525110 48525876 -95260579 - L1PB4 LINE L1 -1 6155 5393 1609 27 0 0 chr12 48526365 48526550 -95259905 - L1PA3 LINE L1 -5 6150 5966 1923 156 0 19 chr12 48526918 48527233 -95259222 + AluJb SINE Alu 3 311 -1 23 0 0 0 chr12 48527947 48527970 -95258485 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 48530223 48530257 -95256198 + AT_rich Low_complexity Low_complexity 1 34 0 1528 192 0 39 chr12 48530472 48530779 -95255676 - AluJb SINE Alu -15 297 3 21 36 0 0 chr12 48531763 48531791 -95254664 + AT_rich Low_complexity Low_complexity 1 28 0 1787 154 21 0 chr12 48532734 48533020 -95253435 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr12 48533020 48533050 -95253405 + AT_rich Low_complexity Low_complexity 1 30 0 2016 114 11 4 chr12 48533053 48533389 -95253066 + AluSx SINE Alu 1 338 0 426 259 132 109 chr12 48535970 48536627 -95249828 + L1M2 LINE L1 658 1405 -5444 246 264 0 28 chr12 48537087 48537159 -95249296 + L2 LINE L2 3187 3256 -57 1961 115 0 21 chr12 48539592 48539878 -95246577 + AluSq SINE Alu 32 311 -2 382 340 187 5 chr12 48541478 48541681 -95244774 - MIR SINE MIR -21 241 2 44 35 0 0 chr12 48542376 48542434 -95244021 + AT_rich Low_complexity Low_complexity 1 58 0 1861 44 0 0 chr12 48542632 48542860 -95243595 - L1PA4 LINE L1 -3344 2802 2575 20842 35 1 0 chr12 48542860 48546187 -95240268 + L1PA4 LINE L1 2819 6151 -4 1832 148 7 23 chr12 48546939 48547242 -95239213 + AluJb SINE Alu 1 298 -14 285 303 87 29 chr12 48547512 48547859 -95238596 - L1ME4a LINE L1 -92 6029 5663 213 293 0 0 chr12 48547959 48548000 -95238455 + MIR SINE MIR 26 66 -196 431 317 147 21 chr12 48548925 48549300 -95237155 - MLT1L LTR MaLR -93 522 101 558 303 34 52 chr12 48549364 48549631 -95236824 - MIR SINE MIR 0 262 1 352 313 112 45 chr12 48549666 48549890 -95236565 + MIR SINE MIR 12 250 -12 207 328 0 0 chr12 48550828 48550895 -95235560 + GA-rich Low_complexity Low_complexity 2 68 0 359 276 41 89 chr12 48552264 48552557 -95233898 + L1M4 LINE L1 4860 5138 -1008 2347 84 6 28 chr12 48552557 48552877 -95233578 + AluSq SINE Alu 1 313 0 477 339 121 18 chr12 48552879 48553014 -95233441 - L2 LINE L2 -1567 1747 1627 1598 266 107 15 chr12 48553014 48553556 -95232899 + MLT1E LTR MaLR 1 592 -1 477 339 121 18 chr12 48553556 48553874 -95232581 - L2 LINE L2 -1687 1627 1247 185 326 0 0 chr12 48553894 48553943 -95232512 + MIR SINE MIR 1 49 -213 1115 243 143 7 chr12 48553949 48554361 -95232094 - MLT1D LTR MaLR -8 497 30 371 301 153 28 chr12 48554392 48554568 -95231887 + MIR SINE MIR 52 249 -13 315 312 28 28 chr12 48555735 48555844 -95230611 + MER81 DNA DNA 6 114 0 1494 286 63 29 chr12 48556269 48556899 -95229556 + MLT2F LTR ERVL 1 652 -11 368 319 15 15 chr12 48556928 48557063 -95229392 - MIR SINE MIR -108 154 20 501 252 9 0 chr12 48557279 48557390 -95229065 - MIR SINE MIR -21 241 130 4084 23 0 6 chr12 48558465 48558946 -95227509 - L1PA2 LINE L1 -4 6151 5674 213 338 27 0 chr12 48559121 48559195 -95227260 - MIR SINE MIR -55 153 78 452 274 0 26 chr12 48559865 48559978 -95226477 + L2 LINE L2 3203 3312 -1 2565 115 3 6 chr12 48560022 48560387 -95226068 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr12 48561562 48561603 -95224852 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr12 48561807 48561838 -95224617 + AT_rich Low_complexity Low_complexity 1 31 0 716 255 94 16 chr12 48562293 48562485 -95223970 + MER58A DNA MER1_type 2 208 -16 21 36 0 0 chr12 48562868 48562896 -95223559 + AT_rich Low_complexity Low_complexity 1 28 0 2126 127 48 0 chr12 48562946 48563300 -95223155 + L1PA10 LINE L1 4142 4512 -1634 * 6093 39 5 0 chr12 48563299 48564065 -95222390 - L1PA4 LINE L1 -2866 3280 2511 17143 36 1 0 chr12 48564065 48566928 -95219527 + L1PA4 LINE L1 3286 6155 0 6067 109 14 2 chr12 48566918 48568583 -95217872 + L1PA10 LINE L1 4482 6164 -4 * 23 68 0 0 chr12 48569220 48569264 -95217191 + AT_rich Low_complexity Low_complexity 1 44 0 1490 190 21 31 chr12 48569321 48569457 -95216998 + AluJb SINE Alu 1 137 -175 225 0 0 0 chr12 48569457 48569482 -95216973 + (CATA)n Simple_repeat Simple_repeat 2 26 0 1490 190 21 31 chr12 48569482 48569635 -95216820 + AluJb SINE Alu 137 287 -25 368 240 0 0 chr12 48569676 48569751 -95216704 + L2 LINE L2 1868 1942 -1372 200 317 119 30 chr12 48572097 48572198 -95214257 - L2 LINE L2 -9 3263 3154 21 0 0 0 chr12 48572803 48572824 -95213631 + AT_rich Low_complexity Low_complexity 1 21 0 29 101 0 0 chr12 48573377 48573476 -95212979 + AT_rich Low_complexity Low_complexity 1 99 0 1128 301 97 33 chr12 48573482 48574368 -95212087 + HAL1 LINE L1 1231 2173 -334 24 0 0 0 chr12 48574598 48574622 -95211833 + AT_rich Low_complexity Low_complexity 1 24 0 1894 139 0 21 chr12 48574856 48575171 -95211284 + AluSx SINE Alu 3 311 0 374 151 269 25 chr12 48575281 48575400 -95211055 + MER69A DNA AcHobo 26 173 -4 343 307 56 79 chr12 48575405 48575537 -95210918 + MIR SINE MIR 47 181 -81 2037 133 55 17 chr12 48575537 48575898 -95210557 + THE1C LTR MaLR 1 375 0 7072 188 35 59 chr12 48575900 48577588 -95208867 + THE1C-int LTR MaLR 3 1651 0 2110 127 50 14 chr12 48577588 48577950 -95208505 + THE1C LTR MaLR 1 375 0 343 307 56 79 chr12 48577950 48578028 -95208427 + MIR SINE MIR 180 256 -6 1459 207 97 21 chr12 48578310 48578577 -95207878 - MLT1C LTR MaLR 0 467 153 381 70 0 0 chr12 48578577 48578634 -95207821 + (TG)n Simple_repeat Simple_repeat 2 58 0 1459 207 97 21 chr12 48578634 48578800 -95207655 - MLT1C LTR MaLR -314 153 1 210 208 0 0 chr12 48579534 48579582 -95206873 + (TA)n Simple_repeat Simple_repeat 2 49 0 25 65 0 0 chr12 48579642 48579688 -95206767 + AT_rich Low_complexity Low_complexity 1 46 0 364 259 45 36 chr12 48579843 48579955 -95206500 + L2 LINE L2 3158 3270 -2 579 251 133 5 chr12 48580147 48580342 -95206113 - LTR33 LTR ERVL 0 521 302 320 322 128 16 chr12 48580715 48580973 -95205482 - L2 LINE L2 0 3313 3027 3795 322 100 44 chr12 48581226 48581360 -95205095 + L2 LINE L2 222 347 -2966 2248 50 47 27 chr12 48581360 48581661 -95204794 + AluY SINE Alu 1 307 -4 3795 322 100 44 chr12 48581661 48582435 -95204020 + L2 LINE L2 347 1076 -2237 2627 114 50 19 chr12 48582435 48582856 -95203599 + MER61C LTR ERV1 1 434 0 3795 322 100 44 chr12 48582856 48583982 -95202473 + L2 LINE L2 1076 2137 -1176 1965 151 0 0 chr12 48583982 48584292 -95202163 - AluSx SINE Alu 0 310 1 3795 322 100 44 chr12 48584292 48585145 -95201310 + L2 LINE L2 2137 3279 -34 1492 163 0 73 chr12 48585347 48585660 -95200795 + AluJb SINE Alu 1 290 -22 30 0 0 0 chr12 48585660 48585690 -95200765 + AT_rich Low_complexity Low_complexity 1 30 0 6605 70 12 3 chr12 48585755 48586834 -95199621 - L1PA7 LINE L1 -11 6143 5056 336 73 0 36 chr12 48587548 48587603 -95198852 + MADE1 DNA Mariner 1 53 -27 25 90 0 0 chr12 48587781 48587848 -95198607 + AT_rich Low_complexity Low_complexity 1 67 0 342 220 121 0 chr12 48587928 48588019 -95198436 + MIR SINE MIR 44 145 -117 296 212 172 80 chr12 48588057 48588208 -95198247 - MLT1K LTR MaLR 0 588 424 241 313 131 12 chr12 48590049 48590209 -95196246 + MIR3 SINE MIR 11 189 -19 248 260 73 57 chr12 48590222 48590345 -95196110 + MIR SINE MIR 88 212 -50 195 375 101 44 chr12 48590796 48591231 -95195224 - L2 LINE L2 0 3272 2813 1479 184 17 47 chr12 48591596 48591895 -95194560 - AluJo SINE Alu -22 290 1 387 274 147 18 chr12 48592152 48592354 -95194101 + MIR SINE MIR 1 218 -44 186 43 0 0 chr12 48593012 48593035 -95193420 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 255 173 0 0 chr12 48593318 48593370 -95193085 + (TA)n Simple_repeat Simple_repeat 2 53 0 2195 123 123 3 chr12 48593899 48594281 -95192174 - MSTA LTR MaLR 0 428 1 1472 211 28 46 chr12 48594427 48594820 -95191635 - MLT1B LTR MaLR -4 386 1 184 317 32 49 chr12 48595879 48596002 -95190453 + L2 LINE L2 2911 3031 -241 255 333 95 16 chr12 48596273 48596399 -95190056 + MIR SINE MIR 13 148 -114 21 36 0 0 chr12 48596461 48596489 -95189966 + AT_rich Low_complexity Low_complexity 1 28 0 2175 192 86 22 chr12 48598314 48598803 -95187652 + MLT2B1 LTR ERVL 1 520 0 24 0 0 0 chr12 48599521 48599545 -95186910 + AT_rich Low_complexity Low_complexity 1 24 0 265 297 0 0 chr12 48599672 48599736 -95186719 + MIR3 SINE MIR 100 163 -45 733 246 34 34 chr12 48599863 48599955 -95186500 - MIR SINE MIR -81 181 87 2464 122 6 0 chr12 48599955 48600317 -95186138 - THE1B LTR MaLR 0 364 1 733 246 34 34 chr12 48600317 48600403 -95186052 - MIR SINE MIR -174 88 3 190 250 0 21 chr12 48600412 48600460 -95185995 - MIR SINE MIR -200 62 16 586 308 72 36 chr12 48600476 48600781 -95185674 - L2 LINE L2 -2 3311 2996 25 0 0 0 chr12 48601484 48601509 -95184946 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr12 48602472 48602521 -95183934 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr12 48604494 48604523 -95181932 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr12 48605163 48605205 -95181250 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 48605340 48605361 -95181094 + AT_rich Low_complexity Low_complexity 1 21 0 1635 147 29 0 chr12 48606210 48606483 -95179972 - L1PA16 LINE L1 -9 6157 5877 4184 32 0 0 chr12 48606527 48607022 -95179433 - L1PA3 LINE L1 -3 6152 5658 5184 24 2 0 chr12 48607022 48607942 -95178513 + L1PA3 LINE L1 4769 5689 -466 200 206 15 29 chr12 48608127 48608195 -95178260 + A-rich Low_complexity Low_complexity 4 70 0 1928 177 5 45 chr12 48608391 48608769 -95177686 - MLT1A1 LTR MaLR 0 365 3 372 22 0 0 chr12 48609460 48609505 -95176950 + (TG)n Simple_repeat Simple_repeat 2 46 0 622 213 8 8 chr12 48610646 48610773 -95175682 - FLAM_C SINE Alu -5 128 2 640 279 28 126 chr12 48611155 48611553 -95174902 - L2 LINE L2 -5 3267 2909 712 305 104 59 chr12 48611911 48612403 -95174052 - REP3 LTR ERV -47 515 2 248 343 10 30 chr12 48612740 48612839 -95173616 - L2 LINE L2 -184 3088 2992 34 42 0 0 chr12 48613006 48613054 -95173401 + AT_rich Low_complexity Low_complexity 1 48 0 688 267 122 39 chr12 48613189 48613803 -95172652 + L1ME3A LINE L1 4624 5288 -858 1285 216 114 23 chr12 48613806 48614157 -95172298 + MLT1B LTR MaLR 8 390 0 326 248 76 0 chr12 48614157 48614262 -95172193 + L1ME3A LINE L1 5280 5392 -770 257 257 9 57 chr12 48614272 48614377 -95172078 - LTR33A LTR ERVL -8 515 416 1353 273 66 22 chr12 48614680 48615258 -95171197 + L1ME3A LINE L1 5385 5987 -183 438 313 117 13 chr12 48616073 48616303 -95170152 + HAL1b LINE L1 357 610 -738 1970 214 112 45 chr12 48616551 48617130 -95169325 + MLT1E3 LTR MaLR 1 618 -6 1343 270 128 54 chr12 48617276 48617519 -95168936 - L2 LINE L2 -12 3301 3078 4141 125 14 33 chr12 48617519 48618256 -95168199 + L1MA4A LINE L1 5574 6296 -7 1343 270 128 54 chr12 48618256 48618948 -95167507 - L2 LINE L2 -235 3078 2310 294 169 0 0 chr12 48618991 48619056 -95167399 + A-rich Low_complexity Low_complexity 1 65 0 593 262 81 44 chr12 48619080 48619561 -95166894 + HAL1b LINE L1 822 1320 -28 646 201 98 11 chr12 48620055 48620229 -95166226 - MER3 DNA MER1_type -20 189 1 882 145 0 0 chr12 48620510 48620641 -95165814 + AluSg/x SINE Alu 168 298 -12 216 0 0 0 chr12 48622487 48622511 -95163944 + (T)n Simple_repeat Simple_repeat 1 24 0 691 198 143 56 chr12 48622816 48623208 -95163247 - HsTC2 DNA Tc2 -7 1891 1278 * 745 295 48 46 chr12 48623204 48623577 -95162878 - HsTC2 DNA Tc2 -1522 376 3 282 233 35 23 chr12 48623654 48623740 -95162715 - MIR SINE MIR -21 241 155 1309 168 148 16 chr12 48623768 48624072 -95162383 + MER2 DNA MER2_type 1 344 0 439 284 54 29 chr12 48624340 48624544 -95161911 - MER102a DNA MER1_type -15 315 107 180 0 0 0 chr12 48624580 48624600 -95161855 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 230 242 48 32 chr12 48624675 48624737 -95161718 + MLT1J LTR MaLR 62 124 -387 306 313 8 39 chr12 48624891 48625019 -95161436 + MLT1J LTR MaLR 343 466 -45 1542 232 62 47 chr12 48625464 48625731 -95160724 + L1M4 LINE L1 2217 2478 -3668 333 0 0 0 chr12 48625731 48625768 -95160687 + (CA)n Simple_repeat Simple_repeat 2 38 0 1542 232 62 47 chr12 48625768 48626098 -95160357 + L1M4 LINE L1 2478 2823 -3323 268 150 0 0 chr12 48626116 48626156 -95160299 + tRNA-Thr-ACT tRNA tRNA 1 40 -37 410 100 17 0 chr12 48626170 48626230 -95160225 + L1PA10 LINE L1 5885 5945 -223 357 240 110 14 chr12 48626232 48626378 -95160077 + L1M4 LINE L1 2846 3005 -3141 22 56 0 0 chr12 48626381 48626417 -95160038 + AT_rich Low_complexity Low_complexity 1 36 0 4897 111 14 25 chr12 48626421 48627152 -95159303 - L1PA11 LINE L1 -5 6169 5445 2294 103 0 0 chr12 48627152 48627454 -95159001 - AluSg SINE Alu -5 305 4 4897 111 14 25 chr12 48627454 48627489 -95158966 - L1PA11 LINE L1 -729 5445 5411 723 210 217 29 chr12 48627595 48627867 -95158588 + L1M4 LINE L1 3579 3901 -2245 1330 226 110 30 chr12 48627880 48628317 -95158138 - L1MC4 LINE L1 -914 7128 6657 257 253 110 14 chr12 48628365 48628511 -95157944 - L1MC4 LINE L1 -1365 6677 6518 1315 262 97 24 chr12 48630745 48631210 -95155245 + MLT1D LTR MaLR 7 505 0 6641 30 0 2 chr12 48631544 48632330 -95154125 + L1PA3 LINE L1 5369 6152 -3 23 0 0 0 chr12 48632330 48632353 -95154102 + AT_rich Low_complexity Low_complexity 1 23 0 225 204 0 0 chr12 48632993 48633037 -95153418 + A-rich Low_complexity Low_complexity 1 44 0 920 176 6 6 chr12 48633055 48633214 -95153241 + FRAM SINE Alu 1 159 -17 27 29 0 0 chr12 48635075 48635109 -95151346 + AT_rich Low_complexity Low_complexity 1 34 0 35 0 0 0 chr12 48635664 48635699 -95150756 + AT_rich Low_complexity Low_complexity 1 35 0 218 360 40 45 chr12 48635734 48635956 -95150499 + L2 LINE L2 2845 3065 -207 1446 240 78 57 chr12 48636193 48636415 -95150040 - L1ME3A LINE L1 0 6170 5954 558 108 11 0 chr12 48636415 48636508 -95149947 - L1MA4 LINE L1 -6 6294 6201 1446 240 78 57 chr12 48636508 48636666 -95149789 - L1ME3A LINE L1 -216 5954 5801 2159 159 127 38 chr12 48636666 48637139 -95149316 + MLT2B2 LTR ERVL 1 515 0 1446 240 78 57 chr12 48637139 48637306 -95149149 - L1ME3A LINE L1 -369 5801 5610 2165 153 11 3 chr12 48637306 48637658 -95148797 - THE1B LTR MaLR 0 364 10 41994 39 23 2 chr12 48637658 48643707 -95142748 + L1PA3 LINE L1 15 6191 0 229 121 0 0 chr12 48643709 48643742 -95142713 - THE1C LTR MaLR -342 33 1 10199 122 16 26 chr12 48643742 48645338 -95141117 - THE1B-int LTR MaLR 0 1580 2 2478 129 3 3 chr12 48645339 48645703 -95140752 - THE1B LTR MaLR 0 364 1 279 207 165 33 chr12 48645750 48645871 -95140584 + L1ME LINE L1 5336 5472 -692 24 0 0 0 chr12 48646298 48646322 -95140133 + AT_rich Low_complexity Low_complexity 1 24 0 199 123 53 0 chr12 48646447 48646504 -95139951 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 835 270 108 3 chr12 48647230 48647526 -95138929 + HsTC2 DNA Tc2 1 327 -1571 2123 224 89 29 chr12 48647628 48648147 -95138308 - MLT1F1 LTR MaLR -5 562 13 1010 239 158 10 chr12 48648163 48648569 -95137886 + HsTC2 DNA Tc2 1240 1881 -17 620 301 151 23 chr12 48648598 48649036 -95137419 + MLT1H LTR MaLR 23 516 -33 860 52 0 9 chr12 48649374 48649489 -95136966 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 2018 136 3 16 chr12 48649505 48649821 -95136634 - AluSx SINE Alu 0 312 1 393 265 197 64 chr12 48649969 48650233 -95136222 + MLT1K LTR MaLR 282 580 -8 385 302 48 0 chr12 48650245 48650371 -95136084 - MIR SINE MIR -111 151 20 813 220 169 15 chr12 48650401 48650674 -95135781 - L1ME1 LINE L1 -17 6149 5835 1630 215 58 10 chr12 48650810 48651206 -95135249 + MLT1C LTR MaLR 53 467 0 350 279 18 45 chr12 48651951 48652062 -95134393 - MER5B DNA MER1_type -69 109 2 225 65 0 0 chr12 48654041 48654072 -95132383 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1393 24 0 0 chr12 48655541 48655706 -95130749 + L1PA4 LINE L1 5988 6152 -3 22 0 0 0 chr12 48656124 48656146 -95130309 + AT_rich Low_complexity Low_complexity 1 22 0 924 174 0 13 chr12 48656146 48656301 -95130154 - FRAM SINE Alu -24 152 1 390 290 74 25 chr12 48656880 48657042 -95129413 - MIR SINE MIR -84 178 9 2389 4 4 0 chr12 48657367 48657639 -95128816 - L1PA2 LINE L1 -2 6153 5881 21 36 0 0 chr12 48658934 48658962 -95127493 + AT_rich Low_complexity Low_complexity 1 28 0 334 242 81 0 chr12 48659286 48659385 -95127070 + LTR65 LTR ERV1 31 137 -532 317 264 72 36 chr12 48659519 48659734 -95126721 + LTR65 LTR ERV1 342 654 -14 2315 85 0 3 chr12 48659790 48660097 -95126358 + AluY SINE Alu 1 306 -5 5593 161 51 2 chr12 48660097 48662020 -95124435 + L1PA13 LINE L1 4239 6162 -1 2297 88 3 13 chr12 48662643 48662950 -95123505 + AluY SINE Alu 1 304 -7 24 0 0 0 chr12 48664011 48664035 -95122420 + AT_rich Low_complexity Low_complexity 1 24 0 231 288 25 25 chr12 48664644 48664724 -95121731 - L2 LINE L2 -9 3304 3225 248 346 7 44 chr12 48664918 48665054 -95121401 - MIR SINE MIR -112 150 20 379 268 103 62 chr12 48666085 48666216 -95120239 - MIR SINE MIR -1 261 116 1559 152 28 10 chr12 48666216 48666506 -95119949 + AluJb SINE Alu 1 295 -17 379 268 103 62 chr12 48666506 48666598 -95119857 - MIR SINE MIR -146 116 29 317 281 329 12 chr12 48666623 48666787 -95119668 + MIR SINE MIR 13 228 -34 328 335 97 7 chr12 48667571 48667726 -95118729 - MIR SINE MIR -56 206 38 21 36 0 0 chr12 48668594 48668622 -95117833 + AT_rich Low_complexity Low_complexity 1 28 0 270 103 0 0 chr12 48668710 48668749 -95117706 + tRNA-Gln-CAG tRNA tRNA 1 39 -36 255 277 84 24 chr12 48669752 48669835 -95116620 - MER5A DNA MER1_type -92 97 10 2151 85 4 0 chr12 48670792 48671100 -95115355 - AluY SINE Alu 0 309 1 859 210 113 107 chr12 48671165 48671623 -95114832 + MLT1C LTR MaLR 6 466 -1 493 323 59 5 chr12 48674751 48674971 -95111484 + L1ME LINE L1 5476 5707 -414 318 205 98 27 chr12 48675517 48675629 -95110826 + L1MCc LINE L1 19 138 -6285 618 316 7 29 chr12 48675635 48675907 -95110548 + L1MCc LINE L1 199 464 -5959 846 285 107 53 chr12 48676070 48676770 -95109685 + L1MCc LINE L1 974 1635 -5487 228 35 0 0 chr12 48676770 48676799 -95109656 + (CA)n Simple_repeat Simple_repeat 1 29 0 846 285 107 53 chr12 48676799 48677364 -95109091 + L1MCc LINE L1 1635 2545 -4577 500 263 56 56 chr12 48677430 48677696 -95108759 + L1MEc LINE L1 1555 1820 -4576 209 222 16 0 chr12 48677760 48677823 -95108632 + (TA)n Simple_repeat Simple_repeat 1 64 0 2219 191 47 0 chr12 48677933 48678342 -95108113 + MSTB1 LTR MaLR 5 432 0 24 0 0 0 chr12 48678517 48678541 -95107914 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr12 48678626 48678674 -95107781 + AT_rich Low_complexity Low_complexity 1 48 0 306 179 0 24 chr12 48678714 48678837 -95107618 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 302 321 65 33 chr12 48678880 48679064 -95107391 + L1MEc LINE L1 1886 2075 -4321 351 96 0 0 chr12 48679127 48679179 -95107276 + (CA)n Simple_repeat Simple_repeat 2 53 0 756 252 46 8 chr12 48679188 48679528 -95106927 + L1MEc LINE L1 2107 2417 -3798 1915 53 4 0 chr12 48679545 48679788 -95106667 - L1PA5 LINE L1 -1 6153 5910 688 233 86 45 chr12 48679794 48680039 -95106416 + L2 LINE L2 3057 3311 -2 416 246 100 18 chr12 48680013 48680123 -95106332 - L2 LINE L2 -8 3305 3187 * 22 35 0 0 chr12 48680693 48680722 -95105733 + AT_rich Low_complexity Low_complexity 1 29 0 216 270 30 60 chr12 48682451 48682551 -95103904 + L2 LINE L2 3176 3272 0 21 0 0 0 chr12 48682866 48682887 -95103568 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 48684575 48684603 -95101852 + AT_rich Low_complexity Low_complexity 1 28 0 204 309 0 0 chr12 48685575 48685630 -95100825 + L2 LINE L2 2587 2641 -673 282 328 120 46 chr12 48685753 48685994 -95100461 - L3b LINE CR1 -97 1486 1228 977 313 35 18 chr12 48686306 48686760 -95099695 + LTR16B LTR ERVL 3 464 0 23 33 0 0 chr12 48687039 48687069 -95099386 + AT_rich Low_complexity Low_complexity 1 30 0 277 308 111 65 chr12 48688480 48688759 -95097696 + L2 LINE L2 2665 2956 -358 198 91 61 0 chr12 48689199 48689232 -95097223 + MIR SINE MIR 74 108 -154 1537 186 10 10 chr12 48689904 48690194 -95096261 + AluJb SINE Alu 3 292 -20 373 311 23 30 chr12 48690369 48690501 -95095954 - MIR SINE MIR -112 150 20 180 322 0 0 chr12 48690942 48691001 -95095454 + MER5B DNA MER1_type 3 61 -117 * 328 248 53 35 chr12 48690976 48691089 -95095366 - MER5A DNA MER1_type -63 126 12 1080 283 137 4 chr12 48693804 48694263 -95092192 - L2 LINE L2 -1019 2295 1776 1031 184 22 0 chr12 48694559 48694744 -95091711 + MER5A DNA MER1_type 1 189 0 425 255 0 51 chr12 48695841 48695998 -95090457 + GA-rich Low_complexity Low_complexity 4 152 0 2234 148 19 6 chr12 48696475 48696834 -95089621 - THE1B LTR MaLR 0 364 1 308 329 32 60 chr12 48696834 48697086 -95089369 - L2 LINE L2 -559 2755 2511 389 287 132 12 chr12 48697099 48697266 -95089189 + MER5A DNA MER1_type 1 187 -2 235 280 168 21 chr12 48697627 48697770 -95088685 - L2 LINE L2 -1251 2063 1900 193 370 62 39 chr12 48697802 48698107 -95088348 - L2 LINE L2 -1645 1669 1358 269 360 108 10 chr12 48699362 48699565 -95086890 - MIR SINE MIR -38 224 2 326 292 40 0 chr12 48701396 48701520 -95084935 - MIR SINE MIR -65 143 51 1576 278 118 73 chr12 48701864 48702753 -95083702 + L2 LINE L2 2178 3137 -176 468 0 0 0 chr12 48702753 48702805 -95083650 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1576 278 118 73 chr12 48702805 48702991 -95083464 + L2 LINE L2 3137 3313 0 540 111 0 0 chr12 48703095 48703176 -95083279 + (TA)n Simple_repeat Simple_repeat 2 82 0 236 318 0 0 chr12 48703351 48703439 -95083016 + L1MC4 LINE L1 6615 6702 -1340 273 381 111 14 chr12 48704991 48705280 -95081175 + L2 LINE L2 2009 2325 -989 39 22 0 0 chr12 48705761 48705807 -95080648 + AT_rich Low_complexity Low_complexity 1 46 0 664 215 20 27 chr12 48705816 48705965 -95080490 - MER106B DNA MER1_type -911 148 1 2329 97 0 0 chr12 48705987 48706286 -95080169 - AluSc SINE Alu -10 299 1 274 317 50 37 chr12 48707864 48708025 -95078430 - L3 LINE CR1 -51 1526 1364 404 346 74 0 chr12 48708896 48709058 -95077397 + MIR3 SINE MIR 32 205 -3 21 0 0 0 chr12 48709133 48709154 -95077301 + AT_rich Low_complexity Low_complexity 1 21 0 252 357 44 32 chr12 48710524 48710773 -95075682 + L2 LINE L2 2839 3090 -182 534 291 51 10 chr12 48711494 48711690 -95074765 + MIR SINE MIR 53 256 -6 22 0 0 0 chr12 48711936 48711958 -95074497 + AT_rich Low_complexity Low_complexity 1 22 0 319 298 8 23 chr12 48713179 48713310 -95073145 + L1M4 LINE L1 5067 5195 -951 22 35 0 0 chr12 48714889 48714918 -95071537 + AT_rich Low_complexity Low_complexity 1 29 0 253 281 50 66 chr12 48717186 48717307 -95069148 + MLT1L LTR MaLR 253 371 -244 456 301 51 6 chr12 48717308 48717484 -95068971 - L2 LINE L2 -1347 1967 1784 1561 75 0 80 chr12 48717494 48717597 -95068858 + THE1A LTR MaLR 136 212 -143 2366 57 0 0 chr12 48717597 48717900 -95068555 + AluY SINE Alu 1 303 0 1561 75 0 80 chr12 48717900 48718034 -95068421 + THE1A LTR MaLR 212 355 0 527 284 135 44 chr12 48718147 48718376 -95068079 - MIR SINE MIR -11 251 2 25 31 0 0 chr12 48719129 48719161 -95067294 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr12 48719192 48719240 -95067215 + AT_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr12 48719387 48719410 -95067045 + AT_rich Low_complexity Low_complexity 1 23 0 1377 231 95 5 chr12 48719885 48720284 -95066171 - MER63B DNA MER1_type 0 436 2 210 191 0 0 chr12 48720658 48720700 -95065755 + G-rich Low_complexity Low_complexity 4 45 0 25 51 0 0 chr12 48721155 48721194 -95065261 + AT_rich Low_complexity Low_complexity 1 39 0 358 214 29 29 chr12 48721266 48721369 -95065086 - MER69 DNA AcHobo 0 2526 2424 679 253 0 7 chr12 48721385 48721535 -95064920 - MER69 DNA AcHobo -1077 149 1 2158 97 7 13 chr12 48721998 48722306 -95064149 + AluSq SINE Alu 1 306 -7 28 0 0 0 chr12 48722791 48722819 -95063636 + AT_rich Low_complexity Low_complexity 1 28 0 2403 48 14 0 chr12 48722882 48723173 -95063282 - AluY SINE Alu -16 295 1 207 88 0 0 chr12 48723517 48723551 -95062904 + (TTTTTA)n Simple_repeat Simple_repeat 5 38 0 237 200 0 0 chr12 48723578 48723613 -95062842 + Alu SINE Alu 243 277 -25 389 336 60 7 chr12 48724075 48724224 -95062231 + MIR SINE MIR 55 211 -51 334 271 161 0 chr12 48724246 48724364 -95062091 + L2 LINE L2 3175 3311 -2 2065 137 13 3 chr12 48724439 48724746 -95061709 + AluSx SINE Alu 3 312 0 413 155 26 35 chr12 48724746 48724850 -95061605 + GA-rich Low_complexity Low_complexity 2 106 -10 2389 75 3 0 chr12 48724850 48725158 -95061297 + AluY SINE Alu 1 309 -2 413 155 26 35 chr12 48725158 48725169 -95061286 + GA-rich Low_complexity Low_complexity 106 116 0 211 258 45 0 chr12 48726178 48726244 -95060211 + CT-rich Low_complexity Low_complexity 5 73 0 21 0 0 0 chr12 48726662 48726683 -95059772 + AT_rich Low_complexity Low_complexity 1 21 0 394 354 66 22 chr12 48727649 48727830 -95058625 - MER5A DNA MER1_type 0 189 1 215 314 71 0 chr12 48727964 48728034 -95058421 + MIR SINE MIR 50 124 -138 258 359 157 6 chr12 48729321 48729480 -95056975 + MER5A DNA MER1_type 1 183 -6 27 0 0 0 chr12 48730818 48730845 -95055610 + AT_rich Low_complexity Low_complexity 1 27 0 186 375 54 27 chr12 48730941 48731053 -95055402 + L2 LINE L2 3150 3264 -8 185 222 0 0 chr12 48731705 48731741 -95054714 - L2 LINE L2 -6 3266 3231 314 273 15 0 chr12 48732027 48732093 -95054362 - L2 LINE L2 -2 3311 3245 345 208 94 10 chr12 48732155 48732251 -95054204 - MIR SINE MIR -35 227 124 2513 32 0 29 chr12 48733101 48733411 -95053044 + AluY SINE Alu 1 301 -10 1831 162 117 43 chr12 48733451 48733846 -95052609 + MSTC LTR MaLR 1 424 -4 1127 190 50 0 chr12 48734617 48734838 -95051617 - L1MC2 LINE L1 -25 6319 6088 654 283 54 39 chr12 48735115 48735394 -95051061 - L2 LINE L2 -830 2484 2202 23 54 0 0 chr12 48736134 48736171 -95050284 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 48736673 48736696 -95049759 + AT_rich Low_complexity Low_complexity 1 23 0 5548 185 31 42 chr12 48737158 48738984 -95047471 + L1MC1 LINE L1 4531 6333 0 317 295 193 6 chr12 48739188 48739354 -95047101 - MIR SINE MIR -3 259 63 206 339 0 0 chr12 48739600 48739659 -95046796 + L2 LINE L2 3206 3264 -8 7305 33 0 0 chr12 48740990 48741859 -95044596 - L1PA4 LINE L1 -1 6154 5286 7241 30 0 0 chr12 48741859 48742723 -95043732 + L1PA4 LINE L1 4414 5277 -869 776 245 94 25 chr12 48743485 48743730 -95042725 - MIR SINE MIR 0 262 1 577 256 108 44 chr12 48743826 48744029 -95042426 - MIR SINE MIR -1 261 46 301 323 43 30 chr12 48744095 48744259 -95042196 + L1MC/D LINE L1 4904 5069 -1077 427 361 14 9 chr12 48744525 48744741 -95041714 + L1MC/D LINE L1 5461 5677 -444 342 290 45 40 chr12 48744897 48745073 -95041382 + L1MEc LINE L1 2144 2320 -4076 301 237 137 22 chr12 48745091 48745230 -95041225 + L1ME4a LINE L1 5954 6108 -13 326 293 102 48 chr12 48745959 48746106 -95040349 - MER5B DNA MER1_type -6 172 18 392 299 0 0 chr12 48747600 48747707 -95038748 + MER119 DNA MER1_type 477 583 0 522 319 135 30 chr12 48748172 48748542 -95037913 + MLT1K LTR MaLR 180 588 0 23 33 0 0 chr12 48749025 48749055 -95037400 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr12 48749953 48749990 -95036465 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr12 48750149 48750180 -95036275 + AT_rich Low_complexity Low_complexity 1 31 0 2332 91 7 0 chr12 48750868 48751175 -95035280 + AluSp SINE Alu 1 309 -4 422 314 25 36 chr12 48753228 48753508 -95032947 + L1PB1 LINE L1 5587 5863 -288 * 1443 171 14 17 chr12 48753260 48753552 -95032903 + L1MD1 LINE L1 5616 5906 -336 239 127 18 91 chr12 48753606 48753661 -95032794 - L1MD1 LINE L1 -427 5932 5882 1494 162 74 0 chr12 48753678 48753974 -95032481 + L1MD1 LINE L1 5924 6241 -1 449 285 23 31 chr12 48753979 48754109 -95032346 - MER5B DNA MER1_type -46 132 4 385 268 202 9 chr12 48754145 48754358 -95032097 + MIR SINE MIR 9 262 0 286 263 0 20 chr12 48754377 48754476 -95031979 + L1MC/D LINE L1 5700 5796 -2012 756 263 42 24 chr12 48754865 48755078 -95031377 - MIR SINE MIR 0 262 46 222 240 0 20 chr12 48755071 48755121 -95031334 + L2 LINE L2 3247 3295 -18 * 496 310 26 18 chr12 48756208 48756421 -95030034 + MIR SINE MIR 4 221 -41 2131 110 37 0 chr12 48756421 48756720 -95029735 + AluSg SINE Alu 1 310 0 496 310 26 18 chr12 48756720 48756732 -95029723 + MIR SINE MIR 221 231 -31 444 19 0 0 chr12 48757019 48757072 -95029383 + (CA)n Simple_repeat Simple_repeat 2 54 0 443 304 69 17 chr12 48757660 48757939 -95028516 + L2 LINE L2 2402 2749 -565 252 0 0 0 chr12 48758066 48758094 -95028361 + (T)n Simple_repeat Simple_repeat 1 28 0 224 216 0 0 chr12 48758492 48758543 -95027912 + (TG)n Simple_repeat Simple_repeat 2 52 0 2241 129 36 14 chr12 48759043 48759399 -95027056 - THE1B LTR MaLR 0 364 1 1703 160 14 10 chr12 48759713 48760006 -95026449 + AluJo SINE Alu 3 296 -16 23 68 0 0 chr12 48760192 48760236 -95026219 + AT_rich Low_complexity Low_complexity 1 44 0 261 0 0 0 chr12 48761371 48761400 -95025055 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1278 154 85 0 chr12 48761645 48761904 -95024551 - L1MA8 LINE L1 -4 6287 6007 629 197 0 8 chr12 48762227 48762349 -95024106 + MLT1J2 LTR MaLR 61 181 -269 487 240 27 66 chr12 48762358 48762541 -95023914 + L1MB7 LINE L1 1246 1421 -5438 * 6563 204 34 15 chr12 48762537 48764943 -95021512 + L1MB7 LINE L1 4531 6986 -9 2198 86 20 10 chr12 48764963 48765266 -95021189 + AluSq SINE Alu 3 308 -5 322 171 13 13 chr12 48765294 48765370 -95021085 + GA-rich Low_complexity Low_complexity 3 78 0 1931 176 37 0 chr12 48765418 48765742 -95020713 - MER1B DNA MER1_type 0 337 2 24 0 0 0 chr12 48766323 48766347 -95020108 + AT_rich Low_complexity Low_complexity 1 24 0 653 311 49 0 chr12 48766630 48766894 -95019561 + L1MCc LINE L1 19 295 -6128 363 193 0 0 chr12 48766900 48766957 -95019498 + Charlie3 DNA MER1_type 20 76 -2634 308 259 37 0 chr12 48766960 48767041 -95019414 + L1MCc LINE L1 2466 2549 -4573 252 0 0 0 chr12 48767044 48767072 -95019383 + (TG)n Simple_repeat Simple_repeat 2 29 0 904 172 71 92 chr12 48767077 48767315 -95019140 - AluJo SINE Alu -30 282 50 788 220 62 21 chr12 48767315 48767556 -95018899 + L1MCc LINE L1 2552 2802 -4320 2602 224 97 22 chr12 48768239 48768919 -95017536 + MER21B LTR ERV1 10 740 -123 21 36 0 0 chr12 48769323 48769351 -95017104 + AT_rich Low_complexity Low_complexity 1 28 0 517 176 115 54 chr12 48769550 48769698 -95016757 + MLT1E1 LTR MaLR 1 157 -497 921 112 31 87 chr12 48769788 48769984 -95016471 - L1MC2 LINE L1 -24 6320 6136 316 233 8 124 chr12 48769995 48770124 -95016331 - L1MEd LINE L1 -4958 1161 1048 3741 128 30 30 chr12 48770132 48770843 -95015612 - L1PA10 LINE L1 -3 6165 5455 1619 60 82 9 chr12 48770943 48771175 -95015280 - L1P4 LINE L1 -546 5622 5374 1561 194 104 72 chr12 48771180 48771650 -95014805 + MLT1E1 LTR MaLR 168 652 -2 407 254 92 7 chr12 48772430 48772572 -95013883 - Charlie2 DNA MER1_type 0 2862 2709 267 323 164 15 chr12 48772983 48773178 -95013277 + L2 LINE L2 1132 1355 -1959 641 310 131 0 chr12 48773301 48773591 -95012864 + Charlie2 DNA MER1_type 2 329 -2453 358 171 360 9 chr12 48773604 48773715 -95012740 + Charlie2 DNA MER1_type 1855 2004 -858 1476 261 87 14 chr12 48773722 48774389 -95012066 + Charlie2 DNA MER1_type 2146 2861 -1 387 363 23 6 chr12 48774392 48774563 -95011892 + L2 LINE L2 2585 2758 -556 190 358 63 39 chr12 48774645 48774852 -95011603 + L2 LINE L2 2872 3083 -189 306 365 0 61 chr12 48775358 48775473 -95010982 + L2 LINE L2 3134 3241 -31 257 337 11 0 chr12 48775910 48776002 -95010453 + L2 LINE L2 3180 3272 0 213 192 55 110 chr12 48777199 48777272 -95009183 + MIR SINE MIR 106 174 -88 3739 151 10 5 chr12 48777321 48777937 -95008518 + LTR31 LTR ERV1 1 619 0 305 292 89 3 chr12 48780377 48780496 -95005959 - MIR SINE MIR -55 153 25 1995 133 27 27 chr12 48781428 48781765 -95004690 + MER1B DNA MER1_type 1 337 0 26 0 0 0 chr12 48832155 48832181 -94954274 + AT_rich Low_complexity Low_complexity 1 26 0 792 225 46 8 chr12 48832362 48832602 -94953853 + L1MA6 LINE L1 6052 6300 0 524 283 25 40 chr12 48834106 48834304 -94952151 + L2 LINE L2 3118 3312 -1 28 61 0 0 chr12 48835155 48835204 -94951251 + AT_rich Low_complexity Low_complexity 1 49 0 1164 147 23 68 chr12 48836714 48837021 -94949434 - LTR17 LTR ERV1 -487 293 1 956 97 0 8 chr12 48837021 48837155 -94949300 + THE1C LTR MaLR 243 375 0 218 300 43 0 chr12 48837163 48837233 -94949222 + L2 LINE L2 2934 3006 -307 4455 91 19 34 chr12 48837286 48837531 -94948924 - PABL_A LTR ERV1 -1 659 412 2288 107 0 0 chr12 48837531 48837831 -94948624 - AluY SINE Alu -11 300 1 4455 91 19 34 chr12 48837831 48838254 -94948201 - PABL_A LTR ERV1 -248 412 1 730 286 82 43 chr12 48838516 48838845 -94947610 + L2 LINE L2 2970 3311 -2 2040 114 0 13 chr12 48838888 48839186 -94947269 + AluSg SINE Alu 1 294 -16 802 163 29 38 chr12 48839186 48839395 -94947060 + L1M4 LINE L1 4985 5191 -955 1746 212 87 18 chr12 48839963 48840563 -94945892 + MER67C LTR ERV1 1 710 0 201 275 11 33 chr12 48840866 48840957 -94945498 + CT-rich Low_complexity Low_complexity 4 92 0 23 0 0 0 chr12 48840985 48841008 -94945447 + AT_rich Low_complexity Low_complexity 1 23 0 419 342 79 31 chr12 48841104 48841458 -94944997 + MER115 DNA AcHobo 2 372 -321 526 259 79 5 chr12 48841515 48841704 -94944751 + MER115 DNA AcHobo 466 668 -25 216 311 0 0 chr12 48841724 48841785 -94944670 + MIR SINE MIR 86 146 -116 354 281 59 37 chr12 48842278 48842413 -94944042 - MIR SINE MIR -51 211 74 1981 113 3 3 chr12 48842927 48843236 -94943219 - AluSc SINE Alu 0 309 1 381 302 8 48 chr12 48844442 48844568 -94941887 - MIR3 SINE MIR -85 123 3 24 67 0 0 chr12 48845837 48845882 -94940573 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 48845969 48845990 -94940465 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 48846252 48846283 -94940172 + AT_rich Low_complexity Low_complexity 1 31 0 216 266 142 18 chr12 48846392 48846505 -94939950 - MIR SINE MIR -14 248 122 959 75 100 6 chr12 48846891 48847051 -94939404 + L1MA4A LINE L1 6125 6299 -4 205 417 92 0 chr12 48847490 48847610 -94938845 - L2 LINE L2 0 3272 3142 1104 157 37 46 chr12 48847794 48848010 -94938445 + MER67D LTR ERV1 1 214 -300 2141 108 24 3 chr12 48848020 48848315 -94938140 + AluSx SINE Alu 1 301 -11 376 321 15 15 chr12 48849759 48849890 -94936565 - L2 LINE L2 -1 3271 3141 495 65 0 39 chr12 48850923 48851000 -94935455 - L1PA6 LINE L1 0 6154 6081 200 323 31 21 chr12 48851051 48851147 -94935308 - MIR3 SINE MIR -27 181 85 1212 261 15 9 chr12 48852791 48853120 -94933335 - LTR43 LTR ERV1 -144 458 128 561 251 217 0 chr12 48853473 48853736 -94932719 - MER5C DNA MER1_type -4 320 1 188 304 62 56 chr12 48854122 48854283 -94932172 - L2 LINE L2 -525 2789 2628 643 220 73 6 chr12 48854285 48854462 -94931993 - MER5A DNA MER1_type 0 189 1 4736 99 40 3 chr12 48855853 48856562 -94929893 + L1MA1 LINE L1 5558 6292 -10 37 0 0 0 chr12 48856568 48856605 -94929850 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr12 48857216 48857249 -94929206 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr12 48857488 48857514 -94928941 + AT_rich Low_complexity Low_complexity 1 26 0 292 305 116 0 chr12 48857580 48857675 -94928780 + L2 LINE L2 3157 3262 -10 614 283 158 47 chr12 48857893 48858299 -94928156 + L2 LINE L2 2863 3313 0 417 320 14 41 chr12 48858320 48858467 -94927988 - MIR3 SINE MIR -63 145 3 298 288 147 23 chr12 48860100 48860277 -94926178 - MIR SINE MIR -14 248 50 437 298 56 33 chr12 48860690 48860899 -94925556 + MIR SINE MIR 30 242 -20 253 313 72 60 chr12 48862891 48863057 -94923398 + MIR SINE MIR 84 251 -11 189 0 0 0 chr12 48863501 48863522 -94922933 + (TA)n Simple_repeat Simple_repeat 1 21 0 25 31 0 0 chr12 48864126 48864158 -94922297 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 48866153 48866188 -94920267 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 48866267 48866288 -94920167 + AT_rich Low_complexity Low_complexity 1 21 0 256 206 0 95 chr12 48866751 48866814 -94919641 + FRAM SINE Alu 58 114 -52 1070 213 9 0 chr12 48866814 48867025 -94919430 + AluJo SINE Alu 85 297 -15 1167 49 18 0 chr12 48867051 48867214 -94919241 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 25 65 0 0 chr12 48867370 48867416 -94919039 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr12 48867498 48867519 -94918936 + AT_rich Low_complexity Low_complexity 1 21 0 1683 116 0 17 chr12 48867844 48868077 -94918378 + AluSq SINE Alu 1 229 -84 241 177 48 0 chr12 48869067 48869129 -94917326 + (TA)n Simple_repeat Simple_repeat 2 66 0 209 159 23 0 chr12 48871801 48871845 -94914610 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr12 48872752 48872773 -94913682 + AT_rich Low_complexity Low_complexity 1 21 0 485 282 170 5 chr12 48873228 48873434 -94913021 + MIR SINE MIR 23 262 0 427 321 22 8 chr12 48873526 48873660 -94912795 - MIR SINE MIR -98 164 29 2203 92 0 0 chr12 48874142 48874470 -94911985 + AluY SINE Alu 1 328 0 252 59 0 0 chr12 48877480 48877514 -94908941 + (CA)n Simple_repeat Simple_repeat 1 34 0 515 210 0 33 chr12 48880047 48880228 -94906227 + GA-rich Low_complexity Low_complexity 3 177 0 209 293 0 9 chr12 48880255 48880371 -94906084 + GA-rich Low_complexity Low_complexity 3 117 0 21 0 0 0 chr12 48882075 48882096 -94904359 + AT_rich Low_complexity Low_complexity 1 21 0 243 220 17 17 chr12 48884983 48885042 -94901413 + GA-rich Low_complexity Low_complexity 3 61 0 180 0 0 0 chr12 48886785 48886805 -94899650 + (A)n Simple_repeat Simple_repeat 1 20 0 536 204 0 33 chr12 48887046 48887227 -94899228 + GA-rich Low_complexity Low_complexity 3 177 0 209 293 0 9 chr12 48887254 48887370 -94899085 + GA-rich Low_complexity Low_complexity 3 117 0 318 87 0 0 chr12 48889933 48889979 -94896476 + (A)n Simple_repeat Simple_repeat 1 46 0 21 82 0 0 chr12 48890455 48890504 -94895951 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr12 48891860 48891881 -94894574 + (T)n Simple_repeat Simple_repeat 1 21 0 194 218 0 18 chr12 48891963 48892018 -94894437 + GA-rich Low_complexity Low_complexity 2 55 0 191 170 21 0 chr12 48893615 48893662 -94892793 + (TA)n Simple_repeat Simple_repeat 1 48 0 339 25 0 0 chr12 48894196 48894236 -94892219 + (TA)n Simple_repeat Simple_repeat 2 41 0 1796 129 0 0 chr12 48895115 48895363 -94891092 - AluSx SINE Alu -64 248 1 216 320 188 6 chr12 48895383 48895564 -94890891 - MIR SINE MIR -11 251 38 180 111 0 0 chr12 48895564 48895591 -94890864 + (TAA)n Simple_repeat Simple_repeat 2 28 0 793 282 60 5 chr12 48895612 48895828 -94890627 - MIR SINE MIR -26 236 9 905 201 70 4 chr12 48898182 48898411 -94888044 + MER58B DNA MER1_type 74 317 -24 1190 201 8 38 chr12 48898708 48898971 -94887484 - MLT1B LTR MaLR -4 386 132 330 230 41 94 chr12 48899324 48899487 -94886968 + MLT1H LTR MaLR 421 549 0 197 122 49 0 chr12 48899849 48899890 -94886565 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 201 119 48 0 chr12 48900034 48900076 -94886379 + (TA)n Simple_repeat Simple_repeat 1 44 0 406 348 59 31 chr12 48901953 48902275 -94884180 + L2 LINE L2 2914 3244 -28 326 195 12 0 chr12 48902320 48902402 -94884053 + (TGGA)n Simple_repeat Simple_repeat 2 84 0 546 79 0 0 chr12 48902423 48902499 -94883956 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 459 189 24 0 chr12 48902526 48902653 -94883802 + (TGGA)n Simple_repeat Simple_repeat 3 132 0 186 236 0 0 chr12 48902933 48902988 -94883467 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 234 258 151 43 chr12 48903729 48903822 -94882633 - MIR SINE MIR -86 122 20 24 39 0 0 chr12 48904300 48904326 -94882129 + AT_rich Low_complexity Low_complexity 1 26 0 1102 206 12 4 chr12 48904326 48904583 -94881872 - L1PA3 LINE L1 -3 6152 5894 484 206 118 29 chr12 48905374 48905544 -94880911 + MIR SINE MIR 6 190 -72 469 285 5 55 chr12 48905921 48906018 -94880437 - L2 LINE L2 0 3313 3230 2280 178 77 23 chr12 48906018 48906497 -94879958 - MLT1D LTR MaLR 0 505 1 469 285 5 55 chr12 48906497 48906599 -94879856 - L2 LINE L2 -83 3230 3124 260 251 96 54 chr12 48906776 48906943 -94879512 - L2 LINE L2 -491 2823 2650 375 301 42 34 chr12 48907393 48907598 -94878857 - MIR SINE MIR -27 235 30 213 257 142 18 chr12 48908074 48908187 -94878268 + MIR SINE MIR 122 248 -14 485 208 59 0 chr12 48908673 48908774 -94877681 - AluJb SINE Alu -195 117 11 1047 159 0 22 chr12 48908790 48908972 -94877483 - AluJb SINE Alu -1 311 134 882 233 46 21 chr12 48912282 48912522 -94873933 - MIR SINE MIR 0 262 17 1694 170 0 17 chr12 48912900 48913276 -94873179 - AluSq SINE Alu 0 371 1 685 241 58 126 chr12 48913345 48913708 -94872747 + MLT1F1 LTR MaLR 4 359 -208 321 229 12 60 chr12 48914077 48914160 -94872295 - MER81 DNA DNA -12 102 24 366 234 80 7 chr12 48914523 48914660 -94871795 + MIR SINE MIR 81 227 -35 299 267 26 26 chr12 48914654 48914770 -94871685 + MER5A DNA MER1_type 24 139 -50 * 247 269 0 43 chr12 48915730 48915823 -94870632 + MIR3 SINE MIR 118 206 -2 774 162 172 59 chr12 48916089 48916263 -94870192 - MER20 DNA MER1_type 0 219 27 220 256 218 32 chr12 48916878 48917034 -94869421 + L2 LINE L2 2915 3099 -173 1123 209 87 9 chr12 48917125 48917587 -94868868 + MLT1F LTR MaLR 3 529 -13 240 78 255 0 chr12 48918064 48918115 -94868340 + AluJ/FRAM SINE Alu 217 280 -22 267 54 0 0 chr12 48918121 48918158 -94868297 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 195 184 0 0 chr12 48918210 48918248 -94868207 - L2 LINE L2 -10 3303 3266 1637 201 65 40 chr12 48918281 48918729 -94867726 - MLT1C LTR MaLR -4 463 5 728 215 51 0 chr12 48918786 48919000 -94867455 + AluSp SINE Alu 2 226 -87 526 76 0 0 chr12 48921896 48921962 -94864493 - AluSc SINE Alu -90 219 154 319 159 63 32 chr12 48921964 48922027 -94864428 + MLT1F1 LTR MaLR 325 389 -1 1036 237 83 66 chr12 48922028 48922450 -94864005 + L1ME3A LINE L1 5737 6165 -5 1231 172 0 27 chr12 48922462 48922683 -94863772 + AluJb SINE Alu 87 301 -11 462 234 17 57 chr12 48923031 48923206 -94863249 + L1MD1 LINE L1 4599 4766 -1380 * 2914 157 19 49 chr12 48923204 48923796 -94862659 + L1MD1 LINE L1 5350 5923 -319 396 248 22 49 chr12 48923796 48923934 -94862521 + FLAM_A SINE Alu 2 95 -38 1883 115 0 0 chr12 48924369 48924629 -94861826 - AluSq SINE Alu -53 260 1 99 71 0 0 chr12 48924947 48925144 -94861311 + GC_rich Low_complexity Low_complexity 1 197 0 257 235 37 31 chr12 48925234 48925396 -94861059 + (CCGCG)n Simple_repeat Simple_repeat 2 164 0 239 147 0 0 chr12 48925600 48925634 -94860821 - LTR29 LTR ERV1 -585 37 4 378 147 14 28 chr12 48926040 48926183 -94860272 + (TA)n Simple_repeat Simple_repeat 1 141 0 225 0 0 0 chr12 48926314 48926339 -94860116 + (TG)n Simple_repeat Simple_repeat 2 26 0 2036 105 0 41 chr12 48926400 48926718 -94859737 + AluSx SINE Alu 1 306 0 210 130 74 37 chr12 48928773 48928827 -94857628 + GA-rich Low_complexity Low_complexity 5 60 0 234 219 27 0 chr12 48929084 48929157 -94857298 + L1MD3 LINE L1 7921 7995 0 186 43 0 0 chr12 48930950 48930973 -94855482 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1057 100 7 0 chr12 48931783 48931933 -94854522 + L1PA8A LINE L1 5812 5962 -169 417 278 26 42 chr12 48934266 48934457 -94851998 - L2 LINE L2 -9 3304 3117 1139 198 37 30 chr12 48935963 48936113 -94850342 - L1MA6 LINE L1 -4 6296 6149 2551 106 28 8 chr12 48936113 48936470 -94849985 + THE1B LTR MaLR 1 364 0 1139 198 37 30 chr12 48936470 48936606 -94849849 - L1MA6 LINE L1 -151 6149 5999 26 0 0 0 chr12 48936821 48936847 -94849608 + AT_rich Low_complexity Low_complexity 1 26 0 183 210 32 113 chr12 48937749 48937873 -94848582 - L2 LINE L2 -79 3234 3121 258 176 20 0 chr12 48938783 48938834 -94847621 + MADE1 DNA Mariner 29 80 0 245 196 20 0 chr12 48941737 48941788 -94844667 + MADE1 DNA Mariner 29 80 0 221 277 19 71 chr12 48946280 48946435 -94840020 - L2 LINE L2 -73 3240 3094 1662 168 147 21 chr12 48946538 48946918 -94839537 + MSTA LTR MaLR 1 428 0 1772 155 99 0 chr12 48949827 48950111 -94836344 + AluJb SINE Alu 1 312 0 190 336 88 8 chr12 48951305 48951430 -94835025 - L2 LINE L2 -212 3060 2926 263 277 72 0 chr12 48951885 48951968 -94834487 + MIR SINE MIR 79 167 -95 201 211 19 19 chr12 48952163 48952215 -94834240 - L2 LINE L2 -73 3240 3189 2232 121 3 6 chr12 48952288 48952601 -94833854 + AluSx SINE Alu 1 312 0 23 68 0 0 chr12 48953068 48953112 -94833343 + AT_rich Low_complexity Low_complexity 1 44 0 2343 87 0 3 chr12 48954374 48954673 -94831782 - AluSc SINE Alu -11 298 1 678 335 81 26 chr12 48955274 48955854 -94830601 + L2 LINE L2 2297 2908 -406 345 326 86 0 chr12 48955983 48956158 -94830297 + L2 LINE L2 3107 3296 -17 366 234 117 41 chr12 48956420 48956565 -94829890 + MIR SINE MIR 90 245 -17 357 23 0 0 chr12 48956692 48956735 -94829720 + MADE1 DNA Mariner 1 43 -37 1889 110 7 55 chr12 48956831 48957123 -94829332 + AluSx SINE Alu 35 312 0 439 236 132 0 chr12 48970291 48970397 -94816058 - FLAM_A SINE Alu -9 124 5 337 347 46 0 chr12 48970433 48970606 -94815849 - MIR SINE MIR -4 258 78 * 855 331 65 35 chr12 48970600 48971444 -94815011 - L2 LINE L2 -85 3228 2352 252 289 60 12 chr12 48971764 48971847 -94814608 - L2 LINE L2 -8 3305 3219 199 281 0 73 chr12 48971994 48972090 -94814365 + MIR SINE MIR 124 212 -50 26 30 0 0 chr12 48972203 48972236 -94814219 + AT_rich Low_complexity Low_complexity 1 33 0 247 341 34 0 chr12 48973800 48973888 -94812567 - MIR SINE MIR -79 183 93 338 106 15 15 chr12 48974825 48974891 -94811564 + LTR60 LTR ERV1 1 66 -520 1140 244 28 19 chr12 48975033 48975357 -94811098 + LTR43 LTR ERV1 132 458 -144 261 83 0 0 chr12 48976342 48976378 -94810077 + (GGA)n Simple_repeat Simple_repeat 1 36 0 250 261 65 76 chr12 48976568 48976660 -94809795 - MER5A DNA MER1_type -1 188 98 777 265 67 69 chr12 48976813 48977716 -94808739 - L1MC4 LINE L1 -547 7495 6637 180 207 21 21 chr12 48977761 48977906 -94808549 + (TA)n Simple_repeat Simple_repeat 1 145 0 1317 209 12 40 chr12 48977960 48978281 -94808174 - AluJo SINE Alu 0 312 1 1575 261 110 58 chr12 48978293 48979446 -94807009 - L1MC4a LINE L1 -1293 6515 5303 699 209 14 0 chr12 48979447 48979586 -94806869 + MER68 LTR ERV1 412 552 -10 231 325 72 18 chr12 48979642 48980030 -94806425 - L1MC4a LINE L1 -1677 4469 4061 492 45 0 15 chr12 48980575 48980687 -94805768 - L1PA8 LINE L1 0 6172 6095 2002 156 0 9 chr12 48981228 48981543 -94804912 + AluJb SINE Alu 1 312 0 363 322 93 29 chr12 48981815 48982020 -94804435 + L2 LINE L2 3049 3266 -6 21 0 0 0 chr12 48982708 48982729 -94803726 + AT_rich Low_complexity Low_complexity 1 21 0 226 315 83 28 chr12 48982738 48982846 -94803609 - L2 LINE L2 -22 3291 3178 740 317 41 53 chr12 48983078 48983397 -94803058 - L2 LINE L2 -519 2795 2481 302 0 26 0 chr12 48983858 48983896 -94802559 + (CA)n Simple_repeat Simple_repeat 1 39 0 2106 109 24 3 chr12 48984652 48984945 -94801510 - AluSg SINE Alu -11 299 1 27 0 0 0 chr12 48985668 48985695 -94800760 + AT_rich Low_complexity Low_complexity 1 27 0 253 320 99 39 chr12 48986096 48986277 -94800178 + MIR SINE MIR 21 212 -50 251 307 48 84 chr12 48986354 48986520 -94799935 + MIR3 SINE MIR 39 198 -10 23 33 0 0 chr12 48987690 48987720 -94798735 + AT_rich Low_complexity Low_complexity 1 30 0 219 291 39 87 chr12 48988479 48988606 -94797849 - MIR SINE MIR -79 183 63 2434 89 0 6 chr12 48989657 48989970 -94796485 + AluSq SINE Alu 1 311 -2 29 28 0 0 chr12 48990274 48990310 -94796145 + AT_rich Low_complexity Low_complexity 1 36 0 2351 75 10 0 chr12 48990362 48990655 -94795800 + AluY SINE Alu 1 296 -15 890 204 7 58 chr12 48991499 48991793 -94794662 + MER33 DNA MER1_type 45 323 -1 41 66 0 0 chr12 48991822 48991898 -94794557 + AT_rich Low_complexity Low_complexity 1 76 0 203 323 31 21 chr12 48993798 48993894 -94792561 + MIR3 SINE MIR 85 181 -27 490 65 0 39 chr12 48993945 48994022 -94792433 + L1PA6 LINE L1 6081 6154 0 2013 108 0 19 chr12 48995074 48995381 -94791074 - AluSg SINE Alu -9 301 1 3681 173 53 57 chr12 48996582 48997445 -94789010 + L1MA9 LINE L1 4743 5599 -713 2224 118 0 0 chr12 48997445 48997749 -94788706 + AluSx SINE Alu 2 305 -7 3681 173 53 57 chr12 48997749 48998423 -94788032 + L1MA9 LINE L1 5599 6274 -38 183 338 149 0 chr12 48998999 48999073 -94787382 + MIR SINE MIR 18 102 -160 478 105 0 13 chr12 48999074 48999150 -94787305 - MADE1 DNA Mariner -5 75 1 267 269 157 22 chr12 48999161 48999295 -94787160 + MIR SINE MIR 111 262 0 233 172 35 0 chr12 49000926 49000984 -94785471 + (TATG)n Simple_repeat Simple_repeat 4 63 0 1329 228 26 4 chr12 49001077 49001349 -94785106 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr12 49001349 49001369 -94785086 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 222 37 0 0 chr12 49006244 49006271 -94780184 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 238 178 30 chr12 49006911 49007012 -94779443 - MIR SINE MIR -69 139 24 238 285 40 139 chr12 49009150 49009473 -94776982 + L2 LINE L2 3020 3310 -3 1746 212 87 18 chr12 49009711 49010311 -94776144 + MER67C LTR ERV1 1 710 0 514 292 102 26 chr12 49011201 49011465 -94774990 + MER115 DNA AcHobo 387 670 -23 752 339 127 10 chr12 49012821 49013231 -94773224 + MER115 DNA AcHobo 211 668 -25 2314 134 11 26 chr12 49013605 49013986 -94772469 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr12 49014247 49014287 -94772168 + AT_rich Low_complexity Low_complexity 1 40 0 1605 202 68 15 chr12 49015003 49015413 -94771042 + MSTB1 LTR MaLR 1 432 0 554 308 34 68 chr12 49015561 49015883 -94770572 + L2 LINE L2 3003 3313 0 2133 178 106 52 chr12 49016110 49016231 -94770224 + MER67C LTR ERV1 2 115 -595 2348 104 3 0 chr12 49016231 49016538 -94769917 + AluSg SINE Alu 3 310 0 2133 178 106 52 chr12 49016538 49017012 -94769443 + MER67C LTR ERV1 115 629 -81 660 306 99 45 chr12 49017372 49017725 -94768730 + MER115 DNA AcHobo 1 372 -321 526 259 79 5 chr12 49017782 49017971 -94768484 + MER115 DNA AcHobo 466 668 -25 216 311 0 0 chr12 49017991 49018052 -94768403 + MIR SINE MIR 86 146 -116 354 281 59 37 chr12 49018546 49018681 -94767774 - MIR SINE MIR -51 211 74 2121 99 0 3 chr12 49019195 49019505 -94766950 - AluSc SINE Alu 0 309 1 376 321 15 15 chr12 49022530 49022661 -94763794 - L2 LINE L2 -1 3271 3141 23 68 0 0 chr12 49023829 49023873 -94762582 + AT_rich Low_complexity Low_complexity 1 44 0 13742 145 36 5 chr12 49024652 49026997 -94759458 + Tigger1 DNA MER2_type 2 2418 0 4071 271 95 52 chr12 49029133 49030907 -94755548 + L2 LINE L2 1087 2936 -378 1698 115 4 0 chr12 49030919 49031163 -94755292 + THE1C LTR MaLR 1 245 -130 4586 121 71 8 chr12 49031164 49031898 -94754557 - LTR17 LTR ERV1 0 780 1 2369 68 0 0 chr12 49031898 49032190 -94754265 - HERV17 LTR ERV1 0 8626 8335 * 14837 176 79 60 chr12 49032183 49036277 -94750178 - HERV17 LTR ERV1 -4444 4182 11 5219 127 10 8 chr12 49036289 49037067 -94749388 - LTR17 LTR ERV1 0 780 1 993 98 0 0 chr12 49037067 49037200 -94749255 + THE1C LTR MaLR 243 375 0 218 300 43 0 chr12 49037208 49037278 -94749177 + L2 LINE L2 2934 3006 -307 4429 93 19 34 chr12 49037331 49037576 -94748879 - PABL_A LTR ERV1 -1 659 412 2253 106 0 3 chr12 49037576 49037877 -94748578 - AluY SINE Alu -11 300 1 4429 93 19 34 chr12 49037877 49038300 -94748155 - PABL_A LTR ERV1 -248 412 1 757 287 82 40 chr12 49038562 49038890 -94747565 + L2 LINE L2 2970 3311 -2 2093 102 0 14 chr12 49038933 49039226 -94747229 + AluSg SINE Alu 1 289 -21 1178 77 137 0 chr12 49040195 49040378 -94746077 - L1PA10 LINE L1 -4 6164 5957 39 80 0 0 chr12 49040576 49040664 -94745791 + AT_rich Low_complexity Low_complexity 1 88 0 290 328 115 44 chr12 49041290 49041440 -94745015 + L2 LINE L2 2049 2187 -1127 1844 139 61 76 chr12 49041440 49041836 -94744619 + MLT1B LTR MaLR 1 390 0 290 328 115 44 chr12 49041836 49042023 -94744432 + L2 LINE L2 2187 2410 -904 21 57 0 0 chr12 49042344 49042379 -94744076 + AT_rich Low_complexity Low_complexity 1 35 0 266 245 32 32 chr12 49042397 49042491 -94743964 - L1ME3 LINE L1 -81 6081 5988 313 235 69 0 chr12 49042591 49042693 -94743762 - L1ME3 LINE L1 -216 5954 5846 465 303 81 31 chr12 49042695 49043114 -94743341 - L1MEd LINE L1 -4910 1209 895 4849 156 47 77 chr12 49043635 49044095 -94742360 - Tigger3b DNA MER2_type -1797 1231 758 1451 193 26 35 chr12 49044095 49044406 -94742049 - AluJb SINE Alu 0 312 5 4849 156 47 77 chr12 49044406 49044921 -94741534 - Tigger3b DNA MER2_type -2270 758 301 2065 138 3 16 chr12 49044921 49045226 -94741229 + AluSx SINE Alu 1 301 -11 4849 156 47 77 chr12 49045226 49045519 -94740936 - Tigger3b DNA MER2_type -2727 301 1 390 283 83 7 chr12 49045752 49045897 -94740558 + LTR16A LTR ERVL 56 211 -239 21 0 0 0 chr12 49045992 49046013 -94740442 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 225 0 chr12 49046773 49046915 -94739540 - MIR SINE MIR -79 183 10 21 0 0 0 chr12 49048748 49048769 -94737686 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr12 49048896 49048926 -94737529 + (T)n Simple_repeat Simple_repeat 1 30 0 26 30 0 0 chr12 49052778 49052811 -94733644 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 49053192 49053213 -94733242 + AT_rich Low_complexity Low_complexity 1 21 0 550 341 74 39 chr12 49054149 49054638 -94731817 - L2 LINE L2 -4 3268 2764 21 36 0 0 chr12 49055131 49055159 -94731296 + AT_rich Low_complexity Low_complexity 1 28 0 336 369 28 75 chr12 49057984 49058198 -94728257 + L2 LINE L2 2981 3184 -88 863 193 6 0 chr12 49059198 49059359 -94727096 + L1PA16 LINE L1 6004 6165 -1 538 291 29 29 chr12 49059513 49059688 -94726767 - MER5B DNA MER1_type 0 178 4 638 344 86 32 chr12 49059825 49060351 -94726104 - L2 LINE L2 -337 2977 2424 435 253 143 42 chr12 49060409 49060646 -94725809 - MIR SINE MIR 0 262 2 24 0 0 0 chr12 49060731 49060755 -94725700 + AT_rich Low_complexity Low_complexity 1 24 0 5983 140 35 27 chr12 49061570 49062635 -94723820 + L1MA4A LINE L1 4235 5345 -958 1668 195 17 0 chr12 49062635 49062927 -94723528 + AluJo SINE Alu 1 297 -15 5983 140 35 27 chr12 49062927 49063890 -94722565 + L1MA4A LINE L1 5345 6299 -4 210 417 92 0 chr12 49064329 49064449 -94722006 - L2 LINE L2 0 3272 3142 1136 168 53 89 chr12 49064633 49064859 -94721596 + MER67D LTR ERV1 1 233 -281 2095 133 7 3 chr12 49064859 49065161 -94721294 + AluSq SINE Alu 1 303 -10 1136 168 53 89 chr12 49065161 49065479 -94720976 + MER67D LTR ERV1 233 513 -1 24 53 0 0 chr12 49065754 49065792 -94720663 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr12 49065839 49065859 -94720596 + (TA)n Simple_repeat Simple_repeat 2 21 0 9996 39 7 124 chr12 49066673 49068233 -94718222 + SVA Other Other 1 1377 -9 1289 254 50 41 chr12 49068363 49068800 -94717655 + LTR16A1 LTR ERVL 17 457 0 317 275 69 94 chr12 49070180 49070584 -94715871 + L1MEd LINE L1 3 396 -5723 736 293 90 57 chr12 49070782 49070899 -94715556 + L1M4 LINE L1 4422 4534 -1612 1272 148 79 55 chr12 49070899 49071190 -94715265 + AluJo SINE Alu 1 298 -4 736 293 90 57 chr12 49071190 49071981 -94714474 + L1M4 LINE L1 4534 5360 -786 217 242 16 0 chr12 49072089 49072151 -94714304 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 2014 122 21 0 chr12 49072738 49073024 -94713431 - AluSx SINE Alu -19 293 2 194 227 23 0 chr12 49073166 49073210 -94713245 + L2 LINE L2 3264 3308 -5 219 125 0 0 chr12 49074478 49074518 -94711937 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 637 244 65 72 chr12 49074826 49075053 -94711402 + L1MC4 LINE L1 7766 7992 -50 2331 106 0 0 chr12 49075053 49075365 -94711090 - AluSx SINE Alu 0 312 1 637 244 65 72 chr12 49075365 49075416 -94711039 + L1MC4 LINE L1 7992 8042 0 23 33 0 0 chr12 49075814 49075844 -94710611 + AT_rich Low_complexity Low_complexity 1 30 0 238 333 62 31 chr12 49076100 49076229 -94710226 - MIR SINE MIR -71 191 59 326 250 11 65 chr12 49076452 49076544 -94709911 - L3 LINE CR1 -2 1575 1489 444 356 58 4 chr12 49077579 49077804 -94708651 + MIR SINE MIR 7 243 -19 202 233 0 0 chr12 49078064 49078107 -94708348 + (TAG)n Simple_repeat Simple_repeat 1 43 0 476 297 79 15 chr12 49078952 49079154 -94707301 + MIR SINE MIR 48 262 0 872 250 36 0 chr12 49079676 49079896 -94706559 - MER46C DNA MER2_type -110 228 1 185 300 20 0 chr12 49082357 49082407 -94704048 - L2 LINE L2 0 3313 3263 209 366 59 10 chr12 49082572 49082673 -94703782 + L2 LINE L2 3132 3237 -35 373 247 27 67 chr12 49084205 49084355 -94702100 - L2 LINE L2 -44 3269 3126 579 312 104 11 chr12 49084569 49084848 -94701607 - L2 LINE L2 -561 2753 2449 184 328 75 0 chr12 49085287 49085354 -94701101 + MIR SINE MIR 8 79 -183 2528 151 5 29 chr12 49085927 49086372 -94700083 + Tigger2a DNA MER2_type 1 434 0 333 343 9 0 chr12 49086490 49086598 -94699857 - MER117 DNA MER1_type -88 109 1 331 306 52 20 chr12 49086650 49086902 -94699553 + L2 LINE L2 2718 2977 -337 204 163 0 0 chr12 49087435 49087478 -94698977 + T-rich Low_complexity Low_complexity 1 43 0 1572 96 36 0 chr12 49088731 49088950 -94697505 - MER30 DNA MER1_type 0 230 4 272 211 98 114 chr12 49089715 49089838 -94696617 + L2 LINE L2 3190 3310 -3 783 295 75 45 chr12 49089910 49090446 -94696009 + HAL1 LINE L1 1366 1917 -590 552 176 0 0 chr12 49090600 49090691 -94695764 + FLAM_A SINE Alu 35 125 -17 580 228 43 25 chr12 49090961 49091123 -94695332 + HAL1b LINE L1 746 910 -438 324 188 29 14 chr12 49091619 49091688 -94694767 - MER5A DNA MER1_type -110 79 10 22 0 0 0 chr12 49091945 49091967 -94694488 + AT_rich Low_complexity Low_complexity 1 22 0 339 288 71 71 chr12 49092955 49093125 -94693330 - MER5B DNA MER1_type -8 170 1 2534 61 0 6 chr12 49093943 49094255 -94692200 - AluY SINE Alu 0 311 2 21 0 0 0 chr12 49094551 49094572 -94691883 + AT_rich Low_complexity Low_complexity 1 21 0 873 197 17 34 chr12 49094837 49095015 -94691440 + MER20 DNA MER1_type 43 217 -2 186 118 0 0 chr12 49095127 49095161 -94691294 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1981 108 0 7 chr12 49095164 49095433 -94691022 - AluSg1 SINE Alu -42 267 1 1114 123 46 0 chr12 49096009 49096204 -94690251 + L1MA8 LINE L1 6085 6288 -3 293 241 24 24 chr12 49096234 49096317 -94690138 - L2 LINE L2 -485 2829 2747 323 267 15 61 chr12 49097565 49097696 -94688759 - MIR SINE MIR -11 251 127 228 86 0 0 chr12 49099954 49099989 -94686466 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr12 49100151 49100174 -94686281 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 49100636 49100664 -94685791 + AT_rich Low_complexity Low_complexity 1 28 0 376 288 90 0 chr12 49100938 49101049 -94685406 - MER5A DNA MER1_type -60 129 9 579 270 94 0 chr12 49101079 49101238 -94685217 + MIR SINE MIR 37 210 -52 254 299 94 17 chr12 49101699 49101816 -94684639 + L2 LINE L2 3096 3221 -92 739 282 11 5 chr12 49101816 49102004 -94684451 + MIR SINE MIR 25 213 -49 651 339 134 13 chr12 49102190 49102638 -94683817 + MLT1H1 LTR MaLR 54 555 0 222 371 91 8 chr12 49103809 49103941 -94682514 - MIR SINE MIR -106 156 14 22 0 0 0 chr12 49104248 49104270 -94682185 + AT_rich Low_complexity Low_complexity 1 22 0 800 207 121 20 chr12 49104329 49104527 -94681928 + MER20 DNA MER1_type 2 219 0 361 206 325 0 chr12 49105252 49105378 -94681077 - MIR3 SINE MIR 0 208 42 225 337 11 22 chr12 49105954 49106043 -94680412 - MIR SINE MIR -105 103 16 24 32 0 0 chr12 49106583 49106614 -94679841 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 49106862 49106884 -94679571 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 49107187 49107211 -94679244 + AT_rich Low_complexity Low_complexity 1 24 0 375 344 96 23 chr12 49108129 49108557 -94677898 + MARNA DNA Mariner 115 573 -13 418 222 0 12 chr12 49108808 49108889 -94677566 + MER94 DNA DNA 2 81 -53 16785 186 72 24 chr12 49109471 49111656 -94674799 - L1PA12 LINE L1 -1624 5960 3880 433 143 39 0 chr12 49111656 49111733 -94674722 - MADE1 DNA Mariner 0 80 1 16785 186 72 24 chr12 49111733 49114200 -94672255 - L1PA12 LINE L1 -3704 3880 7 493 206 155 0 chr12 49114441 49114538 -94671917 + MER44D DNA MER2_type 1 382 -227 367 187 0 49 chr12 49114549 49114635 -94671820 + L1P3 LINE L1 212 1410 -5588 945 181 50 36 chr12 49114635 49114856 -94671599 + MER44D DNA MER2_type 382 605 0 239 186 0 0 chr12 49115022 49115065 -94671390 - MLT1J2 LTR MaLR -326 124 82 199 342 13 0 chr12 49115548 49115627 -94670828 - L3 LINE CR1 -151 1426 1347 1782 204 119 16 chr12 49116126 49116708 -94669747 + LTR48B LTR ERV1 3 644 0 1011 333 123 27 chr12 49116860 49117592 -94668863 + L2 LINE L2 2150 2951 -363 2878 122 125 119 chr12 49117592 49118878 -94667577 + pTR5 LTR ERV1 744 2417 -21 258 333 9 18 chr12 49118878 49118992 -94667463 + L2 LINE L2 2946 3058 -255 1697 163 17 14 chr12 49119778 49120073 -94666382 + AluJo SINE Alu 1 296 -16 238 338 103 24 chr12 49120382 49120595 -94665860 + L2 LINE L2 2829 3058 -214 694 354 59 29 chr12 49120857 49121428 -94665027 - L2 LINE L2 -257 3015 2431 2297 54 6 54 chr12 49121647 49121960 -94664495 + AluY SINE Alu 2 299 -12 217 132 0 0 chr12 49122499 49122537 -94663918 + (A)n Simple_repeat Simple_repeat 1 38 0 2090 128 138 8 chr12 49122953 49123329 -94663126 - MSTB1 LTR MaLR -4 428 4 1600 190 31 3 chr12 49123496 49123786 -94662669 + AluJb SINE Alu 1 298 -14 2223 94 37 0 chr12 49124022 49124319 -94662136 + AluSq SINE Alu 1 308 -5 2085 243 109 12 chr12 49124905 49125559 -94660896 - MER50 LTR ERV1 -1 733 17 3152 149 12 43 chr12 49125687 49126265 -94660190 - MER34B LTR ERV1 -5 560 1 331 191 36 0 chr12 49127092 49127176 -94659279 + L1MB7 LINE L1 6091 6177 -7 204 222 0 0 chr12 49127430 49127475 -94658980 + A-rich Low_complexity Low_complexity 5 49 0 885 32 32 0 chr12 49127569 49127693 -94658762 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1904 143 4 0 chr12 49127693 49127972 -94658483 - AluSx SINE Alu -32 280 1 1001 321 81 25 chr12 49128918 49129513 -94656942 + MERVL LTR ERVL 4069 4696 -789 494 213 8 8 chr12 49129527 49129654 -94656801 - MER104 DNA Tc2 -7 173 47 288 0 0 0 chr12 49129849 49129881 -94656574 + (TTA)n Simple_repeat Simple_repeat 2 33 0 253 208 21 0 chr12 49130247 49130295 -94656160 + MERVL LTR ERVL 4903 4951 -813 440 301 46 32 chr12 49130370 49130586 -94655869 + MERVL LTR ERVL 5043 5261 -503 384 22 0 0 chr12 49130760 49130805 -94655650 + (TG)n Simple_repeat Simple_repeat 2 46 0 1209 168 0 38 chr12 49130806 49131015 -94655440 - AluJo SINE Alu -31 281 81 408 243 107 45 chr12 49131094 49131271 -94655184 - MLT1J LTR MaLR -35 476 289 454 213 35 78 chr12 49131824 49131965 -94654490 - MER58B DNA MER1_type -16 325 191 1880 200 92 19 chr12 49132684 49133496 -94652959 + L1ME3A LINE L1 4802 5664 -520 * 2009 191 79 85 chr12 49133474 49133976 -94652479 + L1MB7 LINE L1 5531 6030 -154 2298 162 65 69 chr12 49133976 49134483 -94651972 + MLT1D LTR MaLR 1 505 0 2009 191 79 85 chr12 49134483 49134628 -94651827 + L1MB7 LINE L1 6030 6174 -10 254 331 22 66 chr12 49135306 49135442 -94651013 - MLT1J LTR MaLR -68 443 314 9657 142 4 1 chr12 49135613 49137994 -94648461 - L1PA11 LINE L1 0 6174 3791 20326 100 10 9 chr12 49137995 49140901 -94645554 - L1PA11 LINE L1 -3223 2923 14 307 192 0 51 chr12 49140901 49140979 -94645476 + MER41A LTR ERV1 474 547 -7 536 218 40 98 chr12 49142862 49143087 -94643368 + MER58C DNA MER1_type 2 213 -2 441 58 159 0 chr12 49143478 49143547 -94642908 + MADE1 DNA Mariner 1 80 0 23 68 0 0 chr12 49145950 49145994 -94640461 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr12 49146147 49146177 -94640278 + AT_rich Low_complexity Low_complexity 1 30 0 241 363 25 0 chr12 49146855 49146935 -94639520 + L2 LINE L2 3159 3240 -32 194 276 0 103 chr12 49147255 49147342 -94639113 - MIR SINE MIR -134 128 51 431 255 121 64 chr12 49147607 49148027 -94638428 + L1ME4a LINE L1 5482 5925 -196 2000 125 34 3 chr12 49148027 49148322 -94638133 + AluSq SINE Alu 1 304 -9 988 276 80 38 chr12 49148337 49148527 -94637928 + L1ME3A LINE L1 5692 5873 -297 814 158 0 0 chr12 49148527 49148660 -94637795 + AluJo SINE Alu 1 133 -169 988 276 80 38 chr12 49148660 49148921 -94637534 + L1ME3A LINE L1 5873 6162 -8 27 0 0 0 chr12 49149238 49149265 -94637190 + AT_rich Low_complexity Low_complexity 1 27 0 394 290 164 61 chr12 49149710 49149941 -94636514 + MIR SINE MIR 6 260 -2 2366 104 0 0 chr12 49150210 49150517 -94635938 - AluSg SINE Alu -3 307 1 23 54 0 0 chr12 49150518 49150555 -94635900 + AT_rich Low_complexity Low_complexity 1 37 0 195 42 0 0 chr12 49150633 49150657 -94635798 + (TG)n Simple_repeat Simple_repeat 2 25 0 408 266 56 42 chr12 49150941 49151084 -94635371 + MIR SINE MIR 61 205 -57 385 381 93 16 chr12 49151508 49151755 -94634700 - L2 LINE L2 0 3272 3007 188 384 22 36 chr12 49151932 49152156 -94634299 - L2 LINE L2 -467 2847 2627 2407 71 10 7 chr12 49152227 49152535 -94633920 + AluY SINE Alu 1 309 -2 200 230 172 23 chr12 49152535 49152622 -94633833 - MIR SINE MIR -155 107 8 498 297 169 16 chr12 49153354 49153909 -94632546 + L1ME4a LINE L1 5347 5986 -135 227 320 13 13 chr12 49154107 49154182 -94632273 - MIR SINE MIR -113 95 21 395 335 86 19 chr12 49154442 49155243 -94631212 - L1ME LINE L1 -3148 2932 2078 534 301 104 38 chr12 49155531 49156269 -94630186 - HAL1b LINE L1 -490 858 72 745 187 90 0 chr12 49157448 49157582 -94628873 + AluJo SINE Alu 137 282 -30 198 0 0 0 chr12 49157586 49157608 -94628847 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 49158180 49158202 -94628253 + AT_rich Low_complexity Low_complexity 1 22 0 2169 123 0 0 chr12 49158248 49158540 -94627915 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr12 49158540 49158565 -94627890 + AT_rich Low_complexity Low_complexity 1 25 0 823 315 122 21 chr12 49158578 49159291 -94627164 - L2 LINE L2 -91 3222 2432 599 299 108 21 chr12 49159543 49159868 -94626587 - L2 LINE L2 -233 3080 2721 228 302 19 107 chr12 49161208 49161367 -94625088 - L2 LINE L2 -221 3051 2907 450 354 118 23 chr12 49161423 49161813 -94624642 - L2 LINE L2 -11 3302 2876 25 31 0 0 chr12 49161889 49161921 -94624534 + AT_rich Low_complexity Low_complexity 1 32 0 238 214 107 0 chr12 49162979 49163035 -94623420 - LTR16A LTR ERVL -8 442 381 240 287 11 0 chr12 49163040 49163134 -94623321 - L1ME LINE L1 -5270 800 706 381 165 10 68 chr12 49163291 49163394 -94623061 - L1ME LINE L1 -5510 560 464 1101 215 59 104 chr12 49163475 49163916 -94622539 - MLT1D LTR MaLR -44 461 41 1021 287 33 46 chr12 49163954 49164410 -94622045 - L1ME LINE L1 -5611 459 10 1122 249 63 34 chr12 49164419 49165122 -94621333 + L1M4 LINE L1 2683 3405 -2741 2726 140 7 14 chr12 49165217 49165646 -94620809 - MSTB LTR MaLR 0 426 1 1704 165 117 3 chr12 49165783 49166117 -94620338 + MSTD LTR MaLR 25 396 0 189 0 0 0 chr12 49166733 49166754 -94619701 + (TG)n Simple_repeat Simple_repeat 1 21 0 310 323 31 0 chr12 49167703 49167799 -94618656 + MIR SINE MIR 17 115 -93 2062 98 3 20 chr12 49167833 49168128 -94618327 - AluSp SINE Alu -2 311 22 186 310 69 0 chr12 49169002 49169060 -94617395 + L2 LINE L2 3205 3266 -6 2024 68 3 90 chr12 49169275 49169675 -94616780 - AluY SINE Alu 0 373 1 613 192 70 6 chr12 49170535 49170691 -94615764 - MSTA LTR MaLR -262 166 1 1242 27 0 0 chr12 49170729 49170876 -94615579 - L1PA5 LINE L1 -8 6146 6000 211 330 47 105 chr12 49170924 49171182 -94615273 + L2 LINE L2 2986 3228 -44 479 303 21 7 chr12 49171406 49171551 -94614904 - MER5A DNA MER1_type -5 184 38 387 0 0 0 chr12 49171651 49171694 -94614761 + (CA)n Simple_repeat Simple_repeat 1 43 0 2434 48 0 14 chr12 49171771 49172136 -94614319 - AluY SINE Alu 0 381 21 11619 182 61 17 chr12 49172822 49175136 -94611319 - Tigger1 DNA MER2_type -3 2415 1 215 340 65 20 chr12 49175921 49176074 -94610381 + L2 LINE L2 1547 1706 -1608 244 331 60 25 chr12 49176138 49176229 -94610226 + L2 LINE L2 1680 1766 -1548 1388 202 10 42 chr12 49176229 49176536 -94609919 - AluJo SINE Alu -15 297 1 244 331 60 25 chr12 49176536 49176761 -94609694 + L2 LINE L2 1766 2007 -1307 234 0 0 0 chr12 49176927 49176953 -94609502 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1011 186 41 23 chr12 49177306 49177527 -94608928 + MSTB1 LTR MaLR 1 225 -207 751 165 0 0 chr12 49177525 49177646 -94608809 - MSTB1 LTR MaLR -14 418 298 * 28 48 0 0 chr12 49177946 49177988 -94608467 + AT_rich Low_complexity Low_complexity 1 42 0 649 273 22 6 chr12 49179617 49179800 -94606655 - MER5A DNA MER1_type -3 186 1 3340 186 38 20 chr12 49180593 49181307 -94605148 - LTR8A LTR ERV1 0 727 1 2476 207 14 21 chr12 49181770 49182477 -94603978 - LTR27 LTR ERV1 -2 634 3 3943 293 100 31 chr12 49182547 49184506 -94601949 + L2 LINE L2 1214 3313 0 2361 85 0 3 chr12 49184698 49184993 -94601462 - AluSq SINE Alu -14 299 6 1353 175 18 15 chr12 49185369 49185643 -94600812 - MER33 DNA MER1_type -49 275 1 34 42 0 0 chr12 49185667 49185715 -94600740 + AT_rich Low_complexity Low_complexity 1 48 0 2377 96 0 0 chr12 49185715 49186016 -94600439 - AluY SINE Alu -10 301 1 386 256 49 98 chr12 49186124 49186409 -94600046 + LTR37B LTR ERV1 198 468 0 212 234 0 0 chr12 49186948 49186995 -94599460 + GA-rich Low_complexity Low_complexity 2 48 0 254 307 132 9 chr12 49187866 49187980 -94598475 - MIR SINE MIR -43 219 92 490 277 86 22 chr12 49188153 49188420 -94598035 + LTR33A LTR ERVL 227 510 -13 1291 180 99 37 chr12 49188523 49188817 -94597638 - AluJb SINE Alu 0 312 1 209 323 40 20 chr12 49188966 49189065 -94597390 - MIR SINE MIR -72 190 90 1132 184 0 5 chr12 49189682 49189872 -94596583 + AluJo SINE Alu 11 199 -113 962 307 117 48 chr12 49190386 49190933 -94595522 - MLT1K LTR MaLR -2 586 2 635 167 0 0 chr12 49191856 49191970 -94594485 + L1M4 LINE L1 5681 5794 -380 415 141 0 0 chr12 49191982 49192053 -94594402 - L1PA16 LINE L1 -9 6157 6087 2394 141 5 8 chr12 49192085 49192461 -94593994 + THE1C LTR MaLR 1 375 0 10168 111 20 29 chr12 49192461 49194055 -94592400 + THE1C-int LTR MaLR 1 1580 0 1065 165 0 16 chr12 49194055 49194237 -94592218 + THE1C LTR MaLR 1 179 -196 32 0 0 0 chr12 49194548 49194580 -94591875 + AT_rich Low_complexity Low_complexity 1 32 0 205 342 26 0 chr12 49194939 49195015 -94591440 - L2 LINE L2 -556 2758 2681 319 313 73 50 chr12 49195877 49196056 -94590399 - L2 LINE L2 -217 3055 2873 355 243 54 0 chr12 49196439 49196513 -94589942 + MIR SINE MIR 185 262 0 25 31 0 0 chr12 49196513 49196545 -94589910 + AT_rich Low_complexity Low_complexity 1 32 0 291 298 0 39 chr12 49196621 49196725 -94589730 - L2 LINE L2 -4 3309 3210 749 342 199 29 chr12 49197768 49198838 -94587617 + L3 LINE CR1 275 1526 -51 243 157 0 0 chr12 49199716 49199767 -94586688 + T-rich Low_complexity Low_complexity 1 51 0 507 278 41 30 chr12 49200083 49200252 -94586203 + MIR SINE MIR 13 183 -79 21 71 0 0 chr12 49200773 49200815 -94585640 + AT_rich Low_complexity Low_complexity 1 42 0 344 303 48 48 chr12 49201282 49201447 -94585008 - HAL1 LINE L1 -25 2482 2318 988 238 92 61 chr12 49201625 49201953 -94584502 + MLT2B1 LTR ERVL 1 338 -182 301 268 10 31 chr12 49201939 49202036 -94584419 + MLT1C LTR MaLR 373 467 0 * 1506 130 19 31 chr12 49202039 49202300 -94584155 - L1M3 LINE L1 -466 5705 5448 1207 113 0 16 chr12 49202617 49202802 -94583653 + AluSg/x SINE Alu 121 302 -10 369 234 171 0 chr12 49203861 49203972 -94582483 + MIR SINE MIR 56 185 -77 2042 94 3 45 chr12 49204161 49204469 -94581986 + AluSc SINE Alu 3 298 0 337 280 15 61 chr12 49206056 49206188 -94580267 - MIR SINE MIR -2 260 135 242 351 82 16 chr12 49207281 49207481 -94578974 - MIR SINE MIR -14 248 38 227 320 30 0 chr12 49207483 49207583 -94578872 + L3 LINE CR1 719 821 -756 226 301 0 41 chr12 49207752 49207825 -94578630 + MIR3 SINE MIR 88 157 -51 2946 98 7 12 chr12 49209713 49210143 -94576312 + MER41B LTR ERV1 151 578 -57 8879 54 1 2 chr12 49210163 49212056 -94574399 - L1PA5 LINE L1 0 6154 4263 4421 171 4 19 chr12 49212721 49213521 -94572934 + Tigger1 DNA MER2_type 1 788 -1630 22 0 0 0 chr12 49213628 49213650 -94572805 + GC_rich Low_complexity Low_complexity 1 22 0 986 236 42 21 chr12 49218690 49218931 -94567524 + MIR SINE MIR 17 262 0 4042 140 25 24 chr12 49219474 49220196 -94566259 + L1MA9 LINE L1 5585 6307 -5 1215 317 153 19 chr12 49221032 49221934 -94564521 + L2 LINE L2 2104 3121 -192 954 336 62 25 chr12 49222161 49222649 -94563806 + L2 LINE L2 2804 3309 -4 5695 157 13 15 chr12 49223855 49225233 -94561222 - L1M2 LINE L1 -603 5697 4321 3438 129 61 14 chr12 49225233 49225862 -94560593 + L1MA6 LINE L1 5634 6300 0 1459 108 24 5 chr12 49226003 49226043 -94560412 + AluY SINE Alu 85 123 -188 393 39 0 0 chr12 49226043 49226094 -94560361 + (CA)n Simple_repeat Simple_repeat 2 52 0 1459 108 24 5 chr12 49226094 49226266 -94560189 + AluY SINE Alu 123 301 -10 454 291 215 16 chr12 49226508 49226759 -94559696 + MLT1H LTR MaLR 23 323 -226 299 181 184 11 chr12 49226771 49226872 -94559583 + MLT1H LTR MaLR 439 549 0 251 53 0 26 chr12 49226903 49226941 -94559514 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2019 122 31 3 chr12 49226944 49227238 -94559217 - AluSg SINE Alu -8 302 1 248 216 9 27 chr12 49227309 49227420 -94559035 + (TA)n Simple_repeat Simple_repeat 2 110 0 1678 212 49 47 chr12 49227422 49227882 -94558573 - MLT1D LTR MaLR 0 467 1 1117 167 118 77 chr12 49227902 49228189 -94558266 - MER46C DNA MER2_type -23 315 17 1336 254 39 16 chr12 49228338 49228720 -94557735 - L1ME3A LINE L1 -213 5957 5567 450 319 22 7 chr12 49228807 49228945 -94557510 + MIR3 SINE MIR 20 159 -49 2807 152 31 6 chr12 49229162 49229643 -94556812 - MER73 LTR ERVL 0 644 152 490 165 12 12 chr12 49229646 49229731 -94556724 - MLT1D LTR MaLR -97 408 324 937 154 23 11 chr12 49229741 49229916 -94556539 - MER73 LTR ERVL -467 177 1 2169 171 45 88 chr12 49230559 49231091 -94555364 - LTR22 LTR ERVK 0 509 1 187 269 96 0 chr12 49232845 49232897 -94553558 + L2 LINE L2 2633 2689 -625 222 291 38 0 chr12 49232932 49233011 -94553444 + L2 LINE L2 2764 2845 -469 191 36 36 0 chr12 49233056 49233084 -94553371 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 276 300 30 10 chr12 49233106 49233206 -94553249 + L2 LINE L2 2947 3048 -265 1446 216 52 35 chr12 49234181 49234326 -94552129 + MLT1A1 LTR MaLR 13 154 -211 2092 124 0 17 chr12 49234326 49234625 -94551830 + AluSq SINE Alu 1 294 -19 1446 216 52 35 chr12 49234625 49234826 -94551629 + MLT1A1 LTR MaLR 154 365 0 465 310 100 26 chr12 49235807 49236117 -94550338 - L1MC5 LINE L1 -176 7785 7453 234 241 69 0 chr12 49236171 49236258 -94550197 - L1MC5 LINE L1 -603 7358 7266 570 222 84 31 chr12 49236360 49236571 -94549884 - L1MC4 LINE L1 -728 7233 7028 371 235 173 39 chr12 49236605 49236784 -94549671 - MER93a LTR ERV1 0 402 200 389 331 159 21 chr12 49236832 49237122 -94549333 + L2 LINE L2 2573 2902 -412 1834 155 52 30 chr12 49237139 49237506 -94548949 + THE1C LTR MaLR 1 375 0 9714 127 39 7 chr12 49237506 49239038 -94547417 + THE1C-int LTR MaLR 1 1580 0 1808 150 55 33 chr12 49239038 49239405 -94547050 + THE1C LTR MaLR 1 375 0 629 212 92 36 chr12 49239749 49240003 -94546452 - MER52A LTR ERV1 -29 906 297 629 262 1 20 chr12 49240276 49240427 -94546028 - MER52A LTR ERV1 -29 472 352 653 230 14 99 chr12 49240436 49240742 -94545713 - LTR28 LTR ERV1 -849 906 1 241 319 121 0 chr12 49240811 49240902 -94545553 + MLT1I LTR MaLR 112 213 -196 352 226 76 50 chr12 49240931 49241105 -94545350 + MLT1I LTR MaLR 278 409 0 1755 183 7 3 chr12 49241127 49241422 -94545033 - AluJo SINE Alu -14 298 3 196 302 198 38 chr12 49241607 49241713 -94544742 + L2 LINE L2 3150 3272 0 212 250 10 96 chr12 49243143 49243247 -94543208 - MIR SINE MIR -25 237 143 24 77 0 0 chr12 49243515 49243567 -94542888 + AT_rich Low_complexity Low_complexity 1 52 0 422 313 42 42 chr12 49243920 49243989 -94542466 - MIR SINE MIR -88 174 106 3638 168 46 1 chr12 49243989 49244684 -94541771 + L1MB7 LINE L1 5454 6179 -5 422 313 42 42 chr12 49244684 49244780 -94541675 - MIR SINE MIR -155 107 9 25 31 0 0 chr12 49244928 49244960 -94541495 + AT_rich Low_complexity Low_complexity 1 32 0 392 333 48 20 chr12 49245059 49245206 -94541249 - L2 LINE L2 -1 3312 3162 314 339 8 16 chr12 49245559 49245683 -94540772 + HERVL LTR ERVL 2307 2429 -3225 1100 288 90 12 chr12 49245688 49246101 -94540354 - LTR16A LTR ERVL -5 445 1 261 349 28 0 chr12 49246101 49246210 -94540245 + HERVL LTR ERVL 2464 2575 -3189 192 321 24 36 chr12 49246222 49246306 -94540149 + MER5B DNA MER1_type 79 161 -17 566 279 164 28 chr12 49246361 49246648 -94539807 + MLT1J LTR MaLR 153 478 -33 444 359 20 34 chr12 49247105 49247403 -94539052 + HERVL LTR ERVL 3396 3689 -2075 1724 107 4 12 chr12 49248995 49249247 -94537208 - AluSc SINE Alu -16 293 44 307 302 142 51 chr12 49249295 49249705 -94536750 - L2 LINE L2 -932 2382 1936 22 0 0 0 chr12 49250892 49250914 -94535541 + AT_rich Low_complexity Low_complexity 1 22 0 2290 109 0 0 chr12 49251559 49251872 -94534583 - AluSq SINE Alu 0 313 1 283 128 58 0 chr12 49253300 49253386 -94533069 + (TA)n Simple_repeat Simple_repeat 2 92 0 417 332 58 17 chr12 49254663 49254955 -94531500 + L2 LINE L2 2227 2530 -784 1030 31 0 0 chr12 49255309 49255436 -94531019 + L1PA4 LINE L1 6026 6152 -3 1972 135 0 3 chr12 49256896 49257178 -94529277 + AluSx SINE Alu 1 281 -31 227 170 0 0 chr12 49257221 49257268 -94529187 - LTR66 LTR ERVL -170 440 394 204 237 0 0 chr12 49257268 49257306 -94529149 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 49258903 49258924 -94527531 + AT_rich Low_complexity Low_complexity 1 21 0 859 103 46 82 chr12 49258992 49259186 -94527269 - L1MA8 LINE L1 -157 6134 5948 521 243 64 17 chr12 49259363 49259536 -94526919 - L1MA10 LINE L1 -9 6325 6145 2264 185 27 59 chr12 49259898 49260422 -94526033 + MER67D LTR ERV1 8 514 0 21 0 0 0 chr12 49262117 49262138 -94524317 + AT_rich Low_complexity Low_complexity 1 21 0 899 102 109 0 chr12 49262138 49262285 -94524170 - L1MA1 LINE L1 0 6302 6140 375 296 32 113 chr12 49262990 49263433 -94523022 + L2 LINE L2 2077 2483 -831 21 36 0 0 chr12 49263830 49263858 -94522597 + AT_rich Low_complexity Low_complexity 1 28 0 210 229 0 0 chr12 49264703 49264751 -94521704 + GA-rich Low_complexity Low_complexity 1 48 0 679 314 52 26 chr12 49265231 49265669 -94520786 + L1PA16 LINE L1 2865 3305 -3544 730 140 0 0 chr12 49265674 49265781 -94520674 + U6 snRNA snRNA 1 107 0 10799 186 15 20 chr12 49265782 49268971 -94517484 + L1PA16 LINE L1 3650 6820 -49 25 51 0 0 chr12 49269091 49269130 -94517325 + AT_rich Low_complexity Low_complexity 1 39 0 1883 140 7 33 chr12 49270802 49271102 -94515353 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr12 49271102 49271131 -94515324 + AT_rich Low_complexity Low_complexity 1 29 0 309 155 0 0 chr12 49271161 49271219 -94515236 + (TA)n Simple_repeat Simple_repeat 2 59 0 680 294 48 16 chr12 49271911 49272159 -94514296 + MIR SINE MIR 7 262 0 1906 130 22 0 chr12 49272458 49272727 -94513728 - AluSx SINE Alu -37 275 1 207 182 0 0 chr12 49273332 49273365 -94513090 + (CA)n Simple_repeat Simple_repeat 1 33 0 728 172 83 12 chr12 49274148 49274197 -94512258 + L1MDa LINE L1 21 65 -6475 1787 157 62 29 chr12 49274197 49274617 -94511838 - Tigger2a DNA MER2_type 0 434 1 728 172 83 12 chr12 49274617 49274736 -94511719 + L1MDa LINE L1 65 201 -6339 2002 110 28 14 chr12 49274738 49275028 -94511427 - AluSx SINE Alu -18 294 1 340 231 59 83 chr12 49275032 49275201 -94511254 - L1M4 LINE L1 -2153 3993 3829 22 0 0 0 chr12 49275484 49275506 -94510949 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr12 49276005 49276040 -94510415 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1514 172 10 20 chr12 49276924 49277220 -94509235 + MER67C LTR ERV1 416 708 -2 25 31 0 0 chr12 49277707 49277739 -94508716 + AT_rich Low_complexity Low_complexity 1 32 0 624 224 92 6 chr12 49277885 49278059 -94508396 + MER53 DNA DNA 1 189 0 394 276 59 35 chr12 49278927 49279097 -94507358 - MER5B DNA MER1_type -1 177 4 30 0 0 0 chr12 49280961 49280991 -94505464 + AT_rich Low_complexity Low_complexity 1 30 0 2189 96 34 0 chr12 49280995 49281288 -94505167 + AluSq SINE Alu 1 303 -10 370 324 153 0 chr12 49281295 49281460 -94504995 - MIR SINE MIR -59 203 13 756 233 192 4 chr12 49281460 49281731 -94504724 - MER5C DNA MER1_type -2 322 1 273 57 0 0 chr12 49283915 49283950 -94502505 + (GGA)n Simple_repeat Simple_repeat 2 36 0 242 209 15 0 chr12 49284276 49284343 -94502112 + L1MD3 LINE L1 7928 7995 0 189 0 0 0 chr12 49284893 49284914 -94501541 + (A)n Simple_repeat Simple_repeat 1 21 0 8252 54 6 9 chr12 49286851 49288668 -94497787 + L1PA5 LINE L1 4337 6151 -3 1418 39 0 11 chr12 49288721 49288753 -94497702 + (GAAA)n Simple_repeat Simple_repeat 1 211 0 1418 39 0 11 chr12 49288753 49288935 -94497520 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3013 155 23 8 chr12 49292404 49292933 -94493522 + Tigger1 DNA MER2_type 1882 2418 0 199 342 13 0 chr12 49294013 49294092 -94492363 - L3 LINE CR1 -151 1426 1347 220 309 98 0 chr12 49294917 49295040 -94491415 - MIR SINE MIR -48 214 80 234 91 0 0 chr12 49345612 49345645 -94440810 + (TGAG)n Simple_repeat Simple_repeat 3 35 0 735 83 0 120 chr12 49346221 49346374 -94440081 - AluSg/x SINE Alu 0 302 166 29 28 0 0 chr12 49346823 49346859 -94439596 + AT_rich Low_complexity Low_complexity 1 36 0 1521 124 0 0 chr12 49347431 49347641 -94438814 + AluSg/x SINE Alu 74 283 -27 306 75 75 0 chr12 49347641 49347721 -94438734 + (TA)n Simple_repeat Simple_repeat 1 86 0 415 265 12 6 chr12 49347886 49348056 -94438399 - AluJo SINE Alu -15 297 127 225 260 0 0 chr12 49348669 49348719 -94437736 + L1MEd LINE L1 97 146 -5973 264 268 63 28 chr12 49349002 49349144 -94437311 + L1MEd LINE L1 709 855 -5264 236 258 31 31 chr12 49349262 49349359 -94437096 + L1M4 LINE L1 3791 3887 -2259 30 45 0 0 chr12 49349370 49349414 -94437041 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr12 49349479 49349517 -94436938 + AT_rich Low_complexity Low_complexity 1 38 0 748 311 54 17 chr12 49349537 49349945 -94436510 + L1M4 LINE L1 4029 4451 -1695 400 259 42 87 chr12 49349956 49350242 -94436213 + L1M4 LINE L1 4541 4813 -1333 322 286 135 51 chr12 49350420 49350598 -94435857 + L1M4 LINE L1 5037 5229 -917 1606 16 0 16 chr12 49350717 49350909 -94435546 - L1PA3 LINE L1 0 6155 5967 25 0 0 0 chr12 49351057 49351082 -94435373 + AT_rich Low_complexity Low_complexity 1 25 0 13842 110 62 14 chr12 49351295 49352756 -94433699 - MER4-int LTR ERV1 -250 6348 4736 2031 120 7 0 chr12 49352756 49353055 -94433400 + AluSg SINE Alu 1 301 -9 13842 110 62 14 chr12 49353055 49353884 -94432571 - MER4-int LTR ERV1 -1862 4736 3948 455 136 421 50 chr12 49353901 49354041 -94432414 - MER4A LTR ERV1 -212 452 261 559 134 21 10 chr12 49354041 49354138 -94432317 - MER4A LTR ERV1 -566 98 1 278 179 34 51 chr12 49354147 49354264 -94432191 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 185 94 31 0 chr12 49354278 49354310 -94432145 + (TATG)n Simple_repeat Simple_repeat 3 35 0 1948 133 0 37 chr12 49355235 49355559 -94430896 - AluJo SINE Alu 0 312 1 261 0 0 0 chr12 49356847 49356876 -94429579 + (A)n Simple_repeat Simple_repeat 1 29 0 1879 221 13 33 chr12 49358018 49358824 -94427631 + L1M1 LINE L1 4939 5735 -565 1672 105 13 0 chr12 49358956 49359185 -94427270 - AluSg SINE Alu -76 234 3 277 371 14 14 chr12 49361425 49361565 -94424890 + MIR SINE MIR 49 188 -74 651 197 3 3 chr12 49361567 49361876 -94424579 + (TA)n Simple_repeat Simple_repeat 1 309 0 421 274 88 127 chr12 49362304 49362611 -94423844 - L2 LINE L2 -7 3265 2971 574 197 60 8 chr12 49364657 49364774 -94421681 - FLAM_C SINE Alu -20 123 1 289 349 46 9 chr12 49365353 49365462 -94420993 - L2 LINE L2 -2 3270 3158 2166 116 7 0 chr12 49365800 49366092 -94420363 + AluJb SINE Alu 2 295 -17 436 187 87 6 chr12 49366981 49367195 -94419260 + L1MB8 LINE L1 5575 5825 -298 477 209 0 52 chr12 49367196 49367311 -94419144 + FAM SINE Alu 1 109 -76 1248 132 14 18 chr12 49367311 49367530 -94418925 - THE1C LTR MaLR -3 372 155 2098 96 3 46 chr12 49367532 49367856 -94418599 + AluSg SINE Alu 1 310 0 944 148 11 56 chr12 49367870 49368082 -94418373 - THE1C LTR MaLR -146 209 1 284 224 0 15 chr12 49368082 49368133 -94418322 + AluS SINE Alu 239 288 -14 1062 185 173 26 chr12 49368133 49368446 -94418009 + L1MB8 LINE L1 5819 6177 -1 223 404 11 0 chr12 49369404 49369498 -94416957 - L2 LINE L2 -26 3246 3152 225 221 15 44 chr12 49369521 49369589 -94416866 + MIR SINE MIR 63 128 -134 255 358 8 33 chr12 49369707 49369827 -94416628 - L3 LINE CR1 -200 1377 1261 590 307 43 35 chr12 49369971 49370202 -94416253 + MIR SINE MIR 30 262 0 361 299 95 7 chr12 49370227 49370374 -94416081 - L3 LINE CR1 -320 1257 1098 253 261 29 0 chr12 49370527 49370596 -94415859 + L1MD3 LINE L1 7692 7762 -233 231 244 64 0 chr12 49370670 49370748 -94415707 + L2 LINE L2 2302 2384 -930 233 318 34 0 chr12 49370785 49370873 -94415582 + (TACGG)n Simple_repeat Simple_repeat 4 94 0 233 222 111 0 chr12 49372225 49372279 -94414176 + L2 LINE L2 3250 3309 -4 464 268 73 7 chr12 49373207 49373360 -94413095 - MIR SINE MIR -62 146 17 22 0 0 0 chr12 49373411 49373433 -94413022 + AT_rich Low_complexity Low_complexity 1 22 0 207 328 112 48 chr12 49374259 49374384 -94412071 - MIR SINE MIR -71 191 59 213 164 0 55 chr12 49374445 49374500 -94411955 + (CACCC)n Simple_repeat Simple_repeat 4 55 0 1917 141 10 13 chr12 49375931 49376243 -94410212 - AluJo SINE Alu -1 311 1 1012 175 27 6 chr12 49376678 49376861 -94409594 - MER5A DNA MER1_type -1 188 2 379 304 159 19 chr12 49377068 49377338 -94409117 + L2 LINE L2 3006 3313 0 342 289 47 82 chr12 49378465 49378721 -94407734 + L1MC/D LINE L1 5571 5817 -1991 1713 180 32 0 chr12 49378731 49379014 -94407441 + AluJo SINE Alu 1 292 -20 26 0 0 0 chr12 49379014 49379040 -94407415 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr12 49379857 49379898 -94406557 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr12 49381179 49381219 -94405236 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr12 49381303 49381333 -94405122 + AT_rich Low_complexity Low_complexity 1 30 0 2525 90 3 0 chr12 49381440 49381785 -94404670 + L1PA10 LINE L1 5697 6042 -126 410 307 49 6 chr12 49383025 49383188 -94403267 + MIR SINE MIR 63 232 -30 201 178 0 0 chr12 49383191 49383236 -94403219 + (CAT)n Simple_repeat Simple_repeat 2 46 0 270 0 0 0 chr12 49383301 49383331 -94403124 + (T)n Simple_repeat Simple_repeat 1 30 0 592 73 20 3 chr12 49383331 49383423 -94403032 + L1P2 LINE L1 5507 5574 -581 204 40 0 0 chr12 49384121 49384146 -94402309 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 222 231 48 77 chr12 49384808 49384912 -94401543 + L2 LINE L2 2764 2864 -450 415 348 68 49 chr12 49385010 49385395 -94401060 + L2 LINE L2 2881 3272 0 21 36 0 0 chr12 49385425 49385453 -94401002 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr12 49388287 49388312 -94398143 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 325 317 42 28 chr12 49389779 49389921 -94396534 + MIR SINE MIR 106 249 -13 189 0 0 0 chr12 49390323 49390344 -94396111 + (A)n Simple_repeat Simple_repeat 1 21 0 1816 138 10 24 chr12 49390657 49390948 -94395507 - AluJo SINE Alu -25 287 1 610 142 25 0 chr12 49391004 49391124 -94395331 + L1MA9 LINE L1 6190 6312 0 2275 89 0 0 chr12 49391476 49391768 -94394687 + AluSc SINE Alu 15 306 -3 5427 174 15 32 chr12 49392050 49392854 -94393601 + L1MA4 LINE L1 4983 5756 -544 1506 165 0 39 chr12 49392854 49393109 -94393346 + AluJo SINE Alu 42 286 -26 5427 174 15 32 chr12 49393109 49393639 -94392816 + L1MA4 LINE L1 5756 6293 -7 413 250 39 106 chr12 49396975 49397183 -94389272 - MIR SINE MIR -56 206 13 457 167 122 86 chr12 49397280 49397501 -94388954 + L1MC5 LINE L1 7701 7929 -32 335 309 140 57 chr12 49398022 49398459 -94387996 + L1M4 LINE L1 4909 5381 -765 368 295 162 15 chr12 49398568 49398839 -94387616 + L1ME3A LINE L1 4413 4723 -1423 333 331 211 7 chr12 49398955 49399097 -94387358 - MER91A DNA MER1_type -6 190 20 274 277 125 45 chr12 49399122 49399393 -94387062 + L1ME3A LINE L1 4748 4996 -1150 2119 114 7 13 chr12 49399393 49399699 -94386756 + AluSx SINE Alu 1 304 -8 274 277 125 45 chr12 49399699 49399755 -94386700 + L1ME3A LINE L1 4996 5046 -1100 1634 202 3 3 chr12 49399755 49400062 -94386393 + AluJo SINE Alu 1 307 -5 274 277 125 45 chr12 49400062 49400260 -94386195 + L1ME3A LINE L1 5046 5316 -830 1964 137 7 0 chr12 49400286 49400570 -94385885 + AluSx SINE Alu 1 286 -26 416 128 43 0 chr12 49400570 49400659 -94385796 + (TA)n Simple_repeat Simple_repeat 2 94 0 851 291 56 39 chr12 49400680 49401144 -94385311 + L1ME3A LINE L1 5370 5841 -329 1514 139 49 21 chr12 49401765 49402053 -94384402 - Tigger2 DNA MER2_type -127 2591 2296 299 184 0 0 chr12 49402062 49402111 -94384344 + MER8 DNA MER2_type 191 239 0 244 289 135 10 chr12 49402126 49402230 -94384225 + L2 LINE L2 3197 3313 0 220 248 143 57 chr12 49402236 49402341 -94384114 - MIR SINE MIR -75 133 20 267 296 232 0 chr12 49403316 49403441 -94383014 - L2 LINE L2 0 3272 3119 244 282 233 0 chr12 49404558 49404661 -94381794 - L2 LINE L2 -8 3264 3138 1111 235 41 26 chr12 49404876 49405242 -94381213 - LTR16A LTR ERVL 0 450 26 455 330 80 70 chr12 49405242 49405858 -94380597 - L2 LINE L2 -433 2881 2260 22 0 0 0 chr12 49405888 49405910 -94380545 + AT_rich Low_complexity Low_complexity 1 22 0 1180 173 36 161 chr12 49405987 49406404 -94380051 - MLT1A1 LTR MaLR 0 365 1 1078 231 112 32 chr12 49406603 49406941 -94379514 + MLT1A1 LTR MaLR 1 365 0 875 149 6 54 chr12 49406944 49407161 -94379294 - MER4B LTR ERV1 -90 574 387 30 69 0 0 chr12 49407349 49407407 -94379048 + AT_rich Low_complexity Low_complexity 1 58 0 4271 174 28 47 chr12 49407572 49408591 -94377864 - L1 LINE L1 -2057 4089 3091 430 213 27 0 chr12 49408607 49408682 -94377773 - AluJ/FLAM SINE Alu -225 77 1 183 42 0 0 chr12 49408687 49408711 -94377744 + (T)n Simple_repeat Simple_repeat 1 24 0 1697 186 23 13 chr12 49408946 49409253 -94377202 - AluJo SINE Alu -2 310 1 230 215 0 31 chr12 49410066 49410131 -94376324 - AluJ/monomer SINE Alu -2 300 238 * 2028 158 9 75 chr12 49410117 49410247 -94376208 - Tigger2a DNA MER2_type -2296 412 275 1790 160 3 24 chr12 49410247 49410541 -94375914 + AluJo SINE Alu 3 290 -22 2028 158 9 75 chr12 49410541 49410839 -94375616 - Tigger2a DNA MER2_type -2433 275 12 433 191 0 0 chr12 49410983 49411067 -94375388 + AluJ/FRAM SINE Alu 225 308 -4 192 341 49 0 chr12 49411136 49411218 -94375237 - MIR SINE MIR -175 87 2 201 288 17 0 chr12 49411457 49411516 -94374939 + L2 LINE L2 1848 1907 -1407 204 244 378 0 chr12 49411576 49411666 -94374789 + MIR SINE MIR 95 218 -44 328 364 48 15 chr12 49411697 49411903 -94374552 + L2 LINE L2 1948 2160 -1154 219 167 0 0 chr12 49412512 49412554 -94373901 + CT-rich Low_complexity Low_complexity 1 42 0 351 0 0 0 chr12 49412554 49412593 -94373862 + (TG)n Simple_repeat Simple_repeat 2 40 0 1091 173 35 5 chr12 49412596 49412793 -94373662 + MLT1B LTR MaLR 188 390 0 220 186 47 0 chr12 49412794 49412837 -94373618 + MIR SINE MIR 170 214 -48 228 306 122 20 chr12 49412919 49413066 -94373389 + L2 LINE L2 3151 3312 -1 615 113 21 10 chr12 49414310 49414407 -94372048 + MER4A LTR ERV1 1 98 -566 1580 159 161 75 chr12 49414407 49414779 -94371676 + MER4A LTR ERV1 261 664 0 2182 94 74 34 chr12 49414779 49415218 -94371237 + MER4A-int LTR ERV1 43 563 -6035 315 0 0 0 chr12 49415228 49415263 -94371192 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1058 252 33 33 chr12 49415443 49415717 -94370738 + MER4A-int LTR ERV1 1894 2167 -4164 5420 117 88 44 chr12 49415759 49416720 -94369735 + MER4A-int LTR ERV1 189 1192 -5566 15348 127 82 65 chr12 49416731 49417923 -94368532 + MER4A-int LTR ERV1 1756 2926 -3672 2427 52 0 7 chr12 49417923 49418212 -94368243 + AluY SINE Alu 1 287 -24 15348 127 82 65 chr12 49418212 49420442 -94366013 + MER4A-int LTR ERV1 2926 5915 -683 1930 173 0 0 chr12 49420442 49420749 -94365706 + AluSx SINE Alu 1 307 -5 15348 127 82 65 chr12 49420749 49421445 -94365010 + MER4A-int LTR ERV1 5915 6598 0 565 134 21 10 chr12 49421446 49421543 -94364912 + MER4A LTR ERV1 1 98 -566 1663 128 151 120 chr12 49421543 49421935 -94364520 + MER4A LTR ERV1 261 664 0 381 294 37 9 chr12 49421952 49422061 -94364394 - MIR3 SINE MIR -41 167 56 1629 164 33 4 chr12 49423447 49423721 -94362734 - AluJb SINE Alu -9 303 22 261 122 0 0 chr12 49423991 49424032 -94362423 + L2 LINE L2 3271 3311 -2 371 280 188 19 chr12 49424436 49424643 -94361812 + MIR SINE MIR 20 261 -1 26 0 0 0 chr12 49424644 49424670 -94361785 + AT_rich Low_complexity Low_complexity 1 26 0 4777 125 88 26 chr12 49424798 49425648 -94360807 - MER4D LTR ERV1 0 903 1 376 205 31 177 chr12 49425682 49425936 -94360519 - L1MC4 LINE L1 -18 8024 7808 1690 168 7 7 chr12 49426474 49426812 -94359643 - AluJb SINE Alu 0 346 9 242 282 37 25 chr12 49427022 49427116 -94359339 + MIR SINE MIR 57 150 -72 476 308 39 19 chr12 49427165 49427321 -94359134 + MIR SINE MIR 16 174 -88 3412 176 26 53 chr12 49427536 49427759 -94358696 + MER72 LTR ERV1 1 228 -494 2341 70 0 26 chr12 49427759 49428072 -94358383 - AluY SINE Alu -3 308 4 3412 176 26 53 chr12 49428072 49428590 -94357865 + MER72 LTR ERV1 228 722 0 4682 100 33 0 chr12 49428654 49429321 -94357134 - LTR8 LTR ERV1 0 691 3 1541 147 44 27 chr12 49429321 49429614 -94356841 + AluJo SINE Alu 10 307 -5 22 56 0 0 chr12 49429617 49429653 -94356802 + AT_rich Low_complexity Low_complexity 1 36 0 948 177 41 34 chr12 49429786 49430052 -94356403 - LTR37B LTR ERV1 0 468 201 1745 147 3 42 chr12 49430161 49430474 -94355981 + AluSx SINE Alu 1 301 -11 263 258 0 0 chr12 49430524 49430590 -94355865 - LTR37B LTR ERV1 -396 72 7 1477 127 0 0 chr12 49431603 49431808 -94354647 - AluSg/x SINE Alu -23 287 83 259 301 53 26 chr12 49431808 49431916 -94354539 - MLT1C LTR MaLR -85 384 273 332 104 0 0 chr12 49431916 49431964 -94354491 + MER57A LTR ERV1 3 50 -353 2379 72 7 0 chr12 49432009 49432315 -94354140 + AluY SINE Alu 1 308 -3 570 155 54 143 chr12 49432324 49432492 -94353963 + LTR8A LTR ERV1 569 721 -6 1868 189 3 27 chr12 49432495 49432866 -94353589 + MER57A LTR ERV1 42 403 0 954 218 24 14 chr12 49432867 49433078 -94353377 - MLT1C LTR MaLR -196 271 59 606 327 54 21 chr12 49433218 49433640 -94352815 + L2 LINE L2 2623 3052 -261 1690 192 31 68 chr12 49434133 49434258 -94352197 + MLT1C LTR MaLR 1 129 -338 2046 109 4 4 chr12 49434258 49434563 -94351892 + AluSc SINE Alu 7 311 0 1690 192 31 68 chr12 49434563 49434921 -94351534 + MLT1C LTR MaLR 129 467 0 201 254 0 0 chr12 49435780 49435839 -94350616 + (TTA)n Simple_repeat Simple_repeat 2 60 0 649 286 121 0 chr12 49435855 49436061 -94350394 - MIR SINE MIR -30 232 2 2261 107 7 0 chr12 49436458 49436768 -94349687 - AluSx SINE Alu 0 312 1 2612 56 0 0 chr12 49436864 49437170 -94349285 - AluY SINE Alu -3 308 3 2284 210 49 18 chr12 49438025 49438573 -94347882 - MLT1F1 LTR MaLR 0 567 3 237 346 13 0 chr12 49438875 49438953 -94347502 + L2 LINE L2 3193 3271 -1 448 248 128 0 chr12 49439122 49439255 -94347200 - L2 LINE L2 -2445 869 720 239 310 26 0 chr12 49439288 49439401 -94347054 + HAL1 LINE L1 1565 1680 -827 29 0 0 0 chr12 49439523 49439552 -94346903 + AT_rich Low_complexity Low_complexity 1 29 0 280 212 76 61 chr12 49439742 49439874 -94346581 + HAL1b LINE L1 750 883 -465 1933 143 7 0 chr12 49440404 49440698 -94345757 - AluSx SINE Alu -16 296 1 24 67 0 0 chr12 49441067 49441112 -94345343 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr12 49441925 49441964 -94344491 + AT_rich Low_complexity Low_complexity 1 39 0 617 228 16 0 chr12 49442757 49442884 -94343571 + FLAM_C SINE Alu 1 129 -14 376 21 0 0 chr12 49443284 49443331 -94343124 - MADE1 DNA Mariner 0 80 34 310 310 241 7 chr12 49443656 49443801 -94342654 - MER5A DNA MER1_type 0 189 11 761 150 0 0 chr12 49444037 49444170 -94342285 + MER4-int LTR ERV1 2362 2494 -4104 1025 196 147 0 chr12 49444171 49444395 -94342060 - LTR8 LTR ERV1 -434 257 1 2684 118 68 32 chr12 49444399 49444956 -94341499 + MER4-int LTR ERV1 2742 3318 -3280 723 119 7 53 chr12 49444962 49445113 -94341342 + MER4-int LTR ERV1 3919 4062 -2536 1120 121 12 6 chr12 49445113 49445279 -94341176 - AluSx SINE Alu -145 167 1 596 98 0 0 chr12 49445374 49445456 -94340999 - AluSg/x SINE Alu -13 299 218 14822 103 57 22 chr12 49445456 49446864 -94339591 + MER4-int LTR ERV1 4070 5598 -1000 769 208 0 0 chr12 49446864 49446994 -94339461 + AluJ SINE Alu 1 130 -172 14822 103 57 22 chr12 49446994 49448029 -94338426 + MER4-int LTR ERV1 5598 6596 -2 596 124 21 10 chr12 49448037 49448134 -94338321 + MER4A LTR ERV1 1 98 -566 1614 148 8 77 chr12 49448134 49448505 -94337950 + MER4A LTR ERV1 261 664 0 247 189 102 55 chr12 49448506 49448566 -94337889 + L1ME4a LINE L1 5959 6015 -106 631 174 0 30 chr12 49448566 49448698 -94337757 - FLAM_C SINE Alu -5 128 1 247 189 102 55 chr12 49448698 49448764 -94337691 + L1ME4a LINE L1 6015 6091 -30 180 179 0 0 chr12 49449576 49449615 -94336840 + A-rich Low_complexity Low_complexity 2 40 0 344 265 98 0 chr12 49450052 49450154 -94336301 + MLT1H LTR MaLR 211 322 -227 185 347 40 40 chr12 49450770 49450894 -94335561 + L2 LINE L2 3141 3264 -8 356 341 54 36 chr12 49452031 49452198 -94334257 + MIR SINE MIR 8 177 -85 180 340 140 0 chr12 49453244 49453344 -94333111 + MIR SINE MIR 18 131 -131 207 0 0 0 chr12 49453775 49453798 -94332657 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 782 168 0 14 chr12 49454901 49455044 -94331411 + FLAM_C SINE Alu 1 141 -2 909 186 0 19 chr12 49455224 49455385 -94331070 + AluJb SINE Alu 136 293 -19 1656 114 49 0 chr12 49455740 49456003 -94330452 + L1MB3 LINE L1 5906 6181 -2 3003 189 127 108 chr12 49457348 49457907 -94328548 - L1MC3 LINE L1 0 7785 7238 283 170 0 19 chr12 49457907 49457960 -94328495 - MLT1F1 LTR MaLR -449 118 67 3003 189 127 108 chr12 49457960 49458518 -94327937 - L1MC3 LINE L1 -547 7238 6595 485 284 94 69 chr12 49458824 49459272 -94327183 + MLT1J LTR MaLR 1 459 -52 431 319 150 9 chr12 49459809 49460022 -94326433 - MIR SINE MIR 0 262 20 571 122 304 0 chr12 49462052 49462167 -94324288 - FRAM SINE Alu -20 156 7 689 274 130 56 chr12 49462403 49462708 -94323747 - L1ME LINE L1 -352 5810 5529 207 0 0 0 chr12 49462708 49462731 -94323724 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 689 274 130 56 chr12 49462731 49463155 -94323300 - L1ME LINE L1 -633 5529 5027 2010 233 23 30 chr12 49463183 49463707 -94322748 + MLT1F LTR MaLR 1 520 -22 568 302 113 24 chr12 49463762 49464259 -94322196 - L1ME LINE L1 -1202 4944 4404 204 158 0 0 chr12 49464387 49464425 -94322030 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 570 326 41 102 chr12 49465423 49465911 -94320544 + L2 LINE L2 2815 3272 0 318 257 62 0 chr12 49466271 49466384 -94320071 - MIR SINE MIR -57 205 86 3808 199 43 10 chr12 49466434 49467360 -94319095 - Charlie1 DNA MER1_type -141 2620 1564 211 349 28 19 chr12 49467519 49467625 -94318830 - MER5A DNA MER1_type -45 144 38 260 162 0 118 chr12 49467639 49467707 -94318748 + L1MB8 LINE L1 6003 6062 -116 494 160 28 0 chr12 49468212 49468318 -94318137 - L1MB3 LINE L1 0 6183 6075 21 57 0 0 chr12 49468494 49468529 -94317926 + AT_rich Low_complexity Low_complexity 1 35 0 204 328 144 8 chr12 49469232 49469357 -94317098 + L2 LINE L2 2607 2748 -566 318 294 103 24 chr12 49469723 49469849 -94316606 + L2 LINE L2 3137 3272 0 4339 82 50 14 chr12 49470609 49471266 -94315189 + L1MA1 LINE L1 5622 6302 0 273 127 0 109 chr12 49471361 49471416 -94315039 - FLAM SINE Alu -4 129 81 1641 168 3 18 chr12 49471494 49471801 -94314654 - AluJb SINE Alu 0 303 1 22 0 0 0 chr12 49471999 49472021 -94314434 + AT_rich Low_complexity Low_complexity 1 22 0 204 290 29 0 chr12 49472307 49472376 -94314079 - L2 LINE L2 -10 3303 3233 32 43 0 0 chr12 49472834 49472880 -94313575 + AT_rich Low_complexity Low_complexity 1 46 0 290 198 66 28 chr12 49472881 49472987 -94313468 + L1MC5 LINE L1 7383 7492 -469 25 0 0 0 chr12 49473051 49473076 -94313379 + AT_rich Low_complexity Low_complexity 1 25 0 628 180 110 40 chr12 49473106 49473406 -94313049 + L1MC5 LINE L1 7462 7782 -179 2093 124 0 0 chr12 49473520 49473810 -94312645 - AluSx SINE Alu -22 290 1 278 262 161 52 chr12 49473879 49474127 -94312328 - LTR16C LTR ERVL -43 448 174 318 314 18 40 chr12 49474511 49474734 -94311721 - MERVL LTR ERVL -177 5308 5091 2568 56 0 0 chr12 49474939 49475243 -94311212 + AluY SINE Alu 1 304 -7 203 237 32 32 chr12 49477888 49477981 -94308474 + (TA)n Simple_repeat Simple_repeat 1 93 0 4127 99 3 88 chr12 49478016 49478740 -94307715 - MER4A LTR ERV1 0 664 3 465 217 33 51 chr12 49478962 49479132 -94307323 + MER69A DNA AcHobo 14 177 0 288 268 0 0 chr12 49479147 49479218 -94307237 - MER69A DNA AcHobo -105 72 2 23 33 0 0 chr12 49481244 49481274 -94305181 + AT_rich Low_complexity Low_complexity 1 30 0 779 130 14 55 chr12 49481519 49481665 -94304790 - AluJo SINE Alu -172 140 1 1531 168 0 25 chr12 49481803 49482077 -94304378 + AluJo SINE Alu 16 282 -30 237 261 45 0 chr12 49482081 49482169 -94304286 + (TAAA)n Simple_repeat Simple_repeat 1 92 0 2030 112 7 33 chr12 49482929 49483233 -94303222 - AluSx SINE Alu -16 296 1 1723 163 3 7 chr12 49483241 49483523 -94302932 - AluJo SINE Alu -25 287 7 290 304 38 33 chr12 49484423 49484607 -94301848 - MLT1J LTR MaLR 0 511 327 2039 120 13 7 chr12 49484751 49485051 -94301404 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr12 49485057 49485080 -94301375 + (CAA)n Simple_repeat Simple_repeat 1 23 0 646 171 0 0 chr12 49485080 49485197 -94301258 - L1MA10 LINE L1 -7 6327 6211 1689 166 14 7 chr12 49485362 49485640 -94300815 + AluJb SINE Alu 7 286 -26 1853 248 23 60 chr12 49485647 49486423 -94300032 - L1ME1 LINE L1 -245 5990 5242 * 4553 209 37 31 chr12 49486422 49488375 -94298080 + L1MD1 LINE L1 4252 6214 -28 229 276 0 11 chr12 49488388 49488475 -94297980 - L1ME1 LINE L1 -967 5248 5163 1347 174 18 28 chr12 49488491 49488773 -94297682 - AluSx SINE Alu -28 284 6 944 231 0 5 chr12 49488777 49488993 -94297462 - L1ME1 LINE L1 -1047 5168 4954 3112 255 81 25 chr12 49489061 49490273 -94296182 - L1ME1 LINE L1 -2354 3861 2582 1328 146 0 15 chr12 49490339 49490544 -94295911 - AluJb SINE Alu -25 287 86 395 208 111 14 chr12 49490544 49490688 -94295767 - L1ME1 LINE L1 -3673 2542 2385 2306 153 44 0 chr12 49490727 49491093 -94295362 + MSTA LTR MaLR 1 382 -46 1375 189 29 29 chr12 49491112 49491393 -94295062 - AluJo SINE Alu -29 283 3 483 225 17 90 chr12 49491413 49491912 -94294543 - L1ME1 LINE L1 -3824 2391 1884 23 68 0 0 chr12 49491912 49491956 -94294499 + AT_rich Low_complexity Low_complexity 1 44 0 911 322 53 42 chr12 49491969 49492425 -94294030 - LTR67 LTR ERVL -95 462 2 22 0 0 0 chr12 49493602 49493624 -94292831 + AT_rich Low_complexity Low_complexity 1 22 0 298 228 54 43 chr12 49494083 49494175 -94292280 - L2 LINE L2 -12 3260 3168 1666 140 63 71 chr12 49494428 49494806 -94291649 - THE1C LTR MaLR 0 375 1 731 186 5 108 chr12 49495375 49495569 -94290886 + AluJb SINE Alu 138 311 -1 401 314 76 22 chr12 49496023 49496246 -94290209 + MLT1L LTR MaLR 350 584 -31 361 234 83 2 chr12 49496276 49496387 -94290068 - MIR SINE MIR -69 139 38 2219 130 7 0 chr12 49497386 49497693 -94288762 - AluSx SINE Alu -1 311 3 190 336 55 31 chr12 49497698 49497826 -94288629 + L2 LINE L2 1898 2028 -1286 464 301 98 80 chr12 49497875 49498155 -94288300 + MLT1K LTR MaLR 27 300 -288 1897 161 148 3 chr12 49498155 49498527 -94287928 - MSTB LTR MaLR 0 426 1 464 301 98 80 chr12 49498527 49498787 -94287668 + MLT1K LTR MaLR 300 577 -11 2369 71 3 0 chr12 49499412 49499706 -94286749 - AluSg SINE Alu -15 295 1 937 75 0 0 chr12 49500506 49500649 -94285806 + AluSg/x SINE Alu 164 306 0 348 297 139 78 chr12 49501450 49502424 -94284031 - L1M2 LINE L1 -5490 1359 468 266 191 319 21 chr12 49504552 49504646 -94281809 + L2 LINE L2 3192 3313 0 249 316 115 14 chr12 49504801 49504940 -94281515 - L2 LINE L2 -2 3311 3159 245 232 14 14 chr12 49505116 49505185 -94281270 - MIR SINE MIR -15 247 179 2438 90 0 3 chr12 49506112 49506424 -94280031 - AluSq SINE Alu -2 311 1 690 288 50 5 chr12 49508294 49508492 -94277963 - MIR SINE MIR -46 216 10 189 0 0 0 chr12 49508495 49508516 -94277939 + (CTCA)n Simple_repeat Simple_repeat 2 22 0 1696 166 75 8 chr12 49508595 49508957 -94277498 - L1MB2 LINE L1 -1 6170 5785 321 308 0 22 chr12 49508967 49509058 -94277397 + L1MC4 LINE L1 6614 6702 -1340 183 80 0 0 chr12 49509059 49509084 -94277371 + (TA)n Simple_repeat Simple_repeat 2 26 0 2621 169 31 38 chr12 49509088 49509740 -94276715 - L1MB2 LINE L1 -384 5787 5133 2177 70 50 33 chr12 49510877 49511179 -94275276 + AluY SINE Alu 1 307 -4 2813 274 165 16 chr12 49512087 49513728 -94272727 + L2 LINE L2 1422 3298 -15 267 280 180 0 chr12 49513772 49513872 -94272583 + L3 LINE CR1 1455 1572 -5 222 330 0 54 chr12 49515142 49515254 -94271201 + MIR SINE MIR 157 262 0 1895 137 81 0 chr12 49515855 49516177 -94270278 + MER7A DNA MER2_type 1 346 0 478 340 70 53 chr12 49516642 49516998 -94269457 + L3 LINE CR1 74 435 -1142 277 341 52 7 chr12 49517207 49517342 -94269113 + L3 LINE CR1 682 822 -755 261 216 20 0 chr12 49519042 49519093 -94267362 + MIR SINE MIR 201 252 -10 315 306 93 37 chr12 49519431 49519539 -94266916 + L2 LINE L2 3159 3272 0 21 0 0 0 chr12 49520736 49520757 -94265698 + AT_rich Low_complexity Low_complexity 1 21 0 1729 108 139 0 chr12 49520969 49521227 -94265228 + AluSg SINE Alu 1 294 -6 310 358 123 12 chr12 49521236 49521398 -94265057 + MIR3 SINE MIR 16 195 -13 3115 178 77 90 chr12 49521486 49522357 -94264098 - MER21B LTR ERV1 -3 860 1 363 302 56 43 chr12 49523155 49523469 -94262986 + L1ME LINE L1 57 623 -5907 296 278 19 19 chr12 49523835 49523943 -94262512 + L1ME LINE L1 807 914 -5616 2343 272 65 26 chr12 49524042 49524692 -94261763 + L1PA13 LINE L1 1 675 -6112 300 292 53 7 chr12 49524700 49524838 -94261617 + L1ME LINE L1 70 307 -6236 15280 219 35 15 chr12 49524914 49526414 -94260041 + L1PA15 LINE L1 1263 2732 -4084 2072 134 0 3 chr12 49526414 49526712 -94259743 + AluSx SINE Alu 1 297 -15 15280 219 35 15 chr12 49526712 49526946 -94259509 + L1PA15 LINE L1 2732 2960 -3856 1993 123 14 10 chr12 49526946 49527238 -94259217 + AluSx SINE Alu 3 295 -17 15280 219 35 15 chr12 49527238 49530916 -94255539 + L1PA15 LINE L1 2960 6775 -41 782 248 105 66 chr12 49530937 49531562 -94254893 + L1ME LINE L1 1039 1704 -4836 7867 226 87 37 chr12 49531573 49532639 -94253816 + L1MCa LINE L1 35 1047 -5379 1630 207 0 3 chr12 49532639 49532939 -94253516 + AluJo SINE Alu 1 299 -13 7867 226 87 37 chr12 49532939 49535796 -94250659 + L1MCa LINE L1 1047 4158 -2268 271 167 46 0 chr12 49535814 49535875 -94250580 + FLAM_A SINE Alu 72 122 -11 298 157 133 24 chr12 49535882 49535965 -94250490 + L1MCa LINE L1 5022 5113 -1313 329 189 0 0 chr12 49535966 49536019 -94250436 - MER20 DNA MER1_type -74 145 93 1983 137 7 3 chr12 49537752 49538036 -94248419 - AluSx SINE Alu -26 286 2 1537 90 5 0 chr12 49538295 49538516 -94247939 - AluSg/x SINE Alu 0 301 80 268 362 149 30 chr12 49538651 49539013 -94247442 + L2 LINE L2 2866 3270 -2 183 357 71 40 chr12 49540432 49540558 -94245897 - L2 LINE L2 -509 2805 2676 958 133 0 0 chr12 49540696 49540824 -94245631 + AluSq/x SINE Alu 4 131 -182 234 314 0 35 chr12 49540845 49540931 -94245524 + MIR SINE MIR 108 190 -72 2675 150 70 2 chr12 49541098 49541599 -94244856 + L1MB8 LINE L1 5399 5933 -245 430 284 7 61 chr12 49542013 49542161 -94244294 + MIR SINE MIR 51 190 -72 270 397 22 28 chr12 49542809 49542988 -94243467 + L2 LINE L2 1159 1336 -1978 518 316 114 5 chr12 49543143 49543336 -94243119 - MIR SINE MIR -12 250 37 24 32 0 0 chr12 49543555 49543586 -94242869 + AT_rich Low_complexity Low_complexity 1 31 0 2346 111 0 0 chr12 49543975 49544282 -94242173 - AluSx SINE Alu -3 309 3 205 305 126 21 chr12 49544326 49544421 -94242034 + L2 LINE L2 3197 3301 -12 194 319 44 69 chr12 49545909 49546069 -94240386 - MER5A DNA MER1_type 0 189 34 * 283 317 29 19 chr12 49545984 49546088 -94240367 + MER5A DNA MER1_type 81 185 -4 215 315 280 28 chr12 49547663 49547806 -94238649 - MIR SINE MIR -56 206 28 960 253 68 0 chr12 49547837 49548074 -94238381 + MIR SINE MIR 10 262 0 381 329 94 51 chr12 49548471 49549028 -94237427 - L2 LINE L2 0 3272 2653 1438 175 0 25 chr12 49551119 49551399 -94235056 + AluJo SINE Alu 26 298 -14 1143 163 5 37 chr12 49551889 49552104 -94234351 + AluJo SINE Alu 94 301 -11 199 286 55 22 chr12 49552185 49552276 -94234179 - MIR SINE MIR -61 147 54 21 0 0 0 chr12 49553158 49553179 -94233276 + AT_rich Low_complexity Low_complexity 1 21 0 335 314 131 11 chr12 49553349 49553524 -94232931 + MIR SINE MIR 62 257 -5 1830 150 7 28 chr12 49553702 49554008 -94232447 - AluJb SINE Alu 0 301 2 264 230 46 0 chr12 49554978 49555051 -94231404 + (TA)n Simple_repeat Simple_repeat 1 80 -11 1603 192 0 17 chr12 49555051 49555343 -94231112 - AluJo SINE Alu -25 287 1 264 230 46 0 chr12 49555343 49555356 -94231099 + (TA)n Simple_repeat Simple_repeat 80 91 0 685 292 63 60 chr12 49557147 49557578 -94228877 - L1M4 LINE L1 -1156 5059 4628 1000 221 0 19 chr12 49557578 49557786 -94228669 + MER2 DNA MER2_type 1 204 -141 535 316 103 42 chr12 49557788 49558390 -94228065 - L1MEc LINE L1 -3699 2516 1914 253 260 126 31 chr12 49558569 49558696 -94227759 - L1MEc LINE L1 -4753 1643 1505 465 62 0 0 chr12 49559166 49559231 -94227224 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 2041 171 110 78 chr12 49559233 49559743 -94226712 + MER21A LTR ERV1 19 544 -387 745 190 35 0 chr12 49559846 49559988 -94226467 + MER21A LTR ERV1 528 674 -257 263 68 114 0 chr12 49559990 49560034 -94226421 + MER21A LTR ERV1 876 924 -7 225 169 17 34 chr12 49560046 49560105 -94226350 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 435 19 0 0 chr12 49561329 49561381 -94225074 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr12 49562024 49562054 -94224401 + AT_rich Low_complexity Low_complexity 1 30 0 725 108 0 0 chr12 49562414 49562525 -94223930 - AluY SINE Alu 0 311 201 207 133 0 0 chr12 49563401 49563446 -94223009 + (T)n Simple_repeat Simple_repeat 1 45 0 333 225 108 8 chr12 49563622 49563742 -94222713 + L1ME4a LINE L1 5963 6094 -27 25 31 0 0 chr12 49565124 49565156 -94221299 + AT_rich Low_complexity Low_complexity 1 32 0 224 287 84 49 chr12 49565967 49566110 -94220345 + MIR3 SINE MIR 39 186 -22 990 121 0 7 chr12 49566119 49566268 -94220187 - AluSc SINE Alu -7 302 155 2814 255 86 59 chr12 49566368 49566923 -94219532 + L1ME2 LINE L1 2021 2559 -3656 412 176 66 0 chr12 49566923 49567014 -94219441 + L1MB3 LINE L1 6086 6182 -1 2814 255 86 59 chr12 49567014 49567231 -94219224 + L1ME2 LINE L1 2559 2769 -3446 1961 133 40 7 chr12 49567231 49567532 -94218923 - AluJb SINE Alu -1 311 1 2814 255 86 59 chr12 49567532 49568340 -94218115 + L1ME2 LINE L1 2769 3664 -2551 1626 181 0 38 chr12 49568340 49568654 -94217801 - AluJb SINE Alu -10 302 1 2814 255 86 59 chr12 49568654 49569189 -94217266 + L1ME2 LINE L1 3664 4183 -2032 587 233 97 0 chr12 49569197 49569373 -94217082 + L1ME2 LINE L1 4699 4891 -1324 * 1141 232 53 10 chr12 49569368 49569670 -94216785 + L1ME2 LINE L1 5909 6223 -10 188 299 65 26 chr12 49569866 49569943 -94216512 + L2 LINE L2 3149 3228 -44 225 333 0 15 chr12 49571045 49571111 -94215344 + L2 LINE L2 3204 3268 -4 626 276 116 0 chr12 49572785 49572966 -94213489 + MIR SINE MIR 35 236 -26 582 207 39 62 chr12 49573795 49573974 -94212481 + MER5B DNA MER1_type 4 178 0 180 309 0 0 chr12 49574401 49574443 -94212012 - MIR SINE MIR -71 191 150 2124 112 0 0 chr12 49574470 49574748 -94211707 + AluSg SINE Alu 1 278 -32 183 42 0 0 chr12 49574748 49574772 -94211683 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 240 200 0 0 chr12 49575211 49575266 -94211189 + CT-rich Low_complexity Low_complexity 2 56 0 189 362 64 11 chr12 49576604 49576698 -94209757 - MIR3 SINE MIR -2 206 108 293 247 21 0 chr12 49577761 49577858 -94208597 + (TA)n Simple_repeat Simple_repeat 2 100 0 2354 94 0 0 chr12 49578895 49579193 -94207262 - AluSx SINE Alu -14 298 1 24 67 0 0 chr12 49579308 49579353 -94207102 + AT_rich Low_complexity Low_complexity 1 45 0 688 273 154 24 chr12 49581243 49581573 -94204882 - L2 LINE L2 -5 3308 2936 2041 132 7 3 chr12 49583141 49583436 -94203019 - AluSx SINE Alu -16 296 1 1652 144 93 34 chr12 49585414 49585768 -94200687 - THE1C LTR MaLR 0 375 1 595 202 53 140 chr12 49587645 49587888 -94198567 - MER58A DNA MER1_type -1 223 2 249 159 0 0 chr12 49587968 49588012 -94198443 + T-rich Low_complexity Low_complexity 1 44 0 409 141 0 0 chr12 49588459 49588523 -94197932 - MER92C LTR ERV1 0 554 491 222 282 13 64 chr12 49588732 49588810 -94197645 + L2 LINE L2 3187 3260 -12 398 277 39 68 chr12 49590014 49590220 -94196235 - MIR SINE MIR -14 248 49 229 304 154 10 chr12 49590243 49590444 -94196011 - L2 LINE L2 -83 3230 3001 2134 121 3 7 chr12 49591201 49591498 -94194957 + AluSp SINE Alu 6 301 -12 217 319 75 38 chr12 49592097 49592257 -94194198 + MIR SINE MIR 91 256 -6 747 229 104 10 chr12 49592454 49592646 -94193809 + MIR SINE MIR 32 241 -21 215 260 0 0 chr12 49592617 49592667 -94193788 + L2 LINE L2 3258 3307 -6 * 828 216 24 0 chr12 49594034 49594201 -94192254 + MER45A DNA AcHobo 1 171 -7 1378 126 0 86 chr12 49594260 49594515 -94191940 + L1PA16 LINE L1 5930 6162 -4 846 192 67 39 chr12 49594618 49594826 -94191629 + MER20 DNA MER1_type 6 219 0 1739 184 0 19 chr12 49596255 49596570 -94189885 + AluJo SINE Alu 2 310 -2 540 295 68 0 chr12 49596990 49597180 -94189275 - L1ME3A LINE L1 -341 5829 5627 2119 114 0 20 chr12 49597357 49597663 -94188792 - AluY SINE Alu -11 300 1 400 268 137 32 chr12 49598163 49598353 -94188102 - MIR SINE MIR -7 255 46 498 349 16 23 chr12 49599470 49599728 -94186727 - MIR SINE MIR -2 260 5 286 187 415 0 chr12 49600002 49600125 -94186330 - MER5B DNA MER1_type -2 176 3 506 234 0 0 chr12 49600138 49600232 -94186223 + MER2 DNA MER2_type 8 101 -244 747 234 38 16 chr12 49600265 49600449 -94186006 - MER5A DNA MER1_type 0 189 2 1968 132 51 31 chr12 49600935 49601290 -94185165 + Tigger2a DNA MER2_type 5 366 -68 342 271 0 21 chr12 49601311 49601407 -94185048 + MSTD LTR MaLR 270 363 -33 1185 168 0 45 chr12 49601407 49601504 -94184951 + MER2 DNA MER2_type 1 101 -244 2090 137 3 0 chr12 49601504 49601804 -94184651 + AluSq SINE Alu 1 301 -12 1185 168 0 45 chr12 49601804 49601926 -94184529 + MER2 DNA MER2_type 101 210 -135 4138 50 0 2 chr12 49602061 49602581 -94183874 + L1PA5 LINE L1 5623 6141 -13 477 0 0 0 chr12 49602585 49602638 -94183817 + (TA)n Simple_repeat Simple_repeat 2 54 0 201 147 0 0 chr12 49602641 49602675 -94183780 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2549 109 2 48 chr12 49602956 49603349 -94183106 + THE1C LTR MaLR 1 375 0 319 200 11 11 chr12 49605269 49605364 -94181091 + (TA)n Simple_repeat Simple_repeat 2 96 0 2526 35 0 3 chr12 49608080 49608369 -94178086 - AluY SINE Alu -11 300 13 229 350 10 21 chr12 49608506 49608603 -94177852 - MIR SINE MIR -75 133 38 1967 114 4 0 chr12 49608995 49609257 -94177198 + AluSq SINE Alu 1 263 -50 247 125 0 0 chr12 49609332 49609372 -94177083 + L1 LINE L1 3896 3935 -2211 262 77 0 0 chr12 49609398 49609437 -94177018 - L1MA4A LINE L1 -31 6272 6234 735 192 0 8 chr12 49609455 49609585 -94176870 + FRAM SINE Alu 34 162 -14 1628 176 24 30 chr12 49609585 49609880 -94176575 + AluJo SINE Alu 1 293 -19 2242 114 3 3 chr12 49610009 49610316 -94176139 + AluSx SINE Alu 3 309 -3 1568 162 4 0 chr12 49610339 49610592 -94175863 + AluSq SINE Alu 1 254 -59 941 96 0 0 chr12 49610692 49610817 -94175638 - AluSq SINE Alu -58 255 131 297 256 47 35 chr12 49610817 49610903 -94175552 + MIR SINE MIR 106 192 -70 346 323 46 0 chr12 49611933 49612063 -94174392 + L2 LINE L2 3137 3272 0 709 287 77 5 chr12 49612274 49612483 -94173972 + MIR SINE MIR 23 246 -16 345 349 48 7 chr12 49612999 49613195 -94173260 + MIR3 SINE MIR 13 221 -41 1964 168 24 24 chr12 49613786 49614166 -94172289 + MLT1B LTR MaLR 11 390 0 1378 134 25 25 chr12 49614380 49614604 -94171851 - THE1B LTR MaLR -2 362 139 4479 49 17 57 chr12 49614604 49615694 -94170761 - MER11A LTR ERVK 0 1266 1 836 129 114 0 chr12 49615694 49615825 -94170630 - THE1B LTR MaLR -218 146 1 3205 84 0 2 chr12 49615825 49616239 -94170216 - THE1B-int LTR MaLR 0 1580 1168 4482 143 2 23 chr12 49616245 49616816 -94169639 - L1PB1 LINE L1 -130 6021 5440 2305 92 0 3 chr12 49616816 49617110 -94169345 - AluY SINE Alu -18 293 1 4482 143 2 23 chr12 49617110 49617883 -94168572 - L1PB1 LINE L1 -711 5440 4381 5339 109 1 0 chr12 49617883 49618608 -94167847 - THE1B-int LTR MaLR -719 861 136 2153 111 60 28 chr12 49618644 49618997 -94167458 - THE1B LTR MaLR 0 364 1 1580 174 111 3 chr12 49619160 49619511 -94166944 + L1MA5 LINE L1 5908 6296 -4 351 253 111 16 chr12 49619816 49619987 -94166468 - MIR3 SINE MIR -32 176 14 2359 67 20 0 chr12 49620253 49620551 -94165904 - AluY SINE Alu -6 305 2 22 0 0 0 chr12 49620690 49620712 -94165743 + AT_rich Low_complexity Low_complexity 1 22 0 381 260 58 45 chr12 49624295 49624449 -94162006 - L2 LINE L2 0 3313 3158 1183 258 104 38 chr12 49625091 49625829 -94160626 - L2 LINE L2 0 3313 2440 230 240 0 0 chr12 49625900 49625950 -94160505 + CT-rich Low_complexity Low_complexity 3 52 0 480 158 17 8 chr12 49626035 49626155 -94160300 + CT-rich Low_complexity Low_complexity 2 122 0 642 330 33 31 chr12 49626157 49626606 -94159849 + L1MC/D LINE L1 5313 5762 -2046 215 260 0 0 chr12 49627019 49627069 -94159386 + L2 LINE L2 2198 2247 -1067 770 259 30 55 chr12 49627069 49627305 -94159150 - L2 LINE L2 -871 2443 2214 809 156 170 0 chr12 49627983 49628195 -94158260 + MER5C DNA MER1_type 73 320 -4 278 86 14 129 chr12 49628331 49628401 -94158054 + MLT1A1 LTR MaLR 1 62 -303 1412 189 52 11 chr12 49628464 49628750 -94157705 + MLT1A1 LTR MaLR 68 365 0 42666 34 21 1 chr12 49630287 49636310 -94150145 - L1PA2 LINE L1 -3 6152 8 302 192 68 55 chr12 49636416 49636489 -94149966 + MARNA DNA Mariner 132 205 -381 434 298 53 18 chr12 49636498 49636723 -94149732 - L2 LINE L2 0 3313 3081 699 288 98 14 chr12 49636797 49637092 -94149363 + MARNA DNA Mariner 219 538 -48 384 255 28 0 chr12 49637340 49637446 -94149009 + MIR SINE MIR 63 171 -91 21 0 0 0 chr12 49637848 49637869 -94148586 + AT_rich Low_complexity Low_complexity 1 21 0 668 191 0 38 chr12 49637929 49638060 -94148395 + FLAM_A SINE Alu 1 126 -7 330 293 85 0 chr12 49640426 49640532 -94145923 + MIR SINE MIR 127 241 -21 180 256 44 33 chr12 49640793 49640883 -94145572 - L2 LINE L2 -104 3209 3119 2134 286 100 28 chr12 49640900 49641544 -94144911 - L2 LINE L2 -826 2488 1892 189 0 0 0 chr12 49641544 49641565 -94144890 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2223 93 4 0 chr12 49641565 49641845 -94144610 - AluSp SINE Alu -32 281 1 2134 286 100 28 chr12 49641845 49642258 -94144197 - L2 LINE L2 -1421 1893 1354 536 95 51 0 chr12 49642530 49642667 -94143788 + (TA)n Simple_repeat Simple_repeat 1 144 0 2112 111 7 26 chr12 49642667 49642973 -94143482 - AluSx SINE Alu -12 300 1 21 57 0 0 chr12 49643296 49643331 -94143124 + AT_rich Low_complexity Low_complexity 1 35 0 28 71 0 0 chr12 49643527 49643583 -94142872 + AT_rich Low_complexity Low_complexity 1 56 0 7326 36 1 1 chr12 49644324 49645833 -94140622 + L1PA5 LINE L1 4612 6120 -34 1797 166 3 3 chr12 49646610 49646912 -94139543 + AluJo SINE Alu 1 302 -10 236 210 16 0 chr12 49647180 49647242 -94139213 - L1MCa LINE L1 -4358 2068 2006 227 304 47 0 chr12 49647266 49647437 -94139018 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 226 322 23 0 chr12 49647474 49647561 -94138894 + L1MC4 LINE L1 6615 6703 -1339 * 318 256 0 0 chr12 49647531 49647621 -94138834 + L1MC4 LINE L1 6614 6703 -1339 2177 61 0 0 chr12 49647637 49647899 -94138556 - AluY SINE Alu -6 305 44 742 191 0 0 chr12 49647983 49648109 -94138346 + FLAM_A SINE Alu 1 126 -7 205 182 15 30 chr12 49648273 49648339 -94138116 + CT-rich Low_complexity Low_complexity 3 67 0 2262 101 0 3 chr12 49649550 49649847 -94136608 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr12 49650159 49650182 -94136273 + AT_rich Low_complexity Low_complexity 1 23 0 305 235 88 28 chr12 49651371 49651510 -94134945 + MIR SINE MIR 25 175 -66 268 221 124 0 chr12 49652260 49652373 -94134082 - L1ME LINE L1 -239 5882 5756 636 212 14 94 chr12 49652642 49652854 -94133601 - MLT1D LTR MaLR -310 195 1 21 0 0 0 chr12 49653027 49653048 -94133407 + AT_rich Low_complexity Low_complexity 1 21 0 2257 103 3 0 chr12 49653360 49653660 -94132795 + AluSc SINE Alu 1 301 -8 22 88 0 0 chr12 49654255 49654312 -94132143 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr12 49654378 49654404 -94132051 + AT_rich Low_complexity Low_complexity 1 26 0 2071 131 0 0 chr12 49654665 49654977 -94131478 + AluSx SINE Alu 1 312 0 306 278 10 21 chr12 49656231 49656328 -94130127 + MIR SINE MIR 164 259 -3 185 208 151 19 chr12 49657385 49657438 -94129017 - MER5B DNA MER1_type -115 63 4 357 301 29 29 chr12 49660831 49660967 -94125488 + L2 LINE L2 3120 3255 -58 252 86 0 0 chr12 49662310 49662345 -94124110 + (TG)n Simple_repeat Simple_repeat 2 36 0 246 257 14 0 chr12 49662507 49662577 -94123878 - MER94 DNA DNA -36 98 28 2247 260 96 31 chr12 49664361 49665898 -94120557 + L1MEc LINE L1 36 3307 -2908 1023 254 122 18 chr12 49665907 49666346 -94120109 + MLT1D LTR MaLR 1 467 0 695 243 82 22 chr12 49666356 49666623 -94119832 + L1MEc LINE L1 3326 3608 -2607 566 260 94 10 chr12 49666620 49666812 -94119643 + L1ME1 LINE L1 5952 6159 -7 * 407 276 33 53 chr12 49667498 49667650 -94118805 - MIR SINE MIR -78 184 36 205 329 0 38 chr12 49669299 49669378 -94117077 + L2 LINE L2 3193 3268 -4 21 36 0 0 chr12 49670138 49670166 -94116289 + AT_rich Low_complexity Low_complexity 1 28 0 1309 108 37 23 chr12 49670166 49670380 -94116075 - L1PA10 LINE L1 -4 6164 5948 300 269 90 8 chr12 49670599 49670733 -94115722 - L1 LINE L1 -1829 4317 4173 274 268 0 0 chr12 49670739 49670795 -94115660 - AluJ/monomer SINE Alu -12 290 235 22 35 0 0 chr12 49671050 49671079 -94115376 + AT_rich Low_complexity Low_complexity 1 29 0 1700 162 23 13 chr12 49671964 49672266 -94114189 + AluJb SINE Alu 1 305 -7 21 57 0 0 chr12 49673202 49673237 -94113218 + AT_rich Low_complexity Low_complexity 1 35 0 2653 164 15 8 chr12 49673550 49673572 -94112883 - L1MB4 LINE L1 0 6180 6160 264 59 0 0 chr12 49673572 49673606 -94112849 + (TG)n Simple_repeat Simple_repeat 1 34 0 204 40 0 0 chr12 49673609 49673634 -94112821 + (TA)n Simple_repeat Simple_repeat 1 25 0 2653 164 15 8 chr12 49673634 49674130 -94112325 - L1MB4 LINE L1 -21 6159 5654 309 223 134 76 chr12 49674589 49674746 -94111709 - MLT1K LTR MaLR -12 576 411 294 287 24 85 chr12 49674848 49675012 -94111443 - MLT1K LTR MaLR -343 245 92 449 369 65 0 chr12 49676490 49676704 -94109751 - MIR SINE MIR -30 232 5 204 125 0 0 chr12 49677090 49677122 -94109333 + (CATA)n Simple_repeat Simple_repeat 2 33 0 940 163 224 37 chr12 49678068 49678314 -94108141 + AluJo SINE Alu 1 292 -10 192 77 0 0 chr12 49678339 49678365 -94108090 + (TG)n Simple_repeat Simple_repeat 2 27 0 543 95 107 0 chr12 49678430 49678514 -94107941 - AluSc SINE Alu -15 294 202 334 82 20 20 chr12 49678514 49678563 -94107892 - AluJb SINE Alu -131 171 123 181 219 0 0 chr12 49679225 49679257 -94107198 + L2 LINE L2 3226 3257 -15 1255 244 159 0 chr12 49679460 49679895 -94106560 - MLT2B1 LTR ERVL 0 520 17 397 298 157 54 chr12 49679917 49680286 -94106169 + L2 LINE L2 2862 3268 -4 391 254 7 56 chr12 49681222 49681364 -94105091 - MARNA DNA Mariner -182 404 270 347 324 100 28 chr12 49682347 49682632 -94103823 - L1M4 LINE L1 -993 5153 4841 640 62 0 0 chr12 49682632 49682712 -94103743 + MADE1 DNA Mariner 1 80 0 347 324 100 28 chr12 49682712 49682747 -94103708 - L1M4 LINE L1 -1305 4841 4810 525 229 84 12 chr12 49682834 49683000 -94103455 - L1MEc LINE L1 -6179 217 40 568 307 112 45 chr12 49683002 49683563 -94102892 - L1MDa LINE L1 -3056 3484 2886 310 293 130 55 chr12 49683639 49683943 -94102512 - L1MDa LINE L1 -3904 2636 2446 182 36 0 36 chr12 49684978 49685006 -94101449 + (TTA)n Simple_repeat Simple_repeat 3 29 0 232 264 23 23 chr12 49687834 49687921 -94098534 + CT-rich Low_complexity Low_complexity 2 88 0 1825 193 112 30 chr12 49691966 49692396 -94094059 + MER68 LTR ERV1 1 465 -97 258 146 0 0 chr12 49692400 49692441 -94094014 + MER77 LTR ERV1 565 605 0 318 216 198 18 chr12 49692624 49692735 -94093720 - MLT1K LTR MaLR -19 569 439 21 0 0 0 chr12 49693676 49693697 -94092758 + AT_rich Low_complexity Low_complexity 1 21 0 13768 29 2 1 chr12 49694102 49696516 -94089939 - L1PA3 LINE L1 -3 6152 3736 8253 35 1 0 chr12 49696516 49697533 -94088922 + L1PA3 LINE L1 2693 3713 -2433 316 292 142 9 chr12 49698197 49698430 -94088025 + L1ME LINE L1 5560 5823 -298 259 176 59 44 chr12 49698440 49698508 -94087947 - MIR SINE MIR 0 262 194 677 223 6 40 chr12 49698761 49698936 -94087519 - MER3 DNA MER1_type -87 122 1 303 333 0 0 chr12 49699843 49699933 -94086522 - L1MC4 LINE L1 -1339 6703 6614 446 172 21 0 chr12 49699933 49700026 -94086429 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 2467 82 0 0 chr12 49700197 49700502 -94085953 + AluY SINE Alu 1 305 -6 8372 204 53 63 chr12 49701070 49706438 -94080017 + L1PB1 LINE L1 306 5860 -1002 5746 100 9 41 chr12 49706441 49707012 -94079443 + L1PB1 LINE L1 5922 6452 -415 216 0 0 0 chr12 49707012 49707036 -94079419 + (TA)n Simple_repeat Simple_repeat 2 25 0 5746 100 9 41 chr12 49707036 49707432 -94079023 + L1PB1 LINE L1 6452 6859 -8 32 26 0 0 chr12 49707436 49707475 -94078980 + AT_rich Low_complexity Low_complexity 1 39 0 233 338 132 29 chr12 49708119 49708255 -94078200 + MIR3 SINE MIR 7 156 -52 186 348 0 0 chr12 49708431 49708477 -94077978 - L2 LINE L2 -16 3297 3252 712 304 112 10 chr12 49708879 49709182 -94077273 - LTR16C LTR ERVL 0 491 158 268 307 71 31 chr12 49709808 49709935 -94076520 + MIR SINE MIR 23 154 -108 383 292 64 43 chr12 49711169 49711402 -94075053 + L2 LINE L2 2173 2410 -904 846 153 15 0 chr12 49712912 49713049 -94073406 - BC200 scRNA scRNA -61 139 1 249 349 37 9 chr12 49714192 49714301 -94072154 + MIR SINE MIR 32 143 -119 345 267 27 67 chr12 49714321 49714471 -94071984 + L2 LINE L2 2381 2524 -790 226 227 45 45 chr12 49714488 49714554 -94071901 + MER119 DNA MER1_type 28 93 -490 525 170 28 19 chr12 49714589 49714695 -94071760 + MER119 DNA MER1_type 477 583 0 596 344 120 20 chr12 49714724 49714929 -94071526 + L2 LINE L2 2552 2735 -578 1856 118 4 11 chr12 49714929 49715192 -94071263 - AluSx SINE Alu -31 281 21 596 344 120 20 chr12 49715192 49715673 -94070782 + L2 LINE L2 2735 3307 -6 28 79 0 0 chr12 49716237 49716300 -94070155 + AT_rich Low_complexity Low_complexity 1 63 0 886 249 101 42 chr12 49717431 49717836 -94068619 - HAL1 LINE L1 0 2507 2079 2389 96 0 0 chr12 49717996 49718308 -94068147 - AluSx SINE Alu 0 312 1 320 276 125 73 chr12 49718322 49718589 -94067866 - HAL1 LINE L1 -476 2031 1735 2268 98 0 0 chr12 49718589 49718886 -94067569 - AluSg SINE Alu -13 297 1 320 276 125 73 chr12 49718886 49719017 -94067438 - HAL1 LINE L1 -772 1735 1612 479 285 164 29 chr12 49719081 49719526 -94066929 - HAL1 LINE L1 -1991 516 12 344 212 24 12 chr12 49920708 49920793 -93865662 - LTR33 LTR ERVL -427 94 9 21 0 0 0 chr12 49920929 49920950 -93865505 + AT_rich Low_complexity Low_complexity 1 21 0 1822 78 0 0 chr12 49921002 49921221 -93865234 - AluSg SINE Alu -11 298 80 * 2560 65 0 7 chr12 49921220 49921526 -93864929 - AluY SINE Alu -7 304 1 622 135 0 0 chr12 49921529 49921618 -93864837 - AluSg SINE Alu -220 90 2 31 0 0 0 chr12 49921751 49921782 -93864673 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 49921808 49921836 -93864619 + AT_rich Low_complexity Low_complexity 1 28 0 2030 150 0 0 chr12 49921879 49922173 -93864282 - AluSx SINE Alu -13 299 6 1959 169 0 0 chr12 49922177 49922473 -93863982 - AluSx SINE Alu -16 296 1 2467 59 3 16 chr12 49922544 49922851 -93863604 - AluY SINE Alu -8 303 1 2072 115 0 71 chr12 49922858 49923038 -93863417 - AluSg SINE Alu -10 300 109 372 119 0 0 chr12 49923038 49923097 -93863358 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 2249 84 0 27 chr12 49923098 49923395 -93863060 - AluSp SINE Alu -24 289 1 2072 115 0 71 chr12 49923395 49923535 -93862920 - AluSg SINE Alu -200 110 1 2083 137 3 16 chr12 49923539 49923845 -93862610 - AluSx SINE Alu -10 302 1 270 0 0 0 chr12 49923867 49923897 -93862558 + (CA)n Simple_repeat Simple_repeat 2 31 0 1702 188 17 0 chr12 49923957 49924250 -93862205 - AluJb SINE Alu -14 298 1 2257 115 6 6 chr12 49924649 49924961 -93861494 + AluSx SINE Alu 1 312 0 221 294 109 42 chr12 49924973 49925092 -93861363 + MIR SINE MIR 21 147 -115 194 214 94 77 chr12 49925167 49925284 -93861171 + L2 LINE L2 3091 3209 -104 381 207 17 126 chr12 49925473 49925647 -93860808 + MLT1L LTR MaLR 210 364 -251 32 43 0 0 chr12 49925760 49925806 -93860649 + AT_rich Low_complexity Low_complexity 1 46 0 332 173 13 40 chr12 49925855 49925930 -93860525 + L2 LINE L2 3240 3312 -1 2214 126 0 0 chr12 49926027 49926321 -93860134 - AluSx SINE Alu -17 295 2 394 321 93 29 chr12 49926322 49926602 -93859853 - L2 LINE L2 -861 2453 2156 2338 113 0 0 chr12 49926608 49926918 -93859537 - AluSg SINE Alu 0 310 1 1320 167 30 37 chr12 49927150 49927235 -93859220 + Tigger1 DNA MER2_type 109 193 -2225 2214 112 20 0 chr12 49927235 49927531 -93858924 + AluSx SINE Alu 1 302 -10 1320 167 30 37 chr12 49927531 49927900 -93858555 + Tigger1 DNA MER2_type 193 654 -1764 2119 143 7 0 chr12 49927901 49928209 -93858246 + AluSx SINE Alu 3 312 0 371 276 175 96 chr12 49928314 49928480 -93857975 + L3 LINE CR1 923 1074 -503 1803 179 6 26 chr12 49928480 49928793 -93857662 - AluJb SINE Alu -5 307 1 371 276 175 96 chr12 49928793 49928992 -93857463 + L3 LINE CR1 1074 1317 -260 1970 140 65 16 chr12 49929080 49929401 -93857054 - MER1B DNA MER1_type 0 337 1 1005 236 23 43 chr12 49929426 49929727 -93856728 - LTR5 LTR ERVK 0 969 675 2528 66 0 0 chr12 49929893 49930195 -93856260 + AluY SINE Alu 10 311 0 1523 187 32 32 chr12 49930206 49930281 -93856174 + AluJo SINE Alu 1 75 -237 3765 74 32 8 chr12 49930281 49930780 -93855675 - MER9 LTR ERVK 0 511 1 1756 85 34 4 chr12 49930780 49931015 -93855440 + AluSq SINE Alu 70 311 -2 1523 187 32 32 chr12 49931015 49931248 -93855207 + AluJo SINE Alu 73 310 -2 1683 180 39 3 chr12 49931404 49931738 -93854717 - Tigger1 DNA MER2_type -1115 1303 958 1659 219 3 0 chr12 49931742 49932048 -93854407 - AluJo SINE Alu -5 307 1 1193 209 13 51 chr12 49932051 49932367 -93854088 - L1M4 LINE L1 -2299 3847 3544 1194 143 0 0 chr12 49932367 49932535 -93853920 + AluSg/x SINE Alu 129 296 -14 303 163 31 41 chr12 49932535 49932633 -93853822 - L1M4 LINE L1 -2588 3558 3462 255 61 0 0 chr12 49932793 49932826 -93853629 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1189 140 0 17 chr12 49932848 49933027 -93853428 - AluSg SINE Alu -134 176 1 2132 100 4 0 chr12 49933077 49933347 -93853108 - AluSq SINE Alu -27 286 16 21 0 0 0 chr12 49934752 49934773 -93851682 + AT_rich Low_complexity Low_complexity 1 21 0 1373 106 0 0 chr12 49935048 49935228 -93851227 - AluY SINE Alu -131 180 1 560 244 77 0 chr12 49935235 49935403 -93851052 - L1M4 LINE L1 -2666 3480 3300 2099 137 3 3 chr12 49935404 49935710 -93850745 - AluSx SINE Alu -6 306 1 857 207 23 11 chr12 49935711 49935885 -93850570 - FAM SINE Alu 0 49 1 21 57 0 0 chr12 49935903 49935938 -93850517 + AT_rich Low_complexity Low_complexity 1 35 0 514 221 108 97 chr12 49936347 49936419 -93850036 - MIR SINE MIR 0 262 192 2464 99 0 3 chr12 49936419 49936733 -93849722 - AluSq SINE Alu 0 313 1 514 221 108 97 chr12 49936733 49936855 -93849600 - MIR SINE MIR -70 192 66 2266 102 3 0 chr12 49936895 49937188 -93849267 + AluSx SINE Alu 18 311 -1 1245 170 0 37 chr12 49937189 49937432 -93849023 + AluJo SINE Alu 86 312 0 1799 162 27 69 chr12 49937721 49938128 -93848327 + MLT1B LTR MaLR 1 390 0 2459 106 0 0 chr12 49938224 49938536 -93847919 - AluSq SINE Alu -1 312 1 24 0 0 0 chr12 49938573 49938597 -93847858 + AT_rich Low_complexity Low_complexity 1 24 0 1928 126 0 58 chr12 49938597 49938785 -93847670 - AluSx SINE Alu -21 291 126 2217 80 20 7 chr12 49938785 49939087 -93847368 - AluY SINE Alu -5 306 1 1928 126 0 58 chr12 49939087 49939207 -93847248 - AluSx SINE Alu -186 126 1 231 88 0 0 chr12 49939210 49939244 -93847211 + (A)n Simple_repeat Simple_repeat 1 34 0 590 172 0 11 chr12 49939244 49939363 -93847092 - AluJ SINE Alu 0 309 192 922 154 0 7 chr12 49939363 49939506 -93846949 - AluJ SINE Alu -170 142 1 1981 164 0 3 chr12 49939507 49939800 -93846655 - AluJb SINE Alu -20 292 1 207 69 0 0 chr12 49939806 49939835 -93846620 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2107 112 0 7 chr12 49940030 49940324 -93846131 - AluSc SINE Alu -17 292 1 2600 44 7 0 chr12 49940592 49940890 -93845565 - AluY SINE Alu -11 300 1 2162 128 0 10 chr12 49941028 49941340 -93845115 - AluSx SINE Alu -3 309 1 2568 45 0 0 chr12 49941351 49941643 -93844812 - AluY SINE Alu -19 292 1 2370 94 3 3 chr12 49942415 49942723 -93843732 + AluSq SINE Alu 1 308 -5 2332 114 0 0 chr12 49942733 49943039 -93843416 + AluSq SINE Alu 1 306 -7 1330 176 46 42 chr12 49943131 49943392 -93843063 + AluJb SINE Alu 40 301 -11 1928 168 0 13 chr12 49943394 49943704 -93842751 + AluSx SINE Alu 1 306 -6 841 208 9 56 chr12 49943943 49944159 -93842296 + MER58A DNA MER1_type 4 209 -15 417 36 0 18 chr12 49945333 49945389 -93841066 + AluY SINE Alu 245 299 -12 1622 175 9 52 chr12 49945456 49945782 -93840673 + AluJb SINE Alu 1 312 0 2004 151 7 0 chr12 49945957 49946256 -93840199 + AluSx SINE Alu 12 312 0 200 281 67 74 chr12 49946361 49946496 -93839959 + L3 LINE CR1 923 1056 -521 872 283 8 158 chr12 49946527 49946895 -93839560 - AluYb8 SINE Alu -5 313 1 1399 70 0 6 chr12 49947057 49947229 -93839226 + AluSg/x SINE Alu 131 301 -9 228 246 31 0 chr12 49947870 49947935 -93838520 + C-rich Low_complexity Low_complexity 1 67 0 206 322 0 0 chr12 49948821 49948880 -93837575 + G-rich Low_complexity Low_complexity 3 61 0 359 353 58 17 chr12 49950300 49950541 -93835914 + L3b LINE CR1 1209 1459 -124 1430 169 35 16 chr12 49950549 49950803 -93835652 - AluJo SINE Alu -50 262 4 430 311 30 52 chr12 49950841 49951108 -93835347 + MIR SINE MIR 2 262 0 276 283 54 33 chr12 49952424 49952516 -93833939 - L2 LINE L2 -34 3238 3145 207 0 0 0 chr12 49953623 49953646 -93832809 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2293 92 3 0 chr12 49953653 49953946 -93832509 - AluSp SINE Alu -19 294 1 215 31 31 0 chr12 49953946 49953978 -93832477 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1830 146 7 14 chr12 49953978 49954265 -93832190 - AluSq SINE Alu -28 285 1 2204 129 3 0 chr12 49954613 49955008 -93831447 - AluSx SINE Alu 0 396 1 1960 149 0 13 chr12 49955263 49955564 -93830891 - AluJb SINE Alu -15 297 1 832 203 0 0 chr12 49955588 49955721 -93830734 - FLAM_C SINE Alu 0 133 1 806 183 49 12 chr12 49955726 49955890 -93830565 - FRAM SINE Alu -7 169 1 580 162 50 0 chr12 49957033 49957132 -93829323 + U13 snRNA snRNA 1 104 0 1658 158 25 65 chr12 49957188 49957325 -93829130 + AluJb SINE Alu 1 142 -170 2314 107 7 0 chr12 49957325 49957623 -93828832 + AluSq SINE Alu 1 300 -13 1658 158 25 65 chr12 49957623 49957771 -93828684 + AluJb SINE Alu 142 274 -38 1201 204 9 35 chr12 49957771 49958090 -93828365 - AluY SINE Alu 0 311 1 1658 158 25 65 chr12 49958090 49958125 -93828330 + AluJb SINE Alu 274 309 -3 1065 156 6 0 chr12 49958180 49958340 -93828115 + FAM SINE Alu 6 166 -19 633 367 43 101 chr12 49958349 49958627 -93827828 + AluSc SINE Alu 12 273 -36 1992 132 3 7 chr12 49958671 49958974 -93827481 + AluY SINE Alu 7 308 -3 537 319 155 15 chr12 49958979 49959315 -93827140 + L2 LINE L2 2364 2746 -568 2242 129 0 0 chr12 49959357 49959660 -93826795 - AluSg SINE Alu -7 303 1 1093 175 99 56 chr12 49959669 49959921 -93826534 + AluJo SINE Alu 35 297 -15 1777 168 13 7 chr12 49959963 49960266 -93826189 - AluJb SINE Alu -7 305 1 262 319 116 78 chr12 49960268 49960584 -93825871 + L2 LINE L2 2924 3255 -17 2260 102 7 0 chr12 49960584 49960879 -93825576 + AluY SINE Alu 1 297 -14 262 319 116 78 chr12 49960879 49960897 -93825558 + L2 LINE L2 3255 3271 -1 2024 138 17 3 chr12 49962082 49962380 -93824075 + AluSx SINE Alu 1 302 -10 2176 106 7 10 chr12 49962454 49962611 -93823844 - AluSx SINE Alu -20 292 135 1891 101 69 11 chr12 49962611 49962887 -93823568 - AluY SINE Alu -19 292 1 2176 106 7 10 chr12 49962887 49963022 -93823433 - AluSx SINE Alu -177 135 1 2076 129 34 3 chr12 49963022 49963316 -93823139 - AluSx SINE Alu -9 303 1 205 357 58 23 chr12 49963562 49963733 -93822722 - L2 LINE L2 -10 3303 3127 2306 104 0 0 chr12 49965061 49965359 -93821096 - AluSx SINE Alu -14 298 1 219 231 0 0 chr12 49965359 49965398 -93821057 - L2 LINE L2 -10 3303 3265 1085 254 113 31 chr12 49965467 49965802 -93820653 - L2 LINE L2 -33 3280 2974 890 163 0 15 chr12 49965802 49965937 -93820518 + FLAM_C SINE Alu 1 133 0 1085 254 113 31 chr12 49965937 49966241 -93820214 - L2 LINE L2 -339 2974 2601 615 178 70 23 chr12 49966675 49966804 -93819651 - MIR3 SINE MIR -14 194 60 294 115 0 0 chr12 49971125 49971177 -93815278 + (TG)n Simple_repeat Simple_repeat 1 52 0 2173 95 9 22 chr12 49973136 49973453 -93813002 - AluSp SINE Alu 0 313 1 963 138 25 12 chr12 49974309 49974469 -93811986 - AluSg/x SINE Alu -17 293 132 1632 91 14 0 chr12 49974469 49974688 -93811767 - AluSg/x SINE Alu -13 299 78 708 177 34 37 chr12 49974688 49974877 -93811578 - MIR SINE MIR -47 215 18 206 312 0 13 chr12 49977494 49977571 -93808884 + CT-rich Low_complexity Low_complexity 6 81 0 1812 151 0 35 chr12 49981282 49981599 -93804856 + AluJb SINE Alu 1 306 -6 190 372 88 15 chr12 49982312 49982449 -93804006 - L2 LINE L2 -908 2406 2260 1622 166 28 3 chr12 49982555 49982845 -93803610 + AluJo SINE Alu 1 297 -15 2078 97 7 17 chr12 49982918 49983217 -93803238 + AluSg SINE Alu 1 296 -14 1640 158 39 11 chr12 49984946 49985225 -93801230 + AluJo SINE Alu 2 288 -24 27 49 0 0 chr12 49987074 49987115 -93799340 + AT_rich Low_complexity Low_complexity 1 41 0 2094 118 3 13 chr12 49988154 49988181 -93798274 - AluSx SINE Alu -1 311 285 423 0 0 0 chr12 49988181 49988228 -93798227 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2094 118 3 13 chr12 49988228 49988514 -93797941 - AluSx SINE Alu -27 285 1 347 213 55 144 chr12 49990571 49990773 -93795682 + MIR3 SINE MIR 9 192 -16 921 106 15 0 chr12 49990787 49990919 -93795536 + AluJo SINE Alu 1 134 -178 21 0 0 0 chr12 49991938 49991959 -93794496 + GC_rich Low_complexity Low_complexity 1 21 0 208 256 0 0 chr12 49993127 49993170 -93793285 + L2 LINE L2 3018 3060 -212 1365 188 24 24 chr12 49993433 49993725 -93792730 + AluJo SINE Alu 1 292 -20 1781 192 0 0 chr12 49993726 49994038 -93792417 + AluSx SINE Alu 1 312 0 523 250 65 0 chr12 49994045 49994169 -93792286 - MER91B DNA MER1_type -40 150 19 486 272 30 0 chr12 49995945 49996084 -93790371 + MIR SINE MIR 1 145 -63 1669 180 6 6 chr12 49996317 49996628 -93789827 - AluJo SINE Alu -1 311 1 1662 139 15 68 chr12 49996637 49996961 -93789494 - AluJb SINE Alu -5 307 1 227 318 0 0 chr12 49997053 49997119 -93789336 + MLT1L LTR MaLR 195 260 -355 555 287 44 27 chr12 49997190 49997507 -93788948 - LTR33 LTR ERVL -37 484 106 184 177 32 113 chr12 49997582 49997644 -93788811 + L2 LINE L2 3225 3281 -32 234 0 0 0 chr12 49997651 49997677 -93788778 + (TA)n Simple_repeat Simple_repeat 2 27 0 2133 95 0 24 chr12 49997677 49997972 -93788483 - AluSx SINE Alu -24 288 1 218 186 151 70 chr12 49997972 49998058 -93788397 + MIR SINE MIR 167 259 -3 569 254 163 41 chr12 49998058 49998396 -93788059 + L2 LINE L2 2469 2847 -467 943 128 0 0 chr12 49998573 49998714 -93787741 + AluJo SINE Alu 1 141 -171 22 35 0 0 chr12 49998731 49998760 -93787695 + AT_rich Low_complexity Low_complexity 1 29 0 2411 58 0 0 chr12 49998790 49999099 -93787356 + AluY SINE Alu 1 309 -2 367 263 140 22 chr12 49999116 49999295 -93787160 + L2 LINE L2 3114 3313 0 1728 148 7 13 chr12 50001071 50001381 -93785074 + AluSx SINE Alu 1 308 -4 2278 105 0 3 chr12 50001381 50001694 -93784761 + AluSq SINE Alu 1 313 0 1387 199 23 3 chr12 50001703 50002005 -93784450 + L1MA4 LINE L1 5991 6298 -2 2028 121 7 7 chr12 50002013 50002311 -93784144 - AluSx SINE Alu -10 302 5 1383 146 15 137 chr12 50002369 50002712 -93783743 + AluJo SINE Alu 2 302 0 238 278 232 0 chr12 50003620 50003738 -93782717 + MIR SINE MIR 26 122 -86 2218 110 0 0 chr12 50003859 50004168 -93782287 - AluY SINE Alu -2 309 1 808 133 39 0 chr12 50004169 50004297 -93782158 - AluSq/x SINE Alu -178 134 2 1725 128 62 10 chr12 50005137 50005426 -93781029 - AluSq SINE Alu -9 304 1 620 249 79 0 chr12 50006702 50006879 -93779576 + MIR SINE MIR 64 254 -8 2315 86 13 0 chr12 50006885 50007189 -93779266 + AluSq SINE Alu 1 308 -5 674 210 127 22 chr12 50007473 50007654 -93778801 - MER3 DNA MER1_type 0 209 10 2130 95 0 3 chr12 50007654 50007949 -93778506 + AluSg SINE Alu 1 294 -16 260 294 100 12 chr12 50008080 50008240 -93778215 + MIR SINE MIR 47 220 -42 39 60 0 0 chr12 50009628 50009695 -93776760 + GC_rich Low_complexity Low_complexity 1 67 0 29 47 0 0 chr12 50009818 50009861 -93776594 + GC_rich Low_complexity Low_complexity 1 43 0 431 265 15 61 chr12 50015936 50016068 -93770387 + L2 LINE L2 3136 3261 -11 280 348 103 13 chr12 50020233 50020388 -93766067 - MIR3 SINE MIR -38 170 2 309 345 86 0 chr12 50021295 50021411 -93765044 - L2 LINE L2 -1 3312 3187 2193 101 3 22 chr12 50022092 50022410 -93764045 + AluSx SINE Alu 1 312 0 2067 124 0 16 chr12 50022661 50022968 -93763487 + AluSq SINE Alu 1 302 -11 745 222 9 86 chr12 50023894 50024115 -93762340 - MIR3 SINE MIR 0 208 5 2342 73 3 3 chr12 50024146 50024449 -93762006 - AluY SINE Alu -8 303 1 182 188 0 21 chr12 50030887 50030935 -93755520 + (CAG)n Simple_repeat Simple_repeat 1 47 0 240 35 0 0 chr12 50032276 50032305 -93754150 + (CAG)n Simple_repeat Simple_repeat 1 29 0 217 207 0 35 chr12 50032861 50032919 -93753536 + L2 LINE L2 3217 3272 0 2162 109 0 34 chr12 50033013 50033334 -93753121 + AluSq SINE Alu 1 310 -3 1182 127 0 0 chr12 50033334 50033499 -93752956 + AluSg/x SINE Alu 132 296 -14 617 276 55 0 chr12 50033668 50033867 -93752588 - MIR SINE MIR 0 262 53 2308 109 0 0 chr12 50033954 50034266 -93752189 + AluSq SINE Alu 1 312 -1 211 280 11 65 chr12 50034529 50034622 -93751833 - MIR SINE MIR -57 205 118 309 109 0 0 chr12 50035901 50035947 -93750508 + (CAG)n Simple_repeat Simple_repeat 2 47 0 303 28 0 0 chr12 50036310 50036346 -93750109 + (CAG)n Simple_repeat Simple_repeat 3 38 0 219 114 0 0 chr12 50036674 50036709 -93749746 + (CAG)n Simple_repeat Simple_repeat 1 35 0 804 172 0 0 chr12 50036809 50037031 -93749424 + (CAG)n Simple_repeat Simple_repeat 1 222 0 183 80 0 0 chr12 50037342 50037367 -93749088 + (CCCCAG)n Simple_repeat Simple_repeat 3 27 0 478 244 20 142 chr12 50039802 50040000 -93746455 + MIR SINE MIR 29 191 -71 879 141 0 30 chr12 50040000 50040135 -93746320 + FLAM_C SINE Alu 3 133 0 478 244 20 142 chr12 50040135 50040190 -93746265 + MIR SINE MIR 191 251 -11 418 353 46 7 chr12 50041064 50041217 -93745238 - L2 LINE L2 0 3272 3114 418 245 46 26 chr12 50041308 50041459 -93744996 + MER103 DNA DNA 3 156 -10 1894 119 7 18 chr12 50042060 50042370 -93744085 + AluSx SINE Alu 1 307 0 462 258 102 49 chr12 50044040 50044182 -93742273 - MIR SINE MIR -14 248 88 2048 150 41 15 chr12 50044182 50044521 -93741934 - MER7A DNA MER2_type 0 346 1 462 258 102 49 chr12 50044521 50044603 -93741852 - MIR SINE MIR -174 88 12 702 215 54 30 chr12 50045666 50045896 -93740559 - MIR SINE MIR 0 262 18 206 312 0 13 chr12 50048513 50048590 -93737865 + CT-rich Low_complexity Low_complexity 6 81 0 1847 151 0 35 chr12 50052302 50052619 -93733836 + AluJb SINE Alu 1 306 -6 196 372 88 15 chr12 50053333 50053470 -93732985 - L2 LINE L2 -908 2406 2260 1658 166 28 3 chr12 50053576 50053866 -93732589 + AluJo SINE Alu 1 297 -15 2088 90 0 40 chr12 50053938 50054239 -93732216 + AluSg SINE Alu 1 289 -21 2117 126 3 0 chr12 50055630 50055932 -93730523 + AluSx SINE Alu 1 303 -9 709 246 20 15 chr12 50056075 50056270 -93730185 + MIR SINE MIR 21 216 -46 1895 143 3 10 chr12 50056270 50056570 -93729885 + AluJb SINE Alu 1 298 -14 2265 121 13 0 chr12 50057140 50057447 -93729008 + AluSq SINE Alu 1 311 -2 2072 136 3 0 chr12 50057657 50057944 -93728511 + AluSx SINE Alu 1 288 -24 2061 118 3 36 chr12 50057952 50058258 -93728197 + AluSq SINE Alu 1 296 -17 805 126 9 0 chr12 50058324 50058435 -93728020 + AluJo SINE Alu 24 135 -177 282 148 19 0 chr12 50058438 50058492 -93727963 + Alu SINE Alu 245 299 -3 5317 211 108 105 chr12 50058637 50058671 -93727784 + HAL1 LINE L1 1 33 -2474 2301 109 3 0 chr12 50058671 50058965 -93727490 + AluSx SINE Alu 1 295 -17 5317 211 108 105 chr12 50058965 50059665 -93726790 + HAL1 LINE L1 33 730 -1777 279 149 0 0 chr12 50059665 50059712 -93726743 + MER101B LTR ERV1 461 507 -63 5317 211 108 105 chr12 50059712 50059901 -93726554 + HAL1 LINE L1 730 917 -1590 2472 96 0 0 chr12 50059901 50060213 -93726242 + AluSq SINE Alu 1 312 -1 5317 211 108 105 chr12 50060213 50060407 -93726048 + HAL1 LINE L1 917 1109 -1398 1852 136 45 14 chr12 50060407 50060693 -93725762 + AluJo SINE Alu 6 300 -12 5317 211 108 105 chr12 50060693 50061655 -93724800 + HAL1 LINE L1 1109 2140 -367 2311 107 3 0 chr12 50061655 50061954 -93724501 + AluSx SINE Alu 1 300 -12 5317 211 108 105 chr12 50061954 50062323 -93724132 + HAL1 LINE L1 2140 2506 -1 446 248 131 7 chr12 50062349 50062502 -93723953 + MIR SINE MIR 18 189 -73 2417 83 3 7 chr12 50062509 50062810 -93723645 - AluSx SINE Alu -12 300 1 2230 88 3 3 chr12 50062816 50063127 -93723328 - AluSp SINE Alu 0 311 1 718 156 8 23 chr12 50063428 50063556 -93722899 - FLAM_A SINE Alu -7 126 1 441 0 0 0 chr12 50064951 50065000 -93721455 + (CA)n Simple_repeat Simple_repeat 2 50 0 315 85 0 0 chr12 50065001 50065048 -93721407 + (TC)n Simple_repeat Simple_repeat 2 48 0 855 130 0 43 chr12 50065330 50065346 -93721109 - FLAM_C SINE Alu -170 132 117 225 0 0 0 chr12 50065346 50065371 -93721084 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 855 130 0 43 chr12 50065371 50065492 -93720963 - FLAM_C SINE Alu -185 117 1 1713 179 3 16 chr12 50065496 50065808 -93720647 - AluJb SINE Alu -4 308 1 2574 74 0 7 chr12 50067772 50068081 -93718374 - AluSg SINE Alu -3 307 1 213 225 0 0 chr12 50071007 50071047 -93715408 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr12 50072509 50072532 -93713923 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 50072722 50072750 -93713705 + GC_rich Low_complexity Low_complexity 1 28 0 499 260 85 34 chr12 50073541 50073718 -93712737 + MIR3 SINE MIR 16 201 -7 1004 164 11 6 chr12 50074473 50074656 -93711799 + MIR SINE MIR 66 249 -13 251 304 0 35 chr12 50074976 50075091 -93711364 + C-rich Low_complexity Low_complexity 2 112 0 1536 138 8 32 chr12 50075413 50075659 -93710796 + AluSx SINE Alu 64 303 -9 185 319 58 0 chr12 50075720 50075789 -93710666 - L2 LINE L2 -13 3259 3187 196 387 29 12 chr12 50075912 50076085 -93710370 - L2 LINE L2 -327 2986 2811 1947 153 27 0 chr12 50076178 50076472 -93709983 + AluSx SINE Alu 1 302 -10 2394 69 28 0 chr12 50076740 50077031 -93709424 + AluY SINE Alu 1 299 -12 2448 74 0 0 chr12 50077038 50077337 -93709118 + AluY SINE Alu 1 299 -12 2473 65 0 3 chr12 50077344 50077638 -93708817 + AluSq SINE Alu 1 293 -20 1769 147 99 17 chr12 50077642 50077995 -93708460 + LTR62 LTR ERVK 197 578 -141 558 167 0 0 chr12 50077995 50078085 -93708370 - MER50 LTR ERV1 0 734 645 1672 159 3 45 chr12 50078339 50078555 -93707900 - AluSg1 SINE Alu -12 297 96 2538 65 3 7 chr12 50078555 50078861 -93707594 - AluY SINE Alu -6 305 1 1672 159 3 45 chr12 50078861 50078953 -93707502 - AluSg1 SINE Alu -213 96 2 31 0 0 0 chr12 50079086 50079117 -93707338 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 50079143 50079171 -93707284 + AT_rich Low_complexity Low_complexity 1 28 0 1800 174 3 0 chr12 50079214 50079507 -93706948 - AluSx SINE Alu -13 299 6 1830 154 27 17 chr12 50079511 50079676 -93706779 - AluJb SINE Alu -16 296 125 2325 89 3 19 chr12 50079676 50079992 -93706463 - AluY SINE Alu 0 311 1 1830 154 27 17 chr12 50079992 50080119 -93706336 - AluJb SINE Alu -187 125 1 2421 94 7 0 chr12 50080150 50080459 -93705996 - AluSq SINE Alu -2 311 1 285 275 140 31 chr12 50080509 50080731 -93705724 + MLT1J LTR MaLR 258 503 -8 991 200 171 76 chr12 50080982 50081446 -93705009 + MLT1H LTR MaLR 1 547 -2 1608 160 38 31 chr12 50081678 50081971 -93704484 + AluJo SINE Alu 1 295 -17 2027 161 3 3 chr12 50081973 50082284 -93704171 + AluJb SINE Alu 1 311 -1 80 21 0 0 chr12 50082348 50082442 -93704013 + AT_rich Low_complexity Low_complexity 1 94 0 2163 122 0 3 chr12 50082521 50082815 -93703640 - AluSg SINE Alu -17 293 1 2475 80 3 0 chr12 50082948 50083247 -93703208 - AluSp SINE Alu -13 300 1 265 316 79 36 chr12 50083334 50083473 -93702982 + MIR3 SINE MIR 19 163 -45 407 217 148 0 chr12 50083604 50083719 -93702736 + MIR SINE MIR 117 248 -14 2107 135 7 3 chr12 50084096 50084393 -93702062 - AluSx SINE Alu -14 298 1 2320 73 0 11 chr12 50084417 50084735 -93701720 - AluY SINE Alu 0 315 1 679 227 73 122 chr12 50084824 50085194 -93701261 + L2 LINE L2 1105 1456 -1858 604 239 113 120 chr12 50085278 50085704 -93700751 - MLT1J LTR MaLR -53 458 36 554 149 0 99 chr12 50085721 50085754 -93700701 - FLAM_A SINE Alu -175 136 101 2417 89 3 0 chr12 50085754 50086057 -93700398 + AluSp SINE Alu 1 304 -9 554 149 0 99 chr12 50086057 50086144 -93700311 - FLAM_A SINE Alu -210 101 28 3477 251 78 59 chr12 50086162 50086854 -93699601 + L2 LINE L2 1369 2046 -1268 1555 184 43 4 chr12 50086854 50087132 -93699323 - AluJo SINE Alu -23 289 1 3477 251 78 59 chr12 50087132 50087242 -93699213 + L2 LINE L2 2046 2152 -1162 2204 108 7 3 chr12 50087242 50087537 -93698918 - AluSg SINE Alu -12 298 3 3477 251 78 59 chr12 50087537 50087871 -93698584 + L2 LINE L2 2152 2478 -836 2116 104 0 24 chr12 50087871 50088187 -93698268 + AluY SINE Alu 1 309 0 3477 251 78 59 chr12 50088187 50088550 -93697905 + L2 LINE L2 2478 2900 -414 533 190 52 0 chr12 50088552 50088668 -93697787 + L1MCa LINE L1 1 122 -6304 287 170 0 0 chr12 50088679 50088726 -93697729 - MER66B LTR ERV1 -141 345 299 2455 53 0 4 chr12 50088781 50089062 -93697393 + AluY SINE Alu 1 280 -31 530 193 17 8 chr12 50089189 50089308 -93697147 + AluSp/q SINE Alu 178 297 -16 917 218 0 5 chr12 50089308 50089496 -93696959 + MER41D LTR ERV1 25 211 -346 562 130 11 0 chr12 50090056 50090148 -93696307 + HY4 scRNA scRNA 1 93 0 915 191 82 10 chr12 50093010 50093204 -93693251 + AluJo SINE Alu 87 294 -18 826 172 195 0 chr12 50095616 50095785 -93690670 + AluJb SINE Alu 66 267 -45 1598 84 20 5 chr12 50096233 50096436 -93690019 + AluSx SINE Alu 1 206 -106 2469 74 0 3 chr12 50096439 50096737 -93689718 + AluY SINE Alu 1 297 -14 859 86 0 0 chr12 50096739 50096844 -93689611 + AluSp/q SINE Alu 192 296 -17 306 197 66 0 chr12 50096921 50096982 -93689473 - MER2 DNA MER2_type -1 344 280 302 168 20 35 chr12 50096991 50097188 -93689267 + AluJo SINE Alu 3 286 -16 1213 180 40 0 chr12 50097199 50097427 -93689028 - MER2 DNA MER2_type -73 272 36 1970 93 0 0 chr12 50097570 50097828 -93688627 - AluSg SINE Alu 0 310 53 407 217 148 0 chr12 50098043 50098158 -93688297 + MIR SINE MIR 117 248 -14 2086 151 0 3 chr12 50098535 50098834 -93687621 - AluJb SINE Alu -14 298 1 255 203 172 0 chr12 50099691 50099755 -93686700 + MIR SINE MIR 73 147 -115 792 272 62 69 chr12 50101057 50101377 -93685078 - MER102b DNA MER1_type -21 320 3 871 248 193 29 chr12 50101852 50102235 -93684220 + LTR33 LTR ERVL 62 507 -14 360 277 84 30 chr12 50104436 50104602 -93681853 - MIR SINE MIR -11 251 77 1950 104 4 18 chr12 50105653 50105787 -93680668 + AluSx SINE Alu 2 136 -176 2089 131 0 0 chr12 50105787 50106084 -93680371 + AluSg SINE Alu 1 297 -13 2404 75 0 3 chr12 50106086 50106391 -93680064 + AluSc SINE Alu 1 304 -5 1950 104 4 18 chr12 50106391 50106531 -93679924 + AluSx SINE Alu 137 275 -37 197 33 33 0 chr12 50106537 50106567 -93679888 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 492 100 111 33 chr12 50109274 50109364 -93677091 - AluJb SINE Alu -205 107 11 2281 92 3 0 chr12 50109426 50109730 -93676725 - AluSp SINE Alu -8 305 1 459 0 0 0 chr12 50109737 50109788 -93676667 + (TG)n Simple_repeat Simple_repeat 2 52 0 1410 186 106 11 chr12 50109822 50110096 -93676359 - AluJo SINE Alu 0 302 3 2219 66 7 0 chr12 50110164 50110450 -93676005 + AluY SINE Alu 3 290 -21 213 225 0 0 chr12 50111198 50111238 -93675217 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr12 50112701 50112724 -93673731 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 50112914 50112942 -93673513 + GC_rich Low_complexity Low_complexity 1 28 0 525 260 85 34 chr12 50113733 50113910 -93672545 + MIR3 SINE MIR 16 201 -7 1027 175 6 0 chr12 50114664 50114847 -93671608 + MIR SINE MIR 66 249 -13 251 304 0 35 chr12 50115167 50115282 -93671173 + C-rich Low_complexity Low_complexity 2 112 0 1465 138 8 32 chr12 50115604 50115850 -93670605 + AluSx SINE Alu 64 303 -9 198 333 58 0 chr12 50115911 50115980 -93670475 - L2 LINE L2 -13 3259 3187 227 341 146 9 chr12 50116056 50116276 -93670179 - L2 LINE L2 -212 3060 2811 1900 155 26 0 chr12 50116369 50116672 -93669783 + AluSx SINE Alu 1 311 -1 436 209 44 0 chr12 50116951 50117042 -93669413 + MIR SINE MIR 66 160 -102 926 127 0 96 chr12 50117045 50117260 -93669195 + FRAM SINE Alu 1 195 0 268 219 31 0 chr12 50117261 50117325 -93669130 + MIR SINE MIR 155 220 -42 828 128 0 0 chr12 50117326 50117443 -93669012 + FLAM_C SINE Alu 1 117 -26 21 0 0 0 chr12 50117452 50117473 -93668982 + AT_rich Low_complexity Low_complexity 1 21 0 200 33 0 33 chr12 50117473 50117503 -93668952 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2399 88 0 0 chr12 50117633 50117940 -93668515 + AluSg SINE Alu 1 307 -3 2229 105 0 3 chr12 50117940 50118244 -93668211 + AluSg SINE Alu 1 303 -7 204 348 58 0 chr12 50119113 50119182 -93667273 - L2 LINE L2 -50 3222 3150 1973 113 0 0 chr12 50119506 50119772 -93666683 - AluSx SINE Alu -46 266 1 1779 182 0 26 chr12 50119773 50120086 -93666369 - AluJo SINE Alu -7 305 1 328 147 27 13 chr12 50120123 50120198 -93666257 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 258 308 0 33 chr12 50120211 50120232 -93666223 + (TCCA)n Simple_repeat Simple_repeat 3 23 -67 2214 101 0 0 chr12 50120232 50120528 -93665927 - AluSx SINE Alu -16 296 1 258 308 0 33 chr12 50120528 50120597 -93665858 + (TCCA)n Simple_repeat Simple_repeat 23 90 0 1979 106 40 17 chr12 50121011 50121313 -93665142 - AluSx SINE Alu -1 311 3 216 309 173 0 chr12 50121484 50121594 -93664861 + L2 LINE L2 3143 3271 -1 363 264 66 41 chr12 50121956 50122077 -93664378 - L2 LINE L2 0 3272 3149 261 57 0 0 chr12 50122100 50122135 -93664320 + (TC)n Simple_repeat Simple_repeat 2 36 0 312 203 0 51 chr12 50123817 50123896 -93662559 + L2 LINE L2 3198 3272 0 192 97 0 0 chr12 50124947 50124978 -93661477 + (TG)n Simple_repeat Simple_repeat 2 32 0 315 301 16 91 chr12 50125250 50125436 -93661019 - MIR SINE MIR -4 258 87 350 299 21 14 chr12 50126110 50126254 -93660201 + (TTAGGG)n Simple_repeat Simple_repeat 3 147 0 351 0 0 0 chr12 50126604 50126643 -93659812 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 0 0 0 chr12 50126642 50126668 -93659787 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 810 159 8 0 chr12 50126682 50126814 -93659641 - FLAM_C SINE Alu 0 133 1 26 0 0 0 chr12 50129421 50129447 -93657008 + GC_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr12 50132196 50132228 -93654227 + (TG)n Simple_repeat Simple_repeat 1 32 0 2177 112 0 0 chr12 50133008 50133303 -93653152 + AluSg SINE Alu 1 295 -15 311 235 118 72 chr12 50133381 50133552 -93652903 - MIR SINE MIR -27 181 1 763 97 29 0 chr12 50134331 50134434 -93652021 - U6 snRNA snRNA -1 106 1 580 263 38 14 chr12 50134469 50134678 -93651777 + L2 LINE L2 1603 1816 -1498 2280 100 6 0 chr12 50134678 50134989 -93651466 - AluSq SINE Alu 0 313 1 671 248 188 20 chr12 50134989 50135356 -93651099 + L2 LINE L2 2687 3142 -171 333 0 0 0 chr12 50138078 50138115 -93648340 + (TG)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr12 50138114 50138134 -93648321 + (CG)n Simple_repeat Simple_repeat 2 21 0 * 219 69 0 0 chr12 50138315 50138344 -93648111 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 204 216 0 0 chr12 50139086 50139137 -93647318 + (TG)n Simple_repeat Simple_repeat 1 51 0 306 274 0 143 chr12 50141377 50141545 -93644910 - MIR3 SINE MIR -7 201 58 223 184 0 0 chr12 50141847 50141885 -93644570 + (CCCTAG)n Simple_repeat Simple_repeat 2 39 0 776 165 24 0 chr12 50142227 50142354 -93644101 + AluJo SINE Alu 7 136 -176 2242 87 0 16 chr12 50142373 50142509 -93643946 + AluSx SINE Alu 1 138 -174 2220 98 3 0 chr12 50142509 50142815 -93643640 + AluY SINE Alu 1 307 -4 2242 87 0 16 chr12 50142815 50142989 -93643466 + AluSx SINE Alu 138 306 -6 483 268 49 33 chr12 50143126 50143309 -93643146 + MIR3 SINE MIR 16 201 -7 825 214 9 51 chr12 50144939 50145154 -93641301 - MER58A DNA MER1_type -15 209 4 1873 164 0 13 chr12 50145393 50145703 -93640752 - AluSx SINE Alu -6 306 1 1252 172 46 42 chr12 50145705 50145966 -93640489 - AluJb SINE Alu -11 301 40 2256 108 0 0 chr12 50146058 50146364 -93640091 - AluSq SINE Alu -7 306 1 664 219 8 11 chr12 50146604 50146783 -93639672 + L1ME2 LINE L1 6013 6168 -2 383 228 0 87 chr12 50146786 50146913 -93639542 + MLT1J LTR MaLR 100 215 -296 593 226 51 72 chr12 50146956 50147151 -93639304 + MLT1J LTR MaLR 230 420 -91 560 75 194 0 chr12 50147196 50147289 -93639166 - HY1 scRNA scRNA 0 112 2 1917 159 10 0 chr12 50147300 50147601 -93638854 - AluJb SINE Alu -8 304 1 747 89 20 0 chr12 50147605 50147706 -93638749 - AluSg/x SINE Alu -14 298 196 2056 148 3 7 chr12 50147722 50148035 -93638420 - AluSx SINE Alu -8 304 1 2368 82 0 28 chr12 50148068 50148387 -93638068 - AluY SINE Alu -1 310 1 248 0 31 0 chr12 50148387 50148419 -93638036 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1830 146 7 14 chr12 50148419 50148706 -93637749 - AluSq SINE Alu -28 285 1 1088 188 33 36 chr12 50149092 50149368 -93637087 - AluSx SINE Alu -11 301 27 1064 151 21 31 chr12 50149435 50149616 -93636839 + AluJb SINE Alu 114 294 -18 2282 119 0 13 chr12 50149616 50149928 -93636527 + AluSg SINE Alu 1 308 -2 2116 136 7 10 chr12 50149940 50150250 -93636205 + AluSx SINE Alu 1 309 -3 372 94 0 0 chr12 50150273 50150326 -93636129 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 561 65 39 0 chr12 50150337 50150414 -93636041 + U6 snRNA snRNA 1 80 -27 1854 103 4 0 chr12 50150435 50150668 -93635787 + AluSx SINE Alu 2 235 -77 758 274 32 5 chr12 50150787 50150973 -93635482 - MIR SINE MIR -5 257 67 192 109 43 65 chr12 50152034 50152080 -93634375 - L2 LINE L2 0 3313 3269 900 301 76 29 chr12 50152310 50152744 -93633711 - L2 LINE L2 -30 3242 2790 211 224 0 41 chr12 50152982 50153031 -93633424 + G-rich Low_complexity Low_complexity 4 50 0 637 190 0 0 chr12 50153139 50153239 -93633216 - FLAM_A SINE Alu -42 100 1 977 99 8 0 chr12 50153435 50153566 -93632889 + AluJo SINE Alu 2 133 -169 276 188 0 0 chr12 50153581 50153629 -93632826 + MER44D DNA MER2_type 1 48 -657 2957 114 6 77 chr12 50153678 50153712 -93632743 + MER44D DNA MER2_type 49 84 -2403 2426 80 6 13 chr12 50153712 50154023 -93632432 + AluSp SINE Alu 1 309 -4 2957 114 6 77 chr12 50154023 50154261 -93632194 + MER44D DNA MER2_type 84 337 -2150 955 177 12 0 chr12 50154261 50154425 -93632030 + AluJo SINE Alu 137 302 0 2957 114 6 77 chr12 50154425 50154557 -93631898 + MER44D DNA MER2_type 337 464 -2023 2327 75 10 7 chr12 50154557 50154849 -93631606 + AluSc SINE Alu 1 293 -16 2957 114 6 77 chr12 50154849 50154978 -93631477 + MER44D DNA MER2_type 464 601 -4 863 219 122 0 chr12 50154989 50155194 -93631261 - MIR SINE MIR -30 232 3 2458 83 3 13 chr12 50155450 50155763 -93630692 + AluSq SINE Alu 1 310 -3 1005 187 5 43 chr12 50155779 50155966 -93630489 + FAM SINE Alu 1 47 -2 397 270 169 117 chr12 50156005 50156328 -93630127 + L2 LINE L2 2804 3162 -151 792 156 0 16 chr12 50156328 50156456 -93629999 + FLAM_C SINE Alu 1 126 -7 397 270 169 117 chr12 50156456 50156610 -93629845 + L2 LINE L2 3162 3306 -7 592 299 129 13 chr12 50156618 50156842 -93629613 - L3 LINE CR1 -21 1556 1307 2479 93 0 0 chr12 50157040 50157350 -93629105 - AluSx SINE Alu -2 310 1 2134 108 0 3 chr12 50157633 50157920 -93628535 - AluSg SINE Alu -24 286 1 532 268 66 20 chr12 50158132 50158330 -93628125 + MIR SINE MIR 36 242 -20 585 226 61 0 chr12 50159629 50159744 -93626711 + MIR SINE MIR 56 177 -85 377 169 0 14 chr12 50160566 50160637 -93625818 - MER41D LTR ERV1 0 557 488 27 0 0 0 chr12 50161693 50161720 -93624735 + AT_rich Low_complexity Low_complexity 1 27 0 2364 97 3 0 chr12 50162597 50162895 -93623560 + AluSp SINE Alu 1 299 -14 23 54 0 0 chr12 50164728 50164765 -93621690 + GC_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr12 50165106 50165126 -93621329 + (CAG)n Simple_repeat Simple_repeat 2 21 0 516 235 119 27 chr12 50165477 50165638 -93620817 - MIR SINE MIR -65 143 15 2415 62 14 0 chr12 50165955 50166245 -93620210 - AluSx SINE Alu -8 304 11 1733 124 124 14 chr12 50166248 50166523 -93619932 - AluSx SINE Alu -7 305 1 1227 108 11 16 chr12 50166555 50166740 -93619715 - AluSq SINE Alu -29 284 101 985 257 14 17 chr12 50167197 50167489 -93618966 - MER102b DNA MER1_type 0 341 51 618 280 30 24 chr12 50167554 50167722 -93618733 + MIR3 SINE MIR 22 190 -18 1908 151 0 40 chr12 50167871 50168196 -93618259 - AluJo SINE Alu 0 312 1 297 196 124 21 chr12 50168563 50168660 -93617795 - L1MC4a LINE L1 -1628 6180 6074 11417 26 1 104 chr12 50168708 50170254 -93616201 + SVA Other Other 1 1386 0 1247 138 0 20 chr12 50170322 50170518 -93615937 + AluSg/x SINE Alu 119 310 0 1672 172 59 10 chr12 50171126 50171250 -93615205 + AluJo SINE Alu 1 118 -194 183 42 0 0 chr12 50171250 50171274 -93615181 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1672 172 59 10 chr12 50171274 50171439 -93615016 + AluJo SINE Alu 118 304 -8 2231 110 3 10 chr12 50171439 50171571 -93614884 + AluSg SINE Alu 1 132 -178 2123 91 7 27 chr12 50171571 50171894 -93614561 + AluSg SINE Alu 2 310 0 2231 110 3 10 chr12 50171894 50172060 -93614395 + AluSg SINE Alu 132 297 -13 319 216 54 0 chr12 50172130 50172204 -93614251 + L1MC5 LINE L1 6722 6799 -1162 2201 77 4 4 chr12 50172341 50172613 -93613842 + AluSq SINE Alu 7 278 -35 2152 89 71 0 chr12 50172618 50172899 -93613556 + AluSp SINE Alu 1 301 -12 2209 96 0 4 chr12 50173131 50173433 -93613022 + AluSc SINE Alu 1 301 0 487 275 23 8 chr12 50173680 50173811 -93612644 + MIR3 SINE MIR 24 156 -52 687 90 90 0 chr12 50175217 50175364 -93611091 - AluSg/x SINE Alu 0 331 176 2241 167 22 66 chr12 50175869 50176247 -93610208 + L1MB7 LINE L1 5492 5885 -299 1679 159 46 13 chr12 50176247 50176549 -93609906 + AluJb SINE Alu 1 312 0 2209 96 10 3 chr12 50176556 50176847 -93609608 - AluSx SINE Alu -19 293 1 2241 167 22 66 chr12 50176847 50176962 -93609493 + L1MB7 LINE L1 5891 5971 -213 264 122 0 0 chr12 50176992 50177033 -93609422 + (TC)n Simple_repeat Simple_repeat 1 41 0 675 167 32 58 chr12 50177034 50177190 -93609265 - AluSg/x SINE Alu -24 286 135 410 325 103 20 chr12 50177497 50177838 -93608617 + L2 LINE L2 1784 2152 -1162 869 147 81 0 chr12 50177885 50178021 -93608434 - FRAM SINE Alu -10 166 20 27 0 0 0 chr12 50178037 50178064 -93608391 + AT_rich Low_complexity Low_complexity 1 27 0 1205 189 0 5 chr12 50178088 50178294 -93608161 - AluJo SINE Alu -107 205 1 430 276 148 54 chr12 50178349 50178512 -93607943 + L2 LINE L2 2521 2667 -605 351 0 0 0 chr12 50178512 50178551 -93607904 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1980 124 36 0 chr12 50178553 50178827 -93607628 - AluSx SINE Alu -13 299 16 430 276 148 54 chr12 50178827 50178973 -93607482 + L2 LINE L2 2667 2798 -474 2514 83 3 3 chr12 50178973 50179285 -93607170 - AluSp SINE Alu -1 312 1 430 276 148 54 chr12 50179285 50179401 -93607054 + L2 LINE L2 2798 2995 -277 2415 97 3 0 chr12 50179407 50179718 -93606737 - AluSx SINE Alu 0 312 1 2121 134 3 0 chr12 50179720 50180018 -93606437 - AluSx SINE Alu -10 302 4 1407 204 133 76 chr12 50180220 50180633 -93605822 - MLT2B1 LTR ERVL -3 517 70 1626 189 0 44 chr12 50180633 50180803 -93605652 - AluJo SINE Alu -8 304 153 2099 103 3 51 chr12 50180803 50181115 -93605340 - AluSq SINE Alu -16 297 1 1626 189 0 44 chr12 50181115 50181262 -93605193 - AluJo SINE Alu -159 153 1 1407 204 133 76 chr12 50181262 50181337 -93605118 - MLT2B1 LTR ERVL -450 70 1 2233 83 17 3 chr12 50181337 50181627 -93604828 + AluSc SINE Alu 1 294 -15 815 144 92 20 chr12 50181627 50181780 -93604675 + AluJo/FRAM SINE Alu 134 297 -15 2835 132 39 41 chr12 50181780 50182339 -93604116 - ERVL-B1 LTR ERVL -136 5628 5071 1332 132 11 0 chr12 50182339 50182528 -93603927 - AluSg/x SINE Alu -2 308 118 2032 127 4 0 chr12 50182558 50182833 -93603622 - AluSx SINE Alu -21 291 16 267 247 41 14 chr12 50182835 50182908 -93603547 + L2 LINE L2 2686 2760 -554 326 273 30 50 chr12 50183196 50183295 -93603160 - L1MC4 LINE L1 -1333 6709 6613 853 153 0 0 chr12 50183316 50183434 -93603021 - FLAM_C SINE Alu -25 118 1 1020 139 53 0 chr12 50183450 50183601 -93602854 + AluJb SINE Alu 132 290 -22 2747 35 0 3 chr12 50184305 50184616 -93601839 - AluY SINE Alu -1 310 1 54 0 0 0 chr12 50184970 50185024 -93601431 + AT_rich Low_complexity Low_complexity 1 54 0 1587 92 0 14 chr12 50185242 50185449 -93601006 - AluSg SINE Alu -106 204 1 670 194 61 41 chr12 50185466 50185662 -93600793 + L1MC5 LINE L1 6970 7169 -792 674 144 0 106 chr12 50185662 50185794 -93600661 + FLAM_C SINE Alu 1 118 -15 1864 154 17 7 chr12 50185850 50186149 -93600306 - AluJb SINE Alu -10 302 1 376 147 173 115 chr12 50186163 50186319 -93600136 + L1MC5 LINE L1 7144 7308 -653 388 162 97 97 chr12 50186349 50186423 -93600032 + L1MC4a LINE L1 5787 5860 -1948 1627 158 0 0 chr12 50186423 50186664 -93599791 - AluJb SINE Alu -71 241 1 388 162 97 97 chr12 50186664 50186743 -93599712 + L1MC4a LINE L1 5859 5940 -1868 540 283 57 6 chr12 50187044 50187203 -93599252 - L2 LINE L2 0 3272 3106 545 157 0 0 chr12 50187734 50187823 -93598632 - ERVL LTR ERVL -702 5062 4974 * 921 179 0 123 chr12 50187822 50188057 -93598398 - ERVL LTR ERVL -924 4840 4635 2071 92 7 56 chr12 50188057 50188361 -93598094 + AluSx SINE Alu 1 289 -23 315 122 0 0 chr12 50188361 50188410 -93598045 + (GA)n Simple_repeat Simple_repeat 1 49 0 1828 104 4 0 chr12 50188424 50188664 -93597791 + AluSp SINE Alu 58 298 -15 496 133 60 0 chr12 50188664 50188747 -93597708 - ERVL LTR ERVL -1121 4643 4556 31 0 0 0 chr12 50188886 50188917 -93597538 + AT_rich Low_complexity Low_complexity 1 31 0 485 278 70 86 chr12 50188947 50189274 -93597181 - L1ME4a LINE L1 -11 6110 5789 207 271 188 10 chr12 50189489 50189585 -93596870 - L2 LINE L2 -211 3061 2949 267 339 83 0 chr12 50189654 50189763 -93596692 - L2 LINE L2 -8 3264 3147 1252 181 25 0 chr12 50189962 50190166 -93596289 - AluJo SINE Alu -19 293 85 498 233 35 35 chr12 50190289 50190491 -93595964 - L1ME4a LINE L1 -757 5389 5188 490 93 0 0 chr12 50190606 50190681 -93595774 + L1MA2 LINE L1 6230 6304 0 226 213 74 46 chr12 50190788 50190896 -93595559 - L1ME4a LINE L1 -1066 5080 4970 291 247 0 0 chr12 50190946 50191019 -93595436 - L1ME4a LINE L1 -1278 4868 4796 1322 119 0 0 chr12 50191022 50191198 -93595257 - AluSg/x SINE Alu 0 312 137 1862 152 35 0 chr12 50191201 50191484 -93594971 - AluJb SINE Alu -19 293 1 1148 140 61 13 chr12 50191493 50191722 -93594733 - L1MB3 LINE L1 0 6183 5944 241 196 36 0 chr12 50191867 50191923 -93594532 + AluJb SINE Alu 88 145 -157 847 138 0 0 chr12 50191925 50192055 -93594400 + AluSg/x SINE Alu 174 303 -7 784 141 25 0 chr12 50192074 50192195 -93594260 + AluJo SINE Alu 11 134 -178 22 0 0 0 chr12 50192195 50192217 -93594238 + AT_rich Low_complexity Low_complexity 1 22 0 213 94 0 0 chr12 50392977 50393009 -93393446 + (TA)n Simple_repeat Simple_repeat 2 33 0 1485 126 84 8 chr12 50393009 50393272 -93393183 - AluJo SINE Alu -29 283 1 1806 130 24 7 chr12 50393558 50393851 -93392604 - AluJb SINE Alu 0 312 15 3022 129 11 47 chr12 50393862 50393949 -93392506 - L1MB2 LINE L1 -40 6131 6042 2484 43 0 3 chr12 50393949 50394254 -93392201 - AluY SINE Alu -7 304 1 3022 129 11 47 chr12 50394254 50394701 -93391754 - L1MB2 LINE L1 -129 6042 5616 1179 158 10 10 chr12 50394724 50394927 -93391528 - AluJo SINE Alu -23 289 87 925 129 59 32 chr12 50394927 50395113 -93391342 - L1MB2 LINE L1 -689 5491 5301 2262 98 0 0 chr12 50395120 50395417 -93391038 - AluSq SINE Alu -16 297 1 1450 183 16 45 chr12 50395424 50395736 -93390719 - AluJb SINE Alu -9 303 1 1951 113 48 10 chr12 50395799 50396092 -93390363 + AluSq SINE Alu 5 308 -5 1260 89 0 0 chr12 50396092 50396261 -93390194 + AluSg/x SINE Alu 134 302 -10 852 169 0 0 chr12 50396497 50396639 -93389816 + AluJb SINE Alu 149 290 -22 316 292 30 12 chr12 50396699 50396867 -93389588 - L1M4 LINE L1 -2171 3975 3805 1647 163 10 28 chr12 50396875 50397009 -93389446 + AluSx SINE Alu 1 136 -180 2035 129 3 0 chr12 50397009 50397312 -93389143 + AluSc SINE Alu 1 304 -5 2154 103 0 7 chr12 50397314 50397615 -93388840 + AluSx SINE Alu 1 299 -13 1647 163 10 28 chr12 50397615 50397798 -93388657 + AluSx SINE Alu 137 316 0 799 157 140 72 chr12 50398140 50398376 -93388079 - L1M4 LINE L1 -2099 4047 3796 678 236 139 107 chr12 50398500 50398758 -93387697 + MLT1H1 LTR MaLR 3 251 -304 756 155 9 0 chr12 50398758 50398874 -93387581 - FLAM_C SINE Alu -16 117 1 678 236 139 107 chr12 50398874 50399180 -93387275 + MLT1H1 LTR MaLR 251 555 0 2298 86 0 3 chr12 50399220 50399524 -93386931 - AluY SINE Alu -8 303 1 1384 179 22 58 chr12 50399636 50399949 -93386506 - AluJo SINE Alu -10 302 1 1907 146 0 25 chr12 50400001 50400316 -93386139 + AluSg SINE Alu 1 307 -3 2205 97 3 0 chr12 50400709 50401007 -93385448 + AluSp SINE Alu 1 299 -14 372 83 0 0 chr12 50401015 50401063 -93385392 + Alu SINE Alu 1 48 -252 2072 107 20 0 chr12 50401093 50401392 -93385063 - AluSc SINE Alu -4 305 1 811 153 0 0 chr12 50401402 50401526 -93384929 - AluSq/x SINE Alu -189 124 1 1133 137 0 11 chr12 50401541 50401724 -93384731 + FRAM SINE Alu 1 176 0 1498 159 9 61 chr12 50401803 50402129 -93384326 + AluJo SINE Alu 2 310 -2 1677 163 18 3 chr12 50402214 50402497 -93383958 + AluJb SINE Alu 5 291 -21 2094 116 0 6 chr12 50402505 50402816 -93383639 + AluSc SINE Alu 1 309 0 551 238 97 63 chr12 50403051 50403257 -93383198 - MLT1F1 LTR MaLR -258 309 97 2131 104 0 0 chr12 50403261 50403575 -93382880 + AluSq SINE Alu 1 314 0 1671 150 35 0 chr12 50403835 50404121 -93382334 + AluJb SINE Alu 1 296 -16 1120 160 86 115 chr12 50404389 50404454 -93382001 - L1MB8 LINE L1 -5 6173 6108 2169 105 13 0 chr12 50404454 50404758 -93381697 + AluSx SINE Alu 1 308 -4 1120 160 86 115 chr12 50404758 50405036 -93381419 - L1MB8 LINE L1 -70 6108 5843 3474 169 47 77 chr12 50405141 50405449 -93381006 - L1MB7 LINE L1 -25 6159 5843 1997 130 13 0 chr12 50405449 50405748 -93380707 - AluSx SINE Alu -9 303 1 3474 169 47 77 chr12 50405748 50405824 -93380631 - L1MB7 LINE L1 -341 5843 5766 2014 114 0 0 chr12 50405824 50406105 -93380350 - AluSg SINE Alu -29 281 1 3474 169 47 77 chr12 50406105 50406613 -93379842 - L1MB7 LINE L1 -418 5766 5287 1963 116 3 27 chr12 50406627 50406928 -93379527 + AluSx SINE Alu 1 294 -18 800 122 9 0 chr12 50406928 50407043 -93379412 - AluJb SINE Alu -196 116 1 377 132 66 0 chr12 50407046 50407122 -93379333 - L1MB7 LINE L1 -830 5316 5236 3164 129 50 42 chr12 50407128 50407670 -93378785 - MER21A LTR ERV1 -7 924 379 1063 155 134 29 chr12 50407678 50407763 -93378692 - MER21A LTR ERV1 -667 264 189 2032 120 0 22 chr12 50407763 50408079 -93378376 + AluSx SINE Alu 1 309 -3 1063 155 134 29 chr12 50408079 50408232 -93378223 - MER21A LTR ERV1 -742 189 1 1013 160 5 10 chr12 50408232 50408426 -93378029 - L1MB7 LINE L1 -903 5243 5051 2139 79 0 54 chr12 50408426 50408561 -93377894 + AluSq SINE Alu 1 142 -171 2227 112 0 0 chr12 50408561 50408866 -93377589 + AluSg SINE Alu 1 305 -5 2139 79 0 54 chr12 50408866 50409045 -93377410 + AluSq SINE Alu 142 298 -15 1285 201 28 98 chr12 50409120 50409519 -93376936 - L2 LINE L2 -756 2558 2188 2212 83 0 3 chr12 50409528 50409829 -93376626 - AluY SINE Alu -11 300 1 1981 137 0 3 chr12 50409875 50410174 -93376281 - AluSx SINE Alu -12 300 3 348 149 103 28 chr12 50410197 50410304 -93376151 - Charlie2 DNA MER1_type 0 2862 2748 621 194 167 0 chr12 50410310 50410454 -93376001 + AluJo SINE Alu 44 211 -101 258 219 0 0 chr12 50410454 50410518 -93375937 + (TA)n Simple_repeat Simple_repeat 1 64 0 1753 170 0 0 chr12 50410553 50410835 -93375620 + AluJo SINE Alu 1 282 -30 453 189 63 18 chr12 50410853 50410964 -93375491 - Charlie2 DNA MER1_type -137 2725 2610 355 296 96 16 chr12 50410966 50411091 -93375364 + L1MEd LINE L1 1 135 -5984 1534 150 55 22 chr12 50411158 50411459 -93374996 - AluJo SINE Alu 0 310 1 1486 194 17 0 chr12 50411553 50411852 -93374603 + AluJo SINE Alu 1 304 -8 2222 86 0 13 chr12 50411870 50412174 -93374281 + AluY SINE Alu 1 300 -11 1109 119 0 0 chr12 50412324 50412484 -93373971 + AluSg/x SINE Alu 141 300 -12 837 161 13 7 chr12 50412487 50412642 -93373813 + AluJo/FRAM SINE Alu 137 292 -20 932 130 43 16 chr12 50412642 50412826 -93373629 - L1M4 LINE L1 -1001 5145 4957 1916 192 66 21 chr12 50412826 50413263 -93373192 - MLT1C LTR MaLR 0 467 11 466 153 0 0 chr12 50413270 50413342 -93373113 - L1M4 LINE L1 -1185 4961 4890 * 2456 175 31 31 chr12 50413340 50413693 -93372762 - L1MDa LINE L1 -6056 484 129 2061 121 14 0 chr12 50413693 50413990 -93372465 - AluSx SINE Alu -11 301 1 2456 175 31 31 chr12 50413990 50414092 -93372363 - L1MDa LINE L1 -6410 130 29 311 249 97 55 chr12 50414092 50414257 -93372198 - L1M4 LINE L1 -1556 4590 4419 487 192 224 60 chr12 50414271 50414552 -93371903 + MER4C LTR ERV1 1 327 -138 844 114 0 0 chr12 50414553 50414667 -93371788 + AluSq/x SINE Alu 2 115 -197 1662 103 119 100 chr12 50414745 50414931 -93371524 - MER51B LTR ERV1 0 377 196 2041 123 0 16 chr12 50414931 50415241 -93371214 + AluSx SINE Alu 5 309 -3 1662 103 119 100 chr12 50415241 50415424 -93371031 - MER51B LTR ERV1 -181 196 1 2834 126 73 22 chr12 50415424 50415562 -93370893 - LTR62 LTR ERVK -6 713 583 3668 177 49 25 chr12 50415562 50416017 -93370438 + MER50 LTR ERV1 1 444 -290 1760 130 0 71 chr12 50416017 50416154 -93370301 + AluSx SINE Alu 1 146 -166 2413 70 0 0 chr12 50416154 50416456 -93369999 + AluY SINE Alu 1 302 -9 2179 101 0 10 chr12 50416463 50416771 -93369684 + AluY SINE Alu 5 309 -2 1760 130 0 71 chr12 50416771 50416948 -93369507 + AluSx SINE Alu 152 300 -12 3668 177 49 25 chr12 50416948 50417209 -93369246 + MER50 LTR ERV1 444 734 0 2834 126 73 22 chr12 50417209 50417562 -93368893 - LTR62 LTR ERVK -136 583 197 2316 65 0 3 chr12 50417566 50417860 -93368595 - AluSq SINE Alu -20 293 1 2142 77 14 3 chr12 50417867 50418164 -93368291 - AluSx SINE Alu -12 300 1 651 173 128 32 chr12 50418164 50418320 -93368135 - MER21B LTR ERV1 -563 300 130 1782 143 4 0 chr12 50418360 50418626 -93367829 + AluSp SINE Alu 1 267 -46 399 173 12 12 chr12 50418626 50418707 -93367748 + L1MB7 LINE L1 6031 6111 -73 1947 121 3 23 chr12 50418713 50419018 -93367437 + AluSx SINE Alu 1 299 -13 930 159 6 12 chr12 50419068 50419231 -93367224 - AluJb SINE Alu -15 297 136 1204 116 12 0 chr12 50419363 50419536 -93366919 - AluSc SINE Alu -12 297 123 1108 110 0 7 chr12 50419706 50419861 -93366594 - Tigger1 DNA MER2_type -187 2231 2078 351 292 15 23 chr12 50420027 50420157 -93366298 - Charlie2 DNA MER1_type -2661 201 73 1633 164 27 0 chr12 50420177 50420469 -93365986 + AluSq SINE Alu 1 300 -13 327 313 49 41 chr12 50420469 50420646 -93365809 + L1M4 LINE L1 754 928 -5614 2002 135 13 0 chr12 50420646 50420950 -93365505 + AluSx SINE Alu 1 308 -4 327 313 49 41 chr12 50420950 50421060 -93365395 + L1M4 LINE L1 928 972 -5570 1556 124 23 141 chr12 50421060 50421408 -93365047 + AluYb8 SINE Alu 2 308 0 327 313 49 41 chr12 50421408 50421443 -93365012 + L1M4 LINE L1 972 1005 -5537 2191 113 0 7 chr12 50421450 50421760 -93364695 + AluSg SINE Alu 1 308 -2 2193 92 3 3 chr12 50421779 50422083 -93364372 + AluSc SINE Alu 1 304 -5 1858 113 35 0 chr12 50422083 50422365 -93364090 + AluSq SINE Alu 12 303 -10 2522 36 0 16 chr12 50422366 50422674 -93363781 + AluY SINE Alu 1 303 -8 1430 192 78 44 chr12 50422675 50422930 -93363525 + L1M4 LINE L1 3310 3555 -3089 2119 78 3 0 chr12 50422930 50423236 -93363219 + AluSp SINE Alu 1 307 0 1430 192 78 44 chr12 50423236 50423362 -93363093 + L1M4 LINE L1 3555 3675 -2969 1508 161 11 25 chr12 50423362 50423669 -93362786 + AluJb SINE Alu 1 303 0 1430 192 78 44 chr12 50423669 50423699 -93362756 + L1M4 LINE L1 3675 3703 -2941 2158 106 0 7 chr12 50423699 50424002 -93362453 + AluSx SINE Alu 1 301 -11 1430 192 78 44 chr12 50424002 50424027 -93362428 + L1M4 LINE L1 3703 3726 -2918 2463 66 0 0 chr12 50424027 50424331 -93362124 + AluY SINE Alu 1 304 -7 1430 192 78 44 chr12 50424331 50424414 -93362041 + L1M4 LINE L1 3726 3853 -2791 776 169 15 0 chr12 50424416 50424546 -93361909 + AluJb SINE Alu 2 133 -179 2234 218 56 37 chr12 50424547 50424709 -93361746 + L1M4 LINE L1 3843 4000 -2644 1660 169 3 7 chr12 50424709 50425010 -93361445 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 50425010 50425278 -93361177 + L1M4 LINE L1 4000 4261 -2383 1823 144 10 3 chr12 50425278 50425576 -93360879 + AluSx SINE Alu 1 300 -12 2234 218 56 37 chr12 50425576 50425818 -93360637 + L1M4 LINE L1 4261 4529 -2115 687 236 0 0 chr12 50425823 50425967 -93360488 + L1MB7 LINE L1 5747 5890 -294 717 185 71 46 chr12 50425969 50426207 -93360248 + LTR37B LTR ERV1 225 468 0 551 243 14 14 chr12 50426208 50426348 -93360107 - L2 LINE L2 -1854 1460 1321 1355 113 14 32 chr12 50426365 50426414 -93360041 + AluSg/x SINE Alu 85 133 -177 2149 85 0 13 chr12 50426414 50426721 -93359734 + AluY SINE Alu 1 303 -8 1355 113 14 32 chr12 50426721 50426892 -93359563 + AluSg/x SINE Alu 133 301 -9 977 249 188 22 chr12 50426896 50427305 -93359150 - L2 LINE L2 -2004 1310 834 1429 161 36 0 chr12 50427330 50427579 -93358876 - AluJo SINE Alu -20 292 35 2333 73 3 0 chr12 50427815 50428116 -93358339 + AluSp SINE Alu 1 302 -11 1128 129 0 17 chr12 50428116 50428294 -93358161 + AluSg/x SINE Alu 132 306 -3 1425 224 69 58 chr12 50428298 50428731 -93357724 - MER21B LTR ERV1 -411 452 15 854 140 0 22 chr12 50428734 50428870 -93357585 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr12 50429195 50429217 -93357238 + (TA)n Simple_repeat Simple_repeat 2 23 0 610 213 9 0 chr12 50429227 50429335 -93357120 - FLAM_C SINE Alu -32 111 3 2094 101 0 23 chr12 50429345 50429651 -93356804 - AluSx SINE Alu -13 299 1 935 166 0 4 chr12 50429694 50429903 -93356552 + AluJb SINE Alu 5 295 -17 1777 117 0 0 chr12 50430683 50430931 -93355524 + AluSq SINE Alu 1 248 -65 590 298 6 0 chr12 50431046 50431204 -93355251 + MIR SINE MIR 80 238 -24 22 0 0 0 chr12 50431255 50431277 -93355178 + AT_rich Low_complexity Low_complexity 1 22 0 1664 160 14 3 chr12 50431285 50431572 -93354883 + AluJb SINE Alu 1 290 -22 418 40 162 0 chr12 50431574 50431648 -93354807 + Tigger3(Golem) DNA MER2_type 2431 2516 -513 1883 126 35 0 chr12 50431648 50431934 -93354521 - AluSx SINE Alu -16 296 1 442 149 92 0 chr12 50431934 50432021 -93354434 + Tigger3(Golem) DNA MER2_type 2796 2890 -139 1434 58 16 0 chr12 50432146 50432335 -93354120 - Tigger1 DNA MER2_type -399 2019 1828 2119 84 44 10 chr12 50432340 50432638 -93353817 + AluSx SINE Alu 5 312 0 2721 152 32 11 chr12 50432640 50433102 -93353353 - Tigger1 DNA MER2_type -981 1437 966 2069 124 7 3 chr12 50433112 50433419 -93353036 - AluSx SINE Alu -4 308 1 2171 73 0 11 chr12 50433443 50433761 -93352694 - AluY SINE Alu 0 315 1 757 228 73 119 chr12 50433850 50434219 -93352236 + L2 LINE L2 1105 1456 -1858 659 223 115 122 chr12 50434303 50434729 -93351726 - MLT1J LTR MaLR -53 458 36 2259 89 3 0 chr12 50434779 50435082 -93351373 + AluSp SINE Alu 1 304 -9 575 180 25 49 chr12 50435082 50435197 -93351258 - FLAM_A SINE Alu -188 114 1 3904 248 80 50 chr12 50435210 50435865 -93350590 + L2 LINE L2 1391 2025 -1289 1616 170 37 3 chr12 50435865 50436159 -93350296 - AluJo SINE Alu -8 304 1 3904 248 80 50 chr12 50436159 50436269 -93350186 + L2 LINE L2 2025 2130 -1184 2203 88 7 0 chr12 50436269 50436563 -93349892 - AluSg SINE Alu -12 298 3 3904 248 80 50 chr12 50436563 50436897 -93349558 + L2 LINE L2 2130 2453 -861 1971 104 0 24 chr12 50436897 50437213 -93349242 + AluY SINE Alu 1 309 0 3904 248 80 50 chr12 50437213 50437576 -93348879 + L2 LINE L2 2453 2900 -414 558 190 52 0 chr12 50437578 50437694 -93348761 + L1MCa LINE L1 1 122 -6304 299 170 0 0 chr12 50437705 50437752 -93348703 - MER66B LTR ERV1 -141 345 299 2482 50 0 3 chr12 50437807 50438107 -93348348 + AluY SINE Alu 1 299 -12 1293 202 6 96 chr12 50438115 50438447 -93348008 + AluJo SINE Alu 1 302 0 1950 137 3 3 chr12 50438456 50438762 -93347693 + AluSx SINE Alu 1 306 -6 662 225 50 88 chr12 50438762 50438938 -93347517 + L1M4 LINE L1 3298 3465 -2681 2237 74 0 0 chr12 50438938 50439222 -93347233 + AluY SINE Alu 1 284 -27 662 225 50 88 chr12 50439222 50439297 -93347158 + L1M4 LINE L1 3465 3541 -2605 717 239 135 89 chr12 50439525 50439872 -93346583 - MER21B LTR ERV1 -204 659 297 2051 101 27 0 chr12 50439872 50440168 -93346287 - AluSq SINE Alu -9 304 1 1240 187 63 25 chr12 50440362 50440646 -93345809 + AluJo SINE Alu 1 295 -17 227 328 16 11 chr12 50440646 50440767 -93345688 + GA-rich Low_complexity Low_complexity 1 121 0 1912 119 43 13 chr12 50440767 50441069 -93345386 + AluSx SINE Alu 1 311 -1 537 233 52 23 chr12 50441072 50441244 -93345211 - Tigger1 DNA MER2_type -981 1437 1261 318 274 34 74 chr12 50441629 50441804 -93344651 - L2 LINE L2 -1749 1565 1398 360 268 33 41 chr12 50441824 50441946 -93344509 + FLAM_A SINE Alu 1 113 -20 1239 144 16 103 chr12 50441952 50442271 -93344184 - AluSp SINE Alu -12 291 1 899 114 0 21 chr12 50442318 50442458 -93343997 + Tigger1 DNA MER2_type 55 191 -2227 1058 244 11 11 chr12 50442460 50442743 -93343712 + AluSq SINE Alu 1 283 -30 1036 137 0 49 chr12 50442785 50442968 -93343487 + AluSp SINE Alu 137 310 -3 2128 74 3 11 chr12 50443101 50443386 -93343069 + AluY SINE Alu 1 283 -28 811 86 0 0 chr12 50443281 50443386 -93343069 + AluY SINE Alu 179 312 0 213 0 0 35 chr12 50443386 50443415 -93343040 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1959 112 27 3 chr12 50443442 50443737 -93342718 + AluSx SINE Alu 1 302 -10 3145 119 23 25 chr12 50443738 50444107 -93342348 + Tigger1 DNA MER2_type 181 549 -1869 2165 120 0 0 chr12 50444107 50444408 -93342047 + AluSx SINE Alu 3 303 -9 3145 119 23 25 chr12 50444408 50444741 -93341714 + Tigger1 DNA MER2_type 549 975 -1443 651 212 113 42 chr12 50444743 50444955 -93341500 + AluJo SINE Alu 2 228 -84 1214 156 9 5 chr12 50445097 50445321 -93341134 - AluSg/x SINE Alu -3 307 83 815 118 0 0 chr12 50445321 50445431 -93341024 - AluSq SINE Alu -63 250 141 1036 151 19 122 chr12 50446015 50446116 -93340339 - LTR62 LTR ERVK -430 289 179 1852 72 0 42 chr12 50446116 50446422 -93340033 - AluSq SINE Alu -20 293 1 2332 60 3 3 chr12 50446429 50446729 -93339726 - AluSx SINE Alu -12 300 1 1036 151 19 122 chr12 50446729 50446890 -93339565 - LTR62 LTR ERVK -546 173 47 2268 75 3 41 chr12 50446890 50447210 -93339245 + AluSq SINE Alu 1 308 -5 2016 117 10 3 chr12 50447211 50447501 -93338954 + AluSg SINE Alu 1 292 -18 2288 92 0 0 chr12 50448025 50448329 -93338126 + AluSg SINE Alu 1 304 -6 295 280 0 43 chr12 50448537 50448630 -93337825 - L2 LINE L2 -218 3054 2966 1766 163 3 7 chr12 50449177 50449478 -93336977 - AluJb SINE Alu -12 300 1 1342 142 87 45 chr12 50449524 50449593 -93336862 - L1MB8 LINE L1 0 6178 6113 2390 61 0 16 chr12 50449593 50449905 -93336550 + AluY SINE Alu 2 308 -3 1342 142 87 45 chr12 50449905 50450123 -93336332 - L1MB8 LINE L1 -65 6113 5879 2216 112 0 3 chr12 50450269 50450581 -93335874 + AluSq SINE Alu 1 311 -2 306 134 0 0 chr12 50450707 50450774 -93335681 + (GA)n Simple_repeat Simple_repeat 2 68 0 1690 179 3 6 chr12 50451096 50451408 -93335047 + AluJo SINE Alu 1 311 -1 736 307 94 37 chr12 50451534 50451938 -93334517 - MLT1K LTR MaLR -159 429 3 1205 185 0 0 chr12 50452028 50452255 -93334200 + AluJo SINE Alu 82 308 -4 500 317 27 33 chr12 50452304 50452487 -93333968 - L2 LINE L2 -81 3191 3010 1534 194 20 7 chr12 50452534 50452833 -93333622 - AluJb SINE Alu -9 303 1 856 147 0 22 chr12 50452840 50453038 -93333417 - FLAM_C SINE Alu 0 195 1 242 303 141 17 chr12 50453046 50453280 -93333175 + L2 LINE L2 2694 2956 -358 2072 86 28 17 chr12 50453334 50453625 -93332830 - AluSg SINE Alu -15 295 2 192 273 45 68 chr12 50453759 50453847 -93332608 + L2 LINE L2 3227 3312 -1 2004 122 7 3 chr12 50454138 50454441 -93332014 + AluSx SINE Alu 1 304 -8 2409 68 13 0 chr12 50454488 50454796 -93331659 + AluSp SINE Alu 1 312 -1 264 350 16 0 chr12 50454907 50455030 -93331425 + MIR3 SINE MIR 71 195 -13 2160 106 7 0 chr12 50455283 50455584 -93330871 + AluSx SINE Alu 1 303 -9 585 230 121 12 chr12 50456813 50456978 -93329477 - MIR SINE MIR -54 208 26 2066 104 4 0 chr12 50457189 50457468 -93328987 - AluSx SINE Alu -32 280 1 207 0 0 0 chr12 50457670 50457693 -93328762 + (TG)n Simple_repeat Simple_repeat 1 23 0 1869 126 17 27 chr12 50457768 50458069 -93328386 - AluSg SINE Alu 0 310 13 380 270 127 48 chr12 50458814 50459003 -93327452 + MIR SINE MIR 34 237 -25 1602 155 10 27 chr12 50459157 50459453 -93327002 - AluJo SINE Alu -9 303 13 189 262 93 93 chr12 50459470 50459577 -93326878 - L2 LINE L2 -15 3298 3192 410 94 16 0 chr12 50459672 50459736 -93326719 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 691 159 0 0 chr12 50459736 50459843 -93326612 - FLAM_C SINE Alu -35 108 2 23 33 0 0 chr12 50462655 50462685 -93323770 + GC_rich Low_complexity Low_complexity 1 30 0 186 40 0 0 chr12 50462810 50462818 -93323637 + (A)n Simple_repeat Simple_repeat 1 8 -17 2236 68 7 0 chr12 50462818 50463110 -93323345 - AluSq SINE Alu -19 294 1 186 40 0 0 chr12 50463110 50463126 -93323329 + (A)n Simple_repeat Simple_repeat 7 25 0 2017 97 20 13 chr12 50463447 50463746 -93322709 + AluSx SINE Alu 1 301 -11 1816 161 20 37 chr12 50464600 50464953 -93321502 - MER7A DNA MER2_type -1 345 1 2222 89 13 0 chr12 50465132 50465435 -93321020 + AluSp SINE Alu 1 307 -6 1788 145 23 7 chr12 50465455 50465758 -93320697 + AluJo SINE Alu 1 308 -4 191 119 71 0 chr12 50465778 50465820 -93320635 + GA-rich Low_complexity Low_complexity 2 46 0 2065 125 0 0 chr12 50465823 50466119 -93320336 + AluSq SINE Alu 3 298 -15 1724 163 91 39 chr12 50466282 50466643 -93319812 - MER21B LTR ERV1 -20 843 464 405 143 0 95 chr12 50466660 50466744 -93319711 - AluJo SINE Alu -174 138 63 1805 168 67 21 chr12 50466763 50467091 -93319364 - MER21B LTR ERV1 -387 476 134 310 220 9 31 chr12 50467223 50467329 -93319126 - MER21A LTR ERV1 -758 105 1 2200 119 0 0 chr12 50467353 50467663 -93318792 + AluSx SINE Alu 1 310 -2 614 191 16 8 chr12 50467672 50467798 -93318657 + FLAM_A SINE Alu 1 127 -6 390 21 0 0 chr12 50468025 50468072 -93318383 + (CA)n Simple_repeat Simple_repeat 1 47 0 201 74 0 0 chr12 50468291 50468318 -93318137 + (A)n Simple_repeat Simple_repeat 1 27 0 1654 161 0 27 chr12 50468591 50468890 -93317565 - AluJb SINE Alu -21 291 1 2129 112 0 0 chr12 50468901 50469196 -93317259 - AluSx SINE Alu -17 295 1 247 289 164 23 chr12 50469199 50469327 -93317128 + L2 LINE L2 3124 3269 -44 258 136 0 0 chr12 50469597 50469641 -93316814 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 1905 129 20 3 chr12 50469641 50469944 -93316511 - AluSx SINE Alu -4 308 1 2188 116 0 3 chr12 50469975 50470285 -93316170 - AluSq SINE Alu -4 309 1 483 190 100 0 chr12 50470335 50470435 -93316020 - Charlie2a DNA MER1_type -1230 1632 1523 1740 143 0 62 chr12 50470460 50470782 -93315673 - AluJo SINE Alu -10 302 1 1712 164 0 13 chr12 50470803 50471102 -93315353 - AluJb SINE Alu -17 295 1 1854 130 20 3 chr12 50471158 50471451 -93315004 + AluSx SINE Alu 1 298 -14 607 167 0 0 chr12 50471594 50471696 -93314759 - AluJb SINE Alu 0 312 211 351 292 15 23 chr12 50471712 50471842 -93314613 - Charlie2 DNA MER1_type -2581 201 73 1880 159 0 0 chr12 50471862 50472170 -93314285 + AluSx SINE Alu 1 308 -4 469 129 0 0 chr12 50472559 50472629 -93313826 - AluSp/q SINE Alu -14 299 230 373 263 64 51 chr12 50472898 50473054 -93313401 - MIR SINE MIR -79 183 26 218 337 12 12 chr12 50473054 50473140 -93313315 - L2 LINE L2 -1395 1919 1834 377 267 42 96 chr12 50473187 50473313 -93313142 + L1M4b LINE L1 20 128 -6731 1523 143 19 30 chr12 50473313 50473579 -93312876 + AluJo SINE Alu 1 263 -49 377 267 42 96 chr12 50473579 50473692 -93312763 + L1M4b LINE L1 128 246 -6613 2064 122 3 3 chr12 50473896 50474199 -93312256 - AluSx SINE Alu -9 303 1 379 169 17 0 chr12 50474214 50474273 -93312182 - AluS SINE Alu -242 60 1 2379 75 0 3 chr12 50474390 50474719 -93311736 + AluY SINE Alu 1 311 0 313 281 137 38 chr12 50474724 50474987 -93311468 + L2 LINE L2 1796 2084 -1230 2269 94 0 3 chr12 50475044 50475352 -93311103 - AluSq SINE Alu -6 307 1 675 249 28 48 chr12 50475837 50476037 -93310418 + MLT1L LTR MaLR 362 558 -57 1614 181 34 0 chr12 50476037 50476330 -93310125 - AluJo SINE Alu -9 303 1 675 249 28 48 chr12 50476330 50476378 -93310077 + MLT1L LTR MaLR 558 605 -10 2237 67 3 0 chr12 50476378 50476686 -93309769 + AluY SINE Alu 1 309 0 580 303 137 47 chr12 50476727 50476865 -93309590 + L2 LINE L2 2266 2390 -924 662 231 15 0 chr12 50476865 50476995 -93309460 - FLAM_A SINE Alu -1 132 1 580 303 137 47 chr12 50476995 50477322 -93309133 + L2 LINE L2 2390 2773 -541 1754 142 20 23 chr12 50477327 50477630 -93308825 + AluJo SINE Alu 1 302 -10 956 130 74 2 chr12 50477631 50477862 -93308593 + AluSx SINE Alu 3 303 -9 26 0 0 0 chr12 50477862 50477888 -93308567 + AT_rich Low_complexity Low_complexity 1 26 0 474 310 92 67 chr12 50477932 50478335 -93308120 + L2 LINE L2 2813 3225 -47 1755 156 13 3 chr12 50478433 50478741 -93307714 - AluJo SINE Alu -1 311 1 247 356 18 37 chr12 50478802 50478965 -93307490 - L2 LINE L2 -634 2680 2521 1833 154 7 0 chr12 50478972 50479265 -93307190 + AluJo SINE Alu 3 297 -15 725 187 7 36 chr12 50479265 50479404 -93307051 + AluJo SINE Alu 2 136 -176 2155 81 0 3 chr12 50479411 50479694 -93306761 + AluY SINE Alu 1 282 -29 1977 99 3 18 chr12 50479720 50480002 -93306453 + AluSq SINE Alu 1 278 -35 1587 99 4 17 chr12 50480136 50480369 -93306086 - AluSq SINE Alu -81 232 3 2065 117 3 13 chr12 50480391 50480700 -93305755 - AluSx SINE Alu 0 312 7 216 0 0 0 chr12 50480724 50480748 -93305707 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1768 153 0 7 chr12 50480748 50481035 -93305420 - AluJb SINE Alu -27 285 1 439 238 107 50 chr12 50481121 50481345 -93305110 - L1MC5 LINE L1 -195 7766 7519 2042 128 0 3 chr12 50481345 50481658 -93304797 - AluSx SINE Alu 0 312 1 439 238 107 50 chr12 50481658 50481731 -93304724 - L1MC5 LINE L1 -442 7519 7452 265 151 0 38 chr12 50481744 50481786 -93304669 + MSTA LTR MaLR 1 42 -386 2013 62 0 4 chr12 50481786 50482043 -93304412 + L1PA12 LINE L1 5912 6167 -1 1946 125 7 14 chr12 50482053 50482340 -93304115 + AluSx SINE Alu 1 285 -27 24 41 0 20 chr12 50482340 50482354 -93304101 + AT_rich Low_complexity Low_complexity 1 14 -34 2189 98 3 3 chr12 50482354 50482659 -93303796 + AluSp SINE Alu 1 305 -8 24 41 0 20 chr12 50482659 50482693 -93303762 + AT_rich Low_complexity Low_complexity 14 48 0 2244 110 0 0 chr12 50482709 50483019 -93303436 + AluSg SINE Alu 1 310 0 2156 150 80 8 chr12 50483020 50483393 -93303062 + MSTA LTR MaLR 29 428 0 331 264 58 8 chr12 50483398 50483519 -93302936 - L1MC5 LINE L1 -524 7437 7311 1278 225 66 81 chr12 50483676 50484192 -93302263 - L1MC5 LINE L1 -725 7236 6729 1029 139 50 5 chr12 50484252 50484453 -93302002 - L1MC3 LINE L1 0 7785 7576 2050 117 6 25 chr12 50484458 50484774 -93301681 - AluSx SINE Alu -2 310 1 1904 110 18 0 chr12 50484803 50485085 -93301370 - AluSg SINE Alu -8 302 16 478 135 10 21 chr12 50485085 50485141 -93301314 + CT-rich Low_complexity Low_complexity 2 58 -38 2117 88 6 47 chr12 50485141 50485458 -93300997 - AluSc SINE Alu -5 304 1 478 135 10 21 chr12 50485458 50485497 -93300958 + CT-rich Low_complexity Low_complexity 58 96 0 970 235 23 0 chr12 50485777 50485994 -93300461 + MIR SINE MIR 41 262 0 801 163 8 0 chr12 50486496 50486647 -93299808 - AluJb SINE Alu 0 305 154 2047 114 0 29 chr12 50486692 50487008 -93299447 - AluSx SINE Alu -5 307 1 880 197 50 50 chr12 50487010 50487208 -93299247 + MER63A DNA MER1_type 11 208 -2 1854 146 3 3 chr12 50487982 50488269 -93298186 + AluSx SINE Alu 1 287 -25 2091 100 0 0 chr12 50488409 50488722 -93297733 - AluSx SINE Alu 0 315 3 910 113 0 0 chr12 50488747 50488871 -93297584 - AluJb SINE Alu -188 124 1 1461 186 99 36 chr12 50488871 50489138 -93297317 + L1MC4 LINE L1 7352 7650 -392 2172 97 0 0 chr12 50489138 50489436 -93297019 + AluSc SINE Alu 1 298 -11 1461 186 99 36 chr12 50489436 50489533 -93296922 + L1MC4 LINE L1 7650 7739 -303 2335 194 32 50 chr12 50489533 50490089 -93296366 - MLT2B3 LTR ERVL -8 546 1 2001 113 0 3 chr12 50490127 50490443 -93296012 + AluSx SINE Alu 1 315 0 286 197 127 0 chr12 50490444 50490515 -93295940 + L1MC4 LINE L1 7832 7911 -131 1947 110 50 0 chr12 50490690 50490972 -93295483 + AluSp SINE Alu 1 296 -17 2489 65 0 0 chr12 50490974 50491284 -93295171 + AluY SINE Alu 1 310 -1 453 219 16 57 chr12 50491285 50491408 -93295047 + L1ME3A LINE L1 4146 4263 -1883 1641 134 58 0 chr12 50491476 50491737 -93294718 + AluSx SINE Alu 1 276 -36 2068 95 7 3 chr12 50491756 50492085 -93294370 + AluSx SINE Alu 1 330 0 1766 125 3 62 chr12 50492095 50492240 -93294215 + AluSx SINE Alu 1 153 -159 2101 107 7 0 chr12 50492240 50492540 -93293915 + AluSx SINE Alu 1 302 -10 2242 100 0 0 chr12 50492542 50492851 -93293604 + AluSc SINE Alu 1 309 0 1766 125 3 62 chr12 50492851 50493007 -93293448 + AluSx SINE Alu 154 287 -25 189 0 0 0 chr12 50493015 50493036 -93293419 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 550 267 68 80 chr12 50493063 50493194 -93293261 + L1ME3A LINE L1 5258 5389 -781 2109 117 0 0 chr12 50493194 50493494 -93292961 + AluSx SINE Alu 1 300 -12 550 267 68 80 chr12 50493494 50493695 -93292760 + L1ME3A LINE L1 5389 5591 -579 592 188 70 39 chr12 50493695 50493823 -93292632 - FLAM_A SINE Alu 0 133 2 550 267 68 80 chr12 50493823 50494118 -93292337 + L1ME3A LINE L1 5591 5885 -285 820 139 0 0 chr12 50494130 50494252 -93292203 + FLAM_C SINE Alu 6 127 -16 24 0 0 29 chr12 50494255 50494272 -93292183 + AT_rich Low_complexity Low_complexity 1 17 -17 1818 138 14 14 chr12 50494272 50494561 -93291894 - AluSx SINE Alu -23 289 1 24 0 0 29 chr12 50494561 50494578 -93291877 + AT_rich Low_complexity Low_complexity 17 34 0 332 254 35 107 chr12 50495097 50495294 -93291161 - L2 LINE L2 -568 2746 2564 2224 107 3 0 chr12 50495310 50495620 -93290835 + AluSx SINE Alu 1 311 -1 348 161 0 0 chr12 50495622 50495684 -93290771 + GA-rich Low_complexity Low_complexity 1 62 0 271 100 0 20 chr12 50495825 50495875 -93290580 + Alu SINE Alu 252 300 -1 523 209 0 0 chr12 50495878 50495969 -93290486 - L1MC4a LINE L1 -1105 6703 6613 5056 186 21 46 chr12 50495973 50496051 -93290404 - L1 LINE L1 -2444 3702 3624 7854 28 5 0 chr12 50496051 50497735 -93288720 + L1PA4 LINE L1 4468 6155 0 5056 186 21 46 chr12 50497735 50497805 -93288650 - L1 LINE L1 -2522 3624 3554 608 195 57 16 chr12 50497805 50497928 -93288527 - FLAM_A SINE Alu -5 128 1 1745 162 44 3 chr12 50497931 50498107 -93288348 - AluSx SINE Alu -3 309 115 252 0 0 0 chr12 50498107 50498135 -93288320 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1745 162 44 3 chr12 50498135 50498255 -93288200 - AluSx SINE Alu -197 115 1 5056 186 21 46 chr12 50498255 50498897 -93287558 - L1 LINE L1 -2594 3552 2952 1745 146 0 11 chr12 50498897 50499177 -93287278 - AluSx SINE Alu -1 311 35 5056 186 21 46 chr12 50499177 50499717 -93286738 - L1 LINE L1 -3194 2952 2400 869 193 27 5 chr12 50499725 50499957 -93286498 + L1M2 LINE L1 4454 4710 -1436 * 2174 138 12 48 chr12 50499939 50500296 -93286159 + L1M2 LINE L1 5047 5371 -941 1558 175 3 21 chr12 50500296 50500615 -93285840 - AluSg SINE Alu 0 314 1 2174 138 12 48 chr12 50500615 50500909 -93285546 + L1M2 LINE L1 5371 5674 -638 2151 111 0 3 chr12 50500910 50501207 -93285248 + AluSx SINE Alu 1 296 -16 2001 183 63 50 chr12 50501208 50501744 -93284711 + MLT1-int LTR MaLR 118 660 -711 1588 158 7 7 chr12 50501906 50502184 -93284271 - AluSx SINE Alu -21 291 14 2194 89 6 6 chr12 50502203 50502516 -93283939 - AluSp SINE Alu 0 313 1 591 215 28 177 chr12 50502529 50502665 -93283790 + MIR SINE MIR 18 173 -89 2247 94 10 0 chr12 50502665 50502972 -93283483 - AluSg SINE Alu 0 310 1 591 215 28 177 chr12 50502972 50503018 -93283437 + MIR SINE MIR 173 145 -117 1865 157 3 3 chr12 50503018 50503324 -93283131 + AluJb SINE Alu 1 306 -6 591 215 28 177 chr12 50503324 50503428 -93283027 + MIR SINE MIR 144 262 0 2353 90 0 0 chr12 50503591 50503901 -93282554 - AluY SINE Alu -1 310 1 21 36 0 0 chr12 50503901 50503929 -93282526 + AT_rich Low_complexity Low_complexity 1 28 0 1493 157 0 28 chr12 50504076 50504331 -93282124 + AluJo SINE Alu 49 296 -16 1830 154 23 3 chr12 50504775 50505074 -93281381 + AluSx SINE Alu 1 305 -7 345 289 36 30 chr12 50505378 50505544 -93280911 + MIR3 SINE MIR 37 203 -5 2310 78 3 25 chr12 50505795 50506114 -93280341 - AluSq SINE Alu -1 312 1 1858 145 0 25 chr12 50506984 50507124 -93279331 + AluJo SINE Alu 1 143 -169 2205 80 7 10 chr12 50507124 50507425 -93279030 + AluSg1 SINE Alu 1 300 -9 1858 145 0 25 chr12 50507425 50507601 -93278854 + AluJo SINE Alu 143 309 -3 862 182 6 25 chr12 50508141 50508300 -93278155 + AluJb SINE Alu 126 281 -31 392 279 23 39 chr12 50508302 50508431 -93278024 - L1MC4 LINE L1 -1339 6703 6577 938 115 30 140 chr12 50508634 50508834 -93277621 - MLT1C LTR MaLR 0 467 213 1964 126 0 7 chr12 50508993 50509278 -93277177 - AluSq SINE Alu -17 296 14 2191 89 3 6 chr12 50509297 50509611 -93276844 - AluSp SINE Alu 0 313 1 584 167 42 0 chr12 50509672 50509768 -93276687 - FLAM_C SINE Alu -15 128 29 1040 138 85 5 chr12 50509783 50509971 -93276484 + AluJo SINE Alu 85 287 -25 1686 119 22 57 chr12 50510500 50510818 -93275637 - AluJo SINE Alu -3 309 3 660 207 0 0 chr12 50512228 50512344 -93274111 + FLAM_A SINE Alu 1 116 -17 212 0 36 0 chr12 50512349 50512377 -93274078 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 183 291 165 38 chr12 50512442 50512600 -93273855 + L2 LINE L2 3122 3299 -14 753 116 34 129 chr12 50512602 50512721 -93273734 + AluJo/FLAM SINE Alu 1 105 -197 1963 131 9 34 chr12 50512721 50512903 -93273552 - AluSx SINE Alu 0 312 140 2180 104 3 25 chr12 50512903 50513221 -93273234 - AluSx SINE Alu -1 311 1 1963 131 9 34 chr12 50513221 50513358 -93273097 - AluSx SINE Alu -172 140 1 753 116 34 129 chr12 50513358 50513385 -93273070 + AluJo/FLAM SINE Alu 105 133 -169 580 289 89 25 chr12 50514420 50514655 -93271800 + MIR SINE MIR 12 261 -1 1264 252 70 49 chr12 50515613 50515790 -93270665 - L2 LINE L2 0 3313 3141 207 0 0 0 chr12 50515790 50515813 -93270642 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1264 252 70 49 chr12 50515813 50516215 -93270240 - L2 LINE L2 -172 3141 2712 2296 90 7 0 chr12 50516215 50516525 -93269930 - AluSp SINE Alu -1 312 1 1264 252 70 49 chr12 50516525 50516585 -93269870 - L2 LINE L2 -601 2712 2655 2376 72 0 0 chr12 50516585 50516889 -93269566 + AluY SINE Alu 1 304 -7 920 146 0 0 chr12 50517550 50517687 -93268768 + AluJo SINE Alu 1 137 -175 613 228 62 27 chr12 50521339 50521544 -93264911 + MIR SINE MIR 8 221 -41 2154 91 24 3 chr12 50521545 50521843 -93264612 - AluSq SINE Alu -9 304 1 2236 88 10 0 chr12 50521917 50522222 -93264233 + AluSp SINE Alu 1 308 -5 254 356 20 10 chr12 50523707 50523808 -93262647 + MIR SINE MIR 45 146 -62 408 20 0 0 chr12 50525722 50525771 -93260684 + (TG)n Simple_repeat Simple_repeat 1 49 0 270 0 0 0 chr12 50525771 50525801 -93260654 + (GA)n Simple_repeat Simple_repeat 1 30 0 192 182 0 0 chr12 50525947 50525991 -93260464 + GA-rich Low_complexity Low_complexity 2 45 0 185 147 29 0 chr12 50528483 50528517 -93257938 + MIR SINE MIR 115 149 -113 499 309 109 5 chr12 50528766 50528967 -93257488 - MIR SINE MIR -6 256 35 222 311 0 0 chr12 50530072 50530133 -93256322 + CT-rich Low_complexity Low_complexity 1 61 0 333 0 0 0 chr12 50531745 50531782 -93254673 + (T)n Simple_repeat Simple_repeat 1 37 0 1653 126 48 38 chr12 50532383 50532676 -93253779 - AluSx SINE Alu -14 298 3 24 0 0 0 chr12 50533072 50533096 -93253359 + GC_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr12 50534621 50534656 -93251799 + GC_rich Low_complexity Low_complexity 1 35 0 215 256 141 0 chr12 50535066 50535144 -93251311 - MIR SINE MIR -72 136 48 1548 204 4 84 chr12 50537943 50538070 -93248385 - L1ME3 LINE L1 -98 6064 5928 2325 94 0 0 chr12 50538070 50538377 -93248078 - AluSx SINE Alu -5 307 1 1548 204 4 84 chr12 50538377 50538492 -93247963 - L1ME3 LINE L1 -234 5928 5805 2397 82 3 0 chr12 50538492 50538798 -93247657 - AluSp SINE Alu -6 307 1 1548 204 4 84 chr12 50538798 50539004 -93247451 - L1ME3 LINE L1 -357 5805 5651 1342 84 0 0 chr12 50539822 50540001 -93246454 - AluSg/x SINE Alu 0 312 134 2224 88 0 3 chr12 50540001 50540297 -93246158 - AluY SINE Alu -12 299 5 2118 104 3 0 chr12 50540435 50540722 -93245733 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr12 50540722 50540744 -93245711 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 493 247 63 32 chr12 50540878 50541017 -93245438 - MIR SINE MIR 0 262 116 2283 87 7 3 chr12 50541017 50541327 -93245128 + AluY SINE Alu 1 311 0 493 247 63 32 chr12 50541327 50541345 -93245110 - MIR SINE MIR -146 116 100 223 260 39 58 chr12 50541347 50541451 -93245004 - MIR SINE MIR -133 129 28 505 218 111 56 chr12 50541608 50541842 -93244613 - MIR SINE MIR 0 262 16 212 98 0 24 chr12 50542960 50543001 -93243454 + (TG)n Simple_repeat Simple_repeat 1 40 0 236 109 0 22 chr12 50546589 50546635 -93239820 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 239 327 106 31 chr12 50547747 50548068 -93238387 + L2 LINE L2 2152 2496 -818 2207 101 6 41 chr12 50548108 50548242 -93238213 + AluSc SINE Alu 1 138 -171 2411 81 3 0 chr12 50548242 50548576 -93237879 + AluSq SINE Alu 1 335 0 2469 67 3 13 chr12 50548582 50548882 -93237573 + AluY SINE Alu 1 297 -14 2207 101 6 41 chr12 50548882 50549056 -93237399 + AluSc SINE Alu 143 307 -2 984 139 50 5 chr12 50549061 50549262 -93237193 + L1MC3 LINE L1 7576 7785 0 1182 225 66 81 chr12 50549322 50549838 -93236617 + L1MC5 LINE L1 6729 7236 -725 309 264 58 8 chr12 50549995 50550116 -93236339 + L1MC5 LINE L1 7311 7437 -524 2034 150 80 8 chr12 50550121 50550494 -93235961 - MSTA LTR MaLR 0 428 29 2398 110 0 0 chr12 50550495 50550805 -93235650 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 50550821 50550842 -93235613 + AT_rich Low_complexity Low_complexity 1 21 0 2344 103 3 3 chr12 50550849 50551160 -93235295 - AluSp SINE Alu -2 311 1 1282 143 10 20 chr12 50551162 50551358 -93235097 - AluSg/x SINE Alu -15 295 102 415 103 90 51 chr12 50551459 50551537 -93234918 + AluSg/x SINE Alu 219 299 -13 337 333 70 33 chr12 50551537 50551714 -93234741 + L1M4 LINE L1 754 944 -5598 2157 135 13 0 chr12 50551714 50552018 -93234437 + AluSx SINE Alu 1 308 -4 337 333 70 33 chr12 50552018 50552083 -93234372 + L1M4 LINE L1 944 1005 -5537 1479 114 0 0 chr12 50552128 50552312 -93234143 + AluSx SINE Alu 2 185 -127 225 125 0 0 chr12 50552312 50552344 -93234111 + U2 snRNA snRNA 2 33 -155 972 120 0 0 chr12 50552344 50552477 -93233978 + AluSx SINE Alu 169 301 -9 2346 113 0 7 chr12 50552518 50552828 -93233627 + AluSg SINE Alu 1 308 -2 2338 92 3 3 chr12 50552847 50553151 -93233304 + AluSc SINE Alu 1 304 -5 1997 113 35 0 chr12 50553151 50553433 -93233022 + AluSq SINE Alu 12 303 -10 2666 36 0 16 chr12 50553434 50553742 -93232713 + AluY SINE Alu 1 303 -8 1362 209 70 36 chr12 50553743 50553998 -93232457 + L1M4 LINE L1 3310 3555 -3089 2248 78 3 0 chr12 50553998 50554304 -93232151 + AluSp SINE Alu 1 307 0 1362 209 70 36 chr12 50554304 50554430 -93232025 + L1M4 LINE L1 3555 3675 -2969 1643 164 11 25 chr12 50554430 50554737 -93231718 + AluJb SINE Alu 1 303 0 1362 209 70 36 chr12 50554737 50554767 -93231688 + L1M4 LINE L1 3675 3703 -2941 2312 106 0 7 chr12 50554767 50555070 -93231385 + AluSx SINE Alu 1 301 -11 1362 209 70 36 chr12 50555070 50555095 -93231360 + L1M4 LINE L1 3703 3726 -2918 2610 66 0 0 chr12 50555095 50555399 -93231056 + AluY SINE Alu 1 304 -7 1362 209 70 36 chr12 50555399 50555482 -93230973 + L1M4 LINE L1 3726 3853 -2791 801 168 15 0 chr12 50555483 50555614 -93230841 + AluJb SINE Alu 1 133 -179 2114 224 56 37 chr12 50555615 50555777 -93230678 + L1M4 LINE L1 3843 4000 -2644 1807 169 3 7 chr12 50555777 50556078 -93230377 + AluSx SINE Alu 1 300 -12 2114 224 56 37 chr12 50556078 50556346 -93230109 + L1M4 LINE L1 4000 4261 -2383 1971 144 10 3 chr12 50556346 50556644 -93229811 + AluSx SINE Alu 1 300 -12 2114 224 56 37 chr12 50556644 50556886 -93229569 + L1M4 LINE L1 4261 4529 -2115 662 238 0 0 chr12 50556891 50557034 -93229421 + L1MB8 LINE L1 5747 5889 -289 671 185 71 46 chr12 50557037 50557275 -93229180 + LTR37B LTR ERV1 225 468 0 555 243 14 14 chr12 50557276 50557416 -93229039 - L2 LINE L2 -1854 1460 1321 380 41 0 0 chr12 50557433 50557482 -93228973 + AluSq/x SINE Alu 87 135 -168 2534 82 0 0 chr12 50557482 50557810 -93228645 + AluY SINE Alu 1 311 0 321 281 137 38 chr12 50557815 50558078 -93228377 + L2 LINE L2 1796 2084 -1230 2419 94 0 3 chr12 50558135 50558443 -93228012 - AluSq SINE Alu -6 307 1 614 249 28 48 chr12 50558928 50559128 -93227327 + MLT1L LTR MaLR 362 558 -57 1766 184 34 0 chr12 50559128 50559421 -93227034 - AluJb SINE Alu -9 303 1 614 249 28 48 chr12 50559421 50559469 -93226986 + MLT1L LTR MaLR 558 605 -10 2303 78 3 0 chr12 50559469 50559777 -93226678 + AluY SINE Alu 1 309 0 588 303 137 47 chr12 50559818 50559956 -93226499 + L2 LINE L2 2266 2390 -924 682 231 15 0 chr12 50559956 50560086 -93226369 - FLAM_A SINE Alu -1 132 1 588 303 137 47 chr12 50560086 50560413 -93226042 + L2 LINE L2 2390 2773 -541 1905 142 20 23 chr12 50560418 50560721 -93225734 + AluJo SINE Alu 1 302 -10 2393 91 13 3 chr12 50560722 50561029 -93225426 + AluSp SINE Alu 3 312 -1 258 350 16 0 chr12 50561140 50561263 -93225192 + MIR3 SINE MIR 71 195 -13 2308 106 7 0 chr12 50561516 50561817 -93224638 + AluSx SINE Alu 1 303 -9 592 230 121 12 chr12 50563046 50563211 -93223244 - MIR SINE MIR -54 208 26 2206 106 3 0 chr12 50563419 50563701 -93222754 - AluSx SINE Alu -29 283 1 207 0 0 0 chr12 50563903 50563926 -93222529 + (TG)n Simple_repeat Simple_repeat 1 23 0 2020 126 17 27 chr12 50564001 50564302 -93222153 - AluSg SINE Alu 0 310 13 379 270 127 48 chr12 50565047 50565236 -93221219 + MIR SINE MIR 34 237 -25 1751 157 10 27 chr12 50565387 50565686 -93220769 - AluJo SINE Alu -6 306 13 189 262 93 93 chr12 50565703 50565810 -93220645 - L2 LINE L2 -15 3298 3192 410 94 16 0 chr12 50565905 50565969 -93220486 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 709 159 0 0 chr12 50565969 50566076 -93220379 - FLAM_C SINE Alu -35 108 2 23 33 0 0 chr12 50568889 50568919 -93217536 + GC_rich Low_complexity Low_complexity 1 30 0 997 81 0 15 chr12 50569052 50569188 -93217267 - AluSp/q SINE Alu -19 294 161 189 277 0 0 chr12 50569293 50569358 -93217097 + MIR SINE MIR 137 201 -61 294 53 0 0 chr12 50569382 50569420 -93217035 - LTR9 LTR ERV1 0 612 575 368 75 0 0 chr12 50569420 50569473 -93216982 - LTR9 LTR ERV1 -559 53 1 1874 133 0 7 chr12 50569518 50569788 -93216667 + AluJb SINE Alu 1 268 -44 22 0 0 0 chr12 50570252 50570274 -93216181 + AT_rich Low_complexity Low_complexity 1 22 0 2365 91 16 0 chr12 50570277 50570585 -93215870 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 50570590 50570613 -93215842 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 50572158 50572193 -93214262 + AT_rich Low_complexity Low_complexity 1 35 0 283 264 110 0 chr12 50572410 50572501 -93213954 + MER5A DNA MER1_type 89 189 0 2179 119 0 3 chr12 50572659 50572953 -93213502 + AluSx SINE Alu 1 293 -19 202 192 178 0 chr12 50573046 50573119 -93213336 + MIR SINE MIR 177 262 0 297 0 0 0 chr12 50573130 50573163 -93213292 + (TA)n Simple_repeat Simple_repeat 2 34 0 2223 136 0 0 chr12 50573163 50573471 -93212984 - AluSx SINE Alu -4 308 1 1734 133 6 79 chr12 50574318 50574634 -93211821 + AluJb SINE Alu 1 293 -19 277 324 128 0 chr12 50575532 50575711 -93210744 + L2 LINE L2 1901 2102 -1212 2168 125 3 3 chr12 50575741 50576052 -93210403 - AluSx SINE Alu -1 311 1 1777 172 7 7 chr12 50576054 50576350 -93210105 - AluJo SINE Alu -16 296 1 2352 102 3 0 chr12 50576366 50576660 -93209795 - AluSx SINE Alu -17 295 1 230 310 152 79 chr12 50577036 50577138 -93209317 + L2 LINE L2 2367 2460 -854 1525 177 89 3 chr12 50577138 50577420 -93209035 + AluJo SINE Alu 1 306 -6 230 310 152 79 chr12 50577420 50577633 -93208822 + L2 LINE L2 2460 2705 -609 1842 174 0 19 chr12 50577661 50577972 -93208483 - AluJo SINE Alu -7 305 1 1863 130 48 0 chr12 50578005 50578275 -93208180 + AluSp SINE Alu 1 283 -30 234 62 0 0 chr12 50578275 50578307 -93208148 + (TC)n Simple_repeat Simple_repeat 1 32 0 192 77 0 0 chr12 50578307 50578333 -93208122 + (TA)n Simple_repeat Simple_repeat 1 26 0 2064 107 4 4 chr12 50578613 50578916 -93207539 + AluSx SINE Alu 14 316 0 2287 113 3 0 chr12 50579008 50579310 -93207145 + AluSq SINE Alu 1 303 -10 850 154 0 0 chr12 50579324 50579454 -93207001 + FLAM_A SINE Alu 2 131 -2 956 286 89 39 chr12 50579466 50579800 -93206655 - L2 LINE L2 -1071 2243 1879 1843 141 52 0 chr12 50579800 50580099 -93206356 + AluSx SINE Alu 1 313 0 956 286 89 39 chr12 50580099 50580203 -93206252 - L2 LINE L2 -1435 1879 1782 195 300 146 27 chr12 50580335 50580445 -93206010 + L2 LINE L2 3147 3269 -3 1915 140 3 14 chr12 50580467 50580753 -93205702 - AluSx SINE Alu -23 289 7 719 200 8 0 chr12 50580756 50580886 -93205569 - AluSq/x SINE Alu -174 139 9 2279 123 3 0 chr12 50580942 50581325 -93205130 + AluSx SINE Alu 1 384 0 181 279 15 59 chr12 50581340 50581408 -93205047 - L2 LINE L2 -1 3271 3207 21 0 0 0 chr12 50582006 50582027 -93204428 + AT_rich Low_complexity Low_complexity 1 21 0 336 24 0 0 chr12 50584883 50584924 -93201531 + (TG)n Simple_repeat Simple_repeat 1 41 0 225 83 0 0 chr12 50584949 50584985 -93201470 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr12 50585069 50585095 -93201360 + GC_rich Low_complexity Low_complexity 1 26 0 241 125 0 54 chr12 50586469 50586525 -93199930 + (CCCCCT)n Simple_repeat Simple_repeat 2 54 0 2294 117 0 0 chr12 50588402 50588709 -93197746 - AluSx SINE Alu -5 307 1 288 159 0 0 chr12 50589283 50589327 -93197128 - MSTA LTR MaLR -2 426 383 1923 126 70 0 chr12 50589327 50589598 -93196857 + AluSc SINE Alu 1 290 -19 2212 128 0 3 chr12 50589610 50589923 -93196532 + AluSx SINE Alu 1 312 0 2887 10 0 0 chr12 50590057 50590364 -93196091 + AluYa5 SINE Alu 1 307 -4 2095 104 48 0 chr12 50590528 50590817 -93195638 + AluSc SINE Alu 1 303 -6 339 287 167 14 chr12 50591723 50591885 -93194570 + MIR SINE MIR 2 185 -77 1832 149 0 4 chr12 50593318 50593586 -93192869 - AluJb SINE Alu -45 267 1 601 198 0 18 chr12 50593603 50593714 -93192741 - FLAM_C SINE Alu -28 115 7 219 226 38 151 chr12 50594457 50594514 -93191941 + MER5A DNA MER1_type 16 57 -132 1442 146 49 94 chr12 50594514 50594822 -93191633 + AluJo SINE Alu 1 294 -18 219 226 38 151 chr12 50594822 50594870 -93191585 + MER5A DNA MER1_type 57 109 -80 1072 154 145 26 chr12 50594873 50595107 -93191348 - AluJb SINE Alu -17 295 34 208 250 103 0 chr12 50595118 50595186 -93191269 + MER5A DNA MER1_type 115 189 0 1634 147 30 19 chr12 50595275 50595541 -93190914 + AluJo SINE Alu 9 277 -35 768 160 77 39 chr12 50596821 50596977 -93189478 + FRAM SINE Alu 1 162 -4 300 266 351 0 chr12 50597307 50597461 -93188994 + MIR SINE MIR 33 240 -22 2443 63 13 3 chr12 50597945 50598248 -93188207 - AluY SINE Alu -5 306 1 2061 141 10 10 chr12 50599586 50599884 -93186571 + AluSx SINE Alu 1 298 -14 966 92 17 0 chr12 50600418 50600537 -93185918 + AluSq/x SINE Alu 13 133 -179 1867 106 26 29 chr12 50600554 50600827 -93185628 + AluSx SINE Alu 5 276 -36 213 65 0 0 chr12 50600827 50600858 -93185597 + (TG)n Simple_repeat Simple_repeat 2 32 0 2005 97 71 0 chr12 50601311 50601578 -93184877 - AluSx SINE Alu -25 287 2 1824 128 51 0 chr12 50602116 50602389 -93184066 - AluJb SINE Alu -25 287 1 2367 46 3 30 chr12 50602512 50602816 -93183639 - AluY SINE Alu -15 296 1 506 79 6 121 chr12 50602828 50602993 -93183462 - AluSg/x SINE Alu -23 289 144 24 32 0 0 chr12 50603005 50603036 -93183419 + AT_rich Low_complexity Low_complexity 1 31 0 1734 133 6 79 chr12 50604323 50604639 -93181816 + AluJb SINE Alu 1 293 -19 277 324 128 0 chr12 50605537 50605716 -93180739 + L2 LINE L2 1901 2102 -1212 2168 125 3 3 chr12 50605746 50606057 -93180398 - AluSx SINE Alu -1 311 1 1903 141 3 13 chr12 50606059 50606358 -93180097 - AluJo SINE Alu -16 296 1 2475 77 0 7 chr12 50606373 50606672 -93179783 - AluSp SINE Alu -16 297 1 1725 143 160 6 chr12 50606692 50606848 -93179607 + Tigger3(Golem) DNA MER2_type 2634 2765 -264 2066 122 35 0 chr12 50606848 50607136 -93179319 - AluSx SINE Alu -14 298 1 1725 143 160 6 chr12 50607136 50607322 -93179133 + Tigger3(Golem) DNA MER2_type 2765 3029 0 1555 183 10 27 chr12 50608347 50608647 -93177808 - AluJb SINE Alu -17 295 1 830 154 0 91 chr12 50608681 50608856 -93177599 + FRAM SINE Alu 1 159 -7 402 276 32 8 chr12 50609621 50609744 -93176711 - MIR3 SINE MIR 0 208 83 1733 182 20 3 chr12 50609746 50610042 -93176413 + AluJo SINE Alu 1 301 -11 2367 68 13 16 chr12 50610044 50610355 -93176100 + AluY SINE Alu 1 310 -1 2183 103 7 13 chr12 50610436 50610798 -93175657 - AluSc SINE Alu 0 309 1 1959 147 7 7 chr12 50610800 50611099 -93175356 - AluSx SINE Alu -13 299 1 238 327 65 0 chr12 50611218 50611305 -93175150 - MIR SINE MIR -59 149 67 811 152 0 14 chr12 50611617 50611755 -93174700 - MIR SINE MIR -59 203 68 217 259 94 0 chr12 50612420 50612505 -93173950 + MER5A DNA MER1_type 10 102 -87 394 206 155 162 chr12 50612594 50613007 -93173448 - L1MC4 LINE L1 -1 8041 7632 588 316 50 18 chr12 50613021 50613239 -93173216 - L2 LINE L2 -383 2931 2707 2175 96 0 7 chr12 50613242 50613548 -93172907 - AluSc SINE Alu 0 304 1 251 179 45 30 chr12 50613578 50613645 -93172810 + L1MC4 LINE L1 7508 7575 -467 1068 90 0 0 chr12 50613646 50613779 -93172676 + AluSp SINE Alu 1 133 -180 261 0 0 0 chr12 50613797 50613826 -93172629 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1336 212 89 39 chr12 50613848 50614286 -93172169 - MLT1C LTR MaLR -7 460 1 525 295 217 0 chr12 50614307 50614588 -93171867 + L1MC4 LINE L1 7615 7956 -86 208 67 0 44 chr12 50614645 50614690 -93171765 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 440 152 0 0 chr12 50614693 50614759 -93171696 - FLAM_A SINE Alu -25 117 52 484 165 0 0 chr12 50615021 50615100 -93171355 + AluJ/FRAM SINE Alu 225 303 -9 318 157 0 0 chr12 50615192 50615243 -93171212 - MER66A LTR ERV1 -141 337 287 22 0 0 0 chr12 50615254 50615276 -93171179 + AT_rich Low_complexity Low_complexity 1 22 0 6367 28 0 1 chr12 50616095 50616779 -93169676 + SVA Other Other 703 1385 -1 1865 189 3 0 chr12 50616790 50617097 -93169358 + AluJo SINE Alu 1 308 -4 429 292 7 32 chr12 50617161 50617315 -93169140 + G-rich Low_complexity Low_complexity 3 152 0 2320 105 3 3 chr12 50617670 50617975 -93168480 + AluSp SINE Alu 1 305 -8 1724 191 7 0 chr12 50618011 50618305 -93168150 - AluJb SINE Alu -14 298 3 24 0 0 0 chr12 50618541 50618565 -93167890 + AT_rich Low_complexity Low_complexity 1 24 0 736 171 0 0 chr12 50618578 50618689 -93167766 + AluJb SINE Alu 2 112 -200 2143 104 66 0 chr12 50618689 50618976 -93167479 - AluSx SINE Alu -6 306 1 392 130 14 0 chr12 50618998 50619067 -93167388 + GA-rich Low_complexity Low_complexity 3 72 0 1691 146 33 46 chr12 50619082 50619384 -93167071 - AluJo SINE Alu -13 299 2 1359 254 44 78 chr12 50619431 50620061 -93166394 - MLT1L LTR MaLR -2 613 5 712 165 50 0 chr12 50620252 50620373 -93166082 + FLAM_A SINE Alu 1 127 -6 249 33 0 0 chr12 50620398 50620428 -93166027 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2327 113 0 0 chr12 50620432 50620742 -93165713 + AluSg SINE Alu 1 310 0 2887 10 0 0 chr12 50620876 50621183 -93165272 + AluYa5 SINE Alu 1 307 -4 2095 104 48 0 chr12 50621347 50621636 -93164819 + AluSc SINE Alu 1 303 -6 339 287 167 14 chr12 50622542 50622704 -93163751 + MIR SINE MIR 2 185 -77 1832 149 0 4 chr12 50624137 50624405 -93162050 - AluJb SINE Alu -45 267 1 601 198 0 18 chr12 50624422 50624533 -93161922 - FLAM_C SINE Alu -28 115 7 219 226 38 151 chr12 50625276 50625333 -93161122 + MER5A DNA MER1_type 16 57 -132 1442 146 49 94 chr12 50625333 50625641 -93160814 + AluJo SINE Alu 1 294 -18 219 226 38 151 chr12 50625641 50625689 -93160766 + MER5A DNA MER1_type 57 109 -80 1072 154 145 26 chr12 50625692 50625926 -93160529 - AluJb SINE Alu -17 295 34 208 250 103 0 chr12 50625937 50626005 -93160450 + MER5A DNA MER1_type 115 189 0 1634 147 30 19 chr12 50626094 50626360 -93160095 + AluJo SINE Alu 9 277 -35 768 160 77 39 chr12 50627642 50627798 -93158657 + FRAM SINE Alu 1 162 -4 300 266 351 0 chr12 50628128 50628282 -93158173 + MIR SINE MIR 33 240 -22 2443 63 13 3 chr12 50628766 50629069 -93157386 - AluY SINE Alu -5 306 1 2061 141 10 10 chr12 50630407 50630705 -93155750 + AluSx SINE Alu 1 298 -14 966 92 17 0 chr12 50631239 50631358 -93155097 + AluSq/x SINE Alu 13 133 -180 1902 107 26 26 chr12 50631375 50631647 -93154808 + AluSx SINE Alu 5 276 -36 213 65 0 0 chr12 50631647 50631678 -93154777 + (TG)n Simple_repeat Simple_repeat 2 32 0 2005 97 71 0 chr12 50632131 50632398 -93154057 - AluSx SINE Alu -25 287 2 1824 128 51 0 chr12 50632936 50633209 -93153246 - AluJb SINE Alu -25 287 1 2472 47 3 20 chr12 50633332 50633633 -93152822 - AluY SINE Alu -15 296 1 1584 84 141 46 chr12 50633642 50633904 -93152551 - AluSg SINE Alu -23 287 1 246 219 0 0 chr12 50634894 50634958 -93151497 + GA-rich Low_complexity Low_complexity 3 66 0 341 216 98 78 chr12 50635471 50635515 -93150940 - MIR SINE MIR -3 259 217 2509 54 0 7 chr12 50635515 50635811 -93150644 - AluSc SINE Alu -15 294 1 341 216 98 78 chr12 50635811 50635919 -93150536 - MIR SINE MIR -45 217 104 607 121 0 0 chr12 50636123 50636206 -93150249 + AluS SINE Alu 2 84 -229 200 244 244 22 chr12 50636288 50636378 -93150077 - L2 LINE L2 -1 3312 3203 1077 139 16 37 chr12 50636420 50636434 -93150021 + AluSg/x SINE Alu 121 134 -178 1934 141 30 7 chr12 50636434 50636732 -93149723 + AluSq SINE Alu 1 305 -8 1077 139 16 37 chr12 50636732 50636904 -93149551 + AluSg/x SINE Alu 134 303 -9 980 265 181 12 chr12 50636908 50637316 -93149139 - L2 LINE L2 -2004 1310 834 1553 161 36 0 chr12 50637341 50637590 -93148865 - AluJo SINE Alu -20 292 35 195 300 146 27 chr12 50637983 50638093 -93148362 - L2 LINE L2 -3 3269 3147 956 286 89 39 chr12 50638225 50638329 -93148126 + L2 LINE L2 1782 1879 -1435 1842 141 52 0 chr12 50638329 50638628 -93147827 - AluSx SINE Alu 0 313 1 956 286 89 39 chr12 50638628 50638962 -93147493 + L2 LINE L2 1879 2243 -1071 850 154 0 0 chr12 50638974 50639104 -93147351 - FLAM_A SINE Alu -2 131 2 2287 113 3 0 chr12 50639118 50639420 -93147035 - AluSq SINE Alu -10 303 1 2063 107 4 4 chr12 50639512 50639815 -93146640 - AluSx SINE Alu 0 316 14 192 77 0 0 chr12 50640095 50640121 -93146334 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr12 50640121 50640153 -93146302 + (GA)n Simple_repeat Simple_repeat 1 32 0 1981 114 44 0 chr12 50640153 50640424 -93146031 - AluSp SINE Alu -30 283 1 1842 174 0 19 chr12 50640457 50640768 -93145687 + AluJo SINE Alu 1 305 -7 230 310 152 79 chr12 50640796 50641009 -93145446 - L2 LINE L2 -609 2705 2460 1525 177 89 3 chr12 50641009 50641291 -93145164 - AluJo SINE Alu -6 306 1 230 310 152 79 chr12 50641291 50641393 -93145062 - L2 LINE L2 -854 2460 2367 2258 112 3 3 chr12 50641769 50642064 -93144391 + AluSx SINE Alu 1 295 -17 2333 90 10 7 chr12 50642079 50642380 -93144075 + AluSq SINE Alu 1 302 -11 2269 74 10 13 chr12 50642772 50643070 -93143385 - AluSc SINE Alu -12 297 1 1683 160 3 54 chr12 50643077 50643390 -93143065 - AluJb SINE Alu -15 297 1 752 182 0 0 chr12 50643424 50643545 -93142910 - FRAM SINE Alu -12 164 44 2289 82 24 3 chr12 50643762 50644055 -93142400 + AluSp SINE Alu 1 299 -14 234 0 0 0 chr12 50644326 50644352 -93142103 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 633 241 41 41 chr12 50644913 50645108 -93141347 + L3 LINE CR1 900 1094 -483 446 175 34 51 chr12 50645108 50645261 -93141194 + L1MB7 LINE L1 5573 5723 -445 1791 164 23 49 chr12 50645306 50645372 -93141083 + L1MB7 LINE L1 5789 5855 -329 2343 100 13 10 chr12 50645372 50645681 -93140774 - AluSg SINE Alu 0 310 1 1791 164 23 49 chr12 50645681 50646004 -93140451 + L1MB7 LINE L1 5855 6168 -16 915 203 6 0 chr12 50646408 50646566 -93139889 + FRAM SINE Alu 1 159 -7 358 283 35 28 chr12 50646572 50646717 -93139738 - MIR3 SINE MIR -43 165 20 306 309 191 40 chr12 50646747 50647071 -93139384 + L3 LINE CR1 1202 1574 -3 498 204 9 0 chr12 50647240 50647348 -93139107 - AluJb SINE Alu 0 312 204 1287 101 0 6 chr12 50647360 50647538 -93138917 - AluSg/x SINE Alu 0 312 136 2343 118 0 3 chr12 50647540 50647853 -93138602 - AluSx SINE Alu 0 312 1 562 196 10 0 chr12 50647879 50647981 -93138474 + FLAM_C SINE Alu 13 115 -28 1696 158 0 0 chr12 50648187 50648447 -93138008 - AluJb SINE Alu 0 312 53 484 165 0 0 chr12 50648709 50648788 -93137667 + AluJ/FRAM SINE Alu 225 303 -9 318 157 0 0 chr12 50648880 50648931 -93137524 - MER66B LTR ERV1 -141 345 295 22 0 0 0 chr12 50648942 50648964 -93137491 + AT_rich Low_complexity Low_complexity 1 22 0 6367 28 0 1 chr12 50649783 50650467 -93135988 + SVA Other Other 703 1385 -1 1865 189 3 0 chr12 50650478 50650785 -93135670 + AluJo SINE Alu 1 308 -4 429 292 7 32 chr12 50650849 50651003 -93135452 + G-rich Low_complexity Low_complexity 3 152 0 2320 105 3 3 chr12 50651358 50651663 -93134792 + AluSp SINE Alu 1 305 -8 1724 191 7 0 chr12 50651699 50651993 -93134462 - AluJb SINE Alu -14 298 3 24 0 0 0 chr12 50652229 50652253 -93134202 + AT_rich Low_complexity Low_complexity 1 24 0 736 171 0 0 chr12 50652266 50652377 -93134078 + AluJb SINE Alu 2 112 -200 2143 104 66 0 chr12 50652377 50652664 -93133791 - AluSx SINE Alu -6 306 1 392 130 14 0 chr12 50652686 50652755 -93133700 + GA-rich Low_complexity Low_complexity 3 72 0 1691 146 33 46 chr12 50652770 50653072 -93133383 - AluJo SINE Alu -13 299 2 1359 254 44 78 chr12 50653119 50653749 -93132706 - MLT1L LTR MaLR -2 613 5 703 167 50 0 chr12 50653940 50654060 -93132395 + FLAM_A SINE Alu 1 126 -7 249 33 0 0 chr12 50654085 50654115 -93132340 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2566 63 3 0 chr12 50654119 50654420 -93132035 + AluSp SINE Alu 1 302 -11 2437 92 0 0 chr12 50654937 50655241 -93131214 + AluSg SINE Alu 1 304 -6 299 280 0 43 chr12 50655449 50655542 -93130913 - L2 LINE L2 -218 3054 2966 1893 166 3 7 chr12 50656089 50656390 -93130065 - AluJb SINE Alu -12 300 1 2371 112 0 3 chr12 50656674 50656986 -93129469 + AluSq SINE Alu 1 311 -2 306 134 0 0 chr12 50657112 50657179 -93129276 + (GA)n Simple_repeat Simple_repeat 2 68 0 1842 179 3 10 chr12 50657501 50657814 -93128641 + AluJo SINE Alu 1 311 -1 619 309 85 38 chr12 50657940 50658338 -93128117 - MLT1K LTR MaLR -159 429 13 1318 185 0 0 chr12 50658434 50658661 -93127794 + AluJo SINE Alu 82 308 -4 503 317 27 33 chr12 50658710 50658893 -93127562 - L2 LINE L2 -81 3191 3010 1684 194 20 7 chr12 50658940 50659239 -93127216 - AluJb SINE Alu -9 303 1 874 147 0 22 chr12 50659246 50659444 -93127011 - FLAM_C SINE Alu 0 195 1 244 303 141 17 chr12 50659452 50659686 -93126769 + L2 LINE L2 2694 2956 -358 2214 86 28 17 chr12 50659740 50660031 -93126424 - AluSg SINE Alu -15 295 2 188 273 45 68 chr12 50660165 50660253 -93126202 + L2 LINE L2 3227 3312 -1 2346 100 3 0 chr12 50660544 50660845 -93125610 + AluSp SINE Alu 1 302 -11 1215 129 0 17 chr12 50660845 50661023 -93125432 + AluSg/x SINE Alu 132 306 -3 1298 236 65 53 chr12 50661027 50661460 -93124995 - MER21B LTR ERV1 -411 452 15 868 140 0 22 chr12 50661463 50661599 -93124856 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr12 50661924 50661946 -93124509 + (TA)n Simple_repeat Simple_repeat 2 23 0 632 213 9 0 chr12 50661956 50662064 -93124391 - FLAM_C SINE Alu -32 111 3 2239 101 0 23 chr12 50662074 50662380 -93124075 - AluSx SINE Alu -13 299 1 839 190 14 13 chr12 50662423 50662648 -93123807 + AluJb SINE Alu 5 312 0 1898 117 0 0 chr12 50663409 50663657 -93122798 + AluSq SINE Alu 1 248 -65 1622 84 0 5 chr12 50663828 50664031 -93122424 + AluSq SINE Alu 106 307 -6 25 51 0 0 chr12 50664206 50664245 -93122210 + AT_rich Low_complexity Low_complexity 1 39 0 2001 125 0 30 chr12 50664336 50664681 -93121774 + AluSx SINE Alu 1 336 0 333 312 174 35 chr12 50664691 50665002 -93121453 + L3 LINE CR1 1221 1574 -3 1823 167 14 3 chr12 50665473 50665766 -93120689 + AluJb SINE Alu 1 296 -16 397 40 162 0 chr12 50665766 50665840 -93120615 - Tigger3(Golem) DNA MER2_type -513 2516 2431 1801 170 10 3 chr12 50665842 50666130 -93120325 - AluJb SINE Alu -22 290 1 215 337 12 12 chr12 50666300 50666386 -93120069 + L2 LINE L2 1834 1919 -1395 364 263 64 51 chr12 50666386 50666542 -93119913 + MIR SINE MIR 26 183 -79 471 129 0 0 chr12 50666811 50666881 -93119574 + AluSp/q SINE Alu 230 299 -14 2033 159 0 0 chr12 50667270 50667578 -93118877 - AluSx SINE Alu -4 308 1 326 292 15 23 chr12 50667598 50667728 -93118727 + Charlie2 DNA MER1_type 73 201 -2581 617 167 0 0 chr12 50667744 50667846 -93118609 + AluJb SINE Alu 211 312 0 1170 153 37 0 chr12 50667989 50668179 -93118276 - AluSg/x SINE Alu -14 296 100 2137 88 7 14 chr12 50668319 50668657 -93117798 - AluSc SINE Alu 0 336 1 1750 173 7 10 chr12 50668659 50668959 -93117496 - AluJb SINE Alu -13 299 1 287 281 30 55 chr12 50669274 50669438 -93117017 + CT-rich Low_complexity Low_complexity 1 160 0 1923 222 86 32 chr12 50719508 50719853 -93066602 - L1ME3 LINE L1 0 6162 5837 2478 45 7 0 chr12 50719853 50720143 -93066312 - AluY SINE Alu -19 292 1 1923 222 86 32 chr12 50720143 50720422 -93066033 - L1ME3 LINE L1 -325 5837 5504 379 93 37 0 chr12 50720454 50720508 -93065947 - AluJ/FLAM SINE Alu -211 91 36 625 231 201 24 chr12 50720574 50720924 -93065531 - L1ME2 LINE L1 -227 5935 5526 2647 51 0 13 chr12 50721274 50721589 -93064866 + AluY SINE Alu 1 311 0 2368 99 0 0 chr12 50722023 50722326 -93064129 + AluSx SINE Alu 1 303 -9 2325 118 0 0 chr12 50722326 50722632 -93063823 + AluSq SINE Alu 1 306 -7 187 195 0 24 chr12 50722858 50722899 -93063556 - L2 LINE L2 -18 3254 3215 937 203 42 5 chr12 50722902 50723094 -93063361 - MER58A DNA MER1_type -1 223 25 2018 256 116 25 chr12 50723154 50723964 -93062491 - L2 LINE L2 -145 3168 2269 1164 190 5 15 chr12 50724291 50724496 -93061959 + AluJo SINE Alu 1 203 -109 937 212 78 48 chr12 50724613 50724844 -93061611 - AluJo SINE Alu -69 243 6 601 139 78 42 chr12 50724859 50724968 -93061487 + LTR37A LTR ERV1 255 373 -53 2046 123 36 3 chr12 50724968 50725270 -93061185 - AluSx SINE Alu 0 312 1 601 139 78 42 chr12 50725270 50725326 -93061129 + LTR37A LTR ERV1 373 426 0 889 146 8 0 chr12 50726837 50726967 -93059488 + FLAM_C SINE Alu 1 131 -12 2224 121 7 0 chr12 50726979 50727286 -93059169 + AluSx SINE Alu 3 311 -1 440 306 55 18 chr12 50728372 50728591 -93057864 + L3 LINE CR1 582 808 -769 236 271 29 0 chr12 50728719 50728789 -93057666 + L3 LINE CR1 1373 1444 -133 1628 142 7 40 chr12 50728827 50729101 -93057354 - AluJb SINE Alu -19 293 29 273 257 9 80 chr12 50729246 50729359 -93057096 + HsTC2 DNA Tc2 1 105 -1793 3391 176 192 27 chr12 50729521 50730485 -93055970 + MER52C LTR ERV1 37 1278 0 1952 152 0 16 chr12 50730969 50731279 -93055176 + AluJo SINE Alu 1 305 -7 23 0 0 0 chr12 50731417 50731440 -93055015 + AT_rich Low_complexity Low_complexity 1 23 0 1300 157 16 65 chr12 50731444 50731692 -93054763 - AluJo SINE Alu -24 288 53 1591 210 82 3 chr12 50731695 50732023 -93054432 - MSTD LTR MaLR -42 354 1 2197 97 13 13 chr12 50732093 50732403 -93054052 - AluSx SINE Alu -2 310 1 1998 134 0 20 chr12 50732936 50733241 -93053214 - AluJb SINE Alu -13 299 1 2362 91 3 0 chr12 50733555 50733851 -93052604 + AluSg SINE Alu 1 297 -13 2588 53 0 0 chr12 50733852 50734156 -93052299 + AluY SINE Alu 1 304 -7 367 243 32 86 chr12 50735258 50735538 -93050917 - AluJb SINE Alu -1 301 37 539 258 129 37 chr12 50736137 50736354 -93050101 + MLT1J LTR MaLR 275 511 0 322 184 165 55 chr12 50737000 50737084 -93049371 + L1MC5 LINE L1 7809 7909 -52 2527 74 0 6 chr12 50737084 50737395 -93049060 - AluSc SINE Alu 0 309 1 322 184 165 55 chr12 50737395 50737419 -93049036 + L1MC5 LINE L1 7909 7929 -32 2083 120 7 0 chr12 50737455 50737739 -93048716 - AluSx SINE Alu -26 286 1 1352 301 35 24 chr12 50738044 50738691 -93047764 - L2 LINE L2 -241 3072 2422 662 243 180 43 chr12 50738703 50739003 -93047452 + L2 LINE L2 2526 2866 -448 352 244 256 30 chr12 50738977 50739207 -93047248 + L2 LINE L2 3028 3309 -4 * 670 262 108 23 chr12 50739218 50739561 -93046894 - L2 LINE L2 -900 2414 2043 2226 90 45 30 chr12 50739615 50739947 -93046508 - MER1B DNA MER1_type 0 337 1 1372 174 0 5 chr12 50740102 50740321 -93046134 + AluJb SINE Alu 1 218 -94 354 281 15 59 chr12 50740690 50740825 -93045630 - MLT1-int LTR MaLR -487 884 756 584 156 227 0 chr12 50740980 50741108 -93045347 + MER58C DNA MER1_type 59 215 0 1871 158 24 0 chr12 50741180 50741477 -93044978 - AluJo SINE Alu -8 304 1 1940 84 38 11 chr12 50741522 50741784 -93044671 - AluSg SINE Alu -21 289 21 1086 98 0 0 chr12 50741787 50741919 -93044536 - AluSq/x SINE Alu -180 132 1 318 324 28 23 chr12 50742040 50742216 -93044239 - MLT1-int LTR MaLR -831 540 364 1025 153 185 0 chr12 50742274 50742463 -93043992 - MER58A DNA MER1_type 0 224 1 440 274 91 6 chr12 50742650 50742825 -93043630 - MLT1F1 LTR MaLR 0 567 378 384 229 228 48 chr12 50742867 50743046 -93043409 - MLT1F1 LTR MaLR -195 395 249 2023 115 18 7 chr12 50743046 50743359 -93043096 - AluSx SINE Alu 0 316 1 384 229 228 48 chr12 50743359 50743496 -93042959 - MLT1F1 LTR MaLR -341 249 3 1087 173 5 5 chr12 50744469 50744660 -93041795 - AluY SINE Alu -26 285 95 1305 130 5 0 chr12 50744683 50744867 -93041588 - AluJb SINE Alu -6 306 122 1768 108 4 0 chr12 50744879 50745119 -93041336 - AluSq SINE Alu -18 295 55 425 138 0 0 chr12 50746242 50746300 -93040155 - MER47A DNA MER2_type 0 366 309 1581 149 50 36 chr12 50746300 50746547 -93039908 - AluJb SINE Alu -13 299 46 2164 143 40 0 chr12 50746547 50746897 -93039558 + THE1B LTR MaLR 1 364 0 1581 149 50 36 chr12 50746897 50746930 -93039525 - AluJb SINE Alu -266 46 15 2161 132 0 3 chr12 50746930 50747248 -93039207 - MER47A DNA MER2_type -49 317 1 1120 167 91 32 chr12 50747527 50747748 -93038707 + MER46A DNA MER2_type 3 236 0 23 0 0 0 chr12 50747773 50747796 -93038659 + AT_rich Low_complexity Low_complexity 1 23 0 1721 121 54 37 chr12 50748090 50748388 -93038067 + AluJo SINE Alu 1 303 -9 405 269 8 25 chr12 50748390 50748509 -93037946 + L1MC/D LINE L1 5692 5808 -2000 236 304 184 45 chr12 50748534 50749239 -93037216 - L2 LINE L2 -512 2802 2000 1967 113 7 24 chr12 50749901 50750192 -93036263 + AluSx SINE Alu 16 301 -11 660 209 8 0 chr12 50751034 50751163 -93035292 - MSTC LTR MaLR -80 348 219 217 306 41 31 chr12 50751623 50751721 -93034734 + L2 LINE L2 3174 3272 0 341 271 19 37 chr12 50751743 50751850 -93034605 + MIR SINE MIR 42 146 -62 259 314 23 0 chr12 50751873 50751959 -93034496 + L2 LINE L2 3190 3277 -36 2385 100 0 0 chr12 50752011 50752320 -93034135 + AluSx SINE Alu 1 309 -3 1893 165 26 0 chr12 50752322 50752625 -93033830 + AluJo SINE Alu 2 312 0 530 246 39 8 chr12 50752765 50752895 -93033560 + L2 LINE L2 3139 3272 0 344 47 0 0 chr12 50753253 50753296 -93033159 + (TG)n Simple_repeat Simple_repeat 2 44 0 1017 151 0 0 chr12 50753405 50753551 -93032904 + C-rich Low_complexity Low_complexity 1 146 0 513 236 18 26 chr12 50753562 50754047 -93032408 + CT-rich Low_complexity Low_complexity 1 481 0 2138 113 3 13 chr12 50754393 50754702 -93031753 - AluSq SINE Alu -7 306 1 1771 133 93 4 chr12 50755061 50755340 -93031115 - AluJo SINE Alu -8 304 1 2252 94 3 10 chr12 50755355 50755652 -93030803 - AluSx SINE Alu -16 296 2 2785 247 126 20 chr12 50755773 50756795 -93029660 + L2 LINE L2 8 1137 -2177 591 233 19 13 chr12 50756839 50756998 -93029457 + AluJo SINE Alu 121 280 -32 3582 142 55 41 chr12 50757311 50757323 -93029132 + L1MB2 LINE L1 5424 5434 -737 1535 169 14 0 chr12 50757323 50757626 -93028829 + AluSx SINE Alu 1 307 0 3582 142 55 41 chr12 50757626 50758300 -93028155 + L1MB2 LINE L1 5434 6121 -50 2152 109 0 0 chr12 50758308 50758592 -93027863 - AluSg SINE Alu -26 284 1 474 293 36 6 chr12 50758608 50758775 -93027680 + L1MC/D LINE L1 5455 5626 -2182 1083 164 193 0 chr12 50758780 50758993 -93027462 - AluJb SINE Alu -18 294 41 293 289 67 22 chr12 50759770 50759905 -93026550 - MIR SINE MIR -109 153 13 822 126 42 0 chr12 50759947 50760066 -93026389 - AluJb SINE Alu -188 124 1 2147 117 3 7 chr12 50760339 50760638 -93025817 - AluSx SINE Alu -14 298 1 771 159 0 15 chr12 50761285 50761417 -93025038 - AluSq/x SINE Alu -182 131 2 201 351 21 21 chr12 50761488 50761582 -93024873 + MIR SINE MIR 22 115 -147 22 35 0 0 chr12 50761583 50761612 -93024843 + AT_rich Low_complexity Low_complexity 1 29 0 1728 175 21 39 chr12 50761721 50762058 -93024397 - MER58B DNA MER1_type -10 331 1 1887 162 26 0 chr12 50762258 50762560 -93023895 + AluJo SINE Alu 1 310 -2 1913 137 20 0 chr12 50763032 50763325 -93023130 + AluSx SINE Alu 2 300 -12 1836 149 0 36 chr12 50763537 50763838 -93022617 - AluJb SINE Alu -17 295 6 286 227 31 52 chr12 50763842 50763939 -93022516 - MIR SINE MIR -8 254 160 1216 96 0 0 chr12 50764331 50764488 -93021967 + AluSp/q SINE Alu 157 313 0 1686 143 0 21 chr12 50764757 50765036 -93021419 - AluSx SINE Alu -10 302 30 38 39 0 0 chr12 50765295 50765347 -93021108 + GC_rich Low_complexity Low_complexity 1 52 0 49 43 0 0 chr12 50765366 50765436 -93021019 + GC_rich Low_complexity Low_complexity 1 70 0 23 78 0 0 chr12 50765473 50765524 -93020931 + GC_rich Low_complexity Low_complexity 1 51 0 1878 126 102 3 chr12 50765885 50766227 -93020228 - L1MB3 LINE L1 -14 6169 5794 24 0 0 0 chr12 50766844 50766868 -93019587 + AT_rich Low_complexity Low_complexity 1 24 0 2048 106 0 35 chr12 50767058 50767342 -93019113 - AluSx SINE Alu -36 276 3 2431 92 13 0 chr12 50767364 50767670 -93018785 - AluSx SINE Alu -2 310 1 2149 114 10 13 chr12 50767682 50767990 -93018465 - AluSx SINE Alu -4 308 2 1880 144 49 0 chr12 50768291 50768576 -93017879 - AluSx SINE Alu -13 299 1 2175 105 7 3 chr12 50768839 50769135 -93017320 - AluSg SINE Alu -13 297 1 2562 190 100 31 chr12 50769419 50770130 -93016325 + L1ME3 LINE L1 5384 6143 -19 7342 16 2 383 chr12 50770227 50772463 -93013992 + SVA Other Other 3 1386 0 1825 159 7 10 chr12 50772483 50772779 -93013676 + AluJb SINE Alu 1 295 -17 2527 65 0 13 chr12 50772779 50773086 -93013369 + AluY SINE Alu 1 303 -8 204 146 21 42 chr12 50773124 50773172 -93013283 + (TTATA)n Simple_repeat Simple_repeat 3 49 0 21 36 0 0 chr12 50773216 50773244 -93013211 + AT_rich Low_complexity Low_complexity 1 28 0 982 152 52 24 chr12 50773618 50773828 -93012627 + L1MB4 LINE L1 5952 6167 -13 3867 163 62 62 chr12 50773835 50774450 -93012005 + L1MB2 LINE L1 4661 5274 -897 201 39 0 0 chr12 50774450 50774476 -93011979 + (CAA)n Simple_repeat Simple_repeat 3 28 0 3867 163 62 62 chr12 50774476 50774658 -93011797 + L1MB2 LINE L1 5274 5454 -717 2223 75 8 0 chr12 50774658 50774951 -93011504 + AluSx SINE Alu 13 307 0 3867 163 62 62 chr12 50774951 50775625 -93010830 + L1MB2 LINE L1 5454 6121 -50 2018 113 11 0 chr12 50775633 50775916 -93010539 - AluSx SINE Alu -26 286 1 2319 99 3 0 chr12 50776370 50776664 -93009791 + AluSq SINE Alu 1 295 -18 1085 247 171 13 chr12 50777363 50777840 -93008615 + L2 LINE L2 2489 3037 -276 246 189 0 38 chr12 50777845 50777898 -93008557 + L1M4b LINE L1 153 203 -6656 1853 168 0 0 chr12 50778183 50778474 -93007981 + AluJo SINE Alu 3 293 -19 995 219 0 25 chr12 50778482 50778683 -93007772 + AluJb SINE Alu 93 288 -24 324 268 53 91 chr12 50778739 50778982 -93007473 + L1M4b LINE L1 982 1215 -5640 26 0 0 0 chr12 50778982 50779008 -93007447 + AT_rich Low_complexity Low_complexity 1 26 0 1862 155 10 7 chr12 50779205 50779502 -93006953 - AluJb SINE Alu -11 301 4 2465 87 0 3 chr12 50779943 50780253 -93006202 + AluY SINE Alu 1 309 -2 1637 190 28 3 chr12 50780288 50780577 -93005878 - AluJo SINE Alu -16 296 1 26 0 0 0 chr12 50780584 50780610 -93005845 + AT_rich Low_complexity Low_complexity 1 26 0 743 237 85 96 chr12 50780617 50780925 -93005530 + L1M4b LINE L1 1188 1487 -5368 2620 36 0 13 chr12 50780925 50781231 -93005224 - AluY SINE Alu -9 302 1 743 237 85 96 chr12 50781231 50781525 -93004930 + L1M4b LINE L1 1487 1783 -5072 2156 128 0 10 chr12 50781529 50781834 -93004621 + AluSx SINE Alu 1 302 -10 207 100 0 0 chr12 50782103 50782133 -93004322 + (T)n Simple_repeat Simple_repeat 1 30 0 1147 102 88 15 chr12 50782567 50782888 -93003567 + AluSc SINE Alu 90 425 0 2133 87 6 90 chr12 50782888 50783221 -93003234 + AluYb8 SINE Alu 1 305 -13 2053 98 16 47 chr12 50783559 50783876 -93002579 + AluY SINE Alu 1 307 -4 2460 213 57 35 chr12 50783884 50784453 -93002002 + L1M4 LINE L1 4407 4997 -1149 2259 84 0 42 chr12 50784453 50784764 -93001691 + AluSg1 SINE Alu 1 298 -11 2460 213 57 35 chr12 50784764 50784918 -93001537 + L1M4 LINE L1 4997 5146 -1000 585 154 0 0 chr12 50785034 50785125 -93001330 - AluS SINE Alu -221 92 2 2160 127 0 6 chr12 50785418 50785732 -93000723 + AluSx SINE Alu 1 312 0 293 289 67 22 chr12 50786211 50786346 -93000109 - MIR SINE MIR -109 153 13 822 126 42 0 chr12 50786388 50786507 -92999948 - AluJb SINE Alu -188 124 1 2175 120 0 7 chr12 50786780 50787080 -92999375 - AluSx SINE Alu -14 298 1 21 0 0 0 chr12 50787152 50787173 -92999282 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 50788329 50788355 -92998100 + AT_rich Low_complexity Low_complexity 1 26 0 1536 115 14 5 chr12 50789272 50789489 -92996966 - AluSg/x SINE Alu -18 294 76 21 0 0 0 chr12 50789824 50789845 -92996610 + AT_rich Low_complexity Low_complexity 1 21 0 1593 130 5 0 chr12 50789857 50790080 -92996375 - AluSx SINE Alu -88 224 1 2093 143 3 0 chr12 50790084 50790391 -92996064 - AluSq SINE Alu -5 308 1 2242 66 45 3 chr12 50790845 50791131 -92995324 + AluY SINE Alu 1 298 -13 300 301 49 8 chr12 50793111 50793234 -92993221 + FLAM_C SINE Alu 5 132 -1 639 158 108 75 chr12 50793380 50793419 -92993036 - L1M4 LINE L1 -747 5399 5363 2111 129 10 3 chr12 50793419 50793722 -92992733 - AluJb SINE Alu -7 305 1 639 158 108 75 chr12 50793722 50793922 -92992533 - L1M4 LINE L1 -783 5363 5152 23 0 0 0 chr12 50793942 50793965 -92992490 + AT_rich Low_complexity Low_complexity 1 23 0 1576 72 0 76 chr12 50793965 50794091 -92992364 - L1PB1 LINE L1 -7 6144 6043 2293 82 7 3 chr12 50794091 50794382 -92992073 - AluY SINE Alu -19 292 1 1576 72 0 76 chr12 50794382 50794491 -92991964 - L1PB1 LINE L1 -108 6043 5927 3494 133 4 18 chr12 50794491 50795048 -92991407 - L1PA16 LINE L1 -12 6154 5605 2483 82 0 9 chr12 50795048 50795364 -92991091 - AluSq SINE Alu 0 313 1 2105 127 13 3 chr12 50795366 50795673 -92990782 - AluJb SINE Alu -2 310 1 3632 231 24 38 chr12 50795675 50795688 -92990767 - L1P LINE L1 -3097 3049 3037 2533 71 0 0 chr12 50795688 50795985 -92990470 - AluY SINE Alu -14 297 1 3632 231 24 38 chr12 50795985 50796584 -92989871 - L1P LINE L1 -3109 3037 2428 1651 121 18 0 chr12 50796584 50796808 -92989647 + MER30 DNA MER1_type 2 229 -1 3632 231 24 38 chr12 50796808 50797344 -92989111 - L1P LINE L1 -3718 2428 1886 252 0 0 0 chr12 50797344 50797372 -92989083 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 108 7 7 chr12 50797374 50797652 -92988803 - AluSc SINE Alu -31 278 1 225 195 24 0 chr12 50797671 50797712 -92988743 - Alu SINE Alu -16 283 242 1787 223 49 24 chr12 50797820 50798875 -92987580 + L1M4 LINE L1 2486 3644 -2502 2265 113 0 7 chr12 50798875 50799184 -92987271 - AluSx SINE Alu -5 307 1 1787 223 49 24 chr12 50799184 50799234 -92987221 + L1M4 LINE L1 3644 3691 -2455 2086 98 7 14 chr12 50799380 50799707 -92986748 + AluSp SINE Alu 1 325 0 21 0 0 0 chr12 50800277 50800298 -92986157 + AT_rich Low_complexity Low_complexity 1 21 0 1533 131 9 0 chr12 50800310 50800532 -92985923 - AluSx SINE Alu -88 224 1 2082 136 0 7 chr12 50800536 50800845 -92985610 - AluSq SINE Alu -5 308 2 426 216 0 10 chr12 50800859 50800956 -92985499 + MER5A DNA MER1_type 3 98 -91 1500 177 59 36 chr12 50801552 50801711 -92984744 - AluJo SINE Alu 0 312 158 2286 94 27 0 chr12 50801711 50802009 -92984446 - AluSx SINE Alu -6 306 1 1500 177 59 36 chr12 50802009 50802154 -92984301 - AluJo SINE Alu -154 158 1 932 178 19 24 chr12 50802348 50802556 -92983899 + AluJb SINE Alu 1 207 -105 757 158 0 9 chr12 50802897 50803011 -92983444 + AluSg/x SINE Alu 188 300 -9 2241 112 0 10 chr12 50803131 50803434 -92983021 - AluSq SINE Alu -13 300 1 465 307 25 57 chr12 50804085 50804329 -92982126 + MIR SINE MIR 12 247 -15 1440 220 33 10 chr12 50804430 50804734 -92981721 - AluJo SINE Alu -1 311 1 1315 153 34 13 chr12 50804734 50804969 -92981486 - L1MB3 LINE L1 -32 6151 5912 1457 163 54 22 chr12 50804969 50805246 -92981209 + AluJb SINE Alu 1 286 -26 465 216 95 20 chr12 50805265 50805413 -92981042 - L1MC5 LINE L1 -38 7923 7765 306 278 82 30 chr12 50805428 50805699 -92980756 + L1ME3 LINE L1 5077 5372 -774 34 0 0 0 chr12 50805699 50805733 -92980722 + AT_rich Low_complexity Low_complexity 1 34 0 1997 117 7 36 chr12 50805861 50806168 -92980287 + AluJb SINE Alu 1 298 -14 1900 148 7 7 chr12 50806236 50806519 -92979936 + AluSx SINE Alu 1 283 -29 1264 270 56 21 chr12 50806539 50806965 -92979490 + L1ME3 LINE L1 5522 5962 -208 265 61 0 0 chr12 50807001 50807034 -92979421 - THE1A LTR MaLR 0 355 323 270 288 58 43 chr12 50807041 50807180 -92979275 + L1ME3 LINE L1 5962 6102 -60 511 250 59 64 chr12 50807793 50807883 -92978572 + L1ME3A LINE L1 5728 5817 -353 2239 141 39 20 chr12 50807883 50808238 -92978217 - THE1B LTR MaLR 0 364 3 511 250 59 64 chr12 50808238 50808383 -92978072 + L1ME3A LINE L1 5817 5962 -208 2088 105 7 11 chr12 50808531 50808845 -92977610 - AluSx SINE Alu 0 313 1 3823 115 100 60 chr12 50809095 50809825 -92976630 + LTR1 LTR ERV1 27 785 0 2274 88 17 0 chr12 50809927 50810222 -92976233 + AluSp SINE Alu 1 300 -13 1998 142 0 19 chr12 50811065 50811381 -92975074 - AluJo SINE Alu -2 310 1 3381 173 192 27 chr12 50811865 50812829 -92973626 - MER52C LTR ERV1 0 1278 37 280 258 129 11 chr12 50813589 50813682 -92972773 + L2 LINE L2 3137 3240 -32 1099 198 9 5 chr12 50813683 50813905 -92972550 - L1M3 LINE L1 -485 5698 5476 2187 110 7 0 chr12 50814435 50814727 -92971728 + AluSp SINE Alu 1 294 -19 413 235 203 13 chr12 50814731 50814884 -92971571 + L1MEd LINE L1 76 257 -5862 1708 141 25 14 chr12 50814903 50815186 -92971269 + AluJb SINE Alu 22 307 -5 275 239 80 45 chr12 50815188 50815276 -92971179 + L1MEd LINE L1 310 400 -5719 2007 125 20 14 chr12 50815278 50815573 -92970882 - AluSx SINE Alu -15 297 1 506 292 121 23 chr12 50815714 50815971 -92970484 + L1MC4a LINE L1 6422 6703 -1105 998 63 16 0 chr12 50815976 50816103 -92970352 - AluY SINE Alu -7 304 176 295 193 17 6 chr12 50816103 50816181 -92970274 + Alu SINE Alu 251 294 -6 1987 94 22 11 chr12 50816280 50816592 -92969863 + AluSc SINE Alu 2 316 0 2166 130 3 0 chr12 50816719 50817020 -92969435 + AluSx SINE Alu 1 302 -10 1927 136 36 0 chr12 50817126 50817405 -92969050 + AluSx SINE Alu 1 289 -23 2215 66 45 3 chr12 50817424 50817710 -92968745 + AluY SINE Alu 1 298 -13 202 308 273 21 chr12 50818895 50819038 -92967417 - MER5A DNA MER1_type -1 188 10 1827 172 3 0 chr12 50819690 50819992 -92966463 + AluJb SINE Alu 1 303 -9 847 272 51 77 chr12 50820098 50820568 -92965887 - LTR33 LTR ERVL -4 517 60 984 134 0 14 chr12 50820933 50821075 -92965380 - AluJb SINE Alu -14 298 159 387 0 0 0 chr12 50821101 50821144 -92965311 + (TA)n Simple_repeat Simple_repeat 2 44 0 2473 81 3 0 chr12 50821144 50821453 -92965002 - AluSx SINE Alu -2 310 1 3155 192 80 32 chr12 50821453 50822272 -92964183 + L1ME1 LINE L1 5184 6210 -124 1627 169 16 58 chr12 50822272 50822468 -92963987 - AluJo SINE Alu -12 300 120 2390 87 0 23 chr12 50822468 50822778 -92963677 - AluSp SINE Alu -10 303 1 1627 169 16 58 chr12 50822778 50822894 -92963561 - AluJo SINE Alu -192 120 1 3155 192 80 32 chr12 50822894 50823023 -92963432 + L1ME1 LINE L1 6210 6331 -3 237 208 208 19 chr12 50823039 50823145 -92963310 - MER5C DNA MER1_type -196 128 3 2436 68 0 26 chr12 50823683 50823992 -92962463 - AluY SINE Alu -10 301 1 24 67 0 0 chr12 50824004 50824049 -92962406 + AT_rich Low_complexity Low_complexity 1 45 0 1503 190 111 135 chr12 50824068 50824914 -92961541 + LTR1B LTR ERV1 1 826 0 2266 85 0 11 chr12 50826645 50826928 -92959527 - AluSc SINE Alu -17 292 13 1585 73 11 103 chr12 50826974 50827279 -92959176 - AluSq SINE Alu 0 314 35 269 288 105 72 chr12 50827813 50827967 -92958488 - MIR SINE MIR -63 145 10 2203 125 0 6 chr12 50828041 50828354 -92958101 + AluSx SINE Alu 1 311 -1 200 250 0 23 chr12 50828377 50828421 -92958034 + L2 LINE L2 3248 3290 -23 1880 140 7 17 chr12 50829179 50829472 -92956983 + AluJo SINE Alu 1 290 -22 718 240 83 22 chr12 50829499 50829723 -92956732 + L1MC/D LINE L1 5586 5819 -309 2310 79 0 13 chr12 50830002 50830307 -92956148 - AluSx SINE Alu -7 305 5 2368 47 3 20 chr12 50830318 50830615 -92955840 - AluY SINE Alu -19 292 1 261 0 0 0 chr12 50830630 50830659 -92955796 + (A)n Simple_repeat Simple_repeat 1 29 0 2298 82 17 0 chr12 50831163 50831455 -92955000 - AluSc SINE Alu -12 297 1 2191 102 3 0 chr12 50831455 50831737 -92954718 - AluSp SINE Alu -29 284 1 1108 129 7 0 chr12 50831815 50831970 -92954485 + AluSp SINE Alu 135 290 -23 2276 78 19 13 chr12 50831980 50832289 -92954166 + AluY SINE Alu 1 311 0 1131 198 161 0 chr12 50832290 50832639 -92953816 + L1M4 LINE L1 2167 2571 -3575 2576 100 43 6 chr12 50832639 50832990 -92953465 + THE1B LTR MaLR 1 364 0 2293 85 0 0 chr12 50833010 50833320 -92953135 + AluSg SINE Alu 1 310 0 1087 224 5 5 chr12 50833423 50833637 -92952818 + MER58A DNA MER1_type 1 214 -10 389 269 35 0 chr12 50833645 50833786 -92952669 + L1M4 LINE L1 2727 2872 -3274 1167 146 141 0 chr12 50833789 50833988 -92952467 - AluJb SINE Alu -8 304 78 2007 233 113 37 chr12 50833988 50834085 -92952370 + L1M4 LINE L1 2864 2952 -3194 2493 73 0 6 chr12 50834085 50834398 -92952057 + AluY SINE Alu 1 311 0 2007 233 113 37 chr12 50834398 50834987 -92951468 + L1M4 LINE L1 2952 3495 -2651 2404 92 0 0 chr12 50834987 50835292 -92951163 + AluSc SINE Alu 1 305 -4 2285 119 0 3 chr12 50835296 50835606 -92950849 + AluSx SINE Alu 3 311 -1 2007 233 113 37 chr12 50835606 50835640 -92950815 + L1M4 LINE L1 3497 3645 -2501 2390 177 96 88 chr12 50835642 50836257 -92950198 + MLT1E2 LTR MaLR 1 622 -4 4905 202 53 61 chr12 50836265 50836319 -92950136 + L1M4 LINE L1 3647 3700 -2446 2159 128 3 6 chr12 50836319 50836632 -92949823 + AluSx SINE Alu 1 312 0 4905 202 53 61 chr12 50836632 50836698 -92949757 + L1M4 LINE L1 3700 3765 -2381 1966 142 3 25 chr12 50836698 50837015 -92949440 + AluJb SINE Alu 1 310 -2 4905 202 53 61 chr12 50837015 50837619 -92948836 + L1M4 LINE L1 3765 4372 -1774 2254 108 0 0 chr12 50837619 50837915 -92948540 + AluSq SINE Alu 1 296 -17 4905 202 53 61 chr12 50837915 50838004 -92948451 + L1M4 LINE L1 4372 4460 -1686 1771 158 10 26 chr12 50838004 50838315 -92948140 + AluJo SINE Alu 1 306 -6 4905 202 53 61 chr12 50838315 50839050 -92947405 + L1M4 LINE L1 4460 5186 -960 940 195 74 9 chr12 50839056 50839271 -92947184 + L1MB3 LINE L1 4769 4997 -1149 2418 146 36 7 chr12 50839271 50839690 -92946765 + L1MB3 LINE L1 5651 6081 -102 942 102 0 22 chr12 50839702 50839839 -92946616 - FRAM SINE Alu 0 40 1 241 250 18 0 chr12 50841401 50841457 -92944998 + MIR SINE MIR 184 240 -22 194 333 18 0 chr12 50841424 50841481 -92944974 + L2 LINE L2 3252 3309 -4 * 1829 192 50 46 chr12 50841515 50841752 -92944703 + L1MC4 LINE L1 7324 7565 -477 2311 95 3 0 chr12 50841752 50842046 -92944409 + AluSc SINE Alu 1 295 -14 1829 192 50 46 chr12 50842046 50842267 -92944188 + L1MC4 LINE L1 7565 7784 -258 1626 238 32 42 chr12 50842388 50842863 -92943592 - L1MC/D LINE L1 -1988 5820 5351 185 0 40 0 chr12 50843173 50843198 -92943257 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2256 91 0 14 chr12 50843678 50843975 -92942480 - AluY SINE Alu -18 293 1 1064 53 0 8 chr12 50844051 50844182 -92942273 - MER85 DNA T2_type -9 130 1 234 0 0 0 chr12 50844746 50844772 -92941683 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 706 198 0 0 chr12 50844774 50844890 -92941565 - FLAM_A SINE Alu -17 116 1 2380 90 0 0 chr12 50845871 50846172 -92940283 - AluY SINE Alu -10 301 1 216 0 0 0 chr12 50846622 50846646 -92939809 + (TA)n Simple_repeat Simple_repeat 2 25 0 937 241 59 33 chr12 50847037 50847268 -92939187 - L1MEc LINE L1 -5215 1181 957 2332 92 27 0 chr12 50847268 50847563 -92938892 - AluSq SINE Alu -10 303 1 937 241 59 33 chr12 50847563 50847869 -92938586 - L1MEc LINE L1 -5439 957 660 515 81 12 0 chr12 50847869 50847955 -92938500 + (TTTTG)n Simple_repeat Simple_repeat 2 88 0 937 241 59 33 chr12 50847955 50848374 -92938081 - L1MEc LINE L1 -5736 660 45 26 30 0 0 chr12 50848497 50848530 -92937925 + AT_rich Low_complexity Low_complexity 1 33 0 2523 63 3 0 chr12 50848969 50849272 -92937183 + AluY SINE Alu 1 304 -7 1449 173 0 45 chr12 50849419 50849685 -92936770 - AluJb SINE Alu -6 306 53 1532 204 82 3 chr12 50849688 50850016 -92936439 - MSTD LTR MaLR -42 354 1 2223 97 13 13 chr12 50850086 50850396 -92936059 - AluSx SINE Alu -2 310 1 1989 138 0 22 chr12 50850923 50851234 -92935221 - AluJb SINE Alu -8 304 1 2344 91 3 3 chr12 50851548 50851845 -92934610 + AluSg SINE Alu 1 297 -13 2597 53 0 0 chr12 50851846 50852150 -92934305 + AluY SINE Alu 1 304 -7 1944 143 33 3 chr12 50853239 50853540 -92932915 - AluJb SINE Alu -2 310 1 23 0 0 0 chr12 50853834 50853857 -92932598 + AT_rich Low_complexity Low_complexity 1 23 0 1118 167 91 32 chr12 50853882 50854103 -92932352 - MER46A DNA MER2_type 0 236 3 2123 117 0 109 chr12 50854382 50854733 -92931722 + MER47A DNA MER2_type 1 389 -1934 2234 137 40 0 chr12 50854733 50855083 -92931372 - THE1B LTR MaLR 0 364 1 1461 158 57 16 chr12 50855083 50855330 -92931125 + AluJb SINE Alu 43 299 -13 2123 117 0 109 chr12 50855330 50855388 -92931067 + MER47A DNA MER2_type 303 366 0 2252 98 0 30 chr12 50856688 50856993 -92929462 - AluSx SINE Alu -16 296 1 818 178 7 0 chr12 50857076 50857211 -92929244 - AluJo SINE Alu -176 136 1 2152 128 3 0 chr12 50857258 50857546 -92928909 + AluSx SINE Alu 1 289 -23 1655 164 47 7 chr12 50857745 50858043 -92928412 - AluSx SINE Alu -2 310 1 1876 119 26 4 chr12 50858045 50858314 -92928141 + AluSx SINE Alu 38 312 0 1785 147 17 38 chr12 50858458 50858751 -92927704 + AluJo SINE Alu 11 297 -15 2031 137 7 10 chr12 50858755 50859054 -92927401 + AluJb SINE Alu 3 300 -12 1690 145 112 0 chr12 50859414 50859683 -92926772 + AluSx SINE Alu 5 303 -9 338 259 69 8 chr12 50860420 50860551 -92925904 - L1MC4 LINE L1 -121 7921 7783 21 36 0 0 chr12 50860846 50860874 -92925581 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr12 50861683 50861718 -92924737 + (TG)n Simple_repeat Simple_repeat 1 35 0 2515 40 7 3 chr12 50862347 50862643 -92923812 + AluY SINE Alu 1 297 -14 1790 146 48 27 chr12 50864207 50864329 -92922126 + AluJb SINE Alu 1 119 -193 2639 71 0 0 chr12 50864329 50864638 -92921817 + AluSc SINE Alu 1 309 0 297 0 0 0 chr12 50864640 50864673 -92921782 + (TA)n Simple_repeat Simple_repeat 1 33 0 1790 146 48 27 chr12 50864673 50864841 -92921614 + AluJb SINE Alu 119 300 -12 306 209 100 27 chr12 50864864 50864889 -92921566 - L1MC5 LINE L1 -35 7926 7904 2562 71 0 6 chr12 50864889 50865200 -92921255 + AluSc SINE Alu 1 309 0 306 209 100 27 chr12 50865200 50865284 -92921171 - L1MC5 LINE L1 -57 7904 7809 189 229 0 0 chr12 50865590 50865625 -92920830 - MIR3 SINE MIR -3 205 171 496 261 124 37 chr12 50865930 50866148 -92920307 - MLT1J LTR MaLR 0 511 275 265 252 71 40 chr12 50866879 50867062 -92919393 + L1MC/D LINE L1 5732 5921 -245 596 335 162 11 chr12 50867721 50868264 -92918191 + L2 LINE L2 2342 2966 -348 2288 91 0 29 chr12 50868278 50868445 -92918010 - AluSx SINE Alu -14 298 143 2416 91 0 0 chr12 50868445 50868742 -92917713 - AluSp SINE Alu -15 298 2 2288 91 0 29 chr12 50868742 50868881 -92917574 - AluSx SINE Alu -169 143 1 317 291 99 50 chr12 50868956 50869097 -92917358 + L2 LINE L2 3115 3262 -10 2202 117 20 0 chr12 50869184 50869482 -92916973 - AluSx SINE Alu -8 304 1 1580 173 9 64 chr12 50871656 50871985 -92914470 + AluJo SINE Alu 1 311 -1 2378 85 0 3 chr12 50872134 50872427 -92914028 + AluY SINE Alu 2 293 -18 2433 88 0 0 chr12 50875410 50875706 -92910749 + AluSg SINE Alu 1 296 -14 250 183 61 146 chr12 50876902 50876984 -92909471 - L1ME4a LINE L1 -65 6056 5993 800 206 90 0 chr12 50876984 50877139 -92909316 - FAM SINE Alu -5 170 2 250 183 61 146 chr12 50877139 50877220 -92909235 - L1ME4a LINE L1 -128 5993 5907 2229 102 3 0 chr12 50877220 50877503 -92908952 + AluSp SINE Alu 1 284 -29 2328 88 17 0 chr12 50877503 50877799 -92908656 + AluSc SINE Alu 1 302 -7 270 0 0 0 chr12 50878297 50878327 -92908128 + (T)n Simple_repeat Simple_repeat 1 30 0 2398 47 3 20 chr12 50878342 50878639 -92907816 + AluY SINE Alu 1 292 -19 2349 79 0 13 chr12 50878650 50878955 -92907500 + AluSx SINE Alu 5 305 -7 661 240 83 22 chr12 50879234 50879458 -92906997 - L1ME4a LINE L1 -309 5812 5586 1917 142 7 17 chr12 50879482 50879778 -92906677 - AluJo SINE Alu -19 293 1 202 250 0 23 chr12 50880535 50880579 -92905876 - L2 LINE L2 -23 3290 3248 2227 123 0 7 chr12 50880602 50880911 -92905544 - AluSx SINE Alu -1 311 5 278 286 105 72 chr12 50880990 50881144 -92905311 + MIR SINE MIR 10 170 -63 2377 90 0 3 chr12 50882256 50882557 -92903898 + AluSx SINE Alu 1 300 -12 1896 136 0 11 chr12 50882762 50883094 -92903361 - AluSx SINE Alu 0 333 5 324 294 14 42 chr12 50883136 50883279 -92903176 - MIR SINE MIR -120 142 4 206 263 12 25 chr12 50883856 50883902 -92902553 + A-rich Low_complexity Low_complexity 1 47 -32 2240 119 3 3 chr12 50883902 50884214 -92902241 + AluSx SINE Alu 1 312 0 206 263 12 25 chr12 50884214 50884247 -92902208 + A-rich Low_complexity Low_complexity 47 79 0 651 259 19 6 chr12 50884621 50884783 -92901672 + MIR SINE MIR 88 251 -11 267 287 31 62 chr12 50885001 50885130 -92901325 + MIR3 SINE MIR 11 135 -73 471 153 7 44 chr12 50885147 50885284 -92901171 + CT-rich Low_complexity Low_complexity 3 134 0 699 209 58 23 chr12 50885382 50885554 -92900901 - MIR SINE MIR -4 258 81 2258 114 0 0 chr12 50885557 50885863 -92900592 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr12 50885875 50885897 -92900558 + AT_rich Low_complexity Low_complexity 1 22 0 29 94 0 0 chr12 50886493 50886578 -92899877 + GC_rich Low_complexity Low_complexity 1 85 0 30 59 0 0 chr12 50887783 50887834 -92898621 + GC_rich Low_complexity Low_complexity 1 51 0 203 200 108 0 chr12 50889697 50889762 -92896693 + (CATCC)n Simple_repeat Simple_repeat 5 76 0 495 245 46 33 chr12 50891469 50891620 -92894835 + MIR SINE MIR 18 170 -38 191 214 29 43 chr12 50891669 50891739 -92894716 + L2 LINE L2 2910 2978 -294 503 266 85 43 chr12 50892108 50892296 -92894159 + MIR SINE MIR 28 223 -39 270 0 0 0 chr12 50892604 50892634 -92893821 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 2320 70 49 0 chr12 50893873 50894159 -92892296 - AluY SINE Alu -10 301 2 2289 108 7 0 chr12 50895366 50895663 -92890792 - AluSg SINE Alu -11 299 1 223 324 158 36 chr12 50895773 50896103 -92890352 + L2 LINE L2 2853 3222 -50 405 0 0 0 chr12 50896566 50896611 -92889844 + (TG)n Simple_repeat Simple_repeat 1 45 0 312 272 222 6 chr12 50899433 50899613 -92886842 - MIR SINE MIR -24 238 20 2192 119 3 0 chr12 50899769 50900079 -92886376 + AluSx SINE Alu 1 311 -1 510 307 60 18 chr12 50901165 50901383 -92885072 + L3 LINE CR1 582 808 -769 262 271 29 0 chr12 50901511 50901581 -92884874 + L3 LINE CR1 1373 1444 -133 1555 142 7 40 chr12 50901619 50901893 -92884562 - AluJb SINE Alu -19 293 29 415 254 0 63 chr12 50902038 50902164 -92884291 + HsTC2 DNA Tc2 1 118 -1780 248 81 27 0 chr12 50902174 50902211 -92884244 + HsTC2 DNA Tc2 1238 1275 -623 297 283 106 38 chr12 50902337 50902503 -92883952 - MER5A DNA MER1_type 0 189 2 2242 56 16 39 chr12 50903633 50903939 -92882516 + AluY SINE Alu 1 299 -12 254 224 184 10 chr12 50905145 50905243 -92881212 + MIR SINE MIR 38 152 -56 34 0 0 0 chr12 50906737 50906771 -92879684 + AT_rich Low_complexity Low_complexity 1 34 0 319 265 167 23 chr12 50909130 50909262 -92877193 - MIR SINE MIR -99 163 13 368 307 133 0 chr12 50909376 50909526 -92876929 - MER112 DNA MER1_type -1 259 90 541 238 25 0 chr12 50909553 50909675 -92876780 + FLAM_A SINE Alu 1 125 -8 2052 96 38 0 chr12 50910098 50910389 -92876066 - AluSg SINE Alu -7 303 2 265 231 19 93 chr12 50912535 50912643 -92873812 - MIR3 SINE MIR -24 184 85 228 111 0 0 chr12 50913459 50913495 -92872960 + (CCCCAG)n Simple_repeat Simple_repeat 4 39 0 326 357 132 34 chr12 50917057 50917474 -92868981 + L3 LINE CR1 959 1416 -161 399 212 152 82 chr12 50917657 50917701 -92868754 + L1ME4a LINE L1 5834 5873 -248 2015 99 0 40 chr12 50917701 50918005 -92868450 - AluSg SINE Alu -18 292 1 399 212 152 82 chr12 50918005 50918205 -92868250 + L1ME4a LINE L1 5873 6101 -20 2141 108 3 10 chr12 50918205 50918512 -92867943 - AluSx SINE Alu -7 305 1 399 212 152 82 chr12 50918512 50918535 -92867920 + L1ME4a LINE L1 6101 6121 0 1981 130 7 0 chr12 50918550 50918849 -92867606 - AluSx SINE Alu -5 307 7 1622 309 27 11 chr12 50919160 50919804 -92866651 - L2 LINE L2 -241 3072 2422 686 274 181 32 chr12 50919816 50920319 -92866136 + L2 LINE L2 2526 3309 -4 816 291 95 9 chr12 50920330 50920677 -92865778 - L2 LINE L2 -900 2414 2038 2267 90 45 30 chr12 50920726 50921058 -92865397 - MER1B DNA MER1_type 0 337 1 1830 145 3 3 chr12 50921213 50921523 -92864932 + AluJb SINE Alu 1 310 0 760 228 119 9 chr12 50921572 50921791 -92864664 + MIR SINE MIR 20 262 0 243 0 0 0 chr12 50922094 50922121 -92864334 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 443 324 160 14 chr12 50922244 50922519 -92863936 + L1MC/D LINE L1 3991 4305 -1841 2110 140 33 11 chr12 50922635 50922999 -92863456 - THE1C LTR MaLR -3 372 1 326 292 93 12 chr12 50923023 50923184 -92863271 + L1MC/D LINE L1 4487 4660 -1486 507 331 105 62 chr12 50923212 50923393 -92863062 + L1MC/D LINE L1 4607 4779 -1367 2100 119 0 7 chr12 50923393 50923695 -92862760 + AluSx SINE Alu 1 300 -12 507 331 105 62 chr12 50923695 50923905 -92862550 + L1MC/D LINE L1 4779 5040 -1106 2117 124 0 13 chr12 50923905 50924220 -92862235 + AluSx SINE Alu 1 311 -1 507 331 105 62 chr12 50924220 50924327 -92862128 + L1MC/D LINE L1 5040 5141 -1005 458 253 178 8 chr12 50924408 50924661 -92861794 + L1MC/D LINE L1 5254 5549 -2259 395 254 12 73 chr12 50924708 50924751 -92861704 + L1MC/D LINE L1 5654 5698 -2110 1635 131 54 34 chr12 50924751 50925048 -92861407 + AluJo SINE Alu 1 303 -9 395 254 12 73 chr12 50925048 50925169 -92861286 + L1MC/D LINE L1 5698 5808 -2000 489 323 169 30 chr12 50925194 50925899 -92860556 - L2 LINE L2 -512 2802 2000 219 293 61 0 chr12 50926554 50926636 -92859819 + L2 LINE L2 2979 3065 -248 347 264 0 11 chr12 50926801 50926888 -92859567 + L2 LINE L2 3228 3313 0 2010 113 24 3 chr12 50927470 50927763 -92858692 - AluSq SINE Alu -14 299 1 875 273 118 41 chr12 50927794 50928346 -92858109 + L2 LINE L2 2614 3216 -97 2271 85 3 0 chr12 50928346 50928651 -92857804 - AluY SINE Alu -5 306 1 875 273 118 41 chr12 50928651 50928743 -92857712 + L2 LINE L2 3216 3300 -13 195 100 0 0 chr12 50928743 50928773 -92857682 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 951 241 92 58 chr12 50929775 50930233 -92856222 - L1MCa LINE L1 -4881 1545 1059 2313 107 0 0 chr12 50930233 50930541 -92855914 - AluSc SINE Alu 0 309 2 951 241 92 58 chr12 50930541 50930689 -92855766 - L1MCa LINE L1 -5367 1059 918 593 227 11 0 chr12 50931162 50931338 -92855117 + (CATA)n Simple_repeat Simple_repeat 1 178 0 2184 75 7 0 chr12 50933481 50933786 -92852669 - AluY SINE Alu 0 307 1 2311 90 7 0 chr12 50938169 50938470 -92847985 + AluSc SINE Alu 1 303 -6 1092 273 134 14 chr12 50939436 50939875 -92846580 + L1MC/D LINE L1 56 547 -5849 * 2483 216 97 17 chr12 50939872 50940164 -92846291 + L1MC/D LINE L1 1561 1828 -4568 2096 160 24 3 chr12 50940164 50940501 -92845954 + MER2 DNA MER2_type 1 344 0 2483 216 97 17 chr12 50940501 50940665 -92845790 + L1MC/D LINE L1 1828 1977 -4419 2168 115 0 0 chr12 50940665 50940969 -92845486 + AluSg SINE Alu 5 308 -2 2030 125 6 6 chr12 50940971 50941283 -92845172 + AluSx SINE Alu 1 312 0 2483 216 97 17 chr12 50941283 50941573 -92844882 + L1MC/D LINE L1 1977 2371 -4025 700 107 0 29 chr12 50941573 50941676 -92844779 + U6 snRNA snRNA 1 100 -7 505 184 49 37 chr12 50941682 50941821 -92844634 + L1MC/D LINE L1 2318 2461 -3754 1954 118 20 16 chr12 50941821 50942127 -92844328 + AluSx SINE Alu 1 307 -5 505 184 49 37 chr12 50942127 50942150 -92844305 + L1MC/D LINE L1 2461 2482 -3733 691 213 8 0 chr12 50942162 50942284 -92844171 + FLAM_C SINE Alu 2 124 -19 277 209 151 6 chr12 50942286 50942465 -92843990 + L1MC/D LINE L1 2472 4632 -1583 1331 105 59 17 chr12 50942820 50943058 -92843397 - Tigger7 DNA MER2_type -1 2490 2243 2268 97 0 0 chr12 50943062 50943362 -92843093 + AluSx SINE Alu 1 300 -12 403 264 0 0 chr12 50943363 50943454 -92843001 + L1MC/D LINE L1 5275 5365 -850 344 182 60 35 chr12 50943456 50943569 -92842886 + L1MC/D LINE L1 5412 5521 -746 2237 72 7 7 chr12 50944171 50944478 -92841977 + AluY SINE Alu 1 307 -4 416 90 0 15 chr12 50944746 50944813 -92841642 + FLAM_A SINE Alu 71 136 -6 243 122 0 0 chr12 50944817 50944858 -92841597 + L1MA9 LINE L1 5324 5364 -970 330 196 76 33 chr12 50944860 50944952 -92841503 + MER66B LTR ERV1 297 392 -94 4228 179 30 22 chr12 50944958 50945386 -92841069 + L1MA9 LINE L1 5352 5775 -537 2068 167 36 0 chr12 50945386 50945722 -92840733 + MER7A DNA MER2_type 1 346 0 4228 179 30 22 chr12 50945722 50946209 -92840246 + L1MA9 LINE L1 5775 6274 -38 30 0 0 0 chr12 50946214 50946244 -92840211 + AT_rich Low_complexity Low_complexity 1 30 0 2141 107 3 0 chr12 50946246 50946536 -92839919 + AluSq SINE Alu 1 291 -22 1095 259 51 18 chr12 50946549 50946885 -92839570 + HAL1 LINE L1 1556 1902 -605 725 258 129 0 chr12 50950441 50950658 -92835797 + MIR SINE MIR 5 249 -13 576 301 66 5 chr12 50950880 50951076 -92835379 - MIR SINE MIR -5 257 50 234 265 47 14 chr12 50951126 50951219 -92835236 + MIR3 SINE MIR 89 154 -54 532 272 183 0 chr12 50951938 50952107 -92834348 + MIR SINE MIR 63 262 0 190 281 35 0 chr12 50952116 50952173 -92834282 + L2 LINE L2 3172 3230 -42 846 219 44 8 chr12 50953012 50953246 -92833209 + MIR SINE MIR 19 262 0 2010 90 7 17 chr12 50954223 50954513 -92831942 - AluSg SINE Alu -6 304 18 375 225 256 22 chr12 50954687 50954887 -92831568 + MIR SINE MIR 16 256 -6 323 216 31 52 chr12 50955037 50955134 -92831321 + MIR SINE MIR 160 254 -8 1882 123 0 36 chr12 50955138 50955439 -92831016 + AluSx SINE Alu 6 295 -17 2145 118 3 0 chr12 50958422 50958728 -92827727 + AluSg SINE Alu 1 307 -3 1260 269 54 27 chr12 50958765 50958785 -92827670 + L1ME3 LINE L1 5508 5526 -644 1778 163 7 7 chr12 50958785 50959092 -92827363 + AluSx SINE Alu 1 307 -5 1260 269 54 27 chr12 50959092 50959514 -92826941 + L1ME3 LINE L1 5526 5962 -208 264 61 0 0 chr12 50959550 50959583 -92826872 - THE1A LTR MaLR 0 355 323 273 288 58 43 chr12 50959590 50959729 -92826726 + L1ME3 LINE L1 5962 6102 -60 26 30 0 0 chr12 50962983 50963016 -92823439 + GC_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr12 50963612 50963634 -92822821 + AT_rich Low_complexity Low_complexity 1 22 0 2119 114 0 0 chr12 50963646 50963953 -92822502 - AluSx SINE Alu -5 307 1 705 209 58 23 chr12 50963956 50964128 -92822327 + MIR SINE MIR 81 258 -4 419 152 7 51 chr12 50964226 50964364 -92822091 + GA-rich Low_complexity Low_complexity 3 134 0 261 287 31 62 chr12 50964381 50964510 -92821945 - MIR SINE MIR -73 135 11 635 265 19 6 chr12 50964726 50964888 -92821567 - MIR SINE MIR -11 251 88 2085 121 3 0 chr12 50965301 50965607 -92820848 - AluSx SINE Alu -5 307 1 319 292 14 49 chr12 50966230 50966374 -92820081 + MIR SINE MIR 4 142 -120 2059 125 0 6 chr12 50966412 50966725 -92819730 + AluSx SINE Alu 1 311 -1 201 250 0 23 chr12 50966748 50966792 -92819663 + L2 LINE L2 3248 3290 -23 23 0 0 0 chr12 50967063 50967086 -92819369 + AT_rich Low_complexity Low_complexity 1 23 0 1575 77 0 64 chr12 50967086 50967209 -92819246 - L1PB1 LINE L1 -7 6144 6041 2153 88 7 3 chr12 50967209 50967503 -92818952 - AluY SINE Alu -16 295 1 1575 77 0 64 chr12 50967503 50967612 -92818843 - L1PB1 LINE L1 -110 6041 5927 2758 160 18 40 chr12 50967612 50968160 -92818295 - L1PA16 LINE L1 -12 6154 5618 1121 221 48 7 chr12 50968585 50968875 -92817580 - L1MEc LINE L1 -3456 2759 2458 387 41 0 0 chr12 50968879 50968928 -92817527 + (TG)n Simple_repeat Simple_repeat 2 50 0 1687 153 0 4 chr12 50968935 50969203 -92817252 - AluJb SINE Alu -45 267 1 22 35 0 0 chr12 50969226 50969255 -92817200 + AT_rich Low_complexity Low_complexity 1 29 0 1287 135 10 83 chr12 50969353 50969665 -92816790 + AluSg SINE Alu 1 289 -11 721 117 0 29 chr12 50969825 50969928 -92816527 - U6 snRNA snRNA -7 100 1 857 228 22 18 chr12 50969928 50970200 -92816255 - L1MEc LINE L1 -4025 2371 2099 1977 131 6 6 chr12 50970218 50970530 -92815925 - AluSx SINE Alu 0 312 1 2060 61 20 41 chr12 50970554 50970847 -92815608 - AluY SINE Alu -24 287 1 1804 139 3 65 chr12 50970851 50971041 -92815414 - AluSx SINE Alu -9 303 140 2128 119 0 0 chr12 50971041 50971335 -92815120 - AluSx SINE Alu -18 294 1 1804 139 3 65 chr12 50971335 50971467 -92814988 - AluSx SINE Alu -172 140 1 13279 146 30 19 chr12 50971467 50971613 -92814842 - L1PA15-16 LINE L1 -4686 2163 2020 2414 69 0 0 chr12 50971613 50971917 -92814538 - AluY SINE Alu -7 304 1 13279 146 30 19 chr12 50971917 50973908 -92812547 - L1PA15-16 LINE L1 -4829 2020 1 2157 124 0 0 chr12 50973911 50974217 -92812238 - AluSx SINE Alu -6 306 1 476 221 0 0 chr12 50974220 50974315 -92812140 - FLAM_A SINE Alu -10 132 38 1254 243 69 37 chr12 50974489 50974950 -92811505 + L1ME LINE L1 1341 1816 -4580 384 132 0 0 chr12 50974963 50975016 -92811439 + Alu SINE Alu 1 53 -255 321 185 0 0 chr12 50975004 50975058 -92811397 + FLAM SINE Alu 74 127 -6 * 1047 187 152 52 chr12 50975277 50975457 -92810998 + L1ME LINE L1 2040 2201 -4014 1956 125 0 11 chr12 50975457 50975782 -92810673 + AluSx SINE Alu 1 322 0 2159 105 0 0 chr12 50975790 50976075 -92810380 + AluSp SINE Alu 6 290 -23 2210 71 19 13 chr12 50976085 50976394 -92810061 + AluY SINE Alu 1 311 0 1047 187 152 52 chr12 50976394 50976744 -92809711 + L1ME LINE L1 2215 2528 -3687 2397 100 46 6 chr12 50976744 50977094 -92809361 + THE1B LTR MaLR 1 364 0 1047 187 152 52 chr12 50977094 50977114 -92809341 + L1ME LINE L1 2528 2545 -3670 2192 85 0 0 chr12 50977114 50977424 -92809031 + AluSg SINE Alu 1 310 0 1047 187 152 52 chr12 50977424 50977443 -92809012 + L1ME LINE L1 2545 2666 -3549 254 192 39 51 chr12 50977449 50977527 -92808928 + L1ME LINE L1 2729 2805 -3410 1072 224 5 5 chr12 50977527 50977741 -92808714 + MER58A DNA MER1_type 1 214 -10 363 269 35 0 chr12 50977749 50977890 -92808565 + L1ME LINE L1 2796 2941 -3274 1117 141 141 0 chr12 50977893 50978092 -92808363 - AluJb SINE Alu -8 304 78 1905 233 113 37 chr12 50978092 50978189 -92808266 + L1ME LINE L1 2933 3021 -3194 2380 73 0 6 chr12 50978189 50978502 -92807953 + AluY SINE Alu 1 311 0 1905 233 113 37 chr12 50978502 50979091 -92807364 + L1ME LINE L1 3021 3564 -2651 2302 92 0 0 chr12 50979091 50979396 -92807059 + AluSc SINE Alu 1 305 -4 2206 116 0 3 chr12 50979400 50979710 -92806745 + AluSx SINE Alu 3 311 -1 1905 233 113 37 chr12 50979710 50979744 -92806711 + L1ME LINE L1 3566 3714 -2501 2410 177 94 88 chr12 50979746 50980362 -92806093 + MLT1E2 LTR MaLR 1 622 -4 4682 202 53 61 chr12 50980370 50980424 -92806031 + L1ME LINE L1 3716 3769 -2446 2051 128 3 6 chr12 50980424 50980737 -92805718 + AluSx SINE Alu 1 312 0 4682 202 53 61 chr12 50980737 50980803 -92805652 + L1ME LINE L1 3769 3834 -2381 1865 142 3 25 chr12 50980803 50981120 -92805335 + AluJb SINE Alu 1 310 -2 4682 202 53 61 chr12 50981120 50981724 -92804731 + L1ME LINE L1 3834 4441 -1774 2149 108 0 0 chr12 50981724 50982020 -92804435 + AluSq SINE Alu 1 296 -17 4682 202 53 61 chr12 50982020 50982109 -92804346 + L1ME LINE L1 4441 4529 -1686 1677 150 16 32 chr12 50982109 50982422 -92804033 + AluJo SINE Alu 1 308 -4 4682 202 53 61 chr12 50982422 50983157 -92803298 + L1ME LINE L1 4529 5255 -960 909 195 74 9 chr12 50983163 50983378 -92803077 + L1ME1 LINE L1 4769 4997 -1149 2393 146 36 7 chr12 50983378 50983797 -92802658 + L1MB3 LINE L1 5651 6081 -102 892 102 0 22 chr12 50983810 50983947 -92802508 - FRAM SINE Alu 0 40 1 248 250 18 0 chr12 50985509 50985565 -92800890 + MIR SINE MIR 184 240 -22 200 333 18 0 chr12 50985532 50985589 -92800866 + L2 LINE L2 3252 3309 -4 * 2766 195 42 42 chr12 50985623 50985860 -92800595 + L1MC4 LINE L1 7324 7560 -482 2206 95 3 0 chr12 50985860 50986154 -92800301 + AluSc SINE Alu 1 295 -14 2766 195 42 42 chr12 50986154 50986635 -92799820 + L1MC4 LINE L1 7559 8042 0 1652 246 129 35 chr12 50986907 50987800 -92798655 + L2 LINE L2 2325 3294 -19 219 36 0 0 chr12 50987808 50987836 -92798619 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 275 158 53 0 chr12 50987878 50987935 -92798520 + L1ME3A LINE L1 6097 6156 -14 1283 210 133 11 chr12 50987938 50988305 -92798150 + L1ME LINE L1 5453 5864 -367 534 128 29 20 chr12 50988429 50988531 -92797924 + L1PA16 LINE L1 6052 6154 -12 1479 87 4 65 chr12 50988532 50988637 -92797818 + L1PB1 LINE L1 5930 6015 -136 2167 85 7 3 chr12 50988637 50988931 -92797524 + AluY SINE Alu 1 295 -16 1479 87 4 65 chr12 50988931 50989054 -92797401 + L1PB1 LINE L1 6015 6144 -7 23 0 0 0 chr12 50989054 50989077 -92797378 + AT_rich Low_complexity Low_complexity 1 23 0 3117 177 104 52 chr12 50989097 50989299 -92797156 + L1ME1 LINE L1 5152 5342 -992 1625 184 3 7 chr12 50989299 50989603 -92796852 + AluSg SINE Alu 1 303 -7 3117 177 104 52 chr12 50989603 50989824 -92796631 + L1ME1 LINE L1 5342 5550 -784 2255 75 7 0 chr12 50989824 50990118 -92796337 - AluSx SINE Alu -16 296 1 3117 177 104 52 chr12 50990118 50990668 -92795787 + L1ME1 LINE L1 5550 6331 -3 1776 159 3 0 chr12 50991051 50991340 -92795115 + AluJb SINE Alu 1 290 -22 593 248 106 0 chr12 50991513 50991711 -92794744 + HAL1 LINE L1 8 226 -2281 2742 212 144 44 chr12 50991742 50991853 -92794602 + HAL1 LINE L1 636 735 -1772 2203 98 0 0 chr12 50991853 50992148 -92794307 + AluSc SINE Alu 1 295 -14 2742 212 144 44 chr12 50992148 50993053 -92793402 + HAL1 LINE L1 735 1753 -754 2189 101 3 16 chr12 50993456 50993764 -92792691 - AluSx SINE Alu -4 308 5 1055 83 0 0 chr12 50994175 50994307 -92792148 + AluY SINE Alu 1 132 -179 806 278 36 36 chr12 50994820 50994888 -92791567 + HAL1 LINE L1 1720 1787 -720 1809 131 40 0 chr12 50994888 50995185 -92791270 + AluSq SINE Alu 1 309 -4 806 278 36 36 chr12 50995185 50995479 -92790976 + HAL1 LINE L1 1786 2082 -425 493 195 281 18 chr12 50995484 50995648 -92790807 - MER115 DNA AcHobo -420 273 67 512 255 57 0 chr12 50995648 50995789 -92790666 + HAL1 LINE L1 2338 2486 -21 22 35 0 0 chr12 50996025 50996054 -92790401 + GC_rich Low_complexity Low_complexity 1 29 0 1085 156 19 5 chr12 50996099 50996310 -92790145 + AluJo SINE Alu 85 298 -14 277 241 0 135 chr12 50996804 50996938 -92789517 + L2 LINE L2 3197 3312 -1 215 279 16 31 chr12 50997217 50997346 -92789109 + C-rich Low_complexity Low_complexity 6 132 0 2499 73 0 3 chr12 50998055 50998356 -92788099 - AluSq SINE Alu -13 300 1 2151 127 13 3 chr12 50998358 50998665 -92787790 - AluJb SINE Alu -2 310 1 2522 74 0 0 chr12 50998680 50998977 -92787478 - AluY SINE Alu -14 297 1 2226 83 23 23 chr12 50998985 50999285 -92787170 - AluY SINE Alu -11 300 1 1504 168 15 30 chr12 51004149 51004417 -92782038 + AluJo SINE Alu 39 302 -10 212 355 68 52 chr12 51004804 51005055 -92781400 + L3b LINE CR1 1110 1364 -219 537 257 176 0 chr12 51005107 51005329 -92781126 + MIR SINE MIR 2 262 0 1984 156 0 0 chr12 51007153 51007499 -92778956 + AluSx SINE Alu 1 346 0 187 305 110 8 chr12 51009551 51009669 -92776786 + MIR SINE MIR 117 246 -16 367 292 193 16 chr12 51011902 51012094 -92774361 - MIR SINE MIR -30 232 7 1240 189 62 51 chr12 51014548 51014646 -92771809 + AluJb SINE Alu 35 130 -182 1897 137 62 0 chr12 51014646 51014938 -92771517 + AluSx SINE Alu 1 310 -2 1240 189 62 51 chr12 51014938 51015114 -92771341 + AluJb SINE Alu 130 312 0 1928 140 7 26 chr12 51017553 51017861 -92768594 + AluJo SINE Alu 2 303 -9 324 290 54 11 chr12 51019319 51019412 -92767043 + L3b LINE CR1 1472 1568 -15 259 272 169 29 chr12 51021108 51021244 -92765211 - MER5A DNA MER1_type 0 189 35 212 86 29 0 chr12 51021633 51021668 -92764787 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 2261 110 7 0 chr12 51021813 51022113 -92764342 - AluSx SINE Alu -10 302 1 447 307 57 5 chr12 51023234 51023426 -92763029 + L2 LINE L2 2776 2977 -337 181 320 58 48 chr12 51023472 51023575 -92762880 - L2 LINE L2 -658 2656 2553 206 167 0 0 chr12 51023722 51023758 -92762697 - L2 LINE L2 -17 3296 3261 981 209 0 0 chr12 51023800 51023972 -92762483 + AluJo SINE Alu 120 291 -21 1381 195 79 11 chr12 51024297 51024574 -92761881 + AluJo SINE Alu 1 296 -16 24 32 0 0 chr12 51025276 51025307 -92761148 + AT_rich Low_complexity Low_complexity 1 31 0 1578 128 92 4 chr12 51025657 51025907 -92760548 + AluJb SINE Alu 31 302 -10 1000 239 50 0 chr12 51025909 51026131 -92760324 + MIR SINE MIR 28 260 -2 2411 107 0 3 chr12 51026595 51026905 -92759550 + AluSx SINE Alu 1 309 -3 1531 169 105 4 chr12 51026914 51027181 -92759274 + AluJo SINE Alu 1 294 -18 247 221 162 7 chr12 51027335 51027471 -92758984 - L1ME4a LINE L1 -101 6020 5864 741 308 127 40 chr12 51027509 51028155 -92758300 - L2 LINE L2 -13 3259 2564 1558 146 48 15 chr12 51028209 51028477 -92757978 - AluJb SINE Alu -1 311 35 689 295 25 37 chr12 51029096 51029340 -92757115 + MIR SINE MIR 9 249 -13 408 296 83 48 chr12 51032467 51032697 -92753758 + L2 LINE L2 3057 3294 -19 1314 307 63 23 chr12 51032697 51033172 -92753283 - MLT1K LTR MaLR -71 517 24 21 82 0 0 chr12 51033830 51033879 -92752576 + GC_rich Low_complexity Low_complexity 1 49 0 321 227 0 0 chr12 51035194 51035304 -92751151 + C-rich Low_complexity Low_complexity 1 110 0 227 246 25 51 chr12 51035336 51035454 -92751001 + C-rich Low_complexity Low_complexity 6 120 0 1753 194 20 0 chr12 51036031 51036335 -92750120 - AluJb SINE Alu 0 312 3 280 257 186 0 chr12 51036501 51036641 -92749814 + L2 LINE L2 3130 3295 -18 271 311 106 8 chr12 51037317 51037449 -92749006 - MIR SINE MIR -110 152 8 2214 80 42 3 chr12 51037719 51038005 -92748450 - AluY SINE Alu -14 297 1 322 322 166 20 chr12 51038032 51038101 -92748354 + MIR SINE MIR 23 81 -181 1852 150 4 4 chr12 51038101 51038374 -92748081 - AluJo SINE Alu -39 273 1 322 322 166 20 chr12 51038374 51038503 -92747952 + MIR SINE MIR 81 250 -12 2524 74 0 0 chr12 51038589 51038886 -92747569 - AluY SINE Alu -14 297 1 337 277 12 0 chr12 51038909 51038992 -92747463 - FRAM SINE Alu -51 115 32 711 277 92 10 chr12 51039148 51039451 -92747004 - L1MC4a LINE L1 -1854 5954 5627 581 302 134 17 chr12 51039482 51039773 -92746682 - L2 LINE L2 -1 3312 2988 1813 170 7 7 chr12 51042632 51042938 -92743517 - AluJo SINE Alu -6 306 1 392 345 37 10 chr12 51042953 51043024 -92743431 - L1ME4a LINE L1 -217 5904 5836 2227 98 10 7 chr12 51043024 51043320 -92743135 - AluSx SINE Alu -15 297 1 392 345 37 10 chr12 51043320 51043544 -92742911 - L1ME4a LINE L1 -285 5836 5601 1008 257 94 31 chr12 51043623 51043855 -92742600 - L1ME4a LINE L1 -1 6120 5904 2429 85 10 7 chr12 51043855 51044160 -92742295 - AluSx SINE Alu -6 306 1 1008 257 94 31 chr12 51044160 51044222 -92742233 - L1ME4a LINE L1 -217 5904 5847 2150 146 0 0 chr12 51044222 51044524 -92741931 - AluSx SINE Alu -9 303 2 1008 257 94 31 chr12 51044524 51044547 -92741908 - L1ME4a LINE L1 -274 5847 5827 2570 60 3 0 chr12 51044547 51044846 -92741609 - AluY SINE Alu -11 300 1 1008 257 94 31 chr12 51044846 51045214 -92741241 - L1ME4a LINE L1 -294 5827 5361 393 246 164 30 chr12 51046794 51046928 -92739527 + MIR SINE MIR 95 246 -16 2381 103 3 0 chr12 51046944 51047254 -92739201 - AluSx SINE Alu -1 311 1 564 290 63 29 chr12 51047402 51047640 -92738815 + MIR SINE MIR 15 260 -2 762 314 132 21 chr12 51048590 51049068 -92737387 + L2 LINE L2 2402 2932 -382 397 266 78 0 chr12 51049262 51049390 -92737065 - MER104 DNA Tc2 -39 141 4 299 239 22 101 chr12 51049402 51049540 -92736915 + L2 LINE L2 3185 3311 -2 286 295 242 0 chr12 51049606 51049755 -92736700 - MIR3 SINE MIR -3 205 21 363 204 16 70 chr12 51051089 51051275 -92735180 + (CACCC)n Simple_repeat Simple_repeat 4 179 0 200 100 25 0 chr12 51051305 51051345 -92735110 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 271 270 17 39 chr12 51051389 51051567 -92734888 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 195 69 0 0 chr12 51051602 51051631 -92734824 + (C)n Simple_repeat Simple_repeat 1 29 0 1936 108 12 0 chr12 51052010 51052268 -92734187 + AluSx SINE Alu 37 297 -15 2227 177 107 2 chr12 51052680 51053137 -92733318 - MLT1D LTR MaLR 0 505 1 2545 77 0 3 chr12 51053817 51054128 -92732327 + AluY SINE Alu 1 310 -1 238 184 20 0 chr12 51054154 51054203 -92732252 + L2 LINE L2 2201 2250 -1064 2069 251 49 39 chr12 51054348 51054965 -92731490 + L2 LINE L2 2266 2888 -426 207 0 0 0 chr12 51058773 51058796 -92727659 + (A)n Simple_repeat Simple_repeat 1 23 0 438 299 97 48 chr12 51060830 51061161 -92725294 + Charlie8 DNA MER1_type 117 463 -1954 592 255 35 0 chr12 51061180 51061321 -92725134 + MIR SINE MIR 1 146 -116 30 0 0 0 chr12 51061482 51061512 -92724943 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 51063134 51063155 -92723300 + AT_rich Low_complexity Low_complexity 1 21 0 234 333 0 0 chr12 51064330 51064417 -92722038 + G-rich Low_complexity Low_complexity 1 87 0 297 212 46 84 chr12 51064783 51064900 -92721555 + MIR3 SINE MIR 81 181 -27 2492 61 17 0 chr12 51065194 51065489 -92720966 + AluSp SINE Alu 1 300 -13 751 208 16 27 chr12 51066312 51066495 -92719960 + MIR SINE MIR 78 258 -4 2353 98 0 3 chr12 51066774 51067079 -92719376 - AluY SINE Alu -7 304 1 2372 93 3 0 chr12 51067081 51067372 -92719083 - AluSg SINE Alu -17 293 2 1989 166 3 0 chr12 51067373 51067675 -92718780 - AluJb SINE Alu -5 307 5 217 241 193 0 chr12 51067973 51068056 -92718399 - MIR SINE MIR -3 259 161 378 336 41 27 chr12 51068193 51068413 -92718042 + L2 LINE L2 2850 3072 -241 2009 114 21 14 chr12 51068733 51069022 -92717433 + AluSx SINE Alu 15 305 -7 647 213 8 0 chr12 51069059 51069181 -92717274 + FLAM_C SINE Alu 2 124 -19 306 244 43 9 chr12 51069183 51069298 -92717157 + L1M4 LINE L1 2403 2521 -3625 252 186 70 23 chr12 51069276 51069362 -92717093 + L1M4 LINE L1 4474 4563 -1583 * 1360 96 59 21 chr12 51069717 51069956 -92716499 - Tigger7 DNA MER2_type -1 2490 2243 2244 98 7 0 chr12 51069960 51070247 -92716208 + AluSx SINE Alu 1 289 -23 210 284 47 83 chr12 51070353 51070522 -92715933 + L2 LINE L2 3014 3176 -96 230 281 108 30 chr12 51071573 51071740 -92714715 - L3b LINE CR1 -125 1458 1279 425 342 91 48 chr12 51072179 51073135 -92713320 - L2 LINE L2 -39 3233 2226 219 318 23 53 chr12 51073341 51073473 -92712982 - MIR3 SINE MIR -16 192 65 560 253 100 6 chr12 51073630 51073800 -92712655 + MER8 DNA MER2_type 53 238 -1 688 171 82 0 chr12 51073800 51073946 -92712509 + MER2 DNA MER2_type 188 345 0 306 262 84 84 chr12 51074764 51074955 -92711500 - MER20 DNA MER1_type -27 192 2 308 356 64 43 chr12 51075000 51075233 -92711222 - MIR SINE MIR -4 258 21 484 209 26 9 chr12 51075967 51076082 -92710373 + AluJb SINE Alu 180 296 -16 321 325 97 53 chr12 51077214 51077442 -92709013 + L2 LINE L2 2560 2797 -517 1165 264 62 3 chr12 51077736 51078028 -92708427 + MLT1J LTR MaLR 3 311 -200 216 0 0 0 chr12 51078130 51078154 -92708301 + (T)n Simple_repeat Simple_repeat 1 24 0 771 113 8 8 chr12 51132794 51132918 -92653537 - HERVE LTR ERV1 -7428 385 262 * 2339 147 5 25 chr12 51132911 51133306 -92653149 - HERVE LTR ERV1 -6509 387 1 1880 185 68 32 chr12 51133306 51133749 -92652706 - LTR2B LTR ERV1 0 490 32 207 0 0 0 chr12 51134111 51134134 -92652321 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2242 118 0 0 chr12 51134219 51134515 -92651940 - AluSg SINE Alu -13 297 2 2218 88 37 3 chr12 51134565 51134859 -92651596 - AluSp SINE Alu -9 304 1 181 331 85 87 chr12 51134914 51135304 -92651151 + L2 LINE L2 2824 3212 -60 2037 104 6 60 chr12 51135363 51135679 -92650776 + AluSx SINE Alu 1 299 -13 267 211 35 0 chr12 51136157 51136214 -92650241 + MIR SINE MIR 195 253 -9 294 283 58 25 chr12 51136608 51136728 -92649727 + MIR SINE MIR 24 147 -61 355 274 36 0 chr12 51137499 51137583 -92648872 + L2 LINE L2 3185 3271 -1 2216 144 5 32 chr12 51137731 51138106 -92648349 + MLT1A1 LTR MaLR 1 365 0 340 258 192 24 chr12 51138167 51138334 -92648121 + L1MC4a LINE L1 5878 6072 -1736 1952 134 35 3 chr12 51138334 51138624 -92647831 - AluSx SINE Alu -12 300 2 1393 162 38 4 chr12 51140215 51140450 -92646005 - AluJb SINE Alu -10 302 60 1857 156 7 0 chr12 51140457 51140752 -92645703 - AluSx SINE Alu -2 310 14 260 340 30 30 chr12 51141004 51141104 -92645351 + MIR3 SINE MIR 4 103 -105 321 287 34 42 chr12 51141170 51141295 -92645160 - MIR SINE MIR -64 144 41 180 184 69 81 chr12 51141329 51141416 -92645039 + MIR SINE MIR 131 216 -46 22 0 0 0 chr12 51141417 51141439 -92645016 + AT_rich Low_complexity Low_complexity 1 22 0 1501 183 43 62 chr12 51142581 51142674 -92643781 + MER47A DNA MER2_type 1 94 -2229 2358 95 0 3 chr12 51142674 51142968 -92643487 + AluSx SINE Alu 1 293 -19 1501 183 43 62 chr12 51142968 51143246 -92643209 + MER47A DNA MER2_type 94 365 -1 476 244 104 0 chr12 51144219 51144354 -92642101 + MIR3 SINE MIR 58 206 -2 237 234 43 64 chr12 51144783 51144877 -92641578 - L3b LINE CR1 -154 1429 1338 578 207 80 22 chr12 51145754 51145940 -92640515 - MIR3 SINE MIR -2 206 8 2299 114 0 7 chr12 51147311 51147619 -92638836 - AluSg SINE Alu -4 306 1 2823 185 19 43 chr12 51148131 51148331 -92638124 - MER69 DNA AcHobo -11 2515 2312 2317 61 17 3 chr12 51148331 51148624 -92637831 + AluY SINE Alu 1 297 -14 2823 185 19 43 chr12 51148624 51149115 -92637340 - MER69 DNA AcHobo -214 2312 1841 2694 224 88 34 chr12 51149112 51149403 -92637052 - MER69 DNA AcHobo -1772 754 480 * 2451 39 13 0 chr12 51149403 51149709 -92636746 - AluY SINE Alu -1 310 1 2694 224 88 34 chr12 51149709 51150132 -92636323 - MER69 DNA AcHobo -2046 480 1 1956 135 3 0 chr12 51150438 51150726 -92635729 + AluSq SINE Alu 1 289 -24 210 37 0 0 chr12 51150726 51150753 -92635702 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 263 189 37 17 chr12 51150997 51151067 -92635388 - MIR SINE MIR -62 146 89 784 233 134 62 chr12 51151074 51151491 -92634964 - MLT1J2 LTR MaLR 0 450 4 456 231 23 23 chr12 51151925 51152055 -92634400 - LTR67 LTR ERVL 0 557 428 644 229 19 88 chr12 51152100 51152305 -92634150 + MLT1J LTR MaLR 224 414 -97 4138 75 30 8 chr12 51152828 51153727 -92632728 + Harlequin LTR ERV1 415 1410 -5486 * 29850 62 13 4 chr12 51153710 51157442 -92629013 + Harlequin LTR ERV1 1799 5565 -1331 2839 128 9 12 chr12 51157423 51157844 -92628611 + Harlequin LTR ERV1 6477 6896 0 * 1695 176 140 34 chr12 51157863 51158278 -92628177 + LTR2B LTR ERV1 32 490 0 2143 101 3 3 chr12 51158315 51158612 -92627843 - AluSx SINE Alu -15 297 1 277 167 21 0 chr12 51158798 51158846 -92627609 - MER69 DNA AcHobo -127 50 2 537 271 28 17 chr12 51160643 51160820 -92625635 - AluJb SINE Alu -132 180 2 1952 118 3 7 chr12 51160864 51161170 -92625285 - AluSg SINE Alu -5 305 1 1169 69 0 13 chr12 51161183 51161342 -92625113 - AluSg/x SINE Alu -7 303 147 1628 138 20 37 chr12 51161490 51161787 -92624668 - AluJb SINE Alu -19 293 2 1826 158 210 19 chr12 51161924 51162348 -92624107 - MLT1D LTR MaLR 0 505 1 272 254 173 96 chr12 51162932 51163204 -92623251 - L2 LINE L2 -798 2516 2212 2765 10 0 0 chr12 51163204 51163515 -92622940 - AluYa5 SINE Alu 0 311 1 272 254 173 96 chr12 51163515 51163577 -92622878 - L2 LINE L2 -1102 2212 2156 204 190 61 24 chr12 51163598 51163663 -92622792 + MER5B DNA MER1_type 9 64 -114 219 234 21 0 chr12 51163613 51163660 -92622795 - MER5A DNA MER1_type -13 176 129 25 51 0 0 chr12 51163701 51163740 -92622715 + AT_rich Low_complexity Low_complexity 1 39 0 263 54 90 0 chr12 51163772 51163829 -92622626 + L1MB3 LINE L1 6114 6180 0 1844 120 46 0 chr12 51165627 51165910 -92620545 - AluSx SINE Alu -16 296 1 715 239 18 22 chr12 51166068 51166290 -92620165 + L1ME3A LINE L1 5731 5951 -219 1542 186 29 0 chr12 51166436 51166733 -92619722 - AluJb SINE Alu 0 306 2 1203 142 46 14 chr12 51166735 51166953 -92619502 - AluJb SINE Alu -3 309 85 276 169 0 34 chr12 51166989 51167048 -92619407 + L1MC/D LINE L1 5769 5825 -1983 2378 41 3 0 chr12 51168007 51168302 -92618153 - AluY SINE Alu -15 296 1 333 281 74 0 chr12 51169195 51169316 -92617139 - MIR SINE MIR -54 208 79 356 311 48 19 chr12 51169360 51169463 -92616992 - MIR3 SINE MIR -33 175 70 720 294 106 8 chr12 51169594 51169829 -92616626 - MIR SINE MIR -2 260 3 2024 118 7 16 chr12 51170412 51170718 -92615737 - AluSx SINE Alu -9 303 1 1872 187 81 36 chr12 51170730 51171201 -92615254 - L1ME2 LINE L1 -21 6143 5652 1938 123 0 78 chr12 51171522 51171855 -92614600 - AluSx SINE Alu -5 307 1 1727 163 42 0 chr12 51172558 51172847 -92613608 - AluJo SINE Alu -11 301 1 669 317 167 52 chr12 51173257 51173972 -92612483 - L2 LINE L2 -539 2775 2144 1009 227 37 52 chr12 51173972 51174320 -92612135 - MER2 DNA MER2_type 0 344 2 669 317 167 52 chr12 51174320 51174416 -92612039 - L2 LINE L2 -1170 2144 2060 829 146 0 29 chr12 51174416 51174553 -92611902 - FLAM_C SINE Alu 0 133 1 669 317 167 52 chr12 51174553 51174630 -92611825 - L2 LINE L2 -1254 2060 1783 2100 117 10 0 chr12 51174630 51174937 -92611518 + AluSx SINE Alu 1 310 -2 21 71 0 0 chr12 51175032 51175074 -92611381 + AT_rich Low_complexity Low_complexity 1 42 0 1732 183 7 7 chr12 51175210 51175516 -92610939 - AluJb SINE Alu -6 306 1 2014 96 0 27 chr12 51175553 51175854 -92610601 - AluSg SINE Alu -2 308 16 321 226 48 0 chr12 51175854 51175916 -92610539 - Tigger3(Golem) DNA MER2_type -2964 65 1 623 205 110 13 chr12 51175919 51176068 -92610387 - MIR SINE MIR -65 143 35 313 327 63 13 chr12 51176066 51176225 -92610230 + L2 LINE L2 2450 2616 -698 * 295 234 95 22 chr12 51176239 51176376 -92610079 - L1MC5 LINE L1 -30 7931 7785 1705 126 53 43 chr12 51176691 51176862 -92609593 - AluSg SINE Alu -5 305 128 2221 76 0 13 chr12 51176862 51177166 -92609289 - AluY SINE Alu -11 300 1 1705 126 53 43 chr12 51177166 51177296 -92609159 - AluSg SINE Alu -182 128 1 283 195 79 85 chr12 51177541 51177609 -92608846 - L1MC5 LINE L1 -181 7780 7713 2241 79 7 0 chr12 51177609 51177912 -92608543 - AluSx SINE Alu -7 305 1 283 195 79 85 chr12 51177912 51178007 -92608448 - L1MC5 LINE L1 -248 7713 7618 1752 205 131 28 chr12 51178013 51178486 -92607969 - MLT1F LTR MaLR -7 535 14 2246 107 0 0 chr12 51178548 51178857 -92607598 - AluSx SINE Alu -3 309 1 401 157 29 39 chr12 51178864 51178966 -92607489 - L1MC5 LINE L1 -384 7577 7477 379 209 96 26 chr12 51179028 51179143 -92607312 - L1MA8 LINE L1 0 6291 6169 1383 161 78 4 chr12 51179176 51179418 -92607037 - AluJb SINE Alu -52 260 1 2161 111 10 0 chr12 51179461 51179768 -92606687 + AluSx SINE Alu 1 310 -2 747 178 0 15 chr12 51180604 51180739 -92605716 + AluJo SINE Alu 1 133 -169 689 120 37 0 chr12 51180740 51180848 -92605607 + AluJo SINE Alu 187 298 -14 280 252 155 0 chr12 51181087 51181190 -92605265 - L2 LINE L2 -18 3254 3136 294 263 121 20 chr12 51181219 51181318 -92605137 - L2 LINE L2 -274 3039 2931 264 205 141 13 chr12 51181431 51181509 -92604946 - MIR SINE MIR -83 179 92 379 228 89 10 chr12 51181813 51181914 -92604541 + MIR SINE MIR 106 214 -48 252 0 0 0 chr12 51182260 51182288 -92604167 + (TG)n Simple_repeat Simple_repeat 2 29 0 811 179 6 19 chr12 51182353 51182515 -92603940 - FRAM SINE Alu -16 160 1 212 225 0 0 chr12 51185187 51185227 -92601228 + G-rich Low_complexity Low_complexity 1 40 0 331 236 27 100 chr12 51185355 51185465 -92600990 + MIR SINE MIR 31 132 -76 1815 176 170 20 chr12 51185489 51185937 -92600518 + Charlie1b DNA MER1_type 1 515 -8 728 199 14 27 chr12 51185951 51186097 -92600358 + MER3 DNA MER1_type 1 144 -65 804 155 24 60 chr12 51186644 51186812 -92599643 + AluJo SINE Alu 140 301 -1 181 259 106 12 chr12 51186953 51187038 -92599417 + L2 LINE L2 1901 1993 -1321 1873 181 64 48 chr12 51187044 51187393 -92599062 - L1MB8 LINE L1 0 6178 5817 2208 93 13 0 chr12 51187393 51187693 -92598762 - AluSq SINE Alu -9 304 1 1873 181 64 48 chr12 51187693 51187825 -92598630 - L1MB8 LINE L1 -361 5817 5689 1099 182 14 19 chr12 51187825 51188034 -92598421 + MER2 DNA MER2_type 2 209 -136 25 31 0 0 chr12 51188035 51188067 -92598388 + AT_rich Low_complexity Low_complexity 1 32 0 2168 146 25 72 chr12 51188129 51188531 -92597924 - L1MB8 LINE L1 -490 5688 5269 2173 119 0 0 chr12 51188531 51188841 -92597614 - AluSx SINE Alu -2 310 1 1251 227 65 11 chr12 51188845 51189122 -92597333 - AluJo SINE Alu -10 292 1 2168 146 25 72 chr12 51189122 51189175 -92597280 - L1MB8 LINE L1 -912 5266 5236 180 0 0 0 chr12 51189175 51189195 -92597260 + (TA)n Simple_repeat Simple_repeat 2 21 0 2168 146 25 72 chr12 51189195 51189213 -92597242 - L1MB8 LINE L1 -942 5236 5219 400 189 0 0 chr12 51189313 51189387 -92597068 + AluSp/q SINE Alu 226 299 -4 4665 132 60 29 chr12 51189409 51190303 -92596152 + L1MA6 LINE L1 5374 6295 -5 2265 90 3 0 chr12 51190305 51190606 -92595849 + AluY SINE Alu 1 302 -9 2214 113 0 0 chr12 51190615 51190924 -92595531 + AluSc SINE Alu 1 309 0 831 209 15 40 chr12 51190934 51190950 -92595505 + AluJo SINE Alu 117 132 -180 1585 166 7 17 chr12 51190950 51191086 -92595369 + AluJo SINE Alu 1 137 -175 1966 108 42 3 chr12 51191086 51191374 -92595081 + AluSx SINE Alu 1 299 -13 1585 166 7 17 chr12 51191374 51191539 -92594916 + AluJo SINE Alu 137 299 -13 831 209 15 40 chr12 51191539 51191723 -92594732 + AluJo SINE Alu 132 312 0 1902 128 10 13 chr12 51191800 51192112 -92594343 - AluSx SINE Alu -1 311 1 295 238 187 79 chr12 51192141 51192390 -92594065 - L1MC4a LINE L1 -408 5713 5492 1695 185 0 3 chr12 51192390 51192688 -92593767 + AluJo SINE Alu 3 299 -13 295 238 187 79 chr12 51192688 51192729 -92593726 - L1MC4a LINE L1 -629 5492 5561 1572 163 21 0 chr12 51192729 51193017 -92593438 - AluJb SINE Alu -18 294 1 295 238 187 79 chr12 51193017 51193147 -92593308 - L1MC4a LINE L1 -559 5562 5447 2182 229 147 19 chr12 51193147 51193883 -92592572 - L2 LINE L2 -502 2812 1922 866 187 0 6 chr12 51193883 51194049 -92592406 + FRAM SINE Alu 1 164 -12 549 180 172 0 chr12 51194056 51194178 -92592277 - L2 LINE L2 -1390 1924 1782 844 149 45 13 chr12 51194181 51194335 -92592120 + FRAM SINE Alu 6 164 -12 399 160 0 80 chr12 51194380 51194455 -92592000 + FRAM/FAM SINE Alu 14 82 -93 2172 102 0 16 chr12 51194495 51194799 -92591656 - AluSx SINE Alu -13 299 1 984 129 14 0 chr12 51194969 51195116 -92591339 - AluSg/x SINE Alu -20 290 142 1174 205 80 3 chr12 51195156 51195975 -92590480 - L1MC4 LINE L1 -149 7893 6725 722 163 7 37 chr12 51196013 51196148 -92590307 + FLAM_A SINE Alu 3 133 0 2037 106 7 0 chr12 51196202 51196486 -92589969 + AluSc SINE Alu 1 286 -23 767 114 20 20 chr12 51196486 51196635 -92589820 + GA-rich Low_complexity Low_complexity 1 149 0 1612 228 179 15 chr12 51196635 51197156 -92589299 - L2 LINE L2 -1668 1646 1041 908 163 0 0 chr12 51197156 51197303 -92589152 - FRAM SINE Alu -13 163 17 503 269 30 55 chr12 51197303 51197504 -92588951 - L2 LINE L2 -2281 1033 838 2473 139 20 47 chr12 51197518 51197731 -92588724 + MLT1C LTR MaLR 1 218 -249 2291 112 83 9 chr12 51197731 51198080 -92588375 - THE1C LTR MaLR 0 375 1 2473 139 20 47 chr12 51198080 51198342 -92588113 + MLT1C LTR MaLR 218 467 0 1363 241 157 77 chr12 51198342 51198475 -92587980 - L2 LINE L2 -2476 838 717 1954 137 7 3 chr12 51198475 51198767 -92587688 + AluJb SINE Alu 1 293 -19 2100 127 7 0 chr12 51198774 51199066 -92587389 + AluSq SINE Alu 7 300 -13 1363 241 157 77 chr12 51199066 51199550 -92586905 - L2 LINE L2 -2602 712 163 897 277 34 0 chr12 51199959 51200194 -92586261 - MIR SINE MIR -6 256 14 2244 132 0 0 chr12 51200200 51200511 -92585944 + AluSx SINE Alu 1 311 -1 815 111 0 0 chr12 51200992 51201100 -92585355 + AluJb SINE Alu 1 108 -204 341 333 179 10 chr12 51201588 51201789 -92584666 - L2 LINE L2 -29 3243 3009 2220 94 20 3 chr12 51201790 51202087 -92584368 + AluSx SINE Alu 1 302 -10 312 322 14 35 chr12 51202510 51202653 -92583802 - L2 LINE L2 -676 2638 2499 1715 183 7 68 chr12 51202653 51202838 -92583617 - L1MD2 LINE L1 -495 5864 5669 2252 105 17 0 chr12 51202838 51203132 -92583323 - AluSx SINE Alu -13 299 1 1715 183 7 68 chr12 51203132 51203479 -92582976 - L1MD2 LINE L1 -690 5669 5392 1106 147 5 42 chr12 51203481 51203671 -92582784 - AluJb SINE Alu -8 304 122 287 120 20 0 chr12 51203671 51203721 -92582734 - L1MD2 LINE L1 -2389 5396 5346 2552 75 0 0 chr12 51203772 51204078 -92582377 + AluY SINE Alu 1 306 -5 1702 95 0 58 chr12 51204090 51204333 -92582122 + AluSq SINE Alu 1 229 -84 240 35 0 0 chr12 51204345 51204374 -92582081 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 226 338 55 0 chr12 51204386 51204531 -92581924 + L2 LINE L2 2238 2390 -924 192 308 31 0 chr12 51204537 51204602 -92581853 - MIR SINE MIR -3 259 193 982 164 0 18 chr12 51204608 51204779 -92581676 - Tigger3(Golem) DNA MER2_type -55 2974 2807 2363 82 0 3 chr12 51204899 51205191 -92581264 - AluSx SINE Alu -1 311 21 597 256 44 66 chr12 51205279 51205506 -92580949 - MIR SINE MIR 0 262 41 189 107 0 0 chr12 51205596 51205624 -92580831 + (GAA)n Simple_repeat Simple_repeat 3 30 0 2169 118 0 10 chr12 51205659 51205965 -92580490 - AluSx SINE Alu -9 303 1 264 206 32 0 chr12 51206099 51206162 -92580293 - AluJ/monomer SINE Alu 0 302 238 1711 180 4 0 chr12 51206164 51206436 -92580019 - AluJo SINE Alu -39 273 1 2199 112 0 10 chr12 51206724 51207029 -92579426 - AluSg SINE Alu -8 302 1 228 35 0 0 chr12 51207032 51207061 -92579394 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 223 254 127 14 chr12 51207518 51207589 -92578866 - MER91C DNA MER1_type -15 125 47 228 164 0 66 chr12 51208069 51208130 -92578325 + HsTC2 DNA Tc2 2 58 -1840 392 176 68 0 chr12 51208166 51208240 -92578215 - Tigger5 DNA MER2_type 0 2323 2245 2214 120 0 22 chr12 51208245 51208561 -92577894 - AluSx SINE Alu -3 309 1 324 197 14 14 chr12 51208568 51208639 -92577816 + Tigger5 DNA MER2_type 2247 2317 -6 908 141 201 77 chr12 51210043 51210342 -92576113 + L1MC4 LINE L1 7704 8039 -3 2310 100 3 16 chr12 51210585 51210894 -92575561 - AluSx SINE Alu -7 305 1 515 165 44 0 chr12 51212663 51212754 -92573701 - MER82 DNA MER2_type 0 653 559 268 95 0 0 chr12 51212751 51212793 -92573662 - Alu SINE Alu -4 298 257 * 887 213 50 15 chr12 51212787 51212989 -92573466 - MER82 DNA MER2_type -80 573 365 675 223 0 0 chr12 51212991 51213112 -92573343 - FLAM_A SINE Alu -21 121 1 1755 183 35 14 chr12 51213113 51213479 -92572976 - MER82 DNA MER2_type -278 375 2 511 228 51 13 chr12 51213591 51213749 -92572706 - L1ME4a LINE L1 -2 6119 5956 2347 81 7 3 chr12 51213774 51214072 -92572383 - AluSp SINE Alu -4 309 11 2416 102 0 0 chr12 51214653 51214958 -92571497 - AluY SINE Alu -6 305 1 2210 114 0 10 chr12 51214959 51215258 -92571197 - AluSc SINE Alu -12 297 2 1645 166 36 14 chr12 51215350 51215628 -92570827 - AluJo SINE Alu -28 284 1 228 67 0 0 chr12 51218834 51218864 -92567591 + (A)n Simple_repeat Simple_repeat 1 30 0 1753 117 18 71 chr12 51219468 51219749 -92566706 + AluSg SINE Alu 1 266 -44 1999 95 20 14 chr12 51219759 51220054 -92566401 + AluSx SINE Alu 1 297 -15 984 355 15 98 chr12 51220131 51220458 -92565997 - AluJb SINE Alu -2 300 1 1558 171 97 4 chr12 51220473 51220742 -92565713 + AluJo SINE Alu 1 294 -18 361 191 15 0 chr12 51220749 51220817 -92565638 - MER5A DNA MER1_type -80 109 41 300 338 119 45 chr12 51220834 51221256 -92565199 + L2 LINE L2 2780 3232 -40 216 268 18 0 chr12 51221420 51221476 -92564979 + CT-rich Low_complexity Low_complexity 4 60 0 3637 85 31 45 chr12 51221635 51222213 -92564242 - L1MA3 LINE L1 -9 6296 5727 2199 103 7 7 chr12 51222213 51222515 -92563940 - AluSx SINE Alu -8 304 3 314 99 0 4 chr12 51222569 51222782 -92563673 + AluY SINE Alu 1 299 -2 2415 82 0 10 chr12 51222941 51223245 -92563210 - AluY SINE Alu -10 301 1 614 120 240 0 chr12 51223278 51223378 -92563077 + FLAM_C SINE Alu 2 125 -18 245 289 58 39 chr12 51224622 51224726 -92561729 - MIR3 SINE MIR -15 193 88 202 244 128 0 chr12 51227074 51227152 -92559303 + L2 LINE L2 3201 3288 -25 623 263 129 17 chr12 51231799 51232031 -92554424 + MIR SINE MIR 1 258 -4 2006 119 13 36 chr12 51233184 51233487 -92552968 - AluJo SINE Alu -16 296 1 252 291 76 82 chr12 51233505 51233784 -92552671 + L2 LINE L2 2723 2996 -276 2411 76 3 0 chr12 51233784 51234073 -92552382 + AluSp SINE Alu 1 290 -23 252 291 76 82 chr12 51234073 51234143 -92552312 + L2 LINE L2 2996 3065 -207 493 343 107 4 chr12 51234395 51234628 -92551827 - MIR SINE MIR -3 259 3 2428 81 0 3 chr12 51236120 51236418 -92550037 - AluSc SINE Alu -12 297 1 2353 77 7 7 chr12 51238538 51238838 -92547617 + AluSc SINE Alu 1 300 -9 180 257 69 59 chr12 51239167 51239268 -92547187 + L2 LINE L2 2873 2974 -339 483 179 12 0 chr12 51239440 51239524 -92546931 - FLAM_A SINE Alu -10 132 48 2754 144 113 0 chr12 51239524 51239817 -92546638 - L1MA7 LINE L1 -338 5953 5694 2049 109 70 0 chr12 51239817 51240101 -92546354 - AluY SINE Alu -7 304 1 851 181 0 0 chr12 51240104 51240237 -92546218 - AluJo/FLAM SINE Alu -169 133 1 2754 144 113 0 chr12 51240237 51240489 -92545966 - L1MA7 LINE L1 -598 5693 5342 1605 139 4 31 chr12 51240496 51240755 -92545700 + AluJo SINE Alu 7 258 -54 2861 131 41 36 chr12 51240772 51240997 -92545458 - L1MA7 LINE L1 -899 5247 5025 2102 137 3 10 chr12 51240997 51241304 -92545151 - AluSx SINE Alu -7 305 1 2861 131 41 36 chr12 51241304 51241635 -92544820 - L1MA7 LINE L1 -1121 5025 4688 1721 128 116 3 chr12 51241803 51242138 -92544317 - L1MA7 LINE L1 -1458 4688 4316 198 297 58 65 chr12 51242145 51242283 -92544172 + L2 LINE L2 3132 3268 -4 2274 108 7 0 chr12 51242338 51242633 -92543822 - AluSg SINE Alu -13 297 1 198 0 0 0 chr12 51242633 51242655 -92543800 + (T)n Simple_repeat Simple_repeat 1 22 0 193 384 38 15 chr12 51243133 51243266 -92543189 - L2 LINE L2 -493 2821 2686 2702 226 82 33 chr12 51243268 51243361 -92543094 + L1MC4a LINE L1 6732 6819 -989 1779 135 98 0 chr12 51243361 51243627 -92542828 + AluSx SINE Alu 1 292 -20 2702 226 82 33 chr12 51243627 51244408 -92542047 + L1MC4a LINE L1 6819 7649 -159 238 167 0 0 chr12 51244592 51244640 -92541815 + L1ME LINE L1 5179 5226 -920 2351 82 20 3 chr12 51244640 51244945 -92541510 - AluSq SINE Alu -3 310 1 1094 82 15 0 chr12 51244945 51245080 -92541375 - AluSq/x SINE Alu -176 137 1 206 225 0 0 chr12 51246719 51246759 -92539696 + CT-rich Low_complexity Low_complexity 4 43 0 2046 153 3 7 chr12 51247435 51247736 -92538719 + AluSx SINE Alu 1 300 -12 2527 63 0 0 chr12 51247743 51248043 -92538412 + AluY SINE Alu 1 300 -11 1466 174 78 4 chr12 51248173 51248443 -92538012 - AluJo SINE Alu -22 290 1 2141 123 10 0 chr12 51248445 51248747 -92537708 - AluSx SINE Alu -7 305 1 342 224 0 41 chr12 51249061 51249159 -92537296 + L1ME LINE L1 5691 5784 -337 345 234 145 21 chr12 51249174 51249319 -92537136 + L1MC5 LINE L1 7676 7838 -123 303 247 93 21 chr12 51249395 51249492 -92536963 + L1MC5 LINE L1 7810 7913 -48 3318 242 43 56 chr12 51249494 51250406 -92536049 + HAL1 LINE L1 1019 1941 -566 1729 149 21 3 chr12 51250406 51250719 -92535736 + AluSx SINE Alu 1 318 0 3318 242 43 56 chr12 51250719 51250790 -92535665 + HAL1 LINE L1 1941 2011 -496 2438 78 3 0 chr12 51250790 51251098 -92535357 + AluSp SINE Alu 1 309 -4 3318 242 43 56 chr12 51251098 51251310 -92535145 + HAL1 LINE L1 2011 2202 -305 246 62 0 0 chr12 51251337 51251369 -92535086 + (TG)n Simple_repeat Simple_repeat 1 32 0 338 211 40 0 chr12 51251441 51251517 -92534938 + L1ME4a LINE L1 6042 6120 -1 3219 186 22 8 chr12 51252179 51252898 -92533557 - L1 LINE L1 -792 5354 4626 438 160 0 85 chr12 51253037 51253084 -92533371 - L1MC4 LINE L1 -475 7567 7532 2007 117 0 52 chr12 51253084 51253408 -92533047 - AluSx SINE Alu 0 312 6 438 160 0 85 chr12 51253408 51253466 -92532989 - L1MC4 LINE L1 -510 7532 7471 909 199 26 16 chr12 51253484 51253675 -92532780 - AluJb SINE Alu 0 312 120 480 239 102 6 chr12 51253675 51253812 -92532643 - L1MC4 LINE L1 -572 7470 7313 1637 191 27 0 chr12 51253812 51254110 -92532345 - AluJb SINE Alu -6 306 1 480 239 102 6 chr12 51254110 51254139 -92532316 - L1MC4 LINE L1 -729 7313 7288 3457 155 76 19 chr12 51254153 51254571 -92531884 + L1MB8 LINE L1 5376 5769 -409 1713 147 3 69 chr12 51254571 51254712 -92531743 + AluJb SINE Alu 1 111 -201 1888 168 0 0 chr12 51254712 51255022 -92531433 + AluJb SINE Alu 1 310 -2 1713 147 3 69 chr12 51255022 51255199 -92531256 + AluJb SINE Alu 111 298 -14 3457 155 76 19 chr12 51255199 51255529 -92530926 + L1MB8 LINE L1 5769 6167 -11 6682 68 42 19 chr12 51255529 51257323 -92529132 + SVA Other Other 5 1394 0 2043 133 3 0 chr12 51257348 51257656 -92528799 + AluSx SINE Alu 1 309 -3 821 179 76 0 chr12 51257664 51257848 -92528607 - L1MC4 LINE L1 -740 7302 7105 21 0 0 0 chr12 51257856 51257877 -92528578 + AT_rich Low_complexity Low_complexity 1 21 0 2148 108 0 3 chr12 51257991 51258287 -92528168 - AluSx SINE Alu -17 295 1 1281 221 84 22 chr12 51259522 51259879 -92526576 - MLT1G LTR MaLR 0 590 212 205 279 0 0 chr12 51260027 51260070 -92526385 + (TG)n Simple_repeat Simple_repeat 1 43 0 1597 241 35 32 chr12 51260289 51260753 -92525702 + MLT1C LTR MaLR 1 465 -2 375 276 19 9 chr12 51261303 51261408 -92525047 + MIR3 SINE MIR 54 159 -49 2246 99 7 0 chr12 51261502 51261806 -92524649 - AluSx SINE Alu -6 306 1 337 253 71 0 chr12 51261889 51261988 -92524467 + L3 LINE CR1 1347 1452 -125 199 359 26 26 chr12 51263638 51263755 -92522700 - MIR SINE MIR -65 143 27 321 348 32 19 chr12 51263941 51264099 -92522356 + MIR SINE MIR 33 192 -70 661 254 102 41 chr12 51266124 51266368 -92520087 - L2 LINE L2 -4 3268 3010 432 248 48 24 chr12 51266512 51266637 -92519818 - MIR SINE MIR -133 129 2 2320 100 3 0 chr12 51266965 51267276 -92519179 - AluSp SINE Alu -1 312 1 362 338 120 11 chr12 51267374 51267649 -92518806 - L2 LINE L2 0 3272 2968 865 277 43 4 chr12 51268003 51268238 -92518217 + MIR SINE MIR 18 261 -1 352 287 163 0 chr12 51268487 51268616 -92517839 + MIR SINE MIR 35 184 -78 201 253 32 9 chr12 51269169 51269268 -92517187 - L2 LINE L2 0 3313 3125 301 284 23 0 chr12 51270093 51270181 -92516274 + L1ME4a LINE L1 5690 5779 -2029 353 310 45 73 chr12 51270226 51270471 -92515984 + L1ME4a LINE L1 5878 6115 -6 330 210 63 78 chr12 51270522 51270664 -92515791 - MIR SINE MIR -56 152 58 2120 95 3 7 chr12 51270999 51271294 -92515161 + AluSx SINE Alu 1 294 -18 308 239 0 15 chr12 51271394 51271461 -92514994 + MIR SINE MIR 2 67 -195 724 256 40 5 chr12 51271480 51271679 -92514776 - MIR SINE MIR -3 259 54 2235 75 0 29 chr12 51271788 51272096 -92514359 + AluY SINE Alu 1 299 -12 466 251 67 51 chr12 51272101 51272296 -92514159 - MIR SINE MIR -12 250 53 657 235 0 0 chr12 51273039 51273218 -92513237 + (TG)n Simple_repeat Simple_repeat 2 180 0 741 217 0 0 chr12 51273243 51273423 -92513032 + (TG)n Simple_repeat Simple_repeat 1 180 0 624 236 0 0 chr12 51273452 51273630 -92512825 + (TG)n Simple_repeat Simple_repeat 2 179 0 684 232 0 0 chr12 51273641 51273890 -92512565 + (TG)n Simple_repeat Simple_repeat 1 249 0 259 140 0 0 chr12 51273892 51273942 -92512513 + MER4-int LTR ERV1 1111 1160 -5438 306 239 0 44 chr12 51273947 51274106 -92512349 + (TATG)n Simple_repeat Simple_repeat 3 154 0 * 666 229 0 0 chr12 51274074 51274253 -92512202 + (TG)n Simple_repeat Simple_repeat 2 180 0 212 280 0 0 chr12 51274253 51274303 -92512152 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 609 236 0 0 chr12 51274304 51274534 -92511921 + (TG)n Simple_repeat Simple_repeat 1 230 0 255 196 0 0 chr12 51274534 51274585 -92511870 + MER4-int LTR ERV1 1112 1162 -5436 672 240 0 0 chr12 51274585 51275345 -92511110 + (TG)n Simple_repeat Simple_repeat 1 760 0 753 232 6 0 chr12 51275372 51275732 -92510723 + (TG)n Simple_repeat Simple_repeat 1 362 0 657 235 0 0 chr12 51276787 51276966 -92509489 + (TG)n Simple_repeat Simple_repeat 2 180 0 723 219 0 0 chr12 51276985 51277163 -92509292 + (TG)n Simple_repeat Simple_repeat 1 178 0 633 235 0 0 chr12 51277187 51277366 -92509089 + (TG)n Simple_repeat Simple_repeat 2 180 0 684 247 0 0 chr12 51277383 51277638 -92508817 + (TG)n Simple_repeat Simple_repeat 1 255 0 265 154 0 0 chr12 51277640 51277692 -92508763 + MER4-int LTR ERV1 1111 1162 -5436 666 248 0 0 chr12 51277732 51278040 -92508415 + (TG)n Simple_repeat Simple_repeat 1 308 0 203 273 0 0 chr12 51278042 51278086 -92508369 + (TATG)n Simple_repeat Simple_repeat 4 47 0 609 236 0 0 chr12 51278087 51278261 -92508194 + (TG)n Simple_repeat Simple_repeat 1 174 0 702 229 0 0 chr12 51278281 51278460 -92507995 + (TG)n Simple_repeat Simple_repeat 2 180 0 672 238 0 6 chr12 51278485 51279107 -92507348 + (TG)n Simple_repeat Simple_repeat 1 618 0 783 227 0 0 chr12 51279139 51279589 -92506866 + (TG)n Simple_repeat Simple_repeat 1 450 0 269 200 0 0 chr12 51279596 51279651 -92506804 + MER4-int LTR ERV1 1111 1165 -5433 659 233 0 6 chr12 51279651 51279974 -92506481 + (TG)n Simple_repeat Simple_repeat 1 321 0 1946 261 148 41 chr12 51281839 51283012 -92503443 - L2 LINE L2 0 3272 1850 2216 104 0 7 chr12 51283012 51283319 -92503136 + AluSx SINE Alu 1 305 -7 1946 261 148 41 chr12 51283319 51283614 -92502841 - L2 LINE L2 -1422 1850 1588 2224 89 0 0 chr12 51283766 51284058 -92502397 + AluY SINE Alu 1 292 -19 480 275 18 0 chr12 51284623 51284732 -92501723 + MER81 DNA DNA 4 114 0 293 273 0 0 chr12 51284754 51284820 -92501635 + MIR SINE MIR 70 135 -73 556 261 87 64 chr12 51285438 51285540 -92500915 + MIR SINE MIR 40 138 -124 2308 75 3 7 chr12 51285540 51285847 -92500608 - AluY SINE Alu -5 306 1 556 261 87 64 chr12 51285847 51285962 -92500493 + MIR SINE MIR 138 262 0 732 233 205 0 chr12 51290482 51290697 -92495758 - MIR SINE MIR -2 260 2 198 359 66 9 chr12 51290710 51290816 -92495639 + L2 LINE L2 3122 3233 -80 316 328 253 16 chr12 51291045 51292205 -92494250 + L2 LINE L2 1219 2653 -661 211 343 14 0 chr12 51292565 51292638 -92493817 + L2 LINE L2 3235 3308 -5 180 0 0 0 chr12 51292641 51292661 -92493794 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 185 344 0 0 chr12 51292984 51293045 -92493410 + L2 LINE L2 3180 3240 -73 464 244 75 41 chr12 51293088 51293305 -92493150 + MIR SINE MIR 3 230 -32 501 266 16 0 chr12 51293844 51293968 -92492487 + MIR SINE MIR 111 236 -26 198 0 0 0 chr12 51294132 51294154 -92492301 + (CAGGG)n Simple_repeat Simple_repeat 3 24 0 665 290 134 0 chr12 51295497 51295714 -92490741 + MIR SINE MIR 16 261 -1 2047 131 0 10 chr12 51297603 51297917 -92488538 - AluJb SINE Alu -1 311 1 327 311 0 10 chr12 51298111 51298214 -92488241 + MIR SINE MIR 20 121 -141 585 360 63 26 chr12 51298612 51298962 -92487493 + L2 LINE L2 2897 3259 -13 193 310 172 0 chr12 51300555 51300642 -92485813 - MIR SINE MIR -114 148 47 323 308 70 7 chr12 51300765 51300908 -92485547 - MIR SINE MIR -66 196 45 233 189 14 68 chr12 51300951 51301025 -92485430 + GA-rich Low_complexity Low_complexity 5 74 0 335 247 10 41 chr12 51301117 51301214 -92485241 - MIR3 SINE MIR -5 203 110 181 264 75 0 chr12 51301444 51301497 -92484958 + L3b LINE CR1 1397 1453 -130 225 242 15 0 chr12 51303104 51303170 -92483285 + (CCCCG)n Simple_repeat Simple_repeat 4 70 0 331 290 126 7 chr12 51303895 51304100 -92482355 + MIR3 SINE MIR 40 262 0 2361 93 3 0 chr12 51304319 51304630 -92481825 - AluSx SINE Alu 0 312 1 236 267 65 83 chr12 51304758 51304975 -92481480 + L2 LINE L2 2893 3105 -167 783 290 100 58 chr12 51305188 51305499 -92480956 + L2 LINE L2 2842 3179 -134 216 0 0 0 chr12 51305499 51305523 -92480932 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 783 290 100 58 chr12 51305523 51305659 -92480796 + L2 LINE L2 3179 3308 -5 803 145 16 0 chr12 51305774 51305898 -92480557 - FRAM SINE Alu -22 154 29 2236 96 0 0 chr12 51305942 51306235 -92480220 - AluSq SINE Alu -20 293 1 238 398 0 0 chr12 51306286 51306374 -92480081 + MIR SINE MIR 1 88 -174 304 303 0 11 chr12 51306400 51306489 -92479966 + MIR SINE MIR 174 261 -1 1814 168 13 7 chr12 51306893 51307202 -92479253 - AluJb SINE Alu -1 311 1 1869 120 0 15 chr12 51307263 51307530 -92478925 + AluSx SINE Alu 1 263 -49 2335 97 3 0 chr12 51307632 51307943 -92478512 - AluSx SINE Alu 0 312 1 323 111 0 0 chr12 51307943 51307997 -92478458 - AluSq/x SINE Alu -166 136 83 503 260 276 5 chr12 51308112 51308308 -92478147 + MIR SINE MIR 12 260 -2 421 300 154 4 chr12 51308363 51308603 -92477852 - L2 LINE L2 -788 2526 2251 299 330 0 10 chr12 51309136 51309236 -92477219 - MIR SINE MIR -60 148 50 190 385 12 0 chr12 51310189 51310272 -92476183 + MIR SINE MIR 40 123 -85 432 299 71 38 chr12 51310394 51310605 -92475850 + MIR SINE MIR 4 221 -41 198 373 0 0 chr12 51310650 51310725 -92475730 + MIR SINE MIR 144 218 -44 317 268 49 57 chr12 51310784 51310907 -92475548 - L2 LINE L2 -3 3269 3148 457 317 61 53 chr12 51311910 51312270 -92474185 - L2 LINE L2 0 3272 2910 1866 126 11 21 chr12 51312374 51312692 -92473763 - AluSx SINE Alu 0 315 1 192 309 92 26 chr12 51312745 51312897 -92473558 - L2 LINE L2 -686 2628 2467 904 279 39 12 chr12 51313027 51313281 -92473174 - MIR SINE MIR 0 262 2 183 298 18 0 chr12 51313712 51313769 -92472686 - L2 LINE L2 -2 3311 3254 2276 68 7 10 chr12 51314005 51314300 -92472155 - AluY SINE Alu -17 294 1 273 71 0 24 chr12 51314331 51314373 -92472082 + Alu SINE Alu 1 41 -262 1593 153 0 0 chr12 51314479 51314721 -92471734 - AluSq SINE Alu -71 242 1 219 36 0 0 chr12 51314746 51314774 -92471681 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6458 73 35 20 chr12 51314774 51315694 -92470761 - SVA Other Other -20 1366 433 1520 84 20 5 chr12 51316037 51316240 -92470215 + AluSg/x SINE Alu 86 291 -21 1871 155 0 19 chr12 51316280 51316590 -92469865 + AluJo SINE Alu 1 304 -8 238 230 40 30 chr12 51316614 51316714 -92469741 - L1ME4a LINE L1 -57 6064 5964 1172 178 29 4 chr12 51317161 51317439 -92469016 + MER33 DNA MER1_type 1 274 -50 360 0 0 0 chr12 51317439 51317479 -92468976 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1198 194 0 52 chr12 51317485 51317774 -92468681 - AluJb SINE Alu -37 275 2 745 146 4 130 chr12 51317905 51318144 -92468311 - AluJb SINE Alu -101 211 3 314 353 38 30 chr12 51318455 51318588 -92467867 + L2 LINE L2 3139 3272 0 273 29 0 0 chr12 51318912 51318946 -92467509 + (CA)n Simple_repeat Simple_repeat 2 35 0 404 263 58 88 chr12 51319370 51319407 -92467048 + MIR SINE MIR 76 113 -149 1681 177 3 26 chr12 51319407 51319712 -92466743 - AluJb SINE Alu -14 298 1 404 263 58 88 chr12 51319712 51319845 -92466610 + MIR SINE MIR 113 241 -21 2383 84 0 3 chr12 51320231 51320539 -92465916 + AluSx SINE Alu 1 307 -5 199 242 42 63 chr12 51320552 51320647 -92465808 + MIR SINE MIR 66 158 -104 1928 148 7 0 chr12 51320728 51321025 -92465430 + AluJo SINE Alu 1 299 -13 1786 92 8 4 chr12 51322206 51322445 -92464010 - AluSq SINE Alu -73 240 1 235 309 117 0 chr12 51322747 51322841 -92463614 + MIR SINE MIR 47 151 -111 34 0 0 0 chr12 51323129 51323163 -92463292 + AT_rich Low_complexity Low_complexity 1 34 0 664 166 65 36 chr12 51323168 51323285 -92463170 + FLAM_C SINE Alu 1 124 -188 1842 127 10 13 chr12 51323285 51323585 -92462870 - AluSx SINE Alu -13 299 1 664 166 65 36 chr12 51323585 51323606 -92462849 + FLAM_C SINE Alu 124 143 -169 351 105 0 0 chr12 51324599 51324656 -92461799 + (CA)n Simple_repeat Simple_repeat 2 58 0 359 301 24 41 chr12 51325858 51325981 -92460474 + MIR3 SINE MIR 4 124 -84 434 295 27 24 chr12 51325981 51326205 -92460250 + MIR SINE MIR 3 223 -39 184 280 100 90 chr12 51326654 51326754 -92459701 - MIR SINE MIR -6 256 156 2170 93 0 17 chr12 51327273 51327575 -92458880 - AluSx SINE Alu -4 308 12 324 312 7 14 chr12 51327775 51327894 -92458561 + (ATGGTG)n Simple_repeat Simple_repeat 4 123 -20 2075 227 76 55 chr12 51327894 51328475 -92457980 - MLT1E LTR MaLR 0 593 1 324 312 7 14 chr12 51328475 51328496 -92457959 + (ATGGTG)n Simple_repeat Simple_repeat 123 143 0 2032 138 0 22 chr12 51329172 51329490 -92456965 - AluSx SINE Alu -1 311 1 2156 118 0 6 chr12 51329528 51329843 -92456612 - AluSq SINE Alu 0 313 1 390 251 104 115 chr12 51330017 51330165 -92456290 + MIR3 SINE MIR 4 151 -57 2451 66 0 0 chr12 51330165 51330466 -92455989 - AluY SINE Alu -10 301 1 390 251 104 115 chr12 51330466 51330500 -92455955 + MIR3 SINE MIR 151 184 -24 753 125 0 0 chr12 51330506 51330610 -92455845 + FLAM_A SINE Alu 15 118 -24 2146 125 0 3 chr12 51330682 51330987 -92455468 - AluSx SINE Alu -8 304 1 1962 179 0 0 chr12 51331026 51331338 -92455117 + AluJb SINE Alu 1 312 0 1279 186 0 17 chr12 51332878 51332935 -92453520 + AluJo SINE Alu 80 136 -176 2290 90 0 0 chr12 51332935 51333234 -92453221 + AluSg SINE Alu 1 299 -11 1279 186 0 17 chr12 51333234 51333413 -92453042 + AluJo SINE Alu 136 312 0 468 215 132 0 chr12 51333694 51333838 -92452617 + MIR SINE MIR 100 262 0 296 355 50 81 chr12 51333953 51334395 -92452060 + L2 LINE L2 2825 3252 -20 189 0 0 0 chr12 51334657 51334678 -92451777 + (T)n Simple_repeat Simple_repeat 1 21 0 197 244 0 0 chr12 51334678 51334719 -92451736 - L2 LINE L2 -30 3283 3243 25 65 0 0 chr12 51335196 51335242 -92451213 + GC_rich Low_complexity Low_complexity 1 46 0 252 284 14 0 chr12 51336068 51336142 -92450313 + CT-rich Low_complexity Low_complexity 5 79 0 1760 138 42 7 chr12 51336204 51336487 -92449968 - AluSx SINE Alu -19 293 1 292 286 16 39 chr12 51336923 51337105 -92449350 + GA-rich Low_complexity Low_complexity 1 178 0 354 258 48 57 chr12 51337672 51337796 -92448659 - MIR SINE MIR -112 150 28 236 368 80 8 chr12 51338210 51338335 -92448120 + L2 LINE L2 3128 3261 -11 302 257 0 0 chr12 51338401 51338475 -92447980 + L3b LINE CR1 1338 1411 -172 2060 95 34 7 chr12 51338560 51338854 -92447601 + AluSx SINE Alu 3 304 -8 1929 81 0 4 chr12 51338854 51339101 -92447354 + AluY SINE Alu 1 246 -65 486 129 0 169 chr12 51339101 51339150 -92447305 - MER5B DNA MER1_type -75 103 47 2120 96 31 0 chr12 51339150 51339441 -92447014 - AluSx SINE Alu -12 300 1 2239 101 3 0 chr12 51339451 51339758 -92446697 - AluSq SINE Alu -5 308 1 486 129 0 169 chr12 51339758 51339821 -92446634 - MER5B DNA MER1_type -141 37 1 686 258 91 3 chr12 51339885 51340096 -92446359 - MIR SINE MIR 0 262 37 210 143 0 0 chr12 51341521 51341556 -92444899 + (TG)n Simple_repeat Simple_repeat 1 35 0 223 216 20 0 chr12 51341649 51341700 -92444755 + (CA)n Simple_repeat Simple_repeat 1 52 0 219 260 60 0 chr12 51341966 51342066 -92444389 + (CCGGG)n Simple_repeat Simple_repeat 1 106 0 27 49 0 0 chr12 51342083 51342124 -92444331 + GC_rich Low_complexity Low_complexity 1 41 0 355 244 189 24 chr12 51344633 51344760 -92441695 + MER5A DNA MER1_type 42 189 0 394 259 61 30 chr12 51345193 51345324 -92441131 - MIR SINE MIR -79 183 49 538 292 60 6 chr12 51350482 51350650 -92435805 - MIR SINE MIR -66 196 20 935 325 60 62 chr12 51350790 51351707 -92434748 + L2 LINE L2 1080 1996 -1318 2266 84 3 32 chr12 51351707 51352016 -92434439 - AluSp SINE Alu -11 302 3 935 325 60 62 chr12 51352016 51352183 -92434272 + L2 LINE L2 1996 2162 -1152 1810 217 23 39 chr12 51352265 51352748 -92433707 - L1ME3 LINE L1 -109 6053 5579 802 327 144 18 chr12 51352765 51353426 -92433029 + L2 LINE L2 2153 2896 -418 204 216 0 0 chr12 51353484 51353521 -92432934 + (CA)n Simple_repeat Simple_repeat 1 37 0 2052 145 0 0 chr12 51353540 51353893 -92432562 - AluSx SINE Alu 0 353 1 314 314 100 39 chr12 51353902 51354131 -92432324 + L2 LINE L2 3005 3247 -66 282 343 72 39 chr12 51354152 51354333 -92432122 + MIR SINE MIR 20 206 -56 282 175 0 0 chr12 51354655 51354735 -92431720 + (TG)n Simple_repeat Simple_repeat 2 81 0 296 246 64 27 chr12 51355368 51355478 -92430977 - L2 LINE L2 -192 3080 2967 2381 70 0 51 chr12 51355566 51355881 -92430574 - AluY SINE Alu -12 299 1 1240 113 0 0 chr12 51355952 51356111 -92430344 - AluSg/x SINE Alu -19 293 135 231 255 0 0 chr12 51358000 51358047 -92428408 + GA-rich Low_complexity Low_complexity 1 47 0 276 30 0 0 chr12 51358614 51358647 -92427808 + (CTGGGG)n Simple_repeat Simple_repeat 4 36 0 423 0 0 0 chr12 51359160 51359207 -92427248 + (TG)n Simple_repeat Simple_repeat 2 48 0 2424 95 0 0 chr12 51360484 51360778 -92425677 + AluSx SINE Alu 1 294 -18 575 246 76 0 chr12 51360925 51361096 -92425359 - LTR33 LTR ERVL 0 521 338 346 268 117 50 chr12 51361125 51361304 -92425151 - LTR33A LTR ERVL -271 252 62 1785 167 7 10 chr12 51363429 51363728 -92422727 + AluJb SINE Alu 1 298 -14 469 244 82 7 chr12 51364628 51364792 -92421663 - MIR SINE MIR -56 206 27 716 140 0 9 chr12 51368231 51368345 -92418110 + AluJb SINE Alu 6 118 -194 2595 44 3 0 chr12 51368345 51368642 -92417813 - AluY SINE Alu -13 298 1 29 0 0 0 chr12 51368651 51368680 -92417775 + AT_rich Low_complexity Low_complexity 1 29 0 1896 168 7 7 chr12 51368684 51368994 -92417461 + AluSx SINE Alu 1 310 -2 343 295 36 9 chr12 51369082 51369194 -92417261 + MIR SINE MIR 29 143 -65 217 205 0 0 chr12 51369331 51369370 -92417085 + (CTGGGG)n Simple_repeat Simple_repeat 1 39 0 24 85 0 0 chr12 51369562 51369621 -92416834 + GC_rich Low_complexity Low_complexity 1 59 0 203 214 43 43 chr12 51369852 51369922 -92416533 + G-rich Low_complexity Low_complexity 3 72 0 204 40 0 0 chr12 51370779 51370804 -92415651 + (TGG)n Simple_repeat Simple_repeat 1 25 0 793 263 45 4 chr12 51373660 51373907 -92412548 + MIR SINE MIR 2 258 -4 1443 212 33 81 chr12 51374912 51375123 -92411332 - MER63B DNA MER1_type -626 436 216 2431 59 0 56 chr12 51375123 51375443 -92411012 - AluY SINE Alu -9 302 1 1443 212 33 81 chr12 51375443 51375577 -92410878 - MER63B DNA MER1_type -846 216 77 2332 107 3 0 chr12 51375577 51375876 -92410579 - AluSp SINE Alu -13 300 1 180 0 0 0 chr12 51375876 51375896 -92410559 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2071 113 3 7 chr12 51375896 51376179 -92410276 - AluSq SINE Alu -31 282 1 1443 212 33 81 chr12 51376179 51376287 -92410168 - MER63B DNA MER1_type -982 80 2 2119 75 68 20 chr12 51376510 51376822 -92409633 - AluSc SINE Alu 0 328 3 737 196 0 0 chr12 51377058 51377191 -92409264 + FLAM_A SINE Alu 1 133 0 1255 104 0 0 chr12 51377198 51377352 -92409103 + AluSg SINE Alu 1 154 -156 312 118 44 0 chr12 51377453 51377521 -92408934 + CT-rich Low_complexity Low_complexity 1 71 0 1738 177 24 0 chr12 51378215 51378509 -92407946 - AluJo SINE Alu -11 301 1 2377 105 0 0 chr12 51378511 51378816 -92407639 - AluSg SINE Alu -5 305 1 382 147 12 1 chr12 51380077 51380149 -92406306 - MLT1D LTR MaLR -49 565 368 2432 88 0 13 chr12 51380173 51380490 -92405965 - AluSp SINE Alu 0 313 1 2023 136 0 26 chr12 51380491 51380793 -92405662 - AluJo SINE Alu -18 294 1 2629 68 0 0 chr12 51381019 51381329 -92405126 - AluSg SINE Alu 0 310 1 900 86 0 0 chr12 51382990 51383106 -92403349 + AluSg/x SINE Alu 189 304 -8 195 235 88 0 chr12 51383355 51383423 -92403032 - MIR SINE MIR -126 136 63 904 114 45 0 chr12 51383906 51384038 -92402417 - FRAM SINE Alu -7 169 32 1865 144 70 0 chr12 51384096 51384380 -92402075 - AluSx SINE Alu -7 305 2 300 111 0 0 chr12 51384431 51384476 -92401979 + (A)n Simple_repeat Simple_repeat 1 45 0 805 245 133 78 chr12 51384554 51384926 -92401529 - MLT1G1 LTR MaLR 0 595 180 1768 180 3 3 chr12 51384926 51385215 -92401240 + AluJo SINE Alu 1 289 -23 805 245 133 78 chr12 51385215 51385406 -92401049 - MLT1G1 LTR MaLR -415 180 1 1571 181 10 41 chr12 51385440 51385754 -92400701 + AluJb SINE Alu 1 304 -8 2149 123 3 3 chr12 51385844 51386144 -92400311 + AluSx SINE Alu 1 300 -12 2345 99 0 20 chr12 51386144 51386446 -92400009 + AluSg SINE Alu 1 297 -13 341 328 38 15 chr12 51386471 51386602 -92399853 - L2 LINE L2 -5 3308 3175 400 313 153 23 chr12 51386802 51387195 -92399260 + L1MEd LINE L1 59 502 -5617 272 238 36 94 chr12 51387436 51387508 -92398947 + L1P5 LINE L1 5258 5333 -837 2283 103 10 0 chr12 51387508 51387798 -92398657 + AluSx SINE Alu 1 293 -19 272 238 36 94 chr12 51387798 51387948 -92398507 + L1P5 LINE L1 5333 5467 -703 437 261 158 19 chr12 51387953 51388213 -92398242 + L1ME3 LINE L1 5536 5831 -331 1392 222 112 20 chr12 51388229 51388641 -92397814 - MLT2B1 LTR ERVL 0 520 3 1913 146 14 3 chr12 51388642 51388936 -92397519 + AluJo SINE Alu 1 297 -15 1459 198 76 12 chr12 51388964 51389307 -92397148 + MLT1A1 LTR MaLR 1 365 0 506 250 0 50 chr12 51389378 51389518 -92396937 - FLAM_A SINE Alu 0 133 1 787 164 11 79 chr12 51389558 51389592 -92396863 - AluJo/FRAM SINE Alu -1 301 266 2076 127 7 13 chr12 51389592 51389892 -92396563 + AluSx SINE Alu 1 298 -14 787 164 11 79 chr12 51389892 51390034 -92396421 - AluJo/FRAM SINE Alu -36 266 137 844 209 194 18 chr12 51390056 51390339 -92396116 - MER20B DNA MER1_type -303 480 148 2136 148 0 0 chr12 51390343 51390654 -92395801 + AluSx SINE Alu 1 311 -1 1649 124 89 12 chr12 51391146 51391404 -92395051 - AluJb SINE Alu -34 278 1 1725 155 7 30 chr12 51392901 51393198 -92393257 - AluJo SINE Alu -17 295 6 28 60 0 15 chr12 51393793 51393836 -92392619 + AT_rich Low_complexity Low_complexity 1 44 -22 2433 63 3 0 chr12 51393836 51394122 -92392333 - AluY SINE Alu -24 287 1 28 60 0 15 chr12 51394122 51394145 -92392310 + AT_rich Low_complexity Low_complexity 44 66 0 2309 101 0 7 chr12 51394262 51394559 -92391896 + AluSx SINE Alu 1 295 -17 2319 107 0 7 chr12 51394567 51394877 -92391578 + AluSc SINE Alu 2 309 0 1317 161 191 0 chr12 51395271 51395507 -92390948 - AluSx SINE Alu -31 281 1 1723 158 20 14 chr12 51395523 51395815 -92390640 - AluJo SINE Alu -8 304 11 1722 124 117 0 chr12 51395828 51396094 -92390361 - AluSx SINE Alu -15 297 1 536 254 87 70 chr12 51396218 51396403 -92390052 - L1ME1 LINE L1 -2 6176 5989 209 218 91 0 chr12 51396694 51396749 -92389706 - L2 LINE L2 -5 3308 3249 428 273 48 48 chr12 51396773 51396842 -92389613 + MIR SINE MIR 86 154 -108 2321 97 10 0 chr12 51396842 51397142 -92389313 - AluSx SINE Alu -9 303 1 428 273 48 48 chr12 51397142 51397237 -92389218 + MIR SINE MIR 153 250 -12 2468 90 0 0 chr12 51397372 51397671 -92388784 - AluSx SINE Alu -13 299 1 713 322 95 42 chr12 51397717 51398538 -92387917 - L2 LINE L2 -264 3008 2128 247 291 77 34 chr12 51399185 51399302 -92387153 - L2 LINE L2 -11 3302 3181 2391 92 0 3 chr12 51399313 51399608 -92386847 + AluSx SINE Alu 1 294 -18 2449 79 3 3 chr12 51399654 51399957 -92386498 + AluSx SINE Alu 1 303 -9 1786 166 119 35 chr12 51400259 51400688 -92385767 - MLT1C LTR MaLR 0 467 3 397 277 80 18 chr12 51402771 51402883 -92383572 - L2 LINE L2 -1 3271 3153 2559 50 7 3 chr12 51403211 51403509 -92382946 - AluY SINE Alu -12 299 1 943 125 0 0 chr12 51403559 51403695 -92382760 - AluSp/q SINE Alu -12 301 166 771 141 16 8 chr12 51408677 51408798 -92377657 + FLAM_A SINE Alu 5 126 -7 381 245 50 50 chr12 51410781 51410900 -92375555 - MIR SINE MIR -49 213 92 2489 95 0 0 chr12 51410900 51411205 -92375250 + AluSg SINE Alu 1 305 -5 381 245 50 50 chr12 51411205 51411224 -92375231 - MIR SINE MIR -169 93 75 366 23 0 0 chr12 51414951 51414994 -92371461 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 1040 123 0 75 chr12 51415015 51415077 -92371378 - AluJo SINE Alu -139 173 108 180 0 0 0 chr12 51415077 51415097 -92371358 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1040 123 0 75 chr12 51415097 51415221 -92371234 - AluJo SINE Alu -204 108 1 398 198 20 0 chr12 51415238 51415336 -92371119 + L1PB4 LINE L1 6059 6132 -24 2532 60 0 0 chr12 51415350 51415649 -92370806 - AluY SINE Alu -12 299 1 2103 108 18 0 chr12 51415654 51415974 -92370481 - AluSx SINE Alu 0 325 1 759 187 73 7 chr12 51415974 51416150 -92370305 - FRAM SINE Alu 0 176 1 2179 91 10 14 chr12 51416300 51416597 -92369858 - AluSp SINE Alu -17 296 1 183 314 118 59 chr12 51416663 51416816 -92369639 + L2 LINE L2 2174 2335 -979 603 119 138 0 chr12 51416817 51416926 -92369529 - AluSc SINE Alu 0 309 186 210 114 45 0 chr12 51417011 51417071 -92369384 + G-rich Low_complexity Low_complexity 1 62 0 2201 124 6 13 chr12 51417340 51417654 -92368801 - AluSx SINE Alu 0 312 1 2324 105 3 10 chr12 51417682 51417996 -92368459 + AluSp SINE Alu 1 312 -1 2189 113 17 0 chr12 51418086 51418388 -92368067 + AluSx SINE Alu 1 307 -5 945 125 0 0 chr12 51418477 51418605 -92367850 + FLAM_C SINE Alu 3 130 -13 208 78 0 78 chr12 51418643 51418694 -92367761 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 2358 78 3 3 chr12 51418705 51419000 -92367455 + AluY SINE Alu 1 295 -16 2063 123 0 74 chr12 51419003 51419138 -92367317 + AluSx SINE Alu 1 144 -168 2296 107 7 7 chr12 51419138 51419448 -92367007 + AluSq SINE Alu 2 311 -2 2063 123 0 74 chr12 51419448 51419637 -92366818 + AluSx SINE Alu 144 301 -11 2517 77 3 3 chr12 51419641 51419951 -92366504 + AluSp SINE Alu 1 310 -3 185 352 86 62 chr12 51420267 51420523 -92365932 + L2 LINE L2 2474 2735 -579 1154 165 50 90 chr12 51421296 51421575 -92364880 - AluJo SINE Alu -38 274 7 2116 90 8 0 chr12 51421634 51421902 -92364553 + AluSq SINE Alu 15 284 -29 251 143 0 79 chr12 51421926 51421989 -92364466 - L1MA8 LINE L1 -22 6269 6212 2066 135 3 3 chr12 51421989 51422285 -92364170 - AluSx SINE Alu -9 303 8 1134 131 34 11 chr12 51422331 51422506 -92363949 - AluJo SINE Alu -12 300 122 417 106 0 0 chr12 51422506 51422572 -92363883 - MER41B LTR ERV1 -88 547 482 788 174 0 14 chr12 51422572 51422710 -92363745 - AluJo SINE Alu -175 137 2 2514 81 0 0 chr12 51422777 51423086 -92363369 - AluY SINE Alu -2 309 1 24 0 0 0 chr12 51423089 51423113 -92363342 + AT_rich Low_complexity Low_complexity 1 24 0 1179 106 0 12 chr12 51423113 51423273 -92363182 - AluSg/x SINE Alu -19 293 136 284 0 28 0 chr12 51423275 51423311 -92363144 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2089 107 3 21 chr12 51423311 51423463 -92362992 - AluSx SINE Alu -28 284 138 2452 63 3 7 chr12 51423463 51423762 -92362693 - AluSc SINE Alu -11 298 1 2089 107 3 21 chr12 51423762 51423898 -92362557 - AluSx SINE Alu -174 138 1 2105 132 0 10 chr12 51423907 51424211 -92362244 - AluSx SINE Alu -11 301 1 243 0 0 0 chr12 51424844 51424871 -92361584 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2259 92 0 0 chr12 51424871 51425152 -92361303 - AluSg SINE Alu -29 281 1 192 255 0 0 chr12 51425440 51425487 -92360968 + MIR SINE MIR 161 207 -55 183 349 87 20 chr12 51425525 51425674 -92360781 - MIR SINE MIR 0 262 104 1307 174 78 43 chr12 51425720 51426002 -92360453 + AluJo SINE Alu 1 292 -20 1343 131 90 8 chr12 51426047 51426314 -92360141 - L1MA8 LINE L1 -14 6277 5989 289 171 14 57 chr12 51426506 51426576 -92359879 - MER112 DNA MER1_type -193 67 1 3528 117 25 36 chr12 51428037 51428525 -92357930 - L1PB4 LINE L1 -7 6149 5668 2590 47 0 0 chr12 51428525 51428822 -92357633 - AluY SINE Alu -14 297 1 3528 117 25 36 chr12 51428822 51428941 -92357514 - L1PB4 LINE L1 -488 5668 5549 2190 136 3 0 chr12 51428941 51429250 -92357205 - AluSx SINE Alu -2 310 1 312 328 39 0 chr12 51429384 51429512 -92356943 + L1ME LINE L1 5527 5659 -462 908 249 160 15 chr12 51429552 51429889 -92356566 - L2 LINE L2 0 3313 2928 2254 121 3 0 chr12 51430095 51430401 -92356054 - AluSp SINE Alu -6 307 1 206 311 201 43 chr12 51432098 51432218 -92354237 + MIR SINE MIR 21 121 -141 2116 121 0 20 chr12 51432218 51432515 -92353940 + AluSx SINE Alu 1 291 -21 206 311 201 43 chr12 51432515 51432603 -92353852 + MIR SINE MIR 121 262 0 224 298 92 71 chr12 51432829 51432970 -92353485 - MIR SINE MIR -72 190 47 279 0 0 0 chr12 51432975 51433006 -92353449 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 679 162 27 9 chr12 51433008 51433119 -92353336 - FLAM_A SINE Alu -17 116 4 827 154 0 0 chr12 51433733 51433863 -92352592 + AluSg/x SINE Alu 174 303 -9 2243 126 0 3 chr12 51434525 51434827 -92351628 - AluSx SINE Alu -11 301 1 2323 99 3 3 chr12 51436290 51436602 -92349853 - AluSx SINE Alu 0 312 1 797 176 6 77 chr12 51436826 51436865 -92349590 - AluJo SINE Alu -152 160 120 2597 47 0 19 chr12 51436865 51437182 -92349273 - AluY SINE Alu 0 311 1 797 176 6 77 chr12 51437182 51437312 -92349143 - AluJo SINE Alu -192 120 3 1428 192 50 0 chr12 51437395 51437522 -92348933 + AluJo SINE Alu 1 120 -192 1391 153 25 120 chr12 51437522 51437642 -92348813 + AluJb SINE Alu 1 131 -181 2186 119 0 0 chr12 51437642 51437927 -92348528 - AluSx SINE Alu -13 299 15 1391 153 25 120 chr12 51437927 51438132 -92348323 + AluJb SINE Alu 131 295 -17 1428 192 50 0 chr12 51438132 51438265 -92348190 + AluJo SINE Alu 120 274 -38 185 352 86 62 chr12 51439038 51439294 -92347161 - L2 LINE L2 -579 2735 2474 2517 77 3 3 chr12 51439610 51439920 -92346535 - AluSp SINE Alu -3 310 1 2069 123 0 71 chr12 51439924 51440112 -92346343 - AluSx SINE Alu -11 301 144 2296 107 7 7 chr12 51440112 51440422 -92346033 - AluSq SINE Alu -2 311 2 2069 123 0 71 chr12 51440422 51440557 -92345898 - AluSx SINE Alu -168 144 1 1218 116 0 63 chr12 51440560 51440722 -92345733 - AluJo SINE Alu -16 296 146 2552 69 3 0 chr12 51440722 51441028 -92345427 - AluY SINE Alu -4 307 1 1218 116 0 63 chr12 51441028 51441054 -92345401 - AluJo SINE Alu -166 146 120 26 30 0 0 chr12 51441057 51441090 -92345365 + AT_rich Low_complexity Low_complexity 1 33 0 962 125 0 0 chr12 51441127 51441255 -92345200 - AluJo SINE Alu -182 130 3 2197 112 16 0 chr12 51441344 51441647 -92344808 - AluSx SINE Alu -4 308 1 1827 114 121 11 chr12 51441738 51442019 -92344436 - AluSq SINE Alu -1 312 1 2029 145 10 0 chr12 51442221 51442511 -92343944 + AluSx SINE Alu 1 293 -19 2340 112 0 0 chr12 51442514 51442810 -92343645 + AluSq SINE Alu 1 296 -17 225 0 0 0 chr12 51442818 51442843 -92343612 + (T)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr12 51445923 51445944 -92340511 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2476 64 0 10 chr12 51447965 51448262 -92338193 - AluY SINE Alu -9 302 9 2432 84 10 0 chr12 51448919 51449227 -92337228 - AluSq SINE Alu -2 311 1 2261 114 7 0 chr12 51449946 51450243 -92336212 - AluSq SINE Alu -14 299 1 740 167 8 23 chr12 51450384 51450524 -92335931 - AluJb SINE Alu -181 131 2 2124 99 3 40 chr12 51450556 51450698 -92335757 + AluSx SINE Alu 1 128 -184 2521 65 0 0 chr12 51450698 51450992 -92335463 + AluY SINE Alu 1 294 -17 2124 99 3 40 chr12 51450992 51451151 -92335304 + AluSx SINE Alu 128 291 -21 2021 148 7 0 chr12 51452095 51452392 -92334063 - AluJo SINE Alu -13 299 1 206 263 34 69 chr12 51452473 51452581 -92333874 - MIR SINE MIR -82 126 63 2498 81 0 3 chr12 51452581 51452889 -92333566 - AluSx SINE Alu -5 307 1 206 263 34 69 chr12 51452889 51452948 -92333507 - MIR SINE MIR -145 63 3 * 713 247 32 5 chr12 51452948 51453130 -92333325 + MIR SINE MIR 75 261 -1 2458 76 0 13 chr12 51453130 51453434 -92333021 + AluSp SINE Alu 1 300 -13 2483 87 0 6 chr12 51453434 51453746 -92332709 + AluSg SINE Alu 1 310 0 511 261 60 60 chr12 51454041 51454137 -92332318 + MIR SINE MIR 59 160 -102 1981 100 4 0 chr12 51454137 51454412 -92332043 + AluSg SINE Alu 34 309 0 511 261 60 60 chr12 51454412 51454496 -92331959 + MIR SINE MIR 159 242 -20 282 29 0 0 chr12 51454770 51454805 -92331650 + (TG)n Simple_repeat Simple_repeat 1 35 0 249 273 52 0 chr12 51454925 51455002 -92331453 + MIR SINE MIR 33 113 -149 187 305 67 43 chr12 51455548 51455712 -92330743 - L2 LINE L2 -155 3117 2950 2347 105 0 0 chr12 51455793 51456098 -92330357 - AluSx SINE Alu -3 309 5 624 251 91 12 chr12 51456223 51456466 -92329989 + MIR SINE MIR 1 262 0 3487 107 77 20 chr12 51456492 51457091 -92329364 + LTR10E LTR ERV1 1 633 0 2370 99 3 10 chr12 51457472 51457786 -92328669 + AluSp SINE Alu 2 313 0 2287 132 0 0 chr12 51457797 51458108 -92328347 + AluSx SINE Alu 1 311 -1 817 226 16 0 chr12 51458186 51458372 -92328083 - MER5A DNA MER1_type 0 189 1 206 237 79 66 chr12 51458480 51458556 -92327899 + MER5B DNA MER1_type 92 168 -10 262 250 40 0 chr12 51458888 51458964 -92327491 + MIR SINE MIR 113 191 -71 2022 96 4 0 chr12 51458974 51459224 -92327231 + AluSp SINE Alu 1 251 -62 464 103 230 0 chr12 51459224 51459322 -92327133 + AluSg/x SINE Alu 182 304 0 2433 91 0 3 chr12 51459362 51459669 -92326786 - AluSg SINE Alu -4 306 1 231 309 117 0 chr12 51459971 51460065 -92326390 + MIR SINE MIR 47 151 -111 34 0 0 0 chr12 51460353 51460387 -92326068 + AT_rich Low_complexity Low_complexity 1 34 0 595 179 77 0 chr12 51460392 51460509 -92325946 + AluJo/FLAM SINE Alu 1 126 -176 1930 127 10 13 chr12 51460509 51460809 -92325646 - AluSx SINE Alu -13 299 1 372 88 0 0 chr12 51461823 51461880 -92324575 + (CA)n Simple_repeat Simple_repeat 2 58 0 323 301 24 41 chr12 51463082 51463205 -92323250 + MIR3 SINE MIR 4 124 -84 413 265 18 42 chr12 51463205 51463392 -92323063 + MIR SINE MIR 3 187 -61 2280 93 0 17 chr12 51464502 51464804 -92321651 - AluSx SINE Alu -4 308 12 324 312 7 14 chr12 51465004 51465123 -92321332 + (ATGGTG)n Simple_repeat Simple_repeat 4 123 -20 1794 227 76 55 chr12 51465123 51465704 -92320751 - MLT1E LTR MaLR 0 593 1 324 312 7 14 chr12 51465704 51465725 -92320730 + (ATGGTG)n Simple_repeat Simple_repeat 123 143 0 2174 107 0 21 chr12 51466427 51466718 -92319737 - AluSx SINE Alu -27 285 1 713 327 93 40 chr12 51466764 51467585 -92318870 - L2 LINE L2 -264 3008 2128 247 291 77 34 chr12 51468232 51468349 -92318106 - L2 LINE L2 -11 3302 3181 2419 85 0 3 chr12 51468360 51468655 -92317800 + AluSx SINE Alu 1 294 -18 2446 79 3 3 chr12 51468701 51469004 -92317451 + AluSx SINE Alu 1 303 -9 1642 166 119 35 chr12 51469306 51469735 -92316720 - MLT1C LTR MaLR 0 467 3 378 297 81 9 chr12 51471818 51471929 -92314526 - L2 LINE L2 -1 3271 3153 2572 50 7 3 chr12 51472257 51472555 -92313900 - AluY SINE Alu -12 299 1 952 125 0 0 chr12 51472605 51472741 -92313714 - AluSp/q SINE Alu -12 301 166 719 141 16 8 chr12 51477723 51477844 -92308611 + FLAM_A SINE Alu 5 126 -7 356 245 50 50 chr12 51479827 51479946 -92306509 - MIR SINE MIR -49 213 92 2486 95 0 0 chr12 51479946 51480250 -92306205 + AluSg SINE Alu 1 304 -6 356 245 50 50 chr12 51480250 51480269 -92306186 - MIR SINE MIR -169 93 75 443 228 104 0 chr12 51483703 51483896 -92302559 - AluSx SINE Alu -94 218 6 320 267 69 0 chr12 51483981 51484082 -92302373 + L3 LINE CR1 1345 1452 -125 251 238 0 76 chr12 51484195 51484300 -92302155 - L1MC5 LINE L1 -130 7831 7735 1758 182 7 14 chr12 51484431 51484728 -92301727 + AluJb SINE Alu 2 296 -16 2300 88 3 0 chr12 51484841 51485158 -92301297 - AluSp SINE Alu 0 318 1 22 0 0 0 chr12 51485352 51485374 -92301081 + AT_rich Low_complexity Low_complexity 1 22 0 2174 108 13 3 chr12 51486155 51486460 -92299995 - AluSg SINE Alu -2 308 1 1659 88 154 0 chr12 51486460 51486720 -92299735 - AluSx SINE Alu -2 300 1 260 179 54 18 chr12 51486744 51486800 -92299655 + L2 LINE L2 3213 3270 -2 874 304 112 7 chr12 51486861 51487279 -92299176 + L2 LINE L2 2852 3313 0 2271 110 0 16 chr12 51488434 51488744 -92297711 + AluSc SINE Alu 1 305 -4 207 0 0 0 chr12 51488744 51488767 -92297688 + (TA)n Simple_repeat Simple_repeat 1 23 0 291 301 134 56 chr12 51488840 51489109 -92297346 - L1ME LINE L1 -342 5779 5490 1780 154 63 7 chr12 51491126 51491412 -92295043 + AluSx SINE Alu 1 302 -10 1866 145 54 3 chr12 51491586 51491917 -92294538 - MER7A DNA MER2_type 0 346 1 24 0 0 0 chr12 51493109 51493133 -92293322 + AT_rich Low_complexity Low_complexity 1 24 0 1270 146 0 16 chr12 51493133 51493318 -92293137 - AluJb SINE Alu -130 182 1 2615 55 38 11 chr12 51493459 51493819 -92292636 + THE1C LTR MaLR 1 371 0 210 118 0 0 chr12 51493819 51493853 -92292602 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2390 104 3 0 chr12 51496631 51496939 -92289516 + AluSp SINE Alu 1 309 -4 379 220 73 27 chr12 51496944 51497094 -92289361 + MER104 DNA Tc2 5 161 -19 4005 82 94 28 chr12 51497920 51498385 -92288070 - PABL_A LTR ERV1 0 660 142 2192 91 31 3 chr12 51498385 51498672 -92287783 - AluY SINE Alu -15 296 2 4005 82 94 28 chr12 51498672 51498825 -92287630 - PABL_A LTR ERV1 -518 142 1 203 237 0 0 chr12 51499220 51499258 -92287197 + polypyrimidine Low_complexity Low_complexity 4 41 0 2217 98 0 0 chr12 51499709 51499986 -92286469 - AluSx SINE Alu -18 294 18 585 288 116 0 chr12 51500239 51500454 -92286001 - MIR SINE MIR 0 262 23 223 276 127 86 chr12 51501123 51501344 -92285111 - L3b LINE CR1 -96 1487 1258 218 240 0 0 chr12 51501557 51501607 -92284848 - L2 LINE L2 -2 3311 3262 29 28 0 0 chr12 51502154 51502190 -92284265 + AT_rich Low_complexity Low_complexity 1 36 0 1237 190 0 5 chr12 51502221 51502442 -92284013 - AluJo SINE Alu -92 220 1 2359 81 3 3 chr12 51502452 51502761 -92283694 - AluSc SINE Alu 0 309 1 227 175 35 18 chr12 51502982 51503039 -92283416 + CT-rich Low_complexity Low_complexity 1 58 0 225 305 121 21 chr12 51503085 51503226 -92283229 - MIR SINE MIR 0 262 108 2216 101 0 3 chr12 51503689 51503986 -92282469 + AluSx SINE Alu 1 296 -16 261 271 12 12 chr12 51507861 51507946 -92278509 + C-rich Low_complexity Low_complexity 4 88 0 535 309 173 35 chr12 51508192 51509036 -92277419 + L2 LINE L2 2265 3272 0 319 348 137 25 chr12 51509355 51509677 -92276778 + L2 LINE L2 1119 1476 -1838 581 291 69 57 chr12 51510255 51510661 -92275794 + L2 LINE L2 2360 2770 -544 274 274 103 34 chr12 51511286 51511403 -92275052 + MIR SINE MIR 88 212 -50 222 258 32 0 chr12 51511830 51511892 -92274563 + GA-rich Low_complexity Low_complexity 1 64 0 205 333 26 35 chr12 51511925 51512039 -92274416 - MIR SINE MIR -54 208 96 375 278 42 78 chr12 51513475 51513666 -92272789 - MIR SINE MIR -2 260 77 476 244 13 18 chr12 51513794 51513945 -92272510 - MIR SINE MIR -62 146 46 183 254 18 18 chr12 51516195 51516250 -92270205 - MIR SINE MIR -162 100 46 232 227 18 27 chr12 51518207 51518317 -92268138 + (CGG)n Simple_repeat Simple_repeat 2 110 0 204 106 64 0 chr12 51518385 51518432 -92268023 + (CGGG)n Simple_repeat Simple_repeat 2 51 0 32 57 0 0 chr12 51518517 51518570 -92267885 + GC_rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr12 51518898 51518927 -92267528 + GC_rich Low_complexity Low_complexity 1 29 0 328 287 99 81 chr12 51519375 51519738 -92266717 - L1M4c LINE L1 -4906 1466 947 260 93 23 0 chr12 51520004 51520047 -92266408 + MIR SINE MIR 205 248 -14 223 218 244 13 chr12 51520808 51520886 -92265569 - MIR SINE MIR -70 138 43 214 364 12 55 chr12 51521353 51521518 -92264937 - L2 LINE L2 -12 3301 3144 394 330 65 30 chr12 51521852 51522052 -92264403 + MIR SINE MIR 13 219 -43 275 255 181 11 chr12 51523224 51523318 -92263137 + MIR3 SINE MIR 15 124 -84 745 265 139 0 chr12 51525005 51525220 -92261235 + MIR SINE MIR 16 260 -2 398 296 52 0 chr12 51525211 51525346 -92261109 - MIR SINE MIR -2 260 119 * 202 294 15 15 chr12 51526398 51526466 -92259989 + L3b LINE CR1 1317 1384 -199 225 297 133 10 chr12 51527122 51527313 -92259142 + MIR SINE MIR 16 191 -71 220 316 127 0 chr12 51527656 51527735 -92258720 - L3b LINE CR1 -194 1389 1301 1661 160 73 0 chr12 51527818 51528106 -92258349 + AluSx SINE Alu 1 309 -3 211 232 0 18 chr12 51528887 51528943 -92257512 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 514 265 86 0 chr12 51530202 51530353 -92256102 + MIR SINE MIR 99 262 0 323 213 27 0 chr12 51530892 51530967 -92255488 - MIR SINE MIR -87 121 45 354 290 32 0 chr12 51531004 51531097 -92255358 + MIR SINE MIR 112 207 -55 180 200 0 0 chr12 51531164 51531204 -92255251 + GA-rich Low_complexity Low_complexity 3 42 0 276 276 11 23 chr12 51531225 51531312 -92255143 + L2 LINE L2 3193 3278 -35 1767 108 24 16 chr12 51531533 51531784 -92254671 - AluSg SINE Alu -57 253 1 192 330 34 23 chr12 51531914 51532002 -92254453 + MIR SINE MIR 33 121 -141 288 303 123 19 chr12 51532202 51532364 -92254091 - MIR3 SINE MIR -1 207 29 589 92 0 110 chr12 51532603 51532676 -92253779 + L1MB3 LINE L1 6072 6131 -52 2339 74 7 0 chr12 51532676 51532972 -92253483 + AluSp SINE Alu 1 298 -15 589 92 0 110 chr12 51532972 51533007 -92253448 + L1MB3 LINE L1 6131 6168 -15 1660 159 48 17 chr12 51533009 51533304 -92253151 + AluJb SINE Alu 1 304 -8 1061 227 43 23 chr12 51533306 51533606 -92252849 - HsTC2 DNA Tc2 -148 1750 1269 * 1270 212 24 3 chr12 51533603 51533896 -92252559 - HsTC2 DNA Tc2 -1385 513 215 769 220 20 30 chr12 51534057 51534257 -92252198 - MIR SINE MIR -34 228 31 542 152 0 45 chr12 51534845 51534977 -92251478 - MER53 DNA DNA 0 189 64 440 306 34 0 chr12 51535008 51535155 -92251300 - MIR SINE MIR -73 189 38 606 309 39 54 chr12 51535395 51535510 -92250945 + L2 LINE L2 2890 3005 -267 659 241 127 4 chr12 51535510 51535589 -92250866 + MER112 DNA MER1_type 1 69 -187 183 80 0 0 chr12 51535589 51535614 -92250841 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 659 241 127 4 chr12 51535614 51535762 -92250693 + MER112 DNA MER1_type 69 256 0 606 309 39 54 chr12 51535762 51536035 -92250420 + L2 LINE L2 3005 3272 0 252 343 73 22 chr12 51536286 51536423 -92250032 + L3 LINE CR1 1416 1559 -18 209 282 4 128 chr12 51537348 51537491 -92248964 - MIR SINE MIR -102 106 30 214 302 178 16 chr12 51537509 51537638 -92248817 + L2 LINE L2 3031 3180 -92 219 325 100 0 chr12 51538112 51538232 -92248223 + MIR SINE MIR 10 141 -121 211 299 39 13 chr12 51538302 51538379 -92248076 - L3b LINE CR1 -200 1383 1305 361 239 0 127 chr12 51538428 51538562 -92247893 - L2 LINE L2 0 3313 3197 1146 171 91 4 chr12 51538767 51539031 -92247424 + L1ME3A LINE L1 5582 5868 -316 532 56 0 0 chr12 51539038 51539110 -92247345 - AluSg/q SINE Alu -8 305 234 2322 100 0 0 chr12 51539721 51540022 -92246433 - AluSx SINE Alu -11 301 1 234 91 0 0 chr12 51540915 51540948 -92245507 + (T)n Simple_repeat Simple_repeat 1 33 0 1740 115 0 0 chr12 51540953 51541187 -92245268 - AluSg SINE Alu -76 234 1 336 293 90 24 chr12 51541263 51541430 -92245025 - MIR3 SINE MIR -28 180 3 982 234 57 8 chr12 51541586 51541851 -92244604 + L1ME3A LINE L1 5893 6170 0 348 273 31 130 chr12 51542409 51542702 -92243753 + L2 LINE L2 2932 3195 -77 258 302 52 112 chr12 51543195 51543277 -92243178 - L2 LINE L2 0 3272 3187 2186 102 3 37 chr12 51543277 51543600 -92242855 - AluSq SINE Alu -1 312 1 258 302 52 112 chr12 51543600 51543785 -92242670 - L2 LINE L2 -85 3187 3021 333 219 0 0 chr12 51543860 51543933 -92242522 + L1MB7 LINE L1 4669 4741 -1405 859 158 0 0 chr12 51544007 51544134 -92242321 - FLAM_A SINE Alu -2 131 5 1132 170 48 42 chr12 51544138 51544449 -92242006 + L1MB7 LINE L1 4726 5038 -1108 825 145 0 0 chr12 51544469 51544593 -92241862 + AluJo SINE Alu 11 134 -178 4272 183 26 21 chr12 51544594 51545687 -92240768 + L1MB7 LINE L1 5023 6131 -53 2338 84 0 7 chr12 51545687 51545997 -92240458 + AluSx SINE Alu 1 308 -4 4272 183 26 21 chr12 51545997 51546031 -92240424 + L1MB7 LINE L1 6131 6163 -21 312 148 0 0 chr12 51546032 51546086 -92240369 + MSTB1 LTR MaLR 1 54 -378 2189 134 54 0 chr12 51546136 51546508 -92239947 + MSTB1 LTR MaLR 41 432 0 1938 151 6 3 chr12 51546579 51546700 -92239755 + AluSx SINE Alu 1 120 -192 198 0 0 0 chr12 51546700 51546722 -92239733 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1938 151 6 3 chr12 51546722 51546911 -92239544 + AluSx SINE Alu 120 312 0 401 291 45 15 chr12 51547017 51547151 -92239304 - MIR SINE MIR 0 262 125 258 269 65 11 chr12 51547318 51547411 -92239044 - L2 LINE L2 -41 3231 3134 266 314 23 0 chr12 51547472 51547558 -92238897 + MIR SINE MIR 175 262 0 249 289 16 0 chr12 51547565 51547639 -92238816 - MIR SINE MIR -113 95 20 514 207 15 143 chr12 51547676 51547879 -92238576 - MER69 DNA AcHobo 0 2526 1 227 293 37 0 chr12 51547887 51547969 -92238486 + L3 LINE CR1 1492 1576 -1 1072 242 71 19 chr12 51547988 51548582 -92237873 + Zaphod DNA AcHobo 2 662 -3369 1047 201 26 17 chr12 51548592 51548681 -92237774 + Charlie1 DNA MER1_type 1 88 -2673 2118 156 23 0 chr12 51548681 51549034 -92237421 + MER46B DNA MER2_type 1 236 0 1047 201 26 17 chr12 51549034 51549178 -92237277 + Charlie1 DNA MER1_type 88 236 -2525 503 170 0 102 chr12 51549167 51549314 -92237141 + Charlie1 DNA MER1_type 2623 2754 -7 * 2070 212 90 13 chr12 51549321 51549952 -92236503 + Zaphod DNA AcHobo 3297 3976 -55 2137 94 0 10 chr12 51551132 51551431 -92235024 + AluY SINE Alu 1 296 -15 271 279 0 25 chr12 51551817 51551896 -92234559 + MIR3 SINE MIR 81 157 -51 539 261 0 6 chr12 51552547 51552704 -92233751 - L1MC/D LINE L1 -2305 5503 5348 324 87 0 0 chr12 51552707 51552753 -92233702 + MADE1 DNA Mariner 35 80 0 1199 111 0 61 chr12 51552768 51552946 -92233509 - AluSg/x SINE Alu -15 295 129 1978 118 17 0 chr12 51552946 51553233 -92233222 - AluSx SINE Alu -19 293 2 1199 111 0 61 chr12 51553233 51553252 -92233203 - AluSg/x SINE Alu -181 129 110 642 197 34 48 chr12 51553252 51553399 -92233056 + MIR SINE MIR 116 260 -2 326 320 115 55 chr12 51553492 51553603 -92232852 - L1MC/D LINE L1 -953 5193 5090 674 174 33 0 chr12 51553603 51553724 -92232731 + L1PA16 LINE L1 6042 6166 0 326 320 115 55 chr12 51553724 51553924 -92232531 - L1MC/D LINE L1 -1056 5090 4863 477 325 52 0 chr12 51554051 51554205 -92232250 + MIR3 SINE MIR 41 202 -6 374 202 0 11 chr12 51554589 51554678 -92231777 + (CA)n Simple_repeat Simple_repeat 2 89 0 252 176 0 0 chr12 51554678 51554729 -92231726 - MER4-int LTR ERV1 -5436 1162 1112 180 176 0 0 chr12 51554731 51554765 -92231690 + (CA)n Simple_repeat Simple_repeat 1 34 0 345 267 267 17 chr12 51554790 51554970 -92231485 + MIR SINE MIR 13 237 -25 889 151 67 17 chr12 51555482 51555661 -92230794 - MER53 DNA DNA -1 188 1 404 246 171 39 chr12 51556709 51557018 -92229437 + L2 LINE L2 2832 3181 -132 189 213 67 80 chr12 51557455 51557530 -92228925 + L2 LINE L2 3173 3246 -26 200 335 48 30 chr12 51557964 51558131 -92228324 + L2 LINE L2 2811 2980 -292 617 259 80 9 chr12 51558193 51558405 -92228050 + MIR SINE MIR 34 260 -2 274 131 49 0 chr12 51558561 51558622 -92227833 + CT-rich Low_complexity Low_complexity 3 66 0 932 122 11 17 chr12 51558627 51558807 -92227648 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 212 226 16 0 chr12 51558815 51558877 -92227578 + CT-rich Low_complexity Low_complexity 2 64 0 1196 147 24 79 chr12 51558914 51559166 -92227289 - AluJo SINE Alu -35 277 40 951 240 8 40 chr12 51559482 51559732 -92226723 + MIR SINE MIR 21 262 0 482 252 28 42 chr12 51559721 51559864 -92226591 - MIR SINE MIR -101 161 21 * 2213 96 0 3 chr12 51559949 51560250 -92226205 + AluSg SINE Alu 1 300 -10 475 152 54 45 chr12 51560260 51560372 -92226083 + L1MC5 LINE L1 6910 7022 -939 497 176 40 32 chr12 51560396 51560521 -92225934 + L1MC5 LINE L1 7394 7519 -442 2073 128 0 0 chr12 51560521 51560825 -92225630 + AluSx SINE Alu 1 304 -8 997 106 0 7 chr12 51560834 51560976 -92225479 + AluJo SINE Alu 6 146 -166 1316 203 88 29 chr12 51560996 51561404 -92225051 + L1MC5 LINE L1 7508 7939 -22 453 246 69 69 chr12 51561517 51561650 -92224805 - MIR SINE MIR -21 241 106 1588 174 3 26 chr12 51561650 51561955 -92224500 + AluJb SINE Alu 1 298 -14 453 246 69 69 chr12 51561955 51561996 -92224459 - MIR SINE MIR -155 107 67 219 36 0 0 chr12 51562408 51562436 -92224019 + (TG)n Simple_repeat Simple_repeat 2 29 0 304 353 38 30 chr12 51562760 51562893 -92223562 - L2 LINE L2 0 3272 3139 1363 175 32 45 chr12 51563137 51563178 -92223277 - MER33 DNA MER1_type -2275 310 270 1664 140 0 35 chr12 51563178 51563463 -92222992 + AluJb SINE Alu 1 275 -37 378 0 0 0 chr12 51563469 51563511 -92222944 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1363 175 32 45 chr12 51563511 51563776 -92222679 - MER33 DNA MER1_type -2320 265 1 368 240 50 0 chr12 51564229 51564329 -92222126 + L1ME4a LINE L1 5960 6064 -57 1945 145 0 16 chr12 51564356 51564673 -92221782 - AluJo SINE Alu 0 312 1 2264 83 0 3 chr12 51564712 51565002 -92221453 - AluSg SINE Alu -21 289 1 1706 111 4 43 chr12 51565121 51565400 -92221055 - AluSx SINE Alu -44 268 1 1795 164 7 7 chr12 51565407 51565717 -92220738 - AluSx SINE Alu -2 310 1 255 211 0 101 chr12 51565717 51565826 -92220629 - L1MC5 LINE L1 -130 7831 7734 1606 182 7 14 chr12 51565953 51566250 -92220205 + AluJb SINE Alu 2 296 -16 2147 88 3 0 chr12 51566363 51566680 -92219775 - AluSp SINE Alu 0 318 1 22 0 0 0 chr12 51566874 51566896 -92219559 + AT_rich Low_complexity Low_complexity 1 22 0 2015 108 13 3 chr12 51567677 51567982 -92218473 - AluSg SINE Alu -2 308 1 1722 88 153 4 chr12 51567982 51568243 -92218212 - AluSx SINE Alu -2 300 1 279 179 54 18 chr12 51568267 51568323 -92218132 + L2 LINE L2 3213 3270 -2 959 298 115 12 chr12 51568384 51568803 -92217652 + L2 LINE L2 2852 3313 0 1867 126 0 23 chr12 51569958 51570260 -92216195 + AluSg SINE Alu 1 295 -15 235 57 0 0 chr12 51570260 51570295 -92216160 + L1MB2 LINE L1 6122 6156 -15 1590 142 51 18 chr12 51570297 51570571 -92215884 + AluJb SINE Alu 1 283 -29 1207 230 42 23 chr12 51570585 51570894 -92215561 - HsTC2 DNA Tc2 -139 1759 1269 * 1410 207 23 10 chr12 51570891 51571190 -92215265 - HsTC2 DNA Tc2 -1385 513 211 833 225 20 30 chr12 51571345 51571545 -92214910 - MIR SINE MIR -34 228 31 611 152 0 45 chr12 51572133 51572265 -92214190 - MER53 DNA DNA 0 189 64 447 247 22 72 chr12 51572300 51572453 -92214002 - MIR SINE MIR -63 145 40 592 309 39 54 chr12 51572683 51572798 -92213657 + L2 LINE L2 2890 3005 -267 589 237 127 4 chr12 51572798 51572877 -92213578 + MER112 DNA MER1_type 1 69 -187 183 80 0 0 chr12 51572877 51572902 -92213553 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 589 237 127 4 chr12 51572902 51573050 -92213405 + MER112 DNA MER1_type 69 256 0 592 309 39 54 chr12 51573050 51573323 -92213132 + L2 LINE L2 3005 3272 0 227 343 73 22 chr12 51573574 51573711 -92212744 + L3 LINE CR1 1416 1559 -18 229 233 18 142 chr12 51574636 51574779 -92211676 - MIR SINE MIR -102 106 30 212 302 178 16 chr12 51574797 51574926 -92211529 + L2 LINE L2 3031 3180 -92 186 325 100 0 chr12 51575400 51575520 -92210935 + MIR SINE MIR 10 141 -121 201 299 39 13 chr12 51575590 51575667 -92210788 - L3b LINE CR1 -200 1383 1305 410 241 0 117 chr12 51575716 51575861 -92210594 - L2 LINE L2 0 3313 3186 1285 174 91 4 chr12 51576056 51576320 -92210135 + L1MB7 LINE L1 5582 5868 -316 198 0 0 0 chr12 51576327 51576349 -92210106 + (T)n Simple_repeat Simple_repeat 1 22 0 661 195 0 0 chr12 51576449 51576562 -92209893 - FLAM_A SINE Alu -29 113 1 1989 76 69 17 chr12 51576797 51577087 -92209368 + AluSc SINE Alu 3 307 -2 783 232 30 88 chr12 51577334 51577442 -92209013 + MER63B DNA MER1_type 2 115 -947 1639 117 76 8 chr12 51577442 51577726 -92208729 + AluSq SINE Alu 1 302 0 2173 107 3 0 chr12 51577726 51578025 -92208430 + AluSp SINE Alu 1 300 -13 783 232 30 88 chr12 51578025 51578159 -92208296 + MER63B DNA MER1_type 114 254 -808 2078 91 0 67 chr12 51578159 51578488 -92207967 + AluSc SINE Alu 1 307 -2 351 0 0 0 chr12 51578488 51578527 -92207928 + (TA)n Simple_repeat Simple_repeat 2 40 0 783 232 30 88 chr12 51578527 51578543 -92207912 + MER63B DNA MER1_type 234 249 -187 343 285 0 81 chr12 51578683 51578869 -92207586 - L1ME LINE L1 -461 5660 5490 1633 154 63 7 chr12 51580886 51581172 -92205283 + AluSx SINE Alu 1 302 -10 1970 145 54 3 chr12 51581346 51581677 -92204778 - MER7A DNA MER2_type 0 346 1 24 0 0 0 chr12 51582868 51582892 -92203563 + AT_rich Low_complexity Low_complexity 1 24 0 1134 145 0 17 chr12 51582892 51583071 -92203384 - AluJb SINE Alu -130 182 7 293 263 0 54 chr12 51583193 51583379 -92203076 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 533 132 44 7 chr12 51583412 51583548 -92202907 + GA-rich Low_complexity Low_complexity 1 141 0 378 0 0 0 chr12 51583550 51583592 -92202863 + (TG)n Simple_repeat Simple_repeat 2 43 0 2303 77 0 0 chr12 51584432 51584729 -92201726 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 51585160 51585183 -92201272 + AT_rich Low_complexity Low_complexity 1 23 0 191 311 286 0 chr12 51585432 51585551 -92200904 + MIR3 SINE MIR 45 197 -11 417 213 100 100 chr12 51587218 51587436 -92199019 - L1M4 LINE L1 -2730 3416 3199 1703 154 0 14 chr12 51587436 51587721 -92198734 + AluJb SINE Alu 1 281 -31 234 0 0 0 chr12 51587725 51587751 -92198704 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2026 129 3 0 chr12 51587751 51588053 -92198402 + AluSx SINE Alu 1 303 -9 417 213 100 100 chr12 51588053 51588128 -92198327 - L1M4 LINE L1 -2948 3198 3117 724 162 17 0 chr12 51588144 51588261 -92198194 - FLAM_C SINE Alu -23 120 2 483 273 67 73 chr12 51588403 51588733 -92197722 - L1M4 LINE L1 -3334 2812 2485 1979 148 0 3 chr12 51588825 51589128 -92197327 - AluJb SINE Alu -10 302 1 2232 109 0 3 chr12 51589433 51589746 -92196709 + AluSx SINE Alu 1 312 0 2144 102 10 0 chr12 51590049 51590343 -92196112 + AluSc SINE Alu 1 297 -12 788 174 0 8 chr12 51591241 51591373 -92195082 + FLAM_C SINE Alu 2 132 -11 972 149 0 0 chr12 51591876 51592037 -92194418 - L1MA6 LINE L1 0 6300 6140 310 122 0 0 chr12 51592038 51592079 -92194376 - Alu SINE Alu -254 47 7 448 239 205 0 chr12 51592082 51592199 -92194256 + MER5A DNA MER1_type 48 188 -1 245 294 119 9 chr12 51592199 51592290 -92194165 + MIR SINE MIR 154 256 -6 2310 80 0 13 chr12 51592630 51592943 -92193512 + AluSg SINE Alu 1 309 -1 264 288 0 41 chr12 51592946 51593019 -92193436 + MIR3 SINE MIR 138 207 -1 574 152 0 0 chr12 51593593 51593685 -92192770 + AluJb SINE Alu 209 300 -12 1251 181 142 0 chr12 51593698 51593980 -92192475 - Charlie1b DNA MER1_type -201 322 1 2158 101 0 16 chr12 51594035 51594341 -92192114 - AluSg SINE Alu -9 301 1 2397 34 41 0 chr12 51594594 51594885 -92191570 - AluY SINE Alu -8 303 1 403 261 109 0 chr12 51595160 51595279 -92191176 - MIR SINE MIR 0 262 131 2174 100 0 0 chr12 51596120 51596419 -92190036 + AluSx SINE Alu 1 299 -13 214 268 122 0 chr12 51596443 51596525 -92189930 - L2 LINE L2 -736 2578 2487 1876 121 17 0 chr12 51596663 51596953 -92189502 + AluJb SINE Alu 1 295 -17 2403 47 0 3 chr12 51596998 51597295 -92189160 + AluY SINE Alu 1 296 -15 926 103 0 29 chr12 51597307 51597443 -92189012 + FLAM_C SINE Alu 2 133 0 1415 101 0 5 chr12 51597447 51597645 -92188810 + AluSc SINE Alu 1 197 -112 645 71 12 0 chr12 51597745 51597830 -92188625 + AluSp/q SINE Alu 165 250 -63 999 177 13 18 chr12 51597830 51598056 -92188399 + AluSg/x SINE Alu 85 309 -3 1827 132 13 30 chr12 51598311 51598614 -92187841 + AluJb SINE Alu 1 298 -14 225 0 0 0 chr12 51599298 51599323 -92187132 + (A)n Simple_repeat Simple_repeat 1 25 0 2179 115 0 0 chr12 51599332 51599628 -92186827 - AluSq SINE Alu -17 296 1 1831 141 11 0 chr12 51599638 51599921 -92186534 - AluSx SINE Alu -26 286 1 1824 157 3 3 chr12 51599923 51600222 -92186233 - AluSx SINE Alu -13 299 1 1737 155 0 0 chr12 51600224 51600501 -92185954 - AluJb SINE Alu -21 291 15 833 93 62 31 chr12 51650639 51650768 -92135687 + FLAM_C SINE Alu 1 133 0 420 138 31 0 chr12 51650843 51650908 -92135547 - AluJ/FRAM SINE Alu -25 287 221 841 165 0 0 chr12 51650908 51651035 -92135420 - AluJo/FLAM SINE Alu -174 128 2 1857 164 0 41 chr12 51651089 51651262 -92135193 - AluJb SINE Alu -7 305 143 2378 69 0 7 chr12 51651262 51651558 -92134897 - AluSg SINE Alu -22 288 1 1857 164 0 41 chr12 51651558 51651696 -92134759 - AluJb SINE Alu -169 143 1 1883 163 3 3 chr12 51651848 51652154 -92134301 - AluSx SINE Alu -6 306 1 2398 92 0 0 chr12 51652536 51652830 -92133625 + AluSx SINE Alu 1 294 -18 287 262 58 19 chr12 51652832 51652935 -92133520 - L2 LINE L2 -38 3275 3169 296 313 52 70 chr12 51653079 51653351 -92133104 - L2 LINE L2 -493 2821 2555 25 51 0 0 chr12 51653553 51653592 -92132863 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr12 51653945 51653966 -92132489 + (T)n Simple_repeat Simple_repeat 1 21 0 338 185 0 31 chr12 51653984 51654049 -92132406 - AluSp SINE Alu -123 180 118 259 248 109 15 chr12 51654246 51654383 -92132072 + L1ME LINE L1 5331 5480 -641 1592 189 17 17 chr12 51654390 51654681 -92131774 + AluJo SINE Alu 3 293 -19 1019 174 0 0 chr12 51654877 51655038 -92131417 + FRAM SINE Alu 1 161 -5 198 0 0 0 chr12 51655223 51655245 -92131210 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 1352 185 19 0 chr12 51655663 51655922 -92130533 - L1MB7 LINE L1 -16 6168 5905 2259 108 3 0 chr12 51656048 51656345 -92130110 + AluSx SINE Alu 1 298 -14 2147 128 3 16 chr12 51656447 51656752 -92129703 + AluSx SINE Alu 1 301 -11 226 250 0 0 chr12 51656781 51656829 -92129626 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 2210 99 0 3 chr12 51657831 51658144 -92128311 - AluSq SINE Alu 0 314 3 260 167 0 90 chr12 51659242 51659260 -92127195 + LTR56 LTR ERV1 318 336 -109 2164 101 27 0 chr12 51659260 51659558 -92126897 + AluSx SINE Alu 1 306 -6 2264 105 0 3 chr12 51659566 51659862 -92126593 + AluSp SINE Alu 1 295 -18 260 167 0 90 chr12 51659862 51659912 -92126543 + LTR56 LTR ERV1 343 388 -57 26 30 0 0 chr12 51659915 51659948 -92126507 + AT_rich Low_complexity Low_complexity 1 33 0 316 237 127 104 chr12 51660221 51660394 -92126061 - L2 LINE L2 -173 3099 2923 2125 119 3 3 chr12 51660418 51660712 -92125743 - AluSx SINE Alu -18 294 1 1815 155 0 40 chr12 51661190 51661494 -92124961 - AluJo SINE Alu -16 296 5 2211 105 10 0 chr12 51662392 51662687 -92123768 + AluSx SINE Alu 2 299 -13 297 256 0 24 chr12 51662827 51662909 -92123546 + MIR SINE MIR 183 262 0 189 0 0 0 chr12 51663848 51663869 -92122586 + (T)n Simple_repeat Simple_repeat 1 21 0 1863 149 0 45 chr12 51664545 51664707 -92121748 - AluJo SINE Alu -17 295 152 2182 97 10 3 chr12 51664707 51664995 -92121460 - AluSx SINE Alu -22 290 1 1863 149 0 45 chr12 51664995 51665141 -92121314 - AluJo SINE Alu -160 152 1 596 141 33 0 chr12 51665164 51665256 -92121199 + AluS SINE Alu 2 96 -217 1893 176 3 0 chr12 51665356 51665662 -92120793 + AluSx SINE Alu 1 307 -5 1968 136 6 41 chr12 51665664 51665981 -92120474 + AluJb SINE Alu 1 306 -6 2045 109 0 0 chr12 51665991 51666256 -92120199 + AluSq SINE Alu 35 299 -14 2550 47 0 31 chr12 51667148 51667469 -92118986 + AluY SINE Alu 1 311 0 219 338 0 0 chr12 51667496 51667564 -92118891 + CT-rich Low_complexity Low_complexity 1 68 0 679 221 237 28 chr12 51667568 51667689 -92118766 - L2 LINE L2 -2 3311 3217 2298 103 0 13 chr12 51667689 51668001 -92118454 + AluSx SINE Alu 1 308 -4 679 221 237 28 chr12 51668001 51668315 -92118140 - L2 LINE L2 -96 3217 2702 3014 23 0 6 chr12 51668318 51668668 -92117787 - L1PA5 LINE L1 0 6154 5807 331 71 0 0 chr12 51668677 51668719 -92117736 + AluJ/FLAM SINE Alu 23 64 -238 528 118 0 0 chr12 51668720 51668796 -92117659 + FLAM SINE Alu 42 117 -26 479 253 47 20 chr12 51668824 51668974 -92117481 - L2 LINE L2 -641 2673 2520 782 163 7 15 chr12 51669010 51669145 -92117310 + FLAM_C SINE Alu 8 141 -2 1482 230 165 24 chr12 51669151 51669746 -92116709 - L2 LINE L2 -860 2454 1776 2586 39 3 22 chr12 51669867 51670179 -92116276 + AluY SINE Alu 1 306 -5 245 341 43 58 chr12 51670200 51670408 -92116047 - L2 LINE L2 -167 3105 2901 1997 114 43 4 chr12 51670497 51670777 -92115678 + AluSx SINE Alu 1 291 -21 253 192 72 24 chr12 51670797 51670909 -92115546 + L1P5 LINE L1 5364 5444 -712 1045 90 21 7 chr12 51671392 51671536 -92114919 + AluSg/x SINE Alu 146 291 -21 2250 93 7 3 chr12 51671553 51671842 -92114613 + AluSq SINE Alu 1 290 -23 249 33 0 0 chr12 51671842 51671872 -92114583 + (TA)n Simple_repeat Simple_repeat 2 31 0 2061 131 13 3 chr12 51671876 51672174 -92114281 + AluJb SINE Alu 2 302 -10 229 267 0 11 chr12 51672174 51672264 -92114191 - L1MC4 LINE L1 -1340 6702 6614 507 58 0 58 chr12 51672264 51672367 -92114088 + (TA)n Simple_repeat Simple_repeat 2 98 0 243 88 0 0 chr12 51672828 51672862 -92113593 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 53 0 0 chr12 51673652 51673690 -92112765 + AT_rich Low_complexity Low_complexity 1 38 0 2089 101 35 14 chr12 51673691 51673979 -92112476 - AluSg SINE Alu -16 294 1 207 0 0 0 chr12 51673984 51674007 -92112448 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2423 62 0 3 chr12 51674010 51674301 -92112154 - AluY SINE Alu -21 290 1 1717 177 0 17 chr12 51674303 51674602 -92111853 - AluJb SINE Alu -18 294 1 1762 154 43 27 chr12 51674710 51675009 -92111446 - AluJo SINE Alu -8 304 1 324 0 0 0 chr12 51675120 51675156 -92111299 + (A)n Simple_repeat Simple_repeat 1 36 0 2331 86 0 42 chr12 51675159 51675472 -92110983 + AluSp SINE Alu 1 300 -13 2319 97 13 0 chr12 51675526 51675826 -92110629 + AluSg SINE Alu 1 304 -6 2071 125 7 0 chr12 51675828 51676115 -92110340 + AluSg SINE Alu 1 289 -21 1716 194 3 7 chr12 51676573 51676866 -92109589 - AluJo SINE Alu -20 292 1 2361 97 0 0 chr12 51677042 51677340 -92109115 - AluSx SINE Alu -14 298 1 877 178 87 17 chr12 51677606 51677836 -92108619 - MER63 DNA MER1_type -815 246 1 1343 113 32 0 chr12 51678390 51678575 -92107880 - AluSg/x SINE Alu -17 295 105 2025 146 7 3 chr12 51678576 51678884 -92107571 + AluSx SINE Alu 1 309 -3 1951 149 13 10 chr12 51678944 51679252 -92107203 - AluSx SINE Alu -3 309 1 2329 104 16 0 chr12 51679430 51679737 -92106718 + AluSx SINE Alu 1 312 0 2374 89 0 26 chr12 51680329 51680642 -92105813 + AluSq SINE Alu 1 305 -8 1677 151 21 25 chr12 51680651 51680963 -92105492 + AluJo SINE Alu 1 311 0 180 0 0 0 chr12 51681083 51681103 -92105352 + (CA)n Simple_repeat Simple_repeat 2 21 0 2089 114 0 52 chr12 51682095 51682419 -92104036 - AluSx SINE Alu -5 307 1 287 267 53 40 chr12 51682684 51682834 -92103621 + MIR SINE MIR 43 194 -68 243 0 0 0 chr12 51683314 51683341 -92103114 + (CA)n Simple_repeat Simple_repeat 1 27 0 2013 109 4 0 chr12 51683816 51684081 -92102374 + AluSg SINE Alu 1 266 -44 180 0 0 0 chr12 51684081 51684101 -92102354 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2245 42 11 21 chr12 51684744 51685058 -92101397 - AluY SINE Alu 0 315 5 1511 149 73 43 chr12 51685341 51685643 -92100812 - AluJb SINE Alu -1 311 1 2662 42 7 3 chr12 51686062 51686370 -92100085 + AluY SINE Alu 1 309 -2 324 116 0 0 chr12 51687252 51687295 -92099160 + tRNA-Gly-GGA tRNA tRNA 1 43 -32 1870 130 4 11 chr12 51687386 51687656 -92098799 - AluSx SINE Alu -12 300 33 1712 128 0 0 chr12 51687752 51687979 -92098476 + AluSp SINE Alu 1 227 -86 1980 138 0 7 chr12 51688127 51688416 -92098039 + AluSq SINE Alu 7 293 -20 755 172 0 0 chr12 51688443 51688559 -92097896 - FLAM_C SINE Alu -17 116 1 1008 104 14 7 chr12 51689015 51689159 -92097296 + AluSg/x SINE Alu 133 277 -35 948 164 88 0 chr12 51692050 51692221 -92094234 - LTR47A LTR ERVL -6 446 261 2331 92 0 0 chr12 51693764 51694074 -92092381 + AluSg SINE Alu 1 310 0 1928 151 3 0 chr12 51694234 51694533 -92091922 - AluSx SINE Alu -12 300 1 2412 96 3 0 chr12 51695059 51695362 -92091093 - AluSg SINE Alu -6 304 1 2311 97 0 0 chr12 51695673 51695972 -92090483 - AluSg SINE Alu -11 299 1 200 336 67 0 chr12 51697523 51697642 -92088813 - L3 LINE CR1 -5 1572 1446 200 322 56 0 chr12 51697645 51697735 -92088720 - L3 LINE CR1 -174 1403 1309 2420 92 0 0 chr12 51697760 51698063 -92088392 - AluY SINE Alu -8 303 1 1182 157 120 62 chr12 51698303 51698408 -92088047 + AluJo SINE Alu 14 111 -201 2038 99 4 15 chr12 51698408 51698568 -92087887 - AluSx SINE Alu -19 293 136 2118 131 7 0 chr12 51698568 51698874 -92087581 - AluSx SINE Alu -4 308 1 2038 99 4 15 chr12 51698874 51698986 -92087469 - AluSx SINE Alu -176 136 24 1182 157 120 62 chr12 51698986 51699154 -92087301 + AluJo SINE Alu 111 303 -9 266 119 0 24 chr12 51699155 51699197 -92087258 + Alu SINE Alu 1 41 -261 1550 111 0 0 chr12 51699332 51699530 -92086925 - AluSc SINE Alu -111 198 1 1649 159 60 26 chr12 51699949 51700251 -92086204 + AluJb SINE Alu 1 312 0 2145 119 0 3 chr12 51700527 51700837 -92085618 + AluSx SINE Alu 1 309 0 1683 164 17 14 chr12 51701018 51701310 -92085145 - AluJo SINE Alu -19 293 1 2226 112 3 0 chr12 51701378 51701683 -92084772 - AluSx SINE Alu -4 308 3 23 33 0 0 chr12 51702044 51702074 -92084381 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr12 51703980 51704007 -92082448 + (GGGAGA)n Simple_repeat Simple_repeat 4 30 0 2086 133 0 0 chr12 51704528 51704830 -92081625 + AluSg SINE Alu 1 302 -8 2338 90 0 0 chr12 51705081 51705380 -92081075 + AluSx SINE Alu 1 299 -13 302 294 0 0 chr12 51705965 51706050 -92080405 + L1ME4a LINE L1 5819 5903 -218 1112 152 0 13 chr12 51706063 51706221 -92080234 - AluJo/FRAM SINE Alu -10 292 137 2463 82 3 0 chr12 51706222 51706527 -92079928 - AluSp SINE Alu -7 306 1 22 0 0 0 chr12 51706561 51706583 -92079872 + AT_rich Low_complexity Low_complexity 1 22 0 1981 133 31 0 chr12 51706883 51707169 -92079286 - AluSx SINE Alu -17 295 1 279 188 132 51 chr12 51707249 51707353 -92079102 - L1MC/D LINE L1 -858 5445 5357 1724 149 22 4 chr12 51707353 51707663 -92078792 - AluJb SINE Alu 0 319 5 279 188 132 51 chr12 51707663 51707693 -92078762 - L1MC/D LINE L1 -946 5357 5331 2171 98 7 7 chr12 51707886 51708183 -92078272 + AluSc SINE Alu 3 299 -10 1345 91 11 0 chr12 51708183 51708358 -92078097 + AluSg/x SINE Alu 134 310 -2 189 74 0 0 chr12 51708358 51708385 -92078070 + (TA)n Simple_repeat Simple_repeat 1 27 0 2128 146 87 8 chr12 51708388 51708758 -92077697 - LTR24 LTR ERV1 -35 432 34 1821 161 55 0 chr12 51708770 51709061 -92077394 - AluJb SINE Alu -5 307 1 2277 89 0 16 chr12 51711941 51712269 -92074186 - AluSg SINE Alu 0 324 2 2503 59 0 3 chr12 51712345 51712650 -92073805 + AluY SINE Alu 1 304 -7 1932 138 7 3 chr12 51712659 51712949 -92073506 + AluSc SINE Alu 1 291 -18 341 289 161 17 chr12 51712950 51713130 -92073325 - L2 LINE L2 -84 3229 3024 317 189 0 54 chr12 51713190 51713299 -92073156 - AluSx SINE Alu 0 301 232 1518 108 0 0 chr12 51713299 51713494 -92072961 - AluSx SINE Alu -117 195 1 342 0 0 0 chr12 51713862 51713900 -92072555 + (T)n Simple_repeat Simple_repeat 1 38 0 808 148 8 8 chr12 51714285 51714407 -92072048 - FRAM SINE Alu -14 162 41 354 100 0 0 chr12 51715370 51715420 -92071035 + 5S rRNA rRNA 1 50 -71 332 188 129 20 chr12 51715734 51715835 -92070620 + MIR SINE MIR 90 201 -61 2118 112 0 45 chr12 51715843 51716019 -92070436 - AluSx SINE Alu -13 299 142 2298 93 0 19 chr12 51716019 51716330 -92070125 - AluSg SINE Alu -5 305 1 2118 112 0 45 chr12 51716330 51716466 -92069989 - AluSx SINE Alu -170 142 1 2144 139 7 0 chr12 51717060 51717370 -92069085 + AluJb SINE Alu 1 312 0 2509 89 0 0 chr12 51717879 51718182 -92068273 + AluSg SINE Alu 1 303 -7 299 310 108 35 chr12 51718356 51718614 -92067841 + L2 LINE L2 2544 2820 -494 300 253 126 11 chr12 51718795 51718890 -92067565 + MER5A DNA MER1_type 1 106 -83 1076 140 0 13 chr12 51718917 51719067 -92067388 + FRAM SINE Alu 1 148 -18 22 0 0 0 chr12 51719068 51719090 -92067365 + AT_rich Low_complexity Low_complexity 1 22 0 984 218 110 45 chr12 51719090 51719527 -92066928 + MLT1G1 LTR MaLR 10 529 -66 2174 104 0 17 chr12 51719532 51719856 -92066599 - AluSx SINE Alu 0 319 1 889 201 54 44 chr12 51719925 51720129 -92066326 + MER3 DNA MER1_type 4 209 0 27 49 0 0 chr12 51720290 51720331 -92066124 + AT_rich Low_complexity Low_complexity 1 41 0 418 262 103 0 chr12 51720825 51720932 -92065523 + MIR3 SINE MIR 82 199 -9 248 302 70 23 chr12 51721224 51721353 -92065102 + MIR SINE MIR 77 211 -51 2016 125 30 23 chr12 51721937 51722241 -92064214 + AluSq SINE Alu 1 306 -7 1540 112 164 19 chr12 51722248 51722516 -92063939 + AluJo SINE Alu 1 307 -5 232 266 138 0 chr12 51722774 51722868 -92063587 + MIR SINE MIR 146 252 -10 2243 105 0 13 chr12 51723266 51723571 -92062884 + AluSx SINE Alu 1 301 -11 197 373 97 53 chr12 51723935 51724163 -92062292 - L2 LINE L2 -93 3179 2942 2339 88 7 3 chr12 51724225 51724530 -92061925 + AluSq SINE Alu 1 306 -7 503 277 89 30 chr12 51725212 51725414 -92061041 - MIR SINE MIR -38 224 11 2250 108 3 7 chr12 51725672 51725979 -92060476 + AluSx SINE Alu 1 306 -6 199 335 67 22 chr12 51726096 51726275 -92060180 - L2 LINE L2 -784 2530 2344 423 261 127 14 chr12 51726299 51726441 -92060014 - MIR3 SINE MIR -30 178 21 1518 108 0 0 chr12 51726705 51726900 -92059555 + AluSx SINE Alu 1 195 -117 317 189 0 54 chr12 51726900 51727009 -92059446 + AluSx SINE Alu 233 302 0 1849 146 26 16 chr12 51727200 51727553 -92058902 + AluJb SINE Alu 1 356 0 2367 77 0 20 chr12 51727821 51728121 -92058334 - AluSg SINE Alu -16 294 1 668 200 0 0 chr12 51728167 51728272 -92058183 - U6 snRNA snRNA -2 105 1 2171 227 105 57 chr12 51728274 51729177 -92057278 - L1MD3 LINE L1 -11 7984 7038 409 186 0 0 chr12 51729208 51729267 -92057188 - FLAM SINE Alu -25 118 60 3668 84 25 2 chr12 51729267 51729753 -92056702 + LTR3b LTR ERVK 2 498 -2 461 149 0 15 chr12 51729753 51729820 -92056635 - AluJ/FLAM SINE Alu -245 67 2 2176 192 44 91 chr12 51729821 51730228 -92056227 - L1MD3 LINE L1 -944 7051 6626 198 0 0 0 chr12 51730228 51730250 -92056205 + (TG)n Simple_repeat Simple_repeat 1 22 0 1644 152 15 8 chr12 51730260 51730524 -92055931 - AluJb SINE Alu -46 266 1 2176 192 44 91 chr12 51730524 51730567 -92055888 - L1MD3 LINE L1 -1378 6617 6574 2481 82 0 0 chr12 51730567 51730873 -92055582 - AluSc SINE Alu -3 306 1 2176 192 44 91 chr12 51730873 51731004 -92055451 - L1MD3 LINE L1 -1421 6574 6486 2402 88 0 3 chr12 51732071 51732376 -92054079 - AluSq SINE Alu -9 304 1 209 250 87 43 chr12 51732752 51732844 -92053611 + MIR SINE MIR 6 101 -161 2371 61 3 3 chr12 51732970 51733263 -92053192 - AluY SINE Alu -2 309 17 181 292 0 56 chr12 51733483 51733555 -92052900 + L2 LINE L2 3011 3078 -194 995 179 6 6 chr12 51733602 51733758 -92052697 - FRAM SINE Alu -10 156 1 261 235 88 0 chr12 51733779 51733847 -92052608 + L2 LINE L2 3235 3308 -5 492 254 30 22 chr12 51734211 51734345 -92052110 - MER5A DNA MER1_type 0 189 55 1572 183 47 0 chr12 51734419 51734541 -92051914 + AluJo SINE Alu 1 116 -196 510 17 0 0 chr12 51734541 51734600 -92051855 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1572 183 47 0 chr12 51734600 51734751 -92051704 + AluJo SINE Alu 116 287 -25 432 281 61 9 chr12 51735207 51735321 -92051134 + MIR3 SINE MIR 35 154 -54 725 235 66 37 chr12 51735322 51735565 -92050890 - MER112 DNA MER1_type -1 259 10 2427 148 29 8 chr12 51735565 51735712 -92050743 + L1MB8 LINE L1 5493 5635 -543 261 0 0 0 chr12 51735712 51735741 -92050714 + (TG)n Simple_repeat Simple_repeat 2 30 0 488 77 0 39 chr12 51735742 51735846 -92050609 + (TA)n Simple_repeat Simple_repeat 1 100 0 2427 148 29 8 chr12 51735846 51736310 -92050145 + L1MB8 LINE L1 5634 6169 -9 457 267 207 0 chr12 51736467 51736617 -92049838 + MIR SINE MIR 51 231 -31 1931 156 10 3 chr12 51736797 51737099 -92049356 + AluJb SINE Alu 1 304 -8 2381 81 7 0 chr12 51737166 51737461 -92048994 + AluSp SINE Alu 1 297 -16 21 57 0 0 chr12 51737515 51737550 -92048905 + AT_rich Low_complexity Low_complexity 1 35 0 708 192 8 0 chr12 51738139 51738269 -92048186 - MIR SINE MIR -28 234 104 858 287 98 34 chr12 51738351 51738823 -92047632 - L1MC4a LINE L1 -651 5515 5355 2055 105 0 46 chr12 51738825 51738988 -92047467 - AluSx SINE Alu -16 296 152 2396 81 0 7 chr12 51738988 51739297 -92047158 - AluY SINE Alu -4 307 1 2055 105 0 46 chr12 51739297 51739439 -92047016 - AluSx SINE Alu -160 152 5 2345 100 0 0 chr12 51739454 51739744 -92046711 - AluSc SINE Alu -19 290 1 731 183 8 8 chr12 51739750 51739881 -92046574 - FLAM_C SINE Alu -2 131 1 647 225 15 58 chr12 51740431 51740521 -92045934 - MIR SINE MIR -15 247 155 216 0 0 0 chr12 51740521 51740545 -92045910 + (TTA)n Simple_repeat Simple_repeat 2 25 0 926 111 0 0 chr12 51740548 51740665 -92045790 - FLAM_C SINE Alu -16 117 1 647 225 15 58 chr12 51740665 51740806 -92045649 - MIR SINE MIR -109 153 23 220 275 116 0 chr12 51740979 51741048 -92045407 + MIR SINE MIR 67 143 -65 494 188 50 149 chr12 51741103 51741284 -92045171 - MIR SINE MIR 0 262 100 2343 89 10 3 chr12 51741567 51741871 -92044584 + AluSp SINE Alu 4 309 -4 2394 85 10 3 chr12 51741879 51742186 -92044269 + AluSp SINE Alu 1 309 -4 1997 152 0 19 chr12 51742243 51742559 -92043896 + AluJb SINE Alu 1 310 -2 2366 63 0 0 chr12 51742756 51743041 -92043414 + AluY SINE Alu 20 304 -7 1020 193 0 0 chr12 51743051 51743212 -92043243 + FRAM SINE Alu 1 161 -5 311 100 20 0 chr12 51743692 51743742 -92042713 + L2 LINE L2 3262 3312 -1 2484 69 0 7 chr12 51744234 51744537 -92041918 + AluSp SINE Alu 1 301 -12 2469 66 0 10 chr12 51744692 51744994 -92041461 + AluY SINE Alu 1 299 -12 1143 92 0 0 chr12 51745039 51745181 -92041274 - AluSq/x SINE Alu -171 142 1 255 248 78 20 chr12 51745314 51745436 -92041019 + MIR SINE MIR 94 223 -39 976 254 81 60 chr12 51746138 51746230 -92040225 - L2 LINE L2 0 3313 3224 1969 131 7 3 chr12 51746230 51746520 -92039935 + AluSc SINE Alu 1 291 -18 976 254 81 60 chr12 51746520 51746812 -92039643 - L2 LINE L2 -89 3224 2921 2056 114 7 36 chr12 51747001 51747309 -92039146 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 51747522 51747544 -92038911 + AT_rich Low_complexity Low_complexity 1 22 0 258 316 62 31 chr12 51747544 51747737 -92038718 - L2 LINE L2 -237 3035 2837 472 341 17 6 chr12 51747827 51748000 -92038455 - MER5A DNA MER1_type -14 175 1 2159 119 3 0 chr12 51748515 51748809 -92037646 + AluSx SINE Alu 1 295 -17 375 340 92 0 chr12 51749426 51749579 -92036876 - MIR3 SINE MIR -38 170 4 241 175 143 0 chr12 51749812 51749875 -92036580 + L1ME4a LINE L1 5355 5426 -695 1008 111 7 7 chr12 51749921 51750065 -92036390 + AluSq/x SINE Alu 1 144 -168 2327 69 0 7 chr12 51750065 51750353 -92036102 + AluY SINE Alu 1 286 -25 1138 218 112 70 chr12 51750364 51750920 -92035535 + L1ME4a LINE L1 5483 6067 -54 2355 106 3 0 chr12 51750920 51751231 -92035224 - AluSx SINE Alu 0 312 1 1138 218 112 70 chr12 51751231 51751274 -92035181 + L1ME4a LINE L1 6067 6107 -14 33 25 0 0 chr12 51751274 51751314 -92035141 + AT_rich Low_complexity Low_complexity 1 40 0 2665 35 0 13 chr12 51752071 51752384 -92034071 - AluY SINE Alu -2 309 1 187 308 208 0 chr12 51753834 51753954 -92032501 + L2 LINE L2 3127 3271 -1 897 114 0 8 chr12 51754460 51754591 -92031864 - FLAM_C SINE Alu -3 130 1 28 48 0 0 chr12 51755452 51755494 -92030961 + GC_rich Low_complexity Low_complexity 1 42 0 460 254 88 63 chr12 51756349 51756554 -92029901 - MER93a LTR ERV1 -58 344 135 2173 102 0 0 chr12 51756580 51756883 -92029572 + AluSx SINE Alu 1 303 -9 483 171 11 0 chr12 51757199 51757287 -92029168 - MER63 DNA MER1_type -39 1021 933 838 214 0 6 chr12 51757293 51757466 -92028989 + AluJo SINE Alu 121 292 -20 1228 156 66 16 chr12 51757471 51757727 -92028728 - MER63 DNA MER1_type -144 917 649 743 167 7 49 chr12 51757732 51757876 -92028579 - MER58B DNA MER1_type -5 336 199 1643 143 13 40 chr12 51757876 51758176 -92028279 + AluJb SINE Alu 1 292 -20 2097 96 0 48 chr12 51758470 51758782 -92027673 + AluSg SINE Alu 1 297 -13 729 147 9 9 chr12 51758948 51759057 -92027398 - FLAM_C SINE Alu -33 110 2 2196 92 7 7 chr12 51759098 51759403 -92027052 - AluSx SINE Alu -7 305 1 557 115 115 19 chr12 51759434 51759538 -92026917 + LTR9B LTR ERV1 445 558 -86 231 88 0 0 chr12 51759538 51759572 -92026883 + (CA)n Simple_repeat Simple_repeat 1 34 0 439 250 0 0 chr12 51759621 51759717 -92026738 + FRAM SINE Alu 21 116 -60 876 279 51 53 chr12 51759725 51760082 -92026373 + L1MC/D LINE L1 5470 5819 -355 654 108 0 92 chr12 51760088 51760159 -92026296 + L1MB3 LINE L1 6066 6121 -62 2092 117 3 0 chr12 51760159 51760458 -92025997 + AluSx SINE Alu 1 300 -12 654 108 0 92 chr12 51760458 51760516 -92025939 + L1MB3 LINE L1 6121 6183 0 1655 178 38 3 chr12 51760516 51760836 -92025619 + L1M4 LINE L1 4764 5094 -1052 265 260 0 0 chr12 51760839 51760916 -92025539 + T-rich Low_complexity Low_complexity 1 77 0 465 168 27 130 chr12 51760935 51761028 -92025427 + L1M4 LINE L1 5075 5176 -970 1973 128 0 0 chr12 51761028 51761352 -92025103 + AluSx SINE Alu 1 324 0 465 168 27 130 chr12 51761352 51761380 -92025075 + L1M4 LINE L1 5176 5205 -941 2056 104 29 16 chr12 51761380 51761688 -92024767 + AluSx SINE Alu 1 312 0 465 168 27 130 chr12 51761688 51761749 -92024706 + L1M4 LINE L1 5205 5240 -906 1517 286 170 36 chr12 51761844 51762100 -92024355 - L2 LINE L2 -5 3308 3088 485 145 0 94 chr12 51762100 51762160 -92024295 + L1MA7 LINE L1 6185 6230 -61 1716 170 7 10 chr12 51762160 51762460 -92023995 + AluSx SINE Alu 1 299 -13 485 145 0 94 chr12 51762460 51762516 -92023939 + L1MA7 LINE L1 6230 6290 -1 1657 154 7 0 chr12 51762526 51762800 -92023655 + AluJo SINE Alu 10 286 -22 588 14 0 0 chr12 51762800 51762869 -92023586 + (CATAA)n Simple_repeat Simple_repeat 2 70 0 1517 286 170 36 chr12 51762873 51763871 -92022584 - L2 LINE L2 -232 3081 1885 406 283 33 20 chr12 51763880 51764032 -92022423 - L1MC/D LINE L1 -2028 5780 5627 342 0 0 0 chr12 51764737 51764775 -92021680 + (T)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr12 51764838 51764868 -92021587 + GC_rich Low_complexity Low_complexity 1 30 0 306 151 119 5 chr12 51765961 51766094 -92020361 - HsTC2 DNA Tc2 -3 1895 1691 * 539 234 48 43 chr12 51766092 51766171 -92020284 - HsTC2 DNA Tc2 -1611 287 210 2018 118 3 3 chr12 51766171 51766467 -92019988 + AluSq SINE Alu 1 296 -17 539 234 48 43 chr12 51766467 51766596 -92019859 - HsTC2 DNA Tc2 -1688 210 78 555 257 94 23 chr12 51766662 51766833 -92019622 - MIR SINE MIR -46 216 34 1796 119 34 10 chr12 51766993 51767287 -92019168 - AluSx SINE Alu -11 301 1 213 39 0 0 chr12 51767440 51767466 -92018989 + (T)n Simple_repeat Simple_repeat 1 26 0 1936 95 53 3 chr12 51767818 51768103 -92018352 - AluSq SINE Alu -14 299 1 1836 159 0 0 chr12 51768421 51768717 -92017738 + AluSx SINE Alu 1 296 -16 580 261 0 0 chr12 51769390 51769509 -92016946 + L1MC4a LINE L1 6479 6597 -1211 2144 83 0 26 chr12 51769520 51769822 -92016633 + AluSc SINE Alu 1 294 -15 183 80 0 0 chr12 51769870 51769895 -92016560 + (T)n Simple_repeat Simple_repeat 1 25 0 2031 86 47 10 chr12 51770196 51770497 -92015958 - AluSx SINE Alu 0 312 1 1832 131 46 0 chr12 51770858 51771140 -92015315 - AluSx SINE Alu -17 295 1 297 335 43 62 chr12 51771229 51771438 -92015017 + L2 LINE L2 2901 3105 -167 456 255 39 56 chr12 51771464 51771770 -92014685 - AluY SINE Alu 0 301 1 1049 101 0 0 chr12 51772488 51772626 -92013829 + AluSq/x SINE Alu 5 142 -171 2023 127 3 0 chr12 51772671 51772970 -92013485 - AluSx SINE Alu -12 300 1 609 116 0 0 chr12 51773194 51773280 -92013175 + AluJ/FLAM SINE Alu 2 87 -225 605 289 166 36 chr12 51823497 51824002 -91962453 + L2 LINE L2 1698 2268 -1046 486 298 60 7 chr12 51824067 51824218 -91962237 - MIR3 SINE MIR -11 197 39 593 271 118 10 chr12 51825169 51825372 -91961083 - MIR SINE MIR -18 244 20 2229 121 7 0 chr12 51826506 51826813 -91959642 - AluSx SINE Alu -3 309 1 854 118 0 0 chr12 51826938 51827057 -91959398 - FLAM_C SINE Alu -14 119 1 665 144 29 0 chr12 51827251 51827355 -91959100 + U6 snRNA snRNA 1 107 0 1894 127 49 3 chr12 51827475 51827759 -91958696 + AluJb SINE Alu 1 297 -15 295 279 15 0 chr12 51828453 51828521 -91957934 - L2 LINE L2 -18 3295 3227 348 306 178 18 chr12 51828524 51828805 -91957650 + L2 LINE L2 2974 3299 -14 183 357 65 54 chr12 51829906 51830091 -91956364 - L2 LINE L2 -2 3270 3084 199 233 0 0 chr12 51831151 51831194 -91955261 + MIR SINE MIR 150 192 -70 235 381 102 11 chr12 51831291 51831467 -91954988 + L2 LINE L2 2809 3000 -272 181 183 100 50 chr12 51832599 51832659 -91953796 + MER5A DNA MER1_type 124 186 -3 858 167 75 0 chr12 51832795 51832981 -91953474 - MER46A DNA MER2_type -2 234 35 1129 88 7 7 chr12 51833069 51833216 -91953239 - AluSg/x SINE Alu -13 299 153 931 177 19 56 chr12 51833216 51833431 -91953024 - MLT1H1 LTR MaLR -97 458 252 1754 133 39 44 chr12 51833738 51834076 -91952379 + L1MB1 LINE L1 5821 6156 -12 186 114 182 0 chr12 51834587 51834631 -91951824 + MIR SINE MIR 133 184 -78 280 337 0 96 chr12 51834950 51835053 -91951402 - L2 LINE L2 0 3272 3189 2243 96 10 0 chr12 51835053 51835345 -91951110 + AluSq SINE Alu 1 295 -18 280 337 0 96 chr12 51835345 51835407 -91951048 - L2 LINE L2 -83 3189 3123 352 293 120 44 chr12 51836135 51836338 -91950117 - L2 LINE L2 -199 3073 2778 218 232 14 58 chr12 51836380 51836449 -91950006 + L2 LINE L2 3233 3298 -15 2281 75 3 14 chr12 51836483 51836776 -91949679 + AluY SINE Alu 1 290 -21 243 61 0 0 chr12 51837005 51837038 -91949417 + (TG)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr12 51837384 51837431 -91949024 + (TG)n Simple_repeat Simple_repeat 2 48 0 432 102 0 0 chr12 51837705 51837764 -91948691 + AluJ/FLAM SINE Alu 11 69 -243 383 236 61 54 chr12 51839189 51839337 -91947118 + L1ME4a LINE L1 5573 5721 -400 305 280 83 42 chr12 51839338 51839438 -91947017 + L1ME4a LINE L1 5762 5856 -265 1895 167 0 7 chr12 51839438 51839738 -91946717 - AluJo SINE Alu -14 298 1 305 280 83 42 chr12 51839738 51839830 -91946625 + L1ME4a LINE L1 5856 5962 -159 2207 88 4 0 chr12 51840093 51840393 -91946062 - AluSg SINE Alu 0 307 7 2055 146 0 0 chr12 51840413 51840700 -91945755 - AluSx SINE Alu -25 287 1 1037 207 16 0 chr12 51841056 51841244 -91945211 - AluJb SINE Alu -37 275 85 1991 104 34 0 chr12 51841811 51842079 -91944376 + AluSx SINE Alu 1 277 -35 183 42 0 0 chr12 51842091 51842115 -91944340 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 234 238 9 57 chr12 51842388 51842493 -91943962 - L1P LINE L1 -738 5416 5317 1737 182 13 3 chr12 51842535 51842842 -91943613 + AluJb SINE Alu 1 310 -2 1720 192 34 63 chr12 51842937 51843014 -91943441 + L1MB1 LINE L1 3039 3117 -3029 2304 107 0 0 chr12 51843014 51843313 -91943142 + AluSx SINE Alu 2 300 -12 1720 192 34 63 chr12 51843313 51843545 -91942910 + L1MB1 LINE L1 3117 3354 -2792 1537 166 36 19 chr12 51843545 51843852 -91942603 + AluJb SINE Alu 1 312 0 1720 192 34 63 chr12 51843852 51844124 -91942331 + L1MB1 LINE L1 3354 3604 -2542 724 112 9 26 chr12 51844125 51844241 -91942214 + FRAM SINE Alu 46 159 -17 4198 191 30 29 chr12 51844241 51844640 -91941815 + L1MB1 LINE L1 4322 4719 -1449 2109 116 3 30 chr12 51844640 51844801 -91941654 - AluSx SINE Alu -19 293 129 330 26 0 0 chr12 51844801 51844840 -91941615 + (TG)n Simple_repeat Simple_repeat 2 40 0 199 0 65 0 chr12 51844842 51844873 -91941582 + (TA)n Simple_repeat Simple_repeat 1 33 0 1938 128 14 4 chr12 51844873 51845154 -91941301 - AluSg SINE Alu -26 284 1 2109 116 3 30 chr12 51845154 51845289 -91941166 - AluSx SINE Alu -182 130 1 4198 191 30 29 chr12 51845289 51845317 -91941138 + L1MB1 LINE L1 4719 4745 -1423 696 168 0 46 chr12 51845317 51845448 -91941007 + FLAM_C SINE Alu 1 125 -8 4198 191 30 29 chr12 51845448 51846874 -91939581 + L1MB1 LINE L1 4745 6168 0 2331 89 0 3 chr12 51846965 51847258 -91939197 - AluSq SINE Alu -19 294 3 2002 146 0 7 chr12 51847321 51847615 -91938840 - AluSx SINE Alu -20 292 1 631 311 93 16 chr12 51847618 51848436 -91938019 - L1M4 LINE L1 -1156 4990 4110 2386 69 0 0 chr12 51848524 51848815 -91937640 + AluY SINE Alu 1 291 -20 2331 89 0 3 chr12 51848878 51849171 -91937284 + AluSq SINE Alu 3 294 -19 4198 191 30 29 chr12 51849262 51850688 -91935767 - L1MB1 LINE L1 0 6168 4744 709 160 0 46 chr12 51850688 51850819 -91935636 - FLAM_C SINE Alu -8 125 1 4198 191 30 29 chr12 51850819 51850847 -91935608 - L1MB1 LINE L1 -1424 4744 4718 2109 116 3 30 chr12 51850847 51850982 -91935473 + AluSx SINE Alu 1 138 -174 1938 128 14 4 chr12 51850982 51851263 -91935192 + AluSg SINE Alu 1 284 -26 199 0 65 0 chr12 51851263 51851294 -91935161 + (TA)n Simple_repeat Simple_repeat 2 34 0 330 26 0 0 chr12 51851296 51851335 -91935120 + (CA)n Simple_repeat Simple_repeat 2 40 0 2109 116 3 30 chr12 51851335 51851496 -91934959 + AluSx SINE Alu 138 293 -19 4198 191 30 29 chr12 51851496 51851895 -91934560 - L1MB1 LINE L1 -1450 4718 4322 724 112 9 26 chr12 51851895 51852011 -91934444 - FRAM SINE Alu -17 159 46 1714 192 34 65 chr12 51852012 51852285 -91934170 - L1MB1 LINE L1 -2542 3604 3324 1547 163 39 20 chr12 51852285 51852591 -91933864 - AluJb SINE Alu 0 312 1 1714 192 34 65 chr12 51852591 51852823 -91933632 - L1MB1 LINE L1 -2822 3324 3117 2304 107 0 0 chr12 51852823 51853122 -91933333 - AluSx SINE Alu -12 300 2 1714 192 34 65 chr12 51853122 51853199 -91933256 - L1MB1 LINE L1 -3029 3117 3039 1737 182 13 3 chr12 51853294 51853601 -91932854 - AluJb SINE Alu -2 310 1 4306 232 81 104 chr12 51853602 51854647 -91931808 + L1MC4a LINE L1 5264 6331 -1477 1873 143 27 10 chr12 51854647 51854940 -91931515 + AluJb SINE Alu 1 298 -14 4306 232 81 104 chr12 51854940 51855515 -91930940 + L1MC4a LINE L1 6331 6917 -891 2174 134 3 0 chr12 51855515 51855820 -91930635 - AluSx SINE Alu -6 306 1 4306 232 81 104 chr12 51855820 51855922 -91930533 + L1MC4a LINE L1 6917 7020 -788 711 90 10 0 chr12 51855922 51856022 -91930433 + U6 snRNA snRNA 1 101 -6 4306 232 81 104 chr12 51856022 51856053 -91930402 + L1MC4a LINE L1 7020 7050 -758 796 118 7 44 chr12 51856053 51856188 -91930267 + FLAM_C SINE Alu 4 133 0 4306 232 81 104 chr12 51856188 51856455 -91930000 + L1MC4a LINE L1 7050 7321 -487 761 161 7 36 chr12 51856455 51856592 -91929863 + FLAM_C SINE Alu 1 133 0 4306 232 81 104 chr12 51856592 51856938 -91929517 + L1MC4a LINE L1 7321 7688 -120 648 128 24 40 chr12 51856938 51857063 -91929392 + FLAM_C SINE Alu 21 143 0 2293 116 0 0 chr12 51857085 51857386 -91929069 - AluSx SINE Alu -11 301 1 251 182 26 26 chr12 51857390 51857467 -91928988 + L1MC4 LINE L1 7770 7846 -196 508 233 97 29 chr12 51857479 51857685 -91928770 + L1ME4a LINE L1 5607 5826 -295 2244 97 0 0 chr12 51857756 51858044 -91928411 + AluSg SINE Alu 1 288 -22 324 181 14 14 chr12 51858505 51858577 -91927878 - L2 LINE L2 -938 2376 2305 191 273 65 26 chr12 51858869 51858946 -91927509 + MIR SINE MIR 63 142 -66 2102 119 3 0 chr12 51861778 51862073 -91924382 + AluSg SINE Alu 1 296 -14 1161 38 8 0 chr12 51862095 51862227 -91924228 + AluY SINE Alu 2 134 -177 2183 61 11 0 chr12 51862227 51862532 -91923923 + AluY SINE Alu 1 308 0 1760 181 10 16 chr12 51862540 51862854 -91923601 + AluJo SINE Alu 1 312 0 1722 157 63 20 chr12 51863792 51864091 -91922364 - AluJo SINE Alu 0 312 1 287 299 87 31 chr12 51864228 51864355 -91922100 - MIR SINE MIR -71 191 58 728 150 0 17 chr12 51864419 51864539 -91921916 + AluJ SINE Alu 9 126 -186 901 220 52 0 chr12 51864570 51864743 -91921712 + AluJ SINE Alu 118 299 -13 374 255 149 21 chr12 51865193 51865334 -91921121 - MIR SINE MIR -12 250 92 226 280 0 0 chr12 51865573 51865623 -91920832 + L1MEd LINE L1 278 327 -5792 1602 57 0 5 chr12 51865690 51865884 -91920571 + AluY SINE Alu 1 193 -118 1225 172 64 5 chr12 51865916 51866120 -91920335 - AluJo SINE Alu -96 216 1 234 350 62 45 chr12 51866861 51867170 -91919285 + L2 LINE L2 2748 3058 -214 230 371 14 0 chr12 51867183 51867253 -91919202 + L2 LINE L2 3160 3230 -42 332 257 40 30 chr12 51867298 51867399 -91919056 - MIR SINE MIR -159 103 2 186 310 74 98 chr12 51868043 51868246 -91918209 + L2 LINE L2 3038 3235 -37 2123 129 0 7 chr12 51868373 51868675 -91917780 - AluSx SINE Alu -12 300 1 197 272 130 54 chr12 51869265 51869357 -91917098 + L2 LINE L2 3138 3236 -36 2281 110 0 3 chr12 51869359 51869667 -91916788 - AluSx SINE Alu -5 307 1 805 251 107 28 chr12 51871638 51872132 -91914323 - L1ME4a LINE L1 -47 6074 5542 1835 166 3 0 chr12 51872455 51872750 -91913705 + AluJo SINE Alu 1 296 -16 571 60 0 8 chr12 51873833 51874050 -91912405 + AluY SINE Alu 1 291 -20 288 245 157 10 chr12 51874426 51874528 -91911927 - L2 LINE L2 -4 3309 3193 306 261 8 52 chr12 51876033 51876167 -91910288 + L2 LINE L2 2936 3063 -209 2182 77 18 0 chr12 51876290 51876563 -91909892 + AluSg SINE Alu 1 278 -32 205 298 106 72 chr12 51876781 51877073 -91909382 - L2 LINE L2 -51 3221 2920 385 247 105 43 chr12 51877110 51877272 -91909183 - MIR SINE MIR -86 176 5 2105 134 7 13 chr12 51878926 51879233 -91907222 + AluSx SINE Alu 1 305 -7 1822 135 40 33 chr12 51880099 51880403 -91906052 + AluJo SINE Alu 1 306 -6 2559 55 0 13 chr12 51881294 51881604 -91904851 + AluY SINE Alu 1 306 -5 21 0 0 0 chr12 51882345 51882366 -91904089 + AT_rich Low_complexity Low_complexity 1 21 0 2245 71 0 7 chr12 51882450 51882770 -91903685 + AluY SINE Alu 1 318 0 1752 179 0 17 chr12 51882782 51883083 -91903372 + AluJo SINE Alu 3 298 -14 2192 121 14 0 chr12 51883460 51883757 -91902698 + AluSx SINE Alu 1 301 -11 2182 132 0 3 chr12 51883759 51884062 -91902393 + AluSx SINE Alu 1 302 -10 1091 184 35 10 chr12 51884984 51885185 -91901270 - MIR SINE MIR -48 214 9 671 323 23 5 chr12 51886137 51886357 -91900098 - MIR SINE MIR -37 225 2 2621 66 14 3 chr12 51886512 51886862 -91899593 + L1PA8 LINE L1 5819 6172 0 1641 148 12 4 chr12 51886886 51887130 -91899325 + AluSx SINE Alu 5 250 -62 310 194 15 60 chr12 51887135 51887202 -91899253 + AluJ/FLAM SINE Alu 1 64 -238 1779 193 3 3 chr12 51887320 51887616 -91898839 + AluJo SINE Alu 1 296 -16 353 277 164 13 chr12 51887636 51887795 -91898660 + L2 LINE L2 1913 2095 -1219 483 313 176 29 chr12 51887959 51888066 -91898389 - L2 LINE L2 -545 2769 2679 1801 125 96 4 chr12 51888066 51888338 -91898117 + AluJb SINE Alu 1 297 -15 483 313 176 29 chr12 51888338 51888706 -91897749 - L2 LINE L2 -635 2679 2224 614 129 10 0 chr12 51888926 51889027 -91897428 + HY1 scRNA scRNA 1 102 -10 2482 67 0 0 chr12 51889038 51889336 -91897119 - AluY SINE Alu -13 298 1 839 174 0 0 chr12 51889356 51889488 -91896967 + FLAM_A SINE Alu 2 133 0 329 284 126 61 chr12 51889687 51889948 -91896507 - L3 LINE CR1 -565 1012 735 2154 114 0 3 chr12 51890732 51891022 -91895433 + AluSx SINE Alu 1 289 -23 21 36 0 0 chr12 51891060 51891088 -91895367 + AT_rich Low_complexity Low_complexity 1 28 0 2113 127 3 3 chr12 51891506 51891806 -91894649 + AluSx SINE Alu 1 300 -12 222 351 15 46 chr12 51892201 51892332 -91894123 - L2 LINE L2 -159 3113 2987 203 333 0 0 chr12 51892448 51892502 -91893953 - L3 LINE CR1 -20 1557 1504 2010 135 3 0 chr12 51893164 51893446 -91893009 + AluSx SINE Alu 1 283 -29 519 31 0 0 chr12 51893447 51893512 -91892943 + (CATA)n Simple_repeat Simple_repeat 2 66 0 601 141 0 11 chr12 51893514 51893606 -91892849 + FLAM_A SINE Alu 26 116 -26 473 224 100 72 chr12 51893711 51894017 -91892438 + L1MC4a LINE L1 5701 6016 -105 1994 179 17 14 chr12 51894982 51895401 -91891054 - L1MB8 LINE L1 -11 6167 5748 1737 173 44 3 chr12 51896484 51896779 -91889676 - AluJo SINE Alu -5 307 1 393 138 0 0 chr12 51896779 51896844 -91889611 + Tigger3(Golem) DNA MER2_type 224 288 -2741 1593 171 44 27 chr12 51896846 51897139 -91889316 - AluJo SINE Alu -14 298 1 1083 228 30 13 chr12 51898233 51898470 -91887985 + MIR SINE MIR 1 241 -21 1813 138 0 70 chr12 51898507 51898814 -91887641 + AluJo SINE Alu 1 285 -27 225 0 0 0 chr12 51898814 51898839 -91887616 + (CA)n Simple_repeat Simple_repeat 2 26 0 1813 138 0 70 chr12 51898839 51898858 -91887597 + AluJo SINE Alu 285 304 -8 473 220 76 8 chr12 51899017 51899135 -91887320 - L2 LINE L2 -2 3311 3186 672 241 15 0 chr12 51899829 51899966 -91886489 - FRAM SINE Alu -45 131 1 2214 106 3 6 chr12 51900321 51900633 -91885822 - AluSx SINE Alu -1 311 1 315 247 247 18 chr12 51900728 51900894 -91885561 + MIR SINE MIR 59 262 0 23 33 0 0 chr12 51900894 51900924 -91885531 + AT_rich Low_complexity Low_complexity 1 30 0 548 163 0 0 chr12 51900931 51901017 -91885438 + AluSq SINE Alu 1 86 -226 2320 69 10 0 chr12 51901017 51901305 -91885150 + AluY SINE Alu 1 291 -20 1617 96 14 9 chr12 51901305 51901523 -91884932 + AluSq SINE Alu 73 293 -20 948 191 6 0 chr12 51901527 51901700 -91884755 + FAM SINE Alu 2 175 0 265 235 76 8 chr12 51901736 51901855 -91884600 + L1P5 LINE L1 5317 5443 -708 21 0 0 0 chr12 51901872 51901893 -91884562 + AT_rich Low_complexity Low_complexity 1 21 0 1720 180 14 17 chr12 51901895 51902190 -91884265 + AluJo SINE Alu 3 296 -16 326 359 77 17 chr12 51902205 51902386 -91884069 + L1MC/D LINE L1 5426 5617 -2191 374 325 59 35 chr12 51902488 51902691 -91883764 - MIR SINE MIR -2 260 53 238 172 35 0 chr12 51902844 51902902 -91883553 + (TA)n Simple_repeat Simple_repeat 2 61 0 2151 109 58 0 chr12 51903632 51903925 -91882530 + AluSx SINE Alu 1 310 -2 683 245 187 21 chr12 51904365 51904606 -91881849 - MLT1J LTR MaLR -209 302 22 293 134 52 134 chr12 51905277 51905374 -91881081 - HsTC2 DNA Tc2 -1809 89 1 241 282 73 9 chr12 51906299 51906409 -91880046 + L2 LINE L2 3196 3312 -1 808 245 92 18 chr12 51906468 51906750 -91879705 - L2 LINE L2 0 3313 3011 * 1207 248 128 6 chr12 51906746 51907242 -91879213 + L2 LINE L2 2757 3313 0 597 252 92 0 chr12 51908050 51908258 -91878197 + MIR SINE MIR 32 262 0 2557 46 0 20 chr12 51908301 51908603 -91877852 + AluY SINE Alu 1 296 -15 851 200 7 0 chr12 51908603 51908780 -91877675 + AluJo/FRAM SINE Alu 134 311 0 949 166 55 0 chr12 51908782 51908945 -91877510 + FAM SINE Alu 1 172 -3 372 224 168 43 chr12 51908972 51909204 -91877251 + L2 LINE L2 3053 3313 0 180 255 0 122 chr12 51909321 51909370 -91877085 + L3 LINE CR1 1489 1522 -55 2278 112 0 3 chr12 51909370 51909675 -91876780 - AluSq SINE Alu -9 304 1 180 255 0 122 chr12 51909675 51909723 -91876732 + L3 LINE CR1 1522 1574 -3 207 0 0 0 chr12 51910498 51910521 -91875934 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2217 101 7 0 chr12 51910523 51910809 -91875646 - AluSq SINE Alu -25 288 1 1232 186 54 50 chr12 51910836 51911115 -91875340 + AluJo SINE Alu 1 280 -32 2270 125 0 0 chr12 51911271 51911575 -91874880 + AluSx SINE Alu 1 304 -8 2294 98 0 3 chr12 51911576 51911873 -91874582 + AluSg SINE Alu 1 296 -14 26 0 0 0 chr12 51912051 51912077 -91874378 + AT_rich Low_complexity Low_complexity 1 26 0 725 210 0 0 chr12 51912077 51912196 -91874259 - FLAM_C SINE Alu -23 120 2 1298 178 33 108 chr12 51912741 51913073 -91873382 + AluJo SINE Alu 1 307 -5 1480 153 35 16 chr12 51913642 51913897 -91872558 + AluJb SINE Alu 36 295 -17 404 262 76 35 chr12 51913981 51914153 -91872302 - MLT1J LTR MaLR 0 511 333 316 241 67 137 chr12 51914182 51914481 -91871974 - MLT1I LTR MaLR -24 385 108 546 215 67 11 chr12 51914592 51914837 -91871618 - MLT1J LTR MaLR -218 293 1 22 0 0 0 chr12 51915277 51915299 -91871156 + AT_rich Low_complexity Low_complexity 1 22 0 292 0 0 0 chr12 51915342 51915378 -91871077 + AluY SINE Alu 173 208 -93 849 69 0 0 chr12 51915378 51915508 -91870947 + AluY SINE Alu 183 312 0 300 194 15 0 chr12 51915508 51915575 -91870880 - L1MC4 LINE L1 -34 8008 7941 239 267 44 33 chr12 51915816 51915906 -91870549 - L1MC4 LINE L1 -2 8040 7950 1814 140 66 0 chr12 51915908 51916194 -91870261 - AluSx SINE Alu -7 305 1 1695 162 16 32 chr12 51916217 51916309 -91870146 - AluJb SINE Alu -3 309 217 2497 75 0 7 chr12 51916309 51916616 -91869839 - AluY SINE Alu -6 305 1 1695 162 16 32 chr12 51916616 51916837 -91869618 - AluJb SINE Alu -95 217 1 2441 80 0 0 chr12 51916846 51917147 -91869308 - AluSc SINE Alu -8 301 1 237 292 128 62 chr12 51917315 51917572 -91868883 + L2 LINE L2 3026 3299 -14 2297 94 3 0 chr12 51918509 51918796 -91867659 + AluSx SINE Alu 1 288 -24 440 192 0 0 chr12 51918799 51918872 -91867583 + AluSg/x SINE Alu 125 197 -115 396 0 0 0 chr12 51918902 51918946 -91867509 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 564 55 14 0 chr12 51919058 51919131 -91867324 + AluY SINE Alu 61 134 -177 2072 131 7 0 chr12 51919131 51919437 -91867018 + AluSg SINE Alu 1 308 -2 450 256 38 30 chr12 51919607 51919740 -91866715 - MIR SINE MIR -108 154 21 364 219 22 80 chr12 51921459 51921596 -91864859 - L2 LINE L2 -213 3059 2931 1854 135 19 38 chr12 51921646 51922015 -91864440 + AluJo SINE Alu 1 363 0 214 209 60 45 chr12 51922208 51922275 -91864180 - L2 LINE L2 -665 2649 2582 1996 154 23 0 chr12 51922310 51922615 -91863840 + AluJb SINE Alu 1 312 0 272 93 67 80 chr12 51922616 51922691 -91863764 + Looper DNA T2_type 790 863 -695 277 250 56 19 chr12 51922850 51922958 -91863497 - MER5B DNA MER1_type -46 132 21 1762 88 130 0 chr12 51923972 51924233 -91862222 - AluSp SINE Alu -7 296 2 532 240 138 25 chr12 51924858 51925097 -91861358 + MIR SINE MIR 1 261 -1 1714 173 13 30 chr12 51925201 51925502 -91860953 - AluJb SINE Alu -16 296 1 801 172 0 15 chr12 51925534 51925668 -91860787 + FLAM_A SINE Alu 2 133 0 2151 119 0 3 chr12 51925682 51925975 -91860480 + AluSx SINE Alu 1 292 -20 527 221 261 5 chr12 51926492 51926691 -91859764 + MIR SINE MIR 12 261 -1 270 316 0 13 chr12 51927025 51927101 -91859354 - MIR SINE MIR -114 94 20 964 166 50 17 chr12 51928573 51928754 -91857701 - AluJb SINE Alu -13 299 113 194 302 116 63 chr12 51929415 51929604 -91856851 + L3 LINE CR1 1179 1377 -200 1767 101 0 0 chr12 51929779 51930006 -91856449 + AluSx SINE Alu 1 227 -85 432 0 0 0 chr12 51930031 51930079 -91856376 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 285 205 181 12 chr12 51930659 51930742 -91855713 - L2 LINE L2 -1 3271 3175 1214 166 170 31 chr12 51931224 51931483 -91854972 + AluJo SINE Alu 1 295 -7 830 182 11 50 chr12 51931526 51931707 -91854748 - FRAM SINE Alu -10 166 1 1367 106 16 0 chr12 51932105 51932294 -91854161 + AluSq SINE Alu 1 192 -121 1925 132 32 0 chr12 51932446 51932727 -91853728 - AluSx SINE Alu -22 290 1 838 129 0 50 chr12 51932801 51932941 -91853514 + FLAM_C SINE Alu 1 133 0 1832 146 0 57 chr12 51933198 51933406 -91853049 + AluSx SINE Alu 1 187 -125 2340 89 0 0 chr12 51933406 51933697 -91852758 + AluSc SINE Alu 1 291 -18 1832 146 0 57 chr12 51933697 51933803 -91852652 + AluSx SINE Alu 187 297 -15 2525 80 3 0 chr12 51933960 51934272 -91852183 + AluSp SINE Alu 1 313 0 388 252 24 0 chr12 51934415 51934538 -91851917 + L1M4 LINE L1 2404 2529 -3617 2454 63 7 10 chr12 51934683 51934983 -91851472 + AluSc SINE Alu 1 299 -10 520 317 51 39 chr12 51935209 51935427 -91851028 - L2 LINE L2 -922 2392 2178 970 179 5 36 chr12 51935427 51935622 -91850833 + MER5A DNA MER1_type 1 189 0 520 317 51 39 chr12 51935622 51935754 -91850701 - L2 LINE L2 -1136 2178 2049 1882 159 3 10 chr12 51935754 51936063 -91850392 + AluJb SINE Alu 5 311 -1 520 317 51 39 chr12 51936063 51936178 -91850277 - L2 LINE L2 -1265 2049 1920 537 201 53 111 chr12 51936434 51936528 -91849927 - MER97a DNA MER1_type? -716 178 98 2110 117 3 0 chr12 51936528 51936842 -91849613 - AluSx SINE Alu 0 315 1 537 201 53 111 chr12 51936842 51936935 -91849520 - MER97a DNA MER1_type? -796 98 1 329 303 69 21 chr12 51936962 51937150 -91849305 - L2 LINE L2 -1738 1576 1380 1878 167 17 0 chr12 51937303 51937591 -91848864 + AluJb SINE Alu 1 293 -19 183 167 0 0 chr12 51938700 51938730 -91847725 + L2 LINE L2 3222 3251 -21 2198 133 0 3 chr12 51940300 51940602 -91845853 + AluSg SINE Alu 1 301 -9 196 300 44 44 chr12 51940659 51940749 -91845706 - L2 LINE L2 -972 2342 2253 1018 172 101 0 chr12 51940968 51941166 -91845289 + MER20 DNA MER1_type 1 218 -1 227 228 64 111 chr12 51941212 51941383 -91845072 + L1ME4a LINE L1 5863 6025 -96 321 26 0 0 chr12 51941383 51941421 -91845034 + (TG)n Simple_repeat Simple_repeat 2 39 0 300 27 0 0 chr12 51941457 51941494 -91844961 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 414 0 0 0 chr12 51941493 51941539 -91844916 + (TG)n Simple_repeat Simple_repeat 2 47 0 1736 141 50 14 chr12 51941550 51941827 -91844628 - AluJo SINE Alu -25 287 1 2242 101 0 10 chr12 51942019 51942315 -91844140 + AluSq SINE Alu 1 293 -20 383 154 64 36 chr12 51942384 51942494 -91843961 + L1ME4a LINE L1 5987 6099 -22 21 36 0 0 chr12 51942602 51942630 -91843825 + AT_rich Low_complexity Low_complexity 1 28 0 386 268 109 42 chr12 51943189 51943428 -91843027 + L2 LINE L2 3018 3272 0 324 354 11 28 chr12 51943830 51944011 -91842444 - MER5A DNA MER1_type 0 189 1 1748 143 52 21 chr12 51944868 51945155 -91841300 - AluJo SINE Alu -15 297 2 223 210 81 48 chr12 51945158 51945220 -91841235 + MIR SINE MIR 117 180 -82 186 288 0 41 chr12 51945396 51945469 -91840986 - L2 LINE L2 -182 3090 3021 755 231 127 18 chr12 51946121 51946350 -91840105 - MIR SINE MIR -6 256 3 2129 133 0 0 chr12 51947110 51947404 -91839051 - AluSx SINE Alu -18 294 1 207 100 0 0 chr12 51947442 51947472 -91838983 + (T)n Simple_repeat Simple_repeat 1 30 0 1569 146 23 91 chr12 51947607 51947916 -91838539 + AluJo SINE Alu 2 289 -23 1146 176 38 5 chr12 51948943 51949153 -91837302 + MER20 DNA MER1_type 1 217 -2 2218 104 16 3 chr12 51949656 51949964 -91836491 - AluSx SINE Alu 0 312 1 42 65 0 0 chr12 51951715 51951792 -91834663 + AT_rich Low_complexity Low_complexity 1 77 0 1790 131 78 7 chr12 51951805 51952088 -91834367 - AluSx SINE Alu -9 303 1 336 260 118 3 chr12 51952124 51952256 -91834199 + MIR SINE MIR 9 158 -68 2096 89 56 0 chr12 51952260 51952529 -91833926 + AluSc SINE Alu 1 284 -25 634 126 7 126 chr12 51952553 51952690 -91833765 + AluJo SINE Alu 3 122 -190 2098 107 17 3 chr12 51952690 51952980 -91833475 - AluSx SINE Alu -18 294 1 272 164 0 0 chr12 51952945 51952997 -91833458 - AluSg/x SINE Alu -132 170 130 238 238 0 143 chr12 51953002 51953107 -91833348 + MIR SINE MIR 147 236 -26 329 242 180 8 chr12 51953269 51953397 -91833058 + MIR SINE MIR 2 151 -111 574 242 99 0 chr12 51954542 51954724 -91831731 + MIR SINE MIR 47 246 -16 360 328 31 73 chr12 51955048 51955335 -91831120 + L2 LINE L2 2965 3239 -33 * 495 274 127 25 chr12 51955331 51955568 -91830887 - MIR SINE MIR 0 262 2 259 370 0 0 chr12 51956184 51956276 -91830179 - L3 LINE CR1 -21 1556 1465 1981 137 16 7 chr12 51956316 51956622 -91829833 + AluJb SINE Alu 1 309 -3 185 327 184 6 chr12 51956624 51956792 -91829663 - L3 LINE CR1 -226 1351 1154 2338 99 3 0 chr12 51956814 51957108 -91829347 + AluSq SINE Alu 1 295 -18 2265 80 31 0 chr12 51957291 51957577 -91828878 - AluSg SINE Alu -11 299 5 696 132 0 35 chr12 51957768 51957882 -91828573 + HY1 scRNA scRNA 1 110 -2 2268 103 0 0 chr12 51958211 51958502 -91827953 - AluSx SINE Alu -21 291 1 23 33 0 0 chr12 51958582 51958612 -91827843 + AT_rich Low_complexity Low_complexity 1 30 0 1426 144 58 26 chr12 51961131 51961443 -91825012 - MER33 DNA MER1_type -2 322 1 2151 114 10 10 chr12 51963118 51963417 -91823038 - AluSx SINE Alu -13 299 1 1481 178 10 109 chr12 51963894 51964299 -91822156 + MLT1A1 LTR MaLR 1 365 0 362 332 25 25 chr12 51964315 51964511 -91821944 - L2 LINE L2 -455 2859 2664 975 166 12 6 chr12 51964513 51964682 -91821773 + FRAM SINE Alu 1 170 -6 473 311 209 39 chr12 51964689 51964762 -91821693 - L2 LINE L2 -641 2673 2614 1069 193 70 94 chr12 51964762 51965136 -91821319 + MLT1A1 LTR MaLR 1 365 0 473 311 209 39 chr12 51965136 51965220 -91821235 - L2 LINE L2 -700 2614 2546 2404 97 0 10 chr12 51965220 51965529 -91820926 + AluSx SINE Alu 1 306 -6 473 311 209 39 chr12 51965529 51965896 -91820559 - L2 LINE L2 -768 2546 2243 2206 100 3 0 chr12 51965896 51966187 -91820268 + AluSx SINE Alu 1 292 -20 473 311 209 39 chr12 51966187 51966630 -91819825 - L2 LINE L2 -1071 2243 1539 335 256 109 24 chr12 51966860 51967071 -91819384 + L1M4 LINE L1 2981 3209 -2937 1516 185 38 11 chr12 51967456 51967743 -91818712 + AluJo SINE Alu 1 295 -17 380 107 36 0 chr12 51967749 51967805 -91818650 - MLT1G LTR MaLR 0 590 533 331 319 43 50 chr12 51967807 51967945 -91818510 - L1M4 LINE L1 -2030 4116 3979 2204 118 0 10 chr12 51967945 51968251 -91818204 + AluSq SINE Alu 1 303 -10 2543 50 0 13 chr12 51968251 51968554 -91817901 + AluY SINE Alu 1 299 -12 2166 102 7 3 chr12 51968563 51968858 -91817597 + AluSx SINE Alu 1 296 -16 331 319 43 50 chr12 51968858 51968987 -91817468 - L1M4 LINE L1 -2174 3972 3840 313 267 112 9 chr12 51969116 51969232 -91817223 + MLT1G LTR MaLR 8 135 -460 * 488 285 65 18 chr12 51969222 51969441 -91817014 + MLT1G LTR MaLR 100 358 -219 860 86 60 0 chr12 51969478 51969594 -91816861 - AluSq SINE Alu -130 183 61 1357 215 64 45 chr12 51969595 51970110 -91816345 + L1MDa LINE L1 1394 2238 -4303 1011 105 0 0 chr12 51970110 51970243 -91816212 + FLAM_C SINE Alu 1 133 0 1342 234 66 13 chr12 51970272 51970500 -91815955 + L1M4 LINE L1 3998 4257 -1889 1314 111 103 0 chr12 51970500 51970734 -91815721 + L1MA1 LINE L1 6041 6298 -4 1342 234 66 13 chr12 51970734 51970898 -91815557 + L1M4 LINE L1 4257 4411 -1735 1006 125 13 7 chr12 51970898 51971050 -91815405 + MER47A DNA MER2_type 4 156 -210 362 113 0 16 chr12 51971151 51971213 -91815242 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 2360 71 4 0 chr12 51971215 51971495 -91814960 - AluSp SINE Alu -32 281 1 1146 176 38 5 chr12 51972157 51972367 -91814088 - MER20 DNA MER1_type -2 217 1 1505 142 26 94 chr12 51973394 51973703 -91812752 - AluJo SINE Alu -23 289 2 228 67 0 0 chr12 51973838 51973868 -91812587 + (A)n Simple_repeat Simple_repeat 1 30 0 2264 126 0 0 chr12 51973904 51974214 -91812241 + AluSx SINE Alu 1 310 -2 450 256 38 30 chr12 51974384 51974517 -91811938 - MIR SINE MIR -108 154 21 364 219 22 80 chr12 51976236 51976373 -91810082 - L2 LINE L2 -213 3059 2931 1854 135 19 38 chr12 51976423 51976792 -91809663 + AluJo SINE Alu 1 363 0 214 209 60 45 chr12 51976985 51977052 -91809403 - L2 LINE L2 -665 2649 2582 1996 154 23 0 chr12 51977087 51977392 -91809063 + AluJb SINE Alu 1 312 0 272 93 67 80 chr12 51977393 51977468 -91808987 + Looper DNA T2_type 790 863 -695 277 250 56 19 chr12 51977627 51977735 -91808720 - MER5B DNA MER1_type -46 132 21 1762 88 130 0 chr12 51978749 51979010 -91807445 - AluSp SINE Alu -7 296 2 532 240 138 25 chr12 51979635 51979874 -91806581 + MIR SINE MIR 1 261 -1 1714 173 13 30 chr12 51979978 51980279 -91806176 - AluJb SINE Alu -16 296 1 801 172 0 15 chr12 51980311 51980445 -91806010 + FLAM_A SINE Alu 2 133 0 2151 119 0 3 chr12 51980459 51980752 -91805703 + AluSx SINE Alu 1 292 -20 527 221 261 5 chr12 51981269 51981468 -91804987 + MIR SINE MIR 12 261 -1 270 316 0 13 chr12 51981802 51981878 -91804577 - MIR SINE MIR -114 94 20 887 156 58 7 chr12 51983350 51983504 -91802951 - AluJb SINE Alu -13 299 138 2191 114 7 0 chr12 51983607 51983906 -91802549 - AluSx SINE Alu -11 301 1 2074 108 10 3 chr12 51984569 51984866 -91801589 - AluSp SINE Alu -10 303 5 2430 75 0 3 chr12 51985241 51985533 -91800922 - AluY SINE Alu -20 291 1 3937 217 86 64 chr12 51985910 51986038 -91800417 + L1MDb LINE L1 783 907 -5499 1830 165 4 0 chr12 51986038 51986311 -91800144 + AluJo SINE Alu 12 285 -27 3937 217 86 64 chr12 51986311 51987392 -91799063 + L1MDb LINE L1 907 1963 -4443 2198 145 18 6 chr12 51987392 51987724 -91798731 + MER1B DNA MER1_type 2 337 0 3937 217 86 64 chr12 51987724 51987742 -91798713 + L1MDb LINE L1 1963 1979 -4427 2188 90 21 4 chr12 51987742 51988021 -91798434 + AluSx SINE Alu 1 284 -28 3937 217 86 64 chr12 51988021 51988442 -91798013 + L1MDb LINE L1 1979 2443 -3963 2364 192 92 68 chr12 51988447 51989168 -91797287 + L1MB8 LINE L1 3692 4394 -1752 2171 114 3 0 chr12 51989168 51989458 -91796997 + AluSq SINE Alu 1 291 -22 2364 192 92 68 chr12 51989458 51989515 -91796940 + L1MB8 LINE L1 4394 4448 -1698 2224 122 0 3 chr12 51989515 51989819 -91796636 + AluSg SINE Alu 1 303 -7 2364 192 92 68 chr12 51989819 51989873 -91796582 + L1MB8 LINE L1 4448 4545 -1601 4213 152 39 41 chr12 51989876 51989903 -91796552 + L1MB8 LINE L1 5309 5335 -843 2229 96 3 26 chr12 51989903 51990205 -91796250 + AluSq SINE Alu 1 295 -18 4213 152 39 41 chr12 51990205 51991033 -91795422 + L1MB8 LINE L1 5335 6162 -16 870 240 126 30 chr12 51991048 51991327 -91795128 + L1MDb LINE L1 2436 2766 -3640 1343 164 141 0 chr12 51991327 51991583 -91794872 + AluJo SINE Alu 1 292 -10 870 240 126 30 chr12 51991583 51991699 -91794756 + L1MDb LINE L1 2766 2869 -3537 1923 132 7 10 chr12 51991735 51992023 -91794432 - AluSg SINE Alu -11 299 13 969 189 134 7 chr12 51992213 51992488 -91793967 + Charlie1 DNA MER1_type 2448 2757 -4 2287 108 0 0 chr12 51992807 51993104 -91793351 + AluSg1 SINE Alu 1 297 -12 1818 150 31 7 chr12 51993105 51993399 -91793056 + AluJb SINE Alu 1 301 -11 1237 280 124 27 chr12 51993440 51994090 -91792365 - L2 LINE L2 -61 3252 2666 244 0 56 0 chr12 51994090 51994126 -91792329 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1252 41 0 0 chr12 51994126 51994272 -91792183 - L1PA3 LINE L1 -10 6145 6000 1237 280 124 27 chr12 51994272 51994356 -91792099 - L2 LINE L2 -646 2667 2416 711 155 0 39 chr12 51994361 51994490 -91791965 + FLAM_A SINE Alu 2 125 -8 510 17 0 0 chr12 51994500 51994559 -91791896 + (CA)n Simple_repeat Simple_repeat 2 60 0 2596 193 36 71 chr12 51994684 51995290 -91791165 - MLT1E LTR MaLR 0 593 9 578 244 0 0 chr12 51995299 51995422 -91791033 - L2 LINE L2 -996 2318 2196 629 255 88 29 chr12 51995543 51995782 -91790673 + L1MCc LINE L1 216 468 -5955 2753 205 61 41 chr12 51995953 51996675 -91789780 + L1MCc LINE L1 832 1583 -5048 1726 165 0 30 chr12 51996675 51996972 -91789483 + AluJo SINE Alu 6 293 -19 2753 205 61 41 chr12 51996972 51997138 -91789317 + L1MCc LINE L1 1583 1744 -4887 468 265 225 8 chr12 51997142 51997395 -91789060 - L2 LINE L2 -1084 2230 1923 1817 171 0 10 chr12 51997407 51997705 -91788750 - AluJo SINE Alu -17 295 1 644 226 15 0 chr12 51997708 51997841 -91788614 - FRAM SINE Alu -16 160 26 851 262 45 5 chr12 51997844 51998046 -91788409 - MER82 DNA MER2_type -7 646 437 2289 84 0 32 chr12 51998473 51998781 -91787674 - AluSg SINE Alu -12 298 1 21 0 0 0 chr12 52000194 52000215 -91786240 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 17 50 chr12 52000320 52000439 -91786016 + L2 LINE L2 3001 3115 -157 2293 94 10 0 chr12 52000553 52000851 -91785604 - AluSx SINE Alu -11 301 1 1313 212 156 60 chr12 52000981 52001584 -91784871 + MER67D LTR ERV1 1 514 0 1626 159 48 24 chr12 52001632 52001927 -91784528 + AluJb SINE Alu 1 302 -10 1960 103 33 0 chr12 52002371 52002643 -91783812 - AluSx SINE Alu -31 281 1 1858 120 75 24 chr12 52002761 52003053 -91783402 + AluSx SINE Alu 1 307 -5 1329 168 47 33 chr12 52003054 52003328 -91783127 + MER82 DNA MER2_type 188 465 -188 1262 190 57 57 chr12 52003576 52003765 -91782690 - AluJo SINE Alu -1 311 120 2499 63 0 13 chr12 52003765 52004067 -91782388 - AluY SINE Alu -13 298 1 1262 190 57 57 chr12 52004067 52004177 -91782278 - AluJo SINE Alu -191 121 12 930 143 8 151 chr12 52004485 52004723 -91781732 + AluJo SINE Alu 85 288 -24 713 161 0 46 chr12 52004866 52004996 -91781459 + FLAM_A SINE Alu 13 136 -6 2425 68 10 0 chr12 52005054 52005362 -91781093 + AluY SINE Alu 1 311 0 2301 103 0 10 chr12 52005764 52006075 -91780380 + AluSp SINE Alu 1 308 -5 521 105 0 35 chr12 52006126 52006212 -91780243 + L1P4 LINE L1 5391 5473 -695 1736 172 0 23 chr12 52006612 52006914 -91779541 + AluJb SINE Alu 1 295 -17 3855 168 56 42 chr12 52007012 52007057 -91779398 - L1MB2 LINE L1 0 6171 6128 1607 165 75 0 chr12 52007057 52007336 -91779119 - AluJo SINE Alu -12 300 1 2374 87 3 0 chr12 52007345 52007643 -91778812 - AluSc SINE Alu -10 299 1 3855 168 56 42 chr12 52007643 52007717 -91778738 - L1MB2 LINE L1 -50 6121 6049 1655 141 53 14 chr12 52007717 52008001 -91778454 - AluSx SINE Alu -17 295 1 3855 168 56 42 chr12 52008001 52008678 -91777777 - L1MB2 LINE L1 -122 6049 5353 508 266 230 26 chr12 52008979 52009153 -91777302 - L3 LINE CR1 -42 1535 1398 1824 154 20 7 chr12 52009153 52009451 -91777004 - AluJb SINE Alu -2 310 9 508 266 230 26 chr12 52009451 52009615 -91776840 - L3 LINE CR1 -179 1398 1128 228 315 34 34 chr12 52009627 52009716 -91776739 + L3 LINE CR1 968 1056 -521 321 256 98 53 chr12 52009734 52009867 -91776588 - MER5A DNA MER1_type -1 188 50 2216 101 10 3 chr12 52010410 52010717 -91775738 - AluSq SINE Alu -4 309 1 2083 129 0 19 chr12 52011003 52011312 -91775143 - AluJb SINE Alu -9 303 1 329 235 51 41 chr12 52011313 52011411 -91775044 - L1MEd LINE L1 -3316 2813 2715 1946 92 4 0 chr12 52011533 52011784 -91774671 + AluSg SINE Alu 43 294 -16 2091 132 3 6 chr12 52011899 52012210 -91774245 + AluSx SINE Alu 1 310 -2 2233 109 7 0 chr12 52012422 52012725 -91773730 + AluSx SINE Alu 5 309 -3 314 238 10 59 chr12 52012990 52013091 -91773364 - L1MEd LINE L1 -5039 1080 985 1440 199 16 16 chr12 52013093 52013405 -91773050 - L1MB2 LINE L1 -884 5262 4951 2452 84 0 0 chr12 52013408 52013705 -91772750 - AluSx SINE Alu -15 297 1 1631 169 14 7 chr12 52013720 52013998 -91772457 - AluJo SINE Alu -20 292 13 1611 247 54 24 chr12 52014487 52015038 -91771417 + L1MD1 LINE L1 5673 6240 -2 372 325 35 39 chr12 52015135 52015390 -91771065 + L1MEd LINE L1 457 710 -5409 26 64 0 0 chr12 52015390 52015437 -91771018 + AT_rich Low_complexity Low_complexity 1 47 0 476 220 105 10 chr12 52015479 52015679 -91770776 + L1MEd LINE L1 660 878 -5241 2433 35 3 0 chr12 52015686 52015991 -91770464 - AluY SINE Alu 0 306 1 358 89 0 0 chr12 52016112 52016168 -91770287 - AluSp/q SINE Alu -2 301 246 267 167 42 56 chr12 52016171 52016243 -91770212 + L1M4 LINE L1 4487 4557 -1589 2096 98 39 3 chr12 52016249 52016535 -91769920 + AluSx SINE Alu 2 297 -15 210 71 0 0 chr12 52016535 52016563 -91769892 + (TA)n Simple_repeat Simple_repeat 2 29 0 1746 186 14 0 chr12 52017500 52017795 -91768660 - AluJo SINE Alu -13 299 1 1651 201 25 14 chr12 52018008 52018361 -91768094 - L1ME1 LINE L1 0 6166 5810 1671 203 47 11 chr12 52018384 52018749 -91767706 - L1ME1 LINE L1 -4 6162 5785 1060 155 105 0 chr12 52018750 52018931 -91767524 + MSTA LTR MaLR 1 200 -226 1739 183 0 3 chr12 52018931 52019220 -91767235 + AluJo SINE Alu 1 288 -24 14335 228 26 14 chr12 52019335 52021048 -91765407 + L1PA15 LINE L1 1266 2958 -3839 2012 141 14 0 chr12 52021048 52021339 -91765116 - AluSg SINE Alu -15 295 1 14335 228 26 14 chr12 52021339 52023794 -91762661 + L1PA15 LINE L1 2958 5488 -1309 6132 125 22 3 chr12 52023795 52024849 -91761606 + L1PA15 LINE L1 5731 6811 -5 1344 153 42 4 chr12 52024857 52025093 -91761362 + MSTA LTR MaLR 184 428 0 686 200 117 6 chr12 52025093 52025273 -91761182 - L1ME1 LINE L1 -2204 5791 5592 2000 148 0 19 chr12 52025306 52025624 -91760831 - AluJb SINE Alu 0 312 1 338 244 189 18 chr12 52025628 52025845 -91760610 - L1ME4a LINE L1 -25 6096 5843 553 259 25 6 chr12 52025867 52026029 -91760426 - L1ME4a LINE L1 -386 5735 5571 198 0 0 0 chr12 52026284 52026306 -91760149 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2347 72 0 44 chr12 52026403 52026776 -91759679 - AluY SINE Alu 0 311 1 667 203 147 15 chr12 52026832 52027029 -91759426 - L1MC5 LINE L1 -51 7910 7688 321 296 15 15 chr12 52027035 52027170 -91759285 - L1ME4a LINE L1 -1130 5016 4882 503 204 11 0 chr12 52027761 52027854 -91758601 + MER7A DNA MER2_type 1 92 -254 2330 98 0 0 chr12 52027854 52028149 -91758306 - AluSx SINE Alu -16 296 2 1048 121 0 0 chr12 52028152 52028292 -91758163 - AluSq/x SINE Alu -172 140 1 1353 165 86 4 chr12 52028292 52028535 -91757920 + MER7A DNA MER2_type 75 337 0 1542 133 12 127 chr12 52029057 52029254 -91757201 - AluJo SINE Alu -10 292 147 1822 168 0 10 chr12 52029254 52029545 -91756910 - AluJo SINE Alu -24 288 1 1542 133 12 127 chr12 52029545 52029677 -91756778 - AluJo SINE Alu -155 147 1 247 301 18 18 chr12 52029685 52029798 -91756657 - MIR SINE MIR -54 208 96 287 279 54 36 chr12 52030072 52030183 -91756272 + MIR SINE MIR 2 114 -148 348 344 94 5 chr12 52030248 52030440 -91756015 - MIR SINE MIR -48 214 6 2244 85 3 7 chr12 52030449 52030743 -91755712 - AluSc SINE Alu -16 293 1 261 217 72 0 chr12 52030770 52030839 -91755616 + MIR SINE MIR 121 194 -68 1956 157 0 3 chr12 52031164 52031458 -91754997 - AluSx SINE Alu -16 296 4 571 202 32 123 chr12 52031479 52031557 -91754898 + L1M4 LINE L1 2241 2325 -3821 1507 169 85 0 chr12 52031557 52031817 -91754638 + AluJo SINE Alu 13 294 -18 571 202 32 123 chr12 52031817 52031990 -91754465 + L1M4 LINE L1 2325 2469 -3677 1039 184 33 41 chr12 52031996 52032240 -91754215 + L1MD2 LINE L1 5586 5827 -532 666 215 8 0 chr12 52032417 52032538 -91753917 - AluSq/x SINE Alu -189 123 2 735 250 49 59 chr12 52032581 52032928 -91753527 - L1MEc LINE L1 -3770 2450 2134 861 188 0 0 chr12 52033512 52033645 -91752810 + FLAM_C SINE Alu 1 133 0 355 254 97 35 chr12 52033838 52033952 -91752503 + MIR SINE MIR 4 124 -138 2474 147 35 8 chr12 52033986 52034380 -91752075 + MER47B DNA MER2_type 7 411 -7 2134 87 32 0 chr12 52034380 52034691 -91751764 + AluSq SINE Alu 1 320 0 185 214 107 18 chr12 52034765 52034821 -91751634 - L2 LINE L2 -54 3259 3199 229 312 117 0 chr12 52034987 52035064 -91751391 + L2 LINE L2 3228 3313 0 1806 118 81 0 chr12 52035282 52035554 -91750901 + AluSx SINE Alu 1 294 -18 418 77 91 0 chr12 52035554 52035780 -91750675 + (TA)n Simple_repeat Simple_repeat 1 246 0 2014 125 3 23 chr12 52035934 52036237 -91750218 + AluSx SINE Alu 4 300 -12 2228 104 13 0 chr12 52036396 52036703 -91749752 + AluSx SINE Alu 1 311 -1 1752 167 3 0 chr12 52036934 52037221 -91749234 - AluJb SINE Alu -24 288 1 22 0 0 0 chr12 52038635 52038657 -91747798 + AT_rich Low_complexity Low_complexity 1 22 0 1875 208 118 11 chr12 52039741 52040235 -91746220 - L1ME2 LINE L1 -10 6154 5609 2210 116 13 0 chr12 52040372 52040673 -91745782 + AluSx SINE Alu 1 305 -7 1366 159 144 0 chr12 52040841 52041112 -91745343 - AluJo SINE Alu -2 310 1 342 233 37 0 chr12 52041277 52041381 -91745074 - L1ME2 LINE L1 -569 5593 5480 841 266 93 74 chr12 52041825 52042393 -91744062 - L1ME3A LINE L1 -230 5940 5362 1270 161 128 22 chr12 52042394 52042668 -91743787 - AluSg1 SINE Alu -6 303 1 610 154 51 17 chr12 52042675 52042792 -91743663 - L1MA4A LINE L1 -3 6300 6180 2012 146 187 33 chr12 52042792 52042936 -91743519 - L1MA4 LINE L1 -184 6116 5996 1860 138 55 0 chr12 52042936 52043226 -91743229 - AluJb SINE Alu -6 306 1 2012 146 187 33 chr12 52043226 52043568 -91742887 - L1MA4 LINE L1 -304 5996 5555 1774 161 7 24 chr12 52043588 52043886 -91742569 + AluJb SINE Alu 1 293 -19 3106 119 54 53 chr12 52043906 52044146 -91742309 - Tigger3b DNA MER2_type -2457 571 333 2183 82 43 4 chr12 52044146 52044427 -91742028 - AluY SINE Alu -19 292 1 3106 119 54 53 chr12 52044427 52044756 -91741699 - Tigger3b DNA MER2_type -2695 333 1 2285 115 0 0 chr12 52045442 52045747 -91740708 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 52045818 52045847 -91740608 + AT_rich Low_complexity Low_complexity 1 29 0 1668 167 32 3 chr12 52046447 52046729 -91739726 - AluJo SINE Alu -22 290 1 206 250 0 0 chr12 52046790 52046842 -91739613 + (TA)n Simple_repeat Simple_repeat 1 52 0 336 151 0 0 chr12 52046966 52047019 -91739436 + MADE1 DNA Mariner 28 80 0 995 157 68 21 chr12 52047155 52047346 -91739109 - MER3 DNA MER1_type 0 209 10 1281 210 25 45 chr12 52047463 52047777 -91738678 - AluJo SINE Alu -4 308 1 1192 260 131 53 chr12 52047816 52048543 -91737912 - L2 LINE L2 0 3313 2529 508 204 108 24 chr12 52048570 52048737 -91737718 + L1ME1 LINE L1 5981 6161 -5 2299 103 0 10 chr12 52048758 52049059 -91737396 + AluSx SINE Alu 1 298 -14 2208 96 4 0 chr12 52049146 52049459 -91736996 + AluSq SINE Alu 1 314 0 219 245 191 11 chr12 52049475 52049569 -91736886 + MIR SINE MIR 117 227 -35 1930 168 0 0 chr12 52049883 52050187 -91736268 - AluSx SINE Alu -8 304 1 496 185 0 0 chr12 52050242 52050323 -91736132 + AluSg1 SINE Alu 2 82 -227 1117 143 11 6 chr12 52050440 52050622 -91735833 + AluSq SINE Alu 118 300 -13 884 250 68 42 chr12 52050622 52051087 -91735368 + L1MEd LINE L1 952 1464 -4846 417 179 161 27 chr12 52051091 52051203 -91735252 + MSTA LTR MaLR 221 347 -81 240 163 0 0 chr12 52051218 52051261 -91735194 + L1PB1 LINE L1 6 48 -6815 723 249 10 5 chr12 52051300 52051493 -91734962 + L1PB1 LINE L1 6 199 -6664 * 13736 166 21 21 chr12 52051490 52055062 -91731393 + L1PB1 LINE L1 652 4503 -2364 2135 101 0 0 chr12 52055071 52055348 -91731107 + AluSx SINE Alu 1 277 -35 935 100 0 31 chr12 52055348 52055507 -91730948 + AluSg/x SINE Alu 169 325 0 13736 166 21 21 chr12 52055507 52057503 -91728952 + L1PB1 LINE L1 4503 6496 -371 2921 6 0 0 chr12 52057505 52057816 -91728639 + AluYb8 SINE Alu 1 311 -7 304 212 0 81 chr12 52057830 52057929 -91728526 + L1MC4 LINE L1 6613 6703 -1339 233 244 73 12 chr12 52057933 52058015 -91728440 + L1MC4 LINE L1 6617 6703 -1339 209 256 0 35 chr12 52058020 52058106 -91728349 + (TA)n Simple_repeat Simple_repeat 1 83 0 631 242 10 20 chr12 52058108 52058297 -91728158 + L1PB1 LINE L1 6470 6658 -209 785 213 5 11 chr12 52058399 52058587 -91727868 + L1PB3 LINE L1 4763 4949 -1197 2241 100 27 110 chr12 52058593 52059002 -91727453 + THE1C LTR MaLR 1 375 0 11388 105 10 42 chr12 52059002 52060634 -91725821 + THE1C-int LTR MaLR 1 1580 0 2154 131 17 26 chr12 52060639 52060990 -91725465 + THE1C LTR MaLR 2 349 -26 4828 156 18 40 chr12 52061070 52061785 -91724670 + L1PB3 LINE L1 4955 5632 -522 288 0 0 0 chr12 52061785 52061817 -91724638 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4828 156 18 40 chr12 52061817 52062327 -91724128 + L1PB3 LINE L1 5632 6152 -2 1850 151 0 30 chr12 52062431 52062736 -91723719 - AluJo SINE Alu -16 296 1 783 155 81 1 chr12 52063028 52063171 -91723284 + LTR47A LTR ERVL 288 452 0 350 295 32 0 chr12 52063218 52063313 -91723142 + L2 LINE L2 3196 3293 -20 242 205 32 108 chr12 52063329 52063514 -91722941 + L1ME3A LINE L1 5317 5487 -2321 2206 120 0 0 chr12 52063563 52063864 -91722591 + AluSx SINE Alu 1 301 -11 273 221 0 0 chr12 52063916 52063984 -91722471 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 1893 158 0 14 chr12 52063994 52064286 -91722169 - AluJo SINE Alu -24 288 1 572 274 91 61 chr12 52064290 52064646 -91721809 + L1ME3A LINE L1 5543 5934 -236 2146 183 135 15 chr12 52064646 52065104 -91721351 + MLT2B2 LTR ERVL 1 513 -2 988 198 68 0 chr12 52065146 52065338 -91721117 + MER3 DNA MER1_type 1 205 -4 1679 146 23 43 chr12 52065825 52066127 -91720328 + AluSx SINE Alu 6 301 -11 823 165 31 0 chr12 52066283 52066410 -91720045 + FLAM_C SINE Alu 2 132 -11 1723 243 50 33 chr12 52066535 52067084 -91719371 - MLT1F1 LTR MaLR -8 559 1 216 243 43 14 chr12 52067088 52067158 -91719297 - L2 LINE L2 -1635 1679 1608 1714 163 22 0 chr12 52067206 52067483 -91718972 - 7SLRNA srpRNA srpRNA -4 316 34 2028 140 62 3 chr12 52068210 52068568 -91717887 - MER31A LTR ERV1 0 485 107 183 296 0 0 chr12 52069101 52069145 -91717310 - MIR SINE MIR -110 152 109 24 0 0 0 chr12 52069302 52069326 -91717129 + AT_rich Low_complexity Low_complexity 1 24 0 1316 32 6 26 chr12 52069928 52070084 -91716371 - L1PA7 LINE L1 -8 6146 5994 2129 128 3 3 chr12 52070092 52070396 -91716059 - AluSq SINE Alu -6 307 4 910 195 174 60 chr12 52070415 52070633 -91715822 - MER58B DNA MER1_type -2080 340 81 805 167 0 24 chr12 52070633 52070759 -91715696 + FLAM_C SINE Alu 5 127 -6 910 195 174 60 chr12 52070759 52070822 -91715633 - MER58B DNA MER1_type -2339 81 27 476 270 178 15 chr12 52070831 52071101 -91715354 + L2 LINE L2 1773 2086 -1228 4026 166 4 35 chr12 52071537 52072298 -91714157 - L1M3 LINE L1 -702 5478 4757 1776 182 13 3 chr12 52072298 52072600 -91713855 - AluJb SINE Alu -7 305 1 4026 166 4 35 chr12 52072600 52072775 -91713680 - L1M3 LINE L1 -1423 4757 4578 2511 34 10 0 chr12 52072780 52073078 -91713377 - AluY SINE Alu -10 301 1 358 89 0 0 chr12 52073199 52073255 -91713200 - AluSp/q SINE Alu -2 301 246 255 171 43 57 chr12 52073261 52073331 -91713124 + L1M4 LINE L1 4489 4557 -1589 2096 98 39 3 chr12 52073337 52073623 -91712832 + AluSx SINE Alu 2 297 -15 210 71 0 0 chr12 52073623 52073651 -91712804 + (TA)n Simple_repeat Simple_repeat 2 29 0 1746 186 14 0 chr12 52074585 52074880 -91711575 - AluJo SINE Alu -13 299 1 1574 208 17 28 chr12 52075093 52075453 -91711002 - L1ME1 LINE L1 0 6166 5811 921 235 52 28 chr12 52075477 52075766 -91710689 - L1ME1 LINE L1 -4 6162 5867 1634 186 3 20 chr12 52075953 52076254 -91710201 - AluJb SINE Alu -16 296 1 678 124 21 0 chr12 52076663 52076760 -91709695 + HY3 scRNA scRNA 1 99 -2 213 227 67 27 chr12 52076948 52077023 -91709432 - MIR SINE MIR -50 212 135 2013 158 0 0 chr12 52077242 52077546 -91708909 + AluSx SINE Alu 1 304 -8 4107 192 110 88 chr12 52078031 52079394 -91707061 + MER52A LTR ERV1 1 1474 -281 265 289 7 72 chr12 52079404 52079556 -91706899 + MER52A LTR ERV1 1607 1748 -7 194 300 0 0 chr12 52079586 52079636 -91706819 - L2 LINE L2 -4 3268 3219 180 303 40 40 chr12 52079909 52080008 -91706447 - L2 LINE L2 -1076 2238 2140 282 306 139 23 chr12 52080087 52080260 -91706195 + MIR SINE MIR 5 197 -65 872 148 0 8 chr12 52080279 52080407 -91706048 + FLAM_C SINE Alu 1 127 -16 2358 90 0 3 chr12 52080513 52080812 -91705643 - AluSq SINE Alu -14 299 2 1927 165 0 0 chr12 52080900 52081203 -91705252 + AluJb SINE Alu 1 303 -9 487 346 184 26 chr12 52081889 52082236 -91704219 + L2 LINE L2 2866 3267 -5 410 271 193 6 chr12 52082242 52082408 -91704047 - MIR SINE MIR -43 219 23 2266 103 37 17 chr12 52082685 52083034 -91703421 - LTR45B LTR ERV1 -131 358 3 534 268 33 7 chr12 52083160 52083313 -91703142 + MLT1K LTR MaLR 432 588 0 183 290 140 40 chr12 52083492 52083592 -91702863 + MIR SINE MIR 35 144 -64 805 172 0 0 chr12 52084824 52084940 -91701515 + FLAM_C SINE Alu 1 116 -17 2138 93 23 35 chr12 52084951 52085261 -91701194 - AluSg SINE Alu -4 306 1 380 179 0 71 chr12 52085497 52085581 -91700874 + LTR19C LTR ERV1 615 692 -87 2126 110 7 3 chr12 52085807 52086106 -91700349 + AluSp SINE Alu 1 300 -13 2194 102 7 20 chr12 52086111 52086414 -91700041 + AluSq SINE Alu 1 299 -14 1983 140 10 0 chr12 52087441 52087733 -91698722 - AluJb SINE Alu -17 295 1 506 276 69 37 chr12 52087758 52088004 -91698451 - L2 LINE L2 -909 2405 2152 1642 161 80 5 chr12 52088008 52088424 -91698031 + MER61D LTR ERV1 1 501 0 2043 124 3 3 chr12 52088564 52088854 -91697601 + AluSx SINE Alu 1 290 -22 425 237 127 0 chr12 52088889 52089007 -91697448 + MIR SINE MIR 75 207 -55 189 216 59 0 chr12 52089104 52089155 -91697300 + MIR SINE MIR 133 186 -76 1973 141 3 26 chr12 52089362 52089666 -91696789 + AluJb SINE Alu 1 297 -15 532 298 76 52 chr12 52089853 52090259 -91696196 - L1MC4a LINE L1 -1753 6055 5640 1779 132 80 0 chr12 52090640 52090929 -91695526 - AluSx SINE Alu 0 312 1 238 357 116 0 chr12 52091147 52091259 -91695196 - L2 LINE L2 0 3313 3189 185 214 107 18 chr12 52091394 52091450 -91695005 + L2 LINE L2 3199 3259 -54 201 94 0 0 chr12 52091524 52091556 -91694899 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2133 87 32 0 chr12 52091558 52091835 -91694620 - AluSq SINE Alu -27 286 1 2474 147 35 8 chr12 52091835 52092229 -91694226 - MER47B DNA MER2_type -7 411 7 355 254 97 35 chr12 52092263 52092377 -91694078 - MIR SINE MIR -138 124 4 874 181 0 0 chr12 52092570 52092703 -91693752 - FLAM_C SINE Alu 0 133 1 938 276 82 55 chr12 52093287 52093676 -91692779 + L1MEc LINE L1 2134 2511 -3704 1984 117 15 62 chr12 52093676 52094001 -91692454 + AluSq SINE Alu 1 310 -3 938 276 82 55 chr12 52094001 52094217 -91692238 + L1MEc LINE L1 2511 2732 -3483 776 204 23 6 chr12 52094217 52094389 -91692066 - MER104 DNA MER2_type -4 176 2 938 276 82 55 chr12 52094389 52094514 -91691941 + L1MEc LINE L1 2732 2852 -3363 1303 213 16 25 chr12 52094518 52094837 -91691618 - L1M4 LINE L1 -1336 6229 5914 * 10361 153 140 8 chr12 52094829 52096704 -91689751 - L1M4 LINE L1 -5434 2131 11 1889 133 11 11 chr12 52096716 52097001 -91689454 - AluJb SINE Alu -27 285 1 839 222 28 19 chr12 52097003 52097219 -91689236 - L1M4 LINE L1 -2302 5263 5046 23 121 0 0 chr12 52097220 52097369 -91689086 + AT_rich Low_complexity Low_complexity 1 149 0 390 317 81 39 chr12 52097817 52098126 -91688329 + MLT1K LTR MaLR 150 471 -117 2040 132 31 0 chr12 52098249 52098538 -91687917 - AluSx SINE Alu -14 298 1 516 192 83 45 chr12 52098538 52098694 -91687761 + L1MC5 LINE L1 7752 7913 -48 695 285 28 8 chr12 52098715 52098968 -91687487 + L1M4 LINE L1 4909 5166 -980 4165 196 4 0 chr12 52098969 52099786 -91686669 + L1PB3 LINE L1 4130 4949 -1197 2277 95 27 112 chr12 52099792 52100202 -91686253 + THE1C LTR MaLR 1 375 0 11319 106 10 43 chr12 52100202 52101835 -91684620 + THE1C-int LTR MaLR 1 1580 0 2154 131 17 26 chr12 52101840 52102191 -91684264 + THE1C LTR MaLR 2 349 -26 4828 156 18 40 chr12 52102271 52102986 -91683469 + L1PB3 LINE L1 4955 5632 -522 342 0 0 0 chr12 52102986 52103024 -91683431 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4828 156 18 40 chr12 52103024 52103534 -91682921 + L1PB3 LINE L1 5632 6152 -2 1833 144 3 33 chr12 52103638 52103944 -91682511 - AluJo SINE Alu -15 297 1 1659 172 15 0 chr12 52103963 52104236 -91682219 - AluJo SINE Alu -23 289 13 1452 243 86 9 chr12 52104815 52105234 -91681221 - L2 LINE L2 -967 2347 1897 1682 149 53 30 chr12 52105411 52105713 -91680742 - AluJo SINE Alu -3 309 1 2347 89 3 0 chr12 52105786 52106078 -91680377 - AluSg SINE Alu -17 293 1 723 227 104 14 chr12 52106201 52106421 -91680034 - Charlie1 DNA MER1_type -373 2388 2149 1025 158 22 22 chr12 52106421 52106604 -91679851 - AluJo SINE Alu -10 302 120 2145 133 0 10 chr12 52106605 52106914 -91679541 + AluSq SINE Alu 1 306 -7 1764 119 92 4 chr12 52107549 52107809 -91678646 - AluSq SINE Alu -30 283 1 234 0 0 0 chr12 52109010 52109036 -91677419 + (T)n Simple_repeat Simple_repeat 1 26 0 2906 141 68 45 chr12 52109145 52109706 -91676749 + MER4B LTR ERV1 1 574 -36 702 218 8 15 chr12 52109977 52110110 -91676345 + FLAM_A SINE Alu 2 133 0 23 0 0 0 chr12 52110164 52110187 -91676268 + AT_rich Low_complexity Low_complexity 1 23 0 763 208 0 6 chr12 52110292 52110451 -91676004 - L1MA10 LINE L1 -3 6331 6174 391 164 0 0 chr12 52110553 52110626 -91675829 - LTR30 LTR ERV1 -98 624 552 841 121 4 17 chr12 52111118 52111339 -91675116 + AluSx SINE Alu 2 308 -4 884 199 157 70 chr12 52111341 52111698 -91674757 + L1ME3 LINE L1 5773 6160 -2 405 292 78 0 chr12 52111726 52111918 -91674537 + L1M4 LINE L1 3289 3495 -2651 3791 123 25 16 chr12 52111925 52112675 -91673780 - MER61-int LTR ERV1 -2404 5054 2226 5935 120 81 69 chr12 52112675 52113303 -91673152 - MER61-int LTR ERV1 -3196 2021 1373 3366 160 52 20 chr12 52113303 52113896 -91672559 - LTR9 LTR ERV1 0 612 1 5935 120 81 69 chr12 52113896 52114408 -91672047 - MER61-int LTR ERV1 -3844 1373 868 636 212 0 0 chr12 52114408 52114521 -91671934 + LTR8 LTR ERV1 1 113 -578 4376 209 58 58 chr12 52114622 52115089 -91671366 - L1 LINE L1 -937 5209 4743 2109 116 10 3 chr12 52115089 52115383 -91671072 - AluSx SINE Alu -12 300 5 4376 209 58 58 chr12 52115383 52116603 -91669852 - L1 LINE L1 -1403 4743 3397 747 169 130 77 chr12 52116767 52116974 -91669481 - MER20 DNA MER1_type -1 218 1 383 256 126 20 chr12 52116984 52117238 -91669217 - L1MEc LINE L1 -893 1683 1536 2183 120 3 6 chr12 52117246 52117563 -91668892 - L1PB1 LINE L1 0 6151 5836 591 303 45 28 chr12 52117683 52117973 -91668482 + L1MD1 LINE L1 5946 6240 -2 372 325 35 39 chr12 52118070 52118325 -91668130 + L1MEd LINE L1 457 710 -5409 26 64 0 0 chr12 52118325 52118372 -91668083 + AT_rich Low_complexity Low_complexity 1 47 0 506 259 73 63 chr12 52118414 52118621 -91667834 + L1MEd LINE L1 660 873 -5246 2303 63 3 7 chr12 52118621 52118928 -91667527 - AluY SINE Alu 0 306 1 506 259 73 63 chr12 52118928 52119020 -91667435 + L1MEd LINE L1 873 963 -5156 681 190 44 0 chr12 52119020 52119157 -91667298 + AluSq/x SINE Alu 2 144 -169 692 184 0 0 chr12 52119258 52119367 -91667088 + AluSg/x SINE Alu 193 301 -9 848 178 7 13 chr12 52119965 52120117 -91666338 + AluJb SINE Alu 1 151 -161 551 143 39 110 chr12 52120118 52120272 -91666183 + AluJo SINE Alu 32 174 -138 1668 142 7 35 chr12 52120409 52120549 -91665906 + AluJo SINE Alu 2 131 -181 2138 104 28 3 chr12 52120549 52120838 -91665617 + AluSx SINE Alu 1 296 -16 1668 142 7 35 chr12 52120838 52120986 -91665469 + AluJo SINE Alu 131 282 -30 629 254 155 6 chr12 52121065 52121246 -91665209 + MLT2F LTR ERVL 402 609 -54 285 203 63 0 chr12 52121316 52121395 -91665060 - FRAM SINE Alu -30 136 53 2150 121 0 10 chr12 52122283 52122452 -91664003 - AluSx SINE Alu -10 302 136 2104 125 10 0 chr12 52122452 52122741 -91663714 - AluSg SINE Alu -18 292 1 2150 121 0 10 chr12 52122741 52122876 -91663579 - AluSx SINE Alu -176 136 1 317 271 62 10 chr12 52122902 52122998 -91663457 - MIR SINE MIR -113 149 49 1035 194 45 5 chr12 52123202 52123403 -91663052 + AluJb SINE Alu 85 293 -19 2025 115 20 0 chr12 52123474 52123769 -91662686 - AluSx SINE Alu -11 301 1 2326 100 0 10 chr12 52123776 52124087 -91662368 - AluSc SINE Alu -1 308 1 2268 121 0 7 chr12 52124311 52124617 -91661838 - AluSx SINE Alu -8 304 1 1712 144 12 0 chr12 52125354 52125610 -91660845 - AluJo SINE Alu -16 296 38 535 262 125 113 chr12 52126601 52126768 -91659687 - L2 LINE L2 -1 3271 3107 1994 127 3 7 chr12 52126768 52126897 -91659558 + AluSq SINE Alu 1 129 -184 225 0 0 0 chr12 52126897 52126922 -91659533 + (CA)n Simple_repeat Simple_repeat 2 26 0 1994 127 3 7 chr12 52126922 52127083 -91659372 + AluSq SINE Alu 129 290 -23 2247 112 10 0 chr12 52127083 52127378 -91659077 + AluSx SINE Alu 1 299 -13 535 262 125 113 chr12 52127378 52127553 -91658902 - L2 LINE L2 -164 3108 2924 1376 278 101 47 chr12 52127591 52127752 -91658703 - MLT2F LTR ERVL -6 657 506 2225 135 0 0 chr12 52127752 52128063 -91658392 + AluSx SINE Alu 1 311 -1 1376 278 101 47 chr12 52128063 52128523 -91657932 - MLT2F LTR ERVL -157 506 2 1830 234 101 63 chr12 52128524 52129145 -91657310 - ERVL-F LTR ERVL -8 5756 5112 1777 231 51 3 chr12 52129169 52129558 -91656897 - ERVL LTR ERVL -2993 2771 2364 772 178 42 0 chr12 52129568 52129686 -91656769 - FLAM_C SINE Alu -19 124 2 3376 257 60 25 chr12 52129686 52129776 -91656679 - ERVL LTR ERVL -3386 2378 2293 1869 164 0 29 chr12 52129776 52130087 -91656368 - AluJo SINE Alu -10 302 1 3376 257 60 25 chr12 52130087 52131039 -91655416 - ERVL LTR ERVL -3471 2293 1256 1326 152 5 49 chr12 52131039 52131263 -91655192 - MER20 DNA MER1_type -4 215 2 3376 257 60 25 chr12 52131263 52131334 -91655121 - ERVL LTR ERVL -4508 1256 1189 460 164 107 64 chr12 52131608 52131748 -91654707 + L1MC4 LINE L1 5690 5835 -1973 558 175 10 0 chr12 52132065 52132162 -91654293 - L1MC4 LINE L1 -1037 7005 6908 2179 115 3 0 chr12 52132162 52132457 -91653998 - AluSx SINE Alu -2 310 15 359 283 28 28 chr12 52132579 52132724 -91653731 - MER117 DNA MER1_type -50 147 3 180 0 0 0 chr12 52133005 52133025 -91653430 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 558 148 98 0 chr12 52133025 52133147 -91653308 + L1MC4 LINE L1 7006 7139 -903 1105 127 6 6 chr12 52133151 52133309 -91653146 - AluSg/x SINE Alu -21 289 132 2311 93 0 22 chr12 52133309 52133622 -91652833 - AluSx SINE Alu -6 306 1 2774 208 81 58 chr12 52133649 52133864 -91652591 + L1MC4 LINE L1 7157 7366 -676 674 246 58 43 chr12 52133864 52134071 -91652384 - MER63A DNA MER1_type 0 210 1 2774 208 81 58 chr12 52134071 52134276 -91652179 + L1MC4 LINE L1 7366 7565 -477 2124 128 0 10 chr12 52134276 52134588 -91651867 + AluSq SINE Alu 1 309 -4 2774 208 81 58 chr12 52134588 52135030 -91651425 + L1MC4 LINE L1 7565 8040 -2 272 250 54 0 chr12 52136097 52136153 -91650302 + L2 LINE L2 3208 3266 -6 266 290 0 0 chr12 52136867 52136929 -91649526 + MIR SINE MIR 201 262 0 919 182 0 0 chr12 52137221 52137400 -91649055 + FRAM SINE Alu 1 43 0 1665 112 0 5 chr12 52137651 52137874 -91648581 + AluSx SINE Alu 1 222 -90 2238 119 0 0 chr12 52138751 52139044 -91647411 + AluSx SINE Alu 1 293 -19 312 300 29 21 chr12 52139421 52139561 -91646894 - L1ME LINE L1 -420 5701 5561 1945 146 42 0 chr12 52139849 52140137 -91646318 - AluSx SINE Alu -9 303 4 712 240 0 17 chr12 52140137 52140316 -91646139 + L1M4 LINE L1 4513 4688 -1458 1758 84 0 0 chr12 52140317 52140542 -91645913 - AluY SINE Alu -12 299 75 1134 121 0 6 chr12 52140644 52140809 -91645646 + AluSg/x SINE Alu 130 293 -19 778 142 17 25 chr12 52140823 52140943 -91645512 + FLAM_C SINE Alu 2 120 -23 1900 145 14 0 chr12 52140963 52141246 -91645209 - AluSx SINE Alu -23 289 3 21 0 0 0 chr12 52141255 52141276 -91645179 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr12 52141321 52141349 -91645106 + (A)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 52141652 52141679 -91644776 + (CA)n Simple_repeat Simple_repeat 2 28 0 243 61 0 0 chr12 52141797 52141830 -91644625 + (CA)n Simple_repeat Simple_repeat 2 34 0 547 280 89 30 chr12 52142270 52142506 -91643949 + MIR SINE MIR 7 256 -6 697 83 0 0 chr12 52143196 52143280 -91643175 + AluSp/q SINE Alu 208 291 -22 2337 106 3 0 chr12 52143351 52143654 -91642801 + AluSx SINE Alu 1 304 -8 502 232 126 72 chr12 52144087 52144350 -91642105 + Charlie2 DNA MER1_type 19 295 -2567 1238 232 56 24 chr12 52144352 52144693 -91641762 + Charlie2 DNA MER1_type 1852 2203 -659 2094 91 47 7 chr12 52144771 52145068 -91641387 - AluSp SINE Alu -4 309 1 2119 112 7 3 chr12 52145068 52145363 -91641092 - AluSc SINE Alu -12 297 2 1481 229 26 7 chr12 52145368 52145723 -91640732 - L1MC/D LINE L1 -693 5651 5312 1084 166 0 0 chr12 52145996 52146165 -91640290 - AluY SINE Alu -23 288 120 2304 184 51 65 chr12 52146227 52146739 -91639716 + MLT1D LTR MaLR 1 505 0 1202 56 0 0 chr12 52147033 52147177 -91639278 - L1PA5 LINE L1 -3 6151 6008 13247 34 4 0 chr12 52147177 52149050 -91637405 - L1P2 LINE L1 -469 5685 3805 2254 116 0 0 chr12 52149053 52149347 -91637108 - AluSx SINE Alu -18 294 1 599 157 0 74 chr12 52149477 52149585 -91636870 - AluS SINE Alu -212 101 2 288 282 148 83 chr12 52150032 52150229 -91636226 - L2 LINE L2 0 3272 3042 2423 71 7 0 chr12 52150229 52150523 -91635932 - AluY SINE Alu -15 296 1 288 282 148 83 chr12 52150523 52150662 -91635793 - L2 LINE L2 -230 3042 2914 1814 133 0 0 chr12 52151065 52151320 -91635135 - AluSq SINE Alu -58 255 1 655 117 0 36 chr12 52151334 52151445 -91635010 - FRAM SINE Alu 0 176 70 583 250 56 44 chr12 52151536 52151716 -91634739 + MIR SINE MIR 2 183 -79 802 123 0 0 chr12 52151716 52151830 -91634625 - FLAM_C SINE Alu -13 130 17 182 359 0 0 chr12 52151853 52151917 -91634538 + MIR SINE MIR 190 253 -9 1326 153 217 8 chr12 52151971 52152247 -91634208 + LTR18B LTR ERVL 251 357 0 275 71 24 0 chr12 52152248 52152290 -91634165 + HY3 scRNA scRNA 38 80 -21 1187 195 18 18 chr12 52152290 52152516 -91633939 - AluJb SINE Alu -24 288 63 1896 118 3 49 chr12 52154659 52154816 -91631639 - AluJb SINE Alu -21 291 153 2459 48 7 3 chr12 52154816 52155111 -91631344 - AluSp SINE Alu -17 296 1 1896 118 3 49 chr12 52155111 52155258 -91631197 - AluJb SINE Alu -159 153 1 321 282 49 21 chr12 52156563 52156705 -91629750 + MIR SINE MIR 72 217 -45 1799 101 119 11 chr12 52157327 52157605 -91628850 - AluSq SINE Alu -5 308 1 1203 167 24 14 chr12 52158014 52158224 -91628231 - AluJb SINE Alu -31 281 70 1875 171 3 0 chr12 52158534 52158839 -91627616 - AluJb SINE Alu -6 306 1 798 116 7 51 chr12 52159575 52159713 -91626742 - FLAM_C SINE Alu -1 132 1 2223 114 0 3 chr12 52160361 52160658 -91625797 - AluSx SINE Alu -16 296 1 1746 145 17 84 chr12 52160732 52160902 -91625553 + MER2 DNA MER2_type 11 146 -199 1622 180 50 4 chr12 52160902 52161180 -91625275 - AluJo SINE Alu -21 291 1 1746 145 17 84 chr12 52161180 52161368 -91625087 + MER2 DNA MER2_type 146 345 0 947 141 116 120 chr12 52161704 52161945 -91624510 + AluJo SINE Alu 61 300 -12 2129 130 10 0 chr12 52162056 52162356 -91624099 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr12 52162725 52162747 -91623708 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr12 52163209 52163236 -91623219 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1371 149 137 8 chr12 52163239 52163488 -91622967 - AluJb SINE Alu -31 281 1 2259 113 6 0 chr12 52163577 52163888 -91622567 - AluSq SINE Alu 0 313 1 283 143 0 0 chr12 52164025 52164074 -91622381 - L1MC4 LINE L1 -2 8040 7992 755 262 72 50 chr12 52164564 52164923 -91621532 - L1MC4a LINE L1 -1850 5958 5592 1740 145 27 47 chr12 52164979 52165129 -91621326 - AluJb SINE Alu -11 291 148 2473 80 0 19 chr12 52165129 52165303 -91621152 - AluSq SINE Alu -7 306 139 2077 129 7 3 chr12 52165303 52165598 -91620857 - AluSg SINE Alu -14 296 1 2473 80 0 19 chr12 52165598 52165735 -91620720 - AluSq SINE Alu -174 139 1 1740 145 27 47 chr12 52165735 52165881 -91620574 - AluJb SINE Alu -154 148 1 1475 87 5 10 chr12 52165917 52166112 -91620343 + AluSc SINE Alu 1 194 -115 2273 97 3 31 chr12 52166487 52166807 -91619648 - AluSx SINE Alu -1 311 1 2276 91 3 10 chr12 52166825 52167122 -91619333 - AluSx SINE Alu -17 295 1 216 0 0 0 chr12 52167124 52167148 -91619307 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2055 124 0 3 chr12 52167148 52167431 -91619024 - AluSx SINE Alu -30 282 1 22 0 0 0 chr12 52167632 52167654 -91618801 + AT_rich Low_complexity Low_complexity 1 22 0 750 86 9 19 chr12 52167759 52167864 -91618591 + U6 snRNA snRNA 1 104 -3 2382 92 0 0 chr12 52167881 52168176 -91618279 + AluSx SINE Alu 3 297 -15 1003 183 6 0 chr12 52168245 52168414 -91618041 - AluJb SINE Alu -13 299 130 1559 114 0 32 chr12 52168488 52168708 -91617747 + AluSq SINE Alu 86 298 -15 2297 114 3 0 chr12 52170138 52170446 -91616009 + AluSg SINE Alu 1 309 -1 2012 106 7 3 chr12 52170571 52170854 -91615601 + AluY SINE Alu 1 284 -27 433 97 16 0 chr12 52170937 52170999 -91615456 - U7 snRNA snRNA 0 63 1 2132 113 14 0 chr12 52171468 52171760 -91614695 - AluSx SINE Alu -12 300 5 1915 119 0 21 chr12 52171775 52172099 -91614356 - AluSq SINE Alu 0 320 3 186 71 0 0 chr12 52173646 52173674 -91612781 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 216 0 0 0 chr12 52173673 52173697 -91612758 + (CA)n Simple_repeat Simple_repeat 2 25 0 428 118 26 0 chr12 52173705 52173781 -91612674 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 1384 162 0 21 chr12 52173784 52174025 -91612430 - AluJo SINE Alu -23 289 54 1893 168 0 0 chr12 52174068 52174359 -91612096 + AluJb SINE Alu 14 304 -8 2301 114 0 0 chr12 52174361 52174660 -91611795 + AluSx SINE Alu 1 299 -13 5391 123 20 40 chr12 52174661 52174950 -91611505 - MER4D LTR ERV1 -10 893 600 1498 156 107 35 chr12 52174950 52175239 -91611216 + AluJo SINE Alu 3 312 0 5391 123 20 40 chr12 52175239 52175667 -91610788 - MER4D LTR ERV1 -303 600 194 2082 110 3 21 chr12 52175667 52175980 -91610475 - AluSp SINE Alu 0 308 1 5391 123 20 40 chr12 52175980 52176167 -91610288 - MER4D LTR ERV1 -709 194 5 225 175 25 0 chr12 52176172 52176212 -91610243 - Alu SINE Alu -115 186 146 248 280 131 28 chr12 52176873 52176980 -91609475 - MIR SINE MIR -70 138 21 652 112 45 15 chr12 52177852 52177986 -91608469 + L1MA3 LINE L1 6168 6305 0 1823 173 0 37 chr12 52178022 52178345 -91608110 - AluJo SINE Alu -1 311 1 25 31 0 0 chr12 52178375 52178407 -91608048 + AT_rich Low_complexity Low_complexity 1 32 0 1810 132 7 54 chr12 52178407 52178735 -91607720 - AluSx SINE Alu 0 314 1 2380 84 3 0 chr12 52178738 52179035 -91607420 - AluSg SINE Alu -12 298 1 2276 102 0 0 chr12 52179046 52179331 -91607124 - AluSg SINE Alu -25 285 1 2308 129 0 0 chr12 52179337 52179646 -91606809 - AluSx SINE Alu -3 309 1 1651 204 0 0 chr12 52179648 52179927 -91606528 - AluJb SINE Alu -23 289 11 823 166 30 30 chr12 52180160 52180329 -91606126 - AluJ SINE Alu -24 288 120 229 111 0 74 chr12 52180331 52180385 -91606070 - L1PA14 LINE L1 0 6161 6112 189 107 0 0 chr12 52180385 52180413 -91606042 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 405 79 32 0 chr12 52180413 52180476 -91605979 - MER41B LTR ERV1 -90 545 481 1516 85 0 0 chr12 52180476 52180676 -91605779 - L1PA14 LINE L1 -33 6128 5929 857 153 30 0 chr12 52180676 52180807 -91605648 - AluJ SINE Alu -177 135 1 2466 77 3 0 chr12 52180817 52181114 -91605341 - AluSx SINE Alu -14 298 1 2195 112 10 16 chr12 52181960 52182274 -91604181 - AluSx SINE Alu 0 312 1 1875 159 0 10 chr12 52183613 52183921 -91602534 - AluSx SINE Alu -7 305 1 2218 119 3 0 chr12 52183979 52184290 -91602165 - AluSx SINE Alu 0 312 1 1670 167 76 0 chr12 52184290 52184578 -91601877 - AluJo SINE Alu -2 310 1 878 198 38 0 chr12 52184759 52184916 -91601539 + AluJb SINE Alu 134 296 -16 2156 111 3 13 chr12 52185397 52185704 -91600751 - AluSx SINE Alu -8 304 1 2168 108 10 3 chr12 52186684 52186972 -91599483 - AluSx SINE Alu -22 290 1 2161 113 3 26 chr12 52187653 52187963 -91598492 + AluSx SINE Alu 1 303 -9 1775 167 13 10 chr12 52187983 52188154 -91598301 - AluJb SINE Alu -6 306 132 2219 103 3 13 chr12 52188154 52188456 -91597999 - AluSp SINE Alu -14 299 1 1775 167 13 10 chr12 52188456 52188589 -91597866 - AluJb SINE Alu -180 132 1 322 220 60 10 chr12 52188609 52188709 -91597746 + MER103 DNA DNA 52 156 -10 28 0 0 0 chr12 52188787 52188815 -91597640 + AT_rich Low_complexity Low_complexity 1 28 0 2296 110 3 3 chr12 52189239 52189549 -91596906 - AluSx SINE Alu -2 310 1 948 136 0 0 chr12 52191288 52191413 -91595042 + FLAM_C SINE Alu 1 125 -18 28 29 0 0 chr12 52191871 52191906 -91594549 + AT_rich Low_complexity Low_complexity 1 35 0 1988 156 0 3 chr12 52192500 52192788 -91593667 - AluSx SINE Alu -25 287 1 1777 166 3 28 chr12 52192982 52193301 -91593154 + AluJo SINE Alu 1 311 -1 2070 103 14 14 chr12 52196986 52197276 -91589179 - AluSx SINE Alu -22 290 1 840 135 0 23 chr12 52197276 52197409 -91589046 - AluJb SINE Alu -182 130 1 334 210 60 10 chr12 52197429 52197529 -91588926 + MER103 DNA DNA 52 156 -10 27 0 0 0 chr12 52197607 52197634 -91588821 + AT_rich Low_complexity Low_complexity 1 27 0 2139 93 13 29 chr12 52198055 52198368 -91588087 - AluSc SINE Alu -1 308 1 1661 86 9 0 chr12 52198379 52198612 -91587843 - L1MA2 LINE L1 0 6304 6070 1119 253 83 62 chr12 52198613 52199136 -91587319 - L1MEc LINE L1 -4297 2099 1559 2355 86 3 13 chr12 52199136 52199449 -91587006 - AluSg SINE Alu 0 310 1 1119 253 83 62 chr12 52199449 52199565 -91586890 - L1MEc LINE L1 -4837 1559 1447 766 234 51 19 chr12 52199582 52199796 -91586659 - L1MC5 LINE L1 -1117 6844 6624 1838 177 41 6 chr12 52199917 52200261 -91586194 + MLT1A1 LTR MaLR 1 356 -9 407 232 80 36 chr12 52200405 52200543 -91585912 + L1MC4 LINE L1 7759 7902 -140 375 217 47 8 chr12 52200593 52200722 -91585733 + L1MC4 LINE L1 7905 8038 -4 1683 144 45 14 chr12 52200830 52201121 -91585334 - AluJb SINE Alu -12 300 1 1907 147 35 0 chr12 52201169 52201454 -91585001 - AluJb SINE Alu -17 295 1 23 68 0 0 chr12 52201499 52201543 -91584912 + AT_rich Low_complexity Low_complexity 1 44 0 1376 184 76 18 chr12 52201819 52202096 -91584359 + AluJo SINE Alu 13 305 -7 1775 177 10 0 chr12 52202345 52202633 -91583822 + AluJb SINE Alu 1 291 -21 2041 134 19 3 chr12 52203302 52203609 -91582846 - AluSx SINE Alu 0 312 1 21 100 0 0 chr12 52203971 52204041 -91582414 + AT_rich Low_complexity Low_complexity 1 70 0 1311 173 36 5 chr12 52205538 52205917 -91580538 + L1M4 LINE L1 5106 5494 -690 1976 128 7 39 chr12 52205917 52206223 -91580232 + AluSx SINE Alu 1 296 -16 1104 163 0 0 chr12 52206824 52206990 -91579465 - AluSg/x SINE Alu -13 299 134 2340 102 0 7 chr12 52206990 52207295 -91579160 - AluSx SINE Alu -9 303 1 625 176 0 0 chr12 52207298 52207406 -91579049 - L1M4 LINE L1 -623 5561 5454 820 268 147 65 chr12 52207441 52207857 -91578598 - L1M4 LINE L1 -1801 4345 3965 1766 173 13 7 chr12 52207857 52208163 -91578292 - AluJo SINE Alu -4 308 1 820 268 147 65 chr12 52208163 52208179 -91578276 - L1M4 LINE L1 -2181 3965 3952 1472 207 43 0 chr12 52208179 52208478 -91577977 - AluJo SINE Alu 0 312 1 820 268 147 65 chr12 52208478 52208540 -91577915 - L1M4 LINE L1 -2194 3952 3897 1598 195 0 24 chr12 52208540 52208837 -91577618 - AluJo SINE Alu -22 290 1 820 268 147 65 chr12 52208837 52209510 -91576945 - L1M4 LINE L1 -2249 3897 3080 275 196 39 0 chr12 52209510 52209561 -91576894 - AluSp SINE Alu -115 188 136 958 131 0 14 chr12 52209571 52209716 -91576739 - FLAM_C SINE Alu 0 143 1 405 0 0 0 chr12 52209841 52209886 -91576569 + (TA)n Simple_repeat Simple_repeat 1 45 0 2112 94 30 7 chr12 52209894 52210192 -91576263 - AluSg SINE Alu 0 310 6 360 244 73 24 chr12 52210207 52210412 -91576043 - L1M4 LINE L1 -3119 3027 2813 2910 212 51 54 chr12 52210416 52210603 -91575852 - L1ME1 LINE L1 -5 6161 5975 2366 102 3 3 chr12 52210603 52210916 -91575539 + AluSp SINE Alu 1 313 0 2910 212 51 54 chr12 52210916 52211493 -91574962 - L1ME1 LINE L1 -191 5975 5397 1558 201 32 7 chr12 52211493 52211771 -91574684 - AluJo SINE Alu -27 285 1 2910 212 51 54 chr12 52211771 52211844 -91574611 - L1ME1 LINE L1 -769 5397 5325 1779 165 0 23 chr12 52211893 52212202 -91574253 - AluJb SINE Alu -10 302 1 250 267 23 23 chr12 52212421 52212507 -91573948 - L1ME1 LINE L1 -2310 3836 3751 2519 200 50 66 chr12 52212520 52212739 -91573716 - L1M4 LINE L1 -948 5198 4977 1775 174 65 31 chr12 52212739 52213090 -91573365 - MLT1A1 LTR MaLR -2 363 1 2519 200 50 66 chr12 52213090 52213302 -91573153 - L1M4 LINE L1 -1169 4977 4763 1538 203 14 7 chr12 52213302 52213588 -91572867 - AluJo SINE Alu -24 288 1 2519 200 50 66 chr12 52213588 52213901 -91572554 - L1M4 LINE L1 -1383 4763 4465 373 155 119 0 chr12 52214030 52214114 -91572341 - L1ME2 LINE L1 -284 5880 5787 1044 160 105 0 chr12 52214114 52214295 -91572160 + MSTA LTR MaLR 1 200 -226 1766 180 0 3 chr12 52214295 52214584 -91571871 + AluJo SINE Alu 1 288 -24 14034 229 26 15 chr12 52214699 52216411 -91570044 + L1PA15 LINE L1 1266 2958 -3839 2012 141 14 0 chr12 52216411 52216702 -91569753 - AluSg SINE Alu -15 295 1 14034 229 26 15 chr12 52216702 52219162 -91567293 + L1PA15 LINE L1 2958 5488 -1309 6055 127 24 3 chr12 52219163 52220216 -91566239 + L1PA15 LINE L1 5731 6811 -5 1337 153 42 4 chr12 52220224 52220460 -91565995 + MSTA LTR MaLR 184 428 0 686 200 117 6 chr12 52220460 52220640 -91565815 - L1ME2 LINE L1 -2251 5791 5592 2006 148 0 16 chr12 52220674 52220991 -91565464 - AluJb SINE Alu 0 312 1 315 249 189 18 chr12 52220995 52221212 -91565243 - L1ME4a LINE L1 -25 6096 5843 565 253 25 6 chr12 52221234 52221396 -91565059 - L1ME4a LINE L1 -386 5735 5571 198 0 0 0 chr12 52221653 52221675 -91564780 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2340 72 0 44 chr12 52221772 52222139 -91564316 - AluY SINE Alu 0 311 1 203 190 190 25 chr12 52222639 52222718 -91563737 - L2 LINE L2 -1 3271 3180 942 136 0 0 chr12 52223878 52224003 -91562452 + FLAM_C SINE Alu 1 125 -18 28 29 0 0 chr12 52224461 52224496 -91561959 + AT_rich Low_complexity Low_complexity 1 35 0 1972 156 0 3 chr12 52225090 52225378 -91561077 - AluSx SINE Alu -25 287 1 1533 163 12 41 chr12 52225572 52225892 -91560563 + AluJo SINE Alu 1 311 -1 395 271 175 23 chr12 52229464 52229641 -91556814 - MIR SINE MIR -27 235 32 1320 92 0 17 chr12 52229743 52229916 -91556539 - AluSc SINE Alu -139 170 1 214 102 51 102 chr12 52229922 52229981 -91556474 + MER5A DNA MER1_type 132 187 -2 1715 130 96 0 chr12 52231727 52232021 -91554434 - AluSx SINE Alu 0 320 2 1972 160 0 0 chr12 52232022 52232316 -91554139 - AluJb SINE Alu -18 294 1 44006 46 3 2 chr12 52233605 52239735 -91546720 - L1PA5 LINE L1 0 6154 22 518 185 19 37 chr12 52239735 52239843 -91546612 + MER99 DNA DNA 479 584 -244 2250 121 0 3 chr12 52241081 52241394 -91545061 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 52241412 52241433 -91545022 + AT_rich Low_complexity Low_complexity 1 21 0 2280 100 3 13 chr12 52242534 52242843 -91543612 - AluSx SINE Alu -6 306 1 2203 104 10 7 chr12 52242939 52243248 -91543207 - AluSx SINE Alu -2 310 1 453 227 55 8 chr12 52243392 52243520 -91542935 - L1M4 LINE L1 -2056 4090 3957 4531 117 34 43 chr12 52243526 52243925 -91542530 - L1PA16 LINE L1 -9 6157 5767 2453 67 3 0 chr12 52243925 52244225 -91542230 - AluY SINE Alu -10 301 1 4531 117 34 43 chr12 52244225 52244566 -91541889 - L1PA16 LINE L1 -399 5767 5424 1908 132 0 11 chr12 52244708 52244989 -91541466 + AluSx SINE Alu 19 296 -16 821 148 148 0 chr12 52245000 52245135 -91541320 + AluY SINE Alu 149 303 -8 5109 84 35 7 chr12 52245135 52245829 -91540626 + L1PA11 LINE L1 5461 6173 -1 311 146 0 18 chr12 52245837 52245892 -91540563 + FAM SINE Alu 121 174 -1 2272 111 3 0 chr12 52245955 52246262 -91540193 + AluSp SINE Alu 1 308 -5 670 143 0 92 chr12 52246303 52246422 -91540033 + FLAM_C SINE Alu 1 108 -35 4415 80 13 2 chr12 52246427 52246975 -91539480 - MER41A LTR ERV1 0 554 1 12903 91 33 10 chr12 52246975 52247276 -91539179 - MER41A-int LTR ERV1 -2 5944 5651 2254 128 0 0 chr12 52247276 52247582 -91538873 + AluSx SINE Alu 1 306 -6 12903 91 33 10 chr12 52247582 52249059 -91537396 - MER41A-int LTR ERV1 -295 5651 4125 2155 97 7 17 chr12 52249060 52249359 -91537096 - AluSx SINE Alu -16 296 1 4481 159 74 36 chr12 52249359 52250409 -91536046 - MER41A-int LTR ERV1 -1994 2886 1598 2355 103 0 0 chr12 52250409 52250710 -91535745 + AluSx SINE Alu 1 301 -11 4481 159 74 36 chr12 52250710 52251036 -91535419 - MER41A-int LTR ERV1 -3282 1598 1286 2311 71 3 26 chr12 52251038 52251346 -91535109 - AluSx SINE Alu -11 301 1 4066 141 92 39 chr12 52251357 52251917 -91534538 - MER41A-int LTR ERV1 -4825 1121 592 1321 26 26 0 chr12 52251917 52252070 -91534385 + L1PA2 LINE L1 5997 6153 -2 4066 141 92 39 chr12 52252070 52252493 -91533962 - MER41A-int LTR ERV1 -5354 592 3 4031 103 35 2 chr12 52252495 52253031 -91533424 - MER41A LTR ERV1 0 554 1 207 0 0 0 chr12 52253045 52253068 -91533387 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 297 20 7 chr12 52254119 52254267 -91532188 + C-rich Low_complexity Low_complexity 2 151 0 2092 78 0 15 chr12 52254517 52254786 -91531669 + AluY SINE Alu 47 311 0 1308 230 14 3 chr12 52255138 52255421 -91531034 + AluJo SINE Alu 5 290 -12 261 0 0 0 chr12 52255421 52255450 -91531005 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1950 139 3 3 chr12 52256038 52256348 -91530107 - AluSx SINE Alu -2 310 1 1652 148 10 24 chr12 52256893 52257184 -91529271 - AluJb SINE Alu -25 287 1 820 192 0 0 chr12 52257413 52257559 -91528896 - AluJb SINE Alu -30 282 137 497 167 0 62 chr12 52258154 52258250 -91528205 + AluJo/FLAM SINE Alu 37 126 -186 1606 193 3 0 chr12 52258251 52258562 -91527893 + AluSx SINE Alu 1 312 0 180 0 0 0 chr12 52259065 52259085 -91527370 + (CA)n Simple_repeat Simple_repeat 2 21 0 339 225 93 0 chr12 52259532 52259661 -91526794 + L1MC4 LINE L1 6999 7139 -903 1655 169 3 7 chr12 52259662 52259823 -91526632 - AluJb SINE Alu -18 294 133 2139 104 3 10 chr12 52259823 52260131 -91526324 - AluSx SINE Alu -6 306 1 1655 169 3 7 chr12 52260131 52260264 -91526191 - AluJb SINE Alu -179 133 1 243 231 77 10 chr12 52260281 52260385 -91526070 + MER103 DNA DNA 46 156 -10 189 0 0 0 chr12 52260463 52260484 -91525971 + (T)n Simple_repeat Simple_repeat 1 21 0 1186 123 0 0 chr12 52261047 52261210 -91525245 - AluJb SINE Alu -149 163 1 25 0 0 0 chr12 52261210 52261235 -91525220 + AT_rich Low_complexity Low_complexity 1 25 0 730 100 30 0 chr12 52261235 52261335 -91525120 - U6 snRNA snRNA -4 103 1 189 0 0 0 chr12 52261358 52261379 -91525076 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 423 119 30 0 chr12 52261579 52261646 -91524809 - AluSc SINE Alu -20 289 221 1906 139 20 0 chr12 52261672 52261973 -91524482 + AluSg SINE Alu 1 307 -3 2102 283 65 27 chr12 52262276 52263111 -91523344 - ERVL LTR ERVL -3599 2165 1256 1271 147 5 49 chr12 52263111 52263335 -91523120 - MER20 DNA MER1_type -4 215 2 2102 283 65 27 chr12 52263335 52263406 -91523049 - ERVL LTR ERVL -4508 1256 1189 1702 140 11 4 chr12 52263610 52263875 -91522580 + AluSx SINE Alu 38 304 -8 1687 180 0 0 chr12 52264020 52264314 -91522141 + AluSx SINE Alu 1 294 -18 960 239 167 49 chr12 52264809 52265245 -91521210 + MER52A LTR ERV1 1 569 -1186 2319 90 0 0 chr12 52265534 52265845 -91520610 - AluY SINE Alu 0 311 1 1572 181 10 3 chr12 52265854 52266158 -91520297 - AluSx SINE Alu -6 306 1 2096 95 0 22 chr12 52266254 52266569 -91519886 - AluY SINE Alu -2 309 2 1783 124 11 0 chr12 52266650 52266925 -91519530 - AluSq SINE Alu -9 304 27 5765 74 18 6 chr12 52267213 52268009 -91518446 + L1PA5 LINE L1 5350 6154 0 1909 102 16 38 chr12 52268118 52268432 -91518023 + AluSp SINE Alu 1 307 -6 1431 190 0 3 chr12 52268432 52268720 -91517735 + AluSc SINE Alu 1 288 -21 1842 123 20 3 chr12 52268983 52269275 -91517180 - AluSx SINE Alu -15 297 1 242 309 288 12 chr12 52269293 52269626 -91516829 - L2 LINE L2 -527 2787 2363 1697 149 31 7 chr12 52269678 52269967 -91516488 + AluJb SINE Alu 1 296 -16 843 173 0 0 chr12 52270573 52270706 -91515749 + FLAM_C SINE Alu 1 133 0 1446 155 3 74 chr12 52270724 52271020 -91515435 + AluJb SINE Alu 30 304 -8 246 180 40 0 chr12 52271182 52271232 -91515223 + Alu SINE Alu 249 300 -2 2345 66 0 35 chr12 52271234 52271553 -91514902 + AluSg SINE Alu 1 308 -2 573 239 93 54 chr12 52271554 52271834 -91514621 + L2 LINE L2 3022 3312 -1 2025 85 30 27 chr12 52271990 52272119 -91514336 + AluSx SINE Alu 1 128 -184 2003 110 0 0 chr12 52272119 52272431 -91514024 + AluSg SINE Alu 1 312 0 2025 85 30 27 chr12 52272431 52272595 -91513860 + AluSx SINE Alu 128 296 -16 359 268 173 8 chr12 52272648 52272775 -91513680 + MLT1K LTR MaLR 90 237 -351 690 124 41 50 chr12 52272845 52273003 -91513452 - AluJb SINE Alu 0 318 162 269 286 38 19 chr12 52273032 52273137 -91513318 + MLT1K LTR MaLR 324 430 -158 689 166 0 43 chr12 52273150 52273289 -91513166 + FLAM_C SINE Alu 1 133 0 606 143 0 38 chr12 52273458 52273563 -91512892 - AluSg/x SINE Alu -81 229 129 893 198 4 117 chr12 52273985 52274232 -91512223 - AluJo SINE Alu -92 220 2 1446 135 46 43 chr12 52274239 52274542 -91511913 - AluSx SINE Alu 0 304 1 1930 117 11 4 chr12 52274551 52274856 -91511599 - AluSq SINE Alu 0 307 1 2037 126 3 0 chr12 52275143 52275445 -91511010 - AluSx SINE Alu -9 303 1 354 278 112 54 chr12 52275483 52275706 -91510749 - L1MCa LINE L1 -4345 2081 1846 2084 114 3 10 chr12 52275710 52276017 -91510438 - AluSx SINE Alu -6 306 2 247 241 0 0 chr12 52276018 52276072 -91510383 - L1ME LINE L1 -341 5825 5772 483 138 25 0 chr12 52276173 52276253 -91510202 + AluSg/x SINE Alu 212 293 -16 747 280 12 45 chr12 52276623 52276819 -91509636 + MIR SINE MIR 28 216 -46 1625 181 27 0 chr12 52276819 52277111 -91509344 + AluJo SINE Alu 1 300 -12 747 280 12 45 chr12 52277111 52277157 -91509298 + MIR SINE MIR 216 262 0 237 108 0 0 chr12 52277302 52277339 -91509116 + (CTG)n Simple_repeat Simple_repeat 2 38 0 414 306 173 0 chr12 52277583 52277798 -91508657 + Charlie8 DNA MER1_type 76 1417 -1000 1762 149 6 19 chr12 52278149 52278464 -91507991 + AluJo SINE Alu 1 311 -1 1498 62 0 24 chr12 52278638 52278847 -91507608 + AluY SINE Alu 2 205 -106 1017 140 6 0 chr12 52278949 52279106 -91507349 - AluSx SINE Alu -154 158 1 2185 102 3 3 chr12 52279481 52279786 -91506669 - AluSp SINE Alu -7 306 2 1708 128 60 11 chr12 52279789 52280070 -91506385 - AluSg SINE Alu -10 300 6 2297 90 0 0 chr12 52280083 52280382 -91506073 - AluSg SINE Alu -11 299 1 2115 114 3 0 chr12 52280389 52280686 -91505769 - AluSx SINE Alu -14 298 1 263 208 0 0 chr12 52280688 52280736 -91505719 - L2 LINE L2 -4 3309 3262 289 245 296 10 chr12 52280916 52281014 -91505441 + MIR SINE MIR 23 148 -114 1012 63 47 0 chr12 52281039 52281166 -91505289 - MER4A LTR ERV1 0 664 532 2125 117 3 13 chr12 52281167 52281339 -91505116 - AluSp SINE Alu -7 306 137 2186 108 3 0 chr12 52281339 52281644 -91504811 - AluSp SINE Alu -7 306 1 2125 117 3 13 chr12 52281644 52281780 -91504675 - AluSp SINE Alu -176 137 1 2183 92 0 20 chr12 52281787 52282092 -91504363 - AluSg SINE Alu -11 299 1 214 333 28 0 chr12 52282092 52282164 -91504291 - L2 LINE L2 -559 2755 2682 914 199 161 52 chr12 52282314 52282581 -91503874 + AluJo SINE Alu 6 301 -11 1616 143 30 0 chr12 52282586 52282851 -91503604 - AluJo SINE Alu -39 273 1 387 60 0 0 chr12 52283274 52283324 -91503131 + (CA)n Simple_repeat Simple_repeat 1 50 0 1599 130 8 4 chr12 52283500 52283754 -91502701 - AluJo SINE Alu -47 265 11 1826 97 0 41 chr12 52284068 52284337 -91502118 + AluSq SINE Alu 1 258 -55 181 83 56 0 chr12 52284340 52284376 -91502079 + GA-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr12 52284999 52285023 -91501432 + AT_rich Low_complexity Low_complexity 1 24 0 2170 114 13 0 chr12 52285027 52285335 -91501120 - AluSx SINE Alu 0 312 1 819 165 61 30 chr12 52285337 52285501 -91500954 - FRAM SINE Alu -4 172 4 1613 168 13 10 chr12 52285507 52285805 -91500650 - AluJo SINE Alu -13 299 1 2046 116 0 0 chr12 52286236 52286541 -91499914 - AluSg SINE Alu 0 305 1 354 122 0 108 chr12 52286817 52286891 -91499564 - AluSp/q SINE Alu 0 303 238 328 276 48 95 chr12 52287226 52287436 -91499019 + MIR SINE MIR 14 213 -49 773 143 23 23 chr12 52287550 52287683 -91498772 + FLAM_C SINE Alu 1 133 0 1730 156 30 3 chr12 52287719 52288021 -91498434 - AluSx SINE Alu -2 310 1 714 176 8 16 chr12 52288032 52288157 -91498298 - FLAM_C SINE Alu -17 126 3 843 270 91 4 chr12 52288531 52288761 -91497694 - MIR SINE MIR 0 262 13 360 259 86 43 chr12 52289088 52289227 -91497228 - L2 LINE L2 0 3313 3169 577 121 0 0 chr12 52289305 52289388 -91497067 + AluJb SINE Alu 200 282 -30 441 284 159 5 chr12 52289410 52289618 -91496837 - L2 LINE L2 -256 3057 2818 2224 93 6 0 chr12 52289767 52290078 -91496377 - AluSq SINE Alu 0 313 1 367 198 58 50 chr12 52290089 52290210 -91496245 - MER112 DNA MER1_type -99 161 40 925 189 0 28 chr12 52290210 52290390 -91496065 + FRAM SINE Alu 1 172 -4 777 304 129 23 chr12 52290687 52291029 -91495426 + L2 LINE L2 2927 3304 -9 192 331 7 65 chr12 52291423 52291562 -91494893 + L2 LINE L2 2756 2886 -428 604 107 8 123 chr12 52291632 52291754 -91494701 + FLAM_A SINE Alu 20 127 -15 2076 104 10 0 chr12 52291759 52292048 -91494407 + AluSx SINE Alu 1 292 -20 2074 133 0 0 chr12 52292316 52292617 -91493838 + AluSx SINE Alu 1 301 -11 466 260 55 16 chr12 52293244 52293371 -91493084 + L2 LINE L2 3141 3272 0 426 289 122 42 chr12 52293640 52293927 -91492528 + L1ME4a LINE L1 5602 5911 -210 2350 61 0 3 chr12 52294029 52294326 -91492129 - AluY SINE Alu -14 297 2 2202 92 10 0 chr12 52294404 52294707 -91491748 - AluSq SINE Alu -7 306 1 2472 20 3 3 chr12 52296356 52296653 -91489802 - AluY SINE Alu -13 298 2 200 254 0 16 chr12 52297300 52297363 -91489092 + (CGG)n Simple_repeat Simple_repeat 2 63 0 198 0 0 0 chr12 52298860 52298882 -91487573 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 186 71 0 0 chr12 52299383 52299411 -91487044 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1870 135 0 0 chr12 52299420 52299694 -91486761 - AluSx SINE Alu -38 274 1 544 146 0 62 chr12 52299695 52299791 -91486664 - AluJo/FLAM SINE Alu -186 126 37 483 18 0 0 chr12 52300522 52300578 -91485877 + (CCTG)n Simple_repeat Simple_repeat 2 57 0 2292 94 0 3 chr12 52300600 52300907 -91485548 - AluSc SINE Alu -3 306 1 2056 86 16 35 chr12 52300907 52301219 -91485236 - AluSp SINE Alu -6 307 1 6599 39 18 2 chr12 52301328 52302130 -91484325 - L1PA5 LINE L1 0 6154 5341 244 208 65 26 chr12 52303248 52303325 -91483130 - MER103 DNA DNA -19 147 68 848 139 0 8 chr12 52303455 52303584 -91482871 + FLAM_A SINE Alu 1 128 -5 207 100 0 0 chr12 52303625 52303655 -91482800 + (T)n Simple_repeat Simple_repeat 1 30 0 1996 99 27 7 chr12 52304641 52304933 -91481522 - AluSq SINE Alu -15 298 1 792 204 192 0 chr12 52304998 52305170 -91481285 + MER58A DNA MER1_type 20 224 0 725 146 18 0 chr12 52305178 52305288 -91481167 + MER3 DNA MER1_type 1 112 -97 1995 110 4 0 chr12 52305288 52305569 -91480886 + AluSx SINE Alu 1 310 0 199 71 0 0 chr12 52305569 52305597 -91480858 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1854 131 27 7 chr12 52305957 52306255 -91480200 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 52306449 52306478 -91479977 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1584 166 14 3 chr12 52306478 52306761 -91479694 - AluJo SINE Alu -22 290 5 2334 86 0 13 chr12 52307112 52307427 -91479028 - AluY SINE Alu 0 311 1 889 142 0 0 chr12 52308094 52308221 -91478234 - FLAM_A SINE Alu -6 127 1 1316 161 114 26 chr12 52308283 52308428 -91478027 - AluJo SINE Alu -15 297 166 1975 135 7 0 chr12 52308428 52308725 -91477730 - AluSx SINE Alu -13 299 1 1316 161 114 26 chr12 52308725 52308852 -91477603 - AluJo SINE Alu -146 166 1 432 354 52 10 chr12 52308966 52309199 -91477256 - L1 LINE L1 -1075 5071 4832 2332 61 0 26 chr12 52309714 52310024 -91476431 + AluY SINE Alu 10 311 0 1916 139 10 0 chr12 52310118 52310421 -91476034 + AluSx SINE Alu 1 306 -6 2377 84 0 0 chr12 52310430 52310741 -91475714 + AluY SINE Alu 1 311 0 503 237 91 40 chr12 52311203 52311282 -91475173 - MER3 DNA MER1_type -1 208 134 1664 125 26 8 chr12 52311282 52311546 -91474909 + AluSx SINE Alu 30 298 -14 503 237 91 40 chr12 52311546 52311664 -91474791 - MER3 DNA MER1_type -75 134 1 835 178 0 0 chr12 52312199 52312345 -91474110 + AluJb SINE Alu 137 282 -30 1786 131 10 24 chr12 52312574 52312865 -91473590 + AluJb SINE Alu 1 287 -25 2102 86 0 64 chr12 52313052 52313230 -91473225 - AluSx SINE Alu -18 294 143 2376 66 0 7 chr12 52313230 52313532 -91472923 - AluSc SINE Alu -9 300 1 2102 86 0 64 chr12 52313532 52313667 -91472788 - AluSx SINE Alu -169 143 1 1493 124 154 8 chr12 52313947 52314206 -91472249 + AluJo SINE Alu 1 297 -5 496 304 47 18 chr12 52314722 52314893 -91471562 - MIR3 SINE MIR -25 183 8 2402 66 0 0 chr12 52318782 52319084 -91467371 - AluY SINE Alu -9 302 1 798 128 12 105 chr12 52320811 52320983 -91465472 + MER20 DNA MER1_type 1 156 -63 2068 91 3 14 chr12 52320983 52321297 -91465158 + AluSp SINE Alu 1 311 0 242 243 10 68 chr12 52321353 52321456 -91464999 + MER102b DNA MER1_type 244 340 -1 1852 190 12 15 chr12 52321764 52322106 -91464349 + LTR8 LTR ERV1 351 691 0 3298 141 7 64 chr12 52322110 52322847 -91463608 - HUERS-P3b LTR ERV1 -4350 2644 609 2258 83 0 0 chr12 52322853 52323143 -91463312 + AluY SINE Alu 1 290 -21 9396 195 51 36 chr12 52323146 52323445 -91463010 - HUERS-P3b LTR ERV1 -4870 2126 1833 1904 138 3 0 chr12 52323445 52323736 -91462719 + AluSx SINE Alu 1 292 -20 9396 195 51 36 chr12 52323736 52325471 -91460984 - HUERS-P3b LTR ERV1 -5163 1833 57 2188 104 0 0 chr12 52325471 52325769 -91460686 + AluY SINE Alu 1 298 -13 9396 195 51 36 chr12 52325769 52325825 -91460630 - HUERS-P3b LTR ERV1 -6939 57 3 1280 133 95 9 chr12 52325825 52326035 -91460420 - MER61E LTR ERV1 0 569 342 544 242 0 33 chr12 52326035 52326155 -91460300 - AluJb SINE Alu -71 241 126 2465 203 83 10 chr12 52326161 52326208 -91460247 - L1M2c LINE L1 -4517 1834 1792 1904 151 0 3 chr12 52326208 52326500 -91459955 - AluSg SINE Alu -18 292 2 2465 203 83 10 chr12 52326500 52327177 -91459278 - L1M2c LINE L1 -4559 1792 1075 2207 70 0 0 chr12 52327209 52327481 -91458974 + LTR17 LTR ERV1 1 272 -508 3741 45 16 3 chr12 52327484 52328197 -91458258 + MER11A LTR ERVK 1 961 -305 3982 78 2 19 chr12 52328215 52328737 -91457718 + LTR17 LTR ERV1 268 780 0 71731 52 8 4 chr12 52328737 52337320 -91449135 + HERV17 LTR ERV1 2 8623 -3 6213 63 9 4 chr12 52337323 52338099 -91448356 + LTR17 LTR ERV1 1 780 0 289 344 130 16 chr12 52338106 52338336 -91448119 - L1M2c LINE L1 -5240 1041 818 246 350 77 36 chr12 52338559 52338753 -91447702 - L1M2c LINE L1 -5262 1019 818 1117 274 12 33 chr12 52338854 52339186 -91447269 - L1M2c LINE L1 -5863 418 94 1172 188 0 22 chr12 52339187 52339410 -91447045 - AluJo SINE Alu -12 300 83 385 222 0 81 chr12 52339415 52339514 -91446941 - L1M2c LINE L1 -6180 101 11 21 0 0 0 chr12 52339704 52339725 -91446730 + AT_rich Low_complexity Low_complexity 1 21 0 5855 207 70 115 chr12 52339906 52340056 -91446399 - L1M4 LINE L1 -742 5436 5281 1451 203 7 14 chr12 52340056 52340347 -91446108 - AluJo SINE Alu -21 291 3 5855 207 70 115 chr12 52340347 52340699 -91445756 - L1M4 LINE L1 -897 5281 4915 1892 132 17 0 chr12 52340699 52340995 -91445460 - AluSx SINE Alu -11 301 1 5855 207 70 115 chr12 52340995 52341646 -91444809 - L1M4 LINE L1 -1263 4915 4236 1188 159 12 80 chr12 52341646 52341897 -91444558 - MER46A DNA MER2_type -1 235 2 5855 207 70 115 chr12 52341897 52342211 -91444244 - L1M4 LINE L1 -1942 4236 3909 1966 134 0 16 chr12 52342211 52342518 -91443937 - AluSx SINE Alu -10 302 1 5855 207 70 115 chr12 52342518 52342684 -91443771 - L1M4 LINE L1 -2269 3909 3737 407 165 11 33 chr12 52342684 52342775 -91443680 - L1MB5 LINE L1 0 6174 6086 5855 207 70 115 chr12 52342775 52343113 -91443342 - L1M4 LINE L1 -2441 3737 3385 1825 138 7 7 chr12 52343113 52343402 -91443053 - AluJo SINE Alu -23 289 1 5855 207 70 115 chr12 52343402 52343688 -91442767 - L1M4 LINE L1 -2793 3385 3088 843 196 0 0 chr12 52343688 52343826 -91442629 - AluJb SINE Alu -45 267 130 5855 207 70 115 chr12 52343826 52344308 -91442147 - L1M4 LINE L1 -3090 3088 2685 492 108 0 36 chr12 52344330 52344413 -91442042 - FLAM_A SINE Alu -1 141 62 708 181 0 0 chr12 52344444 52344560 -91441895 + FLAM_C SINE Alu 2 117 -26 310 171 19 7 chr12 52344681 52344763 -91441692 - L1M LINE L1 -738 5428 5352 786 228 92 54 chr12 52344819 52345174 -91441281 - L1M4 LINE L1 -3554 2592 2219 1824 153 31 0 chr12 52345174 52345468 -91440987 - AluSx SINE Alu -4 308 6 786 228 92 54 chr12 52345468 52345503 -91440952 - L1M4 LINE L1 -3927 2219 2187 4668 163 22 7 chr12 52345531 52346359 -91440096 - L1MB3 LINE L1 -10 6173 5334 2217 77 0 3 chr12 52346479 52346766 -91439689 + AluSg SINE Alu 11 296 -14 981 99 0 0 chr12 52346997 52347128 -91439327 + AluJo/FLAM SINE Alu 1 131 -181 962 141 11 23 chr12 52347131 52347308 -91439147 - AluSg/x SINE Alu -6 304 130 666 167 0 9 chr12 52347328 52347436 -91439019 + FLAM_C SINE Alu 2 108 -35 1597 148 48 4 chr12 52347454 52347768 -91438687 + AluSx SINE Alu 2 327 0 1797 141 7 3 chr12 52348705 52349002 -91437453 - AluJo SINE Alu -3 309 12 2253 91 0 0 chr12 52349279 52349577 -91436878 - AluY SINE Alu -13 298 1 1933 249 85 27 chr12 52349611 52350126 -91436329 + MLT1H1 LTR MaLR 3 547 -8 1864 146 0 0 chr12 52350734 52351021 -91435434 - AluSx SINE Alu -11 301 15 284 328 48 40 chr12 52351046 52351171 -91435284 + L2 LINE L2 3137 3262 -10 2174 96 0 20 chr12 52351271 52351572 -91434883 - AluSq SINE Alu -18 295 1 2237 101 0 0 chr12 52351589 52351895 -91434560 - AluSg SINE Alu -4 306 1 2027 134 3 0 chr12 52352671 52352970 -91433485 - AluSx SINE Alu -12 300 1 2255 89 0 0 chr12 52352981 52353272 -91433183 - AluSg SINE Alu -19 291 1 2216 94 3 3 chr12 52353357 52353664 -91432791 - AluSp SINE Alu -6 307 1 336 195 138 69 chr12 52353715 52353875 -91432580 + L1MC5 LINE L1 7746 7920 -41 2109 90 21 0 chr12 52353875 52354163 -91432292 + AluSg SINE Alu 1 294 -16 336 195 138 69 chr12 52354163 52354176 -91432279 + L1MC5 LINE L1 7920 7931 -30 490 87 72 0 chr12 52354389 52354458 -91431997 - MADE1 DNA Mariner -5 75 2 859 211 83 28 chr12 52354486 52354704 -91431751 - MIR SINE MIR -3 259 30 597 310 69 45 chr12 52356673 52356776 -91429679 + L2 LINE L2 3013 3112 -201 206 0 69 0 chr12 52356776 52356805 -91429650 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2153 73 0 0 chr12 52356811 52357086 -91429369 - AluSx SINE Alu -37 275 1 597 310 69 45 chr12 52357086 52357265 -91429190 + L2 LINE L2 3116 3309 -4 193 268 169 42 chr12 52357399 52357541 -91428914 + MIR SINE MIR 49 208 -54 316 65 22 0 chr12 52357705 52357751 -91428704 + Alu SINE Alu 1 47 -255 2251 111 7 0 chr12 52407836 52408133 -91378322 - AluSx SINE Alu -13 299 1 2399 112 0 0 chr12 52408613 52408925 -91377530 - AluSx SINE Alu 0 312 1 764 172 8 8 chr12 52409953 52410087 -91376368 - FLAM_C SINE Alu -4 139 6 964 153 80 120 chr12 52410186 52410460 -91375995 + LTR54 LTR ERV1 1 263 -247 1897 155 17 0 chr12 52410460 52410756 -91375699 - AluJo SINE Alu -7 305 5 183 156 0 0 chr12 52410769 52410801 -91375654 + T-rich Low_complexity Low_complexity 1 32 0 1291 157 66 22 chr12 52411802 52412076 -91374379 + LTR54 LTR ERV1 225 510 0 1074 98 0 0 chr12 52412183 52412316 -91374139 + AluSc SINE Alu 1 133 -176 2585 64 0 10 chr12 52412316 52412630 -91373825 + AluY SINE Alu 1 311 0 2335 109 3 0 chr12 52414284 52414588 -91371867 - AluSx SINE Alu -7 305 1 1113 43 7 0 chr12 52414719 52414858 -91371597 + L1PA4 LINE L1 6016 6155 0 1218 296 125 27 chr12 52414872 52415600 -91370855 + L3 LINE CR1 324 1144 -433 2277 90 0 10 chr12 52415600 52415899 -91370556 + AluSg SINE Alu 1 296 -14 1218 296 125 27 chr12 52415899 52415995 -91370460 + L3 LINE CR1 1144 1229 -348 229 224 0 0 chr12 52416148 52416197 -91370258 + L1MB7 LINE L1 6018 6066 -118 1648 161 32 44 chr12 52416230 52416546 -91369909 + AluJb SINE Alu 1 312 0 2345 105 0 0 chr12 52416552 52416848 -91369607 + AluSx SINE Alu 1 296 -16 2273 109 0 3 chr12 52417067 52417361 -91369094 + AluSx SINE Alu 1 293 -19 2412 57 7 20 chr12 52417413 52417712 -91368743 + AluY SINE Alu 4 298 -13 28 0 0 0 chr12 52418160 52418188 -91368267 + AT_rich Low_complexity Low_complexity 1 28 0 588 209 153 134 chr12 52418560 52418733 -91367722 + MLT1H1 LTR MaLR 3 171 -381 2297 109 0 6 chr12 52418733 52419045 -91367410 - AluSg SINE Alu 0 310 1 588 209 153 134 chr12 52419045 52419415 -91367040 + MLT1H1 LTR MaLR 171 548 -4 1498 156 15 30 chr12 52419692 52419962 -91366493 - AluJo SINE Alu -20 292 27 1601 116 0 58 chr12 52420078 52420337 -91366118 + AluSg/x SINE Alu 68 311 -1 485 188 50 125 chr12 52420338 52420454 -91366001 - L1M4c LINE L1 -5909 475 373 2087 92 65 10 chr12 52420454 52420748 -91365707 - AluSg SINE Alu 0 310 1 485 188 50 125 chr12 52420748 52420791 -91365664 - L1M4c LINE L1 -6011 373 328 688 124 0 0 chr12 52420792 52420889 -91365566 - FLAM_C SINE Alu -17 126 30 1914 164 0 65 chr12 52420910 52421264 -91365191 - L1M4c LINE L1 -6039 345 14 2307 99 0 3 chr12 52421264 52421566 -91364889 - AluSg SINE Alu -9 301 1 1914 164 0 65 chr12 52421566 52421578 -91364877 - L1M4c LINE L1 -6370 14 3 1750 234 98 130 chr12 52421763 52422530 -91363925 + L1M4c LINE L1 32 822 -5562 2275 109 0 0 chr12 52422530 52422823 -91363632 + AluY SINE Alu 1 293 -18 1750 234 98 130 chr12 52422823 52422848 -91363607 + L1M4c LINE L1 822 846 -5538 385 92 31 0 chr12 52422848 52422913 -91363542 + Alu SINE Alu 235 301 0 1750 234 98 130 chr12 52422913 52423022 -91363433 + L1M4c LINE L1 846 957 -5427 183 42 0 0 chr12 52423022 52423046 -91363409 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1750 234 98 130 chr12 52423046 52423293 -91363162 + L1M4c LINE L1 957 1207 -5177 2156 133 0 0 chr12 52423293 52423601 -91362854 + AluSx SINE Alu 1 308 -4 1750 234 98 130 chr12 52423601 52423645 -91362810 + L1M4c LINE L1 1207 1251 -5133 947 89 32 32 chr12 52423643 52423800 -91362655 - L1MA8 LINE L1 -80 6211 6055 * 472 153 0 0 chr12 52423810 52423882 -91362573 - AluJ/FRAM SINE Alu -22 290 219 459 215 54 7 chr12 52423882 52424031 -91362424 - L1M4 LINE L1 -3128 3018 2863 814 95 0 0 chr12 52424031 52424136 -91362319 + U6 snRNA snRNA 2 106 -1 2324 138 18 0 chr12 52424147 52424755 -91361700 + AluSx SINE Alu 1 300 -12 876 144 0 8 chr12 52424769 52424901 -91361554 + FLAM_C SINE Alu 1 131 -12 2502 213 54 83 chr12 52424914 52425055 -91361400 + L1 LINE L1 3029 3173 -2973 1690 160 17 24 chr12 52425055 52425349 -91361106 + AluJo SINE Alu 4 295 -17 2502 213 54 83 chr12 52425349 52425446 -91361009 + L1 LINE L1 3173 3271 -2875 2411 94 0 0 chr12 52425446 52425744 -91360711 + AluSg SINE Alu 1 298 -12 2502 213 54 83 chr12 52425744 52426202 -91360253 + L1 LINE L1 3271 3693 -2453 898 133 0 0 chr12 52426202 52426330 -91360125 + FLAM_C SINE Alu 1 128 -5 2502 213 54 83 chr12 52426330 52426597 -91359858 + L1 LINE L1 3693 3966 -2180 1883 127 26 3 chr12 52426603 52426911 -91359544 + L1MB3 LINE L1 5861 6175 -8 1016 138 19 6 chr12 52427000 52427159 -91359296 + FRAM SINE Alu 4 164 -12 2250 98 11 3 chr12 52427162 52427449 -91359006 + AluSq SINE Alu 1 289 -24 25 31 0 0 chr12 52427449 52427481 -91358974 + AT_rich Low_complexity Low_complexity 1 32 0 273 160 0 0 chr12 52427496 52427546 -91358909 + Alu SINE Alu 252 301 -1 2342 198 38 9 chr12 52427572 52428022 -91358433 + LTR31 LTR ERV1 142 604 -15 1072 170 44 12 chr12 52428033 52428270 -91358185 - L1MB8 LINE L1 -99 6079 5838 2193 102 7 7 chr12 52428529 52428822 -91357633 - AluSx SINE Alu -19 293 1 1559 210 0 7 chr12 52428906 52429215 -91357240 + AluJo SINE Alu 1 307 -5 23 0 0 0 chr12 52429215 52429238 -91357217 + AT_rich Low_complexity Low_complexity 1 23 0 1425 183 3 39 chr12 52429241 52429526 -91356929 + AluJo SINE Alu 1 275 -37 1785 163 10 7 chr12 52429617 52429906 -91356549 - AluJo SINE Alu -17 295 6 250 235 0 0 chr12 52430115 52430166 -91356289 + MER5A DNA MER1_type 136 186 -3 2408 86 0 7 chr12 52430219 52430520 -91355935 + AluSx SINE Alu 1 299 -13 933 204 17 0 chr12 52430565 52430746 -91355709 + AluJb SINE Alu 121 304 -8 1406 138 89 37 chr12 52431342 52431611 -91354844 - AluJo SINE Alu -13 299 17 2332 72 10 3 chr12 52431688 52431980 -91354475 - AluSq SINE Alu -19 294 1 195 42 0 0 chr12 52432373 52432397 -91354058 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2299 75 0 0 chr12 52432399 52432680 -91353775 - AluSx SINE Alu -31 281 1 2840 32 0 0 chr12 52434590 52434903 -91351552 + AluSp SINE Alu 1 313 0 1669 114 18 121 chr12 52435869 52436201 -91350254 - AluSx SINE Alu -4 298 1 25 51 0 0 chr12 52436496 52436535 -91349920 + AT_rich Low_complexity Low_complexity 1 39 0 186 288 90 45 chr12 52436535 52436646 -91349809 + L2 LINE L2 3149 3264 -8 273 29 0 0 chr12 52436818 52436852 -91349603 + (CA)n Simple_repeat Simple_repeat 2 35 0 2465 70 3 0 chr12 52437280 52437580 -91348875 - AluSp SINE Alu -12 301 1 610 170 9 0 chr12 52438056 52438162 -91348293 - AluSq/x SINE Alu -205 108 2 2425 90 0 0 chr12 52438399 52438700 -91347755 + AluSx SINE Alu 1 301 -11 33 56 0 0 chr12 52438700 52438754 -91347701 + AT_rich Low_complexity Low_complexity 1 54 0 597 245 207 22 chr12 52439077 52439599 -91346856 - L2 LINE L2 0 3313 2699 329 284 0 0 chr12 52439600 52439681 -91346774 + MER94 DNA DNA 2 82 -52 2566 50 0 0 chr12 52439698 52440000 -91346455 - AluY SINE Alu -9 302 1 3972 192 96 17 chr12 52440033 52441038 -91345417 + L1MC4 LINE L1 6948 8031 -11 1088 119 114 10 chr12 52441050 52441243 -91345212 - L1MB3 LINE L1 -3 6180 5968 1838 166 10 3 chr12 52441360 52441649 -91344806 + AluJo SINE Alu 1 291 -21 3030 180 105 9 chr12 52441710 52442356 -91344099 - L1MB3 LINE L1 -42 6141 5434 592 146 241 7 chr12 52442333 52442470 -91343985 - L1MB3 LINE L1 -358 5813 5645 * 1638 142 60 39 chr12 52442470 52442675 -91343780 - MER44D DNA MER2_type -1882 609 410 2159 134 0 0 chr12 52442675 52442973 -91343482 + AluSx SINE Alu 1 298 -14 1638 142 60 39 chr12 52442973 52443098 -91343357 - MER44D DNA MER2_type -2081 410 2 3069 179 20 34 chr12 52443132 52443686 -91342769 + MLT2B3 LTR ERVL 1 546 -8 1246 181 52 8 chr12 52443688 52443936 -91342519 - L1MB3 LINE L1 -563 5620 5362 * 1647 238 11 32 chr12 52443921 52444023 -91342432 - L1MB3 LINE L1 -2348 3798 3695 2043 141 0 13 chr12 52444023 52444328 -91342127 + AluSx SINE Alu 1 301 -11 1647 238 11 32 chr12 52444328 52444381 -91342074 - L1MB3 LINE L1 -2451 3695 3642 2342 152 38 31 chr12 52444381 52444802 -91341653 - MSTB LTR MaLR -2 424 1 1647 238 11 32 chr12 52444802 52445112 -91341343 - L1MB3 LINE L1 -2504 3642 3342 730 119 28 0 chr12 52445118 52445227 -91341228 - HY1 scRNA scRNA 0 112 1 2340 106 0 19 chr12 52445259 52445570 -91340885 - AluSq SINE Alu -8 305 1 1198 218 109 8 chr12 52445575 52445841 -91340614 - AluJo SINE Alu -9 293 1 2087 119 43 13 chr12 52445924 52446227 -91340228 - AluSx SINE Alu 0 312 1 1576 163 23 53 chr12 52446259 52446560 -91339895 - AluJo SINE Alu -20 292 1 452 208 0 0 chr12 52446560 52446637 -91339818 - Tigger3(Golem) DNA MER2_type -2951 78 2 568 156 6 150 chr12 52446657 52446734 -91339721 - L1M4c LINE L1 -5778 606 564 2321 115 0 0 chr12 52446734 52447038 -91339417 - AluSx SINE Alu -8 304 1 568 156 6 150 chr12 52447038 52447127 -91339328 - L1M4c LINE L1 -5820 564 464 286 114 23 0 chr12 52447131 52447175 -91339280 + Alu SINE Alu 1 45 -256 1741 167 3 3 chr12 52447316 52447609 -91338846 - AluSx SINE Alu -19 293 1 2040 141 10 3 chr12 52447851 52448155 -91338300 + AluJb SINE Alu 1 306 -6 2187 113 7 0 chr12 52448167 52448468 -91337987 + AluSx SINE Alu 1 303 -9 322 171 207 37 chr12 52448601 52448683 -91337772 + MER5B DNA MER1_type 1 96 -82 344 311 0 0 chr12 52448956 52449046 -91337409 - L2 LINE L2 -8 3305 3216 2250 89 33 13 chr12 52449048 52449352 -91337103 + AluSg SINE Alu 1 310 0 1818 159 10 35 chr12 52449677 52449991 -91336464 + AluSx SINE Alu 1 306 -6 180 0 0 0 chr12 52450837 52450857 -91335598 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1947 139 0 48 chr12 52451164 52451480 -91334975 - AluSx SINE Alu -11 301 1 2140 82 6 66 chr12 52451644 52451961 -91334494 - AluSp SINE Alu -15 298 1 457 327 14 9 chr12 52452188 52452402 -91334053 + L2 LINE L2 2669 2883 -431 1599 176 0 24 chr12 52452411 52452701 -91333754 - AluJo SINE Alu -29 283 1 388 197 8 106 chr12 52452824 52452956 -91333499 - MIR SINE MIR -72 190 72 227 232 61 37 chr12 52452977 52453059 -91333396 - L2 LINE L2 0 3313 3230 708 198 9 0 chr12 52453301 52453417 -91333038 + FLAM_C SINE Alu 1 117 -16 183 184 0 0 chr12 52453418 52453456 -91332999 + CT-rich Low_complexity Low_complexity 2 39 0 1023 179 0 40 chr12 52453460 52453473 -91332982 - AluJo SINE Alu 0 312 300 907 127 0 8 chr12 52453473 52453607 -91332848 - AluJo/FLAM SINE Alu -169 133 1 1023 179 0 40 chr12 52453607 52453794 -91332661 - AluJo SINE Alu -12 300 120 2149 122 0 0 chr12 52453794 52454081 -91332374 + AluSx SINE Alu 1 287 -25 24 32 0 0 chr12 52454084 52454115 -91332340 + AT_rich Low_complexity Low_complexity 1 31 0 648 167 0 26 chr12 52454115 52454229 -91332226 - FLAM_A SINE Alu -7 135 25 300 286 196 53 chr12 52454280 52454602 -91331853 + L2 LINE L2 2945 3312 -1 2132 117 0 19 chr12 52454640 52454947 -91331508 + AluSx SINE Alu 1 301 -11 2323 95 7 10 chr12 52454947 52455253 -91331202 + AluSg SINE Alu 3 307 -3 1565 304 109 9 chr12 52455480 52456486 -91329969 + L2 LINE L2 1441 2547 -767 770 203 176 22 chr12 52456560 52456787 -91329668 - MIR SINE MIR 0 262 1 1104 267 61 44 chr12 52456901 52457066 -91329389 + L1ME LINE L1 4478 4639 -1507 1780 158 14 17 chr12 52457066 52457358 -91329097 - AluJo SINE Alu -21 291 1 1104 267 61 44 chr12 52457358 52457803 -91328652 + L1ME LINE L1 4639 5098 -1048 2053 151 0 13 chr12 52457806 52457940 -91328515 + AluSx SINE Alu 3 137 -175 2391 105 0 10 chr12 52457940 52458254 -91328201 + AluSx SINE Alu 1 311 -1 2053 151 0 13 chr12 52458254 52458430 -91328025 + AluSx SINE Alu 137 309 -3 1278 121 11 22 chr12 52458430 52458612 -91327843 + AluSg/x SINE Alu 126 305 -7 227 213 59 148 chr12 52458615 52458684 -91327771 + L1ME LINE L1 5088 5162 -984 1858 138 7 14 chr12 52458684 52458966 -91327489 + AluJo SINE Alu 1 280 -32 227 213 59 148 chr12 52458966 52459098 -91327357 + L1ME LINE L1 5162 5271 -875 1202 154 10 10 chr12 52459150 52459345 -91327110 + AluJo SINE Alu 107 301 -11 378 263 112 0 chr12 52459410 52459589 -91326866 + L1ME LINE L1 5327 5525 -645 249 350 72 112 chr12 52459683 52460014 -91326441 + L2 LINE L2 2949 3266 -6 2277 112 26 0 chr12 52460079 52460383 -91326072 + AluSx SINE Alu 1 312 0 6128 76 12 40 chr12 52460586 52461439 -91325016 + L1PB1 LINE L1 4916 5792 -359 2394 101 3 0 chr12 52461439 52461746 -91324709 + AluSg SINE Alu 1 308 -2 6128 76 12 40 chr12 52461746 52461762 -91324693 + L1PB1 LINE L1 5792 5807 -344 2318 125 0 0 chr12 52461762 52462074 -91324381 + AluSx SINE Alu 1 312 0 6128 76 12 40 chr12 52462074 52462458 -91323997 + L1PB1 LINE L1 5807 6149 -2 2316 97 3 0 chr12 52462621 52462930 -91323525 - AluY SINE Alu -1 310 1 1260 189 119 8 chr12 52462963 52463323 -91323132 + L1MC4 LINE L1 6948 7347 -695 1888 120 8 8 chr12 52463482 52463749 -91322706 - AluSx SINE Alu -45 267 1 22 35 0 0 chr12 52463824 52463853 -91322602 + AT_rich Low_complexity Low_complexity 1 29 0 313 227 0 13 chr12 52463862 52463937 -91322518 - L1MC5 LINE L1 -48 7913 7840 1852 131 86 21 chr12 52463948 52464239 -91322216 - AluSx SINE Alu -2 310 1 1474 220 123 72 chr12 52464289 52464678 -91321777 - L1ME2 LINE L1 0 6164 5796 2341 92 3 0 chr12 52464678 52464973 -91321482 - AluSx SINE Alu -2 310 15 1474 220 123 72 chr12 52464973 52465108 -91321347 - L1ME2 LINE L1 -368 5796 5669 2189 124 3 0 chr12 52465108 52465415 -91321040 - AluSq SINE Alu -5 308 1 1474 220 123 72 chr12 52465415 52465525 -91320930 - L1ME2 LINE L1 -495 5669 5497 1680 123 4 12 chr12 52466113 52466392 -91320063 + AluSp SINE Alu 44 320 0 2011 113 7 43 chr12 52466735 52467037 -91319418 - AluSx SINE Alu -10 302 12 346 348 14 14 chr12 52467294 52467435 -91319020 + MIR SINE MIR 17 157 -105 389 220 46 0 chr12 52467626 52467735 -91318720 + L1ME3 LINE L1 5978 6091 -71 317 298 71 0 chr12 52467741 52467825 -91318630 + L1MC4 LINE L1 6614 6703 -1339 318 272 99 0 chr12 52467835 52467916 -91318539 - L1MC4 LINE L1 -1339 6703 6615 206 227 0 30 chr12 52467920 52467986 -91318469 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 315 333 0 0 chr12 52467989 52468076 -91318379 - L1MC4 LINE L1 -1339 6703 6617 22 0 0 0 chr12 52468690 52468712 -91317743 + AT_rich Low_complexity Low_complexity 1 22 0 39 38 0 0 chr12 52469415 52469468 -91316987 + GC_rich Low_complexity Low_complexity 1 53 0 23 68 0 0 chr12 52469671 52469715 -91316740 + GC_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr12 52469762 52469796 -91316659 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 52470143 52470179 -91316276 + AT_rich Low_complexity Low_complexity 1 36 0 181 337 20 59 chr12 52470773 52470874 -91315581 - L2 LINE L2 -2 3270 3174 2004 118 0 4 chr12 52471042 52471321 -91315134 + AluSq SINE Alu 36 313 0 1422 112 0 39 chr12 52473478 52473710 -91312745 + AluSg/x SINE Alu 89 311 -1 909 156 44 31 chr12 52474012 52474172 -91312283 - AluJb SINE Alu -15 297 136 257 314 144 65 chr12 52474189 52474418 -91312037 + L2 LINE L2 3020 3266 -6 283 207 154 114 chr12 52475434 52475583 -91310872 - MIR SINE MIR -81 181 28 24 32 0 0 chr12 52476603 52476634 -91309821 + GC_rich Low_complexity Low_complexity 1 31 0 45 19 0 0 chr12 52476965 52477017 -91309438 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr12 52477192 52477224 -91309231 + AT_rich Low_complexity Low_complexity 1 32 0 2986 157 71 2 chr12 52477389 52477967 -91308488 + L1MB3 LINE L1 5492 6109 -74 2257 81 0 3 chr12 52477992 52478275 -91308180 + AluY SINE Alu 21 302 -9 328 78 0 0 chr12 52478275 52478326 -91308129 + L1MA3 LINE L1 6253 6303 -2 1579 115 0 21 chr12 52478359 52478602 -91307853 + AluSc SINE Alu 15 252 -57 1983 158 3 3 chr12 52478746 52479050 -91307405 + AluJb SINE Alu 1 304 -8 793 183 0 7 chr12 52479373 52479510 -91306945 - AluJo SINE Alu -175 137 2 1192 146 0 46 chr12 52480539 52480758 -91305697 - AluSg/x SINE Alu -19 291 83 227 301 0 0 chr12 52481671 52481744 -91304711 + HsTC2 DNA Tc2 31 103 -1795 624 250 78 81 chr12 52481889 52482301 -91304154 - MLT1H LTR MaLR 0 542 137 25 0 0 0 chr12 52483544 52483569 -91302886 + GC_rich Low_complexity Low_complexity 1 25 0 24 100 0 0 chr12 52483624 52483654 -91302801 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 52483729 52483757 -91302698 + GC_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr12 52483820 52483844 -91302611 + (A)n Simple_repeat Simple_repeat 1 24 0 30 0 0 0 chr12 52483846 52483876 -91302579 + GC_rich Low_complexity Low_complexity 1 30 0 1825 88 0 57 chr12 52484119 52484382 -91302073 - AluSx SINE Alu -11 301 54 1909 77 88 11 chr12 52484928 52485105 -91301350 - AluSc SINE Alu 0 329 167 2478 68 0 7 chr12 52485105 52485415 -91301040 - AluY SINE Alu -3 308 1 1909 77 88 11 chr12 52485415 52485546 -91300909 - AluSc SINE Alu -162 167 1 204 237 0 0 chr12 52487546 52487584 -91298871 + (CA)n Simple_repeat Simple_repeat 1 38 0 2471 84 0 0 chr12 52487834 52488130 -91298325 - AluSq SINE Alu -17 296 1 2176 105 0 0 chr12 52488285 52488562 -91297893 - AluSc SINE Alu -32 277 1 576 270 32 21 chr12 52488656 52488845 -91297610 - MER117 DNA MER1_type -5 192 2 831 136 0 38 chr12 52488928 52489060 -91297395 - FLAM_C SINE Alu -16 127 1 538 288 162 5 chr12 52489364 52489555 -91296900 + MIR SINE MIR 7 227 -35 1094 157 62 6 chr12 52489585 52489763 -91296692 - MER5A DNA MER1_type 0 189 2 908 146 0 0 chr12 52490030 52490160 -91296295 + FLAM_A SINE Alu 2 131 -2 1925 116 48 31 chr12 52490638 52490930 -91295525 + AluSx SINE Alu 1 297 -15 1634 159 107 4 chr12 52491979 52492249 -91294206 - AluJo SINE Alu -14 298 1 268 200 0 0 chr12 52492251 52492296 -91294159 - MIR SINE MIR -60 148 104 450 147 0 0 chr12 52492301 52492369 -91294086 + FRAM/FAM SINE Alu 1 65 -111 1819 80 4 0 chr12 52492370 52492596 -91293859 + AluSp SINE Alu 87 313 0 207 271 0 34 chr12 52493280 52493339 -91293116 - L3 LINE CR1 -10 1567 1511 2436 72 3 3 chr12 52493411 52493704 -91292751 - AluSp SINE Alu -20 293 1 886 151 0 0 chr12 52494000 52494139 -91292316 - FLAM_C SINE Alu 0 143 5 603 332 66 76 chr12 52494152 52494562 -91291893 - L2 LINE L2 -1 3271 2866 324 268 14 0 chr12 52494573 52494644 -91291811 + MER58B DNA MER1_type 19 90 -251 372 94 0 0 chr12 52494650 52494668 -91291787 + (TG)n Simple_repeat Simple_repeat 1 71 0 372 94 0 0 chr12 52494668 52494721 -91291734 + (TG)n Simple_repeat Simple_repeat 2 54 0 2272 81 3 49 chr12 52494721 52495029 -91291426 - AluSg SINE Alu -16 294 1 1442 140 0 9 chr12 52495048 52495262 -91291193 - AluJb SINE Alu -16 296 85 1030 189 58 42 chr12 52495264 52495410 -91291045 + MER58B DNA MER1_type 79 232 -2188 2016 155 0 16 chr12 52495410 52495720 -91290735 - AluJb SINE Alu -7 305 1 1030 189 58 42 chr12 52495720 52495832 -91290623 + MER58B DNA MER1_type 232 341 0 413 322 235 36 chr12 52495860 52496329 -91290126 - L2 LINE L2 -458 2856 2482 1964 113 64 3 chr12 52496329 52496611 -91289844 - AluSx SINE Alu -13 299 1 413 322 235 36 chr12 52496611 52497036 -91289419 - L2 LINE L2 -832 2482 2143 2080 160 0 0 chr12 52497036 52497343 -91289112 + AluJo SINE Alu 1 307 -5 413 322 235 36 chr12 52497343 52497419 -91289036 - L2 LINE L2 -1171 2143 2083 2217 107 7 3 chr12 52497419 52497717 -91288738 + AluSg SINE Alu 1 299 -11 413 322 235 36 chr12 52497717 52498009 -91288446 - L2 LINE L2 -1231 2083 1340 2522 72 0 3 chr12 52498239 52498545 -91287910 + AluY SINE Alu 1 305 -6 310 284 0 14 chr12 52498581 52498655 -91287800 - MER81 DNA DNA 0 114 42 1909 164 27 0 chr12 52499280 52499578 -91286877 + AluJo SINE Alu 1 306 -6 2242 121 3 0 chr12 52499579 52499876 -91286579 + AluSq SINE Alu 1 298 -15 1011 166 0 0 chr12 52499876 52500033 -91286422 + AluSg/x SINE Alu 134 290 -22 1980 125 29 26 chr12 52500079 52500390 -91286065 - AluSx SINE Alu 0 312 1 510 211 142 103 chr12 52500472 52500768 -91285687 - HAL1 LINE L1 -105 2402 2084 1807 157 0 33 chr12 52500768 52501067 -91285388 - AluJo SINE Alu -13 299 11 510 211 142 103 chr12 52501067 52501186 -91285269 - HAL1 LINE L1 -423 2084 1971 1478 232 128 57 chr12 52501228 52501561 -91284894 - HAL1 LINE L1 -1120 1387 1079 2245 102 13 13 chr12 52501561 52501866 -91284589 - AluSx SINE Alu -7 305 1 1478 232 128 57 chr12 52501866 52501985 -91284470 - HAL1 LINE L1 -1428 1079 970 2625 47 0 0 chr12 52501985 52502284 -91284171 - AluY SINE Alu -12 299 1 1478 232 128 57 chr12 52502284 52502579 -91283876 - HAL1 LINE L1 -1537 970 586 2199 110 20 10 chr12 52503699 52503998 -91282457 - AluSx SINE Alu -10 302 1 2042 56 15 0 chr12 52504578 52504844 -91281611 + MER1A DNA MER1_type 260 529 0 1079 87 0 0 chr12 52505056 52505194 -91281261 + AluSp/q SINE Alu 168 305 -8 2241 120 0 0 chr12 52505206 52505505 -91280950 + AluSg SINE Alu 1 299 -11 760 171 24 0 chr12 52505707 52505830 -91280625 + AluSg/x SINE Alu 175 300 -9 207 274 24 12 chr12 52505846 52505930 -91280525 + GA-rich Low_complexity Low_complexity 4 88 0 330 288 174 15 chr12 52506288 52506420 -91280035 + MIR3 SINE MIR 53 205 -3 1250 148 172 16 chr12 52506714 52506958 -91279497 + AluJb SINE Alu 1 307 0 226 0 0 0 chr12 52506958 52506983 -91279472 + (CAAA)n Simple_repeat Simple_repeat 1 144 0 1770 178 3 3 chr12 52507122 52507420 -91279035 - AluJo SINE Alu -14 298 1 242 310 70 40 chr12 52507429 52507529 -91278926 + L2 LINE L2 3158 3260 -12 2114 94 22 0 chr12 52507989 52508305 -91278150 - AluSx SINE Alu 0 322 1 782 212 53 12 chr12 52510416 52510586 -91275869 + AluJb SINE Alu 136 312 0 289 254 16 0 chr12 52510697 52510760 -91275695 + MIR SINE MIR 89 152 -56 2480 70 3 0 chr12 52511274 52511574 -91274881 + AluSp SINE Alu 1 301 -12 273 29 0 0 chr12 52512002 52512036 -91274419 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr12 52512318 52512358 -91274097 + AT_rich Low_complexity Low_complexity 1 40 0 771 138 0 0 chr12 52512654 52512763 -91273692 + AluSq/x SINE Alu 2 110 -202 1479 157 25 4 chr12 52512763 52512998 -91273457 + AluSg/x SINE Alu 72 311 -1 361 222 33 0 chr12 52513236 52513326 -91273129 - L1MC4 LINE L1 -22 8020 7928 548 306 57 44 chr12 52514115 52514363 -91272092 - MIR SINE MIR 0 262 12 2220 105 10 0 chr12 52514418 52514713 -91271742 + AluSx SINE Alu 6 303 -9 2447 84 0 0 chr12 52514956 52515265 -91271190 - AluY SINE Alu -2 309 1 2079 108 50 10 chr12 52515265 52515276 -91271179 - AluSx SINE Alu -3 309 300 207 0 0 0 chr12 52515276 52515299 -91271156 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2079 108 50 10 chr12 52515299 52515584 -91270871 - AluSx SINE Alu -12 300 1 2358 84 3 0 chr12 52515794 52516113 -91270342 + AluSp SINE Alu 1 320 0 1945 112 33 43 chr12 52516456 52516761 -91269694 - AluSx SINE Alu -10 302 1 185 225 0 0 chr12 52516761 52516801 -91269654 + L2 LINE L2 3274 3313 0 * 216 350 138 31 chr12 52516785 52517039 -91269416 - L2 LINE L2 -635 2679 2399 2491 64 0 10 chr12 52517498 52517810 -91268645 + AluY SINE Alu 1 309 -2 1806 145 7 11 chr12 52517828 52518111 -91268344 + AluJb SINE Alu 13 294 -18 2267 118 3 0 chr12 52518147 52518453 -91268002 - AluSp SINE Alu -6 307 1 721 174 0 8 chr12 52518622 52518743 -91267712 + AluSg/x SINE Alu 184 303 -9 207 274 24 12 chr12 52518759 52518843 -91267612 + GA-rich Low_complexity Low_complexity 4 88 0 330 288 174 15 chr12 52519201 52519333 -91267122 + MIR3 SINE MIR 53 205 -3 1250 148 172 16 chr12 52519627 52519896 -91266559 + AluJb SINE Alu 1 307 0 1770 178 3 3 chr12 52520035 52520333 -91266122 - AluJo SINE Alu -14 298 1 242 310 70 40 chr12 52520342 52520442 -91266013 + L2 LINE L2 3158 3260 -12 2114 94 22 0 chr12 52520902 52521218 -91265237 - AluSx SINE Alu 0 322 1 767 218 53 12 chr12 52523329 52523499 -91262956 + AluJb SINE Alu 136 312 0 187 279 33 16 chr12 52523611 52523672 -91262783 + MIR SINE MIR 91 152 -56 2480 70 3 0 chr12 52524187 52524487 -91261968 + AluSp SINE Alu 1 301 -12 273 29 0 0 chr12 52524915 52524949 -91261506 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr12 52525231 52525271 -91261184 + AT_rich Low_complexity Low_complexity 1 40 0 771 138 0 0 chr12 52525567 52525676 -91260779 + AluSq/x SINE Alu 2 110 -203 1479 157 25 4 chr12 52525676 52525911 -91260544 + AluSg/x SINE Alu 70 309 -1 361 222 33 0 chr12 52526149 52526239 -91260216 - L1MC4 LINE L1 -22 8020 7928 548 306 57 44 chr12 52527028 52527276 -91259179 - MIR SINE MIR 0 262 12 2220 105 10 0 chr12 52527331 52527626 -91258829 + AluSx SINE Alu 6 303 -9 2225 117 3 0 chr12 52527869 52528178 -91258277 - AluY SINE Alu -1 310 1 1386 150 91 56 chr12 52528180 52528197 -91258258 - AluJb SINE Alu -1 311 296 1744 90 10 53 chr12 52528197 52528248 -91258207 - L1MA1 LINE L1 -1 6301 6249 2288 89 38 0 chr12 52528248 52528539 -91257916 - AluY SINE Alu -9 302 1 1744 90 10 53 chr12 52528539 52528787 -91257668 - L1MA1 LINE L1 -53 6249 6015 1386 150 91 56 chr12 52528787 52529055 -91257400 - AluJb SINE Alu -16 296 16 2233 104 0 3 chr12 52529060 52529357 -91257098 - AluSx SINE Alu -12 300 5 2212 81 50 0 chr12 52529488 52529771 -91256684 - AluSg SINE Alu -13 297 1 1936 111 26 0 chr12 52530152 52530422 -91256033 - AluSq SINE Alu -8 305 29 2474 59 0 3 chr12 52531032 52531322 -91255133 + AluY SINE Alu 14 302 -9 2227 111 3 0 chr12 52532093 52532390 -91254065 + AluY SINE Alu 2 299 -12 921 102 47 0 chr12 52532769 52532897 -91253558 + AluSq/x SINE Alu 1 134 -178 2117 99 3 11 chr12 52532897 52533226 -91253229 + AluSc SINE Alu 1 327 0 547 93 12 12 chr12 52533603 52533689 -91252766 + AluS SINE Alu 1 86 -226 504 279 12 15 chr12 52533867 52534071 -91252384 + G-rich Low_complexity Low_complexity 1 203 0 226 249 27 70 chr12 52534282 52534401 -91252054 + L1M4 LINE L1 3004 3114 -3032 1914 158 0 7 chr12 52534401 52534686 -91251769 - AluJb SINE Alu -29 283 1 226 249 27 70 chr12 52534686 52534751 -91251704 + L1M4 LINE L1 3114 3180 -2966 1039 202 0 0 chr12 52534936 52535129 -91251326 + AluJo SINE Alu 120 312 0 2165 125 0 0 chr12 52535232 52535528 -91250927 + AluSx SINE Alu 1 296 -16 2332 87 0 3 chr12 52535530 52535829 -91250626 + AluY SINE Alu 1 298 -13 330 186 48 25 chr12 52536241 52536334 -91250121 + MLT1E LTR MaLR 82 171 -371 802 152 0 0 chr12 52536603 52536715 -91249740 + FLAM_C SINE Alu 7 118 -25 1630 163 13 59 chr12 52536743 52537050 -91249405 + AluJo SINE Alu 1 293 -19 331 188 58 0 chr12 52537071 52537140 -91249315 + MIR SINE MIR 48 120 -142 563 202 9 9 chr12 52537162 52537276 -91249179 - AluJb SINE Alu 0 312 199 372 284 18 0 chr12 52537385 52537494 -91248961 + FRAM SINE Alu 44 154 -12 890 236 87 101 chr12 52537497 52537970 -91248485 + L2 LINE L2 2690 3161 -152 2396 99 0 0 chr12 52537970 52538273 -91248182 - AluSg SINE Alu -7 303 1 890 236 87 101 chr12 52538273 52538331 -91248124 + L2 LINE L2 3161 3218 -95 1791 138 30 32 chr12 52538331 52538612 -91247843 - L1MB3 LINE L1 -1 6182 5901 1486 124 9 0 chr12 52538612 52538830 -91247625 - AluSg/x SINE Alu -8 304 85 1791 138 30 32 chr12 52538830 52538917 -91247538 - L1MB3 LINE L1 -282 5901 5815 293 272 0 0 chr12 52539490 52539571 -91246884 - AluJ/FLAM SINE Alu -220 82 2 263 244 78 136 chr12 52539666 52539804 -91246651 + L2 LINE L2 2465 2583 -731 2125 134 16 13 chr12 52539804 52540109 -91246346 + AluSx SINE Alu 1 306 -6 263 244 78 136 chr12 52540109 52540228 -91246227 + L2 LINE L2 2583 2707 -607 260 222 0 16 chr12 52540245 52540308 -91246147 - MLT1H1 LTR MaLR -163 392 331 1261 152 42 0 chr12 52540862 52541053 -91245402 + AluJo SINE Alu 96 294 -18 1251 210 16 16 chr12 52541064 52541321 -91245134 + AluJo SINE Alu 37 293 -19 1889 151 14 3 chr12 52542016 52542308 -91244147 - AluSx SINE Alu -17 295 1 2507 72 0 10 chr12 52542633 52542939 -91243516 - AluY SINE Alu -8 303 1 315 0 0 0 chr12 52544417 52544452 -91242003 + (TG)n Simple_repeat Simple_repeat 2 36 0 713 216 129 6 chr12 52544853 52545024 -91241431 + MIR SINE MIR 4 195 -67 427 328 96 36 chr12 52545553 52545888 -91240567 - L2 LINE L2 -12 3260 2906 324 0 0 0 chr12 52546212 52546248 -91240207 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 378 0 0 0 chr12 52546247 52546289 -91240166 + (TC)n Simple_repeat Simple_repeat 2 43 0 1072 178 68 32 chr12 52546290 52546582 -91239873 + MER21A LTR ERV1 24 349 -514 1892 136 0 85 chr12 52546583 52546914 -91239541 + AluSq SINE Alu 1 303 -10 376 259 53 23 chr12 52547124 52547255 -91239200 - MIR3 SINE MIR -27 181 47 250 355 103 32 chr12 52547815 52548192 -91238263 - L2 LINE L2 -6 3266 2863 803 194 239 0 chr12 52548213 52548435 -91238020 + ORSL DNA AcHobo 1 275 0 1944 142 26 10 chr12 52548863 52549166 -91237289 + AluSx SINE Alu 1 308 -4 1671 108 0 0 chr12 52549465 52549713 -91236742 + AluSg/x SINE Alu 83 330 0 290 252 10 39 chr12 52550293 52550396 -91236059 + CT-rich Low_complexity Low_complexity 3 102 0 499 319 75 40 chr12 52550862 52551185 -91235270 + L1M4 LINE L1 4232 4575 -1571 1190 166 46 145 chr12 52551185 52551510 -91234945 + AluJo SINE Alu 2 294 -8 499 319 75 40 chr12 52551510 52551612 -91234843 + L1M4 LINE L1 4575 4672 -1474 2121 123 0 20 chr12 52551746 52552048 -91234407 + AluSx SINE Alu 1 296 -16 2053 155 3 0 chr12 52552787 52553097 -91233358 - AluSx SINE Alu -1 311 1 211 143 24 0 chr12 52553215 52553257 -91233198 + (TA)n Simple_repeat Simple_repeat 1 43 0 298 303 30 0 chr12 52553360 52553459 -91232996 + MIR SINE MIR 34 135 -73 758 264 16 145 chr12 52553640 52553898 -91232557 - L3 LINE CR1 -13 1564 1387 2276 107 10 0 chr12 52553898 52554207 -91232248 + AluSx SINE Alu 1 312 0 758 264 16 145 chr12 52554207 52554395 -91232060 - L3 LINE CR1 -190 1387 1176 1740 161 23 16 chr12 52554464 52554769 -91231686 - AluJb SINE Alu -5 307 1 355 340 32 26 chr12 52556762 52556918 -91229537 - L3 LINE CR1 -48 1529 1373 1964 142 0 17 chr12 52556919 52557214 -91229241 + AluSx SINE Alu 1 290 -22 1980 125 29 26 chr12 52557260 52557571 -91228884 - AluSx SINE Alu 0 312 1 510 211 142 103 chr12 52557653 52557949 -91228506 - HAL1 LINE L1 -105 2402 2084 1807 157 0 33 chr12 52557949 52558248 -91228207 - AluJo SINE Alu -13 299 11 510 211 142 103 chr12 52558248 52558367 -91228088 - HAL1 LINE L1 -423 2084 1971 1478 232 128 57 chr12 52558409 52558742 -91227713 - HAL1 LINE L1 -1120 1387 1079 2245 102 13 13 chr12 52558742 52559047 -91227408 - AluSx SINE Alu -7 305 1 1478 232 128 57 chr12 52559047 52559166 -91227289 - HAL1 LINE L1 -1428 1079 970 2625 47 0 0 chr12 52559166 52559465 -91226990 - AluY SINE Alu -12 299 1 1478 232 128 57 chr12 52559465 52559760 -91226695 - HAL1 LINE L1 -1537 970 586 2199 110 20 10 chr12 52560881 52561180 -91225275 - AluSx SINE Alu -10 302 1 2042 56 15 0 chr12 52561760 52562026 -91224429 + MER1A DNA MER1_type 260 529 0 1079 87 0 0 chr12 52562238 52562376 -91224079 + AluSp/q SINE Alu 168 305 -8 2241 120 0 0 chr12 52562388 52562687 -91223768 + AluSg SINE Alu 1 299 -11 760 171 24 0 chr12 52562889 52563012 -91223443 + AluSg/x SINE Alu 175 300 -9 207 274 24 12 chr12 52563028 52563112 -91223343 + GA-rich Low_complexity Low_complexity 4 88 0 280 311 174 15 chr12 52563469 52563601 -91222854 + MIR3 SINE MIR 53 205 -3 1250 148 172 16 chr12 52563895 52564164 -91222291 + AluJb SINE Alu 1 307 0 1770 178 3 3 chr12 52564303 52564601 -91221854 - AluJo SINE Alu -14 298 1 242 310 70 40 chr12 52564610 52564710 -91221745 + L2 LINE L2 3158 3260 -12 2114 94 22 0 chr12 52565170 52565486 -91220969 - AluSx SINE Alu 0 322 1 782 212 53 12 chr12 52567598 52567768 -91218687 + AluJb SINE Alu 136 312 0 289 254 16 0 chr12 52567879 52567942 -91218513 + MIR SINE MIR 89 152 -56 2480 70 3 0 chr12 52568456 52568756 -91217699 + AluSp SINE Alu 1 301 -12 273 29 0 0 chr12 52569184 52569218 -91217237 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr12 52569500 52569540 -91216915 + AT_rich Low_complexity Low_complexity 1 40 0 771 138 0 0 chr12 52569836 52569945 -91216510 + AluSq/x SINE Alu 2 110 -203 1500 153 25 4 chr12 52569945 52570180 -91216275 + AluSg/x SINE Alu 72 311 -1 361 222 33 0 chr12 52570418 52570508 -91215947 - L1MC4 LINE L1 -22 8020 7928 548 306 57 44 chr12 52571297 52571545 -91214910 - MIR SINE MIR 0 262 12 2376 61 7 10 chr12 52571600 52571893 -91214562 + AluY SINE Alu 6 297 -14 1269 131 0 0 chr12 52571893 52572069 -91214386 + AluSc SINE Alu 132 307 -2 2194 125 0 0 chr12 52572919 52573214 -91213241 + AluSx SINE Alu 1 295 -17 542 132 0 0 chr12 52573259 52573335 -91213120 + AluS SINE Alu 2 77 -236 700 255 36 12 chr12 52573611 52573862 -91212593 + AluY SINE Alu 37 293 -18 1818 137 7 18 chr12 52573881 52574215 -91212240 + AluSg SINE Alu 1 331 0 587 216 49 22 chr12 52574623 52574808 -91211647 - L1MC5 LINE L1 -31 7930 7741 2602 119 14 23 chr12 52574812 52575249 -91211206 - MER65A LTR ERV1 -3 442 10 2234 129 0 0 chr12 52575279 52575589 -91210866 + AluSg SINE Alu 1 310 0 2566 43 0 46 chr12 52575758 52576083 -91210372 - AluY SINE Alu -1 310 1 1911 153 0 42 chr12 52576104 52576417 -91210038 + AluJo SINE Alu 1 300 -12 2450 92 0 0 chr12 52576761 52577064 -91209391 - AluSg SINE Alu -7 303 1 584 258 68 56 chr12 52577064 52577453 -91209002 - L1ME3 LINE L1 -214 5948 5562 267 183 30 61 chr12 52577590 52577721 -91208734 + C-rich Low_complexity Low_complexity 6 132 0 * 286 219 77 30 chr12 52577677 52577846 -91208609 + (CCCCAA)n Simple_repeat Simple_repeat 2 178 0 1886 182 48 61 chr12 52577880 52578320 -91208135 + MER21A LTR ERV1 498 931 0 2251 116 3 0 chr12 52578328 52578620 -91207835 - AluSx SINE Alu -18 294 2 184 167 0 0 chr12 52578621 52578651 -91207804 + MIR SINE MIR 115 144 -118 603 244 25 12 chr12 52578653 52578813 -91207642 + MLT1E LTR MaLR 1 162 -431 802 152 0 0 chr12 52579098 52579210 -91207245 + FLAM_C SINE Alu 7 118 -25 1983 142 0 32 chr12 52579239 52579555 -91206900 + AluJo SINE Alu 1 306 -6 227 182 23 0 chr12 52579746 52579790 -91206665 - MER57A LTR ERV1 -64 339 295 2389 81 0 3 chr12 52580036 52580334 -91206121 - AluY SINE Alu -14 297 1 2140 107 7 3 chr12 52580336 52580627 -91205828 - AluSx SINE Alu -16 296 5 292 384 48 7 chr12 52581012 52581158 -91205297 + L3 LINE CR1 227 378 -1199 245 267 139 12 chr12 52581205 52581291 -91205164 - L2 LINE L2 -9 3304 3208 799 174 34 87 chr12 52581344 52581609 -91204846 + L1MB3 LINE L1 5617 5867 -316 2328 119 0 0 chr12 52581882 52582192 -91204263 - AluSg SINE Alu 0 310 1 34 0 0 0 chr12 52582198 52582232 -91204223 + AT_rich Low_complexity Low_complexity 1 34 0 1819 94 4 0 chr12 52582247 52582481 -91203974 - AluSq SINE Alu -78 235 1 2384 86 0 6 chr12 52582488 52582801 -91203654 - AluY SINE Alu 0 311 1 315 286 223 23 chr12 52583095 52583270 -91203185 + L3 LINE CR1 1131 1340 -237 2012 145 0 16 chr12 52583270 52583573 -91202882 - AluSx SINE Alu -14 298 1 204 342 34 84 chr12 52583880 52584117 -91202338 - L2 LINE L2 -38 3234 3010 998 132 0 0 chr12 52584201 52584337 -91202118 + AluSq/x SINE Alu 1 136 -177 2098 107 31 7 chr12 52584337 52584628 -91201827 + AluSp SINE Alu 1 298 -15 950 256 125 6 chr12 52584705 52585018 -91201437 - L2 LINE L2 0 3313 2964 2592 53 0 0 chr12 52585429 52585730 -91200725 + AluY SINE Alu 1 301 -10 2275 80 13 35 chr12 52585739 52586053 -91200402 + AluSq SINE Alu 1 307 -6 1129 157 0 0 chr12 52586066 52586232 -91200223 + FAM SINE Alu 3 168 -7 1724 141 11 19 chr12 52586277 52586546 -91199909 + AluJb SINE Alu 23 289 -23 2117 133 40 0 chr12 52587469 52587769 -91198686 + AluSx SINE Alu 1 312 0 1077 153 11 27 chr12 52587894 52588077 -91198378 - FAM SINE Alu 0 49 1 231 204 41 0 chr12 52588367 52588416 -91198039 + MIR SINE MIR 96 146 -62 2104 117 183 0 chr12 52588976 52589353 -91197102 - Tigger3(Golem) DNA MER2_type 0 3029 2584 2282 114 7 3 chr12 52589363 52589670 -91196785 - AluSp SINE Alu -5 308 1 29 28 0 0 chr12 52589701 52589737 -91196718 + AT_rich Low_complexity Low_complexity 1 36 0 737 185 28 73 chr12 52589891 52590081 -91196374 - L1MC5 LINE L1 -31 7930 7733 2744 121 14 22 chr12 52590081 52590527 -91195928 - MER65A LTR ERV1 -3 442 1 737 185 28 73 chr12 52590527 52590550 -91195905 - L1MC5 LINE L1 -228 7733 7711 2501 84 0 0 chr12 52590550 52590848 -91195607 + AluSx SINE Alu 1 298 -14 737 185 28 73 chr12 52590848 52590919 -91195536 - L1MC5 LINE L1 -250 7711 7658 2035 155 7 3 chr12 52590941 52591250 -91195205 + AluJb SINE Alu 1 310 -2 480 234 44 122 chr12 52591734 52591853 -91194602 + MIR SINE MIR 2 100 -162 2308 118 0 0 chr12 52591853 52592150 -91194305 + AluSq SINE Alu 10 306 -7 480 234 44 122 chr12 52592150 52592235 -91194220 + MIR SINE MIR 100 190 -72 616 165 0 0 chr12 52592250 52592341 -91194114 + FLAM_C SINE Alu 37 127 -16 1215 127 6 137 chr12 52592500 52592814 -91193641 - ORSL DNA AcHobo -1 274 2 1587 197 30 7 chr12 52593094 52593393 -91193062 + AluJo SINE Alu 1 306 -6 2285 110 3 3 chr12 52593393 52593701 -91192754 + AluSx SINE Alu 1 308 -4 4330 146 62 39 chr12 52593740 52594564 -91191891 + L1MB3 LINE L1 5256 6059 -124 2448 47 0 0 chr12 52594564 52594840 -91191615 + AluY SINE Alu 21 296 -15 2230 171 130 65 chr12 52594840 52595501 -91190954 + MER44D DNA MER2_type 1 704 -1 4330 146 62 39 chr12 52595501 52595581 -91190874 + L1MB3 LINE L1 6058 6182 -1 1995 131 0 14 chr12 52595596 52595887 -91190568 + AluSx SINE Alu 21 307 -5 1851 171 0 7 chr12 52596239 52596538 -91189917 - AluJb SINE Alu -15 297 1 563 247 68 0 chr12 52596993 52597139 -91189316 - MIR SINE MIR -2 260 105 296 62 0 42 chr12 52597301 52597349 -91189106 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 2115 99 25 7 chr12 52597350 52597633 -91188822 - AluSx SINE Alu -24 288 1 628 192 0 25 chr12 52597633 52597753 -91188702 - AluJo/FLAM SINE Alu -179 133 17 21 36 0 0 chr12 52598669 52598697 -91187758 + GC_rich Low_complexity Low_complexity 1 28 0 236 75 0 25 chr12 52598749 52598789 -91187666 + (CCCCCG)n Simple_repeat Simple_repeat 3 41 0 409 241 125 30 chr12 52599598 52599769 -91186686 + MIR SINE MIR 13 202 -6 523 204 150 54 chr12 52599926 52600093 -91186362 + MIR SINE MIR 80 262 0 1936 111 26 0 chr12 52600407 52600677 -91185778 + AluSq SINE Alu 29 305 -8 2212 81 50 0 chr12 52601058 52601341 -91185114 + AluSg SINE Alu 1 297 -13 2233 104 0 3 chr12 52601472 52601769 -91184686 + AluSx SINE Alu 5 300 -12 1420 147 91 56 chr12 52601774 52602042 -91184413 + AluJb SINE Alu 16 296 -16 1794 83 10 53 chr12 52602042 52602290 -91184165 + L1MA1 LINE L1 6015 6249 -53 2347 82 34 0 chr12 52602290 52602582 -91183873 + AluY SINE Alu 1 302 -9 1794 83 10 53 chr12 52602582 52602633 -91183822 + L1MA1 LINE L1 6249 6301 -1 1420 147 91 56 chr12 52602633 52602650 -91183805 + AluJb SINE Alu 296 311 -1 2267 123 0 0 chr12 52602652 52602961 -91183494 + AluSc SINE Alu 1 309 0 2362 93 0 7 chr12 52602991 52603293 -91183162 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 52603299 52603320 -91183135 + AT_rich Low_complexity Low_complexity 1 21 0 2218 119 0 0 chr12 52603336 52603629 -91182826 - AluSx SINE Alu -19 293 1 2259 103 0 44 chr12 52604479 52604655 -91181800 - AluSc SINE Alu -2 307 150 2592 47 0 3 chr12 52604655 52604953 -91181502 - AluY SINE Alu -14 297 1 2259 103 0 44 chr12 52604953 52605097 -91181358 - AluSc SINE Alu -159 150 1 1537 174 14 14 chr12 52605246 52605521 -91180934 - AluJo SINE Alu -1 311 37 2364 89 0 3 chr12 52605532 52605825 -91180630 - AluSg SINE Alu -18 292 1 1439 138 14 5 chr12 52605852 52606069 -91180386 + AluSg/x SINE Alu 87 305 -7 452 242 47 0 chr12 52606223 52606351 -91180104 - L1MA10 LINE L1 0 6334 6201 2320 109 0 6 chr12 52606352 52606663 -91179792 + AluSq SINE Alu 1 309 -4 497 118 0 11 chr12 52606715 52606808 -91179647 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 1697 115 0 21 chr12 52606808 52607042 -91179413 - AluSx SINE Alu -83 229 1 29 28 0 0 chr12 52607073 52607109 -91179346 + AT_rich Low_complexity Low_complexity 1 36 0 827 183 28 70 chr12 52607263 52607452 -91179003 - L1MC5 LINE L1 -31 7930 7735 2744 121 14 22 chr12 52607452 52607898 -91178557 - MER65A LTR ERV1 -3 442 1 827 183 28 70 chr12 52607898 52607921 -91178534 - L1MC5 LINE L1 -226 7735 7713 2352 84 0 0 chr12 52607921 52608219 -91178236 + AluSx SINE Alu 1 298 -14 827 183 28 70 chr12 52608219 52608290 -91178165 - L1MC5 LINE L1 -248 7713 7658 1818 160 0 3 chr12 52608312 52608600 -91177855 + AluJo SINE Alu 1 287 -25 586 144 55 6 chr12 52608657 52608895 -91177560 + AluJo SINE Alu 5 299 -13 1592 185 41 0 chr12 52608944 52609236 -91177219 + AluJb SINE Alu 1 304 -8 388 286 33 103 chr12 52609271 52609484 -91176971 - L1ME4a LINE L1 -113 6008 5811 1060 213 104 27 chr12 52609495 52609919 -91176536 - L1MC5 LINE L1 -297 7664 7246 725 142 83 17 chr12 52610318 52610438 -91176017 + FLAM_C SINE Alu 2 129 -4 521 242 57 0 chr12 52610522 52610646 -91175809 - L2 LINE L2 -4 3268 3138 811 136 0 0 chr12 52610722 52610840 -91175615 - FLAM_C SINE Alu -10 133 16 1051 83 0 0 chr12 52611024 52611156 -91175299 - AluSq/x SINE Alu -180 132 1 285 240 413 0 chr12 52611670 52611791 -91174664 - MIR3 SINE MIR -5 203 33 222 204 0 0 chr12 52611822 52611866 -91174589 + L3b LINE CR1 1173 1216 -367 2149 100 0 7 chr12 52612268 52612567 -91173888 - AluSq SINE Alu -16 297 1 2152 107 0 0 chr12 52612692 52612990 -91173465 - AluSg SINE Alu -12 298 1 299 284 69 26 chr12 52613229 52613345 -91173110 + L2 LINE L2 1855 1975 -1339 1862 140 3 0 chr12 52613363 52613648 -91172807 - AluSx SINE Alu -26 286 1 2267 81 0 10 chr12 52613863 52614170 -91172285 + AluY SINE Alu 7 310 -1 2175 119 0 0 chr12 52614339 52614649 -91171806 - AluSg SINE Alu 0 310 1 34 0 0 0 chr12 52614655 52614689 -91171766 + AT_rich Low_complexity Low_complexity 1 34 0 1709 94 4 0 chr12 52614704 52614938 -91171517 - AluSq SINE Alu -78 235 1 2234 86 0 6 chr12 52614945 52615258 -91171197 - AluY SINE Alu 0 311 1 501 315 222 24 chr12 52615552 52615727 -91170728 + L3 LINE CR1 1131 1270 -307 1897 142 0 16 chr12 52615727 52616030 -91170425 - AluSx SINE Alu -14 298 1 501 315 222 24 chr12 52616030 52616187 -91170268 + L3 LINE CR1 1270 1529 -48 1590 161 23 16 chr12 52618183 52618488 -91167967 + AluJb SINE Alu 1 307 -5 783 264 16 145 chr12 52618557 52618745 -91167710 + L3 LINE CR1 1176 1274 -303 2129 107 10 0 chr12 52618745 52619054 -91167401 - AluSx SINE Alu 0 312 1 783 264 16 145 chr12 52619054 52619312 -91167143 + L3 LINE CR1 1274 1564 -13 288 303 30 0 chr12 52619493 52619592 -91166863 - MIR SINE MIR -73 135 34 211 143 24 0 chr12 52619695 52619737 -91166718 + (TA)n Simple_repeat Simple_repeat 1 43 0 1907 151 3 0 chr12 52619855 52620160 -91166295 + AluSx SINE Alu 1 306 -6 1973 123 0 20 chr12 52620904 52621206 -91165249 - AluSx SINE Alu -16 296 1 40 37 0 0 chr12 52621388 52621442 -91165013 + AT_rich Low_complexity Low_complexity 1 54 0 1665 125 72 18 chr12 52621442 52621592 -91164863 - AluSx SINE Alu -18 294 154 2220 97 3 3 chr12 52621592 52621901 -91164554 - AluSc SINE Alu 0 309 1 1665 125 72 18 chr12 52621901 52622029 -91164426 - AluSx SINE Alu -158 154 1 2082 111 3 0 chr12 52622408 52622705 -91163750 - AluY SINE Alu -12 299 2 223 387 97 41 chr12 52623097 52623366 -91163089 + L3b LINE CR1 1297 1580 -3 2332 59 0 3 chr12 52623475 52623765 -91162690 - AluY SINE Alu -9 302 14 450 0 0 0 chr12 52624361 52624411 -91162044 + (TA)n Simple_repeat Simple_repeat 2 51 0 2345 39 0 48 chr12 52624411 52624722 -91161733 - AluY SINE Alu -15 296 1 1760 146 0 40 chr12 52624754 52625056 -91161399 + AluJo SINE Alu 11 300 -12 2302 92 0 0 chr12 52625399 52625702 -91160753 - AluSg SINE Alu -7 303 1 1198 286 51 42 chr12 52625702 52626349 -91160106 - L1ME3 LINE L1 -214 5948 5296 2410 62 0 10 chr12 52626378 52626687 -91159768 + AluY SINE Alu 2 307 -4 2580 200 138 5 chr12 52626788 52627348 -91159107 + MER82 DNA MER2_type 2 635 -18 235 247 34 11 chr12 52627362 52627451 -91159004 - L1ME4a LINE L1 -85 6036 5946 660 168 9 0 chr12 52628435 52628542 -91157913 - AluJ SINE Alu -19 293 186 826 147 0 0 chr12 52628545 52628661 -91157794 - AluJ SINE Alu -185 117 2 1957 80 0 67 chr12 52628809 52629031 -91157424 - AluSg SINE Alu 0 311 76 216 0 0 0 chr12 52629031 52629055 -91157400 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2225 71 0 0 chr12 52629055 52629337 -91157118 - AluY SINE Alu -29 282 1 1957 80 0 67 chr12 52629337 52629444 -91157011 - AluSg SINE Alu -233 78 1 1852 117 12 52 chr12 52629560 52629884 -91156571 + AluSx SINE Alu 1 311 -1 193 50 25 50 chr12 52629897 52629937 -91156518 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 557 202 79 9 chr12 52630281 52630395 -91156060 + AluJb SINE Alu 170 291 -21 1818 155 0 3 chr12 52630483 52630786 -91155669 - AluJb SINE Alu -10 302 1 329 307 60 33 chr12 52630814 52630964 -91155491 + L3 LINE CR1 1262 1415 -162 259 272 101 83 chr12 52630999 52631071 -91155384 + L3 LINE CR1 1393 1462 -115 2193 84 3 10 chr12 52631071 52631367 -91155088 + AluSc SINE Alu 1 294 -15 259 272 101 83 chr12 52631367 52631463 -91154992 + L3 LINE CR1 1462 1564 -13 * 947 256 125 6 chr12 52631444 52631757 -91154698 - L2 LINE L2 0 3313 2964 2510 47 0 0 chr12 52632168 52632469 -91153986 + AluY SINE Alu 1 301 -10 2279 82 0 25 chr12 52632478 52632793 -91153662 + AluSq SINE Alu 1 307 -6 1097 167 0 0 chr12 52632804 52632972 -91153483 + FAM SINE Alu 1 168 -7 1636 142 11 11 chr12 52633017 52633284 -91153171 + AluJb SINE Alu 23 289 -23 1967 133 40 0 chr12 52634207 52634507 -91151948 + AluSx SINE Alu 1 312 0 984 153 11 27 chr12 52634632 52634815 -91151640 - FAM SINE Alu 0 49 1 268 282 71 0 chr12 52635105 52635190 -91151265 + MIR3 SINE MIR 96 186 -22 3792 141 132 123 chr12 52635713 52636100 -91150355 - Tigger3b DNA MER2_type -1797 1231 849 2301 85 7 0 chr12 52636100 52636406 -91150049 - AluSp SINE Alu -5 308 1 3792 141 132 123 chr12 52636406 52636835 -91149620 - Tigger3b DNA MER2_type -2179 849 425 2154 73 0 54 chr12 52636835 52637152 -91149303 - AluSg SINE Alu -10 300 1 3792 141 132 123 chr12 52637152 52637223 -91149232 - Tigger3b DNA MER2_type -2603 425 356 1806 139 0 28 chr12 52637223 52637510 -91148945 + AluSx SINE Alu 9 287 -25 3792 141 132 123 chr12 52637510 52637837 -91148618 - Tigger3b DNA MER2_type -2672 356 4 1554 160 71 0 chr12 52638084 52638365 -91148090 + AluJo SINE Alu 1 301 -11 2060 95 10 7 chr12 52639448 52639742 -91146713 + AluSp SINE Alu 1 295 -18 454 167 0 62 chr12 52639791 52639887 -91146568 + FLAM SINE Alu 38 127 -16 1636 186 10 3 chr12 52639895 52640202 -91146253 + AluJb SINE Alu 1 309 -3 2083 102 38 0 chr12 52640202 52640495 -91145960 + AluSg SINE Alu 1 304 -6 303 244 0 93 chr12 52640653 52640739 -91145716 - L2 LINE L2 -1 3271 3194 1883 89 44 0 chr12 52640847 52641145 -91145310 - AluSx SINE Alu 0 310 1 22 88 0 0 chr12 52641675 52641732 -91144723 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr12 52641769 52641790 -91144665 + GC_rich Low_complexity Low_complexity 1 21 0 1930 96 37 4 chr12 52642073 52642373 -91144082 + AluY SINE Alu 1 309 0 303 244 0 93 chr12 52642481 52642567 -91143888 + L2 LINE L2 3194 3271 -1 2028 105 37 3 chr12 52642725 52643019 -91143436 - AluSg SINE Alu -6 304 1 226 239 128 37 chr12 52643048 52643157 -91143298 + L3 LINE CR1 1165 1283 -294 21 36 0 0 chr12 52643350 52643378 -91143077 + AT_rich Low_complexity Low_complexity 1 28 0 244 242 33 22 chr12 52643488 52643579 -91142876 + L1MC4a LINE L1 5858 5949 -1859 770 145 0 8 chr12 52643581 52643698 -91142757 + FLAM_C SINE Alu 2 117 -26 1555 152 72 0 chr12 52643825 52644101 -91142354 + AluJo SINE Alu 6 301 -11 2060 95 10 7 chr12 52645184 52645478 -91140977 + AluSp SINE Alu 1 295 -18 454 167 0 62 chr12 52645527 52645623 -91140832 + FLAM SINE Alu 38 127 -16 1261 229 27 10 chr12 52645631 52645928 -91140527 + AluJb SINE Alu 1 302 0 1756 149 28 0 chr12 52645933 52646215 -91140240 + AluJb SINE Alu 1 290 -22 1815 127 0 50 chr12 52646226 52646548 -91139907 + AluSx SINE Alu 1 306 -6 304 238 63 63 chr12 52646801 52646857 -91139598 + L1ME2 LINE L1 5981 6036 -128 2053 104 34 0 chr12 52646857 52647154 -91139301 - AluSx SINE Alu -5 307 1 304 238 63 63 chr12 52647154 52647223 -91139232 + L1ME2 LINE L1 6035 6106 -58 1008 72 20 13 chr12 52647347 52647499 -91138956 + AluSp/q SINE Alu 161 313 0 209 271 0 34 chr12 52648183 52648242 -91138213 - L3 LINE CR1 -10 1567 1511 2291 72 3 3 chr12 52648314 52648607 -91137848 - AluSp SINE Alu -20 293 1 814 151 0 0 chr12 52648903 52649042 -91137413 - FLAM_C SINE Alu 0 143 5 594 332 66 76 chr12 52649055 52649465 -91136990 - L2 LINE L2 -1 3271 2866 349 268 14 0 chr12 52649476 52649547 -91136908 + MER58B DNA MER1_type 19 90 -251 372 94 0 0 chr12 52649553 52649571 -91136884 + (TG)n Simple_repeat Simple_repeat 1 71 0 372 94 0 0 chr12 52649571 52649624 -91136831 + (TG)n Simple_repeat Simple_repeat 2 54 0 2130 81 3 49 chr12 52649624 52649932 -91136523 - AluSg SINE Alu -16 294 1 1336 140 0 9 chr12 52649951 52650165 -91136290 - AluJb SINE Alu -16 296 85 1079 193 58 42 chr12 52650167 52650313 -91136142 + MER58B DNA MER1_type 79 232 -2188 1861 155 0 16 chr12 52650313 52650623 -91135832 - AluJb SINE Alu -7 305 1 1079 193 58 42 chr12 52650623 52650735 -91135720 + MER58B DNA MER1_type 232 341 0 402 322 235 36 chr12 52650763 52651232 -91135223 - L2 LINE L2 -458 2856 2482 1792 113 64 7 chr12 52651232 52651515 -91134940 - AluSx SINE Alu -13 299 1 402 322 235 36 chr12 52651515 52651940 -91134515 - L2 LINE L2 -832 2482 2143 1926 160 0 0 chr12 52651940 52652247 -91134208 + AluJo SINE Alu 1 307 -5 402 322 235 36 chr12 52652247 52652323 -91134132 - L2 LINE L2 -1171 2143 2083 2075 107 7 3 chr12 52652323 52652621 -91133834 + AluSg SINE Alu 1 299 -11 402 322 235 36 chr12 52652621 52652913 -91133542 - L2 LINE L2 -1231 2083 1340 2379 61 0 3 chr12 52653143 52653439 -91133016 + AluY SINE Alu 1 295 -16 332 284 0 14 chr12 52653485 52653559 -91132896 - MER81 DNA DNA 0 114 42 1732 168 27 0 chr12 52654184 52654482 -91131973 + AluJo SINE Alu 1 306 -6 1831 142 0 27 chr12 52654483 52654778 -91131677 + AluSx SINE Alu 1 287 -25 1618 148 23 59 chr12 52654802 52655105 -91131350 - Tigger3(Golem) DNA MER2_type -2734 295 4 1554 160 71 0 chr12 52655352 52655633 -91130822 + AluJo SINE Alu 1 301 -11 2060 95 10 7 chr12 52656716 52657010 -91129445 + AluSp SINE Alu 1 295 -18 454 167 0 62 chr12 52657059 52657155 -91129300 + FLAM SINE Alu 38 127 -16 1636 186 10 3 chr12 52657163 52657470 -91128985 + AluJb SINE Alu 1 309 -3 2083 102 38 0 chr12 52657470 52657763 -91128692 + AluSg SINE Alu 1 304 -6 311 244 0 93 chr12 52657921 52658007 -91128448 - L2 LINE L2 -1 3271 3194 199 71 0 0 chr12 52658115 52658143 -91128312 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 1954 81 41 0 chr12 52658143 52658414 -91128041 - AluSx SINE Alu -1 309 1 626 121 32 16 chr12 52658609 52658733 -91127722 - AluY SINE Alu -131 180 55 1146 118 5 56 chr12 52658735 52658930 -91127525 - AluSc SINE Alu -124 185 1 1241 193 14 14 chr12 52659079 52659354 -91127101 - AluJo SINE Alu -1 311 37 2196 92 0 3 chr12 52659365 52659658 -91126797 - AluSg SINE Alu -18 292 1 1270 153 18 5 chr12 52659685 52659908 -91126547 + AluSg/x SINE Alu 87 312 0 475 234 47 0 chr12 52660048 52660176 -91126279 - L1MA10 LINE L1 0 6334 6201 1611 119 41 0 chr12 52660177 52660421 -91126034 + AluSp SINE Alu 1 254 -59 224 317 0 0 chr12 52660602 52660662 -91125793 + C-rich Low_complexity Low_complexity 2 61 0 2046 113 10 0 chr12 52661140 52661442 -91125013 - AluSp SINE Alu 0 313 9 1616 186 68 0 chr12 52663803 52664126 -91122329 + MER7A DNA MER2_type 1 343 -3 223 294 16 71 chr12 52665285 52665411 -91121044 - MIR SINE MIR -78 184 66 241 250 17 17 chr12 52667052 52667112 -91119343 + L2 LINE L2 3209 3268 -4 316 322 0 0 chr12 52667899 52667989 -91118466 + G-rich Low_complexity Low_complexity 1 90 0 316 336 20 27 chr12 52668034 52668183 -91118272 + GA-rich Low_complexity Low_complexity 2 149 0 1966 115 97 47 chr12 52668378 52668809 -91117646 + pTR5 LTR ERV1 82 714 0 189 74 0 0 chr12 52670086 52670113 -91116342 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1547 121 0 0 chr12 52670809 52671033 -91115422 - AluSg SINE Alu -86 224 1 1687 128 7 17 chr12 52671091 52671380 -91115075 - L1MB3 LINE L1 -1 6182 5897 1553 91 5 0 chr12 52671381 52671591 -91114864 - AluSg/x SINE Alu -17 293 83 24 32 0 0 chr12 52671654 52671685 -91114770 + GC_rich Low_complexity Low_complexity 1 31 0 454 292 0 0 chr12 52671733 52671904 -91114551 + C-rich Low_complexity Low_complexity 1 171 0 223 225 36 27 chr12 52671979 52672090 -91114365 + (CACAC)n Simple_repeat Simple_repeat 1 112 0 212 156 67 0 chr12 52672305 52672350 -91114105 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1814 138 13 43 chr12 52672441 52672746 -91113709 + AluSx SINE Alu 3 298 -14 29 0 0 0 chr12 52674745 52674774 -91111681 + AT_rich Low_complexity Low_complexity 1 29 0 2041 127 13 0 chr12 52674816 52675115 -91111340 - AluSx SINE Alu -9 303 1 239 227 187 0 chr12 52675547 52675622 -91110833 - MIR SINE MIR -99 163 75 2020 222 24 13 chr12 52676184 52676644 -91109811 - MLT1C LTR MaLR 0 467 3 34 93 0 0 chr12 52677034 52677131 -91109324 + AT_rich Low_complexity Low_complexity 1 97 0 682 213 7 0 chr12 52677142 52677283 -91109172 - L1MD1 LINE L1 -22 6220 6079 316 135 10 106 chr12 52677405 52677441 -91109014 + MLT1E1 LTR MaLR 559 597 -57 2103 101 0 0 chr12 52677441 52677750 -91108705 + AluSc SINE Alu 1 309 0 316 135 10 106 chr12 52677750 52677814 -91108641 + MLT1E1 LTR MaLR 597 652 -2 892 195 97 0 chr12 52677865 52678050 -91108405 + MER3 DNA MER1_type 1 203 -6 2051 123 0 7 chr12 52678757 52679057 -91107398 + AluSx SINE Alu 1 298 -14 2131 85 31 0 chr12 52679195 52679488 -91106967 + AluSx SINE Alu 1 302 -10 467 189 95 0 chr12 52679521 52679616 -91106839 + MIR SINE MIR 66 169 -93 183 204 122 20 chr12 52680676 52680725 -91105730 - MIR3 SINE MIR -2 206 153 301 222 252 52 chr12 52680835 52680970 -91105485 - MIR3 SINE MIR -9 199 38 306 293 0 0 chr12 52681113 52681195 -91105260 + L2 LINE L2 3190 3271 -1 636 260 123 27 chr12 52681285 52681504 -91104951 + MIR SINE MIR 5 244 -18 3243 35 20 0 chr12 52682695 52683089 -91103366 - MER11C LTR ERVK -669 402 1 287 162 120 77 chr12 52683090 52683207 -91103248 + L1MC4 LINE L1 7914 8035 -7 1250 196 45 0 chr12 52683529 52683774 -91102681 + Charlie4 DNA MER1_type 1 256 -1705 199 245 137 10 chr12 52683806 52683908 -91102547 + L2 LINE L2 3195 3309 -4 201 103 51 0 chr12 52683959 52683998 -91102457 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1965 107 43 3 chr12 52684211 52684511 -91101944 + AluSx SINE Alu 1 312 0 941 237 121 39 chr12 52684751 52685214 -91101241 - MLT1H LTR MaLR -2 547 1 819 270 166 22 chr12 52685376 52685780 -91100675 + L3 LINE CR1 1116 1577 0 2116 107 0 0 chr12 52686208 52686499 -91099956 + AluSx SINE Alu 1 291 -21 2098 122 3 3 chr12 52686607 52686919 -91099536 - AluSp SINE Alu -1 312 1 705 200 222 11 chr12 52686924 52687104 -91099351 - MIR SINE MIR -20 242 25 577 272 18 24 chr12 52687122 52687291 -91099164 - MIR SINE MIR -2 260 93 2090 89 31 0 chr12 52687291 52687584 -91098871 + AluSx SINE Alu 1 302 -10 467 189 95 0 chr12 52687617 52687712 -91098743 + MIR SINE MIR 66 169 -93 183 204 122 20 chr12 52688772 52688821 -91097634 - MIR3 SINE MIR -2 206 153 301 222 252 52 chr12 52688931 52689066 -91097389 - MIR3 SINE MIR -9 199 38 306 293 0 0 chr12 52689209 52689291 -91097164 + L2 LINE L2 3190 3271 -1 636 260 123 27 chr12 52689381 52689600 -91096855 + MIR SINE MIR 5 244 -18 554 313 78 0 chr12 52690553 52690719 -91095736 - L3 LINE CR1 -137 1440 1262 600 227 115 21 chr12 52691971 52692164 -91094291 + MIR SINE MIR 4 213 -49 315 0 0 0 chr12 52692165 52692200 -91094255 + (CA)n Simple_repeat Simple_repeat 1 35 0 677 246 34 23 chr12 52692921 52693096 -91093359 - MIR SINE MIR -54 208 32 427 291 47 8 chr12 52693828 52693955 -91092500 - MER5B DNA MER1_type -9 169 38 975 264 102 44 chr12 52694072 52694532 -91091923 + MLT1L LTR MaLR 3 419 -92 323 256 26 0 chr12 52694538 52694616 -91091839 - MIR SINE MIR -15 247 168 2297 77 0 26 chr12 52697444 52697755 -91088700 + AluSc SINE Alu 1 303 -6 237 196 0 0 chr12 52698508 52698564 -91087891 + (CA)n Simple_repeat Simple_repeat 2 57 0 2169 100 3 0 chr12 52699508 52699797 -91086658 + AluSx SINE Alu 1 290 -22 2272 73 10 7 chr12 52700752 52701053 -91085402 - AluY SINE Alu -9 302 1 396 271 34 8 chr12 52702881 52702999 -91083456 - L3b LINE CR1 -182 1401 1281 267 313 170 14 chr12 52704077 52704240 -91082215 - MIR SINE MIR -62 146 10 1759 166 10 0 chr12 52704464 52704772 -91081683 + AluJb SINE Alu 1 311 -1 198 279 0 0 chr12 52705694 52705737 -91080718 - MIR SINE MIR -6 256 214 335 291 110 8 chr12 52705804 52705931 -91080524 - MIR SINE MIR -75 187 48 512 314 71 23 chr12 52706619 52706845 -91079610 + MIR SINE MIR 17 249 -13 276 245 0 0 chr12 52706870 52706919 -91079536 + L2 LINE L2 3204 3252 -20 910 213 92 7 chr12 52707366 52707638 -91078817 + L1MC5 LINE L1 7299 7593 -368 2161 87 44 0 chr12 52707687 52707985 -91078470 + AluY SINE Alu 1 311 0 228 233 50 0 chr12 52707987 52708047 -91078408 + L1 LINE L1 4419 4481 -1665 2540 40 0 13 chr12 52708056 52708360 -91078095 + AluY SINE Alu 1 300 -11 906 117 0 0 chr12 52708360 52708480 -91077975 + AluSc SINE Alu 132 251 -58 667 171 16 0 chr12 52708480 52708603 -91077852 - L1P4 LINE L1 -655 5510 5386 467 37 0 0 chr12 52708605 52708662 -91077793 + AluY SINE Alu 239 293 -19 2114 131 3 3 chr12 52708662 52708967 -91077488 + AluSx SINE Alu 1 305 -7 575 261 0 12 chr12 52709041 52709206 -91077249 - L1 LINE L1 -1653 4493 4331 5493 120 17 0 chr12 52709212 52710023 -91076432 + L1PA16 LINE L1 5324 6148 -18 2173 63 6 57 chr12 52710069 52710189 -91076266 + AluY SINE Alu 1 126 -185 1108 39 0 0 chr12 52710189 52710317 -91076138 + L1PA4 LINE L1 6026 6153 -2 2173 63 6 57 chr12 52710317 52710512 -91075943 + AluY SINE Alu 126 300 -11 1195 236 70 30 chr12 52710972 52711539 -91074916 + L2 LINE L2 2316 3138 -175 306 0 0 0 chr12 52711539 52711573 -91074882 + (TG)n Simple_repeat Simple_repeat 2 35 0 1195 236 70 30 chr12 52711573 52711733 -91074722 + L2 LINE L2 3138 3290 -23 279 202 19 96 chr12 52711733 52711837 -91074618 - L1ME4a LINE L1 -59 6062 5967 2266 106 3 0 chr12 52711997 52712298 -91074157 - AluSx SINE Alu -10 302 1 287 254 68 17 chr12 52712313 52712431 -91074024 - L1ME4a LINE L1 -588 5533 5410 22 0 0 0 chr12 52712431 52712453 -91074002 + AT_rich Low_complexity Low_complexity 1 22 0 257 255 92 20 chr12 52712482 52712635 -91073820 - L1ME4a LINE L1 -2390 5418 5255 1550 170 16 79 chr12 52712834 52713151 -91073304 - AluJb SINE Alu -15 297 1 232 277 133 0 chr12 52714033 52714116 -91072339 - MIR SINE MIR -2 260 167 389 229 0 0 chr12 52714424 52714494 -91071961 - MIR SINE MIR -63 145 76 3054 104 101 58 chr12 52714853 52715115 -91071340 + L1MB3 LINE L1 5593 5842 -341 2394 98 0 19 chr12 52715115 52715433 -91071022 + AluSq SINE Alu 1 312 -1 3054 104 101 58 chr12 52715433 52715736 -91070719 + L1MB3 LINE L1 5842 6182 -1 355 371 75 0 chr12 52716040 52716199 -91070256 - MIR SINE MIR -91 171 1 201 74 0 0 chr12 52716468 52716495 -91069960 + (A)n Simple_repeat Simple_repeat 1 27 0 351 78 0 0 chr12 52717468 52717519 -91068936 + (CA)n Simple_repeat Simple_repeat 1 51 0 2539 43 0 10 chr12 52717928 52718227 -91068228 + L1PA8 LINE L1 5877 6172 0 395 317 71 31 chr12 52718797 52719021 -91067434 + L2 LINE L2 1700 1932 -1382 342 0 0 0 chr12 52719118 52719156 -91067299 + (TG)n Simple_repeat Simple_repeat 2 39 0 1812 262 143 33 chr12 52719316 52720312 -91066143 + L2 LINE L2 1866 3037 -276 2444 68 0 26 chr12 52720312 52720623 -91065832 - AluY SINE Alu -8 303 1 1812 262 143 33 chr12 52720623 52720934 -91065521 + L2 LINE L2 3037 3312 -1 664 118 90 69 chr12 52722608 52722752 -91063703 + LTR45B LTR ERV1 343 489 0 287 149 0 43 chr12 52723777 52723824 -91062631 - Alu SINE Alu -258 45 1 24 0 0 0 chr12 52724429 52724453 -91062002 + AT_rich Low_complexity Low_complexity 1 24 0 2149 120 16 3 chr12 52724468 52724777 -91061678 + AluSp SINE Alu 1 313 0 2246 108 3 10 chr12 52725166 52725472 -91060983 - AluSx SINE Alu -7 305 2 266 65 0 22 chr12 52727608 52727654 -91058801 + (TTTTTG)n Simple_repeat Simple_repeat 1 45 0 189 74 0 0 chr12 52727943 52727970 -91058485 + (CAGAC)n Simple_repeat Simple_repeat 5 31 0 258 245 0 0 chr12 52728050 52728103 -91058352 - L3 LINE CR1 -852 725 673 529 279 93 27 chr12 52728105 52728235 -91058220 + L3 LINE CR1 727 847 -730 3802 124 12 5 chr12 52728235 52728798 -91057657 + L1MC1 LINE L1 5767 6333 0 529 279 93 27 chr12 52728798 52728925 -91057530 + L3 LINE CR1 847 1001 -576 522 274 73 0 chr12 52728977 52729101 -91057354 + L2 LINE L2 3180 3312 -1 220 235 147 0 chr12 52729834 52729902 -91056553 - L3b LINE CR1 -199 1384 1307 201 39 0 0 chr12 52730811 52730837 -91055618 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 450 273 38 0 chr12 52732306 52732438 -91054017 - L2 LINE L2 0 3272 3136 2304 76 0 3 chr12 52732695 52732984 -91053471 - AluY SINE Alu -23 288 1 313 317 30 48 chr12 52732995 52733162 -91053293 - L2 LINE L2 -527 2787 2624 833 237 103 39 chr12 52733343 52733809 -91052646 + L1MC5 LINE L1 7523 8042 0 351 65 0 0 chr12 52734475 52734521 -91051934 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr12 52734712 52734733 -91051722 + AT_rich Low_complexity Low_complexity 1 21 0 243 382 96 13 chr12 52734920 52735077 -91051378 + L3b LINE CR1 1355 1524 -59 556 286 69 111 chr12 52736243 52736603 -91049852 - L2 LINE L2 -32 3240 2896 360 0 0 0 chr12 52737054 52737094 -91049361 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 269 125 91 chr12 52737163 52737371 -91049084 + MIR SINE MIR 28 242 -20 2394 99 0 0 chr12 52737592 52737894 -91048561 - AluSx SINE Alu -10 302 1 310 279 0 0 chr12 52739123 52739191 -91047264 + L2 LINE L2 3244 3311 -2 871 172 17 69 chr12 52739875 52740049 -91046406 - FRAM SINE Alu -20 156 1 1767 169 10 7 chr12 52740394 52740695 -91045760 - AluSx SINE Alu -10 302 1 364 311 0 94 chr12 52740753 52740933 -91045522 - MIR SINE MIR -66 196 34 321 279 186 8 chr12 52741024 52741153 -91045302 - L2 LINE L2 -530 2784 2633 710 277 34 29 chr12 52742143 52742399 -91044056 - MIR SINE MIR -3 259 6 360 336 23 8 chr12 52743211 52743342 -91043113 - MIR SINE MIR -122 140 8 673 272 47 5 chr12 52743579 52743770 -91042685 + MIR SINE MIR 2 200 -62 182 287 177 46 chr12 52744099 52744336 -91042119 + L2 LINE L2 2485 2752 -562 1748 272 66 6 chr12 52745282 52745964 -91040491 + L2 LINE L2 2425 3144 -169 3007 41 0 0 chr12 52746670 52747011 -91039444 + L1PA5 LINE L1 5812 6152 -2 228 135 0 0 chr12 52747268 52747305 -91039150 + (A)n Simple_repeat Simple_repeat 1 37 0 195 129 0 0 chr12 52747366 52747397 -91039058 + (T)n Simple_repeat Simple_repeat 1 31 0 1148 181 34 58 chr12 52748048 52748072 -91038383 - MER33 DNA MER1_type -2267 318 295 2134 119 3 3 chr12 52748072 52748367 -91038088 + AluSx SINE Alu 1 295 -17 1148 181 34 58 chr12 52748367 52748667 -91037788 - MER33 DNA MER1_type -2290 295 2 186 71 0 0 chr12 52748771 52748799 -91037656 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1662 157 0 39 chr12 52748805 52749091 -91037364 - AluJb SINE Alu -37 275 1 464 230 122 14 chr12 52749672 52749811 -91036644 - MIR3 SINE MIR -17 191 38 1910 82 113 0 chr12 52750526 52750782 -91035673 + AluSc SINE Alu 14 298 -11 267 288 50 0 chr12 52750983 52751063 -91035392 + L2 LINE L2 3107 3190 -82 234 108 0 0 chr12 52751063 52751100 -91035355 - Alu SINE Alu 0 320 284 8338 54 1 0 chr12 52751100 52752065 -91034390 + LTR5 LTR ERVK 1 966 -3 1819 156 0 0 chr12 52752068 52752337 -91034118 - AluJb SINE Alu -40 272 4 204 292 15 15 chr12 52752352 52752417 -91034038 + L2 LINE L2 3203 3267 -5 315 210 34 92 chr12 52752443 52752562 -91033893 - MIR SINE MIR -71 191 80 226 247 65 0 chr12 52753097 52753174 -91033281 + HAL1b LINE L1 1256 1337 -11 24 53 0 0 chr12 52754904 52754942 -91031513 + AT_rich Low_complexity Low_complexity 1 38 0 1115 88 0 132 chr12 52754946 52755151 -91031304 + AluY SINE Alu 1 178 -133 634 280 58 40 chr12 52755859 52756084 -91030371 + MIR SINE MIR 2 230 -32 1561 198 42 0 chr12 52756308 52756596 -91029859 - AluJo SINE Alu -12 300 1 1660 184 48 3 chr12 52756906 52757199 -91029256 - AluJo SINE Alu -6 306 1 242 313 34 62 chr12 52757900 52758076 -91028379 + L2 LINE L2 2336 2506 -808 2422 76 0 10 chr12 52758336 52758640 -91027815 + AluY SINE Alu 1 301 -10 1663 171 0 57 chr12 52758963 52759262 -91027193 + AluJo SINE Alu 1 282 -30 393 149 0 0 chr12 52759263 52759330 -91027125 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 558 292 138 17 chr12 52760314 52760735 -91025720 - L2 LINE L2 -38 3275 2804 1680 177 14 0 chr12 52760783 52761080 -91025375 + AluJo SINE Alu 1 301 0 181 189 0 0 chr12 52761621 52761658 -91024797 + L2 LINE L2 3234 3270 -2 1041 162 12 0 chr12 52762963 52763136 -91023319 + FRAM SINE Alu 1 173 -3 21 0 0 0 chr12 52763163 52763184 -91023271 + AT_rich Low_complexity Low_complexity 1 21 0 426 277 39 8 chr12 52764127 52764257 -91022198 + MIR SINE MIR 121 254 -8 435 224 45 69 chr12 52765223 52765412 -91021043 - MIR SINE MIR -44 218 36 416 268 6 54 chr12 52765651 52765819 -91020636 - MIR SINE MIR -56 206 47 722 198 8 0 chr12 52765854 52765980 -91020475 - FRAM SINE Alu -48 128 2 370 266 131 78 chr12 52766767 52766895 -91019560 + L2 LINE L2 3011 3131 -141 2295 108 3 0 chr12 52766895 52767192 -91019263 + AluSx SINE Alu 1 298 -14 370 266 131 78 chr12 52767192 52767307 -91019148 + L2 LINE L2 3131 3267 -5 6494 95 25 14 chr12 52767307 52768258 -91018197 + L1MA5A LINE L1 5336 6297 0 2499 144 41 5 chr12 52768525 52768936 -91017519 - MSTB LTR MaLR 0 426 1 1395 240 81 89 chr12 52769191 52769332 -91017123 + L1MC5 LINE L1 5839 5980 -1913 2284 98 0 0 chr12 52769332 52769609 -91016846 + AluSx SINE Alu 9 285 -27 1395 240 81 89 chr12 52769609 52770590 -91015865 + L1MC5 LINE L1 5980 6999 -894 186 43 0 0 chr12 52770610 52770633 -91015822 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 870 92 0 0 chr12 52770666 52770775 -91015680 - FLAM_C SINE Alu -34 109 1 1402 211 103 44 chr12 52770791 52771227 -91015228 + L1MC5 LINE L1 6963 7424 -537 296 340 68 0 chr12 52771237 52771340 -91015115 + L2 LINE L2 3160 3269 -3 22 56 0 0 chr12 52771393 52771429 -91015026 + AT_rich Low_complexity Low_complexity 1 36 0 598 221 101 82 chr12 52771805 52772076 -91014379 + L1MC5 LINE L1 7540 7821 -140 1752 178 3 31 chr12 52772076 52772397 -91014058 + AluJo SINE Alu 1 312 0 598 221 101 82 chr12 52772397 52772492 -91013963 + L1MC5 LINE L1 7821 7913 -48 2219 119 0 0 chr12 52773265 52773567 -91012888 - AluSc SINE Alu -7 302 1 2557 52 0 10 chr12 52773577 52773883 -91012572 - AluY SINE Alu -8 303 1 212 211 0 58 chr12 52773939 52773991 -91012464 - MIR SINE MIR -52 210 162 2117 189 25 59 chr12 52774598 52775121 -91011334 + MLT1D LTR MaLR 1 505 0 242 162 103 29 chr12 52775669 52775737 -91010718 - L2 LINE L2 0 3313 3241 1860 152 3 20 chr12 52776202 52776504 -91009951 + AluJo SINE Alu 1 297 -15 185 314 12 23 chr12 52776542 52776628 -91009827 + L2 LINE L2 2580 2664 -650 193 333 0 0 chr12 52776633 52776693 -91009762 - L2 LINE L2 -14 3299 3240 643 269 19 50 chr12 52776694 52776799 -91009656 + MIR SINE MIR 1 108 -154 2432 92 0 6 chr12 52776799 52777113 -91009342 + AluSq SINE Alu 2 313 0 643 269 19 50 chr12 52777113 52777267 -91009188 + MIR SINE MIR 108 252 -10 347 251 279 24 chr12 52777628 52777915 -91008540 - L2 LINE L2 -23 3290 2931 2571 71 0 0 chr12 52778503 52778814 -91007641 + AluY SINE Alu 1 311 0 467 255 95 65 chr12 52778896 52779408 -91007047 + L2 LINE L2 2725 3253 -60 524 253 19 53 chr12 52779838 52780061 -91006394 - MIR SINE MIR -50 212 1 2383 87 0 6 chr12 52781678 52781989 -91004466 - AluSq SINE Alu -4 309 1 259 303 63 67 chr12 52782359 52782659 -91003796 + L2 LINE L2 2998 3296 -17 1549 177 50 17 chr12 52783081 52783381 -91003074 + AluJb SINE Alu 1 310 -2 329 265 182 0 chr12 52783499 52783631 -91002824 - MIR SINE MIR -51 211 56 384 322 74 7 chr12 52783639 52783788 -91002667 - L2 LINE L2 0 3272 3114 183 80 0 0 chr12 52784697 52784722 -91001733 + (CA)n Simple_repeat Simple_repeat 2 26 0 513 260 61 46 chr12 52784752 52784948 -91001507 - MIR SINE MIR -58 204 6 181 275 130 0 chr12 52786529 52786598 -90999857 - MIR SINE MIR -78 130 53 21 0 0 0 chr12 52786973 52786994 -90999461 + AT_rich Low_complexity Low_complexity 1 21 0 514 309 146 0 chr12 52787374 52787675 -90998780 - L3 LINE CR1 -23 1554 1210 1057 110 0 0 chr12 52787789 52787925 -90998530 + AluSq/x SINE Alu 1 136 -176 2468 80 0 0 chr12 52787925 52788227 -90998228 + AluSg SINE Alu 1 302 -8 1399 152 21 109 chr12 52788229 52788559 -90997896 + AluJo SINE Alu 1 301 -11 530 217 18 109 chr12 52788572 52788619 -90997836 + L1MC4 LINE L1 7765 7815 -227 1459 170 94 8 chr12 52788619 52788884 -90997571 - AluJo SINE Alu -10 302 15 530 217 18 109 chr12 52788884 52789057 -90997398 + L1MC4 LINE L1 7815 7965 -77 1942 157 0 0 chr12 52789076 52789380 -90997075 - AluSx SINE Alu 0 304 1 180 0 0 0 chr12 52789508 52789528 -90996927 + (A)n Simple_repeat Simple_repeat 1 20 0 838 248 15 0 chr12 52789817 52790019 -90996436 - L1PA16 LINE L1 -10 6156 5952 7334 160 18 42 chr12 52790222 52790514 -90995941 + L1MA4 LINE L1 3374 3671 -2629 522 83 0 48 chr12 52790514 52790598 -90995857 + MADE1 DNA Mariner 1 80 0 7334 160 18 42 chr12 52790598 52791031 -90995424 + L1MA4 LINE L1 3671 4113 -2187 604 236 0 0 chr12 52791031 52791137 -90995318 - AluJ SINE Alu -23 289 184 933 143 0 8 chr12 52791138 52791271 -90995184 - AluJ SINE Alu -180 132 1 7334 160 18 42 chr12 52791271 52793438 -90993017 + L1MA4 LINE L1 4112 6288 -12 298 263 126 23 chr12 52793489 52793664 -90992791 + L1M4 LINE L1 2635 2827 -3319 1671 152 89 0 chr12 52793665 52793934 -90992521 - AluJo SINE Alu -17 295 3 225 234 27 85 chr12 52794029 52794151 -90992304 + L1M4 LINE L1 3004 3113 -3033 1892 156 0 7 chr12 52794151 52794433 -90992022 - AluJb SINE Alu -32 280 1 225 234 27 85 chr12 52794433 52794498 -90991957 + L1M4 LINE L1 3113 3180 -2966 180 0 0 0 chr12 52794673 52794693 -90991762 + (A)n Simple_repeat Simple_repeat 1 20 0 1099 171 0 0 chr12 52794700 52794876 -90991579 + FRAM SINE Alu 1 40 0 2352 87 0 10 chr12 52794979 52795278 -90991177 + AluSq SINE Alu 1 296 -17 2668 147 79 29 chr12 52795453 52795971 -90990484 + LTR38 LTR ERV1 1 544 -12 1069 160 0 23 chr12 52796028 52796203 -90990252 + FAM SINE Alu 4 174 -1 1052 164 6 0 chr12 52796547 52796706 -90989749 + AluJb SINE Alu 134 293 -19 2077 124 0 23 chr12 52797202 52797509 -90988946 + AluSx SINE Alu 1 300 -12 2049 159 84 25 chr12 52797513 52797952 -90988503 + MLT1C LTR MaLR 3 467 0 1157 177 98 93 chr12 52798121 52798170 -90988285 + MLT1A1 LTR MaLR 2 49 -316 1678 173 10 42 chr12 52798170 52798476 -90987979 + AluJo SINE Alu 1 296 -16 1157 177 98 93 chr12 52798476 52798777 -90987678 + MLT1A1 LTR MaLR 49 365 0 254 289 92 55 chr12 52799093 52799366 -90987089 + L2 LINE L2 2939 3221 -51 201 339 0 0 chr12 52799592 52799657 -90986798 + (CTG)n Simple_repeat Simple_repeat 1 65 0 374 167 14 14 chr12 52799959 52800031 -90986424 + L1ME LINE L1 5589 5660 -461 965 137 0 0 chr12 52800046 52800185 -90986270 + FLAM_C SINE Alu 4 142 -1 246 203 29 14 chr12 52800804 52800873 -90985582 - MLT1K LTR MaLR -2 586 517 180 206 14 27 chr12 52800874 52800947 -90985508 + GA-rich Low_complexity Low_complexity 2 73 0 867 270 77 95 chr12 52800957 52801398 -90985057 - MLT1K LTR MaLR -91 497 65 214 356 14 27 chr12 52801803 52801876 -90984579 + MER91A DNA MER1_type 82 153 -43 325 280 197 21 chr12 52802576 52802769 -90983686 - MIR SINE MIR -17 245 19 253 163 20 20 chr12 52802898 52802947 -90983508 - MLT1L LTR MaLR -423 192 144 2175 128 0 0 chr12 52803003 52803299 -90983156 - AluSq SINE Alu -17 296 1 1425 164 0 17 chr12 52803671 52803903 -90982552 + AluJb SINE Alu 1 228 -84 3191 147 45 102 chr12 52803908 52804791 -90981664 + LTR1 LTR ERV1 1 826 0 400 123 0 0 chr12 52804791 52804848 -90981607 + AluJb SINE Alu 230 286 -26 258 136 0 0 chr12 52804848 52804892 -90981563 + (TA)n Simple_repeat Simple_repeat 1 44 0 231 235 71 0 chr12 52804892 52804977 -90981478 + L1MC4 LINE L1 6613 6703 -1339 315 0 0 0 chr12 52804977 52805012 -90981443 + (TA)n Simple_repeat Simple_repeat 1 35 0 2196 120 3 3 chr12 52805738 52806037 -90980418 - AluSc SINE Alu -10 299 1 185 242 167 0 chr12 52806061 52806127 -90980328 - MIR SINE MIR -115 93 17 2316 107 3 0 chr12 52806690 52807000 -90979455 + AluSx SINE Alu 1 311 -1 523 155 0 0 chr12 52807665 52807749 -90978706 + AluJ/FLAM SINE Alu 1 84 -228 1247 109 0 57 chr12 52807749 52807942 -90978513 - AluJo SINE Alu -118 194 13 348 151 58 12 chr12 52807949 52808035 -90978420 - MER104 DNA Tc2 -86 94 5 426 247 62 39 chr12 52808037 52808215 -90978240 + L1ME4a LINE L1 5938 6119 -2 322 130 0 0 chr12 52808311 52808357 -90978098 - MER96B DNA MER1_type? -182 235 190 2638 63 0 0 chr12 52808511 52808813 -90977642 + AluSg SINE Alu 1 302 -8 1169 174 4 13 chr12 52808994 52809043 -90977412 + MER96B DNA MER1_type? 190 238 -179 943 112 0 22 chr12 52809043 52809177 -90977278 - FLAM_C SINE Alu -1 132 2 1169 174 4 13 chr12 52809177 52809357 -90977098 + MER96B DNA MER1_type? 238 417 0 409 267 159 11 chr12 52809552 52809728 -90976727 - MIR SINE MIR -2 260 59 254 264 132 11 chr12 52809863 52809954 -90976501 - MIR SINE MIR -53 209 108 1602 177 16 50 chr12 52810686 52810890 -90975565 - AluJo SINE Alu -6 306 115 1181 120 30 15 chr12 52810890 52811090 -90975365 - L1PA15 LINE L1 -6 6159 5957 1602 177 16 50 chr12 52811090 52811202 -90975253 - AluJo SINE Alu -197 115 1 1593 163 102 0 chr12 52812344 52812760 -90973695 + AluJb SINE Alu 1 445 0 190 259 0 35 chr12 52812956 52813014 -90973441 + MIR SINE MIR 24 79 -129 690 174 32 68 chr12 52813020 52813139 -90973316 - MER5A DNA MER1_type -4 185 74 2586 58 3 3 chr12 52813139 52813447 -90973008 - AluSg SINE Alu -2 308 1 690 174 32 68 chr12 52813447 52813517 -90972938 - MER5A DNA MER1_type -115 74 3 208 146 0 24 chr12 52814249 52814290 -90972165 + (TCC)n Simple_repeat Simple_repeat 2 41 0 2427 108 0 3 chr12 52815275 52815589 -90970866 + AluSq SINE Alu 1 313 0 681 261 0 23 chr12 52816236 52816412 -90970043 + MIR SINE MIR 1 172 -90 302 239 104 0 chr12 52818205 52818272 -90968183 - L2 LINE L2 -10 3303 3230 2270 104 0 7 chr12 52818339 52818636 -90967819 + AluSx SINE Alu 1 295 -17 324 278 111 8 chr12 52819446 52819572 -90966883 + MIR3 SINE MIR 17 155 -53 1134 153 0 12 chr12 52819733 52819903 -90966552 + AluJb SINE Alu 132 299 -13 271 227 30 0 chr12 52820147 52820213 -90966242 + MER112 DNA MER1_type 1 68 -192 1972 166 3 3 chr12 52820450 52820757 -90965698 + AluJo SINE Alu 1 307 -5 1108 181 0 0 chr12 52820834 52821016 -90965439 - AluJo SINE Alu -10 302 121 2158 139 0 0 chr12 52821027 52821329 -90965126 - AluSx SINE Alu -10 302 1 233 247 155 10 chr12 52822649 52822746 -90963709 - L1MC4a LINE L1 -1621 6187 6077 503 294 90 80 chr12 52823166 52823567 -90962888 + L2 LINE L2 2868 3272 0 843 221 21 7 chr12 52823924 52824127 -90962328 - MIR SINE MIR 0 262 58 325 250 25 67 chr12 52824112 52824232 -90962223 - MIR SINE MIR -1 261 147 * 1691 170 7 4 chr12 52824482 52824759 -90961696 - AluJo SINE Alu -11 301 24 1684 114 0 13 chr12 52824921 52825149 -90961306 - AluSg/x SINE Alu -6 304 80 828 290 59 48 chr12 52825205 52825660 -90960795 - L1ME3A LINE L1 -211 5951 5492 254 312 58 36 chr12 52825687 52825825 -90960630 - MIR3 SINE MIR -54 154 14 2087 137 0 7 chr12 52827282 52827574 -90958881 + AluSx SINE Alu 1 290 -22 299 233 116 0 chr12 52828966 52829052 -90957403 - L2 LINE L2 -8 3264 3169 2512 83 3 0 chr12 52829085 52829387 -90957068 - AluSp SINE Alu -10 303 1 483 228 39 16 chr12 52829448 52829575 -90956880 + MIR SINE MIR 20 149 -113 1702 197 7 3 chr12 52830129 52830423 -90956032 - AluJb SINE Alu -16 296 2 636 154 0 9 chr12 52830548 52830658 -90955797 - FLAM_C SINE Alu -26 117 9 261 269 130 23 chr12 52830667 52830883 -90955572 - L1MC4a LINE L1 -1859 5949 5711 285 290 243 23 chr12 52831089 52831227 -90955228 - L3 LINE CR1 -294 1283 1177 2461 86 0 3 chr12 52831227 52831529 -90954926 + AluSg SINE Alu 1 301 -9 1808 115 91 18 chr12 52831533 52831658 -90954797 + AluSg SINE Alu 1 115 -195 2372 63 0 3 chr12 52831658 52831942 -90954513 + AluY SINE Alu 23 305 -6 2515 49 0 7 chr12 52831944 52832263 -90954192 + AluY SINE Alu 1 317 0 1808 115 91 18 chr12 52832263 52832419 -90954036 + AluSg SINE Alu 115 307 -3 285 290 243 23 chr12 52832419 52832534 -90953921 - L3 LINE CR1 -402 1175 968 343 228 31 83 chr12 52832536 52832620 -90953835 - L1ME4a LINE L1 -2 6119 6032 1962 153 0 3 chr12 52832620 52832915 -90953540 + AluJo SINE Alu 14 307 -5 343 228 31 83 chr12 52832915 52833023 -90953432 - L1ME4a LINE L1 -89 6032 5937 319 294 144 17 chr12 52833024 52833204 -90953251 - L3 LINE CR1 -686 891 689 888 170 0 0 chr12 52833208 52833343 -90953112 + AluJo SINE Alu 1 135 -177 1285 196 65 18 chr12 52833482 52833757 -90952698 - AluJb SINE Alu -24 288 1 213 365 214 6 chr12 52833838 52833997 -90952458 - L3 LINE CR1 -922 655 464 2257 100 6 38 chr12 52834003 52834322 -90952133 - AluSq SINE Alu -4 309 1 1604 162 20 56 chr12 52834449 52834752 -90951703 - AluJo SINE Alu -18 294 3 1514 133 3 83 chr12 52834777 52835101 -90951354 + AluSx SINE Alu 1 298 -14 1314 232 107 36 chr12 52835324 52835819 -90950636 + L2 LINE L2 1390 1919 -1395 340 158 122 0 chr12 52835840 52835922 -90950533 + L2 LINE L2 2123 2214 -1100 2364 57 7 0 chr12 52835994 52836318 -90950137 - AluSp SINE Alu 0 326 1 891 142 0 22 chr12 52836320 52836454 -90950001 - AluJo/FLAM SINE Alu -181 131 1 2300 125 3 0 chr12 52836687 52836992 -90949463 + AluSx SINE Alu 1 306 -6 251 230 0 68 chr12 52837037 52837111 -90949344 + L2 LINE L2 2639 2707 -607 315 244 6 26 chr12 52837128 52837296 -90949159 - MLT1H LTR MaLR -163 392 229 333 217 250 0 chr12 52837311 52837403 -90949052 + MER5A DNA MER1_type 75 189 0 836 251 74 98 chr12 52837404 52837421 -90949034 + L2 LINE L2 2699 2715 -598 2000 149 0 13 chr12 52837421 52837737 -90948718 + AluJb SINE Alu 1 312 0 836 251 74 98 chr12 52837737 52838188 -90948267 + L2 LINE L2 2715 3160 -153 2406 99 0 0 chr12 52838188 52838491 -90947964 - AluSg SINE Alu -7 303 1 836 251 74 98 chr12 52838491 52838549 -90947906 + L2 LINE L2 3160 3218 -95 2738 129 22 60 chr12 52838549 52838830 -90947625 - L1MB3 LINE L1 -1 6182 5933 1688 109 0 0 chr12 52838830 52839050 -90947405 - AluSg/x SINE Alu -8 304 85 2738 129 22 60 chr12 52839050 52839356 -90947099 - L1MB3 LINE L1 -250 5933 5617 300 244 133 11 chr12 52839409 52839499 -90946956 + L2 LINE L2 3208 3308 -5 272 423 53 0 chr12 52839506 52839714 -90946741 - L3 LINE CR1 -1164 413 195 601 83 0 0 chr12 52840071 52840155 -90946300 + AluS SINE Alu 5 88 -224 1132 141 5 22 chr12 52840444 52840628 -90945827 + AluSg/x SINE Alu 123 303 -9 2343 101 3 0 chr12 52840629 52840925 -90945530 + AluSx SINE Alu 1 297 -15 266 305 155 23 chr12 52841095 52841269 -90945186 - L2 LINE L2 -206 3066 2870 1305 138 5 0 chr12 52841310 52841499 -90944956 + AluJo SINE Alu 1 190 -122 1371 166 14 0 chr12 52842101 52842324 -90944131 + AluJo SINE Alu 82 307 -5 1881 191 0 0 chr12 52842326 52842629 -90943826 + AluJo SINE Alu 1 303 -9 2007 124 22 19 chr12 52842928 52843251 -90943204 - THE1C LTR MaLR -51 324 1 2684 98 5 15 chr12 52843251 52843651 -90942804 - THE1C-int LTR MaLR 0 1580 1185 1981 152 7 3 chr12 52843981 52844277 -90942178 + AluJb SINE Alu 5 301 -11 312 289 80 90 chr12 52844970 52845103 -90941352 - L2 LINE L2 -345 2969 2836 2144 102 7 3 chr12 52845103 52845431 -90941024 + AluSq SINE Alu 1 329 0 312 289 80 90 chr12 52845431 52845497 -90940958 - L2 LINE L2 -478 2836 2771 403 226 49 0 chr12 52845507 52845609 -90940846 - L1MB2 LINE L1 -10 6161 6055 526 150 212 18 chr12 52845609 52845722 -90940733 - FLAM_C SINE Alu -7 136 2 2722 125 51 17 chr12 52845732 52845946 -90940509 - L1MB3 LINE L1 -129 6054 5849 1968 101 83 0 chr12 52845946 52846223 -90940232 - AluSp SINE Alu -13 300 1 2722 125 51 17 chr12 52846223 52846480 -90939975 - L1MB3 LINE L1 -334 5849 5567 458 278 68 44 chr12 52846526 52846864 -90939591 - L2 LINE L2 -588 2726 2298 183 304 18 18 chr12 52847528 52847584 -90938871 + L2 LINE L2 3255 3310 -3 2276 123 0 3 chr12 52847780 52848090 -90938365 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr12 52848334 52848357 -90938098 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 52848442 52848470 -90937985 + AT_rich Low_complexity Low_complexity 1 28 0 316 224 116 82 chr12 52848518 52848665 -90937790 + MIR SINE MIR 40 191 -71 2111 134 3 13 chr12 52849030 52849200 -90937255 - AluSx SINE Alu -8 304 137 2317 99 23 0 chr12 52849200 52849504 -90936951 - AluSp SINE Alu -2 311 1 2111 134 3 13 chr12 52849504 52849640 -90936815 - AluSx SINE Alu -175 137 1 190 279 29 77 chr12 52849724 52849828 -90936627 + L2 LINE L2 3010 3108 -164 2177 137 0 0 chr12 52850268 52850567 -90935888 + AluSx SINE Alu 1 299 -13 277 238 0 89 chr12 52851582 52851683 -90934772 + MIR SINE MIR 117 208 -54 353 301 153 20 chr12 52852445 52852641 -90933814 - MIR SINE MIR -31 231 10 262 229 0 0 chr12 52852652 52852713 -90933742 - MIR SINE MIR -15 247 187 803 228 35 5 chr12 52852907 52853104 -90933351 - MER58C DNA MER1_type -12 203 1 698 181 0 36 chr12 52853484 52853622 -90932833 + FLAM_A SINE Alu 1 133 0 191 336 106 9 chr12 52855303 52855416 -90931039 + L2 LINE L2 3149 3272 0 195 364 13 0 chr12 52856402 52856479 -90929976 + MIR SINE MIR 185 262 0 2414 94 0 0 chr12 52857885 52858184 -90928271 + AluSx SINE Alu 1 299 -13 850 183 80 0 chr12 52858557 52858732 -90927723 - MER5A DNA MER1_type 0 189 1 196 254 102 0 chr12 52859230 52859289 -90927166 - L2 LINE L2 -86 3186 3122 1727 161 6 19 chr12 52859827 52860138 -90926317 + AluJo SINE Alu 6 312 0 961 102 0 8 chr12 52860145 52860272 -90926183 + FLAM_C SINE Alu 1 126 -7 334 200 13 40 chr12 52860273 52860348 -90926107 - L1MCa LINE L1 -4351 2075 2003 2081 121 3 0 chr12 52860719 52861024 -90925431 + AluSg SINE Alu 1 306 -4 387 345 48 35 chr12 52861287 52861516 -90924939 - MIR SINE MIR -29 233 2 1539 165 19 56 chr12 52862423 52862744 -90923711 + AluJb SINE Alu 1 309 -3 2112 128 0 0 chr12 52862816 52863121 -90923334 + AluSq SINE Alu 1 305 -8 406 314 32 39 chr12 52863223 52863413 -90923042 - MIR SINE MIR -63 145 9 2204 109 0 0 chr12 52863514 52863817 -90922638 + AluSq SINE Alu 1 303 -10 375 259 53 23 chr12 52864027 52864158 -90922297 - MIR3 SINE MIR -27 181 47 225 353 109 37 chr12 52864718 52865095 -90921360 - L2 LINE L2 -6 3266 2863 794 194 239 0 chr12 52865116 52865338 -90921117 + ORSL DNA AcHobo 1 275 0 1852 139 27 3 chr12 52865766 52866067 -90920388 + AluSx SINE Alu 1 308 -4 1440 112 0 0 chr12 52866366 52866563 -90919892 + AluSg/x SINE Alu 83 279 -31 798 172 0 0 chr12 52866646 52866774 -90919681 + AluJb SINE Alu 169 296 -16 280 262 32 71 chr12 52866774 52866900 -90919555 - L1MC/D LINE L1 -2000 5808 5688 1577 185 31 0 chr12 52866904 52867215 -90919240 - AluJb SINE Alu 0 312 1 1436 120 5 0 chr12 52867300 52867508 -90918947 + AluJb SINE Alu 1 209 -103 196 254 102 0 chr12 52868039 52868098 -90918357 - L2 LINE L2 -86 3186 3122 1727 161 6 19 chr12 52868636 52868947 -90917508 + AluJo SINE Alu 6 312 0 961 102 0 8 chr12 52868954 52869081 -90917374 + FLAM_C SINE Alu 1 126 -7 334 200 13 40 chr12 52869082 52869157 -90917298 - L1MCa LINE L1 -4351 2075 2003 2081 121 3 0 chr12 52869528 52869833 -90916622 + AluSg SINE Alu 1 306 -4 387 345 48 35 chr12 52870096 52870325 -90916130 - MIR SINE MIR -29 233 2 1539 165 19 56 chr12 52871232 52871553 -90914902 + AluJb SINE Alu 1 309 -3 2112 128 0 0 chr12 52871625 52871930 -90914525 + AluSq SINE Alu 1 305 -8 406 314 32 39 chr12 52872032 52872222 -90914233 - MIR SINE MIR -63 145 9 2113 97 7 7 chr12 52872323 52872621 -90913834 + AluSx SINE Alu 1 298 -14 266 141 28 0 chr12 52872621 52872692 -90913763 - L1MC5 LINE L1 -231 7730 7658 1818 160 0 3 chr12 52872714 52873002 -90913453 + AluJo SINE Alu 1 287 -25 586 144 55 6 chr12 52873059 52873297 -90913158 + AluJo SINE Alu 5 299 -13 1375 216 42 0 chr12 52873346 52873633 -90912822 + AluJb SINE Alu 1 299 -13 12295 14 0 0 chr12 52873837 52876005 -90910450 + L1HS LINE L1 3985 6153 -2 19183 28 2 0 chr12 52876021 52879057 -90907398 + L1PA3 LINE L1 3122 6161 0 1500 249 69 81 chr12 52879057 52879882 -90906573 + L1ME3A LINE L1 5354 6168 -2 1946 94 73 0 chr12 52880082 52880368 -90906087 + AluSg SINE Alu 1 307 -3 406 301 27 20 chr12 52880509 52880655 -90905800 - MLT1J2 LTR MaLR -1 449 303 2094 128 0 0 chr12 52880742 52881046 -90905409 - AluSc SINE Alu -5 304 1 627 283 0 6 chr12 52881066 52881243 -90905212 - L1MC4a LINE L1 -1871 5937 5762 319 212 0 30 chr12 52881256 52881322 -90905133 + L2 LINE L2 3246 3309 -4 1945 119 14 3 chr12 52881418 52881711 -90904744 - AluSq SINE Alu -17 296 1 676 259 176 9 chr12 52881762 52881978 -90904477 + MIR SINE MIR 11 262 0 417 327 91 5 chr12 52882344 52882543 -90903912 - MIR SINE MIR -16 246 31 394 197 0 0 chr12 52882543 52882614 -90903841 - MER63C DNA MER1_type 0 930 860 1949 149 0 7 chr12 52882616 52882918 -90903537 - AluSx SINE Alu -12 300 1 892 195 97 0 chr12 52883624 52883809 -90902646 - MER3 DNA MER1_type -6 203 1 1255 214 36 33 chr12 52883860 52883924 -90902531 - MLT1E1 LTR MaLR -2 652 590 180 0 0 0 chr12 52883924 52883944 -90902511 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2102 101 0 0 chr12 52883946 52884233 -90902222 - AluSc SINE Alu -22 287 1 1255 214 36 33 chr12 52884233 52884497 -90901958 - MLT1E1 LTR MaLR -64 590 320 2011 129 0 0 chr12 52884589 52884891 -90901564 + AluSx SINE Alu 1 302 -10 747 221 19 0 chr12 52884931 52885089 -90901366 - MLT1E1 LTR MaLR -390 264 104 501 257 69 0 chr12 52885064 52885208 -90901247 - MLT1E LTR MaLR -436 157 4 * 724 254 157 41 chr12 52885232 52885364 -90901091 - L1ME4a LINE L1 -69 6052 5937 709 148 74 20 chr12 52885364 52885513 -90900942 - L1MA9 LINE L1 0 6312 6156 724 254 157 41 chr12 52885513 52885864 -90900591 - L1ME4a LINE L1 -184 5937 5513 1972 131 0 13 chr12 52886247 52886569 -90899886 + AluJo SINE Alu 1 312 0 387 238 102 61 chr12 52886828 52886975 -90899480 + MIR3 SINE MIR 46 198 -10 289 335 18 24 chr12 52887332 52887502 -90898953 - L2 LINE L2 -2930 384 216 228 359 0 0 chr12 52887621 52887685 -90898770 + MIR SINE MIR 189 252 -10 188 353 0 29 chr12 52887629 52887697 -90898758 + L2 LINE L2 3203 3268 -4 * 303 342 60 0 chr12 52887977 52888094 -90898361 + L2 LINE L2 3149 3272 0 2511 171 49 86 chr12 52888241 52888857 -90897598 + MER77 LTR ERV1 1 593 -12 565 270 188 20 chr12 52888958 52889251 -90897204 - L2 LINE L2 0 3313 2972 334 330 56 22 chr12 52889291 52889470 -90896985 - MER5A DNA MER1_type -3 186 2 182 250 0 0 chr12 52889497 52889537 -90896918 - L2 LINE L2 -86 3186 3147 804 280 35 19 chr12 52890065 52890326 -90896129 + LTR16A1 LTR ERVL 161 425 -32 327 339 0 8 chr12 52890734 52890852 -90895603 + L2 LINE L2 2990 3106 -166 22 56 0 0 chr12 52891532 52891568 -90894887 + AT_rich Low_complexity Low_complexity 1 36 0 1430 115 126 19 chr12 52891734 52892004 -90894451 + AluJb SINE Alu 1 299 -13 216 158 0 0 chr12 52892804 52892842 -90893613 + CT-rich Low_complexity Low_complexity 2 39 0 22 0 0 0 chr12 52892969 52892991 -90893464 + GC_rich Low_complexity Low_complexity 1 22 0 614 258 69 58 chr12 52893147 52893438 -90893017 - L2 LINE L2 -17 3296 3003 320 265 61 30 chr12 52893560 52893692 -90892763 - MER112 DNA MER1_type -70 190 55 204 135 0 0 chr12 52893774 52893811 -90892644 + (TA)n Simple_repeat Simple_repeat 2 38 0 2643 202 57 40 chr12 52893813 52893995 -90892460 - L1MD3 LINE L1 -6 7989 7812 2106 100 10 0 chr12 52893995 52894285 -90892170 - AluSx SINE Alu -19 293 1 2643 202 57 40 chr12 52894285 52894707 -90891748 - L1MD3 LINE L1 -183 7812 7399 277 111 0 93 chr12 52894707 52894761 -90891694 - MLT1F1 LTR MaLR -471 96 48 2643 202 57 40 chr12 52894761 52895052 -90891403 - L1MD3 LINE L1 -596 7399 6800 323 274 28 19 chr12 52895059 52895165 -90891290 + L1MCa LINE L1 1974 2080 -4346 328 167 46 9 chr12 52895171 52895279 -90891176 + (TATAA)n Simple_repeat Simple_repeat 4 115 0 403 272 183 21 chr12 52895379 52895570 -90890885 + MLT1J LTR MaLR 4 225 -286 2262 82 0 3 chr12 52895571 52895875 -90890580 + AluSg SINE Alu 1 303 -7 412 246 54 8 chr12 52896588 52896718 -90889737 - MIR SINE MIR -108 154 19 1279 244 119 53 chr12 52897191 52897704 -90888751 - MLT1H1 LTR MaLR -6 549 3 2105 103 0 22 chr12 52897736 52898048 -90888407 - AluSq SINE Alu -8 305 1 289 219 49 0 chr12 52898179 52898261 -90888194 - MER63C DNA MER1_type -373 557 472 1692 181 28 17 chr12 52898296 52898656 -90887799 - MER63C DNA MER1_type -429 501 138 16081 123 11 10 chr12 52898664 52901056 -90885399 + Tigger1 DNA MER2_type 24 2418 0 370 147 0 0 chr12 52901058 52901126 -90885329 - MER63C DNA MER1_type -794 136 69 2540 225 124 8 chr12 52901499 52902143 -90884312 + HsTC2c DNA Tc2 7 725 -4 2109 107 0 0 chr12 52902356 52902647 -90883808 - AluSx SINE Alu -19 293 3 1400 226 59 87 chr12 52902664 52903156 -90883299 - L1ME3A LINE L1 -3 6167 5690 246 270 36 72 chr12 52903158 52903269 -90883186 + L2 LINE L2 3078 3184 -88 968 183 15 10 chr12 52903290 52903487 -90882968 + L1MC5 LINE L1 6990 7187 -774 3799 124 9 0 chr12 52903488 52904012 -90882443 - MER1A DNA MER1_type 0 529 1 937 208 127 81 chr12 52904114 52904409 -90882046 + L1MC5 LINE L1 7340 7620 -341 2206 91 10 0 chr12 52904409 52904706 -90881749 - AluSp SINE Alu -12 301 2 937 208 127 81 chr12 52904706 52904963 -90881492 + L1MC5 LINE L1 7620 7917 -44 222 290 0 0 chr12 52904995 52905057 -90881398 + L2 LINE L2 3252 3313 0 2295 230 102 5 chr12 52905384 52905980 -90880475 + L1MC4a LINE L1 5382 6035 -1773 472 208 280 0 chr12 52906039 52906164 -90880291 + MER63A DNA MER1_type 50 209 -1 1930 126 0 17 chr12 52906248 52906549 -90879906 - AluSx SINE Alu -16 296 1 6800 49 142 8 chr12 52907413 52908319 -90878136 - L1P LINE L1 -5116 1030 3 2347 84 10 0 chr12 52908361 52908710 -90877745 - AluSq SINE Alu 0 352 1 1185 269 108 4 chr12 52908712 52909222 -90877233 - L1ME3A LINE L1 -816 5330 4768 1521 267 133 6 chr12 52909245 52910013 -90876442 - L2 LINE L2 -2 3311 2445 336 276 58 75 chr12 52910146 52910300 -90876155 - L2 LINE L2 -205 3067 2915 2957 214 34 3 chr12 52910300 52910866 -90875589 - MER119 DNA MER1_type 0 583 1 336 276 58 75 chr12 52910866 52910885 -90875570 - L2 LINE L2 -357 2915 2897 2217 91 0 24 chr12 52910895 52911193 -90875262 - AluSg SINE Alu -15 295 5 974 100 0 8 chr12 52911200 52911330 -90875125 - AluSq/x SINE Alu -180 133 5 195 370 97 22 chr12 52911704 52912015 -90874440 - L2 LINE L2 -357 2957 2624 249 260 90 30 chr12 52912043 52912143 -90874312 - MLT1H LTR MaLR -12 537 432 1585 154 0 4 chr12 52912364 52912604 -90873851 + AluSx SINE Alu 59 297 -15 2170 123 0 3 chr12 52912669 52912969 -90873486 + AluSx SINE Alu 1 299 -13 690 301 12 47 chr12 52913114 52913250 -90873205 - MIR SINE MIR -6 256 132 1977 140 0 31 chr12 52913250 52913571 -90872884 + AluJb SINE Alu 1 311 -1 690 301 12 47 chr12 52913571 52913690 -90872765 - MIR SINE MIR -130 132 10 249 83 0 0 chr12 52914414 52914450 -90872005 + (TG)n Simple_repeat Simple_repeat 1 36 0 483 312 73 15 chr12 52914557 52914762 -90871693 - L3 LINE CR1 -85 1492 1276 2456 70 7 0 chr12 52915386 52915687 -90870768 - AluSp SINE Alu -10 303 1 204 217 0 83 chr12 52915727 52915787 -90870668 + L2 LINE L2 3208 3262 -10 205 292 0 0 chr12 52915810 52915858 -90870597 - L2 LINE L2 -1 3312 3265 2961 123 170 11 chr12 52915880 52916427 -90870028 - MER51A LTR ERV1 0 634 1 828 209 58 29 chr12 52916483 52916760 -90869695 + L1MEc LINE L1 2072 2356 -4040 1048 85 110 6 chr12 52916780 52916944 -90869511 - L1MA8 LINE L1 -1 6290 6110 1405 247 7 0 chr12 52916982 52917282 -90869173 - AluSx SINE Alu 0 302 1 270 95 0 0 chr12 52917305 52917347 -90869108 + (T)n Simple_repeat Simple_repeat 1 42 0 217 277 31 0 chr12 52917378 52917508 -90868947 + CT-rich Low_complexity Low_complexity 1 134 0 201 74 0 0 chr12 52917564 52917591 -90868864 + (C)n Simple_repeat Simple_repeat 1 27 0 20548 44 53 3 chr12 52917738 52920327 -90866128 - L1P LINE L1 -3428 2718 1 * 20903 38 3 3 chr12 52920318 52922857 -90863598 - L1P LINE L1 -2999 3147 611 346 189 32 11 chr12 52922981 52923076 -90863379 - L1ME LINE L1 -719 5443 5347 * 2653 235 99 21 chr12 52923073 52923872 -90862583 + L1MC4 LINE L1 6811 7671 -371 3497 105 21 8 chr12 52923892 52924376 -90862079 + MER1A DNA MER1_type 40 529 0 806 246 42 21 chr12 52924394 52924634 -90861821 + L1MC4 LINE L1 7689 7933 -109 213 170 21 21 chr12 52924634 52924681 -90861774 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 4727 60 23 0 chr12 52924688 52925302 -90861153 - MER11C LTR ERVK 0 1071 444 6708 109 6 18 chr12 52925402 52926396 -90860059 + Tigger1 DNA MER2_type 672 1653 -765 4589 60 3 3 chr12 52926397 52926968 -90859487 + L1PA6 LINE L1 5542 6112 -42 784 249 75 9 chr12 52927080 52927293 -90859162 + MIR SINE MIR 28 254 -8 259 321 15 58 chr12 52927892 52928051 -90858404 - MIR SINE MIR -59 149 16 2730 162 31 35 chr12 52928332 52928715 -90857740 + Tigger1 DNA MER2_type 33 415 -2003 2112 140 0 6 chr12 52928715 52929029 -90857426 + AluSx SINE Alu 1 312 0 2730 162 31 35 chr12 52929029 52929156 -90857299 + Tigger1 DNA MER2_type 415 541 -1877 249 209 93 0 chr12 52929158 52929244 -90857211 - FRAM SINE Alu -37 129 36 4084 133 24 11 chr12 52929558 52930311 -90856144 - L1MA8 LINE L1 -346 5945 5183 * 9284 206 60 66 chr12 52930297 52930753 -90855702 + L1ME1 LINE L1 2222 2679 -3467 1996 156 0 10 chr12 52930753 52931060 -90855395 + AluSx SINE Alu 1 304 -8 9284 206 60 66 chr12 52931060 52931475 -90854980 + L1ME1 LINE L1 2679 3095 -3051 1933 98 4 4 chr12 52931475 52931730 -90854725 + AluSq SINE Alu 38 292 -21 9284 206 60 66 chr12 52931730 52932168 -90854287 + L1ME1 LINE L1 3095 3534 -2612 1842 166 0 3 chr12 52932168 52932464 -90853991 + AluJo SINE Alu 1 295 -17 2054 96 33 17 chr12 52932466 52932768 -90853687 + AluSq SINE Alu 1 307 -6 9284 206 60 66 chr12 52932768 52934411 -90852044 + L1ME1 LINE L1 3535 5162 -984 1006 174 0 0 chr12 52934418 52934579 -90851876 - FAM SINE Alu -13 172 12 3534 186 37 72 chr12 52934592 52934742 -90851713 + L1ME1 LINE L1 5158 5312 -854 580 252 8 0 chr12 52934742 52934861 -90851594 - FLAM_A SINE Alu -13 120 1 3534 186 37 72 chr12 52934861 52935715 -90850740 + L1ME1 LINE L1 5312 6122 -44 525 166 194 29 chr12 52935612 52935751 -90850704 + L1MA10 LINE L1 6169 6330 -4 * 296 349 8 0 chr12 52935780 52935912 -90850543 - MIR SINE MIR -24 238 106 314 270 162 51 chr12 52936433 52936795 -90849660 - L1M2 LINE L1 -5420 1429 856 207 254 0 17 chr12 52937922 52937981 -90848474 + G-rich Low_complexity Low_complexity 3 60 0 214 147 0 0 chr12 52938134 52938168 -90848287 + (CCG)n Simple_repeat Simple_repeat 1 34 0 195 114 0 0 chr12 52938840 52938875 -90847580 + (CCCCCT)n Simple_repeat Simple_repeat 3 37 0 428 283 138 14 chr12 52940902 52941047 -90845408 - L3 LINE CR1 -11 1566 1404 935 220 21 12 chr12 52941511 52941752 -90844703 + AluJo SINE Alu 22 264 -48 389 240 0 10 chr12 52941780 52941880 -90844575 - Tigger1 DNA MER2_type -1901 517 419 26 50 0 0 chr12 52942227 52942267 -90844188 + GC_rich Low_complexity Low_complexity 1 40 0 184 311 66 0 chr12 52946977 52947038 -90839417 - L3 LINE CR1 -1138 439 375 22 35 0 0 chr12 52947633 52947662 -90838793 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr12 52947856 52947881 -90838574 + (T)n Simple_repeat Simple_repeat 1 25 0 966 90 69 0 chr12 52948174 52948319 -90838136 + L1MA5A LINE L1 6142 6296 -1 1447 191 33 4 chr12 52948349 52948622 -90837833 + L1MB3 LINE L1 5891 6171 -12 216 0 0 0 chr12 52948622 52948646 -90837809 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 3435 205 42 66 chr12 52949010 52950460 -90835995 - L1ME1 LINE L1 0 6560 5157 245 51 26 0 chr12 52950473 52950512 -90835943 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2108 102 16 22 chr12 52950518 52950833 -90835622 - AluSp SINE Alu 0 313 1 1495 149 0 0 chr12 52950839 52951067 -90835388 - L1PA15 LINE L1 -2 6163 5936 13699 175 14 22 chr12 52951117 52952826 -90833629 - L1PB1 LINE L1 0 6867 5147 279 0 0 0 chr12 52952826 52952857 -90833598 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 13699 175 14 22 chr12 52952857 52952893 -90833562 - L1PB1 LINE L1 -1720 5147 5112 2253 105 3 3 chr12 52952893 52953198 -90833257 - AluSx SINE Alu -7 305 1 13699 175 14 22 chr12 52953198 52954010 -90832445 - L1PB1 LINE L1 -1755 5112 4295 2377 57 40 7 chr12 52954010 52954311 -90832144 - AluY SINE Alu 0 311 1 13699 175 14 22 chr12 52954311 52955608 -90830847 - L1PB1 LINE L1 -2572 4295 3041 1055 90 0 0 chr12 52955609 52955743 -90830712 + AluSx SINE Alu 1 134 -179 1747 14 0 33 chr12 52955743 52955955 -90830500 + L1PA4 LINE L1 5919 6123 -32 241 80 20 20 chr12 52955963 52956013 -90830442 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 1423 84 0 16 chr12 52956013 52956194 -90830261 + AluSx SINE Alu 126 305 -7 3495 117 84 8 chr12 52956205 52956854 -90829601 - L1PB1 LINE L1 -3818 3044 2357 * 7398 219 68 43 chr12 52956842 52957191 -90829264 - L1ME1 LINE L1 -1373 5167 4828 1993 48 107 11 chr12 52957191 52957462 -90828993 - AluY SINE Alu -14 297 1 7398 219 68 43 chr12 52957462 52957491 -90828964 - L1ME1 LINE L1 -1712 4828 4801 207 0 0 0 chr12 52957491 52957514 -90828941 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2096 104 14 4 chr12 52957516 52957795 -90828660 - AluSq SINE Alu -31 282 1 7398 219 68 43 chr12 52957795 52958156 -90828299 - L1ME1 LINE L1 -1739 4801 4451 1768 164 3 23 chr12 52958156 52958461 -90827994 - AluJb SINE Alu -9 303 5 7398 219 68 43 chr12 52958461 52958733 -90827722 - L1ME1 LINE L1 -2089 4451 4187 2172 113 3 3 chr12 52958733 52959024 -90827431 - AluSq SINE Alu -22 291 1 7398 219 68 43 chr12 52959024 52960455 -90826000 - L1ME1 LINE L1 -2353 4187 2667 1572 143 4 15 chr12 52960453 52960718 -90825737 - L1MD3 LINE L1 -3 7992 7731 * 3383 201 93 89 chr12 52960746 52960849 -90825606 - L1ME1 LINE L1 -3892 2648 2547 1116 115 6 0 chr12 52960849 52961014 -90825441 - L1MB1 LINE L1 -1 6167 6002 3383 201 93 89 chr12 52961014 52961277 -90825178 - L1ME1 LINE L1 -3993 2547 2287 1772 189 7 0 chr12 52961277 52961579 -90824876 + AluJb SINE Alu 3 306 -6 3383 201 93 89 chr12 52961579 52961729 -90824726 - L1ME1 LINE L1 -4253 2287 2139 1566 184 3 49 chr12 52961729 52962034 -90824421 - AluJo SINE Alu -21 291 1 3383 201 93 89 chr12 52962034 52962355 -90824100 - L1ME1 LINE L1 -4401 2139 1821 1631 117 113 15 chr12 52962355 52962629 -90823826 + AluSq SINE Alu 1 301 -12 3383 201 93 89 chr12 52962629 52962640 -90823815 - L1ME1 LINE L1 -4719 1821 1812 1940 149 7 3 chr12 52962640 52962936 -90823519 + AluJo SINE Alu 1 297 -15 3383 201 93 89 chr12 52962936 52963857 -90822598 - L1ME1 LINE L1 -4728 1812 907 287 290 67 82 chr12 52964322 52964461 -90821994 - L1ME1 LINE L1 -6191 349 209 459 0 0 0 chr12 52964461 52964512 -90821943 + (CA)n Simple_repeat Simple_repeat 2 52 0 287 290 67 82 chr12 52964512 52964703 -90821752 - L1ME1 LINE L1 -6331 209 24 34 42 0 0 chr12 52964884 52964932 -90821523 + AT_rich Low_complexity Low_complexity 1 48 0 797 247 35 103 chr12 52965121 52965498 -90820957 - L1MC4a LINE L1 -1884 5924 5574 361 288 54 9 chr12 52966572 52966683 -90819772 + MARNA DNA Mariner 94 209 -377 1927 131 14 11 chr12 52966714 52966996 -90819459 + AluJo SINE Alu 7 289 -23 7462 204 86 68 chr12 52968146 52968729 -90817726 - L1MC3 LINE L1 0 7785 7213 286 299 0 62 chr12 52968729 52968826 -90817629 - MLT1F1 LTR MaLR -442 125 35 7462 204 86 68 chr12 52968826 52969615 -90816840 - L1MC3 LINE L1 -572 7213 6439 8223 20 2 0 chr12 52969615 52970890 -90815565 - L1PA4 LINE L1 -1 6154 4876 7462 204 86 68 chr12 52970890 52971594 -90814861 - L1MC3 LINE L1 -1346 6439 5575 1645 214 33 0 chr12 52971965 52972297 -90814158 - MER74B LTR ERVL -67 555 213 267 226 0 0 chr12 52972332 52972385 -90814070 - MER74B LTR ERVL -569 53 1 306 244 22 33 chr12 52972547 52972637 -90813818 - L2 LINE L2 0 3272 3184 296 140 21 65 chr12 52972785 52972878 -90813577 + (TTTA)n Simple_repeat Simple_repeat 1 89 0 327 280 72 56 chr12 52973122 52973318 -90813137 + MIR SINE MIR 21 222 -40 2034 124 0 3 chr12 52973397 52973680 -90812775 - AluSc SINE Alu -27 282 1 510 282 91 55 chr12 52974998 52975279 -90811176 + L3 LINE CR1 1233 1529 -48 1176 158 27 40 chr12 52975279 52975501 -90810954 - MER20 DNA MER1_type 0 219 1 510 282 91 55 chr12 52975501 52975549 -90810906 + L3 LINE CR1 1529 1574 -3 207 0 0 0 chr12 52975582 52975605 -90810850 + (A)n Simple_repeat Simple_repeat 1 23 0 218 295 39 0 chr12 52976013 52976091 -90810364 + MIR SINE MIR 54 134 -128 3051 134 17 4 chr12 52976096 52976567 -90809888 - L1MB3 LINE L1 -7 6176 5700 538 261 0 8 chr12 52978930 52979060 -90807395 + MIR SINE MIR 84 212 -50 550 250 110 48 chr12 52979911 52980247 -90806208 + L1ME3A LINE L1 5598 5954 -216 306 246 257 11 chr12 52980441 52980628 -90805827 + L1ME4a LINE L1 5859 6091 -30 2178 107 7 3 chr12 52980633 52980948 -90805507 - AluSx SINE Alu 0 317 2 517 274 43 102 chr12 52981208 52981463 -90804992 + L2 LINE L2 3014 3253 -19 231 36 0 0 chr12 52981469 52981497 -90804958 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2247 101 0 7 chr12 52981988 52982295 -90804160 - AluY SINE Alu -6 305 1 12921 110 25 25 chr12 52982870 52984486 -90801969 + Tigger1 DNA MER2_type 1 1616 -802 2462 78 0 0 chr12 52984486 52984782 -90801673 - AluSc SINE Alu -13 296 1 12921 110 25 25 chr12 52984782 52984980 -90801475 + Tigger1 DNA MER2_type 1616 1818 -600 1879 119 14 4 chr12 52984980 52985258 -90801197 - AluJb SINE Alu -14 298 18 12921 110 25 25 chr12 52985258 52985401 -90801054 + Tigger1 DNA MER2_type 1817 1959 -459 1047 148 0 12 chr12 52985401 52985570 -90800885 - FRAM SINE Alu -3 173 7 1961 133 0 32 chr12 52985570 52985885 -90800570 + Tigger1 DNA MER2_type 1951 2255 -163 1515 158 25 59 chr12 52985885 52986208 -90800247 - AluJb SINE Alu 0 312 1 342 0 0 0 chr12 52986210 52986248 -90800207 + (T)n Simple_repeat Simple_repeat 1 38 0 415 298 8 46 chr12 52987240 52987478 -90798977 + Tigger1 DNA MER2_type 2012 2240 -178 616 297 19 55 chr12 52987504 52987814 -90798641 - AluJb SINE Alu -3 299 1 288 0 0 0 chr12 52987817 52987849 -90798606 + (T)n Simple_repeat Simple_repeat 1 32 0 972 173 12 0 chr12 52987849 52988017 -90798438 + Tigger1 DNA MER2_type 2249 2418 0 1594 153 104 52 chr12 52988634 52988961 -90797494 - MER2 DNA MER2_type 0 344 1 442 246 21 4 chr12 52989031 52989141 -90797314 + MIR SINE MIR 13 121 -87 212 263 79 0 chr12 52990230 52990306 -90796149 - MIR SINE MIR -41 221 140 302 265 72 0 chr12 52990927 52991010 -90795445 + MIR SINE MIR 124 212 -50 223 289 0 0 chr12 52991495 52991547 -90794908 + L2 LINE L2 3262 3313 0 921 228 94 5 chr12 52991853 52992077 -90794378 + MIR SINE MIR 3 246 -16 6574 68 11 51 chr12 52992115 52993570 -90792885 + SVA Other Other 306 1381 -5 268 74 0 37 chr12 52993574 52993628 -90792827 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 384 326 76 0 chr12 52993718 52993862 -90792593 - L2 LINE L2 -559 2755 2601 796 203 42 0 chr12 52993872 52994015 -90792440 - MER58B DNA MER1_type -14 327 179 851 139 46 7 chr12 52994019 52994170 -90792285 + L1MB3 LINE L1 6025 6181 -2 816 151 0 16 chr12 52994676 52994802 -90791653 + FLAM_A SINE Alu 10 133 -9 881 209 13 13 chr12 52995810 52995968 -90790487 - FAM SINE Alu -16 159 2 2633 102 11 3 chr12 52996054 52996406 -90790049 - THE1A LTR MaLR 0 355 1 12449 93 5 2 chr12 52996406 52997981 -90788474 - THE1A-int LTR MaLR 0 1580 1 1088 54 0 0 chr12 52997981 52998110 -90788345 - THE1A LTR MaLR 0 355 227 507 123 0 0 chr12 52998111 52998184 -90788271 - AluSg SINE Alu -9 301 229 1283 57 0 0 chr12 52998184 52998342 -90788113 + MER9 LTR ERVK 3 160 -351 4112 90 0 4 chr12 52998358 52998871 -90787584 - MER9 LTR ERVK 0 511 1 1709 119 0 4 chr12 52998871 52999107 -90787348 - AluSg SINE Alu -75 235 1 1440 119 26 4 chr12 52999107 52999334 -90787121 - THE1A LTR MaLR -123 232 1 880 341 97 35 chr12 52999640 53000530 -90785925 + L2 LINE L2 2255 3206 -66 4093 147 71 35 chr12 53000584 53000642 -90785813 - L1MB4 LINE L1 -6 6174 6120 1929 84 0 0 chr12 53000642 53000879 -90785576 + AluSq SINE Alu 1 237 -76 4093 147 71 35 chr12 53000879 53002252 -90784203 - L1MB4 LINE L1 -60 6120 4696 803 183 0 8 chr12 53002289 53002415 -90784040 - FLAM_C SINE Alu -17 126 2 1760 161 3 37 chr12 53002516 53002814 -90783641 - AluSx SINE Alu -24 288 1 1496 180 30 30 chr12 53002976 53003276 -90783179 - AluJo SINE Alu -10 302 3 309 321 148 19 chr12 53003504 53003666 -90782789 + MIR3 SINE MIR 7 189 -19 1328 248 62 15 chr12 53003826 53004332 -90782123 + L1P5 LINE L1 4902 5441 -713 * 1932 135 84 70 chr12 53004331 53004745 -90781710 + L1MB5 LINE L1 5371 5790 -384 1054 75 106 12 chr12 53004784 53004944 -90781511 - L1MA5 LINE L1 -2 6298 6124 6286 141 24 1 chr12 53004970 53006076 -90780379 - L1M LINE L1 -746 5400 4293 1607 184 98 6 chr12 53006083 53006410 -90780045 + L1MB5 LINE L1 5810 6166 -8 2085 210 103 17 chr12 53006430 53007075 -90779380 + L1ME3 LINE L1 5437 6162 0 684 254 46 0 chr12 53008236 53008409 -90778046 + MIR SINE MIR 77 257 -5 297 257 105 9 chr12 53008742 53008847 -90777608 + MIR3 SINE MIR 78 192 -16 1184 80 0 0 chr12 53011508 53011659 -90774796 - AluSg/x SINE Alu -6 304 154 2267 115 0 0 chr12 53011817 53012112 -90774343 - AluSx SINE Alu -17 295 1 246 200 22 0 chr12 53012205 53012250 -90774205 + MIR SINE MIR 76 121 -87 2858 78 3 11 chr12 53012314 53012674 -90773781 - L1PA11 LINE L1 0 6174 5818 1982 181 130 30 chr12 53013240 53013386 -90773069 - MER34 LTR ERV1 0 542 412 2347 109 0 0 chr12 53013386 53013688 -90772767 + AluSg SINE Alu 1 302 -8 1982 181 130 30 chr12 53013688 53014010 -90772445 - MER34 LTR ERV1 -130 412 27 311 284 0 39 chr12 53014191 53014318 -90772137 - L3b LINE CR1 -360 1223 1102 818 157 81 60 chr12 53014950 53015135 -90771320 - AluJo SINE Alu -1 311 123 2483 77 3 0 chr12 53015506 53015805 -90770650 + AluSp SINE Alu 1 300 -13 501 276 112 7 chr12 53015883 53016035 -90770420 - MIR3 SINE MIR -6 202 35 180 167 0 111 chr12 53016328 53016382 -90770073 + MIR SINE MIR 67 114 -148 1753 130 16 0 chr12 53016458 53016712 -90769743 - Tigger3(Golem) DNA MER2_type 0 3038 2781 629 214 50 43 chr12 53016709 53016849 -90769606 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 247 325 146 8 chr12 53016851 53016974 -90769481 + MIR3 SINE MIR 16 155 -53 299 338 45 17 chr12 53017864 53017996 -90768459 + MIR SINE MIR 28 161 -62 341 292 78 36 chr12 53018431 53018623 -90767832 - L2 LINE L2 0 3313 3114 572 330 180 14 chr12 53019580 53020406 -90766049 + L2 LINE L2 1527 2489 -825 261 331 7 31 chr12 53020451 53020595 -90765860 - MIR SINE MIR -67 141 3 1816 146 92 3 chr12 53020694 53021009 -90765446 - MER2 DNA MER2_type -1 343 1 397 301 30 133 chr12 53021237 53021735 -90764720 - L2 LINE L2 0 3272 2826 2269 100 0 7 chr12 53021940 53022239 -90764216 - AluSx SINE Alu -15 297 1 771 282 31 27 chr12 53022325 53022584 -90763871 - MIR SINE MIR -1 261 2 204 283 0 33 chr12 53023092 53023152 -90763303 + L3 LINE CR1 1481 1538 -39 200 320 75 95 chr12 53023157 53023304 -90763151 + MIR3 SINE MIR 16 159 -49 864 217 98 33 chr12 53023333 53023577 -90762878 + MIR SINE MIR 3 262 0 1344 191 0 0 chr12 53024726 53025003 -90761452 + L1P2 LINE L1 5421 5697 -458 22 0 0 0 chr12 53025135 53025157 -90761298 + GC_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr12 53025506 53025551 -90760904 + GC_rich Low_complexity Low_complexity 1 45 0 9633 111 19 29 chr12 53025663 53026813 -90759642 + Tigger1 DNA MER2_type 481 1640 -778 2462 78 0 0 chr12 53026813 53027109 -90759346 - AluSc SINE Alu -13 296 1 9633 111 19 29 chr12 53027109 53027307 -90759148 + Tigger1 DNA MER2_type 1640 1816 -602 1879 119 14 4 chr12 53027307 53027585 -90758870 - AluJb SINE Alu -14 298 18 9633 111 19 29 chr12 53027585 53027728 -90758727 + Tigger1 DNA MER2_type 1816 1959 -459 1047 148 0 12 chr12 53027728 53027897 -90758558 - FRAM SINE Alu -3 173 7 1978 133 0 31 chr12 53027897 53028214 -90758241 + Tigger1 DNA MER2_type 1951 2257 -161 282 301 47 80 chr12 53028221 53028497 -90757958 - AluSq SINE Alu 0 303 37 12979 141 10 18 chr12 53028930 53029575 -90756880 - L1MA2 LINE L1 -20 6284 5635 2241 99 6 40 chr12 53029575 53029898 -90756557 - AluSx SINE Alu 0 312 1 12979 141 10 18 chr12 53029898 53032539 -90753916 - L1MA2 LINE L1 -669 5635 3023 4031 93 0 8 chr12 53032545 53033059 -90753396 - MER9 LTR ERVK 0 511 2 2295 113 12 3 chr12 53033060 53033395 -90753060 - HERVK9 LTR ERVK 0 5916 4923 17890 67 3 1 chr12 53033436 53036067 -90750388 - HERVK9 LTR ERVK -282 5634 2950 11031 57 1 1 chr12 53036068 53037513 -90748942 - HERVK9 LTR ERVK -3137 2779 1268 4785 73 0 0 chr12 53037513 53038105 -90748350 - HERVK9 LTR ERVK -5324 592 1 3958 97 0 10 chr12 53038105 53038621 -90747834 - MER9 LTR ERVK 0 511 1 14257 133 29 24 chr12 53038621 53039142 -90747313 - L1 LINE L1 -3124 4441 3924 1831 175 0 3 chr12 53039142 53039434 -90747021 - AluJb SINE Alu -21 291 1 14257 133 29 24 chr12 53039434 53040046 -90746409 - L1 LINE L1 -3641 3924 3317 2192 118 23 0 chr12 53040046 53040351 -90746104 - AluSp SINE Alu 0 313 2 14257 133 29 24 chr12 53040351 53042190 -90744265 - L1 LINE L1 -4248 3317 1456 647 110 0 0 chr12 53042191 53042273 -90744182 + AluSq/x SINE Alu 29 110 -202 281 179 0 54 chr12 53042278 53042334 -90744121 + L2 LINE L2 3168 3220 -52 1883 158 17 3 chr12 53042369 53042666 -90743789 + AluSx SINE Alu 1 301 -11 726 176 32 0 chr12 53042666 53042791 -90743664 - L1 LINE L1 -6100 1465 1337 759 117 18 0 chr12 53042963 53043074 -90743381 - FLAM_A SINE Alu -10 132 20 441 0 0 0 chr12 53045431 53045480 -90740975 + (TG)n Simple_repeat Simple_repeat 2 50 0 202 277 92 0 chr12 53045939 53046004 -90740451 + L2 LINE L2 3230 3300 -13 23 0 0 0 chr12 53046612 53046635 -90739820 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 134 0 chr12 53047107 53047189 -90739266 + L2 LINE L2 3134 3226 -46 209 214 0 0 chr12 53048449 53048491 -90737964 - L3 LINE CR1 -12 1565 1524 349 326 5 38 chr12 53048670 53048854 -90737601 + GA-rich Low_complexity Low_complexity 1 178 0 397 269 27 25 chr12 53048996 53049178 -90737277 - MIR SINE MIR 0 262 18 635 299 53 20 chr12 53049219 53049463 -90736992 - MIR SINE MIR -3 259 8 180 77 0 0 chr12 53050742 53050768 -90735687 + (TC)n Simple_repeat Simple_repeat 2 27 0 190 0 67 0 chr12 53050768 53050798 -90735657 + (CA)n Simple_repeat Simple_repeat 1 32 0 420 293 177 5 chr12 53051669 53051884 -90734571 - L2 LINE L2 -812 2502 2251 291 304 121 28 chr12 53051940 53052125 -90734330 + MIR SINE MIR 17 219 -43 328 289 41 0 chr12 53052431 53052528 -90733927 - MIR3 SINE MIR -15 193 93 1924 186 34 135 chr12 53052710 53053324 -90733131 - L1MC4 LINE L1 -182 7860 7309 856 115 28 84 chr12 53053325 53053534 -90732921 - MER6 DNA MER2_type 0 865 -65 1202 204 112 13 chr12 53053581 53053885 -90732570 - L1MC4 LINE L1 -938 7104 6771 537 143 77 0 chr12 53053894 53053985 -90732470 + FLAM_A SINE Alu 45 142 0 735 243 84 34 chr12 53053997 53054236 -90732219 - L1MC4a LINE L1 -1113 6695 6445 279 161 36 18 chr12 53055495 53055551 -90730904 + MER81 DNA DNA 58 114 0 228 189 226 0 chr12 53055561 53055614 -90730841 + MER81 DNA DNA 46 110 -4 943 192 0 0 chr12 53056001 53056157 -90730298 + FRAM SINE Alu 12 167 -9 330 188 256 0 chr12 53056244 53056361 -90730094 - Charlie1 DNA MER1_type -24 2737 2591 845 167 7 20 chr12 53056373 53056523 -90729932 + FAM SINE Alu 26 173 -12 698 183 0 0 chr12 53056545 53056649 -90729806 + FLAM_A SINE Alu 21 124 -18 1097 164 49 57 chr12 53056653 53056773 -90729682 - Charlie1 DNA MER1_type -161 2600 2481 216 0 0 0 chr12 53056773 53056797 -90729658 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2284 101 0 0 chr12 53056799 53057087 -90729368 - AluSx SINE Alu -24 288 1 1097 164 49 57 chr12 53057087 53057207 -90729248 - Charlie1 DNA MER1_type -281 2480 2359 563 159 0 0 chr12 53057207 53057295 -90729160 - Tigger7 DNA MER2_type 0 2487 2400 298 263 0 0 chr12 53057295 53057371 -90729084 + L1MC4 LINE L1 6628 6703 -1339 580 217 172 70 chr12 53057380 53057694 -90728761 + MER7A DNA MER2_type 1 344 -2 1596 186 15 0 chr12 53057707 53057971 -90728484 - Tigger7 DNA MER2_type -2219 268 1 266 259 35 0 chr12 53057996 53058054 -90728401 - Charlie1 DNA MER1_type -2701 60 1 2232 179 11 13 chr12 53058119 53058499 -90727956 - MSTD LTR MaLR -17 379 1 331 0 0 75 chr12 53059795 53059848 -90726607 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1556 158 7 48 chr12 53059848 53060140 -90726315 - AluJb SINE Alu -32 280 1 280 205 0 60 chr12 53060471 53060554 -90725901 - MARNA DNA Mariner -30 556 479 2470 126 6 6 chr12 53061514 53061880 -90724575 + MER47A DNA MER2_type 1 366 0 2287 112 0 0 chr12 53062704 53062999 -90723456 + AluSx SINE Alu 1 295 -17 1334 272 45 36 chr12 53063146 53064152 -90722303 + L1ME LINE L1 4780 5802 -360 1848 172 3 3 chr12 53065141 53065444 -90721011 - AluSx SINE Alu -9 303 1 1287 107 53 15 chr12 53066750 53066956 -90719499 - MER20 DNA MER1_type -5 214 1 21 0 0 0 chr12 53066974 53066995 -90719460 + AT_rich Low_complexity Low_complexity 1 21 0 523 259 146 6 chr12 53067085 53067243 -90719212 + MER5A DNA MER1_type 4 183 -6 249 303 15 96 chr12 53067931 53068129 -90718326 + MER5A DNA MER1_type 1 182 -7 225 289 230 11 chr12 53068138 53068325 -90718130 + L2 LINE L2 2579 2806 -508 22 0 0 0 chr12 53068550 53068572 -90717883 + AT_rich Low_complexity Low_complexity 1 22 0 2348 89 7 0 chr12 53072485 53072789 -90713666 + AluSp SINE Alu 1 306 -7 1150 61 0 0 chr12 53073069 53073201 -90713254 + AluY SINE Alu 1 132 -179 2336 96 0 3 chr12 53073207 53073509 -90712946 + AluY SINE Alu 3 303 -8 1147 130 66 2 chr12 53073880 53074405 -90712050 + L1MB8 LINE L1 5495 6176 -2 1567 169 84 0 chr12 53076364 53076637 -90709818 - AluJb SINE Alu -16 296 1 960 152 6 35 chr12 53077623 53077794 -90708661 - FRAM SINE Alu 0 166 1 1827 104 0 16 chr12 53078642 53078915 -90707540 - AluSq SINE Alu 0 313 45 2253 107 3 16 chr12 53079304 53079614 -90706841 + AluSx SINE Alu 1 306 -6 300 280 68 17 chr12 53079953 53080071 -90706384 + MIR SINE MIR 19 142 -66 402 143 0 0 chr12 53080928 53081005 -90705450 + (T)n Simple_repeat Simple_repeat 1 77 0 1893 148 13 30 chr12 53084642 53084947 -90701508 + AluSx SINE Alu 1 300 -12 511 328 64 16 chr12 53087795 53088045 -90698410 + MIR SINE MIR 1 262 0 180 301 60 0 chr12 53088070 53088153 -90698302 + MIR SINE MIR 156 243 -19 189 0 0 0 chr12 53088658 53088679 -90697776 + (T)n Simple_repeat Simple_repeat 1 21 0 189 74 0 0 chr12 53091846 53091873 -90694582 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1193 201 5 18 chr12 53092047 53092271 -90694184 + AluJb SINE Alu 85 305 -7 366 271 203 28 chr12 53092310 53092561 -90693894 - L2 LINE L2 -3 3310 3016 1608 151 26 39 chr12 53092573 53092884 -90693571 + AluJo SINE Alu 1 307 -5 904 290 136 37 chr12 53093064 53093109 -90693346 - L2 LINE L2 -557 2757 2718 2275 103 0 19 chr12 53093109 53093419 -90693036 - AluSx SINE Alu -8 304 1 904 290 136 37 chr12 53093419 53094055 -90692400 - L2 LINE L2 -596 2718 2008 893 211 12 0 chr12 53094062 53094233 -90692222 + FAM SINE Alu 1 173 -2 2101 146 0 3 chr12 53094233 53094535 -90691920 + AluSx SINE Alu 1 301 -11 229 283 25 33 chr12 53095458 53095578 -90690877 - MIR SINE MIR -14 248 130 342 219 109 44 chr12 53096040 53096134 -90690321 - MER103 DNA DNA -13 153 46 1765 168 14 7 chr12 53096134 53096426 -90690029 + AluJb SINE Alu 1 294 -18 342 219 109 44 chr12 53096426 53096468 -90689987 - MER103 DNA DNA -120 46 8 604 201 216 15 chr12 53096491 53096695 -90689760 - MIR SINE MIR 0 262 18 1588 216 80 101 chr12 53096920 53097486 -90688969 - MLT2B3 LTR ERVL 0 554 1 42936 83 18 6 chr12 53097486 53102143 -90684312 - HERVL-B3-B3 LTR ERVL 0 5654 916 2309 105 0 0 chr12 53102143 53102438 -90684017 + AluSx SINE Alu 1 295 -17 42936 83 18 6 chr12 53102438 53103366 -90683089 - HERVL-B3-B3 LTR ERVL -4738 916 1 1766 203 139 52 chr12 53103367 53103870 -90682585 - MLT2B3 LTR ERVL -7 547 1 241 344 94 8 chr12 53104282 53104410 -90682045 - L3b LINE CR1 -126 1457 1319 1148 134 45 0 chr12 53104685 53104864 -90681591 - AluSg/x SINE Alu 0 312 126 2043 100 61 7 chr12 53104866 53105145 -90681310 - AluSx SINE Alu -18 294 1 231 333 17 0 chr12 53105497 53105614 -90680841 + L1ME LINE L1 5757 5875 -295 759 162 0 44 chr12 53105669 53105805 -90680650 + FLAM_C SINE Alu 3 132 -11 684 117 0 42 chr12 53106008 53106128 -90680327 + FLAM_A SINE Alu 28 142 0 2052 133 3 3 chr12 53106205 53106498 -90679957 - AluSx SINE Alu -19 293 1 22 0 0 0 chr12 53110079 53110101 -90676354 + AT_rich Low_complexity Low_complexity 1 22 0 218 122 24 0 chr12 53110897 53110938 -90675517 + (TA)n Simple_repeat Simple_repeat 2 43 0 215 150 25 0 chr12 53112569 53112609 -90673846 + (TG)n Simple_repeat Simple_repeat 1 41 0 849 174 18 12 chr12 53112666 53112833 -90673622 + MIR SINE MIR 48 215 -47 374 250 260 21 chr12 53113642 53113834 -90672621 + MIR SINE MIR 22 259 -3 2094 95 0 26 chr12 53113868 53114173 -90672282 + AluSx SINE Alu 2 298 -14 22 0 0 0 chr12 53114422 53114444 -90672011 + GC_rich Low_complexity Low_complexity 1 22 0 44 26 0 39 chr12 53114697 53114774 -90671681 + GC_rich Low_complexity Low_complexity 1 74 0 549 189 55 8 chr12 53115749 53115876 -90670579 - FLAM_C SINE Alu 0 133 1 182 256 0 0 chr12 53116275 53116318 -90670137 + L2 LINE L2 3268 3310 -3 829 123 0 8 chr12 53116324 53116446 -90670009 - FLAM_C SINE Alu -11 132 12 228 340 98 0 chr12 53116468 53116621 -90669834 + L2 LINE L2 2698 2865 -449 180 0 0 0 chr12 53116777 53116797 -90669658 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 2023 120 0 0 chr12 53116799 53117073 -90669382 - AluSx SINE Alu -34 278 5 181 309 15 15 chr12 53117144 53117212 -90669243 - L2 LINE L2 -4 3268 3201 248 289 96 19 chr12 53117286 53117390 -90669065 + L2 LINE L2 3141 3252 -20 210 194 119 15 chr12 53117962 53118029 -90668426 - L2 LINE L2 -1 3271 3198 221 320 17 39 chr12 53120301 53120479 -90665976 + GA-rich Low_complexity Low_complexity 2 175 0 22 35 0 0 chr12 53120951 53120980 -90665475 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 53121377 53121405 -90665050 + GC_rich Low_complexity Low_complexity 1 28 0 283 228 38 0 chr12 53122060 53122139 -90664316 + G-rich Low_complexity Low_complexity 5 86 0 29 28 0 0 chr12 53122232 53122268 -90664187 + GC_rich Low_complexity Low_complexity 1 36 0 222 264 56 0 chr12 53123497 53123569 -90662886 + MIR SINE MIR 36 111 -97 226 360 221 21 chr12 53124138 53124427 -90662028 - L2 LINE L2 0 3272 2926 320 295 66 16 chr12 53124475 53124597 -90661858 - MER91B DNA MER1_type -52 138 11 2141 118 0 0 chr12 53125139 53125443 -90661012 + AluSq SINE Alu 1 304 -9 460 189 11 0 chr12 53127021 53127111 -90659344 + MER45A DNA AcHobo 88 178 0 1972 89 0 62 chr12 53127225 53127564 -90658891 - AluSx SINE Alu 0 320 1 377 262 0 37 chr12 53127865 53127972 -90658483 + MIR3 SINE MIR 106 208 0 200 333 0 0 chr12 53128458 53128512 -90657943 + MIR SINE MIR 16 69 -139 1769 113 4 26 chr12 53129091 53129356 -90657099 - AluJo SINE Alu -12 300 42 260 217 0 98 chr12 53131812 53131904 -90654551 - MIR SINE MIR -116 92 10 501 267 21 11 chr12 53132470 53132623 -90653832 + MIR SINE MIR 11 162 -46 1900 92 114 11 chr12 53132632 53132913 -90653542 + AluSg SINE Alu 1 310 0 1787 171 0 3 chr12 53132923 53133210 -90653245 + AluJo SINE Alu 1 286 -26 499 312 43 0 chr12 53133238 53133376 -90653079 - MIR SINE MIR -35 227 84 261 298 173 10 chr12 53133620 53133724 -90652731 - MIR SINE MIR -56 206 86 1483 148 41 38 chr12 53133911 53134250 -90652205 + L1MC3 LINE L1 7054 7393 -392 1973 135 3 0 chr12 53134250 53134546 -90651909 + AluSx SINE Alu 1 297 -15 314 279 108 23 chr12 53134553 53134682 -90651773 - L1ME LINE L1 -382 5739 5600 180 182 0 45 chr12 53134722 53134766 -90651689 + L2 LINE L2 3027 3068 -204 205 299 216 0 chr12 53135165 53135262 -90651193 + MIR3 SINE MIR 58 175 -33 302 261 45 34 chr12 53135281 53135369 -90651086 + MIR SINE MIR 8 96 -166 1880 136 0 57 chr12 53135724 53136040 -90650415 - AluSx SINE Alu -9 303 6 226 360 221 21 chr12 53137351 53137640 -90648815 - L2 LINE L2 0 3272 2926 320 295 66 16 chr12 53137688 53137810 -90648645 - MER91B DNA MER1_type -52 138 11 2193 83 3 35 chr12 53138353 53138665 -90647790 + AluSq SINE Alu 1 302 -11 357 339 42 0 chr12 53139270 53139388 -90647067 + MIR SINE MIR 15 137 -125 890 150 0 0 chr12 53139394 53139527 -90646928 - AluSq/x SINE Alu -179 133 1 182 324 86 0 chr12 53139527 53139632 -90646823 + MIR SINE MIR 122 235 -27 180 274 221 44 chr12 53139641 53139754 -90646701 + MIR3 SINE MIR 58 190 -18 484 256 74 47 chr12 53139814 53140026 -90646429 - MIR SINE MIR -43 219 5 234 283 56 62 chr12 53140731 53140874 -90645581 + MIR3 SINE MIR 39 179 -29 182 218 18 73 chr12 53140961 53141016 -90645439 + MIR3 SINE MIR 157 208 0 323 227 0 11 chr12 53141752 53141840 -90644615 + GA-rich Low_complexity Low_complexity 4 90 0 1117 172 83 40 chr12 53141841 53142009 -90644446 + L1MA8 LINE L1 5953 6112 -179 2278 108 0 0 chr12 53142009 53142315 -90644140 + AluSx SINE Alu 2 307 -5 1117 172 83 40 chr12 53142315 53142471 -90643984 + L1MA8 LINE L1 6112 6291 0 2238 94 3 3 chr12 53142492 53142791 -90643664 - AluSg SINE Alu -11 299 1 1529 174 49 24 chr12 53142796 53142963 -90643492 - AluJb SINE Alu -8 294 116 189 0 0 0 chr12 53142963 53142984 -90643471 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1529 174 49 24 chr12 53142984 53143103 -90643352 - AluJb SINE Alu -186 116 1 244 287 79 20 chr12 53143433 53143534 -90642921 - MIR SINE MIR -68 140 34 503 250 113 0 chr12 53143677 53143837 -90642618 + L2 LINE L2 1530 1707 -1607 889 189 7 0 chr12 53143855 53144008 -90642447 - AluJb SINE Alu -25 287 134 1991 142 7 0 chr12 53144008 53144318 -90642137 - AluSq SINE Alu -1 312 1 1861 267 221 8 chr12 53144335 53145039 -90641416 + L2 LINE L2 1728 2281 -1032 1828 159 3 19 chr12 53145039 53145354 -90641101 - AluJb SINE Alu -2 310 1 1861 267 221 8 chr12 53145354 53145947 -90640508 + L2 LINE L2 2281 3312 -1 978 167 0 0 chr12 53145959 53146139 -90640316 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 439 340 31 0 chr12 53146847 53147006 -90639449 - MIR SINE MIR -50 212 49 188 297 47 0 chr12 53147444 53147508 -90638947 - MIR SINE MIR -163 99 33 1035 218 15 0 chr12 53147529 53147735 -90638720 - MER3 DNA MER1_type 0 209 1 2144 114 0 13 chr12 53147803 53148110 -90638345 - AluSq SINE Alu -9 304 2 222 274 123 0 chr12 53148672 53148745 -90637710 - L2 LINE L2 0 3272 3191 187 333 107 23 chr12 53151308 53151485 -90634970 + L2 LINE L2 2417 2608 -706 466 199 34 48 chr12 53152327 53152454 -90634001 - Charlie4 DNA MER1_type -3 1958 1832 2222 98 7 0 chr12 53152454 53152750 -90633705 + AluSp SINE Alu 1 298 -15 466 199 34 48 chr12 53152750 53152768 -90633687 - Charlie4 DNA MER1_type -129 1832 1815 415 278 243 0 chr12 53153299 53153472 -90632983 - MIR SINE MIR -16 246 32 183 80 0 0 chr12 53154045 53154070 -90632385 + (TCTCC)n Simple_repeat Simple_repeat 2 26 0 286 269 83 41 chr12 53154071 53154216 -90632239 + L2 LINE L2 2305 2455 -859 247 232 0 58 chr12 53155192 53155261 -90631194 + L2 LINE L2 3207 3271 -1 1918 112 10 37 chr12 53155268 53155562 -90630893 + AluSx SINE Alu 14 299 -13 804 156 0 8 chr12 53155792 53155914 -90630541 + FLAM_C SINE Alu 1 121 -22 331 302 86 10 chr12 53156100 53156234 -90630221 - MIR SINE MIR -62 146 44 224 287 21 43 chr12 53156544 53156638 -90629817 - MIR SINE MIR -67 195 104 222 302 0 0 chr12 53157932 53157995 -90628460 + G-rich Low_complexity Low_complexity 6 68 0 289 325 125 29 chr12 53158102 53158487 -90627968 - L2 LINE L2 -1 3271 2850 21 0 0 0 chr12 53160518 53160539 -90625916 + GC_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 53160574 53160632 -90625823 + GC_rich Low_complexity Low_complexity 1 58 0 422 228 0 91 chr12 53160776 53161031 -90625424 + C-rich Low_complexity Low_complexity 1 231 0 258 253 0 13 chr12 53161154 53161229 -90625226 + G-rich Low_complexity Low_complexity 3 76 0 21 57 0 0 chr12 53161299 53161334 -90625121 + GC_rich Low_complexity Low_complexity 1 35 0 408 292 39 15 chr12 53161718 53161848 -90624607 - L2 LINE L2 -3 3269 3137 288 256 256 16 chr12 53162502 53162623 -90623832 - MIR3 SINE MIR -9 199 50 376 304 12 41 chr12 53163712 53163883 -90622572 + GA-rich Low_complexity Low_complexity 2 167 0 315 284 37 18 chr12 53164547 53164656 -90621799 + L2 LINE L2 2949 3059 -213 2212 126 0 0 chr12 53165450 53165759 -90620696 + AluSx SINE Alu 1 309 -3 447 285 80 7 chr12 53165980 53166174 -90620281 + MIR SINE MIR 18 222 -40 321 228 186 49 chr12 53166412 53166514 -90619941 + FLAM_A SINE Alu 15 74 -58 296 198 11 44 chr12 53166517 53166608 -90619847 - L1ME4a LINE L1 -48 6073 5986 843 187 6 6 chr12 53166609 53166775 -90619680 + AluYa5 SINE Alu 131 296 -15 966 193 126 17 chr12 53167200 53167439 -90619016 - HsTC2 DNA Tc2 -115 1783 1519 2245 103 0 7 chr12 53167449 53167750 -90618705 + AluSx SINE Alu 1 299 -13 2050 105 0 10 chr12 53167753 53168048 -90618407 + AluSx SINE Alu 1 292 -20 1510 186 60 58 chr12 53168059 53168095 -90618360 - MLT1F1 LTR MaLR -6 561 527 1876 95 4 0 chr12 53168095 53168348 -90618107 + AluSp SINE Alu 1 254 -59 1510 186 60 58 chr12 53168348 53168692 -90617763 - MLT1F1 LTR MaLR -40 527 180 2003 121 3 29 chr12 53168713 53169028 -90617427 - AluSx SINE Alu -5 307 1 1012 99 0 0 chr12 53169030 53169161 -90617294 - AluSq/x SINE Alu -180 132 2 1365 149 4 4 chr12 53169207 53169435 -90617020 - AluJb SINE Alu -11 301 74 483 278 124 13 chr12 53169436 53169670 -90616785 + MLT1L LTR MaLR 193 452 -163 1122 202 40 86 chr12 53169675 53169717 -90616738 + L1ME2 LINE L1 5778 5820 -344 820 163 23 0 chr12 53169717 53169846 -90616609 + FLAM_C SINE Alu 2 133 0 1122 202 40 86 chr12 53169846 53169858 -90616597 + L1ME2 LINE L1 5820 5831 -333 2375 63 0 3 chr12 53169858 53170159 -90616296 + AluY SINE Alu 1 300 -11 1122 202 40 86 chr12 53170159 53170462 -90615993 + L1ME2 LINE L1 5831 6119 -45 1806 170 0 6 chr12 53170462 53170773 -90615682 + AluJb SINE Alu 1 309 -3 1122 202 40 86 chr12 53170773 53170809 -90615646 + L1ME2 LINE L1 6119 6155 -9 454 264 146 6 chr12 53170832 53171010 -90615445 + MLT1L LTR MaLR 403 605 -10 288 245 91 56 chr12 53171166 53171309 -90615146 + MIR SINE MIR 98 245 -17 774 218 10 63 chr12 53171628 53171756 -90614699 + MIR SINE MIR 64 178 -84 1977 138 3 10 chr12 53171756 53172034 -90614421 + AluSg SINE Alu 1 278 -32 279 0 0 0 chr12 53172034 53172065 -90614390 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 1977 138 3 10 chr12 53172065 53172098 -90614357 + AluSg SINE Alu 278 310 0 774 218 10 63 chr12 53172098 53172175 -90614280 + MIR SINE MIR 178 258 -4 26 30 0 0 chr12 53173463 53173496 -90612959 + GC_rich Low_complexity Low_complexity 1 33 0 209 277 138 53 chr12 53175420 53175608 -90610847 + L2 LINE L2 2554 2757 -557 1518 159 3 89 chr12 53175783 53176110 -90610345 + AluJb SINE Alu 1 299 -13 936 129 7 0 chr12 53176110 53176239 -90610216 - AluJo/FRAM SINE Alu -24 288 156 348 235 133 0 chr12 53176274 53176372 -90610083 + Charlie8 DNA MER1_type 126 236 -2181 1332 179 0 17 chr12 53176814 53177054 -90609401 - AluJo SINE Alu -23 289 54 192 280 183 0 chr12 53177863 53177956 -90608499 - MIR SINE MIR -73 189 80 21 104 0 0 chr12 53178547 53178624 -90607831 + GC_rich Low_complexity Low_complexity 1 77 0 569 288 176 26 chr12 53179150 53179859 -90606596 + L2 LINE L2 2470 3294 -19 266 297 42 34 chr12 53180059 53180177 -90606278 - MIR SINE MIR -32 230 112 214 222 0 0 chr12 53180907 53180952 -90605503 + MIR3 SINE MIR 112 156 -52 377 268 64 49 chr12 53181804 53181972 -90604483 + MIR SINE MIR 27 194 -63 295 260 62 0 chr12 53182142 53182238 -90604217 - MER112 DNA MER1_type -151 109 8 183 266 64 73 chr12 53182849 53182958 -90603497 - MIR3 SINE MIR -97 111 4 22 0 0 0 chr12 53183169 53183191 -90603264 + GC_rich Low_complexity Low_complexity 1 22 0 2054 132 0 7 chr12 53183852 53184162 -90602293 + AluSq SINE Alu 1 308 -5 1042 116 19 0 chr12 53184165 53184320 -90602135 + AluSg/x SINE Alu 134 291 -19 2131 115 7 0 chr12 53184724 53185029 -90601426 + AluSg SINE Alu 1 307 -3 279 143 0 0 chr12 53185157 53185199 -90601256 - Alu SINE Alu -257 42 1 198 204 20 0 chr12 53185249 53185298 -90601157 + L2 LINE L2 3264 3313 0 2334 50 0 0 chr12 53185460 53185764 -90600691 + AluY SINE Alu 2 305 0 797 241 6 0 chr12 53185837 53186011 -90600444 + MER5B DNA MER1_type 2 176 -2 2029 119 14 3 chr12 53186017 53186310 -90600145 + AluJb SINE Alu 1 296 -16 491 67 0 0 chr12 53186399 53186459 -90599996 - FLAM SINE Alu -22 121 62 202 211 0 28 chr12 53186459 53186530 -90599925 + (TG)n Simple_repeat Simple_repeat 2 70 0 265 283 58 72 chr12 53186533 53186756 -90599699 - L1MC/D LINE L1 -1916 5892 5673 806 139 0 44 chr12 53186776 53186913 -90599542 - FLAM_C SINE Alu -12 131 1 723 286 101 40 chr12 53186926 53187210 -90599245 - L1MC/D LINE L1 -2133 5675 5365 2288 92 3 16 chr12 53187210 53187526 -90598929 - AluSp SINE Alu -1 312 1 723 286 101 40 chr12 53187526 53187587 -90598868 - L1MC/D LINE L1 -2443 5365 5309 1593 153 17 51 chr12 53187588 53187926 -90598529 - AluSx SINE Alu 0 312 9 354 367 53 6 chr12 53187970 53188139 -90598316 + L1MEd LINE L1 2 178 -5941 267 363 93 26 chr12 53188233 53188520 -90597935 + L1MEd LINE L1 298 613 -5506 261 0 0 0 chr12 53188520 53188549 -90597906 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 267 363 93 26 chr12 53188549 53188605 -90597850 + L1MEd LINE L1 613 664 -5455 1442 147 151 11 chr12 53188660 53188925 -90597530 + AluJb SINE Alu 1 302 0 2367 68 3 3 chr12 53189017 53189325 -90597130 + AluSq SINE Alu 1 308 -5 302 238 134 79 chr12 53191221 53191385 -90595070 + MIR3 SINE MIR 36 208 0 274 109 91 0 chr12 53192333 53192388 -90594067 + L2 LINE L2 3197 3256 -16 1122 190 50 50 chr12 53192390 53192648 -90593807 + MIR SINE MIR 1 258 -4 436 141 0 0 chr12 53193619 53193690 -90592765 + AluSp/q SINE Alu 225 295 -18 2392 227 101 34 chr12 53193700 53193921 -90592534 - L1MDa LINE L1 -5128 1412 1207 2036 128 7 7 chr12 53193921 53194227 -90592228 - AluSq SINE Alu -7 306 1 2392 227 101 34 chr12 53194227 53194871 -90591584 - L1MDa LINE L1 -5333 1207 239 1099 110 0 0 chr12 53195267 53195421 -90591034 + AluSp SINE Alu 152 305 -8 344 287 19 37 chr12 53195432 53195598 -90590857 + L1ME1 LINE L1 5771 5916 -250 317 71 0 0 chr12 53195781 53195823 -90590632 + Alu SINE Alu 1 42 -258 1917 119 3 32 chr12 53195827 53195975 -90590480 - THE1C LTR MaLR -73 302 166 2051 107 20 13 chr12 53195975 53196275 -90590180 + AluSx SINE Alu 2 303 -9 1917 119 3 32 chr12 53196275 53196437 -90590018 - THE1C LTR MaLR -209 166 1 547 171 11 35 chr12 53196437 53196595 -90589860 - MLT1A1 LTR MaLR -173 201 2 770 317 88 38 chr12 53196596 53197022 -90589433 + L1MC4a LINE L1 4512 4915 -1231 1872 156 40 79 chr12 53197022 53197426 -90589029 - MLT1B LTR MaLR -2 388 1 770 317 88 38 chr12 53197426 53198239 -90588216 + L1MC4a LINE L1 4915 5397 -749 2837 119 18 104 chr12 53198294 53198892 -90587563 + LTR10A LTR ERV1 1 547 -62 297 238 0 9 chr12 53198920 53199014 -90587441 - MLT1J LTR MaLR -269 180 72 2262 97 7 0 chr12 53199330 53199640 -90586815 + AluSp SINE Alu 1 312 -1 1616 158 16 44 chr12 53200176 53200492 -90585963 + AluJo SINE Alu 1 307 -5 31 96 0 0 chr12 53200731 53200825 -90585630 + AT_rich Low_complexity Low_complexity 1 94 0 2239 109 0 0 chr12 53200953 53201264 -90585191 - AluSq SINE Alu -2 311 1 927 167 0 0 chr12 53201268 53201424 -90585031 - AluJb SINE Alu -21 291 136 198 272 78 39 chr12 53204081 53204184 -90582271 + MIR3 SINE MIR 98 204 -4 686 252 16 72 chr12 53205129 53205379 -90581076 + L1MC4a LINE L1 5679 5914 -1894 987 212 75 75 chr12 53205384 53205851 -90580604 - LTR37B LTR ERV1 0 468 2 407 263 110 51 chr12 53205866 53206102 -90580353 - MIR SINE MIR -11 251 2 1571 122 24 258 chr12 53206154 53206183 -90580272 - L1MC3 LINE L1 -187 7598 7564 2221 122 0 0 chr12 53206183 53206494 -90579961 - AluSx SINE Alu -1 311 1 1571 122 24 258 chr12 53206494 53206710 -90579745 - L1MC3 LINE L1 -221 7564 7470 899 132 0 0 chr12 53206710 53206839 -90579616 - AluJb SINE Alu -183 129 1 1571 122 24 258 chr12 53206839 53207180 -90579275 - L1MC3 LINE L1 -315 7470 7051 255 246 15 15 chr12 53207365 53207430 -90579025 + MIR SINE MIR 86 150 -112 483 312 43 0 chr12 53207713 53207851 -90578604 + MIR SINE MIR 84 227 -35 1752 164 3 7 chr12 53207879 53208166 -90578289 - AluJo SINE Alu -26 286 1 1876 92 114 11 chr12 53208176 53208457 -90577998 - AluSg SINE Alu 0 310 1 495 254 28 18 chr12 53208466 53208619 -90577836 - MIR SINE MIR -46 162 11 250 217 0 98 chr12 53209184 53209276 -90577179 + MIR SINE MIR 10 92 -116 1855 113 4 26 chr12 53211732 53211997 -90574458 + AluJo SINE Alu 42 300 -12 195 333 0 0 chr12 53212576 53212630 -90573825 - MIR SINE MIR -139 69 16 353 224 9 47 chr12 53213116 53213223 -90573232 - MIR3 SINE MIR 0 208 106 2085 89 0 62 chr12 53213524 53213863 -90572592 + AluSx SINE Alu 1 320 0 505 198 72 0 chr12 53213977 53214088 -90572367 - MER45A DNA AcHobo 0 178 60 2102 214 106 37 chr12 53215042 53215702 -90570753 + L1MDa LINE L1 226 1208 -5332 2135 131 7 7 chr12 53215702 53216008 -90570447 + AluSq SINE Alu 1 306 -7 2102 214 106 37 chr12 53216008 53216184 -90570271 + L1MDa LINE L1 1208 1370 -5170 645 220 9 44 chr12 53216627 53216854 -90569601 + L1MDa LINE L1 1194 1412 -5128 1849 132 10 10 chr12 53216864 53217159 -90569296 - AluSq SINE Alu -18 295 1 2867 150 73 19 chr12 53217159 53217732 -90568723 - Tigger3b DNA MER2_type -626 605 2 2183 215 43 73 chr12 53217732 53217844 -90568611 + L1M4 LINE L1 3745 3859 -2287 2466 90 3 0 chr12 53217844 53218154 -90568301 + AluSp SINE Alu 1 311 -2 2183 215 43 73 chr12 53218154 53218832 -90567623 + L1M4 LINE L1 3859 4511 -1635 506 167 177 0 chr12 53218838 53218934 -90567521 - MER45A DNA AcHobo -65 113 1 2011 117 43 0 chr12 53218961 53219242 -90567213 + AluSx SINE Alu 3 295 -17 479 244 94 12 chr12 53219394 53219554 -90566901 - L3b LINE CR1 -192 1391 1219 471 238 75 79 chr12 53220473 53220725 -90565730 - MIR SINE MIR -5 257 7 221 232 283 0 chr12 53222228 53222327 -90564128 + MIR3 SINE MIR 30 156 -52 346 289 134 0 chr12 53222797 53222946 -90563509 - MIR SINE MIR -3 259 91 616 237 127 22 chr12 53222990 53223218 -90563237 - MIR SINE MIR -10 252 1 1376 130 33 9 chr12 53223631 53223846 -90562609 + AluJo SINE Alu 88 307 -5 275 258 290 0 chr12 53224031 53224176 -90562279 + MIR SINE MIR 77 262 0 373 264 49 49 chr12 53224681 53224844 -90561611 + MER5A DNA MER1_type 14 176 -13 238 318 28 19 chr12 53225470 53225577 -90560878 - L3b LINE CR1 -187 1396 1289 427 292 25 12 chr12 53225928 53226089 -90560366 + MIR3 SINE MIR 1 163 -45 477 0 0 0 chr12 53229044 53229097 -90557358 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 1861 166 18 0 chr12 53229097 53229376 -90557079 - AluJo SINE Alu -28 284 1 296 234 78 0 chr12 53230807 53230884 -90555571 - MIR SINE MIR 0 262 180 614 201 140 17 chr12 53230904 53231028 -90555427 + MIR SINE MIR 4 158 -104 2318 109 0 19 chr12 53231028 53231341 -90555114 + AluSx SINE Alu 5 311 -1 614 201 140 17 chr12 53231341 53231395 -90555060 + MIR SINE MIR 158 204 -58 308 256 214 0 chr12 53231453 53231570 -90554885 - MIR SINE MIR -111 151 10 897 242 83 0 chr12 53232601 53232841 -90553614 + MIR SINE MIR 3 262 0 884 224 73 31 chr12 53232893 53233149 -90553306 + MIR SINE MIR 2 260 -2 477 0 0 0 chr12 53233696 53233749 -90552706 + (TG)n Simple_repeat Simple_repeat 2 54 0 1718 158 14 21 chr12 53233753 53234037 -90552418 - AluJo SINE Alu -30 282 1 205 150 50 33 chr12 53234044 53234104 -90552351 + T-rich Low_complexity Low_complexity 2 62 0 486 292 25 0 chr12 53234213 53234333 -90552122 + L2 LINE L2 3150 3272 0 212 344 10 0 chr12 53234340 53234436 -90552019 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 322 269 11 40 chr12 53234787 53235081 -90551374 + CT-rich Low_complexity Low_complexity 1 285 0 2188 141 3 0 chr12 53236065 53236377 -90550078 - AluSq SINE Alu 0 313 1 182 262 0 0 chr12 53237660 53237702 -90548753 + L2 LINE L2 3264 3305 -8 2013 130 0 4 chr12 53241667 53241973 -90544482 + AluSx SINE Alu 10 314 0 180 111 0 0 chr12 53241993 53242020 -90544435 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1028 202 5 54 chr12 53242060 53242283 -90544172 - AluJo SINE Alu -100 212 1 304 224 13 13 chr12 53242289 53242365 -90544090 + L1ME2 LINE L1 4616 4691 -1455 22 35 0 0 chr12 53242450 53242479 -90543976 + AT_rich Low_complexity Low_complexity 1 29 0 435 196 224 0 chr12 53242480 53242587 -90543868 + FLAM_C SINE Alu 2 132 -11 591 257 91 0 chr12 53242592 53242779 -90543676 - L1MC/D LINE L1 -2006 5802 5599 2183 103 4 0 chr12 53242913 53243226 -90543229 + AluSq SINE Alu 1 314 0 1990 146 9 35 chr12 53243236 53243551 -90542904 + AluJo SINE Alu 3 309 -3 716 314 64 55 chr12 53243551 53243618 -90542837 + L1ME2 LINE L1 4821 4886 -1280 2365 116 0 0 chr12 53243618 53243920 -90542535 + AluSx SINE Alu 1 302 -10 842 173 0 6 chr12 53243927 53244095 -90542360 + L1MB8 LINE L1 6010 6176 -2 716 314 64 55 chr12 53244095 53244317 -90542138 + L1ME2 LINE L1 4891 5109 -1057 2290 79 7 3 chr12 53244317 53244609 -90541846 + AluY SINE Alu 1 293 -18 716 314 64 55 chr12 53244609 53245130 -90541325 + L1ME2 LINE L1 5109 5642 -524 1088 129 20 50 chr12 53245131 53245332 -90541123 + Tigger2a DNA MER2_type 1 195 -239 2210 101 0 10 chr12 53245333 53245621 -90540834 + AluSx SINE Alu 1 285 -27 421 255 3 20 chr12 53245621 53245723 -90540732 + L1MC4 LINE L1 6614 6703 -1339 399 264 0 22 chr12 53245642 53245733 -90540722 - L1MC4 LINE L1 -1339 6703 6615 * 1409 126 54 0 chr12 53245752 53245991 -90540464 + Tigger2a DNA MER2_type 191 442 -2 303 328 105 15 chr12 53246003 53246260 -90540195 + L1ME2 LINE L1 5655 5937 -225 230 244 144 44 chr12 53246522 53246612 -90539843 + MIR SINE MIR 87 185 -77 2165 121 0 0 chr12 53247703 53248015 -90538440 + AluSx SINE Alu 1 312 0 403 295 0 16 chr12 53248293 53248422 -90538033 + MIR SINE MIR 28 154 -108 216 0 0 0 chr12 53248928 53248952 -90537503 + (A)n Simple_repeat Simple_repeat 1 24 0 1539 138 42 77 chr12 53248961 53249097 -90537358 + AluJb SINE Alu 1 140 -172 2292 123 0 0 chr12 53249097 53249406 -90537049 + AluSg SINE Alu 1 309 -1 1539 138 42 77 chr12 53249406 53249581 -90536874 + AluJb SINE Alu 140 301 -11 430 309 172 0 chr12 53249985 53250189 -90536266 - L1MC4 LINE L1 -1897 5911 5673 295 336 26 9 chr12 53250231 53250344 -90536111 + MIR SINE MIR 36 150 -112 592 226 68 0 chr12 53250948 53251094 -90535361 - MIR SINE MIR -11 251 96 675 288 22 16 chr12 53251182 53251366 -90535089 - MIR SINE MIR -71 191 7 213 219 0 0 chr12 53251492 53251533 -90534922 + (CA)n Simple_repeat Simple_repeat 2 42 0 1466 137 9 18 chr12 53251917 53252144 -90534311 - AluJo SINE Alu -1 311 87 2407 87 0 3 chr12 53252213 53252511 -90533944 - AluSx SINE Alu -15 297 1 2473 87 3 0 chr12 53252971 53253271 -90533184 - AluSp SINE Alu -10 303 3 294 125 0 0 chr12 53254234 53254282 -90532173 + (CA)n Simple_repeat Simple_repeat 1 48 0 339 256 116 25 chr12 53254591 53254712 -90531743 + L2 LINE L2 3141 3272 0 535 256 38 0 chr12 53255634 53255767 -90530688 + MIR SINE MIR 79 216 -46 342 236 45 22 chr12 53255810 53255899 -90530556 - MIR SINE MIR -71 191 101 351 272 47 0 chr12 53255979 53256086 -90530369 + MIR3 SINE MIR 67 178 -30 348 273 27 27 chr12 53257432 53257572 -90528883 - L1MEc LINE L1 -3933 2196 2094 1279 147 40 0 chr12 53257572 53257797 -90528658 - MER46A DNA MER2_type -1 235 2 348 273 27 27 chr12 53257797 53257935 -90528520 - L1MEc LINE L1 -4034 2095 1958 499 341 17 37 chr12 53258022 53258321 -90528134 - L1MEc LINE L1 -5396 723 431 372 181 0 14 chr12 53258338 53258410 -90528045 - AluS SINE Alu 0 301 231 2343 102 0 31 chr12 53258467 53258790 -90527665 - AluSq SINE Alu 0 313 1 248 306 32 70 chr12 53258794 53258951 -90527504 - L1MEc LINE L1 -5725 394 244 449 314 246 23 chr12 53259132 53259599 -90526856 + L2 LINE L2 1749 2110 -1204 2131 95 46 0 chr12 53259599 53259883 -90526572 - AluSx SINE Alu -15 297 1 449 314 246 23 chr12 53259883 53260167 -90526288 + L2 LINE L2 2110 2668 -646 211 336 172 0 chr12 53260680 53260808 -90525647 + L2 LINE L2 3164 3313 0 2488 82 0 22 chr12 53261083 53261400 -90525055 + AluSg SINE Alu 1 310 0 241 257 86 76 chr12 53261756 53261861 -90524594 + MIR SINE MIR 82 187 -75 626 250 24 28 chr12 53261873 53262071 -90524384 - MIR SINE MIR -1 261 63 1608 190 83 36 chr12 53262318 53262729 -90523726 + MLT1C LTR MaLR 6 435 -32 354 294 38 11 chr12 53263059 53263190 -90523265 - MIR SINE MIR -54 154 20 1049 237 201 8 chr12 53263273 53263800 -90522655 - L1ME4a LINE L1 -2 6119 5491 209 291 70 32 chr12 53263851 53264009 -90522446 - L2 LINE L2 -619 2695 2532 32 0 0 0 chr12 53264185 53264217 -90522238 + GC_rich Low_complexity Low_complexity 1 32 0 225 273 23 23 chr12 53264219 53264347 -90522108 + G-rich Low_complexity Low_complexity 1 128 0 207 69 0 0 chr12 53264360 53264389 -90522066 + (CGG)n Simple_repeat Simple_repeat 2 30 0 336 202 66 63 chr12 53267291 53267441 -90519014 + MIR SINE MIR 36 181 -58 390 253 78 42 chr12 53269011 53269177 -90517278 - L2 LINE L2 -36 3277 3106 262 191 44 29 chr12 53269188 53269256 -90517199 + MIR SINE MIR 83 151 -111 730 129 45 77 chr12 53269276 53269409 -90517046 + MER82 DNA MER2_type 31 160 -493 1636 162 16 32 chr12 53269409 53269717 -90516738 - AluJb SINE Alu -9 303 1 730 129 45 77 chr12 53269717 53269738 -90516717 + MER82 DNA MER2_type 160 180 -473 718 402 44 76 chr12 53269744 53270060 -90516395 - AluYb8 SINE Alu -2 306 1 1134 223 47 64 chr12 53270143 53270274 -90516181 - L1MC5 LINE L1 -275 7686 7554 1836 164 0 0 chr12 53270274 53270573 -90515882 + AluJo SINE Alu 5 303 -9 1134 223 47 64 chr12 53270573 53270863 -90515592 - L1MC5 LINE L1 -407 7554 7272 324 280 45 51 chr12 53271686 53271843 -90514612 - L1ME4a LINE L1 0 6121 5966 3025 186 50 27 chr12 53271976 53272719 -90513736 + L1MB4 LINE L1 4579 5337 -818 824 188 0 0 chr12 53272722 53272866 -90513589 + FRAM SINE Alu 10 153 -23 398 173 81 24 chr12 53272885 53273480 -90512975 + L1MB4 LINE L1 5317 6071 -109 1925 115 29 4 chr12 53273480 53273792 -90512663 + AluSx SINE Alu 1 319 0 398 173 81 24 chr12 53273792 53273909 -90512546 + L1MB4 LINE L1 6071 6180 0 262 279 0 15 chr12 53274067 53274135 -90512320 + L2 LINE L2 3186 3252 -20 195 308 166 40 chr12 53275697 53275999 -90510456 - L2 LINE L2 0 3272 2933 545 272 52 35 chr12 53276328 53276501 -90509954 + MIR SINE MIR 87 262 0 1688 153 7 14 chr12 53276575 53276869 -90509586 - AluJo SINE Alu -20 292 1 1387 234 144 44 chr12 53277397 53277896 -90508559 - MLT1E3 LTR MaLR -49 575 27 518 273 0 43 chr12 53277951 53278090 -90508365 + L2 LINE L2 3171 3303 -10 1827 125 36 100 chr12 53278104 53278340 -90508115 + MER1B DNA MER1_type 1 208 -2502 1838 83 15 23 chr12 53278340 53278605 -90507850 - AluSx SINE Alu -6 306 44 1827 125 36 100 chr12 53278605 53278728 -90507727 + MER1B DNA MER1_type 208 337 0 2097 191 50 19 chr12 53278886 53279304 -90507151 - MER82 DNA MER2_type -54 599 169 1463 153 4 0 chr12 53279305 53279540 -90506915 + AluJo SINE Alu 1 236 -76 1759 103 16 0 chr12 53279541 53279794 -90506661 - AluSg SINE Alu -3 307 51 377 274 34 17 chr12 53280646 53280763 -90505692 - MIR3 SINE MIR -49 159 41 565 172 0 0 chr12 53283463 53283550 -90502905 - MER8 DNA MER2_type -131 108 22 216 237 34 0 chr12 53283731 53283790 -90502665 - MIR SINE MIR -65 143 83 2404 69 0 0 chr12 53284840 53285146 -90501309 + AluY SINE Alu 1 306 -5 2292 92 0 0 chr12 53285161 53285464 -90500991 + AluSq SINE Alu 6 308 -5 709 307 32 20 chr12 53285516 53285767 -90500688 - MIR SINE MIR -3 259 6 2046 109 10 3 chr12 53285832 53286125 -90500330 + AluSq SINE Alu 1 295 -18 1623 234 77 61 chr12 53286337 53286651 -90499804 + MLT1G1 LTR MaLR 1 330 -265 1012 167 107 9 chr12 53286651 53286866 -90499589 + MER46A DNA MER2_type 1 236 0 1623 234 77 61 chr12 53286866 53287137 -90499318 + MLT1G1 LTR MaLR 330 595 0 863 193 0 6 chr12 53287622 53287783 -90498672 + FAM SINE Alu 6 165 -20 209 336 82 39 chr12 53288140 53288348 -90498107 + MIR SINE MIR 4 220 -42 644 262 0 27 chr12 53289705 53289854 -90496601 - MIR3 SINE MIR -22 186 42 254 360 10 50 chr12 53289952 53290005 -90496450 - MIR SINE MIR -7 255 206 860 148 0 0 chr12 53290005 53290127 -90496328 + FLAM_A SINE Alu 1 122 -11 254 360 10 50 chr12 53290127 53290173 -90496282 - MIR SINE MIR -56 206 160 1514 158 115 14 chr12 53290173 53290452 -90496003 + MER7A DNA MER2_type 1 305 -41 360 253 151 9 chr12 53290453 53290567 -90495888 - MIR SINE MIR -57 151 25 276 226 0 0 chr12 53292475 53292528 -90493927 - MIR SINE MIR -52 210 158 283 325 0 0 chr12 53292625 53292702 -90493753 - L2 LINE L2 -218 3054 2978 1435 158 4 0 chr12 53295159 53295430 -90491025 - AluSx SINE Alu 0 319 48 1069 179 16 40 chr12 53295488 53295740 -90490715 - AluJb SINE Alu -4 308 63 2470 50 0 7 chr12 53296428 53296730 -90489725 + AluY SINE Alu 1 300 -11 271 301 9 106 chr12 53296759 53296809 -90489646 - L2 LINE L2 -214 3058 3005 1790 101 8 8 chr12 53296809 53297066 -90489389 + AluSq SINE Alu 49 305 -8 2175 99 0 7 chr12 53297066 53297368 -90489087 + AluSx SINE Alu 1 300 -12 271 301 9 106 chr12 53297368 53297542 -90488913 - L2 LINE L2 -265 3007 2855 942 268 28 20 chr12 53297875 53298125 -90488330 + MIR SINE MIR 5 256 -6 2158 87 0 53 chr12 53299434 53299756 -90486699 + AluSx SINE Alu 1 305 -7 446 274 92 12 chr12 53300261 53300425 -90486030 - L2 LINE L2 0 3272 3096 839 268 47 0 chr12 53302850 53303040 -90483415 - MIR SINE MIR -58 204 6 2178 88 0 3 chr12 53304148 53304443 -90482012 - AluSq SINE Alu -19 294 1 878 65 0 0 chr12 53305540 53305647 -90480808 + U6 snRNA snRNA 1 107 0 1710 70 22 0 chr12 53305649 53305879 -90480576 + L1MA2 LINE L1 6070 6304 0 2247 81 3 3 chr12 53306071 53306378 -90480077 + AluSc SINE Alu 1 307 -2 684 288 15 25 chr12 53306475 53306673 -90479782 - MIR SINE MIR -53 209 14 732 200 15 0 chr12 53306721 53306851 -90479604 + FLAM_C SINE Alu 1 132 -1 1362 87 49 0 chr12 53306866 53307051 -90479404 + AluSq SINE Alu 1 194 -119 1040 159 20 5 chr12 53307169 53307364 -90479091 - AluY SINE Alu -13 298 101 1745 138 4 0 chr12 53307483 53307751 -90478704 - AluSx SINE Alu -43 269 1 246 252 189 18 chr12 53307751 53307862 -90478593 + MIR SINE MIR 101 230 -32 185 247 174 53 chr12 53307826 53308016 -90478439 + L2 LINE L2 2765 2977 -337 * 1540 160 7 40 chr12 53308044 53308344 -90478111 - AluJo SINE Alu -18 294 5 327 123 0 55 chr12 53308398 53308471 -90477984 + L1MC5 LINE L1 7614 7682 -279 788 98 9 9 chr12 53308557 53308669 -90477786 + AluY SINE Alu 2 113 -198 207 0 0 0 chr12 53308803 53308826 -90477629 + (A)n Simple_repeat Simple_repeat 1 23 0 2000 105 4 0 chr12 53308851 53309127 -90477328 - AluSq SINE Alu -36 277 1 2018 71 7 58 chr12 53309138 53309446 -90477009 - AluSx SINE Alu -13 299 8 1368 229 13 7 chr12 53309446 53309751 -90476704 + MLT2B1 LTR ERVL 5 311 -209 379 120 0 0 chr12 53309991 53310041 -90476414 + AluSp/q SINE Alu 228 277 -26 1844 139 13 10 chr12 53310066 53310369 -90476086 - AluJb SINE Alu -7 305 2 701 245 93 23 chr12 53310374 53310676 -90475779 - L1MC5 LINE L1 -315 7646 7324 1009 199 82 94 chr12 53310831 53311148 -90475307 - L1MC5 LINE L1 -866 7095 6783 2002 136 0 0 chr12 53311148 53311456 -90474999 - AluSx SINE Alu -4 308 1 1009 199 82 94 chr12 53311456 53311551 -90474904 - L1MC5 LINE L1 -1178 6783 6688 1729 158 17 7 chr12 53311977 53312268 -90474187 + AluJo SINE Alu 1 294 -18 1039 182 78 0 chr12 53312746 53312988 -90473467 - L1MA9 LINE L1 0 6312 6052 2333 80 0 16 chr12 53313239 53313552 -90472903 + AluSc SINE Alu 2 309 0 301 274 147 0 chr12 53315655 53315750 -90470705 - L2 LINE L2 -3 3310 3202 443 319 299 7 chr12 53317322 53317625 -90468830 - L3 LINE CR1 -2 1575 1362 774 301 35 16 chr12 53317625 53317881 -90468574 - MIR SINE MIR 0 262 2 443 319 299 7 chr12 53317881 53318249 -90468206 - L3 LINE CR1 -215 1362 708 2238 77 37 0 chr12 53318384 53318682 -90467773 - AluSq SINE Alu -2 311 3 640 233 8 0 chr12 53318685 53318818 -90467637 - AluJo SINE Alu -178 134 1 1419 165 129 12 chr12 53319383 53319723 -90466732 - MLT2D LTR ERVL -2 412 33 1250 123 18 64 chr12 53319934 53320153 -90466302 + AluSg/x SINE Alu 99 307 -5 2319 110 0 0 chr12 53320841 53321151 -90465304 + AluSx SINE Alu 1 310 -2 1644 191 31 0 chr12 53321179 53321498 -90464957 - MLT1A1 LTR MaLR -36 329 1 226 308 37 37 chr12 53321498 53321605 -90464850 - L2 LINE L2 -570 2744 2638 2356 87 0 3 chr12 53321608 53321918 -90464537 + AluY SINE Alu 1 309 -2 2239 104 3 0 chr12 53321930 53322237 -90464218 + AluSq SINE Alu 1 308 -5 311 238 134 79 chr12 53324133 53324297 -90462158 + MIR3 SINE MIR 36 208 0 279 109 91 0 chr12 53325245 53325300 -90461155 + L2 LINE L2 3197 3256 -16 1133 190 50 50 chr12 53325302 53325560 -90460895 + MIR SINE MIR 1 258 -4 572 185 208 22 chr12 53329582 53329760 -90456695 + MER58C DNA MER1_type 4 214 -1 824 126 0 24 chr12 53331361 53331488 -90454967 - FRAM SINE Alu -15 161 38 1572 156 107 91 chr12 53331670 53332019 -90454436 - MSTB2 LTR MaLR 0 457 98 2289 83 0 0 chr12 53332019 53332309 -90454146 - AluSq SINE Alu -23 290 1 1572 156 107 91 chr12 53332309 53332409 -90454046 - MSTB2 LTR MaLR -359 98 1 180 291 118 24 chr12 53332495 53332622 -90453833 - MIR3 SINE MIR -54 154 16 2738 10 0 0 chr12 53332828 53333132 -90453323 - AluY SINE Alu -7 304 1 295 307 86 43 chr12 53334076 53334239 -90452216 - MIR SINE MIR -6 256 87 202 128 26 0 chr12 53334648 53334687 -90451768 + (CCG)n Simple_repeat Simple_repeat 1 40 0 24 85 0 0 chr12 53334689 53334748 -90451707 + GC_rich Low_complexity Low_complexity 1 59 0 31 44 0 0 chr12 53334772 53334817 -90451638 + GC_rich Low_complexity Low_complexity 1 45 0 2265 95 0 0 chr12 53336074 53336368 -90450087 - AluSx SINE Alu -18 294 1 260 263 271 45 chr12 53336382 53336758 -90449697 + L2 LINE L2 2831 3291 -22 310 229 43 0 chr12 53336816 53336886 -90449569 - MIR SINE MIR -100 108 36 427 352 13 6 chr12 53336997 53337156 -90449299 + L2 LINE L2 2638 2797 -517 731 345 92 25 chr12 53337309 53337576 -90448879 + L2 LINE L2 2804 3052 -261 2395 75 0 3 chr12 53337576 53337883 -90448572 - AluY SINE Alu -5 306 1 731 345 92 25 chr12 53337883 53337916 -90448539 + L2 LINE L2 3052 3081 -232 1889 104 97 0 chr12 53337916 53338195 -90448260 - AluSq SINE Alu -4 309 4 731 345 92 25 chr12 53338195 53338371 -90448084 + L2 LINE L2 3081 3313 0 2269 106 0 0 chr12 53339461 53339763 -90446692 + AluSx SINE Alu 1 302 -10 234 301 258 12 chr12 53339784 53339947 -90446508 - MIR SINE MIR -29 233 31 223 329 76 55 chr12 53340263 53340500 -90445955 + L3b LINE CR1 1218 1459 -124 36 0 0 0 chr12 53341150 53341186 -90445269 + AT_rich Low_complexity Low_complexity 1 36 0 325 104 0 0 chr12 53341205 53341253 -90445202 + 7SLRNA srpRNA srpRNA 127 174 -146 2088 118 20 0 chr12 53341739 53342044 -90444411 + AluSx SINE Alu 1 311 -1 1707 150 33 0 chr12 53342069 53342342 -90444113 - AluJo SINE Alu -30 282 1 274 236 28 0 chr12 53342342 53342414 -90444041 - MER5B DNA MER1_type -74 104 31 238 308 96 0 chr12 53343733 53343837 -90442618 + MIR SINE MIR 30 143 -65 1482 155 50 32 chr12 53344198 53344522 -90441933 + AluJo SINE Alu 31 359 0 418 280 19 64 chr12 53344522 53344679 -90441776 + MIR SINE MIR 33 182 -80 522 308 117 22 chr12 53344786 53344817 -90441638 + L2 LINE L2 2818 2845 -468 2040 97 13 7 chr12 53344817 53345115 -90441340 - AluSx SINE Alu -12 300 1 522 308 117 22 chr12 53345115 53345535 -90440920 + L2 LINE L2 2845 3312 -1 777 244 113 5 chr12 53346188 53346409 -90440046 - MIR SINE MIR 0 262 18 282 306 18 27 chr12 53346419 53346530 -90439925 - MIR SINE MIR -82 180 71 2249 129 0 0 chr12 53347674 53347985 -90438470 + AluJb SINE Alu 1 311 -1 2288 95 0 0 chr12 53348044 53348348 -90438107 + AluSc SINE Alu 1 304 -5 2363 97 0 0 chr12 53348374 53348683 -90437772 + AluSg1 SINE Alu 1 309 0 1966 155 7 0 chr12 53349158 53349462 -90436993 + AluJb SINE Alu 1 306 -6 201 303 61 0 chr12 53349994 53350060 -90436395 + MIR SINE MIR 59 128 -80 563 264 86 64 chr12 53350071 53350179 -90436276 + MIR SINE MIR 6 110 -152 2179 125 0 0 chr12 53350179 53350491 -90435964 - AluSx SINE Alu 0 312 1 563 264 86 64 chr12 53350491 53350602 -90435853 + MIR SINE MIR 110 230 -32 189 247 174 53 chr12 53350566 53350756 -90435699 + L2 LINE L2 2765 2977 -337 * 1602 158 7 40 chr12 53350784 53351081 -90435374 - AluJo SINE Alu -18 294 8 1703 150 55 7 chr12 53351081 53351524 -90434931 + MLT2B1 LTR ERVL 5 519 -1 236 299 45 0 chr12 53351558 53351625 -90434830 + L2 LINE L2 3134 3203 -69 23 54 0 0 chr12 53352156 53352193 -90434262 + GC_rich Low_complexity Low_complexity 1 37 0 240 181 0 198 chr12 53353560 53353676 -90432779 + MIR3 SINE MIR 8 100 -108 615 281 30 18 chr12 53353883 53354050 -90432405 - MIR SINE MIR -31 231 63 379 270 152 22 chr12 53355400 53355578 -90430877 - MIR SINE MIR -13 249 49 326 212 11 73 chr12 53356127 53356306 -90430149 + G-rich Low_complexity Low_complexity 1 168 0 2369 72 0 0 chr12 53357061 53357354 -90429101 - AluSg SINE Alu -16 294 2 535 369 76 25 chr12 53357376 53357847 -90428608 + L3 LINE CR1 372 866 -711 994 214 44 18 chr12 53358000 53358229 -90428226 + MIR SINE MIR 28 262 0 296 283 17 81 chr12 53358388 53358561 -90427894 + L3 LINE CR1 1279 1440 -137 257 316 319 6 chr12 53358619 53358980 -90427475 - L2 LINE L2 -9 3304 2831 572 251 66 43 chr12 53360117 53360328 -90426127 - MIR SINE MIR -8 254 39 386 282 26 8 chr12 53361501 53361618 -90424837 - MIR3 SINE MIR -49 159 41 511 172 0 0 chr12 53364317 53364404 -90422051 - MER8 DNA MER2_type -131 108 22 226 277 31 0 chr12 53364579 53364644 -90421811 - MIR SINE MIR -114 148 82 1563 77 0 24 chr12 53365694 53365903 -90420552 + AluY SINE Alu 1 204 -107 2315 76 23 0 chr12 53366865 53367167 -90419288 + AluY SINE Alu 1 309 -2 2328 62 3 3 chr12 53367305 53367596 -90418859 + AluY SINE Alu 1 291 -20 301 320 68 20 chr12 53367649 53367796 -90418659 + MIR3 SINE MIR 3 156 -52 1013 175 143 42 chr12 53368113 53368330 -90418125 + MER8 DNA MER2_type 1 239 0 855 217 24 0 chr12 53368505 53368671 -90417784 + AluJb SINE Alu 137 306 -6 498 227 49 55 chr12 53369377 53369540 -90416915 + MIR3 SINE MIR 38 199 -9 369 0 0 0 chr12 53371260 53371301 -90415154 + (TG)n Simple_repeat Simple_repeat 1 41 0 249 83 0 0 chr12 53371301 53371337 -90415118 + (GA)n Simple_repeat Simple_repeat 2 37 0 272 229 0 0 chr12 53373578 53373648 -90412807 + CT-rich Low_complexity Low_complexity 1 70 0 332 356 96 14 chr12 53375876 53376022 -90410433 - MER91A DNA MER1_type -33 163 6 467 223 61 7 chr12 53376850 53376998 -90409457 - L1ME3A LINE L1 -41 6129 5974 25 0 0 0 chr12 53376999 53377024 -90409431 + AT_rich Low_complexity Low_complexity 1 25 0 819 129 0 9 chr12 53377024 53377140 -90409315 - FLAM_C SINE Alu -28 115 1 318 205 12 60 chr12 53377148 53377231 -90409224 - L1ME3A LINE L1 -200 5970 5892 379 291 102 25 chr12 53377386 53377582 -90408873 + MIR SINE MIR 2 212 -50 25 31 0 0 chr12 53378473 53378505 -90407950 + AT_rich Low_complexity Low_complexity 1 32 0 369 227 17 84 chr12 53378639 53378758 -90407697 + MIR SINE MIR 117 227 -35 228 348 118 0 chr12 53378883 53379018 -90407437 + MIR SINE MIR 110 260 -2 482 216 45 15 chr12 53379207 53379341 -90407114 - MER5A DNA MER1_type -48 141 4 269 286 22 11 chr12 53379898 53379989 -90406466 + MIR3 SINE MIR 67 158 -50 1024 269 32 0 chr12 53380317 53380570 -90405885 + MIR SINE MIR 2 262 0 303 296 0 0 chr12 53380569 53380650 -90405805 - MIR SINE MIR -67 141 61 * 207 156 0 0 chr12 53380772 53380804 -90405651 + (CCCCG)n Simple_repeat Simple_repeat 2 33 0 180 152 0 0 chr12 53382890 53382923 -90403532 + A-rich Low_complexity Low_complexity 1 33 0 2154 117 3 0 chr12 53383886 53384195 -90402260 - AluSx SINE Alu -2 310 1 226 328 61 57 chr12 53384201 53384448 -90402007 + L2 LINE L2 3025 3272 0 1098 225 117 72 chr12 53384787 53384893 -90401562 - MLT2B1 LTR ERVL 0 520 420 198 0 0 0 chr12 53384893 53384915 -90401540 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 2189 89 4 0 chr12 53384915 53385195 -90401260 - AluSp SINE Alu -32 281 1 1098 225 117 72 chr12 53385195 53385585 -90400870 - MLT2B1 LTR ERVL -99 421 1 234 0 0 0 chr12 53385763 53385789 -90400666 + (ATG)n Simple_repeat Simple_repeat 1 26 0 623 200 114 114 chr12 53386227 53386437 -90400018 - MER63A DNA MER1_type 0 210 1 189 297 85 68 chr12 53386501 53386602 -90399853 + MIR SINE MIR 19 124 -84 2160 92 3 32 chr12 53386602 53386916 -90399539 - AluSx SINE Alu -7 305 1 189 297 85 68 chr12 53386916 53386932 -90399523 + MIR SINE MIR 124 138 -70 1987 132 3 23 chr12 53387070 53387374 -90399081 - AluSq SINE Alu -15 298 1 1589 187 3 10 chr12 53387374 53387667 -90398788 - AluJo SINE Alu -10 302 11 2494 29 3 19 chr12 53387725 53388041 -90398414 + AluY SINE Alu 1 311 0 21 0 0 0 chr12 53389197 53389218 -90397237 + GC_rich Low_complexity Low_complexity 1 21 0 533 319 54 71 chr12 53390317 53390580 -90395875 + L3 LINE CR1 1120 1377 -200 1514 178 41 4 chr12 53390580 53390850 -90395605 + AluSx SINE Alu 25 304 -8 533 319 54 71 chr12 53390850 53390937 -90395518 + L3 LINE CR1 1377 1464 -113 766 272 95 21 chr12 53391102 53391345 -90395110 - MIR SINE MIR -1 261 1 387 224 92 0 chr12 53391371 53391469 -90394986 - MIR SINE MIR -109 153 47 1803 164 23 3 chr12 53391783 53392088 -90394367 - AluJb SINE Alu -1 311 1 885 152 161 88 chr12 53393512 53393676 -90392779 - AluJo SINE Alu -4 308 123 1836 177 0 0 chr12 53393676 53393970 -90392485 + AluJo SINE Alu 2 295 -17 885 152 161 88 chr12 53393970 53394022 -90392433 - AluJo SINE Alu -189 123 76 205 229 21 0 chr12 53394103 53394151 -90392304 - L2 LINE L2 -5 3267 3219 530 239 235 33 chr12 53394306 53394519 -90391936 + MIR SINE MIR 4 259 -3 1598 161 34 37 chr12 53394878 53395176 -90391279 + AluJo SINE Alu 3 299 -13 399 335 145 6 chr12 53395314 53395493 -90390962 + MIR SINE MIR 16 219 -43 1165 79 58 0 chr12 53396839 53397028 -90389427 - L1PA13 LINE L1 -82 6081 5882 241 278 241 15 chr12 53400740 53400873 -90385582 - MIR3 SINE MIR -25 183 21 266 333 119 8 chr12 53402721 53402847 -90383608 + MIR SINE MIR 97 236 -26 476 104 0 13 chr12 53402891 53402968 -90383487 + (GGAGA)n Simple_repeat Simple_repeat 2 77 0 341 252 108 144 chr12 53403003 53403092 -90383363 - L2 LINE L2 -1 3271 3180 1873 99 76 53 chr12 53403092 53403395 -90383060 + AluSg SINE Alu 1 310 0 341 252 108 144 chr12 53403395 53403638 -90382817 - L2 LINE L2 -92 3180 2951 280 323 192 18 chr12 53403670 53404060 -90382395 - L2 LINE L2 -453 2861 2404 556 269 30 20 chr12 53404068 53404269 -90382186 - MLT1K LTR MaLR -2 586 384 833 296 24 8 chr12 53404272 53404522 -90381933 + MIR SINE MIR 2 255 -7 338 388 161 14 chr12 53405609 53406173 -90380282 + L2 LINE L2 782 1428 -1886 426 344 81 25 chr12 53406219 53406539 -90379916 + L2 LINE L2 1610 1947 -1367 799 291 113 32 chr12 53407045 53407451 -90379004 - L2 LINE L2 -3 3310 2872 776 328 75 48 chr12 53407997 53408166 -90378289 - L2 LINE L2 -2 3311 3148 2087 161 41 88 chr12 53408166 53408311 -90378144 - MLT1C LTR MaLR 0 467 317 1527 161 36 29 chr12 53408311 53408585 -90377870 + AluJb SINE Alu 1 276 -36 2087 161 41 88 chr12 53408585 53408596 -90377859 - MLT1C LTR MaLR -150 317 307 351 0 0 0 chr12 53408596 53408635 -90377820 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2087 161 41 88 chr12 53408635 53408963 -90377492 - MLT1C LTR MaLR -160 307 5 776 328 75 48 chr12 53408963 53409055 -90377400 - L2 LINE L2 -165 3148 3060 1943 118 0 40 chr12 53409055 53409381 -90377074 - AluSx SINE Alu 0 314 1 776 328 75 48 chr12 53409381 53409599 -90376856 - L2 LINE L2 -253 3060 2817 290 326 0 0 chr12 53409620 53409712 -90376743 + HAL1 LINE L1 1657 1748 -759 1039 171 6 0 chr12 53410001 53410176 -90376279 - FRAM SINE Alu -2 174 1 238 301 37 0 chr12 53411456 53411592 -90374863 + MER103 DNA DNA 8 148 -18 2281 112 0 0 chr12 53411740 53412052 -90374403 - AluSx SINE Alu 0 312 1 303 262 0 5 chr12 53412065 53412176 -90374279 - L1ME3A LINE L1 -194 5968 5862 272 176 15 29 chr12 53412260 53412328 -90374127 - MIR SINE MIR -1 261 195 1453 238 62 64 chr12 53412332 53412399 -90374056 - L1ME3A LINE L1 -340 5830 5764 2320 101 3 0 chr12 53412399 53412695 -90373760 - AluSp SINE Alu -16 297 1 2518 91 0 0 chr12 53412699 53413008 -90373447 - AluY SINE Alu -2 309 1 1453 238 62 64 chr12 53413008 53413330 -90373125 - L1ME3A LINE L1 -409 5761 5434 2020 109 47 0 chr12 53413330 53413643 -90372812 - AluSx SINE Alu 0 326 1 1453 238 62 64 chr12 53413643 53413796 -90372659 - L1ME3A LINE L1 -736 5434 5282 714 137 56 43 chr12 53413806 53413967 -90372488 - L1MA10 LINE L1 -2 6332 6170 556 249 122 35 chr12 53414590 53414787 -90371668 - MIR SINE MIR -1 261 48 517 252 30 7 chr12 53416002 53416137 -90370318 + MLT1J LTR MaLR 333 470 -41 285 345 22 22 chr12 53416312 53416451 -90370004 - MIR SINE MIR -102 160 22 1148 222 110 73 chr12 53417032 53417435 -90369020 - MLT1G LTR MaLR -16 574 187 2157 129 0 0 chr12 53417435 53417729 -90368726 + AluSx SINE Alu 5 298 -14 2469 87 0 0 chr12 53417730 53418030 -90368425 + AluY SINE Alu 1 300 -11 1148 222 110 73 chr12 53418030 53418168 -90368287 - MLT1G LTR MaLR -402 188 11 234 0 0 0 chr12 53418866 53418892 -90367563 + (A)n Simple_repeat Simple_repeat 1 26 0 3855 110 2 4 chr12 53420902 53421457 -90364998 + MER41A LTR ERV1 1 554 0 1833 44 40 128 chr12 53421581 53421879 -90364576 - AluY SINE Alu -39 272 1 357 134 0 143 chr12 53422736 53422815 -90363640 + MER3 DNA MER1_type 81 94 -68 2279 101 3 3 chr12 53422815 53423111 -90363344 - AluSx SINE Alu -16 296 1 357 134 0 143 chr12 53423111 53423143 -90363312 + MER3 DNA MER1_type 94 129 -33 669 64 85 0 chr12 53423240 53423334 -90363121 - PABL_A LTR ERV1 -558 102 1 299 359 35 7 chr12 53423479 53423621 -90362834 - L2 LINE L2 -945 2369 2224 234 173 135 19 chr12 53423680 53423732 -90362723 - AluJ/FLAM SINE Alu -244 58 1 12750 71 2 18 chr12 53423800 53425511 -90360944 + HERVE LTR ERV1 2798 4482 -3331 1850 134 33 10 chr12 53425650 53425949 -90360506 + AluSx SINE Alu 1 306 -6 485 188 45 0 chr12 53426039 53426151 -90360304 - L2 LINE L2 -938 2376 2260 2181 101 24 3 chr12 53426286 53426573 -90359882 - AluSx SINE Alu -19 293 1 2464 97 0 0 chr12 53426591 53426901 -90359554 - AluY SINE Alu -1 310 1 1146 52 0 22 chr12 53426903 53427038 -90359417 - AluY SINE Alu -179 132 1 266 300 9 36 chr12 53427345 53427455 -90359000 + MIR3 SINE MIR 87 193 -15 1098 217 66 53 chr12 53427510 53427939 -90358516 - MLT1C LTR MaLR -1 466 29 2179 134 0 0 chr12 53427939 53428244 -90358211 - AluSx SINE Alu -7 305 1 1098 217 66 53 chr12 53428244 53428270 -90358185 - MLT1C LTR MaLR -438 29 5 379 341 37 91 chr12 53429018 53429426 -90357029 + L2 LINE L2 2886 3271 -1 1786 152 10 23 chr12 53429917 53430220 -90356235 - AluSx SINE Alu -13 299 1 327 306 0 16 chr12 53430711 53430832 -90355623 + MIR SINE MIR 130 248 -14 2335 119 0 0 chr12 53430840 53431150 -90355305 - AluSx SINE Alu -2 310 1 355 233 78 26 chr12 53431401 53431517 -90354938 + L3 LINE CR1 1387 1508 -69 354 310 76 20 chr12 53432220 53432417 -90354038 + L2 LINE L2 2947 3154 -159 414 220 77 0 chr12 53432421 53432512 -90353943 - MER45A DNA AcHobo -1 177 80 181 271 35 71 chr12 53432563 53432648 -90353807 + L2 LINE L2 3165 3246 -67 263 185 12 86 chr12 53432986 53433067 -90353388 + MIR SINE MIR 77 151 -111 261 122 0 0 chr12 53433727 53433768 -90352687 + MIR SINE MIR 210 250 -12 419 0 20 0 chr12 53434687 53434738 -90351717 + (TG)n Simple_repeat Simple_repeat 1 52 0 191 321 0 0 chr12 53435582 53435635 -90350820 + L3b LINE CR1 1335 1387 -196 252 333 7 15 chr12 53436963 53437098 -90349357 + (TTGGGG)n Simple_repeat Simple_repeat 3 136 0 238 224 19 58 chr12 53438554 53438710 -90347745 + (TTA)n Simple_repeat Simple_repeat 1 150 0 1933 218 109 14 chr12 53438730 53439437 -90347018 - SATR1 Satellite Satellite -52 774 1 2059 185 113 16 chr12 53439467 53440477 -90345978 - SATR1 Satellite Satellite 0 1107 1 2270 164 101 12 chr12 53440505 53442367 -90344088 - SATR1 Satellite Satellite -3 2028 1 2309 96 0 50 chr12 53442367 53442689 -90343766 - AluSp SINE Alu -7 306 1 243 226 10 71 chr12 53442873 53443056 -90343399 + L1MA7 LINE L1 5767 5960 -331 1890 147 0 7 chr12 53443056 53443341 -90343114 + AluSx SINE Alu 1 283 -29 243 226 10 71 chr12 53443341 53443578 -90342877 + L1MA7 LINE L1 5960 6153 -138 2353 95 3 3 chr12 53443623 53443929 -90342526 - AluSp SINE Alu -7 306 1 3167 221 27 43 chr12 53443974 53444961 -90341494 + L1MB3 LINE L1 4818 5820 -363 2153 129 3 3 chr12 53444961 53445272 -90341183 + AluSx SINE Alu 1 311 -1 3167 221 27 43 chr12 53445272 53445393 -90341062 + L1MB3 LINE L1 5820 5942 -241 1980 134 25 0 chr12 53445393 53445668 -90340787 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr12 53445671 53445695 -90340760 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3167 221 27 43 chr12 53445695 53445940 -90340515 + L1MB3 LINE L1 5944 6153 -30 35 0 0 0 chr12 53445957 53445992 -90340463 + AT_rich Low_complexity Low_complexity 1 35 0 273 275 0 25 chr12 53446365 53446445 -90340010 + CT-rich Low_complexity Low_complexity 3 80 0 2240 103 3 10 chr12 53446756 53447067 -90339388 + AluSg SINE Alu 1 309 -1 262 283 44 26 chr12 53447451 53447564 -90338891 + L2 LINE L2 3158 3272 0 2215 105 7 3 chr12 53447622 53447926 -90338529 - AluSq SINE Alu -8 305 1 1086 207 188 25 chr12 53449617 53450027 -90336428 - SATR1 Satellite Satellite -1 476 1 578 236 157 51 chr12 53450074 53450290 -90336165 - SATR1 Satellite Satellite -4 466 228 1099 190 317 3 chr12 53450305 53450652 -90335803 - SATR1 Satellite Satellite -2 468 13 1210 202 307 9 chr12 53450691 53451776 -90334679 - SATR1 Satellite Satellite -1 1408 1 903 221 248 50 chr12 53451818 53453481 -90332974 - SATR1 Satellite Satellite -3 1992 1 661 192 299 21 chr12 53453570 53453861 -90332594 - SATR1 Satellite Satellite -92 378 7 1060 199 239 40 chr12 53454023 53455030 -90331425 - SATR1 Satellite Satellite -1 1207 1 1056 203 205 41 chr12 53455052 53455685 -90330770 - SATR1 Satellite Satellite -2 736 1 2319 180 113 7 chr12 53455722 53457257 -90329198 + SATR1 Satellite Satellite 1 1697 -20 4625 76 5 3 chr12 53457257 53457879 -90328576 - HERVE LTR ERV1 -2648 5165 4543 1914 283 51 21 chr12 53458005 53458610 -90327845 - HERV16 LTR ERVL -2363 2633 2011 1469 217 150 0 chr12 53458616 53458971 -90327484 - MLT1F1 LTR MaLR -7 560 152 812 217 101 24 chr12 53458971 53459178 -90327277 + MER58A DNA MER1_type 1 223 -1 607 206 16 0 chr12 53459179 53459305 -90327150 - MLT1F1 LTR MaLR -408 159 32 672 290 63 0 chr12 53459317 53459538 -90326917 - HERV16 LTR ERVL -2985 2011 1777 1427 286 55 18 chr12 53459639 53460238 -90326217 - HERV16 LTR ERVL -3418 1578 958 526 312 60 65 chr12 53460240 53460653 -90325802 + L2 LINE L2 2862 3272 0 2379 93 7 7 chr12 53460655 53460965 -90325490 + AluY SINE Alu 1 310 -1 2062 112 10 38 chr12 53461557 53461871 -90324584 - AluSx SINE Alu -7 305 1 408 151 0 70 chr12 53462214 53462300 -90324155 - MLT1H LTR MaLR -378 171 92 1404 142 9 21 chr12 53462316 53462549 -90323906 - AluJo SINE Alu -14 298 69 227 341 7 15 chr12 53664325 53664460 -90121995 + (CCCCAA)n Simple_repeat Simple_repeat 3 136 0 206 321 0 0 chr12 53665792 53665845 -90120610 - L3b LINE CR1 -196 1387 1335 419 0 20 0 chr12 53666689 53666740 -90119715 + (CA)n Simple_repeat Simple_repeat 1 52 0 200 355 36 29 chr12 53667274 53667412 -90119043 - L2 LINE L2 -911 2403 2265 259 208 52 52 chr12 53667646 53667723 -90118732 - L2 LINE L2 -5 3308 3232 274 232 10 84 chr12 53668360 53668505 -90117950 - MIR SINE MIR -71 137 24 198 271 35 71 chr12 53668778 53668863 -90117592 - L2 LINE L2 -67 3246 3165 381 244 12 0 chr12 53668919 53669005 -90117450 + MER45A DNA AcHobo 91 177 -1 400 327 73 32 chr12 53669009 53669368 -90117087 - L2 LINE L2 -159 3154 2667 378 271 178 51 chr12 53669909 53670123 -90116332 - L3 LINE CR1 -69 1508 1268 185 295 16 0 chr12 53670163 53670224 -90116231 - L2 LINE L2 -49 3223 3162 2191 126 0 0 chr12 53670276 53670585 -90115870 + AluSx SINE Alu 1 309 -3 239 361 0 25 chr12 53670593 53670715 -90115740 - MIR SINE MIR -14 248 130 347 263 72 10 chr12 53670960 53671084 -90115371 + MIR SINE MIR 21 165 -92 545 171 23 78 chr12 53671537 53671666 -90114789 - FLAM_A SINE Alu 0 142 21 215 219 162 19 chr12 53671670 53671775 -90114680 - MIR SINE MIR -58 150 31 255 103 0 0 chr12 53672060 53672099 -90114356 + (CGGGA)n Simple_repeat Simple_repeat 3 41 0 183 222 0 0 chr12 53672791 53672836 -90113619 + (CA)n Simple_repeat Simple_repeat 1 45 0 226 223 165 10 chr12 53673041 53673144 -90113311 + MIR3 SINE MIR 55 173 -35 435 261 121 64 chr12 53673640 53673889 -90112566 + L3 LINE CR1 1242 1504 -73 315 158 18 0 chr12 53673842 53673899 -90112556 - L2 LINE L2 -15 3298 3241 * 295 391 105 4 chr12 53674179 53674417 -90112038 + L3b LINE CR1 1298 1559 -24 303 304 71 18 chr12 53675405 53675517 -90110938 - MIR SINE MIR -58 150 33 327 300 118 0 chr12 53676456 53676566 -90109889 + MIR SINE MIR 71 193 -69 338 279 39 19 chr12 53677275 53677379 -90109076 - L2 LINE L2 -3 3310 3205 186 43 0 0 chr12 53677772 53677795 -90108660 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 249 296 25 0 chr12 53677877 53677958 -90108497 + MIR SINE MIR 74 156 -106 306 250 202 0 chr12 53678641 53678745 -90107710 - MIR3 SINE MIR -3 205 81 370 276 29 0 chr12 53679340 53679445 -90107010 - MIR3 SINE MIR -24 184 77 514 283 82 6 chr12 53679449 53679608 -90106847 + MER91A DNA MER1_type 1 171 -25 296 289 105 3 chr12 53680054 53680159 -90106296 - MIR SINE MIR -103 105 7 340 311 38 0 chr12 53680174 53680280 -90106175 + MIR SINE MIR 108 217 -45 1989 108 9 58 chr12 53682425 53682750 -90103705 - AluSc SINE Alu 0 309 1 1871 133 0 4 chr12 53682755 53683026 -90103429 - AluSx SINE Alu -23 289 20 320 344 56 0 chr12 53683151 53683311 -90103144 - L2 LINE L2 -166 3106 2938 343 167 0 0 chr12 53683682 53683742 -90102713 - MER3 DNA MER1_type -149 60 1 489 281 65 6 chr12 53683824 53683993 -90102462 + MIR3 SINE MIR 2 183 -25 458 238 74 69 chr12 53684169 53684371 -90102084 + L2 LINE L2 3110 3312 -1 324 222 61 0 chr12 53685693 53685792 -90100663 - AluSq/x SINE Alu -179 123 19 237 372 16 16 chr12 53686267 53686388 -90100067 + MIR SINE MIR 8 128 -134 189 229 129 29 chr12 53686470 53686540 -90099915 - MIR SINE MIR -92 116 40 311 307 17 31 chr12 53687772 53687913 -90098542 - L1MC/D LINE L1 -326 5795 5713 205 313 31 0 chr12 53688750 53688814 -90097641 - MIR SINE MIR -64 144 79 1100 229 110 58 chr12 53690701 53690831 -90095624 + MLT1G LTR MaLR 11 133 -457 2344 97 0 0 chr12 53690831 53691139 -90095316 - AluY SINE Alu -3 308 1 2072 129 0 0 chr12 53691140 53691434 -90095021 - AluSx SINE Alu -14 298 5 1100 229 110 58 chr12 53691434 53691837 -90094618 + MLT1G LTR MaLR 132 574 -16 329 360 14 14 chr12 53692418 53692557 -90093898 + MIR SINE MIR 22 160 -102 494 252 30 7 chr12 53692732 53692867 -90093588 - MLT1J LTR MaLR -41 470 333 259 269 237 0 chr12 53694138 53694231 -90092224 + L2 LINE L2 3191 3305 -8 199 306 14 42 chr12 53694414 53694486 -90091969 - L2 LINE L2 -18 3254 3185 287 247 68 0 chr12 53694999 53695072 -90091383 + L2 LINE L2 3210 3287 -26 180 0 0 0 chr12 53696146 53696166 -90090289 + (TCC)n Simple_repeat Simple_repeat 1 20 0 362 309 15 37 chr12 53696572 53696633 -90089822 - MIR SINE MIR -114 148 87 1764 173 141 71 chr12 53696633 53697007 -90089448 + MLT1D LTR MaLR 5 420 -85 2059 138 0 0 chr12 53697007 53697305 -90089150 - AluSx SINE Alu -14 298 1 1764 173 141 71 chr12 53697305 53697397 -90089058 + MLT1D LTR MaLR 420 504 -1 362 309 15 37 chr12 53697397 53697471 -90088984 - MIR SINE MIR -175 87 16 390 317 175 0 chr12 53697847 53698029 -90088426 + MIR SINE MIR 32 250 -12 362 229 57 86 chr12 53699676 53699816 -90086639 - MIR SINE MIR -68 194 59 209 286 0 38 chr12 53700277 53700382 -90086073 + G-rich Low_complexity Low_complexity 6 106 0 850 223 121 0 chr12 53701227 53701433 -90085022 + MIR SINE MIR 10 240 -22 211 264 57 0 chr12 53701746 53701799 -90084656 - MIR SINE MIR -98 164 109 252 191 0 0 chr12 53701832 53701879 -90084576 - 5S rRNA rRNA -42 79 33 581 253 114 36 chr12 53702718 53702929 -90083526 + MIR SINE MIR 35 261 -1 792 137 56 43 chr12 53703552 53703713 -90082742 + L1MA10 LINE L1 6170 6332 -2 1125 265 66 37 chr12 53703714 53703876 -90082579 + L1ME LINE L1 5275 5431 -739 1922 109 47 0 chr12 53703876 53704189 -90082266 + AluSx SINE Alu 1 326 0 1125 265 66 37 chr12 53704189 53704511 -90081944 + L1ME LINE L1 5431 5774 -396 677 114 0 0 chr12 53704514 53704602 -90081853 + AluY SINE Alu 4 91 -220 1647 278 54 18 chr12 53704703 53705258 -90081197 - HERV16 LTR ERVL -2411 2585 2011 546 199 0 29 chr12 53705264 53705400 -90081055 - MLT1F LTR MaLR -7 535 404 389 203 0 0 chr12 53705847 53705926 -90080529 + MER58B DNA MER1_type 262 340 -1 574 206 16 0 chr12 53705927 53706053 -90080402 - MLT1F1 LTR MaLR -408 159 32 631 313 14 0 chr12 53706072 53706286 -90080169 - HERV16 LTR ERVL -3003 1993 1777 341 273 30 20 chr12 53706387 53706486 -90079969 - HERV16 LTR ERVL -3418 1578 1479 239 252 22 37 chr12 53706818 53706953 -90079502 + G-rich Low_complexity Low_complexity 5 137 0 197 343 0 0 chr12 53707728 53707795 -90078660 + L2 LINE L2 3246 3312 -1 458 208 58 0 chr12 53709656 53709776 -90076679 - MIR SINE MIR -12 250 124 655 289 48 13 chr12 53709930 53710158 -90076297 - MIR SINE MIR -6 256 21 488 295 167 0 chr12 53710807 53711017 -90075438 + MIR SINE MIR 13 257 -5 281 239 20 35 chr12 53711291 53711407 -90075048 + MIR SINE MIR 18 129 -79 246 135 0 0 chr12 53712527 53712564 -90073891 + MIR SINE MIR 114 150 -58 383 336 0 7 chr12 53713460 53713597 -90072858 + MIR3 SINE MIR 70 205 -3 484 262 39 87 chr12 53713809 53714008 -90072447 - L1ME3A LINE L1 -4 6166 5986 2258 112 0 0 chr12 53714008 53714320 -90072135 - AluSx SINE Alu 0 312 1 484 262 39 87 chr12 53714320 53714429 -90072026 - L1ME3A LINE L1 -184 5986 5873 230 157 0 39 chr12 53714528 53714579 -90071876 - MIR SINE MIR -1 261 213 307 196 0 7 chr12 53714585 53714667 -90071788 - L1ME3A LINE L1 -327 5839 5761 1870 111 18 0 chr12 53714667 53714946 -90071509 - AluSp SINE Alu -15 298 15 228 233 0 0 chr12 53716707 53716750 -90069705 - MER91A DNA MER1_type 0 140 98 237 383 0 11 chr12 53718839 53718933 -90067522 - MIR SINE MIR -120 142 50 737 255 66 12 chr12 53719270 53719513 -90066942 + MIR SINE MIR 5 260 -2 1556 200 13 7 chr12 53720059 53720359 -90066096 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 53720359 53720380 -90066075 + (CAG)n Simple_repeat Simple_repeat 2 22 0 275 167 0 0 chr12 53720692 53720740 -90065715 + MIR SINE MIR 78 125 -83 2290 101 0 3 chr12 53720768 53721075 -90065380 + AluSp SINE Alu 1 306 -7 225 146 0 0 chr12 53724088 53724136 -90062319 + (TG)n Simple_repeat Simple_repeat 1 48 0 291 300 0 10 chr12 53724956 53725056 -90061399 + G-rich Low_complexity Low_complexity 1 99 0 492 294 188 20 chr12 53725277 53725570 -90060885 - L1MC4 LINE L1 0 8042 7701 851 193 4 107 chr12 53725648 53725881 -90060574 - MER3 DNA MER1_type 0 209 1 245 319 92 8 chr12 53725893 53726012 -90060443 - L1MC4 LINE L1 -548 7494 7366 1421 109 0 71 chr12 53726012 53726251 -90060204 + AluSx SINE Alu 1 222 -90 681 239 86 10 chr12 53726363 53726568 -90059887 - MIR SINE MIR -14 248 27 204 182 0 0 chr12 53727632 53727676 -90058779 + GA-rich Low_complexity Low_complexity 1 44 0 705 265 115 7 chr12 53728004 53728283 -90058172 - L1ME3A LINE L1 -223 5947 5639 617 289 78 23 chr12 53728353 53728571 -90057884 - MIR SINE MIR -2 260 31 313 100 0 0 chr12 53728880 53728930 -90057525 + L2 LINE L2 3263 3312 -1 212 338 106 13 chr12 53730880 53731031 -90055424 - L3b LINE CR1 -115 1468 1304 345 294 20 0 chr12 53731478 53731580 -90054875 - MIR SINE MIR -1 261 158 1106 223 24 0 chr12 53731681 53731932 -90054523 - MIR SINE MIR 0 262 6 207 0 0 0 chr12 53731944 53731967 -90054488 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5927 144 16 4 chr12 53731972 53733294 -90053161 - L1MA4 LINE L1 -1 6299 4962 416 264 56 68 chr12 53733297 53733547 -90052908 + MER112 DNA MER1_type 8 254 -6 184 286 20 0 chr12 53733656 53733705 -90052750 + L2 LINE L2 3039 3088 -184 * 207 350 10 20 chr12 53733676 53733776 -90052679 - MIR SINE MIR -147 115 17 232 333 118 0 chr12 53734891 53734993 -90051462 - L2 LINE L2 -33 3239 3126 294 277 201 6 chr12 53735368 53735527 -90050928 + MIR3 SINE MIR 19 208 0 225 307 0 52 chr12 53735677 53735830 -90050625 + CT-rich Low_complexity Low_complexity 4 148 0 485 303 82 10 chr12 53737024 53737227 -90049228 + MIR SINE MIR 34 252 -6 213 39 0 0 chr12 53737227 53737253 -90049202 + (TTA)n Simple_repeat Simple_repeat 2 27 0 314 267 176 23 chr12 53739053 53739229 -90047226 + L3b LINE CR1 1359 1561 -22 181 340 66 19 chr12 53739649 53739755 -90046700 + MIR3 SINE MIR 11 121 -87 230 356 47 0 chr12 53740957 53741125 -90045330 + MIR3 SINE MIR 63 242 -20 213 270 34 34 chr12 53741272 53741361 -90045094 + L2 LINE L2 2882 2970 -302 264 324 184 14 chr12 53741889 53742096 -90044359 - L2 LINE L2 -30 3242 3001 784 243 17 66 chr12 53742392 53742667 -90043788 - MIR SINE MIR 0 262 1 641 203 48 145 chr12 53745233 53745523 -90040932 - L2 LINE L2 -1 3312 3051 245 274 81 32 chr12 53745636 53745760 -90040695 - L2 LINE L2 -237 3035 2906 418 320 43 83 chr12 53746112 53746484 -90039971 - MLT1J LTR MaLR -2 509 153 2027 143 0 13 chr12 53746573 53746888 -90039567 - AluSx SINE Alu -1 311 1 400 290 124 5 chr12 53747897 53748090 -90038365 + L3 LINE CR1 1361 1576 -1 191 340 41 10 chr12 53751631 53751728 -90034727 - L2 LINE L2 -2 3270 3171 1833 225 39 11 chr12 53751771 53752229 -90034226 + L1MB8 LINE L1 5539 6009 -169 1023 135 6 13 chr12 53752266 53752422 -90034033 + FRAM SINE Alu 1 152 -24 23 0 0 0 chr12 53752423 53752446 -90034009 + AT_rich Low_complexity Low_complexity 1 23 0 556 141 96 30 chr12 53752446 53752581 -90033874 + L1MB8 LINE L1 6029 6172 -6 219 275 50 12 chr12 53753508 53753588 -90032867 - L2 LINE L2 -1 3271 3189 387 248 108 0 chr12 53755256 53755385 -90031070 - MIR SINE MIR -34 228 86 344 239 34 11 chr12 53755469 53755557 -90030898 - MER97c DNA MER1_type? -999 91 2 225 281 31 16 chr12 53755559 53755623 -90030832 - MIR SINE MIR -168 94 30 2889 258 112 18 chr12 53756006 53756888 -90029567 - L2 LINE L2 -1 3312 2258 1826 149 95 9 chr12 53756888 53757204 -90029251 - MER2 DNA MER2_type -1 343 1 2889 258 112 18 chr12 53757204 53757620 -90028835 - L2 LINE L2 -1055 2258 1883 858 126 39 0 chr12 53758132 53758259 -90028196 + FLAM_A SINE Alu 1 132 -1 352 253 101 0 chr12 53758283 53758382 -90028073 + L2 LINE L2 3164 3272 0 322 253 12 12 chr12 53760309 53760392 -90026063 + MIR3 SINE MIR 108 190 -18 289 300 93 27 chr12 53764496 53764646 -90021809 - MER5B DNA MER1_type -18 160 1 187 314 0 48 chr12 53765580 53765685 -90020770 - L2 LINE L2 -213 3059 2960 375 344 64 18 chr12 53767712 53768038 -90018417 + L2 LINE L2 2569 2909 -405 * 552 294 54 120 chr12 53768023 53768466 -90017989 - L2 LINE L2 -1 3271 2858 1074 225 119 68 chr12 53768826 53769558 -90016897 + L1MDa LINE L1 1357 2397 -4143 735 222 0 0 chr12 53769559 53769694 -90016761 + AluJo SINE Alu 2 136 -176 596 256 45 6 chr12 53769721 53769877 -90016578 + L1MDa LINE L1 2441 2602 -4119 320 227 31 21 chr12 53769879 53769976 -90016479 - MER34 LTR ERV1 0 542 445 428 204 9 19 chr12 53770009 53770117 -90016338 + L1MDa LINE L1 3013 3119 -3421 3752 220 54 29 chr12 53770141 53771231 -90015224 + L1MDa LINE L1 3847 4963 -1577 293 239 43 33 chr12 53771232 53771324 -90015131 + MIR SINE MIR 6 98 -164 590 237 242 5 chr12 53771335 53771546 -90014909 - MIR SINE MIR 0 262 2 343 331 61 0 chr12 53771546 53771686 -90014769 + MIR SINE MIR 96 245 -17 894 246 125 48 chr12 53772342 53772963 -90013492 - L2 LINE L2 0 3313 2632 396 299 66 6 chr12 53775487 53775654 -90010801 - MIR SINE MIR -60 202 26 558 201 13 6 chr12 53777883 53778042 -90008413 + (TG)n Simple_repeat Simple_repeat 2 161 0 247 245 174 0 chr12 53778266 53778364 -90008091 + MIR SINE MIR 148 262 0 258 262 159 16 chr12 53778826 53778952 -90007503 + MIR SINE MIR 58 201 -61 205 283 0 50 chr12 53779002 53779062 -90007393 + L2 LINE L2 3255 3311 -2 704 255 106 10 chr12 53779088 53779329 -90007126 - MIR SINE MIR 0 262 3 292 254 79 26 chr12 53780955 53781087 -90005368 + MIR3 SINE MIR 53 193 -15 228 233 0 0 chr12 53781553 53781596 -90004859 - MER91A DNA MER1_type 0 140 98 180 0 0 0 chr12 53782518 53782538 -90003917 + (TAA)n Simple_repeat Simple_repeat 2 21 0 436 294 119 20 chr12 53782539 53782740 -90003715 - MIR SINE MIR -19 243 23 210 316 103 69 chr12 53785834 53786008 -90000447 + MIR3 SINE MIR 27 206 -2 318 204 54 163 chr12 53788140 53788655 -89997800 + MER45C DNA AcHobo 174 632 -321 353 256 268 0 chr12 53789339 53789503 -89996952 + MIR SINE MIR 49 256 -6 645 232 32 32 chr12 53789700 53789885 -89996570 - MER5A DNA MER1_type -2 187 3 1065 219 45 8 chr12 53791993 53792239 -89994216 + MIR SINE MIR 3 257 -5 1756 151 0 0 chr12 53792263 53792528 -89993927 + AluSx SINE Alu 24 288 -24 23 0 0 0 chr12 53792933 53792956 -89993499 + AT_rich Low_complexity Low_complexity 1 23 0 665 210 150 0 chr12 53793410 53793577 -89992878 - MIR SINE MIR -68 194 3 555 255 36 47 chr12 53794063 53794255 -89992200 + MIR3 SINE MIR 7 196 -12 341 355 12 48 chr12 53794878 53795044 -89991411 - MIR SINE MIR -50 212 53 624 304 90 37 chr12 53795442 53796031 -89990424 + L1ME LINE L1 4936 5561 -601 23 0 0 0 chr12 53796714 53796737 -89989718 + AT_rich Low_complexity Low_complexity 1 23 0 280 355 19 9 chr12 53798642 53798749 -89987706 + MIR SINE MIR 20 127 -81 2393 65 0 13 chr12 53799070 53799378 -89987077 - AluSq SINE Alu -9 304 1 1411 202 186 18 chr12 53800761 53801088 -89985367 + MLT1E2 LTR MaLR 231 612 -14 741 247 89 44 chr12 53801265 53801536 -89984919 + Charlie8 DNA MER1_type 2 284 -2133 574 248 138 0 chr12 53801991 53802136 -89984319 - MER91A DNA MER1_type -20 176 12 292 308 37 3 chr12 53803885 53804009 -89982446 - HERVL LTR ERVL -2209 2805 2666 1711 148 24 3 chr12 53804009 53804300 -89982155 + AluJo SINE Alu 1 297 -15 2529 55 0 3 chr12 53804305 53804616 -89981839 + AluY SINE Alu 1 310 -1 315 314 0 16 chr12 53804624 53804745 -89981710 - MIR SINE MIR -14 248 130 1657 157 10 23 chr12 53805236 53805541 -89980914 + AluSx SINE Alu 1 301 -11 374 337 37 93 chr12 53806030 53806439 -89980016 - L2 LINE L2 -1 3271 2886 1303 220 65 52 chr12 53807183 53807213 -89979242 + MLT1C LTR MaLR 1 29 -438 2053 134 0 0 chr12 53807213 53807518 -89978937 + AluSx SINE Alu 1 305 -7 1303 220 65 52 chr12 53807518 53807947 -89978508 + MLT1C LTR MaLR 29 466 -1 277 300 9 36 chr12 53808002 53808112 -89978343 - MIR3 SINE MIR -15 193 87 1080 52 0 22 chr12 53808419 53808554 -89977901 + AluY SINE Alu 1 132 -179 1791 151 3 6 chr12 53808556 53808867 -89977588 + AluY SINE Alu 1 310 -1 1906 113 25 7 chr12 53808890 53809174 -89977281 + AluSx SINE Alu 5 293 -19 475 198 54 0 chr12 53809309 53809420 -89977035 + L2 LINE L2 2260 2376 -938 221 328 47 0 chr12 53809764 53809828 -89976627 - MIR SINE MIR -146 116 50 308 343 60 0 chr12 53810582 53810716 -89975739 - L2 LINE L2 -6 3266 3125 1296 87 0 0 chr12 53811085 53811257 -89975198 + AluY SINE Alu 131 302 -9 208 238 0 0 chr12 53812717 53812759 -89973696 + MER91A DNA MER1_type 1 42 -148 311 44 22 0 chr12 53813124 53813169 -89973286 + (TG)n Simple_repeat Simple_repeat 2 47 0 460 332 47 21 chr12 53813809 53813999 -89972456 + MER91A DNA MER1_type 2 196 0 580 259 94 6 chr12 53814316 53814486 -89971969 - MIR3 SINE MIR -7 201 17 250 297 0 0 chr12 53815398 53815462 -89970993 + (TG)n Simple_repeat Simple_repeat 2 65 0 228 209 33 66 chr12 53816981 53817072 -89969383 + MIR3 SINE MIR 106 193 -15 244 250 0 0 chr12 53817417 53817469 -89968986 - L2 LINE L2 -229 3043 2992 301 316 40 40 chr12 53817470 53817644 -89968811 - L2 LINE L2 0 3313 3140 435 273 15 23 chr12 53818502 53818634 -89967821 + MLT1H1 LTR MaLR 80 210 -339 560 167 321 0 chr12 53818704 53818872 -89967583 + MLT1H1 LTR MaLR 331 552 -3 538 201 101 27 chr12 53819034 53819183 -89967272 + LTR41 LTR ERVL 608 767 -6 325 273 157 10 chr12 53819191 53819416 -89967039 + MLT1G LTR MaLR 323 590 0 431 264 41 25 chr12 53819419 53819540 -89966915 - MIR SINE MIR -91 171 49 407 297 48 42 chr12 53819582 53819747 -89966708 - MIR3 SINE MIR -24 184 19 971 175 21 16 chr12 53819868 53820057 -89966398 + MER20 DNA MER1_type 30 219 0 319 236 225 47 chr12 53821374 53821565 -89964890 + MIR SINE MIR 32 256 -6 183 291 223 10 chr12 53821652 53821755 -89964700 + L2 LINE L2 3189 3313 0 * 199 374 84 0 chr12 53821753 53821836 -89964619 - MIR3 SINE MIR -13 195 106 252 186 0 0 chr12 53823856 53823899 -89962556 + MER91 DNA MER1_type 98 140 0 187 326 70 16 chr12 53827014 53827143 -89959312 + L2 LINE L2 3123 3258 -14 201 94 0 0 chr12 53828205 53828237 -89958218 + (CA)n Simple_repeat Simple_repeat 1 32 0 1866 140 3 0 chr12 53828575 53828861 -89957594 - AluSg SINE Alu -23 287 1 2217 84 0 13 chr12 53829439 53829738 -89956717 + AluY SINE Alu 1 295 -16 283 198 178 10 chr12 53829813 53829914 -89956541 - MIR SINE MIR -44 218 101 1715 165 0 31 chr12 53829937 53830259 -89956196 + AluJo SINE Alu 1 312 0 207 267 173 13 chr12 53832063 53832138 -89954317 + L2 LINE L2 3186 3272 0 461 237 53 8 chr12 53833642 53833773 -89952682 + MIR SINE MIR 76 212 -50 548 258 93 81 chr12 53835327 53835746 -89950709 - Charlie8 DNA MER1_type -1958 459 36 340 313 0 0 chr12 53836240 53836336 -89950119 + MIR SINE MIR 99 194 -68 398 304 184 30 chr12 53836435 53836636 -89949819 + L1M4 LINE L1 3788 4019 -2127 456 230 54 112 chr12 53838038 53838334 -89948121 - L1ME3A LINE L1 -221 5949 5671 310 265 20 61 chr12 53838359 53838506 -89947949 + MER112 DNA MER1_type 4 144 -116 317 197 66 0 chr12 53838525 53838586 -89947869 - L1M4 LINE L1 -3861 2285 2221 1252 277 133 26 chr12 53838853 53840258 -89946197 - L1ME3A LINE L1 -285 5885 4347 314 219 0 105 chr12 53840241 53840346 -89946109 - L1ME2 LINE L1 -8 6156 6063 * 1573 182 88 0 chr12 53840346 53840698 -89945757 - L1ME2 LINE L1 -328 5838 5456 202 214 18 18 chr12 53840717 53840773 -89945682 + GA-rich Low_complexity Low_complexity 2 57 0 2239 98 0 3 chr12 53841421 53841717 -89944738 - AluSx SINE Alu -17 295 1 681 205 0 24 chr12 53841728 53841855 -89944600 - FLAM_C SINE Alu -19 124 1 550 164 54 0 chr12 53842046 53842188 -89944267 - MER34B LTR ERV1 0 565 428 1674 142 81 0 chr12 53842273 53842568 -89943887 + MER2 DNA MER2_type 2 320 -25 933 249 80 19 chr12 53842571 53842896 -89943559 - MER34B LTR ERV1 -181 384 40 770 142 0 64 chr12 53842910 53843023 -89943432 + AluJ SINE Alu 2 106 -206 2363 122 21 29 chr12 53843023 53843401 -89943054 + THE1C LTR MaLR 1 375 0 770 142 0 64 chr12 53843401 53843428 -89943027 + AluJ SINE Alu 106 133 -179 1090 147 0 0 chr12 53843433 53843589 -89942866 + AluJ SINE Alu 137 292 -10 250 176 20 0 chr12 53843592 53843643 -89942812 - MER34C LTR ERV1 -497 88 37 630 290 45 0 chr12 53844294 53844470 -89941985 - MER63A DNA MER1_type 0 210 27 252 186 0 0 chr12 53845358 53845401 -89941054 - MER91 DNA MER1_type -147 43 1 1269 246 17 34 chr12 53845847 53845865 -89940590 - MER57-int LTR ERV1 -755 6205 6188 1749 136 16 52 chr12 53845865 53846174 -89940281 + AluSx SINE Alu 1 298 -14 1269 246 17 34 chr12 53846174 53846774 -89939681 - MER57-int LTR ERV1 -772 6188 2509 2176 102 0 3 chr12 53846964 53847257 -89939198 - AluSg SINE Alu -18 292 1 420 191 14 78 chr12 53847346 53847487 -89938968 + LTR21B LTR ERV1 307 438 0 662 235 123 7 chr12 53847495 53847794 -89938661 + MER57A LTR ERV1 98 510 0 369 0 0 0 chr12 53847854 53847895 -89938560 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 197 295 89 18 chr12 53847896 53848008 -89938447 + L2 LINE L2 3139 3258 -14 3310 114 24 24 chr12 53849071 53849563 -89936892 + LTR22B LTR ERVK 1 492 0 456 293 144 18 chr12 53849948 53850177 -89936278 - MIR SINE MIR 0 262 5 191 320 54 54 chr12 53850424 53850646 -89935809 + L2 LINE L2 2833 3054 -218 207 328 0 0 chr12 53851376 53851440 -89935015 - L3b LINE CR1 -202 1381 1318 4223 90 32 7 chr12 53851545 53852111 -89934344 + LTR19B LTR ERV1 1 580 0 444 305 26 59 chr12 53852671 53852902 -89933553 + MIR SINE MIR 24 249 -13 546 286 35 0 chr12 53853075 53853246 -89933209 - MIR SINE MIR 0 262 86 798 260 135 13 chr12 53854185 53854577 -89931878 - MER113 DNA MER1_type? -46 475 36 261 269 21 4 chr12 53854593 53854705 -89931750 - MIR SINE MIR -71 137 27 264 297 90 21 chr12 53856242 53856387 -89930068 + L3b LINE CR1 1328 1482 -101 235 267 0 47 chr12 53856414 53856500 -89929955 - L2 LINE L2 -1 3312 3231 231 293 13 27 chr12 53857172 53857247 -89929208 + L2 LINE L2 3197 3270 -2 197 292 67 11 chr12 53857416 53857505 -89928950 - MIR SINE MIR -76 132 39 252 186 0 0 chr12 53858790 53858833 -89927622 + MER91 DNA MER1_type 1 43 -147 413 261 9 9 chr12 53859241 53859356 -89927099 + MIR3 SINE MIR 3 117 -91 570 248 94 0 chr12 53859449 53859598 -89926857 - Charlie8 DNA MER1_type -2152 265 103 781 234 73 10 chr12 53860267 53860472 -89925983 - MER58A DNA MER1_type -3 221 4 1746 160 11 83 chr12 53860525 53860742 -89925713 + MER7A DNA MER2_type 1 232 -2806 1542 125 22 0 chr12 53860742 53860966 -89925489 - MER30 DNA MER1_type -1 229 1 2279 98 0 0 chr12 53860970 53861275 -89925180 + AluSx SINE Alu 3 307 -5 1746 160 11 83 chr12 53861275 53861426 -89925029 + MER7A DNA MER2_type 235 345 -1 298 350 118 0 chr12 53864241 53864427 -89922028 + MIR SINE MIR 52 259 -3 335 256 34 34 chr12 53865289 53865406 -89921049 + MIR3 SINE MIR 81 197 -11 241 298 84 46 chr12 53866418 53866549 -89919906 + L2 LINE L2 3178 3313 0 506 310 124 13 chr12 53866968 53867194 -89919261 + MIR SINE MIR 12 262 0 785 300 113 13 chr12 53868309 53868758 -89917697 - L2 LINE L2 -50 3263 2765 392 319 30 15 chr12 53869549 53869684 -89916771 - MIR3 SINE MIR -63 145 9 598 192 61 135 chr12 53869869 53869969 -89916486 + MIR SINE MIR 50 125 -137 2149 111 0 10 chr12 53869969 53870275 -89916180 + AluSx SINE Alu 1 303 -9 598 192 61 135 chr12 53870275 53870403 -89916052 + MIR SINE MIR 125 261 -1 1607 146 25 11 chr12 53871194 53871469 -89914986 + L1PA3 LINE L1 5876 6154 -1 300 333 0 19 chr12 53871469 53871577 -89914878 + L1ME4a LINE L1 5905 6010 -111 2161 105 7 3 chr12 53871587 53871891 -89914564 - AluSg SINE Alu -5 305 1 559 316 58 65 chr12 53871893 53872307 -89914148 - L2 LINE L2 0 3272 2862 816 247 49 12 chr12 53872309 53872556 -89913899 + HERV16 LTR ERVL 958 1213 -3783 211 297 154 11 chr12 53872698 53872789 -89913666 + L2 LINE L2 3168 3271 -1 206 255 0 0 chr12 53872828 53872875 -89913580 - L2 LINE L2 -1 3271 3225 250 304 0 0 chr12 53873577 53873633 -89912822 + (CA)n Simple_repeat Simple_repeat 1 56 0 1124 286 66 36 chr12 53874008 53874847 -89911608 - L2 LINE L2 -1 3312 2443 291 325 61 0 chr12 53874929 53875043 -89911412 + MIR3 SINE MIR 56 176 -32 1522 188 3 25 chr12 53875224 53875538 -89910917 - L1MA10 LINE L1 -3 6331 6025 2486 249 25 57 chr12 53875539 53876707 -89909748 - L1M4c LINE L1 -4224 2160 942 2241 92 0 43 chr12 53876707 53877033 -89909422 + AluSx SINE Alu 1 312 0 2486 249 25 57 chr12 53877033 53877053 -89909402 - L1M4c LINE L1 -5442 942 923 234 0 0 0 chr12 53877160 53877186 -89909269 + (A)n Simple_repeat Simple_repeat 1 26 0 1698 242 91 98 chr12 53877186 53878101 -89908354 - L1M3e LINE L1 -4971 2059 1 2280 81 7 7 chr12 53878545 53878840 -89907615 + AluSp SINE Alu 1 295 -18 629 211 38 70 chr12 53880195 53880380 -89906075 - MER97b DNA MER1_type? -874 179 1 306 282 18 27 chr12 53880380 53880487 -89905968 - MLT1J2 LTR MaLR -51 399 294 255 292 88 29 chr12 53881057 53881194 -89905261 - L2 LINE L2 0 3313 3169 208 210 0 48 chr12 53881533 53881595 -89904860 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 355 343 93 38 chr12 53881616 53882013 -89904442 - L2 LINE L2 -636 2678 2260 212 340 43 0 chr12 53881980 53882074 -89904381 - MIR SINE MIR -7 255 158 * 1032 270 49 64 chr12 53882074 53882481 -89903974 - MLT1I LTR MaLR -1 408 8 2377 107 50 19 chr12 53882834 53883198 -89903257 - THE1C LTR MaLR 0 375 1 287 286 9 48 chr12 53883352 53883457 -89902998 + MIR SINE MIR 162 262 0 703 331 89 36 chr12 53886224 53886693 -89899762 - L1M3 LINE L1 -428 5743 5300 288 0 0 0 chr12 53886693 53886725 -89899730 + (CA)n Simple_repeat Simple_repeat 2 33 0 703 331 89 36 chr12 53886725 53887552 -89898903 - L1M3 LINE L1 -871 5300 4339 1757 112 39 8 chr12 53887552 53887812 -89898643 - AluSq SINE Alu -45 268 1 703 331 89 36 chr12 53887812 53888100 -89898355 - L1M3 LINE L1 -1832 4339 4068 222 372 53 35 chr12 53888204 53888430 -89898025 + L2 LINE L2 2955 3184 -88 267 309 81 12 chr12 53888629 53888801 -89897654 - MIR SINE MIR -46 216 33 360 269 65 0 chr12 53888906 53889014 -89897441 + L1ME LINE L1 5614 5728 -393 279 344 108 13 chr12 53889670 53889827 -89896628 - MIR SINE MIR -68 194 23 314 253 0 48 chr12 53891142 53891225 -89895230 + L2 LINE L2 3235 3313 0 526 281 35 64 chr12 53894986 53895189 -89891266 + MIR SINE MIR 28 224 -38 414 315 185 17 chr12 53895155 53895571 -89890884 - L2 LINE L2 0 3313 2828 * 630 157 68 0 chr12 53895881 53896028 -89890427 - Charlie5 DNA MER1_type -27 2585 2429 342 67 0 0 chr12 53896232 53896277 -89890178 + (CA)n Simple_repeat Simple_repeat 2 46 0 449 243 9 9 chr12 53896695 53896806 -89889649 - MIR SINE MIR -5 257 147 * 957 244 59 13 chr12 53896796 53897034 -89889421 + MIR SINE MIR 11 259 -3 326 265 0 0 chr12 53897041 53897124 -89889331 - MIR SINE MIR -107 155 73 2270 103 3 0 chr12 53897132 53897444 -89889011 + AluSq SINE Alu 1 313 0 585 316 52 9 chr12 53898516 53898842 -89887613 + L1MC5 LINE L1 7302 7641 -320 429 230 50 0 chr12 53900958 53901058 -89885397 + MIR SINE MIR 78 182 -80 307 216 134 31 chr12 53901823 53901920 -89884535 + MIR SINE MIR 46 152 -110 253 254 0 0 chr12 53903892 53903947 -89882508 + C-rich Low_complexity Low_complexity 3 57 0 2365 137 54 24 chr12 53904559 53904931 -89881524 + MSTB LTR MaLR 1 388 -38 2141 102 0 3 chr12 53904931 53904942 -89881513 - AluSx SINE Alu -19 293 283 306 87 0 0 chr12 53904942 53904988 -89881467 + (TG)n Simple_repeat Simple_repeat 1 46 0 2141 102 0 3 chr12 53904988 53905270 -89881185 - AluSx SINE Alu -29 283 1 2365 137 54 24 chr12 53905270 53905306 -89881149 + MSTB LTR MaLR 388 421 -5 273 281 117 23 chr12 53905890 53906018 -89880437 + MIR SINE MIR 53 192 -70 1817 138 10 16 chr12 53906460 53906764 -89879691 + AluJo SINE Alu 9 310 -2 597 244 175 18 chr12 53906776 53907005 -89879450 - L1M4 LINE L1 -3012 3134 2870 207 290 0 58 chr12 53907019 53907088 -89879367 - L2 LINE L2 -2 3311 3247 257 333 68 8 chr12 53908269 53908386 -89878069 + L2 LINE L2 3144 3267 -5 246 307 0 50 chr12 53908440 53908541 -89877914 - L2 LINE L2 -10 3303 3208 407 230 141 22 chr12 53908611 53908746 -89877709 + MIR3 SINE MIR 53 203 -5 315 174 0 156 chr12 53908887 53908957 -89877498 + MIR SINE MIR 156 205 -57 2123 102 3 3 chr12 53908957 53909250 -89877205 + AluSx SINE Alu 10 302 -10 315 174 0 156 chr12 53909250 53909288 -89877167 + MIR SINE MIR 205 247 -15 273 333 31 22 chr12 53909892 53910029 -89876426 + L2 LINE L2 2968 3109 -204 2492 61 0 3 chr12 53910029 53910341 -89876114 - AluY SINE Alu 0 311 1 273 333 31 22 chr12 53910341 53910428 -89876027 + L2 LINE L2 3109 3194 -119 373 337 56 6 chr12 53910428 53910606 -89875849 - LTR33A LTR ERVL 0 523 337 1762 168 0 3 chr12 53910897 53911201 -89875254 - AluSx SINE Alu -8 304 2 1469 137 238 34 chr12 53911335 53911482 -89874973 + MSTD LTR MaLR 2 118 -278 2056 120 0 3 chr12 53911482 53911761 -89874694 + AluSc SINE Alu 1 280 -29 252 0 0 0 chr12 53911761 53911789 -89874666 + (CA)n Simple_repeat Simple_repeat 1 28 0 2056 120 0 3 chr12 53911789 53911801 -89874654 + AluSc SINE Alu 280 291 -18 1469 137 238 34 chr12 53911801 53911981 -89874474 + MSTD LTR MaLR 118 396 0 6747 218 81 42 chr12 53911982 53912606 -89873849 + MSTD-int LTR MaLR 1 600 -1135 2078 120 0 13 chr12 53912606 53912915 -89873540 + AluY SINE Alu 1 305 -6 6747 218 81 42 chr12 53912915 53913615 -89872840 + MSTD-int LTR MaLR 600 1405 -330 2135 128 0 0 chr12 53913615 53913912 -89872543 + AluSx SINE Alu 1 297 -15 6747 218 81 42 chr12 53913912 53914257 -89872198 + MSTD-int LTR MaLR 1405 1735 0 1840 179 55 26 chr12 53914257 53914422 -89872033 + MSTD LTR MaLR 1 160 -236 2364 55 3 3 chr12 53914422 53914713 -89871742 + AluY SINE Alu 1 291 -20 1840 179 55 26 chr12 53914713 53914928 -89871527 + MSTD LTR MaLR 160 392 -4 1055 248 73 47 chr12 53915082 53915368 -89871087 - L2 LINE L2 -3 3310 3033 2134 121 0 6 chr12 53915368 53915681 -89870774 + AluSx SINE Alu 1 311 -1 1055 248 73 47 chr12 53915681 53915897 -89870558 - L2 LINE L2 -280 3033 2755 393 244 0 59 chr12 53916105 53916224 -89870231 + L2 LINE L2 3144 3255 -17 576 150 9 26 chr12 53916845 53916958 -89869497 + FLAM_A SINE Alu 32 142 0 561 291 50 32 chr12 53917666 53917886 -89868569 + MIR SINE MIR 33 256 -6 369 62 0 0 chr12 53917975 53918023 -89868432 + (CA)n Simple_repeat Simple_repeat 1 48 0 2297 122 0 3 chr12 53918702 53919005 -89867450 + AluSx SINE Alu 1 302 -10 1896 126 7 18 chr12 53919027 53919312 -89867143 + AluJb SINE Alu 15 296 -16 434 208 8 67 chr12 53919726 53919846 -89866609 - MIR SINE MIR -60 148 36 401 351 67 13 chr12 53920237 53920378 -89866077 + L1ME4a LINE L1 5882 6041 -80 2175 123 0 7 chr12 53920378 53920687 -89865768 - AluSx SINE Alu -5 307 1 401 351 67 13 chr12 53920687 53920770 -89865685 + L1ME4a LINE L1 6041 6118 -3 228 135 0 0 chr12 53920847 53920884 -89865571 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 224 53 40 chr12 53923399 53923475 -89862980 + MIR SINE MIR 62 138 -70 214 298 0 0 chr12 53923815 53923872 -89862583 - L3 LINE CR1 -116 1461 1405 288 264 35 0 chr12 53923943 53924030 -89862425 - L3 LINE CR1 -203 1374 1285 375 60 0 0 chr12 53924036 53924086 -89862369 + (CA)n Simple_repeat Simple_repeat 1 50 0 683 237 86 0 chr12 53924616 53924802 -89861653 - MIR SINE MIR -49 213 12 475 256 19 26 chr12 53925943 53926099 -89860356 + MIR3 SINE MIR 33 187 -21 491 305 45 70 chr12 53928096 53928565 -89857890 - HAL1 LINE L1 -938 1569 1113 2300 112 0 6 chr12 53928749 53929061 -89857394 + AluSq SINE Alu 1 310 -3 707 253 60 57 chr12 53929609 53929633 -89856822 - HAL1 LINE L1 -4 2503 2481 1676 199 10 17 chr12 53929633 53929924 -89856531 + AluJo SINE Alu 1 289 -23 707 253 60 57 chr12 53929924 53930231 -89856224 - HAL1 LINE L1 -26 2481 2171 2720 265 80 73 chr12 53930336 53931952 -89854503 - HAL1 LINE L1 -542 1965 339 1109 211 175 55 chr12 53932108 53932183 -89854272 - LTR50 LTR ERVL -2 793 728 1796 178 3 0 chr12 53932183 53932469 -89853986 + AluJb SINE Alu 6 292 -20 1109 211 175 55 chr12 53932469 53933051 -89853404 - LTR50 LTR ERVL -67 728 1 252 301 0 0 chr12 53933249 53933322 -89853133 + L2 LINE L2 3195 3267 -5 384 316 114 34 chr12 53933667 53933904 -89852551 + MIR SINE MIR 6 261 -1 367 258 11 0 chr12 53934079 53934168 -89852287 + MER21B LTR ERV1 1 90 -773 983 236 135 8 chr12 53934190 53934449 -89852006 + MER21B LTR ERV1 19 310 -553 1522 259 75 37 chr12 53934570 53935142 -89851313 + MER21B LTR ERV1 216 809 -54 1851 167 3 7 chr12 53935209 53935503 -89850952 + AluJb SINE Alu 1 293 -19 493 255 11 32 chr12 53935762 53935886 -89850569 + L1MC4 LINE L1 6489 6609 -1433 744 55 27 0 chr12 53935886 53935996 -89850459 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 493 255 11 32 chr12 53935996 53936059 -89850396 + L1MC4 LINE L1 6609 6672 -1370 4474 193 60 26 chr12 53936253 53936532 -89849923 + L1MC4 LINE L1 6738 7006 -1036 1675 184 0 14 chr12 53936532 53936825 -89849630 + AluJo SINE Alu 23 311 -1 4474 193 60 26 chr12 53936825 53937735 -89848720 + L1MC4 LINE L1 7006 8035 -7 347 299 9 37 chr12 53938169 53938276 -89848179 - L1MC4 LINE L1 -1339 6703 6600 298 276 32 41 chr12 53938557 53938680 -89847775 + L2 LINE L2 3139 3260 -12 201 39 0 0 chr12 53938691 53938717 -89847738 + (TG)n Simple_repeat Simple_repeat 2 27 0 205 125 0 0 chr12 53939739 53939771 -89846684 - L2 LINE L2 -18 3254 3223 2283 99 0 7 chr12 53939999 53940293 -89846162 + AluSx SINE Alu 1 292 -20 724 164 0 0 chr12 53940296 53940412 -89846043 - AluJo/FLAM SINE Alu -195 117 2 311 279 6 50 chr12 53941942 53942103 -89844352 + GA-rich Low_complexity Low_complexity 1 154 0 203 281 0 16 chr12 53943215 53943279 -89843176 - MIR SINE MIR -59 149 87 204 332 84 51 chr12 53943603 53943817 -89842638 + L2 LINE L2 2712 2932 -382 250 336 30 30 chr12 53943936 53944067 -89842388 + L2 LINE L2 3167 3297 -16 698 326 32 0 chr12 53944686 53944907 -89841548 - MIR SINE MIR -15 247 20 405 194 20 10 chr12 53945167 53945265 -89841190 - MIR SINE MIR -117 145 47 390 225 104 40 chr12 53945534 53945707 -89840748 + MIR3 SINE MIR 21 204 -4 307 264 23 11 chr12 53946800 53946887 -89839568 + MIR SINE MIR 160 247 -15 201 74 0 0 chr12 53948365 53948392 -89838063 + (CA)n Simple_repeat Simple_repeat 2 28 0 253 308 204 17 chr12 53949652 53949824 -89836631 + MIR SINE MIR 47 250 -12 260 176 44 0 chr12 53950455 53950523 -89835932 + MER112 DNA MER1_type 17 87 -173 220 294 78 10 chr12 53950796 53950898 -89835557 - MIR SINE MIR -50 212 104 186 294 64 118 chr12 53950899 53951086 -89835369 - MIR SINE MIR -10 252 76 217 330 0 0 chr12 53952010 53952113 -89834342 + (CA)n Simple_repeat Simple_repeat 1 103 0 33 56 0 0 chr12 53953137 53953191 -89833264 + GC_rich Low_complexity Low_complexity 1 54 0 349 253 101 0 chr12 53954833 53954932 -89831523 - L2 LINE L2 0 3272 3164 797 134 39 0 chr12 53954956 53955083 -89831372 - FLAM_A SINE Alu -1 132 1 976 247 125 22 chr12 53955608 53956009 -89830446 + L2 LINE L2 1895 2336 -978 237 361 0 0 chr12 53956581 53956711 -89829744 + C-rich Low_complexity Low_complexity 1 130 0 24 53 0 0 chr12 53959639 53959677 -89826778 + AT_rich Low_complexity Low_complexity 1 38 0 282 179 0 0 chr12 53959855 53959911 -89826544 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 1510 173 38 0 chr12 53959923 53960212 -89826243 - L1MC1 LINE L1 -15 6318 6019 232 227 15 30 chr12 53960219 53960285 -89826170 - MER103 DNA DNA -73 93 29 310 222 86 0 chr12 53960943 53961024 -89825431 - LTR33A LTR ERVL -370 153 66 269 244 221 52 chr12 53961638 53961851 -89824604 + MIR SINE MIR 14 262 0 1785 168 7 3 chr12 53962068 53962365 -89824090 + AluSx SINE Alu 1 298 -14 325 247 40 69 chr12 53964361 53964634 -89821821 + L1PA10 LINE L1 5873 6135 -33 523 279 122 12 chr12 53966931 53967103 -89819352 - MIR SINE MIR -57 205 15 714 239 35 25 chr12 53967111 53967308 -89819147 - MIR SINE MIR 0 262 64 489 318 0 19 chr12 53967325 53967479 -89818976 - MIR3 SINE MIR -37 171 21 460 301 37 62 chr12 53968379 53968701 -89817754 - L2 LINE L2 -101 3212 2899 180 310 58 23 chr12 53969660 53969747 -89816708 + L2 LINE L2 3222 3311 -2 236 283 143 10 chr12 53971651 53971754 -89814701 + MIR SINE MIR 37 150 -62 435 262 57 8 chr12 53974558 53974680 -89811775 + MIR SINE MIR 35 162 -100 198 256 23 0 chr12 53974693 53974736 -89811719 + L2 LINE L2 3219 3262 -10 1773 185 0 3 chr12 53975207 53975509 -89810946 - AluJb SINE Alu -11 301 1 199 253 165 13 chr12 53975596 53975675 -89810780 - MIR SINE MIR -116 146 56 461 198 17 43 chr12 53977466 53977582 -89808873 - L2 LINE L2 -5 3308 3196 295 263 12 0 chr12 53978767 53978847 -89807608 - MIR SINE MIR -70 138 58 828 165 120 6 chr12 53979066 53979224 -89807231 - AluJb SINE Alu -1 311 136 216 214 202 0 chr12 53979778 53979862 -89806593 - L2 LINE L2 0 3272 3172 2138 147 0 3 chr12 53980312 53980618 -89805837 + AluJb SINE Alu 2 306 -6 10860 22 2 171 chr12 53981130 53982794 -89803661 + SVA Other Other 1 1383 -3 195 129 0 0 chr12 53982804 53982835 -89803620 + (A)n Simple_repeat Simple_repeat 1 31 0 183 208 57 19 chr12 53983562 53983615 -89802840 + L2 LINE L2 3215 3269 -3 283 284 14 0 chr12 53984323 53984397 -89802058 - MIR SINE MIR -105 157 83 325 347 40 0 chr12 53984517 53984641 -89801814 - L3 LINE CR1 -23 1554 1426 453 320 75 14 chr12 53984781 53985062 -89801393 - L3 LINE CR1 -507 1070 773 224 332 209 11 chr12 53986336 53986485 -89799970 + L3b LINE CR1 1356 1551 -32 2475 100 0 0 chr12 53986485 53986796 -89799659 - AluSx SINE Alu -1 311 1 224 332 209 11 chr12 53986796 53986833 -89799622 + L3b LINE CR1 1551 1579 -4 254 114 91 0 chr12 53986893 53986937 -89799518 - MLT2A2 LTR ERVL -405 48 1 369 268 0 0 chr12 53988257 53988384 -89798071 + (TG)n Simple_repeat Simple_repeat 1 127 0 549 191 167 19 chr12 53989021 53989183 -89797272 + MER5A DNA MER1_type 1 186 -3 307 275 194 37 chr12 53989571 53989979 -89796476 + L2 LINE L2 2781 3253 -60 378 266 189 0 chr12 53990986 53991129 -89795326 + MIR SINE MIR 23 192 -70 210 71 0 0 chr12 53991532 53991560 -89794895 + (T)n Simple_repeat Simple_repeat 1 28 0 767 259 37 45 chr12 53992563 53992797 -89793658 - MIR SINE MIR -4 258 25 1085 166 14 33 chr12 53992797 53993008 -89793447 + MER3 DNA MER1_type 2 208 -1 203 214 0 29 chr12 53993090 53993160 -89793295 + A-rich Low_complexity Low_complexity 5 72 0 351 0 0 0 chr12 53993208 53993247 -89793208 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 360 22 22 chr12 53994862 53994951 -89791504 - MIR SINE MIR -12 250 162 341 343 132 5 chr12 53994979 53995192 -89791263 - MIR SINE MIR -10 252 13 1020 211 62 36 chr12 53997452 53997756 -89788699 + MLT1C LTR MaLR 2 313 -154 575 160 88 24 chr12 53997871 53997996 -89788459 + MLT1C LTR MaLR 335 467 0 523 279 122 12 chr12 53999512 53999684 -89786771 - MIR SINE MIR -57 205 15 714 239 35 25 chr12 53999692 53999889 -89786566 - MIR SINE MIR 0 262 64 489 318 0 19 chr12 53999906 54000060 -89786395 - MIR3 SINE MIR -37 171 21 460 301 37 62 chr12 54000960 54001282 -89785173 - L2 LINE L2 -101 3212 2899 180 310 58 23 chr12 54002241 54002328 -89784127 + L2 LINE L2 3222 3311 -2 236 283 143 10 chr12 54004232 54004335 -89782120 + MIR SINE MIR 37 150 -62 435 262 57 8 chr12 54007143 54007265 -89779190 + MIR SINE MIR 35 162 -100 198 256 23 0 chr12 54007278 54007321 -89779134 + L2 LINE L2 3219 3262 -10 1773 185 0 3 chr12 54007792 54008094 -89778361 - AluJb SINE Alu -11 301 1 199 253 165 13 chr12 54008181 54008260 -89778195 - MIR SINE MIR -116 146 56 461 198 17 43 chr12 54010051 54010167 -89776288 - L2 LINE L2 -5 3308 3196 295 263 12 0 chr12 54011352 54011432 -89775023 - MIR SINE MIR -70 138 58 828 165 120 6 chr12 54011651 54011809 -89774646 - AluJb SINE Alu -1 311 136 216 214 202 0 chr12 54012362 54012446 -89774009 - L2 LINE L2 0 3272 3172 2138 147 0 3 chr12 54012896 54013202 -89773253 + AluJb SINE Alu 2 306 -6 347 195 171 0 chr12 54015565 54015647 -89770808 + MIR SINE MIR 54 149 -113 218 32 32 0 chr12 54015797 54015828 -89770627 + (CAA)n Simple_repeat Simple_repeat 2 33 0 243 161 0 54 chr12 54015909 54015965 -89770490 + L1M3c LINE L1 1356 1408 -6088 408 266 35 9 chr12 54015998 54016111 -89770344 + L1M3c LINE L1 2048 2163 -5402 1622 196 3 27 chr12 54016481 54016782 -89769673 + AluJb SINE Alu 7 300 -12 261 0 0 0 chr12 54017535 54017564 -89768891 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1581 183 11 8 chr12 54017603 54017865 -89768590 - AluJo SINE Alu -49 263 1 23 68 0 0 chr12 54017957 54018001 -89768454 + AT_rich Low_complexity Low_complexity 1 44 0 293 170 0 0 chr12 54018022 54018075 -89768380 - L1ME1 LINE L1 -6 6160 6108 2064 144 0 7 chr12 54018109 54018414 -89768041 - AluSx SINE Alu -9 303 1 845 258 88 44 chr12 54025017 54025586 -89760869 - L1MC5 LINE L1 -52 7909 7316 2346 108 0 0 chr12 54026267 54026574 -89759881 - AluSg SINE Alu -3 307 1 318 106 0 0 chr12 54027438 54027485 -89758970 + (CAT)n Simple_repeat Simple_repeat 2 48 0 226 264 66 0 chr12 54028015 54028106 -89758349 - L1MC5 LINE L1 -146 7815 7719 300 274 59 34 chr12 54028236 54028473 -89757982 - L1MC5 LINE L1 -402 7559 7317 1402 267 21 68 chr12 54028660 54029366 -89757089 - L1MC5 LINE L1 -730 7231 6558 273 55 455 0 chr12 54029377 54029432 -89757023 + MADE1 DNA Mariner 1 80 0 10542 143 26 11 chr12 54029548 54031657 -89754798 - L1P4 LINE L1 -494 5669 3533 2109 193 24 11 chr12 54031651 54031740 -89754715 - L1P4 LINE L1 -2871 3275 3189 * 2043 113 0 55 chr12 54031740 54032050 -89754405 - AluSx SINE Alu -19 293 1 2109 193 24 11 chr12 54032050 54032422 -89754033 - L1P4 LINE L1 -2957 3189 2808 1266 155 173 4 chr12 54032429 54032707 -89753748 + MER44D DNA MER2_type 226 605 0 290 288 0 0 chr12 54032718 54032791 -89753664 - MLT1F1 LTR MaLR -443 124 52 1289 218 31 23 chr12 54032796 54033150 -89753305 - L1MC3 LINE L1 -677 7108 6752 1595 201 28 79 chr12 54033150 54033579 -89752876 - MLT2D LTR ERVL -5 409 3 1037 200 211 11 chr12 54033598 54033883 -89752572 - L1MC3 LINE L1 -1040 6745 6404 946 214 0 0 chr12 54033992 54034179 -89752276 + L1PBa LINE L1 8 194 -6669 2284 137 49 0 chr12 54034185 54034550 -89751905 + L1PBa LINE L1 1001 1383 -5480 2283 131 3 0 chr12 54034550 54034885 -89751570 + L1PB1 LINE L1 5807 6142 -9 827 211 62 92 chr12 54034952 54035288 -89751167 + MLT2D LTR ERVL 41 366 -48 302 208 0 99 chr12 54035291 54035392 -89751063 + L1MC4 LINE L1 6613 6703 -1339 261 180 0 0 chr12 54035392 54035442 -89751013 + (TG)n Simple_repeat Simple_repeat 2 51 0 293 151 0 0 chr12 54035445 54035498 -89750957 + MLT2D LTR ERVL 464 516 -4 1397 209 16 32 chr12 54035501 54035817 -89750638 - L1MC3 LINE L1 -1378 6407 6097 5899 172 51 10 chr12 54035867 54037521 -89748934 + L1MC1 LINE L1 4600 6321 -12 2240 164 20 29 chr12 54037521 54037972 -89748483 + L1MA7 LINE L1 5841 6288 -3 5899 172 51 10 chr12 54037972 54037985 -89748470 + L1MC1 LINE L1 6321 6332 -1 257 200 60 0 chr12 54037992 54038042 -89748413 - L1MC3 LINE L1 -1672 6113 6061 3591 264 35 24 chr12 54038065 54039424 -89747031 - L1M4 LINE L1 -1476 4670 3296 2077 123 13 13 chr12 54040063 54040364 -89746091 - AluSx SINE Alu -11 301 1 334 255 82 61 chr12 54046680 54046911 -89739544 - L1MC5 LINE L1 -52 7909 7674 2115 122 0 7 chr12 54047102 54047405 -89739050 - AluSx SINE Alu -11 301 1 448 217 43 60 chr12 54047455 54047639 -89738816 - L1MC5 LINE L1 -465 7496 7316 2146 112 3 22 chr12 54047700 54048013 -89738442 + AluSx SINE Alu 1 307 -5 183 184 0 0 chr12 54048219 54048257 -89738198 + (TG)n Simple_repeat Simple_repeat 1 38 0 38 51 0 0 chr12 54048378 54048437 -89738018 + AT_rich Low_complexity Low_complexity 1 59 0 869 266 94 73 chr12 54049084 54049520 -89736935 + MLT2B1 LTR ERVL 20 464 -56 523 27 27 0 chr12 54049524 54049597 -89736858 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 189 0 0 0 chr12 54049636 54049657 -89736798 + (TG)n Simple_repeat Simple_repeat 2 22 0 2539 174 25 14 chr12 54049657 54050210 -89736245 + L1MC1 LINE L1 5135 5693 -640 2297 139 111 5 chr12 54050210 54050597 -89735858 + MSTA LTR MaLR 1 428 0 2539 174 25 14 chr12 54050597 54050636 -89735819 + L1MC1 LINE L1 5693 5730 -603 704 82 10 10 chr12 54050638 54050736 -89735719 + MER4A LTR ERV1 1 98 -566 1883 145 8 41 chr12 54050736 54051090 -89735365 + MER4A LTR ERV1 261 664 0 1902 180 37 3 chr12 54051090 54051468 -89734987 + L1MC1 LINE L1 5729 6119 -214 1481 179 14 4 chr12 54051471 54051750 -89734705 + L1MC1 LINE L1 6039 6320 -13 2060 124 55 25 chr12 54051752 54052116 -89734339 + THE1C LTR MaLR 1 375 0 6553 132 70 7 chr12 54052116 54053143 -89733312 + THE1C-int LTR MaLR 1 1092 -488 325 149 28 103 chr12 54053144 54053251 -89733204 + L1MA7 LINE L1 6187 6285 -6 229 220 60 0 chr12 54053271 54053321 -89733134 - L1MC3 LINE L1 -1672 6113 6061 3076 262 27 33 chr12 54053397 54053693 -89732762 - L1M4 LINE L1 -1538 4608 4312 1681 204 0 3 chr12 54053693 54054018 -89732437 + AluJb SINE Alu 1 312 0 3076 262 27 33 chr12 54054018 54054967 -89731488 - L1M4 LINE L1 -1834 4312 3370 9975 142 15 6 chr12 54054990 54057690 -89728765 - L1MA5A LINE L1 0 6297 3574 2807 166 40 2 chr12 54057690 54058268 -89728187 + L1MA5A LINE L1 2995 3594 -2552 411 277 45 7 chr12 54059027 54059182 -89727273 - L1ME LINE L1 -383 5738 5578 1256 142 73 18 chr12 54061626 54061727 -89724728 - MER30 DNA MER1_type 0 230 136 2154 110 0 7 chr12 54061727 54062018 -89724437 - AluSg SINE Alu -12 298 10 1256 142 73 18 chr12 54062018 54062030 -89724425 - MER30 DNA MER1_type -94 136 126 189 0 0 0 chr12 54062030 54062051 -89724404 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1256 142 73 18 chr12 54062051 54062154 -89724301 - MER30 DNA MER1_type -104 126 1 777 172 0 0 chr12 54067379 54067501 -89718954 + MER58B DNA MER1_type 220 341 0 506 292 79 0 chr12 54067501 54067703 -89718752 + MIR SINE MIR 17 234 -28 24 0 0 0 chr12 54069741 54069765 -89716690 + AT_rich Low_complexity Low_complexity 1 24 0 1968 152 0 23 chr12 54070077 54070380 -89716075 + AluJo SINE Alu 2 297 -15 772 224 0 33 chr12 54071895 54072078 -89714377 - AluJo SINE Alu -13 299 123 1746 264 35 6 chr12 54072096 54072641 -89713814 - L1ME2 LINE L1 -9 6155 5595 1227 184 34 26 chr12 54072660 54072927 -89713528 - L1MC1 LINE L1 0 6613 6345 3098 80 26 0 chr12 54072937 54073363 -89713092 - LTR3b LTR ERVK 0 437 1 9841 226 49 28 chr12 54073365 54073835 -89712620 - L1MC1 LINE L1 -268 6345 5887 2356 97 0 0 chr12 54073835 54074133 -89712322 - AluSg SINE Alu -12 298 1 9841 226 49 28 chr12 54074133 54076802 -89709653 - L1MC1 LINE L1 -726 5887 3277 2285 108 7 0 chr12 54076802 54077097 -89709358 - AluSg SINE Alu -13 297 1 9841 226 49 28 chr12 54077097 54078109 -89708346 - L1MC1 LINE L1 -3336 3277 2288 874 209 166 33 chr12 54078109 54078320 -89708135 - MER8 DNA MER2_type 0 239 1 9841 226 49 28 chr12 54078320 54080177 -89706278 - L1MC1 LINE L1 -4325 2288 1 941 159 16 16 chr12 54081011 54081200 -89705255 - MER53 DNA DNA 0 189 1 560 237 112 9 chr12 54081348 54081572 -89704883 - L1M4 LINE L1 -3250 2896 2650 219 114 45 0 chr12 54081600 54081644 -89704811 + (TA)n Simple_repeat Simple_repeat 2 47 0 1129 277 48 14 chr12 54081692 54082137 -89704318 - L1ME2 LINE L1 -992 5154 4690 4783 88 6 9 chr12 54082137 54082793 -89703662 - L1PA10 LINE L1 -1 6167 5514 1129 277 48 14 chr12 54082793 54082831 -89703624 - L1ME2 LINE L1 -1456 4690 4655 699 197 0 26 chr12 54082831 54082983 -89703472 - MLT1A2 LTR MaLR 0 374 227 265 192 192 13 chr12 54083060 54083138 -89703317 - MLT1A2 LTR MaLR -273 92 1 1419 261 76 3 chr12 54083138 54083743 -89702712 - L1ME2 LINE L1 -1487 4659 4011 1075 220 110 33 chr12 54083827 54084116 -89702339 + LTR52 LTR ERVL 28 352 -69 428 0 19 0 chr12 54084116 54084168 -89702287 + (TG)n Simple_repeat Simple_repeat 1 53 0 1075 220 110 33 chr12 54084168 54084242 -89702213 + LTR52 LTR ERVL 352 419 -2 2647 195 26 101 chr12 54084245 54084815 -89701640 + LTR52-int LTR ERVL 5 511 -3045 2136 115 3 3 chr12 54084815 54085119 -89701336 + AluSp SINE Alu 1 304 -9 2647 195 26 101 chr12 54085119 54085270 -89701185 + LTR52-int LTR ERVL 511 672 -2884 4408 224 33 18 chr12 54085435 54086890 -89699565 + LTR52-int LTR ERVL 972 2511 -1045 203 385 0 0 chr12 54087539 54087656 -89698799 + (CCG)n Simple_repeat Simple_repeat 2 118 0 240 316 0 0 chr12 54092367 54092484 -89693971 + (CCA)n Simple_repeat Simple_repeat 1 117 0 226 98 0 24 chr12 54095907 54095948 -89690507 - HSMAR1 DNA Mariner -1246 41 2 211 299 58 0 chr12 54096912 54096999 -89689456 + MIR SINE MIR 39 130 -132 252 297 0 0 chr12 54097422 54097486 -89688969 - MIR SINE MIR -6 256 193 683 234 156 9 chr12 54099588 54099806 -89686649 - MIR SINE MIR -3 259 10 508 300 85 45 chr12 54100626 54100849 -89685606 - MIR SINE MIR -16 246 15 1401 218 85 52 chr12 54101772 54102254 -89684201 + MLT1D LTR MaLR 1 498 -7 477 319 38 21 chr12 54104196 54104431 -89682024 - L3 LINE CR1 -128 1449 1211 348 261 19 25 chr12 54104615 54104772 -89681683 + MER113 DNA MER1_type? 2 157 -364 379 279 76 29 chr12 54105818 54105990 -89680465 + MIR SINE MIR 69 248 -14 422 221 58 16 chr12 54106180 54106364 -89680091 + MER115 DNA AcHobo 9 232 -461 446 216 14 79 chr12 54106441 54106580 -89679875 + MER115 DNA AcHobo 408 537 -156 457 235 0 73 chr12 54107114 54107250 -89679205 + MIR3 SINE MIR 68 193 -15 332 261 193 8 chr12 54107455 54107574 -89678881 - MIR3 SINE MIR -26 182 42 3314 216 29 34 chr12 54107871 54108273 -89678182 - MER63C DNA MER1_type -133 927 525 1121 209 101 7 chr12 54108273 54108569 -89677886 + MER33 DNA MER1_type 1 324 0 3314 216 29 34 chr12 54108569 54108950 -89677505 - MER63C DNA MER1_type -535 525 146 2512 67 0 0 chr12 54108950 54109247 -89677208 + AluY SINE Alu 1 297 -14 3314 216 29 34 chr12 54109247 54109349 -89677106 - MER63C DNA MER1_type -914 146 45 247 137 74 158 chr12 54109351 54109446 -89677009 - MER63C DNA MER1_type -843 87 1 235 171 0 0 chr12 54110490 54110531 -89675924 - MIR SINE MIR -4 258 218 270 81 0 0 chr12 54110564 54110601 -89675854 + (TTA)n Simple_repeat Simple_repeat 3 39 0 237 222 0 0 chr12 54110855 54110903 -89675552 - MIR SINE MIR -63 145 102 271 272 109 0 chr12 54114183 54114275 -89672180 + MIR SINE MIR 111 212 -50 325 284 18 18 chr12 54114317 54114426 -89672029 - MER117 DNA MER1_type -21 176 68 339 312 58 52 chr12 54114436 54114609 -89671846 - MER5B DNA MER1_type -3 175 2 192 250 106 48 chr12 54114969 54115073 -89671382 - L3b LINE CR1 -133 1450 1341 267 103 0 0 chr12 54115151 54115190 -89671265 + (CA)n Simple_repeat Simple_repeat 2 40 0 541 276 112 6 chr12 54117817 54117987 -89668468 + MIR3 SINE MIR 15 202 -6 275 255 13 75 chr12 54119386 54119540 -89666915 - MIR SINE MIR -6 256 63 599 178 86 10 chr12 54119547 54119718 -89666737 + MIR3 SINE MIR 15 195 -67 479 224 88 0 chr12 54119873 54119998 -89666457 - L2 LINE L2 -2 3311 3176 321 347 35 12 chr12 54122776 54122949 -89663506 - MIR SINE MIR -72 190 14 503 307 40 0 chr12 54124369 54124545 -89661910 - MIR SINE MIR -1 261 79 215 200 0 0 chr12 54124968 54125013 -89661442 - L3b LINE CR1 -198 1385 1341 311 299 16 16 chr12 54127018 54127145 -89659310 + CT-rich Low_complexity Low_complexity 2 128 0 4676 145 17 20 chr12 54127354 54127868 -89658587 + LTR39 LTR ERV1 1 513 -270 1750 64 0 13 chr12 54127868 54128104 -89658351 + L1PA8A LINE L1 5899 6131 0 4676 145 17 20 chr12 54128104 54128368 -89658087 + LTR39 LTR ERV1 513 776 -7 269 307 13 0 chr12 54128397 54128472 -89657983 - L2 LINE L2 -1 3271 3196 324 234 217 27 chr12 54129094 54129278 -89657177 + MIR SINE MIR 34 252 -10 2131 111 0 17 chr12 54129496 54129808 -89656647 + AluSx SINE Alu 1 307 0 464 274 17 37 chr12 54131741 54131967 -89654488 + MIR SINE MIR 20 232 -30 947 230 13 47 chr12 54131981 54132136 -89654319 - MIR SINE MIR -34 228 82 2347 106 0 0 chr12 54132136 54132429 -89654026 - AluSx SINE Alu -18 294 2 947 230 13 47 chr12 54132429 54132508 -89653947 - MIR SINE MIR -180 82 2 189 0 0 0 chr12 54133745 54133766 -89652689 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 220 257 191 9 chr12 54134107 54134212 -89652243 - L2 LINE L2 -17 3255 3132 4700 166 21 15 chr12 54134814 54135325 -89651130 - L1MB5 LINE L1 0 6174 5668 1511 165 15 102 chr12 54135325 54135659 -89650796 - AluJo SINE Alu -7 305 1 4700 166 21 15 chr12 54135659 54136471 -89649984 - L1MB5 LINE L1 -506 5668 4843 970 187 64 26 chr12 54137566 54137816 -89648639 + Tigger4(Zombi) DNA MER2_type 1 2731 0 245 346 134 0 chr12 54138613 54138792 -89647663 + MIR SINE MIR 60 262 0 222 310 115 0 chr12 54139755 54139842 -89646613 - L2 LINE L2 -13 3259 3163 300 370 36 7 chr12 54140215 54140353 -89646102 - MIR SINE MIR -58 204 63 433 283 51 7 chr12 54141985 54142123 -89644332 + MIR3 SINE MIR 43 186 -22 261 253 162 10 chr12 54144094 54144193 -89642262 - MIR SINE MIR -77 131 18 196 360 124 6 chr12 54146821 54146982 -89639473 + L3 LINE CR1 1383 1562 -15 2213 134 0 0 chr12 54147281 54147579 -89638876 + AluSx SINE Alu 1 298 -14 362 279 259 5 chr12 54148361 54148558 -89637897 - MIR SINE MIR -10 252 6 207 77 26 51 chr12 54150402 54150419 -89636036 + (GAAA)n Simple_repeat Simple_repeat 2 18 -21 2329 108 3 0 chr12 54150419 54150725 -89635730 + AluSq SINE Alu 1 307 -6 207 77 26 51 chr12 54150725 54150746 -89635709 + (GAAA)n Simple_repeat Simple_repeat 18 39 0 370 256 0 44 chr12 54151245 54151335 -89635120 + MER81 DNA DNA 1 86 -28 532 224 154 0 chr12 54152014 54152170 -89634285 - MER91A DNA MER1_type -16 180 1 534 255 21 7 chr12 54154306 54154451 -89632004 - MIR SINE MIR -24 238 92 190 224 94 106 chr12 54155058 54155143 -89631312 + L2 LINE L2 3025 3108 -164 580 238 44 125 chr12 54155984 54156232 -89630223 + MIR SINE MIR 20 247 -15 191 268 195 0 chr12 54156266 54156348 -89630107 - MIR SINE MIR -158 104 7 258 280 68 17 chr12 54156730 54156848 -89629607 + MIR SINE MIR 30 153 -55 208 309 21 10 chr12 54156994 54157091 -89629364 - L2 LINE L2 -298 2974 2877 339 113 0 0 chr12 54157235 54157288 -89629167 + (CA)n Simple_repeat Simple_repeat 2 54 0 439 242 159 22 chr12 54157319 54157501 -89628954 + L2 LINE L2 3101 3307 -6 222 175 0 35 chr12 54159009 54159066 -89627389 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 1721 106 0 55 chr12 54160838 54161130 -89625325 + L1PA10 LINE L1 5889 6164 -4 29 0 0 25 chr12 54161130 54161156 -89625299 + AT_rich Low_complexity Low_complexity 1 27 -12 2102 111 3 14 chr12 54161156 54161444 -89625011 + AluSx SINE Alu 1 285 -27 29 0 0 25 chr12 54161444 54161457 -89624998 + AT_rich Low_complexity Low_complexity 27 39 0 189 0 0 0 chr12 54161457 54161478 -89624977 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 243 125 0 0 chr12 54162426 54162466 -89623989 + (TG)n Simple_repeat Simple_repeat 2 41 0 291 140 0 0 chr12 54163801 54163851 -89622604 + (CA)n Simple_repeat Simple_repeat 2 51 0 258 358 46 9 chr12 54164605 54164714 -89621741 + L2 LINE L2 3143 3255 -17 4906 233 80 53 chr12 54165485 54166070 -89620385 + Charlie2a DNA MER1_type 5 573 -2289 2045 163 9 44 chr12 54166070 54166505 -89619950 + L1MB3 LINE L1 5760 6179 -4 4906 233 80 53 chr12 54166505 54166635 -89619820 + Charlie2a DNA MER1_type 573 698 -2164 4281 61 14 3 chr12 54166635 54167206 -89619249 + L1PA5 LINE L1 5577 6153 -1 4906 233 80 53 chr12 54167206 54168458 -89617997 + Charlie2a DNA MER1_type 698 2026 -836 233 195 241 75 chr12 54168458 54168632 -89617823 - L2 LINE L2 -2 3311 3109 1790 264 87 37 chr12 54168635 54168983 -89617472 + Charlie2a DNA MER1_type 2025 2354 -508 1954 135 7 3 chr12 54168983 54169272 -89617183 - AluSx SINE Alu -2 310 21 1790 264 87 37 chr12 54169272 54169704 -89616751 + Charlie2a DNA MER1_type 2354 2844 -18 837 252 48 5 chr12 54169927 54170137 -89616318 - MIR SINE MIR -6 256 38 219 333 42 63 chr12 54170145 54170382 -89616073 - MIR SINE MIR 0 262 31 181 224 82 0 chr12 54170560 54170609 -89615846 + L2 LINE L2 3134 3186 -86 214 250 171 23 chr12 54172286 54172374 -89614081 + MIR SINE MIR 92 192 -70 2675 86 0 11 chr12 54172871 54173230 -89613225 + THE1A LTR MaLR 1 355 0 702 235 62 11 chr12 54173235 54173414 -89613041 - MIR SINE MIR -14 248 61 227 227 15 30 chr12 54176274 54176340 -89610115 + MER103 DNA DNA 29 93 -73 1640 172 35 0 chr12 54176347 54176637 -89609818 + L1MC1 LINE L1 6019 6318 -15 282 179 0 0 chr12 54176649 54176705 -89609750 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 24 53 0 0 chr12 54176883 54176921 -89609534 + AT_rich Low_complexity Low_complexity 1 38 0 654 246 116 55 chr12 54177421 54177766 -89608689 + MLT1J2 LTR MaLR 70 435 -15 810 241 32 32 chr12 54177944 54178164 -89608291 - MIR SINE MIR -12 250 31 521 286 74 62 chr12 54178341 54178666 -89607789 + L2 LINE L2 2935 3263 -9 320 370 95 0 chr12 54178874 54179063 -89607392 - MIR SINE MIR -7 255 49 223 351 0 9 chr12 54179456 54179570 -89606885 + (CATA)n Simple_repeat Simple_repeat 1 113 0 234 185 71 75 chr12 54182065 54182134 -89604321 + MIR SINE MIR 69 143 -82 929 247 52 71 chr12 54182147 54182489 -89603966 + MER113 DNA MER1_type? 1 335 -186 2170 125 0 3 chr12 54182489 54182818 -89603637 - AluSx SINE Alu 0 312 1 929 247 52 71 chr12 54182818 54182913 -89603542 + MER113 DNA MER1_type? 335 430 -91 514 297 105 60 chr12 54184098 54184546 -89601909 + L2 LINE L2 2805 3272 0 327 306 37 0 chr12 54185209 54185317 -89601138 + MIR SINE MIR 30 141 -67 241 291 34 43 chr12 54187236 54187353 -89599102 + MIR3 SINE MIR 41 156 -52 290 262 79 79 chr12 54189316 54189480 -89596975 + L2 LINE L2 2624 2787 -527 183 308 147 13 chr12 54189584 54189740 -89596715 + L2 LINE L2 2937 3113 -159 1090 172 16 0 chr12 54189745 54189931 -89596524 - MER5A DNA MER1_type 0 189 1 208 300 50 12 chr12 54191760 54191840 -89594615 - MIR SINE MIR -68 194 112 246 276 0 0 chr12 54191994 54192052 -89594403 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 275 269 0 0 chr12 54192054 54192121 -89594334 - L2 LINE L2 0 3272 3206 2258 103 33 0 chr12 54192543 54192845 -89593610 - AluSp SINE Alu -1 312 1 234 191 0 0 chr12 54193719 54193766 -89592689 + GA-rich Low_complexity Low_complexity 2 48 0 2253 222 50 29 chr12 54193888 54194761 -89591694 + L1MD1 LINE L1 107 1320 -5220 23 0 0 0 chr12 54194761 54194784 -89591671 + AT_rich Low_complexity Low_complexity 1 23 0 5848 189 69 18 chr12 54195232 54197130 -89589325 + L1MD1 LINE L1 1307 3311 -3229 450 190 10 10 chr12 54197131 54197231 -89589224 - MLT1B LTR MaLR -290 100 1 3986 199 32 33 chr12 54197287 54198555 -89587900 + L1MD1 LINE L1 5242 6505 -131 746 206 169 0 chr12 54198606 54198795 -89587660 - MIR SINE MIR -30 232 12 196 336 45 9 chr12 54198801 54198911 -89587544 - MER5B DNA MER1_type -39 139 26 469 241 62 37 chr12 54198982 54199144 -89587311 - MLT1J LTR MaLR -343 168 3 537 248 9 0 chr12 54199246 54199359 -89587096 + MER81 DNA DNA 1 114 0 244 221 26 65 chr12 54199469 54199546 -89586909 - L2 LINE L2 -1 3312 3239 255 296 224 44 chr12 54199563 54199813 -89586642 + L2 LINE L2 2978 3272 0 204 222 0 0 chr12 54200344 54200380 -89586075 + (TG)n Simple_repeat Simple_repeat 1 36 0 209 237 44 111 chr12 54201897 54202032 -89584423 - MIR SINE MIR -118 144 19 2544 195 44 0 chr12 54204006 54204458 -89581997 + MER70A LTR ERVL 1 472 0 2164 128 3 0 chr12 54205395 54205692 -89580763 + AluSx SINE Alu 1 298 -14 444 224 109 138 chr12 54207585 54207969 -89578486 + L1ME4a LINE L1 5743 6115 -6 2447 110 21 8 chr12 54208029 54208401 -89578054 + L1PB1 LINE L1 5771 6147 -4 315 259 152 9 chr12 54208858 54208970 -89577485 + MIR SINE MIR 36 163 -99 198 103 0 0 chr12 54209098 54209127 -89577328 + (CAG)n Simple_repeat Simple_repeat 1 29 0 690 292 27 9 chr12 54209134 54209353 -89577102 - MIR SINE MIR -12 250 28 325 273 0 0 chr12 54210180 54210246 -89576209 - MER91 DNA MER1_type 0 196 131 5060 238 46 19 chr12 54210246 54210307 -89576148 + L1ME2 LINE L1 3723 3781 -2381 1886 138 0 0 chr12 54210307 54210588 -89575867 + AluSc SINE Alu 38 318 0 5060 238 46 19 chr12 54210588 54212280 -89574175 + L1ME2 LINE L1 3781 5519 -643 331 284 124 32 chr12 54212282 54212500 -89573955 + L1ME2 LINE L1 5924 6161 -3 1278 239 80 55 chr12 54212751 54213040 -89573415 - L1M4 LINE L1 -1896 4250 3970 192 40 0 0 chr12 54213040 54213065 -89573390 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1278 239 80 55 chr12 54213065 54213330 -89573125 - L1M4 LINE L1 -2176 3970 3674 360 0 0 0 chr12 54213330 54213370 -89573085 + (TA)n Simple_repeat Simple_repeat 2 41 0 1278 239 80 55 chr12 54213370 54213488 -89572967 - L1M4 LINE L1 -2472 3674 3560 446 250 50 44 chr12 54213585 54213765 -89572690 - MIR SINE MIR 0 262 82 389 339 17 35 chr12 54213864 54214038 -89572417 + MER5A DNA MER1_type 1 171 -18 420 247 58 52 chr12 54214354 54214508 -89571947 - MIR3 SINE MIR -21 187 33 2299 110 3 0 chr12 54215192 54215492 -89570963 + AluSx SINE Alu 1 301 -11 291 333 0 6 chr12 54224181 54224358 -89562097 + (CCA)n Simple_repeat Simple_repeat 3 178 0 180 77 0 0 chr12 54224529 54224555 -89561900 + (TCC)n Simple_repeat Simple_repeat 2 27 0 330 310 103 0 chr12 54225640 54225756 -89560699 + MIR SINE MIR 19 146 -116 434 333 72 10 chr12 54225974 54226169 -89560286 + MIR SINE MIR 46 252 -10 259 255 142 0 chr12 54229929 54230035 -89556420 + MIR3 SINE MIR 34 154 -54 285 291 93 12 chr12 54230112 54230198 -89556257 + MIR3 SINE MIR 98 190 -18 265 109 0 0 chr12 54232984 54233030 -89553425 - MADE1 DNA Mariner -34 46 1 544 259 42 14 chr12 54233082 54233225 -89553230 + MIR SINE MIR 9 155 -107 1301 138 35 24 chr12 54233225 54233479 -89552976 - Tigger2 DNA MER2_type -11 2707 2451 4428 129 27 9 chr12 54233532 54234276 -89552179 - Tigger2 DNA MER2_type -1959 759 3 344 259 23 80 chr12 54234821 54235029 -89551426 - MIR3 SINE MIR -57 205 9 203 395 101 0 chr12 54235116 54235245 -89551210 - MIR3 SINE MIR -25 183 42 231 375 50 0 chr12 54236500 54236620 -89549835 - L2 LINE L2 -1 3271 3146 558 291 0 0 chr12 54236625 54236759 -89549696 + MER63A DNA MER1_type 77 210 0 183 405 23 46 chr12 54236791 54236964 -89549491 - L2 LINE L2 -212 3060 2892 435 171 0 0 chr12 54238541 54238611 -89547844 + FRAM/FAM SINE Alu 1 69 -107 233 320 131 11 chr12 54238962 54239137 -89547318 - L3 LINE CR1 -47 1530 1335 1615 185 7 24 chr12 54239205 54239586 -89546869 + AluJb SINE Alu 1 376 0 594 146 32 32 chr12 54239586 54239744 -89546711 + GA-rich Low_complexity Low_complexity 3 160 0 219 326 52 22 chr12 54239753 54239888 -89546567 - L3 LINE CR1 -375 1202 1064 250 309 79 29 chr12 54240679 54240818 -89545637 + L2 LINE L2 2013 2158 -1156 276 111 0 0 chr12 54240962 54241007 -89545448 + (CA)n Simple_repeat Simple_repeat 2 46 0 1156 258 60 27 chr12 54241093 54241378 -89545077 + MER20B DNA MER1_type 32 306 -477 205 26 53 26 chr12 54241378 54241416 -89545039 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1156 258 60 27 chr12 54241416 54241773 -89544682 + MER20B DNA MER1_type 306 767 -16 2319 117 0 0 chr12 54242567 54242867 -89543588 + AluSq SINE Alu 5 304 -9 181 322 0 0 chr12 54243442 54243501 -89542954 + L2 LINE L2 2196 2254 -1060 346 286 81 88 chr12 54243605 54243902 -89542553 + L2 LINE L2 2466 2760 -554 209 308 33 22 chr12 54244127 54244218 -89542237 + L2 LINE L2 2762 2853 -461 184 383 93 0 chr12 54244257 54244364 -89542091 + L2 LINE L2 2918 3034 -238 320 297 93 17 chr12 54244426 54244544 -89541911 + L2 LINE L2 3146 3272 0 206 326 11 11 chr12 54245365 54245454 -89541001 - MIR SINE MIR -108 154 66 2220 209 12 52 chr12 54245562 54246078 -89540377 - LTR42 LTR ERVL 0 495 1 291 54 0 0 chr12 54246341 54246378 -89540077 + (CAT)n Simple_repeat Simple_repeat 3 39 0 791 284 84 13 chr12 54246381 54246620 -89539835 - MIR SINE MIR -6 256 1 537 311 0 0 chr12 54247766 54247943 -89538512 + (CCG)n Simple_repeat Simple_repeat 2 178 0 213 366 0 0 chr12 54247920 54248032 -89538423 + (CCA)n Simple_repeat Simple_repeat 3 114 0 * 435 217 0 0 chr12 54252376 54252533 -89533922 + (CCA)n Simple_repeat Simple_repeat 3 159 0 192 135 0 0 chr12 54252607 54252644 -89533811 + (CCA)n Simple_repeat Simple_repeat 3 39 0 857 263 48 20 chr12 54253822 54254073 -89532382 - MIR SINE MIR -1 261 4 195 250 250 0 chr12 54254140 54254236 -89532219 + L2 LINE L2 3145 3264 -8 232 305 0 0 chr12 54255041 54255100 -89531355 + (TG)n Simple_repeat Simple_repeat 1 59 0 296 327 26 39 chr12 54255342 54255495 -89530960 - MIR SINE MIR -78 184 34 188 278 72 41 chr12 54255573 54255670 -89530785 - MIR3 SINE MIR -4 204 105 207 0 0 0 chr12 54255670 54255693 -89530762 + (A)n Simple_repeat Simple_repeat 1 23 0 347 320 105 0 chr12 54256012 54256165 -89530290 - MIR SINE MIR -72 190 22 289 196 185 11 chr12 54257330 54257422 -89529033 + MIR SINE MIR 38 145 -117 2252 80 0 7 chr12 54257492 54257781 -89528674 + AluY SINE Alu 14 300 -11 316 220 265 0 chr12 54259705 54259837 -89526618 - L3 LINE CR1 -75 1502 1336 238 329 77 39 chr12 54260173 54260380 -89526075 - L3 LINE CR1 -259 1318 1104 362 298 0 0 chr12 54261417 54261501 -89524954 + L2 LINE L2 3230 3313 0 735 172 0 0 chr12 54261662 54261778 -89524677 + AluJb SINE Alu 3 118 -194 204 106 21 43 chr12 54261781 54261828 -89524627 + (GAA)n Simple_repeat Simple_repeat 3 48 0 847 127 6 23 chr12 54261829 54262002 -89524453 + (GGA)n Simple_repeat Simple_repeat 2 171 0 219 69 0 0 chr12 54262007 54262036 -89524419 + (GAA)n Simple_repeat Simple_repeat 2 30 0 550 262 6 22 chr12 54263664 54263847 -89522608 + (CCG)n Simple_repeat Simple_repeat 1 180 0 1579 132 0 0 chr12 54266275 54266495 -89519960 + AluSg/x SINE Alu 85 304 -6 608 297 42 34 chr12 54266540 54266779 -89519676 + MIR SINE MIR 12 252 -10 489 163 0 0 chr12 54266780 54266860 -89519595 + MADE1 DNA Mariner 1 80 0 504 243 34 68 chr12 54267569 54267717 -89518738 + MIR SINE MIR 23 165 -97 180 361 42 0 chr12 54268344 54268416 -89518039 + MIR SINE MIR 68 142 -66 443 310 65 43 chr12 54269486 54269565 -89516890 - MIR SINE MIR -1 261 185 811 209 87 0 chr12 54269565 54269737 -89516718 + MER5A DNA MER1_type 1 187 -2 443 310 65 43 chr12 54269737 54269889 -89516566 - MIR SINE MIR -77 185 25 224 184 0 0 chr12 54269967 54270005 -89516450 - MER91B DNA MER1_type -131 59 22 327 314 114 35 chr12 54272086 54272341 -89514114 + L2 LINE L2 2968 3242 -30 1087 273 118 22 chr12 54272613 54273019 -89513436 - L2 LINE L2 -18 3295 2851 696 211 123 6 chr12 54273181 54273352 -89513103 - L2 LINE L2 -498 2816 2626 300 54 0 0 chr12 54274495 54274532 -89511923 + U6 snRNA snRNA 1 37 -70 373 268 100 68 chr12 54274550 54274770 -89511685 + L2 LINE L2 3043 3269 -3 475 224 0 13 chr12 54274772 54274835 -89511620 + (TGGA)n Simple_repeat Simple_repeat 1 63 -91 246 62 0 0 chr12 54274835 54274867 -89511588 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 224 0 13 chr12 54274867 54274959 -89511496 + (TGGA)n Simple_repeat Simple_repeat 63 154 0 336 24 0 0 chr12 54274957 54274998 -89511457 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 242 109 43 0 chr12 54275012 54275058 -89511397 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 188 277 0 21 chr12 54275300 54275347 -89511108 - L2 LINE L2 -94 3178 3133 778 224 62 55 chr12 54276683 54276973 -89509482 - MER5C DNA MER1_type -30 294 3 2020 130 0 26 chr12 54277304 54277611 -89508844 + AluJb SINE Alu 1 299 -13 1444 137 9 5 chr12 54277688 54277907 -89508548 - AluSg/x SINE Alu -3 309 90 212 278 133 11 chr12 54278292 54278382 -89508073 + MIR SINE MIR 92 192 -70 2472 111 0 11 chr12 54278879 54279238 -89507217 + THE1A LTR MaLR 1 355 0 1405 143 99 0 chr12 54281402 54281675 -89504780 - MER52C LTR ERV1 -317 961 662 3141 29 5 0 chr12 54281675 54282058 -89504397 - L1P LINE L1 -1869 4277 3893 6248 24 1 1 chr12 54282058 54282772 -89503683 + L1PA4 LINE L1 5424 6142 -13 690 218 11 53 chr12 54282840 54283028 -89503427 + L1ME1 LINE L1 5932 6111 -55 245 273 8 70 chr12 54282917 54283034 -89503421 + L1MA10 LINE L1 6167 6277 -57 * 1845 179 11 0 chr12 54283034 54283319 -89503136 + AluJb SINE Alu 5 292 -20 2489 70 0 3 chr12 54283369 54283667 -89502788 - AluY SINE Alu -13 298 2 1151 207 120 50 chr12 54283688 54284205 -89502250 + L1MC5 LINE L1 7361 7913 -48 781 330 200 16 chr12 54284378 54284959 -89501496 + L3 LINE CR1 679 1366 -211 216 352 38 9 chr12 54284994 54285099 -89501356 + L3 LINE CR1 1459 1566 -11 187 286 26 13 chr12 54285148 54285225 -89501230 - MIR SINE MIR -3 259 182 634 247 30 24 chr12 54286154 54286320 -89500135 + MIR SINE MIR 3 169 -93 6613 144 40 16 chr12 54286330 54287551 -89498904 + MER52C LTR ERV1 29 1278 0 246 258 61 0 chr12 54287552 54287618 -89498837 + MIR SINE MIR 167 236 -26 1981 120 0 4 chr12 54288279 54288546 -89497909 + AluSg SINE Alu 1 266 -44 1028 81 12 12 chr12 54288566 54288738 -89497717 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 1242 45 11 22 chr12 54288764 54288943 -89497512 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 199 299 90 0 chr12 54289908 54289975 -89496480 + L3b LINE CR1 1311 1383 -200 1723 183 10 7 chr12 54290232 54290522 -89495933 - AluJo SINE Alu -21 291 1 1933 145 3 23 chr12 54292138 54292441 -89494014 + AluSx SINE Alu 1 297 -15 182 301 36 48 chr12 54292547 54292630 -89493825 - MER5B DNA MER1_type -40 138 57 225 146 0 24 chr12 54292634 54292675 -89493780 + MER31B LTR ERV1 37 76 -390 2303 96 3 3 chr12 54296653 54296945 -89489510 - AluSc SINE Alu -17 292 1 491 266 114 13 chr12 54297304 54297462 -89488993 - MER5B DNA MER1_type -3 175 2 311 242 63 0 chr12 54299593 54299688 -89486767 + L2 LINE L2 3164 3264 -8 26 0 0 0 chr12 54300467 54300493 -89485962 + AT_rich Low_complexity Low_complexity 1 26 0 202 298 48 24 chr12 54300943 54301027 -89485428 - L2 LINE L2 -217 3055 2970 213 328 15 0 chr12 54301487 54301554 -89484901 + L3 LINE CR1 1509 1576 -1 458 276 48 0 chr12 54301923 54302028 -89484427 - L2 LINE L2 0 3272 3163 525 346 15 0 chr12 54303163 54303299 -89483156 + MER91A DNA MER1_type 4 141 -55 214 295 115 13 chr12 54303324 54303402 -89483053 + MER91A DNA MER1_type 86 171 -25 400 265 284 6 chr12 54303542 54303704 -89482751 + MIR SINE MIR 54 260 -2 479 222 108 54 chr12 54304843 54305028 -89481427 - LTR16A LTR ERVL 0 450 256 6725 124 20 20 chr12 54305336 54306408 -89480047 - MER11C LTR ERVK 0 1071 1 265 381 58 0 chr12 54306777 54306932 -89479523 - L3 LINE CR1 -374 1203 1040 570 309 143 22 chr12 54307171 54307666 -89478789 + L1ME4a LINE L1 5265 5819 -302 438 287 42 28 chr12 54310783 54310926 -89475529 + L2 LINE L2 3169 3313 0 394 286 165 40 chr12 54310942 54311166 -89475289 + L1ME4a LINE L1 5869 6120 -1 241 415 0 0 chr12 54314328 54314450 -89472005 + (CCG)n Simple_repeat Simple_repeat 1 125 -27 204 40 0 0 chr12 54314450 54314475 -89471980 + (CTG)n Simple_repeat Simple_repeat 3 27 0 241 415 0 0 chr12 54314475 54314504 -89471951 + (CCG)n Simple_repeat Simple_repeat 124 152 0 201 270 107 25 chr12 54314600 54314701 -89471754 + MIR SINE MIR 21 127 -81 2204 112 10 3 chr12 54315568 54315864 -89470591 + AluSp SINE Alu 1 298 -15 308 197 16 0 chr12 54316311 54316372 -89470083 + MER81 DNA DNA 53 114 0 309 310 49 49 chr12 54316672 54316814 -89469641 + MIR SINE MIR 13 154 -108 1870 100 88 4 chr12 54316820 54317081 -89469374 + AluSx SINE Alu 4 286 -26 210 273 15 0 chr12 54318260 54318326 -89468129 + L3b LINE CR1 1316 1382 -201 670 205 84 12 chr12 54318416 54318582 -89467873 - MER5B DNA MER1_type 0 178 1 470 360 44 9 chr12 54318665 54318890 -89467565 - MIR SINE MIR -1 261 29 250 314 71 14 chr12 54319474 54319622 -89466833 - MIR3 SINE MIR -52 156 28 201 196 0 0 chr12 54320086 54320137 -89466318 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 410 103 250 0 chr12 54320140 54320208 -89466247 - AluSg/x SINE Alu -49 261 177 205 232 36 18 chr12 54320388 54320444 -89466011 - MIR SINE MIR -112 96 40 229 294 284 10 chr12 54320594 54320798 -89465657 - MIR SINE MIR -2 260 1 730 308 40 4 chr12 54320829 54321056 -89465399 + MIR SINE MIR 28 262 0 710 100 23 39 chr12 54321381 54321511 -89464944 - L1MA9 LINE L1 -271 6041 5914 984 124 96 39 chr12 54321520 54321698 -89464757 - AluSg/x SINE Alu -2 308 121 2121 144 8 16 chr12 54321701 54322075 -89464380 - L1MA9 LINE L1 -420 5892 5522 599 151 12 139 chr12 54322071 54322190 -89464265 + L1M2 LINE L1 5393 5487 -825 * 3425 55 0 0 chr12 54322190 54322624 -89463831 + L1PA5 LINE L1 5716 6153 -1 599 151 12 139 chr12 54322624 54322670 -89463785 + L1M2 LINE L1 5487 5537 -775 200 167 0 0 chr12 54323126 54323156 -89463299 + G-rich Low_complexity Low_complexity 3 32 0 844 186 0 0 chr12 54323921 54324082 -89462373 - FRAM SINE Alu -3 163 3 517 309 86 21 chr12 54326688 54326921 -89459534 - MIR SINE MIR 0 262 15 1053 121 22 82 chr12 54327188 54327420 -89459035 - MER20 DNA MER1_type -1 218 1 250 136 23 0 chr12 54329146 54329190 -89457265 - L2 LINE L2 -5 3267 3223 273 270 0 0 chr12 54329679 54329742 -89456713 - L2 LINE L2 -6 3266 3204 2075 145 0 0 chr12 54329866 54330156 -89456299 - AluJb SINE Alu -22 290 1 303 49 0 0 chr12 54333238 54333279 -89453176 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 243 271 0 chr12 54333494 54333601 -89452854 + MIR3 SINE MIR 24 159 -49 1934 158 7 0 chr12 54334807 54335104 -89451351 - AluSx SINE Alu -13 299 1 446 284 94 8 chr12 54335553 54335738 -89450717 - MIR SINE MIR -20 242 29 238 335 65 59 chr12 54336840 54337162 -89449293 - L2 LINE L2 0 3272 2949 434 266 26 14 chr12 54337333 54337474 -89448981 + MER5B DNA MER1_type 19 168 -21 1191 62 0 0 chr12 54337724 54337884 -89448571 + L1PA4 LINE L1 5995 6154 -1 1140 219 27 38 chr12 54337932 54338297 -89448158 + L1ME2 LINE L1 5188 6155 -9 27 49 0 0 chr12 54338641 54338682 -89447773 + AT_rich Low_complexity Low_complexity 1 41 0 887 254 107 36 chr12 54338781 54339473 -89446982 + L1ME LINE L1 4993 5727 -439 213 241 19 0 chr12 54344691 54344745 -89441710 + L2 LINE L2 3237 3291 -22 2336 116 0 0 chr12 54345337 54345638 -89440817 - AluSq SINE Alu -8 305 5 291 306 27 7 chr12 54396767 54396914 -89389541 - MER103 DNA DNA -1 165 16 300 336 56 8 chr12 54397455 54397580 -89388875 + MIR SINE MIR 34 164 -98 191 305 85 24 chr12 54397759 54397841 -89388614 - L2 LINE L2 0 3272 3186 518 191 0 0 chr12 54398042 54398136 -89388319 - Charlie4 DNA MER1_type 0 1961 1868 299 286 0 13 chr12 54398183 54398260 -89388195 + MIR SINE MIR 45 120 -88 1216 169 16 16 chr12 54398266 54398509 -89387946 + THE1A LTR MaLR 3 245 -110 1184 116 0 0 chr12 54398613 54398768 -89387687 + AluSg/x SINE Alu 154 308 -4 198 0 0 0 chr12 54398769 54398791 -89387664 + (GGAGAA)n Simple_repeat Simple_repeat 4 25 0 1988 147 10 3 chr12 54398792 54399099 -89387356 + AluSx SINE Alu 1 309 -3 599 154 0 62 chr12 54399101 54399200 -89387255 + L1M4 LINE L1 4697 4788 -1358 2248 101 0 10 chr12 54399200 54399496 -89386959 + AluSp SINE Alu 1 293 -20 599 154 0 62 chr12 54399496 54399526 -89386929 + L1M4 LINE L1 4788 4818 -1328 286 113 0 0 chr12 54399560 54399613 -89386842 + AluSp/q SINE Alu 248 300 -3 1659 119 13 4 chr12 54399615 54399842 -89386613 + AluSq SINE Alu 1 229 -84 222 149 21 0 chr12 54400489 54400536 -89385919 + T-rich Low_complexity Low_complexity 2 49 0 190 384 105 0 chr12 54401587 54401673 -89384782 + MIR SINE MIR 1 95 -167 831 181 72 0 chr12 54401687 54401853 -89384602 + MER20 DNA MER1_type 40 217 -2 211 339 0 0 chr12 54401960 54402022 -89384433 - L2 LINE L2 -6 3307 3246 212 350 80 0 chr12 54402440 54402540 -89383915 + L3 LINE CR1 708 815 -762 * 1154 257 72 37 chr12 54402538 54402939 -89383516 - L2 LINE L2 0 3313 2899 2283 117 3 0 chr12 54403090 54403399 -89383056 - AluSx SINE Alu -2 310 1 2191 125 0 16 chr12 54404184 54404495 -89381960 - AluSx SINE Alu -6 306 1 2086 104 4 7 chr12 54404551 54404870 -89381585 - AluSx SINE Alu 0 323 6 1710 124 4 4 chr12 54404982 54405216 -89381239 - AluSx SINE Alu -78 234 1 804 193 0 17 chr12 54405218 54405399 -89381056 - L1ME1 LINE L1 -262 5904 5727 731 116 0 128 chr12 54405399 54405563 -89380892 - FLAM_C SINE Alu 0 143 1 1802 162 7 10 chr12 54405614 54405910 -89380545 - AluSx SINE Alu -1 311 17 1730 116 9 0 chr12 54405910 54406143 -89380312 - AluSx SINE Alu -77 235 1 389 167 219 26 chr12 54406145 54406259 -89380196 - L1ME1 LINE L1 -565 5601 5466 1972 101 18 29 chr12 54406381 54406659 -89379796 + AluSp SINE Alu 26 300 -13 409 265 60 17 chr12 54406716 54406833 -89379622 - MIR SINE MIR 0 262 141 248 249 190 39 chr12 54406843 54407048 -89379407 - L2 LINE L2 -854 2460 2225 247 280 76 17 chr12 54407263 54407381 -89379074 - L2 LINE L2 -1199 2115 1991 1926 105 0 30 chr12 54407383 54407650 -89378805 + AluSq SINE Alu 1 259 -54 634 306 87 14 chr12 54408368 54408587 -89377868 - MIR SINE MIR -8 254 20 1354 94 0 0 chr12 54408615 54408796 -89377659 - AluY SINE Alu -12 299 119 1703 114 4 0 chr12 54408900 54409127 -89377328 + AluSp SINE Alu 71 298 -15 338 287 79 0 chr12 54409132 54409233 -89377222 + L2 LINE L2 3201 3309 -4 702 121 26 60 chr12 54409274 54409390 -89377065 + FLAM_C SINE Alu 1 112 -31 2075 123 30 13 chr12 54410627 54410929 -89375526 - AluSq SINE Alu -6 307 1 771 203 12 107 chr12 54411676 54411781 -89374674 + L1ME1 LINE L1 5941 6012 -154 2234 103 0 7 chr12 54411781 54412081 -89374374 - AluSg SINE Alu -12 298 1 771 203 12 107 chr12 54412081 54412217 -89374238 + L1ME1 LINE L1 6012 6159 -7 2378 90 0 7 chr12 54412223 54412524 -89373931 - AluSp SINE Alu -14 299 1 972 200 48 7 chr12 54412528 54412798 -89373657 + L1M4 LINE L1 5086 5366 -780 1999 138 3 10 chr12 54412798 54413096 -89373359 + AluSx SINE Alu 1 296 -16 2045 156 0 0 chr12 54413115 54413423 -89373032 + AluSx SINE Alu 1 308 -4 1612 114 5 14 chr12 54413425 54413645 -89372810 + AluSx SINE Alu 1 218 -94 616 181 60 0 chr12 54413748 54413864 -89372591 + FAM SINE Alu 1 49 0 445 266 42 70 chr12 54413968 54414043 -89372412 - MIR SINE MIR -27 235 159 2264 126 0 0 chr12 54414043 54414345 -89372110 + AluSx SINE Alu 1 302 -10 445 266 42 70 chr12 54414345 54414483 -89371972 - MIR SINE MIR -103 159 28 663 259 12 18 chr12 54414891 54415061 -89371394 + MIR3 SINE MIR 1 169 -39 2335 71 4 0 chr12 54415062 54415369 -89371086 - AluY SINE Alu 0 309 2 191 250 0 19 chr12 54415417 54415469 -89370986 - L2 LINE L2 -2 3270 3220 2221 115 0 29 chr12 54415993 54416305 -89370150 + AluSx SINE Alu 1 303 -9 180 219 0 0 chr12 54416506 54416547 -89369908 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 247 241 0 0 chr12 54416607 54416661 -89369794 - MER63 DNA MER1_type -320 740 687 36 62 0 0 chr12 54416663 54416727 -89369728 + AT_rich Low_complexity Low_complexity 1 64 0 284 314 35 0 chr12 54416759 54416845 -89369610 - L2 LINE L2 -36 3236 3148 309 280 21 11 chr12 54417844 54417937 -89368518 - MIR3 SINE MIR -11 197 104 261 257 0 0 chr12 54418092 54418166 -89368289 - L3 LINE CR1 -259 1318 1245 296 204 223 10 chr12 54418175 54418278 -89368177 + L2 LINE L2 3189 3313 0 1861 162 28 0 chr12 54418687 54418977 -89367478 - AluJb SINE Alu -13 299 2 192 310 130 0 chr12 54419051 54419151 -89367304 - L3 LINE CR1 -653 924 812 925 197 74 58 chr12 54419299 54419527 -89366928 - MER46C DNA MER2_type 0 338 102 2518 79 3 0 chr12 54419527 54419831 -89366624 + AluSp SINE Alu 1 305 -8 925 197 74 58 chr12 54419831 54419927 -89366528 - MER46C DNA MER2_type -236 102 9 415 219 122 15 chr12 54420714 54420855 -89365600 - MIR SINE MIR -62 146 36 229 146 0 0 chr12 54420955 54420996 -89365459 + L1ME LINE L1 5814 5854 -312 1764 137 11 4 chr12 54420996 54421273 -89365182 - AluSx SINE Alu -4 308 30 2295 117 0 0 chr12 54421287 54421585 -89364870 - AluSg SINE Alu -12 298 1 2398 105 0 10 chr12 54421587 54421900 -89364555 - AluSg SINE Alu 0 310 1 225 0 0 0 chr12 54421900 54421925 -89364530 + (T)n Simple_repeat Simple_repeat 1 25 0 1378 180 0 4 chr12 54422590 54422823 -89363632 + MIR SINE MIR 28 259 -3 2326 98 0 14 chr12 54422823 54423118 -89363337 + AluSq SINE Alu 1 291 -22 2153 123 10 3 chr12 54423196 54423506 -89362949 + AluSq SINE Alu 1 312 -1 198 241 58 69 chr12 54423620 54423707 -89362748 - L2 LINE L2 -1018 2296 2211 2074 124 3 3 chr12 54423740 54424047 -89362408 + AluSx SINE Alu 1 307 -5 698 115 146 0 chr12 54424261 54424391 -89362064 - L1MC1 LINE L1 -162 6171 6023 22 0 0 0 chr12 54424448 54424470 -89361985 + AT_rich Low_complexity Low_complexity 1 22 0 2349 53 0 27 chr12 54424477 54424776 -89361679 - L1PA5 LINE L1 0 6154 5864 294 323 132 2 chr12 54424777 54425054 -89361401 + L2 LINE L2 2736 3058 -255 510 243 7 49 chr12 54425202 54425346 -89361109 + L2 LINE L2 3171 3308 -5 2067 132 0 0 chr12 54425377 54425673 -89360782 - AluSg SINE Alu -14 296 1 2122 115 7 0 chr12 54425697 54425993 -89360462 - AluSc SINE Alu -11 298 1 191 306 83 0 chr12 54426385 54426457 -89359998 - L2 LINE L2 -1 3312 3235 1490 84 9 19 chr12 54426657 54426871 -89359584 + AluSp SINE Alu 84 295 -18 790 239 62 72 chr12 54426871 54427176 -89359279 + MLT1J LTR MaLR 202 503 -8 348 274 101 24 chr12 54427219 54427387 -89359068 + MIR3 SINE MIR 2 182 -26 2249 109 0 0 chr12 54427493 54427857 -89358598 - AluY SINE Alu 0 364 1 2121 132 0 0 chr12 54427883 54428193 -89358262 - AluSx SINE Alu 0 312 3 366 335 58 11 chr12 54428309 54428500 -89357955 + MIR SINE MIR 8 207 -55 1831 106 84 4 chr12 54428726 54429000 -89357455 + AluSg SINE Alu 1 296 -14 591 223 0 0 chr12 54429390 54429493 -89356962 - AluJb SINE Alu -86 226 124 2238 76 13 0 chr12 54429539 54429840 -89356615 + AluSg SINE Alu 1 305 -5 750 191 0 0 chr12 54429993 54430119 -89356336 + AluJb SINE Alu 28 153 -159 242 167 0 0 chr12 54430119 54430155 -89356300 - Alu SINE Alu -266 36 1 257 284 10 39 chr12 54432448 54432550 -89353905 + CT-rich Low_complexity Low_complexity 6 104 0 216 254 34 17 chr12 54432669 54432728 -89353727 + MER91 DNA MER1_type 137 196 0 335 276 82 15 chr12 54433106 54433240 -89353215 - MIR SINE MIR -50 212 70 809 152 8 8 chr12 54433260 54433385 -89353070 - AluJo SINE Alu -177 135 11 2114 103 0 10 chr12 54434161 54434462 -89351993 - AluSq SINE Alu -15 298 1 2061 131 0 0 chr12 54434462 54434752 -89351703 - AluSx SINE Alu -22 290 1 2159 122 0 0 chr12 54434789 54435084 -89351371 - AluSx SINE Alu -17 295 1 1838 75 111 29 chr12 54435127 54435406 -89351049 - AluY SINE Alu -9 302 1 529 255 97 20 chr12 54435538 54435734 -89350721 - L1MC4a LINE L1 -1849 5959 5749 232 263 18 0 chr12 54435766 54435823 -89350632 - L1MC4a LINE L1 -2165 5643 5586 2301 73 30 0 chr12 54436659 54436962 -89349493 - AluSp SINE Alu 0 313 2 1416 137 5 0 chr12 54437075 54437286 -89349169 - AluJo SINE Alu -100 212 1 2370 74 0 0 chr12 54437495 54437793 -89348662 - AluY SINE Alu -13 298 1 280 311 113 40 chr12 54437822 54437973 -89348482 - MER5A DNA MER1_type -13 165 4 180 0 0 0 chr12 54438084 54438104 -89348351 + (TA)n Simple_repeat Simple_repeat 2 21 0 2122 109 0 0 chr12 54438104 54438389 -89348066 - AluSq SINE Alu -28 285 1 706 159 0 0 chr12 54438396 54438503 -89347952 - AluJb SINE Alu -185 127 21 2172 98 17 0 chr12 54438516 54438812 -89347643 - AluSg SINE Alu -8 302 2 235 338 0 0 chr12 54438814 54438894 -89347561 + L1M4 LINE L1 4030 4109 -2037 836 170 0 0 chr12 54438932 54439085 -89347370 + L1M4 LINE L1 4091 4243 -1903 802 148 19 32 chr12 54439099 54439254 -89347201 + FRAM SINE Alu 16 168 -8 293 282 107 19 chr12 54440326 54440429 -89346026 + L2 LINE L2 2683 2794 -520 188 298 0 0 chr12 54440572 54440619 -89345836 - L2 LINE L2 -3 3269 3223 394 340 113 9 chr12 54440760 54440972 -89345483 - MIR SINE MIR -5 257 24 351 0 0 0 chr12 54441066 54441105 -89345350 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1794 115 79 4 chr12 54441926 54442205 -89344250 + AluSq SINE Alu 1 300 -13 181 326 126 0 chr12 54442308 54442403 -89344052 - L2 LINE L2 -335 2978 2872 2191 106 0 3 chr12 54442751 54443053 -89343402 + AluSq SINE Alu 1 301 -12 495 183 26 52 chr12 54444163 54444278 -89342177 - MER81 DNA DNA -2 112 1 1859 164 0 0 chr12 54444372 54444676 -89341779 - AluSx SINE Alu -8 304 1 328 308 0 16 chr12 54446375 54446557 -89339898 + (CCA)n Simple_repeat Simple_repeat 2 180 0 2173 110 0 0 chr12 54447289 54447581 -89338874 - AluSg SINE Alu -18 292 1 343 273 231 51 chr12 54448014 54448230 -89338225 + L3 LINE CR1 1276 1530 -47 2174 111 3 3 chr12 54448238 54448545 -89337910 - AluSp SINE Alu -1 312 6 559 201 9 12 chr12 54448547 54448560 -89337895 - L1MC/D LINE L1 -547 5615 5603 2114 97 0 35 chr12 54448560 54448871 -89337584 - AluSg SINE Alu -4 306 7 559 201 9 12 chr12 54448871 54448983 -89337472 - L1MC/D LINE L1 -559 5603 5505 1430 219 0 0 chr12 54448985 54449277 -89337178 - AluJo SINE Alu -10 302 11 38 0 0 0 chr12 54449286 54449324 -89337131 + AT_rich Low_complexity Low_complexity 1 38 0 2464 41 0 0 chr12 54449326 54449618 -89336837 - AluY SINE Alu -19 292 1 22 35 0 0 chr12 54449627 54449656 -89336799 + AT_rich Low_complexity Low_complexity 1 29 0 785 288 22 0 chr12 54450460 54450682 -89335773 + MIR SINE MIR 36 262 0 388 248 94 8 chr12 54450949 54451066 -89335389 + MIR SINE MIR 18 144 -64 593 121 0 0 chr12 54451222 54451313 -89335142 + AluS SINE Alu 221 311 0 2087 108 7 7 chr12 54451317 54451614 -89334841 + AluSp SINE Alu 3 299 -14 391 118 0 106 chr12 54451614 54451699 -89334756 - AluJ/FLAM SINE Alu -226 76 1 792 251 66 43 chr12 54451708 54452152 -89334303 - MLT1K LTR MaLR -13 575 142 2329 64 0 3 chr12 54452152 54452448 -89334007 + AluY SINE Alu 1 295 -16 792 251 66 43 chr12 54452448 54452486 -89333969 - MLT1K LTR MaLR -446 142 106 2045 125 0 22 chr12 54452486 54452805 -89333650 + AluSx SINE Alu 1 312 0 792 251 66 43 chr12 54452805 54452841 -89333614 - MLT1K LTR MaLR -482 106 2 225 269 178 36 chr12 54453227 54453446 -89333009 - L2 LINE L2 -584 2730 2481 180 214 71 83 chr12 54453607 54453691 -89332764 + L2 LINE L2 3173 3255 -17 307 367 98 8 chr12 54453908 54454164 -89332291 + L3 LINE CR1 1134 1412 -165 2034 116 9 38 chr12 54454168 54454488 -89331967 + AluSq SINE Alu 1 311 -2 2174 118 0 3 chr12 54454488 54454790 -89331665 + AluSx SINE Alu 1 303 -9 917 152 7 7 chr12 54454790 54455122 -89331333 + AluSg/x SINE Alu 134 465 0 1233 96 0 0 chr12 54455141 54455319 -89331136 + (GAA)n Simple_repeat Simple_repeat 3 180 0 238 296 52 17 chr12 54455917 54456032 -89330423 - MIR3 SINE MIR -17 191 73 343 301 64 0 chr12 54457196 54457331 -89329124 + MIR3 SINE MIR 58 201 -7 213 288 76 0 chr12 54458619 54458685 -89327770 + MIR SINE MIR 81 151 -57 731 249 50 33 chr12 54460490 54460731 -89325724 + MIR SINE MIR 2 246 -16 2130 101 3 3 chr12 54461424 54461722 -89324733 - AluSp SINE Alu -15 298 1 267 202 48 48 chr12 54461853 54461957 -89324498 - MER112 DNA MER1_type -139 121 18 299 326 89 11 chr12 54462843 54462968 -89323487 + MIR SINE MIR 9 140 -68 206 333 0 0 chr12 54463681 54463741 -89322714 + (CTGGGG)n Simple_repeat Simple_repeat 5 64 0 287 246 218 42 chr12 54463962 54464058 -89322397 + MIR SINE MIR 67 145 -117 1885 102 68 17 chr12 54464058 54464353 -89322102 + AluSg SINE Alu 1 310 0 287 246 218 42 chr12 54464353 54464398 -89322057 + MIR SINE MIR 145 233 -29 2146 103 6 10 chr12 54465187 54465499 -89320956 + AluY SINE Alu 1 311 0 2099 83 0 0 chr12 54465995 54466261 -89320194 + AluSg SINE Alu 1 266 -44 234 0 0 0 chr12 54466265 54466291 -89320164 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 652 190 32 32 chr12 54466357 54466515 -89319940 + MER5B DNA MER1_type 4 161 -17 322 293 25 55 chr12 54466542 54466715 -89319740 + MIR SINE MIR 20 190 -72 1877 106 0 11 chr12 54466927 54467200 -89319255 + AluSg SINE Alu 1 270 -40 280 173 19 0 chr12 54467300 54467352 -89319103 - L2 LINE L2 -36 3277 3225 1899 161 3 0 chr12 54467357 54467655 -89318800 + AluJo SINE Alu 2 300 -12 2082 85 4 7 chr12 54467662 54467963 -89318492 + AluSg SINE Alu 1 300 0 362 281 137 0 chr12 54468885 54469031 -89317424 + MIR SINE MIR 2 167 -95 447 260 16 31 chr12 54470250 54470377 -89316078 + MER94 DNA DNA 10 134 0 1837 82 27 41 chr12 54471025 54471317 -89315138 - AluY SINE Alu -23 288 1 249 226 12 24 chr12 54473859 54473943 -89312512 + (CCCCG)n Simple_repeat Simple_repeat 2 84 0 2312 69 20 3 chr12 54474088 54474392 -89312063 + AluSc SINE Alu 1 309 0 333 202 11 43 chr12 54474907 54475001 -89311454 - L2 LINE L2 -8 3305 3215 821 127 0 70 chr12 54475028 54475170 -89311285 + FLAM_C SINE Alu 2 133 0 1386 116 14 5 chr12 54475175 54475409 -89311046 + AluSq SINE Alu 76 311 0 365 288 51 25 chr12 54476288 54476406 -89310049 + MIR SINE MIR 43 163 -99 521 325 12 0 chr12 54478621 54478784 -89307671 - MIR SINE MIR -79 183 19 261 330 54 9 chr12 54479198 54479310 -89307145 + L3b LINE CR1 1336 1452 -131 1819 141 21 3 chr12 54480269 54480553 -89305902 - AluJb SINE Alu -23 289 1 337 353 37 0 chr12 54480571 54480707 -89305748 + MIR3 SINE MIR 52 192 -16 1018 234 57 4 chr12 54480736 54480984 -89305471 + MIR SINE MIR 2 262 0 650 205 3 34 chr12 54481874 54482033 -89304422 - MIR SINE MIR -37 171 12 210 242 30 15 chr12 54482105 54482171 -89304284 + MIR SINE MIR 69 135 -127 208 246 46 0 chr12 54483919 54483984 -89302471 - L3b LINE CR1 -192 1391 1324 323 229 24 12 chr12 54484182 54484265 -89302190 + MIR SINE MIR 61 144 -118 184 167 0 0 chr12 54485022 54485052 -89301403 + MIR SINE MIR 117 146 -62 276 247 47 47 chr12 54485214 54485299 -89301156 - MER91A DNA MER1_type 0 196 112 402 223 115 31 chr12 54485933 54486063 -89300392 - MIR SINE MIR -95 167 27 392 338 35 25 chr12 54486255 54486456 -89299999 + MIR SINE MIR 20 222 -40 867 125 11 2 chr12 54486770 54486946 -89299509 + AluJb SINE Alu 1 210 -102 293 309 55 15 chr12 54487232 54487433 -89299022 + L2 LINE L2 2880 3088 -184 193 256 0 0 chr12 54487510 54487553 -89298902 + L2 LINE L2 3228 3270 -2 1073 307 246 46 chr12 54488148 54489365 -89297090 + L3 LINE CR1 115 1574 -3 573 292 148 0 chr12 54489556 54489772 -89296683 + MIR SINE MIR 2 249 -13 185 311 123 33 chr12 54489950 54490072 -89296383 + L3b LINE CR1 1321 1453 -130 210 286 18 0 chr12 54490116 54490172 -89296283 + MIR SINE MIR 199 255 -7 * 211 271 34 0 chr12 54490123 54490182 -89296273 + L2 LINE L2 3210 3270 -2 344 248 116 0 chr12 54490301 54490430 -89296025 + MIR3 SINE MIR 50 193 -15 2222 98 3 0 chr12 54490500 54490795 -89295660 - AluSg SINE Alu -14 296 1 209 279 81 12 chr12 54490802 54490888 -89295567 + L2 LINE L2 3181 3272 -41 577 265 183 23 chr12 54491315 54491534 -89294921 + MER112 DNA MER1_type 1 254 -2 925 220 45 10 chr12 54492094 54492294 -89294161 - MER63A DNA MER1_type -3 207 1 393 302 112 11 chr12 54492483 54492672 -89293783 + MIR SINE MIR 40 246 -16 2037 129 3 0 chr12 54492675 54492977 -89293478 - AluSx SINE Alu -9 303 1 2088 69 52 10 chr12 54493642 54493930 -89292525 - AluSp SINE Alu -13 300 1 2204 88 7 0 chr12 54493930 54494224 -89292231 - AluSp SINE Alu -17 296 1 283 283 10 0 chr12 54494354 54494453 -89292002 - MER113 DNA MER1_type? -414 107 8 315 284 121 0 chr12 54494953 54495069 -89291386 + L2 LINE L2 3182 3311 -2 271 174 0 0 chr12 54495100 54495146 -89291309 + MIR SINE MIR 81 126 -82 608 233 102 0 chr12 54495191 54495367 -89291088 + MIR SINE MIR 3 196 -66 10380 65 8 3 chr12 54495498 54497618 -89288837 - L1PA6 LINE L1 -4 6150 4034 1807 163 7 0 chr12 54497621 54497928 -89288527 - AluJb SINE Alu -1 311 3 336 296 37 19 chr12 54497960 54498068 -89288387 + L3 LINE CR1 419 528 -1049 2232 87 0 0 chr12 54502746 54503033 -89283422 + AluSc SINE Alu 1 287 -22 679 123 16 0 chr12 54504209 54504331 -89282124 + (TCCA)n Simple_repeat Simple_repeat 4 127 0 261 342 79 0 chr12 54504343 54504457 -89281998 + L2 LINE L2 3147 3269 -3 244 312 73 92 chr12 54504432 54504746 -89281709 - L2 LINE L2 -9 3304 2997 * 250 364 41 8 chr12 54505019 54505140 -89281315 - L2 LINE L2 -5 3267 3143 291 313 82 63 chr12 54505231 54505499 -89280956 - L2 LINE L2 -172 3100 2828 2207 95 3 0 chr12 54506155 54506460 -89279995 - AluY SINE Alu -5 306 1 1681 164 3 47 chr12 54506791 54507109 -89279346 + AluJo SINE Alu 6 309 -3 428 346 98 20 chr12 54507183 54507478 -89278977 + L3 LINE CR1 963 1280 -297 1710 188 3 7 chr12 54509047 54509355 -89277100 - AluJb SINE Alu -5 307 1 280 264 44 33 chr12 54509645 54509736 -89276719 + L3 LINE CR1 1481 1572 -5 225 273 53 61 chr12 54509997 54510129 -89276326 - L2 LINE L2 0 3313 3183 371 272 0 0 chr12 54510603 54510695 -89275760 + L2 LINE L2 3173 3264 -8 1198 148 83 21 chr12 54511348 54511638 -89274817 + MER33 DNA MER1_type 1 308 -16 1524 105 0 39 chr12 54511652 54511823 -89274632 - AluSc SINE Alu -8 301 140 2160 100 10 0 chr12 54511823 54512113 -89274342 - AluSg SINE Alu -17 293 1 1524 105 0 39 chr12 54512113 54512170 -89274285 - AluSc SINE Alu -169 140 82 293 290 30 0 chr12 54512194 54512294 -89274161 + MER115 DNA AcHobo 336 438 -255 468 275 0 17 chr12 54512346 54512466 -89273989 - Charlie8 DNA MER1_type -2196 221 104 679 114 9 9 chr12 54512466 54512613 -89273842 - FRAM SINE Alu 0 188 42 226 77 51 0 chr12 54512614 54512653 -89273802 - Charlie8 DNA MER1_type -2316 101 61 1768 113 87 4 chr12 54512834 54513132 -89273323 + AluSx SINE Alu 6 312 0 1315 179 29 65 chr12 54513139 54513276 -89273179 + AluJo SINE Alu 5 145 -157 1934 129 0 4 chr12 54513276 54513555 -89272900 + AluSx SINE Alu 1 278 -34 252 0 0 0 chr12 54513557 54513585 -89272870 + (CA)n Simple_repeat Simple_repeat 2 29 0 1315 179 29 65 chr12 54513585 54513751 -89272704 + AluJo SINE Alu 146 300 -2 264 39 39 20 chr12 54513756 54513807 -89272648 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 405 272 109 0 chr12 54514322 54514469 -89271986 - MER91A DNA MER1_type -3 193 31 180 257 14 40 chr12 54514893 54514967 -89271488 - MIR3 SINE MIR -136 72 1 280 321 165 30 chr12 54515100 54515439 -89271016 + L2 LINE L2 2887 3271 -1 620 230 14 0 chr12 54515728 54515867 -89270588 - L1ME3A LINE L1 -8 6162 6022 1221 167 0 36 chr12 54515880 54516101 -89270354 - AluJb SINE Alu -16 296 84 282 29 0 0 chr12 54516951 54516986 -89269469 + (TG)n Simple_repeat Simple_repeat 2 36 0 949 189 16 5 chr12 54517323 54517513 -89268942 + AluJo SINE Alu 121 312 0 378 0 0 0 chr12 54518534 54518576 -89267879 + (TG)n Simple_repeat Simple_repeat 1 42 0 183 129 0 0 chr12 54518754 54518785 -89267670 + (TG)n Simple_repeat Simple_repeat 2 32 0 339 299 108 31 chr12 54519010 54519204 -89267251 + MIR SINE MIR 51 259 -3 33 25 0 0 chr12 54519917 54519957 -89266498 + GC_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr12 54520010 54520036 -89266419 + GC_rich Low_complexity Low_complexity 1 26 0 200 229 16 16 chr12 54520565 54520626 -89265829 + (CA)n Simple_repeat Simple_repeat 2 62 0 516 327 18 6 chr12 54520702 54520870 -89265585 + MIR SINE MIR 59 228 -34 240 221 15 44 chr12 54521702 54521770 -89264685 - MIR SINE MIR -113 95 30 347 245 147 10 chr12 54525075 54525177 -89261278 + MIR SINE MIR 40 155 -107 1829 140 0 47 chr12 54525233 54525555 -89260900 - AluJo SINE Alu -5 307 1 513 266 188 5 chr12 54526624 54526842 -89259613 + MIR SINE MIR 2 259 -3 522 349 50 42 chr12 54526916 54527294 -89259161 - L2 LINE L2 -2 3270 2890 2072 101 10 29 chr12 54527419 54527727 -89258728 + AluSx SINE Alu 1 302 -10 930 205 34 0 chr12 54527858 54528063 -89258392 - MER20 DNA MER1_type -5 214 3 450 0 0 0 chr12 54528942 54528992 -89257463 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3619 19 0 0 chr12 54529018 54529429 -89257026 + L1PA3 LINE L1 5745 6155 0 1915 138 24 0 chr12 54529871 54530168 -89256287 + AluSx SINE Alu 1 304 -8 626 296 84 47 chr12 54530622 54531027 -89255428 + L2 LINE L2 2096 2515 -799 381 318 63 37 chr12 54531056 54531245 -89255210 + L2 LINE L2 3119 3312 -1 493 302 60 11 chr12 54531688 54531870 -89254585 + MIR3 SINE MIR 3 193 -15 263 221 15 15 chr12 54532020 54532088 -89254367 + MER103 DNA DNA 24 91 -75 216 313 71 36 chr12 54532486 54532598 -89253857 - L2 LINE L2 -578 2736 2621 345 340 0 0 chr12 54533133 54533292 -89253163 + (CCG)n Simple_repeat Simple_repeat 2 160 0 1362 218 55 48 chr12 54535176 54535399 -89251056 + MLT1C LTR MaLR 6 226 -241 2045 136 0 19 chr12 54535399 54535708 -89250747 + AluSc SINE Alu 1 303 -6 1362 218 55 48 chr12 54535708 54535943 -89250512 + MLT1C LTR MaLR 226 467 0 2266 82 0 13 chr12 54536182 54536485 -89249970 + AluY SINE Alu 3 301 -10 222 228 59 0 chr12 54536619 54536687 -89249768 - MIR SINE MIR -90 172 100 352 321 31 25 chr12 54536881 54537040 -89249415 - MER5A DNA MER1_type -4 185 26 2071 127 19 3 chr12 54537614 54537921 -89248534 + AluSq SINE Alu 1 312 -1 765 125 0 0 chr12 54537938 54538058 -89248397 + (GGAA)n Simple_repeat Simple_repeat 4 123 0 2224 129 3 0 chr12 54538063 54538729 -89247726 + AluSx SINE Alu 1 311 -1 292 277 69 20 chr12 54539821 54539922 -89246533 + MIR3 SINE MIR 86 191 -17 1018 261 70 73 chr12 54539929 54539982 -89246473 + L2 LINE L2 2789 2841 -472 2038 123 33 0 chr12 54539982 54540284 -89246171 - AluSx SINE Alu 0 312 1 1018 261 70 73 chr12 54540284 54540652 -89245803 + L2 LINE L2 2841 3205 -108 2220 102 0 0 chr12 54540652 54540945 -89245510 + AluSg1 SINE Alu 1 293 -16 1018 261 70 73 chr12 54540945 54541054 -89245401 + L2 LINE L2 3205 3313 0 291 271 42 31 chr12 54542100 54542196 -89244259 - MIR SINE MIR -92 116 20 293 276 63 61 chr12 54542220 54542400 -89244055 - MIR3 SINE MIR -58 150 10 259 283 44 63 chr12 54544138 54544297 -89242158 - L2 LINE L2 -86 3186 3031 2176 109 0 7 chr12 54544741 54545035 -89241420 + AluSx SINE Alu 1 292 -20 2058 103 7 0 chr12 54545062 54545367 -89241088 + AluY SINE Alu 1 307 0 186 343 110 0 chr12 54547223 54547296 -89239159 + L2 LINE L2 3220 3300 -13 231 114 0 0 chr12 54547297 54547332 -89239123 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 348 83 0 0 chr12 54547335 54547383 -89239072 + (CA)n Simple_repeat Simple_repeat 1 48 0 2210 74 39 0 chr12 54547433 54547716 -89238739 + AluSg SINE Alu 1 294 -16 204 40 0 0 chr12 54548610 54548635 -89237820 + (CA)n Simple_repeat Simple_repeat 1 25 0 818 50 0 0 chr12 54549847 54549946 -89236509 - AluY SINE Alu -12 299 201 2265 184 31 27 chr12 54549985 54550346 -89236109 + L1MB8 LINE L1 5698 6064 -114 1623 161 7 31 chr12 54550346 54550661 -89235794 + AluJb SINE Alu 1 308 0 2265 184 31 27 chr12 54550661 54550777 -89235678 + L1MB8 LINE L1 6064 6178 0 393 299 64 37 chr12 54551183 54551370 -89235085 + L3 LINE CR1 1382 1573 -4 854 153 15 0 chr12 54551561 54551692 -89234763 - FLAM_C SINE Alu 0 133 1 192 293 0 80 chr12 54551820 54551895 -89234560 + MER5B DNA MER1_type 9 77 -101 180 0 0 0 chr12 54552137 54552157 -89234298 + (CAGAGA)n Simple_repeat Simple_repeat 6 25 0 2368 84 0 0 chr12 54552690 54552987 -89233468 + AluSx SINE Alu 1 297 -15 187 328 183 8 chr12 54553004 54553135 -89233320 - L2 LINE L2 -1 3271 3118 493 199 114 15 chr12 54553171 54553302 -89233153 - MIR SINE MIR -50 212 69 2002 123 30 17 chr12 54553371 54553671 -89232784 + AluSx SINE Alu 1 304 -8 347 157 0 14 chr12 54555489 54555559 -89230896 - FLAM_A SINE Alu 0 133 65 1866 120 39 7 chr12 54555559 54555843 -89230612 + AluSq SINE Alu 1 293 -20 421 218 35 106 chr12 54556685 54557025 -89229430 + L1MC5 LINE L1 7505 7820 -141 426 246 72 7 chr12 54557036 54557174 -89229281 + L1MC5 LINE L1 7783 7929 -32 1593 167 11 3 chr12 54557956 54558238 -89228217 + AluJo SINE Alu 27 310 -2 366 186 10 11 chr12 54558238 54558337 -89228118 + L1MC4 LINE L1 7902 8042 0 523 272 15 10 chr12 54558694 54558862 -89227593 + MIR SINE MIR 12 145 -63 201 218 55 0 chr12 54559296 54559351 -89227104 + MIR SINE MIR 87 144 -64 270 256 45 90 chr12 54561771 54561904 -89224551 + MIR SINE MIR 12 138 -124 228 347 66 30 chr12 54562214 54562381 -89224074 - L2 LINE L2 -14 3258 3086 221 393 24 0 chr12 54562761 54562845 -89223610 - MIR SINE MIR -1 261 176 538 252 258 16 chr12 54562845 54563113 -89223342 + LTR33 LTR ERVL 5 207 -314 351 242 172 20 chr12 54563113 54563212 -89223243 - MER81 DNA DNA 0 114 1 538 252 258 16 chr12 54563212 54563312 -89223143 + LTR33 LTR ERVL 207 462 -59 581 212 59 0 chr12 54563829 54563947 -89222508 - MIR SINE MIR -87 175 51 2205 103 0 0 chr12 54615314 54615614 -89170841 - AluSg SINE Alu -8 302 3 410 285 153 55 chr12 54615947 54616273 -89170182 - HAL1b LINE L1 -497 851 494 2041 139 3 0 chr12 54616275 54616584 -89169871 + AluSx SINE Alu 1 310 -2 2178 93 3 10 chr12 54616591 54616892 -89169563 + AluSp SINE Alu 1 299 -14 899 194 51 74 chr12 54616894 54617244 -89169211 - L1M4 LINE L1 -1534 4612 4271 1209 92 29 12 chr12 54617806 54617979 -89168476 + L1PA11 LINE L1 5999 6174 0 363 245 109 35 chr12 54618017 54618153 -89168302 + MIR SINE MIR 47 198 -64 2254 97 0 0 chr12 54618153 54618453 -89168002 + AluSg SINE Alu 1 300 -10 363 245 109 35 chr12 54618453 54618472 -89167983 + MIR SINE MIR 198 214 -48 1407 176 0 66 chr12 54618897 54619198 -89167257 - AluJb SINE Alu -31 281 1 468 336 65 32 chr12 54619200 54619417 -89167038 - L1MC/D LINE L1 -2205 5603 5380 546 127 0 110 chr12 54619421 54619448 -89167007 - FLAM_A SINE Alu -182 129 101 2047 98 3 7 chr12 54619448 54619767 -89166688 + AluSp SINE Alu 1 318 0 546 127 0 110 chr12 54619767 54619856 -89166599 - FLAM_A SINE Alu -210 101 25 274 201 32 10 chr12 54619856 54619987 -89166468 - L1MC/D LINE L1 -792 5388 5255 25 31 0 0 chr12 54620267 54620299 -89166156 + AT_rich Low_complexity Low_complexity 1 32 0 1697 182 7 0 chr12 54620357 54620653 -89165802 + AluJo SINE Alu 1 298 -14 1931 120 0 13 chr12 54620655 54620954 -89165501 - AluY SINE Alu -16 295 1 2194 76 3 33 chr12 54620969 54621272 -89165183 - AluSq SINE Alu -19 294 1 263 323 68 52 chr12 54621393 54621585 -89164870 + MIR SINE MIR 13 207 -55 27 49 0 0 chr12 54623079 54623120 -89163335 + GC_rich Low_complexity Low_complexity 1 41 0 229 284 0 14 chr12 54624161 54624235 -89162220 - L1ME4a LINE L1 -95 6026 5954 229 250 0 50 chr12 54624244 54624304 -89162151 - L2 LINE L2 -9 3304 3248 281 244 154 16 chr12 54624322 54624445 -89162010 - L1ME4a LINE L1 -1997 5811 5672 2000 91 35 3 chr12 54624447 54624734 -89161721 + AluSp SINE Alu 3 298 -15 969 118 7 13 chr12 54624904 54625056 -89161399 - AluSp SINE Alu -162 151 1 1887 75 19 8 chr12 54625056 54625322 -89161133 + PABL_A-int LTR ERV1 631 899 -4116 * 4267 69 77 65 chr12 54625314 54625916 -89160539 + PABL_A-int LTR ERV1 1151 1779 -3586 2565 51 0 7 chr12 54625916 54626210 -89160245 + AluY SINE Alu 1 292 -19 4267 69 77 65 chr12 54626210 54626460 -89159995 + PABL_A-int LTR ERV1 1779 2025 -3340 995 189 0 0 chr12 54626627 54626802 -89159653 - AluSx SINE Alu -137 175 1 7170 71 14 4 chr12 54626802 54627834 -89158621 - PABL_A-int LTR ERV1 -1758 3257 2215 2257 115 3 10 chr12 54627973 54628287 -89158168 - AluSp SINE Alu -1 312 1 30 27 0 0 chr12 54628292 54628329 -89158126 + AT_rich Low_complexity Low_complexity 1 37 0 249 290 76 23 chr12 54628332 54628463 -89157992 - L1MEc LINE L1 -4547 1849 1712 1936 152 7 3 chr12 54628480 54628782 -89157673 - AluSc SINE Alu -6 303 1 259 200 11 67 chr12 54628783 54628873 -89157582 - MLT1F1 LTR MaLR -474 93 9 246 158 0 18 chr12 54628873 54628930 -89157525 - L1MC3 LINE L1 -719 7066 7011 930 156 44 11 chr12 54628930 54629110 -89157345 + MLT1C LTR MaLR 1 186 -281 2367 75 6 28 chr12 54629110 54629429 -89157026 + AluSq SINE Alu 1 312 -1 619 56 45 0 chr12 54629474 54629563 -89156892 + AluSg/x SINE Alu 202 294 -15 1046 234 30 24 chr12 54629568 54629863 -89156592 + MLT1C LTR MaLR 171 467 0 3403 209 30 33 chr12 54629863 54630731 -89155724 - L1MC3 LINE L1 -770 7015 6151 1718 167 0 72 chr12 54631731 54631871 -89154584 + AluJb SINE Alu 1 107 -205 2198 105 3 23 chr12 54631871 54632175 -89154280 - AluSq SINE Alu -15 298 1 1718 167 0 72 chr12 54632175 54632352 -89154103 + AluJb SINE Alu 107 295 -17 506 165 21 0 chr12 54632616 54632713 -89153742 + L1PA8 LINE L1 5964 6062 -110 2055 153 0 0 chr12 54632718 54633013 -89153442 + AluSg SINE Alu 1 295 -15 938 73 15 0 chr12 54633016 54633153 -89153302 + L1P4 LINE L1 5595 5733 -435 237 167 0 19 chr12 54633253 54633307 -89153148 + Alu SINE Alu 245 297 -5 2991 84 94 50 chr12 54633307 54633850 -89152605 + L1PA7 LINE L1 5598 6154 0 204 67 22 44 chr12 54635725 54635770 -89150685 + (CTG)n Simple_repeat Simple_repeat 3 46 0 377 150 60 0 chr12 54637718 54637851 -89148604 + (TTAA)n Simple_repeat Simple_repeat 3 143 0 2111 116 10 3 chr12 54637861 54638153 -89148302 - AluSx SINE Alu -18 294 1 1946 157 0 7 chr12 54638158 54638451 -89148004 - AluJb SINE Alu -17 295 5 752 199 74 0 chr12 54639369 54639545 -89146910 - MER5A DNA MER1_type 0 189 1 2332 108 0 3 chr12 54639611 54639918 -89146537 + AluSg SINE Alu 1 306 -4 420 315 80 5 chr12 54640693 54640893 -89145562 - MIR SINE MIR 0 262 48 1987 106 81 18 chr12 54642283 54642567 -89143888 - AluSx SINE Alu -10 302 1 240 218 18 0 chr12 54642999 54643054 -89143401 + L2 LINE L2 3217 3272 0 203 150 25 88 chr12 54643390 54643470 -89142985 + (CCCTG)n Simple_repeat Simple_repeat 2 76 0 265 372 93 0 chr12 54644323 54644452 -89142003 - L2 LINE L2 -5 3267 3127 3033 70 23 5 chr12 54644557 54645122 -89141333 - PABL_A LTR ERV1 0 660 1 10718 68 21 5 chr12 54645123 54645616 -89140839 - PABL_A-int LTR ERV1 -1 5014 4531 2319 110 0 0 chr12 54645616 54645916 -89140539 - AluSx SINE Alu -12 300 1 10718 68 21 5 chr12 54645916 54646912 -89139543 - PABL_A-int LTR ERV1 -484 4531 3500 2095 99 11 0 chr12 54647021 54647293 -89139162 + AluSg SINE Alu 20 294 -16 263 248 43 111 chr12 54647435 54647552 -89138903 + MER102a DNA MER1_type 221 329 -1 1158 135 0 0 chr12 54647675 54647877 -89138578 - AluSg/x SINE Alu 0 328 127 2272 110 3 7 chr12 54647889 54648198 -89138257 - AluSp SINE Alu 0 313 6 370 228 13 0 chr12 54648370 54648449 -89138006 - MIR SINE MIR -98 164 85 197 292 108 0 chr12 54648636 54648701 -89137754 + MIR SINE MIR 41 112 -96 2418 97 0 3 chr12 54648942 54649250 -89137205 - AluSg SINE Alu -1 309 3 1716 187 7 0 chr12 54649254 54649548 -89136907 - AluJb SINE Alu -16 296 1 503 233 69 9 chr12 54649572 54649688 -89136767 - FLAM_A SINE Alu -10 123 1 2201 108 10 0 chr12 54649700 54649995 -89136460 - AluSq SINE Alu -15 298 1 1241 279 88 20 chr12 54650287 54650766 -89135689 - MLT1H LTR MaLR 0 549 1 2481 103 0 0 chr12 54651086 54651397 -89135058 - AluSq SINE Alu -2 311 1 2372 109 0 0 chr12 54651518 54651822 -89134633 + AluSx SINE Alu 1 304 -8 1347 115 0 0 chr12 54651822 54651996 -89134459 + AluSg/x SINE Alu 134 307 -5 286 152 0 30 chr12 54651996 54652062 -89134393 + GA-rich Low_complexity Low_complexity 1 64 0 2076 94 16 49 chr12 54652071 54652379 -89134076 + AluSx SINE Alu 1 298 -14 333 121 69 0 chr12 54652381 54652439 -89134016 + MLT1A2 LTR MaLR 313 374 0 2473 82 0 19 chr12 54653033 54653348 -89133107 + AluSc SINE Alu 1 309 0 1981 154 3 7 chr12 54653356 54653655 -89132800 + AluJo SINE Alu 1 298 -14 2282 128 0 3 chr12 54653657 54653947 -89132508 + AluSx SINE Alu 2 292 -20 189 0 0 0 chr12 54653947 54653968 -89132487 + (CA)n Simple_repeat Simple_repeat 2 22 0 2282 128 0 3 chr12 54653968 54653989 -89132466 + AluSx SINE Alu 292 312 0 493 282 93 35 chr12 54654513 54654825 -89131630 + L2 LINE L2 2842 3171 -142 2272 103 10 0 chr12 54654827 54655127 -89131328 - AluSx SINE Alu -9 303 1 2217 125 0 0 chr12 54655184 54655480 -89130975 - AluSg SINE Alu -14 296 1 2097 117 0 42 chr12 54655482 54655790 -89130665 - AluSx SINE Alu -17 295 1 1757 171 17 17 chr12 54655792 54656090 -89130365 - AluJo SINE Alu -14 298 1 286 316 215 23 chr12 54656139 54656316 -89130139 + MIR SINE MIR 18 228 -34 223 178 0 22 chr12 54657961 54658006 -89128449 + GA-rich Low_complexity Low_complexity 5 48 0 259 358 0 0 chr12 54658385 54658494 -89127961 + C-rich Low_complexity Low_complexity 1 109 0 4329 79 5 47 chr12 54658638 54658812 -89127643 - PABL_A-int LTR ERV1 -4399 616 436 2379 99 20 0 chr12 54658812 54659115 -89127340 - AluSg1 SINE Alu 0 309 1 4329 79 5 47 chr12 54659115 54659583 -89126872 - PABL_A-int LTR ERV1 -4579 436 1 4546 64 78 0 chr12 54659583 54660195 -89126260 - PABL_A LTR ERV1 0 660 1 22 56 0 0 chr12 54660345 54660381 -89126074 + AT_rich Low_complexity Low_complexity 1 36 0 2250 113 0 0 chr12 54660481 54660772 -89125683 + AluSx SINE Alu 1 291 -21 329 262 12 0 chr12 54660957 54661041 -89125414 - L1MC/D LINE L1 -2019 5789 5705 303 315 61 30 chr12 54661205 54661370 -89125085 - L3 LINE CR1 -21 1556 1387 253 192 0 19 chr12 54662057 54662109 -89124346 - MIR SINE MIR -132 130 80 1025 117 0 0 chr12 54662458 54662603 -89123852 - Tigger1 DNA MER2_type -1189 1229 1085 1623 209 0 14 chr12 54662624 54662921 -89123534 + AluJb SINE Alu 1 293 -19 1295 171 0 101 chr12 54662921 54663002 -89123453 - Tigger1 DNA MER2_type -1947 471 383 2359 93 3 7 chr12 54663002 54663302 -89123153 - AluSx SINE Alu -13 299 1 1295 171 0 101 chr12 54663302 54663313 -89123142 - Tigger1 DNA MER2_type -2035 383 372 947 105 0 0 chr12 54663313 54663446 -89123009 - FLAM_C SINE Alu 0 133 1 1295 171 0 101 chr12 54663446 54663639 -89122816 - Tigger1 DNA MER2_type -2046 372 214 952 173 22 6 chr12 54663870 54664049 -89122406 - Tigger1 DNA MER2_type -2207 211 30 222 269 10 48 chr12 54664271 54664375 -89122080 + C-rich Low_complexity Low_complexity 3 102 0 350 276 37 30 chr12 54665721 54665855 -89120600 + L2 LINE L2 2917 3051 -221 261 229 14 0 chr12 54666081 54666113 -89120342 + (TGAA)n Simple_repeat Simple_repeat 4 34 -40 1848 142 71 7 chr12 54666113 54666247 -89120208 + AluJo SINE Alu 1 125 -187 2494 70 13 0 chr12 54666247 54666549 -89119906 + AluY SINE Alu 1 306 -5 1848 142 71 7 chr12 54666549 54666695 -89119760 + AluJo SINE Alu 125 299 -13 261 229 14 0 chr12 54666695 54666732 -89119723 + (TGAA)n Simple_repeat Simple_repeat 34 74 0 247 278 67 0 chr12 54667763 54667853 -89118602 - MIR SINE MIR -72 190 95 2291 129 0 3 chr12 54667854 54668165 -89118290 - AluSg SINE Alu 0 310 1 180 0 0 0 chr12 54668266 54668286 -89118169 + (T)n Simple_repeat Simple_repeat 1 20 0 6351 18 6 1 chr12 54668399 54669073 -89117382 - SVA Other Other -4 1382 706 312 27 0 0 chr12 54670588 54670625 -89115830 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2485 56 0 30 chr12 54671230 54671534 -89114921 - AluY SINE Alu -15 296 2 2309 82 0 0 chr12 54671580 54671897 -89114558 - AluSg SINE Alu 0 319 3 470 292 113 41 chr12 54672373 54672558 -89113897 - HAL1b LINE L1 -646 1533 1363 2246 139 0 0 chr12 54672558 54672868 -89113587 + AluSx SINE Alu 1 310 -2 2446 107 0 0 chr12 54672875 54673185 -89113270 + AluSg SINE Alu 1 310 0 470 292 113 41 chr12 54673185 54673634 -89112821 - HAL1b LINE L1 -821 1358 221 302 267 67 44 chr12 54673653 54673788 -89112667 - L1 LINE L1 -2932 3214 3077 644 210 147 6 chr12 54674142 54674299 -89112156 - MER5A DNA MER1_type -2 187 9 213 216 0 0 chr12 54674317 54674354 -89112101 + polypyrimidine Low_complexity Low_complexity 1 37 0 1879 168 26 3 chr12 54674372 54674676 -89111779 - AluSx SINE Alu -1 311 1 2291 131 0 0 chr12 54675515 54675827 -89110628 - AluSx SINE Alu 0 312 1 331 257 209 40 chr12 54675922 54676218 -89110237 + L2 LINE L2 1487 1832 -1482 936 167 68 65 chr12 54676400 54676481 -89109974 - L1MB8 LINE L1 -3 6175 6096 2455 71 0 19 chr12 54676481 54676792 -89109663 + AluY SINE Alu 1 305 -6 936 167 68 65 chr12 54676792 54676942 -89109513 - L1MB8 LINE L1 -82 6096 5940 1852 152 6 58 chr12 54676942 54677271 -89109184 - AluJo SINE Alu 0 312 1 936 167 68 65 chr12 54677271 54677301 -89109154 - L1MB8 LINE L1 -238 5940 5912 2472 93 0 0 chr12 54678301 54678612 -89107843 - AluY SINE Alu 0 311 1 1325 149 5 10 chr12 54678634 54678842 -89107613 + AluJo SINE Alu 87 293 -19 2438 83 7 3 chr12 54678872 54679172 -89107283 + AluSx SINE Alu 1 301 -11 2330 106 3 0 chr12 54679172 54679473 -89106982 + AluSp SINE Alu 1 302 -11 1720 154 14 17 chr12 54679475 54679768 -89106687 + AluJb SINE Alu 2 293 -19 350 200 74 0 chr12 54679775 54679870 -89106585 - L1MB8 LINE L1 -254 5924 5823 1440 209 7 24 chr12 54679870 54680162 -89106293 - AluJb SINE Alu -12 300 14 4094 169 110 57 chr12 54680212 54681179 -89105276 - L1MB8 LINE L1 -347 5831 4917 1863 152 7 14 chr12 54681179 54681500 -89104955 - AluJb SINE Alu 0 319 1 4094 169 110 57 chr12 54681500 54681883 -89104572 - L1MB8 LINE L1 -1261 4917 4556 2160 108 0 0 chr12 54681883 54682186 -89104269 + AluSc SINE Alu 1 303 0 4094 169 110 57 chr12 54682186 54682338 -89104117 - L1MB8 LINE L1 -1622 4556 4414 180 0 0 0 chr12 54682338 54682358 -89104097 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 746 188 0 0 chr12 54682364 54682481 -89103974 - FLAM_C SINE Alu -15 118 2 4094 169 110 57 chr12 54682481 54682701 -89103754 - L1MB8 LINE L1 -1768 4410 3958 1665 110 0 42 chr12 54682704 54682941 -89103514 - AluSg/x SINE Alu 0 312 86 272 293 0 13 chr12 54683604 54683679 -89102776 - L3 LINE CR1 -117 1460 1387 268 192 0 19 chr12 54684366 54684418 -89102037 - MIR SINE MIR -132 130 80 1021 117 0 0 chr12 54684767 54684912 -89101543 - Tigger1 DNA MER2_type -1189 1229 1085 1616 209 0 14 chr12 54684933 54685230 -89101225 + AluJb SINE Alu 1 293 -19 1274 178 0 101 chr12 54685230 54685311 -89101144 - Tigger1 DNA MER2_type -1947 471 383 2393 93 0 7 chr12 54685311 54685612 -89100843 - AluSx SINE Alu -13 299 1 1274 178 0 101 chr12 54685612 54685623 -89100832 - Tigger1 DNA MER2_type -2035 383 372 1006 105 0 0 chr12 54685623 54685756 -89100699 - FLAM_C SINE Alu 0 133 1 1274 178 0 101 chr12 54685756 54685949 -89100506 - Tigger1 DNA MER2_type -2046 372 214 943 173 22 6 chr12 54686180 54686359 -89100096 - Tigger1 DNA MER2_type -2207 211 30 206 279 10 48 chr12 54686581 54686685 -89099770 + C-rich Low_complexity Low_complexity 3 102 0 385 276 37 30 chr12 54688013 54688147 -89098308 + L2 LINE L2 2917 3051 -221 261 229 14 0 chr12 54688373 54688405 -89098050 + (TGAA)n Simple_repeat Simple_repeat 4 34 -40 1816 146 71 7 chr12 54688405 54688539 -89097916 + AluJo SINE Alu 1 125 -187 2463 73 13 0 chr12 54688539 54688841 -89097614 + AluY SINE Alu 1 306 -5 1816 146 71 7 chr12 54688841 54688987 -89097468 + AluJo SINE Alu 125 299 -13 261 229 14 0 chr12 54688987 54689024 -89097431 + (TGAA)n Simple_repeat Simple_repeat 34 74 0 267 278 67 0 chr12 54690055 54690145 -89096310 - MIR SINE MIR -72 190 95 2269 132 0 3 chr12 54690146 54690457 -89095998 - AluSg SINE Alu 0 310 1 180 0 0 0 chr12 54690558 54690578 -89095877 + (T)n Simple_repeat Simple_repeat 1 20 0 6323 18 6 1 chr12 54690691 54691365 -89095090 - SVA Other Other -4 1382 706 312 27 0 0 chr12 54692879 54692916 -89093539 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2421 66 0 30 chr12 54693522 54693826 -89092629 - AluY SINE Alu -14 297 3 403 281 68 14 chr12 54693855 54694001 -89092454 - L1ME4a LINE L1 -3 6118 5965 2637 42 0 13 chr12 54694005 54694317 -89092138 - AluY SINE Alu -3 308 1 1082 142 47 9 chr12 54694317 54694528 -89091927 + L1MB7 LINE L1 5908 6126 -58 245 98 24 0 chr12 54695033 54695074 -89091381 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 2370 101 7 0 chr12 54695108 54695414 -89091041 - AluSx SINE Alu -4 308 1 610 177 62 67 chr12 54697249 54697319 -89089136 + MER5A DNA MER1_type 6 75 -114 2099 128 3 7 chr12 54697319 54697625 -89088830 + AluSx SINE Alu 1 305 -7 610 177 62 67 chr12 54697625 54697738 -89088717 + MER5A DNA MER1_type 75 189 0 235 283 33 11 chr12 54698626 54698718 -89087737 + L1ME LINE L1 5497 5590 -531 452 110 0 61 chr12 54698722 54698804 -89087651 - Alu SINE Alu -4 307 231 37 29 0 43 chr12 54698804 54698844 -89087611 + AT_rich Low_complexity Low_complexity 1 41 -26 2364 101 3 0 chr12 54698844 54699142 -89087313 - AluSp SINE Alu -14 299 1 2327 117 0 0 chr12 54699143 54699442 -89087013 - AluSx SINE Alu -13 299 1 37 29 0 43 chr12 54699442 54699469 -89086986 + AT_rich Low_complexity Low_complexity 40 67 0 701 203 14 0 chr12 54699501 54699639 -89086816 + MIR SINE MIR 110 249 -13 185 91 0 30 chr12 54699651 54699684 -89086771 + (TTA)n Simple_repeat Simple_repeat 1 32 0 4530 143 24 26 chr12 54699922 54700783 -89085672 - L1MB8 LINE L1 0 6178 5319 250 329 99 28 chr12 54700788 54701001 -89085454 - L2 LINE L2 -103 3210 2983 4138 212 94 44 chr12 54701410 54701503 -89084952 - L1MB2 LINE L1 -26 6145 6058 1888 162 10 3 chr12 54701503 54701823 -89084632 - AluSx SINE Alu 0 312 2 4138 212 94 44 chr12 54701823 54701980 -89084475 - L1MB2 LINE L1 -113 6058 5910 2248 110 3 7 chr12 54701980 54702288 -89084167 - AluSg SINE Alu -1 309 3 4138 212 94 44 chr12 54702288 54702649 -89083806 - L1MB2 LINE L1 -261 5910 5569 2532 70 0 10 chr12 54702649 54702962 -89083493 - AluY SINE Alu -1 310 1 1749 155 0 68 chr12 54702970 54703292 -89083163 - AluJo SINE Alu 0 312 13 4138 212 94 44 chr12 54703292 54703598 -89082857 - L1MB2 LINE L1 -608 5563 5274 2765 116 32 16 chr12 54703598 54704036 -89082419 - L1PA16 LINE L1 -5 6161 5717 4138 212 94 44 chr12 54704036 54704943 -89081512 - L1MB2 LINE L1 -897 5274 3510 808 103 0 0 chr12 54704965 54705072 -89081383 - AluJb SINE Alu -30 282 176 1699 178 3 29 chr12 54705083 54705252 -89081203 - AluJo SINE Alu -11 301 142 2431 92 3 0 chr12 54705252 54705557 -89080898 - AluSp SINE Alu -7 306 1 1699 178 3 29 chr12 54705557 54705696 -89080759 - AluJo SINE Alu -170 142 1 540 231 9 0 chr12 54705753 54705861 -89080594 - AluSg/x SINE Alu -14 298 190 1988 120 18 3 chr12 54706284 54706568 -89079887 - AluSg SINE Alu -22 288 1 1966 134 13 7 chr12 54706667 54706965 -89079490 - AluSx SINE Alu -12 300 1 482 232 222 24 chr12 54707047 54707254 -89079201 + MIR SINE MIR 12 259 -3 2274 128 0 0 chr12 54707794 54708100 -89078355 + AluSq SINE Alu 1 306 -7 473 97 0 0 chr12 54708122 54708194 -89078261 - Alu SINE Alu 0 312 241 1040 138 7 0 chr12 54708198 54708343 -89078112 - AluSq/x SINE Alu -166 146 1 839 180 0 0 chr12 54709981 54710109 -89076346 - FLAM_A SINE Alu -5 128 1 700 190 162 0 chr12 54710654 54710833 -89075622 + MER20 DNA MER1_type 6 213 -6 1154 191 183 0 chr12 54711568 54711814 -89074641 + AluJo SINE Alu 3 293 -9 2439 63 0 3 chr12 54711923 54712208 -89074247 - AluSc SINE Alu -25 284 1 2494 82 3 0 chr12 54712256 54712560 -89073895 - AluSp SINE Alu -8 305 1 278 269 10 67 chr12 54712672 54712776 -89073679 - L2 LINE L2 -55 3258 3161 321 336 45 0 chr12 54713191 54713301 -89073154 + L1MC4 LINE L1 7928 8042 0 228 35 0 0 chr12 54713326 54713355 -89073100 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1858 124 11 7 chr12 54713359 54713632 -89072823 - AluSx SINE Alu -37 275 2 2107 95 40 17 chr12 54714503 54714799 -89071656 + AluY SINE Alu 1 303 -8 286 279 158 55 chr12 54714853 54715018 -89071437 + Charlie8 DNA MER1_type 84 265 -2152 375 245 43 29 chr12 54715110 54715249 -89071206 - L1ME LINE L1 -404 5717 5577 1466 184 0 4 chr12 54715272 54715546 -89070909 - AluSx SINE Alu 0 307 35 656 111 9 0 chr12 54716321 54716429 -89070026 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 1202 120 60 6 chr12 54716429 54716612 -89069843 + AluY SINE Alu 99 291 -20 29 0 0 0 chr12 54716612 54716641 -89069814 + AT_rich Low_complexity Low_complexity 1 29 0 2101 83 58 4 chr12 54716651 54716927 -89069528 + AluSx SINE Alu 1 291 -21 344 22 0 22 chr12 54717111 54717157 -89069298 + (TC)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 54717156 54717189 -89069266 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 213 94 0 0 chr12 54717200 54717232 -89069223 + (TC)n Simple_repeat Simple_repeat 1 32 0 191 265 71 20 chr12 54718744 54718842 -89067613 + L2 LINE L2 2950 3052 -220 243 0 0 0 chr12 54719617 54719644 -89066811 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1700 283 57 77 chr12 54720038 54720162 -89066293 + L2 LINE L2 1608 1733 -1581 2457 103 0 0 chr12 54720162 54720473 -89065982 - AluSx SINE Alu -1 311 1 1700 283 57 77 chr12 54720473 54720524 -89065931 + L2 LINE L2 1733 1784 -1530 2191 109 3 0 chr12 54720524 54720853 -89065602 - AluSq SINE Alu 0 330 1 1700 283 57 77 chr12 54720853 54721066 -89065389 + L2 LINE L2 1784 2000 -1314 2505 91 0 3 chr12 54721066 54721375 -89065080 - AluSq SINE Alu -5 308 1 1700 283 57 77 chr12 54721375 54722112 -89064343 + L2 LINE L2 2000 2713 -601 1915 142 40 10 chr12 54722114 54722417 -89064038 + AluSx SINE Alu 1 312 0 697 151 17 0 chr12 54722430 54722549 -89063906 + FLAM_A SINE Alu 21 141 -1 1826 119 97 4 chr12 54723078 54723347 -89063108 - AluSx SINE Alu -17 295 2 698 191 56 0 chr12 54723977 54724103 -89062352 + FLAM_A SINE Alu 1 133 0 2404 104 0 0 chr12 54724103 54724412 -89062043 + AluSc SINE Alu 1 309 0 2170 120 0 19 chr12 54724499 54724808 -89061647 + AluSx SINE Alu 1 303 -9 666 283 39 13 chr12 54724989 54725222 -89061233 + MER102b DNA MER1_type 1 239 -102 424 296 21 21 chr12 54725256 54725398 -89061057 - MLT1J2 LTR MaLR -44 406 265 344 347 16 0 chr12 54725575 54725699 -89060756 + MER102b DNA MER1_type 216 341 0 2446 54 0 0 chr12 54726147 54726457 -89059998 - AluY SINE Alu 0 310 1 378 0 0 0 chr12 54726457 54726499 -89059956 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2186 103 0 4 chr12 54726499 54726780 -89059675 - AluSg SINE Alu -30 280 1 2397 95 0 16 chr12 54726794 54727109 -89059346 - AluSg SINE Alu 0 310 1 223 37 0 0 chr12 54727122 54727149 -89059306 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1732 144 14 41 chr12 54727149 54727441 -89059014 - AluJb SINE Alu -28 284 1 2470 51 0 16 chr12 54727592 54727904 -89058551 - AluY SINE Alu 0 311 5 2116 116 7 0 chr12 54728506 54728800 -89057655 + AluSx SINE Alu 1 296 -16 1371 198 8 4 chr12 54728882 54729129 -89057326 + AluJo SINE Alu 1 248 -64 1892 86 65 7 chr12 54729151 54729430 -89057025 + AluSc SINE Alu 1 295 -14 248 268 9 89 chr12 54730280 54730392 -89056063 + MIR SINE MIR 42 144 -64 1399 156 48 51 chr12 54730399 54730694 -89055761 + AluJb SINE Alu 1 294 -18 2213 96 3 3 chr12 54730697 54730999 -89055456 + AluSq SINE Alu 1 302 -11 252 0 0 0 chr12 54732411 54732439 -89054016 + (T)n Simple_repeat Simple_repeat 1 28 0 2202 93 0 0 chr12 54733745 54734034 -89052421 + AluSg SINE Alu 1 289 -21 1101 101 0 67 chr12 54734232 54734410 -89052045 + AluSx SINE Alu 1 166 -146 216 178 27 82 chr12 54734560 54734633 -89051822 + G-rich Low_complexity Low_complexity 1 69 0 294 289 39 83 chr12 54735704 54735860 -89050595 - L2 LINE L2 -6 3266 3118 325 306 117 0 chr12 54735958 54736069 -89050386 - L2 LINE L2 -5 3267 3144 192 284 80 23 chr12 54736236 54736324 -89050131 - L2 LINE L2 -262 3010 2918 552 290 78 5 chr12 54736844 54737037 -89049418 - MIR SINE MIR -28 234 28 1581 120 8 4 chr12 54737445 54737686 -89048769 - AluSg SINE Alu -68 242 1 631 284 104 9 chr12 54739903 54740125 -89046330 - MIR SINE MIR 0 262 20 338 178 218 30 chr12 54740300 54740401 -89046054 + L2 LINE L2 3189 3308 -5 567 259 19 31 chr12 54740410 54740572 -89045883 - MIR SINE MIR -93 169 10 217 224 0 17 chr12 54742087 54742145 -89044310 + (TG)n Simple_repeat Simple_repeat 1 57 0 26 0 0 0 chr12 54743879 54743905 -89042550 + AT_rich Low_complexity Low_complexity 1 26 0 647 266 53 34 chr12 54748127 54748334 -89038121 + MIR SINE MIR 40 250 -12 536 266 105 0 chr12 54749589 54749732 -89036723 - MER91B DNA MER1_type -32 158 1 1972 121 20 0 chr12 54751320 54751618 -89034837 - AluSx SINE Alu -3 309 6 748 194 0 0 chr12 54751618 54751747 -89034708 - FLAM_C SINE Alu -6 137 9 1590 187 15 53 chr12 54753088 54753430 -89033025 + MLT1A2 LTR MaLR 35 363 -11 210 143 0 0 chr12 54753733 54753768 -89032687 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 2174 123 0 0 chr12 54754202 54754510 -89031945 + AluSx SINE Alu 3 310 -2 824 115 0 0 chr12 54754510 54754623 -89031832 + L1PA10 LINE L1 6053 6165 -3 292 176 0 0 chr12 54755198 54755249 -89031206 + Alu SINE Alu 246 296 -6 435 246 89 37 chr12 54755391 54755567 -89030888 + MIR3 SINE MIR 10 202 -6 24 32 0 0 chr12 54755861 54755892 -89030563 + AT_rich Low_complexity Low_complexity 1 31 0 446 142 291 37 chr12 54755934 54756068 -89030387 + L1MB5 LINE L1 4601 4768 -1378 791 221 76 0 chr12 54756069 54756227 -89030228 + FRAM SINE Alu 1 166 -10 575 205 39 45 chr12 54756227 54756383 -89030072 + L1MB5 LINE L1 4766 4920 -1226 2082 100 4 0 chr12 54756383 54756664 -89029791 + AluSq SINE Alu 1 282 -31 590 152 54 9 chr12 54756664 54756776 -89029679 - AluSc SINE Alu -7 302 186 4051 156 53 64 chr12 54756906 54757088 -89029367 + L1MB5 LINE L1 5257 5439 -735 2172 132 0 0 chr12 54757088 54757398 -89029057 + AluSx SINE Alu 3 312 0 4051 156 53 64 chr12 54757398 54757820 -89028635 + L1MB5 LINE L1 5439 5850 -324 2172 108 0 0 chr12 54757820 54758117 -89028338 + AluSq SINE Alu 3 299 -14 4051 156 53 64 chr12 54758117 54758439 -89028016 + L1MB5 LINE L1 5850 6174 0 1892 124 36 16 chr12 54758541 54758847 -89027608 - AluSx SINE Alu 0 312 1 310 254 17 87 chr12 54758847 54758905 -89027550 - L1MC/D LINE L1 -2066 5742 5682 1681 163 3 13 chr12 54758905 54759211 -89027244 - AluJb SINE Alu -9 303 1 310 254 17 87 chr12 54759211 54759325 -89027130 - L1MC/D LINE L1 -2126 5682 5582 270 305 0 12 chr12 54759349 54759431 -89027024 - L1MC/D LINE L1 -2205 5603 5523 195 42 0 0 chr12 54760111 54760135 -89026320 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 185 194 0 0 chr12 54760613 54760644 -89025811 + L2 LINE L2 3218 3248 -24 523 236 99 63 chr12 54761126 54761317 -89025138 - MIR SINE MIR -12 250 53 735 131 0 73 chr12 54761335 54761357 -89025098 - FLAM_A SINE Alu -169 142 120 1869 134 0 52 chr12 54761357 54761686 -89024769 - AluSx SINE Alu 0 312 1 735 131 0 73 chr12 54761686 54761800 -89024655 - FLAM_A SINE Alu -191 120 16 187 279 0 33 chr12 54761802 54761863 -89024592 - MIR3 SINE MIR -136 72 14 717 274 81 26 chr12 54761959 54762193 -89024262 + MIR SINE MIR 1 247 -15 397 345 0 7 chr12 54762517 54762656 -89023799 + L2 LINE L2 3127 3264 -8 2264 115 0 0 chr12 54763332 54763645 -89022810 + AluSq SINE Alu 1 313 0 2001 104 4 4 chr12 54763787 54764065 -89022390 + AluSx SINE Alu 1 278 -34 392 212 271 0 chr12 54766000 54766118 -89020337 + MER3 DNA MER1_type 6 155 -54 948 210 0 6 chr12 54766136 54766330 -89020125 - FAM SINE Alu 0 175 1 235 252 122 28 chr12 54766330 54766437 -89020018 - MIR SINE MIR -56 206 90 393 22 0 0 chr12 54766460 54766506 -89019949 + (CA)n Simple_repeat Simple_repeat 2 47 0 592 167 202 0 chr12 54766855 54766969 -89019486 - MER3 DNA MER1_type -72 137 1 278 302 12 12 chr12 54766975 54767061 -89019394 - MIR SINE MIR -157 105 20 183 233 133 22 chr12 54770161 54770251 -89016204 + MIR3 SINE MIR 105 204 -4 241 290 0 0 chr12 54770536 54770605 -89015850 - MIR SINE MIR -62 146 78 195 222 0 0 chr12 54770878 54770923 -89015532 + (TG)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr12 54772839 54772869 -89013586 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 54774086 54774111 -89012344 + GC_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 54775276 54775297 -89011158 + GC_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 54775786 54775832 -89010623 + GC_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr12 54775873 54775908 -89010547 + GC_rich Low_complexity Low_complexity 1 35 0 461 152 54 0 chr12 54776272 54776384 -89010071 + GA-rich Low_complexity Low_complexity 2 119 0 241 161 18 18 chr12 54777374 54777430 -89009025 + Alu SINE Alu 239 294 -7 494 277 66 0 chr12 54777437 54777603 -89008852 - L1M4 LINE L1 -2314 3832 3656 946 198 24 24 chr12 54777619 54777724 -89008731 + L1M4 LINE L1 2725 2829 -3317 1257 244 0 63 chr12 54777724 54778043 -89008412 + AluJb SINE Alu 2 300 -2 946 198 24 24 chr12 54778043 54778189 -89008266 + L1M4 LINE L1 2828 2976 -3170 1013 120 0 0 chr12 54778216 54778349 -89008106 + AluSq/x SINE Alu 1 133 -179 817 206 85 0 chr12 54778382 54778605 -89007850 + L1M4 LINE L1 2981 3222 -2924 2256 203 42 38 chr12 54778611 54779163 -89007292 - MLT2B3 LTR ERVL 0 554 1 435 226 137 0 chr12 54779163 54779265 -89007190 + AluJo/FLAM SINE Alu 1 116 -186 1180 216 127 0 chr12 54779266 54779534 -89006921 + AluJo SINE Alu 1 302 0 281 182 0 0 chr12 54779551 54779595 -89006860 - MER66A LTR ERV1 -141 337 294 1055 171 6 6 chr12 54779602 54779772 -89006683 - AluSx SINE Alu -11 299 130 320 309 25 0 chr12 54779806 54779887 -89006568 - L1MC4 LINE L1 -1343 6699 6617 820 81 0 0 chr12 54779887 54779986 -89006469 - AluSx SINE Alu -176 136 38 209 152 25 25 chr12 54779986 54780065 -89006390 + (TA)n Simple_repeat Simple_repeat 2 80 0 35 54 0 0 chr12 54780065 54780121 -89006334 + AT_rich Low_complexity Low_complexity 1 56 0 788 93 0 0 chr12 54780121 54780228 -89006227 - U6 snRNA snRNA 0 107 1 591 156 0 0 chr12 54780232 54780322 -89006133 - AluJ/FLAM SINE Alu -221 91 2 746 253 70 0 chr12 54780324 54780581 -89005874 - L1M4 LINE L1 -2877 3269 2995 1344 240 54 98 chr12 54780703 54780766 -89005689 - MER77 LTR ERV1 -3 602 538 2024 108 27 34 chr12 54780766 54781062 -89005393 + AluSx SINE Alu 1 294 -18 1344 240 54 98 chr12 54781062 54781483 -89004972 - MER77 LTR ERV1 -67 538 144 845 176 54 0 chr12 54781483 54781631 -89004824 - FRAM SINE Alu -10 156 1 1344 240 54 98 chr12 54781631 54781719 -89004736 - MER77 LTR ERV1 -461 144 54 1660 178 17 24 chr12 54781762 54782097 -89004358 - AluJo SINE Alu 0 312 1 1113 134 13 16 chr12 54782112 54782390 -89004065 - MER46A DNA MER2_type 0 236 2 2299 85 24 3 chr12 54782410 54782705 -89003750 + AluSx SINE Alu 1 301 -11 333 233 0 0 chr12 54782705 54782791 -89003664 - L1M4 LINE L1 -2198 3948 3863 821 81 7 22 chr12 54782793 54782929 -89003526 + MER4A LTR ERV1 3 136 -528 2144 80 77 0 chr12 54782930 54783216 -89003239 + AluSg SINE Alu 1 308 -2 2570 51 10 16 chr12 54783216 54783529 -89002926 + AluY SINE Alu 1 311 0 1304 184 81 115 chr12 54784886 54785457 -89000998 + MER4A LTR ERV1 116 872 0 556 245 46 69 chr12 54785457 54785504 -89000951 - L1M4 LINE L1 -2280 3866 3819 2532 67 7 0 chr12 54785504 54785802 -89000653 + AluY SINE Alu 1 300 -11 556 245 46 69 chr12 54785802 54785970 -89000485 - L1M4 LINE L1 -2327 3819 3656 946 198 24 24 chr12 54785986 54786091 -89000364 + L1M4 LINE L1 2725 2829 -3317 1144 244 0 63 chr12 54786091 54786410 -89000045 + AluJb SINE Alu 2 300 -2 946 198 24 24 chr12 54786410 54786556 -88999899 + L1M4 LINE L1 2828 2976 -3170 1013 120 0 0 chr12 54786583 54786716 -88999739 + AluSq/x SINE Alu 1 133 -180 890 201 75 111 chr12 54786749 54786978 -88999477 + L1M4 LINE L1 2981 3217 -2929 2256 203 42 38 chr12 54786978 54787530 -88998925 - MLT2B3 LTR ERVL 0 554 1 435 226 137 0 chr12 54787530 54787632 -88998823 + AluJo/FLAM SINE Alu 1 116 -186 2166 133 0 13 chr12 54787633 54787942 -88998513 + AluSx SINE Alu 1 305 -7 890 201 75 111 chr12 54787942 54788152 -88998303 + L1M4 LINE L1 3215 3407 -2739 1105 211 135 0 chr12 54788152 54788418 -88998037 + AluJo SINE Alu 1 302 0 281 182 0 0 chr12 54788435 54788479 -88997976 - MER66B LTR ERV1 -141 345 302 356 256 96 26 chr12 54789188 54789344 -88997111 + MIR3 SINE MIR 14 180 -28 2405 78 0 0 chr12 54789345 54789660 -88996795 - AluSp SINE Alu 0 316 2 1492 118 83 168 chr12 54789663 54790002 -88996453 - AluJb SINE Alu -2 310 1 362 248 70 31 chr12 54790017 54790146 -88996309 + L3 LINE CR1 1253 1386 -191 698 100 60 0 chr12 54790471 54790571 -88995884 + AluSq/x SINE Alu 13 118 -195 2211 113 0 3 chr12 54790571 54790862 -88995593 + AluSg SINE Alu 1 290 -20 267 85 0 51 chr12 54790870 54790921 -88995534 + (GGAA)n Simple_repeat Simple_repeat 3 52 -6 200 35 35 0 chr12 54790921 54790950 -88995505 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 267 85 0 51 chr12 54790950 54790957 -88995498 + (GGAA)n Simple_repeat Simple_repeat 52 58 0 415 108 65 32 chr12 54791415 54791508 -88994947 - MER41B LTR ERV1 -35 600 505 2022 152 0 10 chr12 54791509 54791806 -88994649 + AluJb SINE Alu 1 294 -18 2880 0 3 3 chr12 54791809 54792116 -88994339 + AluYa5 SINE Alu 1 307 -4 2627 37 0 7 chr12 54792116 54792409 -88994046 + AluY SINE Alu 1 292 -19 7703 65 33 2 chr12 54792411 54793541 -88992914 + PABL_A-int LTR ERV1 1902 3066 -1949 1231 145 5 16 chr12 54793684 54793870 -88992585 - AluJo SINE Alu -128 184 1 287 149 45 0 chr12 54793872 54793939 -88992516 + L1MB7 LINE L1 6114 6183 -1 690 131 8 3 chr12 54793979 54794215 -88992240 + AluSx SINE Alu 1 310 0 230 232 36 0 chr12 54794394 54794450 -88992005 - Tigger5 DNA MER2_type -1 2322 2265 2105 121 7 3 chr12 54795340 54795637 -88990818 - AluSx SINE Alu -14 298 1 1720 112 24 12 chr12 54795915 54796165 -88990290 - AluSc SINE Alu -56 253 1 27 0 0 0 chr12 54796165 54796192 -88990263 + AT_rich Low_complexity Low_complexity 1 27 0 1526 113 92 13 chr12 54797063 54797302 -88989153 + AluY SINE Alu 39 296 -15 2146 114 17 0 chr12 54797574 54797863 -88988592 + AluSx SINE Alu 1 294 -18 1562 190 39 0 chr12 54798137 54798416 -88988039 + AluJb SINE Alu 9 298 -14 757 224 50 0 chr12 54798417 54798578 -88987877 + AluJb SINE Alu 134 302 -10 2356 64 34 7 chr12 54798597 54798894 -88987561 - AluSc SINE Alu -2 307 3 254 234 84 28 chr12 54798943 54799050 -88987405 - MIR SINE MIR 0 262 150 1800 180 3 7 chr12 54799463 54799763 -88986692 - AluJb SINE Alu -13 299 1 2000 124 50 0 chr12 54800349 54800632 -88985823 + AluSx SINE Alu 1 297 -15 2348 91 3 13 chr12 54800848 54801157 -88985298 - AluSp SINE Alu -7 306 1 2161 122 3 25 chr12 54801185 54801505 -88984950 - AluSp SINE Alu 0 313 1 2517 87 0 0 chr12 54801518 54801827 -88984628 - AluSc SINE Alu 0 309 1 535 238 113 24 chr12 54802256 54802424 -88984031 + MER20B DNA MER1_type 1 183 -600 393 260 26 58 chr12 54802561 54802715 -88983740 + L1MC4 LINE L1 7789 7937 -105 198 0 0 0 chr12 54803143 54803165 -88983290 + (T)n Simple_repeat Simple_repeat 1 22 0 1047 167 198 28 chr12 54803389 54803543 -88982912 - AluJb SINE Alu -10 302 176 2602 74 0 0 chr12 54803543 54803854 -88982601 - AluY SINE Alu 0 311 1 1047 167 198 28 chr12 54803854 54803951 -88982504 - AluJb SINE Alu -136 176 8 1615 119 126 0 chr12 54804009 54804270 -88982185 - AluSg SINE Alu -6 294 1 2213 112 6 3 chr12 54804286 54804598 -88981857 - AluSq SINE Alu 0 313 1 1498 147 23 31 chr12 54804601 54804859 -88981596 - AluJo SINE Alu -18 294 39 1143 202 162 0 chr12 54804919 54805172 -88981283 - AluJb SINE Alu -8 294 1 402 259 182 21 chr12 54805937 54806080 -88980375 - MER63A DNA MER1_type -3 207 42 1122 87 41 23 chr12 54806145 54806317 -88980138 + AluSg/x SINE Alu 122 296 -16 2294 81 3 17 chr12 54806719 54807016 -88979439 + AluSg SINE Alu 1 293 -17 252 0 0 0 chr12 54810612 54810640 -88975815 + (T)n Simple_repeat Simple_repeat 1 28 0 2120 120 0 3 chr12 54811516 54811799 -88974656 + AluSg SINE Alu 1 282 -28 1848 147 33 4 chr12 54811800 54812073 -88974382 + AluJo SINE Alu 11 291 -21 1901 122 28 7 chr12 54814396 54814682 -88971773 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr12 54815362 54815386 -88971069 + GC_rich Low_complexity Low_complexity 1 24 0 76 71 0 0 chr12 54816465 54816577 -88969878 + GC_rich Low_complexity Low_complexity 1 112 0 233 226 24 54 chr12 54816597 54816765 -88969690 + G-rich Low_complexity Low_complexity 3 165 0 225 280 0 40 chr12 54820260 54820335 -88966120 - L3 LINE CR1 -7 1570 1499 250 297 0 0 chr12 54821924 54821998 -88964457 + GA-rich Low_complexity Low_complexity 2 75 0 1547 107 11 96 chr12 54823831 54824112 -88962343 - AluSx SINE Alu 0 312 56 1122 99 0 0 chr12 54824113 54824255 -88962200 - AluSq/x SINE Alu -170 142 1 2078 95 14 28 chr12 54825245 54825560 -88960895 + AluSx SINE Alu 1 311 0 1852 180 75 13 chr12 54825560 54825948 -88960507 - MLT1C LTR MaLR -53 414 3 239 254 99 14 chr12 54825961 54826032 -88960423 - MIR SINE MIR -117 145 69 433 256 139 22 chr12 54826336 54826473 -88959982 - L2 LINE L2 -2 3311 3159 230 146 0 0 chr12 54826570 54826611 -88959844 + L3b LINE CR1 1345 1385 -198 202 56 56 0 chr12 54827656 54827692 -88958763 + (CAGG)n Simple_repeat Simple_repeat 3 40 0 205 254 63 16 chr12 54832097 54832160 -88954295 - MER5A DNA MER1_type -81 108 43 269 50 0 25 chr12 54832640 54832680 -88953775 + (CCCCAG)n Simple_repeat Simple_repeat 2 40 0 255 189 0 0 chr12 54835518 54835571 -88950884 + CT-rich Low_complexity Low_complexity 3 55 0 2184 103 10 0 chr12 54836002 54836302 -88950153 + AluSx SINE Alu 1 303 -9 361 318 28 45 chr12 54839667 54839843 -88946612 + MIR SINE MIR 31 203 -59 816 189 85 0 chr12 54840762 54840915 -88945540 + FRAM SINE Alu 1 166 0 2558 37 0 0 chr12 54842734 54843034 -88943421 + AluY SINE Alu 1 300 -11 691 242 5 32 chr12 54845281 54845471 -88940984 - L3b LINE CR1 -215 1368 1184 1882 102 0 4 chr12 54845887 54846142 -88940313 + AluSx SINE Alu 51 304 -8 680 311 164 29 chr12 54846569 54847076 -88939379 - L2 LINE L2 -1 3312 2874 1667 170 31 3 chr12 54847076 54847370 -88939085 + AluJo SINE Alu 1 302 -10 2126 96 14 7 chr12 54847380 54847672 -88938783 + AluSg SINE Alu 3 296 -14 680 311 164 29 chr12 54847672 54847854 -88938601 - L2 LINE L2 -446 2867 2531 234 339 87 0 chr12 54848884 54848999 -88937456 - MIR SINE MIR -10 252 128 2400 41 0 7 chr12 54849386 54849679 -88936776 - AluY SINE Alu -20 291 1 209 345 26 0 chr12 54849680 54849793 -88936662 + L2 LINE L2 3123 3238 -75 190 347 211 7 chr12 54849872 54850019 -88936436 + MIR3 SINE MIR 8 184 -24 725 217 15 153 chr12 54850440 54850501 -88935954 - L1ME1 LINE L1 -5 6161 6093 866 174 0 0 chr12 54850501 54850633 -88935822 - FLAM_C SINE Alu -1 132 1 725 217 15 153 chr12 54850633 54850801 -88935654 - L1ME1 LINE L1 -73 6093 6006 1987 95 62 0 chr12 54850801 54851074 -88935381 - AluSg SINE Alu -20 290 1 725 217 15 153 chr12 54851074 54851235 -88935220 - L1ME1 LINE L1 -160 6006 5824 777 192 0 0 chr12 54851235 54851365 -88935090 - FRAM SINE Alu -9 167 38 1717 192 42 63 chr12 54851368 54851518 -88934937 - L1ME1 LINE L1 -347 5819 5667 1773 136 0 29 chr12 54851518 54851798 -88934657 - AluSx SINE Alu -6 306 35 1717 192 42 63 chr12 54851798 54852360 -88934095 - L1ME1 LINE L1 -499 5667 5176 1641 187 3 13 chr12 54852362 54852661 -88933794 + AluJo SINE Alu 1 296 -16 2186 83 3 20 chr12 54852666 54852967 -88933488 + AluSp SINE Alu 2 297 -16 1956 133 10 3 chr12 54852969 54853271 -88933184 + AluSx SINE Alu 1 304 -8 1544 183 4 7 chr12 54853320 54853594 -88932861 - AluJb SINE Alu -39 273 1 1115 191 115 73 chr12 54853606 54853730 -88932725 - L1ME1 LINE L1 -1379 4767 4650 2145 100 3 10 chr12 54853730 54854030 -88932425 + AluSp SINE Alu 1 298 -15 1115 191 115 73 chr12 54854030 54854382 -88932073 - L1ME1 LINE L1 -1496 4650 4271 1234 92 29 12 chr12 54854944 54855117 -88931338 + L1PA11 LINE L1 5999 6174 0 311 280 73 24 chr12 54855155 54855290 -88931165 + MIR SINE MIR 47 192 -54 2270 104 0 0 chr12 54855291 54855599 -88930856 + AluSg SINE Alu 1 308 -2 227 190 69 17 chr12 54855804 54855862 -88930593 - L2 LINE L2 -2 3270 3210 401 309 104 23 chr12 54856084 54856304 -88930151 + L2 LINE L2 2939 3176 -96 316 362 104 9 chr12 54856500 54856721 -88929734 - L2 LINE L2 -529 2785 2544 2063 88 35 0 chr12 54856724 54857007 -88929448 + AluSx SINE Alu 11 303 -9 1322 239 26 0 chr12 54857008 54857314 -88929141 - L1MD3 LINE L1 -12 7983 7670 1488 163 35 4 chr12 54857318 54857575 -88928880 - L1PA15 LINE L1 0 6165 5901 2178 121 0 0 chr12 54857576 54857883 -88928572 - AluSg SINE Alu -3 307 1 1963 117 0 42 chr12 54857885 54858193 -88928262 - AluSx SINE Alu -17 295 1 1637 171 17 17 chr12 54858195 54858493 -88927962 - AluJo SINE Alu -14 298 1 291 305 193 41 chr12 54858522 54858719 -88927736 + MIR SINE MIR 2 228 -34 223 178 0 22 chr12 54860364 54860409 -88926046 + GA-rich Low_complexity Low_complexity 5 48 0 182 288 110 14 chr12 54860961 54861034 -88925421 - L2 LINE L2 -51 3262 3183 2138 108 10 0 chr12 54861734 54862031 -88924424 + AluSx SINE Alu 1 300 -12 418 256 130 19 chr12 54862097 54862366 -88924089 + L1ME4a LINE L1 5741 6039 -82 2261 102 0 0 chr12 54862546 54862849 -88923606 + AluSx SINE Alu 1 303 -9 1521 198 16 23 chr12 54862898 54863201 -88923254 + AluJo SINE Alu 1 301 -11 973 96 7 7 chr12 54863248 54863394 -88923061 + L1PA6 LINE L1 6005 6150 -4 2176 88 3 3 chr12 54863660 54863954 -88922501 - AluSq SINE Alu -19 294 1 257 245 189 35 chr12 54864620 54864763 -88921692 + L2 LINE L2 3146 3310 -3 2148 39 0 4 chr12 54864809 54865068 -88921387 - AluY SINE Alu -14 297 40 688 171 8 8 chr12 54865075 54865192 -88921263 - FLAM_C SINE Alu -25 118 2 225 313 119 0 chr12 54865194 54865261 -88921194 - MIR SINE MIR -173 89 15 189 0 0 0 chr12 54865520 54865541 -88920914 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1048 118 0 0 chr12 54867151 54867303 -88919152 + AluSp/q SINE Alu 162 313 0 241 162 0 0 chr12 54867413 54867450 -88919005 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 830 211 4 59 chr12 54867458 54867728 -88918727 - L1MC4 LINE L1 0 8042 7788 1329 83 0 0 chr12 54867731 54867900 -88918555 + AluSg/x SINE Alu 132 300 -10 1533 190 0 30 chr12 54867910 54868215 -88918240 + AluJo SINE Alu 1 296 -16 2364 234 56 49 chr12 54868220 54868797 -88917658 - L1MC4 LINE L1 -244 7798 7227 2456 176 54 11 chr12 54868797 54869263 -88917192 + MER66B LTR ERV1 1 486 0 2364 234 56 49 chr12 54869263 54869292 -88917163 - L1MC4 LINE L1 -815 7227 7200 1965 135 0 29 chr12 54869292 54869604 -88916851 - AluSx SINE Alu -9 303 1 2364 234 56 49 chr12 54869604 54869853 -88916602 - L1MC4 LINE L1 -842 7200 6936 288 0 0 0 chr12 54869861 54869893 -88916562 + (TG)n Simple_repeat Simple_repeat 1 32 0 687 171 0 0 chr12 54869894 54869999 -88916456 - FLAM_C SINE Alu -28 115 11 2153 96 0 35 chr12 54870026 54870202 -88916253 - AluSx SINE Alu -11 301 139 2409 67 0 16 chr12 54870202 54870517 -88915938 - AluY SINE Alu -1 310 1 2153 96 0 35 chr12 54870517 54870652 -88915803 - AluSx SINE Alu -173 139 1 180 0 0 0 chr12 54870660 54870680 -88915775 + (T)n Simple_repeat Simple_repeat 1 20 0 815 242 0 16 chr12 54870683 54870865 -88915590 - L1MC4 LINE L1 -1130 6912 6734 2011 97 0 69 chr12 54871065 54871385 -88915070 - AluY SINE Alu -13 298 1 2183 80 20 3 chr12 54871442 54871744 -88914711 - AluSp SINE Alu -6 307 1 856 113 8 0 chr12 54871832 54871965 -88914490 + AluSg/x SINE Alu 177 310 -2 460 82 0 0 chr12 54872044 54872105 -88914350 + Alu SINE Alu 1 61 -257 2011 111 4 0 chr12 54872240 54872519 -88913936 - AluSp SINE Alu -33 280 1 938 98 0 15 chr12 54872519 54872652 -88913803 - AluSq/x SINE Alu -180 133 3 2477 59 7 0 chr12 54872882 54873189 -88913266 - AluY SINE Alu -2 309 1 295 288 162 0 chr12 54873260 54873371 -88913084 + MER5A DNA MER1_type 61 189 0 328 277 88 7 chr12 54873373 54873510 -88912945 + L2 LINE L2 2320 2467 -847 818 198 9 69 chr12 54873583 54873800 -88912655 - AluJo SINE Alu -19 293 90 252 269 144 0 chr12 54873913 54874073 -88912382 + AluSq SINE Alu 41 223 -80 2114 119 0 7 chr12 54874449 54874752 -88911703 - AluSx SINE Alu -10 302 2 268 320 115 8 chr12 54874752 54874874 -88911581 + MIR SINE MIR 122 256 -6 2233 100 0 6 chr12 54874893 54875204 -88911251 + AluSc SINE Alu 1 309 0 2405 72 0 3 chr12 54875269 54875576 -88910879 + AluY SINE Alu 5 310 -1 660 125 0 0 chr12 54875581 54875669 -88910786 + AluSg SINE Alu 2 89 -221 395 171 48 0 chr12 54876131 54876236 -88910219 - PABL_A-int LTR ERV1 -3755 1260 1151 * 6236 74 8 48 chr12 54876228 54876493 -88909962 - PABL_A-int LTR ERV1 -4116 899 625 2293 96 7 0 chr12 54876493 54876796 -88909659 + AluSp SINE Alu 1 305 -8 6236 74 8 48 chr12 54876796 54876997 -88909458 - PABL_A-int LTR ERV1 -4390 625 418 2242 99 20 0 chr12 54876997 54877300 -88909155 - AluSg1 SINE Alu 0 309 1 6236 74 8 48 chr12 54877300 54877768 -88908687 - PABL_A-int LTR ERV1 -4597 418 1 956 73 0 0 chr12 54877768 54877891 -88908564 - PABL_A LTR ERV1 0 660 538 1947 133 7 0 chr12 54877994 54878288 -88908167 - AluSc SINE Alu -13 296 1 1557 231 60 16 chr12 54878289 54878787 -88907668 - L1M4 LINE L1 -2364 3782 3263 1138 181 0 54 chr12 54878787 54879008 -88907447 - AluJo SINE Alu -7 305 97 381 259 99 0 chr12 54879008 54879089 -88907366 + L1MC4 LINE L1 6620 6708 -1334 2139 97 7 7 chr12 54879241 54879531 -88906924 - AluSp SINE Alu -21 292 5 545 213 154 35 chr12 54880168 54880337 -88906118 - MER20 DNA MER1_type 0 219 31 663 165 0 0 chr12 54880652 54880771 -88905684 + AluSg/x SINE Alu 194 312 0 2504 87 62 9 chr12 54880773 54880984 -88905471 + PABL_A-int LTR ERV1 3249 3447 -1568 2279 123 0 0 chr12 54880984 54881284 -88905171 - AluSg SINE Alu -10 300 1 2504 87 62 9 chr12 54881284 54881510 -88904945 + PABL_A-int LTR ERV1 3447 3709 -1306 559 238 24 0 chr12 54881833 54881959 -88904496 - FLAM_C SINE Alu -4 129 1 2272 96 0 23 chr12 54883674 54883977 -88902478 + AluSx SINE Alu 11 306 -6 1084 132 29 17 chr12 54883977 54884151 -88902304 + AluSg/x SINE Alu 132 307 -3 2502 170 22 10 chr12 54884179 54884668 -88901787 + L1MB8 LINE L1 5616 6110 -68 1250 102 5 56 chr12 54884669 54884802 -88901653 + AluSc SINE Alu 1 139 -170 2400 63 23 3 chr12 54884802 54885101 -88901354 + AluSp SINE Alu 2 306 -7 2510 68 7 0 chr12 54885101 54885410 -88901045 + AluY SINE Alu 1 311 0 1250 102 5 56 chr12 54885410 54885471 -88900984 + AluSc SINE Alu 137 186 -123 436 230 83 99 chr12 54885481 54885903 -88900552 + L1ME4a LINE L1 5658 6072 -49 24 32 0 0 chr12 54886120 54886151 -88900304 + AT_rich Low_complexity Low_complexity 1 31 0 1971 157 13 0 chr12 54886151 54886457 -88899998 + AluSx SINE Alu 1 310 -2 1745 178 0 14 chr12 54886475 54886756 -88899699 + AluSx SINE Alu 14 290 -22 2403 94 0 0 chr12 54886758 54887065 -88899390 + AluY SINE Alu 1 307 -4 1328 146 32 18 chr12 54887202 54887422 -88899033 + AluSg SINE Alu 1 223 -87 798 176 0 16 chr12 54887731 54887856 -88898599 - FLAM_A SINE Alu -10 123 1 187 294 167 16 chr12 54887950 54887993 -88898462 + L2 LINE L2 3161 3196 -117 2013 160 0 3 chr12 54887993 54888299 -88898156 - AluSc SINE Alu -4 305 1 187 294 167 16 chr12 54888299 54888381 -88898074 + L2 LINE L2 3196 3305 -8 2071 146 3 0 chr12 54888631 54888926 -88897529 - AluSx SINE Alu -16 296 1 610 175 10 0 chr12 54888973 54889070 -88897385 + FLAM_A SINE Alu 18 115 -27 2486 82 0 0 chr12 54889071 54889377 -88897078 + AluY SINE Alu 1 306 -5 330 220 25 85 chr12 54889377 54889495 -88896960 - L1ME3 LINE L1 -43 6119 6009 2382 92 6 16 chr12 54889579 54889895 -88896560 - AluSq SINE Alu 0 313 1 2317 108 0 10 chr12 54890495 54890848 -88895607 + AluSx SINE Alu 1 350 0 2031 125 32 0 chr12 54891362 54891643 -88894812 + AluSx SINE Alu 1 290 -22 2419 96 0 6 chr12 54891830 54892142 -88894313 + AluSx SINE Alu 3 312 0 1770 156 10 31 chr12 54892339 54892655 -88893800 + AluJb SINE Alu 1 310 0 2339 104 10 0 chr12 54892661 54892968 -88893487 + AluSx SINE Alu 3 312 0 1562 130 54 4 chr12 54893566 54893805 -88892650 + AluSg SINE Alu 1 251 -59 305 216 0 0 chr12 54893829 54893880 -88892575 - MIR SINE MIR -196 66 16 441 107 0 0 chr12 54894220 54894276 -88892179 + Alu SINE Alu 2 57 -261 2123 93 26 0 chr12 54894276 54894546 -88891909 - AluSp SINE Alu -36 277 1 1446 186 8 16 chr12 54894703 54894961 -88891494 - AluJb SINE Alu -56 256 1 1070 201 0 0 chr12 54894970 54895149 -88891306 - AluJb SINE Alu 0 312 134 2349 100 3 0 chr12 54895150 54895450 -88891005 - AluSc SINE Alu -8 301 1 375 241 95 26 chr12 54895455 54895571 -88890884 - L1MC5 LINE L1 -224 7737 7614 2381 109 3 0 chr12 54895571 54895882 -88890573 - AluSx SINE Alu 0 312 1 480 237 48 31 chr12 54895984 54896198 -88890257 - L1MC5 LINE L1 -547 7495 7262 207 188 0 0 chr12 54896245 54896293 -88890162 + (CCCG)n Simple_repeat Simple_repeat 1 48 0 * 227 216 50 7 chr12 54896264 54896403 -88890052 + (CGCGG)n Simple_repeat Simple_repeat 2 146 0 * 256 238 0 60 chr12 54896311 54896496 -88889959 + (CCGGG)n Simple_repeat Simple_repeat 3 176 0 * 392 214 35 29 chr12 54896362 54896535 -88889920 + (CCGCG)n Simple_repeat Simple_repeat 3 176 0 202 156 62 16 chr12 54896506 54896570 -88889885 + (CGCGG)n Simple_repeat Simple_repeat 4 70 0 * 241 79 0 0 chr12 54896682 54896720 -88889735 + Alu SINE Alu 258 295 -7 2144 117 7 0 chr12 54896722 54897027 -88889428 + AluSx SINE Alu 1 307 0 2413 38 55 3 chr12 54897200 54897490 -88888965 - AluY SINE Alu -6 305 1 222 62 0 0 chr12 54898352 54898384 -88888071 + (TA)n Simple_repeat Simple_repeat 1 32 0 333 0 0 0 chr12 54899628 54899665 -88886790 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 54900093 54900115 -88886340 + AT_rich Low_complexity Low_complexity 1 22 0 606 157 75 0 chr12 54903394 54903528 -88882927 - L1MD3 LINE L1 -13 7982 7839 2369 69 17 0 chr12 54903529 54903817 -88882638 + AluY SINE Alu 1 293 -18 447 164 168 1 chr12 54903817 54903958 -88882497 - L1MC4a LINE L1 -721 7064 6883 984 92 0 8 chr12 54903977 54904107 -88882348 + AluSq/x SINE Alu 5 133 -179 730 77 0 43 chr12 54904223 54904373 -88882082 + AluY SINE Alu 190 311 0 2220 96 14 3 chr12 54904379 54904672 -88881783 - AluSp SINE Alu -17 296 1 1616 167 6 57 chr12 54904709 54904880 -88881575 - AluJo SINE Alu -11 301 152 2387 93 0 0 chr12 54904880 54905180 -88881275 - AluY SINE Alu -11 300 1 1616 167 6 57 chr12 54905180 54905325 -88881130 - AluJo SINE Alu -160 152 1 2316 92 0 0 chr12 54905354 54905647 -88880808 - AluSg1 SINE Alu -16 293 1 36 23 0 0 chr12 54905652 54905695 -88880760 + AT_rich Low_complexity Low_complexity 1 43 0 2523 65 13 3 chr12 54905695 54906005 -88880450 - AluSp SINE Alu 0 313 1 2043 153 0 3 chr12 54906009 54906304 -88880151 - AluSx SINE Alu -18 294 1 2102 123 7 3 chr12 54906312 54906612 -88879843 - AluSx SINE Alu -11 301 1 919 178 13 0 chr12 54906624 54906776 -88879679 - AluJo/FRAM SINE Alu -25 287 134 2465 61 0 0 chr12 54906777 54907073 -88879382 - AluY SINE Alu -15 296 1 25 0 0 0 chr12 54907076 54907101 -88879354 + AT_rich Low_complexity Low_complexity 1 25 0 2222 102 0 7 chr12 54907356 54907650 -88878805 + AluSq SINE Alu 1 292 -21 2501 52 7 0 chr12 54907766 54908055 -88878400 + AluY SINE Alu 2 292 -19 447 164 168 1 chr12 54908055 54908196 -88878259 - L1MC4a LINE L1 -721 7064 6883 2006 113 24 3 chr12 54908212 54908503 -88877952 + AluSq SINE Alu 1 297 -16 2339 104 10 0 chr12 54908657 54908964 -88877491 - AluSx SINE Alu 0 312 3 1946 148 10 29 chr12 54908969 54909280 -88877175 - AluJb SINE Alu -1 311 7 334 292 35 124 chr12 54909286 54909456 -88876999 + L2 LINE L2 2964 3091 -181 2212 129 0 7 chr12 54909456 54909766 -88876689 - AluSg1 SINE Alu -1 308 1 334 292 35 124 chr12 54909766 54909934 -88876521 + L2 LINE L2 3091 3272 0 2206 99 3 36 chr12 54910026 54910211 -88876244 - AluSx SINE Alu -18 294 104 182 62 31 0 chr12 54910211 54910243 -88876212 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2373 50 7 0 chr12 54910243 54910521 -88875934 - AluY SINE Alu -31 280 1 2206 99 3 36 chr12 54910521 54910638 -88875817 - AluSx SINE Alu -206 106 1 2526 90 3 0 chr12 54912544 54912856 -88873599 - AluSq SINE Alu 0 313 1 207 315 0 33 chr12 54913711 54913803 -88872652 + CT-rich Low_complexity Low_complexity 2 90 0 288 0 0 0 chr12 54914161 54914193 -88872262 + (TCC)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr12 54914307 54914330 -88872125 + (TTG)n Simple_repeat Simple_repeat 2 24 0 255 190 0 0 chr12 54915528 54915586 -88870869 + (CA)n Simple_repeat Simple_repeat 2 59 0 222 103 0 88 chr12 54915910 54915978 -88870477 + (CAG)n Simple_repeat Simple_repeat 1 62 0 230 246 49 0 chr12 54916537 54916598 -88869857 + CT-rich Low_complexity Low_complexity 1 64 0 206 330 0 28 chr12 54916802 54916908 -88869547 + G-rich Low_complexity Low_complexity 4 106 0 216 299 0 15 chr12 54916965 54917032 -88869423 + G-rich Low_complexity Low_complexity 4 69 0 396 0 0 0 chr12 54917924 54917968 -88868487 + (TG)n Simple_repeat Simple_repeat 2 45 0 2523 78 3 0 chr12 54918824 54919131 -88867324 - AluSp SINE Alu -5 308 1 2120 102 30 16 chr12 54919132 54919435 -88867020 - AluSp SINE Alu -4 309 3 419 143 0 0 chr12 54919956 54920012 -88866443 + AluSg/x SINE Alu 195 250 -62 1335 98 64 10 chr12 54920012 54920215 -88866240 + AluY SINE Alu 83 296 -15 2173 93 0 4 chr12 54920215 54920518 -88865937 + AluSc SINE Alu 3 304 0 23 33 0 0 chr12 54920718 54920748 -88865707 + AT_rich Low_complexity Low_complexity 1 30 0 574 165 29 10 chr12 54920750 54920853 -88865602 - FRAM SINE Alu -71 105 1 1977 150 17 0 chr12 54920942 54921236 -88865219 - AluSq SINE Alu -14 299 1 815 111 0 0 chr12 54921390 54921498 -88864957 - AluSg/x SINE Alu -13 296 189 1851 100 115 7 chr12 54921499 54921778 -88864677 - AluSg1 SINE Alu 0 309 1 2257 121 7 0 chr12 54922200 54922505 -88863950 - AluSx SINE Alu -5 307 1 24 32 0 0 chr12 54922505 54922536 -88863919 + AT_rich Low_complexity Low_complexity 1 31 0 436 230 83 99 chr12 54922753 54923175 -88863280 - L1ME4a LINE L1 -49 6072 5658 1250 102 5 56 chr12 54923185 54923246 -88863209 - AluSc SINE Alu -123 186 123 2534 65 7 0 chr12 54923246 54923554 -88862901 - AluY SINE Alu -1 310 1 2429 60 23 3 chr12 54923554 54923853 -88862602 - AluSp SINE Alu -7 306 2 1250 102 5 56 chr12 54923853 54923986 -88862469 - AluSc SINE Alu -184 125 1 2538 169 20 10 chr12 54923987 54924477 -88861978 - L1MB8 LINE L1 -68 6110 5616 1110 126 29 17 chr12 54924505 54924679 -88861776 - AluSg/x SINE Alu -3 309 134 2165 100 7 23 chr12 54924679 54924978 -88861477 - AluSx SINE Alu -7 305 12 977 156 26 0 chr12 54925577 54925731 -88860724 + FRAM SINE Alu 1 157 -19 24 53 0 0 chr12 54928881 54928919 -88857536 + AT_rich Low_complexity Low_complexity 1 38 0 843 118 0 0 chr12 54928981 54929091 -88857364 - AluJb SINE Alu -12 300 191 829 158 0 0 chr12 54929114 54929234 -88857221 - AluJb SINE Alu -98 214 95 964 236 45 84 chr12 54929366 54929701 -88856754 - L2 LINE L2 -86 3227 2906 2245 72 3 23 chr12 54930232 54930537 -88855918 - AluSg SINE Alu -10 300 2 298 326 135 19 chr12 54930612 54930827 -88855628 - L2 LINE L2 -529 2785 2546 1127 85 17 62 chr12 54931380 54931557 -88854898 + AluSx SINE Alu 1 169 -143 2248 48 4 0 chr12 54931557 54931829 -88854626 + AluY SINE Alu 18 290 -21 473 317 139 32 chr12 54931927 54932090 -88854365 - L2 LINE L2 0 3313 3169 989 111 0 15 chr12 54932090 54932225 -88854230 - FLAM_C SINE Alu 0 133 1 473 317 139 32 chr12 54932225 54932370 -88854085 - L2 LINE L2 -144 3169 2972 966 192 37 33 chr12 54932370 54932584 -88853871 + AluJb SINE Alu 87 301 -11 556 309 58 44 chr12 54932588 54932863 -88853592 - L2 LINE L2 -339 2975 2697 782 146 15 15 chr12 54933671 54933801 -88852654 - FLAM_A SINE Alu 0 133 4 432 265 77 0 chr12 54934462 54934579 -88851876 + MIR SINE MIR 53 178 -84 1192 126 5 63 chr12 54934638 54934860 -88851595 + AluJb SINE Alu 87 295 -17 1273 90 42 5 chr12 54935070 54935259 -88851196 - AluSx SINE Alu -116 196 1 1963 119 3 14 chr12 54935279 54935564 -88850891 - AluSx SINE Alu -30 282 1 529 307 109 0 chr12 54935726 54935918 -88850537 + MIR SINE MIR 47 259 -3 1088 150 32 0 chr12 54936647 54936834 -88849621 + MER75 DNA T2_type 1 193 -321 1218 137 6 0 chr12 54936854 54937036 -88849419 - AluJb SINE Alu -127 185 3 2262 100 0 3 chr12 54937042 54937352 -88849103 - AluY SINE Alu -2 309 1 604 175 10 0 chr12 54937353 54937450 -88849005 - FLAM_A SINE Alu -27 115 18 1953 146 3 0 chr12 54937497 54937792 -88848663 + AluSx SINE Alu 1 296 -16 198 288 163 0 chr12 54938042 54938122 -88848333 - L2 LINE L2 -8 3305 3213 2150 66 0 73 chr12 54938124 54938278 -88848177 + AluY SINE Alu 1 122 -189 2155 106 0 3 chr12 54938278 54938570 -88847885 + AluSg SINE Alu 1 291 -19 2150 66 0 73 chr12 54938570 54938732 -88847723 + AluY SINE Alu 122 294 -17 817 130 0 0 chr12 54938732 54938847 -88847608 + AluSg/x SINE Alu 180 294 -18 2346 77 0 6 chr12 54938850 54939161 -88847294 + AluY SINE Alu 1 309 -2 1055 82 0 0 chr12 54939163 54939298 -88847157 + AluSq/x SINE Alu 1 135 -177 1832 109 11 7 chr12 54939298 54939574 -88846881 + AluSp SINE Alu 1 277 -36 432 107 0 0 chr12 54939574 54939630 -88846825 - Alu SINE Alu -261 57 2 288 216 0 0 chr12 54939970 54940021 -88846434 + MIR SINE MIR 16 66 -196 1444 159 43 0 chr12 54940044 54940276 -88846179 - AluSp SINE Alu -60 253 12 1300 152 49 33 chr12 54940311 54940555 -88845900 - AluJo SINE Alu -21 291 44 2293 19 4 4 chr12 54940565 54940836 -88845619 - AluYa5 SINE Alu -6 305 35 1078 58 0 22 chr12 54940950 54941087 -88845368 - AluSc SINE Alu -175 134 1 1925 100 36 17 chr12 54941088 54941389 -88845066 - AluSq SINE Alu -4 309 3 236 333 13 0 chr12 54941945 54942020 -88844435 - L2 LINE L2 -9 3263 3188 232 343 144 30 chr12 54942088 54942289 -88844166 + MIR SINE MIR 12 235 -27 905 138 0 0 chr12 54942388 54942518 -88843937 + AluSp SINE Alu 3 132 -181 2024 124 0 10 chr12 54942521 54942656 -88843799 + AluSq SINE Alu 1 136 -177 2242 87 0 7 chr12 54942656 54942965 -88843490 + AluSc SINE Alu 1 307 -2 2024 124 0 10 chr12 54942965 54943127 -88843328 + AluSq SINE Alu 136 295 -18 2149 111 7 3 chr12 54943376 54943683 -88842772 + AluSq SINE Alu 1 308 -5 2145 95 0 16 chr12 54943706 54944011 -88842444 + AluSq SINE Alu 1 300 -13 786 210 0 0 chr12 54944038 54944176 -88842279 + FRAM SINE Alu 1 137 -39 266 183 14 0 chr12 54944177 54944248 -88842207 + GA-rich Low_complexity Low_complexity 1 72 0 251 146 18 0 chr12 54944237 54944292 -88842163 + A-rich Low_complexity Low_complexity 3 58 0 * 289 274 97 32 chr12 54944294 54944385 -88842070 + FLAM_A SINE Alu 1 103 -199 1840 167 0 7 chr12 54944385 54944685 -88841770 - AluSx SINE Alu -10 302 5 289 274 97 32 chr12 54944685 54944717 -88841738 + FLAM_A SINE Alu 103 132 -170 326 98 0 49 chr12 54944914 54945008 -88841447 + Alu SINE Alu 243 300 0 2090 96 14 3 chr12 54945014 54945307 -88841148 - AluSp SINE Alu -17 296 1 1518 177 6 47 chr12 54945344 54945515 -88840940 - AluJo SINE Alu -8 304 150 2269 93 0 0 chr12 54945515 54945815 -88840640 - AluY SINE Alu -11 300 1 1518 177 6 47 chr12 54945815 54945960 -88840495 - AluJo SINE Alu -162 150 1 2226 89 0 0 chr12 54945989 54946282 -88840173 - AluSg1 SINE Alu -16 293 1 36 23 0 0 chr12 54946287 54946330 -88840125 + AT_rich Low_complexity Low_complexity 1 43 0 2385 65 13 3 chr12 54946330 54946640 -88839815 - AluSp SINE Alu 0 313 1 1919 153 0 3 chr12 54946644 54946939 -88839516 - AluSx SINE Alu -18 294 1 1989 123 7 3 chr12 54946947 54947247 -88839208 - AluSx SINE Alu -11 301 1 865 178 13 0 chr12 54947259 54947411 -88839044 - AluJo/FRAM SINE Alu -25 287 134 2302 61 3 0 chr12 54947412 54947707 -88838748 - AluY SINE Alu -15 296 1 25 0 0 0 chr12 54947710 54947735 -88838720 + AT_rich Low_complexity Low_complexity 1 25 0 2261 98 0 3 chr12 54947993 54948299 -88838156 + AluSq SINE Alu 3 307 -6 225 354 177 8 chr12 54948592 54948722 -88837733 - L2 LINE L2 -5 3267 3116 25 31 0 0 chr12 54948899 54948931 -88837524 + AT_rich Low_complexity Low_complexity 1 32 0 1817 140 7 7 chr12 54948934 54949227 -88837228 + AluSx SINE Alu 1 293 -19 2310 75 9 35 chr12 54949230 54949369 -88837086 + AluY SINE Alu 1 142 -169 2015 129 7 0 chr12 54949369 54949664 -88836791 + AluSg SINE Alu 1 297 -13 2310 75 9 35 chr12 54949664 54949843 -88836612 + AluY SINE Alu 142 311 0 1992 120 0 0 chr12 54950098 54950411 -88836044 + AluSx SINE Alu 4 316 0 2213 105 0 3 chr12 54950418 54950723 -88835732 + AluSg SINE Alu 1 304 -6 2195 103 0 3 chr12 54950818 54951118 -88835337 + AluSc SINE Alu 1 299 -10 2348 81 3 3 chr12 54951205 54951514 -88834941 - AluY SINE Alu -2 309 1 927 46 0 0 chr12 54951516 54951624 -88834831 - AluSp SINE Alu -177 136 29 2168 99 3 0 chr12 54951818 54952111 -88834344 + AluSx SINE Alu 11 304 -8 324 0 0 0 chr12 54952172 54952208 -88834247 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 2233 83 3 16 chr12 54952685 54952999 -88833456 + AluY SINE Alu 1 310 -1 1464 60 0 0 chr12 54952999 54953176 -88833279 + AluY SINE Alu 115 294 -17 2265 88 0 0 chr12 54953189 54953484 -88832971 + AluSx SINE Alu 1 295 -17 200 146 21 21 chr12 54955527 54955575 -88830880 + (CCCCG)n Simple_repeat Simple_repeat 2 49 0 1797 125 7 4 chr12 54956315 54956594 -88829861 - AluSx SINE Alu -5 307 28 551 276 79 23 chr12 54956740 54956988 -88829467 - MIR SINE MIR -5 257 8 993 94 0 0 chr12 54957237 54957364 -88829091 - AluJb SINE Alu -179 133 7 300 299 89 72 chr12 54957405 54957540 -88828915 + L2 LINE L2 3005 3136 -177 2082 129 0 7 chr12 54957540 54957850 -88828605 - AluSg1 SINE Alu -1 308 1 300 299 89 72 chr12 54957850 54958018 -88828437 + L2 LINE L2 3136 3313 0 2075 99 3 36 chr12 54958110 54958295 -88828160 - AluSx SINE Alu -18 294 104 182 62 31 0 chr12 54958295 54958327 -88828128 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2256 50 7 0 chr12 54958327 54958605 -88827850 - AluY SINE Alu -31 280 1 2075 99 3 36 chr12 54958605 54958722 -88827733 - AluSx SINE Alu -206 106 1 2390 90 3 0 chr12 54960628 54960940 -88825515 - AluSq SINE Alu 0 313 1 207 315 0 33 chr12 54961795 54961887 -88824568 + CT-rich Low_complexity Low_complexity 2 90 0 288 0 0 0 chr12 54962245 54962277 -88824178 + (TCC)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr12 54962391 54962414 -88824041 + (TTG)n Simple_repeat Simple_repeat 2 24 0 255 190 0 0 chr12 54963612 54963670 -88822785 + (CA)n Simple_repeat Simple_repeat 2 59 0 222 103 0 88 chr12 54963994 54964062 -88822393 + (CAG)n Simple_repeat Simple_repeat 1 62 0 230 246 49 0 chr12 54964621 54964682 -88821773 + CT-rich Low_complexity Low_complexity 1 64 0 206 330 0 28 chr12 54964886 54964992 -88821463 + G-rich Low_complexity Low_complexity 4 106 0 216 299 0 15 chr12 54965049 54965116 -88821339 + G-rich Low_complexity Low_complexity 4 69 0 396 0 0 0 chr12 54966008 54966052 -88820403 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr12 54967021 54967044 -88819411 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 252 267 17 39 chr12 54967624 54967759 -88818696 + CT-rich Low_complexity Low_complexity 2 199 0 1675 174 0 3 chr12 54967779 54968067 -88818388 - AluJo SINE Alu -3 309 23 2303 79 0 22 chr12 54969061 54969376 -88817079 - AluSg1 SINE Alu 0 309 2 359 308 171 29 chr12 54969451 54969825 -88816630 - L2 LINE L2 -529 2785 2359 1681 81 5 0 chr12 54970343 54970564 -88815891 + AluSq SINE Alu 82 303 -10 267 358 75 12 chr12 54970653 54970826 -88815629 + MIR SINE MIR 8 191 -71 1542 149 0 0 chr12 54970829 54971057 -88815398 + AluSq SINE Alu 14 241 -72 1180 111 0 12 chr12 54971307 54971479 -88814976 - AluSq SINE Alu -6 307 138 955 201 7 77 chr12 54971587 54971860 -88814595 + AluSx SINE Alu 1 254 -58 1973 136 0 13 chr12 54972063 54972379 -88814076 + AluSx SINE Alu 1 312 0 758 167 0 56 chr12 54972437 54972581 -88813874 + FLAM_C SINE Alu 2 137 -6 2296 105 0 0 chr12 54972583 54972896 -88813559 + AluSq SINE Alu 1 313 0 2062 78 0 28 chr12 54972983 54973267 -88813188 - AluSc SINE Alu -20 289 14 32 0 0 0 chr12 54973287 54973319 -88813136 + AT_rich Low_complexity Low_complexity 1 32 0 892 59 101 0 chr12 54973319 54973438 -88813017 - AluY SINE Alu -180 131 1 1187 102 0 0 chr12 54973438 54973605 -88812850 - AluY SINE Alu -13 298 132 1568 117 5 0 chr12 54973629 54973852 -88812603 + AluSp SINE Alu 1 224 -89 626 148 28 9 chr12 54973855 54973963 -88812492 + AluSq/x SINE Alu 2 111 -201 2079 93 24 3 chr12 54974119 54974410 -88812045 - AluSx SINE Alu -15 297 1 1963 119 3 14 chr12 54974430 54974715 -88811740 - AluSx SINE Alu -30 282 1 692 260 109 0 chr12 54974877 54975069 -88811386 + MIR SINE MIR 47 259 -3 1088 150 32 0 chr12 54975801 54975988 -88810467 + MER75 DNA T2_type 1 193 -321 1237 136 5 0 chr12 54976008 54976192 -88810263 - AluJo SINE Alu -127 185 1 2170 96 7 0 chr12 54976236 54976529 -88809926 + AluSp SINE Alu 1 295 -18 537 127 25 0 chr12 54976690 54976769 -88809686 - AluJ/FLAM SINE Alu -230 82 2 1857 150 17 0 chr12 54976858 54977152 -88809303 - AluSq SINE Alu -14 299 1 2201 102 0 0 chr12 54977306 54977601 -88808854 - AluSx SINE Alu -13 299 5 230 245 0 53 chr12 54977612 54977706 -88808749 + MER117 DNA MER1_type 78 166 -31 598 227 28 0 chr12 54978313 54978454 -88808001 + MER103 DNA DNA 3 147 -19 2174 89 0 26 chr12 54978905 54979208 -88807247 - AluSx SINE Alu -17 295 1 1680 102 113 4 chr12 54979555 54979820 -88806635 - AluSx SINE Alu -16 296 3 2182 79 3 16 chr12 54980995 54981299 -88805156 - AluY SINE Alu -11 300 1 770 117 9 0 chr12 54981693 54981840 -88804615 - FLAM_C SINE Alu 0 153 6 1939 142 0 31 chr12 54982077 54982369 -88804086 + AluSq SINE Alu 1 284 -29 413 21 0 0 chr12 54982369 54982416 -88804039 + (CA)n Simple_repeat Simple_repeat 2 48 0 1939 142 0 31 chr12 54982416 54982446 -88804009 + AluSq SINE Alu 284 313 0 192 310 17 0 chr12 54982469 54982527 -88803928 + MIR SINE MIR 93 151 -57 588 192 0 0 chr12 54982528 54982627 -88803828 + FLAM_A SINE Alu 1 99 -43 454 125 153 0 chr12 54982631 54982703 -88803752 - AluSg/x SINE Alu -16 293 211 2139 75 17 7 chr12 54982843 54983138 -88803317 + AluSq SINE Alu 1 298 -15 1006 147 12 6 chr12 54983138 54983301 -88803154 + AluJb SINE Alu 134 297 -15 1574 159 56 84 chr12 54983301 54983660 -88802795 - LTR47A LTR ERVL -101 351 3 817 151 93 7 chr12 54983697 54983836 -88802619 + AluY SINE Alu 4 154 -157 319 283 75 19 chr12 54983908 54984014 -88802441 + L1M4 LINE L1 5197 5308 -838 2085 99 10 3 chr12 54984021 54984313 -88802142 + AluSp SINE Alu 1 294 -19 229 125 0 25 chr12 54984327 54984367 -88802088 + Alu SINE Alu 105 143 -159 1553 191 11 4 chr12 54984370 54984648 -88801807 + AluJb SINE Alu 8 287 -25 1698 171 10 0 chr12 54984658 54984956 -88801499 + AluJo SINE Alu 1 301 -11 871 233 23 6 chr12 54984981 54985157 -88801298 - AluSg/x SINE Alu 0 310 132 28 29 0 0 chr12 54985157 54985192 -88801263 + AT_rich Low_complexity Low_complexity 1 35 0 776 175 8 0 chr12 54985193 54985319 -88801136 + AluJo/FLAM SINE Alu 2 128 -184 430 102 0 0 chr12 54985321 54985380 -88801075 + AluJ/FRAM SINE Alu 232 290 -22 2272 90 0 0 chr12 54985387 54985675 -88800780 + AluSc SINE Alu 17 304 -5 2028 114 3 0 chr12 54985681 54985971 -88800484 + AluSg SINE Alu 5 295 -15 2196 83 0 13 chr12 54985973 54986273 -88800182 + AluSc SINE Alu 1 296 -13 777 219 0 0 chr12 54986301 54986438 -88800017 + FRAM SINE Alu 1 137 -39 245 197 14 0 chr12 54986439 54986510 -88799945 + GA-rich Low_complexity Low_complexity 1 72 0 211 109 0 73 chr12 54986499 54986554 -88799901 + (GAAAA)n Simple_repeat Simple_repeat 3 53 0 * 239 275 187 0 chr12 54986556 54986647 -88799808 + FLAM_A SINE Alu 1 108 -25 877 174 7 0 chr12 54986647 54986791 -88799664 - AluSg/x SINE Alu -10 302 158 1913 138 3 7 chr12 54986960 54987265 -88799190 + AluSx SINE Alu 6 309 -3 180 250 226 0 chr12 54987375 54987459 -88798996 - L2 LINE L2 -3 3310 3208 2164 85 3 10 chr12 54987607 54987900 -88798555 + AluSc SINE Alu 1 291 -18 2259 88 0 0 chr12 54987901 54988195 -88798260 + AluY SINE Alu 1 294 -17 524 172 224 0 chr12 54988206 54988322 -88798133 + AluJo SINE Alu 1 142 -170 1964 138 0 3 chr12 54988323 54988620 -88797835 + AluSx SINE Alu 1 296 -16 2118 97 17 10 chr12 54988622 54988920 -88797535 + AluSx SINE Alu 2 301 -11 280 252 99 0 chr12 54989298 54989409 -88797046 + MIR SINE MIR 97 218 -44 2036 110 4 0 chr12 54989604 54989918 -88796537 - AluSx SINE Alu 0 315 1 2166 119 3 0 chr12 54990224 54990527 -88795928 - AluSp SINE Alu -9 304 1 1875 143 0 3 chr12 54990533 54990827 -88795628 - AluJb SINE Alu -18 294 2 297 274 87 8 chr12 54990877 54991020 -88795435 + MIR SINE MIR 48 198 -64 230 233 7 82 chr12 54992683 54992829 -88793626 + G-rich Low_complexity Low_complexity 3 137 0 26 82 0 0 chr12 54992849 54992910 -88793545 + GC_rich Low_complexity Low_complexity 1 61 0 2250 80 6 10 chr12 54993299 54993611 -88792844 - AluSp SINE Alu -2 311 1 538 159 66 53 chr12 54996247 54996321 -88790134 - MER58C DNA MER1_type -2209 211 139 2476 50 0 0 chr12 54996321 54996621 -88789834 - AluY SINE Alu -11 300 1 2268 109 0 3 chr12 54996625 54996938 -88789517 - AluSx SINE Alu 0 312 1 538 159 66 53 chr12 54996938 54997009 -88789446 - MER58C DNA MER1_type -2283 137 59 1725 168 20 0 chr12 54997057 54997354 -88789101 + AluSx SINE Alu 1 303 -9 2086 107 3 0 chr12 54997364 54997654 -88788801 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr12 54997662 54997682 -88788773 + (GAAA)n Simple_repeat Simple_repeat 3 22 0 602 117 29 19 chr12 54997682 54997778 -88788677 - MER3 DNA MER1_type -20 142 43 2114 53 0 4 chr12 54998106 54998368 -88788087 + AluY SINE Alu 47 307 -4 204 179 0 0 chr12 54998419 54998458 -88787997 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2364 78 0 3 chr12 54999700 55000006 -88786449 - AluY SINE Alu -6 305 1 2212 89 10 0 chr12 55000006 55000298 -88786157 - AluSx SINE Alu -17 295 1 320 256 202 39 chr12 55001418 55001621 -88784834 + MIR SINE MIR 27 262 0 2036 114 21 0 chr12 55003654 55003944 -88782511 + AluSx SINE Alu 1 296 -16 2096 89 7 4 chr12 55003956 55004237 -88782218 + AluSc SINE Alu 13 294 -15 2319 94 0 0 chr12 55006596 55006903 -88779552 - AluSg SINE Alu -3 307 1 1776 122 50 0 chr12 55007133 55007412 -88779043 - AluJo SINE Alu -19 293 1 2145 97 0 19 chr12 55009037 55009345 -88777110 - AluSg SINE Alu -8 302 1 2071 132 0 0 chr12 55009779 55010083 -88776372 + AluSx SINE Alu 1 304 -8 302 257 103 86 chr12 55011081 55011256 -88775199 + MER5B DNA MER1_type 1 178 0 2158 94 3 7 chr12 55011487 55011785 -88774670 + AluSx SINE Alu 2 298 -14 2249 86 3 3 chr12 55013540 55013841 -88772614 - AluSg SINE Alu 0 310 10 1917 116 47 0 chr12 55014332 55014609 -88771846 - AluSx SINE Alu -22 290 1 1946 134 23 0 chr12 55014612 55014911 -88771544 - AluSq SINE Alu -7 306 1 205 335 161 48 chr12 55015297 55015613 -88770842 + L2 LINE L2 2921 3272 0 229 256 51 68 chr12 55015949 55016066 -88770389 + MIR SINE MIR 102 216 -46 2437 66 0 0 chr12 55016472 55016775 -88769680 - AluY SINE Alu -8 303 1 2196 100 3 0 chr12 55016907 55017206 -88769249 - AluSx SINE Alu -1 311 12 1313 148 49 33 chr12 55017241 55017485 -88768970 - AluJo SINE Alu -21 291 44 2280 71 0 7 chr12 55017494 55017802 -88768653 - AluYa5 SINE Alu -5 306 1 326 324 72 0 chr12 55018310 55018421 -88768034 + MIR SINE MIR 16 134 -74 1377 167 63 0 chr12 55019038 55019277 -88767178 - AluJb SINE Alu -58 254 1 198 256 200 22 chr12 55019964 55020054 -88766401 - MIR SINE MIR -153 109 4 2504 47 0 7 chr12 55022912 55023213 -88763242 + AluSc SINE Alu 1 299 -10 373 287 23 0 chr12 55023472 55023601 -88762854 - L1ME LINE L1 -297 5824 5693 1296 160 60 24 chr12 55023628 55023878 -88762577 - AluJo SINE Alu -53 259 1 1148 150 0 39 chr12 55023878 55024085 -88762370 - AluSp SINE Alu -3 310 112 917 174 68 0 chr12 55024104 55024265 -88762190 + FAM SINE Alu 2 173 -2 2049 84 7 30 chr12 55024267 55024564 -88761891 + AluSx SINE Alu 1 290 -22 242 231 0 39 chr12 55024575 55024653 -88761802 - L1M4 LINE L1 -2450 3696 3622 945 71 6 137 chr12 55024681 55024864 -88761591 + AluSq SINE Alu 137 295 -18 2051 101 31 3 chr12 55024932 55025219 -88761236 + AluSg SINE Alu 5 299 -11 1680 102 113 4 chr12 55026394 55026659 -88759796 + AluSx SINE Alu 3 296 -16 2217 71 0 0 chr12 55027006 55027310 -88759145 + AluSg SINE Alu 1 304 0 455 292 58 46 chr12 55028297 55028537 -88757918 + L2 LINE L2 2386 2628 -686 2124 64 50 3 chr12 55028538 55028820 -88757635 - AluSc SINE Alu -7 302 8 2434 60 0 0 chr12 55029243 55029543 -88756912 - AluSc SINE Alu -9 300 1 2086 115 3 3 chr12 55030135 55030431 -88756024 + AluSx SINE Alu 1 296 -16 454 106 274 97 chr12 55030431 55030536 -88755919 - FLAM_C SINE Alu -173 129 1 2423 69 0 0 chr12 55031009 55031312 -88755143 + AluSx SINE Alu 1 303 -9 948 56 0 83 chr12 55031906 55031993 -88754462 + AluSc SINE Alu 1 73 -236 2594 39 0 0 chr12 55031993 55032300 -88754155 + AluY SINE Alu 1 307 -4 948 56 0 83 chr12 55032300 55032356 -88754099 + AluSc SINE Alu 73 132 -177 703 215 97 57 chr12 55032374 55032505 -88753950 + MIR SINE MIR 21 166 -96 2233 104 0 0 chr12 55032505 55032812 -88753643 + AluSc SINE Alu 1 307 -2 703 215 97 57 chr12 55032812 55032908 -88753547 + MIR SINE MIR 166 257 -5 2319 69 0 0 chr12 55032985 55033275 -88753180 + AluSq SINE Alu 13 302 -11 189 147 0 0 chr12 55035897 55035931 -88750524 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 158 14 0 chr12 55036012 55036297 -88750158 + AluJb SINE Alu 1 289 -23 1750 151 7 7 chr12 55036305 55036597 -88749858 + AluJb SINE Alu 1 292 -20 31 65 0 13 chr12 55036715 55036770 -88749685 + AT_rich Low_complexity Low_complexity 1 56 -20 2085 109 0 20 chr12 55036770 55037073 -88749382 - AluSx SINE Alu -15 297 1 31 65 0 13 chr12 55037073 55037094 -88749361 + AT_rich Low_complexity Low_complexity 56 76 0 366 276 124 42 chr12 55037131 55037348 -88749107 - L2 LINE L2 0 3313 3079 261 0 0 0 chr12 55037484 55037513 -88748942 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1928 112 14 4 chr12 55037515 55037793 -88748662 - AluSx SINE Alu -31 281 1 197 308 196 0 chr12 55037796 55037903 -88748552 - MIR SINE MIR -48 214 87 204 302 35 12 chr12 55038289 55038375 -88748080 + L2 LINE L2 3220 3307 -6 468 327 97 13 chr12 55038560 55038786 -88747669 + MIR SINE MIR 2 246 -16 2333 81 0 0 chr12 55039201 55039510 -88746945 + AluY SINE Alu 1 309 -2 1516 167 26 32 chr12 55041834 55042007 -88744448 - AluJo SINE Alu -1 311 139 2381 58 0 0 chr12 55042007 55042298 -88744157 - AluY SINE Alu -16 295 5 1516 167 26 32 chr12 55042298 55042436 -88744019 - AluJo SINE Alu -173 139 2 1956 74 0 26 chr12 55042444 55042732 -88743723 - AluY SINE Alu 0 311 36 1708 159 45 3 chr12 55042742 55043032 -88743423 - AluJo SINE Alu -10 302 1 2188 106 0 6 chr12 55043338 55043649 -88742806 - AluSg SINE Alu -1 309 1 2421 74 0 6 chr12 55043649 55043961 -88742494 - AluY SINE Alu -1 310 1 1917 125 32 0 chr12 55044146 55044427 -88742028 - AluSx SINE Alu -22 290 1 254 286 205 9 chr12 55044483 55044595 -88741860 - MIR SINE MIR -79 183 50 1967 103 51 0 chr12 55044607 55044899 -88741556 + AluSx SINE Alu 1 307 -5 1976 109 44 0 chr12 55044900 55045194 -88741261 + AluSg SINE Alu 3 309 -1 474 87 14 14 chr12 55045265 55045334 -88741121 + AluS SINE Alu 2 70 -243 440 287 84 18 chr12 55045460 55045627 -88740828 - L1M4 LINE L1 -2752 3394 3217 386 236 79 0 chr12 55045619 55045708 -88740747 + L1MC4 LINE L1 6608 6703 -1339 * 2203 99 0 0 chr12 55045735 55046028 -88740427 - AluY SINE Alu -18 293 1 2042 129 0 26 chr12 55046028 55046338 -88740117 - AluSx SINE Alu -10 302 1 1010 89 7 0 chr12 55046338 55046473 -88739982 - AluSq/x SINE Alu -176 136 1 2178 112 3 0 chr12 55046484 55046780 -88739675 - AluSx SINE Alu -15 297 1 337 274 51 68 chr12 55046789 55046906 -88739549 - L1M4 LINE L1 -2933 3213 3099 304 238 189 0 chr12 55048752 55048874 -88737581 - MIR SINE MIR -7 255 111 240 324 51 84 chr12 55048854 55049041 -88737414 - L2 LINE L2 -483 2831 2639 * 2170 114 0 19 chr12 55049041 55049356 -88737099 + AluSc SINE Alu 1 309 0 1959 128 23 3 chr12 55049358 55049662 -88736793 + AluSg SINE Alu 1 310 0 240 324 51 84 chr12 55049662 55049679 -88736776 - L2 LINE L2 -676 2638 2622 1569 168 26 32 chr12 55049679 55049989 -88736466 + AluJb SINE Alu 3 310 -2 240 324 51 84 chr12 55049989 55050014 -88736441 - L2 LINE L2 -692 2622 2598 2127 99 3 30 chr12 55050014 55050147 -88736308 + AluSg SINE Alu 1 136 -174 2480 61 0 6 chr12 55050147 55050459 -88735996 + AluY SINE Alu 1 310 -1 2127 99 3 30 chr12 55050459 55050629 -88735826 + AluSg SINE Alu 136 296 -14 240 324 51 84 chr12 55050629 55050765 -88735690 - L2 LINE L2 -716 2598 2473 298 303 55 9 chr12 55050787 55050896 -88735559 - MIR SINE MIR -2 260 147 1147 170 16 0 chr12 55050901 55051095 -88735360 - AluJb SINE Alu -13 299 103 429 20 0 0 chr12 55051095 55051145 -88735310 + (TG)n Simple_repeat Simple_repeat 2 51 0 1318 143 186 13 chr12 55051145 55051382 -88735073 - AluSc SINE Alu -19 280 3 281 311 91 0 chr12 55051382 55051514 -88734941 - MIR SINE MIR -106 156 13 200 402 21 26 chr12 55051560 55051754 -88734701 - L2 LINE L2 -926 2388 2196 659 244 57 76 chr12 55051813 55052060 -88734395 + L1M4 LINE L1 5438 5683 -491 1468 169 30 34 chr12 55052073 55052368 -88734087 - AluJb SINE Alu -17 295 2 1869 107 25 4 chr12 55052423 55052703 -88733752 + AluSc SINE Alu 23 308 -1 2289 86 10 0 chr12 55052710 55053012 -88733443 + AluSp SINE Alu 1 305 -8 289 313 75 30 chr12 55053720 55053854 -88732601 + MIR SINE MIR 117 256 -6 2078 92 10 7 chr12 55054920 55055212 -88731243 + AluSq SINE Alu 2 294 -19 1880 139 10 0 chr12 55055213 55055515 -88730940 - AluSx SINE Alu -7 305 1 257 257 124 29 chr12 55055520 55055625 -88730830 - MIR SINE MIR -42 220 106 1383 165 79 14 chr12 55055674 55055952 -88730503 + AluJo SINE Alu 1 300 -12 2263 79 3 16 chr12 55055952 55056269 -88730186 + AluSp SINE Alu 1 313 0 1383 165 79 14 chr12 55056269 55056281 -88730174 + AluJo SINE Alu 300 310 -2 207 200 44 0 chr12 55056281 55056326 -88730129 + GA-rich Low_complexity Low_complexity 2 48 0 182 311 176 0 chr12 55056819 55056893 -88729562 - MER5A DNA MER1_type -99 90 4 1520 123 113 17 chr12 55056905 55057198 -88729257 - MER1B DNA MER1_type -1 338 18 2064 109 3 3 chr12 55058999 55059302 -88727153 - AluSx SINE Alu -9 303 1 26 0 0 0 chr12 55059458 55059484 -88726971 + AT_rich Low_complexity Low_complexity 1 26 0 280 175 18 18 chr12 55059758 55059815 -88726640 + L2 LINE L2 3249 3305 -8 2226 102 0 7 chr12 55062601 55062904 -88723551 - AluSq SINE Alu -12 301 1 1816 135 6 50 chr12 55062904 55063223 -88723232 - AluSx SINE Alu -7 305 1 805 127 0 60 chr12 55063232 55063382 -88723073 - FRAM SINE Alu -24 152 12 2130 107 0 7 chr12 55064060 55064359 -88722096 + AluSg1 SINE Alu 1 297 -12 1961 124 10 3 chr12 55064515 55064805 -88721650 + AluSg SINE Alu 1 292 -18 200 364 0 0 chr12 55065423 55065489 -88720966 + CT-rich Low_complexity Low_complexity 1 66 0 28 29 0 0 chr12 55066410 55066445 -88720010 + AT_rich Low_complexity Low_complexity 1 35 0 1956 114 36 19 chr12 55066453 55066761 -88719694 - AluSq SINE Alu 0 313 1 558 152 66 53 chr12 55068832 55068906 -88717549 - MER58C DNA MER1_type -2209 211 139 2524 43 0 0 chr12 55068906 55069206 -88717249 - AluY SINE Alu -11 300 1 2268 109 0 3 chr12 55069210 55069523 -88716932 - AluSx SINE Alu 0 312 1 558 152 66 53 chr12 55069523 55069594 -88716861 - MER58C DNA MER1_type -2283 137 59 1725 168 20 0 chr12 55069642 55069939 -88716516 + AluSx SINE Alu 1 303 -9 2124 114 3 0 chr12 55069949 55070247 -88716208 + AluSx SINE Alu 1 299 -13 2117 91 7 3 chr12 55070250 55070548 -88715907 + AluY SINE Alu 1 299 -12 280 175 18 18 chr12 55073334 55073391 -88713064 - L2 LINE L2 -8 3305 3249 26 0 0 0 chr12 55073665 55073691 -88712764 + AT_rich Low_complexity Low_complexity 1 26 0 2064 109 3 3 chr12 55073847 55074150 -88712305 + AluSx SINE Alu 1 303 -9 1520 123 113 17 chr12 55075951 55076244 -88710211 + MER1B DNA MER1_type 18 338 -1 182 311 176 0 chr12 55076256 55076330 -88710125 + MER5A DNA MER1_type 4 90 -99 2364 72 0 3 chr12 55076531 55076836 -88709619 - AluY SINE Alu -7 304 1 1675 161 18 7 chr12 55076849 55077134 -88709321 - AluJo SINE Alu -23 289 2 1816 168 10 3 chr12 55077208 55077518 -88708937 + AluJo SINE Alu 1 312 0 754 152 30 15 chr12 55077539 55077671 -88708784 + AluJo SINE Alu 6 139 -173 1552 158 28 14 chr12 55077674 55077958 -88708497 + AluJo SINE Alu 1 288 -24 1177 171 40 0 chr12 55077998 55078035 -88708420 + AluJo SINE Alu 85 119 -193 449 17 17 0 chr12 55078035 55078093 -88708362 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1177 171 40 0 chr12 55078093 55078254 -88708201 + AluJo SINE Alu 119 291 -21 2134 126 3 0 chr12 55078255 55078556 -88707899 + AluSx SINE Alu 1 302 -10 2436 75 0 0 chr12 55078556 55078863 -88707592 + AluY SINE Alu 1 307 -4 1417 156 0 4 chr12 55078864 55079089 -88707366 + AluJb SINE Alu 85 308 -4 2283 100 6 3 chr12 55079089 55079400 -88707055 + AluSx SINE Alu 1 312 0 501 214 0 31 chr12 55079608 55079689 -88706766 - AluJo SINE Alu -98 214 135 2115 116 3 0 chr12 55079689 55079990 -88706465 - AluSp SINE Alu -11 302 1 501 214 0 31 chr12 55079990 55080006 -88706449 - AluJo SINE Alu -177 135 120 504 262 36 36 chr12 55080069 55080306 -88706149 - L1MC5 LINE L1 -547 7495 7262 982 73 0 0 chr12 55080324 55080448 -88706007 + AluSp/q SINE Alu 169 292 -21 1140 187 102 4 chr12 55080464 55080699 -88705756 - AluJo SINE Alu -54 258 1 276 30 0 0 chr12 55080725 55080758 -88705697 + (TA)n Simple_repeat Simple_repeat 1 33 0 383 190 73 101 chr12 55080765 55081095 -88705360 - L1MC4 LINE L1 -742 7219 6961 260 176 59 0 chr12 55081520 55081730 -88704725 + (CCCG)n Simple_repeat Simple_repeat 1 222 0 24 0 0 0 chr12 55084655 55084679 -88701776 + AT_rich Low_complexity Low_complexity 1 24 0 2040 91 31 7 chr12 55085566 55085853 -88700602 + AluSg SINE Alu 1 294 -16 1509 176 27 24 chr12 55086437 55086733 -88699722 - AluJo SINE Alu -15 297 1 1423 194 66 0 chr12 55086738 55087027 -88699428 - AluJo SINE Alu -4 308 1 26 0 0 0 chr12 55087027 55087053 -88699402 + AT_rich Low_complexity Low_complexity 1 26 0 2080 106 3 0 chr12 55087306 55087609 -88698846 - AluSq SINE Alu -9 304 1 2062 121 3 6 chr12 55087675 55087988 -88698467 - AluSx SINE Alu 0 312 1 397 117 33 0 chr12 55088025 55088085 -88698370 - AluS SINE Alu -6 294 233 248 79 26 0 chr12 55088196 55088234 -88698221 - MER58 DNA MER1_type -118 97 59 1659 171 20 0 chr12 55088282 55088580 -88697875 + AluSx SINE Alu 1 304 -8 2231 100 0 10 chr12 55088590 55088901 -88697554 + AluSq SINE Alu 1 308 -5 1964 105 54 0 chr12 55088907 55089202 -88697253 + AluSp SINE Alu 3 313 0 707 140 0 9 chr12 55089203 55089310 -88697145 - AluJo/FLAM SINE Alu -195 117 12 1975 105 6 19 chr12 55089366 55089679 -88696776 + AluSg SINE Alu 1 309 -1 2036 109 0 20 chr12 55089695 55089832 -88696623 + AluSq SINE Alu 2 140 -173 2736 3 0 3 chr12 55089832 55090141 -88696314 + AluYa5 SINE Alu 1 308 -3 2036 109 0 20 chr12 55090141 55090305 -88696150 + AluSq SINE Alu 140 297 -16 1474 163 37 27 chr12 55090539 55090834 -88695621 + L1PA16 LINE L1 5808 6105 -61 1938 80 87 0 chr12 55090863 55091139 -88695316 + AluSc SINE Alu 1 300 -9 2094 95 3 3 chr12 55091791 55092085 -88694370 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 55092200 55092224 -88694231 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr12 55092773 55092796 -88693659 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 706 41 224 0 chr12 55092879 55092977 -88693478 + AluSc SINE Alu 17 136 -173 2013 103 45 0 chr12 55092977 55093269 -88693186 + AluSq SINE Alu 1 305 -8 1855 148 7 0 chr12 55093497 55093788 -88692667 - AluJb SINE Alu -19 293 1 2182 84 0 3 chr12 55094488 55094772 -88691683 - AluY SINE Alu -18 293 11 431 198 66 0 chr12 55094891 55094982 -88691473 + MIR3 SINE MIR 111 207 -1 2058 100 7 10 chr12 55095235 55095545 -88690910 + AluSg SINE Alu 1 309 -1 1989 113 13 16 chr12 55095697 55096006 -88690449 + AluSx SINE Alu 1 308 -4 2310 84 0 0 chr12 55096557 55096853 -88689602 - AluSg SINE Alu -14 296 1 2368 65 0 7 chr12 55096863 55097172 -88689283 - AluSc SINE Alu -2 307 1 1313 180 74 18 chr12 55097175 55097458 -88688997 - AluJo SINE Alu -13 299 1 26 0 0 0 chr12 55097458 55097484 -88688971 + AT_rich Low_complexity Low_complexity 1 26 0 2080 106 3 0 chr12 55097737 55098040 -88688415 - AluSq SINE Alu -9 304 1 2064 119 3 7 chr12 55098104 55098414 -88688041 - AluSx SINE Alu -3 309 1 1940 129 10 3 chr12 55098451 55098746 -88687709 - AluSx SINE Alu -14 298 2 1401 155 23 36 chr12 55099549 55099852 -88686603 - AluJb SINE Alu -1 311 13 1370 153 37 47 chr12 55099953 55100253 -88686202 - AluJo SINE Alu -15 297 1 281 284 42 32 chr12 55100388 55100483 -88685972 + L2 LINE L2 3212 3307 -6 1480 179 11 4 chr12 55101542 55101816 -88684639 - AluJb SINE Alu -36 276 1 213 71 95 0 chr12 55102713 55102755 -88683700 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2211 88 0 10 chr12 55103269 55103565 -88682890 + AluSg SINE Alu 1 293 -17 225 0 0 0 chr12 55103575 55103600 -88682855 + (TG)n Simple_repeat Simple_repeat 2 26 0 332 238 13 0 chr12 55103600 55103684 -88682771 + L1MC4 LINE L1 1995 6984 -1338 816 76 110 0 chr12 55103687 55103805 -88682650 + AluSg SINE Alu 1 131 -179 2257 58 7 10 chr12 55103810 55104101 -88682354 + AluSp SINE Alu 1 290 -23 329 153 0 8 chr12 55104118 55104183 -88682272 - FLAM SINE Alu -14 119 72 24 0 0 0 chr12 55104212 55104236 -88682219 + AT_rich Low_complexity Low_complexity 1 24 0 724 164 0 0 chr12 55104236 55104352 -88682103 - FLAM_C SINE Alu -26 117 2 2411 77 0 3 chr12 55104518 55104830 -88681625 - AluY SINE Alu 0 311 1 2062 126 7 0 chr12 55104831 55105133 -88681322 - AluSq SINE Alu -9 304 1 2101 138 163 37 chr12 55106043 55106105 -88680350 - Charlie1 DNA MER1_type 0 2761 2708 1717 173 0 20 chr12 55106105 55106411 -88680044 + AluJo SINE Alu 1 300 -12 2101 138 163 37 chr12 55106411 55106857 -88679598 - Charlie1 DNA MER1_type -53 2708 2189 2037 120 0 0 chr12 55106915 55107206 -88679249 - AluSx SINE Alu -17 295 5 1401 155 23 36 chr12 55108012 55108315 -88678140 - AluJb SINE Alu -1 311 13 1370 153 37 47 chr12 55108416 55108716 -88677739 - AluJo SINE Alu -15 297 1 281 284 42 32 chr12 55108851 55108946 -88677509 + L2 LINE L2 3212 3307 -6 1480 179 11 4 chr12 55110005 55110279 -88676176 - AluJb SINE Alu -36 276 1 203 122 0 61 chr12 55111258 55111307 -88675148 + (TCCCC)n Simple_repeat Simple_repeat 2 47 0 182 306 20 0 chr12 55111508 55111557 -88674898 - L3 LINE CR1 -652 925 876 1805 152 74 9 chr12 55111640 55111963 -88674492 - MER2 DNA MER2_type 0 345 2 253 272 22 22 chr12 55112509 55112601 -88673854 + CT-rich Low_complexity Low_complexity 1 92 0 27 0 0 0 chr12 55113313 55113340 -88673115 + AT_rich Low_complexity Low_complexity 1 27 0 205 293 0 17 chr12 55113466 55113524 -88672931 + C-rich Low_complexity Low_complexity 1 57 0 238 50 50 0 chr12 55115953 55115993 -88670462 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr12 55117187 55117207 -88669248 + (T)n Simple_repeat Simple_repeat 1 20 0 1884 108 4 0 chr12 55117212 55117472 -88668983 - AluSp SINE Alu -52 261 1 189 107 0 0 chr12 55117524 55117552 -88668903 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1942 117 23 3 chr12 55117877 55118176 -88668279 + AluSg SINE Alu 1 305 -5 1087 182 134 24 chr12 55118188 55118441 -88668014 - AluJb SINE Alu -20 292 12 427 190 0 107 chr12 55118928 55119049 -88667406 + BC200 scRNA scRNA 5 112 -88 1693 111 52 8 chr12 55119074 55119326 -88667129 + AluSc SINE Alu 1 263 -46 523 124 155 0 chr12 55120756 55120853 -88665602 - AluSq/x SINE Alu -179 133 22 2258 91 0 3 chr12 55120855 55121162 -88665293 - AluSc SINE Alu -3 306 1 23 33 0 0 chr12 55123329 55123359 -88663096 + AT_rich Low_complexity Low_complexity 1 30 0 341 241 100 100 chr12 55124041 55124211 -88662244 - MIR3 SINE MIR -21 187 18 2438 65 0 3 chr12 55125164 55125474 -88660981 + AluY SINE Alu 2 310 -1 1898 127 38 0 chr12 55126007 55126298 -88660157 + AluSq SINE Alu 1 302 -11 1680 155 0 7 chr12 55126301 55126591 -88659864 + AluSx SINE Alu 1 288 -24 260 70 23 0 chr12 55128889 55128932 -88657523 + (TA)n Simple_repeat Simple_repeat 2 45 0 2085 115 7 0 chr12 55129140 55129428 -88657027 - AluSg SINE Alu -20 290 1 303 277 69 38 chr12 55132573 55132732 -88653723 - MIR SINE MIR -58 204 41 2355 83 0 10 chr12 55133335 55133636 -88652819 - AluSc SINE Alu -11 298 1 2301 111 3 0 chr12 55136161 55136467 -88649988 + AluSp SINE Alu 1 307 -6 1452 163 53 53 chr12 55136496 55136579 -88649876 + AluJb SINE Alu 6 88 -224 2314 92 7 7 chr12 55136579 55136883 -88649572 + AluSx SINE Alu 1 304 -8 1452 163 53 53 chr12 55136883 55136935 -88649520 + AluJb SINE Alu 88 139 -173 185 0 40 0 chr12 55136935 55136960 -88649495 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1452 163 53 53 chr12 55136960 55137124 -88649331 + AluJb SINE Alu 138 306 -6 191 196 0 98 chr12 55137128 55137179 -88649276 + MIR SINE MIR 56 101 -161 2169 114 0 3 chr12 55137802 55138100 -88648355 + AluSx SINE Alu 1 297 -15 1737 167 3 23 chr12 55138107 55138245 -88648210 + AluJb SINE Alu 1 140 -172 2368 67 7 10 chr12 55138245 55138543 -88647912 + AluY SINE Alu 1 297 -14 1737 167 3 23 chr12 55138543 55138703 -88647752 + AluJb SINE Alu 140 293 -19 2177 119 6 3 chr12 55138788 55139099 -88647356 + AluSx SINE Alu 1 312 0 235 291 35 0 chr12 55139478 55139564 -88646891 - MIR SINE MIR -65 197 109 22 0 0 0 chr12 55140040 55140062 -88646393 + GC_rich Low_complexity Low_complexity 1 22 0 1096 120 0 25 chr12 55141884 55142042 -88644413 - AluJb SINE Alu -25 287 134 2466 74 0 3 chr12 55142052 55142363 -88644092 + AluY SINE Alu 1 310 -1 525 78 0 19 chr12 55142363 55142564 -88643891 + AluY SINE Alu 1 308 -3 703 192 0 0 chr12 55142564 55142684 -88643771 - AluJo/FLAM SINE Alu -191 121 2 302 260 68 14 chr12 55143604 55143750 -88642705 + L1ME4a LINE L1 5968 6121 0 215 291 123 49 chr12 55143838 55143990 -88642465 + MIR SINE MIR 3 165 -62 556 279 77 36 chr12 55144004 55144251 -88642204 + MIR SINE MIR 2 258 -4 2250 98 6 35 chr12 55146486 55146801 -88639654 - AluSp SINE Alu -3 310 5 2347 114 0 0 chr12 55146805 55147111 -88639344 - AluSq SINE Alu -7 306 1 298 144 56 56 chr12 55147211 55147301 -88639154 + Charlie4 DNA MER1_type 1802 1891 -70 563 189 9 0 chr12 55147303 55147409 -88639046 + FLAM_C SINE Alu 2 108 -35 818 160 28 7 chr12 55147630 55147774 -88638681 + AluSg/x SINE Alu 135 281 -29 392 274 11 0 chr12 55147793 55147912 -88638543 - L1ME LINE L1 -445 5717 5592 2147 123 3 10 chr12 55148962 55149264 -88637191 + AluSx SINE Alu 1 300 -12 1613 188 62 0 chr12 55149331 55149607 -88636848 - AluJb SINE Alu -19 293 1 2043 134 0 3 chr12 55149647 55149938 -88636517 + AluSx SINE Alu 1 290 -22 2064 144 3 3 chr12 55151067 55151379 -88635076 + AluSx SINE Alu 1 312 0 2085 110 17 0 chr12 55151511 55151812 -88634643 + AluSx SINE Alu 5 310 -2 1898 153 7 0 chr12 55151829 55152123 -88634332 + AluJb SINE Alu 1 296 -16 1896 145 17 10 chr12 55152161 55152450 -88634005 + AluJb SINE Alu 1 291 -21 1973 121 22 48 chr12 55152454 55152592 -88633863 + AluSx SINE Alu 1 141 -171 2864 7 0 0 chr12 55152592 55152895 -88633560 + AluYa5 SINE Alu 1 303 -8 1973 121 22 48 chr12 55152895 55153071 -88633384 + AluSx SINE Alu 141 307 -5 715 298 167 38 chr12 55153205 55153799 -88632656 + L3 LINE CR1 183 858 -719 2297 97 3 23 chr12 55153799 55154109 -88632346 + AluSx SINE Alu 1 304 -8 231 368 0 9 chr12 55154119 55154225 -88632230 + L3 LINE CR1 970 1074 -503 2091 122 0 3 chr12 55154317 55154625 -88631830 + AluSx SINE Alu 1 307 0 2212 83 0 4 chr12 55154634 55154912 -88631543 + AluY SINE Alu 1 277 -34 315 75 19 0 chr12 55154912 55154965 -88631490 + AluSp/q SINE Alu 247 300 -3 1103 173 31 0 chr12 55155007 55155198 -88631257 + AluJo SINE Alu 22 218 -94 681 206 0 8 chr12 55155199 55155325 -88631130 + AluJo/FRAM SINE Alu 171 295 -17 332 261 217 0 chr12 55155327 55155507 -88630948 + L3 LINE CR1 1241 1459 -118 245 274 193 22 chr12 55159040 55159175 -88627280 + MIR SINE MIR 57 214 -48 312 73 0 0 chr12 55159246 55159287 -88627168 - tRNA-Cys-TGC tRNA tRNA -34 41 1 253 280 196 33 chr12 55159288 55159502 -88626953 - L2 LINE L2 -39 3274 3026 1721 159 24 3 chr12 55159627 55159922 -88626533 + AluJb SINE Alu 1 301 -11 1102 119 0 6 chr12 55160260 55160458 -88625997 + AluSp SINE Alu 134 313 0 195 191 43 0 chr12 55160518 55160565 -88625890 - MIR SINE MIR -3 259 211 2480 77 0 6 chr12 55160573 55160884 -88625571 - AluSc SINE Alu 0 309 1 1141 252 94 28 chr12 55160946 55161509 -88624946 - L1ME4a LINE L1 -4 6117 5518 2317 27 0 0 chr12 55161510 55161773 -88624682 + L1P2 LINE L1 5406 5668 -487 1492 139 18 106 chr12 55162428 55162668 -88623787 - AluJo SINE Alu -11 301 96 1852 150 17 10 chr12 55162668 55162962 -88623493 + AluJo SINE Alu 1 296 -16 1492 139 18 106 chr12 55162962 55163051 -88623404 - AluJo SINE Alu -216 96 1 538 199 7 7 chr12 55163051 55163187 -88623268 - L1 LINE L1 -2872 3274 3139 1331 181 15 55 chr12 55163190 55163461 -88622994 - AluJo SINE Alu -52 260 1 754 190 7 0 chr12 55163465 55163602 -88622853 - FLAM_C SINE Alu 0 143 6 1164 237 16 8 chr12 55163623 55163986 -88622469 - L1 LINE L1 -3085 3061 2696 1048 128 0 0 chr12 55163986 55164135 -88622320 - AluSg/x SINE Alu -10 300 152 2088 128 0 4 chr12 55164135 55164416 -88622039 - AluSc SINE Alu -29 280 1 1141 252 94 28 chr12 55164478 55165041 -88621414 - L1ME4a LINE L1 -4 6117 5518 6467 23 3 7 chr12 55165042 55165795 -88620660 + L1PA4 LINE L1 5406 6155 0 2331 91 3 14 chr12 55165806 55166103 -88620352 + AluSp SINE Alu 1 294 -19 25 0 0 0 chr12 55166465 55166490 -88619965 + AT_rich Low_complexity Low_complexity 1 25 0 432 267 24 48 chr12 55166662 55166868 -88619587 + L2 LINE L2 3113 3313 0 2466 92 0 0 chr12 55166944 55167248 -88619207 - AluSq SINE Alu -9 304 1 210 37 0 0 chr12 55167527 55167554 -88618901 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr12 55170753 55170778 -88615677 + AT_rich Low_complexity Low_complexity 1 25 0 2243 94 30 0 chr12 55171723 55172021 -88614434 + AluSq SINE Alu 2 308 -5 212 158 18 0 chr12 55172869 55172926 -88613529 + (TA)n Simple_repeat Simple_repeat 2 59 0 1975 128 0 28 chr12 55173026 55173316 -88613139 + AluJo SINE Alu 13 294 -18 2427 84 0 0 chr12 55174527 55174826 -88611629 - AluY SINE Alu -12 299 1 2183 115 3 7 chr12 55176033 55176337 -88610118 - AluSq SINE Alu -10 303 1 25 31 0 0 chr12 55177180 55177212 -88609243 + AT_rich Low_complexity Low_complexity 1 32 0 2273 114 3 3 chr12 55177440 55177746 -88608709 - AluSx SINE Alu -6 306 1 1563 171 49 11 chr12 55178941 55179227 -88607228 - AluJo SINE Alu -14 298 2 2301 154 58 7 chr12 55181137 55181553 -88604902 - L1MC2 LINE L1 -1 6343 5907 840 122 0 15 chr12 55182296 55182427 -88604028 + FLAM_C SINE Alu 15 143 0 506 293 162 0 chr12 55182984 55183206 -88603249 - MIR SINE MIR -3 259 2 2021 101 0 11 chr12 55184201 55184518 -88601937 + AluSx SINE Alu 1 314 0 2170 88 17 0 chr12 55184709 55185003 -88601452 + AluSp SINE Alu 1 299 -14 328 294 5 108 chr12 55185113 55185234 -88601221 + MER5A DNA MER1_type 1 96 -93 1395 183 31 7 chr12 55185234 55185524 -88600931 + AluJo SINE Alu 1 297 -15 328 294 5 108 chr12 55185524 55185596 -88600859 + MER5A DNA MER1_type 96 174 -15 549 170 21 0 chr12 55185820 55185914 -88600541 - AluJ/FLAM SINE Alu -215 97 2 204 347 14 0 chr12 55186153 55186225 -88600230 + MIR SINE MIR 188 260 -2 21 0 0 0 chr12 55188245 55188266 -88598189 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr12 55188345 55188392 -88598063 + GC_rich Low_complexity Low_complexity 1 47 0 2183 113 0 0 chr12 55188916 55189225 -88597230 + AluSx SINE Alu 2 310 -2 715 191 0 29 chr12 55189225 55189352 -88597103 - FLAM_C SINE Alu -186 126 2 241 234 0 47 chr12 55191743 55191807 -88594648 - L2 LINE L2 -2 3311 3251 1713 188 0 7 chr12 55191887 55192185 -88594270 + AluJo SINE Alu 4 299 -13 224 279 149 54 chr12 55192484 55192706 -88593749 + L2 LINE L2 2147 2389 -925 217 224 17 17 chr12 55192797 55192855 -88593600 + L2 LINE L2 2589 2646 -668 1969 125 0 3 chr12 55192943 55193303 -88593152 - AluSx SINE Alu 0 312 11 1594 180 20 3 chr12 55193587 55193882 -88592573 - AluJb SINE Alu -8 304 5 706 169 0 46 chr12 55193986 55194116 -88592339 + AluJb SINE Alu 2 125 -187 2484 50 0 0 chr12 55194122 55194424 -88592031 + AluY SINE Alu 1 302 -9 2073 84 13 39 chr12 55194484 55194794 -88591661 + AluSq SINE Alu 1 302 -11 1349 193 3 45 chr12 55194911 55195082 -88591373 - AluJo SINE Alu -23 289 133 1847 114 7 50 chr12 55195082 55195381 -88591074 - AluSx SINE Alu -26 286 1 1349 193 3 45 chr12 55195381 55195499 -88590956 - AluJo SINE Alu -179 133 12 245 255 196 0 chr12 55195512 55195614 -88590841 - L1ME LINE L1 -488 5633 5512 1316 205 40 36 chr12 55195615 55195917 -88590538 + AluSx SINE Alu 1 303 -9 267 152 0 0 chr12 55195917 55195963 -88590492 + GA-rich Low_complexity Low_complexity 3 48 0 294 317 12 0 chr12 55195972 55196054 -88590401 - L1ME LINE L1 -2282 5526 5444 1162 41 28 0 chr12 55196098 55196243 -88590212 + L1PA4 LINE L1 6006 6154 -1 2136 111 10 0 chr12 55196296 55196603 -88589852 - AluSx SINE Alu -2 310 1 2230 88 0 0 chr12 55197063 55197357 -88589098 - AluY SINE Alu -16 295 2 690 162 8 0 chr12 55197399 55197516 -88588939 + AluJo SINE Alu 19 136 -176 180 143 0 0 chr12 55197539 55197566 -88588889 + (A)n Simple_repeat Simple_repeat 1 30 -5 1885 131 10 0 chr12 55197566 55197857 -88588598 - AluY SINE Alu -17 294 1 180 143 0 0 chr12 55197857 55197864 -88588591 + (A)n Simple_repeat Simple_repeat 29 35 0 1075 194 45 71 chr12 55197868 55198178 -88588277 - AluSx SINE Alu 0 302 1 284 144 56 56 chr12 55198179 55198269 -88588186 - Charlie4 DNA MER1_type -70 1891 1802 2221 114 0 0 chr12 55198369 55198675 -88587780 + AluSq SINE Alu 1 306 -7 2045 102 0 54 chr12 55198679 55198993 -88587462 + AluSp SINE Alu 5 301 -12 22 0 0 0 chr12 55199454 55199476 -88586979 + AT_rich Low_complexity Low_complexity 1 22 0 2118 109 0 7 chr12 55199544 55199847 -88586608 - AluSx SINE Alu -11 301 1 30 0 0 0 chr12 55201244 55201274 -88585181 + AT_rich Low_complexity Low_complexity 1 30 0 246 343 56 0 chr12 55201477 55201585 -88584870 + L3 LINE CR1 1083 1196 -381 1389 161 46 15 chr12 55201591 55201851 -88584604 + AluJo SINE Alu 1 268 -44 815 132 0 16 chr12 55202008 55202137 -88584318 + AluSg/x SINE Alu 170 296 -16 1387 107 25 0 chr12 55202137 55202333 -88584122 - AluSp SINE Alu -36 277 77 808 123 14 36 chr12 55202333 55202471 -88583984 - AluSq/x SINE Alu -178 135 1 2047 96 7 7 chr12 55202508 55202809 -88583646 + AluY SINE Alu 9 309 -2 2022 108 7 14 chr12 55202820 55203115 -88583340 + AluSx SINE Alu 7 299 -13 965 141 0 0 chr12 55203570 55203743 -88582712 + AluSg/x SINE Alu 135 307 0 215 200 0 0 chr12 55204594 55204634 -88581821 + C-rich Low_complexity Low_complexity 1 40 0 180 111 0 0 chr12 55204840 55204867 -88581588 + (CCGGG)n Simple_repeat Simple_repeat 5 31 0 1988 121 0 0 chr12 55204867 55205156 -88581299 + AluSx SINE Alu 9 297 -15 2207 63 0 11 chr12 55205879 55206184 -88580271 - AluY SINE Alu 0 302 1 398 145 16 0 chr12 55206320 55206382 -88580073 - AluS SINE Alu -237 63 1 1561 140 8 16 chr12 55206407 55206657 -88579798 + AluSx SINE Alu 1 248 -64 342 0 0 0 chr12 55206674 55206712 -88579743 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 400 48 32 63 chr12 55206736 55206799 -88579656 - AluY SINE Alu -25 285 225 424 314 23 23 chr12 55207051 55207226 -88579229 - L2 LINE L2 -575 2739 2565 991 82 15 0 chr12 55208355 55208489 -88577966 + AluSq/x SINE Alu 1 136 -176 2050 109 3 0 chr12 55208489 55208801 -88577654 + AluSx SINE Alu 1 313 0 1483 185 50 4 chr12 55208955 55209236 -88577219 + AluJb SINE Alu 1 294 -18 2076 125 0 0 chr12 55209240 55209535 -88576920 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr12 55209537 55209566 -88576889 + AT_rich Low_complexity Low_complexity 1 29 0 473 323 141 15 chr12 55210009 55210207 -88576248 - MIR SINE MIR -21 241 19 860 250 125 31 chr12 55210288 55210773 -88575682 + MER115 DNA AcHobo 118 690 -3 2263 94 0 0 chr12 55211038 55211336 -88575119 - AluSx SINE Alu -14 298 1 911 327 75 59 chr12 55211768 55212554 -88573901 + L2 LINE L2 2412 3197 -75 1337 223 106 17 chr12 55212556 55212707 -88573748 - L2 LINE L2 -1 3312 3176 1791 117 21 18 chr12 55212707 55213026 -88573429 + AluSq SINE Alu 11 313 0 1337 223 106 17 chr12 55213026 55213278 -88573177 - L2 LINE L2 -137 3176 2873 715 161 0 8 chr12 55213352 55213470 -88572985 - FRAM SINE Alu -2 174 58 569 286 28 22 chr12 55213470 55213648 -88572807 - L2 LINE L2 -605 2709 2531 237 277 92 0 chr12 55213647 55213712 -88572743 + L2 LINE L2 3242 3312 -1 * 536 154 16 95 chr12 55213820 55214015 -88572440 + L1M2 LINE L1 5256 5435 -807 623 155 5 34 chr12 55214154 55214296 -88572159 - L1M LINE L1 -856 5290 5163 772 166 113 0 chr12 55214296 55214447 -88572008 - AluY SINE Alu -14 297 130 2438 228 29 10 chr12 55214651 55215279 -88571176 - L1M4 LINE L1 -1050 5096 4457 864 196 48 61 chr12 55215286 55215597 -88570858 - AluJo SINE Alu 0 312 6 240 196 0 0 chr12 55215603 55215659 -88570796 - L1M4 LINE L1 -1676 4470 4415 980 158 37 0 chr12 55215659 55215823 -88570632 - FRAM SINE Alu -12 164 1 234 330 34 0 chr12 55215981 55216069 -88570386 + MIR SINE MIR 2 92 -170 1863 133 10 0 chr12 55216092 55216394 -88570061 - AluSx SINE Alu -1 311 7 719 259 193 25 chr12 55217191 55217512 -88568943 + MLT1J2 LTR MaLR 51 425 -25 1138 133 0 6 chr12 55217698 55217871 -88568584 + AluSg/x SINE Alu 129 300 -12 1507 188 62 0 chr12 55217938 55218214 -88568241 - AluJb SINE Alu -19 293 1 2098 135 0 0 chr12 55218254 55218565 -88567890 + AluSq SINE Alu 1 311 -2 376 248 72 8 chr12 55218565 55218690 -88567765 + L1M4 LINE L1 4708 4840 -1306 810 151 0 0 chr12 55218691 55218810 -88567645 + FLAM_C SINE Alu 6 124 -19 207 0 0 0 chr12 55218820 55218843 -88567612 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3341 60 7 5 chr12 55218985 55219419 -88567036 + L1PA4 LINE L1 5710 6144 -11 1286 275 25 7 chr12 55219432 55219835 -88566620 - L1M4 LINE L1 -2404 3742 3333 1028 129 0 6 chr12 55220182 55220368 -88566087 + AluSg/x SINE Alu 122 306 0 821 151 24 0 chr12 55220370 55220496 -88565959 - AluJo SINE Alu -178 134 6 696 220 42 23 chr12 55220497 55220622 -88565833 - L1M4 LINE L1 -1306 4840 4708 2258 113 0 0 chr12 55220622 55220933 -88565522 - AluSq SINE Alu -2 311 1 696 220 42 23 chr12 55220933 55221021 -88565434 - L1M4 LINE L1 -1438 4708 4623 833 145 0 43 chr12 55221025 55221163 -88565292 - FLAM_C SINE Alu -1 132 1 280 149 0 160 chr12 55221189 55221283 -88565172 - L1M4 LINE L1 -1507 4639 4561 1022 188 46 9 chr12 55221287 55221505 -88564950 + AluJo SINE Alu 85 310 -2 888 189 86 4 chr12 55221505 55221738 -88564717 - L1M4 LINE L1 -1574 4572 4321 716 186 108 42 chr12 55221738 55221905 -88564550 - AluJo SINE Alu -13 299 122 801 202 34 84 chr12 55221905 55222052 -88564403 - L1M4 LINE L1 -1838 4308 4176 1690 174 3 26 chr12 55222052 55222362 -88564093 - AluJo SINE Alu -9 303 1 801 202 34 84 chr12 55222362 55222452 -88564003 - L1M4 LINE L1 -1970 4176 4083 1808 169 0 0 chr12 55222456 55222758 -88563697 - AluJb SINE Alu -10 302 1 261 167 0 0 chr12 55222928 55222982 -88563473 - L1MC4 LINE L1 -1 8041 7988 4434 215 93 11 chr12 55222986 55223619 -88562836 - L1MC4 LINE L1 -140 7902 7322 2152 87 0 3 chr12 55223619 55223931 -88562524 - AluSp SINE Alu 0 311 1 4434 215 93 11 chr12 55223931 55224431 -88562024 - L1MC4 LINE L1 -720 7322 6675 394 243 79 43 chr12 55224432 55224572 -88561883 - L1MC4 LINE L1 -1283 6759 6615 318 248 38 105 chr12 55224468 55224601 -88561854 + L1MC4 LINE L1 6579 6702 -1340 * 31 26 0 0 chr12 55224601 55224639 -88561816 + AT_rich Low_complexity Low_complexity 1 38 0 397 260 98 32 chr12 55224646 55224892 -88561563 - L1MC4a LINE L1 -1190 6618 6442 2094 117 0 0 chr12 55225171 55225470 -88560985 - AluSx SINE Alu -13 299 1 2126 128 0 10 chr12 55225826 55226138 -88560317 + AluSx SINE Alu 1 309 -3 285 331 47 41 chr12 55226138 55226307 -88560148 - L2 LINE L2 -510 2804 2635 2469 123 32 74 chr12 55226413 55226617 -88559838 + MLT1C LTR MaLR 1 179 -288 2230 92 0 13 chr12 55226617 55226922 -88559533 + AluSx SINE Alu 1 301 -11 2469 123 32 74 chr12 55226922 55227149 -88559306 + MLT1C LTR MaLR 179 414 -53 180 97 0 0 chr12 55227149 55227180 -88559275 + (TTAG)n Simple_repeat Simple_repeat 2 32 0 767 250 6 0 chr12 55227182 55227338 -88559117 - AluJo SINE Alu -30 282 126 2100 114 3 10 chr12 55227340 55227648 -88558807 - AluSq SINE Alu -6 307 2 358 209 0 0 chr12 55227648 55227715 -88558740 + MLT1B LTR MaLR 324 390 0 564 266 42 0 chr12 55227719 55227862 -88558593 + MIR SINE MIR 81 229 -33 195 314 110 17 chr12 55229147 55229265 -88557190 - MIR SINE MIR -78 184 56 205 182 0 0 chr12 55229550 55229583 -88556872 + (CA)n Simple_repeat Simple_repeat 2 34 0 2171 103 0 28 chr12 55229833 55230154 -88556301 + AluSx SINE Alu 1 312 0 198 247 233 0 chr12 55230242 55230315 -88556140 + MIR SINE MIR 2 91 -171 1924 155 3 0 chr12 55230335 55230644 -88555811 - AluSx SINE Alu -2 310 1 1973 88 0 88 chr12 55230661 55230818 -88555637 - AluSx SINE Alu -22 290 174 351 0 0 0 chr12 55230818 55230857 -88555598 + (TG)n Simple_repeat Simple_repeat 2 40 0 1973 88 0 88 chr12 55230857 55231017 -88555438 - AluSx SINE Alu -138 174 1 788 168 102 0 chr12 55231262 55231473 -88554982 - AluJb SINE Alu 0 356 132 408 289 78 7 chr12 55231480 55231622 -88554833 - MIR SINE MIR -70 192 41 208 269 0 26 chr12 55232531 55232609 -88553846 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 413 343 72 24 chr12 55233065 55233272 -88553183 - L3 LINE CR1 -26 1551 1335 832 231 172 5 chr12 55233788 55233991 -88552464 - MIR SINE MIR -6 256 20 396 43 11 65 chr12 55235402 55235495 -88550960 + (TATAA)n Simple_repeat Simple_repeat 2 89 0 320 222 14 0 chr12 55235496 55235568 -88550887 - AluJ/FLAM SINE Alu -224 78 6 2281 164 22 90 chr12 55235618 55235853 -88550602 + MLT2B3 LTR ERVL 1 250 -304 2200 128 0 7 chr12 55235853 55236157 -88550298 - AluSx SINE Alu -10 302 1 2281 164 22 90 chr12 55236157 55236457 -88549998 + MLT2B3 LTR ERVL 250 500 -54 758 87 0 0 chr12 55236458 55236562 -88549893 - AluSg/x SINE Alu -1 311 208 1822 101 0 4 chr12 55236563 55236801 -88549654 - AluSq SINE Alu -76 237 1 387 147 15 0 chr12 55236801 55236869 -88549586 + MLT2A2 LTR ERVL 385 453 0 201 39 0 0 chr12 55236897 55236923 -88549532 + (TG)n Simple_repeat Simple_repeat 2 27 0 8042 141 12 35 chr12 55236923 55237523 -88548932 - ERVL LTR ERVL -331 5433 4821 2214 126 7 0 chr12 55237523 55237817 -88548638 + AluSx SINE Alu 1 296 -16 8042 141 12 35 chr12 55237817 55238610 -88547845 - ERVL LTR ERVL -943 4821 4072 7378 48 12 12 chr12 55238615 55240002 -88546453 - L1PA6 LINE L1 0 6154 4762 515 135 42 10 chr12 55240002 55240092 -88546363 - L1P5 LINE L1 -585 5571 5479 922 115 61 14 chr12 55240092 55240240 -88546215 - AluSg/x SINE Alu 0 310 156 1222 91 83 0 chr12 55240240 55240532 -88545923 - L1P5 LINE L1 -665 5491 5179 5078 188 62 2 chr12 55240532 55241290 -88545165 - ERVL LTR ERVL -1615 4039 3207 2312 112 0 3 chr12 55241290 55241593 -88544862 + AluSq SINE Alu 1 302 -11 5078 188 62 2 chr12 55241593 55241817 -88544638 - ERVL LTR ERVL -2447 3207 2998 625 172 0 0 chr12 55241818 55241917 -88544538 + FRAM SINE Alu 64 162 -14 951 171 37 0 chr12 55241918 55242082 -88544373 - ERVL LTR ERVL -2993 2771 2602 482 242 60 83 chr12 55242090 55242286 -88544169 + LTR26 LTR ERV1 357 547 -56 1899 166 3 3 chr12 55242286 55242594 -88543861 - AluJo SINE Alu -4 308 1 482 242 60 83 chr12 55242594 55242649 -88543806 + LTR26 LTR ERV1 547 602 -1 2666 158 62 4 chr12 55242649 55243149 -88543306 - ERVL LTR ERVL -4318 1446 918 2042 151 0 0 chr12 55243152 55243451 -88543004 - AluSx SINE Alu -13 299 1 679 177 104 0 chr12 55243453 55243602 -88542853 + L1M4 LINE L1 1030 1205 -5337 1583 196 3 7 chr12 55243602 55243887 -88542568 - AluJo SINE Alu -25 287 4 679 177 104 0 chr12 55243887 55243929 -88542526 + L1M4 LINE L1 1205 1241 -5301 276 74 86 123 chr12 55243930 55243974 -88542481 - MSTC LTR MaLR 0 428 384 198 0 0 0 chr12 55243974 55243996 -88542459 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2164 89 3 3 chr12 55243998 55244280 -88542175 - AluSx SINE Alu -30 282 1 276 74 86 123 chr12 55244280 55244313 -88542142 - MSTC LTR MaLR -45 383 351 2146 136 30 33 chr12 55244347 55244669 -88541786 - MSTC LTR MaLR -62 366 44 2167 123 3 0 chr12 55244669 55244961 -88541494 + AluSx SINE Alu 1 293 -19 2146 136 30 33 chr12 55244961 55245005 -88541450 - MSTC LTR MaLR -384 44 1 333 71 36 0 chr12 55245006 55245062 -88541393 + L1M4 LINE L1 1239 1296 -5246 822 150 0 23 chr12 55245073 55245206 -88541249 + FLAM_C SINE Alu 12 141 -2 2237 92 7 20 chr12 55245232 55245536 -88540919 + AluSp SINE Alu 1 300 -13 1942 157 0 3 chr12 55245543 55245829 -88540626 + AluJb SINE Alu 1 285 -27 761 107 16 0 chr12 55245829 55245950 -88540505 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 2626 219 95 27 chr12 55245953 55246482 -88539973 + L1M4 LINE L1 1292 1784 -4862 2252 128 0 0 chr12 55246482 55246794 -88539661 + AluSx SINE Alu 1 312 0 2626 219 95 27 chr12 55246794 55246845 -88539610 + L1M4 LINE L1 1784 1830 -4816 715 192 0 8 chr12 55246845 55246975 -88539480 + FLAM_A SINE Alu 5 133 0 2626 219 95 27 chr12 55246975 55247322 -88539133 + L1M4 LINE L1 1830 2283 -4363 2254 118 3 0 chr12 55247328 55247634 -88538821 + AluSp SINE Alu 1 307 -6 414 228 138 0 chr12 55247648 55247894 -88538561 + L1M4 LINE L1 2484 2770 -3874 678 202 0 17 chr12 55247896 55248015 -88538440 + FLAM_C SINE Alu 3 119 -24 201 74 0 0 chr12 55248045 55248072 -88538383 + (A)n Simple_repeat Simple_repeat 1 27 0 431 238 12 12 chr12 55248072 55248236 -88538219 + L1M4 LINE L1 2752 2915 -3729 2194 116 3 3 chr12 55248241 55248544 -88537911 - AluSc SINE Alu -1 308 6 1873 167 0 17 chr12 55248549 55248849 -88537606 - AluJo SINE Alu -15 297 3 1147 214 0 35 chr12 55248904 55249005 -88537450 + L1M4 LINE L1 2924 3027 -3617 2115 115 44 3 chr12 55249005 55249301 -88537154 + AluSx SINE Alu 1 308 -4 1147 214 0 35 chr12 55249301 55249488 -88536967 + L1M4 LINE L1 3027 3202 -3442 2043 145 0 0 chr12 55249490 55249773 -88536682 + AluSx SINE Alu 1 283 -29 1064 128 0 0 chr12 55249773 55249922 -88536533 + AluSg/x SINE Alu 154 302 -10 1060 240 16 8 chr12 55249922 55250285 -88536170 + L1M4 LINE L1 3194 3559 -3085 704 215 8 0 chr12 55250303 55250433 -88536022 + FLAM_C SINE Alu 3 133 0 1355 181 15 55 chr12 55250447 55250718 -88535737 + AluJo SINE Alu 1 260 -52 506 199 7 7 chr12 55250721 55250857 -88535598 + L1M4 LINE L1 3637 3772 -2872 1524 142 18 106 chr12 55250857 55250946 -88535509 + AluJo SINE Alu 1 96 -216 1811 159 17 7 chr12 55250946 55251242 -88535213 - AluJo SINE Alu -13 299 1 1524 142 18 106 chr12 55251242 55251482 -88534973 + AluJo SINE Alu 96 301 -11 619 269 22 41 chr12 55251949 55252269 -88534186 + L1M4 LINE L1 3762 4075 -2569 781 115 0 73 chr12 55252269 55252461 -88533994 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 268 150 0 0 chr12 55252461 55252501 -88533954 + (TC)n Simple_repeat Simple_repeat 2 41 0 448 119 30 0 chr12 55253281 55253348 -88533107 - AluS SINE Alu -243 70 2 1293 104 0 16 chr12 55253368 55253550 -88532905 + AluSq SINE Alu 118 296 -17 317 331 15 15 chr12 55258897 55259033 -88527422 + MIR3 SINE MIR 14 149 -59 230 81 27 0 chr12 55262097 55262134 -88524321 + (GGA)n Simple_repeat Simple_repeat 1 38 0 522 0 0 0 chr12 55262624 55262682 -88523773 + (CA)n Simple_repeat Simple_repeat 1 58 0 575 279 77 36 chr12 55264335 55264582 -88521873 - MIR SINE MIR -4 258 2 275 305 97 30 chr12 55264596 55264748 -88521707 - MIR SINE MIR -62 146 3 273 260 68 14 chr12 55264836 55264982 -88521473 - L1ME4a LINE L1 0 6121 5968 729 192 0 0 chr12 55265902 55266022 -88520433 + AluJo/FLAM SINE Alu 2 121 -191 1207 129 6 0 chr12 55266022 55266192 -88520263 - AluSg/x SINE Alu -5 307 137 493 275 44 6 chr12 55266403 55266563 -88519892 - L1ME3A LINE L1 0 6170 6005 720 61 0 30 chr12 55266714 55266813 -88519642 - AluSc SINE Alu -8 301 206 2488 66 0 10 chr12 55267764 55268069 -88518386 - AluY SINE Alu -9 302 1 21 36 0 0 chr12 55270487 55270515 -88515940 + AT_rich Low_complexity Low_complexity 1 28 0 2368 93 0 3 chr12 55270626 55270927 -88515528 - AluSq SINE Alu -13 300 1 202 291 311 0 chr12 55271276 55271379 -88515076 + L3 LINE CR1 1440 1574 -3 1299 210 78 4 chr12 55271947 55272204 -88514251 + AluJb SINE Alu 6 281 -31 21 0 0 0 chr12 55272204 55272225 -88514230 + AT_rich Low_complexity Low_complexity 1 21 0 2121 128 0 7 chr12 55272225 55272529 -88513926 - AluSx SINE Alu -10 302 1 2342 105 3 10 chr12 55272594 55272900 -88513555 - AluSg SINE Alu -6 304 1 1712 172 43 4 chr12 55272905 55273184 -88513271 - AluJb SINE Alu -22 290 1 1800 172 17 0 chr12 55273223 55273238 -88513217 - AluJo SINE Alu -16 296 283 414 0 0 0 chr12 55273238 55273284 -88513171 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1800 172 17 0 chr12 55273284 55273559 -88512896 - AluJo SINE Alu -29 283 1 710 184 9 0 chr12 55273560 55273674 -88512781 - FLAM_C SINE Alu -18 115 1 2211 125 3 0 chr12 55274959 55275256 -88511199 + AluSp SINE Alu 1 298 -15 1729 136 12 0 chr12 55275643 55275894 -88510561 + AluJb SINE Alu 42 295 -17 435 261 9 0 chr12 55275948 55276063 -88510392 + L1ME LINE L1 5600 5715 -447 189 0 0 0 chr12 55276065 55276086 -88510369 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1792 144 38 0 chr12 55276090 55276354 -88510101 - AluSx SINE Alu -37 275 2 1848 157 13 10 chr12 55276357 55276657 -88509798 - AluJb SINE Alu -11 301 1 2626 64 0 6 chr12 55276668 55276982 -88509473 - AluSx SINE Alu 0 312 1 2159 107 0 0 chr12 55276986 55277266 -88509189 - AluSx SINE Alu -8 304 25 1528 115 122 20 chr12 55277312 55277518 -88508937 - Tigger2 DNA MER2_type -110 2608 2362 225 0 0 0 chr12 55277518 55277543 -88508912 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1528 115 122 20 chr12 55277543 55277632 -88508823 - Tigger2 DNA MER2_type -356 2362 2283 2274 111 10 0 chr12 55277632 55277930 -88508525 - AluSp SINE Alu -12 301 1 261 204 56 0 chr12 55277952 55278006 -88508449 - Tigger2 DNA MER2_type -2660 58 2 2307 83 4 0 chr12 55278484 55278782 -88507673 - AluSq SINE Alu 0 304 6 444 257 173 16 chr12 55279977 55280226 -88506229 - L1MC4a LINE L1 -1935 5873 5586 280 331 68 38 chr12 55280842 55280975 -88505480 - MIR SINE MIR -77 185 49 2293 79 0 0 chr12 55280975 55281275 -88505180 - AluY SINE Alu 0 301 2 2249 130 0 0 chr12 55281284 55281584 -88504871 - AluSx SINE Alu -11 301 2 2087 276 108 14 chr12 55282011 55282583 -88503872 - L2 LINE L2 0 3313 2796 2220 91 7 3 chr12 55282583 55282868 -88503587 + AluSq SINE Alu 14 299 -14 2087 276 108 14 chr12 55282868 55283309 -88503146 - L2 LINE L2 -517 2796 2209 1121 201 14 14 chr12 55283348 55283567 -88502888 - AluJb SINE Alu -93 219 1 924 243 31 42 chr12 55283567 55283822 -88502633 - L2 LINE L2 -1094 2220 1967 2173 115 0 0 chr12 55283822 55284118 -88502337 + AluY SINE Alu 7 302 -9 924 243 31 42 chr12 55284118 55284150 -88502305 - L2 LINE L2 -1347 1967 1936 1412 112 0 5 chr12 55284247 55284443 -88502012 - AluSx SINE Alu -117 195 1 2098 150 0 0 chr12 55284914 55285220 -88501235 + AluSx SINE Alu 1 306 -6 528 113 0 0 chr12 55285307 55285378 -88501077 + AluJ/FLAM SINE Alu 2 72 -240 706 177 113 0 chr12 55290078 55290219 -88496236 + MER5A DNA MER1_type 32 188 -1 2409 76 0 3 chr12 55291532 55291821 -88494634 + AluSq SINE Alu 3 290 -23 197 239 261 11 chr12 55292492 55292580 -88493875 - MIR SINE MIR -62 146 37 2399 89 3 0 chr12 55292741 55293044 -88493411 + AluSp SINE Alu 1 304 -9 189 367 0 0 chr12 55293085 55293164 -88493291 + L3 LINE CR1 941 1019 -558 2408 89 0 7 chr12 55293274 55293576 -88492879 + AluSx SINE Alu 1 300 -12 257 284 188 17 chr12 55293597 55293773 -88492682 + L3 LINE CR1 1246 1451 -126 226 241 19 0 chr12 55293897 55293951 -88492504 - MIR SINE MIR -63 145 91 235 333 54 9 chr12 55293986 55294097 -88492358 + L3 LINE CR1 1459 1574 -3 1100 127 13 0 chr12 55294509 55294667 -88491788 - AluSq SINE Alu -18 295 136 300 309 79 40 chr12 55295024 55295150 -88491305 - L2 LINE L2 -1 3271 3141 28 29 0 0 chr12 55295391 55295426 -88491029 + AT_rich Low_complexity Low_complexity 1 35 0 279 238 16 0 chr12 55295437 55295500 -88490955 - MIR SINE MIR -34 228 165 281 203 31 0 chr12 55295509 55295573 -88490882 + MIR SINE MIR 173 238 -24 322 311 68 8 chr12 55295589 55295721 -88490734 - MIR SINE MIR -110 152 13 227 273 0 0 chr12 55295818 55295873 -88490582 - L2 LINE L2 -564 2750 2696 282 260 52 0 chr12 55296220 55296316 -88490139 + L2 LINE L2 3170 3270 -2 2449 82 0 0 chr12 55296398 55296692 -88489763 + AluSc SINE Alu 1 294 -15 794 240 42 0 chr12 55296813 55297005 -88489450 - MIR SINE MIR 0 262 63 335 302 10 10 chr12 55297076 55297172 -88489283 - MER5A DNA MER1_type -83 106 11 214 191 0 0 chr12 55298068 55298110 -88488345 + L3 LINE CR1 1535 1576 -1 1660 186 0 0 chr12 55298534 55298798 -88487657 + MLT1C LTR MaLR 202 465 -2 827 182 111 25 chr12 55299049 55299247 -88487208 + MER58C DNA MER1_type 1 215 0 340 321 229 0 chr12 55299397 55299764 -88486691 - L2 LINE L2 -1004 2310 1860 1229 153 0 0 chr12 55300161 55300350 -88486105 - AluSg/x SINE Alu -3 307 119 453 97 87 58 chr12 55300492 55300595 -88485860 + MER53 DNA DNA 3 108 -81 1612 167 62 3 chr12 55300891 55301179 -88485276 - AluJb SINE Alu -7 305 1 214 174 22 22 chr12 55302716 55302762 -88483693 + L2 LINE L2 3215 3260 -12 253 268 0 0 chr12 55302858 55302940 -88483515 - MIR SINE MIR -1 261 180 1655 258 31 78 chr12 55302956 55303688 -88482767 - L1ME3A LINE L1 -15 6155 5458 487 238 24 48 chr12 55303704 55303830 -88482625 - MIR SINE MIR -106 156 34 23 0 0 0 chr12 55303934 55303957 -88482498 + AT_rich Low_complexity Low_complexity 1 23 0 248 314 67 0 chr12 55304722 55304827 -88481628 + L2 LINE L2 3158 3269 -3 315 50 0 0 chr12 55305739 55305779 -88480676 + AluSq/x SINE Alu 81 120 -183 1763 170 7 7 chr12 55306671 55306983 -88479472 + AluJo SINE Alu 1 312 0 182 306 32 0 chr12 55306992 55307054 -88479401 - L3b LINE CR1 -89 1494 1431 29 0 0 0 chr12 55307691 55307720 -88478735 + AT_rich Low_complexity Low_complexity 1 29 0 2336 103 0 7 chr12 55307730 55308031 -88478424 + AluSx SINE Alu 1 299 -13 297 100 0 0 chr12 55308565 55308615 -88477840 + (TG)n Simple_repeat Simple_repeat 2 51 0 279 79 0 0 chr12 55310011 55310049 -88476406 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 250 0 0 chr12 55310849 55310917 -88475538 + (CCCTAA)n Simple_repeat Simple_repeat 3 70 0 488 234 141 5 chr12 55312425 55312609 -88473846 - MIR SINE MIR 0 262 54 180 0 0 0 chr12 55313009 55313029 -88473426 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2347 106 18 3 chr12 55313039 55313378 -88473077 - L1PA16 LINE L1 -9 6157 5814 180 0 0 0 chr12 55313657 55313677 -88472778 + (TC)n Simple_repeat Simple_repeat 2 21 0 548 291 80 0 chr12 55313722 55313897 -88472558 - MIR SINE MIR -15 247 59 449 233 80 40 chr12 55315130 55315306 -88471149 + MIR SINE MIR 20 202 -60 23 0 0 0 chr12 55315729 55315752 -88470703 + AT_rich Low_complexity Low_complexity 1 23 0 2645 7 0 0 chr12 55317184 55317464 -88468991 + AluYb8 SINE Alu 27 306 -12 309 151 0 0 chr12 55317833 55317886 -88468569 + (TG)n Simple_repeat Simple_repeat 1 53 0 697 267 0 11 chr12 55318141 55318321 -88468134 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr12 55319037 55319059 -88467396 + AT_rich Low_complexity Low_complexity 1 22 0 2378 57 0 0 chr12 55319186 55319498 -88466957 - AluY SINE Alu 0 313 2 273 119 0 0 chr12 55319964 55320006 -88466449 + (CA)n Simple_repeat Simple_repeat 2 43 0 389 264 104 37 chr12 55320995 55321158 -88465297 - L2 LINE L2 0 3313 3140 206 261 57 34 chr12 55321389 55321477 -88464978 + MIR SINE MIR 16 105 -103 407 270 104 12 chr12 55322220 55322383 -88464072 + L2 LINE L2 3118 3295 -18 1662 167 3 14 chr12 55322384 55322666 -88463789 - AluJo SINE Alu -11 301 23 4720 165 50 20 chr12 55322987 55323936 -88462519 + L1MB8 LINE L1 4337 5359 -819 2269 76 35 0 chr12 55323936 55324224 -88462231 + AluY SINE Alu 1 298 -13 4720 165 50 20 chr12 55324224 55324838 -88461617 + L1MB8 LINE L1 5359 5953 -225 489 168 42 21 chr12 55324910 55325005 -88461450 + L1MB8 LINE L1 5939 6035 -143 226 204 0 0 chr12 55325006 55325055 -88461400 + LTR66 LTR ERVL 390 438 -172 308 306 0 0 chr12 55325056 55325141 -88461314 - L1MC4 LINE L1 -1343 6699 6615 2191 107 0 14 chr12 55325154 55325443 -88461012 - AluSg SINE Alu -25 285 1 2147 125 0 3 chr12 55325507 55325810 -88460645 - AluSx SINE Alu -10 302 1 1882 163 10 0 chr12 55328146 55328440 -88458015 - AluJb SINE Alu -15 297 1 325 344 96 6 chr12 55329489 55329646 -88456809 + L2 LINE L2 2871 3041 -231 193 269 58 0 chr12 55329903 55329955 -88456500 + L2 LINE L2 3242 3296 -17 989 187 37 23 chr12 55329986 55330200 -88456255 - L1PA16 LINE L1 0 6166 5950 183 348 33 11 chr12 55332367 55332459 -88453996 + L3b LINE CR1 1411 1504 -79 340 280 150 0 chr12 55333012 55333112 -88453343 + L2 LINE L2 3140 3254 -18 1841 163 17 0 chr12 55333730 55334024 -88452431 + AluJb SINE Alu 1 299 -13 201 147 0 0 chr12 55334045 55334079 -88452376 + (A)n Simple_repeat Simple_repeat 1 34 0 2250 106 0 0 chr12 55334696 55334997 -88451458 - L1PA16 LINE L1 -62 6104 5804 2515 57 0 0 chr12 55336418 55336716 -88449739 - AluY SINE Alu -13 298 1 2194 128 0 0 chr12 55336767 55337064 -88449391 + AluSx SINE Alu 1 297 -15 402 21 0 0 chr12 55337401 55337448 -88449007 + (TG)n Simple_repeat Simple_repeat 1 47 0 470 308 97 65 chr12 55337961 55338344 -88448111 + L1MEd LINE L1 2 416 -5703 1448 169 134 0 chr12 55338344 55338605 -88447850 + AluJo SINE Alu 1 296 -6 470 308 97 65 chr12 55338605 55338870 -88447585 + L1MEd LINE L1 416 671 -5448 471 251 123 23 chr12 55339064 55339428 -88447027 + L1MEd LINE L1 950 1257 -4862 282 73 0 0 chr12 55339543 55339584 -88446871 + (TA)n Simple_repeat Simple_repeat 2 42 0 6065 240 91 49 chr12 55339586 55340072 -88446383 + L1ME1 LINE L1 1070 1534 -4681 5171 25 3 2 chr12 55340072 55340679 -88445776 - L1PA4 LINE L1 -3 6152 5545 6065 240 91 49 chr12 55340679 55340959 -88445496 + L1ME1 LINE L1 1534 1801 -4414 1637 139 0 20 chr12 55340959 55341249 -88445206 + AluJb SINE Alu 48 312 0 6065 240 91 49 chr12 55341249 55342751 -88443704 + L1ME1 LINE L1 1801 3239 -2976 2027 130 3 3 chr12 55342751 55343088 -88443367 - AluSx SINE Alu 0 337 1 6065 240 91 49 chr12 55343088 55343520 -88442935 + L1ME1 LINE L1 3239 3651 -2564 10372 38 1 0 chr12 55343520 55345538 -88440917 - L1PA5 LINE L1 -11 6143 4123 6065 240 91 49 chr12 55345538 55346204 -88440251 + L1ME1 LINE L1 3651 4539 -1676 954 193 17 21 chr12 55346231 55346470 -88439985 - L1MB3 LINE L1 -2 6181 5944 2568 201 53 75 chr12 55346474 55346813 -88439642 + L1ME1 LINE L1 4921 5266 -969 429 20 0 0 chr12 55346813 55346863 -88439592 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 289 138 121 0 chr12 55346863 55346921 -88439534 - AluY SINE Alu -103 198 134 2568 201 53 75 chr12 55346921 55347538 -88438917 + L1ME1 LINE L1 5264 5909 -326 204 105 123 0 chr12 55347636 55347693 -88438762 + (AATAG)n Simple_repeat Simple_repeat 4 67 0 448 297 161 0 chr12 55347709 55347864 -88438591 + MER5A DNA MER1_type 10 189 0 1696 101 13 4 chr12 55348361 55348589 -88437866 - AluSx SINE Alu -69 243 14 296 326 94 9 chr12 55348611 55348942 -88437513 - HAL1 LINE L1 -938 1569 1211 544 323 55 5 chr12 55350408 55350609 -88435846 + MIR SINE MIR 52 262 0 380 310 203 5 chr12 55351860 55352047 -88434408 + L2 LINE L2 2325 2548 -766 1254 54 12 0 chr12 55352281 55352487 -88433968 + L1PA8 LINE L1 5981 6188 0 418 274 0 35 chr12 55354063 55354176 -88432279 - L2 LINE L2 -16 3297 3189 200 208 19 38 chr12 55354408 55354461 -88431994 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 1086 99 9 35 chr12 55354552 55355004 -88431451 + (TTTC)n Simple_repeat Simple_repeat 1 620 0 1766 138 4 11 chr12 55355004 55355280 -88431175 - AluJo SINE Alu -38 274 1 204 277 85 32 chr12 55355433 55355527 -88430928 - MIR SINE MIR -46 216 118 366 80 0 0 chr12 55355591 55355641 -88430814 + (CA)n Simple_repeat Simple_repeat 1 50 0 325 314 46 26 chr12 55355851 55356004 -88430451 - L3b LINE CR1 -186 1397 1242 1163 107 0 0 chr12 55356732 55356909 -88429546 - L1MA6 LINE L1 0 6300 6124 243 0 0 0 chr12 55357847 55357874 -88428581 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 279 228 0 0 chr12 55358114 55358171 -88428284 - L2 LINE L2 0 3313 3257 275 280 183 0 chr12 55358786 55358879 -88427576 + L2 LINE L2 3156 3265 -7 2358 95 0 7 chr12 55359436 55359741 -88426714 + AluSg SINE Alu 1 303 -7 363 300 137 39 chr12 55360015 55360248 -88426207 + MIR SINE MIR 2 257 -5 865 267 31 4 chr12 55363084 55363309 -88423146 + MIR SINE MIR 15 245 -17 4324 66 11 0 chr12 55363583 55364147 -88422308 - L1PA5 LINE L1 -3 6151 5582 495 296 60 20 chr12 55364266 55364465 -88421990 - MIR SINE MIR -53 209 3 1744 169 51 0 chr12 55364680 55364975 -88421480 + AluJo SINE Alu 1 310 -2 273 171 0 37 chr12 55364977 55365059 -88421396 + GA-rich Low_complexity Low_complexity 3 81 0 881 133 6 17 chr12 55365059 55365239 -88421216 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1709 143 86 7 chr12 55365295 55365574 -88420881 + AluJo SINE Alu 3 303 -9 494 251 98 25 chr12 55365584 55365812 -88420643 + L1ME1 LINE L1 5885 6132 -30 363 306 65 0 chr12 55365923 55366031 -88420424 + L2 LINE L2 3142 3256 -16 482 318 125 67 chr12 55366717 55367605 -88418850 + L2 LINE L2 2347 3270 -2 389 267 0 40 chr12 55368077 55368178 -88418277 + L2 LINE L2 3216 3312 -1 24 32 0 0 chr12 55368209 55368240 -88418215 + AT_rich Low_complexity Low_complexity 1 31 0 291 313 28 11 chr12 55368488 55368762 -88417693 - L1MC4a LINE L1 -284 5886 5636 741 204 0 0 chr12 55368771 55368918 -88417537 + L1MB2 LINE L1 4020 4166 -1980 * 2276 189 20 0 chr12 55368905 55369510 -88416945 + L1MB2 LINE L1 4824 5443 -725 3175 164 50 47 chr12 55369670 55369837 -88416618 + L1MB2 LINE L1 5446 5611 -560 2281 116 0 10 chr12 55369837 55370148 -88416307 + AluSq SINE Alu 6 313 0 1933 88 3 68 chr12 55370156 55370452 -88416003 + AluY SINE Alu 34 310 -1 3175 164 50 47 chr12 55370452 55370999 -88415456 + L1MB2 LINE L1 5617 6171 0 718 273 31 47 chr12 55371001 55371601 -88414854 - L1MC4a LINE L1 -530 5632 5036 1982 126 0 3 chr12 55371945 55372231 -88414224 + AluSx SINE Alu 23 307 -5 201 141 16 62 chr12 55373908 55373972 -88412483 + T-rich Low_complexity Low_complexity 4 64 0 250 143 18 36 chr12 55373980 55374036 -88412419 + MER116 DNA Mariner 1 55 -25 1791 164 3 3 chr12 55374049 55374347 -88412108 - AluJb SINE Alu -9 303 6 868 208 68 10 chr12 55374441 55374633 -88411822 + MIR SINE MIR 60 262 0 421 339 4 9 chr12 55374917 55375147 -88411308 - L1ME3A LINE L1 -230 5923 5695 895 210 69 123 chr12 55375150 55375430 -88411025 - L2 LINE L2 -1 3312 3057 2211 101 22 35 chr12 55375430 55375747 -88410708 + AluSq SINE Alu 1 313 0 895 210 69 123 chr12 55375747 55375857 -88410598 - L2 LINE L2 -256 3057 2943 505 255 38 84 chr12 55375928 55376171 -88410284 - L1ME3A LINE L1 -504 5641 5388 2034 85 4 11 chr12 55376171 55376441 -88410014 - AluSp SINE Alu 0 313 46 505 255 38 84 chr12 55376441 55376560 -88409895 - L1ME3A LINE L1 -757 5388 5265 2011 135 21 0 chr12 55376560 55376849 -88409606 - AluJb SINE Alu -17 295 1 505 255 38 84 chr12 55376849 55377120 -88409335 - L1ME3A LINE L1 -880 5265 5041 1263 256 133 21 chr12 55377141 55377809 -88408646 - L2 LINE L2 -2 3311 2542 1488 123 6 71 chr12 55377821 55378146 -88408309 + L1 LINE L1 5098 5401 -745 493 262 35 68 chr12 55378146 55378314 -88408141 - L2 LINE L2 -780 2534 2312 833 141 0 15 chr12 55378314 55378449 -88408006 - FLAM_C SINE Alu 0 133 1 493 262 35 68 chr12 55378449 55378540 -88407915 - L2 LINE L2 -1002 2312 2220 216 0 0 0 chr12 55378591 55378615 -88407840 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2239 125 6 0 chr12 55378615 55378926 -88407529 - AluSq SINE Alu 0 313 1 255 231 0 26 chr12 55378927 55379005 -88407450 - L1ME3A LINE L1 -1119 5010 4935 321 333 88 0 chr12 55379129 55379243 -88407212 - L2 LINE L2 -614 2700 2577 333 206 69 49 chr12 55379280 55379382 -88407073 - LTR33A LTR ERVL -4 519 416 2199 102 7 10 chr12 55379591 55379894 -88406561 + AluSx SINE Alu 1 302 -10 906 269 84 17 chr12 55379896 55380242 -88406213 - ERVL LTR ERVL -1362 4402 4034 864 257 104 59 chr12 55380251 55380477 -88405978 - L1MEd LINE L1 -2941 3188 2974 1276 158 22 5 chr12 55380477 55380699 -88405756 - L1MC1 LINE L1 0 6333 6108 864 257 104 59 chr12 55380699 55381145 -88405310 - L1MEd LINE L1 -3155 2974 2549 2408 70 3 13 chr12 55381145 55381445 -88405010 - AluSp SINE Alu -16 297 1 864 257 104 59 chr12 55381445 55381579 -88404876 - L1MEd LINE L1 -3580 2549 2422 1019 157 19 14 chr12 55381579 55381795 -88404660 - L1MB4 LINE L1 0 6180 5964 864 257 104 59 chr12 55381795 55381810 -88404645 - L1MEd LINE L1 -3707 2422 2409 678 159 15 61 chr12 55381810 55381942 -88404513 - FLAM_C SINE Alu -7 126 1 864 257 104 59 chr12 55381942 55382172 -88404283 - L1MEd LINE L1 -3720 2409 2114 22 0 0 0 chr12 55382303 55382325 -88404130 + AT_rich Low_complexity Low_complexity 1 22 0 582 284 76 32 chr12 55382625 55383210 -88403245 - L1MEd LINE L1 -861 1629 955 1628 156 0 7 chr12 55383216 55383485 -88402970 - AluSx SINE Alu -3 309 43 289 286 115 44 chr12 55383516 55383698 -88402757 - L1ME3A LINE L1 -14 6156 5962 1997 160 0 19 chr12 55383778 55384096 -88402359 - AluJb SINE Alu 0 312 1 988 282 30 38 chr12 55384100 55384347 -88402108 - L1ME3A LINE L1 -232 5938 5691 1942 154 91 11 chr12 55384347 55384711 -88401744 - MSTD LTR MaLR -3 393 1 988 282 30 38 chr12 55384711 55384966 -88401489 - L1ME3A LINE L1 -479 5691 5440 249 145 65 32 chr12 55385385 55385447 -88401008 + LTR33A LTR ERVL 460 523 0 383 248 58 0 chr12 55385456 55385593 -88400862 - HsTC2 DNA Tc2 -5 1893 1749 279 0 0 0 chr12 55385593 55385624 -88400831 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 735 234 0 0 chr12 55385633 55385770 -88400685 - FRAM SINE Alu -39 137 1 28 0 0 0 chr12 55385803 55385831 -88400624 + AT_rich Low_complexity Low_complexity 1 28 0 732 264 79 58 chr12 55385883 55386160 -88400295 - L1MEd LINE L1 -5835 284 2 374 338 7 7 chr12 55386170 55386315 -88400140 - MIR SINE MIR -101 161 17 1251 97 0 36 chr12 55387151 55387347 -88399108 + L1PA8 LINE L1 5983 6171 -1 420 20 0 0 chr12 55387970 55388019 -88398436 + (TG)n Simple_repeat Simple_repeat 2 50 0 648 253 125 49 chr12 55391675 55392019 -88394436 - MLT1J2 LTR MaLR -33 417 48 246 95 0 0 chr12 55393696 55393738 -88392717 + (A)n Simple_repeat Simple_repeat 1 42 0 216 0 0 0 chr12 55394671 55394695 -88391760 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 200 222 0 0 chr12 55395002 55395038 -88391417 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr12 55397189 55397211 -88389244 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 55401497 55401518 -88384937 + GC_rich Low_complexity Low_complexity 1 21 0 242 242 21 53 chr12 55404422 55404517 -88381938 + GA-rich Low_complexity Low_complexity 3 94 0 197 125 0 21 chr12 55404645 55404693 -88381762 + (CGG)n Simple_repeat Simple_repeat 3 49 0 22 88 0 0 chr12 55405332 55405389 -88381066 + GC_rich Low_complexity Low_complexity 1 57 0 288 0 0 0 chr12 55407237 55407269 -88379186 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 55407827 55407864 -88378591 + (T)n Simple_repeat Simple_repeat 1 37 0 289 316 0 0 chr12 55407864 55407959 -88378496 + GA-rich Low_complexity Low_complexity 1 95 0 321 246 192 15 chr12 55408795 55408925 -88377530 + MIR SINE MIR 36 188 -74 186 103 0 0 chr12 55408925 55408954 -88377501 + (CAA)n Simple_repeat Simple_repeat 2 30 0 863 138 119 46 chr12 55410291 55410509 -88375946 - MER96B DNA MER1_type? -183 234 1 26 0 0 0 chr12 55413049 55413075 -88373380 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr12 55413158 55413186 -88373269 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 55413230 55413269 -88373186 + (CA)n Simple_repeat Simple_repeat 1 39 0 197 193 0 35 chr12 55413799 55413815 -88372640 + GA-rich Low_complexity Low_complexity 1 16 -39 1856 130 49 42 chr12 55413815 55414123 -88372332 + AluSx SINE Alu 1 310 -2 197 193 0 35 chr12 55414123 55414163 -88372292 + GA-rich Low_complexity Low_complexity 16 55 0 242 54 0 27 chr12 55421025 55421062 -88365393 + (CGG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chr12 55424592 55424623 -88361832 + AT_rich Low_complexity Low_complexity 1 31 0 194 271 7 19 chr12 55431366 55431521 -88354934 + GA-rich Low_complexity Low_complexity 2 154 0 232 207 0 52 chr12 55431878 55431936 -88354519 + CT-rich Low_complexity Low_complexity 1 55 0 188 119 0 48 chr12 55439630 55439672 -88346783 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 314 286 31 0 chr12 55439972 55440070 -88346385 + G-rich Low_complexity Low_complexity 1 101 0 34 0 0 0 chr12 55441123 55441157 -88345298 + AT_rich Low_complexity Low_complexity 1 34 0 186 43 0 0 chr12 55445305 55445328 -88341127 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr12 55445328 55445374 -88341081 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 297 53 76 chr12 55446118 55446429 -88340026 + L1M4 LINE L1 982 3347 -1187 23 0 0 0 chr12 55447184 55447207 -88339248 + AT_rich Low_complexity Low_complexity 1 23 0 215 283 0 0 chr12 55450437 55450490 -88335965 + CT-rich Low_complexity Low_complexity 2 54 0 216 0 0 0 chr12 55450538 55450562 -88335893 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 218 173 19 39 chr12 55450810 55450862 -88335593 + C-rich Low_complexity Low_complexity 2 52 0 213 213 0 21 chr12 55455127 55455174 -88331281 + C-rich Low_complexity Low_complexity 4 49 0 21 0 0 0 chr12 55460203 55460224 -88326231 + GC_rich Low_complexity Low_complexity 1 21 0 290 109 36 0 chr12 55460457 55460512 -88325943 + GA-rich Low_complexity Low_complexity 3 59 0 226 238 12 50 chr12 55461620 55461700 -88324755 + GA-rich Low_complexity Low_complexity 4 80 0 264 261 0 0 chr12 55465147 55465212 -88321243 + CT-rich Low_complexity Low_complexity 3 67 0 237 33 0 0 chr12 55467102 55467132 -88319323 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 277 0 0 chr12 55467693 55467740 -88318715 + G-rich Low_complexity Low_complexity 2 48 0 251 154 0 19 chr12 55469592 55469644 -88316811 + GA-rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr12 55471893 55471921 -88314534 + GC_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 55474427 55474460 -88311995 + C-rich Low_complexity Low_complexity 2 34 0 522 0 0 0 chr12 55474499 55474557 -88311898 + (TC)n Simple_repeat Simple_repeat 1 58 0 294 0 0 61 chr12 55474697 55474746 -88311709 + (CCG)n Simple_repeat Simple_repeat 2 47 0 201 71 143 0 chr12 55474802 55474844 -88311611 + (CAGCC)n Simple_repeat Simple_repeat 4 51 0 219 242 0 0 chr12 55476979 55477041 -88309414 + GA-rich Low_complexity Low_complexity 2 63 0 283 230 0 27 chr12 55477527 55477601 -88308854 + A-rich Low_complexity Low_complexity 2 73 0 243 0 0 0 chr12 55477604 55477631 -88308824 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 342 259 24 102 chr12 55477873 55478039 -88308416 + L1 LINE L1 3015 3167 -2979 25 51 0 0 chr12 55478281 55478320 -88308135 + AT_rich Low_complexity Low_complexity 1 39 0 586 34 8 60 chr12 55479607 55479724 -88306731 + (TTCTC)n Simple_repeat Simple_repeat 5 115 0 198 0 0 0 chr12 55482028 55482050 -88304405 + (A)n Simple_repeat Simple_repeat 1 22 0 182 37 37 0 chr12 55482308 55482335 -88304120 + (TGGGGG)n Simple_repeat Simple_repeat 4 31 0 23 54 0 0 chr12 55482633 55482670 -88303785 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 55482930 55482964 -88303491 + AT_rich Low_complexity Low_complexity 1 34 0 252 149 0 0 chr12 55483025 55483072 -88303383 + (GA)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr12 55489681 55489710 -88296745 + AT_rich Low_complexity Low_complexity 1 29 0 183 184 0 0 chr12 55493226 55493264 -88293191 + CT-rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr12 55493916 55493941 -88292514 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr12 55495070 55495095 -88291360 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 55496390 55496410 -88290045 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 243 263 18 0 chr12 55498467 55498524 -88287931 + CT-rich Low_complexity Low_complexity 2 59 0 225 316 127 0 chr12 55500601 55500680 -88285775 + L2 LINE L2 3183 3271 -1 26 50 0 0 chr12 55500879 55500919 -88285536 + AT_rich Low_complexity Low_complexity 1 40 0 1788 151 3 43 chr12 55501554 55501879 -88284576 - AluJo SINE Alu 0 312 1 2117 111 0 3 chr12 55502775 55503072 -88283383 - AluSx SINE Alu -16 296 1 1245 159 9 0 chr12 55503267 55503481 -88282974 - AluJb SINE Alu -10 302 87 828 144 7 14 chr12 55503482 55503621 -88282834 - AluJo SINE Alu -174 138 1 186 346 105 33 chr12 55503713 55503866 -88282589 + L3b LINE CR1 1219 1382 -201 1782 155 0 4 chr12 55503872 55504174 -88282281 - AluJb SINE Alu 0 307 7 313 244 96 35 chr12 55504280 55504395 -88282060 + 7SK RNA RNA 4 125 -68 1278 135 5 19 chr12 55508036 55508251 -88278204 + AluSc SINE Alu 97 308 -1 219 249 211 38 chr12 55508486 55508699 -88277756 + L3b LINE CR1 1214 1463 -120 749 133 0 0 chr12 55509392 55509497 -88276958 - FRAM SINE Alu -13 163 59 367 181 0 21 chr12 55510291 55510385 -88276070 + CT-rich Low_complexity Low_complexity 1 92 0 763 219 13 7 chr12 55510385 55510536 -88275919 - FRAM SINE Alu -12 164 13 965 223 32 14 chr12 55510552 55510830 -88275625 - AluSx SINE Alu -19 293 11 679 180 0 55 chr12 55511019 55511219 -88275236 - L1PA16 LINE L1 -174 5992 5804 182 338 130 26 chr12 55512286 55512440 -88274015 + MIR3 SINE MIR 38 207 -1 2294 83 0 0 chr12 55512641 55512943 -88273512 - AluY SINE Alu -9 302 1 21 0 0 0 chr12 55514188 55514209 -88272246 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr12 55516142 55516177 -88270278 + (TG)n Simple_repeat Simple_repeat 1 35 0 2786 16 0 0 chr12 55516319 55516633 -88269822 + AluYb8 SINE Alu 1 314 -4 275 312 167 0 chr12 55518012 55518150 -88268305 + L3b LINE CR1 1303 1463 -120 405 341 121 6 chr12 55518386 55518559 -88267896 + MIR SINE MIR 10 202 -60 389 210 43 29 chr12 55519043 55519181 -88267274 - L1MC4 LINE L1 -1 8041 7902 870 217 40 59 chr12 55519216 55519246 -88267209 - L1MC4 LINE L1 -310 7732 7703 1791 139 0 10 chr12 55519246 55519534 -88266921 - AluJb SINE Alu -21 291 7 870 217 40 59 chr12 55519534 55519775 -88266680 - L1MC4 LINE L1 -339 7703 7466 441 295 9 0 chr12 55519807 55519919 -88266536 + L2 LINE L2 3201 3313 0 736 257 146 54 chr12 55521219 55521363 -88265092 + L2 LINE L2 2749 2878 -435 4100 162 4 28 chr12 55521363 55522045 -88264410 + L1MB3 LINE L1 5440 6137 -46 2106 106 0 3 chr12 55522045 55522338 -88264117 - AluSc SINE Alu -17 292 1 1761 152 20 3 chr12 55522346 55522642 -88263813 - AluJb SINE Alu -11 301 1 4100 162 4 28 chr12 55522642 55522710 -88263745 + L1MB3 LINE L1 6144 6181 -2 736 257 146 54 chr12 55522710 55522917 -88263538 + L2 LINE L2 2878 3065 -248 2446 57 0 3 chr12 55522917 55523216 -88263239 - AluY SINE Alu -13 298 1 736 257 146 54 chr12 55523216 55523374 -88263081 + L2 LINE L2 3065 3313 0 192 77 0 0 chr12 55523729 55523755 -88262700 + (T)n Simple_repeat Simple_repeat 1 26 0 195 188 0 0 chr12 55525345 55525393 -88261062 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 988 248 45 76 chr12 55525579 55526229 -88260226 - L2 LINE L2 0 3313 2687 653 306 142 17 chr12 55526272 55526631 -88259824 - L1ME2 LINE L1 -238 5926 5523 549 324 49 0 chr12 55526631 55526816 -88259639 - MIR SINE MIR -62 200 7 691 295 91 8 chr12 55527044 55527285 -88259170 + MIR SINE MIR 2 262 0 2019 129 7 3 chr12 55527311 55527620 -88258835 - AluSx SINE Alu -2 310 1 591 263 46 7 chr12 55527893 55528045 -88258410 - MIR SINE MIR -16 246 89 1167 111 0 0 chr12 55528047 55528251 -88258204 + AluSg/x SINE Alu 130 333 0 416 299 19 0 chr12 55528254 55528361 -88258094 - MIR SINE MIR -152 110 2 349 331 58 44 chr12 55528963 55529402 -88257053 - L2 LINE L2 -109 3163 2664 232 298 99 116 chr12 55530907 55531391 -88255064 - L2 LINE L2 -8 3305 2830 655 314 11 0 chr12 55531515 55531700 -88254755 + MIR3 SINE MIR 13 199 -9 273 109 0 0 chr12 55532101 55532147 -88254308 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1997 135 0 0 chr12 55532151 55532448 -88254007 + AluSx SINE Alu 1 297 -15 612 182 0 18 chr12 55532547 55532657 -88253798 - MER5A DNA MER1_type 0 189 82 2103 119 0 3 chr12 55532688 55532998 -88253457 - AluSq SINE Alu -4 309 1 800 197 0 0 chr12 55533017 55533149 -88253306 - FLAM_C SINE Alu -10 133 2 213 292 193 12 chr12 55533276 55533437 -88253018 - L2 LINE L2 0 3313 3124 187 264 88 44 chr12 55533604 55533695 -88252760 - L2 LINE L2 0 3272 3178 418 258 203 0 chr12 55534274 55534402 -88252053 - MIR3 SINE MIR -21 187 34 2240 91 3 0 chr12 55534794 55535092 -88251363 - AluSp SINE Alu -14 299 1 308 176 0 0 chr12 55536002 55536053 -88250402 - L2 LINE L2 0 3313 3263 1978 108 11 0 chr12 55536111 55536429 -88250026 - AluSx SINE Alu 0 321 1 487 238 54 7 chr12 55536821 55536968 -88249487 + MER103 DNA DNA 11 164 -2 568 323 30 6 chr12 55537047 55537214 -88249241 + MIR3 SINE MIR 16 186 -22 312 27 0 0 chr12 55537941 55537978 -88248477 + (TG)n Simple_repeat Simple_repeat 2 38 0 304 295 0 51 chr12 55538229 55538385 -88248070 + C-rich Low_complexity Low_complexity 1 148 0 286 278 28 33 chr12 55538331 55538511 -88247944 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 * 213 138 53 75 chr12 55538466 55538560 -88247895 + (CCCTG)n Simple_repeat Simple_repeat 4 95 0 * 2147 125 0 3 chr12 55539761 55540064 -88246391 + AluSx SINE Alu 1 302 -10 2191 107 0 14 chr12 55540128 55540417 -88246038 + AluSg SINE Alu 1 285 -25 242 130 0 0 chr12 55540441 55540487 -88245968 - LTR66 LTR ERVL -171 439 394 22 0 0 0 chr12 55540487 55540509 -88245946 + AT_rich Low_complexity Low_complexity 1 22 0 331 160 15 76 chr12 55540556 55540687 -88245768 + (CCCCG)n Simple_repeat Simple_repeat 4 126 0 52 30 0 0 chr12 55540703 55540769 -88245686 + GC_rich Low_complexity Low_complexity 1 66 0 215 161 65 24 chr12 55540775 55540899 -88245556 + (CCGCG)n Simple_repeat Simple_repeat 4 132 0 * 306 206 19 32 chr12 55540817 55540972 -88245483 + C-rich Low_complexity Low_complexity 6 158 0 22 0 0 0 chr12 55540972 55540994 -88245461 + GC_rich Low_complexity Low_complexity 1 22 0 225 155 0 0 chr12 55540994 55541052 -88245403 + C-rich Low_complexity Low_complexity 1 58 0 6467 23 3 7 chr12 55543207 55543960 -88242495 - L1PA4 LINE L1 0 6155 5406 1141 252 94 28 chr12 55543961 55544524 -88241931 + L1ME4a LINE L1 5518 6117 -4 2403 98 0 7 chr12 55544586 55544893 -88241562 + AluSc SINE Alu 1 305 -4 1448 177 12 87 chr12 55545671 55545789 -88240666 + AluJo SINE Alu 1 126 -186 2340 109 3 0 chr12 55545789 55546101 -88240354 - AluSp SINE Alu 0 313 1 1448 177 12 87 chr12 55546101 55546304 -88240151 + AluJo SINE Alu 126 298 -14 2419 82 0 0 chr12 55546468 55546761 -88239694 - AluSx SINE Alu -17 295 3 2153 136 0 0 chr12 55546929 55547230 -88239225 + AluSx SINE Alu 1 301 -11 1939 138 10 10 chr12 55547479 55547776 -88238679 - AluJo SINE Alu -15 297 1 1817 125 61 0 chr12 55547837 55548124 -88238331 + AluSc SINE Alu 1 303 0 604 195 38 88 chr12 55548153 55548238 -88238217 + MER58 DNA MER1_type 4 79 -262 1989 158 0 10 chr12 55548238 55548542 -88237913 - AluSx SINE Alu -11 301 1 604 195 38 88 chr12 55548542 55548615 -88237840 + MER58 DNA MER1_type 79 154 -187 2145 127 0 0 chr12 55548624 55548923 -88237532 - AluSx SINE Alu -12 300 2 2054 105 45 3 chr12 55548930 55549216 -88237239 - AluSc SINE Alu -7 302 5 252 226 161 16 chr12 55549253 55549315 -88237140 + Charlie1 DNA MER1_type 4 74 -2687 1317 199 10 14 chr12 55549375 55549666 -88236789 + AluSx SINE Alu 6 295 -17 2144 138 163 37 chr12 55549724 55550170 -88236285 + Charlie1 DNA MER1_type 2189 2708 -53 1833 173 0 20 chr12 55550170 55550476 -88235979 - AluJo SINE Alu -12 300 1 2144 138 163 37 chr12 55550476 55550538 -88235917 + Charlie1 DNA MER1_type 2708 2761 0 2182 126 7 0 chr12 55551448 55551750 -88234705 + AluSq SINE Alu 1 304 -9 2543 77 0 3 chr12 55551751 55552063 -88234392 + AluY SINE Alu 1 311 0 1563 156 13 57 chr12 55552241 55552542 -88233913 + AluJo SINE Alu 1 288 -24 1001 175 0 0 chr12 55552883 55553043 -88233412 - AluJb SINE Alu -23 289 130 2027 144 0 0 chr12 55553047 55553338 -88233117 - AluSx SINE Alu -21 291 1 1021 99 0 0 chr12 55553618 55553749 -88232706 - AluSg/x SINE Alu -24 288 158 40 0 0 0 chr12 55553975 55554015 -88232440 + AT_rich Low_complexity Low_complexity 1 40 0 228 145 32 48 chr12 55554163 55554225 -88232230 + AluSp/q SINE Alu 237 297 -6 460 187 0 0 chr12 55554243 55554318 -88232137 - AluJ/FLAM SINE Alu -220 92 18 3516 185 39 35 chr12 55554330 55554474 -88231981 - L1M4 LINE L1 -843 5303 5161 2282 60 57 3 chr12 55554474 55554756 -88231699 - AluY SINE Alu -14 297 1 3516 185 39 35 chr12 55554756 55555455 -88231000 - L1M4 LINE L1 -985 5161 4457 964 196 48 61 chr12 55555462 55555773 -88230682 - AluJo SINE Alu 0 312 6 245 196 0 0 chr12 55555779 55555835 -88230620 - L1M4 LINE L1 -1676 4470 4415 1070 160 34 0 chr12 55555835 55556010 -88230445 - AluJo SINE Alu -12 300 120 912 225 11 5 chr12 55556018 55556209 -88230246 - AluJo SINE Alu -119 193 2 2077 181 31 21 chr12 55556210 55556641 -88229814 - L1M4 LINE L1 -2094 4052 3614 1935 158 0 16 chr12 55556641 55556952 -88229503 - AluJb SINE Alu -6 306 1 2077 181 31 21 chr12 55556952 55556996 -88229459 - L1M4 LINE L1 -2532 3614 3572 1583 169 40 36 chr12 55556997 55557299 -88229156 + AluJo SINE Alu 1 303 -9 834 139 0 0 chr12 55557299 55557436 -88229019 + (GGGA)n Simple_repeat Simple_repeat 3 139 0 338 159 14 0 chr12 55557461 55557530 -88228925 + GA-rich Low_complexity Low_complexity 3 72 0 797 253 27 44 chr12 55557549 55557926 -88228529 - L1M4 LINE L1 -2560 3586 3220 1123 157 25 43 chr12 55558343 55558578 -88227877 - AluJo SINE Alu -11 301 71 418 247 11 0 chr12 55558582 55558671 -88227784 + AluJ/FLAM SINE Alu 1 90 -212 2255 112 10 0 chr12 55559034 55559338 -88227117 - AluSx SINE Alu -5 307 1 773 142 0 0 chr12 55559351 55559464 -88226991 - FLAM_C SINE Alu -25 118 6 2357 105 3 0 chr12 55559847 55560152 -88226303 - AluSx SINE Alu -6 306 1 523 192 0 0 chr12 55560180 55560258 -88226197 + MER2 DNA MER2_type 268 345 0 263 333 160 14 chr12 55560265 55560478 -88225977 + L2 LINE L2 2406 2649 -665 1527 167 19 51 chr12 55560523 55560707 -88225748 - AluJo SINE Alu -11 301 130 2144 95 7 7 chr12 55560707 55561001 -88225454 + AluSg SINE Alu 1 294 -16 1527 167 19 51 chr12 55561001 55561127 -88225328 - AluJo SINE Alu -182 130 1 2246 111 0 3 chr12 55562023 55562320 -88224135 - AluSx SINE Alu -16 296 1 2188 116 0 0 chr12 55562347 55562649 -88223806 - AluY SINE Alu -9 302 1 21 0 0 0 chr12 55563894 55563915 -88222540 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr12 55565847 55565885 -88220570 + (TG)n Simple_repeat Simple_repeat 2 39 0 2927 16 0 0 chr12 55566023 55566337 -88220118 + AluYb8 SINE Alu 1 314 -4 224 313 148 0 chr12 55567715 55567843 -88218612 + L3b LINE CR1 1303 1449 -134 341 341 121 6 chr12 55568089 55568262 -88218193 + MIR SINE MIR 10 202 -60 402 210 43 29 chr12 55568746 55568884 -88217571 - L1MC4 LINE L1 -1 8041 7902 882 217 40 59 chr12 55568919 55568949 -88217506 - L1MC4 LINE L1 -310 7732 7703 1909 139 0 10 chr12 55568949 55569237 -88217218 - AluJb SINE Alu -21 291 7 882 217 40 59 chr12 55569237 55569478 -88216977 - L1MC4 LINE L1 -339 7703 7466 395 278 46 0 chr12 55569510 55569618 -88216837 + L2 LINE L2 3201 3313 0 570 248 151 59 chr12 55570922 55571066 -88215389 + L2 LINE L2 2749 2878 -435 4137 162 4 28 chr12 55571066 55571748 -88214707 + L1MB3 LINE L1 5440 6137 -46 2232 106 0 3 chr12 55571748 55572041 -88214414 - AluSc SINE Alu -17 292 1 1846 152 20 7 chr12 55572049 55572346 -88214109 - AluJb SINE Alu -11 301 1 4137 162 4 28 chr12 55572346 55572414 -88214041 + L1MB3 LINE L1 6144 6181 -2 570 248 151 59 chr12 55572414 55572621 -88213834 + L2 LINE L2 2878 3065 -248 2582 57 0 3 chr12 55572621 55572920 -88213535 - AluY SINE Alu -13 298 1 570 248 151 59 chr12 55572920 55573078 -88213377 + L2 LINE L2 3065 3313 0 192 77 0 0 chr12 55573433 55573459 -88212996 + (T)n Simple_repeat Simple_repeat 1 26 0 195 188 0 0 chr12 55575049 55575097 -88211358 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 887 248 45 76 chr12 55575283 55575933 -88210522 - L2 LINE L2 0 3313 2687 652 334 124 3 chr12 55575956 55576336 -88210119 - L1ME3A LINE L1 -223 5947 5522 486 328 51 0 chr12 55576343 55576520 -88209935 - MIR SINE MIR -70 192 7 699 295 91 8 chr12 55576748 55576989 -88209466 + MIR SINE MIR 2 262 0 2140 129 7 3 chr12 55577015 55577324 -88209131 - AluSx SINE Alu -2 310 1 529 263 46 7 chr12 55577597 55577749 -88208706 - MIR SINE MIR -16 246 89 1238 111 0 0 chr12 55577751 55577955 -88208500 + AluSg/x SINE Alu 128 331 0 376 299 19 0 chr12 55577958 55578065 -88208390 - MIR SINE MIR -152 110 2 291 338 26 46 chr12 55578667 55579083 -88207372 - L2 LINE L2 -109 3163 2695 231 315 153 9 chr12 55580614 55580725 -88205730 - L2 LINE L2 -8 3305 3179 590 311 11 0 chr12 55581227 55581407 -88205048 + MIR3 SINE MIR 18 199 -9 273 109 0 0 chr12 55581808 55581854 -88204601 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2122 135 0 0 chr12 55581858 55582155 -88204300 + AluSx SINE Alu 1 297 -15 1026 126 0 135 chr12 55582254 55582395 -88204060 - MER5A DNA MER1_type 0 189 85 2276 110 0 3 chr12 55582395 55582705 -88203750 - AluSq SINE Alu -4 309 1 1026 126 0 135 chr12 55582705 55582778 -88203677 - MER5A DNA MER1_type -104 85 4 250 279 93 14 chr12 55582885 55583025 -88203430 + L2 LINE L2 3159 3309 -4 564 196 159 31 chr12 55584273 55584436 -88202019 + MER5A DNA MER1_type 4 187 -2 1560 124 6 158 chr12 55585703 55586058 -88200397 - AluJb SINE Alu 0 302 2 249 33 0 0 chr12 55586064 55586094 -88200361 + (TA)n Simple_repeat Simple_repeat 2 31 0 2088 115 0 36 chr12 55586096 55586400 -88200055 - AluSx SINE Alu -19 293 1 761 236 131 0 chr12 55586447 55586676 -88199779 - MIR SINE MIR -1 261 3 393 350 89 35 chr12 55588313 55588627 -88197828 + L2 LINE L2 2933 3263 -9 2309 63 0 28 chr12 55588629 55588946 -88197509 + AluY SINE Alu 1 308 -3 1998 89 11 7 chr12 55589040 55589343 -88197112 + AluSc SINE Alu 1 304 0 226 236 137 75 chr12 55589690 55589851 -88196604 - L2 LINE L2 -105 3208 3038 218 336 39 10 chr12 55592242 55592346 -88194109 + L3b LINE CR1 1321 1427 -156 247 264 116 70 chr12 55592803 55592932 -88193523 - MIR SINE MIR -1 261 127 197 258 81 32 chr12 55595081 55595143 -88191312 - L2 LINE L2 -1 3271 3207 191 297 198 18 chr12 55595545 55595656 -88190799 + L3 LINE CR1 1399 1529 -48 2609 129 54 10 chr12 55597572 55597982 -88188473 - MSTB1 LTR MaLR -4 428 1 308 222 256 43 chr12 55598046 55598141 -88188314 - MIR SINE MIR -10 252 178 2159 107 7 0 chr12 55598141 55598450 -88188005 + AluSx SINE Alu 1 311 -1 308 222 256 43 chr12 55598450 55598561 -88187894 - MIR SINE MIR -84 178 2 276 30 0 0 chr12 55598715 55598748 -88187707 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 237 51 68 chr12 55599054 55599113 -88187342 + L2 LINE L2 3255 3312 -1 221 336 70 89 chr12 55599159 55599787 -88186668 - L2 LINE L2 -544 2770 2155 2049 86 22 0 chr12 55601564 55601842 -88184613 + AluSq SINE Alu 22 305 -8 215 214 0 0 chr12 55603048 55603090 -88183365 + CT-rich Low_complexity Low_complexity 1 42 0 345 315 41 34 chr12 55603093 55603239 -88183216 - L2 LINE L2 -5 3267 3121 1184 155 25 0 chr12 55605148 55605348 -88181107 - L1MB3 LINE L1 -2 6181 5977 569 258 168 0 chr12 55605871 55606026 -88180429 + MER5A DNA MER1_type 9 189 0 187 296 0 0 chr12 55607554 55607598 -88178857 + L2 LINE L2 3136 3179 -93 508 286 175 18 chr12 55608757 55608974 -88177481 + MIR SINE MIR 12 262 0 1068 84 14 17 chr12 55610152 55610438 -88176017 + (TTTC)n Simple_repeat Simple_repeat 1 285 0 1497 201 10 14 chr12 55610438 55610912 -88175543 - AluJo SINE Alu 0 476 4 32 0 0 0 chr12 55612714 55612746 -88173709 + AT_rich Low_complexity Low_complexity 1 32 0 2021 118 0 3 chr12 55612746 55613034 -88173421 - AluSx SINE Alu -25 287 1 1245 159 9 0 chr12 55613228 55613442 -88173013 - AluJb SINE Alu -10 302 87 828 144 7 14 chr12 55613443 55613582 -88172873 - AluJo SINE Alu -174 138 1 186 346 105 33 chr12 55613674 55613827 -88172628 + L3b LINE CR1 1219 1382 -201 1782 155 0 4 chr12 55613833 55614135 -88172320 - AluJb SINE Alu 0 307 7 308 241 78 26 chr12 55614241 55614357 -88172098 + 7SK RNA RNA 4 125 -68 1278 135 5 19 chr12 55617998 55618213 -88168242 + AluSc SINE Alu 97 308 -1 219 249 211 38 chr12 55618448 55618661 -88167794 + L3b LINE CR1 1214 1463 -120 749 133 0 0 chr12 55619354 55619459 -88166996 - FRAM SINE Alu -13 163 59 433 179 0 19 chr12 55620253 55620359 -88166096 + CT-rich Low_complexity Low_complexity 1 104 0 1329 190 7 62 chr12 55620359 55620511 -88165944 - AluJo SINE Alu -24 288 160 2043 113 0 10 chr12 55620511 55620804 -88165651 - AluSx SINE Alu -22 290 1 1329 190 7 62 chr12 55620804 55620956 -88165499 - AluJo SINE Alu -152 160 1 213 292 193 12 chr12 55621082 55621243 -88165212 - L2 LINE L2 0 3313 3124 187 264 88 44 chr12 55621410 55621501 -88164954 - L2 LINE L2 0 3272 3178 418 258 203 0 chr12 55622080 55622208 -88164247 - MIR3 SINE MIR -21 187 34 2240 91 3 0 chr12 55622600 55622898 -88163557 - AluSp SINE Alu -14 299 1 308 176 0 0 chr12 55623808 55623859 -88162596 - L2 LINE L2 0 3313 3263 1978 108 11 0 chr12 55623917 55624235 -88162220 - AluSx SINE Alu 0 321 1 487 238 54 7 chr12 55624627 55624774 -88161681 + MER103 DNA DNA 11 164 -2 568 323 30 6 chr12 55624853 55625020 -88161435 + MIR3 SINE MIR 16 186 -22 312 27 0 0 chr12 55625793 55625811 -88160644 + (TG)n Simple_repeat Simple_repeat 1 55 0 312 27 0 0 chr12 55625811 55625848 -88160607 + (TG)n Simple_repeat Simple_repeat 2 38 0 235 171 0 0 chr12 55626221 55626262 -88160193 - L2 LINE L2 -8 3305 3265 2134 107 0 3 chr12 55626390 55626688 -88159767 - AluSg SINE Alu -13 297 1 550 178 15 84 chr12 55627597 55627802 -88158653 - L1M2 LINE L1 -799 5443 5256 237 277 92 0 chr12 55627910 55627975 -88158480 - L2 LINE L2 -1 3312 3242 * 569 286 28 22 chr12 55627974 55628152 -88158303 + L2 LINE L2 2531 2709 -605 715 161 0 8 chr12 55628152 55628270 -88158185 + FRAM SINE Alu 58 174 -2 1337 223 106 17 chr12 55628344 55628596 -88157859 + L2 LINE L2 2873 3176 -137 1805 114 21 18 chr12 55628596 55628915 -88157540 - AluSq SINE Alu 0 313 11 1337 223 106 17 chr12 55628915 55629066 -88157389 + L2 LINE L2 3176 3312 -1 911 327 75 59 chr12 55629068 55629854 -88156601 - L2 LINE L2 -75 3197 2412 2263 94 0 0 chr12 55630286 55630584 -88155871 + AluSx SINE Alu 1 298 -14 860 250 125 31 chr12 55630850 55631335 -88155120 - MER115 DNA AcHobo -3 690 118 473 323 141 15 chr12 55631416 55631614 -88154841 + MIR SINE MIR 19 241 -21 29 0 0 0 chr12 55632057 55632086 -88154369 + AT_rich Low_complexity Low_complexity 1 29 0 2076 125 0 0 chr12 55632088 55632383 -88154072 - AluSx SINE Alu -17 295 1 1552 165 49 18 chr12 55632387 55632672 -88153783 - AluSx SINE Alu -18 294 1 521 192 0 0 chr12 55632700 55632778 -88153677 + MER2 DNA MER2_type 268 345 0 332 333 160 14 chr12 55632785 55632998 -88153457 + L2 LINE L2 2406 2649 -665 557 237 7 44 chr12 55633001 55633043 -88153412 + L2 LINE L2 3184 3226 -87 1409 168 19 48 chr12 55633043 55633226 -88153229 - AluJo SINE Alu -11 301 129 2064 95 3 7 chr12 55633226 55633521 -88152934 + AluSg SINE Alu 1 294 -16 1409 168 19 48 chr12 55633521 55633647 -88152808 - AluJo SINE Alu -183 129 1 557 237 7 44 chr12 55633647 55633739 -88152716 + L2 LINE L2 3226 3313 0 1686 85 9 0 chr12 55634141 55634365 -88152090 + AluSg/x SINE Alu 85 310 -2 279 294 145 67 chr12 55634521 55634776 -88151679 - L2 LINE L2 -1 3271 2997 180 327 82 45 chr12 55635111 55635221 -88151234 - MIR SINE MIR -69 139 26 206 283 0 0 chr12 55635898 55635944 -88150511 + G-rich Low_complexity Low_complexity 4 49 0 201 211 0 0 chr12 55637784 55637836 -88148619 + (TG)n Simple_repeat Simple_repeat 2 53 0 667 128 80 16 chr12 55639426 55639551 -88146904 + AluSc SINE Alu 130 262 -47 208 321 155 48 chr12 55642618 55642908 -88143547 + L2 LINE L2 2316 2636 -678 1747 157 0 20 chr12 55642974 55643274 -88143181 - AluJo SINE Alu -18 294 1 2234 87 3 10 chr12 55643647 55643958 -88142497 + AluSq SINE Alu 1 309 -4 25 31 0 0 chr12 55644296 55644328 -88142127 + AT_rich Low_complexity Low_complexity 1 32 0 1870 157 0 3 chr12 55644444 55644737 -88141718 - AluJo SINE Alu -20 292 1 2177 118 0 0 chr12 55644748 55645054 -88141401 - AluSx SINE Alu -5 307 2 276 154 0 0 chr12 55645304 55645356 -88141099 + (TG)n Simple_repeat Simple_repeat 1 52 0 5479 145 22 55 chr12 55646608 55646864 -88139591 - L1MC1 LINE L1 0 6333 6070 1814 152 0 11 chr12 55646864 55647147 -88139308 + AluJb SINE Alu 1 280 -32 5479 145 22 55 chr12 55647147 55647868 -88138587 - L1MC1 LINE L1 -263 6070 5444 2026 96 0 7 chr12 55647868 55648148 -88138307 + AluSx SINE Alu 11 288 -24 5479 145 22 55 chr12 55648148 55648502 -88137953 - L1MC1 LINE L1 -889 5444 5080 3313 109 33 2 chr12 55648521 55648978 -88137477 - MER1A DNA MER1_type 0 529 59 1339 178 20 77 chr12 55648985 55649256 -88137199 - L1MC1 LINE L1 -1083 5063 4815 2217 71 3 23 chr12 55649256 55649564 -88136891 + AluY SINE Alu 1 302 -9 1339 178 20 77 chr12 55649564 55649641 -88136814 - L1MC1 LINE L1 -1331 4815 4735 776 165 0 0 chr12 55649664 55649785 -88136670 - FLAM_C SINE Alu -21 122 2 1501 83 0 46 chr12 55649795 55650013 -88136442 - AluSc SINE Alu -13 296 89 1465 196 70 11 chr12 55650014 55650299 -88136156 - AluJo SINE Alu 0 302 1 2502 235 30 13 chr12 55650306 55650996 -88135459 - L1MC1 LINE L1 -3009 3137 2436 2214 104 3 0 chr12 55651000 55651309 -88135146 - AluSx SINE Alu -2 310 1 1561 140 8 16 chr12 55651334 55651584 -88134871 + AluSx SINE Alu 1 248 -64 342 0 0 0 chr12 55651601 55651639 -88134816 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 402 48 32 63 chr12 55651663 55651726 -88134729 - AluY SINE Alu -25 287 227 424 314 23 23 chr12 55651978 55652153 -88134302 - L2 LINE L2 -575 2739 2565 1336 150 0 5 chr12 55653282 55653495 -88132960 + AluSx SINE Alu 1 212 -100 473 52 0 0 chr12 55653495 55653553 -88132902 + AluSq/x SINE Alu 78 135 -178 2248 95 0 3 chr12 55653553 55653859 -88132596 + AluY SINE Alu 2 306 -5 1227 156 44 100 chr12 55653869 55654019 -88132436 + AluSx SINE Alu 1 125 -187 233 0 62 0 chr12 55654019 55654051 -88132404 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1227 156 44 100 chr12 55654051 55654221 -88132234 + AluSx SINE Alu 125 303 -9 635 159 164 95 chr12 55654648 55654760 -88131695 - MER58C DNA MER1_type -2213 207 75 2221 79 10 0 chr12 55654760 55655051 -88131404 - AluSq SINE Alu -19 294 1 635 159 164 95 chr12 55655051 55655127 -88131328 - MER58C DNA MER1_type -2345 75 6 389 292 0 0 chr12 55655177 55655273 -88131182 + L1MC4 LINE L1 6609 6703 -1339 1979 131 17 0 chr12 55655666 55655957 -88130498 + AluSx SINE Alu 2 297 -15 2032 95 0 60 chr12 55656327 55656644 -88129811 - AluSg SINE Alu -12 298 1 1658 137 32 18 chr12 55656645 55656930 -88129525 - AluSx SINE Alu -22 290 2 1581 188 3 10 chr12 55657093 55657397 -88129058 - AluJo SINE Alu -10 302 1 2375 121 95 111 chr12 55657397 55657509 -88128946 - L1MCa LINE L1 -4574 1852 1740 1488 171 69 4 chr12 55657509 55657784 -88128671 - AluJo SINE Alu -8 304 12 2375 121 95 111 chr12 55657784 55658014 -88128441 - L1MCa LINE L1 -4686 1740 1508 189 0 0 0 chr12 55658014 55658035 -88128420 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2375 121 95 111 chr12 55658035 55658151 -88128304 - L1MCa LINE L1 -4918 1508 1392 2389 64 0 6 chr12 55658151 55658464 -88127991 - AluY SINE Alu 0 311 1 2375 121 95 111 chr12 55658464 55658623 -88127832 - L1MCa LINE L1 -5034 1392 1232 702 184 0 59 chr12 55658623 55658759 -88127696 - FLAM_A SINE Alu -5 128 1 2375 121 95 111 chr12 55658759 55658826 -88127629 - L1MCa LINE L1 -5194 1232 1165 1903 143 0 3 chr12 55658826 55659126 -88127329 - AluSx SINE Alu -13 299 1 2375 121 95 111 chr12 55659126 55659171 -88127284 - L1MCa LINE L1 -5261 1165 1038 234 0 0 0 chr12 55659171 55659197 -88127258 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1140 162 23 128 chr12 55659197 55659548 -88126907 - MLT1A1 LTR MaLR -51 314 1 2044 103 10 13 chr12 55660308 55660471 -88125984 - AluSx SINE Alu -13 299 136 2392 73 3 0 chr12 55660471 55660773 -88125682 - AluSp SINE Alu -10 303 1 2044 103 10 13 chr12 55660773 55660909 -88125546 - AluSx SINE Alu -176 136 1 195 74 0 0 chr12 55661237 55661264 -88125191 - L2 LINE L2 -619 2695 2669 792 163 85 0 chr12 55661493 55661634 -88124821 - MER21B LTR ERV1 -368 495 343 2998 151 58 25 chr12 55661647 55662211 -88124244 - L1MCa LINE L1 -5385 1041 459 1644 90 43 12 chr12 55662211 55662293 -88124162 - Tigger7 DNA MER2_type 0 2587 2509 1278 189 54 30 chr12 55662293 55662627 -88123828 - MER2 DNA MER2_type 0 344 3 1644 90 43 12 chr12 55662627 55662799 -88123656 - Tigger7 DNA MER2_type -78 2509 2325 803 157 0 21 chr12 55662799 55662815 -88123640 - FLAM_C SINE Alu -175 137 122 2239 98 3 0 chr12 55662815 55663112 -88123343 + AluSx SINE Alu 1 298 -14 803 157 0 21 chr12 55663112 55663235 -88123220 - FLAM_C SINE Alu -190 122 1 582 169 0 0 chr12 55663236 55663319 -88123136 - Tigger7 DNA MER2_type -256 83 1 2408 152 48 37 chr12 55663321 55663756 -88122699 - L1MCa LINE L1 -5968 458 19 369 218 16 48 chr12 55663779 55663815 -88122640 + MER112 DNA MER1_type 35 71 -189 2085 113 0 0 chr12 55663815 55664115 -88122340 - AluSx SINE Alu -12 300 1 369 218 16 48 chr12 55664115 55664202 -88122253 + MER112 DNA MER1_type 71 154 -106 842 158 0 15 chr12 55664246 55664379 -88122076 - FLAM_A SINE Alu -2 131 1 1296 208 203 42 chr12 55664527 55664945 -88121510 - MLT1D LTR MaLR 0 505 20 2035 151 164 3 chr12 55664945 55665119 -88121336 + MLT1C LTR MaLR 1 146 -321 399 41 0 0 chr12 55665119 55665168 -88121287 + (CA)n Simple_repeat Simple_repeat 2 50 0 2035 151 164 3 chr12 55665168 55665384 -88121071 + MLT1C LTR MaLR 146 454 -13 480 342 144 37 chr12 55665906 55665921 -88120534 - L2 LINE L2 -12 3260 3248 2128 105 0 13 chr12 55665921 55666227 -88120228 + AluSg SINE Alu 1 302 -8 480 342 144 37 chr12 55666227 55666594 -88119861 - L2 LINE L2 -24 3248 2837 1419 164 22 60 chr12 55666700 55667018 -88119437 - AluJo SINE Alu -6 306 1 231 114 0 0 chr12 55667462 55667497 -88118958 + (GA)n Simple_repeat Simple_repeat 1 35 0 2185 110 0 0 chr12 55668846 55669156 -88117299 + AluSg SINE Alu 1 310 0 313 296 148 7 chr12 55669176 55669311 -88117144 - MLT1L LTR MaLR -89 526 373 2590 105 17 8 chr12 55669694 55670055 -88116400 + THE1B LTR MaLR 1 364 0 1825 162 0 0 chr12 55670105 55670383 -88116072 + AluSx SINE Alu 1 278 -34 1513 124 22 4 chr12 55670897 55671123 -88115332 + MER30 DNA MER1_type 1 230 0 1837 154 3 3 chr12 55671519 55671805 -88114650 - AluSx SINE Alu -26 286 1 1525 160 24 21 chr12 55672277 55672565 -88113890 - AluJb SINE Alu -23 289 1 21 0 0 0 chr12 55672624 55672645 -88113810 + AT_rich Low_complexity Low_complexity 1 21 0 2159 72 28 10 chr12 55673250 55673541 -88112914 - AluSq SINE Alu -17 296 1 505 245 40 40 chr12 55673606 55673757 -88112698 - L2 LINE L2 -3 3310 3160 381 154 0 0 chr12 55674545 55674610 -88111845 - Alu SINE Alu 0 302 238 1492 184 14 0 chr12 55674677 55674960 -88111495 + AluJo SINE Alu 26 312 0 2228 87 6 16 chr12 55675673 55675984 -88110471 + AluSq SINE Alu 1 308 -5 390 201 90 69 chr12 55676073 55676191 -88110264 + L1ME3 LINE L1 6009 6132 -30 2168 114 0 0 chr12 55676191 55676498 -88109957 - AluSx SINE Alu -5 307 1 390 201 90 69 chr12 55676498 55676523 -88109932 + L1ME3 LINE L1 6132 6155 -7 855 127 8 22 chr12 55676530 55676664 -88109791 + FLAM_C SINE Alu 1 132 -1 893 117 0 29 chr12 55676758 55676895 -88109560 - FLAM_C SINE Alu 0 133 1 1194 189 33 0 chr12 55677523 55677735 -88108720 - MER20 DNA MER1_type 0 219 1 1632 142 60 41 chr12 55677841 55678158 -88108297 - MER33 DNA MER1_type -1 323 1 1779 173 0 3 chr12 55678392 55678698 -88107757 + AluJb SINE Alu 1 305 -7 777 176 0 16 chr12 55678838 55678963 -88107492 + FLAM_A SINE Alu 1 123 -10 448 182 10 10 chr12 55679278 55679377 -88107078 - AluSp/q SINE Alu -11 302 204 25 31 0 0 chr12 55679981 55680013 -88106442 + AT_rich Low_complexity Low_complexity 1 32 0 2234 87 3 10 chr12 55680351 55680662 -88105793 - AluSq SINE Alu -4 309 1 1747 157 0 20 chr12 55681035 55681335 -88105120 + AluJo SINE Alu 1 294 -18 208 321 155 48 chr12 55681401 55681691 -88104764 - L2 LINE L2 -678 2636 2316 667 128 80 16 chr12 55684759 55684884 -88101571 - AluSc SINE Alu -47 262 130 201 211 0 0 chr12 55686473 55686525 -88099930 + (CA)n Simple_repeat Simple_repeat 2 53 0 206 283 0 0 chr12 55688365 55688411 -88098044 + C-rich Low_complexity Low_complexity 4 49 0 181 327 82 45 chr12 55689088 55689198 -88097257 + MIR SINE MIR 26 139 -69 267 298 145 67 chr12 55689533 55689788 -88096667 + L2 LINE L2 2997 3271 -1 1801 85 9 0 chr12 55689944 55690168 -88096287 - AluSg/x SINE Alu -2 308 83 428 230 11 0 chr12 55690570 55690657 -88095798 - L2 LINE L2 0 3313 3226 774 175 0 0 chr12 55690662 55690788 -88095667 + FLAM_C SINE Alu 1 126 -7 2257 76 3 17 chr12 55690795 55691086 -88095369 - AluSg SINE Alu -23 287 1 484 147 0 32 chr12 55691086 55691181 -88095274 + MER33 DNA MER1_type 272 363 0 690 168 0 8 chr12 55691381 55691500 -88094955 + FLAM_C SINE Alu 1 118 -15 335 276 126 8 chr12 55691847 55691974 -88094481 + MIR SINE MIR 106 247 -15 408 333 23 8 chr12 55692054 55692183 -88094272 - L3 LINE CR1 -1 1576 1446 1969 140 27 7 chr12 55692537 55692830 -88093625 + AluJb SINE Alu 1 299 -13 753 231 172 5 chr12 55694458 55694661 -88091794 + MIR SINE MIR 20 256 -6 382 343 72 24 chr12 55695177 55695384 -88091071 + L3 LINE CR1 1335 1551 -26 208 269 0 26 chr12 55695840 55695918 -88090537 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 197 237 0 0 chr12 55696564 55696602 -88089853 + L2 LINE L2 3270 3307 -6 387 289 78 7 chr12 55696827 55696969 -88089486 + MIR SINE MIR 41 192 -70 813 168 102 0 chr12 55696976 55697187 -88089268 + AluJb SINE Alu 132 356 0 2147 90 0 87 chr12 55697432 55697592 -88088863 + AluSx SINE Alu 1 121 -191 351 0 0 0 chr12 55697592 55697631 -88088824 + (CA)n Simple_repeat Simple_repeat 2 40 0 2147 90 0 87 chr12 55697631 55697792 -88088663 + AluSx SINE Alu 121 294 -18 1214 77 0 6 chr12 55697804 55697985 -88088470 + (GAA)n Simple_repeat Simple_repeat 1 180 0 183 263 131 10 chr12 55699973 55700072 -88086383 - L3b LINE CR1 -177 1406 1296 21 36 0 0 chr12 55700403 55700431 -88086024 + GC_rich Low_complexity Low_complexity 1 28 0 373 108 0 68 chr12 55702349 55702423 -88084032 - Alu SINE Alu 0 300 232 23 0 0 0 chr12 55702821 55702844 -88083611 + AT_rich Low_complexity Low_complexity 1 23 0 183 269 75 30 chr12 55704189 55704256 -88082199 + MIR SINE MIR 35 104 -104 200 200 0 0 chr12 55705242 55705277 -88081178 + GA-rich Low_complexity Low_complexity 3 37 0 244 276 21 21 chr12 55706245 55706390 -88080065 + (CAGAGA)n Simple_repeat Simple_repeat 2 146 0 260 70 23 0 chr12 55706738 55706781 -88079674 + (TG)n Simple_repeat Simple_repeat 1 44 0 672 290 111 24 chr12 55707372 55707706 -88078749 - MARNA DNA Mariner -60 526 164 209 337 0 0 chr12 55708299 55708385 -88078070 + (TG)n Simple_repeat Simple_repeat 2 87 0 201 94 0 0 chr12 55708834 55708866 -88077589 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 86 0 0 chr12 55709471 55709529 -88076926 + GC_rich Low_complexity Low_complexity 1 58 0 244 336 7 14 chr12 55709634 55709777 -88076678 + CT-rich Low_complexity Low_complexity 1 142 0 186 43 0 0 chr12 55709937 55709960 -88076495 + (CCG)n Simple_repeat Simple_repeat 2 24 0 251 258 239 13 chr12 55710205 55710360 -88076095 + MIR SINE MIR 45 234 -28 342 0 0 0 chr12 55710835 55710873 -88075582 + (CA)n Simple_repeat Simple_repeat 1 38 0 468 35 0 0 chr12 55711448 55711506 -88074949 + (TG)n Simple_repeat Simple_repeat 2 59 0 201 191 175 0 chr12 55712045 55712108 -88074347 - MIR SINE MIR -108 154 81 539 278 88 5 chr12 55712217 55712409 -88074046 + MIR SINE MIR 15 221 -41 315 0 0 0 chr12 55713091 55713126 -88073329 + (TG)n Simple_repeat Simple_repeat 1 35 0 215 262 60 12 chr12 55713169 55713253 -88073202 - L3b LINE CR1 -174 1409 1322 394 257 44 87 chr12 55714140 55714203 -88072252 - MIR3 SINE MIR -2 206 142 785 131 0 36 chr12 55714203 55714340 -88072115 - FLAM_C SINE Alu -1 132 1 394 257 44 87 chr12 55714340 55714482 -88071973 - MIR3 SINE MIR -66 142 10 225 0 0 0 chr12 55714509 55714534 -88071921 + (TG)n Simple_repeat Simple_repeat 2 26 0 214 315 15 31 chr12 55716357 55716487 -88069968 + CT-rich Low_complexity Low_complexity 2 129 0 183 139 0 0 chr12 55716499 55716535 -88069920 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 302 317 17 20 chr12 55716684 55716875 -88069580 + CT-rich Low_complexity Low_complexity 1 190 0 193 255 0 0 chr12 55717372 55717419 -88069036 + L2 LINE L2 3208 3254 -18 2178 119 13 3 chr12 55718217 55718520 -88067935 - AluSx SINE Alu -6 306 1 2231 114 0 13 chr12 55718643 55718950 -88067505 + AluSx SINE Alu 1 303 -9 2187 127 0 0 chr12 55718957 55719256 -88067199 + AluSx SINE Alu 2 300 -12 608 221 40 27 chr12 55719265 55719338 -88067117 - MER58 DNA MER1_type -2266 154 83 2028 153 0 19 chr12 55719338 55719652 -88066803 + AluSx SINE Alu 1 308 -4 608 221 40 27 chr12 55719652 55719727 -88066728 - MER58 DNA MER1_type -2337 83 4 1842 118 65 0 chr12 55719756 55720042 -88066413 - AluSc SINE Alu 0 303 1 1910 142 17 10 chr12 55720103 55720398 -88066057 + AluJo SINE Alu 1 297 -15 2190 136 0 0 chr12 55720647 55720948 -88065507 - AluSx SINE Alu -11 301 1 2368 86 3 0 chr12 55721116 55721408 -88065047 + AluSx SINE Alu 3 295 -17 1044 173 20 50 chr12 55721572 55721774 -88064681 - AluJo SINE Alu -14 298 103 2163 126 7 0 chr12 55721775 55722076 -88064379 + AluSp SINE Alu 1 303 -10 1665 172 66 0 chr12 55722706 55723026 -88063429 - MER58B DNA MER1_type 0 341 1 416 269 95 61 chr12 55723248 55723512 -88062943 + L3 LINE CR1 1166 1438 -139 381 242 99 93 chr12 55725046 55725105 -88061350 + MIR SINE MIR 31 88 -174 887 184 12 18 chr12 55725105 55725273 -88061182 - FAM SINE Alu -8 167 1 381 242 99 93 chr12 55725273 55725374 -88061081 + MIR SINE MIR 88 192 -70 257 87 43 0 chr12 55725447 55725493 -88060962 + Alu SINE Alu 255 302 0 * 712 266 50 13 chr12 55725483 55725745 -88060710 - MER33 DNA MER1_type -67 257 1 207 289 0 0 chr12 55726506 55726558 -88059897 - MIR SINE MIR 0 262 211 1199 133 0 0 chr12 55726561 55726727 -88059728 - AluSg/x SINE Alu -10 300 135 557 200 89 15 chr12 55726736 55726871 -88059584 - MIR SINE MIR -71 191 47 216 286 29 0 chr12 55726928 55726998 -88059457 + L3 LINE CR1 1503 1574 -3 220 358 92 12 chr12 55730374 55730547 -88055908 - MIR SINE MIR -71 191 5 669 259 112 7 chr12 55731476 55731689 -88054766 - MIR SINE MIR -2 260 30 43 64 0 0 chr12 55731882 55731960 -88054495 + AT_rich Low_complexity Low_complexity 1 78 0 336 171 295 0 chr12 55732144 55732249 -88054206 + MER117 DNA MER1_type 34 169 -28 528 313 15 15 chr12 55732433 55732634 -88053821 + MLT1I LTR MaLR 183 383 -26 2251 120 3 0 chr12 55732659 55732988 -88053467 + AluSx SINE Alu 1 312 0 666 317 85 31 chr12 55733082 55733155 -88053300 + MLT1J2 LTR MaLR 16 84 -366 2592 65 0 3 chr12 55733155 55733465 -88052990 - AluY SINE Alu -2 309 1 666 317 85 31 chr12 55733465 55733804 -88052651 + MLT1J2 LTR MaLR 84 450 0 310 260 276 0 chr12 55734203 55734330 -88052125 - MIR SINE MIR -6 256 95 1805 167 7 7 chr12 55734331 55734624 -88051831 + AluJb SINE Alu 1 293 -19 233 195 0 0 chr12 55734717 55734758 -88051697 - L2 LINE L2 -22 3250 3210 332 329 13 20 chr12 55735049 55735138 -88051317 - MIR SINE MIR -105 157 68 2255 124 0 0 chr12 55735138 55735437 -88051018 - AluSx SINE Alu -13 299 1 332 329 13 20 chr12 55735437 55735499 -88050956 - MIR SINE MIR -194 68 7 684 281 171 12 chr12 55735563 55735908 -88050547 - MLT1J2 LTR MaLR 0 450 51 2140 148 3 0 chr12 55736699 55736996 -88049459 + AluJb SINE Alu 1 298 -14 196 312 54 0 chr12 55737049 55737142 -88049313 - L2 LINE L2 -838 2476 2379 1615 123 44 75 chr12 55737142 55737466 -88048989 - AluSx SINE Alu 0 315 1 399 21 0 0 chr12 55737698 55737746 -88048709 + (TG)n Simple_repeat Simple_repeat 2 49 0 215 312 0 0 chr12 55741692 55741769 -88044686 + GA-rich Low_complexity Low_complexity 1 77 0 358 67 0 33 chr12 55742473 55742533 -88043922 + (CGGGGG)n Simple_repeat Simple_repeat 3 60 0 564 243 77 0 chr12 55742752 55742921 -88043534 - MIR SINE MIR -74 188 7 213 231 15 62 chr12 55742947 55743012 -88043443 + L2 LINE L2 3211 3272 0 196 324 45 18 chr12 55743178 55743289 -88043166 - L2 LINE L2 -1782 1532 1419 441 308 6 16 chr12 55743302 55743484 -88042971 + (TG)n Simple_repeat Simple_repeat 1 180 0 2442 86 0 0 chr12 55743944 55744247 -88042208 - AluY SINE Alu -8 303 1 2458 93 0 13 chr12 55744396 55744709 -88041746 - AluSg SINE Alu -1 309 1 210 248 135 30 chr12 55745026 55745159 -88041296 - MIR3 SINE MIR -31 177 31 261 0 0 0 chr12 55746581 55746610 -88039845 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 183 269 75 30 chr12 55748938 55749005 -88037450 + MIR SINE MIR 35 104 -104 200 200 0 0 chr12 55749991 55750026 -88036429 + GA-rich Low_complexity Low_complexity 3 37 0 244 276 21 21 chr12 55750994 55751139 -88035316 + (CAGAGA)n Simple_repeat Simple_repeat 2 146 0 260 70 23 0 chr12 55751486 55751529 -88034926 + (TG)n Simple_repeat Simple_repeat 1 44 0 672 290 111 24 chr12 55752120 55752454 -88034001 - MARNA DNA Mariner -60 526 164 209 337 0 0 chr12 55753048 55753134 -88033321 + (TG)n Simple_repeat Simple_repeat 2 87 0 201 94 0 0 chr12 55753583 55753615 -88032840 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr12 55754254 55754276 -88032179 + GC_rich Low_complexity Low_complexity 1 22 0 244 336 7 14 chr12 55754381 55754524 -88031931 + CT-rich Low_complexity Low_complexity 1 142 0 186 43 0 0 chr12 55754684 55754707 -88031748 + (CCG)n Simple_repeat Simple_repeat 2 24 0 251 258 239 13 chr12 55754953 55755108 -88031347 + MIR SINE MIR 45 234 -28 342 0 0 0 chr12 55755583 55755621 -88030834 + (CA)n Simple_repeat Simple_repeat 1 38 0 468 35 0 0 chr12 55756196 55756254 -88030201 + (TG)n Simple_repeat Simple_repeat 2 59 0 201 191 175 0 chr12 55756793 55756856 -88029599 - MIR SINE MIR -108 154 81 539 278 88 5 chr12 55756965 55757157 -88029298 + MIR SINE MIR 15 221 -41 315 0 0 0 chr12 55757839 55757874 -88028581 + (TG)n Simple_repeat Simple_repeat 1 35 0 215 262 60 12 chr12 55757917 55758001 -88028454 - L3b LINE CR1 -174 1409 1322 394 257 44 87 chr12 55758889 55758952 -88027503 - MIR3 SINE MIR -2 206 142 785 131 0 36 chr12 55758952 55759089 -88027366 - FLAM_C SINE Alu -1 132 1 394 257 44 87 chr12 55759089 55759231 -88027224 - MIR3 SINE MIR -66 142 10 225 0 0 0 chr12 55759258 55759283 -88027172 + (TG)n Simple_repeat Simple_repeat 2 26 0 214 294 16 40 chr12 55761103 55761229 -88025226 + CT-rich Low_complexity Low_complexity 3 125 0 183 139 0 0 chr12 55761243 55761279 -88025176 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 288 320 17 20 chr12 55761428 55761619 -88024836 + CT-rich Low_complexity Low_complexity 1 190 0 193 255 0 0 chr12 55762116 55762163 -88024292 + L2 LINE L2 3208 3254 -18 1595 171 49 11 chr12 55763017 55763303 -88023152 - AluJo SINE Alu -14 298 2 2148 156 58 7 chr12 55765213 55765629 -88020826 - L1MC2 LINE L1 -1 6343 5907 858 122 0 15 chr12 55766372 55766503 -88019952 + FLAM_C SINE Alu 15 143 0 460 297 162 0 chr12 55767060 55767282 -88019173 - MIR SINE MIR -3 259 2 2250 109 0 10 chr12 55768277 55768580 -88017875 + AluSx SINE Alu 1 300 -12 330 26 0 0 chr12 55768580 55768619 -88017836 + (TA)n Simple_repeat Simple_repeat 2 40 0 1570 125 61 84 chr12 55768746 55769043 -88017412 - AluSx SINE Alu -11 301 12 2246 134 0 0 chr12 55769044 55769351 -88017104 - AluSx SINE Alu -4 308 2 276 154 0 0 chr12 55769601 55769653 -88016802 + (TG)n Simple_repeat Simple_repeat 1 52 0 2896 145 40 47 chr12 55770905 55771161 -88015294 - L1MC1 LINE L1 0 6333 6077 1967 152 0 11 chr12 55771161 55771444 -88015011 + AluJb SINE Alu 1 280 -32 2896 145 40 47 chr12 55771444 55771841 -88014614 - L1MC1 LINE L1 -256 6077 5685 207 0 0 0 chr12 55772106 55772129 -88014326 + (T)n Simple_repeat Simple_repeat 1 23 0 205 80 0 0 chr12 55772196 55772221 -88014234 + (T)n Simple_repeat Simple_repeat 1 25 0 210 37 0 0 chr12 55772241 55772268 -88014187 + (C)n Simple_repeat Simple_repeat 1 27 0 23 54 0 0 chr12 55772754 55772791 -88013664 + GC_rich Low_complexity Low_complexity 1 37 0 26 36 0 0 chr12 55772904 55772932 -88013523 + GC_rich Low_complexity Low_complexity 1 28 0 217 35 0 175 chr12 55772979 55773036 -88013419 + (G)n Simple_repeat Simple_repeat 1 47 0 207 0 0 0 chr12 55773080 55773103 -88013352 + (G)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr12 55773224 55773246 -88013209 + (G)n Simple_repeat Simple_repeat 1 22 0 209 167 0 0 chr12 55773311 55773341 -88013114 + A-rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr12 55773388 55773411 -88013044 + (G)n Simple_repeat Simple_repeat 1 23 0 24 39 0 0 chr12 55773497 55773523 -88012932 + GC_rich Low_complexity Low_complexity 1 26 0 254 88 0 0 chr12 55773617 55773651 -88012804 + (G)n Simple_repeat Simple_repeat 1 34 0 263 394 0 21 chr12 55773672 55773766 -88012689 + G-rich Low_complexity Low_complexity 4 95 0 23 74 0 0 chr12 55774131 55774158 -88012297 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 55774207 55774229 -88012226 + GC_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr12 55774263 55774289 -88012166 + (G)n Simple_repeat Simple_repeat 1 26 0 23 40 0 0 chr12 55774289 55774314 -88012141 + AT_rich Low_complexity Low_complexity 1 25 0 290 234 0 0 chr12 55774314 55774361 -88012094 + G-rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr12 55774386 55774412 -88012043 + (G)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr12 55774423 55774450 -88012005 + AT_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr12 55774529 55774554 -88011901 + (T)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr12 55774570 55774593 -88011862 + (T)n Simple_repeat Simple_repeat 1 23 0 42 0 0 0 chr12 55774689 55774731 -88011724 + AT_rich Low_complexity Low_complexity 1 42 0 22 154 0 0 chr12 55774792 55774831 -88011624 + AT_rich Low_complexity Low_complexity 1 39 0 236 444 0 0 chr12 55775355 55775427 -88011028 + G-rich Low_complexity Low_complexity 1 72 0 298 130 0 0 chr12 55775449 55775495 -88010960 + (A)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr12 55775601 55775627 -88010828 + AT_rich Low_complexity Low_complexity 1 26 0 21 43 0 0 chr12 55776041 55776064 -88010391 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr12 55776652 55776674 -88009781 + (G)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 55776702 55776723 -88009732 + GC_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr12 55776958 55776984 -88009471 + (T)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr12 55777047 55777071 -88009384 + (A)n Simple_repeat Simple_repeat 1 24 0 35 0 0 0 chr12 55777072 55777107 -88009348 + GC_rich Low_complexity Low_complexity 1 35 0 186 125 0 0 chr12 55777107 55777131 -88009324 + (T)n Simple_repeat Simple_repeat 1 24 0 209 103 0 0 chr12 55777131 55777160 -88009295 + (A)n Simple_repeat Simple_repeat 1 29 0 33 0 0 0 chr12 55777187 55777220 -88009235 + AT_rich Low_complexity Low_complexity 1 33 0 227 67 0 0 chr12 55777260 55777290 -88009165 + (G)n Simple_repeat Simple_repeat 1 30 0 33 100 0 0 chr12 55777398 55777458 -88008997 + GC_rich Low_complexity Low_complexity 1 60 0 25 69 0 0 chr12 55777478 55777507 -88008948 + AT_rich Low_complexity Low_complexity 1 29 0 260 339 0 0 chr12 55777647 55777709 -88008746 + polypurine Low_complexity Low_complexity 2 63 0 217 244 49 0 chr12 55777905 55777987 -88008468 + G-rich Low_complexity Low_complexity 6 91 0 1139 175 5 0 chr12 55778221 55778415 -88008040 + AluSp SINE Alu 98 292 -21 1218 198 24 14 chr12 55778884 55779172 -88007283 - AluSx SINE Alu -6 306 16 578 171 17 8 chr12 55779467 55779584 -88006871 - AluSc SINE Alu -190 119 2 2206 125 0 0 chr12 55779734 55780029 -88006426 + AluSx SINE Alu 1 295 -17 1991 145 161 22 chr12 55780087 55780527 -88005928 + Charlie1 DNA MER1_type 2189 2709 -52 1869 176 0 19 chr12 55780527 55780839 -88005616 - AluJo SINE Alu -6 306 1 1991 145 161 22 chr12 55780839 55780901 -88005554 + Charlie1 DNA MER1_type 2709 2761 0 2178 126 10 0 chr12 55781811 55782112 -88004343 + AluSq SINE Alu 1 304 -9 2576 77 0 3 chr12 55782113 55782425 -88004030 + AluY SINE Alu 1 311 0 1602 158 13 56 chr12 55782603 55782907 -88003548 + AluJo SINE Alu 1 291 -21 1752 184 3 0 chr12 55783245 55783533 -88002922 - AluJo SINE Alu -23 289 1 2182 123 3 10 chr12 55783672 55783974 -88002481 + AluSx SINE Alu 1 300 -12 218 231 39 0 chr12 55785008 55785060 -88001395 + GA-rich Low_complexity Low_complexity 1 54 0 428 333 0 0 chr12 55785060 55785192 -88001263 + G-rich Low_complexity Low_complexity 1 132 0 270 0 0 0 chr12 55785193 55785223 -88001232 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 21 57 0 0 chr12 55785679 55785714 -88000741 + AT_rich Low_complexity Low_complexity 1 35 0 897 139 0 16 chr12 55785714 55785843 -88000612 - AluJb SINE Alu -185 127 1 823 142 0 52 chr12 55785880 55786014 -88000441 - FLAM_C SINE Alu -16 127 1 236 296 25 12 chr12 55786063 55786144 -88000311 - L2 LINE L2 -64 3208 3127 2227 106 3 0 chr12 55786309 55786621 -87999834 + AluSx SINE Alu 1 313 0 1634 187 49 3 chr12 55786775 55787059 -87999396 + AluJb SINE Alu 1 297 -15 2233 132 0 0 chr12 55787060 55787363 -87999092 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr12 55787363 55787386 -87999069 + AT_rich Low_complexity Low_complexity 1 23 0 439 333 87 16 chr12 55787844 55788027 -87998428 - MIR SINE MIR -48 214 19 813 254 125 31 chr12 55788108 55788593 -87997862 + MER115 DNA AcHobo 118 690 -3 2420 94 0 0 chr12 55788859 55789157 -87997298 - AluSx SINE Alu -14 298 1 861 350 83 22 chr12 55789589 55790384 -87996071 + L2 LINE L2 2412 3247 -66 * 1077 230 172 8 chr12 55790377 55790528 -87995927 - L2 LINE L2 -1 3312 3187 1957 121 19 33 chr12 55790528 55790797 -87995658 + AluSq SINE Alu 11 277 -36 351 0 0 0 chr12 55790797 55790836 -87995619 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1957 121 19 33 chr12 55790836 55790873 -87995582 + AluSq SINE Alu 277 313 0 1077 230 172 8 chr12 55790873 55791099 -87995356 - L2 LINE L2 -126 3187 2873 699 175 0 8 chr12 55791169 55791289 -87995166 - FRAM SINE Alu 0 176 58 569 286 28 22 chr12 55791289 55791467 -87994988 - L2 LINE L2 -605 2709 2531 237 277 92 0 chr12 55791466 55791531 -87994924 + L2 LINE L2 3242 3312 -1 * 566 155 16 90 chr12 55791639 55791833 -87994622 + L1M2 LINE L1 5256 5435 -807 352 100 33 0 chr12 55791842 55791902 -87994553 - AluSc SINE Alu -6 293 232 1189 123 0 0 chr12 55791902 55792065 -87994390 - AluSx SINE Alu -149 163 1 564 266 42 0 chr12 55793384 55793527 -87992928 - MIR SINE MIR -33 229 81 358 209 0 0 chr12 55793531 55793598 -87992857 - MLT1B LTR MaLR 0 390 324 2100 114 3 10 chr12 55793598 55793906 -87992549 + AluSq SINE Alu 2 307 -6 767 250 6 0 chr12 55793908 55794064 -87992391 + AluJo SINE Alu 126 282 -30 180 97 0 0 chr12 55794066 55794097 -87992358 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2469 123 32 74 chr12 55794097 55794324 -87992131 - MLT1C LTR MaLR -53 414 212 2230 92 0 13 chr12 55794324 55794629 -87991826 - AluSx SINE Alu -11 301 1 2469 123 32 74 chr12 55794629 55794833 -87991622 - MLT1C LTR MaLR -255 212 1 285 331 47 41 chr12 55794939 55795108 -87991347 + L2 LINE L2 2635 2804 -510 2126 128 0 10 chr12 55795108 55795420 -87991035 - AluSx SINE Alu -3 309 1 2094 117 0 0 chr12 55795776 55796075 -87990380 + AluSx SINE Alu 1 299 -13 397 260 98 32 chr12 55796354 55796600 -87989855 + L1MC4a LINE L1 6442 6618 -1190 31 26 0 0 chr12 55796607 55796645 -87989810 + AT_rich Low_complexity Low_complexity 1 38 0 318 248 38 105 chr12 55796645 55796778 -87989677 - L1MC4 LINE L1 -1340 6702 6579 * 394 243 79 43 chr12 55796674 55796814 -87989641 + L1MC4 LINE L1 6615 6759 -1283 4362 213 94 16 chr12 55796815 55797319 -87989136 + L1MC4 LINE L1 6675 7138 -904 2153 87 0 3 chr12 55797319 55797631 -87988824 + AluSp SINE Alu 1 311 0 4362 213 94 16 chr12 55797631 55798264 -87988191 + L1MC4 LINE L1 7138 7902 -140 261 167 0 0 chr12 55798268 55798322 -87988133 + L1MC4 LINE L1 7988 8041 -1 1808 169 0 0 chr12 55798492 55798794 -87987661 + AluJb SINE Alu 1 302 -10 342 270 22 0 chr12 55798798 55798887 -87987568 + L1M4 LINE L1 4083 4173 -1973 1817 173 0 10 chr12 55798888 55799188 -87987267 + AluJo SINE Alu 1 297 -15 2077 115 3 3 chr12 55799193 55799498 -87986957 + AluSg SINE Alu 6 310 0 2271 82 0 0 chr12 55799958 55800250 -87986205 - AluSq SINE Alu -21 292 1 458 184 319 7 chr12 55800256 55800397 -87986058 - MIR SINE MIR -55 207 23 275 323 20 10 chr12 55800410 55800509 -87985946 + MIR SINE MIR 32 131 -77 285 167 0 0 chr12 55800625 55800679 -87985776 + T-rich Low_complexity Low_complexity 1 54 0 2060 127 0 0 chr12 55800773 55801064 -87985391 - AluSx SINE Alu -21 291 1 1586 159 7 22 chr12 55801208 55801371 -87985084 - AluJo SINE Alu 0 309 151 1747 120 205 35 chr12 55801371 55801537 -87984918 + MSTA LTR MaLR 1 138 -290 2371 64 0 3 chr12 55801537 55801833 -87984622 + AluY SINE Alu 1 295 -16 1747 120 205 35 chr12 55801833 55802032 -87984423 + MSTA LTR MaLR 138 428 0 1586 159 7 22 chr12 55802032 55802172 -87984283 - AluJo SINE Alu -158 151 10 1358 169 165 4 chr12 55802356 55802611 -87983844 - AluJo SINE Alu -6 296 1 26 0 0 0 chr12 55802611 55802637 -87983818 + AT_rich Low_complexity Low_complexity 1 26 0 1482 194 15 7 chr12 55802711 55802984 -87983471 - AluJb SINE Alu -37 275 1 2129 104 0 3 chr12 55803174 55803472 -87982983 - AluSc SINE Alu -12 297 1 1343 170 58 33 chr12 55803473 55803655 -87982800 - AluJb SINE Alu -12 300 107 2116 107 7 0 chr12 55803655 55803946 -87982509 + AluSg SINE Alu 1 293 -17 1343 170 58 33 chr12 55803946 55804039 -87982416 - AluJb SINE Alu -205 107 18 682 167 7 28 chr12 55804051 55804195 -87982260 - L1M4 LINE L1 -843 5303 5163 1763 134 57 3 chr12 55804195 55804478 -87981977 - AluJo SINE Alu -14 298 1 2136 92 3 20 chr12 55804485 55804790 -87981665 - AluSp SINE Alu -13 300 1 796 156 0 22 chr12 55804814 55804949 -87981506 - FLAM_C SINE Alu 0 143 12 346 54 36 0 chr12 55804960 55805016 -87981439 - L1M4 LINE L1 -5246 1296 1239 2318 136 27 33 chr12 55805017 55805061 -87981394 + MSTC LTR MaLR 1 44 -384 2021 123 3 0 chr12 55805061 55805353 -87981102 - AluSx SINE Alu -19 293 1 2318 136 27 33 chr12 55805353 55805676 -87980779 + MSTC LTR MaLR 44 366 -62 296 74 86 123 chr12 55805710 55805743 -87980712 + MSTC LTR MaLR 351 384 -44 2035 89 3 3 chr12 55805743 55806049 -87980406 + AluSx SINE Alu 1 306 0 296 74 86 123 chr12 55806049 55806093 -87980362 + MSTC LTR MaLR 384 428 0 628 167 218 0 chr12 55806094 55806136 -87980319 - L1M4 LINE L1 -5301 1241 1209 1521 182 10 10 chr12 55806136 55806438 -87980017 + AluJo SINE Alu 4 305 -7 628 167 218 0 chr12 55806438 55806569 -87979886 - L1M4 LINE L1 -5333 1209 1030 1894 151 0 0 chr12 55806571 55806870 -87979585 + AluSx SINE Alu 1 299 -13 2828 158 62 4 chr12 55806873 55807373 -87979082 + ERVL LTR ERVL 918 1446 -4318 547 242 60 83 chr12 55807373 55807428 -87979027 - LTR26 LTR ERV1 -1 602 547 1749 166 3 3 chr12 55807428 55807736 -87978719 + AluJo SINE Alu 1 308 -4 547 242 60 83 chr12 55807736 55807932 -87978523 - LTR26 LTR ERV1 -56 547 357 1007 171 37 0 chr12 55807940 55808104 -87978351 + ERVL LTR ERVL 2602 2771 -2993 616 167 0 0 chr12 55808108 55808204 -87978251 - FRAM SINE Alu -17 159 64 5404 188 62 2 chr12 55808205 55808429 -87978026 + ERVL LTR ERVL 2998 3207 -2447 2162 112 0 3 chr12 55808429 55808732 -87977723 - AluSq SINE Alu -11 302 1 5404 188 62 2 chr12 55808732 55809490 -87976965 + ERVL LTR ERVL 3207 4039 -1615 1283 91 83 0 chr12 55809490 55809782 -87976673 + L1P5 LINE L1 5179 5491 -665 848 115 61 14 chr12 55809782 55809930 -87976525 + AluSg/x SINE Alu 156 310 0 532 161 42 11 chr12 55809930 55810020 -87976435 + L1M3 LINE L1 5479 5573 -592 7390 48 7 0 chr12 55810020 55811407 -87975048 + L1PA6 LINE L1 4762 6154 0 532 161 42 11 chr12 55811407 55811422 -87975033 + L1M3 LINE L1 5573 5586 -579 8323 141 14 39 chr12 55811422 55812205 -87974250 + ERVL LTR ERVL 4082 4818 -946 2065 126 7 0 chr12 55812205 55812499 -87973956 - AluSx SINE Alu -16 296 1 8323 141 14 39 chr12 55812499 55813101 -87973354 + ERVL LTR ERVL 4818 5433 -331 201 39 0 0 chr12 55813101 55813127 -87973328 + (CA)n Simple_repeat Simple_repeat 2 27 0 406 147 15 0 chr12 55813155 55813223 -87973232 - MLT2A2 LTR ERVL 0 453 385 1709 101 0 4 chr12 55813223 55813461 -87972994 + AluSq SINE Alu 1 237 -76 753 87 0 0 chr12 55813462 55813566 -87972889 + AluSg/x SINE Alu 206 309 -1 2445 164 22 90 chr12 55813567 55813867 -87972588 - MLT2B3 LTR ERVL -54 500 250 2049 128 0 7 chr12 55813867 55814171 -87972284 + AluSx SINE Alu 1 302 -10 2445 164 22 90 chr12 55814171 55814406 -87972049 - MLT2B3 LTR ERVL -304 250 1 268 80 180 0 chr12 55814406 55814456 -87971999 + ERVL LTR ERVL 5439 5497 -267 298 170 57 0 chr12 55814456 55814509 -87971946 + AluJ/FLAM SINE Alu 6 61 -241 39 0 0 0 chr12 55815017 55815056 -87971399 + AT_rich Low_complexity Low_complexity 1 39 0 534 59 32 70 chr12 55815056 55815242 -87971213 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 267 54 0 0 chr12 55815258 55815295 -87971160 + (GA)n Simple_repeat Simple_repeat 2 38 0 850 209 83 47 chr12 55815297 55815574 -87970881 - L1M4 LINE L1 -1027 5119 4833 812 145 5 150 chr12 55815575 55815768 -87970687 - AluJo SINE Alu -17 295 131 1960 116 0 3 chr12 55815785 55816069 -87970386 + AluSq SINE Alu 1 283 -30 507 226 70 9 chr12 55816136 55816251 -87970204 + L2 LINE L2 3192 3313 0 868 145 0 0 chr12 55816314 55816445 -87970010 - AluJo SINE Alu -181 131 1 328 355 50 14 chr12 55816565 55816706 -87969749 + L2 LINE L2 3116 3261 -11 2005 147 0 6 chr12 55816707 55817021 -87969434 + AluJb SINE Alu 1 312 0 699 272 41 10 chr12 55817386 55817581 -87968874 - MIR3 SINE MIR -7 201 1 378 0 0 0 chr12 55817712 55817754 -87968701 + (TC)n Simple_repeat Simple_repeat 1 42 0 375 154 0 0 chr12 55818598 55818663 -87967792 + (ATGGTG)n Simple_repeat Simple_repeat 5 69 0 542 278 105 15 chr12 55818665 55818869 -87967586 - MIR SINE MIR -2 260 50 233 245 51 51 chr12 55819137 55819235 -87967220 + L2 LINE L2 3210 3307 -6 33 43 0 0 chr12 55819767 55819814 -87966641 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr12 55819893 55819914 -87966541 + AT_rich Low_complexity Low_complexity 1 21 0 204 347 14 0 chr12 55821936 55822008 -87964447 - MIR SINE MIR -2 260 188 549 170 21 0 chr12 55822247 55822341 -87964114 + AluJ/FLAM SINE Alu 2 97 -215 328 294 5 108 chr12 55822565 55822637 -87963818 - MER5A DNA MER1_type -15 174 96 1360 182 31 10 chr12 55822637 55822928 -87963527 - AluJo SINE Alu -15 297 1 328 294 5 108 chr12 55822928 55823049 -87963406 - MER5A DNA MER1_type -93 96 1 2135 88 17 3 chr12 55823159 55823454 -87963001 - AluSp SINE Alu -14 299 1 2164 72 7 0 chr12 55823645 55823955 -87962500 - AluSg SINE Alu 0 312 1 1297 175 4 8 chr12 55824514 55824766 -87961689 + AluSx SINE Alu 42 292 -20 1878 101 62 3 chr12 55824890 55825178 -87961277 - AluSq SINE Alu -8 305 1 577 224 8 0 chr12 55825178 55825312 -87961143 + MER3 DNA MER1_type 35 122 -87 534 181 0 0 chr12 55825322 55825416 -87961039 + AluS SINE Alu 8 101 -211 289 197 14 70 chr12 55825537 55825608 -87960847 + AluSc SINE Alu 230 296 -3 1654 181 94 59 chr12 55826868 55827181 -87959274 - MER47B DNA MER2_type -1905 418 86 2149 108 3 16 chr12 55827181 55827495 -87958960 - AluSx SINE Alu -2 310 1 1654 181 94 59 chr12 55827495 55827585 -87958870 - MER47B DNA MER2_type -2237 86 1 208 207 0 52 chr12 55827659 55827717 -87958738 + L2 LINE L2 3010 3064 -208 516 265 86 56 chr12 55827736 55827970 -87958485 + MIR SINE MIR 10 250 -12 312 160 20 0 chr12 55828323 55828373 -87958082 + Alu SINE Alu 2 52 -251 1334 111 5 5 chr12 55828525 55828724 -87957731 - AluSx SINE Alu -113 199 1 424 199 319 7 chr12 55828730 55828871 -87957584 - MIR SINE MIR -55 207 23 297 313 20 10 chr12 55828884 55828983 -87957472 + MIR SINE MIR 32 131 -77 285 167 0 0 chr12 55829099 55829153 -87957302 + T-rich Low_complexity Low_complexity 1 54 0 2060 127 0 0 chr12 55829247 55829538 -87956917 - AluSx SINE Alu -21 291 1 1586 159 7 22 chr12 55829682 55829845 -87956610 - AluJo SINE Alu 0 309 151 1747 120 205 35 chr12 55829845 55830011 -87956444 + MSTA LTR MaLR 1 138 -290 2371 64 0 3 chr12 55830011 55830307 -87956148 + AluY SINE Alu 1 295 -16 1747 120 205 35 chr12 55830307 55830506 -87955949 + MSTA LTR MaLR 138 428 0 1586 159 7 22 chr12 55830506 55830646 -87955809 - AluJo SINE Alu -158 151 10 1358 169 165 4 chr12 55830830 55831085 -87955370 - AluJo SINE Alu -6 296 1 26 0 0 0 chr12 55831085 55831111 -87955344 + AT_rich Low_complexity Low_complexity 1 26 0 1482 194 15 7 chr12 55831185 55831458 -87954997 - AluJb SINE Alu -37 275 1 2104 114 3 0 chr12 55831648 55831947 -87954508 - AluSx SINE Alu -12 300 1 1838 129 16 29 chr12 55831951 55832260 -87954195 - AluSx SINE Alu -7 305 1 796 213 17 11 chr12 55832260 55832397 -87954058 + MER3 DNA MER1_type 35 176 -33 1768 139 11 0 chr12 55832397 55832699 -87953756 + AluSx SINE Alu 1 305 0 796 213 17 11 chr12 55832699 55832734 -87953721 + MER3 DNA MER1_type 176 209 0 1653 183 91 59 chr12 55833945 55834259 -87952196 - MER47B DNA MER2_type -1905 418 87 2165 105 3 16 chr12 55834259 55834573 -87951882 - AluSx SINE Alu -2 310 1 1653 183 91 59 chr12 55834573 55834663 -87951792 - MER47B DNA MER2_type -2236 87 1 208 207 0 52 chr12 55834737 55834795 -87951660 + L2 LINE L2 3010 3064 -208 499 269 86 56 chr12 55834814 55835048 -87951407 + MIR SINE MIR 10 250 -12 863 108 0 0 chr12 55835400 55835520 -87950935 + AluSp SINE Alu 1 120 -193 1651 85 55 0 chr12 55835520 55835756 -87950699 + AluSq SINE Alu 57 305 -8 505 258 0 0 chr12 55835890 55836010 -87950445 + C-rich Low_complexity Low_complexity 1 120 0 212 338 0 15 chr12 55836050 55836118 -87950337 + CT-rich Low_complexity Low_complexity 3 69 0 246 303 11 28 chr12 55836140 55836318 -87950137 + A-rich Low_complexity Low_complexity 5 179 0 576 230 78 7 chr12 55836505 55836775 -87949680 - AluSg SINE Alu -11 289 1 402 115 0 0 chr12 55836907 55836968 -87949487 + (TA)n Simple_repeat Simple_repeat 1 61 0 1973 117 17 0 chr12 55836970 55837260 -87949195 - AluSx SINE Alu -17 295 1 1845 127 19 26 chr12 55837264 55837571 -87948884 - AluSx SINE Alu -7 305 1 796 213 17 11 chr12 55837571 55837708 -87948747 + MER3 DNA MER1_type 35 176 -33 1768 139 11 0 chr12 55837708 55838010 -87948445 + AluSx SINE Alu 1 305 0 796 213 17 11 chr12 55838010 55838045 -87948410 + MER3 DNA MER1_type 176 209 0 1653 183 91 59 chr12 55839266 55839580 -87946875 - MER47B DNA MER2_type -1905 418 87 2165 105 3 16 chr12 55839580 55839894 -87946561 - AluSx SINE Alu -2 310 1 1653 183 91 59 chr12 55839894 55839984 -87946471 - MER47B DNA MER2_type -2236 87 1 208 207 0 52 chr12 55840058 55840116 -87946339 + L2 LINE L2 3010 3064 -208 516 265 86 56 chr12 55840135 55840369 -87946086 + MIR SINE MIR 10 250 -12 863 108 0 0 chr12 55840721 55840841 -87945614 + AluSp SINE Alu 1 120 -193 1570 102 55 0 chr12 55840841 55841076 -87945379 + AluSq SINE Alu 57 304 -9 23 54 0 0 chr12 55891809 55891846 -87894609 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 55892106 55892140 -87894315 + AT_rich Low_complexity Low_complexity 1 34 0 252 149 0 0 chr12 55892201 55892248 -87894207 + (GA)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr12 55898859 55898888 -87887567 + AT_rich Low_complexity Low_complexity 1 29 0 183 184 0 0 chr12 55902402 55902440 -87884015 + CT-rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr12 55903092 55903117 -87883338 + (TA)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr12 55904246 55904271 -87882184 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 55905566 55905586 -87880869 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 243 263 18 0 chr12 55907643 55907700 -87878755 + CT-rich Low_complexity Low_complexity 2 59 0 182 286 20 0 chr12 55911370 55911419 -87875036 + L2 LINE L2 3214 3263 -9 192 77 0 0 chr12 55912429 55912455 -87874000 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chr12 55915898 55915922 -87870533 + (TAA)n Simple_repeat Simple_repeat 3 26 0 1749 149 51 0 chr12 55916535 55916811 -87869644 - AluSq SINE Alu -23 290 1 2248 109 3 0 chr12 55916814 55917126 -87869329 - AluSp SINE Alu 0 313 1 441 0 0 0 chr12 55918767 55918816 -87867639 + (TG)n Simple_repeat Simple_repeat 2 50 0 334 0 43 0 chr12 55919669 55919715 -87866740 + (TG)n Simple_repeat Simple_repeat 2 49 0 365 333 51 0 chr12 55919999 55920155 -87866300 - L2 LINE L2 -8 3264 3101 1813 162 3 16 chr12 55922552 55922860 -87863595 - AluJb SINE Alu -8 304 1 482 261 54 8 chr12 55923275 55923405 -87863050 - L2 LINE L2 0 3272 3137 567 237 75 27 chr12 55923422 55923608 -87862847 - L2 LINE L2 -2 3311 3117 184 247 146 0 chr12 55924249 55924338 -87862117 - L2 LINE L2 -251 3021 2920 2099 104 0 3 chr12 55924522 55924811 -87861644 - AluSx SINE Alu -4 308 21 1324 132 114 86 chr12 55924816 55925096 -87861359 - AluJo SINE Alu -16 296 9 295 261 109 0 chr12 55925586 55925678 -87860777 + L2 LINE L2 3202 3303 -10 213 369 23 8 chr12 55925689 55925819 -87860636 - L2 LINE L2 -830 2484 2353 21 36 0 0 chr12 55928104 55928132 -87858323 + AT_rich Low_complexity Low_complexity 1 28 0 316 232 18 29 chr12 55928489 55928650 -87857805 - MIR SINE MIR -2 260 29 781 99 9 0 chr12 55928759 55928870 -87857585 + HY1 scRNA scRNA 1 112 0 181 333 19 0 chr12 55928910 55928964 -87857491 + MIR SINE MIR 39 93 -115 618 302 81 0 chr12 55929020 55929242 -87857213 + MIR SINE MIR 13 252 -10 2127 110 0 7 chr12 55929424 55929723 -87856732 + AluY SINE Alu 1 297 -14 189 158 18 105 chr12 55929916 55929973 -87856482 + MIR3 SINE MIR 157 208 0 1266 251 129 24 chr12 55932310 55932487 -87853968 + L2 LINE L2 2537 2694 -619 2079 130 0 0 chr12 55932487 55932786 -87853669 + AluSg SINE Alu 1 299 -11 1266 251 129 24 chr12 55932786 55933334 -87853121 + L2 LINE L2 2694 3313 0 270 365 0 0 chr12 55933832 55933928 -87852527 + L3b LINE CR1 1299 1394 -189 316 304 58 22 chr12 55934404 55934542 -87851913 + L1MC4a LINE L1 6088 6230 -1578 227 284 78 29 chr12 55934646 55934748 -87851707 - MIR3 SINE MIR -87 121 15 209 108 27 0 chr12 55934949 55934986 -87851469 + CT-rich Low_complexity Low_complexity 3 40 0 377 253 11 0 chr12 55935009 55935100 -87851355 + MIR SINE MIR 56 147 -115 243 270 180 0 chr12 55936730 55936830 -87849625 + L2 LINE L2 3153 3270 -2 424 310 19 0 chr12 55936831 55936989 -87849466 + MIR3 SINE MIR 48 208 0 201 239 9 80 chr12 55937328 55937441 -87849014 + C-rich Low_complexity Low_complexity 3 107 0 203 343 23 8 chr12 55937724 55937823 -87848632 + MIR SINE MIR 44 143 -65 962 225 20 40 chr12 55938682 55938865 -87847590 - MIR SINE MIR -2 260 82 1767 131 5 182 chr12 55938865 55939309 -87847146 + MER47A DNA MER2_type 1 365 -1 962 225 20 40 chr12 55939309 55939378 -87847077 - MIR SINE MIR -180 82 13 384 283 58 68 chr12 55939316 55939507 -87846948 + MIR SINE MIR 13 201 -61 * 410 303 41 35 chr12 55939665 55939810 -87846645 - MIR SINE MIR -90 172 27 895 144 17 35 chr12 55940624 55940754 -87845701 + MER5B DNA MER1_type 8 136 -42 2024 118 3 16 chr12 55940754 55941068 -87845387 + AluSq SINE Alu 1 310 -3 895 144 17 35 chr12 55941068 55941110 -87845345 + MER5B DNA MER1_type 136 177 -1 517 251 190 6 chr12 55941321 55941484 -87844971 - MIR SINE MIR -68 194 2 243 61 0 0 chr12 55944202 55944235 -87842220 + (TC)n Simple_repeat Simple_repeat 2 34 0 947 178 0 0 chr12 55944597 55944760 -87841695 + FRAM SINE Alu 11 173 -3 323 156 0 22 chr12 55945403 55945493 -87840962 + C-rich Low_complexity Low_complexity 1 88 0 2513 168 54 26 chr12 55945984 55946483 -87839972 - MLT2B2 LTR ERVL -1 514 2 263 257 20 54 chr12 55947054 55947202 -87839253 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 851 226 96 13 chr12 55948509 55948748 -87837707 + MIR SINE MIR 1 259 -3 1883 122 51 17 chr12 55949319 55949613 -87836842 - AluJo SINE Alu -5 307 4 362 327 0 0 chr12 55950688 55950795 -87835660 - MIR SINE MIR -1 261 155 2291 86 0 13 chr12 55950795 55951098 -87835357 - AluSx SINE Alu -13 299 1 1816 163 0 7 chr12 55951098 55951392 -87835063 - AluJb SINE Alu -20 292 1 294 228 105 86 chr12 55951405 55951567 -87834888 + MIR SINE MIR 6 170 -92 214 182 0 23 chr12 55952593 55952637 -87833818 + CT-rich Low_complexity Low_complexity 2 44 0 208 299 63 39 chr12 55953051 55953178 -87833277 - L3b LINE CR1 -160 1423 1294 194 213 0 27 chr12 55953504 55953579 -87832876 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 2249 86 0 7 chr12 55954449 55954752 -87831703 - AluSg1 SINE Alu -8 301 1 2176 84 0 50 chr12 55954758 55955078 -87831377 - AluY SINE Alu -7 304 1 291 325 28 22 chr12 55955218 55955394 -87831061 - MIR SINE MIR -54 154 4 452 376 51 17 chr12 55955481 55955832 -87830623 + L2 LINE L2 2849 3211 -61 317 332 17 30 chr12 55956039 55956051 -87830404 + GA-rich Low_complexity Low_complexity 1 12 -476 2217 95 0 3 chr12 55956051 55956356 -87830099 + AluY SINE Alu 1 304 -7 317 332 17 30 chr12 55956356 55956534 -87829921 + GA-rich Low_complexity Low_complexity 12 488 0 193 284 40 27 chr12 55956745 55956819 -87829636 - MIR SINE MIR -81 181 107 285 298 0 39 chr12 55957430 55957534 -87828921 - L3b LINE CR1 -152 1431 1332 241 298 57 16 chr12 55958094 55958218 -87828237 + MIR SINE MIR 18 146 -62 2181 79 10 3 chr12 55958222 55958514 -87827941 + AluSc SINE Alu 1 294 -15 1952 121 14 0 chr12 55958617 55958927 -87827528 + AluSx SINE Alu 1 314 0 535 183 0 0 chr12 55958950 55959032 -87827423 + AluJ/FLAM SINE Alu 1 82 -230 1573 185 6 22 chr12 55959036 55959350 -87827105 + AluJb SINE Alu 1 309 -3 2348 69 3 7 chr12 55959356 55959661 -87826794 + AluY SINE Alu 1 304 -7 205 279 18 63 chr12 55960504 55960615 -87825840 - L3b LINE CR1 -155 1428 1323 1918 117 0 26 chr12 55961067 55961374 -87825081 + AluSx SINE Alu 10 308 -4 2003 134 10 3 chr12 55961465 55961770 -87824685 + AluJb SINE Alu 1 307 -5 2314 96 3 0 chr12 55962134 55962446 -87824009 - AluSp SINE Alu 0 313 1 656 257 70 26 chr12 55962892 55963164 -87823291 + L2 LINE L2 2420 2703 -611 354 303 0 0 chr12 55963709 55963798 -87822657 + L2 LINE L2 3184 3272 0 537 245 168 0 chr12 55963872 55964027 -87822428 - MER5A DNA MER1_type -5 184 4 2101 111 0 0 chr12 55965981 55966278 -87820177 - AluSg SINE Alu -9 301 5 1528 211 0 0 chr12 55966671 55966972 -87819483 - AluJo SINE Alu 0 302 2 331 226 179 0 chr12 55967330 55967436 -87819019 + MIR SINE MIR 97 221 -41 662 237 88 16 chr12 55968496 55968690 -87817765 - MIR SINE MIR -41 221 14 1007 249 4 9 chr12 55968896 55969125 -87817330 - MIR SINE MIR -34 228 1 281 358 6 22 chr12 55970621 55970800 -87815655 + GA-rich Low_complexity Low_complexity 1 176 0 203 242 16 16 chr12 55971179 55971241 -87815214 + G-rich Low_complexity Low_complexity 4 65 0 207 161 0 0 chr12 55972642 55972673 -87813782 + polypyrimidine Low_complexity Low_complexity 3 33 0 252 0 0 0 chr12 55973186 55973214 -87813241 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 2137 107 10 0 chr12 55974359 55974650 -87811805 - AluSx SINE Alu -18 294 1 180 77 0 0 chr12 55975178 55975204 -87811251 + (CA)n Simple_repeat Simple_repeat 2 27 0 255 347 123 40 chr12 55975525 55975802 -87810653 + L2 LINE L2 2933 3232 -40 373 259 22 17 chr12 55975814 55975960 -87810495 + MIR3 SINE MIR 13 155 -53 249 263 182 0 chr12 55977444 55977543 -87808912 - MIR3 SINE MIR -86 122 6 248 130 22 0 chr12 55978269 55978315 -87808140 + (TAA)n Simple_repeat Simple_repeat 2 48 0 278 211 0 0 chr12 55978330 55978382 -87808073 - MIR3 SINE MIR -48 160 109 298 297 0 11 chr12 55978448 55978539 -87807916 + MIR3 SINE MIR 97 186 -22 2016 148 0 0 chr12 55978629 55978926 -87807529 - AluSx SINE Alu -15 297 1 258 32 0 0 chr12 55979613 55979644 -87806811 + (T)n Simple_repeat Simple_repeat 1 31 0 594 0 0 0 chr12 55980655 55980721 -87805734 + (CA)n Simple_repeat Simple_repeat 1 66 0 194 152 167 45 chr12 55980747 55980813 -87805642 + L2 LINE L2 308 381 -2933 901 64 0 0 chr12 55982981 55983091 -87803364 + AluSp SINE Alu 1 110 -203 1238 79 22 17 chr12 55983192 55983389 -87803066 + AluSp SINE Alu 112 313 0 184 349 79 8 chr12 55983542 55983668 -87802787 + MIR SINE MIR 20 154 -108 321 206 164 62 chr12 55983782 55983928 -87802527 + MIR3 SINE MIR 41 201 -7 436 243 243 0 chr12 55985314 55985487 -87800968 + MIR SINE MIR 31 245 -17 432 215 22 89 chr12 55985554 55985689 -87800766 - MIR SINE MIR -57 205 80 271 340 0 19 chr12 55987420 55987582 -87798873 + GA-rich Low_complexity Low_complexity 2 160 0 218 275 18 18 chr12 55988007 55988116 -87798339 + (TCCA)n Simple_repeat Simple_repeat 3 111 0 2419 69 0 0 chr12 55988747 55989053 -87797402 - AluY SINE Alu -5 306 1 1955 98 45 3 chr12 55990824 55991111 -87795344 - AluY SINE Alu -12 299 1 310 266 28 121 chr12 55992946 55993194 -87793261 + L2 LINE L2 3027 3251 -21 1528 163 20 47 chr12 55993439 55993597 -87792858 - AluJo SINE Alu -19 293 145 2101 109 0 20 chr12 55993597 55993899 -87792556 - AluSx SINE Alu -12 300 5 1528 163 20 47 chr12 55993899 55994041 -87792414 - AluJo SINE Alu -167 145 1 233 189 75 0 chr12 55995063 55995116 -87791339 + MER91C DNA MER1_type 37 93 -47 1922 127 3 11 chr12 55995490 55995774 -87790681 + AluJo SINE Alu 9 290 -22 466 281 88 0 chr12 55996123 55996283 -87790172 - MARNA DNA Mariner -97 489 316 448 262 97 7 chr12 55996344 55996489 -87789966 - MARNA DNA Mariner -392 194 37 260 340 51 13 chr12 56000636 56000792 -87785663 + L2 LINE L2 3147 3308 -5 276 53 0 0 chr12 56001480 56001518 -87784937 + (TG)n Simple_repeat Simple_repeat 2 39 0 504 32 0 0 chr12 56006511 56006573 -87779882 + (CA)n Simple_repeat Simple_repeat 2 63 0 21 0 0 0 chr12 56007165 56007186 -87779269 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 56007637 56007663 -87778792 + AT_rich Low_complexity Low_complexity 1 26 0 312 287 0 21 chr12 56011155 56011249 -87775206 + CT-rich Low_complexity Low_complexity 2 93 0 1849 132 7 0 chr12 56011698 56012019 -87774436 + AluSq SINE Alu 10 332 0 181 246 105 0 chr12 56012036 56012093 -87774362 + MIR SINE MIR 102 164 -98 252 221 150 63 chr12 56012257 56012384 -87774071 + MER5B DNA MER1_type 15 152 -26 182 346 0 0 chr12 56012710 56012762 -87773693 + L2 LINE L2 3219 3270 -2 1323 71 0 0 chr12 56013581 56013750 -87772705 + AluSg/x SINE Alu 144 312 0 261 143 0 20 chr12 56013785 56013834 -87772621 + MER5A DNA MER1_type 62 109 -80 252 209 88 77 chr12 56013949 56014040 -87772415 + MIR SINE MIR 101 192 -70 516 305 89 0 chr12 56014142 56014332 -87772123 + MIR SINE MIR 48 254 -8 372 246 35 35 chr12 56014646 56014760 -87771695 + MIR3 SINE MIR 64 177 -31 427 267 164 12 chr12 56015260 56015425 -87771030 - MIR SINE MIR -1 261 72 240 294 0 39 chr12 56015528 56015630 -87770825 + G-rich Low_complexity Low_complexity 5 102 0 443 195 81 74 chr12 56016003 56016152 -87770303 + MIR SINE MIR 56 205 -57 2005 101 0 17 chr12 56016155 56016451 -87770004 - AluSx SINE Alu -21 291 1 2484 61 0 6 chr12 56016687 56016999 -87769456 + AluY SINE Alu 1 310 -1 771 158 12 0 chr12 56019019 56019263 -87767192 + (CA)n Simple_repeat Simple_repeat 1 247 0 22 0 0 0 chr12 56019617 56019639 -87766816 + AT_rich Low_complexity Low_complexity 1 22 0 190 323 48 96 chr12 56020528 56020757 -87765698 - L2 LINE L2 -68 3204 2987 923 165 12 6 chr12 56020782 56020952 -87765503 + AluJb SINE Alu 133 303 -9 236 287 93 93 chr12 56021215 56021284 -87765171 - L2 LINE L2 -537 2777 2709 2215 99 3 6 chr12 56021284 56021597 -87764858 - AluSx SINE Alu 0 312 1 236 287 93 93 chr12 56021597 56021785 -87764670 - L2 LINE L2 -604 2710 2520 2274 98 0 3 chr12 56022596 56022903 -87763552 + AluSq SINE Alu 1 306 -7 256 196 0 0 chr12 56024102 56024148 -87762307 - L2 LINE L2 -2 3311 3266 218 330 78 17 chr12 56026075 56026190 -87760265 + L2 LINE L2 3190 3311 -2 421 268 131 11 chr12 56026371 56026554 -87759901 + MIR SINE MIR 20 224 -38 2186 74 3 49 chr12 56026691 56027017 -87759438 + AluY SINE Alu 1 311 0 2496 55 3 0 chr12 56027022 56027331 -87759124 + AluY SINE Alu 1 310 -1 1750 113 0 0 chr12 56027666 56027914 -87758541 + AluSx SINE Alu 1 248 -64 1282 186 36 0 chr12 56029333 56029581 -87756874 - AluJo SINE Alu -55 257 1 310 350 43 0 chr12 56029938 56030055 -87756400 - L2 LINE L2 0 3272 3151 23 0 0 0 chr12 56031267 56031290 -87755165 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr12 56031675 56031702 -87754753 + (TG)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr12 56033378 56033418 -87753037 + (TG)n Simple_repeat Simple_repeat 2 41 0 210 237 0 0 chr12 56036386 56036424 -87750031 + polypyrimidine Low_complexity Low_complexity 2 39 0 207 0 0 0 chr12 56037538 56037561 -87748894 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 315 0 0 0 chr12 56037560 56037595 -87748860 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr12 56037899 56037920 -87748535 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 288 0 0 0 chr12 56037919 56037951 -87748504 + (TG)n Simple_repeat Simple_repeat 2 33 0 277 303 9 28 chr12 56038391 56038500 -87747955 + MIR SINE MIR 156 262 0 496 293 149 14 chr12 56038518 56038726 -87747729 - MIR SINE MIR -14 248 13 1652 141 94 51 chr12 56038880 56038944 -87747511 - Charlie1 DNA MER1_type 0 2761 2701 2121 84 7 13 chr12 56038944 56039243 -87747212 + AluSq SINE Alu 1 297 -16 1652 141 94 51 chr12 56039243 56039652 -87746803 - Charlie1 DNA MER1_type -60 2701 1 211 0 88 0 chr12 56039817 56039851 -87746604 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 384 261 51 36 chr12 56039984 56040122 -87746333 - MIR3 SINE MIR -56 152 13 289 295 68 30 chr12 56040779 56040914 -87745541 + MIR SINE MIR 19 156 -60 2541 246 55 23 chr12 56041118 56041192 -87745263 + L2 LINE L2 2209 2279 -1035 2199 94 10 3 chr12 56041192 56041491 -87744964 + AluSc SINE Alu 1 301 -8 2541 246 55 23 chr12 56041491 56042160 -87744295 + L2 LINE L2 2279 2976 -338 202 194 15 45 chr12 56043196 56043263 -87743192 + (CGGGG)n Simple_repeat Simple_repeat 1 65 0 24 0 0 0 chr12 56043327 56043351 -87743104 + GC_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 56043442 56043465 -87742990 + GC_rich Low_complexity Low_complexity 1 23 0 384 313 50 44 chr12 56044749 56044931 -87741524 - L3b LINE CR1 -123 1460 1278 393 221 44 81 chr12 56045485 56045621 -87740834 + L2 LINE L2 3134 3264 -8 2282 102 3 0 chr12 56045728 56046021 -87740434 + AluSp SINE Alu 1 294 -19 1878 139 31 17 chr12 56046021 56046308 -87740147 + AluJb SINE Alu 1 291 -21 2684 41 0 10 chr12 56046308 56046622 -87739833 + AluY SINE Alu 1 311 0 393 305 42 24 chr12 56046977 56047144 -87739311 + MER5B DNA MER1_type 9 178 0 874 182 105 0 chr12 56047154 56047335 -87739120 + MER3 DNA MER1_type 1 200 -9 1344 206 100 14 chr12 56047677 56048036 -87738419 + MLT1B LTR MaLR 1 390 0 1524 209 106 90 chr12 56048552 56049097 -87737358 + MLT2B3 LTR ERVL 1 554 0 188 338 28 0 chr12 56049127 56049198 -87737257 + L2 LINE L2 2977 3049 -223 1277 229 45 96 chr12 56049366 56049968 -87736487 - MER21B LTR ERV1 -150 713 143 335 272 11 11 chr12 56050090 56050182 -87736273 - MER21B LTR ERV1 -765 98 7 1921 135 4 0 chr12 56050520 56050786 -87735669 + AluSx SINE Alu 32 298 -14 697 246 92 0 chr12 56051140 56051335 -87735120 - MIR SINE MIR -13 249 37 226 286 18 0 chr12 56054032 56054088 -87732367 + L2 LINE L2 3246 3302 -11 799 247 66 22 chr12 56054230 56054457 -87731998 - MIR SINE MIR -24 238 2 189 308 31 0 chr12 56054598 56054663 -87731792 + MIR SINE MIR 117 183 -79 2091 95 3 49 chr12 56054664 56054810 -87731645 + AluSq SINE Alu 1 152 -193 2138 110 17 3 chr12 56054810 56055100 -87731355 + AluSp SINE Alu 2 295 -18 2091 95 3 49 chr12 56055100 56055312 -87731143 + AluSq SINE Alu 152 345 0 2196 98 7 20 chr12 56055314 56055609 -87730846 + AluSg SINE Alu 2 292 -18 261 300 0 25 chr12 56055641 56055721 -87730734 + G-rich Low_complexity Low_complexity 1 78 0 2223 104 4 0 chr12 56056113 56056422 -87730033 - AluSg SINE Alu 0 310 1 326 172 0 31 chr12 56056426 56056490 -87729965 + MER5A DNA MER1_type 128 189 0 865 167 0 0 chr12 56056682 56056814 -87729641 + AluJ SINE Alu 2 133 -169 608 0 0 14 chr12 56058050 56058123 -87728332 + (TAA)n Simple_repeat Simple_repeat 2 73 0 2348 88 7 0 chr12 56058128 56058434 -87728021 + AluSg SINE Alu 1 308 -2 1246 86 12 6 chr12 56059168 56059331 -87727124 - AluY SINE Alu -129 182 19 1038 125 19 87 chr12 56059345 56059553 -87726902 + AluJ SINE Alu 108 301 -11 284 284 25 86 chr12 56059732 56059894 -87726561 - MIR SINE MIR -109 153 2 1007 168 6 6 chr12 56060898 56061071 -87725384 - FRAM SINE Alu -4 172 1 198 0 0 0 chr12 56061650 56061672 -87724783 + (CA)n Simple_repeat Simple_repeat 1 22 0 2301 111 0 0 chr12 56061919 56062217 -87724238 + AluSq SINE Alu 1 298 -15 1083 93 0 0 chr12 56062809 56062948 -87723507 - AluSp/q SINE Alu -7 306 168 2056 120 0 47 chr12 56064014 56064331 -87722124 + AluSq SINE Alu 1 302 -11 1344 94 6 0 chr12 56064331 56064501 -87721954 + AluSq SINE Alu 134 304 -9 584 151 27 75 chr12 56067267 56067413 -87719042 - MIR SINE MIR -64 198 60 1532 132 8 37 chr12 56068510 56068753 -87717702 + AluJo SINE Alu 1 236 -76 2347 89 10 0 chr12 56068764 56069068 -87717387 + AluSg1 SINE Alu 1 307 -2 2075 132 7 0 chr12 56069592 56069888 -87716567 - AluJo SINE Alu -14 298 1 236 330 11 11 chr12 56070034 56070128 -87716327 + GA-rich Low_complexity Low_complexity 2 95 0 2144 123 0 10 chr12 56070903 56071249 -87715206 + AluSx SINE Alu 3 312 0 374 274 18 44 chr12 56071825 56072027 -87714428 + CT-rich Low_complexity Low_complexity 1 196 0 315 308 43 17 chr12 56072027 56072144 -87714311 - L1MC4a LINE L1 -1714 6094 5975 770 214 31 27 chr12 56077701 56077896 -87708559 + MIR SINE MIR 68 262 0 * 1076 198 33 0 chr12 56077895 56078107 -87708348 + MIR SINE MIR 5 223 -39 2558 147 15 11 chr12 56078850 56079319 -87707136 - L1MB7 LINE L1 0 6184 5714 268 178 0 68 chr12 56079852 56079925 -87706530 - L2 LINE L2 -83 3230 3163 348 259 200 29 chr12 56080141 56080311 -87706144 - MIR SINE MIR 0 262 64 2244 119 7 0 chr12 56080380 56080690 -87705765 - AluSq SINE Alu -1 312 1 2065 101 35 24 chr12 56081339 56081627 -87704828 + AluSp SINE Alu 1 291 -22 687 194 0 0 chr12 56081638 56081746 -87704709 - FLAM_A SINE Alu -34 108 1 692 224 89 17 chr12 56081759 56081938 -87704517 - MIR SINE MIR -64 198 7 313 234 180 18 chr12 56082508 56082619 -87703836 - L2 LINE L2 -2 3270 3142 305 240 198 62 chr12 56082970 56083212 -87703243 + LTR33 LTR ERVL 12 286 -235 307 306 24 8 chr12 56083265 56083389 -87703066 + LTR33 LTR ERVL 391 516 -5 321 93 0 0 chr12 56083728 56083771 -87702684 - MIR SINE MIR -62 146 104 671 176 125 60 chr12 56083889 56084105 -87702350 + MIR SINE MIR 23 252 -10 290 247 62 0 chr12 56084992 56085073 -87701382 + MIR3 SINE MIR 108 193 -15 558 295 101 0 chr12 56086206 56086413 -87700042 + L2 LINE L2 3085 3312 -1 2103 148 7 0 chr12 56086746 56087056 -87699399 - AluSx SINE Alu 0 312 1 658 326 77 35 chr12 56087056 56087289 -87699166 - L2 LINE L2 -7 3306 3052 2272 105 0 0 chr12 56087289 56087611 -87698844 + AluSp SINE Alu 1 322 0 658 326 77 35 chr12 56087611 56087710 -87698745 - L2 LINE L2 -261 3052 2959 462 231 189 7 chr12 56087851 56087994 -87698461 + MER5A DNA MER1_type 21 189 0 549 241 58 63 chr12 56088737 56088906 -87697549 + MIR SINE MIR 13 182 -80 1696 156 69 4 chr12 56088906 56089181 -87697274 + AluJb SINE Alu 1 293 -19 549 241 58 63 chr12 56089181 56089218 -87697237 + MIR SINE MIR 182 218 -44 276 250 0 0 chr12 56089238 56089286 -87697169 + MIR SINE MIR 37 84 -124 2234 120 3 3 chr12 56089317 56089625 -87696830 - AluSx SINE Alu -4 308 1 487 126 39 10 chr12 56089821 56089924 -87696531 - AluSg/x SINE Alu -4 306 201 2405 76 0 25 chr12 56089962 56090279 -87696176 + AluY SINE Alu 1 309 -2 510 196 162 64 chr12 56091905 56092033 -87694422 - MIR3 SINE MIR -5 203 52 2216 129 65 22 chr12 56092033 56092226 -87694229 - MLT1B LTR MaLR -2 388 205 2466 84 0 0 chr12 56092226 56092524 -87693931 - AluSq SINE Alu -15 298 1 2216 129 65 22 chr12 56092524 56092701 -87693754 - MLT1B LTR MaLR -185 205 2 510 196 162 64 chr12 56092701 56092745 -87693710 - MIR3 SINE MIR -156 52 14 196 306 41 31 chr12 56093040 56093138 -87693317 - L3b LINE CR1 -178 1405 1307 370 238 12 0 chr12 56093689 56093773 -87692682 + MIR3 SINE MIR 110 194 -14 272 257 43 0 chr12 56094877 56094947 -87691508 + MIR SINE MIR 77 149 -113 2491 91 0 0 chr12 56095125 56095433 -87691022 - AluY SINE Alu -2 309 2 2216 90 7 0 chr12 56096369 56096676 -87689779 - AluSg SINE Alu 0 309 1 195 184 0 0 chr12 56096842 56096880 -87689575 + CT-rich Low_complexity Low_complexity 3 40 0 2745 48 0 0 chr12 56097278 56097589 -87688866 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 56099809 56099838 -87686617 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 318 26 0 0 chr12 56099837 56099876 -87686579 + (GA)n Simple_repeat Simple_repeat 1 39 0 202 91 0 45 chr12 56099931 56099975 -87686480 + (TAA)n Simple_repeat Simple_repeat 1 42 0 318 50 0 0 chr12 56101014 56101054 -87685401 + (CA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr12 56101640 56101663 -87684792 + (GAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr12 56103332 56103355 -87683100 + (TTG)n Simple_repeat Simple_repeat 2 24 0 183 167 24 24 chr12 56103518 56103560 -87682895 + L2 LINE L2 3146 3187 -85 26 74 0 0 chr12 56104101 56104155 -87682300 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr12 56104200 56104223 -87682232 + AT_rich Low_complexity Low_complexity 1 23 0 249 293 25 96 chr12 56105092 56105249 -87681206 - MIR3 SINE MIR -23 185 40 388 276 160 0 chr12 56105580 56105736 -87680719 - MIR SINE MIR -12 250 70 331 301 66 30 chr12 56106396 56106562 -87679893 + MLT1J2 LTR MaLR 258 429 -21 2083 146 0 3 chr12 56106626 56106921 -87679534 + AluSx SINE Alu 1 294 -18 466 341 40 6 chr12 56106961 56107137 -87679318 - MIR SINE MIR -32 230 49 183 42 0 0 chr12 56107300 56107324 -87679131 + (A)n Simple_repeat Simple_repeat 1 24 0 657 143 54 9 chr12 56107324 56107436 -87679019 - FLAM_C SINE Alu -16 117 1 1684 178 0 18 chr12 56107508 56107789 -87678666 + AluJb SINE Alu 26 301 -11 2594 50 0 3 chr12 56107905 56108206 -87678249 - AluY SINE Alu -11 300 1 1958 89 57 7 chr12 56158902 56159184 -87627271 - AluSq SINE Alu -14 299 4 1889 107 14 17 chr12 56159196 56159487 -87626968 - AluSg SINE Alu -20 290 1 1219 73 12 0 chr12 56159524 56159688 -87626767 + AluY SINE Alu 135 300 -11 284 367 30 61 chr12 56159946 56160210 -87626245 + MIR SINE MIR 5 260 -2 1644 184 3 7 chr12 56160211 56160516 -87625939 - AluJo SINE Alu -8 304 1 268 328 85 40 chr12 56160580 56160781 -87625674 - L2 LINE L2 -636 2678 2469 2337 7 0 11 chr12 56160899 56161174 -87625281 - AluYa5 SINE Alu -22 289 18 420 198 37 0 chr12 56161367 56161448 -87625007 - MER96 DNA MER1_type? 0 175 92 * 423 208 0 0 chr12 56161376 56161453 -87625002 + MER96 DNA MER1_type? 13 89 -86 2033 129 14 0 chr12 56162191 56162485 -87623970 + AluSx SINE Alu 1 298 -14 2296 70 13 0 chr12 56162486 56162788 -87623667 + AluY SINE Alu 2 307 -4 425 245 88 0 chr12 56163632 56163836 -87622619 - AluSg/x SINE Alu -1 308 87 206 119 71 0 chr12 56164696 56164738 -87621717 + (CCGGG)n Simple_repeat Simple_repeat 1 45 0 213 226 0 0 chr12 56164831 56164884 -87621571 + G-rich Low_complexity Low_complexity 1 53 0 369 43 0 0 chr12 56166313 56166360 -87620095 + (CA)n Simple_repeat Simple_repeat 1 47 0 395 261 119 8 chr12 56166508 56166642 -87619813 + MIR SINE MIR 2 150 -112 235 143 0 61 chr12 56166636 56166685 -87619770 - L2 LINE L2 0 3313 3268 * 449 265 145 0 chr12 56166652 56166818 -87619637 - MIR SINE MIR -10 252 63 187 176 176 27 chr12 56169030 56169104 -87617351 + MIR SINE MIR 160 244 -18 270 246 16 66 chr12 56169454 56169637 -87616818 + (TCTCTG)n Simple_repeat Simple_repeat 5 178 0 333 0 0 0 chr12 56169710 56169747 -87616708 + (TG)n Simple_repeat Simple_repeat 2 38 0 792 201 0 31 chr12 56170834 56170993 -87615462 + MER45A DNA AcHobo 25 178 0 264 317 103 37 chr12 56170996 56171239 -87615216 - L2 LINE L2 -733 2581 2323 335 295 93 0 chr12 56171912 56172041 -87614414 - MIR3 SINE MIR -31 177 37 378 336 43 69 chr12 56175741 56176164 -87610291 - L1MC5 LINE L1 -122 7839 7428 327 333 71 75 chr12 56175820 56176306 -87610149 + L1ME LINE L1 754 4643 -1437 * 209 179 0 0 chr12 56177282 56177321 -87609134 + G-rich Low_complexity Low_complexity 1 39 0 2240 90 6 3 chr12 56177888 56178199 -87608256 - AluSx SINE Alu 0 312 1 699 227 77 27 chr12 56180237 56180457 -87605998 + MIR SINE MIR 5 235 -27 547 251 73 42 chr12 56182271 56182330 -87604125 + MER117 DNA MER1_type 1 57 -140 1947 154 0 7 chr12 56182330 56182636 -87603819 - AluJo SINE Alu -8 304 1 547 251 73 42 chr12 56182636 56182767 -87603688 + MER117 DNA MER1_type 57 197 0 1985 142 7 0 chr12 56183552 56183847 -87602608 - AluJo SINE Alu -15 297 1 670 337 74 17 chr12 56183854 56184151 -87602304 + L2 LINE L2 2943 3256 -16 189 0 0 0 chr12 56184468 56184489 -87601966 + (TC)n Simple_repeat Simple_repeat 2 22 0 938 207 10 55 chr12 56184489 56184779 -87601676 - AluJo SINE Alu -9 303 27 26 0 0 0 chr12 56184908 56184934 -87601521 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr12 56186353 56186373 -87600082 + (TG)n Simple_repeat Simple_repeat 2 21 0 253 256 208 0 chr12 56187415 56187540 -87598915 - MIR3 SINE MIR -30 178 28 242 324 0 0 chr12 56190200 56190274 -87596181 + C-rich Low_complexity Low_complexity 1 74 0 199 299 157 30 chr12 56190448 56190582 -87595873 + L2 LINE L2 2890 3040 -232 325 339 134 0 chr12 56190732 56190844 -87595611 + L2 LINE L2 3126 3252 -20 2304 65 0 40 chr12 56190847 56191170 -87595285 - AluY SINE Alu -1 310 1 609 276 50 36 chr12 56191255 56191476 -87594979 + MIR SINE MIR 32 255 -7 39 0 0 0 chr12 56191628 56191667 -87594788 + AT_rich Low_complexity Low_complexity 1 39 0 1899 110 7 11 chr12 56191678 56191988 -87594467 + AluSg SINE Alu 1 309 0 423 312 57 46 chr12 56192035 56192407 -87594048 + L2 LINE L2 2376 2751 -563 2192 97 3 0 chr12 56192407 56192707 -87593748 + AluSx SINE Alu 1 301 -11 404 229 0 0 chr12 56192963 56193046 -87593409 + MIR SINE MIR 180 262 0 351 44 0 0 chr12 56197426 56197471 -87588984 + (CA)n Simple_repeat Simple_repeat 1 45 0 341 263 121 0 chr12 56197619 56197718 -87588737 + MIR SINE MIR 2 112 -150 220 217 0 0 chr12 56198242 56198288 -87588167 + GA-rich Low_complexity Low_complexity 4 49 0 189 0 0 0 chr12 56198482 56198503 -87587952 + (TC)n Simple_repeat Simple_repeat 2 22 0 2070 135 0 22 chr12 56198503 56198814 -87587641 - AluJo SINE Alu -8 304 1 27 0 0 0 chr12 56198907 56198934 -87587521 + AT_rich Low_complexity Low_complexity 1 27 0 193 311 235 8 chr12 56199722 56199841 -87586614 - L2 LINE L2 0 3313 3168 560 299 131 23 chr12 56199857 56200201 -87586254 + L2 LINE L2 2933 3313 0 204 301 165 10 chr12 56200244 56200347 -87586108 - L2 LINE L2 -224 3048 2930 2293 93 0 22 chr12 56202083 56202395 -87584060 + AluSg1 SINE Alu 1 305 -4 337 298 76 70 chr12 56202532 56202703 -87583752 - L1ME LINE L1 -5174 896 725 302 306 78 87 chr12 56202533 56202752 -87583703 + L1M4c LINE L1 1856 2072 -4312 * 104 123 0 0 chr12 56202752 56202890 -87583565 + AT_rich Low_complexity Low_complexity 1 138 0 208 333 44 59 chr12 56202891 56203026 -87583429 + A-rich Low_complexity Low_complexity 3 135 0 508 193 76 42 chr12 56203059 56203214 -87583241 - MIR SINE MIR -35 173 17 389 255 38 9 chr12 56203293 56203399 -87583056 + MIR SINE MIR 42 150 -112 2330 101 0 3 chr12 56203417 56203725 -87582730 - AluSc SINE Alu -2 307 1 360 110 5 32 chr12 56203725 56203795 -87582660 - AluSq/x SINE Alu -175 128 86 227 261 0 0 chr12 56203831 56203877 -87582578 + MIR SINE MIR 216 261 -1 186 295 119 22 chr12 56203908 56204135 -87582320 - L2 LINE L2 -1134 2180 1932 1261 215 8 23 chr12 56204157 56204413 -87582042 + MIR SINE MIR 3 254 -8 213 226 0 0 chr12 56205340 56205393 -87581062 + C-rich Low_complexity Low_complexity 1 53 0 659 108 108 0 chr12 56205633 56205735 -87580720 - AluSq/x SINE Alu -198 114 2 2130 123 0 13 chr12 56205802 56206102 -87580353 - AluSx SINE Alu -16 296 1 2431 97 0 3 chr12 56206994 56207303 -87579152 - AluSq SINE Alu -5 308 1 1510 188 8 4 chr12 56207443 56207698 -87578757 + AluJo SINE Alu 37 292 -20 1927 85 4 4 chr12 56207811 56208059 -87578396 - AluY SINE Alu -20 291 44 2109 80 15 94 chr12 56208071 56208410 -87578045 - AluSx SINE Alu 0 312 1 2440 92 0 0 chr12 56208481 56208785 -87577670 - AluSq SINE Alu -9 304 1 1572 115 5 0 chr12 56210276 56210485 -87575970 + AluSc SINE Alu 9 218 -91 584 151 27 75 chr12 56211432 56211578 -87574877 - MIR SINE MIR -64 198 60 1532 132 8 37 chr12 56212675 56212918 -87573537 + AluJo SINE Alu 1 236 -76 2347 89 10 0 chr12 56212929 56213233 -87573222 + AluSg1 SINE Alu 1 307 -2 2510 45 0 0 chr12 56214367 56214653 -87571802 + AluY SINE Alu 9 294 -17 184 296 74 0 chr12 56215320 56215401 -87571054 + L2 LINE L2 3184 3270 -43 2289 114 0 0 chr12 56217082 56217379 -87569076 + AluSc SINE Alu 1 297 -12 22 0 0 0 chr12 56217720 56217742 -87568713 + AT_rich Low_complexity Low_complexity 1 22 0 916 142 0 14 chr12 56219557 56219698 -87566757 - FLAM_C SINE Alu -4 139 1 349 175 39 117 chr12 56220242 56220345 -87566110 + MER5B DNA MER1_type 1 95 -83 2230 110 17 0 chr12 56220345 56220644 -87565811 - AluY SINE Alu -7 304 1 2052 115 7 46 chr12 56221444 56221590 -87564865 + AluSx SINE Alu 1 130 -182 2193 119 0 7 chr12 56221590 56221892 -87564563 + AluSx SINE Alu 1 300 -12 2052 115 7 46 chr12 56221892 56222049 -87564406 + AluSx SINE Alu 130 292 -20 1311 193 89 21 chr12 56222185 56222465 -87563990 - AluJo SINE Alu -13 299 1 533 311 125 43 chr12 56223314 56223461 -87562994 - L2 LINE L2 0 3272 3139 2431 98 0 13 chr12 56223461 56223777 -87562678 + AluSx SINE Alu 1 312 0 533 311 125 43 chr12 56223777 56223957 -87562498 - L2 LINE L2 -133 3139 2918 316 216 30 30 chr12 56225330 56225497 -87560958 + CT-rich Low_complexity Low_complexity 1 167 0 25 31 0 0 chr12 56225564 56225596 -87560859 + GC_rich Low_complexity Low_complexity 1 32 0 990 197 18 53 chr12 56225726 56225954 -87560501 + AluJo SINE Alu 82 301 -11 2232 87 0 66 chr12 56225983 56226316 -87560139 - AluY SINE Alu 0 311 1 2352 100 3 0 chr12 56226316 56226615 -87559840 - AluSp SINE Alu -12 301 1 2373 104 0 3 chr12 56226620 56226929 -87559526 - AluSx SINE Alu -3 309 2 2166 102 0 3 chr12 56226938 56227247 -87559208 - AluSg SINE Alu 0 308 1 1665 200 7 0 chr12 56227253 56227553 -87558902 - AluJb SINE Alu -10 302 1 478 204 10 0 chr12 56227576 56227674 -87558781 - MER58 DNA MER1_type -6 2414 2316 2278 92 3 29 chr12 56227705 56228020 -87558435 - AluSx SINE Alu -5 307 1 306 268 41 21 chr12 56228028 56228125 -87558330 - MER58 DNA MER1_type -2321 99 1 424 273 115 29 chr12 56228147 56228286 -87558169 + L2 LINE L2 3122 3272 0 21 0 0 0 chr12 56230976 56230997 -87555458 + AT_rich Low_complexity Low_complexity 1 21 0 2254 108 0 43 chr12 56231651 56231788 -87554667 + AluSx SINE Alu 1 142 -170 2379 105 0 0 chr12 56231788 56232101 -87554354 + AluSp SINE Alu 1 313 0 2254 108 0 43 chr12 56232101 56232288 -87554167 + AluSx SINE Alu 142 311 -1 339 283 26 9 chr12 56232975 56233088 -87553367 + MIR SINE MIR 34 148 -60 655 286 48 5 chr12 56233101 56233290 -87553165 - MIR SINE MIR -25 237 41 199 291 35 35 chr12 56233284 56233370 -87553085 + MIR3 SINE MIR 116 201 -7 * 181 267 0 0 chr12 56233455 56233500 -87552955 + L3b LINE CR1 1342 1386 -197 254 262 0 48 chr12 56233817 56233943 -87552512 + CT-rich Low_complexity Low_complexity 1 120 0 184 171 0 57 chr12 56234306 56234376 -87552079 + C-rich Low_complexity Low_complexity 4 69 0 216 338 21 7 chr12 56234542 56234687 -87551768 + GA-rich Low_complexity Low_complexity 3 149 0 309 26 0 0 chr12 56238103 56238141 -87548314 + (CA)n Simple_repeat Simple_repeat 1 38 0 285 349 0 7 chr12 56238242 56238391 -87548064 + CT-rich Low_complexity Low_complexity 1 148 0 2068 99 0 41 chr12 56238713 56239030 -87547425 + AluSx SINE Alu 1 305 0 2231 128 0 6 chr12 56239041 56239353 -87547102 + AluJb SINE Alu 1 310 -2 2330 107 0 3 chr12 56243244 56243542 -87542913 - AluSg SINE Alu -13 297 1 2165 114 13 0 chr12 56245128 56245427 -87541028 + AluSx SINE Alu 1 303 -9 1941 88 107 0 chr12 56245546 56245818 -87540637 + AluY SINE Alu 1 301 -10 217 316 9 70 chr12 56248481 56248595 -87537860 - L3b LINE CR1 -167 1416 1310 2378 99 7 0 chr12 56248601 56248905 -87537550 - AluSq SINE Alu -7 306 1 2296 47 47 0 chr12 56249470 56249749 -87536706 + AluSg SINE Alu 1 292 -18 1035 65 8 0 chr12 56249884 56250008 -87536447 + AluSq/x SINE Alu 2 126 -186 2166 113 3 16 chr12 56250009 56250320 -87536135 + AluSg1 SINE Alu 1 307 -2 517 267 72 5 chr12 56250451 56250633 -87535822 - MIR SINE MIR -49 213 20 183 290 129 43 chr12 56251181 56251274 -87535181 - MIR SINE MIR -62 200 100 669 164 8 31 chr12 56251294 56251422 -87535033 + AluSq/x SINE Alu 2 126 -186 1192 312 30 22 chr12 56251647 56251832 -87534623 + L2 LINE L2 1053 1235 -2079 2300 80 14 0 chr12 56251832 56252119 -87534336 + AluSx SINE Alu 5 295 -17 1192 312 30 22 chr12 56252119 56252394 -87534061 + L2 LINE L2 1235 1520 -1794 2421 110 0 0 chr12 56252394 56252704 -87533751 + AluSx SINE Alu 1 310 -2 1192 312 30 22 chr12 56252704 56252735 -87533720 + L2 LINE L2 1520 1549 -1765 1585 170 98 0 chr12 56253073 56253350 -87533105 + AluJo SINE Alu 3 306 -6 2244 84 11 0 chr12 56253353 56253640 -87532815 + AluSp SINE Alu 2 291 -22 2040 140 13 3 chr12 56254045 56254345 -87532110 + AluSx SINE Alu 1 303 -9 2051 158 0 0 chr12 56254494 56254797 -87531658 + AluSx SINE Alu 1 303 -9 1935 179 0 7 chr12 56254805 56255112 -87531343 + AluJb SINE Alu 1 305 -7 2439 103 0 0 chr12 56256770 56257080 -87529375 - AluSg SINE Alu 0 310 1 193 333 16 0 chr12 56257211 56257274 -87529181 - L2 LINE L2 -2 3311 3248 1133 153 0 0 chr12 56258655 56258818 -87527637 - AluJb SINE Alu -7 305 143 2031 123 0 47 chr12 56259265 56259582 -87526873 + AluSq SINE Alu 1 302 -11 1344 94 6 0 chr12 56259582 56259752 -87526703 + AluSq SINE Alu 134 304 -9 2382 73 7 17 chr12 56262329 56262631 -87523824 + AluSx SINE Alu 4 302 -10 822 224 0 0 chr12 56262902 56263058 -87523397 + MIR3 SINE MIR 46 201 -7 1845 156 0 7 chr12 56263306 56263581 -87522874 + AluJb SINE Alu 33 305 -7 2241 109 0 3 chr12 56263583 56263876 -87522579 + AluSq SINE Alu 1 292 -21 1032 117 32 142 chr12 56263876 56263930 -87522525 + L1M3 LINE L1 5359 5417 -763 2550 51 0 3 chr12 56263930 56264226 -87522229 + AluY SINE Alu 1 295 -16 1032 117 32 142 chr12 56264226 56264452 -87522003 + L1M3 LINE L1 5417 5608 -572 671 218 8 0 chr12 56264453 56264577 -87521878 + AluJo/FLAM SINE Alu 2 126 -186 649 176 0 0 chr12 56264576 56264678 -87521777 - AluSg/x SINE Alu -14 295 194 * 923 118 7 7 chr12 56264828 56264964 -87521491 + AluSp/q SINE Alu 170 305 -8 2235 115 0 3 chr12 56265181 56265494 -87520961 + AluSq SINE Alu 1 312 -1 658 200 0 44 chr12 56265755 56265890 -87520565 + AluJo/FLAM SINE Alu 1 129 -173 2389 89 0 3 chr12 56265893 56266197 -87520258 + AluSg SINE Alu 5 307 -3 22 35 0 0 chr12 56266201 56266230 -87520225 + AT_rich Low_complexity Low_complexity 1 29 0 1839 162 55 3 chr12 56266231 56266521 -87519934 - 7SLRNA srpRNA srpRNA -14 306 2 229 212 15 61 chr12 56266964 56267030 -87519425 + MER20B DNA MER1_type 114 176 -607 875 196 82 5 chr12 56267163 56267382 -87519073 + MER33 DNA MER1_type 1 236 -88 886 147 0 0 chr12 56267382 56267511 -87518944 + AluJb SINE Alu 1 129 -183 2084 110 0 0 chr12 56267511 56267775 -87518680 - AluSq SINE Alu -49 264 1 754 61 9 70 chr12 56267920 56268034 -87518421 + AluY SINE Alu 2 108 -203 180 111 0 0 chr12 56268158 56268185 -87518270 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2395 91 3 0 chr12 56268706 56269004 -87517451 + AluSp SINE Alu 7 305 -8 242 343 82 8 chr12 56269107 56269241 -87517214 - MER5A DNA MER1_type 0 189 46 2293 127 0 0 chr12 56269241 56269541 -87516914 + AluSx SINE Alu 1 300 -12 209 220 17 17 chr12 56270389 56270448 -87516007 + GA-rich Low_complexity Low_complexity 2 60 0 1574 92 0 0 chr12 56273094 56273325 -87513130 - AluSg/x SINE Alu 0 319 89 1975 155 0 10 chr12 56273400 56273697 -87512758 + AluJb SINE Alu 1 294 -18 2369 109 0 0 chr12 56273699 56274010 -87512445 + AluSx SINE Alu 1 311 -1 2383 113 0 0 chr12 56274029 56274338 -87512117 + AluSx SINE Alu 1 309 -3 1587 165 66 11 chr12 56274484 56274757 -87511698 + AluJo SINE Alu 3 290 -22 2124 145 0 0 chr12 56274781 56275077 -87511378 + AluSx SINE Alu 7 302 -10 2034 215 125 41 chr12 56275333 56275651 -87510804 - L1M4 LINE L1 -2786 3360 3070 1615 186 24 0 chr12 56275651 56275941 -87510514 - AluJo SINE Alu -15 297 1 2034 215 125 41 chr12 56275941 56276138 -87510317 - L1M4 LINE L1 -3076 3070 2891 1741 177 7 21 chr12 56276138 56276426 -87510029 + AluJo SINE Alu 1 284 -28 2034 215 125 41 chr12 56276426 56276686 -87509769 - L1M4 LINE L1 -3255 2891 2654 2491 82 7 0 chr12 56276686 56276992 -87509463 - AluSx SINE Alu -4 308 1 2034 215 125 41 chr12 56276992 56277097 -87509358 - L1M4 LINE L1 -3492 2654 2404 207 222 173 12 chr12 56277356 56277437 -87509018 - MIR SINE MIR -75 187 94 584 298 13 0 chr12 56278176 56278327 -87508128 - MIR3 SINE MIR -11 197 45 2252 102 0 16 chr12 56278899 56279184 -87507271 + AluY SINE Alu 1 282 -29 198 0 0 0 chr12 56279184 56279206 -87507249 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2252 102 0 16 chr12 56279206 56279225 -87507230 + AluY SINE Alu 282 300 -11 837 152 25 0 chr12 56279226 56279384 -87507071 - L1MB4 LINE L1 -166 6014 5853 228 284 14 0 chr12 56279534 56279608 -87506847 + L1MC/D LINE L1 5541 5615 -744 2248 84 0 10 chr12 56279765 56280064 -87506391 + AluSp SINE Alu 1 296 -17 210 335 45 39 chr12 56280072 56280227 -87506228 - MIR3 SINE MIR -34 174 19 346 303 22 0 chr12 56280510 56280611 -87505844 + MIR SINE MIR 68 171 -63 2116 105 7 3 chr12 56280629 56280915 -87505540 - AluSg SINE Alu -23 287 1 2250 91 7 23 chr12 56280920 56281228 -87505227 - AluSq SINE Alu -10 303 1 2464 88 0 0 chr12 56281238 56281543 -87504912 - AluY SINE Alu -5 306 2 1466 96 25 0 chr12 56282011 56282079 -87504376 - AluSq SINE Alu -110 203 138 2402 94 3 0 chr12 56282079 56282388 -87504067 - AluY SINE Alu -1 310 1 1466 96 25 0 chr12 56282388 56282517 -87503938 - AluSq SINE Alu -175 138 1 349 238 12 12 chr12 56282536 56282620 -87503835 + MIR SINE MIR 20 103 -159 244 211 0 53 chr12 56282620 56282696 -87503759 - MER116 DNA Mariner -1 79 8 348 269 123 39 chr12 56282700 56282830 -87503625 + MIR SINE MIR 116 256 -6 2373 99 0 0 chr12 56283528 56283830 -87502625 + AluSx SINE Alu 1 302 -10 1806 100 119 8 chr12 56284849 56285109 -87501346 + AluSg1 SINE Alu 1 289 -20 393 58 0 0 chr12 56285827 56285879 -87500576 + (CA)n Simple_repeat Simple_repeat 2 53 0 1429 172 12 12 chr12 56286242 56286486 -87499969 + AluJo SINE Alu 42 285 -27 779 161 73 0 chr12 56286576 56286700 -87499755 - FLAM_C SINE Alu 0 133 1 343 274 124 0 chr12 56287050 56287163 -87499292 + L2 LINE L2 3181 3307 -6 1229 94 0 18 chr12 56288844 56289014 -87497441 + AluSg/x SINE Alu 140 306 -6 2311 77 0 64 chr12 56290469 56290603 -87495852 + AluSp SINE Alu 3 144 -169 2444 62 0 3 chr12 56290603 56290891 -87495564 + AluY SINE Alu 1 287 -24 2311 77 0 64 chr12 56290891 56291083 -87495372 + AluSp SINE Alu 144 308 -5 704 85 16 31 chr12 56291098 56291227 -87495228 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 238 286 0 14 chr12 56293667 56293737 -87492718 + MIR SINE MIR 143 211 -51 2289 110 0 0 chr12 56293865 56294166 -87492289 + AluSx SINE Alu 1 301 -11 482 175 0 0 chr12 56294749 56294829 -87491626 - AluJ/FLAM SINE Alu -222 90 11 231 61 0 0 chr12 56294842 56294875 -87491580 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 1986 117 0 7 chr12 56294885 56295159 -87491296 - AluSx SINE Alu -39 273 2 2292 98 0 16 chr12 56295171 56295342 -87491113 - AluSg SINE Alu -10 300 135 1561 113 82 39 chr12 56295342 56295624 -87490831 - AluSg SINE Alu -16 294 1 2292 98 0 16 chr12 56295624 56295757 -87490698 - AluSg SINE Alu -175 135 1 1832 154 56 0 chr12 56299140 56299426 -87487029 + AluSp SINE Alu 1 302 -11 2305 139 19 3 chr12 56299626 56299985 -87486470 - MER47A DNA MER2_type -1 365 1 2652 40 0 0 chr12 56302032 56302331 -87484124 + AluY SINE Alu 1 299 -12 240 167 44 3 chr12 56302601 56302658 -87483797 - AluS SINE Alu -244 59 15 1851 133 42 3 chr12 56302658 56302943 -87483512 - AluSg SINE Alu -14 296 1 240 167 44 3 chr12 56302943 56302957 -87483498 - AluS SINE Alu -288 15 3 1559 100 0 35 chr12 56303078 56303142 -87483313 + AluSq SINE Alu 72 137 -176 2283 82 20 7 chr12 56303142 56303461 -87482994 + AluSp SINE Alu 1 313 0 1559 100 0 35 chr12 56303461 56303627 -87482828 + AluSq SINE Alu 137 294 -19 2336 97 0 3 chr12 56304137 56304435 -87482020 + AluSg SINE Alu 6 302 -8 2230 121 3 3 chr12 56305083 56305396 -87481059 + AluSp SINE Alu 1 313 0 1102 169 6 0 chr12 56305396 56305573 -87480882 + AluSg/x SINE Alu 124 301 -9 2585 40 13 0 chr12 56305666 56305968 -87480487 + AluY SINE Alu 1 306 -5 1050 136 39 0 chr12 56305970 56306125 -87480330 + AluSg/x SINE Alu 134 294 -16 22 0 0 0 chr12 56306400 56306422 -87480033 + AT_rich Low_complexity Low_complexity 1 22 0 982 190 25 36 chr12 56306795 56307069 -87479386 + L1MB7 LINE L1 5636 5906 -278 281 256 68 34 chr12 56307128 56307245 -87479210 + MIR SINE MIR 32 152 -110 2162 114 3 0 chr12 56309998 56310287 -87476168 - AluSx SINE Alu -22 290 1 332 208 135 31 chr12 56310298 56310394 -87476061 - MLT1D LTR MaLR -399 106 1 2203 91 17 10 chr12 56318106 56318403 -87468052 - AluSg SINE Alu -11 299 1 2269 96 0 10 chr12 56318403 56318696 -87467759 - AluSx SINE Alu -16 296 7 1781 158 0 0 chr12 56319308 56319574 -87466881 - AluSq SINE Alu -47 266 1 2214 98 10 13 chr12 56319585 56319890 -87466565 - AluYa5 SINE Alu -6 305 2 1925 140 13 27 chr12 56320176 56320476 -87465979 + AluJo SINE Alu 1 296 -16 1621 108 0 0 chr12 56320529 56320741 -87465714 + AluSg/x SINE Alu 85 296 -16 1048 182 0 0 chr12 56321301 56321482 -87464973 + FRAM SINE Alu 1 173 -3 2323 92 10 0 chr12 56321917 56322210 -87464245 + AluSq SINE Alu 5 300 -13 839 113 16 8 chr12 56322368 56322492 -87463963 + AluY SINE Alu 1 125 -186 2010 98 6 85 chr12 56322633 56322951 -87463504 - AluSx SINE Alu -19 293 1 23 0 0 0 chr12 56322959 56322982 -87463473 + AT_rich Low_complexity Low_complexity 1 23 0 909 127 14 21 chr12 56322984 56323126 -87463329 - AluJb SINE Alu -47 265 125 761 158 26 0 chr12 56323388 56323502 -87462953 - FLAM_A SINE Alu -16 117 1 252 240 0 0 chr12 56323553 56323603 -87462852 + MIR3 SINE MIR 111 160 -48 799 133 147 0 chr12 56325202 56325345 -87461110 - AluSg/x SINE Alu -29 280 117 2257 106 7 0 chr12 56325520 56325813 -87460642 - AluSq SINE Alu -18 295 1 2003 133 7 10 chr12 56326212 56326513 -87459942 - AluSq SINE Alu -13 300 1 180 0 0 0 chr12 56326541 56326561 -87459894 + (T)n Simple_repeat Simple_repeat 1 20 0 2415 96 0 0 chr12 56327215 56327517 -87458938 - AluSg SINE Alu -8 302 1 274 275 0 0 chr12 56327517 56327597 -87458858 - L1M4 LINE L1 -2618 3528 3449 356 181 257 29 chr12 56327601 56327706 -87458749 - FLAM_C SINE Alu 0 133 5 617 241 56 20 chr12 56329739 56329934 -87456521 + L2 LINE L2 3109 3310 -3 26 0 0 0 chr12 56330421 56330447 -87456008 + AT_rich Low_complexity Low_complexity 1 26 0 557 233 160 24 chr12 56330555 56330761 -87455694 + MIR SINE MIR 20 253 -9 463 256 48 77 chr12 56330984 56331191 -87455264 - MIR SINE MIR -48 214 14 2178 96 55 0 chr12 56332075 56332366 -87454089 + AluSg SINE Alu 1 307 -3 348 127 0 0 chr12 56333426 56333481 -87452974 + (CA)n Simple_repeat Simple_repeat 2 56 0 2432 79 0 0 chr12 56333491 56333782 -87452673 - AluSg SINE Alu -16 294 4 1207 154 82 0 chr12 56333978 56334173 -87452282 - AluJb SINE Alu -13 299 89 1670 179 0 41 chr12 56334173 56334356 -87452099 - AluJb SINE Alu -6 306 140 2241 130 0 0 chr12 56334356 56334657 -87451798 - AluSx SINE Alu -11 301 1 1670 179 0 41 chr12 56334657 56334792 -87451663 - AluJb SINE Alu -172 140 1 835 256 103 0 chr12 56334807 56335010 -87451445 + MIR SINE MIR 32 255 -7 316 238 119 40 chr12 56335030 56335156 -87451299 + L2 LINE L2 3137 3272 0 204 307 0 74 chr12 56336899 56337075 -87449380 + G-rich Low_complexity Low_complexity 5 167 0 2255 72 4 4 chr12 56338193 56338494 -87447961 + AluY SINE Alu 2 302 0 2499 87 3 0 chr12 56338494 56338805 -87447650 + AluSp SINE Alu 1 312 -1 301 363 40 0 chr12 56339076 56339200 -87447255 - MIR3 SINE MIR -46 162 34 257 329 68 37 chr12 56339499 56339660 -87446795 + MIR3 SINE MIR 35 200 -8 2255 104 0 19 chr12 56339681 56339997 -87446458 - AluSx SINE Alu -2 310 1 252 272 158 66 chr12 56340239 56340467 -87445988 - MIR SINE MIR -12 250 2 213 259 0 17 chr12 56343853 56343911 -87442544 + (CGG)n Simple_repeat Simple_repeat 2 58 0 2171 123 7 10 chr12 56344922 56345232 -87441223 + AluSx SINE Alu 1 309 -3 590 259 72 6 chr12 56346420 56346586 -87439869 - MIR3 SINE MIR -29 179 3 376 321 71 18 chr12 56346990 56347214 -87439241 - MIR SINE MIR -14 248 13 2258 119 0 7 chr12 56347562 56347872 -87438583 + AluSg SINE Alu 1 308 -2 2308 104 0 3 chr12 56348391 56348699 -87437756 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr12 56348937 56348965 -87437490 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 200 188 0 42 chr12 56350875 56350923 -87435532 + GA-rich Low_complexity Low_complexity 4 49 0 235 294 5 75 chr12 56351177 56351417 -87435038 + GA-rich Low_complexity Low_complexity 1 223 0 315 0 0 0 chr12 56352442 56352477 -87433978 + (TG)n Simple_repeat Simple_repeat 1 35 0 645 184 177 6 chr12 56354412 56354570 -87431885 - MIR SINE MIR -44 218 34 897 127 0 8 chr12 56354774 56354900 -87431555 - FLAM_C SINE Alu -17 126 2 2004 126 10 10 chr12 56354929 56355238 -87431217 + AluSx SINE Alu 1 309 -3 260 367 18 0 chr12 56355588 56355697 -87430758 + MIR3 SINE MIR 91 201 -7 2503 71 3 3 chr12 56355925 56356235 -87430220 + AluSg SINE Alu 1 310 0 279 273 13 0 chr12 56356366 56356443 -87430012 - MIR SINE MIR -26 236 159 230 354 0 0 chr12 56358999 56359078 -87427377 - L2 LINE L2 -8 3305 3227 * 1109 173 16 68 chr12 56359075 56359324 -87427131 + MIR SINE MIR 6 241 -21 441 90 0 0 chr12 56359534 56359601 -87426854 + (TG)n Simple_repeat Simple_repeat 1 67 0 357 347 100 16 chr12 56359644 56359964 -87426491 - L2 LINE L2 -341 2973 2627 840 323 171 9 chr12 56359973 56360627 -87425828 - L2 LINE L2 -842 2472 1713 297 0 0 0 chr12 56360747 56360780 -87425675 + (TG)n Simple_repeat Simple_repeat 2 34 0 638 230 52 26 chr12 56360888 56361079 -87425376 - L1MC4a LINE L1 -1942 5866 5671 467 92 35 11 chr12 56361092 56361179 -87425276 - AluSp/q SINE Alu -6 307 219 541 195 128 40 chr12 56361283 56361432 -87425023 + AluJo SINE Alu 56 217 -95 186 328 16 16 chr12 56361859 56361923 -87424532 + MIR SINE MIR 23 86 -122 258 206 48 0 chr12 56362263 56362326 -87424129 + MIR3 SINE MIR 116 181 -27 2607 53 3 0 chr12 56362326 56362626 -87423829 - AluY SINE Alu -9 302 2 2138 129 14 0 chr12 56362627 56362921 -87423534 - AluSx SINE Alu -14 298 1 2134 121 3 16 chr12 56364672 56364987 -87421468 - AluSx SINE Alu -1 311 1 2214 95 10 0 chr12 56365137 56365432 -87421023 + AluSc SINE Alu 6 303 -6 1987 137 7 7 chr12 56365643 56365942 -87420513 - AluSx SINE Alu -9 303 5 2253 114 3 0 chr12 56366577 56366883 -87419572 + AluSp SINE Alu 1 307 -6 2199 92 3 3 chr12 56368375 56368685 -87417770 + AluSx SINE Alu 1 310 0 885 130 8 0 chr12 56369028 56369151 -87417304 - FLAM_C SINE Alu -9 124 1 982 190 0 0 chr12 56369159 56369317 -87417138 - FAM SINE Alu -18 167 10 209 224 0 0 chr12 56369629 56369678 -87416777 - L2 LINE L2 0 3313 3265 2256 97 10 10 chr12 56369931 56370239 -87416216 - AluSx SINE Alu -4 308 1 1025 138 23 29 chr12 56371150 56371324 -87415131 - AluJo SINE Alu -139 173 1 929 186 0 18 chr12 56371350 56371517 -87414938 - AluJb SINE Alu -16 296 133 780 159 46 33 chr12 56371603 56371754 -87414701 + BC200 scRNA scRNA 9 161 -39 2006 132 0 0 chr12 56372280 56372560 -87413895 - AluSx SINE Alu -10 302 23 269 211 0 42 chr12 56372566 56372637 -87413818 - MER94 DNA DNA -62 72 5 2455 89 0 0 chr12 56372711 56373014 -87413441 + AluSg SINE Alu 1 303 -7 1637 178 68 0 chr12 56373145 56373437 -87413018 + AluJo SINE Alu 1 312 0 2885 7 0 0 chr12 56373949 56374255 -87412200 + AluY SINE Alu 1 306 -5 26 0 0 0 chr12 56374619 56374645 -87411810 + AT_rich Low_complexity Low_complexity 1 26 0 1580 169 46 28 chr12 56374648 56374932 -87411523 - AluJo SINE Alu -23 289 1 23 33 0 0 chr12 56374935 56374965 -87411490 + AT_rich Low_complexity Low_complexity 1 30 0 1621 169 23 20 chr12 56375156 56375458 -87410997 - AluJo SINE Alu -7 305 3 1409 94 275 0 chr12 56376332 56376565 -87409890 + AluSx SINE Alu 1 297 -5 352 237 161 39 chr12 56376804 56377111 -87409344 + MLT1J2 LTR MaLR 71 443 -7 1103 138 5 21 chr12 56377210 56377399 -87409056 + L1PA16 LINE L1 5800 5985 -181 22 0 0 0 chr12 56377451 56377473 -87408982 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 56377559 56377580 -87408875 + GC_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr12 56377603 56377636 -87408819 + (A)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr12 56377696 56377722 -87408733 + (G)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 56377772 56377804 -87408651 + GC_rich Low_complexity Low_complexity 1 32 0 24 61 0 0 chr12 56377825 56377858 -87408597 + AT_rich Low_complexity Low_complexity 1 33 0 2248 107 3 0 chr12 56378664 56378962 -87407493 - AluSg SINE Alu -11 299 1 1890 156 0 3 chr12 56378981 56379292 -87407163 - AluSx SINE Alu 0 311 2 2130 126 3 7 chr12 56379321 56379631 -87406824 + AluSx SINE Alu 1 309 -3 260 367 18 0 chr12 56379980 56380089 -87406366 + MIR3 SINE MIR 91 201 -7 2538 71 3 0 chr12 56380317 56380626 -87405829 + AluSg SINE Alu 1 310 0 258 286 13 0 chr12 56380763 56380840 -87405615 - MIR SINE MIR -26 236 159 198 0 0 0 chr12 56383171 56383193 -87403262 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2052 82 10 17 chr12 56383198 56383491 -87402964 - AluY SINE Alu -20 291 1 2106 125 0 0 chr12 56383510 56383819 -87402636 - AluSx SINE Alu 0 311 3 2266 95 7 0 chr12 56384016 56384311 -87402144 - AluSg SINE Alu -13 297 1 530 258 101 6 chr12 56384373 56384551 -87401904 + MIR SINE MIR 32 226 -36 1009 92 0 7 chr12 56384630 56384771 -87401684 - AluSg/x SINE Alu -11 301 162 302 335 155 0 chr12 56384792 56384986 -87401469 + L2 LINE L2 3008 3231 -41 731 266 62 72 chr12 56385232 56385552 -87400903 + MLT1J LTR MaLR 1 317 -194 2117 221 77 24 chr12 56385925 56386432 -87400023 + MLT1F LTR MaLR 1 534 -8 1641 191 0 7 chr12 56387120 56387268 -87399187 - AluJo SINE Alu -31 281 134 2199 114 3 29 chr12 56387268 56387584 -87398871 - AluSq SINE Alu -5 308 1 1641 191 0 7 chr12 56387584 56387718 -87398737 - AluJo SINE Alu -178 134 1 21 57 0 0 chr12 56387957 56387992 -87398463 + GC_rich Low_complexity Low_complexity 1 35 0 481 227 159 12 chr12 56388312 56388475 -87397980 - MIR3 SINE MIR -18 190 4 2098 115 0 3 chr12 56389583 56389925 -87396530 + AluSx SINE Alu 1 341 0 2469 65 7 7 chr12 56390743 56391050 -87395405 + AluY SINE Alu 1 307 -4 2241 72 23 16 chr12 56391527 56391832 -87394623 + AluY SINE Alu 1 307 -4 2149 128 3 0 chr12 56391936 56392233 -87394222 - AluSq SINE Alu -15 298 1 363 322 28 39 chr12 56392379 56392559 -87393896 - MER5A DNA MER1_type -11 178 1 361 316 0 0 chr12 56393774 56393891 -87392564 - MIR3 SINE MIR -7 201 85 1678 160 24 28 chr12 56393964 56394252 -87392203 - AluJo SINE Alu -23 289 3 951 52 0 0 chr12 56394449 56394564 -87391891 - L1PA3 LINE L1 0 6155 6041 416 276 61 0 chr12 56394844 56395007 -87391448 + LTR67 LTR ERVL 385 557 0 321 51 0 0 chr12 56395066 56395105 -87391350 + AluY SINE Alu 1 39 -263 2219 65 33 0 chr12 56395125 56395401 -87391054 + AluY SINE Alu 16 300 -11 229 371 32 55 chr12 56395673 56395926 -87390529 + MIR SINE MIR 16 262 0 1775 185 0 3 chr12 56395927 56396230 -87390225 - AluJo SINE Alu -10 302 1 254 346 89 17 chr12 56396294 56396473 -87389982 - L2 LINE L2 -636 2678 2487 2154 100 3 14 chr12 56396616 56396907 -87389548 - AluSx SINE Alu -22 290 3 200 287 99 30 chr12 56397038 56397139 -87389316 - L2 LINE L2 -1437 1877 1770 2115 81 57 7 chr12 56397506 56397789 -87388666 - AluSq SINE Alu -16 297 1 1805 184 0 3 chr12 56397799 56398092 -87388363 - AluJb SINE Alu -20 292 1 447 269 32 32 chr12 56398105 56398261 -87388194 + LTR67 LTR ERVL 400 555 -2 1246 199 83 18 chr12 56398354 56398474 -87387981 + AluJo SINE Alu 1 112 -200 234 91 0 0 chr12 56398474 56398507 -87387948 + (A)n Simple_repeat Simple_repeat 1 33 0 1246 199 83 18 chr12 56398507 56398630 -87387825 + AluJo SINE Alu 112 294 -18 2257 205 56 31 chr12 56398688 56399049 -87387406 + MLT1F LTR MaLR 1 380 -162 2203 116 0 23 chr12 56399049 56399352 -87387103 - AluSx SINE Alu -16 296 1 2257 205 56 31 chr12 56399352 56399511 -87386944 + MLT1F LTR MaLR 380 534 -8 2216 101 7 7 chr12 56399569 56399865 -87386590 - AluSx SINE Alu -16 296 1 300 286 28 16 chr12 56399877 56400003 -87386452 - MER5B DNA MER1_type -48 141 4 207 0 0 0 chr12 56400770 56400793 -87385662 + (TCTCCC)n Simple_repeat Simple_repeat 2 24 0 7053 60 13 28 chr12 56400793 56402611 -87383844 + SVA Other Other 1 1386 0 2498 69 0 3 chr12 56402688 56402991 -87383464 + AluY SINE Alu 1 302 -9 300 294 34 15 chr12 56403867 56404003 -87382452 + MER5B DNA MER1_type 4 152 -37 1767 155 7 32 chr12 56404005 56404314 -87382141 + AluJo SINE Alu 1 301 -11 2182 98 11 3 chr12 56404468 56404755 -87381700 - AluSp SINE Alu -23 290 2 2270 91 7 3 chr12 56404759 56405056 -87381399 - AluSq SINE Alu -15 298 1 2068 145 0 0 chr12 56405063 56405353 -87381102 - AluJb SINE Alu -22 290 1 251 310 134 0 chr12 56405480 56405622 -87380833 - MIR SINE MIR -31 231 71 193 320 0 0 chr12 56405799 56405849 -87380606 - MIR SINE MIR -201 61 12 1305 133 0 0 chr12 56406331 56406519 -87379936 + AluJb SINE Alu 121 308 -4 721 113 0 52 chr12 56406930 56407045 -87379410 - L1PA16 LINE L1 -22 6144 6036 1388 160 83 49 chr12 56407046 56407369 -87379086 - AluJo SINE Alu 0 312 1 1147 134 50 0 chr12 56407989 56408168 -87378287 - MER5A DNA MER1_type 0 189 2 2309 117 0 0 chr12 56408264 56408573 -87377882 + AluSq SINE Alu 1 309 -4 22 35 0 0 chr12 56408671 56408700 -87377755 + AT_rich Low_complexity Low_complexity 1 29 0 968 112 15 0 chr12 56408858 56408992 -87377463 - AluJo SINE Alu -176 136 1 198 103 0 0 chr12 56409691 56409720 -87376735 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 315 0 0 0 chr12 56409954 56409989 -87376466 + (TG)n Simple_repeat Simple_repeat 2 36 0 2246 77 0 4 chr12 56410515 56410789 -87375666 - AluSg SINE Alu -34 276 4 1214 158 77 0 chr12 56410985 56411181 -87375274 - AluJb SINE Alu -13 299 89 1629 173 0 44 chr12 56411181 56411363 -87375092 - AluJb SINE Alu -8 304 140 2218 130 0 0 chr12 56411363 56411664 -87374791 - AluSx SINE Alu -11 301 1 1629 173 0 44 chr12 56411664 56411799 -87374656 - AluJb SINE Alu -172 140 1 748 256 103 0 chr12 56411814 56412017 -87374438 + MIR SINE MIR 32 255 -7 255 246 103 24 chr12 56412037 56412163 -87374292 + L2 LINE L2 3137 3272 0 2277 121 0 0 chr12 56412800 56413107 -87373348 + AluSq SINE Alu 3 309 -4 22 35 0 0 chr12 56413205 56413234 -87373221 + AT_rich Low_complexity Low_complexity 1 29 0 772 108 54 0 chr12 56413392 56413521 -87372934 - AluJo SINE Alu -176 136 1 198 103 0 0 chr12 56414216 56414245 -87372210 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 315 0 0 0 chr12 56414479 56414514 -87371941 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 47 0 0 chr12 56414983 56415026 -87371429 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2311 72 0 0 chr12 56415027 56415303 -87371152 - AluSg SINE Alu -34 276 1 2313 123 0 0 chr12 56416192 56416502 -87369953 - AluSx SINE Alu 0 312 3 2266 95 7 0 chr12 56416699 56416994 -87369461 - AluSg SINE Alu -13 297 1 530 258 101 6 chr12 56417056 56417234 -87369221 + MIR SINE MIR 32 226 -36 1009 92 0 7 chr12 56417313 56417454 -87369001 - AluSg/x SINE Alu -11 301 162 302 335 155 0 chr12 56417475 56417669 -87368786 + L2 LINE L2 3008 3231 -41 731 266 62 72 chr12 56417915 56418235 -87368220 + MLT1J LTR MaLR 1 317 -194 2092 219 79 24 chr12 56418608 56419114 -87367341 + MLT1F LTR MaLR 1 534 -8 2035 122 10 6 chr12 56420340 56420651 -87365804 - AluSx SINE Alu 0 312 1 244 238 113 0 chr12 56420946 56421026 -87365429 + L1MC/D LINE L1 5815 5903 -1905 4677 154 37 28 chr12 56421193 56421737 -87364718 - L1MB2 LINE L1 -7 6164 5607 1773 140 4 4 chr12 56421737 56422002 -87364453 - AluJb SINE Alu -17 295 31 4677 154 37 28 chr12 56422002 56422345 -87364110 - L1MB2 LINE L1 -564 5607 5269 1276 157 58 0 chr12 56422345 56422568 -87363887 - MER46A DNA MER2_type 0 236 1 939 235 137 52 chr12 56422625 56422932 -87363523 - L1MC4 LINE L1 -12 8030 7751 1919 138 0 58 chr12 56422932 56423257 -87363198 + AluJb SINE Alu 1 306 -6 939 235 137 52 chr12 56423257 56423490 -87362965 - L1MC4 LINE L1 -291 7751 7444 401 324 25 56 chr12 56423539 56423823 -87362632 + L1ME LINE L1 5543 5817 -304 180 176 0 0 chr12 56423824 56423858 -87362597 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 2245 117 3 7 chr12 56423860 56424169 -87362286 - AluSx SINE Alu -4 308 1 24 0 0 0 chr12 56424169 56424193 -87362262 + AT_rich Low_complexity Low_complexity 1 24 0 650 306 52 5 chr12 56424879 56425072 -87361383 + MIR SINE MIR 36 237 -25 264 366 0 0 chr12 56425279 56425361 -87361094 + MIR SINE MIR 35 116 -92 194 204 56 0 chr12 56425478 56425532 -87360923 + MIR SINE MIR 83 139 -123 3505 185 28 60 chr12 56425581 56425895 -87360560 - L1ME1 LINE L1 -54 6112 5790 2280 89 10 0 chr12 56425895 56426188 -87360267 - AluSp SINE Alu -17 296 1 3505 185 28 60 chr12 56426188 56426643 -87359812 - L1ME1 LINE L1 -376 5790 5368 1735 134 3 99 chr12 56426643 56426957 -87359498 - AluSx SINE Alu -26 286 3 3505 185 28 60 chr12 56426957 56427001 -87359454 - L1ME1 LINE L1 -798 5368 5324 306 0 0 0 chr12 56427024 56427058 -87359397 + (TA)n Simple_repeat Simple_repeat 2 35 0 283 256 76 19 chr12 56427099 56427220 -87359235 + L1P3 LINE L1 5708 5836 -318 200 279 59 0 chr12 56427563 56427631 -87358824 + MIR SINE MIR 178 249 -13 23 33 0 0 chr12 56428349 56428379 -87358076 + AT_rich Low_complexity Low_complexity 1 30 0 1317 185 4 21 chr12 56428919 56429162 -87357293 - MER8 DNA MER2_type 0 239 1 196 189 19 38 chr12 56430440 56430493 -87355962 + L2 LINE L2 3221 3272 0 2026 123 0 23 chr12 56430562 56430731 -87355724 - AluJb SINE Alu -17 295 135 2092 108 3 49 chr12 56430731 56431055 -87355400 - AluSx SINE Alu -3 309 1 2026 123 0 23 chr12 56431055 56431187 -87355268 - AluJb SINE Alu -177 135 1 1805 175 0 0 chr12 56431654 56431940 -87354515 - AluJo SINE Alu -26 286 1 230 354 0 0 chr12 56432454 56432533 -87353922 - L2 LINE L2 -8 3305 3227 * 1109 173 16 68 chr12 56432530 56432779 -87353676 + MIR SINE MIR 6 241 -21 423 92 0 0 chr12 56432989 56433054 -87353401 + (TG)n Simple_repeat Simple_repeat 1 65 0 357 347 100 16 chr12 56433097 56433417 -87353038 - L2 LINE L2 -341 2973 2627 840 323 171 9 chr12 56433426 56434080 -87352375 - L2 LINE L2 -842 2472 1713 333 0 0 0 chr12 56434200 56434237 -87352218 + (TG)n Simple_repeat Simple_repeat 2 38 0 1011 257 72 48 chr12 56434345 56434549 -87351906 - L1MC4a LINE L1 -1942 5866 5647 2321 100 0 7 chr12 56434549 56434859 -87351596 - AluSq SINE Alu -5 308 1 1011 257 72 48 chr12 56434859 56435031 -87351424 - L1MC4a LINE L1 -2161 5647 5481 289 306 52 22 chr12 56435054 56435188 -87351267 + L3 LINE CR1 1310 1447 -130 187 322 161 6 chr12 56435226 56435406 -87351049 - MIR SINE MIR -51 211 4 485 274 36 24 chr12 56436130 56436298 -87350157 + MIR3 SINE MIR 1 170 -38 2316 113 3 0 chr12 56436671 56436982 -87349473 - AluSx SINE Alu 0 312 1 2504 54 0 7 chr12 56438295 56438589 -87347866 + AluY SINE Alu 1 292 -19 846 130 8 15 chr12 56439671 56439802 -87346653 - FLAM_A SINE Alu 0 133 4 195 193 123 0 chr12 56441215 56441272 -87345183 + MIR3 SINE MIR 111 174 -34 321 26 0 0 chr12 56442115 56442153 -87344302 + (TG)n Simple_repeat Simple_repeat 2 39 0 192 287 194 8 chr12 56442175 56442304 -87344151 + MIR SINE MIR 100 252 -10 544 269 82 29 chr12 56442623 56443034 -87343421 - MARNA DNA Mariner -14 572 88 285 51 0 0 chr12 56444586 56444625 -87341830 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2315 62 0 31 chr12 56444636 56444927 -87341528 - AluY SINE Alu -29 282 1 807 167 8 0 chr12 56444931 56445063 -87341392 - FLAM_C SINE Alu 0 133 1 2117 97 24 3 chr12 56445570 56445858 -87340597 - AluSp SINE Alu -19 294 1 1025 158 13 0 chr12 56446095 56446253 -87340202 - FAM SINE Alu -11 164 5 2904 0 0 0 chr12 56447871 56448174 -87338281 - AluYa5 SINE Alu -8 303 1 435 198 37 0 chr12 56448351 56448432 -87338023 - MER96 DNA MER1_type? 0 175 92 * 441 208 0 0 chr12 56448360 56448437 -87338018 + MER96 DNA MER1_type? 13 89 -86 1395 177 66 35 chr12 56449405 56449693 -87336762 - AluJo SINE Alu -5 297 1 1189 166 148 0 chr12 56449730 56449959 -87336496 + AluJb SINE Alu 32 294 -18 21 36 0 0 chr12 56453295 56453323 -87333132 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 56455095 56455123 -87331332 + AT_rich Low_complexity Low_complexity 1 28 0 980 109 15 0 chr12 56455124 56455261 -87331194 - AluSg/x SINE Alu -10 300 162 1797 157 35 20 chr12 56455267 56455610 -87330845 - L1MB2 LINE L1 -2 6169 5822 2260 117 10 0 chr12 56455615 56455923 -87330532 - AluSq SINE Alu -2 311 1 505 260 125 75 chr12 56455937 56456085 -87330370 - L1MC4a LINE L1 -1910 5898 5759 2223 74 56 7 chr12 56456085 56456369 -87330086 - AluSq SINE Alu -15 298 1 505 260 125 75 chr12 56456369 56456439 -87330016 - L1MC4a LINE L1 -2049 5759 5694 1775 152 35 10 chr12 56456439 56456729 -87329726 - AluSx SINE Alu -15 297 1 505 260 125 75 chr12 56456729 56456828 -87329627 - L1MC4a LINE L1 -2114 5694 5564 1131 131 6 11 chr12 56457651 56457826 -87328629 - FRAM SINE Alu -3 173 1 2268 105 0 16 chr12 56457863 56458167 -87328288 + AluSg SINE Alu 1 299 -11 860 130 101 18 chr12 56458200 56458369 -87328086 + MER5A DNA MER1_type 7 189 0 248 270 206 8 chr12 56458654 56458780 -87327675 + MIR3 SINE MIR 52 202 -6 1475 161 65 48 chr12 56459709 56459851 -87326604 + AluJo SINE Alu 1 139 -173 255 31 0 0 chr12 56459851 56459883 -87326572 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1475 161 65 48 chr12 56459883 56460032 -87326423 + AluJo SINE Alu 139 297 -15 180 0 0 0 chr12 56461234 56461254 -87325201 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2073 58 0 0 chr12 56461893 56462134 -87324321 + AluSg/x SINE Alu 71 311 -1 2150 116 0 10 chr12 56462986 56463296 -87323159 - AluSx SINE Alu -4 308 2 633 206 85 12 chr12 56463479 56463644 -87322811 + MER5B DNA MER1_type 2 178 0 387 0 0 0 chr12 56464515 56464558 -87321897 + (TG)n Simple_repeat Simple_repeat 2 44 0 739 150 0 60 chr12 56464562 56464695 -87321760 - FLAM_C SINE Alu -17 126 2 1681 175 17 7 chr12 56464731 56465022 -87321433 + AluJb SINE Alu 1 294 -18 1936 105 85 44 chr12 56465415 56465710 -87320745 + AluSx SINE Alu 1 307 -5 389 198 11 0 chr12 56466476 56466567 -87319888 + CT-rich Low_complexity Low_complexity 1 92 0 561 231 30 8 chr12 56466568 56466702 -87319753 - FLAM_C SINE Alu 0 143 7 1018 164 21 21 chr12 56466778 56466967 -87319488 + MER5A DNA MER1_type 1 189 0 1743 132 23 16 chr12 56467033 56467337 -87319118 - L1MA9 LINE L1 -13 6299 5994 1667 161 42 14 chr12 56467770 56468056 -87318399 - AluJb SINE Alu -18 294 1 900 192 0 18 chr12 56468082 56468249 -87318206 - AluJb SINE Alu -16 296 133 745 179 46 33 chr12 56468335 56468486 -87317969 + BC200 scRNA scRNA 9 161 -39 2097 115 0 3 chr12 56469210 56469547 -87316908 - AluSx SINE Alu 0 336 1 481 227 159 12 chr12 56470652 56470815 -87315640 + MIR3 SINE MIR 4 190 -18 207 332 112 20 chr12 56472043 56472208 -87314247 + MIR SINE MIR 10 186 -62 1458 227 52 54 chr12 56472444 56473147 -87313308 - L2 LINE L2 0 3313 2620 833 249 13 30 chr12 56474080 56474317 -87312138 + MIR SINE MIR 20 252 -10 447 297 7 27 chr12 56475210 56475358 -87311097 - MER102b DNA MER1_type 0 341 197 505 68 81 0 chr12 56476302 56476376 -87310079 + MADE1 DNA Mariner 1 80 0 2146 122 0 31 chr12 56476457 56476778 -87309677 - AluY SINE Alu 0 311 1 783 254 49 18 chr12 56476869 56477093 -87309362 - MIR SINE MIR -23 239 9 340 236 51 96 chr12 56478633 56478811 -87307644 - MIR SINE MIR -46 216 47 1748 131 32 14 chr12 56481415 56481697 -87304758 - AluSx SINE Alu -13 299 13 276 309 64 0 chr12 56481884 56481978 -87304477 - L2 LINE L2 -6 3307 3208 674 219 36 36 chr12 56482034 56482230 -87304225 - MIR SINE MIR -61 201 6 770 139 17 0 chr12 56482693 56482808 -87303647 + FLAM_C SINE Alu 1 117 -26 186 232 18 36 chr12 56483839 56483895 -87302560 - MIR SINE MIR -50 212 158 1904 134 29 16 chr12 56484216 56484523 -87301932 + AluJb SINE Alu 1 311 -1 239 246 33 0 chr12 56485039 56485100 -87301355 - L3 LINE CR1 -65 1512 1450 332 321 45 22 chr12 56485101 56485235 -87301220 + MIR3 SINE MIR 20 156 -52 478 253 32 26 chr12 56485279 56485433 -87301022 + MER5A DNA MER1_type 35 189 0 455 184 346 0 chr12 56485491 56485627 -87300828 - MER5A DNA MER1_type -6 183 1 266 311 22 15 chr12 56485659 56485794 -87300661 - L3 LINE CR1 -156 1421 1286 210 336 55 39 chr12 56485795 56485923 -87300532 - L3 LINE CR1 -31 1546 1417 517 318 115 28 chr12 56487481 56487767 -87298688 + MER115 DNA AcHobo 2 312 -381 905 233 131 4 chr12 56487820 56488065 -87298390 + MER115 DNA AcHobo 411 686 -7 294 303 155 7 chr12 56488325 56488480 -87297975 + MIR SINE MIR 79 256 -6 443 309 37 21 chr12 56488972 56489163 -87297292 - MIR3 SINE MIR 0 208 15 1782 174 20 88 chr12 56492245 56492550 -87293905 - L1MD2 LINE L1 0 6359 6094 2134 117 3 10 chr12 56492550 56492857 -87293598 + AluSx SINE Alu 1 305 -7 1782 174 20 88 chr12 56492857 56493005 -87293450 - L1MD2 LINE L1 -265 6094 5937 324 334 101 30 chr12 56493080 56493253 -87293202 - MIR3 SINE MIR -59 149 3 832 113 57 0 chr12 56493783 56493907 -87292548 + AluJo/FLAM SINE Alu 3 133 -179 1859 163 3 7 chr12 56493910 56494216 -87292239 + AluJb SINE Alu 1 305 -7 221 236 0 18 chr12 56495254 56495309 -87291146 + MIR3 SINE MIR 123 176 -32 375 23 0 0 chr12 56495323 56495367 -87291088 + (TG)n Simple_repeat Simple_repeat 1 44 0 329 259 108 24 chr12 56496358 56496469 -87289986 + L3b LINE CR1 1309 1440 -143 2353 65 16 7 chr12 56496469 56496776 -87289679 + AluSg SINE Alu 1 310 0 329 259 108 24 chr12 56496776 56496830 -87289625 + L3b LINE CR1 1440 1488 -95 240 277 0 67 chr12 56497307 56497426 -87289029 + G-rich Low_complexity Low_complexity 4 114 0 230 133 0 22 chr12 56497430 56497475 -87288980 + (CGG)n Simple_repeat Simple_repeat 2 45 0 508 290 0 32 chr12 56500815 56500939 -87285516 - L2 LINE L2 0 3272 3153 298 309 12 0 chr12 56501335 56501419 -87285036 + L2 LINE L2 3188 3272 0 335 244 76 61 chr12 56502517 56502648 -87283807 + MIR3 SINE MIR 3 135 -73 209 250 42 14 chr12 56503636 56503708 -87282747 + CT-rich Low_complexity Low_complexity 4 77 0 421 213 130 0 chr12 56506745 56506853 -87279602 - MIR SINE MIR -67 195 74 206 36 71 71 chr12 56507043 56507099 -87279356 + C-rich Low_complexity Low_complexity 3 58 0 212 167 24 0 chr12 56507309 56507351 -87279104 + (TG)n Simple_repeat Simple_repeat 1 43 0 312 301 0 35 chr12 56507972 56508085 -87278370 - L3b LINE CR1 -214 1369 1261 228 211 96 0 chr12 56508642 56508694 -87277761 - MIR SINE MIR -115 147 91 225 94 0 0 chr12 56509587 56509619 -87276836 + (TG)n Simple_repeat Simple_repeat 1 32 0 254 135 0 0 chr12 56511222 56511259 -87275196 + MIR SINE MIR 79 115 -147 307 262 128 27 chr12 56511498 56511647 -87274808 - MIR SINE MIR -11 251 88 211 241 0 17 chr12 56511637 56511695 -87274760 - MER5A DNA MER1_type -6 183 127 * 462 222 10 10 chr12 56511706 56511805 -87274650 + FRAM SINE Alu 11 109 -67 225 94 0 0 chr12 56512940 56512972 -87273483 + (CA)n Simple_repeat Simple_repeat 1 32 0 228 211 96 0 chr12 56513865 56513917 -87272538 + MIR SINE MIR 91 147 -115 312 301 0 35 chr12 56514474 56514587 -87271868 + L3b LINE CR1 1261 1369 -214 212 167 24 0 chr12 56515209 56515251 -87271204 + (CA)n Simple_repeat Simple_repeat 1 43 0 206 36 71 71 chr12 56515460 56515516 -87270939 + G-rich Low_complexity Low_complexity 3 58 0 431 239 115 8 chr12 56515706 56515836 -87270619 + MIR SINE MIR 74 217 -45 254 135 0 0 chr12 56517197 56517234 -87269221 + MIR SINE MIR 79 115 -147 307 262 128 27 chr12 56517473 56517622 -87268833 - MIR SINE MIR -11 251 88 211 241 0 17 chr12 56517612 56517670 -87268785 - MER5A DNA MER1_type -6 183 127 * 462 222 10 10 chr12 56517681 56517780 -87268675 + FRAM SINE Alu 11 109 -67 1859 148 43 13 chr12 56518155 56518458 -87267997 + AluJo SINE Alu 1 312 0 427 268 9 9 chr12 56518494 56518606 -87267849 - MER5A DNA MER1_type -77 112 1 218 216 108 14 chr12 56518616 56518690 -87267765 - MIR SINE MIR -103 105 25 293 228 20 107 chr12 56518717 56518866 -87267589 + MIR SINE MIR 108 243 -19 242 258 0 48 chr12 56520886 56521010 -87265445 + (CAGAGA)n Simple_repeat Simple_repeat 2 119 0 1895 139 7 4 chr12 56521039 56521346 -87265109 + AluJo SINE Alu 12 312 0 233 146 0 73 chr12 56521378 56521433 -87265022 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 258 125 0 89 chr12 56521438 56521494 -87264961 - L3 LINE CR1 -3 1574 1524 436 236 73 4 chr12 56521506 56521662 -87264793 + MER33 DNA MER1_type 1 163 -103 2156 100 10 7 chr12 56521663 56521952 -87264503 - AluSp SINE Alu -18 295 6 1826 151 15 52 chr12 56521981 56522264 -87264191 + AluJb SINE Alu 1 272 -40 298 0 48 0 chr12 56522264 56522306 -87264149 + (CA)n Simple_repeat Simple_repeat 2 45 0 1826 151 15 52 chr12 56522306 56522346 -87264109 + AluJb SINE Alu 272 312 0 243 62 0 0 chr12 56522679 56522711 -87263744 - Alu SINE Alu -268 32 1 247 127 38 25 chr12 56522712 56522736 -87263719 + MER33 DNA MER1_type 179 201 -2423 1979 151 7 3 chr12 56522736 56523021 -87263434 + AluJb SINE Alu 1 286 -26 396 0 0 0 chr12 56523022 56523066 -87263389 + (CA)n Simple_repeat Simple_repeat 2 45 0 247 127 38 25 chr12 56523066 56523118 -87263337 + MER33 DNA MER1_type 200 258 -105 1286 87 0 2 chr12 56523118 56523360 -87263095 + AluSx SINE Alu 2 292 -20 534 144 9 27 chr12 56523361 56523472 -87262983 + MER33 DNA MER1_type 216 324 0 334 255 31 20 chr12 56523473 56523571 -87262884 - L3 LINE CR1 -80 1497 1399 2354 104 10 0 chr12 56524247 56524554 -87261901 - AluSq SINE Alu -3 310 1 200 184 0 26 chr12 56526230 56526268 -87260187 + C-rich Low_complexity Low_complexity 3 39 0 527 284 52 0 chr12 56526910 56527065 -87259390 - MIR SINE MIR -98 164 2 243 0 0 0 chr12 56528411 56528438 -87258017 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 360 0 0 0 chr12 56528437 56528477 -87257978 + (TG)n Simple_repeat Simple_repeat 2 41 0 296 321 24 22 chr12 56528515 56528649 -87257806 + MIR SINE MIR 22 154 -65 796 302 24 12 chr12 56528925 56529173 -87257282 - MIR SINE MIR -10 252 2 191 61 30 0 chr12 56529191 56529224 -87257231 + (TG)n Simple_repeat Simple_repeat 2 35 0 2246 125 0 13 chr12 56529253 56529565 -87256890 + AluSx SINE Alu 1 308 -4 200 205 0 0 chr12 56530948 56530987 -87255468 + GA-rich Low_complexity Low_complexity 2 40 0 364 258 16 40 chr12 56532200 56532324 -87254131 - MER91A DNA MER1_type -63 133 13 21 0 0 0 chr12 56533894 56533915 -87252540 + AT_rich Low_complexity Low_complexity 1 21 0 198 280 108 54 chr12 56535212 56535398 -87251057 - L3b LINE CR1 -147 1436 1241 688 222 113 5 chr12 56535845 56536048 -87250407 + MER46C DNA MER2_type 80 304 -34 295 247 201 52 chr12 56536080 56536254 -87250201 - MIR SINE MIR -12 250 51 319 239 68 43 chr12 56537055 56537172 -87249283 - MIR SINE MIR -105 157 38 242 148 19 0 chr12 56537564 56537618 -87248837 + (TG)n Simple_repeat Simple_repeat 2 56 0 1980 93 43 3 chr12 56538996 56539297 -87247158 + L1PA16 LINE L1 5851 6163 -3 222 231 26 64 chr12 56543105 56543261 -87243194 + C-rich Low_complexity Low_complexity 3 152 0 405 308 53 35 chr12 56546200 56546369 -87240086 + MIR3 SINE MIR 30 201 -7 183 233 0 0 chr12 56546386 56546429 -87240026 - MIR SINE MIR -173 89 47 904 330 39 11 chr12 56546569 56547035 -87239420 - MARNA DNA Mariner -65 521 43 1776 88 0 0 chr12 56547382 56547598 -87238857 - AluSc SINE Alu -16 293 78 183 233 0 0 chr12 56548109 56548152 -87238303 - MIR SINE MIR -173 89 47 868 335 39 11 chr12 56548292 56548758 -87237697 - MARNA DNA Mariner -65 521 43 1739 88 5 0 chr12 56549104 56549320 -87237135 - AluSc SINE Alu -15 294 78 460 308 8 15 chr12 56549427 56549557 -87236898 - L2 LINE L2 0 3272 3144 659 300 5 19 chr12 56549704 56549914 -87236541 + MIR SINE MIR 8 214 -48 1595 179 127 54 chr12 56550512 56550744 -87235711 - MLT1C LTR MaLR -9 458 244 1994 149 3 13 chr12 56550744 56551059 -87235396 - AluSx SINE Alu 0 312 1 1595 179 127 54 chr12 56551059 56551253 -87235202 - MLT1C LTR MaLR -223 244 1 345 202 10 19 chr12 56553378 56553482 -87232973 + GA-rich Low_complexity Low_complexity 3 105 0 339 246 0 0 chr12 56553506 56553575 -87232880 + LTR37B LTR ERV1 6 74 -394 3997 146 63 23 chr12 56553575 56554259 -87232196 + MER50 LTR ERV1 1 711 -23 578 286 76 34 chr12 56554254 56554492 -87231963 + LTR37B LTR ERV1 65 312 -156 * 935 204 147 73 chr12 56554966 56555139 -87231316 - MLT1C LTR MaLR -72 395 236 1455 151 115 14 chr12 56555139 56555418 -87231037 - AluSx SINE Alu -5 307 1 935 204 147 73 chr12 56555418 56555612 -87230843 - MLT1C LTR MaLR -231 236 1 21 0 0 0 chr12 56557749 56557770 -87228685 + AT_rich Low_complexity Low_complexity 1 21 0 462 267 114 89 chr12 56558066 56558172 -87228283 + L3 LINE CR1 1147 1249 -328 571 268 51 31 chr12 56558172 56558426 -87228029 + MIR SINE MIR 4 262 0 462 267 114 89 chr12 56558426 56558634 -87227821 + L3 LINE CR1 1249 1469 -108 1404 309 58 30 chr12 56559449 56560389 -87226066 - L2 LINE L2 0 3313 2357 888 292 57 21 chr12 56560435 56560755 -87225700 - MLT1J LTR MaLR -114 397 23 557 291 240 26 chr12 56560755 56561209 -87225246 - L2 LINE L2 -2364 950 400 1685 157 14 11 chr12 56561262 56561549 -87224906 - AluJo SINE Alu -24 288 1 388 320 102 37 chr12 56561601 56561895 -87224560 - L2 LINE L2 -2889 425 113 1995 174 39 62 chr12 56562043 56562560 -87223895 + MLT1D LTR MaLR 1 505 0 626 81 0 20 chr12 56564297 56564396 -87222059 - L1MA7 LINE L1 0 6291 6195 226 224 94 24 chr12 56564532 56564617 -87221838 - LTR40b LTR ERVL -10 452 362 351 0 0 0 chr12 56564952 56564991 -87221464 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2327 94 0 0 chr12 56565551 56565859 -87220596 + AluSc SINE Alu 1 308 -1 1386 173 0 71 chr12 56565981 56566305 -87220150 - AluJo SINE Alu -11 301 1 678 167 0 61 chr12 56566484 56566616 -87219839 + AluSg/x SINE Alu 189 312 0 380 287 74 16 chr12 56566902 56567024 -87219431 + MIR SINE MIR 113 241 -21 546 260 90 31 chr12 56570403 56570626 -87215829 + L2 LINE L2 3074 3309 -4 182 306 16 16 chr12 56570638 56570700 -87215755 - MIR SINE MIR -66 142 81 529 296 20 31 chr12 56571381 56571577 -87214878 + L2 LINE L2 3120 3313 0 2157 123 36 27 chr12 56571605 56571939 -87214516 - MER1B DNA MER1_type 0 337 1 398 297 141 10 chr12 56572004 56572196 -87214259 - MIR SINE MIR -25 237 21 356 357 111 0 chr12 56572772 56573016 -87213439 + L2 LINE L2 2583 2853 -461 261 295 125 36 chr12 56573215 56573327 -87213128 - L2 LINE L2 -1 3271 3150 266 311 111 0 chr12 56573599 56573689 -87212766 - L2 LINE L2 -9 3263 3164 465 190 147 25 chr12 56573693 56573856 -87212599 - MER53 DNA DNA -1 188 6 248 242 12 170 chr12 56574580 56574745 -87211710 + MIR3 SINE MIR 38 176 -32 212 282 28 56 chr12 56574891 56574962 -87211493 - MER5A DNA MER1_type -88 101 33 237 151 0 0 chr12 56575062 56575115 -87211340 + (TG)n Simple_repeat Simple_repeat 2 54 0 589 242 61 18 chr12 56575246 56575411 -87211044 - MIR SINE MIR -71 191 20 959 278 97 73 chr12 56576688 56577277 -87209178 - MLT1L LTR MaLR -6 609 7 866 215 14 48 chr12 56578314 56578523 -87207932 - AluJo SINE Alu -110 202 1 1448 238 138 46 chr12 56579049 56579528 -87206927 + L2 LINE L2 1754 2276 -1038 1375 293 84 98 chr12 56579908 56580448 -87206007 - L1 LINE L1 -2205 3941 3395 2261 93 3 0 chr12 56580448 56580759 -87205696 - AluSq SINE Alu 0 313 2 1375 293 84 98 chr12 56580759 56581429 -87205026 - L1 LINE L1 -2751 3395 2748 732 254 166 18 chr12 56581429 56581646 -87204809 + MIR SINE MIR 12 260 -2 319 290 90 71 chr12 56581851 56581937 -87204518 - L1 LINE L1 -3653 2493 2410 2232 82 10 3 chr12 56581937 56582243 -87204212 - AluSq SINE Alu -5 308 1 319 290 90 71 chr12 56582243 56582411 -87204044 - L1 LINE L1 -3736 2410 2234 2886 223 67 71 chr12 56582427 56583907 -87202548 - L1MC4 LINE L1 -107 7888 6557 1159 271 87 26 chr12 56584788 56585282 -87201173 - HAL1b LINE L1 -546 802 279 1083 119 45 0 chr12 56585320 56585497 -87200958 - L1MB2 LINE L1 -2 6169 5985 1070 120 6 0 chr12 56585510 56585685 -87200770 + (TTCC)n Simple_repeat Simple_repeat 4 179 0 614 202 40 0 chr12 56585686 56585810 -87200645 - FLAM_A SINE Alu -4 129 1 510 183 10 39 chr12 56587016 56587120 -87199335 - L2 LINE L2 0 3313 3213 2256 116 73 14 chr12 56587120 56587464 -87198991 + THE1B LTR MaLR 1 364 0 7190 98 2 2 chr12 56587489 56588438 -87198017 + THE1B-int LTR MaLR 5 953 -627 5280 244 101 24 chr12 56588447 56589884 -87196571 + MSTC-int LTR MaLR 189 1735 0 2351 167 9 47 chr12 56589884 56589986 -87196469 + MSTC LTR MaLR 1 105 -323 2069 125 0 3 chr12 56589986 56590290 -87196165 + AluSx SINE Alu 2 304 -8 2351 167 9 47 chr12 56590290 56590630 -87195825 + MSTC LTR MaLR 105 426 -2 2015 122 0 3 chr12 56591888 56592183 -87194272 - AluJb SINE Alu -18 294 1 434 285 102 75 chr12 56594290 56594658 -87191797 - L2 LINE L2 -1 3271 2894 538 285 48 43 chr12 56594658 56594709 -87191746 - MER91A DNA MER1_type 0 196 147 2144 96 3 0 chr12 56594709 56595010 -87191445 + AluSx SINE Alu 1 302 -10 538 285 48 43 chr12 56595010 56595144 -87191311 - MER91A DNA MER1_type -49 147 10 185 315 11 11 chr12 56595147 56595236 -87191219 - L2 LINE L2 -372 2900 2812 938 218 134 70 chr12 56597614 56597815 -87188640 + LTR33 LTR ERVL 23 210 -311 1375 271 83 34 chr12 56597815 56598380 -87188075 + MLT1E LTR MaLR 1 593 0 938 218 134 70 chr12 56598380 56598579 -87187876 + LTR33 LTR ERVL 210 460 -61 7432 55 0 0 chr12 56598579 56600269 -87186186 + L1PA6 LINE L1 4441 6138 -16 938 218 134 70 chr12 56600269 56600336 -87186119 + LTR33 LTR ERVL 460 521 0 1000 263 4 8 chr12 56600686 56600926 -87185529 - MIR SINE MIR -10 252 14 281 167 0 0 chr12 56601014 56601062 -87185393 - MLT2D LTR ERVL 0 464 417 246 32 0 0 chr12 56601069 56601107 -87185348 + (CA)n Simple_repeat Simple_repeat 1 69 0 246 32 0 0 chr12 56601107 56601138 -87185317 + (CA)n Simple_repeat Simple_repeat 2 32 0 1652 197 8 58 chr12 56601187 56601567 -87184888 - MLT2D LTR ERVL -48 366 6 364 250 0 0 chr12 56601887 56601959 -87184496 - Charlie8 DNA MER1_type -1 2416 2345 309 250 15 0 chr12 56602105 56602173 -87184282 - Charlie8 DNA MER1_type -2242 175 107 617 153 51 0 chr12 56602240 56602358 -87184097 - L1MA8 LINE L1 -10 6281 6158 434 230 0 107 chr12 56602358 56602536 -87183919 - L1MC4 LINE L1 -10 8032 7874 2239 113 0 16 chr12 56602591 56602900 -87183555 - AluSx SINE Alu -8 304 1 2057 165 14 11 chr12 56603001 56603365 -87183090 + MER47A DNA MER2_type 1 365 -1 363 280 174 28 chr12 56604097 56604315 -87182140 + MLT1J1 LTR MaLR 69 318 -128 207 0 0 0 chr12 56605262 56605285 -87181170 + (T)n Simple_repeat Simple_repeat 1 23 0 249 375 0 0 chr12 56605417 56605505 -87180950 + G-rich Low_complexity Low_complexity 3 90 0 191 286 71 0 chr12 56606998 56607068 -87179387 - L2 LINE L2 -60 3253 3179 318 301 61 61 chr12 56608203 56608675 -87177780 - L2 LINE L2 -1 3312 2841 635 205 99 12 chr12 56609886 56609995 -87176460 - L1MA9 LINE L1 -38 6274 6143 300 102 0 0 chr12 56609995 56610044 -87176411 + (TG)n Simple_repeat Simple_repeat 2 50 0 635 205 99 12 chr12 56610044 56610105 -87176350 - L1MA9 LINE L1 -169 6143 6089 187 273 30 0 chr12 56610579 56610645 -87175810 + MIR SINE MIR 64 131 -131 236 414 17 25 chr12 56611751 56611990 -87174465 + L2 LINE L2 2807 3043 -229 2214 99 3 29 chr12 56611991 56612305 -87174150 - AluSc SINE Alu -3 306 1 226 313 82 15 chr12 56612439 56612573 -87173882 + L2 LINE L2 3121 3263 -9 507 248 32 60 chr12 56612735 56612947 -87173508 - L1ME2 LINE L1 0 6166 5955 733 176 0 16 chr12 56612955 56613080 -87173375 - FRAM SINE Alu -16 160 38 261 83 0 0 chr12 56613900 56613936 -87172519 + (TG)n Simple_repeat Simple_repeat 1 36 0 559 286 114 21 chr12 56614869 56615201 -87171254 - MARNA DNA Mariner -204 382 20 1361 153 26 111 chr12 56616307 56616648 -87169807 - AluJo SINE Alu 0 312 1 285 261 43 0 chr12 56617110 56617179 -87169276 - L2 LINE L2 0 3313 3242 22 0 0 0 chr12 56617806 56617828 -87168627 + AT_rich Low_complexity Low_complexity 1 22 0 387 286 27 0 chr12 56618928 56619075 -87167380 + MIR3 SINE MIR 42 192 -16 180 0 0 0 chr12 56620516 56620536 -87165919 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1428 145 39 4 chr12 56620613 56620847 -87165608 + MSTB1 LTR MaLR 146 387 -45 1118 76 0 0 chr12 56620874 56621019 -87165436 - AluSp/q SINE Alu -2 311 167 2787 175 75 11 chr12 56621202 56621825 -87164630 + Tigger7 DNA MER2_type 22 2564 -23 726 199 33 17 chr12 56622325 56622506 -87163949 - L1MA8 LINE L1 0 6291 6108 23 33 0 0 chr12 56623072 56623102 -87163353 + AT_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr12 56623492 56623520 -87162935 + (TG)n Simple_repeat Simple_repeat 2 29 0 21 82 0 0 chr12 56624411 56624460 -87161995 + AT_rich Low_complexity Low_complexity 1 49 0 37 0 0 0 chr12 56624521 56624558 -87161897 + AT_rich Low_complexity Low_complexity 1 37 0 615 271 59 24 chr12 56624630 56624885 -87161570 - L1MC4a LINE L1 -1963 5845 5582 4764 39 9 2 chr12 56624910 56625480 -87160975 - L1PA4 LINE L1 -3 6152 5579 2354 25 0 0 chr12 56625480 56625860 -87160595 + L1P1 LINE L1 5122 5501 -654 436 293 84 24 chr12 56625856 56626105 -87160350 - L1MC4a LINE L1 -545 5576 5313 * 185 125 0 0 chr12 56626498 56626530 -87159925 + L2 LINE L2 3281 3312 -1 220 109 22 22 chr12 56627102 56627148 -87159307 + GA-rich Low_complexity Low_complexity 1 46 0 210 167 0 0 chr12 56627319 56627355 -87159100 + A-rich Low_complexity Low_complexity 1 36 0 418 307 151 26 chr12 56627637 56628067 -87158388 + HAL1 LINE L1 1151 1634 -873 66 56 0 0 chr12 56628267 56628375 -87158080 + AT_rich Low_complexity Low_complexity 1 108 0 708 276 69 87 chr12 56628596 56629089 -87157366 + MLT1J LTR MaLR 25 508 -3 229 314 105 35 chr12 56629237 56629801 -87156654 + L1M4 LINE L1 2230 2832 -3314 1398 58 0 0 chr12 56629868 56630039 -87156416 + L1PA3 LINE L1 5985 6155 0 200 356 103 28 chr12 56630673 56631100 -87155355 + L2 LINE L2 787 1245 -2069 340 409 15 4 chr12 56631110 56631384 -87155071 + L2 LINE L2 1364 1640 -1674 237 335 92 29 chr12 56631413 56631586 -87154869 + L2 LINE L2 2792 2975 -339 310 151 0 0 chr12 56632447 56632500 -87153955 - MER94 DNA DNA 0 134 82 22 56 0 0 chr12 56632545 56632581 -87153874 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 56633811 56633834 -87152621 + AT_rich Low_complexity Low_complexity 1 23 0 211 215 37 9 chr12 56633951 56634058 -87152397 + (TA)n Simple_repeat Simple_repeat 1 110 0 2050 235 75 5 chr12 56634195 56634795 -87151660 - MER114 LTR ERV 0 648 7 1472 164 44 18 chr12 56634862 56635137 -87151318 + AluJo SINE Alu 1 282 -30 2323 107 0 3 chr12 56635137 56635446 -87151009 - AluSg SINE Alu 0 310 3 1865 124 3 47 chr12 56636333 56636458 -87149997 + AluSx SINE Alu 22 151 -161 2233 84 17 7 chr12 56636458 56636756 -87149699 + AluY SINE Alu 1 301 -10 1865 124 3 47 chr12 56636756 56636929 -87149526 + AluSx SINE Alu 151 307 -5 400 301 43 18 chr12 56637190 56637353 -87149102 + L2 LINE L2 1130 1296 -2018 219 36 0 0 chr12 56637389 56637417 -87149038 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1902 168 0 0 chr12 56637425 56637716 -87148739 + AluSc SINE Alu 1 291 -18 732 176 0 7 chr12 56637717 56637870 -87148585 + L1M3 LINE L1 4261 4412 -1734 2492 174 24 3 chr12 56637874 56638443 -87148012 + L1M3 LINE L1 4890 5469 -699 304 291 37 15 chr12 56638443 56638577 -87147878 + L2 LINE L2 2685 2821 -493 330 143 0 0 chr12 56639521 56639584 -87146871 + (TG)n Simple_repeat Simple_repeat 1 63 0 260 152 0 0 chr12 56640402 56640448 -87146007 - MARNA DNA Mariner -223 363 318 416 40 0 0 chr12 56641580 56641630 -87144825 - AluS SINE Alu -214 99 50 1333 147 5 5 chr12 56641630 56641852 -87144603 + AluSg/x SINE Alu 86 307 0 351 0 0 0 chr12 56641885 56641924 -87144531 + (CA)n Simple_repeat Simple_repeat 2 40 0 429 289 107 37 chr12 56642450 56642720 -87143735 - MARNA DNA Mariner -248 338 50 278 214 0 0 chr12 56644342 56644398 -87142057 - L2 LINE L2 0 3313 3258 204 203 0 87 chr12 56644495 56644564 -87141891 + A-rich Low_complexity Low_complexity 1 63 0 234 0 0 0 chr12 56644703 56644729 -87141726 + (TG)n Simple_repeat Simple_repeat 2 27 0 207 343 0 0 chr12 56645168 56645235 -87141220 + MIR SINE MIR 26 92 -170 316 262 48 7 chr12 56645525 56645670 -87140785 + (TG)n Simple_repeat Simple_repeat 1 151 0 384 219 19 9 chr12 56646822 56646927 -87139528 + LTR33A LTR ERVL 413 518 -5 875 294 114 1 chr12 56646927 56647414 -87139041 - L2 LINE L2 -65 3248 2690 1150 133 12 0 chr12 56647415 56647581 -87138874 + AluYa5 SINE Alu 129 296 -15 243 132 264 0 chr12 56647584 56647637 -87138818 - L2 LINE L2 -618 2696 2630 920 257 106 54 chr12 56647665 56648089 -87138366 - MLT1J LTR MaLR -64 447 2 1423 232 184 32 chr12 56648089 56648235 -87138220 - L2 LINE L2 -679 2635 2512 210 37 0 0 chr12 56648235 56648262 -87138193 + (GA)n Simple_repeat Simple_repeat 1 27 0 1917 173 14 22 chr12 56648269 56648634 -87137821 + MLT1A1 LTR MaLR 1 362 -3 1423 232 184 32 chr12 56648634 56649186 -87137269 - L2 LINE L2 -807 2507 1822 359 252 94 16 chr12 56649188 56649315 -87137140 + L1MC4a LINE L1 18 154 -5965 498 156 107 0 chr12 56650439 56650561 -87135894 - MER5C DNA MER1_type -112 212 78 1215 160 79 12 chr12 56650562 56650979 -87135476 + MLT1D LTR MaLR 1 505 0 277 267 13 0 chr12 56650979 56651054 -87135401 - MER5C DNA MER1_type -243 81 6 425 278 74 63 chr12 56651103 56651710 -87134745 + L1MC4a LINE L1 3587 4200 -1929 292 207 7 163 chr12 56651987 56652122 -87134333 - L2 LINE L2 0 3313 3200 457 309 74 23 chr12 56652483 56653057 -87133398 + L1MC4a LINE L1 5111 5711 -393 320 314 112 30 chr12 56653137 56653433 -87133022 + L1MC4a LINE L1 5727 6046 -1745 256 318 45 18 chr12 56653471 56653567 -87132888 + L2 LINE L2 3201 3302 -11 1965 138 10 3 chr12 56653567 56653863 -87132592 + AluSx SINE Alu 1 298 -14 256 318 45 18 chr12 56653863 56653876 -87132579 + L2 LINE L2 3302 3313 0 564 305 42 58 chr12 56654494 56654595 -87131860 + HAL1 LINE L1 840 941 -1566 6813 65 22 0 chr12 56654595 56655702 -87130753 + L1PA8 LINE L1 5035 6170 -2 564 305 42 58 chr12 56655702 56655961 -87130494 + HAL1 LINE L1 941 1194 -1313 324 163 0 0 chr12 56655965 56656070 -87130385 + (TA)n Simple_repeat Simple_repeat 1 105 0 240 278 0 0 chr12 56656071 56656161 -87130294 - L1MC4 LINE L1 -1339 6703 6614 25 31 0 0 chr12 56656656 56656688 -87129767 + AT_rich Low_complexity Low_complexity 1 32 0 899 253 55 88 chr12 56656938 56657464 -87128991 + MLT1J LTR MaLR 3 511 0 256 240 16 40 chr12 56657600 56657725 -87128730 + L1M4 LINE L1 2203 2324 -3822 22 0 0 0 chr12 56658228 56658250 -87128205 + AT_rich Low_complexity Low_complexity 1 22 0 255 310 44 15 chr12 56658345 56658548 -87127907 + L1M4 LINE L1 2957 3165 -2981 260 315 203 32 chr12 56658560 56659027 -87127428 + L2 LINE L2 357 903 -2411 215 111 0 44 chr12 56659513 56659558 -87126897 + (CCCCCT)n Simple_repeat Simple_repeat 2 44 0 1940 109 14 11 chr12 56659558 56659834 -87126621 - AluSg SINE Alu -33 277 1 3332 92 12 0 chr12 56660015 56660496 -87125959 - LTR15 LTR ERV1 -6 487 1 312 295 72 44 chr12 56660827 56661078 -87125377 + L2 LINE L2 2826 3083 -189 212 359 189 20 chr12 56661078 56661228 -87125227 + L2 LINE L2 2978 3101 -171 219 114 0 0 chr12 56661228 56661263 -87125192 + (TG)n Simple_repeat Simple_repeat 2 36 0 212 359 189 20 chr12 56661263 56661360 -87125095 + L2 LINE L2 3101 3267 -5 246 128 0 0 chr12 56661600 56661639 -87124816 + (TG)n Simple_repeat Simple_repeat 2 40 0 1760 143 113 71 chr12 56661764 56662241 -87124214 + MLT1D LTR MaLR 1 497 -8 294 341 44 0 chr12 56662524 56662659 -87123796 + MIR3 SINE MIR 48 188 -20 192 47 47 23 chr12 56663400 56663443 -87123012 + (TA)n Simple_repeat Simple_repeat 1 44 0 427 306 69 33 chr12 56663477 56663705 -87122750 - L1ME3A LINE L1 -233 5937 5719 1827 141 36 26 chr12 56663705 56664009 -87122446 + AluJo SINE Alu 1 307 -5 427 306 69 33 chr12 56664009 56664702 -87121753 - L1ME3A LINE L1 -451 5719 4946 1994 49 4 15 chr12 56664702 56664966 -87121489 - L1PA8 LINE L1 -2 6170 5910 427 306 69 33 chr12 56664966 56665117 -87121338 - L1ME3A LINE L1 -1224 4946 4802 875 187 48 0 chr12 56665121 56665287 -87121168 - MER20 DNA MER1_type 0 219 46 424 292 128 22 chr12 56665378 56665743 -87120712 + L1MEc LINE L1 2146 2502 -3713 4322 134 13 3 chr12 56665924 56666631 -87119824 - L1PA15 LINE L1 0 6165 5452 362 300 89 83 chr12 56667568 56667959 -87118496 + L1MEc LINE L1 3149 3536 -2679 2386 38 0 63 chr12 56667959 56668278 -87118177 + AluY SINE Alu 1 299 -12 362 300 89 83 chr12 56668278 56668614 -87117841 + L1MEc LINE L1 3536 3870 -2345 2912 106 22 2 chr12 56668614 56669066 -87117389 - L1MA9 LINE L1 -4 6308 5848 362 300 89 83 chr12 56669066 56669199 -87117256 + L1MEc LINE L1 3870 4001 -2214 25 0 0 0 chr12 56669199 56669224 -87117231 + AT_rich Low_complexity Low_complexity 1 25 0 884 190 0 0 chr12 56669304 56669446 -87117009 - AluJb SINE Alu -17 295 154 417 247 35 74 chr12 56669476 56669707 -87116748 - MLT1J LTR MaLR 0 511 290 2150 104 47 0 chr12 56669879 56670177 -87116278 + AluSp SINE Alu 1 312 -1 237 294 80 12 chr12 56670322 56670485 -87115970 + L1P5 LINE L1 5280 5453 -698 3065 117 2 2 chr12 56670671 56671117 -87115338 - MLT2A2 LTR ERVL 0 453 8 1323 17 23 0 chr12 56671125 56671298 -87115157 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 334 233 102 103 chr12 56671417 56671759 -87114696 - L1MC/D LINE L1 -537 5584 5291 564 253 96 56 chr12 56671777 56671975 -87114480 - MIR SINE MIR 0 262 57 1789 140 27 16 chr12 56672236 56672601 -87113854 - L1MA7 LINE L1 -6 6285 5917 458 306 76 16 chr12 56672773 56673325 -87113130 - L1MC/D LINE L1 -1310 4836 4252 371 277 102 7 chr12 56673396 56673533 -87112922 + L2 LINE L2 3158 3307 -6 311 316 29 22 chr12 56673614 56673750 -87112705 - L1MC/D LINE L1 -2011 4135 3999 465 243 125 0 chr12 56674019 56674163 -87112292 - L2 LINE L2 -841 2473 2312 213 317 0 0 chr12 56674253 56674313 -87112142 - L2 LINE L2 -1513 1801 1742 6740 74 8 0 chr12 56674367 56675365 -87111090 - L1PA7 LINE L1 -7 6147 5149 2463 99 34 5 chr12 56675365 56675584 -87110871 + L1P LINE L1 3288 3525 -2621 2108 117 0 0 chr12 56675584 56675900 -87110555 + AluSg SINE Alu 1 316 0 2463 99 34 5 chr12 56675900 56676062 -87110393 + L1P LINE L1 3525 3681 -2465 882 174 11 37 chr12 56676062 56676252 -87110203 + LTR39 LTR ERV1 599 783 0 2147 125 139 3 chr12 56677149 56677524 -87108931 - MSTA LTR MaLR 0 428 3 541 306 59 46 chr12 56678000 56678373 -87108082 + MLT1J LTR MaLR 8 385 -126 2234 123 0 0 chr12 56678491 56678791 -87107664 - AluSx SINE Alu -12 300 1 3806 156 48 14 chr12 56679762 56680463 -87105992 + LTR8A LTR ERV1 1 725 -2 649 186 123 93 chr12 56680854 56681090 -87105365 - LTR37B LTR ERV1 -161 307 65 * 3691 144 61 23 chr12 56681085 56681770 -87104685 - MER50 LTR ERV1 -23 711 1 316 246 0 0 chr12 56681770 56681839 -87104616 - LTR37B LTR ERV1 -394 74 6 647 171 29 11 chr12 56681875 56682224 -87104231 + CT-rich Low_complexity Low_complexity 1 355 0 1019 230 61 28 chr12 56683107 56683530 -87102925 + LTR29 LTR ERV1 137 596 -52 279 208 0 0 chr12 56683581 56683634 -87102821 + LTR49 LTR ERV1 543 595 0 244 211 0 0 chr12 56683694 56683746 -87102709 + LTR49 LTR ERV1 543 594 -1 1968 208 92 125 chr12 56683749 56684052 -87102403 + LTR7-int LTR ERV1 1 312 -6019 4102 103 32 25 chr12 56684052 56684683 -87101772 - MER41B LTR ERV1 0 635 1 1968 208 92 125 chr12 56684683 56685566 -87100889 + LTR7-int LTR ERV1 312 1148 -5183 360 0 0 0 chr12 56686539 56686579 -87099876 + (CA)n Simple_repeat Simple_repeat 1 40 0 1753 166 132 13 chr12 56686617 56686996 -87099459 - MSTA LTR MaLR -2 426 3 9077 140 11 34 chr12 56687011 56688613 -87097842 - MSTA-int LTR MaLR -13 1567 3 1708 180 150 3 chr12 56688615 56688988 -87097467 - MSTA LTR MaLR 0 428 1 2109 138 16 13 chr12 56689371 56689676 -87096779 + AluSq SINE Alu 1 306 -7 1717 165 36 7 chr12 56690051 56690354 -87096101 + AluJo SINE Alu 1 312 0 207 74 0 93 chr12 56691266 56691320 -87095135 + (TTCCC)n Simple_repeat Simple_repeat 3 51 0 2264 97 33 0 chr12 56691322 56691621 -87094834 - AluSc SINE Alu 0 309 1 5269 77 0 0 chr12 56693395 56694082 -87092373 - L1PA8 LINE L1 -13 6159 5473 335 301 17 29 chr12 56695522 56695695 -87090760 + LTR7-int LTR ERV1 6119 6289 -42 2345 80 3 20 chr12 56695699 56695999 -87090456 - AluSg1 SINE Alu -14 295 1 1294 229 46 29 chr12 56696151 56696610 -87089845 + LTR29 LTR ERV1 159 595 0 2103 158 41 14 chr12 56696826 56697264 -87089191 + LTR7 LTR ERV1 1 450 0 1652 179 35 3 chr12 56697276 56697561 -87088894 - AluJb SINE Alu -18 294 1 35 24 0 0 chr12 56697977 56698019 -87088436 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr12 56698092 56698119 -87088336 + AT_rich Low_complexity Low_complexity 1 27 0 1236 206 8 8 chr12 56698283 56698531 -87087924 - MER77 LTR ERV1 0 605 358 13932 190 21 6 chr12 56698556 56698905 -87087550 - L1PB1 LINE L1 -1 6866 6524 653 0 13 0 chr12 56698905 56698982 -87087473 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 13932 190 21 6 chr12 56698982 56704055 -87082400 - L1PB1 LINE L1 -343 6524 1339 3459 219 125 6 chr12 56704083 56705114 -87081341 - L1PB1 LINE L1 -5704 1159 6 1773 193 5 54 chr12 56705132 56705520 -87080935 - MER77 LTR ERV1 -234 371 3 2137 133 47 0 chr12 56705802 56706185 -87080270 - L1MA4A LINE L1 -2 6301 5901 3125 166 10 3 chr12 56706193 56706778 -87079677 - L1 LINE L1 -2042 5166 4578 1645 200 13 37 chr12 56706766 56706893 -87079562 + L1 LINE L1 4260 4389 -1757 * 2217 102 3 14 chr12 56706893 56707188 -87079267 - AluSg SINE Alu -18 292 1 1645 200 13 37 chr12 56707188 56707519 -87078936 + L1 LINE L1 4389 4707 -1439 354 311 20 13 chr12 56707641 56707792 -87078663 - L2 LINE L2 -768 2546 2395 1187 137 5 19 chr12 56707795 56708007 -87078448 + L1PA10 LINE L1 5811 6019 -149 7816 197 194 15 chr12 56709163 56709222 -87077233 - L1 LINE L1 -3317 3891 3844 1854 176 3 13 chr12 56709222 56709529 -87076926 - AluJb SINE Alu -8 304 1 7816 197 194 15 chr12 56709529 56710509 -87075946 - L1 LINE L1 -3364 3844 3041 225 0 0 0 chr12 56710509 56710534 -87075921 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7816 197 194 15 chr12 56710534 56712748 -87073707 - L1 LINE L1 -4167 3041 1 2939 178 55 3 chr12 56712774 56713427 -87073028 - L1MB3 LINE L1 -222 5961 5275 2079 145 0 7 chr12 56713543 56713871 -87072584 + AluSx SINE Alu 1 312 0 5418 133 28 27 chr12 56713871 56715248 -87071207 + L1PB1 LINE L1 4766 6146 -5 960 249 49 8 chr12 56715467 56715712 -87070743 - MIR SINE MIR 0 262 8 725 107 0 0 chr12 56716281 56716393 -87070062 + L1MA7 LINE L1 6175 6286 -5 465 161 0 0 chr12 56716924 56717005 -87069450 - AluSp/q SINE Alu -1 312 232 618 243 53 61 chr12 56717495 56717758 -87068697 + Charlie2 DNA MER1_type 70 330 -2532 * 2610 207 145 14 chr12 56717749 56718639 -87067816 + Charlie2 DNA MER1_type 1856 2862 0 331 316 54 43 chr12 56719567 56719959 -87066496 + L1MD2 LINE L1 3273 3668 -2478 11907 169 42 6 chr12 56719970 56723573 -87062882 - L1MA4 LINE L1 -1 6481 2752 2475 87 0 0 chr12 56723693 56724002 -87062453 - AluSc SINE Alu 0 309 1 231 36 0 0 chr12 56724047 56724075 -87062380 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1219 122 231 4 chr12 56724075 56724304 -87062151 - AluSg1 SINE Alu -28 281 1 5144 206 35 30 chr12 56724304 56724849 -87061606 - L1MA4 LINE L1 -3956 2372 1831 2213 129 3 0 chr12 56724849 56725160 -87061295 - AluSx SINE Alu 0 312 1 5144 206 35 30 chr12 56725160 56726886 -87059569 - L1MA4 LINE L1 -4497 1831 99 1475 192 41 24 chr12 56726886 56726937 -87059518 - AluJb SINE Alu -15 297 248 198 0 0 0 chr12 56726937 56726959 -87059496 + (GAGTG)n Simple_repeat Simple_repeat 5 26 0 1475 192 41 24 chr12 56726959 56727199 -87059256 - AluJb SINE Alu -64 248 1 5144 206 35 30 chr12 56727199 56727285 -87059170 - L1MA4 LINE L1 -6229 99 15 511 264 10 21 chr12 56727517 56727710 -87058745 + L1MD2 LINE L1 3890 4080 -2066 882 113 8 0 chr12 56727710 56727834 -87058621 + AluSp SINE Alu 1 125 -188 3208 122 27 4 chr12 56727934 56728925 -87057530 + L1MA2 LINE L1 5148 6303 -1 2887 150 64 6 chr12 56728944 56729472 -87056983 + L1MC1 LINE L1 5773 6331 -2 268 275 62 19 chr12 56729518 56729615 -87056840 + L1MD2 LINE L1 5254 5362 -802 327 49 0 0 chr12 56729615 56729656 -87056799 + (CA)n Simple_repeat Simple_repeat 1 41 0 268 275 62 19 chr12 56729656 56729718 -87056737 + L1MD2 LINE L1 5362 5420 -744 968 251 169 6 chr12 56730118 56730306 -87056149 + L1MD2 LINE L1 5935 6091 -268 1795 140 66 0 chr12 56730306 56730592 -87055863 + AluSx SINE Alu 1 305 -7 968 251 169 6 chr12 56730592 56730758 -87055697 + L1MD2 LINE L1 6091 6347 -12 557 14 0 0 chr12 56731058 56731127 -87055328 + L1P1 LINE L1 5713 5781 -374 20595 28 11 0 chr12 56731128 56734381 -87052074 + L1PA4 LINE L1 2900 6155 0 344 309 29 29 chr12 56734461 56734597 -87051858 + L1ME3A LINE L1 6026 6161 -9 723 191 73 22 chr12 56734709 56734887 -87051568 - MER20 DNA MER1_type -32 187 1 1767 176 0 30 chr12 56734992 56735294 -87051161 + AluJo SINE Alu 1 293 -19 306 0 0 0 chr12 56735687 56735721 -87050734 + (CA)n Simple_repeat Simple_repeat 2 35 0 347 333 46 0 chr12 56736627 56736735 -87049720 + L2 LINE L2 3155 3267 -5 2225 88 7 0 chr12 56736927 56737221 -87049234 + AluY SINE Alu 1 296 -15 424 273 39 47 chr12 56737363 56737491 -87048964 + L2 LINE L2 3171 3297 -16 257 243 43 0 chr12 56737833 56737903 -87048552 + L1M1 LINE L1 5696 5768 -537 1863 9 0 0 chr12 56738010 56738232 -87048223 - L1P1 LINE L1 -577 5578 5357 1047 42 0 0 chr12 56738231 56738414 -87048041 + L1PA4 LINE L1 5997 6164 0 * 226 281 18 0 chr12 56738882 56738939 -87047516 - LTR67 LTR ERVL -389 168 111 389 271 18 24 chr12 56739082 56739252 -87047203 - L1M4 LINE L1 -1910 4236 4068 845 204 19 12 chr12 56739385 56739547 -87046908 - FRAM SINE Alu -14 162 1 269 191 0 0 chr12 56740507 56740554 -87045901 - MER74B LTR ERVL -31 591 545 * 2336 178 14 11 chr12 56740550 56740993 -87045462 - MER74A LTR ERVL -114 444 1 3442 226 70 60 chr12 56741022 56742187 -87044268 - HERVL74 LTR ERVL -589 5096 3921 1469 236 28 21 chr12 56742242 56742631 -87043824 - HERVL74 LTR ERVL -2115 3570 3179 39405 66 4 0 chr12 56742654 56748767 -87037688 + L1PA5 LINE L1 11 6148 -6 431 196 43 0 chr12 56748790 56748882 -87037573 - HERVL74 LTR ERVL -2510 3175 3080 344 242 30 61 chr12 56748882 56748938 -87037517 - L1M4 LINE L1 -3322 2824 2768 931 313 3 10 chr12 56748938 56749242 -87037213 - AluJb SINE Alu 0 302 1 344 242 30 61 chr12 56749242 56749317 -87037138 - L1M4 LINE L1 -3378 2768 2697 2483 246 46 28 chr12 56849318 56849472 -86936983 - L1M4 LINE L1 -2672 3474 3324 2017 130 3 3 chr12 56849472 56849809 -86936646 + AluSx SINE Alu 1 337 0 2483 246 46 28 chr12 56849809 56850542 -86935913 - L1M4 LINE L1 -2822 3324 2570 4815 24 4 2 chr12 56850642 56851192 -86935263 - L1PA4 LINE L1 -60 6095 5545 1832 240 141 56 chr12 56851186 56851472 -86934983 + L1MEc LINE L1 1548 1808 -4588 * 1630 139 0 20 chr12 56851472 56851762 -86934693 + AluJb SINE Alu 48 312 0 1832 240 141 56 chr12 56851762 56852361 -86934094 + L1MEc LINE L1 1808 2508 -3888 243 263 18 0 chr12 56853655 56853712 -86932743 + GA-rich Low_complexity Low_complexity 2 59 0 1021 264 87 20 chr12 56854393 56854737 -86931718 - HERVL74 LTR ERVL -1364 4400 4034 1071 262 93 53 chr12 56854746 56854972 -86931483 - L1M4 LINE L1 -2941 3205 2989 1390 158 22 5 chr12 56854972 56855194 -86931261 - L1MC1 LINE L1 0 6333 6108 1071 262 93 53 chr12 56855194 56855640 -86930815 - L1M4 LINE L1 -3157 2989 2496 2414 70 3 13 chr12 56855640 56855940 -86930515 - AluSp SINE Alu -16 297 1 1071 262 93 53 chr12 56855940 56856040 -86930415 - L1M4 LINE L1 -3650 2496 2401 788 239 7 7 chr12 56856229 56856384 -86930071 - FRAM SINE Alu -11 155 1 28 0 0 0 chr12 56856417 56856445 -86930010 + AT_rich Low_complexity Low_complexity 1 28 0 791 264 79 58 chr12 56856497 56856774 -86929681 - L1MEd LINE L1 -5835 284 2 409 336 7 7 chr12 56856789 56856929 -86929526 - MIR SINE MIR -106 156 17 1258 103 0 64 chr12 56857765 56857968 -86928487 + L1PA8 LINE L1 5983 6172 0 1652 164 4 4 chr12 56858091 56858371 -86928084 + AluJb SINE Alu 24 303 -9 280 188 16 31 chr12 56858376 56858440 -86928015 - MER116 DNA Mariner -17 63 1 201 141 16 62 chr12 56858448 56858512 -86927943 + A-rich Low_complexity Low_complexity 4 64 0 1833 140 0 4 chr12 56860189 56860468 -86925987 - AluSx SINE Alu -5 307 30 1140 154 0 0 chr12 56860700 56860875 -86925580 - AluJo SINE Alu -137 175 1 198 277 85 32 chr12 56861028 56861122 -86925333 - MIR SINE MIR -46 216 118 366 80 0 0 chr12 56861186 56861236 -86925219 + (CA)n Simple_repeat Simple_repeat 1 50 0 319 314 46 26 chr12 56861446 56861599 -86924856 - L3b LINE CR1 -186 1397 1242 1264 107 0 0 chr12 56862326 56862503 -86923952 - L1MA6 LINE L1 0 6300 6124 243 0 0 0 chr12 56863441 56863468 -86922987 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2102 128 0 3 chr12 56863656 56863945 -86922510 - AluSq SINE Alu -20 293 6 844 191 19 6 chr12 56863952 56864114 -86922341 - L1M3 LINE L1 -564 5607 5444 2528 189 20 0 chr12 56864272 56864877 -86921578 - L1M3 LINE L1 -725 5443 4824 805 204 0 0 chr12 56864864 56865011 -86921444 - L1M3 LINE L1 -1980 4166 4020 * 642 306 36 22 chr12 56865020 56865295 -86921160 + L1ME3A LINE L1 5636 5914 -248 24 32 0 0 chr12 56865542 56865573 -86920882 + AT_rich Low_complexity Low_complexity 1 31 0 376 267 0 40 chr12 56865604 56865705 -86920750 - L2 LINE L2 -1 3312 3216 695 274 45 44 chr12 56865932 56866304 -86920151 - L1MEd LINE L1 -1071 1419 950 1616 156 0 7 chr12 56866304 56866573 -86919882 - AluSx SINE Alu -3 309 43 352 286 115 44 chr12 56866604 56866786 -86919669 - L1ME3A LINE L1 -14 6156 5962 1969 160 0 19 chr12 56866866 56867184 -86919271 - AluJb SINE Alu 0 312 1 1165 280 30 38 chr12 56867188 56867435 -86919020 - L1ME3A LINE L1 -232 5938 5691 2115 154 91 11 chr12 56867435 56867799 -86918656 - MSTD LTR MaLR -3 393 1 1165 280 30 38 chr12 56867799 56868054 -86918401 - L1ME3A LINE L1 -479 5691 5440 455 312 140 43 chr12 56868605 56869291 -86917164 - L2 LINE L2 -182 3090 2347 359 306 65 0 chr12 56869977 56870085 -86916370 - L2 LINE L2 -16 3256 3142 570 244 99 26 chr12 56870200 56870424 -86916031 - L1ME1 LINE L1 -36 6129 5885 1688 143 86 7 chr12 56870434 56870713 -86915742 - AluJo SINE Alu -9 303 3 881 133 6 17 chr12 56870769 56870949 -86915506 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 312 159 0 45 chr12 56870949 56871037 -86915418 + CT-rich Low_complexity Low_complexity 2 85 0 2692 231 83 15 chr12 56871137 56871733 -86914722 - L1ME3A LINE L1 -1743 4403 3734 10485 55 2 0 chr12 56871733 56873754 -86912701 + L1PA5 LINE L1 4123 6143 -11 2692 231 83 15 chr12 56873754 56873980 -86912475 - L1ME3A LINE L1 -2412 3734 3525 498 260 30 115 chr12 56874271 56874601 -86911854 - L1ME3A LINE L1 -108 6013 5712 819 196 79 137 chr12 56874604 56874884 -86911571 - L2 LINE L2 -1 3312 3060 2203 101 22 35 chr12 56874884 56875201 -86911254 + AluSq SINE Alu 1 313 0 819 196 79 137 chr12 56875201 56875313 -86911142 - L2 LINE L2 -253 3060 2943 653 260 35 95 chr12 56875331 56875627 -86910828 - L1ME3A LINE L1 -504 5658 5346 2032 85 4 11 chr12 56875627 56875897 -86910558 - AluSp SINE Alu 0 313 46 653 260 35 95 chr12 56875897 56876016 -86910439 - L1ME3A LINE L1 -816 5346 5221 2003 135 21 0 chr12 56876016 56876305 -86910150 - AluJb SINE Alu -17 295 1 653 260 35 95 chr12 56876305 56876591 -86909864 - L1ME3A LINE L1 -941 5221 5043 1245 256 133 21 chr12 56876598 56877266 -86909189 - L2 LINE L2 -2 3311 2542 1632 125 6 70 chr12 56877276 56877603 -86908852 + L1 LINE L1 5096 5401 -745 469 262 35 68 chr12 56877603 56877771 -86908684 - L2 LINE L2 -780 2534 2312 888 141 0 15 chr12 56877771 56877906 -86908549 - FLAM_C SINE Alu 0 133 1 469 262 35 68 chr12 56877906 56877997 -86908458 - L2 LINE L2 -1002 2312 2220 216 0 0 0 chr12 56878048 56878072 -86908383 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2226 125 6 0 chr12 56878072 56878383 -86908072 - AluSq SINE Alu 0 313 1 285 231 0 26 chr12 56878384 56878462 -86907993 - L1ME3A LINE L1 -1119 5027 4952 586 34 8 60 chr12 56879894 56880011 -86906444 + (TTCTC)n Simple_repeat Simple_repeat 5 115 0 294 29 0 0 chr12 56881608 56881643 -86904812 + (TG)n Simple_repeat Simple_repeat 1 35 0 663 308 97 65 chr12 56882156 56882539 -86903916 + L1MEd LINE L1 2 416 -5703 1557 169 134 0 chr12 56882539 56882800 -86903655 + AluJo SINE Alu 1 296 -6 663 308 97 65 chr12 56882800 56883065 -86903390 + L1MEd LINE L1 416 671 -5448 547 278 73 46 chr12 56883200 56883623 -86902832 + L1MEd LINE L1 895 1364 -4862 282 73 0 0 chr12 56883738 56883779 -86902676 + (TA)n Simple_repeat Simple_repeat 2 42 0 469 257 85 18 chr12 56883781 56884064 -86902391 + L1ME1 LINE L1 1358 1669 -4871 246 214 0 0 chr12 56884170 56884226 -86902229 + L1ME1 LINE L1 4809 4864 -1676 1053 193 17 21 chr12 56884253 56884492 -86901963 - L1MB3 LINE L1 -2 6181 5944 2832 201 53 75 chr12 56884496 56884835 -86901620 + L1ME1 LINE L1 5246 5591 -969 429 20 0 0 chr12 56884835 56884885 -86901570 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 309 138 121 0 chr12 56884885 56884943 -86901512 - AluY SINE Alu -103 198 134 2832 201 53 75 chr12 56884943 56885560 -86900895 + L1ME1 LINE L1 5589 6234 -326 204 105 123 0 chr12 56885658 56885715 -86900740 + (AATAG)n Simple_repeat Simple_repeat 4 67 0 442 297 161 0 chr12 56885731 56885886 -86900569 + MER5A DNA MER1_type 10 189 0 1696 101 13 4 chr12 56886383 56886611 -86899844 - AluSq SINE Alu -70 243 14 379 323 108 8 chr12 56886633 56886986 -86899469 - HAL1 LINE L1 -938 1569 1182 369 310 203 5 chr12 56889769 56889956 -86896499 + L2 LINE L2 2325 2548 -766 1336 54 12 0 chr12 56890190 56890396 -86896059 + L1PA8 LINE L1 5981 6188 0 430 270 0 35 chr12 56891972 56892087 -86894368 - L2 LINE L2 -16 3297 3187 274 228 0 0 chr12 56892505 56892562 -86893893 - L2 LINE L2 0 3313 3257 274 280 183 0 chr12 56893177 56893270 -86893185 + L2 LINE L2 3156 3265 -7 2357 95 0 7 chr12 56893827 56894132 -86892323 + AluSg SINE Alu 1 303 -7 351 300 137 39 chr12 56894406 56894639 -86891816 + MIR SINE MIR 2 257 -5 851 267 31 4 chr12 56897507 56897732 -86888723 + MIR SINE MIR 15 245 -17 4631 62 18 0 chr12 56898007 56898570 -86887885 - L1PA5 LINE L1 0 6154 5582 486 296 60 20 chr12 56898689 56898888 -86887567 - MIR SINE MIR -53 209 3 1053 159 6 0 chr12 56899103 56899260 -86887195 + AluJo SINE Alu 1 158 -154 1828 159 10 3 chr12 56899437 56899732 -86886723 - AluJo SINE Alu -15 297 1 349 375 74 68 chr12 56900781 56901104 -86885351 + L2 LINE L2 2871 3195 -77 209 269 58 0 chr12 56901195 56901247 -86885208 + L2 LINE L2 3242 3296 -17 1001 192 37 23 chr12 56901278 56901492 -86884963 - L1PA16 LINE L1 0 6166 5950 183 310 0 0 chr12 56902076 56902134 -86884321 - L2 LINE L2 -1 3271 3214 203 348 33 11 chr12 56903659 56903751 -86882704 + L3b LINE CR1 1411 1504 -79 378 280 150 0 chr12 56904304 56904404 -86882051 + L2 LINE L2 3140 3254 -18 1823 163 17 0 chr12 56905022 56905316 -86881139 + AluJb SINE Alu 1 299 -13 201 147 0 0 chr12 56905337 56905371 -86881084 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 183 293 69 17 chr12 56905404 56905462 -86880993 - L3b LINE CR1 -92 1491 1431 2159 106 0 0 chr12 56905988 56906289 -86880166 - L1PA16 LINE L1 -62 6104 5804 242 242 21 53 chr12 56908978 56909073 -86877382 + GA-rich Low_complexity Low_complexity 3 94 0 197 125 0 21 chr12 56909201 56909249 -86877206 + (CGG)n Simple_repeat Simple_repeat 3 49 0 22 88 0 0 chr12 56909889 56909946 -86876509 + GC_rich Low_complexity Low_complexity 1 57 0 288 0 0 0 chr12 56911794 56911826 -86874629 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 317 246 192 15 chr12 56912688 56912818 -86873637 + MIR SINE MIR 36 188 -74 186 103 0 0 chr12 56912818 56912847 -86873608 + (CAA)n Simple_repeat Simple_repeat 2 30 0 858 138 119 46 chr12 56914186 56914404 -86872051 - MER96B DNA MER1_type? -183 234 1 213 218 0 0 chr12 56917048 56917064 -86869391 + GA-rich Low_complexity Low_complexity 1 16 -39 1738 132 48 42 chr12 56917064 56917374 -86869081 + AluSx SINE Alu 1 312 0 213 218 0 0 chr12 56917374 56917412 -86869043 + GA-rich Low_complexity Low_complexity 15 55 0 21 0 0 0 chr12 56927022 56927043 -86859412 + GC_rich Low_complexity Low_complexity 1 21 0 290 109 36 0 chr12 56927276 56927331 -86859124 + GA-rich Low_complexity Low_complexity 3 59 0 222 266 13 38 chr12 56928439 56928518 -86857937 + GA-rich Low_complexity Low_complexity 4 80 0 264 261 0 0 chr12 56930900 56930965 -86855490 + CT-rich Low_complexity Low_complexity 3 67 0 237 33 0 0 chr12 56932855 56932885 -86853570 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 277 0 0 chr12 56933446 56933493 -86852962 + G-rich Low_complexity Low_complexity 2 48 0 420 20 0 0 chr12 56934595 56934644 -86851811 + (TG)n Simple_repeat Simple_repeat 2 50 0 194 352 132 5 chr12 56936524 56936737 -86849718 - L3b LINE CR1 -95 1488 1249 677 262 119 52 chr12 56938300 56938644 -86847811 - MLT1J1 LTR MaLR -33 413 47 246 95 0 0 chr12 56940322 56940364 -86846091 + (A)n Simple_repeat Simple_repeat 1 42 0 216 0 0 0 chr12 56941297 56941321 -86845134 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr12 56943519 56943541 -86842914 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 56947827 56947848 -86838607 + GC_rich Low_complexity Low_complexity 1 21 0 246 62 0 0 chr12 56949769 56949801 -86836654 + (CGG)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr12 56953332 56953363 -86833092 + AT_rich Low_complexity Low_complexity 1 31 0 325 303 104 83 chr12 56959652 56959950 -86826505 + L1M4c LINE L1 850 1513 -1230 232 207 0 52 chr12 56960277 56960335 -86826120 + CT-rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr12 56965085 56965107 -86821348 + (A)n Simple_repeat Simple_repeat 1 22 0 182 37 37 0 chr12 56965365 56965392 -86821063 + (TGGGGG)n Simple_repeat Simple_repeat 4 31 0 23 54 0 0 chr12 56965690 56965727 -86820728 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 56965987 56966021 -86820434 + AT_rich Low_complexity Low_complexity 1 34 0 252 149 0 0 chr12 56966082 56966129 -86820326 + (GA)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr12 56972739 56972768 -86813687 + AT_rich Low_complexity Low_complexity 1 29 0 251 154 0 19 chr12 56975344 56975396 -86811059 + GA-rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr12 56977645 56977673 -86808782 + GC_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 56980179 56980212 -86806243 + C-rich Low_complexity Low_complexity 2 34 0 522 0 0 0 chr12 56980251 56980309 -86806146 + (TC)n Simple_repeat Simple_repeat 1 58 0 294 0 0 61 chr12 56980449 56980498 -86805957 + (CCG)n Simple_repeat Simple_repeat 2 47 0 201 71 143 0 chr12 56980554 56980596 -86805859 + (CAGCC)n Simple_repeat Simple_repeat 4 51 0 219 242 0 0 chr12 56982731 56982793 -86803662 + GA-rich Low_complexity Low_complexity 2 63 0 283 230 0 27 chr12 56983279 56983353 -86803102 + A-rich Low_complexity Low_complexity 2 73 0 243 0 0 0 chr12 56983356 56983383 -86803072 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 342 259 24 102 chr12 56983625 56983791 -86802664 + L1 LINE L1 3015 3167 -2979 25 51 0 0 chr12 56984033 56984072 -86802383 + AT_rich Low_complexity Low_complexity 1 39 0 213 213 0 21 chr12 56985004 56985051 -86801404 + G-rich Low_complexity Low_complexity 4 49 0 218 173 19 39 chr12 56989316 56989368 -86797087 + G-rich Low_complexity Low_complexity 2 52 0 216 0 0 0 chr12 56989616 56989640 -86796815 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 215 283 0 0 chr12 56989688 56989741 -86796714 + GA-rich Low_complexity Low_complexity 2 54 0 183 184 0 0 chr12 56992119 56992157 -86794298 + CT-rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr12 56992809 56992834 -86793621 + (TA)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr12 56993963 56993988 -86792467 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 56995283 56995303 -86791152 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 417 297 53 76 chr12 56997321 56997632 -86788823 - L1M4 LINE L1 -1187 3347 982 414 0 0 0 chr12 56998376 56998422 -86788033 + (TG)n Simple_repeat Simple_repeat 1 46 0 186 43 0 0 chr12 56998422 56998445 -86788010 + (GA)n Simple_repeat Simple_repeat 1 23 0 34 0 0 0 chr12 57001396 57001430 -86785025 + AT_rich Low_complexity Low_complexity 1 34 0 314 286 31 0 chr12 57002484 57002582 -86783873 + C-rich Low_complexity Low_complexity 1 101 0 188 119 0 48 chr12 57002882 57002924 -86783531 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 665 318 19 26 chr12 57206784 57207095 -86579360 + AluJb SINE Alu 3 311 -1 283 211 0 0 chr12 57207096 57207153 -86579302 + L1 LINE L1 2773 2829 -3317 425 176 59 0 chr12 57207154 57207239 -86579216 + HERVL74 LTR ERVL 3086 3175 -2510 41916 68 4 1 chr12 57207254 57213376 -86573079 - L1PA5 LINE L1 0 6154 11 1632 231 27 27 chr12 57213386 57213788 -86572667 + HERVL74 LTR ERVL 3169 3570 -2115 3859 228 72 61 chr12 57213821 57215007 -86571448 + HERVL74 LTR ERVL 3897 5096 -589 762 132 41 0 chr12 57215022 57215159 -86571296 + MER74B LTR ERVL 1 128 -430 2013 204 100 132 chr12 57215261 57215466 -86570989 + LTR7-int LTR ERV1 95 305 -6026 4420 109 32 25 chr12 57215466 57216097 -86570358 - MER41B LTR ERV1 0 635 1 2013 204 100 132 chr12 57216097 57216980 -86569475 + LTR7-int LTR ERV1 305 1148 -5183 360 0 0 0 chr12 57217953 57217993 -86568462 + (CA)n Simple_repeat Simple_repeat 1 40 0 2065 158 132 13 chr12 57218031 57218410 -86568045 - MSTA LTR MaLR -2 426 3 9731 140 12 34 chr12 57218425 57220025 -86566430 - MSTA-int LTR MaLR -13 1567 3 1879 180 150 3 chr12 57220027 57220400 -86566055 - MSTA LTR MaLR 0 428 1 2085 138 16 13 chr12 57220783 57221088 -86565367 + AluSq SINE Alu 1 306 -7 1686 165 36 7 chr12 57221463 57221766 -86564689 + AluJo SINE Alu 1 312 0 267 276 109 47 chr12 57221863 57222055 -86564400 + LTR7-int LTR ERV1 3335 3538 -4218 207 74 0 93 chr12 57222678 57222732 -86563723 + (TTCCC)n Simple_repeat Simple_repeat 3 51 0 2247 100 33 0 chr12 57222734 57223033 -86563422 - AluSc SINE Alu 0 309 1 264 203 25 63 chr12 57223625 57223704 -86562751 + LTR7-int LTR ERV1 3344 3419 -3230 5636 77 0 0 chr12 57224805 57225492 -86560963 - L1PA8 LINE L1 -13 6159 5473 389 280 14 82 chr12 57226934 57227111 -86559344 + LTR7-int LTR ERV1 6119 6282 -49 2346 80 3 20 chr12 57227111 57227411 -86559044 - AluSg1 SINE Alu -14 295 1 389 280 14 82 chr12 57227411 57227440 -86559015 + LTR7-int LTR ERV1 6282 6311 -20 1474 230 43 35 chr12 57227563 57228022 -86558433 + LTR29 LTR ERV1 159 595 0 2296 158 41 14 chr12 57228238 57228676 -86557779 + LTR7 LTR ERV1 1 450 0 1633 179 35 3 chr12 57228688 57228973 -86557482 - AluJb SINE Alu -18 294 1 35 24 0 0 chr12 57229389 57229431 -86557024 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr12 57229504 57229531 -86556924 + AT_rich Low_complexity Low_complexity 1 27 0 1343 206 8 8 chr12 57229695 57229943 -86556512 - MER77 LTR ERV1 0 605 358 22 0 0 0 chr12 57229956 57229978 -86556477 + AT_rich Low_complexity Low_complexity 1 22 0 1791 178 3 13 chr12 57230112 57230415 -86556040 - AluJb SINE Alu -12 300 1 8560 196 212 13 chr12 57230415 57231399 -86555056 - L1 LINE L1 -3370 3838 3051 225 0 0 0 chr12 57231399 57231424 -86555031 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 8560 196 212 13 chr12 57231424 57233638 -86552817 - L1 LINE L1 -4157 3051 1 3353 194 40 2 chr12 57233664 57234914 -86551541 - L1MB3 LINE L1 -222 5961 4670 43871 31 21 1 chr12 57235633 57241659 -86544796 + L1HS LINE L1 4 6154 -1 195 42 0 0 chr12 57241661 57241685 -86544770 + (A)n Simple_repeat Simple_repeat 1 24 0 1636 229 24 19 chr12 57241701 57242073 -86544382 + MLT1A2 LTR MaLR 1 374 0 221 260 57 73 chr12 57243601 57243724 -86542731 + MIR SINE MIR 84 204 -58 2577 230 93 13 chr12 57244080 57244694 -86541761 - MER76 LTR ERV -22 666 4 2566 226 16 13 chr12 57245015 57245597 -86540858 - L1ME1 LINE L1 -14 6166 5573 386 297 94 0 chr12 57245765 57245893 -86540562 + LTR67 LTR ERVL 30 169 -388 253 276 35 77 chr12 57246121 57246291 -86540164 + LTR67 LTR ERVL 366 528 -29 23 33 0 0 chr12 57246296 57246326 -86540129 + AT_rich Low_complexity Low_complexity 1 30 0 7589 52 3 1 chr12 57246534 57247539 -86538916 + L1PA5 LINE L1 5141 6147 -7 15391 195 39 6 chr12 57249922 57250210 -86536245 - L1PB1 LINE L1 -62 6805 6528 653 0 13 0 chr12 57250210 57250287 -86536168 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 15391 195 39 6 chr12 57250287 57256419 -86530036 - L1PB1 LINE L1 -339 6528 6 1866 191 5 66 chr12 57256437 57256830 -86529625 - MER77 LTR ERV1 -234 371 3 2335 133 47 0 chr12 57257112 57257495 -86528960 - L1MA4A LINE L1 -2 6301 5901 3125 166 10 3 chr12 57257503 57258088 -86528367 - L1 LINE L1 -2042 4104 3516 * 5416 149 25 32 chr12 57258076 57258203 -86528252 + L1PB1 LINE L1 4260 4386 -1765 2217 102 3 14 chr12 57258203 57258498 -86527957 - AluSg SINE Alu -18 292 1 5416 149 25 32 chr12 57258498 57258897 -86527558 + L1PB1 LINE L1 4386 4787 -1364 2089 145 0 7 chr12 57258897 57259229 -86527226 + AluSx SINE Alu 1 312 0 5416 149 25 32 chr12 57259229 57260606 -86525849 + L1PB1 LINE L1 4787 6146 -5 960 249 49 8 chr12 57260825 57261070 -86525385 - MIR SINE MIR 0 262 8 725 107 0 0 chr12 57261639 57261751 -86524704 + L1MA7 LINE L1 6175 6286 -5 451 173 0 0 chr12 57262282 57262363 -86524092 - AluSp/q SINE Alu -1 312 232 573 251 58 45 chr12 57262853 57263096 -86523359 + Charlie2 DNA MER1_type 70 315 -2467 2610 207 145 14 chr12 57263107 57263997 -86522458 + Charlie2 DNA MER1_type 1856 2862 0 320 319 54 43 chr12 57264925 57265317 -86521138 + L1M4 LINE L1 3273 3668 -2478 12938 184 43 22 chr12 57265328 57269249 -86517206 - L1MA4 LINE L1 -1 6481 2645 2470 83 0 10 chr12 57269249 57269561 -86516894 - AluSc SINE Alu 0 309 1 12938 184 43 22 chr12 57269561 57269606 -86516849 - L1MA4 LINE L1 -3837 2645 2602 231 36 0 0 chr12 57269606 57269634 -86516821 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1219 122 231 4 chr12 57269634 57269863 -86516592 - AluSg1 SINE Alu -28 281 1 12938 184 43 22 chr12 57269863 57270408 -86516047 - L1MA4 LINE L1 -3880 2602 2070 2303 122 0 0 chr12 57270408 57270720 -86515735 - AluSx SINE Alu 0 312 1 12938 184 43 22 chr12 57270720 57272446 -86514009 - L1MA4 LINE L1 -4412 2070 98 1475 192 41 24 chr12 57272446 57272497 -86513958 - AluJb SINE Alu -15 297 248 198 0 0 0 chr12 57272497 57272519 -86513936 + (GAGTG)n Simple_repeat Simple_repeat 5 26 0 1475 192 41 24 chr12 57272519 57272759 -86513696 - AluJb SINE Alu -64 248 1 12938 184 43 22 chr12 57272759 57272845 -86513610 - L1MA4 LINE L1 -6384 98 15 656 236 10 111 chr12 57273077 57273270 -86513185 + L1M4 LINE L1 3890 4101 -2045 2176 112 7 0 chr12 57273270 57273566 -86512889 + AluSp SINE Alu 1 298 -15 3583 45 0 5 chr12 57273566 57274010 -86512445 + L1PA5 LINE L1 5713 6154 0 656 236 10 111 chr12 57274010 57274201 -86512254 + L1M4 LINE L1 4099 4236 -1910 226 281 18 0 chr12 57274344 57274401 -86512054 + LTR67 LTR ERVL 111 168 -389 238 279 81 9 chr12 57274677 57274788 -86511667 + LTR67 LTR ERVL 439 557 0 1046 83 35 4 chr12 57274869 57275052 -86511403 - L1PA4 LINE L1 0 6172 5997 * 1889 5 0 0 chr12 57275051 57275273 -86511182 + L1P1 LINE L1 5357 5578 -577 257 243 43 0 chr12 57275380 57275450 -86511005 - L1M1 LINE L1 -537 5768 5696 424 273 39 47 chr12 57275792 57275920 -86510535 - L2 LINE L2 -16 3297 3171 2216 89 7 0 chr12 57276062 57276355 -86510100 - AluY SINE Alu -16 295 1 347 333 46 0 chr12 57276547 57276655 -86509800 - L2 LINE L2 -5 3267 3155 288 0 0 0 chr12 57277561 57277593 -86508862 + (TG)n Simple_repeat Simple_repeat 2 33 0 1795 169 0 30 chr12 57277986 57278288 -86508167 - AluJo SINE Alu -19 293 1 725 191 73 22 chr12 57278393 57278571 -86507884 + MER20 DNA MER1_type 1 187 -32 344 309 29 29 chr12 57278683 57278819 -86507636 - L1ME3A LINE L1 -9 6161 6026 20590 29 0 3 chr12 57278899 57282152 -86504303 - L1PA4 LINE L1 0 6155 2900 557 14 0 0 chr12 57282153 57282222 -86504233 - L1P2 LINE L1 -374 5781 5713 551 243 34 0 chr12 57282522 57282670 -86503785 - L1MD2 LINE L1 -12 6347 6195 414 284 85 0 chr12 57282688 57282921 -86503534 - AluSc SINE Alu 0 331 81 23 0 0 0 chr12 57283546 57283569 -86502886 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 57283887 57283907 -86502548 + (C)n Simple_repeat Simple_repeat 1 20 0 1893 133 65 0 chr12 57283998 57284312 -86502143 - AluSx SINE Alu 0 333 1 661 250 64 11 chr12 57284312 57284500 -86501955 - L1MD2 LINE L1 -227 6132 5935 268 275 62 19 chr12 57284900 57284962 -86501493 - L1MD2 LINE L1 -742 5420 5362 345 47 0 0 chr12 57284962 57285005 -86501450 + (TG)n Simple_repeat Simple_repeat 1 43 0 268 275 62 19 chr12 57285005 57285102 -86501353 - L1MD2 LINE L1 -800 5362 5254 2887 150 64 6 chr12 57285148 57285676 -86500779 - L1MC1 LINE L1 -2 6331 5773 3208 99 54 0 chr12 57285695 57286192 -86500263 - L1MA2 LINE L1 -1 6303 5780 2434 142 1 4 chr12 57286193 57286720 -86499735 - L1MA2 LINE L1 -665 5639 5114 892 209 6 0 chr12 57286776 57286939 -86499516 - FRAM SINE Alu -13 163 1 685 163 261 16 chr12 57287898 57288082 -86498373 - MER74A LTR ERVL -27 531 303 943 129 25 12 chr12 57289593 57289756 -86496699 + L1MC1 LINE L1 5695 5859 -474 6958 162 6 5 chr12 57289763 57292030 -86494425 - L1PA15 LINE L1 -32 6133 3865 27 0 0 0 chr12 57292032 57292059 -86494396 + AT_rich Low_complexity Low_complexity 1 27 0 29247 106 7 17 chr12 57292066 57293326 -86493129 - L1PA7 LINE L1 -13 6456 5185 2340 98 0 0 chr12 57293326 57293623 -86492832 - AluY SINE Alu -14 297 1 29247 106 7 17 chr12 57293623 57297961 -86488494 - L1PA7 LINE L1 -1284 5185 918 40594 54 1 1 chr12 57298002 57304149 -86482306 - L1PA4 LINE L1 -2 6153 2 4886 144 6 3 chr12 57304166 57304542 -86481913 - L1PA7 LINE L1 -5670 791 418 279 0 0 0 chr12 57304542 57304573 -86481882 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4886 144 6 3 chr12 57304573 57304980 -86481475 - L1PA7 LINE L1 -6043 418 5 356 302 69 0 chr12 57306172 57306288 -86480167 + L2 LINE L2 3136 3259 -13 193 256 167 22 chr12 57306315 57306405 -86480050 + MIR3 SINE MIR 91 193 -15 325 115 19 0 chr12 57307419 57307471 -86478984 + MSTD-int LTR MaLR 1682 1734 -1 1626 219 41 25 chr12 57307586 57307951 -86478504 + MSTD LTR MaLR 26 396 0 905 171 0 6 chr12 57307958 57308139 -86478316 - L1MDb LINE L1 -2171 4235 4056 3081 166 24 66 chr12 57308143 57308782 -86477673 + LTR9 LTR ERV1 1 612 0 1345 235 38 47 chr12 57308784 57309182 -86477273 - L1MDb LINE L1 -2354 4052 3657 1978 45 0 0 chr12 57309182 57309425 -86477030 - L1PA4 LINE L1 -1 6154 5912 1345 235 38 47 chr12 57309425 57309499 -86476956 - L1MDb LINE L1 -2749 3657 3584 4427 225 88 44 chr12 57309537 57309620 -86476835 - L1MDb LINE L1 -3938 2468 2390 1963 94 4 4 chr12 57309620 57309886 -86476569 - AluY SINE Alu -8 303 38 4427 225 88 44 chr12 57309886 57312175 -86474280 - L1MDb LINE L1 -4016 2390 11 197 261 0 0 chr12 57312505 57312551 -86473904 + L3 LINE CR1 1274 1319 -258 269 143 0 0 chr12 57312571 57312613 -86473842 - L1MDb LINE L1 -5344 1065 1024 868 312 36 46 chr12 57312959 57313347 -86473108 + L2 LINE L2 2930 3313 0 504 254 0 0 chr12 57313378 57313500 -86472955 - L1M4 LINE L1 -1584 4562 4441 1667 152 11 70 chr12 57313509 57313864 -86472591 - Ricksha DNA DNA -2350 896 563 * 1830 210 28 34 chr12 57313546 57314129 -86472326 - MLT2D LTR ERVL -19 534 1 2126 238 19 37 chr12 57314139 57314301 -86472154 - L1M4 LINE L1 -1716 4430 4267 1878 142 64 0 chr12 57314301 57314583 -86471872 - AluSx SINE Alu -12 300 1 2126 238 19 37 chr12 57314583 57314906 -86471549 - L1M4 LINE L1 -1879 4267 3958 306 0 0 0 chr12 57314906 57314940 -86471515 + (TG)n Simple_repeat Simple_repeat 2 35 0 2126 238 19 37 chr12 57314940 57315121 -86471334 - L1M4 LINE L1 -2188 3958 3775 248 237 113 52 chr12 57315177 57315274 -86471181 + MER31A LTR ERV1 381 483 -2 651 265 31 0 chr12 57315321 57315483 -86470972 + MER31A-int LTR ERV1 7 173 -4763 5302 186 60 55 chr12 57315624 57316908 -86469547 + MER31A-int LTR ERV1 165 1454 -3482 4126 217 76 49 chr12 57316918 57318441 -86468014 + MER31A-int LTR ERV1 1632 3195 -1741 247 298 58 16 chr12 57318449 57318570 -86467885 - L1M4 LINE L1 -1358 5504 5379 383 286 44 5 chr12 57318829 57319032 -86467423 - L1MC/D LINE L1 -2278 5507 5297 3023 41 0 0 chr12 57319040 57319405 -86467050 + L1PA4 LINE L1 5786 6150 -5 24 32 0 0 chr12 57319883 57319914 -86466541 + AT_rich Low_complexity Low_complexity 1 31 0 1046 192 71 0 chr12 57319918 57320158 -86466297 - L1MA9 LINE L1 -35 6277 6021 383 243 29 7 chr12 57320175 57320311 -86466144 - L1PB3 LINE L1 -1 6153 6015 24 32 0 0 chr12 57320425 57320456 -86465999 + AT_rich Low_complexity Low_complexity 1 31 0 5994 113 0 13 chr12 57320456 57321352 -86465103 - L1PB3 LINE L1 -1 6153 5270 * 8461 213 36 16 chr12 57321340 57323189 -86463266 - L1PBa LINE L1 -2051 4811 2999 2361 92 0 13 chr12 57323189 57323503 -86462952 + AluY SINE Alu 1 310 -1 8461 213 36 16 chr12 57323503 57326655 -86459800 - L1PBa LINE L1 -3863 2999 650 3491 182 42 29 chr12 57326659 57327652 -86458803 - L1MA9 LINE L1 -276 6036 5015 364 269 163 22 chr12 57327675 57328036 -86458419 - L1M4 LINE L1 -1435 4711 4300 30 0 0 0 chr12 57328054 57328084 -86458371 + AT_rich Low_complexity Low_complexity 1 30 0 1206 98 70 98 chr12 57328086 57328373 -86458082 - L1MA8 LINE L1 -5 6286 6008 446 273 135 29 chr12 57328348 57328548 -86457907 - L1M4 LINE L1 -1839 4307 4130 * 2024 178 3 22 chr12 57328548 57328903 -86457552 + MER7A DNA MER2_type 1 346 0 446 273 135 29 chr12 57328903 57329086 -86457369 - L1M4 LINE L1 -2016 4130 3883 1777 203 54 60 chr12 57329119 57329621 -86456834 + MLT1D LTR MaLR 7 505 0 604 307 46 20 chr12 57329624 57330018 -86456437 - L1M4 LINE L1 -2292 3854 3451 241 304 14 0 chr12 57330244 57330313 -86456142 - MLT1-int LTR MaLR -883 488 419 853 267 25 45 chr12 57330549 57330887 -86455568 - MLT1G LTR MaLR 0 555 235 1228 196 70 127 chr12 57330936 57331455 -86455000 - LTR45B LTR ERV1 0 489 1 354 303 60 32 chr12 57331462 57331743 -86454712 - L1MC4 LINE L1 -189 7853 7565 2095 186 45 2 chr12 57331745 57332143 -86454312 + LTR1B LTR ERV1 412 826 0 195 330 45 45 chr12 57332915 57333027 -86453428 - L2 LINE L2 -39 3274 3163 2146 127 3 0 chr12 57333038 57333345 -86453110 + AluSq SINE Alu 1 308 -5 25 0 0 0 chr12 57333731 57333756 -86452699 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr12 57334240 57334276 -86452179 + AT_rich Low_complexity Low_complexity 1 36 0 504 350 112 23 chr12 57334319 57334843 -86451612 + L1MC4a LINE L1 5321 5789 -381 26 30 0 0 chr12 57335146 57335179 -86451276 + AT_rich Low_complexity Low_complexity 1 33 0 246 193 96 133 chr12 57335729 57335864 -86450591 + LTR41 LTR ERVL 513 642 -131 7480 32 11 0 chr12 57335866 57337049 -86449406 - L1PA4 LINE L1 -1 6154 4965 9753 28 4 1 chr12 57337049 57338220 -86448235 + L1P LINE L1 3825 4999 -1147 696 304 61 43 chr12 57339171 57339566 -86446889 + L2 LINE L2 2912 3313 0 301 324 0 0 chr12 57342472 57342580 -86443875 + (CTG)n Simple_repeat Simple_repeat 2 109 0 23 0 0 0 chr12 57342906 57342929 -86443526 + AT_rich Low_complexity Low_complexity 1 23 0 342 0 0 0 chr12 57342935 57342973 -86443482 + (TG)n Simple_repeat Simple_repeat 2 39 0 304 303 130 12 chr12 57343213 57343375 -86443080 - MIR SINE MIR -9 253 73 219 306 141 0 chr12 57344266 57344351 -86442104 - L3 LINE CR1 -975 602 506 2166 252 37 8 chr12 57344396 57344992 -86441463 + MER90 LTR ERV1 1 613 -1 463 303 0 0 chr12 57345084 57345206 -86441249 + MER90-int LTR ERV1 5 126 -4810 286 216 0 40 chr12 57345382 57345456 -86440999 + MER90-int LTR ERV1 195 265 -4671 5291 213 25 52 chr12 57345471 57346838 -86439617 + MER90-int LTR ERV1 203 1532 -3404 665 154 0 0 chr12 57346905 57347009 -86439446 + MER8 DNA MER2_type 136 239 0 727 219 44 32 chr12 57347016 57347267 -86439188 + MER90-int LTR ERV1 1527 1780 -3156 393 334 45 2 chr12 57347289 57347509 -86438946 - L1ME LINE L1 -335 5786 5555 4921 156 18 14 chr12 57347535 57348466 -86437989 - L1MA6 LINE L1 0 6300 5366 2167 211 43 2 chr12 57349040 57349547 -86436908 + L1 LINE L1 4832 5359 -787 864 154 0 0 chr12 57350749 57350892 -86435563 - L1PA15 LINE L1 0 6165 6023 843 98 0 0 chr12 57351463 57351575 -86434880 - THE1B LTR MaLR 0 364 253 1399 188 57 24 chr12 57351741 57351974 -86434481 + THE1B LTR MaLR 1 248 -178 2146 141 0 0 chr12 57351974 57352279 -86434176 - AluSx SINE Alu -5 307 3 1399 188 57 24 chr12 57352279 57352361 -86434094 + THE1B LTR MaLR 248 326 -100 5560 173 13 12 chr12 57352362 57354202 -86432253 - L1PA15 LINE L1 -201 5964 4125 580 224 168 0 chr12 57356376 57356537 -86429918 - MER58A DNA MER1_type 0 224 37 2774 216 26 16 chr12 57356774 57357418 -86429037 + MER82 DNA MER2_type 2 652 -1 278 292 34 0 chr12 57357452 57357541 -86428914 - MIR SINE MIR -108 154 63 24 0 0 0 chr12 57357622 57357646 -86428809 + AT_rich Low_complexity Low_complexity 1 24 0 342 312 47 12 chr12 57357899 57358069 -86428386 - MIR SINE MIR -38 224 49 27 29 0 0 chr12 57358578 57358612 -86427843 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 57358770 57358798 -86427657 + AT_rich Low_complexity Low_complexity 1 28 0 3744 250 45 26 chr12 57358871 57360317 -86426138 + L1M3 LINE L1 2143 3615 -2531 * 4503 220 25 5 chr12 57360308 57361549 -86424906 + L1M3 LINE L1 4181 5444 -724 707 217 3 46 chr12 57361573 57361791 -86424664 + L1M4 LINE L1 1264 1516 -5333 687 205 55 5 chr12 57361809 57362009 -86424446 - L1 LINE L1 -771 5375 5166 * 925 192 10 0 chr12 57362004 57362207 -86424248 + L1M4 LINE L1 1517 1721 -5128 * 2775 240 60 42 chr12 57362198 57363554 -86422901 + L1MD1 LINE L1 3729 5108 -1038 1801 209 28 0 chr12 57363596 57364032 -86422423 + L1MD1 LINE L1 5794 6241 -1 505 236 101 95 chr12 57364838 57364896 -86421559 + L1M4 LINE L1 5744 5800 -1048 1660 160 79 77 chr12 57364896 57365327 -86421128 - MSTB1 LTR MaLR 0 432 1 505 236 101 95 chr12 57365327 57365594 -86420861 + L1M4 LINE L1 5800 6071 -777 25 0 0 0 chr12 57365692 57365717 -86420738 + AT_rich Low_complexity Low_complexity 1 25 0 406 191 0 0 chr12 57365728 57365822 -86420633 - L1 LINE L1 -1436 4710 4617 641 246 70 33 chr12 57367619 57367834 -86418621 - L2 LINE L2 -12 3301 3079 202 314 21 36 chr12 57367888 57368028 -86418427 - L2 LINE L2 -3138 176 39 405 0 0 0 chr12 57368482 57368527 -86417928 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 253 50 0 0 chr12 57368542 57368582 -86417873 - L1PB3 LINE L1 0 6154 6115 41918 43 2 1 chr12 57368592 57374740 -86411715 - L1PA3 LINE L1 -3 6152 1 192 135 0 0 chr12 57374813 57374850 -86411605 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 324 70 0 0 chr12 57375599 57375642 -86410813 + (CA)n Simple_repeat Simple_repeat 2 44 0 2325 207 34 29 chr12 57376034 57376740 -86409715 + Tigger7 DNA MER2_type 1 2579 -8 650 146 188 35 chr12 57378141 57378285 -86408170 + FRAM SINE Alu 1 166 0 1122 221 72 7 chr12 57378328 57378758 -86407697 - L1 LINE L1 -2652 3494 3037 1149 178 62 0 chr12 57378758 57378966 -86407489 - AluJo SINE Alu -5 307 87 21 0 0 0 chr12 57379320 57379341 -86407114 + AT_rich Low_complexity Low_complexity 1 21 0 216 135 0 0 chr12 57379757 57379794 -86406661 + (CA)n Simple_repeat Simple_repeat 1 37 0 6048 126 19 4 chr12 57380334 57381330 -86405125 + L1MC1 LINE L1 5323 6333 0 254 278 10 0 chr12 57381539 57381636 -86404819 - L1ME3A LINE L1 -15 6155 6058 798 239 42 24 chr12 57381638 57381927 -86404528 - L1ME3A LINE L1 -239 5931 5638 3082 162 69 9 chr12 57381958 57382587 -86403868 + MER39 LTR ERV1 1 707 0 983 288 91 43 chr12 57382588 57383770 -86402685 - L1ME3A LINE L1 -523 5647 4409 1838 75 4 4 chr12 57384264 57384517 -86401938 + L1PA8 LINE L1 5916 6168 -4 594 284 131 18 chr12 57384518 57384777 -86401678 + L1M4 LINE L1 4485 4802 -1344 1865 146 10 26 chr12 57384777 57385086 -86401369 + AluSx SINE Alu 1 304 -8 594 284 131 18 chr12 57385086 57385207 -86401248 + L1M4 LINE L1 4802 4908 -1238 317 221 39 0 chr12 57385303 57385380 -86401075 + L1M LINE L1 5295 5374 -804 279 104 21 0 chr12 57385431 57385479 -86400976 - L1ME3A LINE L1 -225 5945 5897 949 87 7 34 chr12 57385479 57385526 -86400929 + L1MA4A LINE L1 6148 6195 -108 2114 125 103 52 chr12 57385526 57385933 -86400522 - MSTA LTR MaLR 0 428 1 949 87 7 34 chr12 57385933 57386034 -86400421 + L1MA4A LINE L1 6195 6292 -11 41279 45 6 0 chr12 57386123 57392234 -86394221 + L1PA4 LINE L1 7 6152 -3 246 305 63 55 chr12 57392355 57392497 -86393958 + HAL1b LINE L1 172 311 -1037 1733 98 0 65 chr12 57392497 57392802 -86393653 + AluY SINE Alu 36 311 0 246 305 63 55 chr12 57392802 57393026 -86393429 + HAL1b LINE L1 311 541 -807 2035 141 20 0 chr12 57393246 57393550 -86392905 + AluSx SINE Alu 1 310 -2 404 324 54 29 chr12 57393809 57394013 -86392442 - MIR SINE MIR 0 262 54 1999 74 0 0 chr12 57394231 57394496 -86391959 + AluY SINE Alu 40 304 0 3729 193 20 39 chr12 57395283 57395359 -86391096 + L1 LINE L1 3379 3455 -2691 2249 129 3 0 chr12 57395359 57395670 -86390785 + AluSx SINE Alu 1 312 0 3729 193 20 39 chr12 57395670 57396553 -86389902 + L1 LINE L1 3455 4320 -1826 4535 141 27 11 chr12 57396699 57396922 -86389533 + Tigger1 DNA MER2_type 1568 1786 -632 2235 118 0 0 chr12 57396922 57397227 -86389228 + AluSq SINE Alu 1 305 -8 4535 141 27 11 chr12 57397227 57397827 -86388628 + Tigger1 DNA MER2_type 1786 2404 -14 2066 87 31 6 chr12 57399456 57399846 -86386609 - LTR7 LTR ERV1 0 450 1 3466 95 27 9 chr12 57399846 57400393 -86386062 - HERVH LTR ERV1 0 7713 7157 2357 131 19 5 chr12 57400386 57400807 -86385648 - HERVH LTR ERV1 -1697 6016 5590 * 7580 117 3 1 chr12 57400798 57401952 -86384503 - HERVH LTR ERV1 -2564 5149 3994 2027 149 35 3 chr12 57401973 57402341 -86384114 - HERVH LTR ERV1 -3977 3736 3357 12313 130 7 23 chr12 57402343 57404893 -86381562 - HERVH LTR ERV1 -4885 2828 1 2046 91 31 6 chr12 57404893 57405283 -86381172 - LTR7 LTR ERV1 0 450 1 2215 143 49 12 chr12 57405283 57405689 -86380766 + MSTA LTR MaLR 8 428 0 1117 139 85 83 chr12 57405733 57406105 -86380350 + MER67C LTR ERV1 5 401 -252 221 314 73 57 chr12 57407033 57407157 -86379298 - MIR3 SINE MIR -80 128 3 1978 137 156 8 chr12 57407988 57408361 -86378094 + MSTA LTR MaLR 1 428 0 238 344 56 31 chr12 57408521 57408681 -86377774 + L2 LINE L2 1860 2023 -1291 1049 223 199 6 chr12 57408906 57409252 -86377203 + MSTC LTR MaLR 3 415 -13 807 191 78 19 chr12 57409472 57409728 -86376727 + LTR37B LTR ERV1 198 468 0 528 347 55 55 chr12 57409730 57410329 -86376126 + L2 LINE L2 2367 2965 -349 2508 52 0 10 chr12 57410424 57410734 -86375721 - AluY SINE Alu -4 307 1 345 245 118 0 chr12 57411126 57411228 -86375227 + MIR SINE MIR 30 143 -65 2648 183 17 0 chr12 57411635 57412153 -86374302 - L1MB1 LINE L1 -298 5870 5344 305 108 12 72 chr12 57412154 57412237 -86374218 + L1M LINE L1 5255 5332 -1002 2313 184 27 4 chr12 57412244 57412721 -86373734 + MER67C LTR ERV1 223 710 0 350 231 131 8 chr12 57412871 57413001 -86373454 + MIR SINE MIR 114 259 -3 1850 197 28 13 chr12 57413586 57413976 -86372479 - MSTD LTR MaLR 0 396 1 458 346 37 12 chr12 57414009 57414171 -86372284 - MER91A DNA MER1_type -26 170 5 522 199 51 45 chr12 57414695 57414871 -86371584 - MER104 DNA MER2_type -3 177 1 7325 174 35 4 chr12 57415256 57416736 -86369719 - L1MCa LINE L1 -4873 1553 28 515 210 185 38 chr12 57417512 57417669 -86368786 - MER5A DNA MER1_type 0 189 10 910 233 5 5 chr12 57417700 57417889 -86368566 + MER5A DNA MER1_type 1 189 0 305 243 115 74 chr12 57417911 57418059 -86368396 + MER5B DNA MER1_type 23 176 -2 1352 304 36 16 chr12 57418533 57419033 -86367422 + MER115 DNA AcHobo 104 613 -80 275 304 51 43 chr12 57420397 57420535 -86365920 + L3b LINE CR1 1197 1335 -248 199 283 109 33 chr12 57420942 57421034 -86365421 + MIR SINE MIR 39 137 -71 219 286 0 0 chr12 57421685 57421741 -86364714 + MIR3 SINE MIR 105 160 -48 322 256 39 85 chr12 57421741 57421870 -86364585 + MER5B DNA MER1_type 1 123 -55 229 314 66 58 chr12 57421857 57421978 -86364477 - MIR SINE MIR -138 124 3 * 3482 67 11 0 chr12 57422093 57422553 -86363902 - L1PA10 LINE L1 0 6168 5704 327 169 0 0 chr12 57425916 57425987 -86360468 + (TA)n Simple_repeat Simple_repeat 2 72 0 1133 267 110 2 chr12 57426386 57426824 -86359631 + L1ME3A LINE L1 5627 6111 -59 201 212 30 30 chr12 57426824 57426860 -86359595 + (TTTA)n Simple_repeat Simple_repeat 2 40 -27 1453 161 35 53 chr12 57426860 57427145 -86359310 - AluJo SINE Alu -32 280 1 201 212 30 30 chr12 57427145 57427174 -86359281 + (TTTA)n Simple_repeat Simple_repeat 39 67 0 40 37 0 0 chr12 57428605 57428659 -86357796 + AT_rich Low_complexity Low_complexity 1 54 0 265 303 21 49 chr12 57428880 57429022 -86357433 - MIR SINE MIR -50 212 75 369 258 58 26 chr12 57430834 57430996 -86355459 - MIR SINE MIR -70 192 20 8310 139 26 24 chr12 57431212 57432693 -86353762 - Tigger1 DNA MER2_type -935 1483 1 437 302 18 47 chr12 57432723 57432925 -86353530 + MER57A LTR ERV1 127 320 -83 1790 224 44 74 chr12 57432925 57433496 -86352959 - MLT2B3 LTR ERVL 0 554 1 437 302 18 47 chr12 57433496 57433568 -86352887 + MER57A LTR ERV1 320 393 -10 276 206 31 93 chr12 57433695 57433792 -86352663 + MIR SINE MIR 122 212 -50 413 260 16 41 chr12 57434025 57434148 -86352307 + MIR3 SINE MIR 15 134 -74 571 229 85 49 chr12 57434178 57434401 -86352054 + L2 LINE L2 3082 3312 -1 1588 179 38 72 chr12 57434943 57435389 -86351066 + MSTB1 LTR MaLR 1 431 -1 191 385 0 19 chr12 57435415 57435519 -86350936 + L3b LINE CR1 1200 1301 -282 2366 85 0 3 chr12 57435749 57436042 -86350413 + AluSq SINE Alu 1 292 -21 610 182 34 55 chr12 57436210 57436483 -86349972 + MER4C LTR ERV1 1 325 -339 * 1040 195 6 121 chr12 57436469 57436808 -86349647 + MER4C LTR ERV1 149 448 -17 1142 182 101 13 chr12 57436818 57437165 -86349290 + MER4C-int LTR ERV1 1 456 -6142 3339 148 36 15 chr12 57437170 57437760 -86348695 + MER41B LTR ERV1 1 602 -33 443 141 0 0 chr12 57437771 57437842 -86348613 + MER4C-int LTR ERV1 504 574 -6024 643 146 16 16 chr12 57437844 57437967 -86348488 + HERVH LTR ERV1 1998 2120 -2760 1421 135 42 13 chr12 57437967 57438204 -86348251 + MER61A LTR ERV1 1 244 -99 313 216 0 27 chr12 57438217 57438291 -86348164 + HERVH LTR ERV1 7642 7713 0 694 91 0 18 chr12 57438291 57438401 -86348054 + LTR7 LTR ERV1 1 108 -342 8259 179 3 8 chr12 57438401 57440003 -86346452 + HERVH LTR ERV1 6103 7696 -17 347 78 141 16 chr12 57440003 57440067 -86346388 + LTR7 LTR ERV1 64 135 -315 2002 182 55 53 chr12 57440240 57440729 -86345726 - LTR2B LTR ERV1 0 490 1 615 128 0 28 chr12 57440729 57440838 -86345617 - Harlequin LTR ERV1 0 6896 6791 * 1718 114 40 3 chr12 57440835 57441147 -86345308 + MER4-int LTR ERV1 2170 4824 -393 756 264 22 6 chr12 57441138 57441320 -86345135 + MER4-int LTR ERV1 2121 2305 -3641 * 1213 158 96 78 chr12 57441431 57441936 -86344519 + MER4-int LTR ERV1 1820 3052 -2894 753 162 81 0 chr12 57441938 57442086 -86344369 - LTR48B LTR ERV1 -94 550 391 * 1094 226 206 17 chr12 57442084 57442491 -86343964 - LTR48 LTR ERV1 -301 486 3 2488 103 31 14 chr12 57443174 57443532 -86342923 - THE1B LTR MaLR 0 364 1 11306 111 8 1 chr12 57443532 57445100 -86341355 - THE1B-int LTR MaLR 0 1580 2 2109 163 14 25 chr12 57445101 57445469 -86340986 - THE1B LTR MaLR 0 364 1 4158 95 5 10 chr12 57445513 57446114 -86340341 + MER4A LTR ERV1 3 600 0 1032 174 102 8 chr12 57446429 57446665 -86339790 - MER2 DNA MER2_type 0 345 88 871 230 6 0 chr12 57446693 57446871 -86339584 - MER8 DNA MER2_type -60 179 1 23 68 0 0 chr12 57446871 57446915 -86339540 + AT_rich Low_complexity Low_complexity 1 44 0 315 104 0 0 chr12 57447054 57447102 -86339353 + (TG)n Simple_repeat Simple_repeat 2 49 0 2748 121 14 5 chr12 57447156 57447576 -86338879 + MER57B LTR ERV1 4 427 -7 216 211 19 0 chr12 57447583 57447635 -86338820 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 22 35 0 0 chr12 57447658 57447687 -86338768 + AT_rich Low_complexity Low_complexity 1 29 0 2871 6 0 0 chr12 57448736 57449048 -86337407 + AluYb8 SINE Alu 1 312 -6 21 100 0 0 chr12 57449211 57449281 -86337174 + AT_rich Low_complexity Low_complexity 1 70 0 306 229 0 0 chr12 57450339 57450435 -86336020 + G-rich Low_complexity Low_complexity 1 96 0 360 0 0 0 chr12 57452063 57452103 -86334352 + (TAAAA)n Simple_repeat Simple_repeat 4 43 0 203 250 0 0 chr12 57452858 57452914 -86333541 + GA-rich Low_complexity Low_complexity 3 58 0 201 306 57 48 chr12 57452916 57453040 -86333415 + MIR3 SINE MIR 3 127 -81 635 265 37 51 chr12 57453439 57453654 -86332801 + L2 LINE L2 3102 3313 0 263 384 47 26 chr12 57454620 57454810 -86331645 + MIR3 SINE MIR 10 203 -5 253 257 149 14 chr12 57456378 57456452 -86330003 - MIR SINE MIR -145 117 34 387 113 28 0 chr12 57457498 57457569 -86328886 + L1MA8 LINE L1 3379 3451 -2695 585 157 0 0 chr12 57457574 57457663 -86328792 + AluS SINE Alu 1 89 -223 883 159 0 18 chr12 57457781 57457951 -86328504 + L1MA4 LINE L1 5855 6021 -279 278 100 29 100 chr12 57457957 57458027 -86328428 + L1MB3 LINE L1 6091 6155 -28 21 0 0 0 chr12 57458522 57458543 -86327912 + AT_rich Low_complexity Low_complexity 1 21 0 1364 116 108 46 chr12 57458613 57458854 -86327601 - THE1B LTR MaLR -108 256 1 2653 48 0 6 chr12 57459241 57459553 -86326902 - AluY SINE Alu -1 310 1 3464 167 1 37 chr12 57460008 57460662 -86325793 + L1MA8 LINE L1 3704 4334 -1812 779 240 193 62 chr12 57460698 57460857 -86325598 - HAL1 LINE L1 -5 2502 2365 249 33 0 0 chr12 57460857 57460887 -86325568 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 779 240 193 62 chr12 57460887 57461277 -86325178 - HAL1 LINE L1 -142 2365 1881 2511 74 0 0 chr12 57461435 57461744 -86324711 - AluSq SINE Alu -4 309 1 5963 157 29 33 chr12 57462978 57464957 -86321498 + L1MA8 LINE L1 4318 6291 0 373 104 194 0 chr12 57465536 57465603 -86320852 + MADE1 DNA Mariner 1 80 0 27 29 0 0 chr12 57465960 57465994 -86320461 + GC_rich Low_complexity Low_complexity 1 34 0 188 372 9 26 chr12 57466304 57466417 -86320038 + MIR SINE MIR 20 130 -132 807 153 73 0 chr12 57466417 57466541 -86319914 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr12 57466729 57466752 -86319703 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1443 68 0 6 chr12 57466864 57467041 -86319414 + L1PA5 LINE L1 5979 6154 0 304 276 31 35 chr12 57467068 57467259 -86319196 - MIR3 SINE MIR -31 177 21 255 342 54 0 chr12 57471654 57471803 -86314652 + MER20B DNA MER1_type 33 189 -594 402 324 178 5 chr12 57471823 57472042 -86314413 + MIR SINE MIR 6 262 0 6018 77 0 0 chr12 57472063 57472805 -86313650 - L1PA13 LINE L1 -3 6160 5419 25 90 0 0 chr12 57472900 57472967 -86313488 + AT_rich Low_complexity Low_complexity 1 67 0 567 103 19 19 chr12 57473145 57473252 -86313203 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 196 0 27 81 chr12 57474219 57474256 -86312199 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 228 198 0 77 chr12 57474815 57474906 -86311549 + G-rich Low_complexity Low_complexity 5 88 0 222 293 27 0 chr12 57475736 57475811 -86310644 + GA-rich Low_complexity Low_complexity 2 78 0 299 333 11 0 chr12 57476153 57476246 -86310209 + MIR3 SINE MIR 109 202 -6 6287 115 50 112 chr12 57476433 57477745 -86308710 - Tigger3b DNA MER2_type 0 1231 1 1684 148 39 20 chr12 57477964 57478269 -86308186 - AluJo SINE Alu -1 311 1 1491 233 225 25 chr12 57478570 57478896 -86307559 - L1MC4 LINE L1 -49 7993 7734 1217 159 75 5 chr12 57478896 57479110 -86307345 - L1PA15 LINE L1 0 6165 5937 1491 233 225 25 chr12 57479110 57479427 -86307028 - L1MC4 LINE L1 -308 7734 7221 2375 101 0 19 chr12 57479572 57479890 -86306565 - AluSx SINE Alu 0 312 1 223 321 263 7 chr12 57479962 57480099 -86306356 - MER91A DNA MER1_type -11 185 14 347 319 28 7 chr12 57480160 57480301 -86306154 - MIR SINE MIR -10 252 109 492 287 72 6 chr12 57481413 57481594 -86304861 + MIR SINE MIR 44 236 -26 337 345 0 0 chr12 57481767 57481877 -86304578 + MIR SINE MIR 41 150 -58 646 299 17 26 chr12 57481894 57482125 -86304330 + MIR SINE MIR 14 242 -20 259 143 0 0 chr12 57483290 57483339 -86303116 - MER57A LTR ERV1 0 403 355 771 203 0 0 chr12 57483352 57483480 -86302975 - FLAM_C SINE Alu -9 134 7 2039 198 18 18 chr12 57483489 57483884 -86302571 - MER57B LTR ERV1 -37 397 3 219 361 168 41 chr12 57483914 57484230 -86302225 - L2 LINE L2 0 3272 2917 228 313 118 82 chr12 57484641 57484817 -86301638 - L2 LINE L2 0 3272 3104 1496 198 101 54 chr12 57484817 57485075 -86301380 - MLT1C LTR MaLR 0 467 178 2283 102 0 0 chr12 57485075 57485369 -86301086 - AluSg SINE Alu -16 294 1 1496 198 101 54 chr12 57485369 57485554 -86300901 - MLT1C LTR MaLR -289 178 3 228 313 118 82 chr12 57485554 57485706 -86300749 - L2 LINE L2 -168 3104 2932 301 280 112 0 chr12 57486068 57486175 -86300280 + L2 LINE L2 3195 3313 0 272 316 34 44 chr12 57486979 57487110 -86299345 + MIR SINE MIR 20 150 -112 2195 98 14 0 chr12 57487110 57487397 -86299058 + AluY SINE Alu 1 291 -20 272 316 34 44 chr12 57487397 57487471 -86298984 + MIR SINE MIR 150 223 -39 2537 48 0 32 chr12 57487692 57488008 -86298447 + AluY SINE Alu 1 306 -5 242 319 14 0 chr12 57488743 57488812 -86297643 + L2 LINE L2 3197 3266 -6 27 49 0 0 chr12 57489127 57489168 -86297287 + AT_rich Low_complexity Low_complexity 1 41 0 2127 276 79 26 chr12 57489226 57490013 -86296442 - L2 LINE L2 -290 3023 2195 5784 97 19 2 chr12 57490362 57491158 -86295297 - L1PA10 LINE L1 0 6168 5360 691 267 58 16 chr12 57491158 57491416 -86295039 - MER110A LTR ERV1 -7 461 193 1179 183 25 30 chr12 57491469 57491575 -86294880 + AluJb SINE Alu 1 106 -206 2345 127 39 30 chr12 57491575 57491936 -86294519 + THE1B LTR MaLR 1 364 0 1179 183 25 30 chr12 57491936 57492064 -86294391 + AluJb SINE Alu 106 234 -78 289 176 50 11 chr12 57492091 57492181 -86294274 - MER110A LTR ERV1 -339 129 4 28 48 0 0 chr12 57492215 57492257 -86294198 + AT_rich Low_complexity Low_complexity 1 42 0 248 307 143 86 chr12 57493061 57493305 -86293150 + L2 LINE L2 3008 3265 -7 255 266 22 79 chr12 57494691 57494830 -86291625 + MER94 DNA DNA 3 133 -1 546 57 0 0 chr12 57494870 57494940 -86291515 + (TC)n Simple_repeat Simple_repeat 1 70 0 216 0 0 0 chr12 57494940 57494964 -86291491 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr12 57495112 57495133 -86291322 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 57495167 57495190 -86291265 + AT_rich Low_complexity Low_complexity 1 23 0 216 244 0 0 chr12 57495229 57495274 -86291181 + MIR SINE MIR 72 116 -146 * 367 158 171 0 chr12 57495269 57495345 -86291110 + L2 LINE L2 3225 3313 0 299 237 32 43 chr12 57495348 57495441 -86291014 + MIR SINE MIR 114 205 -57 496 291 51 73 chr12 57496485 57496619 -86289836 + MIR SINE MIR 34 169 -93 2273 121 51 28 chr12 57496619 57496975 -86289480 + THE1B LTR MaLR 1 364 0 11691 109 23 1 chr12 57496975 57498520 -86287935 + THE1B-int LTR MaLR 1 1580 0 2082 141 88 18 chr12 57498520 57498860 -86287595 + THE1B LTR MaLR 1 364 0 496 291 51 73 chr12 57498860 57498957 -86287498 + MIR SINE MIR 166 262 0 269 274 103 55 chr12 57500020 57500166 -86286289 + L2 LINE L2 3161 3313 0 697 295 42 29 chr12 57500309 57500550 -86285905 - MIR SINE MIR 0 262 19 373 290 77 13 chr12 57500948 57501103 -86285352 - MIR3 SINE MIR -10 198 34 191 349 61 8 chr12 57501299 57501431 -86285024 + L2 LINE L2 3111 3249 -23 317 143 0 0 chr12 57503126 57503175 -86283280 + U5 snRNA snRNA 1 49 -67 350 176 44 15 chr12 57503259 57503327 -86283128 - MIR SINE MIR -63 145 76 31 26 0 0 chr12 57504826 57504864 -86281591 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 57506010 57506031 -86280424 + AT_rich Low_complexity Low_complexity 1 21 0 932 270 5 9 chr12 57507347 57507562 -86278893 - MIR SINE MIR -39 223 10 24 0 0 0 chr12 57507787 57507811 -86278644 + AT_rich Low_complexity Low_complexity 1 24 0 203 356 41 34 chr12 57507837 57507983 -86278472 - MIR SINE MIR -111 151 5 189 107 0 0 chr12 57508393 57508421 -86278034 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 207 250 0 0 chr12 57508467 57508511 -86277944 + GA-rich Low_complexity Low_complexity 3 46 0 242 325 0 18 chr12 57508711 57508825 -86277630 + MIR SINE MIR 100 211 -51 192 77 0 0 chr12 57510949 57510975 -86275480 + (GAA)n Simple_repeat Simple_repeat 1 26 0 320 262 11 160 chr12 57512027 57512214 -86274241 + MIR3 SINE MIR 41 199 -9 26 30 0 0 chr12 57513824 57513857 -86272598 + AT_rich Low_complexity Low_complexity 1 33 0 212 211 19 0 chr12 57514808 57514860 -86271595 + (TAA)n Simple_repeat Simple_repeat 2 54 0 232 263 167 17 chr12 57515069 57515309 -86271146 - L1MC4a LINE L1 -1866 5942 5667 454 301 8 0 chr12 57515392 57515515 -86270940 - MIR SINE MIR -19 243 120 274 390 49 0 chr12 57516055 57516178 -86270277 + MIR SINE MIR 1 129 -133 478 138 11 0 chr12 57516254 57516341 -86270114 - L1MA5 LINE L1 -1 6299 6212 307 300 10 10 chr12 57516345 57516445 -86270010 + MIR SINE MIR 137 236 -26 508 276 83 28 chr12 57516526 57516787 -86269668 + MIR SINE MIR 6 262 0 214 380 11 11 chr12 57517539 57517631 -86268824 + MIR3 SINE MIR 114 205 -3 213 197 0 0 chr12 57518232 57518293 -86268162 + (TA)n Simple_repeat Simple_repeat 1 61 0 361 284 86 45 chr12 57519342 57519564 -86266891 + L2 LINE L2 2554 2784 -530 279 280 80 20 chr12 57519983 57520083 -86266372 + L2 LINE L2 3177 3282 -31 2430 81 7 0 chr12 57520350 57520658 -86265797 + AluSp SINE Alu 1 310 -3 229 292 169 39 chr12 57521452 57521606 -86264849 + MIR SINE MIR 86 259 -3 385 325 204 5 chr12 57522299 57522505 -86263950 - MIR SINE MIR 0 262 16 536 169 19 2 chr12 57522523 57522685 -86263770 + MER3 DNA MER1_type 6 209 0 278 349 14 7 chr12 57522772 57522918 -86263537 - MER117 DNA MER1_type 0 197 51 299 254 0 145 chr12 57523563 57523701 -86262754 + L2 LINE L2 2967 3084 -188 234 294 59 0 chr12 57523845 57523913 -86262542 + L2 LINE L2 3237 3308 -5 411 274 89 0 chr12 57524927 57525051 -86261404 - MIR SINE MIR -74 188 54 22 0 0 0 chr12 57525097 57525119 -86261336 + AT_rich Low_complexity Low_complexity 1 22 0 181 264 0 19 chr12 57525162 57525215 -86261240 + L3b LINE CR1 1344 1395 -188 213 39 0 0 chr12 57527207 57527233 -86259222 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 230 323 43 0 chr12 57527292 57527385 -86259070 + MLT1F1 LTR MaLR 35 131 -436 1571 192 15 12 chr12 57527390 57527728 -86258727 + L1MC3 LINE L1 7201 7539 -246 2080 170 103 7 chr12 57527744 57528192 -86258263 + L1MB5 LINE L1 5652 6142 -32 1117 177 36 4 chr12 57528201 57528449 -86258006 + L1MC3 LINE L1 7530 7785 0 274 326 11 0 chr12 57528543 57528632 -86257823 + L3b LINE CR1 1276 1365 -218 296 254 14 14 chr12 57528950 57529021 -86257434 + L2 LINE L2 3243 3313 0 1703 233 3 3 chr12 57529426 57529791 -86256664 - MLT1A1 LTR MaLR 0 365 1 1232 128 0 10 chr12 57530163 57530358 -86256097 - L1PB1 LINE L1 -2 6149 5957 351 268 104 30 chr12 57531040 57531204 -86255251 + MIR SINE MIR 67 242 -20 2120 113 3 20 chr12 57531519 57531821 -86254634 + AluSc SINE Alu 1 297 -12 1857 33 0 0 chr12 57531905 57532148 -86254307 - L1P LINE L1 -2924 3222 2980 2535 71 0 0 chr12 57532165 57532475 -86253980 + AluY SINE Alu 1 310 -1 188 221 182 26 chr12 57534108 57534185 -86252270 - L3 LINE CR1 -829 748 660 2169 101 0 16 chr12 57534321 57534627 -86251828 - AluSg SINE Alu 0 310 10 595 134 0 0 chr12 57534627 57534709 -86251746 - AluS SINE Alu -230 82 1 285 109 0 0 chr12 57535561 57535607 -86250848 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 202 340 113 0 chr12 57535663 57535769 -86250686 - L3 LINE CR1 -972 605 488 1301 191 17 51 chr12 57536212 57536563 -86249892 - MLT1A1 LTR MaLR -3 362 24 1533 171 52 21 chr12 57536913 57537240 -86249215 - MER1B DNA MER1_type 0 337 1 279 0 0 0 chr12 57537979 57538010 -86248445 + (TG)n Simple_repeat Simple_repeat 1 31 0 186 118 0 0 chr12 57538768 57538802 -86247653 + (A)n Simple_repeat Simple_repeat 1 34 0 618 247 58 17 chr12 57539080 57539254 -86247201 + MIR SINE MIR 25 205 -57 221 348 11 43 chr12 57539347 57539439 -86247016 - MIR SINE MIR -61 147 68 946 76 14 14 chr12 57539665 57539810 -86246645 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2309 54 0 4 chr12 57539810 57540088 -86246367 - AluY SINE Alu -34 277 1 217 259 86 0 chr12 57540295 57540353 -86246102 - MIR SINE MIR -119 89 27 2343 73 0 7 chr12 57541477 57541778 -86244677 + AluY SINE Alu 1 299 -12 330 313 0 82 chr12 57542261 57542408 -86244047 + L2 LINE L2 3106 3240 -32 289 297 0 0 chr12 57542572 57542636 -86243819 + L2 LINE L2 3249 3312 -1 1557 182 19 67 chr12 57542736 57543166 -86243289 - MER67C LTR ERV1 -11 503 174 3486 85 22 0 chr12 57543166 57543658 -86242797 - L1PA13 LINE L1 0 6163 5661 1557 182 19 67 chr12 57543658 57543825 -86242630 - MER67C LTR ERV1 -340 174 1 266 354 97 0 chr12 57544213 57544326 -86242129 - MIR3 SINE MIR -48 160 37 206 263 0 0 chr12 57545383 57545421 -86241034 - MER5A DNA MER1_type 0 189 152 327 25 0 0 chr12 57545529 57545569 -86240886 + (TG)n Simple_repeat Simple_repeat 1 40 0 195 100 0 0 chr12 57546052 57546082 -86240373 + (TAA)n Simple_repeat Simple_repeat 2 31 0 303 304 118 53 chr12 57546146 57546485 -86239970 - MLT1J LTR MaLR -38 473 113 1321 271 46 42 chr12 57547611 57548069 -86238386 - LTR16B LTR ERVL -4 460 1 330 300 17 8 chr12 57548081 57548201 -86238254 + MIR3 SINE MIR 81 201 -7 507 258 24 0 chr12 57549694 57549818 -86236637 + MIR SINE MIR 58 184 -78 26 64 0 0 chr12 57549858 57549905 -86236550 + AT_rich Low_complexity Low_complexity 1 47 0 520 62 0 0 chr12 57549971 57550036 -86236419 + Alu SINE Alu 230 294 -17 239 235 52 106 chr12 57551695 57551865 -86234590 + MIR3 SINE MIR 19 155 -53 261 0 0 0 chr12 57552442 57552471 -86233984 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 57553830 57553854 -86232601 + AT_rich Low_complexity Low_complexity 1 24 0 351 182 0 0 chr12 57554648 57554725 -86231730 + (TA)n Simple_repeat Simple_repeat 2 78 0 2156 119 3 7 chr12 57556042 57556344 -86230111 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 57556555 57556580 -86229875 + AT_rich Low_complexity Low_complexity 1 25 0 196 326 148 15 chr12 57556666 57556801 -86229654 - MIR SINE MIR -75 187 35 484 278 115 43 chr12 57557301 57557535 -86228920 - MIR SINE MIR -10 252 2 948 177 45 15 chr12 57557577 57557775 -86228680 - MER3 DNA MER1_type 0 209 6 351 346 11 45 chr12 57557802 57557981 -86228474 + MIR SINE MIR 4 176 -86 1133 201 42 90 chr12 57558292 57558671 -86227784 - MLT1A1 LTR MaLR -4 361 1 379 163 184 51 chr12 57558821 57558919 -86227536 - MER81 DNA DNA 0 114 4 1896 204 130 78 chr12 57559184 57560034 -86226421 - LTR28 LTR ERV1 0 1020 1 325 324 46 9 chr12 57560170 57560278 -86226177 + MIR SINE MIR 20 131 -77 656 216 80 65 chr12 57560568 57560920 -86225535 - L1M4 LINE L1 -1634 4512 4156 463 300 22 88 chr12 57560949 57561019 -86225436 - MIR SINE MIR -2 260 187 2081 116 0 3 chr12 57561019 57561342 -86225113 - AluSx SINE Alu 0 322 1 463 300 22 88 chr12 57561342 57561497 -86224958 - MIR SINE MIR -75 187 49 5296 107 1 0 chr12 57562690 57563435 -86223020 - L1PA10 LINE L1 -4 6164 5419 25 90 0 0 chr12 57563530 57563597 -86222858 + AT_rich Low_complexity Low_complexity 1 67 0 549 65 22 22 chr12 57563790 57563882 -86222573 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 196 0 27 81 chr12 57564847 57564884 -86221571 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1805 187 16 22 chr12 57565986 57566350 -86220105 - MLT1A1 LTR MaLR -3 362 1 418 111 0 0 chr12 57567124 57567187 -86219268 - AluS SINE Alu -255 63 1 501 301 20 46 chr12 57567189 57567342 -86219113 - MIR SINE MIR -65 197 49 6184 94 16 0 chr12 57568534 57569850 -86216605 - L1PA10 LINE L1 -4 6164 4835 1144 160 5 0 chr12 57569850 57570063 -86216392 - L1PA10 LINE L1 -3051 3095 2882 9155 193 13 9 chr12 57571205 57573731 -86212724 + L1P3 LINE L1 3282 5820 -352 387 0 0 0 chr12 57574038 57574081 -86212374 + (TG)n Simple_repeat Simple_repeat 2 44 0 42338 35 23 4 chr12 57574404 57580443 -86206012 - L1PA3 LINE L1 0 6155 1 270 0 0 0 chr12 57580526 57580556 -86205899 + (TG)n Simple_repeat Simple_repeat 2 31 0 2286 82 7 3 chr12 57581611 57581905 -86204550 + AluSg SINE Alu 1 295 -15 374 260 63 99 chr12 57582409 57582632 -86203823 + L3 LINE CR1 1191 1405 -172 1319 97 96 0 chr12 57583901 57584218 -86202237 + L1PA5 LINE L1 5872 6238 0 2134 102 0 13 chr12 57584359 57584673 -86201782 - AluY SINE Alu -1 310 1 24 0 0 0 chr12 57585369 57585393 -86201062 + AT_rich Low_complexity Low_complexity 1 24 0 300 344 57 29 chr12 57586277 57586626 -86199829 - ERVL LTR ERVL -3405 2359 2001 49 18 0 0 chr12 57587342 57587398 -86199057 + AT_rich Low_complexity Low_complexity 1 56 0 2413 41 0 0 chr12 57588182 57588510 -86197945 + L1PA4 LINE L1 5840 6167 0 5405 69 45 20 chr12 57588675 57589483 -86196972 + MER61-int LTR ERV1 1992 2819 -2398 2067 95 101 21 chr12 57589620 57589957 -86196498 - THE1B LTR MaLR 0 364 1 1873 155 34 81 chr12 57590995 57591564 -86194891 - MLT2A2 LTR ERVL 0 554 1 1742 249 48 40 chr12 57595205 57595334 -86191121 + L1MC4 LINE L1 6459 6585 -1457 2093 134 131 8 chr12 57595334 57595715 -86190740 - MSTA LTR MaLR 0 428 1 1742 249 48 40 chr12 57595715 57596203 -86190252 + L1MC4 LINE L1 6585 7081 -961 1413 260 103 25 chr12 57596219 57596812 -86189643 + L1MC4 LINE L1 7254 7892 -150 42689 34 22 1 chr12 57596830 57602870 -86183585 + L1PA3 LINE L1 1 6171 0 31 58 0 0 chr12 57602963 57603015 -86183440 + AT_rich Low_complexity Low_complexity 1 52 0 25 90 0 0 chr12 57603436 57603503 -86182952 + AT_rich Low_complexity Low_complexity 1 67 0 27 49 0 0 chr12 57603591 57603632 -86182823 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr12 57603749 57603773 -86182682 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2331 80 0 3 chr12 57604223 57604525 -86181930 - AluSc SINE Alu -8 301 1 25 0 0 0 chr12 57606721 57606746 -86179709 + AT_rich Low_complexity Low_complexity 1 25 0 25150 37 1 1 chr12 57606860 57611813 -86174642 + L1P LINE L1 5 4954 -1192 440 116 21 42 chr12 57611920 57612015 -86174440 + L1PA4 LINE L1 6049 6141 -14 307 294 159 10 chr12 57612300 57612501 -86173954 - L1MC4 LINE L1 -213 7829 7599 21 0 0 0 chr12 57612800 57612821 -86173634 + AT_rich Low_complexity Low_complexity 1 21 0 42726 32 22 1 chr12 57612821 57618845 -86167610 - L1HS LINE L1 -1 6154 1 1413 260 103 25 chr12 57618863 57619456 -86166999 - L1MC4 LINE L1 -150 7892 7254 1742 249 48 40 chr12 57619472 57619960 -86166495 - L1MC4 LINE L1 -961 7081 6585 2093 134 131 8 chr12 57619960 57620341 -86166114 + MSTA LTR MaLR 1 428 0 1742 249 48 40 chr12 57620341 57620470 -86165985 - L1MC4 LINE L1 -1457 6585 6459 1873 155 34 81 chr12 57624109 57624678 -86161777 + MLT2A2 LTR ERVL 1 554 0 2067 95 101 21 chr12 57625716 57626053 -86160402 + THE1B LTR MaLR 1 364 0 5405 69 45 20 chr12 57626190 57626998 -86159457 - MER61-int LTR ERV1 -2398 2819 1992 221 56 0 28 chr12 57627163 57627199 -86159256 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4557 23 0 0 chr12 57627199 57627720 -86158735 - L1PA3 LINE L1 -24 6131 5611 441 277 141 78 chr12 57627938 57628299 -86158156 + MLT1H LTR MaLR 20 403 -146 21 36 0 0 chr12 57628365 57628393 -86158062 + AT_rich Low_complexity Low_complexity 1 28 0 2148 115 3 10 chr12 57630901 57631206 -86155249 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr12 57631273 57631294 -86155161 + AT_rich Low_complexity Low_complexity 1 21 0 839 101 78 0 chr12 57633350 57633479 -86152976 + L1PA11 LINE L1 6032 6170 -4 2503 61 0 3 chr12 57633527 57633839 -86152616 - AluY SINE Alu 0 311 1 22 0 0 0 chr12 57634318 57634340 -86152115 + AT_rich Low_complexity Low_complexity 1 22 0 997 197 101 0 chr12 57634830 57635048 -86151407 + L1MC/D LINE L1 5451 5690 -2095 * 2406 133 16 0 chr12 57635046 57635431 -86151024 - L1PB4 LINE L1 -242 5914 5524 2074 90 3 19 chr12 57635431 57635743 -86150712 - L1P3 LINE L1 -4816 1645 1339 6874 63 6 0 chr12 57636144 57637037 -86149418 + L1PA7 LINE L1 5254 6151 -3 192 291 0 13 chr12 57637085 57637164 -86149291 + MIR SINE MIR 172 249 -13 2080 164 36 42 chr12 57637228 57637783 -86148672 - MLT2A2 LTR ERVL 0 554 1 1872 145 49 25 chr12 57638584 57638950 -86147505 - THE1C LTR MaLR 0 375 1 273 57 0 0 chr12 57638960 57638995 -86147460 + (TG)n Simple_repeat Simple_repeat 2 36 0 867 183 30 52 chr12 57638997 57639227 -86147228 - L1 LINE L1 -2128 4018 3794 211 106 21 43 chr12 57639823 57639870 -86146585 + (TA)n Simple_repeat Simple_repeat 2 47 0 3256 133 138 51 chr12 57641098 57641611 -86144844 + LTR12 LTR ERV1 1 530 -184 3229 63 5 5 chr12 57641611 57642037 -86144418 - L1PA5 LINE L1 -2 6152 5727 3256 133 138 51 chr12 57642037 57642240 -86144215 + LTR12 LTR ERV1 530 714 0 24 77 0 0 chr12 57643615 57643667 -86142788 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr12 57643817 57643847 -86142608 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 57643929 57643959 -86142496 + AT_rich Low_complexity Low_complexity 1 30 0 566 301 75 29 chr12 57644355 57644594 -86141861 - MIR SINE MIR 0 262 13 952 249 46 0 chr12 57644980 57645221 -86141234 + MIR SINE MIR 11 262 0 1454 79 25 0 chr12 57645473 57645676 -86140779 + L1PA13 LINE L1 5948 6155 -8 24 32 0 0 chr12 57646260 57646291 -86140164 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr12 57647740 57647775 -86138680 + AT_rich Low_complexity Low_complexity 1 35 0 1162 281 43 17 chr12 57648606 57648821 -86137634 + L1M4 LINE L1 3949 4157 -1989 1886 183 10 47 chr12 57648821 57649226 -86137229 + MLT1B LTR MaLR 1 390 0 1162 281 43 17 chr12 57649226 57649426 -86137029 + L1M4 LINE L1 4157 4375 -1771 816 326 55 20 chr12 57649437 57649839 -86136616 + L1M3c LINE L1 175 590 -5723 2527 242 70 49 chr12 57650214 57651334 -86135121 + L1M3c LINE L1 911 2212 -4171 289 283 66 33 chr12 57651384 57651596 -86134859 + L1M4c LINE L1 1964 2182 -4202 16531 215 18 18 chr12 57652467 57653437 -86133018 + L1P4 LINE L1 1534 2503 -4313 6263 92 11 34 chr12 57653437 57654621 -86131834 - L1PA13 LINE L1 -8 6155 4976 16531 215 18 18 chr12 57654621 57655091 -86131364 + L1P4 LINE L1 2503 2972 -3844 213 39 0 0 chr12 57655091 57655117 -86131338 + (CAA)n Simple_repeat Simple_repeat 2 27 0 16531 215 18 18 chr12 57655117 57658403 -86128052 + L1P4 LINE L1 2972 6280 -536 233 132 0 0 chr12 57658905 57658943 -86127512 + L1P LINE L1 3895 3932 -2214 488 273 12 6 chr12 57659677 57659842 -86126613 - L1M4 LINE L1 -2214 3932 3767 1835 162 30 0 chr12 57661148 57661498 -86124957 - AluSx SINE Alu 0 359 1 32 98 0 0 chr12 57661631 57661733 -86124722 + AT_rich Low_complexity Low_complexity 1 102 0 330 191 71 36 chr12 57661755 57661839 -86124616 - MLT2B1 LTR ERVL 0 520 434 1620 218 69 77 chr12 57662157 57662809 -86123646 - L1MC4 LINE L1 -285 7757 7111 1680 236 65 50 chr12 57662865 57663080 -86123375 - L1M4 LINE L1 -2029 4117 3907 2287 96 0 10 chr12 57663080 57663393 -86123062 - AluSq SINE Alu 0 313 4 1680 236 65 50 chr12 57663393 57663813 -86122642 - L1M4 LINE L1 -2239 3907 3473 187 203 31 0 chr12 57663921 57663985 -86122470 + (TA)n Simple_repeat Simple_repeat 2 67 0 201 260 0 0 chr12 57664023 57664100 -86122355 + GA-rich Low_complexity Low_complexity 2 78 0 328 191 16 0 chr12 57664118 57664181 -86122274 - L1MEc LINE L1 -6298 98 35 240 111 0 0 chr12 57664275 57664320 -86122135 + (TTA)n Simple_repeat Simple_repeat 1 45 0 934 134 0 0 chr12 57664374 57664508 -86121947 + AluSq/x SINE Alu 1 134 -178 1835 144 3 3 chr12 57664509 57664794 -86121661 + AluSx SINE Alu 1 285 -27 390 21 0 0 chr12 57664794 57664841 -86121614 + (CA)n Simple_repeat Simple_repeat 2 48 0 40 49 0 0 chr12 57666080 57666141 -86120314 + AT_rich Low_complexity Low_complexity 1 61 0 218 200 0 0 chr12 57667030 57667070 -86119385 + MER5A DNA MER1_type 140 179 -10 531 0 0 0 chr12 57667130 57667189 -86119266 + (TA)n Simple_repeat Simple_repeat 2 60 0 561 282 24 47 chr12 57667677 57667890 -86118565 - MIR SINE MIR -7 255 48 41869 37 25 5 chr12 57668015 57674043 -86112412 - L1PA4 LINE L1 0 6155 1 270 0 0 0 chr12 57674126 57674156 -86112299 + (TG)n Simple_repeat Simple_repeat 2 31 0 2286 82 7 3 chr12 57675211 57675505 -86110950 + AluSg SINE Alu 1 295 -15 374 260 63 99 chr12 57676009 57676232 -86110223 + L3 LINE CR1 1191 1405 -172 1319 87 54 0 chr12 57677501 57677736 -86108719 + L1PA5 LINE L1 5872 6155 0 23 0 0 0 chr12 57677769 57677792 -86108663 + AT_rich Low_complexity Low_complexity 1 23 0 2072 96 0 16 chr12 57677962 57678265 -86108190 - AluY SINE Alu -1 310 13 598 221 18 35 chr12 57678265 57678451 -86108004 - L1M4 LINE L1 -675 5499 5324 1756 208 34 5 chr12 57678641 57679079 -86107376 - L1P LINE L1 -5691 455 5 25 0 0 0 chr12 57679193 57679218 -86107237 + AT_rich Low_complexity Low_complexity 1 25 0 2331 80 0 3 chr12 57681414 57681716 -86104739 + AluSc SINE Alu 1 301 -8 195 42 0 0 chr12 57682166 57682190 -86104265 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 27 49 0 0 chr12 57682307 57682348 -86104107 + AT_rich Low_complexity Low_complexity 1 41 0 25 90 0 0 chr12 57682436 57682503 -86103952 + AT_rich Low_complexity Low_complexity 1 67 0 31 58 0 0 chr12 57682924 57682976 -86103479 + AT_rich Low_complexity Low_complexity 1 52 0 221 0 35 0 chr12 57683068 57683097 -86103358 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 42230 39 23 0 chr12 57683099 57689097 -86097358 - L1PA3 LINE L1 -15 6140 1 617 273 135 25 chr12 57689383 57689566 -86096889 + L1ME3A LINE L1 3892 4054 -2092 2444 69 0 3 chr12 57689566 57689869 -86096586 + AluY SINE Alu 1 302 -9 617 273 135 25 chr12 57689869 57690014 -86096441 + L1ME3A LINE L1 4054 4182 -1964 1385 127 14 0 chr12 57690014 57690235 -86096220 + L1PA15 LINE L1 5938 6161 -4 617 273 135 25 chr12 57690235 57690425 -86096030 + L1ME3A LINE L1 4182 4468 -1678 2001 148 3 0 chr12 57690445 57690743 -86095712 - AluSx SINE Alu -13 299 1 277 289 10 10 chr12 57691020 57691124 -86095331 + L1ME3A LINE L1 5410 5513 -649 313 189 27 40 chr12 57691131 57691205 -86095250 + MER106B DNA MER1_type 1 73 -986 23 54 0 0 chr12 57691233 57691270 -86095185 + AT_rich Low_complexity Low_complexity 1 37 0 467 274 85 52 chr12 57691477 57691805 -86094650 + L1ME3A LINE L1 5579 5917 -253 2025 181 33 7 chr12 57691815 57692234 -86094221 - L1MC3 LINE L1 -173 7612 7183 291 286 13 0 chr12 57692239 57692316 -86094139 - MLT1F1 LTR MaLR -453 114 37 237 271 6 59 chr12 57692677 57692847 -86093608 + T-rich Low_complexity Low_complexity 4 164 0 477 263 97 13 chr12 57692907 57693254 -86093201 - L1M LINE L1 -743 5403 5050 2619 84 5 24 chr12 57693257 57693627 -86092828 + THE1B LTR MaLR 1 363 -1 1923 93 11 0 chr12 57693628 57693897 -86092558 + THE1B-int LTR MaLR 1 272 -1308 271 190 17 0 chr12 57693940 57693998 -86092457 - L1M4 LINE L1 -1198 4948 4890 481 249 46 20 chr12 57694036 57694233 -86092222 - L1M4 LINE L1 -1334 4812 4611 2193 158 51 20 chr12 57694238 57694630 -86091825 + MER61C LTR ERV1 22 425 -9 504 247 6 76 chr12 57694641 57694799 -86091656 + MER61C-int LTR ERV1 2 148 -5069 562 161 0 97 chr12 57695044 57695199 -86091256 + MER61C-int LTR ERV1 315 454 -4763 * 960 206 18 22 chr12 57695182 57695256 -86091199 + MER61C-int LTR ERV1 676 749 -4468 306 237 13 0 chr12 57695256 57695332 -86091123 + MADE1 DNA Mariner 4 80 0 960 206 18 22 chr12 57695332 57695587 -86090868 + MER61C-int LTR ERV1 749 4162 -1055 2546 216 26 2 chr12 57695589 57696230 -86090225 - L1MC/D LINE L1 -519 6050 5396 445 320 105 10 chr12 57696861 57697061 -86089394 + HAL1 LINE L1 385 603 -1904 * 688 225 80 16 chr12 57697045 57697329 -86089126 - L1MC/D LINE L1 -3633 2749 2442 1846 131 102 44 chr12 57697555 57697899 -86088556 - THE1B LTR MaLR 0 364 1 641 168 46 62 chr12 57698094 57698269 -86088186 + LTR45 LTR ERV1 331 517 -8 4098 179 106 34 chr12 57698294 57699381 -86087074 - L1MC/D LINE L1 -3940 2444 1280 6498 187 24 26 chr12 57699518 57700912 -86085543 - L1MC/D LINE L1 -4969 1415 24 473 246 81 50 chr12 57700920 57701464 -86084991 - L1M4 LINE L1 -2697 3449 2889 658 304 33 35 chr12 57701477 57701872 -86084583 - L1M4 LINE L1 -3328 2818 2425 376 217 0 0 chr12 57701886 57701955 -86084500 + MER54B LTR ERVL 614 682 -111 985 142 13 0 chr12 57702004 57702159 -86084296 + MER54A LTR ERVL 745 901 0 1045 287 85 9 chr12 57702166 57702591 -86083864 - L1MC4 LINE L1 -191 7851 7395 409 242 83 0 chr12 57702712 57702832 -86083623 - L1MC4 LINE L1 -972 7070 6941 253 219 0 0 chr12 57702847 57702911 -86083544 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 21 57 0 0 chr12 57702969 57703004 -86083451 + AT_rich Low_complexity Low_complexity 1 35 0 4550 160 0 0 chr12 57703004 57703778 -86082677 - L1PA10 LINE L1 -1013 5133 4360 6613 83 4 7 chr12 57703781 57704785 -86081670 + L1PA10 LINE L1 5158 6159 -9 26 64 0 0 chr12 57705050 57705097 -86081358 + AT_rich Low_complexity Low_complexity 1 47 0 201 293 0 12 chr12 57705216 57705298 -86081157 + T-rich Low_complexity Low_complexity 2 82 0 1707 104 0 0 chr12 57705802 57706042 -86080413 + L1PB1 LINE L1 5911 6150 -1 606 190 16 0 chr12 57706065 57706186 -86080269 + L1PA15 LINE L1 6024 6146 -19 1762 108 85 0 chr12 57706190 57706469 -86079986 - AluSx SINE Alu 0 301 1 267 31 0 0 chr12 57707727 57707759 -86078696 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr12 57708909 57708931 -86077524 + AT_rich Low_complexity Low_complexity 1 22 0 579 361 75 19 chr12 57709424 57709839 -86076616 - L3 LINE CR1 -72 1505 1068 1115 93 43 0 chr12 57710256 57710418 -86076037 + L1PA11 LINE L1 5941 6109 -65 31 0 0 0 chr12 57710557 57710588 -86075867 + AT_rich Low_complexity Low_complexity 1 31 0 401 109 0 0 chr12 57710782 57710846 -86075609 + L1PA11 LINE L1 6111 6174 0 34 0 0 0 chr12 57711613 57711647 -86074808 + AT_rich Low_complexity Low_complexity 1 34 0 742 191 7 40 chr12 57712394 57712546 -86073909 - FRAM SINE Alu -13 163 17 6249 83 9 4 chr12 57712650 57713959 -86072496 - L1PA12 LINE L1 -11 6157 4842 211 200 67 0 chr12 57715250 57715295 -86071160 + L2 LINE L2 3225 3272 0 307 23 0 23 chr12 57718002 57718045 -86068410 + MADE1 DNA Mariner 1 42 -38 581 323 35 63 chr12 57718604 57718975 -86067480 - L2 LINE L2 -1281 2033 1672 2154 111 10 3 chr12 57718975 57719282 -86067173 - AluSx SINE Alu -3 309 1 581 323 35 63 chr12 57719282 57719306 -86067149 - L2 LINE L2 -1642 1672 1649 424 340 37 42 chr12 57719593 57719808 -86066647 - MIR SINE MIR -1 261 48 1085 264 67 3 chr12 57719914 57720243 -86066212 + MLT1-int LTR MaLR 229 578 -793 698 307 61 32 chr12 57720452 57721060 -86065395 + L1MA5 LINE L1 2 933 -5720 2189 134 132 5 chr12 57721060 57721440 -86065015 + MSTA LTR MaLR 1 428 0 698 307 61 32 chr12 57721440 57721559 -86064896 + L1MA5 LINE L1 933 1047 -5606 2739 300 12 6 chr12 57721663 57722389 -86064066 + L1MA3 LINE L1 423 1153 -5500 10199 163 25 14 chr12 57722497 57725562 -86060893 + L1MA3 LINE L1 3791 6891 0 12061 187 43 30 chr12 57725572 57725806 -86060649 + L1MA5 LINE L1 3118 3347 -3573 2226 85 0 7 chr12 57725806 57726101 -86060354 + AluSg1 SINE Alu 1 293 -16 12061 187 43 30 chr12 57726101 57729152 -86057303 + L1MA5 LINE L1 3347 6477 -443 434 104 15 0 chr12 57729152 57729264 -86057191 - AluSg/x SINE Alu 0 327 215 12061 187 43 30 chr12 57729264 57729678 -86056777 + L1MA5 LINE L1 6477 6884 -36 25 31 0 0 chr12 57730120 57730152 -86056303 + AT_rich Low_complexity Low_complexity 1 32 0 5033 66 0 0 chr12 57730895 57731531 -86054924 - L1PA5 LINE L1 -4 6150 5515 14193 68 1 4 chr12 57731540 57733381 -86053074 + L1PA3 LINE L1 11 1844 -4302 19211 37 0 0 chr12 57733381 57736499 -86049956 + L1PA3 LINE L1 3035 6152 -3 1760 58 0 0 chr12 57736548 57736771 -86049684 - L1PA5 LINE L1 -623 5531 5309 385 109 16 0 chr12 57737113 57737177 -86049278 - L1PA16 LINE L1 -9 6157 6093 2922 34 0 0 chr12 57737458 57737810 -86048645 - L1PA2 LINE L1 0 6155 5804 2103 104 14 3 chr12 57737830 57738146 -86048309 + AluSx SINE Alu 1 312 0 34 79 0 0 chr12 57738787 57738863 -86047592 + AT_rich Low_complexity Low_complexity 1 76 0 189 0 0 0 chr12 57741616 57741637 -86044818 + (TG)n Simple_repeat Simple_repeat 2 22 0 640 269 112 24 chr12 57743196 57743606 -86042849 - LTR33 LTR ERVL 0 521 36 184 284 88 10 chr12 57743982 57744084 -86042371 - MIR SINE MIR -80 182 73 293 140 55 24 chr12 57744741 57744842 -86041613 - L1MA9 LINE L1 -12 6279 6180 * 511 193 8 17 chr12 57744825 57744944 -86041511 - L1MA8 LINE L1 -32 6259 6142 1441 237 31 45 chr12 57745299 57745717 -86040738 + MLT1C LTR MaLR 1 412 -55 210 37 0 0 chr12 57745717 57745744 -86040711 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 188 83 0 28 chr12 57745763 57745799 -86040656 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6247 23 3 0 chr12 57745799 57746526 -86039929 - L1PA3 LINE L1 -24 6131 5403 * 10125 22 0 0 chr12 57746521 57747722 -86038733 + L1PA3 LINE L1 4203 5403 -743 962 288 27 17 chr12 57747816 57748115 -86038340 + MLT1H LTR MaLR 52 353 -196 230 279 0 0 chr12 57748194 57748262 -86038193 + MLT1H LTR MaLR 480 547 -2 1162 95 185 0 chr12 57748782 57749004 -86037451 - L1MA8 LINE L1 -2 6289 6027 258 246 15 0 chr12 57749796 57749861 -86036594 - MIR SINE MIR -93 169 104 1342 138 9 14 chr12 57751059 57751277 -86035178 + Tigger4(Zombi) DNA MER2_type 2513 2729 -2 312 297 97 6 chr12 57751454 57751619 -86034836 + HAL1 LINE L1 18 197 -2310 809 321 144 20 chr12 57751779 57752580 -86033875 + HAL1 LINE L1 406 1305 -1202 4885 208 38 15 chr12 57752617 57753381 -86033074 + L1MC1 LINE L1 4130 4875 -1458 1856 183 16 19 chr12 57753381 57753747 -86032708 - MLT1A1 LTR MaLR 0 365 1 4885 208 38 15 chr12 57753747 57755023 -86031432 + L1MC1 LINE L1 4875 6221 -112 28 48 0 0 chr12 57755192 57755234 -86031221 + AT_rich Low_complexity Low_complexity 1 42 0 233 244 23 47 chr12 57856380 57856466 -85929989 + MIR3 SINE MIR 82 165 -43 2167 97 0 42 chr12 57856564 57856728 -85929727 - AluSx SINE Alu -15 297 151 2131 74 7 10 chr12 57856728 57857024 -85929431 - AluSg SINE Alu -15 295 1 2167 97 0 42 chr12 57857024 57857169 -85929286 - AluSx SINE Alu -161 151 1 348 125 47 0 chr12 57858334 57858398 -85928057 - L1MB3 LINE L1 -62 6121 6055 426 137 0 55 chr12 57858399 57858472 -85927983 - Alu SINE Alu -9 303 235 1292 105 37 0 chr12 57858474 57858664 -85927791 + AluSp SINE Alu 111 307 -6 577 167 246 0 chr12 57858702 57858840 -85927615 + MER41C LTR ERV1 220 391 -163 1597 69 5 14 chr12 57858861 57859077 -85927378 + AluSc SINE Alu 2 215 -94 820 141 35 28 chr12 57859195 57859337 -85927118 - AluSc SINE Alu -35 274 132 2218 97 3 7 chr12 57859337 57859647 -85926808 - AluSq SINE Alu -4 309 1 324 299 102 45 chr12 57859699 57859856 -85926599 + MIR SINE MIR 31 196 -66 1965 126 23 3 chr12 57859891 57860193 -85926262 + AluSx SINE Alu 1 308 -4 2176 106 6 3 chr12 57860197 57860509 -85925946 + AluSp SINE Alu 1 313 0 749 136 119 0 chr12 57860521 57860639 -85925816 + AluJb SINE Alu 2 133 -179 2113 111 0 7 chr12 57860640 57860919 -85925536 + AluSx SINE Alu 1 277 -35 205 130 65 43 chr12 57864300 57864346 -85922109 - MIR SINE MIR -72 190 144 2246 92 3 3 chr12 57864348 57864630 -85921825 + AluSx SINE Alu 1 282 -30 592 228 0 8 chr12 57864650 57864773 -85921682 - MIR SINE MIR -108 154 33 337 253 95 76 chr12 57864850 57865176 -85921279 - L2 LINE L2 -215 3057 2287 437 50 17 0 chr12 57865211 57865271 -85921184 + (TTTTC)n Simple_repeat Simple_repeat 3 63 0 2447 100 7 0 chr12 57865280 57865589 -85920866 - AluSx SINE Alu -1 311 1 2759 45 0 0 chr12 57866392 57866703 -85919752 - AluY SINE Alu 0 311 1 286 346 0 15 chr12 57867404 57867540 -85918915 + C-rich Low_complexity Low_complexity 3 136 0 424 310 4 18 chr12 57867767 57867986 -85918469 + CT-rich Low_complexity Low_complexity 1 215 0 234 95 0 48 chr12 57868109 57868172 -85918283 + (CCCG)n Simple_repeat Simple_repeat 2 61 0 180 200 0 0 chr12 57868218 57868258 -85918197 + C-rich Low_complexity Low_complexity 3 42 0 339 25 0 0 chr12 57868393 57868433 -85918022 + (CGG)n Simple_repeat Simple_repeat 3 42 0 195 100 0 0 chr12 57870564 57870594 -85915861 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 192 125 0 0 chr12 57870703 57870735 -85915720 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 362 232 98 0 chr12 57871937 57872019 -85914436 - L2 LINE L2 -5 3267 3178 355 244 15 30 chr12 57875119 57875254 -85911201 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 22 0 0 0 chr12 57875441 57875463 -85910992 + AT_rich Low_complexity Low_complexity 1 22 0 186 259 35 35 chr12 57876410 57876468 -85909987 + MIR SINE MIR 109 166 -96 2244 94 7 13 chr12 57878480 57878788 -85907667 + AluSg SINE Alu 1 306 -4 851 220 0 11 chr12 57878793 57878970 -85907485 + FAM SINE Alu 1 175 0 191 279 157 78 chr12 57879663 57879867 -85906588 - MIR SINE MIR 0 262 43 2362 95 0 0 chr12 57883357 57883651 -85902804 + AluSg SINE Alu 1 294 -16 752 97 0 0 chr12 57883724 57883827 -85902628 + MSTA LTR MaLR 259 361 -67 1866 135 14 14 chr12 57883942 57884231 -85902224 + AluJo SINE Alu 6 294 -18 2305 100 13 3 chr12 57884232 57884531 -85901924 + AluSq SINE Alu 1 302 -11 275 353 29 0 chr12 57884979 57885115 -85901340 - MER5B DNA MER1_type -16 162 23 2452 82 3 3 chr12 57885225 57885528 -85900927 + AluSp SINE Alu 1 303 -10 2249 82 38 7 chr12 57886983 57887109 -85899346 + AluSq SINE Alu 1 122 -191 230 0 33 0 chr12 57887109 57887139 -85899316 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2249 82 38 7 chr12 57887139 57887304 -85899151 + AluSq SINE Alu 122 301 -12 2383 64 0 45 chr12 57887702 57888013 -85898442 + AluY SINE Alu 1 297 -14 1737 153 83 3 chr12 57888263 57888602 -85897853 - MER47A DNA MER2_type 0 366 1 2099 118 28 3 chr12 57889224 57889511 -85896944 + AluSx SINE Alu 1 294 -18 2133 112 3 10 chr12 57889513 57889807 -85896648 + AluSx SINE Alu 1 292 -20 2178 109 3 13 chr12 57889810 57890114 -85896341 + AluSx SINE Alu 1 301 -11 424 310 4 18 chr12 57890718 57890937 -85895518 + CT-rich Low_complexity Low_complexity 1 215 0 205 113 0 38 chr12 57891060 57891113 -85895342 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 180 200 0 0 chr12 57891172 57891212 -85895243 + C-rich Low_complexity Low_complexity 3 42 0 339 25 0 0 chr12 57891347 57891387 -85895068 + (CGG)n Simple_repeat Simple_repeat 3 42 0 195 100 0 0 chr12 57893519 57893549 -85892906 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 192 125 0 0 chr12 57893658 57893690 -85892765 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 362 232 98 0 chr12 57894892 57894974 -85891481 - L2 LINE L2 -5 3267 3178 355 244 15 30 chr12 57898074 57898209 -85888246 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 22 0 0 0 chr12 57898396 57898418 -85888037 + AT_rich Low_complexity Low_complexity 1 22 0 186 259 35 35 chr12 57899365 57899423 -85887032 + MIR SINE MIR 109 166 -96 1741 118 0 0 chr12 57900400 57900628 -85885827 + AluJb SINE Alu 67 294 -18 2115 132 16 7 chr12 57900631 57900759 -85885696 + AluSx SINE Alu 1 126 -186 240 35 0 0 chr12 57900759 57900788 -85885667 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2115 132 16 7 chr12 57900788 57900963 -85885492 + AluSx SINE Alu 126 307 -5 290 254 140 9 chr12 57900963 57901077 -85885378 + MIR SINE MIR 63 191 -71 1487 144 112 12 chr12 57901216 57901466 -85884989 + AluSx SINE Alu 27 301 -11 1120 124 5 18 chr12 57901467 57901701 -85884754 - MSTA LTR MaLR 0 428 122 2362 95 0 0 chr12 57901712 57902006 -85884449 - AluSg SINE Alu -16 294 1 191 279 157 78 chr12 57905500 57905704 -85880751 + MIR SINE MIR 43 262 0 851 220 0 11 chr12 57906397 57906574 -85879881 - FAM SINE Alu 0 175 1 2238 97 7 13 chr12 57906579 57906888 -85879567 - AluSg SINE Alu -3 307 1 1597 185 21 11 chr12 57908050 57908336 -85878119 + AluJo SINE Alu 1 289 -23 2232 91 20 10 chr12 57908839 57909137 -85877318 - AluSc SINE Alu -8 301 1 2268 77 13 32 chr12 57909137 57909450 -85877005 - AluSp SINE Alu -6 307 1 478 343 60 0 chr12 57909774 57909940 -85876515 + MIR SINE MIR 16 191 -71 906 130 0 14 chr12 57909941 57910079 -85876376 + AluJo SINE Alu 2 137 -175 2143 108 17 17 chr12 57910088 57910384 -85876071 + AluSx SINE Alu 3 298 -14 246 203 38 63 chr12 57910388 57910467 -85875988 + MIR SINE MIR 185 261 -1 26 0 0 0 chr12 57910468 57910494 -85875961 + AT_rich Low_complexity Low_complexity 1 26 0 820 422 112 8 chr12 57911121 57911389 -85875066 + AluSp SINE Alu 1 296 -7 666 174 0 8 chr12 57911389 57911510 -85874945 - AluJo/FLAM SINE Alu -191 121 2 318 197 120 8 chr12 57911668 57911785 -85874670 + L1ME4a LINE L1 5992 6121 0 2426 67 0 39 chr12 57911879 57912191 -85874264 - AluY SINE Alu -11 300 1 611 220 0 0 chr12 57912196 57912314 -85874141 - FLAM_C SINE Alu -15 128 11 491 254 250 26 chr12 57912360 57912592 -85873863 + MER5C DNA MER1_type 2 285 -39 639 202 39 8 chr12 57912625 57912754 -85873701 + FLAM_A SINE Alu 1 133 0 1504 79 0 0 chr12 57912874 57913052 -85873403 + AluSg SINE Alu 1 178 -132 521 147 0 0 chr12 57913053 57913128 -85873327 + AluSc SINE Alu 211 285 -24 2217 110 3 0 chr12 57913149 57913440 -85873015 + AluSx SINE Alu 13 304 -8 2403 86 0 10 chr12 57913527 57913828 -85872627 + AluSg SINE Alu 1 298 -12 2626 61 0 6 chr12 57915784 57916096 -85870359 + AluSg SINE Alu 1 310 0 244 246 0 0 chr12 57917435 57917492 -85868963 + (CA)n Simple_repeat Simple_repeat 1 57 0 643 158 0 0 chr12 57919256 57919357 -85867098 - AluJ/FLAM SINE Alu -211 101 1 1580 197 7 33 chr12 57919359 57919664 -85866791 - AluJo SINE Alu -15 297 1 1602 113 13 4 chr12 57919698 57919936 -85866519 + SVA Other Other 728 967 -419 207 0 0 0 chr12 57919936 57919959 -85866496 + (A)n Simple_repeat Simple_repeat 1 23 0 1871 142 4 0 chr12 57919966 57920233 -85866222 - AluSx SINE Alu -44 268 1 1814 168 21 0 chr12 57920238 57920523 -85865932 - AluJb SINE Alu -21 291 1 8168 134 21 31 chr12 57920523 57920916 -85865539 + LTR49-int LTR ERV1 4858 5253 -1078 1976 175 10 0 chr12 57920916 57921225 -85865230 - AluSx SINE Alu 0 312 1 8168 134 21 31 chr12 57921225 57921387 -85865068 + LTR49-int LTR ERV1 5253 5415 -916 2234 117 0 3 chr12 57921387 57921685 -85864770 + AluSx SINE Alu 6 302 -10 8168 134 21 31 chr12 57921685 57922616 -85863839 + LTR49-int LTR ERV1 5415 6331 0 3123 135 53 9 chr12 57922616 57923186 -85863269 + LTR49 LTR ERV1 1 595 0 2348 257 71 53 chr12 57923190 57923435 -85863020 - HAL1 LINE L1 -814 1693 1454 2148 117 0 37 chr12 57923435 57923573 -85862882 + AluSx SINE Alu 1 143 -169 2329 62 0 59 chr12 57923573 57923893 -85862562 + AluY SINE Alu 1 301 -10 2078 113 0 20 chr12 57923894 57924196 -85862259 + AluSg SINE Alu 3 298 -12 2148 117 0 37 chr12 57924196 57924379 -85862076 + AluSx SINE Alu 142 312 0 2348 257 71 53 chr12 57924379 57924505 -85861950 - HAL1 LINE L1 -1053 1454 1332 1949 144 7 7 chr12 57924505 57924796 -85861659 - AluJb SINE Alu -21 291 1 2348 257 71 53 chr12 57924796 57925079 -85861376 - HAL1 LINE L1 -1175 1332 1056 1762 110 17 0 chr12 57925079 57925316 -85861139 + AluSg SINE Alu 64 304 -6 2348 257 71 53 chr12 57925316 57925781 -85860674 - HAL1 LINE L1 -1451 1056 551 2252 112 3 16 chr12 57925889 57926202 -85860253 + AluSc SINE Alu 1 309 0 232 219 95 117 chr12 57926218 57926355 -85860100 + MLT1D LTR MaLR 68 201 -304 180 176 0 0 chr12 57927073 57927107 -85859348 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 287 232 43 0 chr12 57927222 57927291 -85859164 - MIR SINE MIR -30 232 161 289 257 50 50 chr12 57927300 57927440 -85859015 - L1MC5 LINE L1 -15 7946 7807 * 601 274 89 8 chr12 57927426 57927663 -85858792 - L1MC4a LINE L1 -1983 5825 5570 1852 149 3 7 chr12 57927663 57927951 -85858504 - AluJb SINE Alu -13 299 13 338 225 34 0 chr12 57929473 57929562 -85856893 + AluS SINE Alu 1 92 -211 2250 105 13 10 chr12 57929801 57930106 -85856349 - AluSx SINE Alu -6 306 1 222 257 37 73 chr12 57930360 57930469 -85855986 - L2 LINE L2 -508 2806 2702 757 265 32 40 chr12 57930642 57930850 -85855605 - MIR SINE MIR -3 259 52 2476 82 3 0 chr12 57930850 57931154 -85855301 + AluSp SINE Alu 1 305 -8 757 265 32 40 chr12 57931154 57931194 -85855261 - MIR SINE MIR -210 52 13 370 348 82 34 chr12 57931284 57931451 -85855004 + L2 LINE L2 2968 3125 -188 2444 72 3 0 chr12 57931451 57931741 -85854714 + AluSg SINE Alu 2 292 -18 370 348 82 34 chr12 57931741 57931901 -85854554 + L2 LINE L2 3125 3311 -2 280 339 193 14 chr12 57931930 57932210 -85854245 - L2 LINE L2 -767 2547 2218 * 1015 261 113 17 chr12 57932194 57932881 -85853574 - L2 LINE L2 -4 3309 2482 1017 193 0 57 chr12 57933085 57933349 -85853106 - AluJb SINE Alu 0 321 71 230 130 19 56 chr12 57933451 57933505 -85852950 + AluJo SINE Alu 85 136 -166 222 37 0 0 chr12 57933585 57933612 -85852843 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2251 117 0 7 chr12 57934042 57934350 -85852105 + AluSg1 SINE Alu 1 306 -3 564 169 0 0 chr12 57935157 57935246 -85851209 + AluS SINE Alu 5 93 -220 1959 158 0 0 chr12 57935266 57935558 -85850897 + AluSg SINE Alu 1 292 -18 297 0 0 0 chr12 57935887 57935920 -85850535 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2194 98 0 7 chr12 57935920 57936200 -85850255 - AluSg SINE Alu -32 278 1 1841 168 7 10 chr12 57936400 57936709 -85849746 + AluJo SINE Alu 1 308 -4 2188 106 4 0 chr12 57936893 57937167 -85849288 - AluSx SINE Alu -17 295 21 2596 70 0 3 chr12 57937188 57937500 -85848955 - AluY SINE Alu 0 311 1 2028 153 6 10 chr12 57937965 57938278 -85848177 + AluJb SINE Alu 1 312 0 2533 66 0 0 chr12 57939112 57939414 -85847041 + AluSx SINE Alu 1 302 -10 2071 126 0 11 chr12 57939416 57939702 -85846753 - AluSq SINE Alu -30 283 1 1073 114 17 6 chr12 57939702 57939877 -85846578 + MER41C LTR ERV1 378 554 0 387 268 122 38 chr12 57939917 57940130 -85846325 - L1MC4 LINE L1 -219 7823 7593 222 231 77 0 chr12 57940412 57940490 -85845965 + L2 LINE L2 3168 3251 -21 24 53 0 0 chr12 57941602 57941640 -85844815 + GC_rich Low_complexity Low_complexity 1 38 0 33 43 0 0 chr12 57941720 57941767 -85844688 + GC_rich Low_complexity Low_complexity 1 47 0 269 286 12 12 chr12 57942822 57942906 -85843549 + C-rich Low_complexity Low_complexity 4 87 0 2336 102 6 16 chr12 57944136 57944449 -85842006 + AluSx SINE Alu 1 310 -2 185 296 92 41 chr12 57946106 57946204 -85840251 - L2 LINE L2 -1 3312 3210 542 184 10 0 chr12 57947094 57947197 -85839258 - MER58 DNA MER1_type 0 2420 2317 298 214 191 12 chr12 57947208 57947292 -85839163 - MER58 DNA MER1_type -2321 99 1 1497 164 39 29 chr12 57947512 57947793 -85838662 + AluJo SINE Alu 9 292 -20 2197 112 13 7 chr12 57947943 57948247 -85838208 + AluSq SINE Alu 1 306 -7 2398 88 3 0 chr12 57948333 57948629 -85837826 + AluSg SINE Alu 1 297 -13 218 303 64 18 chr12 57948645 57948754 -85837701 - MIR SINE MIR -148 114 1 493 93 0 0 chr12 57949872 57949947 -85836508 - Alu SINE Alu -5 305 231 266 306 60 37 chr12 57950051 57950185 -85836270 + MIR SINE MIR 80 216 -46 282 29 0 0 chr12 57952253 57952288 -85834167 + (CA)n Simple_repeat Simple_repeat 2 36 0 543 243 119 6 chr12 57953960 57954137 -85832318 - MIR3 SINE MIR -9 199 3 327 247 11 54 chr12 57955446 57955539 -85830916 + MIR3 SINE MIR 72 160 -48 285 200 15 154 chr12 57955539 57955622 -85830833 + MER5B DNA MER1_type 1 61 -117 2476 74 0 0 chr12 57955622 57955920 -85830535 + AluSg SINE Alu 1 298 -12 285 200 15 154 chr12 57955920 57955966 -85830489 + MER5B DNA MER1_type 61 112 -66 1252 133 5 5 chr12 57956153 57956341 -85830114 + AluSg/x SINE Alu 108 295 -15 2351 84 0 26 chr12 57956383 57956691 -85829764 - AluSc SINE Alu -9 300 1 336 315 0 39 chr12 57957006 57957133 -85829322 - MIR3 SINE MIR -31 177 56 376 316 22 7 chr12 57957200 57957336 -85829119 - MIR SINE MIR -114 148 11 340 314 75 6 chr12 57957396 57957555 -85828900 - MIR3 SINE MIR -20 188 19 192 40 0 0 chr12 57957629 57957654 -85828801 + (TG)n Simple_repeat Simple_repeat 1 25 0 253 281 39 96 chr12 57959162 57959340 -85827115 - MIR SINE MIR -62 200 33 1349 131 23 0 chr12 57960244 57960458 -85825997 - MER20 DNA MER1_type 0 219 1 4573 186 21 0 chr12 57960543 57961537 -85824918 - L1MB7 LINE L1 -11 6173 5158 509 126 0 0 chr12 57961545 57961632 -85824823 - AluSc SINE Alu -9 300 214 1992 165 3 7 chr12 57961634 57962080 -85824375 + AluSx SINE Alu 1 308 -4 656 225 6 0 chr12 57962080 57962249 -85824206 + L1M4 LINE L1 3185 3354 -2792 313 221 0 15 chr12 57962248 57962316 -85824139 - L1M4 LINE L1 -5371 1171 1105 * 2398 102 0 6 chr12 57962316 57962630 -85823825 - AluSx SINE Alu 0 312 1 3259 209 91 70 chr12 57962869 57963899 -85822556 - L1M4 LINE L1 -5477 1065 14 378 151 44 36 chr12 57963999 57964069 -85822386 + L1M2 LINE L1 5546 5618 -550 541 121 83 83 chr12 57964069 57964201 -85822254 + FLAM_C SINE Alu 2 133 0 378 151 44 36 chr12 57964201 57964262 -85822193 + L1M2 LINE L1 5618 5677 -491 2368 74 0 3 chr12 57964523 57964829 -85821626 - AluY SINE Alu 0 305 1 1070 166 10 0 chr12 57965617 57965810 -85820645 + L1MA9 LINE L1 5588 5782 -530 1545 170 8 20 chr12 57965810 57966057 -85820398 + AluJb SINE Alu 1 244 -68 2500 80 13 80 chr12 57966057 57966455 -85820000 - MER51B LTR ERV1 -6 371 1 399 164 0 0 chr12 57966456 57966523 -85819932 + AluJb SINE Alu 236 302 0 919 115 19 0 chr12 57966534 57966690 -85819765 + L1MA9 LINE L1 5785 5943 -369 2369 104 7 0 chr12 57966695 57967004 -85819451 + AluSp SINE Alu 1 311 -2 2194 186 12 52 chr12 57967131 57967398 -85819057 + MER66B LTR ERV1 2 241 -245 2622 29 9 35 chr12 57967398 57967714 -85818741 + AluY SINE Alu 3 310 -1 2194 186 12 52 chr12 57967714 57967951 -85818504 + MER66B LTR ERV1 241 486 0 2414 76 0 0 chr12 57968049 57968391 -85818064 - AluY SINE Alu 0 311 1 2078 91 44 11 chr12 57968930 57969051 -85817404 + AluSg SINE Alu 1 117 -194 2639 50 0 0 chr12 57969051 57969354 -85817101 + AluY SINE Alu 1 303 -8 2078 91 44 11 chr12 57969354 57969534 -85816921 + AluSg SINE Alu 117 311 0 2258 118 3 13 chr12 57969854 57970169 -85816286 + AluSx SINE Alu 1 312 0 204 290 0 0 chr12 57970710 57970772 -85815683 + (CCCTAA)n Simple_repeat Simple_repeat 3 64 0 207 69 0 0 chr12 57970784 57970813 -85815642 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 518 245 161 0 chr12 57971211 57971366 -85815089 - MER5A DNA MER1_type 0 189 10 2235 108 0 7 chr12 57971714 57972010 -85814445 + AluSx SINE Alu 1 294 -18 324 346 76 20 chr12 57972194 57972497 -85813958 - L2 LINE L2 -353 2961 2642 1125 157 0 28 chr12 57972497 57972675 -85813780 + AluJo SINE Alu 1 173 -139 564 218 0 0 chr12 57972676 57972777 -85813678 - AluJo/FRAM SINE Alu -44 268 168 434 162 0 0 chr12 57972775 57972843 -85813612 - AluS SINE Alu -244 69 2 * 1325 262 88 6 chr12 57973024 57973387 -85813068 - MSTD LTR MaLR 0 396 4 191 309 36 48 chr12 57973540 57973688 -85812767 - L2 LINE L2 0 3313 3166 802 206 12 0 chr12 57973688 57973848 -85812607 + FAM SINE Alu 1 162 -13 191 309 36 48 chr12 57973848 57973864 -85812591 - L2 LINE L2 -147 3166 3151 323 384 9 0 chr12 57973900 57974012 -85812443 - L2 LINE L2 -2 3311 3199 424 317 85 18 chr12 57974177 57974555 -85811900 - L2 LINE L2 -345 2969 2491 2368 75 0 0 chr12 57974567 57974869 -85811586 + AluSc SINE Alu 1 302 0 490 276 33 48 chr12 57974875 57975085 -85811370 + L1MC5 LINE L1 7707 7913 -48 1338 316 28 31 chr12 57975120 57975414 -85811041 - L2 LINE L2 -833 2481 2188 1097 130 21 5 chr12 57975414 57975606 -85810849 + L1MC1 LINE L1 6139 6333 0 1338 316 28 31 chr12 57975606 57975922 -85810533 - L2 LINE L2 -1126 2188 1873 207 0 0 0 chr12 57975927 57975950 -85810505 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1600 168 10 41 chr12 57975952 57976243 -85810212 - AluJo SINE Alu -30 282 1 1534 181 31 14 chr12 57976344 57976631 -85809824 + AluJo SINE Alu 1 292 -20 235 323 62 0 chr12 57976651 57976781 -85809674 - L2 LINE L2 -1562 1752 1615 1867 147 27 64 chr12 57976781 57977223 -85809232 + L1MB8 LINE L1 5677 6099 -79 2141 106 47 16 chr12 57977235 57977892 -85808563 - Tigger3(Golem) DNA MER2_type -2 3027 2278 538 206 9 0 chr12 57977883 57977990 -85808465 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 314 242 15 0 chr12 57977992 57978058 -85808397 - Tigger2 DNA MER2_type 0 2718 2652 1411 77 10 0 chr12 57978061 57978256 -85808199 + L1PA5 LINE L1 5958 6154 0 2386 77 0 10 chr12 57978281 57978579 -85807876 + AluY SINE Alu 1 295 -16 962 195 18 0 chr12 57978579 57978748 -85807707 + AluJb SINE Alu 134 305 -7 2492 96 0 0 chr12 57978823 57979135 -85807320 + AluSx SINE Alu 1 312 0 1577 190 17 0 chr12 57979184 57979473 -85806982 + L1MC4 LINE L1 6711 7004 -1038 1938 223 44 29 chr12 57979473 57979788 -85806667 + L1ME1 LINE L1 5630 5939 -227 1925 111 0 0 chr12 57979788 57980032 -85806423 + AluSx SINE Alu 38 281 -31 180 0 0 0 chr12 57980032 57980052 -85806403 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 1938 223 44 29 chr12 57980052 57980143 -85806312 + L1ME1 LINE L1 5939 6027 -139 2073 158 109 5 chr12 57980143 57980529 -85805926 + MSTB LTR MaLR 1 426 0 1938 223 44 29 chr12 57980529 57980645 -85805810 + L1ME1 LINE L1 6027 6162 -4 370 265 0 0 chr12 57980649 57980740 -85805715 + L1MC4 LINE L1 6915 7080 -803 362 211 0 2 chr12 57980743 57980822 -85805633 + L1MC4a LINE L1 5529 5597 -573 253 255 39 29 chr12 57980812 57980914 -85805541 + L1MC4a LINE L1 5856 5958 -1850 * 1713 162 16 26 chr12 57981163 57981471 -85804984 + AluJb SINE Alu 1 305 -7 210 71 0 0 chr12 57981471 57981499 -85804956 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 180 324 96 22 chr12 57981517 57981653 -85804802 + L2 LINE L2 2830 2975 -339 1728 134 7 53 chr12 57982910 57983193 -85803262 + AluJo SINE Alu 39 308 -4 223 271 12 163 chr12 57983309 57983567 -85802888 - L2 LINE L2 -839 2475 2257 2165 98 7 3 chr12 57983597 57983904 -85802551 + AluSx SINE Alu 1 308 0 206 133 0 22 chr12 57986532 57986577 -85799878 + (CA)n Simple_repeat Simple_repeat 1 44 0 226 341 0 87 chr12 57987507 57987549 -85798906 + L2 LINE L2 3188 3232 -81 2359 99 0 34 chr12 57987549 57987872 -85798583 - AluSx SINE Alu 0 312 1 2351 96 7 0 chr12 57987872 57988173 -85798282 - AluSx SINE Alu -8 304 1 226 341 0 87 chr12 57988173 57988267 -85798188 + L2 LINE L2 3230 3313 0 2305 102 7 0 chr12 57988826 57989120 -85797335 + AluSx SINE Alu 1 296 -16 613 225 131 63 chr12 57989611 57989802 -85796653 - MIR SINE MIR -12 250 47 7472 17 3 0 chr12 57990136 57991514 -85794941 + L1PA3 LINE L1 4771 6152 -3 207 88 0 0 chr12 57991518 57991552 -85794903 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2138 131 35 48 chr12 57991566 57992001 -85794454 + L1MA8 LINE L1 5863 6291 0 2191 107 10 13 chr12 57992517 57992817 -85793638 + AluSx SINE Alu 2 300 -12 904 129 29 0 chr12 57993745 57993884 -85792571 - FLAM_C SINE Alu 0 143 1 531 224 103 18 chr12 57995518 57995683 -85790772 + MIR SINE MIR 35 213 -49 498 272 73 15 chr12 57996285 57996491 -85789964 + MLT1J1 LTR MaLR 102 319 -127 266 277 43 11 chr12 57998585 57998679 -85787776 - MIR SINE MIR -138 124 28 219 173 0 0 chr12 58000515 58000567 -85785888 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 211 200 0 0 chr12 58001644 58001679 -85784776 + (CA)n Simple_repeat Simple_repeat 1 35 0 223 338 32 51 chr12 58001868 58001968 -85784487 + L2 LINE L2 2898 2995 -277 1512 139 0 9 chr12 58001968 58002183 -85784272 - AluJb SINE Alu -15 297 85 223 338 32 51 chr12 58002183 58002239 -85784216 + L2 LINE L2 2995 3051 -221 201 129 0 0 chr12 58002351 58002382 -85784073 + (GA)n Simple_repeat Simple_repeat 1 31 0 2058 112 0 48 chr12 58002388 58002567 -85783888 - AluSq SINE Alu -1 312 153 2405 42 42 3 chr12 58002567 58002852 -85783603 - AluY SINE Alu -15 296 1 2058 112 0 48 chr12 58002852 58002986 -85783469 - AluSq SINE Alu -160 153 14 255 268 0 42 chr12 58002987 58003058 -85783397 + L2 LINE L2 3205 3272 0 211 217 22 0 chr12 58003173 58003219 -85783236 + (CA)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr12 58003802 58003832 -85782623 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 210 48 0 chr12 58004816 58004878 -85781577 - L2 LINE L2 -7 3306 3242 225 286 0 18 chr12 58004886 58004942 -85781513 - L2 LINE L2 -17 3296 3242 457 287 47 7 chr12 58004945 58005095 -85781360 - MIR SINE MIR -6 256 101 483 213 43 28 chr12 58006043 58006184 -85780271 - MIR SINE MIR 0 262 120 201 74 0 0 chr12 58006590 58006617 -85779838 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 207 214 0 0 chr12 58007193 58007235 -85779220 + (CTA)n Simple_repeat Simple_repeat 2 43 0 261 299 6 19 chr12 58008201 58008358 -85778097 + C-rich Low_complexity Low_complexity 6 160 0 266 318 0 46 chr12 58008863 58009014 -85777441 + GA-rich Low_complexity Low_complexity 4 147 0 2268 109 13 0 chr12 58010463 58010765 -85775690 + AluSx SINE Alu 1 306 -6 1875 125 54 4 chr12 58010879 58011158 -85775297 + AluJo SINE Alu 1 293 -19 1669 219 65 39 chr12 58011146 58011589 -85774866 + L1MD2 LINE L1 5886 6340 -19 1975 115 7 11 chr12 58011606 58011885 -85774570 + AluSx SINE Alu 25 302 -10 445 121 0 0 chr12 58011972 58012038 -85774417 + Alu SINE Alu 242 307 -5 26 74 0 0 chr12 58012066 58012120 -85774335 + AT_rich Low_complexity Low_complexity 1 54 0 237 309 69 83 chr12 58012906 58013123 -85773332 + L3b LINE CR1 1155 1368 -215 743 251 105 0 chr12 58013817 58014008 -85772447 + MIR SINE MIR 2 212 -50 220 304 0 0 chr12 58014359 58014415 -85772040 - MIR3 SINE MIR 0 208 153 314 194 0 16 chr12 58014416 58014478 -85771977 + MER5B DNA MER1_type 1 61 -117 2155 96 0 14 chr12 58014480 58014616 -85771839 + AluSx SINE Alu 1 137 -175 2619 7 0 20 chr12 58014616 58014922 -85771533 + AluYa5 SINE Alu 1 300 -11 2155 96 0 14 chr12 58014922 58015076 -85771379 + AluSx SINE Alu 137 287 -25 377 229 0 10 chr12 58015088 58015185 -85771270 - L1MC4 LINE L1 -1340 6982 1995 193 255 39 0 chr12 58015189 58015240 -85771215 - MER5B DNA MER1_type -53 125 73 2268 69 0 16 chr12 58015246 58015549 -85770906 - AluY SINE Alu -12 299 2 660 118 0 0 chr12 58015549 58015642 -85770813 - AluJ/FLAM SINE Alu -217 95 3 232 273 25 8 chr12 58016648 58016769 -85769686 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr12 58016776 58016804 -85769651 + AT_rich Low_complexity Low_complexity 1 28 0 2146 136 64 42 chr12 58016843 58017209 -85769246 - L1MC3 LINE L1 -2 7783 7404 2400 66 0 3 chr12 58017209 58017511 -85768944 - AluY SINE Alu -10 301 1 2146 136 64 42 chr12 58017511 58017594 -85768861 - L1MC3 LINE L1 -381 7404 7324 242 73 24 0 chr12 58017586 58017627 -85768828 + THE1C-int LTR MaLR 1539 1580 0 * 1378 58 29 0 chr12 58017627 58017800 -85768655 + THE1C LTR MaLR 1 178 -197 374 192 0 26 chr12 58017801 58017879 -85768576 - L1MC3 LINE L1 -510 7275 7200 226 265 44 15 chr12 58017890 58017958 -85768497 - MLT1F1 LTR MaLR -457 110 41 214 177 48 0 chr12 58017973 58018035 -85768420 + (TA)n Simple_repeat Simple_repeat 1 65 0 2333 119 41 11 chr12 58018194 58018556 -85767899 - THE1C LTR MaLR 0 375 3 8994 102 55 10 chr12 58018558 58019858 -85766597 - THE1C-int LTR MaLR 0 1580 223 2679 90 16 24 chr12 58019858 58020224 -85766231 - THE1C LTR MaLR 0 375 11 5305 60 17 0 chr12 58020224 58020873 -85765582 + PABL_A LTR ERV1 1 660 0 2679 90 16 24 chr12 58020873 58020884 -85765571 - THE1C LTR MaLR -364 11 1 1735 75 0 4 chr12 58020884 58021112 -85765343 - THE1C-int LTR MaLR -1353 227 1 2716 87 27 8 chr12 58021112 58021480 -85764975 - THE1C LTR MaLR 0 375 1 9503 67 10 60 chr12 58021775 58023217 -85763238 + SVA Other Other 18 1386 0 827 188 58 0 chr12 58023226 58023380 -85763075 + FRAM SINE Alu 1 156 -20 354 113 0 0 chr12 58024802 58024855 -85761600 + L1 LINE L1 5227 5279 -867 945 69 0 41 chr12 58024855 58025000 -85761455 + AluY SINE Alu 173 311 0 2010 93 3 28 chr12 58025001 58025292 -85761163 + L1P4 LINE L1 5303 5586 -577 466 310 33 16 chr12 58025576 58025760 -85760695 + MIR SINE MIR 2 188 -74 567 220 110 44 chr12 58025778 58025960 -85760495 + L2 LINE L2 3120 3313 0 198 227 40 53 chr12 58025955 58026030 -85760425 + MIR SINE MIR 185 258 -4 * 335 346 72 0 chr12 58026533 58026686 -85759769 - LTR67 LTR ERVL -269 288 125 1530 180 3 21 chr12 58026860 58027143 -85759312 + AluJo SINE Alu 1 278 -34 278 303 10 0 chr12 58027196 58027295 -85759160 - ERVL LTR ERVL -2210 3554 3455 409 289 164 19 chr12 58027336 58027599 -85758856 - ERVL LTR ERVL -2282 3372 3072 455 322 55 40 chr12 58027815 58028088 -85758367 - ERVL LTR ERVL -2943 2821 2545 523 222 111 16 chr12 58028245 58028371 -85758084 + MIR SINE MIR 18 155 -107 805 279 13 17 chr12 58028384 58028617 -85757838 + MER69 DNA AcHobo 17 248 -978 276 270 0 14 chr12 58028606 58028680 -85757775 + MER69 DNA AcHobo 2453 2525 -1 * 226 292 0 14 chr12 58028680 58028752 -85757703 + MIR SINE MIR 165 235 -27 301 313 0 30 chr12 58028938 58029037 -85757418 + LTR67 LTR ERVL 4 99 -458 333 276 29 9 chr12 58029254 58029359 -85757096 + LTR67 LTR ERVL 448 554 -3 284 344 11 0 chr12 58029370 58029463 -85756992 + L2 LINE L2 2633 2726 -588 180 250 42 0 chr12 58029500 58029548 -85756907 - L3b LINE CR1 -255 1328 1279 26 30 0 0 chr12 58029858 58029891 -85756564 + AT_rich Low_complexity Low_complexity 1 33 0 821 154 0 0 chr12 58029897 58030014 -85756441 - FLAM_C SINE Alu -25 118 2 625 107 0 10 chr12 58030020 58030123 -85756332 - L1MA6 LINE L1 -6 6294 6193 248 119 0 48 chr12 58030155 58030197 -85756258 + MER49 LTR ERV1 67 106 -817 5020 153 2 20 chr12 58030280 58031071 -85755384 + MER49 LTR ERV1 102 880 -43 1821 131 6 62 chr12 58031071 58031391 -85755064 + AluJb SINE Alu 2 303 -9 5020 153 2 20 chr12 58031391 58031411 -85755044 + MER49 LTR ERV1 880 899 -24 1403 139 16 20 chr12 58031411 58031663 -85754792 - L1MA6 LINE L1 -110 6190 5940 1584 102 53 12 chr12 58031682 58031928 -85754527 + AluSq SINE Alu 58 313 0 390 295 23 15 chr12 58034193 58034328 -85752127 - MIR SINE MIR -85 123 11 417 341 40 20 chr12 58034845 58035142 -85751313 - L3 LINE CR1 -8 1569 1230 986 276 0 16 chr12 58035247 58035504 -85750951 - MIR SINE MIR -8 254 2 330 26 0 0 chr12 58035526 58035565 -85750890 + (A)n Simple_repeat Simple_repeat 1 39 0 2457 69 0 0 chr12 58035569 58035874 -85750581 + AluY SINE Alu 1 305 -6 201 345 0 0 chr12 58035896 58035951 -85750504 + L2 LINE L2 3217 3271 -1 234 356 23 0 chr12 58035954 58036041 -85750414 - MIR SINE MIR -115 147 59 325 340 80 0 chr12 58036270 58036420 -85750035 - MIR SINE MIR -44 218 57 468 340 79 47 chr12 58036816 58037157 -85749298 - L1ME4a LINE L1 -201 5920 5569 992 118 12 35 chr12 58037232 58037401 -85749054 - L1PB3 LINE L1 -9 6145 5981 864 123 105 0 chr12 58037770 58037932 -85748523 - L1MB2 LINE L1 -2 6169 5991 751 209 170 0 chr12 58039837 58040043 -85746412 + L2 LINE L2 1787 2027 -1287 602 318 162 34 chr12 58040087 58040456 -85745999 + L2 LINE L2 2297 2740 -574 2046 136 0 0 chr12 58040456 58040766 -85745689 - AluSx SINE Alu -2 310 1 602 318 162 34 chr12 58040766 58040865 -85745590 + L2 LINE L2 2740 2825 -489 849 163 0 0 chr12 58040887 58041016 -85745439 - FLAM_A SINE Alu -1 132 4 2743 167 48 31 chr12 58041034 58041556 -85744899 + MER74A LTR ERVL 28 558 0 283 331 138 0 chr12 58041563 58041708 -85744747 + L2 LINE L2 2851 3015 -298 1819 270 38 82 chr12 58042468 58042743 -85743712 + ERVL LTR ERVL 3087 3372 -2392 1812 141 0 14 chr12 58042743 58043026 -85743429 - AluJb SINE Alu -25 287 9 1819 270 38 82 chr12 58043026 58043669 -85742786 + ERVL LTR ERVL 3372 3965 -1799 231 36 0 0 chr12 58043669 58043697 -85742758 + (CAT)n Simple_repeat Simple_repeat 2 29 0 1156 254 8 0 chr12 58043697 58043949 -85742506 - MIR SINE MIR -8 254 1 795 255 45 21 chr12 58044017 58044260 -85742195 + ERVL LTR ERVL 4025 4273 -1491 1630 203 53 88 chr12 58044269 58044852 -85741603 + MLT1F1 LTR MaLR 1 565 -2 1512 282 33 62 chr12 58044852 58045461 -85740994 + ERVL LTR ERVL 4328 4918 -846 522 288 56 81 chr12 58045472 58045649 -85740806 + MLT1J LTR MaLR 27 207 -304 1782 195 72 19 chr12 58045649 58046024 -85740431 + MSTD LTR MaLR 2 396 0 522 288 56 81 chr12 58046024 58046343 -85740112 + MLT1J LTR MaLR 207 511 0 363 296 14 21 chr12 58046343 58046485 -85739970 + ERVL LTR ERVL 4869 5009 -476 1773 168 42 6 chr12 58046740 58047073 -85739382 - MER7A DNA MER2_type -3 343 1 1553 170 71 19 chr12 58047086 58047410 -85739045 - MER2 DNA MER2_type -3 341 1 438 174 0 0 chr12 58047431 58047500 -85738955 - MER2 DNA MER2_type -8 337 269 229 383 8 0 chr12 58047669 58047797 -85738658 + (TGGA)n Simple_repeat Simple_repeat 2 130 0 1022 265 91 6 chr12 58048140 58048491 -85737964 - HAL1 LINE L1 -628 1879 1499 1911 135 16 16 chr12 58049775 58050078 -85736377 - AluSx SINE Alu -9 303 1 300 281 16 33 chr12 58050382 58050503 -85735952 + CT-rich Low_complexity Low_complexity 2 120 0 40 67 0 0 chr12 58050729 58050804 -85735651 + AT_rich Low_complexity Low_complexity 1 75 0 693 186 0 17 chr12 58050804 58050922 -85735533 - AluSg SINE Alu -192 118 3 807 164 79 6 chr12 58051561 58051726 -85734729 - AluJb SINE Alu -2 310 134 1722 153 10 35 chr12 58051726 58051898 -85734557 - AluSq SINE Alu -8 305 143 2076 107 24 0 chr12 58051898 58052187 -85734268 - AluSq SINE Alu -17 296 1 1722 153 10 35 chr12 58052187 58052327 -85734128 - AluSq SINE Alu -170 143 1 685 264 82 38 chr12 58052888 58053180 -85733275 - MLT1H LTR MaLR 0 549 245 225 342 120 5 chr12 58053364 58053548 -85732907 - L2 LINE L2 -727 2587 2383 2272 211 25 37 chr12 58053659 58054366 -85732089 - LTR27 LTR ERV1 -2 634 5 274 150 0 0 chr12 58055091 58055131 -85731324 + MIR SINE MIR 112 151 -57 1517 223 71 69 chr12 58055141 58055679 -85730776 + MLT1F LTR MaLR 4 542 0 807 254 133 141 chr12 58055685 58057052 -85729403 + MLT1F-int LTR MaLR 15 1370 -1 1111 250 182 31 chr12 58057069 58057387 -85729068 + MLT1F1 LTR MaLR 17 286 -281 1950 148 0 0 chr12 58057387 58057678 -85728777 - AluSx SINE Alu -17 295 5 1111 250 182 31 chr12 58057678 58057839 -85728616 + MLT1F1 LTR MaLR 286 565 -2 357 266 104 58 chr12 58057879 58058052 -85728403 + MIR SINE MIR 32 212 -50 391 282 40 16 chr12 58059661 58059785 -85726670 + L2 LINE L2 2965 3091 -181 244 304 0 22 chr12 58060482 58060574 -85725881 + Charlie7 DNA MER1_type 5 94 -2518 549 214 62 62 chr12 58060575 58060753 -85725702 - MER104 DNA MER2_type -2 178 1 3619 146 3 1 chr12 58060788 58061753 -85724702 + L1PB1 LINE L1 4767 5733 -418 234 0 0 0 chr12 58061753 58061779 -85724676 + (TA)n Simple_repeat Simple_repeat 1 26 0 2408 111 8 3 chr12 58061780 58062140 -85724315 + L1PB1 LINE L1 5789 6150 -1 241 210 45 64 chr12 58062181 58062338 -85724117 + Charlie7 DNA MER1_type 2453 2606 -6 268 358 53 0 chr12 58063520 58063615 -85722840 + MIR SINE MIR 36 135 -73 256 292 11 56 chr12 58064175 58064264 -85722191 - L2 LINE L2 -4 3268 3184 23 0 0 71 chr12 58064288 58064308 -85722147 + AT_rich Low_complexity Low_complexity 1 18 -21 4349 123 18 3 chr12 58064308 58064976 -85721479 - L1PA16 LINE L1 -10 6156 5479 23 0 0 71 chr12 58064976 58064997 -85721458 + AT_rich Low_complexity Low_complexity 18 39 0 5853 112 24 7 chr12 58065099 58066760 -85719695 - L1PA13 LINE L1 -8 6155 4481 40503 52 6 1 chr12 58066760 58072874 -85713581 - L1PA4 LINE L1 -7 6148 7 1242 172 12 118 chr12 58072881 58073212 -85713243 - AluJo SINE Alu -4 298 3 7620 149 26 16 chr12 58073213 58074895 -85711560 - L1M2 LINE L1 -743 5403 3775 21 36 0 0 chr12 58074909 58074937 -85711518 + AT_rich Low_complexity Low_complexity 1 28 0 192 149 0 0 chr12 58074955 58075002 -85711453 + (T)n Simple_repeat Simple_repeat 1 47 0 39898 42 23 2 chr12 58075003 58081029 -85705426 - L1PA3 LINE L1 -1 6154 3 2411 201 43 8 chr12 58081030 58081673 -85704782 - L1M2 LINE L1 -2364 3782 3117 28 0 0 0 chr12 58081680 58081708 -85704747 + AT_rich Low_complexity Low_complexity 1 28 0 7190 170 6 10 chr12 58081712 58082072 -85704383 - L1PB1 LINE L1 -10 7560 7200 204 40 0 0 chr12 58082072 58082097 -85704358 + (TA)n Simple_repeat Simple_repeat 1 25 0 7190 170 6 10 chr12 58082097 58084170 -85702285 - L1PB1 LINE L1 -370 7200 5137 1325 170 36 12 chr12 58084166 58084507 -85701948 - L1PB1 LINE L1 -3707 3858 3512 * 25 65 0 0 chr12 58085660 58085706 -85700749 + AT_rich Low_complexity Low_complexity 1 46 0 382 295 97 64 chr12 58085790 58086132 -85700323 - ERVL LTR ERVL -1334 4430 4078 503 241 7 48 chr12 58086701 58086846 -85699609 - MLT1K LTR MaLR -5 583 445 24 0 0 0 chr12 58087744 58087768 -85698687 + AT_rich Low_complexity Low_complexity 1 24 0 3972 98 25 0 chr12 58088908 58089480 -85696975 + L1PA13 LINE L1 5578 6163 0 204 130 188 29 chr12 58090672 58090741 -85695714 - L2 LINE L2 -922 2392 2313 3670 190 17 7 chr12 58090787 58091625 -85694830 + L1M2 LINE L1 1965 2810 -4039 7376 39 1 0 chr12 58091641 58093096 -85693359 + L1PA4 LINE L1 4690 6150 -5 205 244 0 0 chr12 58093167 58093208 -85693247 - MIR SINE MIR -10 252 212 368 328 30 8 chr12 58093699 58093833 -85692622 + MIR SINE MIR 4 140 -122 473 47 16 0 chr12 58093967 58094031 -85692424 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 187 356 119 0 chr12 58094031 58094141 -85692314 - L2 LINE L2 -7 3306 3180 243 0 0 0 chr12 58095127 58095154 -85691301 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3876 27 0 0 chr12 58095154 58095604 -85690851 - L1PA3 LINE L1 -5 6150 5701 23 0 0 0 chr12 58097687 58097710 -85688745 + AT_rich Low_complexity Low_complexity 1 23 0 1713 189 0 17 chr12 58097785 58098076 -85688379 - AluJo SINE Alu -26 286 1 386 211 164 0 chr12 58098076 58098180 -85688275 + MER112 DNA MER1_type 127 247 -13 3007 124 12 27 chr12 58099240 58099709 -85686746 - L1PA13 LINE L1 0 6163 5688 2072 138 36 30 chr12 58099709 58100070 -85686385 + THE1B LTR MaLR 2 364 0 11617 96 7 1 chr12 58100070 58101640 -85684815 + THE1B-int LTR MaLR 1 1580 0 1909 158 42 33 chr12 58101640 58102001 -85684454 + THE1B LTR MaLR 1 364 0 3007 124 12 27 chr12 58102001 58102046 -85684409 - L1PA13 LINE L1 -472 5691 5655 2038 176 54 10 chr12 58102046 58102456 -85683999 - MSTA LTR MaLR 0 428 1 5661 191 86 3 chr12 58102456 58103619 -85682836 - MSTA-int LTR MaLR 0 1651 392 1231 170 61 43 chr12 58103630 58103860 -85682595 + AluSq SINE Alu 23 256 -57 1587 133 3 40 chr12 58103860 58104104 -85682351 - L1M2 LINE L1 -536 5764 5531 1909 153 7 0 chr12 58104104 58104392 -85682063 - AluSx SINE Alu -22 290 1 1587 133 3 40 chr12 58104392 58104447 -85682008 - L1M2 LINE L1 -769 5531 5476 13849 35 1 12 chr12 58104464 58106986 -85679469 - L1PA3 LINE L1 -5 6150 3654 24552 66 26 21 chr12 58106998 58110623 -85675832 - L1PA3 LINE L1 -2501 3645 1 981 189 59 3 chr12 58110623 58110930 -85675525 - L1 LINE L1 -2887 4678 4355 1177 240 36 29 chr12 58110935 58111625 -85674830 - L1 LINE L1 -4523 2973 2269 1702 229 51 12 chr12 58111694 58112293 -85674162 - L1 LINE L1 -6405 1084 9 286 89 0 0 chr12 58112386 58112431 -85674024 + MADE1 DNA Mariner 36 80 0 882 244 75 0 chr12 58112475 58112782 -85673673 - L1PA15-16 LINE L1 -4573 2275 1852 * 4331 172 36 8 chr12 58112778 58113737 -85672718 + L1PB4 LINE L1 5156 6144 -12 246 280 10 0 chr12 58113774 58113874 -85672581 + T-rich Low_complexity Low_complexity 3 103 0 430 315 68 89 chr12 58113996 58114603 -85671852 - L1MEd LINE L1 -4862 1257 664 4386 138 5 41 chr12 58114775 58115244 -85671211 + L1PB3 LINE L1 5357 5787 -367 2140 148 0 0 chr12 58115244 58115555 -85670900 - AluSx SINE Alu -1 311 1 4386 138 5 41 chr12 58115555 58115889 -85670566 + L1PB3 LINE L1 5787 6131 -23 1376 146 0 15 chr12 58115889 58115972 -85670483 - AluSx SINE Alu -110 202 119 522 125 0 0 chr12 58115972 58116052 -85670403 + MADE1 DNA Mariner 1 80 0 1376 146 0 15 chr12 58116052 58116173 -85670282 - AluSx SINE Alu -193 119 1 37 39 0 0 chr12 58116174 58116225 -85670230 + AT_rich Low_complexity Low_complexity 1 51 0 495 323 106 0 chr12 58117080 58117315 -85669140 - MIR SINE MIR -1 261 2 25 65 0 0 chr12 58118687 58118733 -85667722 + AT_rich Low_complexity Low_complexity 1 46 0 1356 252 35 8 chr12 58121752 58122121 -85664334 + LTR52-int LTR ERVL 1570 1948 -1608 3938 261 73 54 chr12 58122123 58122322 -85664133 + MSTC-int LTR MaLR 24 218 -1433 6950 64 11 0 chr12 58122322 58123290 -85663165 + L1PA6 LINE L1 5176 6153 -1 3938 261 73 54 chr12 58123290 58124684 -85661771 + MSTC-int LTR MaLR 218 1646 -5 1683 182 45 25 chr12 58124689 58125046 -85661409 + MSTC LTR MaLR 1 364 -64 729 64 0 0 chr12 58125052 58125146 -85661309 + L1P LINE L1 5 98 -6048 * 8356 106 4 14 chr12 58125144 58126403 -85660052 + L1P LINE L1 623 1869 -4277 433 227 45 0 chr12 58126520 58126608 -85659847 - MSTC LTR MaLR -333 95 4 216 309 36 48 chr12 58126761 58126909 -85659546 - L2 LINE L2 0 3313 3166 862 206 12 0 chr12 58126909 58127069 -85659386 + FAM SINE Alu 1 162 -13 216 309 36 48 chr12 58127069 58127085 -85659370 - L2 LINE L2 -147 3166 3151 337 384 9 0 chr12 58127121 58127233 -85659222 - L2 LINE L2 -2 3311 3199 404 309 278 21 chr12 58127391 58127776 -85658679 - L2 LINE L2 -340 2974 2491 2351 75 0 0 chr12 58127788 58128090 -85658365 + AluSc SINE Alu 1 302 0 505 272 5 54 chr12 58128122 58128306 -85658149 + L1MC5 LINE L1 7739 7913 -48 1442 316 28 31 chr12 58128341 58128635 -85657820 - L2 LINE L2 -833 2481 2188 1163 130 21 5 chr12 58128635 58128827 -85657628 + L1MC1 LINE L1 6139 6333 0 1442 316 28 31 chr12 58128827 58129143 -85657312 - L2 LINE L2 -1126 2188 1873 207 0 0 0 chr12 58129148 58129171 -85657284 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1587 168 10 41 chr12 58129173 58129464 -85656991 - AluJo SINE Alu -30 282 1 1526 181 31 14 chr12 58129565 58129852 -85656603 + AluJo SINE Alu 1 292 -20 250 298 71 21 chr12 58129872 58130013 -85656442 - L2 LINE L2 -1562 1752 1605 1860 141 28 66 chr12 58130017 58130444 -85656011 + L1MB8 LINE L1 5689 6099 -79 2130 106 47 16 chr12 58130456 58131113 -85655342 - Tigger3(Golem) DNA MER2_type -1 3028 2278 529 206 9 0 chr12 58131104 58131211 -85655244 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 302 242 15 0 chr12 58131213 58131279 -85655176 - Tigger2 DNA MER2_type -10 2708 2642 1490 77 10 0 chr12 58131282 58131477 -85654978 + L1PA5 LINE L1 5958 6154 0 2373 77 0 10 chr12 58131502 58131800 -85654655 + AluY SINE Alu 1 295 -16 962 195 18 0 chr12 58131800 58131969 -85654486 + AluJb SINE Alu 134 305 -7 2483 96 0 0 chr12 58132044 58132356 -85654099 + AluSx SINE Alu 1 312 0 1546 183 21 3 chr12 58132405 58132694 -85653761 + L1MC4 LINE L1 6711 7004 -1038 1903 223 44 29 chr12 58132694 58133009 -85653446 + L1ME1 LINE L1 5630 5939 -227 1918 111 0 0 chr12 58133009 58133253 -85653202 + AluSx SINE Alu 38 281 -31 180 0 0 0 chr12 58133253 58133273 -85653182 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 1903 223 44 29 chr12 58133273 58133364 -85653091 + L1ME1 LINE L1 5939 6027 -139 2325 145 106 5 chr12 58133364 58133751 -85652704 + MSTB LTR MaLR 1 426 0 1903 223 44 29 chr12 58133751 58133867 -85652588 + L1ME1 LINE L1 6027 6162 -4 366 265 0 0 chr12 58133871 58133962 -85652493 + L1MC4 LINE L1 6915 7080 -803 358 203 0 0 chr12 58133965 58134034 -85652421 + L1MC4a LINE L1 5529 5597 -573 251 255 39 29 chr12 58134034 58134136 -85652319 + L1MC4a LINE L1 5856 5958 -1850 1702 162 16 26 chr12 58134385 58134693 -85651762 + AluJb SINE Alu 1 305 -7 210 71 0 0 chr12 58134693 58134721 -85651734 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 205 324 96 22 chr12 58134739 58134875 -85651580 + L2 LINE L2 2829 2974 -339 1729 134 7 53 chr12 58136132 58136415 -85650040 + AluJo SINE Alu 39 308 -4 255 271 12 163 chr12 58136531 58136789 -85649666 - L2 LINE L2 -839 2475 2257 2151 98 7 3 chr12 58136819 58137126 -85649329 + AluSx SINE Alu 1 308 0 206 133 0 22 chr12 58139754 58139799 -85646656 + (CA)n Simple_repeat Simple_repeat 1 44 0 289 346 84 58 chr12 58140519 58140770 -85645685 + L2 LINE L2 2917 3160 -112 2354 99 0 34 chr12 58140770 58141093 -85645362 - AluSx SINE Alu 0 312 1 2342 96 7 0 chr12 58141093 58141394 -85645061 - AluSx SINE Alu -8 304 1 289 346 84 58 chr12 58141394 58141488 -85644967 + L2 LINE L2 3159 3272 0 2288 98 7 3 chr12 58142047 58142342 -85644113 + AluSx SINE Alu 1 296 -16 657 215 131 63 chr12 58142832 58143023 -85643432 - MIR SINE MIR -12 250 47 7850 17 3 0 chr12 58143357 58144735 -85641720 + L1PA3 LINE L1 4771 6152 -3 207 88 0 0 chr12 58144739 58144773 -85641682 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2264 131 35 48 chr12 58144787 58145222 -85641233 + L1MA8 LINE L1 5863 6291 0 2177 107 10 13 chr12 58145738 58146038 -85640417 + AluSx SINE Alu 2 300 -12 904 129 29 0 chr12 58146965 58147104 -85639351 - FLAM_C SINE Alu 0 143 1 577 224 103 18 chr12 58148738 58148903 -85637552 + MIR SINE MIR 35 213 -49 455 218 102 44 chr12 58149505 58149711 -85636744 + MLT1J1 LTR MaLR 102 319 -127 288 277 43 11 chr12 58151805 58151899 -85634556 - MIR SINE MIR -138 124 28 219 173 0 0 chr12 58153735 58153787 -85632668 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 211 200 0 0 chr12 58154864 58154899 -85631556 + (CA)n Simple_repeat Simple_repeat 1 35 0 310 330 79 90 chr12 58155088 58155188 -85631267 + L2 LINE L2 2898 2998 -274 1512 139 0 9 chr12 58155188 58155403 -85631052 - AluJb SINE Alu -15 297 85 310 330 79 90 chr12 58155403 58155608 -85630847 + L2 LINE L2 2998 3201 -71 2038 112 0 48 chr12 58155608 58155787 -85630668 - AluSq SINE Alu -1 312 153 2387 42 42 3 chr12 58155787 58156072 -85630383 - AluY SINE Alu -15 296 1 2038 112 0 48 chr12 58156072 58156206 -85630249 - AluSq SINE Alu -160 153 14 310 330 79 90 chr12 58156206 58156278 -85630177 + L2 LINE L2 3201 3272 0 211 217 22 0 chr12 58156393 58156439 -85630016 + (CA)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr12 58157022 58157052 -85629403 + (CA)n Simple_repeat Simple_repeat 2 31 0 324 210 48 0 chr12 58158036 58158098 -85628357 - L2 LINE L2 -7 3306 3242 242 286 0 18 chr12 58158106 58158162 -85628293 - L2 LINE L2 -17 3296 3242 483 287 47 7 chr12 58158165 58158315 -85628140 - MIR SINE MIR -6 256 101 516 213 43 28 chr12 58159263 58159404 -85627051 - MIR SINE MIR 0 262 120 201 74 0 0 chr12 58159810 58159837 -85626618 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 207 214 0 0 chr12 58160413 58160455 -85626000 + (CTA)n Simple_repeat Simple_repeat 2 43 0 236 306 6 19 chr12 58161421 58161578 -85624877 + C-rich Low_complexity Low_complexity 6 160 0 266 318 0 46 chr12 58162083 58162234 -85624221 + GA-rich Low_complexity Low_complexity 4 147 0 2233 109 13 0 chr12 58163683 58163985 -85622470 + AluSx SINE Alu 1 306 -6 1836 125 54 4 chr12 58164099 58164378 -85622077 + AluJo SINE Alu 1 293 -19 1681 215 66 40 chr12 58164385 58164809 -85621646 + L1MD2 LINE L1 5906 6340 -19 1958 118 7 0 chr12 58164826 58165097 -85621358 + AluSx SINE Alu 25 297 -15 447 121 0 0 chr12 58165192 58165258 -85621197 + Alu SINE Alu 242 307 -5 26 74 0 0 chr12 58165286 58165340 -85621115 + AT_rich Low_complexity Low_complexity 1 54 0 225 291 86 17 chr12 58166226 58166343 -85620112 + L3b LINE CR1 1244 1368 -215 661 251 105 0 chr12 58167037 58167228 -85619227 + MIR SINE MIR 2 212 -50 215 293 0 0 chr12 58167580 58167636 -85618819 - MIR3 SINE MIR 0 208 153 287 194 0 16 chr12 58167636 58167698 -85618757 + MER5B DNA MER1_type 1 61 -117 2318 88 0 33 chr12 58167700 58167836 -85618619 + AluSx SINE Alu 1 140 -172 2714 7 3 20 chr12 58167836 58168141 -85618314 + AluYa5 SINE Alu 1 300 -11 2318 88 0 33 chr12 58168141 58168310 -85618145 + AluSx SINE Alu 140 296 -16 229 213 0 33 chr12 58168314 58168375 -85618080 + MIR SINE MIR 185 243 -19 183 171 86 0 chr12 58168346 58168381 -85618074 + L2 LINE L2 3219 3256 -16 * 26 0 0 0 chr12 58168394 58168420 -85618035 + AT_rich Low_complexity Low_complexity 1 26 0 1470 72 11 0 chr12 58169046 58169226 -85617229 + AluSp SINE Alu 1 182 -131 622 119 0 0 chr12 58169228 58169312 -85617143 + AluSg/x SINE Alu 214 297 -12 2005 128 3 3 chr12 58169326 58169608 -85616847 - AluSx SINE Alu -26 286 5 2107 131 3 7 chr12 58170415 58170721 -85615734 - AluSg1 SINE Alu -3 306 2 456 343 60 0 chr12 58170722 58170888 -85615567 - MIR SINE MIR -71 191 16 2232 74 13 32 chr12 58171212 58171521 -85614934 + AluSp SINE Alu 1 303 -10 2195 94 20 10 chr12 58171524 58171823 -85614632 + AluSc SINE Alu 1 302 -7 1610 185 17 11 chr12 58172326 58172613 -85613842 - AluJo SINE Alu -23 289 1 1704 134 10 89 chr12 58173604 58173918 -85612537 - AluJb SINE Alu -23 289 1 1806 165 0 14 chr12 58174231 58174522 -85611933 + AluJb SINE Alu 1 287 -25 2676 45 3 0 chr12 58174534 58174843 -85611612 + AluY SINE Alu 1 310 -1 201 213 43 0 chr12 58174849 58174896 -85611559 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 886 111 35 7 chr12 58175136 58175280 -85611175 - AluY SINE Alu -163 148 1 222 149 0 0 chr12 58175335 58175372 -85611083 + (A)n Simple_repeat Simple_repeat 1 40 -7 1804 129 118 4 chr12 58175372 58175652 -85610803 + AluSx SINE Alu 1 312 0 222 149 0 0 chr12 58175652 58175661 -85610794 + (A)n Simple_repeat Simple_repeat 39 47 0 865 125 0 140 chr12 58176148 58176256 -85610199 + MER2 DNA MER2_type 1 70 -275 1292 191 88 7 chr12 58176256 58176539 -85609916 + AluJo SINE Alu 1 306 -6 865 125 0 140 chr12 58176539 58176630 -85609825 + MER2 DNA MER2_type 70 172 -173 273 135 0 0 chr12 58176685 58176722 -85609733 + MER2 DNA MER2_type 306 342 -3 2328 104 0 0 chr12 58177458 58177767 -85608688 - AluY SINE Alu -2 309 1 2029 147 0 7 chr12 58178227 58178534 -85607921 - AluSx SINE Alu -1 311 7 2127 129 13 3 chr12 58178783 58179092 -85607363 + AluSx SINE Alu 1 312 0 682 150 235 0 chr12 58179808 58179961 -85606494 - MER44D DNA MER2_type 0 609 421 1844 160 0 3 chr12 58179968 58180261 -85606194 + AluJb SINE Alu 11 302 -10 2164 133 7 10 chr12 58180264 58180608 -85605847 + AluSg SINE Alu 1 343 0 1261 120 0 0 chr12 58180609 58180776 -85605679 + AluSp SINE Alu 129 295 -18 1255 145 35 5 chr12 58180776 58181078 -85605377 - MER44D DNA MER2_type -187 418 1 1966 111 11 0 chr12 58181383 58181654 -85604801 + AluSq SINE Alu 37 310 -3 1363 191 75 24 chr12 58181804 58182097 -85604358 - AluJo SINE Alu -4 308 1 1199 167 17 50 chr12 58182670 58182909 -85603546 - AluJo SINE Alu -9 303 73 2083 136 3 0 chr12 58182924 58183219 -85603236 + AluJb SINE Alu 3 298 -14 869 144 8 0 chr12 58183904 58184036 -85602419 + FLAM_C SINE Alu 1 133 0 279 174 0 0 chr12 58184779 58184825 -85601630 + MER3 DNA MER1_type 42 87 -122 276 174 0 0 chr12 58184786 58184832 -85601623 - Charlie5 DNA MER1_type -2404 208 163 * 360 245 130 5 chr12 58185056 58185263 -85601192 + MER5C DNA MER1_type 2 323 -1 281 244 137 71 chr12 58185511 58185571 -85600884 - MIR SINE MIR -6 256 201 896 146 6 76 chr12 58185571 58185597 -85600858 - AluJo/FRAM SINE Alu -7 295 269 1625 175 52 3 chr12 58185597 58185883 -85600572 + AluSx SINE Alu 1 300 -12 896 146 6 76 chr12 58185883 58186027 -85600428 - AluJo/FRAM SINE Alu -33 269 137 281 244 137 71 chr12 58186027 58186134 -85600321 - MIR SINE MIR -61 201 78 297 0 0 0 chr12 58186525 58186558 -85599897 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2118 99 3 7 chr12 58186558 58186837 -85599618 - AluSg SINE Alu -32 278 1 1847 156 6 16 chr12 58187037 58187352 -85599103 + AluJo SINE Alu 1 312 0 2158 106 4 0 chr12 58187537 58187811 -85598644 - AluSx SINE Alu -17 295 21 2543 74 0 3 chr12 58187832 58188144 -85598311 - AluY SINE Alu 0 311 1 1979 153 6 10 chr12 58188610 58188923 -85597532 + AluJb SINE Alu 1 312 0 2586 59 3 0 chr12 58189757 58190061 -85596394 + AluSq SINE Alu 1 305 -8 22 0 0 0 chr12 58190261 58190283 -85596172 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr12 58190696 58190726 -85595729 + AT_rich Low_complexity Low_complexity 1 30 0 2925 168 69 22 chr12 58190831 58191452 -85595003 + L1MB8 LINE L1 5529 6178 0 2341 115 0 0 chr12 58191507 58191819 -85594636 + AluSx SINE Alu 1 312 0 781 116 27 0 chr12 58192090 58192202 -85594253 + FLAM_A SINE Alu 18 132 -10 1922 132 3 45 chr12 58192467 58192778 -85593677 - AluSx SINE Alu -14 298 1 1665 186 3 14 chr12 58192783 58193079 -85593376 - AluJb SINE Alu -19 293 1 1890 134 7 0 chr12 58193112 58193381 -85593074 + AluSx SINE Alu 18 288 -24 498 203 151 38 chr12 58193403 58193518 -85592937 - L1ME4a LINE L1 -11 6110 6009 588 152 98 197 chr12 58193518 58193782 -85592673 + MER8 DNA MER2_type 1 238 -1 498 203 151 38 chr12 58193782 58193878 -85592577 - L1ME4a LINE L1 -112 6009 5875 446 295 68 5 chr12 58193927 58194097 -85592358 - L1ME4a LINE L1 -352 5769 5609 234 0 0 0 chr12 58195053 58195079 -85591376 + (A)n Simple_repeat Simple_repeat 1 26 0 1867 149 0 0 chr12 58195079 58195355 -85591100 - AluSx SINE Alu -36 276 1 1394 177 50 11 chr12 58196503 58196780 -85589675 - AluJo SINE Alu -19 293 6 493 159 0 112 chr12 58196786 58196893 -85589562 - MER2 DNA MER2_type -250 95 1 253 288 24 12 chr12 58196957 58197127 -85589328 + (CCG)n Simple_repeat Simple_repeat 1 172 0 * 414 267 0 0 chr12 58197083 58197214 -85589241 + C-rich Low_complexity Low_complexity 1 131 0 444 341 42 14 chr12 58197421 58197590 -85588865 + L1ME LINE L1 5042 5224 -922 1737 175 7 0 chr12 58197590 58197882 -85588573 - AluJo SINE Alu -18 294 1 444 341 42 14 chr12 58197882 58197996 -85588459 + L1ME LINE L1 5224 5333 -813 329 337 29 23 chr12 58198084 58198256 -85588199 + L1ME LINE L1 5482 5654 -512 296 178 20 40 chr12 58198296 58198346 -85588109 + (TATAA)n Simple_repeat Simple_repeat 2 51 -49 1794 153 81 6 chr12 58198346 58198680 -85587775 + MER46B DNA MER2_type 1 234 -2 296 178 20 40 chr12 58198680 58198730 -85587725 + (TATAA)n Simple_repeat Simple_repeat 51 100 0 2219 119 0 0 chr12 58199165 58199459 -85586996 + AluSx SINE Alu 1 294 -18 420 283 154 78 chr12 58200162 58200661 -85585794 + L3 LINE CR1 515 1051 -526 2445 72 7 0 chr12 58200945 58201251 -85585204 + AluY SINE Alu 1 308 -3 968 121 0 0 chr12 58201393 58201525 -85584930 + AluSq/x SINE Alu 1 132 -180 2055 136 13 7 chr12 58201528 58201837 -85584618 + AluSx SINE Alu 1 311 -1 1546 177 61 27 chr12 58202132 58202426 -85584029 - AluJb SINE Alu -8 304 1 1926 115 16 36 chr12 58202544 58202848 -85583607 - AluSx SINE Alu -14 298 1 241 292 0 14 chr12 58202947 58203019 -85583436 + Charlie4 DNA MER1_type 1885 1955 -6 26 30 0 0 chr12 58203851 58203884 -85582571 + AT_rich Low_complexity Low_complexity 1 33 0 978 181 18 0 chr12 58207123 58207294 -85579161 + FAM SINE Alu 1 174 -1 2219 94 7 29 chr12 58208651 58208958 -85577497 + AluSx SINE Alu 1 300 -12 230 336 101 5 chr12 58210697 58210786 -85575669 + MIR SINE MIR 2 81 -181 2184 113 3 0 chr12 58210786 58211078 -85575377 - AluSx SINE Alu -9 303 11 230 336 101 5 chr12 58211078 58211196 -85575259 + MIR SINE MIR 81 229 -33 507 240 0 10 chr12 58211209 58211305 -85575150 - MER81 DNA DNA -13 101 7 1863 164 7 7 chr12 58211933 58212237 -85574218 + AluJo SINE Alu 1 304 -8 2572 60 0 3 chr12 58212627 58212928 -85573527 - AluY SINE Alu -11 300 1 935 149 34 4 chr12 58213356 58213564 -85572891 - AluJb SINE Alu -6 306 1 1204 379 3 60 chr12 58213603 58213920 -85572535 + AluY SINE Alu 1 299 -12 1869 173 0 13 chr12 58213955 58214261 -85572194 + AluJo SINE Alu 1 302 -10 1940 134 41 3 chr12 58214604 58214894 -85571561 - AluJb SINE Alu -6 306 6 1084 198 0 0 chr12 58214905 58215082 -85571373 - AluJb SINE Alu -7 305 129 322 137 0 0 chr12 58215083 58215134 -85571321 - L1MB8 LINE L1 0 6178 6128 2016 146 3 3 chr12 58215151 58215446 -85571009 - AluJb SINE Alu -15 297 3 2626 138 69 34 chr12 58215446 58215805 -85570650 - MER4E LTR ERV1 -136 643 259 2261 110 0 10 chr12 58215805 58216115 -85570340 - AluSq SINE Alu -6 307 1 2626 138 69 34 chr12 58216115 58216262 -85570193 - MER4E LTR ERV1 -520 259 119 1874 148 13 20 chr12 58216459 58216762 -85569693 - AluJb SINE Alu -11 301 1 1928 107 45 36 chr12 58216924 58217232 -85569223 + AluSx SINE Alu 1 311 -1 790 179 73 0 chr12 58217236 58217387 -85569068 + AluJo SINE Alu 2 163 -149 1833 98 0 35 chr12 58218449 58218704 -85567751 + AluY SINE Alu 2 247 -64 2687 10 0 0 chr12 58218823 58219111 -85567344 - AluYa5 SINE Alu -23 288 1 2273 69 4 4 chr12 58219171 58219448 -85567007 - AluY SINE Alu -10 301 25 4177 146 25 72 chr12 58219480 58220419 -85566036 - LTR49-int LTR ERV1 -2736 3595 2702 2315 129 0 0 chr12 58220459 58220769 -85565686 + AluSx SINE Alu 3 312 0 811 207 13 18 chr12 58220769 58221081 -85565374 - LTR49-int LTR ERV1 -3623 2708 758 2197 121 0 0 chr12 58221088 58221409 -85565046 - AluSx SINE Alu 0 321 1 1374 168 87 45 chr12 58222126 58222412 -85564043 - AluJb SINE Alu -9 303 6 495 293 85 0 chr12 58223291 58223455 -85563000 - MIR SINE MIR -14 248 71 2342 101 3 10 chr12 58225804 58226111 -85560344 + AluSx SINE Alu 2 306 -6 1696 168 46 0 chr12 58226889 58227151 -85559304 + AluJb SINE Alu 1 274 -38 250 94 0 57 chr12 58227274 58227327 -85559128 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 438 20 0 0 chr12 58228357 58228408 -85558047 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 918 159 0 14 chr12 58228420 58228565 -85557890 - FLAM_C SINE Alu 0 143 1 194 326 115 48 chr12 58230273 58230535 -85555920 - L2 LINE L2 -2 3270 2980 2245 118 3 3 chr12 58230535 58230832 -85555623 + AluSq SINE Alu 1 297 -16 194 326 115 48 chr12 58230832 58230900 -85555555 - L2 LINE L2 -292 2980 2918 191 264 32 88 chr12 58230898 58231023 -85555432 + L2 LINE L2 3153 3270 -2 * 2191 117 3 0 chr12 58231114 58231395 -85555060 + AluSg SINE Alu 1 285 -25 192 77 0 0 chr12 58231395 58231421 -85555034 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 620 78 10 39 chr12 58231438 58231541 -85554914 + L1PB1 LINE L1 6051 6150 -1 2372 75 0 0 chr12 58231557 58231835 -85554620 + AluSx SINE Alu 3 280 -32 210 37 0 0 chr12 58231845 58231872 -85554583 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 314 370 74 5 chr12 58231881 58232084 -85554371 - MIR SINE MIR -44 218 2 336 191 78 57 chr12 58232609 58232750 -85553705 - L1ME4a LINE L1 0 6121 5978 217 278 0 28 chr12 58232844 58232916 -85553539 + G-rich Low_complexity Low_complexity 2 71 0 1296 167 33 76 chr12 58233002 58233278 -85553177 - AluJb SINE Alu -48 264 1 231 114 0 0 chr12 58233300 58233335 -85553120 + (TA)n Simple_repeat Simple_repeat 1 35 0 401 209 112 53 chr12 58233484 58233532 -85552923 - MIR SINE MIR -45 163 119 2307 110 0 0 chr12 58233532 58233831 -85552624 - AluSx SINE Alu -13 299 1 401 209 112 53 chr12 58233831 58233953 -85552502 - MIR SINE MIR -89 119 6 2274 120 0 13 chr12 58235236 58235552 -85550903 - AluSx SINE Alu 0 312 1 1516 53 79 0 chr12 58235952 58236142 -85550313 - AluSp SINE Alu -6 307 103 252 122 0 0 chr12 58236286 58236327 -85550128 + (T)n Simple_repeat Simple_repeat 1 41 0 400 217 28 91 chr12 58238102 58238245 -85548210 - L1ME3 LINE L1 0 6162 6029 1661 183 14 14 chr12 58238283 58238415 -85548040 + AluJb SINE Alu 1 132 -180 1669 104 0 0 chr12 58238415 58238627 -85547828 + AluSg/x SINE Alu 85 296 -16 1661 183 14 14 chr12 58238627 58238783 -85547672 + AluJb SINE Alu 131 289 -23 3808 169 29 46 chr12 58238829 58239006 -85547449 + L1MC1 LINE L1 4616 4794 -1539 1881 147 25 3 chr12 58239006 58239292 -85547163 + AluJb SINE Alu 1 292 -20 3808 169 29 46 chr12 58239292 58240427 -85546028 + L1MC1 LINE L1 4794 5893 -440 2293 102 0 16 chr12 58240427 58240731 -85545724 + AluSx SINE Alu 1 299 -13 938 214 6 0 chr12 58240731 58240909 -85545546 + AluSg/x SINE Alu 134 312 0 581 63 0 144 chr12 58240911 58241022 -85545433 + L1MC1 LINE L1 5879 5973 -360 1945 160 3 7 chr12 58241025 58241158 -85545297 + AluJb SINE Alu 1 133 -179 2514 86 0 0 chr12 58241158 58241461 -85544994 + AluSg SINE Alu 1 303 -7 1945 160 3 7 chr12 58241461 58241615 -85544840 + AluJb SINE Alu 133 287 -25 2416 36 0 4 chr12 58241626 58241905 -85544550 + AluY SINE Alu 1 278 -33 953 63 0 8 chr12 58241905 58242031 -85544424 + L1PA5 LINE L1 6022 6146 -8 32 0 0 0 chr12 58242031 58242063 -85544392 + AT_rich Low_complexity Low_complexity 1 32 0 412 221 28 88 chr12 58242097 58242278 -85544177 + HAL1 LINE L1 90 259 -2248 1922 117 4 4 chr12 58242292 58242549 -85543906 - AluSq SINE Alu -22 291 35 1388 81 38 10 chr12 58242671 58242880 -85543575 - MLT2A1 LTR ERVL -229 215 1 23 0 0 0 chr12 58242971 58242994 -85543461 + AT_rich Low_complexity Low_complexity 1 23 0 2534 79 3 0 chr12 58243590 58243895 -85542560 + AluSc SINE Alu 1 306 -3 1465 197 69 24 chr12 58243948 58244238 -85542217 - AluJo SINE Alu -9 303 1 2287 116 0 0 chr12 58244250 58244552 -85541903 - AluSx SINE Alu -10 302 1 1299 133 78 0 chr12 58244552 58244770 -85541685 - L1PA16 LINE L1 -127 6039 5805 2251 93 3 13 chr12 58244798 58245098 -85541357 - AluSq SINE Alu -16 297 1 1931 155 30 10 chr12 58245108 58245404 -85541051 - AluJb SINE Alu -10 302 1 2314 86 3 10 chr12 58245413 58245717 -85540738 - AluSp SINE Alu -11 302 1 2319 97 0 0 chr12 58245886 58246175 -85540280 - AluSx SINE Alu -18 294 6 1103 127 57 0 chr12 58246656 58246813 -85539642 - AluSg/x SINE Alu -12 300 135 291 316 65 62 chr12 58246861 58246991 -85539464 + L2 LINE L2 1862 1990 -1324 2193 126 0 0 chr12 58246991 58247301 -85539154 - AluY SINE Alu -1 310 1 291 316 65 62 chr12 58247301 58247556 -85538899 + L2 LINE L2 1990 2248 -1066 628 259 0 7 chr12 58248262 58248401 -85538054 + L2 LINE L2 3161 3298 -15 249 357 167 30 chr12 58248901 58249206 -85537249 - L2 LINE L2 0 3272 2926 2359 103 3 0 chr12 58249241 58249552 -85536903 - AluSq SINE Alu -1 312 1 1145 89 18 47 chr12 58249633 58249802 -85536653 - AluSp SINE Alu -17 296 133 2081 149 0 10 chr12 58249860 58250168 -85536287 - AluSx SINE Alu -7 305 1 894 26 17 9 chr12 58250249 58250365 -85536090 + MER4E LTR ERV1 1 117 -649 2037 141 14 0 chr12 58250555 58250845 -85535610 - AluSx SINE Alu -18 294 1 1470 80 38 5 chr12 58250845 58251057 -85535398 + MLT2A1 LTR ERVL 226 444 0 1544 200 10 27 chr12 58251062 58251362 -85535093 - AluJb SINE Alu -17 295 1 2403 96 0 0 chr12 58251482 58251784 -85534671 - AluSx SINE Alu -10 302 1 4187 139 42 93 chr12 58252358 58252402 -85534053 - MER39B-int LTR ERV1 -4464 1482 1437 2302 111 7 0 chr12 58252402 58252709 -85533746 - AluSx SINE Alu -3 309 1 4187 139 42 93 chr12 58252709 58253248 -85533207 - MER39B-int LTR ERV1 -4509 1437 872 1882 133 0 0 chr12 58253248 58253511 -85532944 + AluSx SINE Alu 2 264 -48 270 0 0 0 chr12 58253518 58253548 -85532907 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4187 139 42 93 chr12 58253548 58254237 -85532218 - MER39B-int LTR ERV1 -5080 866 1 388 159 0 0 chr12 58254239 58254302 -85532153 - MER39B LTR ERV1 0 653 591 1150 146 0 0 chr12 58254302 58254466 -85531989 + U1 snRNA snRNA 1 164 -1 2370 65 11 0 chr12 58254518 58254820 -85531635 - AluSx SINE Alu 0 305 1 21 36 0 0 chr12 58254820 58254848 -85531607 + AT_rich Low_complexity Low_complexity 1 28 0 3125 136 40 4 chr12 58254857 58255386 -85531069 - LTR49 LTR ERV1 -47 548 1 514 255 42 71 chr12 58255387 58255626 -85530829 + HAL1 LINE L1 1705 1936 -571 3097 154 70 46 chr12 58255707 58256396 -85530059 + L1M4c LINE L1 3 707 -5677 1027 91 0 0 chr12 58256399 58256531 -85529924 + AluY SINE Alu 1 132 -179 2267 110 0 10 chr12 58256538 58256847 -85529608 + AluSg1 SINE Alu 1 306 -3 5342 133 42 46 chr12 58256853 58257841 -85528614 + L1M4c LINE L1 700 1684 -4700 2255 52 0 125 chr12 58257841 58258184 -85528271 + AluY SINE Alu 1 300 -11 5342 133 42 46 chr12 58258184 58258323 -85528132 + L1M4c LINE L1 1684 1822 -4562 2338 71 3 7 chr12 58258325 58258619 -85527836 + AluSg SINE Alu 3 295 -15 1196 129 29 0 chr12 58258619 58258789 -85527666 + AluSg/x SINE Alu 134 308 -4 2776 121 5 0 chr12 58258955 58259376 -85527079 + L1MC1 LINE L1 5471 5893 -440 2324 103 0 22 chr12 58259376 58259695 -85526760 + AluSx SINE Alu 1 312 0 544 260 27 20 chr12 58259722 58259872 -85526583 + LTR49-int LTR ERV1 2332 2482 -3849 2301 116 0 0 chr12 58259872 58260173 -85526282 + AluSx SINE Alu 1 301 -11 1663 92 16 56 chr12 58260173 58260412 -85526043 + L1M4c LINE L1 1815 2062 -4322 2148 128 0 25 chr12 58260412 58260548 -85525907 + AluSx SINE Alu 1 139 -173 2127 115 16 16 chr12 58260548 58260860 -85525595 + AluSx SINE Alu 1 312 0 2256 121 3 0 chr12 58260863 58261169 -85525286 + AluSx SINE Alu 1 307 -5 2148 128 0 25 chr12 58261169 58261348 -85525107 + AluSx SINE Alu 141 312 0 1663 92 16 56 chr12 58261348 58261412 -85525043 + L1M4c LINE L1 2062 2106 -4278 800 156 0 16 chr12 58261412 58261525 -85524930 + AluJo/FLAM SINE Alu 2 114 -198 2147 124 7 0 chr12 58261525 58261815 -85524640 + AluSg SINE Alu 2 293 -17 616 119 8 52 chr12 58261823 58261957 -85524498 + L1M4c LINE L1 2167 2294 -4090 419 98 0 0 chr12 58261960 58262021 -85524434 - LTR41 LTR ERVL -6 767 707 * 787 210 216 50 chr12 58262019 58262358 -85524097 - LTR41 LTR ERVL -244 529 68 2330 113 0 0 chr12 58262358 58262668 -85523787 - AluSg SINE Alu 0 310 1 787 210 216 50 chr12 58262668 58262742 -85523713 - LTR41 LTR ERVL -705 68 8 1421 276 64 35 chr12 58262742 58262902 -85523553 - L1ME LINE L1 -5359 711 557 415 0 0 0 chr12 58262912 58262958 -85523497 + (TTTA)n Simple_repeat Simple_repeat 3 132 0 2186 116 0 7 chr12 58262958 58263239 -85523216 - AluSc SINE Alu -28 281 1 1421 276 64 35 chr12 58263239 58263764 -85522691 - L1ME LINE L1 -5513 557 6 2209 91 0 0 chr12 58263980 58264276 -85522179 + AluSq SINE Alu 1 296 -17 2133 119 0 0 chr12 58264278 58264573 -85521882 + AluSx SINE Alu 1 295 -17 2112 166 107 0 chr12 58264740 58265125 -85521330 - MSTB LTR MaLR 0 426 1 985 194 101 136 chr12 58265149 58265545 -85520910 + MLT1D LTR MaLR 1 382 -123 2057 117 27 0 chr12 58265545 58265845 -85520610 - AluSq SINE Alu -5 308 1 908 118 0 96 chr12 58265845 58266023 -85520432 - FRAM SINE Alu -15 161 1 686 206 8 0 chr12 58266023 58266154 -85520301 + MLT1D LTR MaLR 372 503 -2 1652 183 0 10 chr12 58266565 58266871 -85519584 + AluJo SINE Alu 1 303 -9 2029 115 0 3 chr12 58267214 58267523 -85518932 + AluSq SINE Alu 1 308 0 864 110 117 7 chr12 58267523 58267668 -85518787 + AluSg/x SINE Alu 132 292 -20 310 273 129 5 chr12 58267742 58267829 -85518626 - L1ME LINE L1 -302 5819 5744 216 97 0 0 chr12 58267829 58267860 -85518595 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 310 273 129 5 chr12 58267860 58267966 -85518489 - L1ME LINE L1 -377 5744 5602 2083 146 31 76 chr12 58267995 58268047 -85518408 - L1MB4 LINE L1 0 6180 6127 1570 199 3 3 chr12 58268047 58268344 -85518111 - AluJo SINE Alu -15 297 1 2083 146 31 76 chr12 58268344 58268777 -85517678 - L1MB4 LINE L1 -53 6127 5717 230 276 69 0 chr12 58268812 58268870 -85517585 - L1MB4 LINE L1 -2256 5552 5491 1946 130 3 7 chr12 58268875 58269188 -85517267 - AluSx SINE Alu 0 312 1 488 272 32 37 chr12 58269383 58269600 -85516855 + L1MEc LINE L1 49 264 -6132 886 135 6 43 chr12 58269707 58269870 -85516585 - AluSg/x SINE Alu -44 266 110 3818 98 70 35 chr12 58269915 58269983 -85516472 + Tigger3(Golem) DNA MER2_type 2330 2394 -634 2108 101 0 10 chr12 58269983 58270303 -85516152 + AluSx SINE Alu 1 312 0 3818 98 70 35 chr12 58270303 58270439 -85516016 + Tigger3(Golem) DNA MER2_type 2394 2524 -504 2068 119 7 3 chr12 58270439 58270741 -85515714 + AluSx SINE Alu 5 307 -5 3818 98 70 35 chr12 58270741 58271211 -85515244 + Tigger3(Golem) DNA MER2_type 2524 3028 0 22 0 0 0 chr12 58271221 58271243 -85515212 + AT_rich Low_complexity Low_complexity 1 22 0 2250 83 0 3 chr12 58272193 58272483 -85513972 - AluSx SINE Alu -23 289 1 233 176 20 59 chr12 58272524 58272596 -85513859 - L2 LINE L2 -248 3065 2997 239 308 31 54 chr12 58272626 58272756 -85513699 + L2 LINE L2 2158 2284 -1030 348 267 0 40 chr12 58273343 58273444 -85513011 + L1M4 LINE L1 5240 5336 -810 263 350 75 0 chr12 58273812 58273892 -85512563 - L2 LINE L2 -46 3226 3141 1987 125 27 0 chr12 58273897 58274192 -85512263 + AluSp SINE Alu 1 303 -10 1692 141 10 35 chr12 58274215 58274528 -85511927 + AluSx SINE Alu 1 305 -7 2108 125 3 0 chr12 58274528 58274838 -85511617 + AluSq SINE Alu 1 312 -1 1178 82 13 0 chr12 58274842 58275000 -85511455 + AluSg/x SINE Alu 137 296 -16 1919 98 0 0 chr12 58275048 58275303 -85511152 + AluSx SINE Alu 38 292 -20 1445 134 0 5 chr12 58275303 58275520 -85510935 + AluSg/x SINE Alu 75 290 -22 284 161 16 0 chr12 58275520 58275582 -85510873 + (TA)n Simple_repeat Simple_repeat 1 63 0 226 204 0 82 chr12 58275582 58275680 -85510775 + L1MC4 LINE L1 6614 6703 -1339 468 290 67 50 chr12 58275681 58275749 -85510706 - L2 LINE L2 -217 3055 2990 703 165 47 16 chr12 58275749 58275876 -85510579 + FLAM_C SINE Alu 1 131 -2 468 290 67 50 chr12 58275876 58276104 -85510351 - L2 LINE L2 -282 2990 2755 2114 97 0 42 chr12 58276550 58276859 -85509596 + AluSq SINE Alu 1 296 -17 2158 86 17 3 chr12 58276871 58277172 -85509283 + AluSq SINE Alu 1 305 -8 2130 105 7 3 chr12 58277596 58277900 -85508555 + AluSx SINE Alu 1 305 -7 1763 147 27 14 chr12 58277908 58278201 -85508254 + AluSq SINE Alu 1 297 -16 24 0 0 0 chr12 58278315 58278339 -85508116 + AT_rich Low_complexity Low_complexity 1 24 0 1984 109 13 22 chr12 58279329 58279641 -85506814 - AluSx SINE Alu 0 312 4 1677 143 0 52 chr12 58279645 58279952 -85506503 - AluSx SINE Alu -21 291 1 2357 62 0 23 chr12 58280963 58281270 -85505185 + AluY SINE Alu 1 300 -11 1060 182 55 38 chr12 58281306 58281542 -85504913 + AluJo SINE Alu 72 311 -1 572 198 99 78 chr12 58281550 58281628 -85504827 + L1MEc LINE L1 1771 1846 -4550 2083 128 0 3 chr12 58281628 58281940 -85504515 + AluSx SINE Alu 1 311 -1 572 198 99 78 chr12 58281940 58282104 -85504351 + L1MEc LINE L1 1846 2018 -4378 2193 108 0 16 chr12 58282105 58282421 -85504034 + AluSq SINE Alu 1 311 -2 243 195 49 0 chr12 58282421 58282544 -85503911 + (TA)n Simple_repeat Simple_repeat 1 129 0 464 196 138 67 chr12 58282550 58282703 -85503752 + L1MEc LINE L1 2009 2184 -4212 1673 178 16 3 chr12 58282703 58283006 -85503449 + AluJb SINE Alu 5 311 -1 464 196 138 67 chr12 58283006 58283076 -85503379 + L1MEc LINE L1 2184 2248 -4148 313 248 18 9 chr12 58283076 58283185 -85503270 - L1M4 LINE L1 -797 5349 5240 1006 162 5 15 chr12 58283376 58283580 -85502875 + LOR1-int LTR ERV1 4167 4368 -3752 1251 94 0 0 chr12 58283580 58283751 -85502704 - AluY SINE Alu -9 302 132 207 0 0 0 chr12 58283760 58283783 -85502672 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1823 143 3 0 chr12 58283788 58284074 -85502381 - AluSx SINE Alu -25 287 1 180 0 0 0 chr12 58284224 58284244 -85502211 + (TA)n Simple_repeat Simple_repeat 2 21 0 1663 160 6 66 chr12 58284308 58284443 -85502012 + AluSx SINE Alu 1 143 -169 1701 116 3 104 chr12 58284443 58284778 -85501677 + AluSx SINE Alu 1 301 -11 2067 136 3 0 chr12 58284783 58285085 -85501370 + AluSx SINE Alu 1 303 -9 2097 105 3 10 chr12 58285088 58285402 -85501053 + AluSx SINE Alu 1 312 0 1663 160 6 66 chr12 58285402 58285588 -85500867 + AluSx SINE Alu 149 312 0 1955 126 3 3 chr12 58285701 58286010 -85500445 + AluSx SINE Alu 3 311 -1 195 269 124 88 chr12 58286334 58286527 -85499928 - L2 LINE L2 -224 3048 2849 280 216 0 0 chr12 58286557 58286608 -85499847 + L2 LINE L2 3263 3313 0 196 320 111 44 chr12 58286733 58286914 -85499541 - L2 LINE L2 -667 2647 2455 1015 168 0 26 chr12 58287048 58287238 -85499217 + AluJo SINE Alu 1 185 -127 3461 131 61 56 chr12 58287242 58287378 -85499077 - MER4E LTR ERV1 0 779 645 339 25 0 0 chr12 58287378 58287418 -85499037 + (TA)n Simple_repeat Simple_repeat 1 40 0 840 192 20 0 chr12 58287421 58287572 -85498883 - FRAM SINE Alu -12 154 1 2037 110 7 3 chr12 58287581 58287872 -85498583 - AluSx SINE Alu -18 294 3 3461 131 61 56 chr12 58287872 58288232 -85498223 - MER4E LTR ERV1 -142 637 263 2103 110 0 10 chr12 58288232 58288542 -85497913 - AluSq SINE Alu -6 307 1 3461 131 61 56 chr12 58288542 58288688 -85497767 - MER4E LTR ERV1 -516 263 119 1860 105 46 29 chr12 58288688 58288994 -85497461 + AluSx SINE Alu 1 311 -1 1406 174 36 30 chr12 58288997 58289301 -85497154 + AluJo SINE Alu 1 306 -6 727 174 8 0 chr12 58289304 58289425 -85497030 + FLAM_C SINE Alu 12 133 -10 1921 132 7 0 chr12 58289429 58289717 -85496738 + AluSx SINE Alu 1 290 -22 324 256 99 37 chr12 58289759 58290001 -85496454 + L1ME4a LINE L1 5677 5933 -188 185 314 81 57 chr12 58290058 58290182 -85496273 - L2 LINE L2 -577 2737 2611 335 289 167 28 chr12 58290301 58290481 -85495974 - MIR SINE MIR 0 262 58 22 35 0 0 chr12 58290562 58290591 -85495864 + AT_rich Low_complexity Low_complexity 1 29 0 3665 176 108 22 chr12 58290602 58290957 -85495498 + L1MC3 LINE L1 6677 7000 -785 1259 171 92 32 chr12 58290957 58291238 -85495217 - AluJo SINE Alu -4 298 1 3665 176 108 22 chr12 58291238 58291399 -85495056 + L1MC3 LINE L1 7000 7146 -639 1424 188 7 36 chr12 58291399 58291703 -85494752 + AluJb SINE Alu 1 295 -17 3665 176 108 22 chr12 58291703 58292016 -85494439 + L1MC3 LINE L1 7146 7579 -206 2212 80 7 0 chr12 58292016 58292304 -85494151 + AluSp SINE Alu 1 290 -23 212 128 21 21 chr12 58292308 58292355 -85494100 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1883 160 3 0 chr12 58292356 58292656 -85493799 + AluJo SINE Alu 1 301 -11 815 164 79 6 chr12 58292670 58292847 -85493608 + L1MC2 LINE L1 6142 6331 -13 2278 100 0 0 chr12 58292868 58293169 -85493286 + AluSg SINE Alu 1 301 -9 180 336 36 27 chr12 58293245 58293355 -85493100 - L2 LINE L2 -961 2353 2243 729 174 14 58 chr12 58293435 58293573 -85492882 + FLAM_C SINE Alu 1 132 -1 35 19 0 19 chr12 58293727 58293747 -85492708 + AT_rich Low_complexity Low_complexity 1 20 -32 2060 110 0 26 chr12 58293747 58294056 -85492399 - AluSx SINE Alu -10 302 2 35 19 0 19 chr12 58294056 58294088 -85492367 + AT_rich Low_complexity Low_complexity 20 52 0 2374 68 0 7 chr12 58297468 58297775 -85488680 + AluSg1 SINE Alu 1 305 -4 2003 100 38 3 chr12 58297942 58298232 -85488223 + AluSx SINE Alu 1 300 -12 2248 93 0 3 chr12 58299426 58299737 -85486718 - AluY SINE Alu -1 310 1 29 0 0 0 chr12 58301020 58301049 -85485406 + GC_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr12 58301767 58301810 -85484645 + (CA)n Simple_repeat Simple_repeat 2 44 0 348 184 194 29 chr12 58302264 58302367 -85484088 + MIR3 SINE MIR 85 204 -4 546 254 175 40 chr12 58302944 58303172 -85483283 - MIR SINE MIR -1 261 3 229 128 0 43 chr12 58303746 58303793 -85482662 - L2 LINE L2 0 3313 3269 414 264 83 21 chr12 58303940 58304133 -85482322 - L2 LINE L2 -339 2975 2771 317 306 72 9 chr12 58304101 58304212 -85482243 + MIR SINE MIR 39 156 -106 * 446 261 216 14 chr12 58304249 58304467 -85481988 - MIR SINE MIR 0 262 1 237 281 7 46 chr12 58305235 58305388 -85481067 + GA-rich Low_complexity Low_complexity 5 151 0 905 182 7 0 chr12 58306785 58306939 -85479516 + FRAM SINE Alu 1 155 -11 644 238 148 11 chr12 58308680 58308869 -85477586 + MIR SINE MIR 47 261 -1 208 225 0 0 chr12 58310176 58310216 -85476239 + G-rich Low_complexity Low_complexity 2 41 0 214 280 40 27 chr12 58311737 58311812 -85474643 + L2 LINE L2 2587 2662 -652 2115 130 0 0 chr12 58312343 58312644 -85473811 - AluSx SINE Alu -11 301 1 180 111 0 0 chr12 58312706 58312733 -85473722 + (T)n Simple_repeat Simple_repeat 1 27 0 1724 186 0 13 chr12 58313082 58313394 -85473061 + AluJo SINE Alu 1 308 -4 933 194 38 0 chr12 58313394 58313554 -85472901 + AluJb SINE Alu 135 300 -12 746 299 179 40 chr12 58313596 58313836 -85472619 - L2 LINE L2 -611 2703 2498 300 45 45 0 chr12 58313836 58313880 -85472575 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 2095 136 0 0 chr12 58313880 58314168 -85472287 - AluSx SINE Alu -1 331 1 746 299 179 40 chr12 58314168 58314473 -85471982 - L2 LINE L2 -815 2499 2080 2179 154 44 42 chr12 58314476 58314862 -85471593 - MLT1D LTR MaLR 0 505 116 2056 136 7 0 chr12 58314862 58315156 -85471299 - AluSx SINE Alu -16 296 1 2179 154 44 42 chr12 58315156 58315222 -85471233 - MLT1D LTR MaLR -389 116 52 1240 137 0 0 chr12 58315226 58315408 -85471047 - AluSp SINE Alu 0 313 132 242 29 29 0 chr12 58315408 58315443 -85471012 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2307 89 0 0 chr12 58315443 58315724 -85470731 - AluSx SINE Alu -30 282 2 387 185 0 0 chr12 58315725 58315790 -85470665 - MLT1D LTR MaLR -440 65 1 242 315 96 39 chr12 58315838 58316016 -85470439 - L2 LINE L2 -1323 1991 1804 2527 84 3 0 chr12 58316045 58316353 -85470102 - AluSp SINE Alu -4 309 1 674 285 72 19 chr12 58316530 58316849 -85469606 - L1MC4a LINE L1 -180 5941 5606 1903 113 7 7 chr12 58316849 58317123 -85469332 - AluSq SINE Alu -3 310 37 2128 143 3 0 chr12 58317274 58317575 -85468880 + AluSq SINE Alu 1 302 -11 270 136 0 0 chr12 58317575 58317619 -85468836 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1192 127 19 42 chr12 58317620 58317662 -85468793 - Tigger3(Golem) DNA MER2_type -248 2781 2740 2283 91 3 3 chr12 58317662 58317958 -85468497 + AluSg SINE Alu 1 296 -14 2246 96 0 0 chr12 58317960 58318289 -85468166 + AluSx SINE Alu 1 329 0 2331 105 0 3 chr12 58318290 58318596 -85467859 + AluSg SINE Alu 1 305 -5 1192 127 19 42 chr12 58318596 58318760 -85467695 - Tigger3(Golem) DNA MER2_type -289 2740 2574 2240 53 0 126 chr12 58318867 58319208 -85467247 + AluY SINE Alu 3 300 -11 2136 105 13 64 chr12 58319208 58319346 -85467109 + L1M4c LINE L1 1684 1828 -4556 2431 54 40 3 chr12 58319346 58319643 -85466812 + AluY SINE Alu 1 308 -3 2136 105 13 64 chr12 58319643 58319655 -85466800 + L1M4c LINE L1 1828 1839 -4545 2245 119 0 3 chr12 58319655 58319957 -85466498 + AluSx SINE Alu 1 301 -11 2136 105 13 64 chr12 58319957 58320196 -85466259 + L1M4c LINE L1 1839 2054 -4330 1119 88 0 0 chr12 58320196 58320332 -85466123 + AluJb SINE Alu 1 136 -176 1985 112 0 21 chr12 58320332 58320617 -85465838 + AluSx SINE Alu 1 279 -33 965 241 4 0 chr12 58320740 58320977 -85465478 + MLT2A2 LTR ERVL 4 241 -212 482 110 0 0 chr12 58321079 58321152 -85465303 + Alu SINE Alu 228 300 -10 1077 310 48 17 chr12 58321157 58321688 -85464767 + L2 LINE L2 2722 3274 -39 192 97 0 0 chr12 58321691 58321722 -85464733 + (CATG)n Simple_repeat Simple_repeat 1 31 0 1006 171 49 0 chr12 58321756 58321813 -85464642 - MLT1D LTR MaLR 0 505 452 2228 87 16 10 chr12 58321813 58322122 -85464333 - AluSq SINE Alu -2 311 1 1006 171 49 0 chr12 58322122 58322269 -85464186 - MLT1D LTR MaLR -53 452 291 392 329 36 32 chr12 58322427 58322704 -85463751 - L1ME LINE L1 -526 5595 5318 1673 159 31 59 chr12 58322706 58322876 -85463579 - AluJo SINE Alu 0 312 139 2344 75 10 3 chr12 58322876 58323171 -85463284 - AluSq SINE Alu -16 297 1 1673 159 31 59 chr12 58323171 58323185 -85463270 - AluJo SINE Alu -173 139 126 2485 65 0 3 chr12 58323185 58323505 -85462950 - AluY SINE Alu 0 319 1 1673 159 31 59 chr12 58323505 58323639 -85462816 - AluJo SINE Alu -186 126 1 560 181 121 0 chr12 58323639 58323755 -85462700 - FLAM_A SINE Alu -1 132 3 28 0 0 0 chr12 58323760 58323788 -85462667 + AT_rich Low_complexity Low_complexity 1 28 0 245 53 158 0 chr12 58323874 58323912 -85462543 + Alu SINE Alu 1 44 -89 440 155 60 12 chr12 58323913 58323997 -85462458 - L1PA16 LINE L1 -81 6085 5998 299 270 52 0 chr12 58323995 58324110 -85462345 - L1ME LINE L1 -1226 4920 4800 * 2314 108 7 0 chr12 58327522 58327819 -85458636 + AluSq SINE Alu 1 299 -14 335 244 184 60 chr12 58327908 58328076 -85458379 - MIR SINE MIR -66 196 8 344 279 76 0 chr12 58329260 58329339 -85457116 - MIR SINE MIR -62 146 62 215 307 27 13 chr12 58329357 58329432 -85457023 - MIR SINE MIR -10 252 177 182 228 88 35 chr12 58329925 58329982 -85456473 + L2 LINE L2 1136 1195 -2119 1763 160 8 0 chr12 58331687 58331955 -85454500 - AluJo SINE Alu -19 293 24 2351 106 0 0 chr12 58332181 58332483 -85453972 - AluSx SINE Alu -10 302 1 1293 124 23 1 chr12 58332483 58332700 -85453755 - L1PA16 LINE L1 -116 6038 5805 2222 97 3 13 chr12 58332728 58333028 -85453427 - AluSq SINE Alu -16 297 1 1883 158 30 14 chr12 58333038 58333335 -85453120 - AluJb SINE Alu -10 302 1 2314 86 3 10 chr12 58333344 58333648 -85452807 - AluSp SINE Alu -11 302 1 2308 100 0 0 chr12 58333817 58334106 -85452349 - AluSx SINE Alu -18 294 6 1103 127 57 0 chr12 58334585 58334742 -85451713 - AluSg/x SINE Alu -12 298 133 295 316 65 62 chr12 58334790 58334920 -85451535 + L2 LINE L2 1862 1990 -1324 2161 127 0 0 chr12 58334920 58335228 -85451227 - AluY SINE Alu -3 308 1 295 316 65 62 chr12 58335228 58335483 -85450972 + L2 LINE L2 1990 2248 -1066 628 259 0 7 chr12 58336189 58336328 -85450127 + L2 LINE L2 3161 3298 -15 249 357 167 30 chr12 58336828 58337133 -85449322 - L2 LINE L2 0 3272 2926 2492 82 0 13 chr12 58337168 58337484 -85448971 - AluSq SINE Alu -1 312 1 293 217 17 0 chr12 58337486 58337546 -85448909 - MER5A DNA MER1_type -115 74 14 624 255 153 9 chr12 58337548 58337764 -85448691 - L2 LINE L2 -2962 352 106 2045 133 10 3 chr12 58338150 58338452 -85448003 + AluSx SINE Alu 4 307 -5 444 303 118 24 chr12 58338545 58338756 -85447699 + MIR SINE MIR 2 232 -30 2377 94 3 0 chr12 58338756 58339063 -85447392 + AluSp SINE Alu 1 308 -5 1150 134 6 22 chr12 58339064 58339243 -85447212 + AluSp SINE Alu 134 309 -4 207 100 0 0 chr12 58339391 58339421 -85447034 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2538 68 0 7 chr12 58339573 58339880 -85446575 - AluY SINE Alu -6 305 1 262 311 19 10 chr12 58342639 58342742 -85443713 + CT-rich Low_complexity Low_complexity 4 107 0 183 129 0 0 chr12 58343516 58343547 -85442908 + (A)n Simple_repeat Simple_repeat 1 31 0 231 36 0 0 chr12 58343733 58343761 -85442694 + (TA)n Simple_repeat Simple_repeat 2 29 0 220 319 18 53 chr12 58344332 58344445 -85442010 - L2 LINE L2 -8 3264 3156 * 440 294 83 29 chr12 58344425 58344629 -85441826 - MIR SINE MIR -41 221 7 1309 184 116 4 chr12 58344903 58345170 -85441285 + AluJb SINE Alu 1 297 -15 2235 92 7 7 chr12 58345172 58345466 -85440989 + AluSc SINE Alu 2 295 -14 1037 122 0 0 chr12 58345468 58345607 -85440848 + AluSq/x SINE Alu 3 141 -171 2286 89 0 25 chr12 58345607 58345921 -85440534 + AluY SINE Alu 1 306 -5 1642 185 27 10 chr12 58345937 58346235 -85440220 - AluJo SINE Alu -7 305 3 429 335 66 11 chr12 58347034 58347216 -85439239 - MIR SINE MIR -51 211 20 2236 124 10 54 chr12 58347434 58347490 -85438965 + L1MA5 LINE L1 5909 5966 -334 1735 169 6 48 chr12 58347490 58347803 -85438652 + AluJb SINE Alu 1 300 -12 2463 77 3 0 chr12 58347803 58348099 -85438356 + AluSp SINE Alu 1 298 -15 2236 124 10 54 chr12 58348099 58348328 -85438127 + L1MA5 LINE L1 5965 6174 -126 2291 102 10 0 chr12 58348328 58348631 -85437824 + AluY SINE Alu 2 307 -4 2236 124 10 54 chr12 58348631 58348753 -85437702 + L1MA5 LINE L1 6174 6300 0 193 167 17 17 chr12 58349191 58349251 -85437204 + T-rich Low_complexity Low_complexity 1 60 0 2148 91 0 14 chr12 58351278 58351565 -85434890 - AluSq SINE Alu -6 307 25 2324 104 0 3 chr12 58351575 58351882 -85434573 - AluSg SINE Alu -4 306 1 416 125 0 0 chr12 58351886 58351958 -85434497 - LTR56 LTR ERV1 -365 80 9 876 155 0 0 chr12 58351972 58352101 -85434354 - FLAM_C SINE Alu 0 133 5 1199 112 32 52 chr12 58352107 58352357 -85434098 - LTR49-int LTR ERV1 -1787 4544 4300 606 152 26 11 chr12 58352357 58352494 -85433961 + L1M4 LINE L1 4629 4765 -1381 1149 184 35 105 chr12 58352934 58353083 -85433372 + AluJb SINE Alu 5 122 -190 185 0 40 0 chr12 58353083 58353108 -85433347 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1149 184 35 105 chr12 58353108 58353273 -85433182 + AluJb SINE Alu 122 297 -15 2146 108 18 0 chr12 58353430 58353732 -85432723 - AluSx SINE Alu 0 307 1 2095 151 0 0 chr12 58353862 58354173 -85432282 - AluSx SINE Alu -1 311 1 250 159 0 32 chr12 58354205 58354268 -85432187 - AluSp/q SINE Alu -2 301 247 258 290 39 70 chr12 58354678 58354877 -85431578 - L1MC5 LINE L1 -60 7982 7719 225 94 0 0 chr12 58355225 58355257 -85431198 + (TCCCC)n Simple_repeat Simple_repeat 5 36 0 1626 164 20 46 chr12 58355348 58355505 -85430950 - AluJo SINE Alu -16 296 149 2374 87 3 26 chr12 58355505 58355815 -85430640 - AluSp SINE Alu -10 303 1 1626 164 20 46 chr12 58355815 58355961 -85430494 - AluJo SINE Alu -163 149 1 2201 123 36 0 chr12 58355971 58356272 -85430183 - AluSx SINE Alu 0 312 1 2416 89 0 3 chr12 58356280 58356582 -85429873 - AluSg SINE Alu -9 301 1 277 345 9 62 chr12 58359962 58360075 -85426380 - L2 LINE L2 -86 3186 3080 865 109 8 0 chr12 58360474 58360593 -85425862 + AluJo SINE Alu 14 133 -179 2313 104 3 25 chr12 58361355 58361673 -85424782 + AluSx SINE Alu 1 311 -1 385 235 41 31 chr12 58361929 58362027 -85424428 - L2 LINE L2 -4 3309 3211 21 0 0 0 chr12 58363247 58363268 -85423187 + AT_rich Low_complexity Low_complexity 1 21 0 204 189 27 0 chr12 58364300 58364337 -85422118 - MIR SINE MIR -108 154 117 487 146 55 12 chr12 58364401 58364566 -85421889 + (CA)n Simple_repeat Simple_repeat 1 172 0 1061 156 52 0 chr12 58366815 58366988 -85419467 + AluJo SINE Alu 120 301 -11 213 39 0 0 chr12 58367142 58367168 -85419287 + (T)n Simple_repeat Simple_repeat 1 26 0 1995 57 0 0 chr12 58367178 58367405 -85419050 - AluSc SINE Alu -82 227 1 334 180 0 0 chr12 58368018 58368079 -85418376 - Alu SINE Alu 0 302 242 2184 108 0 0 chr12 58368343 58368630 -85417825 - AluSq SINE Alu -26 287 1 195 42 0 0 chr12 58368630 58368654 -85417801 + (TG)n Simple_repeat Simple_repeat 2 25 0 2435 66 0 16 chr12 58369573 58369877 -85416578 + AluY SINE Alu 1 299 -12 296 361 109 0 chr12 58369960 58370079 -85416376 - L2 LINE L2 -5 3267 3136 2201 131 0 0 chr12 58370130 58370428 -85416027 - AluSx SINE Alu -14 298 1 226 351 14 0 chr12 58370516 58370590 -85415865 - L2 LINE L2 -239 3033 2959 194 0 39 0 chr12 58371303 58371329 -85415126 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 230 200 19 29 chr12 58371522 58371627 -85414828 + CT-rich Low_complexity Low_complexity 4 107 0 2248 109 7 0 chr12 58372426 58372719 -85413736 - AluSx SINE Alu -17 295 1 297 260 10 0 chr12 58372719 58372790 -85413665 + MIR3 SINE MIR 96 168 -40 2183 128 7 0 chr12 58373159 58373456 -85412999 - AluSx SINE Alu -12 300 2 21 36 0 0 chr12 58373600 58373628 -85412827 + AT_rich Low_complexity Low_complexity 1 28 0 909 119 0 0 chr12 58373819 58373937 -85412518 - FLAM_C SINE Alu -13 130 13 1740 122 0 12 chr12 58374425 58374671 -85411784 - AluSg/x SINE Alu -3 307 65 22 35 0 0 chr12 58374704 58374733 -85411722 + AT_rich Low_complexity Low_complexity 1 29 0 1653 197 7 7 chr12 58375009 58375314 -85411141 - AluJo SINE Alu -7 305 1 913 117 48 28 chr12 58375395 58375540 -85410915 - AluSg/x SINE Alu -31 279 132 2224 94 3 20 chr12 58375540 58375839 -85410616 - AluSg SINE Alu -13 297 4 2044 115 28 11 chr12 58375841 58376127 -85410328 - AluSx SINE Alu -19 293 3 184 333 156 0 chr12 58376192 58376327 -85410128 - MIR SINE MIR -40 222 67 * 786 249 20 52 chr12 58376321 58376570 -85409885 - MIR SINE MIR -2 260 20 2151 118 20 7 chr12 58377518 58377823 -85408632 + AluSp SINE Alu 1 309 -4 214 200 0 73 chr12 58378243 58378298 -85408157 + C-rich Low_complexity Low_complexity 3 53 0 352 191 82 0 chr12 58378715 58378825 -85407630 + AluSc SINE Alu 179 297 -2 2211 112 30 74 chr12 58378868 58378910 -85407545 - Tigger3(Golem) DNA MER2_type -248 2781 2739 2241 98 3 3 chr12 58378910 58379206 -85407249 + AluSg SINE Alu 1 296 -14 2246 96 0 0 chr12 58379208 58379537 -85406918 + AluSx SINE Alu 1 329 0 2331 105 0 3 chr12 58379538 58379844 -85406611 + AluSg SINE Alu 1 305 -5 2211 112 30 74 chr12 58379844 58379999 -85406456 - Tigger3(Golem) DNA MER2_type -291 2738 2578 2292 82 0 3 chr12 58379999 58380321 -85406134 - AluSg SINE Alu 0 322 2 2211 112 30 74 chr12 58380321 58380377 -85406078 - Tigger3(Golem) DNA MER2_type -451 2578 2521 1602 181 3 31 chr12 58380377 58380572 -85405883 - AluJb SINE Alu 0 312 128 225 0 48 48 chr12 58380572 58380614 -85405841 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1602 181 3 31 chr12 58380614 58380738 -85405717 - AluJb SINE Alu -184 128 2 2211 112 30 74 chr12 58380738 58380928 -85405527 - Tigger3(Golem) DNA MER2_type -508 2521 2348 2488 82 0 0 chr12 58380928 58381221 -85405234 + AluSc SINE Alu 1 293 -16 2211 112 30 74 chr12 58381221 58381239 -85405216 - Tigger3(Golem) DNA MER2_type -681 2348 2331 2076 137 3 3 chr12 58381241 58381548 -85404907 + AluSx SINE Alu 1 307 -5 1645 167 3 42 chr12 58381559 58381865 -85404590 + AluJb SINE Alu 3 296 -16 2530 49 7 7 chr12 58381867 58382172 -85404283 + AluY SINE Alu 1 305 -6 387 0 0 0 chr12 58383234 58383277 -85403178 + (CA)n Simple_repeat Simple_repeat 2 44 0 284 48 24 0 chr12 58383633 58383675 -85402780 + (TG)n Simple_repeat Simple_repeat 1 43 0 245 98 24 0 chr12 58383675 58383716 -85402739 + (GA)n Simple_repeat Simple_repeat 2 43 0 2234 94 34 0 chr12 58385737 58386034 -85400421 - AluSc SINE Alu -2 307 1 1075 73 44 0 chr12 58386034 58386164 -85400291 - AluSq/x SINE Alu -176 136 1 681 241 15 92 chr12 58386168 58386430 -85400025 + MER102a DNA MER1_type 85 326 -4 1854 157 17 3 chr12 58386984 58387271 -85399184 + AluJb SINE Alu 1 291 -21 2247 109 0 16 chr12 58387946 58388077 -85398378 + AluSx SINE Alu 6 138 -174 2241 95 20 10 chr12 58388077 58388381 -85398074 + AluSp SINE Alu 1 307 -6 2247 109 0 16 chr12 58388381 58388561 -85397894 + AluSx SINE Alu 138 312 0 2073 128 10 7 chr12 58389275 58389572 -85396883 + AluSx SINE Alu 1 298 -14 2402 77 0 3 chr12 58389596 58389893 -85396562 + AluSg SINE Alu 1 296 -14 371 276 57 32 chr12 58389988 58390111 -85396344 - MIR3 SINE MIR -76 132 7 909 156 106 0 chr12 58390161 58390321 -85396134 - AluSg/x SINE Alu 0 310 134 183 42 0 0 chr12 58390452 58390476 -85395979 + (TG)n Simple_repeat Simple_repeat 1 24 0 304 87 8 19 chr12 58390793 58390855 -85395600 - Alu SINE Alu 0 302 252 2318 94 0 22 chr12 58390985 58391304 -85395151 - AluSx SINE Alu 0 312 1 2127 144 0 0 chr12 58391678 58391976 -85394479 + AluSx SINE Alu 1 298 -14 999 196 0 22 chr12 58392159 58392338 -85394117 - FAM SINE Alu 0 175 1 587 131 61 0 chr12 58392494 58392593 -85393862 + FLAM_C SINE Alu 27 131 -12 2458 73 7 0 chr12 58392601 58392901 -85393554 + AluSp SINE Alu 1 302 -11 240 191 103 29 chr12 58394369 58394437 -85392018 - MIR3 SINE MIR -24 184 112 219 36 0 0 chr12 58395119 58395147 -85391308 + (GA)n Simple_repeat Simple_repeat 1 28 0 2535 69 0 7 chr12 58396198 58396504 -85389951 + AluSq SINE Alu 1 304 -9 264 267 7 60 chr12 58397284 58397434 -85389021 + C-rich Low_complexity Low_complexity 3 144 0 1253 91 115 79 chr12 58397993 58398245 -85388210 - MER4A LTR ERV1 0 664 404 2631 52 3 0 chr12 58398245 58398552 -85387903 + AluSx SINE Alu 1 308 -4 2025 113 33 10 chr12 58398552 58398853 -85387602 + AluSq SINE Alu 1 309 -4 214 200 0 73 chr12 58399273 58399328 -85387127 + C-rich Low_complexity Low_complexity 3 53 0 2200 114 0 10 chr12 58399551 58399848 -85386607 - AluSx SINE Alu -18 294 1 621 139 30 0 chr12 58399963 58400064 -85386391 + AluSq/x SINE Alu 30 133 -179 2146 108 18 0 chr12 58400239 58400541 -85385914 - AluSx SINE Alu 0 307 1 2129 146 0 0 chr12 58400671 58400980 -85385475 - AluSx SINE Alu -3 309 1 2245 82 3 21 chr12 58400998 58401318 -85385137 - AluSq SINE Alu 0 315 1 2429 81 0 3 chr12 58401866 58402163 -85384292 + AluSc SINE Alu 1 296 -13 2488 75 0 0 chr12 58403385 58403679 -85382776 + AluSc SINE Alu 1 294 -15 197 108 27 0 chr12 58406468 58406505 -85379950 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2329 91 17 0 chr12 58406831 58407127 -85379328 - AluSg SINE Alu -9 301 1 353 244 89 49 chr12 58407385 58407508 -85378947 + MIR SINE MIR 20 147 -61 399 98 0 0 chr12 58407649 58407710 -85378745 + (TC)n Simple_repeat Simple_repeat 1 61 0 306 0 0 0 chr12 58407711 58407745 -85378710 + (TA)n Simple_repeat Simple_repeat 2 35 0 1054 108 7 0 chr12 58408228 58408376 -85378079 - FRAM SINE Alu -18 158 10 531 188 20 0 chr12 58409904 58410005 -85376450 + MER44D DNA MER2_type 1 373 -236 1761 149 11 14 chr12 58410005 58410286 -85376169 + AluJo SINE Alu 1 280 -32 1174 166 97 0 chr12 58410309 58410526 -85375929 + AluJb SINE Alu 1 238 -74 1746 164 0 48 chr12 58410548 58410858 -85375597 - AluJo SINE Alu -17 295 1 260 31 0 0 chr12 58410868 58410900 -85375555 + MER44D DNA MER2_type 363 394 -211 1181 151 151 17 chr12 58410900 58411139 -85375316 - AluJo SINE Alu -11 301 31 1635 77 3 4 chr12 58411139 58411381 -85375074 - pTR5 LTR ERV1 -2046 392 49 319 250 0 0 chr12 58411381 58411465 -85374990 - LTR30 LTR ERV1 -98 624 541 4507 127 71 61 chr12 58411466 58412453 -85374002 - pTR5 LTR ERV1 -417 2021 743 1055 154 20 59 chr12 58412458 58412513 -85373942 + MER44D DNA MER2_type 367 423 -2068 2230 79 19 35 chr12 58412513 58412829 -85373626 - AluY SINE Alu 0 311 1 1055 154 20 59 chr12 58412829 58412863 -85373592 + MER44D DNA MER2_type 423 457 -2034 2337 96 3 0 chr12 58412863 58413165 -85373290 - AluSx SINE Alu -8 304 2 1055 154 20 59 chr12 58413165 58413327 -85373128 + MER44D DNA MER2_type 457 609 0 255 299 15 67 chr12 58413367 58413501 -85372954 - MIR SINE MIR -120 142 16 1875 155 27 20 chr12 58414498 58414794 -85371661 + AluSx SINE Alu 1 298 -14 2475 97 3 0 chr12 58414996 58415306 -85371149 - AluSp SINE Alu -2 311 1 2230 100 3 3 chr12 58417413 58417702 -85368753 + AluSx SINE Alu 1 289 -23 518 110 22 22 chr12 58417893 58417984 -85368471 + MER4A LTR ERV1 2 92 -572 2837 16 0 0 chr12 58418861 58419166 -85367289 - AluY SINE Alu -6 305 1 223 239 0 0 chr12 58419900 58419946 -85366509 + CT-rich Low_complexity Low_complexity 2 47 0 918 224 72 5 chr12 58420437 58420660 -85365795 + MIR SINE MIR 15 252 -10 2392 88 0 3 chr12 58422009 58422304 -85364151 - AluSx SINE Alu -18 294 1 2308 113 3 0 chr12 58422475 58422776 -85363679 + AluSp SINE Alu 1 302 -11 234 0 0 0 chr12 58423480 58423506 -85362949 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2560 60 0 25 chr12 58424311 58424629 -85361826 + AluY SINE Alu 1 310 -1 1624 183 27 20 chr12 58424645 58424946 -85361509 - AluJo SINE Alu -7 305 3 429 335 66 11 chr12 58425745 58425927 -85360528 - MIR SINE MIR -51 211 20 2236 124 10 54 chr12 58426145 58426201 -85360254 + L1MA5 LINE L1 5909 5966 -334 1753 175 0 48 chr12 58426201 58426516 -85359939 + AluJb SINE Alu 1 300 -12 2463 77 3 0 chr12 58426516 58426812 -85359643 + AluSp SINE Alu 1 298 -15 2236 124 10 54 chr12 58426812 58427041 -85359414 + L1MA5 LINE L1 5965 6174 -126 2277 106 10 0 chr12 58427041 58427344 -85359111 + AluY SINE Alu 2 307 -4 2236 124 10 54 chr12 58427344 58427466 -85358989 + L1MA5 LINE L1 6174 6300 0 193 167 17 17 chr12 58427904 58427964 -85358491 + T-rich Low_complexity Low_complexity 1 60 0 2451 86 0 13 chr12 58429493 58429808 -85356647 + AluY SINE Alu 1 311 0 2484 69 3 7 chr12 58429961 58430265 -85356190 - AluY SINE Alu -6 305 3 262 311 19 10 chr12 58433322 58433425 -85353030 + CT-rich Low_complexity Low_complexity 4 107 0 183 129 0 0 chr12 58434199 58434230 -85352225 + (A)n Simple_repeat Simple_repeat 1 31 0 231 36 0 0 chr12 58434416 58434444 -85352011 + (TA)n Simple_repeat Simple_repeat 2 29 0 220 319 18 53 chr12 58435015 58435128 -85351327 - L2 LINE L2 -8 3264 3156 * 440 294 83 29 chr12 58435108 58435312 -85351143 - MIR SINE MIR -41 221 7 1309 184 116 4 chr12 58435586 58435853 -85350602 + AluJb SINE Alu 1 297 -15 2235 92 7 7 chr12 58435855 58436149 -85350306 + AluSc SINE Alu 2 295 -14 1090 101 0 0 chr12 58436151 58436290 -85350165 + AluSq/x SINE Alu 3 141 -171 2331 110 0 3 chr12 58436290 58436599 -85349856 + AluSc SINE Alu 1 308 -1 2247 118 14 0 chr12 58436860 58437157 -85349298 - AluSx SINE Alu -11 301 1 583 186 40 117 chr12 58437229 58437476 -85348979 - MER112 DNA MER1_type -31 229 2 1200 131 11 5 chr12 58437566 58437757 -85348698 - AluSq SINE Alu -2 311 120 423 167 33 11 chr12 58437757 58437847 -85348608 + MIR SINE MIR 138 229 -33 1230 211 98 11 chr12 58439925 58440190 -85346265 + AluJo SINE Alu 11 298 -14 2269 111 13 0 chr12 58440702 58441008 -85345447 - AluSx SINE Alu -2 310 1 1318 135 87 0 chr12 58441523 58441730 -85344725 - AluSx SINE Alu -87 225 1 2284 92 3 0 chr12 58442305 58442598 -85343857 - AluSx SINE Alu -18 294 1 289 217 17 0 chr12 58442600 58442660 -85343795 - MER5A DNA MER1_type -115 74 14 635 250 153 9 chr12 58442662 58442878 -85343577 - L2 LINE L2 -2962 352 106 2061 129 10 3 chr12 58443264 58443566 -85342889 + AluSx SINE Alu 4 307 -5 444 303 118 24 chr12 58443659 58443870 -85342585 + MIR SINE MIR 2 232 -30 2579 45 0 16 chr12 58443870 58444178 -85342277 + AluY SINE Alu 1 303 -8 240 117 39 78 chr12 58444464 58444584 -85341871 + AluSp/q SINE Alu 211 327 0 377 217 26 148 chr12 58444687 58444763 -85341692 + MLT-int LTR MaLR 1290 1374 -361 2475 73 0 19 chr12 58444763 58445077 -85341378 - AluY SINE Alu -1 310 3 377 217 26 148 chr12 58445077 58445133 -85341322 + MLT-int LTR MaLR 1374 1396 -339 2207 82 4 4 chr12 58445133 58445437 -85341018 - AluY SINE Alu 0 304 1 377 217 26 148 chr12 58445437 58445491 -85340964 + MLT-int LTR MaLR 1396 1455 -280 1827 127 23 0 chr12 58445508 58445768 -85340687 - AluSx SINE Alu -4 308 43 233 347 112 6 chr12 58445770 58445940 -85340515 + L2 LINE L2 803 990 -2324 562 204 30 45 chr12 58445993 58446125 -85340330 + FLAM_C SINE Alu 2 131 -2 1061 91 0 0 chr12 58446136 58446268 -85340187 + AluSq/x SINE Alu 1 132 -181 1710 106 26 0 chr12 58446373 58446600 -85339855 + AluSx SINE Alu 58 290 -22 216 67 0 0 chr12 58446600 58446630 -85339825 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 243 197 0 0 chr12 58446631 58446684 -85339771 - Alu SINE Alu -20 146 108 2045 120 35 0 chr12 58446710 58446994 -85339461 - AluSg SINE Alu -16 294 1 2401 89 3 19 chr12 58447145 58447460 -85338995 - AluSq SINE Alu -3 310 1 1711 154 95 0 chr12 58447727 58448000 -85338455 - AluSx SINE Alu -13 299 1 201 39 0 0 chr12 58448014 58448040 -85338415 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 914 186 0 0 chr12 58448040 58448185 -85338270 - FRAM SINE Alu -31 145 1 314 294 90 94 chr12 58448188 58448269 -85338186 + L3 LINE CR1 1154 1234 -343 803 136 0 57 chr12 58448269 58448409 -85338046 + FLAM_A SINE Alu 1 132 -1 1805 182 0 3 chr12 58448418 58448747 -85337708 + AluJo SINE Alu 1 312 0 314 294 90 94 chr12 58448747 58448856 -85337599 + L3 LINE CR1 1242 1353 -224 822 199 73 63 chr12 58449278 58449450 -85337005 - L1MC5 LINE L1 -504 7457 7279 2342 113 0 0 chr12 58449450 58449760 -85336695 - AluSg SINE Alu 0 310 1 822 199 73 63 chr12 58449760 58449873 -85336582 - L1MC5 LINE L1 -682 7279 7169 1182 160 87 9 chr12 58449874 58450093 -85336362 + AluJb SINE Alu 1 236 -76 24 0 0 29 chr12 58450098 58450115 -85336340 + AT_rich Low_complexity Low_complexity 1 17 -17 1863 72 30 0 chr12 58450115 58450351 -85336104 + AluSp SINE Alu 1 243 -70 24 0 0 29 chr12 58450351 58450368 -85336087 + AT_rich Low_complexity Low_complexity 17 34 0 403 193 50 0 chr12 58450426 58450545 -85335910 - L1 LINE L1 -2972 3174 3050 269 138 0 92 chr12 58450659 58450724 -85335731 + AluSp SINE Alu 242 300 -2 546 177 21 0 chr12 58451228 58451324 -85335131 - FRAM SINE Alu -78 98 1 2013 123 18 0 chr12 58451605 58451978 -85334477 + AluSx SINE Alu 1 378 0 180 0 0 0 chr12 58452882 58452902 -85333553 + (T)n Simple_repeat Simple_repeat 1 20 0 379 289 118 38 chr12 58459118 58459167 -85327288 + L3 LINE CR1 206 250 -1327 2285 87 21 0 chr12 58459167 58459456 -85326999 - AluSc SINE Alu -13 296 2 379 289 118 38 chr12 58459456 58459617 -85326838 + L3 LINE CR1 250 433 -1144 2024 220 89 11 chr12 58459629 58460189 -85326266 - MER90 LTR ERV1 -10 604 1 203 351 0 0 chr12 58460575 58460632 -85325823 + L3 LINE CR1 875 931 -646 263 228 18 0 chr12 58460659 58460716 -85325739 - L2 LINE L2 -5 3308 3251 234 281 44 36 chr12 58460763 58460926 -85325529 + L3 LINE CR1 1038 1284 -293 2174 75 41 17 chr12 58460978 58461273 -85325182 - AluY SINE Alu -9 302 1 677 232 155 5 chr12 58461275 58461469 -85324986 - MIR SINE MIR -8 254 32 2424 82 0 16 chr12 58461529 58461834 -85324621 - AluSx SINE Alu -12 300 1 2153 75 24 0 chr12 58465662 58465954 -85320501 - AluSg SINE Alu -11 299 1 225 276 49 49 chr12 58467552 58467675 -85318780 - L2 LINE L2 -14 3258 3136 2468 52 3 7 chr12 58468582 58468892 -85317563 + AluY SINE Alu 1 309 -2 1032 82 0 0 chr12 58470344 58470478 -85315977 - AluSg/x SINE Alu -15 294 161 691 201 117 84 chr12 58470876 58471052 -85315403 + AluSg SINE Alu 2 190 -120 2024 119 0 0 chr12 58471052 58471329 -85315126 + AluSq SINE Alu 1 277 -36 691 201 117 84 chr12 58471329 58471391 -85315064 + AluSg SINE Alu 190 248 -62 1005 196 70 0 chr12 58471391 58471425 -85315030 + AluJo SINE Alu 85 115 -197 186 43 0 0 chr12 58471425 58471448 -85315007 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1005 196 70 0 chr12 58471448 58471612 -85314843 + AluJo SINE Alu 115 297 -15 1793 118 45 28 chr12 58471612 58471901 -85314554 + AluSx SINE Alu 1 294 -18 2151 101 3 3 chr12 58471940 58472237 -85314218 - AluSx SINE Alu -15 297 1 2016 110 28 0 chr12 58472237 58472527 -85313928 - AluSx SINE Alu -14 298 1 1549 136 0 46 chr12 58472530 58472810 -85313645 - AluJo SINE Alu -17 295 29 1777 151 75 75 chr12 58472810 58473221 -85313234 + LTR47A LTR ERVL 42 452 0 403 218 13 0 chr12 58473264 58473342 -85313113 + MER21B LTR ERV1 334 412 -451 609 189 63 31 chr12 58473378 58473505 -85312950 + FLAM_C SINE Alu 1 131 -2 205 196 71 107 chr12 58473965 58474077 -85312378 + MIR SINE MIR 124 231 -31 * 730 278 29 33 chr12 58474036 58474089 -85312366 - MIR SINE MIR -5 257 205 1836 77 39 87 chr12 58474089 58474400 -85312055 - AluSx SINE Alu -16 296 1 730 278 29 33 chr12 58474400 58474591 -85311864 - MIR SINE MIR -57 205 14 275 48 0 24 chr12 58475706 58475748 -85310707 + (TG)n Simple_repeat Simple_repeat 1 41 0 2067 120 0 7 chr12 58479189 58479488 -85306967 + AluSx SINE Alu 1 297 -15 2151 112 0 0 chr12 58479488 58479783 -85306672 + AluSx SINE Alu 1 295 -17 989 90 0 22 chr12 58479794 58479928 -85306527 + FLAM_C SINE Alu 1 131 -2 1915 145 14 3 chr12 58479934 58480231 -85306224 + AluJb SINE Alu 1 300 -12 2026 75 41 20 chr12 58480278 58480572 -85305883 + AluSq SINE Alu 1 300 -13 225 242 15 0 chr12 58481287 58481353 -85305102 + C-rich Low_complexity Low_complexity 1 67 0 228 135 0 0 chr12 58485549 58485586 -85300869 + (A)n Simple_repeat Simple_repeat 1 37 0 1937 89 4 0 chr12 58487958 58488216 -85298239 - AluSc SINE Alu -14 295 37 193 384 23 23 chr12 58489067 58489244 -85297211 + L2 LINE L2 2877 3053 -219 2080 92 0 36 chr12 58489311 58489617 -85296838 - AluSg SINE Alu -15 295 1 779 118 38 5 chr12 58489618 58489804 -85296651 + Tigger3(Golem) DNA MER2_type 2347 2538 -491 1439 182 6 31 chr12 58489807 58489931 -85296524 + AluJb SINE Alu 2 128 -184 225 0 48 48 chr12 58489931 58489973 -85296482 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1439 182 6 31 chr12 58489973 58490166 -85296289 + AluJb SINE Alu 128 311 -1 507 170 75 0 chr12 58490519 58490613 -85295842 - L1MC1 LINE L1 -241 6092 5992 1109 100 96 72 chr12 58490617 58490866 -85295589 + L1MC1 LINE L1 6079 6333 0 2092 102 10 16 chr12 58490876 58491179 -85295276 + AluSq SINE Alu 1 301 -12 690 124 19 0 chr12 58491804 58491909 -85294546 - FLAM_C SINE Alu -33 110 4 1898 139 7 17 chr12 58491966 58492268 -85294187 - AluSq SINE Alu -14 299 1 2028 124 7 0 chr12 58492296 58492595 -85293860 - AluSg SINE Alu -9 301 1 1197 122 14 47 chr12 58492596 58492809 -85293646 - AluJb SINE Alu -12 300 95 1192 141 32 5 chr12 58492910 58493130 -85293325 - AluSg SINE Alu -84 226 1 1452 200 47 26 chr12 58493130 58493470 -85292985 + MLT1B-int LTR MaLR 1389 1735 0 1852 179 47 36 chr12 58493473 58493859 -85292596 + MLT1B LTR MaLR 1 390 0 235 294 43 0 chr12 58493860 58493952 -85292503 + L1MB5 LINE L1 4226 4321 -1825 226 86 0 0 chr12 58493955 58493990 -85292465 - LTR23 LTR ERV1 -2 435 401 1642 96 0 8 chr12 58493992 58494232 -85292223 - AluSp SINE Alu -2 311 74 584 90 13 167 chr12 58494388 58494448 -85292007 - LTR56 LTR ERV1 -305 140 72 2016 96 0 14 chr12 58494448 58494739 -85291716 - AluSx SINE Alu -1 311 25 584 90 13 167 chr12 58494739 58494757 -85291698 - LTR56 LTR ERV1 -373 72 53 2271 92 0 3 chr12 58494757 58495063 -85291392 - AluSg SINE Alu -5 305 1 584 90 13 167 chr12 58495063 58495139 -85291316 - LTR56 LTR ERV1 -392 53 9 861 163 0 0 chr12 58495157 58495286 -85291169 - FLAM_C SINE Alu 0 133 5 1020 111 37 51 chr12 58495292 58495508 -85290947 - LTR49-int LTR ERV1 -1787 4544 4332 2030 196 48 7 chr12 58495508 58495990 -85290465 + L1MB5 LINE L1 4603 5093 -1053 2132 120 0 3 chr12 58496048 58496348 -85290107 - AluSx SINE Alu -13 299 1 306 156 0 16 chr12 58496351 58496415 -85290040 + L1MB5 LINE L1 5089 5151 -995 499 212 10 10 chr12 58496415 58496514 -85289941 + AluJo SINE Alu 122 220 -92 1573 138 21 102 chr12 58496553 58496878 -85289577 + AluJo SINE Alu 1 299 -13 1820 173 19 48 chr12 58496878 58497008 -85289447 + L1MB5 LINE L1 5665 5797 -377 1707 159 0 24 chr12 58497008 58497133 -85289322 + AluJo SINE Alu 15 141 -171 2209 96 3 0 chr12 58497133 58497426 -85289029 + AluSc SINE Alu 1 294 -15 1707 159 0 24 chr12 58497426 58497596 -85288859 + AluJo SINE Alu 141 303 -9 1820 173 19 48 chr12 58497596 58497872 -85288583 + L1MB5 LINE L1 5797 6061 -113 1035 117 0 7 chr12 58497875 58498020 -85288435 + AluSq/x SINE Alu 7 150 -162 691 264 17 34 chr12 58498032 58498271 -85288184 + HERV16 LTR ERVL 2640 2874 -2122 1979 128 0 0 chr12 58498284 58498566 -85287889 - AluSx SINE Alu -30 282 1 998 152 12 6 chr12 58498566 58498730 -85287725 - AluJo SINE Alu -1 301 137 543 254 7 14 chr12 58498740 58498882 -85287573 + LTR16A LTR ERVL 297 437 -13 1965 145 0 3 chr12 58498952 58499262 -85287193 - AluSg SINE Alu -1 309 1 2066 138 0 6 chr12 58499516 58499828 -85286627 - AluSx SINE Alu -2 310 1 657 181 23 23 chr12 58499848 58499981 -85286474 - AluJo SINE Alu -178 134 2 498 132 0 13 chr12 58500003 58500079 -85286376 - AluS SINE Alu -235 76 2 329 296 41 0 chr12 58500082 58500180 -85286275 - L2 LINE L2 -1879 1435 1334 189 378 0 11 chr12 58500380 58500470 -85285985 - MIR SINE MIR -4 258 170 2296 88 0 0 chr12 58500470 58500766 -85285689 + AluSq SINE Alu 1 296 -17 9311 31 7 187 chr12 58500795 58502482 -85283973 - SVA Other Other 0 1386 4 691 201 117 84 chr12 58502742 58502918 -85283537 + AluSg SINE Alu 2 190 -120 2024 119 0 0 chr12 58502918 58503195 -85283260 + AluSq SINE Alu 1 277 -36 691 201 117 84 chr12 58503195 58503257 -85283198 + AluSg SINE Alu 190 248 -62 1005 196 70 0 chr12 58503257 58503291 -85283164 + AluJo SINE Alu 85 115 -197 186 43 0 0 chr12 58503291 58503314 -85283141 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1005 196 70 0 chr12 58503314 58503478 -85282977 + AluJo SINE Alu 115 297 -15 1828 118 45 24 chr12 58503478 58503766 -85282689 + AluSx SINE Alu 1 294 -18 2213 104 0 0 chr12 58503805 58504102 -85282353 - AluSx SINE Alu -15 297 1 455 153 194 10 chr12 58504130 58504228 -85282227 + FLAM_C SINE Alu 28 143 0 203 245 217 19 chr12 58504287 58504393 -85282062 + MIR SINE MIR 65 191 -71 183 80 0 0 chr12 58505789 58505814 -85280641 + (TC)n Simple_repeat Simple_repeat 1 25 0 250 245 0 0 chr12 58506756 58506809 -85279646 - L2 LINE L2 -11 3302 3250 205 195 24 0 chr12 58507910 58507951 -85278504 + (TG)n Simple_repeat Simple_repeat 1 42 0 1761 140 53 0 chr12 58510035 58510320 -85276135 + AluJb SINE Alu 1 300 -12 1845 96 4 15 chr12 58510329 58510589 -85275866 + AluSp SINE Alu 57 313 0 1967 131 37 0 chr12 58511169 58511290 -85275165 + AluSx SINE Alu 1 116 -196 195 69 0 0 chr12 58511290 58511319 -85275136 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1967 131 37 0 chr12 58511319 58511494 -85274961 + AluSx SINE Alu 116 308 -4 2490 37 17 0 chr12 58511496 58511793 -85274662 + AluY SINE Alu 3 304 -7 1849 146 20 3 chr12 58512566 58512861 -85273594 + AluJo SINE Alu 1 300 -12 255 302 90 63 chr12 58514669 58514825 -85271630 - L3 LINE CR1 -3 1574 1409 1802 130 58 14 chr12 58514825 58515101 -85271354 - AluJo SINE Alu -2 310 23 255 302 90 63 chr12 58515101 58515166 -85271289 - L3 LINE CR1 -168 1409 1347 2146 89 10 24 chr12 58515167 58515458 -85270997 + AluSc SINE Alu 1 287 -22 1292 220 122 42 chr12 58515458 58515502 -85270953 - L1MC4 LINE L1 -100 7942 7903 189 0 0 0 chr12 58515502 58515523 -85270932 + (CA)n Simple_repeat Simple_repeat 2 22 0 1292 220 122 42 chr12 58515523 58515905 -85270550 - L1MC4 LINE L1 -139 7903 7482 1050 169 30 0 chr12 58515905 58516071 -85270384 - AluSg/x SINE Alu -12 298 128 420 244 33 11 chr12 58516083 58516173 -85270282 - L1MC4 LINE L1 -1337 6705 6614 781 71 10 0 chr12 58516178 58516276 -85270179 - AluSp/q SINE Alu -17 296 198 842 144 0 0 chr12 58516277 58516395 -85270060 - AluJb SINE Alu -186 126 9 1561 191 292 21 chr12 58516405 58516696 -85269759 - L1MC4a LINE L1 -416 7392 7181 828 186 17 85 chr12 58516696 58516873 -85269582 + FRAM SINE Alu 1 165 -1 2490 90 0 6 chr12 58516873 58517184 -85269271 + AluSg SINE Alu 1 309 -1 1561 191 292 21 chr12 58517184 58517467 -85268988 - L1MC4a LINE L1 -626 7182 6661 2420 87 3 0 chr12 58519433 58519732 -85266723 + AluSp SINE Alu 1 300 -13 567 324 24 19 chr12 58520755 58520978 -85265477 + MIR SINE MIR 23 244 -18 2029 99 16 120 chr12 58522084 58522458 -85263997 + MER1B DNA MER1_type 3 337 0 2459 65 0 20 chr12 58522885 58523191 -85263264 + AluY SINE Alu 1 300 -11 2278 115 10 13 chr12 58523702 58524016 -85262439 - AluSq SINE Alu 0 313 1 2124 99 25 3 chr12 58524069 58524353 -85262102 - AluSg SINE Alu -20 290 1 309 349 41 24 chr12 58524530 58524699 -85261756 - L2 LINE L2 -168 3104 2933 1815 123 0 8 chr12 58524744 58525004 -85261451 + AluSx SINE Alu 45 302 -10 183 196 22 22 chr12 58525231 58525277 -85261178 + L2 LINE L2 2247 2292 -1022 289 299 13 84 chr12 58527416 58527504 -85258951 - L2 LINE L2 -4 3309 3235 2305 93 0 10 chr12 58527504 58527805 -85258650 - AluSx SINE Alu -14 298 1 289 299 13 84 chr12 58527805 58527870 -85258585 - L2 LINE L2 -78 3235 3167 2246 92 27 3 chr12 58527987 58528281 -85258174 - AluSq SINE Alu -12 301 1 2345 107 0 0 chr12 58529042 58529342 -85257113 + AluSx SINE Alu 1 300 -12 2294 105 10 0 chr12 58529342 58529647 -85256808 + AluSq SINE Alu 1 308 -5 353 261 61 67 chr12 58531233 58531370 -85255085 - MIR SINE MIR -2 260 123 1097 172 108 94 chr12 58531370 58531667 -85254788 + AluJo SINE Alu 2 302 0 353 261 61 67 chr12 58531667 58531694 -85254761 - MIR SINE MIR -139 123 97 256 213 62 0 chr12 58533242 58533322 -85253133 + (CTCG)n Simple_repeat Simple_repeat 1 85 0 1913 179 7 0 chr12 58536429 58536731 -85249724 + AluJb SINE Alu 1 304 -8 868 128 8 0 chr12 58536807 58536932 -85249523 + FLAM_C SINE Alu 9 134 -9 280 337 41 0 chr12 58536932 58537030 -85249425 + MIR SINE MIR 47 148 -114 1685 110 38 24 chr12 58537134 58537426 -85249029 + MER47A DNA MER2_type 71 366 0 2447 85 0 0 chr12 58537529 58537824 -85248631 + AluSc SINE Alu 2 296 -13 2474 74 0 29 chr12 58538021 58538332 -85248123 + AluSq SINE Alu 2 303 -10 2293 107 0 3 chr12 58538759 58539057 -85247398 + AluSx SINE Alu 1 297 -15 388 188 12 24 chr12 58540305 58540390 -85246065 - Tigger5 DNA MER2_type 0 2323 2240 22 0 0 0 chr12 58540390 58540412 -85246043 + AT_rich Low_complexity Low_complexity 1 22 0 328 195 13 39 chr12 58540420 58540497 -85245958 - AluJ/FLAM SINE Alu -217 85 11 2324 85 0 3 chr12 58543816 58544110 -85242345 + AluY SINE Alu 1 293 -18 1087 0 0 0 chr12 58544114 58544232 -85242223 + AluYa5/8 SINE Alu 194 311 0 1195 162 166 26 chr12 58544499 58544764 -85241691 + AluJo SINE Alu 1 302 0 248 153 102 0 chr12 58545055 58545114 -85241341 + MLT1L LTR MaLR 1 65 -550 2072 139 19 7 chr12 58545341 58545650 -85240805 - AluSq SINE Alu 0 313 1 2262 110 10 0 chr12 58545659 58545959 -85240496 - AluSx SINE Alu -9 303 1 617 215 68 12 chr12 58545959 58546122 -85240333 - AluSp SINE Alu -13 300 129 792 159 31 37 chr12 58546226 58546342 -85240113 + Tigger3(Golem) DNA MER2_type 2621 2736 -292 2301 111 0 3 chr12 58546342 58546649 -85239806 - AluSg SINE Alu -4 306 1 387 0 0 0 chr12 58546650 58546693 -85239762 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2174 103 4 0 chr12 58546693 58546974 -85239481 - AluSx SINE Alu -30 282 1 792 159 31 37 chr12 58546974 58547017 -85239438 + Tigger3(Golem) DNA MER2_type 2734 2782 -246 216 0 0 0 chr12 58547037 58547061 -85239394 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 1440 157 0 59 chr12 58547075 58547380 -85239075 - AluSx SINE Alu -25 287 1 318 239 11 68 chr12 58547610 58547786 -85238669 + AluSq SINE Alu 121 286 -17 567 207 8 33 chr12 58547818 58547939 -85238516 - FLAM_C SINE Alu -23 120 3 528 145 86 34 chr12 58548069 58548186 -85238269 - L2 LINE L2 -3 3310 3188 202 125 0 50 chr12 58548238 58548278 -85238177 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr12 58548327 58548349 -85238106 + (CA)n Simple_repeat Simple_repeat 2 23 0 432 0 0 0 chr12 58548390 58548438 -85238017 + (CA)n Simple_repeat Simple_repeat 2 49 0 1041 179 10 15 chr12 58548807 58549003 -85237452 - AluSg/x SINE Alu -3 309 115 2342 88 7 0 chr12 58549343 58549638 -85236817 - AluSp SINE Alu -16 297 1 2564 64 0 0 chr12 58549698 58549996 -85236459 - AluY SINE Alu -13 298 1 254 261 0 14 chr12 58550166 58550235 -85236220 - HAL1b LINE L1 -450 898 831 400 317 111 31 chr12 58550440 58550793 -85235662 + L2 LINE L2 2292 2759 -555 2244 114 10 0 chr12 58550793 58551099 -85235356 + AluSx SINE Alu 1 309 -3 400 317 111 31 chr12 58551099 58551187 -85235268 + L2 LINE L2 2759 2839 -475 2188 119 3 3 chr12 58551293 58551596 -85234859 + AluSx SINE Alu 5 307 -5 1997 93 85 4 chr12 58551603 58551873 -85234582 + AluSx SINE Alu 1 292 -20 200 176 0 0 chr12 58552133 58552167 -85234288 + (CGG)n Simple_repeat Simple_repeat 3 36 0 218 348 0 0 chr12 58552187 58552279 -85234176 + CT-rich Low_complexity Low_complexity 2 93 0 836 177 0 0 chr12 58552864 58552994 -85233461 - FLAM_A SINE Alu -3 130 1 1940 138 47 14 chr12 58553010 58553306 -85233149 - AluJb SINE Alu -6 306 1 2337 93 0 19 chr12 58553316 58553628 -85232827 - AluSx SINE Alu -6 306 1 327 187 44 87 chr12 58553980 58554072 -85232383 + AluS SINE Alu 5 70 -233 1580 124 5 5 chr12 58555240 58555458 -85230997 - AluJo SINE Alu -81 231 14 274 299 112 19 chr12 58556314 58556421 -85230034 + MIR SINE MIR 31 147 -115 210 326 96 54 chr12 58557034 58557242 -85229213 + L2 LINE L2 2127 2354 -960 1629 174 0 8 chr12 58557242 58557501 -85228954 - AluJb SINE Alu -55 257 1 210 326 96 54 chr12 58557501 58557605 -85228850 + L2 LINE L2 2354 2452 -862 2245 106 3 0 chr12 58558107 58558400 -85228055 - AluSp SINE Alu -19 294 1 432 275 246 19 chr12 58558500 58558707 -85227748 + MIR SINE MIR 8 261 -1 713 283 122 0 chr12 58558710 58558940 -85227515 + MIR SINE MIR 4 261 -1 2360 88 7 0 chr12 58558952 58559246 -85227209 - AluSq SINE Alu -17 296 1 1450 229 127 55 chr12 58559868 58560380 -85226075 - L2 LINE L2 -663 2651 2103 764 179 78 0 chr12 58560381 58560560 -85225895 + L1MB7 LINE L1 5715 5907 -277 3337 142 27 8 chr12 58560837 58561351 -85225104 + MER1A DNA MER1_type 4 527 0 336 371 13 0 chr12 58561379 58561530 -85224925 - L2 LINE L2 -542 2772 2620 942 208 42 9 chr12 58562831 58563043 -85223412 + MER20 DNA MER1_type 1 219 0 1063 221 71 4 chr12 58563292 58563545 -85222910 - L1MC3 LINE L1 -971 6814 6545 623 267 58 111 chr12 58563546 58564032 -85222423 + L1MC4a LINE L1 5576 6031 -90 199 200 60 0 chr12 58764447 58764497 -85021958 + L2 LINE L2 3022 3074 -239 2696 19 3 0 chr12 58764617 58764927 -85021528 - AluYa5 SINE Alu 0 311 1 2293 84 3 0 chr12 58764937 58765235 -85021220 - AluSx SINE Alu -13 299 1 273 262 0 0 chr12 58765261 58765322 -85021133 + L2 LINE L2 3253 3313 0 181 247 78 108 chr12 58765544 58765710 -85020745 - MIR SINE MIR 0 262 102 1900 123 18 0 chr12 58765739 58766023 -85020432 - AluSp SINE Alu -24 289 1 674 167 0 0 chr12 58766203 58766334 -85020121 + AluSg/x SINE Alu 181 311 0 2094 122 0 28 chr12 58767794 58768115 -85018340 - AluSx SINE Alu 0 312 1 1911 94 11 4 chr12 58769058 58769334 -85017121 + AluSq SINE Alu 22 299 -14 23 0 0 0 chr12 58769336 58769359 -85017096 + AT_rich Low_complexity Low_complexity 1 23 0 252 229 0 14 chr12 58770316 58770386 -85016069 + (CCG)n Simple_repeat Simple_repeat 1 69 0 2370 70 7 0 chr12 58773199 58773497 -85012958 + AluY SINE Alu 1 300 -11 596 108 0 0 chr12 58776928 58777011 -85009444 - Alu SINE Alu -8 303 221 215 305 12 49 chr12 58777060 58777142 -85009313 - L2 LINE L2 0 3272 3194 2146 122 0 3 chr12 58777142 58777445 -85009010 + AluSx SINE Alu 1 302 -10 2221 114 0 0 chr12 58777447 58777754 -85008701 + AluSx SINE Alu 1 307 -5 485 146 23 0 chr12 58777838 58777931 -85008524 + L1MC3 LINE L1 7659 7781 -27 823 149 0 40 chr12 58777938 58778086 -85008369 - FLAM_C SINE Alu -1 142 1 368 100 0 0 chr12 58778086 58778136 -85008319 + L1MC3 LINE L1 7730 7779 -6 1049 171 0 50 chr12 58778138 58778319 -85008136 + FAM SINE Alu 1 172 -3 608 152 95 19 chr12 58778336 58778441 -85008014 + FLAM_C SINE Alu 6 118 -25 35 0 0 0 chr12 58778441 58778476 -85007979 + AT_rich Low_complexity Low_complexity 1 35 0 1926 136 0 13 chr12 58778476 58778640 -85007815 - AluSx SINE Alu -15 297 137 2002 114 14 3 chr12 58778640 58778930 -85007525 - AluSx SINE Alu -19 293 1 1926 136 0 13 chr12 58778930 58779066 -85007389 - AluSx SINE Alu -175 137 1 39 38 0 0 chr12 58779075 58779128 -85007327 + AT_rich Low_complexity Low_complexity 1 53 0 557 251 72 0 chr12 58779154 58779321 -85007134 + MIR SINE MIR 84 262 0 180 361 107 12 chr12 58779353 58779522 -85006933 - L2 LINE L2 -177 3095 2911 1995 148 0 7 chr12 58781311 58781615 -85004840 - AluJb SINE Alu 0 312 11 2043 100 4 4 chr12 58781712 58782048 -85004407 - AluSg SINE Alu 0 336 1 2281 108 0 0 chr12 58782358 58782654 -85003801 + AluSx SINE Alu 1 296 -16 2256 86 0 7 chr12 58782682 58782984 -85003471 + AluSg SINE Alu 10 309 -1 2155 90 4 0 chr12 58792622 58792924 -84993531 - AluSg SINE Alu 0 303 1 1938 125 3 46 chr12 58793927 58794072 -84992383 + AluSx SINE Alu 1 128 -184 2306 83 3 3 chr12 58794072 58794372 -84992083 + AluSx SINE Alu 1 300 -12 1938 125 3 46 chr12 58794372 58794530 -84991925 + AluSx SINE Alu 128 291 -21 298 227 227 17 chr12 58794811 58794930 -84991525 - L3 LINE CR1 -10 1567 1424 1238 123 16 0 chr12 58795209 58795396 -84991059 - AluSg/x SINE Alu -2 310 121 2281 105 0 6 chr12 58795396 58795711 -84990744 - AluSq SINE Alu 0 313 1 2440 87 0 0 chr12 58796225 58796537 -84989918 + AluSx SINE Alu 1 312 0 1617 181 0 27 chr12 58796667 58796965 -84989490 + AluJb SINE Alu 9 298 -14 2380 90 3 0 chr12 58798919 58799231 -84987224 - AluSp SINE Alu 0 313 1 2097 120 0 3 chr12 58800000 58800299 -84986156 + AluSg SINE Alu 1 298 -12 30 0 0 0 chr12 58800461 58800491 -84985964 + AT_rich Low_complexity Low_complexity 1 30 0 1861 92 19 4 chr12 58800623 58800884 -84985571 + AluSx SINE Alu 43 307 -5 1387 85 0 0 chr12 58800884 58801060 -84985395 + AluSq SINE Alu 134 309 -4 1780 133 4 8 chr12 58801521 58801785 -84984670 + AluJb SINE Alu 6 268 -44 189 0 0 0 chr12 58801796 58801817 -84984638 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 912 106 21 0 chr12 58803667 58803808 -84982647 + BC200 scRNA scRNA 6 149 -51 1513 140 99 7 chr12 58804064 58804336 -84982119 - AluJb SINE Alu -15 297 1 2124 60 0 25 chr12 58804380 58804662 -84981793 - AluSg SINE Alu -35 275 1 1223 124 15 20 chr12 58806853 58807055 -84979400 - AluSg/x SINE Alu -1 311 111 228 135 0 0 chr12 58810520 58810557 -84975898 + (A)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr12 58811464 58811485 -84974970 + AT_rich Low_complexity Low_complexity 1 21 0 1953 89 4 0 chr12 58812929 58813187 -84973268 - AluSc SINE Alu -14 295 37 185 384 23 23 chr12 58814038 58814215 -84972240 + L2 LINE L2 2877 3053 -219 2111 88 0 36 chr12 58814282 58814588 -84971867 - AluSg SINE Alu -15 295 1 1859 154 0 49 chr12 58814718 58814919 -84971536 - AluJb SINE Alu -3 309 100 2049 101 14 7 chr12 58814919 58815215 -84971240 + AluSx SINE Alu 1 298 -14 1917 115 26 0 chr12 58815215 58815485 -84970970 + AluSp SINE Alu 7 316 0 249 0 0 30 chr12 58815485 58815518 -84970937 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1859 154 0 49 chr12 58815518 58815639 -84970816 - AluJb SINE Alu -210 102 1 471 197 60 8 chr12 58815767 58815884 -84970571 - L2 LINE L2 -3 3310 3188 202 125 0 50 chr12 58815936 58815976 -84970479 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr12 58816026 58816048 -84970407 + (CA)n Simple_repeat Simple_repeat 2 23 0 2247 127 0 3 chr12 58816217 58816525 -84969930 + AluSx SINE Alu 1 307 -5 2009 93 85 4 chr12 58816532 58816802 -84969653 + AluSx SINE Alu 1 292 -20 200 176 0 0 chr12 58817062 58817096 -84969359 + (CGG)n Simple_repeat Simple_repeat 3 36 0 218 348 0 0 chr12 58817116 58817208 -84969247 + CT-rich Low_complexity Low_complexity 2 93 0 783 177 0 0 chr12 58817793 58817923 -84968532 - FLAM_A SINE Alu -3 130 1 1941 138 47 14 chr12 58817939 58818235 -84968220 - AluJb SINE Alu -6 306 1 2399 102 0 0 chr12 58818245 58818550 -84967905 - AluSg SINE Alu -5 305 1 1588 124 5 5 chr12 58819670 58819888 -84966567 - AluJo SINE Alu -81 231 14 250 324 114 0 chr12 58820746 58820851 -84965604 + MIR SINE MIR 31 147 -115 187 347 68 54 chr12 58821483 58821672 -84964783 + L2 LINE L2 2155 2351 -963 1642 174 0 8 chr12 58821672 58821931 -84964524 - AluJb SINE Alu -55 257 1 187 347 68 54 chr12 58821931 58822035 -84964420 + L2 LINE L2 2351 2452 -862 2254 106 3 0 chr12 58822537 58822830 -84963625 - AluSp SINE Alu -19 294 1 383 271 246 19 chr12 58822930 58823137 -84963318 + MIR SINE MIR 8 261 -1 665 283 122 0 chr12 58823140 58823370 -84963085 + MIR SINE MIR 4 261 -1 2370 88 7 0 chr12 58823382 58823676 -84962779 - AluSq SINE Alu -17 296 1 1536 105 19 0 chr12 58824001 58824210 -84962245 - AluY SINE Alu -16 295 83 1893 91 25 0 chr12 58824210 58824328 -84962127 - AluSc SINE Alu -61 248 134 2543 77 3 0 chr12 58824328 58824640 -84961815 - AluSp SINE Alu 0 313 1 1893 91 25 0 chr12 58824640 58824763 -84961692 - AluSc SINE Alu -175 134 1 1524 187 3 24 chr12 58824774 58825063 -84961392 - AluJo SINE Alu -22 290 8 311 172 0 17 chr12 58825413 58825471 -84960984 + L2 LINE L2 3213 3269 -3 244 259 74 0 chr12 58827123 58827204 -84959251 + Charlie7 DNA MER1_type 6 92 -2520 2430 78 0 3 chr12 58827205 58827500 -84958955 - AluSc SINE Alu -11 298 5 2555 69 0 3 chr12 58827623 58827928 -84958527 - AluY SINE Alu -7 304 1 2478 82 0 0 chr12 58827929 58828223 -84958232 - AluSq SINE Alu -19 294 1 2398 73 0 20 chr12 58829841 58830142 -84956313 - AluSg SINE Alu -15 295 1 661 208 8 0 chr12 58830146 58830276 -84956179 - FLAM_C SINE Alu -2 131 1 2084 141 0 20 chr12 58830360 58830659 -84955796 - AluJb SINE Alu -19 293 1 2096 98 0 44 chr12 58830670 58830987 -84955468 - AluSx SINE Alu 0 304 1 376 293 23 0 chr12 58831048 58831181 -84955274 - L1ME LINE L1 -304 5817 5682 2325 106 0 13 chr12 58832699 58833002 -84953453 - AluSx SINE Alu -13 299 1 2220 112 3 0 chr12 58833002 58833297 -84953158 - AluSx SINE Alu -16 296 1 2564 63 3 0 chr12 58833869 58834169 -84952286 - AluSp SINE Alu -12 301 1 443 268 111 35 chr12 58834260 58834458 -84951997 - MIR SINE MIR -44 218 6 297 254 15 22 chr12 58836646 58836780 -84949675 + G-rich Low_complexity Low_complexity 2 134 0 31 26 0 0 chr12 58836829 58836867 -84949588 + GC_rich Low_complexity Low_complexity 1 38 0 320 261 25 25 chr12 58836974 58837135 -84949320 + C-rich Low_complexity Low_complexity 5 165 0 516 60 0 0 chr12 58837889 58837956 -84948499 + tRNA-Ser-TCA tRNA tRNA 7 73 -12 2272 103 7 0 chr12 58837970 58838262 -84948193 - AluSx SINE Alu 0 312 19 272 257 0 0 chr12 58838756 58838826 -84947629 - MIR SINE MIR -1 261 192 1913 125 29 48 chr12 58838941 58839253 -84947202 - AluJo SINE Alu -6 306 1 2235 120 0 7 chr12 58839589 58839897 -84946558 + AluSg SINE Alu 5 310 0 2124 128 20 0 chr12 58841356 58841660 -84944795 - AluSx SINE Alu 0 312 3 2379 90 0 0 chr12 58841687 58841977 -84944478 - AluSc SINE Alu -14 295 6 2602 47 0 3 chr12 58841988 58842287 -84944168 - AluY SINE Alu -13 298 1 1850 175 0 3 chr12 58842333 58842618 -84943837 - AluJb SINE Alu -27 285 2 2565 75 3 0 chr12 58842688 58842994 -84943461 - AluSp SINE Alu -5 308 2 302 216 206 20 chr12 58843058 58843160 -84943295 + MARNA DNA Mariner 117 237 -349 194 355 68 44 chr12 58843322 58843358 -84943097 + L2 LINE L2 2223 2257 -1057 2317 110 0 7 chr12 58843358 58843667 -84942788 - AluSq SINE Alu -6 307 1 194 355 68 44 chr12 58843667 58843878 -84942577 + L2 LINE L2 2257 2476 -838 2199 93 14 0 chr12 58843891 58844199 -84942256 - AluSx SINE Alu 0 312 1 482 229 66 8 chr12 58844201 58844323 -84942132 - FLAM_A SINE Alu -4 129 1 1704 165 35 3 chr12 58844638 58844923 -84941532 - AluJb SINE Alu -14 298 5 216 328 0 0 chr12 58844947 58845011 -84941444 + MIR SINE MIR 193 256 -6 2064 71 43 11 chr12 58847027 58847309 -84939146 + AluY SINE Alu 1 291 -20 207 0 0 0 chr12 58847675 58847698 -84938757 + (T)n Simple_repeat Simple_repeat 1 23 0 490 224 27 20 chr12 58848009 58848156 -84938299 + Charlie2 DNA MER1_type 2430 2577 -285 2677 37 0 0 chr12 58848178 58848477 -84937978 + AluY SINE Alu 1 299 -12 2473 99 0 0 chr12 58848477 58848789 -84937666 + AluSx SINE Alu 1 312 0 1034 200 0 0 chr12 58848795 58848975 -84937480 + AluJb SINE Alu 120 299 -13 306 70 0 0 chr12 58848975 58849018 -84937437 + MER101 LTR ERV1 432 474 0 304 283 0 37 chr12 58849018 58849123 -84937332 + MLT1K LTR MaLR 101 268 -320 2062 97 34 0 chr12 58849264 58849531 -84936924 - AluSq SINE Alu -37 276 1 1736 189 0 14 chr12 58849594 58849880 -84936575 + AluJo SINE Alu 1 282 -30 423 221 0 0 chr12 58849881 58849967 -84936488 - AluSg/x SINE Alu -22 288 203 2209 107 23 13 chr12 58850068 58850378 -84936077 + AluSp SINE Alu 1 313 0 22 0 0 0 chr12 58850453 58850475 -84935980 + AT_rich Low_complexity Low_complexity 1 22 0 429 111 16 0 chr12 58851474 58851537 -84934918 + AluS SINE Alu 2 65 -247 548 189 47 31 chr12 58851600 58851727 -84934728 + L2 LINE L2 3139 3267 -5 403 267 46 8 chr12 58852533 58852664 -84933791 - MIR SINE MIR -113 149 14 194 339 0 0 chr12 58853597 58853662 -84932793 + L2 LINE L2 2918 2982 -290 329 257 18 46 chr12 58854761 58854870 -84931585 + MIR SINE MIR 28 133 -129 7024 99 50 2 chr12 58855141 58856167 -84930288 - HSMAR1 DNA Mariner -173 1114 40 2224 113 7 0 chr12 58856488 58856789 -84929666 - AluSx SINE Alu -9 303 1 442 256 94 6 chr12 58856797 58856957 -84929498 - MIR SINE MIR -12 250 77 2196 103 14 3 chr12 58856998 58857288 -84929167 - AluSx SINE Alu -19 293 1 298 268 14 0 chr12 58858296 58858367 -84928088 - MIR SINE MIR -59 149 78 324 265 95 27 chr12 58860019 58860166 -84926289 + MIR3 SINE MIR 17 173 -35 310 123 35 0 chr12 58860561 58860618 -84925837 - AluJ/FLAM SINE Alu -243 59 1 340 240 31 0 chr12 58860625 58860721 -84925734 + MIR SINE MIR 48 146 -62 456 335 34 0 chr12 58861362 58861538 -84924917 + MIR SINE MIR 12 193 -69 4220 131 22 22 chr12 58861978 58862895 -84923560 + L1MA1 LINE L1 5122 6035 -267 2265 93 7 0 chr12 58863297 58863586 -84922869 - AluSp SINE Alu -21 292 2 894 177 12 0 chr12 58863587 58863751 -84922704 - FRAM SINE Alu 0 166 1 216 0 0 0 chr12 58863752 58863776 -84922679 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2295 73 0 21 chr12 58863776 58864064 -84922391 - AluY SINE Alu -29 282 1 2079 107 0 4 chr12 58864064 58864335 -84922120 - AluSq SINE Alu -17 296 27 1380 149 0 5 chr12 58864338 58864546 -84921909 - AluJb SINE Alu -21 291 85 2000 113 42 0 chr12 58866708 58866991 -84919464 - AluSg1 SINE Alu -14 295 1 24 0 0 0 chr12 58867112 58867136 -84919319 + AT_rich Low_complexity Low_complexity 1 24 0 2074 148 0 0 chr12 58868057 58868354 -84918101 + AluJb SINE Alu 5 301 -11 1573 172 51 6 chr12 58868868 58869200 -84917255 - L1PB4 LINE L1 -3 6153 5807 2394 73 0 20 chr12 58870514 58870817 -84915638 + AluSq SINE Alu 1 297 -16 207 0 0 0 chr12 58870904 58870927 -84915528 + (T)n Simple_repeat Simple_repeat 1 23 0 2291 91 0 7 chr12 58870941 58871239 -84915216 + AluSg SINE Alu 1 296 -14 304 148 0 5 chr12 58871239 58871305 -84915150 - FAM SINE Alu -6 169 125 236 265 0 71 chr12 58872322 58872420 -84914035 + CT-rich Low_complexity Low_complexity 2 92 0 291 337 94 6 chr12 58874867 58875048 -84911407 + L2 LINE L2 2457 2653 -661 599 191 0 40 chr12 58878366 58878492 -84907963 - MER2 DNA MER2_type -215 130 10 1824 125 29 18 chr12 58878692 58878972 -84907483 - AluSq SINE Alu 0 313 31 280 326 18 22 chr12 58879342 58879502 -84906953 + G-rich Low_complexity Low_complexity 1 223 0 304 148 0 5 chr12 58880611 58880677 -84905778 + FAM SINE Alu 125 169 -6 2464 74 0 7 chr12 58880677 58880974 -84905481 - AluSg SINE Alu -14 296 2 725 163 54 41 chr12 58881032 58881179 -84905276 - MER52C-int LTR ERV1 -4808 1138 990 447 113 56 0 chr12 58881188 58881259 -84905196 - MER52C-int LTR ERV1 -5544 1547 1473 * 1906 138 55 14 chr12 58881243 58881590 -84904865 - MER52C-int LTR ERV1 -5934 1157 797 * 6926 160 19 10 chr12 58881586 58882549 -84903906 - MER52C-int LTR ERV1 -3868 3223 2172 2816 26 0 0 chr12 58882549 58882853 -84903602 - AluY SINE Alu -7 304 1 6926 160 19 10 chr12 58882853 58883269 -84903186 - MER52C-int LTR ERV1 -4919 2172 1761 473 107 83 0 chr12 58883411 58883495 -84902960 - MER52C-int LTR ERV1 -6520 571 481 3167 116 29 21 chr12 58883547 58884028 -84902427 - MER52C-int LTR ERV1 -6605 486 2 2940 162 104 36 chr12 58884028 58884187 -84902268 - MER52C LTR ERV1 0 1278 1131 2141 103 27 0 chr12 58884187 58884479 -84901976 + AluSx SINE Alu 1 300 -12 2940 162 104 36 chr12 58884479 58885301 -84901154 - MER52C LTR ERV1 -147 1131 1 1467 151 24 77 chr12 58885301 58885599 -84900856 + AluJo SINE Alu 31 312 0 888 221 67 0 chr12 58885599 58885839 -84900616 + L1M4 LINE L1 2515 2770 -3376 1379 169 112 25 chr12 58885839 58886117 -84900338 - AluJo SINE Alu 0 302 1 3871 168 137 30 chr12 58886406 58887858 -84898597 - MER52A LTR ERV1 0 1755 4 261 350 53 38 chr12 58888683 58888946 -84897509 + LTR16B LTR ERVL 18 284 -180 2319 86 17 0 chr12 58889242 58889543 -84896912 - AluY SINE Alu -5 306 1 2129 118 0 73 chr12 58889661 58889991 -84896464 + AluSx SINE Alu 1 306 -6 2267 121 0 3 chr12 58890002 58890307 -84896148 + AluSx SINE Alu 1 304 -8 2153 128 7 0 chr12 58890935 58891232 -84895223 - AluSx SINE Alu -8 304 6 266 253 0 91 chr12 58892666 58892765 -84893690 + L2 LINE L2 3160 3249 -23 1699 149 52 42 chr12 58892771 58893080 -84893375 - AluJo SINE Alu 0 312 1 207 0 0 0 chr12 58893094 58893117 -84893338 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 214 343 60 0 chr12 58893118 58893185 -84893270 - L2 LINE L2 -61 3211 3141 2127 106 38 10 chr12 58893212 58893504 -84892951 - AluSx SINE Alu -11 301 2 203 327 6 103 chr12 58893593 58893673 -84892782 - L2 LINE L2 -220 3052 2993 360 0 0 0 chr12 58893673 58893713 -84892742 + (TG)n Simple_repeat Simple_repeat 2 41 0 203 327 6 103 chr12 58893713 58893788 -84892667 - L2 LINE L2 -279 2993 2912 323 233 41 0 chr12 58893934 58894007 -84892448 - MER2 DNA MER2_type -3 342 267 1191 202 0 4 chr12 58894034 58894262 -84892193 + AluJb SINE Alu 86 312 0 388 207 130 2 chr12 58894266 58894358 -84892097 + L1MC4 LINE L1 1995 6983 -1339 992 136 75 30 chr12 58894370 58894569 -84891886 - MER2 DNA MER2_type -137 208 1 388 255 94 40 chr12 58896910 58897059 -84889396 + MIR3 SINE MIR 45 201 -7 267 103 0 0 chr12 58897902 58897941 -84888514 + (TCC)n Simple_repeat Simple_repeat 2 40 0 416 262 122 31 chr12 58898346 58898632 -84887823 + L1ME4a LINE L1 5717 6028 -93 535 259 184 0 chr12 58898636 58898810 -84887645 + MER6B DNA MER2_type 4 209 -1 204 211 0 0 chr12 58899379 58899417 -84887038 + CT-rich Low_complexity Low_complexity 3 40 0 252 354 109 7 chr12 58899493 58899640 -84886815 - L2 LINE L2 -4 3268 3107 1901 151 0 0 chr12 58899856 58900134 -84886321 + AluJo SINE Alu 1 278 -34 192 111 0 0 chr12 58900136 58900172 -84886283 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 287 246 146 20 chr12 58900332 58900509 -84885946 + MIR SINE MIR 18 262 0 1374 89 0 0 chr12 58900649 58900817 -84885638 - AluSp SINE Alu -12 301 134 2456 98 0 0 chr12 58900817 58901123 -84885332 - AluSx SINE Alu -6 306 1 886 192 13 0 chr12 58901228 58901379 -84885076 - FRAM SINE Alu -18 158 6 2140 150 0 0 chr12 58901386 58901686 -84884769 - AluSx SINE Alu -12 300 1 2059 135 11 0 chr12 58901858 58902139 -84884316 - AluSx SINE Alu -28 284 1 236 284 60 0 chr12 58902226 58902293 -84884162 + L2 LINE L2 3242 3312 -1 2291 99 7 3 chr12 58903467 58903761 -84882694 - AluSx SINE Alu -17 295 1 1866 125 19 51 chr12 58903761 58904073 -84882382 - AluSx SINE Alu -8 304 3 1833 197 0 3 chr12 58904627 58904926 -84881529 - AluJo SINE Alu -14 298 1 852 142 0 0 chr12 58904936 58905063 -84881392 - FLAM_C SINE Alu -6 127 1 2457 87 0 0 chr12 58905331 58905631 -84880824 + AluSq SINE Alu 1 300 -13 1328 227 67 16 chr12 58905982 58906494 -84879961 - Tigger7 DNA MER2_type -2 2485 1 2447 67 3 32 chr12 58906922 58907235 -84879220 + AluY SINE Alu 1 304 -7 2297 106 7 0 chr12 58908716 58909018 -84877437 + AluSp SINE Alu 1 304 -9 1307 209 54 16 chr12 58909030 58909288 -84877167 + AluJo SINE Alu 1 268 -44 998 170 0 48 chr12 58909637 58909802 -84876653 - AluJo SINE Alu -30 282 126 976 96 82 7 chr12 58909802 58909937 -84876518 + AluSq/x SINE Alu 1 145 -168 2543 81 0 0 chr12 58909938 58910245 -84876210 + AluY SINE Alu 1 307 -4 1695 157 52 17 chr12 58910287 58910574 -84875881 + AluJb SINE Alu 2 298 -14 2249 68 7 0 chr12 58910616 58910932 -84875523 + AluY SINE Alu 1 318 0 2298 118 0 0 chr12 58910942 58911248 -84875207 + AluSp SINE Alu 1 306 -7 2362 76 0 41 chr12 58913054 58913224 -84873231 - AluY SINE Alu -8 303 150 2702 46 0 0 chr12 58913224 58913526 -84872929 - AluY SINE Alu -9 302 1 2362 76 0 41 chr12 58913526 58913670 -84872785 - AluY SINE Alu -161 150 2 447 335 32 6 chr12 58913790 58913948 -84872507 - MIR3 SINE MIR -7 201 40 1770 187 3 20 chr12 58914385 58914684 -84871771 + AluJb SINE Alu 1 294 -18 22 80 0 0 chr12 58914713 58914763 -84871692 + AT_rich Low_complexity Low_complexity 1 50 0 2250 130 3 0 chr12 58914932 58915240 -84871215 - AluSx SINE Alu -2 310 2 225 108 0 0 chr12 58915264 58915301 -84871154 + (TTA)n Simple_repeat Simple_repeat 3 39 0 964 162 0 7 chr12 58915307 58915455 -84871000 - FRAM SINE Alu -30 146 1 1382 153 149 4 chr12 58915723 58915964 -84870491 + AluSx SINE Alu 1 276 -36 1941 160 24 0 chr12 58915978 58916271 -84870184 + AluJo SINE Alu 3 302 -10 1386 188 20 4 chr12 58916271 58916516 -84869939 - AluJb SINE Alu -63 249 1 421 259 223 0 chr12 58916516 58916655 -84869800 - MIR SINE MIR -71 191 22 2154 125 13 6 chr12 58916891 58917202 -84869253 - AluSp SINE Alu 0 313 1 1046 112 0 0 chr12 58917202 58917336 -84869119 - AluSq/x SINE Alu -177 136 3 1591 154 6 90 chr12 58917345 58917656 -84868799 - AluJb SINE Alu -27 285 1 1047 195 0 0 chr12 58917794 58917968 -84868487 - FAM SINE Alu -1 174 1 2529 76 0 0 chr12 58917977 58918281 -84868174 - AluY SINE Alu -7 304 1 1803 148 3 66 chr12 58918381 58918698 -84867757 + AluJo SINE Alu 2 298 -14 1703 113 0 0 chr12 58918744 58918965 -84867490 + AluSg/x SINE Alu 85 305 -7 278 247 81 117 chr12 58918984 58919129 -84867326 + MIR SINE MIR 47 183 -79 1067 114 361 40 chr12 58919129 58919356 -84867099 + AluSg SINE Alu 1 300 0 278 247 81 117 chr12 58919356 58919433 -84867022 + MIR SINE MIR 183 261 -1 1551 81 0 0 chr12 58920417 58920603 -84865852 + AluSq SINE Alu 1 186 -127 317 133 17 0 chr12 58920603 58920663 -84865792 + AluSq SINE Alu 235 295 -7 1984 157 0 7 chr12 58923006 58923305 -84863150 - AluJb SINE Alu -15 297 1 2263 112 3 0 chr12 58923764 58924060 -84862395 + AluSp SINE Alu 1 297 -16 1574 112 0 9 chr12 58924344 58924558 -84861897 - AluSg/x SINE Alu -16 294 83 1480 147 52 32 chr12 58925632 58925883 -84860572 - AluJb SINE Alu -56 256 1 232 364 78 16 chr12 58925918 58926047 -84860408 - MER5A DNA MER1_type -4 185 49 2385 59 7 26 chr12 58926081 58926388 -84860067 - AluY SINE Alu -10 301 1 787 175 32 0 chr12 58926392 58926518 -84859937 - FLAM_C SINE Alu -3 130 1 2359 109 0 3 chr12 58926526 58926829 -84859626 - AluSx SINE Alu -10 302 1 276 229 21 73 chr12 58926873 58926969 -84859486 + L2 LINE L2 3223 3313 0 470 313 151 42 chr12 58927070 58927354 -84859101 + L2 LINE L2 2958 3272 0 2566 71 0 0 chr12 58927433 58927744 -84858711 - AluY SINE Alu 0 311 1 1759 160 33 27 chr12 58928051 58928351 -84858104 + AluJo SINE Alu 1 302 -10 2171 73 4 4 chr12 58930920 58931192 -84855263 + AluSp SINE Alu 2 273 -40 434 171 0 0 chr12 58931341 58931411 -84855044 - AluJ/FLAM SINE Alu -241 71 2 2307 99 10 19 chr12 58931855 58932169 -84854286 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 58932176 58932197 -84854258 + AT_rich Low_complexity Low_complexity 1 21 0 279 128 0 0 chr12 58932227 58932266 -84854189 - Alu SINE Alu -263 39 1 908 122 8 0 chr12 58932474 58932605 -84853850 - AluSg/x SINE Alu -6 306 175 1964 50 38 91 chr12 58932605 58932654 -84853801 - LTR10C LTR ERV1 -2 589 539 185 0 40 0 chr12 58932654 58932679 -84853776 + (TTTAA)n Simple_repeat Simple_repeat 2 27 0 1964 50 38 91 chr12 58932679 58932691 -84853764 - LTR10C LTR ERV1 -52 539 528 2309 58 0 68 chr12 58932691 58933002 -84853453 - AluY SINE Alu -21 290 1 1964 50 38 91 chr12 58933002 58933197 -84853258 - LTR10C LTR ERV1 -63 528 350 2185 96 24 3 chr12 58933197 58933489 -84852966 - AluY SINE Alu -13 298 1 1964 50 38 91 chr12 58933489 58933550 -84852905 - LTR10C LTR ERV1 -241 350 287 187 283 50 50 chr12 58933889 58933988 -84852467 + L3 LINE CR1 829 927 -650 237 65 0 0 chr12 58934240 58934271 -84852184 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 491 314 42 17 chr12 58934414 58934663 -84851792 - MIR SINE MIR -6 256 5 296 299 40 36 chr12 58934728 58934916 -84851539 - MIR SINE MIR -56 206 17 2124 113 3 3 chr12 58935090 58935397 -84851058 + AluSg SINE Alu 1 307 0 2213 110 3 7 chr12 58935406 58935707 -84850748 + AluSx SINE Alu 3 302 -10 809 159 0 8 chr12 58935711 58935837 -84850618 + FLAM_C SINE Alu 2 126 -7 2443 63 3 25 chr12 58935858 58936176 -84850279 + AluY SINE Alu 1 311 0 1559 164 11 50 chr12 58936641 58936921 -84849534 + AluJo SINE Alu 3 271 -41 1772 133 61 0 chr12 58936989 58937252 -84849203 + AluSx SINE Alu 27 305 -7 228 265 31 51 chr12 58937425 58937523 -84848932 - MIR SINE MIR -50 212 117 2271 121 6 10 chr12 58937641 58937954 -84848501 + AluSq SINE Alu 1 312 -1 2331 87 16 10 chr12 58938088 58938399 -84848056 - AluSq SINE Alu 0 313 1 237 204 20 0 chr12 58939118 58939167 -84847288 + (TTA)n Simple_repeat Simple_repeat 2 51 0 994 155 61 0 chr12 58939236 58939417 -84847038 - L1MB3 LINE L1 -3 6180 5989 1564 205 0 17 chr12 58940014 58940316 -84846139 + AluJo SINE Alu 5 301 -11 2110 105 11 4 chr12 58940352 58940628 -84845827 + AluSq SINE Alu 1 278 -35 2026 123 7 0 chr12 58940773 58941049 -84845406 - AluSq SINE Alu -35 278 1 2415 89 0 0 chr12 58941545 58941847 -84844608 + AluY SINE Alu 1 302 -9 710 211 30 0 chr12 58941858 58941991 -84844464 + AluJo SINE Alu 2 138 -174 2305 97 0 0 chr12 58942931 58943219 -84843236 + AluSg SINE Alu 1 288 -22 709 218 0 0 chr12 58943285 58943418 -84843037 + FLAM_C SINE Alu 11 143 0 366 129 0 0 chr12 58944356 58944418 -84842037 - Alu SINE Alu -1 299 238 1018 180 6 6 chr12 58944441 58944608 -84841847 - FRAM SINE Alu -10 166 1 2429 93 0 10 chr12 58944642 58944954 -84841501 - AluSg SINE Alu -1 309 1 1899 156 3 17 chr12 58945054 58945355 -84841100 + AluJo SINE Alu 2 298 -14 1703 113 0 0 chr12 58945401 58945622 -84840833 + AluSg/x SINE Alu 83 303 -7 272 246 80 121 chr12 58945641 58945786 -84840669 + MIR SINE MIR 47 181 -81 1067 114 361 40 chr12 58945786 58946013 -84840442 + AluSg SINE Alu 1 300 0 272 246 80 121 chr12 58946013 58946091 -84840364 + MIR SINE MIR 181 261 -1 1551 81 0 0 chr12 58947075 58947261 -84839194 + AluSq SINE Alu 1 186 -127 317 133 17 0 chr12 58947261 58947321 -84839134 + AluSq SINE Alu 235 295 -7 1970 157 0 7 chr12 58949663 58949962 -84836493 - AluJb SINE Alu -15 297 1 2263 112 3 0 chr12 58950422 58950718 -84835737 + AluSp SINE Alu 1 297 -16 1574 112 0 9 chr12 58951002 58951216 -84835239 - AluSg/x SINE Alu -16 294 83 1480 147 52 32 chr12 58952290 58952541 -84833914 - AluJb SINE Alu -56 256 1 221 372 78 16 chr12 58952576 58952705 -84833750 - MER5A DNA MER1_type -4 185 49 1436 81 20 0 chr12 58952738 58952936 -84833519 - AluY SINE Alu 0 311 110 326 296 26 40 chr12 58953174 58953326 -84833129 - L2 LINE L2 -5 3308 3159 333 311 19 0 chr12 58953930 58954033 -84832422 + L2 LINE L2 3136 3240 -32 390 165 153 0 chr12 58954041 58954126 -84832329 + L2 LINE L2 3216 3313 0 1928 126 14 18 chr12 58954297 58954583 -84831872 - AluY SINE Alu -26 285 1 2271 117 7 0 chr12 58954596 58954903 -84831552 - AluSq SINE Alu -4 309 1 2400 93 0 0 chr12 58955399 58955701 -84830754 + AluY SINE Alu 1 302 -9 710 211 30 0 chr12 58955712 58955845 -84830610 + AluJo SINE Alu 2 138 -174 2305 97 0 0 chr12 58956785 58957073 -84829382 + AluSg SINE Alu 1 288 -22 709 218 0 0 chr12 58957139 58957272 -84829183 + FLAM_C SINE Alu 11 143 0 366 129 0 0 chr12 58958210 58958272 -84828183 - Alu SINE Alu -1 300 239 1394 136 26 153 chr12 58958295 58958504 -84827951 - AluSx SINE Alu 0 302 153 2431 98 0 3 chr12 58958504 58958810 -84827645 - AluSg SINE Alu -5 305 1 1394 136 26 153 chr12 58958810 58958946 -84827509 - AluSx SINE Alu -149 153 1 2128 112 0 63 chr12 58958946 58959147 -84827308 - AluSg SINE Alu 0 310 137 2524 67 0 6 chr12 58959147 58959459 -84826996 - AluY SINE Alu -1 310 1 2128 112 0 63 chr12 58959459 58959588 -84826867 - AluSg SINE Alu -173 137 1 2259 113 0 16 chr12 58959869 58960187 -84826268 + AluSq SINE Alu 1 313 0 1596 193 59 3 chr12 58960214 58960504 -84825951 + AluSx SINE Alu 3 308 -4 2254 93 7 0 chr12 58960641 58960930 -84825525 - AluSp SINE Alu -21 292 2 2057 119 3 16 chr12 58960931 58961097 -84825358 - AluSc SINE Alu -10 299 132 216 0 0 0 chr12 58961097 58961121 -84825334 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2213 73 0 24 chr12 58961121 58961408 -84825047 - AluY SINE Alu -29 282 3 2057 119 3 16 chr12 58961408 58961543 -84824912 - AluSc SINE Alu -175 134 1 1985 152 13 13 chr12 58961611 58961920 -84824535 - AluJb SINE Alu -3 309 1 939 126 0 15 chr12 58962136 58962271 -84824184 - FLAM_C SINE Alu 0 133 1 2474 83 0 0 chr12 58962332 58962632 -84823823 - AluY SINE Alu -11 300 1 2481 95 0 9 chr12 58962693 58963008 -84823447 - AluSx SINE Alu 0 312 1 1611 188 66 60 chr12 58963331 58963510 -84822945 + MLT2A2 LTR ERVL 1 177 -377 2143 87 0 57 chr12 58963510 58963856 -84822599 + AluSx SINE Alu 1 329 0 1611 188 66 60 chr12 58963856 58964216 -84822239 + MLT2A2 LTR ERVL 177 542 -12 2134 101 7 32 chr12 58965760 58966068 -84820387 + AluSx SINE Alu 1 300 -12 456 259 184 43 chr12 58966163 58966395 -84820060 - MIR SINE MIR -1 261 6 2216 99 3 0 chr12 58967210 58967493 -84818962 - AluSx SINE Alu -23 289 6 1699 184 0 30 chr12 58971409 58971603 -84814852 - AluJb SINE Alu -16 296 113 2243 100 10 26 chr12 58971603 58971913 -84814542 + AluSp SINE Alu 1 305 -8 1699 184 0 30 chr12 58971913 58972023 -84814432 - AluJb SINE Alu -199 113 1 1008 198 0 0 chr12 58972035 58972197 -84814258 - FAM SINE Alu -10 165 4 2364 101 3 0 chr12 58972865 58973162 -84813293 + AluSc SINE Alu 1 298 -11 220 250 108 102 chr12 58973930 58974106 -84812349 - MIR SINE MIR 0 262 86 2324 93 3 3 chr12 58974125 58974414 -84812041 - AluSp SINE Alu -24 289 1 1816 179 0 3 chr12 58974601 58974886 -84811569 + AluJb SINE Alu 2 285 -27 2193 110 3 0 chr12 58974932 58975223 -84811232 + AluSc SINE Alu 1 292 -17 181 57 57 0 chr12 58975224 58975259 -84811196 + (TA)n Simple_repeat Simple_repeat 2 38 0 219 323 43 32 chr12 58975260 58975353 -84811102 - MIR SINE MIR -78 184 91 1992 143 0 23 chr12 58975371 58975672 -84810783 + AluJb SINE Alu 5 298 -14 2345 104 0 0 chr12 58975680 58975978 -84810477 + AluSx SINE Alu 1 298 -14 1771 159 13 3 chr12 58976024 58976325 -84810130 - MER1B DNA MER1_type -35 304 1 2292 90 0 3 chr12 58976371 58976661 -84809794 - AluSx SINE Alu -15 297 9 2482 80 0 0 chr12 58976764 58977075 -84809380 - AluY SINE Alu 0 311 1 2471 93 0 0 chr12 58977793 58978094 -84808361 - AluSx SINE Alu -11 301 1 2500 84 0 0 chr12 58978195 58978494 -84807961 - AluSc SINE Alu -10 299 1 320 335 102 70 chr12 58978503 58979082 -84807373 + L2 LINE L2 2553 3112 -160 2178 138 0 0 chr12 58979082 58979386 -84807069 - AluSx SINE Alu -8 304 1 2380 84 3 0 chr12 58979396 58979692 -84806763 - AluSx SINE Alu -15 297 1 320 335 102 70 chr12 58979692 58979779 -84806676 + L2 LINE L2 3120 3272 0 2313 81 27 3 chr12 58980440 58980735 -84805720 + AluSc SINE Alu 1 302 -7 232 224 264 23 chr12 58981589 58981763 -84804692 - L1MC4a LINE L1 -1636 6172 5957 186 191 0 0 chr12 58981778 58981820 -84804635 + (TA)n Simple_repeat Simple_repeat 2 43 0 811 95 29 0 chr12 58981824 58981929 -84804526 - AluSq/x SINE Alu -205 108 1 2292 116 0 0 chr12 58981938 58982240 -84804215 - AluY SINE Alu -9 302 1 1697 168 0 57 chr12 58982577 58982746 -84803709 - AluJb SINE Alu -14 298 154 2157 100 39 0 chr12 58982746 58983026 -84803429 - AluSg SINE Alu -19 291 1 1697 168 0 57 chr12 58983026 58983171 -84803284 - AluJb SINE Alu -158 154 2 1903 143 3 57 chr12 58984029 58984172 -84802283 + AluSx SINE Alu 5 123 -189 2525 63 0 0 chr12 58984172 58984471 -84801984 + AluY SINE Alu 1 299 -12 1903 143 3 57 chr12 58984471 58984642 -84801813 + AluSx SINE Alu 123 302 -10 2381 97 0 0 chr12 58984764 58985063 -84801392 + AluSq SINE Alu 1 299 -14 2389 99 0 3 chr12 58985063 58985376 -84801079 + AluSp SINE Alu 1 312 -1 361 319 17 0 chr12 58985959 58986078 -84800377 - L2 LINE L2 -3 3310 3190 203 297 34 93 chr12 58986531 58986649 -84799806 - L2 LINE L2 -25 3247 3137 2601 56 0 0 chr12 58989924 58990226 -84796229 + AluY SINE Alu 1 302 -9 2352 75 27 3 chr12 58990237 58990530 -84795925 + AluY SINE Alu 1 300 -11 1103 173 0 0 chr12 58990580 58990753 -84795702 + AluSc SINE Alu 133 305 -4 698 212 201 5 chr12 58991338 58991522 -84794933 + MER58A DNA MER1_type 1 220 -4 668 154 0 27 chr12 58991577 58991687 -84794768 - FRAM SINE Alu -46 130 24 2190 131 3 3 chr12 58991778 58992090 -84794365 - AluJb SINE Alu 0 312 1 343 265 91 15 chr12 58992107 58992239 -84794216 - L1MC4 LINE L1 -199 7843 7702 1977 133 0 60 chr12 58992244 58992561 -84793894 - AluJb SINE Alu -14 298 1 2242 94 14 3 chr12 58992590 58992876 -84793579 + AluSq SINE Alu 1 289 -24 220 250 108 102 chr12 58992895 58993071 -84793384 + MIR SINE MIR 86 262 0 2279 103 7 10 chr12 58993839 58994141 -84792314 - AluSx SINE Alu -11 301 1 454 221 0 0 chr12 58994242 58994328 -84792127 + AluSg/x SINE Alu 202 287 -22 1606 206 0 17 chr12 58994329 58994616 -84791839 - AluJo SINE Alu -30 282 1 742 85 19 9 chr12 58994679 58994785 -84791670 + AluSg1 SINE Alu 1 107 -202 404 125 0 75 chr12 58994968 58995048 -84791407 + Alu SINE Alu 238 311 -1 545 103 0 13 chr12 58995095 58995173 -84791282 + AluS SINE Alu 1 77 -236 2622 74 0 0 chr12 58997566 58997877 -84788578 - AluSx SINE Alu -1 311 1 203 338 57 14 chr12 58997998 58998104 -84788351 + MIR SINE MIR 21 121 -94 2399 90 3 0 chr12 58998746 58999046 -84787409 + AluSp SINE Alu 2 302 -11 1894 138 43 0 chr12 58999050 58999332 -84787123 + AluJo SINE Alu 1 294 -18 329 346 0 23 chr12 59000712 59000842 -84785613 + (CCCTAG)n Simple_repeat Simple_repeat 1 127 0 475 243 129 14 chr12 59000956 59001096 -84785359 + MIR SINE MIR 2 157 -105 447 291 61 30 chr12 59001154 59001319 -84785136 + MIR SINE MIR 74 243 -19 2243 106 6 19 chr12 59001319 59001455 -84785000 + AluSx SINE Alu 1 137 -175 2405 87 0 10 chr12 59001455 59001754 -84784701 + AluSg SINE Alu 1 296 -14 2243 106 6 19 chr12 59001754 59001929 -84784526 + AluSx SINE Alu 137 308 -4 1830 155 19 35 chr12 59001939 59002256 -84784199 + AluJb SINE Alu 1 312 0 1405 171 126 19 chr12 59002267 59002530 -84783925 + AluSg SINE Alu 2 292 -18 259 287 27 73 chr12 59003018 59003168 -84783287 + MIR3 SINE MIR 58 200 -8 206 315 112 11 chr12 59003767 59003856 -84782599 + MIR SINE MIR 19 116 -92 2007 153 0 7 chr12 59003921 59004221 -84782234 - AluJb SINE Alu -14 298 1 2415 93 3 0 chr12 59004232 59004532 -84781923 - AluSx SINE Alu -11 301 1 565 280 110 30 chr12 59004577 59004813 -84781642 + MIR SINE MIR 8 262 0 2599 60 3 0 chr12 59004815 59005117 -84781338 - AluY SINE Alu -8 303 1 2327 118 0 0 chr12 59006497 59006803 -84779652 + AluSx SINE Alu 1 306 -6 205 268 0 0 chr12 59007070 59007111 -84779344 + MER91 DNA MER1_type 1 41 -149 540 271 118 27 chr12 59007202 59007423 -84779032 + MIR SINE MIR 8 248 -14 1050 215 0 65 chr12 59008412 59008624 -84777831 - MIR SINE MIR -31 231 36 2182 105 7 30 chr12 59008624 59008928 -84777527 - AluSx SINE Alu -15 297 1 1050 215 0 65 chr12 59008928 59008962 -84777493 - MIR SINE MIR -226 36 1 22 0 0 0 chr12 59008965 59008987 -84777468 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 59009079 59009101 -84777354 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr12 59009104 59009124 -84777331 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 376 89 18 0 chr12 59009124 59009180 -84777275 - U7 snRNA snRNA -6 57 1 541 211 48 0 chr12 59009210 59009314 -84777141 + FLAM_C SINE Alu 6 114 -29 261 0 0 0 chr12 59009314 59009343 -84777112 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 602 179 0 26 chr12 59009420 59009537 -84776918 - FLAM_A SINE Alu 0 142 29 1657 163 0 65 chr12 59009562 59009715 -84776740 - AluJo SINE Alu -25 287 162 2240 116 7 0 chr12 59009715 59010009 -84776446 - AluSx SINE Alu -14 298 3 1657 163 0 65 chr12 59010009 59010162 -84776293 - AluJo SINE Alu -150 162 1 23 0 0 0 chr12 59010181 59010204 -84776251 + AT_rich Low_complexity Low_complexity 1 23 0 275 272 103 36 chr12 59010315 59010441 -84776014 + L1ME4a LINE L1 5720 5865 -256 2342 99 0 10 chr12 59010441 59010747 -84775708 + AluSx SINE Alu 1 304 -3 225 0 0 0 chr12 59010747 59010772 -84775683 + (TA)n Simple_repeat Simple_repeat 1 25 0 275 272 103 36 chr12 59010777 59010845 -84775610 + L1ME4a LINE L1 5865 5927 -194 22 35 0 0 chr12 59010918 59010947 -84775508 + AT_rich Low_complexity Low_complexity 1 29 0 237 186 0 0 chr12 59013487 59013530 -84772925 - L1ME4a LINE L1 -105 6016 5974 708 211 52 31 chr12 59013561 59013755 -84772700 - MER46A DNA MER2_type -38 198 1 * 799 177 14 0 chr12 59013616 59013757 -84772698 + MER46A DNA MER2_type 4 146 -90 2203 124 3 10 chr12 59013757 59014063 -84772392 - AluSq SINE Alu -2 311 8 2323 84 0 17 chr12 59014076 59014375 -84772080 - AluY SINE Alu -17 294 1 233 195 130 101 chr12 59014391 59014432 -84772023 - L1MC5 LINE L1 -11 7950 7912 1910 159 33 3 chr12 59014432 59014733 -84771722 - AluJb SINE Alu -2 310 1 233 195 130 101 chr12 59014733 59014860 -84771595 - L1MC5 LINE L1 -49 7912 7777 2474 96 0 0 chr12 59014964 59015276 -84771179 - AluSx SINE Alu 0 312 1 987 142 0 0 chr12 59015499 59015640 -84770815 + AluSg/x SINE Alu 154 294 -16 240 276 10 51 chr12 59015903 59016001 -84770454 + HAL1 LINE L1 2414 2507 0 847 138 0 31 chr12 59016024 59016154 -84770301 + FLAM_C SINE Alu 1 126 -7 188 342 51 0 chr12 59016371 59016450 -84770005 + MIR SINE MIR 82 164 -98 2009 125 0 3 chr12 59017310 59017615 -84768840 - AluJb SINE Alu -8 304 1 285 354 40 49 chr12 59017631 59017857 -84768598 - MIR SINE MIR -38 224 1 1708 168 3 0 chr12 59019032 59019323 -84767132 - AluJo SINE Alu -20 292 1 2174 93 3 0 chr12 59019812 59019942 -84766513 + AluSg SINE Alu 1 129 -181 243 0 0 0 chr12 59019942 59019969 -84766486 + (TA)n Simple_repeat Simple_repeat 2 28 0 2174 93 3 0 chr12 59019969 59020129 -84766326 + AluSg SINE Alu 129 292 -18 185 305 114 29 chr12 59021240 59021345 -84765110 + L2 LINE L2 1360 1473 -1841 1094 153 0 0 chr12 59021579 59021755 -84764700 - AluSg/x SINE Alu 0 312 137 2060 122 7 7 chr12 59021758 59022061 -84764394 - AluSx SINE Alu -7 305 3 2205 91 3 13 chr12 59022191 59022499 -84763956 - AluSp SINE Alu -8 305 1 1305 152 8 21 chr12 59022529 59022766 -84763689 + AluJb SINE Alu 39 272 -40 2294 81 7 0 chr12 59023000 59023297 -84763158 - AluSq SINE Alu -14 299 1 2514 52 0 0 chr12 59023407 59023714 -84762741 - AluY SINE Alu -4 307 1 1608 109 0 0 chr12 59025439 59025668 -84760787 + AluSg SINE Alu 1 229 -81 877 64 6 144 chr12 59025668 59025841 -84760614 + AluSc SINE Alu 157 305 -4 925 216 5 0 chr12 59025886 59026071 -84760384 + MLT1B LTR MaLR 205 390 0 1893 133 8 61 chr12 59026217 59026235 -84760220 - L1MB2 LINE L1 -13 6158 6141 1516 153 82 11 chr12 59026235 59026517 -84759938 + AluJb SINE Alu 1 302 -10 1893 133 8 61 chr12 59026517 59026550 -84759905 - L1MB2 LINE L1 -30 6141 6108 2074 120 13 3 chr12 59026550 59026859 -84759596 - AluSx SINE Alu 0 312 1 1893 133 8 61 chr12 59026859 59027167 -84759288 - L1MB2 LINE L1 -63 6108 5817 618 227 0 8 chr12 59027169 59027297 -84759158 - FLAM_A SINE Alu -12 130 4 7627 188 35 81 chr12 59027356 59027402 -84759053 - L1MB2 LINE L1 -357 5826 5779 2073 118 3 7 chr12 59027402 59027708 -84758747 - AluSx SINE Alu -3 309 5 7627 188 35 81 chr12 59027708 59027910 -84758545 - L1MB2 LINE L1 -404 5779 5569 1985 121 3 13 chr12 59027910 59028216 -84758239 + AluSq SINE Alu 1 303 -10 7627 188 35 81 chr12 59028216 59028757 -84757698 - L1MB2 LINE L1 -614 5569 5005 2233 69 0 14 chr12 59028757 59029074 -84757381 - AluY SINE Alu 0 313 1 7627 188 35 81 chr12 59029074 59029869 -84756586 - L1MB2 LINE L1 -1178 5005 4175 1276 99 0 16 chr12 59029869 59030061 -84756394 + AluSc SINE Alu 111 299 -10 7627 188 35 81 chr12 59030061 59031069 -84755386 - L1MB2 LINE L1 -2008 4175 3179 791 186 84 18 chr12 59031072 59031259 -84755196 - AluSg/x SINE Alu 0 310 132 2105 113 14 0 chr12 59031259 59031570 -84754885 - AluSx SINE Alu 0 312 3 2195 87 7 13 chr12 59031574 59031883 -84754572 - AluY SINE Alu -4 307 1 255 203 0 0 chr12 59031929 59031998 -84754457 - L1MB2 LINE L1 -2989 3157 3089 608 188 153 15 chr12 59032068 59032270 -84754185 - L1MC5 LINE L1 -36 7925 7696 1198 39 39 0 chr12 59032282 59032438 -84754017 - L1PA4 LINE L1 0 6155 5994 1179 229 18 47 chr12 59032474 59032815 -84753640 - L1M4 LINE L1 -1751 4395 4065 692 199 0 0 chr12 59032854 59032985 -84753470 - FLAM_C SINE Alu 0 143 13 2297 82 0 13 chr12 59033014 59033183 -84753272 - AluY SINE Alu -11 300 135 2240 103 0 0 chr12 59033183 59033483 -84752972 - AluSg SINE Alu -10 300 1 2297 82 0 13 chr12 59033483 59033617 -84752838 - AluY SINE Alu -176 135 1 264 215 108 31 chr12 59033628 59033758 -84752697 - L1M4 LINE L1 -1787 4359 4220 1162 137 151 92 chr12 59033768 59034103 -84752352 - AluJo SINE Alu 0 352 1 1382 165 0 12 chr12 59034127 59034375 -84752080 - AluJb SINE Alu -4 308 64 2150 99 3 7 chr12 59034416 59034719 -84751736 - AluSg SINE Alu -8 302 1 296 83 0 0 chr12 59034731 59034767 -84751688 - tRNA-Lys-AAG tRNA tRNA -38 38 3 594 280 17 0 chr12 59034771 59034946 -84751509 - L1M4 LINE L1 -1926 4220 4043 1280 169 57 12 chr12 59034987 59035235 -84751220 + AluJo SINE Alu 1 259 -53 224 250 18 0 chr12 59035235 59035291 -84751164 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1548 172 0 36 chr12 59035757 59036065 -84750390 + AluJo SINE Alu 3 299 -13 1939 118 0 10 chr12 59036134 59036422 -84750033 - AluSx SINE Alu -27 285 1 1372 170 80 38 chr12 59036423 59036885 -84749570 - L1MDa LINE L1 -3934 2606 2191 259 176 59 0 chr12 59036986 59037037 -84749418 - MER4D LTR ERV1 -14 889 836 2139 128 0 0 chr12 59037071 59037383 -84749072 + AluSx SINE Alu 1 312 0 410 244 24 17 chr12 59037458 59037608 -84748847 - LTR39 LTR ERV1 -389 394 35 443 207 14 114 chr12 59037727 59037830 -84748625 + L2 LINE L2 3187 3274 -39 2053 107 7 7 chr12 59037830 59038128 -84748327 - AluSx SINE Alu -14 298 1 443 207 14 114 chr12 59038128 59038164 -84748291 + L2 LINE L2 3274 3312 -1 493 107 0 95 chr12 59038321 59038405 -84748050 - AluJ/FRAM SINE Alu -18 294 219 2829 130 111 10 chr12 59038427 59038943 -84747512 + MER51D LTR ERV1 1 568 -89 1965 107 3 14 chr12 59038944 59039233 -84747222 - AluSx SINE Alu -15 297 12 676 129 40 0 chr12 59039371 59039472 -84746983 - AluSq/x SINE Alu -206 106 2 833 209 19 33 chr12 59039919 59040134 -84746321 - AluSc SINE Alu -1 308 97 241 265 0 20 chr12 59040189 59040291 -84746164 + CT-rich Low_complexity Low_complexity 61 160 0 359 375 26 0 chr12 59040293 59040445 -84746010 + C-rich Low_complexity Low_complexity 6 161 0 190 228 10 50 chr12 59040445 59040546 -84745909 + CT-rich Low_complexity Low_complexity 1 97 0 280 337 0 11 chr12 59040557 59040646 -84745809 + C-rich Low_complexity Low_complexity 4 91 0 369 164 94 47 chr12 59040832 59040904 -84745551 - MER52-int LTR ERV1 -4107 3311 3244 1998 129 3 0 chr12 59040904 59041199 -84745256 - AluSx SINE Alu -16 296 1 369 164 94 47 chr12 59041199 59041247 -84745208 - MER52-int LTR ERV1 -4174 3244 1996 646 191 99 0 chr12 59041268 59041399 -84745056 - MER52-int LTR ERV1 -4818 1128 985 433 129 71 0 chr12 59041412 59041482 -84744973 - MER52-int LTR ERV1 -5544 1547 1473 304 266 0 0 chr12 59041479 59041558 -84744897 - MER52-int LTR ERV1 -5818 1273 1195 * 1940 108 45 0 chr12 59042005 59042293 -84744162 - AluSx SINE Alu -11 301 1 512 191 0 0 chr12 59042325 59042409 -84744046 - AluJo SINE Alu -109 203 120 1656 103 15 37 chr12 59042438 59042711 -84743744 - AluSx SINE Alu -45 267 1 2014 88 46 7 chr12 59043723 59044007 -84742448 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 59044008 59044028 -84742427 + (TA)n Simple_repeat Simple_repeat 2 21 0 2131 122 3 0 chr12 59044203 59044514 -84741941 - AluSx SINE Alu 0 312 1 1364 156 0 78 chr12 59044672 59044967 -84741488 - AluJb SINE Alu -21 291 20 1505 196 0 7 chr12 59045368 59045654 -84740801 + AluJb SINE Alu 29 312 0 2341 85 0 0 chr12 59045976 59046271 -84740184 + AluSx SINE Alu 1 295 -17 307 170 0 149 chr12 59046982 59047076 -84739379 - MER116 DNA Mariner 0 80 1 263 361 9 9 chr12 59047154 59047262 -84739193 - MIR SINE MIR -59 149 42 2203 107 0 0 chr12 59047275 59047575 -84738880 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 59047836 59047858 -84738597 + AT_rich Low_complexity Low_complexity 1 22 0 2182 101 0 16 chr12 59048146 59048454 -84738001 + AluSx SINE Alu 1 303 -9 2136 106 7 0 chr12 59049935 59050237 -84736218 + AluSp SINE Alu 1 304 -9 1173 209 54 16 chr12 59050249 59050507 -84735948 + AluJo SINE Alu 1 268 -44 914 170 0 48 chr12 59050856 59051021 -84735434 - AluJo SINE Alu -30 282 126 1102 111 56 61 chr12 59051021 59051219 -84735236 + AluSx SINE Alu 1 197 -115 288 139 0 0 chr12 59051219 59051262 -84735193 + AluY SINE Alu 63 105 -196 1424 182 61 0 chr12 59051383 59051663 -84734792 - AluJb SINE Alu -15 297 1 1915 105 4 0 chr12 59052167 59052434 -84734021 - AluSx SINE Alu -44 268 1 2071 103 3 3 chr12 59052848 59053138 -84733317 + AluSx SINE Alu 1 290 -22 417 272 64 32 chr12 59053267 59053392 -84733063 + L2 LINE L2 3185 3313 0 2273 83 0 7 chr12 59053452 59053752 -84732703 + AluY SINE Alu 1 298 -13 1075 158 0 51 chr12 59053867 59054082 -84732373 - AluJb SINE Alu -108 204 1 2009 130 3 0 chr12 59054274 59054567 -84731888 - AluSx SINE Alu -18 294 1 235 259 71 12 chr12 59054941 59055026 -84731429 + MIR SINE MIR 71 160 -102 949 186 0 0 chr12 59055344 59055516 -84730939 - AluJ SINE Alu -9 303 132 23 54 0 0 chr12 59055516 59055553 -84730902 + AT_rich Low_complexity Low_complexity 1 37 0 821 161 0 0 chr12 59057781 59057905 -84728550 - AluJ SINE Alu -188 124 1 2379 46 0 10 chr12 59058002 59058308 -84728147 + AluY SINE Alu 1 303 -8 532 170 32 0 chr12 59058308 59058402 -84728053 + L1MC5 LINE L1 5429 5525 -2283 809 190 72 62 chr12 59058402 59058619 -84727836 + AluJo SINE Alu 86 304 0 547 279 73 11 chr12 59058630 59058809 -84727646 + L1MC5 LINE L1 5518 5707 -2101 354 176 27 27 chr12 59058793 59058867 -84727588 + L1MC5 LINE L1 6802 6875 -1086 * 717 148 78 16 chr12 59058871 59058999 -84727456 + AluJo SINE Alu 1 136 -176 845 255 3 48 chr12 59059016 59059333 -84727122 + L1MC5 LINE L1 6875 7153 -808 1915 154 3 3 chr12 59059334 59059645 -84726810 + AluSx SINE Alu 1 311 -1 450 94 0 0 chr12 59059649 59059713 -84726742 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1914 118 4 0 chr12 59059757 59060029 -84726426 + AluSx SINE Alu 1 273 -39 1108 217 14 14 chr12 59060373 59060663 -84725792 - AluSg SINE Alu -9 291 2 1142 234 90 7 chr12 59060785 59061063 -84725392 + AluJb SINE Alu 1 301 -1 1841 111 0 4 chr12 59061122 59061383 -84725072 - AluSx SINE Alu -12 300 41 1578 121 64 0 chr12 59061787 59062036 -84724419 - AluSx SINE Alu -16 296 32 322 317 190 32 chr12 59062113 59062712 -84723743 - L2 LINE L2 -339 2975 2282 229 192 77 0 chr12 59062791 59062843 -84723612 + MIR SINE MIR 185 240 -22 663 217 16 0 chr12 59063405 59063534 -84722921 - FLAM_A SINE Alu -2 131 1 828 178 22 32 chr12 59063570 59063589 -84722866 - AluJo/FRAM SINE Alu 0 312 294 2086 123 7 0 chr12 59063589 59063897 -84722558 - AluSx SINE Alu -2 310 1 828 178 22 32 chr12 59063897 59064062 -84722393 - AluJo/FRAM SINE Alu -18 294 130 268 151 14 27 chr12 59064072 59064145 -84722310 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 1578 178 13 20 chr12 59064175 59064473 -84721982 - AluJo SINE Alu -16 296 1 697 144 0 9 chr12 59065232 59065343 -84721112 - AluJb SINE Alu -2 310 201 504 139 38 0 chr12 59065377 59065456 -84720999 - AluJb SINE Alu -23 289 208 2229 82 3 0 chr12 59065505 59065809 -84720646 - AluY SINE Alu -4 307 3 1577 143 71 58 chr12 59065862 59066170 -84720285 + AluJb SINE Alu 1 312 0 1527 187 3 29 chr12 59066170 59066480 -84719975 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr12 59066852 59066874 -84719581 + AT_rich Low_complexity Low_complexity 1 22 0 2172 128 0 14 chr12 59066874 59067171 -84719284 - AluSx SINE Alu -19 293 1 1657 181 0 0 chr12 59067181 59067452 -84719003 - AluJb SINE Alu -22 290 20 241 242 0 15 chr12 59067465 59067531 -84718924 - MIR SINE MIR -15 247 183 1897 114 99 0 chr12 59067569 59067842 -84718613 + AluSx SINE Alu 1 300 -12 363 246 167 18 chr12 59067865 59067979 -84718476 - L2 LINE L2 -4 3309 3179 225 260 14 0 chr12 59068215 59068288 -84718167 - L1MEc LINE L1 -3720 2495 2422 1963 151 0 3 chr12 59068288 59068593 -84717862 - AluSg SINE Alu -6 304 1 751 167 25 0 chr12 59068624 59068744 -84717711 - FLAM_C SINE Alu -19 124 2 1206 199 22 34 chr12 59068745 59069059 -84717396 - L1MEc LINE L1 -3924 2472 2161 2500 95 0 0 chr12 59069059 59069365 -84717090 - AluY SINE Alu -5 306 1 1206 199 22 34 chr12 59069365 59069407 -84717048 - L1MEc LINE L1 -4235 2161 2120 216 0 0 0 chr12 59069411 59069435 -84717020 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 854 213 7 0 chr12 59069439 59069589 -84716866 - AluJo/FRAM SINE Alu -25 287 137 1668 124 66 8 chr12 59069589 59069830 -84716625 - AluJo SINE Alu -14 298 44 2077 134 0 3 chr12 59069857 59070166 -84716289 - AluSx SINE Alu 0 308 1 1741 190 3 16 chr12 59070166 59070477 -84715978 - AluJb SINE Alu -5 307 1 2339 81 7 3 chr12 59070683 59070980 -84715475 - AluSp SINE Alu -15 298 1 1898 142 47 0 chr12 59071430 59071726 -84714729 + AluSx SINE Alu 1 310 -2 248 167 93 19 chr12 59071890 59071944 -84714511 + L2 LINE L2 3255 3312 -1 2174 148 0 0 chr12 59072261 59072565 -84713890 - AluSx SINE Alu -8 304 1 1138 245 18 61 chr12 59072640 59072882 -84713573 - L1MC/D LINE L1 -2082 5726 5475 2305 100 0 17 chr12 59072882 59073182 -84713273 - AluSx SINE Alu -17 295 1 1138 245 18 61 chr12 59073182 59073245 -84713210 - L1MC/D LINE L1 -2333 5475 5411 2317 92 23 0 chr12 59073245 59073550 -84712905 - AluSp SINE Alu -1 312 1 1138 245 18 61 chr12 59073550 59073727 -84712728 - L1MC/D LINE L1 -2397 5411 5262 1703 192 18 7 chr12 59073727 59073894 -84712561 - AluJo SINE Alu -23 289 116 180 0 0 0 chr12 59073894 59073914 -84712541 + (TG)n Simple_repeat Simple_repeat 1 20 0 1703 192 18 7 chr12 59073914 59074032 -84712423 - AluJo SINE Alu -196 116 1 684 305 0 31 chr12 59074071 59074363 -84712092 - AluY SINE Alu -1 310 28 31 44 0 0 chr12 59074650 59074695 -84711760 + GC_rich Low_complexity Low_complexity 1 45 0 304 262 113 0 chr12 59074956 59075097 -84711358 - L1MC4a LINE L1 -1911 5897 5741 241 279 0 0 chr12 59075108 59075169 -84711286 - MER94 DNA DNA 0 134 74 198 0 0 0 chr12 59075169 59075191 -84711264 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7978 70 4 13 chr12 59075193 59076209 -84710246 + LTR13 LTR ERVK 1 1007 0 5868 218 17 45 chr12 59076213 59077741 -84708714 - HERVK13 LTR ERVK -5669 2447 963 276 177 145 0 chr12 59078439 59078501 -84707954 - HERVK13 LTR ERVK -7284 832 762 3067 215 27 17 chr12 59078619 59079330 -84707125 - HERVK13 LTR ERVK -7398 718 1 6505 77 7 22 chr12 59079330 59080249 -84706206 - LTR13 LTR ERVK 0 1007 103 956 148 7 0 chr12 59080460 59080602 -84705853 + AluJb SINE Alu 1 143 -169 329 135 0 0 chr12 59080603 59080655 -84705800 - AluS SINE Alu -222 80 29 2316 112 3 13 chr12 59080655 59080967 -84705488 - AluSq SINE Alu -2 311 3 181 256 23 0 chr12 59080967 59081010 -84705445 - MIR SINE MIR -1 261 218 2364 237 33 55 chr12 59081051 59081369 -84705086 - L2 LINE L2 -815 2499 2176 2216 136 0 0 chr12 59081369 59081671 -84704784 - AluSx SINE Alu -10 302 1 2364 237 33 55 chr12 59081671 59081943 -84704512 - L2 LINE L2 -1138 2176 1924 2356 89 0 0 chr12 59081943 59082246 -84704209 + AluY SINE Alu 1 303 -8 2364 237 33 55 chr12 59082246 59082347 -84704108 - L2 LINE L2 -1390 1924 1822 751 302 38 36 chr12 59082347 59082767 -84703688 + L1ME3A LINE L1 5477 5897 -273 667 220 168 6 chr12 59082792 59082965 -84703490 + MIR SINE MIR 1 201 -61 22 56 0 0 chr12 59082967 59083003 -84703452 + AT_rich Low_complexity Low_complexity 1 36 0 354 179 60 0 chr12 59083076 59083143 -84703312 + L1M3f LINE L1 2 72 -5256 2280 131 0 0 chr12 59083169 59083475 -84702980 + AluSx SINE Alu 2 307 -5 1959 143 0 13 chr12 59083482 59083782 -84702673 + AluJo SINE Alu 1 296 -16 362 193 0 0 chr12 59083782 59083839 -84702616 + AluSg/x SINE Alu 132 188 -112 512 186 62 31 chr12 59083839 59083968 -84702487 - L1MB7 LINE L1 -134 6050 5918 6085 111 66 49 chr12 59084662 59086623 -84699832 - SVA Other Other -518 1386 266 234 204 19 0 chr12 59086812 59086866 -84699589 + L1MC5 LINE L1 7179 7233 -728 * 379 215 8 41 chr12 59086862 59086983 -84699472 + L1M4 LINE L1 3652 3768 -2378 2467 87 0 6 chr12 59086992 59087303 -84699152 - AluSc SINE Alu 0 309 1 1430 157 0 9 chr12 59087571 59087801 -84698654 + AluJb SINE Alu 85 312 0 2402 43 3 33 chr12 59087950 59088249 -84698206 + AluY SINE Alu 1 290 -21 1185 72 0 26 chr12 59088361 59088513 -84697942 - AluSg1 SINE Alu -161 148 1 1039 113 0 7 chr12 59088549 59088691 -84697764 - AluJo SINE Alu -171 141 1 368 226 44 36 chr12 59088693 59088729 -84697726 - L1M4 LINE L1 -2269 3877 3843 2600 54 3 0 chr12 59088729 59089026 -84697429 - AluY SINE Alu -13 298 1 368 226 44 36 chr12 59089026 59089126 -84697329 - L1M4 LINE L1 -2303 3843 3740 810 176 0 0 chr12 59089129 59089260 -84697195 - FLAM_C SINE Alu -2 131 1 227 226 11 89 chr12 59089325 59089515 -84696940 + (CCCCG)n Simple_repeat Simple_repeat 3 177 0 * 288 193 22 52 chr12 59089382 59089517 -84696938 + (CCGCG)n Simple_repeat Simple_repeat 4 134 0 24 77 0 0 chr12 59089596 59089648 -84696807 + GC_rich Low_complexity Low_complexity 1 52 0 297 278 28 33 chr12 59089730 59089910 -84696545 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 976 139 0 0 chr12 59090034 59090171 -84696284 - FLAM_C SINE Alu -6 137 1 662 103 0 21 chr12 59090218 59090315 -84696140 + AluJb SINE Alu 49 143 -169 2196 107 3 13 chr12 59090316 59090616 -84695839 + AluSx SINE Alu 1 297 -15 1816 172 114 26 chr12 59090617 59091071 -84695384 - MER51D LTR ERV1 -89 568 75 186 43 0 0 chr12 59091963 59091986 -84694469 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 59092233 59092258 -84694197 + AT_rich Low_complexity Low_complexity 1 25 0 697 280 29 21 chr12 59092258 59092537 -84693918 - AluSx SINE Alu -25 287 7 797 144 0 15 chr12 59092974 59093106 -84693349 + FRAM SINE Alu 33 162 -14 2128 126 0 7 chr12 59093259 59093560 -84692895 - AluSq SINE Alu -14 299 1 2386 88 0 3 chr12 59093570 59093864 -84692591 - AluSg SINE Alu -17 293 1 2413 69 0 20 chr12 59093874 59094177 -84692278 - AluY SINE Alu -12 299 3 867 130 0 15 chr12 59094375 59094506 -84691949 + FLAM_C SINE Alu 5 133 0 1755 104 44 0 chr12 59094515 59094764 -84691691 + AluY SINE Alu 1 260 -51 1469 69 0 0 chr12 59095377 59095550 -84690905 - AluY SINE Alu -138 173 1 2091 134 3 3 chr12 59095605 59095904 -84690551 - AluJb SINE Alu -13 299 1 923 185 21 37 chr12 59095933 59096122 -84690333 + MER5A DNA MER1_type 2 187 -2 803 282 79 55 chr12 59096185 59096380 -84690075 + L1MC/D LINE L1 5264 5453 -2355 2450 90 0 0 chr12 59096380 59096680 -84689775 - AluSq SINE Alu -12 301 2 803 282 79 55 chr12 59096680 59097027 -84689428 + L1MC/D LINE L1 5453 5819 -1989 902 136 19 132 chr12 59097038 59097114 -84689341 - MER5A DNA MER1_type 0 189 106 1971 95 0 4 chr12 59097114 59097390 -84689065 + AluSx SINE Alu 32 306 0 902 136 19 132 chr12 59097390 59097525 -84688930 - MER5A DNA MER1_type -83 106 1 640 233 0 0 chr12 59098267 59098383 -84688072 + AluJb SINE Alu 129 244 -68 2178 120 0 7 chr12 59098411 59098711 -84687744 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr12 59098841 59098864 -84687591 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1621 150 8 0 chr12 59098890 59099130 -84687325 - AluSx SINE Alu -70 242 1 2396 99 3 3 chr12 59099143 59099455 -84687000 - AluSp SINE Alu -1 312 1 915 206 53 6 chr12 59099816 59099986 -84686469 + MER5A DNA MER1_type 1 178 -11 450 223 45 0 chr12 59100060 59100172 -84686283 + MER3 DNA MER1_type 21 137 -72 2114 121 17 0 chr12 59100185 59100475 -84685980 + AluSg SINE Alu 1 295 -15 1529 165 65 7 chr12 59100515 59100794 -84685661 + AluJb SINE Alu 5 299 -13 1818 175 3 0 chr12 59100993 59101279 -84685176 + AluSx SINE Alu 2 288 -24 2081 124 3 0 chr12 59101282 59101591 -84684864 + AluSq SINE Alu 2 311 0 2205 127 0 0 chr12 59101593 59101892 -84684563 + AluSg SINE Alu 3 301 -9 2474 85 0 0 chr12 59101898 59102204 -84684251 + AluY SINE Alu 1 306 -5 387 298 159 18 chr12 59102210 59102401 -84684054 + L1MC/D LINE L1 5199 5362 -856 1226 148 11 168 chr12 59102401 59102530 -84683925 + AluJb SINE Alu 2 149 -153 2242 97 0 20 chr12 59102530 59102829 -84683626 - AluSc SINE Alu -16 293 1 1226 148 11 168 chr12 59102829 59103051 -84683404 + AluJb SINE Alu 149 298 -4 2184 96 0 7 chr12 59103051 59103331 -84683124 + AluSx SINE Alu 12 289 -23 387 298 159 18 chr12 59103331 59103374 -84683081 + L1MC/D LINE L1 5361 5464 -754 1872 87 0 4 chr12 59103508 59103737 -84682718 + AluSg SINE Alu 1 228 -82 2342 121 10 54 chr12 59103737 59103990 -84682465 - MER1A DNA MER1_type -2184 528 266 2388 89 0 16 chr12 59103990 59104306 -84682149 + AluY SINE Alu 1 311 0 2342 121 10 54 chr12 59104306 59104318 -84682137 - MER1A DNA MER1_type -2446 266 255 6345 129 27 31 chr12 59104318 59105393 -84681062 - MER11C LTR ERVK 0 1071 1 2342 121 10 54 chr12 59105393 59105600 -84680855 - MER1A DNA MER1_type -2457 255 1 248 395 23 38 chr12 59105816 59106079 -84680376 - L2 LINE L2 -2507 807 549 242 56 28 0 chr12 59106298 59106334 -84680121 + (TCTCCC)n Simple_repeat Simple_repeat 4 40 0 281 243 37 0 chr12 59106341 59106448 -84680007 + G-rich Low_complexity Low_complexity 3 113 0 360 172 73 0 chr12 59106460 59106611 -84679844 + GA-rich Low_complexity Low_complexity 1 162 0 344 249 19 23 chr12 59106632 59107126 -84679329 + GA-rich Low_complexity Low_complexity 1 492 0 941 128 0 21 chr12 59107284 59107425 -84679030 - AluSg/x SINE Alu -6 306 169 1469 184 0 8 chr12 59107429 59107679 -84678776 - AluJb SINE Alu -64 248 1 764 199 75 58 chr12 59107967 59108193 -84678262 - MIR SINE MIR 0 262 33 2258 107 23 0 chr12 59108208 59108507 -84677948 - AluSp SINE Alu -5 308 3 730 129 113 16 chr12 59108508 59108632 -84677823 - AluSq/x SINE Alu -175 137 2 1604 186 22 22 chr12 59108749 59108926 -84677529 - AluJb SINE Alu 0 312 133 282 29 0 0 chr12 59108926 59108961 -84677494 + (TG)n Simple_repeat Simple_repeat 2 36 0 1604 186 22 22 chr12 59108961 59109095 -84677360 - AluJb SINE Alu -178 134 1 2382 73 0 0 chr12 59109103 59109432 -84677023 - AluSc SINE Alu 0 329 1 2483 68 7 0 chr12 59109434 59109742 -84676713 - AluY SINE Alu -1 310 1 1183 59 0 0 chr12 59109742 59109877 -84676578 - AluSq/x SINE Alu -177 135 1 1800 108 0 8 chr12 59112112 59112352 -84674103 - AluSx SINE Alu -74 238 1 22 80 0 0 chr12 59113346 59113396 -84673059 + AT_rich Low_complexity Low_complexity 1 50 0 422 172 172 0 chr12 59114261 59114348 -84672107 + FLAM_A SINE Alu 1 102 -40 2062 129 3 7 chr12 59114382 59114684 -84671771 + AluSg SINE Alu 1 301 -9 282 167 0 0 chr12 59114785 59114827 -84671628 + Alu SINE Alu 1 42 -261 2124 85 3 43 chr12 59114827 59115132 -84671323 + AluY SINE Alu 1 293 -18 2142 107 19 10 chr12 59115283 59115592 -84670863 - AluSq SINE Alu 0 313 2 282 167 0 0 chr12 59115864 59115906 -84670549 + Alu SINE Alu 1 42 -259 1918 125 14 10 chr12 59115906 59116203 -84670252 + AluY SINE Alu 1 298 -13 2276 99 7 0 chr12 59116640 59116942 -84669513 - AluSg SINE Alu -5 305 2 26 0 0 0 chr12 59117414 59117440 -84669015 + AT_rich Low_complexity Low_complexity 1 26 0 2181 117 13 0 chr12 59117519 59117819 -84668636 - AluSx SINE Alu -8 304 1 603 131 28 19 chr12 59118316 59118423 -84668032 - FLAM_A SINE Alu -16 126 19 230 170 0 19 chr12 59121414 59121467 -84664988 + (CCG)n Simple_repeat Simple_repeat 2 53 0 1768 145 43 16 chr12 59122401 59122705 -84663750 + AluSx SINE Alu 1 312 0 420 289 48 42 chr12 59124844 59124962 -84661493 + MIR3 SINE MIR 42 163 -45 2457 90 0 0 chr12 59124962 59125263 -84661192 - AluSg SINE Alu -9 301 1 420 289 48 42 chr12 59125263 59125310 -84661145 + MIR3 SINE MIR 163 208 0 2299 102 16 0 chr12 59128185 59128537 -84657918 - AluSq SINE Alu 0 357 1 2124 148 0 3 chr12 59128584 59128894 -84657561 - AluJb SINE Alu -3 309 1 2022 107 66 0 chr12 59128942 59129231 -84657224 - AluSg SINE Alu -2 308 1 1548 49 0 0 chr12 59130538 59130723 -84655732 - AluY SINE Alu -9 302 118 24 0 0 0 chr12 59131357 59131381 -84655074 + AT_rich Low_complexity Low_complexity 1 24 0 1058 182 0 0 chr12 59131400 59131565 -84654890 - AluSg/x SINE Alu -14 296 132 1168 90 164 25 chr12 59131642 59131843 -84654612 - MER30 DNA MER1_type 0 230 2 1272 224 118 0 chr12 59131927 59132190 -84654265 - AluJo SINE Alu -18 294 1 1759 174 3 52 chr12 59132380 59132559 -84653896 - AluJb SINE Alu -1 311 154 2367 88 0 3 chr12 59132559 59132856 -84653599 - AluSq SINE Alu -17 296 1 1759 174 3 52 chr12 59132856 59133003 -84653452 - AluJb SINE Alu -158 154 1 1942 99 0 0 chr12 59133034 59133276 -84653179 - AluSq SINE Alu -17 296 55 2404 84 3 7 chr12 59135717 59136027 -84650428 + AluSc SINE Alu 1 309 0 564 125 12 0 chr12 59138406 59138486 -84647969 - FLAM SINE Alu -22 121 41 2349 100 0 0 chr12 59138996 59139287 -84647168 + AluSx SINE Alu 1 291 -21 864 198 0 48 chr12 59142572 59142739 -84643716 + FRAM SINE Alu 1 158 -18 2322 103 0 19 chr12 59142741 59143051 -84643404 + AluSc SINE Alu 1 304 -5 2313 84 3 0 chr12 59143051 59143364 -84643091 + AluSp SINE Alu 1 315 0 2405 87 3 0 chr12 59143529 59143827 -84642628 - AluY SINE Alu -12 299 1 2362 79 24 0 chr12 59143828 59144120 -84642335 - AluSp SINE Alu -14 299 1 2049 125 0 0 chr12 59144248 59144535 -84641920 + AluY SINE Alu 1 287 -24 310 278 31 0 chr12 59145858 59145955 -84640500 + GA-rich Low_complexity Low_complexity 2 101 0 2161 135 3 0 chr12 59146198 59146495 -84639960 + AluJo SINE Alu 1 298 -14 255 337 0 0 chr12 59146906 59147004 -84639451 + T-rich Low_complexity Low_complexity 1 98 0 2362 102 0 0 chr12 59147894 59148188 -84638267 - AluSx SINE Alu -18 294 1 1662 144 72 4 chr12 59148636 59148914 -84637541 - AluJo SINE Alu -11 301 5 580 232 209 18 chr12 59149303 59149523 -84636932 + MIR SINE MIR 1 262 0 238 221 12 12 chr12 59149942 59150028 -84636427 + (CCCCAG)n Simple_repeat Simple_repeat 4 89 0 267 240 99 68 chr12 59152290 59152436 -84634019 + MIR SINE MIR 20 180 -63 472 159 0 16 chr12 59154245 59154371 -84632084 + (TG)n Simple_repeat Simple_repeat 1 124 0 21 0 0 0 chr12 59156340 59156361 -84630094 + AT_rich Low_complexity Low_complexity 1 21 0 2345 111 0 0 chr12 59158083 59158389 -84628066 + AluSx SINE Alu 1 306 -6 1076 107 0 0 chr12 59158396 59158536 -84627919 + AluJb SINE Alu 1 140 -172 1470 135 0 58 chr12 59158540 59158799 -84627656 + AluJb SINE Alu 67 310 -2 1586 201 10 7 chr12 59158826 59159119 -84627336 + AluJo SINE Alu 3 296 -16 2553 69 0 0 chr12 59159119 59159423 -84627032 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr12 59160128 59160157 -84626298 + AT_rich Low_complexity Low_complexity 1 29 0 892 200 91 48 chr12 59161395 59161605 -84624850 - MER20 DNA MER1_type 0 219 1 816 69 29 0 chr12 59163310 59163412 -84623043 - U6 snRNA snRNA -2 105 1 553 181 159 14 chr12 59163666 59163804 -84622651 - MER5B DNA MER1_type 0 178 21 2386 101 0 3 chr12 59164648 59164946 -84621509 - AluSq SINE Alu -16 297 1 582 170 0 0 chr12 59165271 59165371 -84621084 + FRAM SINE Alu 72 171 -5 604 133 183 0 chr12 59165372 59165492 -84620963 + L1MB7 LINE L1 5332 5473 -701 337 127 0 0 chr12 59165492 59165547 -84620908 - AluJb SINE Alu -2 298 244 1142 112 5 75 chr12 59165547 59165587 -84620868 - AluJb SINE Alu -138 174 133 2414 74 0 14 chr12 59165587 59165883 -84620572 - AluY SINE Alu -19 292 1 1142 112 5 75 chr12 59165883 59166029 -84620426 - AluJb SINE Alu -179 133 1 2320 124 77 77 chr12 59166029 59166552 -84619903 + L1MB7 LINE L1 5461 5983 -201 287 264 83 0 chr12 59166629 59166750 -84619705 + L1M4 LINE L1 4912 5042 -1104 2135 113 3 0 chr12 59166807 59167112 -84619343 + AluSx SINE Alu 1 306 0 781 191 15 0 chr12 59167116 59167247 -84619208 - MER5A DNA MER1_type -56 133 1 2204 106 0 0 chr12 59169243 59169546 -84616909 + AluSx SINE Alu 2 304 -8 2157 103 0 13 chr12 59169546 59169857 -84616598 + AluSc SINE Alu 1 307 -2 219 258 82 41 chr12 59169863 59169960 -84616495 + MIR SINE MIR 106 206 -56 2277 70 0 13 chr12 59170127 59170428 -84616027 - AluY SINE Alu -14 297 1 990 223 74 57 chr12 59170671 59170795 -84615660 + Charlie2 DNA MER1_type 1905 2025 -837 2107 117 3 0 chr12 59170795 59171094 -84615361 - AluSx SINE Alu -12 300 1 990 223 74 57 chr12 59171094 59171336 -84615119 + Charlie2 DNA MER1_type 2025 2277 -585 2140 116 0 0 chr12 59171348 59171649 -84614806 + AluSx SINE Alu 1 301 -11 767 163 15 15 chr12 59171654 59171789 -84614666 + AluJ SINE Alu 2 136 -176 1907 131 3 19 chr12 59171789 59172103 -84614352 + AluSx SINE Alu 1 309 -3 854 195 0 0 chr12 59172130 59172320 -84614135 + AluJ SINE Alu 129 318 0 2000 119 0 22 chr12 59172337 59172655 -84613800 - AluSq SINE Alu -2 311 1 558 130 46 176 chr12 59172705 59172721 -84613734 + Charlie2 DNA MER1_type 2399 2415 -447 2049 120 17 7 chr12 59172721 59173020 -84613435 - AluSx SINE Alu -10 302 1 558 130 46 176 chr12 59173020 59173219 -84613236 + Charlie2 DNA MER1_type 2415 2586 -276 711 122 0 0 chr12 59173221 59173319 -84613136 - Tigger7 DNA MER2_type -1 2586 2489 1141 183 124 33 chr12 59173319 59173418 -84613037 - Tigger7 DNA MER2_type -2223 264 175 1906 155 3 0 chr12 59173418 59173721 -84612734 - AluSx SINE Alu -8 304 1 1141 183 124 33 chr12 59173721 59173862 -84612593 - Tigger7 DNA MER2_type -2312 175 2 2307 87 3 0 chr12 59173865 59174164 -84612291 - AluSp SINE Alu -13 300 1 21 0 0 0 chr12 59174174 59174195 -84612260 + AT_rich Low_complexity Low_complexity 1 21 0 1600 140 4 30 chr12 59174330 59174594 -84611861 - AluJb SINE Alu -20 292 36 2102 68 3 68 chr12 59174598 59174909 -84611546 - AluSx SINE Alu -21 291 1 450 307 114 6 chr12 59175352 59175518 -84610937 + MIR SINE MIR 31 214 -48 790 183 0 0 chr12 59175614 59175740 -84610715 + FLAM_A SINE Alu 1 126 -7 1788 95 84 4 chr12 59175989 59176287 -84610168 - AluSx SINE Alu 0 319 1 433 333 116 56 chr12 59176559 59176648 -84609807 - L2 LINE L2 -564 2750 2668 1688 162 7 0 chr12 59176648 59176926 -84609529 + AluJb SINE Alu 17 296 -16 433 333 116 56 chr12 59176926 59177087 -84609368 - L2 LINE L2 -646 2668 2518 2262 75 31 0 chr12 59177087 59177379 -84609076 - AluSp SINE Alu -12 301 1 2379 78 13 0 chr12 59177383 59177692 -84608763 - AluSp SINE Alu 0 313 1 433 333 116 56 chr12 59177692 59178080 -84608375 - L2 LINE L2 -798 2516 2067 674 180 67 27 chr12 59178127 59178277 -84608178 + AluJb SINE Alu 139 294 -18 232 331 30 85 chr12 59178457 59178640 -84607815 - L2 LINE L2 -1863 1451 1260 2226 94 3 0 chr12 59178640 59178939 -84607516 + AluSg SINE Alu 1 300 -10 232 331 30 85 chr12 59178939 59178999 -84607456 - L2 LINE L2 -2054 1260 1198 4959 168 30 56 chr12 59178999 59180099 -84606356 - MER11C LTR ERVK 0 1071 1 232 331 30 85 chr12 59180099 59180256 -84606199 - L2 LINE L2 -2116 1198 1072 216 343 70 14 chr12 59180476 59180619 -84605836 + L2 LINE L2 2919 3069 -244 2215 92 3 7 chr12 59180727 59181031 -84605424 - AluSg SINE Alu -7 303 1 1859 161 0 16 chr12 59181183 59181493 -84604962 - AluJb SINE Alu -7 305 1 1013 229 81 35 chr12 59181538 59181715 -84604740 - MER5C DNA MER1_type 0 324 126 1847 124 10 10 chr12 59181715 59182006 -84604449 + AluSx SINE Alu 1 291 -21 1013 229 81 35 chr12 59182006 59182138 -84604317 - MER5C DNA MER1_type -198 126 1 425 245 82 27 chr12 59182138 59182284 -84604171 - MIR SINE MIR -55 207 54 2256 102 0 0 chr12 59182396 59182699 -84603756 + AluSg SINE Alu 1 303 -7 458 77 15 0 chr12 59183071 59183136 -84603319 - L1MB7 LINE L1 -8 6176 6111 958 222 9 22 chr12 59183136 59183366 -84603089 + AluJo SINE Alu 2 228 -84 260 216 6 187 chr12 59183488 59183525 -84602930 - L1ME LINE L1 -524 5640 5598 1814 134 60 0 chr12 59183525 59183808 -84602647 + AluSx SINE Alu 1 300 -12 260 216 6 187 chr12 59183808 59183873 -84602582 - L1ME LINE L1 -566 5598 5523 1815 168 0 0 chr12 59183873 59184170 -84602285 + AluJb SINE Alu 5 301 -11 260 216 6 187 chr12 59184170 59184211 -84602244 - L1ME LINE L1 -641 5523 5528 2300 86 0 3 chr12 59184211 59184512 -84601943 - AluSq SINE Alu -13 300 1 260 216 6 187 chr12 59184512 59184537 -84601918 - L1ME LINE L1 -635 5529 5501 431 314 0 9 chr12 59186800 59186905 -84599550 + MIR SINE MIR 30 133 -75 463 258 169 25 chr12 59188121 59188319 -84598136 + MIR SINE MIR 24 258 -4 2897 92 35 39 chr12 59188372 59188806 -84597649 + L1MB2 LINE L1 5686 6119 -52 1854 95 0 82 chr12 59188806 59189121 -84597334 - AluSg SINE Alu -21 289 1 2897 92 35 39 chr12 59189121 59189173 -84597282 + L1MB2 LINE L1 6119 6170 -1 991 132 13 0 chr12 59190812 59190964 -84595491 - FAM SINE Alu -11 174 21 2313 68 0 13 chr12 59192115 59192424 -84594031 - AluSg SINE Alu -5 305 1 211 28 56 0 chr12 59192426 59192462 -84593993 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2143 74 0 0 chr12 59192462 59192745 -84593710 - AluSx SINE Alu -29 283 1 239 319 96 36 chr12 59192940 59193106 -84593349 + L2 LINE L2 2915 3090 -182 420 296 40 8 chr12 59193161 59193286 -84593169 - L2 LINE L2 -10 3262 3134 290 229 43 29 chr12 59193543 59193613 -84592842 - MER5A DNA MER1_type -26 163 93 1274 113 5 0 chr12 59193678 59193863 -84592592 + AluSg/x SINE Alu 121 306 -6 1939 94 79 4 chr12 59194042 59194319 -84592136 - AluSq SINE Alu -15 298 1 1600 140 4 30 chr12 59194764 59195028 -84591427 - AluJb SINE Alu -20 292 36 2063 68 3 71 chr12 59195032 59195343 -84591112 - AluY SINE Alu -21 290 1 792 203 37 14 chr12 59195347 59195564 -84590891 + Charlie2 DNA MER1_type 2604 2825 -37 1911 218 53 13 chr12 59195568 59196022 -84590433 + MER119 DNA MER1_type 1 472 -111 921 126 0 0 chr12 59196069 59196196 -84590259 + FLAM_C SINE Alu 1 127 -6 2314 93 0 0 chr12 59196251 59196553 -84589902 - AluSx SINE Alu -10 302 1 2281 88 0 0 chr12 59197683 59197990 -84588465 + AluY SINE Alu 1 307 -4 2022 125 23 0 chr12 59199730 59200033 -84586422 + AluSx SINE Alu 1 310 -2 705 249 162 10 chr12 59200395 59200592 -84585863 + MIR SINE MIR 36 262 0 1568 162 26 4 chr12 59200733 59201005 -84585450 - AluJo SINE Alu -34 278 1 2323 84 0 0 chr12 59201075 59201456 -84584999 - AluSq SINE Alu 0 381 1 1288 121 37 55 chr12 59201491 59201723 -84584732 + LTR37B LTR ERV1 198 426 -42 2144 100 3 3 chr12 59201723 59202023 -84584432 - AluSq SINE Alu -13 300 1 1288 121 37 55 chr12 59202023 59202063 -84584392 + LTR37B LTR ERV1 426 465 -3 796 137 0 0 chr12 59203193 59203324 -84583131 + L1PA13 LINE L1 6026 6156 -7 1264 91 5 11 chr12 59203332 59203518 -84582937 - MER2 DNA MER2_type -71 274 90 532 145 0 0 chr12 59203518 59203623 -84582832 - AluSg/x SINE Alu 0 308 204 1762 115 0 0 chr12 59203623 59203867 -84582588 - AluSq SINE Alu -69 244 1 426 108 0 217 chr12 59203867 59203895 -84582560 - MER2 DNA MER2_type -248 97 65 1676 172 21 3 chr12 59203895 59204186 -84582269 + AluJb SINE Alu 1 296 -16 426 108 0 217 chr12 59204186 59204277 -84582178 - MER2 DNA MER2_type -280 65 4 1207 113 11 22 chr12 59204314 59204499 -84581956 + AluSx SINE Alu 6 188 -124 30 0 0 0 chr12 59204743 59204773 -84581682 + AT_rich Low_complexity Low_complexity 1 30 0 908 139 0 0 chr12 59204774 59204903 -84581552 - FLAM_C SINE Alu -14 129 1 2366 75 0 3 chr12 59205413 59205718 -84580737 - AluY SINE Alu -7 304 1 694 154 82 0 chr12 59205816 59205926 -84580529 + FLAM_A SINE Alu 1 119 -14 2092 71 0 4 chr12 59206451 59206717 -84579738 + AluY SINE Alu 1 265 -46 1824 123 3 45 chr12 59206738 59207047 -84579408 + AluSg SINE Alu 1 296 -14 5086 104 1 13 chr12 59207047 59207796 -84578659 + L1PA13 LINE L1 5420 6159 -4 975 126 0 0 chr12 59207863 59207998 -84578457 + AluJo SINE Alu 3 137 -175 1943 113 14 3 chr12 59208002 59208294 -84578161 + AluSx SINE Alu 1 295 -17 2171 84 0 20 chr12 59208360 59208659 -84577796 + AluSx SINE Alu 1 293 -19 704 191 0 0 chr12 59208820 59208946 -84577509 + FLAM_A SINE Alu 5 130 -3 1620 176 3 37 chr12 59208946 59209269 -84577186 + AluJb SINE Alu 1 312 0 237 132 0 0 chr12 59209269 59209307 -84577148 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 2120 112 3 0 chr12 59209511 59209806 -84576649 + AluSx SINE Alu 11 306 -6 2193 92 3 10 chr12 59209806 59210112 -84576343 + AluY SINE Alu 1 304 -7 2407 71 3 3 chr12 59210114 59210425 -84576030 + AluSp SINE Alu 3 313 0 215 333 16 0 chr12 59211198 59211261 -84575194 + L2 LINE L2 3153 3216 -56 2220 100 0 3 chr12 59211475 59211774 -84574681 + AluSx SINE Alu 1 298 -14 771 105 57 32 chr12 59211899 59212023 -84574432 - FLAM_C SINE Alu -9 134 8 1037 143 6 12 chr12 59212090 59212258 -84574197 - FRAM SINE Alu -16 160 1 1682 130 48 4 chr12 59212269 59212539 -84573916 + AluSx SINE Alu 9 290 -22 332 262 63 56 chr12 59212669 59212795 -84573660 + L2 LINE L2 3185 3311 -2 2147 109 0 3 chr12 59213062 59213356 -84573099 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr12 59213380 59213404 -84573051 + AT_rich Low_complexity Low_complexity 1 24 0 2287 59 14 0 chr12 59213972 59214259 -84572196 + AluY SINE Alu 9 299 -12 908 181 150 16 chr12 59214630 59214823 -84571632 + MER20 DNA MER1_type 1 219 0 495 177 186 18 chr12 59214990 59215103 -84571352 + AluJo SINE Alu 2 133 -179 255 354 0 0 chr12 59215447 59215526 -84570929 + L2 LINE L2 3193 3271 -1 668 205 0 8 chr12 59215764 59215891 -84570564 + AluJo SINE Alu 121 246 -66 2188 89 13 0 chr12 59216156 59216460 -84569995 - AluSq SINE Alu -5 308 1 2043 96 0 3 chr12 59216613 59216905 -84569550 + AluY SINE Alu 13 303 -8 425 240 31 0 chr12 59216910 59217006 -84569449 - L2 LINE L2 -1394 1920 1822 826 286 45 43 chr12 59217006 59217426 -84569029 + L1ME3A LINE L1 5477 5897 -273 676 220 168 6 chr12 59217451 59217624 -84568831 + MIR SINE MIR 1 201 -61 22 56 0 0 chr12 59217626 59217662 -84568793 + AT_rich Low_complexity Low_complexity 1 36 0 382 179 60 0 chr12 59217735 59217802 -84568653 + L1M3f LINE L1 2 72 -5256 2263 132 0 0 chr12 59217828 59218139 -84568316 + AluSx SINE Alu 2 312 0 1929 147 0 3 chr12 59218147 59218439 -84568016 + AluJo SINE Alu 1 291 -21 1119 141 0 0 chr12 59218442 59218598 -84567857 + AluJb SINE Alu 129 313 0 262 0 0 0 chr12 59218598 59218627 -84567828 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 377 212 55 116 chr12 59218841 59218972 -84567483 - L2 LINE L2 -1480 1834 1711 2350 95 3 13 chr12 59218972 59219288 -84567167 - AluSq SINE Alu 0 313 1 377 212 55 116 chr12 59219288 59219302 -84567153 - L2 LINE L2 -1603 1711 1698 1995 126 11 7 chr12 59219325 59219611 -84566844 - AluSq SINE Alu -26 287 1 254 310 28 35 chr12 59219680 59219715 -84566740 - MIR SINE MIR -77 185 151 2078 87 42 7 chr12 59219715 59220003 -84566452 - AluSg SINE Alu -12 298 1 254 310 28 35 chr12 59220003 59220112 -84566343 - MIR SINE MIR -111 151 42 230 337 40 35 chr12 59220249 59220448 -84566007 - L2 LINE L2 -3 3310 3111 2057 153 3 0 chr12 59220890 59221197 -84565258 + AluJb SINE Alu 1 308 -4 214 225 0 56 chr12 59221200 59221271 -84565184 + L2 LINE L2 1700 1766 -1548 3667 122 44 42 chr12 59221278 59221341 -84565114 - L1MB8 LINE L1 -5 6173 6112 1856 127 34 27 chr12 59221341 59221633 -84564822 + AluJo SINE Alu 1 294 -18 3667 122 44 42 chr12 59221633 59221920 -84564535 - L1MB8 LINE L1 -66 6112 5827 1717 152 19 51 chr12 59221920 59222278 -84564177 - AluJb SINE Alu 0 312 1 3667 122 44 42 chr12 59222278 59222591 -84563864 - L1MB8 LINE L1 -351 5827 5508 1392 134 35 30 chr12 59222605 59222836 -84563619 - AluJb SINE Alu -12 300 69 675 167 49 2 chr12 59222894 59223061 -84563394 - L1MB8 LINE L1 -689 5495 5308 312 353 30 0 chr12 59223083 59223250 -84563205 + L2 LINE L2 1777 1948 -1366 1960 154 3 3 chr12 59223284 59223582 -84562873 - AluJb SINE Alu -14 298 1 2262 115 0 6 chr12 59223906 59224220 -84562235 - AluSq SINE Alu -1 312 1 2076 121 0 0 chr12 59225207 59225512 -84560943 - AluSx SINE Alu 0 319 15 2255 101 0 3 chr12 59225592 59225890 -84560565 + AluSx SINE Alu 5 301 -11 514 231 0 0 chr12 59225906 59226010 -84560445 + FRAM SINE Alu 44 147 -29 180 0 0 0 chr12 59226010 59226030 -84560425 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1871 146 7 0 chr12 59226031 59226339 -84560116 + AluSx SINE Alu 1 310 0 25 31 0 0 chr12 59226495 59226527 -84559928 + AT_rich Low_complexity Low_complexity 1 32 0 2350 86 0 13 chr12 59226529 59226832 -84559623 + AluSx SINE Alu 1 299 -13 2031 122 20 10 chr12 59226836 59227140 -84559315 + AluSx SINE Alu 1 307 -5 229 219 37 12 chr12 59227664 59227746 -84558709 + (TA)n Simple_repeat Simple_repeat 2 85 0 1986 111 74 0 chr12 59227781 59228052 -84558403 - AluSx SINE Alu -21 291 1 970 244 50 21 chr12 59228077 59228360 -84558095 - L1MA9 LINE L1 -38 6274 5984 356 248 0 16 chr12 59229541 59229670 -84556785 + GA-rich Low_complexity Low_complexity 4 130 0 216 0 0 0 chr12 59230026 59230050 -84556405 + (A)n Simple_repeat Simple_repeat 1 24 0 2049 110 30 23 chr12 59230107 59230407 -84556048 - AluSx SINE Alu -10 302 1 2076 99 46 7 chr12 59231419 59231703 -84554752 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 59231704 59231724 -84554731 + (TA)n Simple_repeat Simple_repeat 2 21 0 2249 122 3 0 chr12 59231902 59232213 -84554242 - AluSx SINE Alu 0 312 1 1468 156 0 78 chr12 59232371 59232666 -84553789 - AluJb SINE Alu -21 291 20 1626 192 0 7 chr12 59233067 59233353 -84553102 + AluJb SINE Alu 29 312 0 2474 85 0 0 chr12 59233675 59233970 -84552485 + AluSx SINE Alu 1 295 -17 305 170 0 149 chr12 59234681 59234775 -84551680 - MER116 DNA Mariner 0 80 1 312 324 9 9 chr12 59234853 59234961 -84551494 - MIR SINE MIR -59 149 42 2397 106 0 0 chr12 59234965 59235276 -84551179 - AluSx SINE Alu -1 311 1 2198 103 3 3 chr12 59235690 59235980 -84550475 + AluSx SINE Alu 1 290 -22 372 272 64 32 chr12 59236109 59236234 -84550221 + L2 LINE L2 3185 3313 0 2411 80 0 7 chr12 59236294 59236593 -84549862 + AluY SINE Alu 1 297 -14 1156 158 0 51 chr12 59236708 59236923 -84549532 - AluJo SINE Alu -108 204 1 2132 130 3 0 chr12 59237115 59237408 -84549047 - AluSx SINE Alu -18 294 1 205 294 59 0 chr12 59237782 59237867 -84548588 + MIR SINE MIR 71 160 -102 1026 184 0 0 chr12 59238185 59238359 -84548096 - AluJb SINE Alu -7 305 132 23 54 0 0 chr12 59238359 59238396 -84548059 + AT_rich Low_complexity Low_complexity 1 37 0 2236 169 48 12 chr12 59240232 59240653 -84545802 + MER52C-int LTR ERV1 702 1137 -6679 1054 89 13 6 chr12 59240670 59240828 -84545627 + HERVL LTR ERVL 5469 5627 -27 183 156 0 0 chr12 59240829 59240861 -84545594 + (TA)n Simple_repeat Simple_repeat 2 33 0 2906 89 20 8 chr12 59240864 59241258 -84545197 - MLT2A1 LTR ERVL -45 399 1 28827 63 16 7 chr12 59241258 59244684 -84541771 - HERVL-A1 LTR ERVL 0 5654 2123 8215 52 6 1 chr12 59244684 59245644 -84540811 + LTR5 LTR ERVK 1 965 -4 28827 63 16 7 chr12 59245644 59247482 -84538973 - HERVL-A1 LTR ERVL -3531 2123 303 1684 182 138 47 chr12 59247498 59247992 -84538463 + MER52C-int LTR ERV1 2464 3002 -2215 348 80 40 0 chr12 59247998 59248048 -84538407 + MER52C-int LTR ERV1 5977 6028 -1177 * 1288 138 32 0 chr12 59248046 59248234 -84538221 + MER52C-int LTR ERV1 6892 7085 -6 6077 132 156 23 chr12 59248240 59249353 -84537102 + MER52C LTR ERV1 1 1261 -17 225 200 0 44 chr12 59249359 59249404 -84537051 - Alu SINE Alu -133 167 125 2122 112 7 13 chr12 59249413 59249717 -84536738 - AluSx SINE Alu -10 302 1 1870 163 0 13 chr12 59249755 59250061 -84536394 - AluSx SINE Alu -10 302 1 887 137 8 0 chr12 59250103 59250234 -84536221 + AluY SINE Alu 1 132 -179 24 32 0 0 chr12 59250234 59250265 -84536190 + AT_rich Low_complexity Low_complexity 1 31 0 267 141 62 45 chr12 59250268 59250445 -84536010 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 1354 73 0 0 chr12 59250459 59250623 -84535832 + AluY SINE Alu 142 305 -6 1010 186 6 0 chr12 59250635 59250802 -84535653 + FRAM SINE Alu 1 168 -8 2346 175 19 46 chr12 59250804 59251346 -84535109 + L1MB8 LINE L1 5652 6178 0 3346 86 2 4 chr12 59251359 59251811 -84534644 + L1PB2 LINE L1 5694 6144 -7 1332 198 34 44 chr12 59251842 59252140 -84534315 + AluJb SINE Alu 1 295 -17 2229 107 0 0 chr12 59252451 59252740 -84533715 - AluSg SINE Alu -21 289 1 294 146 0 0 chr12 59252770 59252811 -84533644 + Alu SINE Alu 3 43 -256 1100 172 16 0 chr12 59252967 59253153 -84533302 + AluSg/x SINE Alu 108 296 -16 722 188 0 0 chr12 59253157 59253274 -84533181 - FLAM_C SINE Alu -25 118 2 1353 106 0 0 chr12 59253281 59253461 -84532994 - AluSp SINE Alu -4 309 130 604 293 78 11 chr12 59253680 59253950 -84532505 + L1MC4a LINE L1 5603 5890 -1918 30 27 0 0 chr12 59253972 59254009 -84532446 + AT_rich Low_complexity Low_complexity 1 37 0 2977 115 32 0 chr12 59254011 59254445 -84532010 - L1PA10 LINE L1 -11 6157 5710 2317 118 0 0 chr12 59254624 59254928 -84531527 + AluSx SINE Alu 1 304 -8 973 123 0 22 chr12 59254981 59255119 -84531336 + AluJ SINE Alu 2 136 -176 1946 132 4 0 chr12 59255119 59255385 -84531070 + AluSx SINE Alu 1 267 -45 510 191 0 0 chr12 59255414 59255498 -84530957 + AluJ SINE Alu 120 203 -109 2176 99 41 0 chr12 59255530 59255822 -84530633 + AluSx SINE Alu 1 304 -8 1743 146 61 0 chr12 59255888 59256168 -84530287 - AluJb SINE Alu -15 297 1 2043 105 4 0 chr12 59256672 59256939 -84529516 - AluSx SINE Alu -44 268 1 256 331 35 7 chr12 59257083 59257225 -84529230 + L2 LINE L2 2619 2764 -550 1687 124 64 8 chr12 59257601 59257850 -84528605 - AluJo SINE Alu -6 306 44 2190 137 0 3 chr12 59257873 59258186 -84528269 - AluSx SINE Alu 0 312 1 1988 158 3 16 chr12 59258186 59258497 -84527958 - AluJb SINE Alu -5 307 1 2314 84 7 3 chr12 59258703 59259000 -84527455 - AluSp SINE Alu -15 298 1 1844 145 47 0 chr12 59259450 59259746 -84526709 + AluSx SINE Alu 1 310 -2 225 167 93 19 chr12 59259910 59259964 -84526491 + L2 LINE L2 3255 3312 -1 2142 101 13 19 chr12 59260276 59260583 -84525872 - AluSq SINE Alu -8 305 1 1389 186 29 29 chr12 59260607 59260881 -84525574 + L1MB8 LINE L1 5406 5679 -505 1343 135 5 10 chr12 59260882 59261082 -84525373 + AluSx SINE Alu 1 199 -113 529 75 0 0 chr12 59261083 59261150 -84525305 + AluY SINE Alu 66 132 -179 23 33 0 0 chr12 59261150 59261180 -84525275 + AT_rich Low_complexity Low_complexity 1 30 0 267 141 62 45 chr12 59261183 59261360 -84525095 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 1354 73 0 0 chr12 59261374 59261538 -84524917 + AluY SINE Alu 142 305 -6 997 191 6 0 chr12 59261550 59261718 -84524737 + FRAM SINE Alu 1 169 -7 2364 173 19 46 chr12 59261720 59262262 -84524193 + L1MB8 LINE L1 5652 6178 0 3376 87 2 2 chr12 59262275 59262726 -84523729 + L1PB2 LINE L1 5694 6144 -7 1045 102 0 72 chr12 59262758 59262925 -84523530 + AluSg/x SINE Alu 137 291 -21 1232 181 133 15 chr12 59262937 59263232 -84523223 + AluSx SINE Alu 1 302 0 1801 182 0 3 chr12 59263260 59263573 -84522882 + AluJo SINE Alu 1 312 0 1752 142 10 61 chr12 59263745 59264056 -84522399 + AluJb SINE Alu 1 295 -17 25 31 0 0 chr12 59264123 59264155 -84522300 + AT_rich Low_complexity Low_complexity 1 32 0 2008 162 0 0 chr12 59264996 59265293 -84521162 - AluJo SINE Alu -15 297 1 367 280 160 8 chr12 59265295 59265420 -84521035 + MIR SINE MIR 45 188 -74 1577 174 11 32 chr12 59265432 59265714 -84520741 + AluJo SINE Alu 1 276 -36 237 197 0 0 chr12 59265723 59265789 -84520666 + (CATA)n Simple_repeat Simple_repeat 2 67 0 465 296 160 52 chr12 59265832 59266238 -84520217 - L2 LINE L2 0 3313 2864 954 84 0 30 chr12 59266314 59266445 -84520010 + AluSp/q SINE Alu 173 299 -14 765 249 62 19 chr12 59266485 59266742 -84519713 + HAL1 LINE L1 2014 2281 -226 2280 108 0 3 chr12 59266795 59267092 -84519363 + AluSx SINE Alu 1 296 -16 1254 172 19 34 chr12 59267101 59267325 -84519130 + L1MB2 LINE L1 4330 4551 -1595 2403 62 16 33 chr12 59267325 59267632 -84518823 + AluSg SINE Alu 1 302 -8 1254 172 19 34 chr12 59267632 59267675 -84518780 + L1MB2 LINE L1 4551 4593 -1553 243 245 0 0 chr12 59267677 59267726 -84518729 + Alu SINE Alu 117 165 -138 2132 116 0 3 chr12 59267765 59268072 -84518383 + AluSq SINE Alu 1 306 0 3993 127 60 49 chr12 59268074 59268868 -84517587 + L1MB2 LINE L1 5319 6123 -48 2221 116 0 13 chr12 59268868 59269170 -84517285 + AluSx SINE Alu 1 298 -14 3993 127 60 49 chr12 59269170 59269218 -84517237 + L1MB2 LINE L1 6123 6169 -2 2210 120 0 3 chr12 59269226 59269535 -84516920 + AluSg SINE Alu 1 308 -2 323 133 0 17 chr12 59269535 59269595 -84516860 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 1083 113 7 0 chr12 59269669 59269811 -84516644 + AluJb SINE Alu 1 143 -169 331 135 0 0 chr12 59269812 59269864 -84516591 - AluS SINE Alu -222 80 29 2331 109 3 13 chr12 59269864 59270176 -84516279 - AluSq SINE Alu -2 311 3 189 233 23 0 chr12 59270176 59270219 -84516236 - MIR SINE MIR -1 261 218 1834 246 20 55 chr12 59270260 59270580 -84515875 - L2 LINE L2 -815 2499 2204 1203 286 3 0 chr12 59270580 59270877 -84515578 - AluSx SINE Alu 0 302 5 1834 246 20 55 chr12 59270877 59271105 -84515350 - L2 LINE L2 -1110 2204 1970 2203 105 3 3 chr12 59272180 59272476 -84513979 + AluSq SINE Alu 7 302 -11 412 258 181 11 chr12 59272659 59272841 -84513614 + MIR SINE MIR 50 262 0 194 227 30 91 chr12 59272837 59272903 -84513552 - L2 LINE L2 -18 3254 3193 * 2163 100 0 59 chr12 59275199 59275519 -84510936 - AluSx SINE Alu -11 301 1 2066 87 102 0 chr12 59276043 59276318 -84510137 - AluSx SINE Alu -9 303 1 752 104 37 15 chr12 59276364 59276499 -84509956 + L1MA5A LINE L1 6156 6293 -4 1964 154 0 26 chr12 59276512 59276818 -84509637 + AluJb SINE Alu 1 298 -14 524 284 213 0 chr12 59276848 59277073 -84509382 - L1ME4a LINE L1 -95 6026 5754 372 240 133 50 chr12 59277133 59277349 -84509106 - L1MC4a LINE L1 -1778 6030 5842 1318 160 53 23 chr12 59277846 59278109 -84508346 + MER52C-int LTR ERV1 3341 3611 -3926 * 2377 161 37 20 chr12 59278087 59278575 -84507880 + MER52C-int LTR ERV1 592 1137 -6679 996 89 13 6 chr12 59278592 59278750 -84507705 + HERVL LTR ERVL 5469 5627 -27 183 156 0 0 chr12 59278751 59278783 -84507672 + (TA)n Simple_repeat Simple_repeat 2 33 0 2751 89 20 8 chr12 59278786 59279180 -84507275 - MLT2A1 LTR ERVL -45 399 1 25421 61 36 26 chr12 59279180 59282603 -84503852 - HERVL-A1 LTR ERVL 0 5654 2265 8455 52 4 0 chr12 59282603 59283564 -84502891 + LTR5 LTR ERVK 1 965 -4 25421 61 36 26 chr12 59283564 59284868 -84501587 - HERVL-A1 LTR ERVL -3389 2265 746 190 235 0 129 chr12 59284868 59284953 -84501502 - MER5A DNA MER1_type -100 89 16 25421 61 36 26 chr12 59284953 59285402 -84501053 - HERVL-A1 LTR ERVL -4908 746 303 1562 184 138 47 chr12 59285418 59285912 -84500543 + MER52C-int LTR ERV1 2464 3002 -2215 330 80 40 0 chr12 59285918 59285968 -84500487 + MER52C-int LTR ERV1 5977 6028 -1177 * 1218 138 32 0 chr12 59285966 59286154 -84500301 + MER52C-int LTR ERV1 6892 7085 -6 5702 132 157 23 chr12 59286160 59287269 -84499186 + MER52C LTR ERV1 1 1257 -21 1997 125 10 13 chr12 59287333 59287636 -84498819 - AluSx SINE Alu -10 302 1 1801 151 0 7 chr12 59287704 59287976 -84498479 - AluSx SINE Alu -42 270 1 3011 186 109 20 chr12 59287977 59288570 -84497885 - L1MDa LINE L1 -3862 2678 2139 1931 129 0 11 chr12 59288570 59288848 -84497607 - AluSx SINE Alu 0 312 38 3011 186 109 20 chr12 59288848 59289004 -84497451 - L1MDa LINE L1 -4401 2139 1998 276 30 0 0 chr12 59289004 59289037 -84497418 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 3011 186 109 20 chr12 59289037 59289279 -84497176 - L1MDa LINE L1 -4542 1998 1595 856 231 42 11 chr12 59289268 59289532 -84496923 - L1MEc LINE L1 -3135 3080 2809 * 2168 138 7 3 chr12 59289535 59289840 -84496615 - AluSx SINE Alu -6 306 1 460 265 7 0 chr12 59289840 59289976 -84496479 - L1MEc LINE L1 -3657 2558 2422 2451 95 0 0 chr12 59289976 59290280 -84496175 - AluSg SINE Alu -6 304 1 751 167 25 0 chr12 59290311 59290431 -84496024 - FLAM_C SINE Alu -19 124 2 2002 196 114 34 chr12 59290432 59290747 -84495708 - L1MEc LINE L1 -3924 2472 2184 2475 98 0 0 chr12 59290747 59291053 -84495402 - AluY SINE Alu -5 306 1 2002 196 114 34 chr12 59291053 59291099 -84495356 - L1MEc LINE L1 -4212 2184 2143 216 0 0 0 chr12 59291099 59291123 -84495332 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1601 188 7 28 chr12 59291127 59291277 -84495178 - AluJo SINE Alu -25 287 144 1757 186 28 0 chr12 59291277 59291567 -84494888 - AluJb SINE Alu -14 298 1 1601 188 7 28 chr12 59291567 59291704 -84494751 - AluJo SINE Alu -168 144 6 2002 196 114 34 chr12 59291704 59291939 -84494516 - L1MEc LINE L1 -4255 2141 1926 2272 93 10 17 chr12 59291939 59292229 -84494226 + AluSx SINE Alu 1 290 -22 315 0 0 0 chr12 59292229 59292264 -84494191 + (CA)n Simple_repeat Simple_repeat 2 36 0 2002 196 114 34 chr12 59292274 59292383 -84494072 - L1MEc LINE L1 -4470 1926 1703 2257 89 10 10 chr12 59292384 59292675 -84493780 + AluSx SINE Alu 1 291 -21 407 241 84 52 chr12 59292693 59292815 -84493640 - L1MEc LINE L1 -4562 1834 1702 2006 153 0 0 chr12 59292815 59293116 -84493339 + AluJb SINE Alu 1 301 -11 407 241 84 52 chr12 59293116 59293184 -84493271 - L1MEc LINE L1 -4694 1702 1638 684 154 28 28 chr12 59293192 59293335 -84493120 - L1MB5 LINE L1 -13 6161 6019 1672 199 51 0 chr12 59293605 59293901 -84492554 - AluJb SINE Alu -1 311 1 1705 120 62 78 chr12 59294013 59294185 -84492270 - AluSx SINE Alu -8 304 138 2387 104 19 0 chr12 59294185 59294492 -84491963 - AluSq SINE Alu 0 313 1 1705 120 62 78 chr12 59294492 59294628 -84491827 - AluSx SINE Alu -174 138 1 2243 102 3 16 chr12 59294638 59294941 -84491514 - AluSx SINE Alu -13 299 1 1213 202 0 0 chr12 59295065 59295263 -84491192 + AluJo SINE Alu 87 287 -25 848 128 104 0 chr12 59295263 59295427 -84491028 + L1MC2 LINE L1 6155 6335 -9 1213 202 0 0 chr12 59295427 59295451 -84491004 + AluJo SINE Alu 286 309 -3 2242 146 68 27 chr12 59295704 59296002 -84490453 + MSTB1 LTR MaLR 5 326 -106 2052 149 3 3 chr12 59296002 59296297 -84490158 - AluSq SINE Alu -18 295 1 2242 146 68 27 chr12 59296297 59296409 -84490046 + MSTB1 LTR MaLR 326 432 0 1960 147 7 3 chr12 59296711 59297004 -84489451 - AluSq SINE Alu -19 294 1 2426 81 3 0 chr12 59297380 59297676 -84488779 - AluSp SINE Alu -16 297 1 1855 157 45 68 chr12 59297706 59298022 -84488433 - MSTC LTR MaLR -12 416 94 2423 89 0 3 chr12 59298022 59298326 -84488129 - AluSc SINE Alu -6 303 1 1855 157 45 68 chr12 59298326 59298354 -84488101 - MSTC LTR MaLR -334 94 67 2184 103 3 20 chr12 59298354 59298656 -84487799 - AluSx SINE Alu 0 312 16 1855 157 45 68 chr12 59298656 59298736 -84487719 - MSTC LTR MaLR -361 67 1 2156 113 10 0 chr12 59299951 59300244 -84486211 + AluSg SINE Alu 1 296 -14 2229 138 0 0 chr12 59301319 59301631 -84484824 - AluSx SINE Alu 0 312 1 2527 58 3 29 chr12 59302365 59302677 -84483778 - AluY SINE Alu -7 304 1 2081 128 3 7 chr12 59303197 59303485 -84482970 + AluSx SINE Alu 1 287 -25 2112 86 0 4 chr12 59303544 59303813 -84482642 + AluY SINE Alu 1 268 -43 437 258 31 31 chr12 59304175 59304303 -84482152 - MIR SINE MIR -57 151 24 2281 96 31 0 chr12 59304537 59304828 -84481627 - AluSx SINE Alu -7 305 6 2556 63 0 3 chr12 59306650 59306953 -84479502 + AluY SINE Alu 1 302 -9 730 155 9 9 chr12 59306955 59307071 -84479384 - AluJo/FLAM SINE Alu -186 116 1 954 126 19 57 chr12 59307229 59307388 -84479067 + AluJb SINE Alu 148 300 -12 2058 99 15 0 chr12 59309191 59309463 -84476992 + AluSq SINE Alu 37 312 -1 447 254 91 67 chr12 59309495 59309776 -84476679 + L2 LINE L2 2982 3313 0 2322 98 0 7 chr12 59310355 59310661 -84475794 + AluY SINE Alu 1 304 -7 2206 122 0 0 chr12 59312919 59313214 -84473241 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr12 59315068 59315090 -84471365 + GC_rich Low_complexity Low_complexity 1 22 0 350 280 140 62 chr12 59315198 59315380 -84471075 + MIR SINE MIR 1 208 -54 2377 78 0 0 chr12 59315380 59315674 -84470781 + AluSc SINE Alu 1 294 -15 350 280 140 62 chr12 59315674 59315734 -84470721 + MIR SINE MIR 208 262 0 1599 173 27 17 chr12 59315909 59316204 -84470251 - AluJo SINE Alu -14 298 1 2081 127 0 17 chr12 59316327 59316481 -84469974 - AluSx SINE Alu -26 286 138 2368 93 3 0 chr12 59316481 59316771 -84469684 - AluSx SINE Alu -21 291 1 2081 127 0 17 chr12 59316771 59316907 -84469548 - AluSx SINE Alu -174 138 1 2337 107 0 0 chr12 59317053 59317361 -84469094 - AluSx SINE Alu -2 310 3 248 224 153 20 chr12 59317766 59317864 -84468591 + L2 LINE L2 2403 2513 -801 1368 132 19 9 chr12 59318087 59318299 -84468156 - AluSg/x SINE Alu -15 297 84 658 57 0 0 chr12 59318299 59318387 -84468068 - MER41A LTR ERV1 -301 253 166 2073 134 0 0 chr12 59318387 59318679 -84467776 - AluSx SINE Alu -7 305 14 735 49 246 16 chr12 59318728 59318764 -84467691 - MER41-int LTR ERV1 -1 5945 5919 2245 98 0 7 chr12 59318764 59319059 -84467396 - AluSg SINE Alu -17 293 1 2200 125 3 0 chr12 59319059 59319363 -84467092 - AluSx SINE Alu -7 305 1 735 49 246 16 chr12 59319363 59319447 -84467008 - MER41-int LTR ERV1 -26 5920 5796 1498 133 5 0 chr12 59319547 59319792 -84466663 + AluSg/x SINE Alu 75 320 0 535 172 38 57 chr12 59319792 59319815 -84466640 + MER4D LTR ERV1 189 211 -661 1957 125 36 0 chr12 59319815 59320095 -84466360 + AluSg SINE Alu 1 290 -20 535 172 38 57 chr12 59320095 59320228 -84466227 + MER4D LTR ERV1 211 342 -530 676 182 16 0 chr12 59320229 59320350 -84466105 + FLAM_C SINE Alu 5 127 -6 22 0 0 0 chr12 59320350 59320372 -84466083 + AT_rich Low_complexity Low_complexity 1 22 0 2304 70 13 48 chr12 59320372 59320687 -84465768 + AluY SINE Alu 1 304 -7 1121 88 40 0 chr12 59320687 59320835 -84465620 + AluSx SINE Alu 1 154 -158 674 220 69 159 chr12 59321041 59321452 -84465003 + L2 LINE L2 2327 2773 -541 2045 121 14 4 chr12 59321452 59321756 -84464699 + AluJb SINE Alu 1 307 0 674 220 69 159 chr12 59321756 59321801 -84464654 + L2 LINE L2 2773 2740 -574 1776 155 31 7 chr12 59321801 59322092 -84464363 + AluSx SINE Alu 1 298 -14 674 220 69 159 chr12 59322092 59322136 -84464319 + L2 LINE L2 2739 2785 -529 909 112 0 8 chr12 59322620 59322745 -84463710 - AluSq/x SINE Alu -187 125 2 646 98 14 126 chr12 59322753 59322773 -84463682 - FLAM_C SINE Alu -175 127 106 1863 122 0 45 chr12 59322773 59323061 -84463394 - AluSx SINE Alu -11 301 27 646 98 14 126 chr12 59323061 59323183 -84463272 - FLAM_C SINE Alu -196 106 1 1856 129 63 6 chr12 59323183 59323533 -84462922 - L1M3 LINE L1 -376 5807 5438 980 153 13 31 chr12 59323533 59323551 -84462904 - AluSp SINE Alu 0 313 296 2373 101 3 0 chr12 59323551 59323857 -84462598 - AluSp SINE Alu -6 307 1 980 153 13 31 chr12 59323857 59324067 -84462388 - AluSp SINE Alu -17 296 89 305 161 0 0 chr12 59324238 59324294 -84462161 - MER94 DNA DNA -78 56 1 2029 147 23 7 chr12 59324326 59324633 -84461822 - AluJo SINE Alu 0 312 1 613 86 9 29 chr12 59325493 59325598 -84460857 - L1MB3 LINE L1 -2 6181 6079 923 127 0 0 chr12 59325670 59325788 -84460667 + AluSq/x SINE Alu 1 118 -194 801 130 0 0 chr12 59325892 59326000 -84460455 - AluSq/x SINE Alu -204 108 1 277 222 317 13 chr12 59326015 59326245 -84460210 - L1ME4a LINE L1 -14 6107 5808 307 0 47 0 chr12 59326665 59326708 -84459747 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 204 0 0 chr12 59327273 59327317 -84459138 - L2 LINE L2 -6 3307 3264 611 140 0 0 chr12 59327847 59327940 -84458515 + AluJ/FLAM SINE Alu 2 94 -218 1940 142 3 40 chr12 59327941 59328244 -84458211 + AluSx SINE Alu 1 292 -20 2603 57 0 13 chr12 59328246 59328561 -84457894 + AluY SINE Alu 1 311 0 485 330 166 18 chr12 59328646 59329146 -84457309 - L2 LINE L2 -1264 2050 1477 366 372 69 28 chr12 59329422 59329785 -84456670 - L2 LINE L2 -2303 1011 634 240 296 34 11 chr12 59329804 59329892 -84456563 + MLT1K LTR MaLR 2 91 -497 302 73 109 18 chr12 59329972 59330027 -84456428 - AluJ/FLAM SINE Alu -241 61 2 1184 117 0 0 chr12 59330079 59330241 -84456214 - AluSg/x SINE Alu -4 308 147 244 171 0 0 chr12 59330341 59330382 -84456073 - Alu SINE Alu -60 243 203 2232 124 0 0 chr12 59330501 59330799 -84455656 - AluSg SINE Alu 0 310 13 2361 80 6 26 chr12 59330803 59330976 -84455479 - AluSp SINE Alu -7 306 140 2487 85 0 0 chr12 59330976 59331283 -84455172 - AluY SINE Alu -1 310 4 2361 80 6 26 chr12 59331283 59331421 -84455034 - AluSp SINE Alu -173 140 1 1499 150 129 18 chr12 59331421 59331747 -84454708 - MLT1B LTR MaLR -10 380 19 1263 172 12 112 chr12 59331847 59332017 -84454438 - AluSx SINE Alu 0 302 179 2404 80 13 0 chr12 59332017 59332319 -84454136 - AluSx SINE Alu -6 306 1 1263 172 12 112 chr12 59332319 59332479 -84453976 - AluSx SINE Alu -123 179 5 1995 128 37 24 chr12 59332921 59333219 -84453236 - AluSq SINE Alu -11 302 1 3924 141 11 6 chr12 59333239 59333871 -84452584 - MER41B LTR ERV1 0 635 1 2213 130 0 0 chr12 59333922 59334230 -84452225 - AluSx SINE Alu -4 308 1 1386 149 28 99 chr12 59334230 59334552 -84451903 - AluJb SINE Alu -11 301 3 2613 55 0 0 chr12 59334569 59334876 -84451579 - AluY SINE Alu -4 307 1 2089 125 7 3 chr12 59334876 59335180 -84451275 - AluSq SINE Alu -8 305 1 6558 174 27 86 chr12 59335500 59336887 -84449568 + SVA Other Other 80 1384 -2 838 245 116 34 chr12 59337025 59337491 -84448964 + HAL1 LINE L1 2004 2507 0 1405 102 6 0 chr12 59338262 59338439 -84448016 - AluSp SINE Alu -135 178 1 929 172 91 25 chr12 59338441 59338726 -84447729 - L1M4 LINE L1 -751 5395 5092 1168 169 53 0 chr12 59338741 59338930 -84447525 - AluSg/x SINE Alu -45 265 67 1951 153 13 0 chr12 59339037 59339337 -84447118 + AluSx SINE Alu 1 304 -8 1378 195 22 87 chr12 59339761 59340084 -84446371 - AluJb SINE Alu 0 302 1 2013 109 0 68 chr12 59340088 59340256 -84446199 - AluY SINE Alu -12 299 162 2494 67 7 0 chr12 59340256 59340556 -84445899 - AluSg SINE Alu -2 308 7 2013 109 0 68 chr12 59340556 59340708 -84445747 - AluY SINE Alu -149 162 1 2569 72 7 0 chr12 59341418 59341724 -84444731 + AluSx SINE Alu 1 308 -4 2189 86 0 0 chr12 59341743 59342011 -84444444 + AluSg SINE Alu 23 290 -20 2331 96 3 6 chr12 59342071 59342383 -84444072 + AluY SINE Alu 1 311 0 1930 154 7 17 chr12 59342398 59342531 -84443924 + AluSx SINE Alu 2 135 -177 1987 152 0 10 chr12 59342531 59342833 -84443622 + AluSg SINE Alu 1 299 -11 1930 154 7 17 chr12 59342833 59342998 -84443457 + AluSx SINE Alu 135 297 -15 1589 198 34 19 chr12 59343035 59343242 -84443213 + MER1B DNA MER1_type 11 226 -2486 2055 105 13 45 chr12 59343242 59343408 -84443047 - AluSx SINE Alu -9 303 150 2207 94 7 3 chr12 59343408 59343706 -84442749 - AluY SINE Alu -12 299 1 2055 105 13 45 chr12 59343706 59343852 -84442603 - AluSx SINE Alu -162 150 1 1589 198 34 19 chr12 59343852 59343968 -84442487 + MER1B DNA MER1_type 226 339 0 873 155 14 0 chr12 59344040 59344182 -84442273 + AluJo SINE Alu 5 148 -164 241 167 0 0 chr12 59344191 59344227 -84442228 - Alu SINE Alu -97 36 1 272 160 20 0 chr12 59344283 59344333 -84442122 + L2 LINE L2 3263 3313 0 21 36 0 0 chr12 59344576 59344604 -84441851 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr12 59344899 59344928 -84441527 + (CATA)n Simple_repeat Simple_repeat 2 30 0 185 133 0 67 chr12 59344928 59344942 -84441513 + L2 LINE L2 3272 3285 -28 1753 159 21 17 chr12 59344942 59345231 -84441224 - AluJb SINE Alu -22 290 1 185 133 0 67 chr12 59345231 59345261 -84441194 + L2 LINE L2 3285 3313 0 374 250 0 0 chr12 59345435 59345523 -84440932 + AluSg/x SINE Alu 215 302 0 2004 140 0 3 chr12 59345872 59346200 -84440255 - AluJb SINE Alu 0 354 28 405 0 0 0 chr12 59346530 59346575 -84439880 + (CA)n Simple_repeat Simple_repeat 2 46 0 2120 108 45 0 chr12 59346897 59347184 -84439271 - AluSx SINE Alu -12 300 1 1757 150 36 4 chr12 59347198 59347354 -84439101 - AluJb SINE Alu -29 283 113 260 27 27 0 chr12 59347354 59347391 -84439064 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1757 150 36 4 chr12 59347391 59347508 -84438947 - AluJb SINE Alu -199 113 1 333 0 0 0 chr12 59347702 59347739 -84438716 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr12 59347739 59347760 -84438695 + AT_rich Low_complexity Low_complexity 1 21 0 4129 152 28 13 chr12 59347760 59348444 -84438011 - L1MB7 LINE L1 0 6184 5487 2424 110 0 0 chr12 59348444 59348754 -84437701 - AluSx SINE Alu -2 310 1 4129 152 28 13 chr12 59348754 59348814 -84437641 - L1MB7 LINE L1 -697 5487 5429 227 33 0 0 chr12 59348914 59348944 -84437511 - AluY SINE Alu -272 30 1 348 130 14 14 chr12 59349042 59349111 -84437344 + AluSp/q SINE Alu 231 299 -4 1590 195 29 23 chr12 59349129 59349436 -84437019 + AluJb SINE Alu 1 309 -3 1821 155 16 13 chr12 59349519 59349823 -84436632 + AluSq SINE Alu 1 305 -8 1832 167 19 16 chr12 59349826 59350137 -84436318 + AluSx SINE Alu 1 312 0 2112 123 0 30 chr12 59350226 59350527 -84435928 + AluSx SINE Alu 1 292 -20 1809 162 20 10 chr12 59350769 59351071 -84435384 - AluSx SINE Alu -7 305 1 1490 212 7 7 chr12 59351078 59351366 -84435089 - AluJo SINE Alu -24 288 1 2177 122 3 0 chr12 59351724 59352028 -84434427 + AluSx SINE Alu 1 305 -7 1434 270 57 47 chr12 59352270 59352847 -84433608 + MER119 DNA MER1_type 1 583 0 1981 132 3 45 chr12 59352936 59353247 -84433208 - AluSx SINE Alu -14 298 1 1936 119 56 7 chr12 59353254 59353540 -84432915 - AluSx SINE Alu -6 306 7 1602 145 26 43 chr12 59353953 59354256 -84432199 - AluSp SINE Alu -15 298 1 2063 123 3 10 chr12 59354261 59354563 -84431892 - AluSq SINE Alu -13 300 1 2111 114 10 3 chr12 59354764 59355061 -84431394 + AluSg SINE Alu 1 299 -11 200 159 0 45 chr12 59355062 59355106 -84431349 + GA-rich Low_complexity Low_complexity 2 43 0 320 244 199 15 chr12 59355111 59355377 -84431078 - L1ME4a LINE L1 -92 6029 5715 396 59 0 0 chr12 59355403 59355454 -84431001 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1757 190 0 0 chr12 59355457 59355746 -84430709 - AluJb SINE Alu -23 289 1 277 244 83 67 chr12 59355766 59355959 -84430496 - L1ME4a LINE L1 -409 5712 5517 4206 121 44 108 chr12 59356276 59357109 -84429346 + LTR1 LTR ERV1 3 782 -3 7469 185 42 88 chr12 59357227 59359029 -84427426 + MER52A LTR ERV1 36 1755 0 3691 116 19 18 chr12 59359029 59359598 -84426857 + MER52A-int LTR ERV1 2 571 -6520 9124 129 34 28 chr12 59359714 59360198 -84426257 + MER52A-int LTR ERV1 1698 2178 -4913 2090 125 24 0 chr12 59360198 59360485 -84425970 - AluSx SINE Alu -18 294 1 9124 129 34 28 chr12 59360485 59360586 -84425869 + MER52A-int LTR ERV1 2178 2277 -4814 2602 84 0 0 chr12 59360586 59360897 -84425558 - AluY SINE Alu 0 311 1 9124 129 34 28 chr12 59360897 59361805 -84424650 + MER52A-int LTR ERV1 2277 3201 -3890 1821 98 0 22 chr12 59361822 59362096 -84424359 + MER52A-int LTR ERV1 746 1013 -6078 775 162 0 14 chr12 59362116 59362264 -84424191 + MER52A-int LTR ERV1 4545 4690 -1256 430 38 0 0 chr12 59362269 59362322 -84424133 + MER52A-int LTR ERV1 5976 6028 -1177 * 1334 106 10 5 chr12 59362320 59362519 -84423936 + MER52A-int LTR ERV1 6892 7091 0 7613 188 34 75 chr12 59362519 59364347 -84422108 + MER52A LTR ERV1 1 1753 -2 4798 119 1 11 chr12 59364348 59365078 -84421377 + L1PA13 LINE L1 5434 6156 -7 1890 181 0 23 chr12 59365081 59365391 -84421064 + AluJb SINE Alu 1 303 -9 34 42 0 0 chr12 59365392 59365440 -84421015 + AT_rich Low_complexity Low_complexity 1 48 0 243 236 0 18 chr12 59365508 59365563 -84420892 - L2 LINE L2 -5 3308 3255 2143 163 62 50 chr12 59365773 59365945 -84420510 + LTR45B LTR ERV1 19 187 -302 765 203 0 0 chr12 59365945 59366078 -84420377 + FLAM_C SINE Alu 1 133 0 2143 163 62 50 chr12 59366078 59366370 -84420085 + LTR45B LTR ERV1 187 489 0 25 0 0 0 chr12 59366521 59366546 -84419909 + AT_rich Low_complexity Low_complexity 1 25 0 692 61 50 0 chr12 59366609 59366708 -84419747 + L1PA13 LINE L1 6060 6163 0 621 89 0 0 chr12 59366721 59366800 -84419655 + AluS SINE Alu 7 85 -228 3698 125 26 44 chr12 59366904 59367518 -84418937 + LTR26 LTR ERV1 1 603 0 1765 146 45 0 chr12 59367963 59368231 -84418224 - AluJb SINE Alu -32 280 1 239 312 138 7 chr12 59368241 59368379 -84418076 + L2 LINE L2 3158 3313 0 197 407 17 23 chr12 59368420 59368592 -84417863 - L2 LINE L2 -2606 708 538 2270 97 3 16 chr12 59368708 59369017 -84417438 - AluSg SINE Alu -5 305 1 589 141 0 0 chr12 59369043 59369128 -84417327 + FLAM SINE Alu 47 131 -12 2221 137 59 111 chr12 59369150 59369489 -84416966 + MER75 DNA T2_type 1 356 -158 2100 138 0 0 chr12 59369489 59369793 -84416662 + AluSx SINE Alu 1 304 -8 408 125 0 0 chr12 59369793 59369857 -84416598 + (GA)n Simple_repeat Simple_repeat 1 64 0 2221 137 59 111 chr12 59369857 59369993 -84416462 + MER75 DNA T2_type 354 512 -2 207 0 0 0 chr12 59369997 59370020 -84416435 + (A)n Simple_repeat Simple_repeat 1 23 0 2294 86 0 13 chr12 59370022 59370336 -84416119 + AluY SINE Alu 1 310 -1 5722 128 11 40 chr12 59370424 59371020 -84415435 + Tigger1 DNA MER2_type 1 612 -1806 1840 135 3 0 chr12 59371020 59371308 -84415147 - AluJo SINE Alu -23 289 1 1400 186 0 72 chr12 59371313 59371620 -84414835 - AluJb SINE Alu -27 285 1 5722 128 11 40 chr12 59371620 59371928 -84414527 + Tigger1 DNA MER2_type 616 885 -1533 1912 152 0 0 chr12 59371936 59372233 -84414222 + AluSx SINE Alu 12 308 -4 2739 154 70 8 chr12 59372430 59372956 -84413499 + MER89 LTR ERV1 1 559 0 617 131 0 175 chr12 59373006 59373166 -84413289 - AluJb SINE Alu -19 293 162 2396 35 0 54 chr12 59373309 59373624 -84412831 + AluY SINE Alu 1 298 -13 234 0 0 0 chr12 59374309 59374335 -84412120 + (A)n Simple_repeat Simple_repeat 1 26 0 1826 111 0 21 chr12 59374716 59374995 -84411460 + AluSx SINE Alu 1 273 -39 1324 89 0 0 chr12 59375543 59375722 -84410733 + AluSg/x SINE Alu 130 308 -2 314 191 56 0 chr12 59375778 59375867 -84410588 - L1MB3 LINE L1 -3 6180 6087 1065 223 130 7 chr12 59375879 59376171 -84410284 + L2 LINE L2 2450 2777 -537 396 262 74 8 chr12 59376188 59376310 -84410145 + L2 LINE L2 2918 3047 -266 319 234 13 13 chr12 59376341 59376418 -84410037 + L2 LINE L2 3236 3312 -1 480 232 24 40 chr12 59376539 59376664 -84409791 - MIR SINE MIR -56 152 30 296 287 33 25 chr12 59376919 59376994 -84409461 - HAL1 LINE L1 -4 2503 2425 1872 135 7 3 chr12 59376994 59377282 -84409173 + AluSx SINE Alu 1 289 -23 296 287 33 25 chr12 59377282 59377328 -84409127 - HAL1 LINE L1 -82 2425 2381 1881 144 7 3 chr12 59377328 59377626 -84408829 - AluSx SINE Alu -11 301 3 2342 67 0 3 chr12 59377659 59377956 -84408499 - AluSg SINE Alu -14 296 1 1155 243 58 120 chr12 59377956 59378524 -84407931 - HAL1 LINE L1 -1828 679 147 1995 134 3 0 chr12 59378546 59378838 -84407617 - AluSx SINE Alu -19 293 1 450 0 0 0 chr12 59379625 59379675 -84406780 + (TG)n Simple_repeat Simple_repeat 1 50 0 2081 95 0 0 chr12 59379677 59379951 -84406504 - AluSg SINE Alu -36 274 1 1987 134 0 0 chr12 59380347 59380639 -84405816 - AluSx SINE Alu -14 298 7 28 48 0 0 chr12 59380778 59380820 -84405635 + AT_rich Low_complexity Low_complexity 1 42 0 1630 182 4 0 chr12 59380832 59381172 -84405283 - AluJo SINE Alu 0 341 1 2128 92 0 48 chr12 59381178 59381492 -84404963 - AluSx SINE Alu -13 299 1 1976 139 53 24 chr12 59381511 59381792 -84404663 - MER7A DNA MER2_type -2693 345 53 2009 95 46 7 chr12 59381792 59382075 -84404380 - AluSx SINE Alu -14 298 5 1976 139 53 24 chr12 59382075 59382130 -84404325 - MER7A DNA MER2_type -2985 53 1 486 282 40 69 chr12 59382342 59382603 -84403852 - MIR SINE MIR 0 262 8 322 285 60 53 chr12 59382645 59382796 -84403659 + MIR SINE MIR 57 208 -54 196 254 146 73 chr12 59382972 59383082 -84403373 - MIR SINE MIR -10 252 135 1808 132 44 14 chr12 59383704 59384000 -84402455 - AluSg SINE Alu -5 305 1 1947 142 0 0 chr12 59384036 59384331 -84402124 - AluSx SINE Alu -17 295 1 332 263 81 10 chr12 59385072 59385171 -84401284 - MIR3 SINE MIR -18 190 85 1356 153 97 4 chr12 59385281 59385529 -84400926 - AluJb SINE Alu -41 271 1 2249 104 0 0 chr12 59385862 59386170 -84400285 - AluSg1 SINE Alu -1 308 1 1236 220 38 41 chr12 59386197 59386488 -84399967 + AluJo SINE Alu 2 291 -11 449 253 40 0 chr12 59386932 59387082 -84399373 + MER103 DNA DNA 3 158 -8 2184 101 0 0 chr12 59387182 59387478 -84398977 + AluSc SINE Alu 6 301 -8 2088 112 7 0 chr12 59388002 59388306 -84398149 + AluSx SINE Alu 1 306 -6 2179 94 3 0 chr12 59388378 59388675 -84397780 + AluSp SINE Alu 1 298 -15 1750 121 15 44 chr12 59388692 59388964 -84397491 - MER1B DNA MER1_type 0 339 76 724 92 101 0 chr12 59388964 59389073 -84397382 + AluJo SINE Alu 16 135 -177 706 218 99 0 chr12 59389075 59389217 -84397238 + AluJo SINE Alu 137 292 -10 2149 112 0 0 chr12 59389223 59389518 -84396937 + AluSx SINE Alu 1 295 -17 1375 117 0 0 chr12 59389713 59389909 -84396546 + AluSg/x SINE Alu 104 299 -11 1029 189 25 0 chr12 59389955 59390151 -84396304 + AluJb SINE Alu 87 287 -25 1979 96 7 4 chr12 59390161 59390433 -84396022 + AluSc SINE Alu 1 273 -36 2199 103 0 3 chr12 59390448 59390748 -84395707 + AluSg SINE Alu 1 299 -11 248 53 26 0 chr12 59390748 59390786 -84395669 + (TA)n Simple_repeat Simple_repeat 2 40 0 1401 206 0 31 chr12 59390850 59391142 -84395313 + AluJo SINE Alu 1 283 -29 286 211 40 0 chr12 59391149 59391225 -84395230 + Charlie5 DNA MER1_type 2506 2584 -28 2205 97 0 3 chr12 59391668 59391966 -84394489 + AluSx SINE Alu 1 297 -15 2201 100 0 3 chr12 59392100 59392399 -84394056 + AluSq SINE Alu 1 298 -15 2284 91 0 0 chr12 59392404 59392700 -84393755 + AluSx SINE Alu 1 296 -16 237 384 96 12 chr12 59392818 59393068 -84393387 - L2 LINE L2 -358 2956 2686 2009 98 44 7 chr12 59394000 59394297 -84392158 + AluSx SINE Alu 1 308 -4 573 139 0 0 chr12 59394571 59394650 -84391805 + AluS SINE Alu 2 80 -232 * 705 77 0 0 chr12 59394647 59394738 -84391717 - AluY SINE Alu -5 306 216 5966 63 24 12 chr12 59394849 59395876 -84390579 - SVA Other Other -520 866 1 447 276 167 46 chr12 59395884 59396083 -84390372 - HAL1 LINE L1 -615 1892 1718 2334 60 0 3 chr12 59396083 59396381 -84390074 + AluY SINE Alu 1 297 -14 447 276 167 46 chr12 59396381 59396409 -84390046 - HAL1 LINE L1 -789 1718 1695 2113 109 7 0 chr12 59396409 59396712 -84389743 + AluSx SINE Alu 1 305 -7 447 276 167 46 chr12 59396712 59396806 -84389649 - HAL1 LINE L1 -812 1695 1531 321 254 0 0 chr12 59396810 59396877 -84389578 + MER94 DNA DNA 67 133 -1 2553 225 64 13 chr12 59396880 59397542 -84388913 - L1MC4 LINE L1 -279 7763 7057 1771 112 0 12 chr12 59397542 59397800 -84388655 + AluSx SINE Alu 1 255 -57 2553 225 64 13 chr12 59397800 59397884 -84388571 - L1MC4 LINE L1 -985 7057 6979 4321 128 15 126 chr12 59397983 59399547 -84386908 - pTR5 LTR ERV1 0 2606 1524 2001 118 28 0 chr12 59399560 59399849 -84386606 + AluSx SINE Alu 1 297 -15 870 284 82 39 chr12 59399849 59400204 -84386251 + L1ME LINE L1 4461 4799 -1347 2026 136 3 0 chr12 59400204 59400505 -84385950 + AluSx SINE Alu 1 302 -10 870 284 82 39 chr12 59400505 59400886 -84385569 + L1ME LINE L1 4799 5232 -914 2146 102 0 13 chr12 59400929 59401242 -84385213 + AluY SINE Alu 1 309 -2 1910 136 7 3 chr12 59401253 59401547 -84384908 + AluSq SINE Alu 1 295 -18 6770 71 16 4 chr12 59401547 59403031 -84383424 + L1PA8 LINE L1 4708 6172 0 933 274 93 12 chr12 59403104 59403535 -84382920 + L1ME LINE L1 5329 5794 -370 1975 130 7 0 chr12 59403737 59404029 -84382426 + AluSx SINE Alu 1 294 -18 613 174 26 0 chr12 59404233 59404348 -84382107 + FRAM SINE Alu 52 169 -7 1885 133 26 0 chr12 59404398 59404700 -84381755 - AluSg SINE Alu 0 310 1 878 117 0 8 chr12 59404705 59404833 -84381622 - AluSq/x SINE Alu -180 132 6 2231 72 0 10 chr12 59404845 59405149 -84381306 - AluSc SINE Alu -8 301 1 1489 132 70 28 chr12 59405156 59405443 -84381012 - AluSx SINE Alu -13 299 1 225 0 0 0 chr12 59407707 59407732 -84378723 + (T)n Simple_repeat Simple_repeat 1 25 0 2131 83 3 13 chr12 59408061 59408363 -84378092 + AluSp SINE Alu 1 299 -14 2220 96 3 0 chr12 59408664 59408967 -84377488 + AluSg SINE Alu 1 304 -6 2432 58 7 0 chr12 59409039 59409347 -84377108 + AluY SINE Alu 2 311 0 890 92 127 7 chr12 59409625 59409767 -84376688 - AluJb SINE Alu -21 291 133 2481 42 7 3 chr12 59410750 59411060 -84375395 - AluY SINE Alu 0 311 1 1838 127 0 17 chr12 59411065 59411236 -84375219 - AluSg1 SINE Alu -7 302 137 2153 87 40 0 chr12 59411236 59411535 -84374920 - AluSp SINE Alu -2 311 1 1838 127 0 17 chr12 59411535 59411662 -84374793 - AluSg1 SINE Alu -172 137 9 1605 139 95 4 chr12 59411728 59412001 -84374454 - AluSx SINE Alu -14 298 1 675 145 81 32 chr12 59412005 59412129 -84374326 - FLAM_C SINE Alu 0 133 4 1239 169 34 23 chr12 59412169 59412435 -84374020 - AluJo SINE Alu -17 295 27 1433 102 0 0 chr12 59412591 59412787 -84373668 + AluSq SINE Alu 1 196 -117 1807 106 0 0 chr12 59412889 59413134 -84373321 + AluSx SINE Alu 55 299 -13 366 228 0 0 chr12 59413140 59413219 -84373236 + Charlie5 DNA MER1_type 2238 2316 -296 955 101 48 12 chr12 59413219 59413387 -84373068 - L1MB8 LINE L1 0 6178 6005 2181 94 80 14 chr12 59413979 59414331 -84372124 + THE1C LTR MaLR 1 375 0 5645 66 20 51 chr12 59414654 59415678 -84370777 + SVA Other Other 2 866 -520 6118 68 27 52 chr12 59415746 59416724 -84369731 + SVA Other Other 433 1385 -1 935 184 0 18 chr12 59416724 59416892 -84369563 + AluJb SINE Alu 134 298 -14 277 304 128 26 chr12 59416905 59417132 -84369323 + MIR SINE MIR 3 252 -10 2225 83 0 3 chr12 59417574 59417863 -84368592 - AluSc SINE Alu -21 288 1 22 0 0 0 chr12 59417866 59417888 -84368567 + AT_rich Low_complexity Low_complexity 1 22 0 726 217 82 65 chr12 59417937 59418264 -84368191 + L1MEc LINE L1 982 1302 -1274 4432 90 0 20 chr12 59418264 59418520 -84367935 - LTR10C LTR ERV1 0 591 331 2094 45 73 10 chr12 59418520 59418808 -84367647 - AluY SINE Alu -5 306 1 4432 90 0 20 chr12 59418808 59419154 -84367301 - LTR10C LTR ERV1 -260 331 1 726 217 82 65 chr12 59419154 59419453 -84367002 + L1MEc LINE L1 1302 1709 -867 28 0 0 0 chr12 59419448 59419476 -84366979 + AT_rich Low_complexity Low_complexity 1 28 0 * 546 254 118 48 chr12 59419645 59419949 -84366506 + L1MEc LINE L1 1919 2259 -4137 1568 188 20 24 chr12 59419949 59420247 -84366208 + AluJo SINE Alu 1 297 -15 546 254 118 48 chr12 59420247 59420402 -84366053 + L1MEc LINE L1 2259 2402 -3994 2319 82 0 3 chr12 59420411 59420717 -84365738 + AluY SINE Alu 1 305 -6 2233 88 37 0 chr12 59420809 59421104 -84365351 + AluSx SINE Alu 1 306 -6 417 253 68 34 chr12 59421276 59421422 -84365033 - L2 LINE L2 -4 3309 3159 721 120 0 37 chr12 59421510 59421618 -84364837 - FLAM_C SINE Alu -11 132 29 2292 92 7 0 chr12 59421723 59422027 -84364428 + AluSp SINE Alu 1 306 -7 949 161 0 0 chr12 59422031 59422180 -84364275 + AluJb SINE Alu 35 183 -129 632 205 18 9 chr12 59422180 59422292 -84364163 - FAM SINE Alu -72 113 1 3107 107 77 85 chr12 59422457 59422577 -84363878 + L1MC2 LINE L1 5709 5828 -516 957 216 0 6 chr12 59422577 59422744 -84363711 + FRAM SINE Alu 1 166 0 3107 107 77 85 chr12 59422744 59422790 -84363665 + L1MC2 LINE L1 5828 5873 -471 1781 154 13 17 chr12 59422790 59423089 -84363366 + AluJb SINE Alu 4 301 -11 3107 107 77 85 chr12 59423089 59423168 -84363287 + L1MC2 LINE L1 5873 5951 -393 2110 131 0 0 chr12 59423168 59423458 -84362997 + AluSq SINE Alu 1 290 -23 3107 107 77 85 chr12 59423458 59423848 -84362607 + L1MC2 LINE L1 5951 6341 -3 966 169 0 45 chr12 59423954 59424131 -84362324 + AluJo SINE Alu 87 255 -57 1545 181 31 46 chr12 59424325 59424429 -84362026 - MER2 DNA MER2_type -25 320 216 3809 128 10 0 chr12 59424429 59424951 -84361504 + MER1A DNA MER1_type 1 527 0 1545 181 31 46 chr12 59424951 59425171 -84361284 - MER2 DNA MER2_type -129 216 1 420 342 82 58 chr12 59425596 59426239 -84360216 - L2 LINE L2 -6 3266 2602 2313 100 3 10 chr12 59426669 59426980 -84359475 - AluSq SINE Alu -4 309 1 537 331 68 20 chr12 59427018 59427269 -84359186 - L2 LINE L2 -5 3267 3005 1880 129 129 26 chr12 59427269 59427609 -84358846 - THE1C LTR MaLR 0 375 1 485 240 8 48 chr12 59427624 59427635 -84358820 - MIR SINE MIR 0 262 252 2262 107 3 13 chr12 59427635 59427944 -84358511 + AluSx SINE Alu 1 306 -6 485 240 8 48 chr12 59427944 59428057 -84358398 - MIR SINE MIR -10 252 143 882 307 69 33 chr12 59428069 59428492 -84357963 - LTR16B LTR ERVL -26 438 1 271 246 0 0 chr12 59428737 59428794 -84357661 + L2 LINE L2 3211 3267 -5 230 346 48 5 chr12 59428941 59429129 -84357326 - L2 LINE L2 -1399 1915 1720 239 273 11 23 chr12 59429195 59429283 -84357172 + CT-rich Low_complexity Low_complexity 1 87 0 386 216 11 0 chr12 59429698 59429786 -84356669 - HAL1 LINE L1 -182 2325 2237 2222 117 3 0 chr12 59429991 59430289 -84356166 + AluSx SINE Alu 1 299 -13 253 202 10 101 chr12 59431403 59431502 -84354953 - L1MC4 LINE L1 -1339 6703 6614 245 208 182 0 chr12 59431505 59431582 -84354873 - L1MC4 LINE L1 -1340 6702 6612 308 205 90 0 chr12 59431621 59431699 -84354756 + L1MC4 LINE L1 6613 6697 -1345 383 89 59 10 chr12 59431710 59431811 -84354644 + (TA)n Simple_repeat Simple_repeat 1 106 0 2395 64 3 16 chr12 59431847 59432161 -84354294 - AluY SINE Alu 0 311 2 544 242 19 51 chr12 59432171 59432328 -84354127 - MIR SINE MIR -109 153 2 438 143 0 0 chr12 59432337 59432400 -84354055 + AluSq/x SINE Alu 78 140 -172 283 268 47 63 chr12 59432897 59433024 -84353431 - L2 LINE L2 -234 3038 2914 1783 111 108 27 chr12 59433077 59433411 -84353044 - LTR7 LTR ERV1 0 450 90 1201 137 75 44 chr12 59433519 59433745 -84352710 + THE1C LTR MaLR 143 375 0 7653 52 13 0 chr12 59434149 59435750 -84350705 - L1PA6 LINE L1 -11 6143 4532 180 0 0 0 chr12 59435905 59435925 -84350530 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 667 153 147 0 chr12 59435931 59436081 -84350374 + L1MCa LINE L1 1875 2046 -4380 373 209 0 0 chr12 59436082 59436149 -84350306 - MER2 DNA MER2_type -11 334 268 1658 192 11 3 chr12 59436153 59436439 -84350016 + AluJo SINE Alu 1 288 -24 782 194 26 7 chr12 59436508 59436663 -84349792 - MER2 DNA MER2_type -187 158 1 2444 141 9 69 chr12 59436677 59436925 -84349530 + L1MCa LINE L1 2016 2277 -4272 2374 81 0 3 chr12 59436925 59437222 -84349233 + AluY SINE Alu 1 296 -15 2444 141 9 69 chr12 59437222 59437546 -84348909 + L1MCa LINE L1 2277 2599 -3950 2218 120 0 3 chr12 59437549 59437850 -84348605 + AluSx SINE Alu 1 300 -12 1148 151 0 6 chr12 59437850 59438029 -84348426 + AluSg/x SINE Alu 132 309 -1 6497 96 21 2 chr12 59438053 59439025 -84347430 + L1PA13 LINE L1 5175 6163 0 1071 197 18 29 chr12 59439026 59439300 -84347155 - L1M4 LINE L1 -3105 3041 2771 1756 160 170 0 chr12 59440750 59441126 -84345329 - LTR65 LTR ERV1 -8 661 222 769 203 0 0 chr12 59441126 59441249 -84345206 - FLAM_C SINE Alu -19 124 2 787 181 14 0 chr12 59441250 59441394 -84345061 - LTR65 LTR ERV1 -434 235 90 4015 154 44 10 chr12 59442653 59443341 -84343114 + MER50 LTR ERV1 1 711 -23 7037 125 24 19 chr12 59443382 59445136 -84341319 + MER50-int LTR ERV1 1 1843 -5362 18967 150 23 32 chr12 59445139 59445833 -84340622 + MER50-int LTR ERV1 2790 3489 -3716 1569 102 70 0 chr12 59445833 59446048 -84340407 - MER30 DNA MER1_type 0 230 1 18967 150 23 32 chr12 59446048 59447572 -84338883 + MER50-int LTR ERV1 3489 5026 -2179 360 0 0 0 chr12 59447572 59447612 -84338843 + (TG)n Simple_repeat Simple_repeat 1 40 0 1974 140 4 0 chr12 59447612 59447890 -84338565 - AluSx SINE Alu -33 279 1 18967 150 23 32 chr12 59447890 59448938 -84337517 + MER50-int LTR ERV1 5024 6028 -1177 2478 75 0 3 chr12 59448935 59449253 -84337202 + MER50-int LTR ERV1 6881 7197 -8 * 4095 130 65 16 chr12 59449253 59449928 -84336527 + MER50 LTR ERV1 4 711 -23 316 159 0 0 chr12 59450334 59450378 -84336077 + Alu SINE Alu 1 44 -259 796 132 35 11 chr12 59450405 59450579 -84335876 + GA-rich Low_complexity Low_complexity 3 180 0 853 157 75 7 chr12 59450602 59450749 -84335706 - AluJo SINE Alu -154 158 2 5535 160 13 13 chr12 59450750 59451589 -84334866 - L1P LINE L1 -814 5332 4491 2145 131 0 3 chr12 59451589 59451887 -84334568 - AluSq SINE Alu -16 297 1 5535 160 13 13 chr12 59451887 59452076 -84334379 - L1P LINE L1 -1654 4492 4304 1164 227 112 164 chr12 59452391 59452754 -84333701 + L2 LINE L2 836 1216 -2098 810 129 26 0 chr12 59452754 59452870 -84333585 + AluJo SINE Alu 2 120 -192 1164 227 112 164 chr12 59452870 59453406 -84333049 + L2 LINE L2 1216 1798 -1516 3268 187 13 94 chr12 59453406 59453561 -84332894 + L1M4 LINE L1 4089 4255 -1891 249 33 0 0 chr12 59453561 59453591 -84332864 + (CA)n Simple_repeat Simple_repeat 2 31 0 3268 187 13 94 chr12 59453591 59453817 -84332638 + L1M4 LINE L1 4255 4498 -1648 1265 124 5 5 chr12 59453817 59454003 -84332452 + AluJo SINE Alu 120 305 -7 3268 187 13 94 chr12 59454003 59454025 -84332430 + L1M4 LINE L1 4498 4520 -1626 2143 121 3 3 chr12 59454025 59454322 -84332133 + AluSx SINE Alu 1 297 -15 3268 187 13 94 chr12 59454322 59454888 -84331567 + L1M4 LINE L1 4520 5039 -1107 2059 138 0 0 chr12 59454888 59455184 -84331271 + AluJo SINE Alu 1 296 -16 3268 187 13 94 chr12 59455184 59455305 -84331150 + L1M4 LINE L1 5039 5168 -978 184 109 22 22 chr12 59455570 59455592 -84330863 + (TAA)n Simple_repeat Simple_repeat 2 23 -24 1513 175 52 18 chr12 59455592 59455878 -84330577 + AluJo SINE Alu 1 296 -16 184 109 22 22 chr12 59455878 59455901 -84330554 + (TAA)n Simple_repeat Simple_repeat 22 47 0 2637 205 36 4 chr12 59455954 59456432 -84330023 - LTR42 LTR ERVL 0 495 3 2428 87 7 0 chr12 59457137 59457487 -84328968 + AluSx SINE Alu 1 347 -1084 3513 193 23 81 chr12 59457487 59458515 -84327940 - LTR5 LTR ERVK 0 969 1 2428 87 7 0 chr12 59458515 59458566 -84327889 + AluSx SINE Alu 347 1431 0 1852 142 0 46 chr12 59458568 59458891 -84327564 + AluJo SINE Alu 1 308 -4 1428 157 112 24 chr12 59459349 59459636 -84326819 + AluJo SINE Alu 1 312 0 206 167 0 21 chr12 59460290 59460338 -84326117 + (TA)n Simple_repeat Simple_repeat 2 48 0 490 238 50 39 chr12 59460357 59460538 -84325917 - L1ME3A LINE L1 -215 5955 5773 1980 81 0 0 chr12 59460562 59460810 -84325645 + AluSq SINE Alu 1 248 -65 1986 97 11 0 chr12 59460910 59461178 -84325277 - AluSq SINE Alu -42 271 1 234 0 0 0 chr12 59461178 59461204 -84325251 + (T)n Simple_repeat Simple_repeat 1 26 0 851 135 0 15 chr12 59461209 59461342 -84325113 - AluSq/x SINE Alu -181 131 1 1800 119 75 10 chr12 59462174 59462468 -84323987 - AluSp SINE Alu 0 313 1 22 0 0 0 chr12 59462642 59462664 -84323791 + AT_rich Low_complexity Low_complexity 1 22 0 1722 179 3 3 chr12 59463278 59463568 -84322887 - AluJb SINE Alu -17 295 6 964 197 46 60 chr12 59463577 59463861 -84322594 - AluJo SINE Alu -22 290 11 1432 220 29 22 chr12 59463943 59464256 -84322199 + 7SLRNA srpRNA srpRNA 1 315 -5 22 0 0 0 chr12 59464701 59464723 -84321732 + AT_rich Low_complexity Low_complexity 1 22 0 1794 124 21 10 chr12 59464781 59465072 -84321383 + AluSc SINE Alu 1 294 -15 1767 70 5 0 chr12 59465107 59465321 -84321134 + AluSq SINE Alu 1 215 -98 1528 123 3 140 chr12 59465332 59465682 -84320773 + AluJb SINE Alu 1 302 -10 716 155 0 0 chr12 59466129 59466232 -84320223 - AluJb SINE Alu -208 104 2 218 167 0 76 chr12 59466242 59466308 -84320147 + T-rich Low_complexity Low_complexity 2 62 0 1711 152 23 107 chr12 59466516 59466566 -84319889 - L1MB1 LINE L1 -2 6166 6113 2230 114 0 0 chr12 59466566 59466864 -84319591 - AluSq SINE Alu -15 298 1 1711 152 23 107 chr12 59466864 59467238 -84319217 - L1MB1 LINE L1 -55 6113 5779 2108 133 0 0 chr12 59467470 59467763 -84318692 + AluSx SINE Alu 1 293 -19 1927 139 7 3 chr12 59467763 59468057 -84318398 + AluSx SINE Alu 1 295 -17 1686 128 77 0 chr12 59468769 59469042 -84317413 + AluSx SINE Alu 1 294 -18 1919 89 4 33 chr12 59469135 59469405 -84317050 + AluSg SINE Alu 39 300 -10 242 283 150 9 chr12 59471439 59471552 -84314903 - L2 LINE L2 -22 3250 3122 972 181 97 71 chr12 59471726 59471827 -84314628 + AluJb SINE Alu 1 98 -214 1420 128 198 0 chr12 59471827 59472084 -84314371 - AluSq SINE Alu -5 308 1 972 181 97 71 chr12 59472084 59472220 -84314235 + AluJb SINE Alu 98 244 -68 2080 126 3 7 chr12 59472248 59472541 -84313914 + AluSx SINE Alu 1 292 -20 276 105 0 0 chr12 59472548 59472586 -84313869 - AluJb SINE Alu -39 263 226 666 206 28 21 chr12 59472588 59472729 -84313726 - AluJb SINE Alu -163 149 8 364 72 46 0 chr12 59472888 59472956 -84313499 + Alu SINE Alu 237 287 -14 573 186 88 0 chr12 59473578 59473691 -84312764 - MER8 DNA MER2_type 0 239 117 1700 107 0 5 chr12 59473769 59473993 -84312462 - AluSg/x SINE Alu -8 302 80 2111 127 17 0 chr12 59474301 59474593 -84311862 + AluSg SINE Alu 1 297 -13 2123 133 3 0 chr12 59474761 59475055 -84311400 + AluJb SINE Alu 11 305 -7 405 249 154 18 chr12 59475380 59475549 -84310906 - MIR SINE MIR -69 193 2 763 132 0 0 chr12 59475725 59475831 -84310624 + AluJb SINE Alu 3 108 -204 868 93 17 0 chr12 59475842 59475960 -84310495 + AluSg/x SINE Alu 183 302 -10 1140 103 9 3 chr12 59475994 59476228 -84310227 + AluSx SINE Alu 2 296 -16 2113 97 21 0 chr12 59476426 59476716 -84309739 + AluSp SINE Alu 2 297 -16 2275 76 34 0 chr12 59476718 59477009 -84309446 + AluSx SINE Alu 1 301 -11 638 223 97 40 chr12 59477119 59477419 -84309036 - LTR24B LTR ERV1 -8 568 252 2146 113 0 13 chr12 59480577 59480878 -84305577 - AluSg SINE Alu -4 306 10 835 109 0 8 chr12 59488924 59489043 -84297412 - L1PB1 LINE L1 -4 6147 6030 1888 133 3 17 chr12 59489091 59489385 -84297070 + AluSx SINE Alu 11 300 -12 409 183 46 24 chr12 59489724 59489877 -84296578 - MER20 DNA MER1_type 0 219 1 2500 64 0 19 chr12 59490972 59491283 -84295172 + AluY SINE Alu 1 305 -6 875 142 0 0 chr12 59491355 59491482 -84294973 + AluJb SINE Alu 1 127 -185 458 100 0 0 chr12 59491499 59491559 -84294896 + Alu SINE Alu 227 286 -23 1641 173 3 10 chr12 59541809 59542104 -84244351 + AluJb SINE Alu 8 300 -12 1141 158 67 0 chr12 59542111 59542320 -84244135 + Tigger1 DNA MER2_type 888 1110 -1308 * 2519 139 56 14 chr12 59542319 59542764 -84243691 + Tigger1 DNA MER2_type 1945 2408 -10 218 268 18 0 chr12 59543312 59543368 -84243087 + MIR3 SINE MIR 108 164 -44 2014 120 7 0 chr12 59543371 59543672 -84242783 + AluSx SINE Alu 1 303 -9 1716 129 52 0 chr12 59543677 59543949 -84242506 + AluSg SINE Alu 1 286 -24 534 213 45 7 chr12 59543966 59544121 -84242334 + L1M1 LINE L1 3331 3491 -4074 4912 132 21 29 chr12 59544240 59545253 -84241202 + L1MA1 LINE L1 5122 6122 -180 1517 178 15 34 chr12 59545872 59546198 -84240257 + MER61E LTR ERV1 240 559 -10 397 250 12 0 chr12 59546865 59546949 -84239506 + L2 LINE L2 3186 3270 -2 689 235 0 15 chr12 59547023 59547159 -84239296 - MLT1A1 LTR MaLR 0 365 232 3976 121 5 22 chr12 59547161 59547782 -84238673 - MER4B LTR ERV1 0 610 1 2401 120 12 0 chr12 59547782 59548115 -84238340 - MER4B-int LTR ERV1 0 6758 6422 291 252 17 52 chr12 59549692 59549807 -84236648 + L1ME4a LINE L1 5560 5670 -500 589 250 105 66 chr12 59549808 59550112 -84236343 - L2 LINE L2 0 3313 2998 5014 73 0 10 chr12 59555062 59555733 -84230722 + L1PA5 LINE L1 5491 6154 0 29 0 0 0 chr12 59555808 59555837 -84230618 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr12 59555945 59555993 -84230462 + AT_rich Low_complexity Low_complexity 1 48 0 3160 114 30 2 chr12 59556312 59556813 -84229642 + L1MA3 LINE L1 5790 6304 -1 707 243 74 78 chr12 59556829 59557344 -84229111 + L1M1 LINE L1 3697 4209 -3356 6748 154 12 18 chr12 59557521 59558621 -84227834 + MER52-int LTR ERV1 1698 2790 -4301 200 108 0 27 chr12 59558747 59558784 -84227671 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 344 278 225 26 chr12 59558861 59559052 -84227403 + L1ME4a LINE L1 5875 6103 -18 2016 86 7 4 chr12 59559052 59559331 -84227124 + AluSg SINE Alu 1 280 -30 28 0 0 0 chr12 59559887 59559915 -84226540 + GC_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 59559999 59560026 -84226429 + GC_rich Low_complexity Low_complexity 1 27 0 306 247 136 65 chr12 59561264 59561418 -84225037 - MIR SINE MIR -7 255 91 369 352 117 29 chr12 59561444 59561890 -84224565 - L2 LINE L2 -1 3312 2828 346 118 20 0 chr12 59562106 59562157 -84224298 + MER5B DNA MER1_type 12 63 -115 910 152 0 61 chr12 59562158 59562322 -84224133 + AluJb SINE Alu 144 297 -15 638 208 39 0 chr12 59562327 59562457 -84223998 + L1ME2 LINE L1 4704 4838 -1308 947 184 0 0 chr12 59562732 59562890 -84223565 - FRAM SINE Alu -19 157 1 495 257 43 14 chr12 59563045 59563209 -84223246 - L1M3c LINE L1 -5748 383 2 2610 210 41 47 chr12 59563214 59563375 -84223080 + L1ME2 LINE L1 4846 5006 -1158 2015 105 0 20 chr12 59563375 59563513 -84222942 + AluSx SINE Alu 1 140 -172 2014 111 16 25 chr12 59563513 59563828 -84222627 + AluSx SINE Alu 1 312 0 2015 105 0 20 chr12 59563828 59563985 -84222470 + AluSx SINE Alu 140 290 -22 2610 210 41 47 chr12 59563985 59564170 -84222285 + L1ME2 LINE L1 5006 5191 -973 1581 151 15 4 chr12 59564170 59564435 -84222020 + AluJo SINE Alu 25 292 -20 2610 210 41 47 chr12 59564435 59564591 -84221864 + L1ME2 LINE L1 5191 5346 -818 1804 176 0 6 chr12 59564591 59564717 -84221738 + AluJo SINE Alu 1 126 -186 2162 107 7 0 chr12 59564717 59565017 -84221438 + AluSq SINE Alu 3 304 -9 1804 176 0 6 chr12 59565017 59565203 -84221252 + AluJo SINE Alu 126 311 -1 2610 210 41 47 chr12 59565203 59565242 -84221213 + L1ME2 LINE L1 5346 5384 -780 2413 72 0 0 chr12 59565242 59565547 -84220908 + AluY SINE Alu 2 306 -5 2610 210 41 47 chr12 59565547 59566038 -84220417 + L1ME2 LINE L1 5384 5923 -241 473 315 95 25 chr12 59566266 59566593 -84219862 - L2 LINE L2 -1232 2082 1733 298 216 356 31 chr12 59567090 59567284 -84219171 - MLT1L LTR MaLR -1 614 358 434 239 361 5 chr12 59567311 59567516 -84218939 - MLT1L LTR MaLR -337 278 1 540 246 97 0 chr12 59567574 59567708 -84218747 + MIR SINE MIR 4 150 -112 792 218 167 0 chr12 59567708 59567882 -84218573 + MER3 DNA MER1_type 1 203 -6 180 208 123 75 chr12 59567883 59567989 -84218466 + MIR SINE MIR 152 262 0 * 600 333 107 29 chr12 59567987 59568034 -84218421 + L2 LINE L2 574 616 -2698 1951 138 3 6 chr12 59568034 59568346 -84218109 - AluJb SINE Alu -1 311 1 600 333 107 29 chr12 59568346 59568775 -84217680 + L2 LINE L2 616 1087 -2227 297 313 61 8 chr12 59568784 59568915 -84217540 + L2 LINE L2 2621 2758 -556 187 352 47 39 chr12 59568928 59569056 -84217399 + L2 LINE L2 2894 3022 -250 757 132 35 0 chr12 59569056 59569170 -84217285 + FLAM_C SINE Alu 1 118 -15 298 0 48 0 chr12 59569171 59569213 -84217242 + (GA)n Simple_repeat Simple_repeat 1 44 0 216 279 39 48 chr12 59569698 59569802 -84216653 - L2 LINE L2 -52 3261 3159 1841 112 36 4 chr12 59569852 59570153 -84216302 - AluSx SINE Alu 0 310 1 509 179 0 109 chr12 59570166 59570230 -84216225 + MER112 DNA MER1_type 17 86 -174 2044 114 27 0 chr12 59570230 59570527 -84215928 + AluSx SINE Alu 1 305 -7 509 179 0 109 chr12 59570527 59570646 -84215809 + MER112 DNA MER1_type 86 180 -80 2110 132 0 22 chr12 59570638 59570957 -84215498 - AluSx SINE Alu 0 312 1 902 126 0 0 chr12 59571032 59571151 -84215304 - FLAM_C SINE Alu -18 125 7 1449 181 37 85 chr12 59571164 59571574 -84214881 + MLT1B LTR MaLR 1 390 0 279 0 0 0 chr12 59571668 59571699 -84214756 + (TG)n Simple_repeat Simple_repeat 1 31 0 2160 91 0 4 chr12 59571699 59571963 -84214492 - AluSc SINE Alu -33 276 14 304 266 16 0 chr12 59572074 59572138 -84214317 - MER96 DNA MER1_type? -85 90 26 709 257 103 0 chr12 59572798 59573012 -84213443 - MIR SINE MIR -26 236 1 608 113 15 15 chr12 59573363 59573496 -84212959 + (TG)n Simple_repeat Simple_repeat 2 134 0 309 51 0 0 chr12 59574323 59574362 -84212093 + (TG)n Simple_repeat Simple_repeat 1 39 0 211 301 5 65 chr12 59575884 59576070 -84210385 + CT-rich Low_complexity Low_complexity 4 178 0 569 292 92 5 chr12 59576166 59576361 -84210094 + MIR SINE MIR 51 262 0 2298 83 0 13 chr12 59576395 59576722 -84209733 - AluY SINE Alu 0 311 1 256 331 99 0 chr12 59576955 59577097 -84209358 - MIR3 SINE MIR -50 158 3 309 315 35 76 chr12 59579589 59579786 -84206669 + MER91A DNA MER1_type 8 196 0 726 248 27 62 chr12 59581365 59581623 -84204832 - MIR SINE MIR -1 261 13 2332 98 3 0 chr12 59581774 59582071 -84204384 + AluSg SINE Alu 1 298 -12 1727 175 3 11 chr12 59582071 59582176 -84204279 + AluJo SINE Alu 30 134 -218 2494 70 3 0 chr12 59582176 59582476 -84203979 + AluY SINE Alu 1 301 -10 1727 175 3 11 chr12 59582476 59582695 -84203760 + AluJo SINE Alu 134 352 0 2287 117 3 0 chr12 59583675 59583975 -84202480 + AluSx SINE Alu 1 301 -11 1797 123 83 0 chr12 59583975 59584252 -84202203 + AluSx SINE Alu 1 300 -12 2441 107 0 0 chr12 59584252 59584561 -84201894 + AluSc SINE Alu 1 309 0 878 233 24 5 chr12 59584612 59584834 -84201621 - MIR SINE MIR 0 262 37 201 94 0 0 chr12 59584842 59584874 -84201581 + (TTATG)n Simple_repeat Simple_repeat 4 35 0 1072 53 27 0 chr12 59584878 59585028 -84201427 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 916 253 61 4 chr12 59585169 59585414 -84201041 + MIR SINE MIR 4 262 0 699 212 138 52 chr12 59587275 59587494 -84198961 + MIR SINE MIR 12 253 -9 1057 181 131 22 chr12 59587494 59587737 -84198718 - MER7A DNA MER2_type -2692 346 62 1329 161 146 15 chr12 59587737 59587997 -84198458 - AluJo SINE Alu -18 294 1 1057 181 131 22 chr12 59587997 59588067 -84198388 - MER7A DNA MER2_type -2976 62 1 699 212 138 52 chr12 59588067 59588078 -84198377 + MIR SINE MIR 253 262 0 393 268 95 53 chr12 59588269 59588459 -84197996 - MIR3 SINE MIR -7 201 4 211 209 0 0 chr12 59591230 59591273 -84195182 + CT-rich Low_complexity Low_complexity 1 43 0 2269 47 25 14 chr12 59595127 59595436 -84191019 - AluSg SINE Alu 0 312 1 192 132 0 59 chr12 59596650 59596718 -84189737 + (CGGGGG)n Simple_repeat Simple_repeat 4 67 0 217 220 20 0 chr12 59596752 59596802 -84189653 + G-rich Low_complexity Low_complexity 3 53 0 262 318 0 47 chr12 59600082 59600167 -84186288 - L2 LINE L2 -81 3191 3111 676 200 31 6 chr12 59600304 59600464 -84185991 + FRAM SINE Alu 1 164 -2 727 162 233 18 chr12 59600665 59600893 -84185562 - MER5C DNA MER1_type 0 324 48 282 324 147 43 chr12 59600935 59601281 -84185174 - L2 LINE L2 -514 2800 2419 2090 121 4 0 chr12 59601385 59601705 -84184750 + AluSx SINE Alu 1 321 0 1233 132 0 0 chr12 59601705 59601872 -84184583 + AluSq SINE Alu 133 299 -14 775 204 19 51 chr12 59601914 59602130 -84184325 + MER46C DNA MER2_type 79 287 -51 533 269 167 14 chr12 59602134 59602409 -84184046 + MARNA DNA Mariner 262 578 -8 246 217 0 0 chr12 59602529 59602598 -84183857 + (TA)n Simple_repeat Simple_repeat 2 70 0 2002 150 10 29 chr12 59602603 59602917 -84183538 - AluJb SINE Alu -4 308 1 1787 189 7 0 chr12 59602919 59603215 -84183240 - AluJb SINE Alu -14 298 1 2104 154 97 20 chr12 59603215 59603394 -84183061 - L1MC3 LINE L1 -12 7773 7609 2083 95 7 27 chr12 59603394 59603711 -84182744 - AluSg SINE Alu 0 310 1 2556 75 0 0 chr12 59603717 59604022 -84182433 - AluY SINE Alu -6 305 1 2104 154 97 20 chr12 59604022 59604105 -84182350 - L1MC3 LINE L1 -180 7605 7530 2369 100 3 0 chr12 59604105 59604406 -84182049 + AluSp SINE Alu 1 302 -11 2104 154 97 20 chr12 59604406 59604640 -84181815 - L1MC3 LINE L1 -255 7530 7230 2125 132 0 13 chr12 59604737 59605040 -84181415 - AluSx SINE Alu -13 299 1 1372 88 0 0 chr12 59605049 59605220 -84181235 - AluSq SINE Alu -9 304 134 2553 54 0 0 chr12 59605220 59605518 -84180937 - AluY SINE Alu -13 298 1 22 0 0 0 chr12 59605598 59605620 -84180835 + GC_rich Low_complexity Low_complexity 1 22 0 1715 112 67 45 chr12 59605627 59605751 -84180704 - AluSx SINE Alu -37 275 155 2152 99 17 3 chr12 59605751 59606043 -84180412 - AluSq SINE Alu -17 296 1 1715 112 67 45 chr12 59606043 59606187 -84180268 - AluSx SINE Alu -157 155 1 528 173 203 8 chr12 59606191 59606324 -84180131 - FRAM SINE Alu -6 160 2 1921 98 64 8 chr12 59606454 59606746 -84179709 - AluSx SINE Alu 0 309 3 312 64 21 0 chr12 59606752 59606799 -84179656 - AluSg/x SINE Alu -169 131 84 1205 190 0 35 chr12 59606799 59607025 -84179430 - AluJo SINE Alu -92 220 3 324 0 0 0 chr12 59607032 59607068 -84179387 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 409 103 0 0 chr12 59607072 59607130 -84179325 - Alu SINE Alu -28 284 227 2218 98 0 7 chr12 59607135 59607460 -84178995 - AluY SINE Alu 0 323 1 2204 101 3 7 chr12 59607462 59607759 -84178696 - AluSx SINE Alu -16 296 1 2072 125 0 42 chr12 59607960 59608272 -84178183 + AluSx SINE Alu 1 299 -13 1846 157 6 66 chr12 59608276 59608608 -84177847 + AluJo SINE Alu 1 312 0 649 247 108 14 chr12 59608696 59608890 -84177565 + MIR SINE MIR 3 222 -40 2344 95 3 16 chr12 59608890 59609206 -84177249 - AluSp SINE Alu 0 313 2 649 247 108 14 chr12 59609206 59609234 -84177221 + MIR SINE MIR 222 246 -16 1197 71 60 0 chr12 59609235 59609403 -84177052 + AluY SINE Alu 119 296 -15 2313 118 0 6 chr12 59610095 59610409 -84176046 - AluSx SINE Alu 0 312 1 657 105 0 0 chr12 59610724 59610819 -84175636 - AluSg/x SINE Alu -14 298 204 22 35 0 0 chr12 59610849 59610878 -84175577 + AT_rich Low_complexity Low_complexity 1 29 0 2390 95 0 3 chr12 59610886 59611180 -84175275 + AluSx SINE Alu 1 293 -19 2427 81 0 3 chr12 59613700 59613998 -84172457 + AluY SINE Alu 2 298 -13 1307 153 49 0 chr12 59614008 59614211 -84172244 + AluSg/x SINE Alu 84 296 -14 1934 134 0 4 chr12 59614494 59614762 -84171693 + AluJb SINE Alu 1 267 -45 1438 174 36 4 chr12 59614934 59615210 -84171245 + Tigger1 DNA MER2_type 2 286 -2132 2589 60 3 0 chr12 59615222 59615521 -84170934 - AluY SINE Alu -11 300 1 2109 134 36 25 chr12 59615521 59615879 -84170576 - THE1B LTR MaLR -2 362 1 * 4121 152 63 21 chr12 59615879 59616283 -84170172 + Tigger1 DNA MER2_type 282 667 -1751 2301 78 0 4 chr12 59616283 59616592 -84169863 - AluY SINE Alu 0 308 1 4121 152 63 21 chr12 59616592 59616764 -84169691 + Tigger1 DNA MER2_type 667 830 -1588 1845 133 79 4 chr12 59616764 59617043 -84169412 + AluJb SINE Alu 1 300 -12 4121 152 63 21 chr12 59617043 59617259 -84169196 + Tigger1 DNA MER2_type 830 1110 -1308 2382 142 56 14 chr12 59617258 59617703 -84168752 + Tigger1 DNA MER2_type 1945 2408 -10 * 1865 101 26 88 chr12 59619714 59620022 -84166433 - AluSx SINE Alu -23 289 1 2220 123 0 0 chr12 59620075 59620367 -84166088 - AluSx SINE Alu -20 292 1 2171 111 7 7 chr12 59620557 59620845 -84165610 - AluSc SINE Alu -20 289 2 2410 97 3 0 chr12 59620846 59621154 -84165301 - AluSp SINE Alu -4 309 1 21 71 0 0 chr12 59621298 59621340 -84165115 + AT_rich Low_complexity Low_complexity 1 42 0 259 57 0 0 chr12 59621396 59621431 -84165024 - Alu SINE Alu -11 297 263 23 33 0 0 chr12 59626731 59626761 -84159694 + AT_rich Low_complexity Low_complexity 1 30 0 2183 108 14 0 chr12 59627542 59627839 -84158616 - AluSq SINE Alu -12 301 1 1913 106 11 11 chr12 59627851 59628124 -84158331 - AluSx SINE Alu -4 308 36 3062 41 0 5 chr12 59628393 59628805 -84157650 - L1PA4 LINE L1 -746 5400 4991 6298 38 7 0 chr12 59628805 59629548 -84156907 + L1PA4 LINE L1 5404 6154 -1 426 210 230 0 chr12 59629565 59629665 -84156790 - MER5A DNA MER1_type -1 188 66 737 168 0 38 chr12 59629665 59629796 -84156659 - FRAM SINE Alu -13 163 38 311 230 14 0 chr12 59629796 59629870 -84156585 - MER5A DNA MER1_type -114 75 1 184 188 0 0 chr12 59629870 59629902 -84156553 + MIR SINE MIR 200 231 -31 2355 92 0 13 chr12 59630131 59630436 -84156019 - AluSq SINE Alu -12 301 1 818 169 0 13 chr12 59630463 59630617 -84155838 - L1ME1 LINE L1 -4 6162 6011 488 239 0 26 chr12 59630773 59630890 -84155565 - MER81 DNA DNA 0 114 1 338 302 53 23 chr12 59631034 59631175 -84155280 + MIR SINE MIR 30 170 -58 253 306 14 0 chr12 59631654 59631726 -84154729 + MIR SINE MIR 48 120 -142 903 107 8 0 chr12 59632042 59632163 -84154292 - FLAM_C SINE Alu -21 122 1 454 252 86 36 chr12 59632857 59632996 -84153459 + MIR SINE MIR 96 241 -21 318 50 0 0 chr12 59636493 59636533 -84149922 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 381 354 68 14 chr12 59636533 59636680 -84149775 - L2 LINE L2 -17 3255 3101 1956 141 3 0 chr12 59637890 59638174 -84148281 + AluSx SINE Alu 12 296 -16 309 301 68 0 chr12 59638917 59639020 -84147435 + MIR SINE MIR 106 215 -47 842 140 0 67 chr12 59639808 59639958 -84146497 + FLAM_C SINE Alu 2 141 -2 3455 116 40 6 chr12 59640030 59640580 -84145875 + L1MB7 LINE L1 5609 6177 -7 234 282 115 0 chr12 59640665 59640743 -84145712 + MIR SINE MIR 94 180 -82 277 272 221 0 chr12 59642233 59642369 -84144086 - L1MC4a LINE L1 -1883 5925 5760 1162 151 16 5 chr12 59642655 59642841 -84143614 + MER5A DNA MER1_type 2 189 0 219 313 0 0 chr12 59645273 59645337 -84141118 + L2 LINE L2 3209 3272 0 2282 95 11 0 chr12 59647560 59647878 -84138577 - AluSq SINE Alu 0 321 1 1996 143 0 7 chr12 59647880 59648174 -84138281 - AluJb SINE Alu -20 292 1 822 236 134 0 chr12 59648175 59648391 -84138064 - MIR SINE MIR -5 257 13 1999 145 0 16 chr12 59648906 59649216 -84137239 + AluJo SINE Alu 1 305 -7 309 271 44 118 chr12 59649228 59649704 -84136751 + L1MC4 LINE L1 7602 8042 0 352 235 204 15 chr12 59649716 59649848 -84136607 + L2 LINE L2 2698 2854 -460 1323 99 12 0 chr12 59649866 59650037 -84136418 - AluSg/x SINE Alu -12 298 126 630 231 58 76 chr12 59650071 59650296 -84136159 + L2 LINE L2 3092 3312 -1 1771 145 16 10 chr12 59651626 59651937 -84134518 - L1MB3 LINE L1 -7 6176 5864 235 356 0 0 chr12 59651943 59652016 -84134439 - L2 LINE L2 -1 3312 3240 759 208 38 6 chr12 59652395 59652578 -84133877 - MER5A DNA MER1_type 0 189 1 222 221 0 44 chr12 59655701 59655769 -84130686 + CT-rich Low_complexity Low_complexity 2 66 0 1866 174 0 23 chr12 59657506 59657811 -84128644 - AluJo SINE Alu -14 298 1 640 300 59 12 chr12 59657816 59658069 -84128386 - L2 LINE L2 -12 3301 3037 393 263 75 48 chr12 59658243 59658429 -84128026 + MIR SINE MIR 20 210 -52 2343 108 0 7 chr12 59658740 59659046 -84127409 + AluSg SINE Alu 1 304 -6 737 183 85 26 chr12 59659530 59659683 -84126772 - LTR29 LTR ERV1 0 622 488 1865 111 0 8 chr12 59659685 59659947 -84126508 - AluSg SINE Alu -10 300 41 2321 112 0 3 chr12 59660240 59660543 -84125912 - AluSq SINE Alu -11 302 1 584 173 203 8 chr12 59660547 59660680 -84125775 - FRAM SINE Alu -6 160 2 1908 98 64 8 chr12 59660810 59661102 -84125353 - AluSx SINE Alu 0 309 3 1058 91 8 0 chr12 59661108 59661240 -84125215 - AluSq/x SINE Alu -179 133 1 2947 158 63 27 chr12 59661241 59661412 -84125043 - Tigger1 DNA MER2_type -1538 880 717 2286 78 0 4 chr12 59661412 59661721 -84124734 + AluY SINE Alu 1 308 0 2947 158 63 27 chr12 59661721 59662126 -84124329 - Tigger1 DNA MER2_type -1701 717 282 332 178 79 0 chr12 59662126 59662227 -84124228 + THE1A LTR MaLR 1 109 -246 1307 116 16 5 chr12 59662468 59662658 -84123797 + AluSp SINE Alu 105 296 -17 711 153 145 0 chr12 59662658 59662782 -84123673 + AluSg/x SINE Alu 134 275 -37 22 0 0 0 chr12 59662789 59662811 -84123644 + GC_rich Low_complexity Low_complexity 1 22 0 2482 63 0 0 chr12 59662891 59663190 -84123265 + AluY SINE Alu 1 299 -12 1701 175 3 14 chr12 59663190 59663296 -84123159 + AluJo SINE Alu 30 136 -216 2482 70 3 0 chr12 59663296 59663596 -84122859 + AluY SINE Alu 1 301 -10 1701 175 3 14 chr12 59663596 59663815 -84122640 + AluJo SINE Alu 136 352 0 2281 117 3 0 chr12 59664794 59665094 -84121361 + AluSx SINE Alu 1 301 -11 1791 123 83 0 chr12 59665094 59665371 -84121084 + AluSx SINE Alu 1 300 -12 2436 107 0 0 chr12 59665371 59665680 -84120775 + AluSc SINE Alu 1 309 0 923 233 24 5 chr12 59665731 59665953 -84120502 - MIR SINE MIR 0 262 37 201 94 0 0 chr12 59665961 59665993 -84120462 + (TTATG)n Simple_repeat Simple_repeat 4 35 0 1072 53 27 0 chr12 59665997 59666147 -84120308 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 974 237 65 8 chr12 59666288 59666533 -84119922 + MIR SINE MIR 4 262 0 2344 141 56 16 chr12 59668459 59668905 -84117550 - Tigger1 DNA MER2_type -10 2408 1945 1894 158 52 13 chr12 59668904 59669120 -84117335 - Tigger1 DNA MER2_type -1308 1110 871 * 1836 133 79 4 chr12 59669120 59669399 -84117056 - AluJb SINE Alu -12 300 1 1894 158 52 13 chr12 59669399 59669567 -84116888 - Tigger1 DNA MER2_type -1547 871 711 2328 78 7 3 chr12 59669571 59669866 -84116589 + AluY SINE Alu 1 296 -15 2307 118 0 6 chr12 59670558 59670872 -84115583 - AluSx SINE Alu 0 312 1 628 137 0 68 chr12 59671184 59671301 -84115154 - L1MB3 LINE L1 -31 6152 6044 1598 164 53 33 chr12 59671370 59671674 -84114781 + AluJo SINE Alu 1 310 -2 2216 132 7 0 chr12 59671676 59671986 -84114469 + AluSx SINE Alu 1 312 0 401 289 29 0 chr12 59673173 59673277 -84113178 + MIR SINE MIR 23 129 -133 434 209 0 9 chr12 59673280 59673395 -84113060 - L1MA4A LINE L1 0 6303 6190 4602 153 11 66 chr12 59673399 59674561 -84111894 - L1PB4 LINE L1 -101 6055 4944 221 282 56 0 chr12 59674562 59674633 -84111822 + MIR SINE MIR 131 205 -57 751 243 85 6 chr12 59674862 59675039 -84111416 - MIR SINE MIR 0 262 72 210 272 22 33 chr12 59675848 59675940 -84110515 - MIR3 SINE MIR 0 208 118 2162 134 96 18 chr12 59677301 59677696 -84108759 - MSTB LTR MaLR 0 426 1 224 114 68 0 chr12 59678899 59678943 -84107512 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 233 326 62 7 chr12 59679045 59679189 -84107266 - L1ME LINE L1 -262 5859 5708 234 318 0 28 chr12 59679853 59679960 -84106495 + CT-rich Low_complexity Low_complexity 1 104 0 2216 99 0 3 chr12 59685936 59686240 -84100215 + AluSc SINE Alu 1 303 -6 761 267 35 10 chr12 59686710 59686912 -84099543 + L2 LINE L2 3107 3313 0 1844 181 40 91 chr12 59687019 59687544 -84098911 - MLT1D LTR MaLR -6 499 2 295 293 121 26 chr12 59687972 59688088 -84098367 - MIR SINE MIR -56 152 26 52 0 0 0 chr12 59688177 59688229 -84098226 + AT_rich Low_complexity Low_complexity 1 52 0 297 109 0 0 chr12 59688298 59688344 -84098111 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 1639 151 0 54 chr12 59688346 59688644 -84097811 - AluJo SINE Alu -30 282 1 225 159 45 0 chr12 59688673 59688717 -84097738 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 215 222 93 19 chr12 59688885 59688939 -84097516 - MER91 DNA MER1_type 0 190 133 242 236 194 0 chr12 59690276 59690348 -84096107 - MIR SINE MIR -123 139 54 986 261 43 0 chr12 59690479 59690686 -84095769 + MIR SINE MIR 3 218 -44 302 263 158 58 chr12 59691001 59691382 -84095073 - L2 LINE L2 -32 3281 2863 760 271 106 66 chr12 59691645 59692146 -84094309 - MLT1K LTR MaLR -28 560 40 252 340 39 46 chr12 59692703 59692856 -84093599 - L2 LINE L2 -218 3054 2903 1968 123 0 0 chr12 59694667 59694951 -84091504 - AluSx SINE Alu -24 288 5 209 279 150 29 chr12 59694966 59695074 -84091381 - MIR SINE MIR -108 154 31 1321 137 0 0 chr12 59695131 59695361 -84091094 - AluSg/x SINE Alu 0 316 87 343 235 12 24 chr12 59696353 59696438 -84090017 - L2 LINE L2 -3 3310 3227 181 265 61 0 chr12 59696542 59696588 -84089867 - L3 LINE CR1 -3 1574 1526 386 353 33 0 chr12 59696588 59696738 -84089717 - MER5A DNA MER1_type 0 189 35 254 324 56 9 chr12 59696764 59696872 -84089583 - MIR SINE MIR -66 142 30 323 266 85 21 chr12 59697117 59697211 -84089244 - MLT1D LTR MaLR -405 100 1 245 206 48 0 chr12 59697255 59697318 -84089137 - MLT1L LTR MaLR -4 611 546 231 250 170 36 chr12 59697522 59697634 -84088821 - MLT1L LTR MaLR -347 268 142 316 202 112 34 chr12 59698479 59698568 -84087887 - HAL1 LINE L1 -426 2081 1986 656 286 82 0 chr12 59698570 59698776 -84087679 - L2 LINE L2 -575 2739 2517 596 274 40 54 chr12 59698797 59699020 -84087435 - L2 LINE L2 -2 3311 3092 443 302 19 0 chr12 59699037 59699056 -84087399 - L1MA10 LINE L1 0 6334 6316 847 200 18 59 chr12 59699056 59699276 -84087179 - L1ME2 LINE L1 -11 6153 5943 209 294 20 0 chr12 59699282 59699333 -84087122 - L2 LINE L2 -603 2711 2660 743 234 63 49 chr12 59699398 59699603 -84086852 - MIR SINE MIR 0 262 55 283 254 0 0 chr12 59699617 59699676 -84086779 - MIR SINE MIR -1 261 203 2834 58 0 6 chr12 59699683 59700042 -84086413 - L1PA8 LINE L1 0 6172 5816 580 230 0 17 chr12 59700046 59700220 -84086235 - L1PA3 LINE L1 -3 6152 5982 22 0 0 0 chr12 59700387 59700409 -84086046 + AT_rich Low_complexity Low_complexity 1 22 0 334 322 14 14 chr12 59700559 59700705 -84085750 + GA-rich Low_complexity Low_complexity 2 147 0 219 326 0 58 chr12 59700799 59700989 -84085466 + GA-rich Low_complexity Low_complexity 2 180 0 6712 69 12 13 chr12 59701070 59702546 -84083909 - L1PA4 LINE L1 -124 6031 4920 199 164 179 60 chr12 59702548 59702615 -84083840 - MIR SINE MIR -132 130 56 1485 161 79 10 chr12 59702939 59703230 -84083225 + AluJb SINE Alu 1 311 -1 1978 131 85 11 chr12 59703397 59703772 -84082683 - MER57A LTR ERV1 0 403 1 1387 193 13 51 chr12 59703794 59704105 -84082350 + AluJo SINE Alu 1 299 -13 1798 162 0 10 chr12 59704636 59704938 -84081517 + AluJo SINE Alu 11 309 -3 3319 165 54 3 chr12 59705000 59705589 -84080866 + LTR31 LTR ERV1 1 619 0 252 232 30 37 chr12 59705811 59705975 -84080480 + (TTATA)n Simple_repeat Simple_repeat 4 166 0 238 155 31 70 chr12 59706009 59706138 -84080317 + (TATAA)n Simple_repeat Simple_repeat 2 125 0 2173 114 0 0 chr12 59706163 59706462 -84079993 + AluSx SINE Alu 1 299 -13 3863 39 2 0 chr12 59706580 59707039 -84079416 - L1PA4 LINE L1 -2 6153 5694 3875 23 0 0 chr12 59707041 59707484 -84078971 + L1PA4 LINE L1 5275 5717 -438 1399 207 47 7 chr12 59708011 59708311 -84078144 - AluJb SINE Alu 0 312 1 261 250 24 12 chr12 59708770 59708854 -84077601 + CT-rich Low_complexity Low_complexity 4 88 0 1294 226 199 19 chr12 59709000 59709416 -84077039 - MLT1J LTR MaLR -20 491 1 267 230 72 58 chr12 59709707 59709846 -84076609 - L1ME1 LINE L1 0 6166 6026 * 612 77 0 0 chr12 59709845 59709923 -84076532 - THE1B-int LTR MaLR -1502 78 1 2301 130 8 30 chr12 59709925 59710295 -84076160 - THE1B LTR MaLR -2 362 1 874 108 0 23 chr12 59710295 59710425 -84076030 - THE1C LTR MaLR -248 127 1 6704 119 190 1 chr12 59710425 59711499 -84074956 - THE1C-int LTR MaLR 0 1580 304 957 231 53 22 chr12 59711500 59711778 -84074677 - MER52C LTR ERV1 -677 601 29 314 222 16 0 chr12 59712391 59712454 -84074001 - MER52A LTR ERV1 -1691 64 1 1423 121 5 5 chr12 59712456 59712654 -84073801 - MER52A-int LTR ERV1 -3 7088 6891 331 170 0 0 chr12 59712651 59712704 -84073751 - MER52A-int LTR ERV1 -462 5484 5432 * 721 195 7 7 chr12 59712709 59712858 -84073597 - MER52A-int LTR ERV1 -1256 4690 4542 * 4634 199 67 54 chr12 59712854 59713680 -84072775 - MER52A-int LTR ERV1 -2417 5021 4207 1672 133 44 48 chr12 59713680 59713974 -84072481 - AluSx SINE Alu -19 293 1 4634 199 67 54 chr12 59713974 59714317 -84072138 - MER52A-int LTR ERV1 -3231 4207 2226 1355 173 58 0 chr12 59714316 59714559 -84071896 - MER52A-int LTR ERV1 -3938 3599 3343 * 6251 70 7 16 chr12 59714649 59715299 -84071156 - L1PA8A LINE L1 0 6131 5488 2143 123 0 0 chr12 59715299 59715600 -84070855 - AluSx SINE Alu -11 301 1 6251 70 7 16 chr12 59715600 59715779 -84070676 - L1PA8A LINE L1 -643 5488 5309 2261 150 29 21 chr12 59715780 59716234 -84070221 - MER52A-int LTR ERV1 -3276 2670 1419 807 150 6 50 chr12 59716236 59716396 -84070059 - MER52A-int LTR ERV1 -4804 1142 990 5279 148 38 27 chr12 59716457 59717377 -84069078 - MER52A-int LTR ERV1 -5413 1792 717 9732 161 9 8 chr12 59717377 59718879 -84067576 - MER52A-int LTR ERV1 -3890 3201 1698 4055 121 20 0 chr12 59718995 59719550 -84066905 - MER52A-int LTR ERV1 -6520 571 6 5270 187 43 12 chr12 59719554 59720504 -84065951 - MER52A LTR ERV1 0 1755 776 287 246 0 0 chr12 59720596 59720653 -84065802 - MER52A LTR ERV1 -1694 61 5 2444 118 35 40 chr12 59720653 59721078 -84065377 + L1PA16 LINE L1 5735 6157 -9 180 0 0 0 chr12 59721088 59721108 -84065347 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2178 170 13 42 chr12 59721230 59721678 -84064777 + MER65C LTR ERV1 27 461 0 570 316 19 81 chr12 59721974 59722281 -84064174 - L2 LINE L2 0 3272 2985 2176 92 11 0 chr12 59723959 59724277 -84062178 - AluSq SINE Alu 0 321 1 879 163 0 0 chr12 59724277 59724418 -84062037 - FLAM_C SINE Alu 0 143 3 324 0 0 0 chr12 59724425 59724461 -84061994 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 429 103 0 0 chr12 59724465 59724523 -84061932 - Alu SINE Alu -28 281 224 2087 98 0 7 chr12 59724528 59724857 -84061598 - AluY SINE Alu 0 327 1 2072 101 3 7 chr12 59724859 59725156 -84061299 - AluSx SINE Alu -16 296 1 1944 125 0 42 chr12 59725357 59725669 -84060786 + AluSx SINE Alu 1 299 -13 246 232 36 0 chr12 59725673 59725729 -84060726 + AluS SINE Alu 1 58 -245 1687 170 0 0 chr12 59725729 59726005 -84060450 + AluJo SINE Alu 37 312 0 639 247 108 14 chr12 59726093 59726287 -84060168 + MIR SINE MIR 3 222 -40 2203 95 3 16 chr12 59726287 59726603 -84059852 - AluSp SINE Alu 0 313 2 639 247 108 14 chr12 59726603 59726631 -84059824 + MIR SINE MIR 222 246 -16 1127 71 60 0 chr12 59726632 59726800 -84059655 + AluY SINE Alu 119 296 -15 1978 113 0 69 chr12 59727492 59727827 -84058628 - AluSx SINE Alu 0 312 1 696 105 0 0 chr12 59728142 59728237 -84058218 - AluSg/x SINE Alu -14 295 201 22 35 0 0 chr12 59728267 59728296 -84058159 + AT_rich Low_complexity Low_complexity 1 29 0 2247 95 0 3 chr12 59728304 59728598 -84057857 + AluSx SINE Alu 1 293 -19 2289 81 0 3 chr12 59731120 59731418 -84055037 + AluY SINE Alu 2 298 -13 1228 153 49 0 chr12 59731428 59731631 -84054824 + AluSg/x SINE Alu 84 296 -14 1813 134 0 4 chr12 59731914 59732182 -84054273 + AluJb SINE Alu 1 267 -45 1436 174 36 4 chr12 59732354 59732630 -84053825 + Tigger1 DNA MER2_type 2 286 -2132 2253 89 0 7 chr12 59732642 59732944 -84053511 - AluY SINE Alu -11 300 1 2072 101 3 7 chr12 59732946 59733243 -84053212 - AluSx SINE Alu -16 296 1 365 241 17 43 chr12 59737298 59737414 -84049041 + L1MC4a LINE L1 5558 5670 -500 490 286 98 50 chr12 59737415 59737712 -84048743 - L2 LINE L2 0 3313 3003 235 325 48 12 chr12 59737734 59737817 -84048638 + L1MC4a LINE L1 5705 5790 -2018 21 36 0 0 chr12 59738425 59738453 -84048002 + GC_rich Low_complexity Low_complexity 1 28 0 268 250 0 70 chr12 59739778 59739878 -84046577 + G-rich Low_complexity Low_complexity 6 98 0 198 0 0 0 chr12 59740621 59740643 -84045812 + (T)n Simple_repeat Simple_repeat 1 22 0 403 143 0 0 chr12 59741953 59742009 -84044446 - AluS SINE Alu -31 280 225 323 335 79 19 chr12 59742177 59742392 -84044063 + L1MC4a LINE L1 5705 5932 -1876 427 198 174 0 chr12 59743054 59743175 -84043280 - MIR3 SINE MIR -17 191 50 284 283 40 0 chr12 59744815 59744914 -84041541 - MIR SINE MIR -61 147 45 2205 99 3 3 chr12 59745587 59745890 -84040565 + AluSx SINE Alu 2 304 -8 1357 152 105 14 chr12 59746014 59746310 -84040145 + MER33 DNA MER1_type 1 323 -1 806 196 0 0 chr12 59746380 59746513 -84039942 + FLAM_C SINE Alu 1 133 0 1754 137 0 0 chr12 59748810 59749066 -84037389 - AluSx SINE Alu -16 296 41 2310 83 3 0 chr12 59749359 59749660 -84036795 - AluSp SINE Alu -11 302 1 618 261 76 38 chr12 59749661 59749872 -84036583 - MIR SINE MIR -4 258 40 232 364 84 0 chr12 59750036 59750190 -84036265 - L2 LINE L2 -5 3267 3101 360 281 59 22 chr12 59751425 59751560 -84034895 - MIR SINE MIR -25 237 98 2384 81 0 3 chr12 59751616 59751925 -84034530 + AluY SINE Alu 1 308 -3 606 123 0 28 chr12 59751936 59752179 -84034276 + AluSx SINE Alu 5 308 -2 228 296 43 0 chr12 59752268 59752383 -84034072 + GA-rich Low_complexity Low_complexity 2 121 0 240 59 0 0 chr12 59753981 59754015 -84032440 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 268 250 0 70 chr12 59758141 59758241 -84028214 + G-rich Low_complexity Low_complexity 6 98 0 2156 95 11 0 chr12 59759263 59759581 -84026874 - AluSq SINE Alu 0 321 1 1884 146 0 7 chr12 59759583 59759877 -84026578 - AluSx SINE Alu -20 292 1 762 236 134 0 chr12 59759878 59760094 -84026361 - MIR SINE MIR -5 257 13 1887 145 0 16 chr12 59760609 59760919 -84025536 + AluJo SINE Alu 1 305 -7 373 271 44 118 chr12 59760931 59761407 -84025048 + L1MC4 LINE L1 7602 8042 0 315 227 204 15 chr12 59761419 59761551 -84024904 + L2 LINE L2 2698 2854 -460 1248 99 12 0 chr12 59761569 59761740 -84024715 - AluSg/x SINE Alu -12 300 128 593 249 53 71 chr12 59761774 59761999 -84024456 + L2 LINE L2 3092 3312 -1 1831 145 16 10 chr12 59763329 59763640 -84022815 - L1MB3 LINE L1 -7 6176 5864 231 356 0 0 chr12 59763646 59763719 -84022736 - L2 LINE L2 -1 3312 3240 791 208 38 6 chr12 59764098 59764281 -84022174 - MER5A DNA MER1_type 0 189 1 222 221 0 44 chr12 59767403 59767471 -84018984 + CT-rich Low_complexity Low_complexity 2 66 0 1753 174 0 23 chr12 59769207 59769512 -84016943 - AluJo SINE Alu -14 298 1 579 313 56 11 chr12 59769517 59769785 -84016670 - L2 LINE L2 -12 3301 3022 370 339 48 21 chr12 59769944 59770130 -84016325 + MIR SINE MIR 20 210 -52 2209 108 0 7 chr12 59770441 59770747 -84015708 + AluSg SINE Alu 1 304 -6 3254 114 145 31 chr12 59771231 59771386 -84015069 - MER39B LTR ERV1 0 653 517 2070 109 0 7 chr12 59771386 59771688 -84014767 - AluSg SINE Alu -10 300 1 3254 114 145 31 chr12 59771688 59772118 -84014337 - MER39B LTR ERV1 -136 517 1 642 208 17 59 chr12 59772174 59772368 -84014087 - MER39B-int LTR ERV1 -148 6183 5999 25 0 0 0 chr12 59772347 59772372 -84014083 + AT_rich Low_complexity Low_complexity 1 25 0 * 832 126 209 21 chr12 59772372 59772563 -84013892 - MER4B LTR ERV1 -383 227 1 523 220 86 77 chr12 59772575 59772749 -84013706 - MER39B-int LTR ERV1 -4419 2179 1999 1928 158 16 7 chr12 59772749 59773053 -84013402 - AluJb SINE Alu -5 307 1 523 220 86 77 chr12 59773053 59773215 -84013240 - MER39B-int LTR ERV1 -4599 1999 1840 2172 102 0 62 chr12 59773333 59773657 -84012798 - AluSx SINE Alu -8 304 1 673 177 61 78 chr12 59773657 59773979 -84012476 - MER39B-int LTR ERV1 -4565 1766 1040 733 126 8 71 chr12 59773998 59774125 -84012330 - AluJb SINE Alu -186 126 8 298 89 22 0 chr12 59774134 59774179 -84012276 - MER39B-int LTR ERV1 -2753 2127 2082 1135 179 155 36 chr12 59774249 59774585 -84011870 - MER39B-int LTR ERV1 -5096 1235 860 886 164 85 108 chr12 59774626 59774944 -84011511 - MER39B-int LTR ERV1 -4472 1474 362 1381 221 12 36 chr12 59775002 59775333 -84011122 - MER39B-int LTR ERV1 -6008 323 1 2192 121 49 0 chr12 59775340 59775687 -84010768 - MER39B LTR ERV1 -25 628 265 2317 98 10 0 chr12 59775687 59775993 -84010462 - AluSg SINE Alu -1 309 1 198 0 0 0 chr12 59775993 59776015 -84010440 + (T)n Simple_repeat Simple_repeat 1 22 0 1068 231 40 102 chr12 59776028 59776340 -84010115 - MER57-int LTR ERV1 -4002 2329 1999 2387 96 0 3 chr12 59776340 59776642 -84009813 - AluSx SINE Alu -10 302 2 1068 231 40 102 chr12 59776642 59777027 -84009428 - MER57-int LTR ERV1 -4332 1999 782 473 106 0 0 chr12 59777032 59777098 -84009357 - AluSc SINE Alu -16 293 228 1594 65 0 0 chr12 59777098 59777282 -84009173 - AluSc SINE Alu -125 184 1 1086 109 284 0 chr12 59777282 59777493 -84008962 - MER39B LTR ERV1 -382 271 1 502 252 155 13 chr12 59780288 59780443 -84006012 - MER5A DNA MER1_type -8 181 5 791 205 155 15 chr12 59782432 59782632 -84003823 + MIR SINE MIR 7 234 -28 201 39 0 0 chr12 59783942 59783968 -84002487 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2457 74 6 6 chr12 59784554 59784895 -84001560 + AluSq SINE Alu 1 341 0 461 269 35 65 chr12 59787234 59787435 -83999020 - L2 LINE L2 -1 3312 3118 70 78 0 0 chr12 59787592 59787746 -83998709 + GC_rich Low_complexity Low_complexity 1 154 0 27 73 0 0 chr12 59787757 59787812 -83998643 + GC_rich Low_complexity Low_complexity 1 55 0 32 26 0 0 chr12 59787975 59788014 -83998441 + GC_rich Low_complexity Low_complexity 1 39 0 396 222 242 0 chr12 59794384 59794483 -83991972 - MER45A DNA AcHobo 0 178 56 191 36 36 0 chr12 59799492 59799520 -83986935 + (CA)n Simple_repeat Simple_repeat 2 30 0 398 323 94 15 chr12 59799868 59800069 -83986386 + MIR SINE MIR 35 251 -11 985 142 77 0 chr12 59800306 59800461 -83985994 + AluSg/x SINE Alu 137 303 -9 1769 168 68 25 chr12 59800907 59801266 -83985189 - L1MB5 LINE L1 -4 6170 5791 189 0 0 0 chr12 59801266 59801287 -83985168 + (TA)n Simple_repeat Simple_repeat 1 21 0 1769 168 68 25 chr12 59801287 59801321 -83985134 - L1MB5 LINE L1 -383 5791 5760 684 148 35 56 chr12 59801353 59801495 -83984960 - L1MB3 LINE L1 -1 6182 6044 1606 164 52 33 chr12 59801564 59801869 -83984586 + AluJo SINE Alu 1 311 -1 2163 139 7 0 chr12 59801871 59802181 -83984274 + AluSx SINE Alu 1 312 0 400 289 29 0 chr12 59803368 59803472 -83982983 + MIR SINE MIR 23 129 -133 432 209 0 9 chr12 59803475 59803590 -83982865 - L1MA4A LINE L1 0 6303 6190 4384 153 11 66 chr12 59803594 59804756 -83981699 - L1PB4 LINE L1 -101 6055 4944 216 282 56 0 chr12 59804757 59804828 -83981627 + MIR SINE MIR 131 205 -57 746 243 85 6 chr12 59805057 59805234 -83981221 - MIR SINE MIR 0 262 72 214 272 22 33 chr12 59806043 59806135 -83980320 - MIR3 SINE MIR 0 208 118 2193 134 96 18 chr12 59807496 59807891 -83978564 - MSTB LTR MaLR 0 426 1 224 114 68 0 chr12 59809094 59809138 -83977317 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 225 326 62 7 chr12 59809240 59809384 -83977071 - L1MB3 LINE L1 -262 5859 5708 197 265 20 0 chr12 59812479 59812528 -83973927 - MIR3 SINE MIR -50 158 109 1789 202 3 0 chr12 59813734 59814036 -83972419 + AluSx SINE Alu 1 303 -9 12101 184 30 7 chr12 59814060 59816359 -83970096 + L1M1 LINE L1 9 2360 -5205 6104 70 1 20 chr12 59816365 59816765 -83969690 - L1PA8 LINE L1 -1 6171 5765 2541 90 0 0 chr12 59816765 59817076 -83969379 - AluY SINE Alu 0 311 1 6104 70 1 20 chr12 59817076 59817531 -83968924 - L1PA8 LINE L1 -407 5765 5332 * 7829 152 25 10 chr12 59817527 59819497 -83966958 + L1M1 LINE L1 2347 4341 -3224 7257 45 23 2 chr12 59819497 59820185 -83966270 - L1PA5 LINE L1 -1 6153 5451 2529 75 0 0 chr12 59820185 59820490 -83965965 - AluY SINE Alu -6 305 1 7257 45 23 2 chr12 59820490 59821034 -83965421 - L1PA5 LINE L1 -703 5451 4920 1001 58 0 7 chr12 59821034 59821171 -83965284 - L1P3 LINE L1 -377 5795 5660 27650 66 6 3 chr12 59821364 59825809 -83960646 - L1P3 LINE L1 -756 5390 921 1922 190 35 78 chr12 59825809 59826435 -83960020 + LTR5 LTR ERVK 371 969 0 12581 55 5 1 chr12 59826435 59827958 -83958497 + HERV17 LTR ERV1 1767 3294 -5332 8824 68 1 0 chr12 59827959 59829038 -83957417 - L1P LINE L1 -5065 1081 2 3804 64 4 2 chr12 59829038 59829537 -83956918 - L1P LINE L1 -1099 5047 4548 333 213 56 65 chr12 59829655 59829744 -83956711 - L1M4 LINE L1 -2967 3179 3090 1726 25 0 0 chr12 59829744 59829946 -83956509 - SVA Other Other -3 1383 1182 333 213 56 65 chr12 59829946 59829964 -83956491 - L1M4 LINE L1 -3056 3090 3073 6558 18 0 0 chr12 59829976 59830709 -83955746 - L1HS LINE L1 0 6155 5423 7624 25 7 227 chr12 59830709 59832217 -83954238 - SVA Other Other -210 1176 1 32378 96 8 11 chr12 59832218 59836781 -83949674 - L1P LINE L1 -1588 4558 7 213 271 14 0 chr12 59837145 59837215 -83949240 + (TG)n Simple_repeat Simple_repeat 1 71 0 28 0 0 0 chr12 59838687 59838715 -83947740 + AT_rich Low_complexity Low_complexity 1 28 0 235 170 19 19 chr12 59839372 59839425 -83947030 + CT-rich Low_complexity Low_complexity 2 54 0 1725 172 3 7 chr12 59844828 59845136 -83941319 + AluSx SINE Alu 6 312 0 19883 166 22 36 chr12 59845157 59851280 -83935175 + L1M1 LINE L1 12 6053 -1512 8161 85 27 0 chr12 59851288 59852349 -83934106 - THE1-int LTR MaLR -450 1130 41 224 114 68 0 chr12 59854333 59854377 -83932078 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 233 326 62 7 chr12 59854479 59854623 -83931832 - L1ME LINE L1 -262 5859 5708 195 265 20 0 chr12 59857718 59857767 -83928688 - MIR3 SINE MIR -50 158 109 1636 202 3 0 chr12 59858973 59859275 -83927180 + AluSx SINE Alu 1 303 -9 12941 181 30 8 chr12 59859301 59861598 -83924857 + L1M1 LINE L1 13 2360 -5205 6424 70 1 20 chr12 59861604 59862004 -83924451 - L1PA8 LINE L1 -1 6171 5765 2352 93 0 0 chr12 59862004 59862315 -83924140 - AluY SINE Alu 0 311 1 6424 70 1 20 chr12 59862315 59862770 -83923685 - L1PA8 LINE L1 -407 5765 5332 * 8190 153 25 11 chr12 59862766 59864744 -83921711 + L1M1 LINE L1 2347 4350 -3215 * 34626 60 3 5 chr12 59864738 59865427 -83921028 - L1PA5 LINE L1 -1 6153 5464 2383 75 0 0 chr12 59865427 59865732 -83920723 - AluY SINE Alu -6 305 1 34626 60 3 5 chr12 59865732 59870284 -83916171 - L1PA5 LINE L1 -690 5464 921 1922 190 35 78 chr12 59870284 59870910 -83915545 + LTR5 LTR ERVK 371 969 0 12594 54 5 1 chr12 59870910 59872433 -83914022 + HERV17 LTR ERV1 1767 3294 -5332 3087 48 0 0 chr12 59872434 59872805 -83913650 - L1P LINE L1 -5065 1081 711 398 290 57 16 chr12 59873396 59873520 -83912935 + L2 LINE L2 3142 3270 -2 653 235 0 15 chr12 59873594 59873730 -83912725 - MLT1A1 LTR MaLR 0 365 232 2382 163 0 64 chr12 59873732 59874296 -83912159 - MER4B LTR ERV1 0 610 83 464 128 17 17 chr12 59875007 59875124 -83911331 + (CA)n Simple_repeat Simple_repeat 2 118 0 218 228 201 54 chr12 59875474 59875623 -83910832 + MIR SINE MIR 1 171 -91 245 296 14 113 chr12 59975801 59975943 -83810512 + L2 LINE L2 3137 3264 -8 21 36 0 0 chr12 59976293 59976321 -83810134 + AT_rich Low_complexity Low_complexity 1 28 0 224 0 65 0 chr12 59976389 59976420 -83810035 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 5988 88 15 8 chr12 59976420 59977315 -83809140 - L1PA8A LINE L1 -21 6110 5210 344 250 0 22 chr12 59977447 59977539 -83808916 + L1MC4 LINE L1 6614 6703 -1339 276 227 0 0 chr12 59977542 59977630 -83808825 + (TA)n Simple_repeat Simple_repeat 1 88 0 330 264 23 0 chr12 59977632 59977719 -83808736 + L1MC4 LINE L1 6613 6701 -1341 185 180 20 0 chr12 59977721 59977771 -83808684 + (TA)n Simple_repeat Simple_repeat 1 51 0 797 121 23 15 chr12 59977812 59977944 -83808511 - HERVL LTR ERVL -3441 2213 2081 * 14508 65 8 1 chr12 59977937 59979771 -83806684 + HERVL-A1 LTR ERVL 3026 4872 -782 5806 85 0 0 chr12 59979871 59980635 -83805820 + HERVL-A1 LTR ERVL 4891 5654 0 3264 92 0 11 chr12 59980635 59981082 -83805373 + MLT2A1 LTR ERVL 1 442 -2 218 171 0 0 chr12 59981288 59981323 -83805132 + (ATG)n Simple_repeat Simple_repeat 1 35 0 280 340 201 0 chr12 59981513 59981781 -83804674 - L2 LINE L2 -993 2321 2000 30 77 0 0 chr12 59982379 59982444 -83804011 + AT_rich Low_complexity Low_complexity 1 65 0 696 299 61 22 chr12 59982861 59983753 -83802702 - L1ME3 LINE L1 -237 5994 5069 274 239 14 28 chr12 59983760 59983831 -83802624 - L1 LINE L1 -1172 5043 4974 23 0 0 0 chr12 59983971 59983994 -83802461 + AT_rich Low_complexity Low_complexity 1 23 0 341 298 101 0 chr12 59984092 59984270 -83802185 - L1ME3 LINE L1 -4689 1707 1512 1946 151 0 0 chr12 59984704 59984995 -83801460 - AluSx SINE Alu -21 291 1 2278 220 23 88 chr12 59985569 59986277 -83800178 - L1ME1 LINE L1 -9 6157 5496 1617 237 58 23 chr12 59986271 59986879 -83799576 + L1M4 LINE L1 4553 5181 -965 * 257 191 176 52 chr12 59986954 59987090 -83799365 + L1ME2 LINE L1 6011 6163 -1 537 86 0 0 chr12 59987092 59987173 -83799282 + L1PA7 LINE L1 6071 6151 -3 349 289 36 0 chr12 59988848 59988949 -83797506 - MER5A DNA MER1_type -45 141 29 2107 54 0 0 chr12 59989246 59989506 -83796949 + L1PA7 LINE L1 5892 6151 -3 2067 113 0 4 chr12 59990357 59990631 -83795824 - AluSx SINE Alu -39 273 1 23 68 0 0 chr12 59990837 59990881 -83795574 + AT_rich Low_complexity Low_complexity 1 44 0 236 323 136 45 chr12 59991538 59991693 -83794762 - MIR SINE MIR -65 197 29 2411 91 0 0 chr12 59992170 59992477 -83793978 + AluY SINE Alu 1 307 -4 2464 117 11 13 chr12 59992504 59992880 -83793575 + THE1C LTR MaLR 1 375 0 183 205 0 0 chr12 59993019 59993058 -83793397 + (TA)n Simple_repeat Simple_repeat 1 39 0 254 345 59 17 chr12 59993905 59994024 -83792431 + MIR SINE MIR 21 144 -64 1252 214 31 21 chr12 59994084 59994373 -83792082 + AluJo SINE Alu 5 296 -16 579 347 121 60 chr12 59995026 59996260 -83790195 + L2 LINE L2 102 1410 -1904 287 275 22 33 chr12 59996272 59996363 -83790092 - MER21B LTR ERV1 -454 409 320 22 35 0 0 chr12 59996456 59996485 -83789970 + AT_rich Low_complexity Low_complexity 1 29 0 193 376 38 38 chr12 59996494 59996680 -83789775 - L2 LINE L2 -1732 1582 1397 321 131 0 0 chr12 59996684 59996745 -83789710 + (TA)n Simple_repeat Simple_repeat 1 61 0 26 30 0 0 chr12 59997012 59997045 -83789410 + AT_rich Low_complexity Low_complexity 1 33 0 322 410 50 50 chr12 59997124 59997463 -83788992 + L2 LINE L2 2930 3268 -4 192 77 0 0 chr12 59997851 59997877 -83788578 + (A)n Simple_repeat Simple_repeat 1 26 0 386 211 39 39 chr12 59998765 59998893 -83787562 - MER103 DNA DNA -2 164 37 400 340 51 21 chr12 60000610 60000845 -83785610 - MLT1L LTR MaLR -246 369 128 571 110 12 0 chr12 60001336 60001418 -83785037 + U6 snRNA snRNA 2 84 -23 22 0 0 0 chr12 60001476 60001498 -83784957 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 60001731 60001770 -83784685 + (CA)n Simple_repeat Simple_repeat 1 39 0 316 217 43 54 chr12 60001863 60001955 -83784500 + MER103 DNA DNA 11 101 -65 414 287 51 51 chr12 60001963 60002120 -83784335 - MIR SINE MIR -3 259 103 2179 151 2 32 chr12 60003878 60004281 -83782174 - L1MC1 LINE L1 -82 6251 5861 248 339 99 51 chr12 60004394 60004769 -83781686 - L2 LINE L2 -9 3304 2912 1789 170 3 3 chr12 60004896 60005205 -83781250 + AluJb SINE Alu 1 309 0 522 0 0 0 chr12 60005441 60005499 -83780956 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 406 335 74 13 chr12 60005666 60005896 -83780559 - L2 LINE L2 -756 2558 2315 202 62 62 0 chr12 60005897 60005929 -83780526 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1794 159 29 0 chr12 60006014 60006291 -83780164 + AluSx SINE Alu 10 294 -18 202 29 57 0 chr12 60006294 60006329 -83780126 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 202 245 20 0 chr12 60006353 60006402 -83780053 - L2 LINE L2 -1082 2232 2183 248 237 17 0 chr12 60006402 60006461 -83779994 - L2 LINE L2 -1102 2212 2153 1527 207 49 23 chr12 60006580 60006966 -83779489 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr12 60007628 60007650 -83778805 + AT_rich Low_complexity Low_complexity 1 22 0 2537 53 0 0 chr12 60008202 60008504 -83777951 + AluY SINE Alu 1 302 -9 221 75 75 0 chr12 60009527 60009580 -83776875 + (TA)n Simple_repeat Simple_repeat 2 58 0 188 232 101 43 chr12 60009594 60009663 -83776792 - L3 LINE CR1 -54 1523 1451 1862 119 26 15 chr12 60009664 60009971 -83776484 - AluSx SINE Alu 0 321 12 637 313 38 58 chr12 60010195 60010508 -83775947 - L3 LINE CR1 -438 1139 833 448 229 20 52 chr12 60010516 60010669 -83775786 - LTR67 LTR ERVL -7 550 403 239 303 13 0 chr12 60010781 60010857 -83775598 - LTR67 LTR ERVL -479 78 2 2521 139 53 83 chr12 60010905 60011436 -83775019 + MLT2B2 LTR ERVL 1 515 0 283 314 138 19 chr12 60011756 60011915 -83774540 - MER5A DNA MER1_type -11 178 1 429 224 158 0 chr12 60012181 60012333 -83774122 - L1MC4a LINE L1 -1789 6019 5844 21 36 0 0 chr12 60012360 60012388 -83774067 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 60012629 60012653 -83773802 + AT_rich Low_complexity Low_complexity 1 24 0 1900 71 0 4 chr12 60012701 60012939 -83773516 - AluY SINE Alu -9 302 66 398 232 21 0 chr12 60012966 60013061 -83773394 - MLT1A1 LTR MaLR 0 365 269 * 1299 239 28 30 chr12 60013045 60013409 -83773046 + MLT1D LTR MaLR 115 477 -28 2565 150 114 18 chr12 60013759 60015158 -83771297 - SATR1 Satellite Satellite -10 1533 1 2436 180 94 33 chr12 60015188 60017650 -83768805 - SATR1 Satellite Satellite -2 2610 1 1053 213 290 18 chr12 60017674 60018068 -83768387 - SATR1 Satellite Satellite -1 501 1 11005 123 39 46 chr12 60018068 60020227 -83766228 + L1P3 LINE L1 6 2206 -4255 2328 177 112 14 chr12 60020229 60021840 -83764615 - SATR1 Satellite Satellite -2 1769 1 2413 164 106 11 chr12 60021874 60027539 -83758916 - SATR1 Satellite Satellite 0 6206 1 21 36 0 0 chr12 60028551 60028579 -83757876 + AT_rich Low_complexity Low_complexity 1 28 0 2059 170 120 40 chr12 60028667 60029143 -83757312 + MLT2B2 LTR ERVL 1 514 -1 245 211 19 0 chr12 60029393 60029445 -83757010 - MER81 DNA DNA -41 73 21 180 179 0 0 chr12 60029488 60029527 -83756928 + T-rich Low_complexity Low_complexity 2 40 0 308 182 7 0 chr12 60029537 60029740 -83756715 - AluJo SINE Alu -134 168 1 557 223 103 71 chr12 60029822 60030046 -83756409 - MIR SINE MIR -2 260 30 25 0 0 0 chr12 60030114 60030139 -83756316 + AT_rich Low_complexity Low_complexity 1 25 0 308 302 95 27 chr12 60030903 60031125 -83755330 - L1M4 LINE L1 -1875 4271 4035 319 300 53 49 chr12 60031144 60031506 -83754949 - L1M4 LINE L1 -2180 3966 3609 400 226 314 0 chr12 60031536 60031673 -83754782 + MER5A DNA MER1_type 10 189 0 34 24 0 0 chr12 60032556 60032597 -83753858 + AT_rich Low_complexity Low_complexity 1 41 0 458 304 109 42 chr12 60033235 60033778 -83752677 - HAL1b LINE L1 -497 851 273 422 251 81 38 chr12 60034809 60035020 -83751435 + LTR37A LTR ERV1 249 426 0 428 281 7 15 chr12 60035358 60035493 -83750962 - L1ME3A LINE L1 -259 5911 5778 252 217 193 12 chr12 60035592 60035675 -83750780 - L1ME3A LINE L1 -525 5639 5542 1976 176 56 2 chr12 60035829 60036254 -83750201 - MER61C LTR ERV1 0 434 1 332 312 58 38 chr12 60036561 60036904 -83749551 - L1ME3A LINE L1 -1000 5146 4797 1080 314 102 37 chr12 60037021 60037736 -83748719 - L2 LINE L2 -4 3309 2502 1060 207 121 25 chr12 60037736 60038050 -83748405 - MER2 DNA MER2_type 0 344 1 1080 314 102 37 chr12 60038050 60038378 -83748077 - L2 LINE L2 -811 2502 2196 2482 197 214 39 chr12 60038510 60044088 -83742367 - SATR1 Satellite Satellite 0 6553 1 968 246 216 43 chr12 60044129 60044840 -83741615 - SATR1 Satellite Satellite -46 833 1 733 235 292 0 chr12 60044867 60045161 -83741294 + SATR1 Satellite Satellite 1 379 -190 2405 174 102 39 chr12 60045185 60050097 -83736358 - SATR1 Satellite Satellite -2 5221 1 1310 215 239 20 chr12 60050110 60051086 -83735369 - SATR1 Satellite Satellite -3 1189 1 357 349 123 15 chr12 60051451 60051720 -83734735 + L2 LINE L2 2672 2969 -345 2389 54 0 51 chr12 60052386 60052700 -83733755 + AluY SINE Alu 1 298 -13 1682 161 31 14 chr12 60053882 60054174 -83732281 + AluJo SINE Alu 1 297 -15 217 153 17 17 chr12 60055852 60055911 -83730544 + (TA)n Simple_repeat Simple_repeat 1 59 0 333 343 0 0 chr12 60055963 60056062 -83730393 + MIR SINE MIR 59 157 -105 33 0 0 0 chr12 60058404 60058437 -83728018 + AT_rich Low_complexity Low_complexity 1 33 0 2848 85 46 5 chr12 60058799 60059187 -83727268 + MLT2A1 LTR ERVL 1 404 -40 295 119 0 68 chr12 60059222 60059281 -83727174 + MLT2A1 LTR ERVL 390 444 0 8691 72 14 3 chr12 60059281 60060402 -83726053 + HERVL-A1 LTR ERVL 1 1134 -4520 252 86 49 25 chr12 60060402 60060483 -83725972 + (TA)n Simple_repeat Simple_repeat 1 83 0 407 78 0 24 chr12 60060488 60060567 -83725888 + MLT2A1 LTR ERVL 391 444 0 1590 242 72 27 chr12 60060589 60061142 -83725313 - L1ME1 LINE L1 -5 6230 5653 1605 246 117 23 chr12 60061143 60062213 -83724242 - L1ME1 LINE L1 -3380 2835 1692 1233 71 0 0 chr12 60062251 60062406 -83724049 + L1PA8 LINE L1 5991 6145 -27 197 62 0 31 chr12 60062409 60062441 -83724014 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1909 271 77 55 chr12 60063046 60063303 -83723152 - L1ME1 LINE L1 -5451 945 695 1344 207 3 46 chr12 60063303 60063627 -83722828 - AluJb SINE Alu -2 310 1 1909 271 77 55 chr12 60063627 60064268 -83722187 - L1ME1 LINE L1 -5701 695 27 524 280 121 71 chr12 60064732 60065128 -83721327 - LTR16C LTR ERVL -5 486 71 2288 184 41 6 chr12 60065988 60066500 -83719955 - L1MA9 LINE L1 -2 6310 5781 5124 118 33 0 chr12 60066552 60067338 -83719117 - L1PA15 LINE L1 -21 6144 5333 7045 132 13 4 chr12 60067411 60069618 -83716837 - L1MA3 LINE L1 0 6305 4361 1556 188 60 17 chr12 60069608 60069960 -83716495 - L1MA9 LINE L1 -573 5739 5373 * 1214 238 27 3 chr12 60070111 60070405 -83716050 - AluJo SINE Alu -11 301 1 979 201 39 0 chr12 60070506 60070710 -83715745 - Tigger1 DNA MER2_type -4 2414 2203 731 188 38 19 chr12 60070692 60070852 -83715603 - Tigger1 DNA MER2_type -2255 163 1 * 251 273 187 29 chr12 60071246 60071385 -83715070 + L2 LINE L2 3153 3313 0 1384 217 40 4 chr12 60071479 60071596 -83714859 + AluJo SINE Alu 1 112 -200 567 29 0 0 chr12 60071596 60071665 -83714790 + (CA)n Simple_repeat Simple_repeat 2 70 0 1384 217 40 4 chr12 60071665 60071824 -83714631 + AluJo SINE Alu 112 287 -25 2128 104 0 47 chr12 60072001 60072319 -83714136 + AluSq SINE Alu 1 303 -10 1341 265 118 48 chr12 60072322 60073065 -83713390 - L1ME3 LINE L1 -1 6161 5367 2082 208 15 15 chr12 60073079 60073540 -83712915 - MER65C LTR ERV1 0 461 1 1059 42 42 6 chr12 60073911 60074076 -83712379 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 22 35 0 0 chr12 60074148 60074177 -83712278 + AT_rich Low_complexity Low_complexity 1 29 0 481 260 87 83 chr12 60074828 60075082 -83711373 + MIR SINE MIR 7 261 -1 216 67 0 0 chr12 60075072 60075102 -83711353 + (TTA)n Simple_repeat Simple_repeat 1 30 0 421 271 60 20 chr12 60077120 60077271 -83709184 + MER5A DNA MER1_type 4 160 -29 588 299 44 25 chr12 60077448 60077652 -83708803 - MIR SINE MIR -40 222 15 208 188 21 0 chr12 60077827 60077875 -83708580 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 608 337 124 47 chr12 60077906 60078681 -83707774 - L2 LINE L2 -76 3196 2365 1988 172 21 16 chr12 60078874 60079401 -83707054 - LTR8A LTR ERV1 0 727 159 3070 28 0 0 chr12 60079434 60079795 -83706660 - L1PA5 LINE L1 -1 6153 5793 6478 53 4 1 chr12 60079795 60080637 -83705818 + L1P2 LINE L1 2881 3724 -2422 3138 47 0 0 chr12 60080637 60081018 -83705437 + L1P2 LINE L1 5399 5779 -375 788 180 75 0 chr12 60081018 60081179 -83705276 - LTR8A LTR ERV1 -554 173 1 204 264 42 0 chr12 60081179 60081251 -83705204 - L2 LINE L2 -1285 2029 1955 31 0 0 0 chr12 60081632 60081663 -83704792 + AT_rich Low_complexity Low_complexity 1 31 0 398 271 146 0 chr12 60081664 60081808 -83704647 - MIR SINE MIR -67 195 31 388 308 55 25 chr12 60081826 60082063 -83704392 - L2 LINE L2 -1885 1429 1186 762 289 81 79 chr12 60083613 60084108 -83702347 - L2 LINE L2 0 3313 2818 319 293 207 11 chr12 60084378 60084552 -83701903 + MIR SINE MIR 34 241 -21 301 287 55 37 chr12 60086444 60086608 -83699847 + MLT1L LTR MaLR 150 316 -299 514 243 30 59 chr12 60086769 60086938 -83699517 + L2 LINE L2 3146 3309 -4 226 146 49 0 chr12 60087172 60087213 -83699242 - MLT1D LTR MaLR 0 626 584 1233 177 121 87 chr12 60087224 60087614 -83698841 - MLT1D LTR MaLR -102 403 1 2220 103 10 3 chr12 60088176 60088476 -83697979 - AluSp SINE Alu -11 302 1 2182 115 3 0 chr12 60089349 60089644 -83696811 - AluSc SINE Alu -13 296 1 1941 142 3 3 chr12 60090828 60091133 -83695322 + AluSx SINE Alu 1 305 0 288 242 70 39 chr12 60091494 60091622 -83694833 + L1ME LINE L1 5509 5640 -481 482 314 6 41 chr12 60091703 60091875 -83694580 - L2 LINE L2 -225 3088 2923 244 148 56 19 chr12 60091920 60091974 -83694481 - MLT2B1 LTR ERVL 0 520 465 219 139 0 0 chr12 60091974 60092010 -83694445 + (TG)n Simple_repeat Simple_repeat 2 37 0 1996 138 19 49 chr12 60092011 60092381 -83694074 - THE1B LTR MaLR 0 364 6 210 71 0 0 chr12 60092381 60092409 -83694046 + (CA)n Simple_repeat Simple_repeat 1 28 0 350 267 0 11 chr12 60092410 60092500 -83693955 - L1MC4 LINE L1 -1339 6703 6615 261 139 0 0 chr12 60092505 60092548 -83693907 + (TA)n Simple_repeat Simple_repeat 1 43 0 195 129 0 0 chr12 60092547 60092578 -83693877 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2331 164 95 19 chr12 60092581 60093036 -83693419 - MLT2B1 LTR ERVL -21 533 2 242 275 29 0 chr12 60093037 60093106 -83693349 + L2 LINE L2 2318 2388 -926 265 268 41 0 chr12 60093114 60093211 -83693244 + L1MC4a LINE L1 5009 5109 -1037 334 235 67 34 chr12 60093299 60093418 -83693037 + L1MC4a LINE L1 5254 5376 -2432 353 235 17 8 chr12 60093427 60093546 -83692909 + L1MC4a LINE L1 5707 5826 -1982 1141 209 114 51 chr12 60093684 60094000 -83692455 + MER2 DNA MER2_type 4 339 -6 366 309 152 40 chr12 60094010 60094489 -83691966 + L1MC4a LINE L1 6083 6615 -1193 2379 258 90 50 chr12 60094528 60095675 -83690780 + L1MC4 LINE L1 6660 7852 -190 1054 229 53 8 chr12 60095723 60095968 -83690487 + MLT2D LTR ERVL 7 262 -152 489 229 93 54 chr12 60096015 60096273 -83690182 + HAL1 LINE L1 2128 2395 -112 2496 154 45 4 chr12 60096423 60096916 -83689539 - L1MA6 LINE L1 -5 6295 5783 422 302 64 45 chr12 60097293 60097495 -83688960 + MLT1J LTR MaLR 1 206 -305 5841 37 63 0 chr12 60097524 60098257 -83688198 - L1PA4 LINE L1 -1817 4329 3551 8734 33 3 1 chr12 60098257 60100082 -83686373 + L1PA4 LINE L1 4326 6154 -1 24 32 0 0 chr12 60100332 60100363 -83686092 + AT_rich Low_complexity Low_complexity 1 31 0 3390 192 55 49 chr12 60100960 60102073 -83684382 - L1MB7 LINE L1 -1 6681 5559 3336 71 5 5 chr12 60102071 60102509 -83683946 - L1PA8 LINE L1 -298 5874 5437 * 5572 98 18 49 chr12 60102537 60103390 -83683065 - LTR12 LTR ERV1 0 826 1 4293 112 5 0 chr12 60103390 60103998 -83682457 - HERV9 LTR ERV1 0 8399 7789 383 161 0 0 chr12 60103994 60104056 -83682399 - HERV9 LTR ERV1 -835 7564 7503 * 650 138 23 73 chr12 60104054 60104272 -83682183 - HERV17 LTR ERV1 -7726 900 694 * 1409 117 0 18 chr12 60104254 60104477 -83681978 - HERV17 LTR ERV1 -3425 4974 4756 * 12705 107 46 9 chr12 60104476 60107261 -83679194 - HERV17 LTR ERV1 -5427 2972 1 3602 86 226 0 chr12 60107261 60107822 -83678633 - LTR12 LTR ERV1 0 688 1 1840 88 0 0 chr12 60107823 60108074 -83678381 + L1PA8 LINE L1 5915 6165 -7 729 240 41 0 chr12 60108074 60108270 -83678185 - L1MB7 LINE L1 -1076 5568 5365 951 226 51 102 chr12 60108270 60108642 -83677813 + MLT1A1 LTR MaLR 1 353 -12 2090 241 101 32 chr12 60108647 60109532 -83676923 - L1MB7 LINE L1 -1276 5368 4423 370 188 0 0 chr12 60109552 60109621 -83676834 - MADE1 DNA Mariner 0 80 12 564 264 27 0 chr12 60109621 60109769 -83676686 - L1MB7 LINE L1 -2485 4159 4008 8834 31 4 0 chr12 60109800 60111630 -83674825 - L1PA2 LINE L1 -1 6154 4321 8592 38 0 0 chr12 60111632 60112668 -83673787 + L1PA2 LINE L1 3256 4291 -1855 231 254 0 0 chr12 60112832 60112903 -83673552 - L1MB7 LINE L1 -3256 3388 3318 * 435 208 125 7 chr12 60112901 60113045 -83673410 - L1MDa LINE L1 -4001 2539 2379 2515 266 64 43 chr12 60113053 60114518 -83671937 - L1MDa LINE L1 -4942 1598 17 263 314 22 7 chr12 60114530 60114667 -83671788 - L1MB7 LINE L1 -4163 2483 2345 4786 257 57 39 chr12 60114692 60116683 -83669772 - L1MB7 LINE L1 -4597 2049 15 378 244 84 8 chr12 60117111 60117230 -83669225 - MIR3 SINE MIR -44 164 37 247 323 26 71 chr12 60119017 60119172 -83667283 - MIR SINE MIR -112 150 3 2122 125 7 0 chr12 60119764 60120069 -83666386 - AluSx SINE Alu -4 308 2 186 71 0 0 chr12 60120262 60120290 -83666165 + (T)n Simple_repeat Simple_repeat 1 28 0 228 67 0 0 chr12 60121330 60121360 -83665095 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 314 305 30 74 chr12 60121372 60121575 -83664880 - L2 LINE L2 0 3313 3120 183 295 132 31 chr12 60121581 60121710 -83664745 + MIR SINE MIR 72 213 -49 245 205 62 116 chr12 60121800 60121912 -83664543 - L2 LINE L2 -12 3301 3196 26 0 0 0 chr12 60122345 60122371 -83664084 + AT_rich Low_complexity Low_complexity 1 26 0 1454 138 37 107 chr12 60122377 60122703 -83663752 + AluSx SINE Alu 3 305 -7 876 238 68 17 chr12 60122829 60123064 -83663391 + MIR SINE MIR 15 261 -1 264 250 15 0 chr12 60123324 60123392 -83663063 + MIR SINE MIR 96 164 -98 21 36 0 0 chr12 60123732 60123760 -83662695 + AT_rich Low_complexity Low_complexity 1 28 0 5281 93 57 7 chr12 60123760 60124533 -83661922 - L1PB1 LINE L1 -1 6150 5356 268 270 0 0 chr12 60124617 60124680 -83661775 - MIR SINE MIR 0 262 200 195 227 0 0 chr12 60124761 60124805 -83661650 - L2 LINE L2 0 3313 3270 22 0 0 0 chr12 60125316 60125338 -83661117 + AT_rich Low_complexity Low_complexity 1 22 0 192 241 35 35 chr12 60126148 60126206 -83660249 + L2 LINE L2 3256 3313 0 273 296 68 30 chr12 60127662 60127794 -83658661 - MIR SINE MIR -31 231 95 * 383 341 14 55 chr12 60127787 60128004 -83658451 + L2 LINE L2 717 924 -2390 302 239 56 0 chr12 60128011 60128082 -83658373 + U6 snRNA snRNA 31 105 -2 802 271 53 89 chr12 60128086 60128410 -83658045 + L1ME3A LINE L1 4520 4854 -1308 294 188 0 0 chr12 60128410 60128458 -83657997 + FRAM/FAM SINE Alu 22 69 -106 802 271 53 89 chr12 60128458 60128596 -83657859 + L1ME3A LINE L1 4854 4995 -1167 207 69 0 0 chr12 60128596 60128625 -83657830 + (CA)n Simple_repeat Simple_repeat 2 30 0 802 271 53 89 chr12 60128625 60129338 -83657117 + L1ME3A LINE L1 4995 5745 -417 1507 194 30 10 chr12 60129374 60129678 -83656777 - AluJo SINE Alu -2 310 1 442 156 33 0 chr12 60129681 60129771 -83656684 + L1ME3A LINE L1 5862 5954 -216 788 320 55 43 chr12 60130260 60130773 -83655682 - LTR33 LTR ERVL 0 521 3 22076 165 20 7 chr12 60131754 60134599 -83651856 + L1MA3 LINE L1 13 2965 -4600 536 0 16 0 chr12 60134599 60134663 -83651792 + (TATAG)n Simple_repeat Simple_repeat 1 65 0 22076 165 20 7 chr12 60134663 60137040 -83649415 + L1MA3 LINE L1 2965 5308 -2257 2485 57 9 0 chr12 60137040 60137355 -83649100 + L1PA8A LINE L1 5533 5850 -281 749 132 0 8 chr12 60137461 60137582 -83648873 + L1PA8 LINE L1 6053 6172 0 * 1375 180 19 12 chr12 60137569 60137864 -83648591 + L1MA3 LINE L1 5294 5598 -1967 3622 129 115 29 chr12 60137864 60138944 -83647511 - MER11A LTR ERVK 0 1236 1 6264 145 19 22 chr12 60138944 60140228 -83646227 + L1MA3 LINE L1 5593 6863 -861 1809 157 0 3 chr12 60140228 60140553 -83645902 + AluSx SINE Alu 1 324 0 6264 145 19 22 chr12 60140553 60141413 -83645042 + L1MA3 LINE L1 6863 7724 0 742 82 0 33 chr12 60141525 60141647 -83644808 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 1067 97 0 27 chr12 60141651 60141836 -83644619 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1260 184 0 59 chr12 60141836 60142107 -83644348 - AluJo SINE Alu -39 273 19 373 327 20 0 chr12 60143324 60143425 -83643030 + MIR3 SINE MIR 87 189 -19 2593 193 35 48 chr12 60143890 60144492 -83641963 - L1MB5 LINE L1 -36 6138 5545 2131 112 0 3 chr12 60144503 60144836 -83641619 - AluSx SINE Alu 0 332 1 220 258 16 32 chr12 60144892 60144954 -83641501 - MIR SINE MIR -124 138 78 205 338 15 0 chr12 60149213 60149281 -83637174 + MIR SINE MIR 18 86 -176 325 221 29 77 chr12 60150103 60150207 -83636248 - MIR SINE MIR -66 196 98 1953 141 6 16 chr12 60150210 60150334 -83636121 + AluSq SINE Alu 1 125 -188 293 0 0 26 chr12 60150334 60150372 -83636083 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1953 141 6 16 chr12 60150372 60150560 -83635895 + AluSq SINE Alu 125 310 -3 1036 207 184 29 chr12 60150780 60151123 -83635332 + MSTD LTR MaLR 1 396 0 23 0 0 0 chr12 60151633 60151656 -83634799 + AT_rich Low_complexity Low_complexity 1 23 0 227 247 11 0 chr12 60151941 60152030 -83634425 + GA-rich Low_complexity Low_complexity 2 91 0 387 264 66 0 chr12 60152099 60152205 -83634250 - MIR SINE MIR -80 182 70 226 271 16 62 chr12 60153085 60153214 -83633241 + L2 LINE L2 3100 3222 -91 2033 123 0 3 chr12 60153311 60153647 -83632808 + AluSq SINE Alu 1 335 0 781 275 35 23 chr12 60153660 60153880 -83632575 - MIR SINE MIR -43 219 3 2442 105 17 32 chr12 60154066 60154475 -83631980 + L1MA8 LINE L1 5867 6269 -22 620 336 0 9 chr12 60156527 60156741 -83629714 + MIR SINE MIR 52 262 0 185 362 0 76 chr12 60158253 60158358 -83628097 - L2 LINE L2 -222 3050 2954 1550 145 40 39 chr12 60158466 60158933 -83627522 - MER51A LTR ERV1 0 634 1 857 211 17 16 chr12 60159362 60159573 -83626882 + MER67A LTR ERV1 1 282 -261 1471 273 34 73 chr12 60159733 60161307 -83625148 + L1ME3 LINE L1 4316 5833 -337 363 288 44 64 chr12 60161338 60161588 -83624867 + L1ME3 LINE L1 5911 6155 -7 984 236 9 0 chr12 60163226 60163442 -83623013 - MER20 DNA MER1_type -1 218 1 29 0 0 0 chr12 60164055 60164084 -83622371 + AT_rich Low_complexity Low_complexity 1 29 0 539 281 77 29 chr12 60164877 60165123 -83621332 - MIR SINE MIR -3 259 2 24 0 0 0 chr12 60165885 60165909 -83620546 + AT_rich Low_complexity Low_complexity 1 24 0 399 296 175 21 chr12 60166937 60167253 -83619202 - L2 LINE L2 -254 3059 2699 301 231 45 52 chr12 60167264 60167398 -83619057 + L1MC4a LINE L1 5936 6068 -1740 460 204 91 109 chr12 60167430 60167704 -83618751 + L1MC4a LINE L1 6199 6467 -1341 23 0 0 0 chr12 60167704 60167727 -83618728 + AT_rich Low_complexity Low_complexity 1 23 0 355 372 61 5 chr12 60167939 60168135 -83618320 + MIR SINE MIR 1 207 -55 285 299 20 18 chr12 60169290 60169484 -83616971 + L1P4 LINE L1 5262 5458 -708 521 337 81 32 chr12 60169484 60169730 -83616725 + HERVL40 LTR ERVL 2896 3153 -2377 1569 243 40 5 chr12 60169756 60170131 -83616324 + HERVL40 LTR ERVL 3234 3621 -1909 1456 269 43 5 chr12 60170162 60170553 -83615902 + HERVL40 LTR ERVL 3901 4306 -1224 511 213 88 6 chr12 60170574 60170723 -83615732 + LTR40b LTR ERVL 263 439 -26 352 298 9 2 chr12 60172484 60172599 -83613856 + MIR SINE MIR 57 177 -31 1572 226 35 33 chr12 60172981 60173441 -83613014 + MER65C LTR ERV1 1 461 0 201 147 0 0 chr12 60175418 60175452 -83611003 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1134 271 53 0 chr12 60175741 60176136 -83610319 - L1M4 LINE L1 -2479 3667 3252 202 398 53 35 chr12 60176661 60176832 -83609623 + L2 LINE L2 2807 2980 -333 448 340 51 31 chr12 60178165 60178421 -83608034 - L2 LINE L2 -204 3109 2849 557 322 84 4 chr12 60178538 60178765 -83607690 - L2 LINE L2 -363 2951 2707 1084 220 122 52 chr12 60178846 60179273 -83607182 - MSTB2 LTR MaLR 0 457 1 195 372 21 11 chr12 60179676 60179770 -83606685 - L2 LINE L2 0 3272 3178 450 101 0 0 chr12 60180592 60180661 -83605794 + (CA)n Simple_repeat Simple_repeat 1 69 0 3536 125 15 17 chr12 60180968 60181570 -83604885 - Tigger3b DNA MER2_type -488 743 143 22423 154 8 27 chr12 60181671 60186346 -83600109 - L1P3 LINE L1 -1328 5133 484 1377 227 61 43 chr12 60187437 60187878 -83598577 - LTR2 LTR ERV1 0 449 1 26 82 0 0 chr12 60187909 60187970 -83598485 + AT_rich Low_complexity Low_complexity 1 61 0 1036 122 0 7 chr12 60188267 60188415 -83598040 + AluSq/x SINE Alu 1 147 -165 21 0 0 0 chr12 60239176 60239197 -83547258 + AT_rich Low_complexity Low_complexity 1 21 0 282 73 0 0 chr12 60239332 60239373 -83547082 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 165 58 0 chr12 60239426 60239529 -83546926 + (TA)n Simple_repeat Simple_repeat 1 109 0 186 327 106 29 chr12 60240488 60240592 -83545863 + L2 LINE L2 3094 3205 -67 447 141 0 0 chr12 60241369 60241447 -83545008 + (CA)n Simple_repeat Simple_repeat 2 79 0 500 351 41 8 chr12 60241539 60241784 -83544671 + MIR SINE MIR 8 260 -2 304 279 29 44 chr12 60241850 60241986 -83544469 - L1ME LINE L1 -318 5803 5670 1748 187 41 80 chr12 60242165 60242651 -83543804 + MLT1C LTR MaLR 1 467 0 543 69 0 0 chr12 60242921 60242993 -83543462 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2656 99 16 3 chr12 60243174 60243557 -83542898 + L1PA15 LINE L1 5778 6165 0 952 226 44 40 chr12 60243904 60244130 -83542325 + AluJo SINE Alu 10 236 -76 826 231 5 14 chr12 60244213 60244434 -83542021 + L1M4 LINE L1 4456 4674 -1472 1061 236 69 9 chr12 60244437 60244785 -83541670 - L1M4 LINE L1 -2614 3532 3164 2729 217 40 3 chr12 60244787 60245438 -83541017 - L1 LINE L1 -1893 4253 3579 279 298 53 0 chr12 60246165 60246259 -83540196 - L2 LINE L2 -1 3312 3214 269 212 61 0 chr12 60246942 60247041 -83539414 + A-rich Low_complexity Low_complexity 2 106 0 21 36 0 0 chr12 60247259 60247287 -83539168 + AT_rich Low_complexity Low_complexity 1 28 0 249 308 208 0 chr12 60247528 60247687 -83538768 + MIR SINE MIR 71 262 0 194 111 0 0 chr12 60247844 60247871 -83538584 - L2 LINE L2 -16 3256 3230 446 318 88 0 chr12 60247921 60248113 -83538342 + L2 LINE L2 2331 2539 -775 1452 242 63 29 chr12 60248126 60248506 -83537949 + MLT1C LTR MaLR 6 405 -62 2416 58 0 19 chr12 60248506 60248818 -83537637 - AluY SINE Alu -5 306 1 1452 242 63 29 chr12 60248818 60248884 -83537571 + MLT1C LTR MaLR 405 467 0 375 322 82 79 chr12 60249642 60249771 -83536684 + L2 LINE L2 2667 2794 -519 683 116 0 18 chr12 60249771 60249883 -83536572 - L1PA5 LINE L1 -2 6152 6043 375 322 82 79 chr12 60249883 60250199 -83536256 + L2 LINE L2 2794 3137 -176 1925 155 0 0 chr12 60250199 60250489 -83535966 - AluSx SINE Alu -22 290 1 375 322 82 79 chr12 60250489 60250653 -83535802 + L2 LINE L2 3137 3299 -14 687 201 171 21 chr12 60251555 60251778 -83534677 - L1M2 LINE L1 -527 5657 5432 21 0 0 0 chr12 60251790 60251811 -83534644 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 60252961 60252983 -83533472 + AT_rich Low_complexity Low_complexity 1 22 0 318 286 71 16 chr12 60253171 60253297 -83533158 - MLT1I LTR MaLR -3 406 274 27 0 0 0 chr12 60253676 60253703 -83532752 + AT_rich Low_complexity Low_complexity 1 27 0 321 291 9 114 chr12 60253986 60254206 -83532249 - MIR SINE MIR -13 249 53 1914 140 21 0 chr12 60254962 60255248 -83531207 - AluSx SINE Alu -17 295 4 2106 168 50 10 chr12 60256014 60256431 -83530024 + Tigger2a DNA MER2_type 1 434 0 1549 144 113 0 chr12 60257037 60257294 -83529161 - AluJb SINE Alu -26 286 1 668 253 8 96 chr12 60257993 60258242 -83528213 - LTR16A1 LTR ERVL -216 241 15 306 183 58 25 chr12 60258345 60258465 -83527990 + (TA)n Simple_repeat Simple_repeat 1 124 0 231 298 66 88 chr12 60258534 60258715 -83527740 - L3 LINE CR1 -899 678 502 340 302 79 14 chr12 60258819 60258958 -83527497 - MLT1L LTR MaLR -52 563 416 397 326 35 0 chr12 60259073 60259217 -83527238 - MLT1L LTR MaLR -338 277 129 2322 100 0 0 chr12 60259718 60260019 -83526436 - AluSg SINE Alu -9 301 1 424 208 73 0 chr12 60260349 60260445 -83526010 + Tigger5 DNA MER2_type 2221 2323 0 1106 296 27 61 chr12 60260471 60260982 -83525473 - L1MEc LINE L1 -5866 530 37 6834 146 19 19 chr12 60261462 60262651 -83523804 + HSMAR2 DNA Mariner 3 1191 -111 10990 145 24 52 chr12 60262766 60265594 -83520861 - L1P3 LINE L1 -3605 2856 6 220 365 0 15 chr12 60266750 60266887 -83519568 + A-rich Low_complexity Low_complexity 4 138 0 232 238 36 95 chr12 60266919 60267003 -83519452 - MIR SINE MIR -157 105 27 288 219 0 16 chr12 60267676 60267740 -83518715 + LTR33A LTR ERVL 441 503 -20 1717 176 32 0 chr12 60268391 60268675 -83517780 - AluSg SINE Alu -17 293 1 8173 108 4 8 chr12 60268698 60269979 -83516476 - L1P LINE L1 -2210 3936 2661 341 220 42 42 chr12 60270651 60270769 -83515686 - L1MC5 LINE L1 -30 7931 7814 832 280 109 16 chr12 60270778 60271082 -83515373 - MLT1F LTR MaLR -210 332 1 606 207 156 17 chr12 60271132 60271369 -83515086 - L1MC5 LINE L1 -301 7660 7391 429 208 73 88 chr12 60271383 60271575 -83514880 - L1MC5 LINE L1 -899 7062 6874 768 323 28 0 chr12 60272362 60272613 -83513842 - MIR SINE MIR 0 262 5 1890 239 100 11 chr12 60272719 60273234 -83513221 + MLT1F1 LTR MaLR 1 593 0 956 333 144 35 chr12 60273339 60273527 -83512928 - L2 LINE L2 -95 3218 3052 5196 76 10 6 chr12 60273527 60274211 -83512244 + LTR12 LTR ERV1 1 687 -1 956 333 144 35 chr12 60274211 60274516 -83511939 - L2 LINE L2 -261 3052 2782 2147 122 7 0 chr12 60274516 60274819 -83511636 - AluSq SINE Alu -8 305 1 956 333 144 35 chr12 60274819 60275463 -83510992 - L2 LINE L2 -531 2782 1940 8927 69 18 3 chr12 60275612 60277044 -83509411 + L1P2 LINE L1 4161 5604 -550 27 49 0 0 chr12 60277180 60277221 -83509234 + AT_rich Low_complexity Low_complexity 1 41 0 33 25 0 0 chr12 60277505 60277545 -83508910 + AT_rich Low_complexity Low_complexity 1 40 0 273 253 24 12 chr12 60277601 60277684 -83508771 + L1MC3 LINE L1 6735 6818 -967 229 305 0 0 chr12 60278190 60278249 -83508206 + MIR SINE MIR 31 89 -119 708 127 16 8 chr12 60279094 60279220 -83507235 + L1MA8 LINE L1 6165 6291 0 241 191 29 44 chr12 60279635 60279703 -83506752 + L2 LINE L2 3242 3308 -5 208 319 69 14 chr12 60279681 60279753 -83506702 - L2 LINE L2 -10 3262 3187 * 573 334 44 83 chr12 60280066 60280521 -83505934 + L2 LINE L2 2836 3272 0 369 399 24 5 chr12 60280673 60280886 -83505569 - L2 LINE L2 -609 2705 2489 2957 184 80 7 chr12 60280909 60281560 -83504895 - L1MB3 LINE L1 0 6174 5460 349 314 113 82 chr12 60281747 60282075 -83504380 - L3 LINE CR1 -83 1494 1157 602 259 170 9 chr12 60283590 60283814 -83502641 - MIR SINE MIR -2 260 1 1981 108 2 52 chr12 60283939 60284455 -83502000 - L1PB1 LINE L1 -50 6101 5528 1554 243 44 40 chr12 60284492 60284991 -83501464 - MLT1D LTR MaLR 0 505 5 11454 118 2 5 chr12 60285788 60287530 -83498925 - L1P LINE L1 -1001 5145 3409 270 329 91 21 chr12 60287861 60288004 -83498451 + MIR3 SINE MIR 34 186 -22 205 244 22 0 chr12 60289424 60289469 -83496986 - L2 LINE L2 0 3313 3268 268 221 0 32 chr12 60289524 60289619 -83496836 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 244 333 135 35 chr12 60289658 60289940 -83496515 - L2 LINE L2 -189 3124 2815 1661 181 120 30 chr12 60289992 60290385 -83496070 - MSTA LTR MaLR 0 428 1 1372 136 5 5 chr12 60290385 60290606 -83495849 - MSTA-int LTR MaLR 0 1580 1360 1809 170 7 3 chr12 60291169 60291475 -83494980 - AluSx SINE Alu -5 307 1 6560 159 6 52 chr12 60291912 60293177 -83493278 - MSTA-int LTR MaLR -371 1209 3 2296 233 46 53 chr12 60293342 60294324 -83492131 - Charlie2 DNA MER1_type -32 2830 1856 835 241 52 76 chr12 60294316 60294644 -83491811 - Charlie2 DNA MER1_type -2532 330 11 * 1657 172 18 0 chr12 60294686 60294965 -83491490 + AluJo SINE Alu 13 296 -16 197 273 10 111 chr12 60294966 60295065 -83491390 - MER5A DNA MER1_type -63 126 38 564 287 46 0 chr12 60295130 60295304 -83491151 - MIR SINE MIR 0 262 81 25 0 0 0 chr12 60295454 60295479 -83490976 + AT_rich Low_complexity Low_complexity 1 25 0 454 253 0 0 chr12 60295479 60295566 -83490889 - MER5A DNA MER1_type -94 95 9 496 229 144 32 chr12 60295582 60295770 -83490685 - MER3 DNA MER1_type 0 209 1 299 336 154 39 chr12 60295883 60296163 -83490292 - L2 LINE L2 -828 2486 2175 1329 203 89 3 chr12 60296244 60296569 -83489886 - L1MB5 LINE L1 -8 6166 5814 * 5311 87 35 9 chr12 60296564 60297344 -83489111 - L1PA8A LINE L1 -1 6781 5982 1404 139 5 0 chr12 60297353 60297568 -83488887 - AluSp SINE Alu -15 298 83 8206 139 13 0 chr12 60297568 60298900 -83487555 - L1PA8A LINE L1 -815 5982 4634 1696 92 0 13 chr12 60298900 60299128 -83487327 - AluSg/x SINE Alu -18 292 68 2022 183 13 2 chr12 60299128 60299522 -83486933 + L1P LINE L1 2678 3075 -3071 609 67 0 44 chr12 60299679 60299769 -83486686 - AluSq SINE Alu -158 155 70 2333 178 14 0 chr12 60299769 60300208 -83486247 + L1P LINE L1 2678 3122 -3024 494 91 0 0 chr12 60300208 60300274 -83486181 - AluSq SINE Alu -247 66 1 5195 149 30 13 chr12 60300274 60301297 -83485158 - L1PA8A LINE L1 -2150 4647 3607 13085 158 23 3 chr12 60301399 60303746 -83482709 - L1P LINE L1 -2346 3800 1407 455 153 0 0 chr12 60304568 60304653 -83481802 - L1PA8A LINE L1 -4667 2120 2036 22 0 0 0 chr12 60306504 60306526 -83479929 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 60307369 60307401 -83479054 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 60308574 60308598 -83477857 + AT_rich Low_complexity Low_complexity 1 24 0 238 257 0 43 chr12 60309303 60309373 -83477082 + MER5A DNA MER1_type 38 104 -85 369 301 130 16 chr12 60309383 60309629 -83476826 + L1ME LINE L1 4139 4412 -1734 1073 188 72 75 chr12 60309629 60309948 -83476507 - MLT1B LTR MaLR -69 321 4 314 205 11 116 chr12 60309955 60310145 -83476310 + L1ME LINE L1 4484 4653 -1493 726 280 66 71 chr12 60310182 60311331 -83475124 + L1ME LINE L1 4639 5783 -387 571 221 23 93 chr12 60313345 60313517 -83472938 - MER52A LTR ERV1 -525 1230 1071 798 200 11 185 chr12 60313521 60313808 -83472647 - LTR28 LTR ERV1 -841 179 1 24 0 0 0 chr12 60313830 60313854 -83472601 + AT_rich Low_complexity Low_complexity 1 24 0 646 270 169 43 chr12 60314850 60315265 -83471190 + MLT1L LTR MaLR 149 615 0 375 305 222 5 chr12 60315361 60315564 -83470891 + L3 LINE CR1 1330 1576 -1 22 0 0 0 chr12 60317144 60317166 -83469289 + AT_rich Low_complexity Low_complexity 1 22 0 1695 189 0 3 chr12 60317319 60317647 -83468808 - AluSx SINE Alu 0 327 1 193 77 0 0 chr12 60318273 60318299 -83468156 - L2 LINE L2 -1398 1916 1891 335 310 69 33 chr12 60319152 60319397 -83467058 - L1MC/D LINE L1 -2163 5645 5392 43207 43 3 4 chr12 60319397 60322587 -83463868 + L1PA3 LINE L1 2 3185 -2970 2505 49 0 7 chr12 60322587 60322893 -83463562 + AluY SINE Alu 1 304 -7 43207 43 3 4 chr12 60322893 60325861 -83460594 + L1PA3 LINE L1 3185 6155 0 32 26 0 0 chr12 60327795 60327834 -83458621 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr12 60329778 60329800 -83456655 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 60330564 60330592 -83455863 + AT_rich Low_complexity Low_complexity 1 28 0 381 271 33 53 chr12 60330795 60330946 -83455509 + MIR SINE MIR 103 250 -12 180 0 0 0 chr12 60331140 60331160 -83455295 + (TG)n Simple_repeat Simple_repeat 1 20 0 269 349 72 26 chr12 60331364 60331516 -83454939 + L2 LINE L2 2916 3074 -198 1818 222 88 49 chr12 60331555 60332193 -83454262 - MLT1E2 LTR MaLR -8 618 1 337 226 0 32 chr12 60332304 60332397 -83454058 - MIR SINE MIR -90 172 83 200 324 88 0 chr12 60332442 60332510 -83453945 - MIR SINE MIR -188 74 1 2078 126 3 0 chr12 60332614 60332919 -83453536 - AluSx SINE Alu 0 306 1 342 354 101 0 chr12 60333767 60333925 -83452530 - MIR SINE MIR -10 252 79 626 159 28 28 chr12 60334895 60335040 -83451415 - L1MB7 LINE L1 -9 6175 6031 1672 174 13 3 chr12 60335043 60335354 -83451101 + L1MC1 LINE L1 6005 6318 -15 383 263 8 8 chr12 60335374 60335492 -83450963 - L1MB8 LINE L1 -140 6038 5921 1513 198 7 11 chr12 60335540 60335849 -83450606 + AluJb SINE Alu 1 308 0 27 29 0 0 chr12 60336541 60336575 -83449880 + AT_rich Low_complexity Low_complexity 1 34 0 1004 202 166 4 chr12 60337081 60337328 -83449127 + AluJo SINE Alu 2 288 -14 1496 259 17 73 chr12 60337366 60338173 -83448282 - L1M4 LINE L1 -1938 4208 3447 882 298 0 0 chr12 60338461 60338676 -83447779 - LTR16A LTR ERVL 0 450 236 32 57 0 0 chr12 60338687 60338740 -83447715 + AT_rich Low_complexity Low_complexity 1 53 0 233 329 65 7 chr12 60338752 60338907 -83447548 + L1M4 LINE L1 4877 5040 -1106 13305 202 48 25 chr12 60338934 60343702 -83442753 - L1MA7 LINE L1 -2 7708 2835 351 348 27 0 chr12 60343705 60343817 -83442638 - LTR16A LTR ERVL -209 241 127 32 26 0 0 chr12 60345855 60345894 -83440561 + AT_rich Low_complexity Low_complexity 1 39 0 3771 53 0 0 chr12 60345895 60346364 -83440091 - L1PA5 LINE L1 -4 6150 5682 38 0 0 0 chr12 60346945 60346983 -83439472 + AT_rich Low_complexity Low_complexity 1 38 0 2148 124 7 0 chr12 60348833 60349132 -83437323 - AluSx SINE Alu -11 301 1 1895 235 82 21 chr12 60349341 60349826 -83436629 - L1PA12 LINE L1 -7066 515 1 22 0 0 0 chr12 60349931 60349953 -83436502 + AT_rich Low_complexity Low_complexity 1 22 0 255 189 0 0 chr12 60349966 60350019 -83436436 + (AGCTG)n Simple_repeat Simple_repeat 1 53 0 218 186 83 19 chr12 60350054 60350116 -83436339 - MIR SINE MIR -51 157 85 2271 97 0 7 chr12 60350517 60350816 -83435639 + AluSp SINE Alu 1 297 -16 805 253 192 15 chr12 60350818 60351293 -83435162 - L1MC5 LINE L1 -48 7913 7355 1996 143 49 29 chr12 60351374 60351724 -83434731 + THE1B LTR MaLR 8 364 0 3015 92 5 5 chr12 60351724 60352150 -83434305 + THE1B-int LTR MaLR 1 426 -1154 * 3220 122 58 17 chr12 60352128 60352646 -83433809 + THE1B-int LTR MaLR 1027 1565 -15 252 284 92 72 chr12 60352770 60353020 -83433435 + L3 LINE CR1 1235 1489 -88 1675 162 45 98 chr12 60353021 60353398 -83433057 + THE1B LTR MaLR 1 357 -7 10402 108 17 10 chr12 60353398 60354650 -83431805 + THE1B-int LTR MaLR 82 1347 -233 2087 141 0 0 chr12 60354650 60354948 -83431507 - AluSx SINE Alu -14 298 1 10402 108 17 10 chr12 60354948 60355184 -83431271 + THE1B-int LTR MaLR 1347 1580 0 2265 135 5 27 chr12 60355185 60355556 -83430899 + THE1B LTR MaLR 2 364 0 3015 92 5 5 chr12 60355556 60355982 -83430473 + THE1B-int LTR MaLR 1 426 -1154 * 3333 122 56 17 chr12 60355960 60356493 -83429962 + THE1B-int LTR MaLR 1027 1580 0 2072 113 87 29 chr12 60356493 60356837 -83429618 + THE1B LTR MaLR 1 364 0 265 217 294 14 chr12 60356838 60356981 -83429474 - L1MC5 LINE L1 -747 7214 7032 373 240 84 38 chr12 60356985 60357043 -83429412 - MLT1F LTR MaLR 0 595 541 1673 193 24 0 chr12 60357043 60357338 -83429117 + AluJo SINE Alu 2 303 -9 373 240 84 38 chr12 60357338 60357626 -83428829 - MLT1F LTR MaLR -54 541 126 * 453 262 226 0 chr12 60357594 60357762 -83428693 - MLT1G1 LTR MaLR -389 206 1 571 257 11 83 chr12 60357838 60358103 -83428352 - L1MC5 LINE L1 -1000 6961 6716 1479 275 146 14 chr12 60358344 60359150 -83427305 - L1MC4a LINE L1 -1445 6363 5451 21 36 0 0 chr12 60359999 60360027 -83426428 + AT_rich Low_complexity Low_complexity 1 28 0 3530 76 17 2 chr12 60360281 60360756 -83425699 - L1PA8 LINE L1 -2 6170 5689 22 56 0 0 chr12 60362805 60362841 -83423614 + AT_rich Low_complexity Low_complexity 1 36 0 1324 184 13 7 chr12 60362871 60363180 -83423275 - AluYa5 SINE Alu 0 311 1 22 56 0 0 chr12 60363947 60363983 -83422472 + AT_rich Low_complexity Low_complexity 1 36 0 2704 22 0 6 chr12 60364011 60364324 -83422131 - AluYa5 SINE Alu 0 311 1 222 105 0 0 chr12 60367048 60367086 -83419369 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 251 227 152 44 chr12 60367685 60367845 -83418610 - MIR SINE MIR -40 168 2 1194 211 55 35 chr12 60368889 60369178 -83417277 - AluJo SINE Alu -6 296 2 578 299 112 29 chr12 60369732 60370010 -83416445 - MLT1J1 LTR MaLR -61 385 85 570 279 12 6 chr12 60370986 60371158 -83415297 - MER46C DNA MER2_type -1 337 165 23 0 0 0 chr12 60371853 60371876 -83414579 + AT_rich Low_complexity Low_complexity 1 23 0 5815 106 38 2 chr12 60371876 60372793 -83413662 - L1PB2 LINE L1 -1 6150 5203 520 310 34 89 chr12 60373204 60373562 -83412893 + L3 LINE CR1 800 1137 -440 273 276 75 93 chr12 60373891 60374170 -83412285 + L3 LINE CR1 1216 1489 -88 1675 162 45 98 chr12 60374171 60374548 -83411907 + THE1B LTR MaLR 1 357 -7 10439 109 15 9 chr12 60374548 60375801 -83410654 + THE1B-int LTR MaLR 82 1347 -233 2087 141 0 0 chr12 60375801 60376099 -83410356 - AluSx SINE Alu -14 298 1 10439 109 15 9 chr12 60376099 60376335 -83410120 + THE1B-int LTR MaLR 1347 1580 0 1904 148 48 34 chr12 60376336 60376694 -83409761 + THE1B LTR MaLR 2 364 0 385 36 36 0 chr12 60377008 60377063 -83409392 + HsTC2 DNA Tc2 1838 1894 -4 211 290 81 0 chr12 60377071 60377133 -83409322 - MIR SINE MIR -18 244 178 1823 154 78 9 chr12 60377143 60377474 -83408981 + MLT1A1 LTR MaLR 12 365 0 716 167 87 1 chr12 60377531 60377543 -83408912 - MLT1J1-int LTR MaLR -228 1352 1342 2009 152 0 0 chr12 60377543 60377839 -83408616 + AluSx SINE Alu 1 296 -16 716 167 87 1 chr12 60377839 60377963 -83408492 - MLT1J1-int LTR MaLR -238 1342 1220 1250 138 0 0 chr12 60377963 60378144 -83408311 + AluSp SINE Alu 130 310 -3 240 233 82 41 chr12 60378151 60378224 -83408231 - MIR SINE MIR -172 90 15 722 284 62 61 chr12 60379461 60379768 -83406687 - L1MC4a LINE L1 -747 5544 5547 1804 175 3 17 chr12 60379768 60380065 -83406390 + AluJb SINE Alu 1 293 -19 722 284 62 61 chr12 60380065 60380335 -83406120 - L1MC4a LINE L1 -743 5548 5280 205 200 0 0 chr12 60380502 60380542 -83405913 + T-rich Low_complexity Low_complexity 1 40 0 348 302 163 18 chr12 60380618 60381359 -83405096 - L1MC4a LINE L1 -1181 4965 4117 843 223 148 18 chr12 60381422 60381651 -83404804 + MIR SINE MIR 4 262 0 26 0 0 0 chr12 60382688 60382714 -83403741 + AT_rich Low_complexity Low_complexity 1 26 0 496 303 24 18 chr12 60382745 60382910 -83403545 - MIR SINE MIR -96 166 1 392 325 170 25 chr12 60385423 60385883 -83400572 + L2 LINE L2 2691 3224 -89 667 143 9 9 chr12 60386144 60386256 -83400199 + MER3 DNA MER1_type 1 112 -97 21 36 0 0 chr12 60386832 60386860 -83399595 + AT_rich Low_complexity Low_complexity 1 28 0 237 317 41 69 chr12 60388042 60388187 -83398268 + L2 LINE L2 3171 3311 -2 22 0 0 0 chr12 60388681 60388703 -83397752 + AT_rich Low_complexity Low_complexity 1 22 0 186 333 202 0 chr12 60389294 60389378 -83397077 + L2 LINE L2 2179 2279 -1035 2306 92 0 0 chr12 60389539 60389843 -83396612 + AluY SINE Alu 1 304 -7 2103 143 33 30 chr12 60389873 60390236 -83396219 - THE1B LTR MaLR 0 364 1 24 85 0 0 chr12 60390249 60390308 -83396147 + AT_rich Low_complexity Low_complexity 1 59 0 311 309 79 33 chr12 60390833 60390985 -83395470 + MIR SINE MIR 34 192 -70 1803 161 146 13 chr12 60391106 60391484 -83394971 + MSTA LTR MaLR 1 428 0 248 174 22 0 chr12 60391502 60391548 -83394907 + MIR SINE MIR 134 180 -82 2363 78 0 0 chr12 60391722 60392018 -83394437 + AluY SINE Alu 1 296 -15 700 240 31 92 chr12 60394350 60394642 -83391813 + HAL1 LINE L1 1484 1757 -750 317 239 7 87 chr12 60394688 60394826 -83391629 + HAL1 LINE L1 1758 1884 -623 1988 188 72 30 chr12 60395251 60395893 -83390562 + MER39 LTR ERV1 1 707 0 245 213 16 0 chr12 60396198 60396259 -83390196 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 26 74 0 0 chr12 60396309 60396363 -83390092 + AT_rich Low_complexity Low_complexity 1 54 0 360 225 70 80 chr12 60396992 60397192 -83389263 + L1MC4a LINE L1 5681 5878 -1930 24 77 0 0 chr12 60397286 60397338 -83389117 + AT_rich Low_complexity Low_complexity 1 52 0 3503 68 2 0 chr12 60397605 60398048 -83388407 + MLT2A1 LTR ERVL 1 444 0 199 349 106 15 chr12 60398531 60398729 -83387726 + L3 LINE CR1 1324 1539 -38 230 311 47 34 chr12 60398908 60399056 -83387399 + HAL1 LINE L1 1 150 -2357 460 256 99 52 chr12 60399580 60399791 -83386664 + HAL1 LINE L1 946 1166 -1341 1991 145 0 14 chr12 60401181 60401478 -83384977 + AluSx SINE Alu 2 294 -18 1133 222 93 11 chr12 60401564 60401843 -83384612 + AluJo SINE Alu 1 302 0 405 123 0 0 chr12 60402297 60402362 -83384093 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 203 359 29 27 chr12 60402740 60402889 -83383566 + MIR3 SINE MIR 16 166 -42 626 267 42 81 chr12 60403245 60403530 -83382925 + MER34 LTR ERV1 1 478 -229 299 161 0 16 chr12 60403530 60403592 -83382863 + CT-rich Low_complexity Low_complexity 2 62 0 636 194 53 68 chr12 60403645 60403850 -83382605 + MER34 LTR ERV1 370 542 0 2597 106 19 0 chr12 60404051 60404419 -83382036 - THE1C LTR MaLR 0 375 1 7539 27 2 1 chr12 60404642 60406291 -83380164 - L1PA3 LINE L1 -2 6153 4503 7966 53 1 0 chr12 60406405 60407706 -83378749 - L1P3 LINE L1 -475 5697 4395 22 35 0 0 chr12 60408470 60408499 -83377956 + AT_rich Low_complexity Low_complexity 1 29 0 692 269 105 0 chr12 60409735 60409954 -83376501 + MIR SINE MIR 11 252 -10 244 317 25 54 chr12 60410200 60410335 -83376120 + MIR SINE MIR 57 187 -58 21 0 0 0 chr12 60411537 60411558 -83374897 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr12 60411615 60411642 -83374813 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr12 60412227 60412248 -83374207 + AT_rich Low_complexity Low_complexity 1 21 0 204 317 117 4 chr12 60412900 60413079 -83373376 + MIR3 SINE MIR 5 206 -56 6457 59 31 3 chr12 60413844 60414819 -83371636 + L1PA7 LINE L1 5143 6141 -13 1998 128 0 10 chr12 60415880 60416202 -83370253 + AluSx SINE Alu 1 319 0 23 68 0 0 chr12 60416205 60416249 -83370206 + AT_rich Low_complexity Low_complexity 1 44 0 1413 189 131 0 chr12 60416282 60416588 -83369867 + MER7A DNA MER2_type 3 346 0 436 300 83 72 chr12 60417372 60417526 -83368929 - L1ME4a LINE L1 -2 6119 5968 182 37 37 0 chr12 60417526 60417553 -83368902 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 436 300 83 72 chr12 60417553 60417835 -83368620 - L1ME4a LINE L1 -153 5968 5691 1981 148 137 8 chr12 60417835 60418214 -83368241 + MSTA LTR MaLR 1 428 0 8590 153 17 42 chr12 60418216 60419835 -83366620 + MSTA-int LTR MaLR 3 1580 0 1895 155 144 3 chr12 60419835 60420209 -83366246 + MSTA LTR MaLR 1 427 -1 436 300 83 72 chr12 60420209 60420283 -83366172 - L1ME4a LINE L1 -429 5692 5598 2424 229 17 42 chr12 60420342 60421101 -83365354 + Charlie1 DNA MER1_type 2015 2754 -7 281 283 18 26 chr12 60422680 60422793 -83363662 + CT-rich Low_complexity Low_complexity 3 114 0 261 0 0 0 chr12 60423027 60423056 -83363399 + (CA)n Simple_repeat Simple_repeat 1 29 0 29 0 0 0 chr12 60423291 60423320 -83363135 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 60423688 60423724 -83362731 + AT_rich Low_complexity Low_complexity 1 36 0 2482 132 53 47 chr12 60424276 60424614 -83361841 + MER101 LTR ERV1 2 345 -129 2341 74 0 10 chr12 60424614 60424923 -83361532 + AluY SINE Alu 1 306 -5 2482 132 53 47 chr12 60424923 60425054 -83361401 + MER101 LTR ERV1 345 474 0 29 0 0 0 chr12 60425692 60425721 -83360734 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr12 60425924 60425970 -83360485 + (TA)n Simple_repeat Simple_repeat 2 47 0 1792 138 190 11 chr12 60426447 60426810 -83359645 + MSTA LTR MaLR 1 428 0 1843 267 50 31 chr12 60426811 60427452 -83359003 - L1ME1 LINE L1 -6 6160 5508 316 310 92 65 chr12 60427493 60427754 -83358701 - L1ME LINE L1 -5564 506 239 1905 146 50 44 chr12 60427914 60428276 -83358179 + THE1B LTR MaLR 1 364 0 11385 110 1 4 chr12 60428276 60429861 -83356594 + THE1B-int LTR MaLR 1 1580 0 2381 112 19 22 chr12 60429861 60430226 -83356229 + THE1B LTR MaLR 1 364 0 47 19 0 0 chr12 60430488 60430542 -83355913 + AT_rich Low_complexity Low_complexity 1 54 0 244 222 0 0 chr12 60431412 60431457 -83354998 - L2 LINE L2 -10 3303 3259 219 324 28 46 chr12 60431575 60431683 -83354772 - L2 LINE L2 -224 3048 2943 248 406 41 0 chr12 60431805 60431928 -83354527 - L2 LINE L2 -608 2706 2579 183 156 0 0 chr12 60431961 60431993 -83354462 + GA-rich Low_complexity Low_complexity 2 33 0 293 203 29 29 chr12 60432014 60432083 -83354372 - MIR3 SINE MIR -48 160 92 242 222 83 104 chr12 60434058 60434202 -83352253 - MLT1A1 LTR MaLR -16 533 393 2674 136 41 0 chr12 60434230 60434641 -83351814 + MSTA LTR MaLR 1 428 0 4413 136 26 73 chr12 60434716 60435631 -83350824 - MER4D LTR ERV1 0 872 1 1197 98 0 0 chr12 60435801 60435975 -83350480 - MER7A DNA MER2_type -109 237 66 244 286 127 8 chr12 60436085 60436211 -83350244 + LTR50 LTR ERVL 67 207 -588 314 308 65 30 chr12 60436299 60436392 -83350063 + LTR50 LTR ERVL 471 574 -221 3055 140 32 60 chr12 60436392 60437022 -83349433 - LTR9 LTR ERV1 0 612 1 314 308 65 30 chr12 60437022 60437097 -83349358 + LTR50 LTR ERVL 574 645 -150 684 204 11 33 chr12 60437157 60437338 -83349117 + MER5B DNA MER1_type 1 177 -1 208 231 19 19 chr12 60438573 60438625 -83347830 - L2 LINE L2 0 3272 3221 316 144 14 173 chr12 60438890 60438960 -83347495 - LTR41 LTR ERVL -11 762 723 1809 157 24 14 chr12 60438960 60439254 -83347201 - AluJb SINE Alu -15 297 1 316 144 14 173 chr12 60439254 60439317 -83347138 - LTR41 LTR ERVL -50 723 651 643 270 0 6 chr12 60439317 60439491 -83346964 - MER58B DNA MER1_type -1 340 168 785 211 22 11 chr12 60439943 60440128 -83346327 - LTR41 LTR ERVL -585 188 2 734 217 90 16 chr12 60440959 60441148 -83345307 - MIR SINE MIR -31 231 29 1085 241 39 45 chr12 60441615 60441972 -83344483 - MLT1A1 LTR MaLR -10 355 1 618 321 60 20 chr12 60442938 60443190 -83343265 - MIR SINE MIR 0 262 1 430 323 117 37 chr12 60443218 60443518 -83342937 + L2 LINE L2 2384 2707 -607 369 285 108 83 chr12 60443611 60444164 -83342291 + L2 LINE L2 2703 3265 -7 1713 191 7 0 chr12 60444164 60444452 -83342003 + AluJb SINE Alu 1 290 -22 308 284 32 0 chr12 60444558 60444653 -83341802 + L2 LINE L2 2157 2254 -1060 219 214 71 0 chr12 60444667 60444709 -83341746 - MER91C DNA MER1_type -10 180 136 7422 82 10 12 chr12 60444751 60445722 -83340733 - LTR5 LTR ERVK 0 969 1 228 135 0 0 chr12 60445777 60445814 -83340641 + (CA)n Simple_repeat Simple_repeat 1 37 0 221 219 42 104 chr12 60446143 60446239 -83340216 - MER91C DNA MER1_type -37 103 14 940 179 25 15 chr12 60446659 60446855 -83339600 + L1MA7 LINE L1 6027 6224 -67 2145 91 50 14 chr12 60446855 60447218 -83339237 - HERVH LTR ERV1 -14 7699 7324 1197 143 23 9 chr12 60447218 60447435 -83339020 - HERVH LTR ERV1 -1894 5819 5600 2654 143 0 23 chr12 60447436 60448067 -83338388 - HERVH LTR ERV1 -2564 5149 4488 3143 90 14 4 chr12 60448070 60448557 -83337898 - HERVH LTR ERV1 -3721 3992 3501 793 160 20 0 chr12 60448554 60448704 -83337751 - HERVH LTR ERV1 -4419 3294 3142 * 16425 92 12 10 chr12 60448685 60451216 -83335239 - HERVH LTR ERV1 -4718 2995 460 3832 115 17 12 chr12 60451212 60451858 -83334597 - HERVH LTR ERV1 -7064 649 1 * 2725 90 58 21 chr12 60451858 60452292 -83334163 - LTR7 LTR ERV1 0 450 1 224 366 84 71 chr12 60452555 60452877 -83333578 + L2 LINE L2 2852 3177 -95 361 300 174 26 chr12 60453771 60454001 -83332454 + L3 LINE CR1 1211 1474 -103 342 235 0 30 chr12 60456098 60456230 -83330225 + CT-rich Low_complexity Low_complexity 3 130 0 568 287 11 2 chr12 60456315 60456508 -83329947 + MIR SINE MIR 15 247 -15 208 271 143 14 chr12 60456698 60456768 -83329687 - L2 LINE L2 -1 3312 3234 348 198 47 94 chr12 60456769 60456981 -83329474 + L1MC5 LINE L1 7637 7838 -123 319 253 43 74 chr12 60458538 60458700 -83327755 + MLT1G LTR MaLR 390 546 -44 185 330 92 83 chr12 60458771 60459209 -83327246 + L2 LINE L2 2598 3037 -235 232 350 84 35 chr12 60461419 60461645 -83324810 + L2 LINE L2 2924 3160 -112 25 0 0 0 chr12 60461878 60461903 -83324552 + AT_rich Low_complexity Low_complexity 1 25 0 2468 54 0 0 chr12 60461906 60462202 -83324253 + AluY SINE Alu 1 296 -15 233 316 126 11 chr12 60462386 60462576 -83323879 + MLT1J LTR MaLR 298 509 -2 590 324 20 19 chr12 60462592 60462831 -83323624 + MIR SINE MIR 19 262 0 3565 136 30 22 chr12 60463002 60463671 -83322784 - L1MC3 LINE L1 -3 7782 7109 371 279 54 16 chr12 60464077 60464206 -83322249 + MIR SINE MIR 108 241 -21 23 33 0 0 chr12 60464333 60464363 -83322092 + AT_rich Low_complexity Low_complexity 1 30 0 235 113 38 0 chr12 60465759 60465812 -83320643 + (CA)n Simple_repeat Simple_repeat 1 55 0 28 0 0 0 chr12 60466697 60466725 -83319730 + AT_rich Low_complexity Low_complexity 1 28 0 212 194 0 0 chr12 60468490 60468526 -83317929 + A-rich Low_complexity Low_complexity 1 36 0 281 257 71 0 chr12 60470209 60470279 -83316176 - MER81 DNA DNA -39 75 1 27 49 0 0 chr12 60470342 60470383 -83316072 + AT_rich Low_complexity Low_complexity 1 41 0 654 322 35 4 chr12 60471473 60471700 -83314755 - MIR SINE MIR 0 262 29 1851 116 63 4 chr12 60472445 60472740 -83313715 + AluSx SINE Alu 1 311 0 2379 57 3 7 chr12 60472797 60473093 -83313362 + AluY SINE Alu 1 295 -16 464 367 26 9 chr12 60473426 60473652 -83312803 - MIR SINE MIR -2 260 31 541 249 61 18 chr12 60473679 60473844 -83312611 - MER5B DNA MER1_type -4 174 3 402 344 32 14 chr12 60474963 60475181 -83311274 + MIR SINE MIR 4 225 -37 427 283 13 44 chr12 60475181 60475340 -83311115 - L2 LINE L2 -1 3312 3159 542 260 160 0 chr12 60476585 60476785 -83309670 + MIR SINE MIR 2 233 -29 725 234 6 123 chr12 60477505 60477821 -83308634 - MLT1K LTR MaLR 0 588 310 2384 65 3 19 chr12 60477891 60478198 -83308257 - AluSc SINE Alu -7 302 1 282 331 73 46 chr12 60478367 60478518 -83307937 - MIR3 SINE MIR -15 193 39 583 251 96 17 chr12 60478586 60478825 -83307630 + MIR SINE MIR 4 261 -1 320 331 151 12 chr12 60478850 60479022 -83307433 - MIR SINE MIR -50 212 17 2363 102 0 6 chr12 60479473 60479787 -83306668 + AluSx SINE Alu 1 312 0 280 303 161 23 chr12 60480611 60480770 -83305685 - MIR SINE MIR -41 221 29 255 307 0 0 chr12 60480990 60481065 -83305390 - MER5C DNA MER1_type -249 75 1 26 0 0 0 chr12 60484005 60484031 -83302424 + AT_rich Low_complexity Low_complexity 1 26 0 34 0 0 0 chr12 60484774 60484808 -83301647 + AT_rich Low_complexity Low_complexity 1 34 0 26 64 0 0 chr12 60484869 60484916 -83301539 + AT_rich Low_complexity Low_complexity 1 47 0 233 316 96 27 chr12 60485838 60486025 -83300430 - MIR SINE MIR -15 247 48 22 0 0 0 chr12 60486261 60486283 -83300172 + AT_rich Low_complexity Low_complexity 1 22 0 277 316 0 0 chr12 60487122 60487211 -83299244 + MIR SINE MIR 30 117 -98 234 308 120 26 chr12 60490376 60490493 -83295962 + MIR3 SINE MIR 15 142 -66 209 308 68 68 chr12 60490604 60490737 -83295718 + MIR3 SINE MIR 76 208 0 198 340 57 9 chr12 60491047 60491153 -83295302 - MIR SINE MIR -64 198 88 195 167 0 0 chr12 60491561 60491603 -83294852 + T-rich Low_complexity Low_complexity 2 43 0 618 264 98 33 chr12 60491975 60492251 -83294204 - MLT1I LTR MaLR 0 409 116 2252 99 0 10 chr12 60492835 60493139 -83293316 + AluSg SINE Alu 1 301 -9 284 253 147 98 chr12 60494187 60494452 -83292003 + MLT1K LTR MaLR 311 588 0 383 345 47 6 chr12 60497086 60497257 -83289198 - MIR SINE MIR -12 250 73 2200 136 0 0 chr12 60497354 60497663 -83288792 - AluSq SINE Alu -3 310 2 205 152 0 0 chr12 60498419 60498452 -83288003 + GA-rich Low_complexity Low_complexity 2 34 0 1504 183 101 46 chr12 60498789 60499226 -83287229 - MLT1C LTR MaLR 0 467 7 870 259 68 99 chr12 60499232 60499614 -83286841 + Zaphod DNA AcHobo 7 376 -3655 2350 72 10 3 chr12 60501337 60501629 -83284826 + AluY SINE Alu 2 295 -16 26 30 0 0 chr12 60501745 60501778 -83284677 + AT_rich Low_complexity Low_complexity 1 33 0 1615 211 103 21 chr12 60503150 60503317 -83283138 + MLT1C LTR MaLR 6 158 -309 1917 123 13 44 chr12 60503317 60503634 -83282821 + AluSx SINE Alu 1 307 -5 1615 211 103 21 chr12 60503634 60503892 -83282563 + MLT1C LTR MaLR 158 466 -1 1197 214 68 74 chr12 60504243 60504316 -83282139 + Zaphod DNA AcHobo 422 494 -3537 2061 113 3 29 chr12 60504316 60504627 -83281828 - AluSx SINE Alu -7 305 3 1197 214 68 74 chr12 60504627 60505109 -83281346 + Zaphod DNA AcHobo 494 974 -3057 895 246 75 6 chr12 60505142 60505500 -83280955 + Zaphod DNA AcHobo 3583 3965 -66 227 190 0 86 chr12 60505598 60505656 -83280799 + Zaphod DNA AcHobo 3979 4031 0 1631 134 68 91 chr12 60505723 60506118 -83280337 - MLT1B LTR MaLR -4 386 1 21 0 0 0 chr12 60508520 60508541 -83277914 + AT_rich Low_complexity Low_complexity 1 21 0 332 283 193 0 chr12 60508851 60509017 -83277438 + MIR SINE MIR 65 262 0 2403 213 117 40 chr12 60509145 60509976 -83276479 + L1MC3 LINE L1 6891 7785 0 615 315 55 5 chr12 60511072 60511272 -83275183 + MIR SINE MIR 21 230 -32 204 40 0 0 chr12 60513045 60513070 -83273385 + (A)n Simple_repeat Simple_repeat 1 25 0 367 287 66 25 chr12 60514190 60514312 -83272143 - L2 LINE L2 0 3272 3146 36 53 0 0 chr12 60514711 60514768 -83271687 + AT_rich Low_complexity Low_complexity 1 57 0 441 298 73 7 chr12 60514829 60514980 -83271475 - L2 LINE L2 -8 3305 3145 271 333 40 0 chr12 60515455 60515554 -83270901 - L2 LINE L2 -223 3049 2947 203 355 54 0 chr12 60516681 60516774 -83269681 - MIR SINE MIR -72 136 39 208 338 48 28 chr12 60517644 60517789 -83268666 + L2 LINE L2 2232 2379 -935 201 225 0 0 chr12 60518357 60518397 -83268058 + L3b LINE CR1 1541 1580 -3 201 359 0 13 chr12 60519743 60519821 -83266634 + L3 LINE CR1 951 1027 -550 324 212 92 82 chr12 60519822 60520006 -83266449 - MLT1J LTR MaLR -2 509 324 2329 135 0 35 chr12 60520032 60520409 -83266046 - THE1B LTR MaLR 0 364 1 450 293 53 39 chr12 60520647 60520911 -83265544 + L3 LINE CR1 1023 1348 -229 180 0 0 0 chr12 60521119 60521139 -83265316 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 294 29 0 0 chr12 60521138 60521173 -83265282 + (CA)n Simple_repeat Simple_repeat 1 35 0 305 283 44 9 chr12 60521772 60521885 -83264570 - MER94 DNA DNA -2 132 16 596 294 46 5 chr12 60522496 60522693 -83263762 + MIR SINE MIR 1 205 -57 243 260 0 0 chr12 60523690 60523740 -83262715 + L2 LINE L2 3254 3303 -10 222 370 5 72 chr12 60523736 60523944 -83262511 + L3 LINE CR1 1383 1576 -1 * 213 207 81 23 chr12 60524265 60524352 -83262103 + (AATAG)n Simple_repeat Simple_repeat 2 93 0 22 0 0 0 chr12 60525579 60525601 -83260854 + AT_rich Low_complexity Low_complexity 1 22 0 489 260 89 27 chr12 60526344 60526490 -83259965 + MIR SINE MIR 57 211 -51 423 304 89 13 chr12 60526570 60526728 -83259727 + MIR3 SINE MIR 3 172 -36 2040 95 0 23 chr12 60527014 60527319 -83259136 + AluY SINE Alu 1 298 -13 598 274 96 9 chr12 60527836 60528066 -83258389 + MIR SINE MIR 13 262 0 310 364 38 24 chr12 60528162 60528340 -83258115 - MIR SINE MIR -60 202 18 385 320 140 11 chr12 60528378 60528556 -83257899 - MIR SINE MIR -21 241 41 371 263 256 0 chr12 60528718 60528855 -83257600 - MIR SINE MIR -38 224 53 208 278 19 0 chr12 60529050 60529104 -83257351 - L2 LINE L2 -79 3193 3139 192 288 38 38 chr12 60529224 60529304 -83257151 + MER5B DNA MER1_type 1 80 -98 44 35 0 0 chr12 60530868 60530926 -83255529 + AT_rich Low_complexity Low_complexity 1 58 0 288 322 67 53 chr12 60531160 60531368 -83255087 - L2 LINE L2 -235 3037 2827 196 294 96 48 chr12 60532573 60532719 -83253736 - L2 LINE L2 -290 2982 2830 345 247 21 11 chr12 60533790 60533883 -83252572 - MIR SINE MIR -65 197 104 435 240 100 20 chr12 60537195 60537345 -83249110 - L1MC5 LINE L1 -87 7874 7713 196 325 24 57 chr12 60537803 60537926 -83248529 + MIR3 SINE MIR 5 123 -85 881 269 19 39 chr12 60539216 60539472 -83246983 + MIR SINE MIR 12 262 0 371 335 68 24 chr12 60539496 60539702 -83246753 - MIR SINE MIR -1 261 47 195 388 93 16 chr12 60540084 60540342 -83246113 + L2 LINE L2 2944 3221 -92 310 286 48 9 chr12 60540685 60540790 -83245665 + MIR SINE MIR 134 242 -20 2147 124 3 0 chr12 60541491 60541798 -83244657 + AluSx SINE Alu 1 308 -4 927 248 32 5 chr12 60541895 60542113 -83244342 - MER58A DNA MER1_type 0 224 1 304 197 45 0 chr12 60542215 60542281 -83244174 + MIR SINE MIR 150 218 -44 852 290 34 25 chr12 60542313 60542408 -83244047 + MIR SINE MIR 23 116 -146 2922 163 61 14 chr12 60542408 60542986 -83243469 - MER6A DNA MER2_type 0 605 1 852 290 34 25 chr12 60542986 60543128 -83243327 + MIR SINE MIR 116 262 0 1735 181 46 0 chr12 60544077 60544447 -83242008 - Charlie5 DNA MER1_type 0 2624 2238 495 188 14 65 chr12 60544460 60544598 -83241857 - MER3 DNA MER1_type -42 167 37 52 50 0 0 chr12 60544809 60544889 -83241566 + AT_rich Low_complexity Low_complexity 1 80 0 230 180 0 20 chr12 60546230 60546280 -83240175 - MER51C LTR ERV1 -175 465 417 253 365 81 51 chr12 60546636 60547066 -83239389 - L2 LINE L2 0 3272 2830 928 259 59 0 chr12 60547411 60547647 -83238808 - MIR SINE MIR -12 250 1 261 299 78 8 chr12 60548690 60548851 -83237604 + MIR SINE MIR 17 206 -56 2226 84 0 3 chr12 60550017 60550336 -83236119 + AluSx SINE Alu 1 318 0 721 190 16 0 chr12 60550526 60550647 -83235808 + FLAM_A SINE Alu 1 123 -10 22 35 0 0 chr12 60550649 60550678 -83235777 + AT_rich Low_complexity Low_complexity 1 29 0 6372 225 80 77 chr12 60551588 60553641 -83232814 - L1ME1 LINE L1 -231 6004 3808 615 187 30 52 chr12 60553641 60553775 -83232680 + AluJo SINE Alu 87 217 -95 6372 225 80 77 chr12 60553775 60554677 -83231778 - L1ME1 LINE L1 -2427 3808 2911 2059 97 3 21 chr12 60554687 60554977 -83231478 - AluSx SINE Alu -12 300 16 788 254 68 8 chr12 60554994 60555246 -83231209 - L1ME1 LINE L1 -3388 2827 2561 3754 258 70 48 chr12 60555252 60556755 -83229700 - L1ME1 LINE L1 -4852 1544 8 23 0 0 0 chr12 60557586 60557609 -83228846 + AT_rich Low_complexity Low_complexity 1 23 0 18444 28 0 0 chr12 60558468 60561435 -83225020 + L1PA4 LINE L1 3185 6152 -3 181 311 0 0 chr12 60561483 60561528 -83224927 - L2 LINE L2 -235 3037 2993 283 308 62 38 chr12 60562698 60562987 -83223468 + HAL1b LINE L1 224 519 -829 383 310 147 15 chr12 60563066 60563263 -83223192 - MIR SINE MIR -27 235 13 22 56 0 0 chr12 60564219 60564255 -83222200 + AT_rich Low_complexity Low_complexity 1 36 0 1709 185 4 0 chr12 60564258 60564539 -83221916 - AluJo SINE Alu -30 282 1 256 204 23 80 chr12 60564736 60564824 -83221631 + L2 LINE L2 3231 3313 0 271 264 75 38 chr12 60565040 60565146 -83221309 - MIR SINE MIR -64 198 89 1954 157 22 19 chr12 60565275 60565638 -83220817 - THE1B LTR MaLR 0 364 1 4964 130 28 3 chr12 60565921 60566883 -83219572 - L1PA15 LINE L1 -147 6018 5034 2153 201 38 18 chr12 60566884 60567386 -83219069 + L1PA15 LINE L1 4550 5061 -1085 594 293 106 81 chr12 60568595 60568862 -83217593 + L2 LINE L2 2383 2642 -671 2068 126 33 0 chr12 60568862 60569164 -83217291 + AluSx SINE Alu 1 312 0 594 293 106 81 chr12 60569164 60569802 -83216653 + L2 LINE L2 2642 3313 0 284 318 187 0 chr12 60570125 60570232 -83216223 + MIR SINE MIR 35 161 -101 556 168 11 0 chr12 60570234 60570356 -83216099 + AluSg/x SINE Alu 188 310 0 221 260 39 0 chr12 60570488 60570565 -83215890 + MIR SINE MIR 182 261 -1 198 346 103 0 chr12 60571190 60571268 -83215187 - L2 LINE L2 -218 3054 2969 737 339 34 0 chr12 60571296 60571529 -83214926 - MIR SINE MIR 0 262 22 1915 64 32 32 chr12 60572175 60572455 -83214000 - L1PA8A LINE L1 -29 6102 5823 891 299 17 0 chr12 60572853 60573084 -83213371 + MIR SINE MIR 3 237 -25 625 145 57 8 chr12 60573334 60573458 -83212997 + L1MA5A LINE L1 6166 6295 -2 1617 84 0 5 chr12 60573804 60574031 -83212424 - AluY SINE Alu 0 305 80 234 0 0 0 chr12 60574311 60574337 -83212118 + (A)n Simple_repeat Simple_repeat 1 26 0 549 320 71 28 chr12 60574397 60574722 -83211733 + L3 LINE CR1 1238 1576 -1 349 260 38 95 chr12 60574858 60574893 -83211562 - MIR SINE MIR -30 232 197 1414 193 82 69 chr12 60574893 60575354 -83211101 + MLT1C LTR MaLR 1 467 0 349 260 38 95 chr12 60575354 60575547 -83210908 - MIR SINE MIR -65 197 24 21 0 0 0 chr12 60576282 60576303 -83210152 + AT_rich Low_complexity Low_complexity 1 21 0 282 73 0 0 chr12 60576438 60576479 -83209976 + (TG)n Simple_repeat Simple_repeat 2 42 0 496 121 61 0 chr12 60576532 60576664 -83209791 + (TA)n Simple_repeat Simple_repeat 2 141 0 331 157 24 60 chr12 60576680 60576813 -83209642 + (TA)n Simple_repeat Simple_repeat 2 129 -32 261 57 0 0 chr12 60576813 60576848 -83209607 + (TG)n Simple_repeat Simple_repeat 2 36 0 331 157 24 60 chr12 60576848 60576880 -83209575 + (TA)n Simple_repeat Simple_repeat 129 161 0 496 131 44 29 chr12 60576901 60577162 -83209293 + (TA)n Simple_repeat Simple_repeat 1 264 0 369 0 0 0 chr12 60577177 60577218 -83209237 + (TG)n Simple_repeat Simple_repeat 2 42 0 581 92 10 0 chr12 60577275 60577373 -83209082 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 230 247 43 65 chr12 60577472 60577565 -83208890 - L2 LINE L2 -3 3310 3220 227 314 219 24 chr12 60577565 60577775 -83208680 + MIR SINE MIR 2 252 -10 241 310 0 0 chr12 60578315 60578373 -83208082 + MIR SINE MIR 205 262 0 186 286 20 0 chr12 60579241 60579290 -83207165 - MIR SINE MIR -93 115 66 1589 119 52 0 chr12 60579465 60579716 -83206739 + L1MA3 LINE L1 5516 5779 -521 2046 131 3 3 chr12 60580944 60581256 -83205199 + AluSx SINE Alu 1 312 0 1765 121 37 3 chr12 60581429 60581727 -83204728 + L1MA3 LINE L1 5998 6305 0 1437 141 0 0 chr12 60582479 60582721 -83203734 - L1MA6 LINE L1 -3 6297 6056 524 380 91 20 chr12 60582743 60583096 -83203359 + L2 LINE L2 2893 3270 -2 29 28 0 0 chr12 60583772 60583808 -83202647 + AT_rich Low_complexity Low_complexity 1 36 0 219 196 0 22 chr12 60584098 60584144 -83202311 + CT-rich Low_complexity Low_complexity 3 47 0 24 53 0 0 chr12 60585537 60585575 -83200880 + AT_rich Low_complexity Low_complexity 1 38 0 1116 174 89 34 chr12 60586116 60586408 -83200047 - THE1C LTR MaLR -101 325 1 312 261 152 7 chr12 60587382 60587520 -83198935 + L2 LINE L2 3154 3311 -2 659 240 0 0 chr12 60588585 60588714 -83197741 + FLAM_A SINE Alu 1 129 -4 681 156 0 0 chr12 60588731 60588840 -83197615 + FRAM SINE Alu 1 104 -72 2469 188 9 20 chr12 60588840 60589287 -83197168 + LTR32 LTR ERVL 17 458 -13 347 145 16 0 chr12 60589286 60589348 -83197107 + Alu SINE Alu 236 298 -2 * 2356 87 0 0 chr12 60589360 60589659 -83196796 + AluSx SINE Alu 1 299 -13 504 89 0 0 chr12 60589670 60589749 -83196706 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1860 160 101 49 chr12 60589977 60590257 -83196198 - MER31A LTR ERV1 -30 455 142 1624 134 94 22 chr12 60590257 60590378 -83196077 + AluSx SINE Alu 1 112 -237 2555 57 0 0 chr12 60590378 60590678 -83195777 + AluY SINE Alu 1 300 -11 1624 134 94 22 chr12 60590678 60590885 -83195570 + AluSx SINE Alu 112 349 0 1860 160 101 49 chr12 60590885 60591028 -83195427 - MER31A LTR ERV1 -343 142 8 1175 172 46 13 chr12 60591302 60591540 -83194915 - L1PA16 LINE L1 -15 6151 5906 422 239 18 0 chr12 60592008 60592121 -83194334 + L1MA9 LINE L1 6168 6282 -30 597 202 34 0 chr12 60592819 60592938 -83193517 - FLAM_A SINE Alu -10 123 1 763 185 93 19 chr12 60593096 60593258 -83193197 - MER63A DNA MER1_type -36 174 1 232 362 68 28 chr12 60594388 60594565 -83191890 - MIR3 SINE MIR -1 207 24 295 309 154 0 chr12 60595341 60595451 -83191004 - L3 LINE CR1 -11 1566 1440 431 202 46 9 chr12 60595509 60595618 -83190837 + L1MC4a LINE L1 7365 7477 -331 570 196 9 0 chr12 60595627 60595734 -83190721 + MLT1A1 LTR MaLR 258 365 0 708 89 6 172 chr12 60595756 60595925 -83190530 + L1MD3 LINE L1 7840 7980 -15 2176 121 0 0 chr12 60595939 60596237 -83190218 + AluSx SINE Alu 1 298 -14 361 226 338 15 chr12 60596561 60596694 -83189761 + MER5B DNA MER1_type 1 176 -2 275 272 0 25 chr12 60597222 60597303 -83189152 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 385 266 76 52 chr12 60598094 60598139 -83188316 + L1ME4a LINE L1 5624 5666 -455 2375 98 0 0 chr12 60598139 60598446 -83188009 + AluSc SINE Alu 2 308 -1 385 266 76 52 chr12 60598446 60598690 -83187765 + L1ME4a LINE L1 5666 5920 -201 782 258 56 9 chr12 60598736 60598949 -83187506 + MIR SINE MIR 40 262 0 209 146 21 0 chr12 60598952 60599000 -83187455 + (TTA)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr12 60599995 60600017 -83186438 + AT_rich Low_complexity Low_complexity 1 22 0 217 324 18 36 chr12 60600375 60600486 -83185969 + MIR SINE MIR 39 147 -61 380 309 115 5 chr12 60601166 60601357 -83185098 + L2 LINE L2 1785 1996 -1318 201 311 88 50 chr12 60601407 60601645 -83184810 + L2 LINE L2 2243 2489 -825 194 346 115 28 chr12 60601779 60602065 -83184390 + L2 LINE L2 2109 2419 -895 226 279 209 32 chr12 60602066 60602224 -83184231 + L2 LINE L2 2336 2521 -793 7862 176 42 19 chr12 60602951 60605962 -83180493 + L1PBa LINE L1 325 3265 -3597 2005 99 81 14 chr12 60605962 60606246 -83180209 + AluSx SINE Alu 1 303 -9 7862 176 42 19 chr12 60606246 60606479 -83179976 + L1PBa LINE L1 3265 3491 -3371 180 0 0 0 chr12 60606479 60606499 -83179956 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7862 176 42 19 chr12 60606499 60606535 -83179920 + L1PBa LINE L1 3491 3525 -3337 2190 126 3 0 chr12 60606535 60606837 -83179618 + AluSp SINE Alu 2 304 -9 7862 176 42 19 chr12 60606837 60607336 -83179119 + L1PBa LINE L1 3525 4410 -2452 985 44 0 15 chr12 60607342 60607477 -83178978 + L1P LINE L1 5354 5486 -1376 497 99 0 12 chr12 60607462 60607543 -83178912 + L1 LINE L1 5407 5486 -1376 * 605 37 0 12 chr12 60607528 60607609 -83178846 + L1P LINE L1 4691 4770 -1376 * 3961 33 2 0 chr12 60607594 60608082 -83178373 + L1P LINE L1 4691 5179 -967 6725 54 0 0 chr12 60608082 60608909 -83177546 + L1PA5 LINE L1 5317 6149 -5 1490 212 0 13 chr12 60608909 60609216 -83177239 + L1 LINE L1 3697 4001 -2145 279 0 0 0 chr12 60609217 60609248 -83177207 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 338 0 24 0 chr12 60609247 60609289 -83177166 + (TA)n Simple_repeat Simple_repeat 1 43 0 2146 129 29 6 chr12 60609294 60609644 -83176811 + L1PB1 LINE L1 5794 6151 0 438 319 7 28 chr12 60609646 60609790 -83176665 + MIR SINE MIR 43 183 -79 2174 117 0 3 chr12 60609824 60610114 -83176341 + AluSg SINE Alu 3 291 -19 1880 174 6 18 chr12 60610145 60610484 -83175971 - MER1B DNA MER1_type 0 337 3 669 198 0 56 chr12 60611347 60611509 -83174946 + FRAM SINE Alu 23 175 -1 255 282 48 19 chr12 60612590 60612693 -83173762 - MIR SINE MIR -76 186 81 316 346 0 9 chr12 60613205 60613312 -83173143 + L2 LINE L2 2609 2714 -600 186 189 0 0 chr12 60613598 60613635 -83172820 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 439 242 108 27 chr12 60613640 60613826 -83172629 - L1ME3A LINE L1 -219 6187 5987 2305 130 13 16 chr12 60613844 60614220 -83172235 - THE1C LTR MaLR 0 375 1 1680 161 47 10 chr12 60614250 60614549 -83171906 + MLT1A1 LTR MaLR 56 365 0 567 268 104 64 chr12 60614550 60614739 -83171716 - L1ME3A LINE L1 -422 5976 5796 746 280 47 0 chr12 60614739 60614953 -83171502 + MER58A DNA MER1_type 1 224 0 567 268 104 64 chr12 60614953 60615293 -83171162 - L1ME3A LINE L1 -602 5796 5471 234 0 0 0 chr12 60615293 60615319 -83171136 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 279 0 0 0 chr12 60615318 60615349 -83171106 + (TG)n Simple_repeat Simple_repeat 2 32 0 567 268 104 64 chr12 60615319 60615377 -83171078 - L1ME3A LINE L1 -927 5471 5417 198 0 0 0 chr12 60615377 60615399 -83171056 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 1593 181 18 0 chr12 60615399 60615676 -83170779 - AluJo SINE Alu -30 282 1 567 268 104 64 chr12 60615676 60616043 -83170412 - L1ME3A LINE L1 -980 5418 5000 1999 154 31 3 chr12 60616215 60616565 -83169890 - MER46B DNA MER2_type -1 235 1 581 323 37 7 chr12 60616836 60617133 -83169322 - L1ME3A LINE L1 -2036 4346 4041 384 262 50 20 chr12 60617142 60617344 -83169111 - L1ME3A LINE L1 -3090 3292 3085 387 330 17 9 chr12 60617560 60617790 -83168665 - L1ME3A LINE L1 -3383 2999 2768 332 257 57 45 chr12 60617854 60618109 -83168346 - L1ME3A LINE L1 -3756 2626 2373 321 26 0 0 chr12 60619530 60619568 -83166887 + (CA)n Simple_repeat Simple_repeat 2 39 0 269 315 19 65 chr12 60619572 60619680 -83166775 - L2 LINE L2 -25 3247 3145 2498 65 0 7 chr12 60619786 60620096 -83166359 - AluY SINE Alu -3 308 1 1002 292 84 28 chr12 60621878 60622729 -83163726 - L2 LINE L2 -7 3306 2400 252 59 0 0 chr12 60622800 60622834 -83163621 + (CA)n Simple_repeat Simple_repeat 2 35 0 298 325 12 0 chr12 60623346 60623429 -83163026 - MER5A DNA MER1_type -37 152 69 396 0 0 0 chr12 60623439 60623483 -83162972 + (TTA)n Simple_repeat Simple_repeat 2 45 0 725 199 31 37 chr12 60623486 60623647 -83162808 - AluJo SINE Alu -30 282 123 456 276 167 22 chr12 60625738 60625966 -83160489 + MIR SINE MIR 2 262 0 2264 112 0 3 chr12 60626116 60626419 -83160036 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr12 60627398 60627421 -83159034 + AT_rich Low_complexity Low_complexity 1 23 0 205 315 55 0 chr12 60627618 60627691 -83158764 - MIR SINE MIR -102 160 84 213 224 0 20 chr12 60627828 60627877 -83158578 + GA-rich Low_complexity Low_complexity 2 49 0 297 0 0 0 chr12 60629051 60629084 -83157371 + (TG)n Simple_repeat Simple_repeat 2 34 0 1876 144 3 32 chr12 60629412 60629539 -83156916 + AluJb SINE Alu 1 130 -182 225 65 0 0 chr12 60629539 60629570 -83156885 + (TA)n Simple_repeat Simple_repeat 1 31 0 1876 144 3 32 chr12 60629570 60629754 -83156701 + AluJb SINE Alu 130 303 -9 268 264 56 14 chr12 60630394 60630466 -83155989 - MIR SINE MIR -114 148 74 571 360 156 20 chr12 60630665 60631071 -83155384 - L2 LINE L2 -343 2971 2621 207 0 0 0 chr12 60631071 60631094 -83155361 + (TGG)n Simple_repeat Simple_repeat 1 23 0 571 360 156 20 chr12 60631094 60631417 -83155038 - L2 LINE L2 -693 2621 2143 2130 115 0 31 chr12 60631594 60631916 -83154539 + AluSx SINE Alu 1 312 0 219 241 0 0 chr12 60632351 60632405 -83154050 + T-rich Low_complexity Low_complexity 5 58 0 21 0 0 0 chr12 60634985 60635006 -83151449 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 60637840 60637862 -83148593 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 60640665 60640690 -83145765 + AT_rich Low_complexity Low_complexity 1 25 0 2444 68 0 0 chr12 60641413 60641706 -83144749 - AluY SINE Alu -18 293 1 2291 97 3 0 chr12 60643283 60643593 -83142862 - AluY SINE Alu 0 311 1 319 270 27 0 chr12 60643605 60643679 -83142776 - MER5A DNA MER1_type -57 132 57 221 282 73 68 chr12 60643917 60644123 -83142332 - L2 LINE L2 -556 2758 2552 * 722 272 118 0 chr12 60644104 60644332 -83142123 + MIR SINE MIR 7 261 -1 630 248 79 31 chr12 60644342 60644596 -83141859 - L2 LINE L2 -4 3309 3044 529 258 105 36 chr12 60644595 60644901 -83141554 - L2 LINE L2 -14 3299 2973 * 22 35 0 0 chr12 60644975 60645004 -83141451 + AT_rich Low_complexity Low_complexity 1 29 0 243 258 106 76 chr12 60646137 60646337 -83140118 + MIR SINE MIR 21 216 -46 2161 138 34 78 chr12 60647942 60648390 -83138065 - MSTC LTR MaLR 0 428 1 477 352 164 19 chr12 60648658 60649181 -83137274 + L2 LINE L2 2670 3272 0 7303 37 11 1 chr12 60649816 60651348 -83135107 + L1PA3 LINE L1 4615 6155 0 1063 330 170 26 chr12 60652004 60652302 -83134153 - L3 LINE CR1 -88 1489 1235 832 189 130 11 chr12 60652302 60652487 -83133968 + MER3 DNA MER1_type 2 208 -1 1063 330 170 26 chr12 60652487 60653180 -83133275 - L3 LINE CR1 -342 1235 355 1316 267 127 67 chr12 60653408 60654676 -83131779 + HAL1 LINE L1 10 1353 -1154 564 251 12 25 chr12 60654725 60654888 -83131567 + MER5A DNA MER1_type 29 189 0 441 280 151 0 chr12 60654937 60654964 -83131491 + HAL1 LINE L1 1540 1562 -945 2325 99 0 0 chr12 60654964 60655268 -83131187 + AluSc SINE Alu 1 304 -5 441 280 151 0 chr12 60655268 60655472 -83130983 + HAL1 LINE L1 1562 1806 -701 299 303 227 8 chr12 60655572 60655704 -83130751 - MIR3 SINE MIR -6 202 42 621 241 0 0 chr12 60656341 60656457 -83129998 - FLAM_A SINE Alu -17 116 1 314 331 41 66 chr12 60658141 60658752 -83127703 + L2 LINE L2 2622 3214 -58 227 361 9 0 chr12 60661158 60661266 -83125189 + MIR SINE MIR 153 261 -1 861 222 21 0 chr12 60661914 60662103 -83124352 + MER3 DNA MER1_type 10 202 -7 1657 162 32 23 chr12 60662512 60662821 -83123634 + AluJo SINE Alu 1 312 0 241 274 0 0 chr12 60664051 60664102 -83122353 - L3b LINE CR1 -1 1582 1532 965 189 0 6 chr12 60664347 60664516 -83121939 + MER5B DNA MER1_type 11 178 0 186 43 0 0 chr12 60668251 60668274 -83118181 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr12 60668366 60668387 -83118068 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 66 11 chr12 60668411 60668502 -83117953 - MIR SINE MIR -28 234 139 216 187 27 67 chr12 60669844 60669919 -83116536 + MIR SINE MIR 151 222 -40 206 73 0 49 chr12 60669961 60670002 -83116453 + (TTTTTA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr12 60671515 60671537 -83114918 + AT_rich Low_complexity Low_complexity 1 22 0 192 338 44 0 chr12 60671572 60671640 -83114815 - MIR SINE MIR -95 113 43 2173 107 0 28 chr12 60673590 60673908 -83112547 - AluSg SINE Alu 0 310 2 495 284 109 0 chr12 60674002 60674185 -83112270 + MIR SINE MIR 48 250 -12 184 290 0 65 chr12 60674455 60674517 -83111938 - MIR SINE MIR -126 136 79 237 333 21 69 chr12 60674535 60674679 -83111776 + MIR3 SINE MIR 6 142 -66 2258 102 0 37 chr12 60677840 60678162 -83108293 - AluSx SINE Alu -2 310 1 1700 51 9 0 chr12 60682518 60682733 -83103722 - L1PA4 LINE L1 0 6155 5939 198 406 111 0 chr12 60685425 60685605 -83100850 + L2 LINE L2 2553 2752 -562 191 321 60 36 chr12 60685774 60685858 -83100597 - L2 LINE L2 -5 3267 3182 305 287 96 27 chr12 60686778 60686893 -83099562 - L1M4 LINE L1 -3780 2366 2232 1064 160 61 0 chr12 60686893 60687124 -83099331 + L1MB2 LINE L1 5926 6170 -1 305 287 96 27 chr12 60687124 60687196 -83099259 - L1M4 LINE L1 -3914 2232 2166 2746 169 38 12 chr12 60687196 60687698 -83098757 - MLT2B2 LTR ERVL 0 515 1 2183 106 38 0 chr12 60687745 60688038 -83098417 - AluSg SINE Alu -5 305 2 229 271 0 24 chr12 60688045 60688130 -83098325 + T-rich Low_complexity Low_complexity 2 84 0 871 240 29 57 chr12 60688412 60688658 -83097797 + MER8 DNA MER2_type 1 239 0 405 322 181 10 chr12 60688710 60689008 -83097447 - HAL1 LINE L1 -856 1651 1303 2080 269 190 22 chr12 60690460 60691261 -83095194 - L2 LINE L2 -4 3309 2644 2164 118 0 10 chr12 60691261 60691565 -83094890 + AluSx SINE Alu 5 305 -7 2080 269 190 22 chr12 60691565 60691913 -83094542 - L2 LINE L2 -669 2644 1977 2407 121 33 3 chr12 60691914 60692277 -83094178 + THE1C LTR MaLR 2 375 0 9400 130 37 3 chr12 60692277 60693797 -83092658 + THE1C-int LTR MaLR 1 1571 -9 1858 111 22 97 chr12 60693797 60694167 -83092288 + THE1C LTR MaLR 7 348 -27 6057 58 32 4 chr12 60694167 60694926 -83091529 + LTR17 LTR ERV1 1 780 0 45945 47 12 19 chr12 60694926 60700983 -83085472 + HERV17 LTR ERV1 1 6019 -2607 268 77 0 0 chr12 60700976 60701015 -83085440 + HERV17 LTR ERV1 7510 7548 -1078 * 2174 76 0 0 chr12 60701005 60701293 -83085162 + HERV17 LTR ERV1 8335 8622 -4 6023 63 30 3 chr12 60701297 60702056 -83084399 + LTR17 LTR ERV1 1 780 0 896 310 26 30 chr12 60702109 60702448 -83084007 - L2 LINE L2 -1366 1948 1611 316 309 136 47 chr12 60703526 60703717 -83082738 + MIR SINE MIR 3 210 -52 185 320 10 58 chr12 60704015 60704118 -83082337 + MIR SINE MIR 124 221 -41 205 294 29 0 chr12 60705674 60705742 -83080713 + GA-rich Low_complexity Low_complexity 3 72 0 337 353 34 44 chr12 60707104 60707308 -83079147 + L2 LINE L2 2862 3063 -209 578 228 121 36 chr12 60707314 60707538 -83078917 + L2 LINE L2 1297 1539 -1775 3522 286 70 31 chr12 60708096 60709797 -83076658 + L2 LINE L2 1534 3305 -8 194 304 200 22 chr12 60709811 60709946 -83076509 + L2 LINE L2 3097 3255 -17 270 228 11 22 chr12 60710519 60710611 -83075844 + (TA)n Simple_repeat Simple_repeat 1 91 0 256 159 32 0 chr12 60710724 60710787 -83075668 + (TA)n Simple_repeat Simple_repeat 1 65 0 299 265 6 93 chr12 60710941 60711103 -83075352 - MIR SINE MIR -5 257 110 563 320 84 19 chr12 60711135 60711635 -83074820 - L1ME LINE L1 -667 5497 4962 28291 110 10 31 chr12 60712099 60717482 -83068973 + L1P3 LINE L1 5 5416 -1045 3036 52 13 0 chr12 60717484 60717869 -83068586 + L1PA7 LINE L1 5765 6154 0 186 103 0 0 chr12 60719202 60719231 -83067224 + (CA)n Simple_repeat Simple_repeat 2 30 0 514 309 22 11 chr12 60720419 60720597 -83065858 + MIR SINE MIR 50 229 -33 323 346 8 31 chr12 60720668 60720798 -83065657 - MIR3 SINE MIR -48 160 34 1582 181 7 0 chr12 60720936 60721217 -83065238 + AluSx SINE Alu 5 287 -25 187 265 20 0 chr12 60723014 60723063 -83063392 + L2 LINE L2 3211 3260 -12 510 141 61 0 chr12 60723672 60723771 -83062684 + L1MB7 LINE L1 6064 6168 -16 262 237 17 0 chr12 60723773 60723891 -83062564 + (TA)n Simple_repeat Simple_repeat 2 121 0 1710 182 3 10 chr12 60724444 60724740 -83061715 - AluJo SINE Alu -17 295 2 205 311 47 28 chr12 60725574 60725680 -83060775 - L2 LINE L2 -41 3272 3165 741 293 42 36 chr12 60725804 60726163 -83060292 + LTR16C LTR ERVL 1 361 -130 3965 133 102 33 chr12 60726833 60727878 -83058577 + MER41-int LTR ERV1 127 1328 -4618 454 359 47 0 chr12 60728316 60728486 -83057969 - MIR3 SINE MIR -1 207 30 21 0 0 0 chr12 60728829 60728850 -83057605 + AT_rich Low_complexity Low_complexity 1 21 0 1273 117 0 0 chr12 60730855 60731052 -83055403 + L1MA7 LINE L1 6091 6287 -4 1111 209 130 30 chr12 60731981 60732312 -83054143 - Looper DNA T2_type -264 1294 931 1280 230 0 24 chr12 60732361 60732648 -83053807 - AluJb SINE Alu -32 280 1 270 265 24 0 chr12 60733098 60733181 -83053274 - L1MC4 LINE L1 -1339 6703 6619 * 2045 146 3 49 chr12 60733176 60733546 -83052909 + L1PA15 LINE L1 5792 6144 -21 301 308 96 0 chr12 60734393 60734497 -83051958 + L2 LINE L2 3151 3264 -8 3236 152 36 25 chr12 60734645 60734893 -83051562 - MER73 LTR ERVL 0 644 400 2076 134 0 0 chr12 60734893 60735192 -83051263 + AluSx SINE Alu 1 299 -13 3236 152 36 25 chr12 60735192 60735580 -83050875 - MER73 LTR ERVL -244 400 1 26 50 0 0 chr12 60735710 60735750 -83050705 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr12 60735800 60735833 -83050622 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 60735911 60735940 -83050515 + AT_rich Low_complexity Low_complexity 1 29 0 2361 161 40 0 chr12 60736486 60736891 -83049564 + MSTA LTR MaLR 8 428 0 320 275 0 0 chr12 60738385 60738454 -83048001 - L3 LINE CR1 -94 1483 1415 22 56 0 0 chr12 60738801 60738837 -83047618 + AT_rich Low_complexity Low_complexity 1 36 0 344 285 38 19 chr12 60739498 60739519 -83046936 - L1MA10 LINE L1 -3 6331 6311 5966 229 38 40 chr12 60739519 60740927 -83045528 - L1ME1 LINE L1 -14 6221 4820 1017 261 88 38 chr12 60740927 60741372 -83045083 + MLT1C LTR MaLR 1 467 0 5966 229 38 40 chr12 60741372 60742678 -83043777 - L1ME1 LINE L1 -1415 4820 3512 23 0 0 29 chr12 60742678 60742692 -83043763 + AT_rich Low_complexity Low_complexity 1 14 -19 3221 112 25 17 chr12 60742692 60743211 -83043244 - L1MA4A LINE L1 -6 6297 5775 23 0 0 29 chr12 60743211 60743230 -83043225 + AT_rich Low_complexity Low_complexity 14 33 0 3983 96 0 2 chr12 60743230 60743783 -83042672 - L1PA12 LINE L1 -1 6167 5616 8637 171 59 5 chr12 60743800 60744253 -83042202 - L1MA4A LINE L1 -535 5768 5341 323 43 0 22 chr12 60744253 60744299 -83042156 + (TTA)n Simple_repeat Simple_repeat 2 46 0 8637 171 59 5 chr12 60744299 60746047 -83040408 - L1MA4A LINE L1 -962 5341 3443 1499 256 50 2 chr12 60746045 60746548 -83039907 - L1ME1 LINE L1 -3393 2822 2296 * 1897 231 93 11 chr12 60746536 60747182 -83039273 - L1ME1 LINE L1 -3994 2402 1704 1600 294 55 14 chr12 60747224 60747792 -83038663 - L1ME1 LINE L1 -5767 629 39 341 141 141 0 chr12 60747796 60747867 -83038588 + MER3 DNA MER1_type 127 207 -2 422 235 41 0 chr12 60747876 60747974 -83038481 + L1ME3A LINE L1 6063 6164 -6 234 0 0 0 chr12 60748055 60748081 -83038374 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 303 28 0 0 chr12 60748080 60748116 -83038339 + (TG)n Simple_repeat Simple_repeat 1 36 0 1963 105 46 3 chr12 60748647 60748932 -83037523 - AluSg SINE Alu -13 297 1 276 170 0 0 chr12 60748955 60749008 -83037447 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 255 333 20 91 chr12 60749220 60749626 -83036829 - L2 LINE L2 -242 3030 2645 2257 111 3 0 chr12 60749711 60750017 -83036438 + AluSc SINE Alu 1 307 -2 197 281 176 33 chr12 60750505 60750658 -83035797 + MIR SINE MIR 31 205 -57 543 282 20 26 chr12 60751806 60752001 -83034454 - MLT1L LTR MaLR 0 615 422 1937 205 127 90 chr12 60752134 60752980 -83033475 - LTR28 LTR ERV1 -13 819 1 379 161 0 0 chr12 60752980 60753042 -83033413 - MLT1L LTR MaLR -406 209 148 831 254 27 14 chr12 60753042 60753262 -83033193 - MER58A DNA MER1_type 0 224 2 265 125 21 21 chr12 60753292 60753340 -83033115 - MLT1L LTR MaLR -342 48 1 250 57 0 0 chr12 60753356 60753391 -83033064 + L1PA13 LINE L1 6014 6048 -115 588 281 104 79 chr12 60753694 60754022 -83032433 - MLT1E2 LTR MaLR -288 336 1 540 274 27 87 chr12 60754047 60754327 -83032128 + HAL1 LINE L1 1406 1668 -839 2002 176 14 6 chr12 60754327 60754686 -83031769 - MLT1A1 LTR MaLR 0 365 4 540 274 27 87 chr12 60754686 60754704 -83031751 + HAL1 LINE L1 1668 1686 -821 799 113 20 33 chr12 60754705 60754856 -83031599 + L1PA13 LINE L1 6014 6162 -1 262 284 209 8 chr12 60754997 60755131 -83031324 + HAL1 LINE L1 1729 1889 -618 441 276 14 55 chr12 60755163 60755308 -83031147 + MIR SINE MIR 117 255 -7 281 333 27 18 chr12 60755431 60755542 -83030913 - L2 LINE L2 -1330 1984 1873 23 0 0 0 chr12 60755549 60755572 -83030883 + AT_rich Low_complexity Low_complexity 1 23 0 2207 75 0 52 chr12 60755946 60756254 -83030201 - AluSp SINE Alu -13 300 9 687 254 176 14 chr12 60756855 60757134 -83029321 + MER5C DNA MER1_type 1 324 0 307 323 61 12 chr12 60757151 60757315 -83029140 + MIR SINE MIR 25 196 -66 223 271 161 42 chr12 60759675 60759793 -83026662 - L2 LINE L2 -1 3312 3181 275 318 35 12 chr12 60760226 60760311 -83026144 - MIR SINE MIR -94 114 28 445 228 110 0 chr12 60760470 60760597 -83025858 - L1ME4a LINE L1 -16 6105 5965 182 167 0 24 chr12 60760688 60760730 -83025725 + (TA)n Simple_repeat Simple_repeat 2 42 0 41 48 0 0 chr12 60760775 60760837 -83025618 + AT_rich Low_complexity Low_complexity 1 62 0 341 275 138 0 chr12 60760897 60761006 -83025449 + MER63 DNA MER1_type 1 750 -312 284 276 40 0 chr12 60761007 60761083 -83025372 + MER63 DNA MER1_type 978 1056 -6 2124 122 3 0 chr12 60761294 60761589 -83024866 - AluSx SINE Alu -16 296 1 330 319 11 0 chr12 60761736 60761830 -83024625 + MIR SINE MIR 45 139 -69 1725 194 73 30 chr12 60761864 60762261 -83024194 - MER74C LTR ERVL 0 460 47 354 287 0 0 chr12 60763024 60763111 -83023344 - L2 LINE L2 -5 3308 3222 187 244 0 22 chr12 60763356 60763401 -83023054 - L2 LINE L2 -59 3213 3170 462 357 124 34 chr12 60763994 60764355 -83022100 + L2 LINE L2 2698 3124 -189 1886 119 0 4 chr12 60764355 60764632 -83021823 - AluSq SINE Alu -3 310 35 462 357 124 34 chr12 60764632 60764840 -83021615 + L2 LINE L2 3124 3312 -1 1181 228 46 53 chr12 60765171 60765566 -83020889 - L1ME2 LINE L1 -8 6156 5765 24 53 0 0 chr12 60766523 60766561 -83019894 + AT_rich Low_complexity Low_complexity 1 38 0 244 311 37 56 chr12 60766958 60767119 -83019336 + MLT1K LTR MaLR 189 346 -242 337 303 23 82 chr12 60768098 60768284 -83018171 - MIR3 SINE MIR -13 195 20 342 313 62 18 chr12 60770105 60770217 -83016238 + L2 LINE L2 3154 3270 -2 182 118 29 0 chr12 60770721 60770755 -83015700 + (TA)n Simple_repeat Simple_repeat 1 35 0 622 121 51 9 chr12 60770780 60770996 -83015459 + (TA)n Simple_repeat Simple_repeat 1 225 0 236 308 145 0 chr12 60771062 60771179 -83015276 + MIR SINE MIR 12 145 -117 12665 93 13 9 chr12 60771185 60773802 -83012653 + L1PA8 LINE L1 3544 6169 -3 369 195 0 0 chr12 60773833 60773910 -83012545 + MIR SINE MIR 137 213 -49 23 0 0 0 chr12 60774265 60774288 -83012167 + AT_rich Low_complexity Low_complexity 1 23 0 709 314 122 16 chr12 60774290 60774660 -83011795 - MLT1J LTR MaLR -100 411 3 1324 344 84 28 chr12 60775379 60776407 -83010048 + L2 LINE L2 1381 2465 -849 1244 238 139 109 chr12 60776476 60777001 -83009454 + MLT1F1 LTR MaLR 2 567 0 21 0 0 0 chr12 60777428 60777449 -83009006 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 60777655 60777684 -83008771 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 60778017 60778044 -83008411 + AT_rich Low_complexity Low_complexity 1 27 0 7223 208 48 9 chr12 60778924 60781563 -83004892 - L1MB7 LINE L1 -16 6168 3415 2396 235 32 3 chr12 60781553 60782182 -83004273 + L1 LINE L1 2329 2975 -3171 * 3043 142 32 0 chr12 60782209 60782708 -83003747 - Tigger4(Zombi) DNA MER2_type -1766 965 451 1794 192 14 6 chr12 60782826 60783186 -83003269 - L1PB4 LINE L1 -3 6153 5791 244 132 38 38 chr12 60783209 60783262 -83003193 + L1M3 LINE L1 5747 5799 -381 228 65 0 0 chr12 60783255 60783286 -83003169 + L1M2 LINE L1 5730 5760 -540 * 457 161 8 11 chr12 60783362 60783463 -83002992 - L1MC/D LINE L1 -402 5763 5687 1404 60 0 0 chr12 60783463 60783629 -83002826 + AluY SINE Alu 105 270 -41 2718 121 29 3 chr12 60783629 60784173 -83002282 - L1PB4 LINE L1 -458 5698 5144 942 193 19 5 chr12 60784168 60784380 -83002075 + L1PB4 LINE L1 4908 5122 -1024 * 2530 197 17 23 chr12 60784380 60784863 -83001592 - Tigger4(Zombi) DNA MER2_type -2251 480 1 3803 235 44 14 chr12 60784866 60785830 -83000625 - L1M4 LINE L1 -1949 4695 3692 2376 227 40 49 chr12 60785830 60786522 -82999933 - MER76 LTR ERV -2 686 1 3803 235 44 14 chr12 60786522 60786670 -82999785 - L1M4 LINE L1 -2952 3692 3550 699 226 0 0 chr12 60786677 60786814 -82999641 - L1PA16 LINE L1 -37 6129 5993 6726 172 10 1 chr12 60786827 60788615 -82997840 - L1P5 LINE L1 -374 5777 3976 2167 164 26 31 chr12 60788615 60789175 -82997280 - MLT2A2 LTR ERVL 0 554 1 816 171 0 7 chr12 60789175 60789327 -82997128 - L1M4 LINE L1 -2166 4478 4328 1790 42 0 0 chr12 60789413 60789627 -82996828 + L1P2 LINE L1 5399 5612 -542 * 3206 241 36 55 chr12 60789607 60789936 -82996519 - L1M4 LINE L1 -3124 3520 3186 2280 221 25 51 chr12 60789936 60790529 -82995926 + MER70B LTR ERVL 1 578 0 3206 241 36 55 chr12 60790529 60791640 -82994815 - L1M4 LINE L1 -3458 3186 2141 1816 58 0 0 chr12 60791636 60791859 -82994596 - L1PA7 LINE L1 -409 5745 5523 * 2980 72 2 5 chr12 60791859 60792257 -82994198 + L1PA7 LINE L1 5753 6153 -1 5406 224 55 60 chr12 60792257 60792492 -82993963 - L1M4 LINE L1 -4645 2001 1766 1089 191 90 93 chr12 60792492 60792858 -82993597 - MLT1A1 LTR MaLR 0 365 1 5406 224 55 60 chr12 60792858 60794653 -82991802 - L1M4 LINE L1 -4880 1766 5 33 66 0 0 chr12 60794727 60794788 -82991667 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 60795143 60795173 -82991282 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 60796668 60796690 -82989765 + AT_rich Low_complexity Low_complexity 1 22 0 1071 270 85 31 chr12 60796863 60797285 -82989170 + MLT1J2 LTR MaLR 1 445 -5 1364 230 71 26 chr12 60798520 60798899 -82987556 - MSTD LTR MaLR 0 396 1 5911 84 5 44 chr12 60799740 60800138 -82986317 - L1PA13 LINE L1 -13 6150 5738 199 54 54 0 chr12 60800138 60800175 -82986280 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5911 84 5 44 chr12 60800175 60800657 -82985798 - L1PA13 LINE L1 -425 5738 5305 * 12398 171 37 21 chr12 60800628 60802328 -82984127 - L1PA13 LINE L1 -1251 4895 3140 255 31 0 0 chr12 60802328 60802360 -82984095 + (TG)n Simple_repeat Simple_repeat 1 32 0 12398 171 37 21 chr12 60802360 60803194 -82983261 - L1PA13 LINE L1 -3006 3140 2321 341 131 0 0 chr12 60803195 60803256 -82983199 + L1PA13 LINE L1 2265 2325 -3821 33 25 0 0 chr12 60803606 60803646 -82982809 + AT_rich Low_complexity Low_complexity 1 40 0 778 317 27 5 chr12 60803715 60803936 -82982519 + MIR SINE MIR 30 255 -7 952 268 35 59 chr12 60804251 60804624 -82981831 + L2 LINE L2 2950 3313 0 231 255 0 0 chr12 60805568 60805619 -82980836 - MIR3 SINE MIR -5 203 153 193 362 11 21 chr12 60805650 60805744 -82980711 - L2 LINE L2 -1 3312 3220 24 53 0 0 chr12 60806323 60806361 -82980094 + AT_rich Low_complexity Low_complexity 1 38 0 304 306 72 33 chr12 60806621 60806801 -82979654 + L2 LINE L2 3120 3306 -7 1305 190 12 4 chr12 60807088 60807330 -82979125 - AluJo SINE Alu -32 280 37 411 295 54 8 chr12 60808777 60808906 -82977549 - MIR3 SINE MIR -33 175 41 300 292 42 21 chr12 60809872 60810016 -82976439 + L3b LINE CR1 1107 1253 -330 3000 139 17 8 chr12 60811841 60812496 -82973959 + L1P4 LINE L1 5119 5777 -388 24 53 0 0 chr12 60863430 60863468 -82922987 + AT_rich Low_complexity Low_complexity 1 38 0 244 311 37 56 chr12 60863865 60864026 -82922429 + MLT1K LTR MaLR 189 346 -242 337 303 23 82 chr12 60865005 60865191 -82921264 - MIR3 SINE MIR -13 195 20 342 313 62 18 chr12 60867012 60867124 -82919331 + L2 LINE L2 3154 3270 -2 182 118 29 0 chr12 60867628 60867662 -82918793 + (TA)n Simple_repeat Simple_repeat 1 35 0 622 121 51 9 chr12 60867687 60867903 -82918552 + (TA)n Simple_repeat Simple_repeat 1 225 0 236 308 145 0 chr12 60867969 60868086 -82918369 + MIR SINE MIR 12 145 -117 12665 93 13 9 chr12 60868092 60870709 -82915746 + L1PA8 LINE L1 3544 6169 -3 369 195 0 0 chr12 60870740 60870817 -82915638 + MIR SINE MIR 137 213 -49 23 0 0 0 chr12 60871172 60871195 -82915260 + AT_rich Low_complexity Low_complexity 1 23 0 709 314 122 16 chr12 60871197 60871567 -82914888 - MLT1J LTR MaLR -100 411 3 1324 344 84 28 chr12 60872286 60873314 -82913141 + L2 LINE L2 1381 2465 -849 1244 238 139 109 chr12 60873383 60873908 -82912547 + MLT1F1 LTR MaLR 2 567 0 21 0 0 0 chr12 60874335 60874356 -82912099 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 60874562 60874591 -82911864 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 60874924 60874951 -82911504 + AT_rich Low_complexity Low_complexity 1 27 0 7223 208 48 9 chr12 60875831 60878470 -82907985 - L1MB7 LINE L1 -16 6168 3415 2396 235 32 3 chr12 60878460 60879089 -82907366 + L1 LINE L1 2329 2975 -3171 * 3043 142 32 0 chr12 60879116 60879615 -82906840 - Tigger4(Zombi) DNA MER2_type -1766 965 451 1794 192 14 6 chr12 60879733 60880093 -82906362 - L1PB4 LINE L1 -3 6153 5791 244 132 38 38 chr12 60880116 60880169 -82906286 + L1M3 LINE L1 5747 5799 -381 238 172 141 16 chr12 60880161 60880225 -82906230 + L1P4 LINE L1 5729 5800 -365 * 457 161 8 11 chr12 60880269 60880370 -82906085 - L1MC/D LINE L1 -402 5763 5687 1404 60 0 0 chr12 60880370 60880536 -82905919 + AluY SINE Alu 105 270 -41 2718 121 29 3 chr12 60880536 60881080 -82905375 - L1PB4 LINE L1 -458 5698 5144 942 193 19 5 chr12 60881075 60881287 -82905168 + L1PB4 LINE L1 4908 5122 -1024 * 2530 197 17 23 chr12 60881287 60881770 -82904685 - Tigger4(Zombi) DNA MER2_type -2251 480 1 3822 236 43 14 chr12 60881773 60882738 -82903717 - L1M4 LINE L1 -1949 4695 3692 2376 227 40 49 chr12 60882738 60883430 -82903025 - MER76 LTR ERV -2 686 1 3822 236 43 14 chr12 60883430 60883578 -82902877 - L1M4 LINE L1 -2952 3692 3550 699 226 0 0 chr12 60883585 60883722 -82902733 - L1PA16 LINE L1 -37 6129 5993 6726 172 10 1 chr12 60883735 60885523 -82900932 - L1P5 LINE L1 -374 5777 3976 2167 164 26 31 chr12 60885523 60886083 -82900372 - MLT2A2 LTR ERVL 0 554 1 816 171 0 7 chr12 60886083 60886235 -82900220 - L1M4 LINE L1 -2166 4478 4328 1821 33 0 0 chr12 60886323 60886537 -82899918 + L1P2 LINE L1 5399 5612 -542 * 3206 241 36 55 chr12 60886517 60886846 -82899609 - L1M4 LINE L1 -3124 3520 3186 2280 221 25 51 chr12 60886846 60887439 -82899016 + MER70B LTR ERVL 1 578 0 3206 241 36 55 chr12 60887439 60888550 -82897905 - L1M4 LINE L1 -3458 3186 2141 1816 58 0 0 chr12 60888546 60888769 -82897686 - L1PA7 LINE L1 -409 5745 5523 * 3001 70 2 5 chr12 60888769 60889167 -82897288 + L1PA7 LINE L1 5753 6153 -1 5406 224 55 60 chr12 60889167 60889402 -82897053 - L1M4 LINE L1 -4645 2001 1766 1089 191 90 93 chr12 60889402 60889768 -82896687 - MLT1A1 LTR MaLR 0 365 1 5406 224 55 60 chr12 60889768 60891563 -82894892 - L1M4 LINE L1 -4880 1766 5 33 66 0 0 chr12 60891637 60891698 -82894757 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 60892053 60892083 -82894372 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 60893578 60893600 -82892855 + AT_rich Low_complexity Low_complexity 1 22 0 1071 270 85 31 chr12 60893773 60894195 -82892260 + MLT1J2 LTR MaLR 1 445 -5 1364 230 71 26 chr12 60895430 60895809 -82890646 - MSTD LTR MaLR 0 396 1 5911 84 5 44 chr12 60896650 60897048 -82889407 - L1PA13 LINE L1 -13 6150 5738 199 54 54 0 chr12 60897048 60897085 -82889370 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5911 84 5 44 chr12 60897085 60897567 -82888888 - L1PA13 LINE L1 -425 5738 5305 * 12398 171 37 21 chr12 60897538 60899238 -82887217 - L1PA13 LINE L1 -1251 4895 3140 255 31 0 0 chr12 60899238 60899270 -82887185 + (TG)n Simple_repeat Simple_repeat 1 32 0 12398 171 37 21 chr12 60899270 60900104 -82886351 - L1PA13 LINE L1 -3006 3140 2321 341 131 0 0 chr12 60900105 60900166 -82886289 + L1PA13 LINE L1 2265 2325 -3821 33 25 0 0 chr12 60900516 60900556 -82885899 + AT_rich Low_complexity Low_complexity 1 40 0 778 317 27 5 chr12 60900625 60900846 -82885609 + MIR SINE MIR 30 255 -7 952 268 35 59 chr12 60901161 60901534 -82884921 + L2 LINE L2 2950 3313 0 231 255 0 0 chr12 60902478 60902529 -82883926 - MIR3 SINE MIR -5 203 153 193 362 11 21 chr12 60902560 60902654 -82883801 - L2 LINE L2 -1 3312 3220 24 53 0 0 chr12 60903233 60903271 -82883184 + AT_rich Low_complexity Low_complexity 1 38 0 304 306 72 33 chr12 60903531 60903711 -82882744 + L2 LINE L2 3120 3306 -7 1305 190 12 4 chr12 60903998 60904240 -82882215 - AluJo SINE Alu -32 280 37 411 295 54 8 chr12 60905687 60905816 -82880639 - MIR3 SINE MIR -33 175 41 300 292 42 21 chr12 60906782 60906926 -82879529 + L3b LINE CR1 1107 1253 -330 3055 134 17 8 chr12 60908751 60909406 -82877049 + L1PA15 LINE L1 5119 5777 -388 270 56 0 0 chr12 60909440 60909476 -82876979 + (TG)n Simple_repeat Simple_repeat 2 37 0 243 106 106 0 chr12 60909477 60909524 -82876931 - MER73 LTR ERVL -564 80 29 270 265 24 0 chr12 60909545 60909628 -82876827 - L1MC4 LINE L1 -1339 6703 6619 * 2045 146 3 49 chr12 60909623 60909993 -82876462 + L1PA15 LINE L1 5792 6144 -21 301 308 96 0 chr12 60910840 60910944 -82875511 + L2 LINE L2 3151 3264 -8 3236 152 36 25 chr12 60911092 60911340 -82875115 - MER73 LTR ERVL 0 644 400 2076 134 0 0 chr12 60911340 60911639 -82874816 + AluSx SINE Alu 1 299 -13 3236 152 36 25 chr12 60911639 60912027 -82874428 - MER73 LTR ERVL -244 400 1 26 50 0 0 chr12 60912157 60912197 -82874258 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr12 60912247 60912280 -82874175 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 60912358 60912387 -82874068 + AT_rich Low_complexity Low_complexity 1 29 0 757 277 84 44 chr12 60912388 60913083 -82873372 - L1MC5 LINE L1 -86 7875 7261 588 252 46 118 chr12 60913103 60913663 -82872792 - L1MC4a LINE L1 -726 7235 6710 23 78 0 0 chr12 60913752 60913803 -82872652 + AT_rich Low_complexity Low_complexity 1 51 0 4099 164 26 15 chr12 60913808 60914620 -82871835 - L1MA4A LINE L1 0 6303 5483 372 161 167 81 chr12 60914799 60914973 -82871482 + MER69 DNA AcHobo 2331 2519 -7 626 296 93 59 chr12 60915795 60916274 -82870181 - MLT1J LTR MaLR 0 452 1 31 0 0 0 chr12 60917756 60917787 -82868668 + AT_rich Low_complexity Low_complexity 1 31 0 705 293 40 0 chr12 60918503 60918737 -82867718 + MIR SINE MIR 2 254 -8 1044 283 29 3 chr12 60919341 60919648 -82866807 - LTR16A LTR ERVL -118 332 18 6792 45 30 1 chr12 60919809 60920783 -82865672 + L1PA6 LINE L1 5150 6148 -6 592 289 106 18 chr12 60921508 60921781 -82864674 + LTR16C LTR ERVL 182 478 -13 204 40 0 0 chr12 60921800 60921825 -82864630 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 387 0 0 0 chr12 60921993 60922036 -82864419 + (TG)n Simple_repeat Simple_repeat 2 44 0 214 191 16 16 chr12 60923006 60923069 -82863386 + CT-rich Low_complexity Low_complexity 4 66 0 298 152 0 0 chr12 60923897 60923943 -82862512 - L2 LINE L2 -4 3309 3264 3554 189 29 57 chr12 60924403 60925239 -82861216 - L1MA10 LINE L1 0 6334 5523 * 4219 191 28 35 chr12 60925237 60925321 -82861134 - L1MA10 LINE L1 -1295 4851 4768 2456 128 5 5 chr12 60925321 60925695 -82860760 - THE1C LTR MaLR 0 375 2 9901 123 39 5 chr12 60925696 60927223 -82859232 - THE1C-int LTR MaLR 0 1580 1 2402 129 14 3 chr12 60927223 60927594 -82858861 - THE1C LTR MaLR 0 375 1 4219 191 28 35 chr12 60927594 60927659 -82858796 - L1MA10 LINE L1 -1377 4769 4705 1376 184 56 28 chr12 60927659 60927947 -82858508 - AluJo SINE Alu -16 296 1 4219 191 28 35 chr12 60927947 60928015 -82858440 - L1MA10 LINE L1 -1441 4705 4638 6265 71 14 51 chr12 60928015 60929324 -82857131 + L1PA10 LINE L1 4894 6168 0 4219 191 28 35 chr12 60929324 60930093 -82856362 - L1MA10 LINE L1 -1508 4638 3867 499 164 77 0 chr12 60930096 60930200 -82856255 - L1MB1 LINE L1 -126 6042 5931 26 88 0 0 chr12 60930299 60930367 -82856088 + AT_rich Low_complexity Low_complexity 1 68 0 27 49 0 0 chr12 60931068 60931109 -82855346 + AT_rich Low_complexity Low_complexity 1 41 0 27 81 0 0 chr12 60932325 60932387 -82854068 + AT_rich Low_complexity Low_complexity 1 62 0 195 42 0 0 chr12 60933276 60933300 -82853155 + (TA)n Simple_repeat Simple_repeat 1 24 0 234 279 0 76 chr12 60933476 60933555 -82852900 - MER91B DNA MER1_type -116 74 2 379 217 36 0 chr12 60936635 60936718 -82849737 + L2 LINE L2 3187 3272 0 2262 249 143 18 chr12 60936775 60937571 -82848884 + L2 LINE L2 2009 2904 -410 678 247 200 4 chr12 60937566 60937801 -82848654 + L2 LINE L2 3033 3313 0 * 350 132 0 73 chr12 60937814 60937882 -82848573 - L2 LINE L2 0 3313 3251 2200 147 8 8 chr12 60938275 60938643 -82847812 - L1PB4 LINE L1 0 6156 5789 308 209 11 0 chr12 60938679 60938770 -82847685 + (TA)n Simple_repeat Simple_repeat 2 93 0 1939 133 56 3 chr12 60938788 60939110 -82847345 - L1PB4 LINE L1 -379 5777 5439 1630 181 35 0 chr12 60939110 60939398 -82847057 - AluJo SINE Alu -14 298 1 401 281 0 33 chr12 60939742 60939863 -82846592 + L2 LINE L2 3197 3313 0 28 0 0 0 chr12 60939977 60940005 -82846450 + AT_rich Low_complexity Low_complexity 1 28 0 673 209 15 0 chr12 60942484 60942618 -82843837 + LTR52 LTR ERVL 284 419 -2 1052 205 140 7 chr12 60942632 60942925 -82843530 - L1MC4 LINE L1 -234 7808 7477 230 341 79 24 chr12 60943437 60943601 -82842854 + L2 LINE L2 1661 1833 -1481 221 305 76 59 chr12 60944364 60944482 -82841973 - L2 LINE L2 -1 3312 3193 699 270 10 73 chr12 60944580 60944880 -82841575 - MER97c DNA MER1_type? 0 1090 810 21 0 0 0 chr12 60946017 60946038 -82840417 + AT_rich Low_complexity Low_complexity 1 21 0 1876 184 30 30 chr12 60946127 60946684 -82839771 + MLT2A2 LTR ERVL 1 554 0 335 69 29 78 chr12 60946876 60946978 -82839477 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 180 0 0 0 chr12 60948984 60949004 -82837451 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 594 201 74 5 chr12 60949107 60949296 -82837159 - MER97b DNA MER1_type? -194 859 658 244 294 165 0 chr12 60949689 60949774 -82836681 - L2 LINE L2 -6 3266 3168 676 121 0 0 chr12 60950025 60950124 -82836331 + AluSg SINE Alu 1 99 -211 22 0 0 0 chr12 60950412 60950434 -82836021 + AT_rich Low_complexity Low_complexity 1 22 0 188 255 94 75 chr12 60951297 60951403 -82835052 + MIR SINE MIR 141 248 -14 232 245 0 0 chr12 60951412 60951461 -82834994 + (CAT)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 60953020 60953042 -82833413 + AT_rich Low_complexity Low_complexity 1 22 0 1275 63 6 6 chr12 60953057 60953231 -82833224 + L1PA5 LINE L1 5980 6153 -1 2187 253 56 18 chr12 60953384 60954108 -82832347 - L1ME1 LINE L1 -17 6149 5425 365 267 82 82 chr12 60954334 60954615 -82831840 + L1MDb LINE L1 1006 1289 -5107 355 285 6 101 chr12 60955017 60955196 -82831259 + MIR SINE MIR 86 247 -15 192 318 61 0 chr12 60956429 60956495 -82829960 - L2 LINE L2 -18 3295 3226 194 267 0 22 chr12 60956574 60956619 -82829836 + MER5B DNA MER1_type 64 107 -71 332 302 42 10 chr12 60956650 60956746 -82829709 + L2 LINE L2 3170 3268 -4 * 1084 295 53 37 chr12 60956739 60957275 -82829180 - L2 LINE L2 0 3313 2778 38241 84 7 10 chr12 60958298 60964465 -82821990 + L1PA6 LINE L1 11 6154 0 22 0 0 0 chr12 60964466 60964488 -82821967 + AT_rich Low_complexity Low_complexity 1 22 0 258 32 0 0 chr12 60964708 60964739 -82821716 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 298 13 26 chr12 60964957 60965108 -82821347 + GA-rich Low_complexity Low_complexity 2 150 0 21 82 0 0 chr12 60965655 60965704 -82820751 + AT_rich Low_complexity Low_complexity 1 49 0 10403 134 23 21 chr12 60965723 60967463 -82818992 - L1P LINE L1 -4393 1753 11 34 55 0 0 chr12 60967801 60967856 -82818599 + AT_rich Low_complexity Low_complexity 1 55 0 2221 119 0 0 chr12 60968198 60968492 -82817963 + AluSg SINE Alu 2 295 -15 2363 77 3 0 chr12 60968592 60968891 -82817564 + AluY SINE Alu 1 300 -11 22 0 0 0 chr12 60969514 60969536 -82816919 + AT_rich Low_complexity Low_complexity 1 22 0 571 148 50 0 chr12 60969541 60969642 -82816813 - L1MA4 LINE L1 -1233 4913 4808 5691 143 28 10 chr12 60969642 60971021 -82815434 + L1MA4 LINE L1 4898 6300 0 896 241 85 44 chr12 60971386 60971796 -82814659 - L1MC5 LINE L1 -625 7336 6910 237 204 37 0 chr12 60971794 60971848 -82814607 + L1MC5 LINE L1 7378 7433 -528 * 5422 135 13 14 chr12 60971870 60972389 -82814066 - L1PA15 LINE L1 -2 6163 5645 1870 119 80 44 chr12 60972389 60972751 -82813704 - THE1C LTR MaLR 0 375 1 5422 135 13 14 chr12 60972751 60972845 -82813610 - L1PA15 LINE L1 -520 5645 5552 4366 173 60 45 chr12 60972845 60973901 -82812554 - MER11C LTR ERVK 0 1071 1 5422 135 13 14 chr12 60973901 60974989 -82811466 - L1PA15 LINE L1 -613 5552 4470 322 265 147 14 chr12 60975058 60975269 -82811186 + L1MC5 LINE L1 7474 7712 -249 2366 103 3 0 chr12 60975454 60975765 -82810690 - AluSx SINE Alu 0 312 1 1378 255 101 47 chr12 60975770 60975904 -82810551 - HAL1 LINE L1 -417 2090 1965 2316 156 15 0 chr12 60975904 60976301 -82810154 + MER57A LTR ERV1 1 403 0 1378 255 101 47 chr12 60976301 60976763 -82809692 - HAL1 LINE L1 -542 1965 1462 620 317 32 69 chr12 60976960 60977021 -82809434 - HAL1 LINE L1 -1608 899 837 1749 157 11 0 chr12 60977021 60977322 -82809133 - AluSq SINE Alu 0 304 1 620 317 32 69 chr12 60977322 60977634 -82808821 - HAL1 LINE L1 -1670 837 539 2022 117 0 7 chr12 60977684 60977992 -82808463 - AluSg SINE Alu 0 306 1 28 48 0 0 chr12 60979335 60979377 -82807078 + AT_rich Low_complexity Low_complexity 1 42 0 308 259 25 24 chr12 60979819 60979945 -82806510 - LTR33A LTR ERVL 0 523 449 336 111 0 0 chr12 60980323 60980377 -82806078 + (TC)n Simple_repeat Simple_repeat 1 54 0 203 402 76 24 chr12 60981301 60981550 -82804905 - L2 LINE L2 -13 3259 2998 561 345 171 21 chr12 60981635 60982549 -82803906 - L2 LINE L2 -550 2764 1665 204 40 0 0 chr12 60982549 60982574 -82803881 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 561 345 171 21 chr12 60982574 60982731 -82803724 - L2 LINE L2 -1649 1665 1533 975 302 69 16 chr12 60984623 60985186 -82801269 + L1MC4a LINE L1 5379 5971 -1837 25 0 0 0 chr12 60985341 60985366 -82801089 + AT_rich Low_complexity Low_complexity 1 25 0 286 341 0 0 chr12 60985403 60985485 -82800970 + L2 LINE L2 3186 3267 -5 755 253 11 11 chr12 60985989 60986167 -82800288 - MER5B DNA MER1_type 0 178 1 400 309 59 36 chr12 60986556 60986776 -82799679 + L1ME3A LINE L1 5727 5951 -219 10325 225 22 45 chr12 60987793 60990625 -82795830 + L1M2 LINE L1 2 2736 -4112 7602 29 0 0 chr12 60990625 60991565 -82794890 + L1PA4 LINE L1 5213 6152 -3 10325 225 22 45 chr12 60991565 60992227 -82794228 + L1M2 LINE L1 2736 3412 -3436 182 62 31 0 chr12 60992249 60992281 -82794174 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3048 175 18 5 chr12 60992281 60993011 -82793444 + L1MA4A LINE L1 5481 6280 -23 21 0 0 0 chr12 60993017 60993038 -82793417 + AT_rich Low_complexity Low_complexity 1 21 0 275 398 63 49 chr12 60993246 60993500 -82792955 - L2 LINE L2 -16 3256 3007 2317 62 48 0 chr12 60993500 60993789 -82792666 + AluY SINE Alu 1 303 -8 275 398 63 49 chr12 60993789 60993801 -82792654 - L2 LINE L2 -265 3007 2997 2360 89 0 13 chr12 60993801 60994115 -82792340 + AluY SINE Alu 1 310 -1 275 398 63 49 chr12 60994115 60994294 -82792161 - L2 LINE L2 -275 2997 2804 275 344 158 5 chr12 60994487 60994702 -82791753 - L2 LINE L2 -517 2797 2550 3491 154 57 0 chr12 60996800 60997383 -82789072 + LTR31 LTR ERV1 1 616 -3 185 255 0 20 chr12 60997481 60997532 -82788923 - L3b LINE CR1 -341 1242 1193 322 320 0 10 chr12 60997701 60997804 -82788651 + MIR SINE MIR 28 129 -133 1813 236 31 49 chr12 60997804 60998375 -82788080 + MER74B LTR ERVL 52 612 -10 1988 142 0 4 chr12 60998663 60998944 -82787511 + AluSx SINE Alu 3 282 -30 378 0 0 0 chr12 60998948 60998990 -82787465 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 218 229 0 21 chr12 60999699 60999747 -82786708 - MER5A DNA MER1_type 0 189 143 5147 186 68 75 chr12 60999748 61001875 -82784580 + L1MDa LINE L1 1 2257 -4283 2290 98 0 7 chr12 61001878 61002184 -82784271 + AluY SINE Alu 1 304 -7 451 197 0 0 chr12 61002185 61002256 -82784199 - MER5A DNA MER1_type -56 133 63 432 42 0 56 chr12 61002271 61002283 -82784172 + L1P LINE L1 5315 5326 -805 2466 51 3 0 chr12 61002283 61002594 -82783861 - L1PA8 LINE L1 0 6172 5861 432 42 0 56 chr12 61002594 61002653 -82783802 + L1P LINE L1 5326 5382 -749 381 197 28 0 chr12 61002653 61002724 -82783731 - MER5A DNA MER1_type -113 76 4 334 243 85 90 chr12 61002994 61003171 -82783284 + MER5B DNA MER1_type 1 176 -2 478 295 84 37 chr12 61003338 61003528 -82782927 - MIR SINE MIR -13 249 51 2850 7 0 0 chr12 61004023 61004333 -82782122 + AluYa5 SINE Alu 1 310 -1 211 156 0 44 chr12 61004857 61004902 -82781553 + (TAG)n Simple_repeat Simple_repeat 2 44 0 245 283 35 19 chr12 61005464 61005561 -82780894 + MIR SINE MIR 52 148 -60 2270 76 7 0 chr12 61005685 61005976 -82780479 + AluSc SINE Alu 3 295 -14 2129 189 19 17 chr12 61006637 61006700 -82779755 - MSTB LTR MaLR -6 420 359 2358 80 10 0 chr12 61006700 61006999 -82779456 + AluSp SINE Alu 1 302 -11 2129 189 19 17 chr12 61006999 61007354 -82779101 - MSTB LTR MaLR -67 359 1 22 56 0 0 chr12 61007583 61007619 -82778836 + AT_rich Low_complexity Low_complexity 1 36 0 2434 97 33 22 chr12 61007838 61008198 -82778257 + THE1B LTR MaLR 1 364 0 423 310 65 0 chr12 61008198 61008353 -82778102 - MIR SINE MIR -60 202 38 1234 50 0 6 chr12 61008456 61008653 -82777802 + L1PA7 LINE L1 5973 6168 0 285 228 20 19 chr12 61009129 61009291 -82777164 + GA-rich Low_complexity Low_complexity 1 162 0 382 278 93 0 chr12 61009415 61009523 -82776932 + L2 LINE L2 3195 3312 -1 507 196 39 10 chr12 61010010 61010112 -82776343 - MIR SINE MIR -2 260 156 550 298 53 0 chr12 61010199 61010387 -82776068 + MER58A DNA MER1_type 27 224 0 390 320 41 7 chr12 61010579 61010726 -82775729 + MIR3 SINE MIR 32 183 -25 7191 180 127 16 chr12 61011907 61013486 -82772969 + MER52A LTR ERV1 1 1755 0 1567 101 0 0 chr12 61013703 61013922 -82772533 + THE1A LTR MaLR 1 219 -136 9602 113 17 11 chr12 61013923 61015413 -82771042 + THE1A-int LTR MaLR 82 1580 0 2764 87 0 0 chr12 61015413 61015768 -82770687 + THE1A LTR MaLR 1 355 0 497 298 75 24 chr12 61017358 61017731 -82768724 - L1ME4a LINE L1 -34 6087 5696 186 244 103 13 chr12 61019150 61019228 -82767227 - MIR3 SINE MIR -27 181 97 272 327 121 12 chr12 61021022 61021187 -82765268 - MIR3 SINE MIR -21 187 5 424 235 0 31 chr12 61021233 61021331 -82765124 + MIR3 SINE MIR 108 202 -6 304 310 115 40 chr12 61022686 61022886 -82763569 + MIR SINE MIR 48 262 0 1962 147 3 11 chr12 61023206 61023525 -82762930 + AluSx SINE Alu 1 317 0 299 284 111 68 chr12 61023756 61023918 -82762537 + L2 LINE L2 3007 3175 -97 21 0 0 0 chr12 61024354 61024375 -82762080 + AT_rich Low_complexity Low_complexity 1 21 0 235 260 57 102 chr12 61024506 61024683 -82761772 - L2 LINE L2 -2 3270 3102 455 293 153 0 chr12 61024745 61024902 -82761553 + MER5A DNA MER1_type 9 189 0 357 241 107 37 chr12 61024940 61025090 -82761365 + MER5B DNA MER1_type 20 189 0 214 244 0 0 chr12 61025326 61025371 -82761084 - L2 LINE L2 -8 3305 3261 261 320 97 0 chr12 61025386 61025489 -82760966 - L2 LINE L2 0 3313 3201 693 243 53 70 chr12 61025794 61026094 -82760361 - MLT1I LTR MaLR -15 394 100 414 0 0 0 chr12 61030894 61030940 -82755515 + (TG)n Simple_repeat Simple_repeat 2 47 0 2284 67 0 0 chr12 61030940 61031224 -82755231 - AluY SINE Alu -27 284 1 185 271 21 0 chr12 61031356 61031404 -82755051 - L2 LINE L2 0 3272 3224 * 441 248 0 26 chr12 61031373 61031490 -82754965 - MIR SINE MIR -12 250 137 2132 164 13 29 chr12 61031506 61031962 -82754493 - L1MA7 LINE L1 -6 6173 5725 10441 223 57 36 chr12 61031962 61036469 -82749986 - L1MA7 LINE L1 -1510 4524 302 286 331 74 7 chr12 61036728 61036876 -82749579 - L1M3a LINE L1 -5251 704 547 1179 328 11 37 chr12 61037045 61037506 -82748949 - L1M3a LINE L1 -5504 451 3 513 338 0 0 chr12 61037527 61037663 -82748792 - MIR SINE MIR -126 136 1 430 304 45 83 chr12 61037875 61038141 -82748314 - L2 LINE L2 -69 3203 2948 218 361 32 19 chr12 61038201 61038359 -82748096 - L2 LINE L2 -448 2866 2707 422 222 185 0 chr12 61038988 61039096 -82747359 - L2 LINE L2 0 3313 3186 201 322 69 11 chr12 61039330 61039417 -82747038 + MIR SINE MIR 60 151 -57 693 274 55 53 chr12 61039536 61039566 -82746889 + HsTC2 DNA Tc2 530 558 -1340 918 286 14 0 chr12 61039566 61039786 -82746669 - MER58A DNA MER1_type -1 223 1 693 274 55 53 chr12 61039786 61040116 -82746339 + HsTC2 DNA Tc2 558 891 -1007 2146 90 4 0 chr12 61040129 61040406 -82746049 - AluSc SINE Alu -9 300 23 519 284 138 36 chr12 61040968 61041193 -82745262 - MIR SINE MIR -2 260 13 654 332 44 0 chr12 61041436 61041641 -82744814 + MIR SINE MIR 21 234 -28 22 35 0 0 chr12 61042820 61042849 -82743606 + AT_rich Low_complexity Low_complexity 1 29 0 227 111 0 44 chr12 61042911 61042956 -82743499 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1744 194 22 78 chr12 61043052 61043516 -82742939 + MSTB2 LTR MaLR 20 457 0 196 226 48 16 chr12 61044028 61044090 -82742365 - L2 LINE L2 -264 3008 2945 278 136 0 0 chr12 61045049 61045093 -82741362 - L1MA3 LINE L1 0 6305 6262 396 301 34 30 chr12 61045254 61045485 -82740970 - LTR16A1 LTR ERVL -22 469 201 213 245 20 88 chr12 61045644 61045746 -82740709 + GA-rich Low_complexity Low_complexity 1 95 0 328 256 104 25 chr12 61047008 61047272 -82739183 - L1MC/D LINE L1 -330 5791 5609 204 67 0 0 chr12 61047272 61047302 -82739153 + (TTTAA)n Simple_repeat Simple_repeat 2 31 0 328 256 104 25 chr12 61047302 61047319 -82739136 - L1MC/D LINE L1 -512 5609 5595 1885 129 48 36 chr12 61047955 61048287 -82738168 - MSTB1 LTR MaLR 0 432 97 1397 129 9 9 chr12 61048289 61048499 -82737956 - THE1A LTR MaLR -1 354 145 227 404 0 0 chr12 61048593 61048707 -82737748 - L1M4 LINE L1 -2012 4134 4021 321 82 0 0 chr12 61049047 61049096 -82737359 + (GA)n Simple_repeat Simple_repeat 2 50 0 362 247 99 19 chr12 61049637 61049799 -82736656 + MIR SINE MIR 88 262 0 314 282 154 34 chr12 61049817 61049966 -82736489 - MER5B DNA MER1_type -1 177 11 267 31 0 0 chr12 61050044 61050076 -82736379 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 575 317 108 42 chr12 61050146 61050748 -82735707 - L3 LINE CR1 -309 1268 588 198 0 0 0 chr12 61050753 61050775 -82735680 + (TTG)n Simple_repeat Simple_repeat 3 24 0 536 290 32 83 chr12 61050791 61051043 -82735412 + MIR SINE MIR 19 257 -5 432 347 6 6 chr12 61051076 61051246 -82735209 + MIR SINE MIR 67 236 -26 311 281 133 16 chr12 61052225 61052353 -82734102 + MER5A DNA MER1_type 43 185 -4 237 379 49 24 chr12 61052349 61052701 -82733754 + L2 LINE L2 2665 3024 -248 * 330 316 86 0 chr12 61052761 61052878 -82733577 - L2 LINE L2 0 3313 3187 183 352 0 28 chr12 61052918 61052989 -82733466 + L2 LINE L2 3096 3164 -108 184 237 134 52 chr12 61053535 61053632 -82732823 - L3 LINE CR1 -611 966 862 257 298 0 0 chr12 61053891 61053948 -82732507 + L2 LINE L2 3247 3303 -10 200 208 0 21 chr12 61054363 61054411 -82732044 + CT-rich Low_complexity Low_complexity 6 52 0 2126 113 0 3 chr12 61055118 61055433 -82731022 + AluSx SINE Alu 1 314 0 250 284 88 14 chr12 61055434 61055582 -82730873 + MIR SINE MIR 79 237 -25 1121 298 115 24 chr12 61055660 61056175 -82730280 - L2 LINE L2 0 3313 2685 2346 60 0 3 chr12 61056175 61056460 -82729995 - AluY SINE Alu -11 300 17 1121 298 115 24 chr12 61056460 61056719 -82729736 - L2 LINE L2 -628 2685 2451 575 254 7 7 chr12 61057112 61057250 -82729205 + MIR SINE MIR 47 184 -78 2707 152 33 2 chr12 61057682 61058135 -82728320 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr12 61058700 61058726 -82727729 + AT_rich Low_complexity Low_complexity 1 26 0 418 291 56 97 chr12 61059273 61059592 -82726863 - L2 LINE L2 0 3272 2967 672 48 0 0 chr12 61060212 61060296 -82726159 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 2224 87 0 0 chr12 61060299 61060574 -82725881 - AluSc SINE Alu -32 277 3 1256 275 144 13 chr12 61060786 61061616 -82724839 - L2 LINE L2 -3 3310 2373 29 0 0 0 chr12 61061803 61061832 -82724623 + AT_rich Low_complexity Low_complexity 1 29 0 183 358 63 0 chr12 61062631 61062726 -82723729 + MIR SINE MIR 156 256 -6 619 189 7 7 chr12 61062901 61063054 -82723401 + GA-rich Low_complexity Low_complexity 2 154 0 528 335 156 18 chr12 61063172 61063577 -82722878 - L1M4 LINE L1 -2945 3201 2853 3238 55 2 5 chr12 61063577 61063999 -82722456 - L1PA7 LINE L1 0 6154 5734 528 335 156 18 chr12 61063999 61064441 -82722014 - L1M4 LINE L1 -3293 2853 2237 2511 74 0 0 chr12 61064931 61065242 -82721213 - AluY SINE Alu 0 311 1 368 266 202 14 chr12 61065290 61065508 -82720947 - HAL1 LINE L1 -878 1629 1371 2279 74 3 0 chr12 61066063 61066346 -82720109 - AluY SINE Alu 0 311 28 314 288 115 14 chr12 61066676 61066815 -82719640 + L2 LINE L2 3159 3311 -2 309 270 40 10 chr12 61068365 61068465 -82717990 + MLT1J2 LTR MaLR 1 103 -347 638 258 131 49 chr12 61068507 61068751 -82717704 + MLT1J2 LTR MaLR 181 444 -6 470 283 33 57 chr12 61069023 61069235 -82717220 + L2 LINE L2 3107 3313 0 249 219 89 96 chr12 61069556 61069702 -82716753 + Charlie7 DNA MER1_type 13 157 -2455 464 357 77 3 chr12 61069977 61070288 -82716167 + L2 LINE L2 2514 2847 -467 1215 185 46 207 chr12 61070305 61071087 -82715368 - L1MA9 LINE L1 -38 6274 5619 195 356 51 34 chr12 61071088 61071265 -82715190 + L2 LINE L2 2842 3021 -292 2105 78 3 3 chr12 61071600 61071914 -82714541 + AluY SINE Alu 1 314 0 26671 33 1 0 chr12 61073042 61077054 -82709401 + L1PA3 LINE L1 2138 6152 -3 456 345 25 10 chr12 61077570 61077767 -82708688 + MIR SINE MIR 3 202 -60 257 298 0 0 chr12 61078170 61078227 -82708228 + L2 LINE L2 3247 3303 -10 200 208 0 21 chr12 61078641 61078689 -82707766 + CT-rich Low_complexity Low_complexity 6 52 0 2126 113 0 3 chr12 61079396 61079711 -82706744 + AluSx SINE Alu 1 314 0 250 284 88 14 chr12 61079712 61079860 -82706595 + MIR SINE MIR 79 237 -25 1092 319 149 4 chr12 61079938 61080443 -82706012 - L2 LINE L2 0 3313 2720 2353 77 10 0 chr12 61080452 61080749 -82705706 - AluY SINE Alu -11 300 1 368 266 202 14 chr12 61080797 61081015 -82705440 - HAL1 LINE L1 -878 1629 1371 2295 74 3 0 chr12 61081570 61081853 -82704602 - AluY SINE Alu 0 311 28 314 288 115 14 chr12 61082183 61082322 -82704133 + L2 LINE L2 3159 3311 -2 275 270 40 10 chr12 61083873 61083973 -82702482 + MLT1J2 LTR MaLR 1 103 -347 569 266 149 14 chr12 61084045 61084259 -82702196 + MLT1J2 LTR MaLR 202 444 -6 471 283 33 57 chr12 61084531 61084743 -82701712 + L2 LINE L2 3107 3313 0 476 357 77 3 chr12 61085485 61085796 -82700659 + L2 LINE L2 2514 2847 -467 1325 223 57 59 chr12 61085813 61086307 -82700148 - L1MA9 LINE L1 -38 6274 5782 327 315 0 0 chr12 61086331 61086420 -82700035 - L1MC4 LINE L1 -1340 6702 6614 816 180 37 0 chr12 61086425 61086586 -82699869 - L1MA9 LINE L1 -519 5793 5627 216 331 20 40 chr12 61086586 61086734 -82699721 + L2 LINE L2 2832 2976 -338 220 343 107 37 chr12 61086878 61087094 -82699361 - MIR SINE MIR -11 251 21 191 237 0 0 chr12 61087251 61087289 -82699166 - L2 LINE L2 -22 3291 3254 284 198 149 25 chr12 61088072 61088193 -82698262 - L2 LINE L2 -63 3250 3115 231 292 75 17 chr12 61088276 61088396 -82698059 + MIR SINE MIR 119 245 -17 1034 49 63 7 chr12 61089219 61089362 -82697093 - L1PA8 LINE L1 -1 6171 6021 2350 107 0 3 chr12 61089724 61090034 -82696421 - AluSg SINE Alu -1 309 1 232 268 21 103 chr12 61092097 61092194 -82694261 - MIR SINE MIR -78 130 42 213 333 0 0 chr12 61092462 61092528 -82693927 + CT-rich Low_complexity Low_complexity 3 68 0 211 309 62 0 chr12 61093259 61093340 -82693115 + L2 LINE L2 3187 3272 0 1722 203 3 42 chr12 61094789 61095169 -82691286 - MLT1A1 LTR MaLR 0 365 1 188 173 39 39 chr12 61095221 61095273 -82691182 - MIR SINE MIR -140 122 71 2343 227 32 43 chr12 61095742 61096373 -82690082 - MLT1E3 LTR MaLR 0 624 1 3094 149 2 2 chr12 61096536 61097020 -82689435 - MER1A DNA MER1_type 0 529 46 234 191 0 0 chr12 61097036 61097083 -82689372 + Charlie3 DNA MER1_type 1 47 -2663 2464 168 9 16 chr12 61097236 61097671 -82688784 - MSTB1 LTR MaLR 0 432 1 537 309 0 0 chr12 61098086 61098222 -82688233 + MIR SINE MIR 9 144 -118 1066 173 30 38 chr12 61098236 61098384 -82688071 + MER46A DNA MER2_type 2 149 -2582 1039 266 4 0 chr12 61098384 61098621 -82687834 + MER8 DNA MER2_type 2 239 0 1066 173 30 38 chr12 61098621 61098709 -82687746 + MER46A DNA MER2_type 149 236 0 185 233 33 17 chr12 61098709 61098769 -82687686 + MIR SINE MIR 156 216 -46 2620 240 56 124 chr12 61099924 61101235 -82685220 - MLT1E3-int LTR MaLR -148 1223 3 1536 226 58 35 chr12 61101235 61101654 -82684801 - MLT1E3 LTR MaLR -11 494 61 411 21 0 0 chr12 61101654 61101702 -82684753 + (CATAT)n Simple_repeat Simple_repeat 2 49 0 1536 226 58 35 chr12 61101702 61101765 -82684690 - MLT1E3 LTR MaLR -444 61 1 316 272 132 0 chr12 61101767 61101881 -82684574 - MIR SINE MIR -71 191 63 277 247 75 86 chr12 61102878 61102957 -82683498 - L1ME4a LINE L1 -225 5896 5818 2154 110 0 0 chr12 61102957 61103247 -82683208 - AluSc SINE Alu 0 309 20 277 247 75 86 chr12 61103247 61103341 -82683114 - L1ME4a LINE L1 -303 5818 5725 282 159 0 0 chr12 61104583 61104627 -82681828 + MIR SINE MIR 210 253 -9 5758 100 18 31 chr12 61104631 61105101 -82681354 + L1PA10 LINE L1 4906 5381 -787 2187 101 0 7 chr12 61105101 61105389 -82681066 + AluSc SINE Alu 23 308 -1 5758 100 18 31 chr12 61105389 61106183 -82680272 + L1PA10 LINE L1 5381 6152 -16 346 337 160 0 chr12 61107414 61107583 -82678872 + MIR3 SINE MIR 4 199 -9 190 387 38 0 chr12 61108961 61109067 -82677388 + MIR SINE MIR 119 228 -34 1435 139 117 32 chr12 61109362 61109643 -82676812 - AluJo SINE Alu -7 305 1 203 350 10 19 chr12 61109942 61110045 -82676410 + MIR SINE MIR 107 208 -54 229 335 73 28 chr12 61110165 61110413 -82676042 - MLT1J LTR MaLR 0 511 253 1761 183 46 50 chr12 61111222 61111268 -82675187 - MLT2D LTR ERVL 0 414 369 366 61 0 0 chr12 61111268 61111317 -82675138 + (TG)n Simple_repeat Simple_repeat 1 49 0 1761 183 46 50 chr12 61111317 61111686 -82674769 - MLT2D LTR ERVL -45 369 1 580 243 228 32 chr12 61111977 61112380 -82674075 + MLT1H LTR MaLR 60 541 -8 398 273 91 47 chr12 61112384 61112642 -82673813 - L1ME3A LINE L1 -332 5830 5567 301 257 20 40 chr12 61112698 61112799 -82673656 + L1ME4a LINE L1 5322 5420 -2388 2089 120 0 49 chr12 61112825 61113151 -82673304 - AluSg SINE Alu 0 310 1 415 284 31 6 chr12 61113284 61113446 -82673009 + L1ME4a LINE L1 5485 5650 -471 2121 114 0 13 chr12 61114021 61114319 -82672136 - AluSq SINE Alu 0 313 20 351 236 48 120 chr12 61114627 61114877 -82671578 + L1ME4a LINE L1 5878 6109 -12 247 126 19 194 chr12 61116432 61116535 -82669920 - MER5C DNA MER1_type -1 323 239 * 298 273 34 11 chr12 61116522 61116610 -82669845 - MER5C DNA MER1_type -214 110 21 560 287 97 6 chr12 61116917 61117187 -82669268 - MER110 LTR ERV1 0 491 227 249 234 135 45 chr12 61117322 61117433 -82669022 - MER110A LTR ERV1 -345 123 3 1814 141 7 4 chr12 61117697 61117973 -82668482 - AluSx SINE Alu -2 310 34 3413 62 5 0 chr12 61118442 61118878 -82667577 + L1PA7 LINE L1 5706 6143 -11 243 0 0 0 chr12 61118886 61118913 -82667542 + (CATA)n Simple_repeat Simple_repeat 2 28 0 37 0 0 0 chr12 61119700 61119737 -82666718 + AT_rich Low_complexity Low_complexity 1 37 0 321 100 0 0 chr12 61120518 61120568 -82665887 + (GA)n Simple_repeat Simple_repeat 1 50 0 3414 169 48 39 chr12 61121265 61122033 -82664422 + LTR1 LTR ERV1 11 785 0 652 318 127 22 chr12 61122340 61122702 -82663753 + L2 LINE L2 2906 3305 -8 290 252 52 7 chr12 61122753 61122888 -82663567 - L1ME4a LINE L1 0 6121 5981 3956 161 46 54 chr12 61122983 61123964 -82662491 + L1MB1 LINE L1 5187 6163 -5 1091 235 65 26 chr12 61123982 61124323 -82662132 - MLT1C LTR MaLR -51 416 63 2254 72 48 3 chr12 61125175 61125468 -82660987 + AluY SINE Alu 1 306 -5 473 370 25 38 chr12 61126848 61127405 -82659050 + ERVL LTR ERVL 4776 5325 -439 475 266 103 34 chr12 61127677 61127942 -82658513 + LTR16A LTR ERVL 133 408 -42 345 352 41 0 chr12 61127978 61128123 -82658332 + MIR SINE MIR 106 256 -6 1073 252 28 3 chr12 61128973 61129263 -82657192 + L1MC4 LINE L1 6772 7068 -974 798 250 29 58 chr12 61129284 61129696 -82656759 - L1M4 LINE L1 -1070 5076 4677 299 320 86 17 chr12 61129664 61129898 -82656557 - L1ME LINE L1 -5710 360 111 * 228 313 0 61 chr12 61131783 61131882 -82654573 + MIR SINE MIR 110 202 -60 1808 166 24 0 chr12 61132681 61132807 -82653648 + AluJo SINE Alu 1 122 -190 234 0 0 0 chr12 61132807 61132833 -82653622 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1808 166 24 0 chr12 61132833 61132995 -82653460 + AluJo SINE Alu 122 296 -16 279 329 82 41 chr12 61133537 61133683 -82652772 + MER5A DNA MER1_type 36 187 -2 291 218 0 0 chr12 61134639 61134740 -82651715 + (TG)n Simple_repeat Simple_repeat 2 102 0 260 200 12 0 chr12 61134741 61134821 -82651634 + CT-rich Low_complexity Low_complexity 2 82 0 1923 231 24 51 chr12 61136266 61136799 -82649656 - LTR40a LTR ERVL 0 519 1 380 311 45 15 chr12 61136886 61137018 -82649437 + L2 LINE L2 3137 3272 0 275 297 219 7 chr12 61137863 61138018 -82648437 + MIR SINE MIR 25 212 -50 239 254 68 0 chr12 61138764 61138823 -82647632 + L2 LINE L2 3246 3308 -5 192 228 0 0 chr12 61138851 61138908 -82647547 + GA-rich Low_complexity Low_complexity 4 60 0 296 230 16 20 chr12 61138956 61139161 -82647294 + GA-rich Low_complexity Low_complexity 1 204 0 6110 127 25 17 chr12 61139393 61140354 -82646101 + LTR5 LTR ERVK 1 969 0 228 203 47 0 chr12 61141306 61141370 -82645085 - AluJ/monomer SINE Alu 0 300 234 681 207 0 0 chr12 61141400 61141569 -82644886 - FLAM_A SINE Alu 0 171 3 1572 198 44 65 chr12 61144208 61144667 -82641788 - MLT1C LTR MaLR 0 467 19 413 180 24 45 chr12 61146364 61146503 -82639952 + MER69 DNA AcHobo 2380 2526 0 274 295 45 36 chr12 61147593 61147705 -82638750 + L2 LINE L2 3201 3313 0 440 265 54 27 chr12 61147778 61147925 -82638530 + MER5B DNA MER1_type 27 177 -1 741 200 26 89 chr12 61148041 61148231 -82638224 - MER45A DNA AcHobo 0 178 1 199 309 48 12 chr12 61148527 61148611 -82637844 + MIR SINE MIR 107 193 -69 571 298 186 30 chr12 61149224 61149664 -82636791 - L3 LINE CR1 -110 1467 959 806 315 45 60 chr12 61150019 61150624 -82635831 - L2 LINE L2 -174 3139 2553 991 210 17 0 chr12 61150713 61150894 -82635561 + MER5A DNA MER1_type 6 189 0 2064 158 33 0 chr12 61151838 61152204 -82634251 + L1MB4 LINE L1 5803 6180 0 2911 202 47 3 chr12 61153626 61154244 -82632211 + MER82 DNA MER2_type 8 652 -1 276 248 113 32 chr12 61156046 61156165 -82630290 + MIR SINE MIR 36 172 -65 912 284 216 5 chr12 61156236 61156606 -82629849 + L2 LINE L2 2866 3313 0 1378 163 33 4 chr12 61157567 61157812 -82628643 + MSTB1 LTR MaLR 181 432 0 237 279 137 31 chr12 61158105 61158266 -82628189 + MLT1J1 LTR MaLR 217 394 -52 315 341 17 29 chr12 61158499 61158672 -82627783 - MLT2E LTR ERVL -418 210 40 2187 106 0 0 chr12 61159068 61159377 -82627078 + AluSx SINE Alu 1 309 0 180 345 81 40 chr12 61159518 61159666 -82626789 - MIR3 SINE MIR -9 199 46 1892 243 63 44 chr12 61159847 61160550 -82625905 + L1ME3 LINE L1 5445 6160 -2 301 348 59 0 chr12 61160590 61160725 -82625730 + MIR SINE MIR 36 178 -84 1648 182 167 26 chr12 61160860 61161315 -82625140 + MLT2B1 LTR ERVL 1 519 -1 187 298 18 0 chr12 61161977 61162034 -82624421 + L2 LINE L2 3256 3313 0 250 293 0 0 chr12 61162523 61162581 -82623874 + MIR3 SINE MIR 97 154 -54 197 385 26 0 chr12 61163093 61163171 -82623284 - MIR3 SINE MIR -120 88 9 355 359 120 10 chr12 61163461 61163670 -82622785 - MIR SINE MIR -3 259 28 1707 192 68 26 chr12 61163690 61163867 -82622588 - MSTD LTR MaLR 0 396 228 264 30 0 0 chr12 61163867 61163900 -82622555 + (TG)n Simple_repeat Simple_repeat 1 33 0 1707 192 68 26 chr12 61163900 61164102 -82622353 - MSTD LTR MaLR -168 228 1 2393 185 13 9 chr12 61164696 61165155 -82621300 - LOR1b LTR ERV1 0 461 1 279 281 168 12 chr12 61165345 61165512 -82620943 + L2 LINE L2 3118 3310 -3 330 287 28 35 chr12 61166766 61166909 -82619546 + L2 LINE L2 1870 2011 -1303 1879 198 49 47 chr12 61166960 61167450 -82619005 + MLT1D LTR MaLR 1 491 -14 341 221 107 107 chr12 61171015 61171164 -82615291 - MIR SINE MIR -93 169 21 283 261 14 0 chr12 61171803 61171872 -82614583 - MIR3 SINE MIR 0 208 139 623 188 18 0 chr12 61171890 61172002 -82614453 - MLT1A1 LTR MaLR -1 373 260 1722 125 80 21 chr12 61172002 61172315 -82614140 - THE1B LTR MaLR 0 364 1 865 191 39 38 chr12 61172315 61172565 -82613890 - MLT1A1 LTR MaLR -112 253 1 219 114 0 0 chr12 61172669 61172704 -82613751 + (TA)n Simple_repeat Simple_repeat 1 35 0 1168 220 121 73 chr12 61172709 61173205 -82613250 - MLT2B1 LTR ERVL 0 520 1 2390 197 66 31 chr12 61173758 61174305 -82612150 + MLT1F1 LTR MaLR 2 567 0 24 0 0 0 chr12 61174442 61174466 -82611989 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr12 61175019 61175042 -82611413 + (CA)n Simple_repeat Simple_repeat 2 24 0 2102 122 3 0 chr12 61176567 61176862 -82609593 - AluSx SINE Alu -16 296 1 268 291 67 96 chr12 61177070 61177413 -82609042 - L2 LINE L2 -648 2666 2334 295 389 58 7 chr12 61178223 61178362 -82608093 + L2 LINE L2 3116 3261 -11 271 294 98 37 chr12 61178428 61178591 -82607864 + MER117 DNA MER1_type 2 174 -23 232 324 99 36 chr12 61178636 61178747 -82607708 - L2 LINE L2 0 3272 3155 284 304 184 19 chr12 61178990 61179148 -82607307 - L2 LINE L2 0 3313 3130 330 67 0 0 chr12 61179594 61179639 -82606816 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr12 61179816 61179844 -82606611 + AT_rich Low_complexity Low_complexity 1 28 0 204 250 42 0 chr12 61180159 61180207 -82606248 + MIR SINE MIR 58 107 -101 379 298 80 21 chr12 61180347 61180535 -82605920 + MIR SINE MIR 2 200 -62 298 297 65 22 chr12 61181150 61181288 -82605167 - L2 LINE L2 -1 3312 3169 2201 152 62 27 chr12 61181381 61181890 -82604565 - MLT2A2 LTR ERVL 0 554 4 697 174 22 73 chr12 61182010 61182188 -82604267 - MER96 DNA MER1_type? -5 170 2 345 244 56 11 chr12 61183243 61183333 -82603122 + L2 LINE L2 3175 3268 -4 769 280 79 50 chr12 61183386 61184007 -82602448 + L2 LINE L2 2667 3311 -2 261 278 33 33 chr12 61184082 61184172 -82602283 - MIR SINE MIR -80 182 93 309 349 38 8 chr12 61185339 61185471 -82600984 + MIR SINE MIR 66 201 -61 1335 203 29 74 chr12 61185474 61185853 -82600602 - MLT1A1 LTR MaLR -3 362 1 183 323 165 0 chr12 61185894 61186021 -82600434 - MIR SINE MIR 0 262 115 193 366 188 5 chr12 61186556 61186769 -82599686 + MIR SINE MIR 11 262 0 189 330 94 58 chr12 61187659 61187850 -82598605 + L2 LINE L2 2472 2669 -645 265 75 0 25 chr12 61187907 61187947 -82598508 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2433 256 65 57 chr12 61188275 61188679 -82597776 + L1M4 LINE L1 3545 3944 -2202 4797 21 0 4 chr12 61188679 61189238 -82597217 + L1PA2 LINE L1 5598 6154 -1 2433 256 65 57 chr12 61189238 61189545 -82596910 + L1M4 LINE L1 3944 4247 -1899 1909 142 7 0 chr12 61189545 61189819 -82596636 + AluSx SINE Alu 15 290 -22 2433 256 65 57 chr12 61189819 61190295 -82596160 + L1M4 LINE L1 4247 4750 -1396 2089 121 30 0 chr12 61190295 61190593 -82595862 + AluSq SINE Alu 1 307 -6 2433 256 65 57 chr12 61190593 61190888 -82595567 + L1M4 LINE L1 4750 5041 -1105 223 382 48 21 chr12 61190985 61191171 -82595284 - MIR SINE MIR 0 262 72 265 207 0 0 chr12 61191725 61191783 -82594672 - MLT1A2 LTR MaLR -17 357 300 652 173 0 106 chr12 61191868 61192047 -82594408 - MLT1A2 LTR MaLR -214 160 1 791 209 127 0 chr12 61194513 61194671 -82591784 + MER45A DNA AcHobo 1 178 0 607 281 78 16 chr12 61194673 61194929 -82591526 - L2 LINE L2 -2631 683 412 619 318 123 13 chr12 61195255 61195491 -82590964 - MIR SINE MIR 0 262 1 2053 120 11 7 chr12 61197834 61198154 -82588301 + AluSx SINE Alu 1 321 0 24 0 0 0 chr12 61198368 61198392 -82588063 + AT_rich Low_complexity Low_complexity 1 24 0 2424 83 3 0 chr12 61200029 61200331 -82586124 + AluSq SINE Alu 1 303 -10 472 253 127 13 chr12 61201776 61201934 -82584521 - MIR3 SINE MIR -14 194 19 292 307 30 0 chr12 61202160 61202261 -82584194 - MIR3 SINE MIR -9 199 96 442 254 218 10 chr12 61202576 61202769 -82583686 + MIR SINE MIR 20 252 -10 867 243 138 37 chr12 61203480 61203945 -82582510 + MLT1F1 LTR MaLR 56 567 0 1116 282 157 11 chr12 61204586 61205043 -82581412 + L2 LINE L2 2796 3313 0 13737 51 4 4 chr12 61205725 61207544 -82578911 + L1P LINE L1 11 1829 -4317 185 362 191 14 chr12 61208937 61209078 -82577377 - L2 LINE L2 -4 3268 3103 276 136 30 15 chr12 61209085 61209151 -82577304 + (TA)n Simple_repeat Simple_repeat 1 67 0 1838 156 143 11 chr12 61209440 61209818 -82576637 + MSTA LTR MaLR 1 428 0 9058 141 22 45 chr12 61209820 61210185 -82576270 + MSTA-int LTR MaLR 3 375 -1205 2308 119 0 0 chr12 61210185 61210487 -82575968 - AluSx SINE Alu -10 302 1 9058 141 22 45 chr12 61210487 61211736 -82574719 + MSTA-int LTR MaLR 375 1580 0 2081 148 88 18 chr12 61211736 61212136 -82574319 + MSTA LTR MaLR 1 428 0 360 348 153 18 chr12 61212338 61212723 -82573732 - L3 LINE CR1 -9 1568 1132 5476 160 25 8 chr12 61263317 61264287 -82522168 + MSTA-int LTR MaLR 595 1580 0 2085 148 88 18 chr12 61264287 61264687 -82521768 + MSTA LTR MaLR 1 428 0 360 345 153 18 chr12 61264889 61265274 -82521181 - L3 LINE CR1 -9 1568 1132 181 328 17 0 chr12 61266177 61266235 -82520220 - L3 LINE CR1 -453 1124 1066 180 375 0 0 chr12 61266654 61266710 -82519745 + L2 LINE L2 3210 3265 -7 * 397 291 58 26 chr12 61266701 61266890 -82519565 - MIR SINE MIR -54 208 14 303 328 69 32 chr12 61267012 61267187 -82519268 - MER5B DNA MER1_type 0 178 2 2197 79 0 0 chr12 61267732 61268112 -82518343 + AluY SINE Alu 1 380 0 1565 199 14 37 chr12 61269017 61269369 -82517086 - MER2 DNA MER2_type 0 344 1 234 62 0 0 chr12 61272181 61272213 -82514242 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 994 160 47 12 chr12 61273062 61273231 -82513224 + AluJo SINE Alu 1 175 -137 563 197 80 0 chr12 61273465 61273602 -82512853 - L1MC2 LINE L1 -11 6333 6186 760 154 8 0 chr12 61273646 61273763 -82512692 - FLAM_C SINE Alu -15 118 1 2310 148 62 85 chr12 61274295 61274857 -82511598 - MER34C LTR ERV1 0 585 37 2935 126 133 16 chr12 61274865 61275422 -82511033 + LTR29 LTR ERV1 1 622 0 366 282 32 48 chr12 61275862 61275896 -82510559 + MER5A DNA MER1_type 43 76 -113 3030 162 40 75 chr12 61275896 61276612 -82509843 + LTR8 LTR ERV1 1 691 0 366 282 32 48 chr12 61276612 61276701 -82509754 + MER5A DNA MER1_type 76 164 -25 23 54 0 0 chr12 61276832 61276869 -82509586 + AT_rich Low_complexity Low_complexity 1 37 0 272 187 178 37 chr12 61277366 61277473 -82508982 + MLT1J LTR MaLR 390 511 0 183 340 117 11 chr12 61278765 61278859 -82507596 + L2 LINE L2 3203 3306 -7 1578 221 202 53 chr12 61279018 61279906 -82506549 - LTR28 LTR ERV1 0 1020 1 31 0 0 0 chr12 61279990 61280021 -82506434 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 61280322 61280343 -82506112 + AT_rich Low_complexity Low_complexity 1 21 0 1812 164 38 124 chr12 61280882 61281238 -82505217 - MLT1D LTR MaLR 0 505 211 2105 140 0 0 chr12 61281238 61281530 -82504925 - AluSx SINE Alu -20 292 1 1812 164 38 124 chr12 61281530 61281723 -82504732 - MLT1D LTR MaLR -294 211 3 221 302 107 47 chr12 61281796 61281874 -82504581 - MIR SINE MIR -45 217 145 1562 177 48 24 chr12 61281874 61282168 -82504287 - AluJo SINE Alu -8 304 4 221 302 107 47 chr12 61282168 61282238 -82504217 - MIR SINE MIR -117 145 60 653 253 44 0 chr12 61283056 61283214 -82503241 + MIR SINE MIR 98 262 0 635 191 55 80 chr12 61283212 61283411 -82503044 + L2 LINE L2 3120 3313 0 * 675 217 140 75 chr12 61283728 61284165 -82502290 + MER4C LTR ERV1 1 465 0 857 190 0 0 chr12 61284171 61284329 -82502126 - MER3 DNA MER1_type -46 163 6 300 206 0 0 chr12 61284339 61284407 -82502048 - MLT1I LTR MaLR -18 391 324 187 162 0 29 chr12 61284738 61284806 -82501649 + (TA)n Simple_repeat Simple_repeat 1 66 0 1576 181 40 0 chr12 61284873 61285199 -82501256 + L1MB5 LINE L1 5782 6120 -54 5165 55 15 18 chr12 61286289 61286968 -82499487 - L1PA7 LINE L1 -6 6148 5472 25564 94 12 3 chr12 61286971 61290822 -82495633 - L1PA7 LINE L1 -841 5305 1418 7102 96 26 14 chr12 61291106 61292184 -82494271 + MER41B-int LTR ERV1 4856 5946 0 3273 113 35 15 chr12 61292184 61292722 -82493733 + MER41B LTR ERV1 1 549 -86 873 136 0 0 chr12 61292993 61293111 -82493344 + FLAM_C SINE Alu 1 118 -25 200 303 255 37 chr12 61293183 61293559 -82492896 + L2 LINE L2 2807 3264 -8 281 370 93 14 chr12 61295829 61296045 -82490410 + MIR SINE MIR 15 247 -15 497 250 0 0 chr12 61296078 61296178 -82490277 + L2 LINE L2 3173 3272 0 273 313 51 45 chr12 61296758 61296934 -82489521 - MLT1J LTR MaLR -230 281 105 1312 79 0 5 chr12 61297471 61297661 -82488794 + L1PA13 LINE L1 5955 6143 -20 287 112 71 0 chr12 61297663 61297761 -82488694 + (TA)n Simple_repeat Simple_repeat 1 105 0 596 312 99 44 chr12 61298330 61298766 -82487689 + L2 LINE L2 2810 3269 -3 395 229 0 0 chr12 61300388 61300458 -82485997 + MIR SINE MIR 69 138 -70 1430 249 75 7 chr12 61302672 61303247 -82483208 + L1MEc LINE L1 1689 2302 -4094 612 216 0 0 chr12 61303899 61304015 -82482440 + FLAM_C SINE Alu 1 116 -27 25 0 0 0 chr12 61304031 61304056 -82482399 + AT_rich Low_complexity Low_complexity 1 25 0 540 170 9 19 chr12 61304116 61304222 -82482233 - L1PB4 LINE L1 -10 6146 6042 3607 148 19 21 chr12 61304222 61304311 -82482144 - L1PB4 LINE L1 -52 6104 6016 2866 218 15 46 chr12 61304311 61305687 -82480768 - L1MA4A LINE L1 -289 6014 4691 9642 171 18 9 chr12 61305687 61308289 -82478166 + L1PA14 LINE L1 3532 6161 0 1225 212 104 12 chr12 61308300 61308645 -82477810 + MLT1D LTR MaLR 128 504 -1 21 36 0 0 chr12 61309846 61309874 -82476581 + AT_rich Low_complexity Low_complexity 1 28 0 1262 149 0 5 chr12 61310659 61310847 -82475608 - AluSx SINE Alu -125 187 1 581 332 70 11 chr12 61311885 61312171 -82474284 - L3 LINE CR1 -83 1494 1192 907 216 0 17 chr12 61312203 61312379 -82474076 + MER5A DNA MER1_type 17 189 0 505 319 14 24 chr12 61312489 61312702 -82473753 + L2 LINE L2 3102 3312 -1 428 306 119 46 chr12 61312734 61312953 -82473502 - L3 LINE CR1 -607 970 736 22 0 0 0 chr12 61312973 61312995 -82473460 + AT_rich Low_complexity Low_complexity 1 22 0 880 209 16 5 chr12 61313126 61313313 -82473142 - MER5A DNA MER1_type 0 189 1 616 96 0 0 chr12 61315155 61315238 -82471217 + L1P3 LINE L1 14 96 -6365 * 7707 82 6 3 chr12 61315236 61316359 -82470096 + L1P3 LINE L1 670 1772 -4679 414 180 0 0 chr12 61316434 61316534 -82469921 + T-rich Low_complexity Low_complexity 1 100 0 294 245 94 9 chr12 61317544 61317650 -82468805 - MIR SINE MIR -26 236 122 635 210 0 17 chr12 61317654 61317773 -82468682 + FLAM_C SINE Alu 1 117 -16 621 144 0 0 chr12 61317777 61317895 -82468560 + (GGGAA)n Simple_repeat Simple_repeat 2 119 0 331 315 98 0 chr12 61317910 61318002 -82468453 - MIR SINE MIR -155 107 7 207 49 73 0 chr12 61318537 61318578 -82467877 + (TA)n Simple_repeat Simple_repeat 1 44 0 210 363 54 24 chr12 61318685 61318853 -82467602 - L2 LINE L2 -235 3037 2865 705 204 170 5 chr12 61319142 61319348 -82467107 + MIR SINE MIR 20 259 -3 195 129 0 0 chr12 61319351 61319382 -82467073 + (TTA)n Simple_repeat Simple_repeat 1 31 0 247 214 47 146 chr12 61319870 61320062 -82466393 + L1MC5 LINE L1 7745 7917 -44 262 350 29 0 chr12 61320124 61320227 -82466228 + L2 LINE L2 3208 3313 0 237 65 0 0 chr12 61320304 61320335 -82466120 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 105 0 0 chr12 61321780 61321856 -82464599 + L1PA8 LINE L1 6096 6171 -1 358 246 9 9 chr12 61321862 61321972 -82464483 + L1P LINE L1 5017 5126 -1020 541 124 0 0 chr12 61321972 61322061 -82464394 + L1PB1 LINE L1 5703 5791 -360 431 118 0 46 chr12 61322061 61322213 -82464242 + (TA)n Simple_repeat Simple_repeat 2 146 0 2183 134 11 8 chr12 61322217 61322582 -82463873 + L1PB1 LINE L1 5783 6148 -3 29 28 0 0 chr12 61322582 61322618 -82463837 + AT_rich Low_complexity Low_complexity 1 36 0 198 118 0 0 chr12 61322618 61322652 -82463803 + (A)n Simple_repeat Simple_repeat 1 34 0 226 250 52 37 chr12 61323341 61323477 -82462978 + L1M4 LINE L1 5118 5255 -891 282 324 33 37 chr12 61323579 61323820 -82462635 + L1M4 LINE L1 5409 5648 -526 228 298 12 36 chr12 61326026 61326110 -82460345 - MIR SINE MIR 0 262 181 701 303 106 29 chr12 61326130 61326509 -82459946 + L2 LINE L2 2520 2927 -387 454 315 37 51 chr12 61326640 61326856 -82459599 + MIR SINE MIR 15 227 -35 202 253 310 0 chr12 61326905 61326992 -82459463 - L2 LINE L2 -7 3306 3193 182 273 111 20 chr12 61327370 61327469 -82458986 - L2 LINE L2 -232 3040 2933 510 224 92 17 chr12 61327626 61327735 -82458720 + MLT1G LTR MaLR 404 532 -58 264 59 0 0 chr12 61327735 61327769 -82458686 + (CA)n Simple_repeat Simple_repeat 1 34 0 510 224 92 17 chr12 61327769 61327833 -82458622 + MLT1G LTR MaLR 532 590 0 314 179 0 12 chr12 61328368 61328452 -82458003 + MER53 DNA DNA 95 177 -12 306 237 0 11 chr12 61328378 61328471 -82457984 - MER53 DNA DNA -94 95 4 * 440 72 14 0 chr12 61328694 61328763 -82457692 + (CA)n Simple_repeat Simple_repeat 1 70 0 349 306 82 35 chr12 61329180 61329350 -82457105 - MIR3 SINE MIR -26 182 5 805 282 48 50 chr12 61329601 61329778 -82456677 + LTR16B LTR ERVL 34 210 -254 884 229 23 14 chr12 61329778 61329996 -82456459 - MER58A DNA MER1_type -1 223 4 805 282 48 50 chr12 61329996 61330236 -82456219 + LTR16B LTR ERVL 210 450 -14 1037 284 111 15 chr12 61331379 61331905 -82454550 - L2 LINE L2 -2 3311 2736 223 286 63 63 chr12 61331936 61332062 -82454393 + L2 LINE L2 3187 3312 -1 25 0 0 0 chr12 61332109 61332134 -82454321 + AT_rich Low_complexity Low_complexity 1 25 0 319 273 30 10 chr12 61332288 61332387 -82454068 + MER94 DNA DNA 33 133 -1 593 309 119 44 chr12 61333422 61333807 -82452648 + L2 LINE L2 2900 3313 0 1495 188 130 42 chr12 61334206 61334395 -82452060 + MSTD LTR MaLR 4 175 -221 2201 119 16 0 chr12 61334395 61334698 -82451757 - AluSx SINE Alu -2 310 3 1495 188 130 42 chr12 61334698 61334869 -82451586 + MSTD LTR MaLR 175 396 0 285 304 15 30 chr12 61335693 61335828 -82450627 - LTR67 LTR ERVL -14 543 411 784 283 42 53 chr12 61336207 61336472 -82449983 - L2 LINE L2 -1 3271 3010 785 250 30 47 chr12 61336533 61336765 -82449690 - L2 LINE L2 -175 3138 2911 768 305 111 56 chr12 61336761 61337400 -82449055 + L2 LINE L2 2298 2971 -343 * 1156 179 47 4 chr12 61338375 61338609 -82447846 + L1MB5 LINE L1 5813 6056 -118 533 105 11 0 chr12 61338612 61338707 -82447748 + (TA)n Simple_repeat Simple_repeat 2 97 0 2438 181 98 36 chr12 61338724 61339351 -82447104 - LTR8 LTR ERV1 0 691 1 2377 171 20 54 chr12 61339351 61340108 -82446347 - L1M4 LINE L1 -405 5769 5040 279 196 39 0 chr12 61342161 61342212 -82444243 - MER96 DNA MER1_type? -76 99 47 875 191 108 0 chr12 61342257 61342414 -82444041 + MER45A DNA AcHobo 1 174 -4 1182 215 68 30 chr12 61342509 61342877 -82443578 + L2 LINE L2 2591 2972 -342 348 254 25 8 chr12 61342997 61343119 -82443336 + L1M3 LINE L1 5494 5617 -563 634 323 25 25 chr12 61343682 61343917 -82442538 + MIR SINE MIR 7 241 -21 2837 164 14 14 chr12 61344613 61344954 -82441501 - MLT2B1 LTR ERVL -36 484 141 2417 141 88 30 chr12 61344954 61345386 -82441069 + MSTB2 LTR MaLR 1 457 0 2837 164 14 14 chr12 61345386 61345526 -82440929 - MLT2B1 LTR ERVL -378 142 3 997 227 78 26 chr12 61345868 61346176 -82440279 - MLT1B LTR MaLR -2 388 65 607 252 36 0 chr12 61346584 61346723 -82439732 + MIR3 SINE MIR 62 205 -3 937 271 83 73 chr12 61347286 61347380 -82439075 - L2 LINE L2 -203 3110 3018 4042 111 22 0 chr12 61347380 61347921 -82438534 + MER41A LTR ERV1 1 553 -1 937 271 83 73 chr12 61347921 61348604 -82437851 - L2 LINE L2 -295 3018 2322 2767 113 11 5 chr12 61348900 61349273 -82437182 - THE1C LTR MaLR 0 375 1 1044 298 154 35 chr12 61349477 61349833 -82436622 - L2 LINE L2 -995 2319 2007 8441 50 1 0 chr12 61349833 61350798 -82435657 + LTR5 LTR ERVK 1 966 -3 1044 298 154 35 chr12 61350798 61350992 -82435463 - L2 LINE L2 -1307 2007 1837 420 37 0 0 chr12 61350992 61351046 -82435409 + (CTTG)n Simple_repeat Simple_repeat 1 54 0 1044 298 154 35 chr12 61351046 61351085 -82435370 - L2 LINE L2 -1477 1837 1659 371 276 98 17 chr12 61351896 61352070 -82434385 - MIR3 SINE MIR -1 207 20 198 0 0 0 chr12 61352631 61352653 -82433802 + (TTTC)n Simple_repeat Simple_repeat 4 25 0 403 324 7 0 chr12 61352910 61353046 -82433409 - MIR3 SINE MIR -21 187 51 3181 111 7 5 chr12 61353516 61353949 -82432506 - MER57B LTR ERV1 0 434 1 2112 238 133 42 chr12 61354741 61355714 -82430741 - L2 LINE L2 0 3313 2238 215 295 39 64 chr12 61356553 61356706 -82429749 + MIR SINE MIR 24 126 -82 584 101 0 13 chr12 61356815 61356894 -82429561 + MADE1 DNA Mariner 3 80 0 16680 65 3 0 chr12 61357097 61359245 -82427210 + L1P LINE L1 1060 3214 -2932 745 198 24 0 chr12 61360372 61360498 -82425957 - FLAM_C SINE Alu -12 131 3 237 311 50 8 chr12 61361827 61361946 -82424509 - L3 LINE CR1 -291 1286 1163 1243 199 5 5 chr12 61362398 61362619 -82423836 - AluJb SINE Alu -91 221 1 226 337 0 41 chr12 61363084 61363182 -82423273 - MIR3 SINE MIR -6 202 109 514 288 105 7 chr12 61363300 61363453 -82423002 + MIR3 SINE MIR 20 187 -21 594 271 69 25 chr12 61363479 61363682 -82422773 - MIR SINE MIR -8 254 43 216 0 0 0 chr12 61363696 61363720 -82422735 + (TG)n Simple_repeat Simple_repeat 1 24 0 452 265 87 67 chr12 61364416 61364714 -82421741 - L1ME2 LINE L1 -9 6155 5852 246 232 36 0 chr12 61364802 61364858 -82421597 - L2 LINE L2 -218 3054 2997 830 281 107 29 chr12 61366083 61366467 -82419988 - MLT1J LTR MaLR -33 478 65 195 279 38 25 chr12 61366490 61366569 -82419886 - MIR SINE MIR -59 203 124 213 315 19 0 chr12 61366663 61366717 -82419738 + L2 LINE L2 3206 3260 -12 542 245 72 94 chr12 61367816 61368081 -82418374 + MIR SINE MIR 4 262 0 437 253 247 11 chr12 61368271 61368461 -82417994 + MIR SINE MIR 28 262 0 1773 148 3 48 chr12 61369737 61370047 -82416408 + AluJo SINE Alu 1 296 -16 498 282 128 15 chr12 61370201 61370396 -82416059 - MIR SINE MIR 0 262 46 219 191 143 48 chr12 61370553 61370616 -82415839 - L2 LINE L2 0 3272 3204 384 321 21 79 chr12 61370689 61370879 -82415576 + MER20B DNA MER1_type 1 179 -604 404 344 70 26 chr12 61371402 61371632 -82414823 + LTR67 LTR ERVL 2 241 -316 1214 258 108 28 chr12 61371752 61372225 -82414230 + MLT1J LTR MaLR 1 511 0 605 279 47 39 chr12 61373147 61373405 -82413050 + MLT1L LTR MaLR 356 615 0 1917 167 0 0 chr12 61374357 61374657 -82411798 - AluSx SINE Alu -12 300 1 31 68 0 0 chr12 61375488 61375547 -82410908 + AT_rich Low_complexity Low_complexity 1 59 0 10389 171 40 15 chr12 61375969 61378985 -82407470 - L1MA7 LINE L1 0 6291 3192 649 216 54 36 chr12 61378996 61379218 -82407237 + L1MB8 LINE L1 5900 6125 -53 4740 159 11 3 chr12 61379218 61381025 -82405430 - L1PA14 LINE L1 -2 6159 4241 2772 272 28 26 chr12 61381028 61381739 -82404716 - L1M3b LINE L1 -5438 843 246 342 0 0 0 chr12 61381739 61381777 -82404678 + (TG)n Simple_repeat Simple_repeat 1 38 0 2772 272 28 26 chr12 61381777 61382024 -82404431 - L1M3b LINE L1 -6035 246 1 195 364 57 0 chr12 61382069 61382157 -82404298 + L2 LINE L2 3203 3295 -18 895 195 19 0 chr12 61383369 61383528 -82402927 - AluJo SINE Alu -15 297 136 930 245 36 20 chr12 61384872 61385125 -82401330 - MIR SINE MIR -3 259 3 259 355 19 9 chr12 61385333 61385440 -82401015 - L2 LINE L2 -464 2850 2743 243 0 0 0 chr12 61385442 61385469 -82400986 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr12 61385468 61385489 -82400966 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 270 291 70 119 chr12 61385632 61386034 -82400421 + L2 LINE L2 2890 3271 -1 796 152 0 30 chr12 61386811 61386943 -82399512 - AluJo SINE Alu -174 128 1 233 319 97 9 chr12 61387045 61387158 -82399297 - L2 LINE L2 -2 3311 3189 2301 175 49 16 chr12 61387269 61387715 -82398740 - MLT2B1 LTR ERVL -56 464 4 394 311 12 37 chr12 61387871 61388032 -82398423 + MIR SINE MIR 36 192 -70 22 35 0 0 chr12 61388233 61388262 -82398193 + AT_rich Low_complexity Low_complexity 1 29 0 268 345 109 59 chr12 61389782 61390121 -82396334 + L2 LINE L2 2134 2489 -825 1194 153 0 26 chr12 61390244 61390473 -82395982 - MER96B DNA MER1_type? -194 223 1 317 389 13 39 chr12 61390731 61390965 -82395490 + L2 LINE L2 2806 3033 -239 2014 130 38 24 chr12 61391931 61392301 -82394154 + THE1C LTR MaLR 1 375 0 402 256 41 29 chr12 61392586 61392758 -82393697 - L1M4 LINE L1 -2098 4048 3875 290 278 48 8 chr12 61392832 61392958 -82393497 - HAL1 LINE L1 -950 1540 1410 21 71 0 0 chr12 61393062 61393104 -82393351 + AT_rich Low_complexity Low_complexity 1 42 0 435 305 83 15 chr12 61393177 61393431 -82393024 - L1MEd LINE L1 -1234 1256 898 961 126 46 134 chr12 61395463 61395702 -82390753 - MER20 DNA MER1_type 0 219 2 25 31 0 0 chr12 61395753 61395785 -82390670 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr12 61395816 61395841 -82390614 + (TG)n Simple_repeat Simple_repeat 2 26 0 428 195 240 71 chr12 61395852 61396006 -82390449 + MER5A DNA MER1_type 3 182 -7 264 240 85 62 chr12 61395892 61396021 -82390434 - MER5A DNA MER1_type -57 132 1 * 303 28 0 0 chr12 61396021 61396057 -82390398 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 57 0 19 chr12 61396067 61396097 -82390358 + AT_rich Low_complexity Low_complexity 1 31 -21 2273 117 39 3 chr12 61396097 61396457 -82389998 - THE1C LTR MaLR -2 373 1 21 57 0 19 chr12 61396457 61396479 -82389976 + AT_rich Low_complexity Low_complexity 31 52 0 300 190 17 0 chr12 61396522 61396580 -82389875 - MIR SINE MIR -123 139 81 416 317 55 25 chr12 61397843 61398045 -82388410 - MIR SINE MIR -51 211 4 302 68 0 0 chr12 61398712 61398756 -82387699 + MADE1 DNA Mariner 35 78 -2 28 48 0 0 chr12 61398774 61398816 -82387639 + AT_rich Low_complexity Low_complexity 1 42 0 185 146 36 73 chr12 61398990 61399045 -82387410 - MIR SINE MIR -24 238 186 5466 163 16 38 chr12 61399147 61401260 -82385195 - L1PA15 LINE L1 -2 6163 4113 2769 179 12 10 chr12 61401280 61401793 -82384662 + MLT2B2 LTR ERVL 2 515 0 318 87 0 0 chr12 61401803 61401849 -82384606 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 327 48 19 chr12 61401878 61401982 -82384473 - MIR3 SINE MIR -15 193 87 341 224 24 163 chr12 61402678 61402924 -82383531 - L1ME4a LINE L1 -12 6109 5898 248 234 39 13 chr12 61402967 61403044 -82383411 + L1MEc LINE L1 127 205 -6191 1627 193 14 0 chr12 61403049 61403334 -82383121 - AluJo SINE Alu -19 293 5 2556 51 0 0 chr12 61403447 61403759 -82382696 + AluYb8 SINE Alu 3 314 -4 668 250 77 0 chr12 61404156 61404324 -82382131 - MIR SINE MIR -2 260 80 1665 283 69 41 chr12 61404673 61405560 -82380895 + L2 LINE L2 2178 3085 -228 284 239 132 54 chr12 61405657 61405824 -82380631 - HAL1 LINE L1 0 2507 2328 249 33 0 0 chr12 61405970 61406000 -82380455 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3078 255 118 53 chr12 61406001 61407841 -82378614 - HAL1 LINE L1 -538 1969 11 403 227 106 28 chr12 61407857 61407998 -82378457 + L2 LINE L2 3159 3310 -3 3745 167 33 8 chr12 61408034 61408763 -82377692 - L1MB8 LINE L1 0 6178 5432 504 231 19 19 chr12 61409833 61409937 -82376518 + MIR3 SINE MIR 86 189 -19 22 0 0 0 chr12 61410231 61410253 -82376202 + AT_rich Low_complexity Low_complexity 1 22 0 369 57 0 0 chr12 61411285 61411338 -82375117 - MADE1 DNA Mariner 0 80 28 180 0 0 0 chr12 61411450 61411470 -82374985 + (TG)n Simple_repeat Simple_repeat 1 20 0 13958 32 1 0 chr12 61411801 61414240 -82372215 - L1PA4 LINE L1 0 6155 3715 307 75 0 19 chr12 61415106 61415159 -82371296 - MADE1 DNA Mariner 0 80 29 7389 37 5 0 chr12 61415622 61416576 -82369879 - L1PA4 LINE L1 0 6155 5199 342 253 77 69 chr12 61416699 61416960 -82369495 - L1MEd LINE L1 -4944 1175 913 560 305 129 26 chr12 61416989 61417261 -82369194 + L2 LINE L2 2148 2447 -867 447 257 175 10 chr12 61417660 61417866 -82368589 + MIR SINE MIR 2 241 -21 15610 67 1 0 chr12 61418055 61420138 -82366317 + L1P LINE L1 1 2085 -4061 231 361 154 31 chr12 61420733 61421646 -82364809 - L2 LINE L2 -1733 1581 556 439 223 36 36 chr12 61421740 61421852 -82364603 - MIR SINE MIR -118 144 33 28 29 0 0 chr12 61422012 61422047 -82364408 + AT_rich Low_complexity Low_complexity 1 35 0 2465 70 0 0 chr12 61422140 61422439 -82364016 - AluY SINE Alu -12 299 1 207 189 0 0 chr12 61422771 61422808 -82363647 + (CA)n Simple_repeat Simple_repeat 1 37 0 1791 203 15 125 chr12 61423133 61423735 -82362720 + MLT1E LTR MaLR 1 536 -57 315 0 0 0 chr12 61426169 61426204 -82360251 + (TG)n Simple_repeat Simple_repeat 1 35 0 805 167 0 0 chr12 61430464 61430584 -82355871 + FLAM_C SINE Alu 1 120 -23 207 0 0 0 chr12 61431470 61431493 -82354962 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 254 204 65 75 chr12 61431594 61431687 -82354768 - MLT1I LTR MaLR -15 394 303 368 265 81 7 chr12 61431730 61431866 -82354589 - MLT1I LTR MaLR -231 178 33 32 0 0 0 chr12 61432882 61432914 -82353541 + AT_rich Low_complexity Low_complexity 1 32 0 2037 114 0 34 chr12 61432959 61433256 -82353199 - AluSg SINE Alu -23 287 1 402 220 13 69 chr12 61433377 61433536 -82352919 - MLT1K LTR MaLR -17 571 422 22 0 0 0 chr12 61433578 61433600 -82352855 + AT_rich Low_complexity Low_complexity 1 22 0 255 318 28 9 chr12 61433807 61433914 -82352541 - MLT1K LTR MaLR -290 298 190 2262 119 137 8 chr12 61434016 61434395 -82352060 - MSTA LTR MaLR 0 428 1 372 262 62 55 chr12 61434501 61434646 -82351809 - L2 LINE L2 -1 3271 3126 2092 128 7 0 chr12 61434744 61435040 -82351415 + AluSq SINE Alu 2 299 -14 26 64 0 0 chr12 61436067 61436114 -82350341 + AT_rich Low_complexity Low_complexity 1 47 0 195 162 0 0 chr12 61437371 61437408 -82349047 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 23 33 0 0 chr12 61438302 61438332 -82348123 + AT_rich Low_complexity Low_complexity 1 30 0 2183 172 109 11 chr12 61439477 61439936 -82346519 + MER67D LTR ERV1 11 514 0 299 214 24 36 chr12 61440120 61440204 -82346251 + MLT1J LTR MaLR 353 435 -76 216 379 0 0 chr12 61440448 61440514 -82345941 + L2 LINE L2 3205 3270 -2 365 269 39 0 chr12 61441168 61441272 -82345183 + MIR3 SINE MIR 100 207 -1 559 204 72 99 chr12 61442460 61442571 -82343884 - MER33 DNA MER1_type -2261 324 212 420 20 0 0 chr12 61442571 61442620 -82343835 + (TA)n Simple_repeat Simple_repeat 2 50 0 2056 115 11 0 chr12 61442624 61442902 -82343553 - AluSx SINE Alu -31 281 1 559 204 72 99 chr12 61442902 61443118 -82343337 - MER33 DNA MER1_type -2376 209 1 894 54 0 0 chr12 61444893 61445005 -82341450 - AluSg/x SINE Alu 0 310 199 1113 160 0 0 chr12 61445278 61445447 -82341008 + AluSc SINE Alu 138 306 -3 216 296 0 37 chr12 61447578 61447632 -82338823 + MIR SINE MIR 21 72 -136 441 188 0 79 chr12 61447646 61447747 -82338708 - L2 LINE L2 0 3313 3221 481 358 0 45 chr12 61447771 61447947 -82338508 - MIR3 SINE MIR -31 177 10 632 68 184 0 chr12 61448038 61448141 -82338314 + L1MA5A LINE L1 6070 6191 -106 314 328 88 8 chr12 61448555 61448680 -82337775 + MIR SINE MIR 20 154 -108 371 293 29 23 chr12 61448950 61449124 -82337331 - MER5B DNA MER1_type -3 175 1 2195 127 3 0 chr12 61449128 61449436 -82337019 + AluSc SINE Alu 1 309 0 195 186 0 0 chr12 61449750 61449793 -82336662 + (TG)n Simple_repeat Simple_repeat 2 44 0 546 298 78 11 chr12 61450914 61451105 -82335350 - MIR SINE MIR -13 249 46 208 317 10 58 chr12 61451658 61451762 -82334693 + MER5A DNA MER1_type 17 115 -74 294 273 135 12 chr12 61451795 61451966 -82334489 + MIR SINE MIR 8 192 -70 181 287 120 19 chr12 61453093 61453201 -82333254 + L2 LINE L2 296 414 -2900 256 359 11 0 chr12 61453479 61453571 -82332884 + L3 LINE CR1 1044 1136 -441 359 326 117 29 chr12 61454132 61454371 -82332084 + L3 LINE CR1 1142 1401 -176 215 328 49 41 chr12 61454364 61454486 -82331969 + L2 LINE L2 2631 2753 -561 * 310 290 43 43 chr12 61454590 61454683 -82331772 + L3 LINE CR1 1481 1573 -4 230 381 33 14 chr12 61454682 61454897 -82331558 + L2 LINE L2 2168 2386 -928 * 225 301 71 9 chr12 61454907 61455020 -82331435 + L2 LINE L2 2942 3061 -252 1407 211 43 7 chr12 61455544 61455843 -82330612 + AluJo SINE Alu 1 310 -2 264 319 146 33 chr12 61456217 61456340 -82330115 - MIR SINE MIR -1 261 153 1936 119 54 40 chr12 61456340 61456710 -82329745 - THE1C LTR MaLR 0 375 1 264 319 146 33 chr12 61456710 61456799 -82329656 - MIR SINE MIR -109 153 25 350 292 31 23 chr12 61457054 61457184 -82329271 - MIR SINE MIR -42 220 90 362 293 128 29 chr12 61458137 61458379 -82328076 + L3b LINE CR1 1186 1451 -132 356 197 26 0 chr12 61458554 61458630 -82327825 - MER45A DNA AcHobo -1 177 100 490 204 10 10 chr12 61458688 61458786 -82327669 - MER45A DNA AcHobo -80 98 1 204 283 0 33 chr12 61458788 61458848 -82327607 + MIR3 SINE MIR 118 175 -33 216 0 0 0 chr12 61459627 61459651 -82326804 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 346 43 21 0 chr12 61460717 61460764 -82325691 - MADE1 DNA Mariner -31 49 2 3650 142 46 37 chr12 61460765 61461317 -82325138 + L1MA5 LINE L1 5569 6130 -170 796 164 0 0 chr12 61461317 61461439 -82325016 - FLAM_C SINE Alu -10 123 2 3650 142 46 37 chr12 61461439 61461607 -82324848 + L1MA5 LINE L1 6130 6295 -5 12104 127 22 8 chr12 61461648 61463659 -82322796 - Tigger2 DNA MER2_type -679 2039 1 296 346 149 34 chr12 61463668 61463876 -82322579 - MIR SINE MIR -2 260 29 271 343 121 12 chr12 61466377 61466543 -82319912 - MIR SINE MIR -36 226 43 676 126 9 0 chr12 61466858 61466969 -82319486 + L1PA16 LINE L1 6055 6166 0 4932 170 40 33 chr12 61467479 61468663 -82317792 + L1MC2 LINE L1 5150 6344 0 21 0 0 0 chr12 61471212 61471233 -82315222 + AT_rich Low_complexity Low_complexity 1 21 0 2348 120 83 10 chr12 61471285 61471684 -82314771 + MSTA LTR MaLR 1 428 0 1483 189 21 4 chr12 61471726 61472006 -82314449 + AluJo SINE Alu 12 296 -16 948 276 79 69 chr12 61472215 61472309 -82314146 - L2 LINE L2 -203 3110 3018 3795 107 22 0 chr12 61472309 61472850 -82313605 + MER41A LTR ERV1 1 553 -1 948 276 79 69 chr12 61472850 61473533 -82312922 - L2 LINE L2 -295 3018 2322 2583 113 11 5 chr12 61473829 61474202 -82312253 - THE1C LTR MaLR 0 375 1 689 274 213 25 chr12 61474406 61474763 -82311692 - L2 LINE L2 -995 2319 1896 8350 53 2 0 chr12 61474764 61475728 -82310727 + LTR5 LTR ERVK 1 966 -3 46221 17 3 0 chr12 61475731 61481250 -82305205 + HERVK LTR ERVK 1 5533 -1710 13812 21 0 0 chr12 61481492 61483154 -82303301 + HERVK LTR ERVK 5533 7148 -95 401 84 11 168 chr12 61483154 61483249 -82303206 + SVA Other Other 857 936 -450 8019 65 2 0 chr12 61483249 61484213 -82302242 + LTR5 LTR ERVK 1 966 -3 495 303 60 45 chr12 61484214 61484407 -82302048 - L2 LINE L2 -1412 1902 1702 456 35 0 0 chr12 61484407 61484465 -82301990 + (CTTG)n Simple_repeat Simple_repeat 1 58 0 495 303 60 45 chr12 61484465 61484538 -82301917 - L2 LINE L2 -1612 1702 1632 373 276 98 17 chr12 61485315 61485489 -82300966 - MIR3 SINE MIR -1 207 20 198 0 0 0 chr12 61486049 61486071 -82300384 + (TTTC)n Simple_repeat Simple_repeat 4 25 0 413 324 7 0 chr12 61486328 61486464 -82299991 - MIR3 SINE MIR -21 187 51 2922 104 12 7 chr12 61486934 61487366 -82299089 - MER57B LTR ERV1 0 434 1 2113 238 133 42 chr12 61488158 61489131 -82297324 - L2 LINE L2 0 3313 2238 217 299 35 60 chr12 61489970 61490123 -82296332 + MIR SINE MIR 24 126 -82 568 90 0 0 chr12 61490232 61490310 -82296145 + MADE1 DNA Mariner 3 80 0 974 194 0 74 chr12 61490458 61490595 -82295860 - MER58A DNA MER1_type -2217 203 86 2105 108 0 10 chr12 61490595 61490883 -82295572 - AluSx SINE Alu -15 297 13 974 194 0 74 chr12 61490883 61490961 -82295494 - MER58A DNA MER1_type -2334 86 4 304 302 0 21 chr12 61491197 61491293 -82295162 - L1MC4 LINE L1 -1334 6708 6615 251 261 23 0 chr12 61491296 61491384 -82295071 - L1MC4 LINE L1 -1339 6703 6614 327 224 0 82 chr12 61491402 61491500 -82294955 + L1MC4 LINE L1 6614 6703 -1339 2281 125 28 17 chr12 61491772 61492132 -82294323 + THE1B LTR MaLR 1 364 0 11386 84 5 1 chr12 61492132 61493699 -82292756 + THE1B-int LTR MaLR 1 1574 -6 1896 111 30 17 chr12 61493705 61494003 -82292452 + THE1B LTR MaLR 1 302 -62 1312 229 126 51 chr12 61494213 61494712 -82291743 + MLT1F LTR MaLR 1 589 -4 916 209 58 22 chr12 61496502 61496727 -82289728 + MIR SINE MIR 2 234 -28 2409 145 136 46 chr12 61498224 61498784 -82287671 + MER4B LTR ERV1 1 610 0 2268 142 57 47 chr12 61498994 61499260 -82287195 + MER31A LTR ERV1 10 285 -200 2403 100 0 3 chr12 61499260 61499569 -82286886 + AluSc SINE Alu 1 308 -1 2268 142 57 47 chr12 61499569 61499773 -82286682 + MER31A LTR ERV1 285 485 0 24 32 0 0 chr12 61499973 61500004 -82286451 + AT_rich Low_complexity Low_complexity 1 31 0 295 176 29 29 chr12 61501708 61501776 -82284679 + MIR SINE MIR 83 150 -58 2308 163 48 0 chr12 61501816 61502505 -82283950 - L1MA9 LINE L1 -578 5734 5015 876 200 9 140 chr12 61502510 61502619 -82283836 + L1MA9 LINE L1 5722 5844 -468 914 61 8 8 chr12 61502619 61502751 -82283704 + L1PB3 LINE L1 6023 6154 0 876 200 9 140 chr12 61502751 61503044 -82283411 + L1MA9 LINE L1 5844 6069 -243 14119 135 24 5 chr12 61503048 61505395 -82281060 - Tigger1 DNA MER2_type 0 2418 26 936 175 67 0 chr12 61505403 61505597 -82280858 + L1MA9 LINE L1 6070 6276 -36 463 180 78 16 chr12 61505616 61505720 -82280735 + L1M1 LINE L1 25 140 -7425 2208 107 0 0 chr12 61505720 61506009 -82280446 + AluSx SINE Alu 3 291 -21 463 180 78 16 chr12 61506009 61506032 -82280423 + L1M1 LINE L1 140 160 -7405 319 222 49 0 chr12 61506128 61506209 -82280246 + MIR SINE MIR 123 207 -55 2266 107 3 3 chr12 61507180 61507490 -82278965 - AluY SINE Alu -1 310 1 232 118 147 59 chr12 61507579 61507647 -82278808 - MLT1J LTR MaLR -41 470 397 798 204 0 25 chr12 61507681 61507838 -82278617 + FRAM SINE Alu 2 154 -22 602 287 18 57 chr12 61507903 61508182 -82278273 - MLT1J LTR MaLR -243 268 1 208 333 81 0 chr12 61508749 61508836 -82277619 + MIR SINE MIR 23 116 -92 189 364 36 83 chr12 61509339 61509406 -82277049 - L2 LINE L2 -2 3270 3201 3111 133 48 68 chr12 61509406 61509945 -82276510 + LTR36 LTR ERV1 2 529 -82 1335 190 95 37 chr12 61509945 61510118 -82276337 - AluJb SINE Alu 0 312 114 342 0 0 0 chr12 61510118 61510156 -82276299 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1335 190 95 37 chr12 61510156 61510277 -82276178 - AluJb SINE Alu -198 114 1 3111 133 48 68 chr12 61510277 61510359 -82276096 + LTR36 LTR ERV1 529 611 0 189 364 36 83 chr12 61510359 61510544 -82275911 - L2 LINE L2 -71 3201 3030 508 267 127 12 chr12 61511783 61511948 -82274507 + MIR SINE MIR 73 256 -6 1384 167 17 131 chr12 61515524 61515937 -82270518 - MER39 LTR ERV1 -1 706 341 326 231 104 21 chr12 61515939 61516056 -82270399 - MER39 LTR ERV1 -427 125 1 268 333 86 17 chr12 61516764 61516881 -82269574 - MIR SINE MIR -63 145 21 23 68 0 0 chr12 61516925 61516969 -82269486 + AT_rich Low_complexity Low_complexity 1 44 0 512 278 28 28 chr12 61517329 61517581 -82268874 + L1ME LINE L1 5567 5818 -303 453 277 55 31 chr12 61517589 61517845 -82268610 + L1MEd LINE L1 968 1229 -4890 242 333 0 0 chr12 61517915 61517981 -82268474 + MIR3 SINE MIR 105 170 -38 24 53 0 0 chr12 61518374 61518412 -82268043 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr12 61518439 61518466 -82267989 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 61518579 61518600 -82267855 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 61518865 61518900 -82267555 + AT_rich Low_complexity Low_complexity 1 35 0 533 272 39 34 chr12 61520286 61520492 -82265963 + MLT1K LTR MaLR 382 588 0 330 314 41 25 chr12 61520603 61520724 -82265731 + L2 LINE L2 3183 3305 -8 198 0 0 0 chr12 61521446 61521468 -82264987 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 834 185 22 11 chr12 61521487 61521671 -82264784 - MER5A DNA MER1_type -3 186 1 502 379 73 11 chr12 61522099 61522622 -82263833 + L2 LINE L2 863 1417 -1897 1309 232 156 31 chr12 61522699 61522864 -82263591 + MLT1F LTR MaLR 1 144 -398 2241 60 10 20 chr12 61522864 61523165 -82263290 + AluY SINE Alu 1 298 -13 1309 232 156 31 chr12 61523165 61523481 -82262974 + MLT1F LTR MaLR 144 542 0 223 340 111 35 chr12 61523490 61523834 -82262621 + L2 LINE L2 1559 1928 -1386 666 276 73 62 chr12 61524034 61524374 -82262081 - L2 LINE L2 -670 2644 2301 786 319 42 90 chr12 61526615 61527072 -82259383 + L2 LINE L2 2837 3271 -1 1007 320 138 45 chr12 61527091 61527363 -82259092 - L2 LINE L2 -40 3273 3028 2479 68 3 0 chr12 61527363 61527672 -82258783 + AluY SINE Alu 1 310 -1 1007 320 138 45 chr12 61527672 61528442 -82258013 - L2 LINE L2 -285 3028 2148 342 253 77 69 chr12 61528471 61528732 -82257723 + L1MEd LINE L1 999 1261 -4944 7519 34 1 0 chr12 61528855 61529804 -82256651 + L1PA5 LINE L1 5199 6148 -6 238 57 0 30 chr12 61529912 61529956 -82256499 + L1P LINE L1 5365 5406 -756 1496 171 163 19 chr12 61529958 61530326 -82256129 + MSTA LTR MaLR 1 421 -7 4816 132 33 17 chr12 61530327 61531200 -82255255 + L1MA8 LINE L1 5402 6288 -3 447 319 94 34 chr12 61531201 61531499 -82254956 + L1MEd LINE L1 1559 1874 -4522 2387 94 0 0 chr12 61531831 61532128 -82254327 + AluY SINE Alu 2 298 -13 299 325 39 0 chr12 61532245 61532399 -82254056 + L1ME3A LINE L1 5727 5886 -284 652 215 245 20 chr12 61532627 61532827 -82253628 + MIR SINE MIR 18 262 0 563 337 112 11 chr12 61532855 61533294 -82253161 - L2 LINE L2 -1487 1827 1345 474 180 60 0 chr12 61533376 61533476 -82252979 - MLT1A1 LTR MaLR 0 365 260 8856 102 51 31 chr12 61533476 61534904 -82251551 - THE1B-int LTR MaLR -123 1457 2 2099 143 19 19 chr12 61534905 61535269 -82251186 - THE1B LTR MaLR 0 364 1 693 133 31 31 chr12 61535270 61535398 -82251057 - MLT1A1 LTR MaLR -228 137 10 476 360 144 29 chr12 61535405 61536093 -82250362 - L2 LINE L2 -2083 1231 465 28 29 0 0 chr12 61536643 61536678 -82249777 + AT_rich Low_complexity Low_complexity 1 35 0 594 250 43 33 chr12 61537918 61538102 -82248353 - MIR SINE MIR -1 261 76 29 0 0 0 chr12 61538239 61538268 -82248187 + AT_rich Low_complexity Low_complexity 1 29 0 198 227 0 23 chr12 61538270 61538314 -82248141 + L3b LINE CR1 1524 1566 -17 912 316 106 32 chr12 61538662 61539054 -82247401 - L3 LINE CR1 -19 1558 1110 1330 161 38 110 chr12 61539054 61539445 -82247010 + MLT1A1 LTR MaLR 1 363 -2 912 316 106 32 chr12 61539445 61539619 -82246836 - L3 LINE CR1 -467 1110 950 645 253 52 57 chr12 61539816 61540054 -82246401 - MIR SINE MIR -2 260 18 2196 139 34 3 chr12 61541041 61541394 -82245061 + THE1B LTR MaLR 1 364 0 29 0 0 0 chr12 61544205 61544234 -82242221 + AT_rich Low_complexity Low_complexity 1 29 0 1024 161 134 35 chr12 61544329 61544583 -82241872 - MER1B DNA MER1_type 0 339 61 324 344 64 24 chr12 61544623 61544748 -82241707 + MIR SINE MIR 1 130 -132 365 270 74 27 chr12 61544776 61544924 -82241531 + MIR SINE MIR 94 248 -14 336 302 192 6 chr12 61544938 61545110 -82241345 + MIR3 SINE MIR 1 204 -4 727 300 88 31 chr12 61545136 61545226 -82241229 + L2 LINE L2 2937 3020 -293 2176 136 30 41 chr12 61545226 61545594 -82240861 + THE1B LTR MaLR 1 364 0 727 300 88 31 chr12 61545594 61545856 -82240599 + L2 LINE L2 3020 3309 -4 631 219 7 0 chr12 61545862 61546008 -82240447 + L1ME LINE L1 5633 5779 -383 340 265 127 39 chr12 61546146 61546327 -82240128 - MIR3 SINE MIR -9 199 3 398 292 146 5 chr12 61546352 61546544 -82239911 + MIR SINE MIR 34 252 -10 22 0 0 0 chr12 61546973 61546995 -82239460 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 61547784 61547806 -82238649 + AT_rich Low_complexity Low_complexity 1 22 0 369 292 36 36 chr12 61548294 61548431 -82238024 + MIR SINE MIR 40 176 -86 591 244 79 86 chr12 61548445 61548770 -82237685 - MLT1H LTR MaLR -16 533 169 2749 141 24 7 chr12 61548770 61549223 -82237232 - MER65C LTR ERV1 0 461 1 591 244 79 86 chr12 61549223 61549333 -82237122 - MLT1H LTR MaLR -380 169 60 473 220 19 28 chr12 61550660 61551097 -82235358 + (TA)n Simple_repeat Simple_repeat 1 433 0 192 217 0 0 chr12 61551188 61551234 -82235221 + (TA)n Simple_repeat Simple_repeat 1 46 0 571 275 145 15 chr12 61551350 61551550 -82234905 + MIR SINE MIR 7 232 -30 387 212 80 15 chr12 61551627 61551781 -82234674 + MLT1H LTR MaLR 23 175 -374 1317 202 21 78 chr12 61551841 61552223 -82234232 + MLT1A2 LTR MaLR 4 363 -11 246 188 7 194 chr12 61552336 61552480 -82233975 + MLT1A2 LTR MaLR 433 549 0 2087 137 7 0 chr12 61552512 61552805 -82233650 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr12 61552892 61552914 -82233541 + AT_rich Low_complexity Low_complexity 1 22 0 3479 95 11 0 chr12 61553540 61554065 -82232390 - L1P LINE L1 -1025 5121 4591 2606 52 20 0 chr12 61554060 61554435 -82232020 + L1PA8 LINE L1 5796 6177 0 * 2142 134 0 13 chr12 61555254 61555568 -82230887 + AluSx SINE Alu 1 310 -2 257 341 123 43 chr12 61556205 61556645 -82229810 - L2 LINE L2 -683 2631 2157 479 126 0 11 chr12 61559087 61559174 -82227281 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 253 215 182 25 chr12 61559801 61559837 -82226618 - MLT2C1 LTR ERVL -6 657 628 384 77 0 0 chr12 61559837 61559889 -82226566 + (TG)n Simple_repeat Simple_repeat 2 53 0 253 215 182 25 chr12 61559889 61559986 -82226469 - MLT2C1 LTR ERVL -35 628 313 670 111 135 7 chr12 61560200 61560336 -82226119 - MLT1E3 LTR MaLR -393 261 65 527 195 40 54 chr12 61560234 61560383 -82226072 - MLT2C1 LTR ERVL -250 147 1 * 28 0 0 0 chr12 61560790 61560818 -82225637 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 61562225 61562246 -82224209 + AT_rich Low_complexity Low_complexity 1 21 0 367 216 0 108 chr12 61562602 61562700 -82223755 - L2 LINE L2 0 3272 3186 2082 133 148 13 chr12 61562700 61563077 -82223378 + MSTA LTR MaLR 1 428 0 367 216 0 108 chr12 61563077 61563089 -82223366 - L2 LINE L2 -86 3186 3174 2343 76 3 17 chr12 61563228 61563529 -82222926 + AluY SINE Alu 3 299 -12 548 266 48 0 chr12 61563990 61564114 -82222341 - L2 LINE L2 -5 3267 3138 707 258 57 37 chr12 61564490 61564734 -82221721 + MIR SINE MIR 3 251 -11 980 184 167 14 chr12 61564811 61565242 -82221213 - MER39 LTR ERV1 -150 557 1 645 110 0 0 chr12 61566367 61566458 -82219997 - LTR47A LTR ERVL 0 452 362 1809 144 78 11 chr12 61567309 61567657 -82218798 - LTR47A LTR ERVL -81 371 1 369 339 81 11 chr12 61568857 61569031 -82217424 - MIR3 SINE MIR -14 194 9 526 304 48 29 chr12 61569729 61569936 -82216519 + MIR SINE MIR 50 260 -2 1785 167 0 10 chr12 61570411 61570711 -82215744 - AluJb SINE Alu -15 297 1 29 60 0 0 chr12 61571311 61571361 -82215094 + AT_rich Low_complexity Low_complexity 1 50 0 32 43 0 0 chr12 61571383 61571429 -82215026 + AT_rich Low_complexity Low_complexity 1 46 0 183 275 14 72 chr12 61573569 61573638 -82212817 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr12 61576420 61576444 -82210011 + AT_rich Low_complexity Low_complexity 1 24 0 269 346 58 0 chr12 61577742 61577846 -82208609 - L2 LINE L2 -26 3246 3137 393 244 0 0 chr12 61578186 61578309 -82208146 + C-rich Low_complexity Low_complexity 1 123 0 278 295 27 27 chr12 61578311 61578460 -82207995 + CT-rich Low_complexity Low_complexity 2 150 0 345 298 0 0 chr12 61578489 61578650 -82207805 + C-rich Low_complexity Low_complexity 1 161 0 12027 45 3 2 chr12 61578770 61580377 -82206078 + L1P LINE L1 2076 3684 -2462 381 273 111 23 chr12 61580639 61580855 -82205600 - L2 LINE L2 -578 2736 2502 504 274 26 26 chr12 61581737 61581890 -82204565 - MIR SINE MIR -56 206 54 449 280 47 27 chr12 61582596 61582896 -82203559 + L1M4 LINE L1 2318 2623 -3523 465 287 44 28 chr12 61583101 61583537 -82202918 + L1M4 LINE L1 2936 3378 -2768 285 278 96 17 chr12 61583594 61583709 -82202746 - MLT1K LTR MaLR -64 524 401 294 225 34 0 chr12 61583718 61583807 -82202648 - L1MB3 LINE L1 0 6183 6092 1502 138 32 112 chr12 61583824 61584200 -82202255 - L1MA8 LINE L1 -279 6012 5667 1446 94 0 0 chr12 61584201 61584392 -82202063 - AluSg/x SINE Alu 0 312 122 12860 21 0 11 chr12 61584394 61586758 -82199697 - L1PA2 LINE L1 0 6155 3817 547 212 0 0 chr12 61587134 61587242 -82199213 + MER5A DNA MER1_type 4 111 -78 363 268 88 72 chr12 61588546 61588796 -82197659 + MLT1K LTR MaLR 96 349 -239 252 231 205 0 chr12 61589015 61589093 -82197362 + MIR SINE MIR 49 142 -120 221 0 0 33 chr12 61589769 61589799 -82196656 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 186 133 0 0 chr12 61589941 61589971 -82196484 + (GGCTG)n Simple_repeat Simple_repeat 5 34 0 1611 221 114 22 chr12 61590378 61590826 -82195629 - MER39 LTR ERV1 0 707 219 1265 196 52 54 chr12 61592187 61592239 -82194216 - MLT1B LTR MaLR -3 502 451 3585 138 13 19 chr12 61592239 61592769 -82193686 + MER1A DNA MER1_type 1 527 0 1265 196 52 54 chr12 61592769 61593095 -82193360 - MLT1B LTR MaLR -54 451 1 213 322 66 33 chr12 61593608 61593729 -82192726 + L2 LINE L2 3132 3256 -16 393 336 125 4 chr12 61595632 61595864 -82190591 + MIR SINE MIR 3 262 0 181 409 78 17 chr12 61595879 61595994 -82190461 - L2 LINE L2 -74 3198 3077 436 335 25 6 chr12 61596029 61596190 -82190265 + L2 LINE L2 2598 2761 -553 1280 179 29 136 chr12 61596324 61596796 -82189659 - MLT2B1 LTR ERVL -4 516 1 592 351 64 17 chr12 61596798 61597157 -82189298 + L2 LINE L2 2897 3272 0 955 248 68 81 chr12 61597381 61598114 -82188341 - L1MC5 LINE L1 -28 7933 7210 965 214 116 66 chr12 61598219 61598692 -82187763 - L1MC4 LINE L1 -733 7228 6756 4074 92 29 2 chr12 61598692 61599248 -82187207 - L1PA8 LINE L1 -4 6168 5598 29632 47 35 2 chr12 61599348 61603038 -82183417 - L1P LINE L1 -2329 3817 6 1023 122 0 0 chr12 61603038 61603177 -82183278 - AluSg SINE Alu -170 140 2 2108 143 21 19 chr12 61603177 61603556 -82182899 - L1M1 LINE L1 -631 5669 5290 1225 199 34 67 chr12 61603626 61603983 -82182472 - L1MC5 LINE L1 -385 7576 7232 505 227 47 20 chr12 61604067 61604217 -82182238 - L1MD3 LINE L1 -11 7984 7831 243 296 41 20 chr12 61604898 61604996 -82181459 - MIR3 SINE MIR -6 202 103 1812 130 32 75 chr12 61604997 61605343 -82181112 + MER2 DNA MER2_type 1 331 -14 190 259 69 0 chr12 61606273 61606331 -82180124 + L2 LINE L2 3210 3271 -1 4714 66 0 0 chr12 61606622 61607182 -82179273 + L1PA7 LINE L1 5594 6153 -1 1619 150 39 14 chr12 61607457 61607743 -82178712 - MLT1A1 LTR MaLR -72 293 1 253 231 177 48 chr12 61607743 61607890 -82178565 + L1MEd LINE L1 695 860 -5259 * 526 212 134 0 chr12 61607874 61608053 -82178402 + L1ME3A LINE L1 5760 5962 -208 21 0 0 0 chr12 61608279 61608300 -82178155 + AT_rich Low_complexity Low_complexity 1 21 0 449 226 84 32 chr12 61608357 61608615 -82177840 + L1M2 LINE L1 5264 5532 -759 * 590 231 118 41 chr12 61608610 61608805 -82177650 + L1ME LINE L1 5563 5772 -349 311 267 84 8 chr12 61608860 61608991 -82177464 - MLT1L LTR MaLR -51 564 424 2697 23 7 3 chr12 61609006 61609316 -82177139 - AluY SINE Alu 0 311 1 383 264 8 41 chr12 61609398 61609519 -82176936 + MLT1H LTR MaLR 126 242 -307 428 190 66 66 chr12 61609605 61609742 -82176713 + MLT1H LTR MaLR 411 547 -2 406 271 28 95 chr12 61609748 61610014 -82176441 - MLT1L LTR MaLR -194 421 109 7608 57 6 2 chr12 61610757 61612364 -82174091 + L1PA8 LINE L1 4547 6167 -5 22 0 0 0 chr12 61612864 61612886 -82173569 + AT_rich Low_complexity Low_complexity 1 22 0 2679 95 46 0 chr12 61616923 61617271 -82169184 - THE1B LTR MaLR 0 364 1 291 286 106 19 chr12 61618295 61618456 -82167999 + L1ME4a LINE L1 5724 5898 -223 806 310 42 0 chr12 61619557 61619796 -82166659 + MIR SINE MIR 14 262 0 820 249 151 34 chr12 61620669 61621047 -82165408 + MER50 LTR ERV1 18 439 -295 1196 98 0 12 chr12 61621113 61621277 -82165178 + MER50 LTR ERV1 573 734 0 477 293 20 0 chr12 61621416 61621566 -82164889 - L2 LINE L2 -2 3311 3159 2172 116 76 17 chr12 61621601 61621955 -82164500 - THE1C LTR MaLR 0 375 1 2444 112 69 11 chr12 61621955 61622330 -82164125 - THE1C-int LTR MaLR 0 1580 1184 180 0 0 0 chr12 61622345 61622365 -82164090 + (GAATG)n Simple_repeat Simple_repeat 5 24 0 453 305 106 16 chr12 61622375 61622676 -82163779 - L2 LINE L2 -246 3067 2739 341 344 208 12 chr12 61623214 61623695 -82162760 + L2 LINE L2 2482 3059 -213 1417 213 40 26 chr12 61624201 61624549 -82161906 - MLT1A2 LTR MaLR -20 354 2 1362 145 10 0 chr12 61624610 61624817 -82161638 + MER58A DNA MER1_type 13 221 -3 260 204 0 19 chr12 61624817 61624871 -82161584 + MIR3 SINE MIR 151 203 -5 275 351 18 0 chr12 61625340 61625451 -82161004 - MIR3 SINE MIR -1 207 95 1656 181 3 29 chr12 61625507 61625821 -82160634 + AluJo SINE Alu 1 306 -6 1428 119 22 9 chr12 61625900 61626127 -82160328 + MER50 LTR ERV1 1 230 -504 * 1698 124 10 64 chr12 61626124 61626422 -82160033 + MER50 LTR ERV1 435 716 -18 720 232 76 0 chr12 61627844 61628042 -82158413 - MLT1B LTR MaLR -19 371 159 2286 117 38 46 chr12 61628237 61628604 -82157851 - THE1B LTR MaLR 0 364 1 1280 233 82 9 chr12 61628995 61629325 -82157130 + L1ME3 LINE L1 5584 5937 -225 567 286 69 11 chr12 61629526 61629715 -82156740 - MIR3 SINE MIR -7 201 2 4135 248 50 16 chr12 61630205 61631442 -82155013 + L1MEc LINE L1 35 1185 -4928 2878 155 16 89 chr12 61631453 61632014 -82154441 + MLT2B1 LTR ERVL 1 520 0 4419 171 42 69 chr12 61632019 61632936 -82153519 + ERVL-B1 LTR ERVL 6 898 -4866 2114 137 7 92 chr12 61633037 61633459 -82152996 - MER65A LTR ERV1 -59 386 1 19128 159 16 13 chr12 61633459 61636585 -82149870 + ERVL-B1 LTR ERVL 1081 4215 -1549 603 100 154 23 chr12 61636588 61636718 -82149737 + ERVL-B1 LTR ERVL 5363 5509 -255 279 83 67 50 chr12 61636721 61636781 -82149674 + ERVL-B1 LTR ERVL 5449 5509 -255 1497 137 25 38 chr12 61636784 61637098 -82149357 + ERVL-B1 LTR ERVL 5449 5758 -6 1339 227 109 28 chr12 61637099 61637557 -82148898 + ERVL-B1 LTR ERVL 16 414 0 1027 228 22 58 chr12 61637557 61637917 -82148538 + L1ME1 LINE L1 5798 6144 -22 23 78 0 0 chr12 61637940 61637991 -82148464 + AT_rich Low_complexity Low_complexity 1 51 0 2030 102 0 7 chr12 61638100 61638375 -82148080 + AluSx SINE Alu 1 273 -39 1052 92 5 27 chr12 61638376 61638560 -82147895 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 587 219 0 22 chr12 61638581 61638764 -82147691 + GA-rich Low_complexity Low_complexity 1 179 0 35 0 0 0 chr12 61638920 61638955 -82147500 + AT_rich Low_complexity Low_complexity 1 35 0 411 252 18 18 chr12 61639128 61639239 -82147216 + MER5A DNA MER1_type 7 117 -72 1776 250 35 35 chr12 61639413 61639976 -82146479 + L1M4 LINE L1 16 578 -5964 2440 232 10 95 chr12 61639984 61640815 -82145640 + L1PA14 LINE L1 2537 3296 -2850 387 0 0 0 chr12 61640828 61640871 -82145584 + (CA)n Simple_repeat Simple_repeat 2 44 0 4654 157 3 2 chr12 61640888 61641747 -82144708 + L1PA14 LINE L1 3704 4563 -1583 3854 143 16 0 chr12 61641747 61642376 -82144079 + L1PA14 LINE L1 5522 6161 0 1295 226 33 8 chr12 61642376 61642738 -82143717 + L1M4 LINE L1 1331 1701 -4841 268 287 10 0 chr12 61643206 61643307 -82143148 - MER94 DNA DNA -32 102 1 539 258 216 6 chr12 61643920 61644087 -82142368 + MIR SINE MIR 44 245 -17 248 258 11 54 chr12 61644638 61644731 -82141724 + CT-rich Low_complexity Low_complexity 6 94 0 1560 184 82 40 chr12 61645079 61645459 -82140996 - MSTD LTR MaLR 0 396 1 227 61 91 0 chr12 61645600 61645633 -82140822 + MLT1I LTR MaLR 101 136 -273 2386 149 26 0 chr12 61645764 61646153 -82140302 - MSTB LTR MaLR -26 400 2 582 242 221 12 chr12 61646203 61646447 -82140008 + MLT1H LTR MaLR 255 549 0 214 272 259 0 chr12 61646501 61646582 -82139873 - MER91C DNA MER1_type -37 103 2 350 318 110 19 chr12 61647527 61647681 -82138774 + MIR3 SINE MIR 36 203 -5 340 213 25 25 chr12 61647860 61647940 -82138515 - L2 LINE L2 0 3313 3234 21 71 0 0 chr12 61648955 61648997 -82137458 + AT_rich Low_complexity Low_complexity 1 42 0 575 289 89 18 chr12 61649014 61649294 -82137161 + L1MC4a LINE L1 6459 6758 -1050 5222 117 8 1 chr12 61649294 61650133 -82136322 + L1P LINE L1 4422 5266 -880 621 332 85 28 chr12 61650235 61650657 -82135798 + L2 LINE L2 2818 3263 -9 263 197 42 0 chr12 61650691 61650762 -82135693 - MER116 DNA Mariner -4 76 3 789 160 8 0 chr12 61651588 61651713 -82134742 + FLAM_A SINE Alu 1 126 -7 348 265 59 44 chr12 61652308 61652444 -82134011 + MIR3 SINE MIR 5 142 -66 689 305 153 8 chr12 61652548 61653079 -82133376 + MLT1L LTR MaLR 8 615 0 2498 189 60 39 chr12 61653336 61653949 -82132506 + MLT1E2 LTR MaLR 1 626 0 216 0 0 0 chr12 61654287 61654311 -82132144 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 186 171 0 0 chr12 61654576 61654617 -82131838 + A-rich Low_complexity Low_complexity 1 41 0 29 28 0 0 chr12 61654909 61654945 -82131510 + AT_rich Low_complexity Low_complexity 1 36 0 1865 125 72 0 chr12 61655602 61655881 -82130574 - AluJb SINE Alu -13 299 1 223 270 99 63 chr12 61655990 61656101 -82130354 - L2 LINE L2 -4 3268 3154 1096 194 33 21 chr12 61656720 61656962 -82129493 + MLT1D LTR MaLR 23 267 -238 21 0 0 0 chr12 61656978 61656999 -82129456 + AT_rich Low_complexity Low_complexity 1 21 0 51 17 0 0 chr12 61657292 61657350 -82129105 + AT_rich Low_complexity Low_complexity 1 58 0 342 214 14 0 chr12 61657541 61657611 -82128844 + MER21B LTR ERV1 19 89 -774 3328 182 98 29 chr12 61657612 61658018 -82128437 + MER21B LTR ERV1 41 418 -445 1832 186 11 32 chr12 61658018 61658388 -82128067 + MLT1A1 LTR MaLR 4 365 0 3328 182 98 29 chr12 61658388 61658750 -82127705 + MER21B LTR ERV1 418 862 -1 393 253 30 20 chr12 61658758 61658857 -82127598 + MIR SINE MIR 5 104 -158 * 592 203 367 0 chr12 61658839 61659016 -82127439 - MIR SINE MIR -13 249 8 2514 60 0 0 chr12 61659023 61659325 -82127130 - AluY SINE Alu -9 302 1 1557 193 35 71 chr12 61659371 61659682 -82126773 - MLT2D LTR ERVL -2 412 118 1927 132 31 7 chr12 61659682 61659971 -82126484 + AluSx SINE Alu 1 296 -16 1557 193 35 71 chr12 61659971 61660084 -82126371 - MLT2D LTR ERVL -296 118 3 844 228 35 51 chr12 61660428 61660683 -82125772 + MIR SINE MIR 2 252 -10 2914 27 0 6 chr12 61710790 61711119 -82075336 + L1PA2 LINE L1 5829 6155 0 1446 94 0 0 chr12 61711120 61711311 -82075144 + AluSg/x SINE Alu 120 310 0 1646 141 32 112 chr12 61711312 61711688 -82074767 + L1MA8 LINE L1 5667 6012 -279 337 225 34 0 chr12 61711705 61711794 -82074661 + L1MB3 LINE L1 6092 6183 0 329 282 94 17 chr12 61711803 61711920 -82074535 + MLT1K LTR MaLR 401 526 -62 256 278 41 41 chr12 61711974 61712168 -82074287 - L1M4 LINE L1 -2768 3378 3185 248 258 11 54 chr12 61712769 61712862 -82073593 + CT-rich Low_complexity Low_complexity 6 94 0 1729 184 82 40 chr12 61713210 61713590 -82072865 - MSTD LTR MaLR 0 396 1 244 61 91 0 chr12 61713731 61713764 -82072691 + MLT1I LTR MaLR 101 136 -273 2849 152 24 0 chr12 61713783 61714198 -82072257 - MSTB LTR MaLR 0 426 2 665 242 221 12 chr12 61714248 61714492 -82071963 + MLT1H LTR MaLR 255 549 0 218 272 259 0 chr12 61714546 61714627 -82071828 + MER91C DNA MER1_type 38 139 -1 250 273 13 0 chr12 61714829 61714906 -82071549 + (TA)n Simple_repeat Simple_repeat 2 79 0 340 318 110 19 chr12 61715687 61715841 -82070614 + MIR3 SINE MIR 36 203 -5 338 203 14 29 chr12 61716020 61716089 -82070366 - L2 LINE L2 0 3272 3205 2278 10 53 0 chr12 61716637 61716940 -82069515 - L1PA3 LINE L1 -221 5934 5616 32101 109 12 61 chr12 61716942 61723020 -82063435 - L1P3 LINE L1 -378 5776 12 2145 114 3 19 chr12 61724131 61724447 -82062008 - AluSx SINE Alu -1 311 1 2137 160 3 6 chr12 61724454 61724792 -82061663 + MLT1A1 LTR MaLR 29 365 0 855 250 20 20 chr12 61724792 61724988 -82061467 - MIR SINE MIR -43 219 24 21 36 0 0 chr12 61725187 61725215 -82061240 + AT_rich Low_complexity Low_complexity 1 28 0 377 90 51 26 chr12 61725219 61725297 -82061158 - L1MC5 LINE L1 -31 7930 7851 847 264 48 24 chr12 61725511 61725761 -82060694 - MIR SINE MIR -2 260 5 399 351 170 21 chr12 61725763 61726533 -82059922 + L2 LINE L2 1996 2880 -434 235 244 94 71 chr12 61726673 61726800 -82059655 + L2 LINE L2 2981 3110 -162 322 269 0 0 chr12 61726808 61726886 -82059569 + MLT1L LTR MaLR 1 78 -537 1732 181 14 0 chr12 61726921 61727203 -82059252 + AluJo SINE Alu 1 286 -26 923 188 20 51 chr12 61727209 61727406 -82059049 + AluJo SINE Alu 104 294 -18 523 256 128 76 chr12 61727411 61727793 -82058662 + MLT1J LTR MaLR 108 509 -2 394 249 62 34 chr12 61728128 61728305 -82058150 + LTR16C LTR ERVL 225 406 -85 809 179 15 0 chr12 61728473 61728607 -82057848 + L1M4c LINE L1 18 153 -6231 9280 154 45 77 chr12 61728609 61728664 -82057791 + L1M4c LINE L1 507 562 -5820 3587 60 0 11 chr12 61728664 61729100 -82057355 + L1PA7 LINE L1 5724 6154 0 9280 154 45 77 chr12 61729100 61730423 -82056032 + L1M4c LINE L1 562 1769 -4613 1561 197 3 11 chr12 61730423 61730707 -82055748 + AluJo SINE Alu 1 282 -30 9280 154 45 77 chr12 61730707 61731922 -82054533 + L1M4c LINE L1 1769 3022 -3360 4415 173 86 93 chr12 61731922 61733167 -82053288 + MER52A LTR ERV1 1 1125 -153 411 293 53 0 chr12 61733326 61733514 -82052941 - L1M4 LINE L1 -3633 2513 2316 497 289 20 33 chr12 61734174 61734371 -82052084 + MIR SINE MIR 18 206 -56 633 307 108 40 chr12 61735252 61735968 -82050487 + L2 LINE L2 2502 3263 -9 300 206 41 0 chr12 61736002 61736075 -82050380 - MER116 DNA Mariner -4 76 1 839 160 8 0 chr12 61736899 61737024 -82049431 + FLAM_A SINE Alu 1 126 -7 314 259 28 56 chr12 61737633 61737741 -82048714 + MIR SINE MIR 38 142 -66 888 305 153 8 chr12 61737845 61738376 -82048079 + MLT1L LTR MaLR 8 615 0 2755 183 70 49 chr12 61738633 61739246 -82047209 + MLT1E2 LTR MaLR 1 626 0 216 0 0 0 chr12 61739584 61739608 -82046847 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 186 171 0 0 chr12 61739873 61739914 -82046541 + A-rich Low_complexity Low_complexity 1 41 0 29 28 0 0 chr12 61740206 61740242 -82046213 + AT_rich Low_complexity Low_complexity 1 36 0 1868 122 72 0 chr12 61740899 61741177 -82045278 - AluJb SINE Alu -14 298 1 223 270 99 63 chr12 61741286 61741397 -82045058 - L2 LINE L2 -4 3268 3154 1204 196 33 20 chr12 61742016 61742261 -82044194 + MLT1D LTR MaLR 23 270 -235 21 0 0 0 chr12 61742274 61742295 -82044160 + AT_rich Low_complexity Low_complexity 1 21 0 51 17 0 0 chr12 61742588 61742646 -82043809 + AT_rich Low_complexity Low_complexity 1 58 0 368 214 14 0 chr12 61742837 61742907 -82043548 + MER21B LTR ERV1 19 89 -774 3670 177 98 29 chr12 61742908 61743314 -82043141 + MER21B LTR ERV1 41 418 -445 1994 186 11 32 chr12 61743314 61743684 -82042771 + MLT1A1 LTR MaLR 4 365 0 3670 177 98 29 chr12 61743684 61744046 -82042409 + MER21B LTR ERV1 418 862 -1 390 258 21 21 chr12 61744054 61744147 -82042308 + MIR SINE MIR 5 97 -165 * 603 198 367 0 chr12 61744135 61744312 -82042143 - MIR SINE MIR -13 249 8 2546 53 0 0 chr12 61744319 61744620 -82041835 - AluY SINE Alu -10 301 1 2046 185 26 63 chr12 61744666 61744977 -82041478 - MLT2D LTR ERVL -2 412 120 1975 131 28 7 chr12 61744977 61745267 -82041188 + AluSx SINE Alu 1 296 -16 2046 185 26 63 chr12 61745267 61745383 -82041072 - MLT2D LTR ERVL -294 120 1 367 275 156 0 chr12 61746283 61746392 -82040063 + MIR SINE MIR 17 142 -120 221 0 0 33 chr12 61747067 61747097 -82039358 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 186 133 0 0 chr12 61747239 61747269 -82039186 + (GGCTG)n Simple_repeat Simple_repeat 5 34 0 1626 219 114 22 chr12 61747676 61748124 -82038331 - MER39 LTR ERV1 0 707 219 1265 196 52 54 chr12 61749485 61749537 -82036918 - MLT1B LTR MaLR -3 502 451 3612 136 13 19 chr12 61749537 61750067 -82036388 + MER1A DNA MER1_type 1 527 0 1265 196 52 54 chr12 61750067 61750393 -82036062 - MLT1B LTR MaLR -54 451 1 213 322 66 33 chr12 61750906 61751027 -82035428 + L2 LINE L2 3132 3256 -16 561 205 0 0 chr12 61751974 61752082 -82034373 + MER5A DNA MER1_type 4 111 -78 540 275 101 66 chr12 61753382 61753837 -82032618 + MLT1K LTR MaLR 96 566 -22 758 86 0 0 chr12 61754251 61754344 -82032111 + AluSg1 SINE Alu 2 94 -215 237 286 0 0 chr12 61754345 61754401 -82032054 + L2 LINE L2 2915 2970 -343 287 288 82 0 chr12 61754610 61754683 -82031772 + L2 LINE L2 3192 3270 -2 406 255 259 28 chr12 61754797 61755013 -82031442 - MLT1J2 LTR MaLR -118 332 67 2331 237 40 40 chr12 61755763 61756358 -82030097 - MLT1G1 LTR MaLR 0 595 1 275 273 62 23 chr12 61757383 61757511 -82028944 + L1MC4 LINE L1 7910 8042 0 224 226 132 75 chr12 61757605 61757764 -82028691 - L2 LINE L2 -688 2626 2459 212 241 168 52 chr12 61757804 61757995 -82028460 - L2 LINE L2 -963 2351 2139 2037 157 51 3 chr12 61758799 61759130 -82027325 + MER7A DNA MER2_type 2 346 0 316 308 136 42 chr12 61759476 61759784 -82026671 + MLT1J1 LTR MaLR 69 405 -41 724 271 69 52 chr12 61760219 61760761 -82025694 - MLT1L LTR MaLR -22 593 1 377 239 91 0 chr12 61762299 61762387 -82024068 + MER58 DNA MER1_type 4 99 -242 402 187 132 0 chr12 61762398 61762489 -82023966 + MER58 DNA MER1_type 2317 2419 -1 293 367 0 0 chr12 61762625 61762715 -82023740 - MIR SINE MIR -68 140 51 183 42 0 0 chr12 61762887 61762911 -82023544 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2910 185 114 7 chr12 61767309 61767887 -82018568 + MER52A LTR ERV1 1115 1754 -1 1025 148 27 55 chr12 61767914 61768097 -82018358 + AluJo SINE Alu 105 282 -30 22 0 0 0 chr12 61768102 61768124 -82018331 + AT_rich Low_complexity Low_complexity 1 22 0 6070 194 25 99 chr12 61768128 61769439 -82017016 + L1MB3 LINE L1 3684 4955 -1205 841 174 8 8 chr12 61769439 61769571 -82016884 + FLAM_C SINE Alu 2 133 -10 6070 194 25 99 chr12 61769571 61769942 -82016513 + L1MB3 LINE L1 4955 5352 -808 4853 167 20 6 chr12 61770224 61771068 -82015387 + L1MB3 LINE L1 5321 6176 -7 27 29 0 0 chr12 61771350 61771384 -82015071 + AT_rich Low_complexity Low_complexity 1 34 0 567 245 203 0 chr12 61772742 61772954 -82013501 - MIR SINE MIR -2 260 6 454 332 56 30 chr12 61773195 61773242 -82013213 - MIR SINE MIR -5 257 213 2581 114 31 14 chr12 61773242 61773600 -82012855 - THE1B LTR MaLR 0 364 1 454 332 56 30 chr12 61773600 61773784 -82012671 - MIR SINE MIR -49 213 20 324 102 0 0 chr12 61773808 61773857 -82012598 + (CA)n Simple_repeat Simple_repeat 2 50 0 2511 66 0 3 chr12 61773913 61774216 -82012239 + AluY SINE Alu 1 302 -9 250 169 44 73 chr12 61774221 61774357 -82012098 + (TAA)n Simple_repeat Simple_repeat 1 132 0 887 227 140 34 chr12 61774404 61774784 -82011671 + MER57A LTR ERV1 9 403 0 248 345 127 24 chr12 61774786 61774951 -82011504 + L3 LINE CR1 1391 1572 -5 1581 277 225 19 chr12 61775079 61776244 -82010211 + L2 LINE L2 1882 3309 -4 4849 73 2 0 chr12 61778143 61778733 -82007722 - L1PA8 LINE L1 -2 6170 5580 353 297 35 7 chr12 61778911 61779056 -82007399 + MER103 DNA DNA 8 156 -10 347 231 28 65 chr12 61779175 61779283 -82007172 + MIR SINE MIR 105 208 -54 21 36 0 0 chr12 61779673 61779701 -82006754 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 61779779 61779804 -82006651 + AT_rich Low_complexity Low_complexity 1 25 0 203 279 0 0 chr12 61781719 61781762 -82004693 + polypyrimidine Low_complexity Low_complexity 2 44 0 24 32 0 0 chr12 61782034 61782065 -82004390 + AT_rich Low_complexity Low_complexity 1 31 0 401 198 156 30 chr12 61782093 61782260 -82004195 + MER53 DNA DNA 1 188 -1 2479 27 10 10 chr12 61782642 61782971 -82003484 + L1PA3 LINE L1 5863 6155 0 3242 43 8 0 chr12 61782971 61783341 -82003114 + L1PA7 LINE L1 5769 6141 -13 559 269 67 52 chr12 61783888 61784156 -82002299 + MLT1L LTR MaLR 344 615 0 572 276 0 26 chr12 61784427 61784583 -82001872 + MIR SINE MIR 40 191 -71 2088 151 86 6 chr12 61784728 61785066 -82001389 - MLT1A1 LTR MaLR 0 365 1 316 243 97 10 chr12 61786409 61786512 -81999943 + L1ME LINE L1 5560 5671 -450 182 211 0 0 chr12 61786924 61786962 -81999493 - L2 LINE L2 -9 3304 3267 207 162 0 0 chr12 61787578 61787615 -81998840 + GA-rich Low_complexity Low_complexity 2 38 0 2091 124 59 34 chr12 61788574 61788929 -81997526 - THE1B LTR MaLR 0 364 1 1027 269 114 29 chr12 61789402 61789848 -81996607 - MLT2F LTR ERVL 0 663 180 4260 251 42 25 chr12 61789874 61791075 -81995380 - ERVL LTR ERVL -920 4844 3623 1122 152 21 0 chr12 61791080 61791271 -81995184 + MER2 DNA MER2_type 4 198 -147 278 236 14 14 chr12 61791306 61791378 -81995077 + MER2 DNA MER2_type 268 339 -6 1118 268 156 0 chr12 61791380 61791802 -81994653 - ERVL LTR ERVL -2073 3581 3094 21 0 0 0 chr12 61791968 61791989 -81994466 + AT_rich Low_complexity Low_complexity 1 21 0 27169 49 1 0 chr12 61793941 61798263 -81988192 - L1PA5 LINE L1 0 6154 1831 40255 39 22 1 chr12 61798264 61804312 -81982143 + L1PA3 LINE L1 1 6175 0 12958 93 1 0 chr12 61804312 61806142 -81980313 - L1PA5 LINE L1 -4305 1841 11 7186 168 29 25 chr12 61806160 61807794 -81978661 - L1 LINE L1 -1744 4402 2762 6109 141 33 35 chr12 61807805 61807929 -81978526 - L1MA4 LINE L1 -9 6993 6870 2199 135 0 7 chr12 61807929 61808232 -81978223 - AluSx SINE Alu -11 301 1 6109 141 33 35 chr12 61808232 61810289 -81976166 - L1MA4 LINE L1 -132 6870 4820 1996 138 41 0 chr12 61810300 61810591 -81975864 + AluSg SINE Alu 1 303 -7 1647 126 22 4 chr12 61810591 61810862 -81975593 - L1MA4 LINE L1 -6572 277 2 625 277 70 45 chr12 61811864 61812106 -81974349 + MIR SINE MIR 1 248 -14 2667 212 36 19 chr12 61814347 61817872 -81968583 + L1PA5 LINE L1 369 3831 -2974 2667 59 3 3 chr12 61817872 61818211 -81968244 + L1PA5 LINE L1 6461 6799 -6 2667 212 36 19 chr12 61818211 61819831 -81966624 + L1PA5 LINE L1 3831 5421 -1384 3300 60 0 0 chr12 61819831 61820246 -81966209 - L1PA5 LINE L1 0 6154 5740 2667 212 36 19 chr12 61820246 61820481 -81965974 + L1PA5 LINE L1 5421 5650 -1155 2037 37 0 0 chr12 61820481 61820724 -81965731 + L1PA4 LINE L1 5911 6154 -1 2667 212 36 19 chr12 61820724 61820820 -81965635 + L1PA5 LINE L1 5650 6799 -6 1612 170 52 25 chr12 61820823 61821188 -81965267 + THE1C LTR MaLR 1 375 0 8799 137 13 35 chr12 61821190 61822739 -81963716 + THE1C-int LTR MaLR 3 1516 -64 3075 115 52 37 chr12 61822756 61823330 -81963125 + L1PBa LINE L1 10 592 -6271 7652 99 43 26 chr12 61823437 61824747 -81961708 + L1PBa LINE L1 845 2176 -4687 429 294 96 27 chr12 61824850 61825069 -81961386 + MIR SINE MIR 3 241 -21 375 145 24 12 chr12 61825121 61825204 -81961251 + MSTA-int LTR MaLR 1568 1651 0 1737 135 193 14 chr12 61825204 61825567 -81960888 + MSTA LTR MaLR 1 428 0 2552 136 2 88 chr12 61825567 61826090 -81960365 + L1PA15 LINE L1 5688 6165 0 303 264 103 63 chr12 61826090 61826264 -81960191 + L1MC5 LINE L1 7732 7912 -49 42 71 0 0 chr12 61826266 61826350 -81960105 + AT_rich Low_complexity Low_complexity 1 84 0 2064 231 7 9 chr12 61826417 61826858 -81959597 + MLT1F LTR MaLR 1 440 -102 267 181 86 105 chr12 61826881 61826986 -81959469 - MLT2F LTR ERVL -20 444 342 769 136 126 35 chr12 61827114 61827312 -81959143 - MLT1E3 LTR MaLR -350 274 59 243 0 0 0 chr12 61827313 61827340 -81959115 + (TG)n Simple_repeat Simple_repeat 1 27 0 618 226 7 14 chr12 61827346 61827492 -81958963 - MLT2F LTR ERVL -517 146 2 387 209 9 36 chr12 61827493 61827603 -81958852 + MLT1F LTR MaLR 436 542 0 234 289 40 0 chr12 61828064 61828140 -81958315 + MIR SINE MIR 73 151 -111 353 289 0 0 chr12 61829694 61829784 -81956671 + L1MC4 LINE L1 6614 6703 -1339 311 301 21 0 chr12 61829708 61829801 -81956654 - L1MC4 LINE L1 -1339 6703 6609 * 2267 112 0 3 chr12 61830647 61830959 -81955496 + AluSq SINE Alu 1 311 -2 467 213 294 7 chr12 61830960 61831096 -81955359 - MER5B DNA MER1_type -3 175 1 479 214 29 10 chr12 61831376 61831479 -81954976 + MER5A DNA MER1_type 8 112 -77 1811 143 155 14 chr12 61831486 61831919 -81954536 + LTR54B LTR ERV1 3 496 -2 243 132 0 0 chr12 61832525 61832563 -81953892 - MER58B DNA MER1_type -20 321 284 2223 109 52 20 chr12 61832564 61832911 -81953544 + THE1B LTR MaLR 1 358 -6 688 148 26 0 chr12 61832934 61833049 -81953406 - MER58A DNA MER1_type 0 161 44 344 239 48 42 chr12 61833074 61833241 -81953214 + L1MC5 LINE L1 7711 7878 -83 941 206 29 0 chr12 61833244 61833414 -81953041 + MER5A DNA MER1_type 3 177 -12 189 0 0 0 chr12 61833849 61833870 -81952585 + (TG)n Simple_repeat Simple_repeat 2 22 0 4054 62 6 0 chr12 61833875 61834387 -81952068 - L1PA5 LINE L1 0 6154 5640 22403 88 10 8 chr12 61834477 61840615 -81945840 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr12 61841468 61841489 -81944966 + AT_rich Low_complexity Low_complexity 1 21 0 885 288 70 26 chr12 61841705 61842145 -81944310 - L2 LINE L2 -1 3312 2749 1700 171 42 3 chr12 61842586 61842873 -81943582 + AluJo SINE Alu 1 298 -14 1679 249 83 54 chr12 61842911 61843649 -81942806 - LTR41 LTR ERVL -12 761 3 498 338 103 5 chr12 61844056 61844269 -81942186 + MIR SINE MIR 5 238 -24 700 184 18 0 chr12 61844801 61844915 -81941540 + FLAM_C SINE Alu 1 116 -17 2361 104 0 0 chr12 61844929 61845227 -81941228 - AluSx SINE Alu -14 298 1 23 0 0 0 chr12 61845228 61845251 -81941204 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr12 61846289 61846339 -81940116 + AT_rich Low_complexity Low_complexity 1 50 0 234 0 0 0 chr12 61846504 61846530 -81939925 + (TG)n Simple_repeat Simple_repeat 1 26 0 1631 208 12 0 chr12 61847063 61847390 -81939065 + MER58B DNA MER1_type 1 331 -10 291 246 0 0 chr12 61847397 61847458 -81938997 + MIR SINE MIR 199 259 -3 232 79 53 0 chr12 61847792 61847830 -81938625 + MLT1I LTR MaLR 98 137 -272 449 254 83 42 chr12 61849507 61849747 -81936708 + MLT1I LTR MaLR 50 299 -110 1106 165 6 0 chr12 61850427 61850597 -81935858 + FAM SINE Alu 2 172 -3 180 0 0 0 chr12 61851348 61851368 -81935087 + (A)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr12 61851410 61851452 -81935003 + AT_rich Low_complexity Low_complexity 1 42 0 552 293 89 18 chr12 61851469 61851749 -81934706 + L1MC4a LINE L1 6459 6758 -1050 5973 93 29 6 chr12 61851749 61853464 -81932991 + L1PA8 LINE L1 4422 6171 -1 862 216 105 69 chr12 61853468 61853948 -81932507 + L1MC4 LINE L1 6749 7243 -733 669 254 74 63 chr12 61854124 61854743 -81931712 + L1MC5 LINE L1 7269 7894 -67 615 351 64 17 chr12 61855011 61855370 -81931085 - L2 LINE L2 0 3272 2897 1170 205 52 80 chr12 61855372 61855760 -81930695 + MLT2B1 LTR ERVL 1 480 -40 340 94 0 0 chr12 61855793 61855846 -81930609 + MLT2B1 LTR ERVL 464 516 -4 442 354 19 0 chr12 61855980 61856141 -81930314 - L2 LINE L2 -553 2761 2598 186 409 78 17 chr12 61856176 61856291 -81930164 + L2 LINE L2 3077 3198 -74 421 355 47 9 chr12 61856327 61856538 -81929917 - MIR SINE MIR -41 221 3 603 244 53 0 chr12 61857892 61858023 -81928432 + MIR SINE MIR 11 148 -114 316 100 0 0 chr12 61858024 61858074 -81928381 - MADE1 DNA Mariner -1 79 30 271 283 94 19 chr12 61858075 61858181 -81928274 + MIR SINE MIR 149 262 0 194 259 69 0 chr12 61859063 61859121 -81927334 + L2 LINE L2 3210 3271 -1 4387 68 0 0 chr12 61859412 61859972 -81926483 + L1PA7 LINE L1 5594 6153 -1 1492 150 39 14 chr12 61860247 61860533 -81925922 - MLT1A1 LTR MaLR -72 293 1 316 252 199 15 chr12 61860533 61860664 -81925791 + L1MEd LINE L1 695 849 -5270 500 213 113 0 chr12 61860664 61860824 -81925631 + L1ME3A LINE L1 5760 5937 -233 21 0 0 0 chr12 61861070 61861091 -81925364 + AT_rich Low_complexity Low_complexity 1 21 0 399 226 90 15 chr12 61861180 61861386 -81925069 + L1M2 LINE L1 5297 5517 -795 520 251 87 10 chr12 61861401 61861596 -81924859 + L1MC4a LINE L1 5563 5772 -349 260 275 84 8 chr12 61861651 61861782 -81924673 - MLT1L LTR MaLR -51 564 424 2546 26 10 3 chr12 61861806 61862108 -81924347 - AluY SINE Alu -7 304 1 344 264 8 41 chr12 61862190 61862311 -81924144 + MLT1H LTR MaLR 126 242 -307 376 185 67 67 chr12 61862397 61862532 -81923923 + MLT1H LTR MaLR 411 545 -4 314 263 30 98 chr12 61862542 61862804 -81923651 - MLT1L LTR MaLR -196 419 111 338 314 0 58 chr12 61862916 61863088 -81923367 + L1MC4a LINE L1 5772 5933 -1875 7070 58 6 2 chr12 61863549 61865149 -81921306 + L1PA8 LINE L1 4547 6160 -12 21 0 0 0 chr12 61865649 61865670 -81920785 + AT_rich Low_complexity Low_complexity 1 21 0 2096 107 10 0 chr12 61866281 61866579 -81919876 - AluSc SINE Alu -8 301 1 2267 74 20 7 chr12 61866604 61866903 -81919552 + AluSp SINE Alu 1 303 -10 218 348 143 30 chr12 61866985 61867476 -81918979 + L2 LINE L2 2342 2887 -427 1644 136 29 72 chr12 61867743 61868089 -81918366 - MER2 DNA MER2_type -14 331 1 251 296 41 20 chr12 61868090 61868188 -81918267 + MIR3 SINE MIR 103 202 -6 434 227 47 20 chr12 61868869 61869019 -81917436 + L1MD3 LINE L1 7831 7984 -11 1061 199 34 67 chr12 61869103 61869460 -81916995 + L1MC5 LINE L1 7232 7576 -385 28 0 0 0 chr12 61869498 61869526 -81916929 + AT_rich Low_complexity Low_complexity 1 28 0 53 69 0 0 chr12 61869570 61869672 -81916783 + AT_rich Low_complexity Low_complexity 1 102 0 1746 33 0 5 chr12 61870999 61871209 -81915246 + L1PA7 LINE L1 5939 6147 -7 191 355 13 0 chr12 61871251 61871327 -81915128 - L2 LINE L2 0 3272 3196 838 229 51 91 chr12 61871560 61871935 -81914520 + LTR16B LTR ERVL 105 464 0 921 227 22 0 chr12 61872242 61872427 -81914028 - ERVL LTR ERVL -2333 3431 3243 476 294 29 16 chr12 61872464 61872773 -81913682 - L1M4 LINE L1 -846 5300 4988 895 284 124 19 chr12 61872882 61873578 -81912877 - L1M4 LINE L1 -1300 4846 4078 1926 143 21 19 chr12 61873644 61874023 -81912432 + L1M1 LINE L1 5290 5669 -631 1024 122 0 0 chr12 61874023 61874162 -81912293 + AluSg SINE Alu 2 140 -170 37085 42 30 1 chr12 61874162 61879051 -81907404 + L1P LINE L1 6 5032 -1114 2474 244 88 54 chr12 61979138 61979920 -81806535 - L2 LINE L2 -1100 2214 1390 2115 113 0 0 chr12 61979920 61980230 -81806225 + AluSx SINE Alu 3 312 0 2474 244 88 54 chr12 61980230 61980440 -81806015 - L2 LINE L2 -1924 1390 1188 883 324 104 22 chr12 61980446 61981128 -81805327 - L2 LINE L2 -192 3080 2339 308 307 120 31 chr12 61981143 61981238 -81805217 - L2 LINE L2 -681 2633 2548 1713 144 0 0 chr12 61981238 61981495 -81804960 + AluSx SINE Alu 52 308 -4 308 307 120 31 chr12 61981495 61981591 -81804864 - L2 LINE L2 -766 2548 2425 2356 93 3 0 chr12 61981733 61982045 -81804410 - AluSp SINE Alu 0 313 1 478 321 30 0 chr12 61982212 61982343 -81804112 + L2 LINE L2 3137 3271 -1 2240 103 3 0 chr12 61982369 61982670 -81803785 - AluSq SINE Alu -11 302 1 1937 104 29 16 chr12 61983148 61983456 -81802999 + AluSx SINE Alu 1 312 0 23 68 0 0 chr12 61983582 61983626 -81802829 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chr12 61984619 61984662 -81801793 + (CAGCC)n Simple_repeat Simple_repeat 1 44 0 940 124 0 4 chr12 61986339 61986548 -81799907 + AluSx SINE Alu 3 292 -20 245 270 262 8 chr12 61986549 61986675 -81799780 + MIR SINE MIR 59 216 -46 1788 171 41 0 chr12 61988564 61988857 -81797598 - AluJb SINE Alu -7 305 1 773 148 16 16 chr12 61988857 61988985 -81797470 - AluJo SINE Alu -176 136 9 304 282 138 52 chr12 61993822 61993996 -81792459 + L1MCa LINE L1 1117 1305 -5121 267 296 242 11 chr12 61994056 61994242 -81792213 + MIR SINE MIR 3 231 -31 2520 74 0 0 chr12 61995332 61995643 -81790812 + AluY SINE Alu 1 311 0 563 309 129 10 chr12 61997378 61997885 -81788570 + L1MB8 LINE L1 5329 5906 -256 2130 108 4 0 chr12 61997924 61998226 -81788229 + AluSg SINE Alu 1 303 0 1166 168 40 40 chr12 61998250 61998476 -81787979 + AluJo SINE Alu 1 226 -86 705 158 0 0 chr12 61998483 61998584 -81787871 + AluJb SINE Alu 191 291 -21 400 294 178 67 chr12 61999075 61999446 -81787009 + L2 LINE L2 2858 3269 -3 791 218 50 61 chr12 62001079 62001283 -81785172 + MIR SINE MIR 5 207 -55 1979 103 31 21 chr12 62001283 62001574 -81784881 + AluSx SINE Alu 1 294 -18 791 218 50 61 chr12 62001574 62001630 -81784825 + MIR SINE MIR 207 262 0 527 254 164 21 chr12 62003693 62003882 -81782573 + MIR SINE MIR 46 261 -1 731 94 0 0 chr12 62004323 62004419 -81782036 + U6 snRNA snRNA 1 96 -11 490 153 12 0 chr12 62004603 62004688 -81781767 + MER4A LTR ERV1 579 664 0 2332 87 0 7 chr12 62004789 62005087 -81781368 - AluY SINE Alu -15 296 1 1596 188 0 4 chr12 62005125 62005396 -81781059 - AluJo SINE Alu -6 306 37 1911 120 0 34 chr12 62005424 62005716 -81780739 + AluJb SINE Alu 1 282 -30 243 0 0 0 chr12 62005721 62005748 -81780707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2374 90 0 3 chr12 62005751 62006051 -81780404 + AluSq SINE Alu 4 302 -11 1817 234 37 60 chr12 62006094 62006306 -81780149 + L2 LINE L2 2271 2486 -828 1970 125 3 54 chr12 62006306 62006619 -81779836 - AluJo SINE Alu -15 297 1 1817 234 37 60 chr12 62006619 62006876 -81779579 + L2 LINE L2 2486 2729 -585 1657 97 0 9 chr12 62006876 62007093 -81779362 - AluSq SINE Alu -17 296 82 1817 234 37 60 chr12 62007093 62007138 -81779317 + L2 LINE L2 2729 2774 -540 556 267 90 56 chr12 62007205 62007471 -81778984 + L2 LINE L2 3039 3313 0 212 270 108 0 chr12 62007537 62007611 -81778844 + L2 LINE L2 3180 3261 -52 474 254 177 19 chr12 62007747 62007956 -81778499 + L2 LINE L2 2828 3069 -203 2177 125 3 3 chr12 62009062 62009365 -81777090 - AluJb SINE Alu -3 309 7 335 238 89 50 chr12 62010296 62010397 -81776058 + L2 LINE L2 3209 3313 0 2183 75 0 69 chr12 62011609 62011928 -81774527 - AluSx SINE Alu -15 297 1 515 369 128 8 chr12 62012628 62013018 -81773437 - L2 LINE L2 -680 2634 2198 362 238 223 17 chr12 62013644 62013779 -81772676 - MIR SINE MIR -60 148 31 2410 110 0 0 chr12 62013782 62014083 -81772372 - AluSq SINE Alu -12 301 1 191 254 56 28 chr12 62014561 62014632 -81771823 - MER5C DNA MER1_type -27 297 225 2383 99 0 0 chr12 62014633 62014936 -81771519 + AluSx SINE Alu 1 303 -9 282 364 55 18 chr12 62015382 62015492 -81770963 + MER5B DNA MER1_type 65 178 0 209 200 22 0 chr12 62015818 62015863 -81770592 + L2 LINE L2 3254 3299 -14 906 270 180 37 chr12 62015876 62016597 -81769858 + L2 LINE L2 2437 3271 -1 2387 107 0 0 chr12 62016626 62016936 -81769519 + AluSg SINE Alu 1 310 0 2439 56 17 0 chr12 62017902 62018190 -81768265 - AluY SINE Alu -18 293 1 405 313 69 23 chr12 62018196 62018413 -81768042 - Charlie8 DNA MER1_type -2153 264 38 299 259 121 52 chr12 62019255 62019371 -81767084 + MIR SINE MIR 3 126 -136 494 191 62 183 chr12 62019376 62019425 -81767030 - MIR SINE MIR 0 262 209 2530 70 0 0 chr12 62019425 62019727 -81766728 - AluY SINE Alu -9 302 1 494 191 62 183 chr12 62019727 62019741 -81766714 - MIR SINE MIR -53 209 195 258 32 0 0 chr12 62019741 62019772 -81766683 + (TA)n Simple_repeat Simple_repeat 1 31 0 2306 95 3 3 chr12 62019774 62020068 -81766387 - AluSp SINE Alu -19 294 1 494 191 62 183 chr12 62020068 62020241 -81766214 - MIR SINE MIR -68 194 51 2198 115 26 3 chr12 62020279 62020584 -81765871 - AluSx SINE Alu 0 312 1 211 124 0 47 chr12 62020594 62020637 -81765818 + L2 LINE L2 3216 3297 -16 25 51 0 0 chr12 62021354 62021393 -81765062 + AT_rich Low_complexity Low_complexity 1 39 0 1199 128 0 0 chr12 62024487 62024666 -81761789 - Tigger3b DNA MER2_type -711 520 342 902 83 61 30 chr12 62024667 62024799 -81761656 - AluSg/x SINE Alu -8 301 166 1762 172 6 9 chr12 62024807 62025127 -81761328 - Tigger3b DNA MER2_type -912 319 1 208 215 123 62 chr12 62025149 62025214 -81761241 + MIR SINE MIR 160 228 -34 490 311 149 19 chr12 62026397 62026718 -81759737 + L2 LINE L2 2938 3300 -13 180 97 0 0 chr12 62026721 62026752 -81759703 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2113 92 50 0 chr12 62026853 62027135 -81759320 + AluSp SINE Alu 1 296 -17 2312 110 10 0 chr12 62027474 62027783 -81758672 - AluSx SINE Alu 0 312 1 475 230 40 102 chr12 62027783 62027844 -81758611 - L1MC4 LINE L1 -59 7983 7920 1677 197 10 0 chr12 62027844 62028139 -81758316 - AluJo SINE Alu -14 298 1 475 230 40 102 chr12 62028139 62028172 -81758283 - L1MC4 LINE L1 -122 7920 7887 2173 81 20 13 chr12 62028172 62028470 -81757985 - AluSx SINE Alu -12 300 1 475 230 40 102 chr12 62028470 62028600 -81757855 - L1MC4 LINE L1 -155 7887 7772 712 207 0 9 chr12 62028618 62028734 -81757721 - AluSg/x SINE Alu -60 250 136 465 223 165 41 chr12 62028864 62029106 -81757349 + L1MC4a LINE L1 5898 6169 -1639 2471 93 0 0 chr12 62029119 62029420 -81757035 + AluSq SINE Alu 1 301 -12 805 154 31 8 chr12 62029423 62029553 -81756902 + AluSq/x SINE Alu 1 133 -180 292 139 0 0 chr12 62029577 62029620 -81756835 - Alu SINE Alu -258 43 1 400 241 110 39 chr12 62029653 62029935 -81756520 + L1MC4a LINE L1 6162 6463 -1345 856 231 81 90 chr12 62029986 62030061 -81756394 + L1MC4 LINE L1 6650 6724 -1303 2385 95 0 19 chr12 62030061 62030376 -81756079 + AluSg SINE Alu 1 309 -1 856 231 81 90 chr12 62030376 62030635 -81755820 + L1MC4 LINE L1 6724 7012 -1015 314 203 0 0 chr12 62030754 62030813 -81755642 - FRAM/FAM SINE Alu -90 76 18 2004 151 3 7 chr12 62030875 62031167 -81755288 + AluJb SINE Alu 1 291 -21 2267 101 0 0 chr12 62031171 62031458 -81754997 + AluSc SINE Alu 3 289 -20 3126 172 55 12 chr12 62031474 62032159 -81754296 + Charlie1 DNA MER1_type 1556 2270 -491 1129 161 29 95 chr12 62032167 62032450 -81754005 + AluJo SINE Alu 86 352 0 709 169 8 0 chr12 62032506 62032624 -81753831 - FLAM_A SINE Alu -6 136 18 24 0 0 0 chr12 62033070 62033094 -81753361 + GC_rich Low_complexity Low_complexity 1 24 0 378 183 15 131 chr12 62033378 62033468 -81752987 - HAL1 LINE L1 -900 1607 1537 1914 148 0 17 chr12 62033468 62033766 -81752689 - AluJo SINE Alu -15 297 5 378 183 15 131 chr12 62033766 62033812 -81752643 - HAL1 LINE L1 -970 1537 1487 6539 93 13 13 chr12 62033839 62034845 -81751610 - L1MA2 LINE L1 0 6304 5299 769 216 83 36 chr12 62034975 62035276 -81751179 + HAL1 LINE L1 1193 1507 -1000 2727 125 4 7 chr12 62035345 62035801 -81750654 + L1 LINE L1 4559 5013 -1133 2343 101 0 3 chr12 62035803 62036111 -81750344 + AluY SINE Alu 1 307 -4 745 157 10 91 chr12 62036112 62036189 -81750266 + L1M4b LINE L1 100 182 -6677 1661 159 76 11 chr12 62036189 62036466 -81749989 - AluJo SINE Alu -17 295 1 745 157 10 91 chr12 62036466 62036586 -81749869 + L1M4b LINE L1 182 281 -6578 311 277 119 30 chr12 62036700 62036801 -81749654 + L1M4b LINE L1 371 480 -6379 695 136 10 0 chr12 62036920 62037023 -81749432 - AluSq/x SINE Alu -204 109 6 2180 128 6 3 chr12 62037032 62037344 -81749111 - AluSq SINE Alu 0 313 1 232 184 20 0 chr12 62037360 62037409 -81749046 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 1718 172 7 14 chr12 62037539 62037824 -81748631 + AluJo SINE Alu 11 293 -19 303 192 128 0 chr12 62037838 62037916 -81748539 + L1M4b LINE L1 11 98 -6761 2232 94 0 10 chr12 62039269 62039567 -81746888 - AluY SINE Alu -16 295 1 * 2302 90 3 0 chr12 62039567 62039867 -81746588 - AluSg SINE Alu -9 301 1 1035 143 24 6 chr12 62039973 62040141 -81746314 + AluSg/x SINE Alu 130 300 -12 204 317 39 39 chr12 62041637 62041741 -81744714 - MIR SINE MIR -57 151 48 340 349 40 20 chr12 62042784 62042933 -81743522 - L2 LINE L2 -7 3306 3155 2037 105 14 7 chr12 62043367 62043652 -81742803 - AluSq SINE Alu -26 287 1 247 241 0 0 chr12 62043975 62044033 -81742422 + CT-rich Low_complexity Low_complexity 3 60 0 2416 90 0 0 chr12 62044450 62044762 -81741693 - AluSx SINE Alu 0 312 1 713 218 0 0 chr12 62044763 62044887 -81741568 - FLAM_A SINE Alu -6 127 4 400 244 219 0 chr12 62045181 62045345 -81741110 - MIR SINE MIR 0 262 63 457 326 50 60 chr12 62046585 62046803 -81739652 - MIR SINE MIR -14 248 33 2113 93 4 4 chr12 62046885 62047187 -81739268 - AluSx SINE Alu 0 307 6 2437 83 3 0 chr12 62047196 62047508 -81738947 - AluSq SINE Alu 0 313 1 420 231 48 10 chr12 62047509 62047613 -81738842 + LTR19C LTR ERV1 672 779 0 2109 113 0 7 chr12 62047633 62047925 -81738530 - AluSc SINE Alu -19 290 1 600 82 8 74 chr12 62047945 62048067 -81738388 + PABL_A-int LTR ERV1 499 612 -4403 2243 99 0 3 chr12 62048069 62048371 -81738084 - AluSq SINE Alu -12 301 1 3561 85 43 17 chr12 62048371 62049019 -81737436 + PABL_A-int LTR ERV1 1831 2495 -4103 904 142 126 85 chr12 62049019 62049266 -81737189 - LTR8 LTR ERV1 -434 257 1 1035 80 24 5 chr12 62049266 62049320 -81737135 + PABL_A-int LTR ERV1 2737 2789 -3809 2044 146 0 13 chr12 62049320 62049635 -81736820 + AluSx SINE Alu 1 311 -1 1035 80 24 5 chr12 62049635 62049793 -81736662 + PABL_A-int LTR ERV1 2789 2953 -3645 698 236 51 36 chr12 62053841 62054036 -81732419 + MIR SINE MIR 22 219 -43 2351 62 20 3 chr12 62054072 62054376 -81732079 - AluSg SINE Alu 0 310 2 240 111 0 0 chr12 62054377 62054413 -81732042 + (T)n Simple_repeat Simple_repeat 1 36 0 313 197 0 15 chr12 62054438 62054504 -81731951 + L2 LINE L2 3248 3312 -1 35 54 0 0 chr12 62055946 62056002 -81730453 + GC_rich Low_complexity Low_complexity 1 56 0 27 87 0 0 chr12 62056094 62056163 -81730292 + GC_rich Low_complexity Low_complexity 1 69 0 26 64 0 0 chr12 62056391 62056438 -81730017 + GC_rich Low_complexity Low_complexity 1 47 0 238 267 14 34 chr12 62056652 62056772 -81729683 + G-rich Low_complexity Low_complexity 5 202 0 198 171 0 0 chr12 62058449 62058490 -81727965 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1514 198 42 3 chr12 62061171 62061454 -81725001 - AluJo SINE Alu -18 294 1 1428 165 28 20 chr12 62061543 62061746 -81724709 - AluJo SINE Alu 0 339 132 2139 117 0 0 chr12 62061746 62062036 -81724419 - AluSc SINE Alu -18 291 2 1428 165 28 20 chr12 62062036 62062143 -81724312 - AluJo SINE Alu -207 132 27 2410 93 0 0 chr12 62062748 62063059 -81723396 + AluSx SINE Alu 1 311 -1 2288 91 3 0 chr12 62063712 62064009 -81722446 + AluSx SINE Alu 1 298 -14 926 147 52 31 chr12 62067715 62067906 -81718549 + MIR SINE MIR 68 262 0 1995 89 3 21 chr12 62068087 62068369 -81718086 - AluSx SINE Alu -17 295 19 197 0 0 67 chr12 62068633 62068663 -81717792 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 230 221 179 43 chr12 62068697 62068837 -81717618 + MIR SINE MIR 103 261 -1 1115 137 0 0 chr12 62068930 62069098 -81717357 - AluSg/x SINE Alu -8 304 137 243 146 0 0 chr12 62070270 62070311 -81716144 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chr12 62071116 62071139 -81715316 + (TAA)n Simple_repeat Simple_repeat 2 24 0 219 362 0 0 chr12 62073114 62073208 -81713247 + C-rich Low_complexity Low_complexity 2 95 0 252 211 41 75 chr12 62073282 62073429 -81713026 + G-rich Low_complexity Low_complexity 2 143 0 208 224 0 17 chr12 62073579 62073637 -81712818 + (CCG)n Simple_repeat Simple_repeat 2 58 0 204 40 0 0 chr12 62074210 62074235 -81712220 + (CCG)n Simple_repeat Simple_repeat 1 25 0 183 184 0 0 chr12 62076444 62076482 -81709973 + CT-rich Low_complexity Low_complexity 2 39 0 198 91 0 0 chr12 62076726 62076759 -81709696 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr12 62078537 62078566 -81707889 + (CA)n Simple_repeat Simple_repeat 2 30 0 181 269 185 46 chr12 62079464 62079572 -81706883 + MIR3 SINE MIR 2 124 -84 804 178 198 5 chr12 62081405 62081602 -81704853 + MIR SINE MIR 4 238 -24 21 0 0 0 chr12 62081619 62081640 -81704815 + AT_rich Low_complexity Low_complexity 1 21 0 617 247 52 6 chr12 62081665 62081829 -81704626 - MIR SINE MIR -61 147 17 2369 64 0 52 chr12 62082547 62082875 -81703580 - AluY SINE Alu 0 311 1 387 306 0 7 chr12 62083216 62083363 -81703092 + CT-rich Low_complexity Low_complexity 2 147 0 217 193 34 57 chr12 62085979 62086067 -81700388 + G-rich Low_complexity Low_complexity 1 86 0 180 0 0 0 chr12 62086395 62086415 -81700040 + (T)n Simple_repeat Simple_repeat 1 20 0 264 263 53 0 chr12 62086882 62086958 -81699497 + MIR SINE MIR 15 94 -168 510 287 36 18 chr12 62088583 62088750 -81697705 - MIR SINE MIR -4 258 89 2396 78 10 3 chr12 62089039 62089347 -81697108 - AluSx SINE Alu -2 310 1 1073 137 24 6 chr12 62089452 62089620 -81696835 + AluSg/x SINE Alu 130 300 -12 294 295 0 0 chr12 62092264 62092342 -81694113 - L2 LINE L2 -7 3265 3188 2096 105 14 7 chr12 62092847 62093132 -81693323 - AluSq SINE Alu -26 287 1 247 241 0 0 chr12 62093457 62093515 -81692940 + CT-rich Low_complexity Low_complexity 3 60 0 2457 92 0 0 chr12 62093932 62094237 -81692218 - AluSx SINE Alu -7 305 1 704 218 0 0 chr12 62094238 62094362 -81692093 - FLAM_A SINE Alu -6 127 4 363 244 219 0 chr12 62094656 62094820 -81691635 - MIR SINE MIR 0 262 63 376 326 50 60 chr12 62096061 62096279 -81690176 - MIR SINE MIR -14 248 33 266 261 8 34 chr12 62096309 62096361 -81690094 + (TATATG)n Simple_repeat Simple_repeat 1 53 -63 2176 109 3 0 chr12 62096361 62096667 -81689788 - AluSx SINE Alu 0 307 1 266 261 8 34 chr12 62096667 62096732 -81689723 + (TATATG)n Simple_repeat Simple_repeat 53 116 0 1685 172 7 14 chr12 62096862 62097147 -81689308 + AluJo SINE Alu 11 293 -19 6606 187 57 54 chr12 62097161 62097244 -81689211 + L1MC4a LINE L1 11 92 -6767 2356 86 7 0 chr12 62097244 62097545 -81688910 + AluSp SINE Alu 1 303 -10 6606 187 57 54 chr12 62097545 62097629 -81688826 + L1MC4a LINE L1 92 174 -6685 1629 159 76 11 chr12 62097629 62097906 -81688549 - AluJo SINE Alu -17 295 1 6606 187 57 54 chr12 62097906 62099253 -81687202 + L1MC4a LINE L1 174 1530 -5329 1337 226 26 33 chr12 62099227 62099657 -81686798 + L1MC4a LINE L1 3561 3987 -2970 * 800 156 0 15 chr12 62099806 62099941 -81686514 - FLAM_C SINE Alu 0 133 1 611 255 108 48 chr12 62099953 62100103 -81686352 + L1MC4a LINE L1 5652 5792 -2016 2460 80 0 3 chr12 62100103 62100405 -81686050 + AluSc SINE Alu 1 301 -8 611 255 108 48 chr12 62100405 62100669 -81685786 + L1MC4a LINE L1 5792 6091 -1717 2354 107 3 0 chr12 62100672 62100980 -81685475 - AluSx SINE Alu -1 311 3 2277 123 0 0 chr12 62101353 62101661 -81684794 + AluSg SINE Alu 1 308 -2 273 265 15 0 chr12 62101670 62101738 -81684717 + L1MC4a LINE L1 4588 4656 -2301 322 248 263 40 chr12 62101763 62102242 -81684213 + L1M4 LINE L1 2464 3049 -3097 1037 262 71 74 chr12 62102264 62102863 -81683592 + L1MC4a LINE L1 6032 6104 -853 1778 172 21 0 chr12 62102863 62103154 -81683301 - AluJo SINE Alu -15 297 1 1037 262 71 74 chr12 62103154 62103204 -81683251 + L1MC4a LINE L1 6104 6153 -804 27 51 0 17 chr12 62103377 62103409 -81683046 + AT_rich Low_complexity Low_complexity 1 33 -25 1651 174 3 11 chr12 62103409 62103696 -81682759 - AluJo SINE Alu -27 285 1 27 51 0 17 chr12 62103696 62103722 -81682733 + AT_rich Low_complexity Low_complexity 33 58 0 1216 98 0 0 chr12 62103805 62103958 -81682497 + AluSp SINE Alu 1 153 -160 1638 151 81 0 chr12 62103962 62104246 -81682209 + MSTA LTR MaLR 122 428 0 1600 279 114 63 chr12 62104267 62104640 -81681815 + L1M4 LINE L1 3171 3523 -2623 1555 168 42 36 chr12 62104640 62104949 -81681506 - AluJb SINE Alu -1 311 1 1600 279 114 63 chr12 62104949 62105695 -81680760 + L1M4 LINE L1 3523 4229 -1917 1779 149 41 3 chr12 62105695 62105990 -81680465 + AluSx SINE Alu 1 306 -6 1600 279 114 63 chr12 62105990 62106878 -81679577 + L1M4 LINE L1 4229 5282 -864 * 2197 202 29 41 chr12 62106877 62106970 -81679485 + L1MB4 LINE L1 3623 3716 -2430 2292 109 0 0 chr12 62106970 62107263 -81679192 - AluSx SINE Alu -18 294 2 2197 202 29 41 chr12 62107263 62107729 -81678726 + L1MB4 LINE L1 3716 4175 -1971 1945 167 18 53 chr12 62107726 62108120 -81678335 + L1MB4 LINE L1 4606 4983 -1163 * 693 203 8 8 chr12 62108120 62108248 -81678207 + FLAM_A SINE Alu 1 128 -5 1945 167 18 53 chr12 62108248 62108307 -81678148 + L1MB4 LINE L1 4983 5043 -1103 946 96 0 0 chr12 62108343 62108468 -81677987 + AluSp/q SINE Alu 181 305 -8 4594 140 68 26 chr12 62108468 62109418 -81677037 + L1MB4 LINE L1 5190 6180 0 2257 92 7 0 chr12 62109424 62109735 -81676720 + AluSq SINE Alu 1 313 0 411 247 149 23 chr12 62109751 62109943 -81676512 + L1M4 LINE L1 5600 5812 -362 2458 96 0 3 chr12 62109943 62110256 -81676199 + AluSx SINE Alu 1 312 0 2402 88 10 0 chr12 62111399 62111705 -81674750 - AluSx SINE Alu -2 310 2 733 325 136 34 chr12 62111905 62113131 -81673324 + L2 LINE L2 1880 3255 -17 539 261 78 6 chr12 62113332 62113512 -81672943 - L2 LINE L2 -1 3312 3120 621 106 0 0 chr12 62113553 62113657 -81672798 + (TG)n Simple_repeat Simple_repeat 2 105 0 256 301 219 0 chr12 62113913 62114036 -81672419 - L2 LINE L2 -301 3012 2863 1361 169 94 3 chr12 62114037 62114356 -81672099 + L2 LINE L2 2238 2585 -729 437 243 0 19 chr12 62114513 62114620 -81671835 - MER63 DNA MER1_type -331 731 1 314 26 0 0 chr12 62114863 62114901 -81671554 - AluY SINE Alu -264 38 1 2451 92 0 0 chr12 62114916 62115221 -81671234 - AluSx SINE Alu -7 305 1 606 279 45 20 chr12 62116295 62116542 -81669913 - L2 LINE L2 -15 3298 3046 697 157 0 0 chr12 62118169 62118284 -81668171 + FLAM_A SINE Alu 1 115 -18 471 35 0 0 chr12 62118291 62118348 -81668107 + (CATA)n Simple_repeat Simple_repeat 3 59 0 416 221 0 0 chr12 62118393 62118479 -81667976 + HAL1 LINE L1 120 205 -2302 1575 241 86 64 chr12 62118522 62118844 -81667611 + HAL1 LINE L1 648 962 -1545 2099 127 0 0 chr12 62118844 62119136 -81667319 + AluSx SINE Alu 1 292 -20 1575 241 86 64 chr12 62119136 62119655 -81666800 + HAL1 LINE L1 962 1507 -1000 7425 108 12 18 chr12 62119724 62120182 -81666273 + L1MA2 LINE L1 4559 5018 -1286 2616 65 0 0 chr12 62120182 62120489 -81665966 + AluY SINE Alu 1 307 -4 7425 108 12 18 chr12 62120489 62121791 -81664664 + L1MA2 LINE L1 5018 6304 0 1880 141 0 24 chr12 62121864 62122162 -81664293 + AluJo SINE Alu 5 295 -17 387 214 22 0 chr12 62122163 62122252 -81664203 + HAL1 LINE L1 1517 1607 -900 466 200 9 0 chr12 62122256 62122366 -81664089 - L1MA4A LINE L1 -4 6299 6189 5116 147 16 13 chr12 62122366 62123570 -81662885 - L1PB4 LINE L1 -98 6058 4859 1377 139 0 24 chr12 62123570 62123779 -81662676 - AluJo SINE Alu -24 288 85 3842 162 19 39 chr12 62123779 62123815 -81662640 - L1PB4 LINE L1 -1258 4888 4853 1819 163 3 23 chr12 62123815 62124116 -81662339 + AluJb SINE Alu 1 295 -17 3842 162 19 39 chr12 62124116 62124756 -81661699 - L1PB4 LINE L1 -1293 4853 4228 2295 97 3 3 chr12 62124756 62125055 -81661400 + AluSp SINE Alu 2 300 -13 3842 162 19 39 chr12 62125055 62125172 -81661283 - L1PB4 LINE L1 -1918 4228 4110 1092 278 66 51 chr12 62125161 62125647 -81660808 + HAL1 LINE L1 1589 2081 -426 * 319 287 44 33 chr12 62125652 62125833 -81660622 + L1MEd LINE L1 87 269 -5936 180 0 0 0 chr12 62126270 62126290 -81660165 + (CA)n Simple_repeat Simple_repeat 1 20 0 382 215 43 86 chr12 62126299 62126462 -81659993 + L1MEd LINE L1 818 973 -5232 21 57 0 0 chr12 62126462 62126497 -81659958 + AT_rich Low_complexity Low_complexity 1 35 0 365 195 0 0 chr12 62126543 62126620 -81659835 - L1 LINE L1 -1854 4292 4216 * 5737 144 27 23 chr12 62126618 62128415 -81658040 + L1PB2 LINE L1 4332 6150 -1 2146 100 0 47 chr12 62128425 62128726 -81657729 + AluSq SINE Alu 4 290 -23 202 211 0 0 chr12 62128732 62128784 -81657671 + A-rich Low_complexity Low_complexity 1 52 0 317 289 78 0 chr12 62128792 62128920 -81657535 + L1MC5 LINE L1 7085 7222 -739 784 196 154 45 chr12 62129048 62129098 -81657357 + L1MC5 LINE L1 7260 7303 -658 1858 168 0 0 chr12 62129098 62129396 -81657059 - AluSx SINE Alu -14 298 1 784 196 154 45 chr12 62129396 62129703 -81656752 + L1MC5 LINE L1 7303 7656 -305 510 127 53 6 chr12 62129703 62129851 -81656604 + AluSx SINE Alu 2 248 -62 1081 130 12 110 chr12 62129851 62130097 -81656358 + AluSx SINE Alu 85 306 -6 790 199 64 45 chr12 62130098 62130364 -81656091 + L1MC5 LINE L1 7654 7924 -37 552 283 95 29 chr12 62130381 62130525 -81655930 + L1MEd LINE L1 1053 1186 -5143 2281 97 23 0 chr12 62130525 62130824 -81655631 + AluSc SINE Alu 1 306 -3 552 283 95 29 chr12 62130824 62131037 -81655418 + L1MEd LINE L1 1186 1467 -4862 370 238 0 12 chr12 62131042 62131126 -81655329 + L1ME2 LINE L1 6068 6150 -14 * 404 271 57 24 chr12 62131123 62131322 -81655133 + L1MEd LINE L1 1432 1640 -4756 798 131 15 0 chr12 62131322 62131452 -81655003 + FLAM_C SINE Alu 2 133 0 426 168 137 11 chr12 62131602 62131697 -81654758 + LTR50 LTR ERVL 1 107 -688 6076 131 9 21 chr12 62131699 62132675 -81653780 - L1MC1 LINE L1 0 6333 5370 2065 122 37 7 chr12 62132676 62132972 -81653483 - AluSx SINE Alu -7 305 1 1055 131 48 146 chr12 62132973 62133241 -81653214 + MLT2B1 LTR ERVL 279 520 0 340 176 14 0 chr12 62133241 62133315 -81653140 - L1MC1 LINE L1 -848 5298 5224 567 181 0 0 chr12 62133315 62133431 -81653024 + (TA)n Simple_repeat Simple_repeat 2 117 0 1431 161 34 21 chr12 62133431 62133571 -81652884 - AluJo SINE Alu -39 273 126 2178 86 11 4 chr12 62133571 62133897 -81652558 - AluSg SINE Alu 0 328 1 1431 161 34 21 chr12 62133897 62133991 -81652464 - AluJo SINE Alu -186 126 35 3904 209 43 26 chr12 62133991 62135015 -81651440 - L1MC1 LINE L1 -915 5231 4191 790 258 138 9 chr12 62135015 62135502 -81650953 + LTR50 LTR ERVL 94 795 0 2481 66 3 3 chr12 62135687 62135992 -81650463 + AluY SINE Alu 1 305 -6 3281 204 48 43 chr12 62137138 62138028 -81648427 + L1M4 LINE L1 3561 4455 -1691 710 98 0 18 chr12 62138031 62138143 -81648312 + AluSq/x SINE Alu 2 111 -201 917 129 30 28 chr12 62138249 62138450 -81648005 - MER4A LTR ERV1 -144 520 261 2698 108 66 5 chr12 62138477 62138886 -81647569 - MER57B LTR ERV1 0 434 1 1665 81 123 0 chr12 62138886 62139121 -81647334 - MER57B-int LTR ERV1 0 7537 7274 581 176 59 8 chr12 62139121 62139240 -81647215 - LTR54B LTR ERV1 -369 129 5 1257 98 0 0 chr12 62139240 62139403 -81647052 - MER57B-int LTR ERV1 -387 7150 6988 6983 68 6 280 chr12 62139454 62141360 -81645095 - SVA Other Other 0 1386 3 10946 101 41 2 chr12 62141362 62142992 -81643463 - MER57B-int LTR ERV1 -537 7000 5307 5587 183 61 29 chr12 62142995 62143112 -81643343 - MER57B-int LTR ERV1 -1706 3309 3197 1627 138 71 32 chr12 62143112 62143395 -81643060 + AluSq SINE Alu 1 294 -19 5587 183 61 29 chr12 62143395 62145158 -81641297 - MER57B-int LTR ERV1 -1818 3197 1492 2100 117 14 0 chr12 62145158 62145440 -81641015 - AluSc SINE Alu -23 286 1 5587 183 61 29 chr12 62145440 62146101 -81640354 - MER57B-int LTR ERV1 -3523 1492 1672 2198 113 27 0 chr12 62146101 62146393 -81640062 + AluSg SINE Alu 1 300 -10 5587 183 61 29 chr12 62146393 62146522 -81639933 - MER57B-int LTR ERV1 -3342 1673 1550 2783 142 111 33 chr12 62146495 62146732 -81639723 - MER57B-int LTR ERV1 -5074 872 655 * 186 43 0 0 chr12 62146732 62146755 -81639700 + (GA)n Simple_repeat Simple_repeat 1 23 0 2783 142 111 33 chr12 62146755 62147060 -81639395 - MER57B-int LTR ERV1 -5291 655 288 2189 106 6 39 chr12 62147062 62147374 -81639081 - AluSc SINE Alu -7 302 1 4262 134 26 1 chr12 62147376 62148032 -81638423 - MER57B-int LTR ERV1 -6865 672 1 2914 121 12 5 chr12 62148032 62148463 -81637992 - MER57B LTR ERV1 0 434 1 328 123 55 41 chr12 62148465 62148538 -81637917 - MER4A LTR ERV1 -589 75 2 749 136 0 30 chr12 62148540 62148672 -81637783 - MER4A-int LTR ERV1 0 6598 6471 4414 139 165 109 chr12 62148676 62150210 -81636245 - pTR5 LTR ERV1 -1 2437 743 15034 100 46 26 chr12 62150210 62150640 -81635815 - MER4A-int LTR ERV1 -124 6474 6054 2492 93 0 0 chr12 62150640 62150950 -81635505 - AluY SINE Alu -1 310 1 15034 100 46 26 chr12 62150950 62152247 -81634208 - MER4A-int LTR ERV1 -544 6054 4679 2057 139 0 7 chr12 62152247 62152541 -81633914 - AluSx SINE Alu -20 292 1 15034 100 46 26 chr12 62152541 62153305 -81633150 - MER4A-int LTR ERV1 -1919 4679 3932 41493 33 23 1 chr12 62153306 62159325 -81627130 - L1PA2 LINE L1 -1 6154 2 986 215 34 44 chr12 62159331 62159384 -81627071 - MER4B-int LTR ERV1 -495 4385 4333 2229 110 17 0 chr12 62159384 62159683 -81626772 + AluSp SINE Alu 1 304 -9 986 215 34 44 chr12 62159683 62160095 -81626360 - MER4B-int LTR ERV1 -547 4333 1828 734 302 214 22 chr12 62160303 62160995 -81625460 + L2 LINE L2 1798 2622 -692 1745 73 0 34 chr12 62161031 62161265 -81625190 - AluSx SINE Alu -14 298 73 4024 178 42 54 chr12 62161265 62162230 -81624225 - LTR13 LTR ERVK 0 954 1 554 117 0 0 chr12 62162230 62162307 -81624148 - AluSx SINE Alu -235 78 2 1449 137 9 0 chr12 62162307 62162526 -81623929 - AluSg/x SINE Alu -7 303 83 1919 51 4 47 chr12 62162565 62162819 -81623636 - AluSx SINE Alu -69 243 1 398 292 74 85 chr12 62162821 62163184 -81623271 + L2 LINE L2 2914 3272 0 204 194 0 0 chr12 62163522 62163558 -81622897 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 250 224 104 0 chr12 62165325 62165392 -81621063 + L3b LINE CR1 1293 1366 -217 296 300 46 46 chr12 62165440 62165570 -81620885 - L2 LINE L2 0 3272 3143 279 0 0 0 chr12 62166068 62166099 -81620356 + (T)n Simple_repeat Simple_repeat 1 31 0 544 230 52 103 chr12 62166961 62167079 -81619376 + MIR SINE MIR 58 162 -100 2213 107 6 22 chr12 62167079 62167396 -81619059 + AluSx SINE Alu 1 312 0 544 230 52 103 chr12 62167396 62167490 -81618965 + MIR SINE MIR 162 259 -3 2321 106 7 0 chr12 62167814 62168115 -81618340 + AluSx SINE Alu 1 303 -9 2352 106 3 0 chr12 62168595 62168906 -81617549 + AluSp SINE Alu 1 312 -1 988 302 143 59 chr12 62169038 62170455 -81616000 - L2 LINE L2 -5 3267 1723 857 129 0 0 chr12 62170473 62170589 -81615866 - FLAM_A SINE Alu -14 128 13 2237 108 3 13 chr12 62170630 62170936 -81615519 + AluSx SINE Alu 1 303 -9 1951 132 43 16 chr12 62172166 62172470 -81613985 + AluJo SINE Alu 1 312 0 23 0 0 0 chr12 62175829 62175852 -81610603 + AT_rich Low_complexity Low_complexity 1 23 0 239 290 0 0 chr12 62177267 62177360 -81609095 + C-rich Low_complexity Low_complexity 1 93 0 222 265 0 0 chr12 62179667 62179716 -81606739 + C-rich Low_complexity Low_complexity 6 54 0 362 342 117 29 chr12 62180469 62180776 -81605679 + L3b LINE CR1 1120 1453 -130 23 33 0 0 chr12 62182158 62182188 -81604267 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 62184046 62184078 -81602377 + GC_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr12 62184204 62184235 -81602220 + GC_rich Low_complexity Low_complexity 1 31 0 32 26 0 0 chr12 62184250 62184289 -81602166 + GC_rich Low_complexity Low_complexity 1 39 0 186 275 0 0 chr12 62184513 62184553 -81601902 + L3 LINE CR1 1529 1568 -9 758 173 24 0 chr12 62189879 62190006 -81596449 - FLAM_C SINE Alu -3 130 1 2117 119 6 3 chr12 62190922 62191233 -81595222 - AluSx SINE Alu 0 312 1 216 207 17 17 chr12 62199474 62199532 -81586923 + MIR SINE MIR 88 145 -63 662 38 0 0 chr12 62199715 62199794 -81586661 + L1PA5 LINE L1 6069 6147 -7 26 0 0 0 chr12 62199794 62199820 -81586635 + AT_rich Low_complexity Low_complexity 1 26 0 263 255 216 10 chr12 62200871 62200973 -81585482 - L2 LINE L2 0 3313 3191 391 193 129 57 chr12 62201595 62201735 -81584720 - L2 LINE L2 -5 3308 3159 * 586 262 105 9 chr12 62201729 62201939 -81584516 - MIR SINE MIR 0 262 33 490 263 12 62 chr12 62202011 62202171 -81584284 - L2 LINE L2 -275 3038 2887 209 182 0 55 chr12 62204535 62204590 -81581865 + GA-rich Low_complexity Low_complexity 2 53 0 25 31 0 0 chr12 62204883 62204915 -81581540 + GC_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr12 62206210 62206230 -81580225 + (TG)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 62206326 62206348 -81580107 + AT_rich Low_complexity Low_complexity 1 22 0 1636 154 40 33 chr12 62206384 62206683 -81579772 + AluJb SINE Alu 3 303 -9 1151 135 0 55 chr12 62206686 62206886 -81579569 + AluSg/x SINE Alu 124 312 0 674 137 51 0 chr12 62206886 62207003 -81579452 + L1MC4 LINE L1 7544 7666 -376 782 195 0 0 chr12 62207047 62207170 -81579285 + AluJo SINE Alu 2 124 -188 775 183 0 0 chr12 62207170 62207301 -81579154 - FLAM_C SINE Alu -2 141 11 1034 147 0 58 chr12 62207309 62207499 -81578956 + AluJo SINE Alu 116 294 -18 490 211 72 13 chr12 62207548 62207700 -81578755 + L1MC4 LINE L1 7744 7904 -138 37 69 0 0 chr12 62207744 62207816 -81578639 + AT_rich Low_complexity Low_complexity 1 72 0 378 234 62 0 chr12 62207820 62207948 -81578507 + L1MC4 LINE L1 7907 8042 0 2209 99 3 0 chr12 62207998 62208300 -81578155 + AluSq SINE Alu 1 303 -10 751 187 84 6 chr12 62208549 62208715 -81577740 - AluJb SINE Alu -17 295 117 869 222 20 5 chr12 62208869 62209067 -81577388 - MER2 DNA MER2_type -141 204 4 566 277 49 8 chr12 62209348 62209545 -81576910 + MER20B DNA MER1_type 14 219 0 2074 127 0 3 chr12 62209637 62209936 -81576519 - AluSx SINE Alu -12 300 3 2347 61 0 3 chr12 62210338 62210635 -81575820 + AluY SINE Alu 1 296 -15 236 310 0 0 chr12 62211054 62211112 -81575343 - L2 LINE L2 -1 3312 3255 761 280 119 12 chr12 62211242 62211741 -81574714 - L2 LINE L2 0 3313 2746 838 141 15 30 chr12 62211790 62211925 -81574530 + AluSq/x SINE Alu 2 134 -179 2296 89 0 3 chr12 62211925 62212227 -81574228 + AluSq SINE Alu 1 301 -12 1788 131 20 22 chr12 62212325 62212675 -81573780 - MER4A LTR ERV1 0 664 257 2767 113 61 0 chr12 62212698 62213107 -81573348 - MER57B LTR ERV1 0 434 1 1554 81 123 0 chr12 62213107 62213342 -81573113 - MER57B-int LTR ERV1 0 7537 7274 559 180 49 8 chr12 62213342 62213464 -81572991 - LTR54B LTR ERV1 -369 129 3 1151 117 12 0 chr12 62213464 62213635 -81572820 - MER57-int LTR ERV1 -390 7147 6975 6161 120 10 63 chr12 62213674 62214907 -81571548 - SVA Other Other -839 1386 364 1732 110 80 4 chr12 62214907 62215170 -81571285 + AluSq SINE Alu 20 302 -11 6161 120 10 63 chr12 62215170 62215459 -81570996 - SVA Other Other -1861 364 61 197 119 24 0 chr12 62215469 62215511 -81570944 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3109 170 52 12 chr12 62215511 62216186 -81570269 + Charlie1 DNA MER1_type 1577 2278 -483 1059 161 29 95 chr12 62216186 62216473 -81569982 + AluJo SINE Alu 86 356 0 722 185 0 0 chr12 62216529 62216648 -81569807 - FLAM_A SINE Alu -6 136 18 1897 147 3 7 chr12 62216710 62217002 -81569453 + AluJb SINE Alu 1 291 -21 2303 90 0 0 chr12 62217006 62217306 -81569149 + AluSc SINE Alu 3 302 -7 2478 48 0 10 chr12 62217307 62217617 -81568838 + AluY SINE Alu 1 307 -4 1794 177 43 13 chr12 62217620 62217983 -81568472 - MLT2A2 LTR ERVL -149 304 8 1269 133 38 42 chr12 62217984 62218248 -81568207 - L1MB8 LINE L1 -45 6133 5871 2097 110 3 25 chr12 62218249 62218566 -81567889 - AluSx SINE Alu -2 310 1 733 195 133 36 chr12 62218571 62218873 -81567582 + L1MC5 LINE L1 7326 7656 -305 496 141 103 0 chr12 62218873 62218951 -81567504 + AluSq SINE Alu 2 87 -225 990 71 0 0 chr12 62218951 62219077 -81567378 + AluSp/q SINE Alu 181 306 -7 2220 72 7 30 chr12 62219083 62219387 -81567068 + AluY SINE Alu 1 297 -14 2192 91 3 3 chr12 62219388 62219684 -81566771 + AluSg SINE Alu 1 296 -14 4229 165 17 27 chr12 62221234 62222537 -81563918 - L1P5 LINE L1 -518 5633 4332 349 195 0 0 chr12 62222535 62222612 -81563843 + L1 LINE L1 4216 4292 -1854 * 518 300 70 55 chr12 62222617 62222865 -81563590 - L1MEd LINE L1 -5168 951 694 180 0 0 0 chr12 62222865 62222885 -81563570 + (TG)n Simple_repeat Simple_repeat 1 20 0 518 300 70 55 chr12 62222885 62223017 -81563438 - L1MEd LINE L1 -5425 694 565 285 317 44 28 chr12 62223322 62223502 -81562953 - L1MEd LINE L1 -5936 183 1 1025 282 71 40 chr12 62223507 62223985 -81562470 - HAL1 LINE L1 -426 2081 1589 697 151 0 17 chr12 62223970 62224089 -81562366 + L1 LINE L1 4106 4222 -1924 * 2154 90 10 3 chr12 62224089 62224388 -81562067 - AluSq SINE Alu -12 301 1 461 264 20 7 chr12 62224622 62224770 -81561685 - L1ME LINE L1 -436 5685 5536 461 124 0 11 chr12 62224942 62225031 -81561424 + (CCG)n Simple_repeat Simple_repeat 2 89 0 23 0 0 0 chr12 62225042 62225065 -81561390 + GC_rich Low_complexity Low_complexity 1 23 0 202 247 24 106 chr12 62225488 62225573 -81560882 - MIR3 SINE MIR -41 167 90 2307 80 3 6 chr12 62226254 62226567 -81559888 - AluSx SINE Alu 0 312 1 220 204 0 0 chr12 62226936 62226980 -81559475 + C-rich Low_complexity Low_complexity 3 46 0 576 95 0 32 chr12 62228198 62228293 -81558162 + AluSp/q SINE Alu 216 307 -6 2022 115 0 0 chr12 62228465 62228774 -81557681 - AluSg SINE Alu 0 309 1 2176 111 3 16 chr12 62228778 62229094 -81557361 - AluSx SINE Alu 0 312 1 791 287 92 18 chr12 62229129 62229509 -81556946 + L2 LINE L2 2237 2644 -670 989 127 12 24 chr12 62229509 62229674 -81556781 - AluSg/x SINE Alu -16 296 134 2186 125 0 0 chr12 62229674 62229979 -81556476 - AluSx SINE Alu -7 305 1 317 301 123 59 chr12 62230017 62230505 -81555950 - L1MC/D LINE L1 -461 5660 5273 595 167 20 0 chr12 62230508 62230610 -81555845 + AluJb SINE Alu 2 105 -207 4216 139 40 66 chr12 62230742 62232397 -81554058 + SVA Other Other 3 980 -406 2283 77 0 3 chr12 62232541 62232841 -81553614 - AluY SINE Alu -12 299 1 1477 192 0 4 chr12 62232879 62233150 -81553305 - AluJo SINE Alu -6 306 37 1869 129 0 40 chr12 62233178 62233503 -81552952 + AluJb SINE Alu 1 312 0 239 273 4 22 chr12 62234749 62234876 -81551579 + C-rich Low_complexity Low_complexity 1 216 0 463 10 106 0 chr12 62235086 62235190 -81551265 + (TA)n Simple_repeat Simple_repeat 1 115 0 2203 118 0 0 chr12 62235190 62235496 -81550959 - AluSx SINE Alu -6 306 1 1224 125 0 0 chr12 62235555 62235739 -81550716 - AluSg/x SINE Alu 0 312 129 2632 88 8 16 chr12 62235742 62236126 -81550329 - SVA Other Other 0 1386 1006 368 41 20 0 chr12 62236311 62236360 -81550095 - MER41-int LTR ERV1 -4851 1095 1046 2000 112 16 7 chr12 62236360 62236665 -81549790 + AluSg SINE Alu 1 308 -2 759 220 47 0 chr12 62237259 62237450 -81549005 - AluSg/x SINE Alu -12 300 101 6255 44 11 18 chr12 62237626 62238421 -81548034 + SVA Other Other 596 1385 -1 1108 139 12 0 chr12 62238422 62238595 -81547860 + AluSg/x SINE Alu 127 301 -11 665 245 139 0 chr12 62238604 62238820 -81547635 + L1MC4 LINE L1 7290 7535 -507 1604 190 0 38 chr12 62238820 62238992 -81547463 - AluJo SINE Alu -8 304 148 1616 178 7 20 chr12 62238992 62239296 -81547159 - AluJb SINE Alu -10 302 3 1604 190 0 38 chr12 62239296 62239439 -81547016 - AluJo SINE Alu -164 148 1 1747 166 0 13 chr12 62239444 62239745 -81546710 - AluJo SINE Alu -15 297 1 2114 95 3 0 chr12 62239810 62240128 -81546327 + AluSx SINE Alu 1 319 0 2075 140 0 0 chr12 62240129 62240425 -81546030 + AluSg SINE Alu 1 294 -16 289 284 84 19 chr12 62241037 62241192 -81545263 + L1MC4a LINE L1 5723 5887 -1921 189 0 0 0 chr12 62242000 62242021 -81544434 + (A)n Simple_repeat Simple_repeat 1 21 0 264 185 0 0 chr12 62243290 62243344 -81543111 + (TG)n Simple_repeat Simple_repeat 1 54 0 274 208 81 64 chr12 62244935 62245057 -81541398 - MIR SINE MIR -67 141 34 984 214 6 0 chr12 62245666 62245839 -81540616 - FAM SINE Alu -1 174 1 245 102 41 20 chr12 62248125 62248174 -81538281 - MER66B LTR ERV1 -143 343 294 2062 153 0 0 chr12 62248860 62249155 -81537300 - AluJb SINE Alu -17 295 1 1916 166 0 17 chr12 62250322 62250624 -81535831 - AluJb SINE Alu -15 297 1 416 288 90 49 chr12 62250635 62250902 -81535553 - L1ME4a LINE L1 -11 6110 5833 2289 96 7 13 chr12 62253051 62253353 -81533102 + AluSx SINE Alu 1 300 -12 2342 95 0 3 chr12 62253363 62253658 -81532797 + AluSg SINE Alu 1 294 -16 2025 48 48 8 chr12 62253835 62254086 -81532369 - AluY SINE Alu -13 298 38 2385 87 7 0 chr12 62254086 62254386 -81532069 - AluSp SINE Alu -11 302 1 1976 164 0 3 chr12 62254388 62254686 -81531769 - AluJb SINE Alu -15 297 1 2126 123 0 3 chr12 62254718 62255026 -81531429 - AluSx SINE Alu 0 307 1 1919 163 36 0 chr12 62256075 62256376 -81530079 + AluJb SINE Alu 1 312 0 566 156 0 11 chr12 62256750 62256840 -81529615 + AluJo SINE Alu 53 141 -171 1661 181 3 26 chr12 62256843 62257152 -81529303 + AluJo SINE Alu 11 312 0 403 215 132 89 chr12 62257152 62257246 -81529209 + L1ME4a LINE L1 5814 5903 -218 2075 100 50 0 chr12 62257246 62257525 -81528930 + AluSx SINE Alu 1 293 -19 403 215 132 89 chr12 62257525 62257688 -81528767 + L1ME4a LINE L1 5903 6118 -3 223 160 0 60 chr12 62258289 62258339 -81528116 + CT-rich Low_complexity Low_complexity 1 47 0 1254 179 26 18 chr12 62258826 62259099 -81527356 - AluJo SINE Alu -27 285 11 1059 269 85 5 chr12 62259104 62259505 -81526950 - L1ME4a LINE L1 -1998 5810 5378 1264 201 40 52 chr12 62259561 62259905 -81526550 - L1ME3 LINE L1 -1 6161 5821 2174 133 0 0 chr12 62259911 62260220 -81526235 - AluSx SINE Alu -3 309 1 792 147 85 0 chr12 62260329 62260458 -81525997 + FAM SINE Alu 18 157 -28 195 69 0 0 chr12 62260464 62260493 -81525962 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 62261579 62261600 -81524855 + GC_rich Low_complexity Low_complexity 1 21 0 2149 103 45 0 chr12 62264284 62264575 -81521880 - AluSc SINE Alu -5 304 1 1014 187 31 31 chr12 62264652 62264877 -81521578 + Charlie1 DNA MER1_type 1 225 -2536 320 161 32 0 chr12 62264883 62264945 -81521510 + Charlie1 DNA MER1_type 2631 2694 -67 1401 158 38 0 chr12 62264950 62265190 -81521265 - AluSg SINE Alu -17 293 45 258 146 0 0 chr12 62265192 62265233 -81521222 + AluS SINE Alu 36 76 -227 1321 147 0 5 chr12 62265370 62265561 -81520894 - AluSq SINE Alu -123 190 1 2201 114 7 3 chr12 62265572 62265871 -81520584 - AluSq SINE Alu -12 301 2 571 184 0 0 chr12 62265871 62265980 -81520475 - Charlie1 DNA MER1_type -744 2017 1909 687 228 109 74 chr12 62266006 62266383 -81520072 - MLT1H LTR MaLR -69 480 91 2267 119 0 0 chr12 62267046 62267356 -81519099 - AluSg SINE Alu 0 310 1 246 345 24 12 chr12 62267361 62267445 -81519010 + L2 LINE L2 3225 3309 -4 817 157 13 20 chr12 62268150 62268303 -81518152 + AluSp/q SINE Alu 160 311 -2 912 215 61 99 chr12 62268328 62268723 -81517732 + L1MC4 LINE L1 6793 7172 -870 446 186 10 10 chr12 62268739 62268836 -81517619 + U6 snRNA snRNA 1 97 -10 522 61 0 0 chr12 62269329 62269395 -81517060 - Alu SINE Alu -232 78 13 189 0 0 0 chr12 62269399 62269420 -81517035 + (T)n Simple_repeat Simple_repeat 1 21 0 977 98 0 0 chr12 62269428 62269550 -81516905 + AluSq/x SINE Alu 14 135 -178 1513 210 34 10 chr12 62269550 62269841 -81516614 + AluJb SINE Alu 1 298 -14 1773 161 7 18 chr12 62269843 62270123 -81516332 + AluJb SINE Alu 3 279 -33 200 100 25 0 chr12 62270132 62270172 -81516283 + (TC)n Simple_repeat Simple_repeat 2 42 0 1194 76 0 0 chr12 62270395 62270539 -81515916 - AluSg/x SINE Alu -8 302 159 4942 30 0 2 chr12 62270899 62271471 -81514984 + L1PA5 LINE L1 5576 6146 -8 687 228 109 74 chr12 62272074 62272451 -81514004 + MLT1H LTR MaLR 91 480 -69 528 188 0 0 chr12 62272477 62272578 -81513877 + Charlie1 DNA MER1_type 1909 2009 -752 2239 115 0 3 chr12 62273858 62274163 -81512292 + AluSx SINE Alu 1 304 -8 348 310 165 10 chr12 62274176 62274376 -81512079 - L2 LINE L2 -1111 2203 1973 1851 179 98 22 chr12 62274377 62274745 -81511710 - MSTD LTR MaLR 0 396 1 859 182 88 24 chr12 62275298 62275350 -81511105 - AluJo SINE Alu -131 181 134 207 0 0 0 chr12 62275350 62275373 -81511082 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 859 182 88 24 chr12 62275373 62275490 -81510965 - AluJo SINE Alu -178 134 1 306 343 0 0 chr12 62275677 62275785 -81510670 + MLT1H-int LTR MaLR 433 540 -831 2359 104 0 0 chr12 62275785 62276083 -81510372 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr12 62276184 62276204 -81510251 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 829 223 11 11 chr12 62276406 62276581 -81509874 + FAM SINE Alu 1 175 0 399 242 81 128 chr12 62277127 62277267 -81509188 + MLT1H-int LTR MaLR 1053 1198 -173 1144 196 5 23 chr12 62277267 62277481 -81508974 + MER63A DNA MER1_type 1 210 0 399 242 81 128 chr12 62277481 62277675 -81508780 + MLT1H-int LTR MaLR 1198 1371 0 226 297 0 0 chr12 62277694 62277758 -81508697 + MLT1H LTR MaLR 20 83 -459 244 316 13 0 chr12 62277858 62277934 -81508521 + MLT1H LTR MaLR 229 305 -244 960 166 11 11 chr12 62277938 62278113 -81508342 + MLT1A1 LTR MaLR 18 192 -173 537 207 227 0 chr12 62278153 62278303 -81508152 - MIR SINE MIR -46 216 33 2223 107 3 0 chr12 62278333 62278647 -81507808 + AluSx SINE Alu 5 312 0 1220 141 0 32 chr12 62278647 62278832 -81507623 + AluJb SINE Alu 134 312 0 352 276 20 0 chr12 62278962 62279060 -81507395 - L1MEd LINE L1 -5458 661 562 1865 245 97 10 chr12 62279210 62279724 -81506731 + MER77 LTR ERV1 41 599 -6 23 33 0 0 chr12 62280649 62280679 -81505776 + AT_rich Low_complexity Low_complexity 1 30 0 1737 96 118 65 chr12 62280921 62281207 -81505248 + THE1C LTR MaLR 1 311 -64 2376 76 3 32 chr12 62281207 62281521 -81504934 + AluSp SINE Alu 3 307 -6 1737 96 118 65 chr12 62281521 62281590 -81504865 + THE1C LTR MaLR 311 375 0 270 0 0 0 chr12 62281940 62281970 -81504485 + (T)n Simple_repeat Simple_repeat 1 30 0 2301 114 3 0 chr12 62282716 62283023 -81503432 - AluSp SINE Alu -5 308 1 229 130 43 0 chr12 62283382 62283428 -81503027 - L1MB4 LINE L1 0 6180 6133 2642 133 50 41 chr12 62283428 62283964 -81502491 - L1MB3 LINE L1 -24 6159 5619 1834 161 27 3 chr12 62283997 62284289 -81502166 + AluJb SINE Alu 1 299 -13 302 280 61 37 chr12 62284452 62284547 -81501908 - MIR3 SINE MIR 0 262 171 2130 126 0 35 chr12 62284547 62284864 -81501591 - AluSx SINE Alu -6 306 1 302 280 61 37 chr12 62284864 62284964 -81501491 - MIR3 SINE MIR -91 171 60 520 167 87 24 chr12 62284979 62285105 -81501350 - LTR45 LTR ERV1 0 525 392 232 216 0 0 chr12 62285488 62285539 -81500916 - MER115 DNA AcHobo -26 667 617 252 0 0 0 chr12 62285563 62285591 -81500864 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 323 219 0 0 chr12 62285612 62285685 -81500770 - LTR30 LTR ERV1 -98 624 552 2111 128 13 3 chr12 62285697 62286002 -81500453 - AluSq SINE Alu -5 308 1 578 198 0 0 chr12 62286068 62286164 -81500291 - FRAM SINE Alu -84 92 1 381 341 54 10 chr12 62286352 62286557 -81499898 - MER115 DNA AcHobo -446 247 34 2374 91 0 3 chr12 62286698 62286994 -81499461 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr12 62287467 62287493 -81498962 + AT_rich Low_complexity Low_complexity 1 26 0 2421 56 0 11 chr12 62287644 62287958 -81498497 - AluY SINE Alu 0 311 1 2275 116 7 3 chr12 62287958 62288268 -81498187 - AluSq SINE Alu -2 311 1 760 173 15 15 chr12 62288351 62288484 -81497971 - AluJb SINE Alu -22 290 158 2259 112 0 0 chr12 62288532 62288827 -81497628 - AluSx SINE Alu -13 299 5 2147 104 3 14 chr12 62288839 62289149 -81497306 - AluSp SINE Alu 0 307 1 1763 108 19 4 chr12 62289167 62289427 -81497028 - AluY SINE Alu -19 292 29 200 100 25 0 chr12 62289818 62289858 -81496597 + (GA)n Simple_repeat Simple_repeat 2 42 0 1773 161 7 18 chr12 62289867 62290147 -81496308 - AluJb SINE Alu -33 279 3 1513 210 34 10 chr12 62290149 62290440 -81496015 - AluJb SINE Alu -14 298 1 646 144 10 10 chr12 62290440 62290544 -81495911 - AluSq/x SINE Alu -178 135 32 992 164 44 0 chr12 62290561 62290720 -81495735 + AluJb SINE Alu 133 298 -14 2528 68 3 3 chr12 62290812 62291119 -81495336 + AluSp SINE Alu 1 307 -6 1809 127 8 15 chr12 62291181 62291441 -81495014 - AluSx SINE Alu -54 258 1 802 216 7 0 chr12 62291695 62291843 -81494612 - FRAM SINE Alu -23 153 5 269 159 175 0 chr12 62291848 62291911 -81494544 - MER46B DNA MER2_type -181 55 107 246 118 0 39 chr12 62291909 62291960 -81494495 + Alu SINE Alu 252 300 -1 * 2458 77 3 0 chr12 62291970 62292267 -81494188 + AluSp SINE Alu 1 298 -15 1998 121 14 0 chr12 62292497 62292786 -81493669 + AluSx SINE Alu 1 293 -19 2225 119 0 0 chr12 62292925 62293218 -81493237 + AluSx SINE Alu 1 293 -19 285 321 24 12 chr12 62293901 62293985 -81492470 - L2 LINE L2 -4 3309 3225 1725 174 0 0 chr12 62293990 62294272 -81492183 + AluSg SINE Alu 1 282 -28 506 231 31 75 chr12 62294283 62294443 -81492012 - L2 LINE L2 -282 3031 2879 1957 74 3 84 chr12 62294498 62294794 -81491661 + AluY SINE Alu 1 272 -39 2195 120 3 0 chr12 62294894 62295195 -81491260 - AluSx SINE Alu -10 302 1 807 163 0 8 chr12 62295254 62295383 -81491072 + FLAM_C SINE Alu 2 129 -4 1562 150 66 0 chr12 62295600 62295873 -81490582 + AluJb SINE Alu 3 293 -19 23 105 0 0 chr12 62296771 62296857 -81489598 + GC_rich Low_complexity Low_complexity 1 86 0 31 76 0 0 chr12 62296905 62296971 -81489484 + GC_rich Low_complexity Low_complexity 1 66 0 300 344 0 23 chr12 62297020 62297148 -81489307 + G-rich Low_complexity Low_complexity 4 128 0 207 0 0 0 chr12 62298130 62298153 -81488302 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2016 140 0 10 chr12 62298155 62298448 -81488007 - AluSx SINE Alu -22 290 1 536 101 101 0 chr12 62298585 62298664 -81487791 + AluJ/FLAM SINE Alu 2 88 -224 309 261 84 35 chr12 62298683 62298825 -81487630 - MIR SINE MIR 0 262 114 2169 94 0 85 chr12 62298847 62299175 -81487280 - AluSx SINE Alu -12 300 1 1935 106 26 44 chr12 62299175 62299431 -81487024 - LTR56 LTR ERV1 -110 335 84 1481 180 0 75 chr12 62299431 62299766 -81486689 - AluJo SINE Alu 0 312 1 1935 106 26 44 chr12 62299766 62299849 -81486606 - LTR56 LTR ERV1 -361 84 1 2377 97 0 0 chr12 62299948 62300246 -81486209 + AluSg SINE Alu 1 298 -12 1419 161 38 52 chr12 62301891 62301995 -81484460 + AluJo SINE Alu 1 105 -197 2360 98 0 0 chr12 62301995 62302291 -81484164 - AluSg SINE Alu -13 297 2 1419 161 38 52 chr12 62302291 62302315 -81484140 + AluJo SINE Alu 105 128 -174 2317 105 7 0 chr12 62302315 62302610 -81483845 - AluSg SINE Alu -13 297 1 1986 166 3 19 chr12 62302612 62302796 -81483659 - AluJb SINE Alu -1 311 133 2376 78 0 3 chr12 62302796 62303114 -81483341 - AluY SINE Alu 0 311 2 1986 166 3 19 chr12 62303114 62303243 -81483212 - AluJb SINE Alu -179 133 3 1419 161 38 52 chr12 62303243 62303401 -81483054 + AluJo SINE Alu 129 287 -15 2034 78 18 14 chr12 62303536 62303818 -81482637 + AluY SINE Alu 1 283 -28 1636 95 114 49 chr12 62304014 62304277 -81482178 - AluSp SINE Alu -33 280 1 1046 151 44 0 chr12 62304292 62304451 -81482004 + AluJb SINE Alu 133 298 -14 2079 139 0 3 chr12 62304543 62304852 -81481603 + AluSq SINE Alu 1 308 -5 2215 93 22 19 chr12 62304867 62305178 -81481277 + AluSx SINE Alu 1 312 0 2290 57 47 24 chr12 62305526 62305824 -81480631 + AluY SINE Alu 1 305 -6 327 243 122 9 chr12 62305877 62305984 -81480471 + MIR SINE MIR 104 222 -40 221 385 145 0 chr12 62306089 62306289 -81480166 - L2 LINE L2 -460 2854 2626 1774 167 7 20 chr12 62306315 62306449 -81480006 + AluJo SINE Alu 1 135 -177 2021 144 0 7 chr12 62306449 62306747 -81479708 + AluSx SINE Alu 1 296 -16 1774 167 7 20 chr12 62306747 62306918 -81479537 + AluJo SINE Alu 135 302 -10 1783 195 54 77 chr12 62306960 62306975 -81479480 - L1MC5 LINE L1 -298 7663 7649 2330 108 0 3 chr12 62306975 62307280 -81479175 + AluSg SINE Alu 1 304 -6 1783 195 54 77 chr12 62307280 62307406 -81479049 - L1MC5 LINE L1 -312 7649 7522 2111 118 20 3 chr12 62307406 62307703 -81478752 - AluSx SINE Alu -6 306 5 1783 195 54 77 chr12 62307703 62308277 -81478178 - L1MC5 LINE L1 -439 7522 6963 2361 85 0 3 chr12 62308609 62308903 -81477552 + AluSx SINE Alu 1 293 -19 28 29 0 0 chr12 62308903 62308938 -81477517 + AT_rich Low_complexity Low_complexity 1 35 0 2204 107 0 7 chr12 62308948 62309246 -81477209 + AluSg1 SINE Alu 1 296 -13 2011 141 0 20 chr12 62309262 62309561 -81476894 + AluSq SINE Alu 7 299 -14 2109 105 3 75 chr12 62310353 62310686 -81475769 + AluSg SINE Alu 1 309 -1 195 267 23 105 chr12 62310694 62310780 -81475675 + L2 LINE L2 3186 3264 -8 1939 70 47 8 chr12 62310936 62311192 -81475263 - AluY SINE Alu -8 303 38 2400 87 7 0 chr12 62311192 62311492 -81474963 - AluSp SINE Alu -11 302 1 1976 164 0 3 chr12 62311494 62311792 -81474663 - AluJb SINE Alu -15 297 1 2126 123 0 3 chr12 62311824 62312132 -81474323 - AluSx SINE Alu 0 307 1 1919 163 36 0 chr12 62313181 62313482 -81472973 + AluJb SINE Alu 1 312 0 566 156 0 11 chr12 62313856 62313946 -81472509 + AluJo SINE Alu 53 141 -171 1696 185 0 19 chr12 62313949 62314257 -81472198 + AluJo SINE Alu 11 312 0 403 215 132 89 chr12 62314257 62314351 -81472104 + L1ME4a LINE L1 5814 5903 -218 2075 100 50 0 chr12 62314351 62314630 -81471825 + AluSx SINE Alu 1 293 -19 403 215 132 89 chr12 62314630 62314793 -81471662 + L1ME4a LINE L1 5903 6118 -3 223 160 0 60 chr12 62315394 62315444 -81471011 + CT-rich Low_complexity Low_complexity 1 47 0 2376 88 3 0 chr12 62316297 62316592 -81469863 - AluSp SINE Alu -17 296 1 919 160 112 0 chr12 62316593 62316781 -81469674 + L1MB7 LINE L1 5910 6118 -66 1387 109 19 5 chr12 62316890 62317100 -81469355 + AluSg/x SINE Alu 91 303 -9 643 118 65 0 chr12 62317114 62317207 -81469248 - FLAM_C SINE Alu -26 117 19 2260 131 0 3 chr12 62317278 62317584 -81468871 - AluSx SINE Alu -7 305 1 2473 91 3 0 chr12 62319417 62319726 -81466729 + AluSg SINE Alu 1 310 0 2415 78 0 0 chr12 62320206 62320501 -81465954 + AluSq SINE Alu 1 295 -18 351 252 45 90 chr12 62320906 62321061 -81465394 + L1ME4a LINE L1 5974 6121 0 22 56 0 0 chr12 62321109 62321145 -81465310 + AT_rich Low_complexity Low_complexity 1 36 0 2067 152 0 0 chr12 62321382 62321679 -81464776 + AluSx SINE Alu 1 297 -15 1435 183 44 11 chr12 62321733 62322006 -81464449 - AluJb SINE Alu -30 282 1 313 285 131 68 chr12 62322008 62322496 -81463959 + L1ME3 LINE L1 5273 5660 -461 2279 133 0 0 chr12 62322534 62322843 -81463612 + AluSx SINE Alu 1 309 -3 1264 201 40 52 chr12 62322849 62323193 -81463262 + L1ME3 LINE L1 5821 6161 -1 1171 272 85 5 chr12 62323250 62323656 -81462799 + L1MC4a LINE L1 5378 5825 -1983 1729 158 3 16 chr12 62323656 62323959 -81462496 + AluJo SINE Alu 11 309 -3 1171 272 85 5 chr12 62323959 62324001 -81462454 + L1MC4a LINE L1 5825 5862 -1946 4898 55 0 11 chr12 62324157 62324774 -81461681 - SVA Other Other -776 610 1 1088 112 0 0 chr12 62324802 62324936 -81461519 - AluSq/x SINE Alu -178 134 1 1395 218 131 32 chr12 62324936 62325469 -81460986 - L1MC4 LINE L1 -750 7292 6707 2181 122 6 10 chr12 62325471 62325782 -81460673 - AluSg SINE Alu 0 310 1 1064 84 15 0 chr12 62325784 62325915 -81460540 - AluSq/x SINE Alu -177 135 3 256 187 120 0 chr12 62325930 62326005 -81460450 + L1MC4a LINE L1 5884 5967 -1841 1003 155 83 12 chr12 62326169 62326337 -81460118 + AluSg/x SINE Alu 119 298 -12 416 232 96 32 chr12 62326343 62326623 -81459832 + L1ME4a LINE L1 5815 6112 -9 21 0 0 0 chr12 62326624 62326645 -81459810 + AT_rich Low_complexity Low_complexity 1 21 0 1631 63 8 8 chr12 62326775 62327013 -81459442 + HERVL-A2 LTR ERVL 5415 5652 -2 1611 96 0 0 chr12 62327015 62327235 -81459220 + MLT2A2 LTR ERVL 1 220 -233 2578 48 0 0 chr12 62327603 62327896 -81458559 + AluY SINE Alu 1 293 -18 1323 107 0 21 chr12 62328082 62328102 -81458353 - AluSg/x SINE Alu -9 303 284 2387 107 0 0 chr12 62328102 62328412 -81458043 - AluSg SINE Alu 0 310 1 188 86 29 0 chr12 62328413 62328448 -81458007 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1323 107 0 21 chr12 62328448 62328612 -81457843 - AluSg/x SINE Alu -27 285 121 293 167 0 0 chr12 62328672 62328720 -81457735 - MER66A LTR ERV1 -140 338 291 182 261 231 0 chr12 62328978 62329043 -81457412 + L2 LINE L2 3204 3283 -30 2392 146 27 5 chr12 62329043 62329455 -81457000 + MSTB LTR MaLR 1 421 -5 989 249 13 9 chr12 62329631 62329860 -81456595 - MIR SINE MIR -1 261 32 260 26 0 26 chr12 62332006 62332044 -81454411 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr12 62332134 62332162 -81454293 + (GA)n Simple_repeat Simple_repeat 2 29 0 207 258 145 0 chr12 62332321 62332383 -81454072 - L2 LINE L2 -1 3271 3201 476 241 78 0 chr12 62332672 62332788 -81453667 + MIR SINE MIR 83 207 -55 1946 90 18 0 chr12 62335838 62336117 -81450338 + L1MA1 LINE L1 6019 6302 0 253 182 175 84 chr12 62336226 62336369 -81450086 + MER53 DNA DNA 1 156 -33 347 242 0 0 chr12 62339259 62339325 -81447130 - MER2 DNA MER2_type 0 345 280 1969 111 77 27 chr12 62339343 62339640 -81446815 + AluSx SINE Alu 1 312 0 1172 172 10 0 chr12 62339647 62339856 -81446599 - MER2 DNA MER2_type -134 211 1 2553 66 3 3 chr12 62340663 62340968 -81445487 - AluY SINE Alu -6 305 1 2267 109 0 3 chr12 62341201 62341495 -81444960 - AluSx SINE Alu -14 298 6 2309 114 0 3 chr12 62341745 62342043 -81444412 - AluSq SINE Alu -16 297 1 2212 72 9 82 chr12 62343970 62344289 -81442166 - AluSx SINE Alu -14 298 3 199 239 22 0 chr12 62345947 62345993 -81440462 + MIR SINE MIR 216 262 0 348 204 262 0 chr12 62346559 62346662 -81439793 + MER5B DNA MER1_type 1 130 -48 1619 126 37 41 chr12 62346662 62346931 -81439524 - AluJb SINE Alu 0 312 45 281 122 0 0 chr12 62346933 62346974 -81439481 + AluS SINE Alu 36 76 -227 24 0 0 0 chr12 62347029 62347053 -81439402 + AT_rich Low_complexity Low_complexity 1 24 0 219 184 0 0 chr12 62347053 62347091 -81439364 - MER5B DNA MER1_type -140 38 1 2304 96 3 10 chr12 62349068 62349371 -81437084 + AluSx SINE Alu 1 301 -11 2603 59 0 0 chr12 62350243 62350547 -81435908 - AluY SINE Alu -7 304 1 197 293 189 0 chr12 62352174 62352280 -81434175 + MIR SINE MIR 89 214 -48 2174 114 20 3 chr12 62352498 62352797 -81433658 - AluSx SINE Alu -8 304 1 400 265 0 49 chr12 62360813 62360998 -81425457 + G-rich Low_complexity Low_complexity 3 178 0 263 136 17 0 chr12 62361260 62361319 -81425136 + (CCG)n Simple_repeat Simple_repeat 2 61 0 186 250 24 107 chr12 62361770 62361854 -81424601 - MIR3 SINE MIR -42 166 90 2451 80 3 6 chr12 62362535 62362848 -81423607 - AluSx SINE Alu 0 312 1 210 178 0 22 chr12 62363217 62363262 -81423193 + C-rich Low_complexity Low_complexity 3 46 0 1349 232 141 81 chr12 62364553 62365069 -81421386 - L2 LINE L2 0 3313 2829 2223 97 10 3 chr12 62365069 62365359 -81421096 + AluSq SINE Alu 1 292 -21 1349 232 141 81 chr12 62365359 62365631 -81420824 - L2 LINE L2 -484 2829 2223 2253 113 23 0 chr12 62365911 62366213 -81420242 + AluSc SINE Alu 1 309 0 786 265 0 0 chr12 62366354 62366524 -81419931 - MER58A DNA MER1_type -23 201 32 2467 66 0 10 chr12 62369574 62369877 -81416578 + AluSq SINE Alu 1 300 -13 1832 92 13 0 chr12 62369945 62370183 -81416272 - AluSg/x SINE Alu 0 312 72 1313 94 24 0 chr12 62370401 62370571 -81415884 - AluSq SINE Alu -11 302 129 3768 48 5 9 chr12 62370574 62371011 -81415444 - SVA Other Other 0 1386 952 180 0 0 0 chr12 62371251 62371271 -81415184 + (TG)n Simple_repeat Simple_repeat 1 20 0 437 284 133 59 chr12 62371327 62371425 -81415030 + L1M4 LINE L1 4951 5040 -1106 1676 159 41 38 chr12 62371425 62371715 -81414740 + AluJb SINE Alu 3 293 -19 437 284 133 59 chr12 62371715 62371887 -81414568 + L1M4 LINE L1 5040 5241 -905 1490 230 77 53 chr12 62371932 62371995 -81414460 + L1MC4 LINE L1 7014 7074 -968 207 0 0 0 chr12 62371995 62372018 -81414437 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1490 230 77 53 chr12 62372018 62372100 -81414355 + L1MC4 LINE L1 7074 7153 -889 1227 57 0 0 chr12 62372100 62372259 -81414196 - L1PA3 LINE L1 0 6155 5997 1490 230 77 53 chr12 62372259 62372621 -81413834 + L1MC4 LINE L1 7153 7534 -508 2240 110 3 23 chr12 62372639 62372948 -81413507 + AluSx SINE Alu 1 303 -9 1249 126 0 55 chr12 62372951 62373150 -81413305 + AluSg/x SINE Alu 124 311 -1 592 167 50 8 chr12 62373152 62373272 -81413183 + L1MC4 LINE L1 7542 7666 -376 739 195 0 0 chr12 62373315 62373438 -81413017 + AluJo SINE Alu 2 124 -188 726 163 24 0 chr12 62373446 62373569 -81412886 - AluJo SINE Alu -176 136 11 1101 147 0 63 chr12 62373577 62373768 -81412687 + AluJo SINE Alu 116 294 -18 497 211 72 13 chr12 62373817 62373969 -81412486 + L1MC4 LINE L1 7744 7904 -138 34 72 0 0 chr12 62374013 62374082 -81412373 + AT_rich Low_complexity Low_complexity 1 69 0 393 234 62 0 chr12 62374086 62374214 -81412241 + L1MC4 LINE L1 7907 8042 0 2340 99 3 0 chr12 62374264 62374566 -81411889 + AluSq SINE Alu 1 303 -10 685 187 84 6 chr12 62374815 62374981 -81411474 - AluJb SINE Alu -17 295 117 886 222 20 5 chr12 62375135 62375333 -81411122 - MER2 DNA MER2_type -141 204 4 550 270 48 8 chr12 62375614 62375790 -81410665 + MER20B DNA MER1_type 14 198 -21 2215 112 0 3 chr12 62375915 62376202 -81410253 - AluSx SINE Alu -24 288 3 2315 61 41 7 chr12 62376602 62376896 -81409559 + AluY SINE Alu 1 304 -7 388 305 58 32 chr12 62377383 62377537 -81408918 - L1MC4a LINE L1 -1874 5934 5777 597 130 0 20 chr12 62378113 62378213 -81408242 + MER4A LTR ERV1 1 98 -566 1816 134 9 25 chr12 62378213 62378564 -81407891 + MER4A LTR ERV1 261 664 0 2772 125 126 75 chr12 62378567 62379502 -81406953 + MER4A-int LTR ERV1 1 887 -5711 1799 208 24 109 chr12 62379502 62379843 -81406612 + LTR9 LTR ERV1 1 369 -243 1639 166 52 7 chr12 62379843 62380133 -81406322 + AluJb SINE Alu 1 303 -9 1799 208 24 109 chr12 62380133 62380347 -81406108 + LTR9 LTR ERV1 369 600 -12 2206 109 7 0 chr12 62380347 62380641 -81405814 - AluSx SINE Alu -11 301 6 2562 83 3 0 chr12 62380647 62380959 -81405496 - AluSq SINE Alu 0 313 1 1799 208 24 109 chr12 62380959 62381064 -81405391 + LTR9 LTR ERV1 605 612 0 2772 125 126 75 chr12 62381064 62381083 -81405372 + MER4A-int LTR ERV1 887 1052 -5546 2206 113 0 7 chr12 62381085 62381376 -81405079 - AluSc SINE Alu -20 289 1 2168 127 7 10 chr12 62381871 62382178 -81404277 + AluSx SINE Alu 1 306 -6 2466 85 7 0 chr12 62382336 62382642 -81403813 + AluSq SINE Alu 1 308 -5 699 197 0 15 chr12 62382656 62382793 -81403662 + FRAM SINE Alu 35 169 -7 1540 214 13 0 chr12 62383498 62383802 -81402653 + AluSc SINE Alu 1 308 -1 465 143 0 0 chr12 62383806 62383876 -81402579 + AluS SINE Alu 2 71 -242 254 0 151 0 chr12 62383999 62384085 -81402370 + (TA)n Simple_repeat Simple_repeat 1 99 0 * 520 108 60 12 chr12 62384070 62384237 -81402218 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 272 368 130 12 chr12 62384343 62384590 -81401865 - L2 LINE L2 -79 3193 2918 386 297 38 124 chr12 62384597 62384821 -81401634 + L2 LINE L2 2808 3050 -222 414 0 0 0 chr12 62384821 62384867 -81401588 + (TG)n Simple_repeat Simple_repeat 1 46 0 2107 107 4 4 chr12 62384867 62385148 -81401307 - AluSx SINE Alu -31 281 1 386 297 38 124 chr12 62385148 62385243 -81401212 + L2 LINE L2 3049 3151 -121 2374 84 10 0 chr12 62385243 62385539 -81400916 - AluSx SINE Alu -13 299 1 386 297 38 124 chr12 62385539 62385718 -81400737 + L2 LINE L2 3151 3265 -7 510 327 125 20 chr12 62385855 62386360 -81400095 - L2 LINE L2 -560 2754 2197 2218 90 29 26 chr12 62386365 62386677 -81399778 + AluSq SINE Alu 1 313 0 207 0 0 0 chr12 62386733 62386756 -81399699 + (A)n Simple_repeat Simple_repeat 1 23 0 875 217 71 4 chr12 62387701 62387941 -81398514 - MIR SINE MIR -2 260 5 180 111 0 0 chr12 62388542 62388569 -81397886 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 2210 114 3 0 chr12 62389661 62389968 -81396487 - AluSx SINE Alu -4 308 1 2242 95 7 3 chr12 62390259 62390553 -81395902 + AluSx SINE Alu 1 295 -17 222 220 68 0 chr12 62390660 62390719 -81395736 - MIR SINE MIR 0 262 200 1495 231 46 43 chr12 62390740 62391112 -81395343 + MLT1H1 LTR MaLR 129 501 -54 426 191 112 0 chr12 62391149 62391238 -81395217 + AluJ/FLAM SINE Alu 2 100 -212 2201 98 0 41 chr12 62391249 62391567 -81394888 - AluSq SINE Alu -8 305 1 660 278 105 96 chr12 62391567 62391731 -81394724 - L2 LINE L2 -10 3303 3142 2260 120 0 0 chr12 62391731 62392031 -81394424 + AluSg SINE Alu 1 300 -10 660 278 105 96 chr12 62392031 62392119 -81394336 - L2 LINE L2 -171 3142 3056 188 45 0 0 chr12 62392119 62392141 -81394314 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 1430 150 55 55 chr12 62392144 62392451 -81394004 - AluJo SINE Alu -5 307 1 660 278 105 96 chr12 62392451 62392970 -81393485 - L2 LINE L2 -258 3055 2482 747 173 0 0 chr12 62393077 62393187 -81393268 + FLAM_C SINE Alu 2 111 -32 717 238 6 28 chr12 62393206 62393387 -81393068 - AluSg/x SINE Alu -8 304 128 2114 101 0 3 chr12 62393390 62393705 -81392750 - AluSx SINE Alu 0 314 1 26 0 0 0 chr12 62393705 62393731 -81392724 + AT_rich Low_complexity Low_complexity 1 26 0 1340 234 115 25 chr12 62393732 62393926 -81392529 - L2 LINE L2 -976 2338 2163 1417 188 14 35 chr12 62393926 62394269 -81392186 - AluJb SINE Alu 0 337 1 1340 234 115 25 chr12 62394269 62394560 -81391895 - L2 LINE L2 -1151 2163 1808 2209 112 0 0 chr12 62394650 62394954 -81391501 - AluSx SINE Alu -8 304 1 2050 90 79 0 chr12 62395072 62395362 -81391093 + AluSp SINE Alu 1 313 0 279 0 0 0 chr12 62395362 62395393 -81391062 + (TA)n Simple_repeat Simple_repeat 2 32 0 246 208 0 0 chr12 62395424 62395477 -81390978 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 408 196 176 10 chr12 62395481 62395583 -81390872 - FLAM_A SINE Alu -14 119 1 499 296 102 64 chr12 62395708 62395761 -81390694 - L2 LINE L2 -1057 2257 2207 2238 106 0 0 chr12 62395761 62396063 -81390392 + AluSg SINE Alu 1 302 -8 499 296 102 64 chr12 62396063 62396277 -81390178 - L2 LINE L2 -1107 2207 1974 1890 179 98 22 chr12 62396277 62396645 -81389810 - MSTD LTR MaLR 0 396 1 499 296 102 64 chr12 62396645 62396690 -81389765 - L2 LINE L2 -1340 1974 1932 462 298 80 40 chr12 62398049 62398485 -81387970 + LTR33 LTR ERVL 15 520 -1 906 188 19 24 chr12 62399344 62399551 -81386904 + MER96B DNA MER1_type? 1 206 -211 1661 165 30 13 chr12 62400835 62400979 -81385476 + AluJo SINE Alu 1 141 -171 248 0 31 0 chr12 62400979 62401011 -81385444 + (GTGTG)n Simple_repeat Simple_repeat 3 35 0 1661 165 30 13 chr12 62401011 62401169 -81385286 + AluJo SINE Alu 141 308 -4 2223 74 0 0 chr12 62401171 62401482 -81384973 + AluY SINE Alu 1 311 0 1942 157 0 0 chr12 62401606 62401900 -81384555 + AluJo SINE Alu 6 299 -13 2029 103 45 0 chr12 62404911 62405202 -81381253 - AluSc SINE Alu -5 304 1 1021 187 31 31 chr12 62405279 62405504 -81380951 + Charlie1 DNA MER1_type 1 225 -2536 455 197 82 8 chr12 62405510 62405577 -81380878 + Charlie1 DNA MER1_type 2631 2692 -69 2309 72 0 0 chr12 62405577 62405867 -81380588 - AluSx SINE Alu -17 295 6 455 197 82 8 chr12 62405867 62405921 -81380534 + Charlie1 DNA MER1_type 2692 2761 0 791 147 85 0 chr12 62405981 62406110 -81380345 + FAM SINE Alu 18 157 -28 195 69 0 0 chr12 62406116 62406145 -81380310 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 62407231 62407252 -81379203 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 62409870 62409893 -81376562 + GC_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr12 62409906 62409932 -81376523 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 2073 89 14 3 chr12 62410683 62410974 -81375481 - AluSx SINE Alu -18 294 1 1894 118 3 26 chr12 62411696 62412002 -81374453 + AluSx SINE Alu 1 299 -13 944 136 45 132 chr12 62413910 62414081 -81372374 + ORSL DNA AcHobo 24 166 -109 2093 103 0 7 chr12 62414081 62414373 -81372082 + AluSg SINE Alu 1 290 -20 944 136 45 132 chr12 62414373 62414466 -81371989 + ORSL DNA AcHobo 166 265 -10 1396 176 153 0 chr12 62415860 62416212 -81370243 - AluJo SINE Alu 0 392 1 2236 72 10 3 chr12 62416217 62416510 -81369945 - AluY SINE Alu -15 296 2 615 217 127 6 chr12 62416538 62416704 -81369751 - MIR SINE MIR -44 218 33 321 221 78 0 chr12 62417244 62417321 -81369134 - MER91B DNA MER1_type -17 173 91 1143 143 0 11 chr12 62417325 62417521 -81368934 + AluSq SINE Alu 121 313 0 453 195 0 0 chr12 62417524 62417601 -81368854 - MER91B DNA MER1_type -113 77 1 2246 81 0 0 chr12 62420613 62420898 -81365557 + AluSx SINE Alu 24 308 -4 511 307 0 0 chr12 62421237 62421400 -81365055 - MER117 DNA MER1_type -33 164 2 274 331 180 20 chr12 62425653 62425958 -81360497 + L2 LINE L2 2881 3234 -79 2203 102 0 0 chr12 62427641 62427936 -81358519 - AluSq SINE Alu -18 295 1 249 296 217 9 chr12 62427938 62428053 -81358402 - L2 LINE L2 0 3272 3134 556 349 184 21 chr12 62428564 62428693 -81357762 + L2 LINE L2 1613 1720 -1594 2033 131 3 10 chr12 62428693 62429005 -81357450 - AluSg SINE Alu 0 310 1 556 349 184 21 chr12 62429005 62429574 -81356881 + L2 LINE L2 1720 2425 -889 673 174 78 0 chr12 62429582 62429697 -81356758 + AluJo/FLAM SINE Alu 2 125 -187 2310 75 0 0 chr12 62429699 62429994 -81356461 - AluY SINE Alu -16 295 1 2357 92 0 0 chr12 62430000 62430306 -81356149 - AluSp SINE Alu -7 306 1 1657 172 17 10 chr12 62432514 62432810 -81353645 - AluJo SINE Alu -14 298 1 242 299 0 0 chr12 62434484 62434551 -81351904 + L1ME LINE L1 5523 5589 -532 1698 158 24 21 chr12 62434553 62434844 -81351611 - AluJo SINE Alu -20 292 1 760 177 0 0 chr12 62434866 62434990 -81351465 + FLAM_A SINE Alu 1 124 -9 409 188 0 0 chr12 62435010 62435079 -81351376 - U6 snRNA snRNA 0 107 39 1723 132 14 25 chr12 62435079 62435360 -81351095 - AluJb SINE Alu -34 278 1 1173 173 105 102 chr12 62435362 62435657 -81350798 - AluJo SINE Alu -6 296 1 1981 106 0 7 chr12 62435666 62435949 -81350506 - AluSc SINE Alu -23 286 6 980 186 0 0 chr12 62435965 62436126 -81350329 + FRAM SINE Alu 1 156 -20 2347 261 112 32 chr12 62436142 62436436 -81350019 + L1MC4a LINE L1 6316 6585 -1223 2113 115 6 10 chr12 62436436 62436749 -81349706 + AluSx SINE Alu 1 312 0 2347 261 112 32 chr12 62436749 62437284 -81349171 + L1MC4a LINE L1 6585 7249 -559 1890 121 3 91 chr12 62437284 62437432 -81349023 + AluSx SINE Alu 1 112 -200 6261 63 34 48 chr12 62437432 62439290 -81347165 + SVA Other Other 1 1386 0 1890 121 3 91 chr12 62439290 62439465 -81346990 + AluSx SINE Alu 112 301 -11 2347 261 112 32 chr12 62439465 62439690 -81346765 + L1MC4a LINE L1 7249 7455 -353 1604 190 0 38 chr12 62439690 62439862 -81346593 - AluJo SINE Alu -8 304 148 1616 178 7 20 chr12 62439862 62440166 -81346289 - AluJb SINE Alu -10 302 3 1604 190 0 38 chr12 62440166 62440309 -81346146 - AluJo SINE Alu -164 148 1 1703 171 0 13 chr12 62440314 62440613 -81345842 - AluJo SINE Alu -15 297 3 2069 120 7 0 chr12 62440680 62440979 -81345476 + AluSq SINE Alu 1 301 -12 1244 220 44 10 chr12 62440992 62441136 -81345319 + AluJo SINE Alu 2 140 -172 2331 94 0 0 chr12 62441136 62441444 -81345011 + AluSq SINE Alu 1 308 -5 1244 220 44 10 chr12 62441444 62441595 -81344860 + AluJo SINE Alu 140 307 -5 190 305 23 84 chr12 62442148 62442279 -81344176 - L2 LINE L2 -12 3260 3138 2138 102 16 0 chr12 62442300 62442603 -81343852 + AluSc SINE Alu 1 308 -1 2066 121 7 0 chr12 62442606 62442911 -81343544 + AluSq SINE Alu 1 307 -6 2003 115 0 0 chr12 62443083 62443392 -81343063 - AluSg SINE Alu 0 309 1 2191 100 3 25 chr12 62443394 62443713 -81342742 - AluSx SINE Alu 0 312 1 1191 279 161 17 chr12 62443748 62444128 -81342327 + L2 LINE L2 2237 2561 -752 1719 129 13 33 chr12 62444128 62444293 -81342162 - AluSx SINE Alu -16 296 138 2122 117 0 7 chr12 62444293 62444600 -81341855 - AluSx SINE Alu -7 305 1 1719 129 13 33 chr12 62444600 62444736 -81341719 - AluSx SINE Alu -174 138 1 1191 279 161 17 chr12 62444736 62445283 -81341172 + L2 LINE L2 2561 3313 0 295 250 0 17 chr12 62445412 62445472 -81340983 + L2 LINE L2 3214 3272 0 2156 95 3 3 chr12 62446223 62446519 -81339936 - AluSg SINE Alu -14 296 1 2208 72 7 30 chr12 62446520 62446824 -81339631 - AluY SINE Alu -14 297 1 2355 88 0 0 chr12 62446830 62447136 -81339319 - AluSp SINE Alu -7 306 1 187 171 0 24 chr12 62448932 62448973 -81337482 + L2 LINE L2 3016 3055 -217 1585 163 17 10 chr12 62449345 62449633 -81336822 - AluJo SINE Alu -14 298 9 1998 90 38 7 chr12 62449675 62449964 -81336491 + AluSg SINE Alu 1 298 -12 967 87 24 0 chr12 62449975 62450102 -81336353 + AluSg SINE Alu 2 131 -179 4784 52 2 9 chr12 62450106 62450746 -81335709 + SVA Other Other 21 655 -731 770 218 13 39 chr12 62451222 62451456 -81334999 - AluSx SINE Alu -83 229 2 1740 141 36 10 chr12 62451487 62451791 -81334664 - AluSx SINE Alu 0 312 1 2030 123 0 7 chr12 62451889 62452189 -81334266 - AluSx SINE Alu -14 298 1 1374 185 57 27 chr12 62452337 62452635 -81333820 - AluJo SINE Alu -5 307 1 2109 71 17 10 chr12 62453212 62453507 -81332948 - AluSx SINE Alu -5 307 11 1471 167 21 21 chr12 62453526 62453807 -81332648 + AluJb SINE Alu 1 281 -31 277 105 0 0 chr12 62453809 62453847 -81332608 - U2 snRNA snRNA -150 38 1 189 0 0 0 chr12 62453859 62453880 -81332575 + (A)n Simple_repeat Simple_repeat 1 21 0 2034 89 52 0 chr12 62453881 62454172 -81332283 + AluSp SINE Alu 1 306 -7 875 302 145 50 chr12 62454246 62454678 -81331777 - L2 LINE L2 -835 2479 2089 820 138 23 15 chr12 62454678 62454808 -81331647 + FLAM_C SINE Alu 3 133 0 875 302 145 50 chr12 62454808 62455459 -81330996 - L2 LINE L2 -1225 2089 1293 272 329 108 26 chr12 62455506 62455589 -81330866 - L2 LINE L2 -281 2991 2916 1384 207 14 10 chr12 62455589 62455884 -81330571 + AluJo SINE Alu 1 296 -16 1974 135 0 3 chr12 62455887 62456190 -81330265 + AluSg SINE Alu 1 302 -8 272 329 108 26 chr12 62456190 62456466 -81329989 - L2 LINE L2 -357 2915 2594 1889 123 17 20 chr12 62456467 62456768 -81329687 + AluSx SINE Alu 1 300 -12 450 332 39 14 chr12 62456770 62456978 -81329477 - MLT1I LTR MaLR -2 407 195 272 269 223 18 chr12 62457082 62457364 -81329091 - L2 LINE L2 -799 2515 2176 337 262 56 32 chr12 62457769 62457895 -81328560 - MIR SINE MIR -57 205 77 1685 109 74 0 chr12 62457929 62458185 -81328270 - AluSx SINE Alu -13 299 25 2048 100 7 32 chr12 62458191 62458501 -81327954 - AluSg SINE Alu -8 302 1 1626 156 11 4 chr12 62458525 62458801 -81327654 - AluSg SINE Alu -32 278 1 335 309 8 0 chr12 62458915 62459038 -81327417 - L1MC4 LINE L1 -1 8041 7918 187 200 17 17 chr12 62459044 62459104 -81327351 + CT-rich Low_complexity Low_complexity 2 61 0 1358 249 108 23 chr12 62459151 62459669 -81326786 - L1MC4 LINE L1 -141 7901 7340 241 195 0 0 chr12 62459682 62459723 -81326732 - L1MC4 LINE L1 -676 7366 7326 389 226 36 36 chr12 62459776 62459913 -81326542 - L1MC4a LINE L1 -570 7238 7102 693 118 0 10 chr12 62459931 62460033 -81326422 - U6 snRNA snRNA -6 101 1 1090 208 61 99 chr12 62460049 62460444 -81326011 - L1MC4 LINE L1 -870 7172 6793 2163 110 7 0 chr12 62460469 62460778 -81325677 - AluSq SINE Alu -2 311 1 807 188 0 0 chr12 62460787 62460920 -81325535 - FLAM_C SINE Alu 0 133 1 2172 103 3 10 chr12 62461051 62461362 -81325093 - AluY SINE Alu -2 309 1 1080 56 7 21 chr12 62461365 62461508 -81324947 - AluSg SINE Alu -169 141 1 2007 127 7 10 chr12 62461666 62461973 -81324482 - AluSx SINE Alu -6 306 1 1949 164 41 19 chr12 62462072 62462438 -81324017 - THE1C LTR MaLR 0 375 2 1323 141 169 16 chr12 62462781 62463030 -81323425 + AluSx SINE Alu 13 299 -13 1600 193 3 3 chr12 62463362 62463662 -81322793 - AluJo SINE Alu -12 300 1 207 0 0 0 chr12 62463890 62463913 -81322542 + (T)n Simple_repeat Simple_repeat 1 23 0 237 65 0 0 chr12 62464685 62464716 -81321739 + (T)n Simple_repeat Simple_repeat 1 31 0 450 174 10 41 chr12 62465367 62465465 -81320990 - MSTD LTR MaLR -202 194 100 834 144 8 0 chr12 62465649 62465781 -81320674 - AluSq/x SINE Alu -180 133 1 491 171 91 71 chr12 62465781 62465866 -81320589 - L1MC5 LINE L1 -174 7787 7705 1639 177 0 20 chr12 62465866 62465999 -81320456 + AluJo SINE Alu 4 138 -174 1873 144 0 7 chr12 62465999 62466297 -81320158 + AluSx SINE Alu 1 296 -16 1639 177 0 20 chr12 62466297 62466468 -81319987 + AluJo SINE Alu 138 302 -10 491 171 91 71 chr12 62466468 62466525 -81319930 - L1MC5 LINE L1 -256 7705 7651 2242 102 0 3 chr12 62466525 62466830 -81319625 + AluSg SINE Alu 1 304 -6 491 171 91 71 chr12 62466830 62466938 -81319517 - L1MC5 LINE L1 -310 7651 7531 5188 111 111 17 chr12 62467101 62468135 -81318320 + pTR5 LTR ERV1 749 2028 -410 349 234 11 0 chr12 62468136 62468230 -81318225 + LTR30 LTR ERV1 548 642 -80 1657 77 0 9 chr12 62468233 62468454 -81318001 + pTR5 LTR ERV1 172 390 -2048 699 170 57 0 chr12 62468480 62468639 -81317816 + Charlie1 DNA MER1_type 2594 2761 0 200 367 86 0 chr12 62468642 62468770 -81317685 - L2 LINE L2 -887 2427 2289 2152 103 0 10 chr12 62468929 62469231 -81317224 - AluSq SINE Alu -14 299 1 2995 83 15 55 chr12 62469273 62469730 -81316725 - MER83 LTR ERV1 -9 439 1 218 286 43 43 chr12 62470167 62470237 -81316218 - L2 LINE L2 0 3272 3203 763 243 14 95 chr12 62471082 62471378 -81315077 + L1MEc LINE L1 39 310 -6086 1642 189 7 0 chr12 62471378 62471679 -81314776 + AluJo SINE Alu 1 303 -9 2175 112 3 3 chr12 62471692 62472005 -81314450 + AluSq SINE Alu 1 313 0 2837 208 66 41 chr12 62472007 62472738 -81313717 + L1MD2 LINE L1 5601 6349 -10 229 259 86 17 chr12 62472727 62472843 -81313612 + L1MEc LINE L1 861 984 -5412 * 1721 114 0 4 chr12 62472843 62473089 -81313366 + AluSq SINE Alu 1 245 -68 428 148 0 49 chr12 62473089 62473170 -81313285 - FRAM/FAM SINE Alu -102 74 1 1845 142 59 0 chr12 62473212 62473517 -81312938 - MER1B DNA MER1_type 0 339 1 729 110 28 0 chr12 62473553 62473662 -81312793 - AluSp/q SINE Alu -9 304 193 1060 118 18 18 chr12 62473697 62473867 -81312588 + AluSp SINE Alu 1 170 -143 724 127 76 0 chr12 62473967 62474124 -81312331 - AluSc SINE Alu -134 175 7 1950 135 3 0 chr12 62474130 62474427 -81312028 - AluSx SINE Alu -14 298 1 435 177 0 0 chr12 62474448 62474527 -81311928 + FAM SINE Alu 102 180 -5 1670 208 145 4 chr12 62474535 62475031 -81311424 + L1MEc LINE L1 994 1559 -4658 1950 137 17 3 chr12 62475042 62475342 -81311113 + AluSx SINE Alu 1 304 -8 1113 101 184 34 chr12 62475351 62475558 -81310897 + AluSq SINE Alu 4 241 -72 304 157 0 57 chr12 62475559 62475629 -81310826 + L1MA10 LINE L1 6269 6334 0 1991 96 27 10 chr12 62475951 62476244 -81310211 + AluSg SINE Alu 1 298 -12 1964 99 14 10 chr12 62476248 62476542 -81309913 + AluSp SINE Alu 1 295 -18 488 94 0 0 chr12 62476542 62476606 -81309849 - AluS SINE Alu -248 65 2 612 231 48 0 chr12 62476627 62476774 -81309681 + MIR SINE MIR 109 262 0 2153 91 0 3 chr12 62477185 62477511 -81308944 + AluSx SINE Alu 1 325 0 2049 97 10 23 chr12 62477524 62477823 -81308632 + AluSc SINE Alu 1 295 -14 1877 144 0 20 chr12 62477833 62478138 -81308317 + AluSq SINE Alu 1 299 -14 1896 99 3 73 chr12 62478930 62479256 -81307199 + AluSg SINE Alu 1 305 0 4978 28 0 2 chr12 62479845 62480417 -81306038 + L1PA5 LINE L1 5576 6146 -8 6162 73 11 34 chr12 62481057 62482558 -81303897 + SVA Other Other 37 1386 0 1331 99 0 0 chr12 62482561 62482743 -81303712 + AluSg/x SINE Alu 129 310 -2 2124 109 0 3 chr12 62482804 62483098 -81303357 + AluSx SINE Alu 1 293 -19 404 34 103 8 chr12 62483109 62483226 -81303229 + (TA)n Simple_repeat Simple_repeat 2 129 0 2151 112 0 3 chr12 62484078 62484383 -81302072 + AluSx SINE Alu 1 304 -8 197 267 23 105 chr12 62484539 62484625 -81301830 - L2 LINE L2 -8 3264 3186 1865 123 0 75 chr12 62484633 62484967 -81301488 - AluSg SINE Alu -1 309 1 1950 129 7 10 chr12 62485300 62485602 -81300853 + AluSx SINE Alu 1 301 -11 870 204 19 0 chr12 62485757 62485919 -81300536 - L1MC4 LINE L1 -1085 6957 6793 1618 132 35 35 chr12 62485944 62486254 -81300201 - AluSq SINE Alu -2 311 2 1851 123 34 7 chr12 62486265 62486557 -81299898 - AluSx SINE Alu -12 300 1 2054 114 7 3 chr12 62486568 62486867 -81299588 - AluSq SINE Alu -12 301 2 586 185 25 0 chr12 62486867 62486986 -81299469 - Charlie1 DNA MER1_type -744 2017 1896 696 226 117 80 chr12 62487002 62487378 -81299077 - MLT1H LTR MaLR -69 480 91 489 204 0 11 chr12 62488040 62488133 -81298322 + AluSp/q SINE Alu 159 250 -63 1210 149 0 18 chr12 62488133 62488355 -81298100 + AluSq SINE Alu 85 302 -11 226 170 21 21 chr12 62488364 62488411 -81298044 - MLT1H1-int LTR MaLR -1320 51 5 508 241 116 62 chr12 62488415 62488493 -81297962 - MLT1H1 LTR MaLR 0 555 483 2016 128 3 0 chr12 62488493 62488790 -81297665 - AluSx SINE Alu -14 298 1 508 241 116 62 chr12 62488790 62489156 -81297299 - MLT1H1 LTR MaLR -72 483 22 1028 127 0 0 chr12 62489520 62489670 -81296785 + AluSx SINE Alu 5 154 -158 1045 91 0 0 chr12 62489959 62490091 -81296364 + AluSq/x SINE Alu 1 132 -181 2129 99 0 10 chr12 62490097 62490401 -81296054 + AluSc SINE Alu 2 302 -7 1757 138 0 33 chr12 62490412 62490716 -81295739 + AluJb SINE Alu 1 294 -18 1019 113 0 0 chr12 62692006 62692139 -81094316 - AluSq/x SINE Alu -180 133 1 450 304 115 32 chr12 62692166 62692479 -81093976 - MLT1I LTR MaLR 0 409 71 4055 132 11 2 chr12 62692628 62693257 -81093198 - MER41B LTR ERV1 0 635 1 203 88 29 0 chr12 62696102 62696136 -81090319 + (GGA)n Simple_repeat Simple_repeat 1 35 0 414 0 0 0 chr12 62697074 62697120 -81089335 + (CA)n Simple_repeat Simple_repeat 2 47 0 402 293 158 0 chr12 62698702 62698924 -81087531 - MIR SINE MIR -1 261 5 246 310 121 0 chr12 62698927 62699043 -81087412 + L2 LINE L2 3183 3312 -1 626 265 85 40 chr12 62699834 62700057 -81086398 + MIR SINE MIR 28 260 -2 233 267 81 12 chr12 62701371 62701457 -81084998 - MER20B DNA MER1_type -576 207 116 1543 191 64 14 chr12 62701459 62701805 -81084650 - MLT1A1 LTR MaLR -2 363 1 253 294 15 0 chr12 62701814 62701882 -81084573 - MER20B DNA MER1_type -667 116 48 2043 154 0 3 chr12 62702329 62702634 -81083821 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 62702953 62702978 -81083477 + AT_rich Low_complexity Low_complexity 1 25 0 286 266 121 58 chr12 62703763 62703936 -81082519 - L3 LINE CR1 -228 1349 1166 723 230 110 0 chr12 62704412 62704603 -81081852 - MIR SINE MIR 0 262 51 2143 91 0 18 chr12 62704694 62704980 -81081475 - AluY SINE Alu -10 301 21 338 291 47 0 chr12 62705408 62705494 -81080961 - L2 LINE L2 -9 3304 3215 357 287 66 61 chr12 62705670 62705851 -81080604 + MIR SINE MIR 21 202 -60 264 185 0 0 chr12 62706668 62706722 -81079733 + (TG)n Simple_repeat Simple_repeat 1 54 0 851 223 61 5 chr12 62706814 62707011 -81079444 + MER58A DNA MER1_type 2 209 -15 394 301 65 32 chr12 62707546 62707732 -81078723 - MIR SINE MIR -1 261 70 1635 221 87 80 chr12 62708847 62709481 -81076974 - LTR48B LTR ERV1 0 644 7 1446 178 34 4 chr12 62710716 62710985 -81075470 - MLT1A1 LTR MaLR 0 365 89 2258 140 11 19 chr12 62710985 62711363 -81075092 - THE1C LTR MaLR 0 375 1 9482 137 40 7 chr12 62711363 62712892 -81073563 - THE1C-int LTR MaLR 0 1580 1 627 124 10 0 chr12 62712892 62712989 -81073466 - THE1C LTR MaLR 0 364 267 681 237 36 40 chr12 62713094 62713318 -81073137 - MLT1D LTR MaLR -168 337 115 398 232 21 0 chr12 62713302 62713397 -81073058 + MLT1A1 LTR MaLR 269 365 0 * 1900 71 0 4 chr12 62713424 62713662 -81072793 + AluY SINE Alu 66 302 -9 24 0 0 0 chr12 62713710 62713734 -81072721 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr12 62713975 62714003 -81072452 + AT_rich Low_complexity Low_complexity 1 28 0 429 224 158 0 chr12 62714030 62714182 -81072273 + L1MC4a LINE L1 5844 6019 -1789 283 314 138 19 chr12 62714448 62714607 -81071848 + MER5A DNA MER1_type 1 178 -11 2521 139 53 83 chr12 62714927 62715458 -81070997 - MLT2B2 LTR ERVL 0 515 1 239 303 13 0 chr12 62715506 62715582 -81070873 + LTR67 LTR ERVL 2 78 -479 448 229 20 52 chr12 62715694 62715847 -81070608 + LTR67 LTR ERVL 403 550 -7 635 313 38 58 chr12 62715855 62716168 -81070287 + L3 LINE CR1 833 1139 -438 1863 119 26 15 chr12 62716392 62716703 -81069752 + AluSx SINE Alu 12 325 0 188 232 101 43 chr12 62716704 62716773 -81069682 + L3 LINE CR1 1451 1523 -54 221 75 75 0 chr12 62716787 62716840 -81069615 + (TA)n Simple_repeat Simple_repeat 2 58 0 2551 50 0 0 chr12 62717863 62718165 -81068290 - AluY SINE Alu -9 302 1 22 0 0 0 chr12 62718717 62718739 -81067716 + AT_rich Low_complexity Low_complexity 1 22 0 1540 205 49 23 chr12 62719402 62719788 -81066667 + MSTD LTR MaLR 1 396 0 248 237 17 0 chr12 62719907 62719966 -81066489 + L2 LINE L2 2153 2212 -1102 202 245 20 0 chr12 62719966 62720015 -81066440 + L2 LINE L2 2183 2232 -1082 202 29 57 0 chr12 62720039 62720074 -81066381 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1817 155 29 0 chr12 62720077 62720354 -81066101 - AluSx SINE Alu -18 294 10 209 106 0 21 chr12 62720450 62720497 -81065958 + (TA)n Simple_repeat Simple_repeat 2 47 0 405 329 82 10 chr12 62720497 62720704 -81065751 + L2 LINE L2 2337 2558 -756 450 0 0 0 chr12 62720871 62720921 -81065534 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 1788 170 3 3 chr12 62721157 62721466 -81064989 - AluJb SINE Alu 0 309 1 248 339 99 51 chr12 62721593 62721968 -81064487 + L2 LINE L2 2912 3304 -9 2494 149 15 25 chr12 62722084 62722559 -81063896 + L1MC1 LINE L1 5864 6333 0 23 86 0 0 chr12 62722868 62722926 -81063529 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr12 62723363 62723393 -81063062 + AT_rich Low_complexity Low_complexity 1 30 0 1971 148 0 0 chr12 62724036 62724327 -81062128 + AluSx SINE Alu 1 291 -21 341 298 101 0 chr12 62724761 62724939 -81061516 + L1ME3 LINE L1 1512 1707 -4689 23 0 0 0 chr12 62725037 62725060 -81061395 + AT_rich Low_complexity Low_complexity 1 23 0 696 298 71 23 chr12 62725200 62726170 -81060285 + L1ME3 LINE L1 4974 5994 -237 30 77 0 0 chr12 62726587 62726652 -81059803 + AT_rich Low_complexity Low_complexity 1 65 0 280 340 201 0 chr12 62727250 62727518 -81058937 + L2 LINE L2 2000 2321 -993 218 171 0 0 chr12 62727708 62727743 -81058712 + (CAT)n Simple_repeat Simple_repeat 1 35 0 3321 85 0 11 chr12 62727949 62728396 -81058059 - MLT2A1 LTR ERVL -2 442 1 20658 70 6 0 chr12 62728396 62731010 -81055445 - HERVL-A1 LTR ERVL 0 5654 3026 797 121 23 15 chr12 62731003 62731135 -81055320 + HERVL LTR ERVL 2081 2213 -3441 * 340 207 18 0 chr12 62731176 62731287 -81055168 + (TA)n Simple_repeat Simple_repeat 1 113 0 308 303 22 0 chr12 62731289 62731378 -81055077 - L1MC4 LINE L1 -1339 6703 6613 405 229 0 0 chr12 62731379 62731510 -81054945 + (TA)n Simple_repeat Simple_repeat 1 131 0 2917 79 10 22 chr12 62731513 62731918 -81054537 - MLT2A1 LTR ERVL -44 400 1 797 253 129 32 chr12 62732063 62732350 -81054105 + Charlie4a DNA MER1_type 2 348 -1613 2096 136 3 0 chr12 62732350 62732644 -81053811 + AluSx SINE Alu 1 295 -17 797 253 129 32 chr12 62732644 62732798 -81053657 + Charlie4a DNA MER1_type 348 486 -22 1551 183 143 13 chr12 62733379 62733772 -81052683 - LTR54B LTR ERV1 -34 464 21 2313 93 0 16 chr12 62734049 62734360 -81052095 + AluSg SINE Alu 1 306 -4 293 345 127 63 chr12 62734513 62734907 -81051548 - L2 LINE L2 -38 3234 2816 237 297 51 25 chr12 62734916 62735034 -81051421 - MER94 DNA DNA -1 133 13 818 293 59 63 chr12 62735070 62735247 -81051208 - MLT1J LTR MaLR -1 510 334 2272 188 188 10 chr12 62735247 62735847 -81050608 - MER39 LTR ERV1 0 707 1 818 293 59 63 chr12 62735847 62736177 -81050278 - MLT1J LTR MaLR -177 334 5 1228 337 94 34 chr12 62736196 62737122 -81049333 - L2 LINE L2 -541 2773 1792 1551 204 4 4 chr12 62737163 62737442 -81049013 + AluJo SINE Alu 6 284 -28 243 0 0 0 chr12 62739321 62739348 -81047107 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 857 48 0 0 chr12 62739348 62739453 -81047002 - L1PA5 LINE L1 -11 6143 6039 647 281 61 40 chr12 62739479 62739709 -81046746 - MIR SINE MIR -27 235 3 404 323 86 14 chr12 62739929 62740149 -81046306 + MIR SINE MIR 14 249 -13 203 382 0 39 chr12 62741177 62741279 -81045176 - L2 LINE L2 -640 2674 2577 405 238 7 0 chr12 62741871 62742021 -81044434 + L1ME1 LINE L1 5964 6161 -5 23 0 0 0 chr12 62742076 62742099 -81044356 + AT_rich Low_complexity Low_complexity 1 23 0 2006 327 57 41 chr12 62742467 62743845 -81042610 - ERVL LTR ERVL -787 4209 3155 2036 313 34 27 chr12 62744310 62745099 -81041356 - ERVL LTR ERVL -1903 3093 2299 224 0 65 0 chr12 62745130 62745161 -81041294 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 857 141 0 67 chr12 62745165 62745314 -81041141 - U4 snRNA snRNA -1 144 6 1497 195 53 26 chr12 62745417 62745756 -81040699 + MLT1A2 LTR MaLR 9 356 -18 951 240 75 26 chr12 62745750 62746083 -81040372 + MLT1E2 LTR MaLR 199 615 -39 * 853 275 145 26 chr12 62746081 62746420 -81040035 + MLT1G LTR MaLR 154 542 -48 * 1628 190 7 3 chr12 62746506 62746795 -81039660 - AluJo SINE Alu -22 290 1 6099 113 20 17 chr12 62747281 62748233 -81038222 + Tigger1 DNA MER2_type 1267 2221 -197 1732 0 0 0 chr12 62748239 62748434 -81038021 - L1PA2 LINE L1 -3 6152 5958 3889 9 0 0 chr12 62748434 62748869 -81037586 + L1PA2 LINE L1 5499 5933 -222 1033 175 9 28 chr12 62748869 62749080 -81037375 + Tigger1 DNA MER2_type 2212 2418 0 224 285 85 46 chr12 62750544 62750674 -81035781 + MIR SINE MIR 125 259 -3 1491 140 60 0 chr12 62751978 62752213 -81034242 - AluSq SINE Alu -64 249 1 853 223 45 73 chr12 62752425 62752579 -81033876 + MLT1A1 LTR MaLR 1 158 -207 1947 96 0 63 chr12 62752579 62752919 -81033536 + AluY SINE Alu 1 321 0 853 223 45 73 chr12 62752919 62753174 -81033281 + MLT1A1 LTR MaLR 158 363 -2 29 78 0 0 chr12 62754330 62754394 -81032061 + AT_rich Low_complexity Low_complexity 1 64 0 306 348 43 22 chr12 62757171 62757309 -81029146 - L3 LINE CR1 -27 1550 1410 726 284 68 9 chr12 62757677 62757899 -81028556 - MIR SINE MIR 0 262 28 23 54 0 0 chr12 62759543 62759580 -81026875 + AT_rich Low_complexity Low_complexity 1 37 0 324 274 144 61 chr12 62760289 62760552 -81025903 - L1M4 LINE L1 -811 5335 5051 770 266 19 10 chr12 62760561 62760768 -81025687 + MER3 DNA MER1_type 1 209 0 450 36 0 0 chr12 62760923 62760979 -81025476 + (TG)n Simple_repeat Simple_repeat 1 56 0 432 264 114 62 chr12 62760980 62761549 -81024906 - L1M4 LINE L1 -1303 4843 4245 23 0 0 0 chr12 62761873 62761896 -81024559 + AT_rich Low_complexity Low_complexity 1 23 0 384 325 104 59 chr12 62762256 62762615 -81023840 - L1MEd LINE L1 -5348 771 371 348 94 0 0 chr12 62762615 62762668 -81023787 + (TG)n Simple_repeat Simple_repeat 2 54 0 384 325 104 59 chr12 62762668 62762932 -81023523 - L1MEd LINE L1 -5748 371 120 731 253 19 42 chr12 62763302 62763563 -81022892 + MIR SINE MIR 5 259 -3 413 293 22 39 chr12 62764316 62764509 -81021946 - MIR SINE MIR -57 151 7 27 0 0 0 chr12 62765765 62765792 -81020663 + AT_rich Low_complexity Low_complexity 1 27 0 224 370 179 3 chr12 62765816 62766113 -81020342 + L2 LINE L2 2406 2754 -560 245 385 52 56 chr12 62766262 62766493 -81019962 + L2 LINE L2 2932 3161 -111 297 151 0 0 chr12 62766515 62766568 -81019887 + (TG)n Simple_repeat Simple_repeat 2 54 0 222 306 48 0 chr12 62766575 62766637 -81019818 + L2 LINE L2 3249 3313 0 1742 183 19 35 chr12 62766791 62767163 -81019292 - MLT1A2 LTR MaLR -5 369 4 389 275 104 17 chr12 62768238 62768428 -81018027 + MIR SINE MIR 38 244 -18 1693 98 95 0 chr12 62769417 62769681 -81016774 - L1PA10 LINE L1 -3 6165 5877 192 135 0 0 chr12 62769774 62769811 -81016644 + (TG)n Simple_repeat Simple_repeat 1 37 0 385 151 244 0 chr12 62770241 62770325 -81016130 - MER20 DNA MER1_type -4 215 111 728 262 36 0 chr12 62770325 62770493 -81015962 - MER96 DNA MER1_type? 0 175 2 475 214 68 0 chr12 62770494 62770597 -81015858 - MER20 DNA MER1_type -101 118 9 1513 142 79 57 chr12 62771463 62771830 -81014625 - THE1C LTR MaLR 0 375 1 384 279 142 25 chr12 62771832 62772036 -81014419 - MIR SINE MIR -23 239 12 2444 170 52 11 chr12 62772193 62772657 -81013798 - MER31A LTR ERV1 0 485 3 21 36 0 0 chr12 62773936 62773964 -81012491 + AT_rich Low_complexity Low_complexity 1 28 0 860 207 7 0 chr12 62774338 62774508 -81011947 - AluJb SINE Alu 0 303 133 1010 107 19 93 chr12 62775365 62775570 -81010885 - MER39 LTR ERV1 0 707 518 2199 195 18 0 chr12 62775574 62775958 -81010497 + MSTD LTR MaLR 4 394 -2 966 192 25 20 chr12 62775978 62776256 -81010199 - MER39 LTR ERV1 -188 519 189 195 375 77 0 chr12 62776297 62776401 -81010054 - MIR SINE MIR -63 145 34 1623 174 7 10 chr12 62777274 62777562 -81008893 - AluJo SINE Alu -25 287 1 1296 270 69 35 chr12 62777584 62778018 -81008437 - MER21B LTR ERV1 -52 811 363 26 0 0 0 chr12 62778869 62778895 -81007560 + AT_rich Low_complexity Low_complexity 1 26 0 190 329 94 12 chr12 62779169 62779254 -81007201 + L2 LINE L2 3197 3288 -25 289 372 44 6 chr12 62780255 62780438 -81006017 + L2 LINE L2 3124 3313 0 396 323 132 5 chr12 62780970 62781190 -81005265 - MIR SINE MIR -14 248 1 328 238 232 24 chr12 62781294 62781462 -81004993 - L2 LINE L2 -1 3312 3110 204 128 21 43 chr12 62782038 62782085 -81004370 + A-rich Low_complexity Low_complexity 1 46 0 1921 151 20 0 chr12 62782161 62782459 -81003996 + AluSx SINE Alu 3 306 -6 1926 134 111 18 chr12 62783182 62783525 -81002930 + THE1C LTR MaLR 1 375 0 9851 124 36 9 chr12 62783525 62785064 -81001391 + THE1C-int LTR MaLR 1 1580 0 2393 110 21 19 chr12 62785064 62785438 -81001017 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr12 62785607 62785628 -81000827 + AT_rich Low_complexity Low_complexity 1 21 0 1574 160 0 39 chr12 62785646 62785954 -81000501 + AluJb SINE Alu 12 308 0 217 365 85 16 chr12 62786272 62786461 -80999994 - MIR SINE MIR -7 255 54 1961 138 0 0 chr12 62787541 62787824 -80998631 + AluSq SINE Alu 1 283 -30 290 275 138 29 chr12 62788303 62788441 -80998014 + MIR SINE MIR 36 188 -74 274 282 56 0 chr12 62788443 62788514 -80997941 - L3 LINE CR1 -161 1416 1342 638 306 0 0 chr12 62788545 62788731 -80997724 - LTR16B LTR ERVL -278 186 1 27 29 0 0 chr12 62791382 62791416 -80995039 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr12 62791953 62791998 -80994457 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr12 62792131 62792177 -80994278 + AT_rich Low_complexity Low_complexity 1 46 0 273 288 79 65 chr12 62792229 62792368 -80994087 - MIR SINE MIR -34 228 88 240 149 0 0 chr12 62792550 62792597 -80993858 + (CA)n Simple_repeat Simple_repeat 2 48 0 203 294 108 20 chr12 62793314 62793416 -80993039 + MIR SINE MIR 81 191 -71 21 57 0 0 chr12 62793425 62793460 -80992995 + AT_rich Low_complexity Low_complexity 1 35 0 238 321 63 38 chr12 62793649 62793820 -80992635 - MIR SINE MIR -62 146 18 1503 205 131 30 chr12 62794084 62794543 -80991912 + MLT1D LTR MaLR 1 505 0 612 250 146 32 chr12 62794754 62794974 -80991481 + MIR SINE MIR 18 262 0 21 89 0 0 chr12 62795083 62795139 -80991316 + AT_rich Low_complexity Low_complexity 1 56 0 863 203 0 11 chr12 62797152 62797329 -80989126 - L1PB4 LINE L1 -17 6139 5965 244 185 0 31 chr12 62797915 62797980 -80988475 + T-rich Low_complexity Low_complexity 3 65 0 1081 155 24 44 chr12 62798384 62798590 -80987865 + AluJo SINE Alu 85 286 -26 21 0 0 0 chr12 62800165 62800186 -80986269 + AT_rich Low_complexity Low_complexity 1 21 0 324 358 68 27 chr12 62801914 62802135 -80984320 + MIR SINE MIR 20 249 -13 22 56 0 0 chr12 62803320 62803356 -80983099 + AT_rich Low_complexity Low_complexity 1 36 0 250 232 29 0 chr12 62803616 62803685 -80982770 + (TA)n Simple_repeat Simple_repeat 2 72 0 360 43 0 0 chr12 62803689 62803735 -80982720 + (TG)n Simple_repeat Simple_repeat 2 47 0 200 225 250 0 chr12 62803971 62804051 -80982404 - MIR SINE MIR -65 143 44 2448 125 14 0 chr12 62804325 62804684 -80981771 + THE1B LTR MaLR 1 364 0 9303 126 40 48 chr12 62804684 62804787 -80981668 + THE1B-int LTR MaLR 1 103 -1477 2551 99 6 0 chr12 62804787 62805140 -80981315 - THE1A LTR MaLR 0 355 1 9303 126 40 48 chr12 62805140 62806630 -80979825 + THE1B-int LTR MaLR 103 1580 0 2083 126 70 3 chr12 62806630 62806971 -80979484 + THE1B LTR MaLR 1 364 0 297 0 0 0 chr12 62807527 62807560 -80978895 + (CA)n Simple_repeat Simple_repeat 1 33 0 223 360 18 9 chr12 62807621 62807732 -80978723 + MIR SINE MIR 36 147 -61 1500 244 56 14 chr12 62807833 62808264 -80978191 - MLT1C LTR MaLR -9 458 10 1726 229 55 48 chr12 62808292 62808725 -80977730 - MLT1C-int LTR MaLR -14 1357 922 575 264 140 16 chr12 62808801 62808994 -80977461 - MLT1C-int LTR MaLR -448 923 707 401 276 45 12 chr12 62809173 62809378 -80977077 - L1ME3 LINE L1 -333 5829 5609 213 39 0 0 chr12 62809527 62809553 -80976902 + (TC)n Simple_repeat Simple_repeat 2 27 0 438 186 0 0 chr12 62809553 62809639 -80976816 + (TA)n Simple_repeat Simple_repeat 2 87 0 230 235 47 24 chr12 62809641 62809726 -80976729 - L1MC4 LINE L1 -1341 6701 6615 489 260 48 67 chr12 62811317 62811525 -80974930 + MER105 DNA DNA 1 204 0 406 283 35 41 chr12 62811542 62811687 -80974768 + L2 LINE L2 3168 3311 -2 258 222 32 48 chr12 62812353 62812416 -80974039 - MLT1H LTR MaLR -258 291 230 810 217 161 46 chr12 62812524 62812847 -80973608 + MLT1A1 LTR MaLR 1 360 -5 23 0 0 0 chr12 62813272 62813295 -80973160 + AT_rich Low_complexity Low_complexity 1 23 0 6412 176 70 27 chr12 62815156 62816687 -80969768 - MER52A LTR ERV1 0 1755 1 359 315 0 37 chr12 62816951 62817059 -80969396 + L2 LINE L2 3169 3272 0 272 265 12 24 chr12 62817982 62818065 -80968390 + L2 LINE L2 3232 3313 0 23 54 0 0 chr12 62819629 62819666 -80966789 + AT_rich Low_complexity Low_complexity 1 37 0 2143 97 17 0 chr12 62820078 62820367 -80966088 + AluSp SINE Alu 1 294 -19 181 353 14 69 chr12 62820596 62820814 -80965641 - L2 LINE L2 -584 2730 2525 23 33 0 0 chr12 62822037 62822067 -80964388 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 62823135 62823158 -80963297 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr12 62823380 62823406 -80963049 + (T)n Simple_repeat Simple_repeat 1 26 0 256 351 53 8 chr12 62823577 62823708 -80962747 - MIR3 SINE MIR -3 205 69 1331 138 61 0 chr12 62824117 62824364 -80962091 + L1MA8 LINE L1 6027 6288 -3 429 290 54 102 chr12 62824864 62825199 -80961256 - MLT1I LTR MaLR -14 395 77 214 373 13 0 chr12 62825719 62825794 -80960661 + MIR3 SINE MIR 88 163 -45 265 311 41 10 chr12 62826333 62826529 -80959926 - L1ME4a LINE L1 -188 5933 5732 797 220 136 79 chr12 62827602 62828133 -80958322 - MER34B LTR ERV1 0 565 5 22 56 0 0 chr12 62828378 62828414 -80958041 + AT_rich Low_complexity Low_complexity 1 36 0 2355 111 35 44 chr12 62828480 62828911 -80957544 - LTR23 LTR ERV1 -10 427 1 357 277 79 45 chr12 62828921 62829098 -80957357 - L1MC4a LINE L1 -1876 5932 5750 945 211 111 85 chr12 62829241 62829663 -80956792 - MLT1D LTR MaLR 0 467 31 571 214 29 21 chr12 62829707 62829847 -80956608 - Tigger4(Zombi) DNA MER2_type -2590 141 1 182 411 11 0 chr12 62831166 62831256 -80955199 + MIR SINE MIR 53 143 -65 21 57 0 0 chr12 62831296 62831331 -80955124 + AT_rich Low_complexity Low_complexity 1 35 0 1424 220 34 24 chr12 62831640 62832018 -80954437 - L1MA10 LINE L1 -3 6331 5950 24 0 0 0 chr12 62832365 62832389 -80954066 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 62833281 62833303 -80953152 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr12 62833315 62833359 -80953096 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr12 62833459 62833497 -80952958 + AT_rich Low_complexity Low_complexity 1 38 0 212 241 25 13 chr12 62835610 62835689 -80950766 + (TA)n Simple_repeat Simple_repeat 1 80 0 1696 238 60 17 chr12 62835699 62836182 -80950273 + HsTC2a DNA Tc2 4 507 -237 333 250 58 52 chr12 62836260 62836432 -80950023 + L1ME4a LINE L1 5932 6104 -17 488 256 121 19 chr12 62836584 62836791 -80949664 + L1ME LINE L1 5325 5555 -615 2975 209 46 10 chr12 62836987 62837615 -80948840 - MER82 DNA MER2_type -2 651 1 26 0 0 0 chr12 62837663 62837689 -80948766 + AT_rich Low_complexity Low_complexity 1 26 0 61 45 0 0 chr12 62837732 62837821 -80948634 + AT_rich Low_complexity Low_complexity 1 89 0 24 77 0 0 chr12 62837854 62837906 -80948549 + AT_rich Low_complexity Low_complexity 1 52 0 182 61 0 61 chr12 62837911 62837944 -80948511 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 305 245 49 39 chr12 62838145 62838247 -80948208 - MIR SINE MIR -6 256 154 291 291 99 21 chr12 62838491 62838632 -80947823 - MIR SINE MIR -56 206 55 215 367 11 11 chr12 62838920 62839010 -80947445 + MIR SINE MIR 58 147 -115 21 82 0 0 chr12 62839032 62839081 -80947374 + AT_rich Low_complexity Low_complexity 1 49 0 238 0 0 0 chr12 62840713 62840744 -80945711 + L1MA7 LINE L1 6232 6262 -29 23 33 0 0 chr12 62840808 62840838 -80945617 + AT_rich Low_complexity Low_complexity 1 30 0 470 157 0 0 chr12 62840911 62840994 -80945461 - FRAM SINE Alu -25 151 69 944 173 25 5 chr12 62840994 62841196 -80945259 + L1MA9 LINE L1 6082 6287 -25 2194 119 7 0 chr12 62841206 62841516 -80944939 + AluSx SINE Alu 1 312 0 23 0 0 0 chr12 62841832 62841855 -80944600 + AT_rich Low_complexity Low_complexity 1 23 0 343 332 121 5 chr12 62843217 62843407 -80943048 - MIR SINE MIR -1 261 50 261 57 0 0 chr12 62843648 62843683 -80942772 + (TG)n Simple_repeat Simple_repeat 2 36 0 554 311 65 27 chr12 62844314 62844574 -80941881 - MLT1J2 LTR MaLR -171 279 10 32 98 0 0 chr12 62844734 62844836 -80941619 + AT_rich Low_complexity Low_complexity 1 102 0 341 315 42 21 chr12 62845507 62845650 -80940805 + MER5A DNA MER1_type 1 146 -43 1437 178 68 4 chr12 62847267 62847531 -80938924 - AluJb SINE Alu -27 285 5 185 158 105 0 chr12 62847732 62847770 -80938685 + MIR SINE MIR 100 141 -67 834 317 61 31 chr12 62848141 62848532 -80937923 + LTR67 LTR ERVL 5 407 -150 1913 148 0 0 chr12 62848723 62849051 -80937404 - AluSx SINE Alu 0 328 1 21 36 0 0 chr12 62849168 62849196 -80937259 + AT_rich Low_complexity Low_complexity 1 28 0 374 341 100 43 chr12 62849554 62849953 -80936502 - L2 LINE L2 0 3272 2851 1576 176 32 86 chr12 62850063 62850297 -80936158 - MLT1B LTR MaLR -4 386 182 2255 104 0 0 chr12 62850297 62850596 -80935859 - AluSx SINE Alu -13 299 1 1576 176 32 86 chr12 62850596 62850769 -80935686 - MLT1B LTR MaLR -208 182 1 2723 249 11 24 chr12 62850853 62851512 -80934943 + MER82 DNA MER2_type 1 650 -3 1738 171 10 3 chr12 62852297 62852607 -80933848 + AluJb SINE Alu 1 312 0 325 282 128 0 chr12 62854141 62854258 -80932197 + MIR SINE MIR 11 142 -120 21 0 0 0 chr12 62855316 62855337 -80931118 + AT_rich Low_complexity Low_complexity 1 21 0 4030 307 122 23 chr12 62856356 62858542 -80927913 + L2 LINE L2 739 3142 -171 785 197 57 21 chr12 62858567 62858760 -80927695 + MER3 DNA MER1_type 7 206 -3 447 186 144 51 chr12 62858784 62858902 -80927553 + L2 LINE L2 3184 3312 -1 218 333 12 12 chr12 62858964 62859045 -80927410 + MIR SINE MIR 57 137 -125 320 281 12 0 chr12 62859051 62859133 -80927322 - L2 LINE L2 -2 3270 3188 640 183 61 6 chr12 62860459 62860623 -80925832 + MER50 LTR ERV1 562 734 0 6722 22 0 0 chr12 62861169 62861954 -80924501 - L1PA3 LINE L1 -1450 4696 3912 7608 23 0 1 chr12 62861954 62863416 -80923039 + L1PA3 LINE L1 4715 6176 0 861 127 7 14 chr12 62863897 62864039 -80922416 + PABL_A LTR ERV1 520 660 0 6090 192 159 41 chr12 62867734 62869303 -80917152 + MER52A LTR ERV1 1 1754 -1 2066 111 3 10 chr12 62869994 62870292 -80916163 - AluSp SINE Alu -17 296 1 200 135 27 0 chr12 62870339 62870376 -80916079 + (TA)n Simple_repeat Simple_repeat 1 38 0 329 333 47 8 chr12 62870471 62870600 -80915855 - MIR3 SINE MIR -38 170 37 257 329 19 19 chr12 62870743 62870859 -80915596 - MIR SINE MIR -65 143 30 204 315 41 0 chr12 62870996 62871069 -80915386 + MIR SINE MIR 76 151 -111 180 0 0 0 chr12 62872011 62872031 -80914424 + (TTA)n Simple_repeat Simple_repeat 2 21 0 998 176 0 12 chr12 62873809 62873979 -80912476 - AluJo/FRAM SINE Alu -13 299 132 312 139 0 0 chr12 62873981 62874024 -80912431 - Alu SINE Alu -258 45 3 880 337 72 47 chr12 62874443 62875235 -80911220 + L2 LINE L2 529 1340 -1974 368 20 20 0 chr12 62875371 62875420 -80911035 + (TA)n Simple_repeat Simple_repeat 2 51 0 2764 6 3 3 chr12 62877570 62877881 -80908574 + AluY SINE Alu 1 311 0 224 285 85 46 chr12 62877893 62878023 -80908432 - MIR SINE MIR -3 259 125 1183 270 65 47 chr12 62878397 62878934 -80907521 - HsTC2a DNA Tc2 -197 547 1 24 0 0 0 chr12 62879746 62879770 -80906685 + AT_rich Low_complexity Low_complexity 1 24 0 254 306 97 16 chr12 62880839 62880963 -80905492 + MIR SINE MIR 68 201 -61 220 338 14 0 chr12 62881327 62881401 -80905054 + MIR SINE MIR 31 105 -157 2202 103 3 0 chr12 62881769 62882060 -80904395 - AluSc SINE Alu -17 292 1 256 130 74 0 chr12 62885553 62885607 -80900848 + L2 LINE L2 3256 3313 0 23 68 0 0 chr12 62885809 62885853 -80900602 + AT_rich Low_complexity Low_complexity 1 44 0 3822 31 2 0 chr12 62885853 62886307 -80900148 - L1PA3 LINE L1 -3 6152 5698 263 301 151 11 chr12 62886980 62887073 -80899382 + MIR3 SINE MIR 4 109 -99 * 321 323 0 10 chr12 62887065 62887161 -80899294 + MIR SINE MIR 160 254 -8 21 36 0 0 chr12 62888404 62888432 -80898023 + AT_rich Low_complexity Low_complexity 1 28 0 764 226 0 13 chr12 62888933 62889092 -80897363 - FAM SINE Alu -13 172 16 22 0 0 0 chr12 62890221 62890243 -80896212 + AT_rich Low_complexity Low_complexity 1 22 0 1550 174 19 4 chr12 62890863 62891127 -80895328 + Tigger7 DNA MER2_type 1 268 -465 889 161 261 14 chr12 62891137 62891355 -80895100 + Tigger7 DNA MER2_type 2216 2487 0 585 208 62 0 chr12 62891366 62891496 -80894959 + MER69 DNA AcHobo 6 143 -1083 21 0 0 0 chr12 62892090 62892111 -80894344 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 62893442 62893470 -80892985 + AT_rich Low_complexity Low_complexity 1 28 0 463 97 28 0 chr12 62893503 62893575 -80892880 - L1MB1 LINE L1 -1 6167 6094 238 192 26 154 chr12 62893652 62893730 -80892725 + Tigger2 DNA MER2_type 2651 2718 0 3444 121 18 20 chr12 62893788 62894349 -80892106 - Tigger2 DNA MER2_type -94 2624 2065 992 39 31 0 chr12 62894353 62894481 -80891974 - L1PA7 LINE L1 0 6154 6023 266 49 0 24 chr12 62894483 62894524 -80891931 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 39630 39 1 52 chr12 62894524 62900990 -80885465 - L1PA3 LINE L1 -24 6131 7 5877 68 9 1 chr12 62900998 62902146 -80884309 - L1PA7 LINE L1 -119 6035 4883 9412 152 62 13 chr12 62902146 62903898 -80882557 - Tigger2 DNA MER2_type -645 2073 236 269 186 0 0 chr12 62903911 62903970 -80882485 - L1MA8 LINE L1 -244 6047 5989 1600 91 0 0 chr12 62903983 62904182 -80882273 - AluSq SINE Alu -114 199 1 30 45 0 0 chr12 62904648 62904692 -80881763 + AT_rich Low_complexity Low_complexity 1 44 0 1638 193 10 0 chr12 62904971 62905261 -80881194 + AluJo SINE Alu 1 293 -19 224 369 49 38 chr12 62905762 62906179 -80880276 + L2 LINE L2 2376 2858 -456 337 311 10 19 chr12 62906217 62906320 -80880135 - L2 LINE L2 -22 3291 3190 275 314 57 7 chr12 62906939 62907079 -80879376 + MLT1L LTR MaLR 368 514 -101 1955 37 0 0 chr12 62907312 62907555 -80878900 - L1PA5 LINE L1 -41 6113 5871 7057 119 86 68 chr12 62907555 62908262 -80878193 - Tigger1 DNA MER2_type -966 1452 759 16473 36 1 0 chr12 62908262 62911046 -80875409 + L1PA4 LINE L1 3367 6154 -1 7057 119 86 68 chr12 62911046 62911765 -80874690 - Tigger1 DNA MER2_type -1659 759 1 901 229 102 20 chr12 62911786 62912140 -80874315 + Charlie2 DNA MER1_type 1772 2154 -708 587 240 120 13 chr12 62912431 62912664 -80873791 - MER50 LTR ERV1 -236 498 241 243 228 0 35 chr12 62912816 62912873 -80873582 - MER50 LTR ERV1 -658 76 22 289 312 156 0 chr12 62913869 62913978 -80872477 + L2 LINE L2 3147 3272 0 24 32 0 0 chr12 62914049 62914080 -80872375 + AT_rich Low_complexity Low_complexity 1 31 0 282 350 102 18 chr12 62914199 62914425 -80872030 + MIR SINE MIR 18 262 0 1533 195 72 108 chr12 62914502 62915144 -80871311 + LTR1B LTR ERV1 1 619 -207 4719 128 22 14 chr12 62915443 62915640 -80870815 - Tigger1 DNA MER2_type -134 2284 2090 1772 171 7 10 chr12 62915640 62915939 -80870516 - AluJo SINE Alu -14 298 1 4719 128 22 14 chr12 62915939 62916551 -80869904 - Tigger1 DNA MER2_type -328 2090 1468 281 28 0 0 chr12 62916557 62916593 -80869862 - L1PA6 LINE L1 -9 6145 6110 1183 280 47 31 chr12 63016613 63017258 -80769197 + L1MCa LINE L1 1170 2029 -4578 773 259 99 6 chr12 63017325 63017680 -80768775 + L1MCa LINE L1 2042 2429 -3997 1803 132 4 0 chr12 63017782 63018048 -80768407 + AluSx SINE Alu 38 304 -8 23 54 0 0 chr12 63018898 63018935 -80767520 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr12 63019442 63019472 -80766983 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 63019523 63019548 -80766907 + AT_rich Low_complexity Low_complexity 1 25 0 196 350 32 16 chr12 63019849 63019972 -80766483 - MIR SINE MIR -54 208 84 308 268 36 45 chr12 63020159 63020271 -80766184 + MLT1D LTR MaLR 1 111 -394 1076 248 46 7 chr12 63020419 63020721 -80765734 + MER63 DNA MER1_type 744 1057 -4 393 303 38 42 chr12 63021227 63021491 -80764964 + L1 LINE L1 4223 4485 -1661 240 343 70 22 chr12 63021614 63022113 -80764342 - L1MEc LINE L1 -4637 1759 1237 183 299 15 45 chr12 63022423 63022490 -80763965 + L2 LINE L2 3207 3271 -1 357 272 11 22 chr12 63022640 63022732 -80763723 - MLT1D LTR MaLR -131 374 284 433 225 39 0 chr12 63022749 63022878 -80763577 + Charlie1 DNA MER1_type 2419 2552 -209 976 266 71 49 chr12 63023188 63023268 -80763187 + L1MC5 LINE L1 6644 6721 -1087 372 43 0 0 chr12 63023268 63023314 -80763141 + (CA)n Simple_repeat Simple_repeat 1 46 0 976 266 71 49 chr12 63023314 63023834 -80762621 + L1MC5 LINE L1 6721 7175 -633 1995 224 96 103 chr12 63023859 63024483 -80761972 - MLT1E2 LTR MaLR 0 626 5 2304 72 6 31 chr12 63024576 63024894 -80761561 + AluY SINE Alu 1 310 -1 2448 116 19 8 chr12 63027968 63028339 -80758116 + THE1C LTR MaLR 1 375 0 1503 83 9 165 chr12 63028340 63028667 -80757788 + THE1C-int LTR MaLR 2 277 -1303 * 4463 142 1 7 chr12 63028661 63029350 -80757105 + THE1C-int LTR MaLR 896 1580 0 2479 116 14 8 chr12 63029352 63029723 -80756732 + THE1C LTR MaLR 3 375 0 29 60 0 0 chr12 63030415 63030465 -80755990 + AT_rich Low_complexity Low_complexity 1 50 0 185 312 39 39 chr12 63032580 63032657 -80753798 - L2 LINE L2 -451 2863 2787 30 0 0 0 chr12 63033203 63033233 -80753222 + AT_rich Low_complexity Low_complexity 1 30 0 264 287 11 21 chr12 63033759 63033853 -80752602 + (TA)n Simple_repeat Simple_repeat 2 94 0 288 364 67 6 chr12 63034346 63034511 -80751944 + MIR SINE MIR 50 224 -38 23 0 0 0 chr12 63035107 63035130 -80751325 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 63035306 63035329 -80751126 + AT_rich Low_complexity Low_complexity 1 23 0 900 251 56 12 chr12 63036102 63036353 -80750102 - MIR SINE MIR 0 262 1 389 194 86 11 chr12 63036490 63036583 -80749872 - LTR67 LTR ERVL 0 557 458 413 364 12 6 chr12 63036695 63036857 -80749598 + MLT1I LTR MaLR 100 262 -147 288 303 0 9 chr12 63037518 63037627 -80748828 + CT-rich Low_complexity Low_complexity 1 108 0 341 321 122 24 chr12 63038274 63038651 -80747804 + MLT1L LTR MaLR 189 602 -13 22 0 0 0 chr12 63039200 63039222 -80747233 + AT_rich Low_complexity Low_complexity 1 22 0 423 245 47 0 chr12 63040180 63040286 -80746169 + MIR SINE MIR 12 122 -140 240 265 51 43 chr12 63040933 63041050 -80745405 + L2 LINE L2 1291 1408 -1906 231 337 0 31 chr12 63041211 63041309 -80745146 + L2 LINE L2 1614 1708 -1606 359 229 109 6 chr12 63042815 63042990 -80743465 - Charlie4 DNA MER1_type -39 1922 1730 994 240 12 16 chr12 63043225 63043479 -80742976 - Charlie4 DNA MER1_type -1696 265 13 1619 169 20 30 chr12 63044235 63044530 -80741925 - AluSx SINE Alu -20 292 1 21 36 0 0 chr12 63044886 63044914 -80741541 + AT_rich Low_complexity Low_complexity 1 28 0 1338 184 126 29 chr12 63044995 63045447 -80741008 - LTR54B LTR ERV1 -2 496 1 396 0 0 0 chr12 63046929 63046973 -80739482 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2170 104 0 3 chr12 63046975 63047264 -80739191 - AluSx SINE Alu -24 288 1 198 377 0 0 chr12 63047272 63047333 -80739122 + MIR3 SINE MIR 133 193 -15 26 0 0 0 chr12 63047607 63047633 -80738822 + AT_rich Low_complexity Low_complexity 1 26 0 265 131 33 0 chr12 63048290 63048351 -80738104 + (CA)n Simple_repeat Simple_repeat 1 63 0 244 293 138 8 chr12 63049135 63049258 -80737197 + MIR SINE MIR 101 239 -23 1107 309 57 17 chr12 63049316 63049720 -80736735 + LTR16A LTR ERVL 18 437 -13 330 267 113 21 chr12 63049728 63050076 -80736379 - L1MEc LINE L1 -3772 2610 2266 262 340 73 35 chr12 63050422 63050848 -80735607 - L1MEc LINE L1 -4701 1683 1242 295 304 11 22 chr12 63051969 63052061 -80734394 - MLT1D LTR MaLR -131 374 284 433 225 39 0 chr12 63052078 63052207 -80734248 + Charlie1 DNA MER1_type 2419 2552 -209 1824 215 73 29 chr12 63052232 63052536 -80733919 + Charlie1 DNA MER1_type 2089 2378 -383 1556 245 78 27 chr12 63052536 63053013 -80733442 - MLT1D LTR MaLR 0 505 5 1824 215 73 29 chr12 63053013 63053321 -80733134 + Charlie1 DNA MER1_type 2378 2728 -33 482 171 0 0 chr12 63053326 63053414 -80733041 + MLT1D LTR MaLR 416 503 -2 210 291 128 0 chr12 63054090 63054176 -80732279 + MIR SINE MIR 92 188 -74 2354 67 0 10 chr12 63055676 63055975 -80730480 - AluY SINE Alu -15 296 1 1796 265 69 27 chr12 63056151 63056714 -80729741 + MLT1E LTR MaLR 1 587 -6 1709 178 113 7 chr12 63057446 63057889 -80728566 + L1M4 LINE L1 3065 3554 -2592 29 0 0 0 chr12 63057981 63058010 -80728445 + AT_rich Low_complexity Low_complexity 1 29 0 309 146 55 0 chr12 63058247 63058258 -80728197 + MER3 DNA MER1_type 35 48 -161 662 234 9 88 chr12 63058258 63058485 -80727970 - MER3 DNA MER1_type 0 209 1 217 209 0 0 chr12 63059400 63059443 -80727012 + GA-rich Low_complexity Low_complexity 1 43 0 591 239 51 6 chr12 63059537 63059713 -80726742 - L1MC3 LINE L1 -1495 6290 6107 1291 300 81 15 chr12 63060772 63061242 -80725213 + MLT1G LTR MaLR 88 588 -2 374 337 11 16 chr12 63061355 63061545 -80724910 - MIR SINE MIR -1 261 73 264 319 42 67 chr12 63061546 63061665 -80724790 - LTR16A LTR ERVL -174 276 161 273 348 8 0 chr12 63061670 63061788 -80724667 + L1ME3 LINE L1 5915 6033 -129 1620 207 34 17 chr12 63061803 63062160 -80724295 - MLT1A1 LTR MaLR -2 363 1 22 0 0 0 chr12 63062244 63062266 -80724189 + AT_rich Low_complexity Low_complexity 1 22 0 297 252 61 23 chr12 63062302 63062449 -80724006 + L1M4 LINE L1 3780 3931 -2215 210 37 0 0 chr12 63062490 63062517 -80723938 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2283 19 0 0 chr12 63062517 63062784 -80723671 - L1HS LINE L1 0 6155 5889 29 0 0 0 chr12 63064018 63064047 -80722408 + AT_rich Low_complexity Low_complexity 1 29 0 213 176 78 20 chr12 63066462 63066513 -80719942 - MIR SINE MIR -21 241 188 1764 109 0 0 chr12 63067898 63068137 -80718318 - AluY SINE Alu -72 239 1 3114 214 73 25 chr12 63068140 63068243 -80718212 - L1MD2 LINE L1 -104 6649 6552 312 70 0 0 chr12 63068243 63068286 -80718169 + (TG)n Simple_repeat Simple_repeat 2 44 0 3114 214 73 25 chr12 63068286 63068972 -80717483 - L1MD2 LINE L1 -201 6552 5822 1862 254 67 41 chr12 63069094 63069932 -80716523 - L1MD2 LINE L1 -855 5685 4826 871 174 26 7 chr12 63070001 63070156 -80716299 + MER49 LTR ERV1 5 162 -761 807 181 162 32 chr12 63070899 63071115 -80715340 + AluJb SINE Alu 3 246 -66 4195 159 10 19 chr12 63073578 63074302 -80712153 + MER49 LTR ERV1 207 923 0 1272 239 72 21 chr12 63074305 63074777 -80711678 - L1MD2 LINE L1 -1728 4812 4317 1723 203 64 66 chr12 63074777 63075245 -80711210 - MLT1D LTR MaLR -14 491 25 2983 252 83 66 chr12 63075292 63077198 -80709257 - L1MD2 LINE L1 -2249 4291 2420 3460 211 78 6 chr12 63077198 63078004 -80708451 - MER6 DNA MER2_type -1 864 1 2983 252 83 66 chr12 63078004 63078162 -80708293 - L1MD2 LINE L1 -4120 2420 2266 2015 130 0 35 chr12 63078162 63078477 -80707978 + AluSx SINE Alu 1 304 -8 2983 252 83 66 chr12 63078477 63078624 -80707831 - L1MD2 LINE L1 -4274 2266 2034 460 175 48 10 chr12 63078608 63078711 -80707744 - L1MD2 LINE L1 -5335 1208 1102 * 691 225 199 20 chr12 63078740 63079091 -80707364 + MER41B LTR ERV1 103 363 -115 249 167 24 95 chr12 63079184 63079268 -80707187 + MER66A LTR ERV1 285 362 -116 373 304 32 55 chr12 63079404 63079716 -80706739 - HAL1 LINE L1 -1148 1359 1055 22 0 0 0 chr12 63080747 63080769 -80705686 + AT_rich Low_complexity Low_complexity 1 22 0 234 236 18 0 chr12 63081028 63081083 -80705372 + (TA)n Simple_repeat Simple_repeat 1 56 0 214 273 0 18 chr12 63081611 63081666 -80704789 + (TATG)n Simple_repeat Simple_repeat 3 56 0 411 111 0 111 chr12 63082155 63082245 -80704210 + MADE1 DNA Mariner 1 80 0 204 217 0 0 chr12 63082916 63082962 -80703493 + (TA)n Simple_repeat Simple_repeat 1 46 0 194 436 0 8 chr12 63083129 63083246 -80703209 - L2 LINE L2 -258 3014 2899 219 308 162 26 chr12 63083265 63083382 -80703073 + L2 LINE L2 3178 3310 -3 22 88 0 0 chr12 63083834 63083891 -80702564 + AT_rich Low_complexity Low_complexity 1 57 0 192 319 0 44 chr12 63084415 63084506 -80701949 + MIR SINE MIR 77 163 -99 276 291 73 56 chr12 63084591 63085058 -80701397 - L1MC5 LINE L1 -35 7926 7452 362 314 66 19 chr12 63086267 63086538 -80699917 + L1MC4a LINE L1 5260 5543 -2265 441 256 77 13 chr12 63086541 63086697 -80699758 + L1MC4a LINE L1 5717 5882 -1926 1668 151 59 51 chr12 63087066 63087221 -80699234 + THE1C LTR MaLR 1 153 -222 2181 93 0 0 chr12 63087221 63087523 -80698932 - AluSc SINE Alu 0 302 1 1668 151 59 51 chr12 63087523 63087738 -80698717 + THE1C LTR MaLR 153 375 0 215 31 31 0 chr12 63087765 63087797 -80698658 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1051 237 101 35 chr12 63088775 63089150 -80697305 + LTR52 LTR ERVL 3 402 -19 2156 240 40 17 chr12 63089161 63089785 -80696670 + LTR52-int LTR ERVL 1 664 -2892 3634 272 48 43 chr12 63089806 63091181 -80695274 + LTR52-int LTR ERVL 796 2177 -1379 3565 254 40 67 chr12 63091201 63092449 -80694006 + LTR52-int LTR ERVL 2091 3535 -21 699 242 22 23 chr12 63092465 63092839 -80693616 + LTR52 LTR ERVL 1 408 -13 2142 123 0 7 chr12 63094497 63094806 -80691649 - AluSq SINE Alu -6 307 1 4704 164 72 10 chr12 63094893 63095816 -80690639 - L1MA4 LINE L1 -1 6299 5320 5433 163 6 20 chr12 63095820 63097259 -80689196 - L1PB3 LINE L1 0 6154 4730 478 129 43 52 chr12 63097282 63097398 -80689057 + L1 LINE L1 2203 2317 -3829 * 2018 206 25 14 chr12 63097394 63097909 -80688546 + L1 LINE L1 3046 3566 -2580 1280 253 30 46 chr12 63097913 63098221 -80688234 - L1M4 LINE L1 -3499 4066 3776 2437 74 0 0 chr12 63098221 63098531 -80687924 + AluY SINE Alu 1 310 -1 1280 253 30 46 chr12 63098531 63098752 -80687703 - L1M4 LINE L1 -3789 3776 3553 1642 279 73 27 chr12 63098855 63098987 -80687468 - L1M4 LINE L1 -3966 3599 3474 378 0 0 0 chr12 63098987 63099029 -80687426 + (TG)n Simple_repeat Simple_repeat 1 42 0 1642 279 73 27 chr12 63099029 63099878 -80686577 - L1M4 LINE L1 -4091 3474 2589 1938 261 21 22 chr12 63100028 63100828 -80685627 - L1M3c LINE L1 -4579 2140 1338 280 339 23 15 chr12 63101622 63101752 -80684703 - L1M3c LINE L1 -6009 710 580 2380 55 0 58 chr12 63102346 63102674 -80683781 + AluY SINE Alu 1 309 -2 22 0 0 0 chr12 63103565 63103587 -80682868 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr12 63104003 63104041 -80682414 + AT_rich Low_complexity Low_complexity 1 38 0 222 272 18 9 chr12 63104110 63104224 -80682231 + GA-rich Low_complexity Low_complexity 3 117 0 309 151 0 0 chr12 63104379 63104432 -80682023 + (TG)n Simple_repeat Simple_repeat 2 54 0 2486 103 11 19 chr12 63104922 63105299 -80681156 + THE1C LTR MaLR 1 374 -1 336 328 23 8 chr12 63105432 63105563 -80680892 + MIR SINE MIR 116 248 -14 1416 302 73 16 chr12 63105849 63106968 -80679487 - L1MEc LINE L1 -3581 2983 1831 1036 223 83 21 chr12 63107073 63107409 -80679046 - L1MEc LINE L1 -4926 1119 763 * 6450 210 34 43 chr12 63107408 63108919 -80677536 + L1MC3 LINE L1 6133 7628 -157 1973 134 16 40 chr12 63108919 63109368 -80677087 - LTR21B LTR ERV1 0 438 1 6450 210 34 43 chr12 63109368 63109525 -80676930 + L1MC3 LINE L1 7628 7785 0 646 243 61 57 chr12 63109520 63109800 -80676655 - L1MDa LINE L1 -4691 1849 1569 * 2172 225 28 23 chr12 63109832 63110437 -80676018 - L1 LINE L1 -1316 4830 4223 1071 238 32 42 chr12 63110638 63111017 -80675438 - L1 LINE L1 -1549 4597 4223 1535 232 61 7 chr12 63111521 63111931 -80674524 - MER63B DNA MER1_type -4 432 1 272 364 37 8 chr12 63112286 63112422 -80674033 - MIR SINE MIR -64 144 17 2321 103 3 0 chr12 63112788 63113090 -80673365 - AluSx SINE Alu -7 305 3 234 105 0 0 chr12 63113126 63113164 -80673291 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 26 0 0 chr12 63113934 63113972 -80672483 + AT_rich Low_complexity Low_complexity 1 38 0 395 271 71 13 chr12 63114613 63114768 -80671687 - L1ME2 LINE L1 -11 6153 5990 6356 30 5 18 chr12 63115353 63116154 -80670301 + L1P LINE L1 4296 5086 -1060 30 97 0 0 chr12 63116221 63116314 -80670141 + AT_rich Low_complexity Low_complexity 1 93 0 1985 133 43 42 chr12 63117072 63117616 -80668839 - MER51A LTR ERV1 -1 633 1 870 257 28 9 chr12 63117639 63117853 -80668602 + MER58A DNA MER1_type 1 218 -6 324 265 91 15 chr12 63118212 63118344 -80668111 - MER90 LTR ERV1 -13 562 421 187 219 41 27 chr12 63118987 63119060 -80667395 + L2 LINE L2 3115 3188 -125 1796 234 77 56 chr12 63119060 63119645 -80666810 + MLT1E2 LTR MaLR 1 598 -27 430 295 66 24 chr12 63120264 63120430 -80666025 - MIR SINE MIR -89 173 1 24 0 0 0 chr12 63120463 63120487 -80665968 + AT_rich Low_complexity Low_complexity 1 24 0 200 175 35 0 chr12 63120724 63120781 -80665674 + CT-rich Low_complexity Low_complexity 2 60 0 224 231 23 138 chr12 63121264 63121394 -80665061 - L2 LINE L2 0 3313 3199 210 103 51 0 chr12 63121523 63121562 -80664893 - L2 LINE L2 -1392 1922 1882 24 77 0 0 chr12 63122218 63122270 -80664185 + AT_rich Low_complexity Low_complexity 1 52 0 209 161 0 0 chr12 63122826 63122857 -80663598 + (ATG)n Simple_repeat Simple_repeat 3 33 0 932 177 0 0 chr12 63122858 63123036 -80663419 + FRAM SINE Alu 1 177 0 203 0 0 36 chr12 63123359 63123387 -80663068 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 295 312 48 68 chr12 63125289 63125539 -80660916 + L2 LINE L2 2998 3242 -71 581 296 24 6 chr12 63126808 63126977 -80659478 + MIR SINE MIR 20 191 -71 204 196 18 18 chr12 63128246 63128302 -80658153 + (TTA)n Simple_repeat Simple_repeat 2 57 0 517 269 160 81 chr12 63129424 63129885 -80656570 + MLT1F LTR MaLR 57 540 -2 192 200 0 0 chr12 63129959 63129999 -80656456 + GA-rich Low_complexity Low_complexity 3 42 0 252 347 84 28 chr12 63130099 63130312 -80656143 - MIR SINE MIR -7 255 31 24 32 0 0 chr12 63131305 63131336 -80655119 + AT_rich Low_complexity Low_complexity 1 31 0 285 51 0 0 chr12 63131496 63131535 -80654920 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 2171 108 14 0 chr12 63131535 63131831 -80654624 - AluSg SINE Alu -10 300 1 423 301 48 0 chr12 63131848 63131994 -80654461 + L2 LINE L2 1979 2131 -1183 1817 199 36 40 chr12 63132465 63132895 -80653560 - MSTB1 LTR MaLR -3 419 1 368 300 59 68 chr12 63132952 63133189 -80653266 + L1M4c LINE L1 1251 1485 -4899 307 130 0 0 chr12 63133225 63133271 -80653184 + L1P LINE L1 4026 4071 -2075 2932 135 0 5 chr12 63133272 63133709 -80652746 - THE1-int LTR MaLR -297 1283 849 367 191 36 73 chr12 63133912 63134022 -80652433 - MLT1E2 LTR MaLR -520 106 1 281 374 74 5 chr12 63134141 63134331 -80652124 + MIR SINE MIR 6 208 -54 25 0 0 0 chr12 63134632 63134657 -80651798 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 63134708 63134738 -80651717 + AT_rich Low_complexity Low_complexity 1 30 0 459 0 0 0 chr12 63137365 63137416 -80649039 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 281 280 96 25 chr12 63137903 63138060 -80648395 - L1MC5 LINE L1 -37 7924 7757 26 30 0 0 chr12 63138125 63138158 -80648297 + AT_rich Low_complexity Low_complexity 1 33 0 5872 87 6 19 chr12 63138395 63139199 -80647256 + L1PA7 LINE L1 3648 4442 -1704 6368 78 15 6 chr12 63139199 63140527 -80645928 + L1PA7 LINE L1 4810 6154 0 5872 87 6 19 chr12 63140527 63140571 -80645884 + L1PA7 LINE L1 4442 4485 -1661 467 263 47 29 chr12 63141050 63141221 -80645234 - MER5B DNA MER1_type 0 178 5 291 344 42 0 chr12 63142367 63142463 -80643992 - MER5A DNA MER1_type -83 106 7 3378 186 36 3 chr12 63144945 63145304 -80641151 - MER73 LTR ERVL 0 644 255 327 25 0 0 chr12 63145304 63145344 -80641111 + (TC)n Simple_repeat Simple_repeat 1 40 0 3378 186 36 3 chr12 63145344 63145602 -80640853 - MER73 LTR ERVL -389 255 7 35 54 0 0 chr12 63146187 63146243 -80640212 + AT_rich Low_complexity Low_complexity 1 56 0 1598 86 10 0 chr12 63146726 63146935 -80639520 + AluSq SINE Alu 86 296 -17 876 318 70 34 chr12 63148105 63148522 -80637933 + L1MC4 LINE L1 15 389 -5656 * 993 264 8 0 chr12 63148508 63148758 -80637697 + L1MC4 LINE L1 652 903 -5142 * 4037 201 155 29 chr12 63148754 63149911 -80636544 + L1MC3 LINE L1 6482 7783 -2 831 227 48 24 chr12 63150099 63150350 -80636105 - MER58B DNA MER1_type -6 335 79 344 316 118 22 chr12 63150857 63151492 -80634963 + L1MC4 LINE L1 4816 5511 -1053 916 265 46 94 chr12 63151642 63152278 -80634177 + L1MC4 LINE L1 5675 6340 -1886 2103 178 8 18 chr12 63152278 63152672 -80633783 + MLT1B LTR MaLR 1 390 0 916 265 46 94 chr12 63152672 63153640 -80632815 + L1MC4 LINE L1 6340 7035 -1191 285 286 34 34 chr12 63153641 63153760 -80632695 - L1MD3 LINE L1 -792 7203 7085 * 1597 216 75 5 chr12 63153754 63154153 -80632302 + L1MD3 LINE L1 7561 7987 -8 2254 142 15 10 chr12 63154352 63154754 -80631701 - L1MA9 LINE L1 -1 6311 5908 3740 130 84 14 chr12 63154754 63155448 -80631007 - Tigger3(Golem) DNA MER2_type -11 3018 2277 664 194 0 0 chr12 63155439 63155547 -80630908 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1380 129 50 50 chr12 63155547 63155827 -80630628 - L1MA9 LINE L1 -406 5906 5627 338 304 19 62 chr12 63155822 63155983 -80630472 + L1M3a LINE L1 625 778 -5177 * 217 267 10 119 chr12 63156322 63156423 -80630032 + L3 LINE CR1 1485 1574 -3 1501 133 106 20 chr12 63157489 63157782 -80628673 + THE1C LTR MaLR 1 318 -57 1452 104 0 0 chr12 63157824 63158016 -80628439 - AluSg/x SINE Alu -11 299 108 679 146 0 0 chr12 63158017 63158120 -80628335 + AluSg SINE Alu 13 115 -195 264 224 17 0 chr12 63158120 63158178 -80628277 + THE1C LTR MaLR 306 364 0 302 251 63 46 chr12 63158796 63158971 -80627484 - L1ME LINE L1 -366 5755 5578 269 335 32 50 chr12 63159204 63159422 -80627033 - MIR SINE MIR 0 262 49 1661 16 0 0 chr12 63159521 63159709 -80626746 - AluYa5 SINE Alu -2 309 122 1393 204 72 23 chr12 63159969 63160317 -80626138 - MLT1A1 LTR MaLR 0 365 1 2166 156 28 17 chr12 63162343 63162703 -80623752 - THE1B LTR MaLR 0 364 1 10714 118 8 4 chr12 63162703 63164277 -80622178 - THE1B-int LTR MaLR 0 1580 1 2173 135 39 14 chr12 63164277 63164632 -80621823 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr12 63164837 63164866 -80621589 + AT_rich Low_complexity Low_complexity 1 29 0 1929 233 50 43 chr12 63165435 63166246 -80620209 + L1MC3 LINE L1 5095 5403 -743 277 326 76 42 chr12 63168597 63168951 -80617504 + L2 LINE L2 2695 3059 -213 286 312 0 0 chr12 63169005 63169082 -80617373 - L2 LINE L2 -1010 2304 2228 219 154 15 62 chr12 63169434 63169499 -80616956 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 5114 154 4 0 chr12 63169789 63170605 -80615850 - L1PA15 LINE L1 0 6165 5347 21 36 0 0 chr12 63171228 63171256 -80615199 + AT_rich Low_complexity Low_complexity 1 28 0 633 273 50 64 chr12 63171549 63171926 -80614529 - MER113 DNA MER1_type? 0 521 150 2130 140 119 10 chr12 63172873 63173259 -80613196 - MSTA LTR MaLR 0 428 1 1362 198 112 22 chr12 63173361 63173674 -80612781 + L1MA5 LINE L1 460 800 -6689 866 262 97 39 chr12 63173669 63174131 -80612324 + L1MA5 LINE L1 2964 3452 -4113 * 5123 181 41 18 chr12 63174123 63176066 -80610389 + L1MA5 LINE L1 5736 7717 -2 390 316 127 30 chr12 63176096 63176593 -80609862 + L1M3e LINE L1 3697 4241 -3324 348 241 121 17 chr12 63178102 63178218 -80608237 - MER103 DNA DNA -11 155 28 646 169 38 8 chr12 63178244 63178485 -80607970 + CT-rich Low_complexity Low_complexity 1 248 0 369 117 0 0 chr12 63178496 63178556 -80607899 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 231 103 0 0 chr12 63178570 63178609 -80607846 + (TG)n Simple_repeat Simple_repeat 2 40 0 2051 123 0 3 chr12 63178659 63178960 -80607495 - AluSx SINE Alu -12 300 1 325 332 95 13 chr12 63180191 63180423 -80606032 - L1M4 LINE L1 -1545 4601 4351 188 229 0 42 chr12 63180455 63180503 -80605952 + MER5B DNA MER1_type 7 52 -126 1540 108 0 0 chr12 63230694 63230898 -80555557 - AluSc SINE Alu -105 204 1 29 47 0 0 chr12 63230933 63230976 -80555479 + AT_rich Low_complexity Low_complexity 1 43 0 2608 45 0 0 chr12 63231355 63231666 -80554789 + AluY SINE Alu 1 311 0 12619 135 18 19 chr12 63231876 63235404 -80551051 + L1PA7 LINE L1 2608 6022 -132 28 48 0 0 chr12 63235573 63235615 -80550840 + AT_rich Low_complexity Low_complexity 1 42 0 371 309 55 60 chr12 63237465 63237543 -80548912 + MIR SINE MIR 62 139 -123 3340 166 34 2 chr12 63237543 63238127 -80548328 - LTR26 LTR ERV1 0 603 1 371 309 55 60 chr12 63238127 63238249 -80548206 + MIR SINE MIR 139 261 -1 29 0 0 0 chr12 63238709 63238738 -80547717 + AT_rich Low_complexity Low_complexity 1 29 0 181 400 0 0 chr12 63238867 63238937 -80547518 - MIR3 SINE MIR -23 185 116 1039 158 0 0 chr12 63239116 63239313 -80547142 - AluSg/x SINE Alu 0 328 132 26 30 0 0 chr12 63240286 63240319 -80546136 + AT_rich Low_complexity Low_complexity 1 33 0 22 103 0 0 chr12 63240331 63240409 -80546046 + AT_rich Low_complexity Low_complexity 1 78 0 2931 188 25 68 chr12 63241516 63242238 -80544217 - LTR8 LTR ERV1 0 691 1 704 341 56 19 chr12 63242441 63242851 -80543604 + L1MEd LINE L1 269 693 -5426 23 0 0 0 chr12 63242970 63242993 -80543462 + AT_rich Low_complexity Low_complexity 1 23 0 7031 198 46 21 chr12 63243103 63244704 -80541751 + L1MCa LINE L1 23 1662 -4764 5902 183 49 15 chr12 63244705 63246428 -80540027 + L1MA4A LINE L1 4011 5821 -482 6639 174 24 13 chr12 63246428 63247712 -80538743 - HSMAR2 DNA Mariner -1 1301 4 5902 183 49 15 chr12 63247712 63248205 -80538250 + L1MA4A LINE L1 5821 6296 -7 5196 252 28 22 chr12 63248204 63250169 -80536286 + L1M4 LINE L1 2927 4903 -1243 * 2537 290 68 34 chr12 63250170 63251241 -80535214 + L1PA12 LINE L1 6 1113 -6468 1093 44 7 0 chr12 63251371 63251508 -80534947 + L1PA7 LINE L1 6015 6152 -2 4149 132 6 0 chr12 63251536 63252172 -80534283 - L1PA14 LINE L1 -58 6103 5464 301 313 46 0 chr12 63252180 63252311 -80534144 - L1MEc LINE L1 -2573 3642 3506 652 266 83 25 chr12 63252836 63253114 -80533341 - LTR19C LTR ERV1 0 779 486 * 1444 216 5 76 chr12 63253105 63253512 -80532943 - LTR9 LTR ERV1 -234 378 1 389 135 122 14 chr12 63253539 63253613 -80532842 + MER51D LTR ERV1 500 581 -76 364 279 88 37 chr12 63253748 63254099 -80532356 - L1MEc LINE L1 -2899 3316 2948 1031 228 85 51 chr12 63254151 63254780 -80531675 - L1MEc LINE L1 -3506 2709 2099 23 54 0 0 chr12 63256540 63256577 -80529878 + AT_rich Low_complexity Low_complexity 1 37 0 288 242 121 15 chr12 63256883 63257015 -80529440 + L1ME3A LINE L1 3805 3950 -2196 889 192 81 0 chr12 63257079 63257251 -80529204 - MER6B DNA MER2_type -20 190 5 315 0 0 0 chr12 63257260 63257295 -80529160 + (CA)n Simple_repeat Simple_repeat 2 36 0 2003 147 9 29 chr12 63257325 63257671 -80528784 + Tigger2a DNA MER2_type 1 339 -95 1002 99 0 0 chr12 63257672 63257813 -80528642 + AluSp/q SINE Alu 168 308 -5 412 232 21 11 chr12 63257813 63257908 -80528547 + Tigger2a DNA MER2_type 349 444 0 1224 262 71 36 chr12 63258087 63258717 -80527738 + L1ME3A LINE L1 4222 4873 -1273 869 294 78 70 chr12 63259106 63259512 -80526943 + L1ME3A LINE L1 5312 5713 -457 2033 137 0 13 chr12 63259512 63259645 -80526810 + AluSx SINE Alu 3 136 -176 2398 70 3 0 chr12 63259645 63259947 -80526508 + AluY SINE Alu 1 303 -8 2033 137 0 13 chr12 63259947 63260113 -80526342 + AluSx SINE Alu 136 298 -14 869 294 78 70 chr12 63260113 63260543 -80525912 + L1ME3A LINE L1 5713 6162 -8 2112 104 3 17 chr12 63260862 63261161 -80525294 - AluSx SINE Alu -17 295 1 330 380 43 25 chr12 63261610 63261773 -80524682 - L2 LINE L2 -1 3271 3106 409 344 50 27 chr12 63261872 63262093 -80524362 - MIR SINE MIR -9 253 28 217 233 0 0 chr12 63262651 63262694 -80523761 + L2 LINE L2 3261 3303 -10 1525 242 62 70 chr12 63264069 63264760 -80521695 - L1ME1 LINE L1 -150 6016 5331 206 191 24 0 chr12 63264763 63264805 -80521650 + (TA)n Simple_repeat Simple_repeat 1 43 0 249 210 0 0 chr12 63264827 63264889 -80521566 + (TA)n Simple_repeat Simple_repeat 1 62 0 785 237 52 73 chr12 63264913 63265200 -80521255 + L1MDa LINE L1 261 541 -5999 1967 285 93 38 chr12 63265206 63265323 -80521132 + L1MDa LINE L1 663 772 -5768 2373 66 3 3 chr12 63265323 63265626 -80520829 + AluY SINE Alu 1 303 -8 1967 285 93 38 chr12 63265626 63266454 -80520001 + L1MDa LINE L1 772 1660 -4880 470 247 0 11 chr12 63268093 63268186 -80518269 + AluJ/FLAM SINE Alu 3 94 -218 504 61 15 0 chr12 63268186 63268252 -80518203 + L1PB1 LINE L1 6016 6082 -69 224 338 66 22 chr12 63268622 63268758 -80517697 + MIR SINE MIR 64 205 -57 292 74 74 0 chr12 63270835 63270889 -80515566 - L1PA15 LINE L1 -9 6156 6099 190 286 311 6 chr12 63271100 63271261 -80515194 + MIR SINE MIR 53 262 0 2279 63 0 11 chr12 63271405 63271723 -80514732 - AluY SINE Alu 0 315 1 195 42 0 0 chr12 63272395 63272419 -80514036 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 436 98 0 0 chr12 63272453 63272514 -80513941 - AluSc SINE Alu -55 254 194 25 31 0 0 chr12 63272844 63272876 -80513579 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr12 63273750 63273793 -80512662 + AT_rich Low_complexity Low_complexity 1 43 0 5882 198 16 8 chr12 63273793 63275195 -80511260 - L1P5 LINE L1 -701 5450 4046 807 281 61 18 chr12 63275220 63275498 -80510957 - MLT1H LTR MaLR -259 290 1 5921 158 62 18 chr12 63277139 63278112 -80508343 - Tigger3b DNA MER2_type -1798 1230 196 2478 165 40 4 chr12 63278112 63278592 -80507863 - L1MA4A LINE L1 -6 6297 5801 5921 158 62 18 chr12 63278592 63278785 -80507670 - Tigger3b DNA MER2_type -2832 196 13 234 224 69 0 chr12 63279138 63279196 -80507259 - L1MD3 LINE L1 -1327 6668 6607 240 111 0 0 chr12 63279196 63279232 -80507223 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 241 305 191 35 chr12 63279612 63279753 -80506702 - MIR SINE MIR -26 236 74 1611 57 9 19 chr12 63279906 63280117 -80506338 - AluY SINE Alu -18 293 85 2729 160 109 34 chr12 63280310 63281143 -80505312 + pTR5 LTR ERV1 5 277 -437 280 290 10 0 chr12 63281143 63281243 -80505212 + LTR30 LTR ERV1 544 644 -78 1406 100 50 5 chr12 63281247 63281467 -80504988 + LTR12 LTR ERV1 485 714 0 219 159 0 23 chr12 63282033 63282077 -80504378 + (ATTTG)n Simple_repeat Simple_repeat 2 44 0 1959 106 10 23 chr12 63282488 63282790 -80503665 - AluSc SINE Alu -11 298 1 412 340 64 5 chr12 63284091 63284294 -80502161 - MIR SINE MIR -27 235 21 1900 141 3 10 chr12 63286841 63287140 -80499315 - AluSx SINE Alu -13 299 3 42 57 0 0 chr12 63287330 63287400 -80499055 + AT_rich Low_complexity Low_complexity 1 70 0 1861 165 93 20 chr12 63288934 63289333 -80497122 - MSTA LTR MaLR 0 428 1 504 300 117 67 chr12 63289488 63289851 -80496604 + MLT1J2 LTR MaLR 1 386 -64 1996 133 0 10 chr12 63290518 63290834 -80495621 - AluSx SINE Alu 0 312 1 7601 197 76 21 chr12 63292241 63293904 -80492551 - MER52A LTR ERV1 0 1755 1 900 232 275 17 chr12 63294169 63294518 -80491937 - MLT1E2 LTR MaLR -187 439 1 1979 116 40 26 chr12 63294952 63295254 -80491201 + AluSx SINE Alu 3 308 -4 2665 122 70 14 chr12 63295617 63296101 -80490354 - MER9 LTR ERVK 0 511 1 1141 192 74 26 chr12 63296315 63296627 -80489828 + L1MB8 LINE L1 4872 5198 -948 738 218 19 6 chr12 63296628 63296784 -80489671 + FRAM SINE Alu 3 160 -16 296 200 29 0 chr12 63296789 63296859 -80489596 + L1MB8 LINE L1 5232 5303 -843 3373 209 52 23 chr12 63296863 63297759 -80488696 + L1MB8 LINE L1 5257 6178 0 2110 251 145 33 chr12 63298457 63298817 -80487638 - L1MCc LINE L1 -1259 5682 5364 1091 178 45 0 chr12 63298817 63299059 -80487396 - L1MA4 LINE L1 -14 6286 6034 2110 251 145 33 chr12 63299059 63299971 -80486484 - L1MCc LINE L1 -1577 5364 4319 1285 198 108 47 chr12 63300177 63300520 -80485935 + THE1B LTR MaLR 1 364 0 8827 147 18 37 chr12 63300523 63302131 -80484324 + THE1C-int LTR MaLR 4 1580 0 1671 158 57 41 chr12 63302133 63302500 -80483955 + THE1C LTR MaLR 3 375 0 472 231 28 0 chr12 63302522 63302704 -80483751 - L1MCc LINE L1 -2849 4092 3906 752 201 16 33 chr12 63302816 63303000 -80483455 - L1PA15 LINE L1 -9 6156 5976 749 228 95 8 chr12 63302997 63303238 -80483217 - L1MCc LINE L1 -3236 3705 3444 * 416 252 78 78 chr12 63303263 63303657 -80482798 - L1MCc LINE L1 -3705 3236 2893 1231 283 85 38 chr12 63303791 63304960 -80481495 - L1MCc LINE L1 -4830 2111 882 577 308 68 15 chr12 63305305 63305643 -80480812 - L1MCc LINE L1 -6046 377 22 196 319 44 62 chr12 63305648 63305808 -80480647 - L2 LINE L2 -564 2750 2594 17409 214 56 48 chr12 63305808 63309560 -80476895 + MER50-int LTR ERV1 670 4561 -2644 2950 85 42 0 chr12 63309560 63309984 -80476471 - L1PA13 LINE L1 -5 6158 5717 17409 214 56 48 chr12 63309984 63311643 -80474812 + MER50-int LTR ERV1 4561 6205 -1000 2113 160 13 21 chr12 63311625 63312001 -80474454 + MER50-int LTR ERV1 6825 7197 -8 * 3921 170 18 13 chr12 63312001 63312708 -80473747 + MER50 LTR ERV1 1 711 -23 207 0 0 0 chr12 63312920 63312943 -80473512 + (TG)n Simple_repeat Simple_repeat 1 23 0 201 419 38 9 chr12 63313992 63314097 -80472358 - L2 LINE L2 -19 3294 3187 285 29 0 0 chr12 63314489 63314523 -80471932 + (TA)n Simple_repeat Simple_repeat 1 34 0 191 361 84 0 chr12 63315135 63315218 -80471237 - MIR SINE MIR -76 186 97 21 36 0 0 chr12 63316232 63316260 -80470195 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr12 63316656 63316692 -80469763 + AT_rich Low_complexity Low_complexity 1 36 0 197 366 76 0 chr12 63318979 63319110 -80467345 + L2 LINE L2 3161 3301 -12 1256 235 32 20 chr12 63319143 63319528 -80466927 + MER31B LTR ERV1 1 543 0 1306 206 43 21 chr12 63319765 63320047 -80466408 + AluJo SINE Alu 3 290 -22 240 295 89 27 chr12 63320047 63320159 -80466296 - MIR3 SINE MIR -49 159 41 22 0 0 0 chr12 63321939 63321961 -80464494 + AT_rich Low_complexity Low_complexity 1 22 0 252 122 0 0 chr12 63322068 63322109 -80464346 + (T)n Simple_repeat Simple_repeat 1 41 0 239 286 14 0 chr12 63322372 63322442 -80464013 - MER67D LTR ERV1 -83 431 361 1404 172 13 77 chr12 63322470 63322870 -80463585 - MER67C LTR ERV1 -245 269 5 272 350 28 55 chr12 63322899 63323142 -80463313 - MLT1J LTR MaLR -173 338 101 207 0 0 0 chr12 63323142 63323165 -80463290 + (TA)n Simple_repeat Simple_repeat 1 23 0 4028 143 14 5 chr12 63324480 63325125 -80461330 + MER39B LTR ERV1 3 653 0 274 326 31 0 chr12 63325238 63325336 -80461119 + L2 LINE L2 3171 3271 -1 693 210 0 38 chr12 63325780 63325929 -80460526 - MLT1C LTR MaLR 0 467 325 399 166 14 3 chr12 63325929 63326078 -80460377 - MER4C LTR ERV1 0 465 277 1518 115 129 134 chr12 63326096 63326521 -80459934 - MER4A LTR ERV1 -241 423 1 1207 183 111 49 chr12 63326524 63326830 -80459625 - MLT1C LTR MaLR -142 325 1 25 31 0 0 chr12 63326836 63326868 -80459587 + AT_rich Low_complexity Low_complexity 1 32 0 198 118 0 0 chr12 63327338 63327372 -80459083 + (TG)n Simple_repeat Simple_repeat 1 34 0 2044 113 0 0 chr12 63327498 63327780 -80458675 + AluSc SINE Alu 11 292 -17 30 59 0 0 chr12 63327796 63327847 -80458608 + AT_rich Low_complexity Low_complexity 1 51 0 855 360 48 44 chr12 63327984 63328708 -80457747 + L2 LINE L2 1990 2716 -598 277 271 125 30 chr12 63329340 63329805 -80456650 + L1ME LINE L1 722 1267 -4994 22 35 0 0 chr12 63329930 63329959 -80456496 + AT_rich Low_complexity Low_complexity 1 29 0 258 331 34 14 chr12 63329994 63330142 -80456313 + L2 LINE L2 3163 3313 0 22 35 0 0 chr12 63331129 63331158 -80455297 + AT_rich Low_complexity Low_complexity 1 29 0 859 240 22 23 chr12 63332536 63332893 -80453562 + MLT1C LTR MaLR 59 449 -18 328 200 0 29 chr12 63333175 63333245 -80453210 + MER39 LTR ERV1 1 68 -639 25 31 0 0 chr12 63333245 63333277 -80453178 + AT_rich Low_complexity Low_complexity 1 32 0 260 220 51 0 chr12 63333279 63333338 -80453117 + LTR48 LTR ERV1 62 123 -664 227 318 54 34 chr12 63333403 63333551 -80452904 + MIR SINE MIR 95 245 -17 525 289 94 16 chr12 63334102 63334510 -80451945 + LTR33 LTR ERVL 7 521 0 2026 109 6 26 chr12 63334533 63334845 -80451610 - AluSq SINE Alu -3 310 5 651 235 20 35 chr12 63335785 63335985 -80450470 + L1MC5 LINE L1 7731 7927 -34 262 284 37 0 chr12 63335984 63336145 -80450310 - L1MC/D LINE L1 -340 5781 5687 * 22 0 0 0 chr12 63336226 63336248 -80450207 + AT_rich Low_complexity Low_complexity 1 22 0 458 291 63 37 chr12 63337499 63337688 -80448767 + MIR SINE MIR 18 211 -51 221 327 29 19 chr12 63338197 63338301 -80448154 + L2 LINE L2 2267 2371 -943 1730 176 7 0 chr12 63338629 63338913 -80447542 + AluJo SINE Alu 4 289 -23 304 162 36 36 chr12 63338923 63339034 -80447421 + (TATATG)n Simple_repeat Simple_repeat 6 116 0 27 73 0 0 chr12 63339162 63339217 -80447238 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr12 63339800 63339835 -80446620 + AT_rich Low_complexity Low_complexity 1 35 0 193 302 38 0 chr12 63340508 63340561 -80445894 - L2 LINE L2 -8 3264 3210 1371 125 25 8 chr12 63340591 63340831 -80445624 + L1PA13 LINE L1 5919 6162 -1 22 0 0 0 chr12 63342053 63342075 -80444380 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 63342694 63342725 -80443730 + AT_rich Low_complexity Low_complexity 1 31 0 5257 206 41 9 chr12 63343251 63345116 -80441339 + L1MC1 LINE L1 4400 6319 -14 301 226 60 24 chr12 63345837 63345921 -80440534 + L1MC4 LINE L1 6605 6691 -1351 4916 165 54 9 chr12 63345991 63346482 -80439973 - L1MA9 LINE L1 -18 6294 5826 186 43 0 0 chr12 63346482 63346505 -80439950 + (TG)n Simple_repeat Simple_repeat 2 24 0 4916 165 54 9 chr12 63346505 63347001 -80439454 - L1MA9 LINE L1 -486 5826 5263 2032 272 86 7 chr12 63347140 63347950 -80438505 + L1ME3A LINE L1 5292 6165 -5 1068 245 79 97 chr12 63348643 63349190 -80437265 - MLT1F LTR MaLR 0 542 6 21 36 0 0 chr12 63349202 63349230 -80437225 + AT_rich Low_complexity Low_complexity 1 28 0 694 97 0 44 chr12 63351209 63351323 -80435132 - HY1 scRNA scRNA -2 110 2 609 212 33 7 chr12 63352646 63352797 -80433658 - L1MDa LINE L1 -2090 4450 4296 3367 265 47 21 chr12 63352832 63354424 -80432031 - L1MDa LINE L1 -2486 4054 2416 23 0 0 0 chr12 63354854 63354877 -80431578 + AT_rich Low_complexity Low_complexity 1 23 0 544 276 0 0 chr12 63354895 63355018 -80431437 - FRAM SINE Alu -52 124 2 250 183 0 98 chr12 63358106 63358188 -80428267 + MLT1J2 LTR MaLR 360 433 -17 203 136 45 0 chr12 63358931 63358975 -80427480 + CT-rich Low_complexity Low_complexity 3 48 0 1697 159 11 4 chr12 63360052 63360329 -80426126 + AluSg SINE Alu 1 279 -31 467 288 40 29 chr12 63360431 63360709 -80425746 + L1ME LINE L1 1883 2163 -4233 790 326 89 10 chr12 63360752 63361157 -80425298 - L1MDa LINE L1 -5877 844 408 1138 229 17 59 chr12 63361170 63361444 -80425011 + L1ME LINE L1 5384 5641 -594 2205 105 0 6 chr12 63361444 63361757 -80424698 - AluSq SINE Alu 0 313 3 1138 229 17 59 chr12 63361757 63361836 -80424619 + L1ME LINE L1 5641 5722 -513 352 237 65 0 chr12 63361839 63361932 -80424523 + L1MD3 LINE L1 7719 7817 -178 353 145 0 0 chr12 63361958 63362020 -80424435 - L1MC1 LINE L1 -10 6323 6262 564 208 107 0 chr12 63362130 63362279 -80424176 + L1MA9 LINE L1 6115 6279 -33 605 146 2 42 chr12 63362280 63362415 -80424040 + L1MC/D LINE L1 5304 5434 -739 1573 184 3 44 chr12 63362591 63362911 -80423544 + AluJb SINE Alu 6 312 0 602 246 37 0 chr12 63362915 63363049 -80423406 - MLT1A1 LTR MaLR 0 365 227 465 230 44 9 chr12 63363050 63363163 -80423292 - MLT1A1 LTR MaLR -248 117 1 2180 178 34 39 chr12 63364124 63364683 -80421772 + LTR49 LTR ERV1 107 569 -26 198 103 0 0 chr12 63364869 63364898 -80421557 + (A)n Simple_repeat Simple_repeat 1 29 0 21 57 0 0 chr12 63365330 63365365 -80421090 + AT_rich Low_complexity Low_complexity 1 35 0 240 86 0 0 chr12 63365704 63365739 -80420716 + (TG)n Simple_repeat Simple_repeat 2 36 0 1852 224 47 92 chr12 63366415 63367139 -80419316 - LTR8 LTR ERV1 0 691 1 751 196 0 0 chr12 63367812 63367945 -80418510 - FLAM_C SINE Alu 0 133 1 190 184 46 11 chr12 63368535 63368622 -80417833 + (TATG)n Simple_repeat Simple_repeat 2 91 0 369 152 36 29 chr12 63368810 63368948 -80417507 + (TA)n Simple_repeat Simple_repeat 1 139 0 474 308 169 20 chr12 63369089 63369443 -80417012 - L2 LINE L2 -527 2787 2381 236 319 65 49 chr12 63369465 63369650 -80416805 + L2 LINE L2 2452 2639 -675 21431 184 13 8 chr12 63370451 63370794 -80415661 + L1PA10 LINE L1 1119 1459 -4712 2123 60 0 15 chr12 63370794 63371060 -80415395 + AluY SINE Alu 50 311 0 21431 184 13 8 chr12 63371060 63373228 -80413227 + L1PA10 LINE L1 1459 3615 -2556 2229 129 34 14 chr12 63373228 63373585 -80412870 + THE1B LTR MaLR 1 364 0 10113 125 19 6 chr12 63373585 63375145 -80411310 + THE1B-int LTR MaLR 1 1580 0 1883 171 51 17 chr12 63375145 63375497 -80410958 + THE1B LTR MaLR 1 364 0 21431 184 13 8 chr12 63375497 63377274 -80409181 + L1PA10 LINE L1 3614 5428 -743 13070 137 10 5 chr12 63377275 63380233 -80406222 - L1PA8A LINE L1 0 6131 3169 4721 125 33 0 chr12 63380233 63380960 -80405495 + L1PA10 LINE L1 5416 6166 -2 1814 203 21 12 chr12 63380962 63381483 -80404972 + L1M4 LINE L1 4896 5420 -745 450 212 59 47 chr12 63381490 63381660 -80404795 - L1M4 LINE L1 -2140 4242 4071 411 282 33 13 chr12 63381651 63381852 -80404603 - L1MB7 LINE L1 0 6184 5970 * 996 318 60 11 chr12 63381871 63382501 -80403954 - L1M4 LINE L1 -4563 1821 1161 330 331 100 4 chr12 63382527 63383038 -80403417 + L1ME LINE L1 4763 5322 -824 248 313 90 30 chr12 63383166 63383367 -80403088 + L1ME LINE L1 5439 5651 -513 480 84 0 0 chr12 63383492 63383563 -80402892 - L1MA6 LINE L1 -4 6296 6226 1669 164 58 18 chr12 63383571 63383901 -80402554 - MER61A LTR ERV1 0 343 1 18062 106 28 14 chr12 63383901 63383963 -80402492 - MER61A-int LTR ERV1 0 5217 5157 2180 76 17 0 chr12 63383963 63384253 -80402202 + AluY SINE Alu 1 295 -16 18062 106 28 14 chr12 63384253 63387182 -80399273 - MER61A-int LTR ERV1 -60 5157 2140 183 333 54 0 chr12 63387188 63387281 -80399174 - L3 LINE CR1 -300 1277 1180 1645 115 80 10 chr12 63387281 63387569 -80398886 - MER61-int LTR ERV1 -3170 2047 1740 34 24 0 0 chr12 63387749 63387790 -80398665 + AT_rich Low_complexity Low_complexity 1 41 0 224 186 17 0 chr12 63388001 63388060 -80398395 + (TA)n Simple_repeat Simple_repeat 1 60 0 7146 209 45 17 chr12 63388169 63389744 -80396711 + MER52A LTR ERV1 4 1755 0 2283 90 0 0 chr12 63389937 63390238 -80396217 - AluY SINE Alu -10 301 1 27 0 0 0 chr12 63390752 63390779 -80395676 + AT_rich Low_complexity Low_complexity 1 27 0 864 313 58 37 chr12 63391215 63391647 -80394808 + LTR16B LTR ERVL 1 441 -23 34 65 0 0 chr12 63394229 63394291 -80392164 + AT_rich Low_complexity Low_complexity 1 62 0 297 0 0 0 chr12 63394302 63394335 -80392120 + (CA)n Simple_repeat Simple_repeat 2 34 0 294 372 8 30 chr12 63394405 63394569 -80391886 + MIR SINE MIR 2 162 -46 1009 266 67 43 chr12 63394600 63394937 -80391518 - L1ME1 LINE L1 -8 6158 5806 737 225 12 12 chr12 63394937 63395097 -80391358 + FRAM SINE Alu 1 160 -6 1009 266 67 43 chr12 63395097 63395225 -80391230 - L1ME1 LINE L1 -360 5806 5682 1676 286 82 38 chr12 63395277 63396234 -80390221 + L1M4 LINE L1 3257 4255 -1891 912 248 27 42 chr12 63396715 63396985 -80389470 + L1MA7 LINE L1 5960 6226 -65 312 27 0 0 chr12 63396985 63397022 -80389433 + (TG)n Simple_repeat Simple_repeat 2 38 0 912 248 27 42 chr12 63397022 63397082 -80389373 + L1MA7 LINE L1 6226 6285 -6 734 182 6 44 chr12 63397109 63397268 -80389187 - MLT1B LTR MaLR -46 344 192 757 224 27 36 chr12 63397305 63397528 -80388927 - L1PB4 LINE L1 -2 6154 5934 2244 117 0 0 chr12 63398151 63398451 -80388004 + AluSg SINE Alu 1 300 -10 369 192 0 0 chr12 63398712 63398785 -80387670 + L1PB4 LINE L1 6070 6142 -14 254 307 105 9 chr12 63398897 63399011 -80387444 + MIR SINE MIR 81 205 -57 1267 307 60 39 chr12 63399353 63399972 -80386483 - L2 LINE L2 -711 2603 1972 21 82 0 0 chr12 63400504 63400553 -80385902 + AT_rich Low_complexity Low_complexity 1 49 0 533 275 148 41 chr12 63400883 63400949 -80385506 + L1M4 LINE L1 3065 3123 -3023 210 189 0 19 chr12 63400949 63401002 -80385453 + A-rich Low_complexity Low_complexity 2 53 0 533 275 148 41 chr12 63401002 63401020 -80385435 + L1M4 LINE L1 3123 3138 -3008 27 0 0 0 chr12 63401020 63401047 -80385408 + AT_rich Low_complexity Low_complexity 1 27 0 533 275 148 41 chr12 63401047 63402178 -80384277 + L1M4 LINE L1 3138 4524 -1622 1405 234 46 6 chr12 63402183 63402529 -80383926 - MLT2C1 LTR ERVL -37 360 1 257 308 70 58 chr12 63402534 63402706 -80383749 - MIR SINE MIR -84 178 5 21 0 0 0 chr12 63404044 63404065 -80382390 + AT_rich Low_complexity Low_complexity 1 21 0 1561 156 203 14 chr12 63405145 63405505 -80380950 - MSTA LTR MaLR 0 428 1 8461 160 11 45 chr12 63405506 63407138 -80379317 - MSTA-int LTR MaLR -1 1579 3 1757 143 207 11 chr12 63407140 63407498 -80378957 - MSTA LTR MaLR 0 428 1 957 277 69 18 chr12 63407499 63407892 -80378563 + LTR38 LTR ERV1 144 556 0 208 187 13 13 chr12 63408207 63408250 -80378205 + (TA)n Simple_repeat Simple_repeat 2 47 -29 407 167 13 0 chr12 63408250 63408328 -80378127 - MADE1 DNA Mariner -1 79 1 208 187 13 13 chr12 63408328 63408359 -80378096 + (TA)n Simple_repeat Simple_repeat 46 76 0 421 300 104 67 chr12 63408527 63408719 -80377736 - L2 LINE L2 -343 2971 2788 2252 96 0 3 chr12 63408719 63409020 -80377435 - AluSq SINE Alu -13 300 1 421 300 104 67 chr12 63409020 63409230 -80377225 - L2 LINE L2 -526 2788 2554 225 194 67 15 chr12 63409249 63409383 -80377072 + (TA)n Simple_repeat Simple_repeat 1 141 0 32 0 0 0 chr12 63409808 63409840 -80376615 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 63409889 63409924 -80376531 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr12 63409963 63409989 -80376466 + AT_rich Low_complexity Low_complexity 1 26 0 3470 86 0 4 chr12 63510009 63510474 -80275981 - HERVL-A2 LTR ERVL -5191 463 1 2595 132 76 5 chr12 63510474 63510532 -80275923 - MLT2A2 LTR ERVL 0 453 401 445 32 32 0 chr12 63510532 63510595 -80275860 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2595 132 76 5 chr12 63510595 63510959 -80275496 - MLT2A2 LTR ERVL -52 401 1 1575 206 129 22 chr12 63511193 63511595 -80274860 + MLT2B1 LTR ERVL 1 445 -75 275 182 9 27 chr12 63511595 63511705 -80274750 + (TA)n Simple_repeat Simple_repeat 2 109 0 2735 189 9 11 chr12 63511742 63512270 -80274185 - Tigger1 DNA MER2_type 0 2418 1892 383 269 74 46 chr12 63513240 63513415 -80273040 - MIR SINE MIR -2 260 81 27 29 0 0 chr12 63514169 63514203 -80272252 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr12 63514395 63514419 -80272036 + AT_rich Low_complexity Low_complexity 1 24 0 281 368 77 11 chr12 63514526 63514708 -80271747 - MIR SINE MIR -12 250 57 1960 123 7 10 chr12 63514921 63515213 -80271242 - AluSx SINE Alu -21 291 1 23 0 0 0 chr12 63515376 63515399 -80271056 + AT_rich Low_complexity Low_complexity 1 23 0 872 259 9 26 chr12 63517271 63517499 -80268956 - MER58A DNA MER1_type 0 224 1 1446 143 39 0 chr12 63517608 63517838 -80268617 - AluSc SINE Alu -16 293 55 2091 117 0 3 chr12 63518396 63518687 -80267768 - AluSx SINE Alu -22 290 1 2094 228 36 68 chr12 63518705 63519337 -80267118 - LTR9 LTR ERV1 0 612 1 1330 169 8 16 chr12 63519337 63519580 -80266875 - HUERS-P3 LTR ERV1 0 8919 8679 254 105 0 0 chr12 63519905 63519943 -80266512 - LOR1-int LTR ERV1 -6080 2040 2003 8326 164 30 2 chr12 63520044 63521492 -80264963 - Tigger1 DNA MER2_type -872 1546 58 274 103 0 0 chr12 63521499 63521538 -80264917 + MLT2C1 LTR ERVL 357 395 -2 523 277 75 77 chr12 63521540 63522680 -80263775 + L1ME2 LINE L1 792 1926 -4470 * 1472 139 47 22 chr12 63522676 63522950 -80263505 - L1M1 LINE L1 -768 5535 5255 358 266 19 58 chr12 63522981 63523135 -80263320 + L1ME2 LINE L1 4772 4919 -1296 1620 279 73 29 chr12 63523331 63524058 -80262397 + L1ME2 LINE L1 5469 6227 -6 268 317 0 37 chr12 63525588 63525670 -80260785 + MIR3 SINE MIR 120 198 -10 1574 164 43 15 chr12 63525862 63526191 -80260264 - MER44D DNA MER2_type -1 608 1 1311 222 7 14 chr12 63526582 63526870 -80259585 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr12 63527575 63527598 -80258857 + AT_rich Low_complexity Low_complexity 1 23 0 823 211 0 0 chr12 63528233 63528394 -80258061 - MLT1B LTR MaLR -229 161 1 985 223 27 10 chr12 63528685 63529558 -80256897 - L1MB5 LINE L1 0 6174 5241 3968 168 45 31 chr12 63529562 63530453 -80256002 + MER4D LTR ERV1 1 664 0 6602 74 5 1 chr12 63530548 63531424 -80255031 - L1PA7 LINE L1 0 6154 5276 18261 135 20 46 chr12 63531429 63534874 -80251581 - L1P LINE L1 -2355 3791 434 6006 227 56 33 chr12 63534864 63536226 -80250229 - L1P3 LINE L1 -3817 2644 1206 * 207 100 0 0 chr12 63536226 63536256 -80250199 + (TTG)n Simple_repeat Simple_repeat 1 30 0 6006 227 56 33 chr12 63536256 63537481 -80248974 - L1P3 LINE L1 -5255 1206 10 617 205 83 0 chr12 63537492 63537648 -80248807 - L1M3c LINE L1 -4584 2453 2285 605 326 107 21 chr12 63537635 63537963 -80248492 - L1M3c LINE L1 -5168 1862 1507 * 2377 279 44 100 chr12 63537972 63539820 -80246635 - L1M3e LINE L1 -5284 1746 1 323 329 184 0 chr12 63540412 63540619 -80245836 + L1ME LINE L1 1116 1360 -5056 319 214 93 103 chr12 63540646 63540861 -80245594 + L1ME LINE L1 1232 1448 -5159 3518 153 12 3 chr12 63540861 63541462 -80244993 + L1PB3 LINE L1 5542 6147 -7 319 214 93 103 chr12 63541462 63541723 -80244732 + L1ME LINE L1 1448 1882 -4725 270 277 105 34 chr12 63542063 63542330 -80244125 + L1ME LINE L1 2241 2526 -4081 253 258 78 23 chr12 63542381 63542509 -80243946 + L1ME LINE L1 2560 2694 -3732 27 0 0 0 chr12 63543193 63543220 -80243235 + AT_rich Low_complexity Low_complexity 1 27 0 693 350 33 40 chr12 63543687 63544110 -80242345 - L2 LINE L2 -529 2785 2366 550 329 54 17 chr12 63544780 63545020 -80241435 + MIR SINE MIR 1 249 -13 652 103 27 151 chr12 63545126 63545311 -80241144 + L1MA7 LINE L1 6130 6291 0 974 138 0 0 chr12 63546141 63546286 -80240169 - AluSg/x SINE Alu -11 301 157 3303 239 63 13 chr12 63546413 63547236 -80239219 + L1M2b LINE L1 1 1177 -6032 766 204 0 0 chr12 63547218 63547525 -80238930 + L1ME LINE L1 2731 3166 -3260 * 1025 184 38 11 chr12 63547525 63547710 -80238745 + MSTB LTR MaLR 1 190 -236 830 290 78 6 chr12 63547717 63548048 -80238407 - L1ME1 LINE L1 -63 6103 5749 1574 197 0 0 chr12 63548052 63548342 -80238113 + L1PA16 LINE L1 5858 6147 -19 4745 243 45 69 chr12 63548357 63549153 -80237302 - L1M4c LINE L1 -1611 4771 3958 1907 167 0 0 chr12 63549153 63549440 -80237015 - AluSx SINE Alu -21 291 5 4745 243 45 69 chr12 63549440 63549661 -80236794 - L1M4c LINE L1 -2424 3958 3733 306 0 0 0 chr12 63549661 63549695 -80236760 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4745 243 45 69 chr12 63549695 63550629 -80235826 - L1M4c LINE L1 -2649 3733 2865 5397 161 33 39 chr12 63550683 63551861 -80234594 + MER11C LTR ERVK 1 1071 0 2020 200 29 49 chr12 63551861 63553070 -80233385 - L1M4c LINE L1 -3579 2803 1519 * 2862 202 144 22 chr12 63553060 63553473 -80232982 - L1M4c LINE L1 -5542 842 481 1974 152 7 0 chr12 63553473 63553776 -80232679 + AluSx SINE Alu 5 309 -3 2862 202 144 22 chr12 63553776 63554098 -80232357 - L1M4c LINE L1 -5903 481 17 3016 256 57 20 chr12 63554109 63555282 -80231173 - L1M4 LINE L1 -968 5178 3962 189 68 68 0 chr12 63555413 63555457 -80230998 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1629 192 106 33 chr12 63555684 63556043 -80230412 - MSTD LTR MaLR -11 385 1 247 170 0 0 chr12 63556136 63556183 -80230272 - Alu SINE Alu -8 294 248 35 54 0 0 chr12 63556565 63556621 -80229834 + AT_rich Low_complexity Low_complexity 1 56 0 423 251 23 21 chr12 63557478 63557678 -80228777 + MSTA LTR MaLR 1 247 -181 1648 107 16 0 chr12 63557678 63557921 -80228534 + L1P LINE L1 4385 4631 -1515 1907 154 19 35 chr12 63558028 63558397 -80228058 + THE1B LTR MaLR 2 364 0 893 264 78 107 chr12 63559632 63560643 -80225812 + MER52A LTR ERV1 647 1746 -9 697 482 29 10 chr12 63560650 63561036 -80225419 - MLT1C LTR MaLR -33 434 42 691 334 141 37 chr12 63561037 63561928 -80224527 + L2 LINE L2 2034 3016 -297 348 280 144 8 chr12 63562699 63562824 -80223631 + MIR SINE MIR 2 143 -119 1846 218 73 42 chr12 63562980 63563485 -80222970 - MER77 LTR ERV1 -6 599 79 289 305 11 0 chr12 63563532 63563627 -80222828 + MIR SINE MIR 152 247 -15 255 170 0 0 chr12 63563903 63563950 -80222505 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2533 181 77 11 chr12 63564185 63564679 -80221776 - L1MA9 LINE L1 -2 6310 5773 227 30 0 30 chr12 63564679 63564712 -80221743 + (TG)n Simple_repeat Simple_repeat 2 33 0 2533 181 77 11 chr12 63564712 63564774 -80221681 - L1MA9 LINE L1 -539 5773 5717 998 197 116 35 chr12 63566195 63566479 -80219976 - L1MA10 LINE L1 0 6334 6028 37 23 0 0 chr12 63566483 63566527 -80219928 + AT_rich Low_complexity Low_complexity 1 44 0 12700 93 4 2 chr12 63566536 63569073 -80217382 - L1PA7 LINE L1 -9 6145 3592 389 151 186 0 chr12 63569079 63569165 -80217290 - AluJb SINE Alu -8 294 193 22 56 0 0 chr12 63569221 63569257 -80217198 + AT_rich Low_complexity Low_complexity 1 36 0 1902 170 39 41 chr12 63569363 63569752 -80216703 + MER61D LTR ERV1 114 501 0 14919 137 11 2 chr12 63570897 63573123 -80213332 - HUERS-P3 LTR ERV1 -2135 6784 4539 7324 167 33 13 chr12 63573116 63574850 -80211605 - HUERS-P3 LTR ERV1 -5314 2104 1235 * 1790 223 16 10 chr12 63574851 63575237 -80211218 - HUERS-P3 LTR ERV1 -8531 388 1 2212 205 48 67 chr12 63575237 63575861 -80210594 - LTR9 LTR ERV1 0 612 1 1884 223 12 48 chr12 63576169 63576653 -80209802 - MLT1C LTR MaLR 0 467 1 26 50 0 0 chr12 63576832 63576872 -80209583 + AT_rich Low_complexity Low_complexity 1 40 0 1629 227 65 20 chr12 63577583 63578042 -80208413 - L1MD3 LINE L1 -107 7888 7409 2956 160 16 17 chr12 63578042 63578543 -80207912 - LTR10A LTR ERV1 -13 620 72 2410 93 3 0 chr12 63578543 63578853 -80207602 + AluSx SINE Alu 1 311 -1 2956 160 16 17 chr12 63578853 63578925 -80207530 - LTR10A LTR ERV1 -561 72 1 564 268 0 0 chr12 63578925 63579047 -80207408 - MLT1F1 LTR MaLR -445 122 1 634 280 97 11 chr12 63579053 63579336 -80207119 - L1MC4a LINE L1 -1151 6634 6339 368 230 96 24 chr12 63579375 63579584 -80206871 - L1M4 LINE L1 -1655 4491 4268 302 306 46 0 chr12 63579612 63579720 -80206735 + MER58B DNA MER1_type 206 318 -23 753 277 45 40 chr12 63579756 63580021 -80206434 - L1M4 LINE L1 -2454 3692 3430 1834 149 17 14 chr12 63580021 63580350 -80206105 - AluSx SINE Alu 0 312 3 753 277 45 40 chr12 63580350 63580703 -80205752 - L1M4 LINE L1 -2716 3430 2918 1336 278 62 6 chr12 63580738 63581267 -80205188 - L1M4 LINE L1 -3372 2774 2216 2433 60 0 0 chr12 63581342 63581642 -80204813 + AluY SINE Alu 1 300 -11 955 267 23 14 chr12 63582024 63582318 -80204137 - MLT1D LTR MaLR -2 503 228 438 172 11 43 chr12 63582312 63582405 -80204050 - MLT1D LTR MaLR -415 90 1 * 293 240 48 10 chr12 63582493 63582597 -80203858 - L1MCc LINE L1 -6279 144 37 2140 145 99 8 chr12 63582746 63583138 -80203317 + MSTA LTR MaLR 1 428 0 37 23 0 0 chr12 63585405 63585449 -80201006 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr12 63586287 63586315 -80200140 + AT_rich Low_complexity Low_complexity 1 28 0 2490 18 0 0 chr12 63586416 63586694 -80199761 + AluYb8 SINE Alu 35 312 -6 1471 117 4 4 chr12 63587814 63588044 -80198411 - L1PA13 LINE L1 -5 6158 5929 366 240 74 16 chr12 63588921 63589042 -80197413 + MER69 DNA AcHobo 2 129 -1097 186 254 18 0 chr12 63589714 63589769 -80196686 - L2 LINE L2 -1 3312 3257 187 307 102 36 chr12 63590280 63590417 -80196038 + MIR SINE MIR 8 153 -109 6499 224 54 15 chr12 63590466 63592459 -80193996 - L1MA5A LINE L1 0 6297 4060 261 0 0 0 chr12 63592459 63592488 -80193967 + (TG)n Simple_repeat Simple_repeat 2 30 0 6499 224 54 15 chr12 63592488 63593465 -80192990 - L1MA5A LINE L1 -2237 4060 3122 21152 195 29 23 chr12 63593489 63600210 -80186245 - L1PA11 LINE L1 0 7612 10 1198 258 0 3 chr12 63600220 63600549 -80185906 - L1MA5A LINE L1 -3048 3098 2771 1380 199 15 0 chr12 63600550 63600822 -80185633 - L1PA16 LINE L1 -3 6866 6591 3768 194 19 6 chr12 63601089 63602623 -80183832 - L1PA16 LINE L1 -258 6611 5058 2767 182 2 0 chr12 63602626 63603076 -80183379 - L1PA16 LINE L1 -6398 451 1 1380 246 26 3 chr12 63603118 63603468 -80182987 - L1MA5A LINE L1 -3405 2741 2384 238 65 0 0 chr12 63603468 63603499 -80182956 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1249 61 12 0 chr12 63603499 63603663 -80182792 - AluYa5 SINE Alu -1 314 119 327 221 0 0 chr12 63603675 63603752 -80182703 - L1MA5A LINE L1 -3783 2363 2287 * 2255 266 38 8 chr12 63603750 63604613 -80181842 - L1M4c LINE L1 -3911 2879 1990 358 185 11 11 chr12 63604614 63604706 -80181749 + CT-rich Low_complexity Low_complexity 3 94 0 3657 269 40 36 chr12 63604707 63606509 -80179946 - L1M4c LINE L1 -4760 2029 3 1191 199 80 42 chr12 63606556 63606917 -80179538 - THE1C LTR MaLR 0 375 1 8645 159 7 44 chr12 63606917 63608555 -80177900 - THE1C-int LTR MaLR 0 1580 3 1343 191 97 29 chr12 63608557 63608908 -80177547 - THE1C LTR MaLR 0 375 1 219 253 48 12 chr12 63608995 63609078 -80177377 - MIR SINE MIR -10 252 167 210 328 48 32 chr12 63609834 63609959 -80176496 + L2 LINE L2 2648 2774 -540 505 335 113 43 chr12 63610045 63610442 -80176013 + L2 LINE L2 2889 3313 0 2375 41 0 0 chr12 63610778 63611068 -80175387 + L1PA4 LINE L1 5866 6155 0 27 81 0 0 chr12 63611201 63611263 -80175192 + AT_rich Low_complexity Low_complexity 1 62 0 726 340 37 3 chr12 63611291 63611585 -80174870 - MLT1I LTR MaLR 0 409 106 2947 106 7 0 chr12 63611677 63612091 -80174364 + LTR3 LTR ERVK 7 423 -9 1381 221 7 26 chr12 63612595 63612898 -80173557 - AluJb SINE Alu -15 297 1 1703 178 154 5 chr12 63612983 63613353 -80173102 + MSTA LTR MaLR 1 425 -3 23 0 0 0 chr12 63613382 63613405 -80173050 + AT_rich Low_complexity Low_complexity 1 23 0 229 350 177 27 chr12 63613445 63613631 -80172824 - MIR SINE MIR -8 254 41 515 359 33 9 chr12 63614031 63614243 -80172212 + MIR SINE MIR 12 228 -34 1986 138 7 0 chr12 63614309 63614600 -80171855 + AluSg SINE Alu 1 293 -17 839 258 153 7 chr12 63614774 63615061 -80171394 + L1PA12 LINE L1 11 339 -7242 2114 139 31 19 chr12 63615064 63615424 -80171031 - THE1B LTR MaLR 0 364 1 4215 131 34 0 chr12 63615424 63616051 -80170404 - THE1B-int LTR MaLR 0 1580 933 4024 90 4 11 chr12 63616050 63616597 -80169858 - THE1B-int LTR MaLR -888 692 150 * 659 310 48 0 chr12 63616593 63616780 -80169675 - L1PA12 LINE L1 -7048 533 338 * 2221 149 5 19 chr12 63616780 63617149 -80169306 + THE1B LTR MaLR 1 364 0 1268 123 11 0 chr12 63617149 63617336 -80169119 + THE1B-int LTR MaLR 1 189 -1391 3711 174 18 0 chr12 63617336 63618022 -80168433 + L1PA13 LINE L1 5464 6161 -2 249 154 46 15 chr12 63619293 63619390 -80167065 + (TA)n Simple_repeat Simple_repeat 1 99 0 547 302 33 11 chr12 63619773 63619955 -80166500 + MLT1I LTR MaLR 108 293 -116 29 60 0 0 chr12 63621674 63621724 -80164731 + AT_rich Low_complexity Low_complexity 1 50 0 251 236 0 11 chr12 63621733 63621822 -80164633 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 2240 128 24 19 chr12 63622327 63622741 -80163714 - L1MA5A LINE L1 -6 6291 5876 215 356 104 0 chr12 63622825 63622940 -80163515 - MIR SINE MIR -65 197 71 206 337 0 54 chr12 63623450 63623542 -80162913 - L2 LINE L2 0 3272 3186 312 244 12 0 chr12 63623855 63623941 -80162514 + (ATG)n Simple_repeat Simple_repeat 2 88 0 690 189 0 0 chr12 63624484 63624606 -80161849 + FLAM_C SINE Alu 1 122 -11 1332 233 41 16 chr12 63624929 63625371 -80161084 - L1M4 LINE L1 -759 5387 4935 1567 274 45 10 chr12 63625376 63625993 -80160462 - L1MEc LINE L1 -3113 3102 2464 422 143 11 0 chr12 63625995 63626086 -80160369 + (TA)n Simple_repeat Simple_repeat 2 93 0 831 218 32 8 chr12 63626086 63626338 -80160117 - L1M4 LINE L1 -919 5227 4970 195 42 0 0 chr12 63626402 63626426 -80160029 + (TA)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr12 63626449 63626470 -80159985 + (TG)n Simple_repeat Simple_repeat 1 21 0 1566 165 91 26 chr12 63626471 63626811 -80159644 - MLT1A1 LTR MaLR -3 362 1 672 280 70 23 chr12 63626892 63627149 -80159306 - MLT1C LTR MaLR 0 467 199 425 211 0 81 chr12 63627180 63627303 -80159152 + L1 LINE L1 4239 4351 -1795 554 201 45 22 chr12 63627350 63627484 -80158971 + MLT1A1 LTR MaLR 40 176 -189 552 201 41 108 chr12 63627474 63627565 -80158890 - MLT1C LTR MaLR -285 182 109 * 2048 131 3 22 chr12 63627565 63627879 -80158576 + AluSx SINE Alu 1 308 -4 552 201 41 108 chr12 63627879 63627981 -80158474 - MLT1C LTR MaLR -358 109 2 240 219 151 14 chr12 63627982 63628055 -80158400 - L1MEc LINE L1 -3984 2412 2330 1409 181 20 4 chr12 63628064 63628469 -80157986 + LTR69 LTR ERVL 1 473 -115 3366 203 76 21 chr12 63628597 63629580 -80156875 - L1MB2 LINE L1 -27 6144 5113 365 307 13 92 chr12 63629600 63629828 -80156627 + L2 LINE L2 3055 3264 -49 35 63 0 0 chr12 63629966 63630029 -80156426 + AT_rich Low_complexity Low_complexity 1 63 0 186 103 0 0 chr12 63630125 63630154 -80156301 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 295 410 60 26 chr12 63630240 63630384 -80156071 - L2 LINE L2 -271 3042 2904 1837 142 29 0 chr12 63630384 63630665 -80155790 - AluSx SINE Alu -21 291 3 295 410 60 26 chr12 63630665 63631003 -80155452 - L2 LINE L2 -409 2904 2543 367 279 110 19 chr12 63631003 63631157 -80155298 + LTR40a LTR ERVL 1 168 -351 453 329 56 5 chr12 63631157 63631373 -80155082 + L1MEc LINE L1 347 573 -5823 * 899 248 53 26 chr12 63631372 63631751 -80154704 + L1MEc LINE L1 849 1237 -5159 3452 211 15 45 chr12 63631787 63633304 -80153151 - L1MA5 LINE L1 -271 6029 4564 24 32 0 0 chr12 63633403 63633434 -80153021 + AT_rich Low_complexity Low_complexity 1 31 0 6829 69 8 0 chr12 63633519 63634791 -80151664 - L1PA7 LINE L1 -1 6153 4877 7722 272 42 42 chr12 63634864 63637833 -80148622 - L1M1 LINE L1 -4367 2365 504 1412 200 73 0 chr12 63637833 63638108 -80148347 - AluJo SINE Alu -16 296 2 7722 272 42 42 chr12 63638108 63638609 -80147846 - L1M1 LINE L1 -6228 504 5 3543 243 45 12 chr12 63639156 63640526 -80145929 + L1M2 LINE L1 2551 3969 -2879 1614 86 0 9 chr12 63641231 63641451 -80145004 - AluSg/x SINE Alu -13 297 80 339 341 100 35 chr12 63641497 63641758 -80144697 + HAL1b LINE L1 8 285 -1063 204 268 0 0 chr12 63642002 63642043 -80144412 - L2 LINE L2 -87 3226 3186 225 0 0 0 chr12 63642059 63642084 -80144371 + (TG)n Simple_repeat Simple_repeat 1 25 0 534 215 160 0 chr12 63642121 63642265 -80144190 - L1M4 LINE L1 -5020 1522 1356 1520 176 33 19 chr12 63642265 63642572 -80143883 - L1PA16 LINE L1 0 6166 5856 2657 212 12 0 chr12 63642574 63643136 -80143319 + L1M2 LINE L1 4556 5124 -1724 1839 241 38 9 chr12 63643308 63643757 -80142698 - MER82 DNA MER2_type 0 653 192 3406 203 17 18 chr12 63643908 63644740 -80141715 + L1MC2 LINE L1 5404 6344 0 408 252 49 56 chr12 63645056 63645199 -80141256 - MER82 DNA MER2_type -510 143 2 661 203 16 27 chr12 63645252 63645439 -80141016 - L1M4 LINE L1 -5330 1212 1028 268 227 40 40 chr12 63646839 63646914 -80139541 - MER116 DNA Mariner -1 79 5 689 183 15 22 chr12 63647251 63647388 -80139067 - AluJb SINE Alu -9 303 168 412 148 0 0 chr12 63647395 63647456 -80138999 - AluS SINE Alu -248 61 1 225 247 99 0 chr12 63648515 63648596 -80137859 + L1MC4 LINE L1 6615 6703 -1339 198 0 0 0 chr12 63648596 63648618 -80137837 + (TG)n Simple_repeat Simple_repeat 2 23 0 4347 214 67 12 chr12 63648862 63650554 -80135901 - L1MA10 LINE L1 -2 6332 4538 1105 115 149 5 chr12 63650983 63651191 -80135264 + L1M2 LINE L1 5335 5572 -719 1467 160 19 19 chr12 63652138 63652400 -80134055 + L1PA15 LINE L1 5882 6143 -22 13876 38 8 0 chr12 63652834 63655638 -80130817 + L1PA4 LINE L1 3333 6155 0 249 33 0 0 chr12 63656274 63656304 -80130151 + (TG)n Simple_repeat Simple_repeat 2 31 0 271 207 69 0 chr12 63656544 63656602 -80129853 + L1M4 LINE L1 2957 3018 -3128 198 327 135 19 chr12 63658117 63658221 -80128234 - MIR SINE MIR -135 127 12 1500 242 37 8 chr12 63658265 63658620 -80127835 + MLT1A1 LTR MaLR 1 365 0 8400 182 40 16 chr12 63658949 63659940 -80126515 - L1MA4 LINE L1 -250 6050 5085 2285 107 0 0 chr12 63659940 63660248 -80126207 - AluSx SINE Alu -4 308 1 8400 182 40 16 chr12 63660248 63661651 -80124804 - L1MA4 LINE L1 -1215 5085 3593 33 56 0 0 chr12 63662837 63662891 -80123564 + AT_rich Low_complexity Low_complexity 1 54 0 33 25 0 0 chr12 63662915 63662955 -80123500 + AT_rich Low_complexity Low_complexity 1 40 0 995 127 16 13 chr12 63663225 63663396 -80123059 - L1ME LINE L1 -418 5752 5580 3351 50 0 2 chr12 63663396 63663815 -80122640 + L1PA5 LINE L1 5734 6154 0 22 0 0 0 chr12 63664460 63664482 -80121973 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 63665039 63665075 -80121380 + AT_rich Low_complexity Low_complexity 1 36 0 2713 110 3 3 chr12 63665355 63665728 -80120727 - THE1C LTR MaLR -2 373 1 8928 153 41 5 chr12 63665728 63667252 -80119203 - THE1C-int LTR MaLR 0 1580 1 2423 148 0 3 chr12 63667252 63667625 -80118830 - THE1C LTR MaLR 0 375 4 184 135 68 0 chr12 63667707 63667781 -80118674 + (TA)n Simple_repeat Simple_repeat 1 79 0 207 0 0 0 chr12 63667867 63667890 -80118565 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 357 43 0 0 chr12 63667889 63667936 -80118519 + (TG)n Simple_repeat Simple_repeat 2 48 0 319 289 44 0 chr12 63668024 63668159 -80118296 - L1M4 LINE L1 -2327 3819 3679 1951 142 0 3 chr12 63668298 63668587 -80117868 - AluSx SINE Alu -24 288 1 26 0 0 0 chr12 63668685 63668711 -80117744 + AT_rich Low_complexity Low_complexity 1 26 0 527 125 47 6 chr12 63668731 63669080 -80117375 + (TA)n Simple_repeat Simple_repeat 1 363 0 30 27 0 0 chr12 63669089 63669126 -80117329 + AT_rich Low_complexity Low_complexity 1 37 0 44 0 0 0 chr12 63669281 63669325 -80117130 + AT_rich Low_complexity Low_complexity 1 44 0 532 101 65 0 chr12 63669329 63669498 -80116957 + (TA)n Simple_repeat Simple_repeat 1 180 0 424 300 73 17 chr12 63669558 63669915 -80116540 - L1M4 LINE L1 -2725 3421 3045 3075 149 8 4 chr12 63670547 63671058 -80115397 - MER75 DNA T2_type -1 513 1 803 269 52 17 chr12 63671302 63671648 -80114807 - L1ME2 LINE L1 -202 6031 5674 638 267 15 37 chr12 63671665 63671935 -80114520 - L1ME2 LINE L1 -3028 3187 2924 * 28164 131 12 22 chr12 63671923 63671976 -80114479 + L1PA8 LINE L1 355 407 -6080 258 56 0 0 chr12 63671976 63672012 -80114443 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 28164 131 12 22 chr12 63672012 63674231 -80112224 + L1PA8 LINE L1 407 2646 -3841 297 0 0 0 chr12 63674231 63674264 -80112191 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 28164 131 12 22 chr12 63674264 63676735 -80109720 + L1PA8 LINE L1 2646 5127 -1360 189 0 0 0 chr12 63676735 63676756 -80109699 + (CAGAA)n Simple_repeat Simple_repeat 4 24 0 28164 131 12 22 chr12 63676756 63678096 -80108359 + L1PA8 LINE L1 5127 6479 -8 490 250 109 2 chr12 63678098 63678293 -80108162 - L1ME2 LINE L1 -3265 2950 2736 1615 264 33 95 chr12 63679284 63679864 -80106591 + MLT1E LTR MaLR 1 540 -53 4012 127 74 9 chr12 63679864 63680623 -80105832 + L1MA6 LINE L1 5492 6299 -1 1615 264 33 95 chr12 63680623 63680674 -80105781 + MLT1E LTR MaLR 540 593 0 1954 154 0 13 chr12 63680703 63681009 -80105446 + AluSx SINE Alu 1 302 -10 316 272 35 43 chr12 63682188 63682445 -80104010 - L1ME2 LINE L1 -5331 1065 811 259 356 9 26 chr12 63682801 63682916 -80103539 - L1ME2 LINE L1 -5951 445 333 304 291 66 46 chr12 63683021 63683172 -80103283 - L1ME2 LINE L1 -6129 267 114 23 0 0 0 chr12 63683373 63683396 -80103059 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 63683419 63683448 -80103007 + AT_rich Low_complexity Low_complexity 1 29 0 206 364 11 11 chr12 63685189 63685277 -80101178 + MIR3 SINE MIR 118 205 -3 1573 259 65 36 chr12 63685547 63686152 -80100303 - MLT1E2 LTR MaLR 0 626 5 248 331 107 8 chr12 63686507 63686628 -80099827 + MIR SINE MIR 73 205 -57 386 286 25 8 chr12 63687296 63687415 -80099040 + L2 LINE L2 3188 3308 -5 201 182 0 0 chr12 63687875 63687930 -80098525 + T-rich Low_complexity Low_complexity 1 55 0 36425 43 30 2 chr12 63687933 63693356 -80093099 - L1PA3 LINE L1 -4 6151 578 802 41 0 0 chr12 63693323 63693420 -80093035 - L1PA3 LINE L1 -6048 98 2 * 1827 159 7 0 chr12 63695027 63695354 -80091101 - AluSx SINE Alu 0 329 1 26 0 0 0 chr12 63695511 63695537 -80090918 + AT_rich Low_complexity Low_complexity 1 26 0 5101 136 2 29 chr12 63696516 63697441 -80089014 + L1PA8 LINE L1 4431 5330 -816 * 5407 110 0 0 chr12 63697440 63698213 -80088242 - L1P LINE L1 -1684 4462 3690 3688 72 0 4 chr12 63698213 63698701 -80087754 + L1PA7 LINE L1 5665 6151 -3 5311 126 20 2 chr12 63698701 63699537 -80086918 + L1PA8 LINE L1 5317 6172 0 1564 227 37 9 chr12 63699552 63699988 -80086467 - L1 LINE L1 -765 5381 4934 213 65 0 0 chr12 63700015 63700046 -80086409 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4020 109 14 40 chr12 63700047 63700700 -80085755 - L1PA8 LINE L1 -11 6476 5841 1578 97 5 7 chr12 63700802 63701150 -80085305 - L1PA8 LINE L1 -671 5812 5465 10257 141 17 13 chr12 63701153 63702970 -80083485 - L1PA8 LINE L1 -2046 4415 2591 7604 31 3 0 chr12 63703298 63704842 -80081613 - L1PA3 LINE L1 -4 6151 4605 5640 38 1 0 chr12 63704842 63705528 -80080927 + L1PA3 LINE L1 3922 4608 -1538 * 6160 227 19 46 chr12 63705525 63707865 -80078590 - L1PA8 LINE L1 -3837 2624 2 3096 106 9 6 chr12 63707877 63708641 -80077814 - L1P3 LINE L1 -335 5819 5053 1163 206 32 12 chr12 63708641 63708902 -80077553 + MSTC LTR MaLR 155 449 -8 608 84 0 0 chr12 63708902 63708985 -80077470 + L1PB1 LINE L1 5897 5979 -172 241 0 0 0 chr12 63708984 63709015 -80077440 - L1P LINE L1 -1087 5059 5029 * 306 351 69 22 chr12 63710034 63710265 -80076190 + MIR SINE MIR 17 258 -4 12593 214 37 25 chr12 63710855 63712075 -80074380 + L1MA7 LINE L1 1197 2401 -4126 2091 216 54 30 chr12 63712075 63712616 -80073839 - MLT2B3 LTR ERVL 0 554 1 12593 214 37 25 chr12 63712616 63716545 -80069910 + L1MA7 LINE L1 2401 6525 -2 3955 33 0 10 chr12 63717880 63718366 -80068089 + L1PA2 LINE L1 5675 6155 0 27663 49 2 2 chr12 63718458 63722738 -80063717 - L1PA4 LINE L1 -6 6149 1872 21 0 0 0 chr12 63723518 63723539 -80062916 + AT_rich Low_complexity Low_complexity 1 21 0 420 296 41 46 chr12 63723819 63724015 -80062440 - L1ME3A LINE L1 -214 5956 5762 321 218 0 0 chr12 63724231 63724309 -80062146 + CT-rich Low_complexity Low_complexity 6 83 0 1184 295 62 29 chr12 63724886 63725334 -80061121 - LTR16B LTR ERVL 0 464 2 1212 322 67 39 chr12 63725757 63726737 -80059718 - HERV16 LTR ERVL -580 4416 3409 2135 129 0 3 chr12 63726784 63727093 -80059362 + AluSq SINE Alu 4 311 -2 322 373 67 47 chr12 63727569 63727744 -80058711 - HERV16 LTR ERVL -2325 3160 2990 2648 94 14 6 chr12 63727744 63728105 -80058350 + THE1B LTR MaLR 1 364 0 322 373 67 47 chr12 63728105 63728379 -80058076 - HERV16 LTR ERVL -2495 2990 2702 21 0 0 0 chr12 63729688 63729709 -80056746 + AT_rich Low_complexity Low_complexity 1 21 0 238 349 89 7 chr12 63730061 63730207 -80056248 - MIR SINE MIR -16 246 89 21 57 0 0 chr12 63730411 63730446 -80056009 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr12 63730639 63730671 -80055784 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 63730816 63730845 -80055610 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr12 63731490 63731528 -80054927 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr12 63732999 63733028 -80053427 + AT_rich Low_complexity Low_complexity 1 29 0 3351 143 86 9 chr12 63733113 63733912 -80052543 - L1PB3 LINE L1 0 6166 5287 429 228 0 10 chr12 63733913 63734014 -80052441 - L1PB3 LINE L1 -92 6062 5963 3323 202 7 4 chr12 63734033 63734756 -80051699 - L1PB3 LINE L1 -865 5281 4557 291 28 0 0 chr12 63735090 63735126 -80051329 + (TTA)n Simple_repeat Simple_repeat 3 38 0 30507 38 1 0 chr12 63735126 63739643 -80046812 - L1PA3 LINE L1 -18 6137 1617 381 43 0 0 chr12 63739768 63739815 -80046640 + (TG)n Simple_repeat Simple_repeat 2 48 0 524 318 208 29 chr12 63739842 63740555 -80045900 + L2 LINE L2 2343 3179 -134 747 331 54 21 chr12 63741231 63741603 -80044852 - HERV16 LTR ERVL -2707 2289 1906 770 271 0 39 chr12 63741620 63741823 -80044632 - MLT2D LTR ERVL 0 414 220 591 384 34 38 chr12 63741949 63742507 -80043948 - HERV16 LTR ERVL -3427 1569 1014 237 296 12 0 chr12 63742527 63742608 -80043847 - L1MEc LINE L1 -4803 1593 1512 322 135 0 40 chr12 63742637 63742711 -80043744 + (TTTTC)n Simple_repeat Simple_repeat 2 72 0 189 0 0 0 chr12 63742821 63742842 -80043613 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 296 214 39 29 chr12 63742953 63743056 -80043399 - L1MEc LINE L1 -5279 926 823 22 35 0 0 chr12 63743573 63743602 -80042853 + AT_rich Low_complexity Low_complexity 1 29 0 962 34 0 0 chr12 63743740 63743857 -80042598 + L1PA5 LINE L1 6038 6154 0 2949 183 55 68 chr12 63743962 63744946 -80041509 + L1MB5 LINE L1 5070 6030 -144 2540 271 63 27 chr12 63744943 63746133 -80040322 + L1ME1 LINE L1 3178 4410 -1736 * 501 131 0 24 chr12 63746259 63746343 -80040112 - AluSq/x SINE Alu -184 128 47 983 271 101 19 chr12 63746354 63746918 -80039537 + L1ME1 LINE L1 4425 5034 -1112 1024 261 47 49 chr12 63746963 63747411 -80039044 + L1ME1 LINE L1 5716 6162 -4 188 135 27 0 chr12 63747670 63747707 -80038748 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 1395 216 28 40 chr12 63747710 63748062 -80038393 - MSTB1 LTR MaLR 0 432 85 220 139 23 0 chr12 63748136 63748179 -80038276 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2177 119 3 0 chr12 63750255 63750566 -80035889 - AluSx SINE Alu 0 312 1 1165 141 155 135 chr12 63750712 63751053 -80035402 - Tigger3(Golem) DNA MER2_type -1 3028 1 1710 153 38 7 chr12 63751451 63751739 -80034716 - AluSx SINE Alu -11 301 5 22 0 0 0 chr12 63751868 63751890 -80034565 + AT_rich Low_complexity Low_complexity 1 22 0 2343 173 24 20 chr12 63752534 63752990 -80033465 - MLT2C2 LTR ERVL -5 459 2 468 126 0 0 chr12 63752991 63753078 -80033377 + (TA)n Simple_repeat Simple_repeat 2 88 0 291 28 0 0 chr12 63753078 63753114 -80033341 + (TG)n Simple_repeat Simple_repeat 2 37 0 263 179 0 0 chr12 63753116 63753155 -80033300 - LTR51 LTR ERV1 -564 107 69 566 120 33 0 chr12 63753217 63753309 -80033146 + L1MA3 LINE L1 6211 6305 0 231 304 136 26 chr12 63753311 63753620 -80032835 + L1M4 LINE L1 4657 4999 -1147 1851 154 6 13 chr12 63754026 63754337 -80032118 - AluSx SINE Alu -3 309 1 1288 192 21 34 chr12 63754345 63754636 -80031819 - AluJo SINE Alu -25 287 1 24 0 0 0 chr12 63754642 63754666 -80031789 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr12 63754765 63754801 -80031654 + AT_rich Low_complexity Low_complexity 1 36 0 285 109 0 0 chr12 63755382 63755428 -80031027 + (CA)n Simple_repeat Simple_repeat 2 47 0 1104 355 154 8 chr12 63755497 63756229 -80030226 + L2 LINE L2 839 1677 -1637 229 324 0 14 chr12 63756619 63756693 -80029762 + L1ME LINE L1 377 449 -5621 1165 263 62 29 chr12 63756800 63757348 -80029107 + L1ME LINE L1 2622 3187 -2893 1107 202 25 13 chr12 63757426 63757644 -80028811 - MLT2B2 LTR ERVL -239 281 67 194 61 0 30 chr12 63757644 63757677 -80028778 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1570 170 54 0 chr12 63757679 63757824 -80028631 - AluJo SINE Alu -31 281 145 224 30 30 0 chr12 63757824 63757857 -80028598 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1570 170 54 0 chr12 63757857 63757970 -80028485 - AluJo SINE Alu -167 145 9 1107 202 25 13 chr12 63757970 63758005 -80028450 - MLT2B2 LTR ERVL -453 67 5 558 276 52 72 chr12 63758018 63758308 -80028147 + L1ME3A LINE L1 5678 5961 -209 2560 310 99 29 chr12 63758414 63759832 -80026623 + L2 LINE L2 1717 3235 -78 1175 118 6 0 chr12 63759842 63760003 -80026452 - AluSp SINE Alu -27 286 125 214 300 55 55 chr12 63760004 63760114 -80026341 + L2 LINE L2 3202 3311 -2 1687 215 27 11 chr12 63810788 63811155 -79975300 + MER39 LTR ERV1 310 682 -25 2386 222 3 16 chr12 63812447 63813019 -79973436 - L1MC3 LINE L1 -17 7768 7204 1975 148 0 3 chr12 63813097 63813394 -79973061 + AluSx SINE Alu 1 296 -16 285 282 29 10 chr12 63813418 63813521 -79972934 - MLT1F1 LTR MaLR -439 128 24 258 272 0 0 chr12 63813521 63813602 -79972853 - L1MC3 LINE L1 -700 7085 7005 1193 244 125 27 chr12 63813608 63814163 -79972292 - L1MCa LINE L1 -4576 1932 1166 180 0 0 0 chr12 63815507 63815527 -79970928 + (A)n Simple_repeat Simple_repeat 1 20 0 240 324 63 0 chr12 63817113 63817224 -79969231 - MER20B DNA MER1_type -619 164 47 324 138 0 0 chr12 63817344 63817397 -79969058 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2194 80 3 6 chr12 63817397 63817709 -79968746 - AluY SINE Alu 0 311 1 4938 139 34 17 chr12 63817716 63818581 -79967874 - L1PA13 LINE L1 0 6163 5285 776 223 70 37 chr12 63818584 63818857 -79967598 - HAL1 LINE L1 -6 2501 2220 1016 202 20 8 chr12 63818875 63819123 -79967332 - L1PA13 LINE L1 -838 5308 5058 223 286 0 0 chr12 63819286 63819349 -79967106 - MIR SINE MIR -16 246 184 4015 192 128 20 chr12 63819825 63821182 -79965273 - MER52A LTR ERV1 0 1755 17 21 57 0 0 chr12 63822247 63822282 -79964173 + AT_rich Low_complexity Low_complexity 1 35 0 399 333 48 0 chr12 63822457 63822604 -79963851 - MIR SINE MIR 0 262 109 280 281 24 0 chr12 63823126 63823208 -79963247 - MLT1E LTR MaLR -4 589 506 1313 158 33 97 chr12 63823313 63823675 -79962780 + L1MC3 LINE L1 6747 7085 -700 299 289 0 22 chr12 63823675 63823765 -79962690 + MLT1F1 LTR MaLR 24 111 -456 1158 130 9 60 chr12 63823766 63823981 -79962474 + AluSg/x SINE Alu 104 307 -5 6603 160 57 34 chr12 63823987 63825315 -79961140 + Tigger1 DNA MER2_type 1061 2418 0 903 253 18 47 chr12 63826258 63826598 -79959857 - L1MA9 LINE L1 -39 6273 5944 11595 194 19 11 chr12 63826609 63827522 -79958933 + L1MA1 LINE L1 2788 3692 -2610 180 0 0 0 chr12 63827522 63827542 -79958913 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 11595 194 19 11 chr12 63827542 63830115 -79956340 + L1MA1 LINE L1 3692 6302 0 13502 184 27 16 chr12 63830826 63831190 -79955265 - L1PB1 LINE L1 -2 6865 6506 198 0 0 0 chr12 63831190 63831212 -79955243 + (TG)n Simple_repeat Simple_repeat 2 23 0 13502 184 27 16 chr12 63831212 63833302 -79953153 - L1PB1 LINE L1 -361 6506 4440 2180 136 0 0 chr12 63833302 63833610 -79952845 - AluSq SINE Alu -5 308 1 13502 184 27 16 chr12 63833610 63837134 -79949321 - L1PB1 LINE L1 -2427 4440 636 1150 161 0 0 chr12 63837137 63837336 -79949119 - L1PB1 LINE L1 -6664 199 1 57 0 0 0 chr12 63837516 63837573 -79948882 + AT_rich Low_complexity Low_complexity 1 57 0 377 294 14 27 chr12 63837577 63837723 -79948732 - L2 LINE L2 -2 3311 3168 23 54 0 0 chr12 63839046 63839083 -79947372 + AT_rich Low_complexity Low_complexity 1 37 0 545 232 132 37 chr12 63839276 63839548 -79946907 + LTR37A LTR ERV1 78 375 -51 2018 103 6 60 chr12 63840479 63840798 -79945657 + AluSg SINE Alu 1 302 -8 2319 103 0 19 chr12 63842233 63842552 -79943903 + AluSq SINE Alu 1 313 0 1960 201 25 35 chr12 63843140 63843622 -79942833 - L1MA10 LINE L1 0 6334 5858 * 2020 205 63 39 chr12 63843609 63844146 -79942309 + L1MA10 LINE L1 5341 5890 -278 1151 180 31 20 chr12 63844230 63844524 -79941931 - L1MA9 LINE L1 -9 6303 6007 7445 33 3 0 chr12 63844524 63845421 -79941034 - L1PA3 LINE L1 -1 6154 5255 5378 43 1 3 chr12 63845402 63846073 -79940382 + L1PA3 LINE L1 4575 5244 -902 * 862 186 35 44 chr12 63846059 63846285 -79940170 - L1MA9 LINE L1 -296 6016 5793 * 1312 174 35 3 chr12 63846282 63846617 -79939838 - L1MA9 LINE L1 -259 5909 5625 * 4850 187 7 15 chr12 63846611 63847567 -79938888 + L1PA14 LINE L1 3394 4342 -1804 2283 117 20 3 chr12 63847567 63847917 -79938538 + THE1C LTR MaLR 1 356 -19 4887 156 26 5 chr12 63847920 63848495 -79937960 + L1PA14 LINE L1 4334 4895 -1266 1151 194 148 28 chr12 63848495 63848820 -79937635 - THE1B LTR MaLR 0 364 1 4887 156 26 5 chr12 63848820 63850049 -79936406 + L1PA14 LINE L1 4895 6143 -18 6182 126 15 9 chr12 63850198 63851176 -79935279 + L1MA2 LINE L1 5321 6304 0 3359 169 66 2 chr12 63851192 63851826 -79934629 + HSMAR2 DNA Mariner 628 1302 0 252 0 0 0 chr12 63852053 63852081 -79934374 + (GA)n Simple_repeat Simple_repeat 2 29 0 251 248 50 30 chr12 63853011 63853112 -79933343 - HERVL LTR ERVL -1614 4040 3938 719 222 26 31 chr12 63853870 63854064 -79932391 - L1MA9 LINE L1 -38 6274 6082 927 169 34 6 chr12 63854086 63854263 -79932192 - MER2 DNA MER2_type -13 332 151 519 213 8 47 chr12 63854275 63854402 -79932053 + L1M2 LINE L1 5624 5745 -567 1415 235 17 20 chr12 63854439 63854784 -79931671 + L1MC3 LINE L1 7244 7587 -198 25 0 0 0 chr12 63855956 63855981 -79930474 + AT_rich Low_complexity Low_complexity 1 25 0 1792 104 4 4 chr12 63856401 63856652 -79929803 + AluSp SINE Alu 47 297 -16 405 0 0 0 chr12 63856668 63856713 -79929742 + (TG)n Simple_repeat Simple_repeat 2 46 0 612 222 21 28 chr12 63857588 63857732 -79928723 + MIR SINE MIR 21 163 -99 36 94 0 0 chr12 63859330 63859436 -79927019 + AT_rich Low_complexity Low_complexity 1 106 0 28 48 0 0 chr12 63859535 63859577 -79926878 + AT_rich Low_complexity Low_complexity 1 42 0 1283 168 40 20 chr12 63861359 63861609 -79924846 - AluJo SINE Alu -24 288 34 22 35 0 0 chr12 63861675 63861704 -79924751 + AT_rich Low_complexity Low_complexity 1 29 0 358 333 37 65 chr12 63862024 63862348 -79924107 + L2 LINE L2 2986 3300 -13 273 57 0 0 chr12 63862934 63862969 -79923486 + (TG)n Simple_repeat Simple_repeat 2 36 0 29 60 0 0 chr12 63863191 63863241 -79923214 + AT_rich Low_complexity Low_complexity 1 50 0 317 248 90 8 chr12 63863721 63863854 -79922601 - MER53 DNA DNA -24 165 22 300 53 0 0 chr12 63864272 63864310 -79922145 + (A)n Simple_repeat Simple_repeat 1 38 0 233 257 14 0 chr12 63864588 63864658 -79921797 - L1ME LINE L1 -5956 114 44 365 295 97 42 chr12 63864699 63865502 -79920953 - L1MEc LINE L1 -3180 3035 2189 21 0 0 0 chr12 63865765 63865786 -79920669 + AT_rich Low_complexity Low_complexity 1 21 0 367 330 72 14 chr12 63866026 63866247 -79920208 - L1MEc LINE L1 -4810 1586 1353 681 326 44 16 chr12 63866490 63866926 -79919529 + L1ME3A LINE L1 4485 4932 -1214 1007 237 80 25 chr12 63866927 63867272 -79919183 - MSTD LTR MaLR 0 396 1 189 132 0 0 chr12 63867368 63867406 -79919049 + (A)n Simple_repeat Simple_repeat 1 38 0 633 293 45 9 chr12 63867409 63867715 -79918740 + L1ME3A LINE L1 5055 5375 -771 568 224 0 0 chr12 63867715 63867831 -79918624 + L1PB4 LINE L1 6035 6150 -6 633 293 45 9 chr12 63867831 63867855 -79918600 + L1ME3A LINE L1 5375 5397 -749 772 279 87 49 chr12 63867877 63868034 -79918421 + L1ME3A LINE L1 5489 5639 -531 1905 175 14 20 chr12 63868034 63868383 -79918072 + MER7A DNA MER2_type 2 346 0 772 279 87 49 chr12 63868383 63868500 -79917955 + L1ME3A LINE L1 5639 5750 -420 1441 206 39 12 chr12 63868500 63868830 -79917625 - MER44D DNA MER2_type 0 609 1 772 279 87 49 chr12 63868830 63869062 -79917393 + L1ME3A LINE L1 5750 6015 -155 24 77 0 0 chr12 63869885 63869937 -79916518 + AT_rich Low_complexity Low_complexity 1 52 0 32 67 0 0 chr12 63870096 63870156 -79916299 + AT_rich Low_complexity Low_complexity 1 60 0 510 67 13 0 chr12 63870184 63870259 -79916196 + L1P LINE L1 2304 2379 -3767 183 80 0 0 chr12 63871495 63871520 -79914935 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 63871821 63871849 -79914606 + AT_rich Low_complexity Low_complexity 1 28 0 3584 216 52 9 chr12 63872188 63873073 -79913382 - L1MC3 LINE L1 -8 7777 6855 202 229 98 49 chr12 63874201 63874262 -79912193 - L2 LINE L2 -19 3253 3190 380 289 189 37 chr12 63874326 63874516 -79911939 + MIR SINE MIR 5 223 -39 35 24 0 0 chr12 63875383 63875425 -79911030 + AT_rich Low_complexity Low_complexity 1 42 0 338 367 58 25 chr12 63875736 63875976 -79910479 - L2 LINE L2 -607 2707 2460 252 100 0 0 chr12 63878126 63878166 -79908289 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 115 0 0 chr12 63878595 63878708 -79907747 + AT_rich Low_complexity Low_complexity 1 113 0 419 266 6 0 chr12 63878829 63879002 -79907453 + (TA)n Simple_repeat Simple_repeat 1 174 0 1406 317 47 18 chr12 63879702 63880213 -79906242 - MLT1H1 LTR MaLR 0 555 30 578 225 45 6 chr12 63880550 63880728 -79905727 - Charlie5 DNA MER1_type 0 2621 2437 4267 220 22 42 chr12 63880732 63881998 -79904457 - L1 LINE L1 -823 5323 4083 4161 242 84 31 chr12 63881974 63883473 -79902982 - L1PBb LINE L1 -3891 2971 1349 * 901 283 18 25 chr12 63883463 63883791 -79902664 - L1PBa LINE L1 -5290 1572 1276 * 631 307 97 77 chr12 63884005 63885348 -79901107 - L1PA15-16 LINE L1 -5298 1564 3 965 248 40 46 chr12 63885649 63886202 -79900253 + MLT1E1 LTR MaLR 1 596 -58 785 320 54 57 chr12 63886406 63886866 -79899589 + L2 LINE L2 2507 2965 -349 189 276 92 31 chr12 63886968 63887066 -79899389 + L2 LINE L2 3030 3133 -180 2827 102 33 2 chr12 63887114 63887508 -79898947 + MLT2A2 LTR ERVL 1 406 -47 366 286 0 0 chr12 63887509 63887600 -79898855 + L1MC4 LINE L1 6613 6703 -1339 385 109 0 0 chr12 63887621 63887676 -79898779 + MLT2A1 LTR ERVL 390 444 0 476 274 26 0 chr12 63887683 63887796 -79898659 + L2 LINE L2 3190 3305 -8 25 65 0 0 chr12 63889290 63889336 -79897119 + AT_rich Low_complexity Low_complexity 1 46 0 232 254 32 71 chr12 63892667 63892793 -79893662 + MER103 DNA DNA 4 124 -42 355 297 90 71 chr12 63893190 63893513 -79892942 - MLT1J LTR MaLR -8 503 175 2143 134 0 0 chr12 63893630 63893937 -79892518 + AluSx SINE Alu 1 307 -5 312 244 9 87 chr12 63893989 63894104 -79892351 + MER21B LTR ERV1 1 106 -757 2533 227 89 42 chr12 63894258 63894941 -79891514 + MER21B LTR ERV1 95 809 -54 656 292 91 16 chr12 63895064 63895307 -79891148 - MIR SINE MIR 0 262 2 2250 73 0 20 chr12 63896094 63896397 -79890058 + AluY SINE Alu 3 299 -12 962 246 28 62 chr12 63897520 63897907 -79888548 - LTR37B LTR ERV1 -94 374 1 21 57 0 0 chr12 63898226 63898261 -79888194 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr12 63898881 63898910 -79887545 + AT_rich Low_complexity Low_complexity 1 29 0 808 214 103 42 chr12 63899041 63899303 -79887152 - MER57A LTR ERV1 -1 402 125 2600 84 109 0 chr12 63899322 63899726 -79886729 - LTR7 LTR ERV1 -2 448 1 2441 90 48 13 chr12 63899726 63900105 -79886350 - HERVH LTR ERV1 0 7713 7322 1210 139 43 30 chr12 63900073 63900303 -79886152 - HERVH LTR ERV1 -1884 5829 5597 * 8355 104 5 4 chr12 63900300 63902373 -79884082 - HERVH LTR ERV1 -1818 5273 3140 * 18964 92 47 18 chr12 63902352 63905263 -79881192 - HERVH LTR ERV1 -4718 2995 1 2670 74 109 0 chr12 63905265 63905668 -79880787 - LTR7 LTR ERV1 -2 448 2 234 275 14 0 chr12 63905702 63905771 -79880684 - MER57A LTR ERV1 -292 111 42 21 0 0 0 chr12 63906167 63906188 -79880267 + AT_rich Low_complexity Low_complexity 1 21 0 2328 75 0 3 chr12 63906610 63906902 -79879553 + AluY SINE Alu 1 291 -20 786 204 13 70 chr12 63907037 63907267 -79879188 + MER20 DNA MER1_type 2 218 -1 1859 149 67 14 chr12 63908111 63908467 -79877988 + THE1C LTR MaLR 1 375 0 256 370 0 0 chr12 63908891 63908983 -79877472 + L1MC/D LINE L1 5506 5597 -2211 339 0 0 0 chr12 63909035 63909079 -79877376 + L1PA3 LINE L1 6112 6155 0 29 28 0 0 chr12 63909147 63909183 -79877272 + AT_rich Low_complexity Low_complexity 1 36 0 697 163 8 8 chr12 63909646 63909804 -79876651 - FLAM_C SINE Alu 0 162 5 2706 134 2 2 chr12 63909865 63910291 -79876164 - L1P4 LINE L1 -392 5769 5344 770 131 0 0 chr12 63910300 63910422 -79876033 - L1P4 LINE L1 -886 5260 5139 * 1294 133 3 0 chr12 63910417 63910727 -79875728 + L1PA14 LINE L1 5748 6161 0 304 267 16 86 chr12 63910757 63910944 -79875511 - L2 LINE L2 -138 3175 3002 281 246 31 0 chr12 63910988 63911053 -79875402 + MLT1D LTR MaLR 22 88 -417 529 177 8 8 chr12 63911055 63911179 -79875276 + GA-rich Low_complexity Low_complexity 2 125 0 1271 273 53 23 chr12 63911210 63911609 -79874846 + MLT1D LTR MaLR 95 505 0 1702 256 67 29 chr12 63911638 63912217 -79874238 - L2 LINE L2 -926 2388 1788 202 387 34 76 chr12 63912640 63912759 -79873696 + L2 LINE L2 3154 3267 -5 2514 29 7 3 chr12 63912786 63913092 -79873363 + AluY SINE Alu 1 307 -4 190 283 42 67 chr12 63913299 63913419 -79873036 - L2 LINE L2 -50 3263 3147 193 228 35 0 chr12 63913594 63913651 -79872804 - L2 LINE L2 -2190 1124 1066 201 354 15 46 chr12 63914860 63915055 -79871400 + MIR SINE MIR 74 262 0 234 91 0 0 chr12 63915842 63915875 -79870580 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 241 200 36 0 chr12 63915880 63915935 -79870520 + GA-rich Low_complexity Low_complexity 2 58 0 976 103 48 9 chr12 63916084 63916325 -79870130 + LTR54B LTR ERV1 1 279 -219 537 167 79 0 chr12 63916341 63916467 -79869988 + MER96B DNA MER1_type? 91 226 -191 234 175 159 32 chr12 63916491 63916554 -79869901 - LTR67 LTR ERVL -37 520 450 1877 170 27 76 chr12 63917183 63917770 -79868685 - MER39 LTR ERV1 0 707 1 302 317 94 17 chr12 63917926 63918106 -79868349 + L1M4b LINE L1 10 203 -6656 239 283 0 53 chr12 63918564 63918677 -79867778 + L1M4b LINE L1 1239 1345 -5602 890 249 114 43 chr12 63918795 63919261 -79867194 + L1M4b LINE L1 1349 1847 -5008 322 122 0 204 chr12 63919405 63919503 -79866952 + MADE1 DNA Mariner 2 79 -1 273 359 60 28 chr12 63919844 63920092 -79866363 + L2 LINE L2 2560 2815 -499 26241 53 8 8 chr12 63920117 63924324 -79862131 - L1PA5 LINE L1 -4 6150 1947 194 295 168 40 chr12 63924332 63924481 -79861974 + L2 LINE L2 2858 3025 -247 21 0 0 0 chr12 63924775 63924796 -79861659 + AT_rich Low_complexity Low_complexity 1 21 0 257 206 68 14 chr12 63924928 63925001 -79861454 - MLT1L LTR MaLR -536 79 3 256 359 0 0 chr12 63925038 63925116 -79861339 + L2 LINE L2 3136 3213 -59 653 197 61 105 chr12 63925222 63925450 -79861005 + MER20 DNA MER1_type 1 218 -1 947 273 137 22 chr12 63926074 63926484 -79859971 - MLT1D LTR MaLR 0 505 49 1640 142 7 15 chr12 63926737 63927011 -79859444 - AluSx SINE Alu -6 306 35 2689 75 95 5 chr12 63927320 63927731 -79858724 - LTR7 LTR ERV1 -2 448 1 26 30 0 0 chr12 63927781 63927814 -79858641 + AT_rich Low_complexity Low_complexity 1 33 0 269 233 14 0 chr12 63928261 63928334 -79858121 + (TA)n Simple_repeat Simple_repeat 2 75 0 2357 166 73 45 chr12 63929513 63930063 -79856392 + MER34B LTR ERV1 1 565 0 671 260 49 79 chr12 63930187 63930510 -79855945 - MER110A LTR ERV1 0 491 197 3364 166 84 8 chr12 63930510 63931179 -79855276 - MER72 LTR ERV1 0 722 3 671 260 49 79 chr12 63931179 63931233 -79855222 - MER110A LTR ERV1 -294 197 143 5551 116 16 13 chr12 63931311 63932205 -79854250 - L1PB2 LINE L1 -2 6149 5254 3818 151 7 19 chr12 63932280 63932582 -79853873 - L1MA8 LINE L1 -331 5960 5656 1505 217 27 0 chr12 63932582 63932877 -79853578 - AluJb SINE Alu -9 303 1 3818 151 7 19 chr12 63932877 63933335 -79853120 - L1MA8 LINE L1 -635 5656 5212 1491 176 19 6 chr12 63933373 63933685 -79852770 + L1 LINE L1 4896 5211 -935 217 167 33 33 chr12 63933700 63933741 -79852714 + T-rich Low_complexity Low_complexity 5 48 -16 2525 118 0 16 chr12 63933741 63934122 -79852333 - THE1C LTR MaLR 0 375 1 217 167 33 33 chr12 63934122 63934140 -79852315 + T-rich Low_complexity Low_complexity 47 64 0 2146 130 0 0 chr12 63934357 63934658 -79851797 - AluSg SINE Alu -9 301 1 1683 124 65 24 chr12 63934780 63935070 -79851385 + MSTA LTR MaLR 1 302 -126 692 256 62 9 chr12 63935760 63935999 -79850456 - L1MC4 LINE L1 -1167 6618 6388 * 1464 266 33 43 chr12 63935998 63936668 -79849787 - L1M4 LINE L1 -1074 5072 4410 690 264 33 40 chr12 63936708 63937011 -79849444 - L1M4 LINE L1 -1840 4306 4006 741 236 26 15 chr12 63937042 63937237 -79849218 - MLT1C LTR MaLR 0 467 271 605 242 22 140 chr12 63937375 63937731 -79848724 - LTR41 LTR ERVL -429 344 31 777 244 6 0 chr12 63937764 63937928 -79848527 - FRAM SINE Alu -17 159 1 255 326 21 11 chr12 63938697 63938792 -79847663 - MIR3 SINE MIR -1 207 112 316 282 76 28 chr12 63938883 63939107 -79847348 - MLT1J2 LTR MaLR -27 419 188 193 128 43 0 chr12 63939190 63939237 -79847218 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 321 95 22 chr12 63939801 63939945 -79846510 - MIR SINE MIR -39 169 19 187 333 73 21 chr12 63939991 63940087 -79846368 - MIR3 SINE MIR -17 191 91 622 90 10 9 chr12 63941995 63942093 -79844362 - THE1C LTR MaLR 0 375 273 216 0 0 0 chr12 63942640 63942664 -79843791 + (T)n Simple_repeat Simple_repeat 1 24 0 488 248 66 0 chr12 63942666 63942787 -79843668 - FLAM_A SINE Alu -4 129 1 22 35 0 0 chr12 63943863 63943892 -79842563 + AT_rich Low_complexity Low_complexity 1 29 0 2094 114 0 10 chr12 63944233 63944532 -79841923 + AluSg SINE Alu 1 296 -14 275 157 14 0 chr12 63944605 63944675 -79841780 + (TA)n Simple_repeat Simple_repeat 1 71 0 260 319 198 0 chr12 63944708 63944824 -79841631 + MER5A DNA MER1_type 44 182 -7 365 257 92 18 chr12 63944844 63944953 -79841502 + MER5B DNA MER1_type 62 178 0 180 245 0 19 chr12 63945793 63945846 -79840609 - MER5C DNA MER1_type -234 90 39 191 338 56 19 chr12 63947673 63947803 -79838652 + MIR SINE MIR 38 169 -66 2077 162 13 16 chr12 63947858 63948234 -79838221 - THE1C LTR MaLR 0 375 1 8920 62 4 2 chr12 63948403 63950344 -79836111 - L1PA4 LINE L1 0 6155 4213 307 211 21 21 chr12 63950453 63950548 -79835907 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 10604 208 34 6 chr12 63950550 63953675 -79832780 - L1P5 LINE L1 -359 6508 3294 901 234 35 45 chr12 63953677 63953967 -79832488 + pTR5 LTR ERV1 742 1028 -1410 4650 126 94 3 chr12 63954162 63954919 -79831536 + LTR12 LTR ERV1 1 826 0 5557 176 26 11 chr12 63954919 63956346 -79830109 - L1P5 LINE L1 -3571 3291 1783 1987 282 65 43 chr12 63956347 63957385 -79829070 - L1M4 LINE L1 -1391 4755 3695 729 226 7 13 chr12 63957385 63957536 -79828919 - MLT1C LTR MaLR 0 467 318 510 254 32 0 chr12 63957536 63957662 -79828793 + MLT1A2 LTR MaLR 3 132 -242 712 189 0 0 chr12 63957676 63957803 -79828652 + MLT1D LTR MaLR 379 505 0 2611 264 77 16 chr12 63957837 63959007 -79827448 - L1MDb LINE L1 -4465 1941 722 864 73 8 47 chr12 63959727 63959966 -79826489 + (TTC)n Simple_repeat Simple_repeat 1 229 0 789 145 0 38 chr12 63959979 63960165 -79826290 + (TTC)n Simple_repeat Simple_repeat 2 180 0 11633 38 4 2 chr12 63960265 63962256 -79824199 - L1PA4 LINE L1 -209 5946 3951 6304 14 1 1 chr12 63962253 63962981 -79823474 - L1HS LINE L1 0 6155 5428 * 17785 39 1 0 chr12 63962965 63965199 -79821256 - L1PA4 LINE L1 -2179 3967 1731 1761 155 23 7 chr12 63965204 63965507 -79820948 - AluSx SINE Alu -4 308 1 31 26 0 0 chr12 63966045 63966083 -79820372 + AT_rich Low_complexity Low_complexity 1 38 0 26 93 0 0 chr12 63966289 63966364 -79820091 + AT_rich Low_complexity Low_complexity 1 75 0 222 176 0 0 chr12 63966692 63966743 -79819712 + (TA)n Simple_repeat Simple_repeat 1 51 0 26 50 0 0 chr12 63966830 63966870 -79819585 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr12 63968042 63968068 -79818387 + AT_rich Low_complexity Low_complexity 1 26 0 184 359 31 0 chr12 63968934 63968998 -79817457 + MIR SINE MIR 175 240 -22 1841 141 4 4 chr12 63969232 63969508 -79816947 + AluSx SINE Alu 1 276 -36 1570 196 7 17 chr12 63969837 63970128 -79816327 - AluJo SINE Alu -24 288 1 225 140 20 20 chr12 63971255 63971305 -79815150 + A-rich Low_complexity Low_complexity 3 52 0 22 35 0 0 chr12 63972054 63972083 -79814372 + AT_rich Low_complexity Low_complexity 1 29 0 300 184 13 40 chr12 63972154 63972230 -79814225 + L1MC4 LINE L1 6630 6703 -1339 203 239 22 0 chr12 63972230 63972276 -79814179 + (TA)n Simple_repeat Simple_repeat 1 47 0 403 313 116 31 chr12 63972278 63972572 -79813883 + HAL1b LINE L1 61 379 -969 344 253 188 0 chr12 63972590 63972744 -79813711 + L1MC5 LINE L1 6643 6825 -1136 7437 37 2 0 chr12 63973042 63974284 -79812171 - L1PA4 LINE L1 -1 6154 4911 21 0 0 0 chr12 63975127 63975148 -79811307 + AT_rich Low_complexity Low_complexity 1 21 0 2606 230 85 11 chr12 63975155 63975956 -79810499 - Charlie1 DNA MER1_type 0 2761 1902 1314 210 4 26 chr12 63975956 63976228 -79810227 + AluJb SINE Alu 21 286 -26 330 242 21 11 chr12 63976255 63976350 -79810105 - Charlie1 DNA MER1_type -845 1916 1821 1471 242 15 27 chr12 63976962 63977344 -79809111 - L1MD2 LINE L1 -2 6357 5979 1257 232 48 40 chr12 63977344 63977698 -79808757 + MLT2D LTR ERVL 1 357 -57 5801 155 17 19 chr12 63977707 63978732 -79807723 - HSMAR2 DNA Mariner -2 1300 279 2317 131 3 11 chr12 63978741 63979114 -79807341 - L1PB1 LINE L1 0 6151 5782 232 256 22 22 chr12 63979135 63979225 -79807230 + L1MC4 LINE L1 6614 6703 -1339 407 244 9 0 chr12 63979225 63979340 -79807115 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 228 235 0 82 chr12 63979344 63979442 -79807013 + L1MC4 LINE L1 6614 6703 -1339 243 218 0 0 chr12 63979444 63979499 -79806956 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 835 167 4 15 chr12 63979697 63979961 -79806494 + CT-rich Low_complexity Low_complexity 1 261 0 330 293 95 58 chr12 63979966 63980208 -79806247 - L1MDa LINE L1 -6256 284 34 25 0 0 0 chr12 63980237 63980262 -79806193 + AT_rich Low_complexity Low_complexity 1 25 0 1542 238 28 16 chr12 63980303 63980690 -79805765 + MSTD LTR MaLR 5 396 0 27 29 0 0 chr12 63980697 63980731 -79805724 + AT_rich Low_complexity Low_complexity 1 34 0 3420 104 14 8 chr12 63981077 63981585 -79804870 - MER9 LTR ERVK 0 511 1 22 56 0 0 chr12 63982504 63982540 -79803915 + AT_rich Low_complexity Low_complexity 1 36 0 436 320 11 17 chr12 63983997 63984175 -79802280 - MER5B DNA MER1_type -1 177 1 26 74 0 0 chr12 63984568 63984622 -79801833 + AT_rich Low_complexity Low_complexity 1 54 0 183 350 42 8 chr12 63985111 63985231 -79801224 + L2 LINE L2 3020 3143 -170 1158 241 94 23 chr12 63985231 63985667 -79800788 - MLT1C LTR MaLR 0 467 1 289 307 47 39 chr12 63985667 63985794 -79800661 + L2 LINE L2 3139 3266 -47 21 36 0 0 chr12 63986715 63986743 -79799712 + AT_rich Low_complexity Low_complexity 1 28 0 1373 242 22 69 chr12 63986935 63987397 -79799058 - MLT1F LTR MaLR -102 440 1 251 271 57 0 chr12 63987408 63987478 -79798977 - MER20 DNA MER1_type -27 192 119 1903 170 0 0 chr12 63987479 63987773 -79798682 + AluSx SINE Alu 1 294 -18 539 248 0 50 chr12 63989072 63989213 -79797242 - MER63 DNA MER1_type -302 760 1 22 0 0 0 chr12 63990611 63990633 -79795822 + AT_rich Low_complexity Low_complexity 1 22 0 192 179 0 0 chr12 63991284 63991323 -79795132 + (CA)n Simple_repeat Simple_repeat 2 40 0 1960 148 111 8 chr12 63991326 63991712 -79794743 - MSTA LTR MaLR -2 426 1 209 194 0 0 chr12 63991914 63991950 -79794505 + (CA)n Simple_repeat Simple_repeat 1 36 0 466 292 56 19 chr12 63992285 63992446 -79794009 + MIR SINE MIR 9 175 -87 1928 83 0 0 chr12 63993139 63993403 -79793052 - L1PA3 LINE L1 -158 5997 5734 627 279 39 0 chr12 63993405 63993584 -79792871 - MLT1D LTR MaLR -317 188 3 521 259 30 20 chr12 63993595 63993796 -79792659 + L1M4 LINE L1 2559 2761 -3385 1973 58 4 0 chr12 63993797 63994055 -79792400 + L1P2 LINE L1 4 262 -5884 * 20559 65 20 0 chr12 63994053 63997133 -79789322 + L1P2 LINE L1 2641 5785 -370 264 30 0 0 chr12 63997767 63997800 -79788655 + (TA)n Simple_repeat Simple_repeat 1 33 0 266 225 22 0 chr12 63998363 63998452 -79788003 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 493 301 121 0 chr12 63998468 63998641 -79787814 + MER70A LTR ERVL 4 197 -275 460 306 106 30 chr12 63998962 63999087 -79787368 + MER70B LTR ERVL 209 356 -222 1368 232 5 63 chr12 63999087 63999470 -79786985 + MLT1A1 LTR MaLR 2 362 -3 460 306 106 30 chr12 63999470 63999543 -79786912 + MER70B LTR ERVL 356 422 -156 23 0 0 0 chr12 63999844 63999867 -79786588 + AT_rich Low_complexity Low_complexity 1 23 0 188 285 231 0 chr12 64000098 64000228 -79786227 - L2 LINE L2 0 3313 3154 1444 212 3 10 chr12 64001243 64001536 -79784919 + AluJo SINE Alu 3 293 -19 5235 32 3 3 chr12 64001598 64002225 -79784230 - L1PA3 LINE L1 0 6155 5529 30 27 0 0 chr12 64003902 64003939 -79782516 + AT_rich Low_complexity Low_complexity 1 37 0 269 180 16 16 chr12 64004558 64004619 -79781836 - L1ME3 LINE L1 -7 6155 6095 2154 160 3 6 chr12 64004623 64004961 -79781494 + MER1B DNA MER1_type 1 337 -2 245 243 14 0 chr12 64005196 64005266 -79781189 - L1M3a LINE L1 -5029 926 856 1403 169 12 0 chr12 64005268 64005516 -79780939 - L1PA15 LINE L1 -2 6163 5913 236 53 26 0 chr12 64005528 64005566 -79780889 + (CA)n Simple_repeat Simple_repeat 2 40 0 810 239 36 0 chr12 64005566 64005788 -79780667 + L1 LINE L1 4280 4509 -1637 21 0 0 0 chr12 64006220 64006241 -79780214 + AT_rich Low_complexity Low_complexity 1 21 0 1248 281 132 14 chr12 64006284 64006736 -79779719 - MER77 LTR ERV1 -4 601 128 206 329 13 13 chr12 64007153 64007229 -79779226 - L3b LINE CR1 -118 1465 1390 1985 170 81 2 chr12 64008533 64008928 -79777527 - MSTB LTR MaLR 0 426 1 636 222 19 3 chr12 64008929 64009140 -79777315 - MLT1A1 LTR MaLR 0 365 109 312 345 0 21 chr12 64009176 64009321 -79777134 + MIR SINE MIR 95 236 -26 1121 202 24 20 chr12 64009479 64009732 -79776723 + Tigger1 DNA MER2_type 2 255 -2163 513 43 14 0 chr12 64009741 64009810 -79776645 - L1PA3 LINE L1 -16 6139 6070 2288 113 0 0 chr12 64009910 64010219 -79776236 - AluSg SINE Alu -1 309 1 3154 166 37 95 chr12 64010220 64011103 -79775352 - L1 LINE L1 -777 5369 4538 1996 286 63 24 chr12 64011349 64012665 -79773790 - L1M4 LINE L1 -1302 4844 3478 21 36 0 0 chr12 64012668 64012696 -79773759 + AT_rich Low_complexity Low_complexity 1 28 0 1992 272 59 80 chr12 64012821 64014489 -79771966 - L1 LINE L1 -1755 4391 2757 4190 50 6 2 chr12 64014489 64015026 -79771429 - L1PA4 LINE L1 -1 6154 5616 5927 23 4 0 chr12 64015026 64015719 -79770736 + L1P LINE L1 3621 4316 -1830 10468 146 20 9 chr12 64015719 64017463 -79768992 + Tigger1 DNA MER2_type 232 1994 -424 4208 223 18 42 chr12 64017472 64018938 -79767517 - L1P LINE L1 -1286 4860 3506 364 189 0 0 chr12 64018941 64019015 -79767440 - L1P LINE L1 -2811 3335 3262 * 5326 177 14 5 chr12 64019010 64020299 -79766156 + L1PA15 LINE L1 4856 6152 -13 2286 169 33 2 chr12 64020303 64020723 -79765732 + Tigger1 DNA MER2_type 1986 2418 0 3206 40 0 0 chr12 64021018 64021417 -79765038 - L1P LINE L1 -3632 2514 2116 * 9214 45 1 174 chr12 64021416 64023109 -79763346 + L1P LINE L1 688 2086 -4060 622 277 51 31 chr12 64023944 64024478 -79761977 - L1MC5 LINE L1 -818 7075 6442 1161 186 98 47 chr12 64025020 64025323 -79761132 - AluJo SINE Alu 0 317 1 28 0 0 0 chr12 64026185 64026213 -79760242 + AT_rich Low_complexity Low_complexity 1 28 0 361 304 47 101 chr12 64027677 64027953 -79758502 - MIR SINE MIR 0 262 2 2577 228 40 10 chr12 64028806 64029575 -79756880 - L1 LINE L1 -3374 4191 3398 214 171 0 0 chr12 64029620 64029655 -79756800 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 2126 187 8 77 chr12 64030603 64031094 -79755361 - MER44D DNA MER2_type -93 512 1 30 45 0 0 chr12 64031129 64031173 -79755282 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr12 64031393 64031422 -79755033 + AT_rich Low_complexity Low_complexity 1 29 0 543 244 79 18 chr12 64031667 64031831 -79754624 + Tigger1 DNA MER2_type 3 176 -2242 * 595 164 134 0 chr12 64031803 64031937 -79754518 + Tigger1 DNA MER2_type 2202 2353 -65 192 170 45 9 chr12 64032389 64032501 -79753954 + (TA)n Simple_repeat Simple_repeat 2 117 0 25 31 0 0 chr12 64032508 64032540 -79753915 + AT_rich Low_complexity Low_complexity 1 32 0 40 79 0 0 chr12 64032555 64032644 -79753811 + AT_rich Low_complexity Low_complexity 1 89 0 185 81 0 27 chr12 64032878 64032915 -79753540 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 64033037 64033059 -79753396 + AT_rich Low_complexity Low_complexity 1 22 0 3448 242 67 42 chr12 64033210 64034832 -79751623 + L1MDb LINE L1 776 2415 -3991 828 236 63 43 chr12 64034920 64035335 -79751120 + L1MDb LINE L1 2391 2813 -3593 1499 252 112 30 chr12 64035335 64035618 -79750837 - MLT1D LTR MaLR 0 505 168 3319 48 7 0 chr12 64035618 64036036 -79750419 - L1PA3 LINE L1 -1 6154 5734 1499 252 112 30 chr12 64036036 64036217 -79750238 - MLT1D LTR MaLR -337 168 3 481 250 29 34 chr12 64036228 64036432 -79750023 + L1MDb LINE L1 2819 3021 -3385 2031 58 0 0 chr12 64036433 64036692 -79749763 + L1PA4 LINE L1 4 262 -5884 21918 41 0 0 chr12 64036692 64040196 -79746259 + L1PA4 LINE L1 2643 6155 0 2041 273 61 75 chr12 64040199 64041865 -79744590 + L1MDb LINE L1 3010 4651 -1755 21 36 0 0 chr12 64041990 64042018 -79744437 + AT_rich Low_complexity Low_complexity 1 28 0 1965 288 67 21 chr12 64042021 64043328 -79743127 + L1M4 LINE L1 3478 4844 -1302 4588 159 59 64 chr12 64043573 64044458 -79741997 + L1MA9 LINE L1 4798 5664 -908 2178 115 0 0 chr12 64044458 64044754 -79741701 + AluSg SINE Alu 1 296 -14 4588 159 59 64 chr12 64044754 64045659 -79740796 + L1MA9 LINE L1 5664 6572 0 22 70 0 0 chr12 64046860 64046903 -79739552 + AT_rich Low_complexity Low_complexity 1 43 0 185 408 92 0 chr12 64046923 64047043 -79739412 + L2 LINE L2 3134 3264 -8 26 50 0 0 chr12 64047139 64047179 -79739276 + AT_rich Low_complexity Low_complexity 1 40 0 3187 227 96 17 chr12 64047288 64048410 -79738045 - L1MA5 LINE L1 -2 7717 6503 1076 205 13 0 chr12 64048413 64048642 -79737813 + L1 LINE L1 4544 4775 -1371 6879 189 9 7 chr12 64048742 64050116 -79736339 - L1MA5 LINE L1 -1237 6328 4953 911 99 142 0 chr12 64050117 64050258 -79736197 - MSTA LTR MaLR 0 428 268 4289 214 32 24 chr12 64050269 64051240 -79735215 - L1MA5 LINE L1 -6572 993 15 215 243 0 14 chr12 64051658 64051732 -79734723 + (CATATA)n Simple_repeat Simple_repeat 1 73 0 243 259 74 0 chr12 64051757 64051838 -79734617 - L1MC4 LINE L1 -1339 6703 6617 229 270 0 0 chr12 64051838 64051912 -79734543 + LTR66 LTR ERVL 399 472 -138 24 32 0 0 chr12 64052182 64052213 -79734242 + AT_rich Low_complexity Low_complexity 1 31 0 261 312 151 15 chr12 64053161 64053360 -79733095 - L1ME LINE L1 -276 5894 5669 394 250 26 72 chr12 64053427 64053579 -79732876 + Charlie2 DNA MER1_type 73 217 -2565 226 255 10 20 chr12 64053674 64053776 -79732679 + T-rich Low_complexity Low_complexity 3 103 0 480 259 15 35 chr12 64053993 64054032 -79732423 + LTR37B LTR ERV1 275 313 -155 315 0 0 0 chr12 64054032 64054067 -79732388 + (TA)n Simple_repeat Simple_repeat 2 36 0 480 259 15 35 chr12 64054067 64054224 -79732231 + LTR37B LTR ERV1 313 467 -1 392 285 171 24 chr12 64054231 64054600 -79731855 - L1M4 LINE L1 -2887 3259 2837 26 0 0 0 chr12 64055669 64055695 -79730760 + AT_rich Low_complexity Low_complexity 1 26 0 337 327 58 43 chr12 64055875 64056202 -79730253 - L1ME LINE L1 -1351 4795 4464 232 231 77 51 chr12 64056231 64056387 -79730068 - L1 LINE L1 -1706 4440 4281 1597 192 12 59 chr12 64056530 64056937 -79729518 - MLT1B LTR MaLR -2 388 1 2534 55 0 3 chr12 64056975 64057282 -79729173 + AluY SINE Alu 1 306 -5 425 290 103 10 chr12 64057329 64057629 -79728826 - L1 LINE L1 -2169 3977 3650 363 312 78 13 chr12 64058148 64058302 -79728153 + L1M2 LINE L1 668 831 -6018 793 50 10 0 chr12 64058618 64058719 -79727736 - L1P LINE L1 -5508 638 537 532 122 12 0 chr12 64058712 64058794 -79727661 - L1P LINE L1 -6060 86 4 * 24 0 0 0 chr12 64058794 64058818 -79727637 + AT_rich Low_complexity Low_complexity 1 24 0 249 114 0 0 chr12 64058963 64058998 -79727457 + LTR50 LTR ERVL 1 35 -760 312 216 39 199 chr12 64059381 64059885 -79726570 + L1PBb LINE L1 668 1084 -5765 5191 229 47 10 chr12 64060074 64061436 -79725019 + L1PBb LINE L1 1050 2555 -4293 1185 204 0 17 chr12 64061439 64061670 -79724785 + AluJb SINE Alu 1 227 -85 6196 225 69 13 chr12 64061670 64063471 -79722984 - L1 LINE L1 -2044 5521 3620 3003 278 58 32 chr12 64063495 64063577 -79722878 - L1 LINE L1 -3933 3632 3554 994 68 0 0 chr12 64063577 64063710 -79722745 - L1PA4 LINE L1 -7 6148 6016 3003 278 58 32 chr12 64063710 64065223 -79721232 - L1 LINE L1 -4011 3554 1996 1533 303 73 34 chr12 64065259 64065945 -79720510 - L1 LINE L1 -6311 1178 466 203 167 0 0 chr12 64066712 64066748 -79719707 + T-rich Low_complexity Low_complexity 2 37 0 724 158 0 0 chr12 64066987 64067114 -79719341 - L1PA15 LINE L1 -7 6158 6032 512 336 88 17 chr12 64067532 64067709 -79718746 + MIR SINE MIR 7 207 -55 1616 183 37 48 chr12 64067709 64068086 -79718369 - THE1C LTR MaLR -2 373 1 512 336 88 17 chr12 64068086 64068146 -79718309 + MIR SINE MIR 207 261 -1 226 306 42 0 chr12 64068147 64068219 -79718236 - MIR SINE MIR -15 247 173 817 241 53 0 chr12 64068652 64068859 -79717596 - MER58A DNA MER1_type 0 224 7 201 307 23 57 chr12 64069033 64069121 -79717334 - MIR SINE MIR -112 150 66 30 45 0 0 chr12 64069445 64069489 -79716966 + AT_rich Low_complexity Low_complexity 1 44 0 36 0 0 55 chr12 64071018 64071073 -79715382 + AT_rich Low_complexity Low_complexity 1 52 0 235 279 0 0 chr12 64071290 64071358 -79715097 + MIR SINE MIR 84 151 -111 207 0 0 0 chr12 64071397 64071420 -79715035 + (A)n Simple_repeat Simple_repeat 1 23 0 2823 15 24 0 chr12 64073175 64073513 -79712942 - L1P LINE L1 -1625 4521 4176 1118 218 89 22 chr12 64073609 64074222 -79712233 + L1MC2 LINE L1 4907 5557 -743 357 109 18 0 chr12 64074244 64074299 -79712156 + LTR43 LTR ERV1 1 56 -546 * 2129 149 14 0 chr12 64074297 64074646 -79711809 + LTR43 LTR ERV1 249 602 0 3005 219 39 18 chr12 64074647 64075409 -79711046 + L1MC2 LINE L1 5561 6338 -6 2039 168 27 14 chr12 64075551 64075921 -79710534 + THE1C LTR MaLR 1 375 0 6612 148 71 10 chr12 64075922 64077103 -79709352 + THE1C-int LTR MaLR 2 1254 -326 3381 134 35 24 chr12 64077217 64077793 -79708662 + THE1C-int LTR MaLR 993 1574 -6 2103 121 20 73 chr12 64077798 64078194 -79708261 + THE1C LTR MaLR 1 375 0 535 194 7 72 chr12 64078371 64078510 -79707945 + FLAM_C SINE Alu 1 130 -3 2150 100 13 13 chr12 64078967 64079276 -79707179 - AluSp SINE Alu 0 313 5 8857 185 33 19 chr12 64079292 64081004 -79705451 - L1MA4A LINE L1 -7 6296 4514 2289 103 0 0 chr12 64081004 64081305 -79705150 - AluY SINE Alu -8 303 3 8857 185 33 19 chr12 64081305 64082702 -79703753 - L1MA4A LINE L1 -1789 4514 3139 1650 197 70 32 chr12 64082702 64083240 -79703215 + MLT2A2 LTR ERVL 1 554 0 14214 100 9 0 chr12 64083249 64085191 -79701264 + HERVL-A2 LTR ERVL 3415 5374 -280 5038 131 10 8 chr12 64085292 64086071 -79700384 + HERVL-A2 LTR ERVL 4874 5654 0 1771 216 40 28 chr12 64086071 64086620 -79699835 + MLT2A2 LTR ERVL 1 554 0 1425 181 11 48 chr12 64086648 64086919 -79699536 - AluJb SINE Alu -24 288 28 883 179 56 4 chr12 64086928 64087162 -79699293 - L1MA4A LINE L1 -3007 3139 2894 466 210 25 17 chr12 64087228 64087347 -79699108 - L1 LINE L1 -1540 5308 5189 * 9691 228 38 72 chr12 64087341 64089860 -79696595 - L1 LINE L1 -3544 3304 927 399 21 0 0 chr12 64089860 64089908 -79696547 + (TG)n Simple_repeat Simple_repeat 2 49 0 9691 228 38 72 chr12 64089908 64090804 -79695651 - L1 LINE L1 -5921 927 3 303 28 0 0 chr12 64090892 64090928 -79695527 + (TG)n Simple_repeat Simple_repeat 2 37 0 283 284 48 29 chr12 64091589 64091797 -79694658 + HAL1b LINE L1 613 824 -524 326 295 54 71 chr12 64091852 64092147 -79694308 - L1M4 LINE L1 -1446 4700 4411 2089 262 74 48 chr12 64092364 64093934 -79692521 + L1M4 LINE L1 3109 4718 -1428 731 276 50 60 chr12 64093974 64094373 -79692082 + MLT2C1 LTR ERVL 2 396 -1 1319 287 90 40 chr12 64094374 64095049 -79691406 + ERVL-C1 LTR ERVL 1 709 -5055 326 289 89 17 chr12 64095087 64095267 -79691188 + ERVL-C1 LTR ERVL 819 1011 -4643 1622 161 41 24 chr12 64095267 64095387 -79691068 + MER4A LTR ERV1 1 117 -547 372 22 0 0 chr12 64095387 64095432 -79691023 + (CA)n Simple_repeat Simple_repeat 2 46 0 1622 161 41 24 chr12 64095432 64095829 -79690626 + MER4A LTR ERV1 117 663 -1 1049 244 30 26 chr12 64095838 64096207 -79690248 + ERVL-C1 LTR ERVL 1055 1458 -4306 11926 33 1 0 chr12 64096228 64097667 -79688788 - L1P LINE L1 -1324 4822 3382 21 0 0 0 chr12 64097767 64097788 -79688667 + AT_rich Low_complexity Low_complexity 1 21 0 752 267 160 32 chr12 64097825 64098263 -79688192 - L1ME LINE L1 -408 5758 5265 2096 141 35 22 chr12 64098284 64098654 -79687801 + THE1C LTR MaLR 1 375 0 6363 135 49 7 chr12 64098655 64099667 -79686788 + THE1C-int LTR MaLR 2 1056 -524 8185 43 0 0 chr12 64099768 64100807 -79685648 - L1P LINE L1 -2867 3279 2241 1504 188 124 0 chr12 64100851 64101149 -79685306 - LOR1a-int LTR ERV1 -4009 4111 3777 3015 154 13 2 chr12 64101438 64101964 -79684491 - LOR1a-int LTR ERV1 -4342 3778 3247 2322 173 13 5 chr12 64101959 64102352 -79684103 - LOR1a-int LTR ERV1 -7724 396 1 * 2919 145 16 12 chr12 64102352 64102843 -79683612 - LOR1a LTR ERV1 0 497 5 855 303 125 32 chr12 64102849 64103494 -79682961 + L2 LINE L2 1864 2638 -676 1891 143 34 0 chr12 64103496 64103822 -79682633 - AluSq SINE Alu 0 313 1 1093 90 0 0 chr12 64103822 64103955 -79682500 - AluSg SINE Alu -177 133 1 656 287 104 72 chr12 64103955 64104387 -79682068 + L2 LINE L2 2864 3309 -4 794 197 16 27 chr12 64106383 64106566 -79679889 + MER3 DNA MER1_type 1 181 -28 306 208 0 0 chr12 64106884 64106937 -79679518 + MLT2B1 LTR ERVL 399 451 -69 24 0 0 0 chr12 64107664 64107688 -79678767 + AT_rich Low_complexity Low_complexity 1 24 0 1963 215 68 28 chr12 64107788 64108286 -79678169 + MLT2B1 LTR ERVL 1 518 -2 21 82 0 0 chr12 64108445 64108494 -79677961 + AT_rich Low_complexity Low_complexity 1 49 0 255 370 7 32 chr12 64108550 64108704 -79677751 - L2 LINE L2 -12 3301 3152 1995 207 24 21 chr12 64108715 64109136 -79677319 - MSTB LTR MaLR -2 424 3 685 347 141 38 chr12 64109339 64110263 -79676192 - L2 LINE L2 -445 2869 1851 2041 53 0 12 chr12 64110314 64110561 -79675894 + AluY SINE Alu 17 260 -51 9659 50 3 2 chr12 64110660 64112656 -79673799 - L1PA4 LINE L1 -3 6152 4156 3754 42 0 2 chr12 64112656 64113111 -79673344 + L1PA5 LINE L1 5698 6153 -1 7044 157 10 2 chr12 64113111 64114743 -79671712 + HUERS-P3 LTR ERV1 6096 7841 -1078 21 36 0 0 chr12 64115364 64115392 -79671063 + AT_rich Low_complexity Low_complexity 1 28 0 256 267 0 0 chr12 64115676 64115751 -79670704 + A-rich Low_complexity Low_complexity 1 75 0 366 23 0 0 chr12 64116633 64116676 -79669779 + (CA)n Simple_repeat Simple_repeat 2 44 0 330 118 0 0 chr12 64117123 64117174 -79669281 + MADE1 DNA Mariner 30 80 0 293 278 61 96 chr12 64117537 64117735 -79668720 + L3 LINE CR1 845 1035 -542 7478 27 0 0 chr12 64118188 64119335 -79667120 - L1PA4 LINE L1 -3 6152 5000 1024 25 0 0 chr12 64119336 64119456 -79666999 + L1PA4 LINE L1 4873 4992 -1154 267 305 48 29 chr12 64119767 64119872 -79666583 - MIR SINE MIR -97 165 59 970 312 203 12 chr12 64120110 64120706 -79665749 + L2 LINE L2 39 748 -2566 3173 163 7 16 chr12 64120735 64121295 -79665160 - MER39B LTR ERV1 -6 647 93 7053 168 22 7 chr12 64121340 64122665 -79663790 - LTR49-int LTR ERV1 -490 5841 4497 5976 118 8 0 chr12 64122673 64124026 -79662429 + L1PA14 LINE L1 4795 6157 -4 363 83 83 0 chr12 64124067 64124127 -79662328 - LTR49-int LTR ERV1 -1826 4505 4441 2335 107 32 0 chr12 64124129 64124474 -79661981 - MER39B LTR ERV1 -297 356 1 192 200 20 160 chr12 64124474 64124529 -79661926 + L2 LINE L2 767 803 -2511 237 83 0 0 chr12 64124529 64124565 -79661890 + (CA)n Simple_repeat Simple_repeat 2 37 0 192 200 20 160 chr12 64124565 64124609 -79661846 + L2 LINE L2 803 852 -2462 480 330 178 13 chr12 64124709 64125024 -79661431 + L2 LINE L2 862 1228 -2086 743 295 114 0 chr12 64125069 64125384 -79661071 + L2 LINE L2 1522 1872 -1442 491 339 70 63 chr12 64125352 64125794 -79660661 + L2 LINE L2 2869 3313 0 * 1175 195 28 5 chr12 64125992 64126207 -79660248 + AluJb SINE Alu 3 222 -90 295 388 52 17 chr12 64126293 64126584 -79659871 + L1MEc LINE L1 133 433 -5963 26 0 0 0 chr12 64126618 64126644 -79659811 + AT_rich Low_complexity Low_complexity 1 26 0 331 316 75 44 chr12 64126918 64127038 -79659417 + L1MEc LINE L1 788 903 -5493 591 217 16 0 chr12 64127038 64127167 -79659288 + L1PB4 LINE L1 6019 6149 -7 331 316 75 44 chr12 64127167 64127861 -79658594 + L1MEc LINE L1 903 1638 -4758 212 0 36 0 chr12 64127861 64127889 -79658566 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 331 316 75 44 chr12 64127889 64128013 -79658442 + L1MEc LINE L1 1638 1757 -4639 256 258 244 0 chr12 64128189 64128398 -79658057 + L1MEc LINE L1 1978 2237 -4159 363 288 122 5 chr12 64128494 64128716 -79657739 + L1MEc LINE L1 2273 2520 -3695 1613 241 82 43 chr12 64128742 64129623 -79656832 + L1M4 LINE L1 4331 5245 -901 2101 140 30 24 chr12 64129625 64129997 -79656458 - THE1C LTR MaLR -1 374 1 1774 135 30 7 chr12 64129997 64130293 -79656162 - THE1C-int LTR MaLR 0 1580 1278 421 254 101 14 chr12 64130486 64130624 -79655831 + MIR SINE MIR 86 235 -27 526 294 32 23 chr12 64130763 64130938 -79655517 - MER63A DNA MER1_type -6 204 27 327 301 70 28 chr12 64131997 64132140 -79654315 + MIR SINE MIR 12 160 -102 353 145 56 4 chr12 64132437 64132558 -79653897 - MER53 DNA DNA -13 176 1 249 264 103 0 chr12 64132705 64132792 -79653663 + LTR16C LTR ERVL 377 472 -19 314 289 111 33 chr12 64133144 64133324 -79653131 - MIR SINE MIR -10 252 59 297 235 42 130 chr12 64133510 64133580 -79652875 + L1MEc LINE L1 2132 2207 -4189 830 94 0 8 chr12 64133580 64133707 -79652748 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 297 235 42 130 chr12 64133707 64133840 -79652615 + L1MEc LINE L1 2207 2350 -4046 1858 127 48 0 chr12 64133840 64134108 -79652347 + AluSq SINE Alu 1 281 -32 207 0 0 0 chr12 64134109 64134132 -79652323 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 297 235 42 130 chr12 64134132 64134163 -79652292 + L1MEc LINE L1 2316 2348 -4048 22 0 0 0 chr12 64134176 64134198 -79652257 + AT_rich Low_complexity Low_complexity 1 22 0 1112 261 51 24 chr12 64135287 64135864 -79650591 - MLT1E1 LTR MaLR 0 593 4 377 255 10 20 chr12 64135910 64136012 -79650443 + MIR3 SINE MIR 105 205 -3 301 17 68 17 chr12 64136166 64136225 -79650230 + (TA)n Simple_repeat Simple_repeat 1 62 0 1866 119 0 0 chr12 64136226 64136487 -79649968 - AluSq SINE Alu -18 295 35 260 274 39 88 chr12 64137976 64138078 -79648377 + MIR SINE MIR 32 128 -80 562 269 41 59 chr12 64138165 64138436 -79648019 + L2 LINE L2 3048 3313 0 23 0 0 0 chr12 64138669 64138692 -79647763 + AT_rich Low_complexity Low_complexity 1 23 0 5851 213 20 5 chr12 64139132 64140499 -79645956 - L1P LINE L1 -2245 3901 2514 1909 248 213 43 chr12 64141403 64142116 -79644339 - L1MC4 LINE L1 -135 7907 7316 234 0 0 0 chr12 64142116 64142142 -79644313 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1909 248 213 43 chr12 64142142 64142157 -79644298 - L1MC4 LINE L1 -726 7316 7305 1839 107 33 11 chr12 64142157 64142427 -79644028 - AluSx SINE Alu -36 276 1 1909 248 213 43 chr12 64142427 64142905 -79643550 - L1MC4 LINE L1 -737 7305 6495 435 83 0 0 chr12 64143119 64143179 -79643276 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 337 217 83 33 chr12 64144136 64144256 -79642199 + MER106A DNA MER1_type 111 236 0 261 203 0 16 chr12 64144556 64144620 -79641835 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 207 295 66 0 chr12 64144778 64144839 -79641616 - L2 LINE L2 -40 3232 3168 22 56 0 0 chr12 64145718 64145754 -79640701 + AT_rich Low_complexity Low_complexity 1 36 0 236 135 0 19 chr12 64146084 64146136 -79640319 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 237 169 123 0 chr12 64146627 64146692 -79639763 + L1MC4 LINE L1 6624 6696 -1346 243 0 0 0 chr12 64146692 64146719 -79639736 + (TG)n Simple_repeat Simple_repeat 2 28 0 2138 120 3 0 chr12 64147031 64147332 -79639123 + AluSg SINE Alu 1 302 -8 2113 77 11 3 chr12 64148134 64148420 -79638035 + AluSg SINE Alu 6 293 -17 267 309 36 0 chr12 64148746 64148830 -79637625 - MIR SINE MIR -77 185 99 289 348 42 0 chr12 64148834 64148952 -79637503 - MIR SINE MIR -136 126 4 2325 214 70 22 chr12 64149396 64150141 -79636314 + L1MC4a LINE L1 6998 7717 -91 531 253 198 0 chr12 64150488 64150670 -79635785 + MER20 DNA MER1_type 2 219 0 1504 211 36 12 chr12 64150770 64151381 -79635074 + LTR58 LTR ERV1 11 679 0 422 319 150 5 chr12 64151815 64152028 -79634427 + MIR SINE MIR 2 245 -17 2390 53 20 3 chr12 64152031 64152334 -79634121 + AluY SINE Alu 1 308 -3 288 253 105 11 chr12 64154060 64154155 -79632300 - MIR SINE MIR -145 117 14 348 190 55 0 chr12 64156017 64156180 -79630275 + (TA)n Simple_repeat Simple_repeat 1 172 0 348 24 0 0 chr12 64156649 64156690 -79629765 + (TG)n Simple_repeat Simple_repeat 2 42 0 534 362 86 22 chr12 64156889 64157251 -79629204 - L3 LINE CR1 -34 1543 1159 401 346 129 52 chr12 64157816 64158597 -79627858 - L2 LINE L2 -482 2832 1992 25 0 0 0 chr12 64158766 64158791 -79627664 + AT_rich Low_complexity Low_complexity 1 25 0 286 230 35 0 chr12 64158990 64159077 -79627378 - L1MC4 LINE L1 -1339 6703 6614 241 247 0 32 chr12 64158996 64159089 -79627366 + L1MC4 LINE L1 6614 6703 -1339 * 3183 68 27 18 chr12 64159107 64159547 -79626908 - MLT2A1 LTR ERVL 0 444 1 1789 204 58 22 chr12 64160059 64160510 -79625945 + MLT1C LTR MaLR 1 467 0 199 318 140 37 chr12 64160510 64160617 -79625838 - L2 LINE L2 -1 3271 3154 1144 193 82 8 chr12 64160904 64161147 -79625308 - MLT1D LTR MaLR 0 505 245 198 143 0 0 chr12 64161203 64161238 -79625217 + (TC)n Simple_repeat Simple_repeat 2 36 0 1050 170 31 0 chr12 64161247 64161441 -79625014 - MLT1D LTR MaLR -263 242 43 32 0 0 0 chr12 64162133 64162165 -79624290 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr12 64162745 64162767 -79623688 + AT_rich Low_complexity Low_complexity 1 22 0 739 119 8 0 chr12 64163496 64163614 -79622841 - AluSg/x SINE Alu -8 301 183 538 324 72 14 chr12 64163633 64163855 -79622600 - MIR SINE MIR 0 262 28 25 75 0 0 chr12 64164803 64164856 -79621599 + AT_rich Low_complexity Low_complexity 1 53 0 30 45 0 0 chr12 64165905 64165949 -79620506 + AT_rich Low_complexity Low_complexity 1 44 0 35696 37 58 2 chr12 64165967 64171287 -79615168 - L1PA4 LINE L1 -3 6152 537 569 79 0 0 chr12 64171287 64171363 -79615092 - L1PA4 LINE L1 -6067 79 4 24 0 0 0 chr12 64171363 64171387 -79615068 + AT_rich Low_complexity Low_complexity 1 24 0 629 263 86 0 chr12 64171532 64171707 -79614748 + LTR50 LTR ERVL 1 190 -605 685 303 112 2 chr12 64171764 64172164 -79614291 + LTR50 LTR ERVL 317 523 0 320 333 106 58 chr12 64172781 64173337 -79613118 - HAL1b LINE L1 -693 655 73 23 0 0 0 chr12 64173843 64173866 -79612589 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 64174905 64174929 -79611526 + AT_rich Low_complexity Low_complexity 1 24 0 1195 173 0 9 chr12 64175791 64176005 -79610450 - MLT1A1 LTR MaLR 0 365 154 1395 184 35 35 chr12 64176025 64176313 -79610142 + AluJo SINE Alu 3 290 -22 2062 141 0 0 chr12 64176788 64177094 -79609361 + AluSx SINE Alu 1 306 -6 428 272 10 0 chr12 64177483 64177586 -79608869 + L2 LINE L2 3210 3313 0 1559 136 35 57 chr12 64177804 64178121 -79608334 + L1MA7 LINE L1 5981 6290 -1 202 362 117 57 chr12 64178533 64178969 -79607486 + L2 LINE L2 2811 3272 0 347 317 41 16 chr12 64179082 64179205 -79607250 + MIR3 SINE MIR 83 208 0 4392 72 14 2 chr12 64229778 64230405 -79556050 - L1P LINE L1 -5500 646 12 270 300 75 19 chr12 64230713 64230950 -79555505 + L1ME LINE L1 5417 5668 -502 26 30 0 0 chr12 64231094 64231127 -79555328 + AT_rich Low_complexity Low_complexity 1 33 0 568 258 106 20 chr12 64231435 64231633 -79554822 + MIR SINE MIR 19 233 -29 1546 332 71 38 chr12 64231635 64232509 -79553946 - L1MEc LINE L1 -5216 1180 278 372 187 66 0 chr12 64232520 64232611 -79553844 - L1MEc LINE L1 -6269 127 31 181 367 50 33 chr12 64233061 64233181 -79553274 + MIR SINE MIR 12 133 -129 449 176 55 0 chr12 64233181 64233272 -79553183 + MLT2D LTR ERVL 1 96 -318 11194 110 12 6 chr12 64233382 64235170 -79551285 + L1P LINE L1 82 1881 -4265 264 324 43 36 chr12 64236401 64236540 -79549915 + MIR SINE MIR 15 154 -108 219 339 16 0 chr12 64236902 64236964 -79549491 + MIR SINE MIR 11 73 -189 383 350 65 84 chr12 64237418 64237524 -79548931 - L2 LINE L2 -430 2884 2777 3960 118 13 18 chr12 64237524 64238127 -79548328 + LTR43 LTR ERV1 1 600 -2 383 350 65 84 chr12 64238127 64238964 -79547491 - L2 LINE L2 -537 2777 1959 207 152 0 0 chr12 64239456 64239502 -79546953 + G-rich Low_complexity Low_complexity 1 46 0 16546 46 1 1 chr12 64239572 64241778 -79544677 - L1P LINE L1 -2418 3728 1523 223 254 30 0 chr12 64242009 64242076 -79544379 - L2 LINE L2 -1 3271 3203 29 84 0 0 chr12 64242193 64242264 -79544191 + AT_rich Low_complexity Low_complexity 1 71 0 183 80 0 0 chr12 64242275 64242300 -79544155 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2892 172 30 11 chr12 64242305 64242876 -79543579 + MER67C LTR ERV1 3 584 -126 25 75 0 0 chr12 64243158 64243211 -79543244 + AT_rich Low_complexity Low_complexity 1 53 0 7696 189 21 12 chr12 64243949 64246163 -79540292 + L1P4 LINE L1 3544 5777 -384 333 324 18 0 chr12 64247748 64247859 -79538596 + MIR3 SINE MIR 91 203 -5 236 185 19 0 chr12 64248869 64248923 -79537532 + (CA)n Simple_repeat Simple_repeat 1 55 0 229 93 116 0 chr12 64248923 64248966 -79537489 + MLT2D LTR ERVL 367 414 0 213 289 15 111 chr12 64248967 64249102 -79537353 + MIR SINE MIR 130 251 -11 431 292 22 15 chr12 64249121 64249258 -79537197 - MIR SINE MIR -76 186 49 664 284 0 0 chr12 64249477 64249660 -79536795 + L1ME2 LINE L1 5433 5615 -547 312 139 42 56 chr12 64249672 64249744 -79536711 - MLT1A2 LTR MaLR -303 71 1 552 250 134 5 chr12 64249744 64249960 -79536495 + L1ME2 LINE L1 5909 6152 -12 13599 77 8 5 chr12 64250222 64252180 -79534275 - L1P LINE L1 -4169 1977 13 301 294 7 49 chr12 64252418 64252561 -79533894 + L1MC4 LINE L1 6567 6703 -1339 211 182 0 0 chr12 64252562 64252595 -79533860 + (CA)n Simple_repeat Simple_repeat 1 33 0 788 235 16 6 chr12 64252685 64252868 -79533587 + MER5A DNA MER1_type 4 188 -1 1044 146 6 0 chr12 64252999 64253157 -79533298 + AluSg/x SINE Alu 138 296 -16 3428 186 54 29 chr12 64253157 64253956 -79532499 - L1MA10 LINE L1 -46 6288 5470 2413 122 6 0 chr12 64253962 64254315 -79532140 + THE1A LTR MaLR 1 355 0 5875 108 11 8 chr12 64254315 64255214 -79531241 + THE1A-int LTR MaLR 1 902 -678 240 193 48 36 chr12 64255924 64256007 -79530448 - L1MC5 LINE L1 -34 7927 7844 * 747 270 77 81 chr12 64256005 64256936 -79529519 - L1MEc LINE L1 -3994 2402 1475 285 351 148 27 chr12 64257814 64258295 -79528160 - L2 LINE L2 -96 3217 2665 340 185 109 59 chr12 64258345 64258464 -79527991 - L2 LINE L2 -71 3242 3118 1952 116 128 28 chr12 64258541 64258930 -79527525 - MSTA LTR MaLR 0 428 1 3555 154 20 9 chr12 64258930 64259565 -79526890 - MSTA-int LTR MaLR 0 1580 939 291 207 12 12 chr12 64259666 64259748 -79526707 + AluSp/q SINE Alu 222 303 0 1257 61 6 0 chr12 64259753 64259918 -79526537 + LTR12 LTR ERV1 490 655 -59 21 57 0 0 chr12 64260405 64260440 -79526015 + AT_rich Low_complexity Low_complexity 1 35 0 209 136 0 23 chr12 64261478 64261522 -79524933 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1484 246 51 9 chr12 64261563 64261997 -79524458 + L1MC4a LINE L1 6166 6617 -1191 712 311 60 18 chr12 64262093 64262475 -79523980 + HAL1 LINE L1 1699 2096 -411 229 351 52 0 chr12 64262531 64262685 -79523770 + L1MEc LINE L1 1563 1724 -4672 304 362 104 7 chr12 64262893 64263191 -79523264 + L1MEc LINE L1 2259 2585 -3630 668 258 126 0 chr12 64263207 64263364 -79523091 + MER58A DNA MER1_type 1 189 -2231 758 156 25 19 chr12 64263364 64263524 -79522931 + L1MB8 LINE L1 6018 6178 0 668 258 126 0 chr12 64263524 64263564 -79522891 + MER58A DNA MER1_type 189 223 -1 29136 45 3 1 chr12 64263835 64268204 -79518251 - L1PA3 LINE L1 -15 6140 1764 2315 60 23 3 chr12 64268436 64268737 -79517718 - AluY SINE Alu -4 307 1 354 311 87 32 chr12 64268737 64268956 -79517499 + L1MEc LINE L1 2745 2975 -3240 1427 197 122 30 chr12 64268986 64269438 -79517017 - MER89 LTR ERV1 0 559 3 266 263 18 88 chr12 64269642 64269756 -79516699 + L2 LINE L2 2782 2887 -427 327 248 68 0 chr12 64269881 64269998 -79516457 + L1M4 LINE L1 2218 2342 -3804 21 71 0 0 chr12 64270414 64270456 -79515999 + AT_rich Low_complexity Low_complexity 1 42 0 236 235 118 15 chr12 64270927 64270995 -79515460 + HAL1 LINE L1 796 870 -1637 455 314 49 49 chr12 64271064 64271309 -79515146 + MIR SINE MIR 18 262 0 609 216 154 0 chr12 64271468 64271630 -79514825 - MER3 DNA MER1_type -20 189 3 1878 150 3 29 chr12 64271886 64272200 -79514255 - AluJo SINE Alu -4 308 3 1500 83 9 28 chr12 64274313 64274530 -79511925 + AluSq SINE Alu 87 299 -14 26 0 0 0 chr12 64274652 64274678 -79511777 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr12 64276003 64276035 -79510420 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 64276116 64276137 -79510318 + AT_rich Low_complexity Low_complexity 1 21 0 32 67 0 0 chr12 64276322 64276382 -79510073 + AT_rich Low_complexity Low_complexity 1 60 0 2221 112 56 0 chr12 64276743 64277117 -79509338 - L1MA2 LINE L1 0 6304 5910 2828 139 2 7 chr12 64277117 64277568 -79508887 + L1MA2 LINE L1 5467 5917 -387 * 6772 181 37 14 chr12 64277558 64278968 -79507487 - L1 LINE L1 -1390 6175 4733 * 7545 186 33 84 chr12 64278966 64280684 -79505771 - L1 LINE L1 -5922 1643 14 274 339 11 9 chr12 64280914 64281022 -79505433 + MIR SINE MIR 8 122 -86 23 0 0 0 chr12 64281835 64281858 -79504597 + AT_rich Low_complexity Low_complexity 1 23 0 2746 7 0 0 chr12 64282059 64282356 -79504099 + AluYa5 SINE Alu 1 297 -14 1571 118 65 0 chr12 64282522 64282785 -79503670 + L1MA5A LINE L1 6018 6297 0 2738 87 58 12 chr12 64282967 64283394 -79503061 + L1MA1 LINE L1 5851 6297 -5 30 0 0 0 chr12 64283842 64283872 -79502583 + AT_rich Low_complexity Low_complexity 1 30 0 3128 153 34 4 chr12 64284192 64284753 -79501702 - L1PA16 LINE L1 -2 6164 5587 193 339 127 17 chr12 64284914 64285150 -79501305 - L2 LINE L2 -457 2857 2596 309 135 0 0 chr12 64285739 64285791 -79500664 + (TA)n Simple_repeat Simple_repeat 1 52 0 222 386 0 0 chr12 64286247 64286317 -79500138 + L2 LINE L2 2560 2629 -685 829 251 84 62 chr12 64286447 64286695 -79499760 - L1ME1 LINE L1 -6 6160 5919 2160 129 0 3 chr12 64286695 64287004 -79499451 - AluSx SINE Alu -4 308 1 829 251 84 62 chr12 64287004 64287240 -79499215 - L1ME1 LINE L1 -247 5919 5665 339 157 48 12 chr12 64287235 64287318 -79499137 + L1MA8 LINE L1 5268 5353 -938 * 3023 143 28 7 chr12 64287318 64287859 -79498596 + L1MA8 LINE L1 5736 6291 0 753 238 40 8 chr12 64287867 64288061 -79498394 - L1ME1 LINE L1 -483 5683 5491 625 94 0 12 chr12 64288878 64288963 -79497492 + L1P LINE L1 15 98 -6048 352 256 143 75 chr12 64289096 64289362 -79497093 + L2 LINE L2 3024 3307 -6 496 274 22 34 chr12 64289529 64289708 -79496747 - MER5B DNA MER1_type -1 177 1 266 211 0 0 chr12 64289864 64289921 -79496534 + (TG)n Simple_repeat Simple_repeat 2 58 0 2248 119 0 0 chr12 64290072 64290375 -79496080 - AluSq SINE Alu -10 303 1 24 32 0 0 chr12 64291384 64291415 -79495040 + AT_rich Low_complexity Low_complexity 1 31 0 421 251 84 42 chr12 64291579 64291794 -79494661 - LTR41 LTR ERVL -6 767 544 497 211 201 21 chr12 64292241 64292435 -79494020 - LTR41 LTR ERVL -544 229 1 2849 325 68 64 chr12 64295098 64297351 -79489104 + ERVL LTR ERVL 2254 4514 -1250 366 330 57 22 chr12 64297868 64298095 -79488360 + LTR16C LTR ERVL 257 491 0 192 158 0 0 chr12 64298370 64298408 -79488047 + (CATA)n Simple_repeat Simple_repeat 2 39 0 277 313 134 14 chr12 64298522 64298813 -79487642 - L1ME LINE L1 -304 5817 5492 458 119 12 0 chr12 64298864 64298948 -79487507 + (TC)n Simple_repeat Simple_repeat 2 86 0 257 284 14 50 chr12 64299167 64299308 -79487147 + GA-rich Low_complexity Low_complexity 3 138 0 2658 177 56 6 chr12 64299482 64300019 -79486436 - MER34B LTR ERV1 -1 564 1 21 0 0 0 chr12 64300621 64300642 -79485813 + AT_rich Low_complexity Low_complexity 1 21 0 4297 105 20 14 chr12 64300972 64301628 -79484827 + THE1A-int LTR MaLR 921 1580 0 2467 105 8 0 chr12 64301628 64301980 -79484475 + THE1A LTR MaLR 1 355 0 2758 186 13 23 chr12 64301981 64302698 -79483757 - L1M3 LINE L1 -692 5476 4769 1862 221 39 33 chr12 64302693 64303209 -79483246 + L1 LINE L1 4004 4522 -1624 * 1289 185 59 53 chr12 64303211 64303568 -79482887 + MER67A LTR ERV1 185 543 0 27605 44 4 5 chr12 64304160 64308414 -79478041 - L1PA5 LINE L1 -6 6148 1901 4652 163 24 43 chr12 64308539 64309470 -79476985 - MSTA-int LTR MaLR -665 915 3 1640 141 182 22 chr12 64309472 64309841 -79476614 - MSTA LTR MaLR 0 428 1 258 362 95 0 chr12 64309852 64309867 -79476588 - L2 LINE L2 -288 3025 3013 240 111 0 0 chr12 64309867 64309903 -79476552 + (TAA)n Simple_repeat Simple_repeat 1 36 0 258 362 95 0 chr12 64309903 64310003 -79476452 - L2 LINE L2 -300 3013 2899 404 252 101 0 chr12 64310003 64310122 -79476333 + L1ME LINE L1 5634 5764 -406 611 222 30 12 chr12 64310426 64310593 -79475862 + MER3 DNA MER1_type 1 123 -86 233 281 158 18 chr12 64312831 64312945 -79473510 - MIR SINE MIR -13 249 120 2328 93 0 0 chr12 64313190 64313491 -79472964 - AluSq SINE Alu -12 301 1 4972 139 30 6 chr12 64314775 64315645 -79470810 - L1MC1 LINE L1 -1 6332 5442 896 219 0 0 chr12 64316015 64316170 -79470285 + FRAM SINE Alu 1 155 -21 28 0 0 0 chr12 64316191 64316219 -79470236 + AT_rich Low_complexity Low_complexity 1 28 0 28 79 0 0 chr12 64317354 64317417 -79469038 + AT_rich Low_complexity Low_complexity 1 63 0 333 0 0 0 chr12 64317461 64317498 -79468957 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr12 64317958 64317980 -79468475 + AT_rich Low_complexity Low_complexity 1 22 0 932 285 26 36 chr12 64318359 64318748 -79467707 - L1ME3A LINE L1 -22 6148 5764 447 318 92 11 chr12 64318747 64319030 -79467425 - L1ME3A LINE L1 -1058 5088 4783 * 401 297 0 27 chr12 64319049 64319160 -79467295 + AluSp SINE Alu 2 109 -194 245 224 121 43 chr12 64319465 64319581 -79466874 - L1ME3A LINE L1 -1383 4763 4639 230 170 43 0 chr12 64319633 64319680 -79466775 + L2 LINE L2 3265 3313 0 216 245 20 0 chr12 64319845 64319894 -79466561 - L2 LINE L2 -39 3233 3184 1738 176 0 3 chr12 64320063 64320364 -79466091 - AluSx SINE Alu -12 300 1 1611 176 17 20 chr12 64321168 64321464 -79464991 + AluSx SINE Alu 7 301 -11 336 127 0 0 chr12 64321465 64321520 -79464935 + (GGAAA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr12 64321660 64321683 -79464772 + AT_rich Low_complexity Low_complexity 1 23 0 200 287 82 74 chr12 64322678 64322800 -79463655 + L2 LINE L2 3191 3313 0 567 297 73 16 chr12 64323015 64323261 -79463194 - MIR SINE MIR -1 261 2 265 284 76 65 chr12 64323452 64323793 -79462662 + L1ME4a LINE L1 5669 6013 -108 552 190 26 0 chr12 64324788 64324904 -79461551 + L1MC5 LINE L1 6983 7101 -860 314 257 35 62 chr12 64325276 64325389 -79461066 - MER5B DNA MER1_type -48 130 21 23 97 0 0 chr12 64325730 64325802 -79460653 + AT_rich Low_complexity Low_complexity 1 72 0 26 0 0 0 chr12 64326470 64326496 -79459959 + AT_rich Low_complexity Low_complexity 1 26 0 1315 186 19 30 chr12 64327994 64328257 -79458198 + AluJo SINE Alu 14 273 -39 2976 166 152 7 chr12 64329038 64329618 -79456837 + MER52A LTR ERV1 1092 1755 0 21 0 0 0 chr12 64330445 64330466 -79455989 + AT_rich Low_complexity Low_complexity 1 21 0 758 232 16 121 chr12 64331530 64331845 -79454610 + MLT1A1 LTR MaLR 4 285 -80 357 381 122 25 chr12 64331914 64332350 -79454105 + L2 LINE L2 2298 2775 -539 404 350 36 14 chr12 64332657 64332797 -79453658 + L2 LINE L2 3125 3267 -5 188 195 49 0 chr12 64332802 64332843 -79453612 - L2 LINE L2 -15 3298 3256 636 245 14 106 chr12 64332925 64333014 -79453441 + L2 LINE L2 3058 3154 -159 1780 159 3 22 chr12 64333014 64333328 -79453127 - AluJo SINE Alu -4 308 1 636 245 14 106 chr12 64333328 64333520 -79452935 + L2 LINE L2 3154 3313 0 702 227 72 41 chr12 64333628 64333822 -79452633 + MER20 DNA MER1_type 19 218 -1 2067 123 16 3 chr12 64334379 64334687 -79451768 + AluSx SINE Alu 1 312 0 1913 25 8 4 chr12 64334756 64334991 -79451464 - L1HS LINE L1 -5 6150 5915 25 31 0 0 chr12 64335013 64335045 -79451410 + AT_rich Low_complexity Low_complexity 1 32 0 1141 221 116 18 chr12 64335118 64335568 -79450887 - MLT1E1 LTR MaLR -96 558 1 734 316 108 0 chr12 64337504 64337792 -79448663 + L1MEc LINE L1 37 355 -6041 424 249 143 59 chr12 64338392 64338629 -79447826 - L2 LINE L2 -5 3308 3052 1510 281 20 68 chr12 64338649 64338678 -79447777 - L2 LINE L2 -385 2929 2900 1732 33 5 0 chr12 64338678 64338893 -79447562 - L1PA4 LINE L1 0 6155 5940 1510 281 20 68 chr12 64338893 64339521 -79446934 - L2 LINE L2 -414 2900 2304 198 0 0 0 chr12 64340116 64340138 -79446317 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 234 0 0 0 chr12 64340376 64340402 -79446053 + (CA)n Simple_repeat Simple_repeat 1 26 0 528 284 91 69 chr12 64342115 64342907 -79443548 - HAL1 LINE L1 -909 1598 790 291 304 27 9 chr12 64343738 64343850 -79442605 + L3b LINE CR1 1130 1243 -340 740 262 68 69 chr12 64344137 64344603 -79441852 - MLT1D LTR MaLR 0 467 16 24 0 0 0 chr12 64345053 64345077 -79441378 + AT_rich Low_complexity Low_complexity 1 24 0 529 284 26 58 chr12 64345680 64345725 -79440730 + MIR SINE MIR 52 97 -165 1312 184 10 126 chr12 64345725 64346138 -79440317 - MLT1A1 LTR MaLR 0 365 1 529 284 26 58 chr12 64346138 64346282 -79440173 + MIR SINE MIR 97 235 -27 236 352 112 54 chr12 64346794 64347391 -79439064 - L2 LINE L2 -397 2917 2286 1978 195 51 7 chr12 64347505 64347915 -79438540 - MSTA LTR MaLR 0 428 1 1192 143 37 0 chr12 64348086 64348275 -79438180 - THE1C LTR MaLR -179 196 1 2447 113 3 30 chr12 64348275 64348647 -79437808 - THE1C-int LTR MaLR 0 1580 1219 * 3556 124 74 79 chr12 64348646 64349333 -79437122 - THE1C-int LTR MaLR -896 684 1 2173 129 41 14 chr12 64349333 64349698 -79436757 - THE1C LTR MaLR 0 375 1 791 175 0 0 chr12 64349940 64350066 -79436389 + FLAM_C SINE Alu 1 126 -7 380 308 31 41 chr12 64350133 64350328 -79436127 + PABL_B LTR ERV1 1 193 -474 963 214 55 45 chr12 64350353 64350661 -79435794 + PABL_B LTR ERV1 346 656 -11 1769 156 9 41 chr12 64350869 64351189 -79435266 + AluSq SINE Alu 1 310 -3 265 371 122 45 chr12 64351894 64352139 -79434316 - L2 LINE L2 0 3272 3009 469 351 161 27 chr12 64352309 64352831 -79433624 - L2 LINE L2 -471 2843 2252 246 354 12 37 chr12 64353031 64353147 -79433308 - L2 LINE L2 -1350 1964 1852 1517 128 0 13 chr12 64353147 64353374 -79433081 + AluSg/x SINE Alu 82 305 -4 246 354 12 37 chr12 64353374 64353421 -79433034 - L2 LINE L2 -1462 1852 1805 301 306 0 10 chr12 64353483 64353581 -79432874 + L1MEc LINE L1 38 134 -6262 385 373 17 21 chr12 64353775 64354011 -79432444 + L1MEc LINE L1 295 529 -5867 803 237 19 47 chr12 64354137 64354352 -79432103 + MER20 DNA MER1_type 11 219 0 30 27 0 0 chr12 64355573 64355610 -79430845 + AT_rich Low_complexity Low_complexity 1 37 0 232 249 48 109 chr12 64356039 64356204 -79430251 + L1MEc LINE L1 660 814 -5582 929 271 114 40 chr12 64356219 64356963 -79429492 + L1MEc LINE L1 874 1672 -4724 3192 43 13 0 chr12 64357063 64357459 -79428996 + L1PA3 LINE L1 5754 6154 -1 399 320 39 22 chr12 64357880 64358058 -79428397 - MIR SINE MIR -1 261 81 26 0 0 0 chr12 64358443 64358469 -79427986 + AT_rich Low_complexity Low_complexity 1 26 0 264 132 13 26 chr12 64358779 64358855 -79427600 + (TA)n Simple_repeat Simple_repeat 1 75 0 2236 158 58 19 chr12 64359359 64359771 -79426684 - MSTA LTR MaLR 0 428 1 23 97 0 0 chr12 64360612 64360684 -79425771 + AT_rich Low_complexity Low_complexity 1 72 0 10872 30 1 0 chr12 64360767 64362080 -79424375 - L1P1 LINE L1 -775 5371 4058 1759 10 0 0 chr12 64362080 64362280 -79424175 + L1P1 LINE L1 5376 5575 -580 426 343 179 19 chr12 64362382 64362802 -79423653 - L3 LINE CR1 -5 1572 1086 2059 253 90 38 chr12 64363449 64364594 -79421861 + L1ME1 LINE L1 4968 6333 -1 234 237 111 67 chr12 64364921 64365056 -79421399 + L2 LINE L2 3155 3295 -18 328 325 57 25 chr12 64365102 64365259 -79421196 - MIR SINE MIR -44 218 57 187 355 58 19 chr12 64366050 64366205 -79420250 - L2 LINE L2 -1006 2308 2148 2015 83 0 0 chr12 64368067 64368321 -79418134 + AluSq SINE Alu 24 277 -36 397 278 30 142 chr12 64368485 64368816 -79417639 - L2 LINE L2 0 3313 3020 263 290 196 9 chr12 64369105 64369212 -79417243 - L2 LINE L2 -1 3271 3145 198 0 0 0 chr12 64369253 64369275 -79417180 + (A)n Simple_repeat Simple_repeat 1 22 0 276 285 283 50 chr12 64369655 64370051 -79416404 + L2 LINE L2 2818 3305 -8 22 0 0 0 chr12 64370129 64370151 -79416304 + AT_rich Low_complexity Low_complexity 1 22 0 268 296 163 23 chr12 64370827 64370999 -79415456 + MER117 DNA MER1_type 1 196 -1 7546 27 18 0 chr12 64371457 64372587 -79413868 - L1PA3 LINE L1 -5 6150 5014 1199 180 98 133 chr12 64372688 64372736 -79413719 - MLT1C LTR MaLR -55 412 364 2009 150 3 0 chr12 64372736 64373042 -79413413 + AluSq SINE Alu 1 307 -6 1199 180 98 133 chr12 64373042 64373420 -79413035 - MLT1C LTR MaLR -103 364 1 243 278 314 11 chr12 64374910 64375101 -79411354 + MIR SINE MIR 6 254 -8 373 259 17 0 chr12 64375252 64375344 -79411111 + AluJ/FLAM SINE Alu 1 79 -223 979 273 180 29 chr12 64375478 64376153 -79410302 - L2 LINE L2 -21 3292 2516 1689 122 118 0 chr12 64376226 64376497 -79409958 - AluSx SINE Alu -9 303 1 1895 169 18 121 chr12 64376569 64376639 -79409816 + MER41B LTR ERV1 114 190 -445 2125 118 0 7 chr12 64376639 64376943 -79409512 + AluSg1 SINE Alu 1 302 -7 1895 169 18 121 chr12 64376943 64377416 -79409039 + MER41B LTR ERV1 190 601 -34 25 0 0 0 chr12 64378867 64378892 -79407563 + AT_rich Low_complexity Low_complexity 1 25 0 32 43 0 0 chr12 64379809 64379855 -79406600 + AT_rich Low_complexity Low_complexity 1 46 0 180 138 0 0 chr12 64379947 64379976 -79406479 + L2 LINE L2 3271 3299 -14 1866 26 4 4 chr12 64380613 64380844 -79405611 + L1PA3 LINE L1 5924 6154 -1 192 111 0 0 chr12 64380866 64380902 -79405553 + (A)n Simple_repeat Simple_repeat 1 36 0 654 196 8 23 chr12 64382318 64382451 -79404004 + FRAM SINE Alu 1 131 -45 327 334 31 5 chr12 64382997 64383184 -79403271 + L1ME4a LINE L1 5365 5555 -566 354 300 42 46 chr12 64383198 64383218 -79403237 + L1ME4a LINE L1 5677 5696 -425 276 77 0 0 chr12 64383218 64383257 -79403198 + (CA)n Simple_repeat Simple_repeat 2 40 0 354 300 42 46 chr12 64383257 64383499 -79402956 + L1ME4a LINE L1 5696 5938 -183 312 314 61 41 chr12 64383707 64384150 -79402305 - L1M4 LINE L1 -1147 4999 4548 181 359 19 39 chr12 64385011 64385114 -79401341 - L2 LINE L2 -219 3053 2953 2622 39 0 0 chr12 64385353 64385659 -79400796 - AluY SINE Alu -5 306 1 503 266 58 26 chr12 64386271 64386425 -79400030 - L2 LINE L2 -6 3266 3108 4282 85 21 0 chr12 64386426 64387000 -79399455 + THE1B-int LTR MaLR 995 1580 0 1947 161 33 25 chr12 64387000 64387361 -79399094 + THE1B LTR MaLR 1 364 0 720 198 18 104 chr12 64387363 64387517 -79398938 - MLT1D LTR MaLR -295 210 79 2036 159 9 24 chr12 64387517 64387856 -79398599 - MER1B DNA MER1_type 0 337 4 720 198 18 104 chr12 64387856 64387923 -79398532 - MLT1D LTR MaLR -426 79 8 296 318 45 50 chr12 64388454 64388655 -79397800 - L2 LINE L2 -3 3310 3111 309 374 0 0 chr12 64388722 64388821 -79397634 + L2 LINE L2 3210 3308 -5 213 231 13 51 chr12 64390548 64390626 -79395829 + GA-rich Low_complexity Low_complexity 4 78 0 21 71 0 0 chr12 64390647 64390689 -79395766 + AT_rich Low_complexity Low_complexity 1 42 0 3771 52 0 0 chr12 64390981 64391457 -79394998 - L1P LINE L1 -915 5231 4756 6627 42 1 0 chr12 64391458 64392264 -79394191 + L1PA5 LINE L1 5343 6149 -5 218 215 0 15 chr12 64392706 64392771 -79393684 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 312 257 14 0 chr12 64393490 64393560 -79392895 - LTR41 LTR ERVL -600 173 103 8108 201 24 115 chr12 64393563 64396235 -79390220 + L1PB3 LINE L1 908 3822 -2389 2227 165 34 23 chr12 64396235 64396777 -79389678 - MLT2A2 LTR ERVL 0 554 1 8108 201 24 115 chr12 64396777 64397793 -79388662 + L1PB3 LINE L1 3822 4515 -1696 2424 59 0 34 chr12 64397793 64398115 -79388340 + AluY SINE Alu 1 311 0 8108 201 24 115 chr12 64398115 64399047 -79387408 + L1PB3 LINE L1 4515 5530 -681 639 100 0 0 chr12 64399047 64399137 -79387318 - AluY SINE Alu -9 302 213 4243 121 33 1 chr12 64399138 64399809 -79386646 + L1PB3 LINE L1 5518 6209 -2 22 0 0 0 chr12 64400722 64400744 -79385711 + AT_rich Low_complexity Low_complexity 1 22 0 1098 271 165 16 chr12 64400748 64401413 -79385042 - HAL1 LINE L1 -5 2502 1739 899 237 58 34 chr12 64401426 64402009 -79384446 - HAL1 LINE L1 -919 1588 946 593 293 140 5 chr12 64402039 64402261 -79384194 + MIR SINE MIR 2 253 -9 237 312 200 6 chr12 64402328 64402498 -79383957 - HAL1 LINE L1 -1639 868 666 523 289 151 0 chr12 64402710 64402928 -79383527 - HAL1 LINE L1 -2252 255 5 26 0 0 0 chr12 64403701 64403727 -79382728 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr12 64403777 64403803 -79382652 + (TTA)n Simple_repeat Simple_repeat 2 27 0 15988 38 1 0 chr12 64403804 64404555 -79381900 - L1PA3 LINE L1 -17 6138 5389 2718 19 0 0 chr12 64404555 64404863 -79381592 - AluYa5 SINE Alu -3 308 1 15988 38 1 0 chr12 64404863 64406840 -79379615 - L1PA3 LINE L1 -766 5389 3421 11207 28 4 0 chr12 64406840 64408216 -79378239 + L1P LINE L1 1904 3284 -2862 1600 189 0 34 chr12 64408619 64408916 -79377539 - AluJo SINE Alu -25 287 1 24 67 0 0 chr12 64410160 64410205 -79376250 + AT_rich Low_complexity Low_complexity 1 45 0 261 167 0 0 chr12 64410398 64410452 -79376003 + (CA)n Simple_repeat Simple_repeat 2 55 0 989 258 52 24 chr12 64412559 64413040 -79373415 + MLT1G LTR MaLR 2 557 -33 362 298 25 15 chr12 64413100 64413298 -79373157 + L1PA13 LINE L1 16 215 -7366 9793 202 23 22 chr12 64413419 64415812 -79370643 + L1PA13 LINE L1 56 2445 -5156 2312 124 0 0 chr12 64415812 64416119 -79370336 + AluSx SINE Alu 1 307 -5 9793 202 23 22 chr12 64416119 64420171 -79366284 + L1PA13 LINE L1 2445 7600 -1 24 0 0 0 chr12 64420189 64420213 -79366242 + AT_rich Low_complexity Low_complexity 1 24 0 577 112 28 9 chr12 64420450 64420557 -79365898 + L1MA3 LINE L1 6197 6305 0 216 250 0 18 chr12 64420687 64420743 -79365712 + GA-rich Low_complexity Low_complexity 2 56 0 21 57 0 0 chr12 64421561 64421596 -79364859 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr12 64422337 64422365 -79364090 + AT_rich Low_complexity Low_complexity 1 28 0 187 236 28 123 chr12 64422869 64422975 -79363480 + MIR3 SINE MIR 15 110 -98 1798 216 105 17 chr12 64425823 64426282 -79360173 + MLT1D LTR MaLR 7 505 0 1954 129 4 0 chr12 64427456 64427735 -79358720 + AluSx SINE Alu 1 280 -32 219 36 0 0 chr12 64427736 64427764 -79358691 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 894 76 0 23 chr12 64427894 64428025 -79358430 + L1MA1 LINE L1 6171 6298 -4 324 177 38 0 chr12 64428503 64428582 -79357873 + MER53 DNA DNA 1 82 -107 298 129 32 75 chr12 64428517 64428610 -79357845 - MER53 DNA DNA -5 184 96 * 2803 59 5 43 chr12 64428662 64429054 -79357401 - L1PA7 LINE L1 0 6154 5778 189 107 0 0 chr12 64429054 64429082 -79357373 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2290 60 4 0 chr12 64429082 64429363 -79357092 - AluY SINE Alu -28 283 2 196 342 0 0 chr12 64429620 64429696 -79356759 - MIR SINE MIR -66 142 67 265 229 0 29 chr12 64429874 64429944 -79356511 + GA-rich Low_complexity Low_complexity 4 71 0 28 0 0 0 chr12 64430360 64430388 -79356067 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 64430548 64430569 -79355886 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr12 64431742 64431811 -79354644 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr12 64431878 64431899 -79354556 + AT_rich Low_complexity Low_complexity 1 21 0 2998 177 20 16 chr12 64431902 64431954 -79354501 - L1MB3 LINE L1 -1 6182 6132 2231 100 7 0 chr12 64431954 64432244 -79354211 - AluSq SINE Alu -21 292 1 2998 177 20 16 chr12 64432244 64432835 -79353620 - L1MB3 LINE L1 -51 6132 5536 2358 84 0 3 chr12 64432992 64433289 -79353166 + AluY SINE Alu 1 296 -15 1782 164 3 7 chr12 64433918 64434204 -79352251 + AluSx SINE Alu 1 285 -27 29 28 0 0 chr12 64434204 64434240 -79352215 + AT_rich Low_complexity Low_complexity 1 36 0 307 363 97 17 chr12 64434486 64434723 -79351732 + L1ME LINE L1 5340 5595 -2213 184 366 86 0 chr12 64434896 64434989 -79351466 - MIR SINE MIR -108 154 54 2210 138 122 42 chr12 64435100 64435599 -79350856 + MER4B LTR ERV1 1 539 -71 230 35 0 0 chr12 64435596 64435625 -79350830 + MER4D LTR ERV1 844 872 0 * 233 197 98 33 chr12 64435704 64435826 -79350629 + L1ME LINE L1 5773 5902 -219 74 81 0 0 chr12 64435837 64436009 -79350446 + AT_rich Low_complexity Low_complexity 1 172 0 5763 95 11 24 chr12 64436426 64436870 -79349585 + MER4D LTR ERV1 1 430 -442 2019 138 57 0 chr12 64436870 64437188 -79349267 + MER1B DNA MER1_type 2 337 0 5763 95 11 24 chr12 64437188 64437626 -79348829 + MER4D LTR ERV1 430 872 0 459 294 71 16 chr12 64437831 64438015 -79348440 + MIR SINE MIR 57 250 -12 303 189 68 0 chr12 64438607 64438681 -79347774 - MIR3 SINE MIR -25 183 105 219 186 0 0 chr12 64438689 64438732 -79347723 + L2 LINE L2 3269 3311 -2 402 369 147 0 chr12 64438772 64438997 -79347458 - MIR SINE MIR -4 258 1 350 318 159 5 chr12 64439039 64439234 -79347221 + L2 LINE L2 2530 2754 -560 183 267 224 0 chr12 64439655 64439771 -79346684 + MIR SINE MIR 95 236 -26 955 102 0 15 chr12 64440565 64440702 -79345753 + AluSp/q SINE Alu 174 308 -5 235 197 0 28 chr12 64441329 64441400 -79345055 + (TA)n Simple_repeat Simple_repeat 2 70 0 1606 173 51 3 chr12 64441487 64441823 -79344632 - MER46B DNA MER2_type 0 236 10 570 274 74 0 chr12 64441834 64442009 -79344446 - MIR SINE MIR -25 237 50 384 207 37 12 chr12 64442922 64443004 -79343451 - MER5A DNA MER1_type -99 90 7 4883 129 58 3 chr12 64443047 64444014 -79342441 - L1PA16 LINE L1 -9 6157 5141 506 282 167 6 chr12 64444040 64444214 -79342241 + MIR SINE MIR 31 232 -30 237 65 0 0 chr12 64444348 64444379 -79342076 + (TG)n Simple_repeat Simple_repeat 2 32 0 395 314 106 43 chr12 64444794 64445210 -79341245 - L2 LINE L2 -265 3007 2562 304 326 122 35 chr12 64446249 64446479 -79339976 + MIR SINE MIR 2 251 -11 319 319 55 66 chr12 64446505 64446543 -79339912 - MER5A DNA MER1_type -1 188 151 1533 178 61 0 chr12 64446543 64446807 -79339648 + AluJo SINE Alu 1 280 -32 221 57 29 0 chr12 64446807 64446842 -79339613 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 319 319 55 66 chr12 64446842 64446984 -79339471 - MER5A DNA MER1_type -36 153 9 21 0 0 0 chr12 64447290 64447311 -79339144 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr12 64448581 64448629 -79337826 + AT_rich Low_complexity Low_complexity 1 48 0 705 194 56 19 chr12 64450229 64450389 -79336066 + FAM SINE Alu 4 169 -6 207 304 120 8 chr12 64450465 64450590 -79335865 + L2 LINE L2 608 746 -2568 206 32 32 0 chr12 64451021 64451052 -79335403 + (TA)n Simple_repeat Simple_repeat 2 33 0 213 317 140 66 chr12 64451170 64451669 -79334786 + L2 LINE L2 809 1344 -1970 21 0 0 0 chr12 64451705 64451726 -79334729 + AT_rich Low_complexity Low_complexity 1 21 0 629 249 96 39 chr12 64451730 64451886 -79334569 - MIR SINE MIR 0 262 87 1930 144 3 7 chr12 64451886 64452345 -79334110 + AluSq SINE Alu 1 458 0 629 249 96 39 chr12 64452345 64452416 -79334039 - MIR SINE MIR -175 87 21 548 305 135 27 chr12 64452679 64453049 -79333406 - HAL1 LINE L1 -1384 1123 714 1368 171 162 10 chr12 64453079 64453388 -79333067 + MLT1C LTR MaLR 3 358 -109 201 39 0 0 chr12 64453388 64453414 -79333041 + (TA)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chr12 64453545 64453569 -79332886 + (TA)n Simple_repeat Simple_repeat 2 25 0 1590 162 7 35 chr12 64453577 64453861 -79332594 - AluJb SINE Alu -22 290 15 724 115 0 0 chr12 64453877 64453981 -79332474 + MLT1C LTR MaLR 361 464 -3 198 0 0 0 chr12 64454124 64454146 -79332309 + (CA)n Simple_repeat Simple_repeat 2 23 0 779 351 62 25 chr12 64454638 64455250 -79331205 + L2 LINE L2 1712 2346 -968 1486 185 41 31 chr12 64456136 64456291 -79330164 - AluJo SINE Alu -17 295 134 2350 103 0 0 chr12 64456291 64456593 -79329862 - AluSx SINE Alu -10 302 1 1486 185 41 31 chr12 64456593 64456729 -79329726 - AluJo SINE Alu -178 134 1 1070 282 113 7 chr12 64457119 64457686 -79328769 + L2 LINE L2 2553 3188 -125 222 64 21 43 chr12 64457697 64457744 -79328711 + (CA)n Simple_repeat Simple_repeat 1 46 0 456 319 32 11 chr12 64458558 64458746 -79327709 + MIR SINE MIR 65 256 -6 2615 61 0 0 chr12 64459411 64459721 -79326734 + AluY SINE Alu 1 310 -1 1034 292 92 13 chr12 64459850 64460241 -79326214 + LTR16C LTR ERVL 70 491 0 359 368 67 12 chr12 64460753 64461006 -79325449 + HERV16 LTR ERVL 1805 2071 -2925 395 301 22 83 chr12 64461371 64461733 -79324722 + HERV16 LTR ERVL 2605 2944 -2541 860 193 12 6 chr12 64461755 64461921 -79324534 + FRAM SINE Alu 1 164 -12 1945 110 43 20 chr12 64461923 64462223 -79324232 + AluSg SINE Alu 1 307 -3 660 325 82 20 chr12 64462476 64462879 -79323576 + LTR16C LTR ERVL 46 473 -18 2402 126 22 0 chr12 64463309 64463665 -79322790 - THE1B LTR MaLR 0 364 1 1892 88 8 0 chr12 64463666 64463928 -79322527 - THE1B-int LTR MaLR -1 1579 1316 1835 140 46 27 chr12 64463932 64464260 -79322195 - THE1B LTR MaLR -30 334 1 193 119 48 0 chr12 64464537 64464579 -79321876 + CT-rich Low_complexity Low_complexity 3 46 0 574 129 43 0 chr12 64464751 64464844 -79321611 + L1PA16 LINE L1 5709 5805 -361 2292 129 9 6 chr12 64465024 64465374 -79321081 + L1PA16 LINE L1 5814 6164 -2 303 302 45 120 chr12 64465752 64466086 -79320369 + L2 LINE L2 2955 3263 -9 243 61 0 0 chr12 64466727 64466760 -79319695 + (CA)n Simple_repeat Simple_repeat 2 34 0 320 295 108 8 chr12 64467025 64467154 -79319301 + L2 LINE L2 3168 3309 -4 1964 125 10 7 chr12 64467258 64467547 -79318908 - AluSx SINE Alu -22 290 1 25 0 0 0 chr12 64468193 64468218 -79318237 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 64468766 64468796 -79317659 + AT_rich Low_complexity Low_complexity 1 30 0 498 274 135 19 chr12 64469122 64469330 -79317125 + MIR SINE MIR 30 261 -1 557 249 75 40 chr12 64469621 64469794 -79316661 + MER63A DNA MER1_type 29 207 -3 867 290 14 69 chr12 64470022 64470370 -79316085 + MER102b DNA MER1_type 2 330 -11 411 383 16 16 chr12 64470376 64470619 -79315836 + MIR SINE MIR 5 247 -15 1571 169 22 44 chr12 64471113 64471479 -79314976 + L1MA10 LINE L1 5976 6333 -1 37 23 0 0 chr12 64471595 64471639 -79314816 + AT_rich Low_complexity Low_complexity 1 44 0 713 349 12 18 chr12 64471639 64471977 -79314478 + L2 LINE L2 2466 2801 -513 364 315 0 0 chr12 64471966 64472058 -79314397 - L2 LINE L2 -45 3227 3136 * 185 163 139 0 chr12 64472303 64472346 -79314109 - L2 LINE L2 0 3313 3265 469 313 7 7 chr12 64472672 64472822 -79313633 - MIR SINE MIR -111 151 2 7630 23 1 0 chr12 64473216 64474793 -79311662 - L1PA2 LINE L1 0 6155 4579 6583 23 0 0 chr12 64474793 64475564 -79310891 + L1PA2 LINE L1 3816 4586 -1560 572 336 86 8 chr12 64475822 64476078 -79310377 - L3 LINE CR1 -84 1493 1218 21 0 0 0 chr12 64476409 64476430 -79310025 + AT_rich Low_complexity Low_complexity 1 21 0 331 268 153 66 chr12 64476588 64476816 -79309639 - MLT1K LTR MaLR -247 341 94 253 329 12 12 chr12 64477063 64477148 -79309307 + L2 LINE L2 3180 3264 -8 437 335 115 19 chr12 64477804 64478126 -79308329 - L2 LINE L2 -104 3209 2857 208 203 232 0 chr12 64478637 64478706 -79307749 - MIR SINE MIR -26 236 152 2425 196 65 47 chr12 64478706 64478764 -79307691 - LTR8 LTR ERV1 -62 629 574 1899 152 129 5 chr12 64478764 64479145 -79307310 - MSTA LTR MaLR 0 428 1 2425 196 65 47 chr12 64479145 64479704 -79306751 - LTR8 LTR ERV1 -117 574 1 276 278 0 41 chr12 64479710 64479807 -79306648 - MIR SINE MIR -141 121 29 727 217 71 33 chr12 64480091 64480431 -79306024 + MER31B LTR ERV1 1 466 0 290 275 160 15 chr12 64482555 64482686 -79303769 + MIR3 SINE MIR 50 199 -9 339 327 63 24 chr12 64482752 64482957 -79303498 - MIR SINE MIR -38 224 12 183 100 0 0 chr12 64483614 64483644 -79302811 + (CA)n Simple_repeat Simple_repeat 1 30 0 2083 113 0 30 chr12 64483674 64483974 -79302481 + AluSx SINE Alu 1 291 -21 559 346 144 29 chr12 64484708 64485471 -79300984 - L2 LINE L2 -606 2708 1858 466 306 102 48 chr12 64485943 64486335 -79300120 - L2 LINE L2 -1607 1707 1295 261 303 28 55 chr12 64486457 64486602 -79299853 + L2 LINE L2 2943 3083 -189 411 353 78 12 chr12 64487759 64487926 -79298529 + MIR3 SINE MIR 16 193 -15 613 314 147 21 chr12 64488296 64488726 -79297729 - MLT1J LTR MaLR -6 505 22 2742 119 33 0 chr12 64490134 64490564 -79295891 - L1PA14 LINE L1 -2 6159 5716 1960 206 21 48 chr12 64490688 64491207 -79295248 + MLT1D LTR MaLR 1 505 0 500 225 56 71 chr12 64492767 64493034 -79293421 - L1MC5 LINE L1 -426 7535 7273 310 179 36 0 chr12 64493047 64493131 -79293324 + CT-rich Low_complexity Low_complexity 2 88 0 309 224 35 0 chr12 64493143 64493228 -79293227 - L1MC5 LINE L1 -865 7096 7009 28 86 0 0 chr12 64493523 64493593 -79292862 + AT_rich Low_complexity Low_complexity 1 70 0 546 314 143 17 chr12 64493595 64493952 -79292503 + L1MC4a LINE L1 5506 5907 -1901 603 299 19 0 chr12 64493952 64494109 -79292346 - L2 LINE L2 -1128 2186 2027 1159 224 128 37 chr12 64494237 64494665 -79291790 + MLT1C LTR MaLR 1 467 0 794 341 36 10 chr12 64494986 64495294 -79291161 - L2 LINE L2 -1307 2007 1692 421 354 44 22 chr12 64495294 64495565 -79290890 + L2 LINE L2 2523 2799 -515 437 181 11 0 chr12 64495943 64496037 -79290418 + CT-rich Low_complexity Low_complexity 2 96 0 1802 160 7 14 chr12 64496038 64496326 -79290129 - AluJb SINE Alu -26 286 1 604 263 86 5 chr12 64496373 64496559 -79289896 + MIR SINE MIR 6 206 -56 231 262 60 24 chr12 64496878 64496962 -79289493 + MLT1J LTR MaLR 94 180 -331 254 300 70 99 chr12 64497502 64497845 -79288610 + MLT1J LTR MaLR 94 426 -85 1497 228 40 19 chr12 64497909 64498282 -79288173 + MER89 LTR ERV1 179 559 0 413 272 10 39 chr12 64498465 64498568 -79287887 - MER5A DNA MER1_type -79 110 11 25 0 0 0 chr12 64498726 64498751 -79287704 + AT_rich Low_complexity Low_complexity 1 25 0 1580 210 53 44 chr12 64499808 64500325 -79286130 + MER67C LTR ERV1 30 514 0 409 377 42 50 chr12 64500517 64500875 -79285580 - L2 LINE L2 -11 3261 2907 215 313 54 9 chr12 64500925 64501037 -79285418 + L2 LINE L2 2453 2569 -745 3600 162 2 5 chr12 64501194 64501806 -79284649 + MER4B LTR ERV1 1 610 0 539 321 92 0 chr12 64501808 64502026 -79284429 + L2 LINE L2 2541 2778 -536 433 267 90 55 chr12 64502351 64502606 -79283849 + L2 LINE L2 3050 3313 0 21 71 0 0 chr12 64502694 64502736 -79283719 + AT_rich Low_complexity Low_complexity 1 42 0 249 83 0 0 chr12 64504845 64504881 -79281574 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2133 110 37 0 chr12 64505548 64505847 -79280608 + AluSq SINE Alu 1 310 -3 755 146 0 8 chr12 64505890 64506020 -79280435 - L1PA16 LINE L1 -14 6152 6024 189 107 0 0 chr12 64506233 64506261 -79280194 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1306 267 121 25 chr12 64507437 64507882 -79278573 + MER69 DNA AcHobo 19 506 -2020 1706 184 8 52 chr12 64508054 64508435 -79278020 + MLT1A1 LTR MaLR 2 365 0 1350 291 41 35 chr12 64508573 64509254 -79277201 + LTR51 LTR ERV1 200 662 -9 23 97 0 0 chr12 64509421 64509493 -79276962 + AT_rich Low_complexity Low_complexity 1 72 0 287 247 37 25 chr12 64509961 64510042 -79276413 - L2 LINE L2 -20 3252 3171 2258 84 11 0 chr12 64510264 64510573 -79275882 - AluSg SINE Alu 0 312 1 21 57 0 0 chr12 64510579 64510614 -79275841 + AT_rich Low_complexity Low_complexity 1 35 0 1197 287 113 33 chr12 64510915 64511770 -79274685 - L2 LINE L2 0 3313 2380 622 201 0 37 chr12 64511803 64511937 -79274518 + FLAM_A SINE Alu 14 142 0 207 171 0 0 chr12 64511937 64511972 -79274483 + GA-rich Low_complexity Low_complexity 2 36 0 1161 189 76 31 chr12 64514896 64515222 -79271233 + MER67C LTR ERV1 1 341 -242 222 145 0 48 chr12 64515616 64515678 -79270777 + (TTC)n Simple_repeat Simple_repeat 1 59 0 456 201 188 32 chr12 64516074 64516228 -79270227 + MER5A DNA MER1_type 11 188 -1 3998 96 2 12 chr12 64516288 64516467 -79269988 - MER41A LTR ERV1 0 554 375 7819 58 15 3 chr12 64516467 64517462 -79268993 - LTR13 LTR ERVK 0 1007 1 3998 96 2 12 chr12 64517462 64517842 -79268613 - MER41A LTR ERV1 -179 375 1 226 259 106 12 chr12 64517866 64517883 -79268572 - MIR SINE MIR -111 151 137 195 42 0 0 chr12 64517883 64517907 -79268548 + (TG)n Simple_repeat Simple_repeat 1 24 0 226 259 106 12 chr12 64517907 64517974 -79268481 - MIR SINE MIR -125 137 59 * 343 295 74 1 chr12 64517971 64518117 -79268338 + MIR SINE MIR 35 189 -66 233 229 0 0 chr12 64518544 64518592 -79267863 + T-rich Low_complexity Low_complexity 3 50 0 186 103 0 0 chr12 64518883 64518912 -79267543 + (CA)n Simple_repeat Simple_repeat 1 29 0 1071 196 0 0 chr12 64520909 64521093 -79265362 - Tigger3(Golem) DNA MER2_type 0 3037 2854 2225 90 41 6 chr12 64521391 64521766 -79264689 + LTR7 LTR ERV1 1 448 -2 4308 197 24 57 chr12 64521768 64524085 -79262370 + HERVH LTR ERV1 1 2137 -4551 * 8079 102 4 7 chr12 64524072 64526388 -79260067 + HERVH LTR ERV1 2886 5225 -1866 2870 99 14 11 chr12 64526405 64526841 -79259614 + HERVH LTR ERV1 7277 7713 0 2269 86 41 6 chr12 64526841 64527216 -79259239 + LTR7 LTR ERV1 1 448 -2 3091 101 43 34 chr12 64527413 64527905 -79258550 - Tigger3(Golem) DNA MER2_type -182 2847 2348 6436 60 2 24 chr12 64527905 64528766 -79257689 + L1PA7 LINE L1 5297 6138 -16 3091 101 43 34 chr12 64528766 64528827 -79257628 - Tigger3(Golem) DNA MER2_type -681 2348 2289 346 224 0 103 chr12 64528828 64528888 -79257567 - Tigger3(Golem) DNA MER2_type -2921 108 43 243 0 0 0 chr12 64528888 64528915 -79257540 + (TG)n Simple_repeat Simple_repeat 2 28 0 346 224 0 103 chr12 64528915 64528930 -79257525 - Tigger3(Golem) DNA MER2_type -2986 43 28 1740 138 3 38 chr12 64528930 64529221 -79257234 - AluSx SINE Alu -17 295 15 346 224 0 103 chr12 64529221 64529251 -79257204 - Tigger3(Golem) DNA MER2_type -3001 28 13 28 29 0 0 chr12 64529546 64529581 -79256874 + AT_rich Low_complexity Low_complexity 1 35 0 268 262 111 87 chr12 64529968 64530043 -79256412 + MIR SINE MIR 64 145 -117 324 23 0 0 chr12 64530043 64530086 -79256369 - L1PA8 LINE L1 -4 6168 6126 268 262 111 87 chr12 64530086 64530136 -79256319 + MIR SINE MIR 145 192 -70 210 183 42 0 chr12 64532341 64532412 -79254043 + (TA)n Simple_repeat Simple_repeat 1 74 0 407 309 108 32 chr12 64532806 64533055 -79253400 + MLT1J2 LTR MaLR 167 434 -16 1565 183 48 3 chr12 64535998 64536164 -79250291 - AluJo SINE Alu -10 302 116 195 42 0 0 chr12 64536164 64536188 -79250267 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 1565 183 48 3 chr12 64536188 64536310 -79250145 - AluJo SINE Alu -196 116 1 1339 222 88 39 chr12 64536624 64537057 -79249398 - MSTB2 LTR MaLR -1 456 3 519 17 0 0 chr12 64537095 64537155 -79249300 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 231 31 0 chr12 64538219 64538284 -79248171 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 5081 206 45 26 chr12 64538316 64538479 -79247976 - L1MA7 LINE L1 -1 6876 6718 952 191 12 0 chr12 64538479 64538641 -79247814 + FAM SINE Alu 1 164 -11 5081 206 45 26 chr12 64538641 64540400 -79246055 - L1MA7 LINE L1 -159 6718 4900 1777 174 16 13 chr12 64540400 64540705 -79245750 + AluSx SINE Alu 1 306 -6 5081 206 45 26 chr12 64540705 64541039 -79245416 - L1MA7 LINE L1 -1977 4900 4574 1496 193 21 11 chr12 64541042 64541322 -79245133 + MSTB LTR MaLR 1 283 -143 4091 230 45 58 chr12 64541322 64543149 -79243306 - L1MA7 LINE L1 -2700 4032 2114 1946 127 4 0 chr12 64543149 64543446 -79243009 - AluSx SINE Alu 0 312 24 4091 230 45 58 chr12 64543446 64544611 -79241844 - L1MA7 LINE L1 -4618 2114 935 369 286 76 25 chr12 64544633 64544752 -79241703 - L1MA7 LINE L1 -6282 371 247 261 314 57 0 chr12 64544746 64544816 -79241639 - L1M3de LINE L1 -5638 1015 942 * 1258 303 67 25 chr12 64544846 64545512 -79240943 - L1M3de LINE L1 -5580 1073 572 3692 190 48 1 chr12 64546098 64546788 -79239667 - MER44D DNA MER2_type -9 596 3 344 262 93 9 chr12 64547174 64547281 -79239174 - L2 LINE L2 -8 3264 3149 332 279 70 0 chr12 64547532 64547618 -79238837 + L2 LINE L2 3169 3260 -12 246 173 0 39 chr12 64547574 64547626 -79238829 + MIR SINE MIR 213 262 0 * 351 0 0 0 chr12 64548450 64548489 -79237966 + (CA)n Simple_repeat Simple_repeat 2 40 0 246 156 0 0 chr12 64549172 64549217 -79237238 + (TA)n Simple_repeat Simple_repeat 1 45 0 2129 122 0 16 chr12 64550336 64550648 -79235807 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr12 64550871 64550893 -79235562 + AT_rich Low_complexity Low_complexity 1 22 0 1175 94 0 12 chr12 64551119 64551289 -79235166 - L1PA13 LINE L1 -44 6119 5952 305 138 0 0 chr12 64551289 64551336 -79235119 + L1PA13 LINE L1 6106 6163 0 3141 195 19 10 chr12 64551429 64551587 -79234868 - L1 LINE L1 -1680 4466 4311 2767 13 0 0 chr12 64551587 64551893 -79234562 - AluYa5 SINE Alu -5 306 1 3141 195 19 10 chr12 64551893 64552432 -79234023 - L1 LINE L1 -1835 4311 3763 * 3739 214 41 6 chr12 64552428 64553831 -79232624 + L1PB4 LINE L1 4470 5949 -207 2658 162 9 31 chr12 64553661 64554204 -79232251 + L1MA9 LINE L1 5782 6312 0 * 10550 219 45 23 chr12 64554360 64554812 -79231643 + L1MA4A LINE L1 3 444 -6404 2117 119 3 3 chr12 64554812 64555106 -79231349 + AluSg SINE Alu 1 294 -16 10550 219 45 23 chr12 64555106 64559908 -79226547 + L1MA4A LINE L1 444 5375 -1473 3576 67 9 2 chr12 64559908 64560354 -79226101 + LTR22A LTR ERVK 10 458 0 4367 182 15 7 chr12 64560354 64561740 -79224715 + L1MA4A LINE L1 5368 6831 -174 1839 151 28 0 chr12 64561740 64562024 -79224431 + AluSx SINE Alu 1 292 -20 4367 182 15 7 chr12 64562024 64562177 -79224278 + L1MA4A LINE L1 6831 6981 -24 24 67 0 0 chr12 64562505 64562550 -79223905 + AT_rich Low_complexity Low_complexity 1 45 0 476 170 0 52 chr12 64562590 64562725 -79223730 + L1MA4 LINE L1 6869 6996 -6 283 216 0 34 chr12 64562962 64563050 -79223405 - L1M4 LINE L1 -3118 3028 2944 21 0 0 0 chr12 64563887 64563908 -79222547 + AT_rich Low_complexity Low_complexity 1 21 0 880 265 138 90 chr12 64564054 64564507 -79221948 - MLT1G3 LTR MaLR -22 520 11 820 184 84 21 chr12 64564724 64564855 -79221600 - Charlie5 DNA MER1_type 0 2624 2503 5146 108 16 29 chr12 64564855 64565300 -79221155 - MER4E LTR ERV1 0 779 347 1920 107 82 0 chr12 64565300 64565580 -79220875 + AluSg SINE Alu 2 304 -6 5146 108 16 29 chr12 64565580 64565923 -79220532 - MER4E LTR ERV1 -432 347 1 820 184 84 21 chr12 64565923 64566030 -79220425 - Charlie5 DNA MER1_type -121 2503 2371 228 349 104 0 chr12 64566071 64566177 -79220278 + L2 LINE L2 3150 3266 -6 1074 93 0 0 chr12 64566614 64566754 -79219701 - AluSg/x SINE Alu -17 295 156 266 323 81 0 chr12 64566815 64567001 -79219454 - HAL1b LINE L1 -746 602 402 200 367 17 0 chr12 64567368 64567428 -79219027 + MER91 DNA MER1_type 65 125 -71 495 272 6 41 chr12 64567965 64568134 -79218321 - L1ME2 LINE L1 -11 6087 5925 1972 232 154 34 chr12 64568146 64569782 -79216673 - L1ME2 LINE L1 -235 5863 4032 323 298 61 35 chr12 64569785 64570775 -79215680 - L1ME2 LINE L1 -5048 1034 31 500 287 30 50 chr12 64570804 64571104 -79215351 - L1MC5 LINE L1 -475 7486 7193 3535 162 36 16 chr12 64571152 64571764 -79214691 + MER51A LTR ERV1 2 625 -9 1545 206 53 59 chr12 64572220 64572726 -79213729 + MLT1D LTR MaLR 1 503 -2 1150 257 87 22 chr12 64572728 64573359 -79213096 - L1MC5 LINE L1 -41 7920 7249 2753 159 16 43 chr12 64573526 64574086 -79212369 - L1PB4 LINE L1 -2 6154 5610 638 314 75 30 chr12 64574230 64575173 -79211282 - L1MEc LINE L1 -4604 1792 807 673 143 0 0 chr12 64575587 64575692 -79210763 - AluSp/q SINE Alu -3 310 206 183 311 14 54 chr12 64576540 64576614 -79209841 - L3 LINE CR1 -1161 416 346 458 177 13 0 chr12 64577547 64577626 -79208829 + MER20 DNA MER1_type 140 219 0 279 264 47 28 chr12 64577697 64577803 -79208652 - MIR SINE MIR -34 228 121 2135 113 0 27 chr12 64577870 64578171 -79208284 - AluSx SINE Alu -19 293 1 208 308 22 11 chr12 64578496 64578587 -79207868 - MIR SINE MIR -71 191 100 471 63 0 0 chr12 64580214 64580277 -79206178 + (CA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr12 64580959 64580980 -79205475 + AT_rich Low_complexity Low_complexity 1 21 0 3546 171 29 13 chr12 64581747 64582445 -79204010 + MER67C LTR ERV1 2 710 0 823 205 74 21 chr12 64582940 64583156 -79203299 + AluJo SINE Alu 86 311 0 1593 182 0 25 chr12 64583196 64583515 -79202940 + AluJb SINE Alu 4 315 0 2031 119 11 0 chr12 64584874 64585160 -79201295 + AluJb SINE Alu 16 304 -8 296 224 35 35 chr12 64585711 64585796 -79200659 + MER117 DNA MER1_type 4 88 -109 329 153 32 16 chr12 64586702 64586826 -79199629 + T-rich Low_complexity Low_complexity 2 127 0 225 0 0 0 chr12 64586975 64587000 -79199455 + (TC)n Simple_repeat Simple_repeat 2 26 0 2448 80 0 3 chr12 64587021 64587323 -79199132 - AluSx SINE Alu -11 301 1 395 290 178 18 chr12 64587334 64587503 -79198952 + MIR SINE MIR 53 248 -14 1400 160 36 16 chr12 64587585 64587835 -79198620 - MSTB LTR MaLR -16 410 156 25 0 0 0 chr12 64588148 64588173 -79198282 + AT_rich Low_complexity Low_complexity 1 25 0 255 61 0 0 chr12 64588207 64588240 -79198215 + (A)n Simple_repeat Simple_repeat 1 33 0 534 158 74 0 chr12 64588371 64588466 -79197989 + MLT1A1 LTR MaLR 1 102 -263 2537 149 123 13 chr12 64588466 64589002 -79197453 - LTR49 LTR ERV1 0 595 1 1677 128 46 7 chr12 64589003 64589284 -79197171 - LTR49-int LTR ERV1 -1 6330 6039 843 139 0 0 chr12 64589284 64589413 -79197042 - MSTB LTR MaLR -297 129 1 300 213 0 0 chr12 64589443 64589504 -79196951 - LTR29 LTR ERV1 -175 447 387 * 405 158 26 0 chr12 64589473 64589549 -79196906 - LTR49 LTR ERV1 -251 344 267 12439 151 25 18 chr12 64589575 64591669 -79194786 - LTR49-int LTR ERV1 -293 6038 3926 203 0 0 36 chr12 64591669 64591697 -79194758 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 12439 151 25 18 chr12 64591697 64591914 -79194541 - LTR49-int LTR ERV1 -2405 3926 3712 2033 190 60 0 chr12 64591937 64592321 -79194134 + MSTA LTR MaLR 1 407 -21 23603 183 16 37 chr12 64592322 64594547 -79191908 - L1PA8A LINE L1 -13 6433 4162 2140 141 0 0 chr12 64594547 64594852 -79191603 + AluSx SINE Alu 1 305 -7 23603 183 16 37 chr12 64594852 64599167 -79187288 - L1PA8A LINE L1 -2284 4162 10 266 191 0 0 chr12 64599168 64599215 -79187240 + MSTA LTR MaLR 380 426 0 3790 183 53 67 chr12 64599215 64600251 -79186204 - LTR49-int LTR ERV1 -2592 3739 2718 239 188 0 0 chr12 64600251 64600299 -79186156 + MER54B LTR ERVL 746 793 0 3313 224 37 42 chr12 64600338 64601205 -79185250 - LTR49-int LTR ERV1 -3673 2658 752 4433 191 39 60 chr12 64601207 64602631 -79183824 - LTR49-int LTR ERV1 -4565 1766 355 2107 182 57 26 chr12 64602642 64603160 -79183295 - MLT2A2 LTR ERVL 0 554 1 1658 164 36 33 chr12 64603162 64603467 -79182988 - LTR49-int LTR ERV1 -6025 306 1 2847 141 46 61 chr12 64603469 64604073 -79182382 - LTR49 LTR ERV1 0 595 1 294 250 26 13 chr12 64604073 64604149 -79182306 + MLT1A1 LTR MaLR 99 175 -190 2547 116 16 3 chr12 64604183 64604553 -79181902 - THE1C LTR MaLR 0 375 1 7262 109 49 173 chr12 64604553 64606355 -79180100 - THE1C-int LTR MaLR 0 1580 1 2568 117 3 3 chr12 64606355 64606730 -79179725 - THE1C LTR MaLR 0 375 1 3151 52 7 6 chr12 64606767 64607394 -79179061 + L1P1 LINE L1 5082 5709 -446 4386 31 0 0 chr12 64607581 64608122 -79178333 + L1PA3 LINE L1 5638 6178 0 1968 122 25 81 chr12 64608127 64608487 -79177968 - THE1C LTR MaLR -35 340 1 743 274 26 0 chr12 64608488 64608678 -79177777 + MLT1A1 LTR MaLR 170 364 -1 24 53 0 0 chr12 64609050 64609088 -79177367 + AT_rich Low_complexity Low_complexity 1 38 0 183 80 0 0 chr12 64613436 64613461 -79172994 + (TA)n Simple_repeat Simple_repeat 2 26 0 623 285 92 18 chr12 64613718 64613946 -79172509 + MIR SINE MIR 15 259 -3 21 0 0 0 chr12 64614783 64614804 -79171651 + AT_rich Low_complexity Low_complexity 1 21 0 2486 126 0 0 chr12 64615986 64616350 -79170105 + THE1B LTR MaLR 1 364 0 5320 164 30 0 chr12 64616848 64617967 -79168488 - L1PB3 LINE L1 0 6154 5001 * 5715 229 18 15 chr12 64617965 64619461 -79166994 + L1 LINE L1 2189 3688 -2458 2134 108 3 0 chr12 64620796 64621083 -79165372 + AluSg SINE Alu 1 288 -22 26 50 0 0 chr12 64621347 64621387 -79165068 + AT_rich Low_complexity Low_complexity 1 40 0 299 310 152 18 chr12 64621751 64621922 -79164533 - MIR SINE MIR -65 197 4 3861 111 23 12 chr12 64623153 64623759 -79162696 - L1PA10 LINE L1 0 6168 5556 5740 129 29 17 chr12 64623759 64624931 -79161524 + L1PA10 LINE L1 4380 5557 -611 1009 171 5 9 chr12 64624934 64625145 -79161310 - L1MC/D LINE L1 -875 5484 5275 30 0 0 0 chr12 64675899 64675929 -79110526 + AT_rich Low_complexity Low_complexity 1 30 0 608 80 0 0 chr12 64676032 64676120 -79110335 + L1PA4 LINE L1 6065 6152 -3 302 313 80 7 chr12 64676122 64676272 -79110183 - MIR SINE MIR -1 261 101 550 307 53 22 chr12 64676898 64677123 -79109332 - MIR SINE MIR -3 259 28 32 75 0 0 chr12 64677356 64677423 -79109032 + AT_rich Low_complexity Low_complexity 1 67 0 1792 146 95 15 chr12 64678387 64678723 -79107732 + THE1B LTR MaLR 1 363 -1 11812 92 1 1 chr12 64678725 64680305 -79106150 + THE1B-int LTR MaLR 2 1580 0 1952 121 79 53 chr12 64680305 64680660 -79105795 + THE1B LTR MaLR 1 364 0 220 239 45 30 chr12 64680995 64681062 -79105393 + L2 LINE L2 3198 3265 -7 482 300 55 62 chr12 64681375 64681632 -79104823 + MIR SINE MIR 8 262 0 874 275 41 33 chr12 64682858 64683252 -79103203 + MLT1J1 LTR MaLR 64 446 0 375 203 365 0 chr12 64683430 64683578 -79102877 - MIR SINE MIR -8 254 53 2733 184 121 6 chr12 64684225 64684752 -79101703 + LTR69 LTR ERVL 1 588 0 2104 134 0 0 chr12 64684792 64685091 -79101364 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 64685141 64685162 -79101293 + AT_rich Low_complexity Low_complexity 1 21 0 275 236 128 14 chr12 64685435 64685583 -79100872 - L1P5 LINE L1 -708 5443 5279 778 295 43 0 chr12 64685912 64686119 -79100336 + MIR SINE MIR 3 218 -44 574 333 19 73 chr12 64686386 64686790 -79099665 - L2 LINE L2 -309 3004 2624 2485 202 20 24 chr12 64686790 64687289 -79099166 + MLT1D LTR MaLR 1 497 -8 534 277 116 107 chr12 64687292 64687606 -79098849 - L2 LINE L2 -685 2629 2308 2320 65 10 0 chr12 64687606 64687898 -79098557 + AluY SINE Alu 1 295 -16 534 277 116 107 chr12 64687898 64688024 -79098431 - L2 LINE L2 -1006 2308 2185 523 265 97 11 chr12 64688032 64688217 -79098238 - L2 LINE L2 -18 3295 3095 4536 83 6 6 chr12 64688243 64688878 -79097577 - L1PA14 LINE L1 -6 6155 5521 287 206 59 0 chr12 64688962 64689030 -79097425 - L2 LINE L2 -205 3067 2996 212 302 66 38 chr12 64689369 64689528 -79096927 + MIR3 SINE MIR 1 164 -68 293 226 60 12 chr12 64690541 64690625 -79095830 + MIR SINE MIR 68 155 -107 295 109 35 0 chr12 64690660 64690711 -79095744 + Alu SINE Alu 249 289 -13 324 0 0 0 chr12 64690712 64690748 -79095707 + (CA)n Simple_repeat Simple_repeat 2 37 0 213 287 197 8 chr12 64691063 64691185 -79095270 - MIR SINE MIR -66 196 52 283 139 23 35 chr12 64692739 64692825 -79093630 + GA-rich Low_complexity Low_complexity 2 86 0 220 359 160 6 chr12 64692920 64693076 -79093379 + MIR3 SINE MIR 16 195 -13 333 0 0 0 chr12 64693350 64693387 -79093068 + (CA)n Simple_repeat Simple_repeat 2 38 0 222 274 0 0 chr12 64693702 64693753 -79092702 + GA-rich Low_complexity Low_complexity 3 53 0 982 182 0 0 chr12 64695393 64695558 -79090897 - FRAM SINE Alu -1 165 1 1367 242 61 24 chr12 64696100 64696639 -79089816 + MLT1E LTR MaLR 11 593 0 187 333 71 30 chr12 64696937 64697036 -79089419 - L2 LINE L2 0 3313 3211 21 36 0 0 chr12 64698013 64698041 -79088414 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr12 64698560 64698585 -79087870 + (TG)n Simple_repeat Simple_repeat 2 26 0 228 86 0 0 chr12 64698974 64699009 -79087446 + (TC)n Simple_repeat Simple_repeat 1 35 0 711 270 224 27 chr12 64699171 64699582 -79086873 + MLT1J LTR MaLR 5 496 -15 271 256 23 23 chr12 64699882 64699968 -79086487 - MER103 DNA DNA -43 123 38 269 391 94 7 chr12 64700055 64700193 -79086262 - L3 LINE CR1 -48 1529 1380 25 31 0 0 chr12 64701912 64701944 -79084511 + AT_rich Low_complexity Low_complexity 1 32 0 574 181 36 5 chr12 64702254 64702380 -79084075 + L1M3 LINE L1 5668 5798 -370 278 50 25 0 chr12 64702404 64702444 -79084011 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 341 109 62 0 chr12 64702452 64702516 -79083939 - L1P5 LINE L1 -365 5791 5724 327 146 0 0 chr12 64702547 64702602 -79083853 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 1717 159 19 7 chr12 64702602 64702910 -79083545 + L1PB4 LINE L1 5776 6087 -69 296 312 128 14 chr12 64703282 64703423 -79083032 + MIR SINE MIR 76 232 -30 1541 52 0 0 chr12 64703922 64704115 -79082340 - L1PA5 LINE L1 0 6154 5962 24 32 0 0 chr12 64704199 64704230 -79082225 + AT_rich Low_complexity Low_complexity 1 31 0 1337 229 93 58 chr12 64704235 64704859 -79081596 + MLT1G LTR MaLR 1 590 0 206 227 64 82 chr12 64705022 64705132 -79081323 + L2 LINE L2 1749 1856 -1458 209 219 0 0 chr12 64705157 64705198 -79081257 - L2 LINE L2 -4 3309 3269 440 93 41 0 chr12 64705223 64705320 -79081135 + (TA)n Simple_repeat Simple_repeat 1 101 0 23 33 0 0 chr12 64705769 64705799 -79080656 + AT_rich Low_complexity Low_complexity 1 30 0 320 323 169 10 chr12 64706076 64706213 -79080242 - MER5A DNA MER1_type -7 182 11 302 234 0 39 chr12 64706316 64706393 -79080062 - MIR SINE MIR -22 240 167 366 255 280 0 chr12 64707345 64707584 -79078871 - L1ME4a LINE L1 0 6121 5816 793 125 0 23 chr12 64707602 64707730 -79078725 - L1PA16 LINE L1 -16 6150 6026 236 287 33 41 chr12 64707896 64708018 -79078437 - L1ME4a LINE L1 -399 5722 5602 430 340 28 0 chr12 64708023 64708164 -79078291 - L2 LINE L2 -1 3312 3168 267 173 0 0 chr12 64708954 64709006 -79077449 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr12 64709196 64709225 -79077230 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr12 64709235 64709277 -79077178 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr12 64709297 64709322 -79077133 + AT_rich Low_complexity Low_complexity 1 25 0 277 348 34 17 chr12 64709849 64709967 -79076488 - L2 LINE L2 -9 3304 3185 201 328 0 0 chr12 64710078 64710139 -79076316 - L2 LINE L2 -226 3046 2986 232 185 19 56 chr12 64710919 64710973 -79075482 - L2 LINE L2 0 3313 3262 654 185 170 0 chr12 64711072 64711207 -79075248 + MER20 DNA MER1_type 62 219 0 203 345 18 0 chr12 64711330 64711385 -79075070 - L2 LINE L2 -81 3191 3136 2984 140 75 7 chr12 64711548 64712104 -79074351 + L1PA16 LINE L1 5571 6164 -2 256 359 44 13 chr12 64712170 64712329 -79074126 - L2 LINE L2 -325 2988 2825 1950 168 20 0 chr12 64713588 64713933 -79072522 - L1 LINE L1 -1211 4935 4584 813 161 92 0 chr12 64713931 64714105 -79072350 + L1MA6 LINE L1 6110 6299 -1 * 21 36 0 0 chr12 64714922 64714950 -79071505 + AT_rich Low_complexity Low_complexity 1 28 0 371 274 70 143 chr12 64715723 64716165 -79070290 + L3 LINE CR1 1155 1564 -13 291 160 20 0 chr12 64719572 64719622 -79066833 + L2 LINE L2 3263 3313 0 24 85 0 0 chr12 64720941 64721000 -79065455 + AT_rich Low_complexity Low_complexity 1 59 0 2110 105 7 7 chr12 64721070 64721365 -79065090 - AluSx SINE Alu -17 295 1 253 329 47 40 chr12 64721366 64721515 -79064940 - MIR SINE MIR -34 228 79 734 189 84 48 chr12 64722247 64722474 -79063981 + MER106A DNA MER1_type 1 235 -1 201 145 53 66 chr12 64722559 64722635 -79063820 + (TTATA)n Simple_repeat Simple_repeat 2 76 0 233 291 111 62 chr12 64723270 64723514 -79062941 - L2 LINE L2 -50 3263 3008 343 354 179 23 chr12 64723564 64723716 -79062739 - L2 LINE L2 -383 2931 2804 2501 65 3 0 chr12 64723716 64724026 -79062429 + AluY SINE Alu 1 311 0 343 354 179 23 chr12 64724026 64724147 -79062308 - L2 LINE L2 -510 2804 2703 2341 80 7 0 chr12 64724147 64724447 -79062008 + AluSp SINE Alu 1 302 -11 343 354 179 23 chr12 64724447 64724646 -79061809 - L2 LINE L2 -611 2703 2384 1643 160 39 0 chr12 64725121 64725427 -79061028 + L1MA9 LINE L1 5991 6308 -4 858 286 157 65 chr12 64725773 64726360 -79060095 + HAL1 LINE L1 259 899 -1608 1786 265 69 34 chr12 64726429 64727243 -79059212 + HAL1 LINE L1 1038 1879 -628 27 0 0 0 chr12 64727863 64727890 -79058565 + AT_rich Low_complexity Low_complexity 1 27 0 205 326 11 45 chr12 64728382 64728471 -79057984 - MIR SINE MIR -170 92 7 316 238 103 32 chr12 64728671 64728797 -79057658 + L1ME LINE L1 5461 5595 -526 398 289 19 6 chr12 64728966 64729122 -79057333 + L1ME LINE L1 5617 5774 -347 22 35 0 0 chr12 64729310 64729339 -79057116 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 64729531 64729552 -79056903 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 64729591 64729612 -79056843 + AT_rich Low_complexity Low_complexity 1 21 0 229 150 0 0 chr12 64729793 64729833 -79056622 + LTR33A LTR ERVL 65 104 -419 807 295 20 8 chr12 64729838 64730082 -79056373 + LTR16B LTR ERVL 204 450 -14 358 299 107 11 chr12 64730397 64730574 -79055881 + LTR33A LTR ERVL 330 523 0 267 24 0 24 chr12 64730660 64730702 -79055753 - L1PA3 LINE L1 -1 6154 6114 252 59 29 0 chr12 64730701 64730735 -79055720 + L1P2 LINE L1 5578 5612 -542 * 564 299 75 24 chr12 64730926 64731257 -79055198 + L1ME4a LINE L1 5594 5941 -229 1878 120 31 50 chr12 64731258 64731640 -79054815 - THE1C LTR MaLR 0 375 1 2388 88 0 0 chr12 64731655 64731963 -79054492 - AluSg SINE Alu -2 308 1 252 320 47 0 chr12 64732368 64732496 -79053959 + L1ME4a LINE L1 5971 6104 -17 450 294 114 101 chr12 64732814 64733179 -79053276 + L2 LINE L2 2842 3201 -112 1774 170 7 3 chr12 64733179 64733473 -79052982 - AluSx SINE Alu -17 295 1 1657 164 40 24 chr12 64733478 64733776 -79052679 - AluJo SINE Alu -9 303 1 450 294 114 101 chr12 64733776 64733870 -79052585 + L2 LINE L2 3204 3313 0 432 174 0 11 chr12 64733963 64734055 -79052400 + L1MA6 LINE L1 6210 6300 0 540 308 146 19 chr12 64734850 64735227 -79051228 + L2 LINE L2 2833 3257 -56 329 329 44 56 chr12 64735305 64735624 -79050831 + ERVL LTR ERVL 4876 5190 -574 1349 244 42 31 chr12 64735900 64736351 -79050104 + LTR16A1 LTR ERVL 1 456 -1 254 333 7 47 chr12 64736357 64736507 -79049948 + L1MEd LINE L1 607 750 -5369 290 184 0 32 chr12 64736550 64736675 -79049780 + (TA)n Simple_repeat Simple_repeat 2 122 0 2415 44 0 0 chr12 64736741 64737016 -79049439 + AluY SINE Alu 29 303 -8 190 211 105 0 chr12 64737017 64737074 -79049381 + MIR SINE MIR 160 222 -40 1220 220 145 61 chr12 64737074 64737502 -79048953 + LTR68 LTR ERV1 1 464 -276 182 174 22 0 chr12 64737615 64737661 -79048794 + GA-rich Low_complexity Low_complexity 4 50 0 200 31 62 0 chr12 64739105 64739137 -79047318 + T-rich Low_complexity Low_complexity 2 35 0 180 77 0 0 chr12 64739156 64739182 -79047273 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 813 59 0 0 chr12 64739182 64739283 -79047172 - L1PA4 LINE L1 -24 6131 6031 21 0 0 0 chr12 64739652 64739673 -79046782 + AT_rich Low_complexity Low_complexity 1 21 0 303 322 161 17 chr12 64740393 64740567 -79045888 - MIR SINE MIR -51 211 13 25 31 0 0 chr12 64740914 64740946 -79045509 + AT_rich Low_complexity Low_complexity 1 32 0 260 325 26 68 chr12 64741024 64741141 -79045314 + MIR SINE MIR 19 130 -132 718 304 53 18 chr12 64741419 64741646 -79044809 + MIR SINE MIR 28 262 0 181 350 91 21 chr12 64742407 64742593 -79043862 + L2 LINE L2 2485 2683 -631 * 250 268 18 0 chr12 64742571 64742627 -79043828 + L2 LINE L2 3179 3235 -37 1981 95 0 0 chr12 64744032 64744284 -79042171 + AluY SINE Alu 1 252 -59 437 307 129 51 chr12 64744683 64745084 -79041371 + L2 LINE L2 2671 3124 -189 180 0 0 0 chr12 64745084 64745104 -79041351 + (TC)n Simple_repeat Simple_repeat 1 20 0 437 307 129 51 chr12 64745104 64745311 -79041144 + L2 LINE L2 3124 3313 0 790 21 0 0 chr12 64745522 64745617 -79040838 - L1PA3 LINE L1 0 6155 6061 300 154 0 0 chr12 64750125 64750177 -79036278 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 1966 133 77 19 chr12 64750177 64750554 -79035901 + L1MB4 LINE L1 5781 6179 -1 603 263 28 47 chr12 64750620 64750833 -79035622 + L2 LINE L2 3105 3313 0 374 326 51 11 chr12 64751069 64751244 -79035211 - MIR SINE MIR -33 229 48 653 232 13 7 chr12 64751251 64751402 -79035053 + AluJb SINE Alu 138 289 -23 1497 191 115 6 chr12 64753451 64753765 -79032690 - MER7A DNA MER2_type 0 346 1 363 319 84 11 chr12 64753876 64754067 -79032388 - Charlie8 DNA MER1_type -2210 207 3 415 305 52 52 chr12 64754988 64755162 -79031293 + MIR SINE MIR 20 193 -69 293 233 155 39 chr12 64755242 64755345 -79031110 - L2 LINE L2 -6 3307 3193 180 320 67 0 chr12 64756140 64756215 -79030240 + MIR SINE MIR 174 253 -9 417 301 22 35 chr12 64757289 64757462 -79028993 - MIR SINE MIR -60 148 19 808 263 50 21 chr12 64759071 64759311 -79027144 + MIR SINE MIR 11 257 -5 380 297 8 0 chr12 64759522 64759640 -79026815 + MIR SINE MIR 122 240 -22 4171 24 0 4 chr12 64759657 64760148 -79026307 - L1PA2 LINE L1 -2 6153 5665 3008 6 0 0 chr12 64760148 64760485 -79025970 + L1PA2 LINE L1 5339 5675 -480 355 387 6 6 chr12 64761234 64761415 -79025040 + MIR SINE MIR 61 241 -21 235 280 112 9 chr12 64761667 64761774 -79024681 + L2 LINE L2 3190 3307 -6 29 0 0 0 chr12 64761863 64761892 -79024563 + AT_rich Low_complexity Low_complexity 1 29 0 347 304 48 48 chr12 64763235 64763442 -79023013 - L2 LINE L2 -10 3303 3097 360 135 0 0 chr12 64763476 64763550 -79022905 + (CAG)n Simple_repeat Simple_repeat 2 75 0 200 237 0 34 chr12 64763557 64763586 -79022869 + GA-rich Low_complexity Low_complexity 6 34 -28 2269 97 7 7 chr12 64763586 64763896 -79022559 + AluSp SINE Alu 1 310 -3 200 237 0 34 chr12 64763896 64763925 -79022530 + GA-rich Low_complexity Low_complexity 34 62 0 960 303 106 50 chr12 64763990 64764653 -79021802 - L2 LINE L2 -439 2875 2176 429 250 18 0 chr12 64764655 64764767 -79021688 - MER53 DNA DNA 0 189 76 1924 145 0 7 chr12 64764776 64765059 -79021396 + AluSx SINE Alu 1 281 -31 1175 287 126 43 chr12 64765224 64765869 -79020586 - L2 LINE L2 -1138 2176 1479 181 339 89 54 chr12 64767912 64768024 -79018431 + L2 LINE L2 3157 3272 0 239 232 12 61 chr12 64768231 64768313 -79018142 + GA-rich Low_complexity Low_complexity 5 82 0 1505 168 65 37 chr12 64769571 64769595 -79016860 - MER2 DNA MER2_type -14 331 309 2028 155 16 31 chr12 64769595 64769976 -79016479 - THE1C LTR MaLR 0 375 1 9303 125 37 34 chr12 64769978 64771551 -79014904 - THE1C-int LTR MaLR -2 1578 2 1953 154 37 42 chr12 64771552 64771929 -79014526 - THE1C LTR MaLR 0 375 1 1505 168 65 37 chr12 64771929 64772221 -79014234 - MER2 DNA MER2_type -35 310 1 1091 291 21 21 chr12 64772240 64772626 -79013829 - L1ME3A LINE L1 -323 5847 5459 2479 115 33 3 chr12 64772626 64772990 -79013465 - THE1C LTR MaLR 0 375 1 1091 291 21 21 chr12 64772990 64773040 -79013415 - L1ME3A LINE L1 -710 5460 5411 1369 6 0 0 chr12 64773498 64773659 -79012796 - L1HS LINE L1 0 6155 5995 198 0 0 0 chr12 64774313 64774335 -79012120 + (A)n Simple_repeat Simple_repeat 1 22 0 1083 321 97 35 chr12 64774628 64775518 -79010937 + L2 LINE L2 1927 2871 -443 386 206 114 80 chr12 64775643 64775818 -79010637 + L2 LINE L2 3133 3313 0 227 356 43 9 chr12 64776660 64776775 -79009680 - L2 LINE L2 -5 3308 3190 23 0 0 0 chr12 64777661 64777684 -79008771 + AT_rich Low_complexity Low_complexity 1 23 0 284 232 54 18 chr12 64778124 64778236 -79008219 - MER113 DNA MER1_type? -113 408 293 2765 96 0 3 chr12 64778422 64778787 -79007668 + THE1B LTR MaLR 1 364 0 9700 116 11 34 chr12 64778787 64780399 -79006056 + THE1B-int LTR MaLR 1 1574 -6 2273 129 11 50 chr12 64780404 64780783 -79005672 + THE1B LTR MaLR 1 364 0 249 364 104 22 chr12 64781552 64781868 -79004587 - L2 LINE L2 -1007 2307 1966 468 62 0 0 chr12 64782293 64782357 -79004098 + (TG)n Simple_repeat Simple_repeat 2 65 0 212 230 122 0 chr12 64782764 64782838 -79003617 - L2 LINE L2 -48 3224 3142 607 244 62 17 chr12 64784257 64784433 -79002022 - MIR SINE MIR -26 236 53 327 211 14 0 chr12 64784501 64784572 -79001883 + MER3 DNA MER1_type 40 111 -98 472 206 68 7 chr12 64784576 64784722 -79001733 + MER3 DNA MER1_type 2469 2623 0 195 344 109 23 chr12 64786921 64787049 -78999406 - L2 LINE L2 0 3272 3134 2134 129 7 7 chr12 64787102 64787411 -78999044 + AluSx SINE Alu 1 309 -3 364 353 97 38 chr12 64787539 64787656 -78998799 - L3 LINE CR1 -146 1431 1322 2392 213 58 30 chr12 64787656 64788195 -78998260 - MLT2B3 LTR ERVL 0 554 1 364 353 97 38 chr12 64788195 64788417 -78998038 - L3 LINE CR1 -255 1322 1072 486 263 29 49 chr12 64788456 64788695 -78997760 + MIR SINE MIR 33 262 0 22 35 0 0 chr12 64789522 64789551 -78996904 + AT_rich Low_complexity Low_complexity 1 29 0 447 298 82 13 chr12 64789610 64789768 -78996687 - L3 LINE CR1 -77 1500 1332 4411 109 31 14 chr12 64790240 64790958 -78995497 - L1MA3 LINE L1 0 6305 5576 363 322 0 17 chr12 64790967 64791082 -78995373 - MER5A DNA MER1_type -43 146 34 283 318 62 16 chr12 64790968 64791097 -78995358 + MER5A DNA MER1_type 55 189 0 * 345 252 0 89 chr12 64791140 64791275 -78995180 + MIR SINE MIR 101 223 -39 311 200 29 38 chr12 64791851 64792009 -78994446 + (TTATA)n Simple_repeat Simple_repeat 1 156 0 771 231 98 73 chr12 64792441 64792990 -78993465 + MER34B LTR ERV1 1 563 -2 2628 295 105 54 chr12 64793098 64794526 -78991929 - L2 LINE L2 -253 3060 1557 13414 144 13 108 chr12 64794530 64797894 -78988561 + L1PA7 LINE L1 12 3054 -3092 16292 92 9 2 chr12 64797894 64799012 -78987443 + L1PA7 LINE L1 2960 4069 -2085 2233 105 13 13 chr12 64799012 64799316 -78987139 + AluSc SINE Alu 1 304 -5 16292 92 9 2 chr12 64799316 64800521 -78985934 + L1PA7 LINE L1 4069 5322 -832 198 118 0 0 chr12 64800521 64800555 -78985900 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 16292 92 9 2 chr12 64800555 64801394 -78985061 + L1PA7 LINE L1 5322 6154 0 260 164 36 0 chr12 64801395 64801450 -78985005 - L2 LINE L2 -1739 1575 1519 7165 34 3 0 chr12 64801526 64802384 -78984071 + L1PA4 LINE L1 5292 6152 -3 330 340 43 7 chr12 64802617 64802758 -78983697 - MIR SINE MIR 0 262 117 21 0 0 0 chr12 64804267 64804288 -78982167 + AT_rich Low_complexity Low_complexity 1 21 0 1985 112 4 11 chr12 64804683 64804961 -78981494 - AluSg SINE Alu -34 276 1 184 295 45 98 chr12 64805239 64805351 -78981104 - L2 LINE L2 -2172 1142 1037 303 358 68 0 chr12 64805430 64805606 -78980849 + MIR SINE MIR 20 207 -55 1633 145 7 45 chr12 64805655 64805944 -78980511 + AluJo SINE Alu 5 282 -30 221 206 21 93 chr12 64805992 64806089 -78980366 - MIR SINE MIR 0 262 173 260 156 0 0 chr12 64806223 64806268 -78980187 - MIR SINE MIR -147 115 71 8091 188 23 11 chr12 64807945 64808506 -78977949 + L1PB3 LINE L1 3364 3917 -2237 2197 110 0 3 chr12 64808506 64808835 -78977620 + AluSx SINE Alu 1 328 0 8091 188 23 11 chr12 64808835 64810388 -78976067 + L1PB3 LINE L1 3917 5510 -644 351 149 0 0 chr12 64810388 64810462 -78975993 + L1PB3 LINE L1 6081 6154 0 8091 188 23 11 chr12 64810462 64810540 -78975915 + L1PB3 LINE L1 5510 5586 -568 649 143 0 18 chr12 64810541 64810653 -78975802 - L1PA15 LINE L1 -3 6162 6053 383 143 0 0 chr12 64810653 64810723 -78975732 + L1PA14 LINE L1 5956 6025 -136 3798 101 11 12 chr12 64810723 64811285 -78975170 + L1PB3 LINE L1 5583 6145 -9 223 340 165 10 chr12 64811723 64811820 -78974635 + MIR SINE MIR 34 145 -63 208 280 93 27 chr12 64812072 64812147 -78974308 + MIR SINE MIR 86 165 -97 333 200 207 52 chr12 64812262 64812397 -78974058 - L2 LINE L2 0 3313 3158 741 210 14 0 chr12 64812402 64812540 -78973915 + MER45A DNA AcHobo 1 140 -38 223 276 40 26 chr12 64812629 64812705 -78973750 + MER91A DNA MER1_type 1 77 -119 217 340 43 0 chr12 64812944 64813038 -78973417 - L2 LINE L2 -277 3036 2939 427 200 42 0 chr12 64813140 64813235 -78973220 + Charlie5 DNA MER1_type 7 105 -2507 1146 210 66 3 chr12 64813238 64813604 -78972851 + Charlie5 DNA MER1_type 2236 2624 0 31630 30 16 1 chr12 64813662 64819679 -78966776 + L1PA2 LINE L1 2 6142 -13 243 0 0 0 chr12 64819684 64819711 -78966744 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 265 354 101 32 chr12 64819835 64820112 -78966343 + L2 LINE L2 2972 3267 -5 644 251 103 20 chr12 64820352 64820547 -78965908 - MIR SINE MIR -10 252 42 1729 217 2 72 chr12 64821214 64821647 -78964808 + MLT2B1 LTR ERVL 1 403 -117 410 126 253 0 chr12 64821830 64821925 -78964530 + MLT2B1 LTR ERVL 397 515 0 4911 159 15 11 chr12 64822003 64822909 -78963546 - L1MB2 LINE L1 -27 6144 5231 286 341 89 0 chr12 64822934 64823057 -78963398 + L2 LINE L2 3121 3254 -18 29 47 0 0 chr12 64825137 64825180 -78961275 + AT_rich Low_complexity Low_complexity 1 43 0 1612 161 0 0 chr12 64826194 64826454 -78960001 - L1PB4 LINE L1 0 6156 5897 22 0 0 0 chr12 64826642 64826664 -78959791 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 0 0 chr12 64827543 64827827 -78958628 + AluSc SINE Alu 1 284 -25 26 50 0 0 chr12 64828060 64828100 -78958355 + AT_rich Low_complexity Low_complexity 1 40 0 210 273 0 0 chr12 64828517 64828572 -78957883 + (TA)n Simple_repeat Simple_repeat 2 56 0 1782 118 0 0 chr12 64828731 64828969 -78957486 - AluSx SINE Alu -38 274 37 1981 114 7 7 chr12 64829071 64829361 -78957094 + THE1A LTR MaLR 65 354 -1 6200 119 18 0 chr12 64829362 64830251 -78956204 + THE1A-int LTR MaLR 1 905 -675 422 305 92 17 chr12 64830969 64831143 -78955312 + MIR SINE MIR 48 234 -28 276 280 64 54 chr12 64831213 64831411 -78955044 + MIR SINE MIR 15 215 -47 271 330 161 0 chr12 64832163 64832381 -78954074 - MIR SINE MIR -1 261 9 2158 88 201 5 chr12 64832607 64832981 -78953474 - LTR7 LTR ERV1 -3 447 1 329 315 97 38 chr12 64832997 64833235 -78953220 - MIR SINE MIR -9 253 2 284 368 127 19 chr12 64833628 64833840 -78952615 - MIR SINE MIR -8 254 20 184 53 53 26 chr12 64833855 64833893 -78952562 + T-rich Low_complexity Low_complexity 2 40 0 1436 175 45 29 chr12 64833966 64834275 -78952180 + THE1C LTR MaLR 62 375 0 191 415 0 0 chr12 64834338 64834391 -78952064 - L2 LINE L2 -99 3173 3121 295 340 58 19 chr12 64834402 64834558 -78951897 - L2 LINE L2 -1 3271 3110 948 219 9 5 chr12 64834934 64835149 -78951306 + AluSg/x SINE Alu 97 312 0 342 0 0 0 chr12 64835151 64835189 -78951266 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 184 79 53 chr12 64836706 64836782 -78949673 + MLT1L LTR MaLR 1 78 -537 1735 129 157 57 chr12 64836795 64837215 -78949240 - MER31B LTR ERV1 -4 462 1 248 209 55 55 chr12 64837701 64837811 -78948644 - L1MC/D LINE L1 -1926 5882 5773 475 310 41 4 chr12 64837947 64838213 -78948242 - L1P5 LINE L1 -602 5549 5266 387 311 111 18 chr12 64838556 64839068 -78947387 - L1M4 LINE L1 -1331 4815 4256 918 192 6 6 chr12 64839382 64839549 -78946906 - FAM SINE Alu -10 175 9 200 379 97 0 chr12 64839861 64839964 -78946491 + L2 LINE L2 3146 3258 -14 * 232 273 19 91 chr12 64839938 64840092 -78946363 - MIR SINE MIR -11 251 109 2004 130 71 59 chr12 64840431 64840854 -78945601 - MSTA LTR MaLR 0 428 1 323 306 48 24 chr12 64841064 64841220 -78945235 - MIR SINE MIR -60 148 15 6229 68 20 0 chr12 64842269 64843163 -78943292 - L1PA7 LINE L1 -2 6152 5201 4304 103 9 2 chr12 64843163 64843806 -78942649 + L1PA7 LINE L1 4558 5205 -941 191 288 68 0 chr12 64844183 64844242 -78942213 - L2 LINE L2 0 3313 3251 199 266 16 117 chr12 64844246 64844374 -78942081 + L2 LINE L2 2942 3056 -216 1850 190 28 6 chr12 64844602 64844955 -78941500 + MLT1A1 LTR MaLR 3 363 -2 601 203 0 0 chr12 64845475 64845675 -78940780 - L1M3 LINE L1 -410 5761 5502 1414 190 35 65 chr12 64845687 64846055 -78940400 - MLT1A1 LTR MaLR -8 357 1 265 268 12 24 chr12 64846724 64846806 -78939649 - L2 LINE L2 0 3272 3192 429 256 28 67 chr12 64848136 64848316 -78938139 - MIR SINE MIR 0 262 90 187 349 23 12 chr12 64848504 64848590 -78937865 + MIR SINE MIR 166 252 -10 214 362 41 55 chr12 64849285 64849531 -78936924 - L2 LINE L2 -245 3027 2784 22 35 0 0 chr12 64849636 64849665 -78936790 + AT_rich Low_complexity Low_complexity 1 29 0 188 337 0 33 chr12 64850683 64850775 -78935680 - L2 LINE L2 -213 3059 2971 1143 35 0 0 chr12 64850874 64851015 -78935440 + L1PA4 LINE L1 6015 6155 0 2905 67 3 0 chr12 64851016 64851392 -78935063 + L1PA6 LINE L1 5770 6146 -8 828 262 19 58 chr12 64851393 64851592 -78934863 + L1M4 LINE L1 4751 4935 -1211 526 107 19 68 chr12 64851592 64851695 -78934760 - L1PA12 LINE L1 -2 6166 6069 828 262 19 58 chr12 64851695 64851804 -78934651 + L1M4 LINE L1 4935 5047 -1099 230 338 0 0 chr12 64851984 64852055 -78934400 + LTR33A LTR ERVL 450 520 -3 28 29 0 0 chr12 64852895 64852930 -78933525 + AT_rich Low_complexity Low_complexity 1 35 0 546 257 11 38 chr12 64853009 64853192 -78933263 + MER5B DNA MER1_type 1 178 0 546 244 76 41 chr12 64853238 64853410 -78933045 + MER5B DNA MER1_type 1 178 0 2630 123 70 49 chr12 64854549 64855029 -78931426 - L1MA9 LINE L1 -37 6275 5780 270 0 0 0 chr12 64855029 64855059 -78931396 + (TG)n Simple_repeat Simple_repeat 2 31 0 2630 123 70 49 chr12 64855059 64855146 -78931309 - L1MA9 LINE L1 -532 5780 5696 1594 136 10 39 chr12 64855257 64855565 -78930890 + L1MA9 LINE L1 6011 6309 -3 4268 54 27 4 chr12 64856051 64856605 -78929850 - L1PA5 LINE L1 0 6154 5588 395 297 118 24 chr12 64857552 64857764 -78928691 + MIR SINE MIR 31 262 0 267 268 3 87 chr12 64858118 64858280 -78928175 + MER5A DNA MER1_type 1 154 -35 200 270 75 121 chr12 64858160 64858334 -78928121 - MER5A DNA MER1_type -23 166 1 * 194 176 20 0 chr12 64859176 64859227 -78927228 + A-rich Low_complexity Low_complexity 4 55 0 11779 71 24 0 chr12 64859635 64861966 -78924489 + L1PA6 LINE L1 3808 6154 0 396 0 0 0 chr12 64862898 64862942 -78923513 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1865 103 0 4 chr12 64862943 64863196 -78923259 - AluSc SINE Alu -32 277 26 630 335 119 5 chr12 64863384 64863763 -78922692 + L2 LINE L2 2892 3313 0 293 244 85 12 chr12 64863767 64863849 -78922606 - L2 LINE L2 -48 3224 3137 2092 128 16 0 chr12 64865673 64865978 -78920477 - AluSx SINE Alu -2 310 1 1021 128 0 0 chr12 64865978 64866111 -78920344 - AluSq/x SINE Alu -177 135 3 182 115 0 0 chr12 64867389 64867415 -78919040 + L2 LINE L2 3238 3263 -9 31 44 0 0 chr12 64867861 64867906 -78918549 + AT_rich Low_complexity Low_complexity 1 45 0 219 156 0 44 chr12 64868061 64868106 -78918349 - L2 LINE L2 0 3313 3271 221 297 0 16 chr12 64869794 64869852 -78916603 - L2 LINE L2 -1 3312 3255 2485 48 20 0 chr12 64869852 64870147 -78916308 - AluY SINE Alu -10 301 1 182 271 0 51 chr12 64870199 64870258 -78916197 + MIR SINE MIR 165 220 -42 709 228 35 6 chr12 64870604 64870775 -78915680 + MIR SINE MIR 32 207 -55 190 315 43 22 chr12 64870938 64871030 -78915425 + L2 LINE L2 2717 2810 -504 2678 274 110 29 chr12 64871091 64872278 -78914177 + L2 LINE L2 1630 2913 -401 260 365 0 0 chr12 64872276 64872361 -78914094 + L2 LINE L2 3185 3269 -44 * 374 308 71 14 chr12 64872474 64872650 -78913805 - MIR SINE MIR -63 145 4 809 318 146 27 chr12 64873717 64874394 -78912061 + L2 LINE L2 1398 2155 -1159 847 307 84 38 chr12 64874394 64875142 -78911313 + L2 LINE L2 2520 3309 -4 916 156 19 149 chr12 64875175 64875483 -78910972 + L1MB8 LINE L1 5898 6165 -13 719 293 30 23 chr12 64876036 64876299 -78910156 + LTR16C LTR ERVL 210 474 -17 385 301 91 7 chr12 64876472 64876615 -78909840 - L2 LINE L2 0 3313 3159 318 259 59 12 chr12 64876637 64876722 -78909733 + L1MC4 LINE L1 6615 6703 -1339 613 350 66 10 chr12 64876786 64877223 -78909232 - L2 LINE L2 -256 3057 2590 730 251 128 0 chr12 64877991 64878210 -78908245 - MIR SINE MIR -5 257 11 438 282 38 0 chr12 64879133 64879264 -78907191 + MIR SINE MIR 95 230 -32 1346 236 45 87 chr12 64879905 64880435 -78906020 + L1ME3A LINE L1 5489 5996 -174 3656 126 2 11 chr12 64880751 64881282 -78905173 - MER1A DNA MER1_type 0 527 2 2441 272 39 8 chr12 64881858 64882579 -78903876 + L2 LINE L2 343 1085 -2229 1477 262 28 28 chr12 64882580 64883316 -78903139 + L2 LINE L2 2572 3296 -17 3085 186 22 16 chr12 64884158 64884824 -78901631 + L1MA9 LINE L1 5605 6274 -38 286 343 126 0 chr12 64885116 64885259 -78901196 - MIR3 SINE MIR -39 169 9 290 313 60 0 chr12 64885274 64885357 -78901098 - MIR SINE MIR -121 141 54 182 37 37 0 chr12 64885745 64885772 -78900683 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1059 274 112 39 chr12 64886572 64887036 -78899419 + L2 LINE L2 2816 3313 0 319 316 84 0 chr12 64887035 64887130 -78899325 + L3 LINE CR1 1468 1570 -7 * 2407 128 63 2 chr12 64887221 64887636 -78898819 - L1MA6 LINE L1 -1 6299 5860 291 315 102 9 chr12 64888866 64888974 -78897481 - L2 LINE L2 0 3272 3155 21 0 0 0 chr12 64889108 64889129 -78897326 + AT_rich Low_complexity Low_complexity 1 21 0 7473 89 16 170 chr12 64889651 64891284 -78895171 + SVA Other Other 4 1386 0 226 102 0 82 chr12 64891360 64891409 -78895046 + MIR SINE MIR 105 149 -113 1889 161 0 10 chr12 64893862 64894172 -78892283 + AluJb SINE Alu 1 307 -5 412 296 122 28 chr12 64894646 64894859 -78891596 + L2 LINE L2 3080 3312 -1 379 306 19 19 chr12 64895036 64895144 -78891311 - L2 LINE L2 0 3272 3165 1288 165 21 0 chr12 64895350 64895592 -78890863 + L1MB3 LINE L1 5937 6183 0 256 311 0 14 chr12 64896447 64896521 -78889934 + MIR SINE MIR 20 92 -170 242 269 130 19 chr12 64896527 64896635 -78889820 - MIR SINE MIR 0 262 143 403 277 113 14 chr12 64896646 64896787 -78889668 + MIR SINE MIR 96 250 -12 182 357 80 27 chr12 64896912 64897024 -78889431 - L2 LINE L2 -5 3267 3150 7545 25 7 0 chr12 64897980 64899342 -78887113 + L1PA4 LINE L1 4793 6149 -6 204 40 0 0 chr12 64899348 64899373 -78887082 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 24 67 0 0 chr12 64899417 64899462 -78886993 + AT_rich Low_complexity Low_complexity 1 45 0 297 377 42 37 chr12 64899883 64900148 -78886307 - L2 LINE L2 -229 3043 2780 1348 231 54 0 chr12 64900317 64900615 -78885840 + MER58B DNA MER1_type 27 340 -1 1356 99 5 0 chr12 64900800 64900992 -78885463 - L1PB1 LINE L1 0 6151 5959 386 338 7 7 chr12 64901727 64901863 -78884592 - L2 LINE L2 -493 2821 2686 191 36 36 0 chr12 64901993 64902021 -78884434 + (TAA)n Simple_repeat Simple_repeat 1 29 0 355 187 40 0 chr12 64902022 64902097 -78884358 - MIR SINE MIR -8 254 177 243 353 103 19 chr12 64902296 64902452 -78884003 - L2 LINE L2 -1 3271 3103 2676 145 18 15 chr12 64904000 64904685 -78881770 + L1PA16 LINE L1 5015 5702 -464 1669 117 4 0 chr12 64904685 64904933 -78881522 + L1PA16 LINE L1 5909 6157 -9 25 0 0 0 chr12 64905374 64905399 -78881056 + AT_rich Low_complexity Low_complexity 1 25 0 409 345 27 0 chr12 64907236 64907384 -78879071 - MIR SINE MIR -109 153 2 26 0 0 0 chr12 64908605 64908631 -78877824 + AT_rich Low_complexity Low_complexity 1 26 0 363 355 38 16 chr12 64908786 64908972 -78877483 - MIR SINE MIR -6 256 67 279 0 0 0 chr12 64909327 64909358 -78877097 + (TC)n Simple_repeat Simple_repeat 2 32 0 1544 314 186 9 chr12 64909689 64910430 -78876025 - L2 LINE L2 -2434 880 9 269 98 0 39 chr12 64910487 64910538 -78875917 - MIR SINE MIR -79 183 135 3259 67 0 67 chr12 64910610 64911086 -78875369 + MLT2A1 LTR ERVL 1 444 0 186 401 72 22 chr12 64911411 64911633 -78874822 + L3 LINE CR1 356 588 -989 495 138 0 0 chr12 64913439 64913519 -78872936 - MER116 DNA Mariner 0 80 1 565 324 52 97 chr12 64914711 64915198 -78871257 - L2 LINE L2 -4 3268 2809 841 239 0 52 chr12 64915198 64915245 -78871210 - MER20 DNA MER1_type 0 219 171 2674 29 3 0 chr12 64915245 64915555 -78870900 - AluY SINE Alu 0 311 1 841 239 0 52 chr12 64915555 64915737 -78870718 - MER20 DNA MER1_type -48 171 2 565 324 52 97 chr12 64915737 64915829 -78870626 - L2 LINE L2 -463 2809 2714 338 296 11 111 chr12 64917050 64917239 -78869216 + MER5A DNA MER1_type 19 188 -1 1149 211 108 12 chr12 64917530 64917862 -78868593 + L1MA9 LINE L1 5905 6268 -44 1173 211 0 9 chr12 64917869 64918162 -78868293 - MER2 DNA MER2_type -7 338 1 757 205 67 0 chr12 64919304 64919479 -78866976 - MER5A DNA MER1_type 0 189 2 222 343 14 0 chr12 64919645 64919715 -78866740 - MIR SINE MIR -187 75 5 1472 199 95 41 chr12 64919807 64920249 -78866206 + MLT1C LTR MaLR 1 466 -1 202 243 108 0 chr12 64920564 64920638 -78865817 - MIR SINE MIR -71 191 110 * 324 262 134 30 chr12 64920636 64920800 -78865655 - MIR SINE MIR -3 259 79 184 224 41 41 chr12 64921501 64921550 -78864905 - L3b LINE CR1 -11 1572 1524 408 40 0 0 chr12 64921917 64921967 -78864488 + (TG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr12 64922484 64922506 -78863949 + AT_rich Low_complexity Low_complexity 1 22 0 3828 35 0 0 chr12 64922683 64923139 -78863316 + L1PA4 LINE L1 5697 6152 -3 21 36 0 0 chr12 64923177 64923205 -78863250 + AT_rich Low_complexity Low_complexity 1 28 0 505 92 23 0 chr12 64926415 64926502 -78859953 - L1PA13 LINE L1 -5 6158 6070 305 321 107 0 chr12 64926755 64926927 -78859528 + MIR3 SINE MIR 15 205 -57 2217 115 23 47 chr12 64927638 64928022 -78858433 - THE1C LTR MaLR 0 375 1 2401 64 0 7 chr12 64929803 64930100 -78856355 + AluY SINE Alu 1 295 -16 745 242 19 6 chr12 64930274 64930435 -78856020 - MER63 DNA MER1_type -272 790 2 2090 117 0 0 chr12 64931656 64931978 -78854477 - AluSx SINE Alu 0 322 1 4277 74 7 2 chr12 64931980 64932549 -78853906 - L1PA11 LINE L1 -10 6164 5593 264 188 128 77 chr12 64932683 64932800 -78853655 - L2 LINE L2 -1 3271 3149 746 227 101 15 chr12 64933093 64933291 -78853164 - MIR SINE MIR -40 222 8 196 304 0 0 chr12 64933294 64933340 -78853115 - L2 LINE L2 -6 3266 3221 21 0 0 0 chr12 64933905 64933926 -78852529 + AT_rich Low_complexity Low_complexity 1 21 0 1032 218 24 10 chr12 64934912 64935118 -78851337 + Tigger5 DNA MER2_type 6 214 -2109 976 198 5 25 chr12 64935132 64935334 -78851121 + Tigger5 DNA MER2_type 1802 1999 -324 27 0 0 0 chr12 64935648 64935675 -78850780 + AT_rich Low_complexity Low_complexity 1 27 0 298 274 142 18 chr12 64935755 64935868 -78850587 - L2 LINE L2 0 3313 3187 4874 176 24 16 chr12 64935895 64935970 -78850485 + L1MB3 LINE L1 4963 5036 -1147 1924 138 133 21 chr12 64935970 64936355 -78850100 + MSTA LTR MaLR 1 428 0 233 29 0 29 chr12 64936363 64936398 -78850057 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4874 176 24 16 chr12 64936398 64937526 -78848929 + L1MB3 LINE L1 5042 6183 0 1147 308 86 20 chr12 64937628 64938135 -78848320 - L2 LINE L2 -272 3041 2492 474 259 7 15 chr12 64938135 64938270 -78848185 - MER94 DNA DNA 0 134 1 1147 308 86 20 chr12 64938270 64938312 -78848143 - L2 LINE L2 -821 2492 2454 22 0 0 0 chr12 64938806 64938828 -78847627 + AT_rich Low_complexity Low_complexity 1 22 0 261 57 0 0 chr12 64939071 64939106 -78847349 + (TC)n Simple_repeat Simple_repeat 2 36 0 198 239 0 0 chr12 64939749 64939820 -78846635 + GA-rich Low_complexity Low_complexity 2 72 0 218 271 0 0 chr12 64941237 64941285 -78845170 - L2 LINE L2 -10 3303 3256 1669 272 119 18 chr12 64942219 64942830 -78843625 + L2 LINE L2 1443 2115 -1199 224 346 0 13 chr12 64942822 64942900 -78843555 + L2 LINE L2 3237 3313 0 * 1199 298 25 25 chr12 64943776 64944263 -78842192 - MARNA DNA Mariner -57 529 43 1717 109 8 11 chr12 64944418 64944685 -78841770 + L1PB2 LINE L1 5884 6149 -2 23 33 0 0 chr12 64944685 64944715 -78841740 + AT_rich Low_complexity Low_complexity 1 30 0 614 321 92 0 chr12 64944831 64945049 -78841406 - MIR SINE MIR -17 245 8 324 266 35 35 chr12 64945428 64945541 -78840914 - L2 LINE L2 -43 3270 3158 591 333 131 27 chr12 64947281 64947894 -78838561 - L2 LINE L2 0 3272 2604 327 285 58 92 chr12 64948520 64948902 -78837553 + MLT1K LTR MaLR 218 586 -2 366 298 78 16 chr12 64949893 64950084 -78836371 - MIR SINE MIR -31 231 29 297 0 0 0 chr12 64950332 64950365 -78836090 + (CA)n Simple_repeat Simple_repeat 2 34 0 217 309 29 0 chr12 64950854 64950922 -78835533 - MIR SINE MIR -18 244 175 294 313 62 0 chr12 64950945 64951041 -78835414 - MER91C DNA MER1_type -19 121 20 233 197 30 45 chr12 64951050 64951116 -78835339 - MIR SINE MIR -98 164 100 293 342 53 76 chr12 64952001 64952264 -78834191 - L2 LINE L2 -51 3221 2965 2226 109 3 3 chr12 64953652 64953955 -78832500 + AluSp SINE Alu 1 303 -10 3138 162 84 19 chr12 64954650 64955317 -78831138 - MER67C LTR ERV1 0 710 1 2291 103 0 3 chr12 64956244 64956556 -78829899 + AluSx SINE Alu 1 311 -1 204 111 0 0 chr12 64956559 64956595 -78829860 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 31053 115 12 58 chr12 64958186 64964639 -78821816 - L1PA7 LINE L1 -3 6151 12 301 324 9 19 chr12 64964878 64964983 -78821472 - MIR SINE MIR -146 116 13 209 273 0 36 chr12 64966862 64966917 -78819538 + L2 LINE L2 3234 3286 -27 1679 163 35 89 chr12 64966963 64967368 -78819087 + MLT1B LTR MaLR 1 383 -7 23 0 0 0 chr12 64967812 64967835 -78818620 + AT_rich Low_complexity Low_complexity 1 23 0 891 307 72 32 chr12 64968327 64969338 -78817117 - L1ME3A LINE L1 -248 5922 4943 231 196 22 0 chr12 64969635 64969681 -78816774 + (CA)n Simple_repeat Simple_repeat 2 48 0 2067 110 40 7 chr12 64969985 64970285 -78816170 + AluSp SINE Alu 1 310 -3 257 286 18 0 chr12 64970302 64970358 -78816097 - L2 LINE L2 -7 3265 3209 194 0 0 37 chr12 64971036 64971063 -78815392 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1752 94 9 0 chr12 64971066 64971299 -78815156 - AluSp SINE Alu -30 283 49 237 322 33 0 chr12 64971539 64971629 -78814826 + MIR SINE MIR 33 125 -83 315 261 0 0 chr12 64971938 64972003 -78814452 - L2 LINE L2 -56 3257 3193 2051 88 7 2 chr12 64972107 64972412 -78814043 + L1PA13 LINE L1 5831 6141 -20 496 275 41 23 chr12 64972647 64972818 -78813637 - MIR SINE MIR -36 226 53 225 127 18 55 chr12 64973881 64973936 -78812519 + (CA)n Simple_repeat Simple_repeat 1 53 0 348 24 0 0 chr12 64973966 64974007 -78812448 + (CA)n Simple_repeat Simple_repeat 1 41 0 518 230 0 24 chr12 64975113 64975239 -78811216 - MER45A DNA AcHobo -9 169 47 28 0 0 0 chr12 64975366 64975394 -78811061 + AT_rich Low_complexity Low_complexity 1 28 0 426 203 29 0 chr12 64975506 64975575 -78810880 - MER45A DNA AcHobo -105 73 3 762 245 12 70 chr12 64975907 64976148 -78810307 + MIR SINE MIR 13 239 -23 289 370 34 0 chr12 64976342 64976461 -78809994 - L2 LINE L2 0 3272 3150 1122 264 10 17 chr12 64976506 64976805 -78809650 + LTR40a LTR ERVL 1 297 -222 24 32 0 0 chr12 64977695 64977726 -78808729 + AT_rich Low_complexity Low_complexity 1 31 0 553 277 103 45 chr12 64977865 64978089 -78808366 + MIR SINE MIR 17 253 -9 211 302 0 0 chr12 64978239 64978302 -78808153 - L2 LINE L2 -927 2387 2325 209 306 83 37 chr12 64978835 64978943 -78807512 + L2 LINE L2 3160 3272 0 871 215 32 36 chr12 64979847 64980066 -78806389 - MER20 DNA MER1_type -1 218 1 28 0 0 0 chr12 64980623 64980651 -78805804 + AT_rich Low_complexity Low_complexity 1 28 0 292 180 0 0 chr12 64980790 64980840 -78805615 - L2 LINE L2 -9 3263 3214 1314 224 111 79 chr12 64982641 64983351 -78803104 - MER20B DNA MER1_type -6 777 45 213 284 128 20 chr12 64983884 64983986 -78802469 + L2 LINE L2 3201 3313 0 256 270 146 22 chr12 64984031 64984120 -78802335 + MIR SINE MIR 46 145 -117 567 310 17 34 chr12 64984131 64984370 -78802085 + L2 LINE L2 2820 3054 -218 1231 173 40 99 chr12 64984429 64984782 -78801673 + MLT1A2 LTR MaLR 43 374 0 438 270 36 29 chr12 64984796 64984933 -78801522 + L2 LINE L2 3126 3263 -50 183 296 212 67 chr12 64984961 64985380 -78801075 + L2 LINE L2 2814 3293 -20 543 322 30 25 chr12 64987476 64987712 -78798743 - MIR SINE MIR -6 256 20 1238 255 113 17 chr12 64987827 64988327 -78798128 + L2 LINE L2 2541 3075 -238 890 185 0 7 chr12 64988327 64988478 -78797977 + FRAM SINE Alu 1 146 -30 180 0 0 0 chr12 64988481 64988501 -78797954 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 677 292 17 30 chr12 64988517 64988750 -78797705 + L2 LINE L2 3084 3313 0 525 265 138 6 chr12 64989948 64990115 -78796340 - MIR3 SINE MIR -12 196 10 524 322 91 26 chr12 64990511 64990862 -78795593 + LTR16A LTR ERVL 77 450 0 516 236 40 34 chr12 64991178 64991326 -78795129 - MIR SINE MIR -37 225 77 365 237 77 77 chr12 64992165 64992334 -78794121 - MIR SINE MIR 0 262 94 344 217 33 22 chr12 64992330 64992422 -78794033 + MIR SINE MIR 68 160 -102 * 279 234 0 26 chr12 64992426 64992503 -78793952 + L2 LINE L2 3238 3312 -1 719 338 5 0 chr12 64993012 64993225 -78793230 - MIR SINE MIR -2 260 47 215 337 69 0 chr12 64993739 64993840 -78792615 + MER91C DNA MER1_type 33 140 0 2004 149 0 16 chr12 64993955 64994264 -78792191 + AluJb SINE Alu 1 304 -8 1935 145 12 15 chr12 64995375 64995713 -78790742 + MER1B DNA MER1_type 1 337 0 1418 113 19 9 chr12 64996480 64996693 -78789762 - AluJb SINE Alu -12 300 86 1276 214 4 0 chr12 64997146 64997421 -78789034 + L1 LINE L1 4774 5049 -1097 313 322 0 0 chr12 64997446 64997536 -78788919 + L1MC4 LINE L1 6614 6703 -1339 5122 144 29 2 chr12 64997552 64997631 -78788824 + L1PA16 LINE L1 5109 5184 -982 2392 75 3 3 chr12 64997631 64997936 -78788519 + AluY SINE Alu 1 305 -6 5122 144 29 2 chr12 64997936 64998881 -78787574 + L1PA16 LINE L1 5184 6150 -16 253 82 41 0 chr12 64999735 64999784 -78786671 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 337 34 11 chr12 65000315 65000404 -78786051 - L2 LINE L2 -8 3264 3174 1811 128 60 11 chr12 65000801 65001082 -78785373 + AluSx SINE Alu 1 295 -17 252 307 123 18 chr12 65003135 65003249 -78783206 + L2 LINE L2 3147 3272 0 1759 167 3 23 chr12 65003561 65003860 -78782595 + AluJo SINE Alu 1 293 -19 219 373 18 9 chr12 65003890 65004000 -78782455 + MIR SINE MIR 2 112 -150 686 204 6 87 chr12 65004027 65004102 -78782353 - FAM SINE Alu -153 158 103 603 0 0 0 chr12 65004102 65004169 -78782286 + (TTATG)n Simple_repeat Simple_repeat 4 70 0 686 204 6 87 chr12 65004169 65004265 -78782190 - FAM SINE Alu -208 103 1 313 285 77 74 chr12 65004418 65004730 -78781725 - MLT1J LTR MaLR -196 315 3 216 67 0 0 chr12 65004939 65004969 -78781486 + (CA)n Simple_repeat Simple_repeat 1 30 0 6220 168 4 5 chr12 65005067 65007068 -78779387 + L1PB1 LINE L1 4074 6137 -14 2117 201 102 44 chr12 65007653 65008241 -78778214 + MLT1E3 LTR MaLR 1 622 -2 2220 97 0 36 chr12 65008418 65008726 -78777729 - AluSx SINE Alu -15 297 1 1817 196 25 18 chr12 65009275 65009668 -78776787 - LTR58 LTR ERV1 -15 664 269 269 109 0 0 chr12 65009670 65009716 -78776739 - L1PA4 LINE L1 0 6155 6110 244 196 0 0 chr12 65009716 65009762 -78776693 - LTR58 LTR ERV1 -405 274 229 1604 146 52 0 chr12 65009762 65010029 -78776426 - LTR58 LTR ERV1 -398 281 1 24 32 0 0 chr12 65011698 65011729 -78774726 + AT_rich Low_complexity Low_complexity 1 31 0 230 357 14 0 chr12 65012029 65012161 -78774294 + MIR SINE MIR 19 152 -56 250 255 0 0 chr12 65012386 65012437 -78774018 + (TATG)n Simple_repeat Simple_repeat 1 51 0 376 272 0 29 chr12 65012640 65012743 -78773712 - MLT1J2 LTR MaLR -291 159 60 198 250 79 26 chr12 65012871 65012947 -78773508 + MIR SINE MIR 183 262 0 2215 125 0 0 chr12 65013100 65013397 -78773058 + AluSx SINE Alu 7 303 -9 24 0 0 0 chr12 65013629 65013653 -78772802 + AT_rich Low_complexity Low_complexity 1 24 0 445 303 0 62 chr12 65014388 65014550 -78771905 + MIR SINE MIR 13 164 -98 197 280 0 67 chr12 65014757 65014832 -78771623 + MIR SINE MIR 149 218 -44 1913 158 0 17 chr12 65015299 65015597 -78770858 - AluJb SINE Alu -19 293 1 2325 62 0 17 chr12 65015621 65015913 -78770542 - AluY SINE Alu -24 287 1 22 0 0 0 chr12 65016116 65016138 -78770317 + AT_rich Low_complexity Low_complexity 1 22 0 373 328 118 37 chr12 65016184 65016455 -78770000 + L2 LINE L2 2324 2616 -698 599 165 39 0 chr12 65016505 65016608 -78769847 - AluJo SINE Alu -177 135 29 601 311 11 22 chr12 65016608 65016887 -78769568 + L2 LINE L2 2691 3052 -261 316 300 91 9 chr12 65016944 65017054 -78769401 + L2 LINE L2 3189 3307 -6 32 0 0 0 chr12 65019967 65019999 -78766456 + AT_rich Low_complexity Low_complexity 1 32 0 6792 121 8 21 chr12 65020368 65021937 -78764518 + L1MA2 LINE L1 4739 6287 -17 288 0 0 0 chr12 65021937 65021969 -78764486 + (CA)n Simple_repeat Simple_repeat 2 33 0 230 0 33 0 chr12 65022364 65022394 -78764061 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 323 102 34 chr12 65023899 65024134 -78762321 + MIR SINE MIR 12 262 0 342 67 0 0 chr12 65024195 65024240 -78762215 + (TG)n Simple_repeat Simple_repeat 2 46 0 1857 253 89 19 chr12 65024924 65025509 -78760946 + MLT1E2 LTR MaLR 1 626 0 1276 168 10 0 chr12 65025912 65026120 -78760335 - AluSg/x SINE Alu -18 294 85 384 308 0 46 chr12 65026210 65026340 -78760115 + L2 LINE L2 3190 3313 0 5317 137 25 71 chr12 65026551 65027646 -78758809 - Tigger3b DNA MER2_type 0 1231 188 260 341 0 0 chr12 65027701 65027877 -78758578 + G-rich Low_complexity Low_complexity 1 176 0 246 174 0 0 chr12 65028604 65028650 -78757805 + (TG)n Simple_repeat Simple_repeat 1 46 0 1533 159 16 8 chr12 65028660 65028917 -78757538 - AluJb SINE Alu -45 267 9 24 0 0 0 chr12 65028973 65028997 -78757458 + AT_rich Low_complexity Low_complexity 1 24 0 695 282 75 9 chr12 65030149 65030362 -78756093 + MIR SINE MIR 34 260 -2 1862 162 80 3 chr12 65031398 65031737 -78754718 + MLT1A1 LTR MaLR 1 365 0 528 266 42 68 chr12 65032099 65032362 -78754093 - MER112 DNA MER1_type -1 259 4 26 0 0 0 chr12 65032855 65032881 -78753574 + AT_rich Low_complexity Low_complexity 1 26 0 587 303 113 17 chr12 65033331 65033855 -78752600 - L1MEd LINE L1 -2389 3740 3167 22 0 0 0 chr12 65033978 65034000 -78752455 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 65034456 65034485 -78751970 + AT_rich Low_complexity Low_complexity 1 29 0 437 284 117 8 chr12 65034489 65034836 -78751619 - L1MEd LINE L1 -4780 1530 1103 509 298 42 18 chr12 65034844 65035012 -78751443 - L2 LINE L2 -5 3308 3137 1394 190 6 72 chr12 65035114 65035258 -78751197 + AluJo SINE Alu 3 155 -157 2365 59 0 0 chr12 65035258 65035544 -78750911 + AluY SINE Alu 4 289 -22 1394 190 6 72 chr12 65035544 65035563 -78750892 + AluJo SINE Alu 155 174 -138 330 98 0 0 chr12 65035563 65035614 -78750841 + (TG)n Simple_repeat Simple_repeat 2 52 0 1394 190 6 72 chr12 65035614 65035770 -78750685 + AluJo SINE Alu 174 302 -10 822 270 76 38 chr12 65035775 65036119 -78750336 - L2 LINE L2 -15 3298 2942 509 266 79 67 chr12 65036133 65036400 -78750055 - L1MEd LINE L1 -5079 1040 771 560 146 10 10 chr12 65036408 65036504 -78749951 - MLT1E LTR MaLR -2 591 496 6494 129 26 69 chr12 65036692 65037978 -78748477 + Tigger3b DNA MER2_type 1 1231 0 384 308 0 46 chr12 65038189 65038319 -78748136 - L2 LINE L2 0 3313 3190 1276 168 10 0 chr12 65038409 65038617 -78747838 + AluSg/x SINE Alu 83 292 -18 1857 253 89 19 chr12 65039020 65039605 -78746850 - MLT1E2 LTR MaLR 0 626 1 342 67 0 0 chr12 65040289 65040334 -78746121 + (CA)n Simple_repeat Simple_repeat 2 46 0 397 323 102 34 chr12 65040395 65040630 -78745825 - MIR SINE MIR 0 262 12 230 0 33 0 chr12 65042135 65042165 -78744290 + (TG)n Simple_repeat Simple_repeat 2 32 0 288 0 0 0 chr12 65042560 65042592 -78743863 + (TG)n Simple_repeat Simple_repeat 2 33 0 6792 121 8 21 chr12 65042592 65044161 -78742294 - L1MA2 LINE L1 -17 6287 4739 32 0 0 0 chr12 65044530 65044562 -78741893 + AT_rich Low_complexity Low_complexity 1 32 0 316 300 91 9 chr12 65047475 65047585 -78738870 - L2 LINE L2 -6 3307 3189 601 311 11 22 chr12 65047642 65047921 -78738534 - L2 LINE L2 -261 3052 2691 599 165 39 0 chr12 65047921 65048024 -78738431 + AluJo SINE Alu 29 135 -177 373 328 118 37 chr12 65048074 65048345 -78738110 - L2 LINE L2 -698 2616 2324 22 0 0 0 chr12 65048391 65048413 -78738042 + AT_rich Low_complexity Low_complexity 1 22 0 2282 62 3 17 chr12 65048616 65048907 -78737548 + AluY SINE Alu 1 287 -24 1786 158 7 20 chr12 65048931 65049228 -78737227 + AluJb SINE Alu 1 293 -19 197 280 0 67 chr12 65049695 65049770 -78736685 - MIR SINE MIR -44 218 149 445 303 0 62 chr12 65049977 65050139 -78736316 - MIR SINE MIR -98 164 13 24 0 0 0 chr12 65050874 65050898 -78735557 + AT_rich Low_complexity Low_complexity 1 24 0 2125 119 0 7 chr12 65051130 65051424 -78735031 - AluSx SINE Alu -9 303 12 198 250 79 26 chr12 65051584 65051660 -78734795 - MIR SINE MIR 0 262 183 376 272 0 29 chr12 65051788 65051891 -78734564 + MLT1J2 LTR MaLR 60 159 -291 250 255 0 0 chr12 65052094 65052145 -78734310 + (CATA)n Simple_repeat Simple_repeat 1 51 0 230 357 14 0 chr12 65052370 65052502 -78733953 - MIR SINE MIR -56 152 19 24 32 0 0 chr12 65052803 65052834 -78733621 + AT_rich Low_complexity Low_complexity 1 31 0 1604 146 52 0 chr12 65054503 65054770 -78731685 + LTR58 LTR ERV1 1 281 -398 244 196 0 0 chr12 65054770 65054816 -78731639 + LTR58 LTR ERV1 229 274 -405 269 109 0 0 chr12 65054816 65054862 -78731593 + L1PA4 LINE L1 6110 6155 0 1817 196 25 18 chr12 65054864 65055257 -78731198 + LTR58 LTR ERV1 269 664 -15 2220 97 0 36 chr12 65055806 65056114 -78730341 + AluSx SINE Alu 1 297 -15 2086 206 102 41 chr12 65056291 65056877 -78729578 - MLT1E3 LTR MaLR -2 622 1 192 250 0 0 chr12 65057088 65057132 -78729323 + MIR SINE MIR 98 141 -67 23 33 0 0 chr12 65057173 65057203 -78729252 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 65057489 65057510 -78728945 + AT_rich Low_complexity Low_complexity 1 21 0 663 275 80 86 chr12 65057718 65058195 -78728260 + L2 LINE L2 2835 3308 -5 262 136 23 0 chr12 65058391 65058435 -78728020 + L2 LINE L2 3261 3305 -8 1469 99 9 5 chr12 65059867 65060089 -78726366 + L1PB1 LINE L1 5928 6150 -1 288 290 172 101 chr12 65060544 65060782 -78725673 + L2 LINE L2 3017 3271 -1 2884 186 49 8 chr12 65060898 65061167 -78725288 + MER6 DNA MER2_type 81 337 -528 243 0 0 0 chr12 65061167 65061194 -78725261 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 2884 186 49 8 chr12 65061194 65061435 -78725020 + MER6 DNA MER2_type 337 612 -253 2752 155 22 0 chr12 65061435 65061924 -78724531 + L1PB4 LINE L1 5650 6149 -7 1575 131 8 4 chr12 65061981 65062248 -78724207 + MER6 DNA MER2_type 598 865 0 * 3367 172 16 8 chr12 65062248 65062841 -78723614 + MER67C LTR ERV1 113 710 0 199 359 90 26 chr12 65063079 65063235 -78723220 - L2 LINE L2 -189 3083 2918 216 0 0 0 chr12 65063572 65063596 -78722859 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 511 152 11 0 chr12 65064778 65064870 -78721585 + L1PA15 LINE L1 6062 6154 -11 191 253 51 51 chr12 65065017 65065096 -78721359 + MIR SINE MIR 178 256 -6 405 300 100 8 chr12 65065134 65065264 -78721191 - MIR3 SINE MIR -47 161 20 509 343 161 17 chr12 65065399 65066056 -78720399 + L2 LINE L2 1918 2669 -645 318 50 0 0 chr12 65066123 65066163 -78720292 + (TC)n Simple_repeat Simple_repeat 1 40 0 309 68 0 0 chr12 65066162 65066206 -78720249 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 850 259 113 14 chr12 65066414 65066707 -78719748 + L1MC5 LINE L1 5415 5736 -2072 2418 291 110 58 chr12 65067153 65068835 -78717620 + L1MC5 LINE L1 5736 7583 -378 243 0 0 0 chr12 65068835 65068862 -78717593 + (CA)n Simple_repeat Simple_repeat 2 28 0 2418 291 110 58 chr12 65068862 65069152 -78717303 + L1MC5 LINE L1 7583 7856 -105 261 373 0 0 chr12 65069153 65069228 -78717227 - MIR SINE MIR -165 97 23 2365 86 0 0 chr12 65069460 65069764 -78716691 + AluY SINE Alu 1 304 -7 1070 178 4 40 chr12 65070510 65070735 -78715720 - L1PB4 LINE L1 0 6156 5940 258 180 33 0 chr12 65071010 65071071 -78715384 + (TTA)n Simple_repeat Simple_repeat 1 63 0 1681 182 77 3 chr12 65071338 65071678 -78714777 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chr12 65072104 65072145 -78714310 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 515 326 26 31 chr12 65072745 65072972 -78713483 + MIR SINE MIR 31 256 -6 2285 78 14 10 chr12 65073021 65073317 -78713138 + AluSx SINE Alu 1 297 -15 528 346 73 29 chr12 65073671 65073900 -78712555 - L2 LINE L2 -896 2418 2200 1841 125 6 76 chr12 65073900 65074229 -78712226 + AluSx SINE Alu 1 306 -6 528 346 73 29 chr12 65074229 65074481 -78711974 - L2 LINE L2 -1114 2200 1916 226 325 71 16 chr12 65074589 65074715 -78711740 - L3 LINE CR1 -119 1458 1326 347 278 112 53 chr12 65074744 65074931 -78711524 + L2 LINE L2 3116 3313 0 365 347 41 18 chr12 65075131 65075301 -78711154 + MIR3 SINE MIR 17 190 -18 28 0 0 0 chr12 65075753 65075781 -78710674 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 65076081 65076102 -78710353 + AT_rich Low_complexity Low_complexity 1 21 0 483 305 150 0 chr12 65076775 65076962 -78709493 + MIR SINE MIR 14 228 -34 712 347 91 16 chr12 65077379 65077875 -78708580 + L2 LINE L2 2172 2704 -610 1808 172 34 0 chr12 65077912 65078209 -78708246 + AluJo SINE Alu 6 312 0 1624 234 83 9 chr12 65078347 65078782 -78707673 - LTR40a LTR ERVL 0 519 53 245 333 145 0 chr12 65078795 65078912 -78707543 + MIR SINE MIR 36 169 -93 192 352 37 49 chr12 65079066 65079228 -78707227 - L2 LINE L2 -17 3255 3096 371 360 20 13 chr12 65079266 65079419 -78707036 - MIR3 SINE MIR -23 185 32 384 316 41 0 chr12 65081748 65081846 -78704609 - L2 LINE L2 -20 3252 3151 358 219 61 12 chr12 65082921 65083003 -78703452 + MER5A DNA MER1_type 9 94 -95 248 291 25 13 chr12 65083392 65083471 -78702984 + L2 LINE L2 3190 3269 -44 1478 187 29 44 chr12 65083472 65083815 -78702640 + MLT1A1 LTR MaLR 3 340 -25 2048 132 0 3 chr12 65083835 65084122 -78702333 - AluJb SINE Alu -26 286 1 188 161 0 0 chr12 65084166 65084197 -78702258 + L2 LINE L2 3282 3312 -1 234 105 0 0 chr12 65084498 65084536 -78701919 + (CAT)n Simple_repeat Simple_repeat 3 40 0 1890 140 7 23 chr12 65084937 65085237 -78701218 - AluJb SINE Alu -17 295 1 287 292 0 0 chr12 65085294 65085359 -78701096 - MIR SINE MIR -80 128 64 27 0 0 0 chr12 65086752 65086779 -78699676 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 65087006 65087027 -78699428 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr12 65087928 65087957 -78698498 + (TATG)n Simple_repeat Simple_repeat 4 32 0 29 0 0 0 chr12 65089173 65089202 -78697253 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr12 65089213 65089244 -78697211 + AT_rich Low_complexity Low_complexity 1 31 0 363 23 0 0 chr12 65090379 65090423 -78696032 + (TG)n Simple_repeat Simple_repeat 1 44 0 249 33 0 0 chr12 65094740 65094770 -78691685 + (CA)n Simple_repeat Simple_repeat 1 30 0 3544 145 26 13 chr12 65095198 65095813 -78690642 - Tigger1 DNA MER2_type 0 2418 1796 9370 121 24 5 chr12 65095813 65097303 -78689152 - Tigger1 DNA MER2_type -844 1574 56 24 32 0 0 chr12 65097309 65097340 -78689115 + AT_rich Low_complexity Low_complexity 1 31 0 2038 132 37 6 chr12 65097357 65097683 -78688772 + MER1B DNA MER1_type 2 337 0 2399 218 28 5 chr12 65097888 65098502 -78687953 - L1ME1 LINE L1 -5 6161 5534 182 54 0 81 chr12 65098715 65098752 -78687703 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 237 264 0 28 chr12 65099206 65099278 -78687177 + L2 LINE L2 3231 3300 -13 555 209 82 0 chr12 65099412 65099546 -78686909 - MLT1H LTR MaLR -23 526 382 207 100 0 0 chr12 65099625 65099655 -78686800 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 22671 169 25 29 chr12 65099662 65102142 -78684313 - L1PA8A LINE L1 -31 6439 3952 183 80 0 0 chr12 65102142 65102167 -78684288 + (TTG)n Simple_repeat Simple_repeat 3 27 0 22671 169 25 29 chr12 65102167 65102800 -78683655 - L1PA8A LINE L1 -2518 3952 3318 1879 116 91 0 chr12 65102800 65103075 -78683380 - AluSx SINE Alu -12 300 1 22671 169 25 29 chr12 65103075 65103276 -78683179 - L1PA8A LINE L1 -3152 3318 3118 2074 139 10 0 chr12 65103276 65103578 -78682877 - AluSx SINE Alu -3 309 5 22671 169 25 29 chr12 65103578 65106636 -78679819 - L1PA8A LINE L1 -3352 3118 3 731 136 12 6 chr12 65106989 65107233 -78679222 - AluJb SINE Alu -18 294 1 235 375 12 0 chr12 65107450 65107530 -78678925 + L2 LINE L2 2976 3056 -216 243 61 0 0 chr12 65107919 65107952 -78678503 + (CA)n Simple_repeat Simple_repeat 1 33 0 2157 121 18 49 chr12 65109581 65109968 -78676487 + THE1C LTR MaLR 1 375 0 241 274 126 0 chr12 65110250 65110345 -78676110 - MIR SINE MIR -66 196 90 2055 75 52 0 chr12 65110372 65110679 -78675776 + AluY SINE Alu 1 321 0 2205 111 0 7 chr12 65111755 65112061 -78674394 + AluSg SINE Alu 1 304 -6 198 350 105 28 chr12 65112642 65112785 -78673670 - L3b LINE CR1 -18 1565 1412 2378 95 0 0 chr12 65113819 65114113 -78672342 + AluSc SINE Alu 1 294 -15 1904 105 123 36 chr12 65114652 65114985 -78671470 + THE1B LTR MaLR 3 364 0 1491 181 104 9 chr12 65114985 65115323 -78671132 + MLT1B LTR MaLR 21 390 0 231 226 20 108 chr12 65116279 65116381 -78670074 + MIR SINE MIR 99 191 -71 2469 319 62 33 chr12 65116448 65117918 -78668537 + HERV16 LTR ERVL 1810 3370 -1900 1002 268 33 10 chr12 65118014 65118316 -78668139 + LTR16A LTR ERVL 122 430 -20 1912 147 0 3 chr12 65118442 65118778 -78667677 - AluJo SINE Alu 0 335 1 292 211 0 0 chr12 65119049 65119106 -78667349 - L2 LINE L2 0 3313 3257 23 86 0 0 chr12 65120756 65120814 -78665641 + AT_rich Low_complexity Low_complexity 1 58 0 1148 121 11 0 chr12 65120815 65120989 -78665466 + L1MC1 LINE L1 5427 5602 -731 1470 171 11 7 chr12 65120989 65121255 -78665200 + L1MC1 LINE L1 6060 6329 -4 230 200 0 20 chr12 65121255 65121305 -78665150 + GA-rich Low_complexity Low_complexity 1 49 0 * 674 126 11 55 chr12 65121258 65121307 -78665148 + (GGAA)n Simple_repeat Simple_repeat 4 54 -123 2296 58 16 7 chr12 65121307 65121615 -78664840 + AluY SINE Alu 1 311 0 674 126 11 55 chr12 65121615 65121747 -78664708 + (GGAA)n Simple_repeat Simple_repeat 54 177 0 637 291 104 12 chr12 65121967 65122448 -78664007 + L1M4 LINE L1 4770 5294 -852 2207 69 3 28 chr12 65122976 65123295 -78663160 - AluY SINE Alu 0 312 1 269 323 72 0 chr12 65123621 65123856 -78662599 + L1MC/D LINE L1 4342 4593 -1553 1381 161 11 39 chr12 65123922 65124182 -78662273 - AluJo SINE Alu -22 290 38 1050 192 29 127 chr12 65124184 65124569 -78661886 + L1MB3 LINE L1 4850 5196 -950 2923 169 22 38 chr12 65124573 65124821 -78661634 + L1MB3 LINE L1 5543 5793 -390 357 24 0 0 chr12 65124821 65124863 -78661592 + (CA)n Simple_repeat Simple_repeat 1 42 0 2923 169 22 38 chr12 65124863 65125012 -78661443 + L1MB3 LINE L1 5793 5943 -240 2224 151 3 19 chr12 65125012 65125383 -78661072 - MLT1A1 LTR MaLR 0 365 1 2923 169 22 38 chr12 65125383 65125619 -78660836 + L1MB3 LINE L1 5943 6167 -16 27 0 0 0 chr12 65125624 65125651 -78660804 + AT_rich Low_complexity Low_complexity 1 27 0 1185 97 0 18 chr12 65125692 65125857 -78660598 + AluSg/x SINE Alu 140 301 -11 375 321 84 8 chr12 65125893 65126251 -78660204 + L1MC/D LINE L1 4757 5141 -1005 844 324 21 12 chr12 65126417 65126747 -78659708 + L1MC/D LINE L1 5340 5672 -2136 635 372 95 28 chr12 65126879 65126937 -78659518 + L2 LINE L2 2113 2166 -1148 2394 63 0 13 chr12 65126937 65127239 -78659216 - AluY SINE Alu -13 298 1 635 372 95 28 chr12 65127239 65127885 -78658570 + L2 LINE L2 2166 2864 -450 222 303 91 0 chr12 65128071 65128137 -78658318 + MER91A DNA MER1_type 1 72 -124 2663 194 36 0 chr12 65128163 65128766 -78657689 - L1 LINE L1 -784 5544 4920 225 289 0 0 chr12 65128779 65128831 -78657624 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 31 0 0 0 chr12 65128836 65128867 -78657588 + AT_rich Low_complexity Low_complexity 1 31 0 961 172 6 0 chr12 65128867 65129036 -78657419 - L1PA16 LINE L1 -101 6065 5896 2369 125 3 3 chr12 65129038 65129391 -78657064 - L1PA16 LINE L1 -421 5745 5393 * 9290 177 32 114 chr12 65129373 65130823 -78655632 - L1 LINE L1 -1398 4930 3363 243 0 0 0 chr12 65130823 65130850 -78655605 + (TTG)n Simple_repeat Simple_repeat 1 27 0 9290 177 32 114 chr12 65130850 65131643 -78654812 - L1 LINE L1 -2965 3363 2973 1572 216 7 0 chr12 65131643 65131952 -78654503 - AluJb SINE Alu 0 311 1 9290 177 32 114 chr12 65131952 65132607 -78653848 - L1 LINE L1 -3355 2973 2266 301 239 0 14 chr12 65132610 65132681 -78653774 + L1MEd LINE L1 1188 1257 -4862 412 152 239 0 chr12 65132868 65132960 -78653495 - FLAM_C SINE Alu -13 130 17 324 222 288 10 chr12 65133144 65133342 -78653113 + L2 LINE L2 2439 2691 -623 266 236 36 55 chr12 65133402 65133492 -78652963 - MIR SINE MIR -141 121 32 2060 138 7 0 chr12 65133492 65133788 -78652667 - AluSx SINE Alu -14 298 1 266 236 36 55 chr12 65133788 65133807 -78652648 - MIR SINE MIR -230 32 14 2097 151 0 0 chr12 65134044 65134356 -78652099 - AluSx SINE Alu 0 312 1 235 232 89 0 chr12 65134382 65134438 -78652017 + L2 LINE L2 3183 3243 -70 4645 209 36 96 chr12 65136577 65136730 -78649725 - L1 LINE L1 -4052 2276 2115 654 198 48 0 chr12 65136730 65136856 -78649599 - FLAM_A SINE Alu -1 132 1 4645 209 36 96 chr12 65136856 65137230 -78649225 - L1 LINE L1 -4213 2115 1720 2407 81 7 3 chr12 65137230 65137540 -78648915 - AluY SINE Alu 0 311 1 4645 209 36 96 chr12 65137540 65138202 -78648253 - L1 LINE L1 -4608 1720 1020 647 44 0 22 chr12 65138202 65138293 -78648162 + AluY SINE Alu 2 90 -221 4645 209 36 96 chr12 65138293 65139368 -78647087 - L1 LINE L1 -5308 1020 14 844 210 11 11 chr12 65139379 65139560 -78646895 - MIR SINE MIR 0 262 82 210 371 67 0 chr12 65139645 65139734 -78646721 + L2 LINE L2 3169 3263 -9 191 306 157 14 chr12 65140242 65140389 -78646066 + L2 LINE L2 2105 2272 -1042 2056 280 57 2 chr12 65140414 65140925 -78645530 + MLT1G1 LTR MaLR 57 595 0 248 158 49 24 chr12 65141006 65141088 -78645367 + (TA)n Simple_repeat Simple_repeat 1 84 0 2247 114 0 0 chr12 65141112 65141410 -78645045 + AluSx SINE Alu 1 298 -14 244 170 0 19 chr12 65141494 65141547 -78644908 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2137 153 12 3 chr12 65141684 65142018 -78644437 + MER1B DNA MER1_type 1 337 0 196 280 20 0 chr12 65142831 65142881 -78643574 - L2 LINE L2 -12 3301 3251 451 288 32 72 chr12 65143016 65143416 -78643039 + HAL1 LINE L1 1782 2165 -342 344 186 139 12 chr12 65143461 65143547 -78642908 - FLAM_A SINE Alu -9 124 53 225 274 80 9 chr12 65143599 65143712 -78642743 + HAL1 LINE L1 2232 2352 -155 1574 187 10 40 chr12 65144765 65145065 -78641390 - AluJb SINE Alu -21 291 1 779 286 56 65 chr12 65145070 65145870 -78640585 - L1ME4a LINE L1 0 6121 5315 1221 255 67 79 chr12 65145980 65146514 -78639941 + MLT1G LTR MaLR 63 590 0 2066 177 30 3 chr12 65146656 65147017 -78639438 - MSTA LTR MaLR 0 428 58 2180 73 0 0 chr12 65147117 65147502 -78638953 - L1P3 LINE L1 -612 5542 5158 465 344 28 21 chr12 65148633 65148915 -78637540 - HERVL LTR ERVL -797 2759 2476 328 286 32 14 chr12 65149009 65149185 -78637270 - HERVL LTR ERVL -2475 3010 2911 1356 226 107 34 chr12 65149444 65149970 -78636485 + L1MC/D LINE L1 4547 5110 -1036 300 239 76 11 chr12 65150572 65150664 -78635791 - MLT1D LTR MaLR -398 107 10 1138 278 112 22 chr12 65150756 65151397 -78635058 - L1ME LINE L1 -5234 836 138 489 82 24 12 chr12 65151406 65151491 -78634964 + (TTCTC)n Simple_repeat Simple_repeat 5 90 0 31 0 0 0 chr12 65152178 65152209 -78634246 + AT_rich Low_complexity Low_complexity 1 31 0 1064 315 65 24 chr12 65152245 65152658 -78633797 + LTR16A LTR ERVL 21 450 0 382 192 27 0 chr12 65152679 65152752 -78633703 - LTR16C LTR ERVL 0 491 417 1134 144 0 0 chr12 65153902 65154075 -78632380 - AluSg/x SINE Alu 0 312 140 2852 10 0 0 chr12 65154192 65154503 -78631952 + AluYb8 SINE Alu 1 311 -7 424 289 87 18 chr12 65154678 65154993 -78631462 + L1MC/D LINE L1 5106 5444 -798 1812 117 0 0 chr12 65155140 65155389 -78631066 + AluY SINE Alu 35 283 -28 1735 172 3 10 chr12 65156460 65156750 -78629705 - MER47B DNA MER2_type 0 418 131 696 322 45 4 chr12 65157484 65157726 -78628729 - MIR SINE MIR -10 252 1 24 0 0 0 chr12 65158255 65158279 -78628176 + AT_rich Low_complexity Low_complexity 1 24 0 257 119 0 0 chr12 65158472 65158514 -78627941 - MER63C DNA MER1_type -369 561 520 538 271 13 71 chr12 65158515 65158740 -78627715 + MER58C DNA MER1_type 1 212 -3 * 593 262 65 36 chr12 65158740 65159004 -78627451 - MER63C DNA MER1_type -406 524 253 877 322 68 22 chr12 65159344 65159710 -78626745 + LTR16C LTR ERVL 43 425 -66 228 156 22 0 chr12 65160027 65160072 -78626383 + (CCTTG)n Simple_repeat Simple_repeat 2 47 0 361 292 37 31 chr12 65161356 65161517 -78624938 - L1M4 LINE L1 -953 5193 5032 539 278 45 28 chr12 65161566 65161853 -78624602 - L1M4 LINE L1 -1296 4850 4564 762 256 16 39 chr12 65161855 65162160 -78624295 - L1M4 LINE L1 -3174 2972 2675 1678 35 0 0 chr12 65162162 65162360 -78624095 + L1PA4 LINE L1 5956 6153 -2 336 290 32 26 chr12 65162394 65162549 -78623906 - L1M4 LINE L1 -3702 2444 2289 386 279 178 4 chr12 65163120 65163367 -78623088 - MER113 DNA MER1_type? -112 409 120 3463 158 18 44 chr12 65164475 65164694 -78621761 - L1PB4 LINE L1 -171 5985 5762 1620 179 29 13 chr12 65164694 65164869 -78621586 - AluJb SINE Alu 0 312 128 661 29 80 0 chr12 65164869 65165006 -78621449 + (TA)n Simple_repeat Simple_repeat 2 149 0 1620 179 29 13 chr12 65165006 65165137 -78621318 - AluJb SINE Alu -184 128 1 3463 158 18 44 chr12 65165137 65165641 -78620814 - L1PB4 LINE L1 -394 5762 5281 312 167 0 0 chr12 65165641 65165695 -78620760 + LTR60 LTR ERV1 1 54 -532 211 333 113 7 chr12 65165894 65166044 -78620411 - MIR SINE MIR -85 177 12 1585 170 0 0 chr12 65166646 65166899 -78619556 + AluSx SINE Alu 1 253 -59 645 277 53 7 chr12 65167000 65167209 -78619246 + MLT-int LTR MaLR 531 741 -910 1917 291 119 8 chr12 65167240 65167978 -78618477 + MSTC-int LTR MaLR 832 1651 0 471 126 32 4 chr12 65167984 65168061 -78618394 + MSTC LTR MaLR 7 94 -334 2118 115 0 0 chr12 65168061 65168347 -78618108 - AluSg SINE Alu -20 290 5 471 126 32 4 chr12 65168347 65168359 -78618096 + MSTC LTR MaLR 94 104 -324 605 167 79 24 chr12 65168392 65168518 -78617937 + MSTC LTR MaLR 296 428 0 4361 160 21 5 chr12 65168689 65169494 -78616961 - L1MA4 LINE L1 -169 7550 6733 227 133 0 50 chr12 65169594 65169654 -78616801 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 4398 209 11 2 chr12 65169654 65170647 -78615808 - L1MA4 LINE L1 -847 6718 5717 243 394 21 38 chr12 65171978 65172214 -78614241 + L2 LINE L2 2828 3059 -213 439 336 65 9 chr12 65172297 65172511 -78613944 + MLT1I LTR MaLR 182 407 -2 413 340 13 13 chr12 65173390 65173540 -78612915 + L2 LINE L2 3150 3299 -14 315 271 7 56 chr12 65173911 65174055 -78612400 - L1MCa LINE L1 -4799 1627 1491 2602 226 20 0 chr12 65174166 65174676 -78611779 - L1MA4 LINE L1 -5706 1859 1340 1047 332 21 16 chr12 65174678 65175058 -78611397 - LTR16C LTR ERVL -26 465 84 200 240 27 0 chr12 65175242 65175317 -78611138 + (TA)n Simple_repeat Simple_repeat 2 78 0 360 279 145 22 chr12 65176169 65176348 -78610107 - L1M4 LINE L1 -921 5225 5025 303 338 61 0 chr12 65176369 65176582 -78609873 - L1M4 LINE L1 -1164 4982 4757 21 0 0 0 chr12 65176729 65176750 -78609705 + AT_rich Low_complexity Low_complexity 1 21 0 310 173 40 12 chr12 65176816 65176989 -78609466 + (TA)n Simple_repeat Simple_repeat 2 179 0 445 267 115 20 chr12 65176991 65177204 -78609251 - L1MDa LINE L1 -2930 3199 2926 2488 54 0 0 chr12 65177204 65177499 -78608956 - AluY SINE Alu -16 295 1 445 267 115 20 chr12 65177499 65177572 -78608883 - L1MDa LINE L1 -3203 2926 2861 211 356 62 27 chr12 65177691 65177916 -78608539 + L2 LINE L2 3081 3313 0 194 290 146 25 chr12 65177925 65178105 -78608350 + MIR SINE MIR 4 209 -53 * 412 315 33 27 chr12 65178101 65178285 -78608170 - MIR SINE MIR 0 262 78 25 0 0 0 chr12 65178516 65178541 -78607914 + AT_rich Low_complexity Low_complexity 1 25 0 2153 148 11 19 chr12 65178563 65178941 -78607514 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr12 65179151 65179191 -78607264 + AT_rich Low_complexity Low_complexity 1 40 0 26 82 0 0 chr12 65180498 65180559 -78605896 + AT_rich Low_complexity Low_complexity 1 61 0 189 188 0 0 chr12 65180865 65180897 -78605558 + MIR SINE MIR 229 260 -2 287 317 109 72 chr12 65181299 65181646 -78604809 - L2 LINE L2 0 3313 2954 242 205 90 26 chr12 65182352 65182430 -78604025 - L2 LINE L2 -7 3265 3183 234 0 0 0 chr12 65185036 65185062 -78601393 + (CAA)n Simple_repeat Simple_repeat 2 27 0 198 195 0 0 chr12 65185547 65185588 -78600867 + MIR SINE MIR 187 227 -35 797 215 35 95 chr12 65185755 65186039 -78600416 + MLT1D LTR MaLR 1 267 -238 302 243 67 112 chr12 65186569 65187058 -78599397 - L1MDa LINE L1 -3623 2506 2036 1816 186 57 9 chr12 65187952 65188302 -78598153 - MER61D LTR ERV1 0 501 135 490 108 0 0 chr12 65188358 65188423 -78598032 - MER61D LTR ERV1 -323 178 114 768 189 74 8 chr12 65188498 65188683 -78597772 - L1MB1 LINE L1 -4 6164 5987 1026 165 41 0 chr12 65188727 65188921 -78597534 - L1MB2 LINE L1 -2 6169 5968 1184 156 56 109 chr12 65188922 65189381 -78597074 + LTR23 LTR ERV1 9 429 -16 810 180 27 13 chr12 65189388 65189538 -78596917 + MSTB1 LTR MaLR 104 255 -177 711 116 123 26 chr12 65189938 65190093 -78596362 - MSTB1 LTR MaLR 0 432 263 268 305 36 17 chr12 65190129 65190285 -78596170 - L1MDa LINE L1 -4608 1521 1380 508 249 87 5 chr12 65190519 65190704 -78595751 - L1MDa LINE L1 -4875 1244 1045 281 238 36 131 chr12 65190790 65190958 -78595497 + MLT1H LTR MaLR 203 354 -195 265 235 0 15 chr12 65191064 65191132 -78595323 + MLT1-int LTR MaLR 16 82 -1289 283 346 13 13 chr12 65191141 65191300 -78595155 + MLT1-int LTR MaLR 320 478 -893 1113 309 87 5 chr12 65191503 65191892 -78594563 - LTR16A LTR ERVL 0 450 30 1813 332 64 24 chr12 65192226 65193120 -78593335 - ERVL LTR ERVL -647 5117 4188 333 328 51 10 chr12 65193160 65193355 -78593100 - ERVL LTR ERVL -1569 4085 3883 1950 220 66 15 chr12 65193376 65193844 -78592611 - MLT1D LTR MaLR -11 494 3 362 330 140 15 chr12 65194216 65194416 -78592039 - MIR SINE MIR -27 235 11 2116 116 0 13 chr12 65195552 65195855 -78590600 + AluSx SINE Alu 1 299 -13 2151 109 3 0 chr12 65195969 65196262 -78590193 + AluSx SINE Alu 1 294 -18 244 284 14 27 chr12 65196432 65196506 -78589949 + Charlie8 DNA MER1_type 1356 1428 -989 409 257 28 69 chr12 65196517 65196661 -78589794 - MIR SINE MIR -117 145 8 423 183 0 0 chr12 65197102 65197184 -78589271 + (TG)n Simple_repeat Simple_repeat 1 82 0 620 224 246 0 chr12 65198011 65198190 -78588265 + MIR SINE MIR 27 249 -13 364 80 0 0 chr12 65198512 65198562 -78587893 - L1MB8 LINE L1 0 6178 6129 330 259 134 0 chr12 65198573 65198685 -78587770 - MIR SINE MIR 0 262 136 342 301 15 45 chr12 65199254 65199387 -78587068 - L2 LINE L2 0 3313 3185 326 264 124 135 chr12 65200116 65200670 -78585785 - L1M2 LINE L1 -5840 1009 462 556 211 39 0 chr12 65202050 65202154 -78584301 - FLAM_C SINE Alu -23 120 13 1681 147 18 0 chr12 65203366 65203638 -78582817 - AluSx SINE Alu -25 287 11 521 304 152 10 chr12 65204694 65204898 -78581557 - MIR SINE MIR -28 234 2 1639 199 0 20 chr12 65204920 65205217 -78581238 - AluJo SINE Alu -21 291 1 182 264 136 36 chr12 65206054 65206164 -78580291 - MIR SINE MIR -57 205 85 241 260 219 10 chr12 65206173 65206269 -78580186 - MIR SINE MIR -11 251 136 232 321 142 9 chr12 65207538 65207644 -78578811 - MIR SINE MIR -94 168 49 4017 181 83 15 chr12 65208107 65208471 -78577984 - L1MB8 LINE L1 -6 6172 5834 1444 141 49 111 chr12 65208471 65208789 -78577666 - MER7A DNA MER2_type -2692 346 55 1496 195 10 17 chr12 65208789 65209086 -78577369 - AluJo SINE Alu -17 295 1 1444 141 49 111 chr12 65209086 65209136 -78577319 - MER7A DNA MER2_type -2983 55 3 4017 181 83 15 chr12 65209136 65210164 -78576291 - L1MB8 LINE L1 -344 5834 4678 21 0 0 0 chr12 65211451 65211472 -78574983 + AT_rich Low_complexity Low_complexity 1 21 0 356 362 141 18 chr12 65212285 65212790 -78573665 + L2 LINE L2 2682 3248 -65 269 329 49 56 chr12 65213443 65213586 -78572869 + MIR SINE MIR 3 144 -118 602 167 0 0 chr12 65213587 65213689 -78572766 + AluJo SINE Alu 1 102 -210 986 176 28 11 chr12 65213844 65214026 -78572429 + AluJo SINE Alu 109 293 -19 336 317 151 52 chr12 65214185 65214661 -78571794 - L2 LINE L2 -571 2743 2221 5874 145 36 18 chr12 65216750 65216978 -78569477 - Tigger3b DNA MER2_type -1954 1074 852 1402 120 60 0 chr12 65216978 65217195 -78569260 + MER30 DNA MER1_type 1 230 0 5874 145 36 18 chr12 65217195 65218021 -78568434 - Tigger3b DNA MER2_type -2176 852 1 1686 182 77 3 chr12 65218025 65218365 -78568090 - MER47A DNA MER2_type 0 366 2 3916 134 76 6 chr12 65218375 65219074 -78567381 - L1MB1 LINE L1 0 6168 5421 362 320 63 5 chr12 65219137 65219359 -78567096 - L1M4 LINE L1 -1166 4980 4746 368 197 197 20 chr12 65219362 65219514 -78566941 + MIR SINE MIR 81 259 -3 23 33 0 0 chr12 65219548 65219578 -78566877 + AT_rich Low_complexity Low_complexity 1 30 0 436 339 108 33 chr12 65219660 65219730 -78566725 - L2 LINE L2 -257 3056 2993 1400 162 98 46 chr12 65219730 65220076 -78566379 - MLT1A1 LTR MaLR 0 365 2 436 339 108 33 chr12 65220076 65220279 -78566176 - L2 LINE L2 -320 2993 2766 2006 146 0 7 chr12 65220705 65221013 -78565442 - AluSx SINE Alu -6 306 1 1791 147 41 35 chr12 65221293 65221420 -78565035 - Tigger7 DNA MER2_type -2 2585 2460 1807 162 3 10 chr12 65221420 65221722 -78564733 + AluJb SINE Alu 1 300 -12 1791 147 41 35 chr12 65221722 65221935 -78564520 - Tigger7 DNA MER2_type -127 2460 2243 653 189 32 4 chr12 65221933 65222130 -78564325 + Tigger7 DNA MER2_type 76 345 -2142 * 262 193 140 0 chr12 65222134 65222191 -78564264 - Tigger7 DNA MER2_type -274 65 1 939 284 100 51 chr12 65222595 65223035 -78563420 + L1M4 LINE L1 3866 4358 -1788 1914 157 3 0 chr12 65223035 65223334 -78563121 + AluSx SINE Alu 1 300 -12 939 284 100 51 chr12 65223334 65223621 -78562834 + L1M4 LINE L1 4358 4629 -1517 2175 127 36 84 chr12 65224487 65224927 -78561528 - L1PB4 LINE L1 -6 6150 5732 3082 137 20 26 chr12 65224927 65225469 -78560986 - L1PB4 LINE L1 -282 6576 6038 * 4965 148 47 23 chr12 65225468 65226030 -78560425 + L1PA16 LINE L1 5191 5782 -384 2399 71 3 0 chr12 65226030 65226327 -78560128 + AluSp SINE Alu 1 298 -15 4965 148 47 23 chr12 65226327 65226713 -78559742 + L1PA16 LINE L1 5782 6157 -9 12204 236 63 48 chr12 65226746 65228590 -78557865 - L1PB4 LINE L1 -791 6057 4243 270 0 0 0 chr12 65228590 65228620 -78557835 + (TTG)n Simple_repeat Simple_repeat 1 30 0 12204 236 63 48 chr12 65228620 65229072 -78557383 - L1PB4 LINE L1 -2605 4243 3800 369 0 0 0 chr12 65229072 65229113 -78557342 + (TG)n Simple_repeat Simple_repeat 2 42 0 12204 236 63 48 chr12 65229113 65232739 -78553716 - L1PB4 LINE L1 -3048 3800 69 2092 110 3 0 chr12 65232739 65233029 -78553426 - AluSx SINE Alu -21 291 1 12204 236 63 48 chr12 65233029 65233098 -78553357 - L1PB4 LINE L1 -6779 69 3 2285 252 98 24 chr12 65234238 65234987 -78551468 + L1ME2 LINE L1 122 925 -5471 619 223 83 6 chr12 65234968 65235190 -78551265 + L1ME2 LINE L1 2170 2372 -3843 * 2092 224 84 8 chr12 65235226 65235771 -78550684 + MLT1E2 LTR MaLR 58 624 -2 298 281 8 39 chr12 65235819 65235947 -78550508 + L1ME2 LINE L1 2432 2555 -3660 833 315 64 46 chr12 65235950 65236385 -78550070 + L1M3c LINE L1 1 443 -5698 226 232 73 0 chr12 65236378 65236460 -78549995 + L1M3c LINE L1 814 901 -5240 * 263 294 59 0 chr12 65236596 65236681 -78549774 + L1M3c LINE L1 814 903 -5238 255 281 22 34 chr12 65236650 65236739 -78549716 + L1M3c LINE L1 501 588 -5543 * 2277 209 82 42 chr12 65236993 65237616 -78548839 + L1M3c LINE L1 904 1559 -4582 1636 164 3 52 chr12 65237616 65237758 -78548697 + AluJb SINE Alu 1 148 -164 2186 100 3 3 chr12 65237758 65238049 -78548406 + AluSc SINE Alu 1 291 -18 1636 164 3 52 chr12 65238049 65238230 -78548225 + AluJb SINE Alu 148 308 -4 2277 209 82 42 chr12 65238230 65238300 -78548155 + L1M3c LINE L1 1559 1625 -4516 264 182 0 61 chr12 65238300 65238366 -78548089 + L1ME2 LINE L1 2675 2736 -3479 * 3101 195 44 35 chr12 65238355 65238492 -78547963 - L1MB8 LINE L1 -148 6030 5896 1891 127 48 3 chr12 65238492 65238784 -78547671 - AluSx SINE Alu -7 305 1 3101 195 44 35 chr12 65238784 65239759 -78546696 - L1MB8 LINE L1 -282 5896 4915 2335 244 79 11 chr12 65239753 65241025 -78545430 + L1ME2 LINE L1 4675 6039 -194 * 1110 119 197 5 chr12 65241836 65242029 -78544426 - MER30 DNA MER1_type 0 230 1 193 195 97 124 chr12 65242430 65242543 -78543912 - MIR SINE MIR 0 262 153 722 287 101 40 chr12 65244087 65244964 -78541491 + L1MEc LINE L1 832 1731 -4484 2073 229 24 58 chr12 65245108 65245655 -78540800 + MLT1F LTR MaLR 14 541 -1 694 293 89 23 chr12 65245661 65246116 -78540339 + MLT1F-int LTR MaLR 6 606 -765 365 292 47 35 chr12 65246401 65246572 -78539883 + MLT1F-int LTR MaLR 699 871 -500 282 307 11 101 chr12 65246742 65246921 -78539534 + MLT1F-int LTR MaLR 1023 1185 -186 979 150 85 14 chr12 65246926 65247174 -78539281 + Tigger7 DNA MER2_type 1 298 -2189 * 1932 136 26 18 chr12 65247170 65247509 -78538946 + Tigger7 DNA MER2_type 2120 2461 -26 270 195 26 76 chr12 65247549 65247677 -78538778 + MLT1F-int LTR MaLR 1246 1734 0 705 278 46 80 chr12 65247677 65247979 -78538476 + MLT1F LTR MaLR 1 292 -250 2440 263 121 22 chr12 65247998 65249249 -78537206 + L1MEc LINE L1 2675 4048 -2167 443 338 44 4 chr12 65249309 65249537 -78536918 + L1MEc LINE L1 4186 4422 -1793 421 206 0 0 chr12 65249547 65249639 -78536816 - L1MA4A LINE L1 -23 6280 6189 4945 139 27 2 chr12 65249645 65250550 -78535905 - L1MA4A LINE L1 -183 6120 5197 257 267 30 30 chr12 65250585 65250686 -78535769 + L1MEc LINE L1 4476 4576 -1639 624 229 0 130 chr12 65250730 65250953 -78535502 - MER58A DNA MER1_type -4 220 27 226 211 10 125 chr12 65250996 65251100 -78535355 + L1MC5 LINE L1 7191 7282 -679 763 195 117 32 chr12 65251116 65251398 -78535057 + L1MC5 LINE L1 7466 7771 -190 181 200 0 0 chr12 65251515 65251550 -78534905 + L2 LINE L2 3278 3312 -1 24 0 0 0 chr12 65254784 65254808 -78531647 + AT_rich Low_complexity Low_complexity 1 24 0 26 64 0 0 chr12 65254861 65254908 -78531547 + AT_rich Low_complexity Low_complexity 1 47 0 2104 118 7 3 chr12 65255377 65255674 -78530781 + AluSx SINE Alu 1 298 -14 268 325 208 33 chr12 65256638 65256850 -78529605 - MIR SINE MIR -10 252 4 21 36 0 0 chr12 65257360 65257388 -78529067 + AT_rich Low_complexity Low_complexity 1 28 0 422 290 41 7 chr12 65257478 65257623 -78528832 + L2 LINE L2 725 874 -2440 2106 310 132 11 chr12 65257623 65258368 -78528087 + L2 LINE L2 1808 2718 -596 2071 133 125 10 chr12 65258368 65258752 -78527703 - MSTA LTR MaLR 0 428 1 2106 310 132 11 chr12 65258752 65259049 -78527406 + L2 LINE L2 2718 2977 -337 276 235 59 37 chr12 65259055 65259191 -78527264 + L1ME4a LINE L1 5882 6020 -101 541 200 42 0 chr12 65259332 65259452 -78527003 + L1ME3A LINE L1 6039 6163 -7 2005 121 148 19 chr12 65259497 65259876 -78526579 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr12 65259887 65259918 -78526537 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr12 65260115 65260149 -78526306 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr12 65260401 65260425 -78526030 + AT_rich Low_complexity Low_complexity 1 24 0 238 150 50 0 chr12 65261229 65261269 -78525186 - MER58A DNA MER1_type -3 221 180 485 289 122 13 chr12 65261317 65261473 -78524982 - MER58A DNA MER1_type -51 173 1 2070 107 0 36 chr12 65261500 65261808 -78524647 - AluSc SINE Alu -12 297 1 227 381 0 0 chr12 65262219 65262303 -78524152 + L2 LINE L2 2877 2960 -312 222 246 16 0 chr12 65262415 65262476 -78523979 + L2 LINE L2 2998 3059 -213 257 316 0 0 chr12 65262787 65262844 -78523611 - L2 LINE L2 -20 3252 3196 311 309 32 11 chr12 65263099 65263193 -78523262 - MIR SINE MIR -71 191 96 21 71 0 0 chr12 65263493 65263535 -78522920 + AT_rich Low_complexity Low_complexity 1 42 0 898 227 107 23 chr12 65265798 65266106 -78520349 - MER46C DNA MER2_type -1 337 4 1929 147 7 3 chr12 65266225 65266531 -78519924 + AluSg SINE Alu 3 309 -1 312 268 106 7 chr12 65267489 65267631 -78518824 + L1ME LINE L1 4183 4338 -1808 777 249 33 6 chr12 65267652 65267833 -78518622 - MER58A DNA MER1_type -38 186 1 494 286 76 54 chr12 65268023 65268486 -78517969 + L1ME LINE L1 4613 5065 -1097 1697 125 90 0 chr12 65268486 65268764 -78517691 + AluSg SINE Alu 1 301 0 494 286 76 54 chr12 65268764 65269279 -78517176 + L1ME LINE L1 5065 5628 -534 22 0 0 0 chr12 65269586 65269608 -78516847 + AT_rich Low_complexity Low_complexity 1 22 0 2140 118 14 3 chr12 65269679 65269975 -78516480 + AluSx SINE Alu 1 299 -13 1775 182 0 16 chr12 65270011 65270324 -78516131 + AluJo SINE Alu 1 308 -4 539 248 124 0 chr12 65270631 65270768 -78515687 - MER5A DNA MER1_type -28 161 8 2104 122 3 0 chr12 65271262 65271558 -78514897 + AluSx SINE Alu 7 303 -9 1515 144 26 109 chr12 65272653 65272965 -78513490 - AluJb SINE Alu -26 286 1 336 237 8 59 chr12 65273328 65273446 -78513009 + L1MC5 LINE L1 7694 7805 -156 580 131 0 0 chr12 65273487 65273571 -78512884 - U6 snRNA snRNA -23 84 1 288 247 14 27 chr12 65273844 65273917 -78512538 + L2 LINE L2 3201 3272 0 363 252 84 30 chr12 65275331 65275462 -78510993 - MER91C DNA MER1_type -1 139 2 2952 170 163 14 chr12 65275858 65276633 -78509822 - Charlie1a DNA MER1_type -25 1430 541 1020 134 111 0 chr12 65276641 65276812 -78509643 - THE1B LTR MaLR 0 364 175 180 0 0 0 chr12 65276812 65276832 -78509623 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 10667 112 16 19 chr12 65276837 65283223 -78503232 - L1PA8 LINE L1 -3 6484 10 1110 123 34 11 chr12 65283233 65283412 -78503043 - THE1B LTR MaLR -181 183 1 10782 96 15 33 chr12 65283412 65285021 -78501434 - THE1B-int LTR MaLR 0 1580 1 2083 130 19 46 chr12 65285025 65285395 -78501060 - THE1B LTR MaLR -4 360 1 1912 168 98 64 chr12 65285448 65285918 -78500537 - Charlie1a DNA MER1_type -968 487 2 347 366 177 15 chr12 65285948 65286550 -78499905 + L2 LINE L2 2566 3267 -5 282 255 20 29 chr12 65286670 65286772 -78499683 + (TA)n Simple_repeat Simple_repeat 2 102 0 21 0 0 0 chr12 65286995 65287016 -78499439 + AT_rich Low_complexity Low_complexity 1 21 0 1594 162 14 35 chr12 65287312 65287602 -78498853 + AluJb SINE Alu 17 300 -12 28 48 0 0 chr12 65287604 65287646 -78498809 + AT_rich Low_complexity Low_complexity 1 42 0 26 88 0 0 chr12 65288528 65288596 -78497859 + AT_rich Low_complexity Low_complexity 1 68 0 1538 173 17 17 chr12 65290012 65290301 -78496154 - AluJb SINE Alu -23 289 1 22 70 0 0 chr12 65291476 65291519 -78494936 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr12 65292119 65292140 -78494315 + AT_rich Low_complexity Low_complexity 1 21 0 300 53 0 0 chr12 65293497 65293535 -78492920 + (TG)n Simple_repeat Simple_repeat 2 39 0 213 39 0 0 chr12 65295192 65295218 -78491237 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr12 65296467 65296488 -78489967 + AT_rich Low_complexity Low_complexity 1 21 0 2198 117 0 3 chr12 65297811 65298110 -78488345 + AluSq SINE Alu 3 300 -13 1205 134 18 51 chr12 65298137 65298354 -78488101 - MER2 DNA MER2_type -135 210 1 552 322 57 26 chr12 65298658 65298888 -78487567 + MIR SINE MIR 16 252 -10 587 228 6 32 chr12 65300213 65300371 -78486084 - Charlie2 DNA MER1_type -810 2052 1899 273 130 156 52 chr12 65300445 65300522 -78485933 - Charlie2 DNA MER1_type -2589 193 109 212 325 36 0 chr12 65301418 65301501 -78484954 - MIR SINE MIR -73 189 104 378 118 176 0 chr12 65301613 65301698 -78484757 - L1MB3 LINE L1 -9 6174 6075 595 236 142 30 chr12 65301763 65302030 -78484425 - MARNA DNA Mariner -77 509 213 522 348 145 33 chr12 65302034 65302454 -78484001 - L2 LINE L2 -2 3270 2804 994 316 94 40 chr12 65302493 65303184 -78483271 + L2 LINE L2 2584 3289 -24 784 285 63 60 chr12 65303197 65303548 -78482907 - L2 LINE L2 -839 2475 2124 323 330 201 11 chr12 65303678 65303857 -78482598 - L2 LINE L2 -2034 1280 1068 23329 83 15 6 chr12 65303936 65306591 -78479864 - L1PA7 LINE L1 0 6154 3449 1877 62 21 4 chr12 65306591 65306869 -78479586 - AluY SINE Alu 0 318 37 23329 83 15 6 chr12 65306869 65308341 -78478114 - L1PA7 LINE L1 -2705 3449 1992 432 278 113 0 chr12 65308364 65308515 -78477940 - L2 LINE L2 -8 3305 3138 1612 113 162 4 chr12 65309343 65309609 -78476846 - AluSg1 SINE Alu -1 308 1 661 203 123 0 chr12 65309801 65309939 -78476516 + MIR SINE MIR 7 161 -101 184 271 17 17 chr12 65310005 65310064 -78476391 + L2 LINE L2 1864 1922 -1392 186 331 159 36 chr12 65310097 65310348 -78476107 + L2 LINE L2 2213 2494 -820 227 311 75 47 chr12 65310720 65310809 -78475646 + L2 LINE L2 3157 3248 -24 725 228 211 0 chr12 65310809 65311055 -78475400 + MER5C DNA MER1_type 1 298 -26 403 309 44 44 chr12 65311202 65311383 -78475072 + MIR SINE MIR 6 186 -76 284 230 172 0 chr12 65314818 65314905 -78471550 - L2 LINE L2 -3 3269 3168 23 0 0 0 chr12 65315586 65315609 -78470846 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr12 65316383 65316430 -78470025 + AT_rich Low_complexity Low_complexity 1 47 0 1387 103 0 0 chr12 65316433 65316637 -78469818 - L1MA3 LINE L1 0 6305 6102 2267 98 0 23 chr12 65316820 65317125 -78469330 + AluSx SINE Alu 1 298 -14 2182 111 0 0 chr12 65317307 65317605 -78468850 + AluSx SINE Alu 1 298 -14 202 116 93 0 chr12 65318193 65318236 -78468219 - L2 LINE L2 -5 3308 3262 306 367 87 56 chr12 65318294 65318857 -78467598 - L2 LINE L2 -5 3267 2681 34 0 0 0 chr12 65319588 65319622 -78466833 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr12 65320179 65320208 -78466247 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 65320654 65320682 -78465773 + AT_rich Low_complexity Low_complexity 1 28 0 725 155 62 43 chr12 65321059 65321220 -78465235 + MER106A DNA MER1_type 2 165 -71 243 0 0 0 chr12 65321239 65321266 -78465189 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 3285 213 24 3 chr12 65322525 65323159 -78463296 + MER82 DNA MER2_type 7 653 0 205 182 0 0 chr12 65323701 65323745 -78462710 + T-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 65323974 65323997 -78462458 + AT_rich Low_complexity Low_complexity 1 23 0 454 318 125 65 chr12 65326044 65326644 -78459811 - L2 LINE L2 -485 2829 2194 485 289 23 0 chr12 65326653 65326781 -78459674 + MER94 DNA DNA 1 131 -3 518 349 188 27 chr12 65326908 65327498 -78458957 - L2 LINE L2 -1299 2015 1522 1886 146 3 16 chr12 65327498 65327813 -78458642 - AluJb SINE Alu -1 311 1 518 349 188 27 chr12 65327813 65328228 -78458227 - L2 LINE L2 -1792 1522 1175 1679 167 17 13 chr12 65328228 65328528 -78457927 + AluJb SINE Alu 1 301 -11 518 349 188 27 chr12 65328528 65328747 -78457708 - L2 LINE L2 -2139 1175 592 29 0 0 0 chr12 65330468 65330497 -78455958 + AT_rich Low_complexity Low_complexity 1 29 0 1647 170 121 55 chr12 65332656 65332959 -78453496 + Looper DNA T2_type 1 345 -1213 2092 125 26 0 chr12 65332959 65333262 -78453193 - AluSx SINE Alu -1 311 1 1647 170 121 55 chr12 65333262 65333411 -78453044 + Looper DNA T2_type 345 483 -1075 265 122 0 24 chr12 65333411 65333452 -78453003 + 5S rRNA rRNA 2 41 -80 2888 172 22 111 chr12 65333537 65333948 -78452507 + Looper DNA T2_type 790 1089 -469 2168 86 3 20 chr12 65333948 65334250 -78452205 + AluSc SINE Alu 1 297 -12 2888 172 22 111 chr12 65334250 65334682 -78451773 + Looper DNA T2_type 1089 1558 0 188 0 74 0 chr12 65334731 65334758 -78451697 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3404 98 38 84 chr12 65334758 65335414 -78451041 - L1MA1 LINE L1 -10 6292 5667 319 167 0 33 chr12 65335535 65335595 -78450860 + L1MC4 LINE L1 6616 6673 -1369 339 336 143 13 chr12 65336156 65336434 -78450021 - L1MD1 LINE L1 -381 5861 5545 473 309 100 8 chr12 65336442 65336891 -78449564 - L1MD1 LINE L1 -2298 3848 3350 1944 133 0 0 chr12 65336958 65337237 -78449218 + AluSc SINE Alu 1 279 -30 288 365 91 14 chr12 65338389 65338608 -78447847 - L2 LINE L2 -485 2829 2594 29 0 0 0 chr12 65339297 65339326 -78447129 + AT_rich Low_complexity Low_complexity 1 29 0 32 29 0 0 chr12 65340587 65340621 -78445834 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr12 65341178 65341207 -78445248 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 65341648 65341675 -78444780 + AT_rich Low_complexity Low_complexity 1 27 0 1596 164 10 10 chr12 65341682 65341974 -78444481 - AluJb SINE Alu -20 292 1 399 274 112 24 chr12 65341986 65342282 -78444173 - L1MD1 LINE L1 -2984 3162 2841 231 114 0 0 chr12 65343486 65343521 -78442934 + (TTGG)n Simple_repeat Simple_repeat 4 38 0 765 239 69 36 chr12 65343982 65344258 -78442197 + MER2 DNA MER2_type 60 344 -1 590 277 115 43 chr12 65344363 65344598 -78441857 + MIR SINE MIR 11 262 0 354 156 0 0 chr12 65345553 65345617 -78440838 + (TA)n Simple_repeat Simple_repeat 1 64 0 1149 343 134 33 chr12 65346155 65347572 -78438883 - L2 LINE L2 -220 3052 1484 204 40 0 0 chr12 65349651 65349676 -78436779 + (T)n Simple_repeat Simple_repeat 1 25 0 389 281 70 18 chr12 65349962 65350076 -78436379 - L2 LINE L2 -1 3312 3193 1663 158 17 34 chr12 65350360 65350657 -78435798 + AluJb SINE Alu 3 294 -18 262 294 130 11 chr12 65350705 65350797 -78435658 + MIR SINE MIR 53 155 -107 * 941 228 19 9 chr12 65350790 65351005 -78435450 - MIR SINE MIR -1 261 45 212 146 104 0 chr12 65351026 65351074 -78435381 + MIR SINE MIR 152 204 -58 27 73 0 0 chr12 65351241 65351296 -78435159 + AT_rich Low_complexity Low_complexity 1 55 0 751 125 0 0 chr12 65351418 65351544 -78434911 - FRAM SINE Alu 0 168 43 368 246 119 0 chr12 65351881 65351999 -78434456 - MER97b DNA MER1_type? -875 178 47 23 54 0 0 chr12 65354514 65354551 -78431904 + AT_rich Low_complexity Low_complexity 1 37 0 765 201 44 6 chr12 65354650 65354809 -78431646 + MLT1F1 LTR MaLR 390 554 -13 264 273 57 11 chr12 65354812 65354900 -78431555 - MIR3 SINE MIR -29 179 88 445 223 32 0 chr12 65355041 65355135 -78431320 - L2 LINE L2 0 3313 3217 1647 162 57 46 chr12 65355325 65355695 -78430760 - MLT1A2 LTR MaLR 0 374 1 12428 131 81 28 chr12 65355721 65358019 -78428436 - Tigger1 DNA MER2_type 0 2418 1 1591 163 32 18 chr12 65358021 65358318 -78428137 - AluJb SINE Alu 0 301 1 344 175 0 0 chr12 65358555 65358612 -78427843 - MLT2B1 LTR ERVL 0 520 464 190 130 0 43 chr12 65358636 65358682 -78427773 + (TA)n Simple_repeat Simple_repeat 2 45 0 2048 186 43 50 chr12 65358682 65359165 -78427290 - MLT2B1 LTR ERVL -40 480 1 196 297 279 0 chr12 65359174 65359285 -78427170 + MIR SINE MIR 4 145 -117 195 225 130 43 chr12 65359766 65359904 -78426551 + L2 LINE L2 2886 3035 -237 292 269 37 0 chr12 65360747 65360855 -78425600 + MLT1L LTR MaLR 164 275 -340 271 307 88 9 chr12 65361580 65361694 -78424761 + L1MCa LINE L1 347 469 -5947 697 105 0 0 chr12 65361860 65361955 -78424500 - LTR8 LTR ERV1 -8 683 589 10861 216 46 15 chr12 65361967 65366227 -78420228 + L1PB1 LINE L1 1857 6217 -3 995 212 43 73 chr12 65366223 65366251 -78420204 + L1MCa LINE L1 2230 2257 -4350 * 2100 115 0 7 chr12 65366251 65366562 -78419893 + AluSq SINE Alu 1 309 0 995 212 43 73 chr12 65366562 65366943 -78419512 + L1MCa LINE L1 2257 2671 -3936 766 230 189 14 chr12 65366970 65367225 -78419230 + L1MCa LINE L1 2973 3305 -3121 2237 71 0 0 chr12 65367225 65367508 -78418947 + AluY SINE Alu 1 283 -28 766 230 189 14 chr12 65367508 65367596 -78418859 + L1MCa LINE L1 3305 3376 -3050 265 332 15 49 chr12 65367626 65367831 -78418624 + L1MD2 LINE L1 782 979 -5417 1113 247 40 3 chr12 65367874 65368198 -78418257 + L1MD2 LINE L1 4989 5324 -1082 * 2255 206 72 88 chr12 65368184 65368956 -78417499 + L1MD2 LINE L1 5729 6488 -14 2112 92 14 0 chr12 65368958 65369271 -78417184 - AluSp SINE Alu 0 317 1 1001 244 42 52 chr12 65369275 65369848 -78416607 + L1ME LINE L1 1221 2022 -4384 1365 255 33 44 chr12 65369853 65370059 -78416396 + LTR40c LTR ERVL 3 210 -255 1479 96 5 5 chr12 65370059 65370258 -78416197 - AluSp SINE Alu -6 307 109 1365 255 33 44 chr12 65370258 65370506 -78415949 + LTR40c LTR ERVL 210 452 -13 804 283 37 21 chr12 65370518 65370949 -78415506 + L1ME LINE L1 2066 2503 -4084 1010 184 93 43 chr12 65370969 65371247 -78415208 - MLT1C LTR MaLR -17 450 159 945 141 0 136 chr12 65371248 65371461 -78414994 - AluSc SINE Alu -10 299 116 620 148 148 0 chr12 65371475 65371617 -78414838 + L1MB2 LINE L1 6008 6170 -1 227 183 67 33 chr12 65371725 65371785 -78414670 + L1 LINE L1 3883 3944 -2202 * 3318 172 14 72 chr12 65371781 65372769 -78413686 - L1MA10 LINE L1 0 6334 5425 * 4453 179 8 27 chr12 65372768 65372807 -78413648 + L1 LINE L1 4242 4280 -1866 2344 76 0 13 chr12 65372807 65373110 -78413345 + AluSc SINE Alu 1 299 -10 4453 179 8 27 chr12 65373110 65373279 -78413176 + L1 LINE L1 4280 4451 -1695 2866 159 3 95 chr12 65373279 65373332 -78413123 - MLT2B3 LTR ERVL 0 554 498 606 12 24 12 chr12 65373332 65373416 -78413039 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 2866 159 3 95 chr12 65373416 65373972 -78412483 - MLT2B3 LTR ERVL -56 498 1 4453 179 8 27 chr12 65373972 65374943 -78411512 + L1 LINE L1 4451 5403 -743 782 231 78 4 chr12 65374941 65375196 -78411259 + L1 LINE L1 3934 4207 -1939 * 1894 234 95 30 chr12 65375199 65376047 -78410408 - L1MEc LINE L1 -4934 1376 533 512 156 14 71 chr12 65376047 65376188 -78410267 + L1 LINE L1 5231 5363 -783 1219 280 48 19 chr12 65376213 65376691 -78409764 - L1MEc LINE L1 -5866 530 39 284 202 64 32 chr12 65376692 65376786 -78409669 + MLT1J LTR MaLR 409 505 -6 2081 113 0 11 chr12 65377210 65377521 -78408934 + AluSx SINE Alu 1 308 0 363 44 0 0 chr12 65377679 65377724 -78408731 + (TC)n Simple_repeat Simple_repeat 2 46 0 2185 114 0 3 chr12 65377724 65378031 -78408424 - AluSx SINE Alu -6 306 1 4714 218 72 57 chr12 65378837 65380567 -78405888 + L1M2 LINE L1 10 1774 -5075 2195 113 3 0 chr12 65380567 65380858 -78405597 - AluSx SINE Alu -20 292 1 4714 218 72 57 chr12 65380858 65381133 -78405322 + L1M2 LINE L1 1774 2044 -4805 768 261 54 15 chr12 65381264 65381467 -78404988 + MIR SINE MIR 15 225 -37 200 256 78 44 chr12 65381455 65381545 -78404910 + L2 LINE L2 3217 3309 -4 * 231 314 47 12 chr12 65381665 65381751 -78404704 - L2 LINE L2 -16 3256 3168 262 308 96 0 chr12 65382868 65383014 -78403441 - L1ME4a LINE L1 -2 6119 5960 4128 94 73 12 chr12 65383017 65383648 -78402807 - L1PA13 LINE L1 -2 6864 6192 2421 73 0 25 chr12 65383648 65383963 -78402492 - AluSg SINE Alu -3 307 1 4128 94 73 12 chr12 65383963 65383978 -78402477 - L1PA13 LINE L1 -674 6192 6179 1178 122 6 28 chr12 65383978 65384158 -78402297 - AluSg/x SINE Alu -21 289 114 14272 191 17 12 chr12 65384158 65387897 -78398558 - L1PA13 LINE L1 -693 6173 2456 2196 121 3 0 chr12 65387897 65388187 -78398268 + AluSg SINE Alu 2 292 -18 14272 191 17 12 chr12 65388187 65388891 -78397564 - L1PA13 LINE L1 -4410 2456 1757 1617 165 79 7 chr12 65388891 65389170 -78397285 - AluSx SINE Alu -13 299 1 14272 191 17 12 chr12 65389170 65389822 -78396633 - L1PA13 LINE L1 -5109 1757 1057 1065 134 5 85 chr12 65389822 65390000 -78396455 - L1M3 LINE L1 -390 5781 5623 2262 125 3 6 chr12 65390000 65390313 -78396142 - AluSp SINE Alu -1 312 1 1065 134 5 85 chr12 65390313 65390358 -78396097 - L1M3 LINE L1 -548 5623 5576 1215 182 80 177 chr12 65390373 65391064 -78395391 - LTR8A LTR ERV1 -103 624 1 2085 110 9 21 chr12 65391072 65391398 -78395057 - THE1B LTR MaLR 0 364 43 593 139 0 0 chr12 65391398 65391484 -78394971 - AluSg/x SINE Alu -15 297 212 318 94 19 0 chr12 65391486 65391539 -78394916 - THE1B LTR MaLR -374 54 1 308 301 12 0 chr12 65391539 65391615 -78394840 - MLT1J LTR MaLR -332 179 103 2255 102 0 0 chr12 65391641 65391979 -78394476 - AluSx SINE Alu 0 338 1 1533 203 83 3 chr12 65393125 65393451 -78393004 + MLT-int LTR MaLR 1241 1592 -143 220 315 43 22 chr12 65394063 65394155 -78392300 + L2 LINE L2 3220 3313 0 22 35 0 0 chr12 65394213 65394242 -78392213 + AT_rich Low_complexity Low_complexity 1 29 0 1883 154 46 35 chr12 65394273 65394644 -78391811 - THE1C LTR MaLR 0 375 1 666 174 5 84 chr12 65394708 65394898 -78391557 + MER20 DNA MER1_type 45 219 0 311 219 55 0 chr12 65395195 65395268 -78391187 - MIR SINE MIR -146 116 40 1389 111 0 0 chr12 65396823 65397004 -78389451 - AluSc SINE Alu -9 300 120 874 276 38 16 chr12 65397492 65397858 -78388597 - L1MDb LINE L1 -4384 2022 1649 345 234 15 93 chr12 65397860 65398065 -78388390 - L1MDb LINE L1 -5022 1387 1221 1801 142 14 0 chr12 65398069 65398381 -78388074 + AluSp SINE Alu 1 316 0 480 223 54 40 chr12 65398384 65398532 -78387923 - L1MD2 LINE L1 -16 6343 6194 2243 107 3 7 chr12 65399950 65400250 -78386205 + AluSq SINE Alu 1 299 -14 41 48 0 0 chr12 65400285 65400347 -78386108 + AT_rich Low_complexity Low_complexity 1 62 0 255 174 0 0 chr12 65400347 65400393 -78386062 - L1M3 LINE L1 -576 5607 5562 1984 137 0 3 chr12 65400561 65400854 -78385601 - AluSx SINE Alu -20 292 1 1350 166 0 0 chr12 65401014 65401225 -78385230 + AluJb SINE Alu 91 301 -11 321 298 97 30 chr12 65401288 65401660 -78384795 + L1ME LINE L1 3971 4367 -1779 957 211 82 0 chr12 65401765 65401799 -78384656 + AluJb SINE Alu 84 114 -198 237 108 0 0 chr12 65401799 65401836 -78384619 + (CAA)n Simple_repeat Simple_repeat 3 39 0 957 211 82 0 chr12 65401836 65401995 -78384460 + AluJb SINE Alu 114 293 -19 244 234 0 108 chr12 65402036 65402194 -78384261 + L1ME LINE L1 4489 4629 -1517 549 207 84 44 chr12 65403771 65403974 -78382481 + MER92B LTR ERV1 426 636 0 1152 210 126 47 chr12 65404113 65404541 -78381914 - MLT1C LTR MaLR -3 464 3 341 122 0 0 chr12 65404666 65404715 -78381740 + Alu SINE Alu 236 284 -17 2351 98 0 0 chr12 65404828 65405125 -78381330 - AluSx SINE Alu -15 297 1 22 0 0 0 chr12 65405274 65405296 -78381159 + AT_rich Low_complexity Low_complexity 1 22 0 2095 135 19 38 chr12 65405306 65405676 -78380779 - THE1B LTR MaLR 0 364 2 1689 181 4 7 chr12 65405676 65405952 -78380503 - AluJo SINE Alu -31 281 7 499 304 80 11 chr12 65407009 65407430 -78379025 + L1ME LINE L1 5140 5585 -581 547 302 99 40 chr12 65407489 65407933 -78378522 - L1M4 LINE L1 -6065 477 8 216 286 0 0 chr12 65408278 65408327 -78378128 + MER5B DNA MER1_type 126 174 -4 * 514 257 0 37 chr12 65408318 65408454 -78378001 - L2 LINE L2 -683 2631 2501 1693 174 3 26 chr12 65408930 65409234 -78377221 - AluJo SINE Alu -15 297 1 271 296 158 69 chr12 65409949 65409999 -78376456 + L2 LINE L2 2140 2184 -1130 1270 231 117 0 chr12 65409999 65410307 -78376148 - MER2 DNA MER2_type 0 344 1 271 296 158 69 chr12 65410307 65410679 -78375776 + L2 LINE L2 2184 2600 -714 225 0 0 0 chr12 65411366 65411391 -78375064 + (CA)n Simple_repeat Simple_repeat 2 26 0 1506 188 42 7 chr12 65411797 65412085 -78374370 + AluJo SINE Alu 1 298 -14 1293 194 37 4 chr12 65412395 65412637 -78373818 - AluJo SINE Alu -62 250 1 189 74 0 0 chr12 65413424 65413451 -78373004 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 1368 272 68 57 chr12 65413542 65414388 -78372067 - L2 LINE L2 0 3313 2456 530 281 87 28 chr12 65414374 65414603 -78371852 + MIR SINE MIR 15 261 -1 * 230 333 78 29 chr12 65414874 65414976 -78371479 + MIR SINE MIR 20 126 -82 1643 176 0 55 chr12 65415247 65415440 -78371015 - AluJb SINE Alu 0 312 143 2285 109 0 0 chr12 65415440 65415742 -78370713 - AluSg SINE Alu -8 302 1 1643 176 0 55 chr12 65415742 65415878 -78370577 - AluJb SINE Alu -169 143 1 26 82 0 0 chr12 65416941 65417002 -78369453 + AT_rich Low_complexity Low_complexity 1 61 0 38 0 0 20 chr12 65417776 65417797 -78368658 + AT_rich Low_complexity Low_complexity 1 21 -27 2088 119 7 3 chr12 65417797 65418090 -78368365 - AluSx SINE Alu -18 294 1 38 0 0 20 chr12 65418090 65418117 -78368338 + AT_rich Low_complexity Low_complexity 21 48 0 488 314 115 24 chr12 65418165 65418452 -78368003 + L1ME4a LINE L1 5632 5944 -177 2671 238 32 46 chr12 65419175 65419766 -78366689 - L1ME1 LINE L1 -5 6161 5563 2090 146 0 3 chr12 65419766 65420074 -78366381 + AluSx SINE Alu 1 307 -5 2671 238 32 46 chr12 65420074 65420359 -78366096 - L1ME1 LINE L1 -603 5563 5290 4776 11 7 13 chr12 65420359 65420915 -78365540 - L1PA3 LINE L1 -1 6154 5602 2671 238 32 46 chr12 65420915 65421001 -78365454 - L1ME1 LINE L1 -876 5290 5204 317 191 48 0 chr12 65421016 65421100 -78365355 - L1ME1 LINE L1 -1037 5109 5022 24 0 0 0 chr12 65421466 65421490 -78364965 + AT_rich Low_complexity Low_complexity 1 24 0 2115 68 0 0 chr12 65421966 65422215 -78364240 - AluY SINE Alu -4 307 59 22 56 0 0 chr12 65423782 65423818 -78362637 + AT_rich Low_complexity Low_complexity 1 36 0 189 74 0 0 chr12 65424624 65424651 -78361804 + (TG)n Simple_repeat Simple_repeat 2 28 0 182 348 11 56 chr12 65425197 65425286 -78361169 - MIR SINE MIR -176 86 2 444 168 67 25 chr12 65425433 65425552 -78360903 - HsTC2a DNA Tc2 -8 734 611 * 1173 229 63 61 chr12 65425544 65425971 -78360484 - HsTC2a DNA Tc2 -316 428 1 26 0 0 0 chr12 65426049 65426075 -78360380 + AT_rich Low_complexity Low_complexity 1 26 0 207 69 0 0 chr12 65426539 65426568 -78359887 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 65427516 65427544 -78358911 + AT_rich Low_complexity Low_complexity 1 28 0 387 308 81 6 chr12 65427614 65427786 -78358669 + L1ME LINE L1 5479 5663 -458 21 0 0 0 chr12 65427858 65427879 -78358576 + AT_rich Low_complexity Low_complexity 1 21 0 1144 73 0 0 chr12 65427879 65428029 -78358426 - L1PA7 LINE L1 0 6154 6005 275 307 53 33 chr12 65428221 65428371 -78358084 + L2 LINE L2 2593 2745 -569 183 186 47 0 chr12 65428582 65428625 -78357830 + L2 LINE L2 3047 3091 -181 225 349 47 0 chr12 65428828 65428934 -78357521 - L2 LINE L2 0 3272 3162 30 45 0 0 chr12 65429194 65429238 -78357217 + AT_rich Low_complexity Low_complexity 1 44 0 180 283 0 19 chr12 65430282 65430335 -78356120 - L3 LINE CR1 -989 588 537 2075 132 7 0 chr12 65430890 65431200 -78355255 + AluSq SINE Alu 1 312 -1 491 254 142 12 chr12 65431758 65431927 -78354528 + MIR SINE MIR 1 191 -71 180 0 0 0 chr12 65431956 65431976 -78354479 + (A)n Simple_repeat Simple_repeat 1 20 0 26 50 0 0 chr12 65432617 65432657 -78353798 + AT_rich Low_complexity Low_complexity 1 40 0 1871 101 14 71 chr12 65433175 65433471 -78352984 - AluSq SINE Alu -32 281 3 1326 158 68 26 chr12 65433601 65433828 -78352627 + MER33 DNA MER1_type 1 246 -2339 1711 204 0 6 chr12 65433828 65434142 -78352313 - AluJo SINE Alu 0 312 1 1326 158 68 26 chr12 65434142 65434225 -78352230 + MER33 DNA MER1_type 246 324 0 613 273 76 95 chr12 65434558 65435125 -78351330 + LTR67 LTR ERVL 2 557 0 381 213 57 66 chr12 65435233 65435355 -78351100 + MER5B DNA MER1_type 4 124 -54 2345 58 34 0 chr12 65435356 65435647 -78350808 - AluY SINE Alu -10 301 1 1287 108 5 16 chr12 65435784 65436024 -78350431 + AluSg/x SINE Alu 99 336 0 335 301 12 0 chr12 65436050 65436126 -78350329 + MLT1J LTR MaLR 103 179 -332 335 94 19 0 chr12 65436126 65436179 -78350276 + THE1B LTR MaLR 1 54 -374 590 139 0 0 chr12 65436181 65436267 -78350188 + AluSg/x SINE Alu 210 295 -15 2050 129 12 21 chr12 65436267 65436592 -78349863 + THE1B LTR MaLR 43 364 0 22 0 0 0 chr12 65436602 65436624 -78349831 + AT_rich Low_complexity Low_complexity 1 22 0 2256 108 7 3 chr12 65436773 65437079 -78349376 + AluSq SINE Alu 1 307 -6 722 311 5 0 chr12 65437079 65437285 -78349170 - LTR40c LTR ERVL -256 209 3 1091 257 38 16 chr12 65437290 65437656 -78348799 - L1MDb LINE L1 -4384 2022 1649 433 217 7 84 chr12 65437658 65437863 -78348592 - L1MDb LINE L1 -5022 1387 1221 2105 93 18 0 chr12 65437867 65438179 -78348276 + AluSp SINE Alu 1 317 0 614 230 14 0 chr12 65438181 65438329 -78348126 - L1MD2 LINE L1 -16 6343 6194 560 263 38 8 chr12 65438473 65438713 -78347742 + L1MEc LINE L1 2062 2308 -4088 1008 184 93 43 chr12 65438737 65439015 -78347440 - MLT1C LTR MaLR -17 450 159 1632 122 12 137 chr12 65439016 65439359 -78347096 - AluSx SINE Alu -10 302 3 1127 151 59 9 chr12 65439489 65439708 -78346747 + MER33 DNA MER1_type 1 230 -94 507 207 22 37 chr12 65439715 65439850 -78346605 - FRAM SINE Alu -3 173 41 2262 103 0 7 chr12 65440406 65440706 -78345749 + AluSg SINE Alu 2 299 -11 671 313 90 31 chr12 65440918 65441362 -78345093 + L1M4 LINE L1 8 477 -6065 243 297 97 28 chr12 65441421 65441566 -78344889 - L1ME LINE L1 -581 5585 5431 264 235 59 37 chr12 65441806 65441942 -78344513 - L1ME4a LINE L1 -101 6020 5882 678 329 92 3 chr12 65441948 65442243 -78344212 - L2 LINE L2 -337 2977 2657 2080 137 131 8 chr12 65442245 65442626 -78343829 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr12 65442637 65442668 -78343787 + AT_rich Low_complexity Low_complexity 1 31 0 180 152 0 0 chr12 65442853 65442886 -78343569 + CT-rich Low_complexity Low_complexity 2 34 0 298 337 17 17 chr12 65442929 65443304 -78343151 + CT-rich Low_complexity Low_complexity 1 374 0 8844 109 18 6 chr12 65443482 65444900 -78341555 - L1P LINE L1 -2546 3600 2165 290 352 190 14 chr12 65445022 65445533 -78340922 - L2 LINE L2 -1321 1993 1393 2060 109 6 22 chr12 65445591 65445904 -78340551 - AluSc SINE Alu -1 308 1 1126 205 28 0 chr12 65445911 65446165 -78340290 - Looper DNA T2_type -358 1200 940 225 349 47 0 chr12 65446334 65446440 -78340015 + L2 LINE L2 3162 3272 0 183 186 47 0 chr12 65446643 65446686 -78339769 - L2 LINE L2 -181 3091 3047 275 307 53 33 chr12 65446897 65447047 -78339408 - L2 LINE L2 -569 2745 2593 863 71 32 8 chr12 65447238 65447364 -78339091 + L1PA7 LINE L1 6005 6133 -21 607 273 76 97 chr12 65448225 65448793 -78337662 + LTR67 LTR ERVL 2 557 0 705 197 49 81 chr12 65448974 65449332 -78337123 - L1MCa LINE L1 -3815 2627 2257 2130 115 0 7 chr12 65449332 65449643 -78336812 - AluSq SINE Alu 0 309 1 705 197 49 81 chr12 65449643 65449671 -78336784 - L1MCa LINE L1 -4185 2257 2230 * 1319 125 125 3 chr12 65449667 65449979 -78336476 - L1PB1 LINE L1 -3 6148 5799 328 40 40 0 chr12 65450439 65450489 -78335966 + (GA)n Simple_repeat Simple_repeat 2 53 0 2053 109 0 14 chr12 65450654 65450966 -78335489 - AluSx SINE Alu 0 308 1 193 185 0 0 chr12 65451116 65451143 -78335312 + C-rich Low_complexity Low_complexity 1 27 0 220 262 10 39 chr12 65451157 65451260 -78335195 + (CGGGG)n Simple_repeat Simple_repeat 5 104 0 23 78 0 0 chr12 65451264 65451315 -78335140 + GC_rich Low_complexity Low_complexity 1 51 0 205 301 0 29 chr12 65451443 65451546 -78334909 + G-rich Low_complexity Low_complexity 43 142 0 532 298 121 5 chr12 65451708 65452137 -78334318 + L1M4 LINE L1 3370 3848 -2298 21 71 0 0 chr12 65453368 65453410 -78333045 + AT_rich Low_complexity Low_complexity 1 42 0 461 223 42 102 chr12 65454511 65454612 -78331843 + MER5B DNA MER1_type 21 110 -68 2195 76 38 0 chr12 65454612 65454902 -78331553 - AluY SINE Alu -10 301 1 461 223 42 102 chr12 65454902 65454966 -78331489 + MER5B DNA MER1_type 110 176 -2 * 519 257 0 37 chr12 65454966 65455090 -78331365 - L2 LINE L2 -695 2619 2501 410 67 0 13 chr12 65455863 65455938 -78330517 + AluSp/q SINE Alu 240 313 0 42 0 0 0 chr12 65455938 65455980 -78330475 + AT_rich Low_complexity Low_complexity 1 42 0 279 179 192 13 chr12 65456547 65456698 -78329757 + AluSp SINE Alu 1 178 -125 1234 225 31 7 chr12 65457221 65457514 -78328941 + AluSg SINE Alu 1 300 0 332 125 21 0 chr12 65457514 65457562 -78328893 + (TA)n Simple_repeat Simple_repeat 2 50 0 276 254 0 0 chr12 65458756 65458811 -78327644 + MIR SINE MIR 48 102 -160 658 152 72 148 chr12 65458868 65459105 -78327350 + MER46A DNA MER2_type 18 236 0 551 167 53 18 chr12 65459342 65459456 -78326999 - FLAM_A SINE Alu -5 137 20 2004 148 6 6 chr12 65459654 65459965 -78326490 - AluSx SINE Alu -1 311 1 27 0 0 0 chr12 65460079 65460106 -78326349 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr12 65461723 65461756 -78324699 + AT_rich Low_complexity Low_complexity 1 33 0 2330 65 14 14 chr12 65462247 65462541 -78323914 - AluY SINE Alu -17 294 1 722 98 0 2 chr12 65462709 65462958 -78323497 + AluSx SINE Alu 1 295 -15 2027 137 23 0 chr12 65464073 65464372 -78322083 + AluSx SINE Alu 1 306 -6 521 298 48 11 chr12 65464484 65464672 -78321783 - MIR SINE MIR -60 202 8 233 347 10 20 chr12 65464673 65464771 -78321684 + MER5B DNA MER1_type 13 109 -69 365 331 32 26 chr12 65464923 65465077 -78321378 - MIR SINE MIR -105 157 3 26 0 0 0 chr12 65466186 65466212 -78320243 + AT_rich Low_complexity Low_complexity 1 26 0 2138 129 0 3 chr12 65466572 65466882 -78319573 - AluSx SINE Alu -3 309 1 1677 198 3 10 chr12 65467136 65467450 -78319005 + AluJo SINE Alu 1 312 0 30 0 0 0 chr12 65468377 65468407 -78318048 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr12 65468527 65468554 -78317901 + AT_rich Low_complexity Low_complexity 1 27 0 527 163 92 0 chr12 65468554 65468652 -78317803 - U6 snRNA snRNA 0 107 1 279 324 15 0 chr12 65468888 65468956 -78317499 + L2 LINE L2 3203 3271 -1 30 0 0 0 chr12 65469354 65469384 -78317071 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr12 65470405 65470441 -78316014 + AT_rich Low_complexity Low_complexity 1 36 0 1698 166 42 7 chr12 65471251 65471535 -78314920 - AluJb SINE Alu -18 294 1 1645 179 41 0 chr12 65471569 65471860 -78314595 - AluJo SINE Alu -7 305 3 2505 52 0 10 chr12 65471900 65472208 -78314247 + AluY SINE Alu 1 305 -6 1998 198 35 31 chr12 65472227 65472422 -78314033 + MSTB LTR MaLR 1 194 -232 2525 64 0 6 chr12 65472422 65472735 -78313720 + AluY SINE Alu 1 311 0 1998 198 35 31 chr12 65472735 65472963 -78313492 + MSTB LTR MaLR 194 426 0 281 331 16 63 chr12 65472995 65473122 -78313333 - MIR SINE MIR -71 137 17 933 188 39 0 chr12 65473128 65473309 -78313146 - MER5A DNA MER1_type -1 188 1 280 122 0 0 chr12 65473770 65473811 -78312644 - MLT1G LTR MaLR -9 581 541 368 231 119 3 chr12 65473857 65474000 -78312455 - MLT1H1 LTR MaLR -428 167 1 270 353 45 49 chr12 65474182 65474406 -78312049 - L2 LINE L2 -1 3271 3049 2054 162 55 62 chr12 65475860 65476329 -78310126 - MLT1D LTR MaLR -39 466 1 444 313 159 14 chr12 65476758 65476966 -78309489 - MIR SINE MIR -3 259 22 194 224 69 69 chr12 65478642 65478700 -78307755 - L2 LINE L2 -36 3236 3179 1012 283 71 58 chr12 65478927 65479112 -78307343 - MLT1H1 LTR MaLR -1 554 373 886 141 0 59 chr12 65479112 65479247 -78307208 + FLAM_C SINE Alu 2 128 -5 1012 283 71 58 chr12 65479247 65479608 -78306847 - MLT1H1 LTR MaLR -182 373 1 317 253 52 143 chr12 65479630 65479960 -78306495 - MLT1H1-int LTR MaLR -21 1714 1081 1297 229 82 44 chr12 65479989 65480430 -78306025 - MLT1G LTR MaLR -106 461 1 351 96 0 0 chr12 65480638 65480690 -78305765 + (GA)n Simple_repeat Simple_repeat 1 52 0 701 146 71 188 chr12 65480729 65480969 -78305486 + MER58C DNA MER1_type 4 215 0 910 161 0 0 chr12 65481202 65481345 -78305110 + FLAM_C SINE Alu 1 143 0 191 282 73 81 chr12 65481362 65481596 -78304859 + L2 LINE L2 2720 2951 -363 2038 119 0 24 chr12 65481849 65482144 -78304311 + AluSx SINE Alu 1 288 -24 213 39 0 0 chr12 65482155 65482181 -78304274 + (CA)n Simple_repeat Simple_repeat 2 27 0 1881 164 0 4 chr12 65482610 65482890 -78303565 + AluJb SINE Alu 1 279 -33 852 144 0 0 chr12 65483644 65483762 -78302693 + FLAM_C SINE Alu 1 118 -15 2194 105 0 3 chr12 65483853 65484139 -78302316 - AluSx SINE Alu -27 285 1 617 211 8 8 chr12 65484145 65484278 -78302177 - MER5B DNA MER1_type -45 133 1 1252 183 13 109 chr12 65485347 65485552 -78300903 + L1M4c LINE L1 14 160 -6382 1384 175 67 26 chr12 65485552 65485820 -78300635 - AluJo SINE Alu -30 282 4 1252 183 13 109 chr12 65485820 65485962 -78300493 + L1M4c LINE L1 160 314 -6228 1717 138 37 40 chr12 65485989 65486163 -78300292 - AluJo SINE Alu -5 307 133 1923 149 7 3 chr12 65486163 65486452 -78300003 - AluJb SINE Alu -16 296 7 1717 138 37 40 chr12 65486452 65486573 -78299882 - AluJo SINE Alu -179 133 13 769 229 70 55 chr12 65486573 65486973 -78299482 + L1M4c LINE L1 1967 2511 -4314 2778 235 36 10 chr12 65487598 65488401 -78298054 + L1M4c LINE L1 2529 3312 -3332 182 246 140 0 chr12 65488401 65488458 -78297997 + MIR SINE MIR 124 188 -74 2636 39 0 0 chr12 65488892 65489203 -78297252 - AluY SINE Alu 0 311 1 686 198 0 0 chr12 65489285 65489406 -78297049 + MER58B DNA MER1_type 218 338 -3 390 213 65 19 chr12 65489419 65489527 -78296928 - LTR37B LTR ERV1 -355 113 1 392 160 30 60 chr12 65489527 65489627 -78296828 - L1MC5 LINE L1 -134 7827 7731 1665 149 115 0 chr12 65489793 65490062 -78296393 + AluJo SINE Alu 1 300 -12 1592 208 3 10 chr12 65490886 65491179 -78295276 - AluJb SINE Alu -21 291 1 420 290 148 0 chr12 65491364 65491526 -78294929 + MIR SINE MIR 72 257 -5 22 35 0 0 chr12 65491843 65491872 -78294583 + AT_rich Low_complexity Low_complexity 1 29 0 827 138 0 24 chr12 65493144 65493267 -78293188 - FLAM_C SINE Alu -18 125 6 21 0 0 0 chr12 65494406 65494427 -78292028 + AT_rich Low_complexity Low_complexity 1 21 0 2163 109 10 10 chr12 65495598 65495901 -78290554 + AluSx SINE Alu 1 303 -9 209 306 56 0 chr12 65498979 65499051 -78287404 + L2 LINE L2 3148 3223 -49 214 313 16 0 chr12 65499324 65499388 -78287067 + MIR SINE MIR 82 146 -116 1832 84 108 0 chr12 65500093 65500342 -78286113 + AluSx SINE Alu 6 281 -31 332 280 142 52 chr12 65500356 65500645 -78285810 + L1MC4a LINE L1 5888 6202 -1606 1605 175 43 7 chr12 65500653 65500933 -78285522 + AluJo SINE Alu 5 294 -18 2520 63 0 0 chr12 65501182 65501484 -78284971 - AluY SINE Alu -9 302 1 533 169 0 0 chr12 65502116 65502193 -78284262 - FLAM_A SINE Alu -55 77 1 264 325 9 35 chr12 65502193 65502307 -78284148 + MIR3 SINE MIR 44 154 -54 662 227 40 131 chr12 65502707 65502960 -78283495 - MLT1E LTR MaLR -222 345 115 2167 90 38 0 chr12 65502960 65503249 -78283206 + AluSp SINE Alu 1 300 -13 662 227 40 131 chr12 65503249 65503355 -78283100 - MLT1E LTR MaLR -452 115 1 275 192 27 55 chr12 65503510 65503583 -78282872 - L2 LINE L2 0 3313 3243 2297 120 37 35 chr12 65503797 65504171 -78282284 + THE1C LTR MaLR 1 375 0 231 194 108 21 chr12 65504228 65504321 -78282134 - L1ME4a LINE L1 -26 6095 5995 712 210 0 29 chr12 65504532 65504670 -78281785 - AluJo SINE Alu -176 136 3 2251 102 3 19 chr12 65504703 65505016 -78281439 - AluSx SINE Alu -4 308 1 715 73 0 18 chr12 65505821 65505930 -78280525 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2064 116 0 44 chr12 65509801 65510121 -78276334 + AluSx SINE Alu 3 308 -4 1102 201 50 40 chr12 65510308 65510621 -78275834 + MLT1B LTR MaLR 1 371 -19 654 176 88 24 chr12 65510857 65511027 -78275428 - MER53 DNA DNA -1 188 8 668 215 6 49 chr12 65511076 65511099 -78275356 - MER5B DNA MER1_type -22 156 134 2326 75 7 3 chr12 65511099 65511392 -78275063 - AluSp SINE Alu -19 294 1 668 215 6 49 chr12 65511392 65511531 -78274924 - MER5B DNA MER1_type -44 134 1 1252 183 13 109 chr12 65512600 65512805 -78273650 + L1M4c LINE L1 14 160 -6382 1384 175 67 26 chr12 65512805 65513073 -78273382 - AluJo SINE Alu -30 282 4 1252 183 13 109 chr12 65513073 65513215 -78273240 + L1M4c LINE L1 160 314 -6228 1717 138 37 40 chr12 65513242 65513416 -78273039 - AluJo SINE Alu -5 307 133 1923 149 7 3 chr12 65513416 65513705 -78272750 - AluJb SINE Alu -16 296 7 1717 138 37 40 chr12 65513705 65513826 -78272629 - AluJo SINE Alu -179 133 13 769 229 70 55 chr12 65513826 65514226 -78272229 + L1M4c LINE L1 1967 2511 -4314 2778 235 36 10 chr12 65514852 65515655 -78270800 + L1M4c LINE L1 2529 3312 -3332 182 246 140 0 chr12 65515655 65515712 -78270743 + MIR SINE MIR 124 188 -74 2623 36 0 0 chr12 65516150 65516457 -78269998 - AluY SINE Alu -4 307 1 686 198 0 0 chr12 65516539 65516660 -78269795 + MER58B DNA MER1_type 218 338 -3 390 213 65 19 chr12 65516673 65516781 -78269674 - LTR37B LTR ERV1 -355 113 1 392 160 30 60 chr12 65516781 65516881 -78269574 - L1MC5 LINE L1 -134 7827 7731 1665 149 115 0 chr12 65517047 65517316 -78269139 + AluJo SINE Alu 1 300 -12 1626 205 3 10 chr12 65518144 65518437 -78268018 - AluJb SINE Alu -21 291 1 836 228 99 80 chr12 65518908 65519373 -78267082 - MLT1H LTR MaLR -66 522 1 1883 143 39 26 chr12 65519665 65519973 -78266482 - AluJo SINE Alu 0 312 1 26 0 0 0 chr12 65520534 65520560 -78265895 + AT_rich Low_complexity Low_complexity 1 26 0 802 207 219 49 chr12 65525310 65525721 -78260734 - MER113 DNA MER1_type? -5 516 36 33 0 0 0 chr12 65525729 65525762 -78260693 + AT_rich Low_complexity Low_complexity 1 33 0 1601 142 64 50 chr12 65527087 65527447 -78259008 - THE1C LTR MaLR -10 365 1 530 202 0 0 chr12 65527703 65527807 -78258648 + U13 snRNA snRNA 1 104 0 991 176 6 18 chr12 65528759 65528924 -78257531 - AluJo SINE Alu -30 282 120 251 312 58 6 chr12 65529362 65529673 -78256782 - L1MEc LINE L1 -866 1710 1510 271 275 106 7 chr12 65529782 65529924 -78256531 - L1MEc LINE L1 -4918 1287 1132 3195 139 108 24 chr12 65530323 65530488 -78255967 + MER50 LTR ERV1 1 151 -583 1630 138 92 11 chr12 65530488 65530770 -78255685 + AluJb SINE Alu 1 305 -7 3195 139 108 24 chr12 65530770 65531260 -78255195 + MER50 LTR ERV1 151 711 -23 479 294 81 30 chr12 65532697 65532932 -78253523 + MIR SINE MIR 12 258 -4 180 0 0 0 chr12 65534585 65534605 -78251850 + (A)n Simple_repeat Simple_repeat 1 20 0 501 112 143 61 chr12 65534613 65534711 -78251744 + AluJb SINE Alu 1 106 -206 261 0 0 0 chr12 65534711 65534740 -78251715 + (T)n Simple_repeat Simple_repeat 1 29 0 210 71 0 0 chr12 65535797 65535825 -78250630 + (A)n Simple_repeat Simple_repeat 1 28 0 2774 142 0 6 chr12 65536845 65537331 -78249124 + L1 LINE L1 4621 5103 -1043 228 280 110 34 chr12 65537760 65537878 -78248577 + L2 LINE L2 3146 3272 0 2074 121 14 3 chr12 65537926 65538223 -78248232 - AluSx SINE Alu -12 300 1 629 240 16 0 chr12 65538245 65538374 -78248081 - FLAM_A SINE Alu 0 133 3 468 289 64 0 chr12 65539084 65539240 -78247215 - MIR SINE MIR -95 167 2 308 271 37 0 chr12 65539483 65539590 -78246865 - L1ME3A LINE L1 -239 5931 5821 210 253 46 69 chr12 65539724 65539811 -78246644 + MER5A DNA MER1_type 2 86 -103 * 531 212 106 0 chr12 65539742 65539855 -78246600 - MER5A DNA MER1_type -4 185 61 33 0 0 0 chr12 65539856 65539889 -78246566 + AT_rich Low_complexity Low_complexity 1 33 0 766 167 0 0 chr12 65539895 65540009 -78246446 - FLAM_C SINE Alu -24 119 6 383 171 0 40 chr12 65540013 65540089 -78246366 - MER5A DNA MER1_type -114 75 3 259 203 0 0 chr12 65540132 65540191 -78246264 - L1M4 LINE L1 -1527 4619 4561 2454 61 3 3 chr12 65540238 65540535 -78245920 + AluSp SINE Alu 2 298 -15 274 216 108 10 chr12 65540840 65540942 -78245513 - L1MEc LINE L1 -3178 3037 2926 300 298 34 29 chr12 65541252 65541460 -78244995 - L1MEc LINE L1 -4637 1759 1551 2152 133 0 3 chr12 65541576 65541877 -78244578 - AluSx SINE Alu -12 300 1 297 239 130 38 chr12 65541966 65542204 -78244251 - L1MEc LINE L1 -4956 1249 990 1639 162 45 17 chr12 65542267 65542557 -78243898 - AluJb SINE Alu -14 298 1 1135 158 0 16 chr12 65542605 65542789 -78243666 - AluSg/x SINE Alu -11 299 119 2172 122 0 0 chr12 65543250 65543544 -78242911 - AluSg SINE Alu -16 294 1 316 307 158 0 chr12 65544228 65544342 -78242113 - L2 LINE L2 -4 3268 3137 1948 135 3 20 chr12 65544906 65545209 -78241246 - AluSx SINE Alu -14 298 1 216 295 237 7 chr12 65545865 65546004 -78240451 - MER5A DNA MER1_type 0 189 19 218 324 39 39 chr12 65548300 65548402 -78238053 + L2 LINE L2 3122 3223 -49 218 313 16 0 chr12 65548675 65548739 -78237716 + MIR SINE MIR 82 146 -116 1876 87 103 0 chr12 65549444 65549697 -78236758 + AluSx SINE Alu 6 284 -28 354 280 142 52 chr12 65549708 65549997 -78236458 + L1MC4a LINE L1 5888 6202 -1606 1693 182 0 7 chr12 65550005 65550307 -78236148 + AluJo SINE Alu 5 304 -8 740 175 0 0 chr12 65550647 65550761 -78235694 - FLAM_C SINE Alu -24 119 6 202 228 13 76 chr12 65551228 65551307 -78235148 - MER5C DNA MER1_type -250 74 1 1755 135 12 73 chr12 65552630 65552957 -78233498 - AluJo SINE Alu -5 307 1 27 0 0 0 chr12 65553590 65553617 -78232838 + AT_rich Low_complexity Low_complexity 1 27 0 483 235 59 12 chr12 65553936 65554106 -78232349 + L1ME LINE L1 5508 5685 -436 741 257 12 29 chr12 65554560 65554801 -78231654 - MER46C DNA MER2_type -1 337 101 378 211 29 0 chr12 65555150 65555254 -78231201 + L1M4 LINE L1 3943 4049 -2097 396 0 0 0 chr12 65555282 65555326 -78231129 + (TG)n Simple_repeat Simple_repeat 1 44 0 693 298 43 14 chr12 65555504 65555665 -78230790 - HAL1 LINE L1 -585 1922 1748 2284 121 0 0 chr12 65555665 65555972 -78230483 - AluY SINE Alu -4 307 1 693 298 43 14 chr12 65555972 65556092 -78230363 - HAL1 LINE L1 -759 1748 1633 706 205 127 6 chr12 65556100 65556266 -78230189 + MER5A DNA MER1_type 4 189 0 767 275 105 18 chr12 65556266 65556405 -78230050 - HAL1 LINE L1 -879 1628 1503 2099 134 0 37 chr12 65556405 65556726 -78229729 - AluSx SINE Alu -3 309 1 767 275 105 18 chr12 65556726 65556975 -78229480 - HAL1 LINE L1 -1004 1503 1206 1964 158 3 3 chr12 65557031 65557342 -78229113 - AluJb SINE Alu -1 311 1 492 274 40 22 chr12 65557388 65557611 -78228844 - HAL1 LINE L1 -1511 996 770 2260 111 11 0 chr12 65557670 65558021 -78228434 - HSMAR2 DNA Mariner -47 1255 901 1827 126 30 0 chr12 65558542 65558805 -78227650 - AluSx SINE Alu -7 305 35 1281 185 16 82 chr12 65558833 65559136 -78227319 - AluJo SINE Alu -29 283 1 347 295 160 6 chr12 65559277 65559433 -78227022 + MIR SINE MIR 77 256 -6 233 242 45 0 chr12 65559491 65559557 -78226898 - MIR SINE MIR -96 166 98 2252 98 0 10 chr12 65560646 65560951 -78225504 - AluY SINE Alu -9 302 1 1778 189 0 31 chr12 65561117 65561439 -78225016 - AluJo SINE Alu 0 312 1 326 317 106 0 chr12 65562648 65562809 -78223646 - MIR SINE MIR -37 225 48 456 264 8 48 chr12 65562976 65563101 -78223354 - L2 LINE L2 -5 3308 3189 30 0 0 0 chr12 65563370 65563400 -78223055 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 65563512 65563534 -78222921 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr12 65563796 65563838 -78222617 + AT_rich Low_complexity Low_complexity 1 42 0 2327 164 24 55 chr12 65563896 65564444 -78222011 - L1MB7 LINE L1 -3 6181 5651 361 336 47 39 chr12 65565196 65565248 -78221207 - MIR3 SINE MIR -54 208 158 1852 151 0 7 chr12 65565248 65565526 -78220929 - AluJo SINE Alu -12 300 25 361 336 47 39 chr12 65565526 65565680 -78220775 - MIR3 SINE MIR -104 158 7 1351 158 0 9 chr12 65565799 65566021 -78220434 + AluJb SINE Alu 87 306 -6 953 245 46 12 chr12 65566176 65566417 -78220038 - MIR SINE MIR -6 256 8 28 29 0 0 chr12 65566775 65566810 -78219645 + AT_rich Low_complexity Low_complexity 1 35 0 660 179 24 8 chr12 65566822 65566945 -78219510 - FLAM_C SINE Alu -7 126 2 1837 163 7 20 chr12 65567643 65567938 -78218517 + AluJb SINE Alu 1 291 -21 682 222 67 21 chr12 65568056 65568250 -78218205 + MER3 DNA MER1_type 6 208 -1 2270 111 7 0 chr12 65569363 65569669 -78216786 + AluSc SINE Alu 1 308 -1 889 139 14 0 chr12 65569776 65569920 -78216535 + Tigger3(Golem) DNA MER2_type 2883 3028 -1 337 337 11 70 chr12 65570593 65570780 -78215675 + MLT1K LTR MaLR 84 259 -329 398 270 28 62 chr12 65570933 65571111 -78215344 + MLT1K LTR MaLR 417 588 0 1785 166 24 0 chr12 65571439 65571729 -78214726 + AluSx SINE Alu 1 297 -15 1739 199 0 0 chr12 65571753 65572050 -78214405 + AluJo SINE Alu 1 297 -15 400 264 80 68 chr12 65572350 65572600 -78213855 - MIR SINE MIR -9 253 1 282 317 142 43 chr12 65572742 65573067 -78213388 - L2 LINE L2 -1255 2059 1703 1719 19 19 0 chr12 65573497 65573707 -78212748 - L1PA4 LINE L1 -2 6153 5940 21 0 0 0 chr12 65574452 65574473 -78211982 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 65574548 65574571 -78211884 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr12 65575721 65575766 -78210689 + AT_rich Low_complexity Low_complexity 1 45 0 473 278 133 0 chr12 65577058 65577209 -78209246 - MIR SINE MIR 0 262 92 32 0 0 0 chr12 65577898 65577930 -78208525 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 65578843 65578878 -78207577 + AT_rich Low_complexity Low_complexity 1 35 0 721 62 0 0 chr12 65580185 65580282 -78206173 + L1PB3 LINE L1 6058 6154 0 1432 183 53 43 chr12 65580601 65580901 -78205554 - AluJo SINE Alu -9 303 1 762 132 116 0 chr12 65580901 65581022 -78205433 - AluJb SINE Alu -177 135 1 2179 97 3 29 chr12 65581399 65581707 -78204748 + AluSq SINE Alu 1 300 -13 286 143 14 29 chr12 65581707 65581777 -78204678 - L1ME2 LINE L1 -10 6154 6086 2466 83 3 13 chr12 65582119 65582433 -78204022 + AluSp SINE Alu 1 311 -2 315 0 0 0 chr12 65582433 65582468 -78203987 + (TA)n Simple_repeat Simple_repeat 1 35 0 319 138 17 0 chr12 65582528 65582586 -78203869 + L1ME2 LINE L1 6087 6145 -19 919 191 53 19 chr12 65582901 65583110 -78203345 - MER20 DNA MER1_type -3 216 1 303 320 78 105 chr12 65583121 65583296 -78203159 + L2 LINE L2 2618 2796 -476 1590 172 10 52 chr12 65583296 65583604 -78202851 - AluJb SINE Alu -17 295 1 303 320 78 105 chr12 65583604 65584065 -78202390 + L2 LINE L2 2796 3234 -38 237 111 74 0 chr12 65584139 65584193 -78202262 + L1ME4a LINE L1 6063 6120 -1 2261 116 3 0 chr12 65584567 65584869 -78201586 - AluSx SINE Alu -9 303 1 21 0 0 31 chr12 65584898 65584913 -78201542 + AT_rich Low_complexity Low_complexity 1 15 -16 1824 170 0 27 chr12 65584913 65585213 -78201242 + AluJb SINE Alu 1 292 -20 21 0 0 31 chr12 65585213 65585229 -78201226 + AT_rich Low_complexity Low_complexity 15 31 0 2433 64 0 7 chr12 65585301 65585596 -78200859 + AluY SINE Alu 1 293 -18 21 0 0 0 chr12 65585596 65585617 -78200838 + AT_rich Low_complexity Low_complexity 1 21 0 26 82 0 0 chr12 65586391 65586452 -78200003 + AT_rich Low_complexity Low_complexity 1 61 0 1657 173 0 55 chr12 65587515 65587651 -78198804 + AluJb SINE Alu 1 143 -169 2285 109 0 0 chr12 65587651 65587953 -78198502 + AluSg SINE Alu 1 302 -8 1657 173 0 55 chr12 65587953 65588146 -78198309 + AluJb SINE Alu 143 312 0 230 333 78 29 chr12 65588417 65588519 -78197936 - MIR SINE MIR -82 126 20 530 282 87 28 chr12 65588789 65589026 -78197429 - MIR SINE MIR -1 261 6 * 1354 274 67 57 chr12 65589010 65589852 -78196603 + L2 LINE L2 2461 3313 0 2453 76 0 10 chr12 65589943 65590257 -78196198 - AluY SINE Alu 0 311 1 319 235 41 51 chr12 65590428 65590526 -78195929 - L2 LINE L2 -37 3276 3180 724 293 106 72 chr12 65590820 65591314 -78195141 - L2 LINE L2 -823 2491 1968 1900 155 0 31 chr12 65591314 65591631 -78194824 + AluJo SINE Alu 6 312 0 724 293 106 72 chr12 65591631 65591798 -78194657 - L2 LINE L2 -1346 1968 1808 315 218 34 130 chr12 65591920 65592155 -78194300 + HAL1b LINE L1 1196 1345 -3 2091 93 36 11 chr12 65592165 65592443 -78194012 + AluSq SINE Alu 12 296 -17 306 300 56 11 chr12 65592461 65592551 -78193904 + MIR3 SINE MIR 85 178 -30 1718 187 3 13 chr12 65593008 65593323 -78193132 - AluJo SINE Alu 0 312 1 1731 185 0 7 chr12 65593491 65593778 -78192677 - AluJb SINE Alu -27 285 1 2339 116 0 0 chr12 65594812 65595122 -78191333 - AluSx SINE Alu -2 310 1 1405 243 3 0 chr12 65595139 65595493 -78190962 + L1 LINE L1 2522 2876 -3270 8215 199 41 13 chr12 65595495 65597524 -78188931 + L1 LINE L1 3110 5195 -951 2156 92 104 18 chr12 65597524 65597859 -78188596 - THE1B LTR MaLR 0 364 1 7718 88 18 12 chr12 65597859 65598928 -78187527 - THE1B-int LTR MaLR 0 1580 502 2072 115 0 26 chr12 65598928 65599233 -78187222 - AluSx SINE Alu -15 297 1 7718 88 18 12 chr12 65599233 65599281 -78187174 - THE1B-int LTR MaLR -1078 502 456 1237 157 0 0 chr12 65599535 65599733 -78186722 + AluSg/x SINE Alu 113 310 0 2162 125 7 0 chr12 65600234 65600538 -78185917 + AluSp SINE Alu 1 306 -7 2481 80 3 0 chr12 65600540 65600852 -78185603 + AluSq SINE Alu 1 313 0 1878 167 3 3 chr12 65601087 65601398 -78185057 + AluJb SINE Alu 1 311 -1 377 246 77 23 chr12 65601576 65601706 -78184749 + MIR SINE MIR 6 142 -120 251 333 64 50 chr12 65602920 65603217 -78183238 + L2 LINE L2 1333 1633 -1681 590 326 93 38 chr12 65603272 65603475 -78182980 + L2 LINE L2 2137 2327 -987 2098 93 18 4 chr12 65603475 65603755 -78182700 + AluSx SINE Alu 2 285 -27 590 326 93 38 chr12 65603755 65604156 -78182299 + L2 LINE L2 2327 2774 -540 1474 179 15 11 chr12 65604769 65605075 -78181380 + AluJb SINE Alu 19 325 0 701 149 25 0 chr12 65605593 65605714 -78180741 - AluJb SINE Alu -11 301 178 1378 154 84 50 chr12 65605715 65606013 -78180442 + AluJo SINE Alu 1 308 -4 1163 62 7 0 chr12 65606622 65606767 -78179688 + AluSp SINE Alu 1 146 -167 203 192 0 96 chr12 65606972 65607024 -78179431 - MIR SINE MIR -113 149 103 386 219 0 29 chr12 65608624 65608729 -78177726 + L2 LINE L2 2727 2828 -486 484 183 12 0 chr12 65608798 65608880 -78177575 + L2 LINE L2 3227 3309 -4 22 0 0 0 chr12 65609218 65609240 -78177215 + AT_rich Low_complexity Low_complexity 1 22 0 1893 106 4 15 chr12 65609497 65609771 -78176684 - AluSx SINE Alu -30 282 12 882 136 0 0 chr12 65609805 65609930 -78176525 - AluSq/x SINE Alu -188 125 1 2051 141 0 0 chr12 65610168 65610472 -78175983 + AluSx SINE Alu 3 306 -6 313 321 18 28 chr12 65610903 65611012 -78175443 + MIR SINE MIR 1 108 -154 4536 65 23 3 chr12 65611012 65612023 -78174432 - MER11A LTR ERVK 0 1266 1 366 262 92 28 chr12 65612038 65612179 -78174276 + MIR SINE MIR 103 252 -10 3786 114 127 80 chr12 65613158 65614560 -78171895 + pTR5 LTR ERV1 377 714 0 636 324 105 3 chr12 65614590 65614896 -78171559 + L2 LINE L2 2254 2590 -724 1682 128 50 10 chr12 65614922 65615219 -78171236 + MER51B LTR ERV1 67 375 -2 475 173 0 0 chr12 65615221 65615302 -78171153 + AluJ/FRAM SINE Alu 223 303 -9 334 109 0 0 chr12 65615369 65615424 -78171031 - AluSp/q SINE Alu -8 295 241 848 122 14 7 chr12 65615542 65615689 -78170766 + AluY SINE Alu 164 311 0 2433 88 14 0 chr12 65615693 65616055 -78170400 - THE1B-int LTR MaLR -1213 367 1 2040 131 76 20 chr12 65616055 65616399 -78170056 - THE1B LTR MaLR 0 364 2 4037 169 51 23 chr12 65616399 65617245 -78169210 + L1MB2 LINE L1 5190 6066 -105 2066 129 10 10 chr12 65617245 65617540 -78168915 + AluSx SINE Alu 3 297 -15 4037 169 51 23 chr12 65617540 65617645 -78168810 + L1MB2 LINE L1 6066 6167 -4 3908 110 14 17 chr12 65617654 65618132 -78168323 + L1MA3 LINE L1 5670 6148 -157 2123 106 3 0 chr12 65618132 65618440 -78168015 + AluSp SINE Alu 1 309 0 3908 110 14 17 chr12 65618440 65618598 -78167857 + L1MA3 LINE L1 6148 6305 0 1429 229 16 37 chr12 65619121 65619497 -78166958 + MLT1A2 LTR MaLR 1 368 -6 497 328 41 33 chr12 65619620 65619660 -78166795 - MIR SINE MIR -14 248 210 1496 194 68 29 chr12 65619660 65620011 -78166444 - MLT1A1 LTR MaLR 0 365 1 497 328 41 33 chr12 65620011 65620214 -78166241 - MIR SINE MIR -52 210 3 2944 178 208 18 chr12 65621134 65621520 -78164935 - Charlie1 DNA MER1_type -28 2733 2421 2228 96 3 0 chr12 65621520 65621823 -78164632 - AluY SINE Alu -7 304 1 2944 178 208 18 chr12 65621823 65622361 -78164094 - Charlie1 DNA MER1_type -340 2421 1634 1094 73 67 13 chr12 65622362 65622512 -78163943 + AluSq SINE Alu 1 158 -155 236 104 90 0 chr12 65622525 65622592 -78163863 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr12 65622700 65622721 -78163734 + AT_rich Low_complexity Low_complexity 1 21 0 2142 125 0 10 chr12 65622722 65623018 -78163437 - AluSq SINE Alu -20 293 1 557 186 16 31 chr12 65623030 65623159 -78163296 - Charlie1 DNA MER1_type -1180 1581 1455 504 185 56 9 chr12 65623154 65623262 -78163193 - Charlie1 DNA MER1_type -2642 119 7 * 2067 127 28 0 chr12 65623620 65623911 -78162544 + AluSx SINE Alu 1 299 -13 213 330 62 62 chr12 65628403 65628582 -78157873 + MIR SINE MIR 5 183 -79 21 36 0 0 chr12 65628631 65628659 -78157796 + AT_rich Low_complexity Low_complexity 1 28 0 2224 122 3 0 chr12 65628891 65629186 -78157269 + AluSx SINE Alu 1 296 -16 518 191 21 0 chr12 65629225 65629319 -78157136 + FLAM_A SINE Alu 36 131 -11 414 282 141 37 chr12 65629652 65629893 -78156562 - L2 LINE L2 -80 3233 2968 292 283 97 9 chr12 65629998 65630111 -78156344 + MIR3 SINE MIR 49 171 -37 2242 90 23 0 chr12 65630901 65631200 -78155255 - L1PA14 LINE L1 -4 6157 5852 277 233 35 12 chr12 65631368 65631454 -78155001 + MIR SINE MIR 163 250 -12 1628 164 19 13 chr12 65631594 65631904 -78154551 - L1MB7 LINE L1 -12 6172 5861 2731 199 78 11 chr12 65631916 65632274 -78154181 - L1MB7 LINE L1 -20 6271 5938 2541 63 0 3 chr12 65632274 65632577 -78153878 - AluY SINE Alu -9 302 1 2731 199 78 11 chr12 65632577 65633558 -78152897 - L1MB7 LINE L1 -353 5938 4840 2504 81 0 0 chr12 65633808 65634115 -78152340 - AluY SINE Alu -4 307 1 2052 223 167 26 chr12 65634737 65635415 -78151040 - L1MC4 LINE L1 0 8042 7270 2035 218 119 40 chr12 65635416 65636044 -78150411 - L1MC4 LINE L1 -921 7121 6444 889 180 0 0 chr12 65636156 65636284 -78150171 + FLAM_A SINE Alu 1 128 -5 2292 110 0 10 chr12 65636285 65636593 -78149862 + AluSg SINE Alu 1 305 -5 185 0 0 39 chr12 65636922 65636948 -78149507 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2253 153 18 0 chr12 65637460 65637801 -78148654 + MER7A DNA MER2_type 2 346 0 289 299 112 58 chr12 65637841 65638290 -78148165 - L2 LINE L2 -483 2831 2268 242 247 54 21 chr12 65638492 65638585 -78147870 + MIR SINE MIR 166 261 -1 204 340 0 0 chr12 65638789 65638839 -78147616 - L2 LINE L2 -37 3235 3186 1705 169 27 0 chr12 65639149 65639445 -78147010 + AluJb SINE Alu 1 304 -8 2988 126 6 47 chr12 65639935 65640059 -78146396 - Tigger1 DNA MER2_type -1307 1111 984 1731 150 31 14 chr12 65640059 65640345 -78146110 + AluJo SINE Alu 1 291 -21 2988 126 6 47 chr12 65640345 65640712 -78145743 - Tigger1 DNA MER2_type -1434 984 640 1249 102 0 0 chr12 65640718 65640884 -78145571 - AluSq SINE Alu 0 313 148 3971 146 25 19 chr12 65640889 65641533 -78144922 - Tigger1 DNA MER2_type -1770 648 1 1838 167 42 9 chr12 65641720 65642050 -78144405 - MER2 DNA MER2_type -3 341 1 260 168 10 79 chr12 65642291 65642392 -78144063 + L1MC5 LINE L1 7631 7724 -237 25 31 0 0 chr12 65642443 65642475 -78143980 + AT_rich Low_complexity Low_complexity 1 32 0 831 157 0 0 chr12 65643713 65643834 -78142621 + AluSq/x SINE Alu 1 121 -191 773 189 0 104 chr12 65644080 65644281 -78142174 - MER5A DNA MER1_type -7 182 3 1456 189 7 22 chr12 65644325 65644600 -78141855 - AluJb SINE Alu -31 281 11 1962 66 0 8 chr12 65644663 65644907 -78141548 - AluY SINE Alu -69 242 1 33 0 0 23 chr12 65644979 65644995 -78141460 + AT_rich Low_complexity Low_complexity 1 16 -27 1647 173 3 30 chr12 65644995 65645295 -78141160 - AluJb SINE Alu -20 292 1 33 0 0 23 chr12 65645295 65645322 -78141133 + AT_rich Low_complexity Low_complexity 16 43 0 283 303 115 24 chr12 65645370 65645657 -78140798 + L1ME4a LINE L1 5632 5944 -177 2975 256 29 31 chr12 65646380 65646971 -78139484 - L1ME1 LINE L1 -5 6161 5571 2077 146 0 3 chr12 65646971 65647279 -78139176 + AluSx SINE Alu 1 307 -5 2975 256 29 31 chr12 65647279 65647557 -78138898 - L1ME1 LINE L1 -595 5571 5294 1782 62 115 16 chr12 65647564 65647885 -78138570 - L1PA3 LINE L1 -1 6154 5802 706 232 40 7 chr12 65648910 65649061 -78137394 + MIR SINE MIR 6 161 -101 229 352 0 0 chr12 65649429 65649483 -78136972 - L2 LINE L2 -92 3180 3127 634 173 211 0 chr12 65650962 65651118 -78135337 + MER53 DNA DNA 1 189 0 23 33 0 0 chr12 65651672 65651702 -78134753 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 65652772 65652793 -78133662 + GC_rich Low_complexity Low_complexity 1 21 0 827 131 145 0 chr12 65655598 65655743 -78130712 + FRAM SINE Alu 1 161 -15 654 222 0 22 chr12 65655757 65655892 -78130563 + FLAM_A SINE Alu 6 137 -5 186 299 175 0 chr12 65656526 65656623 -78129832 - L2 LINE L2 -1276 2038 1925 2423 88 7 0 chr12 65657444 65657751 -78128704 - AluSq SINE Alu -4 309 1 480 236 98 6 chr12 65658039 65658213 -78128242 + L1MC5 LINE L1 7034 7223 -738 1214 238 100 33 chr12 65658410 65658982 -78127473 + L1MC5 LINE L1 7316 7925 -36 1306 142 28 45 chr12 65659528 65659775 -78126680 - L1MA7 LINE L1 -237 6054 5812 351 0 0 0 chr12 65659851 65659890 -78126565 + (TG)n Simple_repeat Simple_repeat 2 40 0 1908 129 11 4 chr12 65659892 65660171 -78126284 - AluJb SINE Alu -31 281 1 2221 98 0 3 chr12 65660435 65660721 -78125734 + AluSx SINE Alu 1 285 -27 852 144 0 0 chr12 65660812 65660930 -78125525 - FLAM_C SINE Alu -15 118 1 1881 164 0 4 chr12 65661685 65661965 -78124490 - AluJb SINE Alu -33 279 1 213 39 0 0 chr12 65662392 65662418 -78124037 + (TG)n Simple_repeat Simple_repeat 2 27 0 2038 119 0 24 chr12 65662429 65662724 -78123731 - AluSx SINE Alu -24 288 1 191 282 73 81 chr12 65662977 65663211 -78123244 - L2 LINE L2 -363 2951 2720 910 161 0 0 chr12 65663228 65663371 -78123084 - FLAM_C SINE Alu 0 143 1 701 146 71 188 chr12 65663604 65663844 -78122611 - MER58C DNA MER1_type 0 215 4 351 96 0 0 chr12 65663883 65663935 -78122520 + (TC)n Simple_repeat Simple_repeat 1 52 0 704 158 53 0 chr12 65664208 65664341 -78122114 - MER52A LTR ERV1 -906 849 710 7295 175 175 19 chr12 65664428 65665946 -78120509 + MER52A LTR ERV1 1 1755 0 332 333 83 0 chr12 65665951 65666071 -78120384 + MER5A DNA MER1_type 4 133 -56 1564 175 10 43 chr12 65666074 65666377 -78120078 - AluJb SINE Alu -17 295 3 2313 91 0 3 chr12 65666824 65667121 -78119334 - AluSc SINE Alu -13 296 1 472 325 110 8 chr12 65667611 65667848 -78118607 + MIR SINE MIR 1 261 -1 763 270 21 21 chr12 65667868 65668057 -78118398 + MIR SINE MIR 12 200 -62 209 283 108 42 chr12 65668048 65668168 -78118287 - L2 LINE L2 0 3313 3186 * 188 300 0 57 chr12 65668240 65668310 -78118145 + MIR SINE MIR 195 260 -2 360 0 0 0 chr12 65668649 65668689 -78117766 + (TG)n Simple_repeat Simple_repeat 2 41 0 387 0 0 0 chr12 65668896 65668939 -78117516 + (TG)n Simple_repeat Simple_repeat 2 44 0 892 234 27 61 chr12 65669539 65669800 -78116655 + MIR SINE MIR 11 262 0 3196 104 26 19 chr12 65669845 65670306 -78116149 + MER4C LTR ERV1 2 465 0 2125 92 0 4 chr12 65671321 65671593 -78114862 - AluSg SINE Alu -22 288 18 315 305 140 6 chr12 65671722 65671886 -78114569 + MLT1J2 LTR MaLR 1 186 -264 1367 212 73 43 chr12 65671895 65672334 -78114121 + MLT1C LTR MaLR 10 461 -6 287 294 0 12 chr12 65672463 65672548 -78113907 + MLT1J2 LTR MaLR 367 450 0 504 282 112 6 chr12 65675789 65675959 -78110496 + MIR3 SINE MIR 15 202 -6 230 200 0 0 chr12 65678235 65678285 -78108170 + LTR66 LTR ERVL 399 448 -162 232 49 73 0 chr12 65678303 65678344 -78108111 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 65678408 65678464 -78107991 + (TA)n Simple_repeat Simple_repeat 1 55 0 355 35 17 35 chr12 65679174 65679232 -78107223 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 557 286 98 10 chr12 65679278 65679481 -78106974 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 65679690 65679797 -78106658 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 8048 173 14 11 chr12 65680425 65681955 -78104500 - L1P LINE L1 -1252 4894 3360 2721 126 25 96 chr12 65681953 65682741 -78103714 + L1PA15 LINE L1 5217 5945 -220 * 2219 95 0 38 chr12 65683595 65683912 -78102543 - AluSq SINE Alu -7 306 2 390 360 18 6 chr12 65683975 65684139 -78102316 - LTR67 LTR ERVL -347 210 45 401 203 0 0 chr12 65684386 65684465 -78101990 - MER116 DNA Mariner -1 79 1 2840 280 26 23 chr12 65687506 65688687 -78097768 - L1M2 LINE L1 -4318 2033 863 1147 295 10 49 chr12 65688702 65689194 -78097261 - L1M2 LINE L1 -5771 510 38 24 0 0 0 chr12 65689478 65689502 -78096953 + AT_rich Low_complexity Low_complexity 1 24 0 206 241 0 0 chr12 65689942 65689996 -78096459 + (TA)n Simple_repeat Simple_repeat 2 55 0 537 285 65 19 chr12 65690071 65690331 -78096124 - L1MC4 LINE L1 -218 7824 7553 5012 33 0 0 chr12 65691284 65691834 -78094621 + L1PA3 LINE L1 5606 6155 0 250 332 120 3 chr12 65691896 65692049 -78094406 - MIR SINE MIR -58 204 38 403 236 37 56 chr12 65692215 65692376 -78094079 - MSTA LTR MaLR -11 417 260 207 0 0 0 chr12 65693397 65693420 -78093035 + (T)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr12 65693571 65693604 -78092851 + AT_rich Low_complexity Low_complexity 1 33 0 2136 116 3 0 chr12 65695401 65695685 -78090770 + AluSx SINE Alu 2 286 -26 206 220 0 20 chr12 65696091 65696141 -78090314 + L2 LINE L2 3224 3272 0 22 56 0 0 chr12 65697797 65697833 -78088622 + AT_rich Low_complexity Low_complexity 1 36 0 306 0 0 0 chr12 65699963 65699997 -78086458 + (TG)n Simple_repeat Simple_repeat 1 34 0 270 0 0 0 chr12 65699996 65700026 -78086429 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 3053 186 9 40 chr12 65700825 65701735 -78084720 - L1M3 LINE L1 -638 5545 4663 4714 155 31 5 chr12 65702033 65703003 -78083452 + L1MA1 LINE L1 5134 6128 -174 3659 32 0 12 chr12 65703169 65703601 -78082854 + L1PA3 LINE L1 5707 6133 -22 29 0 0 0 chr12 65704166 65704195 -78082260 + AT_rich Low_complexity Low_complexity 1 29 0 2522 70 3 0 chr12 65704587 65704888 -78081567 + AluSc SINE Alu 1 302 -7 4970 130 13 21 chr12 65705565 65706403 -78080052 + L1MA2 LINE L1 5466 6296 -8 449 323 67 17 chr12 65707075 65707348 -78079107 - L2 LINE L2 -189 3083 2790 275 291 51 51 chr12 65708772 65708889 -78077566 + L2 LINE L2 3155 3271 -1 2078 126 3 0 chr12 65710797 65711090 -78075365 - AluSx SINE Alu -18 294 1 2150 161 122 3 chr12 65711125 65711511 -78074944 + MSTB1 LTR MaLR 1 432 0 446 241 31 27 chr12 65711750 65711919 -78074536 - MLT1I LTR MaLR -243 166 37 186 327 191 18 chr12 65713195 65713305 -78073150 + L2 LINE L2 3139 3267 -5 214 364 23 0 chr12 65715206 65715294 -78071161 - MIR SINE MIR -62 146 57 419 199 177 22 chr12 65715735 65715916 -78070539 + L1ME4a LINE L1 5676 5884 -237 1618 176 35 17 chr12 65717421 65717711 -78068744 - AluJb SINE Alu -16 296 2 183 80 0 0 chr12 65717714 65717739 -78068716 + (A)n Simple_repeat Simple_repeat 1 25 0 2118 106 0 14 chr12 65718002 65718316 -78068139 - AluSx SINE Alu 0 313 4 649 258 88 6 chr12 65718731 65718890 -78067565 + FAM SINE Alu 3 174 -1 338 283 42 25 chr12 65720357 65720477 -78065978 + L1MC4 LINE L1 7904 8025 -17 2215 112 0 13 chr12 65720478 65720792 -78065663 - AluSx SINE Alu -2 310 1 211 217 43 0 chr12 65721260 65721306 -78065149 - MIR3 SINE MIR -52 156 109 1840 147 0 20 chr12 65721850 65722150 -78064305 + AluSx SINE Alu 1 294 -18 1882 155 10 0 chr12 65722391 65722681 -78063774 + AluSx SINE Alu 5 297 -15 343 271 204 83 chr12 65723666 65723763 -78062692 + L1ME4a LINE L1 5256 5340 -2468 2170 118 3 0 chr12 65723763 65724068 -78062387 + AluSx SINE Alu 1 306 -6 343 271 204 83 chr12 65724068 65724368 -78062087 + L1ME4a LINE L1 5340 5701 -2107 232 255 155 47 chr12 65724383 65724468 -78061987 + L1ME4a LINE L1 5738 5812 -309 2400 98 0 6 chr12 65724468 65724783 -78061672 + AluSq SINE Alu 1 313 0 232 255 155 47 chr12 65724783 65725019 -78061436 + L1ME4a LINE L1 5812 6094 -27 223 269 34 67 chr12 65725092 65725211 -78061244 + MIR SINE MIR 48 162 -100 1437 207 175 12 chr12 65725653 65726054 -78060401 + MER31B LTR ERV1 1 466 0 624 235 132 8 chr12 65728711 65728894 -78057561 + MIR SINE MIR 23 211 -51 22 0 0 0 chr12 65729173 65729195 -78057260 + AT_rich Low_complexity Low_complexity 1 22 0 2615 52 0 0 chr12 65729720 65730026 -78056429 - AluSp SINE Alu -7 306 1 854 61 0 0 chr12 65732791 65732890 -78053565 + HY3 scRNA scRNA 1 99 -2 2244 92 10 7 chr12 65734027 65734330 -78052125 - AluSq SINE Alu -9 304 1 2615 46 0 0 chr12 65735196 65735498 -78050957 + AluY SINE Alu 1 302 -9 2128 99 10 19 chr12 65735532 65735845 -78050610 + AluSx SINE Alu 1 310 -2 362 283 25 8 chr12 65735846 65735966 -78050489 - L1MC4 LINE L1 -17 8025 7904 649 258 88 6 chr12 65737432 65737591 -78048864 - FAM SINE Alu -1 174 3 2119 106 0 14 chr12 65738006 65738320 -78048135 + AluSx SINE Alu 4 313 0 183 80 0 0 chr12 65738583 65738608 -78047847 + (T)n Simple_repeat Simple_repeat 1 25 0 1616 186 17 0 chr12 65738611 65738901 -78047554 + AluJb SINE Alu 2 296 -16 328 233 183 22 chr12 65740406 65740586 -78045869 - L1ME4a LINE L1 -237 5884 5676 214 364 23 0 chr12 65741027 65741115 -78045340 + MIR SINE MIR 57 146 -62 186 327 191 18 chr12 65743017 65743127 -78043328 - L2 LINE L2 -5 3267 3139 441 239 31 27 chr12 65744403 65744572 -78041883 + MLT1I LTR MaLR 37 166 -243 2073 168 122 3 chr12 65744811 65745197 -78041258 - MSTB1 LTR MaLR 0 432 1 2005 127 10 0 chr12 65745232 65745523 -78040932 + AluSx SINE Alu 1 294 -18 272 310 178 0 chr12 65746763 65746892 -78039563 + MLT1I LTR MaLR 201 352 -57 277 299 51 51 chr12 65747431 65747548 -78038907 - L2 LINE L2 -1 3271 3155 397 332 76 26 chr12 65748971 65749210 -78037245 + L2 LINE L2 2790 3040 -232 1734 142 69 10 chr12 65749576 65749864 -78036591 + AluSx SINE Alu 1 305 -7 2225 114 3 16 chr12 65750403 65750718 -78035737 + AluSx SINE Alu 2 312 0 205 304 11 33 chr12 65751115 65751207 -78035248 + CT-rich Low_complexity Low_complexity 1 90 0 251 189 45 108 chr12 65751946 65752057 -78034398 - MLT1K LTR MaLR -150 438 335 255 383 67 15 chr12 65753761 65754030 -78032425 + L2 LINE L2 2464 2746 -568 23 0 0 0 chr12 65754082 65754105 -78032350 + AT_rich Low_complexity Low_complexity 1 23 0 261 290 53 84 chr12 65754739 65754870 -78031585 + L2 LINE L2 3182 3308 -5 434 287 112 40 chr12 65755482 65755623 -78030832 + MIR SINE MIR 7 158 -95 2620 120 28 11 chr12 65755623 65755981 -78030474 - THE1B LTR MaLR 0 364 1 434 287 112 40 chr12 65755981 65756018 -78030437 + MIR SINE MIR 158 191 -62 271 307 95 27 chr12 65756437 65756547 -78029908 - MIR SINE MIR -100 108 7 1539 168 42 18 chr12 65757333 65757619 -78028836 - AluJb SINE Alu -9 303 11 250 267 0 0 chr12 65758114 65758174 -78028281 + (CTG)n Simple_repeat Simple_repeat 2 61 0 240 59 0 0 chr12 65758473 65758507 -78027948 + (A)n Simple_repeat Simple_repeat 1 34 0 303 233 98 123 chr12 65758509 65758835 -78027620 - MLT1I LTR MaLR -35 374 57 209 295 66 0 chr12 65759772 65759833 -78026622 + MIR SINE MIR 42 106 -102 349 301 133 29 chr12 65760301 65760474 -78025981 - MIR SINE MIR -23 239 49 215 289 19 0 chr12 65760485 65760537 -78025918 + MIR3 SINE MIR 125 177 -31 1567 199 4 7 chr12 65760563 65760835 -78025620 + MER77 LTR ERV1 1 271 -334 532 354 35 18 chr12 65761240 65761469 -78024986 + ERVL LTR ERVL 413 645 -5119 211 305 17 0 chr12 65761975 65762034 -78024421 + L2 LINE L2 3201 3260 -12 2270 95 7 0 chr12 65762673 65762969 -78023486 + AluSq SINE Alu 1 298 -15 244 246 173 36 chr12 65763225 65763335 -78023120 + L2 LINE L2 3185 3309 -4 593 335 76 30 chr12 65763483 65763958 -78022497 + L2 LINE L2 2271 2767 -547 311 331 54 31 chr12 65764445 65764575 -78021880 + MER91C DNA MER1_type 1 133 -7 311 314 75 31 chr12 65765019 65765178 -78021277 - LTR33 LTR ERVL -352 169 4 522 257 92 0 chr12 65765700 65765852 -78020603 - ERVL LTR ERVL -1834 3930 3765 1357 198 37 89 chr12 65765969 65766406 -78020049 - MLT2B1 LTR ERVL 0 444 1 2011 137 0 53 chr12 65766513 65766834 -78019621 - AluSx SINE Alu -8 304 1 3459 340 61 18 chr12 65766835 65768765 -78017690 - ERVL LTR ERVL -2190 3464 1453 305 352 0 0 chr12 65768888 65769016 -78017439 - ERVL LTR ERVL -4469 1016 889 183 129 0 0 chr12 65769306 65769337 -78017118 + (TTCCC)n Simple_repeat Simple_repeat 4 34 0 800 307 86 37 chr12 65769797 65770253 -78016202 - LTR33 LTR ERVL 0 521 44 2612 76 0 6 chr12 65770534 65770878 -78015577 - L1PA13 LINE L1 -548 5615 5274 3808 98 40 6 chr12 65770878 65771400 -78015055 + L1PA13 LINE L1 5609 6155 -8 2293 107 3 0 chr12 65771554 65771853 -78014602 - AluSx SINE Alu -12 300 1 307 329 211 27 chr12 65771924 65772146 -78014309 + L2 LINE L2 2866 3046 -226 342 141 0 130 chr12 65772146 65772238 -78014217 + MADE1 DNA Mariner 1 80 0 307 329 211 27 chr12 65772238 65772352 -78014103 + L2 LINE L2 3046 3264 -8 609 307 172 16 chr12 65773011 65773552 -78012903 + L2 LINE L2 2684 3313 0 1997 227 54 25 chr12 65774355 65774840 -78011615 - MLT1F1 LTR MaLR 0 567 69 21 57 0 0 chr12 65775173 65775208 -78011247 + AT_rich Low_complexity Low_complexity 1 35 0 188 377 27 14 chr12 65775495 65775641 -78010814 + L3b LINE CR1 1326 1473 -110 486 0 0 0 chr12 65777118 65777172 -78009283 + (CA)n Simple_repeat Simple_repeat 2 55 0 307 195 176 38 chr12 65777349 65777559 -78008896 - Charlie7 DNA MER1_type -52 2560 2322 243 211 47 81 chr12 65777559 65777834 -78008621 - Charlie7 DNA MER1_type -89 2523 2186 985 249 88 41 chr12 65777852 65778217 -78008238 - Charlie7 DNA MER1_type -2000 612 231 767 227 108 133 chr12 65778829 65779402 -78007053 - MLT1G LTR MaLR 0 590 32 364 361 40 0 chr12 65779431 65779633 -78006822 - L1MC4a LINE L1 -1890 5918 5709 314 285 110 35 chr12 65779635 65780007 -78006448 - L1MC4a LINE L1 -2117 5691 5292 592 307 56 6 chr12 65780265 65780444 -78006011 + MER5A DNA MER1_type 1 188 -1 212 222 22 0 chr12 65780553 65780596 -78005859 - L3 LINE CR1 -8 1569 1526 288 253 273 0 chr12 65780596 65780695 -78005760 + MER5B DNA MER1_type 1 126 -52 274 241 120 68 chr12 65780744 65780877 -78005578 - MIR3 SINE MIR -50 158 19 2334 91 3 19 chr12 65781257 65781293 -78005162 - AluSp SINE Alu 0 313 278 194 0 39 0 chr12 65781293 65781319 -78005136 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2334 91 3 19 chr12 65781319 65781600 -78004855 - AluSp SINE Alu -35 278 1 192 331 62 62 chr12 65781697 65781857 -78004598 + MIR SINE MIR 23 182 -80 1869 152 45 20 chr12 65782197 65782553 -78003902 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr12 65782910 65782946 -78003509 + AT_rich Low_complexity Low_complexity 1 36 0 336 292 38 10 chr12 65782965 65783174 -78003281 - L1ME4a LINE L1 -121 6000 5786 376 208 0 0 chr12 65783304 65783381 -78003074 + MER116 DNA Mariner 2 78 -2 356 221 122 30 chr12 65783387 65783518 -78002937 - MIR SINE MIR -114 148 6 434 294 124 10 chr12 65783947 65784141 -78002314 - MIR SINE MIR -12 250 35 2284 71 3 7 chr12 65785707 65786012 -78000443 - AluSg SINE Alu 0 304 1 188 261 196 11 chr12 65786590 65786682 -77999773 + MIR SINE MIR 141 249 -13 472 211 157 34 chr12 65787000 65787204 -77999251 - MER106A DNA MER1_type -7 229 1 471 324 37 0 chr12 65788462 65788734 -77997721 + L1MB2 LINE L1 5512 5793 -328 1536 168 3 23 chr12 65788778 65789081 -77997374 + L1MB2 LINE L1 5873 6169 -2 21 0 0 0 chr12 65790445 65790466 -77995989 + AT_rich Low_complexity Low_complexity 1 21 0 228 159 68 0 chr12 65790988 65791032 -77995423 - MIR SINE MIR -98 164 118 1011 75 0 0 chr12 65791822 65791956 -77994499 - THE1B LTR MaLR 0 364 231 605 189 8 0 chr12 65792056 65792183 -77994272 - L1MC3 LINE L1 -1591 6194 6067 6288 228 34 17 chr12 65792220 65793330 -77993125 + L1PB4 LINE L1 2654 3808 -2338 2182 87 4 0 chr12 65793330 65793606 -77992849 + AluSp SINE Alu 37 313 0 6288 228 34 17 chr12 65793606 65794306 -77992149 + L1PB4 LINE L1 3808 4495 -1651 643 275 108 31 chr12 65794493 65794817 -77991638 + MLT1G LTR MaLR 28 376 -214 289 167 97 70 chr12 65794843 65794957 -77991498 + MLT1G LTR MaLR 395 511 -19 1824 99 52 151 chr12 65794970 65795374 -77991081 + THE1B LTR MaLR 1 364 0 11160 102 25 1 chr12 65795374 65796918 -77989537 + THE1B-int LTR MaLR 1 1580 0 2034 131 32 67 chr12 65796920 65797295 -77989160 + THE1B LTR MaLR 3 364 0 32 81 0 0 chr12 65797832 65797906 -77988549 + AT_rich Low_complexity Low_complexity 1 74 0 404 302 188 5 chr12 65799742 65799944 -77986511 + MIR SINE MIR 24 262 0 301 334 251 25 chr12 65800720 65800956 -77985499 + L3 LINE CR1 712 894 -683 1624 189 85 48 chr12 65800956 65801437 -77985018 + MLT1D LTR MaLR 3 501 -4 301 334 251 25 chr12 65801437 65801715 -77984740 + L3 LINE CR1 894 1342 -235 262 243 47 75 chr12 65801718 65801825 -77984630 + L2 LINE L2 3158 3261 -52 947 275 68 31 chr12 65801930 65802374 -77984081 - MLT1J LTR MaLR -45 466 7 26 50 0 0 chr12 65802652 65802692 -77983763 + AT_rich Low_complexity Low_complexity 1 40 0 1849 131 75 34 chr12 65802888 65803246 -77983209 - THE1C LTR MaLR 0 375 3 264 256 47 62 chr12 65803409 65803538 -77982917 + L2 LINE L2 2508 2634 -680 763 228 16 0 chr12 65803638 65803822 -77982633 + L1PB4 LINE L1 4777 4963 -1183 2998 145 45 24 chr12 65803828 65804367 -77982088 - MER21A LTR ERV1 -6 925 376 1097 142 73 34 chr12 65804374 65804607 -77981848 - MER21A LTR ERV1 -669 262 21 4828 146 23 17 chr12 65804611 65805793 -77980662 + L1PB4 LINE L1 4970 6156 0 389 235 35 0 chr12 65805801 65805886 -77980569 - L1MC/D LINE L1 -763 5570 5483 746 193 7 0 chr12 65805886 65806026 -77980429 - FRAM SINE Alu -4 172 32 1022 188 85 89 chr12 65806026 65806446 -77980009 - L1MC/D LINE L1 -743 5403 5066 551 53 0 0 chr12 65807012 65807088 -77979367 - L1PA4 LINE L1 0 6155 6080 512 42 28 0 chr12 65807101 65807173 -77979282 - L1PA4 LINE L1 -2 6153 6080 205 315 69 39 chr12 65807208 65807338 -77979117 + L2 LINE L2 3175 3308 -5 506 91 26 0 chr12 65808155 65808232 -77978223 - MADE1 DNA Mariner 0 80 2 378 289 62 8 chr12 65808471 65808599 -77977856 + MIR SINE MIR 74 208 -54 2160 123 0 0 chr12 65808627 65808919 -77977536 + AluSg SINE Alu 6 297 -13 317 273 124 25 chr12 65809284 65809405 -77977050 + MIR SINE MIR 11 143 -119 983 222 0 0 chr12 65809413 65809598 -77976857 + MER77 LTR ERV1 1 185 -420 232 273 30 0 chr12 65809643 65809709 -77976746 + MIR SINE MIR 159 226 -36 313 357 89 9 chr12 65810912 65811136 -77975319 - MIR SINE MIR -14 248 7 386 238 160 25 chr12 65811545 65811704 -77974751 - MIR SINE MIR -54 208 17 198 238 16 48 chr12 65812474 65812537 -77973918 - MIR SINE MIR -100 108 48 1049 169 12 0 chr12 65813068 65813240 -77973215 - FAM SINE Alu -1 174 1 881 165 211 35 chr12 65813740 65814000 -77972455 - LOR1a LTR ERV1 0 497 192 627 228 32 32 chr12 65813997 65814155 -77972300 - LOR1b LTR ERV1 -189 272 115 * 2241 127 0 0 chr12 65814280 65814587 -77971868 - AluSx SINE Alu -5 307 1 513 272 147 26 chr12 65815030 65815298 -77971157 + L1ME3 LINE L1 4444 4757 -1389 2004 161 195 12 chr12 65815298 65815801 -77970654 + LTR49 LTR ERV1 1 595 0 513 272 147 26 chr12 65815801 65815845 -77970610 + L1ME3 LINE L1 4757 4794 -1352 2220 218 55 80 chr12 65815850 65816224 -77970231 + L1MC4 LINE L1 7258 7640 -402 3135 138 16 2 chr12 65816224 65816723 -77969732 + MER84 LTR ERV1 2 507 0 2220 218 55 80 chr12 65816723 65817152 -77969303 + L1MC4 LINE L1 7640 8041 -1 837 310 78 29 chr12 65817159 65817788 -77968667 + L1ME3 LINE L1 5263 5922 -240 481 283 0 0 chr12 65818108 65818214 -77968241 + L2 LINE L2 3189 3294 -19 3629 241 75 123 chr12 65818956 65821144 -77965311 + L2 LINE L2 189 2269 -1045 1946 125 41 16 chr12 65821144 65821464 -77964991 - MER1B DNA MER1_type -11 328 1 230 318 116 44 chr12 65822061 65822697 -77963758 + L2 LINE L2 1708 2389 -925 252 298 289 0 chr12 65822877 65822991 -77963464 + L2 LINE L2 2907 3053 -219 28 0 0 0 chr12 65823020 65823048 -77963407 + AT_rich Low_complexity Low_complexity 1 28 0 264 370 46 19 chr12 65823061 65823169 -77963286 + L2 LINE L2 3144 3254 -18 342 347 41 88 chr12 65823596 65823959 -77962496 - L2 LINE L2 0 3272 2927 1995 153 0 14 chr12 65824060 65824354 -77962101 - AluJb SINE Alu -17 295 6 4973 52 3 0 chr12 65825404 65826018 -77960437 - L1PA7 LINE L1 -13 6141 5526 24 32 0 0 chr12 65826031 65826062 -77960393 + AT_rich Low_complexity Low_complexity 1 31 0 969 138 52 19 chr12 65826157 65826367 -77960088 - L1MC3 LINE L1 0 7785 7569 820 253 62 12 chr12 65826382 65826706 -77959749 - L1MA4 LINE L1 0 6300 5961 * 3568 183 139 85 chr12 65826686 65827071 -77959384 - L1MC3 LINE L1 -214 7571 7208 248 260 0 0 chr12 65827071 65827144 -77959311 - MLT1F1 LTR MaLR -453 114 42 3568 183 139 85 chr12 65827144 65827868 -77958587 - L1MC3 LINE L1 -577 7208 6326 249 268 60 87 chr12 65827968 65828151 -77958304 - L2 LINE L2 -576 2738 2561 270 336 50 43 chr12 65828260 65828400 -77958055 - MIR3 SINE MIR -22 186 46 5843 111 7 8 chr12 65828906 65830598 -77955857 - L1PA15 LINE L1 -13 6152 4480 314 315 46 0 chr12 65831137 65831245 -77955210 + MIR SINE MIR 30 142 -66 5763 154 12 25 chr12 65831740 65832777 -77953678 - L1MA7 LINE L1 -5 6286 5264 4474 206 83 100 chr12 65832800 65833937 -77952518 - L1MA7 LINE L1 -1063 5083 3802 222 37 0 0 chr12 65833937 65833964 -77952491 + (TG)n Simple_repeat Simple_repeat 2 28 0 4474 206 83 100 chr12 65833964 65834909 -77951546 - L1MA7 LINE L1 -2344 3802 2842 15262 34 7 1 chr12 65834909 65837402 -77949053 + L1PA4 LINE L1 3659 6155 0 352 200 0 0 chr12 65839140 65839200 -77947255 + MER5B DNA MER1_type 3 62 -116 238 139 0 0 chr12 65839194 65839230 -77947225 - MER5B DNA MER1_type -139 39 4 * 1902 116 0 66 chr12 65839389 65839708 -77946747 - AluSx SINE Alu -14 298 1 2044 149 3 0 chr12 65840365 65840673 -77945782 + AluSx SINE Alu 1 309 -3 387 344 45 8 chr12 65840962 65841209 -77945246 + HAL1 LINE L1 1391 1646 -861 31723 121 21 20 chr12 65841516 65847635 -77938820 + L1PA6 LINE L1 12 6135 -19 180 0 0 0 chr12 65847635 65847655 -77938800 + (TA)n Simple_repeat Simple_repeat 1 20 0 3165 63 8 0 chr12 65847655 65848038 -77938417 + L1PA7 LINE L1 5769 6154 0 307 254 106 58 chr12 65848576 65849028 -77937427 + L1ME LINE L1 2685 3158 -2988 352 351 70 0 chr12 65849173 65849358 -77937097 + L1ME LINE L1 4616 4813 -1333 1121 145 0 11 chr12 65849359 65849538 -77936917 - AluSg/x SINE Alu -2 310 134 2332 96 0 7 chr12 65849538 65849841 -77936614 - AluY SINE Alu -9 302 2 666 296 86 32 chr12 65850006 65850649 -77935806 + L1ME LINE L1 4988 5660 -502 226 250 0 0 chr12 65850752 65850800 -77935655 + L1ME LINE L1 5771 5818 -303 414 150 200 10 chr12 65851199 65851299 -77935156 - LTR67 LTR ERVL -11 546 428 195 69 0 0 chr12 65853767 65853796 -77932659 + (A)n Simple_repeat Simple_repeat 1 29 0 240 250 0 69 chr12 65854382 65854454 -77932001 + L2 LINE L2 3206 3272 0 881 238 5 28 chr12 65854483 65854697 -77931758 + MER3 DNA MER1_type 1 209 0 509 252 170 0 chr12 65854728 65854863 -77931592 + MER5A DNA MER1_type 26 183 -6 247 211 18 0 chr12 65856245 65856302 -77930153 + L2 LINE L2 3213 3270 -2 350 350 58 0 chr12 65857148 65857268 -77929187 + L2 LINE L2 3116 3242 -30 797 218 36 0 chr12 65857270 65857435 -77929020 - MER45A DNA AcHobo -7 171 1 637 353 47 26 chr12 65857485 65858023 -77928432 + L2 LINE L2 2219 2767 -547 250 277 84 0 chr12 65858288 65858371 -77928084 + L2 LINE L2 3224 3313 0 2135 123 0 7 chr12 65859618 65859918 -77926537 + AluSx SINE Alu 1 298 -14 622 304 122 47 chr12 65860268 65860738 -77925717 + L1MC4a LINE L1 5315 5837 -1971 2057 117 7 7 chr12 65860738 65861037 -77925418 + AluSx SINE Alu 1 299 -13 622 304 122 47 chr12 65861037 65861138 -77925317 + L1MC4a LINE L1 5837 5929 -1879 782 227 11 0 chr12 65861168 65861353 -77925102 + MER76 LTR ERV 1 187 -501 739 275 103 20 chr12 65861368 65861670 -77924785 + MER76 LTR ERV 328 654 -34 40 21 0 0 chr12 65861730 65861777 -77924678 + AT_rich Low_complexity Low_complexity 1 47 0 895 152 0 0 chr12 65861777 65861909 -77924546 - AluJo SINE Alu -178 134 3 1821 171 3 10 chr12 65862460 65862770 -77923685 + AluJo SINE Alu 1 308 -4 234 0 0 0 chr12 65862960 65862986 -77923469 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1353 216 62 10 chr12 65863493 65863682 -77922773 - AluJb SINE Alu -4 308 97 2437 83 3 0 chr12 65863682 65863984 -77922471 - AluSp SINE Alu -9 304 2 1353 216 62 10 chr12 65863984 65864085 -77922370 - AluJb SINE Alu -215 97 3 1220 101 0 0 chr12 65864646 65864814 -77921641 + AluYa5 SINE Alu 136 303 -8 342 0 0 0 chr12 65865079 65865117 -77921338 + (CA)n Simple_repeat Simple_repeat 2 39 0 3253 181 29 16 chr12 65866656 65867274 -77919181 - L1MB7 LINE L1 -17 6167 5542 464 263 115 51 chr12 65867837 65868168 -77918287 + L3b LINE CR1 1112 1463 -120 435 355 68 19 chr12 65869402 65869709 -77916746 - L2 LINE L2 -859 2455 2134 283 271 0 0 chr12 65869907 65869977 -77916478 + MER103 DNA DNA 48 117 -49 1502 170 11 15 chr12 65870856 65871121 -77915334 + AluJb SINE Alu 24 287 -25 241 222 71 50 chr12 65871122 65871221 -77915234 + L3 LINE CR1 253 353 -1224 184 256 90 39 chr12 65871537 65871615 -77914840 + L3 LINE CR1 1078 1159 -418 1528 162 113 72 chr12 65875320 65875752 -77910703 + LTR7 LTR ERV1 1 450 0 3952 176 30 48 chr12 65875752 65877307 -77909148 + HERVH LTR ERV1 1 1462 -5192 333 204 61 31 chr12 65877924 65878022 -77908433 + L1ME4a LINE L1 5965 6065 -56 458 153 14 0 chr12 65879024 65879096 -77907359 + LTR32 LTR ERVL 16 88 -383 1361 172 25 17 chr12 65879111 65879349 -77907106 + LTR32 LTR ERVL 232 471 0 218 324 95 0 chr12 65880276 65880350 -77906105 - MIR3 SINE MIR -35 173 93 303 310 31 23 chr12 65881154 65881283 -77905172 - L2 LINE L2 -1 3312 3183 349 337 147 13 chr12 65881389 65881763 -77904692 - L2 LINE L2 -337 2977 2554 278 294 0 12 chr12 65883984 65884069 -77902386 - MLT1J2 LTR MaLR 0 450 367 227 270 95 14 chr12 65884114 65884188 -77902267 - MLT1J1 LTR MaLR -170 276 197 1378 214 71 41 chr12 65884198 65884637 -77901818 - MLT1C LTR MaLR -6 461 10 335 305 140 6 chr12 65884646 65884810 -77901645 - MLT1J2 LTR MaLR -264 186 1 2031 92 0 4 chr12 65884939 65885212 -77901243 + AluSg SINE Alu 18 289 -21 3062 104 24 19 chr12 65886227 65886689 -77899766 - MER4C LTR ERV1 0 465 2 930 238 27 61 chr12 65886734 65886995 -77899460 - MIR SINE MIR 0 262 11 387 0 0 0 chr12 65887594 65887637 -77898818 + (CA)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr12 65887844 65887888 -77898567 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 299 0 65 chr12 65888227 65888304 -77898151 - MIR SINE MIR -2 260 189 223 275 108 42 chr12 65888369 65888489 -77897966 + L2 LINE L2 3186 3313 0 * 781 270 21 21 chr12 65888480 65888669 -77897786 - MIR SINE MIR -62 200 12 513 329 110 8 chr12 65888689 65888926 -77897529 - MIR SINE MIR -1 261 1 1923 127 0 3 chr12 65889416 65889730 -77896725 + AluSc SINE Alu 1 313 0 1460 203 7 7 chr12 65889744 65890030 -77896425 + AluJo SINE Alu 3 288 -24 26 30 0 0 chr12 65890030 65890063 -77896392 + AT_rich Low_complexity Low_complexity 1 33 0 405 278 64 69 chr12 65890669 65890842 -77895613 - MIR3 SINE MIR -17 191 20 1634 183 38 0 chr12 65890900 65891190 -77895265 - AluJb SINE Alu -11 301 1 433 310 45 26 chr12 65891424 65891579 -77894876 + MIR3 SINE MIR 43 200 -8 225 261 0 31 chr12 65891553 65891618 -77894837 - MER5A DNA MER1_type -66 123 61 * 229 245 14 47 chr12 65891747 65891819 -77894636 + MER5B DNA MER1_type 109 189 0 195 42 0 0 chr12 65892167 65892191 -77894264 + (CA)n Simple_repeat Simple_repeat 2 25 0 614 287 191 39 chr12 65892287 65892396 -77894059 + L2 LINE L2 2807 2898 -415 2517 111 5 16 chr12 65892396 65892764 -77893691 - THE1B LTR MaLR 0 364 1 614 287 191 39 chr12 65892764 65893093 -77893362 + L2 LINE L2 2898 3312 -1 298 245 41 51 chr12 65893918 65894016 -77892439 + L2 LINE L2 3209 3305 -8 377 140 35 0 chr12 65894522 65894579 -77891876 + AluSg/x SINE Alu 119 177 -123 987 279 25 19 chr12 65894811 65895126 -77891329 + MLT1J1 LTR MaLR 3 319 -127 1509 176 72 0 chr12 65895218 65895563 -77890892 + AluJo SINE Alu 2 367 0 2170 97 0 34 chr12 65895574 65895895 -77890560 - AluSg SINE Alu 0 310 1 235 386 20 0 chr12 65895934 65896035 -77890420 - L3 LINE CR1 -83 1494 1392 894 258 62 0 chr12 65896056 65896296 -77890159 - MIR SINE MIR 0 262 8 307 139 38 177 chr12 65896546 65896704 -77889751 + MIR SINE MIR 127 262 0 500 313 141 47 chr12 65896709 65896850 -77889605 - L3 LINE CR1 -570 1007 881 1673 149 20 34 chr12 65896850 65897145 -77889310 - AluJb SINE Alu -12 300 10 500 313 141 47 chr12 65897145 65897406 -77889049 - L3 LINE CR1 -696 881 567 773 185 154 0 chr12 65898093 65898255 -77888200 - MER5A DNA MER1_type -2 187 1 1858 152 0 13 chr12 65899371 65899680 -77886775 - AluJb SINE Alu -7 305 1 240 213 287 9 chr12 65899881 65899989 -77886466 - HsTC2 DNA Tc2 -13 1885 30 352 290 74 56 chr12 65900032 65900263 -77886192 + MIR SINE MIR 1 235 -27 330 67 0 0 chr12 65900987 65901032 -77885423 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 305 321 37 9 chr12 65901058 65901167 -77885288 - L2 LINE L2 -4 3268 3157 210 289 115 0 chr12 65901417 65901469 -77884986 - L2 LINE L2 -14 3299 3242 1954 146 3 0 chr12 65901507 65901815 -77884640 + AluSx SINE Alu 1 309 -3 1691 150 45 0 chr12 65902359 65902645 -77883810 + AluJb SINE Alu 1 299 -13 288 0 0 0 chr12 65903750 65903782 -77882673 + (CA)n Simple_repeat Simple_repeat 2 33 0 276 252 40 73 chr12 65904315 65904466 -77881989 + MIR SINE MIR 67 212 -50 408 205 291 13 chr12 65905532 65905683 -77880772 + MIR SINE MIR 70 262 0 1977 105 3 14 chr12 65907355 65907649 -77878806 - AluSc SINE Alu -18 291 1 233 222 56 19 chr12 65907800 65907854 -77878601 - MIR3 SINE MIR -39 169 114 203 194 0 0 chr12 65908024 65908060 -77878395 + A-rich Low_complexity Low_complexity 1 36 0 299 246 380 15 chr12 65908576 65908918 -77877537 + LTR33 LTR ERVL 55 521 0 679 178 22 37 chr12 65909714 65909849 -77876606 + FLAM_A SINE Alu 1 133 0 2072 107 3 3 chr12 65910900 65911198 -77875257 - AluSx SINE Alu -14 298 1 666 270 160 0 chr12 65912385 65912622 -77873833 - L2 LINE L2 -20 3293 3019 275 252 143 50 chr12 65912903 65913022 -77873433 + L2 LINE L2 3175 3304 -9 359 286 111 41 chr12 65913369 65913540 -77872915 - MER5A DNA MER1_type -6 183 1 196 289 156 11 chr12 65914576 65914637 -77871818 + MIR SINE MIR 40 91 -117 1629 176 33 3 chr12 65914637 65914938 -77871517 - AluJb SINE Alu -2 310 1 196 289 156 11 chr12 65914938 65914966 -77871489 + MIR SINE MIR 91 142 -66 209 271 0 0 chr12 65915514 65915562 -77870893 + MIR SINE MIR 23 70 -192 200 415 0 0 chr12 65915810 65915904 -77870551 + MIR3 SINE MIR 108 201 -7 445 274 48 0 chr12 65916512 65916636 -77869819 - MER94 DNA DNA -1 133 4 1232 139 11 0 chr12 65916949 65917129 -77869326 - MER52A LTR ERV1 -864 891 710 7595 176 174 19 chr12 65917216 65918735 -77867720 + MER52A LTR ERV1 1 1755 0 325 333 83 0 chr12 65918740 65918860 -77867595 + MER5A DNA MER1_type 4 133 -56 1475 175 10 43 chr12 65918863 65919166 -77867289 - AluJb SINE Alu -17 295 3 1943 139 14 0 chr12 65919613 65919908 -77866547 - AluSx SINE Alu -13 299 1 2224 90 0 0 chr12 65919917 65920206 -77866249 - AluSc SINE Alu -20 289 1 547 147 110 29 chr12 65920427 65920563 -77865892 - MER69 DNA AcHobo 0 2526 2380 598 217 133 26 chr12 65920927 65921116 -77865339 + MLT1F LTR MaLR 25 213 -336 468 226 14 7 chr12 65921122 65921268 -77865187 + CT-rich Low_complexity Low_complexity 2 148 0 678 209 8 8 chr12 65921269 65921398 -77865057 - FLAM_A SINE Alu 0 133 5 679 244 134 33 chr12 65921422 65921729 -77864726 + MLT1F LTR MaLR 181 518 -24 189 200 175 12 chr12 65921934 65922014 -77864441 - L2 LINE L2 -782 2532 2440 282 306 174 23 chr12 65922804 65923023 -77863432 - MIR SINE MIR -6 256 5 1675 183 0 7 chr12 65923441 65923725 -77862730 - AluJo SINE Alu -30 282 1 1470 148 6 100 chr12 65923761 65923948 -77862507 - AluJb SINE Alu -30 282 134 491 0 0 17 chr12 65923948 65924008 -77862447 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1470 148 6 100 chr12 65924008 65924131 -77862324 - AluJb SINE Alu -178 134 1 678 262 18 0 chr12 65926381 65926545 -77859910 + MIR SINE MIR 47 213 -49 1597 126 58 0 chr12 65926556 65926833 -77859622 + L1MA7 LINE L1 5998 6290 -1 1447 178 65 4 chr12 65928197 65928472 -77857983 - AluJo SINE Alu -20 292 1 2107 119 0 0 chr12 65928655 65928958 -77857497 + AluSx SINE Alu 8 310 -2 322 201 26 0 chr12 65929053 65929131 -77857324 + MLT1J LTR MaLR 110 253 -338 275 306 61 0 chr12 65929138 65929236 -77857219 + MLT1L LTR MaLR 319 422 -193 323 145 159 0 chr12 65929328 65929397 -77857058 - MADE1 DNA Mariner 0 80 1 2035 144 0 0 chr12 65929635 65929941 -77856514 + AluSx SINE Alu 1 306 -6 375 324 151 35 chr12 65930037 65930567 -77855888 - L2 LINE L2 -215 3057 2467 330 67 0 0 chr12 65931091 65931136 -77855319 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 268 321 37 9 chr12 65931162 65931271 -77855184 - L2 LINE L2 -4 3268 3157 191 308 115 0 chr12 65931521 65931573 -77854882 - L2 LINE L2 -14 3258 3201 2072 146 3 0 chr12 65931611 65931919 -77854536 + AluSx SINE Alu 1 309 -3 1805 150 45 0 chr12 65932463 65932749 -77853706 + AluJb SINE Alu 1 299 -13 288 0 0 0 chr12 65933854 65933886 -77852569 + (CA)n Simple_repeat Simple_repeat 2 33 0 211 252 46 80 chr12 65934419 65934570 -77851885 + MIR SINE MIR 67 212 -50 333 221 14 17 chr12 65935636 65935787 -77850668 + MIR SINE MIR 70 262 0 244 349 62 16 chr12 65936172 65936364 -77850091 + MIR SINE MIR 29 229 -33 372 133 0 0 chr12 65936586 65936646 -77849809 - MER5B DNA MER1_type -117 61 2 326 269 149 29 chr12 65937595 65937770 -77848685 - MIR SINE MIR -13 249 54 1978 107 35 0 chr12 65938052 65938313 -77848142 - AluSx SINE Alu -16 296 27 765 268 132 104 chr12 65939106 65939963 -77846492 - L3 LINE CR1 -63 1514 634 2191 129 0 3 chr12 65940107 65940418 -77846037 - AluSq SINE Alu -2 311 2 399 312 88 28 chr12 65940576 65940826 -77845629 - L3 LINE CR1 -989 588 324 275 248 86 29 chr12 65941451 65941556 -77844899 + L2 LINE L2 2507 2617 -697 241 221 12 93 chr12 65941578 65941664 -77844791 - L2 LINE L2 -695 2619 2541 332 289 77 0 chr12 65941673 65941777 -77844678 + L2 LINE L2 2668 2779 -535 386 316 31 44 chr12 65941806 65942031 -77844424 + L2 LINE L2 3078 3299 -14 315 294 139 36 chr12 65942694 65942946 -77843509 + L2 LINE L2 3035 3312 -1 333 0 0 0 chr12 65943466 65943503 -77842952 + (GA)n Simple_repeat Simple_repeat 2 38 0 190 286 175 45 chr12 65943782 65943936 -77842519 + MIR SINE MIR 14 187 -75 360 0 0 0 chr12 65944897 65944937 -77841518 + (TG)n Simple_repeat Simple_repeat 2 41 0 460 243 21 14 chr12 65946056 65946196 -77840259 + MER112 DNA MER1_type 106 246 -14 367 211 22 11 chr12 65946283 65946373 -77840082 - L2 LINE L2 -4 3309 3219 364 273 45 26 chr12 65947428 65947582 -77838873 - MIR SINE MIR -8 254 98 22 35 0 0 chr12 65947736 65947765 -77838690 + AT_rich Low_complexity Low_complexity 1 29 0 281 238 168 20 chr12 65948658 65948759 -77837696 + L2 LINE L2 3189 3304 -9 1016 134 39 22 chr12 65949636 65949815 -77836640 - L1PA16 LINE L1 -4 6162 5981 247 309 95 30 chr12 65950348 65950516 -77835939 + L2 LINE L2 2882 3060 -212 2428 64 3 14 chr12 65950710 65951006 -77835449 + AluSp SINE Alu 1 293 -20 2087 110 7 32 chr12 65951169 65951477 -77834978 + AluSx SINE Alu 1 300 -12 442 246 163 35 chr12 65951842 65951919 -77834536 - MIR SINE MIR -22 240 174 1829 180 0 0 chr12 65951919 65952213 -77834242 - AluJb SINE Alu -18 294 1 442 246 163 35 chr12 65952213 65952338 -77834117 - MIR SINE MIR -88 174 12 1858 161 4 0 chr12 65954608 65954922 -77831533 + AluJb SINE Alu 1 315 0 1134 178 35 0 chr12 65955012 65955214 -77831241 + MER3 DNA MER1_type 1 209 0 346 248 7 117 chr12 65956956 65957101 -77829354 + MIR SINE MIR 19 147 -61 648 250 104 9 chr12 65957126 65957338 -77829117 + MIR SINE MIR 2 233 -29 1556 195 0 11 chr12 65957489 65957751 -77828704 - AluJb SINE Alu -53 259 1 792 234 0 0 chr12 65957901 65958059 -77828396 - FRAM SINE Alu -8 158 1 282 143 0 0 chr12 65958373 65958422 -77828033 + (GA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr12 65958508 65958529 -77827926 + AT_rich Low_complexity Low_complexity 1 21 0 213 23 47 47 chr12 65958578 65958621 -77827834 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 231 300 0 0 chr12 65959032 65959092 -77827363 - L2 LINE L2 -5 3267 3208 527 287 63 11 chr12 65959822 65959996 -77826459 - MER58A DNA MER1_type -37 187 5 217 177 229 62 chr12 65960359 65960455 -77826000 - MIR SINE MIR -33 229 118 310 289 72 7 chr12 65960589 65960741 -77825714 - MIR SINE MIR -65 197 36 297 249 81 1 chr12 65962588 65962700 -77823755 + MIR SINE MIR 37 154 -63 741 195 47 18 chr12 65962872 65963041 -77823414 - MER45A DNA AcHobo -4 174 1 234 303 110 13 chr12 65963208 65963363 -77823092 - MIR SINE MIR -7 255 86 237 289 144 16 chr12 65963582 65963776 -77822679 + L1ME LINE L1 5687 5905 -216 2485 144 10 13 chr12 65963846 65964229 -77822226 - MER47B DNA MER2_type 0 418 37 1178 184 154 54 chr12 65964326 65964657 -77821798 + MLT1A1 LTR MaLR 1 364 -1 1393 203 150 20 chr12 65964833 65965232 -77821223 + MER39 LTR ERV1 232 682 -25 1944 230 50 25 chr12 65965587 65966182 -77820273 - HsTC2 DNA Tc2 -3 1895 1286 1499 188 81 56 chr12 65966182 65966657 -77819798 + MER39 LTR ERV1 1 707 0 269 242 225 8 chr12 65966675 65966795 -77819660 - HsTC2 DNA Tc2 -1750 148 3 2178 105 32 0 chr12 65967842 65968127 -77818328 - AluSq SINE Alu -19 294 1 268 239 30 30 chr12 65968159 65968226 -77818229 + L2 LINE L2 3206 3272 0 2102 124 0 0 chr12 65968559 65968882 -77817573 - AluSx SINE Alu 0 323 1 1109 231 115 26 chr12 65970397 65970787 -77815668 - L1ME3A LINE L1 -2 6168 5744 2671 77 100 5 chr12 65970788 65971179 -77815276 + LTR7 LTR ERV1 20 447 -3 745 229 83 10 chr12 65971182 65971374 -77815081 - L1ME3A LINE L1 -433 5737 5532 1905 43 0 17 chr12 65973480 65973711 -77812744 - AluY SINE Alu -2 309 83 2171 99 0 18 chr12 65974194 65974478 -77811977 - AluSg SINE Alu -31 279 1 1895 172 13 62 chr12 65974871 65975255 -77811200 + MLT1A1 LTR MaLR 1 365 0 1579 188 10 16 chr12 65975681 65975984 -77810471 + AluJo SINE Alu 1 301 -11 1914 133 3 53 chr12 65976117 65976439 -77810016 - AluJb SINE Alu -6 306 1 501 333 49 58 chr12 65976449 65976879 -77809576 - L2 LINE L2 -2 3270 2845 304 331 48 0 chr12 65977118 65977242 -77809213 - MIR3 SINE MIR -34 174 45 195 69 0 0 chr12 65978139 65978168 -77808287 + (A)n Simple_repeat Simple_repeat 1 29 0 218 250 0 69 chr12 65978754 65978826 -77807629 + L2 LINE L2 3206 3272 0 866 234 5 28 chr12 65978855 65979069 -77807386 + MER3 DNA MER1_type 1 209 0 463 252 170 0 chr12 65979100 65979235 -77807220 + MER5A DNA MER1_type 26 183 -6 253 211 18 0 chr12 65980617 65980674 -77805781 + L2 LINE L2 3213 3270 -2 208 295 112 88 chr12 65980906 65981371 -77805084 + L2 LINE L2 1613 2088 -1226 353 350 58 0 chr12 65981520 65981640 -77804815 + L2 LINE L2 3116 3242 -30 814 218 36 0 chr12 65981642 65981807 -77804648 - MER45A DNA AcHobo -7 171 1 715 353 47 26 chr12 65981857 65982395 -77804060 + L2 LINE L2 2219 2767 -547 263 277 84 0 chr12 65982660 65982743 -77803712 + L2 LINE L2 3224 3313 0 2068 123 0 7 chr12 65983990 65984290 -77802165 + AluSx SINE Alu 1 298 -14 535 304 122 47 chr12 65984640 65985110 -77801345 + L1MC4a LINE L1 5315 5837 -1971 2224 104 0 0 chr12 65985110 65985409 -77801046 + AluSx SINE Alu 1 299 -13 535 304 122 47 chr12 65985409 65985510 -77800945 + L1MC4a LINE L1 5837 5929 -1879 832 227 11 0 chr12 65985540 65985725 -77800730 + MER76 LTR ERV 1 187 -501 776 271 103 20 chr12 65985740 65986042 -77800413 + MER76 LTR ERV 328 654 -34 40 21 0 0 chr12 65986102 65986149 -77800306 + AT_rich Low_complexity Low_complexity 1 47 0 853 152 0 0 chr12 65986149 65986281 -77800174 - AluJo SINE Alu -178 134 3 1717 171 3 10 chr12 65986832 65987142 -77799313 + AluJo SINE Alu 1 308 -4 234 0 0 0 chr12 65987332 65987358 -77799097 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1266 220 58 7 chr12 65987865 65988054 -77798401 - AluJb SINE Alu -4 308 97 2323 83 3 0 chr12 65988054 65988356 -77798099 - AluSp SINE Alu -9 304 2 1266 220 58 7 chr12 65988356 65988457 -77797998 - AluJb SINE Alu -215 97 3 1170 101 0 0 chr12 65989018 65989186 -77797269 + AluYa5 SINE Alu 136 303 -8 342 0 0 0 chr12 65989451 65989489 -77796966 + (CA)n Simple_repeat Simple_repeat 2 39 0 3214 178 29 16 chr12 65991028 65991646 -77794809 - L1MB7 LINE L1 -17 6167 5542 516 260 112 48 chr12 65992209 65992540 -77793915 + L3b LINE CR1 1112 1463 -120 453 353 69 26 chr12 65993735 65994081 -77792374 - L2 LINE L2 -820 2494 2134 274 271 0 0 chr12 65994279 65994349 -77792106 + MER103 DNA DNA 48 117 -49 1412 170 11 15 chr12 65995228 65995493 -77790962 + AluJb SINE Alu 24 287 -25 257 222 71 50 chr12 65995494 65995593 -77790862 + L3 LINE CR1 253 353 -1224 192 244 90 39 chr12 65995909 65995987 -77790468 + L3 LINE CR1 1078 1159 -418 1399 162 113 72 chr12 65999692 66000124 -77786331 + LTR7 LTR ERV1 1 450 0 4050 178 35 47 chr12 66000124 66001679 -77784776 + HERVH LTR ERV1 1 1247 -5738 329 204 61 31 chr12 66002296 66002394 -77784061 + L1ME4a LINE L1 5965 6065 -56 462 153 14 0 chr12 66003397 66003469 -77782986 + LTR32 LTR ERVL 16 88 -383 1375 172 25 17 chr12 66003484 66003722 -77782733 + LTR32 LTR ERVL 232 471 0 218 324 95 0 chr12 66004649 66004723 -77781732 - MIR3 SINE MIR -35 173 93 303 310 31 23 chr12 66005527 66005656 -77780799 - L2 LINE L2 -1 3312 3183 349 337 147 13 chr12 66005762 66006136 -77780319 - L2 LINE L2 -337 2977 2554 278 294 0 12 chr12 66008357 66008442 -77778013 - MLT1J2 LTR MaLR 0 450 367 227 270 95 14 chr12 66008487 66008561 -77777894 - MLT1J1 LTR MaLR -170 276 197 1378 214 71 41 chr12 66008571 66009010 -77777445 - MLT1C LTR MaLR -6 461 10 335 305 140 6 chr12 66009019 66009183 -77777272 - MLT1J2 LTR MaLR -264 186 1 2031 92 0 4 chr12 66009312 66009585 -77776870 + AluSg SINE Alu 18 289 -21 3062 104 24 19 chr12 66010600 66011062 -77775393 - MER4C LTR ERV1 0 465 2 930 238 27 61 chr12 66011107 66011368 -77775087 - MIR SINE MIR 0 262 11 387 0 0 0 chr12 66011967 66012010 -77774445 + (CA)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr12 66012217 66012261 -77774194 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 299 0 65 chr12 66012600 66012677 -77773778 - MIR SINE MIR -2 260 189 223 275 108 42 chr12 66012742 66012862 -77773593 + L2 LINE L2 3186 3313 0 * 781 270 21 21 chr12 66012853 66013042 -77773413 - MIR SINE MIR -62 200 12 513 329 110 8 chr12 66013062 66013299 -77773156 - MIR SINE MIR -1 261 1 2130 92 0 0 chr12 66013789 66014102 -77772353 + AluSc SINE Alu 1 313 0 1460 203 7 7 chr12 66014116 66014402 -77772053 + AluJo SINE Alu 3 288 -24 26 30 0 0 chr12 66014402 66014435 -77772020 + AT_rich Low_complexity Low_complexity 1 33 0 405 278 64 69 chr12 66015042 66015215 -77771240 - MIR3 SINE MIR -17 191 20 1634 183 38 0 chr12 66015273 66015563 -77770892 - AluJb SINE Alu -11 301 1 433 310 45 26 chr12 66015797 66015952 -77770503 + MIR3 SINE MIR 43 200 -8 225 261 0 31 chr12 66015926 66015991 -77770464 - MER5A DNA MER1_type -66 123 61 * 229 245 14 47 chr12 66016120 66016192 -77770263 + MER5B DNA MER1_type 109 189 0 195 42 0 0 chr12 66016540 66016564 -77769891 + (CA)n Simple_repeat Simple_repeat 2 25 0 614 287 191 39 chr12 66016660 66016769 -77769686 + L2 LINE L2 2807 2898 -415 2517 111 5 16 chr12 66016769 66017137 -77769318 - THE1B LTR MaLR 0 364 1 614 287 191 39 chr12 66017137 66017466 -77768989 + L2 LINE L2 2898 3312 -1 298 245 41 51 chr12 66018291 66018389 -77768066 + L2 LINE L2 3209 3305 -8 377 140 35 0 chr12 66018895 66018952 -77767503 + AluSg/x SINE Alu 121 179 -123 987 279 25 19 chr12 66019184 66019499 -77766956 + MLT1J1 LTR MaLR 3 319 -127 1509 176 72 0 chr12 66019591 66019936 -77766519 + AluJo SINE Alu 2 367 0 2170 97 0 34 chr12 66019947 66020268 -77766187 - AluSg SINE Alu 0 310 1 235 386 20 0 chr12 66020307 66020408 -77766047 - L3 LINE CR1 -83 1494 1392 894 258 62 0 chr12 66020429 66020669 -77765786 - MIR SINE MIR 0 262 8 307 139 38 177 chr12 66020919 66021077 -77765378 + MIR SINE MIR 127 262 0 500 313 141 47 chr12 66021082 66021223 -77765232 - L3 LINE CR1 -570 1007 881 1673 149 20 34 chr12 66021223 66021518 -77764937 - AluJb SINE Alu -12 300 10 500 313 141 47 chr12 66021518 66021779 -77764676 - L3 LINE CR1 -696 881 567 773 185 154 0 chr12 66022466 66022628 -77763827 - MER5A DNA MER1_type -2 187 1 1858 152 0 13 chr12 66023744 66024053 -77762402 - AluJb SINE Alu -7 305 1 240 213 287 9 chr12 66024254 66024362 -77762093 - HsTC2 DNA Tc2 -13 1885 30 352 290 74 56 chr12 66024405 66024636 -77761819 + MIR SINE MIR 1 235 -27 1977 105 3 14 chr12 66026104 66026398 -77760057 - AluSc SINE Alu -18 291 1 233 222 56 19 chr12 66026549 66026603 -77759852 - MIR3 SINE MIR -39 169 114 203 194 0 0 chr12 66026773 66026809 -77759646 + A-rich Low_complexity Low_complexity 1 36 0 299 246 380 15 chr12 66027325 66027667 -77758788 + LTR33 LTR ERVL 55 521 0 679 178 22 37 chr12 66028463 66028598 -77757857 + FLAM_A SINE Alu 1 133 0 1906 148 0 0 chr12 66029649 66029947 -77756508 - AluJb SINE Alu -14 298 1 1489 135 32 12 chr12 66029952 66030204 -77756251 - AluJo SINE Alu -26 286 30 322 299 232 19 chr12 66030498 66030705 -77755750 - MIR SINE MIR 0 262 12 1981 144 20 3 chr12 66031216 66031521 -77754934 + AluJo SINE Alu 1 310 -2 249 278 93 37 chr12 66031880 66031988 -77754467 + L2 LINE L2 3200 3313 0 24 0 0 0 chr12 66031992 66032016 -77754439 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 66032534 66032555 -77753900 + AT_rich Low_complexity Low_complexity 1 21 0 2131 112 0 27 chr12 66032561 66032856 -77753599 + AluSx SINE Alu 2 288 -24 2362 69 3 50 chr12 66034364 66034684 -77751771 + AluSp SINE Alu 1 305 -8 22 0 0 0 chr12 66035230 66035252 -77751203 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 66036357 66036379 -77750076 + AT_rich Low_complexity Low_complexity 1 22 0 2098 66 55 11 chr12 66036379 66036653 -77749802 - AluY SINE Alu -25 286 1 1992 146 0 7 chr12 66036656 66036950 -77749505 - AluSx SINE Alu -20 292 1 3560 151 69 14 chr12 66037050 66037672 -77748783 - MER21B LTR ERV1 0 863 208 1139 190 33 0 chr12 66037816 66038000 -77748455 - MER21B LTR ERV1 -673 190 1 269 298 44 9 chr12 66038789 66038903 -77747552 + MER94 DNA DNA 16 133 -1 2721 97 57 33 chr12 66038968 66039422 -77747033 - MER4C LTR ERV1 0 465 1 198 274 119 0 chr12 66039920 66040004 -77746451 + L2 LINE L2 3220 3313 0 189 0 0 0 chr12 66040365 66040386 -77746069 + (CATTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr12 66040413 66040435 -77746020 + AT_rich Low_complexity Low_complexity 1 22 0 1018 196 226 19 chr12 66040664 66040929 -77745526 - 7SLRNA srpRNA srpRNA 0 320 1 2273 109 0 10 chr12 66041247 66041558 -77744897 - AluSg SINE Alu -2 308 1 2051 110 38 3 chr12 66042236 66042527 -77743928 - AluSg SINE Alu -9 301 1 234 89 36 18 chr12 66043208 66043264 -77743191 + A-rich Low_complexity Low_complexity 1 57 0 1980 78 6 118 chr12 66043491 66043822 -77742633 - AluSx SINE Alu -16 296 3 2751 205 3 26 chr12 66044285 66044894 -77741561 + L1 LINE L1 4808 5402 -744 732 207 94 5 chr12 66044904 66045117 -77741338 + L1M4 LINE L1 3949 4180 -1966 812 231 12 0 chr12 66045123 66045283 -77741172 + AluSg/x SINE Alu 131 292 -20 421 252 79 44 chr12 66045308 66045585 -77740870 - L1M4 LINE L1 -4833 1709 1495 2873 16 0 0 chr12 66045585 66045896 -77740559 - AluYa5 SINE Alu 0 311 1 421 252 79 44 chr12 66045896 66045935 -77740520 - L1M4 LINE L1 -5047 1495 1459 5771 121 49 12 chr12 66045958 66046922 -77739533 + L1MA9 LINE L1 5314 6312 0 455 269 75 96 chr12 66047254 66047391 -77739064 - L2 LINE L2 -5 3267 3129 2265 111 140 8 chr12 66047391 66047769 -77738686 + MSTA LTR MaLR 1 428 0 455 269 75 96 chr12 66047769 66048278 -77738177 - L2 LINE L2 -143 3129 2624 180 362 0 0 chr12 66048396 66048454 -77738001 + MIR SINE MIR 20 77 -131 1787 171 21 0 chr12 66048772 66049053 -77737402 - AluJb SINE Alu -25 287 1 524 242 121 9 chr12 66049060 66049283 -77737172 - MIR SINE MIR -8 254 7 231 210 65 0 chr12 66049601 66049663 -77736792 + L2 LINE L2 2992 3057 -215 1858 161 24 0 chr12 66049981 66050272 -77736183 - AluSx SINE Alu -14 298 1 268 294 94 12 chr12 66050958 66051043 -77735412 + L2 LINE L2 3214 3305 -8 376 233 147 0 chr12 66051647 66051763 -77734692 + MIR SINE MIR 20 152 -110 273 310 11 0 chr12 66051836 66051923 -77734532 - L2 LINE L2 -35 3278 3191 399 311 13 48 chr12 66052021 66052197 -77734258 + L1MD2 LINE L1 5992 6143 -23 2687 92 22 5 chr12 66052452 66052821 -77733634 + THE1C LTR MaLR 1 375 0 348 284 157 0 chr12 66052840 66052974 -77733481 - MIR SINE MIR -74 188 34 748 225 238 38 chr12 66054403 66054768 -77731687 + Charlie7 DNA MER1_type 288 725 -1887 216 338 0 0 chr12 66054768 66054839 -77731616 + MIR SINE MIR 192 262 0 34 65 0 0 chr12 66054873 66054935 -77731520 + AT_rich Low_complexity Low_complexity 1 62 0 1573 168 7 27 chr12 66055007 66055305 -77731150 - AluJo SINE Alu -20 292 1 832 112 30 22 chr12 66055305 66055439 -77731016 - AluJo SINE Alu -177 135 1 838 238 52 0 chr12 66056539 66056749 -77729706 - MIR SINE MIR 0 262 42 254 217 33 22 chr12 66056914 66057006 -77729449 + L1M4 LINE L1 2872 2964 -3182 384 225 219 27 chr12 66057091 66057222 -77729233 + MIR SINE MIR 8 112 -150 1760 184 46 11 chr12 66057222 66057570 -77728885 + MER46B DNA MER2_type 1 235 -1 384 225 219 27 chr12 66057570 66057625 -77728830 + MIR SINE MIR 112 230 -32 450 65 0 0 chr12 66058038 66058100 -77728355 + (A)n Simple_repeat Simple_repeat 1 62 0 2453 87 0 0 chr12 66058102 66058413 -77728042 + AluY SINE Alu 1 311 0 2051 132 6 6 chr12 66059731 66060042 -77726413 - AluSx SINE Alu -1 311 1 2175 105 10 3 chr12 66060052 66060348 -77726107 - AluSg SINE Alu -12 298 1 185 0 40 0 chr12 66060575 66060600 -77725855 + (TTG)n Simple_repeat Simple_repeat 2 27 0 39093 77 19 7 chr12 66060730 66066817 -77719638 + L1PA6 LINE L1 11 6154 0 2085 134 3 0 chr12 66067090 66067380 -77719075 + AluSx SINE Alu 2 292 -20 213 341 149 26 chr12 66067956 66068384 -77718071 + L2 LINE L2 2182 2662 -652 248 344 15 30 chr12 66068592 66068723 -77717732 + L2 LINE L2 2932 3060 -212 668 301 157 23 chr12 66069148 66069616 -77716839 + L2 LINE L2 2768 3292 -21 1947 161 43 5 chr12 66069656 66070450 -77716005 + L1MB3 LINE L1 5272 6183 0 2531 56 0 0 chr12 66071163 66071476 -77714979 - AluY SINE Alu 0 313 1 287 248 150 23 chr12 66071476 66071609 -77714846 - MIR SINE MIR -111 151 2 2488 76 3 0 chr12 66071771 66072074 -77714381 - AluY SINE Alu -7 304 1 333 47 0 0 chr12 66072619 66072662 -77713793 + (TG)n Simple_repeat Simple_repeat 2 44 0 241 239 0 0 chr12 66072684 66072751 -77713704 - L1MC4 LINE L1 -1339 6703 6637 748 226 26 9 chr12 66074274 66074502 -77711953 - L1MD3 LINE L1 0 7995 7684 225 282 19 24 chr12 66075316 66075411 -77711044 - MIR SINE MIR -102 106 16 37 23 0 0 chr12 66076596 66076640 -77709815 + AT_rich Low_complexity Low_complexity 1 44 0 294 116 0 0 chr12 66077225 66077268 -77709187 + L2 LINE L2 3230 3272 0 330 298 0 30 chr12 66077306 66077437 -77709018 - MIR SINE MIR 0 262 136 191 284 30 0 chr12 66077449 66077516 -77708939 + MIR SINE MIR 69 137 -125 344 267 160 37 chr12 66078489 66078676 -77707779 + MIR SINE MIR 51 260 -2 2958 3 0 0 chr12 66079561 66079872 -77706583 + AluY SINE Alu 1 311 0 973 273 30 45 chr12 66080211 66080548 -77705907 + MER102b DNA MER1_type 6 337 -4 1486 196 0 25 chr12 66080700 66080965 -77705490 + AluJo SINE Alu 24 283 -29 375 41 0 0 chr12 66080965 66081014 -77705441 + (GA)n Simple_repeat Simple_repeat 2 50 0 1486 196 0 25 chr12 66081014 66081029 -77705426 + AluJo SINE Alu 283 297 -15 1647 188 41 22 chr12 66081038 66081358 -77705097 - MLT1A1 LTR MaLR -35 330 5 1429 222 103 6 chr12 66082172 66082483 -77703972 + MER58B DNA MER1_type 1 341 0 361 221 39 0 chr12 66082489 66082566 -77703889 - MER116 DNA Mariner 0 80 1 644 235 59 18 chr12 66083745 66083915 -77702540 + MIR SINE MIR 2 178 -84 2044 121 0 3 chr12 66083955 66084265 -77702190 + AluSx SINE Alu 1 309 0 193 216 95 54 chr12 66084272 66084346 -77702109 - MIR SINE MIR -50 212 136 2748 156 34 34 chr12 66084996 66085463 -77700992 - LTR24 LTR ERV1 0 467 1 252 276 69 23 chr12 66085593 66085680 -77700775 + L2 LINE L2 3222 3312 -1 390 281 130 52 chr12 66086105 66086297 -77700158 + L3 LINE CR1 1371 1577 0 281 309 158 39 chr12 66086587 66087098 -77699357 + L2 LINE L2 2175 2746 -568 2213 91 7 10 chr12 66087138 66087434 -77699021 + AluSx SINE Alu 1 295 -17 294 259 62 27 chr12 66087735 66087847 -77698608 + MIR SINE MIR 2 117 -145 308 366 62 0 chr12 66088316 66088428 -77698027 + L2 LINE L2 3149 3267 -5 580 269 99 0 chr12 66089406 66089547 -77696908 - MER5A DNA MER1_type -1 188 34 261 331 126 11 chr12 66090250 66090425 -77696030 - MIR SINE MIR -64 198 4 195 293 262 18 chr12 66090432 66090596 -77695859 - L2 LINE L2 -1230 2084 1881 1977 136 3 23 chr12 66090878 66091186 -77695269 - AluJb SINE Alu -8 304 3 24 0 0 0 chr12 66091290 66091314 -77695141 + AT_rich Low_complexity Low_complexity 1 24 0 294 196 41 0 chr12 66091543 66091640 -77694815 + (TA)n Simple_repeat Simple_repeat 2 102 0 1361 69 0 0 chr12 66091660 66091820 -77694635 - U1 snRNA snRNA -2 163 4 577 268 75 37 chr12 66091896 66092342 -77694113 + L1MC4 LINE L1 6536 6963 -1079 2179 110 0 0 chr12 66092342 66092648 -77693807 + AluSq SINE Alu 1 306 0 577 268 75 37 chr12 66092648 66092780 -77693675 + L1MC4 LINE L1 6963 7088 -954 1817 163 35 64 chr12 66092780 66092873 -77693582 + MLT1A1 LTR MaLR 1 95 -270 2481 70 10 0 chr12 66092873 66093173 -77693282 + AluSg SINE Alu 1 303 -7 1817 163 35 64 chr12 66093173 66093453 -77693002 + MLT1A1 LTR MaLR 95 363 -2 577 268 75 37 chr12 66093453 66093817 -77692638 + L1MC4 LINE L1 7088 7471 -571 300 342 37 31 chr12 66093817 66093978 -77692477 + L1MC5 LINE L1 7319 7480 -481 506 211 179 18 chr12 66094067 66094290 -77692165 + L1MC4 LINE L1 7783 8041 -1 263 70 0 23 chr12 66094962 66095005 -77691450 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 423 200 172 14 chr12 66095411 66095556 -77690899 + MIR SINE MIR 85 252 -10 27 29 0 0 chr12 66095740 66095774 -77690681 + AT_rich Low_complexity Low_complexity 1 34 0 418 194 126 29 chr12 66096060 66096163 -77690292 - MER81 DNA DNA 0 114 2 2734 244 44 28 chr12 66096665 66097459 -77688996 - L1MEc LINE L1 -5553 843 37 931 87 106 25 chr12 66097472 66097633 -77688822 + L1MA5A LINE L1 6124 6297 0 238 246 62 0 chr12 66098078 66098143 -77688312 + L2 LINE L2 3189 3257 -15 208 77 51 0 chr12 66098978 66099017 -77687438 + (CCA)n Simple_repeat Simple_repeat 3 43 0 2491 119 19 16 chr12 66100928 66101297 -77685158 - THE1C LTR MaLR -5 370 1 187 328 16 0 chr12 66101482 66101543 -77684912 - MIR SINE MIR -120 142 81 186 158 0 26 chr12 66102187 66102225 -77684230 + L2 LINE L2 3218 3254 -18 614 234 95 0 chr12 66102696 66102854 -77683601 - Charlie8 DNA MER1_type -2153 264 92 1708 168 3 29 chr12 66103940 66104250 -77682205 - AluJb SINE Alu -10 302 1 871 203 28 6 chr12 66104967 66105149 -77681306 + MER20 DNA MER1_type 34 219 0 1457 136 9 4 chr12 66106493 66106721 -77679734 - AluJb SINE Alu -83 229 1 2147 214 125 4 chr12 66107242 66107746 -77678709 + MLT1F1 LTR MaLR 3 567 0 1966 54 0 25 chr12 66108489 66108730 -77677725 - AluY SINE Alu 0 311 77 225 314 50 21 chr12 66109777 66109917 -77676538 - MIR SINE MIR -115 147 4 559 271 154 0 chr12 66110264 66110452 -77676003 - MIR SINE MIR -44 218 2 378 332 74 41 chr12 66110466 66110876 -77675579 + L2 LINE L2 2626 3051 -262 308 279 0 0 chr12 66110913 66110974 -77675481 + L2 LINE L2 3207 3267 -5 298 349 132 33 chr12 66111220 66111613 -77674842 - L2 LINE L2 -508 2806 2375 4837 134 46 21 chr12 66111669 66112437 -77674018 + L1MB7 LINE L1 5322 6114 -70 1926 164 0 3 chr12 66112437 66112741 -77673714 - AluJb SINE Alu -9 303 1 4837 134 46 21 chr12 66112741 66112798 -77673657 + L1MB7 LINE L1 6114 6168 -16 263 70 0 23 chr12 66113974 66114017 -77672438 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 423 200 172 14 chr12 66114423 66114568 -77671887 + MIR SINE MIR 85 252 -10 27 29 0 0 chr12 66114752 66114786 -77671669 + AT_rich Low_complexity Low_complexity 1 34 0 418 194 126 29 chr12 66115072 66115175 -77671280 - MER81 DNA DNA 0 114 2 2749 243 44 29 chr12 66115677 66116472 -77669983 - L1MEc LINE L1 -5553 843 37 931 87 106 25 chr12 66116485 66116646 -77669809 + L1MA5A LINE L1 6124 6297 0 238 246 62 0 chr12 66117091 66117156 -77669299 + L2 LINE L2 3189 3257 -15 2491 119 19 16 chr12 66119941 66120310 -77666145 - THE1C LTR MaLR -5 370 1 187 328 16 0 chr12 66120495 66120556 -77665899 - MIR SINE MIR -120 142 81 186 158 0 26 chr12 66121200 66121238 -77665217 + L2 LINE L2 3218 3254 -18 614 234 95 0 chr12 66121709 66121867 -77664588 - Charlie8 DNA MER1_type -2153 264 92 1733 164 3 29 chr12 66122953 66123263 -77663192 - AluJb SINE Alu -10 302 1 910 199 28 0 chr12 66123978 66124159 -77662296 + MER20 DNA MER1_type 34 219 0 1457 136 9 4 chr12 66125503 66125731 -77660724 - AluJb SINE Alu -83 229 1 2147 214 125 4 chr12 66126252 66126756 -77659699 + MLT1F1 LTR MaLR 3 567 0 1960 54 0 29 chr12 66127499 66127741 -77658714 - AluY SINE Alu 0 311 77 225 314 50 21 chr12 66128789 66128929 -77657526 - MIR SINE MIR -115 147 4 559 271 154 0 chr12 66129272 66129460 -77656995 - MIR SINE MIR -44 218 2 378 332 74 41 chr12 66129474 66129884 -77656571 + L2 LINE L2 2626 3051 -262 308 279 0 0 chr12 66129921 66129982 -77656473 + L2 LINE L2 3207 3267 -5 298 349 132 33 chr12 66130228 66130621 -77655834 - L2 LINE L2 -508 2806 2375 4806 136 46 21 chr12 66130677 66131445 -77655010 + L1MB7 LINE L1 5322 6114 -70 1967 158 0 3 chr12 66131445 66131749 -77654706 - AluJb SINE Alu -9 303 1 4806 136 46 21 chr12 66131749 66131806 -77654649 + L1MB7 LINE L1 6114 6168 -16 348 251 47 94 chr12 66132853 66133044 -77653411 - MIR SINE MIR -25 237 56 254 301 128 23 chr12 66133405 66133538 -77652917 - MIR SINE MIR -67 195 49 549 326 101 49 chr12 66133617 66134212 -77652243 - L2 LINE L2 -4 3268 2602 208 224 0 61 chr12 66135104 66135153 -77651302 - MIR SINE MIR -172 90 45 541 337 192 32 chr12 66135783 66136708 -77649747 + L3 LINE CR1 432 1504 -73 188 291 122 34 chr12 66137424 66137572 -77648883 - MIR SINE MIR 0 262 102 2433 70 0 3 chr12 66137831 66138130 -77648325 - AluY SINE Alu -13 298 1 261 0 0 0 chr12 66138559 66138588 -77647867 + (A)n Simple_repeat Simple_repeat 1 29 0 2338 105 0 0 chr12 66138590 66138894 -77647561 + AluSx SINE Alu 1 304 -8 195 200 36 55 chr12 66139197 66139242 -77647213 + MER5B DNA MER1_type 1 46 -132 3765 69 4 4 chr12 66139242 66139707 -77646748 + L1PA6 LINE L1 5690 6154 0 329 307 18 18 chr12 66139758 66139872 -77646583 + MER5B DNA MER1_type 61 174 -4 216 205 0 0 chr12 66140071 66140110 -77646345 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 567 205 31 16 chr12 66141039 66141166 -77645289 + MLT2F LTR ERVL 1 129 -534 689 161 54 0 chr12 66141187 66141317 -77645138 + MLT1E3 LTR MaLR 53 189 -435 301 313 16 10 chr12 66141321 66141436 -77645019 + GA-rich Low_complexity Low_complexity 2 198 0 279 155 23 209 chr12 66141480 66141609 -77644846 + MLT2F LTR ERVL 552 656 -7 253 352 95 5 chr12 66141609 66141819 -77644636 + L2 LINE L2 2447 2675 -639 403 213 38 0 chr12 66141824 66141904 -77644551 + MER3 DNA MER1_type 1 83 -126 272 298 50 66 chr12 66142118 66142239 -77644216 - L2 LINE L2 -4 3268 3150 209 318 0 24 chr12 66142759 66142844 -77643611 + L2 LINE L2 2895 2977 -336 253 268 165 0 chr12 66142961 66143058 -77643397 + L2 LINE L2 3161 3273 -40 1927 148 3 43 chr12 66144138 66144463 -77641992 + AluSq SINE Alu 1 312 -1 382 145 89 25 chr12 66144537 66144627 -77641828 + L1MD3 LINE L1 7539 7838 -151 2085 188 146 60 chr12 66144627 66144851 -77641604 - MLT1E1 LTR MaLR 0 654 451 3049 65 3 0 chr12 66144851 66145205 -77641250 - THE1A LTR MaLR 0 355 1 2085 188 146 60 chr12 66145205 66145582 -77640873 - MLT1E1 LTR MaLR -203 451 1 360 206 137 38 chr12 66145583 66145714 -77640741 + L1MD3 LINE L1 7835 7978 -17 252 286 14 0 chr12 66147215 66147285 -77639170 - L2 LINE L2 -1 3312 3242 234 320 0 13 chr12 66147373 66147451 -77639004 - MIR SINE MIR -1 261 185 * 930 289 226 23 chr12 66147443 66148712 -77637743 - L2 LINE L2 -1 3312 1785 3522 222 15 32 chr12 66149092 66149308 -77637147 + L1M4 LINE L1 4529 4747 -1399 734 187 8 45 chr12 66149308 66149442 -77637013 + FLAM_A SINE Alu 1 129 -4 3522 222 15 32 chr12 66149442 66150108 -77636347 + L1M4 LINE L1 4747 5396 -750 1410 164 17 4 chr12 66150122 66150353 -77636102 + AluJb SINE Alu 10 243 -69 655 134 0 0 chr12 66150357 66150454 -77636001 + L1MC1 LINE L1 6237 6333 0 351 0 0 0 chr12 66150652 66150691 -77635764 + (CA)n Simple_repeat Simple_repeat 2 40 0 2201 107 17 0 chr12 66150762 66151060 -77635395 + AluSx SINE Alu 1 303 -9 4158 223 145 23 chr12 66151240 66152754 -77633701 - HsTC2 DNA Tc2 -4 1894 15 292 242 267 43 chr12 66152799 66152960 -77633495 + MLT1H1 LTR MaLR 14 210 -339 617 169 169 54 chr12 66152977 66153143 -77633312 + MER58C DNA MER1_type 2 186 -29 2100 114 88 50 chr12 66153143 66153398 -77633057 - MLT1B LTR MaLR 0 390 115 1768 152 3 96 chr12 66153398 66153720 -77632735 - AluJb SINE Alu -9 293 2 2100 114 88 50 chr12 66153720 66153840 -77632615 - MLT1B LTR MaLR -275 115 1 486 264 89 43 chr12 66153909 66154167 -77632288 + MLT1H1 LTR MaLR 286 555 0 304 290 136 19 chr12 66154441 66154603 -77631852 + MIR SINE MIR 58 238 -24 475 190 0 0 chr12 66154685 66154764 -77631691 + AluJ/FLAM SINE Alu 2 80 -232 184 288 61 45 chr12 66155107 66155173 -77631282 + L2 LINE L2 3197 3263 -9 418 195 24 0 chr12 66155361 66155443 -77631012 + MER5A DNA MER1_type 2 85 -104 2359 147 28 37 chr12 66155443 66155888 -77630567 + MSTB1 LTR MaLR 1 430 -2 243 278 0 0 chr12 66155904 66155958 -77630497 + MER5A DNA MER1_type 122 175 -14 7828 49 0 0 chr12 66156119 66157193 -77629262 + L1PA5 LINE L1 5077 6150 -4 834 126 7 30 chr12 66159224 66159359 -77627096 + FLAM_C SINE Alu 2 133 0 1356 180 148 16 chr12 66159761 66160072 -77626383 + MLT1A1 LTR MaLR 13 364 -1 191 342 215 0 chr12 66160073 66160152 -77626303 + MIR SINE MIR 51 146 -62 1082 25 0 0 chr12 66160158 66160280 -77626175 - L1PA5 LINE L1 -209 5945 5824 1626 52 5 0 chr12 66160280 66160493 -77625962 + L1PA5 LINE L1 5945 6164 0 219 291 89 73 chr12 66160634 66160785 -77625670 - MIR SINE MIR -45 163 8 2092 91 25 0 chr12 66162018 66162338 -77624117 + AluSg SINE Alu 1 327 0 582 284 82 10 chr12 66162505 66162713 -77623742 + MIR SINE MIR 31 253 -9 513 293 17 6 chr12 66163985 66164166 -77622289 + HsTC2c DNA Tc2 150 332 -397 1389 160 4 9 chr12 66164179 66164404 -77622051 - AluJb SINE Alu -15 297 74 1166 265 40 19 chr12 66164406 66164780 -77621675 + HsTC2c DNA Tc2 345 726 -3 912 261 46 8 chr12 66164914 66165152 -77621303 + MIR SINE MIR 11 257 -5 302 265 99 33 chr12 66165160 66165371 -77621084 + L1MC5 LINE L1 6688 6912 -1049 302 298 106 47 chr12 66167174 66167409 -77619046 - MIR SINE MIR -12 250 2 2104 106 26 22 chr12 66168069 66168381 -77618074 + AluSq SINE Alu 1 313 0 240 320 32 16 chr12 66168612 66168737 -77617718 - L2 LINE L2 -25 3288 3162 241 206 95 0 chr12 66168787 66168850 -77617605 - MIR SINE MIR -73 189 121 1276 293 107 21 chr12 66168953 66169783 -77616672 + L2 LINE L2 2368 3281 -32 465 329 50 18 chr12 66169939 66170204 -77616251 - L2 LINE L2 -202 3070 2790 277 299 51 51 chr12 66171627 66171744 -77614711 + L2 LINE L2 3155 3271 -1 272 310 178 0 chr12 66172283 66172412 -77614043 - MLT1I LTR MaLR -57 352 201 2066 130 3 0 chr12 66173652 66173945 -77612510 - AluSx SINE Alu -18 294 1 2150 161 122 3 chr12 66173980 66174366 -77612089 + MSTB1 LTR MaLR 1 432 0 441 239 31 27 chr12 66174605 66174774 -77611681 - MLT1I LTR MaLR -243 166 37 186 327 191 18 chr12 66176050 66176160 -77610295 + L2 LINE L2 3139 3267 -5 214 364 23 0 chr12 66178062 66178150 -77608305 - MIR SINE MIR -62 146 57 419 199 177 22 chr12 66178591 66178772 -77607683 + L1ME4a LINE L1 5676 5884 -237 1616 186 17 0 chr12 66180277 66180567 -77605888 - AluJb SINE Alu -16 296 2 183 80 0 0 chr12 66180570 66180595 -77605860 + (A)n Simple_repeat Simple_repeat 1 25 0 2118 106 0 14 chr12 66180858 66181172 -77605283 - AluSx SINE Alu 0 313 4 649 258 88 6 chr12 66181587 66181746 -77604709 + FAM SINE Alu 3 174 -1 362 283 25 8 chr12 66183212 66183332 -77603123 + L1MC4 LINE L1 7904 8025 -17 2166 118 0 13 chr12 66183333 66183647 -77602808 - AluSx SINE Alu -2 310 1 211 217 43 0 chr12 66184121 66184167 -77602288 - MIR3 SINE MIR -52 156 109 1863 143 0 20 chr12 66184711 66185011 -77601444 + AluSx SINE Alu 1 294 -18 1882 155 10 0 chr12 66185252 66185542 -77600913 + AluSx SINE Alu 5 297 -15 355 269 204 83 chr12 66186527 66186624 -77599831 + L1ME4a LINE L1 5256 5340 -2468 2158 121 3 0 chr12 66186624 66186929 -77599526 + AluSx SINE Alu 1 306 -6 355 269 204 83 chr12 66186929 66187229 -77599226 + L1ME4a LINE L1 5340 5701 -2107 232 255 155 47 chr12 66187244 66187329 -77599126 + L1ME4a LINE L1 5738 5812 -309 2400 98 0 6 chr12 66187329 66187644 -77598811 + AluSq SINE Alu 1 313 0 232 255 155 47 chr12 66187644 66187880 -77598575 + L1ME4a LINE L1 5812 6094 -27 223 269 34 67 chr12 66187953 66188072 -77598383 + MIR SINE MIR 48 162 -100 1437 207 175 12 chr12 66188514 66188915 -77597540 + MER31B LTR ERV1 1 466 0 636 229 132 8 chr12 66191572 66191755 -77594700 + MIR SINE MIR 23 211 -51 22 0 0 0 chr12 66192034 66192056 -77594399 + AT_rich Low_complexity Low_complexity 1 22 0 2675 51 0 0 chr12 66192580 66192893 -77593562 - AluSp SINE Alu 0 313 1 854 61 0 0 chr12 66195656 66195755 -77590700 + HY3 scRNA scRNA 1 99 -2 2214 99 10 7 chr12 66196895 66197198 -77589257 - AluSq SINE Alu -9 304 1 2615 46 0 0 chr12 66198064 66198366 -77588089 + AluY SINE Alu 1 302 -9 2328 79 10 7 chr12 66198400 66198705 -77587750 + AluSx SINE Alu 1 306 -6 890 230 161 45 chr12 66198736 66199071 -77587384 + L1MC4a LINE L1 7194 7567 -241 340 76 379 0 chr12 66199069 66199135 -77587320 + L1MD3 LINE L1 7835 7925 -70 * 2688 48 0 0 chr12 66199568 66199879 -77586576 - AluY SINE Alu 0 311 1 216 322 59 8 chr12 66200553 66200671 -77585784 + MIR SINE MIR 125 248 -14 186 211 183 56 chr12 66200793 66200864 -77585591 - MIR SINE MIR -119 143 64 279 191 57 72 chr12 66201903 66202134 -77584321 - MER39B LTR ERV1 -62 645 386 569 231 54 0 chr12 66202145 66202275 -77584180 + MER5A DNA MER1_type 53 189 0 265 182 26 13 chr12 66202680 66202757 -77583698 + (TA)n Simple_repeat Simple_repeat 2 79 0 234 231 104 107 chr12 66202836 66203134 -77583321 - MER34 LTR ERV1 0 542 246 1183 226 73 63 chr12 66203206 66203734 -77582721 + MER39 LTR ERV1 1 565 0 409 187 73 24 chr12 66203749 66203872 -77582583 - MER34B LTR ERV1 0 565 437 65 83 0 0 chr12 66203877 66204033 -77582422 + AT_rich Low_complexity Low_complexity 1 156 0 733 228 66 66 chr12 66204033 66204261 -77582194 - MER39 LTR ERV1 -220 487 260 250 259 12 35 chr12 66204361 66204446 -77582009 - MER34 LTR ERV1 -410 132 50 419 355 119 47 chr12 66204584 66205204 -77581251 + L2 LINE L2 2305 2969 -345 180 0 0 0 chr12 66205569 66205589 -77580866 + (A)n Simple_repeat Simple_repeat 1 20 0 2204 125 0 0 chr12 66205875 66206186 -77580269 - AluSx SINE Alu -1 311 1 189 0 0 0 chr12 66206394 66206415 -77580040 + (A)n Simple_repeat Simple_repeat 1 21 0 1110 136 104 27 chr12 66207042 66207263 -77579192 - MSTD LTR MaLR -4 392 155 14969 161 21 38 chr12 66207765 66209551 -77576904 - L1MA2 LINE L1 -8 7715 5901 279 0 0 0 chr12 66209551 66209582 -77576873 + (TG)n Simple_repeat Simple_repeat 2 32 0 14969 161 21 38 chr12 66209582 66211450 -77575005 - L1MA2 LINE L1 -1822 5901 4174 2254 100 0 0 chr12 66211450 66211741 -77574714 + AluSc SINE Alu 1 291 -18 14969 161 21 38 chr12 66211741 66212800 -77573655 - L1MA2 LINE L1 -3549 4174 3099 3211 129 110 0 chr12 66212784 66213312 -77573143 - L1MA2 LINE L1 -5127 2438 1853 * 3077 147 35 53 chr12 66213314 66213880 -77572575 - MER21A LTR ERV1 0 931 376 1270 113 157 9 chr12 66213885 66214115 -77572340 - MER21A LTR ERV1 -667 264 1 5737 179 12 2 chr12 66214115 66215079 -77571376 - L1MA2 LINE L1 -5710 1855 882 431 202 79 0 chr12 66215064 66215153 -77571302 - L1MA2 LINE L1 -7198 367 272 * 1025 93 0 0 chr12 66215153 66215282 -77571173 - AluSq/x SINE Alu -184 129 1 243 139 0 0 chr12 66215288 66215324 -77571131 - L1MA2 LINE L1 -7513 52 17 2936 189 26 87 chr12 66215480 66216138 -77570317 - L1M1 LINE L1 -6890 675 60 2015 127 7 3 chr12 66216138 66216449 -77570006 - AluSx SINE Alu 0 312 1 2936 189 26 87 chr12 66216449 66216491 -77569964 - L1M1 LINE L1 -7505 60 17 194 91 68 0 chr12 66217067 66217111 -77569344 + T-rich Low_complexity Low_complexity 5 51 0 1145 247 70 52 chr12 66218294 66218739 -77567716 + LTR37B LTR ERV1 9 461 -7 601 139 78 47 chr12 66219825 66219954 -77566501 + FLAM_C SINE Alu 1 133 0 2196 112 0 7 chr12 66219967 66220270 -77566185 + AluSq SINE Alu 1 301 -12 386 287 87 31 chr12 66220796 66220991 -77565464 - MIR SINE MIR -12 250 45 2507 183 34 2 chr12 66221142 66221585 -77564870 - LTR32 LTR ERVL 0 471 15 1907 269 44 20 chr12 66222320 66222860 -77563595 + MLT2E LTR ERVL 1 553 -75 332 282 138 32 chr12 66223312 66223500 -77562955 - MLT1K LTR MaLR -25 563 356 698 308 31 59 chr12 66223677 66224102 -77562353 - MLT1J2 LTR MaLR 0 450 38 3366 138 29 31 chr12 66224411 66224687 -77561768 - MER34C LTR ERV1 0 585 310 2862 113 0 0 chr12 66224687 66225051 -77561404 - THE1B LTR MaLR 0 364 1 3366 138 29 31 chr12 66225051 66225356 -77561099 - MER34C LTR ERV1 -275 310 5 258 276 35 11 chr12 66225393 66225480 -77560975 + MER103 DNA DNA 8 96 -70 648 192 51 6 chr12 66225813 66225969 -77560486 + Charlie5 DNA MER1_type 38 200 -2412 * 1312 147 66 8 chr12 66225967 66226225 -77560230 + Charlie5 DNA MER1_type 2352 2624 0 2721 54 9 0 chr12 66228082 66228416 -77558039 - L1P3 LINE L1 -466 5688 5352 710 47 60 1 chr12 66231060 66231181 -77555274 - L1P3 LINE L1 -772 5382 5255 3897 45 5 0 chr12 66231181 66231625 -77554830 + L1PA7 LINE L1 5693 6141 -13 329 237 54 0 chr12 66231632 66231725 -77554730 + L1M4 LINE L1 2670 2767 -3379 487 307 29 0 chr12 66232073 66232213 -77554242 - MIR3 SINE MIR -44 164 21 1624 187 32 3 chr12 66232622 66232905 -77553550 + AluJb SINE Alu 1 291 -21 207 279 0 29 chr12 66232957 66233025 -77553430 + GA-rich Low_complexity Low_complexity 1 66 0 226 216 0 0 chr12 66233425 66233476 -77552979 - HAL1 LINE L1 -6 2501 2451 24 32 0 0 chr12 66233477 66233508 -77552947 + AT_rich Low_complexity Low_complexity 1 31 0 3942 268 110 23 chr12 66233514 66235306 -77551149 + L2 LINE L2 1331 3270 -43 201 302 159 16 chr12 66235329 66235455 -77551000 - MIR3 SINE MIR -48 160 17 551 240 24 34 chr12 66235623 66235831 -77550624 + L1MC4a LINE L1 5665 5870 -1938 703 222 33 38 chr12 66235937 66236149 -77550306 + MER46C DNA MER2_type 81 291 -47 260 267 158 27 chr12 66236678 66236824 -77549631 + MIR3 SINE MIR 34 198 -10 311 246 278 8 chr12 66236834 66236960 -77549495 - MER5A DNA MER1_type 0 189 30 563 176 15 15 chr12 66238312 66238448 -77548007 - Charlie7 DNA MER1_type -700 1912 1777 237 273 27 55 chr12 66238448 66238631 -77547824 + L1MC5 LINE L1 7548 7725 -236 353 224 0 0 chr12 66238632 66238708 -77547747 + Tigger4(Zombi) DNA MER2_type 2 77 -2654 * 1414 117 48 8 chr12 66238705 66238953 -77547502 + Tigger4(Zombi) DNA MER2_type 2468 2725 -6 9836 196 69 29 chr12 66239261 66240970 -77545485 + L1MCa LINE L1 20 1658 -4768 2229 88 3 7 chr12 66240970 66241265 -77545190 + AluY SINE Alu 1 294 -17 9836 196 69 29 chr12 66241265 66243598 -77542857 + L1MCa LINE L1 1658 4225 -2201 235 262 99 16 chr12 66243597 66243811 -77542644 + L1M4c LINE L1 1333 1569 -4815 * 1181 221 51 41 chr12 66243891 66244060 -77542395 - L1M4 LINE L1 -5046 1496 1330 2319 88 0 19 chr12 66244060 66244377 -77542078 - AluY SINE Alu 0 311 1 1181 221 51 41 chr12 66244377 66244618 -77541837 - L1M4 LINE L1 -5212 1330 1082 427 217 43 43 chr12 66244644 66244782 -77541673 + L1MB7 LINE L1 6036 6173 -11 345 229 16 41 chr12 66244809 66244931 -77541524 + L1MC5 LINE L1 7795 7913 -48 30 0 0 0 chr12 66246653 66246683 -77539772 + AT_rich Low_complexity Low_complexity 1 30 0 738 254 132 5 chr12 66248829 66249042 -77537413 - MIR SINE MIR -8 254 15 1366 192 30 54 chr12 66249167 66249322 -77537133 + MLT1A1 LTR MaLR 6 163 -202 2248 120 0 0 chr12 66249322 66249623 -77536832 + AluY SINE Alu 1 301 -10 1366 192 30 54 chr12 66249623 66249836 -77536619 + MLT1A1 LTR MaLR 163 365 0 2136 119 7 3 chr12 66250541 66250835 -77535620 + AluSq SINE Alu 1 295 -18 769 193 21 48 chr12 66251349 66251400 -77535055 + MER5A DNA MER1_type 1 52 -137 2344 164 29 2 chr12 66251400 66251815 -77534640 + MSTB LTR MaLR 1 426 0 769 193 21 48 chr12 66251815 66251950 -77534505 + MER5A DNA MER1_type 52 182 -7 246 326 77 66 chr12 66252254 66252450 -77534005 + L2 LINE L2 3075 3272 0 822 312 202 46 chr12 66252636 66253201 -77533254 + L2 LINE L2 189 665 -2649 1856 121 133 9 chr12 66253201 66253532 -77532923 - THE1C LTR MaLR 0 375 4 822 312 202 46 chr12 66253532 66253979 -77532476 + L2 LINE L2 665 1041 -2273 2008 147 39 18 chr12 66253979 66254361 -77532094 + MLT1B LTR MaLR 1 390 0 822 312 202 46 chr12 66254361 66255053 -77531402 + L2 LINE L2 1041 2160 -1154 191 366 54 32 chr12 66255135 66255356 -77531099 + L2 LINE L2 2835 3060 -212 201 281 85 37 chr12 66255450 66255532 -77530923 + L2 LINE L2 3210 3295 -18 3303 98 11 2 chr12 66255826 66256304 -77530151 + LTR3b LTR ERVK 1 482 -18 418 56 0 0 chr12 66256305 66256359 -77530096 + LTR3b LTR ERVK 447 500 0 1753 160 0 29 chr12 66256618 66256925 -77529530 + AluJo SINE Alu 1 298 -14 484 257 49 44 chr12 66257676 66257859 -77528596 + MIR SINE MIR 31 214 -48 1672 155 55 11 chr12 66257893 66258222 -77528233 + AluSx SINE Alu 1 341 0 457 258 7 0 chr12 66258729 66258746 -77527709 - L1MA10 LINE L1 0 6334 6318 377 242 42 36 chr12 66258746 66258911 -77527544 - L1ME1 LINE L1 -9 6157 5992 1227 203 38 4 chr12 66258912 66259178 -77527277 - L1ME1 LINE L1 -479 5687 5413 278 348 25 63 chr12 66259609 66259767 -77526688 + MIR3 SINE MIR 45 196 -12 521 248 168 45 chr12 66260161 66260471 -77525984 - L2 LINE L2 0 3313 2966 2515 74 0 0 chr12 66262128 66262437 -77524018 + AluY SINE Alu 1 309 -2 507 247 49 37 chr12 66262448 66262610 -77523845 + MIR SINE MIR 32 195 -67 2305 103 0 0 chr12 66262615 66262917 -77523538 + AluSc SINE Alu 1 302 -7 1229 240 118 45 chr12 66263031 66263181 -77523274 + L2 LINE L2 2530 2668 -645 2472 53 0 10 chr12 66263181 66263481 -77522974 - AluY SINE Alu -13 298 2 1229 240 118 45 chr12 66263481 66264067 -77522388 + L2 LINE L2 2668 3313 0 258 221 29 48 chr12 66264887 66264991 -77521464 + MER103 DNA DNA 46 147 -19 571 274 30 7 chr12 66265041 66265176 -77521279 - L2 LINE L2 -1 3271 3134 181 345 112 44 chr12 66265559 66265758 -77520697 + L2 LINE L2 3033 3245 -27 690 289 64 17 chr12 66265758 66265993 -77520462 + MIR SINE MIR 2 247 -15 1593 159 177 61 chr12 66266648 66267139 -77519316 - LTR10A LTR ERV1 -61 548 1 234 0 0 0 chr12 66267746 66267772 -77518683 + (CAG)n Simple_repeat Simple_repeat 2 27 0 437 219 43 85 chr12 66268723 66268817 -77517638 - MIR3 SINE MIR -3 205 119 2093 129 0 10 chr12 66268817 66269112 -77517343 + AluSg SINE Alu 7 298 -12 437 219 43 85 chr12 66269112 66269181 -77517274 - MIR3 SINE MIR -89 119 49 213 349 0 0 chr12 66269244 66269310 -77517145 - L2 LINE L2 -2 3270 3205 331 366 65 0 chr12 66269575 66269698 -77516757 - L2 LINE L2 -5 3267 3137 496 221 41 0 chr12 66269792 66269914 -77516541 + MER96 DNA MER1_type? 42 168 -7 413 226 73 29 chr12 66269989 66270103 -77516352 + MIR3 SINE MIR 68 189 -19 1736 170 48 17 chr12 66270284 66270573 -77515882 + AluJb SINE Alu 1 298 -14 2622 118 3 0 chr12 66270849 66271223 -77515232 + THE1C LTR MaLR 1 375 0 2217 117 0 16 chr12 66271587 66271894 -77514561 + AluSx SINE Alu 1 302 -10 523 249 89 18 chr12 66272208 66272377 -77514078 - MIR SINE MIR -51 211 31 2286 112 0 0 chr12 66272492 66272786 -77513669 + AluSg SINE Alu 1 294 -16 204 91 0 30 chr12 66272790 66272823 -77513632 + L2 LINE L2 3191 3222 -50 2208 109 0 7 chr12 66273186 66273489 -77512966 - AluSq SINE Alu -12 301 1 540 147 78 47 chr12 66273504 66273633 -77512822 - FLAM_C SINE Alu 0 133 1 1008 241 71 53 chr12 66274711 66275160 -77511295 - LTR37B LTR ERV1 -3 465 9 194 91 68 0 chr12 66276343 66276387 -77510068 + A-rich Low_complexity Low_complexity 5 51 0 2688 190 26 86 chr12 66276963 66277005 -77509450 + L1M1 LINE L1 17 60 -7505 2119 130 7 3 chr12 66277005 66277312 -77509143 + AluSx SINE Alu 1 308 -4 2688 190 26 86 chr12 66277312 66277970 -77508485 + L1M1 LINE L1 60 675 -6890 230 139 0 0 chr12 66278126 66278162 -77508293 + L1M1 LINE L1 17 52 -7513 1021 93 0 0 chr12 66278168 66278297 -77508158 + AluSq/x SINE Alu 1 129 -184 400 202 79 0 chr12 66278297 66278386 -77508069 + L1M1 LINE L1 272 367 -7198 * 5271 183 14 2 chr12 66278371 66279334 -77507121 + L1M1 LINE L1 882 1855 -5710 1149 117 157 9 chr12 66279334 66279564 -77506891 + MER21A LTR ERV1 1 264 -667 2841 147 35 53 chr12 66279569 66280135 -77506320 + MER21A LTR ERV1 376 931 0 2954 129 110 0 chr12 66280137 66280665 -77505790 + L1M1 LINE L1 1853 2438 -5127 2786 168 36 11 chr12 66280664 66281706 -77504749 + L1M1 LINE L1 3114 4168 -3397 * 2097 120 7 0 chr12 66281706 66281998 -77504457 - AluSx SINE Alu -18 294 1 212 217 43 0 chr12 66282472 66282518 -77503937 - MIR3 SINE MIR -52 156 109 1867 143 0 20 chr12 66283062 66283362 -77503093 + AluSx SINE Alu 1 294 -18 1897 155 10 0 chr12 66283603 66283893 -77502562 + AluSx SINE Alu 5 297 -15 2283 88 10 7 chr12 66284975 66285280 -77501175 + AluSx SINE Alu 1 306 -6 713 231 162 45 chr12 66285311 66285644 -77500811 + L1MC4a LINE L1 7194 7565 -243 304 76 379 0 chr12 66285644 66285710 -77500745 + L1MD3 LINE L1 7835 7925 -70 182 365 83 10 chr12 66285892 66285988 -77500467 + L2 LINE L2 3180 3282 -31 2331 181 34 2 chr12 66287281 66287724 -77498731 + LTR32 LTR ERVL 15 471 0 365 291 87 36 chr12 66287875 66288071 -77498384 + MIR SINE MIR 45 250 -12 953 221 51 51 chr12 66289141 66289376 -77497079 - MIR SINE MIR -26 236 2 289 361 31 15 chr12 66289388 66289518 -77496937 - MIR SINE MIR -128 134 3 558 250 83 24 chr12 66289536 66289704 -77496751 + MIR SINE MIR 83 260 -2 188 189 19 75 chr12 66290716 66290769 -77495686 - L2 LINE L2 -93 3220 3171 284 342 54 0 chr12 66290994 66291105 -77495350 - L2 LINE L2 -2 3270 3154 1669 189 0 50 chr12 66291194 66291517 -77494938 - AluJb SINE Alu -5 307 1 247 266 47 0 chr12 66291712 66291776 -77494679 + MIR3 SINE MIR 114 180 -28 22 0 0 0 chr12 66292232 66292254 -77494201 + AT_rich Low_complexity Low_complexity 1 22 0 204 297 153 18 chr12 66292394 66292505 -77493950 - L2 LINE L2 -3 3310 3185 431 318 23 8 chr12 66293837 66293966 -77492489 + L2 LINE L2 3138 3268 -4 536 243 97 0 chr12 66294691 66294835 -77491620 + MIR SINE MIR 15 172 -90 216 184 0 0 chr12 66295170 66295208 -77491247 + (ATG)n Simple_repeat Simple_repeat 1 38 0 358 169 45 56 chr12 66295219 66295308 -77491147 + MIR SINE MIR 61 148 -114 380 143 14 0 chr12 66297083 66297153 -77489302 + GA-rich Low_complexity Low_complexity 1 71 0 181 326 53 32 chr12 66298022 66298117 -77488338 - L2 LINE L2 0 3272 3176 2102 179 10 20 chr12 66299201 66299598 -77486857 + MSTD LTR MaLR 4 396 0 502 303 159 10 chr12 66299712 66299930 -77486525 + MIR SINE MIR 1 249 -13 2214 145 60 24 chr12 66301273 66301906 -77484549 - MER39 LTR ERV1 0 707 1 247 367 72 22 chr12 66302415 66302554 -77483901 + MIR SINE MIR 1 146 -116 270 176 82 2 chr12 66302795 66302882 -77483573 - L1ME LINE L1 -523 5639 5546 240 212 0 0 chr12 66303006 66303072 -77483383 + (CACG)n Simple_repeat Simple_repeat 1 66 0 2068 97 120 20 chr12 66304319 66304660 -77481795 - THE1C LTR MaLR 0 375 1 2661 105 34 27 chr12 66304660 66304739 -77481716 - THE1C-int LTR MaLR 0 1580 1503 1858 142 49 3 chr12 66304739 66305027 -77481428 - AluSx SINE Alu -11 301 1 2661 105 34 27 chr12 66305027 66305386 -77481069 - THE1C-int LTR MaLR -77 1503 1139 302 283 0 0 chr12 66305394 66305507 -77480948 - L1M4 LINE L1 -2632 3514 3402 20087 43 16 1 chr12 66305641 66308940 -77477515 - L1PA5 LINE L1 -5 6149 2809 2052 228 56 13 chr12 66308969 66309575 -77476880 + L1ME2 LINE L1 5531 6162 -2 26 0 0 0 chr12 66309728 66309754 -77476701 + AT_rich Low_complexity Low_complexity 1 26 0 718 259 73 84 chr12 66309958 66310341 -77476114 + MLT1J2 LTR MaLR 53 431 -19 259 89 22 0 chr12 66310575 66310620 -77475835 - MADE1 DNA Mariner 0 80 35 24 35 0 53 chr12 66310638 66310695 -77475760 + AT_rich Low_complexity Low_complexity 1 54 0 649 227 78 0 chr12 66310714 66310868 -77475587 + MLT1F1 LTR MaLR 140 305 -262 720 249 58 10 chr12 66310890 66311095 -77475360 - MIR SINE MIR -33 229 15 325 221 58 128 chr12 66311364 66311536 -77474919 - L2 LINE L2 -1 3312 3153 948 258 95 50 chr12 66312596 66312976 -77473479 + L2 LINE L2 2917 3313 0 248 225 146 22 chr12 66313340 66313429 -77473026 + MIR SINE MIR 93 192 -70 387 359 42 12 chr12 66314343 66314510 -77471945 + L2 LINE L2 2897 3068 -245 345 229 74 16 chr12 66314528 66314650 -77471805 - MLT1L LTR MaLR -19 596 468 539 267 60 47 chr12 66314678 66314910 -77471545 - MLT1L LTR MaLR -204 411 177 346 263 25 0 chr12 66315090 66315170 -77471285 + L2 LINE L2 3150 3231 -41 1510 205 117 14 chr12 66315177 66315612 -77470843 - MER45B DNA AcHobo -5 1035 556 2231 238 8 10 chr12 66315639 66316123 -77470332 - MER45B DNA AcHobo -557 483 1 2141 204 25 72 chr12 66316436 66317038 -77469417 - MLT2B3 LTR ERVL -1 519 1 447 288 118 0 chr12 66317570 66317723 -77468732 + MIR SINE MIR 78 248 -14 21 0 0 0 chr12 66318220 66318241 -77468214 + AT_rich Low_complexity Low_complexity 1 21 0 1550 288 140 62 chr12 66318683 66320021 -77466434 + L2 LINE L2 1762 3206 -107 1448 151 177 26 chr12 66320021 66320365 -77466090 + MSTD LTR MaLR 1 396 0 1550 288 140 62 chr12 66320365 66320449 -77466006 + L2 LINE L2 3206 3282 -31 417 20 0 0 chr12 66320475 66320525 -77465930 + (CA)n Simple_repeat Simple_repeat 2 51 0 1332 180 144 0 chr12 66321471 66321727 -77464728 - AluJb SINE Alu -19 293 1 1586 71 5 19 chr12 66321731 66321942 -77464513 - AluSg/x SINE Alu -3 309 102 192 85 17 68 chr12 66322368 66322427 -77464028 + (TTATA)n Simple_repeat Simple_repeat 4 59 0 2005 124 0 4 chr12 66323109 66323383 -77463072 + AluSx SINE Alu 1 273 -39 1112 227 28 3 chr12 66323399 66323685 -77462770 - L1MC3 LINE L1 0 7785 7493 3927 167 43 15 chr12 66323786 66323906 -77462549 - L1MC3 LINE L1 -161 7624 7509 1744 166 26 29 chr12 66323906 66324213 -77462242 - AluSq SINE Alu -7 306 1 3927 167 43 15 chr12 66324213 66324955 -77461500 - L1MC3 LINE L1 -276 7509 6738 2485 69 0 13 chr12 66325458 66325764 -77460691 + AluY SINE Alu 1 302 -9 621 254 67 19 chr12 66326605 66326814 -77459641 - MIR SINE MIR -43 219 1 633 286 100 0 chr12 66326897 66327128 -77459327 - MIR SINE MIR -1 261 8 373 317 70 41 chr12 66327703 66327946 -77458509 + MIR SINE MIR 13 262 0 184 310 155 17 chr12 66327937 66328053 -77458402 - MIR SINE MIR -106 156 25 * 184 390 37 15 chr12 66328108 66328244 -77458211 + MIR SINE MIR 3 141 -121 2437 124 22 0 chr12 66328750 66329106 -77457349 + THE1B LTR MaLR 1 364 0 228 159 68 0 chr12 66329896 66329940 -77456515 + MIR SINE MIR 118 164 -98 21 0 0 0 chr12 66330462 66330483 -77455972 + AT_rich Low_complexity Low_complexity 1 21 0 1536 168 3 23 chr12 66331848 66332151 -77454304 - L1MB2 LINE L1 -2 6169 5873 471 324 37 0 chr12 66332195 66332467 -77453988 - L1MB2 LINE L1 -328 5793 5512 472 211 157 34 chr12 66333725 66333929 -77452526 + MER106A DNA MER1_type 1 229 -7 188 261 196 11 chr12 66334247 66334339 -77452116 - MIR SINE MIR -13 249 141 2285 71 3 7 chr12 66334917 66335199 -77451256 + AluSg SINE Alu 1 304 0 208 0 0 0 chr12 66335199 66335222 -77451233 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 434 294 124 10 chr12 66336786 66336980 -77449475 + MIR SINE MIR 35 250 -12 356 221 122 30 chr12 66337409 66337540 -77448915 + MIR SINE MIR 6 148 -114 376 208 0 0 chr12 66337546 66337623 -77448832 - MER116 DNA Mariner -2 78 2 336 292 38 10 chr12 66337753 66337962 -77448493 + L1ME4a LINE L1 5786 6000 -121 29 28 0 0 chr12 66337981 66338017 -77448438 + AT_rich Low_complexity Low_complexity 1 36 0 1869 152 45 20 chr12 66338374 66338730 -77447725 - MLT1A1 LTR MaLR 0 365 1 192 331 62 62 chr12 66339070 66339230 -77447225 - MIR SINE MIR -80 182 23 2076 126 3 0 chr12 66339328 66339621 -77446834 + AluSx SINE Alu 1 294 -18 276 291 51 51 chr12 66341529 66341646 -77444809 - L2 LINE L2 -1 3271 3155 448 323 67 17 chr12 66343069 66343342 -77443113 + L2 LINE L2 2790 3083 -189 1250 301 106 20 chr12 66343490 66344320 -77442135 - L2 LINE L2 -32 3281 2368 246 206 95 0 chr12 66344423 66344486 -77441969 + MIR SINE MIR 121 189 -73 263 366 73 0 chr12 66344538 66344661 -77441794 + L2 LINE L2 3116 3247 -25 22 0 0 0 chr12 66344851 66344873 -77441582 + AT_rich Low_complexity Low_complexity 1 22 0 2288 92 30 3 chr12 66344890 66345195 -77441260 - AluSq SINE Alu 0 313 1 306 298 106 47 chr12 66345855 66346090 -77440365 + MIR SINE MIR 2 250 -12 318 244 89 0 chr12 66348014 66348104 -77438351 - L1MC4 LINE L1 -1179 6863 6766 907 265 46 8 chr12 66348111 66348349 -77438106 - MIR SINE MIR -5 257 11 1008 265 40 19 chr12 66348483 66348857 -77437598 - HsTC2c DNA Tc2 -3 726 345 1404 160 4 9 chr12 66348859 66349084 -77437371 + AluJb SINE Alu 74 297 -15 436 292 17 6 chr12 66349100 66349278 -77437177 - HsTC2c DNA Tc2 -400 329 150 427 264 94 13 chr12 66350550 66350709 -77435746 - MIR SINE MIR -9 253 82 1654 214 46 44 chr12 66350812 66351289 -77435166 - MLT1F LTR MaLR -54 488 11 493 265 124 65 chr12 66351289 66351465 -77434990 + L2 LINE L2 2826 3029 -284 1542 99 40 5 chr12 66351465 66351687 -77434768 - MER30 DNA MER1_type 0 230 1 493 265 124 65 chr12 66351687 66351816 -77434639 + L2 LINE L2 3029 3149 -164 699 121 107 141 chr12 66351894 66352100 -77434355 - L1PA15 LINE L1 -13 6152 5954 370 187 40 0 chr12 66352127 66352202 -77434253 + L2 LINE L2 3236 3313 0 219 200 15 31 chr12 66353355 66353420 -77433035 + GA-rich Low_complexity Low_complexity 3 66 0 2073 158 13 37 chr12 66353809 66354183 -77432272 + MLT1A1 LTR MaLR 1 365 0 1036 292 70 58 chr12 66355472 66356089 -77430366 + MER45C DNA AcHobo 2 625 -328 216 330 57 28 chr12 66356794 66356900 -77429555 - MIR SINE MIR -151 111 3 2105 161 47 0 chr12 66357694 66358080 -77428375 - LTR57 LTR ERVL 0 411 8 533 253 51 6 chr12 66358083 66358241 -77428214 + MIR SINE MIR 72 236 -26 21 0 0 0 chr12 66358635 66358656 -77427799 + AT_rich Low_complexity Low_complexity 1 21 0 280 200 0 0 chr12 66359078 66359128 -77427327 + Tigger2 DNA MER2_type 1 50 -2668 1351 129 0 67 chr12 66359130 66359355 -77427100 - AluJo SINE Alu -18 294 85 2442 119 65 0 chr12 66359379 66359791 -77426664 + Tigger2 DNA MER2_type 2280 2718 0 683 253 21 46 chr12 66359864 66360058 -77426397 - MIR SINE MIR -2 260 72 359 298 25 0 chr12 66360714 66360835 -77425620 + MER117 DNA MER1_type 73 196 -1 24 0 0 0 chr12 66361825 66361849 -77424606 + AT_rich Low_complexity Low_complexity 1 24 0 432 222 150 8 chr12 66361965 66362290 -77424165 - MLT1G1 LTR MaLR 0 590 232 246 226 71 12 chr12 66362339 66362423 -77424032 - L1M4 LINE L1 -3427 2719 2631 542 280 76 34 chr12 66362437 66362673 -77423782 - MLT1G1 LTR MaLR -347 248 3 1818 156 42 0 chr12 66362688 66362971 -77423484 - AluSg SINE Alu -15 295 1 182 326 38 91 chr12 66363163 66363273 -77423182 + MIR SINE MIR 22 125 -83 2685 70 28 11 chr12 66363273 66363631 -77422824 - THE1B LTR MaLR 0 364 1 182 326 38 91 chr12 66363631 66363652 -77422803 + MIR SINE MIR 125 146 -62 316 238 205 33 chr12 66363665 66363816 -77422639 - MER5B DNA MER1_type -1 177 1 374 292 181 28 chr12 66363857 66364001 -77422454 - MER5B DNA MER1_type -7 171 6 1050 181 22 0 chr12 66364018 66364200 -77422255 - MER5A DNA MER1_type -3 186 1 206 250 0 0 chr12 66364350 66364394 -77422061 - MER5A DNA MER1_type -114 75 32 344 331 53 0 chr12 66365002 66365135 -77421320 - MER5B DNA MER1_type -38 140 1 1033 184 4 73 chr12 66365547 66365781 -77420674 - MER20 DNA MER1_type -1 218 1 238 234 156 0 chr12 66365958 66366022 -77420433 - MER81 DNA DNA -5 109 36 367 334 135 10 chr12 66366095 66366325 -77420130 - MIR SINE MIR -6 256 1 2308 112 0 0 chr12 66367189 66367502 -77418953 + AluSp SINE Alu 1 313 0 643 282 52 5 chr12 66367945 66368158 -77418297 + L3 LINE CR1 1231 1453 -124 570 264 8 0 chr12 66368182 66368303 -77418152 - L2 LINE L2 -1 3312 3191 1509 206 29 29 chr12 66368306 66368425 -77418030 - MER58B DNA MER1_type -2080 340 222 989 236 9 18 chr12 66368425 66368650 -77417805 + MER58A DNA MER1_type 1 223 -1 1509 206 29 29 chr12 66368650 66368870 -77417585 - MER58B DNA MER1_type -2197 223 1 472 301 113 9 chr12 66369856 66370191 -77416264 + L2 LINE L2 1034 1403 -1911 4646 182 24 19 chr12 66370212 66371216 -77415239 - L1MC3 LINE L1 -936 6849 5841 354 294 11 0 chr12 66371426 66371518 -77414937 + L2 LINE L2 3217 3309 -4 1569 52 0 5 chr12 66371903 66372115 -77414340 - L1P LINE L1 -2150 3996 3786 7617 26 1 0 chr12 66372115 66373196 -77413259 + L1PA4 LINE L1 5071 6152 -3 2097 97 0 0 chr12 66373569 66373837 -77412618 - AluSg SINE Alu -9 301 34 212 188 0 21 chr12 66374008 66374056 -77412399 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 31 0 0 0 chr12 66375205 66375236 -77411219 + AT_rich Low_complexity Low_complexity 1 31 0 26 104 0 0 chr12 66375628 66375724 -77410731 + AT_rich Low_complexity Low_complexity 1 96 0 206 275 53 6 chr12 66375805 66375976 -77410479 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 23 33 0 0 chr12 66375983 66376013 -77410442 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 66376212 66376233 -77410222 + AT_rich Low_complexity Low_complexity 1 21 0 947 217 110 48 chr12 66376682 66377149 -77409306 + MER39 LTR ERV1 9 707 0 817 200 25 133 chr12 66377703 66378063 -77408392 + LTR37A LTR ERV1 95 415 -11 2537 160 46 2 chr12 66378525 66378963 -77407492 - MSTB2 LTR MaLR 0 457 1 20702 79 2 5 chr12 66379277 66382185 -77404270 - L1P LINE L1 -3237 2909 11 28 0 0 0 chr12 66383325 66383353 -77403102 + AT_rich Low_complexity Low_complexity 1 28 0 1189 276 58 11 chr12 66384969 66385350 -77401105 - MLT1I LTR MaLR 0 409 11 862 260 119 44 chr12 66386133 66386518 -77399937 - MLT1J2 LTR MaLR 0 450 37 636 316 108 23 chr12 66386799 66387269 -77399186 - MLT1K LTR MaLR 0 588 35 7826 46 0 3 chr12 66387565 66388672 -77397783 - L1PA5 LINE L1 -2 6152 5045 2757 112 0 8 chr12 66388848 66389224 -77397231 + THE1C LTR MaLR 1 373 -2 8684 103 122 54 chr12 66389226 66389739 -77396716 + THE1C-int LTR MaLR 1 478 -1102 2269 118 0 3 chr12 66389739 66390052 -77396403 + AluSx SINE Alu 1 312 0 8684 103 122 54 chr12 66390052 66391018 -77395437 + THE1C-int LTR MaLR 478 1580 0 2296 130 12 6 chr12 66391018 66391357 -77395098 + THE1C LTR MaLR 1 341 -34 1733 97 0 0 chr12 66393369 66393586 -77392869 + AluSc SINE Alu 76 292 -17 434 253 46 46 chr12 66394053 66394227 -77392228 - MIR SINE MIR -46 216 43 371 233 0 110 chr12 66397531 66397677 -77388778 + MER5A DNA MER1_type 60 189 0 252 0 0 0 chr12 66397721 66397749 -77388706 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 261 0 0 0 chr12 66397748 66397777 -77388678 + (CA)n Simple_repeat Simple_repeat 1 29 0 500 45 15 0 chr12 66401253 66401320 -77385135 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 421 247 113 20 chr12 66402109 66402259 -77384196 - MER103 DNA DNA 0 166 3 1741 138 58 7 chr12 66402316 66402715 -77383740 + LTR19A LTR ERV1 1 465 -21 569 45 0 0 chr12 66402714 66402781 -77383674 + MER4A LTR ERV1 291 357 -307 * 2189 139 28 5 chr12 66402753 66403123 -77383332 + MER4A LTR ERV1 176 664 0 225 232 0 18 chr12 66403201 66403257 -77383198 + (TAA)n Simple_repeat Simple_repeat 2 56 0 345 228 13 0 chr12 66403498 66403577 -77382878 - LTR58 LTR ERV1 -250 429 350 376 282 136 52 chr12 66403751 66403964 -77382491 - MIR SINE MIR -11 251 21 369 0 0 0 chr12 66404303 66404344 -77382111 + (CA)n Simple_repeat Simple_repeat 2 42 0 240 86 0 0 chr12 66404344 66404379 -77382076 + (GA)n Simple_repeat Simple_repeat 1 35 0 459 0 0 0 chr12 66404650 66404701 -77381754 + (CA)n Simple_repeat Simple_repeat 2 52 0 1950 143 7 3 chr12 66405525 66405811 -77380644 - AluJb SINE Alu -25 287 1 22 0 0 0 chr12 66406811 66406833 -77379622 + AT_rich Low_complexity Low_complexity 1 22 0 2082 129 0 0 chr12 66406845 66407139 -77379316 + AluSx SINE Alu 1 294 -18 426 257 100 63 chr12 66407222 66407553 -77378902 - L1ME4a LINE L1 -177 5944 5602 1422 212 3 7 chr12 66407603 66407886 -77378569 - AluJo SINE Alu -30 282 1 526 296 64 15 chr12 66408232 66408435 -77378020 - MIR SINE MIR -30 232 20 325 275 83 11 chr12 66411322 66411477 -77374978 + MIR SINE MIR 37 200 -62 201 273 20 107 chr12 66411522 66411606 -77374849 - MIR SINE MIR -15 247 180 778 195 47 18 chr12 66411606 66411775 -77374680 - MER45A DNA AcHobo -4 174 1 201 273 20 107 chr12 66411775 66411840 -77374615 - MIR SINE MIR -82 180 111 272 303 110 13 chr12 66411942 66412097 -77374358 - MIR SINE MIR -7 255 86 255 289 144 16 chr12 66412316 66412510 -77373945 + L1ME LINE L1 5687 5905 -216 2488 144 10 13 chr12 66412580 66412963 -77373492 - MER47B DNA MER2_type 0 418 37 1272 184 154 54 chr12 66413060 66413391 -77373064 + MLT1A1 LTR MaLR 1 364 -1 1397 203 150 20 chr12 66413567 66413966 -77372489 + MER39 LTR ERV1 232 682 -25 2018 228 50 25 chr12 66414321 66414916 -77371539 - HsTC2 DNA Tc2 -3 1895 1286 1506 188 81 56 chr12 66414916 66415391 -77371064 + MER39 LTR ERV1 1 707 0 274 242 225 8 chr12 66415409 66415529 -77370926 - HsTC2 DNA Tc2 -1750 148 3 1674 130 27 15 chr12 66416572 66416833 -77369622 - AluJo SINE Alu -19 293 30 291 299 232 19 chr12 66417127 66417334 -77369121 - MIR SINE MIR 0 262 12 1966 144 20 3 chr12 66417845 66418150 -77368305 + AluJo SINE Alu 1 310 -2 279 278 93 37 chr12 66418509 66418617 -77367838 + L2 LINE L2 3200 3313 0 24 0 0 0 chr12 66418621 66418645 -77367810 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 66419163 66419184 -77367271 + AT_rich Low_complexity Low_complexity 1 21 0 2114 112 0 27 chr12 66419190 66419485 -77366970 + AluSx SINE Alu 2 288 -24 189 250 0 23 chr12 66420347 66420391 -77366064 - L3 LINE CR1 -7 1570 1528 2338 69 3 50 chr12 66420994 66421314 -77365141 + AluSp SINE Alu 1 305 -8 22 0 0 0 chr12 66421860 66421882 -77364573 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 66422987 66423009 -77363446 + AT_rich Low_complexity Low_complexity 1 22 0 2073 66 55 11 chr12 66423009 66423283 -77363172 - AluY SINE Alu -25 286 1 1968 146 0 7 chr12 66423286 66423580 -77362875 - AluSx SINE Alu -20 292 1 3539 153 65 13 chr12 66423682 66424302 -77362153 - MER21B LTR ERV1 -4 859 208 1140 190 33 0 chr12 66424446 66424630 -77361825 - MER21B LTR ERV1 -673 190 1 272 298 44 9 chr12 66425419 66425533 -77360922 + MER94 DNA DNA 16 133 -1 2865 88 64 40 chr12 66425598 66426052 -77360403 - MER4C LTR ERV1 0 465 1 223 274 119 0 chr12 66426550 66426634 -77359821 + L2 LINE L2 3220 3313 0 189 0 0 0 chr12 66426995 66427016 -77359439 + (CATTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr12 66427043 66427065 -77359390 + AT_rich Low_complexity Low_complexity 1 22 0 1099 197 236 12 chr12 66427305 66427559 -77358896 - 7SLRNA srpRNA srpRNA -9 311 1 2255 109 0 10 chr12 66427877 66428188 -77358267 - AluSg SINE Alu -2 308 1 2034 110 38 3 chr12 66428866 66429157 -77357298 - AluSg SINE Alu -9 301 1 234 89 36 18 chr12 66429838 66429894 -77356561 + A-rich Low_complexity Low_complexity 1 57 0 1959 78 6 118 chr12 66430121 66430452 -77356003 - AluSx SINE Alu -16 296 3 2782 207 3 26 chr12 66430915 66431524 -77354931 + L1 LINE L1 4808 5402 -744 741 207 94 5 chr12 66431534 66431747 -77354708 + L1M4 LINE L1 3949 4180 -1966 803 231 12 0 chr12 66431753 66431913 -77354542 + AluSg/x SINE Alu 129 290 -20 444 252 79 44 chr12 66431938 66432215 -77354240 - L1M4 LINE L1 -4833 1709 1495 2844 16 0 0 chr12 66432215 66432526 -77353929 - AluYa5 SINE Alu 0 311 1 444 252 79 44 chr12 66432526 66432565 -77353890 - L1M4 LINE L1 -5047 1495 1459 5811 121 49 12 chr12 66432588 66433552 -77352903 + L1MA9 LINE L1 5314 6312 0 556 267 75 96 chr12 66433884 66434021 -77352434 - L2 LINE L2 -5 3267 3129 2401 111 140 8 chr12 66434021 66434399 -77352056 + MSTA LTR MaLR 1 428 0 556 267 75 96 chr12 66434399 66434908 -77351547 - L2 LINE L2 -143 3129 2624 204 347 0 42 chr12 66435026 66435098 -77351357 + MIR SINE MIR 20 88 -120 1766 171 21 0 chr12 66435404 66435685 -77350770 - AluJb SINE Alu -25 287 1 595 242 121 9 chr12 66435692 66435915 -77350540 - MIR SINE MIR -8 254 7 251 210 65 0 chr12 66436233 66436295 -77350160 + L2 LINE L2 2992 3057 -215 1839 161 24 0 chr12 66436613 66436904 -77349551 - AluSx SINE Alu -14 298 1 200 351 67 22 chr12 66437409 66437543 -77348912 + L2 LINE L2 2925 3064 -208 291 294 94 12 chr12 66437590 66437675 -77348780 + L2 LINE L2 3214 3305 -8 412 240 144 0 chr12 66438270 66438395 -77348060 + MIR SINE MIR 7 149 -113 302 310 11 0 chr12 66438468 66438555 -77347900 - L2 LINE L2 -35 3278 3191 400 300 11 72 chr12 66438649 66438829 -77347626 + L1MD2 LINE L1 5975 6143 -23 2800 92 22 8 chr12 66439084 66439454 -77347001 + THE1C LTR MaLR 1 375 0 391 284 157 0 chr12 66439473 66439607 -77346848 - MIR SINE MIR -74 188 34 767 227 238 38 chr12 66441036 66441401 -77345054 + Charlie7 DNA MER1_type 288 725 -1887 234 338 0 0 chr12 66441401 66441472 -77344983 + MIR SINE MIR 192 262 0 34 65 0 0 chr12 66441506 66441568 -77344887 + AT_rich Low_complexity Low_complexity 1 62 0 1559 168 7 27 chr12 66441640 66441938 -77344517 - AluJo SINE Alu -20 292 1 826 112 30 22 chr12 66441938 66442072 -77344383 - AluJo SINE Alu -177 135 1 902 245 46 4 chr12 66443172 66443413 -77343042 - MIR SINE MIR 0 262 16 264 217 33 22 chr12 66443547 66443639 -77342816 + L1M4 LINE L1 2872 2964 -3182 316 210 319 0 chr12 66443724 66443843 -77342612 + MIR SINE MIR 8 164 -98 839 219 73 18 chr12 66443855 66444074 -77342381 + MER46B DNA MER2_type 1 106 -130 815 191 31 63 chr12 66494190 66494463 -77291992 + MLT2A2 LTR ERVL 273 453 0 2945 165 24 0 chr12 66494463 66495003 -77291452 + L1MB2 LINE L1 5580 6132 -39 572 40 13 0 chr12 66495003 66495078 -77291377 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 1833 130 3 85 chr12 66495147 66495478 -77290977 + AluSx SINE Alu 1 304 -8 284 211 54 54 chr12 66495557 66495723 -77290732 + L1M4 LINE L1 5112 5277 -869 866 71 14 7 chr12 66495723 66495863 -77290592 + L1P LINE L1 3 143 -6003 204 40 0 0 chr12 66496128 66496153 -77290302 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 361 234 113 4 chr12 66496593 66496740 -77289715 - MIR SINE MIR -62 146 3 1559 94 0 13 chr12 66497534 66497767 -77288688 + THE1C LTR MaLR 144 373 -2 8026 103 122 54 chr12 66497769 66498282 -77288173 + THE1C-int LTR MaLR 1 478 -1102 2281 118 0 3 chr12 66498282 66498595 -77287860 + AluSx SINE Alu 1 312 0 8026 103 122 54 chr12 66498595 66499561 -77286894 + THE1C-int LTR MaLR 478 1580 0 2494 126 11 5 chr12 66499561 66499934 -77286521 + THE1C LTR MaLR 1 375 0 643 275 108 31 chr12 66500255 66500579 -77285876 + MLT1G LTR MaLR 28 376 -214 289 167 97 70 chr12 66500605 66500719 -77285736 + MLT1G LTR MaLR 395 511 -19 1824 99 52 151 chr12 66500732 66501136 -77285319 + THE1B LTR MaLR 1 364 0 11160 102 25 1 chr12 66501136 66502680 -77283775 + THE1B-int LTR MaLR 1 1580 0 2034 131 32 67 chr12 66502682 66503057 -77283398 + THE1B LTR MaLR 3 364 0 32 81 0 0 chr12 66503594 66503668 -77282787 + AT_rich Low_complexity Low_complexity 1 74 0 218 310 52 69 chr12 66504298 66504414 -77282041 + MIR3 SINE MIR 86 199 -9 416 307 58 60 chr12 66504816 66505197 -77281258 - L2 LINE L2 -374 2940 2561 270 336 50 43 chr12 66505306 66505446 -77281009 - MIR3 SINE MIR -22 186 46 5390 112 7 8 chr12 66505952 66507644 -77278811 - L1PA15 LINE L1 -13 6152 4480 185 347 67 0 chr12 66508189 66508264 -77278191 + MIR SINE MIR 35 114 -148 5269 155 12 25 chr12 66508814 66509851 -77276604 - L1MA7 LINE L1 -5 6286 5264 265 119 0 0 chr12 66509874 66509916 -77276539 - L1MA7 LINE L1 -1063 5083 5042 * 4121 186 88 78 chr12 66509914 66511011 -77275444 - L1 LINE L1 -1299 4847 3777 222 37 0 0 chr12 66511011 66511038 -77275417 + (TG)n Simple_repeat Simple_repeat 2 28 0 4121 186 88 78 chr12 66511038 66511984 -77274471 - L1 LINE L1 -2369 3777 2842 14286 34 7 0 chr12 66511984 66514476 -77271979 + L1PA4 LINE L1 3659 6155 0 355 200 0 0 chr12 66516214 66516274 -77270181 + MER5B DNA MER1_type 3 62 -116 239 139 0 0 chr12 66516268 66516304 -77270151 - MER5B DNA MER1_type -139 39 4 * 1911 116 0 66 chr12 66516463 66516782 -77269673 - AluSx SINE Alu -14 298 1 2057 149 3 0 chr12 66517439 66517747 -77268708 + AluSx SINE Alu 1 309 -3 317 340 45 8 chr12 66518039 66518283 -77268172 + HAL1 LINE L1 1394 1646 -861 29097 121 21 21 chr12 66518590 66524712 -77261743 + L1PA6 LINE L1 12 6135 -19 180 0 0 0 chr12 66524712 66524732 -77261723 + (TA)n Simple_repeat Simple_repeat 1 20 0 2963 63 8 0 chr12 66524732 66525115 -77261340 + L1PA7 LINE L1 5769 6154 0 304 257 114 46 chr12 66525431 66525606 -77260849 + L1M4 LINE L1 2425 2611 -3535 301 249 68 53 chr12 66525715 66525980 -77260475 + L1M4 LINE L1 2750 3018 -3128 233 139 0 0 chr12 66525985 66526028 -77260427 + L1M4 LINE L1 3205 3247 -2899 342 344 70 5 chr12 66526395 66526581 -77259874 + L1ME LINE L1 4616 4813 -1333 1160 140 0 11 chr12 66526582 66526761 -77259694 - AluSg/x SINE Alu -2 310 134 2332 96 0 7 chr12 66526761 66527064 -77259391 - AluY SINE Alu -9 302 2 410 327 98 36 chr12 66527066 66527402 -77259053 + L1ME LINE L1 4802 5158 -988 525 327 69 5 chr12 66527493 66527872 -77258583 + L1ME LINE L1 5258 5660 -502 367 150 200 10 chr12 66528422 66528522 -77257933 - LTR67 LTR ERVL -11 546 428 404 302 188 5 chr12 66531096 66531298 -77255157 + MIR SINE MIR 24 262 0 301 334 251 25 chr12 66532074 66532310 -77254145 + L3 LINE CR1 712 894 -683 1624 189 85 48 chr12 66532310 66532791 -77253664 + MLT1D LTR MaLR 3 501 -4 301 334 251 25 chr12 66532791 66533069 -77253386 + L3 LINE CR1 894 1342 -235 262 243 47 75 chr12 66533072 66533179 -77253276 + L2 LINE L2 3158 3261 -52 947 275 68 31 chr12 66533284 66533728 -77252727 - MLT1J LTR MaLR -45 466 7 26 50 0 0 chr12 66534006 66534046 -77252409 + AT_rich Low_complexity Low_complexity 1 40 0 1849 131 75 34 chr12 66534242 66534600 -77251855 - THE1C LTR MaLR 0 375 3 878 241 79 34 chr12 66534800 66535091 -77251364 + L2 LINE L2 2504 2807 -507 2114 192 43 41 chr12 66535092 66535623 -77250832 - MLT1F LTR MaLR 0 542 11 493 265 124 65 chr12 66535623 66535799 -77250656 + L2 LINE L2 2826 3029 -284 1542 99 40 5 chr12 66535799 66536021 -77250434 - MER30 DNA MER1_type 0 230 1 493 265 124 65 chr12 66536021 66536150 -77250305 + L2 LINE L2 3029 3149 -164 699 121 107 141 chr12 66536228 66536434 -77250021 - L1PA15 LINE L1 -13 6152 5954 370 187 40 0 chr12 66536461 66536536 -77249919 + L2 LINE L2 3236 3313 0 2076 158 13 37 chr12 66536896 66537270 -77249185 + MLT1A1 LTR MaLR 1 365 0 288 322 91 8 chr12 66538985 66539106 -77247349 + MIR SINE MIR 45 175 -87 211 309 62 52 chr12 66539454 66539551 -77246904 + MIR SINE MIR 20 117 -145 2568 59 0 0 chr12 66539895 66540199 -77246256 - AluY SINE Alu -7 304 1 219 200 15 31 chr12 66541783 66541848 -77244607 + GA-rich Low_complexity Low_complexity 3 66 0 670 241 191 38 chr12 66543058 66543507 -77242948 - L1ME4a LINE L1 -2 6119 5602 1964 146 0 3 chr12 66543662 66543957 -77242498 + AluSx SINE Alu 1 294 -18 570 340 9 47 chr12 66544593 66544825 -77241630 + MIR SINE MIR 15 237 -25 22 0 0 0 chr12 66546398 66546420 -77240035 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr12 66546474 66546531 -77239924 + AT_rich Low_complexity Low_complexity 1 57 0 190 312 56 40 chr12 66547190 66547315 -77239140 + MER5B DNA MER1_type 42 168 -10 188 276 92 26 chr12 66547910 66547986 -77238469 + MER5A DNA MER1_type 87 167 -22 297 0 0 0 chr12 66548238 66548271 -77238184 + (CA)n Simple_repeat Simple_repeat 2 34 0 272 312 50 30 chr12 66548622 66548824 -77237631 + HAL1b LINE L1 77 282 -1066 343 324 87 9 chr12 66548876 66549095 -77237360 + L1ME1 LINE L1 2289 2524 -3622 240 239 15 0 chr12 66549282 66549349 -77237106 + T-rich Low_complexity Low_complexity 6 73 0 202 116 47 0 chr12 66549911 66549954 -77236501 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2667 31 0 22 chr12 66550005 66550323 -77236132 + AluY SINE Alu 1 311 0 1048 109 63 0 chr12 66551890 66552065 -77234390 - L1MA9 LINE L1 -6 6306 6121 528 189 32 0 chr12 66552315 66552410 -77234045 + MER3 DNA MER1_type 27 124 -85 264 226 36 0 chr12 66552418 66552502 -77233953 + L1ME1 LINE L1 4408 4494 -1652 * 2715 205 30 30 chr12 66552475 66552562 -77233893 + L1ME1 LINE L1 5178 5263 -903 2014 117 7 11 chr12 66552562 66552877 -77233578 + AluSx SINE Alu 3 316 0 2715 205 30 30 chr12 66552877 66553486 -77232969 + L1ME1 LINE L1 5263 5870 -296 28 48 0 0 chr12 66554492 66554534 -77231921 + AT_rich Low_complexity Low_complexity 1 42 0 4883 111 6 3 chr12 66554953 66555677 -77230778 + L1PA15 LINE L1 5440 6165 0 1882 132 0 24 chr12 66556397 66556750 -77229705 - AluJb SINE Alu 0 346 1 202 239 0 0 chr12 66557128 66557174 -77229281 + T-rich Low_complexity Low_complexity 1 46 0 336 338 121 17 chr12 66557178 66557524 -77228931 + L2 LINE L2 2377 2758 -556 2110 117 0 0 chr12 66557548 66557856 -77228599 - AluSx SINE Alu 0 308 1 1963 117 6 22 chr12 66557908 66558258 -77228197 - MER4A LTR ERV1 -1 663 261 696 92 10 10 chr12 66558258 66558356 -77228099 - MER4A LTR ERV1 -566 98 1 248 321 111 6 chr12 66558546 66558708 -77227747 + L2 LINE L2 3123 3301 -12 207 291 139 0 chr12 66559019 66559098 -77227357 - MIR3 SINE MIR -22 186 97 263 56 0 0 chr12 66559100 66559136 -77227319 - L1MA9 LINE L1 0 6312 6277 314 269 16 0 chr12 66559138 66559211 -77227244 - MIR SINE MIR -107 101 34 21 0 0 0 chr12 66559422 66559443 -77227012 + AT_rich Low_complexity Low_complexity 1 21 0 816 156 8 0 chr12 66559830 66559958 -77226497 - FLAM_C SINE Alu -4 129 1 25 51 0 0 chr12 66560230 66560269 -77226186 + AT_rich Low_complexity Low_complexity 1 39 0 2101 278 145 28 chr12 66560469 66561531 -77224924 + L2 LINE L2 2118 3312 -1 704 255 239 22 chr12 66562130 66562444 -77224011 + L2 LINE L2 65 446 -2868 3038 249 115 13 chr12 66562450 66563544 -77222911 - L1M4c LINE L1 -3973 2411 1174 257 0 30 0 chr12 66563544 66563577 -77222878 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3038 249 115 13 chr12 66563577 66563722 -77222733 - L1M4c LINE L1 -5210 1174 1045 1460 236 38 2 chr12 66564040 66564472 -77221983 + L1ME1 LINE L1 5728 6178 0 27755 62 5 0 chr12 66564584 66568139 -77218316 + L1P LINE L1 22 3592 -2554 4418 103 8 5 chr12 66568263 66568932 -77217523 - L1P LINE L1 -2371 3775 3105 8875 153 99 88 chr12 66568934 66571197 -77215258 - L1P LINE L1 -3846 2300 12 262 229 0 29 chr12 66573157 66573227 -77213228 - MIR SINE MIR -95 167 100 33 56 0 0 chr12 66573614 66573668 -77212787 + AT_rich Low_complexity Low_complexity 1 54 0 2448 239 68 33 chr12 66573876 66573952 -77212503 - L1ME2 LINE L1 -68 6167 6095 2516 82 14 16 chr12 66573952 66574317 -77212138 + L1PA11 LINE L1 5801 6164 -10 2448 239 68 33 chr12 66574317 66574996 -77211459 - L1ME2 LINE L1 -140 6095 5375 270 0 0 0 chr12 66574996 66575026 -77211429 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2448 239 68 33 chr12 66575026 66575557 -77210898 - L1ME2 LINE L1 -860 5375 4864 1789 255 80 54 chr12 66575577 66577075 -77209380 - L1ME2 LINE L1 -3261 2954 1477 442 367 19 5 chr12 66577099 66577309 -77209146 - L1ME2 LINE L1 -6017 379 167 18626 126 4 4 chr12 66577738 66580675 -77205780 + L1PA7 LINE L1 1294 4232 -1914 6858 58 11 1 chr12 66580675 66582315 -77204140 + L1PA7 LINE L1 4508 6154 0 22 35 0 0 chr12 66582437 66582466 -77203989 + AT_rich Low_complexity Low_complexity 1 29 0 273 119 0 0 chr12 66582801 66582843 -77203612 + (TC)n Simple_repeat Simple_repeat 1 42 0 202 347 0 0 chr12 66584292 66584367 -77202088 + L2 LINE L2 249 323 -2991 978 220 78 58 chr12 66584417 66584806 -77201649 - MLT2C2 LTR ERVL 0 464 68 1121 143 11 0 chr12 66584814 66584996 -77201459 - ERVL-C2 LTR ERVL -2 5762 5579 3037 145 0 5 chr12 66585006 66585455 -77201000 - ERVL-C2 LTR ERVL -977 4787 4341 244 362 85 23 chr12 66585681 66585858 -77200597 + L2 LINE L2 2664 2851 -463 414 329 58 86 chr12 66585922 66586235 -77200220 + L2 LINE L2 2933 3236 -36 4217 135 57 10 chr12 66586544 66587234 -77199221 - MER72 LTR ERV1 0 722 1 1544 188 72 15 chr12 66587346 66587739 -77198716 + LTR47A LTR ERVL 1 449 -3 582 254 127 0 chr12 66587741 66587914 -77198541 + L1ME3A LINE L1 5957 6151 -19 769 290 71 35 chr12 66587937 66588444 -77198011 + L1ME3A LINE L1 5423 5947 -223 843 171 0 0 chr12 66588857 66589003 -77197452 - FRAM SINE Alu -20 156 11 916 83 0 127 chr12 66589228 66589409 -77197046 + MER51B LTR ERV1 1 158 -219 * 1836 139 7 0 chr12 66589381 66589682 -77196773 + MER51B LTR ERV1 75 377 0 266 211 0 0 chr12 66590190 66590242 -77196213 - MER112 DNA MER1_type -110 150 99 425 19 19 0 chr12 66590242 66590296 -77196159 + (TG)n Simple_repeat Simple_repeat 2 56 0 2019 138 0 10 chr12 66590556 66590854 -77195601 - AluSx SINE Alu -17 295 1 195 42 0 0 chr12 66590902 66590926 -77195529 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 311 316 53 9 chr12 66591486 66591600 -77194855 + MIR3 SINE MIR 78 196 -12 344 281 133 58 chr12 66592326 66592727 -77193728 + L1MC4a LINE L1 5291 5747 -2061 195 100 0 0 chr12 66592727 66592757 -77193698 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 344 281 133 58 chr12 66592757 66592910 -77193545 + L1MC4a LINE L1 5747 5887 -1921 195 153 0 51 chr12 66593143 66593202 -77193253 + GA-rich Low_complexity Low_complexity 5 60 0 462 286 95 75 chr12 66593317 66593459 -77192996 + MIR SINE MIR 3 154 -108 1887 112 27 24 chr12 66593459 66593755 -77192700 + AluY SINE Alu 1 297 -14 462 286 95 75 chr12 66593755 66593864 -77192591 + MIR SINE MIR 154 259 -3 262 356 147 5 chr12 66594192 66594383 -77192072 + MIR SINE MIR 45 262 0 23 0 0 0 chr12 66594418 66594441 -77192014 + AT_rich Low_complexity Low_complexity 1 23 0 197 367 0 44 chr12 66594496 66594586 -77191869 + MIR SINE MIR 25 110 -98 957 176 34 102 chr12 66595300 66595595 -77190860 - MLT1A1 LTR MaLR -11 354 80 358 177 152 0 chr12 66596111 66596190 -77190265 - MLT1A1 LTR MaLR -274 91 1 4356 54 9 2 chr12 66596540 66597097 -77189358 - L1PA7 LINE L1 -2 6152 5592 323 275 75 50 chr12 66597098 66597258 -77189197 + L1ME LINE L1 5609 5772 -398 1069 143 6 11 chr12 66597260 66597592 -77188863 + HERVL18 LTR ERVL 1419 1810 -4237 1268 114 302 8 chr12 66597594 66597849 -77188606 + HERVL18 LTR ERVL 2123 2452 -3595 * 5198 140 4 14 chr12 66597848 66598564 -77187891 + HERVL18 LTR ERVL 2720 3427 -2620 3998 91 14 69 chr12 66598564 66599205 -77187250 - LTR14B LTR ERVK 0 608 3 5198 140 4 14 chr12 66599205 66599331 -77187124 + HERVL18 LTR ERVL 3427 3553 -2494 1012 191 33 0 chr12 66599324 66599507 -77186948 + HERVL18 LTR ERVL 4264 4452 -1595 * 762 213 0 19 chr12 66599487 66599642 -77186813 + HERVL18 LTR ERVL 5116 5267 -780 * 497 226 0 0 chr12 66599642 66599744 -77186711 + HERVL18 LTR ERVL 5946 6047 0 1409 201 201 27 chr12 66600310 66600833 -77185622 + LTR18B LTR ERVL 1 614 0 272 330 0 0 chr12 66602732 66602829 -77183626 - HERVR LTR ERV1 -3216 4176 4080 1295 278 48 11 chr12 66603841 66604280 -77182175 - HERVR LTR ERV1 -4064 583 129 228 176 20 0 chr12 66604978 66605029 -77181426 + T-rich Low_complexity Low_complexity 1 52 0 290 204 86 32 chr12 66605798 66605891 -77180564 - LTR26E LTR ERV1 -37 585 488 407 209 64 120 chr12 66605909 66606143 -77180312 - LTR8A LTR ERV1 -217 510 290 2455 161 24 0 chr12 66606189 66606606 -77179849 - MSTA LTR MaLR 0 428 2 310 254 61 18 chr12 66606744 66606858 -77179597 - LTR8 LTR ERV1 -572 119 1 2022 152 128 8 chr12 66607003 66607385 -77179070 - MSTA LTR MaLR 0 428 1 2141 213 27 31 chr12 66607707 66608508 -77177947 - MER4D-int LTR ERV1 -5911 847 10 1719 188 14 20 chr12 66608516 66608873 -77177582 - MER4D LTR ERV1 -2 901 547 687 165 0 65 chr12 66608875 66609060 -77177395 - MER4E LTR ERV1 -592 280 1 1101 112 61 0 chr12 66609060 66609256 -77177199 + LTR54 LTR ERV1 303 510 0 625 217 12 124 chr12 66609256 66609513 -77176942 + MER39 LTR ERV1 455 682 -25 591 159 61 8 chr12 66609520 66609652 -77176803 + MER34C LTR ERV1 447 585 0 797 167 19 25 chr12 66610264 66610426 -77176029 - MER4B-int LTR ERV1 -6591 167 7 205 161 0 0 chr12 66611446 66611477 -77174978 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 275 85 16 chr12 66611533 66611722 -77174733 - L1M4 LINE L1 -2685 3461 3260 6556 139 12 12 chr12 66611734 66613898 -77172557 - L1MA2 LINE L1 0 6304 4138 885 263 56 11 chr12 66613896 66614341 -77172114 - L1M4 LINE L1 -2877 3269 2805 * 3056 114 68 12 chr12 66614398 66614916 -77171539 + LTR10A LTR ERV1 1 547 -62 1081 232 28 14 chr12 66614926 66615211 -77171244 + LTR10A-int LTR ERV1 1 289 -6360 2181 118 72 10 chr12 66615355 66615744 -77170711 + LTR10A-int LTR ERV1 609 1021 -5628 * 4179 93 9 3 chr12 66615727 66616359 -77170096 + LTR10A-int LTR ERV1 1233 1868 -4781 573 128 0 0 chr12 66616402 66616504 -77169951 + (GA)n Simple_repeat Simple_repeat 2 103 0 268 191 79 0 chr12 66616505 66616594 -77169861 + LTR10A-int LTR ERV1 1849 1944 -4705 * 2871 180 16 6 chr12 66616582 66617294 -77169161 + LTR10A-int LTR ERV1 2202 2686 -3963 1959 197 30 40 chr12 66617274 66617953 -77168502 + LTR10A-int LTR ERV1 956 4119 -3666 * 1369 164 67 0 chr12 66618301 66618570 -77167885 - MER34C LTR ERV1 -3 582 296 278 293 116 23 chr12 66618571 66618786 -77167669 + LTR10A LTR ERV1 1 235 -374 1695 135 66 50 chr12 66618788 66619150 -77167305 + LTR10A LTR ERV1 181 548 -61 1637 114 12 0 chr12 66619167 66619422 -77167033 - MER34C LTR ERV1 -291 294 37 1507 209 65 61 chr12 66619727 66620242 -77166213 - LTR55 LTR ERV -5 543 24 1842 169 87 6 chr12 66620242 66620608 -77165847 - MSTD LTR MaLR 0 396 1 1507 209 65 61 chr12 66620608 66620633 -77165822 - LTR55 LTR ERV -524 24 1 377 320 27 14 chr12 66620801 66620948 -77165507 + MIR SINE MIR 83 231 -31 571 242 47 42 chr12 66621702 66621892 -77164563 - L2 LINE L2 0 3313 3123 947 312 39 68 chr12 66624171 66625029 -77161426 - L2 LINE L2 -31 3282 2449 2112 152 25 3 chr12 66625641 66625997 -77160458 - THE1B LTR MaLR 0 364 1 9409 104 37 53 chr12 66625997 66626687 -77159768 - THE1B-int LTR MaLR 0 1580 880 2679 89 0 8 chr12 66626687 66627045 -77159410 + THE1A LTR MaLR 1 355 0 9409 104 37 53 chr12 66627045 66627960 -77158495 - THE1B-int LTR MaLR -700 880 1 2391 148 3 3 chr12 66627960 66628324 -77158131 - THE1B LTR MaLR 0 364 1 278 216 284 0 chr12 66629799 66629901 -77156554 - MIR SINE MIR -83 179 49 247 253 32 84 chr12 66629965 66630060 -77156395 + MIR SINE MIR 17 106 -156 39 38 0 0 chr12 66630670 66630723 -77155732 + AT_rich Low_complexity Low_complexity 1 53 0 398 214 188 0 chr12 66630726 66630843 -77155612 - MIR SINE MIR -53 209 71 22 0 0 0 chr12 66630976 66630998 -77155457 + AT_rich Low_complexity Low_complexity 1 22 0 2076 122 3 0 chr12 66631023 66631310 -77155145 + AluSx SINE Alu 9 296 -16 180 0 0 0 chr12 66631310 66631330 -77155125 + (TA)n Simple_repeat Simple_repeat 2 21 0 256 164 30 0 chr12 66631366 66631433 -77155022 + (TA)n Simple_repeat Simple_repeat 2 70 0 254 287 171 24 chr12 66631641 66632129 -77154326 + L1MC/D LINE L1 5284 5823 -719 2590 130 84 27 chr12 66633012 66633488 -77152967 + Tigger1 DNA MER2_type 26 528 -1890 608 161 0 140 chr12 66633492 66633635 -77152820 + FLAM_C SINE Alu 1 123 -20 16907 69 5 0 chr12 66633637 66635945 -77150510 + L1P LINE L1 10 2327 -3819 8939 35 3 3 chr12 66635942 66637107 -77149348 + L1P LINE L1 4179 5343 -803 * 14160 34 2 0 chr12 66637224 66640471 -77145984 + L1PA4 LINE L1 2902 6155 0 484 283 120 16 chr12 66642143 66642334 -77144121 - MIR SINE MIR -37 225 15 315 0 0 0 chr12 66642821 66642856 -77143599 + (TG)n Simple_repeat Simple_repeat 1 35 0 1727 177 3 7 chr12 66642867 66643150 -77143305 - AluJb SINE Alu -30 282 1 23 33 0 0 chr12 66643200 66643230 -77143225 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr12 66643459 66643490 -77142965 + AT_rich Low_complexity Low_complexity 1 31 0 1865 113 78 7 chr12 66645159 66645443 -77141012 - AluSx SINE Alu -8 304 1 3057 263 104 75 chr12 66646674 66647011 -77139444 + L2 LINE L2 383 709 -2605 1883 132 3 10 chr12 66647011 66647299 -77139156 - AluSx SINE Alu -24 288 3 3057 263 104 75 chr12 66647299 66647511 -77138944 + L2 LINE L2 709 913 -2401 2112 78 0 0 chr12 66647511 66647779 -77138676 - AluY SINE Alu 0 311 44 3057 263 104 75 chr12 66647779 66648625 -77137830 + L2 LINE L2 913 1825 -1489 1967 116 7 20 chr12 66648625 66648926 -77137529 - AluSx SINE Alu -4 308 12 3057 263 104 75 chr12 66648926 66648990 -77137465 + L2 LINE L2 1825 1886 -1428 4290 171 21 72 chr12 66648991 66649950 -77136505 + L1MB3 LINE L1 4901 5790 -393 2001 148 3 3 chr12 66649950 66650255 -77136200 + AluSq SINE Alu 1 305 -8 4290 171 21 72 chr12 66650255 66650629 -77135826 + L1MB3 LINE L1 5790 6181 -2 1565 255 120 72 chr12 66650645 66651989 -77134466 + L2 LINE L2 1880 3307 -6 267 240 260 19 chr12 66652379 66652483 -77133972 - L2 LINE L2 -3 3310 3182 942 224 9 47 chr12 66653120 66653352 -77133103 + MER58A DNA MER1_type 2 224 0 215 352 23 23 chr12 66653562 66653650 -77132805 + MIR3 SINE MIR 10 97 -111 216 263 0 0 chr12 66653860 66653917 -77132538 + MIR SINE MIR 172 228 -34 281 146 0 0 chr12 66654764 66654805 -77131650 + Alu SINE Alu 246 286 -16 339 25 0 0 chr12 66654805 66654845 -77131610 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 21 36 0 0 chr12 66655119 66655147 -77131308 + AT_rich Low_complexity Low_complexity 1 28 0 345 82 0 0 chr12 66655155 66655204 -77131251 + LTR5 LTR ERVK 73 121 -848 1100 260 41 101 chr12 66655280 66655911 -77130544 - MER77 LTR ERV1 -6 599 53 1153 94 198 0 chr12 66655994 66656186 -77130269 - MER30 DNA MER1_type 0 230 1 3118 236 62 38 chr12 66656946 66657176 -77129279 + L1MEc LINE L1 2132 2355 -3860 2007 158 0 0 chr12 66657176 66657479 -77128976 + AluSx SINE Alu 1 303 -9 3118 236 62 38 chr12 66657479 66658593 -77127862 + L1MEc LINE L1 2355 3463 -2752 6821 206 57 14 chr12 66658594 66658669 -77127786 - L1M4c LINE L1 -2008 3962 3892 3305 126 56 2 chr12 66658669 66659169 -77127286 + MER1A DNA MER1_type 1 527 0 6821 206 57 14 chr12 66659169 66660861 -77125594 - L1M4c LINE L1 -2078 3892 2118 1251 267 89 6 chr12 66660881 66661335 -77125120 - L1M4c LINE L1 -4516 1375 921 1697 312 24 14 chr12 66661451 66662085 -77124370 - L1M4c LINE L1 -5199 692 11 7219 50 12 0 chr12 66662999 66664069 -77122386 - L1PA5 LINE L1 -5 6149 5076 7488 44 14 0 chr12 66664069 66665003 -77121452 + L1PA5 LINE L1 4126 5072 -1074 181 261 33 65 chr12 66665842 66665934 -77120521 - L2 LINE L2 -667 2647 2559 252 349 0 0 chr12 66665974 66666083 -77120372 + (TGG)n Simple_repeat Simple_repeat 3 111 0 351 259 29 69 chr12 66666783 66666957 -77119498 - L1ME LINE L1 -500 5621 5455 2305 104 0 0 chr12 66667368 66667675 -77118780 - AluSp SINE Alu -6 307 1 2251 125 23 6 chr12 66668094 66668447 -77118008 + MER6 DNA MER2_type 247 865 0 473 331 24 12 chr12 66668685 66668851 -77117604 - MER5A DNA MER1_type -19 170 3 345 289 103 33 chr12 66668900 66669173 -77117282 - L1ME LINE L1 -1217 4929 4638 227 310 0 0 chr12 66669179 66669237 -77117218 + CT-rich Low_complexity Low_complexity 2 59 0 227 283 69 66 chr12 66669398 66669765 -77116690 - L1ME LINE L1 -1530 4616 4249 275 245 58 75 chr12 66669913 66670154 -77116301 - L1ME LINE L1 -2180 3966 3730 30 0 0 0 chr12 66670511 66670541 -77115914 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chr12 66671802 66671845 -77114610 + (TG)n Simple_repeat Simple_repeat 2 44 0 1553 252 83 35 chr12 66672144 66672659 -77113796 - MLT1F LTR MaLR 0 542 3 23 0 0 0 chr12 66672875 66672898 -77113557 + AT_rich Low_complexity Low_complexity 1 23 0 1492 293 40 49 chr12 66673068 66673908 -77112547 + L1ME LINE L1 424 1256 -4863 221 233 0 35 chr12 66673955 66674041 -77112414 + A-rich Low_complexity Low_complexity 4 86 0 290 262 93 9 chr12 66674066 66674173 -77112282 + L1ME LINE L1 2153 2268 -3861 820 151 0 36 chr12 66674173 66674312 -77112143 + AluJo SINE Alu 1 134 -178 228 196 11 43 chr12 66674443 66674535 -77111920 + GA-rich Low_complexity Low_complexity 4 92 0 656 145 29 7 chr12 66674650 66674788 -77111667 + MER53 DNA DNA 15 155 -34 998 292 97 39 chr12 66674953 66676181 -77110274 + L1ME LINE L1 2621 3919 -2210 344 329 160 29 chr12 66676185 66676535 -77109920 + L1ME LINE L1 3992 4387 -1742 910 295 67 10 chr12 66676608 66677113 -77109342 + L1ME LINE L1 4487 5020 -1109 609 82 10 41 chr12 66677113 66677211 -77109244 + AluSp/q SINE Alu 200 294 -19 478 245 36 56 chr12 66677403 66677904 -77108551 + L1ME LINE L1 5127 5685 -468 288 287 139 0 chr12 66678498 66678627 -77107828 - MIR SINE MIR -6 256 110 207 114 0 0 chr12 66678628 66678663 -77107792 + (GA)n Simple_repeat Simple_repeat 2 36 0 210 232 116 14 chr12 66678678 66678747 -77107708 - MIR SINE MIR -167 95 20 2193 183 82 56 chr12 66679369 66679906 -77106549 + MLT2B3 LTR ERVL 4 554 0 361 287 73 47 chr12 66680019 66680169 -77106286 - MIR SINE MIR -89 173 20 533 346 50 39 chr12 66681400 66681764 -77104691 + MER90 LTR ERV1 246 613 -1 2737 194 18 18 chr12 66681826 66682379 -77104076 - LTR38 LTR ERV1 0 556 4 227 369 25 16 chr12 66682759 66682881 -77103574 + LTR33A LTR ERVL 53 175 -348 306 198 13 69 chr12 66683058 66683185 -77103270 + LTR33A LTR ERVL 440 519 -4 1261 149 40 5 chr12 66683202 66683424 -77103031 - L1PA16 LINE L1 -122 6044 5815 231 200 0 62 chr12 66683586 66683651 -77102804 + LTR33A LTR ERVL 442 502 -21 2938 137 38 38 chr12 66683819 66684432 -77102023 - L1PA16 LINE L1 -221 5945 5333 1044 233 78 3 chr12 66684436 66684780 -77101675 + Charlie2 DNA MER1_type 2476 2845 -17 694 123 0 85 chr12 66685585 66685715 -77100740 - FLAM_A SINE Alu -14 119 1 1965 108 131 12 chr12 66685716 66686051 -77100404 + THE1C LTR MaLR 1 375 0 629 293 38 34 chr12 66686696 66686935 -77099520 + MIR SINE MIR 21 260 -2 2008 107 7 11 chr12 66687927 66688208 -77098247 - AluSx SINE Alu -3 309 30 282 308 103 79 chr12 66689771 66690226 -77096229 - L2 LINE L2 0 3313 2848 1623 211 72 63 chr12 66690965 66691371 -77095084 - L1MC5 LINE L1 -99 7862 7444 328 20 20 20 chr12 66691371 66691421 -77095034 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1623 211 72 63 chr12 66691421 66691793 -77094662 - L1MC5 LINE L1 -517 7444 7077 238 293 9 0 chr12 66691827 66691933 -77094522 - L1MC4a LINE L1 -1291 6517 6411 231 36 0 0 chr12 66692666 66692694 -77093761 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 195 360 23 35 chr12 66693074 66693160 -77093295 - MIR SINE MIR -158 104 20 559 170 26 17 chr12 66693270 66693522 -77092933 + L1MA4A LINE L1 5984 6296 -4 192 77 0 0 chr12 66693663 66693689 -77092766 + (A)n Simple_repeat Simple_repeat 1 26 0 978 326 92 9 chr12 66694875 66695311 -77091144 - L2 LINE L2 -547 2767 2296 802 279 131 35 chr12 66695336 66695787 -77090668 + L2 LINE L2 2819 3312 -1 196 320 0 67 chr12 66695993 66696068 -77090387 - MIR SINE MIR -99 109 40 489 112 0 34 chr12 66696956 66697045 -77089410 + LTR45B LTR ERV1 297 382 -107 741 206 127 40 chr12 66697845 66698073 -77088382 + MIR SINE MIR 14 261 -1 21 0 0 0 chr12 66698918 66698939 -77087516 + AT_rich Low_complexity Low_complexity 1 21 0 1641 170 21 35 chr12 66698992 66699281 -77087174 + AluJo SINE Alu 1 285 -27 2315 80 16 25 chr12 66700330 66700644 -77085811 - AluY SINE Alu 0 311 1 265 289 70 35 chr12 66701007 66701121 -77085334 + MIR SINE MIR 31 148 -60 260 254 18 0 chr12 66701591 66701646 -77084809 - L2 LINE L2 -12 3260 3205 1640 166 45 6 chr12 66701764 66702096 -77084359 + L1MA9 LINE L1 5963 6307 -5 235 256 35 12 chr12 66703844 66703930 -77082525 - Charlie4 DNA MER1_type -5 1956 1869 1707 229 163 53 chr12 66704432 66705351 -77081104 - LTR28 LTR ERV1 0 1020 1 22565 128 14 8 chr12 66705352 66708842 -77077613 - LTR28-int LTR ERV1 -1 7090 3581 13385 179 64 85 chr12 66709103 66712744 -77073711 - LTR28-int LTR ERV1 -3518 3573 7 2154 225 59 45 chr12 66712748 66713678 -77072777 - LTR28 LTR ERV1 0 1020 1 2432 142 20 0 chr12 66714795 66715190 -77071265 + MER57A LTR ERV1 1 403 0 242 245 0 0 chr12 66715228 66715277 -77071178 - MIR SINE MIR -92 170 122 1674 188 12 6 chr12 66715282 66715618 -77070837 + MER2 DNA MER2_type 1 338 -7 4361 211 57 11 chr12 66715672 66716666 -77069789 + MER45B DNA AcHobo 1 1040 0 815 183 156 0 chr12 66716737 66716917 -77069538 - MER3 DNA MER1_type -1 208 1 388 259 72 0 chr12 66716926 66717065 -77069390 + MER103 DNA DNA 11 159 -7 231 269 77 10 chr12 66717264 66717368 -77069087 - L1M4 LINE L1 -966 5180 5070 1225 252 79 18 chr12 66717400 66717729 -77068726 + LTR40a LTR ERVL 1 349 -170 945 256 62 9 chr12 66717729 66718065 -77068390 + L1ME1 LINE L1 5757 6110 -56 273 235 0 24 chr12 66718086 66718171 -77068284 - MER63 DNA MER1_type -140 920 838 316 185 0 31 chr12 66718178 66718243 -77068212 + MER21B LTR ERV1 1 63 -800 591 260 128 20 chr12 66718369 66718565 -77067890 + MER21B LTR ERV1 249 465 -398 1625 182 0 4 chr12 66718565 66718845 -77067610 + MER1B DNA MER1_type 1 279 -60 882 231 0 0 chr12 66718853 66719026 -77067429 - FRAM SINE Alu -4 172 1 840 269 101 14 chr12 66719026 66719383 -77067072 + MER21B LTR ERV1 461 848 -15 520 228 0 94 chr12 66719388 66719559 -77066896 - MER63 DNA MER1_type -230 830 676 832 195 125 7 chr12 66719732 66720004 -77066451 + LTR37A LTR ERV1 123 426 0 235 252 139 26 chr12 66721486 66721601 -77064854 + MIR SINE MIR 52 179 -83 360 0 0 0 chr12 66722482 66722522 -77063933 + (T)n Simple_repeat Simple_repeat 1 40 0 21 95 0 0 chr12 66722791 66722854 -77063601 + AT_rich Low_complexity Low_complexity 1 63 0 745 176 23 0 chr12 66723084 66723215 -77063240 + AluJo SINE Alu 1 134 -178 23785 139 15 20 chr12 66724811 66731203 -77055252 + L1PA8A LINE L1 8 6418 -28 34568 93 13 9 chr12 66731376 66737495 -77048960 + L1PA6 LINE L1 11 6150 -4 305 279 12 12 chr12 66737629 66737715 -77048740 - MIR3 SINE MIR -2 206 121 22 56 0 0 chr12 66737963 66737999 -77048456 + AT_rich Low_complexity Low_complexity 1 36 0 451 49 0 0 chr12 66738062 66738123 -77048332 - L1P LINE L1 -977 5169 5109 489 271 33 0 chr12 66738123 66738245 -77048210 - MER5B DNA MER1_type -10 168 43 273 132 88 15 chr12 66738336 66738404 -77048051 - L1M4 LINE L1 -3130 3016 2944 21 36 0 0 chr12 66738603 66738631 -77047824 + AT_rich Low_complexity Low_complexity 1 28 0 357 259 42 21 chr12 66739846 66739864 -77046591 - L1MA10 LINE L1 -14 6320 6303 737 246 65 63 chr12 66739864 66740246 -77046209 - L1ME2 LINE L1 -24 6209 5827 2174 124 140 8 chr12 66740247 66740625 -77045830 - MSTA LTR MaLR 0 428 1 447 234 171 36 chr12 66740664 66740886 -77045569 - L1ME2 LINE L1 -489 5744 5493 896 235 73 57 chr12 66740888 66741326 -77045129 - L1ME2 LINE L1 -755 5460 5016 1872 172 0 10 chr12 66741333 66741635 -77044820 - AluSx SINE Alu -13 299 1 286 333 14 21 chr12 66741641 66741782 -77044673 - L1M4b LINE L1 -5427 1432 1293 362 288 131 5 chr12 66742161 66742352 -77044103 - L1ME2 LINE L1 -6028 368 154 2157 174 56 7 chr12 66742401 66742814 -77043641 + MLT1C LTR MaLR 3 435 -32 1765 128 52 13 chr12 66742814 66743161 -77043294 - Tigger7 DNA MER2_type 0 2587 1 445 266 55 21 chr12 66743375 66743526 -77042929 - MER5B DNA MER1_type -28 161 7 2839 182 0 53 chr12 66743575 66744125 -77042330 + MLT2B3 LTR ERVL 32 552 -2 1367 190 79 0 chr12 66744125 66744415 -77042040 + LTR53 LTR ERVL 207 519 0 318 228 137 179 chr12 66744416 66744745 -77041710 - L2 LINE L2 -737 2577 2263 655 241 52 114 chr12 66746325 66746868 -77039587 - L1MC4a LINE L1 0 6121 5610 2121 112 3 35 chr12 66747710 66748023 -77038432 + AluSg1 SINE Alu 1 303 -6 216 0 0 0 chr12 66748023 66748047 -77038408 + (TA)n Simple_repeat Simple_repeat 2 25 0 887 297 18 0 chr12 66748272 66748501 -77037954 - MIR SINE MIR -29 233 1 445 54 0 5 chr12 66748940 66749003 -77037452 - L1PA4 LINE L1 -266 5865 5805 1733 33 0 5 chr12 66749003 66749217 -77037238 + L1PA5 LINE L1 5930 6142 -12 225 0 0 0 chr12 66749222 66749247 -77037208 + (TA)n Simple_repeat Simple_repeat 1 25 0 545 245 7 36 chr12 66749425 66749564 -77036891 + MIR SINE MIR 32 166 -96 689 265 26 56 chr12 66749607 66749841 -77036614 - MIR SINE MIR -32 230 4 21 0 0 0 chr12 66750724 66750745 -77035710 + AT_rich Low_complexity Low_complexity 1 21 0 194 324 59 0 chr12 66750938 66751006 -77035449 - L3b LINE CR1 0 1583 1512 214 362 81 35 chr12 66751254 66751428 -77035027 + L2 LINE L2 3083 3264 -8 198 103 0 0 chr12 66751436 66751465 -77034990 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1740 161 45 14 chr12 66751923 66752209 -77034246 + AluJb SINE Alu 7 301 -11 388 226 286 0 chr12 66752361 66752494 -77033961 + MIR SINE MIR 52 222 -40 396 322 8 0 chr12 66752616 66752737 -77033718 + MARNA DNA Mariner 89 210 -376 866 208 113 12 chr12 66753216 66753456 -77032999 + L1ME1 LINE L1 5899 6162 -4 213 367 102 8 chr12 66753897 66754025 -77032430 - L2 LINE L2 -227 3045 2906 293 100 20 0 chr12 66754492 66754542 -77031913 + (TCTCCC)n Simple_repeat Simple_repeat 6 56 0 22 35 0 0 chr12 66755642 66755671 -77030784 + AT_rich Low_complexity Low_complexity 1 29 0 1184 124 5 26 chr12 66756245 66756438 -77030017 - L1PA16 LINE L1 -4 6162 5974 9376 189 20 15 chr12 66756876 66757180 -77029275 - L1PA16 LINE L1 -189 5977 5676 308 43 22 0 chr12 66757180 66757226 -77029229 + (TG)n Simple_repeat Simple_repeat 2 48 0 9376 189 20 15 chr12 66757226 66759802 -77026653 - L1PA16 LINE L1 -490 5676 3087 296 301 26 9 chr12 66759872 66759985 -77026470 + HERV16 LTR ERVL 358 472 -4524 1195 207 0 38 chr12 66760000 66760237 -77026218 - MLT1-int LTR MaLR -169 1202 975 237 341 87 36 chr12 66760349 66760487 -77025968 + LTR16A LTR ERVL 56 200 -250 2058 125 3 3 chr12 66760542 66760838 -77025617 - AluSc SINE Alu -13 296 1 25903 114 6 5 chr12 66760882 66765742 -77020713 - L1PA8 LINE L1 -11 6161 1294 442 367 19 5 chr12 66766171 66766381 -77020074 + L1ME2 LINE L1 167 379 -6017 1793 254 80 53 chr12 66766405 66767902 -77018553 + L1ME2 LINE L1 1477 2954 -3261 2448 239 68 33 chr12 66767922 66768453 -77018002 + L1ME2 LINE L1 4864 5375 -860 270 0 0 0 chr12 66768453 66768483 -77017972 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2448 239 68 33 chr12 66768483 66769162 -77017293 + L1ME2 LINE L1 5375 6095 -140 2516 82 14 16 chr12 66769162 66769527 -77016928 - L1PA11 LINE L1 -10 6164 5801 2448 239 68 33 chr12 66769527 66769603 -77016852 + L1ME2 LINE L1 6095 6167 -68 33 56 0 0 chr12 66769811 66769865 -77016590 + AT_rich Low_complexity Low_complexity 1 54 0 262 229 0 29 chr12 66770252 66770322 -77016133 + MIR SINE MIR 100 167 -95 3053 124 40 15 chr12 66772282 66772756 -77013699 + L1P3 LINE L1 10 495 -5966 * 3196 138 76 6 chr12 66772730 66773280 -77013175 + L1P3 LINE L1 855 1443 -5018 273 119 0 0 chr12 66773778 66773820 -77012635 + (GA)n Simple_repeat Simple_repeat 1 42 0 22 35 0 0 chr12 66774154 66774183 -77012272 + AT_rich Low_complexity Low_complexity 1 29 0 6805 62 5 2 chr12 66774305 66775945 -77010510 - L1PA7 LINE L1 0 6154 4508 3950 98 2 4 chr12 66775945 66776507 -77009948 - L1PA7 LINE L1 -1914 4232 3672 3772 154 16 4 chr12 66776507 66777203 -77009252 - L1 LINE L1 -1305 4841 4138 989 263 56 11 chr12 66777201 66777646 -77008809 - L1 LINE L1 -2877 3269 2805 * 3244 114 68 12 chr12 66777703 66778221 -77008234 + LTR10A LTR ERV1 1 547 -62 1167 221 32 18 chr12 66778231 66778516 -77007939 + LTR10A-int LTR ERV1 1 289 -6360 2365 115 69 10 chr12 66778661 66779051 -77007404 + LTR10A-int LTR ERV1 609 1021 -5628 * 4389 93 9 3 chr12 66779034 66779666 -77006789 + LTR10A-int LTR ERV1 1233 1868 -4781 573 128 0 0 chr12 66779709 66779811 -77006644 + (GA)n Simple_repeat Simple_repeat 2 103 0 288 191 79 0 chr12 66779812 66779901 -77006554 + LTR10A-int LTR ERV1 1849 1944 -4705 * 2960 189 14 6 chr12 66779889 66780602 -77005853 + LTR10A-int LTR ERV1 2202 2692 -3957 2228 195 28 36 chr12 66780582 66781259 -77005196 + LTR10A-int LTR ERV1 956 4119 -3666 * 1428 165 63 11 chr12 66781607 66781878 -77004577 - MER34C LTR ERV1 -3 582 297 1814 166 66 119 chr12 66781878 66782457 -77003998 + LTR10A LTR ERV1 1 548 -61 1602 123 24 0 chr12 66782474 66782726 -77003729 - MER34C LTR ERV1 -291 294 37 1685 207 65 61 chr12 66783031 66783546 -77002909 - LTR55 LTR ERV -5 543 24 1831 172 87 6 chr12 66783546 66783912 -77002543 - MSTD LTR MaLR 0 396 1 1685 207 65 61 chr12 66783912 66783937 -77002518 - LTR55 LTR ERV -524 24 1 382 320 27 14 chr12 66784105 66784252 -77002203 + MIR SINE MIR 83 231 -31 570 242 47 42 chr12 66785008 66785198 -77001257 - L2 LINE L2 0 3313 3123 951 311 39 68 chr12 66787477 66788335 -76998120 - L2 LINE L2 -31 3282 2449 221 253 27 0 chr12 66790243 66790318 -76996137 + (TG)n Simple_repeat Simple_repeat 1 77 0 1621 71 13 17 chr12 66791329 66791568 -76994887 + MER75B DNA T2_type 3 240 -3 1629 183 42 0 chr12 66793395 66793680 -76992775 + AluJo SINE Alu 1 297 -15 6486 34 4 1 chr12 66793689 66794473 -76991982 + L1PA4 LINE L1 5365 6150 -5 16777 71 10 2 chr12 66794575 66796852 -76989603 + L1PA5 LINE L1 1 2260 -3894 216 0 0 0 chr12 66796852 66796876 -76989579 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 16777 71 10 2 chr12 66796876 66800614 -76985841 + L1PA5 LINE L1 2260 6154 0 206 345 92 46 chr12 66800830 66801004 -76985451 - L3 LINE CR1 -373 1204 1023 216 67 0 0 chr12 66801123 66801153 -76985302 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2263 57 0 40 chr12 66801157 66801454 -76985001 - AluY SINE Alu -26 285 1 1171 275 62 18 chr12 66801766 66802363 -76984092 - L1ME3A LINE L1 -219 5951 5293 437 223 132 25 chr12 66802363 66802484 -76983971 + L2 LINE L2 3180 3313 0 364 286 146 0 chr12 66802489 66802660 -76983795 - L1ME3A LINE L1 -880 5266 5071 3758 71 30 0 chr12 66803565 66804071 -76982384 + L1PA10 LINE L1 5644 6164 -4 2185 128 0 22 chr12 66805499 66805818 -76980637 + AluJb SINE Alu 1 312 0 7981 148 30 28 chr12 66805821 66807888 -76978567 + L1MA9 LINE L1 3681 5743 -569 351 0 0 0 chr12 66807888 66807927 -76978528 + (CA)n Simple_repeat Simple_repeat 2 40 0 7981 148 30 28 chr12 66807927 66807946 -76978509 + L1MA9 LINE L1 5743 5760 -552 1991 148 3 0 chr12 66807946 66808237 -76978218 - AluSx SINE Alu -20 292 1 7981 148 30 28 chr12 66808237 66808632 -76977823 + L1MA9 LINE L1 5760 6183 -129 2480 68 0 10 chr12 66808632 66808941 -76977514 - AluY SINE Alu -5 306 1 7981 148 30 28 chr12 66808941 66809064 -76977391 + L1MA9 LINE L1 6183 6304 -8 390 42 0 0 chr12 66809145 66809193 -76977262 + (TG)n Simple_repeat Simple_repeat 1 48 0 225 154 0 0 chr12 66809525 66809564 -76976891 + GA-rich Low_complexity Low_complexity 2 40 0 2191 129 3 0 chr12 66810126 66810429 -76976026 + AluSp SINE Alu 1 304 -9 2209 101 0 11 chr12 66811207 66811544 -76974911 + AluSx SINE Alu 1 334 0 194 256 0 0 chr12 66812741 66812780 -76973675 - L2 LINE L2 -14 3258 3220 705 119 21 28 chr12 66813657 66813800 -76972655 + L1P5 LINE L1 5395 5536 -615 5972 134 20 59 chr12 66813907 66814596 -76971859 - Tigger1 DNA MER2_type -1251 1167 544 1558 65 0 15 chr12 66814596 66814796 -76971659 - MER107 DNA MER1_type 0 197 1 5972 134 20 59 chr12 66814796 66815317 -76971138 - Tigger1 DNA MER2_type -1874 544 4 286 172 0 109 chr12 66816138 66816202 -76970253 + MIR SINE MIR 2 58 -204 1281 98 0 0 chr12 66816202 66816366 -76970089 - AluSg SINE Alu -15 297 134 514 111 0 0 chr12 66816366 66816438 -76970017 - AluSg SINE Alu -246 72 1 750 224 62 0 chr12 66816440 66816619 -76969836 + MIR SINE MIR 52 241 -21 621 286 62 0 chr12 66817396 66817574 -76968881 - MIR SINE MIR 0 262 74 417 252 245 19 chr12 66817582 66817766 -76968689 - MIR SINE MIR 0 262 38 1263 133 17 0 chr12 66818259 66818621 -76967834 + AluSg/x SINE Alu 99 463 0 1377 183 66 11 chr12 66818641 66818914 -76967541 - MER21B LTR ERV1 -575 288 1 545 224 66 46 chr12 66819307 66819566 -76966889 + L1M4 LINE L1 4524 4787 -1359 325 254 49 81 chr12 66819590 66819775 -76966680 + L1ME LINE L1 4434 4612 -1534 205 250 0 0 chr12 66819803 66819843 -76966612 + (CA)n Simple_repeat Simple_repeat 2 41 0 2042 137 23 0 chr12 66819937 66820236 -76966219 + AluSg SINE Alu 5 310 0 307 231 97 30 chr12 66820251 66820385 -76966070 + L1ME LINE L1 5192 5334 -812 272 266 46 0 chr12 66820411 66820520 -76965935 + L1ME LINE L1 5373 5486 -684 3312 87 0 2 chr12 66821530 66822000 -76964455 + L1MA2 LINE L1 5485 5953 -352 745 164 0 23 chr12 66822002 66822130 -76964325 + FLAM_C SINE Alu 3 127 -16 2262 102 6 14 chr12 66822133 66822496 -76963959 + L1MA2 LINE L1 5938 6297 -7 786 236 57 32 chr12 66824067 66824313 -76962142 - MER110 LTR ERV1 -3 488 237 535 214 27 9 chr12 66824314 66824426 -76962029 - MER81 DNA DNA 0 114 1 444 227 9 0 chr12 66824626 66824736 -76961719 - L1MB4 LINE L1 -1 6179 6069 292 292 26 35 chr12 66824757 66824870 -76961585 - L2 LINE L2 -17 3255 3144 328 249 110 106 chr12 66824955 66825307 -76961148 - L1M2 LINE L1 -5707 1142 687 27 49 0 0 chr12 66825348 66825389 -76961066 + GC_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr12 66826511 66826579 -76959876 + AT_rich Low_complexity Low_complexity 1 68 0 466 198 51 45 chr12 66826832 66826989 -76959466 + MER103 DNA DNA 7 164 -2 1547 200 29 56 chr12 66827260 66827426 -76959029 - MLT1D-int LTR MaLR -938 433 264 2242 100 0 0 chr12 66827426 66827715 -76958740 + AluSx SINE Alu 6 294 -18 1547 200 29 56 chr12 66827715 66827993 -76958462 - MLT1D-int LTR MaLR -1107 264 1 1531 199 90 33 chr12 66828076 66828443 -76958012 - MLT1D LTR MaLR -117 388 1 21 36 0 0 chr12 66829787 66829815 -76956640 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr12 66829971 66830016 -76956439 + AT_rich Low_complexity Low_complexity 1 45 0 6289 109 10 43 chr12 66830593 66831074 -76955381 - Tigger1 DNA MER2_type 0 2418 1923 1839 152 31 3 chr12 66831074 66831363 -76955092 + AluSx SINE Alu 1 297 -15 6289 109 10 43 chr12 66831363 66831858 -76954597 - Tigger1 DNA MER2_type -495 1923 1477 1910 166 3 10 chr12 66831858 66832172 -76954283 - AluSx SINE Alu 0 312 1 6289 109 10 43 chr12 66832172 66832264 -76954191 - Tigger1 DNA MER2_type -941 1477 1384 25 51 0 0 chr12 66833502 66833541 -76952914 + AT_rich Low_complexity Low_complexity 1 39 0 805 127 0 70 chr12 66833762 66833904 -76952551 + FLAM_C SINE Alu 1 132 -1 24 32 0 0 chr12 66834074 66834105 -76952350 + AT_rich Low_complexity Low_complexity 1 31 0 1644 166 64 7 chr12 66834105 66834400 -76952055 + AluJb SINE Alu 1 312 0 1712 156 60 0 chr12 66834404 66834687 -76951768 + AluJb SINE Alu 1 300 -12 26 30 0 0 chr12 66834918 66834951 -76951504 + AT_rich Low_complexity Low_complexity 1 33 0 1944 224 94 10 chr12 66834959 66835544 -76950911 - L1MC4a LINE L1 -6 7802 7169 2527 90 0 0 chr12 66836043 66836355 -76950100 - AluSx SINE Alu 0 312 1 538 327 91 56 chr12 66836435 66837068 -76949387 - L2 LINE L2 -188 3084 2439 180 111 0 0 chr12 66837534 66837561 -76948894 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2139 222 28 4 chr12 66837645 66838140 -76948315 + MER119 DNA MER1_type 56 562 -21 1957 142 54 0 chr12 66838386 66838682 -76947773 - AluJb SINE Alu 0 312 1 234 265 122 0 chr12 66839340 66839438 -76947017 + MIR SINE MIR 143 252 -10 2060 138 3 3 chr12 66839730 66840026 -76946429 + AluSx SINE Alu 1 296 -16 1964 145 0 13 chr12 66840629 66840940 -76945515 + AluJb SINE Alu 1 307 -5 1556 145 37 77 chr12 66841978 66842303 -76944152 + AluJo SINE Alu 1 312 0 552 208 58 8 chr12 66842404 66842524 -76943931 + L2 LINE L2 3188 3313 0 191 300 0 20 chr12 66842675 66842725 -76943730 - MER5A DNA MER1_type -69 120 72 1125 170 22 54 chr12 66842884 66842943 -76943512 + MER20 DNA MER1_type 3 62 -157 2104 126 3 0 chr12 66842943 66843244 -76943211 - AluSx SINE Alu -10 302 1 1125 170 22 54 chr12 66843244 66843408 -76943047 + MER20 DNA MER1_type 62 219 0 1493 162 30 13 chr12 66843629 66843932 -76942523 - L1MA7 LINE L1 -5 6286 5979 2478 239 130 7 chr12 66845026 66845728 -76940727 + L2 LINE L2 649 1436 -1878 2270 94 7 0 chr12 66845730 66846027 -76940428 - AluSq SINE Alu -14 299 1 834 261 177 23 chr12 66846038 66846548 -76939907 + L2 LINE L2 2626 3218 -95 6306 132 66 33 chr12 66847382 66847672 -76938783 + Tigger3b DNA MER2_type 10 289 -2739 2043 117 174 11 chr12 66847672 66848040 -76938415 - MSTA LTR MaLR 0 428 1 6306 132 66 33 chr12 66848040 66848493 -76937962 + Tigger3b DNA MER2_type 289 726 -2302 2268 115 6 3 chr12 66848493 66848805 -76937650 - AluSq SINE Alu 0 313 1 6306 132 66 33 chr12 66848805 66849242 -76937213 + Tigger3b DNA MER2_type 726 1230 -1 190 329 101 58 chr12 66849351 66849679 -76936776 + L2 LINE L2 2306 2647 -667 978 247 129 4 chr12 66849799 66850237 -76936218 + AluJo SINE Alu 1 470 0 2096 123 3 13 chr12 66850342 66850642 -76935813 - AluSx SINE Alu -15 297 1 738 227 160 13 chr12 66851369 66851594 -76934861 - MLT1H1 LTR MaLR 0 555 298 907 275 105 40 chr12 66851805 66852300 -76934155 + MLT1H1 LTR MaLR 11 537 -18 1885 208 28 12 chr12 66852318 66852750 -76933705 + MER31A LTR ERV1 47 485 0 769 267 40 7 chr12 66853073 66853446 -76933009 + MER69 DNA AcHobo 4 462 -2064 * 990 236 208 0 chr12 66853439 66853842 -76932613 + MER69 DNA AcHobo 2038 2524 -2 394 309 137 0 chr12 66853846 66854014 -76932441 - MIR SINE MIR -59 203 13 2063 146 0 0 chr12 66854648 66854956 -76931499 + AluJb SINE Alu 1 308 -4 2227 146 22 0 chr12 66855541 66855897 -76930558 - THE1B LTR MaLR 0 364 1 1005 206 104 52 chr12 66856534 66856860 -76929595 - MER2 DNA MER2_type 0 344 2 2011 94 84 0 chr12 66856928 66857203 -76929252 - AluY SINE Alu -13 298 1 326 278 56 9 chr12 66857863 66857971 -76928484 - MIR SINE MIR -63 145 33 2117 125 10 0 chr12 66858228 66858516 -76927939 + AluSx SINE Alu 1 291 -21 626 261 109 13 chr12 66858694 66858924 -76927531 - MIR SINE MIR -2 260 9 1640 191 7 7 chr12 66858960 66859263 -76927192 - AluJo SINE Alu -7 305 3 239 196 18 0 chr12 66859907 66859963 -76926492 + L1ME LINE L1 5742 5798 -323 282 89 22 22 chr12 66860073 66860118 -76926337 + Alu SINE Alu 1 45 -254 229 302 47 0 chr12 66860221 66860307 -76926148 + L1MC4 LINE L1 6614 6703 -1339 * 266 296 0 0 chr12 66860279 66860367 -76926088 - L1MC4 LINE L1 -1339 6703 6616 308 294 0 22 chr12 66860381 66860473 -76925982 - L1MC4 LINE L1 -1339 6703 6614 * 324 294 0 0 chr12 66860394 66860479 -76925976 + L1MC4 LINE L1 6615 6699 -1343 1201 102 0 0 chr12 66860479 66860661 -76925794 + AluSp SINE Alu 130 311 0 2230 96 3 7 chr12 66860986 66861278 -76925177 + AluSq SINE Alu 3 293 -20 361 265 61 14 chr12 66861336 66861483 -76924972 + L1MC4a LINE L1 7261 7414 -394 240 255 0 0 chr12 66861638 66861685 -76924770 + L2 LINE L2 3264 3310 -3 3499 59 0 20 chr12 66862076 66862534 -76923921 - L1PA8 LINE L1 -10 6162 5714 188 267 27 53 chr12 66864984 66865059 -76921396 + L3 LINE CR1 312 384 -1193 2590 205 158 41 chr12 66865063 66865874 -76920581 - L1ME1 LINE L1 -7 6159 5254 500 222 18 53 chr12 66865883 66866054 -76920401 - L1MA10 LINE L1 -1 6333 6169 1862 225 107 6 chr12 66866077 66866585 -76919870 - L1ME1 LINE L1 -270 6132 5531 2007 124 7 20 chr12 66866585 66866891 -76919564 - AluSx SINE Alu -5 307 6 1862 225 107 6 chr12 66866891 66867201 -76919254 - L1ME1 LINE L1 -871 5531 5254 4614 248 52 34 chr12 66867207 66869001 -76917454 - L1ME1 LINE L1 -2157 4225 2429 1998 174 119 9 chr12 66869001 66869456 -76916999 - MLT1D LTR MaLR 0 505 1 4614 248 52 34 chr12 66869456 66869619 -76916836 - L1ME1 LINE L1 -3953 2429 2270 1028 271 37 12 chr12 66869605 66870008 -76916447 - L1M4 LINE L1 -3624 2522 2110 * 2722 181 54 18 chr12 66870022 66870648 -76915807 - L1MD1 LINE L1 0 6242 5594 2330 144 26 18 chr12 66870652 66871104 -76915351 - L1MA5 LINE L1 0 6300 5845 1237 282 68 56 chr12 66871135 66872470 -76913985 - L1ME1 LINE L1 -4304 2259 803 31 0 0 0 chr12 66872902 66872933 -76913522 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr12 66873146 66873186 -76913269 + AT_rich Low_complexity Low_complexity 1 40 0 485 161 11 43 chr12 66873774 66873867 -76912588 + L1M1 LINE L1 1409 1498 -6067 351 0 0 0 chr12 66874443 66874482 -76911973 + (TG)n Simple_repeat Simple_repeat 2 40 0 1000 123 49 12 chr12 66874945 66875107 -76911348 + MER1B DNA MER1_type 172 339 0 339 219 41 0 chr12 66875107 66875180 -76911275 - MIR SINE MIR -124 138 63 692 141 41 8 chr12 66875744 66875865 -76910590 + L1MA3 LINE L1 9 133 -7432 * 16194 141 27 13 chr12 66875862 66882408 -76904047 + L1MA3 LINE L1 1099 7724 0 585 230 198 32 chr12 66882579 66882766 -76903689 + MER20 DNA MER1_type 2 219 0 672 296 56 6 chr12 66882982 66883144 -76903311 - MER91A DNA MER1_type -25 171 2 195 222 22 0 chr12 66883899 66883944 -76902511 + L3b LINE CR1 1451 1496 -87 2251 116 3 0 chr12 66885276 66885579 -76900876 - AluSx SINE Alu -8 304 1 2251 125 0 0 chr12 66885591 66885896 -76900559 - AluSx SINE Alu -6 306 2 550 292 49 62 chr12 66886446 66886734 -76899721 - L2 LINE L2 -4 3309 3026 1363 155 4 50 chr12 66886745 66886984 -76899471 + MER46A DNA MER2_type 9 236 0 416 272 82 0 chr12 66887976 66888123 -76898332 - L1ME LINE L1 -363 5758 5600 213 225 0 0 chr12 66888148 66888188 -76898267 - L2 LINE L2 -15 3298 3259 4238 160 31 7 chr12 66888205 66888917 -76897538 + MER44D DNA MER2_type 5 605 0 203 290 81 0 chr12 66888917 66888979 -76897476 - L2 LINE L2 -68 3245 3179 382 268 76 13 chr12 66889946 66890103 -76896352 + HAL1 LINE L1 1496 1662 -845 792 256 61 20 chr12 66890297 66890543 -76895912 + MIR SINE MIR 6 261 -1 297 243 0 18 chr12 66890684 66890795 -76895660 + L1MC3 LINE L1 2470 2578 -3962 389 273 55 16 chr12 66890829 66891012 -76895443 + L1MC3 LINE L1 2626 2815 -3725 453 329 81 30 chr12 66891315 66891354 -76895101 + L1MC3 LINE L1 3210 3246 -3294 325 0 0 0 chr12 66891354 66891390 -76895065 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2096 98 7 0 chr12 66891390 66891667 -76894788 - AluSc SINE Alu -30 279 1 453 329 81 30 chr12 66891667 66891960 -76894495 + L1MC3 LINE L1 3245 3560 -2980 1268 159 25 29 chr12 66891960 66892205 -76894250 + Tigger1 DNA MER2_type 1022 1265 -1153 751 159 0 0 chr12 66892205 66892337 -76894118 + L1MB1 LINE L1 6028 6159 -9 23 0 0 0 chr12 66892488 66892511 -76893944 + AT_rich Low_complexity Low_complexity 1 23 0 2550 65 0 0 chr12 66892538 66892847 -76893608 - AluY SINE Alu 0 311 3 413 283 131 24 chr12 66892850 66893147 -76893308 + L1MC3 LINE L1 4371 4699 -1841 324 0 0 0 chr12 66893155 66893191 -76893264 + (A)n Simple_repeat Simple_repeat 1 36 0 1801 117 4 0 chr12 66893645 66893892 -76892563 + AluSq SINE Alu 1 248 -65 217 0 29 29 chr12 66893906 66893940 -76892515 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 316 213 199 22 chr12 66893995 66894131 -76892324 + L1MC3 LINE L1 5768 5927 -2275 365 337 88 33 chr12 66894133 66894462 -76891993 + L1MC3 LINE L1 5968 6314 -1888 475 273 206 14 chr12 66894750 66895032 -76891423 - L3 LINE CR1 -296 1281 946 383 198 2 2 chr12 66895050 66895132 -76891323 + L1MC3 LINE L1 6640 8155 -17 415 142 340 0 chr12 66895179 66895285 -76891170 + L1PA16 LINE L1 6025 6166 0 1208 147 22 13 chr12 66895544 66895768 -76890687 + AluJb SINE Alu 87 312 0 607 191 14 0 chr12 66895768 66895915 -76890540 + GA-rich Low_complexity Low_complexity 3 151 0 321 118 0 0 chr12 66895947 66895998 -76890457 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 6917 30 0 2 chr12 66896010 66897017 -76889438 + L1P2 LINE L1 4565 5570 -585 28 0 0 0 chr12 66897019 66897047 -76889408 + AT_rich Low_complexity Low_complexity 1 28 0 233 372 116 0 chr12 66897228 66897357 -76889098 + MIR SINE MIR 52 195 -67 235 256 0 26 chr12 66897380 66897458 -76888997 + (TATG)n Simple_repeat Simple_repeat 1 76 0 361 255 35 50 chr12 66898311 66898452 -76888003 - MIR SINE MIR -46 216 78 1809 109 4 4 chr12 66898516 66898763 -76887692 - AluSp SINE Alu -20 293 47 490 196 22 0 chr12 66898778 66898870 -76887585 - AluJb SINE Alu -188 124 31 2201 101 0 11 chr12 66900004 66900341 -76886114 - AluSx SINE Alu 0 334 1 2166 128 3 0 chr12 66901119 66901423 -76885032 - AluSp SINE Alu -8 305 1 240 163 0 0 chr12 66901985 66902028 -76884427 + CT-rich Low_complexity Low_complexity 2 44 0 372 43 0 0 chr12 66902358 66902404 -76884051 + (CA)n Simple_repeat Simple_repeat 1 46 0 5795 143 21 32 chr12 66902485 66902608 -76883847 - L1MA9 LINE L1 -8 6304 6181 2475 65 0 10 chr12 66902608 66902916 -76883539 + AluY SINE Alu 1 305 -6 5795 143 21 32 chr12 66902916 66903311 -76883144 - L1MA9 LINE L1 -131 6181 5783 1904 151 3 3 chr12 66903311 66903603 -76882852 + AluSx SINE Alu 1 292 -20 5795 143 21 32 chr12 66903603 66903622 -76882833 - L1MA9 LINE L1 -529 5783 5765 279 0 0 0 chr12 66903622 66903653 -76882802 + (TG)n Simple_repeat Simple_repeat 2 32 0 5795 143 21 32 chr12 66903653 66905094 -76881361 - L1MA9 LINE L1 -547 5765 4338 510 307 23 17 chr12 66905101 66905277 -76881178 - L2 LINE L2 0 3313 3137 238 214 174 31 chr12 66905386 66905484 -76880971 - LTR33 LTR ERVL -112 409 298 881 158 0 0 chr12 66905534 66905667 -76880788 + AluSq/x SINE Alu 1 133 -180 343 279 7 36 chr12 66905914 66906054 -76880401 - L2 LINE L2 -168 3145 3010 6808 35 1 1 chr12 66906154 66906972 -76879483 + L1PA4 LINE L1 5325 6142 -13 17700 66 10 4 chr12 66907081 66909359 -76877096 + L1PA3 LINE L1 1 2264 -3891 216 0 0 0 chr12 66909359 66909383 -76877072 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 17700 66 10 4 chr12 66909383 66913132 -76873323 + L1PA3 LINE L1 2264 6155 0 258 32 0 0 chr12 66913790 66913821 -76872634 + (TG)n Simple_repeat Simple_repeat 1 31 0 274 205 0 64 chr12 66913844 66914000 -76872455 + (TG)n Simple_repeat Simple_repeat 1 146 0 265 321 19 77 chr12 66914903 66915112 -76871343 + L2 LINE L2 3117 3313 0 46 62 0 0 chr12 66915520 66915601 -76870854 + AT_rich Low_complexity Low_complexity 1 81 0 346 331 114 12 chr12 66916119 66916285 -76870170 + MIR3 SINE MIR 20 202 -6 2066 129 7 13 chr12 66916297 66916600 -76869855 - AluSx SINE Alu -11 301 1 261 342 74 13 chr12 66916869 66917018 -76869437 - MIR SINE MIR -21 241 84 2082 134 3 3 chr12 66918218 66918523 -76867932 + AluSx SINE Alu 4 308 -4 298 259 231 9 chr12 66919491 66919599 -76866856 + MIR3 SINE MIR 66 197 -11 180 0 0 0 chr12 66919937 66919957 -76866498 + (T)n Simple_repeat Simple_repeat 1 20 0 464 185 76 0 chr12 66919957 66920076 -76866379 - LTR9B LTR ERV1 -86 558 431 2497 54 0 0 chr12 66920112 66920409 -76866046 - AluY SINE Alu -14 297 1 534 255 98 57 chr12 66921720 66922139 -76864316 + HAL1b LINE L1 100 535 -813 248 318 18 0 chr12 66922409 66922579 -76863876 + L1M4 LINE L1 2957 3129 -3017 280 239 46 18 chr12 66922584 66922693 -76863762 - L1MDb LINE L1 -4425 1981 1870 3246 75 19 0 chr12 66922693 66923122 -76863333 - L1PA10 LINE L1 -3 6165 5729 1292 139 0 0 chr12 66923128 66923344 -76863111 + L1P LINE L1 4661 4876 -1270 * 2972 228 72 29 chr12 66923341 66924671 -76861784 - L1MDb LINE L1 -4530 1876 519 1023 241 50 0 chr12 66924795 66925036 -76861419 + L1MC4a LINE L1 6546 6798 -1010 601 283 123 47 chr12 66925194 66926066 -76860389 - L1M4 LINE L1 -1550 4596 3659 1521 183 19 0 chr12 66926994 66927256 -76859199 - AluJb SINE Alu -45 267 1 27 29 0 0 chr12 66928451 66928485 -76857970 + AT_rich Low_complexity Low_complexity 1 34 0 383 388 62 7 chr12 66928548 66928659 -76857796 + L1MEd LINE L1 245 348 -5771 1660 204 16 22 chr12 66928659 66929026 -76857429 + MLT1A1 LTR MaLR 1 365 0 383 388 62 7 chr12 66929026 66929205 -76857250 + L1MEd LINE L1 348 551 -5568 1189 242 98 16 chr12 66929218 66929706 -76856749 + L1MC4a LINE L1 5658 6185 -1623 282 275 0 0 chr12 66929707 66929787 -76856668 + L1MEc LINE L1 35 114 -6282 * 1698 174 58 5 chr12 66929775 66930171 -76856284 + L1M3 LINE L1 3317 3733 -2413 180 77 0 0 chr12 66930171 66930197 -76856258 + (A)n Simple_repeat Simple_repeat 1 26 0 1208 145 11 69 chr12 66930225 66930487 -76855968 + L1M3 LINE L1 5318 5564 -619 3094 266 74 19 chr12 66930491 66931781 -76854674 + L1MEc LINE L1 576 1936 -4460 2862 215 99 27 chr12 66931781 66932830 -76853625 + L1MEc LINE L1 3000 4124 -2091 2403 87 3 0 chr12 66933211 66933521 -76852934 + AluSq SINE Alu 1 311 -2 1254 246 110 61 chr12 66934129 66934982 -76851473 + L1MC5 LINE L1 6625 7519 -442 1308 201 91 28 chr12 66935166 66935484 -76850971 - MER2 DNA MER2_type 0 345 8 1287 266 122 16 chr12 66935887 66936388 -76850067 + MARNA DNA Mariner 14 567 -19 38 0 0 0 chr12 66937688 66937726 -76848729 + AT_rich Low_complexity Low_complexity 1 38 0 582 204 88 0 chr12 66938197 66938334 -76848121 - MER58C DNA MER1_type 0 215 67 951 171 7 0 chr12 66938461 66938613 -76847842 + AluJb SINE Alu 1 153 -159 1777 112 39 8 chr12 66938816 66939075 -76847380 - AluSx SINE Alu -14 298 32 2220 114 0 7 chr12 66940217 66940514 -76845941 + AluSg SINE Alu 1 295 -15 357 190 76 0 chr12 66940586 66940665 -76845790 + L2 LINE L2 3225 3309 -4 836 118 69 0 chr12 66940880 66941024 -76845431 + L1MB1 LINE L1 6015 6168 0 228 191 56 0 chr12 66941029 66941118 -76845337 + (TA)n Simple_repeat Simple_repeat 2 95 0 205 376 11 11 chr12 66941149 66941242 -76845213 + MIR SINE MIR 56 148 -114 2153 121 0 0 chr12 66941889 66942179 -76844276 - AluSg SINE Alu -20 290 1 224 28 56 0 chr12 66942432 66942468 -76843987 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2278 79 3 3 chr12 66942468 66942752 -76843703 - AluSx SINE Alu -25 287 1 399 155 165 58 chr12 66942890 66942993 -76843462 + L2 LINE L2 3199 3312 -1 16092 70 1 0 chr12 66943184 66945367 -76841088 + L1P LINE L1 2 2185 -3961 2823 116 56 25 chr12 66945496 66946012 -76840443 + Tigger3(Golem) DNA MER2_type 2496 3027 -2 1507 162 8 0 chr12 66946020 66946279 -76840176 + L1MB4 LINE L1 5914 6174 -6 284 186 49 59 chr12 66946289 66946391 -76840064 - L1ME LINE L1 -323 5798 5698 424 264 117 5 chr12 66946392 66946589 -76839866 + L1ME4a LINE L1 5601 5819 -302 318 320 52 17 chr12 66946671 66946843 -76839612 + L1ME4a LINE L1 5943 6120 -1 443 331 25 6 chr12 66948114 66948274 -76838181 - MIR SINE MIR -50 212 50 22 0 0 0 chr12 66950153 66950175 -76836280 + AT_rich Low_complexity Low_complexity 1 22 0 309 331 73 7 chr12 66950710 66950846 -76835609 - MIR3 SINE MIR -7 201 57 2207 101 3 28 chr12 66951020 66951338 -76835117 + AluSg SINE Alu 1 310 0 24 0 0 0 chr12 66951596 66951620 -76834835 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr12 66951915 66951949 -76834506 + AT_rich Low_complexity Low_complexity 1 34 0 329 135 122 0 chr12 66952885 66952959 -76833496 - L1MC4 LINE L1 -5 8037 7955 27 29 0 0 chr12 66953398 66953432 -76833023 + AT_rich Low_complexity Low_complexity 1 34 0 436 280 33 12 chr12 66955363 66955532 -76830923 + MIR SINE MIR 21 192 -63 283 182 40 21 chr12 66955894 66955997 -76830458 + L1MC5 LINE L1 7838 8042 0 469 307 100 33 chr12 66956265 66956506 -76829949 + MIR SINE MIR 6 262 0 274 349 54 7 chr12 66957830 66957979 -76828476 + MIR SINE MIR 97 252 -10 2359 94 0 7 chr12 66958022 66958330 -76828125 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 66958330 66958351 -76828104 + AT_rich Low_complexity Low_complexity 1 21 0 1525 138 13 0 chr12 66958379 66958611 -76827844 - MER46A DNA MER2_type -1 235 1 1692 153 6 73 chr12 66959949 66960276 -76826179 - AluJb SINE Alu -5 307 3 22 0 0 0 chr12 66960683 66960705 -76825750 + AT_rich Low_complexity Low_complexity 1 22 0 2012 118 7 20 chr12 66960713 66961017 -76825438 + AluSx SINE Alu 1 300 -12 2029 121 14 4 chr12 66961366 66961672 -76824783 + AluSx SINE Alu 1 309 0 1527 175 16 41 chr12 66962025 66962339 -76824116 + AluJo SINE Alu 1 306 -6 1316 133 0 0 chr12 66962594 66962774 -76823681 - AluSq SINE Alu -133 180 1 978 198 17 0 chr12 66963623 66963795 -76822660 + MER5B DNA MER1_type 1 175 -3 2019 147 3 0 chr12 66963959 66964252 -76822203 + AluSx SINE Alu 1 294 -18 2049 124 0 29 chr12 66964257 66964571 -76821884 + AluSg SINE Alu 1 305 -5 2042 154 0 7 chr12 66964594 66964900 -76821555 + AluJb SINE Alu 1 304 -8 31 26 0 0 chr12 66965165 66965203 -76821252 + AT_rich Low_complexity Low_complexity 1 38 0 191 225 0 0 chr12 66965298 66965338 -76821117 + L2 LINE L2 2606 2645 -669 1650 164 31 7 chr12 66965416 66965703 -76820752 - AluJo SINE Alu -18 294 1 222 259 0 0 chr12 66965969 66966027 -76820428 + CT-rich Low_complexity Low_complexity 1 58 0 1050 225 0 5 chr12 66966029 66966242 -76820213 + MLT1A1 LTR MaLR 4 215 -150 379 258 83 96 chr12 66966282 66966418 -76820037 + L1ME4a LINE L1 5685 5821 -300 1714 181 47 6 chr12 66966418 66966783 -76819672 + L1MB7 LINE L1 5787 6166 -18 379 258 83 96 chr12 66966783 66966960 -76819495 + L1ME4a LINE L1 5821 5994 -127 307 157 71 0 chr12 66967632 66967702 -76818753 + L1ME LINE L1 5686 5760 -402 259 270 180 20 chr12 66968513 66968613 -76817842 + MIR SINE MIR 31 146 -116 333 0 0 0 chr12 66968656 66968693 -76817762 + (TG)n Simple_repeat Simple_repeat 2 38 0 1237 182 31 154 chr12 66968708 66969279 -76817176 - MLT2B1 LTR ERVL 0 520 20 2232 107 0 0 chr12 66969404 66969695 -76816760 - AluSx SINE Alu -21 291 1 5973 149 21 25 chr12 66970491 66972109 -76814346 + L1MA3 LINE L1 4689 6292 -13 1437 167 16 8 chr12 66972327 66972585 -76813870 + AluJo SINE Alu 9 268 -44 316 233 11 62 chr12 66972841 66973017 -76813438 + C-rich Low_complexity Low_complexity 6 172 0 31 58 0 0 chr12 66974955 66975007 -76811448 + AT_rich Low_complexity Low_complexity 1 52 0 898 228 5 5 chr12 66975161 66975358 -76811097 + L1M4 LINE L1 37 233 -6309 2069 148 0 3 chr12 66976433 66976731 -76809724 - AluSx SINE Alu -15 297 1 281 319 22 43 chr12 66976825 66977010 -76809445 + MLT1I LTR MaLR 115 295 -114 235 317 0 0 chr12 66978079 66978180 -76808275 + (TA)n Simple_repeat Simple_repeat 1 101 0 695 227 160 13 chr12 66978611 66978836 -76807619 - MLT1H1 LTR MaLR 0 555 298 785 271 106 41 chr12 66979047 66979538 -76806917 + MLT1H1 LTR MaLR 11 533 -22 1704 202 24 12 chr12 66979581 66979992 -76806463 + MER31A LTR ERV1 70 485 0 787 273 233 5 chr12 66980316 66980690 -76805765 + MER69 DNA AcHobo 4 462 -2064 * 804 191 145 8 chr12 66980683 66980924 -76805531 + MER69 DNA AcHobo 2038 2311 -215 235 267 27 0 chr12 66981012 66981087 -76805368 + MER69 DNA AcHobo 2448 2524 -2 431 298 137 0 chr12 66981091 66981259 -76805196 - MIR SINE MIR -59 203 13 2156 141 0 0 chr12 66981892 66982204 -76804251 + AluJb SINE Alu 1 312 0 2094 147 31 6 chr12 66982786 66983141 -76803314 - THE1B LTR MaLR 0 364 1 1091 205 95 43 chr12 66983778 66984105 -76802350 - MER2 DNA MER2_type 0 344 1 2304 92 0 0 chr12 66984174 66984468 -76801987 - AluY SINE Alu -17 294 1 346 278 56 9 chr12 66985130 66985238 -76801217 - MIR SINE MIR -63 145 33 2141 124 10 0 chr12 66985495 66985785 -76800670 + AluSx SINE Alu 1 293 -19 622 268 104 13 chr12 66985962 66986193 -76800262 - MIR SINE MIR -2 260 9 1708 185 7 7 chr12 66986229 66986532 -76799923 - AluJo SINE Alu -7 305 3 931 114 0 0 chr12 66987341 66987464 -76798991 + AluSp SINE Alu 1 123 -190 256 267 0 0 chr12 66987480 66987570 -76798885 - L1MC4 LINE L1 -1339 6703 6614 351 269 0 0 chr12 66987570 66987678 -76798777 + (TA)n Simple_repeat Simple_repeat 2 109 0 305 318 0 0 chr12 66987680 66987765 -76798690 + L1MC4 LINE L1 6614 6698 -1344 * 317 315 0 0 chr12 66987696 66987785 -76798670 - L1MC4 LINE L1 -1339 6703 6615 317 391 25 5 chr12 66988629 66988826 -76797629 + L1 LINE L1 3490 3690 -2456 243 0 0 0 chr12 66988858 66988885 -76797570 + (A)n Simple_repeat Simple_repeat 1 27 0 1286 130 8 61 chr12 66988915 66989176 -76797279 + L1M3 LINE L1 5318 5564 -619 2785 266 74 19 chr12 66989180 66990468 -76795987 + L1MEc LINE L1 576 1934 -4462 2768 229 56 27 chr12 66990470 66991540 -76794915 + L1MEc LINE L1 3000 4124 -2091 2415 87 3 0 chr12 66991921 66992231 -76794224 + AluSq SINE Alu 1 311 -2 1232 247 110 61 chr12 66992840 66993693 -76792762 + L1MC5 LINE L1 6625 7519 -442 1308 201 91 28 chr12 66993877 66994195 -76792260 - MER2 DNA MER2_type 0 345 8 1250 264 128 22 chr12 66994861 66995362 -76791093 + MARNA DNA Mariner 14 567 -19 38 0 0 0 chr12 66996663 66996701 -76789754 + AT_rich Low_complexity Low_complexity 1 38 0 582 204 88 0 chr12 66997172 66997309 -76789146 - MER58C DNA MER1_type 0 215 67 951 171 7 0 chr12 66997436 66997588 -76788867 + AluJb SINE Alu 1 153 -159 2091 103 31 7 chr12 66997791 66998082 -76788373 - AluSx SINE Alu -14 298 1 3760 71 30 0 chr12 66998987 66999493 -76786962 + L1PA10 LINE L1 5644 6164 -4 2286 101 7 0 chr12 67000921 67001219 -76785236 + AluSx SINE Alu 1 300 -12 2009 94 4 0 chr12 67001995 67002251 -76784204 - AluSx SINE Alu -24 288 32 2236 111 0 7 chr12 67003393 67003690 -76782765 + AluSg SINE Alu 1 295 -15 357 190 76 0 chr12 67003762 67003841 -76782614 + L2 LINE L2 3225 3309 -4 836 118 69 0 chr12 67004056 67004200 -76782255 + L1MB1 LINE L1 6015 6168 0 215 163 11 65 chr12 67004204 67004296 -76782159 + (TATAA)n Simple_repeat Simple_repeat 4 90 0 192 364 36 18 chr12 67004308 67004418 -76782037 + MIR SINE MIR 37 148 -114 2139 121 0 0 chr12 67005065 67005355 -76781100 - AluSg SINE Alu -20 290 1 2271 74 3 3 chr12 67005608 67005928 -76780527 - AluSx SINE Alu 0 320 1 400 155 165 58 chr12 67006066 67006169 -76780286 + L2 LINE L2 3199 3312 -1 42700 51 2 0 chr12 67006360 67012498 -76773957 + L1PA4 LINE L1 2 6150 -5 21898 86 19 4 chr12 67012600 67014877 -76771578 + L1PA5 LINE L1 1 2337 -3809 216 0 0 0 chr12 67014877 67014901 -76771554 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21898 86 19 4 chr12 67014901 67015651 -76770804 + L1PA5 LINE L1 2337 3074 -3072 16900 62 0 2 chr12 67015652 67018644 -76767811 + L1PA5 LINE L1 3150 6154 0 207 350 90 45 chr12 67018857 67019034 -76767421 - L3 LINE CR1 -370 1207 1023 216 67 0 0 chr12 67019153 67019183 -76767272 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2273 57 0 40 chr12 67019187 67019484 -76766971 - AluY SINE Alu -26 285 1 1284 274 62 18 chr12 67019796 67020393 -76766062 - L1ME3A LINE L1 -219 5951 5293 437 223 132 25 chr12 67020393 67020514 -76765941 + L2 LINE L2 3180 3313 0 1217 304 102 16 chr12 67020519 67021585 -76764870 - L1ME3A LINE L1 -880 5266 4109 26 0 0 0 chr12 67021729 67021755 -76764700 + AT_rich Low_complexity Low_complexity 1 26 0 313 260 91 50 chr12 67021797 67022155 -76764300 - MLT1L LTR MaLR -4 611 137 233 216 0 0 chr12 67022959 67023010 -76763445 + L1MC4 LINE L1 6652 6702 -1340 567 352 176 28 chr12 67023556 67024368 -76762087 + L2 LINE L2 2045 2976 -338 223 346 0 13 chr12 67024437 67024515 -76761940 + L2 LINE L2 3145 3221 -51 189 0 0 0 chr12 67025696 67025717 -76760738 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1012 77 0 0 chr12 67025717 67025847 -76760608 + L1PA5 LINE L1 5788 5917 -237 551 269 88 9 chr12 67025860 67026087 -76760368 + L1M4 LINE L1 4574 4818 -1328 528 210 25 25 chr12 67026128 67026220 -76760235 + L1MC/D LINE L1 180 274 -6266 1269 179 60 112 chr12 67026220 67026605 -76759850 + MLT1A1 LTR MaLR 1 365 0 528 210 25 25 chr12 67026605 67026631 -76759824 + L1MC/D LINE L1 273 298 -6242 1495 211 79 34 chr12 67026638 67026712 -76759743 + L1MC/D LINE L1 392 461 -6079 1800 105 0 4 chr12 67026712 67026951 -76759504 - AluSq SINE Alu -18 295 58 1495 211 79 34 chr12 67026951 67027283 -76759172 + L1MC/D LINE L1 461 1285 -5255 * 10599 206 14 28 chr12 67027274 67029162 -76757293 + L1PA15 LINE L1 2803 4647 -1499 186 43 0 0 chr12 67029162 67029185 -76757270 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 10599 206 14 28 chr12 67029185 67029858 -76756597 + L1PA15 LINE L1 4647 5328 -818 5329 130 19 5 chr12 67030390 67031227 -76755228 + L1PA15 LINE L1 5317 6165 0 2965 190 112 87 chr12 67031216 67031561 -76754894 + L1MC/D LINE L1 1259 1594 -4946 * 1585 167 52 7 chr12 67031561 67031879 -76754576 + AluJo SINE Alu 1 312 0 2965 190 112 87 chr12 67031879 67033196 -76753259 + L1MC/D LINE L1 1594 2957 -3583 1159 193 49 5 chr12 67033291 67033632 -76752823 + L1MC/D LINE L1 5568 5918 -718 258 174 87 29 chr12 67033696 67033765 -76752690 - L2 LINE L2 -1 3312 3240 232 275 55 0 chr12 67033794 67033885 -76752570 - L2 LINE L2 -1916 1398 1303 484 180 31 108 chr12 67034276 67034470 -76751985 - L1MCc LINE L1 -6221 202 24 707 267 35 17 chr12 67034481 67034653 -76751802 + L2 LINE L2 1122 1296 -2018 383 215 76 0 chr12 67034661 67034740 -76751715 - MER58B DNA MER1_type -1 340 256 1794 248 85 91 chr12 67034810 67036403 -76750052 - L1MCa LINE L1 -4851 1194 12 275 142 34 115 chr12 67036427 67036495 -76749960 - L1M4 LINE L1 -863 5283 5238 2159 120 3 0 chr12 67036495 67036794 -76749661 + AluSx SINE Alu 1 300 -12 275 142 34 115 chr12 67036794 67036842 -76749613 - L1M4 LINE L1 -908 5238 5188 426 335 49 0 chr12 67036857 67037042 -76749413 + MER74B LTR ERVL 379 572 -50 639 247 54 77 chr12 67037092 67037351 -76749104 + L1ME1 LINE L1 5909 6161 -5 1675 226 157 18 chr12 67037385 67038004 -76748451 + L1ME LINE L1 4190 4894 -1252 554 283 48 6 chr12 67037994 67038160 -76748295 + L1ME1 LINE L1 5989 6161 -5 * 463 311 94 18 chr12 67038174 67038556 -76747899 + L1ME LINE L1 5329 5739 -431 30 0 0 0 chr12 67038814 67038844 -76747611 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 67039797 67039827 -76746628 + AT_rich Low_complexity Low_complexity 1 30 0 383 346 78 0 chr12 67040805 67041010 -76745445 - MIR SINE MIR -21 241 21 23 0 0 0 chr12 67041025 67041048 -76745407 + AT_rich Low_complexity Low_complexity 1 23 0 689 153 35 59 chr12 67041213 67041383 -76745072 + L1MB4 LINE L1 6009 6174 -6 209 337 22 11 chr12 67041514 67041606 -76744849 - MIR SINE MIR -60 202 110 23 0 0 0 chr12 67041606 67041629 -76744826 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 67042288 67042317 -76744138 + AT_rich Low_complexity Low_complexity 1 29 0 2029 144 0 3 chr12 67042407 67042705 -76743750 + AluSx SINE Alu 1 297 -15 898 228 5 5 chr12 67043782 67043979 -76742476 - L1M4 LINE L1 -6309 233 37 31 58 0 0 chr12 67044133 67044185 -76742270 + AT_rich Low_complexity Low_complexity 1 52 0 313 268 186 68 chr12 67045877 67046216 -76740239 + L1M2 LINE L1 370 748 -6101 21 36 0 0 chr12 67046373 67046401 -76740054 + GC_rich Low_complexity Low_complexity 1 28 0 447 250 117 16 chr12 67047760 67047948 -76738507 + L1ME4a LINE L1 5688 5894 -227 421 262 131 12 chr12 67048040 67048208 -76738247 + MIR SINE MIR 74 261 -1 249 152 0 0 chr12 67048248 67048294 -76738161 + MADE1 DNA Mariner 1 46 -34 6334 32 1 0 chr12 67048767 67049548 -76736907 - L1PA5 LINE L1 -8 6146 5365 1718 168 42 0 chr12 67049557 67049842 -76736613 - AluJo SINE Alu -15 297 1 1672 71 8 17 chr12 67051670 67051910 -76734545 - MER75B DNA T2_type -3 240 3 230 281 53 53 chr12 67052065 67052179 -76734276 + MIR3 SINE MIR 64 177 -31 3066 164 44 7 chr12 67052948 67053558 -76732897 - L1MB8 LINE L1 -125 6053 5421 5067 179 60 16 chr12 67053568 67055527 -76730928 - L1MC2 LINE L1 -25 6319 4280 652 265 75 32 chr12 67055591 67056003 -76730452 + L1MC4a LINE L1 6159 6588 -1220 792 245 73 32 chr12 67056031 67056345 -76730110 + L1MC4 LINE L1 7572 7898 -144 306 305 17 8 chr12 67056417 67056535 -76729920 + L1MC4 LINE L1 7924 8042 0 281 120 65 98 chr12 67056581 67056673 -76729782 + L3 LINE CR1 1219 1307 -270 2306 113 0 0 chr12 67058801 67059102 -76727353 + AluSc SINE Alu 1 301 -8 387 156 0 0 chr12 67062793 67062857 -76723598 - MER8 DNA MER2_type 0 239 176 * 2328 135 56 7 chr12 67062846 67063277 -76723178 + Tigger2 DNA MER2_type 2267 2718 0 222 37 0 0 chr12 67063314 67063341 -76723114 + (TCTCCC)n Simple_repeat Simple_repeat 2 28 0 10986 48 2 64 chr12 67063341 67064819 -76721636 + SVA Other Other 1 1386 0 235 118 20 20 chr12 67064819 67064870 -76721585 + L1PB2 LINE L1 6093 6143 -8 29 28 0 0 chr12 67064870 67064906 -76721549 + AT_rich Low_complexity Low_complexity 1 36 0 229 306 22 45 chr12 67065224 67065358 -76721097 - MIR SINE MIR -58 150 20 23 0 0 0 chr12 67066429 67066452 -76720003 + AT_rich Low_complexity Low_complexity 1 23 0 391 252 26 0 chr12 67067019 67067134 -76719321 + L1MC4a LINE L1 5806 5923 -1885 445 210 0 96 chr12 67067335 67067401 -76719054 - L1MA10 LINE L1 -7 6327 5962 1991 120 10 10 chr12 67067401 67067701 -76718754 + AluSq SINE Alu 1 300 -13 1995 237 82 17 chr12 67067701 67069595 -76716860 - L1ME1 LINE L1 -50 6116 4021 2400 85 3 0 chr12 67069595 67069902 -76716553 + AluSp SINE Alu 2 309 -4 1995 237 82 17 chr12 67069902 67070346 -76716109 - L1ME1 LINE L1 -2145 4021 3607 282 116 0 0 chr12 67070447 67070490 -76715965 + (TA)n Simple_repeat Simple_repeat 2 44 0 1268 102 11 0 chr12 67070490 67070667 -76715788 + AluSp SINE Alu 131 309 -4 2158 107 3 7 chr12 67070994 67071285 -76715170 + AluSq SINE Alu 3 292 -21 349 289 57 6 chr12 67071330 67071489 -76714966 + L1MC4a LINE L1 7248 7414 -394 479 228 76 89 chr12 67071800 67072024 -76714431 - LTR67 LTR ERVL -335 222 2 2317 117 3 0 chr12 67072623 67072931 -76713524 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr12 67073681 67073709 -76712746 + AT_rich Low_complexity Low_complexity 1 28 0 308 203 14 0 chr12 67073857 67073926 -76712529 + MLT1J LTR MaLR 100 169 -342 209 357 138 40 chr12 67074885 67075109 -76711346 + L2 LINE L2 2810 3055 -217 182 255 0 21 chr12 67075123 67075170 -76711285 + MIR SINE MIR 2 47 -215 328 276 0 11 chr12 67075300 67075387 -76711068 + MIR SINE MIR 162 247 -15 720 184 0 0 chr12 67076441 67076555 -76709900 + FLAM_C SINE Alu 3 116 -27 34 0 0 0 chr12 67076555 67076589 -76709866 + AT_rich Low_complexity Low_complexity 1 34 0 1794 209 94 58 chr12 67077338 67077942 -76708513 - MLT1E2 LTR MaLR 0 614 1 2198 121 3 3 chr12 67078112 67078418 -76708037 + AluSx SINE Alu 1 306 -6 271 331 83 23 chr12 67078603 67078736 -76707719 + MIR3 SINE MIR 2 142 -66 221 224 20 0 chr12 67080183 67080232 -76706223 + L2 LINE L2 3258 3307 -6 204 347 21 11 chr12 67080258 67080353 -76706102 + L3 LINE CR1 1005 1100 -477 25 0 0 0 chr12 67080358 67080383 -76706072 + AT_rich Low_complexity Low_complexity 1 25 0 393 167 65 37 chr12 67080383 67080491 -76705964 - L1ME1 LINE L1 -4 6162 6052 3025 197 72 31 chr12 67080632 67081807 -76704648 - L1ME1 LINE L1 -455 5711 4478 1498 158 0 0 chr12 67081807 67082029 -76704426 - AluJb SINE Alu -7 305 84 3025 197 72 31 chr12 67082029 67082187 -76704268 - L1ME1 LINE L1 -1688 4478 4328 1868 163 7 7 chr12 67082190 67082485 -76703970 + AluJo SINE Alu 1 295 -17 1176 42 24 6 chr12 67082500 67082666 -76703789 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 797 163 17 21 chr12 67082670 67082909 -76703546 + GA-rich Low_complexity Low_complexity 1 238 0 266 329 82 41 chr12 67082936 67083082 -76703373 + L3 LINE CR1 1120 1271 -306 2269 194 51 16 chr12 67083387 67083878 -76702577 - LTR40a LTR ERVL -2 517 10 910 140 11 11 chr12 67083888 67084067 -76702388 + GA-rich Low_complexity Low_complexity 2 180 0 1682 171 18 18 chr12 67084972 67085258 -76701197 + AluJo SINE Alu 1 286 -26 31 0 0 0 chr12 67085258 67085289 -76701166 + AT_rich Low_complexity Low_complexity 1 31 0 1273 156 0 55 chr12 67086070 67086288 -76700167 + AluJb SINE Alu 1 206 -106 341 313 40 0 chr12 67086335 67086434 -76700021 + L2 LINE L2 3211 3313 0 761 271 49 46 chr12 67086740 67087131 -76699324 - MLT1I LTR MaLR -2 407 16 1747 183 71 6 chr12 67087434 67087773 -76698682 - MLT1A1 LTR MaLR 0 365 5 763 241 162 32 chr12 67088173 67088518 -76697937 + L1ME3A LINE L1 5766 6155 -15 1565 231 72 9 chr12 67088821 67089096 -76697359 - MER110 LTR ERV1 -16 475 160 3974 95 54 18 chr12 67089096 67089707 -76696748 - LTR10E LTR ERV1 0 633 1 1565 231 72 9 chr12 67089707 67089876 -76696579 - MER110 LTR ERV1 -331 160 3 25 31 0 0 chr12 67089911 67089943 -76696512 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 67090028 67090063 -76696392 + AT_rich Low_complexity Low_complexity 1 35 0 22 94 0 0 chr12 67090080 67090144 -76696311 + AT_rich Low_complexity Low_complexity 1 64 0 31 58 0 0 chr12 67090167 67090219 -76696236 + AT_rich Low_complexity Low_complexity 1 52 0 1704 200 3 0 chr12 67090679 67090974 -76695481 + AluJo SINE Alu 1 296 -16 1702 204 60 53 chr12 67090975 67091411 -76695044 - MER21B LTR ERV1 -60 803 365 3117 250 65 16 chr12 67091516 67092293 -76694162 - L1MEc LINE L1 -2689 3526 2789 2437 76 0 3 chr12 67092293 67092597 -76693858 - AluY SINE Alu -8 303 1 3117 250 65 16 chr12 67092597 67093724 -76692731 - L1MEc LINE L1 -3426 2789 1571 482 203 0 0 chr12 67093724 67093803 -76692652 + Tigger5 DNA MER2_type 1 79 -2244 395 224 0 0 chr12 67093842 67093918 -76692537 + Tigger5 DNA MER2_type 2247 2322 -1 4468 253 47 43 chr12 67093920 67095443 -76691012 - L1MEc LINE L1 -4825 1571 42 610 204 7 21 chr12 67095448 67095590 -76690865 + MER5B DNA MER1_type 33 172 -6 23 0 0 0 chr12 67095662 67095685 -76690770 + AT_rich Low_complexity Low_complexity 1 23 0 372 22 0 0 chr12 67096066 67096111 -76690344 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 180 139 152 63 chr12 67096165 67096244 -76690211 - L2 LINE L2 -121 3192 3107 * 238 287 93 28 chr12 67096234 67096342 -76690113 + MIR SINE MIR 136 250 -12 724 206 48 0 chr12 67098365 67098530 -76687925 - MER5A DNA MER1_type 0 189 17 828 258 74 0 chr12 67098535 67098764 -76687691 + MIR SINE MIR 7 252 -10 22 35 0 0 chr12 67098774 67098803 -76687652 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 67099028 67099056 -76687399 + AT_rich Low_complexity Low_complexity 1 28 0 2196 100 3 0 chr12 67099942 67100233 -76686222 - AluSp SINE Alu -21 292 1 373 387 24 6 chr12 67100531 67100699 -76685756 + MIR3 SINE MIR 20 190 -18 27 49 0 0 chr12 67100762 67100803 -76685652 + AT_rich Low_complexity Low_complexity 1 41 0 1763 188 64 9 chr12 67100941 67101287 -76685168 + MLT1A1 LTR MaLR 1 365 0 1293 193 87 25 chr12 67101432 67101753 -76684702 - MER58B DNA MER1_type 0 341 1 370 280 143 17 chr12 67103168 67103343 -76683112 + L1ME LINE L1 945 1141 -4978 183 188 0 0 chr12 67103492 67103540 -76682915 + A-rich Low_complexity Low_complexity 1 48 0 263 263 114 81 chr12 67103640 67103876 -76682579 + HAL1b LINE L1 331 574 -774 330 336 138 23 chr12 67104298 67104515 -76681940 + MIR SINE MIR 21 262 0 423 232 50 10 chr12 67104752 67104851 -76681604 - L2 LINE L2 0 3313 3211 2761 305 58 24 chr12 67104876 67106111 -76680344 - L2 LINE L2 -366 2948 1672 751 73 0 3 chr12 67106588 67106820 -76679635 + AluSp SINE Alu 1 309 -4 27 0 0 0 chr12 67106878 67106905 -76679550 + AT_rich Low_complexity Low_complexity 1 27 0 404 322 103 31 chr12 67106909 67107328 -76679127 + L1ME LINE L1 3878 4326 -1803 491 230 155 27 chr12 67107390 67107679 -76678776 - Charlie5 DNA MER1_type 0 2623 1 463 351 77 37 chr12 67107822 67108394 -76678061 + L1ME LINE L1 4512 5106 -1023 301 286 30 91 chr12 67108416 67108615 -76677840 + L1ME LINE L1 5167 5353 -776 300 244 221 8 chr12 67108616 67108743 -76677712 + L1ME LINE L1 5435 5588 -516 2077 155 41 5 chr12 67108749 67109260 -76677195 + Tigger3b DNA MER2_type 1 596 -635 22 0 0 0 chr12 67159777 67159799 -76626656 + AT_rich Low_complexity Low_complexity 1 22 0 1667 198 0 3 chr12 67159868 67160156 -76626299 + AluJo SINE Alu 1 287 -25 653 269 46 69 chr12 67160948 67161297 -76625158 + MER102b DNA MER1_type 1 341 0 2536 71 0 3 chr12 67162221 67162530 -76623925 + AluY SINE Alu 1 308 -3 185 218 236 0 chr12 67164071 67164126 -76622329 + L2 LINE L2 3201 3268 -4 285 118 0 0 chr12 67164443 67164494 -76621961 + (TG)n Simple_repeat Simple_repeat 1 51 0 843 121 0 0 chr12 67164781 67164897 -76621558 + FLAM_C SINE Alu 1 116 -27 2253 88 7 3 chr12 67165576 67165871 -76620584 + AluSx SINE Alu 1 296 -16 623 318 47 9 chr12 67166076 67166290 -76620165 + MIR SINE MIR 31 252 -10 24 32 0 0 chr12 67167220 67167251 -76619204 + AT_rich Low_complexity Low_complexity 1 31 0 1005 197 52 28 chr12 67168131 67168420 -76618035 - MER33 DNA MER1_type -28 296 1 182 171 49 0 chr12 67169283 67169324 -76617131 + L2 LINE L2 3266 3308 -5 359 298 75 43 chr12 67169389 67169574 -76616881 - MIR SINE MIR -52 210 11 3991 169 27 29 chr12 67170923 67171748 -76614707 - L1MB8 LINE L1 -17 6161 5325 2450 77 13 0 chr12 67171748 67172047 -76614408 - AluSc SINE Alu -6 303 1 3991 169 27 29 chr12 67172047 67172191 -76614264 - L1MB8 LINE L1 -853 5325 5182 317 293 0 0 chr12 67172369 67172444 -76614011 + L2 LINE L2 3186 3260 -12 1581 190 3 14 chr12 67172761 67173051 -76613404 - AluJo SINE Alu -13 299 13 2254 113 0 0 chr12 67173302 67173603 -76612852 - AluSx SINE Alu -11 301 1 197 32 0 32 chr12 67174064 67174095 -76612360 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2519 55 7 0 chr12 67174641 67174950 -76611505 + AluY SINE Alu 1 311 0 275 314 21 57 chr12 67174988 67175128 -76611327 + MIR SINE MIR 37 171 -91 374 289 58 0 chr12 67175507 67175628 -76610827 - MIR SINE MIR -12 250 123 289 253 133 20 chr12 67176335 67176584 -76609871 - L1ME4a LINE L1 -1 6120 5844 26 50 0 0 chr12 67177145 67177185 -76609270 + AT_rich Low_complexity Low_complexity 1 40 0 596 125 75 17 chr12 67177335 67177455 -76609000 - Tigger3(Golem) DNA MER2_type -182 2847 2721 255 59 0 0 chr12 67177453 67177487 -76608968 - Tigger3(Golem) DNA MER2_type -2947 82 49 * 1101 176 0 0 chr12 67177485 67177667 -76608788 + Tigger3(Golem) DNA MER2_type 2839 3020 -9 269 327 40 0 chr12 67178187 67178288 -76608167 + L2 LINE L2 2684 2788 -526 * 794 210 112 19 chr12 67178279 67178484 -76607971 + L2 LINE L2 3090 3313 0 1033 316 142 46 chr12 67179095 67180481 -76605974 - L2 LINE L2 0 3272 2020 324 0 0 0 chr12 67180481 67180517 -76605938 + (TG)n Simple_repeat Simple_repeat 2 37 0 1033 316 142 46 chr12 67180517 67180568 -76605887 - L2 LINE L2 -1252 2020 1975 1555 209 0 14 chr12 67180568 67180860 -76605595 + AluJo SINE Alu 1 288 -24 1033 316 142 46 chr12 67180860 67181002 -76605453 - L2 LINE L2 -1297 1975 1537 258 296 30 23 chr12 67181416 67181548 -76604907 + HAL1b LINE L1 432 564 -784 490 241 100 71 chr12 67181628 67182062 -76604393 + MLT1H LTR MaLR 69 549 0 658 238 5 28 chr12 67182999 67183244 -76603211 + L1MDb LINE L1 843 1068 -5341 423 184 0 0 chr12 67183261 67183348 -76603107 + GA-rich Low_complexity Low_complexity 1 87 0 1912 133 4 7 chr12 67183350 67183628 -76602827 - AluJb SINE Alu -35 277 1 1894 187 65 48 chr12 67183628 67184247 -76602208 + L1MDb LINE L1 1035 1663 -4743 487 193 64 0 chr12 67184252 67184361 -76602094 - MER20 DNA MER1_type -102 117 2 2282 89 3 22 chr12 67184596 67184911 -76601544 - AluSc SINE Alu 0 309 1 1661 168 7 24 chr12 67185602 67185894 -76600561 + AluJo SINE Alu 1 287 -25 30 0 0 0 chr12 67185894 67185924 -76600531 + AT_rich Low_complexity Low_complexity 1 30 0 488 215 0 0 chr12 67186320 67186413 -76600042 + FRAM SINE Alu 69 161 -15 1890 114 26 4 chr12 67186510 67186774 -76599681 + AluSx SINE Alu 35 304 -8 1439 205 38 31 chr12 67186823 67187111 -76599344 - AluJb SINE Alu -22 290 1 1565 185 25 35 chr12 67187929 67188243 -76598212 + AluJo SINE Alu 1 311 -1 878 146 0 56 chr12 67188500 67188644 -76597811 - AluJo SINE Alu -176 136 1 762 275 85 0 chr12 67188646 67188857 -76597598 - MIR SINE MIR -33 229 1 1809 185 0 13 chr12 67189098 67189401 -76597054 - AluJb SINE Alu -9 303 5 2622 49 0 0 chr12 67190097 67190402 -76596053 + AluY SINE Alu 3 307 -4 386 314 47 18 chr12 67190444 67190613 -76595842 + MIR SINE MIR 36 209 -53 33 25 0 0 chr12 67190694 67190734 -76595721 + AT_rich Low_complexity Low_complexity 1 40 0 2176 107 0 7 chr12 67190734 67191034 -76595421 + AluSx SINE Alu 1 298 -14 218 316 53 61 chr12 67192121 67192235 -76594220 - L2 LINE L2 -9 3263 3151 299 347 224 20 chr12 67192313 67192662 -76593793 - L2 LINE L2 0 3272 2853 303 318 11 11 chr12 67192748 67192836 -76593619 + MIR SINE MIR 21 108 -100 253 239 37 67 chr12 67193006 67193140 -76593315 - LTR16A1 LTR ERVL -310 147 18 504 0 0 0 chr12 67193147 67193203 -76593252 + (CA)n Simple_repeat Simple_repeat 2 57 0 203 147 0 0 chr12 67193206 67193240 -76593215 + (CAGAGA)n Simple_repeat Simple_repeat 1 34 0 833 108 78 0 chr12 67193704 67193833 -76592622 + MER85 DNA T2_type 1 139 0 617 291 64 14 chr12 67194453 67194673 -76591782 + MIR SINE MIR 11 241 -21 23 33 0 0 chr12 67195929 67195959 -76590496 + AT_rich Low_complexity Low_complexity 1 30 0 2661 214 29 40 chr12 67196171 67196773 -76589682 - L1M4 LINE L1 -1109 5037 4444 1946 106 98 0 chr12 67196773 67197038 -76589417 - AluSq SINE Alu -22 291 1 2661 214 29 40 chr12 67197038 67197206 -76589249 - L1M4 LINE L1 -1702 4444 4276 2202 104 3 0 chr12 67197248 67197536 -76588919 - AluSc SINE Alu -20 289 1 1744 163 135 3 chr12 67198081 67198430 -76588025 - MLT2C1 LTR ERVL 0 397 3 2556 68 0 0 chr12 67199366 67199676 -76586779 + AluY SINE Alu 1 310 -1 819 173 63 47 chr12 67200478 67200669 -76585786 - MIR SINE MIR -2 260 67 1826 160 3 23 chr12 67200674 67200981 -76585474 + AluJo SINE Alu 1 301 -11 262 45 45 0 chr12 67201553 67201597 -76584858 - AluJb SINE Alu 0 302 257 1311 160 10 0 chr12 67201601 67201801 -76584654 - AluJb SINE Alu -106 206 5 316 228 0 89 chr12 67201805 67201906 -76584549 + L1MC4 LINE L1 6614 6705 -1337 561 194 114 34 chr12 67202055 67202230 -76584225 + MER5C DNA MER1_type 20 208 -116 255 332 114 31 chr12 67202711 67202904 -76583551 + L2 LINE L2 3105 3313 0 1923 156 30 3 chr12 67204583 67204885 -76581570 - AluJb SINE Alu -2 310 1 191 338 0 40 chr12 67205003 67205077 -76581378 - L2 LINE L2 -1 3312 3242 300 243 48 39 chr12 67205694 67205797 -76580658 + MIR SINE MIR 159 262 0 527 276 61 28 chr12 67206799 67206980 -76579475 - MIR SINE MIR -74 188 2 1832 186 3 0 chr12 67206981 67207272 -76579183 - AluJb SINE Alu -15 297 6 241 272 39 29 chr12 67207509 67207612 -76578843 - L2 LINE L2 -52 3261 3158 1792 161 0 37 chr12 67207738 67208060 -76578395 - AluJb SINE Alu -2 310 1 466 125 0 0 chr12 67208108 67208172 -76578283 - AluS SINE Alu -254 64 1 234 150 0 0 chr12 67208199 67208239 -76578216 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 851 298 39 16 chr12 67208522 67208955 -76577500 - L1ME2 LINE L1 -321 5843 5401 867 307 98 22 chr12 67208963 67209613 -76576842 - L2 LINE L2 -272 3041 2342 726 353 161 17 chr12 67209628 67210292 -76576163 + L2 LINE L2 2279 3045 -227 325 157 0 0 chr12 67210393 67210444 -76576011 + FRAM SINE Alu 56 106 -60 2001 148 0 3 chr12 67210678 67210983 -76575472 - AluSx SINE Alu -8 304 1 184 340 52 46 chr12 67211227 67211380 -76575075 + L2 LINE L2 2772 2925 -389 * 439 293 84 31 chr12 67211370 67211561 -76574894 + L2 LINE L2 3070 3270 -2 2157 99 6 52 chr12 67212564 67212888 -76573567 + AluSx SINE Alu 1 309 -3 208 160 40 40 chr12 67213526 67213576 -76572879 + L2 LINE L2 3262 3311 -2 519 329 69 22 chr12 67214936 67215167 -76571288 - MIR SINE MIR 0 262 21 1438 139 43 4 chr12 67215235 67215516 -76570939 - L1MA7 LINE L1 -2 6289 5998 230 347 52 67 chr12 67215877 67216070 -76570385 + L2 LINE L2 3080 3269 -3 292 123 0 123 chr12 67216563 67216628 -76569827 + MER103 DNA DNA 60 116 -50 347 181 18 60 chr12 67216885 67217264 -76569191 + L1ME2 LINE L1 5530 6062 -100 2895 150 91 22 chr12 67217264 67217757 -76568698 - MER1A DNA MER1_type 0 527 1 347 181 18 60 chr12 67217757 67217845 -76568610 + L1ME2 LINE L1 6062 6152 -10 577 304 70 2 chr12 67217845 67218033 -76568422 + MIR SINE MIR 2 192 -66 489 271 7 14 chr12 67218105 67218245 -76568210 - MER5B DNA MER1_type 0 178 40 233 151 94 19 chr12 67218497 67218550 -76567905 - L1PA8A LINE L1 -1 6130 6074 * 1811 54 0 0 chr12 67218548 67218789 -76567666 + L1PA8A LINE L1 5322 5562 -569 971 128 0 0 chr12 67218883 67219016 -76567439 + AluSq/x SINE Alu 1 133 -179 199 191 0 111 chr12 67220149 67220212 -76566243 - L2 LINE L2 -1 3312 3257 206 341 37 67 chr12 67220271 67220406 -76566049 - L2 LINE L2 0 3313 3183 1565 104 0 23 chr12 67220752 67220973 -76565482 + AluSg/x SINE Alu 83 298 -12 2135 113 7 0 chr12 67221582 67221865 -76564590 + AluSc SINE Alu 1 285 -24 354 80 0 0 chr12 67221865 67221915 -76564540 + L1PA3 LINE L1 6101 6150 -5 209 286 57 0 chr12 67223559 67223629 -76562826 - L3b LINE CR1 -217 1366 1293 444 240 16 62 chr12 67223735 67223864 -76562591 + L2 LINE L2 3145 3267 -5 23 0 0 0 chr12 67224006 67224029 -76562426 + AT_rich Low_complexity Low_complexity 1 23 0 281 222 37 0 chr12 67224651 67224732 -76561723 + L1ME4a LINE L1 5965 6048 -73 240 240 60 60 chr12 67225479 67225579 -76560876 - MIR SINE MIR -74 188 89 196 271 0 21 chr12 67225691 67225739 -76560716 - L2 LINE L2 -25 3247 3201 832 180 14 0 chr12 67227548 67227687 -76558768 + AluJo SINE Alu 1 141 -171 2518 87 0 0 chr12 67227907 67228217 -76558238 + AluSx SINE Alu 1 310 -2 249 358 18 9 chr12 67228243 67228352 -76558103 - L2 LINE L2 -7 3265 3156 195 42 0 0 chr12 67228467 67228491 -76557964 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1993 77 0 0 chr12 67229681 67229986 -76556469 + AluY SINE Alu 37 341 0 349 152 25 79 chr12 67230141 67230608 -76555847 + (TA)n Simple_repeat Simple_repeat 1 441 0 191 389 30 38 chr12 67230645 67230776 -76555679 - L2 LINE L2 0 3272 3143 673 247 57 32 chr12 67231297 67231576 -76554879 + L1ME1 LINE L1 3863 4148 -1998 * 1449 203 65 12 chr12 67231574 67232002 -76554453 + L1ME1 LINE L1 4634 5084 -1062 * 2433 193 73 42 chr12 67231995 67232529 -76553926 + L1ME1 LINE L1 5409 6114 -220 2021 123 0 28 chr12 67232529 67232846 -76553609 + AluSg SINE Alu 1 308 -2 2433 193 73 42 chr12 67232846 67233075 -76553380 + L1ME1 LINE L1 6114 6334 0 270 283 17 33 chr12 67233508 67233681 -76552774 + LTR16A LTR ERVL 42 292 -158 1572 68 0 0 chr12 67233877 67234084 -76552371 + L1PA7 LINE L1 5925 6131 -23 328 68 17 17 chr12 67234187 67234246 -76552209 + L1PA8 LINE L1 6113 6171 -1 1448 141 177 10 chr12 67234960 67235265 -76551190 + MLT1A1 LTR MaLR 10 365 0 508 205 55 47 chr12 67235266 67235393 -76551062 + MIR SINE MIR 57 184 -78 378 281 5 91 chr12 67235660 67235870 -76550585 + L2 LINE L2 2197 2388 -926 814 226 63 44 chr12 67235900 67236152 -76550303 + MIR SINE MIR 6 262 0 344 320 19 0 chr12 67236181 67236284 -76550171 + L2 LINE L2 3162 3266 -6 37 39 0 0 chr12 67238334 67238385 -76548070 + AT_rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr12 67239102 67239122 -76547333 + (T)n Simple_repeat Simple_repeat 1 20 0 319 316 115 48 chr12 67239372 67239729 -76546726 - L2 LINE L2 -5 3308 2928 543 270 97 58 chr12 67240690 67240713 -76545742 + L3 LINE CR1 1160 1181 -396 2198 116 23 44 chr12 67240713 67241057 -76545398 - MER1B DNA MER1_type 0 337 1 543 270 97 58 chr12 67241057 67241259 -76545196 + L3 LINE CR1 1181 1394 -183 537 248 45 13 chr12 67241521 67241678 -76544777 - MIR SINE MIR 0 262 101 325 272 35 9 chr12 67244209 67244323 -76542132 + L1ME LINE L1 5555 5671 -450 1397 123 221 0 chr12 67244624 67244868 -76541587 + AluJb SINE Alu 1 298 -4 205 246 136 73 chr12 67244970 67245080 -76541375 - L2 LINE L2 -956 2358 2242 1946 151 27 0 chr12 67245344 67245642 -76540813 - AluJo SINE Alu -6 306 1 849 161 0 0 chr12 67245711 67245829 -76540626 - AluJb SINE Alu -194 118 1 639 281 153 22 chr12 67246824 67247052 -76539403 - MIR SINE MIR -3 259 2 1500 112 14 5 chr12 67247210 67247424 -76539031 + L1PA13 LINE L1 5948 6163 0 240 35 0 0 chr12 67247550 67247579 -76538876 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2111 143 0 0 chr12 67247601 67247908 -76538547 - AluSx SINE Alu -5 307 1 1565 140 27 149 chr12 67248956 67249291 -76537164 + AluJb SINE Alu 2 295 -7 1094 136 0 8 chr12 67250536 67250757 -76535698 + AluSx SINE Alu 1 297 -13 579 15 0 0 chr12 67250767 67250835 -76535620 + (TA)n Simple_repeat Simple_repeat 2 69 0 2303 104 0 0 chr12 67251703 67252001 -76534454 + AluSx SINE Alu 1 298 -14 372 254 72 107 chr12 67252013 67252332 -76534123 - L2 LINE L2 -128 3144 2837 524 239 245 64 chr12 67252474 67253005 -76533450 + L1MEd LINE L1 1 627 -5492 453 180 27 27 chr12 67253018 67253168 -76533287 + CT-rich Low_complexity Low_complexity 5 154 0 2239 99 7 0 chr12 67253397 67253691 -76532764 - AluSx SINE Alu -16 296 1 469 178 133 14 chr12 67254103 67254232 -76532223 + MIR SINE MIR 13 146 -62 248 366 33 42 chr12 67254451 67254587 -76531868 + MIR SINE MIR 9 144 -118 2238 117 3 0 chr12 67254587 67254894 -76531561 + AluSq SINE Alu 1 308 -5 248 366 33 42 chr12 67254894 67254970 -76531485 + MIR SINE MIR 144 219 -43 847 243 46 29 chr12 67254980 67255219 -76531236 - MIR SINE MIR -3 259 17 187 176 0 0 chr12 67255234 67255268 -76531187 + MIR SINE MIR 229 262 0 2038 141 3 0 chr12 67255957 67256256 -76530199 - AluSx SINE Alu -12 300 1 2407 77 0 3 chr12 67257395 67257695 -76528760 + AluSc SINE Alu 1 299 -10 862 123 0 0 chr12 67257696 67257818 -76528637 - L1MA8 LINE L1 -20 6271 6150 738 131 191 205 chr12 67258423 67258721 -76527734 - AluJo SINE Alu -8 294 1 2296 157 99 7 chr12 67259561 67260007 -76526448 - L1MB8 LINE L1 0 6178 5692 449 295 128 17 chr12 67262508 67262742 -76523713 - MIR SINE MIR 0 262 3 605 216 10 73 chr12 67263811 67264015 -76522440 + MLT1D LTR MaLR 315 505 0 627 239 34 39 chr12 67264051 67264256 -76522199 - MER3 DNA MER1_type -1 208 5 319 288 82 7 chr12 67264393 67264539 -76521916 - MER115 DNA AcHobo -435 258 102 590 306 66 28 chr12 67264635 67264955 -76521500 - L2 LINE L2 -12 3301 2970 1478 207 0 10 chr12 67265387 67265682 -76520773 - AluSx SINE Alu -20 292 1 1373 186 42 14 chr12 67265717 67266028 -76520427 + MER33 DNA MER1_type 1 302 -22 2035 143 77 8 chr12 67266388 67266753 -76519702 - L1MA5 LINE L1 0 6300 5911 664 230 69 17 chr12 67267072 67267246 -76519209 + MIR SINE MIR 60 242 -20 300 261 23 23 chr12 67267666 67267754 -76518701 - MIR SINE MIR -99 163 76 476 294 57 45 chr12 67268221 67268398 -76518057 + MIR SINE MIR 20 198 -64 22 80 0 0 chr12 67268718 67268768 -76517687 + AT_rich Low_complexity Low_complexity 1 50 0 650 204 0 9 chr12 67268774 67268887 -76517568 + FLAM_C SINE Alu 2 113 -30 24 0 0 0 chr12 67268915 67268939 -76517516 + AT_rich Low_complexity Low_complexity 1 24 0 2418 94 0 3 chr12 67269063 67269370 -76517085 - AluSq SINE Alu -7 306 1 2021 129 38 0 chr12 67270073 67270360 -76516095 + AluSx SINE Alu 1 298 -14 26 50 0 0 chr12 67270545 67270585 -76515870 + AT_rich Low_complexity Low_complexity 1 40 0 2040 123 13 7 chr12 67270778 67271080 -76515375 - AluSx SINE Alu -8 304 1 217 317 58 48 chr12 67271925 67272029 -76514426 - L2 LINE L2 -5 3267 3163 297 354 114 6 chr12 67272102 67272260 -76514195 - MIR SINE MIR -81 181 7 613 236 24 0 chr12 67272888 67273015 -76513440 - MLT1A2 LTR MaLR -242 132 3 956 246 103 45 chr12 67273123 67273549 -76512906 + MLT1D LTR MaLR 30 480 -25 553 152 0 152 chr12 67274640 67274871 -76511584 - MER57A LTR ERV1 -207 196 1 1643 121 8 0 chr12 67275273 67275512 -76510943 - AluY SINE Alu 0 311 71 508 239 117 59 chr12 67275818 67276040 -76510415 + MIR SINE MIR 15 249 -13 311 297 76 17 chr12 67276458 67276576 -76509879 - Charlie8 DNA MER1_type -2284 133 9 1360 153 168 37 chr12 67278889 67279157 -76507298 + AluJb SINE Alu 1 303 -9 318 328 25 42 chr12 67279384 67279503 -76506952 - L2 LINE L2 -2 3270 3154 891 114 0 8 chr12 67280359 67280482 -76505973 + AluJb SINE Alu 5 126 -186 685 230 80 52 chr12 67280596 67280809 -76505646 - MIR SINE MIR 0 262 44 21 0 0 0 chr12 67281383 67281404 -76505051 + AT_rich Low_complexity Low_complexity 1 21 0 297 169 39 52 chr12 67281438 67281515 -76504940 - L1MC5 LINE L1 -45 7916 7841 829 160 23 0 chr12 67281520 67281685 -76504770 - AluSc SINE Alu 0 313 146 1048 98 0 0 chr12 67281735 67281868 -76504587 - AluSq/x SINE Alu -179 133 1 562 146 0 58 chr12 67281870 67281973 -76504482 - AluSg/x SINE Alu -4 308 212 1525 156 11 14 chr12 67281973 67282256 -76504199 - AluSg SINE Alu -28 282 1 1051 226 60 69 chr12 67282460 67282809 -76503646 + MLT1J LTR MaLR 1 346 -165 1668 176 13 23 chr12 67282974 67283276 -76503179 + AluJo SINE Alu 1 299 -13 22 35 0 0 chr12 67283398 67283427 -76503028 + AT_rich Low_complexity Low_complexity 1 29 0 436 270 57 25 chr12 67283487 67283646 -76502809 + MER117 DNA MER1_type 14 177 -20 1386 205 29 16 chr12 67284273 67284580 -76501875 - L1ME1 LINE L1 -74 6092 5782 2499 57 3 13 chr12 67284624 67284938 -76501517 - AluY SINE Alu 0 311 1 445 202 0 0 chr12 67285191 67285275 -76501180 - AluJ/FRAM SINE Alu -2 310 227 1879 152 22 46 chr12 67285275 67285580 -76500875 - L1ME1 LINE L1 -579 5605 5311 2291 105 0 10 chr12 67285580 67285893 -76500562 + AluSq SINE Alu 1 310 -3 1879 152 22 46 chr12 67285893 67286082 -76500373 - L1ME1 LINE L1 -873 5311 5119 2401 96 0 0 chr12 67288418 67288720 -76497735 + AluSq SINE Alu 10 311 -2 1163 293 41 41 chr12 67288749 67289217 -76497238 - MLT1J LTR MaLR -41 470 3 852 250 69 22 chr12 67289218 67289450 -76497005 - MIR SINE MIR -3 259 17 302 345 11 0 chr12 67289871 67289958 -76496497 + MIR SINE MIR 32 119 -89 2174 220 64 28 chr12 67289961 67290462 -76495993 - MLT2B1 LTR ERVL 0 520 2 369 188 248 0 chr12 67290504 67290605 -76495850 + MIR SINE MIR 52 177 -85 447 280 57 6 chr12 67290636 67290811 -76495644 - L2 LINE L2 -24 3289 3106 347 250 0 0 chr12 67290806 67290878 -76495577 + MIR SINE MIR 189 260 -2 * 198 0 0 0 chr12 67291054 67291076 -76495379 + (A)n Simple_repeat Simple_repeat 1 22 0 1606 169 9 47 chr12 67291998 67292317 -76494138 + AluJb SINE Alu 1 307 -5 2249 114 80 9 chr12 67292485 67292835 -76493620 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr12 67292995 67293032 -76493423 + AT_rich Low_complexity Low_complexity 1 37 0 2103 122 3 0 chr12 67294436 67294732 -76491723 + AluSx SINE Alu 3 299 -13 334 276 57 38 chr12 67294742 67294847 -76491608 - MIR SINE MIR -57 151 45 553 161 381 6 chr12 67294983 67295151 -76491304 - MIR SINE MIR -29 233 3 1701 196 25 11 chr12 67296343 67296701 -76489754 - MLT1A1 LTR MaLR -2 363 1 268 247 27 93 chr12 67296740 67296934 -76489521 - MIR SINE MIR -12 250 35 220 224 41 0 chr12 67296945 67296994 -76489461 + L3 LINE CR1 1389 1439 -138 1701 196 25 11 chr12 67297790 67298148 -76488307 - MLT1A1 LTR MaLR -2 363 1 268 247 27 93 chr12 67298187 67298381 -76488074 - MIR SINE MIR -12 250 35 220 224 41 0 chr12 67298392 67298441 -76488014 + L3 LINE CR1 1389 1439 -138 300 330 161 0 chr12 67298938 67299056 -76487399 - Charlie8 DNA MER1_type -2144 273 137 28 29 0 0 chr12 67299067 67299102 -76487353 + AT_rich Low_complexity Low_complexity 1 35 0 2315 96 0 3 chr12 67299108 67299400 -76487055 - AluSx SINE Alu -17 295 5 600 116 0 0 chr12 67299498 67299584 -76486871 + AluJ/FLAM SINE Alu 2 87 -225 347 259 23 17 chr12 67299661 67299835 -76486620 + CT-rich Low_complexity Low_complexity 3 177 0 453 271 0 17 chr12 67299842 67300023 -76486432 + C-rich Low_complexity Low_complexity 1 178 0 297 311 0 17 chr12 67300063 67300243 -76486212 + CT-rich Low_complexity Low_complexity 3 179 0 1948 106 9 56 chr12 67300391 67300713 -76485742 - AluSx SINE Alu -5 307 1 447 275 99 45 chr12 67300716 67300938 -76485517 - MIR SINE MIR -18 244 11 21 36 0 0 chr12 67302465 67302493 -76483962 + AT_rich Low_complexity Low_complexity 1 28 0 27272 42 38 9 chr12 67302944 67306411 -76480044 + L1P LINE L1 196 3764 -2382 1806 115 4 0 chr12 67306533 67306777 -76479678 - AluSg SINE Alu -64 246 2 2583 69 0 0 chr12 67307170 67307474 -76478981 + AluY SINE Alu 1 304 -7 1450 141 89 30 chr12 67307539 67307808 -76478647 + AluJo SINE Alu 1 285 -27 3095 153 50 114 chr12 67307833 67308668 -76477787 + L1MB2 LINE L1 5390 6171 0 1240 81 47 0 chr12 67309230 67309402 -76477053 + AluY SINE Alu 128 307 -4 1310 109 20 5 chr12 67310000 67310201 -76476254 + L1P LINE L1 5128 5331 -815 2064 134 3 0 chr12 67310201 67310518 -76475937 + AluSx SINE Alu 1 318 0 199 271 68 60 chr12 67310726 67310859 -76475596 + MIR SINE MIR 73 206 -56 301 208 42 0 chr12 67310884 67310956 -76475499 - MER116 DNA Mariner 0 80 6 453 319 141 4 chr12 67311227 67311490 -76474965 + L2 LINE L2 2376 2674 -640 2377 91 0 0 chr12 67311555 67311851 -76474604 - AluSq SINE Alu -17 296 1 25 0 0 0 chr12 67311851 67311876 -76474579 + AT_rich Low_complexity Low_complexity 1 25 0 385 313 117 6 chr12 67311946 67312109 -76474346 + MER5A DNA MER1_type 9 189 0 852 223 0 18 chr12 67312121 67312287 -76474168 - AluSg/x SINE Alu -25 287 125 213 146 0 0 chr12 67312288 67312336 -76474119 + (TA)n Simple_repeat Simple_repeat 1 48 0 825 148 8 0 chr12 67312336 67312464 -76473991 - AluJb SINE Alu -183 129 1 191 61 30 0 chr12 67312489 67312522 -76473933 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 267 290 54 32 chr12 67312530 67312623 -76473832 + MER5A DNA MER1_type 71 165 -24 452 19 0 0 chr12 67313165 67313219 -76473236 - MLT2A2 LTR ERVL -399 54 1 12931 79 24 4 chr12 67313219 67313630 -76472825 - HERVL-A2 LTR ERVL 0 5654 5252 297 0 0 0 chr12 67313630 67313663 -76472792 + (TTG)n Simple_repeat Simple_repeat 2 34 0 12931 79 24 4 chr12 67313663 67314954 -76471501 - HERVL-A2 LTR ERVL -402 5252 3919 22 35 0 0 chr12 67315066 67315095 -76471360 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 67315259 67315281 -76471174 + AT_rich Low_complexity Low_complexity 1 22 0 24 39 0 0 chr12 67315304 67315330 -76471125 + GC_rich Low_complexity Low_complexity 1 26 0 739 165 0 23 chr12 67316071 67316204 -76470251 + FLAM_A SINE Alu 2 131 -2 181 271 0 0 chr12 67318056 67318104 -76468351 - L3 LINE CR1 -903 674 627 187 250 0 26 chr12 67318358 67318434 -76468021 + T-rich Low_complexity Low_complexity 3 76 0 350 291 143 5 chr12 67319488 67319684 -76466771 - MIR SINE MIR -26 236 14 41 58 0 0 chr12 67319698 67319767 -76466688 + AT_rich Low_complexity Low_complexity 1 69 0 1896 125 12 35 chr12 67319767 67320086 -76466369 - AluSx SINE Alu 0 312 1 2196 102 0 0 chr12 67320096 67320419 -76466036 - AluSg SINE Alu 0 323 1 625 89 22 0 chr12 67321052 67321142 -76465313 + L1PB2 LINE L1 6053 6144 -7 180 0 0 0 chr12 67322396 67322416 -76464039 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1387 201 52 3 chr12 67322508 67322797 -76463658 - MER58B DNA MER1_type -1 340 38 2094 157 58 2 chr12 67322797 67323193 -76463262 + L1MB8 LINE L1 5412 5829 -349 * 6237 145 24 16 chr12 67323187 67325012 -76461443 + L1PB1 LINE L1 4126 5968 -183 2143 107 7 0 chr12 67325012 67325336 -76461119 + AluSq SINE Alu 1 326 0 6237 145 24 16 chr12 67325336 67325522 -76460933 + L1PB1 LINE L1 5968 6151 0 1881 115 107 18 chr12 67325538 67325876 -76460579 + L1MB8 LINE L1 5811 6178 0 2036 162 28 17 chr12 67326329 67326688 -76459767 - MLT1A1 LTR MaLR 0 365 3 480 274 9 0 chr12 67326868 67326981 -76459474 - L2 LINE L2 -3 3310 3197 2131 126 0 17 chr12 67326981 67327283 -76459172 - AluSx SINE Alu -15 297 1 416 63 16 0 chr12 67327486 67327549 -76458906 + L1PA2 LINE L1 6088 6151 -4 772 167 15 8 chr12 67327615 67327795 -76458660 - FLAM_A SINE Alu 0 181 1 376 336 70 16 chr12 67327848 67328092 -76458363 + L2 LINE L2 2700 2956 -358 436 284 20 7 chr12 67328215 67328363 -76458092 + L2 LINE L2 3149 3298 -15 2286 101 9 28 chr12 67329734 67330051 -76456404 - AluSx SINE Alu -1 311 1 289 236 79 91 chr12 67330073 67330238 -76456217 - MARNA DNA Mariner -62 524 362 1520 123 5 14 chr12 67330263 67330475 -76455980 - AluSg SINE Alu -100 210 1 448 268 277 38 chr12 67330573 67330887 -76455568 + L2 LINE L2 2925 3313 0 301 324 141 30 chr12 67330935 67331410 -76455045 - L2 LINE L2 -557 2757 2230 205 244 0 0 chr12 67331537 67331578 -76454877 - MIR SINE MIR -6 256 216 * 218 227 0 0 chr12 67331544 67331588 -76454867 - L2 LINE L2 -19 3294 3251 184 309 0 0 chr12 67331639 67331681 -76454774 - MIR SINE MIR -86 122 81 1817 168 10 3 chr12 67331956 67332265 -76454190 - AluJb SINE Alu -1 311 1 717 223 60 101 chr12 67332287 67332337 -76454118 - L1MC4 LINE L1 0 8042 7992 2984 128 39 64 chr12 67332337 67332931 -76453524 + L1MB8 LINE L1 5600 6178 0 717 223 60 101 chr12 67332931 67333248 -76453207 - L1MC4 LINE L1 -50 7992 7690 2032 109 20 14 chr12 67333439 67333733 -76452722 - AluSx SINE Alu -16 296 1 24 32 0 0 chr12 67333797 67333828 -76452627 + AT_rich Low_complexity Low_complexity 1 31 0 207 182 0 0 chr12 67334190 67334223 -76452232 + (TG)n Simple_repeat Simple_repeat 2 34 0 1517 199 0 4 chr12 67334281 67334557 -76451898 - AluJb SINE Alu -18 294 20 265 93 23 23 chr12 67334557 67334600 -76451855 - AluJb SINE Alu -259 43 1 2226 111 0 3 chr12 67335470 67335767 -76450688 - AluSq SINE Alu -17 296 1 30 77 0 0 chr12 67335832 67335897 -76450558 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr12 67336286 67336314 -76450141 + AT_rich Low_complexity Low_complexity 1 28 0 1959 125 4 0 chr12 67336761 67337033 -76449422 + AluSx SINE Alu 1 273 -39 255 235 209 26 chr12 67337517 67337632 -76448823 - MLT1H LTR MaLR -381 168 33 2416 160 27 7 chr12 67337696 67337744 -76448711 - L1MB2 LINE L1 0 6180 6134 1901 150 13 0 chr12 67337744 67338044 -76448411 - AluJb SINE Alu -7 305 2 2416 160 27 7 chr12 67338044 67338456 -76447999 - L1MB2 LINE L1 -46 6134 5718 266 116 0 0 chr12 67338720 67338763 -76447692 - L1MB4 LINE L1 -2 6178 6136 * 458 165 7 7 chr12 67338733 67338827 -76447628 + L1PA8A LINE L1 6026 6098 -33 1242 211 0 4 chr12 67338849 67339081 -76447374 + AluJo SINE Alu 1 231 -81 210 71 0 0 chr12 67339098 67339126 -76447329 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 399 113 0 0 chr12 67339267 67339329 -76447126 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 917 168 6 0 chr12 67339333 67339512 -76446943 + CT-rich Low_complexity Low_complexity 1 180 0 555 130 0 0 chr12 67340253 67340330 -76446125 - U6 snRNA snRNA -28 79 3 1569 159 45 35 chr12 67340331 67340621 -76445834 - AluJb SINE Alu -19 293 1 2316 93 12 15 chr12 67340741 67341075 -76445380 - L1PA10 LINE L1 -1 6167 5835 644 71 12 0 chr12 67341075 67341159 -76445296 - L1PA10 LINE L1 -249 5919 5835 * 1001 62 7 55 chr12 67341156 67341301 -76445154 - L1PA11 LINE L1 -252 5922 5785 2068 140 0 0 chr12 67342327 67342620 -76443835 - AluSx SINE Alu -19 293 1 273 226 43 102 chr12 67342938 67343124 -76443331 + AluSq SINE Alu 38 212 -91 1331 103 17 0 chr12 67343402 67343576 -76442879 - AluSx SINE Alu -135 177 1 966 195 12 0 chr12 67343928 67344097 -76442358 - FAM SINE Alu -3 172 2 569 154 154 6 chr12 67344191 67344366 -76442089 + AluSx SINE Alu 6 206 -106 1006 205 5 15 chr12 67344686 67344891 -76441564 - AluJo SINE Alu -109 203 1 458 165 7 7 chr12 67344913 67345007 -76441448 - L1PA8A LINE L1 -33 6098 6026 266 116 0 0 chr12 67344977 67345020 -76441435 + L1MB4 LINE L1 6136 6178 -2 * 2314 163 26 7 chr12 67345282 67345699 -76440756 + L1MB2 LINE L1 5718 6142 -29 571 238 26 48 chr12 67345699 67345926 -76440529 + AluJb SINE Alu 5 226 -86 25 0 0 0 chr12 67345974 67345999 -76440456 + AT_rich Low_complexity Low_complexity 1 25 0 1246 131 10 5 chr12 67346474 67346680 -76439775 - L1MA4 LINE L1 -236 6064 5858 * 1469 108 5 5 chr12 67346678 67346891 -76439564 + L1MA4 LINE L1 5633 5845 -455 23 54 0 0 chr12 67347092 67347129 -76439326 + GC_rich Low_complexity Low_complexity 1 37 0 1509 93 18 9 chr12 67347661 67347886 -76438569 + L1PA10 LINE L1 5105 5331 -815 1658 136 4 0 chr12 67347886 67348121 -76438334 + AluSx SINE Alu 1 236 -76 2061 102 51 7 chr12 67348648 67348941 -76437514 + AluSx SINE Alu 1 306 -6 5225 94 7 4 chr12 67349824 67350525 -76435930 + L1PA10 LINE L1 5466 6168 0 26 30 0 0 chr12 67350660 67350693 -76435762 + AT_rich Low_complexity Low_complexity 1 33 0 2071 121 17 7 chr12 67350728 67351026 -76435429 + AluSx SINE Alu 1 301 -11 2305 100 3 0 chr12 67351027 67351326 -76435129 + AluSp SINE Alu 1 300 -13 1704 174 3 32 chr12 67351669 67351979 -76434476 + AluSx SINE Alu 1 301 -11 1942 89 4 0 chr12 67352156 67352402 -76434053 - AluSx SINE Alu -65 247 1 280 287 120 40 chr12 67353658 67353808 -76432647 + MLT1K LTR MaLR 427 588 0 250 252 10 48 chr12 67353809 67353912 -76432543 + L1ME4a LINE L1 5986 6084 -37 551 306 18 36 chr12 67354677 67354896 -76431559 - LTR67 LTR ERVL -8 549 335 186 43 0 0 chr12 67354925 67354948 -76431507 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 443 214 13 19 chr12 67354997 67355151 -76431304 + GA-rich Low_complexity Low_complexity 4 156 0 268 194 161 0 chr12 67355483 67355545 -76430910 - Charlie8 DNA MER1_type -2237 180 109 2054 176 15 50 chr12 67355948 67356352 -76430103 + MLT1B LTR MaLR 1 390 0 2259 117 0 0 chr12 67356835 67357143 -76429312 + AluSq SINE Alu 1 308 -5 275 176 0 0 chr12 67357143 67357194 -76429261 + L1MC4 LINE L1 6653 6703 -1339 268 275 0 22 chr12 67357157 67357248 -76429207 - L1MC4 LINE L1 -1340 6702 6614 * 2084 138 0 0 chr12 67358446 67358737 -76427718 + AluSx SINE Alu 1 291 -21 182 88 0 29 chr12 67358863 67358897 -76427558 + (ATG)n Simple_repeat Simple_repeat 2 34 0 773 195 0 0 chr12 67358908 67359026 -76427429 - FLAM_A SINE Alu -13 120 3 368 238 133 0 chr12 67359450 67359555 -76426900 - L2 LINE L2 -1 3312 3194 301 293 55 95 chr12 67359671 67360071 -76426384 - L2 LINE L2 -23 3249 2866 187 250 0 26 chr12 67361299 67361375 -76425080 + A-rich Low_complexity Low_complexity 3 76 0 194 271 0 0 chr12 67361629 67361677 -76424778 + L3 LINE CR1 627 674 -903 198 296 0 19 chr12 67361938 67361992 -76424463 - L2 LINE L2 -86 3186 3134 2220 92 6 22 chr12 67362303 67362617 -76423838 - AluSq SINE Alu -3 310 2 544 239 174 0 chr12 67362625 67362780 -76423675 + MER5A DNA MER1_type 5 186 -3 654 144 17 34 chr12 67362807 67362925 -76423530 + Charlie4a DNA MER1_type 39 154 -354 * 738 200 83 46 chr12 67362903 67363143 -76423312 + Charlie4a DNA MER1_type 259 507 -1 1507 162 29 29 chr12 67365130 67365402 -76421053 - AluJb SINE Alu -40 272 1 577 270 89 60 chr12 67367252 67367496 -76418959 + Charlie2 DNA MER1_type 8 258 -2524 935 216 86 136 chr12 67367496 67367799 -76418656 + LTR40a LTR ERVL 1 267 -252 2518 54 0 3 chr12 67367799 67368095 -76418360 + AluY SINE Alu 1 295 -16 935 216 86 136 chr12 67368095 67368337 -76418118 + LTR40a LTR ERVL 267 519 0 2241 96 7 3 chr12 67368468 67368769 -76417686 - AluSx SINE Alu -10 302 1 23 33 0 0 chr12 67368774 67368804 -76417651 + AT_rich Low_complexity Low_complexity 1 30 0 1144 216 118 16 chr12 67368816 67369256 -76417199 + Charlie2 DNA MER1_type 2377 2861 -1 2052 90 8 0 chr12 67370790 67371056 -76415399 + AluSx SINE Alu 1 268 -44 288 157 12 48 chr12 67371075 67371158 -76415297 + GA-rich Low_complexity Low_complexity 1 80 0 891 158 47 64 chr12 67371363 67371420 -76415035 + L1MC5 LINE L1 6981 7037 -924 2220 105 0 19 chr12 67371420 67371735 -76414720 + AluSc SINE Alu 1 309 0 891 158 47 64 chr12 67371735 67371911 -76414544 + L1MC5 LINE L1 7037 7210 -751 342 256 186 0 chr12 67371922 67372094 -76414361 + L1MC5 LINE L1 7248 7451 -510 1061 247 40 35 chr12 67372155 67372531 -76413924 + L1M4 LINE L1 2226 2603 -3543 265 237 62 37 chr12 67372787 67372922 -76413533 - MIR SINE MIR -36 226 92 1543 140 108 28 chr12 67373035 67373321 -76413134 + AluJo SINE Alu 2 310 -2 1608 161 109 0 chr12 67374338 67374612 -76411843 + AluJb SINE Alu 1 304 -8 2074 126 3 3 chr12 67374670 67374971 -76411484 - AluSx SINE Alu -11 301 1 1461 173 104 0 chr12 67377483 67377761 -76408694 - AluJo SINE Alu -5 307 1 252 215 154 0 chr12 67377921 67377986 -76408469 - MIR SINE MIR -59 203 129 43935 31 21 1 chr12 67378134 67384165 -76402290 + L1PA2 LINE L1 1 6155 0 1312 122 0 25 chr12 67384191 67384387 -76402068 + AluSg/x SINE Alu 85 275 -37 216 0 0 0 chr12 67384391 67384415 -76402040 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 283 320 33 8 chr12 67384438 67384560 -76401895 + L2 LINE L2 2738 2862 -452 1520 167 45 28 chr12 67384670 67384958 -76401497 + AluJb SINE Alu 2 294 -18 379 209 173 0 chr12 67384959 67385069 -76401386 + MER112 DNA MER1_type 17 145 -115 49 66 0 0 chr12 67385150 67385241 -76401214 + AT_rich Low_complexity Low_complexity 1 91 0 186 294 15 15 chr12 67386053 67386121 -76400334 - MIR SINE MIR -13 249 182 2476 87 0 56 chr12 67386452 67386598 -76399857 + L1PA10 LINE L1 5785 5938 -230 2476 92 9 15 chr12 67386598 67386930 -76399525 + L1PA10 LINE L1 5835 6167 -1 2476 87 0 56 chr12 67386930 67386949 -76399506 + L1PA10 LINE L1 5938 6167 -1 1553 159 45 35 chr12 67387050 67387340 -76399115 + AluJb SINE Alu 1 293 -19 557 130 0 0 chr12 67387341 67387418 -76399037 + U6 snRNA snRNA 3 79 -28 929 168 6 0 chr12 67388159 67388338 -76398117 + GA-rich Low_complexity Low_complexity 1 180 0 210 71 0 0 chr12 67388489 67388517 -76397938 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 985 219 17 13 chr12 67388531 67388764 -76397691 - AluJo SINE Alu -78 234 1 456 165 7 7 chr12 67388786 67388880 -76397575 - L1PA8A LINE L1 -33 6098 6026 273 116 0 0 chr12 67388850 67388893 -76397562 + L1MB4 LINE L1 6136 6178 -2 * 182 263 66 53 chr12 67389074 67389150 -76397305 - L2 LINE L2 -188 3084 3008 2436 160 27 7 chr12 67389157 67389569 -76396886 + L1MB2 LINE L1 5718 6134 -46 1936 143 13 0 chr12 67389569 67389870 -76396585 + AluJb SINE Alu 2 306 -6 2436 160 27 7 chr12 67389870 67389918 -76396537 + L1MB2 LINE L1 6134 6180 0 254 235 209 26 chr12 67389982 67390097 -76396358 + MLT1H LTR MaLR 33 168 -381 1933 125 4 0 chr12 67390581 67390853 -76395602 - AluSx SINE Alu -39 273 1 21 36 0 0 chr12 67391300 67391328 -76395127 + AT_rich Low_complexity Low_complexity 1 28 0 30 77 0 0 chr12 67391716 67391781 -76394674 + AT_rich Low_complexity Low_complexity 1 65 0 2212 111 0 3 chr12 67391846 67392143 -76394312 + AluSq SINE Alu 1 296 -17 260 93 23 23 chr12 67393013 67393056 -76393399 + AluJb SINE Alu 1 43 -259 1503 199 0 4 chr12 67393056 67393332 -76393123 + AluJb SINE Alu 20 294 -18 207 182 0 0 chr12 67393390 67393423 -76393032 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 32 0 0 chr12 67393785 67393816 -76392639 + AT_rich Low_complexity Low_complexity 1 31 0 2140 115 10 10 chr12 67393880 67394176 -76392279 + AluSx SINE Alu 1 296 -16 734 222 60 105 chr12 67394368 67394685 -76391770 + L1MC4 LINE L1 7690 7989 -53 3119 128 39 64 chr12 67394685 67395277 -76391178 - L1MB8 LINE L1 0 6178 5602 734 222 60 105 chr12 67395277 67395329 -76391126 + L1MC4 LINE L1 7989 8042 0 1807 168 10 3 chr12 67395351 67395660 -76390795 + AluJb SINE Alu 1 311 -1 234 255 0 0 chr12 67396028 67396075 -76390380 + L2 LINE L2 3210 3256 -16 434 324 137 30 chr12 67396206 67396697 -76389758 + L2 LINE L2 2230 2772 -542 535 264 277 38 chr12 67396729 67397043 -76389412 - L2 LINE L2 0 3313 2925 1561 122 0 14 chr12 67397141 67397354 -76389101 + AluSg SINE Alu 1 210 -100 1917 110 11 33 chr12 67397567 67397840 -76388615 + AluSx SINE Alu 1 267 -45 385 233 0 0 chr12 67399710 67399783 -76386672 - MER81 DNA DNA -3 111 39 293 181 56 28 chr12 67399790 67399862 -76386593 - MER81 DNA DNA -40 74 1 974 67 40 7 chr12 67399930 67400079 -76386376 + MER30 DNA MER1_type 1 154 -76 2119 111 6 16 chr12 67400079 67400394 -76386061 + AluSx SINE Alu 1 312 0 372 174 20 10 chr12 67400418 67400516 -76385939 + GA-rich Low_complexity Low_complexity 1 99 0 610 99 0 0 chr12 67400519 67400600 -76385855 + MER30 DNA MER1_type 150 230 0 235 299 56 19 chr12 67400869 67400976 -76385479 + MIR SINE MIR 34 144 -64 23 0 0 0 chr12 67401586 67401609 -76384846 + AT_rich Low_complexity Low_complexity 1 23 0 1089 118 5 86 chr12 67402143 67402364 -76384091 + L1MA9 LINE L1 6110 6312 0 21 82 0 0 chr12 67403235 67403284 -76383171 + AT_rich Low_complexity Low_complexity 1 49 0 1941 151 10 0 chr12 67405506 67405805 -76380650 - AluSx SINE Alu -10 302 1 1840 135 3 69 chr12 67406297 67406631 -76379824 - AluSx SINE Alu 0 312 1 2264 91 3 16 chr12 67406641 67406950 -76379505 - AluSp SINE Alu -8 305 1 889 42 68 0 chr12 67407416 67407534 -76378921 + L1PA7 LINE L1 6028 6153 -1 281 187 98 0 chr12 67407626 67407758 -76378697 + L1ME LINE L1 5328 5471 -650 1370 120 23 5 chr12 67407769 67407986 -76378469 - L1PB2 LINE L1 -3 6148 5928 6144 173 93 23 chr12 67408021 67408500 -76377955 - L1MA9 LINE L1 -298 6014 5570 824 143 15 15 chr12 67408500 67408633 -76377822 - FLAM_C SINE Alu 0 133 1 6144 173 93 23 chr12 67408633 67409445 -76377010 - L1MA9 LINE L1 -742 5570 4817 2421 87 0 3 chr12 67409445 67409745 -76376710 + AluY SINE Alu 1 299 -12 6144 173 93 23 chr12 67409745 67410240 -76376215 - L1MA9 LINE L1 -1495 4817 4358 1816 197 3 0 chr12 67410240 67410545 -76375910 - AluJo SINE Alu -4 308 3 6144 173 93 23 chr12 67410545 67411085 -76375370 - L1MA9 LINE L1 -1954 4358 3510 570 197 0 8 chr12 67411118 67411235 -76375220 - U5 snRNA snRNA 0 116 1 484 214 0 0 chr12 67411237 67411349 -76375106 - L1MA9 LINE L1 -2623 3523 3412 912 132 0 0 chr12 67411564 67411693 -76374762 - FLAM_C SINE Alu -3 130 2 2028 222 79 16 chr12 67411715 67412223 -76374232 - MLT1F LTR MaLR -2 540 1 1689 163 7 21 chr12 67412555 67412838 -76373617 - AluJo SINE Alu -24 288 10 468 274 60 84 chr12 67413006 67413067 -76373388 - MIR SINE MIR -6 256 195 801 177 0 0 chr12 67413067 67413197 -76373258 - FLAM_C SINE Alu -3 130 1 468 274 60 84 chr12 67413197 67413350 -76373105 - MIR SINE MIR -67 195 47 2199 116 7 0 chr12 67413643 67413936 -76372519 - AluSx SINE Alu -17 295 1 1025 156 5 20 chr12 67414189 67414388 -76372067 - MER3 DNA MER1_type -5 204 9 265 280 0 50 chr12 67414651 67414751 -76371704 - MIR SINE MIR -3 259 165 303 160 30 80 chr12 67414785 67414885 -76371570 - L1ME4a LINE L1 -35 6086 5992 906 303 143 22 chr12 67414886 67415292 -76371163 + LTR16A LTR ERVL 3 457 0 23 33 0 0 chr12 67415338 67415368 -76371087 + AT_rich Low_complexity Low_complexity 1 30 0 1909 126 24 27 chr12 67415464 67415757 -76370698 - AluSx SINE Alu -20 292 1 4172 168 46 7 chr12 67417350 67418243 -76368212 + L1MB2 LINE L1 5182 6109 -62 2371 100 0 6 chr12 67418426 67418737 -76367718 - AluSx SINE Alu -3 309 1 576 200 91 114 chr12 67418839 67419059 -76367396 + MER58C DNA MER1_type 1 215 0 260 307 80 6 chr12 67419104 67419280 -76367175 - LTR67 LTR ERVL -17 540 352 818 268 95 17 chr12 67420169 67420400 -76366055 - MIR SINE MIR -3 259 11 203 219 0 0 chr12 67420435 67420476 -76365979 - MIR SINE MIR -33 229 189 446 304 95 0 chr12 67420546 67420694 -76365761 + MIR3 SINE MIR 44 205 -3 1846 155 0 30 chr12 67421935 67422232 -76364223 + AluJb SINE Alu 1 288 -24 1373 176 51 64 chr12 67422304 67422617 -76363838 + AluJo SINE Alu 1 309 -3 2000 164 0 0 chr12 67423713 67424012 -76362443 + AluJb SINE Alu 1 299 -13 540 205 0 17 chr12 67424154 67424271 -76362184 - FLAM_A SINE Alu -18 115 1 325 149 230 0 chr12 67424289 67424363 -76362092 + L2 LINE L2 3182 3272 0 227 355 36 100 chr12 67424374 67424588 -76361867 + L2 LINE L2 2807 2980 -292 2310 107 3 0 chr12 67424588 67424897 -76361558 + AluY SINE Alu 1 310 -1 227 355 36 100 chr12 67424897 67425121 -76361334 + L2 LINE L2 2980 3217 -55 184 278 37 0 chr12 67425214 67425268 -76361187 - L2 LINE L2 -1073 2241 2186 521 311 146 45 chr12 67426267 67426782 -76359673 - L2 LINE L2 -15 3257 2700 777 167 15 8 chr12 67426835 67427014 -76359441 + FLAM_A SINE Alu 1 180 0 319 97 16 16 chr12 67427081 67427143 -76359312 - L1PA2 LINE L1 -6 6149 6088 19175 121 9 12 chr12 67427366 67428072 -76358383 - L1PA10 LINE L1 -144 6024 5318 2029 135 4 0 chr12 67428072 67428394 -76358061 - AluSx SINE Alu 0 323 1 19175 121 9 12 chr12 67428394 67431627 -76354828 - L1PA10 LINE L1 -850 5318 2086 2342 86 10 7 chr12 67431818 67432121 -76354334 - AluY SINE Alu -7 304 1 357 173 27 13 chr12 67432170 67432245 -76354210 - LTR67 LTR ERVL 0 557 482 662 292 128 17 chr12 67432261 67432675 -76353780 + HAL1 LINE L1 3 462 -2045 475 143 0 60 chr12 67432675 67432759 -76353696 - MER1B DNA MER1_type 0 333 255 * 893 152 85 0 chr12 67432754 67432919 -76353536 - MER1B DNA MER1_type -73 224 46 2031 173 25 37 chr12 67432931 67433412 -76353043 - L1MB8 LINE L1 -5 6173 5699 1396 219 38 25 chr12 67433435 67433911 -76352544 + HAL1 LINE L1 809 1290 -1217 238 170 11 96 chr12 67433986 67434080 -76352375 + HAL1 LINE L1 1978 2063 -444 * 411 254 191 8 chr12 67434075 67434311 -76352144 + HAL1 LINE L1 1296 1574 -933 799 261 138 41 chr12 67434787 67435251 -76351204 + HAL1 LINE L1 1582 2090 -417 267 225 9 36 chr12 67435251 67435366 -76351089 - MLT1I LTR MaLR 0 409 320 1689 159 3 53 chr12 67435533 67435688 -76350767 - AluJo SINE Alu -24 288 127 216 0 0 0 chr12 67435688 67435712 -76350743 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 2115 121 3 0 chr12 67435712 67435994 -76350461 - AluSq SINE Alu -30 283 1 1689 159 3 53 chr12 67435994 67436139 -76350316 - AluJo SINE Alu -183 129 2 1843 105 0 0 chr12 67436391 67436629 -76349826 - AluSg SINE Alu -15 295 58 211 200 22 0 chr12 67436975 67437020 -76349435 - MIR SINE MIR -11 251 206 508 135 0 0 chr12 67437020 67437094 -76349361 - AluJ/FLAM SINE Alu -238 74 1 404 202 250 0 chr12 67437274 67437398 -76349057 + MLT1J2 LTR MaLR 280 434 -16 185 320 80 0 chr12 67437413 67437488 -76348967 - MIR SINE MIR -171 91 11 184 308 90 0 chr12 67438504 67438582 -76347873 - L2 LINE L2 -2 3311 3227 452 161 258 8 chr12 67438626 67438750 -76347705 - MLT1J2 LTR MaLR -16 434 280 445 266 117 63 chr12 67439019 67439241 -76347214 + MIR SINE MIR 11 244 -18 2021 113 0 55 chr12 67439244 67439572 -76346883 + AluSx SINE Alu 1 310 -2 24 67 0 0 chr12 67439572 67439617 -76346838 + AT_rich Low_complexity Low_complexity 1 45 0 984 285 106 64 chr12 67439648 67440305 -76346150 + L2 LINE L2 2005 2699 -615 3758 156 39 12 chr12 67440305 67441025 -76345430 - L1MB2 LINE L1 -7 6164 5426 984 285 106 64 chr12 67441025 67441119 -76345336 + L2 LINE L2 2699 2788 -526 1240 118 0 0 chr12 67441119 67441289 -76345166 - AluSg/x SINE Alu -13 299 130 548 305 70 92 chr12 67441306 67441765 -76344690 + L2 LINE L2 2804 3252 -61 181 322 68 72 chr12 67441799 67442035 -76344420 - L2 LINE L2 -194 3078 2844 595 236 170 5 chr12 67442247 67442459 -76343996 + MIR SINE MIR 13 259 -3 720 279 25 38 chr12 67442973 67443288 -76343167 + L1ME4a LINE L1 5516 5826 -295 1509 172 57 44 chr12 67443646 67443942 -76342513 - AluJo SINE Alu -4 308 9 276 326 12 41 chr12 67444868 67445040 -76341415 + LTR67 LTR ERVL 59 225 -332 281 286 0 31 chr12 67445092 67445190 -76341265 + LTR67 LTR ERVL 356 450 -107 859 254 79 18 chr12 67445476 67445818 -76340637 + L1ME3A LINE L1 5736 6098 -72 2118 125 6 13 chr12 67446020 67446332 -76340123 + AluSx SINE Alu 1 310 -2 2299 84 47 0 chr12 67449473 67449771 -76336684 + AluSx SINE Alu 1 312 0 203 324 149 62 chr12 67449916 67450362 -76336093 + L3 LINE CR1 153 651 -926 189 0 0 0 chr12 67450362 67450383 -76336072 + (CAA)n Simple_repeat Simple_repeat 1 21 0 203 324 149 62 chr12 67450383 67450452 -76336003 + L3 LINE CR1 651 713 -864 794 165 0 23 chr12 67450822 67450955 -76335500 - FLAM_A SINE Alu -2 131 2 1453 136 12 130 chr12 67452616 67452940 -76333515 - AluJo SINE Alu -18 294 9 2324 72 0 0 chr12 67453039 67453318 -76333137 - AluSg SINE Alu -31 279 1 6907 14 0 1 chr12 67453335 67454072 -76332383 - L1PA2 LINE L1 0 6155 5420 8997 22 0 1 chr12 67454072 67455157 -76331298 + L1P LINE L1 4346 5429 -726 192 57 86 0 chr12 67455247 67455282 -76331173 - L2 LINE L2 0 3313 3276 1650 245 83 43 chr12 67455347 67456006 -76330449 + MER20B DNA MER1_type 1 693 -90 916 151 48 48 chr12 67456006 67456172 -76330283 + FRAM SINE Alu 1 166 0 1650 245 83 43 chr12 67456172 67456234 -76330221 + MER20B DNA MER1_type 693 751 -32 2040 154 35 30 chr12 67456237 67456633 -76329822 + L1MB2 LINE L1 5744 6141 -30 36 0 0 0 chr12 67456633 67456669 -76329786 + AT_rich Low_complexity Low_complexity 1 36 0 292 275 101 18 chr12 67456847 67456956 -76329499 + L2 LINE L2 3194 3311 -2 2086 127 0 17 chr12 67457338 67457638 -76328817 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 67457640 67457668 -76328787 + AT_rich Low_complexity Low_complexity 1 28 0 858 189 0 0 chr12 67458249 67458392 -76328063 - FRAM SINE Alu -26 150 8 3287 86 42 5 chr12 67458398 67458826 -76327629 + MLT2A1 LTR ERVL 1 444 0 44819 61 19 12 chr12 67458826 67460184 -76326271 + HERVL-A1-A1 LTR ERVL 1 1348 -4306 2399 91 0 0 chr12 67460184 67460480 -76325975 - AluY SINE Alu -15 296 1 44819 61 19 12 chr12 67460480 67462436 -76324019 + HERVL-A1-A1 LTR ERVL 1348 3288 -2366 2134 121 3 0 chr12 67462436 67462725 -76323730 - AluSg SINE Alu -20 290 1 44819 61 19 12 chr12 67462725 67464611 -76321844 + HERVL-A1-A1 LTR ERVL 3288 5247 -407 297 0 0 0 chr12 67464611 67464644 -76321811 + (CAA)n Simple_repeat Simple_repeat 2 34 0 44819 61 19 12 chr12 67464644 67465055 -76321400 + HERVL-A1-A1 LTR ERVL 5247 5654 0 3295 86 16 5 chr12 67465055 67465486 -76320969 + MLT2A1 LTR ERVL 1 436 -8 816 181 8 0 chr12 67465510 67465637 -76320818 - FLAM_C SINE Alu -5 128 1 550 159 0 11 chr12 67465924 67466012 -76320443 + Tigger7 DNA MER2_type 2401 2487 0 282 246 53 47 chr12 67467177 67467348 -76319107 - L1ME4a LINE L1 0 6121 5950 228 278 8 32 chr12 67467355 67467387 -76319068 + (TA)n Simple_repeat Simple_repeat 2 33 -91 2548 122 3 17 chr12 67467387 67467740 -76318715 - MER7A DNA MER2_type 0 346 1 228 278 8 32 chr12 67467740 67467833 -76318622 + (TA)n Simple_repeat Simple_repeat 33 124 0 309 176 59 0 chr12 67467957 67468025 -76318430 - L1ME4a LINE L1 -224 5897 5826 2585 191 24 2 chr12 67469357 67469848 -76316607 + L1MD2 LINE L1 5858 6359 0 708 134 0 50 chr12 67470552 67470671 -76315784 - FLAM_C SINE Alu -11 132 20 765 164 0 16 chr12 67470809 67470931 -76315524 + FLAM_C SINE Alu 2 121 -22 396 0 0 0 chr12 67470931 67470975 -76315480 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 855 197 7 0 chr12 67471260 67471402 -76315053 - FRAM SINE Alu -17 159 17 2152 119 0 0 chr12 67471708 67472001 -76314454 - AluSc SINE Alu -16 293 1 898 158 0 0 chr12 67473064 67473197 -76313258 + FLAM_C SINE Alu 1 133 0 1957 130 23 7 chr12 67473311 67473611 -76312844 + AluJo SINE Alu 1 305 -7 429 272 50 63 chr12 67473623 67473862 -76312593 + L1ME3A LINE L1 5 240 -5879 580 276 88 0 chr12 67474154 67474324 -76312131 + L1ME3A LINE L1 463 647 -5472 251 247 157 34 chr12 67474347 67474548 -76311907 + L1ME3A LINE L1 699 942 -5177 2299 114 7 0 chr12 67474548 67474856 -76311599 + AluSq SINE Alu 1 310 -3 251 247 157 34 chr12 67474856 67474921 -76311534 + L1ME3A LINE L1 942 998 -5121 284 271 66 0 chr12 67474926 67475048 -76311407 + L1ME3A LINE L1 2946 3075 -3054 * 993 256 119 50 chr12 67475024 67475612 -76310843 + L1ME3A LINE L1 4404 5036 -1093 * 4132 166 23 29 chr12 67475589 67475612 -76310843 + L1MB1 LINE L1 5328 5350 -818 1761 128 64 0 chr12 67475612 67475908 -76310547 + AluSx SINE Alu 1 313 0 4132 166 23 29 chr12 67475908 67476060 -76310395 + L1MB1 LINE L1 5350 5501 -667 1843 168 26 0 chr12 67476060 67476364 -76310091 + AluJb SINE Alu 1 312 0 4132 166 23 29 chr12 67476364 67476980 -76309475 + L1MB1 LINE L1 5501 6116 -52 643 279 30 8 chr12 67477006 67477268 -76309187 + L1ME3A LINE L1 5025 5292 -837 320 224 12 12 chr12 67477284 67477369 -76309086 + L1ME3A LINE L1 5268 5352 -801 1851 197 107 11 chr12 67477369 67477810 -76308645 + MER74A LTR ERVL 3 485 -73 826 263 132 51 chr12 67477814 67478285 -76308170 + L1ME3A LINE L1 5555 6063 -90 1882 148 3 28 chr12 67478330 67478647 -76307808 - AluJo SINE Alu -3 309 1 1827 173 0 3 chr12 67478853 67479142 -76307313 - AluJb SINE Alu -24 288 1 773 188 151 69 chr12 67479288 67479607 -76306848 + LTR37A LTR ERV1 82 426 0 2305 91 6 35 chr12 67479969 67480288 -76306167 + AluSq SINE Alu 1 310 -3 1412 130 61 0 chr12 67480964 67481194 -76305261 - L1MA4 LINE L1 -4 6296 6053 2368 98 0 0 chr12 67481196 67481493 -76304962 - AluSx SINE Alu -15 297 1 1085 175 0 0 chr12 67481493 67481664 -76304791 - FRAM SINE Alu -10 166 1 1284 125 10 0 chr12 67481664 67481864 -76304591 - L1MA4 LINE L1 -241 6059 5858 * 1495 99 5 5 chr12 67481862 67482075 -76304380 + L1MA4 LINE L1 5633 5845 -455 24 0 0 0 chr12 67482112 67482136 -76304319 + AT_rich Low_complexity Low_complexity 1 24 0 326 272 52 11 chr12 67486536 67486671 -76299784 - MIR SINE MIR -62 146 26 354 106 85 8 chr12 67487237 67487330 -76299125 - MER5B DNA MER1_type 0 178 1 192 351 85 0 chr12 67488026 67488120 -76298335 - MIR SINE MIR -75 187 86 721 195 0 0 chr12 67488475 67488588 -76297867 + FRAM SINE Alu 42 154 -22 1906 171 0 0 chr12 67488812 67489116 -76297339 - AluSx SINE Alu -8 304 1 21 0 0 0 chr12 67489198 67489219 -76297236 + AT_rich Low_complexity Low_complexity 1 21 0 2951 131 33 37 chr12 67489228 67489738 -76296717 + L1MB3 LINE L1 5675 6182 -1 434 207 118 30 chr12 67491101 67491270 -76295185 + L1ME4a LINE L1 5656 5839 -282 1888 128 25 7 chr12 67491336 67491618 -76294837 + AluJb SINE Alu 1 287 -25 843 160 30 18 chr12 67491622 67491791 -76294664 - L1MB8 LINE L1 0 6178 6008 2255 137 18 40 chr12 67491831 67492226 -76294229 + L1MB8 LINE L1 5784 6169 -9 531 114 13 0 chr12 67492364 67492443 -76294012 - MADE1 DNA Mariner 0 80 1 317 248 14 78 chr12 67492573 67492714 -76293741 + L1ME4a LINE L1 5990 6121 0 222 37 0 0 chr12 67492988 67493015 -76293440 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 387 0 0 0 chr12 67493266 67493309 -76293146 + (CA)n Simple_repeat Simple_repeat 1 43 0 608 263 118 48 chr12 67494489 67494717 -76291738 - MIR SINE MIR -9 253 10 1057 219 26 18 chr12 67495299 67495527 -76290928 - MIR SINE MIR -17 245 16 1576 135 4 0 chr12 67495925 67496155 -76290300 - AluSg/x SINE Alu -6 306 76 200 231 125 91 chr12 67496260 67496468 -76289987 - L2 LINE L2 -622 2692 2478 28 48 0 0 chr12 67497996 67498038 -76288417 + AT_rich Low_complexity Low_complexity 1 42 0 307 284 20 47 chr12 67498583 67498701 -76287754 - MIR SINE MIR -67 141 24 861 177 6 6 chr12 67498723 67498881 -76287574 + L1MA3 LINE L1 6148 6305 0 21 0 0 0 chr12 67501354 67501375 -76285080 + AT_rich Low_complexity Low_complexity 1 21 0 450 53 0 0 chr12 67502107 67502164 -76284291 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1873 154 10 10 chr12 67503771 67504064 -76282391 - AluJo SINE Alu -19 293 1 2463 194 44 15 chr12 67505098 67505640 -76280815 - MER74A LTR ERVL 0 558 1 2302 90 10 6 chr12 67506858 67507169 -76279286 - AluSx SINE Alu 0 312 1 320 333 35 10 chr12 67508998 67509196 -76277259 - L2 LINE L2 -977 2337 2135 704 283 43 30 chr12 67509311 67509544 -76276911 - MIR SINE MIR -24 238 3 41 66 0 0 chr12 67509689 67509765 -76276690 + AT_rich Low_complexity Low_complexity 1 76 0 2119 117 13 3 chr12 67511873 67512173 -76274282 + AluSq SINE Alu 1 303 -10 189 0 0 0 chr12 67512599 67512620 -76273835 + (A)n Simple_repeat Simple_repeat 1 21 0 991 265 71 20 chr12 67512701 67513121 -76273334 - L1MC4 LINE L1 0 8042 7507 212 217 349 9 chr12 67513590 67513696 -76272759 + MIR SINE MIR 118 259 -3 26 0 0 49 chr12 67514350 67514365 -76272090 + AT_rich Low_complexity Low_complexity 1 15 -24 2338 91 0 0 chr12 67514365 67514661 -76271794 - AluSq SINE Alu -17 296 1 26 0 0 49 chr12 67514661 67514686 -76271769 + AT_rich Low_complexity Low_complexity 15 39 0 423 313 117 6 chr12 67514756 67514919 -76271536 + MER5A DNA MER1_type 9 189 0 852 223 0 18 chr12 67514931 67515097 -76271358 - AluSg/x SINE Alu -25 287 125 213 146 0 0 chr12 67515098 67515146 -76271309 + (TA)n Simple_repeat Simple_repeat 1 48 0 814 148 8 0 chr12 67515146 67515274 -76271181 - AluJb SINE Alu -183 129 1 191 61 30 0 chr12 67515299 67515332 -76271123 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 297 290 54 32 chr12 67515340 67515433 -76271022 + MER5A DNA MER1_type 71 165 -24 212 244 0 0 chr12 67515791 67515836 -76270619 - L2 LINE L2 -87 3185 3141 811 229 108 48 chr12 67515971 67516286 -76270169 - L1ME3A LINE L1 -3 6150 5817 1086 232 97 18 chr12 67516299 67516953 -76269502 - L1ME3A LINE L1 -372 5781 5015 43 56 0 0 chr12 67517113 67517184 -76269271 + AT_rich Low_complexity Low_complexity 1 71 0 447 279 85 52 chr12 67517290 67517679 -76268776 - L1MEd LINE L1 -4729 1581 1206 2167 100 14 0 chr12 67517679 67517968 -76268487 + AluSx SINE Alu 1 293 -19 447 279 85 52 chr12 67517968 67518396 -76268059 - L1MEd LINE L1 -5104 1206 715 3847 86 2 4 chr12 67519100 67519612 -76266843 + MER9 LTR ERVK 1 511 0 26 30 0 0 chr12 67519808 67519841 -76266614 + AT_rich Low_complexity Low_complexity 1 33 0 295 302 169 6 chr12 67519972 67520144 -76266311 - L2 LINE L2 -209 3063 2864 21 36 0 0 chr12 67520208 67520236 -76266219 + AT_rich Low_complexity Low_complexity 1 28 0 215 387 117 0 chr12 67520303 67520440 -76266015 - L2 LINE L2 -601 2713 2561 1298 211 109 3 chr12 67520850 67521153 -76265302 - MER2 DNA MER2_type -10 335 1 1529 145 82 110 chr12 67521845 67522246 -76264209 - MLT1B LTR MaLR 0 390 1 360 0 0 0 chr12 67522473 67522513 -76263942 + (CA)n Simple_repeat Simple_repeat 1 40 0 286 393 52 0 chr12 67523082 67523217 -76263238 + L2 LINE L2 3126 3267 -5 843 129 43 0 chr12 67524588 67524727 -76261728 + AluJo SINE Alu 1 145 -167 865 110 55 0 chr12 67524833 67524960 -76261495 + AluJb SINE Alu 168 301 -11 389 303 0 16 chr12 67525372 67525494 -76260961 - MER102a DNA MER1_type 0 330 211 28 29 0 0 chr12 67525558 67525593 -76260862 + AT_rich Low_complexity Low_complexity 1 35 0 1924 111 4 4 chr12 67525599 67525860 -76260595 - AluSx SINE Alu -17 295 35 511 204 0 0 chr12 67525957 67526050 -76260405 - FRAM SINE Alu -15 161 69 30 0 0 0 chr12 67526444 67526474 -76259981 + AT_rich Low_complexity Low_complexity 1 30 0 639 148 26 17 chr12 67526474 67526589 -76259866 - FRAM SINE Alu -25 151 36 286 255 0 66 chr12 67526694 67526800 -76259655 - MER102b DNA MER1_type -1 340 242 260 330 39 10 chr12 67527498 67527601 -76258854 + MLT1K LTR MaLR 150 255 -333 291 253 61 30 chr12 67527674 67527773 -76258682 + MLT1K LTR MaLR 375 476 -112 248 247 0 24 chr12 67528055 67528140 -76258315 - L1ME4a LINE L1 -1 6120 6038 758 151 0 24 chr12 67528178 67528304 -76258151 + FLAM_C SINE Alu 1 123 -20 760 286 68 0 chr12 67529144 67529378 -76257077 + MIR SINE MIR 2 251 -11 191 152 22 0 chr12 67529924 67529970 -76256485 + (TA)n Simple_repeat Simple_repeat 1 47 0 872 195 26 0 chr12 67530990 67531180 -76255275 + L1MB8 LINE L1 4969 5163 -983 1234 144 5 5 chr12 67531181 67531375 -76255080 + AluSg/x SINE Alu 108 301 -11 4893 163 28 16 chr12 67531376 67532364 -76254091 + L1MB8 LINE L1 5178 6176 -2 232 295 0 85 chr12 67532926 67533055 -76253400 - L2 LINE L2 0 3313 3196 289 224 17 0 chr12 67533317 67533375 -76253080 + MER5A DNA MER1_type 10 68 -121 1788 182 3 6 chr12 67533383 67533696 -76252759 + AluJb SINE Alu 1 312 0 267 133 0 0 chr12 67533696 67533741 -76252714 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 247 260 250 10 chr12 67533753 67533857 -76252598 + MER5A DNA MER1_type 61 189 0 464 200 11 11 chr12 67535503 67535593 -76250862 - Tigger5 DNA MER2_type 0 2323 2234 236 195 0 0 chr12 67535602 67535643 -76250812 - Tigger5 DNA MER2_type -2270 53 13 373 181 14 14 chr12 67535644 67535716 -76250739 - Tigger5 DNA MER2_type -1 2322 2251 314 208 0 0 chr12 67535687 67535740 -76250715 - Tigger5 DNA MER2_type -2270 53 1 * 1328 288 161 38 chr12 67536888 67537311 -76249144 - L2 LINE L2 -121 3192 2823 1473 156 13 0 chr12 67537311 67537542 -76248913 - AluSg/x SINE Alu 0 312 79 1328 288 161 38 chr12 67537542 67538172 -76248283 - L2 LINE L2 -490 2823 2013 5888 26 0 0 chr12 67538211 67538906 -76247549 - L1P LINE L1 -1330 4816 4122 2140 24 0 0 chr12 67538906 67539154 -76247301 + L1PA2 LINE L1 5906 6155 0 1021 215 37 5 chr12 67540497 67540711 -76245744 + MER58A DNA MER1_type 4 224 0 21 36 0 0 chr12 67540847 67540875 -76245580 + AT_rich Low_complexity Low_complexity 1 28 0 2244 103 3 7 chr12 67541315 67541617 -76244838 - AluSq SINE Alu -10 303 3 261 128 0 0 chr12 67542083 67542130 -76244325 + (GA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr12 67542195 67542216 -76244239 + AT_rich Low_complexity Low_complexity 1 21 0 418 289 84 17 chr12 67542705 67542867 -76243588 + L1MC5 LINE L1 7311 7496 -465 2175 92 11 7 chr12 67542867 67543176 -76243279 + AluSx SINE Alu 1 310 0 418 289 84 17 chr12 67543176 67543251 -76243204 + L1MC5 LINE L1 7496 7565 -396 6454 140 25 30 chr12 67543490 67544243 -76242212 + L1MA3 LINE L1 4122 4877 -1428 2660 100 14 0 chr12 67544243 67544613 -76241842 + THE1C LTR MaLR 1 375 0 6454 140 25 30 chr12 67544613 67546052 -76240403 + L1MA3 LINE L1 4877 6304 -1 453 234 156 83 chr12 67546864 67547069 -76239386 + MIR SINE MIR 32 251 -11 1408 289 81 51 chr12 67547147 67548107 -76238348 + L2 LINE L2 2295 3298 -15 2181 117 0 13 chr12 67548152 67548452 -76238003 + AluSg SINE Alu 1 296 -14 1975 151 7 0 chr12 67548908 67549213 -76237242 + AluSx SINE Alu 1 307 -5 192 200 18 55 chr12 67549592 67549647 -76236808 + L2 LINE L2 3220 3272 0 273 278 161 28 chr12 67549819 67549999 -76236456 + L2 LINE L2 3110 3313 0 260 291 91 30 chr12 67550098 67550263 -76236192 + MER104 DNA Tc2 6 180 0 191 61 30 0 chr12 67551656 67551689 -76234766 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2121 124 10 10 chr12 67551694 67552040 -76234415 + AluSx SINE Alu 1 312 0 291 246 0 0 chr12 67552045 67552114 -76234341 - L1ME4a LINE L1 -106 6015 5947 1546 157 11 25 chr12 67552202 67552531 -76233924 + AluJo SINE Alu 1 325 0 439 221 81 50 chr12 67552541 67552763 -76233692 - L1ME4a LINE L1 -180 5941 5713 328 233 35 12 chr12 67552960 67553046 -76233409 - L1ME4a LINE L1 -460 5661 5574 350 275 219 44 chr12 67553456 67553669 -76232786 - MARNA DNA Mariner -210 376 111 398 171 0 24 chr12 67553669 67553751 -76232704 - MER116 DNA Mariner 0 80 1 350 275 219 44 chr12 67553751 67553788 -76232667 - MARNA DNA Mariner -475 111 82 288 0 0 0 chr12 67554230 67554262 -76232193 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr12 67555550 67555574 -76230881 + AT_rich Low_complexity Low_complexity 1 24 0 206 176 20 0 chr12 67555584 67555635 -76230820 + (TA)n Simple_repeat Simple_repeat 1 52 0 888 268 49 8 chr12 67555643 67555886 -76230569 - MIR SINE MIR -5 257 5 261 250 0 0 chr12 67557097 67557153 -76229302 - L2 LINE L2 0 3313 3258 366 286 87 24 chr12 67557818 67557944 -76228511 + MIR SINE MIR 22 155 -107 364 239 120 0 chr12 67558387 67558479 -76227976 - L2 LINE L2 0 3272 3170 234 91 0 0 chr12 67558815 67558848 -76227607 + (T)n Simple_repeat Simple_repeat 1 33 0 1126 201 28 16 chr12 67559043 67559297 -76227158 + MIR SINE MIR 3 259 -3 2623 114 89 5 chr12 67559420 67559815 -76226640 - MSTA LTR MaLR 0 428 1 2041 121 3 29 chr12 67559845 67560151 -76226304 - AluSg SINE Alu -12 298 1 2073 126 3 7 chr12 67560154 67560456 -76225999 - AluSx SINE Alu -11 301 1 517 156 0 0 chr12 67560891 67560981 -76225474 - L1MA6 LINE L1 0 6300 6211 1870 147 71 18 chr12 67561534 67561860 -76224595 + MER61A LTR ERV1 1 343 0 213 314 186 0 chr12 67561929 67561999 -76224456 + MIR SINE MIR 41 123 -85 244 315 74 9 chr12 67562334 67562442 -76224013 + L3 LINE CR1 1457 1571 -6 2387 100 0 0 chr12 67562554 67562855 -76223600 - AluSx SINE Alu -11 301 1 815 112 0 0 chr12 67563944 67564086 -76222369 - AluSx SINE Alu 0 318 177 712 91 0 0 chr12 67564086 67564174 -76222281 - AluSx SINE Alu -223 89 2 194 317 92 17 chr12 67564256 67564376 -76222079 + L2 LINE L2 2935 3063 -209 1488 136 12 127 chr12 67566045 67566368 -76220087 - AluJo SINE Alu -18 294 9 2324 72 0 0 chr12 67566467 67566746 -76219709 - AluSg SINE Alu -31 279 1 12233 25 1 0 chr12 67566760 67568884 -76217571 - L1PA2 LINE L1 0 6155 4030 1533 114 0 0 chr12 67569011 67569230 -76217225 - L1PA10 LINE L1 -115 6053 5835 1025 68 0 55 chr12 67569227 67569373 -76217082 - L1PA10 LINE L1 -246 5922 5785 * 186 294 15 15 chr12 67569704 67569772 -76216683 + MIR SINE MIR 182 249 -13 49 66 0 0 chr12 67570584 67570675 -76215780 + AT_rich Low_complexity Low_complexity 1 91 0 379 209 173 0 chr12 67570756 67570866 -76215589 - MER112 DNA MER1_type -115 145 17 1520 167 45 28 chr12 67570867 67571155 -76215300 - AluJb SINE Alu -18 294 2 283 320 33 8 chr12 67571265 67571387 -76215068 - L2 LINE L2 -452 2862 2738 216 0 0 0 chr12 67571410 67571434 -76215021 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1312 122 0 25 chr12 67571438 67571634 -76214821 - AluSg/x SINE Alu -37 273 83 44174 29 21 1 chr12 67571660 67577690 -76208765 - L1PA2 LINE L1 0 6155 2 758 256 26 43 chr12 67577706 67577936 -76208519 + MIR SINE MIR 26 251 -11 1205 239 24 39 chr12 67578014 67578349 -76208106 + L1ME1 LINE L1 5831 6160 -6 * 4674 143 27 30 chr12 67578348 67579187 -76207268 + L1MB3 LINE L1 5345 6181 -2 1977 119 65 0 chr12 67579217 67579495 -76206960 - AluSx SINE Alu -16 296 1 531 272 16 0 chr12 67579496 67579621 -76206834 - L2 LINE L2 -7 3306 3180 335 314 77 21 chr12 67579795 67579989 -76206466 + L2 LINE L2 3038 3242 -71 1278 230 62 40 chr12 67580246 67580646 -76205809 + MLT1I LTR MaLR 1 409 0 246 328 0 0 chr12 67580646 67580707 -76205748 + L2 LINE L2 3134 3194 -78 2211 98 13 13 chr12 67580887 67581194 -76205261 - AluSx SINE Alu -5 307 1 191 81 54 0 chr12 67581610 67581647 -76204808 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2122 113 0 0 chr12 67581676 67581987 -76204468 - AluSx SINE Alu 0 311 1 30 0 0 0 chr12 67581989 67582019 -76204436 + AT_rich Low_complexity Low_complexity 1 30 0 818 147 0 9 chr12 67582019 67582135 -76204320 - FLAM_A SINE Alu -18 115 1 1717 143 15 0 chr12 67582765 67583024 -76203431 - AluSx SINE Alu -49 263 1 2273 101 3 0 chr12 67583037 67583324 -76203131 - AluSg SINE Alu -22 288 1 2260 116 0 16 chr12 67583783 67584094 -76202361 - AluSg SINE Alu -4 306 1 2396 77 0 17 chr12 67584319 67584619 -76201836 + AluSp SINE Alu 1 295 -18 1890 178 0 13 chr12 67585062 67585360 -76201095 - AluSx SINE Alu -18 294 1 1751 192 26 3 chr12 67585477 67585820 -76200635 - L1MB7 LINE L1 -3 6181 5831 288 310 35 9 chr12 67585857 67585973 -76200482 + Charlie8 DNA MER1_type 144 262 -2155 675 232 17 45 chr12 67586051 67586091 -76200364 - MER5B DNA MER1_type -5 173 133 1579 149 0 0 chr12 67586091 67586326 -76200129 + MER46A DNA MER2_type 1 235 -1 675 232 17 45 chr12 67586326 67586462 -76199993 - MER5B DNA MER1_type -45 133 2 29 28 0 0 chr12 67587195 67587231 -76199224 + AT_rich Low_complexity Low_complexity 1 36 0 404 241 0 117 chr12 67588559 67588721 -76197734 + MIR3 SINE MIR 54 196 -12 2259 92 0 0 chr12 67589805 67590144 -76196311 + AluSg SINE Alu 1 339 0 31 26 0 0 chr12 67590147 67590185 -76196270 + AT_rich Low_complexity Low_complexity 1 38 0 388 295 145 5 chr12 67590199 67590399 -76196056 + MIR SINE MIR 14 241 -21 2284 81 7 7 chr12 67590547 67590845 -76195610 - AluSq SINE Alu -13 300 3 698 157 17 0 chr12 67590847 67590962 -76195493 - AluJo SINE Alu -175 137 21 2315 107 0 3 chr12 67590972 67591282 -76195173 - AluSx SINE Alu -3 309 1 5500 148 26 13 chr12 67591282 67593108 -76193347 - L1PB1 LINE L1 -178 5973 4126 2111 157 58 2 chr12 67593102 67593498 -76192957 - L1MB7 LINE L1 -349 5829 5412 * 1377 200 52 7 chr12 67593498 67593788 -76192667 + MER58B DNA MER1_type 38 340 -1 180 0 0 0 chr12 67593877 67593897 -76192558 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 190 307 185 67 chr12 67593963 67594201 -76192254 + L2 LINE L2 2595 2860 -454 1490 186 17 20 chr12 67594255 67594556 -76191899 - AluJb SINE Alu -11 301 2 1177 131 27 0 chr12 67594564 67594747 -76191708 - AluSg/x SINE Alu -10 300 113 252 188 59 10 chr12 67594993 67595094 -76191361 + (TA)n Simple_repeat Simple_repeat 1 106 0 723 171 16 0 chr12 67595134 67595263 -76191192 + MLT2B3 LTR ERVL 1 131 -423 1115 211 0 0 chr12 67595297 67595515 -76190940 + MLT-int LTR MaLR 5 222 -1513 1948 165 73 3 chr12 67595524 67595881 -76190574 + MSTD-int LTR MaLR 1354 1735 0 2069 158 74 29 chr12 67595881 67596260 -76190195 + MSTD LTR MaLR 1 396 0 9845 62 11 3 chr12 67596589 67598577 -76187878 - L1PA7 LINE L1 0 6154 4152 189 333 86 29 chr12 67598912 67599017 -76187438 + L2 LINE L2 3155 3265 -7 386 269 80 17 chr12 67599029 67599204 -76187251 + MER3 DNA MER1_type 24 209 0 * 802 183 100 6 chr12 67599051 67599231 -76187224 - MER3 DNA MER1_type 0 209 13 216 348 98 24 chr12 67599241 67599405 -76187050 - L2 LINE L2 -164 3108 2933 1702 134 95 48 chr12 67600053 67600330 -76186125 + THE1C LTR MaLR 1 300 -75 4919 72 50 29 chr12 67600330 67600983 -76185472 + PABL_B LTR ERV1 1 667 0 1702 134 95 48 chr12 67600983 67601063 -76185392 + THE1C LTR MaLR 300 375 0 189 319 21 32 chr12 67601282 67601376 -76185079 - L3b LINE CR1 -377 1206 1114 324 261 136 0 chr12 67601529 67601617 -76184838 - MER81 DNA DNA -14 100 1 806 155 0 16 chr12 67602051 67602180 -76184275 + FLAM_C SINE Alu 1 127 -16 2200 118 7 3 chr12 67602188 67602494 -76183961 + AluSq SINE Alu 1 307 -6 573 243 87 32 chr12 67603280 67603659 -76182796 + MER113 DNA MER1_type? 78 521 0 292 310 69 39 chr12 67603879 67604082 -76182373 - MIR SINE MIR 0 262 54 563 231 97 28 chr12 67604395 67604557 -76181898 + MIR SINE MIR 2 163 -63 2147 109 0 3 chr12 67604573 67604880 -76181575 - AluSx SINE Alu 0 306 1 265 237 62 37 chr12 67605661 67605796 -76180659 + MIR SINE MIR 92 226 -36 1061 247 40 35 chr12 67606052 67606428 -76180027 - L1M4 LINE L1 -3543 2603 2226 342 256 186 0 chr12 67606489 67606661 -76179794 - L1MC5 LINE L1 -510 7451 7248 891 158 47 64 chr12 67606672 67606848 -76179607 - L1MC5 LINE L1 -751 7210 7037 2220 105 0 19 chr12 67606848 67607163 -76179292 - AluSc SINE Alu 0 309 1 891 158 47 64 chr12 67607163 67607220 -76179235 - L1MC5 LINE L1 -924 7037 6981 288 157 12 48 chr12 67607425 67607508 -76178947 + CT-rich Low_complexity Low_complexity 1 80 0 2052 90 8 0 chr12 67607527 67607793 -76178662 - AluSx SINE Alu -44 268 1 1144 216 118 16 chr12 67609328 67609768 -76176687 - Charlie2 DNA MER1_type -1 2861 2377 23 33 0 0 chr12 67609780 67609810 -76176645 + AT_rich Low_complexity Low_complexity 1 30 0 2090 104 10 3 chr12 67609815 67610104 -76176351 + AluSx SINE Alu 1 291 -21 182 88 0 29 chr12 67610230 67610264 -76176191 + (ATG)n Simple_repeat Simple_repeat 2 34 0 773 195 0 0 chr12 67610275 67610393 -76176062 - FLAM_A SINE Alu -13 120 3 368 238 133 0 chr12 67610817 67610922 -76175533 - L2 LINE L2 -1 3312 3194 264 337 11 11 chr12 67611042 67611131 -76175324 - L2 LINE L2 -28 3285 3197 187 250 0 26 chr12 67612666 67612742 -76173713 + A-rich Low_complexity Low_complexity 3 76 0 194 271 0 0 chr12 67612996 67613044 -76173411 + L3 LINE CR1 627 674 -903 198 296 0 19 chr12 67613305 67613359 -76173096 - L2 LINE L2 -86 3186 3134 2220 92 6 22 chr12 67613670 67613984 -76172471 - AluSq SINE Alu -3 310 2 544 239 174 0 chr12 67613992 67614147 -76172308 + MER5A DNA MER1_type 5 186 -3 654 144 17 34 chr12 67614174 67614292 -76172163 + Charlie4a DNA MER1_type 39 154 -354 * 738 200 83 46 chr12 67614270 67614510 -76171945 + Charlie4a DNA MER1_type 259 507 -1 1814 137 10 17 chr12 67615611 67615903 -76170552 - AluSx SINE Alu -22 290 1 959 341 85 24 chr12 67615936 67616761 -76169694 + L2 LINE L2 2228 3093 -179 1999 108 77 0 chr12 67616785 67617072 -76169383 - AluSg SINE Alu 0 310 2 3854 39 2 0 chr12 67617072 67617508 -76168947 + L1PA5 LINE L1 5718 6154 0 634 238 25 62 chr12 67617654 67617894 -76168561 + L1MC5 LINE L1 6994 7224 -737 1819 148 40 14 chr12 67617921 67618218 -76168237 + AluJb SINE Alu 1 305 -7 282 327 36 30 chr12 67618228 67618396 -76168059 + L1MC4a LINE L1 7244 7412 -396 2064 119 0 3 chr12 67618417 67618739 -76167716 + AluSx SINE Alu 1 321 0 2262 123 31 0 chr12 67618752 67619102 -76167353 + L1MB4 LINE L1 5807 6167 -13 267 254 0 0 chr12 67619154 67619221 -76167234 + L1MC5 LINE L1 7806 7872 -89 2024 121 0 0 chr12 67619221 67619658 -76166797 - AluSx SINE Alu 0 447 11 1565 190 19 32 chr12 67619670 67619986 -76166469 - AluJo SINE Alu 0 312 1 2562 69 0 0 chr12 67620051 67620355 -76166100 - AluY SINE Alu -7 304 1 268 277 34 101 chr12 67621092 67621155 -76165300 + MIR3 SINE MIR 58 111 -97 2323 87 3 0 chr12 67621155 67621453 -76165002 + AluSq SINE Alu 1 299 -14 268 277 34 101 chr12 67621453 67621508 -76164947 + MIR3 SINE MIR 111 168 -40 1963 123 13 20 chr12 67621738 67622039 -76164416 - AluSx SINE Alu -13 299 1 432 125 0 0 chr12 67622063 67622127 -76164328 + MER92C LTR ERV1 491 554 0 23 0 0 0 chr12 67622197 67622220 -76164235 + AT_rich Low_complexity Low_complexity 1 23 0 1697 147 0 41 chr12 67623070 67623263 -76163192 - AluJb SINE Alu 0 301 123 6414 49 34 3 chr12 67623263 67624019 -76162436 + LTR17 LTR ERV1 1 780 0 1697 147 0 41 chr12 67624019 67624138 -76162317 - AluJb SINE Alu -178 123 1 275 196 0 0 chr12 67624339 67624385 -76162070 + MIR SINE MIR 47 92 -170 791 167 212 6 chr12 67624385 67624755 -76161700 + LTR54B LTR ERV1 1 510 0 317 165 25 51 chr12 67624772 67624851 -76161604 + MIR SINE MIR 118 194 -68 1313 157 108 87 chr12 67625022 67625309 -76161146 - AluJo SINE Alu -9 293 1 282 245 60 92 chr12 67625318 67625502 -76160953 - L1MDa LINE L1 -3066 3474 3297 * 1830 174 65 79 chr12 67625487 67625658 -76160797 - L1MDa LINE L1 -4816 1724 1552 922 123 0 43 chr12 67625658 67625819 -76160636 - FLAM_C SINE Alu 0 133 2 1830 174 65 79 chr12 67625819 67626227 -76160228 - L1MDa LINE L1 -4988 1552 1153 814 102 0 9 chr12 67626356 67626464 -76159991 + FLAM_C SINE Alu 11 117 -26 422 108 0 46 chr12 67627371 67627436 -76159019 - AluJb SINE Alu -12 300 239 1042 136 11 60 chr12 67627437 67627621 -76158834 - AluJb SINE Alu -137 175 1 878 280 113 53 chr12 67627993 67628694 -76157761 - L2 LINE L2 -2 3311 2527 340 365 19 26 chr12 67628749 67628905 -76157550 - MER5A DNA MER1_type 0 189 35 567 215 9 0 chr12 67629096 67629203 -76157252 + AluJb SINE Alu 205 312 0 1336 135 10 5 chr12 67629781 67629981 -76156474 + AluSg/x SINE Alu 94 294 -16 2156 121 7 10 chr12 67629985 67630291 -76156164 + AluSx SINE Alu 3 307 -5 915 147 0 45 chr12 67630768 67630924 -76155531 + AluJo SINE Alu 1 149 -163 1200 225 9 0 chr12 67630946 67631168 -76155287 + MER58A DNA MER1_type 1 224 0 1723 157 37 13 chr12 67631187 67631487 -76154968 + AluJb SINE Alu 1 307 -5 2331 103 6 0 chr12 67631556 67631867 -76154588 + AluSp SINE Alu 1 313 0 1143 145 0 11 chr12 67631884 67632063 -76154392 + AluSp SINE Alu 131 307 -6 1407 145 10 0 chr12 67632216 67632423 -76154032 - AluSx SINE Alu -101 211 3 2317 107 0 16 chr12 67632538 67632847 -76153608 + AluSx SINE Alu 2 305 -7 515 282 286 30 chr12 67632905 67633365 -76153090 - L2 LINE L2 0 3313 2734 2182 101 0 25 chr12 67633372 67633690 -76152765 + AluSx SINE Alu 1 310 -2 908 184 0 0 chr12 67633800 67633952 -76152503 + FRAM SINE Alu 1 151 -25 36 23 0 0 chr12 67634024 67634067 -76152388 + AT_rich Low_complexity Low_complexity 1 43 0 342 159 32 0 chr12 67634164 67634227 -76152228 + AluS SINE Alu 2 66 -234 23 0 0 0 chr12 67634844 67634867 -76151588 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 67634943 67634968 -76151487 + GC_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 67634989 67635011 -76151444 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 67635627 67635648 -76150807 + AT_rich Low_complexity Low_complexity 1 21 0 2226 97 35 0 chr12 67636377 67636665 -76149790 - AluSx SINE Alu -14 298 1 587 157 40 43 chr12 67637427 67637674 -76148781 + AluJ SINE Alu 2 303 -9 25 31 0 0 chr12 67637762 67637794 -76148661 + AT_rich Low_complexity Low_complexity 1 32 0 2263 127 0 0 chr12 67637973 67638273 -76148182 + AluSq SINE Alu 1 300 -13 529 319 141 4 chr12 67638338 67638601 -76147854 - L2 LINE L2 -640 2674 2376 304 208 42 0 chr12 67638872 67638944 -76147511 + MER116 DNA Mariner 6 80 0 216 279 74 49 chr12 67638982 67639104 -76147351 - MIR SINE MIR -65 197 73 2028 113 0 3 chr12 67639349 67639632 -76146823 - AluSx SINE Alu -30 282 1 1091 178 12 0 chr12 67639725 67639894 -76146561 + FAM SINE Alu 2 172 -3 1833 153 0 0 chr12 67640267 67640541 -76145914 + AluSx SINE Alu 36 309 -3 1902 125 0 28 chr12 67641681 67641969 -76144486 + AluSq SINE Alu 1 280 -33 1320 148 0 14 chr12 67642071 67642280 -76144175 - AluJo SINE Alu -106 206 1 1646 157 61 4 chr12 67642287 67642449 -76144006 - AluJo SINE Alu -16 296 110 180 97 0 0 chr12 67642449 67642480 -76143975 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1646 157 61 4 chr12 67642480 67642597 -76143858 - AluJo SINE Alu -202 110 1 2319 84 0 23 chr12 67642648 67642956 -76143499 + AluSx SINE Alu 1 301 -11 263 267 118 37 chr12 67642958 67643093 -76143362 + L1MC5 LINE L1 7621 7766 -195 1151 165 0 0 chr12 67643656 67643826 -76142629 + AluSx SINE Alu 1 170 -142 189 261 23 45 chr12 67643991 67644079 -76142376 - L2 LINE L2 -663 2651 2566 27 108 0 0 chr12 67644717 67644828 -76141627 + AT_rich Low_complexity Low_complexity 1 111 0 1310 227 3 23 chr12 67645000 67645300 -76141155 - AluJo SINE Alu -16 296 3 733 188 16 0 chr12 67645311 67645439 -76141016 - FLAM_A SINE Alu -3 130 1 223 309 74 0 chr12 67646230 67646311 -76140144 - MIR SINE MIR -70 192 106 212 155 12 36 chr12 67646851 67646935 -76139520 + (TA)n Simple_repeat Simple_repeat 2 83 0 215 250 0 0 chr12 67647366 67647418 -76139037 + T-rich Low_complexity Low_complexity 1 52 0 698 198 0 0 chr12 67647482 67647593 -76138862 + AluJb SINE Alu 2 112 -200 2409 54 20 0 chr12 67647639 67647937 -76138518 - AluY SINE Alu -7 304 1 2416 176 35 6 chr12 67647937 67648425 -76138030 - L1 LINE L1 -1441 4705 4204 232 267 0 0 chr12 67648805 67648865 -76137590 + MIR SINE MIR 165 224 -38 988 180 5 25 chr12 67649165 67649365 -76137090 + MER3 DNA MER1_type 9 204 -5 429 230 10 10 chr12 67649619 67649719 -76136736 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr12 67849846 67849867 -75936588 + AT_rich Low_complexity Low_complexity 1 21 0 997 196 18 0 chr12 67851329 67851497 -75934958 + FAM SINE Alu 1 171 -4 330 216 14 0 chr12 67851598 67851672 -75934783 - MER116 DNA Mariner -2 78 4 227 266 180 23 chr12 67853126 67853254 -75933201 - L2 LINE L2 -1 3312 3165 183 205 0 0 chr12 67853919 67853958 -75932497 + (CATA)n Simple_repeat Simple_repeat 2 40 0 487 165 8 30 chr12 67856525 67856658 -75929797 + GA-rich Low_complexity Low_complexity 3 132 0 393 22 0 0 chr12 67856822 67856868 -75929587 + (TG)n Simple_repeat Simple_repeat 1 46 0 884 231 95 17 chr12 67856931 67857102 -75929353 - MER5C DNA MER1_type -4 320 164 2273 118 0 9 chr12 67857102 67857417 -75929038 + AluSx SINE Alu 1 312 0 884 231 95 17 chr12 67857417 67857540 -75928915 - MER5C DNA MER1_type -160 164 3 815 21 0 0 chr12 67858917 67859014 -75927441 + L1PA4 LINE L1 6056 6152 -3 4448 229 8 20 chr12 67860070 67861017 -75925438 - L1MA7 LINE L1 0 6291 5356 180 176 0 0 chr12 67861043 67861077 -75925378 + CT-rich Low_complexity Low_complexity 2 35 0 2204 91 0 14 chr12 67863214 67863499 -75922956 - AluSx SINE Alu -31 281 1 1487 138 8 23 chr12 67864338 67864599 -75921856 + MER21B-int LTR ERV1 3879 4135 -56 2508 204 42 2 chr12 67864686 67865166 -75921289 + MER21B LTR ERV1 1 499 -364 278 261 0 15 chr12 67865169 67865234 -75921221 - L2 LINE L2 0 3272 3209 243 279 0 15 chr12 67865363 67865431 -75921024 - L2 LINE L2 -3 3269 3203 264 130 0 0 chr12 67865576 67865622 -75920833 + (TC)n Simple_repeat Simple_repeat 1 46 0 710 261 71 50 chr12 67865669 67866033 -75920422 - L2 LINE L2 -79 3234 2863 1298 231 29 34 chr12 67866062 67866400 -75920055 - MLT1B LTR MaLR -7 383 46 2410 109 22 3 chr12 67866400 67866757 -75919698 + THE1B LTR MaLR 1 364 0 1298 231 29 34 chr12 67866757 67866803 -75919652 - MLT1B LTR MaLR -344 46 1 966 251 94 35 chr12 67867300 67867639 -75918816 + L2 LINE L2 2954 3312 -1 301 321 27 27 chr12 67867816 67867928 -75918527 + MIR SINE MIR 26 137 -71 665 216 136 30 chr12 67868549 67868748 -75917707 + MIR SINE MIR 9 228 -34 249 83 0 0 chr12 67869528 67869564 -75916891 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 2256 99 0 14 chr12 67870338 67870632 -75915823 - AluSc SINE Alu -19 290 1 39 38 0 0 chr12 67870666 67870719 -75915736 + AT_rich Low_complexity Low_complexity 1 53 0 363 263 94 42 chr12 67872431 67872644 -75913811 + MER102b DNA MER1_type 118 341 0 453 254 68 17 chr12 67872936 67873054 -75913401 + L2 LINE L2 3185 3308 -5 292 349 174 5 chr12 67873127 67873322 -75913133 - MIR SINE MIR -14 248 21 1688 222 0 0 chr12 67874257 67874550 -75911905 + AluJb SINE Alu 3 295 -17 1511 247 116 7 chr12 67874611 67875215 -75911240 - L1M4 LINE L1 -2603 3747 3078 577 265 20 0 chr12 67875215 67875366 -75911089 - L1M4 LINE L1 -5808 473 320 706 296 49 36 chr12 67875595 67875903 -75910552 - L1M4 LINE L1 -5969 312 1 1758 256 97 12 chr12 67875907 67876601 -75909854 - L1MCc LINE L1 -4887 1536 832 180 0 0 0 chr12 67876748 67876768 -75909687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 945 256 89 56 chr12 67876773 67876792 -75909663 - L1MCc LINE L1 -5857 566 549 278 25 0 25 chr12 67876792 67876832 -75909623 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 945 256 89 56 chr12 67876832 67877328 -75909127 - L1MCc LINE L1 -5874 549 34 861 278 58 88 chr12 67877426 67878030 -75908425 - MLT1L LTR MaLR -1 614 29 220 317 0 17 chr12 67878057 67878117 -75908338 + MIR SINE MIR 10 68 -194 207 0 0 0 chr12 67878845 67878868 -75907587 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2066 133 0 0 chr12 67878868 67879146 -75907309 - AluSx SINE Alu -32 280 3 1654 221 12 12 chr12 67879310 67879718 -75906737 - LTR52 LTR ERVL -3 418 11 1006 139 6 6 chr12 67880165 67880345 -75906110 + CT-rich Low_complexity Low_complexity 1 180 0 1547 201 14 10 chr12 67880349 67880642 -75905813 - AluJo SINE Alu -17 295 2 2884 217 15 20 chr12 67880643 67881297 -75905158 + MER82 DNA MER2_type 3 653 0 28 29 0 0 chr12 67881305 67881340 -75905115 + AT_rich Low_complexity Low_complexity 1 35 0 1475 228 98 41 chr12 67881506 67881998 -75904457 - MLT2B1 LTR ERVL 0 520 1 23 0 0 0 chr12 67882365 67882388 -75904067 + AT_rich Low_complexity Low_complexity 1 23 0 1983 142 0 0 chr12 67882523 67882811 -75903644 - AluSx SINE Alu -24 288 1 661 302 47 3 chr12 67882864 67883285 -75903170 - L1P4 LINE L1 -437 5724 5254 198 0 0 0 chr12 67883807 67883829 -75902626 + (A)n Simple_repeat Simple_repeat 1 22 0 673 294 91 47 chr12 67883886 67885001 -75901454 - L1M4 LINE L1 -1038 5108 3945 248 154 19 0 chr12 67885015 67885067 -75901388 + CT-rich Low_complexity Low_complexity 2 54 0 338 256 31 23 chr12 67885469 67885598 -75900857 - MLT1L LTR MaLR -40 575 446 1082 222 18 5 chr12 67885794 67886015 -75900440 - MER58A DNA MER1_type 0 224 1 495 0 0 0 chr12 67886397 67886452 -75900003 + (CA)n Simple_repeat Simple_repeat 2 56 0 201 108 0 0 chr12 67886457 67886494 -75899961 + (A)n Simple_repeat Simple_repeat 1 37 0 196 298 0 0 chr12 67886494 67886541 -75899914 - MER5B DNA MER1_type -129 49 3 289 318 67 71 chr12 67888478 67888985 -75897470 - L2 LINE L2 -353 2961 2457 1011 271 43 28 chr12 67889069 67889415 -75897040 + L2 LINE L2 2795 3144 -169 970 263 55 30 chr12 67889429 67889794 -75896661 - MLT1I LTR MaLR -24 385 12 294 253 158 63 chr12 67889808 67889966 -75896489 + L2 LINE L2 3141 3313 0 2112 113 0 3 chr12 67891320 67891612 -75894843 + AluSx SINE Alu 18 308 -4 221 289 123 53 chr12 67891782 67891897 -75894558 - MIR SINE MIR -30 232 126 2003 126 0 14 chr12 67891897 67892182 -75894273 + AluSx SINE Alu 1 281 -31 186 71 0 0 chr12 67892186 67892214 -75894241 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 221 289 123 53 chr12 67892214 67892280 -75894175 - MIR SINE MIR -138 124 33 1060 156 73 60 chr12 67892286 67892303 -75894152 - MER33 DNA MER1_type -2265 320 305 2446 148 7 59 chr12 67892303 67892761 -75893694 - Tigger2a DNA MER2_type 0 434 1 1060 156 73 60 chr12 67892761 67893058 -75893397 - MER33 DNA MER1_type -2280 305 2 651 330 5 0 chr12 67893182 67893373 -75893082 - MER91A DNA MER1_type -2 194 3 298 314 49 10 chr12 67893936 67894038 -75892417 + MIR SINE MIR 32 137 -125 29 28 0 0 chr12 67894196 67894232 -75892223 + AT_rich Low_complexity Low_complexity 1 36 0 2445 92 3 0 chr12 67894291 67894596 -75891859 + AluSp SINE Alu 1 306 -7 564 136 0 0 chr12 67894671 67894752 -75891703 + AluSg/x SINE Alu 205 285 -24 205 288 0 34 chr12 67895134 67895193 -75891262 + L2 LINE L2 3028 3084 -188 497 191 158 95 chr12 67895213 67895612 -75890843 - Zaphod DNA AcHobo -13 4018 3595 25 0 0 0 chr12 67895689 67895714 -75890741 + AT_rich Low_complexity Low_complexity 1 25 0 31 26 0 0 chr12 67895801 67895839 -75890616 + AT_rich Low_complexity Low_complexity 1 38 0 696 278 46 66 chr12 67896005 67896487 -75889968 - Zaphod DNA AcHobo -3274 757 286 1307 127 52 5 chr12 67896493 67896705 -75889750 + MER30 DNA MER1_type 3 224 -6 259 219 0 55 chr12 67896724 67896797 -75889658 - Zaphod DNA AcHobo -3789 242 174 1239 291 41 26 chr12 67896881 67897387 -75889068 + L2 LINE L2 2412 2923 -349 14798 112 31 35 chr12 67897387 67898602 -75887853 + MER57-int LTR ERV1 2397 3616 -3921 1723 177 0 39 chr12 67898602 67898912 -75887543 + AluSx SINE Alu 1 298 -14 14798 112 31 35 chr12 67898912 67901166 -75885289 + MER57-int LTR ERV1 3616 6332 -1205 2129 112 14 3 chr12 67901166 67901462 -75884993 + AluSc SINE Alu 1 299 -10 14798 112 31 35 chr12 67901462 67902274 -75884181 + MER57-int LTR ERV1 6332 7146 -391 658 185 15 0 chr12 67902274 67902404 -75884051 + LTR54B LTR ERV1 3 134 -364 1437 90 116 9 chr12 67902404 67902637 -75883818 + MER57B-int LTR ERV1 7278 7535 -2 2972 109 7 0 chr12 67902639 67903070 -75883385 + MER57B LTR ERV1 1 434 0 371 222 89 82 chr12 67903548 67903683 -75882772 - L2 LINE L2 0 3272 3137 225 94 0 0 chr12 67903711 67903743 -75882712 + (T)n Simple_repeat Simple_repeat 1 32 0 522 0 0 0 chr12 67903759 67903817 -75882638 + (TA)n Simple_repeat Simple_repeat 2 59 0 25111 44 4 3 chr12 67903823 67907748 -75878707 - L1PA5 LINE L1 -13 6141 2212 356 252 14 21 chr12 67907749 67907892 -75878563 + HAL1 LINE L1 1128 1269 -1238 * 587 115 0 5 chr12 67907888 67908004 -75878451 + L1P3 LINE L1 1531 1650 -4811 853 212 117 38 chr12 67908026 67908290 -75878165 + L2 LINE L2 3021 3305 -8 1707 150 21 24 chr12 67908291 67908578 -75877877 + AluJo SINE Alu 1 286 -26 492 259 26 53 chr12 67908620 67908886 -75877569 + HAL1 LINE L1 2230 2488 -19 306 162 27 95 chr12 67908962 67909036 -75877419 - MIR SINE MIR 0 262 194 572 266 68 62 chr12 67909783 67909967 -75876488 + L2 LINE L2 2988 3176 -137 750 131 8 0 chr12 67909967 67910089 -75876366 - L1MA1 LINE L1 0 6302 6180 572 266 68 62 chr12 67910089 67910227 -75876228 + L2 LINE L2 3176 3312 -1 2101 108 49 0 chr12 67910808 67911096 -75875359 - AluSx SINE Alu -10 302 1 198 0 0 0 chr12 67911190 67911212 -75875243 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2309 106 81 0 chr12 67911214 67911571 -75874884 - L1PA8A LINE L1 -18 6113 5728 2235 58 13 1 chr12 67911671 67912141 -75874314 - L1PA8A LINE L1 -592 5562 5090 * 6073 74 6 0 chr12 67912132 67912993 -75873462 + L1PA8A LINE L1 4214 5079 -1067 183 156 0 0 chr12 67913617 67913649 -75872806 + (TTA)n Simple_repeat Simple_repeat 3 34 0 294 227 0 0 chr12 67913731 67913806 -75872649 + (TA)n Simple_repeat Simple_repeat 2 76 0 283 267 80 131 chr12 67914204 67914380 -75872075 - MIR3 SINE MIR -2 206 40 791 274 90 53 chr12 67914455 67914911 -75871544 - MLT1K LTR MaLR 0 476 4 242 224 60 60 chr12 67915354 67915470 -75870985 - L2 LINE L2 -1 3271 3156 2106 139 117 2 chr12 67915560 67915963 -75870492 + L1PB4 LINE L1 5708 6156 0 1744 157 48 45 chr12 67915985 67916317 -75870138 - MER1B DNA MER1_type -4 333 1 278 305 135 53 chr12 67916352 67916820 -75869635 - L2 LINE L2 -212 3060 2531 450 267 35 0 chr12 67917491 67917615 -75868840 + MIR SINE MIR 35 162 -64 909 312 35 48 chr12 67918105 67918503 -75867952 + MLT1K LTR MaLR 134 527 -61 207 0 0 0 chr12 67918503 67918526 -75867929 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 909 312 35 48 chr12 67918526 67918588 -75867867 + MLT1K LTR MaLR 527 588 0 1036 188 0 12 chr12 67919753 67919923 -75866532 - FAM SINE Alu -12 173 6 23 33 0 0 chr12 67921274 67921304 -75865151 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 67922052 67922081 -75864374 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 67922433 67922460 -75863995 + AT_rich Low_complexity Low_complexity 1 27 0 255 133 0 0 chr12 67922838 67922883 -75863572 + (GA)n Simple_repeat Simple_repeat 2 46 0 302 87 0 22 chr12 67923749 67923795 -75862660 + (CACCC)n Simple_repeat Simple_repeat 3 47 0 337 278 93 45 chr12 67924429 67924583 -75861872 - MIR SINE MIR -38 170 9 294 29 0 0 chr12 67925422 67925457 -75860998 + (CA)n Simple_repeat Simple_repeat 1 35 0 2478 78 0 0 chr12 67927007 67927315 -75859140 + AluY SINE Alu 1 308 -3 952 96 0 22 chr12 67929703 67929838 -75856617 - FLAM_C SINE Alu -1 132 1 1811 115 84 14 chr12 67931987 67932273 -75854182 - AluSg SINE Alu -4 306 1 224 222 95 0 chr12 67933050 67933113 -75853342 - MIR SINE MIR -102 160 92 352 263 91 10 chr12 67933963 67934062 -75852393 + MER5B DNA MER1_type 6 112 -66 953 167 70 5 chr12 67934072 67934258 -75852197 + MER63A DNA MER1_type 13 210 0 23 54 0 0 chr12 67935523 67935560 -75850895 + AT_rich Low_complexity Low_complexity 1 37 0 1801 152 7 7 chr12 67935967 67936263 -75850192 + AluJb SINE Alu 1 296 -16 4204 176 33 25 chr12 67936457 67937444 -75849011 - L1MB8 LINE L1 0 6178 5170 204 128 0 26 chr12 67938613 67938652 -75847803 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 212 260 19 104 chr12 67939243 67939397 -75847058 - L3 LINE CR1 -852 725 585 1774 158 65 0 chr12 67939794 67940072 -75846383 + AluJo SINE Alu 1 296 -16 2240 114 0 0 chr12 67941417 67941716 -75844739 + AluSx SINE Alu 1 299 -13 1470 154 3 63 chr12 67942147 67942432 -75844023 + AluJb SINE Alu 39 306 -6 401 262 79 12 chr12 67942704 67942868 -75843587 - MLT1L LTR MaLR -13 602 428 32 0 0 0 chr12 67943928 67943960 -75842495 + AT_rich Low_complexity Low_complexity 1 32 0 318 286 152 37 chr12 67944165 67944382 -75842073 + MIR SINE MIR 11 252 -10 22 0 0 0 chr12 67945267 67945289 -75841166 + AT_rich Low_complexity Low_complexity 1 22 0 291 279 0 0 chr12 67948542 67948603 -75837852 - L2 LINE L2 -1 3271 3211 190 250 0 0 chr12 67948602 67948638 -75837817 + L2 LINE L2 3219 3254 -18 * 800 141 0 16 chr12 67949140 67949268 -75837187 - FRAM SINE Alu -12 164 39 390 57 0 0 chr12 67949472 67949525 -75836930 + (CA)n Simple_repeat Simple_repeat 2 54 0 196 274 0 20 chr12 67951447 67951498 -75834957 + L3 LINE CR1 1524 1573 -4 306 125 28 14 chr12 67951561 67951633 -75834822 + (TA)n Simple_repeat Simple_repeat 2 74 0 291 54 0 0 chr12 67952089 67952126 -75834329 + (CATA)n Simple_repeat Simple_repeat 2 38 0 695 188 0 0 chr12 67952207 67952324 -75834131 + Tigger3(Golem) DNA MER2_type 1 117 -2912 * 4518 105 19 12 chr12 67952315 67953055 -75833400 + Tigger3(Golem) DNA MER2_type 2284 3028 -1 332 247 0 52 chr12 67953078 67953175 -75833280 + L1MC4 LINE L1 6612 6703 -1339 24 53 0 0 chr12 67953181 67953219 -75833236 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr12 67953219 67953240 -75833215 + (CA)n Simple_repeat Simple_repeat 2 22 0 192 97 0 0 chr12 67953247 67953278 -75833177 + (GA)n Simple_repeat Simple_repeat 2 32 0 293 298 19 37 chr12 67953385 67953501 -75832954 + MIR SINE MIR 33 147 -73 183 365 0 27 chr12 67955444 67955518 -75830937 - L2 LINE L2 -1 3271 3200 26 0 0 0 chr12 67955927 67955953 -75830502 + AT_rich Low_complexity Low_complexity 1 26 0 2145 111 0 7 chr12 67956259 67956556 -75829899 - AluSc SINE Alu -14 295 1 210 37 0 0 chr12 67956594 67956621 -75829834 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr12 67956815 67956838 -75829617 + AT_rich Low_complexity Low_complexity 1 23 0 2177 103 6 6 chr12 67957032 67957343 -75829112 - AluSp SINE Alu -1 312 2 2657 80 14 0 chr12 67958010 67958360 -75828095 - THE1A LTR MaLR 0 355 1 11811 91 1 9 chr12 67958362 67959526 -75826929 - THE1A-int LTR MaLR -2 1578 429 2312 58 41 0 chr12 67959526 67959818 -75826637 + AluY SINE Alu 2 305 -6 11811 91 1 9 chr12 67959818 67960244 -75826211 - THE1A-int LTR MaLR -1151 429 1 2822 63 3 0 chr12 67960252 67960602 -75825853 - THE1A LTR MaLR -4 351 1 200 274 0 48 chr12 67963388 67963450 -75823005 + CT-rich Low_complexity Low_complexity 3 61 0 419 313 77 42 chr12 67963729 67964157 -75822298 + L2 LINE L2 1945 2387 -927 461 291 81 27 chr12 67965601 67965749 -75820706 + MER91A DNA MER1_type 35 190 -6 2232 106 0 0 chr12 67966097 67966406 -75820049 + AluSq SINE Alu 1 309 0 5720 17 0 0 chr12 67966418 67967071 -75819384 - L1PA2 LINE L1 -3 6152 5500 465 269 74 46 chr12 67967270 67967445 -75819010 - MIR SINE MIR -25 183 4 547 306 102 22 chr12 67967450 67967725 -75818730 + L3b LINE CR1 1152 1448 -135 195 281 19 131 chr12 67968242 67968402 -75818053 - MIR SINE MIR -107 155 14 25 0 0 0 chr12 67968868 67968893 -75817562 + AT_rich Low_complexity Low_complexity 1 25 0 2222 89 0 54 chr12 67973640 67973956 -75812499 - AluSg SINE Alu -10 300 2 183 214 0 0 chr12 67974050 67974092 -75812363 + L2 LINE L2 3213 3254 -18 452 283 120 19 chr12 67975085 67975343 -75811112 + L1ME4a LINE L1 5827 6110 -11 281 191 29 0 chr12 67975729 67975797 -75810658 + MER116 DNA Mariner 7 76 -4 216 0 0 0 chr12 67975865 67975889 -75810566 + (TG)n Simple_repeat Simple_repeat 1 24 0 2094 92 0 0 chr12 67976018 67976278 -75810177 - AluSx SINE Alu -18 294 35 202 303 125 46 chr12 67976818 67976970 -75809485 + MIR3 SINE MIR 15 178 -30 236 26 0 53 chr12 67977980 67978018 -75808437 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 188 306 20 0 chr12 67978740 67978789 -75807666 + L2 LINE L2 3211 3260 -12 2941 184 46 88 chr12 67979318 67980276 -75806179 + MER63C DNA MER1_type 11 928 -2 289 245 133 70 chr12 67981971 67981999 -75804456 + MIR SINE MIR 106 131 -131 2562 61 0 0 chr12 67981999 67982309 -75804146 - AluY SINE Alu -1 310 1 289 245 133 70 chr12 67982309 67982423 -75804032 + MIR SINE MIR 131 257 -5 2201 106 0 13 chr12 67983091 67983394 -75803061 - AluSq SINE Alu -14 299 1 1215 116 43 5 chr12 67983772 67983979 -75802476 + L1MA3 LINE L1 6090 6304 -1 207 100 0 0 chr12 67984532 67984562 -75801893 + (GA)n Simple_repeat Simple_repeat 2 31 0 1976 120 4 0 chr12 67985173 67985448 -75801007 - AluSx SINE Alu -36 276 1 219 88 0 0 chr12 67985571 67985605 -75800850 + (TG)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr12 67985823 67985848 -75800607 + AT_rich Low_complexity Low_complexity 1 25 0 1749 130 4 8 chr12 67985928 67986182 -75800273 - AluSx SINE Alu -59 253 1 938 142 8 0 chr12 67986182 67986316 -75800139 - AluSq/x SINE Alu -177 135 1 2247 105 3 0 chr12 67986966 67987272 -75799183 + AluSg SINE Alu 2 308 -2 1134 128 0 10 chr12 67987535 67987731 -75798724 - MER41B LTR ERV1 -88 547 354 701 233 39 17 chr12 67988681 67988861 -75797594 - MIR SINE MIR -5 257 74 1177 191 30 4 chr12 67989209 67989439 -75797016 - MER46A DNA MER2_type 0 236 1 2173 112 0 3 chr12 67989456 67989742 -75796713 + AluSx SINE Alu 1 285 -27 654 218 89 22 chr12 67990078 67990257 -75796198 + MIR SINE MIR 71 261 -1 757 213 77 19 chr12 67990851 67991031 -75795424 - MIR SINE MIR -1 261 70 182 298 205 33 chr12 67991031 67991182 -75795273 + MIR3 SINE MIR 4 180 -28 318 132 0 0 chr12 67991953 67992006 -75794449 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 337 304 30 15 chr12 67993010 67993145 -75793310 + MIR3 SINE MIR 54 190 -18 251 215 46 0 chr12 67993807 67993872 -75792583 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 1844 145 3 10 chr12 67994193 67994490 -75791965 + AluJb SINE Alu 2 296 -16 22 35 0 0 chr12 67995778 67995807 -75790648 + AT_rich Low_complexity Low_complexity 1 29 0 754 142 0 0 chr12 67997871 67997984 -75788471 + AluSx SINE Alu 1 113 -200 329 245 97 62 chr12 68001428 68001634 -75784821 - MIR3 SINE MIR -32 230 5 2093 105 7 26 chr12 68002280 68002586 -75783869 + AluSx SINE Alu 1 300 -12 283 286 27 116 chr12 68002742 68002889 -75783566 + L3 LINE CR1 940 1073 -504 248 257 95 38 chr12 68002956 68003061 -75783394 - L2 LINE L2 -2 3311 3201 537 292 54 16 chr12 68003435 68003620 -75782835 + MIR SINE MIR 20 211 -51 205 211 18 18 chr12 68003837 68003894 -75782561 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 324 0 0 0 chr12 68004517 68004553 -75781902 + (A)n Simple_repeat Simple_repeat 1 36 0 1103 147 0 0 chr12 68004553 68004739 -75781716 + AluSx SINE Alu 121 306 0 39 68 0 0 chr12 68005876 68005950 -75780505 + AT_rich Low_complexity Low_complexity 1 74 0 215 260 26 13 chr12 68006472 68006549 -75779906 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 203 347 65 24 chr12 68007076 68007200 -75779255 - L2 LINE L2 -219 3053 2925 350 352 53 34 chr12 68007255 68007519 -75778936 - L2 LINE L2 -485 2829 2561 290 359 67 3 chr12 68007728 68008012 -75778443 - L2 LINE L2 -1155 2159 1858 978 207 95 0 chr12 68008752 68008994 -75777461 - MER58B DNA MER1_type 0 341 77 218 322 32 94 chr12 68009103 68009410 -75777045 + L2 LINE L2 2695 2967 -305 2015 98 18 0 chr12 68009410 68009708 -75776747 - AluSx SINE Alu 0 303 1 218 322 32 94 chr12 68009708 68009798 -75776657 + L2 LINE L2 2967 3061 -211 222 339 92 31 chr12 68009973 68010103 -75776352 + L2 LINE L2 3127 3264 -8 395 319 159 10 chr12 68010245 68010452 -75776003 + MIR SINE MIR 20 257 -5 187 311 68 14 chr12 68012313 68012387 -75774068 - L2 LINE L2 -61 3211 3134 412 290 52 74 chr12 68013699 68014009 -75772446 + L2 LINE L2 3010 3312 -1 2448 76 0 25 chr12 68014215 68014529 -75771926 + AluY SINE Alu 1 306 -5 2159 127 71 35 chr12 68014808 68015232 -75771223 - Tigger2 DNA MER2_type 0 2718 2280 429 159 0 0 chr12 68015230 68015299 -75771156 - Tigger2 DNA MER2_type -2649 69 1 * 285 29 0 0 chr12 68017849 68017883 -75768572 + (TG)n Simple_repeat Simple_repeat 1 34 0 2356 93 0 0 chr12 68018012 68018314 -75768141 + AluSq SINE Alu 1 302 -11 2020 118 0 4 chr12 68018761 68019070 -75767385 - AluSc SINE Alu 0 308 1 257 211 256 11 chr12 68019530 68019620 -75766835 - L2 LINE L2 -5 3308 3197 1927 123 5 123 chr12 68019700 68020031 -75766424 + MER47A DNA MER2_type 1 275 -2048 1714 171 3 30 chr12 68020031 68020354 -75766101 - AluJb SINE Alu 0 312 1 1927 123 5 123 chr12 68020354 68020437 -75766018 + MER47A DNA MER2_type 275 366 0 381 211 13 0 chr12 68020862 68020938 -75765517 + MER94 DNA DNA 1 77 -57 1922 185 46 30 chr12 68023132 68023592 -75762863 + MLT1C LTR MaLR 1 467 0 427 281 62 27 chr12 68023685 68023831 -75762624 + MIR3 SINE MIR 18 168 -40 438 20 0 0 chr12 68024412 68024463 -75761992 + (CAT)n Simple_repeat Simple_repeat 2 52 0 324 0 0 0 chr12 68024672 68024708 -75761747 + (TG)n Simple_repeat Simple_repeat 1 36 0 359 89 18 0 chr12 68024708 68024764 -75761691 + (GA)n Simple_repeat Simple_repeat 2 58 0 1214 59 13 0 chr12 68025432 68025584 -75760871 + L1PA10 LINE L1 5999 6152 -16 750 242 9 41 chr12 68025595 68025814 -75760641 + L1MD2 LINE L1 6082 6293 -66 222 136 0 68 chr12 68026371 68026415 -75760040 - MIR SINE MIR -6 256 216 24 0 0 0 chr12 68027634 68027658 -75758797 + AT_rich Low_complexity Low_complexity 1 24 0 2084 116 0 20 chr12 68027658 68027952 -75758503 - AluSx SINE Alu -24 288 1 340 278 56 0 chr12 68028204 68028312 -75758143 - MIR SINE MIR -98 164 51 663 161 201 0 chr12 68028484 68028633 -75757822 - AluY SINE Alu -7 304 126 2208 113 0 3 chr12 68028634 68028935 -75757520 - AluSq SINE Alu -13 300 1 330 313 86 8 chr12 68028998 68029126 -75757329 - MIR SINE MIR -108 154 17 * 434 336 31 35 chr12 68029124 68029380 -75757075 + L3b LINE CR1 1245 1499 -84 22 0 0 0 chr12 68029434 68029456 -75756999 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 68029625 68029654 -75756801 + AT_rich Low_complexity Low_complexity 1 29 0 2085 92 89 0 chr12 68030148 68030430 -75756025 + AluSq SINE Alu 1 307 -6 2745 13 0 0 chr12 68031291 68031592 -75754863 - AluYb8 SINE Alu -17 301 1 196 254 18 18 chr12 68032327 68032382 -75754073 - L2 LINE L2 -2 3270 3216 414 303 222 15 chr12 68032400 68032598 -75753857 - MIR SINE MIR -16 246 8 208 318 32 0 chr12 68032611 68032674 -75753781 - L2 LINE L2 -50 3222 3158 181 190 0 35 chr12 68033048 68033106 -75753349 + (TA)n Simple_repeat Simple_repeat 2 57 0 193 282 56 14 chr12 68034391 68034462 -75751993 - MIR SINE MIR -124 138 65 1972 136 7 0 chr12 68034597 68034913 -75751542 + AluSx SINE Alu 1 318 0 2213 124 0 7 chr12 68036093 68036400 -75750055 - AluSx SINE Alu -7 305 1 405 39 0 0 chr12 68036450 68036501 -75749954 + (TG)n Simple_repeat Simple_repeat 2 52 0 890 219 92 9 chr12 68037808 68038036 -75748419 - MIR SINE MIR -1 261 15 1115 262 45 25 chr12 68039542 68039978 -75746477 + MLT1G LTR MaLR 109 589 -1 1112 321 100 22 chr12 68039987 68040495 -75745960 + L3 LINE CR1 1016 1563 -14 297 128 0 0 chr12 68041156 68041203 -75745252 + (A)n Simple_repeat Simple_repeat 1 47 0 198 167 0 0 chr12 68042829 68042865 -75743590 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 856 232 34 61 chr12 68042969 68043232 -75743223 - MIR SINE MIR 0 262 7 361 256 107 33 chr12 68043552 68043673 -75742782 + MIR SINE MIR 20 149 -113 2251 52 0 0 chr12 68043781 68044050 -75742405 - AluY SINE Alu -3 308 40 261 250 0 17 chr12 68045458 68045518 -75740937 + L2 LINE L2 3209 3267 -5 625 192 6 6 chr12 68045518 68045674 -75740781 + GA-rich Low_complexity Low_complexity 1 156 0 201 333 27 13 chr12 68045707 68045782 -75740673 - MIR3 SINE MIR -10 198 123 390 328 118 26 chr12 68045999 68046228 -75740227 + MIR SINE MIR 2 251 -11 210 71 0 0 chr12 68048972 68049000 -75737455 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr12 68050869 68050896 -75735559 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 68054556 68054577 -75731878 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 68054605 68054628 -75731827 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 68054641 68054670 -75731785 + GC_rich Low_complexity Low_complexity 1 29 0 187 31 62 0 chr12 68055098 68055130 -75731325 + GA-rich Low_complexity Low_complexity 2 35 0 243 197 0 33 chr12 68055137 68055198 -75731257 + G-rich Low_complexity Low_complexity 5 63 0 * 245 197 0 30 chr12 68055166 68055232 -75731223 + GA-rich Low_complexity Low_complexity 1 64 0 494 16 16 0 chr12 68055396 68055459 -75730996 + (GA)n Simple_repeat Simple_repeat 1 64 0 272 83 21 0 chr12 68055716 68055764 -75730691 + (TG)n Simple_repeat Simple_repeat 1 49 0 509 0 16 0 chr12 68056091 68056152 -75730303 + (GA)n Simple_repeat Simple_repeat 1 62 0 272 83 21 0 chr12 68056409 68056457 -75729998 + (TG)n Simple_repeat Simple_repeat 1 49 0 377 375 0 0 chr12 68057015 68057191 -75729264 + (CA)n Simple_repeat Simple_repeat 1 176 0 305 219 133 0 chr12 68058930 68059035 -75727420 - MER112 DNA MER1_type -1 259 141 231 221 25 115 chr12 68059084 68059206 -75727249 + MER104 DNA Tc2 18 128 -52 2517 110 18 34 chr12 68059209 68059590 -75726865 + THE1C LTR MaLR 1 375 0 225 0 0 0 chr12 68059650 68059675 -75726780 + (T)n Simple_repeat Simple_repeat 1 25 0 1952 170 0 0 chr12 68060150 68060435 -75726020 + AluJo SINE Alu 1 288 -24 225 0 0 0 chr12 68060435 68060460 -75725995 + (CA)n Simple_repeat Simple_repeat 2 26 0 1952 170 0 0 chr12 68060460 68060480 -75725975 + AluJo SINE Alu 287 306 -6 21 0 0 0 chr12 68060591 68060612 -75725843 + AT_rich Low_complexity Low_complexity 1 21 0 2172 69 47 0 chr12 68060622 68060922 -75725533 + AluY SINE Alu 1 313 0 198 227 23 0 chr12 68061288 68061332 -75725123 - L2 LINE L2 -2 3311 3267 1820 200 64 55 chr12 68061622 68062083 -75724372 + MLT1E2 LTR MaLR 107 626 0 690 250 115 79 chr12 68062447 68063032 -75723423 + MLT1G1 LTR MaLR 1 591 -4 411 344 91 0 chr12 68063100 68063330 -75723125 + L2 LINE L2 2451 2701 -613 765 75 9 9 chr12 68063540 68063670 -75722785 - AluSp/q SINE Alu 0 313 191 5803 167 24 48 chr12 68063766 68065157 -75721298 - L1MC1 LINE L1 -6 6327 4905 261 0 0 0 chr12 68065157 68065186 -75721269 + (TG)n Simple_repeat Simple_repeat 2 30 0 4306 104 19 27 chr12 68065189 68065825 -75720630 - L1PB1 LINE L1 -7 6144 5514 5803 167 24 48 chr12 68065825 68066008 -75720447 - L1MC1 LINE L1 -1430 4903 4798 2447 44 0 10 chr12 68066008 68066306 -75720149 - AluY SINE Alu -16 295 1 5803 167 24 48 chr12 68066306 68066360 -75720095 - L1MC1 LINE L1 -1535 4798 4744 2231 124 15 0 chr12 68066362 68066819 -75719636 + L1M1 LINE L1 5137 5602 -698 3707 183 47 41 chr12 68066820 68067343 -75719112 - L1MCa LINE L1 -3641 2785 2267 2391 66 3 13 chr12 68067343 68067646 -75718809 - AluY SINE Alu -11 300 1 3707 183 47 41 chr12 68067646 68068500 -75717955 - L1MCa LINE L1 -4159 2267 1291 7129 166 36 24 chr12 68068613 68070030 -75716425 - L1MCa LINE L1 -4751 1675 242 26 0 0 0 chr12 68070234 68070260 -75716195 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr12 68070529 68070550 -75715905 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 994 293 62 31 chr12 68070860 68071345 -75715110 - LTR33 LTR ERVL 0 521 22 205 29 59 0 chr12 68071842 68071876 -75714579 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 4014 179 36 8 chr12 68072591 68073321 -75713134 + L1MB8 LINE L1 5428 6177 -1 21 0 0 0 chr12 68073594 68073615 -75712840 + AT_rich Low_complexity Low_complexity 1 21 0 488 280 86 17 chr12 68073891 68074123 -75712332 - L1MC4a LINE L1 -1968 5840 5593 1686 166 24 24 chr12 68074458 68074754 -75711701 + AluJo SINE Alu 1 296 -16 32 0 0 0 chr12 68075042 68075074 -75711381 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr12 68075074 68075096 -75711359 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2190 72 32 0 chr12 68075098 68075375 -75711080 - AluY SINE Alu -25 286 1 2149 113 0 10 chr12 68075377 68075677 -75710778 - AluSx SINE Alu -13 299 3 209 235 294 0 chr12 68076176 68076261 -75710194 + L2 LINE L2 3203 3312 -1 2318 80 7 0 chr12 68076571 68076860 -75709595 - AluY SINE Alu -20 291 1 2370 134 27 8 chr12 68077116 68077481 -75708974 - L1PA16 LINE L1 -1 6165 5794 671 293 105 31 chr12 68077806 68078195 -75708260 + LTR16C LTR ERVL 74 491 0 318 232 21 32 chr12 68078200 68078295 -75708160 + LTR67 LTR ERVL 448 541 -16 204 250 0 0 chr12 68078295 68078343 -75708112 + (TA)n Simple_repeat Simple_repeat 1 48 0 204 258 52 52 chr12 68078689 68078786 -75707669 - L2 LINE L2 -352 2920 2824 318 219 14 14 chr12 68079101 68079174 -75707281 + MIR SINE MIR 163 235 -27 1463 176 6 60 chr12 68080074 68080392 -75706063 - AluJo SINE Alu -11 301 1 267 338 69 28 chr12 68080608 68080753 -75705702 - L2 LINE L2 -7 3265 3115 209 309 64 0 chr12 68080884 68080978 -75705477 - L2 LINE L2 -436 2878 2779 258 238 0 33 chr12 68082217 68082339 -75704116 + CT-rich Low_complexity Low_complexity 3 120 0 1608 201 71 71 chr12 68082809 68083276 -75703179 - MLT1C LTR MaLR 0 467 1 1821 128 3 56 chr12 68083326 68083632 -75702823 + AluJb SINE Alu 1 290 -22 1887 171 0 0 chr12 68085749 68086042 -75700413 + AluJo SINE Alu 1 293 -19 2074 38 88 4 chr12 68086205 68086500 -75699955 - AluY SINE Alu 0 317 1 233 200 73 0 chr12 68086576 68086631 -75699824 - MIR SINE MIR -48 214 156 2026 138 3 0 chr12 68086684 68086988 -75699467 - AluSp SINE Alu -8 305 1 426 307 126 57 chr12 68087557 68087657 -75698798 + MLT1J LTR MaLR 4 96 -415 1826 135 6 68 chr12 68087657 68087983 -75698472 + AluSx SINE Alu 1 306 -6 426 307 126 57 chr12 68087983 68088341 -75698114 + MLT1J LTR MaLR 96 494 -17 22 35 0 0 chr12 68089167 68089196 -75697259 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr12 68089294 68089319 -75697136 + (A)n Simple_repeat Simple_repeat 1 25 0 312 333 48 0 chr12 68089882 68090008 -75696447 + MIR SINE MIR 96 227 -35 198 0 0 0 chr12 68090437 68090459 -75695996 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 518 215 0 0 chr12 68091395 68091488 -75694967 - MLT1F1 LTR MaLR -103 464 372 2876 121 15 5 chr12 68091490 68091902 -75694553 - MER57B LTR ERV1 -15 419 4 1462 201 80 0 chr12 68091905 68092224 -75694231 - MLT1F1 LTR MaLR -193 374 1 627 293 58 15 chr12 68092655 68092860 -75693595 - MIR SINE MIR -30 232 19 222 332 99 58 chr12 68092951 68093174 -75693281 - L2 LINE L2 -224 3048 2817 1849 269 22 16 chr12 68093298 68093745 -75692710 + LTR16A LTR ERVL 1 450 0 2797 267 132 52 chr12 68093746 68094353 -75692102 + HERV16 LTR ERVL 2 559 -4437 1540 219 3 7 chr12 68094353 68094663 -75691792 + AluJb SINE Alu 2 310 -2 2797 267 132 52 chr12 68094663 68095736 -75690719 + HERV16 LTR ERVL 559 1887 -3109 253 167 121 0 chr12 68095965 68096031 -75690424 + MIR SINE MIR 175 248 -14 22 0 0 0 chr12 68096049 68096071 -75690384 + AT_rich Low_complexity Low_complexity 1 22 0 253 183 50 17 chr12 68096117 68096177 -75690278 + Charlie8 DNA MER1_type 38 99 -2318 23 54 0 0 chr12 68096936 68096973 -75689482 + AT_rich Low_complexity Low_complexity 1 37 0 811 188 0 0 chr12 68097239 68097410 -75689045 - FLAM_C SINE Alu 0 171 1 1971 177 19 16 chr12 68098620 68098987 -75687468 - MER63B DNA MER1_type -68 368 1 2155 143 122 13 chr12 68100024 68100410 -75686045 + MSTA LTR MaLR 1 428 0 1813 198 55 31 chr12 68100633 68101149 -75685306 - MLT1E3 LTR MaLR -1 623 1 302 264 221 0 chr12 68101176 68101339 -75685116 + MIR SINE MIR 54 252 -10 386 261 63 0 chr12 68101557 68101668 -75684787 - MIR SINE MIR -75 187 70 639 75 0 0 chr12 68101738 68101832 -75684623 + (TG)n Simple_repeat Simple_repeat 2 95 0 1491 89 5 5 chr12 68102127 68102330 -75684125 + L1PA13 LINE L1 5961 6163 0 330 206 88 15 chr12 68102690 68102826 -75683629 - Zaphod DNA AcHobo -3269 762 617 338 144 25 4 chr12 68102851 68102933 -75683522 - L1MA7 LINE L1 0 6300 6205 261 119 0 0 chr12 68103042 68103084 -75683371 + (T)n Simple_repeat Simple_repeat 1 42 0 658 147 0 0 chr12 68103103 68103198 -75683257 + FRAM SINE Alu 61 155 -21 180 77 0 0 chr12 68103203 68103229 -75683226 + (CAA)n Simple_repeat Simple_repeat 3 28 0 782 257 106 60 chr12 68103657 68104108 -75682347 + MLT1J LTR MaLR 39 510 -1 873 273 122 46 chr12 68104955 68105416 -75681039 + MLT1J LTR MaLR 1 496 -15 1591 183 3 37 chr12 68105472 68105772 -75680683 + AluJb SINE Alu 1 290 -22 383 335 32 11 chr12 68105789 68105977 -75680478 + L3 LINE CR1 1187 1378 -199 251 299 39 0 chr12 68106098 68106175 -75680280 + L2 LINE L2 3147 3226 -46 884 148 0 7 chr12 68106878 68107013 -75679442 - AluJb SINE Alu -15 297 164 1377 122 5 36 chr12 68107507 68107729 -75678726 + Tigger5 DNA MER2_type 2039 2253 -70 249 83 0 0 chr12 68109877 68109913 -75676542 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 1961 117 4 29 chr12 68109915 68110196 -75676259 - AluSx SINE Alu -38 274 1 2216 94 17 3 chr12 68110211 68110508 -75675947 - AluSg SINE Alu -7 303 3 264 319 11 11 chr12 68110511 68110605 -75675850 - MLT1L LTR MaLR -176 439 346 239 206 59 15 chr12 68110912 68110980 -75675475 - MLT1J LTR MaLR -331 180 110 1067 296 88 19 chr12 68111420 68111853 -75674602 - L2 LINE L2 -33 3280 2818 460 172 0 46 chr12 68112067 68112154 -75674301 + AluJ/FRAM SINE Alu 216 298 -14 490 297 8 0 chr12 68112414 68112532 -75673923 - MLT1G LTR MaLR -60 530 412 400 241 121 42 chr12 68112761 68112927 -75673528 - MLT1G LTR MaLR -305 285 107 1994 141 3 0 chr12 68113069 68113366 -75673089 - AluSx SINE Alu -14 298 1 180 0 0 0 chr12 68113454 68113474 -75672981 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2414 54 10 3 chr12 68116031 68116328 -75670127 - AluY SINE Alu -12 299 1 26 50 0 0 chr12 68116880 68116920 -75669535 + AT_rich Low_complexity Low_complexity 1 40 0 231 36 0 0 chr12 68117088 68117116 -75669339 + (A)n Simple_repeat Simple_repeat 1 28 0 236 183 100 17 chr12 68117811 68117871 -75668584 - L3 LINE CR1 -18 1559 1495 1030 227 21 0 chr12 68117939 68118133 -75668322 - MER58A DNA MER1_type 0 224 27 2016 104 55 0 chr12 68118385 68118674 -75667781 + AluSx SINE Alu 2 306 -6 635 352 23 6 chr12 68118932 68119169 -75667286 + MIR SINE MIR 3 241 -21 300 27 0 0 chr12 68119256 68119293 -75667162 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 321 291 215 27 chr12 68119896 68120119 -75666336 + L3 LINE CR1 1269 1533 -44 443 336 48 80 chr12 68120135 68120486 -75665969 - L2 LINE L2 -4 3268 2929 213 312 97 0 chr12 68120496 68120589 -75665866 + L3 LINE CR1 554 655 -922 551 337 128 0 chr12 68120915 68121298 -75665157 + L3 LINE CR1 902 1333 -244 395 311 144 50 chr12 68121793 68122015 -75664440 + L3 LINE CR1 1334 1576 -1 256 33 0 0 chr12 68122113 68122143 -75664312 - LTR6A LTR ERV1 -462 102 73 21 0 0 0 chr12 68123053 68123074 -75663381 + AT_rich Low_complexity Low_complexity 1 21 0 1284 251 180 30 chr12 68123491 68123997 -75662458 - MLT1G1 LTR MaLR -6 589 8 235 267 0 0 chr12 68124753 68124804 -75661651 + polypurine Low_complexity Low_complexity 1 51 0 2298 116 0 0 chr12 68128171 68128474 -75657981 + AluSg SINE Alu 1 303 -7 1971 122 10 10 chr12 68128850 68129145 -75657310 + AluSx SINE Alu 1 295 -17 1910 134 30 20 chr12 68129249 68129548 -75656907 - AluSx SINE Alu -10 302 1 540 216 344 4 chr12 68129712 68129827 -75656628 + L2 LINE L2 2967 3042 -271 2172 110 7 7 chr12 68129827 68130136 -75656319 - AluSc SINE Alu 0 309 1 540 216 344 4 chr12 68130136 68130279 -75656176 + L2 LINE L2 3042 3313 0 455 332 102 35 chr12 68130327 68130700 -75655755 + L2 LINE L2 2237 2634 -680 * 894 318 111 24 chr12 68130677 68130870 -75655585 + L2 LINE L2 2847 3022 -291 1258 175 0 0 chr12 68130870 68131076 -75655379 - L1PB4 LINE L1 -1 6155 5950 894 318 111 24 chr12 68131076 68131307 -75655148 + L2 LINE L2 3022 3308 -5 193 329 61 0 chr12 68131305 68131387 -75655068 + L2 LINE L2 2619 2705 -609 * 257 238 0 32 chr12 68131459 68131522 -75654933 - MIR SINE MIR -154 108 48 383 276 40 53 chr12 68131595 68131747 -75654708 + L2 LINE L2 2904 3053 -219 2119 135 3 0 chr12 68131971 68132275 -75654180 - AluSx SINE Alu -7 305 1 649 232 122 53 chr12 68132374 68132637 -75653818 - MLT1J LTR MaLR -2 509 229 984 292 119 56 chr12 68132782 68133296 -75653159 + MLT1H1 LTR MaLR 10 555 0 1809 143 44 0 chr12 68133465 68133737 -75652718 - AluJb SINE Alu -26 286 3 1647 167 10 39 chr12 68133852 68134157 -75652298 - AluJb SINE Alu -16 296 1 1639 135 6 67 chr12 68134342 68134669 -75651786 + L1MB3 LINE L1 5856 6162 -21 2228 102 7 0 chr12 68134680 68134974 -75651481 - AluSq SINE Alu -17 296 1 2223 99 10 0 chr12 68136693 68136995 -75649460 - AluY SINE Alu -6 305 1 22 35 0 0 chr12 68139179 68139208 -75647247 + AT_rich Low_complexity Low_complexity 1 29 0 2141 139 0 3 chr12 68140034 68140344 -75646111 - AluSg SINE Alu -1 309 1 207 0 0 0 chr12 68140825 68140848 -75645607 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 199 296 184 0 chr12 68140890 68141015 -75645440 + MIR SINE MIR 69 216 -46 384 183 0 28 chr12 68141160 68141231 -75645224 + Tigger2 DNA MER2_type 1 69 -2649 * 2521 159 23 11 chr12 68141221 68141661 -75644794 + Tigger2 DNA MER2_type 2273 2717 -1 22 0 0 73 chr12 68141661 68141702 -75644753 + AT_rich Low_complexity Low_complexity 1 38 0 220 336 45 27 chr12 68141814 68141924 -75644531 + MER5B DNA MER1_type 67 178 0 2311 113 139 16 chr12 68142019 68142056 -75644399 - MSTA LTR MaLR 0 428 397 2182 79 22 4 chr12 68142056 68142377 -75644078 + AluY SINE Alu 1 326 0 2311 113 139 16 chr12 68142377 68142719 -75643736 - MSTA LTR MaLR -31 397 1 911 78 0 0 chr12 68143330 68143445 -75643010 - L1MA3 LINE L1 0 6305 6191 1222 123 5 66 chr12 68146867 68147078 -75639377 - AluJb SINE Alu 0 312 115 1747 167 0 7 chr12 68147078 68147371 -75639084 + AluJb SINE Alu 1 291 -21 257 152 0 0 chr12 68147371 68147417 -75639038 - FAM SINE Alu -6 173 128 431 226 109 15 chr12 68147484 68147621 -75638834 - MIR SINE MIR -32 230 81 751 168 15 29 chr12 68148796 68148933 -75637522 + FLAM_A SINE Alu 2 136 -6 3175 177 66 62 chr12 68149382 68149740 -75636715 - LTR8A LTR ERV1 0 727 372 2296 82 31 0 chr12 68149740 68150032 -75636423 + AluY SINE Alu 1 301 -10 3175 177 66 62 chr12 68150032 68150397 -75636058 - LTR8A LTR ERV1 -355 372 1 371 288 68 31 chr12 68151430 68151621 -75634834 + MIR SINE MIR 15 212 -50 214 319 62 21 chr12 68151761 68151905 -75634550 - L2 LINE L2 -232 3040 2891 2403 64 0 10 chr12 68152610 68152905 -75633550 - AluY SINE Alu -3 308 17 3017 132 14 2 chr12 68156316 68156739 -75629716 - MSTA LTR MaLR 0 428 1 1248 226 81 52 chr12 68156770 68157178 -75629277 + HsTC2a DNA Tc2 4 423 -321 347 345 40 18 chr12 68157197 68157472 -75628983 + L1M3d LINE L1 1 281 -5610 1497 247 98 73 chr12 68157501 68157684 -75628771 + L1M3de LINE L1 8 185 -6468 2166 125 0 0 chr12 68157684 68157980 -75628475 + AluSx SINE Alu 3 298 -14 1497 247 98 73 chr12 68157980 68158107 -75628348 + L1M3de LINE L1 185 307 -6346 1816 147 7 17 chr12 68158107 68158400 -75628055 - AluJo SINE Alu -12 300 11 1497 247 98 73 chr12 68158400 68158797 -75627658 + L1M3de LINE L1 307 790 -5863 726 237 22 117 chr12 68158777 68158993 -75627462 + L1 LINE L1 31 266 -6387 * 2055 134 7 0 chr12 68158993 68159320 -75627135 + AluSx SINE Alu 1 329 0 726 237 22 117 chr12 68159320 68159332 -75627123 + L1 LINE L1 266 278 -6375 2067 96 7 0 chr12 68159332 68159636 -75626819 + AluSx SINE Alu 9 314 0 726 237 22 117 chr12 68159636 68159680 -75626775 + L1 LINE L1 278 577 -6076 1162 72 33 0 chr12 68159697 68159849 -75626606 - BC200 scRNA scRNA -42 158 2 6648 245 46 19 chr12 68159853 68160713 -75625742 + L1 LINE L1 618 1454 -5278 2173 75 30 37 chr12 68160713 68161008 -75625447 + AluSc SINE Alu 1 293 -16 6648 245 46 19 chr12 68161008 68163120 -75623335 + L1 LINE L1 1454 3508 -3224 603 214 0 64 chr12 68163120 68163260 -75623195 - FLAM_A SINE Alu -2 131 1 6648 245 46 19 chr12 68163260 68163437 -75623018 + L1 LINE L1 3508 3679 -3053 3408 125 26 6 chr12 68163437 68163941 -75622514 + MER75 DNA T2_type 1 514 0 6648 245 46 19 chr12 68163941 68164048 -75622407 + L1 LINE L1 3679 3631 -3101 354 23 0 0 chr12 68164048 68164091 -75622364 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6648 245 46 19 chr12 68164091 68164151 -75622304 + L1 LINE L1 3630 3687 -3045 6834 144 37 64 chr12 68164153 68164614 -75621841 + L1 LINE L1 4500 4972 -1760 2223 78 4 4 chr12 68164614 68164895 -75621560 - AluSp SINE Alu -32 281 1 6834 144 37 64 chr12 68164895 68165071 -75621384 + L1 LINE L1 4972 5151 -1581 357 24 0 0 chr12 68165071 68165113 -75621342 + (CA)n Simple_repeat Simple_repeat 1 42 0 6834 144 37 64 chr12 68165113 68165904 -75620551 + L1 LINE L1 5151 5890 -842 1841 150 3 3 chr12 68166268 68166554 -75619901 - AluJo SINE Alu -26 286 1 21 0 0 0 chr12 68166640 68166661 -75619794 + AT_rich Low_complexity Low_complexity 1 21 0 6081 96 13 0 chr12 68166900 68167727 -75618728 - L1PA10 LINE L1 0 6168 5331 467 293 31 40 chr12 68168515 68168737 -75617718 + L2 LINE L2 2927 3146 -167 241 188 0 21 chr12 68168737 68168785 -75617670 + CT-rich Low_complexity Low_complexity 1 47 0 282 116 0 0 chr12 68168802 68168845 -75617610 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 336 283 61 0 chr12 68168868 68168967 -75617488 + L2 LINE L2 3203 3307 -6 216 0 0 0 chr12 68168972 68168996 -75617459 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 195 266 138 11 chr12 68169606 68169700 -75616755 - L2 LINE L2 -1244 2070 1965 198 0 0 0 chr12 68170540 68170562 -75615893 + (TA)n Simple_repeat Simple_repeat 2 23 0 240 136 0 0 chr12 68170600 68170644 -75615811 - L1M1 LINE L1 -678 5622 5579 * 291 155 107 36 chr12 68170635 68170719 -75615736 + L1MA5 LINE L1 5285 5374 -931 4828 134 14 61 chr12 68170732 68171228 -75615227 + L1MA5 LINE L1 5472 5911 -389 2298 100 0 7 chr12 68171228 68171529 -75614926 + AluSg SINE Alu 1 299 -11 4828 134 14 61 chr12 68171529 68171898 -75614557 + L1MA5 LINE L1 5911 6296 -4 1066 219 52 17 chr12 68171898 68172185 -75614270 + HsTC2 DNA Tc2 1602 1898 0 2216 113 0 0 chr12 68173069 68173362 -75613093 - AluSg SINE Alu -17 293 1 268 237 225 0 chr12 68173430 68173544 -75612911 + MIR SINE MIR 3 137 -71 261 240 103 83 chr12 68173676 68173807 -75612648 - L1ME LINE L1 -397 5724 5597 2012 118 11 4 chr12 68173807 68174119 -75612336 - AluSx SINE Alu 0 314 1 261 240 103 83 chr12 68174119 68174391 -75612064 - L1ME LINE L1 -524 5597 5313 538 58 0 0 chr12 68174544 68174613 -75611842 + Alu SINE Alu 1 69 -240 207 307 7 36 chr12 68174758 68174895 -75611560 + GA-rich Low_complexity Low_complexity 5 137 0 * 224 315 11 17 chr12 68174854 68175032 -75611423 + A-rich Low_complexity Low_complexity 3 179 0 * 255 275 21 14 chr12 68174899 68175041 -75611414 + (CAAGA)n Simple_repeat Simple_repeat 5 147 0 417 120 33 65 chr12 68175061 68175153 -75611302 + AluY SINE Alu 210 298 -13 330 340 69 21 chr12 68175473 68175617 -75610838 + L2 LINE L2 2709 2859 -455 333 366 124 33 chr12 68175650 68175981 -75610474 + L2 LINE L2 2910 3270 -2 2211 208 34 34 chr12 68178402 68178595 -75607860 + MLT1D LTR MaLR 1 193 -312 1945 130 7 39 chr12 68178595 68178903 -75607552 + AluSx SINE Alu 1 298 -14 2211 208 34 34 chr12 68178903 68179214 -75607241 + MLT1D LTR MaLR 192 505 0 2630 134 30 26 chr12 68179448 68179874 -75606581 + MSTA LTR MaLR 1 428 0 1684 176 7 0 chr12 68179951 68180224 -75606231 + AluJb SINE Alu 9 283 -29 1576 157 42 28 chr12 68180387 68180673 -75605782 + AluJo SINE Alu 1 290 -22 248 208 0 0 chr12 68181023 68181071 -75605384 - MIR SINE MIR -131 77 30 458 299 26 0 chr12 68181844 68181961 -75604494 - L2 LINE L2 0 3272 3153 228 333 122 0 chr12 68182464 68182554 -75603901 - L2 LINE L2 -17 3255 3155 505 281 64 30 chr12 68182863 68183066 -75603389 + MIR SINE MIR 20 229 -33 1980 122 0 61 chr12 68183352 68183679 -75602776 + AluSg SINE Alu 1 307 -3 634 216 183 9 chr12 68183689 68183902 -75602553 - MER20B DNA MER1_type -20 763 514 2162 119 0 0 chr12 68184086 68184380 -75602075 + AluSg1 SINE Alu 1 294 -15 6881 109 11 5 chr12 68184458 68185460 -75600995 - L1MA6 LINE L1 0 6300 5293 222 118 0 0 chr12 68185471 68185505 -75600950 + (T)n Simple_repeat Simple_repeat 1 34 0 1805 66 9 4 chr12 68186126 68186352 -75600103 - AluY SINE Alu -12 299 73 1349 305 62 2 chr12 68186376 68186842 -75599613 - MER20B DNA MER1_type -289 494 1 417 188 0 0 chr12 68187063 68187148 -75599307 + (TG)n Simple_repeat Simple_repeat 2 86 0 1862 147 4 7 chr12 68187152 68187431 -75599024 - AluJo SINE Alu -32 280 3 372 43 0 0 chr12 68187584 68187630 -75598825 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2169 109 13 20 chr12 68187630 68187933 -75598522 - AluSg SINE Alu -9 301 1 545 236 46 8 chr12 68190419 68190577 -75595878 - MIR SINE MIR -50 212 46 609 290 12 49 chr12 68190904 68191149 -75595306 - L1ME3A LINE L1 -333 5837 5602 804 273 95 35 chr12 68191157 68191665 -75594790 - L1ME3A LINE L1 -633 5531 5055 2172 106 0 53 chr12 68191665 68191987 -75594468 - AluSx SINE Alu 0 312 8 804 273 95 35 chr12 68191987 68192378 -75594077 - L1ME3A LINE L1 -1109 5055 4573 656 256 24 0 chr12 68192425 68192589 -75593866 + L2 LINE L2 3146 3313 0 474 83 0 0 chr12 68192934 68193006 -75593449 + (TC)n Simple_repeat Simple_repeat 1 72 0 1766 68 0 13 chr12 68193010 68193245 -75593210 - AluY SINE Alu -39 272 41 2054 78 0 84 chr12 68193247 68193568 -75592887 - AluSx SINE Alu -18 294 1 533 297 172 7 chr12 68193583 68193856 -75592599 - L2 LINE L2 -910 2404 2087 2544 58 3 0 chr12 68194379 68194507 -75591948 + AluY SINE Alu 1 127 -184 216 0 0 0 chr12 68194507 68194531 -75591924 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2544 58 3 0 chr12 68194531 68194711 -75591744 + AluY SINE Alu 127 310 -1 510 114 0 0 chr12 68195976 68196055 -75590400 + (GGGGA)n Simple_repeat Simple_repeat 1 79 0 545 124 0 0 chr12 68196173 68196262 -75590193 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 24 67 0 0 chr12 68197054 68197099 -75589356 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr12 68197149 68197190 -75589265 + GC_rich Low_complexity Low_complexity 1 41 0 193 278 98 45 chr12 68197705 68197838 -75588617 + L2 LINE L2 3173 3312 -1 671 260 62 61 chr12 68198421 68198788 -75587667 - L1ME2 LINE L1 -283 5881 5487 5488 139 92 73 chr12 68198788 68200336 -75586119 + pTR5 LTR ERV1 745 2438 0 251 159 0 23 chr12 68200475 68200519 -75585936 + MER3 DNA MER1_type 1 43 -166 346 273 86 39 chr12 68200888 68201016 -75585439 + L2 LINE L2 3180 3313 0 249 212 47 47 chr12 68201503 68201588 -75584867 - MLT1L LTR MaLR -336 279 195 1806 217 16 16 chr12 68202671 68203045 -75583410 + MLT1A2 LTR MaLR 1 374 0 306 0 0 0 chr12 68203125 68203159 -75583296 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 406 98 0 0 chr12 68203184 68203235 -75583220 - AluJ/FLAM SINE Alu -213 99 49 1741 86 0 21 chr12 68203332 68203566 -75582889 + AluSq SINE Alu 73 301 -12 1314 256 52 77 chr12 68203566 68204317 -75582138 + L1MEc LINE L1 815 1546 -4850 2050 135 0 13 chr12 68204804 68205108 -75581347 - AluSx SINE Alu -12 300 1 693 287 39 31 chr12 68205157 68205415 -75581040 + MIR SINE MIR 3 262 0 821 209 0 0 chr12 68205852 68206000 -75580455 - AluJb SINE Alu -30 282 135 188 341 47 0 chr12 68206555 68206640 -75579815 - MIR SINE MIR -31 231 143 8367 40 1 3 chr12 68207208 68208258 -75578197 - L1P LINE L1 -2376 3770 2723 1704 173 11 7 chr12 68208926 68209210 -75577245 - AluJb SINE Alu -26 286 2 548 209 15 127 chr12 68209543 68209622 -75576833 + L1MC5 LINE L1 6737 6823 -1138 2364 130 33 28 chr12 68209622 68209983 -75576472 + THE1B LTR MaLR 1 363 -1 548 209 15 127 chr12 68209983 68210171 -75576284 + L1MC5 LINE L1 6823 6974 -987 2176 122 7 3 chr12 68210171 68210475 -75575980 + AluSq SINE Alu 1 305 -8 5373 72 0 0 chr12 68210591 68211269 -75575186 - L1P LINE L1 -5467 679 2 231 94 38 19 chr12 68211780 68211833 -75574622 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 7379 90 2 0 chr12 68212960 68213965 -75572490 + L1P LINE L1 1178 2184 -3962 1611 172 20 40 chr12 68214066 68214363 -75572092 + AluJb SINE Alu 6 296 -16 844 204 121 0 chr12 68215304 68215510 -75570945 + L1MB8 LINE L1 5943 6173 -5 413 177 0 0 chr12 68215513 68215592 -75570863 + MIR SINE MIR 183 261 -1 438 314 61 9 chr12 68215818 68216047 -75570408 + L1MC4a LINE L1 5694 5934 -1874 348 203 0 0 chr12 68216317 68216376 -75570079 + AluJ/FLAM SINE Alu 1 59 -243 267 114 0 0 chr12 68216620 68216664 -75569791 + (CGG)n Simple_repeat Simple_repeat 3 46 0 205 358 0 9 chr12 68216951 68217060 -75569395 + C-rich Low_complexity Low_complexity 4 111 0 638 318 54 19 chr12 68217599 68217857 -75568598 + HERVL LTR ERVL 4190 4456 -1198 2570 175 21 0 chr12 68217894 68218312 -75568143 - MSTC LTR MaLR 0 428 2 606 315 6 11 chr12 68218313 68218494 -75567961 + HERVL LTR ERVL 4494 4673 -1091 273 177 53 18 chr12 68218933 68219046 -75567409 + (TA)n Simple_repeat Simple_repeat 2 118 0 1933 159 7 0 chr12 68219048 68219344 -75567111 - AluSx SINE Alu -14 298 1 27 81 0 0 chr12 68219370 68219432 -75567023 + AT_rich Low_complexity Low_complexity 1 62 0 986 258 71 27 chr12 68219615 68219983 -75566472 + MER89 LTR ERV1 176 559 0 528 133 0 12 chr12 68220084 68220167 -75566288 - Tigger4(Zombi) DNA MER2_type -2649 82 1 256 16 0 97 chr12 68220850 68220912 -75565543 + (TTAAA)n Simple_repeat Simple_repeat 2 57 0 1836 207 87 14 chr12 68221259 68221684 -75564771 + L1M4c LINE L1 26 481 -5903 878 180 62 7 chr12 68221685 68221863 -75564592 - LTR54 LTR ERV1 0 510 316 1635 192 50 0 chr12 68221863 68222160 -75564295 + AluSx SINE Alu 1 312 0 878 180 62 7 chr12 68222160 68222183 -75564272 - LTR54 LTR ERV1 -194 316 296 460 231 234 26 chr12 68222186 68222488 -75563967 + LTR28 LTR ERV1 1 417 -603 836 130 10 146 chr12 68222642 68222834 -75563621 + AluJb SINE Alu 145 310 -2 360 43 0 0 chr12 68222953 68222999 -75563456 + (TG)n Simple_repeat Simple_repeat 1 46 0 1706 164 20 3 chr12 68223252 68223550 -75562905 + AluJo SINE Alu 6 308 -4 183 80 0 0 chr12 68223812 68223837 -75562618 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2083 246 93 44 chr12 68224236 68225083 -75561372 - L1MC5 LINE L1 -435 7526 6638 314 318 226 37 chr12 68225083 68225379 -75561076 - MLT1B LTR MaLR -14 581 230 2084 145 30 52 chr12 68225552 68226003 -75560452 - MER52A LTR ERV1 -1 1277 801 262 242 45 0 chr12 68226116 68226182 -75560273 - L1M4 LINE L1 -1559 4587 4519 * 1926 239 48 22 chr12 68226160 68226763 -75559692 - L1M4 LINE L1 -3139 3007 2389 6777 118 11 0 chr12 68226801 68227797 -75558658 + L1P LINE L1 1326 2332 -3814 3318 143 28 0 chr12 68227797 68228302 -75558153 + L1P LINE L1 1 519 -5627 2135 150 0 0 chr12 68228563 68228869 -75557586 + AluSx SINE Alu 1 306 -6 2115 119 7 7 chr12 68229599 68229901 -75556554 + AluSx SINE Alu 1 302 -10 246 188 87 0 chr12 68230424 68230493 -75555962 - Tigger5 DNA MER2_type -34 2289 2215 806 170 11 93 chr12 68230881 68231063 -75555392 + FRAM SINE Alu 1 166 -10 2061 115 3 11 chr12 68231586 68231923 -75554532 - AluSx SINE Alu 0 335 1 638 102 0 10 chr12 68232179 68232277 -75554178 - L1PB1 LINE L1 0 6151 6055 185 309 86 72 chr12 68232311 68232450 -75554005 - L2 LINE L2 -28 3244 3104 2357 111 0 0 chr12 68233386 68233692 -75552763 - AluSx SINE Alu -6 306 1 480 122 44 22 chr12 68235585 68235675 -75550780 + L1PA8 LINE L1 6079 6170 -2 184 277 107 27 chr12 68236001 68236113 -75550342 + L2 LINE L2 2932 3052 -220 858 130 7 43 chr12 68236712 68236850 -75549605 + FLAM_A SINE Alu 1 133 0 604 189 63 44 chr12 68337019 68337178 -75449277 - MLT1B LTR MaLR -214 176 15 994 232 139 18 chr12 68339108 68339567 -75446888 - MLT1G3 LTR MaLR -5 544 3 374 252 48 10 chr12 68339787 68339890 -75446565 + MIR SINE MIR 66 172 -90 269 51 0 0 chr12 68340737 68340776 -75445679 + MADE1 DNA Mariner 42 80 0 633 296 108 35 chr12 68340905 68341303 -75445152 + L2 LINE L2 2883 3309 -4 459 299 32 13 chr12 68342331 68342488 -75443967 + MIR SINE MIR 61 220 -42 890 240 48 121 chr12 68342498 68343119 -75443336 + MLT1G LTR MaLR 15 590 0 2465 117 60 5 chr12 68343421 68343824 -75442631 + MSTA LTR MaLR 1 425 -3 969 299 68 28 chr12 68344018 68344733 -75441722 - L2 LINE L2 0 3313 2586 275 226 65 57 chr12 68345019 68345143 -75441312 - MARNA DNA Mariner -69 517 393 * 370 262 34 47 chr12 68345050 68345199 -75441256 + MARNA DNA Mariner 102 248 -338 22 56 0 0 chr12 68345199 68345235 -75441220 + AT_rich Low_complexity Low_complexity 1 36 0 724 173 0 0 chr12 68345298 68345425 -75441030 - MIR SINE MIR 0 262 136 1226 120 5 42 chr12 68345432 68345649 -75440806 - L1PA10 LINE L1 -2 6166 5958 276 292 0 14 chr12 68345831 68345903 -75440552 + L2 LINE L2 3201 3271 -1 800 240 154 73 chr12 68346353 68346903 -75439552 - MLT1G1 LTR MaLR 0 595 1 551 263 85 27 chr12 68347250 68347474 -75438981 + MARNA DNA Mariner 343 579 -7 309 273 129 50 chr12 68348443 68348582 -75437873 + MIR3 SINE MIR 45 194 -14 342 204 36 15 chr12 68348627 68348764 -75437691 + (TA)n Simple_repeat Simple_repeat 1 140 0 197 267 22 0 chr12 68349785 68349830 -75436625 - MIR SINE MIR -102 106 61 1769 146 50 7 chr12 68349831 68350111 -75436344 - AluJb SINE Alu -20 292 1 244 277 70 40 chr12 68350251 68350580 -75435875 + L1ME LINE L1 5258 5596 -525 1849 158 11 55 chr12 68350904 68351266 -75435189 + MER7A DNA MER2_type 1 344 -2 192 77 0 0 chr12 68351267 68351293 -75435162 + (TG)n Simple_repeat Simple_repeat 2 27 0 183 130 56 0 chr12 68351320 68351374 -75435081 + (TA)n Simple_repeat Simple_repeat 2 58 0 3668 179 68 52 chr12 68351382 68352101 -75434354 + L1MCb LINE L1 233 939 -5625 2183 109 0 0 chr12 68352101 68352385 -75434070 + AluSg SINE Alu 10 293 -17 3668 179 68 52 chr12 68352385 68353238 -75433217 + L1MCb LINE L1 939 1835 -4729 3083 158 12 7 chr12 68353244 68353417 -75433038 - L1 LINE L1 -1222 4924 4753 1207 180 71 74 chr12 68353417 68353783 -75432672 - MLT1A1 LTR MaLR 0 365 1 3083 158 12 7 chr12 68353783 68354198 -75432257 - L1 LINE L1 -1393 4753 4333 4256 142 44 28 chr12 68354199 68355028 -75431427 + L1MA8 LINE L1 4937 5751 -540 217 0 0 57 chr12 68355028 68355063 -75431392 + (TA)n Simple_repeat Simple_repeat 1 33 0 4256 142 44 28 chr12 68355063 68355234 -75431221 + L1MA8 LINE L1 5751 5918 -373 2042 123 20 7 chr12 68355234 68355526 -75430929 + AluSx SINE Alu 1 296 -16 4256 142 44 28 chr12 68355526 68355840 -75430615 + L1MA8 LINE L1 5918 6275 -16 1801 147 152 7 chr12 68355821 68356243 -75430212 + L1MCb LINE L1 1893 2375 -4189 * 857 258 18 0 chr12 68356248 68356415 -75430040 + FAM SINE Alu 1 170 -5 16537 135 13 103 chr12 68356426 68359907 -75426548 + L1P LINE L1 12 3177 -2969 204 286 0 0 chr12 68360064 68360113 -75426342 + CT-rich Low_complexity Low_complexity 3 51 0 43215 34 27 4 chr12 68360258 68360580 -75425875 + L1PA3 LINE L1 3 316 -5839 2813 16 0 13 chr12 68360580 68360895 -75425560 + AluYa5 SINE Alu 1 311 0 43215 34 27 4 chr12 68360895 68366583 -75419872 + L1PA3 LINE L1 316 6155 0 204 97 0 0 chr12 68366641 68366672 -75419783 + (ATG)n Simple_repeat Simple_repeat 3 33 0 570 255 13 13 chr12 68366679 68366828 -75419627 - MIR SINE MIR -14 248 100 324 0 0 0 chr12 68367231 68367267 -75419188 + (CA)n Simple_repeat Simple_repeat 2 37 0 232 260 39 0 chr12 68367270 68367347 -75419108 + L1ME LINE L1 5835 5914 -207 22 0 0 0 chr12 68367408 68367430 -75419025 + AT_rich Low_complexity Low_complexity 1 22 0 2089 130 3 29 chr12 68367668 68367983 -75418472 - AluSx SINE Alu -5 307 1 195 219 0 0 chr12 68368055 68368096 -75418359 - MIR SINE MIR -156 106 66 925 272 75 75 chr12 68369421 68369885 -75416570 - LTR16B LTR ERVL 0 464 1 241 266 203 16 chr12 68369907 68370035 -75416420 - MIR SINE MIR 0 262 111 288 0 0 0 chr12 68370652 68370684 -75415771 + (GGA)n Simple_repeat Simple_repeat 2 33 0 274 220 0 0 chr12 68371368 68371418 -75415037 - L2 LINE L2 -12 3260 3211 662 252 110 32 chr12 68372014 68372232 -75414223 + MIR SINE MIR 27 261 -1 207 214 18 71 chr12 68372475 68372531 -75413924 - MIR3 SINE MIR -31 177 125 21 0 0 0 chr12 68372589 68372610 -75413845 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 68373216 68373236 -75413219 + (T)n Simple_repeat Simple_repeat 1 20 0 1177 204 201 10 chr12 68373655 68373944 -75412511 - MER2 DNA MER2_type 0 344 1 299 348 73 28 chr12 68374927 68375105 -75411350 + MIR SINE MIR 45 230 -32 951 267 143 20 chr12 68376504 68376946 -75409509 + L1ME4a LINE L1 5617 6112 -9 267 277 12 12 chr12 68377159 68377242 -75409213 + GA-rich Low_complexity Low_complexity 1 83 0 24 0 0 0 chr12 68377282 68377306 -75409149 + AT_rich Low_complexity Low_complexity 1 24 0 3829 136 23 19 chr12 68377306 68377946 -75408509 - L1MA7 LINE L1 -10 6281 5639 1106 222 45 45 chr12 68378208 68378586 -75407869 - Zaphod DNA AcHobo 0 4031 3654 605 152 49 65 chr12 68378605 68378868 -75407587 - Zaphod DNA AcHobo -3041 990 732 993 202 0 34 chr12 68378882 68379060 -75407395 + FAM SINE Alu 1 172 -3 5326 128 37 37 chr12 68379075 68380005 -75406450 - L1MA10 LINE L1 -13 6321 5392 1759 252 89 71 chr12 68380007 68380737 -75405718 - Zaphod DNA AcHobo -3280 751 9 224 175 197 14 chr12 68380905 68380979 -75405476 + MIR3 SINE MIR 70 157 -51 405 312 64 0 chr12 68381089 68381230 -75405225 + MIR SINE MIR 73 222 -40 1820 232 37 85 chr12 68381515 68381606 -75404849 - L1ME3A LINE L1 -8 6162 6068 1645 201 80 19 chr12 68381606 68381805 -75404650 - MSTD LTR MaLR 0 396 211 1466 175 73 11 chr12 68381805 68382079 -75404376 - AluJb SINE Alu -15 297 7 1645 201 80 19 chr12 68382079 68382252 -75404203 - MSTD LTR MaLR -185 211 1 1820 232 37 85 chr12 68382252 68382832 -75403623 - L1ME3A LINE L1 -102 6068 5523 958 117 15 7 chr12 68383131 68383268 -75403187 - THE1B LTR MaLR 0 364 227 456 363 16 0 chr12 68384044 68384234 -75402221 + MER117 DNA MER1_type 5 197 0 269 259 155 9 chr12 68384564 68384680 -75401775 - MIR SINE MIR -66 196 64 189 368 13 13 chr12 68386667 68386743 -75399712 - L3 LINE CR1 -1397 180 105 590 300 80 27 chr12 68387433 68388052 -75398403 - L1ME3A LINE L1 -1544 4602 3919 23 0 0 0 chr12 68388315 68388338 -75398117 + AT_rich Low_complexity Low_complexity 1 23 0 1107 282 72 26 chr12 68389700 68390118 -75396337 + LTR16A LTR ERVL 1 437 -13 333 266 107 45 chr12 68390303 68390480 -75395975 - MLT1K LTR MaLR -22 566 379 820 306 177 4 chr12 68390740 68391353 -75395102 - L2 LINE L2 -75 3238 2530 582 265 67 6 chr12 68391373 68391566 -75394889 - MLT1H LTR MaLR -321 228 34 614 277 40 18 chr12 68391573 68391797 -75394658 - L2 LINE L2 -838 2476 2248 181 247 101 22 chr12 68391990 68392079 -75394376 - L2 LINE L2 -666 2648 2553 1742 168 29 73 chr12 68393938 68394319 -75392136 - MLT1B LTR MaLR 0 390 27 10451 87 3 1 chr12 68394718 68396862 -75389593 + L1PA7 LINE L1 4000 6152 -2 611 161 32 81 chr12 68396863 68397049 -75389406 + L1MCa LINE L1 2236 2412 -4014 5235 245 18 21 chr12 68397092 68397719 -75388736 + L1MCa LINE L1 2408 3036 -3390 2159 123 0 0 chr12 68397719 68398066 -75388389 - AluSq SINE Alu 0 347 1 5235 245 18 21 chr12 68398066 68398918 -75387537 + L1MCa LINE L1 3036 3883 -2543 232 227 61 0 chr12 68398913 68398979 -75387476 - L1M4 LINE L1 -1812 4334 4265 * 618 247 43 11 chr12 68398997 68399183 -75387272 - AluSg/x SINE Alu -19 293 102 22 35 0 0 chr12 68399288 68399317 -75387138 + AT_rich Low_complexity Low_complexity 1 29 0 223 383 94 34 chr12 68400662 68400960 -75385495 - L2 LINE L2 -40 3232 2917 811 327 120 20 chr12 68401096 68401725 -75384730 - L2 LINE L2 -95 3218 2529 230 228 129 64 chr12 68402535 68402650 -75383805 - MIR3 SINE MIR -46 162 72 * 530 299 0 0 chr12 68402643 68402750 -75383705 + L2 LINE L2 3156 3262 -10 910 144 8 0 chr12 68403222 68403354 -75383101 + FLAM_C SINE Alu 1 133 -10 429 168 137 11 chr12 68403505 68403600 -75382855 + LTR50 LTR ERVL 1 107 -688 1562 166 10 52 chr12 68403602 68403909 -75382546 - L1MC1 LINE L1 0 6333 6040 22 70 0 0 chr12 68405013 68405056 -75381399 + AT_rich Low_complexity Low_complexity 1 43 0 28 48 0 0 chr12 68405095 68405137 -75381318 + AT_rich Low_complexity Low_complexity 1 42 0 912 287 37 8 chr12 68405209 68405453 -75381002 - MIR SINE MIR 0 262 12 371 306 76 52 chr12 68405948 68406278 -75380177 + L1MDa LINE L1 802 1139 -4980 317 308 19 31 chr12 68406427 68406685 -75379770 + L1MDa LINE L1 1336 1634 -856 357 297 61 68 chr12 68408051 68408199 -75378256 + L2 LINE L2 3126 3272 0 799 153 93 6 chr12 68408318 68408501 -75377954 - MER3 DNA MER1_type 0 209 11 243 292 22 45 chr12 68409184 68409273 -75377182 - L3 LINE CR1 -11 1566 1480 506 274 66 120 chr12 68409409 68409599 -75376856 + L2 LINE L2 2911 3075 -197 496 231 77 0 chr12 68409599 68409703 -75376752 + MER81 DNA DNA 1 112 -2 506 274 66 120 chr12 68409703 68409862 -75376593 + L2 LINE L2 3075 3241 -31 351 0 0 0 chr12 68409901 68409940 -75376515 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 191 271 51 0 chr12 68410187 68410246 -75376209 - L2 LINE L2 -2 3270 3209 417 230 20 86 chr12 68410270 68410422 -75376033 - MIR SINE MIR -119 143 2 255 341 15 30 chr12 68410677 68410812 -75375643 - MIR SINE MIR -56 152 20 327 130 0 0 chr12 68412022 68412076 -75374379 + (GA)n Simple_repeat Simple_repeat 2 55 0 402 58 0 0 chr12 68412862 68412914 -75373541 + L1 LINE L1 4515 4566 -1580 2160 120 130 18 chr12 68412914 68413298 -75373157 + MSTA LTR MaLR 2 428 0 9385 135 14 46 chr12 68413300 68413770 -75372685 + MSTA-int LTR MaLR 3 487 -1093 2260 105 3 0 chr12 68413770 68414066 -75372389 - AluY SINE Alu -14 297 1 9385 135 14 46 chr12 68414066 68415221 -75371234 + MSTA-int LTR MaLR 487 1576 -4 1344 150 103 22 chr12 68415225 68415498 -75370957 + MSTA LTR MaLR 1 295 -133 459 67 0 0 chr12 68415502 68415562 -75370893 - MSTA LTR MaLR 0 428 369 270 210 0 0 chr12 68415653 68415715 -75370740 + L1ME LINE L1 5721 5782 -382 705 213 0 0 chr12 68415716 68415838 -75370617 + FLAM_C SINE Alu 1 122 -11 2150 219 70 14 chr12 68416092 68416721 -75369734 - L1M4 LINE L1 -2118 4028 3365 26 30 0 0 chr12 68417148 68417181 -75369274 + AT_rich Low_complexity Low_complexity 1 33 0 2437 69 7 0 chr12 68417388 68417691 -75368764 - AluY SINE Alu -6 305 1 598 333 109 17 chr12 68417713 68418191 -75368264 + L1M4 LINE L1 2141 2662 -3484 234 370 8 42 chr12 68418636 68418755 -75367700 - L2 LINE L2 0 3272 3158 607 279 7 19 chr12 68418799 68418953 -75367502 - MER5B DNA MER1_type -20 158 7 273 194 32 16 chr12 68419299 68419361 -75367094 - AluS SINE Alu -245 63 1 180 0 0 0 chr12 68419361 68419381 -75367074 + (TA)n Simple_repeat Simple_repeat 2 21 0 2168 115 3 3 chr12 68419547 68419842 -75366613 + AluSc SINE Alu 1 295 -14 478 260 54 95 chr12 68421262 68421371 -75365084 + MIR SINE MIR 31 143 -119 1854 172 10 0 chr12 68421371 68421673 -75364782 + AluSx SINE Alu 1 305 -7 478 260 54 95 chr12 68421673 68421805 -75364650 + MIR SINE MIR 143 262 0 676 215 35 7 chr12 68421818 68421962 -75364493 - MLT1A2 LTR MaLR -11 363 216 474 290 107 5 chr12 68423380 68423579 -75362876 + MIR SINE MIR 18 235 -27 725 68 8 83 chr12 68424806 68424938 -75361517 - L1PA13 LINE L1 0 6163 6042 342 306 52 32 chr12 68425583 68425725 -75360730 - MIR SINE MIR -43 165 19 189 0 0 0 chr12 68425930 68425951 -75360504 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 360 239 51 51 chr12 68426894 68427011 -75359444 + L2 LINE L2 3156 3272 0 243 204 0 0 chr12 68428666 68428710 -75357745 - L1ME LINE L1 -580 5582 5539 303 203 0 0 chr12 68428758 68428822 -75357633 + GA-rich Low_complexity Low_complexity 3 66 0 379 307 126 29 chr12 68428828 68429066 -75357389 + HAL1 LINE L1 749 1009 -1498 1547 99 9 5 chr12 68429066 68429277 -75357178 - AluSg/x SINE Alu -10 302 91 606 152 101 0 chr12 68429292 68429391 -75357064 - AluJb SINE Alu -191 121 13 528 242 69 15 chr12 68429536 68429796 -75356659 + HAL1 LINE L1 1104 1377 -1130 257 294 41 7 chr12 68429834 68429980 -75356475 + HAL1 LINE L1 1482 1632 -875 1263 188 17 114 chr12 68430260 68430664 -75355791 + MLT1A1 LTR MaLR 1 365 0 644 213 21 0 chr12 68431026 68431167 -75355288 + Tigger6a DNA MER2_type 2 145 -938 * 1626 168 38 22 chr12 68431164 68431533 -75354922 + Tigger6a DNA MER2_type 378 752 -331 720 200 19 97 chr12 68431596 68431866 -75354589 - MER65B LTR ERV1 -8 523 234 1586 163 3 38 chr12 68431866 68432155 -75354300 + AluJb SINE Alu 1 279 -33 969 50 29 0 chr12 68432157 68432296 -75354159 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 720 200 19 97 chr12 68432296 68432328 -75354127 - MER65B LTR ERV1 -298 233 179 271 224 15 15 chr12 68432365 68432432 -75354023 - MER65C LTR ERV1 -394 67 1 2245 232 62 113 chr12 68432432 68434172 -75352283 + Charlie7 DNA MER1_type 957 2608 -4 441 271 114 0 chr12 68434177 68434317 -75352138 + MIR SINE MIR 18 173 -89 329 279 121 12 chr12 68434490 68434655 -75351800 - Charlie8 DNA MER1_type -2152 265 83 1559 155 8 0 chr12 68434666 68434917 -75351538 + L1PB4 LINE L1 5891 6143 -13 1541 136 30 109 chr12 68435359 68435727 -75350728 - MER7A DNA MER2_type -9 337 1 231 88 0 0 chr12 68436324 68436358 -75350097 + (TATG)n Simple_repeat Simple_repeat 4 37 0 279 241 0 0 chr12 68436360 68436443 -75350012 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 13935 128 9 56 chr12 68436443 68437126 -75349329 - Tigger1 DNA MER2_type 0 2418 1705 728 180 8 0 chr12 68437126 68437254 -75349201 + FLAM_C SINE Alu 2 130 -3 13935 128 9 56 chr12 68437254 68439106 -75347349 - Tigger1 DNA MER2_type -713 1705 1 218 217 0 0 chr12 68439107 68439153 -75347302 + (TA)n Simple_repeat Simple_repeat 2 47 0 302 301 165 8 chr12 68439492 68439625 -75346830 + L2 LINE L2 3118 3271 -1 617 146 0 0 chr12 68440728 68440831 -75345624 + L1PB3 LINE L1 6052 6154 0 343 291 99 40 chr12 68441114 68441265 -75345190 + MIR SINE MIR 10 169 -93 336 196 12 52 chr12 68441635 68441808 -75344647 + CT-rich Low_complexity Low_complexity 5 170 0 2090 133 16 10 chr12 68442046 68442355 -75344100 + AluSx SINE Alu 1 311 -1 579 197 183 14 chr12 68443381 68443523 -75342932 - MER5A DNA MER1_type -23 166 1 299 250 28 0 chr12 68446182 68446254 -75340201 - MIR SINE MIR -108 154 81 1107 159 22 0 chr12 68446658 68446840 -75339615 - AluSc SINE Alu -9 300 115 2207 104 0 0 chr12 68446846 68447133 -75339322 - AluY SINE Alu -24 287 1 772 232 235 20 chr12 68448994 68449300 -75337155 - L2 LINE L2 0 3313 2942 185 0 40 0 chr12 68453245 68453270 -75333185 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1634 81 0 4 chr12 68453293 68453539 -75332916 - L1P LINE L1 -772 5374 5130 2993 34 0 0 chr12 68453539 68453920 -75332535 + L1PA7 LINE L1 5788 6169 0 1846 176 3 3 chr12 68455089 68455385 -75331070 + AluJb SINE Alu 1 296 -16 182 286 19 86 chr12 68455436 68455541 -75330914 + L2 LINE L2 102 199 -3115 * 532 259 38 25 chr12 68455484 68455642 -75330813 + MIR SINE MIR 28 187 -75 321 226 69 29 chr12 68456538 68456640 -75329815 - L1ME4a LINE L1 -22 6099 5994 336 189 136 38 chr12 68456690 68456822 -75329633 - L1ME4a LINE L1 -360 5761 5617 380 233 158 5 chr12 68456824 68457018 -75329437 - L1ME4a LINE L1 -537 5584 5356 222 341 178 0 chr12 68457837 68457972 -75328483 - L2 LINE L2 -2598 716 558 263 335 16 72 chr12 68458050 68458244 -75328211 - L2 LINE L2 -2919 395 213 1814 155 13 7 chr12 68458529 68458838 -75327617 - AluJo SINE Alu -1 311 1 299 277 10 40 chr12 68458981 68459082 -75327373 + MER91A DNA MER1_type 14 111 -85 714 255 42 32 chr12 68459642 68459858 -75326597 - MIR SINE MIR -26 236 19 428 216 52 138 chr12 68459887 68460205 -75326250 + L1ME LINE L1 5338 5623 -498 23 54 0 0 chr12 68460683 68460720 -75325735 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr12 68461711 68461742 -75324713 + AT_rich Low_complexity Low_complexity 1 31 0 1674 168 4 14 chr12 68462793 68463119 -75323336 - AluJb SINE Alu 0 328 6 1792 90 0 35 chr12 68466152 68466408 -75320047 + AluY SINE Alu 51 297 -14 972 156 45 34 chr12 68466685 68466864 -75319591 - MER3 DNA MER1_type 0 209 29 231 263 35 26 chr12 68466908 68467022 -75319433 - HAL1b LINE L1 -441 907 793 329 308 31 39 chr12 68467051 68467181 -75319274 + L2 LINE L2 3180 3308 -5 21 36 0 0 chr12 68469463 68469491 -75316964 + AT_rich Low_complexity Low_complexity 1 28 0 2177 119 3 0 chr12 68469494 68469789 -75316666 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr12 68471065 68471087 -75315368 + AT_rich Low_complexity Low_complexity 1 22 0 1300 166 16 4 chr12 68471507 68471754 -75314701 + L1MB3 LINE L1 5932 6181 -2 555 205 0 9 chr12 68471777 68471889 -75314566 + MLT1A2 LTR MaLR 216 326 -48 346 229 48 78 chr12 68473708 68473874 -75312581 + L2 LINE L2 3097 3257 -56 209 294 24 35 chr12 68473980 68474065 -75312390 + L2 LINE L2 571 654 -2660 320 315 100 20 chr12 68475894 68476285 -75310170 - L1MEd LINE L1 -3584 2545 2124 349 368 142 5 chr12 68476623 68476835 -75309620 - HAL1 LINE L1 -952 1538 1298 267 293 35 34 chr12 68476859 68477008 -75309447 - L1MEd LINE L1 -1274 1216 979 441 242 32 25 chr12 68477104 68477261 -75309194 - MLT1L LTR MaLR 0 615 458 446 291 135 33 chr12 68477294 68477538 -75308917 - MLT1L LTR MaLR -222 393 125 382 299 140 36 chr12 68478216 68478437 -75308018 - MIR SINE MIR -15 247 4 1835 184 95 25 chr12 68478695 68479169 -75307286 - Charlie4a DNA MER1_type 0 508 2 375 278 37 56 chr12 68479790 68479952 -75306503 + L3b LINE CR1 1108 1266 -317 192 200 36 18 chr12 68480053 68480108 -75306347 + L3b LINE CR1 1315 1370 -213 222 327 109 0 chr12 68480309 68480410 -75306045 + MIR SINE MIR 27 138 -124 270 269 15 0 chr12 68481251 68481318 -75305137 + MARNA DNA Mariner 342 409 -177 24 0 0 0 chr12 68481832 68481856 -75304599 + AT_rich Low_complexity Low_complexity 1 24 0 1531 156 26 0 chr12 68482049 68482318 -75304137 - L1M3 LINE L1 -452 5731 5456 260 91 23 0 chr12 68485270 68485314 -75301141 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 507 277 166 71 chr12 68485865 68486287 -75300168 + L2 LINE L2 2804 3265 -48 188 312 129 11 chr12 68486802 68486895 -75299560 + L2 LINE L2 3169 3272 0 9846 247 50 19 chr12 68487706 68489205 -75297250 + L1MA8 LINE L1 1494 2946 -4221 2144 115 0 16 chr12 68489205 68489510 -75296945 + AluSx SINE Alu 1 300 -12 9846 247 50 19 chr12 68489510 68492003 -75294452 + L1MA8 LINE L1 2946 5286 -1881 2128 118 3 10 chr12 68492003 68492309 -75294146 + AluSq SINE Alu 3 306 -7 9846 247 50 19 chr12 68492309 68492670 -75293785 + L1MA8 LINE L1 5286 5635 -1532 1064 93 110 6 chr12 68492670 68492818 -75293637 + L1MA3 LINE L1 6105 6285 -20 399 68 0 0 chr12 68492818 68492877 -75293578 + (TA)n Simple_repeat Simple_repeat 1 59 0 1064 93 110 6 chr12 68492877 68492901 -75293554 + L1MA3 LINE L1 6285 6305 0 3866 199 4 1 chr12 68492910 68493658 -75292797 - L1P LINE L1 -3531 2615 1866 3058 139 30 1 chr12 68493642 68494426 -75292029 + L1PA14 LINE L1 4993 5798 -363 * 1988 123 28 0 chr12 68494572 68494889 -75291566 + L1PA14 LINE L1 5827 6152 -9 30 27 0 0 chr12 68494889 68494926 -75291529 + AT_rich Low_complexity Low_complexity 1 37 0 1717 179 54 5 chr12 68494927 68495296 -75291159 + L1MA8 LINE L1 5623 6009 -1158 315 310 58 45 chr12 68495386 68495541 -75290914 + L1M2 LINE L1 796 952 -5897 1499 171 47 19 chr12 68496710 68497073 -75289382 + L1MA8 LINE L1 6001 6373 -794 1305 138 0 0 chr12 68497073 68497254 -75289201 + AluSp SINE Alu 105 285 -28 4424 113 57 11 chr12 68497260 68498011 -75288444 + L1MA8 LINE L1 6523 7308 -4 1449 147 24 133 chr12 68498586 68498961 -75287494 + MER7A DNA MER2_type 10 341 -5 711 164 70 6 chr12 68500811 68500982 -75285473 - MER53 DNA DNA -4 185 4 363 245 11 0 chr12 68501763 68501857 -75284598 + MIR SINE MIR 168 262 0 869 273 70 70 chr12 68502329 68502787 -75283668 + L2 LINE L2 2854 3311 -2 2235 123 19 24 chr12 68503271 68503646 -75282809 + THE1C LTR MaLR 1 373 -2 572 39 26 0 chr12 68503708 68503785 -75282670 + MADE1 DNA Mariner 2 80 0 282 245 147 0 chr12 68505082 68505184 -75281271 + MIR SINE MIR 73 189 -73 25 31 0 0 chr12 68505215 68505247 -75281208 + AT_rich Low_complexity Low_complexity 1 32 0 2401 87 0 0 chr12 68505772 68506083 -75280372 + AluY SINE Alu 1 311 0 1171 245 59 30 chr12 68506085 68506457 -75279998 + L1MC4 LINE L1 6755 7137 -905 2037 99 11 7 chr12 68506470 68506754 -75279701 + AluSx SINE Alu 1 285 -27 1662 186 4 0 chr12 68507134 68507414 -75279041 + MER7A DNA MER2_type 68 346 0 1419 249 76 49 chr12 68507414 68507925 -75278530 - L2 LINE L2 -779 2535 2011 810 288 64 76 chr12 68508151 68508638 -75277817 - L2 LINE L2 -1 3312 2832 7315 131 44 4 chr12 68510333 68511452 -75275003 + MER57-int LTR ERV1 5837 7000 -537 205 180 0 60 chr12 68511453 68511503 -75274952 + CT-rich Low_complexity Low_complexity 4 50 0 3796 135 31 3 chr12 68511703 68512275 -75274180 - MER57B-int LTR ERV1 -6949 588 1 3004 128 12 5 chr12 68512275 68512706 -75273749 - MER57B LTR ERV1 0 434 1 355 123 55 41 chr12 68512708 68512781 -75273674 - MER4A LTR ERV1 -589 75 2 354 130 0 58 chr12 68512783 68512852 -75273603 - MER4A-int LTR ERV1 0 6598 6534 212 173 19 39 chr12 68562994 68563046 -75223409 + GA-rich Low_complexity Low_complexity 2 52 0 623 241 101 31 chr12 68566192 68566420 -75220035 - MIR SINE MIR 0 262 19 2155 105 13 19 chr12 68566428 68566742 -75219713 - AluSx SINE Alu 0 312 1 22 35 0 0 chr12 68567414 68567443 -75219012 + AT_rich Low_complexity Low_complexity 1 29 0 212 328 0 0 chr12 68567738 68567796 -75218659 - MIR SINE MIR -16 246 189 * 942 259 35 90 chr12 68567783 68568185 -75218270 - L2 LINE L2 0 3313 2934 330 379 43 0 chr12 68569413 68569553 -75216902 - L2 LINE L2 0 3313 3168 194 392 0 0 chr12 68571126 68571205 -75215250 + L2 LINE L2 3186 3264 -8 252 215 161 11 chr12 68571598 68571691 -75214764 + MER103 DNA DNA 2 108 -58 403 192 40 93 chr12 68571705 68571856 -75214599 - MER104 DNA Tc2 -37 143 1 211 273 195 0 chr12 68571956 68572033 -75214422 - MIR3 SINE MIR -49 159 68 547 260 8 8 chr12 68572536 68572659 -75213796 - L2 LINE L2 0 3313 3191 210 71 0 0 chr12 68572831 68572859 -75213596 + (TATAA)n Simple_repeat Simple_repeat 5 32 0 2061 115 10 13 chr12 68573425 68573730 -75212725 - AluSx SINE Alu -8 304 1 23 54 0 0 chr12 68573779 68573816 -75212639 + AT_rich Low_complexity Low_complexity 1 37 0 269 154 211 0 chr12 68576295 68576347 -75210108 - L2 LINE L2 -4 3309 3247 482 296 136 6 chr12 68576908 68577070 -75209385 - MIR3 SINE MIR -5 203 21 24 32 0 0 chr12 68577182 68577213 -75209242 + AT_rich Low_complexity Low_complexity 1 31 0 773 239 165 18 chr12 68578130 68578348 -75208107 - MIR SINE MIR -11 251 2 191 368 24 8 chr12 68578701 68578826 -75207629 + L2 LINE L2 2476 2602 -712 316 320 100 31 chr12 68579116 68579455 -75207000 + L2 LINE L2 2690 3064 -208 283 214 0 36 chr12 68579625 68579681 -75206774 + L2 LINE L2 3184 3237 -35 21 0 0 0 chr12 68579810 68579831 -75206624 + AT_rich Low_complexity Low_complexity 1 21 0 480 317 104 17 chr12 68580876 68581106 -75205349 - MIR SINE MIR -11 251 2 21 0 0 0 chr12 68581597 68581618 -75204837 + AT_rich Low_complexity Low_complexity 1 21 0 648 255 193 0 chr12 68582988 68583180 -75203275 + MIR SINE MIR 34 262 0 837 211 19 102 chr12 68583375 68583641 -75202814 - MIR SINE MIR -10 252 9 1873 137 43 0 chr12 68583763 68584062 -75202393 + AluSx SINE Alu 1 312 0 438 125 0 0 chr12 68584542 68584606 -75201849 - AluS SINE Alu -254 64 1 29 28 0 0 chr12 68585604 68585640 -75200815 + AT_rich Low_complexity Low_complexity 1 36 0 183 296 74 49 chr12 68586569 68586650 -75199805 - L2 LINE L2 -18 3254 3172 3392 155 50 76 chr12 68586875 68587700 -75198755 - Charlie1 DNA MER1_type -6 2755 1953 281 190 25 99 chr12 68587959 68588080 -75198375 - MIR SINE MIR -2 260 149 1384 271 3 41 chr12 68588082 68588470 -75197985 + MLT1I LTR MaLR 2 374 -35 255 314 86 0 chr12 68588476 68588546 -75197909 - MIR SINE MIR -135 127 52 267 291 20 47 chr12 68589257 68589405 -75197050 + HAL1b LINE L1 747 890 -458 562 271 79 31 chr12 68589424 68589653 -75196802 + MLT1J LTR MaLR 8 247 -264 325 353 104 20 chr12 68589865 68590066 -75196389 + HAL1 LINE L1 2221 2438 -69 24 0 0 0 chr12 68590424 68590448 -75196007 + AT_rich Low_complexity Low_complexity 1 24 0 2011 147 0 0 chr12 68590815 68591115 -75195340 + AluJb SINE Alu 1 300 -12 217 364 186 4 chr12 68591121 68591401 -75195054 + L2 LINE L2 2422 2752 -562 344 291 13 0 chr12 68591540 68591619 -75194836 + L2 LINE L2 3189 3268 -4 2982 51 3 0 chr12 68591728 68592098 -75194357 - L1PA10 LINE L1 -4 6164 5794 330 220 36 146 chr12 68592485 68592689 -75193766 + MIR SINE MIR 10 192 -70 1270 196 21 35 chr12 68593989 68594294 -75192161 + AluJb SINE Alu 1 301 0 486 307 101 41 chr12 68595331 68595910 -75190545 - L2 LINE L2 -56 3216 2596 281 352 80 34 chr12 68595914 68596090 -75190365 - L2 LINE L2 -825 2489 2306 2266 87 7 0 chr12 68597859 68598157 -75188298 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr12 68598698 68598728 -75187727 + AT_rich Low_complexity Low_complexity 1 30 0 207 186 0 0 chr12 68598916 68598959 -75187496 + (TA)n Simple_repeat Simple_repeat 1 43 0 893 251 99 0 chr12 68600951 68601174 -75185281 + MIR SINE MIR 9 253 -9 1724 128 8 4 chr12 68601229 68601480 -75184975 - AluSx SINE Alu -16 296 45 207 387 38 0 chr12 68601534 68601640 -75184815 + L2 LINE L2 2866 2975 -338 1006 205 64 20 chr12 68602098 68602347 -75184108 + L1ME2 LINE L1 5799 6058 -106 614 85 11 0 chr12 68602569 68602663 -75183792 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 248 292 27 15 chr12 68603380 68603485 -75182970 + MLT1G LTR MaLR 474 574 -16 440 259 30 60 chr12 68603716 68603882 -75182573 - MLT1J2 LTR MaLR -13 437 277 1758 112 29 89 chr12 68604220 68604533 -75181922 + AluSx SINE Alu 3 296 -16 238 324 36 107 chr12 68604559 68604840 -75181615 - L2 LINE L2 -86 3186 2926 2120 58 0 4 chr12 68604975 68605252 -75181203 - L1PA7 LINE L1 -1 6153 5878 2310 40 0 0 chr12 68605425 68605699 -75180756 + AluY SINE Alu 27 300 -11 416 263 121 75 chr12 68605851 68606081 -75180374 + L1M4 LINE L1 2712 2967 -3179 1651 178 23 7 chr12 68606081 68606384 -75180071 + AluJo SINE Alu 1 308 -4 416 263 121 75 chr12 68606384 68606525 -75179930 + L1M4 LINE L1 2967 3100 -3046 2180 61 34 20 chr12 68606673 68606968 -75179487 + AluY SINE Alu 1 299 -12 341 265 137 10 chr12 68607407 68607509 -75178946 + L2 LINE L2 3199 3313 0 25 0 0 0 chr12 68607576 68607601 -75178854 + AT_rich Low_complexity Low_complexity 1 25 0 259 302 93 23 chr12 68609687 68609859 -75176596 + L1MC5 LINE L1 7743 7926 -35 225 0 0 0 chr12 68610160 68610185 -75176270 + (CA)n Simple_repeat Simple_repeat 2 26 0 2276 94 0 13 chr12 68610405 68610713 -75175742 - AluSc SINE Alu -5 304 1 21 71 0 0 chr12 68611441 68611483 -75174972 + AT_rich Low_complexity Low_complexity 1 42 0 192 152 0 0 chr12 68613819 68613852 -75172603 + (TG)n Simple_repeat Simple_repeat 2 34 0 205 296 265 0 chr12 68614134 68614266 -75172189 + L2 LINE L2 3102 3268 -4 268 350 77 8 chr12 68614870 68614987 -75171468 - MER5A DNA MER1_type -21 168 44 338 339 133 0 chr12 68615338 68615518 -75170937 + MER115 DNA AcHobo 169 372 -321 329 184 13 53 chr12 68616212 68616288 -75170167 + MER115 DNA AcHobo 620 692 -1 338 203 0 14 chr12 68616289 68616358 -75170097 - MER112 DNA MER1_type -192 68 1 234 318 24 12 chr12 68617314 68617399 -75169056 - L2 LINE L2 -2 3311 3226 1101 287 137 29 chr12 68617522 68617904 -75168551 + MLT1J LTR MaLR 1 441 -70 1999 137 40 0 chr12 68617904 68618204 -75168251 - AluSx SINE Alu 0 312 1 1101 287 137 29 chr12 68618204 68618274 -75168181 + MLT1J LTR MaLR 441 502 -9 22 35 0 0 chr12 68618408 68618437 -75168018 + AT_rich Low_complexity Low_complexity 1 29 0 729 273 131 55 chr12 68619347 68619713 -75166742 + MLT1L LTR MaLR 2 395 -220 393 311 100 21 chr12 68620541 68620731 -75165724 + MIR SINE MIR 57 261 -1 219 282 243 29 chr12 68621095 68621198 -75165257 + MIR SINE MIR 22 146 -62 2174 161 29 0 chr12 68621640 68622019 -75164436 + MLT1B LTR MaLR 1 390 0 345 322 159 33 chr12 68622963 68623177 -75163278 - L2 LINE L2 -422 2892 2652 1992 133 5 49 chr12 68623181 68623550 -75162905 + L1MC3 LINE L1 6695 7047 -738 1434 157 4 17 chr12 68623550 68623786 -75162669 + AluJo SINE Alu 64 296 -16 318 118 40 26 chr12 68623787 68623863 -75162592 + L1MC3 LINE L1 7023 7099 -686 250 233 12 47 chr12 68623863 68623949 -75162506 + MLT1F1 LTR MaLR 35 117 -450 2470 152 12 0 chr12 68623954 68624361 -75162094 + L1MC3 LINE L1 7187 7598 -187 903 122 122 0 chr12 68624361 68624541 -75161914 + L1MC2 LINE L1 6143 6344 0 612 259 24 69 chr12 68624572 68624819 -75161636 - L2 LINE L2 -703 2611 2376 491 108 0 0 chr12 68625353 68625436 -75161019 + L1PB1 LINE L1 6065 6147 -4 213 171 0 0 chr12 68625911 68625946 -75160509 - MIR SINE MIR -10 252 218 12881 42 1 1 chr12 68627267 68628873 -75157582 + L1PA4 LINE L1 1235 2841 -3305 * 22165 30 0 0 chr12 68628872 68631548 -75154907 - L1PA2 LINE L1 -1436 4710 2036 7751 20 1 0 chr12 68631548 68632998 -75153457 + L1PA2 LINE L1 4704 6154 -1 * 20919 37 0 3 chr12 68632996 68636327 -75150128 + L1PA4 LINE L1 2827 6155 0 377 292 51 0 chr12 68636410 68636547 -75149908 - MER103 DNA DNA -2 164 21 205 208 0 38 chr12 68636713 68636766 -75149689 + L2 LINE L2 2329 2379 -935 188 324 83 9 chr12 68636935 68637043 -75149412 + MER5A DNA MER1_type 26 141 -48 256 274 48 40 chr12 68637085 68637209 -75149246 - L3 LINE CR1 -344 1233 1109 187 301 12 60 chr12 68637356 68637439 -75149016 - L3 LINE CR1 -448 1129 1051 500 252 50 22 chr12 68637830 68637969 -75148486 - MIR SINE MIR -69 193 51 323 328 2 48 chr12 68638129 68638288 -75148167 + MIR SINE MIR 2 149 -59 869 293 130 21 chr12 68638874 68639637 -75146818 - L1ME4a LINE L1 -3 6187 5339 320 247 56 104 chr12 68640074 68640202 -75146253 - L1ME4a LINE L1 -2309 3906 3794 3261 102 65 40 chr12 68640202 68640807 -75145648 - L1MA3 LINE L1 0 6305 5686 320 247 56 104 chr12 68640807 68640929 -75145526 - L1ME4a LINE L1 -2421 3794 3668 261 294 45 37 chr12 68641001 68641270 -75145185 - L1ME4a LINE L1 -2682 3533 3263 497 288 125 38 chr12 68641311 68641942 -75144513 - L1ME4a LINE L1 -4925 1471 786 1581 214 91 8 chr12 68642123 68642507 -75143948 - MER63 DNA MER1_type 0 1060 645 1162 161 23 32 chr12 68642529 68642746 -75143709 + MER20 DNA MER1_type 1 215 -4 2101 133 3 10 chr12 68642806 68643115 -75143340 - AluSx SINE Alu -5 307 1 842 226 104 0 chr12 68643490 68643711 -75142744 - MER63 DNA MER1_type -132 928 685 21 0 0 0 chr12 68644133 68644154 -75142301 + AT_rich Low_complexity Low_complexity 1 21 0 186 321 36 12 chr12 68644350 68644434 -75142021 - MIR SINE MIR -97 165 80 1202 131 11 0 chr12 68644450 68644625 -75141830 - AluSc SINE Alu -3 306 130 195 69 0 0 chr12 68644625 68644654 -75141801 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2400 59 0 0 chr12 68644657 68644946 -75141509 - AluY SINE Alu -22 289 1 221 259 196 9 chr12 68646704 68646816 -75139639 - MIR SINE MIR -16 246 114 203 152 0 0 chr12 68647359 68647392 -75139063 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 68647434 68647455 -75139000 + AT_rich Low_complexity Low_complexity 1 21 0 667 181 219 7 chr12 68647526 68647681 -75138774 + MIR SINE MIR 75 262 0 264 343 36 102 chr12 68648012 68648286 -75138169 - L2 LINE L2 -25 3247 2992 26 30 0 0 chr12 68648696 68648729 -75137726 + AT_rich Low_complexity Low_complexity 1 33 0 1456 50 0 0 chr12 68649259 68649439 -75137016 - L1PA5 LINE L1 0 6154 5975 186 43 0 0 chr12 68649592 68649615 -75136840 + (CA)n Simple_repeat Simple_repeat 1 23 0 232 111 67 0 chr12 68649702 68649747 -75136708 - Charlie2 DNA MER1_type -1 2861 2814 1356 195 16 206 chr12 68649784 68650695 -75135760 + LTR41 LTR ERVL 22 759 -14 513 252 73 0 chr12 68650803 68650954 -75135501 - Charlie2a DNA MER1_type -1200 1662 1501 202 240 20 0 chr12 68651046 68651096 -75135359 + (CAGA)n Simple_repeat Simple_repeat 3 53 0 812 199 66 15 chr12 68651191 68651387 -75135068 - Charlie2a DNA MER1_type -2552 310 105 201 211 0 35 chr12 68651460 68651517 -75134938 + GA-rich Low_complexity Low_complexity 3 57 0 2213 108 7 0 chr12 68652245 68652540 -75133915 - AluSx SINE Alu -15 297 1 442 289 84 29 chr12 68656059 68656298 -75130157 - L2 LINE L2 -1043 2271 2020 243 88 0 0 chr12 68656298 68656332 -75130123 + (ATG)n Simple_repeat Simple_repeat 3 36 0 549 297 55 6 chr12 68656344 68656526 -75129929 - MIR SINE MIR -13 249 59 463 317 43 12 chr12 68656516 68656677 -75129778 - L2 LINE L2 -1293 2021 1856 * 1001 291 83 8 chr12 68656699 68657073 -75129382 + L2 LINE L2 2534 2935 -379 272 302 28 28 chr12 68657079 68657185 -75129270 + L2 LINE L2 3164 3269 -3 2074 113 0 0 chr12 68657398 68657680 -75128775 + AluSq SINE Alu 22 303 -10 189 375 0 0 chr12 68657956 68658004 -75128451 - MIR SINE MIR -76 132 85 338 244 273 48 chr12 68658396 68658605 -75127850 + MIR SINE MIR 7 262 0 2195 142 58 3 chr12 68658834 68659214 -75127241 + L1PA15 LINE L1 5765 6165 0 2191 113 7 0 chr12 68659249 68659550 -75126905 - AluSx SINE Alu -9 303 1 318 301 61 16 chr12 68660427 68660439 -75126016 - MIR3 SINE MIR -1 207 197 2249 93 0 20 chr12 68660439 68660740 -75125715 - AluSc SINE Alu -14 295 1 318 301 61 16 chr12 68660740 68660853 -75125602 - MIR3 SINE MIR -11 197 74 1641 162 45 39 chr12 68661407 68661715 -75124740 + AluJo SINE Alu 3 312 0 1964 145 3 16 chr12 68661787 68662098 -75124357 - AluJo SINE Alu -5 307 1 27 29 0 0 chr12 68662366 68662400 -75124055 + AT_rich Low_complexity Low_complexity 1 34 0 1704 170 53 0 chr12 68662997 68663280 -75123175 - AluJb SINE Alu -14 298 1 214 262 168 63 chr12 68663790 68663981 -75122474 - L2 LINE L2 -427 2887 2677 283 312 160 21 chr12 68664193 68664430 -75122025 + L2 LINE L2 2230 2499 -815 1944 157 0 7 chr12 68665100 68665399 -75121056 + AluJb SINE Alu 1 297 -15 182 280 20 0 chr12 68665954 68666004 -75120451 - L3 LINE CR1 -6 1571 1521 2396 91 0 0 chr12 68666500 68666798 -75119657 - AluSq SINE Alu -15 298 1 1444 187 4 8 chr12 68667636 68667887 -75118568 - AluJb SINE Alu -62 250 1 186 143 0 0 chr12 68669921 68669956 -75116499 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 195 125 0 0 chr12 68669996 68670036 -75116419 + (GGGAGA)n Simple_repeat Simple_repeat 6 45 0 27 62 0 0 chr12 68670223 68670271 -75116184 + GC_rich Low_complexity Low_complexity 1 48 0 410 189 9 0 chr12 68670276 68670387 -75116068 + CT-rich Low_complexity Low_complexity 2 113 0 505 247 84 13 chr12 68672092 68672246 -75114209 - MIR SINE MIR -3 259 95 589 232 135 11 chr12 68672751 68672936 -75113519 + MER63A DNA MER1_type 1 208 -2 259 349 72 20 chr12 68674560 68674712 -75111743 + MIR SINE MIR 13 172 -90 32 0 0 0 chr12 68675019 68675051 -75111404 + AT_rich Low_complexity Low_complexity 1 32 0 237 240 0 20 chr12 68675197 68675247 -75111208 - L2 LINE L2 0 3272 3224 1060 258 112 57 chr12 68675342 68675855 -75110600 - L2 LINE L2 -275 3038 2473 1343 196 47 24 chr12 68675988 68676460 -75109995 + AluJb SINE Alu 1 312 0 210 71 0 0 chr12 68676460 68676488 -75109967 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 191 340 75 19 chr12 68676539 68676645 -75109810 - L2 LINE L2 -636 2678 2567 863 181 16 21 chr12 68676682 68676870 -75109585 - MER53 DNA DNA -2 187 1 435 19 0 0 chr12 68677315 68677367 -75109088 + (CA)n Simple_repeat Simple_repeat 1 52 0 185 81 0 54 chr12 68677897 68677934 -75108521 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2019 138 13 10 chr12 68677937 68678248 -75108207 - AluJb SINE Alu 0 312 1 380 286 97 23 chr12 68679190 68679365 -75107090 - MER5A DNA MER1_type 0 189 2 1025 198 48 76 chr12 68681018 68681230 -75105225 - L1 LINE L1 -2099 4047 3831 2214 109 36 7 chr12 68681230 68681533 -75104922 - AluSx SINE Alu 0 312 1 1025 198 48 76 chr12 68681533 68681764 -75104691 - L1 LINE L1 -2315 3831 3592 389 268 191 18 chr12 68681948 68682116 -75104339 - MIR SINE MIR -53 209 13 24 32 0 0 chr12 68682703 68682734 -75103721 + AT_rich Low_complexity Low_complexity 1 31 0 888 145 0 81 chr12 68682734 68682920 -75103535 - MER50 LTR ERV1 -130 604 434 827 126 11 182 chr12 68682915 68682971 -75103484 - MER50 LTR ERV1 -505 229 165 * 2315 116 3 3 chr12 68682971 68683282 -75103173 - AluSx SINE Alu -1 311 1 827 126 11 182 chr12 68683282 68683494 -75102961 - MER50 LTR ERV1 -569 165 7 906 268 187 3 chr12 68683499 68683846 -75102609 + L2 LINE L2 1943 2353 -961 491 116 0 47 chr12 68683852 68683938 -75102517 - AluJ/FRAM SINE Alu -7 305 224 239 162 88 29 chr12 68684142 68684210 -75102245 + HsTC2 DNA Tc2 1825 1896 -2 1479 171 66 31 chr12 68684216 68684502 -75101953 + AluJo SINE Alu 1 296 -16 223 70 23 23 chr12 68684503 68684546 -75101909 + (TA)n Simple_repeat Simple_repeat 1 43 0 466 300 143 20 chr12 68684565 68685062 -75101393 - L1ME4a LINE L1 -262 5859 5302 2329 96 0 0 chr12 68685099 68685400 -75101055 + AluY SINE Alu 1 301 -10 2305 127 3 0 chr12 68685435 68685805 -75100650 + L1P LINE L1 4859 5229 -917 2564 53 0 0 chr12 68686249 68686551 -75099904 + AluY SINE Alu 1 302 -9 1765 167 3 10 chr12 68687665 68687980 -75098475 + AluJb SINE Alu 1 312 0 4192 166 32 29 chr12 68688131 68689703 -75096752 + L1MB8 LINE L1 4598 6169 -9 453 238 7 34 chr12 68689763 68689910 -75096545 + L1MEd LINE L1 975 1117 -5002 2018 145 0 16 chr12 68690138 68690442 -75096013 - AluJo SINE Alu -13 299 1 4389 122 15 15 chr12 68690924 68691288 -75095167 + Tigger1 DNA MER2_type 40 406 -2012 2105 119 7 0 chr12 68691288 68691582 -75094873 + AluSx SINE Alu 1 296 -16 4389 122 15 15 chr12 68691582 68691929 -75094526 + Tigger1 DNA MER2_type 405 751 -1667 2265 118 0 9 chr12 68691948 68692263 -75094192 + AluSx SINE Alu 1 312 0 3037 146 9 0 chr12 68692287 68692815 -75093640 + L1 LINE L1 3510 4042 -2104 328 230 140 0 chr12 68692832 68692932 -75093523 + MER63 DNA MER1_type 19 758 -304 263 275 0 44 chr12 68692933 68693024 -75093431 + MER63 DNA MER1_type 974 1060 0 1787 149 17 7 chr12 68693409 68693697 -75092758 - AluJo SINE Alu -7 305 15 1778 236 59 2 chr12 68693798 68694286 -75092169 + L1MEc LINE L1 35 550 -5846 * 2613 213 76 27 chr12 68694279 68695654 -75090801 + L1MEc LINE L1 1663 3074 -3141 685 285 210 28 chr12 68695739 68696135 -75090320 - L2 LINE L2 -5 3308 2841 445 153 45 54 chr12 68696273 68696384 -75090071 + Charlie5 DNA MER1_type 15 124 -2488 * 614 148 39 0 chr12 68696379 68696507 -75089948 + Charlie5 DNA MER1_type 2256 2388 -224 276 100 0 0 chr12 68696949 68696989 -75089466 + (A)n Simple_repeat Simple_repeat 1 40 0 1048 182 14 26 chr12 68697419 68697720 -75088735 - MER2 DNA MER2_type 0 345 1 393 289 123 28 chr12 68697941 68698152 -75088303 + L2 LINE L2 2173 2403 -911 1320 148 19 14 chr12 68698413 68698623 -75087832 - AluSg/x SINE Alu -11 301 91 1384 186 28 28 chr12 68698628 68698919 -75087536 - AluJo SINE Alu -19 293 3 314 318 69 65 chr12 68699809 68700054 -75086401 + L2 LINE L2 3010 3255 -17 24 53 0 0 chr12 68700501 68700539 -75085916 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr12 68700882 68700909 -75085546 + AT_rich Low_complexity Low_complexity 1 27 0 270 193 0 0 chr12 68701780 68701837 -75084618 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 2465 56 0 29 chr12 68703395 68703701 -75082754 + AluY SINE Alu 1 297 -14 1938 146 0 10 chr12 68703880 68704168 -75082287 - AluJb SINE Alu -27 285 1 188 122 24 0 chr12 68704531 68704572 -75081883 + (TG)n Simple_repeat Simple_repeat 1 42 0 1114 308 138 59 chr12 68705509 68706706 -75079749 - L2 LINE L2 0 3272 1939 894 112 0 42 chr12 68706794 68706937 -75079518 - L1PA10 LINE L1 -10 6158 6022 25 75 0 0 chr12 68707380 68707433 -75079022 + AT_rich Low_complexity Low_complexity 1 53 0 212 355 35 77 chr12 68708004 68708173 -75078282 + MER5B DNA MER1_type 10 171 -7 23 0 0 0 chr12 68709140 68709163 -75077292 + AT_rich Low_complexity Low_complexity 1 23 0 1727 153 35 7 chr12 68709261 68709549 -75076906 - AluJo SINE Alu -5 307 12 31 96 0 0 chr12 68709627 68709721 -75076734 + AT_rich Low_complexity Low_complexity 1 94 0 281 221 105 0 chr12 68710445 68710540 -75075915 - L1ME4a LINE L1 -27 6094 5990 1735 135 4 25 chr12 68710573 68710847 -75075608 - AluSx SINE Alu -44 268 1 3001 205 87 20 chr12 68710893 68711741 -75074714 + Charlie1 DNA MER1_type 1759 2663 -98 23 33 0 0 chr12 68711893 68711923 -75074532 + AT_rich Low_complexity Low_complexity 1 30 0 374 273 53 23 chr12 68711925 68712144 -75074311 - L1MC4a LINE L1 -316 5805 5691 381 250 11 33 chr12 68712144 68712236 -75074219 - L2 LINE L2 -34 3279 3190 1967 121 0 30 chr12 68712269 68712574 -75073881 - AluSx SINE Alu -16 296 1 1430 179 136 16 chr12 68713078 68713386 -75073069 + MER2 DNA MER2_type 1 345 0 22 0 0 0 chr12 68713386 68713408 -75073047 + AT_rich Low_complexity Low_complexity 1 22 0 524 220 178 58 chr12 68714511 68714702 -75071753 - MER58C DNA MER1_type 0 215 2 23 0 0 0 chr12 68715265 68715288 -75071167 + AT_rich Low_complexity Low_complexity 1 23 0 397 303 129 0 chr12 68715616 68715771 -75070684 + MIR SINE MIR 36 210 -52 26 50 0 0 chr12 68716240 68716280 -75070175 + AT_rich Low_complexity Low_complexity 1 40 0 347 214 39 29 chr12 68716702 68716805 -75069650 + L1ME LINE L1 5566 5669 -452 30 77 0 0 chr12 68716971 68717036 -75069419 + AT_rich Low_complexity Low_complexity 1 65 0 1196 173 124 67 chr12 68717148 68717431 -75069024 - AluJb SINE Alu -3 299 1 5325 139 68 38 chr12 68717851 68720131 -75066324 + L1MA5 LINE L1 3909 6298 -2 2096 96 0 3 chr12 68720138 68720450 -75066005 + AluY SINE Alu 1 311 0 421 211 12 149 chr12 68720829 68720990 -75065465 - MER2 DNA MER2_type 0 345 207 1181 82 88 6 chr12 68720990 68721172 -75065283 + MER30 DNA MER1_type 1 197 -33 1013 177 56 15 chr12 68721189 68721387 -75065068 - MER2 DNA MER2_type -133 212 7 356 325 107 41 chr12 68721771 68721968 -75064487 - L3 LINE CR1 -810 767 558 350 317 118 16 chr12 68721977 68722163 -75064292 - MIR SINE MIR -13 249 45 244 221 59 29 chr12 68722234 68722302 -75064153 - L3 LINE CR1 -1074 503 434 1038 262 82 15 chr12 68722342 68722670 -75063785 + L1MB1 LINE L1 1596 1945 -5541 452 290 53 48 chr12 68722724 68722931 -75063524 + L1MB1 LINE L1 1782 1989 -5497 2180 111 0 0 chr12 68722954 68723252 -75063203 + AluY SINE Alu 1 298 -13 1877 235 103 31 chr12 68723435 68724002 -75062453 + L1MB1 LINE L1 2154 2709 -4777 185 0 0 39 chr12 68724002 68724028 -75062427 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1877 235 103 31 chr12 68724028 68724309 -75062146 + L1MB1 LINE L1 2709 2968 -4518 645 200 18 14 chr12 68724320 68724468 -75061987 - Tigger7 DNA MER2_type -573 132 2 8561 188 155 61 chr12 68724470 68725322 -75061133 + L1MB1 LINE L1 2879 3650 -3937 1496 132 0 0 chr12 68725322 68725534 -75060921 + AluJo SINE Alu 93 304 -8 8561 188 155 61 chr12 68725534 68726795 -75059660 + L1MB1 LINE L1 3650 4791 -2796 2136 115 3 10 chr12 68726795 68727100 -75059355 + AluSx SINE Alu 2 304 -8 8561 188 155 61 chr12 68727100 68727316 -75059139 + L1MB1 LINE L1 4791 4985 -2602 774 137 16 8 chr12 68727316 68727440 -75059015 + AluJo SINE Alu 1 125 -187 8561 188 155 61 chr12 68727440 68729273 -75057182 + L1MB1 LINE L1 4985 7582 -5 2150 97 3 10 chr12 68729754 68730052 -75056403 + AluSq SINE Alu 11 306 -7 24 0 0 0 chr12 68730163 68730187 -75056268 + AT_rich Low_complexity Low_complexity 1 24 0 814 229 6 24 chr12 68730852 68731022 -75055433 + AluJo SINE Alu 135 301 -11 277 321 18 46 chr12 68731445 68731479 -75054976 - MER5A DNA MER1_type -71 118 85 1067 231 18 9 chr12 68731479 68731700 -75054755 + MER58A DNA MER1_type 1 223 -1 277 321 18 46 chr12 68731700 68731774 -75054681 - MER5A DNA MER1_type -104 85 13 21 36 0 0 chr12 68732567 68732595 -75053860 + AT_rich Low_complexity Low_complexity 1 28 0 408 147 0 0 chr12 68734924 68734992 -75051463 - Alu SINE Alu -10 302 235 1287 172 8 8 chr12 68734992 68735230 -75051225 - L1M4 LINE L1 -358 5816 5579 1889 100 50 0 chr12 68735290 68735569 -75050886 + AluSx SINE Alu 9 301 -11 883 275 23 53 chr12 68735569 68735965 -75050490 + MER93a LTR ERV1 19 402 0 26 0 0 0 chr12 68736142 68736168 -75050287 + AT_rich Low_complexity Low_complexity 1 26 0 1618 167 39 26 chr12 68736168 68736474 -75049981 + AluJo SINE Alu 1 310 -2 372 328 90 15 chr12 68736534 68736735 -75049720 - MIR SINE MIR -43 219 4 1942 69 38 4 chr12 68736998 68737259 -75049196 - AluY SINE Alu -41 270 1 198 304 0 0 chr12 68737665 68737711 -75048744 + MIR SINE MIR 30 75 -133 272 292 80 8 chr12 68737891 68738014 -75048441 + MIR3 SINE MIR 60 197 -11 628 230 215 0 chr12 68738901 68739092 -75047363 - L1MEc LINE L1 -6129 267 36 231 159 0 136 chr12 68739095 68739183 -75047272 + L1MC5 LINE L1 7859 7934 -27 269 159 16 0 chr12 68739441 68739504 -75046951 + CT-rich Low_complexity Low_complexity 1 64 0 2316 264 94 32 chr12 68739726 68740957 -75045498 - L2 LINE L2 0 3313 1991 26 0 0 0 chr12 68741108 68741134 -75045321 + AT_rich Low_complexity Low_complexity 1 26 0 514 361 11 0 chr12 68741722 68741902 -75044553 - MIR3 SINE MIR -23 185 4 359 258 86 55 chr12 68742015 68742188 -75044267 - MIR SINE MIR -56 152 17 2184 102 3 0 chr12 68742236 68742530 -75043925 + AluSq SINE Alu 1 295 -18 809 319 111 6 chr12 68742754 68742971 -75043484 + L3 LINE CR1 824 1089 -488 1706 139 6 63 chr12 68742971 68743287 -75043168 + AluJb SINE Alu 1 298 -14 809 319 111 6 chr12 68743287 68743401 -75043054 + L3 LINE CR1 1089 1190 -387 296 268 71 34 chr12 68743621 68743806 -75042649 - LTR33A LTR ERVL -2 521 358 185 0 40 0 chr12 68743855 68743880 -75042575 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 191 35 0 35 chr12 68744224 68744253 -75042202 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 983 221 44 25 chr12 68744256 68744460 -75041995 - AluJb SINE Alu -103 209 2 2589 112 41 17 chr12 68744585 68744963 -75041492 + MSTA LTR MaLR 1 391 -37 1755 162 36 7 chr12 68744963 68745265 -75041190 - AluSx SINE Alu -1 311 1 2589 112 41 17 chr12 68745265 68745304 -75041151 + MSTA LTR MaLR 391 428 0 246 359 11 0 chr12 68745319 68745411 -75041044 + MIR SINE MIR 168 260 -2 2995 223 76 16 chr12 68745697 68746630 -75039825 + L1ME2 LINE L1 5153 6144 -20 360 105 18 0 chr12 68746764 68746821 -75039634 - Alu SINE Alu -245 58 1 359 258 86 55 chr12 68746868 68747041 -75039414 + MIR SINE MIR 17 191 -56 2645 163 12 21 chr12 68748162 68748679 -75037776 - L1MA9 LINE L1 -1 6311 5800 2693 145 10 7 chr12 68748768 68749456 -75036999 - L1MA9 LINE L1 -729 5583 4890 199 262 168 63 chr12 68750144 68750335 -75036120 - L2 LINE L2 -427 2887 2677 268 312 160 21 chr12 68750547 68750784 -75035671 + L2 LINE L2 2230 2499 -815 2126 116 36 7 chr12 68751454 68751757 -75034698 + AluSx SINE Alu 1 312 0 689 212 28 47 chr12 68751757 68751969 -75034486 + L1M4 LINE L1 3840 4047 -2099 387 309 80 6 chr12 68753619 68753794 -75032661 + MER5A DNA MER1_type 2 189 0 1964 138 13 10 chr12 68754736 68755047 -75031408 + AluJb SINE Alu 1 312 0 185 81 0 54 chr12 68755050 68755087 -75031368 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 435 19 0 0 chr12 68755617 68755669 -75030786 + (TG)n Simple_repeat Simple_repeat 1 52 0 888 181 16 21 chr12 68756114 68756302 -75030153 + MER53 DNA DNA 1 187 -2 227 239 15 0 chr12 68756467 68756534 -75029921 + CT-rich Low_complexity Low_complexity 1 68 0 1308 189 49 25 chr12 68756534 68756996 -75029459 - AluJb SINE Alu 0 469 1 1014 273 100 33 chr12 68757124 68757582 -75028873 + L2 LINE L2 2468 2956 -358 241 311 6 15 chr12 68757627 68757787 -75028668 + L2 LINE L2 3074 3272 0 32 0 0 0 chr12 68757933 68757965 -75028490 + AT_rich Low_complexity Low_complexity 1 32 0 247 349 72 20 chr12 68758272 68758424 -75028031 - MIR SINE MIR -90 172 13 651 232 135 11 chr12 68760048 68760233 -75026222 - MER63A DNA MER1_type -2 208 1 525 248 82 18 chr12 68760707 68760892 -75025563 + MIR SINE MIR 64 259 -3 326 187 11 0 chr12 68762597 68762688 -75023767 + GA-rich Low_complexity Low_complexity 2 93 0 211 426 0 0 chr12 68762695 68762756 -75023699 + T-rich Low_complexity Low_complexity 1 61 0 300 304 35 0 chr12 68762756 68762871 -75023584 - L1M4 LINE L1 -2947 3199 3081 213 139 0 0 chr12 68762897 68762940 -75023515 + (T)n Simple_repeat Simple_repeat 1 43 0 241 250 0 0 chr12 68762964 68763020 -75023435 + T-rich Low_complexity Low_complexity 1 56 0 268 246 16 0 chr12 68763985 68764046 -75022409 - MIR SINE MIR -10 252 191 353 303 136 51 chr12 68764325 68764738 -75021717 + L1M4 LINE L1 2407 2854 -3292 2701 224 48 5 chr12 68764775 68765439 -75021016 + L1M4 LINE L1 4554 5246 -900 191 35 0 35 chr12 68765444 68765473 -75020982 + (TA)n Simple_repeat Simple_repeat 2 29 0 439 226 13 0 chr12 68765492 68765601 -75020854 + L1M4 LINE L1 5524 5634 -531 2196 119 3 0 chr12 68765628 68765939 -75020516 + AluSx SINE Alu 1 312 0 667 291 86 47 chr12 68766382 68766764 -75019691 + MLT1J LTR MaLR 1 397 -114 321 302 94 13 chr12 68766859 68767018 -75019437 - L1M4 LINE L1 -3838 2308 2137 234 274 16 0 chr12 68767041 68767103 -75019352 - MLT1K LTR MaLR -20 568 506 473 246 0 16 chr12 68769991 68770117 -75016338 - L1ME LINE L1 -359 5762 5639 719 249 61 46 chr12 68770118 68770379 -75016076 - LTR33 LTR ERVL -3 518 254 463 253 247 0 chr12 68770385 68770535 -75015920 + MER5A DNA MER1_type 3 189 0 597 263 98 40 chr12 68770538 68770762 -75015693 - LTR33 LTR ERVL -271 250 14 548 311 63 38 chr12 68770773 68771140 -75015315 - L1ME LINE L1 -476 5645 5270 2357 163 63 42 chr12 68771345 68771818 -75014637 - MLT1D LTR MaLR 0 505 23 413 304 43 7 chr12 68772580 68772718 -75013737 + MIR SINE MIR 49 191 -71 1643 177 36 50 chr12 68772728 68773090 -75013365 + MLT1A1 LTR MaLR 8 364 -1 258 143 48 0 chr12 68773094 68773136 -75013319 + MIR SINE MIR 201 244 -18 796 212 195 53 chr12 68773180 68773406 -75013049 + MIR SINE MIR 5 262 0 274 260 123 0 chr12 68773670 68773743 -75012712 + MIR SINE MIR 40 121 -141 1585 176 25 32 chr12 68773771 68774055 -75012400 - AluJo SINE Alu -30 282 1 573 273 38 98 chr12 68774450 68774807 -75011648 - L2 LINE L2 -177 3136 2813 510 258 113 13 chr12 68774807 68774966 -75011489 - MER5B DNA MER1_type -1 177 3 573 273 38 98 chr12 68774966 68775090 -75011365 - L2 LINE L2 -500 2813 2683 193 167 119 0 chr12 68775206 68775248 -75011207 + L2 LINE L2 3263 3309 -4 1937 136 79 47 chr12 68775906 68776310 -75010145 - MER4B LTR ERV1 -193 417 1 2670 177 46 22 chr12 68776313 68776855 -75009600 + MER57-int LTR ERV1 3692 4246 -690 298 190 152 13 chr12 68776864 68776943 -75009512 + LTR37A LTR ERV1 4 93 -333 461 163 0 35 chr12 68777000 68777086 -75009369 + MER57-int LTR ERV1 3844 3926 -945 1725 119 59 56 chr12 68777242 68777579 -75008876 + MER44D DNA MER2_type 1 608 -1 754 257 17 56 chr12 68777579 68777867 -75008588 + MER57-int LTR ERV1 6867 7143 -394 736 211 22 43 chr12 68777869 68778191 -75008264 + MER93b LTR ERV1 1 392 -10 193 263 221 0 chr12 68778607 68778702 -75007753 - L2 LINE L2 -9 3263 3148 416 284 86 0 chr12 68778980 68779096 -75007359 + MIR SINE MIR 1 126 -136 22 88 0 0 chr12 68780142 68780199 -75006256 + AT_rich Low_complexity Low_complexity 1 57 0 229 193 105 0 chr12 68780341 68780398 -75006057 + MIR SINE MIR 89 151 -57 34 0 0 0 chr12 68780816 68780850 -75005605 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr12 68780988 68781010 -75005445 + AT_rich Low_complexity Low_complexity 1 22 0 572 168 14 98 chr12 68781392 68781535 -75004920 + FLAM_A SINE Alu 1 131 -2 265 310 75 75 chr12 68781612 68781825 -75004630 + MIR SINE MIR 1 213 -49 362 355 122 0 chr12 68782849 68783046 -75003409 + MIR SINE MIR 21 241 -21 1186 181 123 17 chr12 68783116 68783408 -75003047 + MER33 DNA MER1_type 2 324 0 181 270 127 0 chr12 68784201 68784264 -75002191 - MIR3 SINE MIR -26 182 112 466 256 16 62 chr12 68784338 68784467 -75001988 + MIR SINE MIR 9 131 -131 3442 106 24 3 chr12 68784723 68785280 -75001175 - L1M4 LINE L1 -71 6103 5494 2144 109 52 30 chr12 68785414 68785781 -75000674 - THE1C LTR MaLR 0 375 1 240 336 102 16 chr12 68786863 68786991 -74999464 + L2 LINE L2 3126 3264 -8 439 280 49 80 chr12 68787438 68787663 -74998792 + MIR SINE MIR 31 248 -14 315 322 41 25 chr12 68789575 68789696 -74996759 - L2 LINE L2 -11 3261 3139 23 33 0 0 chr12 68789996 68790026 -74996429 + AT_rich Low_complexity Low_complexity 1 30 0 688 317 4 49 chr12 68790943 68791208 -74995247 - MIR SINE MIR 0 262 10 21 36 0 0 chr12 68791969 68791997 -74994458 + AT_rich Low_complexity Low_complexity 1 28 0 2245 82 65 34 chr12 68792460 68792813 -74993642 - THE1B LTR MaLR 0 364 1 1403 55 0 0 chr12 68792882 68793047 -74993408 + AluY SINE Alu 137 301 -10 256 122 0 102 chr12 68793524 68793573 -74992882 + AluJ/FRAM SINE Alu 231 274 -28 261 0 0 0 chr12 68793578 68793607 -74992848 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 1823 153 7 7 chr12 68793708 68794015 -74992440 - AluJb SINE Alu 0 307 1 6287 211 85 22 chr12 68794622 68795140 -74991315 + L1MC/D LINE L1 3364 3848 -2411 2044 101 29 49 chr12 68795140 68795446 -74991009 + AluSq SINE Alu 1 300 -13 6287 211 85 22 chr12 68795446 68796969 -74989486 + L1MC/D LINE L1 3848 5516 -743 1993 127 25 69 chr12 68796969 68797550 -74988905 - MER51A LTR ERV1 0 634 1 1375 133 12 16 chr12 68797550 68797793 -74988662 + L1MC/D LINE L1 5522 5776 -389 1538 175 61 37 chr12 68798548 68798874 -74987581 - MER2 DNA MER2_type -6 339 6 24 53 0 0 chr12 68799012 68799050 -74987405 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 68799948 68799971 -74986484 + AT_rich Low_complexity Low_complexity 1 23 0 1017 194 140 37 chr12 68800236 68800577 -74985878 + MER93b LTR ERV1 1 373 0 420 55 0 0 chr12 68801857 68801912 -74984543 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2021 120 14 3 chr12 68801928 68802220 -74984235 - AluSq SINE Alu -18 295 1 1298 250 103 7 chr12 68802223 68802679 -74983776 - L1MEc LINE L1 -4333 2063 1564 1517 258 46 30 chr12 68802710 68803242 -74983213 - L1MEc LINE L1 -4898 1498 951 2291 110 0 0 chr12 68803242 68803541 -74982914 - AluSx SINE Alu -13 299 1 1517 258 46 30 chr12 68803541 68803682 -74982773 - L1MEc LINE L1 -5445 951 814 498 351 13 23 chr12 68804661 68805046 -74981409 - L1MEc LINE L1 -5658 738 358 963 157 8 2 chr12 68805046 68805365 -74981090 + CT-rich Low_complexity Low_complexity 1 499 0 858 156 11 6 chr12 68805386 68805565 -74980890 + CT-rich Low_complexity Low_complexity 1 180 0 267 31 0 0 chr12 68806617 68806649 -74979806 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 777 239 38 60 chr12 68807013 68807354 -74979101 - L1ME1 LINE L1 -18 6148 5891 331 254 66 25 chr12 68807357 68807554 -74978901 - MER20B DNA MER1_type -21 762 558 755 141 70 0 chr12 68807815 68807943 -74978512 + AluSg/x SINE Alu 156 292 -20 766 241 105 19 chr12 68807943 68808200 -74978255 - MER20B DNA MER1_type -39 180 1 347 144 14 3 chr12 68808689 68808755 -74977700 - L1PA16 LINE L1 -4 6161 6093 296 156 61 73 chr12 68808978 68809137 -74977318 - L1ME1 LINE L1 -672 5449 5313 380 260 0 8 chr12 68809332 68809455 -74977000 + (TA)n Simple_repeat Simple_repeat 1 122 0 454 274 52 50 chr12 68810010 68810209 -74976246 - L1MC/D LINE L1 -2140 5668 5468 25 31 0 0 chr12 68810210 68810242 -74976213 + AT_rich Low_complexity Low_complexity 1 32 0 1969 159 7 3 chr12 68810498 68810807 -74975648 - AluJo SINE Alu -2 310 1 1124 240 28 31 chr12 68810935 68811256 -74975199 - L1ME3A LINE L1 -9 6161 5842 301 125 0 18 chr12 68811261 68811317 -74975138 + MADE1 DNA Mariner 1 55 -25 578 234 76 0 chr12 68811323 68811481 -74974974 - L1ME3A LINE L1 -342 5828 5659 222 150 0 0 chr12 68811481 68811521 -74974934 + (TA)n Simple_repeat Simple_repeat 2 41 0 369 273 0 0 chr12 68811534 68811622 -74974833 - L1MC4 LINE L1 -1340 6702 6615 1037 232 96 7 chr12 68811623 68812122 -74974333 - L1ME3A LINE L1 -498 5672 5123 428 252 112 56 chr12 68813303 68813553 -74972902 - MER102a DNA MER1_type -8 322 59 866 144 98 6 chr12 68813574 68813748 -74972707 - L1MC2 LINE L1 0 6344 6155 2774 135 53 8 chr12 68813749 68814259 -74972196 - L1MC3 LINE L1 -184 7601 7069 530 348 49 53 chr12 68814266 68814734 -74971721 + L2 LINE L2 2807 3272 0 245 277 129 20 chr12 68814874 68814975 -74971480 + L2 LINE L2 3202 3313 0 655 243 63 39 chr12 68815957 68816163 -74970292 + MIR SINE MIR 2 212 -50 180 0 0 0 chr12 68816521 68816541 -74969914 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2322 88 3 0 chr12 68816729 68817037 -74969418 - AluSx SINE Alu -3 309 1 380 71 18 0 chr12 68817429 68817485 -74968970 + (CAT)n Simple_repeat Simple_repeat 3 59 0 26 0 0 0 chr12 68817677 68817703 -74968752 + GC_rich Low_complexity Low_complexity 1 26 0 290 115 19 0 chr12 68820416 68820468 -74965987 + CT-rich Low_complexity Low_complexity 1 53 0 30 27 0 0 chr12 68820881 68820918 -74965537 + AT_rich Low_complexity Low_complexity 1 37 0 3384 152 0 4 chr12 68821303 68821830 -74964625 + MER1A DNA MER1_type 2 526 -1 463 314 140 34 chr12 68821885 68822213 -74964242 + L1MC/D LINE L1 5410 5772 -2036 3290 117 61 22 chr12 68822296 68822345 -74964110 - MER1A DNA MER1_type -2174 526 480 2554 75 0 0 chr12 68822345 68822652 -74963803 - AluSg SINE Alu -1 309 3 3290 117 61 22 chr12 68822652 68823108 -74963347 - MER1A DNA MER1_type -2220 480 1 189 0 0 0 chr12 68824111 68824132 -74962323 + (T)n Simple_repeat Simple_repeat 1 21 0 185 333 67 0 chr12 68826227 68826302 -74960153 - L2 LINE L2 -43 3229 3150 423 0 0 0 chr12 68826958 68827005 -74959450 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 300 95 47 chr12 68827800 68827990 -74958465 - L2 LINE L2 -236 3036 2838 1352 269 52 15 chr12 68828273 68828734 -74957721 + L2 LINE L2 2836 3313 0 564 208 123 0 chr12 68828733 68828863 -74957592 - MIR SINE MIR -96 166 21 * 270 346 75 0 chr12 68829219 68829326 -74957129 + MIR3 SINE MIR 89 203 -5 643 228 44 13 chr12 68829525 68829683 -74956772 - MIR SINE MIR -27 235 73 550 322 75 0 chr12 68829912 68830058 -74956397 + MER91A DNA MER1_type 28 184 -12 23 78 0 0 chr12 68831551 68831602 -74954853 + AT_rich Low_complexity Low_complexity 1 51 0 33 43 0 0 chr12 68831657 68831704 -74954751 + AT_rich Low_complexity Low_complexity 1 47 0 2136 134 0 3 chr12 68831799 68832106 -74954349 + AluSx SINE Alu 1 306 -6 1252 85 0 0 chr12 68832260 68832425 -74954030 - L1PA10 LINE L1 -1 6167 6003 22 94 0 0 chr12 68832935 68832999 -74953456 + AT_rich Low_complexity Low_complexity 1 64 0 687 188 220 0 chr12 68833257 68833443 -74953012 + MIR SINE MIR 36 262 0 379 283 0 9 chr12 68833500 68833606 -74952849 - MIR SINE MIR -118 144 40 1842 162 0 23 chr12 68833899 68834207 -74952248 + AluJb SINE Alu 1 301 -11 1970 136 18 0 chr12 68834800 68835080 -74951375 - AluSx SINE Alu -25 287 3 382 254 109 43 chr12 68835616 68835754 -74950701 - L3 LINE CR1 -2 1575 1429 1763 108 131 0 chr12 68835783 68836051 -74950404 + AluSq SINE Alu 5 307 -6 1468 185 65 96 chr12 68836566 68837026 -74949429 + MSTB2 LTR MaLR 5 450 -7 397 263 38 62 chr12 68837328 68837488 -74948967 - L3 LINE CR1 -247 1330 1175 986 215 54 21 chr12 68837760 68838075 -74948380 + MER34C LTR ERV1 59 427 -158 718 211 102 20 chr12 68838233 68838491 -74947964 + MER31-int LTR ERV1 1029 1797 -3074 298 254 0 0 chr12 68838491 68838554 -74947901 - MER2 DNA MER2_type -1 344 282 269 204 0 0 chr12 68838529 68838578 -74947877 - MER8 DNA MER2_type -60 179 131 * 1038 98 0 18 chr12 68838583 68838746 -74947709 + LTR8A LTR ERV1 1 160 -567 242 159 109 36 chr12 68838746 68838884 -74947571 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 2193 157 76 60 chr12 68838899 68839466 -74946989 + LTR8A LTR ERV1 152 727 0 343 214 101 11 chr12 68839469 68839558 -74946897 - MER8 DNA MER2_type -113 126 30 480 186 8 8 chr12 68839576 68839694 -74946761 + MER31-int LTR ERV1 1266 1383 -3553 274 238 40 50 chr12 68839812 68839913 -74946542 + MER31-int LTR ERV1 2021 2120 -2751 3837 155 40 6 chr12 68839952 68840008 -74946447 + MER50 LTR ERV1 1 54 -680 387 0 0 0 chr12 68840008 68840051 -74946404 + (CA)n Simple_repeat Simple_repeat 2 44 0 3837 155 40 6 chr12 68840051 68840692 -74945763 + MER50 LTR ERV1 54 722 -12 863 209 26 49 chr12 68840729 68841035 -74945420 + MER31-int LTR ERV1 1538 1836 -3100 395 200 118 51 chr12 68841165 68841360 -74945095 + MER31-int LTR ERV1 2100 2307 -2629 2995 207 86 35 chr12 68841698 68841842 -74944613 + MER31-int LTR ERV1 2644 2779 -2157 1925 141 34 7 chr12 68841842 68842139 -74944316 - AluSx SINE Alu -7 305 1 2995 207 86 35 chr12 68842139 68842988 -74943467 + MER31-int LTR ERV1 2779 3687 -1249 1004 264 22 4 chr12 68843276 68843507 -74942948 - MIR SINE MIR -3 259 25 338 277 0 27 chr12 68843769 68843881 -74942574 - MIR SINE MIR 0 262 154 968 201 32 26 chr12 68843902 68844091 -74942364 - AluJb SINE Alu -36 276 87 512 298 8 0 chr12 68844098 68844229 -74942226 - MIR SINE MIR -106 156 25 223 163 41 41 chr12 68845316 68845365 -74941090 + L2 LINE L2 3262 3310 -3 210 37 0 0 chr12 68845679 68845706 -74940749 + (TG)n Simple_repeat Simple_repeat 2 28 0 242 254 149 18 chr12 68847057 68847171 -74939284 - MIR SINE MIR -12 250 122 924 319 196 24 chr12 68847407 68848471 -74937984 - L2 LINE L2 -212 3060 1797 1121 266 81 41 chr12 68848670 68849194 -74937261 + L2 LINE L2 2757 3308 -5 222 37 0 0 chr12 68849201 68849228 -74937227 + (CA)n Simple_repeat Simple_repeat 2 28 0 422 214 22 0 chr12 68849555 68849644 -74936811 - MIR3 SINE MIR -6 202 112 21 0 0 0 chr12 68849645 68849666 -74936789 + AT_rich Low_complexity Low_complexity 1 21 0 267 313 91 19 chr12 68850683 68850820 -74935635 - MIR SINE MIR -41 167 20 316 344 106 0 chr12 68851159 68851310 -74935145 + MIR SINE MIR 48 214 -48 1620 92 0 18 chr12 68851332 68851550 -74934905 + AluSc SINE Alu 91 304 -5 248 279 249 24 chr12 68852112 68852277 -74934178 + L2 LINE L2 2836 3037 -276 222 283 22 54 chr12 68852463 68852555 -74933900 - MIR SINE MIR -162 100 12 202 276 0 0 chr12 68853965 68854023 -74932432 + CT-rich Low_complexity Low_complexity 1 58 0 25 31 0 0 chr12 68854281 68854313 -74932142 + GC_rich Low_complexity Low_complexity 1 32 0 203 283 0 0 chr12 68854402 68854462 -74931993 + (CCG)n Simple_repeat Simple_repeat 1 60 0 257 165 191 128 chr12 68855559 68855747 -74930708 + L2 LINE L2 3113 3312 -1 250 183 83 0 chr12 68855860 68855920 -74930535 - MIR SINE MIR -55 153 89 2424 30 9 64 chr12 68856101 68856429 -74930026 + AluSq SINE Alu 1 310 -3 209 329 27 14 chr12 68856636 68856709 -74929746 + MIR SINE MIR 5 78 -184 475 286 46 34 chr12 68856850 68857025 -74929430 + MIR SINE MIR 84 260 -2 2339 79 0 9 chr12 68857184 68857499 -74928956 + AluSx SINE Alu 1 312 0 1262 117 22 0 chr12 68857502 68857681 -74928774 + AluSg/x SINE Alu 116 298 -14 344 281 62 11 chr12 68858504 68858682 -74927773 + L1PA11 LINE L1 5986 6172 -2 3248 233 58 9 chr12 68858720 68859545 -74926910 + L1PA15-16 LINE L1 2848 3746 -3103 857 88 80 0 chr12 68859545 68859670 -74926785 - MER85 DNA T2_type -2 137 3 3248 233 58 9 chr12 68859670 68860013 -74926442 + L1PA15-16 LINE L1 3746 4071 -2778 193 281 18 18 chr12 68910141 68910198 -74876257 + L3 LINE CR1 320 376 -1201 454 263 109 19 chr12 68911710 68911866 -74874589 + MIR3 SINE MIR 33 202 -6 26 30 0 0 chr12 68912849 68912882 -74873573 + AT_rich Low_complexity Low_complexity 1 33 0 893 129 8 0 chr12 68913791 68913915 -74872540 + FLAM_C SINE Alu 1 125 -18 212 195 117 26 chr12 68914787 68914864 -74871591 - MIR SINE MIR -85 123 40 1311 180 36 104 chr12 68915257 68915701 -74870754 - MLT2D LTR ERVL 0 414 1 271 227 93 13 chr12 68915729 68915804 -74870651 + MER96 DNA MER1_type? 1 81 -94 2824 80 14 0 chr12 68916046 68916524 -74869931 - L1P3 LINE L1 -712 5460 4979 885 65 0 0 chr12 68916524 68916631 -74869824 - U6 snRNA snRNA 0 107 1 1712 159 0 31 chr12 68917138 68917427 -74869028 + AluJo SINE Alu 1 280 -32 306 0 0 0 chr12 68917428 68917462 -74868993 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 602 295 62 25 chr12 68919582 68919826 -74866629 + L2 LINE L2 2822 3074 -239 336 244 47 0 chr12 68919840 68919926 -74866529 - L1MC4 LINE L1 -1339 6703 6614 * 345 300 0 0 chr12 68919852 68919942 -74866513 + L1MC4 LINE L1 6614 6703 -1339 2823 69 10 4 chr12 68919948 68920329 -74866126 - L1PA7 LINE L1 -25 6129 5750 664 234 14 77 chr12 68920329 68920538 -74865917 + L2 LINE L2 3118 3313 0 211 56 93 0 chr12 68920998 68921052 -74865403 + (TA)n Simple_repeat Simple_repeat 2 60 0 573 227 49 12 chr12 68921095 68921258 -74865197 - L1MC5 LINE L1 -457 7504 7336 401 230 80 0 chr12 68921544 68921644 -74864811 - MIR SINE MIR -1 261 154 * 589 328 62 52 chr12 68921639 68922026 -74864429 + L2 LINE L2 2879 3269 -3 258 219 96 27 chr12 68922028 68922101 -74864354 - MIR SINE MIR -152 110 33 425 279 96 65 chr12 68922956 68923414 -74863041 - L2 LINE L2 -730 2584 2113 241 269 43 43 chr12 68923417 68923510 -74862945 - Charlie4 DNA MER1_type 0 1961 1869 323 358 102 14 chr12 68923585 68923878 -74862577 - L2 LINE L2 -1216 2098 1780 2000 133 3 29 chr12 68925191 68925506 -74860949 - AluSg SINE Alu -3 307 1 1824 102 157 6 chr12 68926869 68927182 -74859273 + MER46B DNA MER2_type 2 236 0 238 315 83 55 chr12 68927659 68927840 -74858615 - L2 LINE L2 0 3313 3128 793 192 51 0 chr12 68928364 68928612 -74857843 + FRAM SINE Alu 1 120 0 189 107 0 0 chr12 68930445 68930473 -74855982 + (T)n Simple_repeat Simple_repeat 1 28 0 34 72 0 0 chr12 68931352 68931421 -74855034 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr12 68932443 68932464 -74853991 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 68932517 68932553 -74853902 + AT_rich Low_complexity Low_complexity 1 36 0 708 128 0 0 chr12 68932690 68932792 -74853663 - AluSg/x SINE Alu -13 296 195 701 275 75 4 chr12 68932867 68933147 -74853308 - L1M4 LINE L1 -2553 3593 3294 2383 99 0 0 chr12 68933148 68933452 -74853003 - AluSx SINE Alu -8 304 1 2165 124 0 0 chr12 68933959 68934258 -74852197 + AluSx SINE Alu 4 302 -10 385 267 8 67 chr12 68935199 68935319 -74851136 - MIR SINE MIR -63 145 33 426 256 130 26 chr12 68935326 68935595 -74850860 - L1ME4a LINE L1 -106 6015 5719 267 314 108 0 chr12 68935630 68935732 -74850723 + L2 LINE L2 3198 3310 -3 425 247 22 94 chr12 68935735 68935958 -74850497 - L1ME4a LINE L1 -431 5690 5484 1711 172 6 31 chr12 68935999 68936319 -74850136 + AluJo SINE Alu 1 312 0 21 0 0 0 chr12 68936671 68936692 -74849763 + AT_rich Low_complexity Low_complexity 1 21 0 2111 127 10 3 chr12 68937488 68937796 -74848659 - AluSx SINE Alu -2 310 1 180 0 0 0 chr12 68937842 68937862 -74848593 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 443 33 0 0 chr12 68938091 68938152 -74848303 + L1PA2 LINE L1 6095 6155 0 275 415 72 35 chr12 68939790 68940192 -74846263 - L2 LINE L2 -17 3255 2839 1943 130 14 0 chr12 68941074 68941367 -74845088 - AluSx SINE Alu -2 310 14 315 0 0 0 chr12 68943647 68943682 -74842773 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 68945041 68945063 -74841392 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr12 68945188 68945239 -74841216 + AT_rich Low_complexity Low_complexity 1 51 0 627 287 102 47 chr12 68945792 68946256 -74840199 - MLT1J2 LTR MaLR 0 450 1 203 286 129 36 chr12 68946822 68946962 -74839493 - MIR SINE MIR -26 236 84 210 318 37 19 chr12 68946986 68947093 -74839362 + MIR SINE MIR 39 147 -115 21 0 0 0 chr12 68947725 68947746 -74838709 + AT_rich Low_complexity Low_complexity 1 21 0 1215 183 0 25 chr12 68948397 68948632 -74837823 + AluJo SINE Alu 83 311 -1 352 242 44 11 chr12 68949879 68949970 -74836485 - MIR3 SINE MIR -27 181 88 662 240 125 56 chr12 68950330 68950658 -74835797 + L1ME2 LINE L1 5808 6170 0 247 279 100 0 chr12 68950695 68950775 -74835680 + MIR SINE MIR 36 115 -93 3265 173 44 16 chr12 68951624 68952299 -74834156 - L1MB7 LINE L1 -19 6165 5472 2112 139 0 0 chr12 68952381 68952682 -74833773 + AluSq SINE Alu 3 303 -10 266 242 0 0 chr12 68952977 68953039 -74833416 - L1ME4a LINE L1 -68 6053 5992 2128 132 0 7 chr12 68953259 68953563 -74832892 - AluSx SINE Alu -10 302 1 209 219 27 96 chr12 68954903 68954976 -74831479 + MIR3 SINE MIR 139 206 -2 297 261 112 30 chr12 68955186 68955320 -74831135 + LTR16C LTR ERVL 346 490 -1 2062 138 0 0 chr12 68955381 68955685 -74830770 + AluSx SINE Alu 1 304 -8 852 135 8 8 chr12 68955805 68955938 -74830517 + AluSq/x SINE Alu 1 133 -180 216 0 0 0 chr12 68955938 68955962 -74830493 + (A)n Simple_repeat Simple_repeat 1 24 0 1930 125 0 17 chr12 68956530 68956840 -74829615 - AluSg SINE Alu 0 305 1 326 259 130 8 chr12 68957863 68957994 -74828461 - L2 LINE L2 -4 3309 3163 865 158 0 0 chr12 68958120 68958253 -74828202 + FLAM_A SINE Alu 1 133 0 348 240 48 0 chr12 68958358 68958462 -74827993 + Charlie7 DNA MER1_type 1 109 -2503 27 29 0 0 chr12 68958466 68958500 -74827955 + AT_rich Low_complexity Low_complexity 1 34 0 1772 144 54 35 chr12 68958643 68959011 -74827444 - THE1C LTR MaLR 0 375 1 385 211 232 17 chr12 68962145 68962283 -74824172 - MIR SINE MIR -65 143 20 237 98 0 0 chr12 68963734 68963775 -74822680 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 1675 141 60 9 chr12 68963775 68964084 -74822371 - L1MA4A LINE L1 -17 6286 5959 229 47 47 23 chr12 68964869 68964912 -74821543 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 912 199 11 6 chr12 68965105 68965281 -74821174 - MER45A DNA AcHobo -1 177 1 207 146 0 49 chr12 68966394 68966408 -74820047 + (GAA)n Simple_repeat Simple_repeat 3 16 -25 2136 147 7 0 chr12 68966408 68966715 -74819740 + AluSg SINE Alu 1 309 -1 207 146 0 49 chr12 68966715 68966741 -74819714 + (GAA)n Simple_repeat Simple_repeat 16 41 0 309 303 41 0 chr12 68967170 68967315 -74819140 + MER103 DNA DNA 9 159 -7 417 236 14 14 chr12 68967370 68967510 -74818945 - MER63 DNA MER1_type -6 1055 916 507 197 72 133 chr12 68968619 68968898 -74817557 - MER63 DNA MER1_type -6 1055 794 413 237 122 0 chr12 68968941 68969080 -74817375 - MLT1D LTR MaLR -349 156 1 3008 172 15 54 chr12 68969200 68969863 -74816592 + L1MB7 LINE L1 5543 6179 -5 184 250 109 16 chr12 68970844 68970908 -74815547 + L2 LINE L2 2258 2327 -987 183 336 55 18 chr12 68971328 68971438 -74815017 + MIR SINE MIR 149 262 0 2022 141 3 0 chr12 68971459 68971763 -74814692 + AluSx SINE Alu 6 310 -2 1041 240 67 28 chr12 68971766 68971889 -74814566 + L1ME LINE L1 5373 5490 -672 2050 130 0 7 chr12 68971889 68972188 -74814267 + AluSx SINE Alu 1 297 -15 1041 240 67 28 chr12 68972188 68972451 -74814004 + L1ME LINE L1 5490 5774 -388 299 316 32 27 chr12 68972567 68972754 -74813701 + L1PA13 LINE L1 1185 1372 -6202 258 327 9 59 chr12 68973624 68973772 -74812683 + L1PA13 LINE L1 2227 2362 -5219 2253 111 7 0 chr12 68973772 68974070 -74812385 + AluSx SINE Alu 1 300 -12 258 327 9 59 chr12 68974070 68974141 -74812314 + L1PA13 LINE L1 2362 2435 -5146 5670 212 7 13 chr12 68974149 68975743 -74810712 + L1PA13 LINE L1 2399 3988 -3596 37825 82 7 2 chr12 68975744 68981857 -74804598 + L1PA5 LINE L1 4 6143 -11 9860 209 33 6 chr12 68981860 68983694 -74802761 + L1 LINE L1 3965 5883 -1701 279 0 0 0 chr12 68983694 68983725 -74802730 + (CA)n Simple_repeat Simple_repeat 1 31 0 9860 209 33 6 chr12 68983725 68984352 -74802103 + L1 LINE L1 5883 6492 -1092 5200 116 25 24 chr12 68984353 68985259 -74801196 + L1PA16 LINE L1 5254 6160 -6 656 166 55 14 chr12 68985309 68985454 -74801001 + L1MA8 LINE L1 6028 6178 -113 1872 168 17 0 chr12 68985464 68985762 -74800693 + AluJo SINE Alu 1 303 -9 516 250 141 32 chr12 68985802 68986090 -74800365 - L2 LINE L2 -248 3065 2750 263 258 0 0 chr12 68986085 68986151 -74800304 + L2 LINE L2 2693 2758 -556 * 275 196 0 0 chr12 68986213 68986269 -74800186 + L2 LINE L2 2702 2757 -557 301 258 10 10 chr12 68986364 68986461 -74799994 + L1ME4a LINE L1 5791 5887 -234 286 233 0 17 chr12 68986487 68986607 -74799848 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 314 213 118 7 chr12 68986607 68986743 -74799712 + L1ME4a LINE L1 5970 6120 -1 189 250 0 21 chr12 68987734 68987782 -74798673 - L2 LINE L2 0 3313 3267 213 283 0 0 chr12 68988631 68988691 -74797764 + (CAGAGA)n Simple_repeat Simple_repeat 4 63 0 655 233 34 17 chr12 68988755 68988931 -74797524 - MLT1J2 LTR MaLR -3 447 269 351 293 10 0 chr12 68989099 68989198 -74797257 - MIR SINE MIR -2 260 161 246 233 0 0 chr12 68989203 68989246 -74797209 - MIR SINE MIR -208 54 12 181 385 22 0 chr12 68989266 68989357 -74797098 + MIR SINE MIR 49 141 -121 448 344 6 19 chr12 68989426 68989586 -74796869 - L2 LINE L2 0 3272 3115 375 78 0 0 chr12 68991043 68991094 -74795361 + (TG)n Simple_repeat Simple_repeat 1 51 0 1856 241 68 6 chr12 68991094 68991962 -74794493 + L1MC4 LINE L1 6819 7899 -143 1135 196 7 63 chr12 68992547 68992704 -74793751 + MLT1A1 LTR MaLR 1 136 -229 2271 115 0 3 chr12 68992704 68993000 -74793455 + AluSq SINE Alu 1 295 -18 1135 196 7 63 chr12 68993000 68993127 -74793328 + MLT1A1 LTR MaLR 136 269 -96 274 303 53 0 chr12 68993128 68993204 -74793251 - L2 LINE L2 -31 3282 3203 620 209 60 56 chr12 68993245 68993460 -74792995 - L1ME3A LINE L1 -13 6157 5942 370 250 85 85 chr12 68994615 68994803 -74791652 - MIR3 SINE MIR -7 201 14 21 0 0 0 chr12 68997417 68997438 -74789017 + AT_rich Low_complexity Low_complexity 1 21 0 1004 249 133 52 chr12 68997598 68998019 -74788436 + L2 LINE L2 2857 3311 -2 22 80 0 0 chr12 68998403 68998453 -74788002 + AT_rich Low_complexity Low_complexity 1 50 0 223 250 0 21 chr12 68998728 68998776 -74787679 + MIR SINE MIR 26 72 -190 413 339 55 0 chr12 69001802 69001929 -74784526 - L2 LINE L2 -3 3269 3136 340 298 151 67 chr12 69001943 69002393 -74784062 + L2 LINE L2 1278 1765 -1549 531 253 127 44 chr12 69002393 69002622 -74783833 - MLT1I LTR MaLR 0 409 162 251 414 17 0 chr12 69002652 69002768 -74783687 - MIR SINE MIR -117 145 28 187 217 0 24 chr12 69003129 69003212 -74783243 + GA-rich Low_complexity Low_complexity 4 84 0 292 328 52 0 chr12 69003392 69003526 -74782929 - L2 LINE L2 -1362 1952 1812 181 189 54 0 chr12 69003908 69003945 -74782510 + MIR SINE MIR 98 136 -72 382 284 57 21 chr12 69004603 69004797 -74781658 + L1ME LINE L1 5536 5736 -385 1536 255 131 26 chr12 69004889 69005622 -74780833 - HAL1 LINE L1 -1339 1168 359 1323 261 32 30 chr12 69005822 69006255 -74780200 - MLT1H LTR MaLR -108 441 8 625 162 19 91 chr12 69006371 69006525 -74779930 - L2 LINE L2 0 3313 3171 327 230 86 72 chr12 69007635 69007774 -74778681 - L2 LINE L2 -2 3311 3171 1928 41 29 0 chr12 69008181 69008426 -74778029 + L1PA4 LINE L1 5903 6154 -1 643 286 16 5 chr12 69008580 69008772 -74777683 - LTR33 LTR ERVL -327 194 1 3702 259 44 24 chr12 69008772 69008878 -74777577 - L2 LINE L2 -131 3182 3080 2133 121 7 0 chr12 69008878 69009176 -74777279 - AluSc SINE Alu -9 300 1 3702 259 44 24 chr12 69009176 69009471 -74776984 - L2 LINE L2 -233 3080 2792 2012 159 39 23 chr12 69009471 69009855 -74776600 - MLT1B LTR MaLR 0 390 1 3702 259 44 24 chr12 69009855 69010666 -74775789 - L2 LINE L2 -521 2792 1953 1046 245 147 66 chr12 69010694 69011311 -74775144 - L1MCa LINE L1 -4890 1533 1064 3375 72 5 19 chr12 69011311 69011743 -74774712 + SVA Other Other 953 1378 -8 1046 245 147 66 chr12 69011743 69011978 -74774477 - L1MCa LINE L1 -5359 1064 850 735 286 87 17 chr12 69012134 69012613 -74773842 - L1MCa LINE L1 -5905 696 25 285 260 160 20 chr12 69012613 69012713 -74773742 + MIR3 SINE MIR 83 196 -12 545 249 183 10 chr12 69014575 69014772 -74771683 + MIR SINE MIR 28 258 -4 418 285 8 16 chr12 69014854 69014977 -74771478 - L2 LINE L2 0 3313 3192 389 219 97 9 chr12 69015264 69015378 -74771077 - MER3 DNA MER1_type 0 209 86 795 258 22 0 chr12 69015442 69015624 -74770831 - MIR SINE MIR -2 260 75 701 206 29 0 chr12 69016341 69016477 -74769978 - MER5B DNA MER1_type -35 143 4 2215 105 3 7 chr12 69016569 69016864 -74769591 + AluSx SINE Alu 11 304 -8 638 227 81 15 chr12 69016985 69017183 -74769272 + LTR16B LTR ERVL 240 450 -14 379 374 7 0 chr12 69017184 69017331 -74769124 - L2 LINE L2 -591 2723 2576 685 142 0 18 chr12 69017565 69017678 -74768777 - L1PA11 LINE L1 0 6174 6064 1981 182 61 23 chr12 69017678 69018118 -74768337 - LTR2B LTR ERV1 0 490 34 3082 92 18 0 chr12 69018122 69018578 -74767877 - L1PA10 LINE L1 -79 6089 5626 190 108 81 27 chr12 69020446 69020483 -74765972 - L2 LINE L2 -17 3255 3217 326 293 0 21 chr12 69020718 69020858 -74765597 + MER117 DNA MER1_type 3 139 -58 1044 238 110 48 chr12 69020879 69021279 -74765176 - MER57B LTR ERV1 0 434 10 252 207 49 85 chr12 69021317 69021399 -74765056 - MER31-int LTR ERV1 -437 7100 7022 180 256 0 0 chr12 69021421 69021464 -74764991 - L2 LINE L2 -2073 1241 1199 469 255 14 64 chr12 69021471 69021612 -74764843 - MER31-int LTR ERV1 -588 6949 6816 1721 209 61 25 chr12 69021645 69022086 -74764369 - LTR2B LTR ERV1 0 490 34 1444 254 40 64 chr12 69022745 69023465 -74762990 - MER31-int LTR ERV1 -1357 6180 2277 3106 187 52 100 chr12 69023511 69023978 -74762477 - MER31-int LTR ERV1 -1716 5821 5333 2144 111 3 7 chr12 69023978 69024276 -74762179 + AluSx SINE Alu 1 297 -15 3106 187 52 100 chr12 69024276 69024895 -74761560 - MER31-int LTR ERV1 -2204 5333 4788 234 0 0 0 chr12 69025254 69025280 -74761175 + (TTG)n Simple_repeat Simple_repeat 2 27 0 527 148 7 84 chr12 69025308 69025450 -74761005 - MER31-int LTR ERV1 -4507 429 299 935 277 17 4 chr12 69026254 69026492 -74759963 - MER31-int LTR ERV1 -7294 243 3 462 171 86 9 chr12 69026803 69026908 -74759547 - Charlie4 DNA MER1_type -6 1955 1843 624 242 0 0 chr12 69027197 69027358 -74759097 - Charlie4 DNA MER1_type -1667 294 134 1808 169 7 14 chr12 69027456 69027746 -74758709 - AluJb SINE Alu -24 288 1 1915 164 34 13 chr12 69027749 69028128 -74758327 - L1MC1 LINE L1 -9 6324 5938 689 251 75 67 chr12 69028128 69028514 -74757941 + MLT1H LTR MaLR 48 436 -113 889 105 32 0 chr12 69028546 69028670 -74757785 + AluSg/x SINE Alu 137 264 -46 1198 74 11 6 chr12 69028676 69028851 -74757604 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 235 125 0 0 chr12 69028913 69028953 -74757502 - Charlie4 DNA MER1_type -1830 131 92 216 67 0 0 chr12 69029489 69029519 -74756936 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 274 215 15 0 chr12 69029769 69029834 -74756621 + L1M4 LINE L1 2131 2196 -3950 4342 171 50 13 chr12 69029838 69030729 -74755726 + L1PA6 LINE L1 11 938 -5208 22668 68 2 0 chr12 69030729 69034535 -74751920 + L1PA6 LINE L1 2316 6141 -13 4342 171 50 13 chr12 69034535 69034558 -74751897 + L1PA6 LINE L1 938 959 -5187 1126 174 24 0 chr12 69034569 69034935 -74751520 + L1MA9 LINE L1 5883 6309 -3 276 113 0 57 chr12 69035132 69035185 -74751270 + MIR SINE MIR 94 143 -119 261 233 17 0 chr12 69035428 69035488 -74750967 - MLT1L LTR MaLR -339 276 216 408 255 170 13 chr12 69036459 69036612 -74749843 - MIR SINE MIR 0 262 86 2108 110 21 0 chr12 69037861 69038143 -74748312 - AluSg SINE Alu -22 288 1 268 189 189 9 chr12 69038398 69038504 -74747951 - L1MA9 LINE L1 -24 6288 6164 288 0 0 0 chr12 69038504 69038536 -74747919 + (TG)n Simple_repeat Simple_repeat 1 32 0 215 357 102 20 chr12 69038655 69038753 -74747702 + L2 LINE L2 3158 3263 -9 2079 139 55 6 chr12 69038845 69039190 -74747265 + THE1B LTR MaLR 1 362 -2 471 0 0 0 chr12 69039768 69039828 -74746627 + L1HS LINE L1 6094 6153 -2 602 299 60 3 chr12 69040234 69040518 -74745937 - L1MCc LINE L1 -2553 4388 4089 2135 122 0 3 chr12 69040519 69040830 -74745625 - AluSx SINE Alu -2 310 1 907 115 14 36 chr12 69040830 69040969 -74745486 - AluSq/x SINE Alu -177 136 1 2480 220 82 18 chr12 69041035 69041719 -74744736 - L1MCc LINE L1 -2924 4017 3266 2239 126 0 0 chr12 69041719 69042020 -74744435 - AluSq SINE Alu -8 305 5 2480 220 82 18 chr12 69042020 69042185 -74744270 - L1MCc LINE L1 -3675 3266 3113 619 234 49 68 chr12 69042184 69042572 -74743883 - L1MCc LINE L1 -4895 1528 1262 * 23 0 0 0 chr12 69043484 69043507 -74742948 + AT_rich Low_complexity Low_complexity 1 23 0 1775 180 3 10 chr12 69043792 69044086 -74742369 - AluJb SINE Alu -20 292 1 1244 192 20 98 chr12 69044135 69044371 -74742084 - MLT1A2 LTR MaLR 0 374 182 2131 68 0 8 chr12 69044371 69044636 -74741819 - AluY SINE Alu -19 292 30 1244 192 20 98 chr12 69044636 69044805 -74741650 - MLT1A2 LTR MaLR -192 182 1 3288 156 4 7 chr12 69044808 69045750 -74740705 - L1P5 LINE L1 -577 5577 4639 409 253 13 0 chr12 69045751 69045830 -74740625 + MER5B DNA MER1_type 98 177 -1 4456 224 26 57 chr12 69045957 69047494 -74738961 + L1PA11 LINE L1 47 2599 -4985 * 17901 131 25 10 chr12 69047492 69050278 -74736177 + L1PA11 LINE L1 3466 6210 -1402 2056 130 10 3 chr12 69050278 69050578 -74735877 + AluSq SINE Alu 5 306 -7 17901 131 25 10 chr12 69050578 69051177 -74735278 + L1PA11 LINE L1 6210 6799 -813 1958 147 0 3 chr12 69051177 69051488 -74734967 - AluSx SINE Alu 0 310 1 17901 131 25 10 chr12 69051488 69052200 -74734255 + L1PA11 LINE L1 6799 7610 -2 2190 123 0 22 chr12 69052220 69052538 -74733917 - AluSx SINE Alu -1 311 1 185 255 59 0 chr12 69052951 69053002 -74733453 + MIR SINE MIR 73 126 -136 424 248 47 54 chr12 69053792 69053941 -74732514 - L2 LINE L2 -1 3312 3165 184 403 0 14 chr12 69054004 69054076 -74732379 + L2 LINE L2 3122 3192 -80 * 258 273 15 0 chr12 69054062 69054128 -74732327 + L2 LINE L2 2912 2978 -335 2117 131 7 0 chr12 69054918 69055224 -74731231 + AluSc SINE Alu 2 309 0 370 258 94 4 chr12 69055224 69055457 -74730998 - L1ME4a LINE L1 -85 6036 5746 471 176 12 0 chr12 69056167 69056252 -74730203 + MER58C DNA MER1_type 127 212 -3 248 206 155 52 chr12 69056343 69056440 -74730015 - MLT1J LTR MaLR -312 199 93 1148 254 114 11 chr12 69057782 69058141 -74728314 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr12 69058804 69058829 -74727626 + AT_rich Low_complexity Low_complexity 1 25 0 239 154 0 0 chr12 69058869 69058908 -74727547 - L2 LINE L2 -10 3303 3265 785 309 74 24 chr12 69059340 69059576 -74726879 - L2 LINE L2 0 3313 3049 2097 120 0 23 chr12 69059576 69059876 -74726579 + AluSx SINE Alu 1 293 -19 785 309 74 24 chr12 69059876 69060018 -74726437 - L2 LINE L2 -264 3049 2916 668 162 0 9 chr12 69060571 69060676 -74725779 - FLAM_A SINE Alu -19 123 20 406 238 25 0 chr12 69061053 69061133 -74725322 + L2 LINE L2 3183 3264 -8 189 0 0 0 chr12 69063035 69063056 -74723399 + (CAG)n Simple_repeat Simple_repeat 2 22 0 441 0 0 0 chr12 69063710 69063759 -74722696 + (TG)n Simple_repeat Simple_repeat 1 49 0 315 0 0 0 chr12 69064347 69064382 -74722073 + (CA)n Simple_repeat Simple_repeat 2 36 0 268 257 43 0 chr12 69065303 69065373 -74721082 - L2 LINE L2 -43 3229 3157 352 277 50 0 chr12 69065436 69065537 -74720918 + MIR SINE MIR 122 227 -35 406 303 152 25 chr12 69066226 69066272 -74720183 - MIR SINE MIR -20 242 203 2275 157 8 19 chr12 69066272 69066642 -74719813 + MER47A DNA MER2_type 1 366 0 406 303 152 25 chr12 69066642 69066793 -74719662 - MIR SINE MIR -59 203 20 866 176 0 0 chr12 69066931 69067067 -74719388 - AluSp/q SINE Alu -22 291 156 1407 200 120 96 chr12 69067286 69067832 -74718623 + MLT1F1 LTR MaLR 7 566 -1 2375 209 44 2 chr12 69068553 69069035 -74717420 + MLT1D LTR MaLR 1 502 -3 2755 35 0 0 chr12 69069707 69070021 -74716434 - AluYb8 SINE Alu -4 314 1 894 221 96 0 chr12 69070414 69070622 -74715833 - MLT1D LTR MaLR 0 505 278 524 237 108 56 chr12 69070731 69070963 -74715492 - MLT1D LTR MaLR -261 244 1 1931 174 67 3 chr12 69071052 69071396 -74715059 - MER47A DNA MER2_type 0 366 1 354 336 84 28 chr12 69071421 69071814 -74714641 - L1ME3 LINE L1 -324 5838 5424 306 291 0 19 chr12 69072330 69072433 -74714022 + LTR33A LTR ERVL 423 523 0 761 264 102 36 chr12 69072472 69072911 -74713544 - HAL1 LINE L1 -803 1704 1237 1356 139 0 43 chr12 69072915 69073145 -74713310 - AluJb SINE Alu -6 306 87 316 300 156 13 chr12 69073349 69073586 -74712869 - L1MDa LINE L1 -5126 1414 1144 182 293 107 53 chr12 69074154 69074304 -74712151 + L2 LINE L2 2717 2874 -440 592 271 45 0 chr12 69076554 69076584 -74709871 + MER5B DNA MER1_type 1 28 -150 2103 147 46 41 chr12 69076584 69076972 -74709483 + MLT1B LTR MaLR 1 390 0 592 271 45 0 chr12 69076972 69077096 -74709359 + MER5B DNA MER1_type 28 162 -16 283 279 6 6 chr12 69077259 69077420 -74709035 + (TA)n Simple_repeat Simple_repeat 2 162 0 394 286 0 10 chr12 69077573 69077671 -74708784 - L2 LINE L2 -18 3295 3199 180 342 13 38 chr12 69078671 69078750 -74707705 - MIR SINE MIR -100 108 32 273 75 0 0 chr12 69078956 69078996 -74707459 + (CA)n Simple_repeat Simple_repeat 2 41 0 6376 202 26 24 chr12 69079462 69081742 -74704713 + L1PBb LINE L1 3 1379 -5484 2323 98 0 3 chr12 69081742 69082039 -74704416 + AluY SINE Alu 1 296 -15 6376 202 26 24 chr12 69082039 69082301 -74704154 + L1PBb LINE L1 1379 1639 -5224 726 181 118 7 chr12 69082306 69082450 -74704005 + AluSg/x SINE Alu 121 280 -32 312 27 0 0 chr12 69082452 69082489 -74703966 + (CA)n Simple_repeat Simple_repeat 2 38 0 13813 212 30 25 chr12 69082490 69085506 -74700949 + L1PBb LINE L1 1609 4750 -2112 2156 139 30 15 chr12 69085506 69085838 -74700617 - MER1B DNA MER1_type 0 337 1 13813 212 30 25 chr12 69085838 69086992 -74699463 + L1PBb LINE L1 4750 5896 -966 1996 108 0 15 chr12 69086998 69087267 -74699188 - AluSc SINE Alu -44 265 1 1569 123 0 9 chr12 69087582 69087810 -74698645 + AluJb SINE Alu 87 312 0 2263 138 12 0 chr12 69087857 69088183 -74698272 + MER7A DNA MER2_type 4 331 -15 348 141 78 0 chr12 69088182 69088246 -74698209 + U2 snRNA snRNA 1 69 -119 * 414 226 18 24 chr12 69089214 69089382 -74697073 + (TTATA)n Simple_repeat Simple_repeat 1 167 0 414 225 178 52 chr12 69090187 69090418 -74696037 + MER50 LTR ERV1 10 269 -465 206 250 0 0 chr12 69090603 69090655 -74695800 + T-rich Low_complexity Low_complexity 1 52 0 1991 136 20 0 chr12 69090927 69091228 -74695227 + AluSq SINE Alu 1 307 -6 368 244 295 16 chr12 69091274 69091467 -74694988 + MIR SINE MIR 2 248 -14 531 246 144 12 chr12 69091615 69091782 -74694673 - MIR SINE MIR -19 243 55 837 199 74 0 chr12 69091816 69091992 -74694463 + MER5A DNA MER1_type 1 189 0 274 213 225 0 chr12 69092306 69092386 -74694069 - L2 LINE L2 -17 3296 3199 1634 167 133 9 chr12 69092600 69092923 -74693532 + MLT1A1 LTR MaLR 3 365 0 22 35 0 0 chr12 69094489 69094518 -74691937 + AT_rich Low_complexity Low_complexity 1 29 0 1098 212 74 52 chr12 69094533 69094860 -74691595 + L1ME4a LINE L1 5538 5877 -244 1015 62 78 0 chr12 69094860 69094989 -74691466 - MER85 DNA T2_type 0 139 1 1098 212 74 52 chr12 69094989 69095067 -74691388 + L1ME4a LINE L1 5877 5952 -169 372 291 10 19 chr12 69095861 69095964 -74690491 - MER5B DNA MER1_type -70 108 7 202 268 36 18 chr12 69096049 69096105 -74690350 - MIR3 SINE MIR -38 170 114 535 289 50 1 chr12 69096336 69096499 -74689956 - MIR SINE MIR -62 146 31 358 278 105 59 chr12 69096880 69097186 -74689269 + L2 LINE L2 2933 3252 -20 28 0 0 0 chr12 69097296 69097324 -74689131 + AT_rich Low_complexity Low_complexity 1 28 0 1837 148 36 39 chr12 69097713 69098077 -74688378 - L1MA9 LINE L1 0 6312 5950 427 278 43 115 chr12 69098692 69098926 -74687529 + L3 LINE CR1 1137 1353 -224 285 254 32 0 chr12 69098963 69099026 -74687429 + MER20B DNA MER1_type 4 68 -715 793 235 29 5 chr12 69099029 69099233 -74687222 + MER20B DNA MER1_type 546 754 -29 2303 105 16 0 chr12 69101574 69101878 -74684577 - AluSx SINE Alu -3 309 1 217 350 139 7 chr12 69103059 69103212 -74683243 - MIR SINE MIR -45 217 45 295 264 14 0 chr12 69103253 69103325 -74683130 + L2 LINE L2 3200 3272 0 313 276 106 24 chr12 69103436 69103606 -74682849 - L2 LINE L2 0 3313 3130 224 234 0 0 chr12 69104016 69104063 -74682392 - L2 LINE L2 -1 3312 3266 183 250 125 0 chr12 69104032 69104072 -74682383 - MIR SINE MIR -11 251 207 * 474 103 46 23 chr12 69104325 69104412 -74682043 - L1MC2 LINE L1 -5 6339 6251 279 256 0 81 chr12 69105309 69105395 -74681060 - MIR3 SINE MIR -26 182 104 213 183 67 33 chr12 69106691 69106751 -74679704 - MIR SINE MIR -168 94 33 799 214 34 0 chr12 69107305 69107483 -74678972 - MIR SINE MIR -4 258 75 261 301 39 32 chr12 69108616 69108772 -74677683 - L3b LINE CR1 -325 1258 1102 710 272 19 53 chr12 69109278 69109543 -74676912 + L1ME LINE L1 5490 5745 -376 384 228 9 35 chr12 69109578 69109692 -74676763 + L1ME4a LINE L1 5666 5776 -345 2026 136 6 28 chr12 69109735 69110052 -74676403 + AluSx SINE Alu 1 310 -2 249 163 0 0 chr12 69110066 69110115 -74676340 + GA-rich Low_complexity Low_complexity 2 50 0 2430 91 0 0 chr12 69110209 69110518 -74675937 + AluSc SINE Alu 1 309 0 322 269 108 30 chr12 69110549 69110716 -74675739 + L1ME4a LINE L1 5940 6119 -2 568 218 68 0 chr12 69110768 69110901 -74675554 + FLAM_C SINE Alu 2 143 0 226 244 33 33 chr12 69111018 69111108 -74675347 - L2 LINE L2 -193 3079 2990 300 27 0 0 chr12 69111896 69111933 -74674522 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 324 169 17 0 chr12 69112179 69112238 -74674217 + L1MB3 LINE L1 6083 6142 -41 1915 144 7 14 chr12 69112238 69112529 -74673926 + AluJo SINE Alu 1 289 -23 312 70 0 0 chr12 69113171 69113214 -74673241 + (TTAG)n Simple_repeat Simple_repeat 2 44 0 533 97 0 0 chr12 69113214 69113286 -74673169 - AluSg/x SINE Alu -26 286 215 346 320 66 74 chr12 69113293 69113537 -74672918 + L2 LINE L2 3029 3270 -2 189 348 125 9 chr12 69114042 69114154 -74672301 - L2 LINE L2 -228 3044 2920 418 303 97 11 chr12 69114271 69114456 -74671999 - L2 LINE L2 -514 2800 2600 2086 173 96 210 chr12 69114842 69115056 -74671399 + L2 LINE L2 1735 1972 -1342 683 192 0 8 chr12 69115056 69115181 -74671274 - FLAM_A SINE Alu -6 127 4 2086 173 96 210 chr12 69115181 69115373 -74671082 + L2 LINE L2 1972 2184 -1130 1092 156 78 39 chr12 69115373 69115578 -74670877 - MER20 DNA MER1_type -1 218 6 2086 173 96 210 chr12 69115578 69116224 -74670231 + L2 LINE L2 2184 2849 -465 833 254 244 0 chr12 69116201 69116496 -74669959 - L2 LINE L2 -865 2449 2083 * 2401 159 10 3 chr12 69116497 69116888 -74669567 - MER57A LTR ERV1 -9 394 1 430 226 0 11 chr12 69116888 69116981 -74669474 - L2 LINE L2 -1225 2089 1998 239 333 33 0 chr12 69118141 69118231 -74668224 + L3 LINE CR1 647 739 -838 2659 89 16 3 chr12 69118363 69118841 -74667614 + L1PA13 LINE L1 5139 5621 -542 612 97 11 0 chr12 69118841 69118931 -74667524 + L1PA13 LINE L1 6062 6155 -8 542 223 0 0 chr12 69118959 69119053 -74667402 + FLAM_A SINE Alu 28 121 -21 2140 90 0 17 chr12 69119063 69119362 -74667093 + AluSq SINE Alu 4 297 -16 775 327 149 37 chr12 69119372 69119408 -74667047 + L3 LINE CR1 821 852 -725 1633 183 0 3 chr12 69119408 69119708 -74666747 + AluJb SINE Alu 1 299 -13 775 327 149 37 chr12 69119708 69120341 -74666114 + L3 LINE CR1 852 1565 -12 1866 78 8 4 chr12 69120611 69120867 -74665588 + AluY SINE Alu 43 299 -12 1510 107 0 19 chr12 69120870 69121086 -74665369 - AluSq SINE Alu -101 212 1 3763 186 25 1 chr12 69121086 69121870 -74664585 - L1 LINE L1 -748 5398 4596 331 384 0 0 chr12 69122162 69122334 -74664121 + C-rich Low_complexity Low_complexity 1 172 0 30 45 0 0 chr12 69123413 69123457 -74662998 + GC_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 69123673 69123719 -74662736 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr12 69123781 69123802 -74662653 + GC_rich Low_complexity Low_complexity 1 21 0 192 338 13 13 chr12 69124089 69124166 -74662289 - L2 LINE L2 -214 3058 2982 272 190 13 0 chr12 69124166 69124245 -74662210 + (TG)n Simple_repeat Simple_repeat 1 80 0 2181 177 161 112 chr12 69125044 69125715 -74660740 + LTR28 LTR ERV1 317 1020 0 327 315 168 24 chr12 69125723 69126056 -74660399 + L2 LINE L2 2872 3252 -61 843 209 21 39 chr12 69126339 69126573 -74659882 - MER67C LTR ERV1 -307 403 174 299 326 127 45 chr12 69126766 69127033 -74659422 + L2 LINE L2 3005 3293 -20 255 214 18 0 chr12 69127039 69127095 -74659360 + (CA)n Simple_repeat Simple_repeat 2 58 0 1382 270 71 44 chr12 69127186 69127690 -74658765 + MLT1K LTR MaLR 37 554 -34 238 293 83 64 chr12 69128075 69128232 -74658223 - L2 LINE L2 -349 2964 2805 304 303 223 5 chr12 69128911 69129099 -74657356 + MLT1K LTR MaLR 44 272 -316 5946 112 14 10 chr12 69129282 69130215 -74656240 - L1P LINE L1 -1539 4607 3671 5007 162 1 35 chr12 69130693 69131540 -74654915 - HERVE LTR ERV1 -3494 4319 3502 212 351 0 0 chr12 69131872 69131929 -74654526 + C-rich Low_complexity Low_complexity 1 57 0 192 214 0 0 chr12 69131934 69131962 -74654493 + A-rich Low_complexity Low_complexity 1 28 0 659 214 8 0 chr12 69134624 69134755 -74651700 - FLAM_C SINE Alu -10 133 2 1369 98 5 24 chr12 69135141 69135346 -74651109 + AluSg/x SINE Alu 96 296 -16 411 269 33 61 chr12 69135370 69135615 -74650840 - L1MC4a LINE L1 -1712 6096 5859 1414 195 12 0 chr12 69135619 69135865 -74650590 + AluJo SINE Alu 1 249 -63 2208 202 20 2 chr12 69136643 69137133 -74649322 + L1 LINE L1 4900 5398 -748 1148 165 0 23 chr12 69137133 69137351 -74649104 + AluSq SINE Alu 1 213 -100 358 291 19 19 chr12 69137597 69137755 -74648700 + C-rich Low_complexity Low_complexity 2 159 0 810 215 9 23 chr12 69137980 69138194 -74648261 + AluY SINE Alu 95 305 -6 1083 252 16 4 chr12 69138672 69138914 -74647541 - MIR SINE MIR 0 262 18 674 331 21 16 chr12 69139063 69139305 -74647150 - MIR SINE MIR -6 256 14 211 319 192 39 chr12 69139754 69139983 -74646472 + L2 LINE L2 2817 3080 -192 1784 166 0 3 chr12 69140239 69140555 -74645900 + AluSx SINE Alu 1 315 0 1415 189 51 4 chr12 69141183 69141458 -74644997 - AluJo SINE Alu -24 288 1 1541 181 19 16 chr12 69141946 69142256 -74644199 - AluJo SINE Alu -1 311 1 21 36 0 0 chr12 69142370 69142398 -74644057 + AT_rich Low_complexity Low_complexity 1 28 0 3748 87 13 14 chr12 69142514 69142545 -74643910 - L1MA3 LINE L1 -333 5972 5942 2956 112 22 0 chr12 69142545 69142992 -74643463 - L1MA2 LINE L1 0 6304 5848 3748 87 13 14 chr12 69142992 69143514 -74642941 - L1MA3 LINE L1 -363 5942 5420 322 103 136 22 chr12 69143514 69143605 -74642850 - AluSc SINE Alu -35 264 186 2350 70 0 3 chr12 69143607 69143906 -74642549 + AluY SINE Alu 1 298 -13 1501 96 10 0 chr12 69143909 69144118 -74642337 - AluY SINE Alu -100 211 1 382 191 43 0 chr12 69145610 69145704 -74640751 + L1M4 LINE L1 2787 2884 -3262 23 54 0 0 chr12 69145793 69145830 -74640625 + AT_rich Low_complexity Low_complexity 1 37 0 3399 108 42 0 chr12 69146169 69146642 -74639813 + MER1A DNA MER1_type 37 529 0 207 0 0 0 chr12 69149112 69149135 -74637320 + (A)n Simple_repeat Simple_repeat 1 23 0 2235 102 0 7 chr12 69149135 69149439 -74637016 + AluSx SINE Alu 1 302 -10 1541 255 113 32 chr12 69150781 69151283 -74635172 + MLT1E LTR MaLR 51 593 0 204 290 28 65 chr12 69151357 69151464 -74634991 + L3 LINE CR1 212 314 -1263 362 286 33 0 chr12 69153660 69153751 -74632704 - L2 LINE L2 0 3313 3220 2074 231 91 63 chr12 69154185 69155220 -74631235 + L2 LINE L2 2238 3313 0 204 40 0 0 chr12 69156254 69156279 -74630176 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1564 186 3 36 chr12 69156370 69156677 -74629778 - AluJo SINE Alu -15 297 1 295 349 0 0 chr12 69157160 69157243 -74629212 + L3b LINE CR1 1437 1519 -64 189 0 0 0 chr12 69159231 69159252 -74627203 + (CGAG)n Simple_repeat Simple_repeat 2 22 0 321 310 17 17 chr12 69159852 69159968 -74626487 + L1MC4a LINE L1 5946 6061 -1747 30 27 0 0 chr12 69160018 69160055 -74626400 + AT_rich Low_complexity Low_complexity 1 37 0 1089 194 0 97 chr12 69160072 69160361 -74626094 + AluJo SINE Alu 18 278 -34 1256 275 38 33 chr12 69160391 69161111 -74625344 + L1MC4 LINE L1 6185 7002 -898 1183 148 9 52 chr12 69161121 69161350 -74625105 + AluJb SINE Alu 87 305 -7 1773 159 7 3 chr12 69161364 69161659 -74624796 + AluJo SINE Alu 1 296 -16 1566 113 0 13 chr12 69164209 69164440 -74622015 + AluSg/x SINE Alu 81 308 -2 221 311 42 42 chr12 69164991 69165110 -74621345 - L2 LINE L2 0 3272 3154 2054 101 10 27 chr12 69165111 69165407 -74621048 + AluSc SINE Alu 1 291 -18 2094 125 10 0 chr12 69165769 69166066 -74620389 - AluSx SINE Alu -12 300 1 442 245 233 0 chr12 69166412 69166571 -74619884 + MIR SINE MIR 51 246 -16 225 316 66 13 chr12 69166761 69166837 -74619618 + L3 LINE CR1 1283 1362 -215 857 193 23 12 chr12 69166858 69167029 -74619426 + FRAM SINE Alu 4 176 0 255 61 0 0 chr12 69167032 69167065 -74619390 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 239 133 22 0 chr12 69167064 69167109 -74619346 + A-rich Low_complexity Low_complexity 3 48 0 * 303 322 33 26 chr12 69167142 69167294 -74619161 + L3 LINE CR1 1418 1570 -7 2191 103 0 17 chr12 69167511 69167813 -74618642 + AluSx SINE Alu 1 297 -15 974 192 62 24 chr12 69167857 69168065 -74618390 + AluJb SINE Alu 87 302 -10 21 36 0 0 chr12 69168325 69168353 -74618102 + AT_rich Low_complexity Low_complexity 1 28 0 2518 74 0 0 chr12 69169031 69169340 -74617115 + AluSx SINE Alu 1 309 -3 204 224 20 20 chr12 69170565 69170614 -74615841 + L2 LINE L2 3138 3186 -86 446 273 25 0 chr12 69171835 69171956 -74614499 + MIR SINE MIR 13 136 -126 1018 163 0 12 chr12 69171976 69172142 -74614313 + FRAM SINE Alu 1 163 -13 501 254 0 0 chr12 69172145 69172255 -74614200 + MIR SINE MIR 153 262 0 1890 166 84 54 chr12 69172293 69172757 -74613698 - Charlie1b DNA MER1_type -6 517 40 23 0 0 0 chr12 69173803 69173826 -74612629 + AT_rich Low_complexity Low_complexity 1 23 0 306 179 0 18 chr12 69174034 69174090 -74612365 + L2 LINE L2 2927 2981 -332 423 292 53 39 chr12 69174537 69174951 -74611504 + L1MC4a LINE L1 4881 5300 -846 2411 62 3 34 chr12 69174951 69175272 -74611183 + AluY SINE Alu 1 311 0 857 261 99 34 chr12 69175348 69175792 -74610663 + L1MC4a LINE L1 5423 5895 -1913 1276 14 0 0 chr12 69176457 69176595 -74609860 - L1PA5 LINE L1 -4 6150 6013 22 35 0 0 chr12 69176757 69176786 -74609669 + GC_rich Low_complexity Low_complexity 1 29 0 498 324 40 25 chr12 69177276 69177551 -74608904 - MLT1K LTR MaLR 0 588 310 371 331 106 27 chr12 69177623 69177916 -74608539 - MLT1K LTR MaLR -272 316 1 381 243 126 0 chr12 69177919 69178030 -74608425 - MIR SINE MIR -89 173 49 659 86 0 0 chr12 69178273 69178354 -74608101 + AluSg/x SINE Alu 215 295 -15 268 307 133 0 chr12 69178513 69178663 -74607792 + MIR SINE MIR 92 261 -1 423 295 79 86 chr12 69178666 69178944 -74607511 - L2 LINE L2 -426 2888 2613 2067 146 58 3 chr12 69178944 69179273 -74607182 + MER7A DNA MER2_type 1 345 -1 1994 150 0 3 chr12 69179330 69179623 -74606832 + AluSx SINE Alu 1 292 -20 1640 176 24 39 chr12 69180017 69180353 -74606102 + MLT1A2 LTR MaLR 44 374 0 357 295 16 8 chr12 69180624 69180746 -74605709 - L1ME LINE L1 -322 5799 5677 466 255 35 14 chr12 69180849 69180990 -74605465 + L1ME3A LINE L1 3899 4042 -2104 637 285 148 7 chr12 69181125 69181423 -74605032 + L1ME3A LINE L1 5502 5841 -280 246 211 0 99 chr12 69183731 69183802 -74602653 + MIR SINE MIR 86 149 -113 2160 130 3 0 chr12 69186284 69186584 -74599871 + AluSx SINE Alu 1 301 -11 2641 98 36 14 chr12 69187648 69188004 -74598451 + THE1B LTR MaLR 1 364 0 414 262 191 7 chr12 69188004 69188145 -74598310 + MER5A DNA MER1_type 20 186 -3 884 156 224 62 chr12 69188217 69188344 -74598111 - MER58A DNA MER1_type -2197 223 118 2230 131 0 0 chr12 69188344 69188649 -74597806 + AluSx SINE Alu 1 305 -7 884 156 224 62 chr12 69188649 69188713 -74597742 - MER58A DNA MER1_type -2302 118 1 456 290 20 70 chr12 69188788 69188988 -74597467 + MIR SINE MIR 14 203 -59 686 278 53 45 chr12 69191706 69191951 -74594504 + L3 LINE CR1 1074 1320 -257 244 280 0 0 chr12 69192880 69192930 -74593525 + L3 LINE CR1 1417 1466 -111 234 271 0 17 chr12 69193009 69193068 -74593387 - L2 LINE L2 -22 3250 3193 2280 100 14 0 chr12 69193197 69193488 -74592967 - AluSg SINE Alu -15 295 1 708 214 8 0 chr12 69193510 69193641 -74592814 - FLAM_C SINE Alu -10 133 2 1445 98 5 24 chr12 69194027 69194232 -74592223 + AluSg/x SINE Alu 96 296 -16 636 278 58 55 chr12 69194256 69194505 -74591950 - L1MC4a LINE L1 -1712 6096 5844 1493 195 12 0 chr12 69194505 69194751 -74591704 + AluJo SINE Alu 1 249 -63 636 278 58 55 chr12 69194751 69194882 -74591573 - L1MC4a LINE L1 -1964 5844 5715 1546 139 0 0 chr12 69194882 69195098 -74591357 - AluJo SINE Alu -96 216 1 341 358 70 26 chr12 69195270 69195686 -74590769 - L1MC4a LINE L1 -1015 5131 4698 22 0 0 0 chr12 69196706 69196728 -74589727 + AT_rich Low_complexity Low_complexity 1 22 0 193 279 44 0 chr12 69197296 69197364 -74589091 + MIR SINE MIR 65 135 -73 236 230 48 71 chr12 69197365 69197491 -74588964 + L1ME3A LINE L1 5944 6066 -104 22 35 0 0 chr12 69197540 69197569 -74588886 + AT_rich Low_complexity Low_complexity 1 29 0 432 351 29 6 chr12 69198538 69198709 -74587746 - L3 LINE CR1 0 1577 1403 461 315 81 27 chr12 69198751 69199049 -74587406 - L3 LINE CR1 -898 679 366 394 305 54 18 chr12 69199795 69199962 -74586493 + MIR3 SINE MIR 10 182 -26 781 153 15 23 chr12 69200221 69200352 -74586103 + AluJo/FLAM SINE Alu 4 133 -169 1841 181 3 3 chr12 69200354 69200663 -74585792 + AluJb SINE Alu 1 309 -3 360 336 0 0 chr12 69201142 69201267 -74585188 + L2 LINE L2 2623 2747 -567 311 173 12 0 chr12 69201570 69201651 -74584804 + (CA)n Simple_repeat Simple_repeat 1 82 0 274 267 129 0 chr12 69201834 69201935 -74584520 + L2 LINE L2 3186 3299 -14 1556 148 72 4 chr12 69202070 69202347 -74584108 + L1M1 LINE L1 781 1076 -6489 20842 137 65 17 chr12 69202466 69204299 -74582156 + L1MA3 LINE L1 3 1747 -5818 2710 137 28 31 chr12 69204299 69204721 -74581734 + MSTB LTR MaLR 5 425 -1 20842 137 65 17 chr12 69204721 69205877 -74580578 + L1MA3 LINE L1 1747 3187 -4378 2436 93 0 3 chr12 69205877 69206187 -74580268 + AluY SINE Alu 1 309 -2 20842 137 65 17 chr12 69206187 69206701 -74579754 + L1MA3 LINE L1 3187 3675 -3890 13285 142 20 53 chr12 69206717 69209383 -74577072 + L1PA7 LINE L1 1 2539 -3922 17073 87 0 0 chr12 69209383 69212397 -74574058 + L1PA7 LINE L1 3451 6469 0 13285 142 20 53 chr12 69212397 69213654 -74572801 + L1PA7 LINE L1 2539 3835 -2626 5617 166 23 7 chr12 69213626 69214708 -74571747 + L1MA3 LINE L1 4614 5713 -748 * 1589 107 0 19 chr12 69214708 69214924 -74571531 + AluSq SINE Alu 1 212 -101 2489 67 0 3 chr12 69214927 69215226 -74571229 - AluY SINE Alu -13 298 1 314 111 91 37 chr12 69215228 69215319 -74571136 + AluSc SINE Alu 186 264 -35 3774 79 8 10 chr12 69215319 69215836 -74570619 + L1MA3 LINE L1 6839 7354 -370 3120 112 22 0 chr12 69215842 69216289 -74570166 + L1MA2 LINE L1 5848 6304 0 21 36 0 0 chr12 69216436 69216464 -74569991 + AT_rich Low_complexity Low_complexity 1 28 0 1691 172 17 17 chr12 69216578 69216875 -74569580 + AluJo SINE Alu 1 297 -15 1496 189 51 4 chr12 69217377 69217652 -74568803 + AluJo SINE Alu 1 288 -24 1871 166 0 3 chr12 69218280 69218596 -74567859 - AluSx SINE Alu 0 315 1 204 319 192 39 chr12 69218852 69219081 -74567374 - L2 LINE L2 -192 3080 2817 645 331 21 16 chr12 69219530 69219772 -74566683 + MIR SINE MIR 14 256 -6 1057 248 16 4 chr12 69219921 69220163 -74566292 + MIR SINE MIR 18 262 0 2490 76 3 0 chr12 69220643 69220947 -74565508 - AluY SINE Alu -6 305 1 395 191 43 0 chr12 69222438 69222532 -74563923 + L1M4 LINE L1 2787 2884 -3262 23 54 0 0 chr12 69222621 69222658 -74563797 + AT_rich Low_complexity Low_complexity 1 37 0 3379 108 42 0 chr12 69222997 69223470 -74562985 + MER1A DNA MER1_type 37 529 0 207 0 0 0 chr12 69225940 69225963 -74560492 + (A)n Simple_repeat Simple_repeat 1 23 0 2357 102 0 7 chr12 69225963 69226267 -74560188 + AluSx SINE Alu 1 302 -10 1611 251 143 30 chr12 69227578 69228111 -74558344 + MLT1E LTR MaLR 1 593 0 181 290 28 65 chr12 69228185 69228292 -74558163 + L3 LINE CR1 212 314 -1263 353 286 33 0 chr12 69230488 69230579 -74555876 - L2 LINE L2 0 3313 3220 2072 231 91 62 chr12 69231013 69232047 -74554408 + L2 LINE L2 2238 3313 0 204 40 0 0 chr12 69233081 69233106 -74553349 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1642 182 3 42 chr12 69233197 69233504 -74552951 - AluJo SINE Alu -17 295 1 277 349 0 0 chr12 69233987 69234070 -74552385 + L3b LINE CR1 1437 1519 -64 189 0 0 0 chr12 69236056 69236077 -74550378 + (CGAG)n Simple_repeat Simple_repeat 2 22 0 30 27 0 0 chr12 69236843 69236880 -74549575 + AT_rich Low_complexity Low_complexity 1 37 0 1172 183 3 100 chr12 69236897 69237186 -74549269 + AluJo SINE Alu 18 278 -34 1264 274 38 33 chr12 69237216 69237936 -74548519 + L1MC4 LINE L1 6185 7002 -898 1244 148 9 52 chr12 69237946 69238175 -74548280 + AluJb SINE Alu 87 305 -7 1885 159 7 3 chr12 69238189 69238484 -74547971 + AluJo SINE Alu 1 296 -16 311 191 0 0 chr12 69240988 69241035 -74545420 + Alu SINE Alu 1 47 -253 1826 70 0 4 chr12 69241036 69241264 -74545191 + AluSg/x SINE Alu 81 307 -3 221 311 42 42 chr12 69241814 69241933 -74544522 - L2 LINE L2 0 3272 3154 2092 95 10 27 chr12 69241934 69242230 -74544225 + AluSc SINE Alu 1 291 -18 2094 125 10 0 chr12 69242592 69242889 -74543566 - AluSx SINE Alu -12 300 1 442 245 233 0 chr12 69243235 69243394 -74543061 + MIR SINE MIR 51 246 -16 225 316 66 13 chr12 69243584 69243660 -74542795 + L3 LINE CR1 1283 1362 -215 857 193 23 12 chr12 69243681 69243852 -74542603 + FRAM SINE Alu 4 176 0 255 61 0 0 chr12 69243855 69243888 -74542567 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 239 133 22 0 chr12 69243887 69243932 -74542523 + A-rich Low_complexity Low_complexity 3 48 0 * 303 322 33 26 chr12 69243965 69244117 -74542338 + L3 LINE CR1 1418 1570 -7 2226 103 0 13 chr12 69244334 69244635 -74541820 + AluSx SINE Alu 1 297 -15 974 192 62 24 chr12 69244679 69244887 -74541568 + AluJb SINE Alu 87 302 -10 21 36 0 0 chr12 69245147 69245175 -74541280 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 69246236 69246258 -74540197 + AT_rich Low_complexity Low_complexity 1 22 0 1802 177 10 0 chr12 69246324 69246612 -74539843 + AluSx SINE Alu 1 291 -21 520 200 193 21 chr12 69247102 69247247 -74539208 + MIR SINE MIR 2 171 -91 261 0 0 0 chr12 69247255 69247284 -74539171 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2131 111 0 0 chr12 69247284 69247563 -74538892 - AluSx SINE Alu -33 279 1 466 233 52 9 chr12 69248615 69248731 -74537724 - MIR SINE MIR -130 132 12 1911 122 49 0 chr12 69250040 69250326 -74536129 - AluSx SINE Alu -2 310 11 22 0 0 0 chr12 69250778 69250800 -74535655 + AT_rich Low_complexity Low_complexity 1 22 0 3631 102 26 0 chr12 69251061 69251563 -74534892 + L1PB2 LINE L1 5634 6148 -3 1714 123 214 58 chr12 69251646 69251709 -74534746 + L1MB3 LINE L1 5676 5728 -455 192 77 0 0 chr12 69251709 69251735 -74534720 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 1714 123 214 58 chr12 69251735 69252101 -74534354 + L1MB3 LINE L1 5728 6183 0 492 347 171 6 chr12 69252200 69252563 -74533892 - L2 LINE L2 -14 3258 2836 1475 185 3 45 chr12 69252615 69252923 -74533532 + AluJo SINE Alu 1 295 -17 911 161 35 11 chr12 69253108 69253282 -74533173 - L1MB2 LINE L1 0 6171 5994 2314 107 69 3 chr12 69253282 69253628 -74532827 - THE1C LTR MaLR -1 374 6 3549 128 5 21 chr12 69253635 69254199 -74532256 - L1MB2 LINE L1 -184 5999 5445 402 204 97 11 chr12 69254213 69254306 -74532149 + MIR3 SINE MIR 105 205 -3 2213 106 0 0 chr12 69254806 69255120 -74531335 - AluSx SINE Alu 0 314 1 1934 100 8 4 chr12 69255492 69255751 -74530704 - AluSq SINE Alu -53 260 1 11606 43 1 2 chr12 69256051 69258193 -74528262 + L1PA5 LINE L1 4022 6173 0 208 339 0 0 chr12 69259075 69259140 -74527315 + MIR3 SINE MIR 144 208 0 213 331 73 73 chr12 69259395 69259546 -74526909 - L2 LINE L2 0 3272 3122 2193 92 0 4 chr12 69260543 69260847 -74525608 - AluSg SINE Alu 0 303 1 1050 249 18 9 chr12 69261267 69261492 -74524963 - MIR SINE MIR -27 235 9 2286 67 7 3 chr12 69261581 69261866 -74524589 + AluY SINE Alu 21 306 -5 279 213 0 75 chr12 69262591 69262671 -74523784 - MIR SINE MIR -79 183 110 * 1377 289 174 11 chr12 69262658 69263320 -74523135 - L2 LINE L2 -1550 1764 995 772 239 23 11 chr12 69263434 69263610 -74522845 + MER5B DNA MER1_type 1 178 0 225 0 0 0 chr12 69263618 69263643 -74522812 + (T)n Simple_repeat Simple_repeat 1 25 0 234 346 49 0 chr12 69263865 69263946 -74522509 + L2 LINE L2 3186 3270 -2 3898 246 124 42 chr12 69264828 69265933 -74520522 + HAL1 LINE L1 2 1303 -1204 1895 137 20 20 chr12 69265933 69266232 -74520223 + AluJb SINE Alu 1 299 -13 3898 246 124 42 chr12 69266232 69266861 -74519594 + HAL1 LINE L1 1303 1879 -628 2132 102 0 56 chr12 69266986 69267309 -74519146 - AluSg SINE Alu -5 305 1 1537 191 0 11 chr12 69267311 69267594 -74518861 - AluJb SINE Alu -11 301 22 4211 222 22 5 chr12 69267747 69268843 -74517612 + L1 LINE L1 3475 4631 -1515 245 352 8 23 chr12 69268927 69269101 -74517354 + CT-rich Low_complexity Low_complexity 1 171 0 238 253 23 23 chr12 69269366 69269453 -74517002 + CT-rich Low_complexity Low_complexity 5 91 0 1858 143 0 29 chr12 69270507 69270815 -74515640 + AluSx SINE Alu 1 299 -13 1402 154 9 136 chr12 69271501 69271676 -74514779 + AluJo SINE Alu 1 116 -196 228 35 0 0 chr12 69271676 69271705 -74514750 + (CA)n Simple_repeat Simple_repeat 2 30 0 1402 154 9 136 chr12 69271705 69271859 -74514596 + AluJo SINE Alu 116 288 -24 2684 137 55 8 chr12 69272023 69272512 -74513943 - L1MB7 LINE L1 -90 6094 5582 403 280 100 13 chr12 69273325 69273475 -74512980 + MIR SINE MIR 21 183 -79 1921 161 3 7 chr12 69273903 69274213 -74512242 + AluJb SINE Alu 2 310 -2 298 94 0 19 chr12 69275150 69275203 -74511252 + (CA)n Simple_repeat Simple_repeat 2 53 0 2299 104 7 0 chr12 69275335 69275632 -74510823 - AluSx SINE Alu -13 299 1 2045 94 36 0 chr12 69276512 69276787 -74509668 - AluSq SINE Alu -28 285 1 1950 125 0 31 chr12 69276817 69277129 -74509326 + AluSx SINE Alu 3 305 0 2321 87 13 0 chr12 69278007 69278307 -74508148 + AluSp SINE Alu 1 304 -9 1485 319 64 61 chr12 69278779 69279065 -74507390 - MERVL LTR ERVL -2085 3400 3116 5628 183 98 83 chr12 69279065 69279189 -74507266 + MER45R DNA AcHobo 1 122 -1459 2094 96 10 42 chr12 69279189 69279501 -74506954 + AluSc SINE Alu 1 302 -7 5628 183 98 83 chr12 69279501 69280379 -74506076 + MER45R DNA AcHobo 122 986 -595 2130 111 0 42 chr12 69280379 69280513 -74505942 + AluSg SINE Alu 1 139 -171 2271 82 0 36 chr12 69280513 69280817 -74505638 + AluSg1 SINE Alu 1 293 -16 2130 111 0 42 chr12 69280817 69280988 -74505467 + AluSg SINE Alu 139 293 -17 5628 183 98 83 chr12 69280988 69281033 -74505422 + MER45R DNA AcHobo 986 1029 -552 1780 179 0 3 chr12 69281033 69281324 -74505131 - AluJb SINE Alu -22 290 1 5628 183 98 83 chr12 69281324 69281561 -74504894 + MER45R DNA AcHobo 1029 1261 -320 1709 187 0 7 chr12 69281561 69281855 -74504600 + AluJo SINE Alu 1 292 -20 5628 183 98 83 chr12 69281855 69282125 -74504330 + MER45R DNA AcHobo 1261 1581 0 1485 319 64 61 chr12 69282125 69282886 -74503569 - MERVL LTR ERVL -2369 3116 2350 3788 190 29 14 chr12 69282909 69283797 -74502658 - L1MEc LINE L1 -2909 3306 2405 1702 297 86 44 chr12 69283782 69284175 -74502280 - L1MEc LINE L1 -4948 1448 1073 * 1864 135 0 51 chr12 69284175 69284486 -74501969 - AluJb SINE Alu -17 295 1 1702 297 86 44 chr12 69284486 69284679 -74501776 - L1MEc LINE L1 -5323 1073 890 2367 65 19 13 chr12 69284679 69284988 -74501467 - AluY SINE Alu 0 311 1 1702 297 86 44 chr12 69284988 69285775 -74500680 - L1MEc LINE L1 -5506 890 16 2223 94 3 66 chr12 69286265 69286584 -74499871 + AluSx SINE Alu 1 299 -13 2221 192 199 33 chr12 69286585 69286719 -74499736 + MER69 DNA AcHobo 1614 1724 -802 656 93 21 0 chr12 69286719 69286816 -74499639 + L1MA9 LINE L1 6212 6310 -2 2221 192 199 33 chr12 69286816 69286954 -74499501 + MER69 DNA AcHobo 1724 1838 -688 1942 103 77 0 chr12 69286954 69287226 -74499229 + AluSx SINE Alu 16 308 -4 2221 192 199 33 chr12 69287226 69287735 -74498720 + MER69 DNA AcHobo 1838 2526 0 533 281 173 33 chr12 69287754 69288285 -74498170 + L2 LINE L2 2627 3245 -68 4181 94 3 23 chr12 69288289 69288854 -74497601 - MER41A LTR ERV1 0 554 1 390 146 48 68 chr12 69289221 69289324 -74497131 + U13 snRNA snRNA 1 101 -3 2040 74 63 3 chr12 69289619 69289903 -74496552 - AluSx SINE Alu -7 305 5 2513 58 0 6 chr12 69291572 69291883 -74494572 + AluSc SINE Alu 1 309 0 252 217 330 0 chr12 69292081 69292187 -74494268 - MIR3 SINE MIR -2 206 66 464 247 6 72 chr12 69292344 69292510 -74493945 - MER112 DNA MER1_type 0 260 106 1717 145 3 77 chr12 69293010 69293321 -74493134 - AluJb SINE Alu -24 288 1 289 332 117 22 chr12 69293501 69293724 -74492731 - MIR SINE MIR -18 244 1 2203 97 35 0 chr12 69294228 69294516 -74491939 + AluSg SINE Alu 1 298 -12 2184 102 0 0 chr12 69294601 69294884 -74491571 - AluSx SINE Alu -14 298 16 1963 159 0 3 chr12 69295287 69295588 -74490867 - AluJo SINE Alu -12 300 1 996 252 93 50 chr12 69295588 69296077 -74490378 + L2 LINE L2 2775 3297 -16 842 237 51 5 chr12 69297987 69298202 -74488253 + MIR SINE MIR 3 227 -35 258 105 0 0 chr12 69298205 69298243 -74488212 + (T)n Simple_repeat Simple_repeat 1 38 0 1848 110 0 4 chr12 69298244 69298490 -74487965 - AluSq SINE Alu -68 245 1 21 36 0 0 chr12 69298892 69298920 -74487535 + AT_rich Low_complexity Low_complexity 1 28 0 803 157 0 71 chr12 69298988 69299128 -74487327 - FLAM_C SINE Alu -12 131 2 1674 166 23 29 chr12 69299266 69299573 -74486882 - AluJo SINE Alu -7 305 1 831 162 15 15 chr12 69299709 69299845 -74486610 + AluJo SINE Alu 10 145 -167 2180 108 0 3 chr12 69299847 69300134 -74486321 + AluSq SINE Alu 1 286 -27 2201 113 0 0 chr12 69300400 69300691 -74485764 + AluSx SINE Alu 1 291 -21 2070 100 0 21 chr12 69300736 69301017 -74485438 + AluSx SINE Alu 22 296 -16 1306 112 0 0 chr12 69301018 69301188 -74485267 + AluSg/x SINE Alu 126 295 -17 265 108 0 0 chr12 69301188 69301225 -74485230 + MER45R DNA AcHobo 1012 1048 -533 1780 179 0 3 chr12 69301233 69301524 -74484931 - AluJb SINE Alu -22 290 1 2091 161 112 40 chr12 69301525 69301762 -74484693 + MER45R DNA AcHobo 1035 1253 -328 1701 188 0 7 chr12 69301762 69302055 -74484400 + AluJo SINE Alu 2 292 -20 2091 161 112 40 chr12 69302055 69302315 -74484140 + MER45R DNA AcHobo 1253 1568 -13 1736 167 0 31 chr12 69302709 69302919 -74483536 - AluJb SINE Alu -28 284 84 2335 54 7 0 chr12 69302919 69303197 -74483258 - AluY SINE Alu -22 289 10 1736 167 0 31 chr12 69303197 69303279 -74483176 - AluJb SINE Alu -228 84 1 1347 60 12 12 chr12 69304075 69304243 -74482212 - L1PA8 LINE L1 0 6172 6005 866 92 0 0 chr12 69304998 69305107 -74481348 + AluSq/x SINE Alu 1 109 -203 937 214 46 0 chr12 69305515 69305711 -74480744 - MIR SINE MIR -43 219 15 186 143 0 0 chr12 69307237 69307272 -74479183 + (A)n Simple_repeat Simple_repeat 1 35 0 387 274 109 127 chr12 69307738 69308418 -74478037 + L1M2 LINE L1 536 1203 -5646 704 238 28 22 chr12 69309030 69309211 -74477244 - MIR SINE MIR 0 262 81 1021 261 13 62 chr12 69310055 69310133 -74476322 + L2 LINE L2 2960 3040 -273 2001 86 116 4 chr12 69310133 69310401 -74476054 + AluSc SINE Alu 2 299 0 1021 261 13 62 chr12 69310401 69310694 -74475761 + L2 LINE L2 3040 3313 0 1869 147 0 7 chr12 69310894 69311173 -74475282 + AluSx SINE Alu 1 277 -35 19062 182 18 15 chr12 69311173 69313817 -74472638 - L1PA12 LINE L1 -1481 6103 3469 207 88 0 0 chr12 69313817 69313851 -74472604 + (TA)n Simple_repeat Simple_repeat 2 35 0 2163 129 0 0 chr12 69313851 69314145 -74472310 - AluSx SINE Alu -18 294 1 19062 182 18 15 chr12 69314145 69315857 -74470598 - L1PA12 LINE L1 -4114 3470 912 438 119 0 0 chr12 69316137 69316196 -74470259 - FLAM SINE Alu -14 129 71 2320 98 0 0 chr12 69316228 69316524 -74469931 + AluSg SINE Alu 1 296 -14 527 249 21 80 chr12 69316529 69316697 -74469758 - HERV16 LTR ERVL -1166 3830 3678 2295 73 63 0 chr12 69316697 69316983 -74469472 - AluSp SINE Alu -9 304 1 527 249 21 80 chr12 69316983 69317051 -74469404 - HERV16 LTR ERVL -1318 3678 3608 2122 136 0 3 chr12 69317784 69318094 -74468361 + AluSc SINE Alu 1 309 0 198 0 0 0 chr12 69319425 69319447 -74467008 + (A)n Simple_repeat Simple_repeat 1 22 0 444 182 7 7 chr12 69320359 69320510 -74465945 + GA-rich Low_complexity Low_complexity 1 151 0 226 317 32 21 chr12 69321905 69322091 -74464364 + L2 LINE L2 1812 1999 -1315 350 269 69 61 chr12 69322161 69322540 -74463915 + L2 LINE L2 2544 3058 -214 1854 151 0 53 chr12 69322775 69323093 -74463362 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 69323343 69323363 -74463092 + (A)n Simple_repeat Simple_repeat 1 20 0 964 110 0 48 chr12 69323631 69323777 -74462678 + AluJo SINE Alu 1 139 -173 214 354 108 15 chr12 69324079 69324209 -74462246 - MIR3 SINE MIR -36 172 31 241 234 0 39 chr12 69324765 69324842 -74461613 + C-rich Low_complexity Low_complexity 1 74 0 2269 106 0 28 chr12 69325346 69325668 -74460787 + AluSq SINE Alu 1 313 0 1642 163 14 41 chr12 69325724 69326019 -74460436 + AluJo SINE Alu 1 287 -25 2249 113 0 19 chr12 69326023 69326341 -74460114 + AluSx SINE Alu 1 312 0 2477 57 0 10 chr12 69326419 69326719 -74459736 + AluY SINE Alu 1 297 -14 234 0 0 0 chr12 69327261 69327287 -74459168 + (CA)n Simple_repeat Simple_repeat 2 27 0 682 121 0 0 chr12 69328926 69329063 -74457392 + AluSg/x SINE Alu 191 327 0 2063 125 0 32 chr12 69329206 69329519 -74456936 + AluSx SINE Alu 1 303 -9 908 172 131 5 chr12 69329519 69329717 -74456738 - L1MB3 LINE L1 -154 6029 5807 697 151 128 12 chr12 69330062 69330234 -74456221 - L1MB8 LINE L1 0 6178 5987 2291 120 0 0 chr12 69330480 69330781 -74455674 - AluSx SINE Alu -11 301 1 813 137 7 50 chr12 69330913 69331052 -74455403 + FLAM_C SINE Alu 1 133 0 388 145 0 16 chr12 69331608 69331724 -74454731 - AluY SINE Alu 0 333 219 313 262 56 0 chr12 69332524 69332631 -74453824 + GA-rich Low_complexity Low_complexity 1 113 0 214 354 108 15 chr12 69333188 69333318 -74453137 + MIR3 SINE MIR 31 172 -36 932 116 0 48 chr12 69333619 69333765 -74452690 - AluJo SINE Alu -173 139 1 1275 295 72 57 chr12 69333768 69333962 -74452493 - L1MEc LINE L1 -5382 1014 824 2397 65 19 13 chr12 69333962 69334271 -74452184 - AluY SINE Alu 0 311 1 1275 295 72 57 chr12 69334271 69335061 -74451394 - L1MEc LINE L1 -5572 824 15 2240 94 3 66 chr12 69335552 69335871 -74450584 + AluSx SINE Alu 1 299 -13 2142 189 204 35 chr12 69335872 69336006 -74450449 + MER69 DNA AcHobo 1614 1724 -802 635 101 20 0 chr12 69336006 69336105 -74450350 + L1MA9 LINE L1 6212 6312 0 2142 189 204 35 chr12 69336105 69336241 -74450214 + MER69 DNA AcHobo 1724 1836 -690 1887 93 85 0 chr12 69336241 69336514 -74449941 + AluSx SINE Alu 16 309 0 2142 189 204 35 chr12 69336514 69337022 -74449433 + MER69 DNA AcHobo 1836 2526 0 424 278 182 36 chr12 69337041 69337572 -74448883 + L2 LINE L2 2627 3245 -68 3990 92 3 23 chr12 69337576 69338141 -74448314 - MER41A LTR ERV1 0 554 1 358 146 48 68 chr12 69338508 69338611 -74447844 + U13 snRNA snRNA 1 101 -3 2062 74 63 3 chr12 69338907 69339191 -74447264 - AluSx SINE Alu -7 305 5 2496 62 0 7 chr12 69340860 69341168 -74445287 + AluSc SINE Alu 1 306 -3 217 217 330 0 chr12 69341364 69341470 -74444985 - MIR3 SINE MIR -2 206 66 457 247 6 72 chr12 69341627 69341793 -74444662 - MER112 DNA MER1_type 0 260 106 291 287 50 0 chr12 69342414 69342515 -74443940 - L1M4 LINE L1 -1492 4654 4549 2427 84 0 0 chr12 69342560 69342869 -74443586 - AluY SINE Alu -1 310 2 451 191 316 0 chr12 69343047 69343183 -74443272 - MER3 DNA MER1_type -23 186 8 1054 206 69 0 chr12 69343188 69343392 -74443063 + MER58A DNA MER1_type 6 223 -1 711 236 61 0 chr12 69343400 69343565 -74442890 - MER5B DNA MER1_type -3 175 1 2163 121 0 10 chr12 69343704 69344009 -74442446 - AluSx SINE Alu -10 302 1 197 306 97 8 chr12 69344094 69344218 -74442237 + MIR SINE MIR 2 136 -126 262 128 0 24 chr12 69344221 69344267 -74442188 - FLAM SINE Alu -8 125 86 1239 183 5 22 chr12 69344267 69344491 -74441964 - AluJo SINE Alu -92 220 1 364 278 26 9 chr12 69344502 69344617 -74441838 + MIR SINE MIR 136 252 -10 2394 80 20 0 chr12 69344620 69344919 -74441536 - AluSq SINE Alu -8 305 1 1958 160 0 3 chr12 69345177 69345490 -74440965 - AluSx SINE Alu 0 312 1 2284 96 7 3 chr12 69346165 69346466 -74439989 - AluSq SINE Alu -11 302 1 387 202 75 0 chr12 69347800 69347894 -74438561 - L2 LINE L2 -4 3268 3168 2154 109 0 3 chr12 69348065 69348348 -74438107 - AluSg SINE Alu -28 282 1 852 199 0 0 chr12 69348585 69348736 -74437719 - FAM SINE Alu 0 49 1 2310 90 3 7 chr12 69348818 69349118 -74437337 - AluSg SINE Alu -11 299 1 198 0 0 0 chr12 69349118 69349140 -74437315 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 965 125 128 116 chr12 69349277 69349597 -74436858 + MER33 DNA MER1_type 1 324 0 2194 110 3 7 chr12 69350192 69350493 -74435962 + AluSg SINE Alu 2 301 -9 351 0 0 0 chr12 69350508 69350547 -74435908 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 271 146 31 chr12 69350557 69350653 -74435802 - L2 LINE L2 -4 3309 3203 1916 164 27 14 chr12 69350669 69351036 -74435419 - L1MB2 LINE L1 -224 5947 5576 269 295 49 16 chr12 69351137 69351320 -74435135 - L1ME LINE L1 -359 5762 5574 2323 90 7 10 chr12 69351443 69351744 -74434711 - AluSq SINE Alu -12 301 2 234 143 0 61 chr12 69351792 69351841 -74434614 - L1P LINE L1 -786 5365 5320 1981 116 35 14 chr12 69351997 69352281 -74434174 - AluSp SINE Alu -23 290 1 1913 112 16 43 chr12 69352566 69352871 -74433584 - AluSg SINE Alu -13 297 1 639 75 0 0 chr12 69353030 69353110 -74433345 + MADE1 DNA Mariner 1 80 0 2370 110 0 0 chr12 69353321 69353630 -74432825 - AluSx SINE Alu -3 309 1 2018 142 0 19 chr12 69354148 69354458 -74431997 - AluSx SINE Alu -8 304 1 1047 122 32 0 chr12 69354938 69355135 -74431320 + AluSg/x SINE Alu 119 320 0 2420 42 42 0 chr12 69355174 69355461 -74430994 + AluY SINE Alu 1 299 -12 1991 156 0 3 chr12 69355673 69355975 -74430480 + AluJb SINE Alu 1 301 -11 2259 94 0 0 chr12 69355975 69356261 -74430194 + AluSc SINE Alu 22 307 -2 547 265 115 5 chr12 69356262 69356462 -74429993 + MIR SINE MIR 40 261 -1 2327 104 3 0 chr12 69356982 69357280 -74429175 - AluSg SINE Alu -11 299 1 934 159 177 90 chr12 69357361 69357493 -74428962 - AluJo SINE Alu -1 301 182 2395 91 3 10 chr12 69357493 69357801 -74428654 - AluSc SINE Alu -3 306 1 934 159 177 90 chr12 69357801 69357945 -74428510 - AluJo SINE Alu -120 182 1 2427 74 7 0 chr12 69357966 69358264 -74428191 - AluY SINE Alu -11 300 1 1589 142 35 8 chr12 69358280 69358540 -74427915 - AluJb SINE Alu -25 287 21 1635 187 3 29 chr12 69358778 69359094 -74427361 - AluJo SINE Alu -4 308 1 478 173 79 31 chr12 69359800 69359927 -74426528 - AluJb SINE Alu -179 133 1 2526 32 13 29 chr12 69360049 69360357 -74426098 - AluY SINE Alu -8 303 1 1643 199 28 0 chr12 69360620 69360907 -74425548 - AluJo SINE Alu -17 295 1 315 256 83 45 chr12 69361156 69361289 -74425166 + MIR3 SINE MIR 45 182 -26 2457 82 7 0 chr12 69361726 69362031 -74424424 + AluSx SINE Alu 1 307 -5 304 262 39 10 chr12 69362133 69362236 -74424219 - L2 LINE L2 -6 3266 3161 288 210 25 12 chr12 69363140 69363221 -74423234 + L1MC4 LINE L1 7961 8042 0 2088 109 14 0 chr12 69363279 69363555 -74422900 + AluSg SINE Alu 1 280 -30 527 189 8 45 chr12 69363647 69363779 -74422676 + MIR SINE MIR 28 154 -108 278 255 132 19 chr12 69363814 69363920 -74422535 - L2 LINE L2 -6 3266 3149 207 0 0 0 chr12 69363973 69363996 -74422459 + (T)n Simple_repeat Simple_repeat 1 23 0 1807 155 17 3 chr12 69365110 69365400 -74421055 + AluJb SINE Alu 1 294 -18 2394 63 0 27 chr12 69365411 69365711 -74420744 + AluY SINE Alu 1 292 -19 742 184 22 0 chr12 69366461 69366597 -74419858 + AluSg/x SINE Alu 158 296 -14 1461 219 10 0 chr12 69366702 69366994 -74419461 + AluSx SINE Alu 1 295 -17 268 292 242 6 chr12 69367420 69367581 -74418874 + MIR SINE MIR 18 216 -46 2194 119 3 3 chr12 69369406 69369709 -74416746 - AluSx SINE Alu -9 303 1 224 311 60 33 chr12 69369977 69370128 -74416327 - MIR SINE MIR -24 238 84 1430 184 20 49 chr12 69370658 69370878 -74415577 - AluJb SINE Alu -16 296 86 2224 122 3 0 chr12 69370878 69371181 -74415274 - AluSq SINE Alu -9 304 1 1430 184 20 49 chr12 69371181 69371265 -74415190 - AluJb SINE Alu -226 86 1 2322 115 0 0 chr12 69371430 69371734 -74414721 - AluSx SINE Alu -8 304 1 352 304 103 0 chr12 69372095 69372279 -74414176 + L1ME4a LINE L1 5836 6038 -83 30 45 0 0 chr12 69372304 69372348 -74414107 + AT_rich Low_complexity Low_complexity 1 44 0 578 176 88 32 chr12 69372373 69372498 -74413957 - FLAM_C SINE Alu 0 133 2 718 145 34 0 chr12 69372695 69372812 -74413643 + AluJb SINE Alu 171 291 -21 2165 117 0 13 chr12 69373545 69373844 -74412611 + AluSx SINE Alu 1 295 -17 727 291 4 25 chr12 69374034 69374271 -74412184 + MIR SINE MIR 31 262 0 2329 211 92 43 chr12 69374685 69375359 -74411096 + L1ME3 LINE L1 5455 6161 -1 40 21 0 0 chr12 69375539 69375586 -74410869 + AT_rich Low_complexity Low_complexity 1 47 0 596 119 0 0 chr12 69375588 69375672 -74410783 - FLAM_C SINE Alu -25 118 35 257 234 93 19 chr12 69375742 69375849 -74410606 + MIR SINE MIR 104 218 -44 899 130 84 32 chr12 69376052 69376206 -74410249 - AluJb SINE Alu -46 266 105 279 0 0 0 chr12 69376378 69376409 -74410046 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1821 152 14 4 chr12 69376416 69376693 -74409762 - AluJb SINE Alu -30 282 3 907 182 11 23 chr12 69377544 69377720 -74408735 - FAM SINE Alu -1 174 1 348 296 91 25 chr12 69377797 69377943 -74408512 - MIR SINE MIR 0 262 92 1931 125 35 35 chr12 69377943 69378255 -74408200 + AluSx SINE Alu 1 312 0 348 296 91 25 chr12 69378255 69378351 -74408104 - MIR SINE MIR -170 92 4 2472 91 0 0 chr12 69378521 69378830 -74407625 - AluSx SINE Alu -3 309 1 1563 139 0 0 chr12 69379202 69379425 -74407030 - AluJb SINE Alu -17 295 73 2360 54 7 0 chr12 69379425 69379701 -74406754 - AluY SINE Alu -22 289 10 594 136 0 0 chr12 69379701 69379782 -74406673 - AluS SINE Alu -231 82 2 1911 140 4 0 chr12 69380518 69380797 -74405658 + AluJb SINE Alu 22 301 -11 2182 99 3 3 chr12 69381309 69381627 -74404828 + AluSp SINE Alu 1 318 0 1691 181 13 3 chr12 69381656 69381954 -74404501 + AluJb SINE Alu 1 301 -11 219 36 0 0 chr12 69382002 69382030 -74404425 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 279 161 0 0 chr12 69382025 69382081 -74404374 + CT-rich Low_complexity Low_complexity 2 57 0 319 253 44 37 chr12 69382910 69383061 -74403394 - MIR SINE MIR -61 147 42 2516 33 13 29 chr12 69383452 69383759 -74402696 - AluY SINE Alu -9 302 1 1643 199 28 0 chr12 69384022 69384309 -74402146 - AluJo SINE Alu -17 295 1 315 256 83 45 chr12 69384558 69384691 -74401764 + MIR3 SINE MIR 45 182 -26 2417 88 7 0 chr12 69385128 69385433 -74401022 + AluSx SINE Alu 1 307 -5 304 262 39 10 chr12 69385535 69385638 -74400817 - L2 LINE L2 -6 3266 3161 288 210 25 12 chr12 69386542 69386623 -74399832 + L1MC4 LINE L1 7961 8042 0 2088 109 14 0 chr12 69386681 69386957 -74399498 + AluSg SINE Alu 1 280 -30 537 201 55 49 chr12 69387049 69387213 -74399242 + MIR SINE MIR 28 192 -70 278 255 132 19 chr12 69387216 69387322 -74399133 - L2 LINE L2 -6 3266 3149 871 151 7 0 chr12 69388467 69388606 -74397849 + FLAM_C SINE Alu 3 142 -1 457 265 121 0 chr12 69388724 69388856 -74397599 + MER3 DNA MER1_type 1 148 -61 2018 136 3 0 chr12 69388972 69389267 -74397188 + AluJo SINE Alu 1 296 -16 2186 125 10 0 chr12 69389269 69389572 -74396883 + AluSx SINE Alu 1 306 -6 2120 86 53 40 chr12 69389572 69389873 -74396582 + AluSp SINE Alu 1 306 -7 375 203 0 0 chr12 69390520 69390589 -74395866 - MER103 DNA DNA -45 121 53 1016 113 0 0 chr12 69390590 69390723 -74395732 + AluJb SINE Alu 1 133 -179 958 187 0 0 chr12 69391447 69391613 -74394842 - AluSg/x SINE Alu -18 292 127 1396 178 52 28 chr12 69393223 69393509 -74392946 + AluJo SINE Alu 1 293 -19 2248 125 0 0 chr12 69393514 69393825 -74392630 + AluSx SINE Alu 1 311 -1 905 72 158 0 chr12 69393826 69393978 -74392477 + L1MA3 LINE L1 6130 6305 0 409 281 64 12 chr12 69394984 69395155 -74391300 - MIR SINE MIR -36 226 47 198 0 0 0 chr12 69396127 69396149 -74390306 + (T)n Simple_repeat Simple_repeat 1 22 0 2376 62 42 0 chr12 69397070 69397358 -74389097 + AluY SINE Alu 1 300 -11 1597 187 23 19 chr12 69397466 69397776 -74388679 + AluJb SINE Alu 1 311 -1 1176 120 6 6 chr12 69398541 69398716 -74387739 + AluSg/x SINE Alu 128 302 -8 313 245 53 21 chr12 69399193 69399287 -74387168 - L2 LINE L2 -7 3306 3210 183 310 86 9 chr12 69399994 69400110 -74386345 + MIR SINE MIR 103 227 -35 2135 178 110 7 chr12 69400144 69400554 -74385901 - MER66A LTR ERV1 0 478 27 403 114 0 29 chr12 69401532 69401602 -74384853 + AluS SINE Alu 2 69 -249 198 0 0 0 chr12 69402177 69402199 -74384256 + (A)n Simple_repeat Simple_repeat 1 22 0 2076 108 57 0 chr12 69402234 69402513 -74383942 + AluSx SINE Alu 1 295 -17 239 148 204 0 chr12 69403046 69403100 -74383355 - MIR SINE MIR -2 260 196 633 152 0 0 chr12 69403445 69403544 -74382911 - AluJb SINE Alu -4 308 210 1990 155 0 7 chr12 69403593 69403902 -74382553 - AluJb SINE Alu -4 308 2 340 320 0 16 chr12 69403916 69404041 -74382414 + L2 LINE L2 3138 3260 -12 2145 136 7 0 chr12 69404059 69404368 -74382087 + AluSx SINE Alu 1 311 -1 547 174 0 41 chr12 69404375 69404473 -74381982 - FLAM_A SINE Alu -26 116 23 1682 139 90 0 chr12 69404548 69404815 -74381640 - AluJo SINE Alu -21 291 1 683 140 0 0 chr12 69405826 69405926 -74380529 + AluJb SINE Alu 5 104 -208 228 175 0 35 chr12 69405930 69405987 -74380468 + LTR66 LTR ERVL 384 438 -172 252 182 0 0 chr12 69406001 69406056 -74380399 - MER4-int LTR ERV1 -5433 1165 1111 288 0 0 0 chr12 69406056 69406088 -74380367 + (CA)n Simple_repeat Simple_repeat 2 33 0 2176 114 0 0 chr12 69406093 69406373 -74380082 - AluSx SINE Alu -31 281 2 1850 130 4 19 chr12 69406982 69407252 -74379203 - AluJo SINE Alu -45 267 2 1544 169 4 0 chr12 69407286 69407517 -74378938 - AluSx SINE Alu -77 235 4 1466 137 119 47 chr12 69407973 69408250 -74378205 - AluJb SINE Alu -15 297 1 818 166 25 0 chr12 69408579 69408736 -74377719 - L1MB3 LINE L1 0 6183 6023 1915 121 23 39 chr12 69408736 69409041 -74377414 + AluSx SINE Alu 2 301 -11 1420 181 76 11 chr12 69409348 69409625 -74376830 + AluJb SINE Alu 1 295 -17 1738 178 22 97 chr12 69409640 69409811 -74376644 + MLT1B LTR MaLR 11 193 -197 1656 173 0 49 chr12 69409811 69410117 -74376338 + AluJb SINE Alu 1 291 -21 1738 178 22 97 chr12 69410117 69410356 -74376099 + MLT1B LTR MaLR 193 390 0 352 145 145 0 chr12 69410683 69410752 -74375703 + FLAM_A SINE Alu 20 98 -35 408 330 0 26 chr12 69410968 69411238 -74375217 + C-rich Low_complexity Low_complexity 1 262 0 351 343 11 28 chr12 69411223 69411404 -74375051 + CT-rich Low_complexity Low_complexity 1 178 0 * 363 300 17 17 chr12 69411287 69411407 -74375048 + C-rich Low_complexity Low_complexity 1 120 0 494 298 40 13 chr12 69411607 69411758 -74374697 - L1MB3 LINE L1 -2193 5615 5461 1517 171 99 0 chr12 69411759 69411922 -74374533 - AluJo SINE Alu -17 295 95 221 0 0 33 chr12 69411922 69411952 -74374503 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1517 171 99 0 chr12 69411952 69412051 -74374404 - AluJo SINE Alu -217 95 7 328 160 80 60 chr12 69412184 69412284 -74374171 - L1ME1 LINE L1 -11 6155 6054 1875 152 14 7 chr12 69412346 69412635 -74373820 - AluSx SINE Alu -21 291 1 1991 101 0 0 chr12 69412896 69413153 -74373302 + AluSx SINE Alu 50 306 -6 2059 147 0 3 chr12 69413168 69413461 -74372994 + AluJo SINE Alu 1 292 -20 25 31 0 0 chr12 69413587 69413619 -74372836 + AT_rich Low_complexity Low_complexity 1 32 0 727 191 25 32 chr12 69413722 69413879 -74372576 + MER34C LTR ERV1 40 195 -390 618 179 0 68 chr12 69413912 69414029 -74372426 - FLAM_A SINE Alu -33 109 1 323 220 34 0 chr12 69414030 69414089 -74372366 + MER34C LTR ERV1 188 248 -337 293 107 0 18 chr12 69414090 69414146 -74372309 + (CA)n Simple_repeat Simple_repeat 2 56 0 2328 96 7 0 chr12 69414182 69414485 -74371970 - AluSx SINE Alu -7 305 1 367 208 136 52 chr12 69414630 69414784 -74371671 + MER34 LTR ERV1 376 542 0 4394 111 30 2 chr12 69414850 69415482 -74370973 + MER39B LTR ERV1 1 650 -3 721 126 36 0 chr12 69415481 69415592 -74370863 - MSTB1 LTR MaLR 0 432 318 1939 85 4 0 chr12 69415857 69416093 -74370362 - AluSp SINE Alu -23 290 54 643 133 0 0 chr12 69416093 69416183 -74370272 - AluS SINE Alu -222 91 2 2060 136 0 0 chr12 69416240 69416548 -74369907 - AluSg SINE Alu -2 308 1 2125 117 3 0 chr12 69416567 69416874 -74369581 - AluSx SINE Alu -4 308 1 2237 87 3 3 chr12 69416974 69417274 -74369181 + AluSg SINE Alu 1 300 -10 1785 114 0 129 chr12 69417276 69417626 -74368829 + AluSx SINE Alu 1 305 -7 599 275 55 43 chr12 69417649 69417910 -74368545 - MIR SINE MIR -1 261 3 1531 199 24 3 chr12 69418090 69418382 -74368073 - AluJb SINE Alu -14 298 1 2193 103 3 0 chr12 69419742 69420044 -74366411 - AluSq SINE Alu -10 303 1 1457 187 61 7 chr12 69420312 69420590 -74365865 - AluJo SINE Alu -8 294 2 214 333 0 43 chr12 69420599 69420692 -74365763 + MER5A DNA MER1_type 63 151 -38 1749 134 3 11 chr12 69420979 69421303 -74365152 - AluSx SINE Alu 0 322 1 990 115 0 0 chr12 69421319 69421458 -74364997 + AluSg/x SINE Alu 166 304 -8 313 366 16 0 chr12 69421461 69421584 -74364871 - L1MCa LINE L1 -4324 2102 1978 2263 77 3 10 chr12 69421850 69422150 -74364305 - AluY SINE Alu -13 298 1 2086 114 0 10 chr12 69422152 69422451 -74364004 - AluSx SINE Alu -16 296 1 1528 163 14 41 chr12 69422455 69422750 -74363705 - AluJo SINE Alu -25 287 1 2143 106 0 28 chr12 69422806 69423128 -74363327 - AluSq SINE Alu 0 313 1 241 234 0 39 chr12 69423632 69423709 -74362746 + G-rich Low_complexity Low_complexity 1 74 0 254 309 100 34 chr12 69424265 69424431 -74362024 + MIR3 SINE MIR 31 205 -36 903 110 0 48 chr12 69424697 69424843 -74361612 - AluJo SINE Alu -173 139 1 180 0 0 0 chr12 69425111 69425131 -74361324 + (T)n Simple_repeat Simple_repeat 1 20 0 1731 151 0 53 chr12 69425381 69425699 -74360756 - AluJb SINE Alu -11 301 1 416 269 69 61 chr12 69425934 69426313 -74360142 - L2 LINE L2 -214 3058 2544 284 317 32 21 chr12 69426383 69426569 -74359886 - L2 LINE L2 -1315 1999 1812 246 291 7 7 chr12 69427965 69428045 -74358410 + CT-rich Low_complexity Low_complexity 1 80 0 189 0 0 0 chr12 69428053 69428074 -74358381 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 1203 188 175 0 chr12 69428190 69428430 -74358025 + AluJb SINE Alu 2 283 -19 288 0 0 0 chr12 69428438 69428470 -74357985 + (CA)n Simple_repeat Simple_repeat 1 32 0 830 111 8 8 chr12 69428565 69428682 -74357773 + AluJb SINE Alu 1 117 -195 2170 85 10 3 chr12 69428799 69429092 -74357363 - AluSq SINE Alu -18 295 1 2028 111 10 0 chr12 69430191 69430480 -74355975 - AluSq SINE Alu -21 292 1 734 243 65 0 chr12 69431212 69431381 -74355074 - MER58A DNA MER1_type -2 222 43 661 211 15 8 chr12 69431508 69431641 -74354814 + AluJo SINE Alu 2 135 -177 1585 181 102 61 chr12 69431700 69431926 -74354529 - LTR40c LTR ERVL -5 460 245 1860 126 4 0 chr12 69431926 69432188 -74354267 - AluSx SINE Alu -49 263 1 1585 181 102 61 chr12 69432188 69432319 -74354136 - LTR40c LTR ERVL -220 245 79 1486 122 0 0 chr12 69432319 69432524 -74353931 + AluSq SINE Alu 86 290 -23 1585 181 102 61 chr12 69432524 69432607 -74353848 - LTR40c LTR ERVL -386 79 1 1704 172 3 0 chr12 69433235 69433532 -74352923 - AluJb SINE Alu -14 298 1 2480 59 0 0 chr12 69433743 69434049 -74352406 - AluSg SINE Alu -4 306 1 2369 176 58 43 chr12 69434645 69435104 -74351351 + MLT1F LTR MaLR 1 471 -71 2155 95 13 0 chr12 69435104 69435408 -74351047 - AluSp SINE Alu -5 308 1 2369 176 58 43 chr12 69435408 69435482 -74350973 + MLT1F LTR MaLR 471 542 0 266 86 328 17 chr12 69435535 69435593 -74350862 - MADE1 DNA Mariner 0 80 5 2344 87 0 3 chr12 69435712 69436023 -74350432 + AluSq SINE Alu 1 310 -3 1568 157 32 18 chr12 69436366 69436647 -74349808 - AluJb SINE Alu -27 285 1 686 139 177 70 chr12 69436651 69436809 -74349646 - FRAM SINE Alu -9 167 1 395 208 58 117 chr12 69436825 69436979 -74349476 + LTR45B LTR ERV1 330 474 -15 2258 73 0 10 chr12 69438291 69438603 -74347852 - AluSq SINE Alu 0 309 1 270 174 29 72 chr12 69438815 69438884 -74347571 - MIR SINE MIR -73 189 124 1491 106 138 0 chr12 69438943 69439189 -74347266 - AluSx SINE Alu -32 280 1 269 57 0 0 chr12 69439282 69439317 -74347138 + MADE1 DNA Mariner 2 36 -44 215 234 16 0 chr12 69439437 69439501 -74346954 + L2 LINE L2 2994 3058 -214 2271 82 7 3 chr12 69439681 69439984 -74346471 + AluSp SINE Alu 1 304 -9 683 287 178 18 chr12 69439991 69440447 -74346008 - MLT1L LTR MaLR -68 547 19 502 276 11 63 chr12 69440479 69440653 -74345802 - MIR SINE MIR -30 232 68 1880 98 0 0 chr12 69440653 69440907 -74345548 + AluSx SINE Alu 46 299 -13 1857 133 20 17 chr12 69441072 69441366 -74345089 + AluJb SINE Alu 1 295 -17 243 0 0 0 chr12 69441433 69441460 -74344995 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1847 128 0 17 chr12 69441462 69441750 -74344705 - AluSx SINE Alu -29 283 1 1644 165 6 44 chr12 69441828 69442144 -74344311 - AluJo SINE Alu -8 304 1 495 176 12 0 chr12 69442169 69442254 -74344201 - FLAM_A SINE Alu -17 125 40 1715 104 86 4 chr12 69442395 69442673 -74343782 - AluSq SINE Alu -12 301 1 239 282 122 39 chr12 69442943 69443099 -74343356 + MIR SINE MIR 33 201 -61 273 215 47 65 chr12 69443362 69443469 -74342986 + MIR SINE MIR 110 214 -48 272 222 7 56 chr12 69444419 69444563 -74341892 + (CGGGG)n Simple_repeat Simple_repeat 2 138 0 25 90 0 0 chr12 69444627 69444694 -74341761 + GC_rich Low_complexity Low_complexity 1 67 0 2080 114 17 0 chr12 69446551 69446850 -74339605 - AluSx SINE Alu -7 305 2 1896 136 3 0 chr12 69447513 69447808 -74338647 + AluJo SINE Alu 1 296 -16 2057 125 10 0 chr12 69447810 69448113 -74338342 + AluSx SINE Alu 1 306 -6 1729 161 0 10 chr12 69448116 69448426 -74338029 + AluSx SINE Alu 5 311 -1 229 342 26 43 chr12 69448459 69448576 -74337879 - L2 LINE L2 -4 3268 3154 2189 102 0 13 chr12 69448603 69448908 -74337547 + AluSx SINE Alu 2 302 -10 449 272 24 16 chr12 69448909 69449034 -74337421 - MIR SINE MIR -8 254 129 1198 182 0 22 chr12 69449037 69449262 -74337193 + AluJo SINE Alu 1 220 -92 277 140 0 20 chr12 69449262 69449312 -74337143 + FLAM_A SINE Alu 85 133 0 246 306 97 8 chr12 69449319 69449443 -74337012 - MIR SINE MIR -126 136 2 1909 108 65 0 chr12 69449528 69449807 -74336648 + AluSq SINE Alu 1 297 -16 2092 88 3 16 chr12 69450009 69450316 -74336139 - AluY SINE Alu -8 303 1 2132 105 0 25 chr12 69450465 69450780 -74335675 - AluSx SINE Alu -5 307 1 219 277 0 0 chr12 69450825 69450872 -74335583 - L3 LINE CR1 -1 1576 1530 381 143 0 16 chr12 69451021 69451084 -74335371 - MLT1C LTR MaLR 0 467 406 815 193 7 0 chr12 69451084 69451229 -74335226 + FRAM SINE Alu 1 146 -30 369 43 0 0 chr12 69451241 69451288 -74335167 + (CA)n Simple_repeat Simple_repeat 2 48 0 1148 178 55 65 chr12 69451291 69451660 -74334795 - MLT1C LTR MaLR -61 329 1 203 200 0 15 chr12 69451660 69451725 -74334730 + (TA)n Simple_repeat Simple_repeat 1 64 0 198 335 114 38 chr12 69451792 69451950 -74334505 - L3 LINE CR1 -25 1552 1383 1102 138 5 49 chr12 69452109 69452312 -74334143 + AluJb SINE Alu 17 210 -102 195 139 0 0 chr12 69452455 69452491 -74333964 + (T)n Simple_repeat Simple_repeat 1 36 0 1578 159 61 10 chr12 69452522 69452818 -74333637 - AluJb SINE Alu -1 311 1 2057 109 0 0 chr12 69454014 69454309 -74332146 + AluSx SINE Alu 10 304 0 186 43 0 0 chr12 69455162 69455185 -74331270 + (A)n Simple_repeat Simple_repeat 1 23 0 2290 88 0 10 chr12 69455538 69455846 -74330609 - AluSc SINE Alu -4 305 1 189 298 184 0 chr12 69455846 69455960 -74330495 + L2 LINE L2 2688 2822 -492 1891 158 0 3 chr12 69456264 69456568 -74329887 - AluJb SINE Alu -9 303 1 2119 98 3 0 chr12 69456705 69457001 -74329454 + AluSx SINE Alu 1 297 -15 809 210 0 6 chr12 69457002 69457164 -74329291 + AluSg/x SINE Alu 133 293 -19 238 289 33 22 chr12 69457245 69457302 -74329153 - MIR SINE MIR -105 157 97 2147 118 0 0 chr12 69457302 69457606 -74328849 + AluSx SINE Alu 1 304 -8 238 289 33 22 chr12 69457606 69457638 -74328817 - MIR SINE MIR -165 97 67 323 198 31 52 chr12 69457848 69457944 -74328511 - MIR SINE MIR 0 262 169 1991 95 7 36 chr12 69457994 69458298 -74328157 + AluSq SINE Alu 1 295 -18 713 162 8 8 chr12 69458416 69458533 -74327922 - AluJb SINE Alu -195 117 1 1665 138 8 0 chr12 69458650 69458911 -74327544 - AluSx SINE Alu -29 283 21 1701 150 7 4 chr12 69459131 69459411 -74327044 + AluJb SINE Alu 29 309 -3 2657 133 51 16 chr12 69459411 69459901 -74326554 + L1MA10 LINE L1 5828 6334 0 24 0 0 0 chr12 69460748 69460772 -74325683 + AT_rich Low_complexity Low_complexity 1 24 0 399 268 91 52 chr12 69460971 69461280 -74325175 + L1ME3A LINE L1 5578 5919 -251 2500 40 0 0 chr12 69461448 69461746 -74324709 - AluY SINE Alu -13 298 1 2174 101 0 0 chr12 69461915 69462211 -74324244 + AluSc SINE Alu 1 296 -13 828 183 28 6 chr12 69462316 69462496 -74323959 + AluSx SINE Alu 2 185 -127 742 171 0 0 chr12 69462947 69463064 -74323391 + FLAM_C SINE Alu 1 117 -16 1333 129 0 5 chr12 69463087 69463288 -74323167 + AluSg/x SINE Alu 81 280 -32 298 56 19 37 chr12 69463288 69463342 -74323113 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 834 129 7 50 chr12 69463898 69464037 -74322418 - FLAM_C SINE Alu 0 133 1 2173 119 0 0 chr12 69464169 69464471 -74321984 + AluSx SINE Alu 1 302 -10 675 157 128 12 chr12 69464717 69464889 -74321566 + L1MB8 LINE L1 5987 6178 0 1659 166 82 22 chr12 69465234 69465432 -74321023 + L1MB3 LINE L1 5807 5992 -191 1857 128 24 7 chr12 69465432 69465728 -74320727 - AluSx SINE Alu -10 302 2 1659 166 82 22 chr12 69465728 69465885 -74320570 + L1MB3 LINE L1 5992 6183 0 1356 137 119 47 chr12 69466214 69466491 -74319964 + AluJb SINE Alu 1 297 -15 1448 169 4 0 chr12 69466947 69467178 -74319277 + AluSx SINE Alu 4 235 -77 1732 130 4 19 chr12 69467212 69467482 -74318973 + AluJo SINE Alu 2 267 -45 2050 114 0 0 chr12 69468091 69468371 -74318084 + AluSx SINE Alu 2 281 -31 588 143 0 0 chr12 69468376 69468474 -74317981 + (TG)n Simple_repeat Simple_repeat 2 99 0 225 191 0 0 chr12 69468474 69468521 -74317934 + L1MC4 LINE L1 6652 6698 -1344 * 228 195 0 0 chr12 69468491 69468532 -74317923 - L1MC4 LINE L1 -1340 6702 6662 688 140 0 0 chr12 69468538 69468638 -74317817 - AluJb SINE Alu -208 104 5 203 299 222 8 chr12 69469491 69469608 -74316847 + MIR SINE MIR 20 161 -101 1571 139 90 0 chr12 69469649 69469916 -74316539 + AluJo SINE Alu 1 291 -21 550 174 0 41 chr12 69469991 69470089 -74316366 + FLAM_A SINE Alu 23 116 -26 2076 116 6 25 chr12 69470096 69470414 -74316041 - AluSq SINE Alu -1 312 1 686 121 0 0 chr12 69470557 69470694 -74315761 - AluSg/x SINE Alu 0 327 191 285 97 0 48 chr12 69472086 69472148 -74314307 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 348 223 0 0 chr12 69472200 69472339 -74314116 + C-rich Low_complexity Low_complexity 1 139 0 22 0 0 0 chr12 69472339 69472361 -74314094 + GC_rich Low_complexity Low_complexity 1 22 0 280 297 5 32 chr12 69472361 69472546 -74313909 + (CCCCG)n Simple_repeat Simple_repeat 1 180 0 994 131 0 0 chr12 69472693 69472838 -74313617 - AluSq/x SINE Alu -168 145 1 251 246 0 0 chr12 69472838 69472895 -74313560 + MIR SINE MIR 101 157 -105 1032 177 0 0 chr12 69472963 69473138 -74313317 - AluSg/x SINE Alu -4 306 132 2324 70 0 0 chr12 69473138 69473436 -74313019 - AluY SINE Alu -13 298 1 1815 150 3 20 chr12 69474007 69474313 -74312142 + AluJb SINE Alu 1 301 -11 808 205 0 0 chr12 69474313 69474469 -74311986 + AluJb SINE Alu 134 289 -23 301 183 128 12 chr12 69474650 69474814 -74311641 + AluSp SINE Alu 37 219 -84 22 0 0 0 chr12 69475167 69475189 -74311266 + AT_rich Low_complexity Low_complexity 1 22 0 923 237 4 13 chr12 69475249 69475485 -74310970 - AluJo SINE Alu -78 234 1 207 114 0 0 chr12 69476165 69476200 -74310255 + (TG)n Simple_repeat Simple_repeat 2 36 0 524 207 45 0 chr12 69476203 69476314 -74310141 - AluJb SINE Alu -196 116 1 234 176 77 143 chr12 69476396 69476432 -74310023 - MIR SINE MIR -10 252 215 2481 42 0 7 chr12 69476432 69476740 -74309715 - AluY SINE Alu -5 306 1 234 176 77 143 chr12 69476740 69476794 -74309661 - MIR SINE MIR -47 215 168 1610 40 0 10 chr12 69477555 69477753 -74308702 + L1PA5 LINE L1 5958 6153 -1 2069 116 3 7 chr12 69478272 69478573 -74307882 + AluSx SINE Alu 1 300 -12 2102 118 0 6 chr12 69478732 69479046 -74307409 + AluSx SINE Alu 1 312 0 2012 143 0 0 chr12 69479060 69479368 -74307087 + AluSg SINE Alu 1 308 -2 643 133 0 0 chr12 69479425 69479515 -74306940 + AluS SINE Alu 2 91 -222 1834 85 4 0 chr12 69479515 69479751 -74306704 + AluSp SINE Alu 54 290 -23 712 127 36 0 chr12 69480016 69480126 -74306329 + MSTB1 LTR MaLR 318 431 -1 4390 111 30 2 chr12 69480126 69480758 -74305697 - MER39B LTR ERV1 -3 650 1 364 208 136 52 chr12 69480824 69480978 -74305477 - MER34 LTR ERV1 0 542 376 2195 99 7 0 chr12 69481123 69481426 -74305029 + AluSx SINE Alu 1 305 -7 293 107 0 18 chr12 69481462 69481518 -74304937 + (TG)n Simple_repeat Simple_repeat 2 56 0 321 220 34 0 chr12 69481519 69481578 -74304877 - MER34C LTR ERV1 -337 248 188 623 179 0 68 chr12 69481579 69481696 -74304759 + FLAM_A SINE Alu 1 109 -33 720 191 25 32 chr12 69481729 69481886 -74304569 - MER34C LTR ERV1 -390 195 40 25 31 0 0 chr12 69481989 69482021 -74304434 + AT_rich Low_complexity Low_complexity 1 32 0 1938 147 0 3 chr12 69482147 69482440 -74304015 - AluJo SINE Alu -20 292 1 1884 101 0 0 chr12 69482455 69482712 -74303743 - AluSx SINE Alu -6 306 50 1755 152 14 7 chr12 69482973 69483262 -74303193 + AluSx SINE Alu 1 291 -21 323 160 80 60 chr12 69483324 69483424 -74303031 + L1ME1 LINE L1 6054 6155 -11 1410 171 99 0 chr12 69483557 69483656 -74302799 + AluJo SINE Alu 7 95 -217 221 0 0 33 chr12 69483656 69483686 -74302769 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1410 171 99 0 chr12 69483686 69483849 -74302606 + AluJo SINE Alu 95 295 -17 941 262 198 33 chr12 69483850 69484298 -74302157 + L1MC4a LINE L1 5461 5834 -1974 1841 150 3 0 chr12 69484298 69484584 -74301871 + AluJb SINE Alu 9 295 -17 941 262 198 33 chr12 69484584 69484796 -74301659 + L1MC4a LINE L1 5834 6230 -1578 306 291 152 0 chr12 69484844 69484995 -74301460 + L1MC5 LINE L1 7716 7889 -72 2099 92 0 7 chr12 69485004 69485296 -74301159 - AluSg SINE Alu -20 290 1 252 296 14 0 chr12 69485645 69485716 -74300739 - MIR SINE MIR -107 155 84 1297 182 19 58 chr12 69486246 69486469 -74299986 - AluJb SINE Alu -16 296 87 2139 119 3 0 chr12 69486469 69486771 -74299684 - AluSx SINE Alu -9 303 1 1297 182 19 58 chr12 69486771 69486855 -74299600 - AluJb SINE Alu -225 87 1 2193 115 0 0 chr12 69487020 69487324 -74299131 - AluSx SINE Alu -8 304 1 277 280 121 6 chr12 69487684 69487866 -74298589 + L1ME4a LINE L1 5836 6038 -83 30 45 0 0 chr12 69487891 69487935 -74298520 + AT_rich Low_complexity Low_complexity 1 44 0 593 168 88 32 chr12 69487960 69488085 -74298370 - FLAM_C SINE Alu 0 133 2 724 145 34 0 chr12 69488282 69488399 -74298056 + AluJb SINE Alu 171 291 -21 1131 85 0 20 chr12 69489132 69489285 -74297170 + AluSq/x SINE Alu 1 150 -163 1849 110 0 74 chr12 69489290 69489599 -74296856 + AluSx SINE Alu 4 289 -23 333 0 0 0 chr12 69489603 69489640 -74296815 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1465 150 117 0 chr12 69489645 69489918 -74296537 + AluSx SINE Alu 1 305 -7 429 278 29 49 chr12 69490070 69490278 -74296177 + MER20B DNA MER1_type 1 214 -5 1323 211 52 107 chr12 69490437 69490921 -74295534 + LTR16B LTR ERVL 5 461 -3 1681 316 49 33 chr12 69491256 69492051 -74294404 + ERVL LTR ERVL 362 1169 -3827 2312 72 23 0 chr12 69492059 69492183 -74294272 + AluY SINE Alu 1 121 -190 273 29 0 0 chr12 69492183 69492217 -74294238 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2312 72 23 0 chr12 69492217 69492396 -74294059 + AluY SINE Alu 121 311 0 1362 288 40 8 chr12 69492411 69493039 -74293416 + ERVL LTR ERVL 1231 1976 -3020 422 266 37 0 chr12 69493064 69493173 -74293282 + ERVL LTR ERVL 3354 3466 -2298 894 350 31 11 chr12 69493176 69493627 -74292828 + ERVL LTR ERVL 3927 4386 -1268 634 75 0 0 chr12 69494537 69494617 -74291838 - MADE1 DNA Mariner 0 80 1 1854 116 16 36 chr12 69494778 69495081 -74291374 + AluSg SINE Alu 1 297 -13 1860 116 35 14 chr12 69495366 69495650 -74290805 + AluSp SINE Alu 1 290 -23 2184 100 6 10 chr12 69495903 69496214 -74290241 + AluSq SINE Alu 2 311 -2 257 301 49 16 chr12 69496327 69496510 -74289945 + L1ME LINE L1 5574 5762 -359 1893 164 27 14 chr12 69496611 69496978 -74289477 + L1MB2 LINE L1 5576 5947 -224 265 271 146 31 chr12 69496994 69497090 -74289365 + L2 LINE L2 3203 3309 -4 207 0 0 0 chr12 69497100 69497123 -74289332 + (CA)n Simple_repeat Simple_repeat 2 24 0 2206 107 0 0 chr12 69497138 69497437 -74289018 - AluSg SINE Alu -10 300 2 938 125 128 116 chr12 69498032 69498352 -74288103 - MER33 DNA MER1_type 0 324 1 198 0 0 0 chr12 69498489 69498511 -74287944 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2222 83 3 7 chr12 69498511 69498811 -74287644 + AluSg SINE Alu 1 299 -11 839 192 0 0 chr12 69498893 69499044 -74287411 + FAM SINE Alu 1 49 0 2031 109 0 3 chr12 69499281 69499564 -74286891 + AluSg SINE Alu 1 282 -28 429 214 71 0 chr12 69499735 69499833 -74286622 + L2 LINE L2 3168 3272 0 2157 96 7 3 chr12 69501163 69501464 -74284991 + AluSq SINE Alu 1 302 -11 1851 157 0 3 chr12 69502138 69502451 -74284004 + AluSx SINE Alu 1 312 0 200 318 136 0 chr12 69502528 69502616 -74283839 + MIR3 SINE MIR 6 105 -103 2291 77 20 0 chr12 69502709 69503007 -74283448 + AluSq SINE Alu 1 304 -9 347 262 36 0 chr12 69503042 69503126 -74283329 - L2 LINE L2 0 3272 3186 2047 119 0 7 chr12 69503179 69503473 -74282982 - AluJb SINE Alu -20 292 1 2080 114 17 0 chr12 69504362 69504661 -74281794 + AluSx SINE Alu 2 305 -7 25 90 0 0 chr12 69506518 69506585 -74279870 + GC_rich Low_complexity Low_complexity 1 67 0 272 222 7 56 chr12 69506649 69506793 -74279662 + (CCCCG)n Simple_repeat Simple_repeat 2 138 0 273 215 47 65 chr12 69507743 69507850 -74278605 - MIR SINE MIR -48 214 110 239 282 122 39 chr12 69508113 69508269 -74278186 - MIR SINE MIR -61 201 33 1715 104 86 4 chr12 69508539 69508817 -74277638 + AluSq SINE Alu 1 301 -12 495 176 12 0 chr12 69508958 69509043 -74277412 + FLAM_A SINE Alu 40 125 -17 1644 165 6 44 chr12 69509068 69509384 -74277071 + AluJo SINE Alu 1 304 -8 1848 128 0 17 chr12 69509462 69509779 -74276676 + AluSx SINE Alu 1 312 0 1857 133 20 17 chr12 69509846 69510140 -74276315 - AluJb SINE Alu -17 295 1 1855 102 0 0 chr12 69510305 69510559 -74275896 - AluSx SINE Alu -13 299 46 501 282 13 39 chr12 69510559 69510715 -74275740 + MIR SINE MIR 68 219 -43 666 289 178 18 chr12 69510765 69511221 -74275234 + MLT1L LTR MaLR 19 547 -68 2337 66 10 0 chr12 69511228 69511529 -74274926 - AluSp SINE Alu -9 304 1 1944 110 11 11 chr12 69511851 69512173 -74274282 + AluSx SINE Alu 1 322 0 2200 89 21 0 chr12 69512212 69512503 -74273952 + AluSg SINE Alu 1 297 -13 713 288 88 33 chr12 69512554 69512794 -74273661 - MIR SINE MIR -8 254 2 303 292 90 0 chr12 69512809 69512898 -74273557 - L1MC4 LINE L1 -1327 6715 6619 437 223 147 43 chr12 69513059 69513243 -74273212 - L1ME2 LINE L1 -10 6154 5952 1552 161 7 25 chr12 69513265 69513550 -74272905 - AluJb SINE Alu -27 285 6 1120 155 12 0 chr12 69513929 69514097 -74272358 - FAM SINE Alu -3 172 3 1941 118 38 0 chr12 69514280 69514446 -74272009 - AluSx SINE Alu -13 299 116 423 0 0 0 chr12 69514446 69514493 -74271962 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1941 118 38 0 chr12 69514493 69514614 -74271841 - AluSx SINE Alu -196 116 1 2097 119 3 0 chr12 69515221 69515523 -74270932 + AluSx SINE Alu 1 303 -9 3151 145 30 64 chr12 69516398 69516766 -74269689 - L1MA8 LINE L1 0 6291 5948 1968 155 0 16 chr12 69516766 69517073 -74269382 - AluJo SINE Alu -13 299 1 3151 145 30 64 chr12 69517073 69517329 -74269126 - L1MA8 LINE L1 -343 5948 5685 187 200 17 50 chr12 69517330 69517390 -74269065 - MER5A DNA MER1_type -115 74 17 634 299 38 17 chr12 69517453 69517688 -74268767 + MIR SINE MIR 21 262 0 338 187 67 0 chr12 69517700 69517775 -74268680 + MER113 DNA MER1_type? 1 80 -441 2107 144 0 0 chr12 69517882 69518180 -74268275 + AluSx SINE Alu 3 300 -12 1702 159 0 62 chr12 69518204 69518525 -74267930 + AluJb SINE Alu 1 301 -11 257 308 0 33 chr12 69518625 69518716 -74267739 - MIR SINE MIR -79 129 42 439 252 39 8 chr12 69519082 69519209 -74267246 + MIR SINE MIR 11 141 -121 900 241 33 16 chr12 69519737 69519982 -74266473 + MLT1K LTR MaLR 323 571 -17 3506 197 45 30 chr12 69520240 69520536 -74265919 - L1ME1 LINE L1 -89 6077 5787 915 112 0 22 chr12 69520536 69520670 -74265785 - FLAM_C SINE Alu -2 131 1 3506 197 45 30 chr12 69520670 69521625 -74264830 - L1ME1 LINE L1 -379 5787 4810 687 127 16 16 chr12 69521646 69521772 -74264683 - L1MB4 LINE L1 0 6180 6055 250 270 0 14 chr12 69521985 69522059 -74264396 - MIR3 SINE MIR -23 185 113 551 199 18 58 chr12 69522704 69522768 -74263687 - MIR SINE MIR -20 242 177 1537 174 10 47 chr12 69522768 69523066 -74263389 + AluJo SINE Alu 1 287 -25 551 199 18 58 chr12 69523066 69523172 -74263283 - MIR SINE MIR -85 177 79 1875 147 3 14 chr12 69524215 69524507 -74261948 + AluJo SINE Alu 12 300 -12 1320 146 0 67 chr12 69524509 69524749 -74261706 + AluJo SINE Alu 86 309 -3 191 86 0 29 chr12 69524893 69524928 -74261527 + (GA)n Simple_repeat Simple_repeat 1 34 0 557 254 28 34 chr12 69525172 69525349 -74261106 - MER104 DNA MER2_type 0 180 5 474 176 110 0 chr12 69525476 69525567 -74260888 + FRAM SINE Alu 70 170 -6 1979 138 3 17 chr12 69525596 69525894 -74260561 - AluJb SINE Alu -16 296 3 2266 123 3 0 chr12 69525905 69526214 -74260241 - AluSp SINE Alu -3 310 1 2418 70 0 38 chr12 69526223 69526537 -74259918 - AluY SINE Alu -9 302 1 224 281 30 30 chr12 69527243 69527407 -74259048 + L2 LINE L2 1935 2098 -1216 320 319 48 12 chr12 69527523 69527689 -74258766 - MIR SINE MIR -71 191 20 285 311 44 22 chr12 69527706 69527886 -74258569 + L2 LINE L2 2174 2357 -957 1986 169 5 63 chr12 69527987 69528221 -74258234 - MLT1B LTR MaLR 0 390 189 1758 175 7 14 chr12 69528221 69528518 -74257937 - AluJb SINE Alu -17 295 1 1986 169 5 63 chr12 69528518 69528697 -74257758 - MLT1B LTR MaLR -201 189 1 434 221 148 70 chr12 69528829 69528986 -74257469 - L1ME4a LINE L1 -3 6118 5975 2086 117 7 13 chr12 69528986 69529284 -74257171 + AluSx SINE Alu 1 296 -16 1235 161 190 43 chr12 69529291 69529664 -74256791 - MSTC LTR MaLR 0 428 1 434 221 148 70 chr12 69529664 69529721 -74256734 - L1ME4a LINE L1 -151 5970 5919 1950 160 7 0 chr12 69529721 69530014 -74256441 + AluJb SINE Alu 3 297 -15 434 221 148 70 chr12 69530014 69530134 -74256321 - L1ME4a LINE L1 -202 5919 5748 1646 166 26 3 chr12 69530590 69530898 -74255557 + L1MB7 LINE L1 5565 5879 -305 405 272 10 10 chr12 69530906 69531009 -74255446 + FRAM SINE Alu 9 111 -65 487 181 39 24 chr12 69531010 69531137 -74255318 - FRAM SINE Alu -26 150 22 209 215 37 47 chr12 69531367 69531474 -74254981 + GA-rich Low_complexity Low_complexity 1 106 0 832 111 8 8 chr12 69531641 69531758 -74254697 + AluJb SINE Alu 1 117 -195 2398 75 7 0 chr12 69531874 69532167 -74254288 - AluSp SINE Alu -18 295 1 253 315 11 11 chr12 69532308 69532400 -74254055 + L1ME LINE L1 5612 5703 -418 915 94 0 0 chr12 69532403 69532520 -74253935 + AluSq/x SINE Alu 1 117 -195 1842 109 41 37 chr12 69532640 69532934 -74253521 - AluSq SINE Alu -18 295 1 276 198 31 52 chr12 69532984 69533080 -74253375 + MIR SINE MIR 169 262 0 907 182 11 23 chr12 69533157 69533333 -74253122 + FAM SINE Alu 1 174 -1 1905 157 13 3 chr12 69534184 69534489 -74251966 + AluJb SINE Alu 3 310 -2 899 130 84 32 chr12 69534659 69534813 -74251642 + AluJb SINE Alu 105 266 -46 257 234 93 19 chr12 69535016 69535123 -74251332 - MIR SINE MIR -44 218 104 596 119 0 0 chr12 69535193 69535277 -74251178 + FLAM_C SINE Alu 35 118 -25 40 21 0 0 chr12 69535279 69535326 -74251129 + AT_rich Low_complexity Low_complexity 1 47 0 2329 211 92 43 chr12 69535506 69536180 -74250275 - L1ME3 LINE L1 -1 6161 5455 727 291 4 25 chr12 69536595 69536832 -74249623 - MIR SINE MIR 0 262 31 207 0 0 0 chr12 69537002 69537025 -74249430 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1633 162 46 25 chr12 69537027 69537171 -74249284 - AluJb SINE Alu -22 290 151 2332 97 0 7 chr12 69537171 69537479 -74248976 - AluSg SINE Alu -4 306 1 1633 162 46 25 chr12 69537479 69537618 -74248837 - AluJb SINE Alu -161 151 1 1897 100 0 0 chr12 69538310 69538549 -74247906 - AluSc SINE Alu -70 239 1 1640 169 3 14 chr12 69538571 69538855 -74247600 - AluJo SINE Alu -9 303 23 2528 67 0 0 chr12 69538960 69539260 -74247195 - AluY SINE Alu -11 300 1 285 339 148 20 chr12 69539474 69539819 -74246636 - L3 LINE CR1 -115 1462 1074 2328 106 0 6 chr12 69540171 69540483 -74245972 - AluSg SINE Alu 0 310 1 2148 123 0 3 chr12 69541128 69541428 -74245027 - AluSx SINE Alu -13 299 1 1807 155 17 3 chr12 69541439 69541729 -74244726 - AluJb SINE Alu -18 294 1 352 145 145 0 chr12 69542213 69542282 -74244173 - FLAM_A SINE Alu -35 98 20 1721 178 22 95 chr12 69542607 69542846 -74243609 - MLT1B LTR MaLR 0 390 192 1656 173 0 49 chr12 69542846 69543152 -74243303 - AluJb SINE Alu -21 291 1 1721 178 22 95 chr12 69543152 69543322 -74243133 - MLT1B LTR MaLR -198 192 11 1420 181 76 11 chr12 69543337 69543614 -74242841 - AluJb SINE Alu -17 295 1 2177 103 3 35 chr12 69543921 69544232 -74242223 - AluSx SINE Alu -11 301 1 732 171 0 0 chr12 69544290 69544407 -74242048 + FLAM_C SINE Alu 1 117 -16 1446 124 0 5 chr12 69544430 69544631 -74241824 + AluSg/x SINE Alu 81 280 -32 298 56 19 37 chr12 69544631 69544685 -74241770 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 813 137 7 50 chr12 69545241 69545380 -74241075 - FLAM_C SINE Alu 0 133 1 2300 119 0 0 chr12 69545512 69545814 -74240641 + AluSx SINE Alu 1 302 -10 677 157 128 12 chr12 69546061 69546233 -74240222 + L1MB8 LINE L1 5987 6178 0 1677 166 82 22 chr12 69546578 69546776 -74239679 + L1MB3 LINE L1 5807 5992 -191 1974 128 24 7 chr12 69546776 69547072 -74239383 - AluSx SINE Alu -10 302 2 1677 166 82 22 chr12 69547072 69547229 -74239226 + L1MB3 LINE L1 5992 6183 0 1466 137 119 47 chr12 69547558 69547835 -74238620 + AluJb SINE Alu 1 297 -15 1544 169 4 0 chr12 69548291 69548522 -74237933 + AluSx SINE Alu 4 235 -77 2022 136 3 7 chr12 69548556 69548858 -74237597 + AluJo SINE Alu 2 302 -10 2560 69 0 0 chr12 69548868 69549172 -74237283 + AluY SINE Alu 1 304 -7 225 323 0 0 chr12 69549301 69549363 -74237092 + L1ME LINE L1 5532 5593 -528 1606 177 7 30 chr12 69549598 69549903 -74236552 + AluJb SINE Alu 1 298 -14 1124 157 86 0 chr12 69551573 69551771 -74234684 - MER46A DNA MER2_type -6 230 16 1507 201 48 3 chr12 69551895 69552209 -74234246 - MER58B DNA MER1_type -13 328 1 2125 141 0 16 chr12 69552588 69552900 -74233555 + AluJo SINE Alu 1 307 -5 600 287 32 0 chr12 69553961 69554149 -74232306 - L2 LINE L2 -280 3033 2840 241 281 194 38 chr12 69555567 69555727 -74230728 + MIR SINE MIR 54 238 -24 2374 75 7 0 chr12 69555785 69556140 -74230315 + AluY SINE Alu 1 357 0 452 218 143 8 chr12 69556180 69556313 -74230142 + MER103 DNA DNA 1 151 -15 2305 113 7 3 chr12 69556519 69556829 -74229626 + AluSx SINE Alu 1 311 -1 1779 181 0 10 chr12 69557087 69557390 -74229065 + AluJo SINE Alu 5 304 -8 446 0 0 18 chr12 69558369 69558424 -74228031 + (TATG)n Simple_repeat Simple_repeat 4 57 0 2115 98 7 18 chr12 69558424 69558710 -74227745 - AluSx SINE Alu -29 283 1 2320 169 36 7 chr12 69560088 69560502 -74225953 + MSTB LTR MaLR 1 426 0 894 128 62 6 chr12 69560503 69560682 -74225773 + MSTB-int LTR MaLR 3 191 -1460 1639 184 17 0 chr12 69560682 69560976 -74225479 + AluJb SINE Alu 1 299 -13 1028 195 0 0 chr12 69560976 69561145 -74225310 - HSMAR2 DNA Mariner -801 501 333 716 155 69 0 chr12 69561175 69561291 -74225164 - FLAM_C SINE Alu -18 125 2 1046 87 34 0 chr12 69561292 69561441 -74225014 - HSMAR2 DNA Mariner -964 338 185 1042 168 0 0 chr12 69561441 69561614 -74224841 + AluSg/x SINE Alu 133 305 -5 1186 77 6 0 chr12 69561614 69561770 -74224685 - HSMAR2 DNA Mariner -1106 196 40 1198 240 52 3 chr12 69561786 69562074 -74224381 - AluJo SINE Alu 0 302 1 533 200 17 33 chr12 69562625 69562805 -74223650 + G-rich Low_complexity Low_complexity 3 179 0 285 255 0 0 chr12 69562860 69562907 -74223548 - AluSp/q SINE Alu -47 256 210 1228 184 32 5 chr12 69563851 69564068 -74222387 - MER58A DNA MER1_type 0 224 2 195 114 0 0 chr12 69564406 69564441 -74222014 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 2064 132 4 0 chr12 69565195 69565476 -74220979 - AluSx SINE Alu -30 282 1 2235 119 0 0 chr12 69565700 69565995 -74220460 + AluSx SINE Alu 3 297 -15 426 248 55 7 chr12 69566069 69566214 -74220241 - L1MC5 LINE L1 -506 7455 7304 655 264 77 18 chr12 69566355 69566575 -74219880 - L1MC5 LINE L1 -720 7241 7009 278 294 5 99 chr12 69567273 69567466 -74218989 - MER5A DNA MER1_type 0 189 1 187 94 31 0 chr12 69567505 69567537 -74218918 + MER5A DNA MER1_type 43 75 -114 203 224 86 0 chr12 69567540 69567598 -74218857 - MER5A DNA MER1_type -118 71 9 1075 213 57 16 chr12 69568539 69568783 -74217672 - MIR SINE MIR -4 258 5 2236 98 3 29 chr12 69568872 69569187 -74217268 - AluY SINE Alu -4 307 1 488 316 45 0 chr12 69569229 69569406 -74217049 - L2 LINE L2 -243 3070 2886 340 296 54 71 chr12 69569405 69569645 -74216810 + L2 LINE L2 2874 3109 -163 * 210 306 56 0 chr12 69569752 69569824 -74216631 - MIR SINE MIR -100 108 33 1819 145 54 0 chr12 69570680 69570868 -74215587 - AluJb SINE Alu 0 312 101 194 0 39 0 chr12 69570868 69570894 -74215561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1819 145 54 0 chr12 69570894 69571001 -74215454 - AluJb SINE Alu -211 101 1 2087 104 3 40 chr12 69571111 69571247 -74215208 + AluSq SINE Alu 3 142 -171 2438 62 0 3 chr12 69571247 69571538 -74214917 + AluY SINE Alu 1 290 -21 2467 80 0 3 chr12 69571540 69571852 -74214603 + AluY SINE Alu 1 311 0 2087 104 3 40 chr12 69571852 69572010 -74214445 + AluSq SINE Alu 143 289 -24 814 218 32 0 chr12 69572062 69572218 -74214237 - AluJb SINE Alu -15 297 137 1802 162 26 26 chr12 69572631 69572934 -74213521 + AluJb SINE Alu 1 303 -9 207 0 0 0 chr12 69573550 69573573 -74212882 + (T)n Simple_repeat Simple_repeat 1 23 0 246 281 234 0 chr12 69573728 69573856 -74212599 + MIR SINE MIR 63 220 -42 870 177 130 40 chr12 69573978 69574255 -74212200 + MER33 DNA MER1_type 23 324 0 302 304 44 30 chr12 69574608 69574743 -74211712 - MARNA DNA Mariner -354 232 96 23 33 0 0 chr12 69575123 69575153 -74211302 + AT_rich Low_complexity Low_complexity 1 30 0 315 327 125 40 chr12 69575344 69575616 -74210839 + L1ME LINE L1 5298 5592 -529 561 113 149 125 chr12 69575731 69575782 -74210673 - L1MB8 LINE L1 0 6178 6130 2205 100 7 7 chr12 69575782 69576081 -74210374 + AluSq SINE Alu 1 299 -14 561 113 149 125 chr12 69576081 69576197 -74210258 - L1MB8 LINE L1 -48 6130 6007 1353 186 64 4 chr12 69576274 69576554 -74209901 - L1MB8 LINE L1 -183 5995 5699 1290 180 0 28 chr12 69576557 69576807 -74209648 - AluJo SINE Alu -16 296 54 327 122 0 0 chr12 69576839 69576888 -74209567 - AluJo SINE Alu -241 61 13 878 227 103 47 chr12 69576888 69577212 -74209243 - L1MB8 LINE L1 -685 5499 5137 1665 153 0 4 chr12 69577212 69577466 -74208989 + AluJb SINE Alu 1 253 -59 878 227 103 47 chr12 69577466 69577695 -74208760 - L1MB8 LINE L1 -1047 5137 4922 338 255 39 0 chr12 69577835 69577937 -74208518 - L1MB8 LINE L1 -1492 4654 4549 2505 74 0 0 chr12 69577982 69578292 -74208163 - AluY SINE Alu 0 311 2 453 191 316 0 chr12 69578470 69578606 -74207849 - MER3 DNA MER1_type -23 186 8 1059 211 67 0 chr12 69578607 69578815 -74207640 + MER58A DNA MER1_type 2 223 -1 767 236 61 0 chr12 69578823 69578988 -74207467 - MER5B DNA MER1_type -3 175 1 2144 118 0 10 chr12 69579127 69579432 -74207023 - AluSx SINE Alu -10 302 1 585 203 235 7 chr12 69579638 69579791 -74206664 - MER5A DNA MER1_type 0 189 2 250 296 235 9 chr12 69579800 69579915 -74206540 - MER5A DNA MER1_type 0 189 49 242 307 21 90 chr12 69579903 69580092 -74206363 + L2 LINE L2 2584 2759 -555 * 671 264 77 18 chr12 69581839 69582059 -74204396 - L1MC5 LINE L1 -720 7241 7009 265 273 2 92 chr12 69582757 69582951 -74203504 - MER5A DNA MER1_type 0 178 1 187 94 31 0 chr12 69582990 69583022 -74203433 + MER5A DNA MER1_type 43 75 -114 203 224 86 0 chr12 69583025 69583083 -74203372 - MER5A DNA MER1_type -118 71 9 1075 213 57 16 chr12 69584024 69584268 -74202187 - MIR SINE MIR -4 258 5 2236 98 3 29 chr12 69584357 69584672 -74201783 - AluY SINE Alu -4 307 1 488 316 45 0 chr12 69584714 69584891 -74201564 - L2 LINE L2 -243 3070 2886 340 296 54 71 chr12 69584890 69585130 -74201325 + L2 LINE L2 2874 3109 -163 * 210 306 56 0 chr12 69585237 69585309 -74201146 - MIR SINE MIR -100 108 33 1846 142 54 0 chr12 69586165 69586353 -74200102 - AluJb SINE Alu 0 312 101 194 0 39 0 chr12 69586353 69586379 -74200076 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1846 142 54 0 chr12 69586379 69586486 -74199969 - AluJb SINE Alu -211 101 1 1070 96 0 15 chr12 69586596 69586732 -74199723 + AluSq/x SINE Alu 3 136 -176 1555 130 4 51 chr12 69586732 69587008 -74199447 + AluY SINE Alu 1 263 -48 1728 76 5 0 chr12 69587341 69587552 -74198903 - AluSp SINE Alu -6 307 96 1038 247 101 34 chr12 69587558 69587995 -74198460 + L1M4 LINE L1 4672 5137 -1009 459 276 56 5 chr12 69588166 69588362 -74198093 + AluSq SINE Alu 94 299 -14 293 328 9 43 chr12 69588994 69589110 -74197345 - MIR SINE MIR -74 134 23 308 281 35 53 chr12 69589267 69589381 -74197074 - L2 LINE L2 -6 3266 3155 309 347 24 60 chr12 69589787 69589954 -74196501 - MIR3 SINE MIR -45 163 3 1915 134 10 33 chr12 69589999 69590306 -74196149 + AluJo SINE Alu 5 304 -8 852 102 0 8 chr12 69590341 69590459 -74195996 - AluSx SINE Alu 0 312 196 1171 89 0 7 chr12 69590460 69590606 -74195849 - AluSx SINE Alu -166 146 2 269 253 0 27 chr12 69590609 69590684 -74195771 - MIR SINE MIR -3 259 187 180 0 0 0 chr12 69591624 69591644 -74194811 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2241 68 3 30 chr12 69591893 69592188 -74194267 + AluY SINE Alu 1 287 -24 265 151 0 23 chr12 69592233 69592286 -74194169 - MIR SINE MIR -115 147 98 907 141 0 22 chr12 69592286 69592421 -74194034 + FLAM_C SINE Alu 2 133 0 217 231 0 0 chr12 69592436 69592475 -74193980 - MIR SINE MIR -92 116 78 2013 139 0 19 chr12 69592911 69593221 -74193234 + AluSx SINE Alu 1 304 -8 2143 117 3 19 chr12 69593739 69594047 -74192408 + AluSx SINE Alu 1 303 -9 668 75 0 0 chr12 69594258 69594338 -74192117 - MADE1 DNA Mariner 0 80 1 1963 116 16 36 chr12 69594499 69594802 -74191653 + AluSg SINE Alu 1 297 -13 1915 117 39 14 chr12 69595087 69595370 -74191085 + AluSp SINE Alu 1 290 -23 234 143 0 61 chr12 69595526 69595575 -74190880 + L1P LINE L1 5320 5365 -786 2286 93 7 10 chr12 69595623 69595924 -74190531 + AluSq SINE Alu 2 301 -12 327 284 49 16 chr12 69596047 69596230 -74190225 + L1ME LINE L1 5574 5762 -359 1945 164 27 14 chr12 69596331 69596698 -74189757 + L1MB2 LINE L1 5576 5947 -224 263 271 146 31 chr12 69596714 69596810 -74189645 + L2 LINE L2 3203 3309 -4 207 0 0 0 chr12 69596820 69596843 -74189612 + (CA)n Simple_repeat Simple_repeat 2 24 0 2314 107 0 0 chr12 69596858 69597157 -74189298 - AluSg SINE Alu -10 300 2 1040 125 128 116 chr12 69597752 69598072 -74188383 - MER33 DNA MER1_type 0 324 1 198 0 0 0 chr12 69598209 69598231 -74188224 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2336 83 3 7 chr12 69598231 69598531 -74187924 + AluSg SINE Alu 1 299 -11 887 192 0 0 chr12 69598613 69598764 -74187691 + FAM SINE Alu 1 49 0 2133 109 0 3 chr12 69599001 69599284 -74187171 + AluSg SINE Alu 1 282 -28 420 202 75 0 chr12 69599455 69599549 -74186906 + L2 LINE L2 3168 3268 -4 2266 96 7 3 chr12 69600883 69601184 -74185271 + AluSq SINE Alu 1 302 -11 1959 157 0 3 chr12 69601859 69602172 -74184283 + AluSx SINE Alu 1 312 0 203 318 136 0 chr12 69602249 69602337 -74184118 + MIR3 SINE MIR 6 105 -103 2198 84 3 37 chr12 69602430 69602567 -74183888 + AluSq SINE Alu 1 141 -172 2403 62 0 7 chr12 69602567 69602859 -74183596 + AluY SINE Alu 1 290 -21 2467 80 0 3 chr12 69602861 69603173 -74183282 + AluY SINE Alu 1 311 0 2198 84 3 37 chr12 69603173 69603331 -74183124 + AluSq SINE Alu 142 289 -24 814 218 32 0 chr12 69603383 69603539 -74182916 - AluJb SINE Alu -15 297 137 1802 162 26 26 chr12 69603952 69604255 -74182200 + AluJb SINE Alu 1 303 -9 207 0 0 0 chr12 69604871 69604894 -74181561 + (T)n Simple_repeat Simple_repeat 1 23 0 246 281 234 0 chr12 69605049 69605177 -74181278 + MIR SINE MIR 63 220 -42 870 177 130 40 chr12 69605299 69605576 -74180879 + MER33 DNA MER1_type 23 324 0 302 304 44 30 chr12 69605929 69606064 -74180391 - MARNA DNA Mariner -354 232 96 23 33 0 0 chr12 69606444 69606474 -74179981 + AT_rich Low_complexity Low_complexity 1 30 0 315 327 125 40 chr12 69606665 69606937 -74179518 + L1ME LINE L1 5298 5592 -529 561 113 149 125 chr12 69607052 69607103 -74179352 - L1MB8 LINE L1 0 6178 6130 2205 100 7 7 chr12 69607103 69607402 -74179053 + AluSq SINE Alu 1 299 -14 561 113 149 125 chr12 69607402 69607518 -74178937 - L1MB8 LINE L1 -48 6130 6007 1353 186 64 4 chr12 69607595 69607875 -74178580 - L1MB8 LINE L1 -183 5995 5699 1282 185 0 28 chr12 69607878 69608127 -74178328 - AluJo SINE Alu -17 295 54 327 122 0 0 chr12 69608159 69608208 -74178247 - AluJo SINE Alu -241 61 13 878 227 103 47 chr12 69608208 69608532 -74177923 - L1MB8 LINE L1 -685 5499 5137 1665 153 0 4 chr12 69608532 69608786 -74177669 + AluJb SINE Alu 1 253 -59 878 227 103 47 chr12 69608786 69609015 -74177440 - L1MB8 LINE L1 -1047 5137 4922 338 255 39 0 chr12 69609155 69609257 -74177198 - L1MB8 LINE L1 -1492 4654 4549 2505 74 0 0 chr12 69609302 69609612 -74176843 - AluY SINE Alu 0 311 2 453 191 316 0 chr12 69609790 69609926 -74176529 - MER3 DNA MER1_type -23 186 8 1059 211 67 0 chr12 69609927 69610135 -74176320 + MER58A DNA MER1_type 2 223 -1 767 236 61 0 chr12 69610143 69610308 -74176147 - MER5B DNA MER1_type -3 175 1 2144 118 0 10 chr12 69610447 69610752 -74175703 - AluSx SINE Alu -10 302 1 585 203 235 7 chr12 69610958 69611111 -74175344 - MER5A DNA MER1_type 0 189 2 250 296 235 9 chr12 69611120 69611235 -74175220 - MER5A DNA MER1_type 0 189 49 242 307 21 90 chr12 69611223 69611412 -74175043 + L2 LINE L2 2584 2759 -555 * 2080 119 24 0 chr12 69613010 69613303 -74173152 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr12 69616247 69616279 -74170176 + AT_rich Low_complexity Low_complexity 1 32 0 201 177 145 48 chr12 69616831 69616893 -74169562 - MIR SINE MIR -124 138 71 727 187 22 0 chr12 69617241 69617375 -74169080 + MER58B DNA MER1_type 189 325 -16 1684 148 15 8 chr12 69617401 69617664 -74168791 - MER44D DNA MER2_type 0 605 469 1735 131 7 41 chr12 69617664 69617954 -74168501 + AluJb SINE Alu 1 280 -32 1334 157 0 0 chr12 69618005 69618209 -74168246 - MER44D DNA MER2_type -240 465 262 2120 93 0 30 chr12 69619790 69620090 -74166365 - AluSg SINE Alu -19 291 1 2028 111 10 0 chr12 69621186 69621475 -74164980 - AluSq SINE Alu -21 292 1 734 243 65 0 chr12 69622207 69622376 -74164079 - MER58A DNA MER1_type -2 222 43 661 211 15 8 chr12 69622503 69622636 -74163819 + AluJo SINE Alu 2 135 -177 1585 181 102 61 chr12 69622695 69622921 -74163534 - LTR40c LTR ERVL -5 460 245 1932 111 4 0 chr12 69622921 69623183 -74163272 - AluSx SINE Alu -49 263 1 1585 181 102 61 chr12 69623183 69623314 -74163141 - LTR40c LTR ERVL -220 245 79 1489 122 0 0 chr12 69623314 69623519 -74162936 + AluSq SINE Alu 86 290 -23 1585 181 102 61 chr12 69623519 69623602 -74162853 - LTR40c LTR ERVL -386 79 1 1704 172 3 0 chr12 69624230 69624527 -74161928 - AluJb SINE Alu -14 298 1 2472 59 0 0 chr12 69624739 69625044 -74161411 - AluSg SINE Alu -5 305 1 2407 174 58 43 chr12 69625640 69626099 -74160356 + MLT1F LTR MaLR 1 471 -71 2155 95 13 0 chr12 69626099 69626403 -74160052 - AluSp SINE Alu -5 308 1 2407 174 58 43 chr12 69626403 69626477 -74159978 + MLT1F LTR MaLR 471 542 0 266 86 328 17 chr12 69626530 69626588 -74159867 + MADE1 DNA Mariner 1 76 -4 2344 87 0 3 chr12 69626707 69627018 -74159437 + AluSq SINE Alu 1 310 -3 1568 157 32 18 chr12 69627361 69627642 -74158813 - AluJb SINE Alu -27 285 1 686 139 177 70 chr12 69627646 69627804 -74158651 - FRAM SINE Alu -9 167 1 395 208 58 117 chr12 69627820 69627974 -74158481 + LTR45B LTR ERV1 330 474 -15 2258 73 0 10 chr12 69629287 69629599 -74156856 - AluSq SINE Alu 0 309 1 270 174 29 72 chr12 69629811 69629880 -74156575 - MIR SINE MIR -73 189 124 1491 106 138 0 chr12 69629939 69630185 -74156270 - AluSx SINE Alu -32 280 1 269 57 0 0 chr12 69630278 69630313 -74156142 + MADE1 DNA Mariner 2 36 -44 215 234 16 0 chr12 69630433 69630497 -74155958 + L2 LINE L2 2994 3058 -214 2164 94 3 3 chr12 69630677 69630974 -74155481 + AluSp SINE Alu 1 297 -16 2263 77 3 10 chr12 69630976 69631276 -74155179 + AluY SINE Alu 1 298 -13 303 161 0 0 chr12 69631558 69631614 -74154841 + (TA)n Simple_repeat Simple_repeat 1 56 0 406 293 0 0 chr12 69631803 69631919 -74154536 + AluSq/x SINE Alu 6 121 -181 24 0 0 70 chr12 69632325 69632368 -74154087 + AT_rich Low_complexity Low_complexity 1 40 0 306 193 277 0 chr12 69632538 69632621 -74153834 + MIR SINE MIR 101 206 -56 190 343 76 9 chr12 69632732 69632837 -74153618 + L2 LINE L2 3147 3258 -14 1320 65 5 89 chr12 69632862 69632912 -74153543 + HSMAR2 DNA Mariner 1 54 -1248 1586 200 40 0 chr12 69632912 69633212 -74153243 + AluJb SINE Alu 1 312 0 1320 65 5 89 chr12 69633212 69633375 -74153080 + HSMAR2 DNA Mariner 54 196 -1106 1013 163 0 0 chr12 69633375 69633553 -74152902 - AluSg/x SINE Alu 0 312 135 1027 94 34 0 chr12 69633553 69633702 -74152753 + HSMAR2 DNA Mariner 185 338 -964 719 155 69 0 chr12 69633703 69633819 -74152636 + FLAM_C SINE Alu 2 125 -18 1036 189 0 0 chr12 69633849 69634018 -74152437 + HSMAR2 DNA Mariner 333 501 -801 1494 183 17 3 chr12 69634018 69634313 -74152142 - AluJb SINE Alu -13 299 1 1150 112 27 5 chr12 69634313 69634500 -74151955 - MSTB-int LTR MaLR -1460 191 1 2364 162 36 7 chr12 69634500 69634914 -74151541 - MSTB LTR MaLR 0 426 1 299 300 119 81 chr12 69636147 69636292 -74150163 + L2 LINE L2 1527 1665 -1649 1989 98 7 18 chr12 69636292 69636578 -74149877 + AluSx SINE Alu 1 283 -29 482 0 0 17 chr12 69636578 69636637 -74149818 + (CATA)n Simple_repeat Simple_repeat 4 61 0 299 300 119 81 chr12 69636637 69637427 -74149028 + L2 LINE L2 1664 2499 -815 1628 182 0 10 chr12 69637616 69637913 -74148542 - AluJo SINE Alu -8 304 11 2280 90 10 3 chr12 69638175 69638485 -74147970 - AluSx SINE Alu 0 312 1 2069 116 3 7 chr12 69638644 69638945 -74147510 - AluSx SINE Alu -12 300 1 1610 40 0 10 chr12 69639464 69639662 -74146793 - L1PA5 LINE L1 -1 6153 5958 234 176 77 143 chr12 69640423 69640477 -74145978 + MIR SINE MIR 168 215 -47 2209 78 0 10 chr12 69640477 69640786 -74145669 + AluY SINE Alu 1 306 -5 234 176 77 143 chr12 69640786 69640822 -74145633 + MIR SINE MIR 215 252 -10 524 207 45 0 chr12 69640904 69641015 -74145440 + AluJb SINE Alu 1 116 -196 207 114 0 0 chr12 69641018 69641053 -74145402 + (CA)n Simple_repeat Simple_repeat 2 36 0 1525 190 3 22 chr12 69641734 69642050 -74144405 + AluJo SINE Alu 1 310 -2 1496 150 35 0 chr12 69642288 69642548 -74143907 + AluJb SINE Alu 21 289 -23 2298 74 7 0 chr12 69642564 69642862 -74143593 + AluY SINE Alu 1 300 -11 953 170 177 90 chr12 69642883 69643027 -74143428 + AluJo SINE Alu 1 131 -171 2283 88 3 10 chr12 69643027 69643335 -74143120 + AluSc SINE Alu 1 306 -3 953 170 177 90 chr12 69643335 69643467 -74142988 + AluJo SINE Alu 131 301 -1 2199 104 3 0 chr12 69643548 69643846 -74142609 + AluSg SINE Alu 1 299 -11 631 265 115 5 chr12 69644366 69644566 -74141889 - MIR SINE MIR -1 261 40 2145 94 0 0 chr12 69644567 69644853 -74141602 - AluSc SINE Alu -2 307 22 1910 156 0 0 chr12 69644853 69645154 -74141301 - AluJb SINE Alu -11 301 1 2170 42 49 3 chr12 69645367 69645653 -74140802 - AluY SINE Alu -12 299 1 1908 110 11 14 chr12 69645692 69646015 -74140440 - AluSx SINE Alu 0 322 1 2337 66 10 0 chr12 69646337 69646638 -74139817 + AluSp SINE Alu 1 304 -9 644 288 180 18 chr12 69646645 69647100 -74139355 - MLT1L LTR MaLR -68 547 19 482 264 6 69 chr12 69647132 69647291 -74139164 - MIR SINE MIR -30 232 84 1755 103 8 4 chr12 69647307 69647569 -74138886 + AluSx SINE Alu 46 308 -4 293 107 0 18 chr12 69647605 69647661 -74138794 + (TG)n Simple_repeat Simple_repeat 2 56 0 321 220 34 0 chr12 69647662 69647721 -74138734 - MER34C LTR ERV1 -337 248 188 623 179 0 68 chr12 69647722 69647839 -74138616 + FLAM_A SINE Alu 1 109 -33 720 191 25 32 chr12 69647872 69648029 -74138426 - MER34C LTR ERV1 -390 195 40 25 31 0 0 chr12 69648132 69648164 -74138291 + AT_rich Low_complexity Low_complexity 1 32 0 1924 150 0 3 chr12 69648290 69648583 -74137872 - AluJo SINE Alu -20 292 1 1877 102 0 0 chr12 69648598 69648854 -74137601 - AluSx SINE Alu -7 305 50 1754 148 4 7 chr12 69649127 69649405 -74137050 + AluSx SINE Alu 15 291 -21 323 160 80 60 chr12 69649467 69649567 -74136888 + L1ME1 LINE L1 6054 6155 -11 1410 171 99 0 chr12 69649700 69649799 -74136656 + AluJo SINE Alu 7 95 -217 221 0 0 33 chr12 69649799 69649829 -74136626 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1410 171 99 0 chr12 69649829 69649992 -74136463 + AluJo SINE Alu 95 295 -17 1017 257 145 15 chr12 69649993 69650394 -74136061 + L1MC4a LINE L1 5461 5913 -1895 1478 186 3 3 chr12 69650441 69650726 -74135729 + AluSx SINE Alu 9 293 -19 2206 101 0 7 chr12 69651377 69651685 -74134770 + AluSg SINE Alu 1 306 -4 202 208 182 26 chr12 69651829 69651906 -74134549 + L3 LINE CR1 660 748 -829 431 336 148 20 chr12 69652043 69652388 -74134067 + L3 LINE CR1 1074 1462 -115 199 210 76 101 chr12 69652562 69652602 -74133853 + MER5B DNA MER1_type 21 60 -118 2397 67 0 0 chr12 69652602 69652902 -74133553 + AluY SINE Alu 1 300 -11 199 210 76 101 chr12 69652902 69652980 -74133475 + MER5B DNA MER1_type 60 136 -42 1581 166 3 14 chr12 69653007 69653297 -74133158 + AluJo SINE Alu 23 309 -3 1775 105 0 0 chr12 69653319 69653558 -74132897 + AluSc SINE Alu 1 239 -70 814 148 0 0 chr12 69654250 69654378 -74132077 + FLAM_C SINE Alu 1 128 -15 2128 98 0 7 chr12 69654389 69654684 -74131771 + AluSg SINE Alu 1 293 -17 2015 123 13 0 chr12 69654686 69654986 -74131469 + AluSx SINE Alu 1 304 -8 2012 83 53 40 chr12 69654986 69655287 -74131168 + AluSp SINE Alu 1 306 -7 375 203 0 0 chr12 69655934 69656003 -74130452 - MER103 DNA DNA -45 121 53 959 113 0 0 chr12 69656004 69656137 -74130318 + AluJb SINE Alu 1 133 -179 834 205 0 0 chr12 69656860 69657026 -74129429 - AluSg/x SINE Alu -18 294 129 1402 178 52 28 chr12 69658636 69658922 -74127533 + AluJo SINE Alu 1 293 -9 2156 122 0 0 chr12 69658927 69659238 -74127217 + AluSx SINE Alu 1 311 -1 888 72 158 0 chr12 69659239 69659391 -74127064 + L1MA3 LINE L1 6130 6305 0 486 295 62 16 chr12 69660397 69660590 -74125865 - MIR SINE MIR -36 226 25 180 0 0 0 chr12 69661539 69661559 -74124896 + (T)n Simple_repeat Simple_repeat 1 20 0 2254 62 42 0 chr12 69662481 69662770 -74123685 + AluY SINE Alu 1 301 -10 1487 187 23 19 chr12 69662878 69663188 -74123267 + AluJb SINE Alu 1 311 -1 210 346 59 22 chr12 69663255 69663391 -74123064 - MIR SINE MIR -11 251 111 199 325 65 0 chr12 69663487 69663564 -74122891 + MIR SINE MIR 68 149 -59 1065 137 6 6 chr12 69663965 69664140 -74122315 + AluSg/x SINE Alu 130 304 -8 353 245 53 21 chr12 69664617 69664711 -74121744 - L2 LINE L2 -7 3306 3210 232 310 86 9 chr12 69665419 69665535 -74120920 + MIR SINE MIR 103 227 -35 2150 178 110 7 chr12 69665569 69665979 -74120476 - MER66A LTR ERV1 0 478 27 192 310 127 40 chr12 69666152 69666343 -74120112 - MIR3 SINE MIR -41 221 5 441 116 0 14 chr12 69666957 69667026 -74119429 + AluS SINE Alu 2 69 -249 198 0 0 0 chr12 69667601 69667623 -74118832 + (A)n Simple_repeat Simple_repeat 1 22 0 1965 104 58 0 chr12 69667658 69667936 -74118519 + AluSx SINE Alu 1 294 -18 264 148 204 0 chr12 69668469 69668523 -74117932 - MIR SINE MIR -2 260 196 635 152 0 0 chr12 69668868 69668967 -74117488 - AluJb SINE Alu -4 308 210 405 277 53 48 chr12 69668968 69669016 -74117439 + L2 LINE L2 3113 3159 -154 1877 156 0 3 chr12 69669016 69669324 -74117131 - AluJb SINE Alu -4 308 2 405 277 53 48 chr12 69669324 69669463 -74116992 + L2 LINE L2 3159 3301 -12 392 169 15 0 chr12 69669585 69669650 -74116805 - AluJ/FLAM SINE Alu -236 66 1 449 272 24 16 chr12 69669653 69669778 -74116677 + MIR SINE MIR 129 254 -8 2077 102 7 13 chr12 69669779 69670082 -74116373 - AluSx SINE Alu -10 302 2 229 342 26 43 chr12 69670109 69670226 -74116229 + L2 LINE L2 3154 3268 -4 1829 164 0 3 chr12 69670259 69670571 -74115884 - AluSx SINE Alu -1 311 1 315 154 86 13 chr12 69671126 69671149 -74115306 - MER58 DNA MER1_type -147 194 174 1566 158 11 7 chr12 69671149 69671427 -74115028 - AluJb SINE Alu -10 302 24 315 154 86 13 chr12 69671427 69671476 -74114979 - MER58 DNA MER1_type -167 174 1 1022 252 97 91 chr12 69671480 69671926 -74114529 - L1M4 LINE L1 -1006 5140 4698 1643 76 5 0 chr12 69671926 69672137 -74114318 + AluSp SINE Alu 96 307 -6 1022 252 97 91 chr12 69672137 69672474 -74113981 - L1M4 LINE L1 -1448 4698 4365 1554 124 4 44 chr12 69672474 69672748 -74113707 - AluY SINE Alu -48 263 1 1022 252 97 91 chr12 69672748 69673095 -74113360 - L1M4 LINE L1 -1781 4365 4002 709 278 120 45 chr12 69673095 69673580 -74112875 - MLT1H LTR MaLR 0 549 29 581 210 25 37 chr12 69673631 69673690 -74112765 - L1M4 LINE L1 -2168 3978 3920 2060 113 0 26 chr12 69673690 69673999 -74112456 - AluSx SINE Alu -11 301 1 581 210 25 37 chr12 69673999 69674101 -74112354 - L1M4 LINE L1 -2226 3920 3819 873 246 162 14 chr12 69674101 69674443 -74112012 + MLT1F1 LTR MaLR 1 411 -182 213 209 15 60 chr12 69674448 69674515 -74111940 + MIR SINE MIR 183 246 -16 275 273 36 36 chr12 69674532 69674642 -74111813 + MIR SINE MIR 111 220 -42 1203 186 163 0 chr12 69674690 69674948 -74111507 - AluJb SINE Alu -11 301 2 707 216 0 0 chr12 69674986 69675111 -74111344 + AluJb SINE Alu 2 126 -186 503 301 70 16 chr12 69675351 69675468 -74110987 - L2 LINE L2 -1 3312 3203 1624 178 23 74 chr12 69675468 69675862 -74110593 - MLT1A2 LTR MaLR 0 374 1 503 301 70 16 chr12 69675862 69675888 -74110567 - L2 LINE L2 -110 3203 3180 180 0 0 0 chr12 69675888 69675908 -74110547 + (CA)n Simple_repeat Simple_repeat 1 20 0 503 301 70 16 chr12 69675908 69675949 -74110506 - L2 LINE L2 -133 3180 3117 2171 98 23 0 chr12 69676779 69677085 -74109370 - AluSq SINE Alu 0 313 1 2140 115 3 0 chr12 69678033 69678337 -74108118 - AluSp SINE Alu -8 305 1 562 264 50 0 chr12 69678571 69678730 -74107725 + MER91A DNA MER1_type 3 169 -27 2228 92 0 7 chr12 69679011 69679305 -74107150 + AluSg SINE Alu 1 292 -18 2268 97 0 3 chr12 69679688 69679999 -74106456 + AluSx SINE Alu 1 310 -2 229 204 0 41 chr12 69680363 69680412 -74106043 - L1M1 LINE L1 -6406 1159 1113 837 247 108 8 chr12 69680413 69680664 -74105791 - MLT1J2 LTR MaLR -140 310 35 2154 100 0 0 chr12 69681812 69682102 -74104353 - AluSx SINE Alu -22 290 1 1883 128 3 16 chr12 69682119 69682287 -74104168 - AluSx SINE Alu -11 301 137 1990 106 10 13 chr12 69682287 69682590 -74103865 - AluSx SINE Alu -10 302 1 1883 128 3 16 chr12 69682590 69682726 -74103729 - AluSx SINE Alu -175 137 1 2201 117 0 0 chr12 69682940 69683247 -74103208 + AluSx SINE Alu 1 307 -5 2305 98 3 0 chr12 69683339 69683645 -74102810 + AluSp SINE Alu 1 307 -6 231 244 90 13 chr12 69683978 69684056 -74102399 - L2 LINE L2 0 3313 3230 1745 166 7 0 chr12 69684379 69684674 -74101781 + AluSx SINE Alu 1 297 -15 2199 102 0 3 chr12 69684674 69684977 -74101478 + AluSc SINE Alu 1 303 -6 255 31 0 0 chr12 69684978 69685010 -74101445 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 856 286 78 41 chr12 69685201 69685556 -74100899 - L1ME4a LINE L1 -3 6118 5733 1760 134 22 53 chr12 69685556 69685877 -74100578 - AluJo SINE Alu -1 311 1 856 286 78 41 chr12 69685877 69686088 -74100367 - L1ME4a LINE L1 -388 5733 5531 629 179 116 0 chr12 69686617 69686729 -74099726 + FLAM_C SINE Alu 1 125 -8 184 77 26 103 chr12 69686868 69686907 -74099548 - MER5C DNA MER1_type -169 155 120 374 219 0 10 chr12 69687672 69687768 -74098687 + GA-rich Low_complexity Low_complexity 1 95 0 1914 124 34 0 chr12 69687770 69688061 -74098394 + AluSx SINE Alu 1 301 -11 879 179 17 0 chr12 69688065 69688238 -74098217 + AluYa5 SINE Alu 136 311 0 1967 109 0 4 chr12 69688693 69688968 -74097487 + AluJb SINE Alu 14 287 -25 274 321 46 9 chr12 69688988 69689097 -74097358 + MIR SINE MIR 150 262 0 215 154 26 0 chr12 69689206 69689245 -74097210 - MIR SINE MIR -93 115 76 343 39 20 0 chr12 69689689 69689740 -74096715 - L1PA10 LINE L1 -1 6167 6116 3460 67 2 0 chr12 69689756 69690189 -74096266 - L1PA10 LINE L1 -5 6163 5730 622 113 21 0 chr12 69690194 69690291 -74096164 - AluSp/q SINE Alu -3 310 212 1122 109 0 0 chr12 69690316 69690472 -74095983 + AluSg SINE Alu 1 156 -154 361 288 106 15 chr12 69690933 69691065 -74095390 - L3 LINE CR1 -5 1572 1429 1867 140 14 7 chr12 69691082 69691375 -74095080 + AluSx SINE Alu 1 295 -17 663 242 0 0 chr12 69691380 69691500 -74094955 - FLAM_A SINE Alu -13 120 1 2303 82 0 0 chr12 69691590 69691884 -74094571 + AluY SINE Alu 1 294 -17 509 206 38 30 chr12 69691896 69692027 -74094428 + FLAM_C SINE Alu 2 133 -10 523 93 13 0 chr12 69692276 69692351 -74094104 - Alu SINE Alu -234 76 1 1639 174 10 0 chr12 69692522 69692815 -74093640 + AluSx SINE Alu 1 296 -16 354 280 260 0 chr12 69693241 69693391 -74093064 + MIR SINE MIR 18 206 -56 190 343 76 9 chr12 69693502 69693607 -74092848 + L2 LINE L2 3147 3258 -14 1320 65 5 89 chr12 69693632 69693682 -74092773 + HSMAR2 DNA Mariner 1 54 -1248 1586 200 40 0 chr12 69693682 69693982 -74092473 + AluJb SINE Alu 1 312 0 1320 65 5 89 chr12 69693982 69694145 -74092310 + HSMAR2 DNA Mariner 54 196 -1106 998 174 0 0 chr12 69694145 69694323 -74092132 - AluSg/x SINE Alu 0 310 133 1027 94 34 0 chr12 69694323 69694472 -74091983 + HSMAR2 DNA Mariner 185 338 -964 719 155 69 0 chr12 69694473 69694589 -74091866 + FLAM_C SINE Alu 2 125 -18 1036 189 0 0 chr12 69694619 69694788 -74091667 + HSMAR2 DNA Mariner 333 501 -801 1554 180 17 0 chr12 69694788 69695082 -74091373 - AluJb SINE Alu -13 299 1 1150 112 27 5 chr12 69695082 69695269 -74091186 - MSTB-int LTR MaLR -1460 191 1 2364 162 36 7 chr12 69695269 69695683 -74090772 - MSTB LTR MaLR 0 426 1 2114 105 0 16 chr12 69697061 69697366 -74089089 + AluSx SINE Alu 1 300 -12 1856 163 0 0 chr12 69697578 69697879 -74088576 + AluJb SINE Alu 1 301 -11 2145 94 0 0 chr12 69697879 69698165 -74088290 + AluSc SINE Alu 22 307 -2 631 265 115 5 chr12 69698166 69698366 -74088089 + MIR SINE MIR 40 261 -1 2199 104 3 0 chr12 69698886 69699184 -74087271 - AluSg SINE Alu -11 299 1 953 170 177 90 chr12 69699265 69699397 -74087058 - AluJo SINE Alu -1 301 182 2283 88 3 10 chr12 69699397 69699705 -74086750 - AluSc SINE Alu -3 306 1 953 170 177 90 chr12 69699705 69699849 -74086606 - AluJo SINE Alu -120 182 1 2298 74 7 0 chr12 69699870 69700168 -74086287 - AluY SINE Alu -11 300 1 1496 150 35 0 chr12 69700184 69700444 -74086011 - AluJb SINE Alu -23 289 21 1733 168 3 19 chr12 69700682 69700997 -74085458 - AluSx SINE Alu -2 310 1 975 190 0 0 chr12 69701123 69701302 -74085153 - AluJb SINE Alu 0 312 134 1815 150 3 20 chr12 69701302 69701608 -74084847 - AluJb SINE Alu -11 301 1 256 127 141 28 chr12 69702088 69702159 -74084296 - LTR66 LTR ERVL -171 439 361 261 275 11 44 chr12 69703292 69703383 -74083072 - MIR SINE MIR -116 146 59 2390 81 10 0 chr12 69704655 69704964 -74081491 + AluSx SINE Alu 1 312 0 1670 175 0 10 chr12 69705226 69705523 -74080932 + AluJo SINE Alu 11 304 -8 309 299 94 86 chr12 69705712 69706492 -74079963 - L2 LINE L2 -815 2499 1714 419 0 0 19 chr12 69706502 69706554 -74079901 + (TATG)n Simple_repeat Simple_repeat 3 53 0 31 82 0 0 chr12 69706589 69706638 -74079817 + AT_rich Low_complexity Low_complexity 1 49 0 333 294 71 56 chr12 69706638 69706835 -74079620 - HAL1 LINE L1 -1206 1301 1102 386 226 116 34 chr12 69707202 69707348 -74079107 + MER103 DNA DNA 1 158 -8 1931 170 136 8 chr12 69707367 69707743 -74078712 + MSTB LTR MaLR 1 424 -2 33 25 0 0 chr12 69707858 69707898 -74078557 + AT_rich Low_complexity Low_complexity 1 40 0 1923 133 10 3 chr12 69708074 69708368 -74078087 + AluJb SINE Alu 1 296 -16 1210 301 83 79 chr12 69708513 69708964 -74077491 - L1M4 LINE L1 -1392 4754 4306 2096 117 3 0 chr12 69708964 69709272 -74077183 - AluSx SINE Alu -3 309 1 1210 301 83 79 chr12 69709272 69709356 -74077099 - L1M4 LINE L1 -1840 4306 4224 2628 7 0 3 chr12 69709356 69709653 -74076802 - AluYa5 SINE Alu -15 296 1 1210 301 83 79 chr12 69709653 69710062 -74076393 - L1M4 LINE L1 -1922 4224 3805 452 167 0 0 chr12 69710076 69710148 -74076307 + HAL1 LINE L1 1288 1359 -1148 706 199 0 8 chr12 69710172 69710303 -74076152 + FLAM_A SINE Alu 6 135 -7 476 288 23 8 chr12 69710364 69710496 -74075959 + HAL1 LINE L1 1666 1799 -708 332 252 12 20 chr12 69710596 69710747 -74075708 + G-rich Low_complexity Low_complexity 1 244 0 1016 162 0 120 chr12 69711583 69711842 -74074613 + AluJb SINE Alu 75 302 -10 956 171 0 0 chr12 69712098 69712250 -74074205 + AluJo SINE Alu 1 152 -160 1033 165 67 45 chr12 69712250 69712517 -74073938 + pTR5 LTR ERV1 745 1017 -1421 1090 282 88 50 chr12 69713202 69713718 -74072737 - L2 LINE L2 -57 3256 2761 2227 101 0 9 chr12 69713718 69714034 -74072421 + AluSq SINE Alu 1 313 0 1090 282 88 50 chr12 69714034 69714260 -74072195 - L2 LINE L2 -552 2761 2545 1775 159 0 23 chr12 69714260 69714568 -74071887 + AluJb SINE Alu 1 301 -11 1090 282 88 50 chr12 69714568 69714774 -74071681 - L2 LINE L2 -768 2545 2279 1859 112 0 73 chr12 69714850 69715200 -74071255 + AluSx SINE Alu 4 330 0 415 247 21 0 chr12 69715205 69715298 -74071157 + AluS SINE Alu 1 95 -208 1641 82 4 4 chr12 69715474 69715705 -74070750 - AluY SINE Alu -2 309 79 765 149 0 0 chr12 69715705 69715819 -74070636 - AluJ SINE Alu -16 296 183 794 131 8 8 chr12 69715827 69715949 -74070506 - AluJ SINE Alu -187 125 4 877 184 0 6 chr12 69716967 69717125 -74069330 - AluJb SINE Alu -18 294 138 4244 126 32 46 chr12 69717125 69718071 -74068384 - pTR5 LTR ERV1 -6 2432 1194 420 324 76 48 chr12 69918795 69919214 -73867241 + L1MEd LINE L1 484 930 -5286 23 0 0 0 chr12 69919835 69919858 -73866597 + AT_rich Low_complexity Low_complexity 1 23 0 1687 179 14 7 chr12 69919861 69920165 -73866290 + AluJo SINE Alu 1 306 0 23 33 0 0 chr12 69920365 69920395 -73866060 + AT_rich Low_complexity Low_complexity 1 30 0 281 227 53 0 chr12 69920444 69920519 -73865936 - MIR SINE MIR -136 126 48 2381 88 7 0 chr12 69922833 69923138 -73863317 - AluSx SINE Alu 0 312 6 22 0 0 0 chr12 69923926 69923948 -73862507 + AT_rich Low_complexity Low_complexity 1 22 0 600 191 0 0 chr12 69924212 69924322 -73862133 + FLAM_A SINE Alu 1 110 -32 343 285 23 34 chr12 69925290 69925509 -73860946 + GA-rich Low_complexity Low_complexity 1 216 0 290 250 19 29 chr12 69925616 69925720 -73860735 - MIR3 SINE MIR -1 207 105 295 313 96 0 chr12 69926076 69926191 -73860264 + MIR SINE MIR 19 144 -118 539 65 26 0 chr12 69926252 69926329 -73860126 + MADE1 DNA Mariner 1 79 -1 185 270 0 90 chr12 69926329 69926384 -73860071 + MIR SINE MIR 153 199 -63 1352 80 20 92 chr12 69926384 69926604 -73859851 - L1PA14 LINE L1 -3 6158 5956 2300 117 0 0 chr12 69926604 69926911 -73859544 - AluSx SINE Alu 0 312 6 1352 80 20 92 chr12 69926911 69926939 -73859516 - L1PA14 LINE L1 -205 5956 5928 185 270 0 90 chr12 69926939 69926966 -73859489 + MIR SINE MIR 199 227 -35 1089 167 233 0 chr12 69926997 69927242 -73859213 + AluJb SINE Alu 1 302 0 1941 121 39 23 chr12 69927257 69927529 -73858926 + AluSx SINE Alu 1 280 -32 210 37 0 0 chr12 69927529 69927556 -73858899 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1941 121 39 23 chr12 69927556 69927590 -73858865 + AluSx SINE Alu 280 312 0 398 299 45 0 chr12 69928479 69928613 -73857842 - MIR SINE MIR -13 249 110 337 284 128 0 chr12 69928628 69928776 -73857679 - MIR SINE MIR -1 261 95 419 309 70 57 chr12 69928776 69929006 -73857449 - MIR SINE MIR -3 259 27 1093 195 76 50 chr12 69929138 69929481 -73856974 + L1MC4 LINE L1 6955 7306 -736 40445 53 3 3 chr12 69929507 69932442 -73854013 - L1PA5 LINE L1 0 6154 3220 2363 88 0 0 chr12 69932442 69932737 -73853718 - AluY SINE Alu -16 295 1 40445 53 3 3 chr12 69932737 69935956 -73850499 - L1PA5 LINE L1 -2934 3220 1 1065 227 77 11 chr12 69935956 69936308 -73850147 + L1MC4 LINE L1 7293 7667 -375 33 0 0 0 chr12 69936342 69936375 -73850080 + AT_rich Low_complexity Low_complexity 1 33 0 242 113 0 19 chr12 69936375 69936428 -73850027 + (GA)n Simple_repeat Simple_repeat 2 53 0 308 72 0 58 chr12 69936429 69936498 -73849957 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 0 0 0 chr12 69936555 69936576 -73849879 + AT_rich Low_complexity Low_complexity 1 21 0 262 287 165 24 chr12 69936602 69936766 -73849689 + MIR SINE MIR 70 256 -6 2157 261 152 28 chr12 69937327 69938381 -73848074 - L2 LINE L2 -129 3184 2007 824 140 51 117 chr12 69938435 69938692 -73847763 + MLT1A1 LTR MaLR 126 365 0 229 275 33 25 chr12 69938718 69938838 -73847617 + MLT1H LTR MaLR 50 170 -379 321 26 0 0 chr12 69939293 69939331 -73847124 + (TG)n Simple_repeat Simple_repeat 1 38 0 313 208 0 0 chr12 69939373 69939426 -73847029 + L3 LINE CR1 1524 1576 -1 332 118 15 0 chr12 69939956 69940024 -73846431 + (TC)n Simple_repeat Simple_repeat 1 69 0 189 229 0 0 chr12 69940023 69940071 -73846384 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 1066 154 6 17 chr12 69940168 69940343 -73846112 - AluJo SINE Alu -27 285 113 339 206 146 75 chr12 69941019 69941272 -73845183 + L1MC4a LINE L1 5764 6034 -1774 755 123 9 9 chr12 69941489 69941603 -73844852 + FLAM_C SINE Alu 5 118 -15 184 89 22 22 chr12 69941610 69941655 -73844800 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 252 311 37 15 chr12 69941664 69941799 -73844656 + MIR SINE MIR 70 207 -55 1948 115 4 18 chr12 69941886 69942165 -73844290 - AluSq SINE Alu -9 304 30 437 261 36 36 chr12 69942596 69942761 -73843694 - MER91B DNA MER1_type -11 179 15 2197 104 0 10 chr12 69945326 69945657 -73840798 + AluSx SINE Alu 1 328 0 2116 150 18 32 chr12 69946056 69946495 -73839960 + L1MB4 LINE L1 5746 6178 -2 380 252 119 64 chr12 69946981 69947358 -73839097 + L1ME4a LINE L1 5515 5912 -209 278 204 122 0 chr12 69947394 69947492 -73838963 + L1ME4a LINE L1 6010 6119 -2 377 267 155 37 chr12 69947863 69948024 -73838431 + MIR3 SINE MIR 20 199 -9 728 217 38 16 chr12 69948615 69948799 -73837656 - MER58A DNA MER1_type 0 224 37 1307 188 61 95 chr12 69948810 69949220 -73837235 - MSTD LTR MaLR 0 396 1 257 321 0 0 chr12 69949436 69949517 -73836938 + GA-rich Low_complexity Low_complexity 4 84 0 1540 192 36 7 chr12 69949646 69949922 -73836533 + AluJb SINE Alu 7 290 -22 27 0 0 0 chr12 69949931 69949958 -73836497 + AT_rich Low_complexity Low_complexity 1 27 0 513 234 75 124 chr12 69950563 69950828 -73835627 - L3b LINE CR1 -70 1513 1262 1638 170 55 12 chr12 69952206 69952405 -73834050 - MER2 DNA MER2_type 0 345 125 6131 118 98 26 chr12 69952405 69953156 -73833299 + Tigger3b DNA MER2_type 1 865 -2163 2315 103 3 0 chr12 69953156 69953456 -73832999 + AluSp SINE Alu 1 301 -12 6131 118 98 26 chr12 69953456 69953851 -73832604 + Tigger3b DNA MER2_type 865 1230 -1 1638 170 55 12 chr12 69953851 69953981 -73832474 - MER2 DNA MER2_type -220 125 2 348 340 130 0 chr12 69953984 69954169 -73832286 - L3 LINE CR1 -64 1513 1305 500 260 166 6 chr12 69954178 69954347 -73832108 + MIR SINE MIR 64 259 -3 545 273 72 34 chr12 69955415 69955624 -73830831 + MIR SINE MIR 2 218 -44 2014 124 4 0 chr12 69956355 69956630 -73829825 - AluSq SINE Alu -11 302 27 1919 124 14 3 chr12 69956850 69957140 -73829315 + AluJb SINE Alu 10 302 -10 310 276 82 20 chr12 69957638 69957736 -73828719 + L2 LINE L2 3155 3258 -14 2149 114 14 0 chr12 69958370 69958660 -73827795 - AluSg SINE Alu -16 294 1 350 289 0 0 chr12 69959947 69960023 -73826432 + L2 LINE L2 3191 3266 -6 322 276 104 30 chr12 69959998 69960132 -73826323 - L2 LINE L2 -7 3306 3163 * 863 200 7 0 chr12 69960164 69960319 -73826136 + FAM SINE Alu 18 173 -12 838 316 81 6 chr12 69960353 69960710 -73825745 - L2 LINE L2 -570 2744 2361 605 243 90 118 chr12 69960733 69961278 -73825177 + HAL1 LINE L1 561 1085 -1422 2541 71 0 0 chr12 69961278 69961589 -73824866 + AluY SINE Alu 1 311 0 605 243 90 118 chr12 69961589 69961723 -73824732 + HAL1 LINE L1 1085 1221 -1286 3621 168 89 35 chr12 69961739 69961884 -73824571 + L1MB5 LINE L1 5254 5390 -784 2268 114 7 0 chr12 69961884 69962191 -73824264 + AluSx SINE Alu 1 309 -3 3621 168 89 35 chr12 69962191 69962910 -73823545 + L1MB5 LINE L1 5390 6165 -9 477 321 157 24 chr12 69962952 69963335 -73823120 - L2 LINE L2 -1497 1817 1384 875 189 6 30 chr12 69963934 69964103 -73822352 + FRAM SINE Alu 1 165 -1 2497 60 0 0 chr12 69964619 69964920 -73821535 - AluY SINE Alu -10 301 1 195 286 242 22 chr12 69965023 69965436 -73821019 + L2 LINE L2 2551 3062 -251 186 279 66 0 chr12 69965501 69965562 -73820893 + L2 LINE L2 3183 3247 -66 393 218 45 1 chr12 69966431 69966549 -73819906 + L1MA10 LINE L1 6051 6333 -1 240 365 103 13 chr12 69966721 69966877 -73819578 + MIR SINE MIR 24 193 -69 2232 105 7 0 chr12 69968307 69968601 -73817854 - AluSx SINE Alu -16 296 1 525 121 121 33 chr12 69968818 69969018 -73817437 - Charlie1 DNA MER1_type -4 2757 2490 418 278 74 28 chr12 69969140 69969316 -73817139 - MIR SINE MIR -61 201 18 2485 127 13 3 chr12 69969454 69969840 -73816615 + MLT1B LTR MaLR 1 390 0 2353 95 0 0 chr12 69970389 69970684 -73815771 - AluSc SINE Alu -14 295 1 25 0 0 0 chr12 69971400 69971425 -73815030 + AT_rich Low_complexity Low_complexity 1 25 0 4682 229 82 36 chr12 69972350 69973611 -73812844 + L1MEc LINE L1 41 1243 -4972 694 167 53 0 chr12 69973611 69973725 -73812730 + FLAM_A SINE Alu 1 120 -13 4682 229 82 36 chr12 69973725 69975057 -73811398 + L1MEc LINE L1 1243 2831 -3384 180 0 0 0 chr12 69975057 69975077 -73811378 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4682 229 82 36 chr12 69975077 69975128 -73811327 + L1MEc LINE L1 2831 2878 -3337 1447 221 115 19 chr12 69975367 69975784 -73810671 - LTR40b LTR ERVL 0 462 6 435 246 97 0 chr12 69976369 69976483 -73809972 + MER63 DNA MER1_type 1 751 -311 194 368 128 8 chr12 69977061 69977194 -73809261 - L2 LINE L2 -571 2743 2595 361 361 39 23 chr12 69977475 69977785 -73808670 + L1MEd LINE L1 441 755 -5364 6550 25 6 375 chr12 69980021 69982177 -73804278 + SVA Other Other 28 1386 0 418 278 74 28 chr12 69982242 69982418 -73804037 - MIR SINE MIR -61 201 18 2485 127 13 3 chr12 69982556 69982942 -73803513 + MLT1B LTR MaLR 1 390 0 2353 95 0 0 chr12 69983491 69983786 -73802669 - AluSc SINE Alu -14 295 1 25 0 0 0 chr12 69984502 69984527 -73801928 + AT_rich Low_complexity Low_complexity 1 25 0 4210 239 70 43 chr12 69985452 69986713 -73799742 + L1MEc LINE L1 41 1367 -5029 694 167 53 0 chr12 69986713 69986827 -73799628 + FLAM_A SINE Alu 1 120 -13 4210 239 70 43 chr12 69986827 69987380 -73799075 + L1MEc LINE L1 1367 1904 -4492 24 32 0 0 chr12 69987733 69987764 -73798691 + AT_rich Low_complexity Low_complexity 1 31 0 643 295 121 36 chr12 69988965 69989379 -73797076 + MLT1J LTR MaLR 20 468 -43 2026 140 0 13 chr12 69989772 69990086 -73796369 + AluJo SINE Alu 1 310 -2 447 150 0 12 chr12 69990261 69990341 -73796114 - Tigger5 DNA MER2_type 0 2323 2245 189 107 0 0 chr12 69990463 69990491 -73795964 + (TCTA)n Simple_repeat Simple_repeat 4 31 0 204 40 0 0 chr12 69990985 69991010 -73795445 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 1844 152 7 7 chr12 69991037 69991326 -73795129 - AluJb SINE Alu -21 291 3 1673 173 10 27 chr12 69991847 69992148 -73794307 - AluJo SINE Alu -12 300 5 494 275 6 39 chr12 69992521 69992681 -73793774 - MIR3 SINE MIR -7 201 48 22 35 0 0 chr12 69993050 69993079 -73793376 + AT_rich Low_complexity Low_complexity 1 29 0 185 348 114 79 chr12 69994771 69995061 -73791394 + L2 LINE L2 2950 3249 -23 410 188 0 0 chr12 69995844 69995924 -73790531 - FAM SINE Alu -94 91 12 225 0 0 0 chr12 69995949 69995974 -73790481 + (GA)n Simple_repeat Simple_repeat 1 25 0 1742 156 30 0 chr12 69995975 69996245 -73790210 - AluJb SINE Alu -34 278 1 376 315 125 5 chr12 69996380 69996580 -73789875 + L1ME4a LINE L1 5893 6116 -5 1357 274 157 13 chr12 69996848 69997403 -73789052 + L2 LINE L2 2319 2953 -361 1613 226 77 29 chr12 69997403 69997596 -73788859 + MLT1F1 LTR MaLR 56 238 -329 836 206 44 13 chr12 69997596 69997824 -73788631 - MER106A DNA MER1_type 0 236 2 1613 226 77 29 chr12 69997824 69998136 -73788319 + MLT1F1 LTR MaLR 238 548 -19 486 260 79 26 chr12 69998148 69998555 -73787900 + MLT1F1-int LTR MaLR 2 551 -820 2452 79 0 0 chr12 69998558 69998863 -73787592 + AluY SINE Alu 1 305 -6 2286 73 10 33 chr12 69998972 69999274 -73787181 + AluSc SINE Alu 1 295 -14 2549 167 73 49 chr12 69999694 70000245 -73786210 + MLT1F1 LTR MaLR 1 564 -3 622 259 117 36 chr12 70000522 70000595 -73785860 + L1ME LINE L1 5383 5449 -672 982 236 37 0 chr12 70000595 70000811 -73785644 + MER58A DNA MER1_type 1 224 0 622 259 117 36 chr12 70000811 70001123 -73785332 + L1ME LINE L1 5449 5799 -322 21 0 0 0 chr12 70001263 70001284 -73785171 + AT_rich Low_complexity Low_complexity 1 21 0 1348 142 45 39 chr12 70001372 70001709 -73784746 - SVA Other Other -616 770 432 1875 136 28 7 chr12 70001858 70002145 -73784310 - AluSg SINE Alu -17 293 1 328 250 0 0 chr12 70002416 70002484 -73783971 + AluJ/FLAM SINE Alu 1 68 -234 237 268 0 0 chr12 70002539 70002595 -73783860 - MIR SINE MIR -112 150 95 835 174 41 6 chr12 70002804 70002976 -73783479 + MER44D DNA MER2_type 1 448 -161 922 209 109 8 chr12 70003111 70003434 -73783021 + MER65C LTR ERV1 34 451 -10 24 0 0 0 chr12 70003616 70003640 -73782815 + AT_rich Low_complexity Low_complexity 1 24 0 2382 113 22 11 chr12 70003955 70004326 -73782129 - THE1C LTR MaLR 0 375 1 5037 180 51 20 chr12 70004396 70004806 -73781649 + L1MB2 LINE L1 3586 3982 -2164 2195 137 103 2 chr12 70004806 70005215 -73781240 - LTR47A LTR ERVL -2 450 1 5037 180 51 20 chr12 70005215 70006016 -73780439 + L1MB2 LINE L1 3982 4835 -1311 950 195 0 0 chr12 70006031 70006190 -73780265 - AluJb SINE Alu -14 298 140 581 209 64 6 chr12 70006194 70006366 -73780089 - L1M4 LINE L1 -779 5367 5186 1677 191 70 6 chr12 70006372 70006789 -73779666 - L1M LINE L1 -830 5316 4883 2002 170 3 3 chr12 70006794 70007106 -73779349 + AluJb SINE Alu 1 312 0 4962 138 55 9 chr12 70007116 70008037 -73778418 + L1MC1 LINE L1 5354 6317 -16 3527 142 51 28 chr12 70008028 70008549 -73777906 + L1MB2 LINE L1 5315 5859 -312 * 1958 145 3 7 chr12 70008549 70008852 -73777603 + AluJb SINE Alu 1 302 -10 3527 142 51 28 chr12 70008852 70009070 -73777385 + L1MB2 LINE L1 5859 6071 -100 1796 171 59 3 chr12 70009075 70009449 -73777006 + MER57A LTR ERV1 9 403 0 659 73 10 0 chr12 70009450 70009546 -73776909 + L1MB2 LINE L1 6070 6166 -5 2406 63 7 7 chr12 70010807 70011106 -73775349 - AluSq SINE Alu -14 299 1 216 136 0 45 chr12 70011259 70011303 -73775152 - MIR SINE MIR 0 262 221 * 250 307 119 34 chr12 70011299 70011475 -73774980 - L2 LINE L2 -226 3046 2856 534 149 8 6 chr12 70011939 70012194 -73774261 - AluJb SINE Alu -8 304 1 657 270 66 42 chr12 70012475 70012862 -73773593 + L1ME3A LINE L1 4951 5355 -807 2318 99 13 0 chr12 70012862 70013164 -73773291 + AluSp SINE Alu 4 309 -4 657 270 66 42 chr12 70013164 70013342 -73773113 + L1ME3A LINE L1 5355 5527 -635 2138 231 2 25 chr12 70013347 70013823 -73772632 + MER45B DNA AcHobo 2 466 -574 1381 184 40 29 chr12 70013823 70013977 -73772478 - AluJo SINE Alu -17 295 135 2066 99 14 10 chr12 70013977 70014269 -73772186 - AluSq SINE Alu -18 295 3 1381 184 40 29 chr12 70014269 70014386 -73772069 - AluJo SINE Alu -177 135 21 2309 88 3 3 chr12 70014396 70014701 -73771754 - AluSc SINE Alu -4 305 1 1474 181 47 9 chr12 70014708 70015029 -73771426 + MER45B DNA AcHobo 467 799 -241 8254 109 49 17 chr12 70015029 70016347 -73770108 + SVA Other Other 27 1386 0 1324 120 5 0 chr12 70016374 70016565 -73769890 + AluSp SINE Alu 121 312 -1 223 250 50 0 chr12 70016582 70016642 -73769813 + MIR SINE MIR 151 213 -49 980 158 83 4 chr12 70016651 70016879 -73769576 + MER45B DNA AcHobo 786 1031 -9 1323 255 68 53 chr12 70016885 70017474 -73768981 + L1ME3A LINE L1 5560 6157 -13 894 273 65 48 chr12 70018043 70018399 -73768056 + MER21B LTR ERV1 345 706 -157 307 175 225 0 chr12 70018411 70018491 -73767964 + MER21B LTR ERV1 657 754 -109 232 286 16 0 chr12 70018503 70018566 -73767889 + MIR SINE MIR 199 262 0 256 317 107 86 chr12 70018593 70018818 -73767637 - L2 LINE L2 -1 3271 3035 2124 191 26 11 chr12 70018818 70019278 -73767177 - MLT1C LTR MaLR 0 467 1 256 317 107 86 chr12 70019278 70019390 -73767065 - L2 LINE L2 -237 3035 2927 277 322 137 21 chr12 70019566 70019895 -73766560 - L2 LINE L2 -958 2356 1990 1370 181 9 151 chr12 70020234 70020670 -73765785 + MLT1A2 LTR MaLR 1 374 0 2413 96 0 0 chr12 70020720 70021022 -73765433 - AluSx SINE Alu -8 304 3 223 271 43 0 chr12 70021179 70021249 -73765206 + MIR3 SINE MIR 122 194 -14 2652 48 0 3 chr12 70021367 70021679 -73764776 + AluY SINE Alu 1 311 0 257 271 43 64 chr12 70021889 70022029 -73764426 - L1ME4a LINE L1 -4 6117 5981 209 217 50 0 chr12 70022126 70022186 -73764269 + (TA)n Simple_repeat Simple_repeat 2 64 0 1976 155 0 16 chr12 70022214 70022531 -73763924 - AluJb SINE Alu 0 312 1 872 141 0 40 chr12 70022604 70022753 -73763702 + FLAM_C SINE Alu 1 143 0 428 255 119 64 chr12 70023669 70023904 -73762551 - MLT1L LTR MaLR 0 615 368 7087 251 64 45 chr12 70024063 70024657 -73761798 - L2 LINE L2 -270 3002 2421 1608 188 21 7 chr12 70024657 70024817 -73761638 - AluJb SINE Alu -26 286 119 423 0 0 0 chr12 70024817 70024864 -73761591 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1608 188 21 7 chr12 70024864 70024985 -73761470 - AluJb SINE Alu -193 119 1 7087 251 64 45 chr12 70024985 70025632 -73760823 - L2 LINE L2 -851 2421 1788 3265 33 0 0 chr12 70025632 70025992 -73760463 + L1PA4 LINE L1 5793 6152 -3 7087 251 64 45 chr12 70025992 70026991 -73759464 - L2 LINE L2 -1484 1788 809 204 40 0 0 chr12 70026991 70027016 -73759439 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 276 30 0 0 chr12 70027015 70027048 -73759407 + (TG)n Simple_repeat Simple_repeat 2 34 0 7087 251 64 45 chr12 70027016 70027053 -73759402 - L2 LINE L2 -2463 809 774 3592 89 7 0 chr12 70027053 70027515 -73758940 - L1PA11 LINE L1 -1 6173 5709 7087 251 64 45 chr12 70027515 70027733 -73758722 - L2 LINE L2 -2498 774 484 253 174 35 105 chr12 70027733 70027819 -73758636 + Charlie8 DNA MER1_type 95 174 -2243 1785 152 27 3 chr12 70027981 70028278 -73758177 + AluJb SINE Alu 1 304 -8 393 86 0 0 chr12 70028278 70028336 -73758119 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 312 257 67 28 chr12 70028969 70029148 -73757307 + L1ME4a LINE L1 5936 6121 0 1722 147 6 19 chr12 70029157 70029469 -73756986 + AluJo SINE Alu 3 310 -2 666 224 58 54 chr12 70031104 70031309 -73755146 - MIR SINE MIR -54 208 3 2310 207 96 6 chr12 70031431 70031943 -73754512 - MER89 LTR ERV1 -1 558 1 361 222 32 47 chr12 70032448 70032598 -73753857 - MER5A DNA MER1_type -30 159 1 29 47 0 0 chr12 70033055 70033098 -73753357 + AT_rich Low_complexity Low_complexity 1 43 0 749 283 34 8 chr12 70033159 70033396 -73753059 - MIR SINE MIR 0 262 20 534 166 64 47 chr12 70033420 70033435 -73753020 - L1MC1 LINE L1 -1 7768 7755 2450 82 0 16 chr12 70033435 70033752 -73752703 - AluSp SINE Alu -1 312 1 534 166 64 47 chr12 70033752 70034367 -73752088 - L1MC1 LINE L1 -14 7755 6133 1603 161 80 7 chr12 70034377 70034663 -73751792 - AluJb SINE Alu -3 309 3 2284 236 200 68 chr12 70034731 70035005 -73751450 + L2 LINE L2 1722 1958 -1355 2249 94 3 3 chr12 70035005 70035304 -73751151 + AluSx SINE Alu 2 300 -12 2284 236 200 68 chr12 70035304 70036112 -73750343 + L2 LINE L2 1958 3044 -269 2093 119 13 3 chr12 70036112 70036414 -73750041 - AluSq SINE Alu -8 305 1 2284 236 200 68 chr12 70036414 70036725 -73749730 + L2 LINE L2 3044 3313 0 211 207 253 11 chr12 70038698 70038785 -73747670 - L2 LINE L2 -6 3307 3200 2083 125 0 7 chr12 70039231 70039527 -73746928 + AluSq SINE Alu 1 294 -19 297 195 206 62 chr12 70040104 70040254 -73746201 + MER5A DNA MER1_type 5 187 -2 2263 99 0 32 chr12 70040541 70040855 -73745600 + AluSx SINE Alu 1 304 -8 1350 184 9 151 chr12 70040905 70041341 -73745114 - MLT1A2 LTR MaLR 0 374 1 369 290 152 34 chr12 70041976 70042245 -73744210 - L2 LINE L2 -40 3273 2973 2014 130 3 3 chr12 70042303 70042595 -73743860 + AluSx SINE Alu 1 292 -20 1107 95 0 20 chr12 70042621 70042769 -73743686 + AluY SINE Alu 1 145 -166 399 266 23 8 chr12 70042775 70042903 -73743552 + CT-rich Low_complexity Low_complexity 4 133 0 432 247 13 7 chr12 70042905 70043055 -73743400 + C-rich Low_complexity Low_complexity 3 153 0 196 200 29 0 chr12 70043087 70043157 -73743298 + CT-rich Low_complexity Low_complexity 1 72 0 487 203 16 57 chr12 70043262 70043385 -73743070 + FRAM SINE Alu 44 161 -15 280 238 62 38 chr12 70044816 70044896 -73741559 - L2 LINE L2 -31 3282 3201 187 388 25 0 chr12 70045767 70045847 -73740608 + MIR SINE MIR 130 211 -51 254 256 45 77 chr12 70046297 70046453 -73740002 - L2 LINE L2 -5 3308 3158 1988 146 7 13 chr12 70048278 70048586 -73737869 - AluJb SINE Alu -6 306 1 202 289 12 36 chr12 70049094 70049177 -73737278 + L2 LINE L2 3009 3089 -183 213 188 0 0 chr12 70049210 70049242 -73737213 + L2 LINE L2 3227 3258 -14 550 224 35 25 chr12 70049739 70049909 -73736546 - MLT1I LTR MaLR 0 409 275 2025 129 0 21 chr12 70050357 70050643 -73735812 - AluSx SINE Alu -30 282 3 3854 219 113 46 chr12 70051377 70052018 -73734437 + L1MC4a LINE L1 6217 6814 -1181 1560 168 0 96 chr12 70052018 70052363 -73734092 + AluJb SINE Alu 1 312 0 3854 219 113 46 chr12 70052363 70052488 -73733967 + L1MC4a LINE L1 6814 6929 -1066 210 118 0 0 chr12 70052488 70052522 -73733933 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3854 219 113 46 chr12 70052522 70053090 -73733365 + L1MC4a LINE L1 6929 7912 -83 378 0 0 0 chr12 70054307 70054349 -73732106 + (CA)n Simple_repeat Simple_repeat 1 42 0 5910 224 34 22 chr12 70055723 70056717 -73729738 - L1M4 LINE L1 -1953 4193 3172 2012 146 0 3 chr12 70056717 70057019 -73729436 + AluSx SINE Alu 1 301 -11 5910 224 34 22 chr12 70057019 70057584 -73728871 - L1M4 LINE L1 -2974 3172 2615 324 48 0 0 chr12 70057853 70057895 -73728560 + (CA)n Simple_repeat Simple_repeat 2 43 0 2355 104 0 0 chr12 70058007 70058306 -73728149 + AluSx SINE Alu 1 299 -13 1987 115 7 30 chr12 70058320 70058616 -73727839 + AluSx SINE Alu 11 299 -13 33 25 0 0 chr12 70058694 70058734 -73727721 + AT_rich Low_complexity Low_complexity 1 40 0 2125 138 0 0 chr12 70061358 70061656 -73724799 + AluSx SINE Alu 1 298 -14 298 306 149 0 chr12 70062026 70062147 -73724308 - L2 LINE L2 -15 3257 3119 2889 74 3 11 chr12 70062222 70062589 -73723866 + L1PA8 LINE L1 5807 6170 -2 1971 88 58 14 chr12 70062603 70062897 -73723558 - THE1B LTR MaLR -57 307 1 2088 165 88 9 chr12 70062897 70063316 -73723139 + L1MC1 LINE L1 5882 6333 0 196 306 48 0 chr12 70063357 70063419 -73723036 + L2 LINE L2 3240 3304 -9 260 316 46 46 chr12 70063439 70063635 -73722820 - L2 LINE L2 -252 3020 2825 1877 125 0 57 chr12 70063772 70064069 -73722386 + AluSx SINE Alu 1 280 -32 405 0 0 0 chr12 70064070 70064115 -73722340 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 311 281 32 97 chr12 70064195 70064380 -73722075 + MER5B DNA MER1_type 6 178 0 331 205 48 24 chr12 70065058 70065141 -73721314 + L2 LINE L2 3188 3272 0 423 0 0 0 chr12 70065354 70065401 -73721054 + (CA)n Simple_repeat Simple_repeat 1 47 0 254 310 50 10 chr12 70065586 70065686 -73720769 - MER5A DNA MER1_type -77 112 9 357 325 17 8 chr12 70065727 70065847 -73720608 - MIR SINE MIR -55 153 33 241 364 30 0 chr12 70066031 70066130 -73720325 - MIR3 SINE MIR -9 199 98 214 265 0 29 chr12 70066122 70066190 -73720265 + MIR SINE MIR 187 252 -10 * 775 299 70 14 chr12 70067843 70068198 -73718257 - L1MC/D LINE L1 -2009 5799 5425 8263 164 26 16 chr12 70068210 70068605 -73717850 - L1MA9 LINE L1 -22 6290 5900 303 28 0 0 chr12 70068605 70068641 -73717814 + (TG)n Simple_repeat Simple_repeat 2 37 0 8263 164 26 16 chr12 70068641 70068787 -73717668 - L1MA9 LINE L1 -412 5900 5757 2390 128 36 20 chr12 70068787 70069145 -73717310 + THE1B LTR MaLR 1 364 0 8263 164 26 16 chr12 70069145 70070082 -73716373 - L1MA9 LINE L1 -555 5757 4831 2880 7 0 0 chr12 70070082 70070391 -73716064 - AluYa5 SINE Alu -2 309 1 8263 164 26 16 chr12 70070391 70071319 -73715136 - L1MA9 LINE L1 -1481 4831 3913 1946 146 4 0 chr12 70071319 70071600 -73714855 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr12 70071603 70071626 -73714829 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8263 164 26 16 chr12 70071626 70072130 -73714325 - L1MA9 LINE L1 -2400 3912 3265 352 321 71 37 chr12 70072166 70072412 -73714043 - L1MC/D LINE L1 -744 5402 5143 3608 66 0 20 chr12 70072412 70072869 -73713586 - LTR7 LTR ERV1 -2 448 1 352 321 71 37 chr12 70072869 70072918 -73713537 - L1MC/D LINE L1 -1003 5143 5097 1656 113 28 41 chr12 70072949 70073240 -73713215 + AluSg SINE Alu 1 287 -23 815 139 8 16 chr12 70073271 70073400 -73713055 + AluSc SINE Alu 121 248 -61 428 252 70 21 chr12 70074216 70074359 -73712096 + MIR SINE MIR 47 196 -66 358 299 18 106 chr12 70074498 70074715 -73711740 + L2 LINE L2 3000 3197 -75 638 208 8 0 chr12 70074768 70074888 -73711567 + MIR SINE MIR 116 236 -26 241 118 0 0 chr12 70075130 70075164 -73711291 - MADE1 DNA Mariner 0 80 47 2417 83 90 28 chr12 70075173 70075560 -73710895 - SVA Other Other -972 414 4 187 232 161 0 chr12 70075864 70075920 -73710535 + L2 LINE L2 3244 3308 -5 328 230 180 0 chr12 70076155 70076255 -73710200 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr12 70076432 70076460 -73709995 + AT_rich Low_complexity Low_complexity 1 28 0 2204 109 3 3 chr12 70076537 70076840 -73709615 - AluSq SINE Alu -10 303 1 1090 153 33 42 chr12 70077560 70077609 -73708846 + AluJo SINE Alu 86 134 -178 2026 94 45 0 chr12 70077609 70077875 -73708580 + AluSg SINE Alu 1 278 -32 261 0 0 0 chr12 70077875 70077904 -73708551 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1090 153 33 42 chr12 70077904 70078068 -73708387 + AluJo SINE Alu 132 298 -14 219 114 0 0 chr12 70078068 70078103 -73708352 + (GA)n Simple_repeat Simple_repeat 1 35 0 2156 143 57 9 chr12 70078928 70079277 -73707178 + MER47A DNA MER2_type 1 366 0 686 308 68 31 chr12 70080546 70080900 -73705555 - LTR16A LTR ERVL -5 445 79 355 222 46 56 chr12 70081177 70081285 -73705170 + MIR SINE MIR 67 173 -89 805 148 0 23 chr12 70081518 70081646 -73704809 + AluSq/x SINE Alu 1 125 -187 395 345 124 38 chr12 70081679 70082097 -73704358 - L2 LINE L2 0 3272 2819 255 31 0 0 chr12 70083277 70083309 -73703146 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2599 37 0 0 chr12 70083525 70083821 -73702634 + AluY SINE Alu 1 296 -15 231 114 0 0 chr12 70084054 70084089 -73702366 + (T)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr12 70084113 70084134 -73702321 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 239 209 0 0 chr12 70085429 70085472 -73700983 + (CTG)n Simple_repeat Simple_repeat 1 43 0 40 37 0 0 chr12 70085586 70085640 -73700815 + GC_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr12 70085670 70085694 -73700761 + GC_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr12 70085717 70085744 -73700711 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 70086060 70086088 -73700367 + AT_rich Low_complexity Low_complexity 1 28 0 2023 141 0 52 chr12 70086567 70086893 -73699562 + AluSx SINE Alu 1 309 -3 231 309 15 15 chr12 70087105 70087173 -73699282 - 5S rRNA rRNA -41 80 13 539 280 43 28 chr12 70087326 70087537 -73698918 + MIR SINE MIR 15 228 -34 238 296 106 14 chr12 70087567 70087709 -73698746 - L3 LINE CR1 -94 1483 1329 316 350 25 8 chr12 70087845 70087965 -73698490 + MIR SINE MIR 21 142 -66 266 306 12 0 chr12 70087972 70088057 -73698398 + MER117 DNA MER1_type 1 86 -111 383 191 29 57 chr12 70088622 70088727 -73697728 - MIR SINE MIR -67 195 94 223 309 74 0 chr12 70090479 70090560 -73695895 - MIR SINE MIR -70 192 106 324 141 24 12 chr12 70091093 70091178 -73695277 + (TA)n Simple_repeat Simple_repeat 2 87 0 2164 108 28 0 chr12 70093092 70093379 -73693076 + AluSq SINE Alu 3 297 -16 2161 88 4 0 chr12 70095829 70096103 -73690352 - AluSx SINE Alu -5 307 33 236 260 0 27 chr12 70096148 70096221 -73690234 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 619 318 65 65 chr12 70096237 70096764 -73689691 - L2 LINE L2 -27 3245 2712 319 321 139 27 chr12 70096859 70097046 -73689409 + MIR SINE MIR 5 212 -50 281 341 29 14 chr12 70097133 70097271 -73689184 - MER5A DNA MER1_type 0 189 50 2103 141 0 0 chr12 70097288 70097600 -73688855 + AluSx SINE Alu 1 312 0 342 236 14 0 chr12 70097696 70097768 -73688687 - MIR SINE MIR -95 113 41 210 206 132 15 chr12 70097812 70097880 -73688575 + MIR3 SINE MIR 120 195 -13 2370 48 7 10 chr12 70099470 70099763 -73686692 - AluY SINE Alu -19 292 1 2374 168 91 44 chr12 70099793 70100275 -73686180 - MLT1D LTR MaLR 0 505 1 730 209 61 12 chr12 70101065 70101228 -73685227 - MER5A DNA MER1_type 0 189 19 181 319 78 26 chr12 70101298 70101414 -73685041 + L2 LINE L2 3182 3303 -10 189 358 79 83 chr12 70102060 70102289 -73684166 - L2 LINE L2 -16 3256 3029 247 239 99 141 chr12 70102428 70102641 -73683814 - MIR SINE MIR -39 223 20 510 268 0 8 chr12 70102855 70102982 -73683473 - L2 LINE L2 -1 3312 3187 532 273 38 0 chr12 70103296 70103428 -73683027 + L2 LINE L2 3177 3313 0 198 329 101 27 chr12 70104027 70104176 -73682279 - MIR SINE MIR -24 238 79 27 0 0 0 chr12 70104301 70104328 -73682127 + AT_rich Low_complexity Low_complexity 1 27 0 741 250 60 28 chr12 70104337 70104618 -73681837 + L1ME LINE L1 5497 5777 -344 400 207 67 1 chr12 70104779 70104905 -73681550 + HAL1b LINE L1 1222 6120 -1 220 309 15 0 chr12 70106498 70106566 -73679889 + L2 LINE L2 765 833 -2481 2688 175 60 4 chr12 70106645 70107125 -73679330 - MLT2B2 LTR ERVL -8 507 1 2174 287 88 59 chr12 70107125 70107844 -73678611 - ERVL LTR ERVL -489 5275 4513 1707 166 0 50 chr12 70107844 70108163 -73678292 - AluJo SINE Alu -9 303 1 2174 287 88 59 chr12 70108163 70108528 -73677927 - ERVL LTR ERVL -1251 4513 4160 211 200 0 0 chr12 70109767 70109815 -73676640 + (CATG)n Simple_repeat Simple_repeat 1 48 0 400 263 51 15 chr12 70109822 70109959 -73676496 - L3 LINE CR1 -620 957 816 599 272 302 14 chr12 70110066 70110437 -73676018 + L2 LINE L2 2836 3313 0 454 320 56 34 chr12 70110446 70110715 -73675740 - L3 LINE CR1 -820 757 483 1983 155 3 82 chr12 70110917 70111284 -73675171 + MER1B DNA MER1_type 2 339 0 279 290 56 43 chr12 70111284 70111446 -73675009 + L2 LINE L2 2933 3096 -176 1775 198 30 43 chr12 70111851 70112220 -73674235 + MLT1A1 LTR MaLR 1 364 -1 632 241 179 38 chr12 70112869 70113293 -73673162 + L1ME4a LINE L1 5590 6073 -48 511 80 0 34 chr12 70113297 70113385 -73673070 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 1674 153 21 24 chr12 70113389 70113676 -73672779 - AluJo SINE Alu 0 312 27 776 151 127 0 chr12 70113693 70113819 -73672636 - MER46A DNA MER2_type -91 145 4 1851 145 14 3 chr12 70114694 70114983 -73671472 + AluSx SINE Alu 1 292 -20 228 35 0 0 chr12 70114992 70115021 -73671434 + (CA)n Simple_repeat Simple_repeat 2 30 0 333 338 19 50 chr12 70115042 70115202 -73671253 + L2 LINE L2 346 500 -2814 1564 239 21 84 chr12 70115209 70115321 -73671134 + MER45C DNA AcHobo 1 118 -835 2069 147 86 11 chr12 70115321 70115682 -73670773 + MLT1B LTR MaLR 3 390 0 1564 239 21 84 chr12 70115682 70116080 -73670375 + MER45C DNA AcHobo 118 479 -474 1453 185 32 42 chr12 70116085 70116310 -73670145 - MER54B LTR ERVL 0 793 665 2318 148 29 56 chr12 70116310 70116796 -73669659 - L1MA4A LINE L1 0 6303 5831 1453 185 32 42 chr12 70116796 70116973 -73669482 - MER54B LTR ERVL -128 665 488 201 39 0 0 chr12 70116995 70117021 -73669434 + (TG)n Simple_repeat Simple_repeat 2 27 0 885 259 115 17 chr12 70117257 70117674 -73668781 + MER45C DNA AcHobo 483 953 0 189 107 0 0 chr12 70117888 70117916 -73668539 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 537 326 17 0 chr12 70118052 70118224 -73668231 + MIR SINE MIR 76 250 -12 44 0 0 0 chr12 70118390 70118434 -73668021 + AT_rich Low_complexity Low_complexity 1 44 0 282 106 21 0 chr12 70119396 70119443 -73667012 - MADE1 DNA Mariner 0 80 33 2306 117 0 0 chr12 70121381 70121690 -73664765 - AluSx SINE Alu -3 309 1 389 255 92 149 chr12 70121896 70122178 -73664277 + L2 LINE L2 3006 3271 -1 2181 119 0 16 chr12 70122377 70122680 -73663775 - AluSq SINE Alu -15 298 1 1786 175 0 7 chr12 70122729 70123032 -73663423 - AluJb SINE Alu -11 301 1 408 304 62 0 chr12 70123321 70123482 -73662973 - MIR SINE MIR -23 239 69 276 300 12 0 chr12 70124301 70124381 -73662074 - MIR SINE MIR -116 146 66 22 56 0 0 chr12 70124426 70124462 -73661993 + AT_rich Low_complexity Low_complexity 1 36 0 292 295 47 42 chr12 70124488 70124681 -73661774 - L1ME3A LINE L1 -15 6155 5962 4014 148 63 47 chr12 70124715 70124826 -73661629 - L1MB8 LINE L1 -1 6177 6069 2115 136 10 0 chr12 70124826 70125135 -73661320 - AluSx SINE Alu 0 312 1 4014 148 63 47 chr12 70125135 70125990 -73660465 - L1MB8 LINE L1 -109 6069 5188 762 197 100 4 chr12 70126970 70127229 -73659226 - L1MB8 LINE L1 -941 5205 4922 280 235 53 53 chr12 70127198 70127330 -73659125 - L1M4 LINE L1 -840 5306 5175 * 754 133 0 8 chr12 70127390 70127510 -73658945 + FLAM_C SINE Alu 21 139 -4 1028 145 0 0 chr12 70127712 70127915 -73658540 + AluSg/x SINE Alu 131 333 0 243 313 71 18 chr12 70127954 70128066 -73658389 - L2 LINE L2 -49 3264 3147 221 294 44 0 chr12 70128107 70128175 -73658280 + MIR SINE MIR 192 262 0 488 330 125 42 chr12 70128232 70128784 -73657671 - L2 LINE L2 -339 2975 2378 216 270 95 0 chr12 70128892 70128955 -73657500 - MIR3 SINE MIR -6 202 134 292 272 72 72 chr12 70129295 70129420 -73657035 - MIR3 SINE MIR -54 154 30 251 312 220 0 chr12 70129435 70129544 -73656911 + L2 LINE L2 3133 3265 -7 327 153 34 6 chr12 70129742 70129860 -73656595 + MER53 DNA DNA 2 189 0 318 125 0 0 chr12 70130289 70130337 -73656118 - AluJb SINE Alu -21 281 234 771 239 0 28 chr12 70130337 70130513 -73655942 - AluJb SINE Alu -141 171 1 1860 164 26 0 chr12 70131129 70131433 -73655022 + AluJb SINE Alu 1 312 0 471 288 31 31 chr12 70131554 70131714 -73654741 - MIR3 SINE MIR -7 201 42 458 346 96 39 chr12 70131752 70131776 -73654679 + L2 LINE L2 1952 1973 -1341 2691 102 3 3 chr12 70131776 70132140 -73654315 - THE1B LTR MaLR 0 364 1 458 346 96 39 chr12 70132140 70132575 -73653880 + L2 LINE L2 1973 2437 -877 346 296 112 6 chr12 70132754 70132933 -73653522 - Charlie8 DNA MER1_type -2158 259 62 221 284 0 15 chr12 70133046 70133113 -73653342 + L2 LINE L2 2588 2653 -661 351 231 137 26 chr12 70133176 70133293 -73653162 - MIR SINE MIR -18 244 115 570 276 241 19 chr12 70133643 70133958 -73652497 + L2 LINE L2 2887 3271 -1 25 51 0 0 chr12 70135480 70135519 -73650936 + AT_rich Low_complexity Low_complexity 1 39 0 488 330 125 42 chr12 70136060 70136612 -73649843 + L2 LINE L2 2378 2975 -339 221 294 44 0 chr12 70136669 70136737 -73649718 - MIR SINE MIR 0 262 192 243 313 71 18 chr12 70136778 70136890 -73649565 + L2 LINE L2 3147 3264 -49 1027 145 0 0 chr12 70136929 70137132 -73649323 - AluSg/x SINE Alu 0 335 133 754 133 0 8 chr12 70137334 70137454 -73649001 - FLAM_C SINE Alu -4 139 21 280 235 53 53 chr12 70137514 70137646 -73648809 + L1M4 LINE L1 5175 5306 -840 * 762 197 100 4 chr12 70137615 70137874 -73648581 + L1MB8 LINE L1 4922 5205 -941 3620 146 33 46 chr12 70138854 70139678 -73646777 + L1MB8 LINE L1 5188 6007 -171 22 0 0 0 chr12 70139684 70139706 -73646749 + AT_rich Low_complexity Low_complexity 1 22 0 2144 97 3 36 chr12 70139709 70140017 -73646438 + AluSc SINE Alu 1 298 -11 3081 266 72 35 chr12 70140083 70140885 -73645570 - L2 LINE L2 -256 3057 2207 2409 106 0 0 chr12 70140885 70141197 -73645258 + AluSx SINE Alu 1 312 0 3081 266 72 35 chr12 70141197 70141484 -73644971 - L2 LINE L2 -1106 2207 1932 1368 146 62 38 chr12 70141488 70141907 -73644548 + MLT1D LTR MaLR 1 502 -3 430 271 17 8 chr12 70141909 70142027 -73644428 - L2 LINE L2 -1382 1932 1814 314 333 8 56 chr12 70142137 70142263 -73644192 - MER91A DNA MER1_type -56 140 21 305 274 49 0 chr12 70142281 70142383 -73644072 - L2 LINE L2 -1491 1823 1717 1244 144 6 0 chr12 70142389 70142570 -73643885 - AluSx SINE Alu -11 299 118 2122 121 0 3 chr12 70142600 70142890 -73643565 - AluSx SINE Alu -23 289 1 762 100 0 0 chr12 70142890 70142990 -73643465 - AluSx SINE Alu -177 136 37 613 237 29 0 chr12 70142996 70143135 -73643320 - L2 LINE L2 -1612 1702 1560 534 31 0 0 chr12 70143697 70143761 -73642694 + (TATG)n Simple_repeat Simple_repeat 2 65 0 1734 128 0 47 chr12 70143891 70144165 -73642290 - AluSq SINE Alu -52 261 1 2530 108 5 22 chr12 70144446 70144816 -73641639 - THE1B LTR MaLR 0 364 1 672 295 72 17 chr12 70145132 70145369 -73641086 + MIR SINE MIR 12 261 -1 1991 117 4 4 chr12 70145509 70145790 -73640665 - AluSx SINE Alu -31 281 1 2081 105 52 133 chr12 70146441 70146671 -73639784 - MSTC LTR MaLR 0 428 181 914 120 0 175 chr12 70146671 70146905 -73639550 + 7SK RNA RNA 1 193 0 2081 105 52 133 chr12 70146905 70147096 -73639359 - MSTC LTR MaLR -247 181 46 2032 136 3 3 chr12 70147096 70147391 -73639064 - AluSx SINE Alu -17 295 1 2081 105 52 133 chr12 70147391 70147434 -73639021 - MSTC LTR MaLR -382 46 1 274 248 92 124 chr12 70147445 70147663 -73638792 + L2 LINE L2 3103 3313 0 1537 199 40 0 chr12 70147944 70148127 -73638328 - AluJo SINE Alu 0 312 111 360 0 0 0 chr12 70148127 70148167 -73638288 + (TG)n Simple_repeat Simple_repeat 1 40 0 1537 199 40 0 chr12 70148167 70148279 -73638176 - AluJo SINE Alu -201 111 5 1035 161 42 0 chr12 70148291 70148459 -73637996 - AluSg/x SINE Alu -4 306 132 2229 105 0 20 chr12 70148867 70149171 -73637284 + AluSq SINE Alu 1 298 -15 1513 201 67 6 chr12 70149304 70149632 -73636823 + MER7A DNA MER2_type 1 346 0 1553 164 39 28 chr12 70149642 70149928 -73636527 - AluJo SINE Alu -23 289 1 256 206 0 98 chr12 70150188 70150280 -73636175 - MLT1I LTR MaLR 0 409 327 484 240 64 8 chr12 70150405 70150530 -73635925 - MLT1I LTR MaLR -238 171 40 249 176 149 0 chr12 70151334 70151408 -73635047 - L1MC4 LINE L1 -433 7609 7525 620 192 10 98 chr12 70151433 70151626 -73634829 + MER58C DNA MER1_type 40 215 0 1484 147 54 22 chr12 70151713 70152027 -73634428 + MER33 DNA MER1_type 1 324 0 528 270 176 20 chr12 70152038 70152482 -73633973 - L1MC4 LINE L1 -547 7495 6983 1674 138 8 0 chr12 70152497 70152743 -73633712 - AluSx SINE Alu -64 248 1 537 221 123 12 chr12 70152779 70152942 -73633513 + AluJo SINE Alu 122 302 -10 483 268 151 65 chr12 70152946 70153580 -73632875 - L1MC4a LINE L1 -1120 6688 6000 276 154 0 0 chr12 70153580 70153632 -73632823 + CT-rich Low_complexity Low_complexity 3 54 0 1300 185 13 0 chr12 70153633 70153860 -73632595 - AluJo SINE Alu -82 230 1 670 280 19 33 chr12 70153935 70154206 -73632249 - L1MC4a LINE L1 -1903 5905 5639 266 297 0 0 chr12 70154207 70154271 -73632184 - MER5B DNA MER1_type -114 64 1 1467 164 0 20 chr12 70154442 70154692 -73631763 + AluJb SINE Alu 1 245 -67 180 0 0 0 chr12 70154705 70154725 -73631730 + (A)n Simple_repeat Simple_repeat 1 20 0 692 206 0 62 chr12 70154751 70154897 -73631558 + FLAM_C SINE Alu 7 143 0 503 322 182 18 chr12 70154987 70155444 -73631011 - L2 LINE L2 -932 2382 1851 233 267 30 59 chr12 70156009 70156110 -73630345 - MER5A DNA MER1_type 0 189 92 205 172 0 62 chr12 70156330 70156394 -73630061 + (CCCCG)n Simple_repeat Simple_repeat 5 64 0 186 43 0 0 chr12 70156973 70156996 -73629459 + (T)n Simple_repeat Simple_repeat 1 23 0 344 192 0 0 chr12 70157000 70157073 -73629382 - LTR30 LTR ERV1 -98 624 552 189 0 0 0 chr12 70157074 70157095 -73629360 + (T)n Simple_repeat Simple_repeat 1 21 0 2012 107 50 10 chr12 70157335 70157441 -73629014 + AluSq SINE Alu 3 103 -210 180 0 0 0 chr12 70157441 70157461 -73628994 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2012 107 50 10 chr12 70157461 70157653 -73628802 + AluSq SINE Alu 103 313 0 782 203 148 0 chr12 70157832 70158014 -73628441 + MER3 DNA MER1_type 1 209 0 401 318 189 17 chr12 70158092 70158451 -73628004 - L2 LINE L2 -57 3256 2836 224 258 172 21 chr12 70158460 70158553 -73627902 - L2 LINE L2 -29 3243 3137 284 214 22 101 chr12 70159289 70159378 -73627077 + MIR3 SINE MIR 121 202 -6 1828 152 17 30 chr12 70159447 70159749 -73626706 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr12 70161466 70161494 -73624961 + AT_rich Low_complexity Low_complexity 1 28 0 1897 136 52 0 chr12 70161732 70162018 -73624437 - AluSx SINE Alu -11 301 1 198 0 0 0 chr12 70162031 70162053 -73624402 + (A)n Simple_repeat Simple_repeat 1 22 0 328 299 46 23 chr12 70162093 70162267 -73624188 + HAL1 LINE L1 341 518 -1989 367 254 120 7 chr12 70162322 70162464 -73623991 - HAL1 LINE L1 -1797 710 553 2306 124 5 58 chr12 70162477 70162887 -73623568 - MLT1B LTR MaLR 0 390 3 868 271 75 59 chr12 70162895 70163504 -73622951 + HAL1 LINE L1 1887 2505 -2 21 0 0 0 chr12 70163504 70163525 -73622930 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 70163613 70163634 -73622821 + AT_rich Low_complexity Low_complexity 1 21 0 2027 125 7 7 chr12 70164637 70164940 -73621515 + AluSg SINE Alu 1 303 -7 1811 174 0 3 chr12 70165172 70165465 -73620990 + AluJb SINE Alu 7 298 -14 249 141 254 28 chr12 70165518 70165589 -73620866 - MER5C DNA MER1_type -237 87 1 257 365 19 0 chr12 70165621 70165725 -73620730 + L2 LINE L2 3207 3312 -1 197 202 45 101 chr12 70165753 70165842 -73620613 - MIR3 SINE MIR -1 207 124 267 331 90 27 chr12 70166103 70166257 -73620198 - MIR SINE MIR -58 150 20 326 207 27 81 chr12 70166593 70166704 -73619751 + MER117 DNA MER1_type 15 119 -78 566 164 22 8 chr12 70166766 70166900 -73619555 + MER53 DNA DNA 54 189 0 582 146 97 0 chr12 70167251 70167354 -73619101 - MER46A DNA MER2_type -122 114 2 255 204 0 0 chr12 70167311 70167360 -73619095 + MER46A DNA MER2_type 101 149 -87 * 21 0 0 0 chr12 70167456 70167477 -73618978 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 70168658 70168682 -73617773 + AT_rich Low_complexity Low_complexity 1 24 0 2147 136 17 9 chr12 70169965 70170310 -73616145 + MER7A DNA MER2_type 1 346 0 1069 99 209 11 chr12 70170454 70170555 -73615900 + MER30 DNA MER1_type 2 82 -148 315 0 0 0 chr12 70170555 70170590 -73615865 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2144 108 0 51 chr12 70170590 70170725 -73615730 + AluSx SINE Alu 2 142 -170 2555 63 0 0 chr12 70170725 70171027 -73615428 + AluY SINE Alu 1 302 -9 2144 108 0 51 chr12 70171027 70171206 -73615249 + AluSx SINE Alu 142 300 -12 1069 99 209 11 chr12 70171206 70171294 -73615161 + MER30 DNA MER1_type 81 230 0 331 369 64 5 chr12 70172165 70172352 -73614103 + MIR SINE MIR 34 231 -31 194 186 93 0 chr12 70172975 70173018 -73613437 + L2 LINE L2 3226 3272 0 190 354 30 30 chr12 70173359 70173458 -73612997 + MIR SINE MIR 113 211 -51 350 268 46 59 chr12 70173907 70174060 -73612395 - L2 LINE L2 -5 3308 3158 315 107 0 18 chr12 70174818 70174874 -73611581 - HsTC2 DNA Tc2 -1842 56 2 2358 93 0 7 chr12 70176268 70176578 -73609877 + AluSq SINE Alu 1 308 -5 280 324 97 32 chr12 70177327 70177512 -73608943 + MIR SINE MIR 35 231 -31 639 163 85 7 chr12 70178316 70178469 -73607986 - L1M4 LINE L1 -2401 3745 3581 1023 170 5 36 chr12 70179355 70179579 -73606876 + MER96B DNA MER1_type? 201 417 0 1049 180 23 5 chr12 70179865 70180082 -73606373 - L1MD3 LINE L1 -16 7979 7759 2135 70 8 0 chr12 70180239 70180498 -73605957 - AluSx SINE Alu -19 293 33 236 260 0 27 chr12 70180543 70180616 -73605839 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 593 320 64 71 chr12 70180632 70181162 -73605293 - L2 LINE L2 -27 3245 2712 333 321 139 27 chr12 70181257 70181444 -73605011 + MIR SINE MIR 5 212 -50 293 355 22 7 chr12 70181531 70181669 -73604786 - MER5A DNA MER1_type 0 189 50 2113 141 0 0 chr12 70181686 70181998 -73604457 + AluSx SINE Alu 1 312 0 346 236 14 0 chr12 70182095 70182167 -73604288 - MIR SINE MIR -95 113 41 217 206 132 15 chr12 70182211 70182279 -73604176 + MIR3 SINE MIR 120 195 -13 2427 48 3 7 chr12 70183869 70184162 -73602293 - AluY SINE Alu -19 292 1 2175 171 87 43 chr12 70184192 70184676 -73601779 - MLT1D LTR MaLR 0 505 1 776 198 59 48 chr12 70185463 70185650 -73600805 - MER5A DNA MER1_type 0 189 1 190 319 78 26 chr12 70185693 70185809 -73600646 + L2 LINE L2 3182 3303 -10 1233 145 27 36 chr12 70188067 70188288 -73598167 + MER20 DNA MER1_type 1 219 0 205 324 0 0 chr12 70188335 70188406 -73598049 + G-rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr12 70188712 70188735 -73597720 + AT_rich Low_complexity Low_complexity 1 23 0 880 299 14 4 chr12 70188825 70189106 -73597349 + AluSx SINE Alu 11 294 -18 447 200 42 0 chr12 70189132 70189227 -73597228 + L1M4 LINE L1 21 119 -6423 286 300 0 12 chr12 70189592 70189672 -73596783 - MER2 DNA MER2_type 0 345 267 23 40 0 0 chr12 70190339 70190364 -73596091 + AT_rich Low_complexity Low_complexity 1 25 0 223 238 0 0 chr12 70190378 70190441 -73596014 + C-rich Low_complexity Low_complexity 1 63 0 1190 194 4 37 chr12 70190629 70190871 -73595584 + AluJo SINE Alu 1 234 -78 1382 151 9 5 chr12 70191695 70191913 -73594542 - AluSx SINE Alu -93 219 1 2144 117 3 7 chr12 70191954 70192262 -73594193 - AluSx SINE Alu -5 307 1 221 299 0 0 chr12 70192842 70192909 -73593546 + C-rich Low_complexity Low_complexity 1 67 0 1434 169 0 0 chr12 70192909 70193128 -73593327 + AluSc SINE Alu 82 300 -9 2078 105 0 46 chr12 70193128 70193434 -73593021 + AluSp SINE Alu 6 297 -16 209 300 29 0 chr12 70193906 70193976 -73592479 + L2 LINE L2 3241 3312 -1 197 202 45 101 chr12 70194004 70194093 -73592362 - MIR3 SINE MIR -1 207 124 267 331 90 27 chr12 70194354 70194508 -73591947 - MIR SINE MIR -58 150 20 326 207 27 81 chr12 70194844 70194955 -73591500 + MER117 DNA MER1_type 15 119 -78 556 173 23 8 chr12 70195018 70195151 -73591304 + MER53 DNA DNA 55 189 0 582 146 97 0 chr12 70195502 70195605 -73590850 - MER46A DNA MER2_type -122 114 2 255 204 0 0 chr12 70195562 70195611 -73590844 + MER46A DNA MER2_type 101 149 -87 * 21 0 0 0 chr12 70195707 70195728 -73590727 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 70196909 70196933 -73589522 + AT_rich Low_complexity Low_complexity 1 24 0 2147 136 17 9 chr12 70198216 70198561 -73587894 + MER7A DNA MER2_type 1 346 0 1157 114 149 10 chr12 70198705 70198806 -73587649 + MER30 DNA MER1_type 2 88 -142 315 0 0 0 chr12 70198806 70198841 -73587614 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2140 112 0 39 chr12 70198841 70198976 -73587479 + AluSx SINE Alu 2 141 -171 2555 63 0 0 chr12 70198976 70199278 -73587177 + AluY SINE Alu 1 302 -9 2140 112 0 39 chr12 70199278 70199447 -73587008 + AluSx SINE Alu 141 294 -18 1157 114 149 10 chr12 70199447 70199545 -73586910 + MER30 DNA MER1_type 87 230 0 331 369 64 5 chr12 70200416 70200603 -73585852 + MIR SINE MIR 34 231 -31 194 186 93 0 chr12 70201226 70201269 -73585186 + L2 LINE L2 3226 3272 0 190 354 30 30 chr12 70201610 70201709 -73584746 + MIR SINE MIR 113 211 -51 350 268 46 59 chr12 70202158 70202311 -73584144 - L2 LINE L2 -5 3308 3158 315 107 0 18 chr12 70203069 70203125 -73583330 - HsTC2 DNA Tc2 -1842 56 2 2349 94 0 7 chr12 70204519 70204828 -73581627 + AluSq SINE Alu 1 307 -6 280 324 97 32 chr12 70205577 70205762 -73580693 + MIR SINE MIR 35 231 -31 639 163 85 7 chr12 70206566 70206719 -73579736 - L1M4 LINE L1 -2401 3745 3581 1023 170 5 36 chr12 70207605 70207829 -73578626 + MER96B DNA MER1_type? 201 417 0 1049 180 23 5 chr12 70208115 70208332 -73578123 - L1MD3 LINE L1 -16 7979 7759 2347 76 7 0 chr12 70208489 70208778 -73577677 - AluSg SINE Alu -19 291 1 2175 127 0 13 chr12 70208986 70209302 -73577153 + AluSx SINE Alu 1 312 0 427 273 25 0 chr12 70209563 70209724 -73576731 - HAL1 LINE L1 -1230 1277 1113 938 277 50 76 chr12 70209882 70210410 -73576045 - L2 LINE L2 -1 3312 2793 565 151 11 0 chr12 70210410 70210503 -73575952 + Charlie5 DNA MER1_type 1 94 -2518 1689 160 61 3 chr12 70210516 70210810 -73575645 + AluJb SINE Alu 1 311 -1 1339 167 91 48 chr12 70210812 70211184 -73575271 + Charlie5 DNA MER1_type 2237 2624 0 324 188 31 0 chr12 70211184 70211248 -73575207 - L2 LINE L2 -514 2800 2735 234 273 13 52 chr12 70211539 70211616 -73574839 - L2 LINE L2 -56 3257 3184 382 349 70 16 chr12 70211717 70211975 -73574480 - L2 LINE L2 -430 2884 2613 192 40 0 0 chr12 70212800 70212825 -73573630 + (TA)n Simple_repeat Simple_repeat 2 26 0 293 237 46 0 chr12 70212881 70213012 -73573443 + (TA)n Simple_repeat Simple_repeat 1 137 0 1535 187 61 0 chr12 70214572 70214866 -73571589 + Tigger7 DNA MER2_type 7 318 -415 551 170 52 0 chr12 70214863 70214998 -73571457 + Tigger7 DNA MER2_type 2299 2440 -47 * 964 275 213 60 chr12 70215313 70215640 -73570815 - L2 LINE L2 -40 3273 2997 2105 103 11 3 chr12 70215640 70215943 -73570512 + AluSq SINE Alu 1 305 0 964 275 213 60 chr12 70215943 70216120 -73570335 - L2 LINE L2 -316 2997 2848 2022 143 0 0 chr12 70216120 70216406 -73570049 + AluJb SINE Alu 7 292 -20 964 275 213 60 chr12 70216406 70216417 -73570038 - L2 LINE L2 -465 2848 2840 1856 188 7 7 chr12 70216417 70216725 -73569730 + AluJo SINE Alu 2 309 -3 1990 150 0 13 chr12 70216729 70217036 -73569419 + AluJb SINE Alu 1 303 -9 964 275 213 60 chr12 70217036 70218079 -73568376 - L2 LINE L2 -475 2838 1446 279 318 154 45 chr12 70218909 70219443 -73567012 - L2 LINE L2 -386 2928 2337 522 220 107 48 chr12 70219797 70219965 -73566490 + MER45A DNA AcHobo 1 178 0 244 274 110 0 chr12 70219997 70220070 -73566385 - L2 LINE L2 -8 3305 3225 21 36 0 0 chr12 70220553 70220581 -73565874 + AT_rich Low_complexity Low_complexity 1 28 0 2222 105 0 0 chr12 70220596 70220922 -73565533 + AluSx SINE Alu 1 326 0 239 307 10 0 chr12 70221133 70221234 -73565221 - MARNA DNA Mariner -158 428 327 876 94 78 0 chr12 70221295 70221423 -73565032 - MER85 DNA T2_type 0 139 2 3707 164 62 36 chr12 70221424 70221540 -73564915 - L1MB7 LINE L1 -9 6175 6064 899 131 0 36 chr12 70221540 70221677 -73564778 - FLAM_C SINE Alu -1 132 1 3707 164 62 36 chr12 70221677 70221716 -73564739 - L1MB7 LINE L1 -120 6064 6028 2379 78 7 0 chr12 70221716 70222011 -73564444 + AluSp SINE Alu 1 297 -16 3707 164 62 36 chr12 70222011 70222719 -73563736 - L1MB7 LINE L1 -156 6028 5288 2328 192 22 91 chr12 70222723 70222794 -73563661 - MLT2B3 LTR ERVL 0 554 480 3138 85 22 25 chr12 70222794 70223239 -73563216 - MLT2A1 LTR ERVL 0 444 1 2328 192 22 91 chr12 70223239 70223762 -73562693 - MLT2B3 LTR ERVL -74 480 1 351 252 0 0 chr12 70223765 70223872 -73562583 - L1MB7 LINE L1 -861 5285 5179 1593 137 115 34 chr12 70223872 70224207 -73562248 + THE1C LTR MaLR 1 423 -5 7662 203 54 32 chr12 70224210 70224604 -73561851 - L1MB7 LINE L1 -962 5184 4800 2402 94 0 10 chr12 70224604 70224913 -73561542 - AluY SINE Alu -5 306 1 7662 203 54 32 chr12 70224913 70224926 -73561529 - L1MB7 LINE L1 -1346 4800 4789 2207 118 0 3 chr12 70224926 70225232 -73561223 - AluSx SINE Alu -7 305 1 7662 203 54 32 chr12 70225232 70225535 -73560920 - L1MB7 LINE L1 -1357 4789 4494 1517 163 0 52 chr12 70225535 70225805 -73560650 - AluJb SINE Alu -54 258 3 7662 203 54 32 chr12 70225805 70226740 -73559715 - L1MB7 LINE L1 -1652 4494 3484 2371 107 3 0 chr12 70226740 70227049 -73559406 - AluSp SINE Alu -2 311 2 7662 203 54 32 chr12 70227049 70227409 -73559046 - L1MB7 LINE L1 -2662 3484 3133 1108 175 129 132 chr12 70227410 70227805 -73558650 - MER92B LTR ERV1 -242 394 1 589 173 0 0 chr12 70227955 70228059 -73558396 + U13 snRNA snRNA 1 104 0 297 266 190 55 chr12 70228261 70228657 -73557798 - L3 LINE CR1 -173 1404 885 2132 95 3 18 chr12 70229300 70229585 -73556870 + AluSq SINE Alu 1 281 -32 192 40 0 0 chr12 70229592 70229617 -73556838 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 493 269 31 31 chr12 70231755 70231915 -73554540 - MIR SINE MIR -100 162 3 729 192 0 0 chr12 70231938 70232063 -73554392 + FLAM_C SINE Alu 3 127 -6 2146 108 3 10 chr12 70232452 70232748 -73553707 + AluSq SINE Alu 1 294 -19 180 308 46 0 chr12 70233227 70233292 -73553163 - MIR SINE MIR -123 139 72 539 98 73 0 chr12 70233793 70233875 -73552580 - AluSg/x SINE Alu -11 298 211 557 253 53 12 chr12 70234017 70234187 -73552268 - MER5B DNA MER1_type -1 177 1 585 277 167 21 chr12 70234312 70234641 -73551814 - L2 LINE L2 -22 3291 2915 2158 112 41 0 chr12 70234687 70234981 -73551474 + AluSx SINE Alu 1 306 -6 941 140 42 0 chr12 70235055 70235198 -73551257 + AluSg/x SINE Alu 137 285 -27 198 0 0 0 chr12 70235198 70235220 -73551235 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 321 304 29 0 chr12 70236577 70236679 -73549776 - L2 LINE L2 0 3313 3209 189 0 0 0 chr12 70236923 70236944 -73549511 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 198 314 23 0 chr12 70237147 70237233 -73549222 - MIR SINE MIR -113 149 62 192 77 0 0 chr12 70237447 70237473 -73548982 + (TG)n Simple_repeat Simple_repeat 1 26 0 204 211 0 0 chr12 70237488 70237526 -73548929 - L2 LINE L2 -32 3281 3244 253 238 62 38 chr12 70237970 70238050 -73548405 + L2 LINE L2 3201 3282 -31 203 324 49 0 chr12 70238502 70238604 -73547851 - MIR SINE MIR -125 137 31 378 270 83 68 chr12 70238789 70239094 -73547361 - L1MC5 LINE L1 -50 7911 7534 2142 128 0 25 chr12 70239094 70239413 -73547042 - AluSx SINE Alu -1 311 1 378 270 83 68 chr12 70239413 70239638 -73546817 - L1MC5 LINE L1 -427 7534 7314 1032 207 40 140 chr12 70239774 70240131 -73546324 - L1MC4 LINE L1 -747 7214 6970 2019 147 0 3 chr12 70240131 70240431 -73546024 - AluSx SINE Alu -13 299 1 1032 207 40 140 chr12 70240431 70240644 -73545811 - L1MC4 LINE L1 -991 6970 6737 1938 140 0 29 chr12 70240685 70240992 -73545463 - AluSx SINE Alu -14 298 1 22 35 0 0 chr12 70241973 70242002 -73544453 + AT_rich Low_complexity Low_complexity 1 29 0 2287 110 3 7 chr12 70244383 70244691 -73541764 - AluSp SINE Alu -6 307 1 374 204 32 0 chr12 70245212 70245305 -73541150 + LTR37B LTR ERV1 211 306 -162 294 256 47 0 chr12 70245372 70245458 -73540997 - L1MC4 LINE L1 -1339 6703 6614 1746 163 10 33 chr12 70245482 70245788 -73540667 - AluJb SINE Alu -13 299 1 306 238 40 30 chr12 70245798 70245899 -73540556 + LTR37B LTR ERV1 341 442 -26 1801 152 51 3 chr12 70245900 70246212 -73540243 + L1MA7 LINE L1 5822 6153 -147 2212 109 0 47 chr12 70246212 70246532 -73539923 + AluSg SINE Alu 5 309 -1 1801 152 51 3 chr12 70246532 70246568 -73539887 + L1MA7 LINE L1 6153 6186 -114 1589 138 62 90 chr12 70246568 70246958 -73539497 + MER4A LTR ERV1 1 226 -239 319 149 30 45 chr12 70246998 70247065 -73539390 + MER4A LTR ERV1 358 423 -241 * 677 205 63 32 chr12 70247060 70247250 -73539205 + MER4C LTR ERV1 270 465 0 498 207 17 0 chr12 70247250 70247366 -73539089 + L1MA6 LINE L1 6183 6300 0 2156 108 0 4 chr12 70247395 70247674 -73538781 + AluSx SINE Alu 5 282 -30 1832 178 0 7 chr12 70248912 70249221 -73537234 - AluJo SINE Alu -5 307 1 354 286 30 23 chr12 70249615 70249748 -73536707 - MER5A DNA MER1_type -1 188 55 259 260 125 29 chr12 70249809 70249913 -73536542 - MER112 DNA MER1_type -15 245 132 225 0 0 0 chr12 70251578 70251603 -73534852 + (T)n Simple_repeat Simple_repeat 1 25 0 2308 113 0 0 chr12 70253396 70253697 -73532758 - AluSx SINE Alu -11 301 1 533 182 57 88 chr12 70255240 70255313 -73531142 - MIR SINE MIR -49 213 139 216 0 0 0 chr12 70255313 70255337 -73531118 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2002 143 3 0 chr12 70255339 70255626 -73530829 - AluSx SINE Alu -24 288 1 533 182 57 88 chr12 70255626 70255708 -73530747 - MIR SINE MIR -124 138 60 301 313 147 33 chr12 70255992 70256203 -73530252 - MIR SINE MIR -15 247 13 2223 113 7 0 chr12 70256424 70256725 -73529730 - AluSq SINE Alu -10 303 1 211 196 0 36 chr12 70257102 70257158 -73529297 + A-rich Low_complexity Low_complexity 1 54 0 187 210 65 16 chr12 70257411 70257473 -73528982 - MIR SINE MIR -109 153 89 2491 45 0 39 chr12 70259566 70259875 -73526580 - AluY SINE Alu -14 297 1 2124 115 0 33 chr12 70260393 70260697 -73525758 + AluSx SINE Alu 1 294 -18 2205 116 7 3 chr12 70260699 70261001 -73525454 + AluSg SINE Alu 1 303 -7 1162 152 5 5 chr12 70261016 70261207 -73525248 + AluSg/x SINE Alu 116 306 -3 340 296 24 47 chr12 70261776 70261945 -73524510 - MIR SINE MIR 0 262 98 730 228 46 62 chr12 70261980 70262148 -73524307 + Charlie2 DNA MER1_type 74 238 -2624 2072 126 3 14 chr12 70262148 70262442 -73524013 - AluSx SINE Alu -21 291 1 730 228 46 62 chr12 70262442 70262514 -73523941 + Charlie2 DNA MER1_type 238 310 -2552 637 237 40 12 chr12 70262683 70262856 -73523599 + Charlie2a DNA MER1_type 1482 1659 -1203 313 269 46 15 chr12 70262846 70262976 -73523479 + Charlie2a DNA MER1_type 2698 2831 -31 * 1345 156 90 73 chr12 70264185 70264474 -73521981 + AluJo SINE Alu 1 294 -18 624 197 38 45 chr12 70264478 70264636 -73521819 + FLAM_A SINE Alu 2 133 0 236 267 193 47 chr12 70264638 70264788 -73521667 + MIR SINE MIR 47 218 -44 213 216 20 20 chr12 70264833 70264884 -73521571 + MIR SINE MIR 98 148 -60 1955 141 0 0 chr12 70265252 70265582 -73520873 + AluSx SINE Alu 5 334 0 425 302 38 19 chr12 70265938 70266097 -73520358 + MLT1J LTR MaLR 3 164 -347 546 228 156 63 chr12 70266142 70266379 -73520076 + MLT1J LTR MaLR 250 508 -3 454 258 36 24 chr12 70267288 70267455 -73519000 - Charlie8 DNA MER1_type -47 2370 2202 2217 134 0 0 chr12 70267490 70267803 -73518652 + AluSq SINE Alu 1 313 0 198 0 0 0 chr12 70267833 70267855 -73518600 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2113 149 3 0 chr12 70267958 70268267 -73518188 - AluSx SINE Alu -2 310 1 856 226 47 108 chr12 70268363 70268704 -73517751 - Charlie8 DNA MER1_type -325 2092 1773 2514 63 0 3 chr12 70268710 70269012 -73517443 + AluY SINE Alu 1 301 -10 13845 140 14 15 chr12 70269112 70270322 -73516133 - L1M1 LINE L1 -5413 2152 942 2298 106 6 6 chr12 70270322 70270634 -73515821 - AluSx SINE Alu 0 312 1 13845 140 14 15 chr12 70270634 70271557 -73514898 - L1M1 LINE L1 -6623 942 20 4476 227 27 39 chr12 70271661 70273136 -73513319 - L1P3 LINE L1 -4200 2261 804 413 136 57 11 chr12 70273132 70273220 -73513235 - L1M1 LINE L1 -3301 4264 4173 * 1743 81 24 54 chr12 70273240 70273422 -73513033 - L1M1 LINE L1 -4918 2647 2461 307 0 0 0 chr12 70273422 70273456 -73512999 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2098 96 3 31 chr12 70273456 70273747 -73512708 - AluSx SINE Alu -29 283 1 1743 81 24 54 chr12 70273747 70273822 -73512633 - L1M1 LINE L1 -5103 2462 2397 2696 39 0 0 chr12 70273822 70274131 -73512324 - AluYa5 SINE Alu -2 309 1 1743 81 24 54 chr12 70274131 70274169 -73512286 - L1M1 LINE L1 -5168 2397 2359 748 226 0 44 chr12 70274269 70274450 -73512005 - Charlie8 DNA MER1_type -723 1694 1522 348 274 60 84 chr12 70275545 70275913 -73510542 + L1M4 LINE L1 3094 3452 -2694 361 277 68 20 chr12 70276341 70276489 -73509966 + L2 LINE L2 3159 3313 0 1121 333 57 58 chr12 70276690 70276767 -73509688 + L3 LINE CR1 765 841 -736 2227 108 3 7 chr12 70276767 70277073 -73509382 - AluSx SINE Alu -7 305 1 1121 333 57 58 chr12 70277073 70277799 -73508656 + L3 LINE CR1 841 1567 -10 1624 205 3 0 chr12 70279119 70279412 -73507043 + AluJo SINE Alu 5 298 -14 25 51 0 0 chr12 70280551 70280590 -73505865 + AT_rich Low_complexity Low_complexity 1 39 0 2232 106 16 0 chr12 70280715 70281018 -73505437 - AluSg SINE Alu -2 308 1 182 313 0 0 chr12 70281024 70281072 -73505383 + MIR3 SINE MIR 157 204 -4 257 348 0 11 chr12 70281330 70281422 -73505033 + L2 LINE L2 3177 3267 -5 * 297 287 23 0 chr12 70281396 70281483 -73504972 + MIR SINE MIR 63 151 -111 255 280 84 37 chr12 70282134 70282241 -73504214 + L2 LINE L2 3156 3267 -5 306 201 92 150 chr12 70284432 70284481 -73501974 + L1MC5 LINE L1 7451 7501 -460 2286 128 0 0 chr12 70284481 70284793 -73501662 + AluSx SINE Alu 1 312 0 306 201 92 150 chr12 70284793 70284883 -73501572 + L1MC5 LINE L1 7501 7595 -366 2062 131 0 3 chr12 70284883 70285180 -73501275 + AluSx SINE Alu 1 296 -16 306 201 92 150 chr12 70285180 70285526 -73500929 + L1MC5 LINE L1 7595 7909 -52 460 279 82 107 chr12 70285712 70286265 -73500190 + L2 LINE L2 2566 3099 -173 535 200 107 43 chr12 70286356 70286496 -73499959 - MER106B DNA MER1_type -910 149 1 221 324 147 10 chr12 70286544 70286646 -73499809 + L2 LINE L2 3184 3299 -14 834 211 10 103 chr12 70287725 70287929 -73498526 + MER5A DNA MER1_type 1 185 -4 414 249 58 83 chr12 70288874 70288947 -73497508 - MIR SINE MIR -2 260 187 2268 98 0 7 chr12 70288947 70289242 -73497213 + AluSq SINE Alu 1 293 -20 252 86 0 0 chr12 70289242 70289277 -73497178 + (TA)n Simple_repeat Simple_repeat 1 35 0 459 0 0 0 chr12 70289276 70289327 -73497128 + (CA)n Simple_repeat Simple_repeat 2 52 0 414 249 58 83 chr12 70289277 70289457 -73496998 - MIR SINE MIR -73 189 61 351 286 60 36 chr12 70289598 70289766 -73496689 + L2 LINE L2 2722 2893 -421 196 398 47 8 chr12 70289950 70290078 -73496377 + L2 LINE L2 3139 3271 -1 326 338 44 0 chr12 70290663 70290799 -73495656 - MIR SINE MIR -84 178 37 1120 137 0 12 chr12 70290810 70290978 -73495477 - L1PB3 LINE L1 -4 6150 5985 1833 127 0 0 chr12 70292420 70292673 -73493782 + AluSx SINE Alu 1 253 -59 502 222 189 13 chr12 70293121 70293274 -73493181 + MER5A DNA MER1_type 1 180 -9 339 292 28 80 chr12 70293275 70293525 -73492930 + L1ME LINE L1 5536 5772 -349 249 217 0 17 chr12 70294719 70294779 -73491676 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 287 192 0 0 chr12 70294804 70294856 -73491599 + MLT1J LTR MaLR 1 52 -459 646 140 40 0 chr12 70294927 70295027 -73491428 + L1M1 LINE L1 1 104 -7461 852 135 0 23 chr12 70345056 70345189 -73441266 - FLAM_C SINE Alu -3 130 1 2273 117 3 0 chr12 70345217 70345517 -73440938 + AluSq SINE Alu 1 301 -12 313 309 32 0 chr12 70345567 70345661 -73440794 - MIR3 SINE MIR -3 205 109 378 42 0 0 chr12 70345694 70345742 -73440713 + (CA)n Simple_repeat Simple_repeat 2 49 0 195 184 0 0 chr12 70346494 70346532 -73439923 + CT-rich Low_complexity Low_complexity 2 39 0 2156 142 0 0 chr12 70346538 70346847 -73439608 - AluSx SINE Alu -3 309 1 432 268 74 26 chr12 70347259 70347449 -73439006 - MIR SINE MIR -2 260 62 532 283 40 0 chr12 70347654 70347806 -73438649 + L2 LINE L2 2190 2347 -967 338 178 112 28 chr12 70347911 70348018 -73438437 - Charlie2a DNA MER1_type -1273 1589 1474 240 35 0 0 chr12 70348068 70348097 -73438358 + (TGG)n Simple_repeat Simple_repeat 1 29 0 303 296 102 28 chr12 70348132 70348308 -73438147 - MLT1I LTR MaLR -123 286 98 591 112 0 0 chr12 70349527 70349616 -73436839 + (TA)n Simple_repeat Simple_repeat 2 90 0 2293 100 0 3 chr12 70349616 70349916 -73436539 - AluSg SINE Alu -11 299 1 5955 86 11 9 chr12 70351076 70352016 -73434439 - L1PB1 LINE L1 -6 6145 5204 1014 346 35 7 chr12 70352654 70353111 -73433344 - L3 LINE CR1 -1 1576 1107 29 0 0 0 chr12 70353414 70353443 -73433012 + AT_rich Low_complexity Low_complexity 1 29 0 369 215 11 36 chr12 70353776 70353869 -73432586 + MER5B DNA MER1_type 1 100 -89 197 231 154 0 chr12 70354637 70354689 -73431766 - L2 LINE L2 0 3313 3254 24 67 0 0 chr12 70355476 70355521 -73430934 + AT_rich Low_complexity Low_complexity 1 45 0 41970 38 4 6 chr12 70355606 70361771 -73424684 + L1PA4 LINE L1 4 6152 -3 1625 117 11 50 chr12 70361794 70362076 -73424379 + L1PA15 LINE L1 5895 6165 0 2464 60 0 10 chr12 70362221 70362523 -73423932 - AluY SINE Alu -12 299 1 336 214 82 10 chr12 70362962 70363060 -73423395 + MER117 DNA MER1_type 44 148 -49 326 272 191 19 chr12 70363541 70363697 -73422758 + MIR3 SINE MIR 15 202 -6 2187 116 0 23 chr12 70364140 70364443 -73422012 - AluSx SINE Alu -16 296 1 854 289 161 11 chr12 70364443 70364796 -73421659 - L2 LINE L2 -6 3307 2902 189 0 0 0 chr12 70365164 70365185 -73421270 + (TAGTG)n Simple_repeat Simple_repeat 1 21 0 448 271 254 11 chr12 70365195 70365376 -73421079 + MIR SINE MIR 28 252 -10 186 398 53 20 chr12 70365465 70365709 -73420746 + L2 LINE L2 1099 1350 -1964 2477 140 10 0 chr12 70365817 70366230 -73420225 - L1MA2 LINE L1 0 6304 5888 317 148 66 0 chr12 70366464 70366525 -73419930 - MER20 DNA MER1_type -154 65 1 499 341 63 45 chr12 70366711 70367371 -73419084 + L2 LINE L2 1815 3271 -1 1059 295 83 76 chr12 70367420 70368190 -73418265 + L2 LINE L2 2342 3139 -174 1725 152 21 28 chr12 70368190 70368480 -73417975 - AluJb SINE Alu -23 289 2 1059 295 83 76 chr12 70368480 70368654 -73417801 + L2 LINE L2 3139 3310 -3 784 197 42 84 chr12 70368793 70369079 -73417376 + MER31A LTR ERV1 1 418 -96 2229 118 0 31 chr12 70369079 70369402 -73417053 - AluSq SINE Alu 0 313 1 784 197 42 84 chr12 70369402 70369492 -73416963 + MER31A LTR ERV1 418 510 -4 2860 10 0 0 chr12 70369851 70370161 -73416294 + AluYb8 SINE Alu 1 310 -8 465 314 24 24 chr12 70371410 70371579 -73414876 + MIR3 SINE MIR 23 191 -17 249 353 132 37 chr12 70374273 70374932 -73411523 + L2 LINE L2 2491 3271 -1 192 312 43 97 chr12 70375631 70375666 -73410789 + L3b LINE CR1 1290 1325 -258 2603 44 0 13 chr12 70375666 70375981 -73410474 + AluY SINE Alu 1 311 0 192 312 43 97 chr12 70375981 70376131 -73410324 + L3b LINE CR1 1325 1465 -118 26 101 0 0 chr12 70376193 70376282 -73410173 + AT_rich Low_complexity Low_complexity 1 89 0 542 284 32 53 chr12 70377037 70377319 -73409136 - AluJb SINE Alu 0 312 37 1575 243 100 25 chr12 70377480 70378224 -73408231 + L2 LINE L2 2509 3313 0 225 234 0 117 chr12 70378365 70378442 -73408013 + MIR SINE MIR 2 69 -193 973 243 38 8 chr12 70378487 70378726 -73407729 - MIR SINE MIR -14 248 3 207 309 48 0 chr12 70378728 70378812 -73407643 + MIR SINE MIR 172 259 -3 182 36 0 36 chr12 70378882 70378910 -73407545 + (TA)n Simple_repeat Simple_repeat 2 28 0 2655 162 44 44 chr12 70379305 70379570 -73406885 + MER44D DNA MER2_type 2 266 -2221 1991 153 14 0 chr12 70379570 70379865 -73406590 - AluJo SINE Alu -13 299 1 2655 162 44 44 chr12 70379865 70379979 -73406476 + MER44D DNA MER2_type 266 379 -2108 2030 147 0 0 chr12 70379979 70380272 -73406183 - AluJb SINE Alu -19 293 1 2655 162 44 44 chr12 70380272 70380440 -73406015 + MER44D DNA MER2_type 378 605 0 216 0 0 0 chr12 70380916 70380940 -73405515 + (T)n Simple_repeat Simple_repeat 1 24 0 209 290 16 0 chr12 70381569 70381631 -73404824 + L2 LINE L2 3165 3227 -86 1843 110 10 73 chr12 70382142 70382483 -73403972 - AluSx SINE Alu 0 322 1 27 29 0 0 chr12 70385027 70385061 -73401394 + AT_rich Low_complexity Low_complexity 1 34 0 198 217 65 0 chr12 70385666 70385712 -73400743 - L2 LINE L2 0 3313 3265 297 282 64 23 chr12 70386778 70386998 -73399457 + L1 LINE L1 4297 4525 -1621 498 288 0 8 chr12 70387007 70387132 -73399323 - L2 LINE L2 -23 3290 3167 4766 190 35 40 chr12 70387148 70387578 -73398877 + L1MD1 LINE L1 4319 4750 -1492 1611 174 31 31 chr12 70387578 70387865 -73398590 + AluJb SINE Alu 1 287 -25 4766 190 35 40 chr12 70387865 70389368 -73397087 + L1MD1 LINE L1 4750 6237 -5 386 253 30 10 chr12 70389378 70389477 -73396978 - MER5B DNA MER1_type -67 111 11 1011 174 30 4 chr12 70389477 70389707 -73396748 + MER119 DNA MER1_type 348 583 0 260 235 0 37 chr12 70389783 70389864 -73396591 - MLT1J LTR MaLR -332 179 102 307 250 24 12 chr12 70390495 70390579 -73395876 + L2 LINE L2 3227 3311 -2 447 318 32 0 chr12 70391554 70391708 -73394747 + MIR SINE MIR 96 254 -8 229 369 54 23 chr12 70392521 70392651 -73393804 - L2 LINE L2 -5 3267 3134 198 0 0 0 chr12 70392943 70392965 -73393490 + (T)n Simple_repeat Simple_repeat 1 22 0 1809 145 0 21 chr12 70393083 70393365 -73393090 - AluJb SINE Alu 0 312 37 313 248 124 25 chr12 70395282 70395403 -73391052 - MIR SINE MIR -3 259 127 609 270 115 0 chr12 70395405 70395579 -73390876 - MIR SINE MIR -67 195 2 21 71 0 0 chr12 70398740 70398782 -73387673 + AT_rich Low_complexity Low_complexity 1 42 0 1518 161 63 28 chr12 70398964 70399249 -73387206 - AluJo SINE Alu -17 295 1 534 276 89 8 chr12 70399454 70399659 -73386796 + MIR SINE MIR 25 233 -29 1323 275 122 26 chr12 70399903 70400079 -73386376 + L2 LINE L2 2560 2718 -595 2209 125 0 0 chr12 70400079 70400376 -73386079 - AluSq SINE Alu -16 297 1 1323 275 122 26 chr12 70400376 70400872 -73385583 + L2 LINE L2 2718 3313 0 885 303 44 4 chr12 70401638 70401889 -73384566 - MIR SINE MIR 0 262 2 1663 110 0 0 chr12 70404297 70404515 -73381940 + AluSg/x SINE Alu 85 302 -8 25 75 0 0 chr12 70406146 70406199 -73380256 + AT_rich Low_complexity Low_complexity 1 53 0 296 211 13 0 chr12 70406514 70406590 -73379865 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 2365 88 20 3 chr12 70406630 70406936 -73379519 - AluSq SINE Alu -1 312 2 308 360 43 21 chr12 70407283 70407469 -73378986 + L2 LINE L2 3079 3268 -4 204 158 0 0 chr12 70407509 70407547 -73378908 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 363 154 0 0 chr12 70407553 70407618 -73378837 + GA-rich Low_complexity Low_complexity 3 67 0 228 269 0 0 chr12 70407611 70407704 -73378751 + (TGGA)n Simple_repeat Simple_repeat 2 94 0 * 465 363 50 58 chr12 70407759 70408101 -73378354 + L2 LINE L2 2934 3272 0 1010 243 105 9 chr12 70409692 70410025 -73376430 + MLT1J LTR MaLR 3 367 -144 319 341 110 11 chr12 70410783 70410965 -73375490 + MIR3 SINE MIR 3 202 -6 685 307 135 35 chr12 70411475 70412193 -73374262 + L2 LINE L2 2247 3056 -257 1145 237 101 30 chr12 70412373 70412837 -73373618 - LTR33 LTR ERVL 0 521 25 1117 159 44 40 chr12 70413018 70413245 -73373210 + L1MB5 LINE L1 5939 6166 -8 187 268 18 18 chr12 70413580 70413636 -73372819 + MER5A DNA MER1_type 8 63 -126 240 308 0 0 chr12 70413922 70413987 -73372468 - L2 LINE L2 -17 3255 3191 33160 79 8 62 chr12 70414224 70420727 -73365728 + L1PA5 LINE L1 12 6147 -7 183 156 0 0 chr12 70420735 70420767 -73365688 + A-rich Low_complexity Low_complexity 1 32 0 15239 90 1 1 chr12 70420801 70423802 -73362653 + L1PA7 LINE L1 3179 6153 -1 24 0 0 0 chr12 70424993 70425017 -73361438 + AT_rich Low_complexity Low_complexity 1 24 0 1032 228 80 47 chr12 70425366 70425555 -73360900 - L1ME3A LINE L1 -5 6165 5984 2727 10 0 0 chr12 70425555 70425852 -73360603 - AluYa5 SINE Alu -14 297 1 1032 228 80 47 chr12 70425852 70426097 -73360358 - L1ME3A LINE L1 -186 5984 5749 3459 115 28 12 chr12 70426097 70426669 -73359786 + L1MA4 LINE L1 5715 6295 -5 1032 228 80 47 chr12 70426669 70427105 -73359350 - L1ME3A LINE L1 -421 5749 5266 36 40 0 0 chr12 70427105 70427155 -73359300 + AT_rich Low_complexity Low_complexity 1 50 0 760 268 98 10 chr12 70427160 70427560 -73358895 - L1ME3A LINE L1 -874 5272 4838 306 250 105 41 chr12 70427625 70427797 -73358658 - L1ME3A LINE L1 -1301 4845 4663 28 0 0 0 chr12 70427959 70427987 -73358468 + AT_rich Low_complexity Low_complexity 1 28 0 2076 133 16 48 chr12 70428082 70428458 -73357997 + THE1B LTR MaLR 1 364 0 1957 162 3 3 chr12 70428486 70428783 -73357672 - AluJo SINE Alu -14 298 2 5751 165 12 5 chr12 70428931 70430010 -73356445 + L1P LINE L1 1744 2830 -3316 214 377 54 23 chr12 70430194 70430324 -73356131 - L2 LINE L2 -5 3267 3134 1493 188 59 14 chr12 70430615 70430786 -73355669 - AluJo SINE Alu -10 302 111 198 0 0 0 chr12 70430786 70430808 -73355647 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1493 188 59 14 chr12 70430808 70430924 -73355531 - AluJo SINE Alu -201 111 2 284 280 60 20 chr12 70431458 70431558 -73354897 - MIR SINE MIR -42 220 117 235 150 33 17 chr12 70432350 70432410 -73354045 + CT-rich Low_complexity Low_complexity 4 64 0 299 318 103 0 chr12 70432421 70432528 -73353927 - L2 LINE L2 -16 3297 3180 22077 137 23 14 chr12 70432534 70437204 -73349251 + L1MA3 LINE L1 15 4788 -2936 2013 134 42 33 chr12 70437204 70437563 -73348892 - THE1B LTR MaLR 0 364 3 22077 137 23 14 chr12 70437563 70440527 -73345928 + L1MA3 LINE L1 4788 7724 0 247 310 14 0 chr12 70440695 70440766 -73345689 + MIR3 SINE MIR 90 161 -47 736 200 197 70 chr12 70440783 70440857 -73345598 - HsTC2 DNA Tc2 -3 1895 1832 1633 161 7 48 chr12 70440857 70441172 -73345283 + AluJb SINE Alu 3 305 0 736 200 197 70 chr12 70441172 70441488 -73344967 - HsTC2 DNA Tc2 -66 1832 1284 2184 118 71 24 chr12 70441781 70442162 -73344293 - Tigger2a DNA MER2_type -35 399 1 285 250 16 40 chr12 70442163 70442287 -73344168 + (TA)n Simple_repeat Simple_repeat 1 121 0 15122 146 13 7 chr12 70442693 70446121 -73340334 + L1PA11 LINE L1 2719 6172 -2 22 35 0 0 chr12 70447079 70447108 -73339347 + AT_rich Low_complexity Low_complexity 1 29 0 252 238 0 62 chr12 70447152 70447209 -73339246 + L3 LINE CR1 709 761 -816 2213 120 13 0 chr12 70447209 70447510 -73338945 + AluSx SINE Alu 1 305 -7 252 238 0 62 chr12 70447510 70447532 -73338923 + L3 LINE CR1 761 783 -794 274 222 111 0 chr12 70447633 70447705 -73338750 - MER5B DNA MER1_type -98 80 1 295 276 51 31 chr12 70448968 70449066 -73337389 + MIR SINE MIR 47 146 -62 1712 166 3 49 chr12 70449072 70449397 -73337058 + AluJo SINE Alu 1 310 -2 241 311 34 34 chr12 70449430 70449549 -73336906 + MIR SINE MIR 138 256 -6 335 213 24 16 chr12 70451284 70451411 -73335044 + GA-rich Low_complexity Low_complexity 4 131 0 479 288 92 96 chr12 70451545 70452056 -73334399 - L2 LINE L2 -1 3312 2804 3476 56 0 7 chr12 70452258 70452708 -73333747 + LTR7 LTR ERV1 2 448 -2 181 247 86 25 chr12 70452816 70452897 -73333558 + L3b LINE CR1 1214 1299 -284 275 306 208 6 chr12 70452909 70453092 -73333363 + MIR SINE MIR 17 236 -26 237 350 146 15 chr12 70453945 70454082 -73332373 - L2 LINE L2 -1 3271 3117 1701 153 27 30 chr12 70454202 70454502 -73331953 + AluJb SINE Alu 1 299 -13 432 212 302 6 chr12 70454613 70454792 -73331663 - MIR SINE MIR -30 232 1 22 35 0 0 chr12 70455731 70455760 -73330695 + AT_rich Low_complexity Low_complexity 1 29 0 241 298 24 12 chr12 70456625 70456709 -73329746 - MIR3 SINE MIR -13 195 111 2187 163 75 0 chr12 70457034 70457432 -73329023 + MSTA LTR MaLR 1 428 0 2222 187 75 101 chr12 70457516 70458248 -73328207 + MER50 LTR ERV1 22 734 0 469 272 74 56 chr12 70458558 70458881 -73327574 - MER102a DNA MER1_type 0 330 2 299 296 0 11 chr12 70459169 70459257 -73327198 - MER117 DNA MER1_type -110 87 1 1675 250 80 52 chr12 70459493 70460056 -73326399 + MLT1E2 LTR MaLR 19 624 0 2602 247 59 14 chr12 70460255 70461156 -73325299 + L1ME3A LINE L1 5227 6168 -2 2519 72 0 0 chr12 70461624 70461928 -73324527 + AluY SINE Alu 1 304 -7 811 236 0 6 chr12 70462227 70462405 -73324050 - FRAM SINE Alu -2 174 1 652 254 97 6 chr12 70463839 70464004 -73322451 - MIR SINE MIR -51 211 32 3217 76 37 0 chr12 70464067 70464503 -73321952 + L1PA11 LINE L1 5723 6174 0 202 167 95 0 chr12 70464631 70464673 -73321782 - L2 LINE L2 -4 3309 3264 * 380 259 112 0 chr12 70464642 70464758 -73321697 - MIR SINE MIR -13 249 121 * 1011 275 75 21 chr12 70464756 70465130 -73321325 + L2 LINE L2 2015 2408 -906 606 254 1 34 chr12 70465399 70465534 -73320921 + L1ME LINE L1 5357 5486 -684 2516 106 28 14 chr12 70465534 70465893 -73320562 + THE1B LTR MaLR 1 364 0 606 254 1 34 chr12 70465893 70465958 -73320497 + L1ME LINE L1 5486 5552 -618 227 313 0 0 chr12 70466111 70466178 -73320277 + MLT1K LTR MaLR 183 249 -339 1774 118 109 32 chr12 70466396 70466744 -73319711 + THE1C LTR MaLR 1 375 0 1261 98 5 5 chr12 70466746 70466940 -73319515 + THE1C-int LTR MaLR 3 196 -1384 300 274 44 15 chr12 70467294 70467429 -73319026 + L1ME LINE L1 5456 5594 -527 265 279 108 67 chr12 70467545 70468222 -73318233 - L1M4 LINE L1 -1155 4991 4287 357 259 162 71 chr12 70468502 70468799 -73317656 + L2 LINE L2 2990 3313 0 307 355 103 13 chr12 70468872 70469027 -73317428 - MIR SINE MIR -58 204 36 260 229 12 0 chr12 70469057 70469140 -73317315 + GA-rich Low_complexity Low_complexity 3 86 0 555 196 58 29 chr12 70471464 70471602 -73314853 + MIR SINE MIR 121 262 0 19106 55 8 6 chr12 70472529 70475791 -73310664 - L1PA5 LINE L1 -2 6152 2884 1183 45 0 0 chr12 70475791 70475947 -73310508 + L1PA5 LINE L1 2712 2867 -3279 2097 118 0 0 chr12 70477600 70477888 -73308567 + AluSg SINE Alu 6 293 -17 582 254 96 64 chr12 70478194 70478474 -73307981 - HsTC2b DNA Tc2 -592 323 35 255 61 0 0 chr12 70478500 70478533 -73307922 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1644 164 36 7 chr12 70478535 70478809 -73307646 - AluJo SINE Alu -30 282 1 483 246 25 0 chr12 70479039 70479157 -73307298 + MER69 DNA AcHobo 27 147 -2379 382 161 0 49 chr12 70479154 70479235 -73307220 + MER69 DNA AcHobo 2450 2526 0 * 233 279 196 30 chr12 70479288 70479456 -73306999 - MIR3 SINE MIR -66 142 6 194 348 108 25 chr12 70481036 70481194 -73305261 - L3 LINE CR1 -13 1564 1394 461 223 19 10 chr12 70481306 70481409 -73305046 + MLT1E LTR MaLR 26 129 -464 264 242 33 11 chr12 70481427 70481518 -73304937 + (TA)n Simple_repeat Simple_repeat 2 94 0 1322 209 80 11 chr12 70481575 70481862 -73304593 + MLT1E LTR MaLR 284 590 -3 585 229 176 6 chr12 70481863 70482033 -73304422 - MIR SINE MIR -49 213 15 243 325 61 9 chr12 70482320 70482434 -73304021 - L3 LINE CR1 -243 1334 1215 314 287 12 24 chr12 70482879 70483046 -73303409 - L1MC4a LINE L1 -1921 5887 5723 1675 128 66 28 chr12 70483181 70483470 -73302985 - AluSx SINE Alu -12 300 1 406 330 210 13 chr12 70484587 70484896 -73301559 + L3 LINE CR1 418 787 -790 323 321 86 29 chr12 70484910 70485050 -73301405 + MIR SINE MIR 4 151 -111 866 288 155 42 chr12 70485232 70485780 -73300675 + L3 LINE CR1 864 1473 -104 1645 190 3 17 chr12 70486066 70486356 -73300099 + AluJo SINE Alu 1 286 -26 656 184 0 0 chr12 70486521 70486630 -73299825 + AluSq/x SINE Alu 4 112 -201 42507 34 1 1 chr12 70486666 70492808 -73293647 + L1PA3 LINE L1 2 6144 -11 1024 124 7 0 chr12 70492810 70492955 -73293500 + AluSp SINE Alu 121 266 -47 629 278 63 20 chr12 70493139 70493394 -73293061 + L2 LINE L2 1240 1505 -1809 25 31 0 0 chr12 70493434 70493466 -73292989 + AT_rich Low_complexity Low_complexity 1 32 0 6431 45 2 7 chr12 70493501 70494320 -73292135 - L1PA2 LINE L1 -1 6154 5340 2626 287 134 13 chr12 70494321 70495497 -73290958 + L2 LINE L2 1571 2889 -425 667 302 34 93 chr12 70495522 70496019 -73290436 + L2 LINE L2 2840 3307 -6 27 29 0 0 chr12 70496395 70496429 -73290026 + AT_rich Low_complexity Low_complexity 1 34 0 329 252 24 138 chr12 70497013 70497095 -73289360 + MIR SINE MIR 50 140 -122 2188 112 0 14 chr12 70497095 70497423 -73289032 + AluSg SINE Alu 5 328 0 329 252 24 138 chr12 70497423 70497548 -73288907 + MIR SINE MIR 140 235 -27 435 87 0 0 chr12 70497597 70497666 -73288789 + (TC)n Simple_repeat Simple_repeat 2 70 0 251 231 41 83 chr12 70498076 70498197 -73288258 - MER113 DNA MER1_type? -401 120 5 677 268 45 18 chr12 70499389 70499609 -73286846 - L2 LINE L2 0 3313 3088 1798 179 16 7 chr12 70500018 70500326 -73286129 - AluJb SINE Alu 0 312 2 2452 81 0 3 chr12 70502189 70502496 -73283959 + AluY SINE Alu 1 306 -5 1436 109 25 63 chr12 70502766 70503004 -73283451 - MER30 DNA MER1_type -1 229 1 183 42 0 0 chr12 70505146 70505170 -73281285 + (TTA)n Simple_repeat Simple_repeat 1 24 0 227 270 48 0 chr12 70505513 70505576 -73280879 + MIR SINE MIR 123 188 -74 290 305 176 15 chr12 70508183 70508314 -73278141 - MIR3 SINE MIR -41 167 16 231 239 0 0 chr12 70508799 70508845 -73277610 + L2 LINE L2 3258 3303 -10 1839 161 13 19 chr12 70511375 70511685 -73274770 - AluJo SINE Alu -4 308 1 560 214 170 0 chr12 70511925 70512084 -73274371 + MER5A DNA MER1_type 4 189 0 222 37 0 0 chr12 70513576 70513603 -73272852 + (TA)n Simple_repeat Simple_repeat 1 27 0 226 330 19 29 chr12 70515038 70515141 -73271314 - MIR SINE MIR 0 262 161 285 370 133 5 chr12 70515276 70515487 -73270968 - MIR SINE MIR -24 238 1 276 30 0 0 chr12 70515517 70515550 -73270905 + (GA)n Simple_repeat Simple_repeat 1 33 0 2053 130 13 0 chr12 70516855 70517156 -73269299 - AluSx SINE Alu -7 305 1 529 235 189 0 chr12 70517225 70517357 -73269098 + MIR SINE MIR 64 220 -42 239 0 32 0 chr12 70517458 70517489 -73268966 + (TTA)n Simple_repeat Simple_repeat 3 34 0 271 311 6 90 chr12 70517596 70517763 -73268692 - MIR SINE MIR -108 154 2 318 245 0 0 chr12 70518726 70518824 -73267631 + (TA)n Simple_repeat Simple_repeat 2 99 0 277 250 0 0 chr12 70571874 70571942 -73214513 + MER103 DNA DNA 3 70 -96 2240 118 0 3 chr12 70571965 70572269 -73214186 + AluSq SINE Alu 1 303 -10 305 317 57 0 chr12 70572389 70572512 -73213943 + MER94 DNA DNA 5 134 0 427 309 38 29 chr12 70572561 70572771 -73213684 + L3 LINE CR1 1229 1440 -137 265 336 53 9 chr12 70573234 70573347 -73213108 - MIR3 SINE MIR -23 185 68 14243 127 49 7 chr12 70573491 70574673 -73211782 - Tigger1 DNA MER2_type 0 2418 1287 1917 114 15 11 chr12 70574673 70574945 -73211510 - AluSx SINE Alu -13 299 27 14243 127 49 7 chr12 70574945 70576082 -73210373 - Tigger1 DNA MER2_type -1131 1287 1 2462 103 0 0 chr12 70576593 70576951 -73209504 - AluSx SINE Alu 0 358 1 1797 163 0 43 chr12 70578348 70578673 -73207782 + AluJb SINE Alu 1 297 -15 523 272 50 55 chr12 70578944 70578994 -73207461 - MIR3 SINE MIR -3 205 156 418 252 99 54 chr12 70578994 70579236 -73207219 + MER112 DNA MER1_type 1 253 -3 523 272 50 55 chr12 70579236 70579387 -73207068 - MIR3 SINE MIR -52 156 5 241 47 47 0 chr12 70579806 70579849 -73206606 + (CAA)n Simple_repeat Simple_repeat 1 45 0 480 242 46 68 chr12 70580646 70580969 -73205486 + MLT1H LTR MaLR 132 409 0 1004 259 26 71 chr12 70581550 70581928 -73204527 - MLT1J LTR MaLR -8 503 143 742 186 0 16 chr12 70582391 70582520 -73203935 - FLAM_A SINE Alu -2 131 5 373 230 67 84 chr12 70582737 70582915 -73203540 - MIR SINE MIR -30 232 58 2303 76 0 3 chr12 70582920 70583211 -73203244 - AluY SINE Alu -21 290 1 180 0 0 0 chr12 70584039 70584059 -73202396 + (A)n Simple_repeat Simple_repeat 1 20 0 636 85 11 0 chr12 70585032 70585126 -73201329 + L1MB3 LINE L1 6082 6176 -7 472 113 0 0 chr12 70585389 70585451 -73201004 + Tigger2 DNA MER2_type 1 62 -2656 2326 135 50 68 chr12 70585458 70585606 -73200849 + Tigger2 DNA MER2_type 2280 2429 -289 1521 191 4 11 chr12 70585606 70585873 -73200582 + AluJb SINE Alu 1 265 -47 197 33 33 0 chr12 70585881 70585911 -73200544 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2326 135 50 68 chr12 70585911 70586196 -73200259 + Tigger2 DNA MER2_type 2436 2714 -4 543 155 0 0 chr12 70586374 70586458 -73199997 - FLAM_A SINE Alu -26 116 33 758 251 117 75 chr12 70586585 70587055 -73199400 + MLT1J LTR MaLR 1 490 -21 220 286 13 0 chr12 70588278 70588355 -73198100 - MIR SINE MIR -1 261 184 571 265 90 5 chr12 70588563 70588763 -73197692 - MIR SINE MIR -43 219 3 191 286 0 0 chr12 70590087 70590129 -73196326 + L2 LINE L2 3222 3263 -9 310 293 60 121 chr12 70591092 70591440 -73195015 - L2 LINE L2 0 3272 2946 197 234 0 21 chr12 70591580 70591627 -73194828 - MIR SINE MIR -111 151 106 661 294 58 32 chr12 70592456 70592703 -73193752 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 70593470 70593491 -73192964 + AT_rich Low_complexity Low_complexity 1 21 0 2129 141 44 6 chr12 70593793 70594154 -73192301 + THE1C LTR MaLR 1 375 0 1466 148 34 4 chr12 70594459 70594722 -73191733 - L1MC1 LINE L1 -1 6332 6062 2292 66 40 20 chr12 70594742 70595045 -73191410 - AluY SINE Alu -2 309 1 233 324 144 9 chr12 70595234 70595345 -73191110 + L2 LINE L2 3147 3272 0 830 281 85 63 chr12 70595378 70595873 -73190582 + Charlie8 DNA MER1_type 1 506 -1911 238 209 0 0 chr12 70595906 70595949 -73190506 + Charlie8 DNA MER1_type 1383 1425 -992 986 73 0 0 chr12 70597625 70597749 -73188706 + AluY SINE Alu 180 303 -8 1541 190 73 0 chr12 70597773 70597887 -73188568 + AluJo SINE Alu 1 105 -207 263 27 0 27 chr12 70597887 70597924 -73188531 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1541 190 73 0 chr12 70597924 70598098 -73188357 + AluJo SINE Alu 105 310 -2 1217 274 108 21 chr12 70598141 70598575 -73187880 + L2 LINE L2 2842 3313 0 259 212 24 0 chr12 70600030 70600115 -73186340 + (TA)n Simple_repeat Simple_repeat 2 88 0 879 193 116 0 chr12 70601142 70601323 -73185132 + MER105 DNA DNA 2 203 -1 485 254 8 0 chr12 70603137 70603255 -73183200 + MER103 DNA DNA 2 120 -46 1394 215 34 13 chr12 70604167 70604465 -73181990 - AluJb SINE Alu -8 304 1 2207 239 93 8 chr12 70604471 70605114 -73181341 - L1ME3A LINE L1 -5 6165 5468 23 54 0 0 chr12 70605327 70605364 -73181091 + AT_rich Low_complexity Low_complexity 1 37 0 27 87 0 0 chr12 70605620 70605689 -73180766 + AT_rich Low_complexity Low_complexity 1 69 0 780 301 150 25 chr12 70605747 70606388 -73180067 - HAL1 LINE L1 -630 1877 1157 310 284 9 95 chr12 70606396 70606607 -73179848 - HAL1 LINE L1 -1398 1109 917 1134 154 42 133 chr12 70607794 70608126 -73178329 + AluJb SINE Alu 1 302 0 1780 105 101 4 chr12 70608288 70608573 -73177882 + AluSx SINE Alu 1 310 0 314 376 68 25 chr12 70608579 70608741 -73177714 - L2 LINE L2 -2 3270 3102 1662 187 99 0 chr12 70608796 70609159 -73177296 + MER63B DNA MER1_type 1 399 -37 522 261 83 61 chr12 70609793 70610057 -73176398 - MLT1K LTR MaLR -8 580 311 641 257 11 11 chr12 70610151 70610326 -73176129 + MER5B DNA MER1_type 4 178 0 298 329 101 24 chr12 70610526 70610854 -73175601 + L2 LINE L2 1596 1948 -1366 661 236 87 0 chr12 70612315 70612476 -73173979 + MIR SINE MIR 84 258 -4 273 182 0 0 chr12 70615349 70615393 -73171062 + L2 LINE L2 3262 3305 -8 222 270 0 32 chr12 70615711 70615774 -73170681 - L2 LINE L2 -4 3268 3208 23 0 0 0 chr12 70617147 70617170 -73169285 + AT_rich Low_complexity Low_complexity 1 23 0 185 287 74 56 chr12 70617462 70617570 -73168885 + L3 LINE CR1 1057 1166 -411 207 100 0 0 chr12 70618602 70618632 -73167823 + (A)n Simple_repeat Simple_repeat 1 30 0 265 258 52 113 chr12 70620940 70621134 -73165321 - MIR3 SINE MIR -12 196 15 686 239 112 10 chr12 70622957 70623154 -73163301 + MIR SINE MIR 3 219 -43 2103 114 0 0 chr12 70623593 70623873 -73162582 + AluSx SINE Alu 1 280 -32 303 140 0 0 chr12 70623873 70623923 -73162532 + (CGAAA)n Simple_repeat Simple_repeat 2 51 0 501 244 81 86 chr12 70624773 70625007 -73161448 + L2 LINE L2 3081 3313 0 1716 154 11 21 chr12 70625807 70626134 -73160321 + AluJb SINE Alu 1 324 0 187 347 13 0 chr12 70626514 70626589 -73159866 - L2 LINE L2 -23 3249 3174 1492 285 77 26 chr12 70626709 70627256 -73159199 + MLT1K LTR MaLR 13 587 -1 290 279 101 0 chr12 70627257 70627336 -73159119 + MIR3 SINE MIR 109 195 -13 564 131 30 0 chr12 70627525 70627624 -73158831 - L1M2 LINE L1 -712 5588 5487 467 263 190 19 chr12 70629324 70629529 -73156926 + MIR SINE MIR 2 241 -21 302 260 70 10 chr12 70629542 70629642 -73156813 + MIR SINE MIR 157 262 0 833 297 28 16 chr12 70629766 70630086 -73156369 + MER102b DNA MER1_type 10 333 -8 658 222 11 60 chr12 70630585 70630770 -73155685 - MER91B DNA MER1_type 0 190 15 353 176 20 49 chr12 70630884 70630986 -73155469 - L1MD3 LINE L1 0 7995 7897 257 240 164 10 chr12 70631119 70631223 -73155232 + MIR SINE MIR 117 236 -26 2252 79 17 0 chr12 70633131 70633257 -73153198 + AluY SINE Alu 1 123 -188 185 0 40 0 chr12 70633257 70633282 -73153173 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2252 79 17 0 chr12 70633282 70633445 -73153010 + AluY SINE Alu 123 295 -16 283 148 0 56 chr12 70633667 70633721 -73152734 + L2 LINE L2 3262 3312 -1 237 336 86 23 chr12 70635743 70635871 -73150584 - L2 LINE L2 -51 3221 3086 1160 130 6 0 chr12 70635931 70636108 -73150347 + THE1C LTR MaLR 1 178 -197 262 279 72 9 chr12 70636260 70636371 -73150084 + THE1C LTR MaLR 238 355 0 362 330 60 54 chr12 70636883 70637130 -73149325 - L2 LINE L2 -338 2976 2723 970 184 0 17 chr12 70637130 70637304 -73149151 - FAM SINE Alu 0 175 5 362 330 60 54 chr12 70637304 70637522 -73148933 - L2 LINE L2 -591 2723 2508 440 291 98 44 chr12 70637611 70637814 -73148641 - MIR SINE MIR -25 237 24 189 235 0 0 chr12 70638436 70638470 -73147985 + L2 LINE L2 3270 3303 -10 286 358 89 24 chr12 70639966 70640416 -73146039 - L2 LINE L2 -456 2858 2380 411 163 0 43 chr12 70640558 70640650 -73145805 + L1MB4 LINE L1 6059 6146 -34 442 301 145 31 chr12 70640849 70641292 -73145163 + L1M4 LINE L1 4967 5463 -715 6474 114 48 5 chr12 70642003 70643706 -73142749 + L1PA8A LINE L1 4392 6131 0 215 40 0 0 chr12 70644199 70644224 -73142231 + (A)n Simple_repeat Simple_repeat 1 25 0 23 68 0 0 chr12 70645322 70645366 -73141089 + AT_rich Low_complexity Low_complexity 1 44 0 858 111 0 8 chr12 70645374 70645500 -73140955 - L1PA8 LINE L1 -6 6166 6042 227 276 179 24 chr12 70645962 70646085 -73140370 + L3 LINE CR1 646 787 -790 499 219 125 77 chr12 70646093 70646404 -73140051 + MER46C DNA MER2_type 10 335 -3 1463 189 57 0 chr12 70646591 70646888 -73139567 - L1MC3 LINE L1 -357 7428 7115 25 75 0 0 chr12 70648042 70648095 -73138360 + AT_rich Low_complexity Low_complexity 1 53 0 336 309 139 24 chr12 70649356 70649521 -73136934 + MIR SINE MIR 49 232 -30 233 342 51 0 chr12 70649562 70649641 -73136814 + L2 LINE L2 3129 3211 -61 283 284 98 0 chr12 70650001 70650103 -73136352 - L2 LINE L2 -10 3303 3192 245 357 1 1 chr12 70650125 70650240 -73136215 + MER5A DNA MER1_type 15 131 -49 419 376 59 41 chr12 70650252 70650590 -73135865 + L2 LINE L2 2921 3264 -8 512 110 0 65 chr12 70651511 70651666 -73134789 + (TCCA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr12 70652148 70652180 -73134275 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 450 0 0 0 chr12 70652179 70652229 -73134226 + (GA)n Simple_repeat Simple_repeat 1 50 0 272 322 91 0 chr12 70652229 70652350 -73134105 + L2 LINE L2 3178 3309 -4 587 154 11 0 chr12 70655726 70655817 -73130638 - AluSg/x SINE Alu -135 177 86 205 171 0 0 chr12 70656915 70656950 -73129505 + (CAT)n Simple_repeat Simple_repeat 2 36 0 2808 122 71 76 chr12 70657033 70657422 -73129033 - L1MA9 LINE L1 0 6312 5923 233 0 62 0 chr12 70657422 70657454 -73129001 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1723 189 0 3 chr12 70657454 70657739 -73128716 - AluJb SINE Alu -28 284 1 2808 122 71 76 chr12 70657739 70657891 -73128564 - L1MA9 LINE L1 -388 5924 5771 254 29 29 0 chr12 70657891 70657926 -73128529 + (CA)n Simple_repeat Simple_repeat 2 37 0 2808 122 71 76 chr12 70657926 70658013 -73128442 - L1MA9 LINE L1 -541 5771 5685 2101 120 0 17 chr12 70658820 70659111 -73127344 - AluSg SINE Alu -14 296 11 378 338 0 28 chr12 70659280 70659422 -73127033 - L2 LINE L2 -3 3310 3173 208 349 53 58 chr12 70659602 70659750 -73126705 - L2 LINE L2 -376 2938 2791 2385 85 0 7 chr12 70659750 70660055 -73126400 - AluY SINE Alu -4 307 5 208 349 53 58 chr12 70660055 70660301 -73126154 - L2 LINE L2 -523 2791 2546 362 258 129 13 chr12 70660720 70660875 -73125580 - MIR SINE MIR -1 261 89 1215 78 11 22 chr12 70661116 70661295 -73125160 + L1PA10 LINE L1 5992 6168 0 182 366 28 0 chr12 70662048 70662119 -73124336 + MIR SINE MIR 44 116 -92 458 330 38 0 chr12 70662211 70662420 -73124035 - MIR SINE MIR -10 252 36 1172 164 76 22 chr12 70663047 70663365 -73123090 - MER33 DNA MER1_type 0 324 1 238 235 165 35 chr12 70664662 70664747 -73121708 + L2 LINE L2 3168 3263 -9 339 333 68 0 chr12 70666955 70667072 -73119383 - L2 LINE L2 -2 3311 3187 492 258 155 0 chr12 70667874 70668029 -73118426 + MER5A DNA MER1_type 9 187 -2 251 260 0 83 chr12 70669213 70669309 -73117146 + MIR SINE MIR 93 180 -82 23 0 0 0 chr12 70669339 70669362 -73117093 + AT_rich Low_complexity Low_complexity 1 23 0 211 295 0 32 chr12 70669472 70669567 -73116888 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 2140 118 7 0 chr12 70669567 70669856 -73116599 - AluSx SINE Alu -21 291 1 478 228 39 31 chr12 70669882 70670009 -73116446 + MIR SINE MIR 46 173 -89 209 225 0 0 chr12 70670536 70670576 -73115879 + L2 LINE L2 3274 3313 0 310 193 12 36 chr12 70670588 70670671 -73115784 + MLT1J LTR MaLR 1 81 -430 195 385 98 16 chr12 70670705 70670827 -73115628 + L2 LINE L2 3180 3311 -2 393 239 239 0 chr12 70671278 70671445 -73115010 + MLT1J LTR MaLR 236 442 -69 25 31 0 0 chr12 70672591 70672623 -73113832 + AT_rich Low_complexity Low_complexity 1 32 0 194 147 0 0 chr12 70673090 70673124 -73113331 + L2 LINE L2 3018 3051 -221 433 302 14 7 chr12 70674744 70674883 -73111572 + MLT1J1 LTR MaLR 16 155 -291 433 258 19 75 chr12 70674908 70675121 -73111334 + MLT1J2 LTR MaLR 248 448 -2 269 289 200 0 chr12 70675266 70675356 -73111099 + L2 LINE L2 3156 3263 -9 1499 156 26 0 chr12 70677570 70677840 -73108615 - L1MB2 LINE L1 -7 6164 5888 427 256 51 87 chr12 70678225 70678420 -73108035 - MIR SINE MIR -60 202 15 5354 110 31 23 chr12 70678491 70679403 -73107052 - L1MA3 LINE L1 0 6305 5387 2661 101 0 3 chr12 70679655 70680011 -73106444 - THE1A LTR MaLR 0 355 1 11290 93 15 10 chr12 70680011 70681396 -73105059 - THE1A-int LTR MaLR 0 1580 185 2319 95 0 0 chr12 70681396 70681690 -73104765 - AluY SINE Alu -16 295 2 11290 93 15 10 chr12 70681690 70681874 -73104581 - THE1A-int LTR MaLR -1395 185 3 2478 110 8 11 chr12 70681875 70682231 -73104224 - THE1A LTR MaLR 0 355 1 215 295 161 9 chr12 70683140 70683252 -73103203 + L2 LINE L2 3139 3267 -5 995 229 9 14 chr12 70683412 70683630 -73102825 + MIR SINE MIR 20 236 -26 313 298 57 14 chr12 70684160 70684301 -73102154 - L2 LINE L2 -4 3268 3122 40 21 0 0 chr12 70684618 70684665 -73101790 + AT_rich Low_complexity Low_complexity 1 47 0 626 270 7 0 chr12 70686417 70686565 -73099890 - MIR SINE MIR 0 262 114 280 356 102 0 chr12 70686743 70686861 -73099594 - L3 LINE CR1 -2 1575 1446 304 255 82 10 chr12 70688011 70688109 -73098346 + L2 LINE L2 3133 3237 -35 633 232 66 7 chr12 70690356 70690507 -73095948 + MER5B DNA MER1_type 19 178 0 689 178 124 6 chr12 70690544 70690713 -73095742 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr12 70690756 70690777 -73095678 + AT_rich Low_complexity Low_complexity 1 21 0 303 257 250 14 chr12 70690786 70690934 -73095521 + MER5A DNA MER1_type 7 189 0 878 226 56 5 chr12 70691523 70691718 -73094737 + MIR SINE MIR 58 262 0 23 0 0 0 chr12 70692246 70692269 -73094186 + AT_rich Low_complexity Low_complexity 1 23 0 2295 102 7 3 chr12 70692346 70692651 -73093804 + AluSg SINE Alu 1 306 -4 709 291 43 4 chr12 70693537 70693767 -73092688 - MIR SINE MIR -3 259 21 1489 32 0 0 chr12 70694763 70694948 -73091507 - L1P3 LINE L1 -395 5759 5575 2429 63 0 0 chr12 70694949 70695252 -73091203 + L1PA7 LINE L1 5852 6154 0 536 309 81 48 chr12 70695865 70696237 -73090218 + L3 LINE CR1 632 1015 -562 44 20 0 0 chr12 70697196 70697247 -73089208 + AT_rich Low_complexity Low_complexity 1 51 0 385 191 112 0 chr12 70697369 70697458 -73088997 + MER103 DNA DNA 3 101 -65 392 313 84 27 chr12 70698296 70698593 -73087862 + L1MC/D LINE L1 5452 5765 -2043 1299 275 63 49 chr12 70698630 70699214 -73087241 + L2 LINE L2 2730 3312 -1 180 273 0 0 chr12 70699215 70699281 -73087174 + (CATA)n Simple_repeat Simple_repeat 1 66 0 1022 197 48 45 chr12 70699464 70699773 -73086682 + MER33 DNA MER1_type 9 318 -6 321 236 85 19 chr12 70699894 70700000 -73086455 + MIR SINE MIR 100 212 -50 485 323 189 23 chr12 70701173 70701560 -73084895 - L2 LINE L2 0 3313 2863 1307 194 56 24 chr12 70702116 70702404 -73084051 + MLT1G1 LTR MaLR 13 309 -286 606 213 52 0 chr12 70702477 70702613 -73083842 + MLT1G1 LTR MaLR 432 574 -16 495 188 23 15 chr12 70702998 70703131 -73083324 - L1MB7 LINE L1 -10 6174 6041 586 178 25 17 chr12 70703357 70703475 -73082980 + L1ME3A LINE L1 5543 5661 -509 1170 179 8 27 chr12 70703490 70703747 -73082708 + L1ME3A LINE L1 5911 6162 -8 572 325 13 0 chr12 70704093 70704250 -73082205 - MIR3 SINE MIR -13 195 37 423 254 103 45 chr12 70704291 70704515 -73081940 - MIR SINE MIR -24 238 2 1848 152 28 10 chr12 70704577 70704866 -73081589 - AluSx SINE Alu -18 294 1 600 259 83 26 chr12 70705861 70706089 -73080366 - MIR SINE MIR -17 245 5 467 304 127 37 chr12 70706235 70706534 -73079921 - L3 LINE CR1 -240 1337 1012 1736 179 10 0 chr12 70706709 70706838 -73079617 + AluJb SINE Alu 1 127 -185 429 70 0 0 chr12 70706838 70706895 -73079560 + (CATA)n Simple_repeat Simple_repeat 4 60 0 1736 179 10 0 chr12 70706895 70707055 -73079400 + AluJb SINE Alu 127 293 -19 207 184 0 0 chr12 70707227 70707265 -73079190 + A-rich Low_complexity Low_complexity 3 40 0 1995 152 0 3 chr12 70707332 70707634 -73078821 + AluJo SINE Alu 1 301 -11 1957 153 13 65 chr12 70708969 70709354 -73077101 + MLT1A1 LTR MaLR 1 365 0 368 268 91 30 chr12 70709432 70709630 -73076825 + MLT1K LTR MaLR 18 227 -361 22 35 0 0 chr12 70709759 70709788 -73076667 + AT_rich Low_complexity Low_complexity 1 29 0 1347 237 64 66 chr12 70709991 70710489 -73075966 + MLT1F1 LTR MaLR 69 565 -2 398 258 22 0 chr12 70710871 70710960 -73075495 + MIR SINE MIR 72 162 -100 34 0 0 0 chr12 70711025 70711059 -73075396 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 70712006 70712034 -73074421 + AT_rich Low_complexity Low_complexity 1 28 0 372 329 49 58 chr12 70712780 70713124 -73073331 - L2 LINE L2 -1911 1403 1063 1417 137 80 4 chr12 70713218 70713467 -73072988 - L1PB3 LINE L1 -5 6149 5882 825 169 0 88 chr12 70713800 70713960 -73072495 - AluJb SINE Alu -59 253 108 719 135 45 0 chr12 70713960 70714071 -73072384 + AluJb SINE Alu 8 123 -189 240 175 0 0 chr12 70714091 70714131 -73072324 - AluJb SINE Alu -176 126 87 401 270 95 0 chr12 70715351 70715488 -73070967 + MIR SINE MIR 79 228 -34 183 244 24 0 chr12 70715858 70715899 -73070556 - L2 LINE L2 -37 3235 3194 189 291 55 0 chr12 70716223 70716278 -73070177 + MIR3 SINE MIR 135 192 -16 315 350 66 47 chr12 70717993 70718267 -73068188 + L2 LINE L2 2993 3271 -1 27 29 0 0 chr12 70718342 70718376 -73068079 + AT_rich Low_complexity Low_complexity 1 34 0 230 265 15 29 chr12 70718981 70719049 -73067406 - MIR SINE MIR -117 145 79 395 390 0 0 chr12 70720022 70720176 -73066279 + L3 LINE CR1 1417 1570 -7 284 372 44 22 chr12 70720525 70720705 -73065750 + MIR3 SINE MIR 20 203 -5 206 372 93 0 chr12 70722665 70722751 -73063704 - MIR3 SINE MIR -25 183 90 229 268 0 14 chr12 70725962 70726033 -73060422 + A-rich Low_complexity Low_complexity 2 71 0 219 69 0 0 chr12 70727487 70727516 -73058939 + (T)n Simple_repeat Simple_repeat 1 29 0 249 288 66 22 chr12 70727659 70727810 -73058645 - MIR SINE MIR -68 140 30 2461 148 25 39 chr12 70728715 70728915 -73057540 + MSTA LTR MaLR 1 202 -226 2116 75 0 4 chr12 70728915 70729183 -73057272 + AluY SINE Alu 1 267 -44 2461 148 25 39 chr12 70729183 70729416 -73057039 + MSTA LTR MaLR 202 428 0 1773 121 81 0 chr12 70729816 70729997 -73056458 - AluSg SINE Alu -7 303 91 216 0 0 0 chr12 70729997 70730021 -73056434 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1773 121 81 0 chr12 70730021 70730111 -73056344 - AluSg SINE Alu -219 91 10 830 230 97 27 chr12 70730117 70730374 -73056081 + MER102a DNA MER1_type 38 312 -18 289 216 82 21 chr12 70731073 70731170 -73055285 - MER20B DNA MER1_type -17 766 664 1741 157 24 10 chr12 70731184 70731477 -73054978 - AluJb SINE Alu -15 297 1 21 57 0 0 chr12 70731501 70731536 -73054919 + AT_rich Low_complexity Low_complexity 1 35 0 498 290 37 74 chr12 70731692 70731797 -73054658 - MER20B DNA MER1_type -465 318 211 2222 99 3 0 chr12 70731797 70732091 -73054364 + AluSq SINE Alu 1 295 -18 498 290 37 74 chr12 70732091 70732254 -73054201 - MER20B DNA MER1_type -572 211 60 223 203 27 0 chr12 70733114 70733188 -73053267 + CT-rich Low_complexity Low_complexity 1 76 0 2058 127 0 3 chr12 70733649 70733956 -73052499 - AluSx SINE Alu 0 306 1 538 305 165 39 chr12 70734431 70734555 -73051900 - L2 LINE L2 0 3313 3206 2398 156 31 7 chr12 70734555 70734971 -73051484 - MSTB LTR MaLR 0 426 1 538 305 165 39 chr12 70734971 70735460 -73050995 - L2 LINE L2 -107 3206 2639 298 303 9 37 chr12 70735465 70735574 -73050881 - L2 LINE L2 -838 2476 2371 205 190 25 25 chr12 70735594 70735673 -73050782 + (TA)n Simple_repeat Simple_repeat 2 80 0 642 159 125 34 chr12 70735696 70735872 -73050583 + MIR SINE MIR 68 259 -3 412 254 17 66 chr12 70736039 70736213 -73050242 - L2 LINE L2 -1 3312 3146 1667 141 53 53 chr12 70736213 70736588 -73049867 - THE1C LTR MaLR 0 375 1 1777 178 0 11 chr12 70737002 70737313 -73049142 + AluJb SINE Alu 3 310 0 531 82 0 0 chr12 70737342 70737415 -73049040 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 226 331 126 0 chr12 70737572 70737699 -73048756 - MLT1J LTR MaLR -267 244 102 711 254 41 12 chr12 70737853 70738097 -73048358 + AluJb SINE Alu 35 285 -27 423 125 0 0 chr12 70738152 70738224 -73048231 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 232 320 213 10 chr12 70738382 70738579 -73047876 - MLT1J LTR MaLR -267 244 8 220 344 55 47 chr12 70738631 70738759 -73047696 + L2 LINE L2 3137 3265 -7 212 274 83 0 chr12 70738755 70738839 -73047616 - MIR SINE MIR -42 220 130 * 298 320 0 10 chr12 70739380 70739483 -73046972 + MER103 DNA DNA 18 119 -47 378 0 0 0 chr12 70739533 70739575 -73046880 + (CA)n Simple_repeat Simple_repeat 1 42 0 4958 181 93 35 chr12 70739621 70739744 -73046711 - Charlie1 DNA MER1_type -17 2744 2630 2123 124 3 13 chr12 70739744 70740043 -73046412 - AluSq SINE Alu -17 296 1 4958 181 93 35 chr12 70740043 70741138 -73045317 - Charlie1 DNA MER1_type -131 2630 1455 281 171 0 0 chr12 70741156 70741197 -73045258 - Charlie1 DNA MER1_type -2720 41 1 288 235 0 44 chr12 70741810 70741878 -73044577 - L2 LINE L2 -10 3303 3239 2280 204 34 5 chr12 70742010 70742457 -73043998 + L1MCa LINE L1 18 477 -5949 819 78 0 0 chr12 70742459 70742561 -73043894 + AluY SINE Alu 1 102 -209 5637 154 11 9 chr12 70742561 70743520 -73042935 + L1MC1 LINE L1 5371 6331 -2 342 67 0 0 chr12 70744331 70744376 -73042079 + (TG)n Simple_repeat Simple_repeat 2 46 0 4134 133 41 3 chr12 70744658 70745321 -73041134 + L1PA16 LINE L1 5470 6157 -9 524 260 58 0 chr12 70745389 70745543 -73040912 + MIR3 SINE MIR 45 207 -1 183 308 51 64 chr12 70745699 70745777 -73040678 + L2 LINE L2 3200 3276 -37 211 310 46 0 chr12 70746859 70746946 -73039509 - L3 LINE CR1 -56 1521 1431 519 225 152 7 chr12 70748156 70748307 -73038148 + MIR SINE MIR 87 259 -3 4849 57 13 2 chr12 70748455 70749082 -73037373 + L1PA7 LINE L1 5521 6154 0 1032 227 76 29 chr12 70749674 70749979 -73036476 - MLT1E LTR MaLR 0 593 304 225 0 0 0 chr12 70749979 70750004 -73036451 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 261 0 0 0 chr12 70750003 70750032 -73036423 + (GA)n Simple_repeat Simple_repeat 1 29 0 1032 227 76 29 chr12 70750004 70750264 -73036191 - MLT1E LTR MaLR -289 304 1 1233 221 63 100 chr12 70751610 70752131 -73034324 + MLT1D LTR MaLR 4 505 0 305 197 120 65 chr12 70752313 70752463 -73033992 - MIR SINE MIR -50 212 58 424 256 154 0 chr12 70752481 70752637 -73033818 - MIR SINE MIR -81 181 2 251 357 27 18 chr12 70752695 70752807 -73033648 - MIR SINE MIR -4 258 146 2032 186 39 48 chr12 70752838 70753301 -73033154 + MLT1D LTR MaLR 45 503 -2 730 174 23 8 chr12 70753303 70753435 -73033020 - MIR SINE MIR -109 153 20 1893 149 0 31 chr12 70753445 70753767 -73032688 - AluJo SINE Alu 0 312 1 341 264 55 18 chr12 70754163 70754273 -73032182 - MIR SINE MIR -79 183 70 498 273 133 0 chr12 70754360 70754525 -73031930 + MIR SINE MIR 51 237 -25 2071 119 0 26 chr12 70756498 70756809 -73029646 + AluSx SINE Alu 1 303 -9 378 250 156 8 chr12 70756818 70756946 -73029509 - MIR SINE MIR -65 197 51 677 143 8 56 chr12 70757421 70757547 -73028908 + FRAM SINE Alu 37 156 -20 3817 164 45 78 chr12 70757569 70758662 -73027793 + L1MC1 LINE L1 5124 6328 -5 367 343 94 42 chr12 70759767 70760422 -73026033 - L2 LINE L2 0 3272 2544 2067 92 31 14 chr12 70760522 70760814 -73025641 + AluSx SINE Alu 1 297 -15 278 276 31 31 chr12 70762388 70762486 -73023969 - L2 LINE L2 -5 3308 3211 22 0 0 0 chr12 70762808 70762830 -73023625 + AT_rich Low_complexity Low_complexity 1 22 0 726 231 16 0 chr12 70763548 70763730 -73022725 - MER53 DNA DNA 0 189 5 22 80 0 0 chr12 70765236 70765286 -73021169 + AT_rich Low_complexity Low_complexity 1 50 0 368 196 341 17 chr12 70765364 70765537 -73020918 + MIR SINE MIR 32 260 -2 2799 240 47 34 chr12 70766155 70767177 -73019278 + L1M4 LINE L1 4369 5403 -743 1180 113 44 0 chr12 70767185 70767389 -73019066 + L1MB2 LINE L1 5258 5470 -710 183 42 0 0 chr12 70767393 70767417 -73019038 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3579 159 24 15 chr12 70767521 70768188 -73018267 + L1MB2 LINE L1 5497 6169 -2 2123 127 0 10 chr12 70768235 70768542 -73017913 + AluSx SINE Alu 3 306 -6 512 312 140 7 chr12 70769281 70769560 -73016895 + L2 LINE L2 2272 2587 -727 1775 208 12 34 chr12 70769564 70769644 -73016811 - MER74A LTR ERVL 0 558 478 727 174 7 0 chr12 70769644 70769782 -73016673 + L1MA10 LINE L1 6187 6325 -9 1775 208 12 34 chr12 70769782 70770194 -73016261 - MER74A LTR ERVL -80 478 4 222 308 96 14 chr12 70770274 70770420 -73016035 + L2 LINE L2 2711 2868 -446 220 180 45 11 chr12 70771262 70771351 -73015104 + CT-rich Low_complexity Low_complexity 1 92 0 530 313 21 89 chr12 70771379 70771670 -73014785 - L2 LINE L2 -2 3270 3000 304 314 36 43 chr12 70771833 70771973 -73014482 + MIR3 SINE MIR 23 161 -47 854 229 0 6 chr12 70772524 70772694 -73013761 + AluJb SINE Alu 134 302 -10 284 330 45 62 chr12 70772931 70773107 -73013348 + MIR3 SINE MIR 16 188 -20 219 253 29 129 chr12 70773971 70774141 -73012314 + MIR SINE MIR 104 256 -6 289 280 144 8 chr12 70774644 70774762 -73011693 + MIR3 SINE MIR 70 203 -5 305 317 20 0 chr12 70775532 70775633 -73010822 - L1MC4 LINE L1 -1323 6719 6617 * 317 311 0 0 chr12 70775554 70775644 -73010811 + L1MC4 LINE L1 6614 6703 -1339 29 47 0 0 chr12 70775709 70775752 -73010703 + AT_rich Low_complexity Low_complexity 1 43 0 217 282 191 18 chr12 70777118 70777228 -73009227 - L2 LINE L2 -19 3294 3166 416 260 201 0 chr12 70777565 70777719 -73008736 - MIR SINE MIR -6 256 72 225 0 0 0 chr12 70778100 70778125 -73008330 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 261 333 14 68 chr12 70778448 70778595 -73007860 - MIR3 SINE MIR -54 154 16 318 297 23 8 chr12 70778907 70779035 -73007420 - MER103 DNA DNA -14 152 23 23 0 0 0 chr12 70779035 70779058 -73007397 + AT_rich Low_complexity Low_complexity 1 23 0 7259 20 38 0 chr12 70779151 70780418 -73006037 + L1PA4 LINE L1 4855 6154 -1 24 0 0 0 chr12 70780435 70780459 -73005996 + AT_rich Low_complexity Low_complexity 1 24 0 271 378 67 31 chr12 70780693 70780947 -73005508 - L2 LINE L2 -25 3247 2985 21 0 0 0 chr12 70781342 70781363 -73005092 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 70782326 70782347 -73004108 + (A)n Simple_repeat Simple_repeat 1 21 0 197 268 0 0 chr12 70783340 70783381 -73003074 + MIR SINE MIR 149 189 -73 189 350 50 0 chr12 70783607 70783707 -73002748 + L2 LINE L2 3153 3257 -15 304 300 207 0 chr12 70783735 70783885 -73002570 - MER5A DNA MER1_type 0 189 9 21 36 0 0 chr12 70784768 70784796 -73001659 + AT_rich Low_complexity Low_complexity 1 28 0 182 333 72 0 chr12 70785333 70785402 -73001053 - MIR SINE MIR -102 106 33 1092 279 65 63 chr12 70786260 70786799 -72999656 - L2 LINE L2 0 3313 2767 212 286 78 0 chr12 70786873 70786950 -72999505 - MER5C DNA MER1_type -241 83 1 258 308 0 0 chr12 70786950 70787028 -72999427 - L2 LINE L2 -508 2806 2729 1696 174 35 11 chr12 70787471 70787758 -72998697 + AluJo SINE Alu 1 294 -18 399 132 0 0 chr12 70788620 70788688 -72997767 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 1476 206 4 18 chr12 70789209 70789481 -72996974 + AluJo SINE Alu 1 268 -44 225 160 60 0 chr12 70789490 70789540 -72996915 + L1MA8 LINE L1 6062 6114 -177 1498 106 20 8 chr12 70789546 70789791 -72996664 + L1MA1 LINE L1 6055 6302 0 763 149 51 26 chr12 70789791 70789981 -72996474 + L1MA8 LINE L1 6091 6290 -1 2229 114 0 0 chr12 70790009 70790307 -72996148 - AluSx SINE Alu -10 302 5 24 32 0 0 chr12 70790633 70790664 -72995791 + AT_rich Low_complexity Low_complexity 1 31 0 365 328 83 10 chr12 70791408 70791600 -72994855 - MIR SINE MIR -50 212 7 300 337 88 28 chr12 70792073 70792254 -72994201 + L2 LINE L2 3080 3271 -1 1094 168 43 5 chr12 70792950 70793158 -72993297 - MER20 DNA MER1_type 0 219 4 333 290 109 44 chr12 70793946 70794129 -72992326 + MIR SINE MIR 1 195 -67 713 242 155 0 chr12 70794417 70794611 -72991844 + MIR SINE MIR 32 255 -7 550 302 85 63 chr12 70795046 70795553 -72990902 + LTR67 LTR ERVL 28 545 -12 1574 212 112 107 chr12 70795818 70796407 -72990048 - MLT1G LTR MaLR -3 587 1 2363 113 29 16 chr12 70797462 70797844 -72988611 - MSTA LTR MaLR 0 428 42 297 297 126 45 chr12 70798020 70798131 -72988324 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 70799205 70799247 -72987208 + AT_rich Low_complexity Low_complexity 1 42 0 489 279 111 11 chr12 70799349 70799539 -72986916 - MIR SINE MIR -43 219 11 180 240 147 27 chr12 70799629 70799704 -72986751 + MIR3 SINE MIR 75 158 -50 1452 261 63 52 chr12 70799716 70800449 -72986006 + MER20B DNA MER1_type 11 751 -32 25 51 0 0 chr12 70800822 70800861 -72985594 + AT_rich Low_complexity Low_complexity 1 39 0 250 356 52 69 chr12 70801134 70801581 -72984874 - L2 LINE L2 -8 3264 2826 838 277 78 24 chr12 70801629 70801925 -72984530 - L2 LINE L2 -3 3310 2999 458 304 40 52 chr12 70802322 70802572 -72983883 - MIR SINE MIR -3 259 13 202 193 53 35 chr12 70803095 70803152 -72983303 - MIR SINE MIR -140 122 65 26 0 0 0 chr12 70803581 70803607 -72982848 + AT_rich Low_complexity Low_complexity 1 26 0 485 239 204 18 chr12 70805424 70805625 -72980830 + MIR SINE MIR 1 237 -25 183 355 13 0 chr12 70805804 70805880 -72980575 - MIR SINE MIR -70 192 116 285 374 81 0 chr12 70806316 70806439 -72980016 + L2 LINE L2 3140 3272 0 450 268 32 0 chr12 70806668 70806791 -72979664 - MER94 DNA DNA 0 134 8 697 273 112 0 chr12 70806806 70806993 -72979462 + MIR SINE MIR 54 261 -1 2049 121 7 10 chr12 70809003 70809301 -72977154 + AluSx SINE Alu 5 301 -11 228 242 114 16 chr12 70809886 70810030 -72976425 - MIR SINE MIR -55 153 1 24 32 0 0 chr12 70810330 70810361 -72976094 + AT_rich Low_complexity Low_complexity 1 31 0 590 215 40 13 chr12 70810370 70810519 -72975936 + MIR SINE MIR 109 261 -1 325 257 11 164 chr12 70810927 70811060 -72975395 - MER5B DNA MER1_type 0 189 37 1730 172 7 18 chr12 70811060 70811379 -72975076 - AluJb SINE Alu 0 316 1 2051 134 0 10 chr12 70811389 70811681 -72974774 - AluSx SINE Alu -23 289 1 325 257 11 164 chr12 70811681 70811743 -72974712 - MER5B DNA MER1_type -162 27 3 183 43 43 65 chr12 70811858 70811904 -72974551 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 206 351 52 0 chr12 70812027 70812104 -72974351 - MIR SINE MIR -133 129 49 2222 101 0 7 chr12 70812196 70812494 -72973961 + AluSq SINE Alu 1 296 -17 308 278 203 28 chr12 70812828 70812940 -72973515 - MIR SINE MIR 0 262 171 1836 166 19 7 chr12 70812940 70813248 -72973207 - AluJb SINE Alu 0 312 1 308 278 203 28 chr12 70813248 70813347 -72973108 - MIR SINE MIR -91 171 14 184 303 64 46 chr12 70814412 70814521 -72971934 - L2 LINE L2 -2780 534 424 579 196 23 23 chr12 70815259 70815392 -72971063 + L2 LINE L2 2565 2697 -617 2106 217 45 88 chr12 70815392 70815703 -72970752 - L1MD2 LINE L1 -1 6358 6035 1474 197 13 26 chr12 70815703 70816012 -72970443 + AluJo SINE Alu 5 309 -3 2106 217 45 88 chr12 70816012 70816267 -72970188 - L1MD2 LINE L1 -324 6035 5837 1713 159 41 3 chr12 70816267 70816557 -72969898 - AluJb SINE Alu -11 301 1 2106 217 45 88 chr12 70816557 70816817 -72969638 - L1MD2 LINE L1 -522 5837 5567 1012 255 15 12 chr12 70816817 70817137 -72969318 + L2 LINE L2 2695 3015 -298 314 369 7 7 chr12 70817204 70817345 -72969110 - L1MCb LINE L1 -5673 372 232 2646 99 8 3 chr12 70818170 70818532 -72967923 + THE1B LTR MaLR 1 364 0 756 339 0 16 chr12 70819989 70820243 -72966212 + MIR SINE MIR 2 251 -11 2557 172 91 54 chr12 70820921 70821646 -72964809 - L1MC3 LINE L1 0 7785 7034 353 161 0 0 chr12 70821647 70821709 -72964746 - L1MC3 LINE L1 -2248 5794 5733 262 234 32 0 chr12 70821713 70821807 -72964648 - L1M4 LINE L1 -3106 3040 2944 1146 120 130 9 chr12 70821810 70822026 -72964429 - L1MA6 LINE L1 0 6300 6059 30 27 0 0 chr12 70822143 70822180 -72964275 + AT_rich Low_complexity Low_complexity 1 37 0 672 154 0 0 chr12 70822187 70822291 -72964164 - FLAM_A SINE Alu -19 123 20 1394 214 24 0 chr12 70822293 70822629 -72963826 - L1M4 LINE L1 -3212 2934 2591 1487 206 0 32 chr12 70822730 70823012 -72963443 - AluJo SINE Alu -39 273 1 279 0 0 0 chr12 70824113 70824144 -72962311 + (A)n Simple_repeat Simple_repeat 1 31 0 261 0 0 0 chr12 70824736 70824765 -72961690 + (A)n Simple_repeat Simple_repeat 1 29 0 1424 177 97 13 chr12 70825154 70825526 -72960929 + MLT1C LTR MaLR 65 467 0 636 274 110 41 chr12 70825775 70825841 -72960614 - MIR SINE MIR 0 262 202 2310 103 0 0 chr12 70825841 70826132 -72960323 + AluSc SINE Alu 1 291 -18 636 274 110 41 chr12 70826132 70826310 -72960145 - MIR SINE MIR -60 202 1 219 322 161 17 chr12 70827596 70827714 -72958741 - MIR3 SINE MIR -51 157 23 1412 298 46 25 chr12 70827823 70828390 -72958065 + MLT1E LTR MaLR 1 579 -14 969 162 173 10 chr12 70829828 70830025 -72956430 - MIR SINE MIR -11 251 23 1632 238 155 19 chr12 70830190 70830712 -72955743 - MLT1G1 LTR MaLR -2 593 1 22 0 0 0 chr12 70830759 70830781 -72955674 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 70830821 70830846 -72955609 + AT_rich Low_complexity Low_complexity 1 25 0 188 259 19 0 chr12 70831343 70831397 -72955058 + L2 LINE L2 2920 2974 -298 5876 22 0 0 chr12 70831525 70832196 -72954259 + L1PA3 LINE L1 5482 6152 -3 22 0 0 0 chr12 70832196 70832218 -72954237 + AT_rich Low_complexity Low_complexity 1 22 0 275 0 29 0 chr12 70832218 70832253 -72954202 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 574 271 7 14 chr12 70832544 70832684 -72953771 + L2 LINE L2 3175 3313 0 267 313 62 10 chr12 70833307 70833403 -72953052 + MIR SINE MIR 48 148 -60 22 0 0 0 chr12 70833640 70833662 -72952793 + AT_rich Low_complexity Low_complexity 1 22 0 1963 151 10 3 chr12 70833730 70834034 -72952421 - AluJb SINE Alu -6 306 1 324 250 71 9 chr12 70835863 70835975 -72950480 - MIR SINE MIR -10 252 134 2055 103 62 0 chr12 70836070 70836360 -72950095 + AluSp SINE Alu 1 308 -5 2123 63 4 4 chr12 70836371 70836639 -72949816 + AluY SINE Alu 23 290 -21 24 0 0 0 chr12 70837731 70837755 -72948700 + AT_rich Low_complexity Low_complexity 1 24 0 4373 229 38 22 chr12 70837904 70838188 -72948267 + L1MB8 LINE L1 2621 2899 -3247 1665 194 0 3 chr12 70838188 70838482 -72947973 + AluJb SINE Alu 1 293 -19 4373 229 38 22 chr12 70838482 70838866 -72947589 + L1MB8 LINE L1 2899 3275 -2871 2199 120 7 0 chr12 70838866 70839166 -72947289 + AluSx SINE Alu 1 302 -10 4373 229 38 22 chr12 70839166 70839905 -72946550 + L1MB8 LINE L1 3275 4052 -2094 3851 197 52 19 chr12 70839903 70841693 -72944762 + L1MB8 LINE L1 4333 6177 -1 * 601 231 0 30 chr12 70842655 70842789 -72943666 + FLAM_A SINE Alu 1 130 -3 336 268 18 53 chr12 70843106 70843226 -72943229 - MIR SINE MIR -78 130 14 337 336 33 62 chr12 70843375 70843440 -72943015 + HAL1b LINE L1 405 470 -878 849 214 45 5 chr12 70843440 70843641 -72942814 - MER3 DNA MER1_type 0 209 1 337 336 33 62 chr12 70843641 70843786 -72942669 + HAL1b LINE L1 470 609 -739 581 325 147 20 chr12 70843804 70844260 -72942195 + L2 LINE L2 1189 1702 -1612 260 248 57 57 chr12 70844318 70844459 -72941996 + L2 LINE L2 2999 3139 -174 303 284 64 9 chr12 70844581 70844690 -72941765 - MIR SINE MIR -66 196 82 320 260 26 0 chr12 70844747 70844824 -72941631 - MIR SINE MIR -182 80 2 432 38 0 0 chr12 70845296 70845349 -72941106 + AluY SINE Alu 244 296 -15 2262 109 3 0 chr12 70846004 70846308 -72940147 - AluSp SINE Alu -8 305 1 290 382 35 28 chr12 70846822 70846966 -72939489 + MIR3 SINE MIR 36 180 -28 243 328 0 0 chr12 70847321 70847382 -72939073 - L2 LINE L2 -2 3311 3251 366 300 18 36 chr12 70847646 70847756 -72938699 - L2 LINE L2 -9 3304 3197 252 301 52 61 chr12 70848047 70848276 -72938179 + MLT1L LTR MaLR 17 243 -372 248 189 67 33 chr12 70848454 70848544 -72937911 + MLT1L LTR MaLR 512 604 -11 467 250 16 31 chr12 70849314 70849442 -72937013 - MIR3 SINE MIR -49 159 34 528 299 96 45 chr12 70849517 70849871 -72936584 + L2 LINE L2 2871 3242 -71 4168 21 2 0 chr12 70850470 70850955 -72935500 - L1PA3 LINE L1 0 6155 5670 21 36 0 0 chr12 70852210 70852238 -72934217 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 70852957 70852981 -72933474 + AT_rich Low_complexity Low_complexity 1 24 0 2183 128 0 0 chr12 70853024 70853330 -72933125 - AluSg SINE Alu -4 306 1 547 217 13 59 chr12 70853900 70854052 -72932403 - L2 LINE L2 0 3313 3169 516 330 80 8 chr12 70854489 70854728 -72931727 + L2 LINE L2 2806 3061 -211 309 244 12 24 chr12 70855602 70855684 -72930771 + MER21B LTR ERV1 13 93 -770 989 228 54 134 chr12 70855747 70855937 -72930518 + MER21B LTR ERV1 101 305 -558 2978 107 14 2 chr12 70855937 70856366 -72930089 - MER57B LTR ERV1 0 434 1 989 228 54 134 chr12 70856366 70856514 -72929941 + MER21B LTR ERV1 305 463 -400 2044 128 0 20 chr12 70856514 70856811 -72929644 + AluJo SINE Alu 14 304 -8 989 228 54 134 chr12 70856811 70857141 -72929314 + MER21B LTR ERV1 463 716 -147 341 342 75 6 chr12 70857193 70857354 -72929101 + MIR3 SINE MIR 14 185 -23 1182 293 32 13 chr12 70857468 70857843 -72928612 + L2 LINE L2 2932 3313 0 1012 220 29 19 chr12 70858279 70858459 -72927996 + MER33 DNA MER1_type 7 194 -2391 2109 115 4 0 chr12 70858459 70858764 -72927691 + AluSc SINE Alu 1 306 0 1012 220 29 19 chr12 70858764 70858896 -72927559 + MER33 DNA MER1_type 194 323 -1 246 290 0 29 chr12 70858970 70859039 -72927416 - L2 LINE L2 -2891 423 357 2225 110 7 3 chr12 70859040 70859341 -72927114 + AluSc SINE Alu 1 302 -7 876 158 38 13 chr12 70859563 70859721 -72926734 + FRAM SINE Alu 1 157 -19 211 223 231 54 chr12 70859721 70859851 -72926604 - L2 LINE L2 -3 3310 3158 266 372 0 0 chr12 70860591 70860685 -72925770 + MIR SINE MIR 58 151 -111 27 29 0 0 chr12 70861276 70861310 -72925145 + AT_rich Low_complexity Low_complexity 1 34 0 315 235 62 0 chr12 70861561 70861642 -72924813 - MIR SINE MIR -86 122 37 347 346 173 4 chr12 70861660 70861897 -72924558 - L3 LINE CR1 -17 1560 1284 200 267 35 138 chr12 70862255 70862371 -72924084 - L2 LINE L2 0 3313 3210 536 278 75 0 chr12 70862397 70862570 -72923885 - MIR SINE MIR -8 254 69 1660 175 33 36 chr12 70863075 70863435 -72923020 + MLT1A1 LTR MaLR 5 363 -2 288 238 158 0 chr12 70864540 70864641 -72921814 + MIR3 SINE MIR 91 207 -1 2143 139 0 0 chr12 70865100 70865410 -72921045 - AluSx SINE Alu -2 310 1 846 124 0 0 chr12 70865489 70865618 -72920837 - L1PA15 LINE L1 -13 6152 6024 2010 168 76 25 chr12 70865668 70866074 -72920381 - MSTA LTR MaLR 0 428 2 503 232 213 0 chr12 70866868 70867023 -72919432 - MER5A DNA MER1_type -1 188 1 285 203 0 0 chr12 70867027 70867086 -72919369 + AluSq SINE Alu 1 59 -242 1705 119 4 27 chr12 70867114 70867375 -72919080 + AluSq SINE Alu 42 296 -17 21 57 0 0 chr12 70868490 70868525 -72917930 + AT_rich Low_complexity Low_complexity 1 35 0 205 298 53 127 chr12 70868857 70869085 -72917370 - L2 LINE L2 -97 3175 2965 2420 70 0 29 chr12 70870078 70870393 -72916062 - AluY SINE Alu -5 306 1 198 192 0 0 chr12 70870875 70870927 -72915528 + (AATAG)n Simple_repeat Simple_repeat 4 55 0 246 81 0 0 chr12 70870979 70871016 -72915439 + (TG)n Simple_repeat Simple_repeat 2 38 0 661 308 115 76 chr12 70871305 70872691 -72913764 - L2 LINE L2 0 3313 1883 188 219 0 0 chr12 70873483 70873524 -72912931 - L2 LINE L2 -4 3309 3269 396 253 39 45 chr12 70873658 70873812 -72912643 - MIR SINE MIR -2 260 108 737 251 22 130 chr12 70874980 70875350 -72911105 - L2 LINE L2 -12 3301 2972 184 272 132 18 chr12 70875385 70875499 -72910956 - MIR SINE MIR -19 243 117 * 634 259 11 1 chr12 70875496 70875650 -72910805 - MER5A DNA MER1_type -17 166 1 2304 100 3 3 chr12 70875814 70876124 -72910331 - AluSx SINE Alu -2 310 1 254 324 14 0 chr12 70876163 70876234 -72910221 + L2 LINE L2 3193 3264 -49 1852 216 99 8 chr12 70876269 70876792 -72909663 - L1MD3 LINE L1 -1 7994 7424 372 236 73 16 chr12 70876795 70876918 -72909537 - MLT1F1 LTR MaLR -437 130 1 410 153 0 0 chr12 70876919 70876991 -72909464 - L1MD3 LINE L1 -719 7276 7205 * 1124 232 72 35 chr12 70876988 70877333 -72909122 - L1MD3 LINE L1 -1152 6843 6486 1432 137 22 89 chr12 70877335 70877648 -72908807 + MLT1B LTR MaLR 7 298 -92 2515 160 119 136 chr12 70877655 70877735 -72908720 - L1MC3 LINE L1 -136 7649 7569 180 0 0 0 chr12 70877735 70877755 -72908700 + (TA)n Simple_repeat Simple_repeat 2 21 0 2515 160 119 136 chr12 70877755 70878136 -72908319 - L1MC3 LINE L1 -216 7569 7183 277 275 11 11 chr12 70878136 70878227 -72908228 - MLT1F1 LTR MaLR -442 125 35 2515 160 119 136 chr12 70878227 70878477 -72907978 - L1MC3 LINE L1 -602 7183 6863 1529 184 33 0 chr12 70878477 70878748 -72907707 - AluJo SINE Alu -31 281 2 2515 160 119 136 chr12 70878748 70878909 -72907546 - L1MC3 LINE L1 -922 6863 6701 669 281 161 3 chr12 70878902 70879255 -72907200 - L1ME4a LINE L1 -227 5894 5486 * 392 307 73 18 chr12 70879338 70879569 -72906886 - L1ME4a LINE L1 -749 5397 5159 29 0 0 0 chr12 70880048 70880077 -72906378 + AT_rich Low_complexity Low_complexity 1 29 0 328 308 238 39 chr12 70880373 70880944 -72905511 - L2 LINE L2 -466 2848 2164 883 168 99 11 chr12 70880961 70881152 -72905303 + MER20 DNA MER1_type 11 218 -1 294 234 37 75 chr12 70882036 70882143 -72904312 + L2 LINE L2 3171 3273 -40 1752 164 13 20 chr12 70883346 70883651 -72902804 + AluJb SINE Alu 1 303 -9 475 260 107 41 chr12 70883668 70883864 -72902591 - MIR SINE MIR -2 260 52 529 311 166 27 chr12 70883995 70884519 -72901936 + L2 LINE L2 2140 2736 -578 478 228 48 74 chr12 70884510 70884699 -72901756 - L2 LINE L2 0 3313 3130 * 1880 140 24 84 chr12 70885029 70885444 -72901011 - MLT1B LTR MaLR 0 390 1 249 318 0 9 chr12 70885454 70885564 -72900891 - L1MC5 LINE L1 -125 7836 7728 656 220 28 0 chr12 70885940 70886105 -72900350 - L1MCb LINE L1 -3762 2821 2642 4267 206 62 38 chr12 70886126 70887154 -72899301 - L1MCb LINE L1 -4046 2518 1517 1556 142 30 61 chr12 70887154 70887450 -72899005 - AluJo SINE Alu -25 287 1 4267 206 62 38 chr12 70887450 70887823 -72898632 - L1MCb LINE L1 -5047 1517 1155 1751 179 3 14 chr12 70887823 70888114 -72898341 - AluJb SINE Alu -24 288 1 4267 206 62 38 chr12 70888114 70889068 -72897387 - L1MCb LINE L1 -5409 1155 4 601 305 67 71 chr12 70889213 70889692 -72896763 - L2 LINE L2 0 3313 2837 282 337 134 23 chr12 70889776 70889948 -72896507 + MIR3 SINE MIR 11 201 -7 549 284 22 49 chr12 70889950 70890133 -72896322 - L3 LINE CR1 -68 1509 1332 648 210 210 0 chr12 70890157 70890324 -72896131 + MER3 DNA MER1_type 1 202 -7 237 245 0 0 chr12 70890288 70890341 -72896114 - MER3 DNA MER1_type -119 90 38 * 290 235 53 68 chr12 70890355 70890487 -72895968 - L3 LINE CR1 -291 1286 1157 225 178 0 0 chr12 70891085 70891130 -72895325 + T-rich Low_complexity Low_complexity 1 45 0 234 380 11 0 chr12 70891317 70891409 -72895046 - L3b LINE CR1 -86 1497 1405 2227 96 3 16 chr12 70891643 70891957 -72894498 - AluSx SINE Alu -2 310 1 521 206 58 112 chr12 70891958 70892181 -72894274 + L2 LINE L2 3012 3222 -91 21 36 0 0 chr12 70892338 70892366 -72894089 + AT_rich Low_complexity Low_complexity 1 28 0 285 250 0 0 chr12 70892388 70892448 -72894007 + MIR SINE MIR 203 262 0 2419 246 74 10 chr12 70892504 70893400 -72893055 + MER69 DNA AcHobo 1 2329 -197 390 282 10 0 chr12 70893424 70893527 -72892928 - L2 LINE L2 -659 2655 2552 182 207 17 69 chr12 70893586 70893644 -72892811 + MIR SINE MIR 2 56 -206 730 197 48 32 chr12 70893655 70893843 -72892612 + MER69 DNA AcHobo 2336 2526 0 398 331 122 4 chr12 70893843 70894139 -72892316 - L1MC/D LINE L1 -660 5502 5284 784 280 92 22 chr12 70894739 70895010 -72891445 - L3b LINE CR1 -180 1403 1114 1718 191 3 7 chr12 70895828 70896122 -72890333 - AluJo SINE Alu -19 293 1 314 241 56 37 chr12 70896622 70896730 -72889725 - MLT1J LTR MaLR -1 510 401 974 170 76 37 chr12 70896737 70897001 -72889454 + MLT1A1 LTR MaLR 11 365 0 303 211 150 45 chr12 70897219 70897352 -72889103 - MLT1J LTR MaLR -358 153 7 255 279 180 9 chr12 70898541 70898652 -72887803 + MIR SINE MIR 125 254 -8 287 269 64 13 chr12 70900699 70900777 -72885678 + Tigger8 DNA MER2_type 81 162 -504 289 314 8 0 chr12 70900878 70900999 -72885456 + Tigger8 DNA MER2_type 418 539 -127 2279 100 0 3 chr12 70901068 70901368 -72885087 + AluSc SINE Alu 1 299 -10 24 0 0 0 chr12 70902528 70902552 -72883903 + AT_rich Low_complexity Low_complexity 1 24 0 1659 139 13 74 chr12 70902592 70902902 -72883553 + AluJo SINE Alu 6 296 -16 1566 181 34 9 chr12 70903286 70903612 -72882843 - L1MD3 LINE L1 -10 7985 7652 342 386 47 45 chr12 70903805 70904206 -72882249 - L2 LINE L2 -55 3217 2816 300 340 66 42 chr12 70904770 70905029 -72881426 - L2 LINE L2 -1238 2076 1812 485 284 37 0 chr12 70907438 70907547 -72878908 - L2 LINE L2 -1 3271 3159 409 354 94 14 chr12 70907641 70907929 -72878526 - L3 LINE CR1 -57 1520 1210 23 0 0 0 chr12 70908453 70908476 -72877979 + AT_rich Low_complexity Low_complexity 1 23 0 278 296 71 0 chr12 70909655 70909753 -72876702 + MER103 DNA DNA 55 159 -7 270 275 14 0 chr12 70910458 70910527 -72875928 - MIR SINE MIR -68 194 125 660 190 0 9 chr12 70911299 70911415 -72875040 + FLAM_A SINE Alu 1 115 -18 187 288 85 0 chr12 70912251 70912310 -72874145 - L2 LINE L2 -41 3231 3168 21 57 0 0 chr12 70913020 70913055 -72873400 + AT_rich Low_complexity Low_complexity 1 35 0 1324 231 14 108 chr12 70914362 70914404 -72872051 - MLT2B1 LTR ERVL -8 512 468 252 0 0 0 chr12 70914404 70914432 -72872023 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr12 70914433 70914453 -72872002 + (GA)n Simple_repeat Simple_repeat 1 20 0 1324 231 14 108 chr12 70914453 70914972 -72871483 - MLT2B1 LTR ERVL -51 469 2 260 325 179 16 chr12 70916730 70916982 -72869473 + L2 LINE L2 970 1262 -2052 422 242 60 71 chr12 70919052 70919234 -72867221 + MLT1J LTR MaLR 159 338 -173 232 195 0 0 chr12 70919278 70919319 -72867136 + L2 LINE L2 3266 3306 -7 408 279 82 20 chr12 70919411 70919558 -72866897 + MLT1J LTR MaLR 356 511 0 831 207 12 6 chr12 70919601 70919765 -72866690 + AluJb SINE Alu 134 298 -14 252 267 26 78 chr12 70920284 70920400 -72866055 + L2 LINE L2 3173 3282 -31 748 159 0 97 chr12 70920998 70921205 -72865250 + MER53 DNA DNA 1 187 -2 516 253 92 94 chr12 70921655 70921983 -72864472 + MER102a DNA MER1_type 1 327 -3 202 177 16 16 chr12 70922925 70922987 -72863468 + T-rich Low_complexity Low_complexity 2 63 0 2065 125 0 3 chr12 70923602 70923938 -72862517 + AluSx SINE Alu 1 335 0 1200 196 249 20 chr12 70924005 70924402 -72862053 - MLT1D LTR MaLR 0 505 18 489 291 121 0 chr12 70925600 70925799 -72860656 - MIR SINE MIR 0 262 40 491 299 64 16 chr12 70925842 70926029 -72860426 - MIR SINE MIR -15 247 52 1649 149 9 78 chr12 70926475 70926797 -72859658 + AluJb SINE Alu 1 300 -12 643 274 97 4 chr12 70928719 70928945 -72857510 + MIR SINE MIR 2 248 -14 1380 321 99 19 chr12 70930187 70930854 -72855601 + L3 LINE CR1 520 1239 -338 1334 276 74 14 chr12 70930955 70931535 -72854920 + L2 LINE L2 1955 2569 -745 754 315 54 61 chr12 70931556 70931987 -72854468 + L2 LINE L2 2729 3148 -124 1013 183 132 0 chr12 70931987 70932184 -72854271 - MER58A DNA MER1_type -1 223 1 754 315 54 61 chr12 70932184 70932308 -72854147 + L2 LINE L2 3148 3271 -1 513 335 45 6 chr12 70932511 70932687 -72853768 + L3 LINE CR1 1384 1566 -11 276 352 19 0 chr12 70932752 70932860 -72853595 - MIR SINE MIR -50 212 103 232 323 0 10 chr12 70934304 70934400 -72852055 + MLT1K LTR MaLR 458 552 -36 459 292 0 0 chr12 70934420 70934533 -72851922 - MER94 DNA DNA -18 116 4 364 301 18 18 chr12 70934810 70934973 -72851482 - MER103 DNA DNA -1 165 3 183 162 0 0 chr12 70935168 70935205 -72851250 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 255 268 121 55 chr12 70936620 70936788 -72849667 - MIR SINE MIR -56 206 30 189 314 0 59 chr12 70936966 70937068 -72849387 - MIR SINE MIR -46 216 121 234 245 160 43 chr12 70937220 70937314 -72849141 - L2 LINE L2 -23 3290 3186 366 250 112 0 chr12 70937440 70937556 -72848899 - MER94 DNA DNA -4 130 2 556 279 94 42 chr12 70937760 70938208 -72848247 + MLT1H LTR MaLR 75 545 -4 263 258 11 11 chr12 70938262 70938355 -72848100 - L1MCc LINE L1 -5510 913 821 833 296 23 16 chr12 70938403 70938788 -72847667 - L1MCc LINE L1 -5942 481 94 243 125 0 0 chr12 70939994 70940034 -72846421 + (CA)n Simple_repeat Simple_repeat 2 41 0 1599 154 27 15 chr12 70940618 70940877 -72845578 - AluJo SINE Alu -30 282 21 23 54 0 0 chr12 70940913 70940950 -72845505 + AT_rich Low_complexity Low_complexity 1 37 0 1569 190 11 4 chr12 70941010 70941289 -72845166 + AluJo SINE Alu 1 281 -31 1588 159 12 4 chr12 70941618 70941869 -72844586 + AluJo SINE Alu 54 306 -6 327 104 39 52 chr12 70941869 70941946 -72844509 - L1MA10 LINE L1 -60 6274 6199 * 2525 231 50 37 chr12 70941944 70942255 -72844200 - L1ME1 LINE L1 -107 6059 5753 4187 130 16 59 chr12 70942255 70943056 -72843399 - L1MA5 LINE L1 0 6300 5534 2525 231 50 37 chr12 70943056 70943449 -72843006 - L1ME1 LINE L1 -413 5753 5366 1240 171 14 0 chr12 70943449 70943666 -72842789 - L1PA16 LINE L1 0 6166 5947 2525 231 50 37 chr12 70943666 70944445 -72842010 - L1ME1 LINE L1 -800 5366 4570 232 156 0 31 chr12 70944634 70944698 -72841757 + T-rich Low_complexity Low_complexity 4 65 0 2218 104 0 16 chr12 70945803 70946092 -72840363 + AluSx SINE Alu 1 286 -26 222 37 0 0 chr12 70946092 70946119 -72840336 + (CA)n Simple_repeat Simple_repeat 2 28 0 2218 104 0 16 chr12 70946119 70946137 -72840318 + AluSx SINE Alu 286 303 -9 36 70 0 0 chr12 70946537 70946608 -72839847 + AT_rich Low_complexity Low_complexity 1 71 0 503 197 43 26 chr12 70947183 70947300 -72839155 + MIR SINE MIR 138 256 -6 996 169 0 0 chr12 70947667 70947827 -72838628 - AluJb SINE Alu -11 301 142 530 302 7 29 chr12 70948171 70948310 -72838145 - L2 LINE L2 0 3272 3137 275 328 69 29 chr12 70948570 70948744 -72837711 - L2 LINE L2 -530 2784 2604 1392 167 7 89 chr12 70949774 70949871 -72836584 + AluJo SINE Alu 43 146 -166 1337 160 73 80 chr12 70949871 70950159 -72836296 - AluJb SINE Alu -26 286 1 1392 167 7 89 chr12 70950159 70950343 -72836112 + AluJo SINE Alu 146 301 -11 24 0 0 0 chr12 70950638 70950662 -72835793 + AT_rich Low_complexity Low_complexity 1 24 0 2245 59 0 46 chr12 70950663 70950993 -72835462 + AluY SINE Alu 1 311 0 188 389 113 12 chr12 70952019 70952507 -72833948 + L2 LINE L2 1991 2527 -787 302 412 48 18 chr12 70952667 70952939 -72833516 + L2 LINE L2 2899 3178 -94 1079 150 35 75 chr12 70953274 70953500 -72832955 - MER20 DNA MER1_type 0 219 3 1113 173 62 17 chr12 70953545 70953834 -72832621 - MER33 DNA MER1_type -22 302 1 210 71 0 0 chr12 70954009 70954037 -72832418 + (TA)n Simple_repeat Simple_repeat 1 28 0 319 329 40 33 chr12 70954295 70954447 -72832008 - MIR3 SINE MIR -45 163 11 369 256 45 70 chr12 70954451 70954607 -72831848 + MIR SINE MIR 77 228 -34 216 303 103 54 chr12 70954662 70954847 -72831608 - L3b LINE CR1 -24 1559 1366 2242 166 132 42 chr12 70955069 70955616 -72830839 - MER7C DNA MER2_type -6 596 1 207 307 0 102 chr12 70955737 70955825 -72830630 - L3b LINE CR1 -289 1294 1216 343 260 126 71 chr12 70956487 70956741 -72829714 + L2 LINE L2 3046 3313 0 2132 105 10 10 chr12 70957080 70957374 -72829081 - AluSx SINE Alu -18 294 1 2163 86 11 0 chr12 70957793 70958110 -72828345 + AluY SINE Alu 1 320 0 21 0 0 0 chr12 70958245 70958266 -72828189 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr12 70959768 70959796 -72826659 + (CA)n Simple_repeat Simple_repeat 2 29 0 494 305 72 21 chr12 70961313 70961526 -72824929 + MIR SINE MIR 31 257 -5 1306 192 47 56 chr12 70961527 70961887 -72824568 + MLT2D LTR ERVL 1 357 -57 204 40 0 0 chr12 70961887 70961912 -72824543 + (TC)n Simple_repeat Simple_repeat 2 26 0 260 241 13 0 chr12 70961912 70961991 -72824464 + (TA)n Simple_repeat Simple_repeat 2 81 0 248 273 23 0 chr12 70961993 70962081 -72824374 - L1MC4 LINE L1 -1339 6703 6614 * 282 270 0 0 chr12 70962006 70962095 -72824360 + L1MC4 LINE L1 6615 6703 -1339 1298 203 74 59 chr12 70962643 70963033 -72823422 + MSTD LTR MaLR 1 396 0 795 296 42 8 chr12 70965590 70965830 -72820625 - MIR SINE MIR -3 259 12 25 0 0 0 chr12 70967347 70967372 -72819083 + AT_rich Low_complexity Low_complexity 1 25 0 508 243 211 12 chr12 70968022 70968273 -72818182 - L1ME4a LINE L1 -4 6117 5817 480 222 20 0 chr12 70968274 70968373 -72818082 + L2 LINE L2 3211 3311 -2 420 311 16 11 chr12 70968422 70968612 -72817843 - L1ME4a LINE L1 -370 5751 5561 226 289 77 32 chr12 70969025 70969181 -72817274 - L1ME4a LINE L1 -25 6096 5934 771 228 6 36 chr12 70969208 70969348 -72817107 - AluJ SINE Alu -18 294 158 2084 142 36 25 chr12 70969348 70969708 -72816747 + THE1B LTR MaLR 1 364 0 771 228 6 36 chr12 70969708 70969734 -72816721 - AluJ SINE Alu -154 158 133 776 177 8 0 chr12 70969734 70969864 -72816591 - AluJ SINE Alu -169 133 3 296 227 52 0 chr12 70969879 70969976 -72816479 - L1ME4a LINE L1 -190 5931 5830 376 340 71 46 chr12 70969996 70970089 -72816366 + MIR SINE MIR 3 92 -170 3010 74 0 0 chr12 70970089 70970483 -72815972 + L1PA8 LINE L1 5779 6172 0 376 340 71 46 chr12 70970483 70970627 -72815828 + MIR SINE MIR 92 246 -16 217 167 24 0 chr12 70970801 70970843 -72815612 - L2 LINE L2 0 3272 3230 288 281 73 52 chr12 70971154 70971250 -72815205 + L2 LINE L2 3208 3305 -8 2234 87 3 3 chr12 70973219 70973505 -72812950 + AluY SINE Alu 1 286 -25 333 47 0 0 chr12 70973508 70973551 -72812904 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 289 373 87 0 chr12 70973552 70973678 -72812777 - MIR SINE MIR -77 185 49 216 185 0 93 chr12 70973899 70973953 -72812502 - L2 LINE L2 -2 3311 3263 2108 110 29 23 chr12 70974299 70974608 -72811847 + AluSx SINE Alu 1 311 -1 669 265 5 47 chr12 70975008 70975223 -72811232 - L2 LINE L2 -1 3312 3107 1989 152 7 0 chr12 70975223 70975519 -72810936 + AluSx SINE Alu 1 298 -14 2070 274 116 11 chr12 70975523 70976238 -72810217 - L2 LINE L2 -1178 2136 1347 599 177 85 0 chr12 70976256 70976386 -72810069 - Charlie1 DNA MER1_type 0 2761 2621 * 725 231 177 0 chr12 70976371 70976574 -72809881 - Charlie1 DNA MER1_type -2522 239 1 397 318 23 0 chr12 70976574 70976706 -72809749 - L2 LINE L2 -2505 809 675 541 248 16 0 chr12 70976710 70976835 -72809620 - L2 LINE L2 -2933 381 255 2046 241 54 7 chr12 70976870 70977425 -72809030 - MLT1G LTR MaLR 0 590 10 2059 117 0 17 chr12 70977534 70977857 -72808598 - AluSx SINE Alu 0 318 1 835 217 53 124 chr12 70977857 70978253 -72808202 + MLT1A2 LTR MaLR 7 374 0 195 42 0 0 chr12 70978370 70978394 -72808061 + (CAA)n Simple_repeat Simple_repeat 1 24 0 578 205 16 0 chr12 70980537 70980659 -72805796 + MER5C DNA MER1_type 1 124 -200 2259 108 0 10 chr12 70981280 70981587 -72804868 + AluSq SINE Alu 1 304 -9 213 265 68 88 chr12 70982083 70982230 -72804225 - MIR SINE MIR -89 173 30 301 325 77 29 chr12 70982777 70983023 -72803432 + L2 LINE L2 2605 2862 -452 428 315 104 22 chr12 70983746 70983968 -72802487 - MIR SINE MIR -15 247 8 21 0 0 0 chr12 70984210 70984231 -72802224 + AT_rich Low_complexity Low_complexity 1 21 0 440 292 26 21 chr12 70985128 70985301 -72801154 + MIR SINE MIR 69 241 -21 332 250 223 40 chr12 70985913 70986061 -72800394 + MLT1J LTR MaLR 1 175 -336 3969 140 95 38 chr12 70986400 70986608 -72799847 + Tigger3b DNA MER2_type 2 197 -2832 2120 111 0 23 chr12 70986608 70986915 -72799540 + AluSg SINE Alu 1 300 -10 3969 140 95 38 chr12 70986915 70987593 -72798862 + Tigger3b DNA MER2_type 197 942 -290 1835 229 73 9 chr12 70987611 70988158 -72798297 + LTR48B LTR ERV1 22 644 0 1821 142 10 26 chr12 70988158 70988459 -72797996 + Tigger3b DNA MER2_type 936 1231 -1 1513 199 184 89 chr12 70988502 70989099 -72797356 - MLT1E1 LTR MaLR 0 654 1 643 248 68 24 chr12 70989172 70989378 -72797077 - MIR SINE MIR -15 247 33 371 265 146 51 chr12 70989534 70989787 -72796668 - MLT1J LTR MaLR 0 511 235 353 252 19 58 chr12 70989965 70990037 -72796418 + L2 LINE L2 3171 3239 -33 1872 168 0 16 chr12 70990037 70990346 -72796109 - AluJb SINE Alu -8 304 1 353 252 19 58 chr12 70990346 70990376 -72796079 + L2 LINE L2 3239 3269 -3 221 301 0 27 chr12 70990380 70990453 -72796002 + MIR SINE MIR 189 259 -3 2442 108 39 30 chr12 70990637 70990998 -72795457 - THE1B LTR MaLR 0 364 1 183 284 0 0 chr12 70991293 70991381 -72795074 + CT-rich Low_complexity Low_complexity 3 90 0 2233 162 117 2 chr12 70991556 70991975 -72794480 - MLT1C LTR MaLR 0 467 1 360 338 22 22 chr12 70992148 70992287 -72794168 - MIR SINE MIR -98 164 26 454 251 23 47 chr12 70993197 70993368 -72793087 - L2 LINE L2 -5 3308 3142 2047 112 3 11 chr12 70993506 70993792 -72792663 - AluSx SINE Alu -28 284 1 264 307 0 0 chr12 70993796 70993871 -72792584 - L2 LINE L2 -238 3075 3001 3825 171 7 57 chr12 70994054 70995083 -72791372 - L1MA5 LINE L1 -2 6166 5172 * 5051 251 33 12 chr12 70995072 70995257 -72791198 - L1M2 LINE L1 -4497 2352 2172 207 0 0 0 chr12 70995257 70995280 -72791175 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5051 251 33 12 chr12 70995280 70995520 -72790935 - L1M2 LINE L1 -4677 2172 1938 222 37 0 0 chr12 70995520 70995547 -72790908 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5051 251 33 12 chr12 70995547 70996460 -72789995 - L1M2 LINE L1 -4911 1938 985 242 370 16 8 chr12 70996478 70996605 -72789850 - L1M2 LINE L1 -6034 815 688 991 288 40 7 chr12 70996820 70997119 -72789336 - L1M2 LINE L1 -6535 314 6 24 0 0 0 chr12 70997601 70997625 -72788830 + AT_rich Low_complexity Low_complexity 1 24 0 2223 133 0 0 chr12 70997740 70998041 -72788414 - AluSx SINE Alu -11 301 1 2277 104 0 13 chr12 70998910 70999217 -72787238 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr12 70999390 70999412 -72787043 + AT_rich Low_complexity Low_complexity 1 22 0 1908 139 30 23 chr12 71000640 71000749 -72785706 + AluJb SINE Alu 1 108 -204 2297 105 0 13 chr12 71000749 71001054 -72785401 - AluSq SINE Alu -12 301 1 1908 139 30 23 chr12 71001054 71001247 -72785208 + AluJb SINE Alu 108 305 -7 403 267 81 31 chr12 71001731 71001892 -72784563 + MIR SINE MIR 81 249 -13 414 0 0 0 chr12 71002067 71002113 -72784342 + (TG)n Simple_repeat Simple_repeat 2 47 0 347 299 89 6 chr12 71002617 71002774 -72783681 - MIR SINE MIR -65 197 28 265 318 65 0 chr12 71002806 71002913 -72783542 + L2 LINE L2 3200 3313 0 2248 114 10 0 chr12 71003914 71004222 -72782233 + AluSx SINE Alu 2 312 0 197 357 134 9 chr12 71004281 71004393 -72782062 - L2 LINE L2 -223 3049 2924 3654 195 84 19 chr12 71004418 71005385 -72781070 - MER69 DNA AcHobo -1 2525 1496 22 0 0 0 chr12 71005709 71005731 -72780724 + AT_rich Low_complexity Low_complexity 1 22 0 2617 30 7 0 chr12 71005732 71006028 -72780427 - L1PA2 LINE L1 -1 6154 5857 730 253 42 16 chr12 71006190 71006380 -72780075 - MER69 DNA AcHobo -2208 318 124 227 178 0 22 chr12 71006419 71006464 -72779991 + CT-rich Low_complexity Low_complexity 1 44 0 2618 195 167 8 chr12 71006897 71007616 -72778839 + L1MC4 LINE L1 6458 7290 -752 502 164 17 37 chr12 71007616 71007837 -72778618 + AluJo SINE Alu 76 312 0 1904 201 73 15 chr12 71007838 71008305 -72778150 + L1MC4 LINE L1 7283 7776 -266 347 287 77 35 chr12 71008310 71008453 -72778002 - MER69 DNA AcHobo -2377 149 1 2528 61 0 0 chr12 71008507 71008803 -72777652 + AluY SINE Alu 1 296 -15 295 347 96 21 chr12 71009978 71010217 -72776238 + MLT1J LTR MaLR 163 419 -92 1299 265 120 30 chr12 71010287 71010811 -72775644 + MLT1L LTR MaLR 39 609 -6 240 286 168 17 chr12 71011356 71011475 -72774980 - MER5A DNA MER1_type -50 139 3 1908 182 54 14 chr12 71011712 71012063 -72774392 - MLT1A1 LTR MaLR 0 365 1 410 325 108 10 chr12 71012279 71012482 -72773973 + L3 LINE CR1 1353 1575 -2 836 198 57 0 chr12 71012609 71012766 -72773689 + FRAM SINE Alu 1 165 -11 1899 142 6 38 chr12 71012795 71013112 -72773343 + AluJo SINE Alu 1 307 -5 2313 102 0 0 chr12 71013529 71013824 -72772631 - AluSx SINE Alu -17 295 1 941 160 0 51 chr12 71014373 71014548 -72771907 + AluJb SINE Alu 115 280 -32 22 70 0 0 chr12 71014718 71014761 -72771694 + AT_rich Low_complexity Low_complexity 1 43 0 264 30 0 0 chr12 71016091 71016124 -72770331 + (TA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 71018061 71018082 -72768373 + GC_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr12 71018203 71018253 -72768202 + GC_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 71018473 71018494 -72767961 + GC_rich Low_complexity Low_complexity 1 21 0 237 119 0 0 chr12 71018520 71018541 -72767914 + (CCGGG)n Simple_repeat Simple_repeat 1 63 0 237 119 0 0 chr12 71018541 71018583 -72767872 + (CCGGG)n Simple_repeat Simple_repeat 4 45 0 25 31 0 0 chr12 71018609 71018641 -72767814 + GC_rich Low_complexity Low_complexity 1 32 0 223 190 0 35 chr12 71018714 71018772 -72767683 + CT-rich Low_complexity Low_complexity 1 56 0 21 57 0 0 chr12 71018921 71018956 -72767499 + GC_rich Low_complexity Low_complexity 1 35 0 1566 168 54 54 chr12 71020720 71021018 -72765437 + AluJb SINE Alu 15 312 0 4491 73 2 0 chr12 71021462 71022010 -72764445 + L1PA7 LINE L1 5602 6150 -4 1266 241 35 101 chr12 71023310 71023854 -72762601 + MLT2B1 LTR ERVL 1 508 -12 503 263 147 0 chr12 71023866 71024022 -72762433 + MIR SINE MIR 47 225 -37 307 342 106 25 chr12 71024502 71024739 -72761716 + L2 LINE L2 2404 2659 -655 218 365 82 0 chr12 71025030 71025115 -72761340 - MIR SINE MIR -151 111 20 260 379 35 28 chr12 71025287 71025326 -72761129 + L2 LINE L2 3127 3164 -108 760 263 88 12 chr12 71025326 71025566 -72760889 + MIR SINE MIR 5 262 0 260 379 35 28 chr12 71025566 71025671 -72760784 + L2 LINE L2 3164 3272 0 1919 113 0 4 chr12 71026355 71026620 -72759835 + AluSc SINE Alu 44 307 -2 581 254 129 5 chr12 71026620 71026829 -72759626 + L1ME4a LINE L1 5660 5894 -227 296 244 12 12 chr12 71026833 71026919 -72759536 + HsTC2 DNA Tc2 1 86 -1812 1176 237 87 29 chr12 71026924 71027338 -72759117 + HsTC2 DNA Tc2 1282 1895 -3 893 148 0 22 chr12 71030354 71030489 -72755966 + AluJo SINE Alu 3 134 -178 1696 156 56 7 chr12 71031934 71032222 -72754233 - AluJb SINE Alu -10 302 1 2246 101 10 0 chr12 71032226 71032523 -72753932 - AluSg SINE Alu -10 300 1 498 248 121 20 chr12 71033616 71033765 -72752690 + MIR SINE MIR 1 164 -98 1973 148 0 7 chr12 71034014 71034312 -72752143 - AluJb SINE Alu -16 296 1 180 0 0 0 chr12 71035317 71035337 -72751118 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 71035835 71035858 -72750597 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 71035930 71035957 -72750498 + AT_rich Low_complexity Low_complexity 1 27 0 1663 165 34 28 chr12 71036056 71036347 -72750108 + AluJb SINE Alu 1 293 -19 954 189 0 0 chr12 71038164 71038323 -72748132 - FRAM SINE Alu -12 164 6 663 196 2 123 chr12 71038471 71038734 -72747721 + L1MC5 LINE L1 7012 7242 -733 301 354 8 8 chr12 71038743 71038870 -72747585 + L1MC4a LINE L1 7241 7367 -441 702 173 19 45 chr12 71038900 71039056 -72747399 + FAM SINE Alu 1 48 -1 1382 204 75 46 chr12 71039093 71039653 -72746802 + L1MC5 LINE L1 7342 7917 -44 341 348 45 13 chr12 71040747 71040902 -72745553 + MIR SINE MIR 28 187 -75 4916 91 14 10 chr12 71042119 71042834 -72743621 + L1MA2 LINE L1 5574 6291 -13 599 335 7 56 chr12 71043876 71044145 -72742310 + L2 LINE L2 3017 3272 0 197 327 58 39 chr12 71044423 71044527 -72741928 - MIR SINE MIR -69 139 34 1157 178 0 11 chr12 71044561 71044746 -72741709 - AluSg/x SINE Alu -15 297 115 349 167 0 0 chr12 71044746 71044800 -72741655 - Alu SINE Alu -247 56 3 350 304 36 0 chr12 71045066 71045204 -72741251 + MLT1J LTR MaLR 3 145 -366 1223 253 80 22 chr12 71045227 71045656 -72740799 + MLT1F1 LTR MaLR 7 460 -107 25 0 0 0 chr12 71045846 71045871 -72740584 + AT_rich Low_complexity Low_complexity 1 25 0 2000 148 13 13 chr12 71045944 71046134 -72740321 - AluSx SINE Alu -1 311 119 231 61 0 0 chr12 71046134 71046167 -72740288 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2000 148 13 13 chr12 71046167 71046287 -72740168 - AluSx SINE Alu -192 120 1 2254 103 7 3 chr12 71046564 71046874 -72739581 + AluSq SINE Alu 1 311 -2 684 220 215 0 chr12 71047429 71047629 -72738826 + MIR SINE MIR 5 247 -15 5003 56 28 0 chr12 71050724 71051404 -72735051 + L1PA6 LINE L1 5254 5952 -202 378 347 7 0 chr12 71052022 71052172 -72734283 + MLT1J LTR MaLR 266 416 -95 232 167 0 37 chr12 71052220 71052274 -72734181 - MADE1 DNA Mariner 0 80 29 2387 98 0 0 chr12 71052435 71052742 -72733713 + AluSx SINE Alu 5 311 -1 21 36 0 0 chr12 71053059 71053087 -72733368 + AT_rich Low_complexity Low_complexity 1 28 0 320 196 190 31 chr12 71053541 71053704 -72732751 - L1ME4a LINE L1 -2 6119 5931 545 300 108 14 chr12 71053840 71054063 -72732392 - MIR SINE MIR -2 260 17 349 224 0 38 chr12 71054063 71054181 -72732274 - L1ME4a LINE L1 -316 5805 5701 256 320 10 0 chr12 71054191 71054294 -72732161 + (CATAA)n Simple_repeat Simple_repeat 2 105 0 23 97 0 0 chr12 71054436 71054508 -72731947 + AT_rich Low_complexity Low_complexity 1 72 0 1908 163 0 3 chr12 71054558 71054859 -72731596 - AluJb SINE Alu -2 310 11 305 208 132 75 chr12 71054869 71055028 -72731427 - L1ME4a LINE L1 -864 5282 5115 21 0 0 0 chr12 71056017 71056038 -72730417 + AT_rich Low_complexity Low_complexity 1 21 0 1852 135 4 0 chr12 71056154 71056413 -72730042 - AluSg SINE Alu -31 279 20 219 204 0 0 chr12 71056436 71056485 -72729970 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 54 0 0 chr12 71056562 71056599 -72729856 + AT_rich Low_complexity Low_complexity 1 37 0 871 193 5 11 chr12 71056624 71056811 -72729644 + LTR41 LTR ERVL 1 186 -587 596 201 49 161 chr12 71056915 71057080 -72729375 + LTR41 LTR ERVL 475 657 -116 2084 116 7 7 chr12 71057080 71057373 -72729082 - AluSx SINE Alu -15 297 5 596 201 49 161 chr12 71057373 71057464 -72728991 + LTR41 LTR ERVL 657 689 -84 1724 165 16 29 chr12 71057464 71057779 -72728676 - AluJo SINE Alu -1 311 1 596 201 49 161 chr12 71057779 71057850 -72728605 + LTR41 LTR ERVL 689 766 -7 2401 54 3 16 chr12 71057918 71058231 -72728224 + L1PA8 LINE L1 5858 6166 -6 961 267 103 30 chr12 71058641 71059068 -72727387 - MLT1G1 LTR MaLR -1 594 137 411 0 0 0 chr12 71059531 71059581 -72726874 - L1P1 LINE L1 -675 5480 5431 5645 12 0 0 chr12 71059581 71060220 -72726235 + L1PA2 LINE L1 5517 6155 0 27 29 0 0 chr12 71060220 71060254 -72726201 + AT_rich Low_complexity Low_complexity 1 34 0 266 337 93 25 chr12 71060350 71060706 -72725749 - L1M4 LINE L1 -1980 4166 3787 2537 165 29 61 chr12 71060811 71061368 -72725087 - MER44D DNA MER2_type -10 595 2 334 267 83 50 chr12 71061545 71061869 -72724586 - MLT1I LTR MaLR 0 450 83 4143 242 50 19 chr12 71062132 71062891 -72723564 + L1MEc LINE L1 55 725 -5492 2139 96 0 3 chr12 71062891 71063207 -72723248 + AluY SINE Alu 1 315 0 4143 242 50 19 chr12 71063207 71063768 -72722687 + L1MEc LINE L1 725 1267 -4950 23 0 0 0 chr12 71063768 71063791 -72722664 + AT_rich Low_complexity Low_complexity 1 23 0 2552 65 0 3 chr12 71063794 71064101 -72722354 + AluY SINE Alu 1 306 -5 342 310 26 0 chr12 71064909 71065025 -72721430 - MIR3 SINE MIR -21 187 69 1131 281 76 49 chr12 71065386 71065859 -72720596 + L2 LINE L2 2828 3313 0 387 89 0 0 chr12 71066067 71066123 -72720332 + (ATG)n Simple_repeat Simple_repeat 2 57 0 406 322 9 9 chr12 71066123 71066238 -72720217 - MIR SINE MIR -78 130 16 1522 160 35 123 chr12 71067607 71068007 -72718448 - MLT1A1 LTR MaLR 0 365 1 1430 190 117 8 chr12 71068007 71068401 -72718054 + L1MC4 LINE L1 6673 7109 -933 668 199 59 11 chr12 71068395 71068581 -72717874 + L1MC4 LINE L1 7688 7882 -160 * 303 203 0 0 chr12 71068590 71068654 -72717801 + (TA)n Simple_repeat Simple_repeat 2 65 0 2108 113 7 0 chr12 71068845 71069136 -72717319 - AluSx SINE Alu -19 293 1 1084 228 81 23 chr12 71069147 71069541 -72716914 - L1ME3A LINE L1 -14 6156 5740 200 125 25 0 chr12 71069552 71069592 -72716863 + (CGCGG)n Simple_repeat Simple_repeat 1 41 0 326 283 175 54 chr12 71069626 71069923 -72716532 - L1M2 LINE L1 -5831 1018 686 185 243 0 0 chr12 71070302 71070339 -72716116 + L3 LINE CR1 1540 1576 -1 22 0 0 0 chr12 71070521 71070543 -72715912 + AT_rich Low_complexity Low_complexity 1 22 0 376 337 96 16 chr12 71070679 71070866 -72715589 + MIR SINE MIR 49 250 -12 2262 113 3 0 chr12 71070895 71071206 -72715249 - AluSp SINE Alu -1 312 1 1921 254 71 28 chr12 71071217 71071731 -72714724 - L1ME3A LINE L1 -14 6156 5665 264 30 0 0 chr12 71071731 71071764 -72714691 + (CA)n Simple_repeat Simple_repeat 2 34 0 4741 156 30 26 chr12 71071766 71071814 -72714641 + MER6 DNA MER2_type 2 48 -817 2047 121 0 0 chr12 71071814 71072086 -72714369 - AluSx SINE Alu -22 290 19 4741 156 30 26 chr12 71072086 71072268 -72714187 + MER6 DNA MER2_type 48 228 -637 315 0 0 0 chr12 71072268 71072303 -72714152 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 363 44 0 0 chr12 71072302 71072347 -72714108 + (GA)n Simple_repeat Simple_repeat 1 45 0 4741 156 30 26 chr12 71072303 71072974 -72713481 + MER6 DNA MER2_type 228 864 -1 240 35 0 0 chr12 71072975 71073004 -72713451 + (TG)n Simple_repeat Simple_repeat 2 30 0 1921 254 71 28 chr12 71073004 71073150 -72713305 - L1ME3A LINE L1 -505 5665 5457 2302 231 32 37 chr12 71073150 71073746 -72712709 - MLT1E LTR MaLR 0 593 1 1921 254 71 28 chr12 71073746 71073783 -72712672 - L1ME3A LINE L1 -713 5457 5423 1711 154 4 7 chr12 71074500 71074772 -72711683 + AluJb SINE Alu 1 271 -41 233 163 20 0 chr12 71074979 71075028 -72711427 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 207 0 0 chr12 71075051 71075109 -72711346 + (TA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr12 71075985 71076015 -72710440 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr12 71076093 71076116 -72710339 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 195 284 34 68 chr12 71076133 71076221 -72710234 - MIR SINE MIR -167 95 11 1373 134 4 0 chr12 71076715 71076946 -72709509 - L1MA2 LINE L1 -10 6294 6063 251 367 8 19 chr12 71076948 71077212 -72709243 - L1MEc LINE L1 -5034 1362 1102 338 94 0 0 chr12 71077244 71077297 -72709158 - L1MB7 LINE L1 -10 6174 6122 203 340 20 54 chr12 71077766 71077913 -72708542 - MER5A DNA MER1_type -38 151 10 2288 100 0 0 chr12 71078681 71078972 -72707483 - AluSx SINE Alu -11 301 11 21 36 0 0 chr12 71079071 71079099 -72707356 + AT_rich Low_complexity Low_complexity 1 28 0 607 268 77 3 chr12 71079128 71079427 -72707028 + L1ME LINE L1 5012 5332 -814 1157 33 0 7 chr12 71079429 71079579 -72706876 - L1PA7 LINE L1 -207 5947 5799 1239 93 50 0 chr12 71079580 71079762 -72706693 + L1PA7 LINE L1 5960 6150 -4 803 287 28 8 chr12 71080021 71080272 -72706183 - MIR SINE MIR -6 256 1 538 275 172 19 chr12 71080425 71080687 -72705768 - LTR67 LTR ERVL -254 303 2 359 339 111 10 chr12 71080691 71080954 -72705501 + L1ME LINE L1 5480 5786 -384 2882 169 4 24 chr12 71080957 71081001 -72705454 - MER49 LTR ERV1 0 923 880 1657 171 19 26 chr12 71081001 71081311 -72705144 - AluJo SINE Alu -4 308 1 2882 169 4 24 chr12 71081311 71081817 -72704638 - MER49 LTR ERV1 -43 880 384 847 212 6 6 chr12 71081837 71082007 -72704448 - FRAM SINE Alu -3 173 4 2234 122 39 23 chr12 71082012 71082396 -72704059 - MER49 LTR ERV1 -528 395 6 298 306 102 0 chr12 71082477 71082634 -72703821 + L1ME LINE L1 5653 5825 -345 2303 94 3 0 chr12 71082862 71083159 -72703296 + AluY SINE Alu 1 298 -13 195 285 54 54 chr12 71084186 71084316 -72702139 + L3b LINE CR1 1180 1309 -274 411 282 55 49 chr12 71084800 71084963 -72701492 + L3 LINE CR1 1074 1237 -340 402 246 37 88 chr12 71085658 71085873 -72700582 + MIR SINE MIR 47 250 -12 182 294 176 0 chr12 71085914 71085982 -72700473 + L2 LINE L2 3230 3309 -4 919 187 44 6 chr12 71086962 71087144 -72699311 - MER5A DNA MER1_type 0 189 1 1626 187 3 34 chr12 71087386 71087707 -72698748 + AluJo SINE Alu 1 311 -1 261 253 149 35 chr12 71088335 71088422 -72698033 - L2 LINE L2 -36 3277 3181 349 229 19 16 chr12 71089230 71089349 -72697106 - MLT1J1 LTR MaLR 0 446 335 408 317 96 10 chr12 71089360 71089559 -72696896 - MLT1J2 LTR MaLR -163 287 72 364 311 37 19 chr12 71090236 71090397 -72696058 - MLT1I LTR MaLR -18 391 228 1939 164 7 0 chr12 71090872 71091171 -72695284 - AluJo SINE Alu -9 303 3 1009 243 9 0 chr12 71091793 71092011 -72694444 + MER58A DNA MER1_type 5 224 0 247 133 22 0 chr12 71092135 71092180 -72694275 - MLT1J LTR MaLR -364 147 102 182 305 30 114 chr12 71092611 71092742 -72693713 - L2 LINE L2 -20 3252 3133 25 0 0 0 chr12 71093684 71093709 -72692746 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr12 71094138 71094164 -72692291 + AT_rich Low_complexity Low_complexity 1 26 0 2406 121 11 21 chr12 71094715 71095094 -72691361 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr12 71095475 71095498 -72690957 + AT_rich Low_complexity Low_complexity 1 23 0 2307 166 13 5 chr12 71097504 71097895 -72688560 + MSTD LTR MaLR 3 396 0 1225 241 31 95 chr12 71098335 71098891 -72687564 - MLT2B1 LTR ERVL 0 520 1 1154 277 34 17 chr12 71099014 71099426 -72687029 - LTR16A LTR ERVL -31 419 1 231 250 0 36 chr12 71102075 71102131 -72684324 + L2 LINE L2 3246 3299 -14 19745 58 5 8 chr12 71102131 71104894 -72681561 + L1P LINE L1 2517 5269 -877 31078 92 19 21 chr12 71105062 71110748 -72675707 + L1MA4A LINE L1 604 6299 -4 1851 140 0 14 chr12 71110843 71111128 -72675327 + AluSx SINE Alu 1 281 -31 1755 168 3 38 chr12 71111656 71111971 -72674484 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr12 71112490 71112526 -72673929 + AT_rich Low_complexity Low_complexity 1 36 0 186 133 0 0 chr12 71112878 71112908 -72673547 + (CCA)n Simple_repeat Simple_repeat 2 31 0 505 294 0 53 chr12 71112908 71113016 -72673439 - MIR SINE MIR -4 258 163 439 239 86 6 chr12 71113016 71113179 -72673276 - MER104 DNA MER2_type 0 180 5 505 294 0 53 chr12 71113179 71113257 -72673198 - MIR SINE MIR -99 163 82 223 311 134 49 chr12 71113275 71113439 -72673016 + MIR3 SINE MIR 6 183 -25 372 278 57 51 chr12 71113584 71113760 -72672695 + MIR SINE MIR 8 184 -78 1852 81 4 0 chr12 71113863 71114146 -72672309 + AluSc SINE Alu 45 328 0 552 253 155 51 chr12 71114505 71114736 -72671719 + MLT1K LTR MaLR 241 511 -77 927 51 0 0 chr12 71114736 71114853 -72671602 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 552 253 155 51 chr12 71114853 71114917 -72671538 + MLT1K LTR MaLR 511 567 -21 234 319 0 0 chr12 71117172 71117244 -72669211 + MIR SINE MIR 78 149 -113 310 274 0 96 chr12 71118335 71118481 -72667974 - L1ME4a LINE L1 -1 6120 5989 635 122 19 0 chr12 71118781 71118888 -72667567 + C-rich Low_complexity Low_complexity 4 112 0 230 269 64 7 chr12 71119205 71119346 -72667109 + (CCTAA)n Simple_repeat Simple_repeat 5 153 0 340 130 29 0 chr12 71120268 71120337 -72666118 + CT-rich Low_complexity Low_complexity 1 71 0 555 317 98 4 chr12 71121473 71121994 -72664461 + L1MEc LINE L1 1081 1650 -4746 561 175 25 33 chr12 71122358 71122478 -72663977 - AluJo SINE Alu -177 135 17 3283 113 14 20 chr12 71122484 71122501 -72663954 - L1PA5 LINE L1 0 6154 6138 207 0 0 0 chr12 71122501 71122524 -72663931 + (TA)n Simple_repeat Simple_repeat 1 23 0 3283 113 14 20 chr12 71122524 71123062 -72663393 - L1PA5 LINE L1 -16 6138 5602 1048 277 104 33 chr12 71123398 71124497 -72661958 + L1MEc LINE L1 2408 3584 -2631 1526 130 4 37 chr12 71125727 71125997 -72660458 + AluSx SINE Alu 1 261 -51 456 139 0 139 chr12 71127093 71127287 -72659168 - AluSq SINE Alu -85 228 62 402 292 134 28 chr12 71128610 71128826 -72657629 + MIR SINE MIR 24 262 0 221 373 169 30 chr12 71128928 71129164 -72657291 + L3 LINE CR1 186 454 -1123 363 363 46 30 chr12 71129172 71129434 -72657021 + L3 LINE CR1 413 678 -899 482 294 92 39 chr12 71129737 71130594 -72655861 - L1MEd LINE L1 -4704 1692 790 2620 104 18 10 chr12 71130795 71131189 -72655266 + L1PA14 LINE L1 5765 6161 0 639 252 65 0 chr12 71131218 71131373 -72655082 + MER96 DNA MER1_type? 11 175 0 307 309 49 35 chr12 71131373 71131779 -72654676 - L1MEd LINE L1 -4752 1558 1116 1785 188 18 3 chr12 71131779 71132120 -72654335 - MER7A DNA MER2_type -1 345 2 307 309 49 35 chr12 71132120 71132345 -72654110 - L1MEd LINE L1 -5194 1116 896 786 286 35 4 chr12 71133083 71133310 -72653145 - MIR SINE MIR -21 241 8 23683 62 5 2 chr12 71134054 71139586 -72646869 + L1PA5 LINE L1 604 6154 0 628 289 86 5 chr12 71140152 71140349 -72646106 - MIR SINE MIR -48 214 2 408 297 173 12 chr12 71140634 71140883 -72645572 - L2 LINE L2 -33 3280 2992 351 268 181 22 chr12 71140912 71141050 -72645405 - L2 LINE L2 -613 2701 2542 502 264 77 65 chr12 71141050 71141452 -72645003 - L1M4 LINE L1 -2393 3753 3347 415 299 91 13 chr12 71141815 71142123 -72644332 - L1MC4a LINE L1 -1773 6035 5704 274 384 12 12 chr12 71142731 71142903 -72643552 + HERV16 LTR ERVL 23 194 -4802 580 248 123 4 chr12 71143134 71143499 -72642956 + LTR50 LTR ERVL 84 684 -51 803 319 89 46 chr12 71143552 71144372 -72642083 + HERV16 LTR ERVL 1121 1975 -3789 1237 365 38 44 chr12 71144395 71145462 -72640993 + HERV16 LTR ERVL 407 1467 -3529 2647 329 46 31 chr12 71145773 71145841 -72640614 + HERV16 LTR ERVL 1513 1579 -4185 438 222 63 0 chr12 71145841 71145967 -72640488 - MER94 DNA DNA 0 134 1 2647 329 46 31 chr12 71145967 71147486 -72638969 + HERV16 LTR ERVL 1579 3186 -2578 507 246 52 5 chr12 71147489 71147680 -72638775 - L1M4 LINE L1 -1679 4467 4268 * 1908 274 58 8 chr12 71147678 71148283 -72638172 - L1MEc LINE L1 -5585 811 177 544 299 48 68 chr12 71149622 71149973 -72636482 + L2 LINE L2 2928 3271 -42 857 203 87 34 chr12 71150185 71150392 -72636063 - MER20 DNA MER1_type 0 219 2 329 293 32 8 chr12 71150663 71150786 -72635669 - L1ME4a LINE L1 -268 5853 5728 383 294 71 81 chr12 71151032 71151195 -72635260 - L1ME4a LINE L1 -801 5345 5182 2452 148 42 0 chr12 71151195 71151599 -72634856 + MSTB LTR MaLR 4 424 -2 383 294 71 81 chr12 71151599 71151914 -72634541 - L1ME4a LINE L1 -964 5182 4872 2618 221 109 45 chr12 71152017 71153558 -72632897 - L1ME1 LINE L1 -5 6161 4525 7588 138 10 15 chr12 71153569 71154834 -72631621 - Tigger4(Zombi) DNA MER2_type -6 2725 1467 975 173 0 6 chr12 71154838 71155000 -72631455 - Tigger4(Zombi) DNA MER2_type -2570 161 1 324 146 18 0 chr12 71154952 71155007 -72631448 + MER46A DNA MER2_type 97 152 -84 * 1322 216 55 46 chr12 71155007 71155443 -72631012 - L1ME1 LINE L1 -1635 4511 4072 785 239 34 34 chr12 71155509 71155718 -72630737 - MIR SINE MIR -14 248 40 407 309 36 41 chr12 71156355 71156549 -72629906 + MIR SINE MIR 28 220 -42 27 29 0 0 chr12 71157999 71158033 -72628422 + AT_rich Low_complexity Low_complexity 1 34 0 32115 74 3 5 chr12 71158178 71163581 -72622874 + L1PA5 LINE L1 1075 6454 -15 618 14 0 0 chr12 71163581 71163652 -72622803 + (TA)n Simple_repeat Simple_repeat 2 72 0 1685 125 9 63 chr12 71163952 71164271 -72622184 - THE1B LTR MaLR -62 302 1 10335 121 24 2 chr12 71164271 71165817 -72620638 - THE1B-int LTR MaLR 0 1580 1 1943 161 25 30 chr12 71165817 71166183 -72620272 - THE1B LTR MaLR 0 364 1 1491 161 157 13 chr12 71166183 71166488 -72619967 + MSTA LTR MaLR 80 428 0 8991 153 11 30 chr12 71166490 71168099 -72618356 + MSTA-int LTR MaLR 3 1580 0 1625 178 121 21 chr12 71168099 71168487 -72617968 + MSTA LTR MaLR 1 427 -1 326 292 60 30 chr12 71168705 71168938 -72617517 + HAL1 LINE L1 1230 1469 -1038 21 0 0 0 chr12 71169248 71169269 -72617186 + AT_rich Low_complexity Low_complexity 1 21 0 1769 157 38 0 chr12 71169459 71169752 -72616703 + AluJb SINE Alu 2 305 -7 412 128 101 0 chr12 71170091 71170209 -72616246 + L1M1 LINE L1 5460 5589 -619 22 20 8 0 chr12 71172120 71172191 -72614264 + AT_rich Low_complexity Low_complexity 1 29 0 3184 133 16 9 chr12 71172397 71172945 -72613510 - L1MA4A LINE L1 -8 6295 5744 6594 89 3 0 chr12 71173141 71174277 -72612178 + L1PA8 LINE L1 5024 6162 -10 1927 139 7 0 chr12 71174525 71174813 -72611642 - AluSx SINE Alu -22 290 1 404 241 0 0 chr12 71174949 71175028 -72611427 - MER2 DNA MER2_type 0 345 267 227 100 25 0 chr12 71175111 71175151 -72611304 - MER2 DNA MER2_type -172 173 133 1567 87 95 8 chr12 71175279 71175531 -72610924 + MER61A-int LTR ERV1 4941 5214 -3 1881 139 54 21 chr12 71175534 71175866 -72610589 + MER61A LTR ERV1 1 343 0 529 232 50 50 chr12 71175871 71176052 -72610403 - Charlie1a DNA MER1_type -374 1081 901 * 1752 264 51 69 chr12 71176050 71176758 -72609697 - Charlie1a DNA MER1_type -758 697 3 2886 238 24 40 chr12 71177924 71178745 -72607710 - L1MA9 LINE L1 -38 6274 5467 519 171 124 0 chr12 71178752 71178857 -72607598 + AluJb SINE Alu 1 118 -194 1132 232 90 73 chr12 71178857 71179279 -72607176 - MLT2B3 LTR ERVL -4 550 122 799 57 0 0 chr12 71180266 71180371 -72606084 - L1PA5 LINE L1 -1 6153 6049 1479 146 40 4 chr12 71181297 71181571 -72604884 + L1P LINE L1 3779 4062 -2084 838 192 27 0 chr12 71181585 71181731 -72604724 + LOR1a LTR ERV1 348 497 0 444 318 93 0 chr12 71181743 71181957 -72604498 - L1ME LINE L1 -447 5723 5490 1875 199 14 6 chr12 71183496 71183858 -72602597 + MLT1A1 LTR MaLR 1 365 0 296 280 0 0 chr12 71183909 71184002 -72602453 - MER69 DNA AcHobo -8 2518 2426 322 314 38 13 chr12 71184071 71184230 -72602225 + MIR SINE MIR 97 259 -3 23 68 0 0 chr12 71185141 71185185 -72601270 + AT_rich Low_complexity Low_complexity 1 44 0 3673 110 13 11 chr12 71185320 71185873 -72600582 + MER41A LTR ERV1 1 554 0 845 330 92 45 chr12 71186162 71187076 -72599379 - L2 LINE L2 -443 2871 1915 2281 113 0 0 chr12 71187239 71187541 -72598914 + AluSx SINE Alu 1 302 -10 487 148 119 20 chr12 71187617 71187718 -72598737 - FLAM_C SINE Alu -13 130 20 426 303 17 29 chr12 71188088 71188263 -72598192 + FAM SINE Alu 1 44 -5 1001 329 91 38 chr12 71188666 71189580 -72596875 - L2 LINE L2 -438 2876 1915 2281 113 0 0 chr12 71189743 71190045 -72596410 + AluSx SINE Alu 1 302 -10 634 192 56 24 chr12 71190113 71190238 -72596217 - FLAM_A SINE Alu -1 132 4 365 263 50 0 chr12 71190580 71190679 -72595776 - MIR SINE MIR -75 187 84 203 237 0 0 chr12 71190924 71190962 -72595493 + (CACCAT)n Simple_repeat Simple_repeat 5 42 0 2167 76 0 11 chr12 71191420 71191696 -72594759 + AluSg SINE Alu 30 302 -8 21 0 0 0 chr12 71192219 71192240 -72594215 + AT_rich Low_complexity Low_complexity 1 21 0 1988 127 35 0 chr12 71193065 71193349 -72593106 - AluSp SINE Alu -19 294 1 28 29 0 0 chr12 71193352 71193387 -72593068 + AT_rich Low_complexity Low_complexity 1 35 0 707 184 9 0 chr12 71193785 71193899 -72592556 + FLAM_C SINE Alu 10 124 -19 1561 130 118 11 chr12 71194920 71195190 -72591265 - AluSg SINE Alu -9 301 3 185 271 68 34 chr12 71196174 71196233 -72590222 - L2 LINE L2 -51 3221 3161 186 133 0 0 chr12 71197374 71197404 -72589051 + (CCA)n Simple_repeat Simple_repeat 2 31 0 537 283 0 53 chr12 71197404 71197512 -72588943 - MIR SINE MIR -4 258 163 525 233 86 6 chr12 71197512 71197675 -72588780 - MER104 DNA MER2_type 0 180 5 537 283 0 53 chr12 71197675 71197753 -72588702 - MIR SINE MIR -99 163 82 231 305 134 49 chr12 71197771 71197935 -72588520 + MIR3 SINE MIR 6 183 -25 4047 125 91 52 chr12 71198062 71198812 -72587643 - THE1C-int LTR MaLR -798 782 4 2001 161 65 8 chr12 71198815 71199170 -72587285 - THE1C LTR MaLR 0 375 1 1063 329 58 24 chr12 71199188 71199656 -72586799 + L1M4b LINE L1 600 1083 -5776 7418 166 48 32 chr12 71199757 71201320 -72585135 + L1P3 LINE L1 557 2273 -4188 325 119 288 0 chr12 71201520 71201579 -72584876 + MADE1 DNA Mariner 1 76 -4 297 0 0 0 chr12 71201706 71201739 -72584716 + (TG)n Simple_repeat Simple_repeat 2 34 0 2257 58 4 0 chr12 71201739 71202015 -72584440 - AluY SINE Alu -34 277 1 832 220 133 20 chr12 71202126 71202426 -72584029 - Charlie1 DNA MER1_type -42 2719 2386 1710 178 74 21 chr12 71202426 71202752 -72583703 + MER61A LTR ERV1 1 343 0 2525 210 55 14 chr12 71202752 71203333 -72583122 + MER61A-int LTR ERV1 1 605 -4612 1670 124 34 0 chr12 71203495 71203762 -72582693 - L1MA2 LINE L1 -310 5994 5719 * 2795 144 56 27 chr12 71203755 71204323 -72582132 - L1M1 LINE L1 -513 5791 5207 2174 141 0 6 chr12 71204442 71204768 -72581687 + L1P3 LINE L1 10 333 -6128 402 102 0 0 chr12 71204784 71204843 -72581612 + L1P3 LINE L1 522 580 -5881 25 0 0 0 chr12 71205230 71205255 -72581200 + AT_rich Low_complexity Low_complexity 1 25 0 483 331 91 57 chr12 71205339 71205586 -72580869 + L2 LINE L2 1269 1506 -1808 2036 109 21 3 chr12 71205586 71205871 -72580584 + AluSx SINE Alu 13 302 -10 483 331 91 57 chr12 71205871 71206052 -72580403 + L2 LINE L2 1506 1723 -1591 2095 221 38 50 chr12 71206052 71206528 -72579927 - MER70A LTR ERVL 0 472 3 483 331 91 57 chr12 71206528 71206647 -72579808 + L2 LINE L2 1723 1836 -1478 339 323 8 8 chr12 71208415 71208545 -72577910 - MER69 DNA AcHobo -2396 130 1 2239 94 0 3 chr12 71208767 71209064 -72577391 - AluSc SINE Alu -13 296 1 237 189 94 0 chr12 71209402 71209455 -72577000 - MER34B LTR ERV1 0 565 508 8853 80 5 2 chr12 71209587 71210785 -72575670 - L1P LINE L1 -2166 3980 2779 199 113 38 0 chr12 71210810 71210863 -72575592 + (CCCG)n Simple_repeat Simple_repeat 3 57 0 234 262 139 16 chr12 71211132 71211254 -72575201 - Charlie7 DNA MER1_type -2425 187 51 1800 206 15 0 chr12 71211700 71212040 -72574415 - LOR1b LTR ERV1 0 461 117 2025 123 17 13 chr12 71212528 71212830 -72573625 - AluSx SINE Alu -9 303 1 1587 203 3 7 chr12 71212854 71213154 -72573301 - AluJb SINE Alu -13 299 1 3050 151 83 33 chr12 71213281 71213909 -72572546 - Tigger3(Golem) DNA MER2_type 0 3029 2371 2368 238 12 12 chr12 71214041 71214630 -72571825 + L1 LINE L1 4677 5265 -881 1893 139 0 7 chr12 71215161 71215497 -72570958 - AluSq SINE Alu 0 339 6 7105 113 48 20 chr12 71215623 71215765 -72570690 - MER61-int LTR ERV1 -1205 6213 6077 616 112 0 0 chr12 71215765 71215854 -72570601 + AluS SINE Alu 224 312 0 7105 113 48 20 chr12 71215854 71216928 -72569527 - MER61-int LTR ERV1 -1341 6077 2220 1278 146 55 32 chr12 71217861 71218081 -72568374 - AluSg/x SINE Alu -16 296 72 338 283 79 45 chr12 71218126 71218303 -72568152 - L1MDb LINE L1 -5702 707 525 25 91 0 0 chr12 71220762 71220817 -72565638 + GC_rich Low_complexity Low_complexity 1 55 0 1883 179 52 3 chr12 71221143 71221473 -72564982 - MER7A DNA MER2_type -2 344 1 226 314 58 41 chr12 71222285 71222406 -72564049 - MIR SINE MIR -3 259 137 276 262 36 4 chr12 71222666 71222859 -72563596 + LTR37B LTR ERV1 200 464 -4 384 272 45 94 chr12 71223369 71223634 -72562821 + L1MDa LINE L1 26 277 -6263 204 216 0 0 chr12 71223657 71223694 -72562761 + GA-rich Low_complexity Low_complexity 2 38 0 3240 179 28 53 chr12 71223825 71224528 -72561927 + LTR1 LTR ERV1 1 686 -99 1789 138 0 8 chr12 71224645 71224906 -72561549 - AluSx SINE Alu -53 259 1 184 360 31 50 chr12 71225164 71225325 -72561130 - L2 LINE L2 -8 3264 3107 1163 138 17 0 chr12 71225903 71226084 -72560371 + AluSg/x SINE Alu 115 298 -14 319 318 84 0 chr12 71226086 71226193 -72560262 - MER5A DNA MER1_type -57 132 17 454 249 54 54 chr12 71226300 71226485 -72559970 + MIR SINE MIR 11 195 -67 1965 144 3 3 chr12 71226567 71226866 -72559589 + AluSx SINE Alu 1 299 -13 343 258 33 9 chr12 71226901 71227078 -72559377 - LTR16C LTR ERVL -244 247 1 202 293 0 0 chr12 71227080 71227121 -72559334 - L2 LINE L2 -13 3259 3219 1853 109 95 7 chr12 71227435 71227739 -72558716 + L1MA1 LINE L1 5972 6302 0 318 50 0 0 chr12 71228203 71228243 -72558212 + (TC)n Simple_repeat Simple_repeat 1 40 0 326 337 127 0 chr12 71228551 71228717 -72557738 + MER117 DNA MER1_type 10 196 -1 368 312 12 23 chr12 71229672 71229845 -72556610 + C-rich Low_complexity Low_complexity 1 171 0 283 360 12 17 chr12 71229881 71230053 -72556402 + C-rich Low_complexity Low_complexity 4 174 0 2411 122 33 20 chr12 71230154 71230547 -72555908 - MSTB LTR MaLR -28 398 1 488 301 40 41 chr12 71231311 71231522 -72554933 + MIR SINE MIR 2 210 -52 1319 154 0 36 chr12 71231562 71231812 -72554643 + AluJo SINE Alu 73 314 0 813 324 72 26 chr12 71233505 71233882 -72552573 + MLT1K LTR MaLR 2 395 -193 429 226 61 17 chr12 71234232 71234347 -72552108 - MIR SINE MIR -9 253 134 296 140 0 0 chr12 71234347 71234397 -72552058 - MIR SINE MIR -81 181 132 328 233 0 58 chr12 71234469 71234555 -72551900 + L2 LINE L2 3233 3313 0 412 240 20 10 chr12 71234780 71234880 -72551575 - MIR SINE MIR -136 126 26 1967 103 4 0 chr12 71235147 71235409 -72551046 - AluSc SINE Alu -1 308 46 905 280 154 35 chr12 71236144 71236198 -72550257 - L2 LINE L2 0 3313 3267 2334 92 0 35 chr12 71236198 71236513 -72549942 - AluSx SINE Alu -8 304 1 905 280 154 35 chr12 71236513 71237154 -72549301 - L2 LINE L2 -46 3267 2520 643 219 164 25 chr12 71238435 71238636 -72547819 + MIR SINE MIR 31 259 -3 19991 184 17 17 chr12 71239097 71244233 -72542222 - L1PA13 LINE L1 -3 7598 2471 2950 236 75 11 chr12 71244291 71245052 -72541403 - L1PA13 LINE L1 -5644 1937 1128 2458 150 8 3 chr12 71245052 71245425 -72541030 + THE1C LTR MaLR 1 375 0 3072 76 51 107 chr12 71245425 71245887 -72540568 + THE1C-int LTR MaLR 1 429 -1151 1918 137 23 16 chr12 71245887 71246194 -72540261 + AluSx SINE Alu 1 309 -3 3072 76 51 107 chr12 71246194 71246283 -72540172 + THE1C-int LTR MaLR 429 521 -1059 * 5632 120 2 1 chr12 71246277 71247069 -72539386 + THE1C-int LTR MaLR 788 1580 0 2710 124 8 0 chr12 71247071 71247441 -72539014 + THE1C LTR MaLR 3 375 0 4225 214 39 18 chr12 71247441 71248284 -72538171 - L1PA13 LINE L1 -6719 862 2 2021 164 62 8 chr12 71248288 71248642 -72537813 - Tigger2a DNA MER2_type -61 373 1 261 310 69 37 chr12 71248666 71248911 -72537544 + L1ME4a LINE L1 5689 5941 -180 249 262 0 0 chr12 71248985 71249046 -72537409 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1534 102 28 9 chr12 71249046 71249262 -72537193 - AluSq SINE Alu -93 220 1 250 270 2 0 chr12 71249391 71249454 -72537001 - MER91 DNA MER1_type 0 196 127 2212 152 21 15 chr12 71249697 71250032 -72536423 - MER1B DNA MER1_type 0 337 1 211 282 258 0 chr12 71252836 71252973 -72533482 - MER5C DNA MER1_type -6 183 5 411 278 62 7 chr12 71253060 71253204 -72533251 - L1ME4a LINE L1 -4 6117 5966 845 265 123 59 chr12 71253428 71254070 -72532385 - L1ME4a LINE L1 -299 5822 5141 181 0 0 65 chr12 71254360 71254391 -72532064 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1932 184 153 35 chr12 71254459 71254911 -72531544 + MLT1D LTR MaLR 1 505 0 614 189 8 31 chr12 71255193 71255320 -72531135 + MIR SINE MIR 139 262 0 2373 148 53 15 chr12 71255322 71255367 -72531088 - MLT2D LTR ERVL 0 414 372 477 0 0 0 chr12 71255367 71255420 -72531035 + (TG)n Simple_repeat Simple_repeat 2 54 0 2373 148 53 15 chr12 71255420 71255773 -72530682 - MLT2D LTR ERVL -42 372 1 241 247 68 0 chr12 71255774 71255847 -72530608 - L1ME4a LINE L1 -1975 4171 4094 21 0 0 0 chr12 71256123 71256144 -72530311 + AT_rich Low_complexity Low_complexity 1 21 0 303 242 0 0 chr12 71257345 71257411 -72529044 + MER103 DNA DNA 2 67 -99 676 307 70 4 chr12 71257534 71257775 -72528680 - MIR SINE MIR -1 261 5 384 236 0 0 chr12 71257812 71257884 -72528571 + MER2 DNA MER2_type 8 79 -266 852 247 133 44 chr12 71258848 71259119 -72527336 - MLT1H LTR MaLR 0 549 255 246 235 162 0 chr12 71259126 71259194 -72527261 - MLT1I LTR MaLR -228 181 103 376 216 0 145 chr12 71259584 71259715 -72526740 + MER34 LTR ERV1 1 112 -446 368 191 141 88 chr12 71259968 71260183 -72526272 + MER34 LTR ERV1 373 542 0 342 199 66 35 chr12 71260183 71260298 -72526157 + MLT1L LTR MaLR 386 611 -3 1160 286 20 30 chr12 71260302 71260700 -72525755 - L2 LINE L2 -971 2343 1950 272 367 143 31 chr12 71260810 71261096 -72525359 + L2 LINE L2 2909 3226 -46 294 235 51 71 chr12 71263413 71263511 -72522944 + MIR SINE MIR 117 212 -50 495 237 31 103 chr12 71263584 71263744 -72522711 + MIR SINE MIR 32 175 -87 2075 127 0 3 chr12 71263744 71264109 -72522346 - AluSx SINE Alu 0 364 1 495 237 31 103 chr12 71264109 71264188 -72522267 + MIR SINE MIR 175 258 -4 11973 172 97 91 chr12 71264738 71266793 -72519662 + L1MA1 LINE L1 14 2056 -5509 762 189 23 8 chr12 71266793 71266925 -72519530 + AluJo SINE Alu 2 135 -177 11973 172 97 91 chr12 71266925 71269090 -72517365 + L1MA1 LINE L1 2056 4381 -3184 1415 202 28 15 chr12 71269088 71269415 -72517040 + L1MA1 LINE L1 5550 5880 -1685 * 7016 109 35 3 chr12 71269408 71270805 -72515650 + L1MA1 LINE L1 6280 7721 0 390 42 0 0 chr12 71271269 71271317 -72515138 + (TC)n Simple_repeat Simple_repeat 1 48 0 326 337 127 0 chr12 71271624 71271790 -72514665 + MER117 DNA MER1_type 10 196 -1 2083 157 0 0 chr12 71274184 71274496 -72511959 - AluSx SINE Alu 0 312 1 46 0 0 0 chr12 71276138 71276184 -72510271 + AT_rich Low_complexity Low_complexity 1 46 0 239 260 167 10 chr12 71277709 71277805 -72508650 - MIR SINE MIR -32 230 120 320 255 39 39 chr12 71278866 71279019 -72507436 - L1ME4a LINE L1 -5 6116 5964 * 909 292 117 29 chr12 71279008 71279252 -72507203 - L1MC4a LINE L1 -1863 5945 5724 3861 148 5 32 chr12 71279252 71279874 -72506581 - MER6A DNA MER2_type 0 605 1 909 292 117 29 chr12 71279874 71280253 -72506202 - L1MC4a LINE L1 -2084 5724 5267 575 261 75 27 chr12 71280611 71280799 -72505656 + MIR SINE MIR 14 210 -52 1157 262 145 18 chr12 71281605 71282091 -72504364 + L2 LINE L2 2758 3303 -10 2850 83 22 11 chr12 71282266 71282626 -72503829 + THE1B LTR MaLR 1 364 0 2057 234 122 18 chr12 71282726 71283387 -72503068 + L1ME3 LINE L1 5416 6144 -18 210 163 23 0 chr12 71283505 71283548 -72502907 + G-rich Low_complexity Low_complexity 3 46 0 2585 133 47 47 chr12 71284203 71284631 -72501824 - MSTA LTR MaLR 0 428 1 28 29 0 0 chr12 71287159 71287194 -72499261 + AT_rich Low_complexity Low_complexity 1 35 0 694 241 24 18 chr12 71287761 71287931 -72498524 + MER5B DNA MER1_type 8 178 0 358 313 52 9 chr12 71288803 71288918 -72497537 - L2 LINE L2 0 3272 3153 216 380 9 9 chr12 71288947 71289055 -72497400 + L2 LINE L2 2934 3041 -231 2182 132 0 77 chr12 71289056 71289122 -72497333 + MER1B DNA MER1_type 2 71 -2641 2261 107 24 0 chr12 71289122 71289420 -72497035 + AluSq SINE Alu 1 305 -8 2182 132 0 77 chr12 71289420 71289718 -72496737 + MER1B DNA MER1_type 71 338 -1 565 319 19 93 chr12 71289720 71289977 -72496478 + L2 LINE L2 3035 3272 0 216 297 101 40 chr12 71290012 71290160 -72496295 - L2 LINE L2 -183 3089 2933 2039 113 17 23 chr12 71290683 71290983 -72495472 - AluSg SINE Alu -12 298 1 300 319 121 0 chr12 71291138 71291254 -72495201 - L2 LINE L2 0 3272 3143 800 241 12 6 chr12 71291338 71291508 -72494947 + MER5A DNA MER1_type 19 189 0 1978 126 62 59 chr12 71291803 71292177 -72494278 - THE1C LTR MaLR 0 375 1 182 214 24 0 chr12 71294044 71294086 -72492369 + MIR SINE MIR 99 141 -67 2216 127 0 0 chr12 71294117 71294417 -72492038 + AluSx SINE Alu 5 304 -8 228 344 0 0 chr12 71295437 71295498 -72490957 + L2 LINE L2 3136 3196 -76 1929 153 70 25 chr12 71295871 71296230 -72490225 - THE1C LTR MaLR 0 375 1 1844 97 0 8 chr12 71296554 71296791 -72489664 - AluSx SINE Alu -77 235 1 918 269 85 41 chr12 71297230 71297594 -72488861 + L2 LINE L2 2933 3312 -1 4045 163 50 32 chr12 71297913 71298716 -72487739 + L1MA9 LINE L1 5486 6302 -10 322 223 182 9 chr12 71299353 71299465 -72486990 - MIR SINE MIR -64 144 32 216 245 0 0 chr12 71299641 71299690 -72486765 + GA-rich Low_complexity Low_complexity 2 50 0 336 125 0 0 chr12 71300189 71300253 -72486202 + (TC)n Simple_repeat Simple_repeat 2 65 0 1309 215 155 3 chr12 71300962 71301311 -72485144 - MER57A LTR ERV1 0 403 2 1999 117 4 0 chr12 71301649 71301915 -72484540 - AluSx SINE Alu -45 267 1 446 364 29 32 chr12 71302151 71302431 -72484024 - L2 LINE L2 -563 2751 2473 1617 159 14 35 chr12 71302754 71303043 -72483412 - AluJo SINE Alu -17 295 13 336 333 105 0 chr12 71303140 71303302 -72483153 + MIR SINE MIR 53 231 -31 598 293 122 9 chr12 71303330 71303559 -72482896 + MIR SINE MIR 8 262 0 307 301 55 7 chr12 71304503 71304664 -72481791 + MIR SINE MIR 6 170 -64 314 312 49 97 chr12 71304704 71305012 -72481443 + L2 LINE L2 2979 3271 -1 304 322 231 0 chr12 71306135 71306334 -72480121 + MIR SINE MIR 8 252 -10 184 231 144 58 chr12 71308857 71308961 -72477494 - MIR3 SINE MIR -95 113 1 406 223 46 46 chr12 71309119 71309249 -72477206 + MIR SINE MIR 14 143 -119 766 268 45 29 chr12 71309281 71309524 -72476931 - MIR SINE MIR -4 258 12 554 331 0 0 chr12 71309609 71309754 -72476701 + MIR SINE MIR 108 252 -10 306 136 0 0 chr12 71311075 71311119 -72475336 + U2 snRNA snRNA 1 44 -144 2118 74 0 7 chr12 71311761 71312031 -72474424 + AluSc SINE Alu 41 308 -1 227 200 0 36 chr12 71312799 71312854 -72473601 + L2 LINE L2 3032 3084 -188 1818 102 28 4 chr12 71312921 71313176 -72473279 - HSMAR1 DNA Mariner -4 1283 1023 1251 92 0 6 chr12 71313163 71313327 -72473128 + HSMAR1 DNA Mariner 559 721 -566 * 4058 90 9 6 chr12 71313327 71313869 -72472586 - HSMAR1 DNA Mariner -271 1016 473 1277 215 121 21 chr12 71313961 71314300 -72472155 - MER93b LTR ERV1 0 373 1 4203 103 15 0 chr12 71314324 71314870 -72471585 + MER41A LTR ERV1 1 554 0 580 217 189 111 chr12 71315394 71315897 -72470558 + MER34 LTR ERV1 1 542 0 200 176 59 15 chr12 71316018 71316086 -72470369 + (TA)n Simple_repeat Simple_repeat 1 71 0 44 0 0 0 chr12 71316230 71316274 -72470181 + AT_rich Low_complexity Low_complexity 1 44 0 1704 165 0 4 chr12 71316421 71316693 -72469762 - AluJb SINE Alu -9 303 33 795 231 10 35 chr12 71316992 71317191 -72469264 - MLT1K LTR MaLR 0 588 395 2129 106 3 7 chr12 71317594 71317931 -72468524 - AluSg SINE Alu 0 310 1 25 0 0 0 chr12 71318007 71318032 -72468423 + AT_rich Low_complexity Low_complexity 1 25 0 191 238 0 16 chr12 71318553 71318616 -72467839 + GA-rich Low_complexity Low_complexity 2 63 0 288 365 56 25 chr12 71318664 71318825 -72467630 + MIR SINE MIR 21 191 -71 2126 123 3 0 chr12 71318825 71319118 -72467337 + AluSq SINE Alu 1 294 -19 288 365 56 25 chr12 71319118 71319153 -72467302 + MIR SINE MIR 191 223 -39 716 182 30 64 chr12 71320603 71320806 -72465649 + L1MC4 LINE L1 7662 7857 -185 269 384 9 0 chr12 71320828 71320940 -72465515 + MER5B DNA MER1_type 59 171 -7 595 239 0 44 chr12 71321554 71321713 -72464742 - MER103 DNA DNA -4 162 11 368 254 219 32 chr12 71322041 71322131 -72464324 + L2 LINE L2 2455 2527 -787 1455 179 0 0 chr12 71322131 71322377 -72464078 - AluJb SINE Alu -66 246 1 368 254 219 32 chr12 71322377 71322453 -72464002 + L2 LINE L2 2527 2588 -726 2130 146 60 14 chr12 71322453 71322802 -72463653 + MLT1A1 LTR MaLR 1 365 0 368 254 219 32 chr12 71322802 71323004 -72463451 + L2 LINE L2 2588 2893 -421 317 252 117 10 chr12 71323183 71323286 -72463169 + MER5C DNA MER1_type 9 122 -202 228 212 182 0 chr12 71323403 71323469 -72462986 + MER5C DNA MER1_type 247 324 0 213 341 11 66 chr12 71323514 71323696 -72462759 + L2 LINE L2 3118 3289 -24 370 310 26 0 chr12 71324492 71324608 -72461847 + MIR3 SINE MIR 90 208 0 2383 103 3 0 chr12 71324912 71325224 -72461231 - AluSp SINE Alu 0 313 1 27873 63 8 3 chr12 71325400 71329852 -72456603 - L1PA6 LINE L1 0 6154 1712 513 258 7 60 chr12 71329947 71330054 -72456401 + MER5A DNA MER1_type 47 145 -44 882 212 18 72 chr12 71330054 71330276 -72456179 - MER63A DNA MER1_type 0 210 1 513 258 7 60 chr12 71330276 71330319 -72456136 + MER5A DNA MER1_type 145 189 0 21 0 0 0 chr12 71330572 71330593 -72455862 + AT_rich Low_complexity Low_complexity 1 21 0 2686 138 47 20 chr12 71330631 71331138 -72455317 - L1MA9 LINE L1 -25 6287 5767 2270 93 3 16 chr12 71331272 71331584 -72454871 + AluY SINE Alu 2 309 -2 1126 239 9 0 chr12 71333256 71333474 -72452981 - MER58A DNA MER1_type -1 223 4 22 35 0 0 chr12 71333950 71333979 -72452476 + AT_rich Low_complexity Low_complexity 1 29 0 2135 307 68 38 chr12 71334370 71335562 -72450893 - L2 LINE L2 -251 3062 1838 21 0 0 0 chr12 71335637 71335658 -72450797 + AT_rich Low_complexity Low_complexity 1 21 0 495 281 85 25 chr12 71336070 71336269 -72450186 + MLT1K LTR MaLR 378 588 0 279 194 9 148 chr12 71337192 71337287 -72449168 + L1ME LINE L1 5711 5785 -336 3707 103 124 14 chr12 71337287 71337858 -72448597 + MER51A LTR ERV1 1 634 0 279 194 9 148 chr12 71337858 71337870 -72448585 + L1ME LINE L1 5785 5797 -324 230 238 102 75 chr12 71338024 71338171 -72448284 + L1MC/D LINE L1 5735 5885 -1923 2152 111 0 3 chr12 71338294 71338592 -72447863 + AluY SINE Alu 1 297 -14 1331 118 0 0 chr12 71338596 71338782 -72447673 + AluSc SINE Alu 124 309 0 211 378 0 16 chr12 71339662 71339789 -72446666 - L3b LINE CR1 -346 1237 1113 1841 153 0 41 chr12 71340993 71341313 -72445142 - AluJb SINE Alu -5 307 1 717 192 8 8 chr12 71341420 71341545 -72444910 - FLAM_A SINE Alu -8 125 1 2083 143 7 0 chr12 71342607 71342908 -72443547 - AluSx SINE Alu -9 303 1 788 264 98 81 chr12 71343166 71343586 -72442869 + L2 LINE L2 2846 3272 0 21 0 0 0 chr12 71344005 71344026 -72442429 + AT_rich Low_complexity Low_complexity 1 21 0 236 418 0 12 chr12 71344442 71344612 -72441843 + L2 LINE L2 2806 2973 -299 1531 148 39 58 chr12 71344612 71344971 -72441484 + MSTA LTR MaLR 77 428 0 237 295 58 89 chr12 71344971 71345092 -72441363 + L2 LINE L2 2932 3046 -226 2266 107 0 7 chr12 71345092 71345400 -72441055 - AluSg SINE Alu -4 306 1 237 295 58 89 chr12 71345400 71345468 -72440987 + L2 LINE L2 3046 3115 -157 305 324 0 28 chr12 71347502 71347610 -72438845 - MIR SINE MIR -60 148 44 25 51 0 0 chr12 71349041 71349080 -72437375 + AT_rich Low_complexity Low_complexity 1 39 0 1891 161 0 16 chr12 71349332 71349648 -72436807 + AluSx SINE Alu 1 311 -1 32 43 0 0 chr12 71350349 71350395 -72436060 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 71350446 71350468 -72435987 + AT_rich Low_complexity Low_complexity 1 22 0 469 288 106 0 chr12 71351127 71351259 -72435196 - MIR SINE MIR -98 164 19 333 279 288 0 chr12 71351272 71351445 -72435010 + MIR SINE MIR 38 260 -2 188 0 74 0 chr12 71351732 71351759 -72434696 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2418 54 0 17 chr12 71351765 71352063 -72434392 - AluY SINE Alu -18 293 1 471 251 145 11 chr12 71352963 71353142 -72433313 + MIR SINE MIR 59 261 -1 549 295 110 40 chr12 71353282 71353509 -72432946 + MIR SINE MIR 3 245 -17 553 288 171 0 chr12 71353782 71354004 -72432451 - MIR SINE MIR 0 262 3 2948 52 0 5 chr12 71354241 71354609 -72431846 + L1PA8 LINE L1 5795 6160 -12 234 0 0 0 chr12 71354625 71354651 -72431804 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1543 214 60 70 chr12 71355994 71356581 -72429874 + MLT1E2 LTR MaLR 70 624 -2 799 244 87 25 chr12 71357890 71358132 -72428323 + MIR SINE MIR 6 262 0 216 342 179 34 chr12 71358969 71359086 -72427369 + MIR SINE MIR 8 141 -121 180 0 0 0 chr12 71359089 71359109 -72427346 + (TA)n Simple_repeat Simple_repeat 1 20 0 276 53 0 0 chr12 71360450 71360488 -72425967 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2213 100 0 0 chr12 71360488 71360769 -72425686 - AluSx SINE Alu -27 285 5 352 277 0 8 chr12 71360775 71360894 -72425561 + L1ME2 LINE L1 6038 6155 -9 23 0 0 0 chr12 71360915 71360938 -72425517 + AT_rich Low_complexity Low_complexity 1 23 0 1073 270 95 58 chr12 71362300 71363318 -72423137 + L1MEc LINE L1 789 1865 -4531 2170 122 3 0 chr12 71363318 71363613 -72422842 + AluSx SINE Alu 1 296 -16 1073 270 95 58 chr12 71363613 71363883 -72422572 + L1MEc LINE L1 1865 2124 -4272 218 313 12 24 chr12 71365151 71365234 -72421221 + L2 LINE L2 3189 3270 -2 214 260 20 0 chr12 71365357 71365407 -72421048 + (TG)n Simple_repeat Simple_repeat 2 52 0 263 188 27 103 chr12 71365559 71365664 -72420791 + L1MC5 LINE L1 7605 7716 -245 2306 106 3 0 chr12 71365664 71365967 -72420488 - AluSx SINE Alu -6 306 3 263 188 27 103 chr12 71365967 71366108 -72420347 + L1MC5 LINE L1 7716 7901 -60 304 77 0 0 chr12 71366392 71366431 -72420024 + tRNA-Arg-AGA tRNA tRNA 1 39 -37 2331 95 0 0 chr12 71367461 71367757 -72418698 - AluSx SINE Alu -16 296 1 2464 175 55 89 chr12 71368029 71368745 -72417710 - LTR8 LTR ERV1 0 691 1 260 286 232 9 chr12 71368769 71368881 -72417574 + MIR SINE MIR 8 144 -118 378 224 122 13 chr12 71371030 71371186 -72415269 + LTR33A LTR ERVL 344 516 -7 383 245 117 88 chr12 71371288 71371811 -72414644 + MER34 LTR ERV1 5 542 0 778 190 51 46 chr12 71371928 71372123 -72414332 - MER21B LTR ERV1 -108 755 560 2701 154 17 19 chr12 71372144 71372662 -72413793 + MER101B LTR ERV1 54 570 0 2092 229 43 4 chr12 71372675 71373159 -72413296 - MER21B LTR ERV1 -342 521 19 516 147 0 53 chr12 71373184 71373279 -72413176 - MER21B LTR ERV1 -773 90 1 222 195 0 0 chr12 71373496 71373537 -72412918 + CT-rich Low_complexity Low_complexity 2 42 0 1648 204 55 53 chr12 71373633 71374178 -72412277 - MER34C LTR ERV1 0 585 40 1408 141 47 44 chr12 71374676 71374949 -72411506 + MER33 DNA MER1_type 1 277 -2308 1404 238 17 14 chr12 71374949 71375243 -72411212 + AluJo SINE Alu 1 295 -17 1408 141 47 44 chr12 71375243 71375288 -72411167 + MER33 DNA MER1_type 277 320 -4 186 43 0 0 chr12 71375489 71375512 -72410943 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 2499 164 15 4 chr12 71375940 71376396 -72410059 + MLT1C LTR MaLR 7 467 0 211 300 89 22 chr12 71376487 71376577 -72409878 + L2 LINE L2 3123 3218 -54 2286 92 3 0 chr12 71376762 71377054 -72409401 + AluY SINE Alu 1 293 -18 638 299 72 0 chr12 71377325 71377532 -72408923 - MIR SINE MIR -1 261 40 1102 70 0 0 chr12 71378135 71378278 -72408177 + L1PA6 LINE L1 5999 6141 -13 207 0 0 0 chr12 71378515 71378538 -72407917 + (T)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr12 71379083 71379107 -72407348 + (A)n Simple_repeat Simple_repeat 1 24 0 2040 117 35 0 chr12 71381016 71381299 -72405156 + AluSg SINE Alu 1 293 -17 224 366 82 66 chr12 71381413 71381837 -72404618 + L2 LINE L2 2840 3270 -2 1697 140 198 8 chr12 71382060 71382418 -72404037 - MSTA LTR MaLR -2 426 1 1129 209 62 25 chr12 71382537 71382895 -72403560 - MER114 LTR ERV -2 646 276 621 199 126 21 chr12 71383678 71383869 -72402586 - MER114 LTR ERV -393 255 45 206 85 0 85 chr12 71384161 71384220 -72402235 + (TTTTTA)n Simple_repeat Simple_repeat 1 54 0 296 327 10 0 chr12 71384663 71384764 -72401691 - L2 LINE L2 -547 2767 2666 358 161 11 86 chr12 71385194 71385287 -72401168 - MIR SINE MIR 0 262 177 758 260 106 4 chr12 71385674 71385920 -72400535 + L2 LINE L2 2474 2744 -570 2028 178 69 48 chr12 71385920 71386297 -72400158 + MLT1D LTR MaLR 1 392 -113 2301 163 60 16 chr12 71386297 71386744 -72399711 + MLT1C LTR MaLR 1 467 0 2028 178 69 48 chr12 71386744 71386861 -72399594 + MLT1D LTR MaLR 392 505 0 468 236 64 32 chr12 71386870 71386902 -72399553 + L2 LINE L2 2749 2779 -535 2214 111 140 11 chr12 71386902 71387281 -72399174 + MSTA LTR MaLR 1 428 0 468 236 64 32 chr12 71387281 71387405 -72399050 + L2 LINE L2 2779 2910 -404 1403 151 15 12 chr12 71387405 71387664 -72398791 + THE1A LTR MaLR 1 260 -95 1617 134 11 18 chr12 71387684 71387968 -72398487 - MSTA-int LTR MaLR -1369 282 1 1940 138 165 8 chr12 71387968 71388338 -72398117 - MSTA LTR MaLR 0 428 1 289 286 0 44 chr12 71388348 71388439 -72398016 + L2 LINE L2 3227 3313 0 3098 35 3 0 chr12 71389877 71390248 -72396207 + L1PA5 LINE L1 5782 6153 -1 1930 154 3 3 chr12 71390558 71390843 -72395612 + AluJo SINE Alu 2 286 -26 554 290 149 5 chr12 71390888 71391102 -72395353 + MIR SINE MIR 10 254 -8 2484 199 62 68 chr12 71391417 71392075 -72394380 - MLT1E1 LTR MaLR 0 654 1 21 0 0 0 chr12 71392136 71392157 -72394298 + AT_rich Low_complexity Low_complexity 1 21 0 446 299 107 62 chr12 71392184 71392538 -72393917 + HAL1 LINE L1 1 370 -2137 2661 158 43 12 chr12 71392554 71393112 -72393343 + L1MA9 LINE L1 3196 3770 -2376 * 4498 158 55 62 chr12 71393106 71393689 -72392766 + L1MA9 LINE L1 5170 5745 -567 5256 75 13 9 chr12 71393689 71394382 -72392073 + SVA Other Other 691 1386 0 4498 158 55 62 chr12 71394382 71394937 -72391518 + L1MA9 LINE L1 5745 6302 -10 291 180 0 112 chr12 71394954 71395043 -72391412 + LTR48B LTR ERV1 388 466 -178 * 380 153 0 0 chr12 71395041 71395100 -72391355 + MER39B LTR ERV1 595 653 0 13209 154 46 48 chr12 71395238 71397091 -72389364 + L1MA4A LINE L1 1215 3071 -3934 2231 104 51 28 chr12 71397091 71397445 -72389010 + THE1B LTR MaLR 3 364 0 13209 154 46 48 chr12 71397445 71398986 -72387469 + L1MA4A LINE L1 3071 4614 -2391 2111 136 0 0 chr12 71398986 71399280 -72387175 + AluSg SINE Alu 1 294 -16 13209 154 46 48 chr12 71399280 71399453 -72387002 + L1MA4A LINE L1 4614 4786 -2219 1898 156 3 3 chr12 71399453 71399741 -72386714 + AluSx SINE Alu 1 288 -24 13209 154 46 48 chr12 71399741 71400441 -72386014 + L1MA4A LINE L1 4786 5486 -1519 2336 94 17 6 chr12 71400441 71400793 -72385662 + L1MA2 LINE L1 5948 6303 -1 13209 154 46 48 chr12 71400793 71402312 -72384143 + L1MA4A LINE L1 5486 7001 -4 2111 122 0 13 chr12 71402410 71402714 -72383741 + AluSx SINE Alu 1 300 -12 1779 166 3 35 chr12 71403225 71403539 -72382916 + AluSx SINE Alu 1 304 -8 186 43 0 0 chr12 71404069 71404092 -72382363 + (TA)n Simple_repeat Simple_repeat 2 24 0 852 143 0 0 chr12 71404412 71404545 -72381910 + FLAM_C SINE Alu 1 133 0 25 65 0 0 chr12 71404583 71404629 -72381826 + AT_rich Low_complexity Low_complexity 1 46 0 1911 167 3 3 chr12 71404682 71404988 -72381467 + AluSx SINE Alu 7 312 0 1063 42 5 58 chr12 71404993 71405183 -72381272 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 24 0 0 0 chr12 71405538 71405562 -72380893 + AT_rich Low_complexity Low_complexity 1 24 0 3036 163 25 19 chr12 71405586 71406175 -72380280 + L1PA16 LINE L1 5574 6166 0 543 277 91 13 chr12 71406235 71406466 -72379989 + L1MC4a LINE L1 5685 5933 -1875 2382 95 0 0 chr12 71406559 71406863 -72379592 - AluSx SINE Alu -8 304 1 2889 254 95 35 chr12 71407084 71408205 -72378250 - L2 LINE L2 0 3313 2133 404 258 0 53 chr12 71408241 71408373 -72378082 + L1ME3A LINE L1 6035 6159 -11 2505 62 3 7 chr12 71408535 71408843 -72377612 - AluY SINE Alu -4 307 1 353 141 218 0 chr12 71409674 71409752 -72376703 - L1PA13 LINE L1 -5 6158 6064 * 14585 161 30 11 chr12 71409733 71412930 -72373525 - L1PA12 LINE L1 -4040 3544 11 23 33 0 0 chr12 71413439 71413469 -72372986 + AT_rich Low_complexity Low_complexity 1 30 0 3921 156 82 14 chr12 71413483 71414216 -72372239 - LTR39 LTR ERV1 0 783 1 4377 105 9 3 chr12 71414332 71414968 -72371487 + MER51C LTR ERV1 1 640 0 353 265 118 0 chr12 71414970 71415072 -72371383 - MIR SINE MIR -148 114 1 300 260 104 0 chr12 71415156 71415252 -72371203 + HAL1 LINE L1 55 160 -2347 223 311 94 38 chr12 71415626 71415732 -72370723 - L2 LINE L2 -220 3052 2941 659 241 69 0 chr12 71415977 71416151 -72370304 + MER5A DNA MER1_type 3 188 -1 691 218 128 5 chr12 71416567 71416755 -72369700 - MIR SINE MIR 0 262 52 1551 153 0 37 chr12 71416795 71417063 -72369392 - AluSx SINE Alu -22 290 33 436 283 178 11 chr12 71417104 71417295 -72369160 - L2 LINE L2 -855 2459 2237 2253 94 3 13 chr12 71417303 71417611 -72368844 + AluSx SINE Alu 1 305 -7 1394 212 20 3 chr12 71417652 71417944 -72368511 + AluJo SINE Alu 1 297 -15 751 135 23 23 chr12 71418083 71418216 -72368239 - FLAM_C SINE Alu 0 133 1 2324 84 10 0 chr12 71419614 71419912 -72366543 - AluY SINE Alu -10 301 1 213 39 0 0 chr12 71420327 71420353 -72366102 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 468 306 53 29 chr12 71423568 71423738 -72362717 - MER5B DNA MER1_type -1 177 4 408 292 134 28 chr12 71425847 71426063 -72360392 + MIR SINE MIR 24 262 0 226 373 169 30 chr12 71426165 71426401 -72360054 + L3 LINE CR1 186 454 -1123 369 363 46 30 chr12 71426409 71426671 -72359784 + L3 LINE CR1 413 678 -899 2467 87 0 0 chr12 71430793 71431102 -72355353 + AluSc SINE Alu 1 309 0 275 298 158 9 chr12 71431784 71431898 -72354557 + MIR SINE MIR 120 250 -12 468 332 37 50 chr12 71431979 71432214 -72354241 - MIR SINE MIR -7 255 16 543 257 117 28 chr12 71434276 71434490 -72351965 - L2 LINE L2 -1 3312 3080 * 1403 248 236 16 chr12 71434488 71435161 -72351294 - L2 LINE L2 -814 2500 1680 237 291 91 18 chr12 71435783 71435893 -72350562 - L1ME LINE L1 -294 5827 5710 196 123 0 53 chr12 71435989 71436046 -72350409 + (CAT)n Simple_repeat Simple_repeat 2 55 0 236 102 0 85 chr12 71437960 71437985 -72348470 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 -27 1818 152 29 0 chr12 71437985 71438261 -72348194 + AluJb SINE Alu 3 286 -26 236 102 0 85 chr12 71438261 71438294 -72348161 + (CAAAAA)n Simple_repeat Simple_repeat 28 55 0 2082 139 0 0 chr12 71438347 71438650 -72347805 + AluSx SINE Alu 2 304 -8 21 57 0 0 chr12 71439664 71439699 -72346756 + AT_rich Low_complexity Low_complexity 1 35 0 185 243 0 0 chr12 71440704 71440741 -72345714 + L3 LINE CR1 1540 1576 -1 22 0 0 0 chr12 71440923 71440945 -72345510 + AT_rich Low_complexity Low_complexity 1 22 0 376 337 96 16 chr12 71441081 71441268 -72345187 + MIR SINE MIR 49 250 -12 2459 84 3 0 chr12 71441297 71441608 -72344847 - AluSp SINE Alu -1 312 1 750 194 16 0 chr12 71442759 71442888 -72343567 - FLAM_A SINE Alu -2 131 1 1865 120 21 18 chr12 71442913 71443196 -72343259 + AluSx SINE Alu 1 284 -28 1413 119 49 88 chr12 71443299 71443627 -72342828 + MER46B DNA MER2_type 47 236 0 2081 165 6 0 chr12 71443990 71444324 -72342131 - MER1B DNA MER1_type 0 337 2 1965 150 3 3 chr12 71444558 71444852 -72341603 - AluSx SINE Alu -18 294 1 1545 171 44 11 chr12 71445412 71445686 -72340769 + AluJb SINE Alu 12 294 -18 1179 156 0 0 chr12 71445696 71445876 -72340579 + AluSp SINE Alu 132 311 -2 490 259 57 43 chr12 71445913 71446195 -72340260 + L1ME2 LINE L1 2176 2461 -3685 413 195 31 62 chr12 71446200 71446328 -72340127 + MER31B LTR ERV1 1 124 -342 * 912 200 28 19 chr12 71446315 71446530 -72339925 + MER31B LTR ERV1 250 466 0 1192 217 127 43 chr12 71446536 71446656 -72339799 + L1ME2 LINE L1 2469 2578 -3568 1816 144 31 0 chr12 71446656 71446947 -72339508 + AluSx SINE Alu 1 300 -12 1192 217 127 43 chr12 71446947 71447355 -72339100 + L1ME2 LINE L1 2578 3041 -3105 359 279 85 42 chr12 71447365 71447530 -72338925 + L1ME2 LINE L1 3141 3312 -2834 515 259 18 40 chr12 71447590 71447814 -72338641 + L1ME2 LINE L1 4510 4728 -1418 679 167 210 48 chr12 71447839 71448025 -72338430 + MER20 DNA MER1_type 4 219 0 1050 203 53 74 chr12 71448043 71448461 -72337994 + L1ME2 LINE L1 4769 5177 -969 1509 226 143 17 chr12 71448475 71448770 -72337685 + L1ME2 LINE L1 5330 5586 -578 2228 92 0 10 chr12 71448770 71449084 -72337371 + AluY SINE Alu 1 311 0 1509 226 143 17 chr12 71449084 71449392 -72337063 + L1ME2 LINE L1 5586 6002 -162 319 327 59 39 chr12 71449578 71449832 -72336623 - L1M4 LINE L1 -1431 4715 4457 242 194 0 45 chr12 71450314 71450469 -72335986 + (TG)n Simple_repeat Simple_repeat 2 149 0 2169 109 3 0 chr12 71451564 71451858 -72334597 - AluSx SINE Alu -13 299 5 659 141 13 2 chr12 71452472 71452717 -72333738 + AluJ SINE Alu 1 294 -18 22 80 0 0 chr12 71453259 71453309 -72333146 + AT_rich Low_complexity Low_complexity 1 50 0 1388 104 0 5 chr12 71453808 71454000 -72332455 - AluSx SINE Alu -5 307 117 55 29 0 0 chr12 71454010 71454079 -72332376 + AT_rich Low_complexity Low_complexity 1 69 0 747 145 81 0 chr12 71454081 71454205 -72332250 - AluSx SINE Alu -179 134 1 269 56 0 0 chr12 71454916 71454952 -72331503 - MADE1 DNA Mariner -44 36 1 22 35 0 0 chr12 71455961 71455990 -72330465 + AT_rich Low_complexity Low_complexity 1 29 0 359 340 0 10 chr12 71456132 71456235 -72330220 - L2 LINE L2 -22 3250 3149 2117 119 3 3 chr12 71456345 71456638 -72329817 + AluSx SINE Alu 1 293 -19 1766 130 23 68 chr12 71456716 71457023 -72329432 + AluSg SINE Alu 1 293 -17 419 275 65 107 chr12 71457045 71457354 -72329101 - L2 LINE L2 -465 2849 2554 2503 239 58 2 chr12 71457364 71457982 -72328473 - MER82 DNA MER2_type 0 653 1 956 252 95 10 chr12 71458333 71458782 -72327673 + MER90 LTR ERV1 1 527 -48 194 225 0 56 chr12 71458973 71459044 -72327411 + L3 LINE CR1 1329 1395 -182 201 269 141 13 chr12 71459299 71459377 -72327078 - L2 LINE L2 0 3272 3185 2166 111 10 0 chr12 71459622 71459919 -72326536 - AluSx SINE Alu -12 300 1 227 105 53 0 chr12 71460283 71460321 -72326134 + MIR3 SINE MIR 161 200 -8 384 265 109 22 chr12 71461083 71461254 -72325201 + MIR3 SINE MIR 2 187 -68 1883 151 23 10 chr12 71461387 71461692 -72324763 + AluJb SINE Alu 1 309 -3 1920 115 17 3 chr12 71462176 71462463 -72323992 + AluSc SINE Alu 5 295 -14 182 333 97 53 chr12 71462797 71462911 -72323544 - MIR SINE MIR -72 136 18 195 42 0 0 chr12 71464363 71464387 -72322068 + (T)n Simple_repeat Simple_repeat 1 24 0 489 34 0 0 chr12 71465484 71465543 -72320912 + (CCG)n Simple_repeat Simple_repeat 2 60 0 2152 92 7 0 chr12 71467282 71467564 -72318891 + AluSg SINE Alu 1 284 -26 243 0 0 0 chr12 71467736 71467763 -72318692 + (CA)n Simple_repeat Simple_repeat 2 28 0 353 293 88 14 chr12 71467927 71468074 -72318381 + MIR SINE MIR 32 189 -73 562 101 0 0 chr12 71468074 71468153 -72318302 - AluS SINE Alu -233 79 1 352 77 0 19 chr12 71468155 71468207 -72318248 + AluSc SINE Alu 91 141 -158 180 241 0 0 chr12 71468422 71468480 -72317975 + GA-rich Low_complexity Low_complexity 2 59 0 2146 117 7 3 chr12 71469628 71469927 -72316528 + AluSq SINE Alu 1 300 -13 1788 162 0 23 chr12 71471189 71471492 -72314963 - AluJb SINE Alu -16 296 1 372 183 0 58 chr12 71471815 71471919 -72314536 - LTR38B LTR ERV1 -509 101 4 253 234 16 0 chr12 71472400 71472464 -72313991 - MER49 LTR ERV1 -171 752 688 364 214 111 0 chr12 71472509 71472626 -72313829 - LTR38B-int LTR ERV1 -214 6117 5988 4250 215 101 38 chr12 71472713 71474157 -72312298 - MER83A-int LTR ERV1 -341 6257 4905 1779 179 0 3 chr12 71474157 71474471 -72311984 + AluJb SINE Alu 1 313 0 4250 215 101 38 chr12 71474471 71475183 -72311272 - MER83A-int LTR ERV1 -1693 4905 4239 326 23 23 0 chr12 71475183 71475226 -72311229 + (TA)n Simple_repeat Simple_repeat 2 45 0 1507 215 3 0 chr12 71475226 71475538 -72310917 - AluSp SINE Alu 0 313 1 4250 215 101 38 chr12 71475538 71475587 -72310868 - MER83A-int LTR ERV1 -2358 4240 3476 21 0 0 0 chr12 71475587 71475608 -72310847 + AT_rich Low_complexity Low_complexity 1 21 0 2150 112 7 0 chr12 71475649 71475935 -72310520 - AluSg SINE Alu -22 288 1 3080 214 64 32 chr12 71475989 71476558 -72309897 - LTR57-int LTR ERVL -3750 1593 980 1820 174 3 3 chr12 71476558 71476852 -72309603 - AluJb SINE Alu -18 294 1 3080 214 64 32 chr12 71476852 71477237 -72309218 - LTR57-int LTR ERVL -4363 980 609 * 3199 148 28 19 chr12 71477170 71477749 -72308706 - MER83A-int LTR ERV1 -2353 1932 1349 830 237 40 32 chr12 71478151 71478429 -72308026 - MER83A-int LTR ERV1 -1412 374 95 2564 27 7 3 chr12 71478745 71479044 -72307411 - AluY SINE Alu -11 300 1 286 259 26 52 chr12 71479447 71479563 -72306892 - LTR38B LTR ERV1 -492 118 6 871 130 0 8 chr12 71479563 71479686 -72306769 - AluJb SINE Alu -190 122 1 1504 191 39 0 chr12 71480474 71480757 -72305698 - AluJo SINE Alu -17 295 2 21 0 0 0 chr12 71480947 71480968 -72305487 + AT_rich Low_complexity Low_complexity 1 21 0 301 289 47 28 chr12 71481300 71481511 -72304944 - HAL1 LINE L1 -1063 1444 1230 748 59 0 10 chr12 71482764 71482865 -72303590 - L1P1 LINE L1 -437 5718 5619 2533 17 0 0 chr12 71482865 71483149 -72303306 + L1PA2 LINE L1 5865 6153 -2 186 43 0 0 chr12 71483163 71483186 -72303269 + (A)n Simple_repeat Simple_repeat 1 23 0 350 220 60 30 chr12 71483377 71483477 -72302978 - MIR SINE MIR -73 135 33 434 382 74 14 chr12 71484701 71484997 -72301458 + L3 LINE CR1 787 1100 -477 565 289 34 61 chr12 71485823 71486028 -72300427 + MIR SINE MIR 2 200 -62 875 209 0 28 chr12 71486028 71486205 -72300250 + FAM SINE Alu 4 175 0 565 289 34 61 chr12 71486205 71486262 -72300193 + MIR SINE MIR 200 257 -5 568 207 9 17 chr12 71487191 71487307 -72299148 - FLAM_C SINE Alu -19 124 10 28 29 0 0 chr12 71487705 71487740 -72298715 + AT_rich Low_complexity Low_complexity 1 35 0 1997 127 35 0 chr12 71487743 71488027 -72298428 + AluSp SINE Alu 1 294 -19 21 0 0 0 chr12 71488851 71488872 -72297583 + AT_rich Low_complexity Low_complexity 1 21 0 2315 89 0 10 chr12 71489396 71489700 -72296755 - AluSx SINE Alu -11 301 1 750 194 16 0 chr12 71490851 71490980 -72295475 - FLAM_A SINE Alu -2 131 1 1852 124 21 18 chr12 71491005 71491288 -72295167 + AluSx SINE Alu 1 284 -28 1515 119 49 88 chr12 71491391 71491719 -72294736 + MER46B DNA MER2_type 47 236 0 2085 162 6 0 chr12 71492082 71492416 -72294039 - MER1B DNA MER1_type 0 337 2 2028 143 3 0 chr12 71492650 71492943 -72293512 - AluSx SINE Alu -18 294 1 1535 171 44 11 chr12 71493503 71493777 -72292678 + AluJb SINE Alu 12 294 -18 1098 153 17 0 chr12 71493787 71493964 -72292491 + AluSp SINE Alu 132 311 -2 552 259 57 43 chr12 71494001 71494283 -72292172 + L1ME2 LINE L1 2176 2461 -3685 1000 199 73 45 chr12 71494288 71494618 -72291837 + MER31B LTR ERV1 1 466 0 1298 221 130 39 chr12 71494624 71494744 -72291711 + L1ME2 LINE L1 2469 2577 -3569 1790 144 31 0 chr12 71494744 71495035 -72291420 + AluSx SINE Alu 1 300 -12 1298 221 130 39 chr12 71495035 71495431 -72291024 + L1ME2 LINE L1 2577 3032 -3114 361 302 77 28 chr12 71495441 71495623 -72290832 + L1ME2 LINE L1 3122 3312 -2834 574 259 18 40 chr12 71495683 71495907 -72290548 + L1ME2 LINE L1 4510 4728 -1418 746 167 210 48 chr12 71495932 71496118 -72290337 + MER20 DNA MER1_type 4 219 0 1162 203 50 74 chr12 71496136 71496555 -72289900 + L1ME2 LINE L1 4769 5177 -969 1633 229 146 17 chr12 71496569 71496863 -72289592 + L1ME2 LINE L1 5330 5585 -579 2178 93 3 10 chr12 71496863 71497176 -72289279 + AluY SINE Alu 1 311 0 1633 229 146 17 chr12 71497176 71497484 -72288971 + L1ME2 LINE L1 5585 6002 -162 304 331 59 39 chr12 71497670 71497924 -72288531 - L1M4 LINE L1 -1431 4715 4457 196 194 0 28 chr12 71498406 71498478 -72287977 + (TG)n Simple_repeat Simple_repeat 2 71 0 2152 109 3 0 chr12 71499573 71499866 -72286589 - AluSx SINE Alu -14 298 5 653 141 13 2 chr12 71500480 71500725 -72285730 + AluJ SINE Alu 1 294 -18 22 80 0 0 chr12 71501267 71501317 -72285138 + AT_rich Low_complexity Low_complexity 1 50 0 1373 104 0 5 chr12 71501816 71502008 -72284447 - AluSx SINE Alu -5 305 115 55 29 0 0 chr12 71502018 71502087 -72284368 + AT_rich Low_complexity Low_complexity 1 69 0 735 145 81 0 chr12 71502089 71502213 -72284242 - AluSx SINE Alu -178 134 1 281 56 0 0 chr12 71502924 71502960 -72283495 - MADE1 DNA Mariner -44 36 1 21 36 0 0 chr12 71503969 71503997 -72282458 + AT_rich Low_complexity Low_complexity 1 28 0 359 340 0 10 chr12 71504139 71504242 -72282213 - L2 LINE L2 -22 3250 3149 2099 119 3 3 chr12 71504352 71504645 -72281810 + AluSx SINE Alu 1 293 -19 1755 130 23 68 chr12 71504723 71505030 -72281425 + AluSg SINE Alu 1 293 -17 472 282 57 111 chr12 71505052 71505371 -72281084 - L2 LINE L2 -465 2849 2557 2577 223 63 7 chr12 71505371 71505989 -72280466 - MER82 DNA MER2_type 0 653 1 472 282 57 111 chr12 71505989 71506091 -72280364 - L2 LINE L2 -757 2557 2451 1058 250 95 10 chr12 71506340 71506789 -72279666 + MER90 LTR ERV1 1 527 -48 192 225 0 56 chr12 71506980 71507051 -72279404 + L3 LINE CR1 1329 1395 -182 200 269 141 13 chr12 71507306 71507384 -72279071 - L2 LINE L2 0 3272 3185 2126 110 10 0 chr12 71507629 71507921 -72278534 - AluSx SINE Alu -11 301 7 226 105 53 0 chr12 71508291 71508329 -72278126 + MIR3 SINE MIR 161 200 -8 383 264 109 22 chr12 71509092 71509263 -72277192 + MIR3 SINE MIR 2 187 -68 1859 151 23 10 chr12 71509396 71509701 -72276754 + AluJb SINE Alu 1 309 -3 1909 120 17 3 chr12 71510185 71510476 -72275979 + AluSc SINE Alu 5 299 -10 186 333 97 53 chr12 71510810 71510924 -72275531 - MIR SINE MIR -72 136 18 222 37 0 0 chr12 71512376 71512403 -72274052 + (T)n Simple_repeat Simple_repeat 1 27 0 219 69 0 0 chr12 71513500 71513529 -72272926 + (CCG)n Simple_repeat Simple_repeat 2 30 0 2153 92 7 0 chr12 71515268 71515550 -72270905 + AluSg SINE Alu 1 284 -26 225 0 0 0 chr12 71515722 71515747 -72270708 + (CA)n Simple_repeat Simple_repeat 2 26 0 550 101 0 0 chr12 71516053 71516132 -72270323 - AluS SINE Alu -234 79 1 371 77 0 19 chr12 71516134 71516186 -72270269 + AluSq/x SINE Alu 93 143 -159 180 241 0 0 chr12 71516401 71516459 -72269996 + GA-rich Low_complexity Low_complexity 2 59 0 2119 117 7 3 chr12 71517602 71517901 -72268554 + AluSq SINE Alu 1 300 -13 1771 164 0 23 chr12 71519134 71519439 -72267016 - AluJb SINE Alu -14 298 1 376 196 58 51 chr12 71519726 71519864 -72266591 - LTR38B LTR ERV1 -468 142 4 259 250 16 0 chr12 71520345 71520409 -72266046 - MER49 LTR ERV1 -171 752 688 432 204 121 19 chr12 71520414 71520571 -72265884 - LTR38B-int LTR ERV1 -171 6160 5988 4659 215 99 41 chr12 71520658 71522102 -72264353 - MER83A-int LTR ERV1 -341 6257 4897 1754 180 0 3 chr12 71522102 71522415 -72264040 + AluJb SINE Alu 1 312 0 4659 215 99 41 chr12 71522415 71523124 -72263331 - MER83A-int LTR ERV1 -1701 4897 4230 326 23 23 0 chr12 71523124 71523167 -72263288 + (TA)n Simple_repeat Simple_repeat 2 45 0 2314 101 3 0 chr12 71523167 71523465 -72262990 - AluSp SINE Alu -14 299 1 4659 215 99 41 chr12 71523465 71523574 -72262881 - MER83A-int LTR ERV1 -2367 4231 3433 2143 108 7 0 chr12 71523576 71523862 -72262593 - AluSg SINE Alu -22 288 1 3275 213 67 33 chr12 71523916 71524481 -72261974 - LTR57-int LTR ERVL -3750 1593 980 1796 174 3 3 chr12 71524481 71524775 -72261680 - AluJb SINE Alu -18 294 1 3275 213 67 33 chr12 71524775 71525161 -72261294 - LTR57-int LTR ERVL -4363 980 609 * 3414 150 26 19 chr12 71525093 71525673 -72260782 - MER83A-int LTR ERV1 -2353 1932 1349 917 241 40 32 chr12 71526075 71526353 -72260102 - MER83A-int LTR ERV1 -1412 374 95 2495 48 7 3 chr12 71526671 71526981 -72259474 - AluY SINE Alu 0 311 1 273 209 0 205 chr12 71527138 71527392 -72259063 - LTR38B LTR ERV1 -376 234 33 * 299 263 44 53 chr12 71527384 71527498 -72258957 - LTR38B LTR ERV1 -492 118 6 859 130 0 8 chr12 71527498 71527621 -72258834 - AluJb SINE Alu -190 122 1 1808 100 74 7 chr12 71528111 71528380 -72258075 - AluSx SINE Alu -24 288 2 749 50 0 10 chr12 71529415 71529514 -72256941 - AluJb SINE Alu -183 129 32 541 211 18 60 chr12 71529544 71529710 -72256745 + L1ME1 LINE L1 5841 5999 -167 589 209 8 0 chr12 71529773 71529907 -72256548 + L1MA10 LINE L1 6196 6330 -4 249 269 51 13 chr12 71530266 71530344 -72256111 + L2 LINE L2 2265 2345 -969 403 264 264 21 chr12 71530355 71530548 -72255907 + MIR SINE MIR 13 252 -10 499 282 35 18 chr12 71530841 71531011 -72255444 + MIR SINE MIR 75 247 -15 1832 127 37 10 chr12 71531059 71531358 -72255097 - AluJb SINE Alu -5 307 1 180 290 26 97 chr12 71531387 71531542 -72254913 - L3 LINE CR1 -584 993 850 275 279 294 15 chr12 71531554 71531690 -72254765 - MER5B DNA MER1_type -2 176 3 232 100 20 20 chr12 71531695 71531745 -72254710 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 400 332 188 54 chr12 71531766 71531879 -72254576 - L3 LINE CR1 -800 777 680 183 42 0 0 chr12 71531879 71531903 -72254552 + (GA)n Simple_repeat Simple_repeat 2 25 0 400 332 188 54 chr12 71531903 71532455 -72254000 - L3 LINE CR1 -897 680 23 1440 203 33 27 chr12 71532963 71533298 -72253157 - MER58B DNA MER1_type 0 341 5 450 0 0 0 chr12 71533525 71533575 -72252880 + (TA)n Simple_repeat Simple_repeat 2 51 0 5297 37 0 0 chr12 71533575 71534199 -72252256 - L1PA5 LINE L1 -15 6139 5516 14791 47 0 0 chr12 71534199 71536110 -72250345 + L1P2 LINE L1 3560 5469 -685 24 32 0 0 chr12 71536455 71536486 -72249969 + AT_rich Low_complexity Low_complexity 1 31 0 1878 138 0 4 chr12 71536530 71536806 -72249649 + AluSx SINE Alu 1 275 -37 22 35 0 0 chr12 71536997 71537026 -72249429 + AT_rich Low_complexity Low_complexity 1 29 0 1174 171 0 32 chr12 71537555 71537772 -72248683 - AluJb SINE Alu -19 293 84 216 0 0 0 chr12 71538375 71538399 -72248056 + (TG)n Simple_repeat Simple_repeat 1 24 0 322 256 0 0 chr12 71538428 71538506 -72247949 + Charlie7 DNA MER1_type 24 101 -2511 277 226 13 71 chr12 71538498 71538653 -72247802 + Charlie7 DNA MER1_type 2462 2607 -5 * 676 197 0 8 chr12 71540560 71540677 -72245778 + FLAM_C SINE Alu 3 118 -15 258 323 21 11 chr12 71540995 71541088 -72245367 + MIR SINE MIR 149 242 -20 244 220 34 0 chr12 71542528 71542587 -72243868 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 * 458 220 213 7 chr12 71542574 71542724 -72243731 + MER112 DNA MER1_type 70 250 -10 227 302 62 31 chr12 71543492 71543588 -72242867 - L2 LINE L2 -12 3301 3203 422 268 64 0 chr12 71543747 71543904 -72242551 - L1ME3A LINE L1 -15 6138 5972 714 251 100 53 chr12 71544095 71544871 -72241584 - L1ME3A LINE L1 -208 5945 5118 334 309 33 0 chr12 71544901 71545053 -72241402 - L1ME3A LINE L1 -1221 4908 4752 * 524 269 104 16 chr12 71545051 71545493 -72240962 - L1ME3A LINE L1 -3533 2596 2116 2281 162 38 24 chr12 71545523 71545948 -72240507 - MSTB1 LTR MaLR -1 431 1 310 227 114 45 chr12 71545948 71546080 -72240375 + LTR41 LTR ERVL 22 162 -611 679 244 83 75 chr12 71546095 71546444 -72240011 + LTR41 LTR ERVL 409 760 -13 2264 104 0 3 chr12 71546748 71547045 -72239410 + AluSx SINE Alu 1 296 -16 580 313 57 32 chr12 71547137 71548044 -72238411 - L1MEd LINE L1 -4644 1666 689 2605 107 18 10 chr12 71548254 71548648 -72237807 + L1PA14 LINE L1 5765 6161 0 639 252 65 0 chr12 71548677 71548832 -72237623 + MER96 DNA MER1_type? 11 175 0 336 307 49 35 chr12 71548832 71549238 -72237217 - L1MEd LINE L1 -4752 1558 1116 1771 191 18 3 chr12 71549238 71549579 -72236876 - MER7A DNA MER2_type -1 345 2 336 307 49 35 chr12 71549579 71549804 -72236651 - L1MEd LINE L1 -5194 1116 896 786 286 35 4 chr12 71550542 71550769 -72235686 - MIR SINE MIR -21 241 8 34212 65 6 3 chr12 71551513 71557045 -72229410 + L1PA5 LINE L1 604 6154 0 628 289 86 5 chr12 71557615 71557812 -72228643 - MIR SINE MIR -48 214 2 401 297 173 12 chr12 71558097 71558346 -72228109 - L2 LINE L2 -33 3280 2992 356 268 181 22 chr12 71558375 71558513 -72227942 - L2 LINE L2 -613 2701 2542 353 227 76 0 chr12 71558513 71558645 -72227810 - L1M4 LINE L1 -2393 3753 3612 7615 80 12 3 chr12 71558810 71560631 -72225824 + L1PA7 LINE L1 4327 6154 0 434 235 113 47 chr12 71560644 71560857 -72225598 + L1M4 LINE L1 4327 4553 -1593 339 364 6 6 chr12 71561085 71561261 -72225194 + L1M4 LINE L1 4971 5146 -1000 1592 197 14 0 chr12 71561529 71561818 -72224637 - AluJb SINE Alu -8 304 12 1143 155 5 16 chr12 71561830 71562024 -72224431 - AluJb SINE Alu -3 309 118 2391 71 0 0 chr12 71562053 71562348 -72224107 - AluY SINE Alu -16 295 1 948 164 0 7 chr12 71562348 71562494 -72223961 - AluJo SINE Alu -166 146 2 532 270 101 6 chr12 71562529 71562688 -72223767 - MIR SINE MIR -49 213 40 473 234 98 134 chr12 71562827 71563275 -72223180 - L2 LINE L2 0 3313 2882 452 234 73 16 chr12 71564020 71564144 -72222311 - MER58A DNA MER1_type -15 209 79 309 250 15 0 chr12 71564201 71564269 -72222186 - MER58A DNA MER1_type -36 71 3 302 279 77 77 chr12 71565543 71565751 -72220704 + MLT2E LTR ERVL 1 208 -420 440 304 112 36 chr12 71566241 71566544 -72219911 + L1MEd LINE L1 323 648 -5471 594 274 205 5 chr12 71567376 71567591 -72218864 - MIR SINE MIR 0 262 5 2441 144 61 14 chr12 71568203 71568646 -72217809 + MLT1C LTR MaLR 1 464 -3 413 297 39 32 chr12 71568742 71568897 -72217558 - MIR SINE MIR -50 212 57 588 190 15 7 chr12 71569173 71569310 -72217145 - MER103 DNA DNA -22 144 7 1311 169 92 32 chr12 71569593 71569907 -72216548 + MER2 DNA MER2_type 7 339 -6 21 0 0 0 chr12 71570171 71570192 -72216263 + AT_rich Low_complexity Low_complexity 1 21 0 657 171 41 35 chr12 71570745 71570915 -72215540 - MLT1A2 LTR MaLR 0 374 204 2894 164 23 4 chr12 71571122 71571654 -72214801 + L1MB1 LINE L1 5611 6152 -16 25 0 0 0 chr12 71571658 71571683 -72214772 + AT_rich Low_complexity Low_complexity 1 25 0 394 242 30 42 chr12 71571826 71571991 -72214464 + MLT1A2 LTR MaLR 5 167 -207 1055 260 65 59 chr12 71572404 71572825 -72213630 - L1ME3A LINE L1 -309 5861 5444 2232 113 0 3 chr12 71572825 71573134 -72213321 - AluSx SINE Alu -4 308 1 1055 260 65 59 chr12 71573134 71573841 -72212614 - L1ME3A LINE L1 -726 5444 4737 1145 227 64 14 chr12 71573892 71574187 -72212268 + MLT1H LTR MaLR 45 354 -195 2332 103 0 0 chr12 71574275 71574576 -72211879 + AluSc SINE Alu 1 301 -8 219 309 72 31 chr12 71575255 71575352 -72211103 - L2 LINE L2 -3 3269 3169 271 312 114 36 chr12 71575363 71575565 -72210890 - L2 LINE L2 -263 3009 2794 237 250 12 62 chr12 71576545 71576625 -72209830 + MLT1K LTR MaLR 3 78 -510 335 23 23 0 chr12 71577836 71577880 -72208575 + (CA)n Simple_repeat Simple_repeat 1 45 0 795 233 102 40 chr12 71578642 71579042 -72207413 + LTR37A LTR ERV1 2 426 0 308 326 45 23 chr12 71579043 71579175 -72207280 - MIR SINE MIR -108 154 20 197 234 21 21 chr12 71579182 71579229 -72207226 - L2 LINE L2 -23 3249 3203 200 214 18 0 chr12 71579838 71579894 -72206561 + CT-rich Low_complexity Low_complexity 2 58 0 302 0 26 0 chr12 71579895 71579933 -72206522 + (CA)n Simple_repeat Simple_repeat 1 39 0 713 216 31 84 chr12 71581362 71581377 -72205078 - MIR SINE MIR -29 233 219 2311 114 0 0 chr12 71581377 71581676 -72204779 - AluSx SINE Alu -9 303 5 713 216 31 84 chr12 71581676 71581887 -72204568 - MIR SINE MIR -43 219 19 477 252 25 17 chr12 71581916 71582035 -72204420 - MER5B DNA MER1_type -5 173 54 190 130 0 43 chr12 71582046 71582092 -72204363 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2085 77 8 0 chr12 71583221 71583481 -72202974 + AluSc SINE Alu 41 302 -7 378 322 7 21 chr12 71584044 71584187 -72202268 - MIR SINE MIR -111 151 11 269 343 206 16 chr12 71585710 71586016 -72200439 + L2 LINE L2 2935 3298 -15 603 236 0 8 chr12 71586040 71586163 -72200292 - MIR SINE MIR -20 242 121 2224 282 91 30 chr12 71586891 71587511 -72198944 + L2 LINE L2 2014 2595 -718 1720 159 42 12 chr12 71587511 71587845 -72198610 - MER2 DNA MER2_type 0 344 1 2224 282 91 30 chr12 71587845 71588433 -72198022 + L2 LINE L2 2595 3290 -23 582 272 129 15 chr12 71589503 71589705 -72196750 + MIR SINE MIR 2 226 -36 614 263 44 7 chr12 71589723 71590064 -72196391 - MLT1I LTR MaLR -2 407 1 566 333 30 8 chr12 71591079 71591313 -72195142 + MIR SINE MIR 24 262 0 1264 251 184 46 chr12 71592579 71593232 -72193223 + LTR50 LTR ERVL 1 758 -37 1039 71 0 0 chr12 71593232 71593541 -72192914 + AluY SINE Alu 1 309 0 1264 251 184 46 chr12 71593541 71593583 -72192872 + LTR50 LTR ERVL 758 793 -2 603 276 83 35 chr12 71594257 71594358 -72192097 - MIR SINE MIR -11 251 156 1890 146 72 39 chr12 71594358 71594721 -72191734 + THE1C LTR MaLR 1 375 0 603 276 83 35 chr12 71594721 71594847 -72191608 - MIR SINE MIR -106 156 13 180 333 51 17 chr12 71594892 71595009 -72191446 - L2 LINE L2 -3 3310 3190 1025 151 119 32 chr12 71595463 71595526 -72190929 - MIR SINE MIR -21 241 185 2894 96 3 3 chr12 71595526 71595890 -72190565 + THE1B LTR MaLR 1 364 0 1025 151 119 32 chr12 71595890 71596045 -72190410 - MIR SINE MIR -77 185 4 202 304 25 38 chr12 71597050 71597129 -72189326 - MIR SINE MIR -113 95 18 36 23 0 0 chr12 71598529 71598572 -72187883 + AT_rich Low_complexity Low_complexity 1 43 0 388 317 129 43 chr12 71598886 71599082 -72187373 + MIR SINE MIR 1 209 -53 1243 289 19 6 chr12 71600908 71601220 -72185235 - MLT1I LTR MaLR -8 401 86 24 77 0 0 chr12 71601578 71601630 -72184825 + AT_rich Low_complexity Low_complexity 1 52 0 386 271 182 26 chr12 71602054 71602246 -72184209 - MIR SINE MIR -22 240 19 565 202 44 0 chr12 71602335 71602449 -72184006 - MIR SINE MIR -17 245 127 228 387 0 13 chr12 71602667 71602742 -72183713 + L2 LINE L2 3177 3250 -22 415 309 77 56 chr12 71602832 71603065 -72183390 + MIR SINE MIR 14 251 -11 268 286 57 0 chr12 71603144 71603214 -72183241 - L2 LINE L2 -58 3214 3141 2023 188 75 9 chr12 71603943 71604410 -72182045 + L1MB8 LINE L1 5667 6164 -14 761 56 0 9 chr12 71604727 71604835 -72181620 + (TAGA)n Simple_repeat Simple_repeat 1 107 0 1058 240 78 83 chr12 71604836 71605282 -72181173 + L2 LINE L2 2205 2648 -666 2184 116 0 0 chr12 71606534 71606826 -72179629 - AluY SINE Alu -19 292 1 201 362 14 0 chr12 71606863 71606932 -72179523 - MIR SINE MIR -189 73 4 722 299 142 39 chr12 71607440 71608138 -72178317 - L2 LINE L2 0 3313 2524 24191 107 7 34 chr12 71608323 71612887 -72173568 - L1P3 LINE L1 -1908 4553 5 750 177 0 15 chr12 71612956 71613086 -72173369 - FLAM_C SINE Alu -2 141 14 1698 122 4 47 chr12 71613312 71613591 -72172864 + AluSg1 SINE Alu 1 267 -42 2215 130 0 0 chr12 71614440 71614747 -72171708 - AluSq SINE Alu -6 307 1 1768 189 80 20 chr12 71615107 71615456 -72170999 - MLT1A2 LTR MaLR -4 370 1 288 218 0 0 chr12 71615526 71615581 -72170874 + L2 LINE L2 3255 3309 -4 21 57 0 0 chr12 71615756 71615791 -72170664 + AT_rich Low_complexity Low_complexity 1 35 0 295 338 28 14 chr12 71615967 71616109 -72170346 + LTR67 LTR ERVL 101 244 -313 298 237 42 76 chr12 71616144 71616262 -72170193 + LTR67 LTR ERVL 412 525 -32 236 360 103 48 chr12 71616547 71616858 -72169597 + L3 LINE CR1 1164 1491 -86 207 0 0 0 chr12 71616967 71616990 -72169465 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 203 56 56 28 chr12 71617289 71617325 -72169130 + (AATAG)n Simple_repeat Simple_repeat 4 40 0 24 0 0 0 chr12 71618072 71618096 -72168359 + AT_rich Low_complexity Low_complexity 1 24 0 870 267 50 4 chr12 71618123 71618363 -72168092 - MIR SINE MIR -10 252 2 346 290 30 20 chr12 71618587 71618687 -72167768 - MIR SINE MIR -145 117 17 840 256 69 46 chr12 71618795 71619228 -72167227 + HAL1b LINE L1 68 510 -838 458 365 56 6 chr12 71619416 71619739 -72166716 - LTR16C LTR ERVL -2 489 151 1356 199 143 30 chr12 71619808 71620144 -72166311 + MLT1A2 LTR MaLR 1 374 0 1206 264 77 55 chr12 71620336 71620705 -72165750 - L1MC4a LINE L1 -1867 5941 5551 2017 117 38 0 chr12 71620705 71620996 -72165459 - AluSg SINE Alu -8 302 1 1206 264 77 55 chr12 71620996 71621263 -72165192 - L1MC4a LINE L1 -2257 5551 5291 543 229 157 20 chr12 71622729 71622882 -72163573 + MER5A DNA MER1_type 9 182 -7 575 345 84 39 chr12 71623742 71624336 -72162119 + L1 LINE L1 3325 3945 -2201 1787 173 0 14 chr12 71624338 71624633 -72161822 + AluJo SINE Alu 1 291 -21 611 206 36 61 chr12 71624819 71624984 -72161471 - AluJo SINE Alu -89 223 63 1569 163 50 10 chr12 71625090 71625391 -72161064 - THE1C LTR MaLR -2 373 61 1995 189 31 3 chr12 71625531 71625885 -72160570 + MLT1A1 LTR MaLR 2 365 0 609 96 0 75 chr12 71626232 71626326 -72160129 - AluJ/FRAM SINE Alu -10 302 216 21 0 0 0 chr12 71626892 71626913 -72159542 + AT_rich Low_complexity Low_complexity 1 21 0 201 277 0 0 chr12 71627176 71627241 -72159214 + C-rich Low_complexity Low_complexity 6 70 0 293 251 101 14 chr12 71627789 71627996 -72158459 - MLT2B1 LTR ERVL -293 227 3 9357 155 46 4 chr12 71627997 71629563 -72156892 - ERVL-B1 LTR ERVL -6 5758 4127 222 275 138 18 chr12 71629821 71629930 -72156525 + L2 LINE L2 3150 3271 -1 2287 108 7 0 chr12 71630547 71630852 -72155603 + AluSx SINE Alu 1 307 -5 1152 237 138 45 chr12 71632227 71632775 -72153680 - L2 LINE L2 0 3313 2719 1767 165 0 44 chr12 71632785 71633101 -72153354 + AluJo SINE Alu 9 310 -2 1966 125 11 11 chr12 71633122 71633409 -72153046 + AluSx SINE Alu 18 304 -8 1986 149 0 32 chr12 71633471 71633786 -72152669 + AluY SINE Alu 1 305 -6 316 339 0 39 chr12 71633919 71634099 -72152356 + C-rich Low_complexity Low_complexity 2 174 0 304 342 0 34 chr12 71634179 71634328 -72152127 + CT-rich Low_complexity Low_complexity 1 144 0 788 243 90 14 chr12 71635282 71635504 -72150951 - MIR SINE MIR 0 262 24 759 260 129 32 chr12 71636352 71636756 -72149699 + L1MC4a LINE L1 5403 5845 -1963 476 201 85 85 chr12 71636776 71636940 -72149515 - MLT1J LTR MaLR -4 545 382 2235 270 102 4 chr12 71636951 71637713 -72148742 + L2 LINE L2 1414 2250 -1064 478 234 65 150 chr12 71638633 71639034 -72147421 + L2 LINE L2 2946 3312 -1 517 270 101 6 chr12 71639175 71639334 -72147121 + MIR SINE MIR 40 213 -49 936 164 0 7 chr12 71639369 71639515 -72146940 + AluJo SINE Alu 2 146 -166 2341 71 0 0 chr12 71639515 71639824 -72146631 + AluY SINE Alu 1 309 0 207 333 0 23 chr12 71640160 71640289 -72146166 + CT-rich Low_complexity Low_complexity 1 126 0 763 176 24 41 chr12 71641625 71641795 -72144660 + Charlie8 DNA MER1_type 36 202 -2215 21 71 0 0 chr12 71642513 71642555 -72143900 + AT_rich Low_complexity Low_complexity 1 42 0 276 266 25 25 chr12 71642662 71642741 -72143714 + MIR3 SINE MIR 4 82 -126 315 0 0 0 chr12 71642929 71642964 -72143491 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 626 244 67 24 chr12 71643632 71643895 -72142560 - MLT1J LTR MaLR -200 311 1 939 196 96 10 chr12 71644053 71644252 -72142203 + MER20 DNA MER1_type 3 218 -1 3055 172 23 12 chr12 71644764 71645322 -72141133 + L1MB1 LINE L1 5589 6152 -16 24 0 0 0 chr12 71645326 71645350 -72141105 + AT_rich Low_complexity Low_complexity 1 24 0 1567 178 30 103 chr12 71645488 71645887 -72140568 + MLT1A2 LTR MaLR 5 374 0 345 304 130 6 chr12 71647309 71647470 -72138985 - MIR SINE MIR -54 208 28 2292 136 21 0 chr12 71647630 71647960 -72138495 + MER1B DNA MER1_type 1 337 0 428 238 80 33 chr12 71648738 71648889 -72137566 + MIR SINE MIR 7 164 -98 22 35 0 0 chr12 71651313 71651342 -72135113 + AT_rich Low_complexity Low_complexity 1 29 0 34 96 0 0 chr12 71651375 71651479 -72134976 + AT_rich Low_complexity Low_complexity 1 104 0 329 254 115 18 chr12 71651613 71651778 -72134677 - L1ME4a LINE L1 -250 5871 5691 610 322 77 15 chr12 71652735 71653106 -72133349 + L2 LINE L2 2694 3082 -231 2863 230 96 30 chr12 71653158 71653905 -72132550 - MER21B LTR ERV1 -48 815 19 431 237 0 0 chr12 71653930 71654006 -72132449 - MER21B LTR ERV1 -776 87 12 555 270 34 39 chr12 71654045 71654249 -72132206 + L2 LINE L2 3103 3305 -8 2205 110 0 23 chr12 71654270 71654580 -72131875 + AluSq SINE Alu 1 303 -10 216 357 71 0 chr12 71654688 71654786 -72131669 - L2 LINE L2 0 3272 3168 2500 88 0 0 chr12 71654825 71655132 -72131323 + AluSq SINE Alu 1 307 -6 1797 223 16 34 chr12 71655147 71655533 -72130922 + MLT2B1 LTR ERVL 1 379 -141 237 65 0 0 chr12 71655560 71655591 -72130864 + (TC)n Simple_repeat Simple_repeat 2 32 0 242 56 28 0 chr12 71655606 71655642 -72130813 + (TG)n Simple_repeat Simple_repeat 2 38 0 222 37 0 0 chr12 71655697 71655724 -72130731 + (TA)n Simple_repeat Simple_repeat 2 28 0 1540 237 10 40 chr12 71656200 71656580 -72129875 + MLT2B1 LTR ERVL 47 464 -56 242 56 28 0 chr12 71656617 71656653 -72129802 + (TG)n Simple_repeat Simple_repeat 2 38 0 244 135 95 54 chr12 71656670 71656708 -72129747 + MLT2B1 LTR ERVL 439 474 -41 222 37 0 0 chr12 71656708 71656735 -72129720 + (TA)n Simple_repeat Simple_repeat 1 27 0 244 135 95 54 chr12 71656735 71656770 -72129685 + MLT2B1 LTR ERVL 474 515 0 8768 189 74 2 chr12 71656802 71658455 -72128000 + ERVL-B1-B1 LTR ERVL 22 1792 -3972 * 16536 148 40 5 chr12 71658447 71662030 -72124425 + ERVL-B1-B1 LTR ERVL 2014 5758 -6 3387 141 23 25 chr12 71662031 71662550 -72123905 + MLT2B1 LTR ERVL 3 520 0 241 352 29 0 chr12 71662693 71662798 -72123657 - L2 LINE L2 -527 2787 2680 448 263 161 11 chr12 71663702 71663888 -72122567 + MIR SINE MIR 12 225 -37 511 120 13 0 chr12 71664332 71664407 -72122048 + MADE1 DNA Mariner 5 80 0 616 215 31 72 chr12 71664774 71664997 -72121458 - L2 LINE L2 -1 3312 3099 577 202 39 23 chr12 71665088 71665236 -72121219 + FRAM SINE Alu 1 40 0 1939 265 95 41 chr12 71665236 71665921 -72120534 - L2 LINE L2 -281 3032 2296 2190 183 61 7 chr12 71665922 71666332 -72120123 - MSTB1 LTR MaLR 0 432 1 635 198 30 42 chr12 71667084 71667251 -72119204 - Charlie8 DNA MER1_type -2215 202 38 627 291 96 5 chr12 71669091 71669311 -72117144 - MIR SINE MIR 0 262 23 252 0 0 0 chr12 71670173 71670201 -72116254 + (A)n Simple_repeat Simple_repeat 1 28 0 606 283 116 0 chr12 71670920 71671118 -72115337 + MIR SINE MIR 13 233 -29 1081 166 17 0 chr12 71671308 71671489 -72114966 - Tigger3b DNA MER2_type 0 1231 1048 3639 131 9 7 chr12 71671619 71672183 -72114272 - Tigger3b DNA MER2_type 0 1232 668 720 192 0 23 chr12 71672183 71672313 -72114142 + FLAM_A SINE Alu 8 134 -8 394 113 0 0 chr12 71672315 71672377 -72114078 - Tigger3b DNA MER2_type -573 659 598 2097 113 13 13 chr12 71672377 71672679 -72113776 - AluSx SINE Alu -10 302 1 294 261 0 29 chr12 71672712 71672781 -72113674 + L2 LINE L2 3136 3202 -70 406 286 43 21 chr12 71672826 71672966 -72113489 - MIR SINE MIR -10 252 110 1551 129 27 0 chr12 71673684 71673908 -72112547 + MER30 DNA MER1_type 1 230 0 25 0 0 0 chr12 71674064 71674089 -72112366 + AT_rich Low_complexity Low_complexity 1 25 0 355 171 14 14 chr12 71674100 71674170 -72112285 - L1MC5 LINE L1 -71 7890 7821 1635 166 41 10 chr12 71674190 71674485 -72111970 - L1MC2 LINE L1 -1 6343 6040 390 255 49 10 chr12 71674660 71674762 -72111693 - MIR SINE MIR -109 153 48 235 279 286 0 chr12 71676084 71676231 -72110224 - L3 LINE CR1 -133 1444 1256 393 309 72 31 chr12 71676356 71676579 -72109876 - MIR SINE MIR -10 252 21 287 191 48 16 chr12 71676799 71676862 -72109593 - MLT1J2 LTR MaLR -1 449 385 1520 171 53 92 chr12 71676937 71677316 -72109139 + MLT1B LTR MaLR 27 390 0 993 222 91 12 chr12 71677331 71677583 -72108872 - MLT1J2 LTR MaLR -159 291 20 449 197 16 57 chr12 71677690 71677812 -72108643 - L2 LINE L2 -2 3311 3195 388 206 124 0 chr12 71677950 71678047 -72108408 + MER46C DNA MER2_type 3 111 -227 870 184 14 69 chr12 71678824 71679041 -72107414 + MER3 DNA MER1_type 1 205 -4 217 269 0 0 chr12 71679528 71679580 -72106875 + L2 LINE L2 3216 3267 -5 1394 121 33 0 chr12 71680190 71680405 -72106050 + L1MA6 LINE L1 6079 6300 0 2170 125 3 0 chr12 71681006 71681311 -72105144 - AluSg SINE Alu -4 306 1 618 272 111 15 chr12 71682295 71682523 -72103932 + MIR SINE MIR 5 252 -10 300 253 133 24 chr12 71682554 71682637 -72103818 - L2 LINE L2 -45 3227 3136 1993 126 3 13 chr12 71682670 71682971 -72103484 + AluSx SINE Alu 1 298 -14 206 227 0 0 chr12 71683418 71683462 -72102993 + CT-rich Low_complexity Low_complexity 2 45 0 1827 209 3 14 chr12 71684481 71684844 -72101611 - MLT1A2 LTR MaLR -4 370 12 1865 167 0 7 chr12 71685284 71685589 -72100866 + AluJb SINE Alu 2 304 -8 22 0 0 0 chr12 71685625 71685647 -72100808 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 71686239 71686260 -72100195 + AT_rich Low_complexity Low_complexity 1 21 0 601 80 0 80 chr12 71686908 71686996 -72099459 + AluJ/FRAM SINE Alu 216 296 -16 1995 189 31 3 chr12 71687350 71687704 -72098751 - MLT1A1 LTR MaLR 0 365 2 1617 156 50 10 chr12 71687844 71688145 -72098310 + THE1C LTR MaLR 61 373 -2 28 0 0 0 chr12 71688213 71688241 -72098214 + AT_rich Low_complexity Low_complexity 1 28 0 490 241 26 95 chr12 71688250 71688482 -72097973 + AluJo SINE Alu 63 278 -34 428 370 31 6 chr12 71688891 71689053 -72097402 + L2 LINE L2 3102 3267 -5 248 365 0 21 chr12 71689996 71690141 -72096314 + G-rich Low_complexity Low_complexity 3 144 0 270 315 0 18 chr12 71690212 71690323 -72096132 + G-rich Low_complexity Low_complexity 4 112 0 225 167 0 0 chr12 71690451 71690493 -72095962 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 196 308 8 83 chr12 71690678 71690811 -72095644 - L2 LINE L2 -160 3112 2990 497 330 124 16 chr12 71690815 71691130 -72095325 + L2 LINE L2 2924 3272 0 201 278 122 52 chr12 71691969 71692084 -72094371 + L2 LINE L2 3144 3266 -6 252 279 23 23 chr12 71692646 71692732 -72093723 + MIR3 SINE MIR 115 200 -8 808 182 44 0 chr12 71692997 71693156 -72093299 + ORSL DNA AcHobo 1 166 -109 191 36 36 0 chr12 71693158 71693186 -72093269 + (TG)n Simple_repeat Simple_repeat 2 30 0 279 302 23 12 chr12 71693472 71693558 -72092897 - L2 LINE L2 -19 3294 3208 753 240 82 79 chr12 71696656 71696985 -72089470 + MER46C DNA MER2_type 8 337 -1 341 308 58 0 chr12 71697224 71697328 -72089127 - MER81 DNA DNA -4 110 1 940 275 134 32 chr12 71698418 71698946 -72087509 + MLT1L LTR MaLR 34 615 0 256 301 0 14 chr12 71698968 71699041 -72087414 - MIR SINE MIR -113 149 78 1892 163 0 3 chr12 71699053 71699348 -72087107 - AluSx SINE Alu -18 294 1 270 0 0 0 chr12 71700717 71700747 -72085708 + (A)n Simple_repeat Simple_repeat 1 30 0 298 341 80 22 chr12 71701520 71701658 -72084797 - L2 LINE L2 -8 3264 3119 1563 185 27 37 chr12 71702142 71702440 -72084015 + AluJo SINE Alu 4 298 -14 240 223 64 0 chr12 71702440 71702534 -72083921 + GA-rich Low_complexity Low_complexity 1 100 0 719 201 6 0 chr12 71702552 71702716 -72083739 + GA-rich Low_complexity Low_complexity 4 168 0 217 104 83 0 chr12 71702729 71702777 -72083678 + GA-rich Low_complexity Low_complexity 3 54 0 656 138 8 65 chr12 71703024 71703147 -72083308 - MER63 DNA MER1_type -320 742 1 21 0 0 0 chr12 71704002 71704023 -72082432 + AT_rich Low_complexity Low_complexity 1 21 0 442 268 18 0 chr12 71704488 71704600 -72081855 + MER81 DNA DNA 1 114 0 273 233 68 0 chr12 71704780 71704853 -72081602 - MIR SINE MIR -62 146 69 405 184 31 0 chr12 71706323 71706421 -72080034 - Tigger3b DNA MER2_type -464 768 668 650 200 0 23 chr12 71706421 71706551 -72079904 + FLAM_A SINE Alu 8 134 -8 3252 157 71 8 chr12 71706553 71706615 -72079840 - Tigger3b DNA MER2_type -2370 658 601 2067 117 20 7 chr12 71706615 71706913 -72079542 - AluSx SINE Alu -10 302 1 3252 157 71 8 chr12 71706913 71707469 -72078986 - Tigger3b DNA MER2_type -2427 601 1 932 151 55 15 chr12 71707706 71707905 -72078550 - L1PA13 LINE L1 -20 6143 5937 26 30 0 0 chr12 71708024 71708057 -72078398 + GC_rich Low_complexity Low_complexity 1 33 0 2975 134 16 0 chr12 71708105 71708552 -72077903 - L1PA12 LINE L1 -99 6069 5616 722 243 90 14 chr12 71709931 71710153 -72076302 + MIR SINE MIR 24 262 0 219 380 66 0 chr12 71711360 71711497 -72074958 + L2 LINE L2 2914 3059 -213 1465 261 124 11 chr12 71711573 71712041 -72074414 - LTR33 LTR ERVL 0 521 1 2484 70 0 25 chr12 71712209 71712525 -72073930 - AluY SINE Alu -3 308 1 2230 93 11 0 chr12 71712587 71712865 -72073590 - AluSq SINE Alu -15 298 18 1814 160 0 44 chr12 71712883 71713201 -72073254 - AluJo SINE Alu 0 312 9 1048 247 125 40 chr12 71713236 71713760 -72072695 + L2 LINE L2 2749 3313 0 2367 94 3 7 chr12 71714981 71715290 -72071165 - AluSx SINE Alu -4 308 1 734 171 81 0 chr12 71715426 71715549 -72070906 - AluJo SINE Alu -178 134 2 1283 157 7 5 chr12 71715982 71716288 -72070167 - MLT1A1 LTR MaLR 0 365 1 2100 117 13 3 chr12 71716361 71716670 -72069785 + AluSq SINE Alu 1 312 -1 186 43 0 0 chr12 71717562 71717585 -72068870 + (A)n Simple_repeat Simple_repeat 1 23 0 259 192 39 0 chr12 71717927 71717979 -72068476 + MIR SINE MIR 29 82 -126 315 0 0 0 chr12 71718167 71718202 -72068253 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 182 128 0 85 chr12 71719562 71719656 -72066799 + (CGGGGG)n Simple_repeat Simple_repeat 4 89 0 29 0 0 0 chr12 71719682 71719711 -72066744 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr12 71719882 71719913 -72066542 + GC_rich Low_complexity Low_complexity 1 31 0 251 253 20 20 chr12 71719957 71720056 -72066399 + (CGG)n Simple_repeat Simple_repeat 2 100 0 27 62 0 0 chr12 71720235 71720283 -72066172 + GC_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr12 71720491 71720521 -72065934 + GC_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr12 71720907 71720947 -72065508 + GC_rich Low_complexity Low_complexity 1 40 0 364 326 22 15 chr12 71722798 71722933 -72063522 - MIR3 SINE MIR -32 176 41 22 35 0 0 chr12 71723387 71723416 -72063039 + AT_rich Low_complexity Low_complexity 1 29 0 2251 102 0 0 chr12 71723870 71724187 -72062268 - AluSx SINE Alu 0 312 1 204 217 0 0 chr12 71724804 71724850 -72061605 - L2 LINE L2 -1 3312 3267 615 238 26 7 chr12 71725045 71725196 -72061259 - MIR SINE MIR -48 214 61 196 329 98 67 chr12 71725724 71726110 -72060345 - L2 LINE L2 -869 2445 2048 289 241 0 0 chr12 71727691 71727745 -72058710 - L2 LINE L2 -54 3218 3165 247 278 65 46 chr12 71727843 71727951 -72058504 - L2 LINE L2 -1 3312 3203 254 184 105 13 chr12 71735534 71735610 -72050845 - MIR SINE MIR -62 200 118 27 49 0 0 chr12 71736144 71736185 -72050270 + AT_rich Low_complexity Low_complexity 1 41 0 363 318 40 26 chr12 71736590 71736741 -72049714 - L2 LINE L2 -3 3269 3117 380 298 109 30 chr12 71736941 71737206 -72049249 - L2 LINE L2 -413 2901 2616 226 291 0 0 chr12 71737286 71737341 -72049114 + Tigger5 DNA MER2_type 1 55 -2268 472 207 0 0 chr12 71737350 71737437 -72049018 + Tigger5 DNA MER2_type 2237 2323 0 24 32 0 0 chr12 71737678 71737709 -72048746 + AT_rich Low_complexity Low_complexity 1 31 0 195 129 0 0 chr12 71737762 71737793 -72048662 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 217 211 0 0 chr12 71737908 71737946 -72048509 + polypyrimidine Low_complexity Low_complexity 4 41 0 231 36 0 0 chr12 71738727 71738755 -72047700 + (A)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr12 71739139 71739168 -72047287 + AT_rich Low_complexity Low_complexity 1 29 0 526 314 83 28 chr12 71739455 71739862 -72046593 + L1ME LINE L1 5264 5701 -420 262 296 86 70 chr12 71740297 71740668 -72045787 + L2 LINE L2 2896 3272 0 569 284 58 44 chr12 71740932 71741513 -72044942 + L2 LINE L2 2726 3309 -4 540 220 28 102 chr12 71741586 71741763 -72044692 + MER117 DNA MER1_type 1 164 -33 441 0 0 0 chr12 71741934 71741983 -72044472 + (TTC)n Simple_repeat Simple_repeat 2 50 0 2012 148 0 0 chr12 71741983 71742310 -72044145 - AluSx SINE Alu 0 327 1 341 240 0 13 chr12 71743494 71743569 -72042886 + MLT1D LTR MaLR 5 78 -427 618 158 100 0 chr12 71743570 71743690 -72042765 + MLT1B LTR MaLR 1 132 -258 2153 110 78 26 chr12 71743695 71744041 -72042414 - THE1B LTR MaLR 0 364 1 12088 73 13 2 chr12 71744041 71745605 -72040850 - THE1B-int LTR MaLR 0 1580 1 1851 102 171 16 chr12 71745605 71745920 -72040535 - THE1B LTR MaLR 0 364 1 1090 177 11 62 chr12 71745922 71746182 -72040273 + MLT1B LTR MaLR 134 380 -10 261 171 44 69 chr12 71746190 71746309 -72040146 + MLT1D LTR MaLR 71 165 -340 502 312 0 0 chr12 71746315 71746469 -72039986 + MLT1D LTR MaLR 352 505 0 324 0 0 0 chr12 71746876 71746912 -72039543 + (TG)n Simple_repeat Simple_repeat 1 36 0 670 219 35 47 chr12 71748257 71748332 -72038123 - MIR SINE MIR -81 181 107 1962 163 35 22 chr12 71748332 71748701 -72037754 - MLT1A2 LTR MaLR 0 374 1 670 219 35 47 chr12 71748701 71748794 -72037661 - MIR SINE MIR -155 107 15 2386 92 0 0 chr12 71749178 71749471 -72036984 + AluSg SINE Alu 1 293 -17 407 297 129 13 chr12 71749925 71750080 -72036375 - MIR SINE MIR -34 228 56 384 302 8 24 chr12 71750128 71750254 -72036201 - L2 LINE L2 -201 3071 2948 2562 36 10 7 chr12 71750599 71750903 -72035552 - AluY SINE Alu -6 305 1 354 310 180 11 chr12 71752008 71752269 -72034186 + L3 LINE CR1 1111 1415 -162 1107 280 162 30 chr12 71752880 71753847 -72032608 + HAL1 LINE L1 814 1908 -599 821 229 109 9 chr12 71754362 71754572 -72031883 + MIR SINE MIR 2 232 -30 210 71 0 0 chr12 71754602 71754630 -72031825 + (ATG)n Simple_repeat Simple_repeat 1 28 0 1555 150 4 0 chr12 71754644 71754917 -72031538 + L1MA8 LINE L1 5508 5781 -510 1627 120 32 7 chr12 71754917 71755199 -72031256 + L1MA8 LINE L1 5988 6278 -13 22 35 0 0 chr12 71755297 71755326 -72031129 + AT_rich Low_complexity Low_complexity 1 29 0 5952 236 59 20 chr12 71755485 71756895 -72029560 - L1ME1 LINE L1 -4 6162 4808 2166 116 17 0 chr12 71756895 71757070 -72029385 - AluSx SINE Alu -5 307 123 405 0 0 0 chr12 71757070 71757115 -72029340 + (TG)n Simple_repeat Simple_repeat 2 46 0 2166 116 17 0 chr12 71757115 71757241 -72029214 - AluSx SINE Alu -189 123 1 5952 236 59 20 chr12 71757241 71758488 -72027967 - L1ME1 LINE L1 -1358 4808 3401 5921 95 22 0 chr12 71758488 71759382 -72027073 + L1MA2 LINE L1 5387 6300 -4 2534 226 34 71 chr12 71759467 71760584 -72025871 - L1ME1 LINE L1 -2775 3371 2296 1277 209 48 81 chr12 71760591 71760984 -72025471 - MLT1B LTR MaLR -10 380 1 321 246 18 9 chr12 71760984 71761098 -72025357 - L1ME1 LINE L1 -3843 2303 2189 216 0 0 0 chr12 71761617 71761641 -72024814 + (A)n Simple_repeat Simple_repeat 1 24 0 206 248 209 48 chr12 71762115 71762220 -72024235 - L2 LINE L2 0 3272 3151 354 339 47 6 chr12 71763707 71763878 -72022577 - MIR SINE MIR -6 256 79 484 375 56 12 chr12 71763946 71764269 -72022186 - L2 LINE L2 -56 3257 2921 692 328 111 46 chr12 71764291 71764861 -72021594 + L1M4 LINE L1 3714 4320 -1826 1047 124 40 27 chr12 71764876 71765107 -72021348 - L1P LINE L1 -746 5408 5183 2747 103 47 43 chr12 71765107 71765621 -72020834 + L1MA8 LINE L1 5771 6286 -5 21 0 0 0 chr12 71765627 71765648 -72020807 + AT_rich Low_complexity Low_complexity 1 21 0 11869 20 1 2 chr12 71765657 71767824 -72018631 - L1PA3 LINE L1 -1 6154 3986 625 324 8 40 chr12 71768388 71768635 -72017820 - MIR SINE MIR -1 261 23 273 283 97 0 chr12 71768695 71768808 -72017647 - MIR SINE MIR -48 214 91 1938 149 0 0 chr12 71768841 71769149 -72017306 - AluSx SINE Alu 0 308 1 478 240 47 16 chr12 71769161 71769290 -72017165 + MER94 DNA DNA 1 133 -1 256 322 42 49 chr12 71769718 71769861 -72016594 + MER5B DNA MER1_type 12 153 -25 180 77 0 0 chr12 71770181 71770207 -72016248 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1830 96 0 0 chr12 71770729 71770959 -72015496 + AluSx SINE Alu 1 230 -82 390 171 0 12 chr12 71771060 71771142 -72015313 + MLT1F1 LTR MaLR 487 567 0 187 247 59 94 chr12 71771162 71771247 -72015208 - MIR SINE MIR -104 104 23 2426 142 63 53 chr12 71771311 71771818 -72014637 - MER4E LTR ERV1 -2 777 266 997 241 0 0 chr12 71771864 71772067 -72014388 - MLT1A1 LTR MaLR 0 365 163 29926 107 16 59 chr12 71772094 71778517 -72007938 - L1PA7 LINE L1 -7 6147 12 1662 116 30 4 chr12 71778532 71778799 -72007656 - MER4E LTR ERV1 -505 274 1 306 335 44 37 chr12 71779482 71779754 -72006701 + MLT1J LTR MaLR 235 508 -3 4394 130 65 7 chr12 71780003 71780739 -72005716 - MER4E LTR ERV1 0 779 1 331 267 35 17 chr12 71781193 71781309 -72005146 - MER103 DNA DNA -21 145 28 934 220 0 0 chr12 71781449 71781622 -72004833 - FRAM SINE Alu -3 173 1 234 0 0 0 chr12 71781809 71781835 -72004620 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 329 289 47 87 chr12 71782406 71782472 -72003983 - L2 LINE L2 -4 3268 3201 820 230 145 69 chr12 71782472 71783025 -72003430 + MLT1G1 LTR MaLR 1 595 0 329 289 47 87 chr12 71783025 71783107 -72003348 - L2 LINE L2 -71 3201 3126 2168 86 24 3 chr12 71783187 71783478 -72002977 - AluY SINE Alu -14 297 1 22 0 0 0 chr12 71783762 71783784 -72002671 + AT_rich Low_complexity Low_complexity 1 22 0 202 242 101 81 chr12 71783801 71783950 -72002505 - L2 LINE L2 -2 3311 3160 2198 116 0 0 chr12 71784110 71784395 -72002060 + AluSg SINE Alu 1 285 -25 195 100 0 0 chr12 71784395 71784425 -72002030 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 1272 167 54 8 chr12 71784459 71784717 -72001738 + MSTA LTR MaLR 159 428 0 3128 223 55 8 chr12 71784747 71785495 -72000960 + MER21-int LTR ERV1 877 1659 -2532 2370 96 0 0 chr12 71785495 71785798 -72000657 + AluSg SINE Alu 1 303 -7 515 273 36 67 chr12 71785856 71786050 -72000405 - MIR SINE MIR -73 189 2 769 269 83 0 chr12 71786809 71787025 -71999430 + MIR SINE MIR 8 241 -21 429 340 155 10 chr12 71787047 71787435 -71999020 + L2 LINE L2 2230 2673 -641 25 0 0 0 chr12 71787816 71787841 -71998614 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr12 71788702 71788731 -71997724 + AT_rich Low_complexity Low_complexity 1 29 0 196 350 0 0 chr12 71789359 71789419 -71997036 - L3b LINE CR1 -328 1255 1196 265 70 58 35 chr12 71789590 71789676 -71996779 + (TA)n Simple_repeat Simple_repeat 1 88 0 303 300 0 0 chr12 71789691 71789781 -71996674 - L1MC4 LINE L1 -1339 6703 6614 * 329 292 0 0 chr12 71789729 71789818 -71996637 + L1MC4 LINE L1 6614 6702 -1340 221 280 217 28 chr12 71790593 71790736 -71995719 + MIR3 SINE MIR 4 173 -35 727 296 28 12 chr12 71791278 71791528 -71994927 - MIR SINE MIR -1 261 8 215 239 68 94 chr12 71791531 71791648 -71994807 - MIR SINE MIR -1 261 148 189 303 0 53 chr12 71792581 71792657 -71993798 + L3b LINE CR1 1212 1283 -300 553 269 77 0 chr12 71792915 71793071 -71993384 - MIR SINE MIR -83 179 12 227 254 60 0 chr12 71793301 71793368 -71993087 - L3 LINE CR1 -7 1570 1500 313 211 200 0 chr12 71793385 71793475 -71992980 - L2 LINE L2 -6 3307 3200 329 291 159 18 chr12 71794919 71795146 -71991309 + MIR SINE MIR 1 259 -3 671 162 27 9 chr12 71795248 71795359 -71991096 - FLAM_C SINE Alu -17 126 14 2473 28 42 0 chr12 71796895 71797184 -71989271 - AluY SINE Alu -10 301 1 538 302 108 26 chr12 71797202 71797434 -71989021 + MIR SINE MIR 10 260 -2 399 290 183 0 chr12 71797746 71797915 -71988540 - MIR SINE MIR -6 256 57 761 257 30 30 chr12 71798202 71798439 -71988016 + MIR SINE MIR 16 252 -10 694 305 62 4 chr12 71799471 71799697 -71986758 - MIR SINE MIR -14 248 10 569 279 68 48 chr12 71800032 71800473 -71985982 - HAL1 LINE L1 -942 1565 1116 10930 161 25 8 chr12 71800481 71803665 -71982790 - L1MA4 LINE L1 -3 6297 3068 188 361 50 17 chr12 71804431 71804550 -71981905 - L2 LINE L2 -836 2478 2356 2409 88 3 0 chr12 71804762 71805059 -71981396 + AluSp SINE Alu 1 298 -15 1043 279 107 38 chr12 71805569 71805625 -71980830 - L1MEd LINE L1 -2622 3507 3456 1216 221 44 49 chr12 71805625 71805992 -71980463 + MLT1A1 LTR MaLR 1 365 0 1043 279 107 38 chr12 71805992 71806449 -71980006 - L1MEd LINE L1 -2673 3456 3032 957 173 0 58 chr12 71806449 71806622 -71979833 + FRAM SINE Alu 1 163 -3 1043 279 107 38 chr12 71806622 71807060 -71979395 - L1MEd LINE L1 -3097 3032 2626 1776 144 24 17 chr12 71807060 71807352 -71979103 - AluJb SINE Alu -14 298 5 1043 279 107 38 chr12 71807352 71807792 -71978663 - L1MEd LINE L1 -3503 2626 2034 531 268 114 47 chr12 71807894 71808117 -71978338 - L1MEd LINE L1 -4584 1726 1519 2295 80 3 3 chr12 71808117 71808418 -71978037 + AluY SINE Alu 1 301 -10 531 268 114 47 chr12 71808418 71809089 -71977366 - L1MEd LINE L1 -4791 1519 732 395 342 9 9 chr12 71809889 71810003 -71976452 - L2 LINE L2 0 3313 3200 706 237 43 132 chr12 71810098 71810698 -71975757 - LTR67 LTR ERVL -6 551 5 507 297 14 7 chr12 71810840 71810988 -71975467 - MIR SINE MIR -113 149 1 24 32 0 0 chr12 71812012 71812043 -71974412 + AT_rich Low_complexity Low_complexity 1 31 0 567 276 124 4 chr12 71814574 71814799 -71971656 - MLT1H1 LTR MaLR 0 555 304 1285 154 87 47 chr12 71815607 71815860 -71970595 - AluJb SINE Alu -49 263 1 40822 33 23 1 chr12 71815962 71821978 -71964477 + L1PA3 LINE L1 8 6155 0 581 234 89 124 chr12 71822117 71822374 -71964081 - MIR SINE MIR -1 261 14 231 304 59 49 chr12 71822502 71822604 -71963851 - MIR SINE MIR -6 256 154 1124 258 4 0 chr12 71823464 71823697 -71962758 + MIR SINE MIR 2 235 -27 5912 229 65 46 chr12 71824364 71827074 -71959381 + L1MA4 LINE L1 1 2810 -4399 * 14376 174 26 8 chr12 71827070 71831224 -71955231 + L1MA4 LINE L1 3134 7359 -3 569 279 68 48 chr12 71831232 71831673 -71954782 + HAL1 LINE L1 1116 1565 -942 694 305 62 4 chr12 71832008 71832234 -71954221 + MIR SINE MIR 10 248 -14 761 257 30 30 chr12 71833266 71833503 -71952952 - MIR SINE MIR -10 252 16 399 290 183 0 chr12 71833790 71833959 -71952496 + MIR SINE MIR 57 256 -6 553 307 108 22 chr12 71834271 71834502 -71951953 - MIR SINE MIR -2 260 10 2473 28 42 0 chr12 71834520 71834809 -71951646 + AluY SINE Alu 1 301 -10 671 162 27 9 chr12 71836346 71836457 -71949998 + FLAM_C SINE Alu 14 126 -17 329 291 159 18 chr12 71836559 71836786 -71949669 - MIR SINE MIR -3 259 1 313 211 200 0 chr12 71838230 71838320 -71948135 + L2 LINE L2 3200 3307 -6 227 254 60 0 chr12 71838337 71838404 -71948051 + L3 LINE CR1 1500 1570 -7 553 269 77 0 chr12 71838634 71838790 -71947665 + MIR SINE MIR 12 179 -83 213 307 0 40 chr12 71839048 71839123 -71947332 - L3b LINE CR1 -300 1283 1212 215 239 68 94 chr12 71840055 71840172 -71946283 + MIR SINE MIR 148 261 -1 739 292 28 12 chr12 71840175 71840425 -71946030 + MIR SINE MIR 8 261 -1 244 265 218 34 chr12 71840963 71841110 -71945345 - MIR3 SINE MIR -31 177 4 329 292 0 0 chr12 71841886 71841975 -71944480 - L1MC4 LINE L1 -1340 6702 6614 303 300 0 0 chr12 71841923 71842013 -71944442 + L1MC4 LINE L1 6614 6703 -1339 * 265 70 58 35 chr12 71842028 71842114 -71944341 + (TA)n Simple_repeat Simple_repeat 1 88 0 196 350 0 0 chr12 71842285 71842345 -71944110 + L3b LINE CR1 1196 1255 -328 22 35 0 0 chr12 71842973 71843002 -71943453 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 71843863 71843888 -71942567 + AT_rich Low_complexity Low_complexity 1 25 0 429 340 155 10 chr12 71844269 71844657 -71941798 - L2 LINE L2 -641 2673 2230 769 269 83 0 chr12 71844679 71844895 -71941560 - MIR SINE MIR -21 241 8 515 273 36 67 chr12 71845654 71845848 -71940607 + MIR SINE MIR 2 189 -73 2360 98 0 0 chr12 71845906 71846211 -71940244 - AluSx SINE Alu -7 305 1 2188 224 132 10 chr12 71846402 71846433 -71940022 - MLT2F LTR ERVL 0 663 637 441 0 0 0 chr12 71846433 71846482 -71939973 + (TG)n Simple_repeat Simple_repeat 2 50 0 2188 224 132 10 chr12 71846482 71847039 -71939416 - MLT2F LTR ERVL -26 637 3 243 278 120 53 chr12 71847068 71847201 -71939254 - MIR SINE MIR -35 227 86 22 56 0 0 chr12 71847462 71847498 -71938957 + AT_rich Low_complexity Low_complexity 1 36 0 2704 263 82 40 chr12 71847823 71848644 -71937811 + L1ME LINE L1 55 840 -5240 2978 148 86 30 chr12 71848644 71849179 -71937276 + MER34B LTR ERV1 1 565 0 2704 263 82 40 chr12 71849179 71849926 -71936529 + L1ME LINE L1 840 1670 -4410 1905 229 118 30 chr12 71849979 71850501 -71935954 - MER77 LTR ERV1 -3 602 55 415 256 68 83 chr12 71850527 71851142 -71935313 + L1ME LINE L1 1729 2291 -3789 4129 140 33 44 chr12 71851159 71851199 -71935256 + L1MB2 LINE L1 5448 5487 -684 2055 124 7 0 chr12 71851199 71851511 -71934944 + AluSx SINE Alu 1 314 0 4129 140 33 44 chr12 71851511 71851584 -71934871 + L1MB2 LINE L1 5487 5559 -612 2228 114 80 9 chr12 71851584 71851934 -71934521 + THE1C LTR MaLR 1 375 0 4129 140 33 44 chr12 71851934 71852547 -71933908 + L1MB2 LINE L1 5559 6168 -3 2119 251 69 15 chr12 71852553 71853234 -71933221 + L1ME LINE L1 2252 2969 -3111 684 181 3 0 chr12 71853247 71853373 -71933082 + Tigger3(Golem) DNA MER2_type 1 128 -2901 242 125 0 0 chr12 71853353 71853385 -71933070 + Tigger3(Golem) DNA MER2_type 2285 2316 -713 * 3014 113 67 20 chr12 71853385 71853891 -71932564 + Tigger3(Golem) DNA MER2_type 2445 2974 -55 733 254 161 40 chr12 71853950 71854273 -71932182 + MLT1J2 LTR MaLR 85 446 -4 1467 298 63 18 chr12 71855355 71855798 -71930657 + LTR16B LTR ERVL 1 463 -1 2481 66 0 3 chr12 71856772 71857073 -71929382 + AluY SINE Alu 1 300 -11 184 244 73 0 chr12 71857768 71857809 -71928646 - L3 LINE CR1 -94 1483 1440 540 309 26 16 chr12 71858428 71858622 -71927833 - MIR SINE MIR -54 208 13 213 426 0 0 chr12 71859212 71859360 -71927095 + L2 LINE L2 2189 2336 -978 366 286 36 9 chr12 71859490 71859602 -71926853 + L2 LINE L2 3167 3281 -32 229 189 57 0 chr12 71859602 71859655 -71926800 + GA-rich Low_complexity Low_complexity 3 58 0 217 254 17 17 chr12 71859656 71859715 -71926740 + L2 LINE L2 3210 3268 -4 247 177 32 0 chr12 71859737 71859799 -71926656 + GA-rich Low_complexity Low_complexity 4 67 0 2308 105 44 36 chr12 71859919 71860280 -71926175 + THE1B LTR MaLR 1 364 0 300 312 59 96 chr12 71860698 71861105 -71925350 + L2 LINE L2 2877 3268 -4 270 250 36 36 chr12 71861670 71861754 -71924701 + L2 LINE L2 3185 3268 -4 1219 195 69 106 chr12 71862153 71862532 -71923923 + MLT1A1 LTR MaLR 1 365 0 833 294 153 17 chr12 71862707 71863119 -71923336 + LTR33 LTR ERVL 27 494 -27 703 335 161 25 chr12 71863134 71863654 -71922801 - L2 LINE L2 -527 2787 2197 44 0 0 0 chr12 71864331 71864375 -71922080 + AT_rich Low_complexity Low_complexity 1 44 0 516 250 47 62 chr12 71864415 71864607 -71921848 + MER112 DNA MER1_type 65 253 -7 337 321 29 43 chr12 71865245 71865385 -71921070 + MIR SINE MIR 19 156 -106 463 250 43 0 chr12 71865465 71865581 -71920874 + MIR SINE MIR 138 258 -4 243 103 0 0 chr12 71865627 71865666 -71920789 + (CA)n Simple_repeat Simple_repeat 2 40 0 802 194 0 8 chr12 71865783 71865917 -71920538 - FLAM_A SINE Alu 0 133 1 1787 162 53 66 chr12 71866014 71866409 -71920046 - MLT1B LTR MaLR 0 390 1 265 223 0 45 chr12 71867226 71867383 -71919072 + GA-rich Low_complexity Low_complexity 3 152 0 207 0 0 0 chr12 71868698 71868721 -71917734 + (A)n Simple_repeat Simple_repeat 1 23 0 345 365 67 17 chr12 71869260 71869498 -71916957 + L1ME4a LINE L1 5634 5883 -238 881 105 0 0 chr12 71869629 71869743 -71916712 - L1PA10 LINE L1 -1 6167 6054 191 296 0 0 chr12 71870228 71870272 -71916183 + L2 LINE L2 3257 3300 -13 916 216 18 53 chr12 71870501 71870728 -71915727 + MER20 DNA MER1_type 1 219 0 203 302 10 42 chr12 71870866 71870962 -71915493 + MIR SINE MIR 109 201 -61 213 39 0 0 chr12 71871589 71871615 -71914840 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 398 34 136 0 chr12 71871621 71871680 -71914775 - L1PA13 LINE L1 -19 6144 6078 412 138 0 0 chr12 71871680 71871745 -71914710 - L1MB3 LINE L1 -68 6115 6051 5516 107 3 4 chr12 71871754 71872500 -71913955 - L1PA13 LINE L1 0 6163 5419 3814 146 584 15 chr12 71873020 71874230 -71912225 + L1P LINE L1 11 1909 -4237 222 326 53 30 chr12 71874475 71874607 -71911848 - L2 LINE L2 -1 3312 3178 304 245 99 17 chr12 71874634 71874853 -71911602 + Charlie7 DNA MER1_type 7 2577 -35 21 36 0 0 chr12 71876547 71876575 -71909880 + AT_rich Low_complexity Low_complexity 1 28 0 654 286 74 9 chr12 71877424 71877641 -71908814 - L3 LINE CR1 -8 1569 1339 401 271 188 102 chr12 71877850 71878180 -71908275 + L3 LINE CR1 803 1200 -377 2807 120 43 19 chr12 71878180 71878598 -71907857 - MSTC LTR MaLR 0 428 1 401 271 188 102 chr12 71878598 71878816 -71907639 + L3 LINE CR1 1200 1398 -179 229 280 110 10 chr12 71878921 71879021 -71907434 - L2 LINE L2 -14 3299 3190 218 250 17 17 chr12 71879025 71879085 -71907370 + MIR3 SINE MIR 144 203 -5 218 247 284 0 chr12 71879210 71879291 -71907164 - L2 LINE L2 -16 3256 3153 629 226 15 8 chr12 71879355 71879488 -71906967 + MER94 DNA DNA 1 134 0 309 237 0 0 chr12 71879918 71879994 -71906461 + MLT1K LTR MaLR 509 584 -4 659 343 82 14 chr12 71880381 71880807 -71905648 + L2 LINE L2 1932 2386 -928 432 309 96 11 chr12 71881728 71881916 -71904539 - MIR SINE MIR -28 234 31 442 118 21 0 chr12 71883189 71883282 -71903173 + (TA)n Simple_repeat Simple_repeat 1 95 0 2966 86 18 5 chr12 71883290 71883685 -71902770 - MLT2A1 LTR ERVL -44 400 1 605 242 55 11 chr12 71883685 71883867 -71902588 - L2 LINE L2 -1128 2186 1997 395 296 97 11 chr12 71883894 71884080 -71902375 - MIR SINE MIR -1 261 60 360 217 14 0 chr12 71884098 71884167 -71902288 + L2 LINE L2 1106 1175 -2139 4679 247 48 92 chr12 71884224 71884318 -71902137 - L2 LINE L2 0 3313 3216 2325 91 3 0 chr12 71884318 71884614 -71901841 + AluY SINE Alu 1 297 -14 4679 247 48 92 chr12 71884614 71885278 -71901177 - L2 LINE L2 -97 3216 2524 2076 121 0 27 chr12 71885278 71885414 -71901041 + AluSx SINE Alu 1 139 -173 2323 67 0 58 chr12 71885414 71885743 -71900712 + AluY SINE Alu 1 310 -1 2076 121 0 27 chr12 71885743 71885903 -71900552 + AluSx SINE Alu 139 289 -23 4679 247 48 92 chr12 71885903 71886728 -71899727 - L2 LINE L2 -789 2524 1664 782 128 0 0 chr12 71886728 71886845 -71899610 - AluSg/x SINE Alu -3 307 191 4679 247 48 92 chr12 71886845 71887248 -71899207 - L2 LINE L2 -1649 1664 1315 2393 62 7 7 chr12 71887248 71887557 -71898898 + AluY SINE Alu 3 311 0 4679 247 48 92 chr12 71887557 71887725 -71898730 - L2 LINE L2 -1998 1315 1141 1092 300 110 67 chr12 71887727 71887862 -71898593 - L2 LINE L2 -1428 1886 1758 2089 126 20 0 chr12 71887862 71888156 -71898299 + AluSx SINE Alu 1 300 -12 1092 300 110 67 chr12 71888156 71888443 -71898012 - L2 LINE L2 -1556 1758 1485 2191 122 3 0 chr12 71888443 71888746 -71897709 - AluSq SINE Alu -9 304 1 1092 300 110 67 chr12 71888746 71888776 -71897679 - L2 LINE L2 -1829 1485 1458 4006 136 34 9 chr12 71888776 71889431 -71897024 - L1MA8 LINE L1 -1 6290 5620 1092 300 110 67 chr12 71889431 71889712 -71896743 - L2 LINE L2 -1856 1458 1119 255 261 292 0 chr12 71890494 71890624 -71895831 + L2 LINE L2 3121 3288 -25 450 297 131 42 chr12 71890755 71890991 -71895464 + MIR SINE MIR 5 261 -1 295 190 13 13 chr12 71892006 71892085 -71894370 + GA-rich Low_complexity Low_complexity 1 79 0 3728 51 0 7 chr12 71893437 71893888 -71892567 + LTR7 LTR ERV1 1 448 -2 20815 84 30 8 chr12 71893890 71896822 -71889633 + HERVH LTR ERV1 1 2995 -4718 1007 113 7 0 chr12 71896801 71896951 -71889504 + HERVH LTR ERV1 3140 3290 -4423 * 3432 112 0 14 chr12 71896941 71897450 -71889005 + HERVH LTR ERV1 3492 3993 -3720 2635 163 69 0 chr12 71897489 71897925 -71888530 + HERVH LTR ERV1 4681 5146 -2567 1449 108 18 31 chr12 71897932 71898155 -71888300 + HERVH LTR ERV1 5600 5819 -1894 * 2329 91 64 16 chr12 71898153 71898527 -71887928 + HERVH LTR ERV1 7322 7713 0 3759 51 0 7 chr12 71898527 71898980 -71887475 + LTR7 LTR ERV1 1 450 0 4133 117 54 66 chr12 71899005 71899704 -71886751 - LTR8 LTR ERV1 0 691 1 875 205 0 25 chr12 71901199 71901360 -71885095 + FRAM SINE Alu 1 157 -19 23 0 0 0 chr12 71901696 71901719 -71884736 + AT_rich Low_complexity Low_complexity 1 23 0 379 289 108 45 chr12 71901737 71902246 -71884209 - L2 LINE L2 -5 3308 2709 498 122 27 0 chr12 71902602 71902676 -71883779 - MER1B DNA MER1_type 0 339 264 1743 140 7 22 chr12 71902735 71903013 -71883442 - MER1B DNA MER1_type -64 275 2 392 273 144 18 chr12 71904584 71905029 -71881426 + LTR33 LTR ERVL 5 521 0 1442 199 72 19 chr12 71905361 71905722 -71880733 - LTR25 LTR ERV1 0 794 415 324 159 143 0 chr12 71905693 71905756 -71880699 - MER51A LTR ERV1 -354 280 209 * 527 134 39 9 chr12 71905922 71906033 -71880422 - MER61E LTR ERV1 -484 85 1 265 294 24 12 chr12 71906157 71906242 -71880213 + GA-rich Low_complexity Low_complexity 3 88 0 422 226 18 97 chr12 71906389 71906606 -71879849 + L2 LINE L2 3039 3238 -75 2618 137 28 24 chr12 71907268 71907692 -71878763 - MSTC LTR MaLR -2 426 1 224 197 30 45 chr12 71908437 71908503 -71877952 + MER5B DNA MER1_type 33 97 -81 321 26 0 0 chr12 71909200 71909238 -71877217 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 107 0 0 chr12 71909721 71909749 -71876706 + (TTA)n Simple_repeat Simple_repeat 1 28 0 227 103 26 0 chr12 71911368 71911407 -71875048 + (TG)n Simple_repeat Simple_repeat 1 40 0 2271 105 3 0 chr12 71912381 71912675 -71873780 + AluSx SINE Alu 1 295 -17 655 277 89 0 chr12 71913129 71913342 -71873113 - MIR SINE MIR 0 262 31 188 353 35 35 chr12 71913469 71913585 -71872870 + L2 LINE L2 3153 3268 -4 2382 203 10 43 chr12 71915689 71916173 -71870282 - MLT2B3 LTR ERVL -4 550 83 514 127 0 0 chr12 71916257 71916328 -71870127 - MLT2B3 LTR ERVL -483 71 1 224 281 0 0 chr12 71916693 71916750 -71869705 - MIR SINE MIR -96 166 110 375 374 30 21 chr12 71916924 71917353 -71869102 + MLT1L LTR MaLR 154 613 -2 407 336 14 7 chr12 71917436 71917579 -71868876 - MIR SINE MIR -110 152 9 344 281 174 16 chr12 71918277 71918398 -71868057 + MER91C DNA MER1_type 1 140 0 1513 190 3 104 chr12 71918458 71918785 -71867670 + AluJo SINE Alu 2 295 -7 459 282 51 88 chr12 71918917 71919133 -71867322 + MIR SINE MIR 49 256 -6 269 250 118 14 chr12 71919296 71919440 -71867015 - MER103 DNA DNA 0 166 8 180 143 0 0 chr12 71919759 71919787 -71866668 - L2 LINE L2 -14 3299 3272 308 161 0 54 chr12 71920582 71920638 -71865817 + MSTA LTR MaLR 1 53 -373 844 76 0 0 chr12 71920638 71920743 -71865712 + AluSg/x SINE Alu 194 298 -11 2102 160 79 3 chr12 71920743 71920893 -71865562 + MSTA LTR MaLR 46 183 -245 186 43 0 0 chr12 71920893 71920916 -71865539 + (TC)n Simple_repeat Simple_repeat 1 23 0 2102 160 79 3 chr12 71920916 71921121 -71865334 + MSTA LTR MaLR 183 428 0 1629 199 61 15 chr12 71921666 71921992 -71864463 - MER58B DNA MER1_type 0 341 1 331 288 44 38 chr12 71922030 71922190 -71864265 + MIR SINE MIR 52 212 -50 264 300 122 38 chr12 71922479 71922716 -71863739 + L2 LINE L2 2232 2488 -826 205 306 67 28 chr12 71923039 71923158 -71863297 + L2 LINE L2 2925 3048 -224 1092 188 84 0 chr12 71923283 71923485 -71862970 + MER20 DNA MER1_type 1 219 0 3841 134 2 4 chr12 71923500 71924028 -71862427 - MER1A DNA MER1_type 0 527 1 194 282 26 13 chr12 71924062 71924140 -71862315 + L2 LINE L2 3234 3312 -1 2417 90 0 3 chr12 71925255 71925565 -71860890 + AluSg SINE Alu 1 309 -1 25 51 0 0 chr12 71925690 71925729 -71860726 + AT_rich Low_complexity Low_complexity 1 39 0 2222 98 0 23 chr12 71926018 71926323 -71860132 - AluSg SINE Alu -12 298 1 840 221 39 34 chr12 71926401 71926609 -71859846 - MIR SINE MIR -34 228 20 1924 138 7 0 chr12 71926690 71926996 -71859459 + AluSx SINE Alu 1 308 0 254 247 22 11 chr12 71927102 71927191 -71859264 + (TA)n Simple_repeat Simple_repeat 2 91 0 250 257 19 57 chr12 71927255 71927360 -71859095 + MIR SINE MIR 96 196 -66 2160 33 3 106 chr12 71927397 71927732 -71858723 + AluY SINE Alu 13 316 0 435 219 91 151 chr12 71928397 71928780 -71857675 - L2 LINE L2 -3 3310 2951 2192 158 42 73 chr12 71928842 71929324 -71857131 - MLT1C LTR MaLR 0 467 1 263 194 65 32 chr12 71929363 71929425 -71857030 + MIR SINE MIR 199 262 0 1060 250 41 90 chr12 71929464 71929941 -71856514 + L2 LINE L2 2693 3128 -185 324 0 0 0 chr12 71929941 71929977 -71856478 + (CA)n Simple_repeat Simple_repeat 1 36 0 1060 250 41 90 chr12 71929977 71930155 -71856300 + L2 LINE L2 3128 3313 0 544 325 48 0 chr12 71930733 71930961 -71855494 + MARNA DNA Mariner 251 489 -97 30 0 0 0 chr12 71932353 71932383 -71854072 + AT_rich Low_complexity Low_complexity 1 30 0 948 285 122 24 chr12 71932487 71932610 -71853845 - L2 LINE L2 -2 3311 3201 234 0 0 0 chr12 71932610 71932636 -71853819 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 948 285 122 24 chr12 71932636 71932929 -71853526 - L2 LINE L2 -112 3201 2854 535 260 121 27 chr12 71933390 71933613 -71852842 - MLT1K LTR MaLR -17 571 328 1693 211 51 33 chr12 71933623 71934074 -71852381 + MLT1C LTR MaLR 9 467 0 285 259 43 52 chr12 71934382 71934498 -71851957 - MLT1L LTR MaLR -6 605 468 316 269 104 50 chr12 71934808 71935009 -71851446 - MLT1L LTR MaLR -402 213 2 1910 166 83 41 chr12 71936056 71936467 -71849988 + MSTC LTR MaLR 1 428 0 820 282 38 0 chr12 71937185 71937406 -71849049 + MIR SINE MIR 36 261 -1 4337 182 45 20 chr12 71938078 71938909 -71847546 + MER21B LTR ERV1 12 862 -1 307 234 36 36 chr12 71939527 71939638 -71846817 - HAL1b LINE L1 0 1348 1238 230 241 63 13 chr12 71941855 71941934 -71844521 - MIR3 SINE MIR -1 207 125 2081 128 13 3 chr12 71941955 71942261 -71844194 - AluJb SINE Alu -3 309 1 330 127 18 0 chr12 71943785 71943840 -71842615 + MER5A DNA MER1_type 48 103 -86 213 209 0 0 chr12 71943847 71943890 -71842565 + L2 LINE L2 3261 3303 -10 349 347 58 26 chr12 71944687 71944877 -71841578 + MIR SINE MIR 66 261 -1 300 192 154 115 chr12 71945139 71945295 -71841160 + MLT1L LTR MaLR 40 201 -414 505 316 75 14 chr12 71945376 71945771 -71840684 + LTR16B LTR ERVL 2 463 -1 305 263 0 0 chr12 71945911 71945987 -71840468 - L3 LINE CR1 -353 1224 1149 5324 110 98 72 chr12 71945987 71947109 -71839346 + pTR5 LTR ERV1 743 2025 -413 371 199 56 74 chr12 71947109 71947217 -71839238 + LTR30 LTR ERV1 372 475 -94 1540 93 5 0 chr12 71947217 71947433 -71839022 + pTR5 LTR ERV1 178 394 -2044 541 264 154 0 chr12 71947660 71947861 -71838594 + MIR SINE MIR 21 252 -10 2435 65 0 32 chr12 71947863 71948173 -71838282 - AluY SINE Alu -11 300 1 2029 155 0 0 chr12 71948174 71948470 -71837985 - AluJo SINE Alu -15 297 2 1389 211 87 0 chr12 71948740 71949052 -71837403 - MER58B DNA MER1_type -2 339 1 21 36 0 0 chr12 71949542 71949570 -71836885 + AT_rich Low_complexity Low_complexity 1 28 0 515 237 34 72 chr12 71949797 71950146 -71836309 - MLT1J LTR MaLR -18 493 102 202 149 64 0 chr12 71951001 71951048 -71835407 + T-rich Low_complexity Low_complexity 2 51 0 2476 117 8 8 chr12 71951048 71951449 -71835006 - LTR9B LTR ERV1 -84 560 160 5705 120 40 2 chr12 71951450 71952343 -71834112 - HUERS-P3b LTR ERV1 -410 7008 6082 1185 104 21 10 chr12 71952382 71952574 -71833881 - LTR9B LTR ERV1 0 644 451 2235 117 7 0 chr12 71952690 71952861 -71833594 - AluSx SINE Alu -10 302 127 279 0 0 0 chr12 71952861 71952892 -71833563 + (TG)n Simple_repeat Simple_repeat 2 32 0 2235 117 7 0 chr12 71952892 71953019 -71833436 - AluSx SINE Alu -185 127 2 1801 85 0 50 chr12 71954199 71954459 -71831996 + AluSq SINE Alu 47 293 -20 226 315 174 33 chr12 71954472 71954656 -71831799 - MIR SINE MIR -4 258 49 718 286 29 12 chr12 71955937 71956182 -71830273 + MLT1F LTR MaLR 1 249 -293 508 221 64 52 chr12 71956169 71956341 -71830114 + MLT1F LTR MaLR 394 567 0 * 873 178 35 6 chr12 71957160 71957329 -71829126 - MER45A DNA AcHobo -4 174 1 304 284 84 52 chr12 71957536 71957704 -71828751 - MIR3 SINE MIR -60 148 5 2124 99 46 0 chr12 71958113 71958397 -71828058 + AluSq SINE Alu 1 297 -16 239 230 30 10 chr12 71958997 71959097 -71827358 + (TATAA)n Simple_repeat Simple_repeat 3 104 0 403 149 47 9 chr12 71961253 71961360 -71825095 + L1M3 LINE L1 4965 5075 -1071 248 286 31 0 chr12 71961537 71961635 -71824820 + L1ME3A LINE L1 6062 6162 -8 2441 138 28 28 chr12 71962534 71962960 -71823495 - MSTB LTR MaLR 0 426 1 1410 211 158 28 chr12 71963061 71963606 -71822849 - MLT1E2 LTR MaLR 0 626 11 893 246 50 9 chr12 71964082 71964425 -71822030 + L1M3 LINE L1 5079 5439 -741 740 155 62 0 chr12 71964465 71964594 -71821861 + FRAM SINE Alu 22 158 -18 1945 194 47 47 chr12 71964601 71965131 -71821324 + L1ME3A LINE L1 5430 5959 -211 297 27 0 0 chr12 71965140 71965177 -71821278 + MADE1 DNA Mariner 6 42 -38 351 55 0 266 chr12 71965217 71965326 -71821129 + MADE1 DNA Mariner 1 80 0 635 260 36 0 chr12 71965327 71965523 -71820932 + L1ME3A LINE L1 5963 6165 -5 198 290 172 21 chr12 71965565 71965658 -71820797 + L2 LINE L2 3164 3270 -2 326 268 142 33 chr12 71965853 71966036 -71820419 - MIR SINE MIR -10 252 50 690 186 28 126 chr12 71967921 71968168 -71818287 - MER58A DNA MER1_type -1 223 1 22 35 0 0 chr12 71968265 71968294 -71818161 + AT_rich Low_complexity Low_complexity 1 29 0 1787 159 0 48 chr12 71968759 71969074 -71817381 - AluJo SINE Alu 0 312 13 667 270 140 72 chr12 71969730 71970186 -71816269 - L2 LINE L2 0 3313 2827 187 304 38 25 chr12 71970332 71970411 -71816044 + MIR SINE MIR 112 191 -71 205 200 0 0 chr12 71970466 71970506 -71815949 - L2 LINE L2 -9 3304 3265 229 313 10 20 chr12 71970522 71970621 -71815834 + GA-rich Low_complexity Low_complexity 5 102 0 568 299 78 4 chr12 71970642 71970873 -71815582 + MIR SINE MIR 10 257 -5 450 319 61 23 chr12 71971608 71971871 -71814584 + MLT1K LTR MaLR 154 426 -162 520 170 20 46 chr12 71972098 71972251 -71814204 - L1MC5 LINE L1 -215 7746 7598 22 35 0 0 chr12 71973270 71973299 -71813156 + AT_rich Low_complexity Low_complexity 1 29 0 306 296 25 0 chr12 71973598 71973679 -71812776 - L2 LINE L2 -1 3312 3230 1807 247 80 6 chr12 71974811 71975439 -71811016 + L1ME1 LINE L1 391 1064 -5332 402 175 125 0 chr12 71975456 71975536 -71810919 - MLT1B LTR MaLR -300 90 1 285 216 8 48 chr12 71975536 71975661 -71810794 - L1M4 LINE L1 -3843 2303 2184 333 68 0 0 chr12 71975682 71975726 -71810729 + (TG)n Simple_repeat Simple_repeat 2 45 0 825 244 65 13 chr12 71975733 71976041 -71810414 + L1ME1 LINE L1 2088 2411 -3985 1277 209 48 81 chr12 71976042 71976435 -71810020 + MLT1B LTR MaLR 1 380 -10 2534 226 34 71 chr12 71976442 71977559 -71808896 + L1ME1 LINE L1 2365 3440 -2775 5921 95 22 0 chr12 71977644 71978538 -71807917 - L1MA2 LINE L1 -4 6300 5387 5952 236 59 20 chr12 71978538 71979785 -71806670 + L1ME1 LINE L1 3470 4667 -1568 2166 116 17 0 chr12 71979785 71979911 -71806544 + AluSx SINE Alu 1 123 -189 405 0 0 0 chr12 71979911 71979956 -71806499 + (CA)n Simple_repeat Simple_repeat 2 46 0 2166 116 17 0 chr12 71979956 71980131 -71806324 + AluSx SINE Alu 123 307 -5 5952 236 59 20 chr12 71980131 71981541 -71804914 + L1ME1 LINE L1 4667 6231 -4 22 35 0 0 chr12 71981700 71981729 -71804726 + AT_rich Low_complexity Low_complexity 1 29 0 1627 120 32 7 chr12 71981827 71982111 -71804344 - L1MA8 LINE L1 -13 6278 5988 1560 148 4 4 chr12 71982111 71982382 -71804073 - L1M2 LINE L1 -510 5781 5508 210 71 0 0 chr12 71982396 71982424 -71804031 + (CAT)n Simple_repeat Simple_repeat 1 28 0 821 229 109 9 chr12 71982454 71982664 -71803791 - MIR SINE MIR -30 232 2 1110 276 166 31 chr12 71983179 71984144 -71802311 - HAL1 LINE L1 -599 1908 814 1151 244 27 44 chr12 71985323 71985691 -71800764 - MLT1A1 LTR MaLR 0 365 1 488 329 40 18 chr12 71986203 71986431 -71800024 + MIR SINE MIR 18 250 -12 2355 81 0 3 chr12 71986818 71987115 -71799340 + AluSc SINE Alu 1 296 -13 303 307 69 98 chr12 71987348 71987625 -71798830 + L2 LINE L2 3004 3272 0 204 234 21 0 chr12 71988833 71988880 -71797575 + CT-rich Low_complexity Low_complexity 2 49 0 257 321 66 97 chr12 71989543 71989739 -71796716 + L2 LINE L2 2990 3179 -93 267 357 86 0 chr12 71990785 71990925 -71795530 - MER5A DNA MER1_type -1 188 37 21 0 0 0 chr12 71992180 71992201 -71794254 + AT_rich Low_complexity Low_complexity 1 21 0 372 290 97 74 chr12 71993473 71993783 -71792672 + MLT1J LTR MaLR 101 417 -94 3166 177 74 14 chr12 71995549 71995620 -71790835 - L1MB7 LINE L1 -14 6170 6105 2425 70 0 10 chr12 71995620 71995920 -71790535 + AluY SINE Alu 1 297 -14 426 39 0 0 chr12 71995921 71995973 -71790482 + (TA)n Simple_repeat Simple_repeat 2 53 0 3166 177 74 14 chr12 71995973 71996606 -71789849 - L1MB7 LINE L1 -78 6106 5422 821 118 8 0 chr12 71996630 71996757 -71789698 - L1PB3 LINE L1 -6 6148 6021 2012 124 3 0 chr12 71996817 71997130 -71789325 - AluSq SINE Alu 0 314 1 346 292 84 32 chr12 71997530 71997684 -71788771 - MIR SINE MIR -72 190 29 27 0 0 0 chr12 71997857 71997884 -71788571 + AT_rich Low_complexity Low_complexity 1 27 0 1258 145 9 0 chr12 71998355 71998569 -71787886 - L1PA13 LINE L1 -2 6161 5946 396 0 0 0 chr12 71998944 71998988 -71787467 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr12 71999209 71999231 -71787224 + AT_rich Low_complexity Low_complexity 1 22 0 405 124 45 0 chr12 71999222 71999311 -71787144 - L1MA7 LINE L1 0 6291 6199 353 327 59 0 chr12 71999751 71999852 -71786603 + MIR SINE MIR 34 140 -122 494 315 51 6 chr12 72000798 72000976 -71785479 - L2 LINE L2 0 3313 3128 439 322 87 7 chr12 72001161 72001310 -71785145 - L2 LINE L2 -5 3267 3107 1719 258 35 12 chr12 72001398 72001905 -71784550 + LTR40a LTR ERVL 1 519 0 910 273 104 28 chr12 72002022 72002455 -71784000 + MLT1J LTR MaLR 1 466 -45 258 312 37 0 chr12 72004249 72004358 -71782097 + MER103 DNA DNA 52 164 -2 22 0 0 0 chr12 72005242 72005264 -71781191 + AT_rich Low_complexity Low_complexity 1 22 0 799 294 87 0 chr12 72005277 72005508 -71780947 + MIR SINE MIR 2 252 -10 2110 127 0 0 chr12 72005532 72005824 -71780631 + AluSx SINE Alu 1 292 -20 198 324 79 14 chr12 72006837 72006976 -71779479 - L2 LINE L2 -954 2360 2213 277 262 76 46 chr12 72007156 72007308 -71779147 + MLT1J2 LTR MaLR 1 155 -291 274 128 26 115 chr12 72007443 72007521 -71778934 + MLT1J2 LTR MaLR 350 420 -30 2103 102 7 3 chr12 72007534 72007840 -71778615 - AluSq SINE Alu 0 307 1 242 274 239 10 chr12 72008775 72008972 -71777483 - L2 LINE L2 -214 3058 2817 2262 186 28 13 chr12 72009022 72009480 -71776975 - MLT1C LTR MaLR 0 467 3 352 212 161 17 chr12 72009655 72009773 -71776682 + MIR SINE MIR 110 244 -18 1646 194 0 7 chr12 72010473 72010761 -71775694 + AluJo SINE Alu 5 290 -22 481 306 153 25 chr12 72011585 72011820 -71774635 + L2 LINE L2 3008 3272 0 213 284 30 0 chr12 72012360 72012427 -71774028 + (TG)n Simple_repeat Simple_repeat 2 70 0 225 132 0 0 chr12 72013442 72013480 -71772975 + (TG)n Simple_repeat Simple_repeat 1 38 0 973 203 54 54 chr12 72014787 72015083 -71771372 - MER47A DNA MER2_type -70 296 1 310 291 18 9 chr12 72015540 72015650 -71770805 + GA-rich Low_complexity Low_complexity 4 114 0 269 188 125 54 chr12 72016321 72016433 -71770022 + L1ME4a LINE L1 5967 6086 -35 2310 120 0 3 chr12 72016616 72016925 -71769530 - AluSg SINE Alu -2 308 1 721 223 158 11 chr12 72017280 72017558 -71768897 + MER33 DNA MER1_type 5 323 -1 301 321 55 0 chr12 72019063 72019172 -71767283 + L2 LINE L2 2778 2892 -422 206 194 0 0 chr12 72019173 72019209 -71767246 - L2 LINE L2 -94 3219 3184 576 311 66 59 chr12 72019524 72019916 -71766539 - L2 LINE L2 -47 3225 2831 258 56 0 0 chr12 72020139 72020175 -71766280 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 287 111 9 chr12 72020357 72020465 -71765990 - MER103 DNA DNA -47 119 1 207 0 0 0 chr12 72021871 72021894 -71764561 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr12 72022286 72022310 -71764145 + (A)n Simple_repeat Simple_repeat 1 24 0 206 248 209 48 chr12 72022783 72022888 -71763567 - L2 LINE L2 0 3272 3151 354 339 47 6 chr12 72024375 72024546 -71761909 - MIR SINE MIR -6 256 79 484 375 56 12 chr12 72024614 72024937 -71761518 - L2 LINE L2 -56 3257 2921 692 328 111 46 chr12 72024959 72025529 -71760926 + L1M4 LINE L1 3714 4320 -1826 1047 124 40 27 chr12 72025544 72025775 -71760680 - L1P LINE L1 -746 5408 5183 2747 103 47 43 chr12 72025775 72026289 -71760166 + L1MA8 LINE L1 5771 6286 -5 21 0 0 0 chr12 72026295 72026316 -71760139 + AT_rich Low_complexity Low_complexity 1 21 0 40436 36 23 1 chr12 72026325 72032341 -71754114 - L1PA2 LINE L1 -5 6150 1 3602 17 17 0 chr12 72032368 72032788 -71753667 - L1PA2 LINE L1 0 6155 5729 386 37 0 0 chr12 72032788 72032842 -71753613 + L1P LINE L1 5296 5349 -806 239 224 97 45 chr12 72033039 72033173 -71753282 + L1ME LINE L1 5761 5901 -220 318 301 15 0 chr12 72033226 72033362 -71753093 + (TA)n Simple_repeat Simple_repeat 1 138 0 188 111 28 0 chr12 72033378 72033414 -71753041 + (TA)n Simple_repeat Simple_repeat 2 38 0 1065 261 80 108 chr12 72034906 72035285 -71751170 + L2 LINE L2 2304 2692 -621 1951 140 7 14 chr12 72035285 72035577 -71750878 + AluSx SINE Alu 1 290 -22 1065 261 80 108 chr12 72035577 72036203 -71750252 + L2 LINE L2 2692 3304 -9 263 148 19 0 chr12 72036203 72036257 -71750198 + L1MB8 LINE L1 6110 6164 -14 3346 125 8 6 chr12 72036257 72036778 -71749677 + L1PB4 LINE L1 5628 6149 -7 497 234 127 54 chr12 72036994 72037199 -71749256 - MIR SINE MIR -2 260 41 269 284 59 10 chr12 72038054 72038156 -71748299 - MIR SINE MIR -45 217 111 873 198 56 0 chr12 72038269 72038466 -71747989 - MER3 DNA MER1_type 0 209 2 334 344 122 8 chr12 72038767 72038898 -71747557 - MIR3 SINE MIR -57 151 6 1695 134 50 8 chr12 72041959 72042221 -71744234 - AluSq SINE Alu 0 313 41 394 274 40 99 chr12 72042533 72042645 -71743810 - MIR SINE MIR -3 259 142 1901 135 34 10 chr12 72042645 72042942 -71743513 - AluSx SINE Alu -8 304 1 394 274 40 99 chr12 72042942 72042971 -71743484 - MIR SINE MIR -120 142 113 1932 128 57 0 chr12 72042971 72043267 -71743188 + AluSp SINE Alu 1 313 0 394 274 40 99 chr12 72043267 72043347 -71743108 - MIR SINE MIR -149 113 50 193 312 128 59 chr12 72043425 72043800 -71742655 + L2 LINE L2 2323 2723 -591 377 259 56 0 chr12 72043816 72043924 -71742531 - MIR SINE MIR -136 126 13 219 390 76 12 chr12 72044442 72044614 -71741841 - MIR SINE MIR -60 202 20 1652 199 16 0 chr12 72044649 72045015 -71741440 - L1MD3 LINE L1 0 7995 7624 195 304 0 0 chr12 72045598 72045644 -71740811 + L2 LINE L2 3209 3254 -18 718 244 183 5 chr12 72045661 72045874 -71740581 - MIR SINE MIR -10 252 2 563 245 76 21 chr12 72048723 72048908 -71737547 - MIR SINE MIR -62 146 1 438 311 122 14 chr12 72049322 72049544 -71736911 - MIR SINE MIR -4 258 13 644 229 52 0 chr12 72051772 72051925 -71734530 - MIR SINE MIR -88 174 14 370 254 76 25 chr12 72052157 72052275 -71734180 - MIR SINE MIR -79 183 60 15009 189 33 28 chr12 72052382 72052779 -71733676 - MER21-int LTR ERV1 -59 4132 3739 459 0 0 0 chr12 72052779 72052830 -71733625 + (CATA)n Simple_repeat Simple_repeat 2 52 0 15009 189 33 28 chr12 72052830 72054922 -71731533 - MER21-int LTR ERV1 -452 3739 1620 2554 69 0 0 chr12 72054922 72055228 -71731227 - AluY SINE Alu -5 306 1 15009 189 33 28 chr12 72055228 72055976 -71730479 - MER21-int LTR ERV1 -2571 1620 877 1272 167 54 8 chr12 72056006 72056264 -71730191 - MSTA LTR MaLR 0 428 159 195 100 0 0 chr12 72056298 72056328 -71730127 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 2198 116 0 0 chr12 72056328 72056613 -71729842 - AluSg SINE Alu -25 285 1 202 242 101 81 chr12 72056773 72056922 -71729533 + L2 LINE L2 3160 3311 -2 22 0 0 0 chr12 72056939 72056961 -71729494 + AT_rich Low_complexity Low_complexity 1 22 0 2191 89 20 3 chr12 72057245 72057537 -71728918 + AluY SINE Alu 1 297 -14 329 289 47 87 chr12 72057617 72057699 -71728756 + L2 LINE L2 3126 3201 -71 820 230 145 69 chr12 72057699 72058252 -71728203 - MLT1G1 LTR MaLR 0 595 1 329 289 47 87 chr12 72058252 72058318 -71728137 + L2 LINE L2 3201 3268 -4 234 0 0 0 chr12 72058891 72058917 -71727538 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1057 195 0 0 chr12 72059104 72059278 -71727177 + FRAM SINE Alu 1 174 -2 331 267 35 17 chr12 72059417 72059533 -71726922 + MER103 DNA DNA 28 145 -21 4449 126 64 7 chr12 72059990 72060727 -71725728 + MER4E LTR ERV1 1 779 0 306 335 44 37 chr12 72060976 72061248 -71725207 - MLT1J LTR MaLR -3 508 235 1662 116 30 4 chr12 72061931 72062198 -71724257 + MER4E LTR ERV1 1 274 -505 30190 104 16 58 chr12 72062213 72068632 -71717823 + L1PA7 LINE L1 12 6147 -7 997 241 0 0 chr12 72068659 72068862 -71717593 + MLT1A1 LTR MaLR 163 365 0 2571 134 61 51 chr12 72068908 72069415 -71717040 + MER4E LTR ERV1 266 777 -2 187 247 59 94 chr12 72069479 72069564 -71716891 + MIR SINE MIR 23 104 -104 1878 245 54 38 chr12 72069584 72070144 -71716311 - MLT1E LTR MaLR 0 593 25 270 250 10 110 chr12 72070270 72070370 -71716085 + L2 LINE L2 3199 3288 -25 506 247 73 40 chr12 72070375 72070525 -71715930 - L2 LINE L2 -1 3312 3158 191 319 76 42 chr12 72071196 72071315 -71715140 - L2 LINE L2 -836 2478 2356 2409 88 3 0 chr12 72071527 72071824 -71714631 + AluSp SINE Alu 1 298 -15 361 236 40 69 chr12 72072334 72072390 -71714065 - L1MEd LINE L1 -2622 3507 3451 1216 221 44 49 chr12 72072390 72072757 -71713698 + MLT1A1 LTR MaLR 1 365 0 361 236 40 69 chr12 72072757 72072975 -71713480 - L1MEd LINE L1 -2678 3451 3241 1016 286 76 37 chr12 72073018 72073214 -71713241 - L1MEd LINE L1 -3002 3127 2940 957 173 0 58 chr12 72073214 72073387 -71713068 + FRAM SINE Alu 1 163 -3 1016 286 76 37 chr12 72073387 72073826 -71712629 - L1MEd LINE L1 -3189 2940 2519 1776 144 24 17 chr12 72073826 72074118 -71712337 - AluJb SINE Alu -14 298 5 1016 286 76 37 chr12 72074118 72074558 -71711897 - L1MEd LINE L1 -3610 2519 2034 531 268 114 47 chr12 72074660 72074883 -71711572 - L1MEd LINE L1 -4584 1726 1519 2295 80 3 3 chr12 72074883 72075184 -71711271 + AluY SINE Alu 1 301 -10 531 268 114 47 chr12 72075184 72075855 -71710600 - L1MEd LINE L1 -4791 1519 732 8858 107 8 0 chr12 72076375 72078477 -71707978 + L1PA10 LINE L1 4028 6166 -2 7037 167 16 22 chr12 72078485 72078818 -71707637 + L1PA16 LINE L1 3775 4108 -2058 2185 118 25 25 chr12 72078818 72079182 -71707273 + THE1B LTR MaLR 1 364 0 7037 167 16 22 chr12 72079182 72081170 -71705285 + L1PA16 LINE L1 4108 6105 -61 2083 105 3 11 chr12 72081170 72081456 -71704999 + AluSx SINE Alu 1 284 -28 252 0 0 0 chr12 72081463 72081491 -71704964 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 7037 167 16 22 chr12 72081491 72081545 -71704910 + L1PA16 LINE L1 6111 6144 -22 25 31 0 0 chr12 72081545 72081577 -71704878 + AT_rich Low_complexity Low_complexity 1 32 0 1355 229 51 27 chr12 72081577 72081952 -71704503 + MLT1D LTR MaLR 120 503 -2 2151 16 0 0 chr12 72081985 72082240 -71704215 - L1PA3 LINE L1 -496 5659 5405 4060 34 0 0 chr12 72082240 72082717 -71703738 + L1PA3 LINE L1 5678 6155 0 552 302 24 0 chr12 72082726 72082938 -71703517 + HAL1 LINE L1 92 308 -2199 2571 235 17 26 chr12 72083124 72083847 -71702608 + L1ME2 LINE L1 5440 6155 -9 3016 261 251 5 chr12 72083911 72085268 -71701187 + L2 LINE L2 1026 2719 -595 753 257 97 58 chr12 72085268 72085579 -71700876 - MER5C DNA MER1_type 0 324 2 708 289 224 10 chr12 72085587 72086072 -71700383 + L2 LINE L2 2712 3313 0 358 277 92 45 chr12 72086709 72087001 -71699454 + L1ME4a LINE L1 5788 6093 -28 278 248 156 0 chr12 72087861 72087970 -71698485 + MER117 DNA MER1_type 12 137 -60 550 329 54 2 chr12 72088129 72088536 -71697919 - L1ME3A LINE L1 -221 5949 5522 14105 75 5 0 chr12 72088922 72090666 -71695789 + L1PA6 LINE L1 3403 5197 -967 183 42 0 0 chr12 72090666 72090690 -71695765 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14105 75 5 0 chr12 72090690 72091663 -71694792 + L1PA6 LINE L1 5197 6164 0 189 0 0 0 chr12 72091958 72091979 -71694476 + (TTA)n Simple_repeat Simple_repeat 2 22 0 567 125 0 10 chr12 72092014 72092118 -71694337 - L1MA4 LINE L1 -4 6296 6194 1749 84 32 46 chr12 72092452 72092651 -71693804 - MER1A DNA MER1_type -2173 529 334 2295 104 7 0 chr12 72092651 72092958 -71693497 - AluSx SINE Alu -3 309 1 1749 84 32 46 chr12 72092958 72093042 -71693413 - MER1A DNA MER1_type -2368 334 250 871 285 96 10 chr12 72094099 72094559 -71691896 - LTR67 LTR ERVL -4 553 2 1058 297 51 34 chr12 72094999 72095725 -71690730 - L2 LINE L2 -54 3259 2450 988 280 68 11 chr12 72095734 72096102 -71690353 + MLT1G1 LTR MaLR 1 389 -206 750 253 68 21 chr12 72096431 72096621 -71689834 - MIR SINE MIR -38 224 26 311 289 18 26 chr12 72096736 72096850 -71689605 + L2 LINE L2 2596 2708 -606 2353 56 0 0 chr12 72097283 72097570 -71688885 - AluY SINE Alu -22 289 3 190 88 29 29 chr12 72098400 72098434 -71688021 + MER5A DNA MER1_type 134 167 -22 2044 110 29 23 chr12 72099823 72100131 -71686324 + AluSg SINE Alu 1 310 0 215 254 55 0 chr12 72102015 72102070 -71684385 + MIR SINE MIR 131 188 -74 629 297 64 4 chr12 72102122 72102388 -71684067 - LTR16A1 LTR ERVL -2 455 174 220 262 0 0 chr12 72102656 72102698 -71683757 + L2 LINE L2 3215 3256 -16 333 0 0 0 chr12 72103628 72103665 -71682790 + (CA)n Simple_repeat Simple_repeat 2 38 0 401 323 94 53 chr12 72103679 72104115 -71682340 - L1M4 LINE L1 -1162 4984 4531 382 164 14 14 chr12 72105246 72105319 -71681136 - Tigger5 DNA MER2_type 0 2323 2251 271 170 0 0 chr12 72105289 72105336 -71681119 - Tigger5 DNA MER2_type -2269 54 8 * 27 29 0 0 chr12 72105806 72105840 -71680615 + AT_rich Low_complexity Low_complexity 1 34 0 217 269 15 0 chr12 72106087 72106154 -71680301 + T-rich Low_complexity Low_complexity 2 69 0 270 0 0 0 chr12 72106769 72106799 -71679656 + (TG)n Simple_repeat Simple_repeat 2 31 0 2749 72 17 0 chr12 72107196 72107545 -71678910 + THE1A LTR MaLR 1 355 0 222 319 87 113 chr12 72107582 72107848 -71678607 + L2 LINE L2 2946 3204 -68 536 254 65 65 chr12 72109360 72109561 -71676894 + L2 LINE L2 2633 2833 -481 253 250 119 0 chr12 72109656 72109740 -71676715 + L2 LINE L2 2801 2894 -420 2399 251 57 60 chr12 72109746 72110168 -71676287 - L1M4 LINE L1 -2318 3828 3406 2510 137 11 70 chr12 72110168 72110622 -71675833 - MSTA LTR MaLR 0 428 2 2399 251 57 60 chr12 72110622 72111311 -71675144 - L1M4 LINE L1 -2740 3406 2721 1254 258 120 16 chr12 72111312 72111547 -71674908 + L2 LINE L2 2904 3192 -121 333 0 0 0 chr12 72111547 72111584 -71674871 + (TG)n Simple_repeat Simple_repeat 2 38 0 1254 258 120 16 chr12 72111584 72111716 -71674739 + L2 LINE L2 3192 3309 -4 242 292 83 14 chr12 72111878 72111950 -71674505 - L2 LINE L2 -38 3234 3158 190 401 83 0 chr12 72111974 72112106 -71674349 - L2 LINE L2 -463 2851 2709 1587 307 80 36 chr12 72112140 72113002 -71673453 - L2 LINE L2 -5 3308 2382 1674 163 94 30 chr12 72113002 72113365 -71673090 + MLT1B LTR MaLR 1 386 -4 1587 307 80 36 chr12 72113365 72113548 -71672907 - L2 LINE L2 -931 2382 2208 22 0 0 0 chr12 72113874 72113896 -71672559 + AT_rich Low_complexity Low_complexity 1 22 0 181 43 0 0 chr12 72114040 72114063 -71672392 + MIR SINE MIR 215 237 -25 867 283 117 36 chr12 72114378 72114872 -71671583 - MLT1H LTR MaLR -2 547 14 802 291 57 0 chr12 72115457 72115684 -71670771 + MIR SINE MIR 23 262 0 699 249 175 5 chr12 72117520 72117737 -71668718 + MIR SINE MIR 8 261 -1 25 0 0 0 chr12 72118189 72118214 -71668241 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr12 72118214 72118243 -71668212 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 182 333 34 77 chr12 72118696 72118930 -71667525 - L2 LINE L2 -54 3259 3036 196 289 200 0 chr12 72119051 72119141 -71667314 - MIR SINE MIR -35 227 120 590 355 126 20 chr12 72119397 72120153 -71666302 + L2 LINE L2 2434 3270 -2 572 277 97 5 chr12 72120356 72120562 -71665893 - MIR SINE MIR -25 237 13 255 324 77 65 chr12 72120574 72120744 -71665711 - MER5A DNA MER1_type -14 175 4 328 231 26 13 chr12 72121048 72121126 -71665329 - MIR SINE MIR -116 146 68 675 201 122 19 chr12 72122133 72122169 -71664286 - MLT2D LTR ERVL 0 414 383 276 53 0 0 chr12 72122169 72122207 -71664248 + (TG)n Simple_repeat Simple_repeat 2 39 0 675 201 122 19 chr12 72122207 72122365 -71664090 - MLT2D LTR ERVL -31 383 226 5114 105 5 9 chr12 72122386 72123189 -71663266 + L1PB1 LINE L1 5344 6143 -8 948 224 12 12 chr12 72123192 72123437 -71663018 - MLT2D LTR ERVL -169 245 1 358 298 8 0 chr12 72123505 72123636 -71662819 - MER103 DNA DNA 0 166 35 202 114 29 0 chr12 72124465 72124500 -71661955 + CT-rich Low_complexity Low_complexity 4 39 0 282 248 170 14 chr12 72125940 72126081 -71660374 + MIR SINE MIR 100 262 0 183 259 123 25 chr12 72126082 72126163 -71660292 - MIR3 SINE MIR -34 174 86 298 279 115 0 chr12 72127203 72127325 -71659130 + MLT1J2 LTR MaLR 258 393 -57 2228 111 10 0 chr12 72127350 72127657 -71658798 + AluY SINE Alu 1 310 -1 564 302 36 58 chr12 72127780 72128005 -71658450 - MIR SINE MIR -26 236 17 238 215 32 118 chr12 72128028 72128055 -71658400 + MER5B DNA MER1_type 19 47 -131 836 261 98 34 chr12 72128055 72128472 -71657983 + MLT1J1 LTR MaLR 1 444 -2 238 215 32 118 chr12 72128472 72128537 -71657918 + MER5B DNA MER1_type 47 103 -75 2367 78 0 0 chr12 72128561 72128856 -71657599 - AluY SINE Alu -16 295 1 248 279 12 12 chr12 72129135 72129221 -71657234 + CT-rich Low_complexity Low_complexity 1 86 0 783 317 12 4 chr12 72129676 72129919 -71656536 - MIR SINE MIR -4 258 14 1090 212 69 18 chr12 72129982 72130481 -71655974 - MLT1E1 LTR MaLR 0 654 8 230 250 0 0 chr12 72131574 72131618 -71654837 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 159 43 116 chr12 72132786 72132855 -71653600 + L3 LINE CR1 1202 1265 -312 2320 68 31 0 chr12 72133066 72133358 -71653097 - AluY SINE Alu -10 301 1 24 32 0 0 chr12 72134424 72134455 -71652000 + AT_rich Low_complexity Low_complexity 1 31 0 198 208 0 0 chr12 72135865 72135913 -71650542 + (TG)n Simple_repeat Simple_repeat 1 48 0 1517 177 10 52 chr12 72136307 72136612 -71649843 - AluJo SINE Alu -20 292 1 760 205 44 10 chr12 72136742 72136947 -71649508 - L1MC4a LINE L1 0 7808 7597 3399 240 63 61 chr12 72136980 72137849 -71648606 - L1MC4 LINE L1 -392 7496 6630 281 0 60 20 chr12 72137849 72137899 -71648556 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3399 240 63 61 chr12 72137899 72139812 -71646643 - L1MC4 LINE L1 -1258 6630 4672 416 258 55 37 chr12 72139837 72140038 -71646417 - L1MC4 LINE L1 -1685 4461 4263 304 230 35 0 chr12 72140051 72140138 -71646317 + MLT1J2 LTR MaLR 359 448 -2 309 292 44 36 chr12 72140562 72140699 -71645756 + L2 LINE L2 2659 2796 -518 363 297 187 0 chr12 72140732 72140887 -71645568 + L2 LINE L2 3129 3312 -1 2248 122 0 0 chr12 72141239 72141550 -71644905 - AluY SINE Alu 0 311 1 2388 91 3 0 chr12 72141551 72141849 -71644606 - AluSc SINE Alu -10 299 1 572 262 152 43 chr12 72141978 72142188 -71644267 - MIR SINE MIR -14 248 16 242 265 61 8 chr12 72143311 72143443 -71643012 - L1ME4a LINE L1 -5 6116 5978 394 277 90 11 chr12 72144589 72144818 -71641637 + L1ME3A LINE L1 5704 5948 -222 234 128 0 0 chr12 72144915 72144954 -71641501 + (GA)n Simple_repeat Simple_repeat 2 40 0 2212 84 3 3 chr12 72146107 72146392 -71640063 + AluSg SINE Alu 9 293 -17 485 288 37 34 chr12 72148634 72148842 -71637613 + MIR SINE MIR 2 218 -44 194 302 19 0 chr12 72148991 72149044 -71637411 - L2 LINE L2 -19 3253 3200 436 318 30 2 chr12 72149207 72149378 -71637077 + MIR SINE MIR 23 198 -61 312 91 0 0 chr12 72149379 72149423 -71637032 + (GA)n Simple_repeat Simple_repeat 1 44 0 1709 131 36 20 chr12 72149469 72149775 -71636680 - THE1C LTR MaLR -3 372 62 234 0 0 0 chr12 72150008 72150034 -71636421 + (A)n Simple_repeat Simple_repeat 1 26 0 205 271 199 60 chr12 72150161 72150312 -71636143 + MIR SINE MIR 13 184 -78 214 171 122 0 chr12 72150323 72150364 -71636091 + L2 LINE L2 3224 3269 -3 2165 163 150 22 chr12 72150701 72151162 -71635293 - MLT2B1 LTR ERVL 0 520 1 1818 191 58 27 chr12 72151162 72151390 -71635065 + MLT1C LTR MaLR 43 291 -176 1695 197 3 7 chr12 72151390 72151695 -71634760 + AluJb SINE Alu 1 304 -8 1818 191 58 27 chr12 72151695 72151878 -71634577 + MLT1C LTR MaLR 291 467 0 509 225 72 11 chr12 72151960 72152170 -71634285 + MLT1H LTR MaLR 24 271 -196 864 213 0 12 chr12 72152174 72152334 -71634121 + AluJo SINE Alu 1 158 -154 228 211 53 13 chr12 72152484 72152560 -71633895 + MLT1H LTR MaLR 464 542 0 316 226 0 20 chr12 72152610 72152712 -71633743 + MER20B DNA MER1_type 684 783 0 359 273 58 16 chr12 72152855 72152976 -71633479 + MIR SINE MIR 84 209 -53 2653 125 28 28 chr12 72153337 72153769 -71632686 - MSTB1 LTR MaLR 0 432 1 901 320 103 44 chr12 72153791 72154356 -71632099 + L3 LINE CR1 971 1568 -9 198 103 0 0 chr12 72154862 72154891 -71631564 + (A)n Simple_repeat Simple_repeat 1 29 0 339 236 0 0 chr12 72156050 72156122 -71630333 + MER58 DNA MER1_type 2348 2419 -1 345 183 111 100 chr12 72156123 72156228 -71630227 - L1ME4a LINE L1 -103 6018 5909 4517 127 12 16 chr12 72156228 72156997 -71629458 - L1MA4A LINE L1 -6 6297 5532 345 183 111 100 chr12 72156997 72157071 -71629384 - L1ME4a LINE L1 -212 5909 5837 680 110 13 110 chr12 72157205 72157360 -71629095 - L1MB3 LINE L1 -2 6181 6042 2280 82 9 9 chr12 72157363 72157682 -71628773 - L1PA13 LINE L1 0 6163 5845 295 183 0 28 chr12 72157682 72157753 -71628702 - L1MB2 LINE L1 -112 6059 5991 1980 156 24 14 chr12 72157781 72158152 -71628303 - THE1C LTR MaLR 0 375 1 244 250 0 0 chr12 72159550 72159602 -71626853 + MIR SINE MIR 101 152 -110 27210 133 21 49 chr12 72159613 72165964 -71620491 + L1PA8 LINE L1 2 6172 0 311 359 20 20 chr12 72168535 72168733 -71617722 - MIR3 SINE MIR -1 207 10 2246 120 13 31 chr12 72168783 72169165 -71617290 + THE1C LTR MaLR 1 375 0 1963 130 21 0 chr12 72169304 72169588 -71616867 - AluSx SINE Alu -21 291 2 1353 265 152 2 chr12 72169983 72170410 -71616045 + LTR16C LTR ERVL 1 491 0 310 298 60 24 chr12 72170473 72170731 -71615724 - MLT1L LTR MaLR -14 590 232 555 318 8 80 chr12 72172050 72172289 -71614166 - MIR SINE MIR -28 234 13 212 200 0 22 chr12 72172915 72172960 -71613495 + GA-rich Low_complexity Low_complexity 2 45 0 22 56 0 0 chr12 72173022 72173058 -71613397 + AT_rich Low_complexity Low_complexity 1 36 0 591 231 227 25 chr12 72173337 72173575 -71612880 - L2 LINE L2 -2 3311 3026 498 353 31 46 chr12 72174938 72175413 -71611042 + L1MEd LINE L1 913 1477 -1013 574 255 95 33 chr12 72175423 72175666 -71610789 + MIR SINE MIR 1 258 -4 198 0 0 0 chr12 72176141 72176163 -71610292 + (TG)n Simple_repeat Simple_repeat 2 23 0 522 284 84 38 chr12 72176190 72176429 -71610026 + L1MC4 LINE L1 6714 6963 -1079 2250 125 37 3 chr12 72176665 72177017 -71609438 + THE1B LTR MaLR 1 364 0 239 217 0 0 chr12 72177706 72177752 -71608703 - MLT1J1 LTR MaLR 0 446 401 1563 194 118 14 chr12 72178461 72178884 -71607571 + MLT1C LTR MaLR 1 467 0 313 311 106 6 chr12 72178906 72179067 -71607388 + MIR SINE MIR 65 241 -21 412 287 90 72 chr12 72179341 72179686 -71606769 - L2 LINE L2 0 3272 2922 267 200 163 0 chr12 72180112 72180192 -71606263 + MLT1J1 LTR MaLR 350 442 -4 2026 189 3 6 chr12 72180559 72180925 -71605530 - MLT1A1 LTR MaLR 0 365 1 286 206 27 27 chr12 72181225 72181298 -71605157 - MIR SINE MIR -120 142 70 854 121 0 0 chr12 72181401 72181517 -71604938 - AluSp/q SINE Alu -9 304 189 11975 21 0 1 chr12 72181526 72183696 -71602759 - L1PA3 LINE L1 -2 6153 3986 646 320 8 40 chr12 72184260 72184507 -71601948 - MIR SINE MIR -1 261 23 273 283 97 0 chr12 72184567 72184680 -71601775 - MIR SINE MIR -48 214 91 1938 149 0 0 chr12 72184713 72185021 -71601434 - AluSx SINE Alu 0 308 1 478 240 47 16 chr12 72185033 72185162 -71601293 + MER94 DNA DNA 1 133 -1 256 322 42 49 chr12 72185590 72185733 -71600722 + MER5B DNA MER1_type 12 153 -25 180 77 0 0 chr12 72186053 72186079 -71600376 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2206 102 7 0 chr12 72186601 72186886 -71599569 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 72187115 72187136 -71599319 + AT_rich Low_complexity Low_complexity 1 21 0 489 240 0 56 chr12 72187863 72187936 -71598519 + MIR3 SINE MIR 82 147 -61 2314 82 10 0 chr12 72187936 72188240 -71598215 + AluY SINE Alu 1 307 -4 489 240 0 56 chr12 72188240 72188291 -71598164 + MIR3 SINE MIR 147 199 -9 364 195 37 0 chr12 72189764 72189846 -71596609 - MSTD LTR MaLR 0 396 312 276 242 0 16 chr12 72190293 72190355 -71596100 - MIR SINE MIR -130 78 18 376 229 175 33 chr12 72191379 72191562 -71594893 + L3 LINE CR1 1256 1464 -113 1176 120 111 14 chr12 72192073 72192281 -71594174 + MER30 DNA MER1_type 1 228 -2 27 29 0 0 chr12 72193117 72193151 -71593304 + AT_rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr12 72193343 72193368 -71593087 + (CAT)n Simple_repeat Simple_repeat 3 27 0 289 329 121 7 chr12 72193406 72193555 -71592900 - MIR SINE MIR -95 167 2 1144 132 0 16 chr12 72194201 72194390 -71592065 + MER83 LTR ERV1 263 448 0 23623 108 10 21 chr12 72194390 72196634 -71589821 + MER83-int LTR ERV1 12 2280 -2005 2191 121 0 0 chr12 72196634 72196931 -71589524 - AluSx SINE Alu 0 312 16 23623 108 10 21 chr12 72196931 72198328 -71588127 + MER83-int LTR ERV1 2280 3548 -737 1956 118 121 18 chr12 72198328 72198658 -71587797 + THE1B LTR MaLR 1 364 0 23623 108 10 21 chr12 72198658 72199377 -71587078 + MER83-int LTR ERV1 3548 4274 -11 2280 144 117 5 chr12 72199378 72199781 -71586674 + MER83 LTR ERV1 1 448 0 912 274 97 30 chr12 72200041 72200708 -71585747 + L2 LINE L2 2453 3180 -133 732 293 175 13 chr12 72200761 72201339 -71585116 - L2 LINE L2 -75 3238 2569 287 378 6 0 chr12 72201721 72201877 -71584578 + HERVL LTR ERVL 5131 5287 -367 1057 291 72 43 chr12 72202166 72202566 -71583889 + LTR33 LTR ERVL 15 433 -88 1636 149 17 112 chr12 72202566 72202969 -71583486 + MLT1A1 LTR MaLR 1 365 0 1057 291 72 43 chr12 72202969 72203052 -71583403 + LTR33 LTR ERVL 433 512 -9 192 284 137 66 chr12 72204034 72204217 -71582238 - L2 LINE L2 -97 3175 2980 235 250 163 38 chr12 72204377 72204457 -71581998 + L2 LINE L2 3169 3258 -14 382 219 0 76 chr12 72205499 72205618 -71580837 - MER58C DNA MER1_type -1 214 105 189 176 0 44 chr12 72205618 72205686 -71580769 + CT-rich Low_complexity Low_complexity 1 65 0 369 232 95 0 chr12 72205686 72205781 -71580674 - MER58C DNA MER1_type -106 109 6 739 171 20 14 chr12 72206078 72206224 -71580231 - L1MC1 LINE L1 -22 6311 6165 660 263 42 34 chr12 72207520 72207756 -71578699 - L2 LINE L2 -18 3295 3058 1963 142 22 19 chr12 72207759 72208126 -71578329 - MLT1B LTR MaLR 0 390 23 563 277 36 50 chr12 72208178 72208495 -71577960 - L2 LINE L2 -260 3053 2740 343 336 7 27 chr12 72209241 72209387 -71577068 + MIR SINE MIR 49 191 -71 314 279 70 23 chr12 72209613 72209742 -71576713 + MIR SINE MIR 11 145 -117 255 212 0 40 chr12 72210168 72210267 -71576188 + CT-rich Low_complexity Low_complexity 4 98 0 2138 174 18 21 chr12 72210271 72210708 -71575747 - L1MB5 LINE L1 0 6174 5739 896 294 68 43 chr12 72210719 72211320 -71575135 + L2 LINE L2 2698 3306 -7 389 208 0 10 chr12 72211820 72211916 -71574539 - HsTC2 DNA Tc2 -1 1897 1803 1141 208 65 3 chr12 72211920 72212214 -71574241 - HsTC2 DNA Tc2 -1466 432 121 21 36 0 0 chr12 72212247 72212275 -71574180 + AT_rich Low_complexity Low_complexity 1 28 0 337 291 36 0 chr12 72212527 72212637 -71573818 - L3 LINE CR1 -157 1420 1307 473 314 52 9 chr12 72212829 72213039 -71573416 - MIR SINE MIR -3 259 41 2224 101 3 3 chr12 72213092 72213390 -71573065 + AluSc SINE Alu 1 298 -11 237 345 67 0 chr12 72213470 72213589 -71572866 - MARNA DNA Mariner -117 469 343 252 0 0 0 chr12 72214198 72214226 -71572229 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 291 181 0 0 chr12 72214496 72214568 -71571887 + T-rich Low_complexity Low_complexity 1 72 0 182 356 96 9 chr12 72214980 72215095 -71571360 - L2 LINE L2 -4 3309 3185 260 254 0 0 chr12 72216706 72216765 -71569690 - L2 LINE L2 0 3313 3255 582 181 20 5 chr12 72216765 72216969 -71569486 + CT-rich Low_complexity Low_complexity 1 207 0 441 0 0 0 chr12 72217217 72217266 -71569189 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 225 108 0 0 chr12 72217631 72217668 -71568787 + (A)n Simple_repeat Simple_repeat 1 37 0 193 172 31 31 chr12 72220211 72220275 -71566180 + CT-rich Low_complexity Low_complexity 3 66 0 1950 127 0 0 chr12 72220615 72220882 -71565573 + AluSx SINE Alu 1 267 -45 378 245 109 5 chr12 72220894 72221086 -71565369 - L1M4 LINE L1 -945 5201 4990 * 4288 248 41 35 chr12 72221073 72222739 -71563716 - L1MEc LINE L1 -2223 3992 2317 2831 230 27 10 chr12 72222737 72223602 -71562853 - L1MEc LINE L1 -4946 1450 572 * 1224 264 42 29 chr12 72223614 72224133 -71562322 - L1MC5 LINE L1 -465 7496 6971 2190 103 3 3 chr12 72225249 72225541 -71560914 - AluSc SINE Alu -17 292 1 1839 157 3 53 chr12 72225568 72225886 -71560569 + AluSx SINE Alu 1 302 -10 1912 163 3 23 chr12 72226010 72226359 -71560096 + L1MA4 LINE L1 1253 1594 -4971 * 13745 174 45 21 chr12 72226355 72230509 -71555946 + L1MA4 LINE L1 3226 7467 -252 519 129 0 0 chr12 72230518 72230611 -71555844 + L1MA4 LINE L1 7622 7714 -5 640 544 0 0 chr12 72231182 72231362 -71555093 + T-rich Low_complexity Low_complexity 1 180 0 4208 70 50 30 chr12 72231950 72232546 -71553909 + LTR14B LTR ERVK 1 608 0 359 270 90 18 chr12 72232781 72232892 -71553563 - L2 LINE L2 0 3313 3195 2233 99 10 13 chr12 72232901 72233214 -71553241 + AluSq SINE Alu 1 312 -1 1610 140 55 18 chr12 72233652 72233980 -71552475 + Tigger2 DNA MER2_type 17 356 -2362 324 140 0 0 chr12 72233981 72234031 -71552424 - Tigger2 DNA MER2_type -1587 1131 1082 13997 132 24 14 chr12 72234117 72236448 -71550007 + Tigger2 DNA MER2_type 356 2708 -10 2377 83 0 0 chr12 72237258 72237559 -71548896 + AluY SINE Alu 1 301 -10 300 344 8 16 chr12 72238218 72238340 -71548115 + MIR3 SINE MIR 77 197 -11 430 279 99 112 chr12 72238716 72238934 -71547521 + L2 LINE L2 2836 3055 -258 1939 135 55 19 chr12 72238934 72239296 -71547159 + THE1C LTR MaLR 1 375 0 430 279 99 112 chr12 72239296 72239560 -71546895 + L2 LINE L2 3055 3312 -1 364 252 198 13 chr12 72242292 72242530 -71543925 + L2 LINE L2 2989 3270 -43 2073 107 14 0 chr12 72243217 72243526 -71542929 + AluSx SINE Alu 1 313 0 248 331 131 8 chr12 72243639 72243769 -71542686 - L2 LINE L2 -8 3264 3119 304 182 0 91 chr12 72243855 72243932 -71542523 + L2 LINE L2 3002 3071 -201 405 385 57 4 chr12 72244155 72244399 -71542056 - L3 LINE CR1 -2 1575 1319 200 361 0 0 chr12 72244698 72244781 -71541674 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 347 298 187 44 chr12 72244933 72245249 -71541206 - L1MC/D LINE L1 -2167 5641 5281 807 249 42 53 chr12 72245888 72246153 -71540302 + L2 LINE L2 3052 3313 0 559 292 19 34 chr12 72246689 72246898 -71539557 + MLT1K LTR MaLR 188 393 -195 778 323 96 16 chr12 72246904 72247269 -71539186 + L2 LINE L2 2010 2403 -911 689 300 82 0 chr12 72247294 72247527 -71538928 + MIR SINE MIR 11 262 0 1023 308 104 45 chr12 72247552 72248318 -71538137 + L2 LINE L2 2431 3225 -88 333 351 53 15 chr12 72248488 72248619 -71537836 + L2 LINE L2 3136 3271 -1 215 301 97 43 chr12 72249309 72249402 -71537053 + L2 LINE L2 3214 3311 -2 294 274 151 67 chr12 72249812 72250039 -71536416 - L2 LINE L2 0 3313 3056 2355 87 3 3 chr12 72250039 72250338 -71536117 + AluY SINE Alu 1 299 -12 294 274 151 67 chr12 72250338 72250395 -71536060 - L2 LINE L2 -257 3056 3005 294 259 26 9 chr12 72251004 72251120 -71535335 - MER103 DNA DNA -13 153 36 35 63 0 0 chr12 72251995 72252058 -71534397 + AT_rich Low_complexity Low_complexity 1 63 0 216 341 11 11 chr12 72252863 72252954 -71533501 + MIR3 SINE MIR 101 191 -17 2906 285 74 35 chr12 72253177 72254287 -71532168 + L2 LINE L2 7 1159 -2155 1901 148 0 0 chr12 72254486 72254764 -71531691 - AluJb SINE Alu -24 288 11 607 284 15 0 chr12 72254770 72254922 -71531533 - MIR SINE MIR -59 149 38 234 247 0 0 chr12 72254970 72255063 -71531392 + A-rich Low_complexity Low_complexity 1 93 0 209 180 20 0 chr12 72255791 72255841 -71530614 + CT-rich Low_complexity Low_complexity 2 52 0 727 169 23 15 chr12 72256047 72256177 -71530278 - FLAM_A SINE Alu -2 131 1 502 200 192 0 chr12 72256405 72256530 -71529925 + MIR SINE MIR 101 249 -13 1057 196 83 52 chr12 72256671 72256997 -71529458 + MLT1C LTR MaLR 132 467 0 4043 145 66 80 chr12 72257666 72258003 -71528452 - L1MC2 LINE L1 -20 6324 5984 488 158 0 42 chr12 72258003 72258098 -71528357 - AluJb SINE Alu -30 282 192 4043 145 66 80 chr12 72258098 72258832 -71527623 - L1MC2 LINE L1 -360 5984 5175 1752 80 92 0 chr12 72258834 72259084 -71527371 - AluY SINE Alu -1 310 38 442 331 40 98 chr12 72259100 72259340 -71527115 - L2 LINE L2 -9 3263 3042 2231 95 3 33 chr12 72259340 72259644 -71526811 + AluSx SINE Alu 1 295 -17 442 331 40 98 chr12 72259644 72259699 -71526756 - L2 LINE L2 -230 3042 2985 272 216 0 0 chr12 72260253 72260304 -71526151 - LTR33A LTR ERVL 0 523 473 377 241 92 0 chr12 72260556 72260643 -71525812 - MLT2E LTR ERVL -505 123 29 191 350 20 0 chr12 72261040 72261140 -71525315 - L2 LINE L2 -1020 2294 2193 2647 39 0 0 chr12 72261140 72261449 -71525006 + AluY SINE Alu 1 309 -2 1053 258 124 31 chr12 72262250 72262871 -71523584 + L2 LINE L2 2606 3276 -37 4277 152 82 10 chr12 72262880 72263758 -71522697 - L1MC1 LINE L1 0 6333 5393 243 296 0 0 chr12 72263937 72264008 -71522447 + MLT1K LTR MaLR 518 588 0 955 284 30 6 chr12 72264220 72264551 -71521904 + LTR16C LTR ERVL 150 488 -3 500 210 242 68 chr12 72264669 72264888 -71521567 - MIR SINE MIR 0 262 6 236 321 75 28 chr12 72265355 72265461 -71520994 - L2 LINE L2 -21 3251 3141 6127 107 8 0 chr12 72266414 72267700 -71518755 - L1PA10 LINE L1 -8 6160 4866 216 0 0 0 chr12 72268024 72268048 -71518407 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2186 114 0 3 chr12 72268243 72268540 -71517915 - AluSg SINE Alu -14 296 1 1405 206 24 38 chr12 72268573 72268864 -71517591 - AluJo SINE Alu -25 287 1 21 36 0 0 chr12 72268864 72268892 -71517563 + AT_rich Low_complexity Low_complexity 1 28 0 887 157 29 0 chr12 72268894 72269034 -71517421 - FRAM SINE Alu -13 163 20 525 258 129 48 chr12 72269092 72269363 -71517092 - MLT1J1 LTR MaLR -44 402 110 201 132 0 0 chr12 72269662 72269700 -71516755 + (T)n Simple_repeat Simple_repeat 1 38 0 529 296 112 0 chr12 72270227 72270406 -71516049 + MIR SINE MIR 13 211 -51 2369 89 3 0 chr12 72271145 72271447 -71515008 - AluSq SINE Alu 0 313 11 2401 225 27 15 chr12 72271643 72272209 -71514246 + MER77 LTR ERV1 53 603 -19 2635 266 130 53 chr12 72272232 72273562 -71512893 - HAL1 LINE L1 -48 2459 880 2100 138 0 0 chr12 72273562 72273852 -71512603 - AluSx SINE Alu -22 290 1 2635 266 130 53 chr12 72273852 72274794 -71511661 - HAL1 LINE L1 -1627 880 12 768 291 37 8 chr12 72275065 72275309 -71511146 - MIR SINE MIR 0 262 12 335 258 60 66 chr12 72275380 72275547 -71510908 + L1ME4a LINE L1 5955 6120 -1 2041 95 0 134 chr12 72276055 72276414 -71510041 - AluSx SINE Alu -1 311 1 436 298 53 48 chr12 72276500 72276688 -71509767 - MIR3 SINE MIR -1 207 19 543 250 7 35 chr12 72276863 72277007 -71509448 + MER117 DNA MER1_type 51 190 -7 830 221 12 6 chr12 72278271 72278443 -71508012 - MER45A DNA AcHobo 0 178 6 22 0 0 0 chr12 72279460 72279482 -71506973 + AT_rich Low_complexity Low_complexity 1 22 0 202 371 24 24 chr12 72279805 72279929 -71506526 - L2 LINE L2 -223 3049 2926 2401 50 9 59 chr12 72279962 72280284 -71506171 + AluY SINE Alu 1 306 -5 645 290 19 10 chr12 72280307 72280514 -71505941 - MIR SINE MIR 0 262 54 482 266 0 0 chr12 72280748 72280857 -71505598 + MER33 DNA MER1_type 1 109 -215 2386 104 0 7 chr12 72280862 72281170 -71505285 - AluSg SINE Alu -2 308 3 804 167 54 31 chr12 72281193 72281415 -71505040 + MER33 DNA MER1_type 98 324 0 270 56 0 0 chr12 72282956 72282992 -71503463 + (CA)n Simple_repeat Simple_repeat 1 36 0 338 326 72 28 chr12 72284149 72284330 -71502125 + MIR3 SINE MIR 10 198 -10 296 232 81 30 chr12 72285589 72285688 -71500767 + MER5B DNA MER1_type 1 104 -74 332 291 76 25 chr12 72285777 72285963 -71500492 - MIR SINE MIR -8 200 16 26 74 0 0 chr12 72286363 72286417 -71500038 + AT_rich Low_complexity Low_complexity 1 54 0 351 352 39 0 chr12 72287305 72287476 -71498979 + MIR SINE MIR 11 187 -67 * 810 276 70 79 chr12 72287475 72287943 -71498512 - L2 LINE L2 0 3313 2850 793 299 220 9 chr12 72287931 72288272 -71498183 - L2 LINE L2 -2888 426 14 * 1910 208 45 51 chr12 72289405 72289911 -71496544 - MLT1D LTR MaLR -2 503 1 2170 202 121 4 chr12 72290114 72290658 -71495797 + L1MC4 LINE L1 6471 7078 -964 1969 268 36 12 chr12 72290663 72291306 -71495149 + L1MC4 LINE L1 7240 7897 -145 1751 134 0 29 chr12 72291346 72291621 -71494834 - AluJb SINE Alu -19 293 27 501 332 126 17 chr12 72291762 72292165 -71494290 + MLT1G1 LTR MaLR 16 444 -146 2269 135 0 0 chr12 72292183 72292495 -71493960 + AluSx SINE Alu 1 312 0 2527 216 124 85 chr12 72292511 72293872 -71492583 + L1MCa LINE L1 3 1581 -4983 1728 183 34 66 chr12 72293872 72294281 -71492174 + MSTD LTR MaLR 1 396 0 2527 216 124 85 chr12 72294281 72294396 -71492059 + L1MCa LINE L1 1581 1690 -4874 1476 188 75 54 chr12 72294402 72294843 -71491612 - MLT1D LTR MaLR 0 505 56 2621 224 59 3 chr12 72294843 72295594 -71490861 + L1M4 LINE L1 4156 4948 -1198 368 242 147 63 chr12 72296450 72296735 -71489720 - MER110 LTR ERV1 -6 485 177 256 186 29 128 chr12 72297727 72297829 -71488626 - MIR SINE MIR -52 210 119 301 225 106 92 chr12 72298493 72298635 -71487820 + MIR SINE MIR 119 262 0 182 307 80 13 chr12 72302357 72302432 -71484023 + MIR SINE MIR 131 210 -52 475 272 7 20 chr12 72302433 72302580 -71483875 - MER20B DNA MER1_type -598 185 41 255 235 0 102 chr12 72304598 72304696 -71481759 + MIR SINE MIR 156 243 -19 332 282 205 8 chr12 72304899 72305016 -71481439 - MIR SINE MIR -79 183 44 237 224 0 17 chr12 72306432 72306490 -71479965 + L1M3c LINE L1 958 1014 -6084 1116 283 32 13 chr12 72307347 72308021 -71478434 + L1M3c LINE L1 1614 2328 -4770 * 20635 157 24 11 chr12 72308019 72311631 -71474824 + L1MA2 LINE L1 23 3588 -4135 2269 101 3 0 chr12 72311631 72311927 -71474528 + AluSp SINE Alu 1 297 -16 203 59 0 29 chr12 72311930 72311964 -71474491 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 20635 157 24 11 chr12 72311964 72313460 -71472995 + L1MA2 LINE L1 3589 5065 -2658 1946 137 3 0 chr12 72313460 72313744 -71472711 + AluSx SINE Alu 25 309 -3 20635 157 24 11 chr12 72313744 72316237 -71470218 + L1MA2 LINE L1 5065 7721 -2 3894 214 39 64 chr12 72316260 72316599 -71469856 + L1M1 LINE L1 2375 2721 -4844 1960 156 0 43 chr12 72316599 72316925 -71469530 + AluJb SINE Alu 1 312 0 3894 214 39 64 chr12 72316925 72318808 -71467647 + L1M1 LINE L1 2721 4527 -3038 383 238 14 61 chr12 72319017 72319164 -71467291 - L3 LINE CR1 -634 943 804 372 297 59 68 chr12 72319168 72319390 -71467065 + L2 LINE L2 2923 3142 -171 211 339 0 0 chr12 72319416 72319481 -71466974 + L2 LINE L2 3249 3313 0 22 56 0 0 chr12 72319602 72319638 -71466817 + AT_rich Low_complexity Low_complexity 1 36 0 498 292 172 35 chr12 72319858 72320451 -71466004 - L2 LINE L2 -830 2484 1811 503 286 25 49 chr12 72320521 72320724 -71465731 - L3 LINE CR1 -608 969 772 592 268 47 47 chr12 72322076 72322289 -71464166 - MIR SINE MIR -14 248 36 15044 132 18 14 chr12 72323349 72325545 -71460910 + Tigger1 DNA MER2_type 2 2209 -209 1678 189 0 7 chr12 72325545 72325831 -71460624 - AluJo SINE Alu -18 294 11 15044 132 18 14 chr12 72325831 72326040 -71460415 + Tigger1 DNA MER2_type 2209 2416 -2 244 272 94 23 chr12 72327077 72327203 -71459252 + MIR SINE MIR 9 140 -68 265 369 21 35 chr12 72327480 72327621 -71458834 - L2 LINE L2 0 3272 3134 327 287 123 8 chr12 72328242 72328364 -71458091 + MIR3 SINE MIR 9 144 -64 274 151 43 11 chr12 72328429 72328522 -71457933 + (TA)n Simple_repeat Simple_repeat 1 96 0 23 33 0 0 chr12 72328566 72328596 -71457859 + AT_rich Low_complexity Low_complexity 1 30 0 1450 195 12 100 chr12 72328636 72329046 -71457409 + MLT1A2 LTR MaLR 1 374 0 2349 67 0 0 chr12 72329919 72330269 -71456186 - AluY SINE Alu 0 350 1 803 168 0 0 chr12 72330284 72330415 -71456040 - FLAM_C SINE Alu 0 133 3 740 293 141 10 chr12 72331533 72331997 -71454458 - L2 LINE L2 0 3313 2783 710 305 57 59 chr12 72332205 72332966 -71453489 - L2 LINE L2 0 3272 2517 201 315 22 43 chr12 72333238 72333330 -71453125 - L2 LINE L2 -31 3282 3193 317 293 64 0 chr12 72333819 72333959 -71452496 + L1ME LINE L1 5543 5691 -430 396 0 0 0 chr12 72334359 72334403 -71452052 + (CA)n Simple_repeat Simple_repeat 2 45 0 687 213 93 85 chr12 72334454 72334712 -71451743 - MIR SINE MIR -1 261 2 328 330 78 11 chr12 72334736 72334915 -71451540 + MIR SINE MIR 53 243 -19 1156 169 42 17 chr12 72335685 72335922 -71450533 - MLT1D LTR MaLR -260 245 3 235 336 227 27 chr12 72335926 72336920 -71449535 - L2 LINE L2 -595 2719 1527 277 290 14 0 chr12 72337100 72337169 -71449286 + MIR SINE MIR 45 114 -148 1475 169 0 0 chr12 72337169 72337394 -71449061 + AluJb SINE Alu 71 295 -17 2176 141 0 0 chr12 72337869 72338168 -71448287 - AluSx SINE Alu -13 299 1 43 56 0 0 chr12 72338202 72338273 -71448182 + AT_rich Low_complexity Low_complexity 1 71 0 310 250 28 0 chr12 72338285 72338357 -71448098 - L1MC4 LINE L1 -1339 6703 6630 421 241 40 81 chr12 72339156 72339330 -71447125 - L2 LINE L2 -1 3312 3146 199 330 55 0 chr12 72339572 72339663 -71446792 + L2 LINE L2 2978 3073 -199 233 235 0 0 chr12 72339828 72339879 -71446576 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 504 0 0 0 chr12 72340463 72340519 -71445936 + (TG)n Simple_repeat Simple_repeat 2 57 0 359 203 48 13 chr12 72340792 72340971 -71445484 - MER20B DNA MER1_type -46 737 515 356 248 119 80 chr12 72341267 72341493 -71444962 + MER20B DNA MER1_type 30 264 -519 654 245 176 42 chr12 72341682 72342107 -71444348 - L1M4 LINE L1 -2931 3215 2734 456 165 104 17 chr12 72342107 72342220 -71444235 + MLT1C LTR MaLR 1 123 -344 4105 141 84 28 chr12 72342220 72343038 -71443417 - MER4D LTR ERV1 -2 870 7 1032 213 132 11 chr12 72343083 72343370 -71443085 + MLT1C LTR MaLR 144 465 -2 569 171 0 45 chr12 72343958 72344069 -71442386 - Tigger7 DNA MER2_type 0 2487 2382 1174 189 8 42 chr12 72344082 72344320 -71442135 - Tigger7 DNA MER2_type -503 230 1 383 339 145 34 chr12 72344637 72345162 -71441293 - L2 LINE L2 -557 2757 2175 1054 162 29 33 chr12 72345190 72345400 -71441055 - MER3 DNA MER1_type 0 209 1 309 209 217 17 chr12 72345568 72345683 -71440772 - MIR SINE MIR -76 186 49 293 351 117 5 chr12 72345742 72345930 -71440525 - L2 LINE L2 -1267 2047 1839 340 252 39 47 chr12 72346132 72346259 -71440196 + MIR SINE MIR 66 191 -71 341 312 70 65 chr12 72349360 72349575 -71436880 - MIR SINE MIR -45 217 2 744 289 68 58 chr12 72349851 72350002 -71436453 + L1ME LINE L1 4475 4623 -1539 207 0 0 0 chr12 72350002 72350025 -71436430 + (TTG)n Simple_repeat Simple_repeat 2 24 0 744 289 68 58 chr12 72350025 72351037 -71435418 + L1ME LINE L1 4623 5661 -501 204 304 0 0 chr12 72351038 72351094 -71435361 - MER5A DNA MER1_type -6 183 128 2263 284 80 42 chr12 72351175 72352326 -71434129 - L2 LINE L2 0 3313 2113 395 263 131 15 chr12 72352334 72352593 -71433862 + L1ME LINE L1 1450 1738 -4658 25 0 0 0 chr12 72353225 72353250 -71433205 + AT_rich Low_complexity Low_complexity 1 25 0 616 312 72 51 chr12 72353261 72354244 -71432211 + L1ME LINE L1 3908 4911 -1304 365 264 41 36 chr12 72354532 72354798 -71431657 + L1ME LINE L1 5230 5493 -738 21 57 0 0 chr12 72354990 72355025 -71431430 + AT_rich Low_complexity Low_complexity 1 35 0 869 237 177 48 chr12 72355040 72355436 -71431019 - LTR16A1 LTR ERVL -10 447 1 295 182 11 11 chr12 72355436 72355524 -71430931 + (CA)n Simple_repeat Simple_repeat 1 88 0 661 316 134 47 chr12 72356265 72356567 -71429888 + L2 LINE L2 2148 2422 -892 2632 130 6 3 chr12 72356567 72356928 -71429527 + THE1B LTR MaLR 1 362 -2 11607 101 14 30 chr12 72356929 72358536 -71427919 + THE1B-int LTR MaLR 1 1580 0 2665 120 6 3 chr12 72358538 72358896 -71427559 + THE1B LTR MaLR 3 361 -3 661 316 134 47 chr12 72358896 72359246 -71427209 + L2 LINE L2 2422 2862 -452 632 113 35 0 chr12 72359255 72359370 -71427085 - LTR9B LTR ERV1 -80 564 446 417 309 116 42 chr12 72359462 72359669 -71426786 + L2 LINE L2 3005 3240 -73 249 33 0 0 chr12 72359669 72359699 -71426756 + (TG)n Simple_repeat Simple_repeat 1 30 0 417 309 116 42 chr12 72359699 72359776 -71426679 + L2 LINE L2 3240 3310 -3 201 293 0 0 chr12 72361964 72362022 -71424433 + MIR SINE MIR 73 130 -78 398 298 43 64 chr12 72362237 72362472 -71423983 + MLT1J LTR MaLR 233 462 -49 1680 71 0 0 chr12 72363075 72363272 -71423183 - MER107 DNA MER1_type 0 197 1 360 333 17 0 chr12 72363462 72363579 -71422876 - L3 LINE CR1 -67 1510 1392 241 287 120 27 chr12 72363669 72363819 -71422636 + MIR SINE MIR 28 191 -71 513 253 114 6 chr12 72363820 72363986 -71422469 - MIR SINE MIR 0 262 79 244 329 24 0 chr12 72364029 72364114 -71422341 - 5S rRNA rRNA -33 88 2 261 321 70 89 chr12 72364202 72364408 -71422047 - L3 LINE CR1 -352 1225 1025 2136 117 7 7 chr12 72364408 72364716 -71421739 - AluSx SINE Alu -4 308 1 261 321 70 89 chr12 72364716 72364811 -71421644 - L3 LINE CR1 -552 1025 930 241 239 56 28 chr12 72364871 72364942 -71421513 + L1ME LINE L1 5619 5691 -499 * 3153 214 62 23 chr12 72364938 72365718 -71420737 + L1MA9 LINE L1 5465 6274 -38 270 0 0 0 chr12 72365967 72365997 -71420458 + (CA)n Simple_repeat Simple_repeat 2 31 0 305 310 9 18 chr12 72366747 72366860 -71419595 - MIR SINE MIR -6 256 145 46 54 0 0 chr12 72367966 72368040 -71418415 + AT_rich Low_complexity Low_complexity 1 74 0 796 210 134 9 chr12 72368286 72368510 -71417945 + MIR SINE MIR 11 262 0 1115 162 96 0 chr12 72368561 72368759 -71417696 + MER20 DNA MER1_type 2 218 -1 360 320 66 44 chr12 72368986 72369351 -71417104 + L1ME4a LINE L1 5510 5882 -239 25 51 0 0 chr12 72369856 72369895 -71416560 + AT_rich Low_complexity Low_complexity 1 39 0 1716 158 4 4 chr12 72370064 72370342 -71416113 - AluJo SINE Alu -1 311 34 362 132 0 0 chr12 72371013 72371066 -71415389 + LTR68 LTR ERV1 1 53 -687 * 1099 194 66 3 chr12 72371064 72371449 -71415006 + LTR68 LTR ERV1 294 734 -6 360 240 132 62 chr12 72371632 72371920 -71414535 + L1MC/D LINE L1 5278 5585 -2200 447 208 16 62 chr12 72371928 72372057 -71414398 + MLT1E2 LTR MaLR 1 194 -460 1152 313 55 2 chr12 72372072 72372490 -71413965 + L1M2 LINE L1 11 450 -6399 316 313 88 73 chr12 72372511 72372703 -71413752 + L1M2 LINE L1 586 780 -6069 340 376 34 8 chr12 72372847 72372964 -71413491 + L1M2 LINE L1 666 785 -6064 1294 232 0 52 chr12 72372986 72373292 -71413163 + L1PA15-16 LINE L1 444 733 -6116 7010 227 14 43 chr12 72373770 72376874 -71409581 + L1PA15-16 LINE L1 1436 4494 -2355 * 16919 179 12 24 chr12 72376873 72380916 -71405539 + L1P3 LINE L1 24 4174 -2287 35099 57 11 3 chr12 72381123 72386337 -71400118 - L1PA7 LINE L1 -1 6153 907 180 143 0 0 chr12 72386681 72386709 -71399746 - L2 LINE L2 -14 3299 3272 308 161 0 54 chr12 72387507 72387563 -71398892 + MSTA LTR MaLR 1 53 -373 844 76 0 0 chr12 72387563 72387668 -71398787 + AluSg/x SINE Alu 194 298 -11 2102 160 79 3 chr12 72387668 72387818 -71398637 + MSTA LTR MaLR 46 183 -245 186 43 0 0 chr12 72387818 72387841 -71398614 + (TC)n Simple_repeat Simple_repeat 1 23 0 2102 160 79 3 chr12 72387841 72388046 -71398409 + MSTA LTR MaLR 183 428 0 3979 118 59 66 chr12 72389891 72390587 -71395868 + LTR8 LTR ERV1 1 691 0 3441 47 18 9 chr12 72390612 72391058 -71395397 - LTR7 LTR ERV1 0 450 1 7273 23 13 2 chr12 72392615 72394104 -71392351 - L1PA3 LINE L1 -64 6091 4583 1637 115 4 48 chr12 72394222 72394491 -71391964 - L1P LINE L1 -4468 1678 1422 4570 137 15 3 chr12 72394491 72395214 -71391241 - L1P LINE L1 -5407 739 8 1375 144 152 44 chr12 72395316 72395586 -71390869 + AluJb SINE Alu 1 299 -3 565 296 89 0 chr12 72396318 72396531 -71389924 - MIR SINE MIR 0 262 31 188 353 35 35 chr12 72396658 72396774 -71389681 + L2 LINE L2 3153 3268 -4 765 298 82 36 chr12 72398148 72398315 -71388140 - L1M4 LINE L1 -3027 3119 2961 1021 173 0 58 chr12 72398315 72398488 -71387967 + FRAM SINE Alu 1 163 -3 765 298 82 36 chr12 72398488 72398904 -71387551 - L1M4 LINE L1 -3185 2961 2509 1864 143 14 3 chr12 72398927 72399221 -71387234 - AluJo SINE Alu -14 298 2 1124 238 54 0 chr12 72399491 72399796 -71386659 - MER58B DNA MER1_type -2 339 1 305 286 11 48 chr12 72400042 72400263 -71386192 + G-rich Low_complexity Low_complexity 1 212 0 217 81 27 68 chr12 72400296 72400370 -71386085 + (CGGGG)n Simple_repeat Simple_repeat 4 74 0 239 208 0 30 chr12 72400381 72400482 -71385973 + G-rich Low_complexity Low_complexity 1 98 0 35 0 0 0 chr12 72400482 72400517 -71385938 + GC_rich Low_complexity Low_complexity 1 35 0 5595 174 33 3 chr12 72400547 72402013 -71384442 + L1MA4 LINE L1 4794 6297 -3 473 264 84 57 chr12 72402021 72402388 -71384067 + HAL1 LINE L1 1116 1492 -1015 4807 131 95 6 chr12 72402534 72403420 -71383035 - HERVH LTR ERV1 -6725 988 24 217 274 69 59 chr12 72403829 72403931 -71382524 - MIR SINE MIR -6 256 154 291 264 20 23 chr12 72404603 72404864 -71381591 + CT-rich Low_complexity Low_complexity 1 260 0 255 358 8 8 chr12 72404868 72404988 -71381467 + C-rich Low_complexity Low_complexity 2 121 0 282 318 19 9 chr12 72405010 72405117 -71381338 + CT-rich Low_complexity Low_complexity 4 111 0 * 446 358 6 6 chr12 72405019 72405195 -71381260 + C-rich Low_complexity Low_complexity 2 177 0 416 328 36 16 chr12 72405881 72406073 -71380382 - MIR SINE MIR -54 208 13 308 339 0 24 chr12 72406339 72406463 -71379992 + C-rich Low_complexity Low_complexity 2 122 0 286 198 18 27 chr12 72406465 72406576 -71379879 + CT-rich Low_complexity Low_complexity 1 110 0 426 323 0 0 chr12 72406586 72406713 -71379742 + C-rich Low_complexity Low_complexity 1 127 0 192 242 22 11 chr12 72406814 72406905 -71379550 + C-rich Low_complexity Low_complexity 2 93 0 1171 134 0 35 chr12 72407045 72407079 -71379376 - AluSq SINE Alu -148 165 131 2323 83 0 49 chr12 72407079 72407406 -71379049 - AluY SINE Alu 0 311 1 1171 134 0 35 chr12 72407406 72407542 -71378913 - AluSq SINE Alu -182 131 1 1261 268 46 19 chr12 72407543 72408199 -71378256 + L2 LINE L2 2543 3216 -97 2092 132 7 3 chr12 72408206 72408373 -71378082 - AluSx SINE Alu -14 298 128 279 0 0 0 chr12 72408373 72408404 -71378051 + (TG)n Simple_repeat Simple_repeat 2 32 0 2092 132 7 3 chr12 72408404 72408532 -71377923 - AluSx SINE Alu -184 128 2 319 321 29 43 chr12 72409177 72409317 -71377138 + MIR SINE MIR 19 156 -106 455 250 43 0 chr12 72409397 72409513 -71376942 + MIR SINE MIR 138 258 -4 243 103 0 0 chr12 72409559 72409598 -71376857 + (CA)n Simple_repeat Simple_repeat 2 40 0 357 280 0 8 chr12 72409715 72409833 -71376622 - FLAM_A SINE Alu 0 133 17 234 193 0 0 chr12 72409999 72410056 -71376399 + C-rich Low_complexity Low_complexity 1 57 0 472 350 0 0 chr12 72410360 72410537 -71375918 + G-rich Low_complexity Low_complexity 1 177 0 22 35 0 0 chr12 72410922 72410951 -71375504 + AT_rich Low_complexity Low_complexity 1 29 0 563 274 23 70 chr12 72411178 72411522 -71374933 - MLT1J LTR MaLR -18 493 110 26 50 0 0 chr12 72462705 72462745 -71323710 + AT_rich Low_complexity Low_complexity 1 40 0 465 200 0 17 chr12 72463231 72463346 -71323109 - L1MB1 LINE L1 -5 6163 6051 916 238 16 53 chr12 72465438 72465757 -71320698 + Charlie2 DNA MER1_type 5 311 -2471 798 177 65 0 chr12 72465921 72466107 -71320348 + Charlie2a DNA MER1_type 1467 1664 -1198 454 221 50 29 chr12 72466115 72466255 -71320200 + Charlie2a DNA MER1_type 2718 2860 -2 355 271 105 15 chr12 72467227 72467360 -71319095 - L2 LINE L2 0 3313 3169 306 253 60 0 chr12 72467505 72467588 -71318867 + MIR SINE MIR 40 127 -135 618 249 169 42 chr12 72467599 72467846 -71318609 + L2 LINE L2 2961 3258 -55 5027 72 14 1 chr12 72467846 72468498 -71317957 - PABL_A LTR ERV1 0 660 1 618 249 169 42 chr12 72468498 72468563 -71317892 + L2 LINE L2 3258 3313 0 277 264 44 0 chr12 72468948 72469039 -71317416 - MIR SINE MIR -15 247 153 200 35 35 0 chr12 72470820 72470849 -71315606 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 513 276 156 13 chr12 72472351 72472576 -71313879 + L1MC/D LINE L1 5531 5787 -2021 654 230 185 0 chr12 72472640 72472977 -71313478 - LTR50 LTR ERVL -12 783 295 183 264 56 28 chr12 72472986 72473058 -71313397 - L2 LINE L2 -47 3266 3193 200 256 70 58 chr12 72473785 72473871 -71312584 - L2 LINE L2 -63 3250 3164 2066 92 0 4 chr12 72475201 72475486 -71310969 + AluSg SINE Alu 20 303 0 2342 89 0 0 chr12 72475665 72475958 -71310497 + AluSg SINE Alu 1 293 -17 276 289 163 7 chr12 72476925 72477060 -71309395 - L2 LINE L2 0 3272 3117 2337 101 0 3 chr12 72477231 72477537 -71308918 - AluSx SINE Alu -7 305 1 248 83 0 0 chr12 72479884 72479920 -71306535 - U2 snRNA snRNA -152 36 1 31 44 0 0 chr12 72482807 72482852 -71303603 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 72485307 72485328 -71301127 + AT_rich Low_complexity Low_complexity 1 21 0 2340 58 27 14 chr12 72485734 72486029 -71300426 - AluY SINE Alu -12 299 1 6527 246 103 17 chr12 72486727 72489062 -71297393 - L2 LINE L2 -35 3278 730 296 296 34 0 chr12 72489062 72489150 -71297305 - L2 LINE L2 -3006 308 218 209 232 179 0 chr12 72489167 72489223 -71297232 + L2 LINE L2 3245 3310 -3 1907 151 7 0 chr12 72489618 72489902 -71296553 + AluSx SINE Alu 1 286 -26 185 438 0 12 chr12 72490331 72490411 -71296044 - L2 LINE L2 -60 3212 3134 583 314 185 19 chr12 72490519 72491109 -71295346 - L2 LINE L2 -211 3061 2370 1047 263 117 44 chr12 72491119 72491463 -71294992 - L2 LINE L2 -1 3312 2926 2338 106 0 0 chr12 72491463 72491764 -71294691 + AluSx SINE Alu 1 301 -11 1047 263 117 44 chr12 72491764 72491872 -71294583 - L2 LINE L2 -387 2926 2827 1596 163 7 46 chr12 72492169 72492475 -71293980 - AluJo SINE Alu -18 294 1 6126 175 43 14 chr12 72492479 72494687 -71291768 - L1PA16 LINE L1 -16 6150 3862 1180 181 0 17 chr12 72494687 72494925 -71291530 + L1 LINE L1 3586 3819 -2327 788 114 15 53 chr12 72495564 72495695 -71290760 - FLAM_C SINE Alu -5 128 3 729 215 12 52 chr12 72495699 72495871 -71290584 - AluSc SINE Alu -12 297 133 463 274 120 49 chr12 72495915 72496665 -71289790 - L1ME4a LINE L1 -19 6102 5289 180 0 0 0 chr12 72496924 72496944 -71289511 + (T)n Simple_repeat Simple_repeat 1 20 0 458 135 27 0 chr12 72497461 72497535 -71288920 - MER20 DNA MER1_type -112 107 32 1000 230 55 7 chr12 72497537 72497846 -71288609 - HAL1 LINE L1 -916 1591 1268 1323 175 19 5 chr12 72497847 72498058 -71288397 + AluSx SINE Alu 1 214 -98 265 146 223 0 chr12 72498069 72498172 -71288283 - HAL1 LINE L1 -1228 1279 1154 6039 152 55 24 chr12 72498185 72498224 -71288231 - L1PBb LINE L1 -3013 3190 3154 2030 130 46 3 chr12 72498224 72498570 -71287885 - L1PB2 LINE L1 -2 6149 5789 6039 152 55 24 chr12 72498570 72501172 -71285283 - L1PBb LINE L1 -3049 3154 467 1909 154 16 0 chr12 72501178 72501496 -71284959 - L1PBb LINE L1 -5862 342 20 1219 263 30 12 chr12 72501490 72501916 -71284539 - L1PBa LINE L1 -5504 1359 926 * 298 202 96 11 chr12 72501954 72502048 -71284407 - HAL1 LINE L1 -1429 1078 977 746 327 65 7 chr12 72502063 72502497 -71283958 - HAL1 LINE L1 -1961 546 88 22 0 0 0 chr12 72502670 72502692 -71283763 + AT_rich Low_complexity Low_complexity 1 22 0 241 300 75 0 chr12 72503012 72503132 -71283323 - MIR SINE MIR -71 191 63 2403 87 3 0 chr12 72503299 72503608 -71282847 - AluSg SINE Alu 0 310 1 2953 135 15 2 chr12 72503887 72504347 -71282108 - MER83-int LTR ERV1 -3798 487 22 335 61 0 20 chr12 72504346 72504395 -71282060 - MER83-int LTR ERV1 -4226 59 12 * 1144 132 0 16 chr12 72504395 72504584 -71281871 - MER83 LTR ERV1 0 448 263 289 329 121 7 chr12 72505230 72505379 -71281076 + MIR SINE MIR 2 167 -95 183 80 0 0 chr12 72505417 72505442 -71281013 + (ATG)n Simple_repeat Simple_repeat 3 27 0 32 86 0 0 chr12 72505601 72505682 -71280773 + AT_rich Low_complexity Low_complexity 1 81 0 1279 120 111 14 chr12 72506518 72506726 -71279729 - MER30 DNA MER1_type -2 228 1 360 235 175 33 chr12 72507237 72507420 -71279035 - L3 LINE CR1 -113 1464 1256 280 242 0 16 chr12 72508444 72508506 -71277949 + MIR SINE MIR 18 78 -130 188 275 29 29 chr12 72508506 72508575 -71277880 + MIR3 SINE MIR 131 199 -9 301 143 31 102 chr12 72511664 72511762 -71274693 + L1MCa LINE L1 1974 2064 -4362 2029 137 5 83 chr12 72512176 72512524 -71273931 + L1MA8 LINE L1 5902 6213 -78 3256 131 22 48 chr12 72512524 72513110 -71273345 + L1MA6 LINE L1 5728 6298 -2 2029 137 5 83 chr12 72513110 72513184 -71273271 + L1MA8 LINE L1 6213 6291 0 312 355 45 0 chr12 72513439 72513549 -71272906 + L2 LINE L2 3148 3262 -10 1935 152 7 0 chr12 72513879 72514176 -71272279 + AluSx SINE Alu 1 299 -13 2384 67 0 3 chr12 72514511 72514809 -71271646 + AluY SINE Alu 1 297 -14 981 279 19 5 chr12 72514938 72515251 -71271204 - LTR16A LTR ERVL 0 450 90 335 320 93 24 chr12 72516430 72516677 -71269778 - MLT2E LTR ERVL -14 614 351 478 202 16 101 chr12 72516726 72516855 -71269600 - MLT2E LTR ERVL -479 149 32 410 266 84 19 chr12 72516924 72517078 -71269377 - MIR SINE MIR -94 168 5 681 217 67 57 chr12 72518398 72518712 -71267743 + HAL1 LINE L1 1033 1349 -1158 716 256 84 32 chr12 72518722 72519007 -71267448 - L2 LINE L2 0 3313 3014 405 248 110 9 chr12 72519031 72519140 -71267315 + L2 LINE L2 3194 3313 0 1264 291 213 6 chr12 72519157 72519703 -71266752 - L2 LINE L2 -355 2959 2301 2196 113 3 16 chr12 72520119 72520429 -71266026 - AluSx SINE Alu -6 306 1 253 316 36 62 chr12 72520505 72520730 -71265725 + L2 LINE L2 2061 2279 -1035 529 215 154 60 chr12 72520746 72520979 -71265476 + MIR SINE MIR 8 262 0 907 185 88 32 chr12 72521237 72521486 -71264969 + MER41B LTR ERV1 287 549 -86 1225 211 0 9 chr12 72521497 72521720 -71264735 + MLT1A1 LTR MaLR 145 365 0 1353 289 11 3 chr12 72521729 72522089 -71264366 - HsTC2 DNA Tc2 -1533 365 3 420 231 29 10 chr12 72522089 72522189 -71264266 - MER103 DNA DNA -38 128 27 2261 123 0 0 chr12 72522460 72522762 -71263693 + AluSx SINE Alu 1 302 -10 1215 123 0 0 chr12 72522762 72522924 -71263531 + AluSg/x SINE Alu 134 295 -17 293 272 9 44 chr12 72523073 72523187 -71263268 + MIR SINE MIR 118 227 -35 1575 164 51 48 chr12 72524530 72524841 -71261614 - AluJo SINE Alu 0 312 1 252 176 118 0 chr12 72525382 72525450 -71261005 - MIR SINE MIR -63 199 124 641 277 38 11 chr12 72526023 72526207 -71260248 + MIR SINE MIR 32 220 -42 346 276 144 57 chr12 72526418 72526559 -71259896 + MIR SINE MIR 8 169 -93 2170 100 14 3 chr12 72526559 72526848 -71259607 - AluSp SINE Alu -21 292 1 346 276 144 57 chr12 72526848 72526936 -71259519 + MIR SINE MIR 169 248 -14 280 211 173 29 chr12 72527002 72527106 -71259349 + L1ME LINE L1 5762 5880 -241 23 33 0 0 chr12 72527109 72527139 -71259316 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr12 72527145 72527172 -71259283 + (CA)n Simple_repeat Simple_repeat 2 28 0 1581 119 167 8 chr12 72527444 72527715 -71258740 - AluSg SINE Alu 0 300 1 688 161 77 42 chr12 72528481 72528624 -71257831 - MIR SINE MIR -27 235 88 1860 145 17 14 chr12 72528816 72529113 -71257342 - AluSx SINE Alu -14 298 1 28 29 0 0 chr12 72530908 72530943 -71255512 + AT_rich Low_complexity Low_complexity 1 35 0 781 189 33 115 chr12 72532025 72532161 -71254294 + MIR SINE MIR 40 149 -113 2373 80 0 26 chr12 72532161 72532474 -71253981 - AluSp SINE Alu -8 305 1 781 189 33 115 chr12 72532474 72532580 -71253875 + MIR SINE MIR 149 262 0 389 123 0 31 chr12 72532689 72532754 -71253701 - HsTC2 DNA Tc2 -46 1852 1790 * 811 194 56 22 chr12 72532748 72532927 -71253528 - HsTC2 DNA Tc2 -1343 555 371 890 164 19 6 chr12 72532927 72533086 -71253369 + MLT1A1 LTR MaLR 1 161 -204 667 142 19 9 chr12 72533086 72533192 -71253263 + MER41B-int LTR ERV1 5840 5946 0 2535 130 5 15 chr12 72533192 72533593 -71252862 + MER41B LTR ERV1 1 397 -238 1938 143 3 7 chr12 72533795 72534089 -71252366 - AluJb SINE Alu -19 293 1 264 30 0 0 chr12 72534514 72534547 -71251908 + (GA)n Simple_repeat Simple_repeat 2 34 0 387 310 44 0 chr12 72536209 72536322 -71250133 + L2 LINE L2 3139 3256 -16 284 290 70 10 chr12 72536342 72536442 -71250013 + L2 LINE L2 3200 3305 -8 2702 229 120 17 chr12 72536745 72537606 -71248849 - L1ME3A LINE L1 -8 6162 5219 266 275 206 23 chr12 72538078 72538209 -71248246 - L2 LINE L2 0 3313 3159 497 304 6 1 chr12 72538991 72539152 -71247303 + L1MC/D LINE L1 5481 5645 -545 527 304 111 41 chr12 72540059 72540818 -71245637 + L1ME3A LINE L1 4405 5110 -1060 2097 132 30 0 chr12 72540818 72541121 -71245334 + AluSx SINE Alu 1 312 0 527 304 111 41 chr12 72541121 72541724 -71244731 + L1ME3A LINE L1 5110 5881 -289 355 244 58 0 chr12 72542125 72542211 -71244244 - L2 LINE L2 -10 3303 3213 1052 249 72 10 chr12 72544879 72545324 -71241131 - L1ME1 LINE L1 -4 6162 5634 247 237 247 11 chr12 72545769 72545862 -71240593 - MIR SINE MIR -64 144 30 248 224 239 0 chr12 72547379 72547446 -71239009 - MER63 DNA MER1_type 0 1060 978 460 181 0 0 chr12 72547453 72547525 -71238930 - MER63 DNA MER1_type -89 747 676 2204 88 0 7 chr12 72548905 72549225 -71237230 + AluSg SINE Alu 1 318 0 7697 45 6 0 chr12 72549267 72550722 -71235733 - L1PA5 LINE L1 -1 6153 4696 22 0 0 0 chr12 72550906 72550928 -71235527 + AT_rich Low_complexity Low_complexity 1 22 0 1736 125 38 24 chr12 72551840 72552128 -71234327 - AluSx SINE Alu -20 292 1 473 242 124 6 chr12 72552180 72552358 -71234097 + MIR SINE MIR 64 262 0 840 221 85 30 chr12 72553114 72553313 -71233142 - MER63A DNA MER1_type 0 210 1 1885 150 3 7 chr12 72553631 72553931 -71232524 + AluJb SINE Alu 1 299 -13 326 278 70 35 chr12 72554352 72554467 -71231988 + MIR SINE MIR 13 131 -131 25 0 0 0 chr12 72555094 72555119 -71231336 + AT_rich Low_complexity Low_complexity 1 25 0 1706 150 3 36 chr12 72555315 72555622 -71230833 + AluJo SINE Alu 1 297 -15 278 163 11 152 chr12 72555775 72555806 -71230649 - MER116 DNA Mariner 0 80 46 2266 116 3 0 chr12 72555806 72556109 -71230346 + AluSx SINE Alu 1 304 -8 278 163 11 152 chr12 72556109 72556169 -71230286 - MER116 DNA Mariner -34 46 2 284 283 71 0 chr12 72556277 72556390 -71230065 - MIR SINE MIR -11 251 131 308 318 57 57 chr12 72556435 72556627 -71229828 - MIR SINE MIR -18 244 53 533 145 0 12 chr12 72557567 72557641 -71228814 + FLAM SINE Alu 42 116 -196 279 0 0 0 chr12 72557641 72557672 -71228783 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 524 290 97 55 chr12 72557758 72557996 -71228459 - MIR SINE MIR -13 249 2 25 65 0 0 chr12 72558471 72558517 -71227938 + AT_rich Low_complexity Low_complexity 1 46 0 1606 225 176 23 chr12 72558573 72559186 -71227269 - L1MC4a LINE L1 -1756 6052 5346 293 351 34 15 chr12 72559454 72559719 -71226736 - L1MC4a LINE L1 -1134 5012 4743 21 89 0 0 chr12 72561019 72561075 -71225380 + AT_rich Low_complexity Low_complexity 1 56 0 1510 6 0 11 chr12 72561204 72561385 -71225070 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1993 109 11 0 chr12 72561399 72561665 -71224790 - AluSq SINE Alu -44 269 1 511 289 72 24 chr12 72561837 72562003 -71224452 + MIR3 SINE MIR 16 189 -19 437 309 0 9 chr12 72562022 72562132 -71224323 - L2 LINE L2 -16 3297 3189 240 350 42 46 chr12 72562139 72562379 -71224076 + L2 LINE L2 1756 1994 -1320 3185 227 48 2 chr12 72562447 72563068 -71223387 - MER82 DNA MER2_type -1 652 3 1822 79 0 4 chr12 72563272 72563500 -71222955 + AluSq SINE Alu 73 299 -14 187 274 141 44 chr12 72563859 72563994 -71222461 - MIR SINE MIR -2 260 113 338 345 112 36 chr12 72564617 72565083 -71221372 + L2 LINE L2 2407 2907 -407 2167 138 0 3 chr12 72565135 72565447 -71221008 - AluSx SINE Alu -1 311 1 333 195 172 39 chr12 72566998 72567126 -71219329 - L3 LINE CR1 -16 1561 1417 297 416 13 7 chr12 72567075 72567224 -71219231 + L2 LINE L2 2720 2869 -445 * 671 224 28 79 chr12 72567240 72567375 -71219080 - L2 LINE L2 -7 3306 3184 2358 109 0 6 chr12 72567375 72567687 -71218768 + AluSx SINE Alu 1 310 -2 671 224 28 79 chr12 72567687 72567765 -71218690 - L2 LINE L2 -129 3184 3104 2200 197 161 8 chr12 72567766 72568258 -71218197 + MLT1F1 LTR MaLR 1 567 0 309 261 33 11 chr12 72568304 72568396 -71218059 - L2 LINE L2 -252 3061 2968 * 455 310 42 125 chr12 72568395 72568866 -71217589 + L2 LINE L2 2840 3271 -1 228 259 194 19 chr12 72568889 72568997 -71217458 + MIR SINE MIR 94 220 -42 213 296 12 62 chr12 72569023 72569104 -71217351 - L3 LINE CR1 -127 1450 1374 312 205 24 12 chr12 72569239 72569322 -71217133 - L1MA10 LINE L1 -10 6324 6241 2203 113 0 3 chr12 72570716 72571008 -71215447 - AluSc SINE Alu -18 291 1 267 31 0 0 chr12 72571913 72571945 -71214510 + (TG)n Simple_repeat Simple_repeat 1 32 0 391 290 57 16 chr12 72572305 72572429 -71214026 + L2 LINE L2 3142 3270 -2 642 241 0 22 chr12 72572503 72572640 -71213815 - MLT1A1 LTR MaLR 0 365 232 1145 168 21 98 chr12 72572642 72573074 -71213381 - MER4B LTR ERV1 0 610 322 582 248 156 70 chr12 72574933 72575161 -71211294 - MARNA DNA Mariner -8 578 312 1171 202 113 57 chr12 72575161 72575443 -71211012 + AluJo SINE Alu 1 298 -4 582 248 156 70 chr12 72575443 72575541 -71210914 - MARNA DNA Mariner -274 312 224 598 289 6 6 chr12 72575558 72575724 -71210731 + MIR SINE MIR 48 213 -49 229 328 0 0 chr12 72575790 72575854 -71210601 + (TAG)n Simple_repeat Simple_repeat 2 65 0 196 393 33 16 chr12 72577070 72577192 -71209263 - L2 LINE L2 -6 3266 3143 345 282 190 18 chr12 72577300 72577488 -71208967 - MIR SINE MIR -40 222 3 1207 276 141 18 chr12 72578351 72579155 -71207300 + L2 LINE L2 2404 3309 -4 289 210 24 105 chr12 72580606 72580730 -71205725 - L1MC4 LINE L1 -1321 6721 6608 201 147 0 0 chr12 72580733 72580767 -71205688 + (TA)n Simple_repeat Simple_repeat 1 34 0 588 146 114 37 chr12 72580801 72580951 -71205504 + L1ME LINE L1 5526 5683 -438 1337 270 85 54 chr12 72581156 72581874 -71204581 + L2 LINE L2 1980 2719 -595 319 268 49 16 chr12 72581894 72582017 -71204438 + L1ME4a LINE L1 5990 6116 -5 705 215 105 6 chr12 72582188 72582360 -71204095 - MER117 DNA MER1_type -4 193 5 1217 52 0 39 chr12 72582508 72582663 -71203792 - L1PA10 LINE L1 -1 6167 6019 2417 74 3 0 chr12 72583791 72584090 -71202365 - AluSp SINE Alu -9 304 5 208 292 149 3 chr12 72585507 72585691 -71200764 + L2 LINE L2 2735 2959 -313 554 197 44 71 chr12 72585807 72585990 -71200465 - L2 LINE L2 -69 3244 3067 398 245 71 57 chr12 72586018 72586230 -71200225 + L2 LINE L2 3098 3312 -1 228 213 0 0 chr12 72586230 72586291 -71200164 + GA-rich Low_complexity Low_complexity 1 61 0 291 140 0 0 chr12 72586408 72586458 -71199997 + (TG)n Simple_repeat Simple_repeat 2 51 0 197 284 40 14 chr12 72586559 72586633 -71199822 - MIR SINE MIR -128 134 59 608 277 96 52 chr12 72586780 72587243 -71199212 + L1ME4a LINE L1 5496 5984 -137 2207 92 7 3 chr12 72587243 72587537 -71198918 + AluSx SINE Alu 1 295 -17 608 277 96 52 chr12 72587537 72587572 -71198883 + L1ME4a LINE L1 5984 6016 -105 35 41 0 0 chr12 72587599 72587648 -71198807 + AT_rich Low_complexity Low_complexity 1 49 0 252 237 0 17 chr12 72587676 72587735 -71198720 - L2 LINE L2 -20 3252 3195 319 211 8 113 chr12 72588283 72588324 -71198131 + L1ME4a LINE L1 6003 6047 -74 2587 41 0 31 chr12 72588324 72588644 -71197811 - AluY SINE Alu 0 311 2 319 211 8 113 chr12 72588644 72588735 -71197720 + L1ME4a LINE L1 6047 6121 0 469 187 66 0 chr12 72589022 72589113 -71197342 - L2 LINE L2 0 3313 3217 198 0 0 0 chr12 72591470 72591492 -71194963 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 72591598 72591620 -71194835 + AT_rich Low_complexity Low_complexity 1 22 0 415 314 151 5 chr12 72591638 72591823 -71194632 - MIR SINE MIR -34 228 17 460 279 146 6 chr12 72591948 72592106 -71194349 + MER5A DNA MER1_type 10 189 0 1520 189 66 48 chr12 72592114 72592448 -71194007 + MER58B DNA MER1_type 1 340 -1 205 358 65 16 chr12 72592472 72592595 -71193860 - L2 LINE L2 -2854 460 332 242 252 261 9 chr12 72593012 72593123 -71193332 + MER5A DNA MER1_type 51 189 0 365 91 0 18 chr12 72595247 72595302 -71191153 - MLT1L LTR MaLR -10 605 552 1195 245 133 49 chr12 72595306 72595840 -71190615 - MLT1G LTR MaLR -1 589 11 426 283 45 89 chr12 72595854 72596190 -71190265 - MLT1J LTR MaLR -77 434 114 483 33 0 0 chr12 72598277 72598338 -71188117 + (CA)n Simple_repeat Simple_repeat 1 61 0 186 273 91 0 chr12 72598348 72598392 -71188063 - L2 LINE L2 -10 3262 3215 671 305 74 0 chr12 72598413 72598616 -71187839 + MIR SINE MIR 31 248 -14 197 289 206 21 chr12 72598732 72598829 -71187626 - L2 LINE L2 -182 3090 2976 2412 90 3 0 chr12 72598836 72599137 -71187318 + AluSx SINE Alu 1 302 -10 502 246 0 25 chr12 72599405 72599523 -71186932 - MER103 DNA DNA -32 134 20 281 260 48 10 chr12 72600506 72600610 -71185845 + L2 LINE L2 2165 2272 -1042 224 361 24 0 chr12 72600650 72600733 -71185722 + L2 LINE L2 2264 2348 -966 413 303 66 76 chr12 72600762 72601234 -71185221 + MLT1J LTR MaLR 27 493 -18 1234 295 128 21 chr12 72601260 72601669 -71184786 + L2 LINE L2 2322 2686 -627 1279 192 36 139 chr12 72601669 72601988 -71184467 + MLT1A2 LTR MaLR 1 269 -105 1418 205 18 3 chr12 72601988 72602271 -71184184 + AluJo SINE Alu 2 288 -24 1279 192 36 139 chr12 72602271 72602368 -71184087 + MLT1A2 LTR MaLR 269 374 0 1234 295 128 21 chr12 72602368 72602840 -71183615 + L2 LINE L2 2686 3313 0 36 23 0 0 chr12 72602840 72602883 -71183572 + AT_rich Low_complexity Low_complexity 1 43 0 1258 213 100 3 chr12 72603147 72603438 -71183017 + Charlie1 DNA MER1_type 1609 1927 -834 * 1945 193 38 38 chr12 72603425 72603822 -71182633 + Charlie1 DNA MER1_type 2248 2647 -114 2384 109 0 0 chr12 72603822 72604126 -71182329 + AluSg SINE Alu 1 304 -6 1945 193 38 38 chr12 72604126 72604226 -71182229 + Charlie1 DNA MER1_type 2646 2745 -16 1553 166 53 33 chr12 72605234 72605310 -71181145 + L1MB8 LINE L1 5798 5871 -307 2488 51 3 0 chr12 72605310 72605603 -71180852 + AluY SINE Alu 1 294 -17 1553 166 53 33 chr12 72605603 72605863 -71180592 + L1MB8 LINE L1 5871 6141 -37 21 0 0 0 chr12 72606420 72606441 -71180014 + AT_rich Low_complexity Low_complexity 1 21 0 748 250 79 14 chr12 72606441 72606657 -71179798 - MIR SINE MIR -30 232 3 536 280 93 28 chr12 72606852 72606913 -71179542 - MIR SINE MIR -36 226 170 1973 196 19 11 chr12 72606913 72607275 -71179180 - MLT1A1 LTR MaLR 0 365 1 536 280 93 28 chr12 72607275 72607395 -71179060 - MIR SINE MIR -92 170 33 578 315 84 42 chr12 72607466 72607704 -71178751 + MIR SINE MIR 7 254 -8 424 310 76 0 chr12 72607802 72607947 -71178508 - MIR3 SINE MIR -15 193 38 2109 143 0 3 chr12 72608008 72608316 -71178139 + AluJb SINE Alu 1 307 -5 1502 147 136 4 chr12 72609765 72610030 -71176425 - AluJb SINE Alu -12 300 1 346 205 90 0 chr12 72610965 72611043 -71175412 + AluSg/x SINE Alu 118 202 -98 849 123 7 29 chr12 72611043 72611181 -71175274 + AluSg/x SINE Alu 166 300 -12 304 306 87 46 chr12 72611328 72611501 -71174954 - MER5A DNA MER1_type -3 186 7 2638 27 7 3 chr12 72611533 72611834 -71174621 + AluY SINE Alu 1 302 -9 3355 255 30 17 chr12 72611864 72612859 -71173596 + L2 LINE L2 1853 2860 -454 222 265 0 0 chr12 72612949 72612998 -71173457 + L2 LINE L2 2994 3042 -271 2479 80 0 0 chr12 72613002 72613301 -71173154 - AluSg1 SINE Alu -10 299 1 1608 223 112 47 chr12 72613318 72613424 -71173031 + MLT1F1 LTR MaLR 1 99 -468 3569 22 0 10 chr12 72613424 72613841 -71172614 - L1PA4 LINE L1 0 6155 5743 1608 223 112 47 chr12 72613841 72614269 -71172186 + MLT1F1 LTR MaLR 99 567 0 523 245 96 44 chr12 72614269 72614379 -71172076 + L2 LINE L2 3051 3154 -159 312 27 0 0 chr12 72614379 72614416 -71172039 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 523 245 96 44 chr12 72614416 72614554 -71171901 + L2 LINE L2 3154 3312 -1 241 257 168 10 chr12 72614577 72614678 -71171777 + MIR SINE MIR 132 248 -14 279 253 22 44 chr12 72615414 72615505 -71170950 + L2 LINE L2 3184 3272 0 447 295 67 14 chr12 72615646 72615856 -71170599 + MIR SINE MIR 40 260 -2 313 281 43 36 chr12 72616059 72616198 -71170257 - MIR SINE MIR -74 188 49 2077 113 3 0 chr12 72616377 72616683 -71169772 + AluSx SINE Alu 1 307 0 191 253 11 35 chr12 72616986 72617073 -71169382 - MIR SINE MIR -6 256 172 283 333 56 41 chr12 72617357 72617408 -71169047 + MLT1K LTR MaLR 312 361 -227 2665 147 51 2 chr12 72617408 72617858 -71168597 + MER101 LTR ERV1 3 474 0 283 333 56 41 chr12 72617858 72618073 -71168382 + MLT1K LTR MaLR 361 582 -6 395 269 79 109 chr12 72618074 72618532 -71167923 - MLT1J1 LTR MaLR -2 444 1 266 256 153 9 chr12 72618535 72618656 -71167799 - MIR SINE MIR -63 145 24 1400 264 124 43 chr12 72619226 72620006 -71166449 - L1MC4a LINE L1 -813 5333 5220 591 211 26 76 chr12 72621457 72621617 -71164838 - MLT1L LTR MaLR -57 542 321 543 191 74 62 chr12 72621647 72621809 -71164646 - MER63A DNA MER1_type -3 207 44 307 248 235 87 chr12 72621838 72622149 -71164306 - MLT1L LTR MaLR -258 357 1 722 218 0 0 chr12 72622287 72622420 -71164035 - FLAM_A SINE Alu 0 133 1 2432 86 0 0 chr12 72622428 72622729 -71163726 - AluSc SINE Alu -8 301 1 229 94 31 5 chr12 72623185 72623344 -71163111 + AluJo SINE Alu 1 250 -53 1256 116 0 83 chr12 72623344 72623409 -71163046 + AluJo SINE Alu 85 154 -158 2208 100 0 0 chr12 72623409 72623689 -71162766 + AluSx SINE Alu 18 297 -15 1256 116 0 83 chr12 72623689 72623839 -71162616 + AluJo SINE Alu 154 282 -30 23 0 0 0 chr12 72623839 72623862 -71162593 + AT_rich Low_complexity Low_complexity 1 23 0 797 276 83 82 chr12 72624076 72624627 -71161828 - L1MC4 LINE L1 -1 8041 7487 1171 286 78 14 chr12 72624627 72625113 -71161342 - LTR33 LTR ERVL -3 518 2 797 276 83 82 chr12 72625113 72625467 -71160988 - L1MC4 LINE L1 -555 7487 7135 2466 72 0 7 chr12 72625516 72625823 -71160632 + AluSc SINE Alu 1 305 -4 276 149 0 0 chr12 72626023 72626070 -71160385 + (TCC)n Simple_repeat Simple_repeat 3 49 0 820 281 100 26 chr12 72626097 72626303 -71160152 - L1MC4 LINE L1 -881 7002 6813 1700 166 43 7 chr12 72626303 72626604 -71159851 + AluJb SINE Alu 1 312 0 820 281 100 26 chr12 72626604 72626691 -71159764 - L1MC4 LINE L1 -1070 6813 6734 207 0 0 0 chr12 72626691 72626714 -71159741 + (CA)n Simple_repeat Simple_repeat 1 23 0 820 281 100 26 chr12 72626714 72626761 -71159694 - L1MC4 LINE L1 -1149 6734 6554 22 35 0 0 chr12 72626834 72626863 -71159592 + AT_rich Low_complexity Low_complexity 1 29 0 2661 52 0 0 chr12 72627397 72627703 -71158752 - AluY SINE Alu -5 306 1 2233 89 0 11 chr12 72627706 72628029 -71158426 - AluSg SINE Alu 0 320 1 275 270 0 0 chr12 72628622 72628685 -71157770 + MIR3 SINE MIR 111 173 -35 456 317 40 10 chr12 72628923 72628992 -71157463 + MIR SINE MIR 49 114 -148 2101 147 19 38 chr12 72628992 72629071 -71157384 + MLT1A1 LTR MaLR 5 84 -281 2318 95 0 0 chr12 72629071 72629365 -71157090 + AluY SINE Alu 1 294 -17 2101 147 19 38 chr12 72629365 72629653 -71156802 + MLT1A1 LTR MaLR 84 365 0 456 317 40 10 chr12 72629653 72629785 -71156670 + MIR SINE MIR 114 256 -6 345 220 73 18 chr12 72629860 72629969 -71156486 - LTR67 LTR ERVL -10 547 433 252 0 0 0 chr12 72630736 72630764 -71155691 + (TG)n Simple_repeat Simple_repeat 2 29 0 186 71 0 0 chr12 72630874 72630902 -71155553 + (A)n Simple_repeat Simple_repeat 1 28 0 445 290 33 11 chr12 72630910 72631093 -71155362 + MIR3 SINE MIR 14 200 -8 375 264 92 35 chr12 72631110 72631284 -71155171 - L2 LINE L2 -177 3136 2953 509 293 58 21 chr12 72631638 72631880 -71154575 - MER112 DNA MER1_type -9 251 1 1329 118 86 33 chr12 72631950 72632195 -71154260 + AluJb SINE Alu 1 258 -54 1175 57 23 11 chr12 72632203 72632380 -71154075 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 672 193 161 107 chr12 72632624 72632904 -71153551 - MER102b DNA MER1_type -10 331 37 353 256 38 15 chr12 72632919 72633052 -71153403 + L1ME4a LINE L1 5985 6120 -1 1063 92 0 0 chr12 72633952 72634083 -71152372 - AluSg SINE Alu -179 131 1 207 296 0 0 chr12 72634313 72634367 -71152088 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 1717 175 0 30 chr12 72634395 72634692 -71151763 + AluJo SINE Alu 1 288 -24 343 218 138 0 chr12 72634829 72634916 -71151539 - MIR SINE MIR -2 260 162 276 317 17 8 chr12 72635081 72635201 -71151254 + GA-rich Low_complexity Low_complexity 3 123 0 2265 79 0 0 chr12 72636349 72636686 -71149769 + L1PA8 LINE L1 5841 6177 0 30 27 0 0 chr12 72636709 72636746 -71149709 + AT_rich Low_complexity Low_complexity 1 37 0 2193 127 0 3 chr12 72636801 72637101 -71149354 + AluSx SINE Alu 1 299 -13 332 228 55 55 chr12 72637578 72637648 -71148807 - MER94 DNA DNA -6 128 56 2388 106 0 0 chr12 72637648 72637950 -71148505 + AluSx SINE Alu 1 302 -10 332 228 55 55 chr12 72637950 72638006 -71148449 - MER94 DNA DNA -77 57 2 231 290 100 30 chr12 72638230 72638330 -71148125 + MIR SINE MIR 48 154 -108 946 263 146 39 chr12 72638425 72638756 -71147699 - L2 LINE L2 0 3313 3019 1917 160 0 0 chr12 72638756 72639067 -71147388 - AluSx SINE Alu 0 311 1 946 263 146 39 chr12 72639067 72639093 -71147362 - L2 LINE L2 -294 3019 2997 2136 54 12 0 chr12 72639093 72639351 -71147104 + AluY SINE Alu 39 299 -12 946 263 146 39 chr12 72639351 72639677 -71146778 - L2 LINE L2 -316 2997 2550 804 234 23 62 chr12 72640123 72640379 -71146076 - MIR SINE MIR -2 260 15 1607 156 0 37 chr12 72640898 72641168 -71145287 + AluJo SINE Alu 2 261 -51 353 173 0 0 chr12 72641168 72641249 -71145206 + AluJ/FRAM SINE Alu 231 311 0 2281 100 0 0 chr12 72642030 72642319 -71144136 + AluSx SINE Alu 1 289 -23 202 316 0 18 chr12 72642417 72642474 -71143981 - L3b LINE CR1 -8 1575 1520 456 312 59 5 chr12 72642668 72642870 -71143585 - MIR SINE MIR -48 214 2 2081 124 0 0 chr12 72642941 72643246 -71143209 - AluSx SINE Alu 0 305 1 1134 228 154 9 chr12 72643251 72643615 -71142840 + MER74B LTR ERVL 34 439 -119 529 225 27 0 chr12 72644342 72644453 -71142002 + MER81 DNA DNA 1 114 0 366 246 56 49 chr12 72645336 72645478 -71140977 - L2 LINE L2 -36 3277 3135 1984 130 0 11 chr12 72645537 72645875 -71140580 - AluSx SINE Alu 0 335 1 1987 162 0 0 chr12 72646297 72646593 -71139862 + AluSx SINE Alu 3 298 -14 246 336 60 15 chr12 72648163 72648297 -71138158 - MIR SINE MIR -87 175 36 188 350 0 0 chr12 72649013 72649073 -71137382 - L2 LINE L2 -9 3304 3245 593 266 8 0 chr12 72649363 72649487 -71136968 - MER94 DNA DNA -3 131 7 606 328 44 13 chr12 72649675 72649904 -71136551 + Charlie8 DNA MER1_type 1 236 -2181 2116 206 130 14 chr12 72649919 72650405 -71136050 + MLT1F LTR MaLR 1 542 0 779 251 79 63 chr12 72650809 72651319 -71135136 - MLT1L LTR MaLR -8 607 26 234 297 54 45 chr12 72651335 72651446 -71135009 + MIR SINE MIR 148 259 -3 3012 137 53 9 chr12 72652197 72652722 -71133733 + L1MB3 LINE L1 5636 6183 0 2037 148 7 0 chr12 72652964 72653262 -71133193 - AluSx SINE Alu -12 300 1 302 281 111 60 chr12 72654246 72654463 -71131992 - L3b LINE CR1 -33 1550 1323 472 311 89 41 chr12 72654685 72655023 -71131432 - L2 LINE L2 -37 3235 2882 184 200 100 33 chr12 72655319 72655379 -71131076 + MIR3 SINE MIR 91 154 -54 213 218 0 0 chr12 72655526 72655581 -71130874 + T-rich Low_complexity Low_complexity 1 55 0 696 154 7 15 chr12 72655587 72655723 -71130732 - L1MB4 LINE L1 0 6180 6046 2296 117 0 0 chr12 72655733 72656032 -71130423 - AluSx SINE Alu -13 299 1 3617 168 9 1 chr12 72656289 72656943 -71129512 + L1MA5A LINE L1 3649 4307 -1839 2721 80 8 0 chr12 72656943 72657294 -71129161 - THE1A LTR MaLR 0 355 2 11210 97 14 3 chr12 72657295 72658871 -71127584 - THE1A-int LTR MaLR 0 1580 1 2893 88 6 0 chr12 72658871 72659224 -71127231 - THE1A LTR MaLR 0 355 1 4877 164 33 25 chr12 72659224 72660451 -71126004 + L1MA5A LINE L1 4303 5525 -743 1218 154 0 0 chr12 72660451 72660626 -71125829 - AluSg/x SINE Alu -12 298 124 4855 131 14 1 chr12 72660654 72661385 -71125070 + L1MA5A LINE L1 5558 6297 0 210 309 151 8 chr12 72661697 72661823 -71124632 - MIR SINE MIR -2 260 117 827 169 128 23 chr12 72661962 72662134 -71124321 + AluJo SINE Alu 120 309 -3 279 259 62 0 chr12 72663087 72663168 -71123287 + L2 LINE L2 3180 3265 -48 304 202 226 143 chr12 72663258 72663426 -71123029 - MLT2F LTR ERVL 0 663 482 628 295 23 17 chr12 72663465 72663638 -71122817 - MLT2F LTR ERVL -294 369 196 691 155 72 109 chr12 72663689 72663722 -71122733 - MLT1E3 LTR MaLR -386 238 205 1591 80 0 15 chr12 72663722 72663922 -71122533 - MER107 DNA MER1_type 0 197 1 691 155 72 109 chr12 72663922 72664081 -71122374 - MLT1E3 LTR MaLR -419 205 53 569 277 0 14 chr12 72664087 72664235 -71122220 - MLT2F LTR ERVL -517 146 1 958 245 79 0 chr12 72664630 72664845 -71121610 - MLT1A1 LTR MaLR 0 365 134 3050 108 12 0 chr12 72664845 72665253 -71121202 + MLT2A2 LTR ERVL 1 413 -40 483 165 32 6 chr12 72665253 72665411 -71121044 + (TA)n Simple_repeat Simple_repeat 2 163 0 425 36 36 0 chr12 72665419 72665474 -71120981 + MLT2A2 LTR ERVL 397 453 0 659 132 9 9 chr12 72665484 72665590 -71120865 - MLT1A1 LTR MaLR -259 106 1 409 248 207 21 chr12 72667652 72667797 -71118658 + MER5A DNA MER1_type 18 189 0 183 80 0 0 chr12 72667815 72667840 -71118615 + (T)n Simple_repeat Simple_repeat 1 25 0 1423 124 14 28 chr12 72667848 72668065 -71118390 - L1PB4 LINE L1 -4 6152 5939 190 318 79 0 chr12 72668229 72668292 -71118163 - MIR SINE MIR -174 88 21 274 238 119 30 chr12 72668758 72668859 -71117596 + MIR SINE MIR 39 148 -114 284 233 22 56 chr12 72671810 72671900 -71114555 + L2 LINE L2 3221 3307 -6 6979 123 19 13 chr12 72672224 72672772 -71113683 + L1MA2 LINE L1 4889 5432 -872 2297 113 0 0 chr12 72672772 72673072 -71113383 + AluSx SINE Alu 1 300 -12 6979 123 19 13 chr12 72673072 72673931 -71112524 + L1MA2 LINE L1 5432 6304 0 189 182 0 0 chr12 72674347 72674402 -71112053 + (CTTA)n Simple_repeat Simple_repeat 1 55 0 2406 100 3 0 chr12 72674407 72674716 -71111739 - AluSx SINE Alu -2 310 1 23 0 0 0 chr12 72674868 72674891 -71111564 + AT_rich Low_complexity Low_complexity 1 23 0 835 183 8 0 chr12 72675138 72675269 -71111186 + FLAM_C SINE Alu 2 133 -10 1215 179 32 28 chr12 72675317 72675535 -71110920 - MER20 DNA MER1_type 0 219 1 186 43 0 0 chr12 72675555 72675578 -71110877 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1611 143 0 96 chr12 72675580 72675902 -71110553 - AluJo SINE Alu -21 291 1 592 218 157 20 chr12 72676019 72676216 -71110239 - MIR SINE MIR -27 235 12 251 309 103 0 chr12 72676239 72676336 -71110119 + MIR SINE MIR 38 144 -64 27 0 0 0 chr12 72676911 72676938 -71109517 + AT_rich Low_complexity Low_complexity 1 27 0 265 250 92 26 chr12 72677171 72677247 -71109208 + L2 LINE L2 3189 3269 -44 4353 218 16 34 chr12 72677295 72678159 -71108296 - MER4B-int LTR ERV1 -2710 4048 3201 2407 93 0 0 chr12 72678159 72678460 -71107995 - AluSq SINE Alu -12 301 1 4353 218 16 34 chr12 72678460 72678576 -71107879 - MER4B-int LTR ERV1 -3557 3201 3085 2614 202 78 42 chr12 72678621 72678684 -71107771 - MER21B LTR ERV1 -76 855 796 189 0 0 0 chr12 72678684 72678705 -71107750 + (CAATT)n Simple_repeat Simple_repeat 1 21 0 2614 202 78 42 chr12 72678705 72679331 -71107124 - MER21B LTR ERV1 -135 796 52 1785 119 0 0 chr12 72679379 72679615 -71106840 - AluSx SINE Alu -74 238 3 358 210 151 42 chr12 72679980 72680099 -71106356 + MIR SINE MIR 103 234 -28 2108 136 17 0 chr12 72680570 72680872 -71105583 + AluSx SINE Alu 1 307 -5 363 172 0 0 chr12 72680905 72680969 -71105486 - MLT1K LTR MaLR -2 586 523 201 378 10 0 chr12 72681243 72681341 -71105114 + L2 LINE L2 2966 3064 -208 829 299 130 35 chr12 72681532 72682024 -71104431 + HAL1 LINE L1 2 540 -1967 598 277 33 38 chr12 72682104 72682317 -71104138 - MIR SINE MIR -1 261 50 266 316 150 8 chr12 72682370 72682503 -71103952 - L2 LINE L2 0 3313 3162 283 361 135 18 chr12 72683866 72684207 -71102248 - L2 LINE L2 -346 2968 2588 2098 120 0 3 chr12 72684790 72685113 -71101342 - AluSq SINE Alu 0 322 1 1973 144 24 0 chr12 72685337 72685635 -71100820 + AluSx SINE Alu 1 305 -7 275 323 50 10 chr12 72685834 72685933 -71100522 + L2 LINE L2 3162 3264 -8 246 369 75 28 chr12 72687179 72687393 -71099062 - L2 LINE L2 -11 3261 3038 2139 126 7 3 chr12 72687895 72688204 -71098251 - AluSx SINE Alu -2 310 1 1050 130 13 0 chr12 72688525 72688679 -71097776 + L1PB4 LINE L1 6001 6156 0 1587 95 45 9 chr12 72690512 72690734 -71095721 - MER30 DNA MER1_type 0 230 1 1777 156 3 52 chr12 72690881 72691207 -71095248 - AluSx SINE Alu -2 310 1 195 42 0 0 chr12 72691551 72691575 -71094880 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 896 127 0 0 chr12 72691580 72691698 -71094757 - FLAM_C SINE Alu -15 118 1 2079 232 133 72 chr12 72691853 72693017 -71093438 + L2 LINE L2 2078 3313 0 222 319 85 0 chr12 72693542 72693636 -71092819 + MIR SINE MIR 82 183 -79 283 187 19 93 chr12 72693830 72693937 -71092518 - MIR SINE MIR -46 216 118 351 303 55 0 chr12 72694714 72694823 -71091632 - L2 LINE L2 0 3313 3199 594 181 76 0 chr12 72694970 72695075 -71091380 - MER81 DNA DNA -1 113 1 389 271 47 0 chr12 72695423 72695530 -71090925 - MLT1I LTR MaLR -103 306 195 281 136 0 0 chr12 72695608 72695652 -71090803 + MLT1I LTR MaLR 363 406 -3 1963 141 20 10 chr12 72695807 72696105 -71090350 + AluSx SINE Alu 1 301 -11 366 308 28 153 chr12 72699029 72699399 -71087056 - L2 LINE L2 -1 3271 2981 4577 22 0 0 chr12 72699399 72699889 -71086566 + SVA Other Other 897 1386 0 366 308 28 153 chr12 72699889 72700027 -71086428 - L2 LINE L2 -291 2981 2827 2361 83 3 37 chr12 72700279 72700603 -71085852 + AluSq SINE Alu 1 313 0 1245 236 71 14 chr12 72700793 72701158 -71085297 + L1ME3A LINE L1 4466 4851 -1295 974 166 12 12 chr12 72701169 72701332 -71085123 + FRAM SINE Alu 1 159 -17 2133 224 55 44 chr12 72701347 72701411 -71085044 + L1ME3A LINE L1 5128 5190 -980 1958 142 10 0 chr12 72701411 72701707 -71084748 + AluSx SINE Alu 1 299 -13 2133 224 55 44 chr12 72701707 72702440 -71084015 + L1ME3A LINE L1 5190 5946 -224 367 306 36 36 chr12 72702909 72703102 -71083353 + MIR SINE MIR 28 220 -42 2381 79 0 3 chr12 72703308 72703612 -71082843 - AluSc SINE Alu -6 303 1 290 237 13 0 chr12 72704358 72704434 -71082021 + L1ME3A LINE L1 5988 6064 -106 452 345 36 22 chr12 72704759 72704982 -71081473 - MIR SINE MIR -1 261 36 280 282 66 29 chr12 72704988 72705229 -71081226 - L1M4 LINE L1 -1599 4547 4298 237 281 221 43 chr12 72705413 72705716 -71080739 - L2 LINE L2 -347 2967 2611 337 323 56 16 chr12 72705753 72705813 -71080642 + MIR SINE MIR 19 75 -187 2357 92 3 3 chr12 72705813 72706117 -71080338 - AluSx SINE Alu -8 304 1 337 323 56 16 chr12 72706117 72706243 -71080212 + MIR SINE MIR 75 210 -52 4344 194 28 13 chr12 72706542 72707413 -71079042 + L1MB5 LINE L1 5283 6166 -8 21 0 0 0 chr12 72707413 72707434 -71079021 + AT_rich Low_complexity Low_complexity 1 21 0 242 301 27 27 chr12 72707838 72707911 -71078544 + L2 LINE L2 3150 3222 -50 1801 151 7 21 chr12 72708268 72708559 -71077896 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr12 72708656 72708679 -71077776 + AT_rich Low_complexity Low_complexity 1 23 0 673 268 106 4 chr12 72708932 72709167 -71077288 + MIR SINE MIR 3 261 -1 405 0 0 0 chr12 72709220 72709265 -71077190 + (CA)n Simple_repeat Simple_repeat 2 46 0 225 0 0 0 chr12 72709264 72709289 -71077166 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 215 333 139 9 chr12 72709663 72709771 -71076684 - L2 LINE L2 -1 3271 3150 1384 157 9 133 chr12 72709952 72710297 -71076158 + AluJo SINE Alu 1 302 0 387 331 78 26 chr12 72711420 72711574 -71074881 - MIR SINE MIR -80 182 21 820 275 20 36 chr12 72711713 72711960 -71074495 - MIR SINE MIR -18 244 2 330 219 41 0 chr12 72712119 72712192 -71074263 + MIR SINE MIR 40 115 -147 259 366 38 70 chr12 72712688 72712874 -71073581 - L2 LINE L2 -94 3178 2999 201 74 0 0 chr12 72714206 72714233 -71072222 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 229 311 67 22 chr12 72714395 72714485 -71071970 - MIR SINE MIR -50 212 119 349 259 24 0 chr12 72714846 72714931 -71071524 + MIR SINE MIR 71 157 -105 349 178 56 56 chr12 72714954 72715061 -71071394 - MIR SINE MIR -60 202 96 212 241 0 19 chr12 72715130 72715184 -71071271 + MIR SINE MIR 157 209 -53 209 268 42 28 chr12 72715717 72715788 -71070667 + MIR SINE MIR 126 197 -65 376 245 87 53 chr12 72716673 72716873 -71069582 - MIR SINE MIR -10 252 4 2380 91 3 7 chr12 72716954 72717262 -71069193 + AluSp SINE Alu 1 307 -6 1800 140 0 53 chr12 72717938 72718260 -71068195 + MER1B DNA MER1_type 35 339 0 199 387 35 42 chr12 72718543 72718685 -71067770 - L2 LINE L2 -33 3239 3099 3269 209 34 35 chr12 72718989 72719039 -71067416 - L1ME1 LINE L1 -5 6161 6112 2061 130 3 19 chr12 72719039 72719346 -71067109 + AluSx SINE Alu 1 302 -10 3269 209 34 35 chr12 72719346 72720380 -71066075 - L1ME1 LINE L1 -54 6112 5078 276 222 0 0 chr12 72720380 72720434 -71066021 + AluJ/monomer SINE Alu 1 54 -249 2416 185 51 54 chr12 72720434 72721173 -71065282 - L1ME1 LINE L1 -1270 4876 4140 2289 119 19 32 chr12 72721387 72721756 -71064699 - THE1B LTR MaLR 0 364 1 211 205 0 0 chr12 72722117 72722156 -71064299 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2063 128 7 7 chr12 72722331 72722628 -71063827 + AluSx SINE Alu 1 297 -15 2221 136 16 25 chr12 72723030 72723397 -71063058 - THE1B LTR MaLR 0 364 1 401 247 70 70 chr12 72723544 72723586 -71062869 + MIR3 SINE MIR 50 91 -117 852 263 148 47 chr12 72723586 72724141 -71062314 + MLT1L LTR MaLR 2 612 -3 401 247 70 70 chr12 72724141 72724256 -71062199 + MIR3 SINE MIR 90 207 -1 260 320 98 77 chr12 72724500 72724941 -71061514 - L2 LINE L2 -1296 2018 1569 385 248 124 31 chr12 72725329 72725490 -71060965 - MIR SINE MIR 0 262 87 188 281 105 0 chr12 72725647 72725704 -71060751 - MIR SINE MIR -194 68 6 627 212 217 10 chr12 72726183 72726386 -71060069 + MIR SINE MIR 18 262 0 850 225 6 33 chr12 72726560 72726641 -71059814 - MER45A DNA AcHobo -1403 178 96 2211 73 45 3 chr12 72726641 72726930 -71059525 + AluSg SINE Alu 1 301 -9 850 225 6 33 chr12 72726930 72727030 -71059425 - MER45A DNA AcHobo -1485 96 2 1967 112 59 59 chr12 72727585 72727959 -71058496 + THE1C LTR MaLR 1 374 -1 5694 25 0 0 chr12 72727972 72728677 -71057778 - L1P LINE L1 -1021 5125 4421 1473 66 0 5 chr12 72728677 72728870 -71057585 + L1PA4 LINE L1 5960 6154 -1 3002 67 2 17 chr12 72729049 72729478 -71056977 + L1PA6 LINE L1 5739 6161 0 1817 188 60 19 chr12 72730516 72730575 -71055880 - MER63B DNA MER1_type -626 436 381 4095 126 47 4 chr12 72730575 72731295 -71055160 + L1MA4 LINE L1 5544 6294 -6 1817 188 60 19 chr12 72731295 72731649 -71054806 - MER63B DNA MER1_type -681 381 6 319 341 89 0 chr12 72731875 72731998 -71054457 - L2 LINE L2 -1 3271 3138 840 256 63 10 chr12 72732185 72732392 -71054063 + MIR SINE MIR 15 232 -30 290 323 21 10 chr12 72732417 72732513 -71053942 - L2 LINE L2 -273 2999 2903 235 352 16 48 chr12 72732791 72732916 -71053539 + L2 LINE L2 3134 3254 -18 410 0 0 20 chr12 72732953 72733004 -71053451 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 272 116 0 23 chr12 72733004 72733047 -71053408 + MER63B DNA MER1_type 395 436 0 1507 177 0 45 chr12 72733137 72733403 -71053052 - AluJb SINE Alu -58 254 1 440 248 93 0 chr12 72733539 72733668 -71052787 - FLAM_C SINE Alu -2 141 1 220 365 73 39 chr12 72733737 72733997 -71052458 - L2 LINE L2 -508 2806 2538 2286 107 0 10 chr12 72734585 72734895 -71051560 - AluSx SINE Alu -3 309 3 672 269 115 44 chr12 72734949 72735310 -71051145 - L1ME4a LINE L1 -83 6038 5704 995 167 12 6 chr12 72735310 72735478 -71050977 + FAM SINE Alu 1 169 -6 672 269 115 44 chr12 72735478 72735883 -71050572 - L1ME4a LINE L1 -417 5704 5212 26 50 0 0 chr12 72735945 72735985 -71050470 + AT_rich Low_complexity Low_complexity 1 40 0 189 300 0 20 chr12 72736127 72736177 -71050278 - L2 LINE L2 -102 3170 3122 386 303 0 33 chr12 72736884 72737036 -71049419 + MIR SINE MIR 70 216 -46 379 292 43 69 chr12 72738252 72738598 -71047857 - L1ME LINE L1 -473 5648 5312 2230 106 10 0 chr12 72738608 72738901 -71047554 - AluSg SINE Alu -14 296 1 686 271 35 50 chr12 72738934 72739107 -71047348 + MIR SINE MIR 6 175 -87 1004 93 0 0 chr12 72739107 72739258 -71047197 - L1MA4A LINE L1 -5 6298 6148 686 271 35 50 chr12 72739258 72739342 -71047113 + MIR SINE MIR 175 259 -3 567 317 73 10 chr12 72739381 72739681 -71046774 - L1ME LINE L1 -912 5234 4916 1739 177 48 6 chr12 72739750 72740106 -71046349 + MSTA LTR MaLR 58 428 0 349 299 31 8 chr12 72740114 72740241 -71046214 - L1ME LINE L1 -1572 4574 4445 3403 120 24 4 chr12 72740248 72740749 -71045706 + MER9 LTR ERVK 1 511 0 28 29 0 0 chr12 72740926 72740961 -71045494 + AT_rich Low_complexity Low_complexity 1 35 0 33 0 0 0 chr12 72741306 72741339 -71045116 + AT_rich Low_complexity Low_complexity 1 33 0 802 232 0 53 chr12 72741352 72741525 -71044930 - AluJo SINE Alu -10 302 138 2159 130 3 0 chr12 72741525 72741825 -71044630 - AluSx SINE Alu -11 301 1 802 232 0 53 chr12 72741825 72741841 -71044614 - AluJo SINE Alu -174 138 123 302 296 17 0 chr12 72741846 72741961 -71044494 - L1ME LINE L1 -323 5847 5731 229 277 0 0 chr12 72741975 72742040 -71044415 + MER3 DNA MER1_type 13 77 -132 884 286 126 20 chr12 72742056 72743062 -71043393 - L1ME LINE L1 -805 5341 4207 180 111 0 0 chr12 72743105 72743132 -71043323 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 296 252 8 16 chr12 72743132 72743255 -71043200 - L1ME LINE L1 -1949 4197 4076 1270 169 0 10 chr12 72743277 72743478 -71042977 + AluJo SINE Alu 84 282 -30 188 86 29 0 chr12 72743491 72743526 -71042929 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 2143 106 17 0 chr12 72743537 72743829 -71042626 - AluSq SINE Alu -16 297 1 301 140 0 0 chr12 72743942 72743992 -71042463 - L1 LINE L1 -2210 3936 3887 4893 129 21 55 chr12 72744032 72745140 -71041315 + L1PA16 LINE L1 5080 6157 -9 214 282 70 42 chr12 72745219 72745290 -71041165 + MIR3 SINE MIR 90 162 -46 213 121 0 0 chr12 72745408 72745441 -71041014 + (TG)n Simple_repeat Simple_repeat 1 33 0 259 217 0 0 chr12 72745450 72745510 -71040945 - L1 LINE L1 -2200 3946 3887 834 288 96 30 chr12 72746001 72746730 -71039725 + L1MEd LINE L1 480 1256 -4863 1767 137 100 0 chr12 72746738 72747009 -71039446 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr12 72747045 72747082 -71039373 + AT_rich Low_complexity Low_complexity 1 37 0 327 260 6 55 chr12 72747934 72748115 -71038340 + T-rich Low_complexity Low_complexity 3 174 0 936 251 19 5 chr12 72748406 72748613 -71037842 + MLT1F LTR MaLR 1 210 -332 1216 107 0 0 chr12 72748613 72748781 -71037674 - AluY SINE Alu -7 304 137 1327 215 0 19 chr12 72748782 72749042 -71037413 + MLT1F LTR MaLR 196 450 -92 29 60 0 0 chr12 72749047 72749097 -71037358 + AT_rich Low_complexity Low_complexity 1 50 0 276 227 0 0 chr12 72749104 72749170 -71037285 + MLT1F LTR MaLR 470 535 -7 1704 166 24 7 chr12 72749180 72749469 -71036986 - AluSx SINE Alu -18 294 1 2032 140 3 13 chr12 72749784 72749919 -71036536 + AluSx SINE Alu 1 136 -176 2053 126 3 17 chr12 72749919 72750220 -71036235 + AluSc SINE Alu 1 297 -12 2032 140 3 13 chr12 72750220 72750398 -71036057 + AluSx SINE Alu 136 311 -1 1937 121 10 3 chr12 72750582 72750872 -71035583 - AluSx SINE Alu -20 292 1 2272 102 0 16 chr12 72750929 72751243 -71035212 + AluSx SINE Alu 1 309 -3 28 29 0 0 chr12 72751300 72751335 -71035120 + AT_rich Low_complexity Low_complexity 1 35 0 1088 184 0 0 chr12 72751343 72751511 -71034944 + FAM SINE Alu 2 169 -6 1107 128 0 23 chr12 72751791 72751963 -71034492 + AluSg/x SINE Alu 142 309 -3 28 29 0 0 chr12 72752020 72752055 -71034400 + AT_rich Low_complexity Low_complexity 1 35 0 1088 184 0 0 chr12 72752063 72752231 -71034224 + FAM SINE Alu 2 169 -6 566 274 104 44 chr12 72752605 72752875 -71033580 - L2 LINE L2 0 3313 3028 2220 102 33 18 chr12 72752950 72753282 -71033173 - MER1B DNA MER1_type 0 337 1 197 253 44 99 chr12 72753469 72753560 -71032895 - MER5B DNA MER1_type -10 168 83 894 205 6 0 chr12 72753659 72753815 -71032640 + AluJb SINE Alu 133 289 -23 29 0 0 0 chr12 72753815 72753844 -71032611 + AT_rich Low_complexity Low_complexity 1 29 0 429 252 61 30 chr12 72754125 72754256 -71032199 + L2 LINE L2 1308 1442 -1872 195 42 0 0 chr12 72754434 72754458 -71031997 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1868 172 68 32 chr12 72755922 72756363 -71030092 + LTR2B LTR ERV1 34 490 0 32533 61 22 14 chr12 72756363 72763185 -71023270 + Harlequin LTR ERV1 1 6895 -1 1812 166 139 36 chr12 72763187 72763395 -71023060 + LTR2B LTR ERV1 7 192 -298 222 37 0 0 chr12 72763395 72763422 -71023033 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1812 166 139 36 chr12 72763422 72763652 -71022803 + LTR2B LTR ERV1 192 490 0 430 207 0 12 chr12 72764458 72764590 -71021865 - FRAM SINE Alu 0 198 68 2039 144 14 0 chr12 72764782 72765073 -71021382 + AluSq SINE Alu 1 295 -18 3558 275 114 33 chr12 72765075 72766756 -71019699 + L2 LINE L2 1314 3144 -169 387 0 0 0 chr12 72766756 72766799 -71019656 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 185 329 65 26 chr12 72766821 72766976 -71019479 - L2 LINE L2 -538 2776 2616 577 138 0 0 chr12 72767350 72767430 -71019025 - AluS SINE Alu -232 81 2 1567 185 45 11 chr12 72767858 72768145 -71018310 + AluJo SINE Alu 1 297 -15 1620 150 4 0 chr12 72768341 72768595 -71017860 + L1MA2 LINE L1 3955 4209 -1937 233 67 0 0 chr12 72769520 72769550 -71016905 + LTR6A LTR ERV1 73 102 -462 7147 123 14 6 chr12 72769626 72771546 -71014909 + L1MA2 LINE L1 4179 6117 -187 1514 176 75 7 chr12 72771546 72771865 -71014590 - AluJb SINE Alu 0 312 1 1652 107 0 9 chr12 72771910 72772134 -71014321 - AluSx SINE Alu -90 222 1 1391 119 0 0 chr12 72772135 72772337 -71014118 + L1MA1 LINE L1 6101 6302 0 25 31 0 0 chr12 72772337 72772369 -71014086 + AT_rich Low_complexity Low_complexity 1 32 0 184 272 185 0 chr12 72772455 72772547 -71013908 - L2 LINE L2 -1 3312 3204 233 177 16 32 chr12 72772878 72772940 -71013515 + CT-rich Low_complexity Low_complexity 2 62 0 330 26 0 0 chr12 72772941 72772980 -71013475 + (CA)n Simple_repeat Simple_repeat 1 39 0 297 280 93 47 chr12 72774016 72774166 -71012289 + MIR SINE MIR 32 188 -74 299 129 122 0 chr12 72774469 72774616 -71011839 + (TA)n Simple_repeat Simple_repeat 1 165 0 302 278 46 38 chr12 72774672 72774821 -71011634 - MIR SINE MIR -62 146 48 * 670 268 107 77 chr12 72774799 72775165 -71011290 - L2 LINE L2 -44 3269 2893 1309 199 57 24 chr12 72775174 72775471 -71010984 + AluJo SINE Alu 5 311 -1 1807 143 31 10 chr12 72776949 72777242 -71009213 + AluJb SINE Alu 1 299 -13 2507 60 0 0 chr12 72777243 72777545 -71008910 + AluY SINE Alu 2 303 -8 525 297 69 56 chr12 72777545 72777777 -71008678 - MIR SINE MIR -8 254 20 2238 92 0 3 chr12 72779205 72779518 -71006937 - AluSx SINE Alu 0 312 1 444 217 24 0 chr12 72779861 72779944 -71006511 + MER5A DNA MER1_type 6 90 -99 641 39 29 20 chr12 72779963 72780065 -71006390 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 186 103 0 0 chr12 72780224 72780253 -71006202 + (T)n Simple_repeat Simple_repeat 1 29 0 2342 91 0 22 chr12 72781991 72782309 -71004146 - AluY SINE Alu 0 311 1 2025 136 27 0 chr12 72782617 72782911 -71003544 - AluSx SINE Alu -10 302 1 189 196 0 0 chr12 72783036 72783082 -71003373 + T-rich Low_complexity Low_complexity 1 46 0 561 146 0 0 chr12 72783202 72783284 -71003171 + AluSg/x SINE Alu 201 282 -30 216 0 0 0 chr12 72783287 72783311 -71003144 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 195 69 0 0 chr12 72783429 72783458 -71002997 + (A)n Simple_repeat Simple_repeat 1 29 0 2431 70 6 10 chr12 72783608 72783920 -71002535 - AluY SINE Alu 0 311 1 2584 55 0 0 chr12 72784065 72784376 -71002079 - AluY SINE Alu 0 311 1 1279 216 82 0 chr12 72785063 72785332 -71001123 - AluJo SINE Alu -21 291 1 690 166 76 6 chr12 72785337 72785494 -71000961 + Charlie1 DNA MER1_type 2593 2760 -1 2132 139 0 0 chr12 72785624 72785927 -71000528 + AluSx SINE Alu 1 303 -9 2332 94 13 0 chr12 72785927 72786236 -71000219 + AluSp SINE Alu 1 313 0 2584 44 0 0 chr12 72786236 72786531 -70999924 + AluY SINE Alu 1 295 -16 21 0 0 0 chr12 72786727 72786748 -70999707 + AT_rich Low_complexity Low_complexity 1 21 0 309 336 73 39 chr12 72788023 72788255 -70998200 - MIR SINE MIR -3 259 20 1350 242 35 92 chr12 72788311 72788853 -70997602 + MLT1J LTR MaLR 1 511 0 2154 115 3 3 chr12 72789540 72789835 -70996620 - AluSx SINE Alu -17 295 1 1708 202 101 0 chr12 72789840 72790266 -70996189 - Charlie4a DNA MER1_type -1 507 39 2163 130 17 0 chr12 72791278 72791579 -70994876 - AluSq SINE Alu -7 306 1 2021 128 10 7 chr12 72791581 72791877 -70994578 - AluJo SINE Alu -15 297 1 740 274 43 5 chr12 72791915 72792123 -70994332 + MIR SINE MIR 32 247 -15 325 296 0 0 chr12 72792130 72792228 -70994227 + MIR SINE MIR 164 261 -1 1672 164 4 4 chr12 72792307 72792569 -70993886 + AluJo SINE Alu 34 295 -17 387 0 0 0 chr12 72792570 72792613 -70993842 + (CA)n Simple_repeat Simple_repeat 2 44 0 1069 159 55 0 chr12 72793147 72793348 -70993107 + L1MA4 LINE L1 6084 6295 -5 779 213 0 14 chr12 72793607 72793748 -70992707 + FRAM SINE Alu 8 146 -30 534 259 14 49 chr12 72794215 72794358 -70992097 + MIR3 SINE MIR 38 175 -33 244 301 155 0 chr12 72794483 72794586 -70991869 - MIR SINE MIR -33 229 111 223 255 0 0 chr12 72794765 72794812 -70991643 + CT-rich Low_complexity Low_complexity 5 51 0 765 202 8 0 chr12 72795046 72795175 -70991280 + FLAM_A SINE Alu 12 141 -1 208 281 41 50 chr12 72795179 72795300 -70991155 + MIR SINE MIR 52 171 -91 2191 126 0 0 chr12 72795344 72795638 -70990817 + AluSx SINE Alu 1 294 -18 2314 62 4 0 chr12 72795691 72795967 -70990488 + AluSp SINE Alu 1 277 -36 2349 69 10 20 chr12 72795967 72796273 -70990182 + AluY SINE Alu 1 303 -8 512 265 7 44 chr12 72796418 72796554 -70989901 - MIR SINE MIR -110 152 22 1981 138 7 3 chr12 72797079 72797376 -70989079 - AluSx SINE Alu -14 298 1 202 192 19 19 chr12 72797440 72797549 -70988906 + GA-rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr12 72797691 72797714 -70988741 + AT_rich Low_complexity Low_complexity 1 23 0 941 127 0 8 chr12 72798069 72798203 -70988252 + FLAM_C SINE Alu 1 133 0 34 24 0 0 chr12 72798243 72798284 -70988171 + AT_rich Low_complexity Low_complexity 1 41 0 901 184 7 0 chr12 72798317 72798464 -70987991 + AluJb SINE Alu 145 292 -20 1992 138 17 0 chr12 72798627 72798916 -70987539 + AluSx SINE Alu 1 294 -18 458 141 0 0 chr12 72799700 72799764 -70986691 - AluS SINE Alu -248 65 2 262 287 103 0 chr12 72799943 72800030 -70986425 - MIR SINE MIR -112 150 55 2286 54 3 81 chr12 72800221 72800556 -70985899 + AluY SINE Alu 2 310 -1 1595 178 11 0 chr12 72801025 72801301 -70985154 - AluJo SINE Alu -11 301 23 548 207 122 75 chr12 72801354 72801473 -70984982 + MER117 DNA MER1_type 1 134 -63 2204 111 3 0 chr12 72801473 72801770 -70984685 + AluSq SINE Alu 1 298 -15 548 207 122 75 chr12 72801770 72801838 -70984617 + MER117 DNA MER1_type 134 197 0 2180 102 0 14 chr12 72802067 72802360 -70984095 - AluSq SINE Alu -24 289 1 2500 58 10 3 chr12 72802621 72802930 -70983525 + AluY SINE Alu 1 311 0 28 0 0 0 chr12 72804231 72804259 -70982196 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 72804356 72804380 -70982075 + GC_rich Low_complexity Low_complexity 1 24 0 300 83 0 0 chr12 72804401 72804449 -70982006 + (A)n Simple_repeat Simple_repeat 1 48 0 2565 114 43 64 chr12 72804873 72805256 -70981199 + MSTA LTR MaLR 1 390 -38 2493 93 0 0 chr12 72805256 72805568 -70980887 - AluSq SINE Alu -1 312 1 2187 141 0 0 chr12 72805568 72805873 -70980582 - AluSq SINE Alu -7 306 1 2145 116 18 0 chr12 72805879 72806163 -70980292 - AluSc SINE Alu -20 289 1 2565 114 43 64 chr12 72806163 72806208 -70980247 + MSTA LTR MaLR 394 428 0 7806 148 46 115 chr12 72806208 72806811 -70979644 + MSTA-int LTR MaLR 1 644 -1007 2026 114 0 7 chr12 72806811 72807084 -70979371 + AluSg SINE Alu 1 271 -39 7806 148 46 115 chr12 72807084 72807643 -70978812 + MSTA-int LTR MaLR 644 1138 -513 880 138 0 0 chr12 72807643 72807773 -70978682 - AluSq/x SINE Alu -174 139 10 7806 148 46 115 chr12 72807773 72808254 -70978201 + MSTA-int LTR MaLR 1138 1651 0 2468 134 75 17 chr12 72808254 72808455 -70978000 + MSTA LTR MaLR 1 189 -239 195 42 0 0 chr12 72808455 72808479 -70977976 + (TC)n Simple_repeat Simple_repeat 2 25 0 2468 134 75 17 chr12 72808479 72808679 -70977776 + MSTA LTR MaLR 189 425 -3 193 237 0 0 chr12 72808966 72809004 -70977451 + L2 LINE L2 3228 3265 -7 290 212 45 0 chr12 72809481 72809547 -70976908 - THE1-int LTR MaLR -417 1163 1095 2357 234 50 45 chr12 72809813 72810252 -70976203 - L1MB7 LINE L1 -10 6174 5739 2389 92 3 0 chr12 72810252 72810558 -70975897 - AluSq SINE Alu -6 307 1 2357 234 50 45 chr12 72810558 72811083 -70975372 - L1MB7 LINE L1 -445 5739 5218 1874 159 34 3 chr12 72811083 72811379 -70975076 - AluSx SINE Alu -7 305 1 1566 146 117 29 chr12 72811382 72811656 -70974799 - AluSx SINE Alu -14 298 1 2357 234 50 45 chr12 72811656 72811764 -70974691 - L1MB7 LINE L1 -967 5217 5097 224 286 0 0 chr12 72811768 72811845 -70974610 + T-rich Low_complexity Low_complexity 1 77 0 665 244 65 65 chr12 72812021 72812101 -70974354 - MIR SINE MIR 0 262 183 2281 109 7 0 chr12 72812101 72812404 -70974051 - AluSg SINE Alu -4 306 2 665 244 65 65 chr12 72812404 72812585 -70973870 - MIR SINE MIR -78 184 1 313 273 254 12 chr12 72813726 72813891 -70972564 + MIR SINE MIR 20 224 -38 633 305 39 9 chr12 72814510 72814743 -70971712 - MIR SINE MIR -3 259 20 251 155 86 0 chr12 72814766 72814824 -70971631 - L1MB3 LINE L1 -7 6176 6114 344 161 0 0 chr12 72814827 72814883 -70971572 + AluS SINE Alu 2 57 -244 1126 131 0 0 chr12 72814884 72815037 -70971418 + AluSg/x SINE Alu 146 298 -14 1947 92 46 0 chr12 72815037 72815341 -70971114 - L1MB3 LINE L1 -60 6123 5806 288 258 0 0 chr12 72815347 72815413 -70971042 - MER2 DNA MER2_type 0 345 280 955 84 84 0 chr12 72815439 72815593 -70970862 - MER2 DNA MER2_type -135 210 44 765 173 32 0 chr12 72815595 72815751 -70970704 - L1M3 LINE L1 -384 5799 5639 2172 110 3 7 chr12 72815768 72816069 -70970386 + AluSx SINE Alu 1 300 -12 1142 200 30 70 chr12 72816537 72816706 -70969749 - AluJb SINE Alu -19 293 138 2624 64 0 0 chr12 72816706 72817019 -70969436 - AluSp SINE Alu 0 313 1 1142 200 30 70 chr12 72817019 72817119 -70969336 - AluJb SINE Alu -174 138 35 282 182 61 0 chr12 72817564 72817630 -70968825 + MIR SINE MIR 123 192 -70 840 184 18 18 chr12 72817971 72818139 -70968316 + FRAM SINE Alu 1 168 -8 554 230 41 110 chr12 72818139 72818313 -70968142 + L1MC5 LINE L1 7506 7690 -271 2100 91 0 0 chr12 72818313 72818587 -70967868 - AluY SINE Alu 0 311 38 554 230 41 110 chr12 72818587 72818847 -70967608 + L1MC5 LINE L1 7690 7910 -51 778 293 187 29 chr12 72818948 72819439 -70967016 - L2 LINE L2 -741 2573 2005 2030 114 0 4 chr12 72819444 72819715 -70966740 - AluSq SINE Alu -19 294 25 610 246 129 13 chr12 72819986 72820218 -70966237 - MIR SINE MIR -1 261 3 1554 176 17 23 chr12 72820308 72820609 -70965846 + AluJo SINE Alu 1 299 -13 197 176 0 20 chr12 72821959 72822010 -70964445 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2275 91 7 26 chr12 72822300 72822608 -70963847 + AluSx SINE Alu 1 302 -10 378 289 30 59 chr12 72822765 72822900 -70963555 - MIR SINE MIR -82 180 50 189 262 0 0 chr12 72822934 72822976 -70963479 - L2 LINE L2 -8 3305 3264 1917 142 10 3 chr12 72823013 72823301 -70963154 + AluJb SINE Alu 7 296 -16 293 216 11 0 chr12 72823301 72823389 -70963066 + GA-rich Low_complexity Low_complexity 1 89 0 787 211 5 68 chr12 72823463 72823548 -70962907 - MER45A DNA AcHobo -1403 178 110 2378 70 0 3 chr12 72823548 72823847 -70962608 + AluSx SINE Alu 1 298 -14 787 211 5 68 chr12 72823847 72823951 -70962504 - MER45A DNA AcHobo -1471 110 1 1862 151 14 43 chr12 72823955 72824039 -70962416 + MER58B DNA MER1_type 1 86 -2334 1872 150 3 42 chr12 72824039 72824352 -70962103 - AluJo SINE Alu -11 301 1 1862 151 14 43 chr12 72824352 72824617 -70961838 + MER58B DNA MER1_type 86 340 -1 2235 86 20 20 chr12 72824726 72825029 -70961426 - AluSx SINE Alu -9 303 1 196 284 28 73 chr12 72825054 72825163 -70961292 - L2 LINE L2 -252 3020 2917 321 365 74 32 chr12 72825244 72825801 -70960654 - L2 LINE L2 -529 2785 2206 2380 48 3 39 chr12 72826223 72826534 -70959921 + AluSp SINE Alu 1 300 -13 1953 104 47 0 chr12 72826543 72826821 -70959634 + AluSx SINE Alu 1 291 -21 32 98 0 0 chr12 72827993 72828095 -70958360 + GC_rich Low_complexity Low_complexity 1 102 0 325 261 223 68 chr12 72828095 72828540 -70957915 - L1M2 LINE L1 -5771 1078 594 421 207 0 37 chr12 72829641 72829751 -70956704 - MIR3 SINE MIR 0 208 104 217 200 150 0 chr12 72829928 72829988 -70956467 - MIR SINE MIR -113 149 81 1921 98 3 107 chr12 72830316 72830652 -70955803 + AluSx SINE Alu 1 301 -11 187 299 161 23 chr12 72830776 72830863 -70955592 + L2 LINE L2 3139 3237 -35 304 289 41 21 chr12 72830873 72830970 -70955485 + L2 LINE L2 3188 3286 -27 1196 99 23 6 chr12 72832670 72832841 -70953614 + AluSg/x SINE Alu 120 293 -17 255 125 0 0 chr12 72833019 72833059 -70953396 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 2380 65 3 0 chr12 72833211 72833505 -70952950 - AluY SINE Alu -16 295 1 1619 153 59 10 chr12 72833526 72833682 -70952773 - AluJb SINE Alu -10 302 155 2188 95 44 0 chr12 72833682 72833977 -70952478 - AluSx SINE Alu -4 308 1 1619 153 59 10 chr12 72833977 72834108 -70952347 - AluJb SINE Alu -157 155 1 1920 139 17 0 chr12 72835018 72835306 -70951149 - AluJb SINE Alu -19 293 1 2175 93 23 10 chr12 72835330 72835631 -70950824 - AluSg SINE Alu -5 305 1 1353 212 75 22 chr12 72835748 72836106 -70950349 + Charlie1a DNA MER1_type 7 383 -1072 1095 179 55 18 chr12 72836142 72836360 -70950095 + AluJo SINE Alu 74 299 -13 1411 206 289 6 chr12 72836366 72836875 -70949580 + Charlie1a DNA MER1_type 387 1039 -416 2016 103 3 28 chr12 72837447 72837737 -70948718 - AluSx SINE Alu 0 312 30 1705 175 51 0 chr12 72837834 72838126 -70948329 - AluJb SINE Alu 0 312 6 354 339 122 6 chr12 72839293 72839473 -70946982 + MIR3 SINE MIR 6 206 -2 696 298 181 27 chr12 72839473 72840049 -70946406 + L2 LINE L2 2574 3313 0 700 180 7 7 chr12 72840106 72840245 -70946210 - FLAM_C SINE Alu -4 139 1 236 172 16 62 chr12 72840688 72840752 -70945703 - MER46C DNA MER2_type -1 337 277 440 199 50 77 chr12 72840783 72840964 -70945491 - MER46C DNA MER2_type -139 199 24 2238 113 3 0 chr12 72840984 72841294 -70945161 + AluY SINE Alu 1 311 0 1995 110 3 82 chr12 72841750 72842078 -70944377 + AluSx SINE Alu 1 302 -10 2328 84 3 10 chr12 72842883 72843179 -70943276 + AluSc SINE Alu 1 294 -15 198 0 0 0 chr12 72844029 72844051 -70942404 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1688 158 10 40 chr12 72845059 72845363 -70941092 + AluJo SINE Alu 1 295 -17 405 223 0 32 chr12 72845366 72845460 -70940995 + LTR67 LTR ERVL 97 187 -370 345 324 39 28 chr12 72845546 72845725 -70940730 + LTR67 LTR ERVL 327 507 -50 769 193 33 0 chr12 72846000 72846150 -70940305 - MER3 DNA MER1_type -53 156 2 186 43 0 0 chr12 72846253 72846276 -70940179 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1251 167 197 0 chr12 72846283 72846522 -70939933 - AluJb SINE Alu -16 286 1 255 281 55 48 chr12 72847264 72847410 -70939045 - MER117 DNA MER1_type -50 147 1 735 199 11 164 chr12 72847463 72847725 -70938730 - MER58A DNA MER1_type 0 224 3 308 282 39 0 chr12 72847748 72847826 -70938629 - L2 LINE L2 -1 3312 3232 1260 158 0 22 chr12 72847910 72848138 -70938317 - AluJb SINE Alu -1 311 89 317 273 13 0 chr12 72849149 72849226 -70937229 + MER81 DNA DNA 1 78 -36 1828 156 33 0 chr12 72849375 72849677 -70936778 - AluSx SINE Alu 0 312 1 559 258 0 16 chr12 72850089 72850213 -70936242 - FLAM_A SINE Alu -10 123 2 2235 112 0 3 chr12 72850832 72851128 -70935327 + AluSg SINE Alu 1 295 -15 202 326 200 0 chr12 72851210 72851345 -70935110 - L2 LINE L2 -704 2610 2449 571 258 118 35 chr12 72851439 72851668 -70934787 - MIR SINE MIR -6 256 9 22 0 0 0 chr12 72851819 72851841 -70934614 + AT_rich Low_complexity Low_complexity 1 22 0 2198 87 11 0 chr12 72852712 72852998 -70933457 - AluSx SINE Alu -23 289 1 1884 136 0 21 chr12 72853130 72853416 -70933039 - AluSx SINE Alu -20 292 13 1301 224 59 21 chr12 72853668 72853958 -70932497 - AluJo SINE Alu -6 306 6 1588 102 0 0 chr12 72853992 72854197 -70932258 - AluSx SINE Alu -107 205 1 2263 109 3 6 chr12 72854559 72854872 -70931583 + AluSq SINE Alu 1 312 -1 25 31 0 0 chr12 72855833 72855865 -70930590 + AT_rich Low_complexity Low_complexity 1 32 0 2025 138 3 7 chr12 72855906 72856204 -70930251 - AluSx SINE Alu -15 297 1 2250 105 3 0 chr12 72857087 72857382 -70929073 - AluSc SINE Alu -13 296 1 541 232 183 21 chr12 72857496 72857737 -70928718 + L2 LINE L2 3024 3303 -10 1801 166 7 10 chr12 72858252 72858553 -70927902 - AluJb SINE Alu -8 304 5 2213 70 28 7 chr12 72861552 72861837 -70924618 + AluY SINE Alu 1 291 -20 2118 90 19 51 chr12 72861930 72862242 -70924213 - AluSx SINE Alu -10 302 1 505 227 52 0 chr12 72862332 72862429 -70924026 - L2 LINE L2 -19 3294 3193 374 233 253 13 chr12 72862432 72862582 -70923873 - MIR SINE MIR -76 186 1 326 219 141 78 chr12 72863119 72863247 -70923208 + L1ME1 LINE L1 5713 5848 -318 371 216 20 29 chr12 72863247 72863349 -70923106 + Charlie2 DNA MER1_type 2160 2260 -602 2000 130 21 0 chr12 72863546 72863831 -70922624 - AluSg SINE Alu -19 291 1 351 227 0 165 chr12 72864340 72864516 -70921939 - HAL1 LINE L1 -1053 1454 1308 510 224 168 7 chr12 72864634 72864777 -70921678 - MER58A DNA MER1_type -28 196 31 295 120 0 0 chr12 72865405 72865455 -70921000 - AluJo SINE Alu 0 302 253 1156 174 61 5 chr12 72865456 72865652 -70920803 - AluJo SINE Alu -105 207 1 2309 99 0 0 chr12 72866146 72866439 -70920016 + AluSx SINE Alu 6 298 -14 21 0 0 0 chr12 72866456 72866477 -70919978 + AT_rich Low_complexity Low_complexity 1 21 0 1774 135 73 21 chr12 72867179 72867519 -70918936 - MER46B DNA MER2_type -2 234 2 2137 107 0 30 chr12 72868474 72868774 -70917681 + AluSx SINE Alu 1 291 -21 1644 99 0 14 chr12 72868843 72869065 -70917390 + AluSx SINE Alu 1 219 -93 2071 122 7 7 chr12 72869237 72869533 -70916922 + AluSx SINE Alu 1 296 -16 227 245 61 0 chr12 72869631 72869680 -70916775 - L2 LINE L2 -4 3268 3217 2186 91 3 17 chr12 72869957 72870255 -70916200 + AluSc SINE Alu 1 294 -15 1955 85 54 0 chr12 72870803 72871061 -70915394 - AluY SINE Alu -13 298 27 882 212 39 0 chr12 72871160 72871339 -70915116 - MER5A DNA MER1_type 0 189 4 1708 164 3 30 chr12 72871339 72871637 -70914818 + AluJb SINE Alu 1 290 -22 2425 93 0 0 chr12 72871846 72872146 -70914309 - AluSx SINE Alu -12 300 1 25 31 0 0 chr12 72872477 72872509 -70913946 + AT_rich Low_complexity Low_complexity 1 32 0 2202 89 0 14 chr12 72873723 72874016 -70912439 - AluSc SINE Alu -20 289 1 432 0 0 0 chr12 72874036 72874084 -70912371 + (CA)n Simple_repeat Simple_repeat 2 49 0 180 0 0 0 chr12 72874136 72874156 -70912299 + (CA)n Simple_repeat Simple_repeat 2 21 0 673 71 61 0 chr12 72874228 72874326 -70912129 - L1PA11 LINE L1 0 6174 6071 221 274 0 0 chr12 72877657 72877708 -70908747 - L2 LINE L2 -9 3263 3213 312 259 112 35 chr12 72877722 72877838 -70908617 - L2 LINE L2 0 3313 3189 727 182 94 18 chr12 72877839 72878009 -70908446 - MER20 DNA MER1_type -1 218 36 613 199 142 7 chr12 72878143 72878284 -70908171 + MIR SINE MIR 11 170 -92 324 75 15 30 chr12 72878319 72878386 -70908069 + (TA)n Simple_repeat Simple_repeat 1 66 0 25 31 0 0 chr12 72878400 72878432 -70908023 + AT_rich Low_complexity Low_complexity 1 32 0 955 139 96 72 chr12 72879109 72879317 -70907138 + AluJo SINE Alu 86 298 -14 2310 100 7 3 chr12 72879363 72879673 -70906782 - AluSp SINE Alu -2 311 1 21 0 0 0 chr12 72880271 72880292 -70906163 + AT_rich Low_complexity Low_complexity 1 21 0 2129 123 17 3 chr12 72880736 72881038 -70905417 + AluSx SINE Alu 1 306 -6 569 205 0 9 chr12 72881323 72881435 -70905020 + FLAM_A SINE Alu 6 116 -26 2247 82 7 0 chr12 72882169 72882460 -70903995 - AluSg1 SINE Alu -15 294 2 702 215 65 49 chr12 72882665 72883052 -70903403 - MLT1C LTR MaLR 0 467 3 1020 159 0 0 chr12 72884017 72884168 -70902287 + AluSg/x SINE Alu 137 287 -25 275 235 35 12 chr12 72884561 72884646 -70901809 + L1ME1 LINE L1 5982 6068 -98 2033 119 21 0 chr12 72884646 72884931 -70901524 + AluSg SINE Alu 1 291 -19 362 223 19 39 chr12 72885129 72885232 -70901223 - Charlie2 DNA MER1_type -602 2260 2160 337 82 0 0 chr12 72885862 72885911 -70900544 - AluY SINE Alu -214 86 38 549 249 55 27 chr12 72885911 72886168 -70900287 + L1MC5 LINE L1 7644 7907 -54 5099 144 16 56 chr12 72936541 72936764 -70849691 + L1MB3 LINE L1 5120 5350 -833 2191 120 3 3 chr12 72936764 72937073 -70849382 + AluSp SINE Alu 1 309 -4 5099 144 16 56 chr12 72937073 72937905 -70848550 + L1MB3 LINE L1 5350 6136 -47 1329 160 152 30 chr12 72937905 72938174 -70848281 + AluJo SINE Alu 1 302 -10 5099 144 16 56 chr12 72938174 72938221 -70848234 + L1MB3 LINE L1 6136 6183 0 2140 120 0 0 chr12 72938228 72938511 -70847944 + AluY SINE Alu 1 283 -28 2302 115 0 0 chr12 72938575 72938880 -70847575 + AluSq SINE Alu 1 305 -8 1538 214 18 0 chr12 72939289 72939574 -70846881 + AluJo SINE Alu 1 290 -22 702 140 7 56 chr12 72939574 72939616 -70846839 + L1MB2 LINE L1 5260 5303 -2482 1187 110 0 23 chr12 72939616 72939789 -70846666 + L1PA10 LINE L1 5997 6165 -3 702 140 7 56 chr12 72939789 72939889 -70846566 + L1MB2 LINE L1 5303 5395 -2390 2174 120 0 13 chr12 72939891 72940199 -70846256 + AluSx SINE Alu 1 304 -8 621 75 0 0 chr12 72940225 72940305 -70846150 + AluS SINE Alu 1 80 -232 261 184 0 0 chr12 72940309 72940347 -70846108 - Alu SINE Alu -263 38 1 586 175 10 0 chr12 72940866 72940963 -70845492 - AluJ/FLAM SINE Alu -213 99 2 1395 145 14 5 chr12 72941398 72941619 -70844836 + AluJb SINE Alu 82 304 -8 238 133 0 0 chr12 72941647 72941692 -70844763 + L1MB2 LINE L1 6124 6168 -3 2435 95 0 0 chr12 72942088 72942394 -70844061 + AluSq SINE Alu 1 306 -7 2326 92 0 0 chr12 72943041 72943346 -70843109 + AluSx SINE Alu 1 305 0 2360 88 7 7 chr12 72943456 72943762 -70842693 + AluSq SINE Alu 1 306 -7 413 320 125 63 chr12 72943858 72944633 -70841822 - L2 LINE L2 -3 3269 2544 2094 125 3 3 chr12 72944633 72944930 -70841525 + AluJo SINE Alu 1 297 -15 413 320 125 63 chr12 72944930 72945073 -70841382 - L2 LINE L2 -728 2544 2411 2199 134 0 0 chr12 72945073 72945371 -70841084 + AluSx SINE Alu 1 298 -14 413 320 125 63 chr12 72945371 72945616 -70840839 - L2 LINE L2 -861 2411 2043 924 139 0 7 chr12 72945618 72945755 -70840700 + AluJb SINE Alu 1 136 -176 374 276 18 80 chr12 72945851 72946014 -70840441 + MIR3 SINE MIR 49 201 -7 2137 105 6 16 chr12 72946104 72946419 -70840036 - AluSx SINE Alu 0 312 1 222 37 0 0 chr12 72947180 72947207 -70839248 + (TG)n Simple_repeat Simple_repeat 1 27 0 558 215 16 8 chr12 72948167 72948288 -70838167 + L2 LINE L2 3190 3311 -2 1898 169 3 3 chr12 72948328 72948623 -70837832 + AluJb SINE Alu 1 295 -17 214 179 51 128 chr12 72948670 72948718 -70837737 - L2 LINE L2 0 3313 3272 2230 122 0 0 chr12 72948718 72949012 -70837443 - AluSx SINE Alu -18 294 1 214 179 51 128 chr12 72949012 72949041 -70837414 - L2 LINE L2 -41 3272 3242 280 272 162 6 chr12 72949408 72949581 -70836874 + L2 LINE L2 3114 3313 0 916 211 6 0 chr12 72949582 72949748 -70836707 + FAM SINE Alu 1 167 -8 829 191 24 30 chr12 72949880 72950048 -70836407 - FRAM SINE Alu -9 167 1 2457 77 0 3 chr12 72950192 72950503 -70835952 - AluSg SINE Alu 0 310 1 24 0 0 0 chr12 72950569 72950593 -70835862 + AT_rich Low_complexity Low_complexity 1 24 0 210 91 0 0 chr12 72951211 72951244 -70835211 + (A)n Simple_repeat Simple_repeat 1 33 0 2244 120 0 0 chr12 72951490 72951789 -70834666 - AluSx SINE Alu -13 299 1 484 219 0 62 chr12 72952155 72952238 -70834217 + L1ME LINE L1 5595 5669 -452 1123 223 17 50 chr12 72952238 72952538 -70833917 - AluJo SINE Alu -12 290 1 484 219 0 62 chr12 72952538 72952582 -70833873 + L1ME LINE L1 5669 5714 -407 877 120 0 0 chr12 72952592 72952709 -70833746 - FRAM SINE Alu -24 152 36 1145 119 0 48 chr12 72953047 72953215 -70833240 + AluSx SINE Alu 1 160 -152 269 216 0 0 chr12 72953262 72953313 -70833142 - AluJ/monomer SINE Alu -5 297 247 400 100 0 0 chr12 72953313 72953363 -70833092 + (G)n Simple_repeat Simple_repeat 1 50 0 414 195 11 11 chr12 72953709 72953796 -70832659 - AluS SINE Alu -225 88 2 30 0 0 0 chr12 72953841 72953871 -70832584 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr12 72954022 72954066 -70832389 + AT_rich Low_complexity Low_complexity 1 44 0 2325 90 0 7 chr12 72954079 72954378 -70832077 - AluSq SINE Alu -16 297 1 185 179 0 36 chr12 72954577 72954633 -70831822 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2201 127 0 0 chr12 72954681 72954981 -70831474 - AluSg SINE Alu -10 300 1 24 53 0 0 chr12 72954992 72955030 -70831425 + AT_rich Low_complexity Low_complexity 1 38 0 236 269 56 28 chr12 72955052 72955160 -70831295 - L1MC/D LINE L1 -2004 5804 5694 917 208 0 0 chr12 72955164 72955323 -70831132 + FRAM SINE Alu 5 163 -13 2174 120 0 10 chr12 72955687 72955987 -70830468 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 72956040 72956063 -70830392 + AT_rich Low_complexity Low_complexity 1 23 0 192 125 0 0 chr12 72956081 72956113 -70830342 + (T)n Simple_repeat Simple_repeat 1 32 0 1416 146 0 23 chr12 72956133 72956353 -70830102 - AluJo SINE Alu -30 282 68 368 191 0 83 chr12 72956692 72956776 -70829679 - MER2 DNA MER2_type -1 344 268 1258 145 107 12 chr12 72958589 72958831 -70827624 - MLT1C LTR MaLR -202 265 1 289 277 62 80 chr12 72958831 72959031 -70827424 - LTR67 LTR ERVL -35 522 327 258 231 19 0 chr12 72959140 72959192 -70827263 - LTR67 LTR ERVL -397 160 108 6943 126 70 9 chr12 72959193 72959690 -70826765 - Tigger3b DNA MER2_type -1797 1231 765 1935 148 0 16 chr12 72959690 72959994 -70826461 - AluJb SINE Alu -13 299 1 6943 126 70 9 chr12 72959994 72960122 -70826333 - Tigger3b DNA MER2_type -2263 765 646 2224 109 17 0 chr12 72960122 72960424 -70826031 - AluSx SINE Alu -5 307 1 6943 126 70 9 chr12 72960424 72960745 -70825710 - Tigger3b DNA MER2_type -2382 646 346 2463 62 0 3 chr12 72960745 72961035 -70825420 - AluY SINE Alu -22 289 1 6943 126 70 9 chr12 72961035 72961247 -70825208 - Tigger3b DNA MER2_type -2682 346 1 1070 146 0 0 chr12 72961355 72961506 -70824949 - AluSx SINE Alu -26 286 136 2061 114 14 4 chr12 72961684 72961995 -70824460 - AluSx SINE Alu 0 314 1 923 138 0 35 chr12 72961998 72962143 -70824312 - AluSx SINE Alu -173 140 1 1997 125 24 7 chr12 72962372 72962667 -70823788 + AluSx SINE Alu 1 300 -12 2343 95 3 0 chr12 72963106 72963410 -70823045 + AluSq SINE Alu 1 305 -8 2179 127 3 7 chr12 72963421 72963728 -70822727 + AluSx SINE Alu 1 306 -6 834 227 0 0 chr12 72963731 72963881 -70822574 - FAM SINE Alu -35 150 1 2323 99 3 0 chr12 72964595 72964899 -70821556 - AluSx SINE Alu -7 305 1 2188 78 11 7 chr12 72965605 72965887 -70820568 + AluY SINE Alu 17 299 -12 200 261 67 92 chr12 72966121 72966240 -70820215 - L2 LINE L2 -1 3312 3197 1109 215 104 49 chr12 72966278 72966356 -70820099 - MER2 DNA MER2_type 0 344 272 2285 102 13 0 chr12 72966356 72966661 -70819794 + AluSg SINE Alu 1 309 -1 1109 215 104 49 chr12 72966661 72966908 -70819547 - MER2 DNA MER2_type -72 272 1 1592 123 22 95 chr12 72966955 72967101 -70819354 + AluY SINE Alu 1 113 -198 1944 85 4 8 chr12 72967101 72967359 -70819096 + AluY SINE Alu 51 307 -4 1592 123 22 95 chr12 72967359 72967529 -70818926 + AluY SINE Alu 113 294 -17 1164 160 0 6 chr12 72967551 72967732 -70818723 + AluSg/x SINE Alu 106 285 -27 336 267 0 43 chr12 72967785 72967886 -70818569 + L1MC4a LINE L1 5841 5945 -176 2208 85 17 7 chr12 72967886 72968179 -70818276 + AluSc SINE Alu 1 296 -13 336 267 0 43 chr12 72968179 72968195 -70818260 + L1MC4a LINE L1 5945 5960 -161 240 35 0 0 chr12 72968195 72968224 -70818231 + (TG)n Simple_repeat Simple_repeat 1 29 0 336 267 0 43 chr12 72968224 72968278 -70818177 + L1MC4a LINE L1 5960 6002 -119 276 323 30 42 chr12 72968387 72968554 -70817901 + L1ME4a LINE L1 5894 6058 -63 656 295 47 21 chr12 72968718 72969134 -70817321 - MLT1K LTR MaLR -19 569 63 867 154 0 29 chr12 72969407 72969543 -70816912 + FLAM_C SINE Alu 1 132 -1 426 20 0 0 chr12 72969606 72969657 -70816798 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2154 112 0 0 chr12 72969661 72969948 -70816507 - AluSx SINE Alu -25 287 1 500 143 0 0 chr12 72972586 72972670 -70813785 - L1 LINE L1 -2426 3720 3637 22 0 0 0 chr12 72972808 72972830 -70813625 + AT_rich Low_complexity Low_complexity 1 22 0 701 272 31 61 chr12 72973068 72973214 -70813241 + MIR SINE MIR 3 139 -123 2793 143 24 9 chr12 72973214 72973634 -70812821 + MSTB LTR MaLR 1 426 0 701 272 31 61 chr12 72973634 72973748 -70812707 + MIR SINE MIR 139 255 -7 1949 173 8 32 chr12 72973846 72974217 -70812238 + MLT1A1 LTR MaLR 4 365 0 716 135 0 10 chr12 72974259 72974363 -70812092 + FLAM_A SINE Alu 25 127 -15 376 276 26 40 chr12 72974369 72974521 -70811934 + L1ME LINE L1 5602 5751 -370 379 92 15 15 chr12 72974543 72974608 -70811847 + AluS SINE Alu 1 65 -238 21 71 0 0 chr12 72975412 72975454 -70811001 + AT_rich Low_complexity Low_complexity 1 42 0 269 266 87 29 chr12 72975680 72975853 -70810602 - L1MC4a LINE L1 -1899 5909 5727 25 31 0 0 chr12 72976033 72976065 -70810390 + AT_rich Low_complexity Low_complexity 1 32 0 1561 142 21 105 chr12 72976065 72976390 -70810065 + AluJb SINE Alu 1 298 -14 1145 108 0 0 chr12 72976437 72976585 -70809870 + AluSp SINE Alu 152 299 -14 320 255 103 40 chr12 72976611 72976837 -70809618 - L1MC4a LINE L1 -597 5565 5317 1937 128 6 48 chr12 72977792 72978104 -70808351 - AluSx SINE Alu -13 299 1 581 309 47 51 chr12 72978962 72979218 -70807237 + MIR SINE MIR 6 260 -2 1347 146 12 37 chr12 72979476 72979659 -70806796 - Tigger2 DNA MER2_type 0 2718 2541 1466 191 17 0 chr12 72979659 72979894 -70806561 + MER8 DNA MER2_type 1 239 0 1347 146 12 37 chr12 72979894 72979956 -70806499 - Tigger2 DNA MER2_type -177 2541 2479 1711 152 13 23 chr12 72979956 72980259 -70806196 + AluJo SINE Alu 1 300 -12 769 143 18 0 chr12 72980265 72980377 -70806078 + AluJo/FLAM SINE Alu 1 114 -188 1938 110 45 10 chr12 72980377 72980667 -70805788 - AluSg SINE Alu -10 300 1 731 87 0 48 chr12 72980850 72980954 -70805501 - AluSg/x SINE Alu -16 293 195 348 141 16 148 chr12 72980961 72981023 -70805432 - Tigger2 DNA MER2_type -2607 111 73 1380 190 3 87 chr12 72981023 72981270 -70805185 - AluJo SINE Alu -18 294 79 1840 124 27 24 chr12 72981270 72981568 -70804887 - AluSx SINE Alu -9 303 5 1380 190 3 87 chr12 72981568 72981641 -70804814 - AluJo SINE Alu -233 79 1 348 141 16 148 chr12 72981641 72981706 -70804749 - Tigger2 DNA MER2_type -2645 73 1 1853 159 7 16 chr12 72981737 72982045 -70804410 + AluJb SINE Alu 1 305 -7 22 70 0 0 chr12 72982519 72982562 -70803893 + AT_rich Low_complexity Low_complexity 1 43 0 1821 154 10 13 chr12 72983185 72983490 -70802965 - AluJb SINE Alu -7 305 2 1395 156 0 13 chr12 72983811 72984036 -70802419 - AluJo SINE Alu -88 224 3 1572 163 3 69 chr12 72984893 72985212 -70801243 + AluJo SINE Alu 1 298 -14 458 253 34 56 chr12 72986583 72986761 -70799694 - MER5B DNA MER1_type -1 177 4 1648 175 7 10 chr12 72987315 72987607 -70798848 - AluJo SINE Alu -6 306 16 1019 292 85 66 chr12 72987878 72988574 -70797881 + L2 LINE L2 2550 3311 -2 2612 38 0 0 chr12 72988702 72988995 -70797460 + AluY SINE Alu 5 297 -14 1753 123 3 85 chr12 72989906 72990222 -70796233 + AluJo SINE Alu 23 312 0 25 31 0 0 chr12 72990463 72990495 -70795960 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 72991788 72991818 -70794637 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr12 72991965 72992014 -70794441 + AT_rich Low_complexity Low_complexity 1 49 0 413 214 16 56 chr12 72992048 72992174 -70794281 - FRAM SINE Alu -16 160 40 1207 146 127 8 chr12 72992731 72992999 -70793456 + L1MB4 LINE L1 5861 6160 -20 456 118 24 12 chr12 72993041 72993126 -70793329 + L1MB8 LINE L1 6093 6178 0 2240 94 3 3 chr12 72993316 72993613 -70792842 + AluSx SINE Alu 1 297 -15 182 364 73 9 chr12 72993866 72993976 -70792479 + L3 LINE CR1 1216 1332 -245 1831 181 26 0 chr12 72993983 72994287 -70792168 + AluJb SINE Alu 1 312 0 612 175 10 0 chr12 72994323 72994420 -70792035 + AluJ/FLAM SINE Alu 2 99 -213 2081 114 3 7 chr12 72994845 72995134 -70791321 + AluSx SINE Alu 10 297 -15 221 373 10 29 chr12 72995420 72995522 -70790933 - MER5A DNA MER1_type -30 159 60 2193 107 10 10 chr12 72996091 72996401 -70790054 - AluSx SINE Alu -2 310 1 625 138 0 0 chr12 72996401 72996488 -70789967 - AluSp/q SINE Alu -14 299 213 1189 119 0 0 chr12 72996488 72996648 -70789807 - AluSx SINE Alu -152 160 1 2438 102 0 0 chr12 72996649 72996962 -70789493 - AluSq SINE Alu 0 313 1 815 176 12 2 chr12 72996982 72997237 -70789218 + MSTC LTR MaLR 1 319 -109 1699 95 29 8 chr12 72997349 72997590 -70788865 + AluSx SINE Alu 59 304 -8 2114 104 0 26 chr12 72997868 72998003 -70788452 + AluSx SINE Alu 3 140 -172 2258 95 3 7 chr12 72998003 72998309 -70788146 + AluSc SINE Alu 1 305 -4 2114 104 0 26 chr12 72998309 72998481 -70787974 + AluSx SINE Alu 140 302 -10 221 282 99 14 chr12 72998494 72998565 -70787890 + L2 LINE L2 3196 3272 0 232 238 95 0 chr12 72998738 72998801 -70787654 - L2 LINE L2 0 3272 3204 445 81 32 0 chr12 72998834 72998896 -70787559 + AluS SINE Alu 13 76 -236 252 220 17 51 chr12 72999098 72999216 -70787239 + G-rich Low_complexity Low_complexity 3 116 0 208 178 50 59 chr12 72999315 72999416 -70787039 + (CGGGG)n Simple_repeat Simple_repeat 4 103 0 2129 122 10 0 chr12 72999553 72999841 -70786614 + AluSx SINE Alu 1 291 -21 438 207 289 0 chr12 73000197 73000332 -70786123 - MER5A DNA MER1_type -15 174 1 225 83 0 0 chr12 73000544 73000580 -70785875 + (TG)n Simple_repeat Simple_repeat 2 37 0 1774 162 7 17 chr12 73001164 73001454 -70785001 - AluJo SINE Alu -25 287 1 247 233 193 20 chr12 73002191 73002393 -70784062 - HAL1b LINE L1 -48 1300 1064 367 324 58 0 chr12 73002536 73002709 -70783746 + L1ME LINE L1 3525 3707 -2439 2444 64 3 0 chr12 73002900 73003196 -70783259 - AluSq SINE Alu -15 298 2 2410 72 0 10 chr12 73003198 73003503 -70782952 - AluY SINE Alu -8 303 2 2240 203 188 91 chr12 73003716 73004308 -70782147 + MLT1E2 LTR MaLR 1 621 -5 218 69 0 69 chr12 73004777 73004835 -70781620 + (CCCTG)n Simple_repeat Simple_repeat 2 55 0 1644 174 3 20 chr12 73004859 73005157 -70781298 - AluJb SINE Alu -19 293 1 2043 189 92 37 chr12 73005401 73005893 -70780562 - Charlie1a DNA MER1_type -936 519 1 499 331 98 41 chr12 73005895 73006261 -70780194 - L2 LINE L2 -54 3259 2873 2130 95 58 0 chr12 73006299 73006594 -70779861 + AluSx SINE Alu 1 312 0 185 152 30 0 chr12 73006666 73006699 -70779756 - MIR SINE MIR -118 144 111 243 290 0 0 chr12 73007000 73007069 -70779386 + L1ME LINE L1 4962 5030 -1116 241 240 133 0 chr12 73007433 73007508 -70778947 + L1ME LINE L1 5410 5494 -668 2055 150 3 3 chr12 73007525 73007825 -70778630 - AluSx SINE Alu -12 300 1 237 280 229 0 chr12 73007848 73007966 -70778489 + MIR SINE MIR 100 244 -18 242 250 0 0 chr12 73008776 73008836 -70777619 + G-rich Low_complexity Low_complexity 1 60 0 24 53 0 0 chr12 73009143 73009181 -70777274 + AT_rich Low_complexity Low_complexity 1 38 0 2154 133 0 3 chr12 73009585 73009894 -70776561 + AluSx SINE Alu 1 308 -4 21 71 0 0 chr12 73010467 73010509 -70775946 + GC_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr12 73010533 73010569 -70775886 + GC_rich Low_complexity Low_complexity 1 36 0 1956 137 3 14 chr12 73011220 73011513 -70774942 - AluJb SINE Alu -22 290 1 220 310 0 0 chr12 73011513 73011571 -70774884 - MER5C DNA MER1_type -266 58 1 24 0 0 0 chr12 73013309 73013333 -70773122 + AT_rich Low_complexity Low_complexity 1 24 0 1279 87 29 0 chr12 73013775 73013947 -70772508 - AluSp SINE Alu -136 177 1 247 233 27 14 chr12 73014694 73014767 -70771688 + (ACTTG)n Simple_repeat Simple_repeat 2 75 0 298 343 0 0 chr12 73014835 73014940 -70771515 + C-rich Low_complexity Low_complexity 1 105 0 4822 192 197 13 chr12 73015201 73016553 -70769902 + L1PBa LINE L1 310 1909 -4954 1739 126 63 4 chr12 73016713 73016983 -70769472 - AluSg SINE Alu -18 292 7 1316 158 0 0 chr12 73017012 73017202 -70769253 - AluSx SINE Alu -121 191 2 2173 119 0 3 chr12 73017296 73017591 -70768864 + AluSx SINE Alu 5 298 -14 2338 87 10 0 chr12 73018613 73018913 -70767542 + AluY SINE Alu 1 303 -8 2461 99 0 0 chr12 73019608 73019920 -70766535 + AluSx SINE Alu 1 312 0 415 232 40 0 chr12 73019942 73020041 -70766414 + L1ME LINE L1 5622 5724 -397 1655 110 22 92 chr12 73020136 73020281 -70766174 + AluY SINE Alu 1 114 -197 2004 85 4 0 chr12 73020281 73020539 -70765916 + AluY SINE Alu 51 309 -2 1655 110 22 92 chr12 73020539 73020710 -70765745 + AluY SINE Alu 114 295 -16 472 290 196 16 chr12 73020734 73021079 -70765376 - L2 LINE L2 -230 3083 2681 470 123 0 3 chr12 73021361 73021604 -70764851 + AluSq SINE Alu 1 308 -5 243 79 0 0 chr12 73021779 73021817 -70764638 + (T)n Simple_repeat Simple_repeat 1 38 0 1378 214 119 33 chr12 73021877 73022251 -70764204 + L1M4 LINE L1 4798 5241 -923 2041 139 3 10 chr12 73022251 73022554 -70763901 + AluJb SINE Alu 1 301 -11 1378 214 119 33 chr12 73022554 73022754 -70763701 + L1M4 LINE L1 5241 5423 -741 2297 110 0 0 chr12 73024371 73024671 -70761784 + AluSg SINE Alu 1 300 -10 2246 206 88 19 chr12 73024957 73025523 -70760932 + MLT1E2 LTR MaLR 42 621 -5 2115 118 10 3 chr12 73026202 73026499 -70759956 + AluSq SINE Alu 1 299 -14 1202 252 113 56 chr12 73026758 73027207 -70759248 + L1M4 LINE L1 3792 4214 -1932 2069 114 0 10 chr12 73027207 73027497 -70758958 + AluSg SINE Alu 21 307 -3 1202 252 113 56 chr12 73027497 73027604 -70758851 + L1M4 LINE L1 4214 4313 -1833 2515 63 0 10 chr12 73027604 73027907 -70758548 + AluY SINE Alu 1 300 -11 1202 252 113 56 chr12 73027907 73028258 -70758197 + L1M4 LINE L1 4313 4752 -1394 1097 133 0 7 chr12 73028471 73028622 -70757833 + AluSq/x SINE Alu 1 150 -163 332 150 17 0 chr12 73028635 73028695 -70757760 + Alu SINE Alu 242 302 0 1796 105 62 29 chr12 73028923 73029230 -70757225 - AluSx SINE Alu 0 316 1 2003 130 34 0 chr12 73029232 73029525 -70756930 - AluSx SINE Alu -9 303 1 2467 97 0 0 chr12 73029701 73030010 -70756445 + AluSx SINE Alu 1 309 -3 1575 152 47 18 chr12 73030076 73030353 -70756102 - AluJb SINE Alu -14 298 14 2335 97 0 0 chr12 73032506 73032806 -70753649 - AluSg SINE Alu -10 300 1 2084 90 17 23 chr12 73033346 73033647 -70752808 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 73034063 73034084 -70752371 + GC_rich Low_complexity Low_complexity 1 21 0 335 259 65 52 chr12 73035869 73036069 -70750386 - L1MC4a LINE L1 -271 5850 5636 2227 112 7 0 chr12 73036074 73036379 -70750076 + AluSq SINE Alu 1 307 -6 2434 66 0 0 chr12 73036500 73036805 -70749650 - AluY SINE Alu 0 305 1 2280 103 3 7 chr12 73036901 73037211 -70749244 - AluSp SINE Alu -4 309 1 22 0 0 0 chr12 73037497 73037519 -70748936 + AT_rich Low_complexity Low_complexity 1 22 0 2226 107 10 0 chr12 73037648 73037946 -70748509 - AluSg SINE Alu -9 301 1 1102 116 0 0 chr12 73037946 73038092 -70748363 - AluSq/x SINE Alu -167 146 1 25 90 0 0 chr12 73038265 73038332 -70748123 + AT_rich Low_complexity Low_complexity 1 67 0 639 172 14 41 chr12 73038649 73038794 -70747661 - FLAM_C SINE Alu -1 142 2 237 305 0 0 chr12 73038808 73038867 -70747588 + MER58 DNA MER1_type 169 227 -2193 291 137 59 0 chr12 73038897 73038948 -70747507 + MER58 DNA MER1_type 2366 2419 -1 235 358 25 0 chr12 73038983 73039064 -70747391 + L2 LINE L2 3186 3268 -4 277 365 0 20 chr12 73039088 73039268 -70747187 + MIR3 SINE MIR 3 176 -56 214 218 35 35 chr12 73039432 73039519 -70746936 + GA-rich Low_complexity Low_complexity 4 90 0 362 240 256 0 chr12 73040770 73040895 -70745560 + MER63A DNA MER1_type 15 171 -39 2402 97 0 0 chr12 73040895 73041195 -70745260 - AluSg SINE Alu -10 300 1 1754 192 20 7 chr12 73041291 73041593 -70744862 + AluJb SINE Alu 1 306 -6 1603 167 27 7 chr12 73041709 73042002 -70744453 - AluJb SINE Alu -13 299 1 547 40 27 0 chr12 73042265 73042340 -70744115 - L1PA3 LINE L1 0 6155 6079 469 216 122 52 chr12 73042581 73042598 -70743857 - MER20B DNA MER1_type -5 778 764 2348 90 0 0 chr12 73042598 73042887 -70743568 - AluSx SINE Alu -19 293 5 469 216 122 52 chr12 73042887 73043082 -70743373 - MER20B DNA MER1_type -19 764 551 266 333 137 15 chr12 73043219 73043489 -70742966 + L2 LINE L2 2351 2653 -661 21 0 0 0 chr12 73044156 73044177 -70742278 + GC_rich Low_complexity Low_complexity 1 21 0 1966 114 10 10 chr12 73044789 73045079 -70741376 + AluSg SINE Alu 13 302 -8 424 260 86 54 chr12 73045306 73045589 -70740866 - L1MC4 LINE L1 -314 7728 7325 1869 167 3 0 chr12 73047134 73047422 -70739033 + AluJo SINE Alu 1 289 -23 2392 78 7 0 chr12 73047605 73047901 -70738554 + AluSg SINE Alu 1 298 -12 792 172 14 7 chr12 73048302 73048414 -70738041 + MER2 DNA MER2_type 2 117 -228 1780 154 20 10 chr12 73048414 73048707 -70737748 - AluSx SINE Alu -16 296 1 792 172 14 7 chr12 73048707 73048739 -70737716 + MER2 DNA MER2_type 117 147 -198 620 151 24 32 chr12 73048784 73048910 -70737545 + MER2 DNA MER2_type 136 260 -85 715 173 0 0 chr12 73048913 73049023 -70737432 - AluJb SINE Alu -20 292 183 696 205 176 5 chr12 73049768 73049973 -70736482 - Charlie4a DNA MER1_type -1 507 268 2180 121 0 3 chr12 73049978 73050275 -70736180 - AluSx SINE Alu -16 296 1 233 179 0 15 chr12 73050285 73050352 -70736103 - L1PA15 LINE L1 0 6165 6100 4720 135 42 1 chr12 73050357 73051100 -70735355 - L1PA15 LINE L1 -25 6140 5368 207 69 0 0 chr12 73051260 73051289 -70735166 + (CA)n Simple_repeat Simple_repeat 2 30 0 1489 90 0 72 chr12 73052063 73052286 -70734169 + AluSx SINE Alu 1 207 -105 1371 150 17 39 chr12 73052596 73052829 -70733626 - AluJb SINE Alu -84 228 1 2225 99 24 0 chr12 73053177 73053471 -70732984 - AluSq SINE Alu -12 301 1 2311 98 10 0 chr12 73053554 73053850 -70732605 - AluSq SINE Alu -14 299 1 1793 118 63 4 chr12 73053883 73054153 -70732302 - AluSg SINE Alu -18 292 7 1321 153 0 0 chr12 73054182 73054371 -70732084 - AluSx SINE Alu -121 191 3 758 151 32 0 chr12 73054459 73054585 -70731870 - AluSq/x SINE Alu -181 132 3 25 90 0 0 chr12 73054760 73054827 -70731628 + AT_rich Low_complexity Low_complexity 1 67 0 639 172 14 41 chr12 73055144 73055289 -70731166 - FLAM_C SINE Alu -1 142 2 237 305 0 0 chr12 73055303 73055362 -70731093 + MER58 DNA MER1_type 169 227 -2193 291 137 59 0 chr12 73055392 73055443 -70731012 + MER58 DNA MER1_type 2366 2419 -1 235 358 25 0 chr12 73055478 73055559 -70730896 + L2 LINE L2 3186 3268 -4 277 359 0 20 chr12 73055583 73055763 -70730692 + MIR3 SINE MIR 3 176 -56 1858 211 88 29 chr12 73056388 73056598 -70729857 - Charlie4a DNA MER1_type -1454 507 311 2150 128 0 3 chr12 73056598 73056895 -70729560 - AluSx SINE Alu -16 296 1 1858 211 88 29 chr12 73056895 73057163 -70729292 - Charlie4a DNA MER1_type -1650 311 1 1915 159 0 3 chr12 73057972 73058280 -70728175 - AluJb SINE Alu -1 311 5 2047 130 48 0 chr12 73058905 73059198 -70727257 - AluSg SINE Alu -3 307 1 332 326 62 7 chr12 73059625 73059769 -70726686 + MIR SINE MIR 9 160 -102 2150 95 10 20 chr12 73060008 73060303 -70726152 + AluSp SINE Alu 1 292 -21 22 35 0 0 chr12 73060303 73060332 -70726123 + AT_rich Low_complexity Low_complexity 1 29 0 401 158 0 0 chr12 73060332 73060408 -70726047 - Alu SINE Alu -6 305 230 237 185 0 77 chr12 73061023 73061088 -70725367 + AluSp/q SINE Alu 238 297 -6 234 0 0 0 chr12 73061392 73061418 -70725037 + (T)n Simple_repeat Simple_repeat 1 26 0 2305 82 24 0 chr12 73061501 73061795 -70724660 + AluSp SINE Alu 1 301 -12 1971 140 13 29 chr12 73062143 73062457 -70723998 + AluJb SINE Alu 1 309 -3 367 228 50 10 chr12 73062489 73062590 -70723865 - MIR SINE MIR -62 200 96 546 157 0 0 chr12 73062734 73062817 -70723638 + AluJ/FLAM SINE Alu 1 83 -229 21 0 0 0 chr12 73062981 73063002 -70723453 + GC_rich Low_complexity Low_complexity 1 21 0 332 279 129 52 chr12 73063612 73063851 -70722604 + MIR SINE MIR 9 261 -1 2174 92 10 20 chr12 73063995 73064290 -70722165 + AluSp SINE Alu 1 292 -21 22 35 0 0 chr12 73064290 73064319 -70722136 + AT_rich Low_complexity Low_complexity 1 29 0 2104 133 13 0 chr12 73064319 73064621 -70721834 - AluSx SINE Alu -6 306 1 182 61 0 30 chr12 73065070 73065103 -70721352 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 27 49 0 0 chr12 73065103 73065144 -70721311 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 73065209 73065235 -70721220 + AT_rich Low_complexity Low_complexity 1 26 0 1877 117 106 4 chr12 73065286 73065559 -70720896 - AluSx SINE Alu -11 301 1 409 250 22 66 chr12 73065860 73065996 -70720459 + L2 LINE L2 3184 3313 0 2132 112 3 13 chr12 73066017 73066322 -70720133 - AluSp SINE Alu -11 302 1 314 240 256 0 chr12 73067447 73067572 -70718883 + MER63A DNA MER1_type 15 171 -39 2217 110 3 3 chr12 73067572 73067871 -70718584 - AluSg SINE Alu -9 301 3 1796 192 19 7 chr12 73067968 73068276 -70718179 + AluJb SINE Alu 1 312 0 1598 167 27 7 chr12 73068386 73068679 -70717776 - AluJb SINE Alu -13 299 1 525 40 27 0 chr12 73068941 73069016 -70717439 - L1PA3 LINE L1 0 6155 6079 386 221 122 52 chr12 73069257 73069274 -70717181 - MER20B DNA MER1_type -5 778 764 2326 93 0 0 chr12 73069274 73069564 -70716891 - AluSx SINE Alu -18 294 5 386 221 122 52 chr12 73069564 73069759 -70716696 - MER20B DNA MER1_type -19 764 551 323 334 216 20 chr12 73069896 73070243 -70716212 + L2 LINE L2 2351 2765 -549 194 363 24 32 chr12 73070431 73070555 -70715900 + L2 LINE L2 2858 2980 -292 21 0 0 0 chr12 73070833 73070854 -70715601 + GC_rich Low_complexity Low_complexity 1 21 0 2002 108 4 11 chr12 73071466 73071744 -70714711 + AluSg SINE Alu 13 288 -22 24 32 0 0 chr12 73071804 73071835 -70714620 + AT_rich Low_complexity Low_complexity 1 31 0 2273 84 13 0 chr12 73071899 73072198 -70714257 + AluY SINE Alu 1 303 -8 327 301 174 21 chr12 73072267 73072503 -70713952 + L1ME LINE L1 4748 5019 -1127 2428 103 0 0 chr12 73072893 73073205 -70713250 + AluSx SINE Alu 1 312 0 386 232 40 0 chr12 73073227 73073326 -70713129 + L1ME LINE L1 5622 5724 -397 2138 113 0 10 chr12 73073421 73073723 -70712732 + AluY SINE Alu 1 299 -12 329 171 53 188 chr12 73073753 73073923 -70712532 - L1MC/D LINE L1 -2332 5476 5330 225 275 0 0 chr12 73074181 73074250 -70712205 - L1MC/D LINE L1 -1116 5030 4962 1932 154 3 3 chr12 73074375 73074667 -70711788 + AluSx SINE Alu 1 292 -20 1038 143 35 59 chr12 73074898 73075101 -70711354 + AluJb SINE Alu 86 283 -29 231 36 0 0 chr12 73075104 73075132 -70711323 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2220 114 7 0 chr12 73076012 73076310 -70710145 + AluSx SINE Alu 1 300 -12 1215 98 113 10 chr12 73076493 73076697 -70709758 - MER30 DNA MER1_type 0 230 6 230 286 0 36 chr12 73077023 73077079 -70709376 - L2 LINE L2 -57 3215 3162 2105 113 10 0 chr12 73077233 73077524 -70708931 - AluSx SINE Alu -16 296 3 3457 139 65 2 chr12 73077629 73078227 -70708228 - LTR9B LTR ERV1 0 644 9 2209 93 3 10 chr12 73078312 73078614 -70707841 + AluSq SINE Alu 1 300 -13 214 283 33 76 chr12 73078913 73079005 -70707450 - MIR SINE MIR -155 107 20 1528 183 7 33 chr12 73079043 73079344 -70707111 - AluJb SINE Alu -19 293 1 2547 65 0 0 chr12 73079371 73079677 -70706778 + AluY SINE Alu 1 306 -5 487 189 30 0 chr12 73079677 73079980 -70706475 + (TA)n Simple_repeat Simple_repeat 1 312 0 928 190 93 5 chr12 73080104 73080309 -70706146 - MER58A DNA MER1_type 0 224 2 239 282 54 141 chr12 73080618 73080687 -70705768 - MIR3 SINE MIR -40 168 95 2057 126 3 3 chr12 73080687 73080980 -70705475 + AluSx SINE Alu 1 293 -19 2196 129 0 0 chr12 73080981 73081276 -70705179 + AluSx SINE Alu 1 295 -17 239 282 54 141 chr12 73081276 73081353 -70705102 - MIR3 SINE MIR -112 96 33 344 299 30 81 chr12 73082871 73083068 -70703387 - HAL1 LINE L1 -110 2397 2211 2011 152 10 0 chr12 73083482 73083778 -70702677 - AluSx SINE Alu -13 299 1 1968 139 17 14 chr12 73083887 73084182 -70702273 - AluJb SINE Alu -16 296 1 21 71 0 0 chr12 73084508 73084550 -70701905 + AT_rich Low_complexity Low_complexity 1 42 0 286 306 252 0 chr12 73084785 73084932 -70701523 - L2 LINE L2 -2931 383 200 821 204 15 15 chr12 73085450 73085651 -70700804 - L1MA9 LINE L1 -39 6273 6073 2312 83 0 0 chr12 73086682 73086971 -70699484 - AluY SINE Alu -22 289 1 1828 121 40 4 chr12 73087026 73087334 -70699121 - AluSx SINE Alu 0 318 1 2133 137 3 7 chr12 73087363 73087663 -70698792 - AluSx SINE Alu -3 309 11 810 99 0 33 chr12 73087806 73087927 -70698528 - FLAM_C SINE Alu -15 118 2 189 0 0 0 chr12 73089823 73089844 -70696611 + (GA)n Simple_repeat Simple_repeat 1 21 0 464 173 105 8 chr12 73089864 73089997 -70696458 + L1MA5A LINE L1 6146 6291 -6 2002 126 13 16 chr12 73091278 73091587 -70694868 - AluSx SINE Alu -4 308 1 1144 178 26 132 chr12 73092283 73092490 -70693965 - AluYb8 SINE Alu -2 306 148 2131 89 11 14 chr12 73092490 73092772 -70693683 - AluSg SINE Alu -29 281 1 1144 178 26 132 chr12 73092772 73092906 -70693549 - AluYb8 SINE Alu -160 148 1 191 270 0 32 chr12 73093349 73093412 -70693043 + MIR SINE MIR 190 250 -12 566 149 0 0 chr12 73093503 73093590 -70692865 - AluJ/FRAM SINE Alu -10 302 216 269 182 0 18 chr12 73093590 73093645 -70692810 - AluSp SINE Alu -126 177 124 317 161 46 0 chr12 73093645 73093732 -70692723 + (TA)n Simple_repeat Simple_repeat 1 91 0 750 156 0 47 chr12 73093733 73093861 -70692594 - FLAM_C SINE Alu -19 124 3 2488 52 0 3 chr12 73093968 73094273 -70692182 - AluY SINE Alu -7 304 1 1312 169 146 8 chr12 73094403 73094663 -70691792 + AluJo SINE Alu 1 296 -6 1805 131 64 3 chr12 73094703 73094986 -70691469 - AluSx SINE Alu -12 300 1 2234 101 0 14 chr12 73095234 73095531 -70690924 - AluSg SINE Alu -17 293 1 2071 127 24 0 chr12 73095614 73095906 -70690549 - AluSq SINE Alu -14 299 1 551 108 43 0 chr12 73096821 73096914 -70689541 - AluJ/FLAM SINE Alu -215 97 1 189 121 0 0 chr12 73096925 73096958 -70689497 + (T)n Simple_repeat Simple_repeat 1 33 0 1768 177 6 22 chr12 73097018 73097187 -70689268 - AluJb SINE Alu -6 306 143 2307 102 3 0 chr12 73097187 73097482 -70688973 - AluSp SINE Alu -17 296 1 1768 177 6 22 chr12 73097482 73097623 -70688832 - AluJb SINE Alu -169 143 1 1905 156 3 0 chr12 73098080 73098369 -70688086 + AluJo SINE Alu 3 292 -20 1027 148 35 59 chr12 73098600 73098834 -70687621 + AluJb SINE Alu 86 314 0 2211 114 7 0 chr12 73099715 73100012 -70686443 + AluSx SINE Alu 1 299 -13 1173 108 113 10 chr12 73100195 73100399 -70686056 - MER30 DNA MER1_type 0 230 6 230 286 0 36 chr12 73100725 73100781 -70685674 - L2 LINE L2 -57 3215 3162 2105 113 10 0 chr12 73100935 73101226 -70685229 - AluSx SINE Alu -16 296 3 1861 169 29 3 chr12 73101331 73101675 -70684780 - LTR9B LTR ERV1 0 644 292 350 301 31 77 chr12 73102130 73102326 -70684129 - HAL1 LINE L1 -110 2397 2211 21 0 0 0 chr12 73102685 73102706 -70683749 + GC_rich Low_complexity Low_complexity 1 21 0 474 194 5 63 chr12 73102776 73102967 -70683488 + C-rich Low_complexity Low_complexity 1 180 0 1380 277 132 9 chr12 73103148 73103346 -70683109 + L2 LINE L2 2095 2267 -1047 1003 176 0 0 chr12 73103346 73103511 -70682944 + FRAM SINE Alu 1 165 -1 1380 277 132 9 chr12 73103511 73103809 -70682646 + L2 LINE L2 2267 2664 -650 739 176 91 52 chr12 73103809 73104019 -70682436 + MER20 DNA MER1_type 1 218 -1 1380 277 132 9 chr12 73104019 73104059 -70682396 + L2 LINE L2 2664 2698 -616 863 131 16 0 chr12 73104082 73104204 -70682251 - FLAM_C SINE Alu -19 124 1 1213 230 169 21 chr12 73104208 73104770 -70681685 + L2 LINE L2 2689 3311 -2 180 211 0 0 chr12 73104776 73104814 -70681641 + L2 LINE L2 3276 3313 0 867 299 45 6 chr12 73104845 73105086 -70681369 + MIR SINE MIR 10 256 -6 828 111 0 22 chr12 73105280 73105415 -70681040 - FLAM_C SINE Alu -1 132 1 2090 144 7 0 chr12 73105752 73106051 -70680404 - AluSx SINE Alu -11 301 1 1968 139 17 14 chr12 73106160 73106455 -70680000 - AluJb SINE Alu -16 296 1 21 71 0 0 chr12 73106782 73106824 -70679631 + AT_rich Low_complexity Low_complexity 1 42 0 286 306 252 0 chr12 73107059 73107206 -70679249 - L2 LINE L2 -2931 383 200 799 203 35 15 chr12 73107724 73107921 -70678534 - L1MA9 LINE L1 -39 6273 6073 2312 83 0 0 chr12 73108951 73109240 -70677215 - AluY SINE Alu -22 289 1 1828 121 40 4 chr12 73109295 73109603 -70676852 - AluSx SINE Alu 0 318 1 2304 78 41 0 chr12 73109632 73109925 -70676530 - AluYa5 SINE Alu -6 305 1 397 279 79 0 chr12 73109937 73110077 -70676378 - L2 LINE L2 -1024 2290 2140 257 244 11 11 chr12 73110280 73110370 -70676085 + L1MC4 LINE L1 6614 6703 -1339 248 173 0 0 chr12 73110354 73110406 -70676049 - L1MC4 LINE L1 -1339 6703 6652 * 1117 121 0 0 chr12 73110441 73110590 -70675865 - AluSg/x SINE Alu -30 280 132 2417 68 3 0 chr12 73110759 73111053 -70675402 - AluSp SINE Alu -18 295 1 1899 159 10 0 chr12 73111440 73111730 -70674725 + AluSx SINE Alu 1 293 -19 433 339 69 43 chr12 73112005 73112238 -70674217 - MIR SINE MIR -16 246 8 2124 81 3 21 chr12 73112333 73112618 -70673837 + AluSp SINE Alu 1 280 -33 264 91 0 0 chr12 73112618 73112662 -70673793 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr12 73112667 73112702 -70673753 + AT_rich Low_complexity Low_complexity 1 35 0 438 225 202 0 chr12 73112775 73112904 -70673551 + MIR SINE MIR 107 261 -1 260 160 20 0 chr12 73113574 73113624 -70672831 - Alu SINE Alu -248 51 1 466 294 31 0 chr12 73113755 73113919 -70672536 + MIR SINE MIR 23 190 -67 2216 98 14 0 chr12 73114619 73114915 -70671540 + AluSx SINE Alu 1 300 -12 180 273 0 0 chr12 73117779 73117823 -70668632 - L2 LINE L2 -12 3260 3217 22 70 0 0 chr12 73117834 73117877 -70668578 + AT_rich Low_complexity Low_complexity 1 43 0 2516 68 7 0 chr12 73118847 73119154 -70667301 + AluSp SINE Alu 1 309 -4 715 161 0 23 chr12 73121203 73121333 -70665122 + FLAM_A SINE Alu 4 130 -3 23 0 0 0 chr12 73121872 73121895 -70664560 + AT_rich Low_complexity Low_complexity 1 23 0 2316 86 0 19 chr12 73121987 73122300 -70664155 + AluY SINE Alu 1 307 -4 183 111 0 0 chr12 73123138 73123165 -70663290 - MIR SINE MIR -116 146 120 2292 94 0 31 chr12 73123205 73123525 -70662930 - AluSx SINE Alu -2 310 1 407 180 0 14 chr12 73124396 73124535 -70661920 + GA-rich Low_complexity Low_complexity 1 137 0 334 214 162 60 chr12 73124947 73125064 -70661391 - L2 LINE L2 -5 3308 3180 729 263 110 43 chr12 73125341 73125528 -70660927 - L2 LINE L2 -600 2714 2541 2251 101 0 10 chr12 73125528 73125824 -70660631 - AluSx SINE Alu -19 293 1 729 263 110 43 chr12 73125824 73126100 -70660355 - L2 LINE L2 -773 2541 2220 2061 122 26 7 chr12 73126394 73126697 -70659758 - AluSx SINE Alu -3 309 1 2270 116 0 10 chr12 73127814 73128124 -70658331 - AluSx SINE Alu -1 311 5 30 32 0 48 chr12 73129745 73129808 -70656647 + AT_rich Low_complexity Low_complexity 1 60 0 516 303 23 18 chr12 73130235 73130456 -70655999 - MIR SINE MIR 0 262 41 24 32 0 0 chr12 73131103 73131134 -70655321 + AT_rich Low_complexity Low_complexity 1 31 0 908 129 0 0 chr12 73131135 73131259 -70655196 - AluJb SINE Alu -188 124 1 301 258 67 0 chr12 73131403 73131492 -70654963 + MIR SINE MIR 96 190 -72 1884 194 0 3 chr12 73131534 73131843 -70654612 - AluJb SINE Alu -4 308 1 24 32 0 0 chr12 73132380 73132411 -70654044 + AT_rich Low_complexity Low_complexity 1 31 0 873 128 0 8 chr12 73132412 73132537 -70653918 - AluJb SINE Alu -188 124 1 367 228 50 10 chr12 73132681 73132782 -70653673 + MIR SINE MIR 96 200 -62 1971 140 13 29 chr12 73132814 73133128 -70653327 - AluJb SINE Alu -3 309 1 2245 92 24 0 chr12 73133476 73133770 -70652685 - AluSp SINE Alu -12 301 1 225 0 0 0 chr12 73133853 73133878 -70652577 + (A)n Simple_repeat Simple_repeat 1 25 0 2073 109 4 0 chr12 73134181 73134455 -70652000 - AluSx SINE Alu -17 295 21 2092 113 10 10 chr12 73136104 73136404 -70650051 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr12 73136433 73136454 -70650001 + AT_rich Low_complexity Low_complexity 1 21 0 1790 162 7 17 chr12 73136671 73136961 -70649494 + AluJo SINE Alu 1 287 -25 225 83 0 0 chr12 73137545 73137581 -70648874 + (CA)n Simple_repeat Simple_repeat 2 37 0 384 207 289 0 chr12 73137793 73137928 -70648527 + MER5A DNA MER1_type 1 174 -15 2043 110 0 35 chr12 73138266 73138581 -70647874 - AluSx SINE Alu 0 309 5 387 279 179 10 chr12 73139441 73139642 -70646813 - MIR SINE MIR -21 241 7 450 274 82 0 chr12 73140689 73140824 -70645631 + Charlie8 DNA MER1_type 93 238 -2179 203 250 290 32 chr12 73140937 73141061 -70645394 + L2 LINE L2 3116 3271 -1 718 195 32 0 chr12 73142710 73142864 -70643591 + MLT1G LTR MaLR 432 590 0 250 307 0 55 chr12 73143157 73143284 -70643171 - L2 LINE L2 -33 3280 3161 2361 90 7 3 chr12 73144194 73144494 -70641961 - AluSx SINE Alu -11 301 1 371 133 17 0 chr12 73144680 73144740 -70641715 - FLAM SINE Alu -3 130 70 1219 147 4 34 chr12 73145337 73145575 -70640880 + AluSp SINE Alu 1 231 -82 189 0 0 0 chr12 73146549 73146570 -70639885 + (GA)n Simple_repeat Simple_repeat 1 21 0 514 173 105 8 chr12 73146590 73146723 -70639732 + L1MA5A LINE L1 6146 6291 -6 2018 126 13 16 chr12 73148012 73148321 -70638134 - AluSx SINE Alu -4 308 1 1159 178 26 132 chr12 73149017 73149224 -70637231 - AluYb8 SINE Alu -2 306 148 2158 89 11 14 chr12 73149224 73149506 -70636949 - AluSg SINE Alu -29 281 1 1159 178 26 132 chr12 73149506 73149640 -70636815 - AluYb8 SINE Alu -160 148 1 574 149 0 0 chr12 73150237 73150324 -70636131 - AluJ/FRAM SINE Alu -10 302 216 294 182 0 18 chr12 73150324 73150379 -70636076 - AluSp SINE Alu -126 177 124 338 149 46 0 chr12 73150379 73150466 -70635989 + (TA)n Simple_repeat Simple_repeat 1 91 0 766 156 0 47 chr12 73150467 73150595 -70635860 - FLAM_C SINE Alu -19 124 3 2638 46 0 0 chr12 73150702 73151006 -70635449 - AluY SINE Alu -7 304 1 1305 169 146 8 chr12 73151136 73151396 -70635059 + AluJo SINE Alu 1 296 -6 1815 131 64 3 chr12 73151436 73151719 -70634736 - AluSx SINE Alu -12 300 1 2259 101 0 14 chr12 73151967 73152264 -70634191 - AluSg SINE Alu -17 293 1 2228 128 0 0 chr12 73152347 73152645 -70633810 - AluSx SINE Alu -14 298 1 4992 155 62 19 chr12 73152834 73153804 -70632651 + LTR49-int LTR ERV1 4608 5619 -712 446 199 6 78 chr12 73153811 73153977 -70632478 + AluJo SINE Alu 7 160 -152 1915 159 0 3 chr12 73154652 73154960 -70631495 - AluJb SINE Alu -1 311 5 2125 114 10 3 chr12 73155881 73156179 -70630276 - AluSx SINE Alu -12 300 1 2069 115 24 7 chr12 73156409 73156704 -70629751 + AluSx SINE Alu 1 300 -12 2284 97 0 10 chr12 73157144 73157442 -70629013 + AluSx SINE Alu 1 295 -17 714 256 124 21 chr12 73157447 73157598 -70628857 + HAL1b LINE L1 840 974 -374 2299 111 10 0 chr12 73157598 73157904 -70628551 + AluSq SINE Alu 1 309 -4 714 256 124 21 chr12 73157904 73158170 -70628285 + HAL1b LINE L1 974 1300 -48 335 121 17 0 chr12 73158936 73158994 -70627461 + (TG)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr12 73158994 73159014 -70627441 + (GA)n Simple_repeat Simple_repeat 1 20 0 183 312 46 46 chr12 73159325 73159434 -70627021 + L2 LINE L2 3200 3308 -5 3413 138 80 56 chr12 73160194 73160869 -70625586 + LTR8 LTR ERV1 1 691 0 1760 187 0 0 chr12 73160980 73161274 -70625181 + AluJo SINE Alu 1 294 -18 187 318 0 15 chr12 73161324 73161390 -70625065 + MIR SINE MIR 5 69 -193 1851 184 0 3 chr12 73161446 73161739 -70624716 - AluJb SINE Alu -20 292 1 439 256 86 54 chr12 73163279 73163562 -70622893 + L1MC4 LINE L1 7325 7728 -314 2373 95 7 3 chr12 73163788 73164092 -70622363 - AluSx SINE Alu -7 305 1 233 179 0 15 chr12 73164104 73164171 -70622284 - L1PA15 LINE L1 0 6165 6100 4686 134 42 3 chr12 73164176 73164920 -70621535 - L1PA15 LINE L1 -25 6140 5368 207 69 0 0 chr12 73165080 73165109 -70621346 + (CA)n Simple_repeat Simple_repeat 2 30 0 2039 109 0 53 chr12 73165883 73166205 -70620250 + AluSq SINE Alu 1 305 -8 2174 124 0 3 chr12 73167018 73167317 -70619138 - AluSx SINE Alu -14 298 1 2428 50 0 0 chr12 73168423 73168729 -70617726 + AluY SINE Alu 1 306 0 292 303 37 86 chr12 73168933 73169179 -70617276 - MIR SINE MIR -15 247 16 202 273 139 24 chr12 73169666 73169831 -70616624 - L2 LINE L2 0 3313 3130 189 0 0 0 chr12 73170691 73170712 -70615743 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 366 319 99 7 chr12 73171090 73171231 -70615224 + MER5A DNA MER1_type 36 189 0 361 293 8 8 chr12 73171292 73171425 -70615030 - L1ME4a LINE L1 -240 5881 5749 1755 152 10 37 chr12 73171619 73171799 -70614656 + AluJo SINE Alu 1 171 -141 2834 88 30 42 chr12 73171799 73172199 -70614256 + MER48 LTR ERV1 4 398 0 1755 152 10 37 chr12 73172199 73172314 -70614141 + AluJo SINE Alu 171 288 -24 25 0 0 0 chr12 73172429 73172454 -70614001 + AT_rich Low_complexity Low_complexity 1 25 0 391 200 371 29 chr12 73172461 73172636 -70613819 - MIR SINE MIR -8 254 20 334 249 222 32 chr12 73173544 73173658 -70612797 - MIR SINE MIR -41 221 130 942 196 0 73 chr12 73173658 73173796 -70612659 + MER5A DNA MER1_type 1 121 -68 1973 134 0 35 chr12 73173796 73174110 -70612345 - AluSx SINE Alu -9 303 1 942 196 0 73 chr12 73174110 73174175 -70612280 + MER5A DNA MER1_type 121 189 0 334 249 222 32 chr12 73174175 73174245 -70612210 - MIR SINE MIR -132 130 2 2049 98 61 10 chr12 73174651 73174947 -70611508 + AluSp SINE Alu 1 311 -2 2185 57 0 4 chr12 73174956 73175218 -70611237 + L1PA8 LINE L1 5909 6169 -3 367 268 63 68 chr12 73176205 73176410 -70610045 + L2 LINE L2 3099 3302 -11 2213 107 20 0 chr12 73176826 73177124 -70609331 + AluSx SINE Alu 1 304 -8 1130 254 38 29 chr12 73177283 73177598 -70608857 + MLT1I LTR MaLR 76 393 -16 648 101 0 0 chr12 73177772 73177851 -70608604 + AluS SINE Alu 2 80 -232 284 146 0 0 chr12 73177851 73177892 -70608563 + AluJb SINE Alu 115 155 -147 334 310 106 84 chr12 73178133 73178549 -70607906 + L2 LINE L2 2848 3272 0 1934 102 0 4 chr12 73179571 73179827 -70606628 + AluSg SINE Alu 45 299 -11 1546 174 14 39 chr12 73179943 73180225 -70606230 - AluJb SINE Alu -37 275 1 757 280 40 13 chr12 73180775 73181000 -70605455 + MIR SINE MIR 10 240 -22 480 285 47 14 chr12 73181917 73182131 -70604324 + L1MC4 LINE L1 7822 8042 0 5070 132 30 13 chr12 73182140 73183040 -70603415 + L1MC1 LINE L1 5185 6101 -232 845 119 0 45 chr12 73183042 73183176 -70603279 + L1MC1 LINE L1 6164 6291 -42 307 222 14 28 chr12 73183926 73183998 -70602457 + L1MC4a LINE L1 6023 6093 -1715 338 136 23 80 chr12 73184736 73184824 -70601631 - MIR SINE MIR -71 191 109 21 0 0 0 chr12 73185711 73185732 -70600723 + AT_rich Low_complexity Low_complexity 1 21 0 393 171 0 0 chr12 73185860 73185948 -70600507 + CT-rich Low_complexity Low_complexity 3 90 0 234 0 0 0 chr12 73185951 73185977 -70600478 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1542 180 29 4 chr12 73185978 73186250 -70600205 - AluJo SINE Alu -32 280 2 2143 112 0 14 chr12 73186987 73187281 -70599174 - AluSq SINE Alu -23 290 1 1896 184 0 0 chr12 73187342 73187652 -70598803 - AluJo SINE Alu -2 310 1 876 182 91 0 chr12 73187740 73187916 -70598539 - LTR47A LTR ERVL 0 452 261 366 304 76 32 chr12 73188280 73188438 -70598017 + MER5A DNA MER1_type 6 170 -19 1913 121 46 7 chr12 73188562 73188843 -70597612 - AluSx SINE Alu -13 299 8 233 262 33 0 chr12 73188930 73188991 -70597464 - L1ME LINE L1 -314 5856 5794 666 204 64 6 chr12 73189384 73189541 -70596914 + MIR SINE MIR 27 192 -70 2084 111 14 0 chr12 73189891 73190196 -70596259 - AluSx SINE Alu 0 309 1 522 269 88 69 chr12 73190659 73190954 -70595501 + L1MC4a LINE L1 4948 5251 -895 1075 232 66 37 chr12 73191150 73191422 -70595033 - AluJo SINE Alu -30 282 3 3704 108 87 2 chr12 73191425 73192050 -70594405 + L1PA7 LINE L1 5414 6134 -20 180 0 0 0 chr12 73192053 73192073 -70594382 + (TAA)n Simple_repeat Simple_repeat 3 22 0 279 79 0 0 chr12 73192073 73192111 -70594344 + (GAA)n Simple_repeat Simple_repeat 1 38 0 389 305 54 5 chr12 73192204 73192408 -70594047 + L1MC4a LINE L1 5684 5801 -363 410 299 28 7 chr12 73192485 73192629 -70593826 - L1MC4a LINE L1 -1926 5882 5736 376 186 0 0 chr12 73192634 73192704 -70593751 - L1MB8 LINE L1 -6 6172 6103 358 181 48 0 chr12 73192717 73192800 -70593655 - L1MB3 LINE L1 0 6183 6097 271 210 48 0 chr12 73193296 73193358 -70593097 + MIR SINE MIR 86 150 -58 592 258 69 37 chr12 73193440 73193657 -70592798 + MIR SINE MIR 33 256 -6 903 217 59 14 chr12 73193755 73193976 -70592479 - MIR SINE MIR -21 241 11 452 100 17 0 chr12 73193992 73194052 -70592403 + U7 snRNA snRNA 2 62 -1 2130 103 11 0 chr12 73194091 73194372 -70592083 - AluSq SINE Alu -26 287 4 276 268 24 0 chr12 73196392 73196474 -70589981 + MIR SINE MIR 164 247 -15 681 251 121 14 chr12 73196872 73197079 -70589376 + MIR SINE MIR 20 248 -14 326 240 110 10 chr12 73197746 73197846 -70588609 + L2 LINE L2 3204 3313 0 313 281 78 42 chr12 73197866 73198058 -70588397 + MIR SINE MIR 49 247 -15 2333 90 3 3 chr12 73198679 73198978 -70587477 + AluSg SINE Alu 1 299 -11 467 284 330 6 chr12 73199140 73199485 -70586970 + L2 LINE L2 2815 3271 -1 539 306 49 52 chr12 73199861 73200185 -70586270 + MER68 LTR ERV1 240 562 0 2023 291 98 21 chr12 73200189 73200665 -70585790 + L2 LINE L2 1991 2429 -884 516 72 0 0 chr12 73200665 73200734 -70585721 + (CAATC)n Simple_repeat Simple_repeat 4 72 0 2023 291 98 21 chr12 73200734 73201280 -70585175 + L2 LINE L2 2429 3083 -230 243 368 59 0 chr12 73201295 73201363 -70585092 - L2 LINE L2 -50 3263 3192 380 220 149 14 chr12 73201399 73201540 -70584915 + L2 LINE L2 3118 3277 -36 2169 155 76 15 chr12 73201964 73202357 -70584098 + MSTB LTR MaLR 10 426 0 1906 147 6 34 chr12 73202753 73203073 -70583382 - AluSx SINE Alu -1 311 1 1768 139 13 33 chr12 73203209 73203512 -70582943 - AluSx SINE Alu -15 297 1 220 271 35 14 chr12 73203866 73204010 -70582445 + (TA)n Simple_repeat Simple_repeat 2 148 0 236 345 36 12 chr12 73204162 73204246 -70582209 - L2 LINE L2 -173 3099 3014 1045 158 0 0 chr12 73204977 73205142 -70581313 - FAM SINE Alu 0 49 1 486 0 0 0 chr12 73205231 73205285 -70581170 + (TG)n Simple_repeat Simple_repeat 2 55 0 766 238 96 26 chr12 73205565 73206099 -70580356 - MER20B DNA MER1_type 0 783 182 839 130 0 29 chr12 73206103 73206241 -70580214 + FLAM_C SINE Alu 5 138 -5 1909 117 55 0 chr12 73206290 73206564 -70579891 + AluSg SINE Alu 5 293 -17 310 239 101 9 chr12 73207266 73207375 -70579080 + L1ME4a LINE L1 5545 5663 -458 219 209 0 0 chr12 73207380 73207423 -70579032 - MIR SINE MIR -9 253 211 275 315 14 0 chr12 73207426 73207499 -70578956 - MIR SINE MIR -167 95 22 344 288 47 19 chr12 73207518 73207736 -70578719 + L1ME4a LINE L1 5687 5915 -206 287 158 168 30 chr12 73207751 73207852 -70578603 + L1ME4a LINE L1 6006 6120 -1 1256 143 106 43 chr12 73207879 73207972 -70578483 - MER33 DNA MER1_type -2261 324 238 1769 177 0 25 chr12 73207972 73208289 -70578166 - AluJb SINE Alu -3 309 1 1256 143 106 43 chr12 73208289 73208496 -70577959 - MER33 DNA MER1_type -2347 238 5 8243 20 2 2 chr12 73208636 73209787 -70576668 - L1PA3 LINE L1 -3 6152 5003 5852 33 0 1 chr12 73209787 73210469 -70575986 + L1PA3 LINE L1 4337 5017 -1129 463 201 112 63 chr12 73210486 73210684 -70575771 + MIR SINE MIR 15 219 -43 1515 147 147 26 chr12 73210814 73211079 -70575376 - AluJb SINE Alu -5 297 1 23 0 0 0 chr12 73211203 73211226 -70575229 + AT_rich Low_complexity Low_complexity 1 23 0 206 333 0 0 chr12 73211376 73211442 -70575013 - L2 LINE L2 -1 3312 3247 180 0 0 0 chr12 73212110 73212130 -70574325 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2016 146 0 3 chr12 73212150 73212452 -70574003 - AluSq SINE Alu -12 301 1 25 0 0 0 chr12 73213011 73213036 -70573419 + AT_rich Low_complexity Low_complexity 1 25 0 2335 93 3 10 chr12 73213534 73213846 -70572609 + AluSg SINE Alu 1 310 0 260 340 20 10 chr12 73213905 73214005 -70572450 + MIR SINE MIR 49 149 -113 300 287 147 79 chr12 73215006 73215285 -70571170 + L1MDb LINE L1 405 702 -5707 27 0 0 0 chr12 73215285 73215312 -70571143 + GC_rich Low_complexity Low_complexity 1 27 0 230 190 0 17 chr12 73216164 73216222 -70570233 + CT-rich Low_complexity Low_complexity 5 61 0 271 283 67 17 chr12 73216330 73216450 -70570005 + MER5B DNA MER1_type 49 174 -4 1039 41 0 0 chr12 73216576 73216699 -70569756 - L1PA5 LINE L1 -258 5896 5774 362 38 0 38 chr12 73216699 73216745 -70569710 + L1PA6 LINE L1 6104 6154 0 273 238 209 9 chr12 73216765 73216870 -70569585 + MIR SINE MIR 49 174 -88 2218 106 10 6 chr12 73216969 73217281 -70569174 - AluSq SINE Alu 0 313 1 1475 160 3 119 chr12 73217284 73217662 -70568793 - AluSp SINE Alu 0 313 1 545 247 175 0 chr12 73218187 73218341 -70568114 + MER5A DNA MER1_type 9 189 0 2279 116 0 0 chr12 73218450 73218753 -70567702 - AluSx SINE Alu -7 305 3 645 300 111 37 chr12 73218943 73219376 -70567079 + L1ME4a LINE L1 5317 5717 -404 1290 161 23 18 chr12 73219376 73219594 -70566861 + MER20 DNA MER1_type 1 219 0 645 300 111 37 chr12 73219594 73219910 -70566545 + L1ME4a LINE L1 5717 6121 0 281 394 17 0 chr12 73220011 73220186 -70566269 - L2 LINE L2 -2524 790 613 887 136 23 0 chr12 73220350 73220482 -70565973 + FRAM SINE Alu 24 158 -18 434 328 59 0 chr12 73220528 73220714 -70565741 - L1ME LINE L1 -351 5770 5574 549 179 39 39 chr12 73220728 73220884 -70565571 - LTR37B LTR ERV1 0 468 313 303 259 59 0 chr12 73220903 73220988 -70565467 - L1MC4 LINE L1 -1339 6703 6614 396 199 15 7 chr12 73220989 73221125 -70565330 + (TA)n Simple_repeat Simple_repeat 2 138 0 233 280 0 32 chr12 73221125 73221218 -70565237 - L1MC4 LINE L1 -1337 6705 6616 187 152 43 0 chr12 73221226 73221272 -70565183 + (TA)n Simple_repeat Simple_repeat 2 49 0 479 163 16 38 chr12 73221292 73221476 -70564979 + (TA)n Simple_repeat Simple_repeat 1 180 0 368 188 10 79 chr12 73221476 73221577 -70564878 - LTR37B LTR ERV1 -161 307 214 403 263 112 53 chr12 73221818 73222103 -70564352 - L1ME LINE L1 -557 5564 5263 237 173 37 37 chr12 73222110 73222191 -70564264 + T-rich Low_complexity Low_complexity 2 82 0 2002 108 99 21 chr12 73222200 73222533 -70563922 - L1MC2 LINE L1 0 6344 5986 1524 155 53 21 chr12 73222895 73223179 -70563276 - L1MB2 LINE L1 -1 6170 5878 306 0 0 0 chr12 73223242 73223276 -70563179 + (TG)n Simple_repeat Simple_repeat 2 35 0 1658 135 0 12 chr12 73223435 73223705 -70562750 - AluJb SINE Alu 0 310 44 482 211 32 41 chr12 73224619 73224742 -70561713 - L2 LINE L2 0 3313 3192 715 260 27 81 chr12 73225187 73225445 -70561010 + MIR SINE MIR 6 249 -13 306 324 84 35 chr12 73226258 73226400 -70560055 - L2 LINE L2 0 3313 3165 1622 203 14 0 chr12 73226481 73226771 -70559684 - AluJo SINE Alu -18 294 1 2196 181 87 94 chr12 73226803 73227483 -70558972 - LTR8A LTR ERV1 -52 675 1 1002 280 37 7 chr12 73227485 73227756 -70558699 - HUERS-P1 LTR ERV1 -1 6262 5984 183 80 0 0 chr12 73227892 73227917 -70558538 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2051 126 0 23 chr12 73227923 73228232 -70558223 - AluJo SINE Alu -10 302 1 5220 149 62 14 chr12 73228232 73229198 -70557257 - HUERS-P1 LTR ERV1 -712 5619 4608 2110 139 0 3 chr12 73229387 73229690 -70556765 + AluSx SINE Alu 1 302 -10 1880 101 58 25 chr12 73229692 73229999 -70556456 + AluSx SINE Alu 1 316 0 335 150 17 0 chr12 73230227 73230287 -70556168 - Alu SINE Alu 0 302 242 1088 133 0 7 chr12 73230300 73230451 -70556004 - AluSq/x SINE Alu -162 150 1 1278 253 113 56 chr12 73230664 73231015 -70555440 - L1M4 LINE L1 -1394 4752 4423 2491 63 0 10 chr12 73231015 73231318 -70555137 - AluY SINE Alu -11 300 1 1278 253 113 56 chr12 73231318 73231425 -70555030 - L1M4 LINE L1 -1723 4423 4324 2057 114 0 10 chr12 73231425 73231715 -70554740 - AluSg SINE Alu -3 307 21 1278 253 113 56 chr12 73231715 73232164 -70554291 - L1M4 LINE L1 -1822 4324 3792 2101 118 10 3 chr12 73232423 73232720 -70553735 - AluSq SINE Alu -14 299 1 2240 203 174 98 chr12 73233399 73233952 -70552503 - MLT1E2 LTR MaLR -5 621 55 1123 180 4 35 chr12 73234097 73234325 -70552130 - AluJb SINE Alu -7 305 85 220 304 96 26 chr12 73235425 73235540 -70550915 + L2 LINE L2 3180 3302 -11 1915 157 0 7 chr12 73235558 73235851 -70550604 + AluJb SINE Alu 14 304 -8 496 251 114 17 chr12 73235942 73236117 -70550338 + MIR SINE MIR 70 261 -1 719 270 164 37 chr12 73236212 73236645 -70549810 - MLT1K LTR MaLR -78 510 23 2085 261 41 25 chr12 73236888 73237523 -70548932 + MLT2F LTR ERVL 10 654 -9 530 261 164 0 chr12 73237541 73237736 -70548719 + MIR SINE MIR 26 252 -10 317 322 73 96 chr12 73237748 73238062 -70548393 - L2 LINE L2 -56 3216 2910 759 197 171 0 chr12 73238901 73239053 -70547402 - MER45A DNA AcHobo 0 178 1 314 246 131 25 chr12 73240016 73240138 -70546317 - L2 LINE L2 0 3272 3138 1165 256 151 0 chr12 73240766 73241196 -70545259 + L2 LINE L2 1858 2352 -962 1973 180 0 11 chr12 73241351 73241701 -70544754 + MER52A LTR ERV1 1410 1755 0 4810 167 238 30 chr12 73241824 73242974 -70543481 - MER52A LTR ERV1 -366 1389 1 197 294 0 20 chr12 73242975 73243026 -70543429 - MIR SINE MIR -193 69 20 224 243 143 59 chr12 73243034 73243197 -70543258 - MIR SINE MIR -65 197 20 180 0 0 0 chr12 73244148 73244168 -70542287 + (TTA)n Simple_repeat Simple_repeat 3 22 0 5895 46 0 0 chr12 73244168 73244826 -70541629 - L1PA6 LINE L1 -18 6136 5479 972 273 150 30 chr12 73244871 73245720 -70540735 + L2 LINE L2 2366 3313 0 5953 57 6 0 chr12 73245963 73246668 -70539787 + L1PA3 LINE L1 5446 6154 -1 737 174 23 23 chr12 73246668 73246840 -70539615 - MER63 DNA MER1_type -757 173 2 396 230 81 108 chr12 73246840 73247044 -70539411 + MER112 DNA MER1_type 63 260 0 1459 158 42 15 chr12 73247476 73247741 -70538714 - LTR53 LTR ERVL -229 290 19 266 178 0 0 chr12 73247741 73247786 -70538669 - LTR53 LTR ERVL -474 45 1 206 288 113 50 chr12 73247786 73247866 -70538589 - L2 LINE L2 -37 3235 3151 415 277 109 7 chr12 73248082 73248219 -70538236 - MER5A DNA MER1_type -3 186 36 8036 29 1 1 chr12 73248773 73249750 -70536705 - L1P LINE L1 -730 5425 4449 308 200 0 0 chr12 73249755 73249805 -70536650 + MER63C DNA MER1_type 197 246 -684 346 214 69 48 chr12 73249851 73249996 -70536459 - MER63C DNA MER1_type -539 391 244 * 1183 234 67 16 chr12 73249882 73250198 -70536257 + MER63C DNA MER1_type 244 575 -355 900 222 32 0 chr12 73250847 73251032 -70535423 - MER3 DNA MER1_type -18 191 1 2303 89 7 10 chr12 73251711 73252013 -70534442 + AluSq SINE Alu 1 301 -12 552 297 82 18 chr12 73252529 73252748 -70533707 - MIR SINE MIR -18 244 12 2272 102 0 0 chr12 73252818 73253112 -70533343 - AluSc SINE Alu -10 299 6 1200 117 46 30 chr12 73253775 73253972 -70532483 + AluSx SINE Alu 1 200 -112 180 206 0 0 chr12 73253985 73254019 -70532436 + L2 LINE L2 3267 3300 -13 621 207 96 35 chr12 73254044 73254168 -70532287 + L2 LINE L2 3091 3233 -80 1790 159 6 38 chr12 73254168 73254488 -70531967 - AluJo SINE Alu 0 312 3 621 207 96 35 chr12 73254488 73254561 -70531894 + L2 LINE L2 3233 3300 -13 313 235 74 0 chr12 73254566 73254647 -70531808 - L1MC4 LINE L1 -1340 6702 6616 3454 120 71 2 chr12 73254978 73255510 -70530945 - MER4B LTR ERV1 -41 569 1 1679 83 12 12 chr12 73255510 73255746 -70530709 - MER39B LTR ERV1 -415 238 3 596 162 0 0 chr12 73255746 73255845 -70530610 + L1MB2 LINE L1 6066 6164 -7 2515 63 0 0 chr12 73255847 73256147 -70530308 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 73256203 73256232 -70530223 + AT_rich Low_complexity Low_complexity 1 29 0 957 114 0 0 chr12 73256303 73256434 -70530021 - AluSq/x SINE Alu -181 131 1 775 210 8 0 chr12 73256476 73256600 -70529855 + FLAM_A SINE Alu 1 125 -8 1844 139 24 11 chr12 73256620 73256907 -70529548 + AluJb SINE Alu 1 291 -21 829 235 11 28 chr12 73257270 73257449 -70529006 + MER45A DNA AcHobo 1 176 -2 181 305 73 37 chr12 73258290 73258372 -70528083 + L2 LINE L2 3168 3252 -20 312 275 0 22 chr12 73258713 73258804 -70527651 + L1MC4 LINE L1 6614 6702 -1340 777 239 101 22 chr12 73258811 73258870 -70527585 - L2 LINE L2 -27 3286 3233 1558 181 26 13 chr12 73258870 73259174 -70527281 + AluJo SINE Alu 3 310 -2 777 239 101 22 chr12 73259174 73259382 -70527073 - L2 LINE L2 -80 3233 2998 857 249 111 58 chr12 73259734 73260183 -70526272 - LTR33 LTR ERVL -8 513 41 227 272 65 22 chr12 73260608 73260700 -70525755 + L1ME4a LINE L1 5857 5952 -169 2182 121 6 13 chr12 73261058 73261372 -70525083 - AluSx SINE Alu 0 312 1 375 279 39 19 chr12 73261669 73261773 -70524682 - L2 LINE L2 -5 3308 3203 26 30 0 0 chr12 73261877 73261910 -70524545 + AT_rich Low_complexity Low_complexity 1 33 0 1871 166 0 3 chr12 73262760 73263043 -70523412 - AluJo SINE Alu -30 282 1 211 276 233 9 chr12 73263945 73264061 -70522394 - MIR SINE MIR -54 208 67 1194 257 52 54 chr12 73264350 73264755 -70521700 - LTR33 LTR ERVL -117 404 1 2194 172 22 11 chr12 73265370 73265731 -70520724 - MLT1A1 LTR MaLR 0 365 1 1003 208 94 0 chr12 73265745 73265947 -70520508 - MLT1G LTR MaLR -359 231 11 752 35 0 0 chr12 73266130 73266215 -70520240 - AluY SINE Alu -18 293 209 349 277 66 22 chr12 73266638 73266775 -70519680 - L2 LINE L2 -11 3302 3160 7538 183 7 2 chr12 73266789 73268331 -70518124 + L1PB1 LINE L1 3880 5429 -722 4877 113 18 15 chr12 73268431 73269153 -70517302 + L1PB1 LINE L1 5422 6146 0 2288 84 0 20 chr12 73269153 73269451 -70517004 - AluY SINE Alu -19 292 1 1224 186 50 8 chr12 73270877 73271119 -70515336 + LTR53 LTR ERVL 268 519 0 219 175 0 0 chr12 73271121 73271161 -70515294 + L2 LINE L2 3233 3272 0 318 328 17 9 chr12 73271268 73271384 -70515071 - MIR3 SINE MIR -5 203 87 189 281 135 22 chr12 73271376 73271465 -70514990 + L2 LINE L2 3214 3312 -1 * 1774 159 3 51 chr12 73271564 73271879 -70514576 + AluJo SINE Alu 1 300 -12 997 215 50 5 chr12 73271999 73272199 -70514256 - MER3 DNA MER1_type 0 209 1 254 288 34 0 chr12 73272343 73272402 -70514053 + L2 LINE L2 3248 3308 -5 821 300 66 0 chr12 73272592 73272909 -70513546 - L1ME LINE L1 -376 5786 5449 6299 87 35 5 chr12 73273291 73274198 -70512257 + L1PB2 LINE L1 5217 6149 -2 186 250 0 0 chr12 73275296 73275344 -70511111 + MIR SINE MIR 98 145 -117 914 287 159 27 chr12 73275370 73275778 -70510677 - L2 LINE L2 0 3313 2852 603 224 42 14 chr12 73275872 73276015 -70510440 - L1MA9 LINE L1 -42 6270 6124 * 800 226 62 26 chr12 73276005 73276231 -70510224 + L1MA9 LINE L1 5914 6147 -165 3020 132 39 18 chr12 73277045 73277426 -70509029 + L1MA9 LINE L1 5788 6184 -128 2687 144 16 43 chr12 73277426 73277820 -70508635 - MSTB LTR MaLR 0 426 43 1964 140 7 0 chr12 73277820 73278123 -70508332 + AluSx SINE Alu 1 305 0 2687 144 16 43 chr12 73278123 73278165 -70508290 - MSTB LTR MaLR -383 43 1 3020 132 39 18 chr12 73278165 73278292 -70508163 + L1MA9 LINE L1 6184 6307 -5 309 262 142 14 chr12 73278370 73278511 -70507944 - L2 LINE L2 -1937 1377 1219 2309 99 0 0 chr12 73278664 73278957 -70507498 + AluSp SINE Alu 9 301 -12 298 167 0 0 chr12 73279109 73279157 -70507298 + MER112 DNA MER1_type 17 64 -196 484 230 30 0 chr12 73279161 73279261 -70507194 - MER63 DNA MER1_type 0 1062 960 1020 119 0 0 chr12 73279262 73279396 -70507059 + AluJo SINE Alu 1 134 -178 1096 146 31 176 chr12 73279400 73279563 -70506892 - MER63 DNA MER1_type -99 962 777 2019 143 0 0 chr12 73279563 73279849 -70506606 + AluSx SINE Alu 1 286 -26 1096 146 31 176 chr12 73279849 73279984 -70506471 - MER63 DNA MER1_type -284 777 722 2397 100 3 0 chr12 73279984 73280295 -70506160 + AluSx SINE Alu 1 312 0 1096 146 31 176 chr12 73280295 73280352 -70506103 - MER63 DNA MER1_type -339 722 658 2275 91 10 3 chr12 73280743 73281052 -70505403 + THE1B-int LTR MaLR 1270 1580 0 2474 93 51 28 chr12 73281054 73281407 -70505048 + THE1B LTR MaLR 3 363 -1 711 102 0 0 chr12 73281408 73281506 -70504949 + MER57A-int LTR ERV1 7440 7537 0 2669 136 13 0 chr12 73281506 73281904 -70504551 + MER57A LTR ERV1 1 403 0 5056 90 39 15 chr12 73282548 73283223 -70503232 + LTR8 LTR ERV1 1 691 0 648 199 127 11 chr12 73283313 73283471 -70502984 - MER5A DNA MER1_type -6 183 4 307 276 114 0 chr12 73284032 73284204 -70502251 - MIR SINE MIR -55 207 19 238 277 36 66 chr12 73284257 73284394 -70502061 - MER117 DNA MER1_type -57 140 8 2156 181 128 88 chr12 73284624 73285249 -70501206 + MLT1E1 LTR MaLR 1 650 -4 2163 112 3 0 chr12 73285340 73285625 -70500830 + AluSx SINE Alu 1 286 -26 277 289 101 54 chr12 73286042 73286191 -70500264 - L2 LINE L2 0 3313 3158 437 281 30 18 chr12 73286346 73286513 -70499942 - MER104 DNA Tc2 -2 178 10 1749 171 3 13 chr12 73286872 73287182 -70499273 + AluJo SINE Alu 1 307 -5 841 152 133 0 chr12 73287217 73287368 -70499087 + MLT1C LTR MaLR 6 176 -291 2108 98 7 0 chr12 73287606 73287919 -70498536 - AluSx SINE Alu 0 319 5 334 239 15 0 chr12 73288031 73288098 -70498357 - MER63 DNA MER1_type -18 1043 976 808 191 38 19 chr12 73288171 73288501 -70497954 - MER63 DNA MER1_type -619 442 13 268 281 211 9 chr12 73288504 73288732 -70497723 - L2 LINE L2 -119 3194 2921 3639 96 55 74 chr12 73289116 73289734 -70496721 + MER4B LTR ERV1 1 606 -4 270 0 0 0 chr12 73291205 73291235 -70495220 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1065 230 120 41 chr12 73291611 73291902 -70494553 + MER119 DNA MER1_type 1 314 -269 1527 193 30 17 chr12 73291911 73292206 -70494249 + AluJo SINE Alu 1 299 -13 412 143 0 22 chr12 73292216 73292307 -70494148 + (GAA)n Simple_repeat Simple_repeat 3 91 0 2174 167 18 36 chr12 73292335 73292778 -70493677 + LTR56 LTR ERV1 11 445 0 1094 196 59 20 chr12 73292792 73293047 -70493408 + MER119 DNA MER1_type 304 568 -15 512 298 21 0 chr12 73293294 73293435 -70493020 - MER117 DNA MER1_type -53 144 1 3836 196 106 29 chr12 73294149 73294945 -70491510 - MER21B LTR ERV1 -6 857 1 220 355 36 27 chr12 73295002 73295112 -70491343 + L3 LINE CR1 999 1109 -468 974 144 173 27 chr12 73295119 73295455 -70491000 + MER31B LTR ERV1 1 429 -37 771 187 148 27 chr12 73295455 73295706 -70490749 + MER39 LTR ERV1 1 467 -240 1022 201 148 3 chr12 73295706 73295989 -70490466 - LTR54B LTR ERV1 -2 496 173 402 77 0 0 chr12 73295987 73296039 -70490416 - LTR54B LTR ERV1 -446 52 1 * 2720 152 29 2 chr12 73296042 73296457 -70489998 + MSTB LTR MaLR 1 426 0 1013 169 41 30 chr12 73296458 73296685 -70489770 + MER39 LTR ERV1 419 707 0 285 73 0 0 chr12 73296685 73296726 -70489729 + MER31B LTR ERV1 426 466 0 1382 218 28 50 chr12 73296884 73297247 -70489208 + MER4D LTR ERV1 549 903 0 812 138 0 0 chr12 73297254 73297370 -70489085 + Tigger3(Golem) DNA MER2_type 2922 3037 0 210 274 0 20 chr12 73299041 73299092 -70487363 - L2 LINE L2 -23 3249 3200 213 39 0 0 chr12 73299429 73299455 -70487000 + (CA)n Simple_repeat Simple_repeat 2 27 0 1919 166 0 3 chr12 73299572 73299885 -70486570 + AluJo SINE Alu 1 312 0 963 217 22 0 chr12 73300322 73300502 -70485953 - MER5A DNA MER1_type 0 189 6 2437 96 0 6 chr12 73300890 73301202 -70485253 - AluSx SINE Alu -2 310 1 303 345 62 0 chr12 73301602 73301747 -70484708 + L3 LINE CR1 1287 1440 -137 29 0 0 0 chr12 73301757 73301786 -70484669 + AT_rich Low_complexity Low_complexity 1 29 0 1154 194 129 29 chr12 73301799 73302109 -70484346 - LTR37A LTR ERV1 -4 422 82 785 237 64 75 chr12 73302194 73302703 -70483752 - MER31-int LTR ERV1 -664 4272 3708 1259 144 90 59 chr12 73302708 73302974 -70483481 - MLT1D LTR MaLR -2 503 248 917 178 142 71 chr12 73303187 73303468 -70482987 + AluJo SINE Alu 2 302 0 33 25 0 0 chr12 73303471 73303511 -70482944 + AT_rich Low_complexity Low_complexity 1 40 0 860 193 99 0 chr12 73304081 73304242 -70482213 + AluSg/x SINE Alu 125 301 -11 25 51 0 0 chr12 73304418 73304457 -70481998 + AT_rich Low_complexity Low_complexity 1 39 0 1609 124 54 4 chr12 73304457 73304715 -70481740 - AluSx SINE Alu -24 288 18 1137 174 32 0 chr12 73304723 73304941 -70481514 - LTR37A LTR ERV1 -3 423 199 196 256 8 145 chr12 73304977 73305049 -70481406 + MIR SINE MIR 7 59 -203 1128 167 6 0 chr12 73305049 73305223 -70481232 - FAM SINE Alu 0 175 1 196 256 8 145 chr12 73305223 73305267 -70481188 + MIR SINE MIR 59 107 -155 1755 208 21 6 chr12 73305268 73305604 -70480851 + MER58B DNA MER1_type 1 341 0 349 276 28 90 chr12 73305650 73305707 -70480748 + MIR SINE MIR 106 165 -97 2082 132 3 0 chr12 73305707 73306003 -70480452 + AluSx SINE Alu 5 301 -11 349 276 28 90 chr12 73306003 73306090 -70480365 + MIR SINE MIR 165 241 -21 686 200 53 136 chr12 73306258 73306334 -70480121 - MIR SINE MIR -1 261 180 1811 160 14 0 chr12 73306334 73306615 -70479840 - AluJo SINE Alu -27 285 1 686 200 53 136 chr12 73306615 73306803 -70479652 - MIR SINE MIR -82 180 19 207 0 0 0 chr12 73306930 73306953 -70479502 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 433 202 32 11 chr12 73308666 73308760 -70477695 - LTR67 LTR ERVL 0 557 462 4827 163 22 34 chr12 73308820 73309291 -70477164 + L1MB4 LINE L1 5186 5661 -519 2297 121 139 16 chr12 73309291 73309672 -70476783 + MSTA LTR MaLR 1 428 0 4827 163 22 34 chr12 73309672 73310187 -70476268 + L1MB4 LINE L1 5661 6162 -18 377 219 52 31 chr12 73310187 73310283 -70476172 - MER58 DNA MER1_type -2314 106 9 244 321 43 59 chr12 73310568 73310755 -70475700 + L2 LINE L2 1606 1789 -1525 298 135 52 135 chr12 73311765 73311810 -70474645 - L1MB4 LINE L1 0 6180 6146 2168 107 13 0 chr12 73311810 73312109 -70474346 - AluSx SINE Alu -9 303 1 298 135 52 135 chr12 73312109 73312159 -70474296 - L1MB4 LINE L1 -34 6146 6093 36 23 0 0 chr12 73312575 73312618 -70473837 + AT_rich Low_complexity Low_complexity 1 43 0 2330 102 0 19 chr12 73313500 73313814 -70472641 - AluSx SINE Alu -4 308 1 1514 134 0 5 chr12 73314112 73314335 -70472120 + AluSq SINE Alu 83 304 -9 668 269 201 26 chr12 73314409 73314758 -70471697 - MLT1J2 LTR MaLR -40 410 1 390 253 145 12 chr12 73315403 73315569 -70470886 + MIR SINE MIR 1 188 -74 567 223 25 0 chr12 73315818 73315939 -70470516 + MER5C DNA MER1_type 1 124 -200 45 83 0 0 chr12 73316121 73316229 -70470226 + AT_rich Low_complexity Low_complexity 1 108 0 188 65 0 32 chr12 73316245 73316265 -70470190 + (TA)n Simple_repeat Simple_repeat 2 22 -9 2020 153 3 0 chr12 73316265 73316565 -70469890 + AluSx SINE Alu 1 301 -11 188 65 0 32 chr12 73316565 73316575 -70469880 + (TA)n Simple_repeat Simple_repeat 22 31 0 22 35 0 0 chr12 73316597 73316626 -70469829 + AT_rich Low_complexity Low_complexity 1 29 0 350 344 0 0 chr12 73317454 73317579 -70468876 + Charlie3 DNA MER1_type 1440 1564 -1146 445 207 116 37 chr12 73318160 73318224 -70468231 + MER5C DNA MER1_type 148 206 -118 1496 171 77 14 chr12 73318224 73318510 -70467945 - AluJo SINE Alu -8 304 1 445 207 116 37 chr12 73318510 73318609 -70467846 + MER5C DNA MER1_type 206 324 0 237 255 0 0 chr12 73318629 73318676 -70467779 + MER115 DNA AcHobo 103 149 -544 746 276 92 0 chr12 73318876 73319126 -70467329 + MER115 DNA AcHobo 421 693 0 1775 178 0 3 chr12 73319156 73319442 -70467013 + AluJo SINE Alu 1 285 -27 288 77 0 0 chr12 73319446 73319485 -70466970 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 839 249 81 0 chr12 73319547 73319768 -70466687 + MIR SINE MIR 8 246 -16 278 228 0 0 chr12 73319869 73319926 -70466529 + L2 LINE L2 3199 3255 -17 339 176 48 0 chr12 73320185 73320310 -70466145 + G-rich Low_complexity Low_complexity 2 132 0 196 256 213 38 chr12 73320551 73320634 -70465821 + MIR SINE MIR 17 84 -178 2011 112 46 7 chr12 73320634 73320919 -70465536 + AluSx SINE Alu 1 296 -16 196 256 213 38 chr12 73320919 73320995 -70465460 + MIR SINE MIR 84 204 -58 22 56 0 0 chr12 73321005 73321041 -70465414 + AT_rich Low_complexity Low_complexity 1 36 0 654 252 30 57 chr12 73322778 73322975 -70463480 - MIR SINE MIR 0 262 72 441 337 59 16 chr12 73322975 73323162 -70463293 + MER91A DNA MER1_type 2 196 0 654 252 30 57 chr12 73323162 73323226 -70463229 - MIR SINE MIR -190 72 8 296 347 29 29 chr12 73323540 73323710 -70462745 + MIR3 SINE MIR 4 173 -35 32 0 0 0 chr12 73324553 73324585 -70461870 + AT_rich Low_complexity Low_complexity 1 32 0 810 194 8 15 chr12 73324604 73324738 -70461717 + FLAM_A SINE Alu 1 133 0 551 250 76 8 chr12 73325343 73325475 -70460980 - MIR3 SINE MIR -8 200 60 286 170 0 0 chr12 73325597 73325650 -70460805 - L1ME4a LINE L1 -74 6047 5995 490 176 0 0 chr12 73325895 73325980 -70460475 + MLT1B LTR MaLR 304 388 -2 491 128 13 0 chr12 73325980 73326058 -70460397 + MLT1B-int LTR MaLR 1 79 -1292 1038 229 31 38 chr12 73326058 73326350 -70460105 - MLT1A2 LTR MaLR -81 293 4 830 258 40 13 chr12 73326605 73326904 -70459551 - L1ME4a LINE L1 -256 5865 5559 485 270 81 56 chr12 73327605 73327820 -70458635 - MIR SINE MIR 0 262 44 222 271 17 0 chr12 73329007 73329066 -70457389 + (TA)n Simple_repeat Simple_repeat 1 60 0 2139 124 3 10 chr12 73329322 73329620 -70456835 - AluSq SINE Alu -15 298 3 205 288 157 33 chr12 73330506 73330659 -70455796 + L2 LINE L2 2914 3085 -187 251 296 14 14 chr12 73330822 73330893 -70455562 - MIR SINE MIR -109 99 29 609 300 33 49 chr12 73331169 73331586 -70454869 + LTR16A1 LTR ERVL 67 456 -1 454 304 82 27 chr12 73332127 73332311 -70454144 + L2 LINE L2 3069 3262 -10 190 191 48 0 chr12 73332859 73332901 -70453554 + L2 LINE L2 3147 3190 -82 204 239 0 0 chr12 73333796 73333842 -70452613 - L2 LINE L2 -5 3308 3263 1365 183 69 28 chr12 73334029 73334319 -70452136 + AluJb SINE Alu 1 302 -10 2614 133 5 10 chr12 73334651 73335063 -70451392 - L1MA6 LINE L1 0 6300 5891 2572 128 23 0 chr12 73335063 73335455 -70451000 + L1MA6 LINE L1 5511 5911 -389 300 269 78 114 chr12 73335725 73335996 -70450459 - L2 LINE L2 -44 3228 2968 1725 168 0 14 chr12 73336034 73336340 -70450115 + AluSx SINE Alu 1 302 0 1794 163 10 0 chr12 73336384 73336685 -70449770 + AluJo SINE Alu 2 305 -7 251 100 25 0 chr12 73336875 73336915 -70449540 + MER4C LTR ERV1 425 465 0 2700 117 42 0 chr12 73336915 73337316 -70449139 + MER39B LTR ERV1 234 651 -2 1556 181 14 10 chr12 73337319 73337611 -70448844 - L1MB2 LINE L1 -101 6070 5778 690 199 120 102 chr12 73337611 73337993 -70448462 - MER34B LTR ERV1 0 565 177 227 138 75 88 chr12 73337979 73338009 -70448446 - MER34C LTR ERV1 -311 274 245 * 2666 201 60 92 chr12 73338009 73338760 -70447695 + LTR8A LTR ERV1 1 727 0 227 138 75 88 chr12 73338760 73338809 -70447646 - MER34C LTR ERV1 -340 245 196 1709 156 32 0 chr12 73338811 73339094 -70447361 + MER49 LTR ERV1 3 294 -629 1212 213 13 146 chr12 73339130 73339391 -70447064 + MER4D LTR ERV1 452 676 -130 2098 127 7 0 chr12 73339391 73339690 -70446765 - AluSx SINE Alu -11 301 1 1212 213 13 146 chr12 73339690 73339804 -70446651 + MER4D LTR ERV1 676 804 -2 569 121 28 94 chr12 73339807 73339856 -70446599 - MER34B LTR ERV1 -436 129 78 230 0 33 0 chr12 73339856 73339886 -70446569 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 569 121 28 94 chr12 73339886 73339986 -70446469 - MER34B LTR ERV1 -487 78 4 302 29 0 0 chr12 73339986 73340021 -70446434 - L1MB2 LINE L1 -520 5771 5737 1844 165 16 7 chr12 73341338 73341641 -70444814 - AluJb SINE Alu -6 306 1 1152 211 54 93 chr12 73342279 73342686 -70443769 + HAL1 LINE L1 437 827 -1680 255 265 7 88 chr12 73342697 73342844 -70443611 - L2 LINE L2 -74 3239 3105 193 352 9 37 chr12 73342969 73343077 -70443378 + L2 LINE L2 2896 3000 -272 185 351 18 0 chr12 73343731 73343788 -70442667 + L2 LINE L2 3005 3062 -210 189 107 0 0 chr12 73343844 73343872 -70442583 + (T)n Simple_repeat Simple_repeat 1 28 0 266 125 0 0 chr12 73343891 73343931 -70442524 - AluSg/x SINE Alu -81 219 180 359 317 0 0 chr12 73343958 73344062 -70442393 + L2 LINE L2 3208 3311 -2 565 289 124 8 chr12 73344217 73344459 -70441996 + L2 LINE L2 3012 3281 -32 180 162 0 54 chr12 73344428 73344465 -70441990 + MIR SINE MIR 206 240 -22 * 21 57 0 0 chr12 73344591 73344626 -70441829 + AT_rich Low_complexity Low_complexity 1 35 0 1424 168 20 89 chr12 73344627 73344931 -70441524 - AluJb SINE Alu -26 286 4 384 271 117 69 chr12 73344936 73345107 -70441348 + MER112 DNA MER1_type 1 189 -71 2089 125 0 7 chr12 73345107 73345412 -70441043 + AluSq SINE Alu 1 303 -10 384 271 117 69 chr12 73345412 73345487 -70440968 + MER112 DNA MER1_type 189 259 -1 2420 74 0 7 chr12 73345877 73346176 -70440279 - AluY SINE Alu -14 297 1 180 305 85 17 chr12 73346472 73346590 -70439865 + L2 LINE L2 2922 3047 -266 530 266 92 57 chr12 73346674 73347229 -70439226 + L1ME4a LINE L1 5298 5875 -246 758 129 0 0 chr12 73347419 73347520 -70438935 - AluSc SINE Alu -13 296 196 246 156 0 0 chr12 73347520 73347565 -70438890 + T-rich Low_complexity Low_complexity 1 45 0 227 288 34 0 chr12 73348439 73348498 -70437957 - MER112 DNA MER1_type -17 243 183 254 307 51 33 chr12 73349230 73349445 -70437010 - L1M4 LINE L1 -1559 4587 4369 354 212 15 0 chr12 73349938 73350004 -70436451 - MIR SINE MIR -104 158 92 360 215 156 74 chr12 73350019 73350154 -70436301 - L2 LINE L2 0 3313 3168 429 325 46 20 chr12 73351746 73351897 -70434558 - L2 LINE L2 -2 3270 3116 2357 225 140 87 chr12 73352340 73352832 -70433623 + MER69B DNA AcHobo 1 465 -2061 2295 94 0 28 chr12 73352832 73353151 -70433304 - AluSq SINE Alu -3 310 1 2357 225 140 87 chr12 73353151 73353819 -70432636 + MER69B DNA AcHobo 465 1223 -3 855 255 75 18 chr12 73353997 73354330 -70432125 + LTR16A1 LTR ERVL 81 432 -25 261 299 60 68 chr12 73354336 73354453 -70432002 + L2 LINE L2 3165 3280 -33 236 273 23 23 chr12 73355667 73355755 -70430700 + CT-rich Low_complexity Low_complexity 3 90 0 357 275 193 18 chr12 73355801 73356019 -70430436 + MIR SINE MIR 4 259 -3 23 0 0 0 chr12 73356159 73356182 -70430273 + AT_rich Low_complexity Low_complexity 1 23 0 321 261 29 0 chr12 73356302 73356371 -70430084 - MIR3 SINE MIR -53 155 85 2571 149 15 0 chr12 73356744 73357140 -70429315 + MER57A LTR ERV1 2 403 0 8740 113 30 12 chr12 73357140 73358396 -70428059 + MER57A-int LTR ERV1 1 1278 -6259 * 30022 100 26 16 chr12 73358388 73358655 -70427800 + MER57-int LTR ERV1 1083 1346 -6191 222 62 0 0 chr12 73358655 73358687 -70427768 + (CAA)n Simple_repeat Simple_repeat 2 33 0 30022 100 26 16 chr12 73358687 73359181 -70427274 + MER57-int LTR ERV1 1346 1834 -5703 1943 146 3 7 chr12 73359181 73359482 -70426973 + AluSx SINE Alu 1 300 -12 30022 100 26 16 chr12 73359482 73360442 -70426013 + MER57-int LTR ERV1 1834 2783 -4754 2006 108 4 0 chr12 73360442 73360701 -70425754 - AluSq SINE Alu -53 260 1 30022 100 26 16 chr12 73360701 73361186 -70425269 + MER57-int LTR ERV1 2783 3262 -4275 2427 88 10 0 chr12 73361186 73361494 -70424961 + AluY SINE Alu 1 311 0 30022 100 26 16 chr12 73361494 73364493 -70421962 + MER57-int LTR ERV1 3262 7188 -349 2366 93 0 6 chr12 73364508 73364820 -70421635 + THE1-int LTR MaLR 966 1275 -305 35207 34 4 4 chr12 73364832 73370760 -70415695 + L1PA3 LINE L1 8 5940 -215 1620 184 41 10 chr12 73372000 73372294 -70414161 + AluJb SINE Alu 1 303 -9 919 102 28 11 chr12 73372322 73372499 -70413956 + GA-rich Low_complexity Low_complexity 1 180 0 2178 134 3 0 chr12 73373096 73373401 -70413054 + AluSx SINE Alu 1 306 -6 319 252 69 53 chr12 73373962 73374093 -70412362 + L1MC5 LINE L1 7751 7883 -78 1717 177 3 10 chr12 73374177 73374482 -70411973 + AluJo SINE Alu 1 303 -9 499 177 8 40 chr12 73375916 73376040 -70410415 - L1ME3 LINE L1 0 6162 6043 830 176 55 18 chr12 73376040 73376205 -70410250 - FRAM SINE Alu -9 167 1 2435 215 71 24 chr12 73376205 73376837 -70409618 - L1ME3 LINE L1 -110 6052 5391 1017 145 0 30 chr12 73377483 73377649 -70408806 + AluJo SINE Alu 1 161 -151 180 77 0 0 chr12 73377663 73377689 -70408766 + (GA)n Simple_repeat Simple_repeat 1 26 0 322 232 30 20 chr12 73477863 73477962 -70308493 + MER103 DNA DNA 46 145 -21 215 307 50 30 chr12 73478047 73478148 -70308307 - MIR SINE MIR -55 153 51 1782 176 3 7 chr12 73478307 73478613 -70307842 + AluSx SINE Alu 1 305 -7 234 150 0 150 chr12 73479080 73479140 -70307315 + L1ME LINE L1 5619 5669 -501 25 0 0 0 chr12 73479719 73479744 -70306711 + AT_rich Low_complexity Low_complexity 1 25 0 521 266 24 0 chr12 73479825 73479949 -70306506 + MER94 DNA DNA 1 127 -7 196 143 24 0 chr12 73480311 73480353 -70306102 - MIR SINE MIR -69 139 97 211 266 109 83 chr12 73480461 73480653 -70305802 - L2 LINE L2 -90 3182 2986 248 368 39 26 chr12 73480792 73480947 -70305508 - L2 LINE L2 -557 2757 2601 319 274 0 0 chr12 73481092 73481176 -70305279 + GA-rich Low_complexity Low_complexity 1 84 0 1131 201 20 115 chr12 73481202 73481594 -70304861 + MLT1A1 LTR MaLR 11 365 0 1977 176 15 0 chr12 73481665 73481995 -70304460 + Tigger3b DNA MER2_type 1 335 -896 2664 77 11 0 chr12 73481996 73482348 -70304107 - L1PA10 LINE L1 -195 5973 5618 1076 131 28 17 chr12 73482349 73482545 -70303910 + L1PA10 LINE L1 5983 6168 0 4391 141 94 12 chr12 73482794 73483622 -70302833 + Tigger3b DNA MER2_type 330 1225 -6 1881 134 48 106 chr12 73484293 73484726 -70301729 + L1MA4A LINE L1 5893 6300 -3 202 306 47 47 chr12 73484853 73484938 -70301517 - MIR3 SINE MIR -5 203 119 200 233 0 33 chr12 73485300 73485360 -70301095 + GA-rich Low_complexity Low_complexity 1 58 0 260 91 23 0 chr12 73485630 73485674 -70300781 + (GA)n Simple_repeat Simple_repeat 2 46 0 375 279 0 0 chr12 73486598 73486684 -70299771 + MIR3 SINE MIR 78 163 -45 31 0 0 0 chr12 73486789 73486820 -70299635 + AT_rich Low_complexity Low_complexity 1 31 0 14587 27 3 0 chr12 73486820 73489325 -70297130 - L1PA3 LINE L1 -2 6153 3644 747 235 17 71 chr12 73489331 73489569 -70296886 + MER102b DNA MER1_type 114 338 -3 290 273 118 9 chr12 73489750 73489860 -70296595 + MLT1J LTR MaLR 70 191 -320 307 264 50 64 chr12 73489925 73490065 -70296390 + MLT1J LTR MaLR 332 469 -42 263 333 54 0 chr12 73491805 73491898 -70294557 + MIR SINE MIR 51 148 -114 1538 296 14 11 chr12 73492104 73492546 -70293909 + LTR16B LTR ERVL 1 443 -21 322 315 23 15 chr12 73493521 73493651 -70292804 - L1M LINE L1 -832 5410 5280 378 312 0 9 chr12 73493742 73493851 -70292604 - L2 LINE L2 0 3272 3165 11306 202 48 36 chr12 73493972 73494853 -70291602 - L1MB1 LINE L1 -2 5990 5121 2170 112 3 0 chr12 73494853 73495140 -70291315 - AluSx SINE Alu -24 288 1 11306 202 48 36 chr12 73495140 73496231 -70290224 - L1MB1 LINE L1 -871 5121 4044 1711 211 43 3 chr12 73496231 73496581 -70289874 + MLT1A1 LTR MaLR 2 365 0 11306 202 48 36 chr12 73496581 73497353 -70289102 - L1MB1 LINE L1 -1948 4044 3283 2097 132 0 0 chr12 73497353 73497663 -70288792 - AluSg SINE Alu 0 310 1 11306 202 48 36 chr12 73497663 73499192 -70287263 - L1MB1 LINE L1 -2709 3283 1615 257 239 0 87 chr12 73499232 73499324 -70287131 + MER21B LTR ERV1 12 80 -783 2300 221 21 63 chr12 73499450 73500071 -70286384 + MER21B LTR ERV1 145 739 -124 2825 222 32 66 chr12 73500146 73501414 -70285041 - L1MB1 LINE L1 -4488 1484 402 2171 261 27 12 chr12 73501395 73502120 -70284335 - L1MB1 LINE L1 -5381 510 1 * 261 0 0 0 chr12 73502132 73502161 -70284294 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 649 328 133 18 chr12 73502180 73502668 -70283787 - L2 LINE L2 -407 2907 2364 1084 127 0 6 chr12 73503485 73503643 -70282812 + AluSg/x SINE Alu 154 310 -2 1843 179 6 17 chr12 73503859 73504211 -70282244 + MER7A DNA MER2_type 1 346 0 327 303 56 0 chr12 73506801 73506890 -70279565 - L2 LINE L2 -23 3290 3197 248 156 133 0 chr12 73507272 73507317 -70279138 + MER5A DNA MER1_type 139 189 0 324 217 0 0 chr12 73510074 73510134 -70276321 + MER31-int LTR ERV1 418 477 -4459 885 369 51 22 chr12 73511484 73512289 -70274166 + MER31-int LTR ERV1 3053 3880 -2921 1819 99 14 32 chr12 73512893 73513176 -70273279 - THE1B LTR MaLR -86 278 1 245 327 55 0 chr12 73514105 73514215 -70272240 - MLT1J2 LTR MaLR -277 173 58 330 49 24 49 chr12 73514244 73514326 -70272129 + (TA)n Simple_repeat Simple_repeat 2 81 0 318 26 0 0 chr12 73514688 73514727 -70271728 + (TG)n Simple_repeat Simple_repeat 2 40 0 635 310 129 27 chr12 73514803 73515135 -70271320 + LTR33 LTR ERVL 6 371 -150 817 239 94 0 chr12 73515405 73515618 -70270837 + MIR SINE MIR 4 236 -26 1752 175 59 25 chr12 73515734 73516140 -70270315 + LTR52 LTR ERVL 1 420 -1 192 203 29 101 chr12 73516431 73516500 -70269955 - MER5B DNA MER1_type -4 174 111 227 224 0 0 chr12 73516768 73516835 -70269620 - L1MA1 LINE L1 -353 5949 5883 2051 164 102 18 chr12 73517982 73518548 -70267907 + L1MB8 LINE L1 5453 6177 -1 210 282 56 70 chr12 73518583 73518725 -70267730 + MIR SINE MIR 89 228 -34 460 305 178 15 chr12 73518817 73519148 -70267307 + MLT1J2 LTR MaLR 66 450 0 225 197 0 79 chr12 73519471 73519547 -70266908 - L2 LINE L2 -108 3205 3136 1987 149 0 13 chr12 73519625 73519941 -70266514 + AluSx SINE Alu 1 312 0 477 293 123 53 chr12 73519943 73520243 -70266212 - L2 LINE L2 -189 3124 2804 804 104 22 22 chr12 73520666 73520801 -70265654 - L1MA2 LINE L1 -2 6302 6168 870 100 39 221 chr12 73520805 73521085 -70265370 - L1 LINE L1 -1809 5756 5528 17454 164 105 13 chr12 73521086 73521613 -70264842 - L1 LINE L1 -2465 5100 4623 275 0 29 0 chr12 73521613 73521648 -70264807 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 17454 164 105 13 chr12 73521648 73521849 -70264606 - L1 LINE L1 -2942 4623 4442 1607 197 7 14 chr12 73521849 73522143 -70264312 - AluJo SINE Alu -9 303 12 17454 164 105 13 chr12 73522143 73526076 -70260379 - L1 LINE L1 -3123 4442 12 21 71 0 0 chr12 73526114 73526156 -70260299 + AT_rich Low_complexity Low_complexity 1 42 0 206 293 132 36 chr12 73527529 73527696 -70258759 - L2 LINE L2 -527 2787 2605 486 311 229 25 chr12 73527708 73528074 -70258381 + L2 LINE L2 1928 2368 -946 188 306 224 27 chr12 73528325 73528508 -70257947 - MIR SINE MIR -24 238 20 283 190 38 25 chr12 73528746 73528825 -70257630 - L1MA8 LINE L1 -7 6284 6205 1363 240 12 109 chr12 73528873 73529449 -70257006 - MLT2B1 LTR ERVL 0 520 1 281 343 102 9 chr12 73530540 73530648 -70255807 - L2 LINE L2 -5 3267 3150 324 70 0 0 chr12 73531340 73531383 -70255072 + (TA)n Simple_repeat Simple_repeat 1 43 0 221 250 36 0 chr12 73532344 73532400 -70254055 - L2 LINE L2 0 3313 3256 433 380 65 0 chr12 73532663 73532892 -70253563 - MIR SINE MIR -6 256 13 323 299 37 36 chr12 73534186 73534573 -70251882 + L1MC/D LINE L1 5381 5826 -336 334 315 31 8 chr12 73535776 73535903 -70250552 - MER94 DNA DNA -1 133 4 324 0 0 0 chr12 73536125 73536161 -70250294 + (TG)n Simple_repeat Simple_repeat 1 36 0 2984 142 76 14 chr12 73536299 73536862 -70249593 - L1MA4 LINE L1 -1 6299 5702 765 234 29 76 chr12 73537971 73538140 -70248315 + MIR SINE MIR 3 154 -108 993 154 0 11 chr12 73538140 73538322 -70248133 - L1MB8 LINE L1 0 6178 5999 765 234 29 76 chr12 73538322 73538427 -70248028 + MIR SINE MIR 154 262 0 191 186 115 115 chr12 73538607 73538720 -70247735 + L3 LINE CR1 873 985 -592 2466 220 75 17 chr12 73539352 73539929 -70246526 + MER44D DNA MER2_type 1 610 -95 275 167 0 15 chr12 73539957 73540023 -70246432 - L1PB3 LINE L1 -3 6151 6087 * 1387 146 21 9 chr12 73540011 73540244 -70246211 - L1PB3 LINE L1 -22 6132 5897 249 259 24 0 chr12 73540247 73540332 -70246123 - L1P LINE L1 -987 5159 5073 2836 130 12 0 chr12 73540358 73540782 -70245673 - MER57B LTR ERV1 -5 429 1 1465 104 126 9 chr12 73540782 73541012 -70245443 - MER57B-int LTR ERV1 0 7537 7281 716 125 23 31 chr12 73541014 73541142 -70245313 - LTR54B LTR ERV1 -367 131 5 3338 115 8 10 chr12 73541143 73541629 -70244826 - MER57B-int LTR ERV1 -389 7148 6664 1752 123 20 0 chr12 73541628 73541921 -70244534 - MER57-int LTR ERV1 -3325 4212 3914 * 3066 122 26 24 chr12 73541919 73542651 -70243804 - MER57-int LTR ERV1 -2787 3159 2167 2679 149 37 16 chr12 73542647 73543325 -70243130 - MER57-int LTR ERV1 -3929 3584 1586 * 3584 145 61 0 chr12 73543346 73543904 -70242551 - MER57-int LTR ERV1 -5067 879 288 902 166 80 0 chr12 73543901 73544076 -70242379 - MER57-int LTR ERV1 -6865 672 484 * 221 250 36 0 chr12 73545402 73545458 -70240997 - L2 LINE L2 0 3313 3256 418 384 65 0 chr12 73545721 73545950 -70240505 - MIR SINE MIR -6 256 13 323 299 37 36 chr12 73547244 73547631 -70238824 + L1MC/D LINE L1 5381 5826 -336 334 315 31 8 chr12 73548835 73548962 -70237493 - MER94 DNA DNA -1 133 4 324 0 0 0 chr12 73549184 73549220 -70237235 + (TG)n Simple_repeat Simple_repeat 1 36 0 3014 138 76 14 chr12 73549358 73549921 -70236534 - L1MA4 LINE L1 -1 6299 5702 765 234 29 76 chr12 73551030 73551199 -70235256 + MIR SINE MIR 3 154 -108 993 154 0 11 chr12 73551199 73551381 -70235074 - L1MB8 LINE L1 0 6178 5999 765 234 29 76 chr12 73551381 73551486 -70234969 + MIR SINE MIR 154 262 0 191 186 115 115 chr12 73551666 73551779 -70234676 + L3 LINE CR1 873 985 -592 2441 222 75 17 chr12 73552411 73552988 -70233467 + MER44D DNA MER2_type 1 610 -95 275 167 0 15 chr12 73553016 73553082 -70233373 - L1PB3 LINE L1 -3 6151 6087 * 1387 146 21 9 chr12 73553070 73553303 -70233152 - L1PB3 LINE L1 -22 6132 5897 243 271 24 0 chr12 73553305 73553390 -70233065 - L1 LINE L1 -986 5876 5790 2836 130 12 0 chr12 73553417 73553841 -70232614 - MER57B LTR ERV1 -5 429 1 11917 143 95 65 chr12 73553841 73557827 -70228628 - MER57B-int LTR ERV1 0 7537 2167 959 144 0 7 chr12 73557823 73557976 -70228479 - MER57B-int LTR ERV1 -3929 2017 1866 * 2679 150 39 19 chr12 73557980 73558501 -70227954 - MER57B-int LTR ERV1 -4232 3584 648 3622 142 61 0 chr12 73558522 73559080 -70227375 - MER57B-int LTR ERV1 -5067 879 288 * 4262 146 23 1 chr12 73559077 73559735 -70226720 - MER57B-int LTR ERV1 -6865 672 1 2845 126 7 5 chr12 73559740 73560168 -70226287 - MER57B LTR ERV1 -5 429 1 2947 204 9 12 chr12 73560168 73560856 -70225599 - L1 LINE L1 -1069 5793 5108 2468 188 40 14 chr12 73560870 73562064 -70224391 - L1PBa LINE L1 -3364 3498 2229 658 280 9 28 chr12 73562057 73562275 -70224180 - L1PBa LINE L1 -5421 1442 1229 * 1530 317 48 16 chr12 73562249 73562994 -70223461 - L1PBa LINE L1 -6092 771 3 384 119 0 0 chr12 73563004 73563063 -70223392 + (TA)n Simple_repeat Simple_repeat 2 60 0 631 183 0 38 chr12 73563063 73563194 -70223261 + Tigger7 DNA MER2_type 2362 2487 0 634 278 38 34 chr12 73563625 73563834 -70222621 - MIR SINE MIR -16 246 37 236 312 193 0 chr12 73563877 73563986 -70222469 + L2 LINE L2 3125 3254 -18 1402 153 13 13 chr12 73564048 73564284 -70222171 - Tigger2 DNA MER2_type 0 2718 2483 4104 135 57 22 chr12 73564357 73565082 -70221373 - Tigger2 DNA MER2_type -1968 750 1 21 57 0 0 chr12 73565108 73565143 -70221312 + AT_rich Low_complexity Low_complexity 1 35 0 1837 180 0 7 chr12 73566971 73567277 -70219178 - AluJo SINE Alu -7 305 2 194 243 27 54 chr12 73567929 73567954 -70218501 + L2 LINE L2 3242 3266 -47 429 20 0 0 chr12 73567954 73568004 -70218451 + (CA)n Simple_repeat Simple_repeat 2 51 0 194 243 27 54 chr12 73568004 73568052 -70218403 + L2 LINE L2 3266 3313 0 328 199 75 116 chr12 73568245 73568391 -70218064 - MIR SINE MIR -79 183 44 684 278 39 26 chr12 73568578 73568812 -70217643 - MIR SINE MIR 0 262 26 1419 212 39 12 chr12 73570069 73570399 -70216056 + MER58B DNA MER1_type 2 340 -1 292 372 26 9 chr12 73570811 73570924 -70215531 - MIR3 SINE MIR -81 127 13 658 100 9 9 chr12 73572180 73572290 -70214165 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 1736 114 95 16 chr12 73572967 73573273 -70213182 + L1MC1 LINE L1 6002 6331 -2 400 242 133 0 chr12 73574249 73574369 -70212086 + MIR SINE MIR 93 228 -34 419 229 9 145 chr12 73574530 73574757 -70211698 - HAL1 LINE L1 -778 1729 1534 1228 268 22 6 chr12 73574774 73575095 -70211360 + L1M3a LINE L1 11 336 -5619 9354 155 57 9 chr12 73575099 73578702 -70207753 - L1PBa LINE L1 -2940 3922 2 5643 146 36 30 chr12 73578717 73579040 -70207415 + L1MA9 LINE L1 4990 5309 -1003 1951 133 10 17 chr12 73579040 73579333 -70207122 + AluJo SINE Alu 1 291 -21 5643 146 36 30 chr12 73579333 73580311 -70206144 + L1MA9 LINE L1 5309 6309 -3 565 241 156 0 chr12 73580369 73580606 -70205849 - HAL1 LINE L1 -1087 1420 1147 234 0 0 0 chr12 73580624 73580650 -70205805 + (TG)n Simple_repeat Simple_repeat 1 26 0 1313 181 57 34 chr12 73580669 73580934 -70205521 - AluJb SINE Alu -37 275 5 2726 262 86 34 chr12 73580938 73582060 -70204395 - HAL1 LINE L1 -1320 1187 8 318 334 139 36 chr12 73582141 73582581 -70203874 + L2 LINE L2 1934 2418 -896 270 143 0 0 chr12 73582699 73582748 -70203707 + (TG)n Simple_repeat Simple_repeat 2 50 0 717 191 0 0 chr12 73582845 73582986 -70203469 - L1 LINE L1 -1556 4590 4450 10997 178 17 49 chr12 73583043 73584509 -70201946 - L1PB3 LINE L1 -4 6866 5355 234 0 0 0 chr12 73584509 73584535 -70201920 + (TTG)n Simple_repeat Simple_repeat 2 27 0 10997 178 17 49 chr12 73584535 73585865 -70200590 - L1PB3 LINE L1 -1515 5355 3984 216 0 0 0 chr12 73585865 73585889 -70200566 + (TTA)n Simple_repeat Simple_repeat 1 24 0 10997 178 17 49 chr12 73585889 73586332 -70200123 - L1PB3 LINE L1 -2886 3984 3768 2160 113 7 0 chr12 73586332 73586625 -70199830 - AluSg SINE Alu -15 295 1 10997 178 17 49 chr12 73586625 73587096 -70199359 - L1PB3 LINE L1 -3102 3768 3284 3615 141 58 12 chr12 73587100 73587769 -70198686 - L1PB3 LINE L1 -5175 1688 989 661 237 0 0 chr12 73587769 73587921 -70198534 - L1PB3 LINE L1 -6709 154 3 191 376 64 8 chr12 73587943 73588068 -70198387 + L2 LINE L2 2684 2815 -499 700 325 48 8 chr12 73588247 73588499 -70197956 + MIR SINE MIR 1 262 0 433 325 60 6 chr12 73588537 73588703 -70197752 + L2 LINE L2 3098 3272 0 1578 172 52 49 chr12 73588741 73589166 -70197289 + LTR37A LTR ERV1 1 426 0 275 227 76 67 chr12 73590256 73590375 -70196080 - MIR SINE MIR 0 262 143 258 332 124 36 chr12 73590383 73590657 -70195798 + L2 LINE L2 2947 3244 -69 1785 232 60 5 chr12 73591984 73592420 -70194035 + LTR40b LTR ERVL 3 462 0 5208 169 44 24 chr12 73592632 73593378 -70193077 + L1MC2 LINE L1 5185 5962 -382 2302 90 7 0 chr12 73593378 73593678 -70192777 + AluSg SINE Alu 1 302 -8 5208 169 44 24 chr12 73593678 73594060 -70192395 + L1MC2 LINE L1 5962 6335 -9 22 56 0 0 chr12 73594842 73594878 -70191577 + AT_rich Low_complexity Low_complexity 1 36 0 1321 101 18 9 chr12 73594992 73595209 -70191246 - L1MA1 LINE L1 -105 6197 5979 1033 304 84 11 chr12 73595711 73596151 -70190304 + L2 LINE L2 1756 2227 -1087 2551 131 18 55 chr12 73596151 73596465 -70189990 + MER57B LTR ERV1 1 294 -140 6206 55 17 43 chr12 73596465 73597325 -70189130 + L1PA7 LINE L1 5302 6139 -15 2551 131 18 55 chr12 73597325 73597461 -70188994 + MER57B LTR ERV1 294 434 0 835 305 136 31 chr12 73597462 73598297 -70188158 + L2 LINE L2 2225 3259 -54 222 250 0 19 chr12 73598308 73598360 -70188095 - L2 LINE L2 -37 3235 3185 463 264 93 0 chr12 73598415 73598555 -70187900 - L2 LINE L2 -2 3311 3159 5616 107 59 71 chr12 73598605 73600200 -70186255 + pTR5 LTR ERV1 740 2438 0 612 308 101 8 chr12 73600202 73600439 -70186016 - L2 LINE L2 -342 2972 2714 24 0 0 0 chr12 73600972 73600996 -70185459 + AT_rich Low_complexity Low_complexity 1 24 0 368 333 16 16 chr12 73603849 73603972 -70182483 + L2 LINE L2 3187 3309 -4 266 291 90 15 chr12 73604605 73604739 -70181716 + MIR3 SINE MIR 16 159 -49 186 371 96 32 chr12 73605033 73605313 -70181142 - L2 LINE L2 -52 3220 2923 231 61 0 0 chr12 73609097 73609130 -70177325 + (T)n Simple_repeat Simple_repeat 1 33 0 1851 224 86 91 chr12 73609207 73609352 -70177103 - L1MC5 LINE L1 -133 7828 7684 2269 92 0 3 chr12 73609352 73609644 -70176811 + AluSg SINE Alu 3 293 -17 1851 224 86 91 chr12 73609644 73610598 -70175857 - L1MC5 LINE L1 -277 7684 6734 2103 116 0 3 chr12 73611024 73611354 -70175101 - AluSx SINE Alu 0 329 1 740 184 7 14 chr12 73612758 73612905 -70173550 + MIR SINE MIR 62 207 -55 341 344 70 23 chr12 73613113 73613328 -70173127 + MIR SINE MIR 28 252 -10 516 279 35 6 chr12 73613556 73613728 -70172727 + MER115 DNA AcHobo 502 678 -15 2482 71 0 0 chr12 73614020 73614314 -70172141 + AluY SINE Alu 3 296 -15 1916 129 100 29 chr12 73614367 73614707 -70171748 - THE1B LTR MaLR 0 364 1 4272 101 45 90 chr12 73614738 73615826 -70170629 - MER11A LTR ERVK 0 1266 1 1974 93 0 15 chr12 73615994 73616253 -70170202 - AluSq SINE Alu -13 300 46 549 307 66 85 chr12 73616494 73617083 -70169372 + HAL1b LINE L1 69 481 -867 1372 209 87 28 chr12 73618220 73618575 -70167880 - MLT1B LTR MaLR -10 380 5 26 64 0 0 chr12 73618808 73618855 -70167600 + AT_rich Low_complexity Low_complexity 1 47 0 251 279 33 16 chr12 73620035 73620096 -70166359 + MIR3 SINE MIR 116 177 -31 241 338 0 0 chr12 73622497 73622574 -70163881 + CT-rich Low_complexity Low_complexity 4 80 0 22 0 0 0 chr12 73622928 73622950 -70163505 + AT_rich Low_complexity Low_complexity 1 22 0 302 339 31 39 chr12 73624153 73624283 -70162172 - MIR3 SINE MIR -9 199 71 961 197 29 66 chr12 73624898 73625142 -70161313 - L1ME2 LINE L1 -105 6059 5825 595 219 8 16 chr12 73625353 73625481 -70160974 + L2 LINE L2 3186 3312 -1 237 65 0 0 chr12 73625882 73625913 -70160542 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 372 308 0 62 chr12 73626635 73626765 -70159690 - MER5A DNA MER1_type -30 159 38 185 91 0 30 chr12 73627745 73627768 -70158687 + (TC)n Simple_repeat Simple_repeat 2 25 -8 2056 115 0 20 chr12 73627768 73628064 -70158391 - AluSx SINE Alu -22 290 1 185 91 0 30 chr12 73628064 73628073 -70158382 + (TC)n Simple_repeat Simple_repeat 25 33 0 21 0 0 0 chr12 73628075 73628096 -70158359 + AT_rich Low_complexity Low_complexity 1 21 0 1511 192 0 34 chr12 73628096 73628388 -70158067 - AluJo SINE Alu -26 286 5 577 219 196 58 chr12 73628442 73628666 -70157789 - MIR SINE MIR -2 260 6 573 365 86 38 chr12 73628896 73629372 -70157083 - L3 LINE CR1 -1 1576 1078 534 205 6 19 chr12 73629807 73629968 -70156487 + CT-rich Low_complexity Low_complexity 3 161 0 846 126 0 33 chr12 73629991 73630174 -70156281 + (TCC)n Simple_repeat Simple_repeat 2 178 0 633 356 106 0 chr12 73630791 73631083 -70155372 - L3 LINE CR1 -623 954 632 312 238 46 93 chr12 73631156 73631307 -70155148 - MIR SINE MIR -15 247 104 24 32 0 0 chr12 73631337 73631368 -70155087 + AT_rich Low_complexity Low_complexity 1 31 0 2149 103 0 10 chr12 73631996 73632298 -70154157 + AluSc SINE Alu 1 299 -10 483 338 15 68 chr12 73633340 73633606 -70152849 - L2 LINE L2 0 3272 3021 184 326 206 35 chr12 73633672 73633813 -70152642 - L2 LINE L2 -1 3271 3107 1743 179 0 6 chr12 73635128 73635440 -70151015 + AluJb SINE Alu 3 312 0 22 35 0 0 chr12 73635633 73635662 -70150793 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 73636715 73636739 -70149716 + AT_rich Low_complexity Low_complexity 1 24 0 441 223 90 21 chr12 73640707 73640810 -70145645 - L1ME3 LINE L1 -1 6169 6049 719 209 0 8 chr12 73640810 73640944 -70145511 + FLAM_A SINE Alu 1 133 0 441 223 90 21 chr12 73640944 73640991 -70145464 - L1ME3 LINE L1 -121 6049 6007 682 205 4 164 chr12 73640992 73641236 -70145219 - MER63A DNA MER1_type 0 210 6 36497 31 1 1 chr12 73641277 73646532 -70139923 - L1PA2 LINE L1 0 6155 900 205 211 18 18 chr12 73646566 73646623 -70139832 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 25 0 0 0 chr12 73646705 73646730 -70139725 + AT_rich Low_complexity Low_complexity 1 25 0 1242 167 23 9 chr12 73646833 73647048 -70139407 - MLT2B2 LTR ERVL -8 507 290 437 313 154 28 chr12 73647065 73647461 -70138994 + L1MC4a LINE L1 4724 5169 -977 294 263 18 26 chr12 73647576 73647690 -70138765 + L1MC4a LINE L1 5254 5366 -2442 687 188 0 43 chr12 73647694 73647832 -70138623 + FLAM_C SINE Alu 1 132 -11 1874 268 68 46 chr12 73647843 73648650 -70137805 + L1MC4a LINE L1 5401 6225 -1583 392 224 0 0 chr12 73648666 73648742 -70137713 - Tigger5 DNA MER2_type -6 2317 2242 304 270 27 0 chr12 73648732 73648806 -70137649 + Tigger5 DNA MER2_type 2242 2317 -6 * 435 208 13 0 chr12 73648808 73648885 -70137570 - Tigger5 DNA MER2_type -2244 79 2 576 297 55 50 chr12 73648921 73649338 -70137117 + L1MC4a LINE L1 6292 6710 -1098 1982 173 28 6 chr12 73649383 73649735 -70136720 + MLT1A1 LTR MaLR 1 360 -5 347 244 37 37 chr12 73649782 73649946 -70136509 + L1MC5 LINE L1 7262 7425 -536 227 260 104 21 chr12 73650513 73650609 -70135846 + L1MC4 LINE L1 7520 7623 -419 240 35 0 0 chr12 73650611 73650640 -70135815 + (A)n Simple_repeat Simple_repeat 1 29 0 19300 163 40 10 chr12 73650947 73657906 -70128549 + L1MA2 LINE L1 11 7228 -495 1987 150 3 0 chr12 73657906 73658212 -70128243 + AluSx SINE Alu 5 311 -1 19300 163 40 10 chr12 73658212 73658724 -70127731 + L1MA2 LINE L1 7228 7723 0 255 294 0 0 chr12 73659433 73659501 -70126954 - L1ME LINE L1 -484 5686 5619 645 321 52 44 chr12 73659649 73660054 -70126401 - L1MEd LINE L1 -5458 661 254 343 291 54 31 chr12 73660480 73660741 -70125714 - L1ME LINE L1 -1319 4827 4561 1118 257 185 43 chr12 73660800 73661204 -70125251 + L1ME3 LINE L1 2418 2763 -3383 3775 126 20 10 chr12 73661204 73661800 -70124655 + LTR43 LTR ERV1 1 602 0 1118 257 185 43 chr12 73661800 73662304 -70124151 + L1ME3 LINE L1 2763 3455 -2691 1318 256 67 36 chr12 73662306 73662918 -70123537 + L1ME3 LINE L1 4258 4888 -1258 490 227 333 3 chr12 73662929 73663211 -70123244 - LTR50 LTR ERVL 0 795 421 * 889 198 108 22 chr12 73663207 73663439 -70123016 - LTR50 LTR ERVL -543 252 1 900 286 43 3 chr12 73663441 73663766 -70122689 + L1ME3 LINE L1 4896 5233 -913 1982 261 95 24 chr12 73663925 73664249 -70122206 + L1ME3 LINE L1 5255 5555 -607 558 256 0 16 chr12 73664249 73664374 -70122081 + FLAM_A SINE Alu 1 123 -10 1982 261 95 24 chr12 73664374 73664797 -70121658 + L1ME3 LINE L1 5555 6055 -107 342 335 199 5 chr12 73664879 73665085 -70121370 - MIR SINE MIR -2 260 15 185 333 154 0 chr12 73665218 73665335 -70121120 - L2 LINE L2 0 3313 3179 1465 259 51 60 chr12 73665777 73666566 -70119889 - L1M4 LINE L1 -4960 1582 801 233 314 12 0 chr12 73666583 73666669 -70119786 + L1ME3 LINE L1 6041 6127 -35 * 1599 199 9 0 chr12 73666667 73666983 -70119472 - L1 LINE L1 -2093 4053 3735 1245 217 53 0 chr12 73667011 73667310 -70119145 + L1M3b LINE L1 1072 1386 -4895 485 349 87 40 chr12 73667741 73668119 -70118336 - L1MEd LINE L1 -5556 563 168 245 398 57 32 chr12 73668268 73668391 -70118064 + L2 LINE L2 3127 3252 -20 21 0 0 0 chr12 73668654 73668675 -70117780 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 73669747 73669776 -70116679 + AT_rich Low_complexity Low_complexity 1 29 0 1596 215 18 12 chr12 73669990 73670329 -70116126 + MER58B DNA MER1_type 1 341 0 246 370 23 30 chr12 73670882 73671144 -70115311 + L2 LINE L2 2716 2975 -339 661 294 6 0 chr12 73671172 73671335 -70115120 + MLT1K LTR MaLR 167 330 -258 249 180 0 0 chr12 73671366 73671416 -70115039 + MLT1K LTR MaLR 522 571 -17 394 263 33 13 chr12 73672538 73672690 -70113765 - L1ME4a LINE L1 -1 6120 5966 184 369 48 12 chr12 73672922 73673006 -70113449 + MIR SINE MIR 9 95 -167 232 292 189 11 chr12 73673021 73673206 -70113249 - L2 LINE L2 -4 3309 3092 230 283 217 11 chr12 73673222 73673314 -70113141 + L2 LINE L2 3160 3270 -2 535 283 72 30 chr12 73674581 73674747 -70111708 + L2 LINE L2 2672 2844 -470 327 247 75 0 chr12 73674769 73674862 -70111593 + L2 LINE L2 3214 3313 0 534 250 28 17 chr12 73674883 73675059 -70111396 - MER5B DNA MER1_type 0 178 1 694 285 75 7 chr12 73676129 73676410 -70110045 + MER46C DNA MER2_type 1 300 -38 464 248 0 72 chr12 73676727 73676880 -70109575 + FLAM_A SINE Alu 1 142 0 217 294 35 47 chr12 73677559 73677644 -70108811 - MIR3 SINE MIR -5 203 120 25 0 0 0 chr12 73678040 73678065 -70108390 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 73678323 73678345 -70108110 + AT_rich Low_complexity Low_complexity 1 22 0 32 81 0 0 chr12 73678376 73678450 -70108005 + AT_rich Low_complexity Low_complexity 1 74 0 2453 168 180 120 chr12 73678450 73678985 -70107470 - L1MD3 LINE L1 -18 7977 7476 499 169 111 27 chr12 73678985 73679098 -70107357 - MLT1F1 LTR MaLR -459 108 9 2453 168 180 120 chr12 73679098 73679437 -70107018 - L1MD3 LINE L1 -519 7476 6931 1071 263 111 47 chr12 73680289 73680795 -70105660 - L2 LINE L2 -12 3301 2777 210 296 14 14 chr12 73682336 73682407 -70104048 + GA-rich Low_complexity Low_complexity 2 72 0 1337 189 39 8 chr12 73685061 73685413 -70101042 + MSTA LTR MaLR 1 428 0 1419 242 88 57 chr12 73685464 73685784 -70100671 - L1ME3A LINE L1 -98 6072 5763 2266 86 3 10 chr12 73685784 73686097 -70100358 - AluY SINE Alu 0 311 1 1419 242 88 57 chr12 73686097 73686371 -70100084 - L1ME3A LINE L1 -407 5763 5446 2182 120 63 20 chr12 73686371 73686720 -70099735 - THE1B LTR MaLR 0 364 1 1419 242 88 57 chr12 73686720 73686893 -70099562 - L1ME3A LINE L1 -724 5446 5280 21 36 0 0 chr12 73687163 73687191 -70099264 + AT_rich Low_complexity Low_complexity 1 28 0 297 233 6 50 chr12 73688771 73688930 -70097525 + C-rich Low_complexity Low_complexity 1 152 0 610 356 106 0 chr12 73689212 73689504 -70096951 - L3 LINE CR1 -623 954 632 292 238 46 93 chr12 73689577 73689728 -70096727 - MIR SINE MIR -15 247 104 24 32 0 0 chr12 73689758 73689789 -70096666 + AT_rich Low_complexity Low_complexity 1 31 0 2199 103 0 10 chr12 73690417 73690719 -70095736 + AluSc SINE Alu 1 299 -10 499 335 15 68 chr12 73691761 73692027 -70094428 - L2 LINE L2 0 3272 3021 184 326 206 35 chr12 73692093 73692234 -70094221 - L2 LINE L2 -1 3271 3107 1798 177 0 7 chr12 73693548 73693858 -70092597 + AluJb SINE Alu 3 310 -2 22 35 0 0 chr12 73694054 73694083 -70092372 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 73695135 73695159 -70091296 + AT_rich Low_complexity Low_complexity 1 24 0 425 223 90 20 chr12 73699128 73699231 -70087224 - L1ME3 LINE L1 -1 6169 6049 718 212 0 8 chr12 73699231 73699363 -70087092 + FLAM_A SINE Alu 1 131 -2 425 223 90 20 chr12 73699363 73699415 -70087040 - L1ME3 LINE L1 -121 6049 6002 616 206 0 91 chr12 73699490 73699655 -70086800 - MER63 DNA MER1_type -55 781 6 40543 35 22 2 chr12 73699697 73705726 -70080729 - L1PA2 LINE L1 0 6155 2 1539 227 58 24 chr12 73705717 73706122 -70080333 - L1ME3 LINE L1 -174 5996 5572 * 2305 86 3 3 chr12 73706122 73706424 -70080031 - AluY SINE Alu -9 302 1 1539 227 58 24 chr12 73706424 73706481 -70079974 - L1ME3 LINE L1 -598 5572 5518 748 191 21 26 chr12 73706623 73706817 -70079638 + AluY SINE Alu 1 193 -118 228 172 0 0 chr12 73706823 73706881 -70079574 + G-rich Low_complexity Low_complexity 1 58 0 2172 69 0 0 chr12 73707036 73707296 -70079159 + AluY SINE Alu 43 302 -9 687 281 45 18 chr12 73707307 73707531 -70078924 - MIR SINE MIR -18 244 15 233 330 62 50 chr12 73707533 73707712 -70078743 + L2 LINE L2 3114 3294 -19 777 251 95 16 chr12 73707722 73707965 -70078490 - MIR SINE MIR 0 262 1 1217 241 50 34 chr12 73708145 73708502 -70077953 - MLT1A2 LTR MaLR -11 363 1 882 258 130 40 chr12 73708502 73708908 -70077547 - LTR33A LTR ERVL -76 447 4 2049 153 83 0 chr12 73708919 73709291 -70077164 + MER57A LTR ERV1 1 403 0 1176 158 18 27 chr12 73709469 73709690 -70076765 + MER20 DNA MER1_type 1 219 0 27 29 0 0 chr12 73710116 73710150 -70076305 + AT_rich Low_complexity Low_complexity 1 34 0 2270 93 29 86 chr12 73710581 73710967 -70075488 + THE1B LTR MaLR 1 364 0 11444 99 17 5 chr12 73710968 73712528 -70073927 + THE1B-int LTR MaLR 2 1579 -1 2370 125 8 22 chr12 73712529 73712897 -70073558 + THE1B LTR MaLR 1 363 -1 330 284 192 35 chr12 73712971 73713288 -70073167 + L2 LINE L2 2935 3301 -12 625 281 120 16 chr12 73713374 73713566 -70072889 - MIR SINE MIR -1 261 50 1419 217 169 56 chr12 73713572 73714315 -70072140 + LTR1B LTR ERV1 1 826 0 207 0 0 0 chr12 73714620 73714643 -70071812 + (T)n Simple_repeat Simple_repeat 1 23 0 599 264 78 16 chr12 73714897 73715090 -70071365 + MIR SINE MIR 14 218 -44 1955 152 35 55 chr12 73716985 73717098 -70069357 + MSTD LTR MaLR 1 115 -281 4062 166 29 94 chr12 73717098 73718021 -70068434 - MER21B LTR ERV1 0 863 1 1955 152 35 55 chr12 73718021 73718309 -70068146 + MSTD LTR MaLR 115 394 -2 982 228 90 21 chr12 73719353 73719399 -70067056 - L1ME3A LINE L1 -1 6169 6128 2606 200 32 21 chr12 73719399 73719960 -70066495 + MLT1F1 LTR MaLR 1 567 0 982 228 90 21 chr12 73719960 73720291 -70066164 - L1ME3A LINE L1 -42 6128 5766 25013 32 16 1 chr12 73720527 73726559 -70059896 - L1PA2 LINE L1 0 6155 2 1481 218 63 24 chr12 73726552 73726953 -70059502 - L1ME3 LINE L1 -168 5994 5571 * 2337 79 3 3 chr12 73726953 73727256 -70059199 - AluY SINE Alu -8 303 1 1481 218 63 24 chr12 73727256 73727313 -70059142 - L1ME3 LINE L1 -591 5571 5518 2518 73 0 0 chr12 73727456 73727758 -70058697 + AluY SINE Alu 1 302 -9 698 307 27 4 chr12 73727769 73727994 -70058461 - MIR SINE MIR -18 244 15 222 280 15 45 chr12 73728160 73728292 -70058163 + G-rich Low_complexity Low_complexity 2 129 0 447 285 49 46 chr12 73728608 73728871 -70057584 + L1M3a LINE L1 73 336 -5619 4462 176 59 10 chr12 73728875 73729466 -70056989 - L1PBa LINE L1 -2940 3922 3361 183 42 0 0 chr12 73729466 73729490 -70056965 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4462 176 59 10 chr12 73729490 73730627 -70055828 - L1PBa LINE L1 -3501 3361 2107 639 120 0 24 chr12 73731324 73731449 -70055006 + (TCC)n Simple_repeat Simple_repeat 1 122 0 564 361 110 0 chr12 73732046 73732337 -70054118 - L3 LINE CR1 -623 954 632 2679 52 0 0 chr12 73733241 73733585 -70052870 + L1PA5 LINE L1 5604 5947 -207 2259 167 107 3 chr12 73733603 73735471 -70050984 + SATR1 Satellite Satellite 1 2062 0 2120 161 105 6 chr12 73735493 73736639 -70049816 + SATR1 Satellite Satellite 1 1260 -27 1405 179 66 50 chr12 73737085 73737199 -70049256 + AluJo SINE Alu 1 112 -200 180 77 0 0 chr12 73737199 73737225 -70049230 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1405 179 66 50 chr12 73737225 73737412 -70049043 + AluJo SINE Alu 112 307 -5 1077 69 0 0 chr12 73737412 73737543 -70048912 + AluSq/x SINE Alu 3 133 -179 1860 132 54 0 chr12 73738672 73738967 -70047488 + AluSq SINE Alu 1 311 -2 262 270 16 0 chr12 73740324 73740387 -70046068 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chr12 73740974 73740995 -70045460 + AT_rich Low_complexity Low_complexity 1 21 0 1052 175 86 123 chr12 73741202 73741607 -70044848 + MLT1B LTR MaLR 1 390 0 195 336 53 18 chr12 73741619 73741732 -70044723 + MIR SINE MIR 74 190 -72 1695 153 11 14 chr12 73741758 73742033 -70044422 + AluSx SINE Alu 24 297 -15 265 351 36 0 chr12 73742095 73742206 -70044249 - L3 LINE CR1 -124 1453 1339 2028 150 193 7 chr12 73742393 73742819 -70043636 - LTR27 LTR ERV1 -130 506 2 606 186 34 45 chr12 73744026 73744203 -70042252 - MER104 DNA Tc2 -5 175 1 380 295 60 12 chr12 73744206 73744372 -70042083 + L2 LINE L2 3113 3286 -27 1989 202 218 93 chr12 73745108 73745989 -70040466 + LTR28 LTR ERV1 30 1020 0 284 295 57 19 chr12 73747489 73747594 -70038861 - L2 LINE L2 -33 3280 3172 1142 306 44 26 chr12 73747687 73748230 -70038225 - MLT1K LTR MaLR -26 562 10 334 108 0 46 chr12 73748365 73748430 -70038025 - MLT1J2 LTR MaLR -332 118 57 182 261 22 65 chr12 73748500 73748592 -70037863 - L2 LINE L2 -213 3059 2972 306 354 0 0 chr12 73749077 73749173 -70037282 - L2 LINE L2 -18 3295 3200 202 61 41 61 chr12 73749726 73749775 -70036680 + (CCCCCA)n Simple_repeat Simple_repeat 3 50 0 749 273 92 76 chr12 73750843 73751224 -70035231 - L2 LINE L2 0 3272 2886 1073 326 48 10 chr12 73751229 73751643 -70034812 + L2 LINE L2 2226 2655 -659 247 293 236 17 chr12 73751611 73751785 -70034670 + L2 LINE L2 3099 3310 -3 * 440 342 10 36 chr12 73751790 73751807 -70034648 - L2 LINE L2 -424 2890 2874 2404 161 46 2 chr12 73751807 73752217 -70034238 + MSTA LTR MaLR 1 428 0 440 342 10 36 chr12 73752217 73752395 -70034060 - L2 LINE L2 -440 2874 2700 21 82 0 0 chr12 73752605 73752654 -70033801 + AT_rich Low_complexity Low_complexity 1 49 0 329 200 24 0 chr12 73752945 73753030 -70033425 + MER103 DNA DNA 59 145 -21 2602 118 33 19 chr12 73753059 73753481 -70032974 - MSTA LTR MaLR 0 428 1 340 221 31 25 chr12 73753615 73753778 -70032677 + (TGGG)n Simple_repeat Simple_repeat 3 166 0 * 397 177 10 73 chr12 73753742 73753934 -70032521 + G-rich Low_complexity Low_complexity 1 180 0 * 424 196 28 28 chr12 73753794 73753973 -70032482 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 25 105 0 0 chr12 73754662 73754757 -70031698 + AT_rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr12 73755275 73755308 -70031147 + AT_rich Low_complexity Low_complexity 1 33 0 190 297 40 27 chr12 73755685 73755759 -70030696 + L2 LINE L2 2924 2998 -274 186 189 0 0 chr12 73756241 73756278 -70030177 + (CA)n Simple_repeat Simple_repeat 2 38 0 838 271 126 53 chr12 73756582 73756995 -70029460 - MLT1E LTR MaLR -10 614 172 495 243 18 0 chr12 73757049 73757160 -70029295 - MLT1E LTR MaLR -534 120 8 246 235 0 0 chr12 73758778 73758829 -70027626 + (TATG)n Simple_repeat Simple_repeat 3 53 0 2831 0 0 0 chr12 73759104 73759407 -70027048 - AluYa5 SINE Alu -8 303 1 213 178 0 0 chr12 73759864 73759909 -70026546 + (TA)n Simple_repeat Simple_repeat 1 45 0 853 259 58 37 chr12 73759992 73760317 -70026138 - LTR16C LTR ERVL 0 491 160 283 384 9 0 chr12 73762902 73763014 -70023441 - MIR3 SINE MIR -9 199 87 223 312 12 12 chr12 73763399 73763500 -70022955 - MIR SINE MIR -62 146 50 357 256 23 0 chr12 73763956 73764042 -70022413 - MIR3 SINE MIR -36 172 85 21 0 0 0 chr12 73764368 73764389 -70022066 + AT_rich Low_complexity Low_complexity 1 21 0 1045 284 37 36 chr12 73764875 73765620 -70020835 - L1ME3A LINE L1 -268 5902 5164 939 260 80 63 chr12 73765628 73766464 -70019991 + L1M4 LINE L1 3628 4477 -1669 306 243 14 0 chr12 73767115 73767185 -70019270 - MIR SINE MIR -3 259 189 430 298 0 118 chr12 73767257 73767435 -70019020 + MIR SINE MIR 1 157 -105 1240 290 127 15 chr12 73767446 73767981 -70018474 + MLT1G1 LTR MaLR 1 595 0 831 271 90 24 chr12 73767983 73768291 -70018164 - MLT1G1 LTR MaLR -273 300 7 193 188 174 43 chr12 73768303 73768372 -70018083 + MIR SINE MIR 185 262 0 277 361 18 6 chr12 73768875 73769044 -70017411 - L1MC/D LINE L1 -2204 5604 5434 923 92 0 0 chr12 73769927 73770058 -70016397 - AluY SINE Alu 0 311 181 251 248 88 15 chr12 73770060 73770197 -70016258 - L1MC/D LINE L1 -1469 4677 4531 219 261 0 15 chr12 73771231 73771296 -70015159 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 970 120 23 17 chr12 73771954 73772129 -70014326 + L1MA4 LINE L1 6125 6300 0 21 36 0 0 chr12 73772129 73772157 -70014298 + AT_rich Low_complexity Low_complexity 1 28 0 209 218 140 26 chr12 73773938 73774052 -70012403 - MIR SINE MIR -25 183 52 1442 129 26 0 chr12 73774679 73774911 -70011544 - L1PA10 LINE L1 -5 6163 5926 1838 75 43 0 chr12 73774911 73775189 -70011266 + L1PA10 LINE L1 5637 5926 -242 30 27 0 0 chr12 73776321 73776358 -70010097 + AT_rich Low_complexity Low_complexity 1 37 0 1832 139 43 0 chr12 73776433 73776713 -70009742 - AluSx SINE Alu -18 294 3 246 330 0 0 chr12 73778264 73778373 -70008082 + C-rich Low_complexity Low_complexity 1 109 0 654 139 0 43 chr12 73778374 73778561 -70007894 + (C)n Simple_repeat Simple_repeat 1 179 0 464 326 42 10 chr12 73778873 73779066 -70007389 + L2 LINE L2 2477 2675 -639 598 329 135 4 chr12 73779317 73779554 -70006901 + L2 LINE L2 3001 3268 -4 272 26 0 26 chr12 73780261 73780299 -70006156 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2008 134 0 0 chr12 73780301 73780584 -70005871 - AluSx SINE Alu -29 283 1 1887 127 9 94 chr12 73781264 73781604 -70004851 - AluSq SINE Alu -2 311 1 850 217 103 0 chr12 73781604 73781878 -70004577 - MER33 DNA MER1_type -31 293 1 30 27 0 0 chr12 73782816 73782853 -70003602 + AT_rich Low_complexity Low_complexity 1 37 0 581 321 50 33 chr12 73782993 73783157 -70003298 - MLT1J LTR MaLR -5 506 333 1436 313 66 31 chr12 73783157 73783827 -70002628 + MER115 DNA AcHobo 1 693 0 581 321 50 33 chr12 73783827 73783961 -70002494 - MLT1J LTR MaLR -178 333 203 275 233 87 39 chr12 73783996 73784099 -70002356 - MLT1J LTR MaLR -395 116 9 1846 141 10 3 chr12 73785424 73785714 -70000741 - AluJb SINE Alu -6 306 15 233 247 47 12 chr12 73785786 73785871 -70000584 - MLT1J LTR MaLR -45 466 379 371 274 11 0 chr12 73786048 73786143 -70000312 - MLT1J LTR MaLR -332 179 84 225 0 0 0 chr12 73787229 73787254 -69999201 + (TG)n Simple_repeat Simple_repeat 2 26 0 482 302 84 19 chr12 73787534 73787749 -69998706 - MIR SINE MIR -29 233 5 1279 215 15 4 chr12 73788402 73788672 -69997783 - MLT1E1 LTR MaLR 0 654 382 387 263 61 34 chr12 73788672 73788924 -69997531 + L1MA10 LINE L1 5927 6333 -1 2278 69 0 57 chr12 73789212 73789530 -69996925 + AluY SINE Alu 1 300 -11 1179 129 106 0 chr12 73789823 73790040 -69996415 - SATR1 Satellite Satellite -53 417 178 2072 64 0 7 chr12 73790041 73790468 -69995987 - L1P3 LINE L1 -633 5521 5097 593 113 84 56 chr12 73791155 73791297 -69995158 - LTR45B LTR ERV1 -1 488 343 223 250 0 13 chr12 73791857 73791954 -69994501 + CT-rich Low_complexity Low_complexity 1 95 0 2610 229 38 50 chr12 73792073 73792936 -69993519 + MER45R DNA AcHobo 16 868 -713 257 75 75 0 chr12 73792943 73792983 -69993472 + T-rich Low_complexity Low_complexity 1 43 0 606 119 45 0 chr12 73792983 73793117 -69993338 + CT-rich Low_complexity Low_complexity 2 141 0 1131 119 0 0 chr12 73793131 73793307 -69993148 + (TC)n Simple_repeat Simple_repeat 2 177 0 1524 238 0 7 chr12 73793307 73793606 -69992849 - AluJb SINE Alu -15 297 1 2857 153 46 39 chr12 73793606 73794307 -69992148 + MER45R DNA AcHobo 867 1572 -9 196 352 0 0 chr12 73794896 73794967 -69991488 - L2 LINE L2 -481 2833 2763 1572 78 0 0 chr12 73795961 73796166 -69990289 - L1PA7 LINE L1 -8 6146 5942 311 233 10 0 chr12 73796726 73796829 -69989626 + (TA)n Simple_repeat Simple_repeat 1 104 0 2304 99 7 0 chr12 73797436 73797730 -69988725 + AluSg SINE Alu 1 296 -14 180 244 0 22 chr12 73797816 73797861 -69988594 - MIR SINE MIR -129 79 36 1331 312 56 26 chr12 73798198 73798865 -69987590 + L2 LINE L2 2194 2954 -359 253 306 129 42 chr12 73799186 73799379 -69987076 + LTR16B LTR ERVL 107 316 -148 498 337 72 27 chr12 73799460 73799834 -69986621 - L2 LINE L2 -31 3282 2892 280 348 0 0 chr12 73799847 73799936 -69986519 - MIR SINE MIR -20 242 154 530 272 144 60 chr12 73799936 73800400 -69986055 - LTR33 LTR ERVL 0 521 19 280 143 0 0 chr12 73800412 73800454 -69986001 - MIR SINE MIR -104 158 117 605 212 0 48 chr12 73800454 73800619 -69985836 + MER104 DNA Tc2 6 162 -18 218 57 57 0 chr12 73800761 73800796 -69985659 + CT-rich Low_complexity Low_complexity 4 40 0 1936 240 68 23 chr12 73802582 73803099 -69983356 - MLT1F LTR MaLR -2 540 1 736 305 159 11 chr12 73803201 73803571 -69982884 - L2 LINE L2 -4 3309 2885 1991 130 9 43 chr12 73803989 73804336 -69982119 - MER1B DNA MER1_type -1 336 2 212 221 25 49 chr12 73804641 73804804 -69981651 + (TGGG)n Simple_repeat Simple_repeat 4 162 0 253 93 23 78 chr12 73804807 73804936 -69981519 + (TGGGGG)n Simple_repeat Simple_repeat 2 123 0 2365 166 105 18 chr12 73804997 73807519 -69978936 + SATR1 Satellite Satellite 1 2743 0 2048 180 98 9 chr12 73807548 73809163 -69977292 - SATR1 Satellite Satellite -51 1759 1 21 36 0 0 chr12 73809734 73809762 -69976693 + AT_rich Low_complexity Low_complexity 1 28 0 392 292 57 42 chr12 73810004 73810196 -69976259 + MIR3 SINE MIR 42 236 -26 1248 286 117 46 chr12 73810861 73811486 -69974969 + MER115 DNA AcHobo 25 693 0 1920 163 7 3 chr12 73812679 73812974 -69973481 + AluSx SINE Alu 3 298 -14 212 330 43 26 chr12 73813173 73813288 -69973167 - MIR SINE MIR -72 190 74 4686 94 8 14 chr12 73813352 73814020 -69972435 + MER4A LTR ERV1 1 664 0 853 274 65 0 chr12 73814185 73814400 -69972055 + MIR SINE MIR 28 256 -6 257 311 84 17 chr12 73814409 73814528 -69971927 - MIR SINE MIR -64 198 72 2209 134 19 16 chr12 73814896 73815270 -69971185 + THE1C LTR MaLR 1 375 0 220 322 70 48 chr12 73815444 73815589 -69970866 - MIR SINE MIR -63 145 3 843 145 8 0 chr12 73817188 73817312 -69969143 + MER5A DNA MER1_type 2 126 -63 432 192 0 0 chr12 73817695 73817768 -69968687 + MER5A DNA MER1_type 117 189 0 458 293 63 6 chr12 73817783 73817957 -69968498 + MLT1J2 LTR MaLR 267 450 0 381 232 32 48 chr12 73818626 73818751 -69967704 + MLT1K LTR MaLR 438 560 -28 210 238 0 0 chr12 73821810 73821852 -69964603 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 790 272 83 10 chr12 73821952 73822264 -69964191 - L1MEc LINE L1 -6054 342 8 602 204 33 0 chr12 73822241 73822393 -69964062 - L1M4 LINE L1 -853 5362 5206 * 28 0 0 0 chr12 73824100 73824128 -69962327 + AT_rich Low_complexity Low_complexity 1 28 0 2005 68 4 50 chr12 73824218 73824497 -69961958 + AluY SINE Alu 40 305 -6 871 269 59 15 chr12 73825741 73825778 -69960677 + MER46C DNA MER2_type 1 35 -303 1665 147 0 98 chr12 73825778 73826124 -69960331 + AluJo SINE Alu 1 312 0 871 269 59 15 chr12 73826124 73826410 -69960045 + MER46C DNA MER2_type 35 338 0 230 322 0 0 chr12 73826874 73826933 -69959522 - 7SK RNA RNA -9 184 126 213 213 0 0 chr12 73827493 73827540 -69958915 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 459 253 103 61 chr12 73828414 73828675 -69957780 - MER102b DNA MER1_type 0 341 70 222 250 0 0 chr12 73829409 73829457 -69956998 + (TA)n Simple_repeat Simple_repeat 2 49 0 474 317 25 15 chr12 73829614 73829813 -69956642 + L2 LINE L2 2495 2695 -619 181 374 136 7 chr12 73829827 73829982 -69956473 + L2 LINE L2 2799 2973 -341 345 93 0 0 chr12 73830089 73830143 -69956312 + (T)n Simple_repeat Simple_repeat 1 54 0 297 258 0 65 chr12 73830494 73830649 -69955806 + C-rich Low_complexity Low_complexity 3 147 0 333 0 0 0 chr12 73831267 73831304 -69955151 + (T)n Simple_repeat Simple_repeat 1 37 0 2376 74 3 3 chr12 73831343 73831641 -69954814 + AluY SINE Alu 1 298 -13 326 238 25 25 chr12 73831647 73831727 -69954728 + L2 LINE L2 3219 3298 -15 1192 219 18 21 chr12 73831816 73832099 -69954356 - MLT1C LTR MaLR 0 467 186 284 345 10 35 chr12 73832109 73832309 -69954146 + L1M2a LINE L1 775 969 -6199 3542 192 29 61 chr12 73832314 73833184 -69953271 + L1MA9 LINE L1 5433 6274 -38 843 185 27 16 chr12 73833205 73833389 -69953066 - MLT1C LTR MaLR -281 186 1 1171 230 37 20 chr12 73833591 73833887 -69952568 - MLT1A2 LTR MaLR 0 374 74 239 200 0 0 chr12 73835099 73835149 -69951306 + L1MC4 LINE L1 6660 6709 -1333 1554 87 0 50 chr12 73836296 73836515 -69949940 - AluSx SINE Alu -104 208 1 340 372 79 42 chr12 73837128 73837531 -69948924 + L2 LINE L2 2838 3255 -17 4499 48 2 19 chr12 73838253 73838834 -69947621 + L1PA5 LINE L1 5584 6154 0 537 209 92 12 chr12 73839116 73839279 -69947176 - MIR SINE MIR 0 262 87 208 190 17 17 chr12 73840589 73840647 -69945808 + A-rich Low_complexity Low_complexity 6 63 0 196 235 12 118 chr12 73840853 73840938 -69945517 - L2 LINE L2 -34 3238 3163 * 379 238 42 84 chr12 73840919 73841062 -69945393 - MIR SINE MIR -113 149 13 214 310 169 21 chr12 73841730 73841872 -69944583 + MIR SINE MIR 37 199 -63 261 0 0 0 chr12 73843373 73843402 -69943053 + (TG)n Simple_repeat Simple_repeat 2 30 0 467 336 112 16 chr12 73844142 73844454 -69942001 - L3 LINE CR1 -115 1462 1121 406 287 40 88 chr12 73844548 73844799 -69941656 + MIR SINE MIR 10 248 -14 226 262 16 0 chr12 73844992 73845053 -69941402 + L2 LINE L2 3210 3271 -1 188 318 12 71 chr12 73845816 73845901 -69940554 + MIR SINE MIR 105 184 -78 14001 176 30 24 chr12 73846276 73846764 -69939691 - L1MA4 LINE L1 -299 6703 6219 781 191 8 0 chr12 73846764 73846895 -69939560 + FLAM_C SINE Alu 1 132 -1 14001 176 30 24 chr12 73846895 73850545 -69935910 - L1MA4 LINE L1 -783 6219 2531 1207 199 6 109 chr12 73850736 73851117 -69935338 + AluJo SINE Alu 3 302 0 237 355 64 0 chr12 73851228 73851338 -69935117 + L2 LINE L2 3182 3298 -15 401 311 56 31 chr12 73853068 73853229 -69933226 + MIR SINE MIR 50 214 -48 23 86 0 0 chr12 73853836 73853894 -69932561 + AT_rich Low_complexity Low_complexity 1 58 0 1096 135 110 0 chr12 73854415 73854615 -69931840 + L1MA9 LINE L1 6091 6312 0 231 307 40 13 chr12 73855196 73855271 -69931184 - L2 LINE L2 0 3272 3196 30 27 0 0 chr12 73855712 73855749 -69930706 + AT_rich Low_complexity Low_complexity 1 37 0 4606 127 4 27 chr12 73855801 73856567 -69929888 + L1PB3 LINE L1 5407 6154 0 24 0 0 0 chr12 73856572 73856596 -69929859 + AT_rich Low_complexity Low_complexity 1 24 0 205 183 100 67 chr12 73856685 73856745 -69929710 - L2 LINE L2 -23 3290 3229 1593 206 60 48 chr12 73915913 73916412 -69870043 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chr12 73917101 73917124 -69869331 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 288 84 40 chr12 73917359 73917585 -69868870 - MLT1J LTR MaLR -275 236 1 2572 184 71 2 chr12 73918429 73918933 -69867522 + MER21B LTR ERV1 1 539 -324 280 260 0 14 chr12 73918917 73918990 -69867465 + MER21B LTR ERV1 739 810 -53 * 193 388 20 10 chr12 73919115 73919213 -69867242 - MIR3 SINE MIR -12 196 98 371 279 81 97 chr12 73919637 73919939 -69866516 - L2 LINE L2 -207 3065 2767 207 360 158 14 chr12 73920177 73920455 -69866000 - L2 LINE L2 -447 2867 2550 25 0 0 0 chr12 73921277 73921302 -69865153 + AT_rich Low_complexity Low_complexity 1 25 0 309 286 128 27 chr12 73921343 73921515 -69864940 - MIR SINE MIR -63 145 7 275 301 27 0 chr12 73921749 73921822 -69864633 - L2 LINE L2 -8 3305 3231 2146 123 32 115 chr12 73923278 73923740 -69862715 + MSTB LTR MaLR 3 426 0 411 237 45 58 chr12 73924022 73924178 -69862277 + Charlie8 DNA MER1_type 67 220 -2197 627 247 60 6 chr12 73925277 73925459 -69860996 + MIR SINE MIR 41 232 -30 391 284 23 0 chr12 73925480 73925568 -69860887 - L2 LINE L2 -36 3277 3188 366 277 94 85 chr12 73925917 73926224 -69860231 + MLT1I LTR MaLR 100 409 0 249 386 38 8 chr12 73926386 73926518 -69859937 + MIR SINE MIR 19 154 -108 270 0 0 0 chr12 73927158 73927188 -69859267 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 203 88 29 0 chr12 73927189 73927223 -69859232 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 420 164 172 43 chr12 73927223 73927339 -69859116 - L2 LINE L2 -1 3312 3182 319 243 0 27 chr12 73927469 73927543 -69858912 + L2 LINE L2 3201 3272 0 644 170 126 7 chr12 73928277 73928412 -69858043 + MLT1A1 LTR MaLR 1 151 -214 2209 108 7 13 chr12 73928417 73928724 -69857731 + AluSx SINE Alu 1 305 -7 1076 176 0 0 chr12 73928724 73928900 -69857555 + AluSg/x SINE Alu 135 310 0 1105 213 5 5 chr12 73928908 73929129 -69857326 + MLT1A1 LTR MaLR 144 364 -1 1053 287 93 18 chr12 73929144 73929682 -69856773 - L2 LINE L2 -19 3294 2713 194 229 0 16 chr12 73930281 73930342 -69856113 + CT-rich Low_complexity Low_complexity 4 63 0 296 274 80 53 chr12 73930608 73930721 -69855734 - L2 LINE L2 -19 3253 3138 505 246 77 73 chr12 73931010 73931126 -69855329 + MIR SINE MIR 2 116 -146 2306 89 16 3 chr12 73931126 73931430 -69855025 - AluSg SINE Alu -2 308 1 505 246 77 73 chr12 73931430 73931573 -69854882 + MIR SINE MIR 116 262 0 257 363 50 0 chr12 73932129 73932209 -69854246 - L2 LINE L2 -15 3257 3174 185 0 40 0 chr12 73932879 73932904 -69853551 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 513 0 0 0 chr12 73933277 73933334 -69853121 + (TG)n Simple_repeat Simple_repeat 2 58 0 199 93 47 0 chr12 73933335 73933378 -69853077 + GA-rich Low_complexity Low_complexity 2 46 0 26 0 0 0 chr12 73933984 73934010 -69852445 + AT_rich Low_complexity Low_complexity 1 26 0 221 369 15 0 chr12 73934297 73934362 -69852093 + L2 LINE L2 3205 3270 -2 2352 65 0 10 chr12 73934479 73934769 -69851686 + AluY SINE Alu 1 287 -24 225 65 0 0 chr12 73934769 73934800 -69851655 + (CATA)n Simple_repeat Simple_repeat 2 32 0 326 300 22 0 chr12 73934804 73934894 -69851561 + L2 LINE L2 2842 2933 -381 2316 105 0 7 chr12 73934918 73935223 -69851232 + AluSg SINE Alu 1 303 -7 1776 205 45 51 chr12 73935387 73935804 -69850651 - MER31B LTR ERV1 -1 465 50 2384 78 0 13 chr12 73935804 73936113 -69850342 + AluY SINE Alu 1 305 -6 1776 205 45 51 chr12 73936113 73936163 -69850292 - MER31B LTR ERV1 -416 50 1 1935 145 54 0 chr12 73937102 73937398 -69849057 - AluSx SINE Alu 0 312 1 26 88 0 0 chr12 73937629 73937697 -69848758 + AT_rich Low_complexity Low_complexity 1 68 0 2168 102 0 72 chr12 73938172 73938504 -69847951 - AluSg SINE Alu -2 308 1 800 240 19 0 chr12 73938931 73939139 -69847316 - L1MC4 LINE L1 -152 7890 7679 25 0 0 0 chr12 73939633 73939658 -69846797 + AT_rich Low_complexity Low_complexity 1 25 0 229 204 108 65 chr12 73939752 73939938 -69846517 - Charlie7 DNA MER1_type -2 2610 2417 * 280 218 51 0 chr12 73939913 73939991 -69846464 - Charlie7 DNA MER1_type -2511 101 20 1725 227 38 42 chr12 73940970 73941699 -69844756 - L1MEc LINE L1 -4893 1322 622 394 240 58 0 chr12 73942253 73942357 -69844098 + MER58 DNA MER1_type 2306 2415 -5 1284 217 118 49 chr12 73942387 73942894 -69843561 - L1MEc LINE L1 -5796 600 59 441 268 59 46 chr12 73944590 73944795 -69841660 + MIR SINE MIR 41 251 -11 399 202 86 9 chr12 73946837 73946975 -69839480 + L1MA8 LINE L1 5986 6137 -154 336 280 105 58 chr12 73946988 73947374 -69839081 - MLT1J LTR MaLR -13 602 100 203 335 62 57 chr12 73947538 73947714 -69838741 - L2 LINE L2 -238 3034 2858 4833 123 189 23 chr12 73947816 73948849 -69837606 - MER11B LTR ERVK 0 1236 33 477 174 85 9 chr12 73948941 73949079 -69837376 + L1MA8 LINE L1 5986 6137 -154 355 265 127 82 chr12 73949092 73949470 -69836985 - MLT1J LTR MaLR -13 602 108 201 318 62 57 chr12 73949645 73949821 -69836634 - L2 LINE L2 -238 3034 2858 822 250 82 0 chr12 73950560 73950744 -69835711 + MIR SINE MIR 5 203 -59 231 243 29 0 chr12 73950747 73950817 -69835638 + L1ME LINE L1 5527 5598 -523 1152 183 3 88 chr12 73950820 73951104 -69835351 + AluJo SINE Alu 46 305 -7 189 107 0 0 chr12 73951105 73951133 -69835322 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 246 301 97 11 chr12 73951691 73951784 -69834671 + MIR SINE MIR 7 107 -155 1714 159 0 33 chr12 73951886 73952162 -69834293 - AluJb SINE Alu -45 267 1 351 0 0 0 chr12 73952257 73952296 -69834159 + (CA)n Simple_repeat Simple_repeat 2 40 0 361 205 13 0 chr12 73952296 73952374 -69834081 - MER96 DNA MER1_type? -2 173 95 257 250 138 0 chr12 73952411 73952491 -69833964 - MER96 DNA MER1_type? -78 97 7 264 309 0 12 chr12 73952503 73952584 -69833871 + (CA)n Simple_repeat Simple_repeat 2 81 0 241 307 60 53 chr12 73953700 73953850 -69832605 + MIR3 SINE MIR 19 169 -39 27 62 0 0 chr12 73954222 73954270 -69832185 + AT_rich Low_complexity Low_complexity 1 48 0 1896 195 23 101 chr12 73954599 73954659 -69831796 - MLT2B1 LTR ERVL 0 520 457 233 0 0 59 chr12 73954659 73954693 -69831762 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 1896 195 23 101 chr12 73954693 73955196 -69831259 - MLT2B1 LTR ERVL -63 457 1 21 57 0 0 chr12 73955384 73955419 -69831036 + AT_rich Low_complexity Low_complexity 1 35 0 476 227 56 91 chr12 73955483 73955522 -69830933 + MIR SINE MIR 72 111 -151 2297 110 0 0 chr12 73955522 73955823 -69830632 - AluSq SINE Alu -12 301 1 476 227 56 91 chr12 73955823 73955981 -69830474 + MIR SINE MIR 111 262 0 2784 298 89 35 chr12 73957472 73959186 -69827269 - L2 LINE L2 0 3313 1480 294 239 174 0 chr12 73959166 73959258 -69827197 + L2 LINE L2 3164 3271 -1 * 2058 108 36 0 chr12 73959411 73959688 -69826767 - AluSg SINE Alu -23 287 1 2306 116 0 0 chr12 73960212 73960522 -69825933 + AluSx SINE Alu 1 310 -2 201 311 8 76 chr12 73961143 73961275 -69825180 - L2 LINE L2 -209 3104 2982 8042 114 18 31 chr12 73962422 73963739 -69822716 - HSMAR2 DNA Mariner -1 1301 2 664 294 60 0 chr12 73964178 73964413 -69822042 - MIR SINE MIR -10 252 4 1508 253 146 100 chr12 73964772 73965563 -69820892 - L2 LINE L2 0 3313 2560 599 157 0 0 chr12 73965563 73965671 -69820784 - AluSg/x SINE Alu 0 312 205 1508 253 146 100 chr12 73965671 73966395 -69820060 - L2 LINE L2 -753 2560 1604 431 262 83 18 chr12 73966448 73966616 -69819839 - L1ME LINE L1 -374 5747 5569 689 24 0 0 chr12 73967164 73967249 -69819206 - L1PA4 LINE L1 -3 6152 6068 225 306 56 0 chr12 73968385 73968457 -69817998 - L2 LINE L2 -9 3304 3229 270 188 16 0 chr12 73971787 73971851 -69814604 + MER52A LTR ERV1 1 65 -1690 2838 185 65 146 chr12 73972070 73973342 -69813113 + MER52A LTR ERV1 46 511 -125 344 138 15 0 chr12 73973316 73973381 -69813074 + MER52A LTR ERV1 1684 1749 -6 * 281 284 126 60 chr12 73973388 73973571 -69812884 - MIR SINE MIR -67 195 1 4770 30 3 0 chr12 73973587 73974154 -69812301 - L1PA5 LINE L1 -2 6152 5584 242 319 60 18 chr12 73974981 73975147 -69811308 + L2 LINE L2 1884 2056 -1258 240 167 42 0 chr12 73975791 73975863 -69810592 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 2316 96 0 0 chr12 73976145 73976437 -69810018 + AluSc SINE Alu 1 292 -17 1024 283 126 15 chr12 73976712 73977242 -69809213 - L2 LINE L2 -1 3312 2712 2173 104 3 13 chr12 73977287 73977594 -69808861 + AluSq SINE Alu 1 304 -9 1066 226 70 70 chr12 73978053 73978513 -69807942 + HAL1b LINE L1 300 759 -589 640 251 85 38 chr12 73978548 73978759 -69807696 - MLT1J2 LTR MaLR -41 409 189 357 209 59 18 chr12 73978849 73979011 -69807444 + HAL1b LINE L1 756 2313 -194 356 229 69 127 chr12 73979145 73979564 -69806891 + L1ME4a LINE L1 5715 6109 -12 309 373 103 37 chr12 73979811 73980382 -69806073 - L2 LINE L2 -400 2914 2306 188 174 0 109 chr12 73981690 73981736 -69804719 + L2 LINE L2 3261 3301 -12 1724 180 14 60 chr12 73983135 73983551 -69802904 + MLT1C LTR MaLR 23 419 -48 21 71 0 0 chr12 73983551 73983593 -69802862 + AT_rich Low_complexity Low_complexity 1 42 0 2196 147 40 8 chr12 73984879 73985253 -69801202 - L1PA16 LINE L1 -11 6155 5770 42161 40 2 1 chr12 73985271 73991414 -69795041 - L1PA3 LINE L1 -4 6151 2 740 276 51 0 chr12 73991853 73992049 -69794406 + MER58A DNA MER1_type 16 221 -3 2160 92 3 14 chr12 73993012 73993306 -69793149 + AluSq SINE Alu 10 300 -13 276 244 26 9 chr12 73993331 73993446 -69793009 + (TA)n Simple_repeat Simple_repeat 2 118 0 430 324 90 16 chr12 73993592 73993836 -69792619 + MIR SINE MIR 1 262 0 240 35 0 0 chr12 73994121 73994150 -69792305 + (TG)n Simple_repeat Simple_repeat 2 30 0 258 343 157 0 chr12 73995649 73995789 -69790666 - MIR3 SINE MIR -3 205 44 752 168 0 0 chr12 73995789 73995908 -69790547 - FLAM_C SINE Alu -9 134 16 407 219 37 0 chr12 73996025 73996107 -69790348 + AluSg/x SINE Alu 138 222 -88 183 222 0 0 chr12 73996129 73996165 -69790290 + MIR SINE MIR 83 118 -90 228 242 45 0 chr12 73996165 73996231 -69790224 + MIR SINE MIR 80 148 -114 204 358 77 77 chr12 73996365 73996714 -69789741 + L2 LINE L2 2611 2959 -355 1736 71 5 0 chr12 73996728 73996940 -69789515 - AluY SINE Alu -3 308 96 187 320 93 31 chr12 73997082 73997179 -69789276 + L2 LINE L2 3150 3252 -20 1649 172 0 4 chr12 73997200 73997462 -69788993 + AluJo SINE Alu 2 262 -50 198 0 0 0 chr12 73997480 73997502 -69788953 + (CAA)n Simple_repeat Simple_repeat 3 24 0 30 0 0 0 chr12 74001357 74001387 -69785068 + AT_rich Low_complexity Low_complexity 1 30 0 326 329 59 12 chr12 74004175 74004345 -69782110 - L2 LINE L2 0 3313 3136 1695 164 93 29 chr12 74004345 74004754 -69781701 + L1MC2 LINE L1 5902 6336 -8 557 295 49 54 chr12 74004929 74005299 -69781156 - L2 LINE L2 -570 2744 2377 1447 189 26 42 chr12 74005396 74005708 -69780747 + AluJo SINE Alu 1 307 -5 321 295 0 114 chr12 74007044 74007210 -69779245 - MIR SINE MIR -110 152 6 233 29 0 29 chr12 74007233 74007268 -69779187 + (TTG)n Simple_repeat Simple_repeat 2 35 0 586 184 68 133 chr12 74008275 74008509 -69777946 - MER20 DNA MER1_type 0 219 1 495 198 0 0 chr12 74009640 74009731 -69776724 + FRAM SINE Alu 74 164 -12 1590 143 143 0 chr12 74011174 74011432 -69775023 + AluSx SINE Alu 1 295 -17 491 279 54 7 chr12 74012217 74012364 -69774091 + MIR3 SINE MIR 32 185 -23 356 267 87 31 chr12 74012442 74012603 -69773852 + MER97a DNA MER1_type? 1 170 -724 242 333 219 24 chr12 74012896 74014017 -69772438 + L2 LINE L2 1536 2874 -440 182 333 78 50 chr12 74015214 74015355 -69771100 + L2 LINE L2 3128 3272 0 26 0 0 0 chr12 74015576 74015602 -69770853 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr12 74015832 74015857 -69770598 + AT_rich Low_complexity Low_complexity 1 25 0 1235 144 0 0 chr12 74015961 74016135 -69770320 + AluJb SINE Alu 133 306 -6 186 200 44 0 chr12 74016949 74016994 -69769461 + L2 LINE L2 3267 3313 0 215 316 20 51 chr12 74017072 74017170 -69769285 + MIR SINE MIR 47 141 -121 1773 148 11 18 chr12 74018689 74018966 -69767489 + AluJb SINE Alu 11 285 -27 441 0 0 0 chr12 74018966 74019015 -69767440 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 205 189 180 139 chr12 74019046 74019101 -69767354 - MIR3 SINE MIR -54 154 103 1299 243 21 49 chr12 74019101 74019567 -69766888 - LTR16A1 LTR ERVL -1 456 4 205 189 180 139 chr12 74019567 74019633 -69766822 - MIR3 SINE MIR -105 103 28 372 214 129 80 chr12 74019841 74020042 -69766413 - MIR SINE MIR -40 222 12 434 295 86 14 chr12 74020655 74020865 -69765590 - MIR SINE MIR -34 228 4 2785 85 0 6 chr12 74020904 74021267 -69765188 + THE1B LTR MaLR 1 361 -3 189 74 0 0 chr12 74021817 74021844 -69764611 + (TTTCC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr12 74022748 74022771 -69763684 + AT_rich Low_complexity Low_complexity 1 23 0 414 172 0 0 chr12 74023000 74023099 -69763356 + T-rich Low_complexity Low_complexity 1 99 0 244 224 0 0 chr12 74023507 74023556 -69762899 + L2 LINE L2 3257 3305 -8 2243 129 0 0 chr12 74023644 74023947 -69762508 + AluSg SINE Alu 2 304 -6 495 217 32 3 chr12 74025342 74025687 -69760768 + CT-rich Low_complexity Low_complexity 1 355 0 1435 204 38 4 chr12 74025687 74025951 -69760504 - AluJo SINE Alu -39 273 1 2234 110 0 7 chr12 74025964 74026273 -69760182 - AluSx SINE Alu -5 307 1 274 315 27 45 chr12 74026716 74026827 -69759628 + L2 LINE L2 3149 3257 -15 420 20 0 0 chr12 74027136 74027185 -69759270 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 294 18 6 chr12 74027200 74027370 -69759085 + (TA)n Simple_repeat Simple_repeat 1 172 0 902 196 0 6 chr12 74027792 74027955 -69758500 + MER46A DNA MER2_type 1 162 -74 228 121 155 0 chr12 74027937 74027995 -69758460 - LTR66 LTR ERVL -171 439 373 * 305 208 42 0 chr12 74027987 74028059 -69758396 - L1MCa LINE L1 -4354 2072 1998 570 36 0 173 chr12 74028067 74028177 -69758278 - Tigger4(Zombi) DNA MER2_type 0 2731 2641 1927 153 10 13 chr12 74029345 74029645 -69756810 + AluSx SINE Alu 1 299 -13 659 239 77 32 chr12 74029675 74029922 -69756533 - MIR SINE MIR -1 261 4 24 0 0 0 chr12 74031247 74031271 -69755184 + AT_rich Low_complexity Low_complexity 1 24 0 243 236 0 0 chr12 74031383 74031455 -69755000 + (TA)n Simple_repeat Simple_repeat 1 72 0 215 343 0 29 chr12 74031487 74031592 -69754863 + (CAG)n Simple_repeat Simple_repeat 2 103 0 909 204 58 22 chr12 74031745 74031970 -69754485 - MIR SINE MIR -22 240 8 1790 103 114 4 chr12 74035445 74035717 -69750738 + AluSx SINE Alu 1 302 -10 663 279 34 21 chr12 74035789 74036022 -69750433 - MIR SINE MIR -4 258 23 25 31 0 0 chr12 74036658 74036690 -69749765 + AT_rich Low_complexity Low_complexity 1 32 0 2182 112 3 3 chr12 74037663 74037958 -69748497 + AluSg SINE Alu 1 295 -15 1041 134 6 6 chr12 74039369 74039526 -69746929 - FRAM SINE Alu -19 157 1 353 266 13 0 chr12 74039670 74039749 -69746706 + Charlie7 DNA MER1_type 2 81 -2531 295 189 107 25 chr12 74039759 74039881 -69746574 + Charlie7 DNA MER1_type 2440 2571 -41 8282 66 3 10 chr12 74040095 74041173 -69745282 + MER11C LTR ERVK 2 1071 0 1816 156 3 3 chr12 74041234 74041522 -69744933 - AluJb SINE Alu -22 290 3 238 265 78 29 chr12 74041550 74041652 -69744803 + L1MC/D LINE L1 5649 5755 -2053 33 25 0 0 chr12 74041949 74041989 -69744466 + AT_rich Low_complexity Low_complexity 1 40 0 618 230 33 18 chr12 74042174 74042373 -69744082 - MLT2D LTR ERVL -236 178 1 4630 168 21 15 chr12 74042374 74043349 -69743106 + L1MB7 LINE L1 5180 6168 -16 867 78 16 8 chr12 74044599 74044727 -69741728 - L1PA13 LINE L1 -5 6158 6030 26 30 0 0 chr12 74044738 74044771 -69741684 + AT_rich Low_complexity Low_complexity 1 33 0 9200 131 15 39 chr12 74044776 74047267 -69739188 - L1PA13 LINE L1 -111 6052 3635 273 29 0 0 chr12 74047381 74047415 -69739040 + (TG)n Simple_repeat Simple_repeat 2 35 0 606 260 22 35 chr12 74048590 74048817 -69737638 + L1ME4a LINE L1 5657 5880 -241 21 71 0 0 chr12 74049254 74049296 -69737159 + AT_rich Low_complexity Low_complexity 1 42 0 1758 157 14 20 chr12 74051764 74052086 -69734369 - AluJo SINE Alu 0 312 3 1860 177 0 0 chr12 74054237 74054537 -69731918 - AluJb SINE Alu -12 300 1 399 356 158 16 chr12 74055505 74055828 -69730627 - L2 LINE L2 -603 2711 2343 251 353 0 0 chr12 74056130 74056215 -69730240 - MIR SINE MIR -66 142 58 942 199 0 0 chr12 74056617 74056773 -69729682 + FRAM SINE Alu 1 156 -10 1134 38 0 51 chr12 74057995 74058153 -69728302 + L1PA7 LINE L1 5997 6146 -8 3477 192 78 10 chr12 74058376 74059635 -69726820 + L1MB8 LINE L1 4834 6178 0 459 279 84 0 chr12 74059644 74059798 -69726657 - MER5A DNA MER1_type -21 168 2 186 43 0 0 chr12 74060465 74060488 -69725967 + (TC)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr12 74061116 74061150 -69725305 + AT_rich Low_complexity Low_complexity 1 34 0 2824 133 7 4 chr12 74061408 74061865 -69724590 - L1PA16 LINE L1 -6 6160 5703 21 0 0 0 chr12 74061966 74061987 -69724468 + AT_rich Low_complexity Low_complexity 1 21 0 396 347 114 5 chr12 74062097 74062316 -69724139 + MIR SINE MIR 14 256 -6 336 221 44 0 chr12 74062635 74062703 -69723752 + FLAM SINE Alu 63 133 0 1235 137 0 58 chr12 74062713 74062918 -69723537 + AluJb SINE Alu 84 276 -36 553 346 82 55 chr12 74063301 74063665 -69722790 - L2 LINE L2 -65 3207 2834 809 193 48 39 chr12 74063731 74063938 -69722517 - MER3 DNA MER1_type 0 209 1 553 210 32 16 chr12 74064031 74064155 -69722300 - MER103 DNA DNA -29 137 12 677 354 154 15 chr12 74064276 74065220 -69721235 - L2 LINE L2 -557 2757 1683 218 280 172 11 chr12 74065233 74065326 -69721129 - L2 LINE L2 -11 3261 3154 904 300 93 26 chr12 74065967 74066397 -69720058 - MLT1J LTR MaLR -39 472 14 5749 142 44 9 chr12 74066897 74068077 -69718378 - L1MA7 LINE L1 0 6291 5058 368 202 22 45 chr12 74068081 74068170 -69718285 - MER69A DNA AcHobo -44 133 47 28 48 0 0 chr12 74068883 74068925 -69717530 + AT_rich Low_complexity Low_complexity 1 42 0 597 266 58 15 chr12 74069005 74069208 -69717247 + MIR SINE MIR 38 247 -15 2061 217 126 10 chr12 74069278 74069785 -69716670 - MLT1F1 LTR MaLR 0 567 2 21 0 0 0 chr12 74069898 74069919 -69716536 + AT_rich Low_complexity Low_complexity 1 21 0 521 256 61 65 chr12 74070240 74070502 -69715953 + MIR SINE MIR 2 262 0 1550 178 21 35 chr12 74070542 74070864 -69715591 - AluJb SINE Alu 0 318 1 773 211 3 147 chr12 74072388 74072729 -69713726 - L2 LINE L2 -2 3311 3020 348 233 105 8 chr12 74073597 74073730 -69712725 + L1MEd LINE L1 17 162 -5957 719 289 104 44 chr12 74073762 74073885 -69712570 + L1MEd LINE L1 253 367 -5752 2883 0 0 0 chr12 74073885 74074193 -69712262 + AluY SINE Alu 1 308 -3 719 289 104 44 chr12 74074193 74074474 -69711981 + L1MEd LINE L1 367 681 -5438 1852 300 22 35 chr12 74074480 74075221 -69711234 + L1M2a LINE L1 411 1141 -6425 1442 243 8 8 chr12 74075683 74076045 -69710410 + L1M2a LINE L1 2154 2515 -5051 10370 174 56 24 chr12 74076079 74077246 -69709209 + L1M2a LINE L1 3293 4422 -3143 2009 125 0 33 chr12 74077246 74077551 -69708904 + AluSx SINE Alu 1 295 -17 10370 174 56 24 chr12 74077551 74077887 -69708568 + L1M2a LINE L1 4422 4746 -2819 2129 120 0 0 chr12 74077887 74078179 -69708276 + AluSx SINE Alu 1 292 -20 10370 174 56 24 chr12 74078179 74079501 -69706954 + L1M2a LINE L1 4746 6250 -1315 712 169 50 19 chr12 74079501 74079659 -69706796 + L1MA6 LINE L1 6136 6300 0 803 270 95 49 chr12 74079669 74080497 -69705958 + L1MEd LINE L1 674 1628 -862 542 205 98 0 chr12 74131649 74131771 -69654684 + MER94 DNA DNA 1 134 0 267 277 18 54 chr12 74131798 74131910 -69654545 - MIR SINE MIR 0 262 155 452 321 42 24 chr12 74132161 74132364 -69654091 - MIR SINE MIR -56 206 3 2314 93 0 17 chr12 74132778 74133080 -69653375 - AluSx SINE Alu -15 297 1 21 0 0 0 chr12 74134372 74134393 -69652062 + GC_rich Low_complexity Low_complexity 1 21 0 354 245 137 14 chr12 74134827 74134966 -69651489 + MSTA LTR MaLR 273 428 0 2019 132 7 16 chr12 74135030 74135340 -69651115 + THE1B LTR MaLR 56 362 -2 385 181 36 0 chr12 74135340 74135423 -69651032 - L1 LINE L1 -3096 3050 2965 485 223 20 29 chr12 74135550 74135664 -69650791 + MER5A DNA MER1_type 65 188 -1 324 253 84 21 chr12 74135676 74135771 -69650684 + MIR SINE MIR 22 122 -140 230 195 0 0 chr12 74135924 74135965 -69650490 - L2 LINE L2 -95 3177 3137 32 0 0 0 chr12 74136108 74136140 -69650315 + AT_rich Low_complexity Low_complexity 1 32 0 358 373 93 3 chr12 74136588 74136888 -69649567 - L2 LINE L2 -450 2864 2538 205 244 133 22 chr12 74136961 74137051 -69649404 - MIR3 SINE MIR -106 102 3 274 297 14 0 chr12 74137162 74137236 -69649219 + LTR33 LTR ERVL 444 518 -3 280 351 0 0 chr12 74137949 74138026 -69648429 + MIR SINE MIR 13 89 -173 2399 137 20 65 chr12 74138027 74138289 -69648166 + LTR23 LTR ERV1 2 237 -200 2124 171 82 34 chr12 74138289 74138729 -69647726 - LOR1b LTR ERV1 0 461 1 2399 137 20 65 chr12 74138729 74138912 -69647543 + LTR23 LTR ERV1 237 427 -10 2495 186 43 82 chr12 74140102 74140420 -69646035 + LTR49-int LTR ERV1 1557 1837 -4494 1981 114 0 0 chr12 74140420 74140691 -69645764 - AluSc SINE Alu -2 307 37 2495 186 43 82 chr12 74140691 74141043 -69645412 + LTR49-int LTR ERV1 1837 2201 -4130 4143 153 32 4 chr12 74141044 74141736 -69644719 + MER50 LTR ERV1 1 711 -23 1672 247 23 59 chr12 74141737 74142214 -69644241 + LTR49-int LTR ERV1 2199 2658 -3673 2678 148 52 3 chr12 74142232 74142965 -69643490 + L1P4 LINE L1 4917 5670 -496 4106 119 2 7 chr12 74142965 74143521 -69642934 - MER41A LTR ERV1 0 554 2 9649 111 39 11 chr12 74143522 74145723 -69640732 - MER41A-int LTR ERV1 -2 5944 2856 957 157 110 0 chr12 74145710 74145901 -69640554 - MER41A-int LTR ERV1 -3000 2946 2735 * 31392 111 14 64 chr12 74145902 74146892 -69639563 - L1PA7 LINE L1 -1 6153 5115 2330 92 3 16 chr12 74146892 74147207 -69639248 - AluY SINE Alu 0 311 1 31392 111 14 64 chr12 74147207 74147670 -69638785 - L1PA7 LINE L1 -1039 5115 4630 203 79 26 0 chr12 74147670 74147708 -69638747 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 31392 111 14 64 chr12 74147708 74152731 -69633724 - L1PA7 LINE L1 -1524 4630 12 1478 157 16 6 chr12 74152767 74153136 -69633319 - MER41A-int LTR ERV1 -3276 2670 2255 868 180 7 0 chr12 74153135 74153285 -69633170 - MER41A-int LTR ERV1 -4911 2626 2476 * 2395 144 17 36 chr12 74153289 74153850 -69632605 - MER41A-int LTR ERV1 -4383 2052 552 * 3946 145 35 10 chr12 74153845 74154473 -69631982 - MER41A-int LTR ERV1 -5302 644 1 317 130 338 13 chr12 74154482 74154559 -69631896 - MER41A-int LTR ERV1 -5844 102 1 3571 102 44 38 chr12 74154559 74154660 -69631795 - MER41A LTR ERV1 0 554 455 2009 110 4 14 chr12 74154660 74154849 -69631606 - AluSx SINE Alu 0 322 136 2136 123 0 10 chr12 74154849 74155150 -69631305 - AluSg SINE Alu -12 298 1 2009 110 4 14 chr12 74155150 74155280 -69631175 - AluSx SINE Alu -186 136 6 3571 102 44 38 chr12 74155280 74155727 -69630728 - MER41A LTR ERV1 -99 455 1 1330 156 30 10 chr12 74155727 74155925 -69630530 + L1PA16 LINE L1 5667 5860 -306 1330 109 5 16 chr12 74155925 74156117 -69630338 + L1PA16 LINE L1 5968 6157 -9 1330 156 30 10 chr12 74156117 74156156 -69630299 + L1PA16 LINE L1 5860 6157 -9 259 236 0 0 chr12 74156202 74156257 -69630198 + MER34C LTR ERV1 171 225 -360 12984 107 7 7 chr12 74156304 74156926 -69629529 - L1PA8A LINE L1 -28 6418 5798 2377 77 0 0 chr12 74156926 74157224 -69629231 - AluY SINE Alu -13 298 1 12984 107 7 7 chr12 74157224 74159278 -69627177 - L1PA8A LINE L1 -648 5798 3741 6073 129 14 31 chr12 74159288 74160272 -69626183 - L1PA8A LINE L1 -4908 967 1 432 286 76 18 chr12 74160282 74160453 -69626002 + MER34C LTR ERV1 262 442 -143 663 181 96 153 chr12 74160457 74160614 -69625841 + LTR23-int LTR ERV1 1230 1366 -3757 2086 132 6 19 chr12 74160614 74160925 -69625530 + AluSx SINE Alu 1 307 -5 663 181 96 153 chr12 74160925 74161049 -69625406 + LTR23-int LTR ERV1 1366 1495 -3628 1824 181 0 0 chr12 74161059 74161352 -69625103 + AluJb SINE Alu 1 293 -19 2138 91 45 0 chr12 74161353 74161640 -69624815 + AluY SINE Alu 1 300 -11 206 171 0 49 chr12 74161641 74161682 -69624773 + polypurine Low_complexity Low_complexity 1 39 0 1803 209 54 28 chr12 74161686 74162556 -69623899 + LTR23-int LTR ERV1 1486 2973 -1907 422 187 0 0 chr12 74162576 74162651 -69623804 + LTR23-int LTR ERV1 2558 2632 -2491 913 209 125 88 chr12 74163361 74163826 -69622629 + LTR8A LTR ERV1 246 727 0 2526 61 0 7 chr12 74164216 74164526 -69621929 + AluY SINE Alu 2 309 -2 1471 125 46 92 chr12 74164731 74165034 -69621421 + LTR23 LTR ERV1 4 292 -145 918 141 31 12 chr12 74165064 74165227 -69621228 + LTR23 LTR ERV1 272 437 0 218 255 8 31 chr12 74165227 74165315 -69621140 + MIR SINE MIR 86 171 -37 1411 167 296 47 chr12 74165322 74165598 -69620857 + LTR48 LTR ERV1 70 276 -511 2413 89 3 0 chr12 74165598 74165900 -69620555 + AluSx SINE Alu 3 305 -7 1411 167 296 47 chr12 74165900 74166198 -69620257 + LTR48 LTR ERV1 276 787 0 288 277 43 11 chr12 74166198 74166292 -69620163 + MIR SINE MIR 140 236 -26 1031 108 0 36 chr12 74166452 74166619 -69619836 - MER5A DNA MER1_type -20 169 9 287 303 152 52 chr12 74166627 74166721 -69619734 + MIR SINE MIR 9 92 -170 2281 100 0 0 chr12 74166721 74167012 -69619443 - AluY SINE Alu -20 291 1 287 303 152 52 chr12 74167012 74167148 -69619307 + MIR SINE MIR 92 262 0 264 30 0 0 chr12 74167280 74167313 -69619142 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1985 126 0 4 chr12 74167313 74167591 -69618864 - AluSc SINE Alu -32 277 1 333 149 195 0 chr12 74167594 74167681 -69618774 - L1PA13 LINE L1 -1 6164 6061 2433 126 0 37 chr12 74167724 74168074 -69618381 - MER1B DNA MER1_type 0 337 1 1255 147 160 136 chr12 74168840 74169295 -69617160 - MER31B LTR ERV1 0 466 1 531 179 0 0 chr12 74169899 74169977 -69616478 - AluJ/FLAM SINE Alu -228 84 7 185 0 0 39 chr12 74170084 74170110 -69616345 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 182 111 0 0 chr12 74170170 74170197 -69616258 + MIR3 SINE MIR 173 199 -9 2199 115 11 0 chr12 74173218 74173505 -69612950 + AluSx SINE Alu 1 290 -22 234 281 0 0 chr12 74174553 74174610 -69611845 + L2 LINE L2 3215 3271 -1 23 0 0 0 chr12 74176402 74176425 -69610030 + AT_rich Low_complexity Low_complexity 1 23 0 486 272 80 19 chr12 74176735 74176897 -69609558 - MIR3 SINE MIR -6 202 31 810 153 23 11 chr12 74177348 74177571 -69608884 + MLT1F1 LTR MaLR 305 567 0 2212 118 3 0 chr12 74177924 74178228 -69608227 - AluSx SINE Alu -3 309 5 1304 155 19 0 chr12 74178234 74178440 -69608015 - AluJo SINE Alu -20 292 83 212 262 0 0 chr12 74178840 74178882 -69607573 + polypyrimidine Low_complexity Low_complexity 1 42 0 1953 112 63 0 chr12 74178882 74179168 -69607287 - AluSq SINE Alu -9 304 1 1801 176 3 26 chr12 74179174 74179486 -69606969 - AluJb SINE Alu -7 305 1 291 236 0 0 chr12 74179885 74179957 -69606498 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 325 303 0 0 chr12 74179957 74180046 -69606409 + L1MC4 LINE L1 6615 6703 -1339 190 286 107 0 chr12 74180065 74180121 -69606334 + L2 LINE L2 3251 3312 -1 463 309 144 0 chr12 74180125 74180319 -69606136 - MIR SINE MIR -34 228 7 297 309 100 0 chr12 74180444 74180554 -69605901 + L2 LINE L2 3145 3265 -7 1574 196 3 20 chr12 74181254 74181555 -69604900 - AluJo SINE Alu -16 296 1 366 65 0 0 chr12 74183004 74183050 -69603405 - MADE1 DNA Mariner -1 79 34 397 129 0 0 chr12 74183066 74183128 -69603327 - MADE1 DNA Mariner -18 62 1 200 328 139 32 chr12 74183298 74183636 -69602819 - L2 LINE L2 -469 2845 2472 372 158 0 79 chr12 74183645 74183721 -69602734 + FLAM_A SINE Alu 64 133 0 439 181 21 43 chr12 74183790 74183884 -69602571 + AluJo SINE Alu 56 147 -165 269 281 227 18 chr12 74183965 74184243 -69602212 - L2 LINE L2 -936 2378 2043 275 258 0 0 chr12 74184744 74184806 -69601649 + L1MC5 LINE L1 7172 7233 -728 816 223 49 88 chr12 74184958 74185403 -69601052 + L1MC5 LINE L1 7315 7742 -219 216 260 19 10 chr12 74185430 74185534 -69600921 + (TA)n Simple_repeat Simple_repeat 2 106 0 234 170 0 38 chr12 74185558 74185611 -69600844 - L1MC4 LINE L1 -1346 6696 6646 * 381 205 45 120 chr12 74185606 74185806 -69600649 + L1MC5 LINE L1 7732 7916 -45 764 181 0 16 chr12 74185808 74185935 -69600520 - FLAM_C SINE Alu -17 126 2 21 0 0 0 chr12 74186102 74186123 -69600332 + AT_rich Low_complexity Low_complexity 1 21 0 326 282 129 12 chr12 74186568 74186738 -69599717 + MIR SINE MIR 61 250 -12 286 149 45 0 chr12 74187657 74187724 -69598731 + CT-rich Low_complexity Low_complexity 2 71 0 1435 163 39 50 chr12 74187724 74188006 -69598449 - AluJo SINE Alu -33 279 1 317 315 41 30 chr12 74188063 74188234 -69598221 - L1MC/D LINE L1 -495 5675 5552 1627 148 48 117 chr12 74188654 74189046 -69597409 + MLT1A1 LTR MaLR 1 365 0 225 0 0 0 chr12 74190291 74190316 -69596139 + (T)n Simple_repeat Simple_repeat 1 25 0 183 303 15 30 chr12 74190381 74190447 -69596008 + L3 LINE CR1 588 652 -925 196 214 82 71 chr12 74190549 74190647 -69595808 - MIR SINE MIR -5 257 159 306 174 35 174 chr12 74192008 74192073 -69594382 + MER5A DNA MER1_type 14 58 -131 2325 77 7 10 chr12 74192073 74192383 -69594072 + AluY SINE Alu 1 309 -2 306 174 35 174 chr12 74192383 74192432 -69594023 + MER5A DNA MER1_type 58 112 -77 480 301 22 7 chr12 74192642 74192778 -69593677 - MIR SINE MIR -94 168 31 321 222 183 46 chr12 74193374 74193527 -69592928 - MIR SINE MIR -66 196 23 336 284 156 0 chr12 74194209 74194350 -69592105 - MIR SINE MIR -51 211 49 5265 138 25 50 chr12 74196516 74197371 -69589084 - L1MB8 LINE L1 -1 6177 5302 2237 116 0 0 chr12 74197371 74197665 -69588790 + AluSg SINE Alu 1 294 -16 5265 138 25 50 chr12 74197665 74197680 -69588775 - L1MB8 LINE L1 -876 5302 5288 2449 68 10 3 chr12 74197680 74197989 -69588466 + AluY SINE Alu 1 311 0 5265 138 25 50 chr12 74197989 74198356 -69588099 - L1MB8 LINE L1 -890 5288 4981 749 280 11 0 chr12 74198886 74199068 -69587387 + MIR SINE MIR 79 262 0 325 286 17 25 chr12 74199174 74199293 -69587162 - L1ME4a LINE L1 -66 6055 5938 825 212 80 31 chr12 74199899 74200125 -69586330 - L2 LINE L2 -4 3309 3073 526 228 143 70 chr12 74200130 74200402 -69586053 - L2 LINE L2 -724 2590 2299 2339 97 0 0 chr12 74200929 74201227 -69585228 + AluSx SINE Alu 1 298 -14 247 335 82 29 chr12 74201372 74201578 -69584877 + L3 LINE CR1 892 1108 -469 666 258 73 79 chr12 74201614 74201970 -69584485 + L3 LINE CR1 1219 1572 -5 1793 158 62 0 chr12 74202548 74202840 -69583615 - AluJb SINE Alu -2 310 1 213 355 65 8 chr12 74202913 74203037 -69583418 - MIR3 SINE MIR -64 144 14 1885 150 0 4 chr12 74203078 74203352 -69583103 + AluSx SINE Alu 1 273 -39 261 0 0 0 chr12 74203352 74203381 -69583074 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr12 74203380 74203417 -69583038 + (CA)n Simple_repeat Simple_repeat 1 37 0 211 378 118 0 chr12 74203442 74203561 -69582894 + MIR SINE MIR 21 153 -55 260 304 137 48 chr12 74204277 74204445 -69582010 - MIR3 SINE MIR -7 201 19 200 188 0 0 chr12 74205031 74205063 -69581392 + L2 LINE L2 3133 3164 -108 208 342 55 38 chr12 74205291 74205528 -69580927 - L2 LINE L2 -357 2957 2717 287 287 109 0 chr12 74205583 74205684 -69580771 - MIR SINE MIR -123 139 28 2348 111 0 0 chr12 74205922 74206228 -69580227 - AluSx SINE Alu -6 306 1 2424 93 0 0 chr12 74207233 74207535 -69578920 + AluSx SINE Alu 1 302 -10 399 226 0 0 chr12 74209854 74209938 -69576517 + MIR SINE MIR 179 262 0 475 206 156 28 chr12 74211277 74211418 -69575037 + L1MCa LINE L1 170 328 -6098 * 2802 125 69 11 chr12 74211404 74211925 -69574530 + L1MCa LINE L1 1062 1612 -4814 200 268 0 54 chr12 74211925 74211981 -69574474 - L2 LINE L2 -33 3239 3187 367 255 21 0 chr12 74212314 74212408 -69574047 + MLT1J LTR MaLR 416 511 0 228 35 0 0 chr12 74212418 74212447 -69574008 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 265 348 14 28 chr12 74212450 74212591 -69573864 - L3 LINE CR1 -379 1198 1060 217 222 0 56 chr12 74213255 74213327 -69573128 - L3 LINE CR1 -614 963 896 502 346 97 36 chr12 74213655 74214186 -69572269 + L2 LINE L2 2613 3178 -94 2111 117 9 22 chr12 74214852 74215168 -69571287 - AluSq SINE Alu -1 312 1 393 238 0 2 chr12 74215432 74215520 -69570935 - MIR SINE MIR -63 145 69 316 260 199 43 chr12 74216719 74217000 -69569455 + L2 LINE L2 2983 3307 -6 1751 139 0 48 chr12 74217021 74217315 -69569140 + AluJo SINE Alu 1 280 -32 1219 290 73 63 chr12 74218439 74219263 -69567192 + L2 LINE L2 2022 2837 -476 2190 111 3 26 chr12 74219263 74219570 -69566885 + AluSx SINE Alu 1 300 -12 1219 290 73 63 chr12 74219570 74219583 -69566872 + L2 LINE L2 2837 2848 -465 1791 171 0 3 chr12 74219583 74219915 -69566540 + AluJb SINE Alu 1 331 0 1219 290 73 63 chr12 74219915 74220153 -69566302 + L2 LINE L2 2848 3309 -4 240 381 86 43 chr12 74220409 74220687 -69565768 + L2 LINE L2 2919 3208 -64 2678 161 60 19 chr12 74220756 74221239 -69565216 + MLT1D LTR MaLR 1 503 -2 485 314 190 42 chr12 74222235 74222857 -69563598 + L2 LINE L2 2136 2849 -465 872 152 8 0 chr12 74222882 74223014 -69563441 - FLAM_C SINE Alu -10 133 1 355 284 161 56 chr12 74223043 74223328 -69563127 + L2 LINE L2 2896 3210 -62 2397 82 3 0 chr12 74223329 74223621 -69562834 - AluY SINE Alu -18 293 1 262 382 8 8 chr12 74223788 74223919 -69562536 + MIR SINE MIR 10 140 -122 258 32 0 0 chr12 74224113 74224144 -69562311 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1911 145 0 7 chr12 74224146 74224428 -69562027 - AluJb SINE Alu -32 280 1 22 0 0 0 chr12 74224434 74224456 -69561999 + AT_rich Low_complexity Low_complexity 1 22 0 596 286 12 79 chr12 74225206 74225358 -69561097 + MIR SINE MIR 37 169 -93 1623 148 4 22 chr12 74225358 74225636 -69560819 - AluJb SINE Alu -3 309 37 596 286 12 79 chr12 74225636 74225724 -69560731 + MIR SINE MIR 169 261 -1 516 231 53 83 chr12 74227449 74227510 -69558945 + L1ME LINE L1 5277 5338 -828 2152 133 0 19 chr12 74227510 74227827 -69558628 + AluSx SINE Alu 1 311 -1 516 231 53 83 chr12 74227827 74228018 -69558437 + L1ME LINE L1 5338 5520 -646 209 161 0 0 chr12 74228024 74228055 -69558400 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr12 74228058 74228086 -69558369 + AT_rich Low_complexity Low_complexity 1 28 0 2093 100 4 4 chr12 74228520 74228800 -69557655 - AluSg SINE Alu -1 309 30 302 382 44 0 chr12 74230210 74230346 -69556109 + MIR3 SINE MIR 56 197 -11 258 263 0 0 chr12 74230554 74230611 -69555844 - L2 LINE L2 -2 3270 3214 669 237 18 92 chr12 74230930 74231188 -69555267 + MIR SINE MIR 5 250 -12 229 167 0 0 chr12 74232388 74232424 -69554031 - L2 LINE L2 -13 3259 3224 198 271 42 0 chr12 74232668 74232716 -69553739 + L3 LINE CR1 1505 1554 -23 266 155 35 0 chr12 74232904 74232962 -69553493 + CT-rich Low_complexity Low_complexity 2 61 0 215 70 0 47 chr12 74233648 74233691 -69552764 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 730 157 85 7 chr12 74233811 74233964 -69552491 + MLT1J2 LTR MaLR 1 165 -285 326 234 16 0 chr12 74234288 74234352 -69552103 - MIR3 SINE MIR -129 79 15 2394 89 0 0 chr12 74234442 74234744 -69551711 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr12 74234995 74235018 -69551437 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 74235093 74235124 -69551331 + AT_rich Low_complexity Low_complexity 1 31 0 2361 70 7 0 chr12 74235562 74235860 -69550595 + AluSp SINE Alu 1 300 -13 39 0 0 0 chr12 74236823 74236862 -69549593 + AT_rich Low_complexity Low_complexity 1 39 0 476 363 30 8 chr12 74236863 74237100 -69549355 - MIR SINE MIR -1 261 20 1693 210 73 10 chr12 74237349 74237845 -69548610 + L1ME LINE L1 4637 5163 -983 1259 200 6 60 chr12 74237871 74238221 -69548234 + L1ME LINE L1 5297 5627 -539 982 284 111 56 chr12 74238270 74239825 -69546630 + L1MEd LINE L1 2 1673 -4637 2022 150 3 0 chr12 74239983 74240283 -69546172 - AluSg SINE Alu -9 301 1 462 214 89 9 chr12 74240297 74240409 -69546046 + L2 LINE L2 1379 1499 -1815 1845 101 62 93 chr12 74240412 74240662 -69545793 + THE1C LTR MaLR 1 257 -118 180 0 0 0 chr12 74240662 74240682 -69545773 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 5481 60 0 1 chr12 74240682 74241371 -69545084 - L1PA5 LINE L1 -11 6143 5456 1845 101 62 93 chr12 74241371 74241506 -69544949 + THE1C LTR MaLR 255 375 0 1216 186 21 25 chr12 74241531 74241811 -69544644 + L2 LINE L2 1522 1800 -1514 273 248 20 0 chr12 74241823 74241924 -69544531 + L1MEd LINE L1 3075 3177 -2952 2062 139 20 0 chr12 74242860 74243161 -69543294 + AluSx SINE Alu 1 307 -5 2282 123 3 0 chr12 74243393 74243703 -69542752 + AluSq SINE Alu 1 311 -2 2002 147 0 28 chr12 74243712 74244032 -69542423 + AluSx SINE Alu 1 311 -1 240 270 111 48 chr12 74244443 74244569 -69541886 + MIR SINE MIR 1 134 -128 221 322 38 94 chr12 74245645 74245912 -69540543 + L2 LINE L2 2726 2977 -337 1761 152 47 20 chr12 74245981 74246277 -69540178 - AluJo SINE Alu -8 304 1 815 268 72 4 chr12 74246361 74246596 -69539859 + MIR SINE MIR 12 262 0 868 215 28 23 chr12 74246669 74246883 -69539572 - MER58C DNA MER1_type 0 215 1 386 319 36 27 chr12 74247808 74247994 -69538461 + MIR3 SINE MIR 5 193 -15 2422 105 0 0 chr12 74248272 74248585 -69537870 + AluSq SINE Alu 1 313 0 418 252 135 0 chr12 74248884 74248995 -69537460 + L2 LINE L2 3187 3312 -1 3077 40 0 3 chr12 74250119 74250489 -69535966 + L1PA7 LINE L1 5772 6140 -14 215 318 131 9 chr12 74250802 74250909 -69535546 - MIR3 SINE MIR -24 184 65 870 269 43 23 chr12 74251939 74252196 -69534259 + MIR SINE MIR 1 262 0 549 333 69 0 chr12 74252240 74252414 -69534041 + MIR SINE MIR 2 187 -75 21 0 0 0 chr12 74252600 74252621 -69533834 + AT_rich Low_complexity Low_complexity 1 21 0 204 204 37 0 chr12 74253025 74253079 -69533376 + (TA)n Simple_repeat Simple_repeat 2 57 0 885 233 0 0 chr12 74253657 74253816 -69532639 + FAM SINE Alu 1 159 -16 192 331 155 7 chr12 74254073 74254215 -69532240 - MIR3 SINE MIR -27 181 19 1871 146 7 17 chr12 74254537 74254695 -69531760 - AluJb SINE Alu -21 291 136 2375 96 0 0 chr12 74254695 74254998 -69531457 - AluSg SINE Alu -7 303 1 1871 146 7 17 chr12 74254998 74255133 -69531322 - AluJb SINE Alu -176 136 1 2285 77 3 43 chr12 74255604 74255927 -69530528 - AluY SINE Alu -1 310 1 730 209 91 13 chr12 74256366 74256596 -69529859 + L1MC5 LINE L1 7642 7889 -72 290 343 35 28 chr12 74257345 74257488 -69528967 + MIR SINE MIR 12 155 -107 * 632 284 125 0 chr12 74257480 74257712 -69528743 - MIR SINE MIR 0 262 2 1462 164 0 13 chr12 74257861 74258099 -69528356 + AluJb SINE Alu 72 306 -6 328 310 39 39 chr12 74258244 74258399 -69528056 - MER5A DNA MER1_type 0 189 35 1970 159 45 13 chr12 74258451 74258829 -69527626 + MLT1B LTR MaLR 1 390 0 220 268 24 12 chr12 74259171 74259253 -69527202 + (TCCA)n Simple_repeat Simple_repeat 3 85 0 214 388 15 0 chr12 74259254 74259321 -69527134 - L2 LINE L2 0 3313 3246 426 331 141 26 chr12 74259383 74259688 -69526767 - MER102b DNA MER1_type -1 340 1 24 53 0 0 chr12 74260655 74260693 -69525762 + AT_rich Low_complexity Low_complexity 1 38 0 1936 109 35 51 chr12 74261370 74261683 -69524772 - AluSg SINE Alu -2 308 1 213 253 13 27 chr12 74262127 74262202 -69524253 + MIR SINE MIR 168 241 -21 261 196 20 0 chr12 74262219 74262270 -69524185 - MIR3 SINE MIR -52 156 105 309 259 89 154 chr12 74263754 74264259 -69522196 + L1M2 LINE L1 587 1058 -5791 2029 119 0 37 chr12 74265114 74265430 -69521025 - AluSx SINE Alu 0 305 1 1886 162 0 3 chr12 74266536 74266826 -69519629 + AluJb SINE Alu 1 289 -23 241 306 0 0 chr12 74267169 74267231 -69519224 - L2 LINE L2 -5 3267 3206 284 360 130 23 chr12 74267264 74267611 -69518844 + L2 LINE L2 2922 3305 -8 325 228 34 67 chr12 74267738 74267887 -69518568 + GA-rich Low_complexity Low_complexity 3 146 0 656 225 66 53 chr12 74267902 74268053 -69518402 + MER5A DNA MER1_type 1 153 -36 26 0 0 0 chr12 74268163 74268189 -69518266 + AT_rich Low_complexity Low_complexity 1 26 0 491 114 0 0 chr12 74268329 74268408 -69518047 + AluS SINE Alu 232 310 -2 273 222 93 19 chr12 74268825 74268933 -69517522 + MIR SINE MIR 137 252 -10 328 232 65 77 chr12 74269761 74269929 -69516526 - L1MC4a LINE L1 -109 7699 7534 886 137 0 22 chr12 74269936 74270075 -69516380 - FLAM_C SINE Alu -7 136 1 464 250 20 26 chr12 74270077 74270229 -69516226 - L1MC4 LINE L1 -418 7624 7474 455 270 28 39 chr12 74270299 74270477 -69515978 - MER5B DNA MER1_type 0 178 3 1169 225 13 4 chr12 74270692 74270928 -69515527 + MER8 DNA MER2_type 1 238 -1 1798 160 0 34 chr12 74271919 74272241 -69514214 - AluJb SINE Alu 0 312 1 286 259 0 0 chr12 74272408 74272466 -69513989 - MER5A DNA MER1_type -80 109 52 246 277 0 48 chr12 74272856 74272939 -69513516 - MIR SINE MIR -6 256 178 378 0 0 0 chr12 74273230 74273272 -69513183 + (TG)n Simple_repeat Simple_repeat 2 43 0 226 333 95 0 chr12 74273279 74273363 -69513092 + MIR SINE MIR 59 150 -112 414 134 0 0 chr12 74273366 74273433 -69513022 + (ATG)n Simple_repeat Simple_repeat 2 68 0 1056 238 42 30 chr12 74273435 74273790 -69512665 + MLT1H LTR MaLR 1 322 -220 1374 210 48 0 chr12 74274757 74275066 -69511389 + L1PB4 LINE L1 5799 6122 -34 500 313 7 7 chr12 74278265 74278412 -69508043 - MER5A DNA MER1_type 0 189 43 23 33 0 0 chr12 74279045 74279075 -69507380 + AT_rich Low_complexity Low_complexity 1 30 0 665 197 0 7 chr12 74279295 74279447 -69507008 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 1934 139 42 3 chr12 74279447 74279777 -69506678 - MER2 DNA MER2_type -1 343 1 731 197 87 45 chr12 74280353 74280617 -69505838 - ORSL DNA AcHobo 0 275 1 853 154 0 0 chr12 74281749 74281879 -69504576 - FLAM_C SINE Alu -3 130 1 11630 69 20 8 chr12 74282218 74283907 -69502548 + L1P LINE L1 2746 4454 -1692 537 254 54 39 chr12 74284393 74284598 -69501857 - MIR SINE MIR 0 262 55 623 340 37 3 chr12 74284820 74285120 -69501335 - MER93a LTR ERV1 -19 383 74 721 179 133 0 chr12 74285146 74285297 -69501158 + AluJb SINE Alu 142 312 0 1590 159 0 121 chr12 74285586 74285926 -69500529 + AluJb SINE Alu 2 300 -2 996 142 18 106 chr12 74285973 74286191 -69500264 - AluJo SINE Alu -113 199 1 894 306 91 65 chr12 74286560 74287266 -69499189 + L3 LINE CR1 634 1357 -220 1416 195 37 30 chr12 74288590 74288887 -69497568 + AluJb SINE Alu 1 299 -13 520 294 71 16 chr12 74289332 74289516 -69496939 - MIR SINE MIR -65 197 4 182 351 0 0 chr12 74289542 74289599 -69496856 - L2 LINE L2 -15 3257 3201 207 0 0 0 chr12 74293446 74293469 -69492986 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 227 280 65 43 chr12 74293636 74293729 -69492726 - L2 LINE L2 -1 3271 3177 241 341 91 11 chr12 74294279 74294367 -69492088 - MIR SINE MIR -98 110 16 1031 79 0 0 chr12 74294470 74294609 -69491846 + L1PA10 LINE L1 6030 6168 0 990 182 6 6 chr12 74295585 74295761 -69490694 - FRAM SINE Alu 0 176 1 254 220 20 0 chr12 74296080 74296130 -69490325 - L2 LINE L2 -16 3297 3247 342 251 135 55 chr12 74296162 74296325 -69490130 - MER5B DNA MER1_type -1 177 2 7128 53 0 0 chr12 74296464 74297700 -69488755 - L1PA6 LINE L1 0 6154 4917 1483 247 23 59 chr12 74297718 74298195 -69488260 - LTR49-int LTR ERV1 -3673 2658 2199 3818 153 32 4 chr12 74298201 74298888 -69487567 - MER50 LTR ERV1 -28 706 1 2224 192 40 79 chr12 74298889 74299241 -69487214 - LTR49-int LTR ERV1 -4130 2201 1886 1987 114 0 0 chr12 74299241 74299512 -69486943 + AluSc SINE Alu 37 307 -2 2224 192 40 79 chr12 74299512 74299830 -69486625 - LTR49-int LTR ERV1 -4445 1886 1557 2205 134 20 65 chr12 74301020 74301203 -69485252 - LTR23 LTR ERV1 -10 427 237 1945 166 82 34 chr12 74301203 74301643 -69484812 + LOR1b LTR ERV1 1 461 0 2205 134 20 65 chr12 74301643 74301905 -69484550 - LTR23 LTR ERV1 -200 237 2 288 351 0 0 chr12 74301906 74301983 -69484472 - MIR SINE MIR -173 89 13 258 278 14 0 chr12 74302697 74302769 -69483686 - LTR33 LTR ERVL -3 518 446 204 244 133 22 chr12 74302882 74302972 -69483483 + MIR3 SINE MIR 3 102 -106 352 378 94 3 chr12 74303047 74303346 -69483109 + L2 LINE L2 2538 2863 -451 31 0 0 0 chr12 74303795 74303826 -69482629 + AT_rich Low_complexity Low_complexity 1 31 0 230 313 133 8 chr12 74303882 74304010 -69482445 + L2 LINE L2 3034 3177 -95 329 306 74 0 chr12 74304163 74304270 -69482185 - MIR SINE MIR -140 122 8 494 223 20 29 chr12 74304270 74304384 -69482071 - MER5A DNA MER1_type -1 188 65 348 190 13 0 chr12 74304515 74304594 -69481861 + L1 LINE L1 2971 3050 -3096 1881 132 7 16 chr12 74304594 74304904 -69481551 - THE1B LTR MaLR -2 362 56 8806 213 20 7 chr12 74304927 74304969 -69481486 + L1P LINE L1 3058 3098 -3048 1823 158 137 18 chr12 74304969 74305350 -69481105 - MSTA LTR MaLR 0 428 3 8806 213 20 7 chr12 74305350 74307502 -69478953 + L1P LINE L1 3098 5279 -867 706 147 154 0 chr12 74307502 74307638 -69478817 - MSTA LTR MaLR 0 428 272 1882 128 54 30 chr12 74307638 74307973 -69478482 - MER61A LTR ERV1 0 343 1 4198 115 35 11 chr12 74307973 74308972 -69477483 - MER61A-int LTR ERV1 0 5217 4150 6770 56 3 1 chr12 74308972 74310486 -69475969 - L1PA5 LINE L1 0 6154 4637 * 17975 38 5 3 chr12 74310485 74312829 -69473626 + L1PA5 LINE L1 2282 4631 -1515 16691 95 31 10 chr12 74312829 74315521 -69470934 - MER61A-int LTR ERV1 -1062 4949 1320 2037 76 8 0 chr12 74315524 74315788 -69470667 + AluSp SINE Alu 1 266 -47 2585 186 63 45 chr12 74315861 74316555 -69469900 - MER61A-int LTR ERV1 -4510 707 1 1666 165 54 24 chr12 74316555 74316888 -69469567 - MER61A LTR ERV1 0 343 1 198 222 0 95 chr12 74316985 74317048 -69469407 - L3 LINE CR1 -214 1363 1307 2754 157 11 4 chr12 74317051 74317515 -69468940 + MLT1C LTR MaLR 1 467 0 223 170 21 0 chr12 74317591 74317638 -69468817 - MIR SINE MIR -79 183 136 584 201 6 83 chr12 74317652 74317821 -69468634 + MLT1D LTR MaLR 1 156 -349 4386 106 32 79 chr12 74317831 74317937 -69468518 + MER34-int LTR ERV1 5474 5583 -748 1789 162 3 34 chr12 74317937 74318258 -69468197 + AluJb SINE Alu 1 311 -1 4386 106 32 79 chr12 74318258 74318278 -69468177 + MER34-int LTR ERV1 5583 5602 -729 2175 148 58 58 chr12 74318278 74318764 -69467691 - LTR19A LTR ERV1 0 486 1 4386 106 32 79 chr12 74318764 74319513 -69466942 + MER34-int LTR ERV1 5602 6309 -22 240 178 41 41 chr12 74319538 74319611 -69466844 + MER34 LTR ERV1 1 73 -469 2060 185 21 29 chr12 74319639 74320115 -69466340 + LTR29 LTR ERV1 137 608 -14 887 160 63 52 chr12 74320124 74320347 -69466108 + MLT1D LTR MaLR 153 480 -135 2491 158 43 0 chr12 74320347 74320789 -69465666 + LOR1b LTR ERV1 1 461 0 1741 180 31 11 chr12 74320797 74321153 -69465302 + LOR1b-int LTR ERV1 9 371 -7749 2149 122 86 0 chr12 74321169 74321531 -69464924 + LTR29-int LTR ERV1 203 595 -7525 9334 104 30 22 chr12 74321537 74323125 -69463330 + LOR1b-int LTR ERV1 3586 5186 -2934 1898 143 148 13 chr12 74323125 74323502 -69462953 - MSTA LTR MaLR 0 428 1 2300 120 0 88 chr12 74323509 74323942 -69462513 - MSTA-int LTR MaLR -8 1643 1249 1873 99 62 6 chr12 74323942 74323986 -69462469 + LOR1b-int LTR ERV1 5182 5222 -2898 180 0 0 0 chr12 74323986 74324006 -69462449 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1873 99 62 6 chr12 74324006 74324019 -69462436 + LOR1b-int LTR ERV1 5222 5233 -2887 2416 100 0 0 chr12 74324019 74324329 -69462126 + AluY SINE Alu 1 310 -1 1873 99 62 6 chr12 74324329 74324593 -69461862 + LOR1b-int LTR ERV1 5233 5522 -2598 1483 90 9 5 chr12 74324585 74324808 -69461647 + LOR1b-int LTR ERV1 5801 6024 -2096 * 624 121 0 0 chr12 74324812 74324903 -69461552 + LOR1b-int LTR ERV1 8030 8120 0 2347 166 33 11 chr12 74324903 74325354 -69461101 + LOR1b LTR ERV1 1 461 0 823 117 8 0 chr12 74325354 74325482 -69460973 + MLT1D LTR MaLR 377 505 0 541 293 7 14 chr12 74325482 74325622 -69460833 - MIR SINE MIR -117 145 7 486 224 88 20 chr12 74325627 74325774 -69460681 - L3 LINE CR1 -277 1300 1144 240 100 0 0 chr12 74326425 74326465 -69459990 + L1PA11 LINE L1 6134 6173 -1 22 0 0 0 chr12 74326533 74326555 -69459900 + AT_rich Low_complexity Low_complexity 1 22 0 1575 228 0 7 chr12 74326626 74326950 -69459505 - AluJb SINE Alu 0 312 1 1836 161 3 34 chr12 74326978 74327300 -69459155 - AluJo SINE Alu 0 312 1 1570 226 16 0 chr12 74327308 74327675 -69458780 - MER63B DNA MER1_type -60 376 4 10026 92 2 1 chr12 74328098 74330394 -69456061 + L1PA8 LINE L1 3880 6178 0 2497 71 0 0 chr12 74330586 74330896 -69455559 - AluY SINE Alu -1 310 1 1844 168 3 7 chr12 74331209 74331507 -69454948 - AluSx SINE Alu -15 297 1 233 230 0 81 chr12 74331525 74331599 -69454856 - MIR SINE MIR -4 258 191 602 178 72 16 chr12 74331749 74331909 -69454546 - MER110 LTR ERV1 0 468 327 2239 123 0 0 chr12 74331912 74332222 -69454233 - AluSx SINE Alu 0 312 3 346 327 68 64 chr12 74332308 74332528 -69453927 - MER89-int LTR ERV1 -2828 1819 1599 1613 180 35 0 chr12 74332751 74333012 -69453443 + AluJb SINE Alu 22 291 -21 2304 130 163 0 chr12 74333113 74333481 -69452974 - MSTA LTR MaLR 0 428 1 6606 188 36 17 chr12 74333481 74334736 -69451719 - MSTA-int LTR MaLR 0 1651 373 473 310 75 71 chr12 74335970 74336770 -69449685 + HERVK14C LTR ERVK 1068 1870 -4967 1166 268 63 51 chr12 74337231 74337803 -69448652 + HERVK14C LTR ERVK 2652 3093 -2852 253 243 14 0 chr12 74338017 74338087 -69448368 + HERVK14C LTR ERVK 3136 3206 -2710 448 273 55 41 chr12 74339160 74339546 -69446909 + HERVK14C LTR ERVK 4830 5218 -2025 2607 103 8 5 chr12 74339945 74340324 -69446131 - MSTA-int LTR MaLR -1198 382 3 2350 131 129 8 chr12 74340326 74340707 -69445748 - MSTA LTR MaLR 0 428 2 291 335 57 41 chr12 74340708 74340902 -69445553 - MER89-int LTR ERV1 -3204 3597 3401 729 157 17 0 chr12 74340940 74341055 -69445400 + U4 snRNA snRNA 23 139 -6 527 334 43 31 chr12 74341108 74341490 -69444965 - MER89-int LTR ERV1 -3452 3349 829 797 183 37 37 chr12 74341524 74341688 -69444767 - FAM SINE Alu -3 46 1 535 298 111 60 chr12 74342002 74342270 -69444185 - MER89-int LTR ERV1 -4197 450 158 2396 85 0 13 chr12 74342270 74342587 -69443868 - AluSp SINE Alu 0 313 1 535 298 111 60 chr12 74342587 74342670 -69443785 - MER89-int LTR ERV1 -4489 158 81 635 206 16 98 chr12 74342737 74342931 -69443524 + MER34B LTR ERV1 7 184 -381 417 231 174 40 chr12 74342917 74343164 -69443291 + MER34B LTR ERV1 286 565 0 * 2543 68 0 0 chr12 74343528 74343836 -69442619 + AluY SINE Alu 1 308 -3 2204 97 10 0 chr12 74344054 74344352 -69442103 - AluSp SINE Alu -10 303 3 497 148 16 107 chr12 74344821 74344943 -69441512 + MLT1F1 LTR MaLR 443 553 -14 211 296 84 66 chr12 74345479 74345814 -69440641 - L2 LINE L2 -57 3256 2916 387 169 0 0 chr12 74347766 74347837 -69438618 + (CAT)n Simple_repeat Simple_repeat 1 71 0 662 267 74 25 chr12 74347842 74348044 -69438411 - MIR SINE MIR -30 232 21 210 182 55 0 chr12 74348458 74348513 -69437942 + (TTAAA)n Simple_repeat Simple_repeat 5 62 0 205 180 33 16 chr12 74348873 74348934 -69437521 + (TAA)n Simple_repeat Simple_repeat 2 63 0 231 184 51 82 chr12 74348955 74349053 -69437402 + MLT1J LTR MaLR 404 498 -13 1815 202 42 24 chr12 74349075 74349457 -69436998 + MLT1B LTR MaLR 1 389 -1 1939 137 34 3 chr12 74349852 74350145 -69436310 + AluSx SINE Alu 1 302 -10 1538 185 82 20 chr12 74350499 74350851 -69435604 - LTR52 LTR ERVL -47 374 1 725 260 151 33 chr12 74351181 74351594 -69434861 + MLT1J LTR MaLR 24 425 -21 1105 168 0 22 chr12 74352263 74352442 -69434013 + FAM SINE Alu 1 175 0 2185 90 7 3 chr12 74352529 74352819 -69433636 + AluY SINE Alu 21 311 0 2506 65 0 3 chr12 74355146 74355453 -69431002 - AluY SINE Alu -5 306 1 373 131 38 38 chr12 74356471 74356544 -69429911 + L1MB3 LINE L1 6069 6145 -36 1602 132 99 7 chr12 74356544 74356816 -69429639 + AluJo SINE Alu 1 297 -15 373 131 38 38 chr12 74356816 74356830 -69429625 + L1MB3 LINE L1 6144 6157 -24 402 279 123 29 chr12 74358009 74358213 -69428242 - MIR SINE MIR 0 262 40 399 280 27 47 chr12 74358271 74358421 -69428034 + MER5A DNA MER1_type 43 189 0 2442 81 0 3 chr12 74358518 74358825 -69427630 - AluSg SINE Alu -4 306 1 870 141 0 8 chr12 74358853 74358981 -69427474 - FLAM_C SINE Alu -16 127 1 2356 92 0 7 chr12 74359377 74359683 -69426772 - AluY SINE Alu -7 304 1 2132 128 0 0 chr12 74360073 74360370 -69426085 - AluSq SINE Alu -16 297 1 619 53 0 0 chr12 74360379 74360455 -69426000 - Alu SINE Alu -12 297 222 233 256 0 70 chr12 74360523 74360609 -69425846 + MER34B LTR ERV1 36 115 -450 357 229 62 64 chr12 74360722 74360968 -69425487 + MER34 LTR ERV1 394 534 -8 1695 163 16 35 chr12 74361063 74361376 -69425079 + AluJo SINE Alu 1 307 -5 2308 81 0 0 chr12 74362957 74363263 -69423192 + AluY SINE Alu 1 306 0 1515 150 112 24 chr12 74363343 74363630 -69422825 - AluJo SINE Alu 0 312 1 1729 81 42 11 chr12 74363759 74364019 -69422436 - AluY SINE Alu -42 269 2 2066 181 115 40 chr12 74364111 74364581 -69421874 - MLT1D LTR MaLR 0 505 1 186 200 47 118 chr12 74366929 74367014 -69419441 + L2 LINE L2 3188 3266 -6 221 299 192 34 chr12 74367517 74367694 -69418761 - L3b LINE CR1 -96 1487 1283 21 0 0 0 chr12 74367904 74367925 -69418530 + AT_rich Low_complexity Low_complexity 1 21 0 651 276 70 0 chr12 74368481 74368680 -69417775 + MLT1I LTR MaLR 197 409 0 280 273 86 39 chr12 74368872 74369000 -69417455 + L2 LINE L2 3169 3302 -11 234 178 0 0 chr12 74369390 74369435 -69417020 + L1MB5 LINE L1 6084 6128 -46 829 267 49 9 chr12 74369517 74369742 -69416713 + MIR SINE MIR 28 261 -1 1084 265 55 57 chr12 74369752 74370227 -69416228 + L3 LINE CR1 588 1061 -516 239 313 226 0 chr12 74370307 74370422 -69416033 + MIR SINE MIR 25 165 -97 741 218 9 62 chr12 74370472 74370551 -69415904 - L1MB4 LINE L1 -55 6125 6043 2406 87 0 0 chr12 74370551 74370840 -69415615 - AluSg SINE Alu -21 289 1 741 218 9 62 chr12 74370840 74370971 -69415484 - L1MB4 LINE L1 -137 6043 5926 191 380 77 20 chr12 74370973 74371168 -69415287 + L3 LINE CR1 1371 1576 -1 226 226 53 60 chr12 74371208 74371338 -69415117 - MIR SINE MIR -62 146 23 23 33 0 0 chr12 74372187 74372217 -69414238 + AT_rich Low_complexity Low_complexity 1 30 0 429 305 51 68 chr12 74372565 74372916 -69413539 + L2 LINE L2 2390 2734 -580 804 199 15 0 chr12 74372999 74373130 -69413325 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr12 74373329 74373361 -69413094 + AT_rich Low_complexity Low_complexity 1 32 0 379 262 0 37 chr12 74373626 74373733 -69412722 - MIR3 SINE MIR 0 208 106 395 353 45 13 chr12 74374180 74374336 -69412119 - MIR SINE MIR -84 178 18 311 222 49 12 chr12 74374570 74374651 -69411804 - MIR SINE MIR -108 154 71 515 323 156 28 chr12 74374812 74375253 -69411202 + L2 LINE L2 2700 3194 -78 203 340 78 10 chr12 74375791 74375894 -69410561 - L2 LINE L2 -2935 379 270 461 249 18 122 chr12 74376803 74377024 -69409431 + MER21B LTR ERV1 12 209 -654 2719 45 0 0 chr12 74377025 74377336 -69409119 + AluY SINE Alu 1 311 0 1289 201 112 27 chr12 74377336 74377874 -69408581 + MER21B LTR ERV1 196 806 -57 4976 157 13 44 chr12 74378475 74378889 -69407566 - L1MB1 LINE L1 -1 6167 5742 599 186 73 0 chr12 74378889 74379013 -69407442 - FLAM_A SINE Alu 0 133 1 4976 157 13 44 chr12 74379013 74379650 -69406805 - L1MB1 LINE L1 -426 5742 5142 261 332 137 28 chr12 74379713 74380227 -69406228 + L2 LINE L2 1978 2625 -689 * 320 279 116 23 chr12 74380221 74380350 -69406105 + MIR SINE MIR 11 151 -111 372 361 71 18 chr12 74380872 74381041 -69405414 - L2 LINE L2 0 3272 3095 357 244 22 22 chr12 74381056 74381146 -69405309 - MER5B DNA MER1_type -16 162 73 2122 118 26 3 chr12 74381172 74381477 -69404978 + AluSx SINE Alu 1 312 0 306 0 0 0 chr12 74381578 74381612 -69404843 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 438 303 59 27 chr12 74381775 74382090 -69404365 + MLT1L LTR MaLR 168 523 -92 1940 149 0 52 chr12 74382102 74382431 -69404024 - AluJb SINE Alu 0 312 1 205 317 94 37 chr12 74382544 74382764 -69403691 - L2 LINE L2 -248 3065 2796 910 242 162 42 chr12 74382767 74383222 -69403233 + MLT1H LTR MaLR 1 549 0 605 304 78 46 chr12 74383264 74383466 -69402989 - L2 LINE L2 -587 2727 2508 2093 134 0 0 chr12 74383466 74383758 -69402697 + AluSx SINE Alu 5 296 -16 605 304 78 46 chr12 74383758 74383900 -69402555 - L2 LINE L2 -806 2508 2372 257 306 213 0 chr12 74385313 74385421 -69401034 - MIR SINE MIR -13 249 119 365 313 112 65 chr12 74385529 74386080 -69400375 + L2 LINE L2 2675 3264 -8 331 308 135 19 chr12 74386358 74386514 -69399941 + MIR3 SINE MIR 30 203 -5 1440 160 53 25 chr12 74387429 74387710 -69398745 - AluJo SINE Alu -21 291 3 378 228 32 112 chr12 74388111 74388182 -69398273 - MIR SINE MIR -65 143 109 2000 152 0 3 chr12 74388182 74388479 -69397976 + AluSx SINE Alu 1 296 -16 378 228 32 112 chr12 74388479 74388564 -69397891 - MIR SINE MIR -99 109 19 1712 201 0 0 chr12 74389821 74390124 -69396331 + AluJb SINE Alu 1 303 -9 192 77 0 0 chr12 74390170 74390196 -69396259 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 227 284 0 chr12 74390477 74390565 -69395890 - MER5A DNA MER1_type -27 162 50 211 176 0 0 chr12 74390667 74390701 -69395754 + C-rich Low_complexity Low_complexity 2 35 0 289 339 89 47 chr12 74390752 74390988 -69395467 - L2 LINE L2 -188 3084 2839 238 318 31 39 chr12 74391029 74391158 -69395297 - L3 LINE CR1 -112 1465 1338 2134 103 0 0 chr12 74391290 74391604 -69394851 + AluSg SINE Alu 1 314 0 5671 58 11 14 chr12 74391807 74392549 -69393906 - L1PA7 LINE L1 -6 6148 5409 741 244 98 79 chr12 74392815 74393131 -69393324 + MLT1G1 LTR MaLR 1 322 -273 274 200 0 0 chr12 74393141 74393185 -69393270 + MLT1G1 LTR MaLR 476 520 -65 1611 208 0 10 chr12 74393185 74393498 -69392957 + AluJo SINE Alu 1 310 -2 518 313 119 54 chr12 74393699 74394051 -69392404 + ERVL LTR ERVL 1758 2171 -3522 367 306 9 18 chr12 74394051 74394162 -69392293 + ERVL LTR ERVL 2975 3084 -1912 559 269 86 11 chr12 74394235 74394463 -69391992 + ERVL LTR ERVL 3197 3476 -2227 810 244 144 87 chr12 74394859 74395091 -69391364 + HAL1 LINE L1 1646 1863 -644 2059 138 0 0 chr12 74395091 74395380 -69391075 - AluJb SINE Alu -23 289 1 810 244 144 87 chr12 74395380 74395857 -69390598 + HAL1 LINE L1 1863 2395 -112 679 214 28 0 chr12 74395946 74396091 -69390364 - MIR SINE MIR 0 262 114 6760 72 3 43 chr12 74396131 74397115 -69389340 + L1MA1 LINE L1 5357 6301 -1 1702 129 4 11 chr12 74397139 74397402 -69389053 + AluSq SINE Alu 50 310 -3 230 333 20 33 chr12 74397504 74397654 -69388801 + L1ME LINE L1 5458 5605 -516 374 230 129 39 chr12 74397856 74398034 -69388421 - L1MC4a LINE L1 -1907 5901 5708 186 118 0 0 chr12 74398181 74398215 -69388240 + (A)n Simple_repeat Simple_repeat 1 34 0 242 248 83 55 chr12 74398971 74399189 -69387266 - L1M4 LINE L1 -2717 3429 3206 274 304 0 25 chr12 74399535 74399614 -69386841 + L2 LINE L2 3187 3263 -9 1415 208 65 27 chr12 74399892 74400186 -69386269 - AluJo SINE Alu -1 311 7 1380 188 47 47 chr12 74400634 74400711 -69385744 + MLT1C LTR MaLR 84 160 -307 2158 135 0 0 chr12 74400711 74401008 -69385447 - AluSx SINE Alu -15 297 1 1380 188 47 47 chr12 74401008 74401314 -69385141 + MLT1C LTR MaLR 159 467 0 283 264 111 29 chr12 74401317 74401487 -69384968 - L1MC4a LINE L1 -515 5606 5412 832 125 28 28 chr12 74401487 74401631 -69384824 - L1MA9 LINE L1 0 6312 6169 1844 112 56 33 chr12 74401645 74401950 -69384505 + MER7A DNA MER2_type 1 310 -36 21 57 0 0 chr12 74402255 74402290 -69384165 + AT_rich Low_complexity Low_complexity 1 35 0 2461 31 41 0 chr12 74402337 74402631 -69383824 - AluY SINE Alu -5 306 1 24 53 0 0 chr12 74402745 74402783 -69383672 + AT_rich Low_complexity Low_complexity 1 38 0 4347 167 45 15 chr12 74402893 74403944 -69382511 - L1MB8 LINE L1 -6 6172 5091 1013 238 60 21 chr12 74403946 74404227 -69382228 - L1MB8 LINE L1 -1114 5032 4741 14582 116 37 30 chr12 74404227 74405081 -69381374 + Tigger1 DNA MER2_type 1 848 -1570 1715 160 31 0 chr12 74405081 74405369 -69381086 + AluJb SINE Alu 1 297 -15 14582 116 37 30 chr12 74405369 74405956 -69380499 + Tigger1 DNA MER2_type 848 1429 -989 2109 143 0 6 chr12 74405956 74406270 -69380185 + AluSx SINE Alu 1 312 0 14582 116 37 30 chr12 74406270 74406537 -69379918 + Tigger1 DNA MER2_type 1429 1693 -725 2109 125 3 20 chr12 74406537 74406842 -69379613 + AluSx SINE Alu 1 300 -12 14582 116 37 30 chr12 74406842 74407527 -69378928 + Tigger1 DNA MER2_type 1693 2413 -5 4087 183 20 40 chr12 74407528 74407897 -69378558 - L1MB8 LINE L1 -1416 4730 4355 1958 142 10 23 chr12 74407897 74408206 -69378249 - AluJb SINE Alu -7 305 1 4087 183 20 40 chr12 74408206 74408807 -69377648 - L1MB8 LINE L1 -1791 4355 3780 932 178 89 0 chr12 74408805 74409007 -69377448 + L1MB8 LINE L1 3585 3804 -2342 * 200 278 56 0 chr12 74409043 74409097 -69377358 + MER5A DNA MER1_type 66 122 -67 * 531 189 0 90 chr12 74409092 74409138 -69377317 - MER5A DNA MER1_type -78 111 62 1568 179 23 36 chr12 74409138 74409439 -69377016 - AluJo SINE Alu -15 297 1 531 189 0 90 chr12 74409439 74409514 -69376941 - MER5A DNA MER1_type -127 62 1 22 0 0 0 chr12 74409604 74409626 -69376829 + AT_rich Low_complexity Low_complexity 1 22 0 997 208 143 42 chr12 74410790 74411055 -69375400 - AluJo SINE Alu -10 292 1 1687 201 66 54 chr12 74411143 74411640 -69374815 - MLT1D LTR MaLR 0 505 3 1153 283 93 55 chr12 74412085 74413053 -69373402 + L2 LINE L2 2303 3308 -5 2005 124 0 0 chr12 74413637 74413911 -69372544 + AluSx SINE Alu 3 276 -36 194 0 0 37 chr12 74413913 74413940 -69372515 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr12 74414091 74414128 -69372327 + AT_rich Low_complexity Low_complexity 1 37 0 2486 58 3 7 chr12 74414184 74414494 -69371961 + AluY SINE Alu 1 309 -2 763 182 28 34 chr12 74414615 74414791 -69371664 + MER5B DNA MER1_type 1 175 -3 195 162 0 0 chr12 74416900 74416937 -69369518 + T-rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr12 74418087 74418116 -69368339 + GC_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 74418141 74418167 -69368288 + (CCG)n Simple_repeat Simple_repeat 3 28 0 34 65 0 0 chr12 74418230 74418292 -69368163 + GC_rich Low_complexity Low_complexity 1 62 0 258 32 0 0 chr12 74418581 74418612 -69367843 + (CCCCG)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr12 74418748 74418769 -69367686 + AT_rich Low_complexity Low_complexity 1 21 0 311 303 65 110 chr12 74418777 74419286 -69367169 - L1M2 LINE L1 -5808 1041 556 22 0 0 0 chr12 74421988 74422010 -69364445 + AT_rich Low_complexity Low_complexity 1 22 0 830 188 120 78 chr12 74422331 74422688 -69363767 - MLT1A2 LTR MaLR -2 372 1 345 333 85 24 chr12 74423604 74423769 -69362686 - L3 LINE CR1 -110 1467 1293 979 42 25 0 chr12 74423796 74423916 -69362539 + AluY SINE Alu 182 304 -7 256 280 84 9 chr12 74423925 74424032 -69362423 - L3 LINE CR1 -296 1281 1167 219 128 77 0 chr12 74424346 74424385 -69362070 - L2 LINE L2 -575 2739 2698 197 246 9 118 chr12 74426474 74426545 -69359910 - L3 LINE CR1 -307 1270 1214 387 126 362 0 chr12 74426545 74426672 -69359783 + MER104 DNA MER2_type 5 177 -3 197 246 9 118 chr12 74426672 74426710 -69359745 - L3 LINE CR1 -363 1214 1173 433 284 88 104 chr12 74426763 74427294 -69359161 - L3 LINE CR1 -104 1473 951 199 366 167 19 chr12 74427356 74427572 -69358883 - L3 LINE CR1 -737 840 593 225 0 0 0 chr12 74430854 74430879 -69355576 + (T)n Simple_repeat Simple_repeat 1 25 0 2130 115 0 16 chr12 74431418 74431723 -69354732 + AluSc SINE Alu 1 300 -9 389 298 144 16 chr12 74432383 74432571 -69353884 - MIR SINE MIR -5 257 46 233 390 50 0 chr12 74433469 74433569 -69352886 + L2 LINE L2 3204 3308 -5 1533 162 68 40 chr12 74433954 74434305 -69352150 - MER46B DNA MER2_type 0 236 1 21 0 0 0 chr12 74434606 74434627 -69351828 + AT_rich Low_complexity Low_complexity 1 21 0 1595 194 0 28 chr12 74434786 74435075 -69351380 - AluJo SINE Alu -31 281 1 28 29 0 0 chr12 74435913 74435948 -69350507 + AT_rich Low_complexity Low_complexity 1 35 0 862 190 10 62 chr12 74436336 74436531 -69349924 + MER5A DNA MER1_type 5 189 0 294 276 94 74 chr12 74436630 74436833 -69349622 - MIR SINE MIR -7 255 49 2387 57 7 10 chr12 74437141 74437442 -69349013 - AluY SINE Alu -11 300 1 1538 171 24 21 chr12 74440060 74440347 -69346108 - AluJo SINE Alu -24 288 1 351 323 104 31 chr12 74441008 74441200 -69345255 + MIR SINE MIR 47 252 -10 224 232 18 0 chr12 74441833 74441889 -69344566 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 38 0 0 0 chr12 74443013 74443051 -69343404 + AT_rich Low_complexity Low_complexity 1 38 0 4823 264 173 32 chr12 74443105 74443607 -69342848 - L2 LINE L2 -8 3305 2875 1927 125 44 14 chr12 74443607 74443903 -69342552 + AluSx SINE Alu 1 305 -7 4823 264 173 32 chr12 74443903 74445679 -69340776 - L2 LINE L2 -438 2875 1351 198 0 0 0 chr12 74445679 74445701 -69340754 + (TG)n Simple_repeat Simple_repeat 2 23 0 4823 264 173 32 chr12 74445701 74445715 -69340740 - L2 LINE L2 -1962 1351 1340 420 111 0 0 chr12 74445715 74445778 -69340677 + (CA)n Simple_repeat Simple_repeat 2 64 0 4823 264 173 32 chr12 74445778 74445933 -69340522 - L2 LINE L2 -1973 1340 508 22 0 0 0 chr12 74446807 74446829 -69339626 + AT_rich Low_complexity Low_complexity 1 22 0 521 335 14 14 chr12 74447871 74448092 -69338363 + L3 LINE CR1 982 1202 -375 912 176 8 114 chr12 74448577 74448822 -69337633 + MER20 DNA MER1_type 1 219 0 201 175 0 0 chr12 74449145 74449185 -69337270 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 236 231 0 0 chr12 74449993 74450045 -69336410 + L2 LINE L2 3261 3312 -1 421 217 143 25 chr12 74450821 74450982 -69335473 - MER104 DNA MER2_type 0 180 1 243 266 26 136 chr12 74452466 74452620 -69333835 + L2 LINE L2 3177 3313 0 210 247 14 68 chr12 74452578 74452651 -69333804 - MER91B DNA MER1_type -94 96 28 * 21 0 0 0 chr12 74456183 74456204 -69330251 + AT_rich Low_complexity Low_complexity 1 21 0 747 158 0 0 chr12 74456977 74457097 -69329358 - L2 LINE L2 -2 3311 3192 604 275 94 23 chr12 74457180 74457351 -69329104 - MIR3 SINE MIR -5 203 21 298 335 141 6 chr12 74459168 74459338 -69327117 - MIR3 SINE MIR -6 202 10 435 244 168 8 chr12 74459374 74459505 -69326950 - MER5B DNA MER1_type -26 152 1 622 241 146 14 chr12 74460228 74460448 -69326007 + L2 LINE L2 2404 2652 -662 217 288 81 81 chr12 74460444 74460555 -69325900 + L2 LINE L2 3203 3313 0 * 397 253 353 20 chr12 74460716 74460866 -69325589 + MIR SINE MIR 57 256 -6 186 43 0 0 chr12 74460867 74460890 -69325565 + (TG)n Simple_repeat Simple_repeat 2 24 0 217 261 54 76 chr12 74461440 74461532 -69324923 - L2 LINE L2 -2 3270 3181 1015 194 40 10 chr12 74462486 74462687 -69323768 + MER6B DNA MER2_type 1 207 -3 23 68 0 0 chr12 74464747 74464791 -69321664 + AT_rich Low_complexity Low_complexity 1 44 0 429 147 0 0 chr12 74464794 74464862 -69321593 - MIR SINE MIR -1 261 194 195 42 0 0 chr12 74465047 74465071 -69321384 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 74465778 74465799 -69320656 + AT_rich Low_complexity Low_complexity 1 21 0 245 296 35 17 chr12 74466076 74466191 -69320264 - L2 LINE L2 -86 3227 3111 290 49 20 40 chr12 74466306 74466362 -69320093 + L1PB2 LINE L1 6097 6151 0 225 0 0 0 chr12 74467155 74467180 -69319275 + (A)n Simple_repeat Simple_repeat 1 25 0 548 84 0 12 chr12 74467455 74467538 -69318917 + L1PA8 LINE L1 6091 6172 0 250 313 21 0 chr12 74467551 74467647 -69318808 - L1M4 LINE L1 -3715 2431 2334 459 251 295 11 chr12 74468598 74468781 -69317674 + MIR SINE MIR 20 254 -8 29 47 0 0 chr12 74469280 74469323 -69317132 + AT_rich Low_complexity Low_complexity 1 43 0 2240 94 0 0 chr12 74469628 74469915 -69316540 + AluSp SINE Alu 1 287 -26 270 0 0 0 chr12 74469924 74469954 -69316501 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 500 270 69 31 chr12 74470395 74470554 -69315901 - MIR SINE MIR -86 176 12 643 298 128 48 chr12 74470768 74470968 -69315487 + L1M4 LINE L1 4700 4883 -1263 532 268 14 36 chr12 74470968 74471188 -69315267 + MER58C DNA MER1_type 1 215 0 643 298 128 48 chr12 74471188 74471628 -69314827 + L1M4 LINE L1 4883 5391 -755 455 227 153 61 chr12 74471974 74472137 -69314318 - MIR SINE MIR -84 178 1 1959 140 17 43 chr12 74474554 74474905 -69311550 + MER2 DNA MER2_type 3 344 0 29 0 0 0 chr12 74474924 74474953 -69311502 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr12 74476183 74476207 -69310248 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 252 0 0 0 chr12 74476206 74476234 -69310221 + (GA)n Simple_repeat Simple_repeat 1 28 0 207 195 0 0 chr12 74476350 74476391 -69310064 + GA-rich Low_complexity Low_complexity 1 41 0 666 291 128 45 chr12 74476621 74477068 -69309387 - L2 LINE L2 -352 2962 2479 682 152 29 0 chr12 74477234 74477339 -69309116 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3130 141 120 20 chr12 74477337 74477989 -69308466 + Tigger3(Golem) DNA MER2_type 2298 3014 -15 1959 137 0 13 chr12 74478333 74478633 -69307822 + AluSx SINE Alu 1 296 -16 192 40 0 0 chr12 74478896 74478921 -69307534 + (A)n Simple_repeat Simple_repeat 1 25 0 914 139 40 13 chr12 74479323 74479474 -69306981 + THE1B LTR MaLR 1 155 -209 42861 40 11 1 chr12 74479474 74485565 -69300890 + L1PA4 LINE L1 4 6152 -3 1345 95 67 9 chr12 74485575 74485785 -69300670 + THE1B LTR MaLR 141 362 -2 243 292 216 23 chr12 74485802 74486107 -69300348 + L2 LINE L2 2614 2977 -337 21 0 0 0 chr12 74486178 74486199 -69300256 + AT_rich Low_complexity Low_complexity 1 21 0 693 274 79 14 chr12 74486199 74486414 -69300041 - MIR SINE MIR -32 230 2 2003 136 3 7 chr12 74486754 74487056 -69299399 + AluSx SINE Alu 3 303 -9 225 196 118 20 chr12 74489869 74489920 -69296535 - L2 LINE L2 0 3272 3217 234 0 0 0 chr12 74490849 74490875 -69295580 + (A)n Simple_repeat Simple_repeat 1 26 0 2155 114 7 0 chr12 74491331 74491628 -69294827 + AluSp SINE Alu 1 299 -14 807 272 57 1 chr12 74492107 74492386 -69294069 + L2 LINE L2 2785 3084 -229 1183 233 77 34 chr12 74492386 74492836 -69293619 - L1MC4a LINE L1 -236 7572 7098 2436 60 0 0 chr12 74492836 74493134 -69293321 - AluY SINE Alu -13 298 1 1183 233 77 34 chr12 74493134 74493180 -69293275 - L1MC4a LINE L1 -710 7098 7055 665 122 149 0 chr12 74493968 74494075 -69292380 + FLAM_C SINE Alu 5 127 -6 2064 270 65 49 chr12 74494094 74495742 -69290713 + L1MEc LINE L1 5 1696 -4519 233 273 30 30 chr12 74495745 74495844 -69290611 + GA-rich Low_complexity Low_complexity 5 103 0 224 328 0 0 chr12 74495948 74496006 -69290449 - L2 LINE L2 -220 3052 2995 320 218 161 35 chr12 74496100 74496187 -69290268 - L2 LINE L2 -27 3286 3189 2172 112 0 19 chr12 74496340 74496653 -69289802 + AluSq SINE Alu 1 307 -6 553 271 95 56 chr12 74496781 74497087 -69289368 + L1MEd LINE L1 510 827 -5292 228 265 0 31 chr12 74497258 74497356 -69289099 + L1MEd LINE L1 2756 2850 -3279 342 259 195 36 chr12 74497367 74497618 -69288837 + L1MEd LINE L1 3068 3358 -2771 381 313 132 7 chr12 74497689 74497961 -69288494 + L1MEd LINE L1 4177 4482 -1647 275 281 112 46 chr12 74497987 74498435 -69288020 + L1MEd LINE L1 4561 5046 -1083 2174 92 6 25 chr12 74499274 74499589 -69286866 + AluY SINE Alu 1 309 -2 326 266 89 0 chr12 74499782 74499861 -69286594 + MER119 DNA MER1_type 34 119 -464 414 232 105 0 chr12 74499873 74499968 -69286487 + MER119 DNA MER1_type 458 562 -21 24 67 0 0 chr12 74500193 74500238 -69286217 + AT_rich Low_complexity Low_complexity 1 45 0 1929 148 0 7 chr12 74500247 74500544 -69285911 + AluSx SINE Alu 6 300 -12 2133 102 3 32 chr12 74500544 74500858 -69285597 + AluSp SINE Alu 1 306 -7 210 71 0 0 chr12 74501113 74501141 -69285314 + (T)n Simple_repeat Simple_repeat 1 28 0 381 22 0 0 chr12 74501279 74501325 -69285130 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 908 168 0 0 chr12 74501334 74501477 -69284978 - FRAM SINE Alu -35 141 1 282 198 0 74 chr12 74501577 74501658 -69284797 - MER104 DNA Tc2 -88 92 18 296 317 62 28 chr12 74502670 74502786 -69283669 - L2 LINE L2 -5 3308 3185 952 184 0 88 chr12 74502786 74503014 -69283441 + MER3 DNA MER1_type 1 208 -1 296 317 62 28 chr12 74503014 74503042 -69283413 - L2 LINE L2 -128 3185 3159 2181 81 27 3 chr12 74503408 74503703 -69282752 + AluSg SINE Alu 4 305 -5 726 135 15 4 chr12 74504349 74504489 -69281966 - L1MA4A LINE L1 -125 6178 6043 458 58 43 0 chr12 74504729 74504798 -69281657 + L1MA4A LINE L1 6224 6295 -8 27 0 0 0 chr12 74507408 74507435 -69279020 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr12 74507814 74507863 -69278592 + AT_rich Low_complexity Low_complexity 1 49 0 495 257 111 6 chr12 74509190 74509361 -69277094 + L1MD3 LINE L1 287 475 -6132 * 591 261 88 8 chr12 74509335 74509688 -69276767 + L1MD3 LINE L1 1352 1851 -4756 1143 236 87 18 chr12 74509688 74510077 -69276378 + L1MD3 LINE L1 5837 6252 -2023 212 165 99 11 chr12 74510077 74510136 -69276319 + MIR3 SINE MIR 101 167 -41 203 259 52 0 chr12 74511258 74511316 -69275139 + MIR SINE MIR 91 151 -111 2242 274 176 19 chr12 74511343 74512278 -69274177 - L2 LINE L2 -1240 2074 993 539 323 36 5 chr12 74512278 74512470 -69273985 + L2 LINE L2 2863 3060 -253 265 316 125 22 chr12 74512482 74512618 -69273837 + L2 LINE L2 3163 3312 -1 622 247 73 27 chr12 74513103 74513115 -69273340 + MLT1L LTR MaLR 131 141 -474 2124 116 26 0 chr12 74513115 74513417 -69273038 + AluSq SINE Alu 1 310 -3 622 247 73 27 chr12 74513417 74513789 -69272666 + MLT1L LTR MaLR 141 558 -57 1499 205 93 28 chr12 74514947 74515420 -69271035 + Charlie4a DNA MER1_type 5 508 0 252 213 12 125 chr12 74515578 74515658 -69270797 - MIR SINE MIR -108 100 30 476 263 53 112 chr12 74515892 74516027 -69270428 - Charlie8 DNA MER1_type -1928 489 348 1623 159 3 51 chr12 74516027 74516341 -69270114 + AluJo SINE Alu 1 299 -13 476 263 53 112 chr12 74516341 74516528 -69269927 - Charlie8 DNA MER1_type -2069 348 186 665 246 82 14 chr12 74516529 74516749 -69269706 + L1MDa LINE L1 1865 2099 -4441 337 85 21 0 chr12 74516757 74516804 -69269651 - MER58A DNA MER1_type 0 224 177 * 1051 217 15 5 chr12 74516801 74517004 -69269451 - MER58A DNA MER1_type -19 205 1 379 282 72 11 chr12 74517006 74517187 -69269268 + L1MDa LINE L1 2100 2291 -4249 1433 248 54 31 chr12 74517201 74517648 -69268807 + MLT1C LTR MaLR 11 467 0 2904 249 89 48 chr12 74517650 74518365 -69268090 + L1MDa LINE L1 2345 3030 -3510 1859 103 10 57 chr12 74518365 74518687 -69267768 + AluSp SINE Alu 1 308 0 2904 249 89 48 chr12 74518687 74519844 -69266611 + L1MDa LINE L1 3030 4247 -2293 4003 246 87 40 chr12 74519845 74521814 -69264641 + L1M4 LINE L1 59 2382 -4756 1991 136 3 13 chr12 74521814 74522123 -69264332 + AluSx SINE Alu 1 306 -6 4003 246 87 40 chr12 74522123 74522183 -69264272 + L1M4 LINE L1 2382 2438 -4700 2238 60 0 7 chr12 74522212 74522519 -69263936 + AluY SINE Alu 1 305 0 3051 233 45 59 chr12 74522519 74523171 -69263284 + L1M4 LINE L1 3890 4519 -2438 2396 80 0 6 chr12 74523171 74523484 -69262971 + AluY SINE Alu 1 311 0 3051 233 45 59 chr12 74523484 74524059 -69262396 + L1M4 LINE L1 4519 5100 -1857 468 218 53 18 chr12 74524035 74524205 -69262250 + L1ME2 LINE L1 3251 3426 -3531 * 1757 230 83 25 chr12 74524269 74524882 -69261573 + L1ME2 LINE L1 5079 5727 -1230 678 241 90 43 chr12 74525086 74525409 -69261046 + L1ME2 LINE L1 6619 6956 -19 269 311 6 106 chr12 74525551 74525712 -69260743 + MIR3 SINE MIR 1 145 -63 661 293 180 37 chr12 74525763 74526241 -69260214 + L2 LINE L2 2757 3313 0 2338 64 0 22 chr12 74527120 74527432 -69259023 + AluY SINE Alu 1 305 -6 358 293 138 6 chr12 74527447 74527614 -69258841 - MIR SINE MIR -10 252 64 405 226 104 18 chr12 74527628 74527853 -69258602 + L1ME LINE L1 5597 5867 -254 189 0 0 0 chr12 74528183 74528204 -69258251 + (T)n Simple_repeat Simple_repeat 1 21 0 1995 142 3 6 chr12 74529776 74530087 -69256368 - AluSg SINE Alu 0 310 1 1916 198 114 35 chr12 74530201 74530530 -69255925 + MER44D DNA MER2_type 1 440 -2047 2246 83 0 7 chr12 74530530 74530830 -69255625 - AluSc SINE Alu -11 298 1 1916 198 114 35 chr12 74530830 74531009 -69255446 + MER44D DNA MER2_type 440 604 -1 269 308 50 8 chr12 74531142 74531262 -69255193 - MIR SINE MIR -137 125 1 21 0 0 0 chr12 74531476 74531497 -69254958 + AT_rich Low_complexity Low_complexity 1 21 0 228 342 0 25 chr12 74531601 74531680 -69254775 - L2 LINE L2 0 3313 3237 339 293 69 6 chr12 74531943 74532125 -69254330 - MIR SINE MIR -74 188 33 1824 151 3 0 chr12 74532320 74532611 -69253844 + AluJb SINE Alu 21 312 0 186 280 177 46 chr12 74533365 74533540 -69252915 + L2 LINE L2 2889 3086 -186 712 304 149 9 chr12 74534006 74534348 -69252107 + L2 LINE L2 2899 3288 -25 27 62 0 0 chr12 74535375 74535423 -69251032 + AT_rich Low_complexity Low_complexity 1 48 0 437 286 81 5 chr12 74536165 74536350 -69250105 - MER46C DNA MER2_type -2 336 138 248 366 110 37 chr12 74536984 74537230 -69249225 - L2 LINE L2 -5 3267 3004 2056 120 33 0 chr12 74537331 74537631 -69248824 + AluSx SINE Alu 1 310 -2 233 239 42 0 chr12 74541051 74541122 -69245333 + C-rich Low_complexity Low_complexity 2 75 0 23 0 0 0 chr12 74541246 74541269 -69245186 + GC_rich Low_complexity Low_complexity 1 23 0 180 245 59 98 chr12 74543199 74543301 -69243154 + MIR SINE MIR 153 250 -12 1078 306 61 43 chr12 74543650 74544159 -69242296 + L2 LINE L2 2323 2840 -474 868 245 163 38 chr12 74544235 74544688 -69241767 + MLT1J LTR MaLR 1 510 -1 580 253 157 80 chr12 74544689 74545052 -69241403 + L2 LINE L2 2923 3313 0 451 245 88 7 chr12 74545499 74545646 -69240809 + L1ME LINE L1 5497 5655 -466 2201 87 14 7 chr12 74545648 74545937 -69240518 + AluSx SINE Alu 1 291 -21 2085 131 0 25 chr12 74545937 74546251 -69240204 + AluSx SINE Alu 1 306 -6 242 198 161 0 chr12 74546320 74546401 -69240054 + L1ME LINE L1 5756 5849 -272 3373 198 31 57 chr12 74546942 74547807 -69238648 - MER21B LTR ERV1 -1 862 20 235 265 0 0 chr12 74547833 74547882 -69238573 - MER21B LTR ERV1 -793 70 22 1495 268 62 37 chr12 74548327 74549052 -69237403 + L1M3e LINE L1 1625 2367 -5122 960 154 7 0 chr12 74549065 74549208 -69237247 - FAM SINE Alu -16 169 26 12625 189 40 51 chr12 74549283 74550558 -69235897 + L1MA9 LINE L1 2178 3465 -4266 2565 71 0 0 chr12 74550558 74550867 -69235588 + AluY SINE Alu 1 309 -2 12625 189 40 51 chr12 74550867 74551781 -69234674 + L1MA9 LINE L1 3465 4387 -3344 2287 96 0 0 chr12 74551781 74552073 -69234382 + AluSq SINE Alu 21 312 -1 12625 189 40 51 chr12 74552073 74552451 -69234004 + L1MA9 LINE L1 4387 4768 -2963 637 236 0 0 chr12 74552451 74552574 -69233881 + FLAM_A SINE Alu 1 123 -10 12625 189 40 51 chr12 74552574 74554759 -69231696 + L1MA9 LINE L1 4768 6975 -756 1874 160 0 0 chr12 74554759 74555046 -69231409 + AluSx SINE Alu 1 287 -25 12625 189 40 51 chr12 74555046 74555413 -69231042 + L1MA9 LINE L1 6975 7344 -387 261 0 0 0 chr12 74555413 74555442 -69231013 + (CA)n Simple_repeat Simple_repeat 2 30 0 12625 189 40 51 chr12 74555442 74555478 -69230977 + L1MA9 LINE L1 7344 7379 -352 2218 94 0 20 chr12 74555478 74555777 -69230678 + AluSg SINE Alu 1 293 -17 12625 189 40 51 chr12 74555777 74556255 -69230200 + L1MA9 LINE L1 7379 7731 0 330 247 112 0 chr12 74556450 74556539 -69229916 - L2 LINE L2 -14 3258 3160 1433 192 77 0 chr12 74556678 74556938 -69229517 - AluJb SINE Alu -31 281 2 338 326 10 0 chr12 74556956 74557054 -69229401 + L2 LINE L2 3215 3313 0 788 291 36 22 chr12 74557925 74558356 -69228099 + MLT1J LTR MaLR 31 504 -7 239 94 245 0 chr12 74558770 74558823 -69227632 - MIR SINE MIR -71 191 126 1092 262 56 17 chr12 74558930 74559575 -69226880 - L1MEc LINE L1 -3689 2526 1897 21 0 0 0 chr12 74559599 74559620 -69226835 + AT_rich Low_complexity Low_complexity 1 21 0 6050 74 21 49 chr12 74559620 74561588 -69224867 - SVA Other Other -520 1384 1 284 328 36 0 chr12 74561735 74561927 -69224528 + L1ME4a LINE L1 5588 5786 -335 21 57 0 0 chr12 74561978 74562013 -69224442 + AT_rich Low_complexity Low_complexity 1 35 0 375 207 48 41 chr12 74562023 74562168 -69224287 + L1ME4a LINE L1 5969 6114 -7 389 307 101 40 chr12 74563093 74563242 -69223213 - MIR SINE MIR 0 262 93 9259 28 6 0 chr12 74563242 74565171 -69221284 + L1PA4 LINE L1 4226 6154 -1 389 307 101 40 chr12 74565171 74565249 -69221206 - MIR SINE MIR -169 93 21 2406 64 7 3 chr12 74566435 74566730 -69219725 + AluY SINE Alu 1 296 -15 994 152 6 12 chr12 74567855 74568026 -69218429 - MSTB LTR MaLR -48 378 209 217 230 27 0 chr12 74568104 74568178 -69218277 + GA-rich Low_complexity Low_complexity 1 76 0 1888 151 3 43 chr12 74568327 74568652 -69217803 - AluJo SINE Alu 0 312 1 765 154 0 0 chr12 74568856 74568979 -69217476 + FLAM_C SINE Alu 1 123 -10 208 159 23 23 chr12 74569304 74569348 -69217107 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2288 92 16 7 chr12 74570181 74570485 -69215970 + AluSq SINE Alu 1 307 -6 539 259 202 16 chr12 74571456 74571699 -69214756 - L2 LINE L2 -28 3285 2998 689 315 28 39 chr12 74571899 74572255 -69214200 - L2 LINE L2 -1 3312 2961 201 147 0 0 chr12 74572428 74572462 -69213993 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2279 104 0 10 chr12 74572526 74572834 -69213621 - AluSx SINE Alu -7 305 1 353 69 0 35 chr12 74573620 74573678 -69212777 + MADE1 DNA Mariner 1 56 -24 247 196 0 71 chr12 74574884 74574940 -69211515 - MER45 DNA AcHobo -1528 53 2 1030 264 105 75 chr12 74575900 74576594 -69209861 - L2 LINE L2 -95 3218 2517 249 232 21 113 chr12 74576836 74577030 -69209425 - L1ME LINE L1 -253 5868 5693 240 159 16 0 chr12 74577159 74577222 -69209233 - L1PB1 LINE L1 0 6151 6088 * 1522 90 19 60 chr12 74577219 74577485 -69208970 + L1PB1 LINE L1 5795 6049 -102 436 307 165 23 chr12 74578070 74578288 -69208167 - MIR SINE MIR -6 256 8 1781 102 113 4 chr12 74578895 74579160 -69207295 + AluSg1 SINE Alu 1 294 -15 2199 99 0 0 chr12 74579399 74579711 -69206744 - AluSx SINE Alu 0 312 1 1907 191 72 2 chr12 74579796 74580226 -69206229 + MLT1C LTR MaLR 6 465 -2 236 317 50 30 chr12 74580228 74580329 -69206126 - L2 LINE L2 -241 3072 2970 400 260 115 10 chr12 74580477 74580581 -69205874 - MIR SINE MIR -146 116 2 620 310 35 15 chr12 74580752 74580949 -69205506 - MIR SINE MIR -44 218 18 521 283 85 23 chr12 74580969 74581227 -69205228 - L1ME3 LINE L1 -11 6151 5878 1211 169 52 144 chr12 74581656 74582058 -69204397 - MLT1A1 LTR MaLR 0 365 1 357 306 43 14 chr12 74582201 74582343 -69204112 + MIR SINE MIR 39 189 -67 2195 84 3 3 chr12 74582830 74583136 -69203319 - AluSp SINE Alu 0 306 1 1351 252 58 34 chr12 74583332 74583530 -69202925 + L1M3e LINE L1 1 193 -6837 1089 152 69 131 chr12 74583530 74583919 -69202536 + MLT1A1 LTR MaLR 1 365 0 1351 252 58 34 chr12 74583919 74584207 -69202248 + L1M3e LINE L1 193 1638 -5392 2897 150 34 72 chr12 74584370 74584447 -69202008 - L1MA8 LINE L1 -398 5893 5815 2157 87 0 21 chr12 74584447 74584734 -69201721 - AluSg SINE Alu -29 281 1 2897 150 34 72 chr12 74584734 74584770 -69201685 - L1MA8 LINE L1 -476 5815 5779 261 0 0 0 chr12 74584770 74584799 -69201656 + (TG)n Simple_repeat Simple_repeat 2 30 0 2897 150 34 72 chr12 74584799 74585166 -69201289 - L1MA8 LINE L1 -512 5779 5447 1874 160 0 0 chr12 74585166 74585453 -69201002 - AluSx SINE Alu -25 287 1 2897 150 34 72 chr12 74585453 74585701 -69200754 - L1MA8 LINE L1 -844 5447 5191 10046 92 11 4 chr12 74585811 74587287 -69199168 - HERVH LTR ERV1 -5606 2107 580 201 83 71 71 chr12 74587333 74587417 -69199038 + (CACAC)n Simple_repeat Simple_repeat 2 85 0 181 77 77 48 chr12 74587453 74587557 -69198898 + (CACAA)n Simple_repeat Simple_repeat 2 108 0 318 117 80 37 chr12 74587644 74587806 -69198649 + (CACAA)n Simple_repeat Simple_repeat 3 171 0 185 372 168 0 chr12 74589434 74589571 -69196884 - MIR3 SINE MIR -11 197 38 2085 132 0 0 chr12 74589875 74590171 -69196284 - AluSx SINE Alu -16 296 1 1852 191 19 8 chr12 74592307 74592668 -69193787 - MLT1A1 LTR MaLR 0 365 1 356 240 140 0 chr12 74593128 74593228 -69193227 + MER103 DNA DNA 52 165 -1 1351 107 58 5 chr12 74593329 74593534 -69192921 - MER30 DNA MER1_type -1 229 14 498 312 115 26 chr12 74593535 74593926 -69192529 - L2 LINE L2 -771 2543 2118 897 70 0 31 chr12 74596099 74596228 -69190227 + SVA Other Other 1261 1385 -1 220 141 31 31 chr12 74596569 74596633 -69189822 + (TA)n Simple_repeat Simple_repeat 2 65 0 226 301 39 19 chr12 74596955 74597058 -69189397 + Charlie7 DNA MER1_type 1 105 -2507 183 263 35 0 chr12 74597145 74597202 -69189253 + L2 LINE L2 3161 3219 -94 428 275 14 9 chr12 74597204 74597349 -69189106 + MIR SINE MIR 5 147 -65 198 0 0 0 chr12 74597817 74597839 -69188616 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 595 279 0 0 chr12 74597980 74598138 -69188317 + L1MEc LINE L1 1656 1813 -4583 556 163 12 45 chr12 74598344 74598602 -69187853 + AluJo SINE Alu 1 302 -10 1988 206 131 10 chr12 74598824 74599334 -69187121 - L1ME1 LINE L1 -5 6161 5590 805 272 215 8 chr12 74599521 74599995 -69186460 - MLT1G1 LTR MaLR -23 572 1 1040 32 0 0 chr12 74600688 74600814 -69185641 + L1PA3 LINE L1 6030 6155 0 713 257 64 5 chr12 74600938 74601125 -69185330 + MIR SINE MIR 64 261 -1 214 338 0 0 chr12 74601219 74601290 -69185165 + MIR SINE MIR 185 255 -7 301 360 0 24 chr12 74601346 74601471 -69184984 + MIR SINE MIR 67 188 -74 21 0 0 0 chr12 74601544 74601565 -69184890 + AT_rich Low_complexity Low_complexity 1 21 0 2349 75 7 0 chr12 74602598 74602892 -69183563 - AluY SINE Alu -14 297 2 3395 142 19 57 chr12 74603004 74603632 -69182823 + MER6A DNA MER2_type 1 604 -1 30 59 0 0 chr12 74603979 74604030 -69182425 + AT_rich Low_complexity Low_complexity 1 51 0 533 233 7 41 chr12 74604085 74604231 -69182224 - MIR3 SINE MIR -2 206 66 856 213 6 0 chr12 74604363 74604537 -69181918 + MER5B DNA MER1_type 2 176 -2 229 234 0 0 chr12 74604620 74604667 -69181788 + MER5A DNA MER1_type 7 53 -136 1413 158 5 0 chr12 74604670 74604891 -69181564 - AluJb SINE Alu -6 306 85 305 222 16 0 chr12 74604895 74604958 -69181497 + MER5A DNA MER1_type 52 115 -74 6877 61 10 0 chr12 74604962 74606399 -69180056 + L1PA6 LINE L1 4703 6148 -6 967 267 81 43 chr12 74606492 74607046 -69179409 - HAL1 LINE L1 -122 2385 1811 536 202 80 64 chr12 74607046 74607128 -69179327 + L2 LINE L2 2476 2555 -759 2122 113 3 47 chr12 74607128 74607447 -69179008 - AluSx SINE Alu -7 305 1 536 202 80 64 chr12 74607447 74607552 -69178903 + L2 LINE L2 2555 2666 -648 2607 194 4 47 chr12 74608134 74608664 -69177791 - MLT2B2 LTR ERVL -8 507 1 651 294 16 11 chr12 74608851 74609035 -69177420 - MIR SINE MIR -76 186 2 661 152 10 173 chr12 74609145 74609239 -69177216 + FRAM SINE Alu 1 48 -264 1294 99 0 6 chr12 74609239 74609421 -69177034 + L1PA10 LINE L1 5977 6157 -11 661 152 10 173 chr12 74609421 74609523 -69176932 + FRAM SINE Alu 48 165 -11 407 261 125 48 chr12 74609529 74609801 -69176654 - L1M4 LINE L1 -989 5157 4865 326 312 36 29 chr12 74610931 74611069 -69175386 - L1MEd LINE L1 -4642 1668 1530 1054 268 116 60 chr12 74611075 74611102 -69175353 - L1MEd LINE L1 -4833 1477 1453 720 184 0 16 chr12 74611102 74611227 -69175228 - FLAM_A SINE Alu -10 123 1 1054 268 116 60 chr12 74611227 74612267 -69174188 - L1MEd LINE L1 -4857 1453 312 255 287 8 41 chr12 74612388 74612510 -69173945 - L1MEd LINE L1 -5979 140 23 888 186 72 47 chr12 74612521 74612722 -69173733 - L1MCa LINE L1 -4757 1807 1596 342 63 25 101 chr12 74612722 74612801 -69173654 - L1PB4 LINE L1 -6 6150 6078 888 186 72 47 chr12 74612801 74612878 -69173577 - L1MCa LINE L1 -4968 1596 1522 819 274 94 13 chr12 74612882 74613200 -69173255 - L1MCa LINE L1 -5144 901 558 1506 270 35 60 chr12 74613300 74613867 -69172588 - L1MCa LINE L1 -5490 555 3 258 245 51 20 chr12 74613910 74614008 -69172447 - LTR67 LTR ERVL -6 551 451 376 332 72 26 chr12 74614328 74614521 -69171934 + L1ME3A LINE L1 5962 6163 -7 22 0 0 0 chr12 74614523 74614545 -69171910 + AT_rich Low_complexity Low_complexity 1 22 0 793 193 127 0 chr12 74614957 74615138 -69171317 - L1P LINE L1 -1237 4909 4706 2321 84 0 3 chr12 74615761 74616057 -69170398 + AluSp SINE Alu 1 295 -18 24 0 0 0 chr12 74616425 74616449 -69170006 + AT_rich Low_complexity Low_complexity 1 24 0 184 300 100 25 chr12 74616463 74616543 -69169912 - MIR3 SINE MIR -5 203 118 2408 88 3 0 chr12 74617476 74617781 -69168674 + AluSp SINE Alu 1 306 -7 244 281 141 33 chr12 74618327 74618448 -69168007 - MIR SINE MIR -5 257 124 562 296 132 12 chr12 74618714 74618957 -69167498 - L2 LINE L2 -88 3225 2954 1285 94 0 0 chr12 74619286 74619487 -69166968 - AluY SINE Alu 0 311 119 475 291 54 17 chr12 74619487 74619783 -69166672 - AluY SINE Alu 0 311 5 28 19 0 56 chr12 74620376 74620430 -69166025 + AT_rich Low_complexity Low_complexity 1 51 0 2414 53 40 0 chr12 74620924 74621223 -69165232 - AluY SINE Alu 0 311 1 1072 82 0 0 chr12 74621223 74621357 -69165098 - AluY SINE Alu -177 134 1 1441 249 58 43 chr12 74621363 74621848 -69164607 + MLT1H LTR MaLR 46 537 -12 195 42 0 0 chr12 74622514 74622538 -69163917 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 805 254 16 60 chr12 74623696 74623944 -69162511 - LTR16C LTR ERVL 0 491 255 304 288 87 70 chr12 74623952 74624181 -69162274 - L1M4 LINE L1 -1330 4816 4584 4924 167 25 29 chr12 74624363 74625250 -69161205 - MER54A LTR ERVL 0 901 19 264 338 90 7 chr12 74626074 74626219 -69160236 + MIR SINE MIR 7 163 -45 220 411 8 8 chr12 74626333 74626457 -69159998 + L2 LINE L2 2872 2995 -277 454 228 0 61 chr12 74626809 74626989 -69159466 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 37 69 0 0 chr12 74627355 74627427 -69159028 + AT_rich Low_complexity Low_complexity 1 72 0 1059 154 25 0 chr12 74627436 74627637 -69158818 - L1MA4 LINE L1 -29 6271 6066 934 129 0 0 chr12 74627637 74627776 -69158679 - AluSg/x SINE Alu 0 312 174 3916 136 11 8 chr12 74627780 74628420 -69158035 - L1MA4 LINE L1 -361 5939 5298 1919 113 31 3 chr12 74628439 74628731 -69157724 - L1PA13 LINE L1 -19 6144 5845 2222 122 48 0 chr12 74628731 74629067 -69157388 + L1PA13 LINE L1 5487 5838 -323 * 7232 202 30 3 chr12 74629063 74631245 -69155210 - L1 LINE L1 -841 5305 3010 1994 103 54 21 chr12 74631245 74631775 -69154680 - MER4A LTR ERV1 0 664 1 18242 121 83 45 chr12 74631781 74633040 -69153415 - MER4A-int LTR ERV1 -2 6596 5386 296 75 0 38 chr12 74633046 74633099 -69153356 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 400 99 0 0 chr12 74633099 74633155 -69153300 - L1PA11 LINE L1 -30 6134 6068 18242 121 83 45 chr12 74633155 74635515 -69150940 - MER4A-int LTR ERV1 -1212 5386 3116 4043 119 34 67 chr12 74635515 74636100 -69150355 + LTR8 LTR ERV1 1 559 -132 2048 124 0 41 chr12 74636100 74636414 -69150041 + AluSg SINE Alu 1 301 -9 4043 119 34 67 chr12 74636414 74636543 -69149912 + LTR8 LTR ERV1 559 691 0 18242 121 83 45 chr12 74636543 74636627 -69149828 - MER4A-int LTR ERV1 -3482 3116 3037 1742 162 58 30 chr12 74636627 74636992 -69149463 - THE1C LTR MaLR 0 375 1 18242 121 83 45 chr12 74636992 74638336 -69148119 - MER4A-int LTR ERV1 -3561 3037 196 1284 224 39 19 chr12 74638403 74638715 -69147740 - MER4A-int LTR ERV1 -4172 2159 1842 2594 101 172 10 chr12 74638863 74639411 -69147044 - MER4A-int LTR ERV1 -5912 686 1 1773 141 52 19 chr12 74639413 74639952 -69146503 - MER4A LTR ERV1 0 664 2 237 108 0 0 chr12 74639954 74639991 -69146464 - L1 LINE L1 -3134 3012 2976 2053 162 65 10 chr12 74640739 74641141 -69145314 + MSTB LTR MaLR 1 424 -2 30 0 0 0 chr12 74641552 74641582 -69144873 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr12 74641953 74641997 -69144458 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 74642067 74642090 -69144365 + AT_rich Low_complexity Low_complexity 1 23 0 196 244 22 0 chr12 74642231 74642276 -69144179 - MIR SINE MIR -37 225 180 275 277 24 12 chr12 74642463 74642546 -69143909 - MIR3 SINE MIR -10 198 115 2067 128 13 0 chr12 74642617 74642923 -69143532 - AluSx SINE Alu -2 310 1 213 224 0 0 chr12 74643019 74643077 -69143378 + (TG)n Simple_repeat Simple_repeat 1 58 0 254 324 101 36 chr12 74645733 74645794 -69140661 + L2 LINE L2 2724 2780 -534 2147 128 7 0 chr12 74645794 74646090 -69140365 + AluSx SINE Alu 1 298 -14 254 324 101 36 chr12 74646090 74646247 -69140208 + L2 LINE L2 2780 2956 -358 530 226 244 6 chr12 74646307 74646475 -69139980 - MIR SINE MIR -26 236 29 44 0 0 0 chr12 74646583 74646627 -69139828 + AT_rich Low_complexity Low_complexity 1 44 0 223 146 79 6 chr12 74646632 74646796 -69139659 + (TA)n Simple_repeat Simple_repeat 1 176 0 30 45 0 0 chr12 74646812 74646856 -69139599 + AT_rich Low_complexity Low_complexity 1 44 0 1596 125 56 26 chr12 74646863 74647167 -69139288 - THE1C LTR MaLR -45 330 18 1267 163 62 9 chr12 74647167 74647570 -69138885 + MER84 LTR ERVI 1 507 0 4869 94 49 13 chr12 74647570 74648322 -69138133 + MER84-int LTR ERV1 1 779 -4175 * 18473 83 9 17 chr12 74648321 74650958 -69135497 + MER84-int LTR ERV1 894 3507 -1447 941 114 13 60 chr12 74650958 74651107 -69135348 + AluSg SINE Alu 29 170 -140 1370 165 51 0 chr12 74651107 74651344 -69135111 - MER84-int LTR ERV1 -1210 3744 3496 953 126 0 0 chr12 74651344 74651502 -69134953 - AluSg/x SINE Alu 0 314 157 7686 84 24 21 chr12 74651518 74652654 -69133801 + MER84-int LTR ERV1 3816 4954 0 1045 182 103 7 chr12 74652655 74653041 -69133414 + MER84 LTR ERVI 2 507 0 10060 198 46 11 chr12 74653067 74655001 -69131454 - L1 LINE L1 -1214 4932 2891 2121 131 6 13 chr12 74655001 74655313 -69131142 - AluSg SINE Alu 0 310 1 10060 198 46 11 chr12 74655313 74655838 -69130617 - L1 LINE L1 -3255 2891 2386 2430 71 3 27 chr12 74655840 74656178 -69130277 + L1PA5 LINE L1 5820 6149 -5 3199 139 27 39 chr12 74656227 74656716 -69129739 + L1PB4 LINE L1 4982 5452 -704 1536 206 7 0 chr12 74656716 74656998 -69129457 - AluJo SINE Alu -28 284 1 3199 139 27 39 chr12 74656998 74657401 -69129054 + L1PB4 LINE L1 5452 5858 -298 1938 76 0 0 chr12 74657401 74657664 -69128791 + HERVH LTR ERV1 4572 4834 -2879 1441 143 23 4 chr12 74657692 74657957 -69128498 + HERVH LTR ERV1 5747 6016 -1697 * 3454 113 5 11 chr12 74657950 74658510 -69127945 + HERVH LTR ERV1 7157 7713 0 951 162 86 117 chr12 74658510 74658929 -69127526 + LTR7 LTR ERV1 1 406 -44 237 33 0 0 chr12 74658931 74658961 -69127494 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1486 151 70 0 chr12 74658963 74659235 -69127220 + L1PB4 LINE L1 5860 6150 -6 241 200 0 71 chr12 74659594 74659664 -69126791 - MIR SINE MIR -75 187 123 536 228 114 7 chr12 74659706 74659855 -69126600 + MIR SINE MIR 4 168 -94 250 333 103 0 chr12 74659920 74660007 -69126448 - L2 LINE L2 -29 3243 3148 291 244 0 12 chr12 74660127 74660213 -69126242 + L1MC2 LINE L1 6251 6335 -9 503 220 101 38 chr12 74660472 74660631 -69125824 + MIR SINE MIR 4 172 -90 26 50 0 0 chr12 74660658 74660698 -69125757 + AT_rich Low_complexity Low_complexity 1 40 0 2067 124 0 0 chr12 74660774 74661057 -69125398 + AluSq SINE Alu 1 283 -30 204 169 39 0 chr12 74661141 74661218 -69125237 + (TA)n Simple_repeat Simple_repeat 1 80 0 311 222 44 44 chr12 74661221 74661311 -69125144 - L1MC4 LINE L1 -1339 6703 6614 438 170 0 0 chr12 74661316 74661410 -69125045 + (TA)n Simple_repeat Simple_repeat 1 94 0 2061 123 7 3 chr12 74661411 74661703 -69124752 - AluSx SINE Alu -19 293 1 785 280 44 38 chr12 74661742 74662239 -69124216 + L1ME4a LINE L1 5548 6047 -74 1342 91 19 19 chr12 74662563 74662772 -69123683 + L1PB2 LINE L1 5941 6149 -2 828 165 0 0 chr12 74662864 74662991 -69123464 - FLAM_C SINE Alu -12 131 5 234 150 25 0 chr12 74662991 74663031 -69123424 - Alu SINE Alu -267 41 1 978 232 13 103 chr12 74663205 74663584 -69122871 - LTR16A1 LTR ERVL -10 447 103 2394 79 0 7 chr12 74663691 74663996 -69122459 - AluY SINE Alu -8 303 1 2196 112 20 0 chr12 74664007 74664311 -69122144 - AluSx SINE Alu -2 310 1 474 228 8 31 chr12 74664479 74664606 -69121849 - L2 LINE L2 -3 3310 3187 5785 92 22 0 chr12 74665124 74665971 -69120484 - L1MA2 LINE L1 0 6304 5439 8038 195 15 14 chr12 74665971 74667566 -69118889 - L1M1 LINE L1 -5953 1612 17 241 291 34 17 chr12 74668589 74668706 -69117749 + LTR67 LTR ERVL 428 546 -11 304 250 24 12 chr12 74668752 74668836 -69117619 + MIR3 SINE MIR 103 187 -21 200 197 0 30 chr12 74669271 74669337 -69117118 + (TATG)n Simple_repeat Simple_repeat 2 65 0 23 33 0 0 chr12 74669341 74669371 -69117084 + AT_rich Low_complexity Low_complexity 1 30 0 346 259 50 50 chr12 74669636 74669775 -69116680 - L1ME4a LINE L1 -5 6116 5978 584 303 76 20 chr12 74670234 74670432 -69116023 - MIR SINE MIR -47 215 7 314 330 11 0 chr12 74670657 74670751 -69115704 - MIR3 SINE MIR -14 194 100 567 368 21 39 chr12 74672263 74672548 -69113907 - L2 LINE L2 0 3272 2993 318 200 329 18 chr12 74672566 74672736 -69113719 - MIR SINE MIR -8 254 32 307 222 0 12 chr12 74672736 74672817 -69113638 + L1ME LINE L1 5607 5686 -435 1036 189 125 12 chr12 74672945 74673303 -69113152 - L1MB8 LINE L1 -64 6114 5694 2101 107 0 17 chr12 74673304 74673458 -69112997 - AluY SINE Alu -25 286 138 2276 73 0 3 chr12 74673458 74673479 -69112976 - AluY SINE Alu -9 302 282 213 39 0 0 chr12 74673479 74673505 -69112950 + (TG)n Simple_repeat Simple_repeat 1 26 0 2276 73 0 3 chr12 74673505 74673786 -69112669 - AluY SINE Alu -29 282 1 2101 107 0 17 chr12 74673786 74673922 -69112533 - AluY SINE Alu -173 138 1 467 124 11 0 chr12 74673946 74674035 -69112420 - L1MA4A LINE L1 -23 6280 6191 4633 170 48 8 chr12 74674040 74675712 -69110743 - L1MA4A LINE L1 -180 6123 4376 252 0 0 0 chr12 74675712 74675740 -69110715 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4633 170 48 8 chr12 74675740 74675880 -69110575 - L1MA4A LINE L1 -1927 4376 4243 11055 216 36 53 chr12 74676482 74677536 -69108919 - L1 LINE L1 -1888 4960 3890 258 32 0 0 chr12 74677536 74677567 -69108888 + (TG)n Simple_repeat Simple_repeat 1 31 0 1888 133 3 21 chr12 74677567 74677853 -69108602 - AluSx SINE Alu -31 281 1 11055 216 36 53 chr12 74677853 74679197 -69107258 - L1 LINE L1 -2957 3891 2526 2494 69 0 0 chr12 74679197 74679500 -69106955 - AluY SINE Alu -8 303 1 11055 216 36 53 chr12 74679500 74682025 -69104430 - L1 LINE L1 -4322 2526 1 568 122 84 9 chr12 74682061 74682168 -69104287 + MSTA LTR MaLR 1 115 -313 497 273 15 15 chr12 74682170 74682302 -69104153 + L1M2 LINE L1 1211 1342 -5507 1117 133 91 45 chr12 74682304 74682568 -69103887 + THE1C LTR MaLR 100 375 0 2428 75 16 0 chr12 74682618 74682926 -69103529 + AluSq SINE Alu 1 313 0 562 212 176 63 chr12 74683461 74683876 -69102579 + LTR37B LTR ERV1 7 468 0 180 0 0 0 chr12 74685262 74685282 -69101173 + (TTG)n Simple_repeat Simple_repeat 2 21 0 545 143 10 10 chr12 74685372 74685470 -69100985 + MER4A LTR ERV1 1 98 -566 366 142 25 5 chr12 74685470 74685590 -69100865 + MER4A LTR ERV1 261 441 -223 * 426 143 0 0 chr12 74685580 74685650 -69100805 + MER4A LTR ERV1 593 662 -2 752 184 184 81 chr12 74685880 74686189 -69100266 + LTR48 LTR ERV1 1 341 -446 583 213 0 0 chr12 74686189 74686297 -69100158 - FAM SINE Alu -13 172 65 1182 157 26 13 chr12 74686301 74686630 -69099825 + LTR48B LTR ERV1 324 644 0 2247 105 3 0 chr12 74686668 74686963 -69099492 - AluSg SINE Alu -14 296 1 1491 154 0 5 chr12 74686984 74687205 -69099250 - AluJo SINE Alu -6 306 87 400 312 58 7 chr12 74687469 74687623 -69098832 + MIR3 SINE MIR 16 177 -31 300 242 77 0 chr12 74688515 74688606 -69097849 - MLT1L LTR MaLR -517 98 1 935 68 45 0 chr12 74688789 74688922 -69097533 + MER34B LTR ERV1 1 139 -426 1929 133 36 42 chr12 74688965 74689350 -69097105 + MER34B LTR ERV1 148 530 -35 872 194 100 46 chr12 74689812 74690162 -69096293 + L1M4 LINE L1 4975 5343 -803 * 3159 210 115 84 chr12 74690152 74690806 -69095649 + L1MC3 LINE L1 6416 7048 -737 317 175 21 82 chr12 74690806 74690903 -69095552 + MLT1F1 LTR MaLR 35 125 -442 3159 210 115 84 chr12 74690903 74691480 -69094975 + L1MC3 LINE L1 7048 7785 0 288 240 13 0 chr12 74691704 74691779 -69094676 - U3 snRNA snRNA -133 84 9 2671 35 0 0 chr12 74691779 74692090 -69094365 + AluY SINE Alu 1 311 0 867 118 0 22 chr12 74692545 74692681 -69093774 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr12 74692684 74692713 -69093742 + (TA)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr12 74692712 74692737 -69093718 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 412 365 71 0 chr12 74692835 74693032 -69093423 - MIR SINE MIR -7 255 45 2595 239 67 18 chr12 74693135 74693961 -69092494 + L1ME1 LINE L1 5296 6161 -5 823 217 29 11 chr12 74695028 74695203 -69091252 + MER45A DNA AcHobo 1 178 0 254 306 35 12 chr12 74695386 74695471 -69090984 - L2 LINE L2 -23 3249 3163 5401 95 26 28 chr12 74695965 74696233 -69090222 - L1PA15 LINE L1 0 6165 5898 1940 147 6 31 chr12 74696233 74696736 -69089719 - AluSx SINE Alu 0 312 1 5401 95 26 28 chr12 74696736 74697326 -69089129 - L1PA15 LINE L1 -267 5898 5297 2394 82 3 0 chr12 74697326 74697630 -69088825 - AluY SINE Alu -6 305 1 5401 95 26 28 chr12 74697630 74698071 -69088384 - L1PA15 LINE L1 -868 5297 4857 679 156 0 0 chr12 74698071 74698180 -69088275 - AluSq/x SINE Alu -204 109 1 1069 183 37 0 chr12 74698180 74698421 -69088034 - L1 LINE L1 -1101 5045 4796 303 189 0 0 chr12 74698422 74698496 -69087959 - L1M4 LINE L1 -953 5193 5120 2144 185 26 33 chr12 74698530 74698799 -69087656 + LTR47A LTR ERVL 1 267 -185 3975 120 11 0 chr12 74698799 74699358 -69087097 + MER61E LTR ERV1 1 565 -4 2144 185 26 33 chr12 74699358 74699543 -69086912 + LTR47A LTR ERVL 267 452 0 287 255 71 21 chr12 74699577 74699718 -69086737 - L1M4 LINE L1 -1096 5050 4903 670 224 0 0 chr12 74699742 74699898 -69086557 - L1P LINE L1 -2641 3505 3350 1831 122 60 104 chr12 74699900 74700369 -69086086 - LTR7 LTR ERV1 -2 448 1 2369 82 45 13 chr12 74700369 74700747 -69085708 - HERVH LTR ERV1 0 7713 7324 395 143 63 0 chr12 74700747 74700810 -69085645 - HERVH LTR ERV1 -1894 5819 5753 2769 113 0 7 chr12 74700814 74701256 -69085199 - HERVH LTR ERV1 -3783 3930 3492 820 142 20 0 chr12 74701246 74701394 -69085061 - HERVH LTR ERV1 -4423 3290 3140 * 18910 92 6 35 chr12 74701388 74704464 -69081991 - HERVH LTR ERV1 -4726 2987 1 1925 128 80 57 chr12 74704466 74704904 -69081551 - LTR7 LTR ERV1 -2 448 1 634 225 25 5 chr12 74704905 74705105 -69081350 - L1P LINE L1 -2793 3353 3150 2768 242 74 15 chr12 74705305 74706200 -69080255 - L1ME1 LINE L1 -5 6161 5216 219 36 0 0 chr12 74706206 74706234 -69080221 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 1870 157 16 16 chr12 74706249 74706561 -69079894 - AluSx SINE Alu 0 312 1 47 53 0 0 chr12 74706619 74706694 -69079761 + AT_rich Low_complexity Low_complexity 1 75 0 2622 124 47 0 chr12 74706694 74707098 -69079357 - L1PA16 LINE L1 -17 6149 5727 405 186 10 41 chr12 74707098 74707195 -69079260 + LTR47B LTR ERVL 187 280 -163 1820 229 30 8 chr12 74707204 74707710 -69078745 - L1ME1 LINE L1 -985 5161 4645 405 54 0 0 chr12 74707720 74707776 -69078679 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 428 154 13 0 chr12 74707780 74707858 -69078597 - AluJ/FRAM SINE Alu -13 299 221 1366 314 28 37 chr12 74707870 74708433 -69078022 + MLT1K LTR MaLR 2 559 -29 2175 92 41 3 chr12 74708465 74708759 -69077696 + AluSc SINE Alu 1 305 -4 1155 238 55 69 chr12 74708856 74709406 -69077049 - MER34 LTR ERV1 0 542 1 198 0 0 0 chr12 74709703 74709725 -69076730 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1890 126 35 18 chr12 74709727 74710013 -69076442 - AluSx SINE Alu -21 291 1 285 29 0 0 chr12 74711935 74711969 -69074486 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3746 97 16 23 chr12 74711992 74712550 -69073905 - MER41A LTR ERV1 0 554 1 277 295 55 38 chr12 74713234 74713417 -69073038 - L1ME1 LINE L1 -1922 4224 4039 2210 106 0 20 chr12 74713575 74713877 -69072578 - AluSc SINE Alu -13 296 1 809 301 58 58 chr12 74714010 74714425 -69072030 - L2 LINE L2 0 3313 2899 30 27 0 0 chr12 74714489 74714526 -69071929 + AT_rich Low_complexity Low_complexity 1 37 0 1765 198 108 8 chr12 74715216 74715615 -69070840 + MER74A LTR ERVL 1 439 -119 257 241 25 0 chr12 74715624 74715703 -69070752 + MER74B LTR ERVL 542 622 0 808 279 39 13 chr12 74716104 74716337 -69070118 + MIR SINE MIR 20 258 -4 1650 137 60 83 chr12 74716435 74716548 -69069907 - MER51B LTR ERV1 0 609 495 2513 82 0 0 chr12 74716548 74716851 -69069604 - AluSx SINE Alu -9 303 1 1650 137 60 83 chr12 74716851 74717206 -69069249 - MER51B LTR ERV1 -114 495 1 1624 166 60 14 chr12 74718151 74718434 -69068021 + AluJo SINE Alu 7 302 -10 718 179 39 39 chr12 74718789 74718968 -69067487 + MER105 DNA DNA 26 204 0 393 284 126 33 chr12 74719092 74719307 -69067148 + MIR SINE MIR 18 252 -10 307 231 94 44 chr12 74719994 74720154 -69066301 - L1ME4a LINE L1 -2 6119 5952 3457 144 44 81 chr12 74720157 74720958 -69065497 + MER4E LTR ERV1 1 771 -8 2390 149 20 0 chr12 74721097 74721492 -69064963 + MER57A LTR ERV1 1 403 0 2372 229 115 39 chr12 74721492 74721696 -69064759 + L1MC4a LINE L1 4969 4297 -1849 243 0 0 0 chr12 74721696 74721723 -69064732 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2372 229 115 39 chr12 74721723 74722789 -69063666 + L1MC4a LINE L1 4296 5279 -867 1326 199 77 22 chr12 74722812 74723178 -69063277 - MSTD LTR MaLR -8 388 3 3907 247 81 74 chr12 74723185 74724819 -69061636 - MSTD-int LTR MaLR -5 1646 1 1502 197 42 71 chr12 74724821 74725227 -69061228 - MSTD LTR MaLR -2 394 1 1285 256 51 30 chr12 74725227 74725775 -69060680 + MLT1E3 LTR MaLR 24 624 0 3325 248 120 35 chr12 74725813 74726356 -69060099 + L1MC4 LINE L1 6373 6869 -1173 1795 157 38 0 chr12 74726356 74726643 -69059812 + AluSx SINE Alu 1 298 -14 3325 248 120 35 chr12 74726643 74727633 -69058822 + L1MC4 LINE L1 6869 8036 -6 398 259 117 28 chr12 74727635 74727917 -69058538 - L1ME4a LINE L1 -258 5863 5557 10548 192 10 19 chr12 74728109 74730940 -69055515 - L1PA15 LINE L1 -14 6151 3348 2634 48 0 0 chr12 74730940 74731249 -69055206 + AluY SINE Alu 1 309 -2 10548 192 10 19 chr12 74731249 74731573 -69054882 - L1PA15 LINE L1 -2817 3348 3022 29 28 0 0 chr12 74731657 74731693 -69054762 + AT_rich Low_complexity Low_complexity 1 36 0 596 249 94 15 chr12 74732028 74732229 -69054226 - MLT1I LTR MaLR -192 217 1 2401 188 2 7 chr12 74732954 74733396 -69053059 - MLT1C LTR MaLR 0 467 28 234 318 134 11 chr12 74733617 74733736 -69052719 - MIR SINE MIR -71 137 6 183 162 0 0 chr12 74733763 74733800 -69052655 + (TAA)n Simple_repeat Simple_repeat 1 37 0 616 231 20 7 chr12 74734114 74734261 -69052194 - MIR SINE MIR -3 259 111 600 309 29 6 chr12 74734395 74734570 -69051885 + MIR SINE MIR 12 190 -72 1817 168 20 3 chr12 74734720 74735023 -69051432 + AluSx SINE Alu 1 308 -4 588 324 14 0 chr12 74736904 74737111 -69049344 - LTR16A LTR ERVL -76 374 165 26 0 0 0 chr12 74737791 74737817 -69048638 + AT_rich Low_complexity Low_complexity 1 26 0 4007 52 0 28 chr12 74737914 74738476 -69047979 - L1P3 LINE L1 -4255 1891 1352 2692 26 0 0 chr12 74738476 74738787 -69047668 + L1PA5 LINE L1 5837 6147 -7 519 291 131 0 chr12 74739317 74739523 -69046932 - MIR SINE MIR 0 262 30 543 258 5 59 chr12 74740722 74740908 -69045547 - LTR67 LTR ERVL -379 178 3 25 0 0 0 chr12 74741347 74741372 -69045083 + AT_rich Low_complexity Low_complexity 1 25 0 450 296 62 19 chr12 74741458 74741620 -69044835 - MIR SINE MIR -74 188 20 412 300 25 0 chr12 74741926 74742086 -69044369 - L1MC4a LINE L1 -1913 5895 5732 510 284 102 14 chr12 74742445 74742660 -69043795 - MIR SINE MIR -18 244 11 490 317 49 108 chr12 74742833 74743202 -69043253 + L2 LINE L2 2926 3272 0 617 345 70 42 chr12 74744040 74744397 -69042058 - L2 LINE L2 -22 3250 2884 308 303 76 7 chr12 74744501 74744646 -69041809 + LTR33A LTR ERVL 88 242 -281 476 328 59 24 chr12 74745128 74745381 -69041074 - MIR SINE MIR 0 262 1 198 71 0 0 chr12 74746046 74746074 -69040381 + (TAA)n Simple_repeat Simple_repeat 1 28 0 3549 279 94 30 chr12 74746806 74747520 -69038935 + L2 LINE L2 622 1289 -2025 323 0 0 45 chr12 74747520 74747564 -69038891 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 3549 279 94 30 chr12 74747564 74747759 -69038696 + L2 LINE L2 1289 1470 -1844 2656 36 0 0 chr12 74747759 74748064 -69038391 - AluY SINE Alu -6 305 1 3549 279 94 30 chr12 74748064 74748181 -69038274 + L2 LINE L2 1470 1578 -1736 2013 104 3 35 chr12 74748181 74748500 -69037955 + AluSx SINE Alu 4 313 0 3549 279 94 30 chr12 74748500 74748776 -69037679 + L2 LINE L2 1578 2011 -1303 883 125 0 22 chr12 74748789 74748925 -69037530 - AluSq/x SINE Alu -179 133 1 401 292 33 8 chr12 74748953 74749073 -69037382 + L2 LINE L2 3191 3313 0 * 624 298 47 39 chr12 74749070 74749328 -69037127 + MIR SINE MIR 3 262 0 22 80 0 0 chr12 74749447 74749497 -69036958 + AT_rich Low_complexity Low_complexity 1 50 0 687 271 131 22 chr12 74751195 74751693 -69034762 - HAL1 LINE L1 -121 2386 1835 809 211 75 9 chr12 74751729 74751957 -69034498 - HAL1 LINE L1 -741 1766 1524 443 228 26 9 chr12 74751962 74752076 -69034379 - HAL1 LINE L1 -1099 1408 1293 2501 65 0 3 chr12 74752146 74752454 -69034001 + AluY SINE Alu 1 307 -4 22 0 0 0 chr12 74752551 74752573 -69033882 + AT_rich Low_complexity Low_complexity 1 22 0 320 0 25 0 chr12 74753159 74753199 -69033256 + (TG)n Simple_repeat Simple_repeat 2 42 0 183 289 12 84 chr12 74753801 74753884 -69032571 - L2 LINE L2 0 3272 3196 4798 207 60 50 chr12 74754795 74757383 -69029072 - L1MDa LINE L1 -2885 3655 1025 209 304 76 0 chr12 74759744 74759836 -69026619 + MIR SINE MIR 125 223 -39 309 26 0 0 chr12 74760429 74760467 -69025988 + (TG)n Simple_repeat Simple_repeat 2 39 0 3477 138 13 99 chr12 74761171 74762017 -69024438 + LTR1 LTR ERV1 12 784 -1 401 230 9 26 chr12 74762017 74762127 -69024328 + LTR67 LTR ERVL 390 497 -60 183 42 0 0 chr12 74762282 74762306 -69024149 + (TG)n Simple_repeat Simple_repeat 2 25 0 607 232 4 7 chr12 74762306 74762587 -69023868 + (TA)n Simple_repeat Simple_repeat 1 279 0 3519 99 26 31 chr12 74763103 74763686 -69022769 - L1MA4A LINE L1 0 6303 5724 9060 158 30 92 chr12 74763691 74764741 -69021714 - L1MA4A LINE L1 -755 5391 4278 568 211 14 54 chr12 74764741 74764888 -69021567 - FLAM_A SINE Alu -1 141 1 9060 158 30 92 chr12 74764888 74766210 -69020245 - L1MA4A LINE L1 -1868 4278 3028 5302 108 16 7 chr12 74766228 74767049 -69019406 - L1MA2 LINE L1 -6 6298 5471 748 238 28 0 chr12 74767061 74767242 -69019213 - L1MA4A LINE L1 -3404 2742 2557 15147 172 13 14 chr12 74767246 74767968 -69018487 - L1M1 LINE L1 -743 6822 6100 2109 122 3 7 chr12 74767968 74768255 -69018200 - AluSx SINE Alu -26 286 1 15147 172 13 14 chr12 74768255 74771192 -69015263 - L1M1 LINE L1 -1465 6100 3217 * 40869 34 21 1 chr12 74771174 74777237 -69009218 - L1PA2 LINE L1 0 6155 15 17747 145 45 7 chr12 74777241 74778640 -69007815 - L1M1 LINE L1 -4346 3219 1874 270 0 0 0 chr12 74778640 74778670 -69007785 + (TC)n Simple_repeat Simple_repeat 2 31 0 17747 145 45 7 chr12 74778670 74780358 -69006097 - L1M1 LINE L1 -5691 1874 15 13763 185 21 36 chr12 74780353 74781714 -69004741 - L1 LINE L1 -3105 3743 2362 * 2105 147 3 0 chr12 74781714 74782014 -69004441 - AluSx SINE Alu -11 301 1 13763 185 21 36 chr12 74782014 74782071 -69004384 - L1 LINE L1 -4486 2362 2306 1957 196 64 7 chr12 74782071 74782480 -69003975 - MSTB1 LTR MaLR 0 432 1 13763 185 21 36 chr12 74782480 74784775 -69001680 - L1 LINE L1 -4542 2306 85 2142 132 7 3 chr12 74785511 74785821 -69000634 - AluSx SINE Alu -1 311 1 260 262 0 0 chr12 74786379 74786440 -69000015 + L2 LINE L2 3249 3309 -4 214 35 0 88 chr12 74787155 74787212 -68999243 + (TCC)n Simple_repeat Simple_repeat 2 53 0 316 266 147 83 chr12 74788787 74789039 -68997416 + MLT1K LTR MaLR 300 567 -21 821 234 48 30 chr12 74789251 74789482 -68996973 - MIR SINE MIR -27 235 1 393 219 95 19 chr12 74790083 74790188 -68996267 + L2 LINE L2 3201 3313 0 352 311 0 73 chr12 74790238 74790389 -68996066 + MIR SINE MIR 9 148 -114 2060 209 199 9 chr12 74790389 74791054 -68995401 + LTR50 LTR ERVL 1 791 -4 314 218 198 0 chr12 74791054 74791155 -68995300 + MIR SINE MIR 138 258 -4 632 246 11 17 chr12 74791408 74791583 -68994872 - MER104 DNA Tc2 -4 176 3 300 91 0 0 chr12 74791690 74791734 -68994721 + (CA)n Simple_repeat Simple_repeat 2 45 0 987 56 16 0 chr12 74792185 74792310 -68994145 - AluSg/x SINE Alu -12 300 174 198 0 0 0 chr12 74792431 74792453 -68994002 + (A)n Simple_repeat Simple_repeat 1 22 0 1035 142 0 0 chr12 74792702 74792883 -68993572 - AluSg/x SINE Alu 0 315 135 246 266 160 32 chr12 74793180 74793274 -68993181 - L2 LINE L2 -18 3295 3190 230 235 88 0 chr12 74793375 74793443 -68993012 + L2 LINE L2 2924 2997 -316 643 236 49 54 chr12 74793823 74794026 -68992429 - MER63A DNA MER1_type -4 206 5 1783 203 15 0 chr12 74794192 74794522 -68991933 - MER58B DNA MER1_type 0 341 7 1135 53 0 0 chr12 74794608 74794740 -68991715 + AluY SINE Alu 1 132 -179 3558 274 62 40 chr12 74794803 74795032 -68991423 - L2 LINE L2 -1376 1938 1715 2015 104 3 35 chr12 74795032 74795351 -68991104 - AluSx SINE Alu 0 313 4 3558 274 62 40 chr12 74795351 74795467 -68990988 - L2 LINE L2 -1599 1715 1603 2691 33 0 0 chr12 74795467 74795770 -68990685 + AluY SINE Alu 1 303 -8 3558 274 62 40 chr12 74795770 74796711 -68989744 - L2 LINE L2 -1711 1603 622 198 71 0 0 chr12 74797443 74797471 -68988984 + (TTA)n Simple_repeat Simple_repeat 1 28 0 474 324 59 24 chr12 74798136 74798389 -68988066 + MIR SINE MIR 1 262 0 353 303 76 7 chr12 74798871 74799016 -68987439 - LTR33A LTR ERVL -281 242 88 566 347 70 42 chr12 74799120 74799477 -68986978 + L2 LINE L2 2884 3250 -22 476 317 49 108 chr12 74800315 74800684 -68985771 - L2 LINE L2 0 3272 2926 492 285 105 10 chr12 74800857 74801057 -68985398 + MIR SINE MIR 11 229 -33 459 310 60 28 chr12 74801431 74801647 -68984808 + L1MC4a LINE L1 5732 5956 -165 452 296 62 19 chr12 74801897 74802059 -68984396 + MIR SINE MIR 20 188 -74 24 0 0 0 chr12 74802145 74802169 -68984286 + AT_rich Low_complexity Low_complexity 1 24 0 586 263 5 59 chr12 74802608 74802794 -68983661 + LTR67 LTR ERVL 3 178 -379 524 286 131 0 chr12 74803993 74804199 -68982256 + MIR SINE MIR 30 262 0 2842 29 0 0 chr12 74804729 74805040 -68981415 - L1PA5 LINE L1 -7 6147 5837 4298 50 0 28 chr12 74805040 74805602 -68980853 + L1P3 LINE L1 1667 2206 -4255 26 0 0 0 chr12 74805699 74805725 -68980730 + AT_rich Low_complexity Low_complexity 1 26 0 674 319 14 0 chr12 74806403 74806610 -68979845 + LTR16A LTR ERVL 165 374 -76 1824 165 20 3 chr12 74808491 74808794 -68977661 - AluSx SINE Alu -4 308 1 602 303 29 6 chr12 74808944 74809119 -68977336 - MIR SINE MIR -72 190 12 859 277 64 58 chr12 74809437 74809853 -68976602 + L1MEc LINE L1 1430 1842 -4554 1529 194 4 0 chr12 74809853 74810121 -68976334 + AluJo SINE Alu 5 273 -39 190 29 57 29 chr12 74810131 74810166 -68976289 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 859 277 64 58 chr12 74810166 74810492 -68975963 + L1MEc LINE L1 1850 2187 -4209 2290 178 70 11 chr12 74810518 74810957 -68975498 + Tigger7 DNA MER2_type 4 468 -2019 1498 117 36 0 chr12 74810957 74811179 -68975276 - MER30 DNA MER1_type 0 230 1 529 177 7 11 chr12 74811179 74811324 -68975131 + Tigger7 DNA MER2_type 461 2483 -8 1086 242 78 76 chr12 74811335 74811395 -68975060 + L1MEc LINE L1 2200 2258 -3957 1596 171 14 58 chr12 74811395 74811524 -68974931 + AluJo SINE Alu 1 134 -178 2202 113 0 0 chr12 74811524 74811816 -68974639 + AluSg SINE Alu 1 292 -18 1596 171 14 58 chr12 74811816 74811979 -68974476 + AluJo SINE Alu 134 280 -32 1086 242 78 76 chr12 74811979 74812364 -68974091 + L1MEc LINE L1 2258 2646 -3569 558 231 94 83 chr12 74812562 74812791 -68973664 + HAL1 LINE L1 2118 2354 -153 2388 72 13 13 chr12 74812791 74813095 -68973360 + AluY SINE Alu 1 304 -7 558 231 94 83 chr12 74813095 74813238 -68973217 + HAL1 LINE L1 2354 2494 -13 244 271 16 47 chr12 74813615 74813744 -68972711 + HAL1 LINE L1 1938 2062 -445 1210 100 199 79 chr12 74813982 74814223 -68972232 + AluSg SINE Alu 38 307 -3 253 139 236 0 chr12 74814801 74814873 -68971582 + L2 LINE L2 3039 3127 -186 884 195 7 0 chr12 74814937 74815086 -68971369 + MER97c DNA MER1_type? 2 151 -939 227 158 0 0 chr12 74815150 74815188 -68971267 + L2 LINE L2 3212 3249 -64 558 253 0 0 chr12 74815298 74815472 -68970983 + (TG)n Simple_repeat Simple_repeat 1 174 0 529 316 47 43 chr12 74815779 74815910 -68970545 - MIR SINE MIR -14 248 114 2316 94 0 25 chr12 74815910 74816228 -68970227 + AluSg SINE Alu 1 310 0 529 316 47 43 chr12 74816228 74816330 -68970125 - MIR SINE MIR -148 114 14 646 201 71 26 chr12 74817333 74817487 -68968968 - MER103 DNA DNA -4 162 2 216 0 0 0 chr12 74817772 74817796 -68968659 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 488 259 101 101 chr12 74818221 74818449 -68968006 + MIR SINE MIR 20 247 -15 2293 181 105 17 chr12 74818645 74819269 -68967186 + MER39 LTR ERV1 8 704 -3 444 19 0 0 chr12 74819633 74819686 -68966769 + (TG)n Simple_repeat Simple_repeat 2 54 0 2878 246 44 34 chr12 74819877 74820867 -68965588 + L1MDa LINE L1 1362 2361 -4179 * 16923 26 0 0 chr12 74820862 74823435 -68963020 + L1PA3 LINE L1 3442 6014 -141 854 124 8 0 chr12 74824124 74824253 -68962202 - FLAM_C SINE Alu 0 143 14 312 278 33 20 chr12 74825033 74825184 -68961271 + GA-rich Low_complexity Low_complexity 5 157 0 239 257 40 14 chr12 74825341 74825415 -68961040 - MIR SINE MIR 0 262 187 339 274 88 98 chr12 74825454 74825669 -68960786 + MIR SINE MIR 48 260 -2 551 294 37 12 chr12 74825685 74825848 -68960607 - MIR SINE MIR -76 186 20 480 167 0 49 chr12 74827149 74827251 -68959204 + L1MA9 LINE L1 6216 6312 0 183 364 57 0 chr12 74827419 74827507 -68958948 - MIR SINE MIR -80 182 90 308 258 125 16 chr12 74827579 74827707 -68958748 + MIR SINE MIR 66 207 -55 306 0 0 0 chr12 74827910 74827944 -68958511 + (TG)n Simple_repeat Simple_repeat 2 35 0 1316 169 88 27 chr12 74827946 74828084 -68958371 - AluJb SINE Alu -36 276 148 180 0 0 0 chr12 74828084 74828104 -68958351 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1316 169 88 27 chr12 74828104 74828225 -68958230 - AluJb SINE Alu -164 148 1 1865 150 6 105 chr12 74829788 74829981 -68956474 + MLT1B LTR MaLR 1 136 -260 2406 86 3 3 chr12 74829981 74830284 -68956171 + AluSp SINE Alu 1 303 -10 1865 150 6 105 chr12 74830284 74830520 -68955935 + MLT1B LTR MaLR 136 394 -2 395 273 154 14 chr12 74830952 74831095 -68955360 - L3 LINE CR1 -109 1468 1306 208 307 293 0 chr12 74831746 74831886 -68954569 - MIR SINE MIR -80 182 2 1795 60 21 34 chr12 74831940 74832173 -68954282 + MER30 DNA MER1_type 1 230 0 300 276 130 0 chr12 74832595 74832718 -68953737 + L2 LINE L2 3174 3312 -1 285 373 67 13 chr12 74834840 74834990 -68951465 + MIR3 SINE MIR 3 160 -48 2622 30 3 0 chr12 74835710 74836005 -68950450 - AluY SINE Alu -15 296 1 418 315 20 25 chr12 74836047 74836250 -68950205 - MIR SINE MIR -41 221 20 2607 37 0 0 chr12 74836595 74836894 -68949561 - AluY SINE Alu -12 299 1 308 186 29 118 chr12 74837400 74837502 -68948953 + MIR SINE MIR 100 192 -70 34 19 0 19 chr12 74837649 74837672 -68948783 + AT_rich Low_complexity Low_complexity 1 23 -28 1534 115 0 5 chr12 74837672 74837881 -68948574 + AluSg/x SINE Alu 81 288 -24 34 19 0 19 chr12 74837881 74837909 -68948546 + AT_rich Low_complexity Low_complexity 23 51 0 1044 128 82 15 chr12 74838336 74838532 -68947923 - L1MC2 LINE L1 0 6344 6136 1618 124 3 72 chr12 74838535 74838669 -68947786 - L1MC3 LINE L1 -183 7602 7460 306 67 0 0 chr12 74838669 74838714 -68947741 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2226 106 3 0 chr12 74838721 74839023 -68947432 - AluSp SINE Alu -10 303 1 1618 124 3 72 chr12 74839023 74839170 -68947285 - L1MC3 LINE L1 -331 7454 7333 1498 196 9 40 chr12 74839922 74840244 -68946211 + AluJo SINE Alu 1 312 0 2271 83 30 10 chr12 74840293 74840595 -68945860 - AluSq SINE Alu -5 308 1 390 315 144 18 chr12 74840753 74840975 -68945480 - MIR SINE MIR 0 262 13 1309 206 20 24 chr12 74841279 74841575 -68944880 - MER74A LTR ERVL -2 556 262 25602 38 0 0 chr12 74843086 74846806 -68939649 + L1PA3 LINE L1 2430 6155 0 1261 60 0 0 chr12 74846845 74846995 -68939460 + L1PA7 LINE L1 6001 6150 -4 323 178 0 27 chr12 74846995 74847068 -68939387 + L1MA4 LINE L1 6187 6257 -43 3825 110 70 10 chr12 74847101 74847728 -68938727 + Tigger3(Golem) DNA MER2_type 2365 3029 0 2649 39 3 0 chr12 74847814 74848119 -68938336 + AluY SINE Alu 1 306 -5 259 328 17 50 chr12 74848224 74848343 -68938112 - MIR SINE MIR -141 121 7 22 35 0 0 chr12 74848572 74848601 -68937854 + AT_rich Low_complexity Low_complexity 1 29 0 2061 124 0 36 chr12 74849038 74849345 -68937110 + AluSx SINE Alu 1 296 -16 898 286 58 38 chr12 74849854 74850302 -68936153 + L1ME1 LINE L1 5454 5921 -245 2128 125 3 0 chr12 74850665 74850960 -68935495 - AluSg SINE Alu -14 296 1 382 332 116 25 chr12 74852288 74852607 -68933848 - L1ME LINE L1 -318 5848 5501 247 222 19 0 chr12 74852801 74852855 -68933600 - L2 LINE L2 -2 3311 3257 509 235 8 8 chr12 74853007 74853126 -68933329 + L2 LINE L2 3193 3311 -2 254 306 48 97 chr12 74853482 74853677 -68932778 + MIR SINE MIR 13 195 -67 357 146 244 0 chr12 74853799 74853881 -68932574 + MIR SINE MIR 160 261 -1 521 223 27 0 chr12 74853889 74854001 -68932454 - MIR SINE MIR -114 148 34 213 39 0 0 chr12 74854205 74854231 -68932224 + (CA)n Simple_repeat Simple_repeat 2 27 0 339 253 149 0 chr12 74854785 74854872 -68931583 + L2 LINE L2 3193 3292 -21 1481 275 80 12 chr12 74854873 74855389 -68931066 + MER45C DNA AcHobo 1 551 -402 1759 87 16 8 chr12 74855448 74855690 -68930765 + L1MA2 LINE L1 6052 6295 -9 489 231 19 0 chr12 74855704 74855812 -68930643 + MER45C DNA AcHobo 844 953 0 407 263 64 152 chr12 74856443 74856850 -68929605 - MLT1J1 LTR MaLR 0 446 76 292 161 86 37 chr12 74856974 74857055 -68929400 + MIR SINE MIR 44 128 -134 242 143 0 24 chr12 74857056 74857098 -68929357 - MLT1J1 LTR MaLR -381 65 25 231 260 0 0 chr12 74857156 74857206 -68929249 + L2 LINE L2 3263 3312 -1 609 184 16 32 chr12 74858131 74858256 -68928199 - Charlie1 DNA MER1_type -1219 1542 1420 320 271 33 86 chr12 74858846 74858997 -68927458 - MIR SINE MIR -74 188 46 286 250 0 28 chr12 74859674 74859746 -68926709 - MIR SINE MIR -176 86 17 488 289 31 40 chr12 74859965 74860193 -68926262 - MLT1K LTR MaLR -36 552 327 617 297 22 6 chr12 74861207 74861389 -68925066 + MIR SINE MIR 12 196 -66 704 234 44 97 chr12 74861389 74861710 -68924745 + MER34B LTR ERV1 1 304 -261 444 196 98 112 chr12 74861737 74862013 -68924442 + MER34 LTR ERV1 271 542 0 462 237 21 0 chr12 74862272 74862369 -68924086 - MIR SINE MIR -94 168 70 595 315 73 18 chr12 74863437 74863842 -68922613 + MER115 DNA AcHobo 1 456 -237 250 254 18 18 chr12 74863835 74863890 -68922565 + MER115 DNA AcHobo 639 693 0 * 369 0 0 0 chr12 74865142 74865183 -68921272 + (TG)n Simple_repeat Simple_repeat 1 41 0 822 214 222 24 chr12 74865845 74866215 -68920240 + HAL1 LINE L1 2059 2501 -6 1756 161 32 0 chr12 74867588 74867873 -68918582 + AluJb SINE Alu 1 294 -18 520 281 222 0 chr12 74867912 74868115 -68918340 - MIR SINE MIR -7 255 8 221 333 50 8 chr12 74868289 74868409 -68918046 + L3 LINE CR1 647 771 -806 248 117 250 0 chr12 74868456 74868516 -68917939 + MER63 DNA MER1_type 1 701 -135 256 315 85 23 chr12 74868611 74868741 -68917714 + MIR SINE MIR 75 212 -50 573 245 164 0 chr12 74868758 74868917 -68917538 + MER5A DNA MER1_type 4 188 -1 2313 71 0 0 chr12 74869015 74869297 -68917158 + AluY SINE Alu 30 311 0 2575 104 38 11 chr12 74869513 74869878 -68916577 + THE1C LTR MaLR 1 375 0 2695 125 67 0 chr12 74869947 74870348 -68916107 - MSTA LTR MaLR 0 428 1 338 74 19 0 chr12 74870665 74870719 -68915736 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr12 74872117 74872138 -68914317 + AT_rich Low_complexity Low_complexity 1 21 0 319 334 123 15 chr12 74872695 74872876 -68913579 + MIR SINE MIR 2 200 -62 1719 272 51 25 chr12 74873670 74874218 -68912237 - MLT1K LTR MaLR -1 587 26 240 267 27 27 chr12 74874981 74875044 -68911411 + L2 LINE L2 3238 3303 -10 258 81 0 0 chr12 74875044 74875081 -68911374 + (TGAG)n Simple_repeat Simple_repeat 3 39 0 240 267 27 27 chr12 74875081 74875092 -68911363 + L2 LINE L2 3302 3312 -1 26 0 0 0 chr12 74875684 74875710 -68910745 + AT_rich Low_complexity Low_complexity 1 26 0 2714 29 3 10 chr12 74876023 74876336 -68910119 - AluY SINE Alu 0 311 1 418 315 20 25 chr12 74876378 74876581 -68909874 - MIR SINE MIR -41 221 20 2596 40 0 0 chr12 74876926 74877225 -68909230 - AluY SINE Alu -12 299 1 308 186 29 118 chr12 74877735 74877837 -68908618 + MIR SINE MIR 100 192 -70 34 19 0 19 chr12 74877984 74878007 -68908448 + AT_rich Low_complexity Low_complexity 1 23 -28 1534 115 0 5 chr12 74878007 74878216 -68908239 + AluSg/x SINE Alu 79 286 -24 34 19 0 19 chr12 74878216 74878244 -68908211 + AT_rich Low_complexity Low_complexity 23 51 0 1044 128 82 15 chr12 74878671 74878867 -68907588 - L1MC2 LINE L1 0 6344 6136 1618 124 3 72 chr12 74878870 74879004 -68907451 - L1MC3 LINE L1 -183 7602 7460 258 56 0 0 chr12 74879004 74879040 -68907415 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2226 106 3 0 chr12 74879047 74879349 -68907106 - AluSp SINE Alu -10 303 1 1618 124 3 72 chr12 74879349 74879496 -68906959 - L1MC3 LINE L1 -331 7454 7333 1498 196 9 40 chr12 74880248 74880570 -68905885 + AluJo SINE Alu 1 312 0 2271 83 30 10 chr12 74880619 74880921 -68905534 - AluSq SINE Alu -5 308 1 390 315 144 18 chr12 74881079 74881301 -68905154 - MIR SINE MIR 0 262 13 1309 206 20 24 chr12 74881605 74881901 -68904554 - MER74A LTR ERVL -2 556 262 854 124 8 0 chr12 74883486 74883615 -68902840 - FLAM_C SINE Alu 0 143 14 312 278 33 20 chr12 74884395 74884546 -68901909 + GA-rich Low_complexity Low_complexity 5 157 0 239 257 40 14 chr12 74884703 74884777 -68901678 - MIR SINE MIR 0 262 187 333 273 88 102 chr12 74884816 74885032 -68901423 + MIR SINE MIR 48 260 -2 551 294 37 12 chr12 74885048 74885211 -68901244 - MIR SINE MIR -76 186 20 480 167 0 49 chr12 74886512 74886614 -68899841 + L1MA9 LINE L1 6216 6312 0 183 364 57 0 chr12 74886782 74886870 -68899585 - MIR SINE MIR -80 182 90 308 258 125 16 chr12 74886942 74887070 -68899385 + MIR SINE MIR 66 207 -55 306 0 0 0 chr12 74887273 74887307 -68899148 + (TG)n Simple_repeat Simple_repeat 2 35 0 1316 169 88 27 chr12 74887309 74887447 -68899008 - AluJb SINE Alu -36 276 148 180 0 0 0 chr12 74887447 74887467 -68898988 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1316 169 88 27 chr12 74887467 74887588 -68898867 - AluJb SINE Alu -164 148 1 1865 150 6 105 chr12 74889151 74889344 -68897111 + MLT1B LTR MaLR 1 136 -260 2414 86 3 3 chr12 74889344 74889648 -68896807 + AluSp SINE Alu 1 304 -9 1865 150 6 105 chr12 74889648 74889884 -68896571 + MLT1B LTR MaLR 136 394 -2 395 273 154 14 chr12 74890316 74890459 -68895996 - L3 LINE CR1 -109 1468 1306 208 307 293 0 chr12 74891110 74891250 -68895205 - MIR SINE MIR -80 182 2 1801 60 22 30 chr12 74891304 74891536 -68894919 + MER30 DNA MER1_type 1 230 0 300 276 130 0 chr12 74891958 74892081 -68894374 + L2 LINE L2 3174 3312 -1 285 373 67 13 chr12 74894203 74894353 -68892102 + MIR3 SINE MIR 3 160 -48 2878 10 0 0 chr12 74895057 74895366 -68891089 - AluYa5 SINE Alu -2 309 1 3825 112 70 10 chr12 74895452 74896079 -68890376 - Tigger3(Golem) DNA MER2_type -1 3028 2364 43369 35 25 4 chr12 74896112 74896185 -68890270 - L1PA3 LINE L1 0 6155 6085 1261 60 0 0 chr12 74896185 74896335 -68890120 - L1PA7 LINE L1 -4 6150 6001 43369 35 25 4 chr12 74896335 74902362 -68884093 - L1PA3 LINE L1 -70 6085 31 647 151 65 14 chr12 74902362 74902501 -68883954 - Tigger3(Golem) DNA MER2_type -605 2424 2279 * 697 228 0 0 chr12 74902473 74902600 -68883855 - Tigger3(Golem) DNA MER2_type -2901 128 2 505 203 39 39 chr12 74903053 74903181 -68883274 + MIR SINE MIR 109 236 -26 662 311 62 54 chr12 74903325 74903711 -68882744 + MLT1I LTR MaLR 8 396 -13 29 78 0 0 chr12 74903746 74903810 -68882645 + AT_rich Low_complexity Low_complexity 1 64 0 261 0 0 0 chr12 74904964 74904993 -68881462 + (A)n Simple_repeat Simple_repeat 1 29 0 348 283 132 71 chr12 74905566 74905930 -68880525 + MARNA DNA Mariner 57 442 -144 3545 203 195 24 chr12 74906048 74906919 -68879536 + LTR28 LTR ERV1 1 1020 0 375 60 0 0 chr12 74908157 74908207 -68878248 + (CA)n Simple_repeat Simple_repeat 2 51 0 188 156 89 0 chr12 74909120 74909165 -68877290 - L2 LINE L2 -4 3309 3261 237 236 0 42 chr12 74909968 74910040 -68876415 + MIR SINE MIR 96 164 -98 294 256 72 88 chr12 74910078 74910203 -68876252 - MER5A DNA MER1_type -1 188 66 1672 195 24 0 chr12 74910235 74910533 -68875922 - AluJb SINE Alu -7 305 1 1131 212 19 48 chr12 74911113 74911382 -68875073 - MIR SINE MIR 0 262 2 193 344 84 23 chr12 74911519 74911650 -68874805 + L2 LINE L2 2897 3035 -237 391 277 107 0 chr12 74911967 74912079 -68874376 - L2 LINE L2 0 3313 3190 335 257 167 28 chr12 74912259 74912403 -68874052 - MIR SINE MIR -14 248 85 2467 87 0 0 chr12 74913825 74914135 -68872320 + AluSq SINE Alu 1 310 -3 923 105 0 8 chr12 74914825 74914958 -68871497 + AluSp/q SINE Alu 182 313 0 353 284 9 28 chr12 74915094 74915203 -68871252 + MIR SINE MIR 47 153 -109 257 346 122 23 chr12 74915796 74916140 -68870315 + L2 LINE L2 2874 3251 -21 484 252 19 0 chr12 74916395 74916502 -68869953 + L1MC5 LINE L1 5547 5655 -2153 1367 267 79 62 chr12 74916521 74916856 -68869599 + L1MC5 LINE L1 5716 6044 -1917 2503 78 0 0 chr12 74916856 74917162 -68869293 - AluY SINE Alu -5 306 1 1367 267 79 62 chr12 74917162 74918246 -68868209 + L1MC5 LINE L1 6044 7228 -733 876 200 49 69 chr12 74918275 74918625 -68867830 + L1MC5 LINE L1 7584 7926 -35 826 143 0 8 chr12 74919727 74919853 -68866602 + FLAM_C SINE Alu 1 125 -18 353 322 13 20 chr12 74920308 74920460 -68865995 + L2 LINE L2 2837 2987 -285 195 42 0 0 chr12 74920709 74920733 -68865722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 194 200 200 33 chr12 74921843 74921933 -68864522 + L2 LINE L2 3200 3304 -9 547 273 25 50 chr12 74921935 74922133 -68864322 - L2 LINE L2 -7 3306 3114 399 284 70 25 chr12 74922266 74922538 -68863917 + L1MC/D LINE L1 5295 5602 -751 518 234 72 30 chr12 74922874 74923041 -68863414 - Charlie8 DNA MER1_type -2243 174 1 311 264 99 33 chr12 74923299 74923420 -68863035 - L2 LINE L2 -3 3310 3182 207 0 0 0 chr12 74923663 74923686 -68862769 + (A)n Simple_repeat Simple_repeat 1 23 0 224 293 80 0 chr12 74923733 74923808 -68862647 + MER91A DNA MER1_type 4 84 -112 287 298 181 21 chr12 74923898 74924143 -68862312 - L2 LINE L2 -241 3072 2794 202 363 67 30 chr12 74924819 74924954 -68861501 + L2 LINE L2 3096 3235 -37 4976 201 23 10 chr12 74926888 74928780 -68857675 + L1MB3 LINE L1 4269 6181 -2 326 236 9 85 chr12 74929052 74929158 -68857297 + MER5A DNA MER1_type 9 106 -83 225 132 0 0 chr12 74930398 74930436 -68856019 + (T)n Simple_repeat Simple_repeat 1 38 0 187 339 34 0 chr12 74931922 74931981 -68854474 - L2 LINE L2 -5 3267 3207 2461 61 0 26 chr12 74932001 74932314 -68854141 + L1PA13 LINE L1 5854 6158 -5 398 349 104 20 chr12 74932523 74932916 -68853539 + L2 LINE L2 2884 3309 -4 397 254 164 0 chr12 74933185 74933295 -68853160 - L2 LINE L2 -1 3312 3185 236 318 24 24 chr12 74933307 74933392 -68853063 + L2 LINE L2 3187 3271 -1 27 87 0 0 chr12 74935308 74935377 -68851078 + AT_rich Low_complexity Low_complexity 1 69 0 180 406 53 8 chr12 74935472 74935605 -68850850 - MIR3 SINE MIR -68 140 2 274 309 74 9 chr12 74936504 74936627 -68849828 - MIR SINE MIR -64 144 30 376 302 70 8 chr12 74938008 74938137 -68848318 - MIR SINE MIR -76 186 50 2146 128 0 16 chr12 74938871 74939183 -68847272 + AluSx SINE Alu 1 307 -5 462 184 85 53 chr12 74939911 74940087 -68846368 + MIR SINE MIR 42 220 -42 265 179 71 18 chr12 74940206 74940262 -68846193 + MER91C DNA MER1_type 36 94 -46 774 207 107 6 chr12 74940481 74940650 -68845805 + MER5A DNA MER1_type 3 188 -1 183 216 14 81 chr12 74943174 74943248 -68843207 - L2 LINE L2 -2 3270 3202 291 276 201 17 chr12 74943296 74943470 -68842985 + MIR SINE MIR 28 233 -29 1127 161 101 0 chr12 74943479 74943678 -68842777 - MER20 DNA MER1_type 0 219 1 636 330 0 23 chr12 74944769 74944987 -68841468 - MIR SINE MIR -32 230 18 909 191 55 33 chr12 74944989 74945172 -68841283 - MER5A DNA MER1_type 0 189 3 2219 114 0 3 chr12 74946769 74947077 -68839378 + AluSq SINE Alu 1 307 -6 36 23 0 0 chr12 74947125 74947168 -68839287 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 74947328 74947350 -68839105 + AT_rich Low_complexity Low_complexity 1 22 0 209 267 13 147 chr12 74947392 74947542 -68838913 - L2 LINE L2 -44 3228 3099 569 232 6 54 chr12 74947615 74947783 -68838672 - L2 LINE L2 0 3313 3154 312 200 120 0 chr12 74948003 74948103 -68838352 + L1ME LINE L1 5694 5805 -316 971 205 0 0 chr12 74948494 74948665 -68837790 + AluJb SINE Alu 137 307 -5 276 290 91 56 chr12 74948746 74948872 -68837583 + MIR SINE MIR 30 160 -48 340 229 33 49 chr12 74948912 74949034 -68837421 + L1M4 LINE L1 4350 4469 -1677 1419 189 85 0 chr12 74949092 74949507 -68836948 + AluJb SINE Alu 1 437 0 612 265 31 19 chr12 74949514 74949857 -68836598 + MLT1G1 LTR MaLR 217 595 0 1999 126 7 10 chr12 74950325 74950619 -68835836 - AluSx SINE Alu -19 293 1 1219 126 57 48 chr12 74951148 74951202 -68835253 + MER46A DNA MER2_type 5 57 -2674 2143 92 7 10 chr12 74951202 74951496 -68834959 - AluSx SINE Alu -19 293 1 1219 126 57 48 chr12 74951496 74951671 -68834784 + MER46A DNA MER2_type 57 236 0 466 342 94 17 chr12 74954512 74954863 -68831592 + MLT1K LTR MaLR 86 463 -125 255 287 0 32 chr12 74955065 74955159 -68831296 + MIR SINE MIR 73 163 -99 312 188 14 0 chr12 74955277 74955346 -68831109 - MER116 DNA Mariner -8 72 3 23 0 0 0 chr12 74955936 74955959 -68830496 + AT_rich Low_complexity Low_complexity 1 23 0 755 295 26 8 chr12 74956061 74956295 -68830160 + MIR SINE MIR 16 253 -9 1268 258 54 56 chr12 74957014 74957177 -68829278 - L1ME3A LINE L1 -132 6038 5876 1805 151 3 51 chr12 74957177 74957489 -68828966 - AluJo SINE Alu -15 297 1 1268 258 54 56 chr12 74957489 74957806 -68828649 - L1ME3A LINE L1 -294 5876 5559 418 246 45 0 chr12 74957806 74957916 -68828539 - MIR SINE MIR -97 165 51 201 178 0 0 chr12 74958729 74958774 -68827681 + T-rich Low_complexity Low_complexity 1 45 0 721 176 8 0 chr12 74959801 74959920 -68826535 + AluJb SINE Alu 1 120 -192 255 61 0 0 chr12 74959920 74959953 -68826502 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr12 74960106 74960130 -68826325 + (A)n Simple_repeat Simple_repeat 1 24 0 470 204 231 7 chr12 74960291 74960438 -68826017 + MER5A DNA MER1_type 4 183 -6 235 188 21 0 chr12 74961227 74961275 -68825180 + A-rich Low_complexity Low_complexity 5 53 0 933 243 9 9 chr12 74962245 74962459 -68823996 + MIR SINE MIR 49 262 0 563 183 0 8 chr12 74962468 74962594 -68823861 + L1MA4 LINE L1 6169 6293 -7 2325 117 0 0 chr12 74962821 74963121 -68823334 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 74963123 74963146 -68823309 + AT_rich Low_complexity Low_complexity 1 23 0 481 302 123 67 chr12 74963391 74963759 -68822696 + HAL1 LINE L1 2 348 -2159 2422 74 0 0 chr12 74963759 74964070 -68822385 + AluY SINE Alu 1 311 0 481 302 123 67 chr12 74964070 74964561 -68821894 + HAL1 LINE L1 348 909 -1598 1506 249 60 47 chr12 74964618 74965217 -68821238 + L1ME1 LINE L1 155 761 -5444 1378 148 112 26 chr12 74965231 74965535 -68820920 - MER1B DNA MER1_type 0 339 10 496 246 103 61 chr12 74965548 74965926 -68820529 + L1ME1 LINE L1 778 1171 -5047 396 233 93 72 chr12 74966263 74966450 -68820005 + L1ME1 LINE L1 2230 2424 -3972 3262 94 6 9 chr12 74966450 74966917 -68819538 + L1PA11 LINE L1 5709 6174 0 396 233 93 72 chr12 74966917 74966965 -68819490 + L1ME1 LINE L1 2424 2470 -3926 * 2081 44 22 0 chr12 74966948 74967221 -68819234 - L1P1 LINE L1 -530 5625 5347 8362 236 53 25 chr12 74967230 74970907 -68815548 + L1ME1 LINE L1 2450 6233 -2 1095 251 68 33 chr12 74970933 74971420 -68815035 + L1M4 LINE L1 3133 3636 -2510 202 308 176 0 chr12 74971630 74971721 -68814734 + L2 LINE L2 3154 3260 -12 198 71 0 0 chr12 74971723 74971751 -68814704 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 561 150 10 0 chr12 74972046 74972146 -68814309 + L1PB4 LINE L1 6055 6155 -1 2126 128 0 13 chr12 74972160 74972464 -68813991 + AluSx SINE Alu 1 300 -12 372 43 0 0 chr12 74972465 74972511 -68813944 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 8048 40 5 245 chr12 74972511 74974263 -68812192 + SVA Other Other 57 1386 0 23 0 0 0 chr12 74974263 74974286 -68812169 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 74974325 74974358 -68812097 + AT_rich Low_complexity Low_complexity 1 33 0 1663 191 3 14 chr12 74974886 74975180 -68811275 + AluJb SINE Alu 1 291 -21 847 198 115 0 chr12 74975188 74975405 -68811050 - L1MC4a LINE L1 -435 7373 7132 618 193 26 0 chr12 74975490 74975604 -68810851 - L1PA16 LINE L1 -5 6161 6045 259 258 0 0 chr12 74975615 74975677 -68810778 - L1MD3 LINE L1 -221 7774 7713 * 452 256 8 23 chr12 74975663 74975795 -68810660 - L1MC4 LINE L1 -311 7564 7371 1595 271 31 58 chr12 74975835 74976561 -68809894 + HAL1b LINE L1 464 1165 -183 2186 138 42 20 chr12 74976561 74976917 -68809538 - THE1B LTR MaLR 0 364 1 1595 271 31 58 chr12 74976917 74977039 -68809416 + HAL1b LINE L1 1165 1289 -59 245 338 13 0 chr12 74977336 74977487 -68808968 + L1P LINE L1 3634 3786 -2360 2116 142 3 0 chr12 74977676 74977985 -68808470 + AluSx SINE Alu 1 310 -2 251 247 172 23 chr12 74978164 74978553 -68807902 + L1M4 LINE L1 4206 4652 -1494 232 333 0 0 chr12 74979094 74979145 -68807310 + L2 LINE L2 3160 3210 -62 231 242 219 0 chr12 74979274 74979402 -68807053 + L1ME4a LINE L1 5961 6116 -5 7491 24 0 9 chr12 74979768 74980659 -68805796 + L1PA3 LINE L1 5273 6155 0 243 0 0 0 chr12 74980714 74980741 -68805714 + (A)n Simple_repeat Simple_repeat 1 27 0 446 268 41 0 chr12 74981491 74981614 -68804841 - L2 LINE L2 -1 3312 3185 356 286 105 0 chr12 74981891 74982024 -68804431 - L2 LINE L2 -562 2752 2606 593 249 85 19 chr12 74982044 74982249 -68804206 - MIR SINE MIR -25 237 22 214 276 17 0 chr12 74983632 74983690 -68802765 + GA-rich Low_complexity Low_complexity 1 59 0 252 358 71 58 chr12 74983924 74984150 -68802305 - L2 LINE L2 -109 3163 2935 245 367 53 40 chr12 74984303 74984453 -68802002 + L2 LINE L2 3121 3272 0 376 349 33 0 chr12 74984511 74984663 -68801792 - L2 LINE L2 -541 2773 2617 731 267 36 44 chr12 74984756 74984981 -68801474 + MIR SINE MIR 8 230 -32 763 185 98 73 chr12 74985271 74985476 -68800979 - MER63A DNA MER1_type 0 210 1 296 368 46 0 chr12 74986035 74986209 -68800246 + L3 LINE CR1 267 448 -1129 207 292 139 0 chr12 74986218 74986290 -68800165 - L2 LINE L2 0 3313 3232 525 350 153 25 chr12 74986429 74987068 -68799387 + L3 LINE CR1 475 1195 -382 590 230 64 32 chr12 74987091 74987278 -68799177 - MIR SINE MIR -14 248 56 268 309 0 0 chr12 74988461 74988529 -68797926 + GA-rich Low_complexity Low_complexity 3 70 0 292 274 105 0 chr12 74988868 74988963 -68797492 - L2 LINE L2 0 3313 3209 340 294 66 7 chr12 74989223 74989359 -68797096 + MIR SINE MIR 100 243 -19 3631 107 112 47 chr12 74990415 74991136 -68795319 + LTR1 LTR ERV1 18 785 0 359 235 206 7 chr12 74992278 74992414 -68794041 - MIR SINE MIR -53 209 47 627 273 76 25 chr12 74993102 74993340 -68793115 + MIR SINE MIR 1 250 -12 1216 280 133 30 chr12 74993393 74993863 -68792592 + L2 LINE L2 1828 2249 -1064 387 0 0 0 chr12 74993863 74993906 -68792549 + (CA)n Simple_repeat Simple_repeat 2 44 0 1216 280 133 30 chr12 74993906 74994542 -68791913 + L2 LINE L2 2249 3306 -7 2559 156 11 15 chr12 74994542 74995005 -68791450 + MER65C LTR ERV1 1 461 0 244 246 0 15 chr12 74995045 74995110 -68791345 + MIR SINE MIR 69 132 -130 515 314 47 0 chr12 74995225 74995397 -68791058 - MIR SINE MIR -80 182 3 1122 195 67 0 chr12 74995453 74995663 -68790792 - MER58A DNA MER1_type 0 224 1 213 145 40 0 chr12 74996352 74996428 -68790027 + (TA)n Simple_repeat Simple_repeat 1 79 0 253 191 29 0 chr12 74996524 74996592 -68789863 + (TA)n Simple_repeat Simple_repeat 2 71 0 209 206 48 63 chr12 74997271 74997334 -68789121 - L2 LINE L2 -1 3312 3251 351 242 55 11 chr12 74998137 74998228 -68788227 + MIR SINE MIR 165 259 -3 1315 193 82 31 chr12 74998317 74998705 -68787750 - LTR37A LTR ERV1 -1 425 18 388 259 72 67 chr12 74998822 74999227 -68787228 - L1ME4a LINE L1 -8 6113 5707 21 36 0 0 chr12 74999551 74999579 -68786876 + AT_rich Low_complexity Low_complexity 1 28 0 330 200 29 0 chr12 74999804 74999874 -68786581 + tRNA-Cys-TGC tRNA tRNA 1 72 -3 194 114 114 0 chr12 74999965 75000000 -68786455 + L2 LINE L2 3267 3305 -8 450 94 0 0 chr12 75002287 75002351 -68784104 + (TA)n Simple_repeat Simple_repeat 2 65 0 190 148 0 33 chr12 75002418 75002479 -68783976 + (TA)n Simple_repeat Simple_repeat 2 60 0 1701 111 54 33 chr12 75002491 75002824 -68783631 - L1MA4 LINE L1 -6 6294 5955 195 42 0 0 chr12 75002841 75002865 -68783590 + (TA)n Simple_repeat Simple_repeat 2 25 0 612 278 127 30 chr12 75002878 75003248 -68783207 - L1MC4 LINE L1 -149 7893 7488 214 305 89 84 chr12 75003426 75003616 -68782839 - L2 LINE L2 -38 3234 3044 1281 111 23 32 chr12 75003670 75003887 -68782568 - L1MA5A LINE L1 0 6297 6083 1627 132 58 18 chr12 75004035 75004362 -68782093 - L1MA4 LINE L1 -6 6294 5955 478 246 49 89 chr12 75005016 75005219 -68781236 - Charlie8 DNA MER1_type -2141 276 82 2259 104 3 0 chr12 75005977 75006276 -68780179 - AluSp SINE Alu -13 300 1 1074 264 63 18 chr12 75006292 75006625 -68779830 - L2 LINE L2 -540 2774 2427 460 263 224 26 chr12 75007239 75007578 -68778877 + L2 LINE L2 2055 2460 -854 200 160 13 67 chr12 75057880 75057955 -68728500 + (CACAT)n Simple_repeat Simple_repeat 3 73 0 738 147 26 0 chr12 75061784 75061900 -68724555 + FLAM_A SINE Alu 2 120 -13 454 274 67 43 chr12 75062335 75062663 -68723792 + HAL1b LINE L1 68 403 -945 446 284 82 5 chr12 75062800 75063008 -68723447 + HAL1b LINE L1 616 839 -509 23 33 0 0 chr12 75063731 75063761 -68722694 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 75063901 75063926 -68722529 + AT_rich Low_complexity Low_complexity 1 25 0 321 261 22 14 chr12 75063940 75064078 -68722377 - L1MC5 LINE L1 -51 7910 7772 784 242 31 0 chr12 75064099 75064322 -68722133 - L1ME1 LINE L1 -5 6161 5932 27 0 0 0 chr12 75064440 75064467 -68721988 + AT_rich Low_complexity Low_complexity 1 27 0 2351 100 0 7 chr12 75065926 75066236 -68720219 - AluSx SINE Alu -4 308 1 420 291 105 65 chr12 75067364 75068031 -68718424 + HAL1b LINE L1 16 709 -639 2274 263 48 11 chr12 75068040 75068679 -68717776 + L2 LINE L2 250 912 -2402 2947 67 42 0 chr12 75068680 75069064 -68717391 + MLT2A1 LTR ERVL 2 405 -39 225 83 0 0 chr12 75069064 75069100 -68717355 + (TA)n Simple_repeat Simple_repeat 1 36 0 2947 67 42 0 chr12 75069100 75069116 -68717339 + MLT2A1 LTR ERVL 405 419 -25 22 0 0 0 chr12 75069116 75069138 -68717317 + AT_rich Low_complexity Low_complexity 1 22 0 392 317 65 16 chr12 75069144 75069330 -68717125 - LTR33 LTR ERVL -184 337 143 359 280 0 16 chr12 75071153 75071278 -68715177 + L1MC4a LINE L1 5724 5846 -1962 445 223 0 39 chr12 75072105 75072208 -68714247 - L2 LINE L2 -33 3280 3182 367 279 67 47 chr12 75072544 75072714 -68713741 - MIR SINE MIR -51 211 36 411 146 62 10 chr12 75073158 75073254 -68713201 + MER94 DNA DNA 1 101 -33 24 0 0 0 chr12 75073286 75073310 -68713145 + AT_rich Low_complexity Low_complexity 1 24 0 374 181 75 23 chr12 75073656 75073789 -68712666 - L1ME4a LINE L1 0 6121 5982 537 298 90 8 chr12 75073824 75074180 -68712275 - L1ME4a LINE L1 -201 5920 5536 2331 85 27 0 chr12 75074430 75074723 -68711732 + AluSx SINE Alu 1 301 -11 334 273 11 17 chr12 75074975 75075081 -68711374 - MIR SINE MIR -71 137 51 820 259 15 34 chr12 75075336 75075602 -68710853 + MIR SINE MIR 2 262 0 324 217 11 54 chr12 75075617 75075709 -68710746 - MIR SINE MIR -57 205 118 566 213 0 21 chr12 75076646 75076787 -68709668 + L1MA4 LINE L1 6155 6292 -8 464 270 88 13 chr12 75077455 75077614 -68708841 + L2 LINE L2 3101 3271 -1 281 239 57 44 chr12 75078380 75078539 -68707916 + HAL1b LINE L1 1188 1348 0 938 244 146 7 chr12 75079170 75079445 -68707010 - Charlie2 DNA MER1_type -2469 313 1 187 302 19 19 chr12 75079446 75079499 -68706956 - MIR3 SINE MIR -49 159 107 377 257 57 38 chr12 75079544 75079649 -68706806 + MIR3 SINE MIR 59 165 -43 1084 278 57 8 chr12 75079653 75080005 -68706450 + LTR33 LTR ERVL 4 372 -149 4060 206 72 51 chr12 75080278 75080972 -68705483 - L1MB5 LINE L1 0 7808 7130 1811 52 9 13 chr12 75080972 75081203 -68705252 - AluY SINE Alu -2 309 80 4060 206 72 51 chr12 75081203 75082121 -68704334 - L1MB5 LINE L1 -678 7130 6111 2062 144 0 10 chr12 75082121 75082433 -68704022 + AluSx SINE Alu 1 309 -3 4060 206 72 51 chr12 75082433 75083190 -68703265 - L1MB5 LINE L1 -1697 6111 5371 1296 223 10 0 chr12 75083205 75083506 -68702949 - L1MC4a LINE L1 -1923 5885 5582 2121 134 0 3 chr12 75084747 75085053 -68701402 + AluSq SINE Alu 2 306 -7 453 324 7 14 chr12 75085108 75085250 -68701205 - L2 LINE L2 0 3313 3173 205 174 232 14 chr12 75085271 75085340 -68701115 - L2 LINE L2 -5 3308 3225 1934 235 86 80 chr12 75085498 75086514 -68699941 - L2 LINE L2 -84 3229 2225 31 82 0 0 chr12 75086520 75086593 -68699862 + AT_rich Low_complexity Low_complexity 1 73 0 2484 65 0 0 chr12 75086742 75087048 -68699407 + AluY SINE Alu 1 306 -5 2166 107 7 7 chr12 75088146 75088446 -68698009 - AluSg SINE Alu -8 302 3 408 114 11 23 chr12 75088703 75088791 -68697664 + (TCC)n Simple_repeat Simple_repeat 1 87 0 189 0 0 0 chr12 75088843 75088864 -68697591 + (CCCA)n Simple_repeat Simple_repeat 2 22 0 189 206 44 29 chr12 75089970 75090038 -68696417 - MIR SINE MIR -65 197 129 2137 131 0 0 chr12 75090766 75091048 -68695407 + AluSg SINE Alu 1 285 -25 965 116 7 0 chr12 75091048 75091203 -68695252 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2137 131 0 0 chr12 75091203 75091218 -68695237 + AluSg SINE Alu 284 298 -12 2267 86 3 7 chr12 75091224 75091525 -68694930 + AluSp SINE Alu 2 301 -12 2199 102 7 3 chr12 75091567 75091861 -68694594 + AluSx SINE Alu 1 295 -17 200 111 28 0 chr12 75091937 75091973 -68694482 + (CA)n Simple_repeat Simple_repeat 2 38 0 2182 113 0 3 chr12 75092069 75092370 -68694085 - AluSx SINE Alu -12 300 1 541 252 54 59 chr12 75096237 75096459 -68689996 - MIR SINE MIR -28 234 14 29 60 0 0 chr12 75097355 75097405 -68689050 + AT_rich Low_complexity Low_complexity 1 50 0 2337 82 3 22 chr12 75098526 75098844 -68687611 + AluSx SINE Alu 1 312 0 211 182 0 0 chr12 75098844 75098877 -68687578 + polypurine Low_complexity Low_complexity 2 34 0 309 215 187 28 chr12 75098882 75098989 -68687466 - L2 LINE L2 -12 3260 3137 1746 124 11 11 chr12 75099067 75099333 -68687122 + AluSx SINE Alu 38 303 -9 332 340 47 9 chr12 75099427 75099533 -68686922 - MIR SINE MIR -78 130 21 218 200 0 0 chr12 75099869 75099919 -68686536 + T-rich Low_complexity Low_complexity 3 52 0 2425 137 89 14 chr12 75099954 75100294 -68686161 - MER65C LTR ERV1 -4 457 77 2202 87 7 3 chr12 75100294 75100580 -68685875 - AluSc SINE Alu -22 287 1 2425 137 89 14 chr12 75100580 75100664 -68685791 - MER65C LTR ERV1 -384 77 1 770 230 68 77 chr12 75100665 75100900 -68685555 + MIR SINE MIR 15 247 -15 354 268 0 146 chr12 75101894 75102107 -68684348 + MER5A DNA MER1_type 8 189 0 477 342 5 21 chr12 75103133 75103320 -68683135 - MER5A DNA MER1_type -5 184 1 411 321 0 0 chr12 75104091 75104200 -68682255 - L2 LINE L2 -1 3312 3204 1626 169 0 97 chr12 75104413 75104744 -68681711 - AluJo SINE Alu -3 299 1 2234 120 10 0 chr12 75105271 75105612 -68680843 - AluSx SINE Alu 0 344 1 349 249 61 111 chr12 75106284 75106465 -68679990 + MER5A DNA MER1_type 1 172 -6 711 261 6 17 chr12 75106488 75106668 -68679787 - MER5B DNA MER1_type 0 178 1 296 282 13 0 chr12 75106969 75107047 -68679408 - MER112 DNA MER1_type -5 255 177 534 79 0 0 chr12 75107050 75107126 -68679329 + (AATAG)n Simple_repeat Simple_repeat 1 76 0 1843 148 173 26 chr12 75108267 75108619 -68677836 - MER4A LTR ERV1 0 664 261 621 104 21 10 chr12 75108619 75108715 -68677740 - MER4A LTR ERV1 -567 97 1 1835 137 3 23 chr12 75109228 75109534 -68676921 + AluJb SINE Alu 1 300 -12 210 364 0 13 chr12 75109821 75109898 -68676557 - MER5A DNA MER1_type 0 189 114 517 196 12 127 chr12 75109899 75109999 -68676456 + MER5B DNA MER1_type 26 99 -79 2422 85 0 3 chr12 75109999 75110305 -68676150 - AluSx SINE Alu -2 310 6 517 196 12 127 chr12 75110305 75110377 -68676078 + MER5B DNA MER1_type 99 178 0 273 282 35 63 chr12 75110377 75110489 -68675966 - MER5A DNA MER1_type -79 110 3 849 134 8 22 chr12 75110639 75110773 -68675682 - FLAM_C SINE Alu -10 133 2 267 225 62 127 chr12 75111057 75111301 -68675154 + L1MC4a LINE L1 5697 5924 -1884 2419 70 3 0 chr12 75111498 75111799 -68674656 + AluY SINE Alu 1 302 -9 256 191 0 0 chr12 75111848 75111890 -68674565 + L2 LINE L2 3226 3267 -5 473 229 65 59 chr12 75112005 75112158 -68674297 - MIR SINE MIR -19 243 90 342 115 0 0 chr12 75112171 75112223 -68674232 + (CA)n Simple_repeat Simple_repeat 2 53 0 2105 104 7 0 chr12 75112249 75112529 -68673926 - AluSx SINE Alu -30 282 1 224 305 122 46 chr12 75112796 75112927 -68673528 - MIR SINE MIR -31 231 91 217 225 0 0 chr12 75112996 75113036 -68673419 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 316 63 25 chr12 75113545 75113703 -68672752 + MER117 DNA MER1_type 34 197 0 21 0 0 0 chr12 75113859 75113880 -68672575 + AT_rich Low_complexity Low_complexity 1 21 0 1788 176 0 14 chr12 75114314 75114610 -68671845 - AluJo SINE Alu -20 292 1 22 0 0 0 chr12 75114615 75114637 -68671818 + AT_rich Low_complexity Low_complexity 1 22 0 234 296 25 25 chr12 75114664 75114745 -68671710 + MARNA DNA Mariner 122 202 -384 1088 139 41 6 chr12 75115670 75115842 -68670613 - AluSg/x SINE Alu -1 311 134 1800 141 24 10 chr12 75116697 75116988 -68669467 + AluJb SINE Alu 4 298 -14 1360 78 0 0 chr12 75117048 75117215 -68669240 + AluSp SINE Alu 137 303 -10 721 158 30 61 chr12 75117666 75117831 -68668624 + MER5B DNA MER1_type 19 178 0 2053 132 0 19 chr12 75118364 75118674 -68667781 + AluSx SINE Alu 1 304 -8 436 377 19 6 chr12 75120220 75120379 -68666076 - MER91A DNA MER1_type -35 161 1 1123 151 18 78 chr12 75120712 75120931 -68665524 + AluJo SINE Alu 85 290 -22 261 0 0 0 chr12 75121312 75121341 -68665114 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1363 320 61 18 chr12 75122948 75123508 -68662947 - MLT1K LTR MaLR -1 587 4 218 323 63 31 chr12 75124231 75124358 -68662097 - L2 LINE L2 -1 3312 3182 2109 101 7 36 chr12 75124512 75124818 -68661637 + AluSx SINE Alu 4 300 -12 248 322 171 51 chr12 75124939 75125231 -68661224 - L2 LINE L2 -450 2864 2538 21 0 0 0 chr12 75125748 75125769 -68660686 + AT_rich Low_complexity Low_complexity 1 21 0 1931 157 7 0 chr12 75125787 75126081 -68660374 + AluSx SINE Alu 1 296 -16 380 221 87 54 chr12 75126094 75126243 -68660212 - L1MC5 LINE L1 -65 7896 7743 2023 101 0 4 chr12 75126473 75126741 -68659714 - AluSx SINE Alu -4 308 42 224 76 91 15 chr12 75127372 75127438 -68659017 + (TA)n Simple_repeat Simple_repeat 1 71 0 1724 157 29 10 chr12 75128242 75128548 -68657907 - AluJo SINE Alu 0 312 1 341 304 18 23 chr12 75131889 75132075 -68654380 - MIR SINE MIR -46 216 34 1870 172 3 0 chr12 75132460 75132757 -68653698 + AluJo SINE Alu 1 298 -14 206 304 96 48 chr12 75133323 75133448 -68653007 + L2 LINE L2 2894 3024 -248 2209 123 0 0 chr12 75134717 75135010 -68651445 + AluSx SINE Alu 1 293 -19 461 188 211 8 chr12 75135325 75135458 -68650997 + MIR SINE MIR 10 169 -93 301 231 103 34 chr12 75135471 75135588 -68650867 + MIR SINE MIR 127 251 -11 340 113 42 0 chr12 75135704 75135775 -68650680 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1191 223 9 0 chr12 75135800 75136024 -68650431 + Charlie1 DNA MER1_type 1 226 -2535 695 199 7 0 chr12 75136019 75136160 -68650295 + Charlie1 DNA MER1_type 2620 2761 0 * 239 270 32 0 chr12 75137502 75137565 -68648890 - MIR3 SINE MIR 0 208 144 206 231 0 0 chr12 75137592 75137631 -68648824 + CT-rich Low_complexity Low_complexity 2 40 0 245 297 14 0 chr12 75137791 75137865 -68648590 + CT-rich Low_complexity Low_complexity 1 75 0 596 257 20 17 chr12 75138503 75138711 -68647744 - MIR SINE MIR -6 256 8 2335 103 0 10 chr12 75140310 75140621 -68645834 - AluSx SINE Alu 0 312 5 722 206 8 8 chr12 75141020 75141151 -68645304 - FLAM_A SINE Alu -2 131 1 967 183 83 0 chr12 75142298 75142478 -68643977 + MER20 DNA MER1_type 1 195 -24 1981 117 11 14 chr12 75142823 75143104 -68643351 + AluSx SINE Alu 6 285 -27 454 256 55 59 chr12 75143946 75144452 -68642003 - L1M2 LINE L1 -697 5486 5043 188 234 195 13 chr12 75145577 75145654 -68640801 + L2 LINE L2 3187 3277 -36 345 305 28 14 chr12 75145736 75145877 -68640578 + MIR3 SINE MIR 38 180 -28 2183 114 0 7 chr12 75145878 75146177 -68640278 + AluSx SINE Alu 1 297 -15 331 262 127 19 chr12 75146318 75146504 -68639951 - MIR SINE MIR -10 252 37 415 256 78 0 chr12 75146669 75146798 -68639657 - MIR SINE MIR -6 256 118 5001 208 1 5 chr12 75146802 75147745 -68638710 + HERVI LTR ERV1 6807 7745 -40 392 303 63 0 chr12 75147772 75147914 -68638541 - MIR SINE MIR -66 196 46 292 185 31 31 chr12 75148959 75149024 -68637431 + Charlie8 DNA MER1_type 1355 1419 -998 1924 134 29 0 chr12 75149676 75149953 -68636502 - AluSx SINE Alu -27 285 1 1683 170 13 29 chr12 75150538 75150844 -68635611 + AluJo SINE Alu 5 305 -7 185 0 40 0 chr12 75151121 75151146 -68635309 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 618 204 0 0 chr12 75151167 75151275 -68635180 - FLAM_A SINE Alu -33 109 2 26 64 0 0 chr12 75151302 75151349 -68635106 + AT_rich Low_complexity Low_complexity 1 47 0 2172 118 0 16 chr12 75151468 75151774 -68634681 + AluSx SINE Alu 1 301 -11 438 277 100 0 chr12 75151777 75151907 -68634548 + MIR SINE MIR 22 164 -98 595 297 80 4 chr12 75151998 75152237 -68634218 + MIR SINE MIR 6 262 0 917 57 0 0 chr12 75153158 75153264 -68633191 + AluSp SINE Alu 1 106 -207 677 308 59 77 chr12 75153419 75153752 -68632703 - L3 LINE CR1 -11 1566 1247 240 111 0 0 chr12 75153752 75153788 -68632667 + (CA)n Simple_repeat Simple_repeat 2 37 0 677 308 59 77 chr12 75153788 75154051 -68632404 - L3 LINE CR1 -330 1247 981 292 218 0 39 chr12 75154050 75154128 -68632327 + L2 LINE L2 3239 3313 0 * 386 255 166 34 chr12 75154245 75154480 -68631975 + MLT1J LTR MaLR 76 341 -170 245 92 108 92 chr12 75154507 75154572 -68631883 + MLT1J2 LTR MaLR 385 450 0 1657 141 62 0 chr12 75154758 75155000 -68631455 + AluSx SINE Alu 1 257 -55 2470 76 7 0 chr12 75155258 75155559 -68630896 + AluY SINE Alu 1 303 -8 252 313 12 12 chr12 75155562 75155645 -68630810 - MIR SINE MIR -139 123 41 264 292 37 92 chr12 75156263 75156680 -68629775 + L2 LINE L2 2682 3072 -200 241 167 0 0 chr12 75156780 75156822 -68629633 + L2 LINE L2 3264 3305 -8 2402 102 0 3 chr12 75157174 75157487 -68628968 + AluSx SINE Alu 1 312 0 371 248 44 26 chr12 75158211 75158324 -68628131 + MIR SINE MIR 19 133 -75 486 145 13 0 chr12 75158398 75158474 -68627981 + MLT2D LTR ERVL 1 77 -337 277 375 21 7 chr12 75158705 75158849 -68627606 - MIR3 SINE MIR -10 198 53 1618 188 98 17 chr12 75158949 75159295 -68627160 - MLT1A2 LTR MaLR 0 374 1 2213 114 3 3 chr12 75159342 75159640 -68626815 + AluSg SINE Alu 1 298 -12 2448 81 7 0 chr12 75159656 75159965 -68626490 + AluY SINE Alu 1 311 0 1050 111 6 11 chr12 75159969 75160149 -68626306 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 778 306 64 29 chr12 75160370 75160746 -68625709 - L2 LINE L2 -5 3308 2920 1980 159 126 77 chr12 75160773 75161036 -68625419 + MER4A LTR ERV1 1 250 -350 1649 129 8 8 chr12 75161036 75161284 -68625171 + AluSx SINE Alu 57 304 -8 1980 159 126 77 chr12 75161284 75161592 -68624863 + MER4A LTR ERV1 250 600 0 391 301 148 40 chr12 75162049 75163021 -68623434 - L2 LINE L2 -23 3290 2188 264 284 43 57 chr12 75163461 75163602 -68622853 - MIR SINE MIR -2 260 122 22 56 0 0 chr12 75163849 75163885 -68622570 + AT_rich Low_complexity Low_complexity 1 36 0 1336 170 0 5 chr12 75163895 75164107 -68622348 - AluJb SINE Alu -16 296 86 2235 130 99 8 chr12 75164187 75164579 -68621876 - MSTA LTR MaLR 0 428 1 519 243 127 0 chr12 75165076 75165257 -68621198 + MIR SINE MIR 59 262 0 2283 122 0 0 chr12 75165722 75166033 -68620422 + AluSx SINE Alu 1 311 -1 446 315 30 20 chr12 75166126 75166326 -68620129 - MIR SINE MIR -1 261 60 5069 131 49 4 chr12 75166331 75167149 -68619306 + L1MC1 LINE L1 5470 6324 -9 707 188 8 15 chr12 75167151 75167284 -68619171 + FLAM_C SINE Alu 1 132 -1 297 167 33 17 chr12 75167323 75167383 -68619072 - MIR SINE MIR -199 63 3 324 0 0 0 chr12 75167433 75167469 -68618986 + (CA)n Simple_repeat Simple_repeat 2 37 0 1971 108 54 7 chr12 75167507 75167784 -68618671 + AluSc SINE Alu 1 290 -19 308 301 186 5 chr12 75168686 75168879 -68617576 - MIR SINE MIR -12 250 23 1986 157 0 3 chr12 75168960 75169259 -68617196 + AluJb SINE Alu 1 298 -14 289 335 95 13 chr12 75169441 75169599 -68616856 - MIR3 SINE MIR -37 171 1 2136 120 0 10 chr12 75170527 75170828 -68615627 - AluSx SINE Alu -14 298 1 383 308 18 1 chr12 75170881 75171013 -68615442 - MIR SINE MIR -62 146 30 1101 128 45 0 chr12 75171736 75171915 -68614540 - MER20 DNA MER1_type 0 219 33 2220 123 3 7 chr12 75172312 75172620 -68613835 + AluSx SINE Alu 1 307 -5 180 0 0 0 chr12 75173213 75173233 -68613222 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 389 309 94 17 chr12 75173275 75173456 -68612999 - L2 LINE L2 -2 3311 3117 854 270 118 58 chr12 75173550 75174068 -68612387 + LTR67 LTR ERVL 2 550 -7 4294 160 74 68 chr12 75174413 75175320 -68611135 - MER21A LTR ERV1 -18 913 2 1189 273 130 11 chr12 75176129 75176591 -68609864 - HAL1 LINE L1 -723 1784 1268 1883 108 13 76 chr12 75176591 75176603 -68609852 - AluSq SINE Alu -18 295 284 210 71 0 0 chr12 75176603 75176631 -68609824 + (TG)n Simple_repeat Simple_repeat 1 28 0 1883 108 13 76 chr12 75176631 75176933 -68609522 - AluSq SINE Alu -29 284 1 1435 186 73 7 chr12 75176954 75177228 -68609227 - AluJb SINE Alu -20 292 1 31 0 0 0 chr12 75177265 75177296 -68609159 + AT_rich Low_complexity Low_complexity 1 31 0 586 108 9 47 chr12 75177305 75177328 -68609127 - L1M3 LINE L1 -480 5691 5669 2109 114 0 29 chr12 75177328 75177635 -68608820 + AluSq SINE Alu 3 300 -13 586 108 9 47 chr12 75177635 75177743 -68608712 - L1M3 LINE L1 -502 5669 5570 299 207 25 66 chr12 75177742 75177863 -68608592 - HAL1 LINE L1 -1398 1109 994 * 605 294 56 0 chr12 75177871 75178051 -68608404 + MIR SINE MIR 9 198 -64 201 343 128 0 chr12 75178284 75178386 -68608069 + L2 LINE L2 3144 3258 -14 184 274 123 38 chr12 75178392 75178498 -68607957 + MIR SINE MIR 100 214 -48 259 220 20 60 chr12 75179129 75179229 -68607226 - L1MC/D LINE L1 -1909 5899 5804 720 256 33 105 chr12 75179245 75179577 -68606878 - MLT1J1 LTR MaLR -27 419 112 413 269 114 81 chr12 75179838 75179967 -68606488 + L1ME4a LINE L1 5504 5627 -494 2150 129 0 3 chr12 75179967 75180269 -68606186 - AluSx SINE Alu -11 301 1 413 269 114 81 chr12 75180269 75180518 -68605937 + L1ME4a LINE L1 5627 5893 -228 385 208 152 8 chr12 75181042 75181167 -68605288 - Charlie1 DNA MER1_type -5 2756 2614 1979 91 0 41 chr12 75181169 75181489 -68604966 - AluSx SINE Alu -5 307 1 308 62 62 0 chr12 75181772 75181820 -68604635 + Alu SINE Alu 256 306 -2 2494 181 55 43 chr12 75182299 75182543 -68603912 + L1PB4 LINE L1 5525 5765 -391 6495 18 0 0 chr12 75182543 75183268 -68603187 + L1PA3 LINE L1 5431 6155 0 2494 181 55 43 chr12 75183268 75183646 -68602809 + L1PB4 LINE L1 5765 6154 -2 197 137 196 20 chr12 75183958 75184009 -68602446 + MIR SINE MIR 157 216 -46 1033 181 49 25 chr12 75184495 75184699 -68601756 + AluJb SINE Alu 84 292 -20 1373 131 0 23 chr12 75184771 75184992 -68601463 + AluSg/x SINE Alu 79 294 -16 1349 119 11 0 chr12 75185112 75185289 -68601166 - AluSq SINE Alu -134 179 1 709 135 19 70 chr12 75185892 75186160 -68600295 + MSTC LTR MaLR 1 303 -125 21 57 0 0 chr12 75187274 75187309 -68599146 + AT_rich Low_complexity Low_complexity 1 35 0 2152 124 7 3 chr12 75187387 75187693 -68598762 + AluSq SINE Alu 1 307 -6 1428 163 58 33 chr12 75187695 75187971 -68598484 + AluJo SINE Alu 1 283 -19 200 332 117 18 chr12 75188058 75188281 -68598174 - L3 LINE CR1 -24 1553 1309 611 274 28 19 chr12 75190029 75190241 -68596214 - MIR SINE MIR -17 245 32 731 227 68 6 chr12 75190985 75191148 -68595307 - FAM SINE Alu -11 174 2 2410 82 0 7 chr12 75191367 75191670 -68594785 - AluSg SINE Alu -9 301 1 22 35 0 0 chr12 75192160 75192189 -68594266 + AT_rich Low_complexity Low_complexity 1 29 0 1926 146 38 0 chr12 75192221 75192509 -68593946 - AluJo SINE Alu -13 299 1 1769 165 3 10 chr12 75192932 75193229 -68593226 - AluJb SINE Alu -17 295 1 2182 99 3 17 chr12 75194149 75194441 -68592014 - AluSg SINE Alu -22 288 1 2133 101 7 42 chr12 75194579 75194887 -68591568 - AluSp SINE Alu -14 299 3 1409 69 53 5 chr12 75195167 75195355 -68591100 - MER107 DNA MER1_type 0 197 1 312 230 187 22 chr12 75195387 75195526 -68590929 - MER112 DNA MER1_type -50 210 49 232 261 80 57 chr12 75195619 75195707 -68590748 + MIR SINE MIR 20 109 -153 2199 115 0 7 chr12 75196060 75196365 -68590090 + AluSx SINE Alu 1 303 -9 798 222 29 0 chr12 75196744 75196915 -68589540 + MER8 DNA MER2_type 2 177 -62 345 174 58 0 chr12 75196948 75197017 -68589438 - Tigger2 DNA MER2_type -2645 73 1 2018 129 13 13 chr12 75197850 75198153 -68588302 + AluSx SINE Alu 1 303 -9 408 83 0 17 chr12 75198217 75198277 -68588178 - Charlie3 DNA MER1_type -4 2706 2648 24 0 0 0 chr12 75199834 75199858 -68586597 + AT_rich Low_complexity Low_complexity 1 24 0 2447 87 0 0 chr12 75200378 75200690 -68585765 - AluSx SINE Alu 0 312 1 1342 144 10 0 chr12 75201019 75201221 -68585234 - AluJo SINE Alu -108 204 1 22 0 0 0 chr12 75201226 75201248 -68585207 + AT_rich Low_complexity Low_complexity 1 22 0 1089 140 41 6 chr12 75202281 75202452 -68584003 - AluSg/x SINE Alu -2 310 134 1808 141 24 10 chr12 75203307 75203598 -68582857 + AluJb SINE Alu 4 298 -14 1342 83 0 0 chr12 75203658 75203827 -68582628 + AluSp SINE Alu 137 305 -8 734 165 30 55 chr12 75204278 75204442 -68582013 + MER5B DNA MER1_type 19 178 0 2051 136 0 19 chr12 75204976 75205286 -68581169 + AluSx SINE Alu 1 304 -8 431 377 19 6 chr12 75206833 75206992 -68579463 - MER91A DNA MER1_type -35 161 1 1134 150 18 82 chr12 75207325 75207545 -68578910 + AluJo SINE Alu 85 290 -22 261 0 0 0 chr12 75207926 75207955 -68578500 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1155 314 62 20 chr12 75209578 75210123 -68576332 - MLT1K LTR MaLR -17 571 4 252 300 100 105 chr12 75210846 75211127 -68575328 - L2 LINE L2 -1 3271 2990 2126 98 7 36 chr12 75211127 75211433 -68575022 + AluSx SINE Alu 4 300 -12 252 300 100 105 chr12 75211433 75211846 -68574609 - L2 LINE L2 -282 2990 2538 181 350 202 14 chr12 75211879 75212225 -68574230 - L2 LINE L2 -908 2406 1996 21 0 0 0 chr12 75212363 75212384 -68574071 + AT_rich Low_complexity Low_complexity 1 21 0 1866 138 0 23 chr12 75212402 75212707 -68573748 + AluJb SINE Alu 1 298 -14 214 364 0 13 chr12 75212995 75213072 -68573383 - MER5A DNA MER1_type 0 189 114 578 191 12 101 chr12 75213073 75213173 -68573282 + MER5B DNA MER1_type 26 107 -71 2397 91 0 3 chr12 75213173 75213481 -68572974 - AluSx SINE Alu -5 307 1 578 191 12 101 chr12 75213481 75213548 -68572907 + MER5B DNA MER1_type 107 178 0 268 283 80 18 chr12 75213548 75213660 -68572795 - MER5A DNA MER1_type -68 121 3 846 135 8 15 chr12 75213811 75213944 -68572511 - FLAM_C SINE Alu 0 133 2 423 242 36 117 chr12 75214228 75214476 -68571979 + L1MC4a LINE L1 5697 5924 -1884 2323 64 7 3 chr12 75214673 75214969 -68571486 + AluY SINE Alu 1 297 -14 260 191 0 0 chr12 75215018 75215060 -68571395 + L2 LINE L2 3226 3267 -5 456 227 65 65 chr12 75215175 75215329 -68571126 - MIR SINE MIR -19 243 90 360 111 0 0 chr12 75215342 75215396 -68571059 + (CA)n Simple_repeat Simple_repeat 2 55 0 2048 111 7 0 chr12 75215422 75215702 -68570753 - AluSx SINE Alu -30 282 1 235 305 122 46 chr12 75215969 75216100 -68570355 - MIR SINE MIR -31 231 91 217 225 0 0 chr12 75216169 75216209 -68570246 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr12 75217032 75217053 -68569402 + AT_rich Low_complexity Low_complexity 1 21 0 415 212 30 40 chr12 75217486 75217585 -68568870 - AluJb SINE Alu -20 292 195 1028 194 87 38 chr12 75217697 75217986 -68568469 + MER58B DNA MER1_type 36 338 -3 316 375 18 0 chr12 75218495 75218607 -68567848 + MIR SINE MIR 12 125 -137 2112 128 0 0 chr12 75218677 75218978 -68567477 - AluSx SINE Alu 0 312 6 1735 161 11 11 chr12 75218988 75219274 -68567181 - AluSx SINE Alu -22 290 5 316 235 49 0 chr12 75219544 75219625 -68566830 + MIR SINE MIR 69 153 -109 198 286 0 0 chr12 75220038 75220087 -68566368 - MER5C DNA MER1_type -274 50 2 1844 157 4 4 chr12 75220100 75220381 -68566074 - AluJb SINE Alu -31 281 1 281 263 10 20 chr12 75220397 75220496 -68565959 + L2 LINE L2 2403 2500 -814 594 218 68 88 chr12 75220596 75221004 -68565451 + MLT1H LTR MaLR 152 595 0 183 194 0 0 chr12 75221050 75221086 -68565369 + L2 LINE L2 2611 2646 -668 940 119 0 25 chr12 75221096 75221255 -68565200 + AluY SINE Alu 157 311 0 411 340 97 44 chr12 75221392 75221713 -68564742 + L2 LINE L2 2815 3152 -120 22 35 0 0 chr12 75222930 75222959 -68563496 + AT_rich Low_complexity Low_complexity 1 29 0 2115 134 0 3 chr12 75228001 75228300 -68558155 + AluSx SINE Alu 1 298 -14 2038 145 0 25 chr12 75228631 75228949 -68557506 + AluSx SINE Alu 1 310 -2 30 0 0 0 chr12 75228980 75229010 -68557445 + AT_rich Low_complexity Low_complexity 1 30 0 1946 119 11 0 chr12 75229088 75229357 -68557098 - AluSx SINE Alu -5 307 36 2551 62 13 0 chr12 75229677 75229983 -68556472 - AluSp SINE Alu -3 310 1 407 228 103 0 chr12 75229985 75230130 -68556325 - MER104 DNA Tc2 -19 161 2 1588 155 4 8 chr12 75230633 75230911 -68555544 - AluJo SINE Alu 0 303 27 188 67 33 0 chr12 75230931 75230961 -68555494 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 405 289 194 45 chr12 75231693 75232274 -68554181 - L2 LINE L2 -743 2571 1904 219 306 71 61 chr12 75232397 75232495 -68553960 + L3 LINE CR1 1396 1494 -83 494 222 127 80 chr12 75233105 75233380 -68553075 + LTR33 LTR ERVL 228 515 -6 979 237 47 8 chr12 75233587 75233840 -68552615 + L2 LINE L2 2443 2705 -609 1662 190 3 40 chr12 75233854 75234175 -68552280 + AluJo SINE Alu 1 309 -3 635 204 43 19 chr12 75234179 75234390 -68552065 - LTR37A LTR ERV1 -2 424 209 253 65 109 0 chr12 75234465 75234511 -68551944 - L1MB4 LINE L1 0 6180 6130 1177 207 0 5 chr12 75234529 75234742 -68551713 - AluJo SINE Alu -14 298 87 3116 144 44 5 chr12 75234744 75235315 -68551140 - L1MB2 LINE L1 -118 6053 5461 894 143 15 0 chr12 75235316 75235449 -68551006 + AluSq/x SINE Alu 1 135 -178 1964 164 0 0 chr12 75235449 75235742 -68550713 + AluSx SINE Alu 1 293 -19 4185 190 108 47 chr12 75235743 75236229 -68550226 - L1MB2 LINE L1 -710 5470 5015 2282 93 3 3 chr12 75236229 75236519 -68549936 - AluSg SINE Alu -9 301 12 4185 190 108 47 chr12 75236519 75237291 -68549164 - L1MB2 LINE L1 -1165 5015 3955 2073 141 7 3 chr12 75237291 75237582 -68548873 - AluSx SINE Alu -20 292 1 4185 190 108 47 chr12 75237582 75237839 -68548616 - L1MB2 LINE L1 -2225 3955 3715 1464 283 12 61 chr12 75238027 75238641 -68547814 + L2 LINE L2 2735 3311 -2 314 104 254 0 chr12 75239533 75239600 -68546855 + MER2 DNA MER2_type 123 206 -139 311 277 0 0 chr12 75239632 75239697 -68546758 + MER2 DNA MER2_type 280 344 -1 2004 151 3 3 chr12 75240159 75240463 -68545992 - AluJb SINE Alu -8 304 1 3336 156 26 96 chr12 75240947 75241720 -68544735 - L1MC3 LINE L1 -255 7530 6704 2357 93 0 13 chr12 75241720 75242033 -68544422 - AluY SINE Alu 0 311 3 2098 68 0 4 chr12 75242035 75242299 -68544156 - AluSg SINE Alu -13 297 35 3336 156 26 96 chr12 75242299 75242379 -68544076 - L1MC3 LINE L1 -967 6818 6734 1396 99 204 59 chr12 75242379 75242635 -68543820 + MER46B DNA MER2_type 1 185 -2546 2099 101 4 7 chr12 75242635 75242933 -68543522 + AluSg SINE Alu 3 299 0 1396 99 204 59 chr12 75242933 75242979 -68543476 + MER46B DNA MER2_type 185 223 -13 364 98 16 0 chr12 75243005 75243066 -68543389 - L1MC4a LINE L1 -1103 6705 6644 321 79 32 16 chr12 75243751 75243814 -68542641 + (TA)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chr12 75243821 75243843 -68542612 + AT_rich Low_complexity Low_complexity 1 22 0 1878 159 126 77 chr12 75245107 75245287 -68541168 + MER4A LTR ERV1 1 171 -429 334 133 0 0 chr12 75245287 75245332 -68541123 + AluJ/FLAM SINE Alu 13 57 -245 1878 159 126 77 chr12 75245332 75245370 -68541085 + MER4A LTR ERV1 171 206 -394 1649 129 8 8 chr12 75245370 75245618 -68540837 + AluSx SINE Alu 57 304 -8 1878 159 126 77 chr12 75245618 75245926 -68540529 + MER4A LTR ERV1 206 600 0 406 295 186 38 chr12 75246383 75247354 -68539101 - L2 LINE L2 -23 3290 2188 277 277 43 57 chr12 75247794 75247935 -68538520 - MIR SINE MIR -2 260 122 22 56 0 0 chr12 75248183 75248219 -68538236 + AT_rich Low_complexity Low_complexity 1 36 0 1364 162 0 5 chr12 75248229 75248439 -68538016 - AluJb SINE Alu -18 294 86 2247 128 99 8 chr12 75248519 75248911 -68537544 - MSTA LTR MaLR 0 428 1 519 243 127 0 chr12 75249407 75249588 -68536867 + MIR SINE MIR 59 262 0 2232 132 0 0 chr12 75250053 75250364 -68536091 + AluSx SINE Alu 1 311 -1 446 315 30 20 chr12 75250457 75250657 -68535798 - MIR SINE MIR -1 261 60 5069 131 49 4 chr12 75250662 75251480 -68534975 + L1MC1 LINE L1 5470 6324 -9 654 194 8 22 chr12 75251482 75251616 -68534839 + FLAM_C SINE Alu 1 132 -1 297 167 33 17 chr12 75251655 75251715 -68534740 - MIR SINE MIR -199 63 3 205 179 0 0 chr12 75251787 75251826 -68534629 + (CAAG)n Simple_repeat Simple_repeat 3 41 0 1971 108 54 7 chr12 75251894 75252171 -68534284 + AluSc SINE Alu 1 290 -19 308 301 186 5 chr12 75253073 75253266 -68533189 - MIR SINE MIR -12 250 23 1986 157 0 3 chr12 75253347 75253646 -68532809 + AluJb SINE Alu 1 298 -14 289 335 95 13 chr12 75253828 75253986 -68532469 - MIR3 SINE MIR -37 171 1 2136 120 0 10 chr12 75254939 75255240 -68531215 - AluSx SINE Alu -14 298 1 329 302 18 19 chr12 75255293 75255427 -68531028 - MIR SINE MIR -62 146 30 1101 128 45 0 chr12 75256152 75256331 -68530124 - MER20 DNA MER1_type 0 219 33 2238 120 3 7 chr12 75256728 75257036 -68529419 + AluSx SINE Alu 1 307 -5 180 0 0 0 chr12 75257690 75257710 -68528745 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 389 309 94 17 chr12 75257752 75257933 -68528522 - L2 LINE L2 -2 3311 3117 842 272 118 58 chr12 75258027 75258545 -68527910 + LTR67 LTR ERVL 2 550 -7 4187 158 73 84 chr12 75258890 75259813 -68526642 - MER21A LTR ERV1 -18 913 2 1189 273 130 11 chr12 75260622 75261084 -68525371 - HAL1 LINE L1 -723 1784 1268 1906 105 13 76 chr12 75261084 75261096 -68525359 - AluSq SINE Alu -18 295 284 210 71 0 0 chr12 75261096 75261124 -68525331 + (TG)n Simple_repeat Simple_repeat 1 28 0 1906 105 13 76 chr12 75261124 75261426 -68525029 - AluSq SINE Alu -29 284 1 1435 186 73 7 chr12 75261447 75261721 -68524734 - AluJb SINE Alu -20 292 1 31 0 0 0 chr12 75261758 75261789 -68524666 + AT_rich Low_complexity Low_complexity 1 31 0 586 108 9 48 chr12 75261798 75261821 -68524634 - L1M3 LINE L1 -480 5691 5669 2034 113 0 63 chr12 75261821 75262140 -68524315 + AluSq SINE Alu 3 301 -12 586 108 9 48 chr12 75262140 75262248 -68524207 - L1M3 LINE L1 -502 5669 5570 299 207 25 66 chr12 75262247 75262368 -68524087 - HAL1 LINE L1 -1398 1109 994 * 605 294 56 0 chr12 75262376 75262556 -68523899 + MIR SINE MIR 9 198 -64 201 343 128 0 chr12 75262788 75262890 -68523565 + L2 LINE L2 3144 3258 -14 184 274 123 38 chr12 75262896 75263002 -68523453 + MIR SINE MIR 100 214 -48 259 220 20 60 chr12 75263634 75263734 -68522721 - L1MC/D LINE L1 -1909 5899 5804 720 256 33 105 chr12 75263750 75264082 -68522373 - MLT1J1 LTR MaLR -27 419 112 587 270 120 70 chr12 75264343 75264472 -68521983 + L1ME4a LINE L1 5504 5625 -496 2142 130 0 3 chr12 75264472 75264773 -68521682 - AluSx SINE Alu -12 300 1 587 270 120 70 chr12 75264773 75265033 -68521422 + L1ME4a LINE L1 5625 5934 -187 2004 128 7 3 chr12 75265033 75265321 -68521134 + AluJb SINE Alu 13 301 -11 587 270 120 70 chr12 75265321 75265447 -68521008 + L1ME4a LINE L1 5934 6052 -69 1792 155 24 3 chr12 75267252 75267542 -68518913 - AluJo SINE Alu -16 296 1 2437 52 10 33 chr12 75268875 75269181 -68517274 - AluY SINE Alu -12 299 1 605 237 169 23 chr12 75269594 75269813 -68516642 + MIR SINE MIR 2 252 -10 192 299 81 0 chr12 75270503 75270590 -68515865 - MIR SINE MIR -20 242 149 1180 58 0 0 chr12 75270682 75270821 -68515634 - AluY SINE Alu -9 302 164 1888 49 4 4 chr12 75270821 75271046 -68515409 - AluY SINE Alu -86 225 1 308 62 62 0 chr12 75271329 75271377 -68515078 + Alu SINE Alu 256 306 -2 2394 182 63 47 chr12 75271856 75272095 -68514360 + L1PB4 LINE L1 5525 5759 -397 6453 21 0 0 chr12 75272095 75272820 -68513635 + L1PA3 LINE L1 5431 6155 0 2394 182 63 47 chr12 75272820 75273200 -68513255 + L1PB4 LINE L1 5759 6154 -2 197 137 196 20 chr12 75273512 75273563 -68512892 + MIR SINE MIR 157 216 -46 1047 187 29 29 chr12 75274045 75274254 -68512201 + AluJb SINE Alu 84 292 -20 1373 131 0 23 chr12 75274325 75274546 -68511909 + AluSg/x SINE Alu 81 296 -16 1349 119 11 0 chr12 75274666 75274843 -68511612 - AluSq SINE Alu -134 179 1 709 135 19 70 chr12 75275446 75275714 -68510741 + MSTC LTR MaLR 1 303 -125 21 57 0 0 chr12 75276829 75276864 -68509591 + AT_rich Low_complexity Low_complexity 1 35 0 2170 121 7 3 chr12 75276942 75277248 -68509207 + AluSq SINE Alu 1 307 -6 1428 163 58 33 chr12 75277250 75277526 -68508929 + AluJo SINE Alu 1 283 -19 200 332 117 18 chr12 75277613 75277836 -68508619 - L3 LINE CR1 -24 1553 1309 611 274 28 19 chr12 75279583 75279795 -68506660 - MIR SINE MIR -17 245 32 23 0 0 0 chr12 75280321 75280344 -68506111 + AT_rich Low_complexity Low_complexity 1 23 0 715 233 68 6 chr12 75280539 75280702 -68505753 - FAM SINE Alu -11 174 2 2363 86 0 7 chr12 75280921 75281222 -68505233 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 75281704 75281733 -68504722 + AT_rich Low_complexity Low_complexity 1 29 0 1929 145 38 0 chr12 75281765 75282054 -68504401 - AluJo SINE Alu -12 300 1 1754 166 7 10 chr12 75282477 75282773 -68503682 - AluJb SINE Alu -17 295 1 2182 99 3 17 chr12 75283692 75283984 -68502471 - AluSg SINE Alu -22 288 1 2141 100 7 42 chr12 75284122 75284431 -68502024 - AluSp SINE Alu -13 300 3 1409 69 53 5 chr12 75284713 75284901 -68501554 - MER107 DNA MER1_type 0 197 1 312 230 187 22 chr12 75284933 75285072 -68501383 - MER112 DNA MER1_type -50 210 49 204 307 68 45 chr12 75285165 75285253 -68501202 + MIR SINE MIR 20 109 -153 275 208 114 87 chr12 75285308 75285457 -68500998 + MLT1J LTR MaLR 353 505 -6 2230 112 0 7 chr12 75285606 75285909 -68500546 + AluSx SINE Alu 1 301 -11 822 234 29 0 chr12 75286292 75286463 -68499992 + MER8 DNA MER2_type 2 177 -62 372 159 58 0 chr12 75286496 75286565 -68499890 - Tigger2 DNA MER2_type -2645 73 1 2025 129 13 13 chr12 75287398 75287701 -68498754 + AluSx SINE Alu 1 303 -9 440 83 0 17 chr12 75287765 75287825 -68498630 - Charlie3 DNA MER1_type -4 2706 2648 225 237 85 0 chr12 75287852 75287911 -68498544 + L1ME LINE L1 5575 5638 -528 24 0 0 0 chr12 75289382 75289406 -68497049 + AT_rich Low_complexity Low_complexity 1 24 0 2463 90 0 0 chr12 75289925 75290237 -68496218 - AluSx SINE Alu 0 312 1 334 257 221 35 chr12 75291398 75291624 -68494831 - HAL1 LINE L1 -4 2503 2236 2460 70 3 0 chr12 75292014 75292315 -68494140 + AluSx SINE Alu 1 302 -10 698 133 9 0 chr12 75292328 75292441 -68494014 - FLAM_A SINE Alu 0 142 29 1213 200 91 34 chr12 75292538 75292858 -68493597 + MER58B DNA MER1_type 1 338 -3 277 379 0 0 chr12 75293367 75293470 -68492985 + MIR SINE MIR 12 114 -148 2119 128 0 0 chr12 75293549 75293850 -68492605 - AluSx SINE Alu 0 312 6 1724 164 11 11 chr12 75293860 75294146 -68492309 - AluSx SINE Alu -22 290 5 293 211 53 0 chr12 75294421 75294497 -68491958 + MIR SINE MIR 74 153 -109 182 286 0 0 chr12 75294910 75294959 -68491496 - MER5C DNA MER1_type -274 50 2 1846 157 4 4 chr12 75294972 75295253 -68491202 - AluJb SINE Alu -31 281 1 254 263 10 20 chr12 75295269 75295368 -68491087 + L2 LINE L2 2403 2500 -814 707 220 72 97 chr12 75295468 75295873 -68490582 + MLT1H LTR MaLR 152 563 -4 1035 84 0 26 chr12 75295968 75296122 -68490333 + AluY SINE Alu 157 306 -5 410 335 102 43 chr12 75296241 75296566 -68489889 + L2 LINE L2 2809 3152 -120 22 35 0 0 chr12 75297783 75297812 -68488643 + AT_rich Low_complexity Low_complexity 1 29 0 2109 134 0 0 chr12 75302854 75303152 -68483303 + AluSx SINE Alu 1 298 -14 307 303 232 5 chr12 75303207 75303405 -68483050 + L1 LINE L1 4068 4310 -1836 2073 108 0 7 chr12 75303483 75303761 -68482694 + AluSx SINE Alu 1 276 -36 2251 77 0 11 chr12 75304722 75305036 -68481419 - AluY SINE Alu 0 311 1 385 320 33 50 chr12 75305647 75305828 -68480627 - MIR SINE MIR -19 243 66 381 233 186 13 chr12 75306825 75306994 -68479461 - MIR SINE MIR -10 252 56 212 346 56 19 chr12 75307665 75307772 -68478683 - MIR3 SINE MIR -25 183 73 411 68 0 0 chr12 75308000 75308059 -68478396 + (GA)n Simple_repeat Simple_repeat 2 60 0 255 61 0 0 chr12 75308074 75308107 -68478348 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 603 115 52 10 chr12 75308108 75308204 -68478251 - FLAM_A SINE Alu -42 100 1 308 307 63 87 chr12 75308875 75309175 -68477280 + L2 LINE L2 2994 3286 -27 198 103 0 0 chr12 75309421 75309450 -68477005 + (GA)n Simple_repeat Simple_repeat 2 30 0 190 258 103 72 chr12 75309885 75309982 -68476473 + L2 LINE L2 3137 3236 -36 741 137 0 24 chr12 75309982 75310106 -68476349 - AluSp/q SINE Alu -11 302 182 33 43 0 0 chr12 75310128 75310175 -68476280 + AT_rich Low_complexity Low_complexity 1 47 0 6691 134 48 13 chr12 75310452 75311642 -68474813 + Tigger3b DNA MER2_type 1 1231 0 192 373 140 30 chr12 75311730 75312194 -68474261 - L2 LINE L2 -508 2806 2292 1939 136 7 17 chr12 75313620 75313921 -68472534 + AluJo SINE Alu 1 298 -14 32 26 0 0 chr12 75313921 75313960 -68472495 + AT_rich Low_complexity Low_complexity 1 39 0 736 170 15 30 chr12 75314150 75314285 -68472170 + FLAM_C SINE Alu 1 133 0 322 238 38 12 chr12 75314709 75314789 -68471666 + MIR3 SINE MIR 106 187 -21 244 254 0 34 chr12 75315126 75315185 -68471270 - L2 LINE L2 -13 3259 3203 495 302 111 0 chr12 75315919 75316108 -68470347 - MIR SINE MIR -25 237 28 316 257 14 0 chr12 75316116 75316186 -68470269 + MIR SINE MIR 188 258 -4 305 313 96 17 chr12 75316199 75316314 -68470141 + MIR SINE MIR 65 188 -74 196 339 138 0 chr12 75317214 75317344 -68469111 - L3b LINE CR1 -117 1466 1319 782 118 50 0 chr12 75317465 75317584 -68468871 - FLAM_C SINE Alu -8 125 1 621 319 91 66 chr12 75317734 75318161 -68468294 - L2 LINE L2 -7 3265 2828 342 0 0 0 chr12 75318992 75319030 -68467425 + (CA)n Simple_repeat Simple_repeat 1 38 0 1800 159 54 0 chr12 75320003 75320299 -68466156 + AluSx SINE Alu 1 312 0 758 168 0 0 chr12 75320424 75320543 -68465912 + FLAM_C SINE Alu 1 119 -24 997 225 77 5 chr12 75320869 75321091 -68465364 + MER8 DNA MER2_type 2 239 0 323 252 0 56 chr12 75321172 75321279 -68465176 + L1ME4a LINE L1 5785 5885 -236 2299 96 10 13 chr12 75321279 75321592 -68464863 + AluSx SINE Alu 1 312 0 1780 164 3 13 chr12 75321616 75321915 -68464540 + AluJo SINE Alu 1 296 -16 1424 115 59 4 chr12 75321917 75322170 -68464285 + L1MD3 LINE L1 7729 7995 0 238 232 126 11 chr12 75322280 75322375 -68464080 + L1ME4a LINE L1 5966 6071 -50 2270 92 0 19 chr12 75323253 75323568 -68462887 + AluY SINE Alu 1 309 -2 30 0 0 0 chr12 75323599 75323629 -68462826 + AT_rich Low_complexity Low_complexity 1 30 0 1935 108 12 0 chr12 75323719 75323977 -68462478 - AluSx SINE Alu -16 296 36 2527 62 13 0 chr12 75324297 75324603 -68461852 - AluSp SINE Alu -3 310 1 462 221 103 0 chr12 75324605 75324750 -68461705 - MER104 DNA Tc2 -19 161 2 1583 155 4 8 chr12 75325251 75325529 -68460926 - AluJo SINE Alu 0 303 27 188 67 33 0 chr12 75325549 75325579 -68460876 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 380 291 194 45 chr12 75326311 75326892 -68459563 - L2 LINE L2 -743 2571 1904 216 306 71 61 chr12 75327015 75327113 -68459342 + L3 LINE CR1 1396 1494 -83 590 229 125 79 chr12 75327718 75327997 -68458458 + LTR33 LTR ERVL 224 515 -6 980 237 47 8 chr12 75328204 75328457 -68457998 + L2 LINE L2 2443 2705 -609 1667 180 3 40 chr12 75328471 75328793 -68457662 + AluJo SINE Alu 1 310 -2 884 195 60 18 chr12 75328794 75329076 -68457379 - LTR37A LTR ERV1 0 426 133 265 65 109 0 chr12 75329082 75329128 -68457327 - L1MB2 LINE L1 -2 6169 6119 1172 202 0 5 chr12 75329146 75329359 -68457096 - AluJo SINE Alu -14 298 87 3302 144 44 5 chr12 75329361 75329932 -68456523 - L1MB2 LINE L1 -118 6053 5461 874 143 15 0 chr12 75329933 75330066 -68456389 + AluSq/x SINE Alu 1 135 -178 1921 167 0 0 chr12 75330066 75330359 -68456096 + AluSx SINE Alu 1 293 -19 4620 193 109 40 chr12 75330360 75330834 -68455621 - L1MB2 LINE L1 -710 5470 5030 2273 97 3 3 chr12 75330834 75331133 -68455322 - AluSg SINE Alu 0 310 12 4620 193 109 40 chr12 75331133 75331905 -68454550 - L1MB2 LINE L1 -1150 5030 3953 2051 141 7 3 chr12 75331905 75332196 -68454259 - AluSx SINE Alu -20 292 1 4620 193 109 40 chr12 75332196 75332453 -68454002 - L1MB2 LINE L1 -2227 3953 3715 1463 283 12 61 chr12 75332641 75333255 -68453200 + L2 LINE L2 2735 3311 -2 334 104 254 0 chr12 75334147 75334214 -68452241 + MER2 DNA MER2_type 123 206 -139 333 277 0 0 chr12 75334246 75334311 -68452144 + MER2 DNA MER2_type 280 344 -1 2049 146 3 0 chr12 75334773 75335074 -68451381 - AluJb SINE Alu -10 302 1 3504 156 25 105 chr12 75335558 75336340 -68450115 - L1MC3 LINE L1 -255 7530 6687 2341 95 0 7 chr12 75336340 75336646 -68449809 - AluY SINE Alu -5 306 3 2101 68 0 4 chr12 75336648 75336912 -68449543 - AluSg SINE Alu -13 297 35 3504 156 25 105 chr12 75336912 75336992 -68449463 - L1MC3 LINE L1 -966 6819 6734 1495 99 204 59 chr12 75336992 75337248 -68449207 + MER46B DNA MER2_type 1 185 -2546 2098 101 4 7 chr12 75337248 75337546 -68448909 + AluSg SINE Alu 3 299 0 1495 99 204 59 chr12 75337546 75337592 -68448863 + MER46B DNA MER2_type 185 223 -13 385 98 16 0 chr12 75337618 75337679 -68448776 - L1MC4a LINE L1 -1103 6705 6644 213 98 39 20 chr12 75338359 75338410 -68448045 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr12 75338417 75338439 -68448016 + AT_rich Low_complexity Low_complexity 1 22 0 264 288 0 15 chr12 75338672 75338738 -68447717 + L1MEd LINE L1 442 506 -5613 536 262 87 52 chr12 75338740 75339339 -68447116 + L1MEd LINE L1 1069 1686 -4443 318 261 80 84 chr12 75339416 75339727 -68446728 + L1MEd LINE L1 1767 2076 -4053 1705 175 36 7 chr12 75339739 75340042 -68446413 + AluJo SINE Alu 1 312 0 370 242 55 123 chr12 75340061 75340184 -68446271 + L1MEd LINE L1 2138 2268 -3861 2078 130 7 0 chr12 75340184 75340485 -68445970 + AluSx SINE Alu 1 303 -9 370 242 55 123 chr12 75340485 75340985 -68445470 + L1MEd LINE L1 2268 2718 -3411 22 35 0 0 chr12 75341644 75341673 -68444782 + AT_rich Low_complexity Low_complexity 1 29 0 2328 82 3 0 chr12 75342929 75343223 -68443232 + AluSp SINE Alu 1 295 -18 191 138 0 0 chr12 75343538 75343567 -68442888 + MIR SINE MIR 123 151 -111 21 36 0 0 chr12 75343806 75343834 -68442621 + AT_rich Low_complexity Low_complexity 1 28 0 747 215 41 66 chr12 75343880 75344143 -68442312 + MLT1A1 LTR MaLR 1 269 -105 440 221 76 23 chr12 75344912 75345043 -68441412 - L1MB7 LINE L1 -24 6160 6023 21 0 0 0 chr12 75345084 75345105 -68441350 + AT_rich Low_complexity Low_complexity 1 21 0 2186 130 0 0 chr12 75345230 75345530 -68440925 - AluSx SINE Alu -12 300 1 1823 167 0 13 chr12 75345822 75346121 -68440334 - AluJo SINE Alu -17 295 1 254 264 36 114 chr12 75346433 75346504 -68439951 + L2 LINE L2 3176 3232 -81 2016 138 20 0 chr12 75346504 75346800 -68439655 - AluSx SINE Alu -10 302 1 254 264 36 114 chr12 75346800 75346868 -68439587 + L2 LINE L2 3232 3304 -9 226 0 0 0 chr12 75346926 75346951 -68439504 + (TTTA)n Simple_repeat Simple_repeat 2 132 0 2080 132 11 0 chr12 75346951 75347232 -68439223 - AluSx SINE Alu -28 284 1 1229 287 77 17 chr12 75347274 75347786 -68438669 + L2 LINE L2 2510 3052 -261 670 215 0 15 chr12 75349090 75349225 -68437230 + FLAM_A SINE Alu 1 133 0 2356 85 0 0 chr12 75349548 75349843 -68436612 + AluY SINE Alu 1 295 -16 2033 114 10 14 chr12 75350414 75350704 -68435751 + AluSq SINE Alu 1 289 -24 186 43 0 0 chr12 75350905 75350928 -68435527 + (GGAAA)n Simple_repeat Simple_repeat 4 26 0 5528 191 118 10 chr12 75351448 75352710 -68433745 + L1PA13 LINE L1 1 1398 -5389 8552 186 14 3 chr12 75352712 75354332 -68432123 + L1PA13 LINE L1 2516 4117 -2697 297 0 0 0 chr12 75354332 75354365 -68432090 + (CA)n Simple_repeat Simple_repeat 2 34 0 8552 186 14 3 chr12 75354365 75354642 -68431813 + L1PA13 LINE L1 4117 4390 -2424 2536 65 3 0 chr12 75354642 75354951 -68431504 + AluY SINE Alu 1 310 -1 8552 186 14 3 chr12 75354951 75357141 -68429314 + L1PA13 LINE L1 4390 6795 -19 2105 85 67 0 chr12 75357543 75357825 -68428630 - AluSp SINE Alu -12 301 1 1894 131 3 24 chr12 75357831 75358122 -68428333 - AluJb SINE Alu -17 295 11 2092 99 3 10 chr12 75359095 75359407 -68427048 - Tigger4(Zombi) DNA MER2_type 0 2731 2422 1149 168 19 0 chr12 75359411 75359620 -68426835 - Tigger4(Zombi) DNA MER2_type -2511 220 8 2435 51 3 0 chr12 75360039 75360359 -68426096 + AluSp SINE Alu 1 321 0 492 290 164 5 chr12 75361369 75361576 -68424879 + MIR SINE MIR 2 241 -21 2176 123 3 0 chr12 75361711 75362004 -68424451 - AluSx SINE Alu -18 294 1 462 281 132 51 chr12 75362036 75362446 -68424009 + LTR67 LTR ERVL 111 553 -4 29 47 0 0 chr12 75362580 75362623 -68423832 + AT_rich Low_complexity Low_complexity 1 43 0 182 229 125 0 chr12 75363490 75363538 -68422917 - MIR SINE MIR -65 143 90 276 281 133 69 chr12 75364679 75364882 -68421573 - MIR SINE MIR -6 256 41 321 254 88 0 chr12 75365051 75365165 -68421290 - L1ME LINE L1 -392 5729 5606 183 314 157 0 chr12 75365239 75365309 -68421146 + L2 LINE L2 3186 3266 -6 362 239 106 0 chr12 75365754 75365867 -68420588 - MIR SINE MIR -28 234 110 24 32 0 0 chr12 75366050 75366081 -68420374 + AT_rich Low_complexity Low_complexity 1 31 0 315 197 106 101 chr12 75366704 75366892 -68419563 + HAL1 LINE L1 49 237 -2270 1172 150 47 17 chr12 75366901 75367134 -68419321 + L1MB3 LINE L1 5944 6183 0 276 326 22 15 chr12 75367265 75367400 -68419055 + HAL1 LINE L1 418 553 -1954 824 254 142 35 chr12 75367408 75367958 -68418497 + HAL1 LINE L1 1889 2497 -10 2562 64 3 0 chr12 75368500 75368812 -68417643 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 75368971 75368994 -68417461 + AT_rich Low_complexity Low_complexity 1 23 0 207 186 235 78 chr12 75369247 75369349 -68417106 - L2 LINE L2 -14 3299 3182 2972 96 29 2 chr12 75369379 75369794 -68416661 - MSTC LTR MaLR 0 428 3 1478 189 40 18 chr12 75371396 75371516 -68414939 + AluJo SINE Alu 1 117 -195 270 81 0 0 chr12 75371516 75371553 -68414902 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 1478 189 40 18 chr12 75371553 75371707 -68414748 + AluJo SINE Alu 117 281 -31 28 79 0 0 chr12 75371882 75371945 -68414510 + AT_rich Low_complexity Low_complexity 1 63 0 234 271 0 0 chr12 75372000 75372048 -68414407 - Tigger5 DNA MER2_type -1 2322 2275 1103 140 0 0 chr12 75372174 75372331 -68414124 - AluSx SINE Alu -14 298 142 403 311 45 0 chr12 75372369 75372501 -68413954 + L2 LINE L2 3158 3295 -18 966 121 0 0 chr12 75372501 75372633 -68413822 - AluSx SINE Alu -181 132 1 1703 215 139 44 chr12 75373054 75373621 -68412834 + MLT1E3 LTR MaLR 2 622 -2 231 61 0 0 chr12 75373655 75373688 -68412767 + (CTG)n Simple_repeat Simple_repeat 2 34 0 444 321 80 0 chr12 75373809 75373996 -68412459 + L2 LINE L2 3106 3307 -6 811 160 8 0 chr12 75374021 75374152 -68412303 + FLAM_C SINE Alu 1 132 -1 2100 129 0 0 chr12 75374289 75374605 -68411850 + AluSx SINE Alu 1 316 0 703 206 73 0 chr12 75376344 75376548 -68409907 - MER113 DNA MER1_type? -228 293 75 420 317 159 14 chr12 75377481 75377689 -68408766 + MIR SINE MIR 25 262 0 1263 89 103 28 chr12 75377882 75378001 -68408454 + MER30 DNA MER1_type 1 110 -120 333 0 0 0 chr12 75378001 75378038 -68408417 + (CA)n Simple_repeat Simple_repeat 2 38 0 1263 89 103 28 chr12 75378038 75378132 -68408323 + MER30 DNA MER1_type 110 230 0 792 234 129 38 chr12 75378664 75378919 -68407536 + L2 LINE L2 2713 2943 -370 1854 188 28 3 chr12 75378919 75379275 -68407180 + MLT1A1 LTR MaLR 1 365 0 792 234 129 38 chr12 75379275 75379499 -68406956 + L2 LINE L2 2943 3313 0 246 302 108 16 chr12 75379557 75379686 -68406769 + MIR SINE MIR 102 242 -20 2186 84 3 7 chr12 75380104 75380401 -68406054 - AluY SINE Alu -15 296 1 1146 150 16 141 chr12 75380605 75380918 -68405537 - AluJo SINE Alu -6 306 33 2210 120 10 0 chr12 75381485 75381786 -68404669 + AluSq SINE Alu 1 304 -9 438 200 12 0 chr12 75381845 75381930 -68404525 + MER96 DNA MER1_type? 85 170 -5 * 635 176 9 0 chr12 75381927 75382035 -68404420 + MER20 DNA MER1_type 109 217 -2 487 283 150 0 chr12 75382052 75382239 -68404216 + MIR SINE MIR 48 262 0 2455 88 0 0 chr12 75382808 75383116 -68403339 - AluSp SINE Alu -4 309 2 1283 170 90 52 chr12 75384756 75385045 -68401410 + AluJo SINE Alu 3 302 0 236 202 143 12 chr12 75385064 75385148 -68401307 + L1ME LINE L1 5725 5819 -302 1694 174 3 13 chr12 75385158 75385456 -68400999 + AluJb SINE Alu 1 295 -17 2173 113 3 0 chr12 75386865 75387157 -68399298 - AluSx SINE Alu -9 303 11 491 264 13 52 chr12 75387369 75387524 -68398931 + MIR SINE MIR 9 157 -105 13670 106 46 68 chr12 75387943 75390414 -68396041 - Tigger1 DNA MER2_type 0 2418 1 1876 137 53 0 chr12 75390789 75391073 -68395382 + AluSq SINE Alu 1 299 -14 2368 50 0 0 chr12 75391075 75391389 -68395066 + AluY SINE Alu 1 314 0 411 21 0 0 chr12 75391420 75391468 -68394987 + (TG)n Simple_repeat Simple_repeat 2 49 0 745 186 8 0 chr12 75391468 75391586 -68394869 - FLAM_A SINE Alu -14 119 1 2445 81 7 0 chr12 75392167 75392476 -68393979 + AluY SINE Alu 1 311 0 403 258 60 20 chr12 75392690 75392841 -68393614 + L1MD2 LINE L1 5555 5711 -410 22 0 0 0 chr12 75392854 75392876 -68393579 + AT_rich Low_complexity Low_complexity 1 22 0 876 225 173 53 chr12 75393120 75393537 -68392918 + L1MD2 LINE L1 5880 6346 -13 220 289 206 10 chr12 75393946 75394043 -68392412 + L2 LINE L2 3147 3262 -10 212 128 0 21 chr12 75394452 75394499 -68391956 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 838 220 103 33 chr12 75394604 75394904 -68391551 + L1MC4 LINE L1 7305 7625 -417 920 182 104 64 chr12 75394949 75394976 -68391479 + L1MC4 LINE L1 7751 7775 -267 1672 157 30 49 chr12 75394976 75395281 -68391174 + AluJo SINE Alu 1 299 -13 920 182 104 64 chr12 75395281 75395533 -68390922 + L1MC4 LINE L1 7775 8041 -1 740 228 74 113 chr12 75395648 75395933 -68390522 + L1MEd LINE L1 691 986 -1504 941 203 0 0 chr12 75395933 75396091 -68390364 + FAM SINE Alu 1 158 -17 740 228 74 113 chr12 75396091 75396116 -68390339 + L1MEd LINE L1 986 1010 -1480 1920 167 15 0 chr12 75396116 75396458 -68389997 + L1MB4 LINE L1 5834 6180 0 740 228 74 113 chr12 75396458 75396869 -68389586 + L1MEd LINE L1 1010 1457 -1033 2304 112 3 0 chr12 75396869 75397174 -68389281 + AluSc SINE Alu 3 308 -1 740 228 74 113 chr12 75397174 75397410 -68389045 + L1MEd LINE L1 1457 1701 -789 261 0 0 0 chr12 75397797 75397826 -68388629 + (CA)n Simple_repeat Simple_repeat 2 30 0 217 108 54 0 chr12 75397972 75398009 -68388446 - L2 LINE L2 -5 3308 3270 976 189 54 0 chr12 75398080 75398265 -68388190 - MER3 DNA MER1_type 0 209 15 23 54 0 0 chr12 75398302 75398339 -68388116 + AT_rich Low_complexity Low_complexity 1 37 0 2422 60 0 3 chr12 75398510 75398833 -68387622 + AluY SINE Alu 1 322 0 2588 45 0 7 chr12 75398961 75399269 -68387186 + AluY SINE Alu 1 306 -5 26 0 0 0 chr12 75399316 75399342 -68387113 + AT_rich Low_complexity Low_complexity 1 26 0 1013 52 0 15 chr12 75399436 75399570 -68386885 + AluY SINE Alu 175 306 -5 26 0 0 0 chr12 75399617 75399643 -68386812 + AT_rich Low_complexity Low_complexity 1 26 0 250 328 139 8 chr12 75401102 75401224 -68385231 - MIR SINE MIR -118 144 7 305 301 44 61 chr12 75402381 75402610 -68383845 + L2 LINE L2 2150 2374 -940 2309 90 0 0 chr12 75402673 75402962 -68383493 + AluSc SINE Alu 1 289 -20 386 302 163 14 chr12 75403488 75403703 -68382752 + MIR SINE MIR 2 248 -14 204 109 36 36 chr12 75404096 75404151 -68382304 + (CATAG)n Simple_repeat Simple_repeat 3 57 0 1877 162 10 0 chr12 75404422 75404725 -68381730 + AluJo SINE Alu 2 307 -5 230 221 287 0 chr12 75406632 75406754 -68379701 - MIR3 SINE MIR -49 159 3 539 244 30 7 chr12 75406771 75406906 -68379549 - MIR SINE MIR -1 261 124 2978 3 0 0 chr12 75407318 75407634 -68378821 + AluYb8 SINE Alu 1 316 -2 191 273 118 45 chr12 75408236 75408346 -68378109 - MIR SINE MIR -134 128 11 572 115 23 11 chr12 75408348 75408435 -68378020 - MER5A DNA MER1_type 0 189 102 * 966 160 18 12 chr12 75408428 75408597 -68377858 + MER5A DNA MER1_type 20 189 0 500 269 146 32 chr12 75408852 75409071 -68377384 - MIR SINE MIR -6 256 13 216 396 59 0 chr12 75409077 75409178 -68377277 + MIR SINE MIR 33 139 -123 405 276 49 44 chr12 75410189 75410392 -68376063 + Charlie8 DNA MER1_type 32 235 -2182 2301 107 0 3 chr12 75410597 75410897 -68375558 - AluSx SINE Alu -13 299 1 27 0 0 0 chr12 75411072 75411099 -68375356 + AT_rich Low_complexity Low_complexity 1 27 0 333 298 12 0 chr12 75411124 75411208 -68375247 - MIR SINE MIR -171 91 7 227 290 0 56 chr12 75411871 75411978 -68374477 + MIR SINE MIR 116 216 -46 674 300 31 26 chr12 75412171 75412398 -68374057 + MIR SINE MIR 27 254 -8 1637 177 53 0 chr12 75412621 75412904 -68373551 - AluJb SINE Alu -14 298 1 748 207 0 0 chr12 75413157 75413273 -68373182 - FLAM_A SINE Alu -17 116 1 2486 75 0 28 chr12 75413613 75413935 -68372520 - AluSq SINE Alu 0 313 1 964 146 6 37 chr12 75415372 75415507 -68370948 + AluSg/x SINE Alu 146 277 -33 354 23 0 0 chr12 75415507 75415550 -68370905 + (CATA)n Simple_repeat Simple_repeat 2 44 0 964 146 6 37 chr12 75415550 75415578 -68370877 + AluSg/x SINE Alu 277 304 -6 234 91 0 0 chr12 75415659 75415692 -68370763 + (TG)n Simple_repeat Simple_repeat 2 34 0 209 333 0 0 chr12 75415854 75415920 -68370535 - L2 LINE L2 -631 2683 2618 21 57 0 0 chr12 75415965 75416000 -68370455 + AT_rich Low_complexity Low_complexity 1 35 0 616 211 34 7 chr12 75416053 75416200 -68370255 + L2 LINE L2 2082 2232 -1082 271 203 29 43 chr12 75416317 75416386 -68370069 - MER69A DNA AcHobo -74 103 36 262 222 0 19 chr12 75417629 75417683 -68368772 + GA-rich Low_complexity Low_complexity 2 54 0 450 215 131 94 chr12 75417857 75418006 -68368449 + L1ME4a LINE L1 4980 5122 -1117 2259 106 7 0 chr12 75418006 75418309 -68368146 + AluSq SINE Alu 1 305 -8 450 215 131 94 chr12 75418309 75418440 -68368015 + L1ME4a LINE L1 5122 5247 -992 1828 186 0 3 chr12 75418440 75418751 -68367704 + AluJb SINE Alu 1 310 -2 450 215 131 94 chr12 75418751 75418956 -68367499 + L1ME4a LINE L1 5247 5496 -743 1208 175 26 136 chr12 75419197 75419381 -68367074 + L1MC4 LINE L1 6460 6582 -1460 2149 116 3 0 chr12 75419381 75419675 -68366780 + AluSx SINE Alu 1 295 -17 1208 175 26 136 chr12 75419675 75419873 -68366582 + L1MC4 LINE L1 6582 6800 -1242 1514 334 50 42 chr12 75419874 75420600 -68365855 + L2 LINE L2 2155 2874 -439 1953 131 28 7 chr12 75420600 75420882 -68365573 + AluSx SINE Alu 1 288 -24 1514 334 50 42 chr12 75420882 75421042 -68365413 + L2 LINE L2 2874 3031 -282 2240 111 3 0 chr12 75421042 75421340 -68365115 + AluSq SINE Alu 3 301 -12 1514 334 50 42 chr12 75421340 75421596 -68364859 + L2 LINE L2 3031 3305 -8 2077 165 23 27 chr12 75471670 75472110 -68314345 + L1MB8 LINE L1 5671 6095 -85 2356 95 0 7 chr12 75472110 75472415 -68314040 + AluSx SINE Alu 1 303 -9 2077 165 23 27 chr12 75472415 75472468 -68313987 + L1MB8 LINE L1 6095 6147 -33 304 189 90 0 chr12 75472425 75472536 -68313919 + L1ME4a LINE L1 5830 5950 -171 * 268 202 91 10 chr12 75472553 75472652 -68313803 + L1ME4a LINE L1 6014 6120 -1 2234 101 3 3 chr12 75473022 75473318 -68313137 + AluSq SINE Alu 2 297 -16 807 156 8 0 chr12 75473642 75473770 -68312685 - FLAM_C SINE Alu -4 129 1 1498 225 25 25 chr12 75473770 75474210 -68312245 - L1MB8 LINE L1 -68 6110 5671 364 326 104 7 chr12 75474548 75474692 -68311763 + MIR3 SINE MIR 38 195 -13 22 70 0 0 chr12 75474955 75474998 -68311457 + AT_rich Low_complexity Low_complexity 1 43 0 430 193 32 91 chr12 75475525 75475712 -68310743 - L1MC4a LINE L1 -1976 5832 5657 288 300 33 0 chr12 75475843 75475933 -68310522 - L1MC4a LINE L1 -522 5599 5507 307 150 0 0 chr12 75475993 75476053 -68310402 + MER53 DNA DNA 9 68 -121 41 0 0 0 chr12 75476205 75476246 -68310209 + GC_rich Low_complexity Low_complexity 1 41 0 748 301 0 0 chr12 75476392 75476538 -68309917 + C-rich Low_complexity Low_complexity 1 146 0 1983 132 3 21 chr12 75477139 75477428 -68309027 + AluSx SINE Alu 1 284 -28 2083 120 3 7 chr12 75477490 75477789 -68308666 - AluSx SINE Alu -14 298 1 424 277 126 0 chr12 75477860 75477979 -68308476 + MIR SINE MIR 43 176 -86 937 162 14 0 chr12 75477991 75478139 -68308316 - AluSg/x SINE Alu -26 286 137 285 275 0 0 chr12 75478140 75478209 -68308246 + MIR SINE MIR 173 241 -21 221 304 45 27 chr12 75478562 75478674 -68307781 + MIR SINE MIR 105 218 -44 1571 86 5 18 chr12 75478689 75478909 -68307546 + AluY SINE Alu 95 311 0 935 278 105 2 chr12 75479233 75479632 -68306823 - L1MC4a LINE L1 -1868 5940 5501 363 231 118 72 chr12 75479679 75479840 -68306615 - L1MC4a LINE L1 -750 5428 5252 1859 133 23 41 chr12 75479840 75480185 -68306270 + MER44D DNA MER2_type 1 609 0 363 231 118 72 chr12 75480185 75480286 -68306169 - L1MC4a LINE L1 -926 5252 5157 239 310 110 10 chr12 75480470 75480570 -68305885 - L2 LINE L2 -221 3051 2942 642 229 149 10 chr12 75480998 75481199 -68305256 + MIR SINE MIR 34 262 0 788 215 145 19 chr12 75481306 75481520 -68304935 + MIR SINE MIR 22 262 0 255 267 56 0 chr12 75481560 75481650 -68304805 - L1ME LINE L1 -508 5613 5519 981 208 4 10 chr12 75481698 75481943 -68304512 + AluJo SINE Alu 6 297 -15 378 286 46 29 chr12 75481951 75482126 -68304329 - L1ME LINE L1 -2349 5459 5282 2558 77 3 0 chr12 75482812 75483124 -68303331 + AluSp SINE Alu 1 313 0 326 275 0 0 chr12 75483438 75483518 -68302937 - MIR SINE MIR -5 257 178 2262 136 0 0 chr12 75483709 75484019 -68302436 + AluJb SINE Alu 1 310 -2 353 242 134 13 chr12 75484022 75484171 -68302284 + L1ME4a LINE L1 5732 5898 -223 335 309 0 11 chr12 75484180 75484274 -68302181 + L1ME4a LINE L1 5342 5434 -687 1200 209 0 5 chr12 75484279 75484494 -68301961 + AluJb SINE Alu 85 298 -14 803 240 113 10 chr12 75484544 75484844 -68301611 + L1ME4a LINE L1 5495 5825 -296 3070 184 62 27 chr12 75484943 75485650 -68300805 + MER44D DNA MER2_type 2 605 0 1238 227 35 59 chr12 75486108 75486514 -68299941 - MSTD LTR MaLR 0 396 1 725 332 106 31 chr12 75486517 75487102 -68299353 - L2 LINE L2 -876 2438 1810 2253 122 0 0 chr12 75487224 75487527 -68298928 - AluSx SINE Alu -7 305 3 1142 197 100 41 chr12 75487690 75487801 -68298654 + MER58B DNA MER1_type 1 104 -2316 2375 107 10 0 chr12 75487801 75488110 -68298345 + AluSx SINE Alu 1 312 0 1142 197 100 41 chr12 75488110 75488318 -68298137 + MER58B DNA MER1_type 104 339 -2 2260 138 3 0 chr12 75489608 75489920 -68296535 - 7SLRNA srpRNA srpRNA -6 314 2 301 194 0 125 chr12 75490068 75490115 -68296340 - L1M LINE L1 -2379 5429 5378 825 112 0 70 chr12 75490115 75490258 -68296197 - FLAM_C SINE Alu 0 133 1 301 194 0 125 chr12 75490258 75490354 -68296101 - L1M LINE L1 -2430 5378 5304 211 209 30 15 chr12 75490372 75490439 -68296016 + (TA)n Simple_repeat Simple_repeat 2 69 0 359 288 196 0 chr12 75490489 75490642 -68295813 + MIR SINE MIR 2 184 -78 4420 139 68 23 chr12 75490692 75491643 -68294812 - L1MB7 LINE L1 -19 6165 5258 195 69 0 0 chr12 75491643 75491672 -68294783 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2145 97 11 0 chr12 75491675 75491953 -68294502 - AluY SINE Alu -30 281 1 4420 139 68 23 chr12 75491953 75491991 -68294464 - L1MB7 LINE L1 -927 5257 5222 2099 132 3 7 chr12 75491991 75492287 -68294168 - AluJo SINE Alu -17 295 1 4420 139 68 23 chr12 75492287 75492333 -68294122 - L1MB7 LINE L1 -962 5222 5096 1918 201 60 29 chr12 75492330 75492876 -68293579 - L1MB7 LINE L1 -1724 4422 3860 * 1932 133 76 19 chr12 75492879 75493106 -68293349 - MLT1B LTR MaLR 0 390 133 2690 91 8 3 chr12 75493106 75493468 -68292987 - THE1B LTR MaLR 0 364 1 1932 133 76 19 chr12 75493468 75493609 -68292846 - MLT1B LTR MaLR -257 133 1 613 184 15 15 chr12 75493609 75493745 -68292710 - L1MB7 LINE L1 -2285 3861 3726 272 284 112 59 chr12 75493776 75493945 -68292510 - MIR SINE MIR -42 220 43 351 0 0 0 chr12 75494423 75494462 -68291993 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 267 253 5 0 chr12 75494631 75494734 -68291721 - L1M LINE L1 -794 5376 5272 242 287 0 2 chr12 75494864 75494925 -68291530 + MER5A DNA MER1_type 31 95 -88 294 223 69 62 chr12 75495249 75495379 -68291076 - L1MC5 LINE L1 -48 7913 7783 1555 149 25 97 chr12 75495591 75495912 -68290543 - AluJo SINE Alu -14 298 1 180 0 0 0 chr12 75495959 75495979 -68290476 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2150 170 42 23 chr12 75496546 75497028 -68289427 - L1M4 LINE L1 -386 5798 5308 335 228 83 28 chr12 75497054 75497199 -68289256 + MLT1K LTR MaLR 366 518 -70 2323 114 0 0 chr12 75497765 75498063 -68288392 - AluSx SINE Alu -14 298 1 2249 257 80 23 chr12 75498767 75499276 -68287179 + L2 LINE L2 1807 2377 -937 1451 212 14 27 chr12 75499276 75499573 -68286882 - AluJo SINE Alu -19 293 1 2249 257 80 23 chr12 75499573 75499841 -68286614 + L2 LINE L2 2377 2628 -686 13265 151 79 57 chr12 75499847 75500776 -68285679 + L1MA3 LINE L1 711 1619 -6105 7411 94 10 22 chr12 75500776 75501860 -68284595 + MER11C LTR ERVK 1 1071 0 13265 151 79 57 chr12 75501860 75502810 -68283645 + L1MA3 LINE L1 1619 2547 -5177 1689 140 0 90 chr12 75502810 75503131 -68283324 + AluJb SINE Alu 1 292 -20 13265 151 79 57 chr12 75503131 75504991 -68281464 + L1MA3 LINE L1 2547 4366 -3358 743 153 0 8 chr12 75504991 75505115 -68281340 + FLAM_C SINE Alu 1 123 -10 13265 151 79 57 chr12 75505115 75506163 -68280292 + L1MA3 LINE L1 4366 5390 -2334 2107 117 3 0 chr12 75506163 75506467 -68279988 - AluSx SINE Alu 0 305 1 13265 151 79 57 chr12 75506467 75506637 -68279818 + L1MA3 LINE L1 5390 5555 -2169 9099 55 25 128 chr12 75506637 75508149 -68278306 + SVA Other Other 31 1386 0 13265 151 79 57 chr12 75508149 75509714 -68276741 + L1MA3 LINE L1 5555 7391 -333 2171 120 0 10 chr12 75509714 75510014 -68276441 + AluSx SINE Alu 1 297 -15 13265 151 79 57 chr12 75510014 75510354 -68276101 + L1MA3 LINE L1 7391 7722 -2 1292 222 103 60 chr12 75510356 75510948 -68275507 + L2 LINE L2 2698 3313 0 269 361 38 0 chr12 75510987 75511120 -68275335 + MER117 DNA MER1_type 1 138 -59 310 261 147 19 chr12 75513115 75513272 -68273183 + HAL1 LINE L1 1580 1756 -751 663 200 0 0 chr12 75513482 75513592 -68272863 - FLAM_A SINE Alu -19 123 14 1364 184 149 20 chr12 75513593 75513951 -68272504 + MLT1C LTR MaLR 24 436 -31 1806 167 7 0 chr12 75514888 75515181 -68271274 + AluJo SINE Alu 3 297 -15 275 307 85 71 chr12 75515219 75515512 -68270943 + L3 LINE CR1 1135 1515 -62 302 309 163 16 chr12 75515532 75515655 -68270800 + MER5B DNA MER1_type 1 141 -37 427 265 91 0 chr12 75516010 75516142 -68270313 + MIR SINE MIR 45 188 -74 2233 101 3 3 chr12 75517099 75517406 -68269049 - AluSq SINE Alu -6 307 1 2254 95 3 3 chr12 75517655 75517951 -68268504 + AluSq SINE Alu 2 297 -16 799 156 8 0 chr12 75518275 75518403 -68268052 - FLAM_C SINE Alu -4 129 1 2208 152 25 25 chr12 75518403 75518843 -68267612 - L1MB8 LINE L1 -68 6110 5671 408 235 12 12 chr12 75518869 75518954 -68267501 - L2 LINE L2 0 3313 3229 2595 36 0 3 chr12 75519281 75519583 -68266872 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 75519793 75519814 -68266641 + AT_rich Low_complexity Low_complexity 1 21 0 1983 108 0 0 chr12 75520302 75520560 -68265895 + AluSx SINE Alu 47 304 -8 255 241 54 18 chr12 75520610 75520722 -68265733 - MER113 DNA MER1_type? -405 116 1 2181 75 3 62 chr12 75520983 75521303 -68265152 + AluSp SINE Alu 1 301 -12 243 0 0 0 chr12 75521303 75521330 -68265125 + (CA)n Simple_repeat Simple_repeat 2 28 0 1583 139 73 4 chr12 75521697 75521956 -68264499 + AluJb SINE Alu 1 277 -35 400 263 122 24 chr12 75522502 75522715 -68263740 + L1ME LINE L1 5585 5818 -303 251 247 0 68 chr12 75522807 75522880 -68263575 - MER5A DNA MER1_type -118 71 4 1631 171 20 20 chr12 75523153 75523445 -68263010 - AluJb SINE Alu -19 293 2 3170 150 95 27 chr12 75523502 75523915 -68262540 + L1MB4 LINE L1 5434 5912 -268 2493 61 0 0 chr12 75523915 75524210 -68262245 + AluY SINE Alu 1 295 -16 3170 150 95 27 chr12 75524210 75524471 -68261984 + L1MB4 LINE L1 5912 6154 -26 521 290 273 8 chr12 75524549 75524945 -68261510 - L2 LINE L2 -2 3311 2811 1279 201 32 4 chr12 75524946 75525195 -68261260 + AluJb SINE Alu 1 256 -56 190 247 37 37 chr12 75525207 75525288 -68261167 - L2 LINE L2 -483 2831 2751 776 183 35 7 chr12 75525291 75525433 -68261022 + FRAM SINE Alu 1 146 -30 331 250 192 68 chr12 75525586 75525878 -68260577 - L2 LINE L2 -920 2394 2067 2036 48 104 11 chr12 75526360 75526630 -68259825 - AluY SINE Alu -16 295 1 1512 166 108 7 chr12 75527259 75527537 -68258918 + AluJb SINE Alu 1 306 -6 1842 152 7 3 chr12 75527618 75527747 -68258708 + AluSx SINE Alu 3 130 -182 245 50 0 25 chr12 75527747 75527787 -68258668 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1842 152 7 3 chr12 75527787 75527947 -68258508 + AluSx SINE Alu 130 293 -19 304 305 150 29 chr12 75528344 75528669 -68257786 + L2 LINE L2 2654 3018 -254 264 59 0 0 chr12 75531175 75531209 -68255246 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr12 75535011 75535040 -68251415 + AT_rich Low_complexity Low_complexity 1 29 0 2264 98 3 13 chr12 75538176 75538481 -68247974 + AluSp SINE Alu 3 304 -9 25 0 0 0 chr12 75540971 75540996 -68245459 + AT_rich Low_complexity Low_complexity 1 25 0 1368 175 18 40 chr12 75542496 75542770 -68243685 - AluJb SINE Alu -19 293 26 456 326 153 33 chr12 75543085 75543167 -68243288 - L2 LINE L2 0 3313 3242 749 192 8 0 chr12 75543167 75543297 -68243158 + AluJo SINE Alu 1 131 -171 456 326 153 33 chr12 75543297 75543774 -68242681 - L2 LINE L2 -71 3242 2681 998 185 0 0 chr12 75547486 75547643 -68238812 + AluJo SINE Alu 136 292 -20 1855 151 54 26 chr12 75547706 75548130 -68238325 - L1MB8 LINE L1 -30 6148 5713 * 3599 185 42 14 chr12 75548125 75548243 -68238212 + L1MB7 LINE L1 5383 5496 -688 2141 94 14 4 chr12 75548243 75548544 -68237911 + AluSg SINE Alu 1 304 0 3599 185 42 14 chr12 75548544 75549190 -68237265 + L1MB7 LINE L1 5496 6169 -15 963 257 234 9 chr12 75549409 75550056 -68236399 - L2 LINE L2 -4 3309 2523 337 264 124 27 chr12 75550066 75550324 -68236131 + L1ME LINE L1 5543 5825 -296 198 0 0 0 chr12 75550379 75550401 -68236054 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 404 243 111 35 chr12 75551450 75551594 -68234861 - MIR SINE MIR -55 207 53 1221 178 25 87 chr12 75551722 75552008 -68234447 + AluJo SINE Alu 26 293 -19 24 0 0 0 chr12 75552166 75552190 -68234265 + AT_rich Low_complexity Low_complexity 1 24 0 2430 88 3 0 chr12 75553135 75553440 -68233015 + AluSx SINE Alu 2 307 -5 762 138 81 0 chr12 75553475 75553598 -68232857 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr12 75553638 75553663 -68232792 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 75554757 75554788 -68231667 + AT_rich Low_complexity Low_complexity 1 31 0 2294 55 0 77 chr12 75554788 75555115 -68231340 - AluY SINE Alu -9 302 1 315 142 67 117 chr12 75556890 75557010 -68229445 - MER106A DNA MER1_type -4 232 119 823 153 0 22 chr12 75557115 75557252 -68229203 + AluJo SINE Alu 1 134 -178 1988 154 0 3 chr12 75557984 75558276 -68228179 - AluSx SINE Alu -21 291 1 924 129 99 0 chr12 75558541 75558712 -68227743 - MER44D DNA MER2_type -1 704 517 1126 108 149 14 chr12 75558740 75558954 -68227501 + Tigger3b DNA MER2_type 54 296 -935 837 135 8 23 chr12 75558965 75559098 -68227357 - FLAM_C SINE Alu -7 136 6 1846 99 108 78 chr12 75559105 75559384 -68227071 + Tigger3b DNA MER2_type 280 549 -2479 604 189 31 39 chr12 75559384 75559511 -68226944 + FLAM_C SINE Alu 1 126 -7 1846 99 108 78 chr12 75559511 75559556 -68226899 + Tigger3b DNA MER2_type 549 591 -2437 2140 124 10 0 chr12 75559556 75559855 -68226600 + AluSx SINE Alu 1 302 -10 1846 99 108 78 chr12 75559855 75559963 -68226492 + Tigger3b DNA MER2_type 591 726 -505 1254 191 71 16 chr12 75559965 75560217 -68226238 + AluJb SINE Alu 1 266 -46 2545 130 71 18 chr12 75560231 75560722 -68225733 + Tigger3b DNA MER2_type 716 1232 0 556 194 86 0 chr12 75560722 75560861 -68225594 - MER44D DNA MER2_type -188 421 1 202 244 0 0 chr12 75560936 75560981 -68225474 + L2 LINE L2 3228 3272 0 1886 117 59 0 chr12 75560982 75561255 -68225200 - AluSx SINE Alu -20 292 4 346 305 128 70 chr12 75563720 75564352 -68222103 - L1M2 LINE L1 -5828 1021 353 189 0 0 0 chr12 75564453 75564474 -68221981 + (CCG)n Simple_repeat Simple_repeat 2 22 0 412 265 22 37 chr12 75565219 75565355 -68221100 - MIR3 SINE MIR -7 201 68 1723 119 42 3 chr12 75565520 75565805 -68220650 + MER46B DNA MER2_type 2 172 -64 352 253 45 94 chr12 75565850 75566052 -68220403 + MIR SINE MIR 7 198 -64 720 204 102 25 chr12 75566182 75566378 -68220077 + MLT1D LTR MaLR 2 212 -293 1994 135 3 14 chr12 75566438 75566734 -68219721 + AluJb SINE Alu 7 299 -13 724 254 40 13 chr12 75566746 75567049 -68219406 - L1MEc LINE L1 -4851 1459 1149 2265 109 3 0 chr12 75567049 75567342 -68219113 + AluSq SINE Alu 1 294 -19 394 114 32 38 chr12 75567342 75567500 -68218955 + (TA)n Simple_repeat Simple_repeat 1 157 0 22 0 0 0 chr12 75567508 75567530 -68218925 + AT_rich Low_complexity Low_complexity 1 22 0 419 109 27 55 chr12 75567543 75567726 -68218729 + (TA)n Simple_repeat Simple_repeat 2 179 0 366 136 34 34 chr12 75567741 75567917 -68218538 + (TA)n Simple_repeat Simple_repeat 2 177 0 381 258 53 73 chr12 75567954 75568349 -68218106 - L1MEc LINE L1 -4999 1120 734 994 195 0 0 chr12 75569028 75569192 -68217263 + FRAM SINE Alu 1 164 -2 22 0 0 30 chr12 75569192 75569211 -68217244 + AT_rich Low_complexity Low_complexity 1 20 -12 2328 107 0 0 chr12 75569211 75569511 -68216944 + AluSg SINE Alu 1 300 -10 22 0 0 30 chr12 75569511 75569524 -68216931 + AT_rich Low_complexity Low_complexity 20 32 0 6166 106 30 15 chr12 75569744 75570835 -68215620 - L1MA1 LINE L1 0 6302 5202 2003 128 138 23 chr12 75570835 75571219 -68215236 - MSTA LTR MaLR 0 428 1 6254 124 44 12 chr12 75571219 75572255 -68214200 - MSTA-int LTR MaLR 0 1580 512 249 77 26 0 chr12 75572406 75572445 -68214010 + Alu SINE Alu 1 40 -268 655 88 0 0 chr12 75572445 75572536 -68213919 + AluSp/q SINE Alu 208 298 -15 234 239 0 0 chr12 75572631 75572677 -68213778 - L2 LINE L2 -17 3255 3210 2064 246 109 43 chr12 75573586 75574406 -68212049 + HAL1 LINE L1 1256 2162 -345 2612 48 0 3 chr12 75574406 75574718 -68211737 + AluY SINE Alu 1 311 0 2064 246 109 43 chr12 75574718 75574955 -68211500 + HAL1 LINE L1 2162 2382 -125 225 0 0 0 chr12 75575655 75575680 -68210775 + (A)n Simple_repeat Simple_repeat 1 25 0 2142 74 25 3 chr12 75575680 75575964 -68210491 + AluSc SINE Alu 1 290 -19 358 263 0 0 chr12 75576012 75576092 -68210363 - L2 LINE L2 0 3313 3234 2096 184 137 17 chr12 75576308 75576850 -68209605 + L1MC4 LINE L1 6475 7081 -961 1837 160 7 0 chr12 75576854 75577154 -68209301 + AluJb SINE Alu 1 302 -10 2016 189 72 31 chr12 75577200 75577755 -68208700 + L1MC4 LINE L1 7325 7902 -140 1827 258 90 65 chr12 75577905 75578870 -68207585 - L2 LINE L2 -1173 2141 1153 2526 38 7 0 chr12 75579425 75579718 -68206737 + AluY SINE Alu 1 295 -16 2139 110 20 3 chr12 75580322 75580621 -68205834 - AluSx SINE Alu -8 304 1 22 56 0 0 chr12 75581014 75581050 -68205405 + AT_rich Low_complexity Low_complexity 1 36 0 430 296 61 0 chr12 75581281 75581477 -68204978 + L1ME4a LINE L1 5617 5824 -297 321 146 146 32 chr12 75581705 75581828 -68204627 + L1ME4a LINE L1 5974 6110 -11 22 35 0 0 chr12 75581883 75581912 -68204543 + AT_rich Low_complexity Low_complexity 1 29 0 392 326 73 14 chr12 75582062 75582143 -68204312 + L1MC5 LINE L1 7707 7782 -179 1661 135 69 40 chr12 75582143 75582404 -68204051 + AluJo SINE Alu 1 274 -38 216 67 0 0 chr12 75582404 75582434 -68204021 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1661 135 69 40 chr12 75582434 75582475 -68203980 + AluJo SINE Alu 274 312 0 392 326 73 14 chr12 75582475 75582611 -68203844 + L1MC5 LINE L1 7782 7937 -24 2031 153 7 3 chr12 75583911 75584219 -68202236 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr12 75585217 75585254 -68201201 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 75585370 75585391 -68201064 + AT_rich Low_complexity Low_complexity 1 21 0 2415 85 3 0 chr12 75585443 75585738 -68200717 - AluSc SINE Alu -13 296 1 386 258 93 36 chr12 75585818 75586012 -68200443 + MARNA DNA Mariner 44 248 -338 2453 91 10 0 chr12 75586136 75586445 -68200010 + AluSx SINE Alu 1 312 0 2085 117 0 0 chr12 75586451 75586763 -68199692 + AluSx SINE Alu 1 312 0 1566 167 43 20 chr12 75586822 75587127 -68199328 + AluJb SINE Alu 1 312 0 419 215 0 11 chr12 75587747 75587840 -68198615 + MARNA DNA Mariner 311 402 -184 1740 157 3 65 chr12 75587874 75588199 -68198256 - AluJo SINE Alu -7 305 1 2256 137 70 12 chr12 75588202 75588603 -68197852 - MSTA LTR MaLR -4 424 1 1314 194 105 0 chr12 75588603 75588850 -68197605 - AluJo SINE Alu -34 278 6 1374 295 82 50 chr12 75588850 75589816 -68196639 + HAL1 LINE L1 4 1000 -1507 372 317 108 6 chr12 75589844 75590011 -68196444 + MARNA DNA Mariner 384 567 -19 2012 152 7 0 chr12 75591017 75591327 -68195128 - AluJo SINE Alu 0 312 1 306 315 18 27 chr12 75593011 75593122 -68193333 - L2 LINE L2 -4 3309 3200 2415 73 0 3 chr12 75593417 75593720 -68192735 + AluY SINE Alu 1 302 -9 184 239 0 43 chr12 75594247 75594293 -68192162 - MIR SINE MIR -176 86 43 181 152 0 22 chr12 75594429 75594475 -68191980 + T-rich Low_complexity Low_complexity 2 46 0 894 197 0 13 chr12 75594481 75594633 -68191822 - FAM SINE Alu -34 151 2 211 111 0 93 chr12 75595102 75595156 -68191299 + (TTTTTA)n Simple_repeat Simple_repeat 6 54 0 21 57 0 0 chr12 75596561 75596596 -68189859 + AT_rich Low_complexity Low_complexity 1 35 0 2134 103 17 13 chr12 75596625 75596926 -68189529 - AluSx SINE Alu 0 312 11 1861 141 3 10 chr12 75597104 75597401 -68189054 + AluJb SINE Alu 5 299 -13 1895 134 22 4 chr12 75597550 75597826 -68188629 - AluJo SINE Alu -31 281 1 262 331 131 65 chr12 75597829 75598104 -68188351 - L2 LINE L2 -12 3260 2968 473 261 142 71 chr12 75598110 75598504 -68187951 + MLT1J1 LTR MaLR 1 422 -24 3825 151 47 4 chr12 75598530 75599247 -68187208 + L1MC3 LINE L1 7038 7785 0 1001 186 76 19 chr12 75599255 75599465 -68186990 + AluJo SINE Alu 88 309 -3 21 0 0 0 chr12 75599677 75599698 -68186757 + AT_rich Low_complexity Low_complexity 1 21 0 1589 155 21 3 chr12 75600016 75600306 -68186149 + LTR22 LTR ERVK 1 295 -285 735 169 169 115 chr12 75600306 75600733 -68185722 - LTR7 LTR ERV1 0 450 1 * 1408 140 19 109 chr12 75600733 75601048 -68185407 + LTR22 LTR ERVK 291 576 -4 3640 132 49 58 chr12 75601265 75601994 -68184461 + HERVK22 LTR ERVK 37 759 -6078 904 177 13 0 chr12 75602236 75602394 -68184061 + HERVK22 LTR ERVK 2330 2489 -4348 563 111 0 0 chr12 75602779 75602860 -68183595 + HERVK22 LTR ERVK 3474 3554 -3283 * 3513 136 18 6 chr12 75602855 75603507 -68182948 + HERVK22 LTR ERVK 2027 2652 -2610 3075 154 32 39 chr12 75603527 75604213 -68182242 + HERVK22 LTR ERVK 2626 3306 -1956 414 129 43 0 chr12 75604214 75604284 -68182171 + LTR22 LTR ERVK 508 580 0 371 209 47 161 chr12 75604996 75605207 -68181248 - L1ME3 LINE L1 -2 6160 5974 1313 40 0 0 chr12 75605207 75605358 -68181097 - AluY SINE Alu -10 301 151 1452 238 83 8 chr12 75605359 75605876 -68180579 - L1ME3 LINE L1 -179 5983 5428 3516 183 31 50 chr12 75605887 75605946 -68180509 - L1ME1 LINE L1 -8 6158 6099 2390 65 14 0 chr12 75605946 75606239 -68180216 - AluY SINE Alu -14 297 1 3516 183 31 50 chr12 75606239 75607095 -68179360 - L1ME1 LINE L1 -67 6099 5279 2436 86 0 0 chr12 75607095 75607399 -68179056 - AluSx SINE Alu -6 306 3 3516 183 31 50 chr12 75607399 75607743 -68178712 - L1ME1 LINE L1 -887 5279 4930 200 216 0 0 chr12 75607743 75607780 -68178675 + (CATA)n Simple_repeat Simple_repeat 2 38 0 233 291 27 0 chr12 75607876 75607986 -68178469 - L1MCc LINE L1 -5180 1243 1131 298 180 0 20 chr12 75608808 75608880 -68177575 - FLAM SINE Alu -8 125 66 1437 184 66 50 chr12 75609139 75609519 -68176936 - MLT1B LTR MaLR -4 386 1 290 316 93 27 chr12 75609607 75609772 -68176683 + MIR SINE MIR 2 176 -32 1868 232 25 36 chr12 75609833 75610358 -68176097 - MER74B LTR ERVL -59 563 45 2363 95 0 0 chr12 75610880 75611174 -68175281 + AluSg SINE Alu 1 294 -16 202 343 40 10 chr12 75611635 75611734 -68174721 + MIR SINE MIR 76 177 -85 11570 172 39 8 chr12 75611848 75613744 -68172711 + L1PA15 LINE L1 2837 4673 -1492 2028 182 0 0 chr12 75613744 75614052 -68172403 + AluJb SINE Alu 1 308 -4 11570 172 39 8 chr12 75614052 75614102 -68172353 + L1PA15 LINE L1 4673 4720 -1445 2361 102 0 0 chr12 75614102 75614395 -68172060 + AluSp SINE Alu 1 293 -20 11570 172 39 8 chr12 75614395 75614993 -68171462 + L1PA15 LINE L1 4720 5298 -867 2198 96 0 7 chr12 75614993 75615275 -68171180 + AluSc SINE Alu 1 280 -29 11570 172 39 8 chr12 75615275 75615580 -68170875 + L1PA15 LINE L1 5298 5592 -573 2574 103 11 0 chr12 75615580 75615938 -68170517 + THE1B LTR MaLR 1 362 -2 10790 96 29 24 chr12 75615940 75617512 -68168943 + THE1B-int LTR MaLR 1 1580 0 2788 80 6 3 chr12 75617512 75617874 -68168581 + THE1B LTR MaLR 1 363 -1 11570 172 39 8 chr12 75617874 75618367 -68168088 + L1PA15 LINE L1 5591 6155 -10 250 135 27 40 chr12 75618367 75618441 -68168014 + (TA)n Simple_repeat Simple_repeat 2 74 0 2105 195 30 46 chr12 75618472 75619173 -68167282 + L1MD2 LINE L1 4753 5448 -743 1984 124 50 18 chr12 75619205 75619544 -68166911 - MLT1A1 LTR MaLR -12 353 4 976 210 26 4 chr12 75619612 75619841 -68166614 + L1MD2 LINE L1 5601 5834 -525 * 7475 161 37 45 chr12 75619837 75621396 -68165059 - L1M2a LINE L1 -5007 2161 616 262 167 0 0 chr12 75621396 75621438 -68165017 - L1M2a LINE L1 -7124 44 3 1899 210 60 31 chr12 75621450 75621808 -68164647 + L1MD2 LINE L1 5814 6194 -165 1771 159 18 21 chr12 75621808 75622135 -68164320 + AluJo SINE Alu 1 326 0 1899 210 60 31 chr12 75622135 75622294 -68164161 + L1MD2 LINE L1 6194 6347 -12 28 0 0 0 chr12 75622317 75622345 -68164110 + AT_rich Low_complexity Low_complexity 1 28 0 1381 196 91 11 chr12 75622723 75622998 -68163457 - AluJo SINE Alu -13 299 3 401 141 35 12 chr12 75623163 75623248 -68163207 - L1MC/D LINE L1 -2009 5799 5713 679 274 124 73 chr12 75623280 75623788 -68162667 - MLT1H LTR MaLR -15 534 1 261 0 0 0 chr12 75623903 75623932 -68162523 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 10813 25 1 0 chr12 75623932 75625966 -68160489 - L1PA3 LINE L1 -8 6147 4111 268 230 98 69 chr12 75625969 75626243 -68160212 + L1MC4a LINE L1 4378 4659 -1487 1795 236 86 10 chr12 75626275 75626763 -68159692 + MLT1F1 LTR MaLR 43 567 0 245 314 35 35 chr12 75626834 75627117 -68159338 + L1MC4a LINE L1 4735 5017 -1129 1422 261 59 22 chr12 75627337 75627926 -68158529 + L1MC4a LINE L1 5284 5894 -1914 377 197 102 68 chr12 75627922 75628069 -68158386 + L1M4 LINE L1 1220 1371 -5488 * 342 296 55 3 chr12 75628169 75628476 -68157979 + L1M4 LINE L1 2654 2976 -3983 * 5049 204 22 2 chr12 75628472 75629665 -68156790 + L1M4 LINE L1 4375 5590 -1367 1388 185 29 19 chr12 75629665 75629978 -68156477 + L1M4 LINE L1 6270 6585 -410 582 266 0 0 chr12 75630005 75630129 -68156326 + FLAM_A SINE Alu 1 124 -9 1107 223 84 25 chr12 75630331 75630735 -68155720 - Zaphod DNA AcHobo -8 4023 3596 1517 247 114 5 chr12 75630800 75631246 -68155209 - Zaphod DNA AcHobo -3533 498 4 2053 165 68 42 chr12 75631521 75631976 -68154479 + MLT1C LTR MaLR 1 467 0 2283 95 0 3 chr12 75632558 75632854 -68153601 - AluY SINE Alu -16 295 1 709 202 0 0 chr12 75633050 75633164 -68153291 - FLAM_A SINE Alu -19 114 1 2301 156 25 37 chr12 75633247 75633286 -68153169 - MSTB LTR MaLR 0 426 388 2420 89 0 10 chr12 75633286 75633600 -68152855 + AluY SINE Alu 1 311 0 2301 156 25 37 chr12 75633600 75633991 -68152464 - MSTB LTR MaLR -38 388 1 5750 172 43 10 chr12 75633991 75635112 -68151343 - MSTB-int LTR MaLR 0 1651 494 884 117 0 0 chr12 75635100 75635245 -68151210 - MSTB-int LTR MaLR -1506 145 1 * 2089 172 61 22 chr12 75635245 75635652 -68150803 - MSTB LTR MaLR 0 426 4 2163 115 0 0 chr12 75635652 75635962 -68150493 + AluSc SINE Alu 1 310 0 5831 223 56 54 chr12 75635975 75638110 -68148345 - L1MB2 LINE L1 -42 5953 3824 1551 178 29 35 chr12 75638110 75638142 -68148313 - AluJb SINE Alu 0 312 281 189 0 0 0 chr12 75638142 75638163 -68148292 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1551 178 29 35 chr12 75638163 75638444 -68148011 - AluJb SINE Alu -31 281 1 5831 223 56 54 chr12 75638444 75639159 -68147296 - L1MB2 LINE L1 -2171 3824 3112 928 137 0 0 chr12 75639159 75639290 -68147165 - FLAM_C SINE Alu -1 132 2 5831 223 56 54 chr12 75639290 75640728 -68145727 - L1MB2 LINE L1 -2883 3112 1659 727 199 8 0 chr12 75640824 75640955 -68145500 + FLAM_A SINE Alu 2 133 0 1392 237 100 30 chr12 75641050 75641951 -68144504 - L1MB2 LINE L1 -4519 1382 388 435 320 60 49 chr12 75642109 75642456 -68143999 - L1MB2 LINE L1 -5532 359 9 1780 178 3 10 chr12 75642493 75642791 -68143664 + AluJb SINE Alu 5 300 -12 1927 309 116 44 chr12 75642791 75643215 -68143240 + L2 LINE L2 1802 2194 -1119 2368 68 3 3 chr12 75643215 75643508 -68142947 - AluY SINE Alu -18 293 1 1927 309 116 44 chr12 75643508 75644193 -68142262 + L2 LINE L2 2194 3060 -253 2290 103 3 7 chr12 75644193 75644495 -68141960 + AluSq SINE Alu 1 301 -12 1927 309 116 44 chr12 75644495 75644765 -68141690 + L2 LINE L2 3060 3309 -4 795 158 8 0 chr12 75645020 75645140 -68141315 + FLAM_A SINE Alu 1 121 -12 262 182 91 18 chr12 75645204 75645259 -68141196 + L2 LINE L2 3214 3272 0 21 0 0 0 chr12 75646218 75646239 -68140216 + AT_rich Low_complexity Low_complexity 1 21 0 589 247 124 26 chr12 75646538 75646610 -68139845 - L1ME3A LINE L1 -229 5935 5871 1872 98 0 0 chr12 75646610 75646856 -68139599 - AluSg1 SINE Alu -6 303 58 589 247 124 26 chr12 75646856 75647339 -68139116 - L1ME3A LINE L1 -293 5871 5313 592 238 107 18 chr12 75649009 75649337 -68137118 - L1ME3A LINE L1 -817 5329 4973 256 265 44 15 chr12 75649502 75649638 -68136817 - L1ME3A LINE L1 -1481 4665 4526 449 57 113 6 chr12 75650293 75650452 -68136003 + (TA)n Simple_repeat Simple_repeat 1 176 0 187 336 67 30 chr12 75852017 75852151 -67934304 - L2 LINE L2 -1239 2075 1937 22 0 0 0 chr12 75853660 75853682 -67932773 + AT_rich Low_complexity Low_complexity 1 22 0 7596 26 3 0 chr12 75853685 75854778 -67931677 - L1PA3 LINE L1 0 6155 5058 6083 24 0 0 chr12 75854778 75855493 -67930962 + L1PA3 LINE L1 4326 5040 -1106 197 292 146 11 chr12 75856580 75856669 -67929786 + MIR SINE MIR 45 145 -63 2058 127 0 7 chr12 75857280 75857579 -67928876 - AluSx SINE Alu -15 297 1 683 169 28 42 chr12 75857726 75857868 -67928587 - MER119 DNA MER1_type -4 579 440 1311 231 89 0 chr12 75857877 75858180 -67928275 - MER119 DNA MER1_type -249 334 5 2087 132 0 0 chr12 75859295 75859582 -67926873 + AluSx SINE Alu 1 287 -25 1910 166 0 0 chr12 75859842 75860138 -67926317 + AluJb SINE Alu 1 296 -16 26 50 0 0 chr12 75860359 75860399 -67926056 + AT_rich Low_complexity Low_complexity 1 40 0 3542 232 102 45 chr12 75860436 75861441 -67925014 + L2 LINE L2 1109 2199 -1115 5971 195 38 11 chr12 75861441 75862254 -67924201 - L1PA15 LINE L1 0 6165 5376 1975 126 0 14 chr12 75862254 75862547 -67923908 + AluSg1 SINE Alu 1 289 -20 5971 195 38 11 chr12 75862547 75863889 -67922566 - L1PA15 LINE L1 -789 5376 3958 3542 232 102 45 chr12 75863889 75864124 -67922331 + L2 LINE L2 2199 2419 -895 1539 181 38 14 chr12 75864146 75864433 -67922022 + AluJo SINE Alu 1 294 -18 594 176 5 0 chr12 75864485 75864605 -67921850 - L1 LINE L1 -1954 4192 4070 916 305 24 17 chr12 75864605 75864900 -67921555 + L2 LINE L2 3017 3313 0 228 206 0 111 chr12 75864930 75864961 -67921494 - MER5B DNA MER1_type -122 56 34 927 54 78 0 chr12 75864961 75865090 -67921365 + MER85 DNA T2_type 1 139 0 228 206 0 111 chr12 75865090 75865121 -67921334 - MER5B DNA MER1_type -144 34 1 912 289 162 14 chr12 75865196 75865487 -67920968 + L2 LINE L2 2220 2467 -847 928 169 6 12 chr12 75865487 75865653 -67920802 - FRAM SINE Alu 0 166 2 912 289 162 14 chr12 75865653 75865849 -67920606 + L2 LINE L2 2467 2779 -535 225 337 66 60 chr12 75866016 75866182 -67920273 + MIR3 SINE MIR 1 167 -41 200 244 0 0 chr12 75866350 75866395 -67920060 + MIR3 SINE MIR 152 196 -12 24 0 0 0 chr12 75866664 75866688 -67919767 + AT_rich Low_complexity Low_complexity 1 24 0 329 203 29 0 chr12 75866858 75866927 -67919528 + MIR SINE MIR 82 152 -110 304 272 71 18 chr12 75867056 75867225 -67919230 + L1ME4a LINE L1 5944 6121 0 211 186 0 34 chr12 75869278 75869337 -67917118 + A-rich Low_complexity Low_complexity 4 60 0 240 111 0 0 chr12 75871586 75871622 -67914833 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3012 110 2 7 chr12 75875382 75875836 -67910619 + L1PA15 LINE L1 5712 6163 -2 329 263 0 51 chr12 75876490 75876608 -67909847 + L2 LINE L2 3201 3312 -1 1810 117 64 14 chr12 75876981 75877262 -67909193 - AluSx SINE Alu -13 299 5 238 260 63 87 chr12 75877431 75877558 -67908897 - L3 LINE CR1 -218 1359 1236 537 278 94 11 chr12 75877558 75877738 -67908717 - L2 LINE L2 0 3313 3119 219 333 0 11 chr12 75877869 75877959 -67908496 - L2 LINE L2 -458 2856 2768 185 272 78 48 chr12 75877961 75878064 -67908391 - L3 LINE CR1 -337 1240 1135 353 336 79 51 chr12 75878328 75878542 -67907913 - L3 LINE CR1 -475 1102 883 181 236 167 0 chr12 75878790 75878862 -67907593 - L3 LINE CR1 -855 722 639 1789 117 0 4 chr12 75878900 75879149 -67907306 + AluSx SINE Alu 1 248 -64 230 0 0 32 chr12 75879150 75879181 -67907274 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 265 246 235 11 chr12 75879182 75879361 -67907094 + L2 LINE L2 2414 2632 -682 566 317 56 83 chr12 75879381 75879848 -67906607 + L2 LINE L2 2809 3262 -10 22 35 0 0 chr12 75880725 75880754 -67905701 + AT_rich Low_complexity Low_complexity 1 29 0 673 303 17 17 chr12 75880819 75881050 -67905405 + MIR SINE MIR 22 252 -10 222 195 0 0 chr12 75882212 75882253 -67904202 + GA-rich Low_complexity Low_complexity 4 44 0 596 203 39 31 chr12 75882542 75882670 -67903785 + L2 LINE L2 3185 3313 0 2061 105 0 10 chr12 75883430 75883735 -67902720 - AluSc SINE Alu -7 302 1 531 188 163 56 chr12 75884006 75884166 -67902289 + MER5B DNA MER1_type 1 177 -1 706 138 0 9 chr12 75884233 75884342 -67902113 - Tigger3(Golem) DNA MER2_type -150 2879 2772 649 196 28 56 chr12 75884340 75884483 -67901972 - Tigger3(Golem) DNA MER2_type -2887 142 4 * 24 32 0 0 chr12 75885085 75885116 -67901339 + AT_rich Low_complexity Low_complexity 1 31 0 421 300 123 15 chr12 75885737 75885997 -67900458 + L1ME LINE L1 5258 5545 -576 2113 117 0 7 chr12 75886118 75886417 -67900038 + AluSq SINE Alu 1 297 -16 2079 107 7 3 chr12 75886736 75887034 -67899421 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr12 75887121 75887141 -67899314 + (TC)n Simple_repeat Simple_repeat 2 21 0 2307 238 104 83 chr12 75887287 75887982 -67898473 + HAL1 LINE L1 479 1158 -1349 629 58 0 11 chr12 75887982 75888069 -67898386 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 2307 238 104 83 chr12 75888069 75888442 -67898013 + HAL1 LINE L1 1158 1522 -985 2193 120 0 13 chr12 75888442 75888758 -67897697 + AluSx SINE Alu 1 312 0 2307 238 104 83 chr12 75888758 75889184 -67897271 + HAL1 LINE L1 1522 2005 -502 495 251 76 33 chr12 75889182 75889393 -67897062 + HAL1 LINE L1 2239 2458 -49 * 1976 128 20 10 chr12 75889460 75889765 -67896690 + AluSg SINE Alu 1 308 -2 267 133 0 0 chr12 75889873 75889918 -67896537 + L1MB8 LINE L1 4960 5004 -1142 321 130 0 0 chr12 75889919 75889965 -67896490 + L1PB4 LINE L1 6021 6066 -90 1319 176 17 108 chr12 75890015 75890335 -67896120 + L1MB8 LINE L1 4992 5339 -807 1857 128 7 0 chr12 75890335 75890609 -67895846 + AluJb SINE Alu 22 297 -15 1319 176 17 108 chr12 75890609 75890633 -67895822 + L1MB8 LINE L1 5339 5297 -849 2312 97 0 0 chr12 75890633 75890931 -67895524 + AluSx SINE Alu 4 301 -11 1319 176 17 108 chr12 75890931 75890993 -67895462 + L1MB8 LINE L1 5296 5362 -784 464 158 40 0 chr12 75890993 75891069 -67895386 - MER2 DNA MER2_type 0 345 267 497 130 35 43 chr12 75891147 75891262 -67895193 + L1MB8 LINE L1 5339 5452 -710 1762 186 86 36 chr12 75891262 75891346 -67895109 + MLT1C LTR MaLR 2 80 -387 544 89 13 0 chr12 75891346 75891425 -67895030 - MADE1 DNA Mariner 0 80 1 1762 186 86 36 chr12 75891425 75891782 -67894673 + MLT1C LTR MaLR 80 465 -2 2147 150 61 53 chr12 75891784 75892290 -67894165 + L1MB8 LINE L1 5447 5956 -222 1454 139 45 15 chr12 75892390 75892656 -67893799 + L1MB7 LINE L1 5906 6179 -5 2142 159 22 0 chr12 75893021 75893379 -67893076 + MER47A DNA MER2_type 1 366 0 22 56 0 0 chr12 75893737 75893773 -67892682 + AT_rich Low_complexity Low_complexity 1 36 0 850 184 74 6 chr12 75893956 75894119 -67892336 + FAM SINE Alu 1 174 -1 24 53 0 0 chr12 75894621 75894659 -67891796 + AT_rich Low_complexity Low_complexity 1 38 0 344 264 110 114 chr12 75894849 75895103 -67891352 - MIR SINE MIR -5 257 5 237 155 77 0 chr12 75895373 75895428 -67891027 + L1MC/D LINE L1 5664 5720 -401 218 195 24 0 chr12 75895431 75895472 -67890983 + GA-rich Low_complexity Low_complexity 3 44 0 23 0 0 0 chr12 75895819 75895842 -67890613 + AT_rich Low_complexity Low_complexity 1 23 0 810 191 42 76 chr12 75895993 75896148 -67890307 - L1MA9 LINE L1 -203 6109 5964 2116 117 0 0 chr12 75896148 75896461 -67889994 - AluSx SINE Alu 0 313 1 810 191 42 76 chr12 75896461 75896566 -67889889 - L1MA9 LINE L1 -348 5964 5857 413 287 70 0 chr12 75896565 75896708 -67889747 + L1MA9 LINE L1 6122 6274 -38 * 2361 75 0 3 chr12 75897156 75897461 -67888994 + AluY SINE Alu 1 304 -7 27 0 0 0 chr12 75897654 75897681 -67888774 + AT_rich Low_complexity Low_complexity 1 27 0 703 144 140 144 chr12 75897813 75897913 -67888542 + MER46A DNA MER2_type 2 101 -2630 858 153 0 0 chr12 75897913 75898044 -67888411 + FLAM_C SINE Alu 1 131 -2 703 144 140 144 chr12 75898044 75898179 -67888276 + MER46A DNA MER2_type 101 236 0 203 207 0 138 chr12 75898207 75898294 -67888161 - MIR SINE MIR -70 192 118 9438 170 27 54 chr12 75898829 75898951 -67887504 + L1M4 LINE L1 1 125 -7043 858 147 0 8 chr12 75898951 75899080 -67887375 + FLAM_C SINE Alu 1 128 -5 9438 170 27 54 chr12 75899080 75900897 -67885558 + L1M4 LINE L1 125 1884 -5284 2016 115 0 0 chr12 75900897 75901212 -67885243 + AluSg1 SINE Alu 1 315 0 9438 170 27 54 chr12 75901212 75901325 -67885130 + L1M4 LINE L1 1884 1999 -5169 2199 99 3 0 chr12 75901333 75901638 -67884817 + AluSg SINE Alu 1 306 0 3797 176 40 52 chr12 75901661 75902214 -67884241 + L1MB3 LINE L1 4447 5005 -1178 2244 98 7 3 chr12 75902214 75902521 -67883934 + AluSg SINE Alu 1 308 -2 3797 176 40 52 chr12 75902521 75903417 -67883038 + L1MB3 LINE L1 5005 5865 -318 2242 97 0 10 chr12 75903417 75903716 -67882739 + AluSg SINE Alu 1 296 -14 3797 176 40 52 chr12 75903716 75903990 -67882465 + L1MB3 LINE L1 5865 6141 -42 3765 199 32 21 chr12 75903971 75904856 -67881599 + L1MD2 LINE L1 5456 6349 -10 * 829 251 66 17 chr12 75904823 75905356 -67881099 + L1M4 LINE L1 3856 4414 -2753 * 857 216 108 4 chr12 75905550 75905781 -67880674 + MER110 LTR ERV1 188 442 -49 180 0 0 0 chr12 75905782 75905802 -67880653 + (TA)n Simple_repeat Simple_repeat 2 21 0 2219 115 0 3 chr12 75905802 75906098 -67880357 - AluSq SINE Alu -18 295 1 580 211 35 47 chr12 75906250 75906421 -67880034 - MLT1H LTR MaLR -380 169 1 313 280 9 56 chr12 75906430 75906537 -67879918 - MIR3 SINE MIR -43 165 64 2275 63 56 0 chr12 75906919 75907203 -67879252 - AluY SINE Alu -11 300 1 39 22 0 0 chr12 75907607 75907653 -67878802 + AT_rich Low_complexity Low_complexity 1 46 0 1512 196 21 15 chr12 75907843 75908170 -67878285 - MLT1A1 LTR MaLR 0 365 37 2129 104 0 7 chr12 75908176 75908465 -67877990 + AluSg SINE Alu 5 291 -19 225 0 0 0 chr12 75908479 75908504 -67877951 + (TG)n Simple_repeat Simple_repeat 2 26 0 27 62 0 0 chr12 75909132 75909180 -67877275 + AT_rich Low_complexity Low_complexity 1 48 0 265 220 44 22 chr12 75909582 75909673 -67876782 - MER103 DNA DNA -7 159 67 1863 123 38 20 chr12 75909962 75910254 -67876201 - AluSx SINE Alu -15 297 1 2147 99 0 7 chr12 75910340 75910665 -67875790 + AluSx SINE Alu 2 324 0 229 281 35 0 chr12 75911291 75911348 -67875107 - L2 LINE L2 -291 3022 2964 4846 119 17 41 chr12 75911350 75911709 -67874746 + L1MA9 LINE L1 5448 5814 -498 482 46 15 0 chr12 75911709 75911774 -67874681 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 276 30 0 0 chr12 75911773 75911806 -67874649 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 4846 119 17 41 chr12 75911774 75912325 -67874130 + L1MA9 LINE L1 5814 6305 -7 886 295 28 12 chr12 75912482 75912733 -67873722 - L2 LINE L2 -342 2972 2718 233 263 63 0 chr12 75912932 75913027 -67873428 + MLT1K LTR MaLR 488 588 0 206 371 0 0 chr12 75913350 75913420 -67873035 + MIR3 SINE MIR 91 160 -48 2289 101 0 3 chr12 75913447 75913754 -67872701 - AluSc SINE Alu -3 306 1 2409 129 27 16 chr12 75914337 75914713 -67871742 - L1MA8 LINE L1 0 6291 5921 2172 104 15 55 chr12 75914713 75915039 -67871416 - AluSq SINE Alu 0 313 1 2088 138 16 0 chr12 75915045 75915349 -67871106 - AluSq SINE Alu -4 309 1 2409 129 27 16 chr12 75915349 75915407 -67871048 - L1MA8 LINE L1 -374 5917 5845 808 313 51 3 chr12 75915901 75916195 -67870260 + L2 LINE L2 2466 2773 -541 865 314 69 26 chr12 75916238 75916617 -67869838 + L2 LINE L2 2919 3313 0 1270 174 103 0 chr12 75916667 75916909 -67869546 + AluJo SINE Alu 1 267 -45 261 0 0 0 chr12 75916913 75916942 -67869513 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 571 78 13 0 chr12 75917237 75917314 -67869141 + AluS SINE Alu 1 78 -234 473 280 109 11 chr12 75917315 75917490 -67868965 + L2 LINE L2 3122 3313 0 1489 113 0 5 chr12 75917523 75917727 -67868728 + AluSg/x SINE Alu 93 295 -15 744 206 91 35 chr12 75918092 75918379 -67868076 - L1MC5 LINE L1 -410 7551 7249 422 239 45 0 chr12 75918459 75918608 -67867847 - L1MC5 LINE L1 -632 7225 7020 603 129 0 0 chr12 75918608 75918693 -67867762 + AluSc SINE Alu 149 233 -76 1108 240 57 79 chr12 75918695 75919191 -67867264 - L1MC5 LINE L1 -852 7109 6625 1207 112 12 0 chr12 75919191 75919360 -67867095 - AluSg/x SINE Alu -14 298 128 236 288 68 57 chr12 75919365 75919542 -67866913 - L1MC4a LINE L1 -1214 6594 6416 2000 139 3 7 chr12 75919852 75920153 -67866302 + AluSx SINE Alu 1 300 -12 2212 99 3 0 chr12 75920156 75920474 -67865981 + AluSq SINE Alu 1 319 0 428 211 0 11 chr12 75920498 75920593 -67865862 - L1MC4a LINE L1 -1895 5913 5820 2100 129 3 0 chr12 75920874 75921169 -67865286 - AluSx SINE Alu -16 296 1 1128 287 49 11 chr12 75922463 75922811 -67863644 + L2 LINE L2 1882 2242 -1072 1952 256 33 12 chr12 75922813 75923414 -67863041 - HsTC2c DNA Tc2 -2 727 114 1273 259 191 22 chr12 75923515 75924265 -67862190 + L2 LINE L2 2423 3313 0 815 277 73 25 chr12 75924309 75924546 -67861909 + L1MC4a LINE L1 5287 5511 -659 1450 239 109 67 chr12 75924546 75925250 -67861205 - MER50 LTR ERV1 0 734 1 815 277 73 25 chr12 75925250 75925566 -67860889 + L1MC4a LINE L1 5511 5787 -383 439 202 119 77 chr12 75927099 75927267 -67859188 + MER5B DNA MER1_type 1 175 -3 1831 117 4 7 chr12 75927538 75927819 -67858636 + L1PB2 LINE L1 5872 6151 0 538 296 41 36 chr12 75927984 75928083 -67858372 - L2 LINE L2 -4 3309 3212 3626 152 139 15 chr12 75928083 75928818 -67857637 - LTR1B LTR ERV1 0 826 1 538 296 41 36 chr12 75928818 75928938 -67857517 - L2 LINE L2 -101 3212 3089 237 314 73 16 chr12 75928966 75929090 -67857365 - L2 LINE L2 -1393 1921 1791 817 235 109 13 chr12 75929320 75929558 -67856897 - MIR SINE MIR 0 262 2 459 308 0 31 chr12 75929744 75929874 -67856581 + L2 LINE L2 3146 3271 -1 225 0 0 0 chr12 75929908 75929934 -67856521 - MER116 DNA Mariner -3 77 52 321 47 0 0 chr12 75930290 75930333 -67856122 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2007 121 3 30 chr12 75930387 75930684 -67855771 + AluSg SINE Alu 1 289 -21 2637 213 71 24 chr12 75930799 75931050 -67855405 + L1ME1 LINE L1 4617 4855 -1311 1912 158 0 13 chr12 75931050 75931353 -67855102 + AluJo SINE Alu 1 299 -13 2637 213 71 24 chr12 75931353 75931651 -67854804 + L1ME1 LINE L1 4855 5137 -1029 1852 133 42 3 chr12 75931651 75931936 -67854519 + AluSq SINE Alu 3 298 -15 2637 213 71 24 chr12 75931936 75932786 -67853669 + L1ME1 LINE L1 5137 6078 -88 2266 126 0 0 chr12 75932818 75933119 -67853336 - AluSx SINE Alu -11 301 1 620 268 134 20 chr12 75933188 75933494 -67852961 - L1MC4a LINE L1 -1902 5906 5566 262 214 9 62 chr12 75933495 75933607 -67852848 - LTR33A LTR ERVL -3 520 415 283 239 98 27 chr12 75934220 75934404 -67852051 - L1MC4a LINE L1 -2350 5458 5262 2022 141 0 3 chr12 75934529 75934813 -67851642 + AluSx SINE Alu 5 287 -25 858 320 160 29 chr12 75934851 75935751 -67850704 - L1MC4a LINE L1 -1008 5138 4121 204 40 0 0 chr12 75937549 75937574 -67848881 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 12560 203 53 25 chr12 75937869 75938467 -67847988 + L1MA5 LINE L1 1766 2346 -4502 2327 82 0 0 chr12 75938467 75938775 -67847680 - AluY SINE Alu 0 308 1 12560 203 53 25 chr12 75938775 75941961 -67844494 + L1MA5 LINE L1 2346 5705 -1143 2102 138 0 10 chr12 75941961 75942259 -67844196 + AluSx SINE Alu 1 295 -17 12560 203 53 25 chr12 75942259 75942634 -67843821 + L1MA5 LINE L1 5705 6068 -780 510 155 0 0 chr12 75942635 75942719 -67843736 + LTR23 LTR ERV1 320 403 -34 4506 143 36 38 chr12 75942735 75943014 -67843441 + L1MA5 LINE L1 6055 6333 -669 1906 153 16 19 chr12 75943014 75943327 -67843128 + AluJb SINE Alu 1 312 0 4506 143 36 38 chr12 75943327 75943500 -67842955 + L1MA5 LINE L1 6333 6505 -497 2292 102 3 0 chr12 75943500 75943805 -67842650 + AluSp SINE Alu 1 306 -7 4506 143 36 38 chr12 75943805 75944301 -67842154 + L1MA5 LINE L1 6505 7002 0 657 157 0 79 chr12 75944622 75944762 -67841693 + FLAM_C SINE Alu 1 129 -4 38 0 0 0 chr12 75944762 75944800 -67841655 + AT_rich Low_complexity Low_complexity 1 38 0 281 324 108 0 chr12 75944867 75944969 -67841486 - MIR SINE MIR -62 200 88 1956 56 0 4 chr12 75946177 75946408 -67840047 - AluY SINE Alu -14 297 68 1868 127 78 39 chr12 75946542 75946903 -67839552 + THE1C LTR MaLR 1 375 0 2116 261 103 30 chr12 75947516 75948391 -67838064 + L1MEc LINE L1 34 972 -5424 1606 154 7 55 chr12 75948400 75948447 -67838008 + AluJo SINE Alu 1 49 -263 2491 124 51 7 chr12 75948447 75948857 -67837598 + MSTA LTR MaLR 1 428 0 8970 161 35 10 chr12 75948857 75950467 -67835988 + MSTA-int LTR MaLR 1 1651 0 2423 101 72 46 chr12 75950473 75950852 -67835603 + MSTA LTR MaLR 1 393 -35 2361 101 3 0 chr12 75950852 75951158 -67835297 - AluSc SINE Alu -2 307 1 2423 101 72 46 chr12 75951158 75951195 -67835260 + MSTA LTR MaLR 393 428 0 1606 154 7 55 chr12 75951195 75951431 -67835024 + AluJo SINE Alu 53 278 -34 231 61 0 0 chr12 75952668 75952701 -67833754 + (T)n Simple_repeat Simple_repeat 1 33 0 27 0 0 0 chr12 75953210 75953237 -67833218 + AT_rich Low_complexity Low_complexity 1 27 0 2537 205 39 78 chr12 75953258 75953740 -67832715 + L1ME1 LINE L1 5248 5747 -419 2290 107 3 0 chr12 75953740 75954049 -67832406 - AluSp SINE Alu -3 310 1 2537 205 39 78 chr12 75954049 75954162 -67832293 + L1ME1 LINE L1 5747 5863 -303 2302 90 7 0 chr12 75954162 75954450 -67832005 - AluSg SINE Alu -20 290 1 2537 205 39 78 chr12 75954450 75954747 -67831708 + L1ME1 LINE L1 5863 6098 -68 369 246 94 7 chr12 75954667 75954805 -67831650 + L1MA10 LINE L1 6176 6325 -9 * 1644 185 13 0 chr12 75954808 75955110 -67831345 + AluJb SINE Alu 1 306 -6 188 163 70 23 chr12 75955350 75955393 -67831062 - L2 LINE L2 -4 3309 3265 28 48 0 0 chr12 75955941 75955983 -67830472 + AT_rich Low_complexity Low_complexity 1 42 0 183 328 103 20 chr12 75956270 75956474 -67829981 + L2 LINE L2 2267 2487 -827 186 269 21 97 chr12 75956748 75956841 -67829614 + L2 LINE L2 2926 3011 -261 405 361 49 83 chr12 75957105 75957454 -67829001 - L2 LINE L2 -2 3270 2934 401 290 191 21 chr12 75957638 75957921 -67828534 - L2 LINE L2 -661 2653 2323 462 156 26 0 chr12 75958129 75958230 -67828225 + AluJb SINE Alu 213 315 0 189 263 197 13 chr12 75958233 75958309 -67828146 + L2 LINE L2 3183 3272 0 1668 136 79 4 chr12 75958582 75958861 -67827594 - AluSx SINE Alu -12 300 1 2065 152 0 0 chr12 75959000 75959302 -67827153 - AluJo SINE Alu -8 304 3 218 308 0 0 chr12 75959337 75959389 -67827066 - L2 LINE L2 -20 3252 3201 679 240 98 6 chr12 75959435 75959618 -67826837 - MIR SINE MIR -61 201 2 212 362 131 22 chr12 75960050 75960362 -67826093 - L2 LINE L2 -591 2723 2378 28 29 0 0 chr12 75960855 75960890 -67825565 + AT_rich Low_complexity Low_complexity 1 35 0 1993 109 7 13 chr12 75962449 75962751 -67823704 - AluSx SINE Alu -12 300 1 287 270 157 9 chr12 75963050 75963165 -67823290 + MIR SINE MIR 72 203 -59 242 190 86 0 chr12 75963859 75963917 -67822538 + MIR SINE MIR 200 262 0 393 264 48 78 chr12 75963976 75964245 -67822210 + L2 LINE L2 2071 2331 -983 441 167 198 123 chr12 75964267 75964337 -67822118 + MER5A DNA MER1_type 9 72 -117 2052 120 7 20 chr12 75964337 75964637 -67821818 + AluSx SINE Alu 3 298 -14 441 167 198 123 chr12 75964637 75964728 -67821727 + MER5A DNA MER1_type 72 182 -7 226 316 128 17 chr12 75965276 75965393 -67821062 - MIR3 SINE MIR -21 187 58 720 222 84 145 chr12 75965689 75965792 -67820663 + HAL1 LINE L1 637 745 -1762 2111 111 10 0 chr12 75965792 75966080 -67820375 + AluSg SINE Alu 1 291 -19 720 222 84 145 chr12 75966080 75966453 -67820002 + HAL1 LINE L1 745 1084 -1423 322 71 0 0 chr12 75966637 75966679 -67819776 + 5S rRNA rRNA 1 42 -79 387 264 49 42 chr12 75967184 75967206 -67819249 + HAL1 LINE L1 1062 1082 -1425 2093 148 0 0 chr12 75967206 75967509 -67818946 + AluSx SINE Alu 1 303 -9 387 264 49 42 chr12 75967509 75967630 -67818825 + HAL1 LINE L1 1082 1206 -1301 1280 268 94 23 chr12 75967650 75968269 -67818186 + HAL1 LINE L1 1800 2462 -45 289 187 32 128 chr12 75968275 75968462 -67817993 - MER104 DNA Tc2 -9 171 3 2276 94 3 0 chr12 75968506 75968813 -67817642 + AluY SINE Alu 1 308 -3 8318 187 43 52 chr12 75968848 75970217 -67816238 + L1MB3 LINE L1 3052 4432 -1810 2241 88 3 0 chr12 75970217 75970522 -67815933 + AluSg SINE Alu 1 306 0 8318 187 43 52 chr12 75970522 75971098 -67815357 + L1MB3 LINE L1 4432 5012 -1230 2244 98 7 3 chr12 75971098 75971405 -67815050 + AluSg SINE Alu 1 308 -2 8318 187 43 52 chr12 75971405 75972301 -67814154 + L1MB3 LINE L1 5012 5831 -411 2242 97 0 10 chr12 75972301 75972600 -67813855 + AluSg SINE Alu 1 296 -14 8318 187 43 52 chr12 75972600 75973001 -67813454 + L1MB3 LINE L1 5831 6234 -8 785 231 50 18 chr12 75972968 75973349 -67813106 + L1M4 LINE L1 2835 3227 -2919 * 1975 137 3 22 chr12 75973875 75974188 -67812267 - AluJb SINE Alu -5 307 1 236 245 0 85 chr12 75975351 75975445 -67811010 + L2 LINE L2 3169 3254 -18 1595 164 14 38 chr12 75975953 75976246 -67810209 + AluJo SINE Alu 5 290 -22 1864 158 6 28 chr12 75976829 75977146 -67809309 + AluJo SINE Alu 1 310 -2 222 118 0 0 chr12 75977217 75977251 -67809204 + (A)n Simple_repeat Simple_repeat 1 34 0 568 223 15 15 chr12 75979986 75980116 -67806339 - FLAM_A SINE Alu -3 130 1 2636 48 0 0 chr12 75981919 75982230 -67804225 + AluY SINE Alu 1 311 0 1634 172 7 23 chr12 75983003 75983311 -67803144 - AluJo SINE Alu -9 303 1 1462 230 38 52 chr12 75983356 75983916 -67802539 + L1M4 LINE L1 4698 5249 -897 383 183 155 7 chr12 75984069 75984211 -67802244 + Charlie7 DNA MER1_type 2450 2612 0 225 132 0 0 chr12 75984245 75984283 -67802172 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 277 298 48 0 chr12 75984283 75984367 -67802088 + MER5A DNA MER1_type 19 106 -83 919 236 22 0 chr12 75984404 75984586 -67801869 - MER5A DNA MER1_type 0 189 4 694 165 125 22 chr12 75984925 75985197 -67801258 - L1MC5 LINE L1 -182 7779 7480 21 0 0 0 chr12 75985208 75985229 -67801226 + AT_rich Low_complexity Low_complexity 1 21 0 2512 47 7 0 chr12 75986634 75986933 -67799522 - AluY SINE Alu -10 301 1 21 71 0 0 chr12 75987974 75988016 -67798439 + AT_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr12 75988048 75988094 -67798361 + AT_rich Low_complexity Low_complexity 1 46 0 1877 146 23 3 chr12 75988641 75988942 -67797513 - AluJb SINE Alu -5 307 1 318 244 259 0 chr12 75988943 75989078 -67797377 + MIR SINE MIR 78 247 -15 559 117 0 0 chr12 75989181 75989258 -67797197 - AluS SINE Alu -234 78 2 315 316 141 23 chr12 75989393 75989570 -67796885 + L2 LINE L2 3106 3303 -10 * 634 261 87 14 chr12 75989566 75989773 -67796682 + MIR SINE MIR 18 239 -23 195 174 0 174 chr12 75989740 75989809 -67796646 + L2 LINE L2 3252 3308 -5 * 742 330 192 20 chr12 75989848 75990484 -67795971 + L3 LINE CR1 542 1286 -291 746 238 121 37 chr12 75990656 75991035 -67795420 + L1ME3A LINE L1 5734 6144 -26 194 271 0 17 chr12 75991053 75991112 -67795343 + L3 LINE CR1 1323 1380 -197 207 196 20 0 chr12 75991192 75991243 -67795212 + L2 LINE L2 3261 3312 -1 215 306 0 0 chr12 75991269 75991318 -67795137 - MER5B DNA MER1_type -63 115 67 317 102 41 0 chr12 75991410 75991459 -67794996 - LTR8 LTR ERV1 -106 585 535 25 31 0 0 chr12 75991542 75991574 -67794881 + AT_rich Low_complexity Low_complexity 1 32 0 2360 85 0 0 chr12 75992285 75992578 -67793877 + AluSg SINE Alu 1 293 -17 355 287 218 6 chr12 75992769 75992943 -67793512 + MIR SINE MIR 36 246 -16 2264 106 7 0 chr12 75993343 75993644 -67792811 - AluSx SINE Alu -9 303 1 1826 142 3 65 chr12 75993646 75993956 -67792499 - AluSx SINE Alu -21 291 1 23 33 0 0 chr12 75993962 75993992 -67792463 + AT_rich Low_complexity Low_complexity 1 30 0 931 139 76 6 chr12 75994670 75994842 -67791613 - MER20 DNA MER1_type 0 219 36 925 254 57 39 chr12 75995627 75996106 -67790349 + MLT1H LTR MaLR 10 544 -5 2115 128 0 7 chr12 75996133 75996430 -67790025 - AluSx SINE Alu -17 295 1 23 0 0 0 chr12 75998155 75998178 -67788277 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 75999173 75999193 -67787262 + (CA)n Simple_repeat Simple_repeat 2 21 0 248 279 139 0 chr12 75999193 75999322 -67787133 - MER103 DNA DNA -9 157 11 229 250 83 14 chr12 75999424 75999496 -67786959 - L2 LINE L2 -552 2762 2686 261 212 35 71 chr12 75999895 75999980 -67786475 - MIR SINE MIR -158 104 23 21 36 0 0 chr12 75999989 76000017 -67786438 + AT_rich Low_complexity Low_complexity 1 28 0 422 202 36 24 chr12 76000117 76000201 -67786254 + MIR SINE MIR 7 91 -171 193 29 29 29 chr12 76000600 76000635 -67785820 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 292 280 0 0 chr12 76001063 76001138 -67785317 - MIR SINE MIR 0 262 188 918 226 32 40 chr12 76001569 76001817 -67784638 - MIR SINE MIR -10 252 7 27 73 0 0 chr12 76002211 76002266 -67784189 + AT_rich Low_complexity Low_complexity 1 55 0 5891 127 19 6 chr12 76002281 76003657 -67782798 + L1PB2 LINE L1 4759 6149 -2 391 251 158 33 chr12 76004068 76004251 -67782204 - MIR SINE MIR -27 235 30 25 31 0 0 chr12 76004660 76004692 -67781763 + AT_rich Low_complexity Low_complexity 1 32 0 267 31 0 0 chr12 76004996 76005028 -67781427 + (TG)n Simple_repeat Simple_repeat 1 32 0 31 0 0 0 chr12 76005099 76005130 -67781325 + AT_rich Low_complexity Low_complexity 1 31 0 1987 135 14 0 chr12 76005247 76005543 -67780912 + AluSx SINE Alu 3 302 -10 2362 8 0 0 chr12 76005546 76005837 -67780618 + AluY SINE Alu 28 318 0 23 0 0 0 chr12 76006340 76006363 -67780092 + AT_rich Low_complexity Low_complexity 1 23 0 2239 126 3 0 chr12 76006418 76006727 -67779728 - AluSx SINE Alu -2 310 1 754 163 41 0 chr12 76006733 76006856 -67779599 - FLAM_C SINE Alu -4 129 2 204 266 53 43 chr12 76006863 76006903 -67779552 + MIR SINE MIR 70 108 -154 1582 192 7 14 chr12 76006903 76007200 -67779255 - AluJo SINE Alu -17 295 1 204 266 53 43 chr12 76007200 76007253 -67779202 + MIR SINE MIR 108 164 -98 265 297 40 14 chr12 76007528 76007602 -67778853 + L2 LINE L2 3189 3264 -8 200 359 26 0 chr12 76007987 76008065 -67778390 + L3 LINE CR1 327 406 -1171 544 275 96 33 chr12 76008097 76008337 -67778118 - MIR SINE MIR -3 259 5 317 273 23 0 chr12 76008348 76008436 -67778019 + L3 LINE CR1 400 489 -1088 386 230 36 93 chr12 76008705 76008844 -67777611 + L3 LINE CR1 607 737 -840 650 297 77 77 chr12 76008917 76009345 -67777110 + L3 LINE CR1 733 1163 -414 1515 171 80 0 chr12 76009345 76009619 -67776836 + AluJo SINE Alu 1 296 -6 650 297 77 77 chr12 76009619 76009735 -67776720 + L3 LINE CR1 1162 1277 -300 2263 113 0 0 chr12 76009791 76010092 -67776363 + AluSx SINE Alu 1 301 -11 198 286 0 0 chr12 76010092 76010134 -67776321 + L3 LINE CR1 1399 1440 -137 1941 114 22 7 chr12 76010714 76010986 -67775469 + AluSx SINE Alu 1 276 -36 345 284 96 71 chr12 76011106 76011345 -67775110 + MIR SINE MIR 18 262 0 711 207 104 16 chr12 76011764 76011957 -67774498 - MIR SINE MIR -25 237 28 181 207 0 0 chr12 76012143 76012172 -67774283 - MIR SINE MIR -60 148 120 248 0 31 0 chr12 76012951 76012983 -67773472 + (CCG)n Simple_repeat Simple_repeat 1 33 0 193 319 10 118 chr12 76013630 76013918 -67772537 + L2 LINE L2 2965 3221 -51 2151 109 6 6 chr12 76014021 76014332 -67772123 - AluSx SINE Alu -1 311 1 1794 119 34 14 chr12 76014490 76014662 -67771793 - MER2 DNA MER2_type -44 301 119 1897 100 0 0 chr12 76014662 76014901 -67771554 + AluSq SINE Alu 39 277 -36 1794 119 34 14 chr12 76014901 76015022 -67771433 - MER2 DNA MER2_type -226 119 2 850 140 0 22 chr12 76015516 76015652 -67770803 + FLAM_A SINE Alu 1 133 0 296 169 0 34 chr12 76015813 76015872 -67770583 + L2 LINE L2 3164 3220 -93 2220 95 3 13 chr12 76016021 76016325 -67770130 - AluSg SINE Alu -9 301 1 211 264 57 75 chr12 76016433 76016539 -67769916 - L2 LINE L2 -5 3308 3205 842 194 156 0 chr12 76017154 76017340 -67769115 - MER20 DNA MER1_type -1 218 4 860 328 68 47 chr12 76017385 76018052 -67768403 + L2 LINE L2 1854 2534 -780 506 294 59 12 chr12 76018052 76018222 -67768233 - MER5A DNA MER1_type 0 189 12 180 315 157 0 chr12 76018241 76018330 -67768125 + L2 LINE L2 2749 2851 -463 1593 181 47 40 chr12 76018522 76018697 -67767758 - AluJo SINE Alu -11 301 122 2010 130 10 7 chr12 76018697 76018989 -67767466 + AluJb SINE Alu 1 293 -19 1593 181 47 40 chr12 76018989 76019112 -67767343 - AluJo SINE Alu -190 122 1 1618 185 133 33 chr12 76019688 76020141 -67766314 - MLT1D LTR MaLR -7 498 1 1944 136 0 36 chr12 76020279 76020581 -67765874 + AluJo SINE Alu 1 291 -21 361 306 148 21 chr12 76020657 76020941 -67765514 + L3 LINE CR1 1136 1455 -122 2042 96 4 0 chr12 76021280 76021540 -67764915 - AluSp SINE Alu -18 295 35 1717 170 3 48 chr12 76021990 76022301 -67764154 + AluJo SINE Alu 1 297 -15 351 277 158 28 chr12 76022306 76022483 -67763972 + L2 LINE L2 3095 3294 -19 1257 225 47 5 chr12 76022944 76023367 -67763088 - L1M4 LINE L1 -2781 3365 2925 1913 139 0 0 chr12 76023375 76023642 -67762813 + AluSx SINE Alu 1 267 -45 560 108 78 0 chr12 76023656 76023919 -67762536 + (TA)n Simple_repeat Simple_repeat 1 283 0 303 238 5 54 chr12 76023938 76024123 -67762332 + (TTTA)n Simple_repeat Simple_repeat 3 178 0 31 26 0 0 chr12 76024123 76024161 -67762294 + AT_rich Low_complexity Low_complexity 1 38 0 1589 216 65 71 chr12 76024161 76024202 -67762253 - L1M4 LINE L1 -3224 2922 2882 1729 185 37 102 chr12 76024202 76024599 -67761856 + MLT1D LTR MaLR 1 422 -83 200 86 29 0 chr12 76024599 76024634 -67761821 + (TTTAA)n Simple_repeat Simple_repeat 5 40 0 2071 121 0 0 chr12 76024640 76024913 -67761542 - AluSx SINE Alu -39 273 1 1729 185 37 102 chr12 76024913 76025048 -67761407 + MLT1D LTR MaLR 427 505 0 1589 216 65 71 chr12 76025048 76025180 -67761275 - L1M4 LINE L1 -3264 2882 2751 697 193 196 53 chr12 76025180 76025260 -67761195 - MER2 DNA MER2_type 0 344 277 1579 171 0 85 chr12 76025260 76025576 -67760879 + AluJb SINE Alu 1 289 -23 697 193 196 53 chr12 76025576 76025796 -67760659 - MER2 DNA MER2_type -67 277 1 1589 216 65 71 chr12 76025796 76026042 -67760413 - L1M4 LINE L1 -3395 2751 2505 1772 178 0 16 chr12 76026042 76026357 -67760098 - AluJb SINE Alu -2 310 1 1589 216 65 71 chr12 76026357 76026569 -67759886 - L1M4 LINE L1 -3641 2505 2293 1691 107 4 0 chr12 76026569 76026802 -67759653 - AluSc SINE Alu 0 309 76 1500 94 9 24 chr12 76026918 76027131 -67759324 + AluSc SINE Alu 87 296 -13 236 284 49 12 chr12 76027138 76027219 -67759236 - MIR SINE MIR -146 116 33 2149 104 19 16 chr12 76027280 76027589 -67758866 - AluSx SINE Alu -2 310 1 1146 159 66 152 chr12 76027897 76028293 -67758162 + MLT1A1 LTR MaLR 4 365 0 399 243 45 9 chr12 76028318 76028429 -67758026 + L2 LINE L2 3199 3313 0 2187 115 0 0 chr12 76028536 76028824 -67757631 - AluSx SINE Alu -24 288 1 851 295 63 60 chr12 76029311 76029932 -67756523 + L1MEc LINE L1 142 764 -5632 2206 300 82 9 chr12 76029961 76031213 -67755242 + L1MEc LINE L1 297 1639 -4757 341 151 0 0 chr12 76031214 76031267 -67755188 + 5S rRNA rRNA 37 89 -32 26 30 0 0 chr12 76031286 76031319 -67755136 + AT_rich Low_complexity Low_complexity 1 33 0 434 294 118 0 chr12 76031332 76031536 -67754919 + L1MEc LINE L1 1650 1877 -4519 * 2820 241 38 44 chr12 76031532 76032014 -67754441 + L1MEc LINE L1 3230 3713 -2502 1669 181 7 7 chr12 76032014 76032323 -67754132 - AluJo SINE Alu -3 309 1 2820 241 38 44 chr12 76032323 76032991 -67753464 + L1MEc LINE L1 3713 4373 -1842 1024 49 0 0 chr12 76032991 76033153 -67753302 - AluY SINE Alu 0 323 162 764 148 8 0 chr12 76033190 76033318 -67753137 + AluSq/x SINE Alu 1 129 -184 1966 162 3 0 chr12 76033500 76033808 -67752647 - AluJb SINE Alu -1 311 3 1782 186 0 10 chr12 76033833 76034139 -67752316 - AluJb SINE Alu 0 312 10 786 142 8 15 chr12 76034163 76034297 -67752158 - FLAM_C SINE Alu 0 133 1 268 157 14 0 chr12 76034297 76034367 -67752088 + L1MEc LINE L1 4444 4514 -1701 1206 78 0 0 chr12 76034371 76034538 -67751917 + LTR47A LTR ERVL 1 167 -285 3785 142 57 19 chr12 76034543 76035281 -67751174 - LTR1 LTR ERV1 -7 778 13 978 186 55 0 chr12 76035356 76035555 -67750900 + LTR47A LTR ERVL 197 406 -46 1607 146 91 20 chr12 76035664 76036006 -67750449 + LTR10A LTR ERV1 183 548 -61 290 100 0 0 chr12 76036026 76036066 -67750389 + LTR47A LTR ERVL 413 452 0 495 215 38 86 chr12 76036073 76036282 -67750173 + L1MEc LINE L1 4521 4719 -1496 320 59 20 0 chr12 76036332 76036383 -67750072 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1079 184 192 12 chr12 76036384 76036629 -67749826 - AluJb SINE Alu -13 289 1 2136 134 0 3 chr12 76036916 76037222 -67749233 - AluSx SINE Alu -7 305 1 671 267 16 29 chr12 76037392 76037699 -67748756 - AluSq SINE Alu 0 303 1 32 57 0 0 chr12 76037926 76037979 -67748476 + AT_rich Low_complexity Low_complexity 1 53 0 2376 57 7 7 chr12 76038143 76038440 -67748015 - AluY SINE Alu -14 297 1 193 87 22 22 chr12 76038440 76038486 -67747969 + (TA)n Simple_repeat Simple_repeat 2 47 0 1156 123 0 0 chr12 76038486 76038648 -67747807 + AluSg/x SINE Alu 130 291 -21 204 40 0 0 chr12 76039038 76039063 -67747392 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2550 70 0 3 chr12 76039838 76040150 -67746305 - AluY SINE Alu 0 311 1 642 297 43 35 chr12 76040154 76040906 -67745549 - L1M4 LINE L1 -1440 4706 3943 1920 135 33 102 chr12 76040906 76041365 -67745090 + MSTA LTR MaLR 1 427 -1 642 297 43 35 chr12 76041365 76041516 -67744939 - L1M4 LINE L1 -2203 3943 3795 1209 165 0 46 chr12 76041721 76041854 -67744601 + AluJo SINE Alu 3 124 -188 1578 200 7 0 chr12 76041854 76042139 -67744316 + AluJo SINE Alu 1 287 -25 1209 165 0 46 chr12 76042139 76042223 -67744232 + AluJo SINE Alu 124 210 -102 810 202 60 41 chr12 76042227 76042445 -67744010 - MLT1A2 LTR MaLR -152 222 1 557 218 23 0 chr12 76042446 76042579 -67743876 - MLT1A2-int LTR MaLR -1 1734 1599 1391 169 115 46 chr12 76042579 76042789 -67743666 - MLT1A2 LTR MaLR -2 372 127 2224 136 0 0 chr12 76042789 76043098 -67743357 - AluSc SINE Alu 0 309 1 1391 169 115 46 chr12 76043098 76043235 -67743220 - MLT1A2 LTR MaLR -247 127 1 7792 116 11 19 chr12 76043360 76044608 -67741847 + HSMAR2 DNA Mariner 9 1246 -56 459 202 0 0 chr12 76044611 76044705 -67741750 - FLAM_A SINE Alu 0 142 49 250 78 20 39 chr12 76044705 76044756 -67741699 + HSMAR2 DNA Mariner 1253 1302 0 681 295 96 24 chr12 76044760 76045177 -67741278 - L1M4 LINE L1 -2802 3344 2898 23 33 0 0 chr12 76045225 76045255 -67741200 + AT_rich Low_complexity Low_complexity 1 30 0 1589 197 7 39 chr12 76045533 76045842 -67740613 + AluJo SINE Alu 1 299 -13 2232 135 0 0 chr12 76045881 76046193 -67740262 - AluSx SINE Alu 0 312 1 2071 111 20 17 chr12 76046380 76046678 -67739777 - AluSx SINE Alu -13 299 1 288 98 0 0 chr12 76046678 76046719 -67739736 + MSTA LTR MaLR 388 428 0 1815 222 52 53 chr12 76046946 76047524 -67738931 - MER49 LTR ERV1 0 923 185 2316 90 0 46 chr12 76047524 76047847 -67738608 + AluSc SINE Alu 1 308 -1 1815 222 52 53 chr12 76047847 76048015 -67738440 - MER49 LTR ERV1 -738 185 18 271 275 30 15 chr12 76048303 76048434 -67738021 - HAL1 LINE L1 -1262 1245 1113 26 0 0 0 chr12 76048551 76048577 -67737878 + AT_rich Low_complexity Low_complexity 1 26 0 548 263 13 104 chr12 76048741 76048990 -67737465 + MIR SINE MIR 3 232 -30 589 256 41 12 chr12 76049080 76049252 -67737203 + MER5B DNA MER1_type 2 178 0 444 324 50 23 chr12 76049427 76049646 -67736809 + L2 LINE L2 2736 2960 -354 794 246 73 17 chr12 76049682 76049970 -67736485 + L1M4 LINE L1 3416 3719 -2427 1458 221 108 26 chr12 76049970 76050351 -67736104 - MLT1F LTR MaLR -75 467 56 946 188 143 29 chr12 76050374 76050688 -67735767 + L1ME2 LINE L1 5787 6136 -28 656 209 41 164 chr12 76051916 76052038 -67734417 - MIR SINE MIR 0 262 127 2209 114 10 0 chr12 76052038 76052337 -67734118 + AluSx SINE Alu 2 303 -9 2134 105 0 0 chr12 76052339 76052616 -67733839 + AluSc SINE Alu 1 277 -32 656 209 41 164 chr12 76052616 76052782 -67733673 - MIR SINE MIR -136 126 7 1207 186 113 7 chr12 76052798 76053072 -67733383 - MLT1D LTR MaLR 0 505 203 11055 197 35 18 chr12 76053112 76054253 -67732202 - L1MB2 LINE L1 -3 6232 5111 1775 172 3 17 chr12 76054253 76054555 -67731900 - AluJo SINE Alu -14 298 1 11055 197 35 18 chr12 76054555 76054971 -67731484 - L1MB2 LINE L1 -1124 5111 4703 1814 174 3 3 chr12 76054971 76055269 -67731186 - AluJb SINE Alu -14 298 1 11055 197 35 18 chr12 76055269 76057446 -67729009 - L1MB2 LINE L1 -1532 4703 2441 2048 136 3 7 chr12 76057458 76057768 -67728687 - AluSx SINE Alu -3 309 1 287 284 39 47 chr12 76057832 76057959 -67728496 - L1MB2 LINE L1 -6008 133 8 769 231 22 6 chr12 76057964 76058146 -67728309 - MLT1D LTR MaLR -441 185 1 388 289 26 7 chr12 76059230 76059382 -67727073 + MLT1H LTR MaLR 26 180 -369 1379 229 33 9 chr12 76059410 76059881 -67726574 - L1ME LINE L1 -502 5660 5177 614 193 52 22 chr12 76060132 76060267 -67726188 + MIR SINE MIR 100 238 -24 331 298 89 12 chr12 76060358 76060526 -67725929 + L1ME LINE L1 5420 5600 -521 194 274 16 32 chr12 76060724 76060786 -67725669 - L2 LINE L2 -219 3053 2993 2000 166 98 137 chr12 76061140 76062000 -67724455 + LTR1B LTR ERV1 1 826 0 2103 130 3 16 chr12 76062345 76062652 -67723803 - AluSx SINE Alu -9 303 1 1813 194 0 3 chr12 76062785 76063089 -67723366 - AluJo SINE Alu -9 303 1 1167 119 0 0 chr12 76063175 76063334 -67723121 + AluSc SINE Alu 136 294 -15 1778 181 19 10 chr12 76063360 76063669 -67722786 - AluJo SINE Alu 0 312 1 31 0 0 0 chr12 76063703 76063734 -67722721 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 76063757 76063778 -67722677 + AT_rich Low_complexity Low_complexity 1 21 0 1563 181 15 62 chr12 76063778 76064103 -67722352 + AluJo SINE Alu 1 310 -2 1888 129 61 0 chr12 76064547 76064826 -67721629 - AluSg SINE Alu -14 296 1 663 292 83 7 chr12 76065512 76065813 -67720642 + MER46C DNA MER2_type 7 330 -8 2321 78 12 38 chr12 76066167 76066487 -67719968 - AluSx SINE Alu 0 312 1 597 259 23 35 chr12 76066502 76066676 -67719779 - MER5B DNA MER1_type 0 178 7 501 206 0 137 chr12 76066665 76066771 -67719684 + MER5B DNA MER1_type 42 124 -54 * 1837 133 47 20 chr12 76066771 76067071 -67719384 + AluSx SINE Alu 1 308 -4 501 206 0 137 chr12 76067071 76067110 -67719345 + MER5B DNA MER1_type 124 167 -11 303 23 0 0 chr12 76068621 76068664 -67717791 - L1PA6 LINE L1 0 6154 6112 234 296 37 46 chr12 76068928 76069036 -67717419 + L2 LINE L2 3141 3247 -25 2250 108 3 0 chr12 76069519 76069814 -67716641 - AluSx SINE Alu -14 298 3 222 139 28 0 chr12 76070687 76070723 -67715732 + MIR SINE MIR 34 70 -192 477 0 0 0 chr12 76070724 76070777 -67715678 + (TC)n Simple_repeat Simple_repeat 2 54 0 838 207 7 0 chr12 76070782 76070927 -67715528 - FRAM SINE Alu -30 146 1 536 323 63 5 chr12 76070927 76071116 -67715339 + MIR SINE MIR 61 260 -2 269 282 34 0 chr12 76071120 76071237 -67715218 + GA-rich Low_complexity Low_complexity 1 121 0 1425 142 0 25 chr12 76071240 76071480 -67714975 - MER46A DNA MER2_type -1 235 2 2461 77 0 3 chr12 76072438 76072750 -67713705 + AluY SINE Alu 1 311 0 35 41 0 0 chr12 76073178 76073227 -67713228 + AT_rich Low_complexity Low_complexity 1 49 0 822 126 0 8 chr12 76073231 76073350 -67713105 - FLAM_C SINE Alu -25 118 1 514 361 57 8 chr12 76073520 76073764 -67712691 + MIR SINE MIR 6 261 -1 2679 105 3 0 chr12 76075367 76075730 -67710725 - THE1B LTR MaLR 0 364 1 343 272 104 8 chr12 76075761 76075886 -67710569 - MIR SINE MIR 0 262 126 825 184 36 36 chr12 76075996 76076219 -67710236 + THE1A LTR MaLR 133 355 0 5719 108 7 5 chr12 76076219 76077093 -67709362 + THE1A-int LTR MaLR 1 876 -704 5118 152 14 8 chr12 76077211 76078763 -67707692 - L1PB1 LINE L1 -265 5886 4323 1576 137 4 18 chr12 76078892 76079169 -67707286 - THE1A LTR MaLR -80 275 3 3753 143 42 42 chr12 76079171 76079905 -67706550 - THE1A-int LTR MaLR 0 1580 847 528 179 0 45 chr12 76081123 76081257 -67705198 + AluSq/x SINE Alu 2 129 -183 679 215 0 57 chr12 76082010 76082168 -67704287 + FRAM SINE Alu 2 150 -16 5611 207 36 4 chr12 76082998 76084211 -67702244 + L1PA15-16 LINE L1 25 1162 -5687 204 272 39 68 chr12 76084747 76084850 -67701605 + L2 LINE L2 3173 3272 0 281 26 0 26 chr12 76084895 76084934 -67701521 + (TG)n Simple_repeat Simple_repeat 1 38 0 1000 234 48 32 chr12 76085326 76085574 -67700881 + MIR SINE MIR 11 262 0 1239 151 18 13 chr12 76088539 76088764 -67697691 - AluSx SINE Alu -82 230 5 330 172 0 0 chr12 76088770 76088834 -67697621 - L1P4 LINE L1 -506 5668 5605 534 282 61 9 chr12 76088945 76089158 -67697297 - MIR SINE MIR -19 243 20 2015 66 4 12 chr12 76089869 76090127 -67696328 - AluSg SINE Alu -5 305 50 25 0 0 0 chr12 76090657 76090682 -67695773 + AT_rich Low_complexity Low_complexity 1 25 0 354 265 103 29 chr12 76090746 76090882 -67695573 - MER5A DNA MER1_type -1 188 43 339 246 123 25 chr12 76090782 76090904 -67695551 + MER5A DNA MER1_type 54 187 -2 * 488 252 109 76 chr12 76091456 76091818 -67694637 - MARNA DNA Mariner -9 577 197 2184 104 3 3 chr12 76091818 76092116 -67694339 + AluSg SINE Alu 1 298 -12 488 252 109 76 chr12 76092116 76092185 -67694270 - MARNA DNA Mariner -389 197 132 6450 81 12 2 chr12 76093876 76095148 -67691307 - L1PA10 LINE L1 -11 6157 4881 324 285 201 7 chr12 76095150 76095294 -67691161 - MIR SINE MIR -21 241 70 679 311 40 12 chr12 76095726 76095974 -67690481 - MIR SINE MIR -1 261 7 522 134 0 0 chr12 76096151 76096233 -67690222 + MLT1E3 LTR MaLR 1 82 -542 243 324 65 14 chr12 76098522 76098661 -67687794 - L2 LINE L2 0 3313 3168 278 132 19 0 chr12 76098695 76098748 -67687707 + (TA)n Simple_repeat Simple_repeat 2 55 0 277 202 40 101 chr12 76098752 76098851 -67687604 - MIR SINE MIR -58 204 112 409 329 39 0 chr12 76098852 76099007 -67687448 + MIR SINE MIR 88 248 -14 186 227 0 0 chr12 76099178 76099222 -67687233 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 309 284 11 0 chr12 76099223 76099311 -67687144 + L1MC4 LINE L1 6614 6702 -1340 187 256 0 24 chr12 76099313 76099395 -67687060 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 305 276 11 11 chr12 76099395 76099482 -67686973 + L1MC4 LINE L1 6614 6700 -1342 456 297 0 60 chr12 76099487 76099938 -67686517 + (CATATA)n Simple_repeat Simple_repeat 1 423 0 254 206 10 93 chr12 76099959 76100056 -67686399 + L1MC4 LINE L1 6615 6703 -1339 203 86 0 29 chr12 76100073 76100108 -67686347 + (CA)n Simple_repeat Simple_repeat 2 35 0 752 233 37 0 chr12 76101372 76101535 -67684920 - FRAM SINE Alu -14 162 1 2304 157 16 53 chr12 76103103 76103147 -67683308 + Tigger2a DNA MER2_type 1 45 -2663 1940 147 3 3 chr12 76103147 76103446 -67683009 - AluSx SINE Alu -13 299 1 2304 157 16 53 chr12 76103446 76103852 -67682603 + Tigger2a DNA MER2_type 45 434 0 426 324 164 18 chr12 76106428 76106647 -67679808 + MIR SINE MIR 12 262 0 1060 176 11 0 chr12 76106658 76106834 -67679621 - AluJo SINE Alu -16 296 119 4609 65 20 3 chr12 76107621 76108233 -67678222 - L1PA13 LINE L1 0 6163 5542 3180 175 15 85 chr12 76109208 76109859 -67676596 + LTR8 LTR ERV1 3 597 -94 2007 125 35 0 chr12 76109859 76110147 -67676308 - AluSx SINE Alu -14 298 1 3180 175 15 85 chr12 76110147 76110236 -67676219 + LTR8 LTR ERV1 597 691 0 2441 76 0 7 chr12 76111368 76111669 -67674786 - AluSq SINE Alu -14 299 1 1827 60 0 8 chr12 76111686 76111921 -67674534 - L1PA8 LINE L1 -1 6171 5939 2186 121 0 10 chr12 76113188 76113493 -67672962 + AluSx SINE Alu 1 302 -10 1701 138 98 0 chr12 76113518 76113794 -67672661 + AluSg SINE Alu 1 303 -7 2146 107 25 14 chr12 76114346 76114700 -67671755 - L1MA9 LINE L1 -4 6308 5951 252 0 0 0 chr12 76115101 76115129 -67671326 + (TG)n Simple_repeat Simple_repeat 2 29 0 317 233 156 26 chr12 76115152 76115304 -67671151 + MIR SINE MIR 23 200 -62 222 37 0 0 chr12 76115881 76115908 -67670547 + (CA)n Simple_repeat Simple_repeat 2 28 0 1004 104 0 15 chr12 76116332 76116466 -67669989 + AluSx SINE Alu 30 161 -151 250 304 154 22 chr12 76117432 76117751 -67668704 - L2 LINE L2 -552 2762 2402 1970 100 0 8 chr12 76117891 76118150 -67668305 - AluSx SINE Alu -26 286 30 1935 143 3 23 chr12 76118738 76119046 -67667409 - AluSx SINE Alu -10 302 1 942 133 0 0 chr12 76119077 76119220 -67667235 - FLAM_C SINE Alu 0 143 1 22 0 0 0 chr12 76119660 76119682 -67666773 + AT_rich Low_complexity Low_complexity 1 22 0 390 162 0 0 chr12 76119879 76119953 -67666502 + A-rich Low_complexity Low_complexity 1 74 0 321 341 126 27 chr12 76120274 76120608 -67665847 + L2 LINE L2 2399 2765 -549 244 191 0 0 chr12 76121046 76121088 -67665367 + 5S rRNA rRNA 1 42 -79 317 322 74 13 chr12 76121150 76121299 -67665156 - L2 LINE L2 -27 3286 3129 593 332 170 42 chr12 76121346 76122004 -67664451 + L2 LINE L2 2272 3011 -261 185 296 96 35 chr12 76122021 76122136 -67664319 + MIR SINE MIR 109 230 -32 486 268 9 92 chr12 76122321 76122549 -67663906 + MIR SINE MIR 6 214 -48 2050 128 7 7 chr12 76124431 76124737 -67661718 + AluSx SINE Alu 1 306 -6 244 292 277 0 chr12 76125013 76125143 -67661312 - MER5A DNA MER1_type -6 183 18 23 33 0 0 chr12 76126276 76126306 -67660149 + AT_rich Low_complexity Low_complexity 1 30 0 291 236 230 69 chr12 76126535 76126709 -67659746 - MIR SINE MIR -55 207 6 2043 129 20 10 chr12 76127366 76127668 -67658787 + AluSg SINE Alu 2 306 -4 1622 186 11 3 chr12 76128082 76128367 -67658088 + AluJo SINE Alu 1 287 -25 270 0 0 0 chr12 76128882 76128912 -67657543 + (CA)n Simple_repeat Simple_repeat 2 31 0 374 209 35 0 chr12 76130759 76130845 -67655610 + MER94 DNA DNA 13 101 -33 241 192 19 0 chr12 76131133 76131185 -67655270 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 253 241 99 68 chr12 76131273 76131435 -67655020 + MER20B DNA MER1_type 1 167 -616 24 0 0 0 chr12 76131468 76131492 -67654963 + AT_rich Low_complexity Low_complexity 1 24 0 1796 159 0 51 chr12 76131830 76132144 -67654311 - AluJo SINE Alu -14 298 1 310 212 118 12 chr12 76132144 76132229 -67654226 - MER5B DNA MER1_type -78 100 7 256 103 0 0 chr12 76132251 76132290 -67654165 + MADE1 DNA Mariner 5 43 -37 1354 170 3 75 chr12 76132876 76133170 -67653285 - AluJo SINE Alu -1 311 39 1021 271 100 32 chr12 76135326 76135936 -67650519 - L2 LINE L2 -41 3272 2621 465 249 280 11 chr12 76136506 76136695 -67649760 + MIR SINE MIR 15 254 -8 889 217 16 0 chr12 76136792 76136976 -67649479 - MER5A DNA MER1_type 0 189 3 2093 100 3 28 chr12 76136992 76137323 -67649132 - AluSx SINE Alu 0 324 1 607 174 0 80 chr12 76137329 76137467 -67648988 - FLAM_A SINE Alu -6 127 1 273 251 157 52 chr12 76137593 76137784 -67648671 + MIR SINE MIR 33 243 -19 24 0 0 0 chr12 76138262 76138286 -67648169 + AT_rich Low_complexity Low_complexity 1 24 0 2137 108 0 17 chr12 76138497 76138793 -67647662 - AluSx SINE Alu -21 291 1 193 365 0 0 chr12 76140066 76140118 -67646337 + L2 LINE L2 3163 3214 -58 906 211 3 67 chr12 76140119 76140404 -67646051 - MER20B DNA MER1_type -2 781 515 2128 147 0 0 chr12 76140406 76140705 -67645750 - AluSx SINE Alu -13 299 1 1978 129 67 17 chr12 76140836 76141192 -67645263 + THE1C LTR MaLR 1 374 -1 1871 158 3 19 chr12 76141894 76142205 -67644250 - AluJb SINE Alu -6 306 1 313 253 0 0 chr12 76142493 76142572 -67643883 - MER20B DNA MER1_type -698 85 7 543 108 10 39 chr12 76142587 76142689 -67643766 + MSTC LTR MaLR 1 99 -329 241 195 0 0 chr12 76142870 76142911 -67643544 + MSTD LTR MaLR 218 258 -138 836 133 28 0 chr12 76142953 76143096 -67643359 + MSTD LTR MaLR 250 396 0 245 360 116 0 chr12 76143419 76143583 -67642872 + L2 LINE L2 2869 3051 -221 523 287 15 7 chr12 76144259 76144395 -67642060 - L2 LINE L2 -2 3270 3134 24 0 0 0 chr12 76144445 76144469 -67641986 + AT_rich Low_complexity Low_complexity 1 24 0 28 107 0 0 chr12 76144521 76144633 -67641822 + AT_rich Low_complexity Low_complexity 1 112 0 189 107 0 0 chr12 76144958 76144986 -67641469 + (A)n Simple_repeat Simple_repeat 1 28 0 694 179 65 0 chr12 76146883 76147006 -67639449 - FLAM_A SINE Alu -2 131 1 272 314 72 33 chr12 76147422 76147575 -67638880 + MIR3 SINE MIR 41 199 -9 247 221 146 25 chr12 76147741 76147899 -67638556 - MER112 DNA MER1_type -82 178 2 278 212 80 53 chr12 76148641 76148754 -67637701 + MLT1J LTR MaLR 5 120 -391 2410 94 3 0 chr12 76148878 76149187 -67637268 - AluSp SINE Alu -3 310 1 720 212 0 0 chr12 76149463 76149581 -67636874 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr12 76149581 76149606 -67636849 + AT_rich Low_complexity Low_complexity 1 25 0 191 333 0 63 chr12 76149770 76149881 -67636574 + L2 LINE L2 2986 3089 -183 2059 165 123 2 chr12 76150674 76151102 -67635353 - MER44D DNA MER2_type -7 598 64 2487 100 27 20 chr12 76151102 76151656 -67634799 - MER51A LTR ERV1 0 634 1 545 226 119 72 chr12 76151888 76152123 -67634332 + MER90 LTR ERV1 8 253 -361 2218 97 3 3 chr12 76152605 76152915 -67633540 + AluSx SINE Alu 1 310 -2 602 167 51 29 chr12 76154173 76154311 -67632144 - FLAM_C SINE Alu 0 143 3 1913 88 81 0 chr12 76154451 76154723 -67631732 + AluSx SINE Alu 1 294 -18 861 213 158 31 chr12 76155300 76155399 -67631056 - Charlie8 DNA MER1_type -1928 489 404 2143 81 39 3 chr12 76155399 76155683 -67630772 - AluSq SINE Alu -19 294 1 861 213 158 31 chr12 76155683 76156000 -67630455 - Charlie8 DNA MER1_type -2013 404 27 1965 133 71 0 chr12 76156282 76156606 -67629849 + MER7A DNA MER2_type 1 345 -1 1841 131 31 14 chr12 76157317 76157607 -67628848 - AluSx SINE Alu -17 295 1 802 320 97 31 chr12 76157609 76158053 -67628402 - L2 LINE L2 -6 3307 2835 243 176 0 0 chr12 76158061 76158112 -67628343 + MER69 DNA AcHobo 87 137 -1089 457 149 0 0 chr12 76158120 76158194 -67628261 + MER69 DNA AcHobo 2452 2525 -1 212 272 49 12 chr12 76158216 76158297 -67628158 + MIR SINE MIR 179 262 0 271 274 0 0 chr12 76158495 76158568 -67627887 - MIR SINE MIR -5 257 185 362 145 4 72 chr12 76158641 76158910 -67627545 + AluJo SINE Alu 1 301 -1 280 354 27 27 chr12 76159128 76159275 -67627180 + MIR SINE MIR 56 202 -60 238 326 84 11 chr12 76159869 76159964 -67626491 + L2 LINE L2 3187 3288 -25 1983 149 0 0 chr12 76160067 76160355 -67626100 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr12 76160363 76160398 -67626057 + (TG)n Simple_repeat Simple_repeat 2 36 0 3714 82 12 2 chr12 76160398 76160893 -67625562 + L1PA10 LINE L1 5664 6163 -5 2089 83 45 0 chr12 76164141 76164453 -67622002 - L1MA1 LINE L1 0 6302 5977 1949 107 13 42 chr12 76165152 76165462 -67620993 + AluSx SINE Alu 1 301 -11 437 200 48 19 chr12 76166343 76166448 -67620007 - L2 LINE L2 -12 3301 3194 409 276 0 9 chr12 76166453 76166558 -67619897 + MER5B DNA MER1_type 1 104 -74 447 150 30 30 chr12 76167578 76167711 -67618744 + GA-rich Low_complexity Low_complexity 4 136 0 2781 7 0 0 chr12 76171043 76171343 -67615112 - AluYa5 SINE Alu -11 300 1 469 270 185 19 chr12 76172557 76172816 -67613639 - L2 LINE L2 -1 3312 3011 275 319 85 27 chr12 76173612 76173800 -67612655 + L3 LINE CR1 1066 1264 -313 556 268 89 47 chr12 76173851 76174086 -67612369 + MIR SINE MIR 6 250 -12 290 261 152 0 chr12 76174137 76174229 -67612226 - MIR SINE MIR -59 149 44 3047 95 4 11 chr12 76175092 76175110 -67611345 - MER41A LTR ERV1 -106 448 431 2190 132 3 3 chr12 76175110 76175420 -67611035 + AluSx SINE Alu 1 310 -2 3047 95 4 11 chr12 76175420 76175852 -67610603 - MER41A LTR ERV1 -123 431 1 458 195 0 0 chr12 76175852 76175934 -67610521 + AluSg/x SINE Alu 217 298 -12 656 138 0 138 chr12 76176080 76176232 -67610223 - FLAM_C SINE Alu -2 131 1 1928 194 3 14 chr12 76176646 76177013 -67609442 + MLT1A1 LTR MaLR 3 365 0 497 137 0 39 chr12 76177862 76177873 -67608582 + MER4A LTR ERV1 1 11 -653 185 65 32 0 chr12 76177873 76177904 -67608551 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 497 137 0 39 chr12 76177904 76177994 -67608461 + MER4A LTR ERV1 11 98 -566 * 1877 108 17 22 chr12 76177990 76178341 -67608114 + MER4A LTR ERV1 257 664 0 515 281 15 22 chr12 76178419 76178554 -67607901 + MIR SINE MIR 24 157 -105 1810 146 23 10 chr12 76179997 76180298 -67606157 + AluJo SINE Alu 3 307 -5 21 36 0 0 chr12 76180326 76180354 -67606101 + AT_rich Low_complexity Low_complexity 1 28 0 393 360 38 0 chr12 76180414 76180599 -67605856 - MIR SINE MIR -34 228 39 757 151 0 68 chr12 76180619 76180765 -67605690 + MER5A DNA MER1_type 53 188 -1 401 151 55 0 chr12 76181135 76181208 -67605247 + MSTD LTR MaLR 1 77 -319 465 183 111 8 chr12 76181217 76181343 -67605112 + L1MA10 LINE L1 6186 6324 -10 1200 64 0 0 chr12 76181506 76181662 -67604793 - L1PA4 LINE L1 -3 6152 5997 430 171 0 0 chr12 76181726 76181808 -67604647 + L1MA7 LINE L1 6187 6268 -23 877 138 0 13 chr12 76181816 76181968 -67604487 - L1PA16 LINE L1 -11 6155 6006 1359 204 66 31 chr12 76181968 76182287 -67604168 + MSTD LTR MaLR 67 396 0 376 269 19 0 chr12 76182287 76182391 -67604064 + MIR SINE MIR 47 152 -110 1819 154 73 12 chr12 76182434 76182778 -67603677 + MLT1A1 LTR MaLR 1 365 0 1607 217 112 64 chr12 76184022 76184161 -67602294 + MLT1F LTR MaLR 1 132 -410 2200 126 32 24 chr12 76184161 76184533 -67601922 + THE1C LTR MaLR 1 375 0 1607 217 112 64 chr12 76184533 76184910 -67601545 + MLT1F LTR MaLR 132 542 0 713 180 173 0 chr12 76185239 76185389 -67601066 - MER5A DNA MER1_type 0 189 14 1232 145 10 0 chr12 76185648 76185841 -67600614 - AluSx SINE Alu -6 306 112 740 115 0 10 chr12 76185900 76186004 -67600451 - AluSx SINE Alu -207 106 4 328 296 30 15 chr12 76186099 76186234 -67600221 - MIR SINE MIR -48 214 78 818 181 42 0 chr12 76186540 76186684 -67599771 - FAM SINE Alu -19 166 17 720 277 69 31 chr12 76186760 76187020 -67599435 - MLT1K LTR MaLR -89 499 230 631 221 160 9 chr12 76187047 76187260 -67599195 + MIR SINE MIR 18 262 0 812 267 110 11 chr12 76187468 76187749 -67598706 + MLT1J LTR MaLR 1 309 -202 482 301 40 45 chr12 76187821 76187997 -67598458 - MER91A DNA MER1_type -20 176 2 660 210 17 0 chr12 76188720 76188839 -67597616 - FLAM_C SINE Alu -19 124 4 635 124 116 16 chr12 76188924 76189045 -67597410 - FLAM_C SINE Alu 0 133 1 1659 189 26 0 chr12 76189154 76189456 -67596999 + AluJo SINE Alu 1 310 -2 336 266 95 15 chr12 76189576 76189718 -67596737 - MIR SINE MIR -58 150 40 2335 65 0 0 chr12 76190609 76190899 -67595556 - AluY SINE Alu -21 290 1 187 281 37 37 chr12 76191430 76191512 -67594943 + L2 LINE L2 2991 3072 -200 229 167 24 0 chr12 76193178 76193220 -67593235 + MER91 DNA MER1_type 77 119 -21 21 0 0 0 chr12 76194108 76194129 -67592326 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 76194351 76194386 -67592069 + AT_rich Low_complexity Low_complexity 1 35 0 220 242 0 16 chr12 76194730 76194792 -67591663 + A-rich Low_complexity Low_complexity 4 64 0 210 191 0 0 chr12 76195741 76195788 -67590667 + A-rich Low_complexity Low_complexity 1 47 0 205 86 29 0 chr12 76195990 76196025 -67590430 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 207 0 0 0 chr12 76196320 76196343 -67590112 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 247 13 104 chr12 76197518 76197595 -67588860 - MER5A DNA MER1_type -86 103 34 * 252 321 0 25 chr12 76197536 76197617 -67588838 + MER5A DNA MER1_type 111 189 0 255 269 51 13 chr12 76198295 76198373 -67588082 + MIR SINE MIR 23 103 -105 2113 139 0 3 chr12 76200153 76200462 -67585993 - AluSx SINE Alu -4 308 1 1638 174 3 27 chr12 76200652 76200950 -67585505 + AluSx SINE Alu 1 291 -21 313 241 8 83 chr12 76201086 76201219 -67585236 - MER103 DNA DNA 0 166 44 194 333 159 15 chr12 76201413 76201545 -67584910 + MIR3 SINE MIR 19 169 -39 23 92 0 0 chr12 76202395 76202460 -67583995 + AT_rich Low_complexity Low_complexity 1 65 0 2053 108 3 20 chr12 76202629 76202935 -67583520 + AluSx SINE Alu 3 303 -9 740 233 35 0 chr12 76203158 76203330 -67583125 + MER58A DNA MER1_type 45 222 -2 195 301 194 11 chr12 76204286 76204379 -67582076 - L2 LINE L2 -5 3308 3199 2152 113 3 10 chr12 76205946 76206247 -67580208 - AluSx SINE Alu -13 299 1 209 345 0 23 chr12 76206834 76206921 -67579534 - L2 LINE L2 -2 3270 3186 2072 130 10 0 chr12 76207102 76207401 -67579054 - AluSx SINE Alu -10 302 1 23 33 0 0 chr12 76208244 76208274 -67578181 + AT_rich Low_complexity Low_complexity 1 30 0 306 236 230 69 chr12 76208503 76208677 -67577778 - MIR SINE MIR -55 207 6 1995 129 20 10 chr12 76209334 76209636 -67576819 + AluSg SINE Alu 2 306 -4 1571 186 11 3 chr12 76210050 76210335 -67576120 + AluJo SINE Alu 1 287 -25 270 0 0 0 chr12 76210850 76210880 -67575575 + (CA)n Simple_repeat Simple_repeat 2 31 0 409 245 31 0 chr12 76212716 76212814 -67573641 + MER94 DNA DNA 1 101 -33 241 192 19 0 chr12 76213102 76213154 -67573301 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 304 241 99 68 chr12 76213242 76213404 -67573051 + MER20B DNA MER1_type 1 167 -616 24 0 0 0 chr12 76213437 76213461 -67572994 + AT_rich Low_complexity Low_complexity 1 24 0 2273 74 0 36 chr12 76213799 76214108 -67572347 - AluSx SINE Alu -14 298 1 450 0 0 0 chr12 76214198 76214248 -67572207 + (CA)n Simple_repeat Simple_repeat 2 51 0 719 159 23 8 chr12 76214967 76215099 -67571356 + MER3 DNA MER1_type 2 135 -74 22 35 0 0 chr12 76216113 76216142 -67570313 + AT_rich Low_complexity Low_complexity 1 29 0 1533 108 0 14 chr12 76218399 76218613 -67567842 - AluSx SINE Alu -101 211 1 36 40 0 0 chr12 76220979 76221029 -67565426 + AT_rich Low_complexity Low_complexity 1 50 0 238 216 0 0 chr12 76222535 76222586 -67563869 + T-rich Low_complexity Low_complexity 1 51 0 375 200 214 7 chr12 76223684 76223829 -67562626 + MER104 DNA MER2_type 3 177 -3 335 138 17 0 chr12 76224576 76224634 -67561821 - Alu SINE Alu -1 299 241 2035 110 3 3 chr12 76224681 76224972 -67561483 - AluSx SINE Alu -21 291 1 1949 157 0 0 chr12 76226505 76226799 -67559656 - AluSx SINE Alu -18 294 1 23 0 0 0 chr12 76227613 76227636 -67558819 + AT_rich Low_complexity Low_complexity 1 23 0 1780 89 12 12 chr12 76227829 76228076 -67558379 + AluSq SINE Alu 51 297 -16 215 233 12 47 chr12 76228834 76228920 -67557535 + CT-rich Low_complexity Low_complexity 2 84 0 2059 104 0 4 chr12 76229192 76229499 -67556956 + AluSq SINE Alu 9 314 0 987 217 25 0 chr12 76230988 76231191 -67555264 - MER3 DNA MER1_type 0 209 2 733 189 0 0 chr12 76231277 76231399 -67555056 - FLAM_C SINE Alu -9 124 3 439 232 32 32 chr12 76231560 76231685 -67554770 + MIR SINE MIR 64 188 -74 429 357 36 10 chr12 76231858 76232054 -67554401 - MIR SINE MIR -15 247 47 2282 115 0 6 chr12 76233458 76233771 -67552684 + AluSx SINE Alu 1 311 -1 2158 94 0 0 chr12 76234557 76234832 -67551623 + AluY SINE Alu 1 275 -36 812 69 20 0 chr12 76234832 76234933 -67551522 + AluY SINE Alu 188 290 -21 968 284 72 38 chr12 76235392 76235678 -67550777 + L2 LINE L2 2657 2932 -381 733 251 56 0 chr12 76235678 76235857 -67550598 - MER5A DNA MER1_type 0 189 1 968 284 72 38 chr12 76235857 76236184 -67550271 + L2 LINE L2 2932 3312 -1 247 350 74 46 chr12 76236203 76236526 -67549929 - L2 LINE L2 -1387 1927 1596 587 285 70 66 chr12 76237538 76238384 -67548071 + L1MEd LINE L1 612 1450 -4679 1966 144 10 0 chr12 76238384 76238682 -67547773 + AluSx SINE Alu 1 301 -11 587 285 70 66 chr12 76238682 76238751 -67547704 + L1MEd LINE L1 1450 1517 -4612 1685 199 0 3 chr12 76238812 76239094 -67547361 + AluJb SINE Alu 5 285 -27 406 286 149 0 chr12 76239351 76239606 -67546849 + L1MEd LINE L1 2098 2390 -3739 368 278 94 20 chr12 76239756 76240001 -67546454 + L1MEd LINE L1 2663 2925 -3204 441 295 194 3 chr12 76240135 76240522 -67545933 + L1MEd LINE L1 3271 3731 -2398 1501 196 104 52 chr12 76240522 76240962 -67545493 + L1ME1 LINE L1 5699 6161 -5 697 260 105 20 chr12 76241027 76241435 -67545020 + L1MEd LINE L1 3795 4237 -1892 2241 109 0 0 chr12 76242358 76242660 -67543795 + AluSx SINE Alu 1 302 -10 2369 105 0 0 chr12 76242934 76243240 -67543215 - AluSx SINE Alu -6 306 1 186 343 40 40 chr12 76243860 76243959 -67542496 + L2 LINE L2 2650 2748 -566 680 172 0 9 chr12 76245490 76245606 -67540849 + FLAM_C SINE Alu 11 125 -18 55 0 0 0 chr12 76245606 76245661 -67540794 + AT_rich Low_complexity Low_complexity 1 55 0 2369 54 11 0 chr12 76245672 76245975 -67540480 + AluY SINE Alu 1 306 0 2139 123 7 0 chr12 76246129 76246430 -67540025 - AluSx SINE Alu -8 304 2 251 229 0 0 chr12 76249852 76249900 -67536555 + L2 LINE L2 3210 3257 -15 478 292 247 9 chr12 76250140 76250359 -67536096 - L2 LINE L2 -1 3271 3001 385 265 46 40 chr12 76250344 76250495 -67535960 - L2 LINE L2 -493 2821 2670 * 182 306 81 40 chr12 76250687 76250860 -67535595 - L2 LINE L2 -672 2642 2463 1964 153 0 10 chr12 76250880 76251193 -67535262 + AluJb SINE Alu 3 312 0 2228 108 7 3 chr12 76251377 76251682 -67534773 - AluSg SINE Alu -4 306 1 257 311 296 13 chr12 76251718 76252252 -67534203 + L2 LINE L2 1789 2473 -841 318 243 14 0 chr12 76252252 76252322 -67534133 + L2 LINE L2 2592 2662 -652 1666 186 82 5 chr12 76252339 76252715 -67533740 + MER63B DNA MER1_type 1 405 -31 730 289 92 0 chr12 76252993 76253232 -67533223 - MIR SINE MIR 0 262 2 421 290 8 23 chr12 76253240 76253371 -67533084 + L2 LINE L2 3169 3297 -16 490 277 54 34 chr12 76253739 76253887 -67532568 - L2 LINE L2 0 3272 3122 275 293 127 45 chr12 76254092 76254249 -67532206 + L3b LINE CR1 1245 1414 -169 2245 83 13 17 chr12 76254324 76254624 -67531831 + AluSq SINE Alu 1 299 -14 14932 115 60 49 chr12 76255090 76255308 -67531147 - Tigger2 DNA MER2_type 0 2718 2504 2299 87 10 0 chr12 76255308 76255606 -67530849 + AluSq SINE Alu 2 302 -11 14932 115 60 49 chr12 76255606 76258077 -67528378 - Tigger2 DNA MER2_type -214 2504 1 364 360 52 47 chr12 76258228 76258439 -67528016 - L2 LINE L2 -4 3268 3057 209 186 0 51 chr12 76259620 76259679 -67526776 + A-rich Low_complexity Low_complexity 3 58 0 425 221 96 0 chr12 76259951 76260055 -67526400 + L2 LINE L2 3192 3305 -8 200 323 108 11 chr12 76260087 76260180 -67526275 - L2 LINE L2 0 3272 3171 299 220 156 37 chr12 76260198 76260307 -67526148 + L2 LINE L2 3190 3311 -2 831 205 0 6 chr12 76262814 76262970 -67523485 + AluJb SINE Alu 152 306 -6 21 0 0 0 chr12 76263047 76263068 -67523387 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr12 76263805 76263848 -67522607 + AT_rich Low_complexity Low_complexity 1 43 0 1744 155 3 35 chr12 76265614 76265924 -67520531 + AluJo SINE Alu 1 300 -12 1547 96 0 27 chr12 76266010 76266229 -67520226 + AluSg SINE Alu 1 213 -97 349 160 13 0 chr12 76266915 76266990 -67519465 - L1MB4 LINE L1 -1 6179 6104 2647 84 0 0 chr12 76267030 76267387 -67519068 - L1PA6 LINE L1 -1 6153 5797 777 267 36 0 chr12 76267389 76267636 -67518819 - L1MB4 LINE L1 -64 6116 5861 1173 212 17 4 chr12 76267855 76268162 -67518293 - L1MB4 LINE L1 -335 5839 5510 1004 269 138 42 chr12 76268249 76268269 -67518186 - L2 LINE L2 -17 3296 3279 1715 134 10 86 chr12 76268269 76268582 -67517873 - AluJb SINE Alu -23 289 1 1004 269 138 42 chr12 76268582 76269107 -67517348 - L2 LINE L2 -34 3279 2648 5923 80 82 6 chr12 76269107 76270009 -67516446 - L1PA13 LINE L1 -4 6159 5220 1004 269 138 42 chr12 76270009 76270209 -67516246 - L2 LINE L2 -665 2648 2468 22 35 0 0 chr12 76270600 76270629 -67515826 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 76271450 76271478 -67514977 + AT_rich Low_complexity Low_complexity 1 28 0 260 281 24 37 chr12 76271813 76271895 -67514560 + MIR SINE MIR 71 151 -57 255 250 0 17 chr12 76272082 76272142 -67514313 - MIR SINE MIR -98 164 106 266 375 82 5 chr12 76272402 76272586 -67513869 - L3 LINE CR1 -1300 277 80 2548 58 0 0 chr12 76273503 76273813 -67512642 - AluY SINE Alu -1 310 1 210 136 0 0 chr12 76273971 76274015 -67512440 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 426 165 0 51 chr12 76274020 76274099 -67512356 - FRAM/FAM SINE Alu -100 75 1 292 381 71 21 chr12 76274398 76274637 -67511818 - MIR SINE MIR 0 262 12 346 313 71 50 chr12 76274944 76275126 -67511329 - MER5A DNA MER1_type -1 188 3 279 330 53 14 chr12 76275144 76275353 -67511102 + L2 LINE L2 2174 2390 -924 382 288 150 33 chr12 76275512 76275665 -67510790 + MER5B DNA MER1_type 1 171 -7 1899 140 7 0 chr12 76275810 76276089 -67510366 + AluSx SINE Alu 1 281 -31 212 0 0 35 chr12 76276092 76276121 -67510334 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 492 256 50 28 chr12 76276435 76276615 -67509840 + MER5A DNA MER1_type 5 188 -1 644 166 18 175 chr12 76276625 76276848 -67509607 - MER5A DNA MER1_type -1 188 1 224 162 0 0 chr12 76276868 76276905 -67509550 - L2 LINE L2 -1052 2262 2226 234 325 81 31 chr12 76276913 76277073 -67509382 + L2 LINE L2 2599 2766 -548 191 253 0 80 chr12 76477954 76478029 -67308426 - L2 LINE L2 -2721 593 525 3659 108 0 18 chr12 76489523 76490447 -67296008 + HERVH LTR ERV1 2041 2995 -4718 * 5684 118 2 2 chr12 76490426 76491280 -67295175 + HERVH LTR ERV1 3140 3993 -3720 4223 141 23 0 chr12 76491283 76491929 -67294526 + HERVH LTR ERV1 4489 5149 -2564 1305 143 18 5 chr12 76491930 76492147 -67294308 + HERVH LTR ERV1 5600 5819 -1894 * 2187 101 65 14 chr12 76492145 76492513 -67293942 + HERVH LTR ERV1 7322 7708 -5 2748 78 92 5 chr12 76492518 76492930 -67293525 + LTR7 LTR ERV1 1 448 -2 2772 108 2 4 chr12 76492930 76493418 -67293037 + L1P5 LINE L1 5183 5669 -482 834 90 0 16 chr12 76493419 76493541 -67292914 - LTR7 LTR ERV1 -2 448 329 9451 115 29 31 chr12 76493642 76495243 -67291212 - HERVH LTR ERV1 -6114 1599 1 2738 78 95 5 chr12 76495245 76495656 -67290799 - LTR7 LTR ERV1 -2 448 1 1525 233 24 2 chr12 76495657 76496073 -67290382 - L1 LINE L1 -958 5188 4764 * 2857 196 11 30 chr12 76496066 76496192 -67290263 - L1 LINE L1 -1642 4504 4377 1972 129 41 0 chr12 76496192 76496486 -67289969 - AluSx SINE Alu -6 306 1 2857 196 11 30 chr12 76496486 76496650 -67289805 - L1 LINE L1 -1769 4377 4211 6450 121 7 11 chr12 76496650 76497623 -67288832 - LTR5 LTR ERVK 0 969 1 2857 196 11 30 chr12 76497623 76498029 -67288426 - L1 LINE L1 -1935 4211 3820 2565 231 20 5 chr12 76498027 76498690 -67287765 - L1 LINE L1 -2861 3285 2613 * 628 177 0 9 chr12 76498704 76498817 -67287638 - AluSg/x SINE Alu -2 308 197 570 354 15 42 chr12 76498918 76499178 -67287277 + MER115 DNA AcHobo 197 449 -244 247 196 0 0 chr12 76499250 76499296 -67287159 + MLT1F1 LTR MaLR 522 567 0 356 211 141 51 chr12 76499308 76499464 -67286991 + MER115 DNA AcHobo 494 663 -30 202 323 141 18 chr12 76499784 76500027 -67286428 + L2 LINE L2 2736 2999 -273 23 33 0 0 chr12 76501567 76501597 -67284858 + AT_rich Low_complexity Low_complexity 1 30 0 235 240 180 20 chr12 76503255 76503355 -67283100 - MIR3 SINE MIR -51 157 42 2099 109 4 0 chr12 76503443 76503746 -67282709 + AluSg SINE Alu 6 309 0 206 316 0 0 chr12 76504303 76504360 -67282095 - L2 LINE L2 -11 3302 3246 790 360 58 15 chr12 76504452 76504932 -67281523 + L2 LINE L2 2813 3313 0 21 57 0 0 chr12 76505289 76505324 -67281131 + AT_rich Low_complexity Low_complexity 1 35 0 205 250 0 0 chr12 76505945 76505985 -67280470 - L2 LINE L2 -18 3254 3215 23 0 0 0 chr12 76506159 76506182 -67280273 + AT_rich Low_complexity Low_complexity 1 23 0 324 336 96 0 chr12 76506906 76507010 -67279445 + L2 LINE L2 2912 3025 -288 23 42 0 21 chr12 76507784 76507801 -67278654 + AT_rich Low_complexity Low_complexity 1 17 -30 2200 110 0 0 chr12 76507801 76508093 -67278362 - AluSg SINE Alu -18 292 1 23 42 0 21 chr12 76508093 76508123 -67278332 + AT_rich Low_complexity Low_complexity 17 47 0 580 307 52 29 chr12 76508333 76508642 -67277813 + L2 LINE L2 2997 3312 -1 190 326 129 34 chr12 76509827 76509974 -67276481 - MIR3 SINE MIR -31 177 17 439 263 190 0 chr12 76510643 76510822 -67275633 - L2 LINE L2 0 3313 3101 8456 23 3 0 chr12 76510833 76512179 -67274276 - L1PA3 LINE L1 -422 5733 4386 3353 49 0 0 chr12 76512179 76512587 -67273868 + L1PA3 LINE L1 5746 6155 0 23 33 0 0 chr12 76512807 76512837 -67273618 + AT_rich Low_complexity Low_complexity 1 30 0 720 348 44 27 chr12 76513314 76513736 -67272719 - L2 LINE L2 -264 3008 2586 647 289 82 49 chr12 76514199 76514538 -67271917 + LTR16A LTR ERVL 27 383 -67 1507 143 86 75 chr12 76514538 76514909 -67271546 + THE1C LTR MaLR 1 375 0 647 289 82 49 chr12 76514909 76514974 -67271481 + LTR16A LTR ERVL 383 444 -6 1715 29 0 0 chr12 76515717 76515923 -67270532 - L1PA4 LINE L1 0 6155 5950 24 0 0 0 chr12 76517663 76517687 -67268768 + AT_rich Low_complexity Low_complexity 1 24 0 733 270 81 45 chr12 76518423 76518867 -67267588 - L1MC/D LINE L1 -2029 5779 5320 24 0 0 0 chr12 76519623 76519647 -67266808 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 76519725 76519754 -67266701 + AT_rich Low_complexity Low_complexity 1 29 0 1979 154 0 13 chr12 76520185 76520490 -67265965 + AluSx SINE Alu 1 301 -11 430 297 16 27 chr12 76520826 76520980 -67265475 + MIR SINE MIR 16 167 -66 405 288 25 20 chr12 76520992 76521144 -67265311 + MLT1I LTR MaLR 52 207 -202 875 235 4 91 chr12 76521158 76521401 -67265054 - MER58A DNA MER1_type -1 223 2 294 309 152 39 chr12 76521546 76521750 -67264705 - MIR SINE MIR -16 246 20 21 0 0 0 chr12 76521912 76521933 -67264522 + AT_rich Low_complexity Low_complexity 1 21 0 1386 176 9 74 chr12 76523140 76523463 -67262992 - MER50 LTR ERV1 0 734 433 1276 79 25 113 chr12 76523467 76523570 -67262885 - MER50 LTR ERV1 -515 219 147 2248 99 0 0 chr12 76523570 76523872 -67262583 - AluSq SINE Alu -11 302 1 1276 79 25 113 chr12 76523872 76524008 -67262447 - MER50 LTR ERV1 -587 147 1 31 0 0 0 chr12 76524154 76524185 -67262270 + AT_rich Low_complexity Low_complexity 1 31 0 237 176 39 0 chr12 76524185 76524236 -67262219 - Alu SINE Alu -3 305 253 715 249 43 84 chr12 76524454 76524800 -67261655 + L1ME3A LINE L1 5539 5870 -300 26 0 0 0 chr12 76525864 76525890 -67260565 + AT_rich Low_complexity Low_complexity 1 26 0 247 331 14 0 chr12 76526308 76526447 -67260008 + (TA)n Simple_repeat Simple_repeat 1 141 0 285 248 48 57 chr12 76527760 76527865 -67258590 + L3 LINE CR1 441 544 -1033 356 331 73 28 chr12 76528205 76528453 -67258002 + MLT1J LTR MaLR 229 487 -24 248 343 75 8 chr12 76528592 76528726 -67257729 + L3 LINE CR1 626 768 -809 727 275 163 38 chr12 76528785 76529106 -67257349 - L2 LINE L2 -976 2338 1958 6115 157 52 6 chr12 76529106 76530282 -67256173 + Tigger3b DNA MER2_type 1 1230 -1 727 275 163 38 chr12 76530282 76530353 -67256102 - L2 LINE L2 -1356 1958 1897 377 309 63 0 chr12 76530353 76530479 -67255976 - MER94 DNA DNA 0 134 1 459 309 246 0 chr12 76530480 76530781 -67255674 - L2 LINE L2 -1410 1904 1530 1439 271 37 14 chr12 76530792 76531224 -67255231 + LTR40a LTR ERVL 7 448 -71 4434 146 41 8 chr12 76531241 76532020 -67254435 - L1PB4 LINE L1 -13 6143 5339 331 209 44 22 chr12 76532020 76532111 -67254344 + LTR40a LTR ERVL 427 519 0 24 67 0 0 chr12 76532149 76532194 -67254261 + AT_rich Low_complexity Low_complexity 1 45 0 470 325 89 26 chr12 76532566 76532914 -67253541 - L2 LINE L2 0 3313 2944 2378 159 31 25 chr12 76534507 76534992 -67251463 - L1MA3 LINE L1 -1 7723 7236 1538 97 8 13 chr12 76534992 76535229 -67251226 - MER11A LTR ERVK -1 1265 1030 3151 107 48 17 chr12 76535258 76535918 -67250537 - MER11A LTR ERVK -485 751 1 18620 186 25 15 chr12 76535918 76540694 -67245761 - L1MA3 LINE L1 -481 7242 2515 1888 144 43 27 chr12 76540694 76541063 -67245392 - THE1C LTR MaLR 0 375 1 18620 186 25 15 chr12 76541063 76541592 -67244863 - L1MA3 LINE L1 -5208 2515 1993 1916 136 87 35 chr12 76541592 76541938 -67244517 - THE1B LTR MaLR 0 364 1 7061 170 46 87 chr12 76541938 76543657 -67242798 - THE1B-int LTR MaLR 0 1651 3 2296 137 17 3 chr12 76543659 76544016 -67242439 - THE1B LTR MaLR 0 364 3 18620 186 25 15 chr12 76544016 76544166 -67242289 - L1MA3 LINE L1 -5730 1993 1846 186 43 0 0 chr12 76544166 76544189 -67242266 + (TC)n Simple_repeat Simple_repeat 2 24 0 18620 186 25 15 chr12 76544189 76545636 -67240819 - L1MA3 LINE L1 -5877 1846 242 184 250 67 125 chr12 76546069 76546173 -67240282 - MIR3 SINE MIR -1 207 110 25 0 0 0 chr12 76547260 76547285 -67239170 + AT_rich Low_complexity Low_complexity 1 25 0 648 153 12 112 chr12 76547701 76547871 -67238584 - MSTB-int LTR MaLR -1494 157 5 2324 171 50 0 chr12 76547875 76548279 -67238176 - MSTB LTR MaLR -2 424 1 3278 193 20 5 chr12 76548279 76548920 -67237535 + L1MA3 LINE L1 3577 4227 -1919 245 108 0 0 chr12 76548919 76548956 -67237499 + L1M1 LINE L1 5875 5911 -394 * 2474 201 5 12 chr12 76548964 76549629 -67236826 + L1MA3 LINE L1 4830 5487 -743 4472 138 14 9 chr12 76549630 76550396 -67236059 + L1MA3 LINE L1 5535 6304 -1 995 259 101 30 chr12 76550402 76550458 -67235997 + MLT1C LTR MaLR 108 159 -308 1704 162 13 10 chr12 76550458 76550761 -67235694 - AluJb SINE Alu -8 304 1 995 259 101 30 chr12 76550761 76551040 -67235415 + MLT1C LTR MaLR 159 467 0 568 263 10 145 chr12 76551068 76551372 -67235083 + MLT2F LTR ERVL 283 545 -118 285 29 0 0 chr12 76551413 76551447 -67235008 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr12 76551548 76551569 -67234886 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 76551836 76551868 -67234587 + AT_rich Low_complexity Low_complexity 1 32 0 307 404 38 4 chr12 76552432 76552672 -67233783 - MIR SINE MIR -14 248 1 2136 110 51 28 chr12 76554320 76554674 -67231781 - THE1B LTR MaLR 0 364 3 10694 118 9 4 chr12 76554683 76556247 -67230208 - THE1B-int LTR MaLR -8 1572 1 1909 142 54 26 chr12 76556249 76556601 -67229854 - THE1B LTR MaLR -2 362 1 583 319 66 0 chr12 76556645 76556886 -67229569 - MIR SINE MIR -3 259 3 556 284 25 98 chr12 76556957 76557446 -67229009 + L1M4 LINE L1 3007 3459 -2687 366 23 0 0 chr12 76557827 76557870 -67228585 + (TG)n Simple_repeat Simple_repeat 1 43 0 22 70 0 0 chr12 76558361 76558404 -67228051 + AT_rich Low_complexity Low_complexity 1 43 0 611 26 13 0 chr12 76558800 76558877 -67227578 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 227 56 56 0 chr12 76559428 76559464 -67226991 + CT-rich Low_complexity Low_complexity 3 40 0 28 0 0 0 chr12 76559810 76559838 -67226617 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr12 76559903 76559954 -67226501 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 76561405 76561426 -67225029 + AT_rich Low_complexity Low_complexity 1 21 0 205 174 65 0 chr12 76563377 76563423 -67223032 - L2 LINE L2 0 3272 3224 21 0 0 0 chr12 76563461 76563482 -67222973 + AT_rich Low_complexity Low_complexity 1 21 0 1908 72 16 4 chr12 76565166 76565417 -67221038 + L1PA8 LINE L1 5899 6152 -20 2114 108 10 7 chr12 76565440 76565747 -67220708 + AluSq SINE Alu 1 308 -5 411 207 16 16 chr12 76566082 76566203 -67220252 + GA-rich Low_complexity Low_complexity 2 122 0 447 209 0 0 chr12 76567746 76567832 -67218623 + MER89 LTR ERV1 1 86 -473 * 1760 199 11 6 chr12 76567808 76568160 -67218295 + MER89 LTR ERV1 197 550 -9 2063 163 15 0 chr12 76568171 76568514 -67217941 - MER7A DNA MER2_type 0 346 1 293 214 10 0 chr12 76568589 76568692 -67217763 + (TA)n Simple_repeat Simple_repeat 2 105 0 234 259 172 0 chr12 76568760 76568876 -67217579 - L1ME LINE L1 -557 5605 5470 510 225 164 32 chr12 76568988 76569018 -67217437 - L1ME LINE L1 -1567 4579 4554 1586 200 55 19 chr12 76569018 76569433 -67217022 - MER95 LTR ERV 0 431 2 510 225 164 32 chr12 76569433 76569682 -67216773 - L1ME LINE L1 -1592 4554 4263 550 252 13 32 chr12 76569731 76569886 -67216569 - FRAM SINE Alu -3 173 22 1649 186 11 4 chr12 76570037 76570365 -67216090 - AluJb SINE Alu 0 331 2 206 276 65 6 chr12 76570562 76570732 -67215723 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 24 77 0 0 chr12 76571030 76571082 -67215373 + AT_rich Low_complexity Low_complexity 1 52 0 247 321 9 0 chr12 76571241 76571350 -67215105 - L1ME LINE L1 -3611 2535 2426 270 245 31 71 chr12 76571796 76571894 -67214561 - MER5A DNA MER1_type -82 107 14 300 264 25 50 chr12 76573225 76573346 -67213109 + MLT1J LTR MaLR 393 510 -1 476 307 97 11 chr12 76574377 76574553 -67211902 + MER63A DNA MER1_type 2 192 -18 1516 295 64 21 chr12 76575518 76576373 -67210082 + L1ME1 LINE L1 807 1695 -4887 2876 232 84 31 chr12 76576431 76576483 -67209972 + L1ME1 LINE L1 5042 5090 -1871 1291 267 39 23 chr12 76576483 76576873 -67209582 + MSTD LTR MaLR 1 396 0 2876 232 84 31 chr12 76576873 76578212 -67208243 + L1ME1 LINE L1 5090 6520 -441 3385 111 21 56 chr12 76578212 76578779 -67207676 - LTR10B LTR ERV1 0 547 1 2876 232 84 31 chr12 76578779 76578831 -67207624 + L1ME1 LINE L1 6520 6568 -393 314 228 69 10 chr12 76578831 76578932 -67207523 + L1ME1 LINE L1 6837 6943 -18 23 0 0 0 chr12 76578946 76578969 -67207486 + AT_rich Low_complexity Low_complexity 1 23 0 2002 135 3 3 chr12 76579249 76579545 -67206910 + AluSx SINE Alu 1 296 -16 1213 265 47 23 chr12 76580158 76580267 -67206188 - LTR40a LTR ERVL 0 519 414 313 0 62 21 chr12 76580267 76580315 -67206140 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1213 265 47 23 chr12 76580315 76580547 -67205908 - LTR40a LTR ERVL -105 414 170 2597 124 26 71 chr12 76580547 76581055 -67205400 - LTR29 LTR ERV1 0 622 138 284 341 56 0 chr12 76581031 76581157 -67205298 - MER34 LTR ERV1 -409 133 1 * 504 232 36 29 chr12 76581182 76581320 -67205135 - LTR40a LTR ERVL -380 139 1 231 230 106 44 chr12 76581462 76581575 -67204880 - MIR SINE MIR 0 262 143 1725 215 24 19 chr12 76582649 76583031 -67203424 + MSTD LTR MaLR 11 374 0 217 301 175 0 chr12 76584186 76584289 -67202166 + L2 LINE L2 3189 3309 -4 704 249 27 11 chr12 76585365 76585550 -67200905 + MIR SINE MIR 31 218 -44 342 319 34 8 chr12 76586625 76586744 -67199711 + L2 LINE L2 3192 3313 0 260 300 11 83 chr12 76587412 76587592 -67198863 - MIR SINE MIR -38 224 58 731 241 208 0 chr12 76587893 76588109 -67198346 - MIR SINE MIR 0 262 2 489 332 63 28 chr12 76588179 76588432 -67198023 + MIR SINE MIR 1 262 0 363 189 0 126 chr12 76588870 76588997 -67197458 - HERVH LTR ERV1 -6367 1346 1236 751 279 102 6 chr12 76589103 76589426 -67197029 - L1ME2 LINE L1 -22 6142 5789 2293 96 3 6 chr12 76589470 76589783 -67196672 - AluSp SINE Alu -1 312 1 2771 200 6 13 chr12 76589784 76590309 -67196146 + MER44D DNA MER2_type 19 594 -11 463 242 0 0 chr12 76590362 76590453 -67196002 - Tigger7 DNA MER2_type -1 2490 2400 760 219 115 15 chr12 76590464 76590724 -67195731 - L1ME2 LINE L1 -363 5801 5516 353 299 105 9 chr12 76590721 76590910 -67195545 - L1MDa LINE L1 -2677 4264 4095 * 567 40 0 0 chr12 76590910 76590984 -67195471 + (TC)n Simple_repeat Simple_repeat 1 74 0 234 0 0 0 chr12 76590983 76591009 -67195446 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 353 299 105 9 chr12 76590984 76591153 -67195302 - L1MDa LINE L1 -2846 4095 3899 914 273 61 36 chr12 76591287 76591679 -67194776 - LTR52 LTR ERVL -19 402 1 1496 219 82 62 chr12 76591685 76592366 -67194089 - L1MDa LINE L1 -3161 3780 3086 2032 216 34 55 chr12 76592453 76593126 -67193329 - L1MCb LINE L1 -4981 1583 925 235 253 72 12 chr12 76593132 76593215 -67193240 - L1MCa LINE L1 -5970 456 369 1593 247 65 119 chr12 76593229 76594193 -67192262 - L1MCb LINE L1 -5133 912 1 561 233 35 35 chr12 76594218 76594450 -67192005 - L1MDa LINE L1 -3905 3036 2805 487 270 67 19 chr12 76594505 76594772 -67191683 - L1MDa LINE L1 -4270 2852 2573 244 151 14 123 chr12 76594979 76595052 -67191403 - L1MDa LINE L1 -5430 992 928 351 328 57 53 chr12 76595125 76595424 -67191031 - L1MDa LINE L1 -5997 426 127 1700 166 0 17 chr12 76596293 76596582 -67189873 + AluJo SINE Alu 3 286 -26 4974 193 80 52 chr12 76596620 76597928 -67188527 - L1MC3 LINE L1 -30 7755 6412 216 124 50 74 chr12 76598024 76598145 -67188310 + (CTATA)n Simple_repeat Simple_repeat 4 121 0 216 242 50 0 chr12 76598154 76598253 -67188202 + (TAG)n Simple_repeat Simple_repeat 1 104 0 242 178 21 89 chr12 76598840 76599031 -67187424 + (CTATA)n Simple_repeat Simple_repeat 2 179 0 217 269 54 6 chr12 76598969 76599136 -67187319 + (TAA)n Simple_repeat Simple_repeat 1 175 0 * 349 262 48 0 chr12 76599163 76599331 -67187124 + (TAG)n Simple_repeat Simple_repeat 1 176 0 455 258 62 45 chr12 76599404 76599648 -67186807 + L1M4 LINE L1 2719 2966 -3180 579 188 7 14 chr12 76599656 76599800 -67186655 + GA-rich Low_complexity Low_complexity 2 144 0 1022 295 89 55 chr12 76599801 76600580 -67185875 - L1M4 LINE L1 -5728 814 10 6499 255 84 48 chr12 76600590 76604465 -67181990 - L1MCb LINE L1 -782 5782 1649 2941 146 8 0 chr12 76604477 76604956 -67181499 - L1PB2 LINE L1 -5 6146 5664 2475 80 32 69 chr12 76604956 76605421 -67181034 + LTR7 LTR ERV1 1 448 -2 2470 207 101 4 chr12 76605533 76606049 -67180406 + L1M1 LINE L1 153 718 -6847 1780 160 0 18 chr12 76606054 76606335 -67180120 - AluSx SINE Alu -36 276 1 6461 164 65 13 chr12 76606336 76608875 -67177580 - L1PBb LINE L1 -3532 2671 11 3538 178 8 0 chr12 76608853 76609487 -67176968 - L1PBa LINE L1 -5227 977 339 * 928 223 5 5 chr12 76609490 76609683 -67176772 - L1PBa LINE L1 -6669 194 2 3389 226 53 178 chr12 76609688 76610293 -67176162 - L1MCb LINE L1 -4883 1681 1002 6302 87 26 7 chr12 76610293 76611607 -67174848 - L1PA7 LINE L1 -7 6147 4823 3389 226 53 178 chr12 76611607 76612757 -67173698 - L1MCb LINE L1 -5562 1002 8 2193 116 0 0 chr12 76614173 76614467 -67171988 - AluSc SINE Alu -15 294 1 2150 148 95 5 chr12 76614770 76615161 -67171294 + MSTB LTR MaLR 1 426 0 28 0 0 0 chr12 76616797 76616825 -67169630 + AT_rich Low_complexity Low_complexity 1 28 0 865 261 67 58 chr12 76616831 76617382 -67169073 - L1MC4 LINE L1 -71 7971 7416 703 324 88 13 chr12 76618049 76618422 -67168033 + L2 LINE L2 1698 2098 -1216 269 411 30 13 chr12 76618621 76618857 -67167598 + L2 LINE L2 2845 3084 -188 * 386 347 0 20 chr12 76618841 76618991 -67167464 - MIR SINE MIR -30 232 86 1984 170 42 40 chr12 76619611 76620035 -67166420 + MSTC LTR MaLR 4 428 0 413 188 0 0 chr12 76620042 76620111 -67166344 + Tigger2 DNA MER2_type 1 69 -2649 265 200 0 0 chr12 76620109 76620159 -67166296 + Tigger2 DNA MER2_type 2280 2329 -389 * 238 280 0 0 chr12 76620158 76620208 -67166247 + Tigger2 DNA MER2_type 2658 2707 -11 * 307 341 125 22 chr12 76620211 76620411 -67166044 - MIR SINE MIR -44 218 4 450 294 54 40 chr12 76621171 76621388 -67165067 + MIR SINE MIR 8 225 -37 2056 123 13 7 chr12 76622382 76622690 -67163765 + AluSx SINE Alu 1 310 -2 1994 157 126 5 chr12 76623353 76623735 -67162720 + MSTA LTR MaLR 1 428 0 2145 106 0 0 chr12 76623896 76624179 -67162276 + AluSq SINE Alu 12 294 -19 326 287 49 55 chr12 76624561 76624725 -67161730 + MIR3 SINE MIR 59 187 -21 187 218 18 18 chr12 76624889 76624944 -67161511 + L2 LINE L2 1787 1841 -1473 1737 251 131 4 chr12 76625671 76626158 -67160297 + MLT1H LTR MaLR 1 549 0 773 245 59 20 chr12 76627567 76627771 -67158684 + MER20 DNA MER1_type 5 216 -3 4904 219 14 9 chr12 76627859 76629072 -67157383 - L1 LINE L1 -913 5513 4295 4853 143 12 20 chr12 76629076 76629591 -67156864 + L1PB1 LINE L1 5276 5783 -368 252 0 0 0 chr12 76629591 76629619 -67156836 + (TG)n Simple_repeat Simple_repeat 2 29 0 4853 143 12 20 chr12 76629619 76629983 -67156472 + L1PB1 LINE L1 5783 6148 -3 50 0 0 0 chr12 76629986 76630036 -67156419 + AT_rich Low_complexity Low_complexity 1 50 0 2010 140 45 25 chr12 76630050 76630406 -67156049 - THE1B LTR MaLR -1 363 1 396 361 45 12 chr12 76630411 76630655 -67155800 + MIR SINE MIR 11 262 0 4065 143 38 8 chr12 76630831 76631538 -67154917 - L1MC1 LINE L1 0 6333 5606 2412 224 25 34 chr12 76631538 76632575 -67153880 - L1MCa LINE L1 -3153 3273 2250 776 164 96 0 chr12 76632643 76632789 -67153666 - L1MCa LINE L1 -6246 180 21 219 217 0 0 chr12 76632845 76632905 -67153550 + (CA)n Simple_repeat Simple_repeat 1 60 0 212 69 0 0 chr12 76633464 76633493 -67152962 + L2 LINE L2 3285 3313 0 201 205 0 0 chr12 76634075 76634114 -67152341 + L2 LINE L2 3265 3303 -10 335 300 44 0 chr12 76634259 76634349 -67152106 - MER5A DNA MER1_type -83 106 13 1611 196 29 78 chr12 76634574 76635024 -67151431 + MSTB1 LTR MaLR 3 430 -2 201 147 0 0 chr12 76635135 76635169 -67151286 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 385 76 30 0 chr12 76635168 76635234 -67151221 + (GA)n Simple_repeat Simple_repeat 1 68 0 21 57 0 0 chr12 76635993 76636028 -67150427 + AT_rich Low_complexity Low_complexity 1 35 0 2283 35 0 7 chr12 76636028 76636311 -67150144 - L1PA4 LINE L1 -2 6153 5873 481 386 42 13 chr12 76636763 76636999 -67149456 + MIR SINE MIR 20 262 0 23 0 0 0 chr12 76637673 76637696 -67148759 + AT_rich Low_complexity Low_complexity 1 23 0 181 357 209 0 chr12 76638607 76638736 -67147719 - L3 LINE CR1 -97 1480 1325 231 288 180 0 chr12 76638802 76638913 -67147542 - L3 LINE CR1 -250 1327 1197 3349 155 34 11 chr12 76639022 76639648 -67146807 + L1MC1 LINE L1 5694 6333 0 633 313 65 27 chr12 76639893 76640296 -67146159 + L1MEd LINE L1 439 856 -5263 211 229 16 49 chr12 76640303 76640425 -67146030 + A-rich Low_complexity Low_complexity 1 118 0 360 308 21 21 chr12 76640825 76640968 -67145487 - MER5B DNA MER1_type -1 177 35 505 286 53 12 chr12 76642196 76642367 -67144088 + MIR SINE MIR 40 217 -45 23 0 0 0 chr12 76642707 76642730 -67143725 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr12 76642764 76642800 -67143655 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 76645632 76645654 -67140801 + AT_rich Low_complexity Low_complexity 1 22 0 754 234 32 130 chr12 76645979 76646318 -67140137 + MLT1A1 LTR MaLR 2 298 -67 11763 31 2 0 chr12 76646318 76648509 -67137946 - L1PA4 LINE L1 0 6155 3969 754 234 32 130 chr12 76648509 76648570 -67137885 + MLT1A1 LTR MaLR 298 363 -2 210 245 43 0 chr12 76649013 76649107 -67137348 + (TTATA)n Simple_repeat Simple_repeat 4 101 0 262 271 135 10 chr12 76650494 76650590 -67135865 - MIR SINE MIR -6 256 149 2236 108 0 0 chr12 76651311 76651616 -67134839 - AluSx SINE Alu -7 305 1 362 283 43 29 chr12 76651622 76651760 -67134695 - MIR SINE MIR -70 192 53 688 201 0 8 chr12 76652269 76652403 -67134052 + FLAM_A SINE Alu 1 133 0 505 270 50 19 chr12 76652613 76652772 -67133683 - MLT1G1 LTR MaLR 0 595 432 1809 137 20 41 chr12 76652783 76653127 -67133328 + MER1B DNA MER1_type 1 337 0 516 271 17 72 chr12 76653163 76653344 -67133111 - MLT1G3 LTR MaLR -324 206 36 2101 212 137 112 chr12 76653496 76654046 -67132409 + L1MC3 LINE L1 6543 7078 -707 409 157 0 56 chr12 76654046 76654135 -67132320 + MLT1F1 LTR MaLR 35 118 -449 2101 212 137 112 chr12 76654135 76654160 -67132295 + L1MC3 LINE L1 7078 7101 -684 2175 54 0 63 chr12 76654160 76654476 -67131979 + AluY SINE Alu 7 302 -9 2101 212 137 112 chr12 76654476 76654723 -67131732 + L1MC3 LINE L1 7101 7341 -444 300 111 0 0 chr12 76654723 76654768 -67131687 + (CA)n Simple_repeat Simple_repeat 1 45 0 2101 212 137 112 chr12 76654768 76655047 -67131408 + L1MC3 LINE L1 7341 7763 -22 294 289 25 25 chr12 76655588 76655708 -67130747 + MLT1J LTR MaLR 378 497 -14 835 181 105 38 chr12 76655708 76655918 -67130537 + MER67D LTR ERV1 1 224 -290 2920 224 35 23 chr12 76655923 76656694 -67129761 - L1 LINE L1 -1579 4567 3788 609 126 21 0 chr12 76656706 76656849 -67129606 + (TA)n Simple_repeat Simple_repeat 2 147 0 418 241 135 0 chr12 76656852 76656985 -67129470 - L1P LINE L1 -2368 3778 3628 3696 181 22 72 chr12 76656987 76658640 -67127815 + L1MB1 LINE L1 4590 6168 0 438 280 24 0 chr12 76658676 76658801 -67127654 + MER67D LTR ERV1 237 364 -150 270 138 21 128 chr12 76658827 76658921 -67127534 + MER67D LTR ERV1 431 514 0 438 311 102 29 chr12 76661085 76661329 -67125126 - MIR SINE MIR 0 262 1 1282 97 0 6 chr12 76662252 76662428 -67124027 + HERVL LTR ERVL 2160 2334 -3320 237 333 89 0 chr12 76662428 76662518 -67123937 - L1PA13 LINE L1 -5684 1890 1793 9297 195 8 4 chr12 76662522 76664123 -67122332 - L1PA13 LINE L1 -5973 1608 1 10157 236 30 11 chr12 76664127 76666808 -67119647 - L1PA13 LINE L1 -1656 5141 2411 2638 125 32 39 chr12 76666808 76667279 -67119176 + MLT2A1 LTR ERVL 1 474 -41 205 266 0 13 chr12 76667280 76667359 -67119096 + (TA)n Simple_repeat Simple_repeat 2 79 0 369 0 0 0 chr12 76667361 76667402 -67119053 + (TG)n Simple_repeat Simple_repeat 2 42 0 3265 297 25 52 chr12 76667414 76668721 -67117734 - L1PA13 LINE L1 -5308 1479 1 1257 229 66 120 chr12 76668799 76670032 -67116423 - L1MC5 LINE L1 -35 7926 6761 1041 338 21 31 chr12 76670156 76670706 -67115749 + L1M3a LINE L1 11 729 -5226 1079 356 38 12 chr12 76671884 76672518 -67113937 + L1MA7 LINE L1 345 880 -5075 731 174 0 0 chr12 76672518 76672639 -67113816 + FRAM SINE Alu 42 162 -14 1921 223 16 25 chr12 76672639 76673205 -67113250 + L1MA7 LINE L1 887 1447 -4518 * 5246 198 68 21 chr12 76673177 76674906 -67111549 + L1MA7 LINE L1 3778 5575 -604 2675 158 25 27 chr12 76678508 76679060 -67107395 + L1MA7 LINE L1 5627 6177 -2 456 223 152 65 chr12 76679117 76679301 -67107154 - MER2 DNA MER2_type 0 345 146 200 367 78 0 chr12 76679356 76679484 -67106971 - L3 LINE CR1 -184 1393 1256 8437 220 44 72 chr12 76680734 76681754 -67104701 + L1M4c LINE L1 21 1068 -5314 1435 208 3 7 chr12 76681754 76682042 -67104413 + AluJb SINE Alu 1 287 -25 8437 220 44 72 chr12 76682042 76682574 -67103881 + L1M4c LINE L1 1068 1613 -4769 312 217 0 17 chr12 76682574 76682634 -67103821 + Tigger5 DNA MER2_type 2265 2323 0 8437 220 44 72 chr12 76682634 76682735 -67103720 + L1M4c LINE L1 1613 1715 -4667 328 269 13 0 chr12 76682735 76682813 -67103642 + Tigger5 DNA MER2_type 2245 2323 0 8437 220 44 72 chr12 76682813 76683656 -67102799 + L1M4c LINE L1 1715 2580 -3802 2537 96 0 0 chr12 76683656 76684010 -67102445 + L1PA7 LINE L1 5801 6154 0 8437 220 44 72 chr12 76684010 76685511 -67100944 + L1M4c LINE L1 2580 4122 -2260 1935 132 63 17 chr12 76685511 76685859 -67100596 - THE1B LTR MaLR 0 364 1 10891 114 8 1 chr12 76685859 76687428 -67099027 - THE1B-int LTR MaLR 0 1580 1 2114 124 51 23 chr12 76687428 76687782 -67098673 - THE1B LTR MaLR 0 364 1 8437 220 44 72 chr12 76687782 76688444 -67098011 + L1M4c LINE L1 4119 4685 -1697 195 69 0 0 chr12 76697368 76697397 -67089058 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr12 76697412 76697438 -67089017 + AT_rich Low_complexity Low_complexity 1 26 0 1785 204 85 14 chr12 76698288 76698724 -67087731 + MLT1C LTR MaLR 1 467 0 275 243 252 9 chr12 76700055 76700166 -67086289 - MER5A DNA MER1_type 0 189 52 606 326 42 17 chr12 76702370 76702606 -67083849 - MIR SINE MIR -15 247 6 382 288 127 5 chr12 76703602 76703807 -67082648 - MER2 DNA MER2_type -1 344 115 24 67 0 0 chr12 76704303 76704348 -67082107 + AT_rich Low_complexity Low_complexity 1 45 0 28 71 0 0 chr12 76704727 76704783 -67081672 + AT_rich Low_complexity Low_complexity 1 56 0 2542 138 39 7 chr12 76704822 76705263 -67081192 - L1PA14 LINE L1 -1 6160 5706 22 35 0 0 chr12 76705619 76705648 -67080807 + AT_rich Low_complexity Low_complexity 1 29 0 220 140 80 20 chr12 76708383 76708433 -67078022 - MIR SINE MIR -71 191 139 1752 229 106 25 chr12 76708457 76709051 -67077404 - LTR48B LTR ERV1 0 644 3 21 0 0 0 chr12 76709976 76709997 -67076458 + AT_rich Low_complexity Low_complexity 1 21 0 224 320 32 48 chr12 76710690 76710815 -67075640 + L2 LINE L2 2808 2930 -342 472 205 134 0 chr12 76711094 76711221 -67075234 - MER103 DNA DNA -20 146 3 25 0 0 0 chr12 76711597 76711622 -67074833 + AT_rich Low_complexity Low_complexity 1 25 0 362 174 92 41 chr12 76712534 76712632 -67073823 - MIR SINE MIR -48 214 112 241 250 0 0 chr12 76713097 76713149 -67073306 - L2 LINE L2 -6 3266 3215 1981 164 36 0 chr12 76713555 76713891 -67072564 + MER7A DNA MER2_type 1 346 0 204 250 0 0 chr12 76715023 76715071 -67071384 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 180 308 0 19 chr12 76715121 76715173 -67071282 - L3 LINE CR1 -2 1575 1525 1433 124 201 34 chr12 76715511 76715874 -67070581 + MER4A-int LTR ERV1 227 686 -5912 1247 248 47 7 chr12 76716022 76716320 -67070135 + MER4A-int LTR ERV1 1852 2161 -4170 5882 111 75 11 chr12 76716370 76717302 -67069153 + MER4A-int LTR ERV1 189 1180 -5578 4935 113 179 154 chr12 76717303 76719189 -67067266 + MER4A-int LTR ERV1 1748 3681 -2917 6782 119 51 20 chr12 76719192 76720381 -67066074 + MER4A-int LTR ERV1 3841 5066 -1532 7222 38 16 1 chr12 76720382 76721392 -67065063 - L1PA4 LINE L1 -647 5508 4483 5485 36 0 0 chr12 76721392 76722078 -67064377 + L1PA4 LINE L1 5495 6155 0 4356 115 70 26 chr12 76722079 76722658 -67063797 + MER4A-int LTR ERV1 3498 4119 -1467 2006 131 7 13 chr12 76722658 76722964 -67063491 + AluSx SINE Alu 1 304 -8 4356 115 70 26 chr12 76722964 76723124 -67063331 + MER4A-int LTR ERV1 4119 4270 -1316 526 124 57 38 chr12 76723096 76723201 -67063254 + MER4A-int LTR ERV1 6490 6596 -2 * 619 113 10 10 chr12 76723208 76723305 -67063150 + MER4A LTR ERV1 2 98 -566 1819 121 3 77 chr12 76723305 76723678 -67062777 + MER4A LTR ERV1 261 664 0 260 173 0 82 chr12 76723724 76723793 -67062662 + MLT2B1 LTR ERVL 401 520 0 457 302 47 0 chr12 76723800 76723949 -67062506 - MIR SINE MIR -81 181 26 1099 182 19 10 chr12 76725865 76726074 -67060381 + MER39B LTR ERV1 438 648 -5 729 301 96 45 chr12 76726264 76726620 -67059835 + L2 LINE L2 2920 3293 -20 490 82 0 0 chr12 76726998 76727071 -67059384 - L1PA8 LINE L1 -3 6169 6097 1486 180 35 46 chr12 76727114 76727459 -67058996 + L1MC2 LINE L1 5992 6332 -12 349 266 133 62 chr12 76727573 76727881 -67058574 + L1M4 LINE L1 2942 3271 -2875 26178 32 16 1 chr12 76728201 76734022 -67052433 - L1PA2 LINE L1 -204 5951 1 290 136 49 0 chr12 76734347 76734428 -67052027 + (TA)n Simple_repeat Simple_repeat 1 85 0 250 295 55 75 chr12 76734760 76735014 -67051441 + MLT1K LTR MaLR 323 571 -17 466 395 59 19 chr12 76735023 76735549 -67050906 + L1M4 LINE L1 3768 4314 -1832 185 56 0 83 chr12 76736449 76736485 -67049970 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr12 76737503 76737554 -67048901 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 481 241 36 95 chr12 76737618 76737892 -67048563 + L1ME LINE L1 5561 5818 -303 798 297 123 14 chr12 76738083 76738440 -67048015 + L2 LINE L2 2461 2856 -458 247 301 266 7 chr12 76738483 76738769 -67047686 + L2 LINE L2 2954 3313 0 2273 70 0 29 chr12 76739450 76739762 -67046693 - AluY SINE Alu -7 304 2 695 264 121 87 chr12 76740347 76740878 -67045577 - MLT1H LTR MaLR 0 549 1 1389 212 70 0 chr12 76741919 76742221 -67044234 + MLT1C LTR MaLR 1 323 -144 603 187 239 0 chr12 76742221 76742376 -67044079 + MLT2C2 LTR ERVL 217 408 -56 679 103 0 10 chr12 76742412 76742509 -67043946 + MER4A LTR ERV1 1 96 -568 1617 130 8 107 chr12 76742511 76742837 -67043618 + MER4A LTR ERV1 261 604 -60 2335 77 17 3 chr12 76742837 76743134 -67043321 - AluSq SINE Alu -12 301 1 1617 130 8 107 chr12 76743134 76743190 -67043265 + MER4A LTR ERV1 604 664 0 1654 91 142 73 chr12 76743193 76743601 -67042854 + MER4A-int LTR ERV1 1 436 -6162 459 0 0 0 chr12 76744356 76744407 -67042048 + (CA)n Simple_repeat Simple_repeat 1 51 0 571 236 146 6 chr12 76744414 76744579 -67041876 + MER5A DNA MER1_type 1 188 -1 2232 100 3 7 chr12 76745202 76745503 -67040952 + AluSc SINE Alu 1 300 -9 5506 188 4 8 chr12 76745946 76747028 -67039427 - L1 LINE L1 -1566 5999 4923 2206 173 51 2 chr12 76747051 76747479 -67038976 + L1P LINE L1 4591 5039 -1107 9976 191 69 21 chr12 76747481 76749142 -67037313 - L1 LINE L1 -5453 2112 338 2316 105 0 0 chr12 76749142 76749446 -67037009 - AluSg SINE Alu -6 304 1 9976 191 69 21 chr12 76749446 76749785 -67036670 - L1 LINE L1 -7227 338 17 279 54 0 0 chr12 76750772 76750809 -67035646 + (TC)n Simple_repeat Simple_repeat 2 38 0 276 188 25 12 chr12 76751060 76751140 -67035315 + (TA)n Simple_repeat Simple_repeat 2 82 0 2268 129 48 25 chr12 76751160 76751556 -67034899 - L1PA11 LINE L1 -3 6171 5767 14208 206 48 18 chr12 76751572 76752188 -67034267 - L1P LINE L1 -1779 4367 3771 234 0 0 0 chr12 76752188 76752214 -67034241 + (TA)n Simple_repeat Simple_repeat 1 26 0 14208 206 48 18 chr12 76752214 76754989 -67031466 - L1P LINE L1 -2375 3771 875 1684 173 26 55 chr12 76755347 76755764 -67030691 + L1MA9 LINE L1 5908 6312 0 249 389 6 29 chr12 76756310 76756485 -67029970 + MER5A DNA MER1_type 17 187 -2 250 279 23 124 chr12 76758727 76758992 -67027463 - MLT1H LTR MaLR -232 317 80 185 164 0 18 chr12 76759085 76759140 -67027315 + GA-rich Low_complexity Low_complexity 1 54 0 426 361 156 27 chr12 76759247 76759870 -67026585 - L2 LINE L2 -695 2619 1917 22 0 0 0 chr12 76759884 76759906 -67026549 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr12 76760357 76760387 -67026068 + AT_rich Low_complexity Low_complexity 1 30 0 41447 40 2 3 chr12 76761576 76767489 -67018966 - L1PA3 LINE L1 -1 6154 253 544 401 26 36 chr12 76769135 76769874 -67016581 + L2 LINE L2 2282 3010 -262 1412 164 34 19 chr12 76769900 76770168 -67016287 - L1PA16 LINE L1 -9 6157 5886 2107 140 46 8 chr12 76770248 76770599 -67015856 - THE1B LTR MaLR 0 364 1 282 286 66 0 chr12 76770636 76770727 -67015728 + L2 LINE L2 3215 3311 -2 372 332 72 64 chr12 76770950 76771296 -67015159 + L2 LINE L2 2446 2794 -520 237 372 115 13 chr12 76771533 76771689 -67014766 + MIR SINE MIR 6 177 -85 236 319 43 26 chr12 76771734 76771850 -67014605 + MIR SINE MIR 131 248 -14 21 0 0 0 chr12 76772843 76772864 -67013591 + AT_rich Low_complexity Low_complexity 1 21 0 312 288 56 95 chr12 76774158 76774443 -67012012 - MLT1J LTR MaLR -212 299 26 1959 34 8 0 chr12 76775663 76775899 -67010556 - L1P LINE L1 -1356 4790 4553 * 3382 50 0 2 chr12 76775894 76776331 -67010124 + L1P LINE L1 4798 5233 -913 1434 140 5 5 chr12 76776331 76776568 -67009887 + AluSp SINE Alu 71 307 0 1908 206 5 34 chr12 76779167 76779575 -67006880 - MSTD LTR MaLR 0 396 1 21 36 0 0 chr12 76779658 76779686 -67006769 + AT_rich Low_complexity Low_complexity 1 28 0 4949 211 36 9 chr12 76779790 76780295 -67006160 - L1MA9 LINE L1 -2 6310 5820 387 0 0 0 chr12 76780295 76780338 -67006117 + (TG)n Simple_repeat Simple_repeat 2 44 0 4949 211 36 9 chr12 76780338 76781879 -67004576 - L1MA9 LINE L1 -492 5820 4204 21 0 0 75 chr12 76782975 76783015 -67003440 + AT_rich Low_complexity Low_complexity 1 37 0 980 171 75 0 chr12 76783248 76783435 -67003020 + MLT2B1 LTR ERVL 1 201 -319 1416 144 5 0 chr12 76783443 76783665 -67002790 + L1PA15 LINE L1 5563 5785 -380 1708 189 3 0 chr12 76783670 76783967 -67002488 + AluJb SINE Alu 5 302 -10 356 155 14 0 chr12 76783967 76784038 -67002417 + GA-rich Low_complexity Low_complexity 1 72 0 2224 158 26 3 chr12 76784041 76784427 -67002028 + L1PA15 LINE L1 5769 6163 -2 672 269 71 11 chr12 76784466 76784649 -67001806 + MLT2B1 LTR ERVL 262 460 -60 324 0 0 0 chr12 76784659 76784695 -67001760 + (CA)n Simple_repeat Simple_repeat 2 37 0 2494 59 0 3 chr12 76785763 76785940 -67000515 - AluY SINE Alu -5 306 129 243 0 0 0 chr12 76785940 76785967 -67000488 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2494 59 0 3 chr12 76785967 76786096 -67000359 - AluY SINE Alu -182 129 1 232 108 40 27 chr12 76786292 76786366 -67000089 + (TA)n Simple_repeat Simple_repeat 2 76 0 22 0 0 0 chr12 76786926 76786948 -66999507 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 76786997 76787021 -66999434 + AT_rich Low_complexity Low_complexity 1 24 0 275 328 61 61 chr12 76788069 76788267 -66998188 + L3 LINE CR1 884 1081 -496 1034 201 22 65 chr12 76788636 76788781 -66997674 + MER20 DNA MER1_type 1 134 -85 2836 149 58 14 chr12 76788781 76789284 -66997171 - MER1A DNA MER1_type 0 527 3 1034 201 22 65 chr12 76789284 76789367 -66997088 + MER20 DNA MER1_type 134 219 0 576 294 104 0 chr12 76790080 76790281 -66996174 - MIR SINE MIR -30 232 11 313 277 10 124 chr12 76790355 76790557 -66995898 - MIR SINE MIR -50 212 34 1739 81 8 8 chr12 76790644 76790892 -66995563 - L1PA13 LINE L1 -3 6160 5913 23 54 0 0 chr12 76791210 76791247 -66995208 + AT_rich Low_complexity Low_complexity 1 37 0 32 75 0 0 chr12 76791516 76791583 -66994872 + AT_rich Low_complexity Low_complexity 1 67 0 241 283 92 50 chr12 76791746 76791866 -66994589 - L2 LINE L2 0 3272 3148 40 49 0 0 chr12 76792089 76792150 -66994305 + AT_rich Low_complexity Low_complexity 1 61 0 5820 53 23 0 chr12 76792150 76792885 -66993570 - L1PA7 LINE L1 -13 6141 5390 3859 109 11 0 chr12 76792884 76793453 -66993002 + L1PA7 LINE L1 4829 5403 -743 * 931 45 58 13 chr12 76795186 76795498 -66990957 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 196 277 151 10 chr12 76797648 76797825 -66988630 + L2 LINE L2 3046 3313 0 243 137 39 0 chr12 76797910 76797961 -66988494 + MADE1 DNA Mariner 28 80 0 3342 188 36 33 chr12 76798715 76799951 -66986504 + L1MB3 LINE L1 4447 5704 -479 1737 227 6 6 chr12 76799951 76800316 -66986139 - MLT1A1 LTR MaLR 0 365 1 3342 188 36 33 chr12 76800316 76800511 -66985944 + L1MB3 LINE L1 5704 5897 -286 55 86 0 0 chr12 76800523 76800662 -66985793 + AT_rich Low_complexity Low_complexity 1 139 0 22 80 0 0 chr12 76800753 76800803 -66985652 + AT_rich Low_complexity Low_complexity 1 50 0 49 43 0 0 chr12 76800892 76800962 -66985493 + AT_rich Low_complexity Low_complexity 1 70 0 1108 134 84 6 chr12 76801948 76802127 -66984328 + THE1B LTR MaLR 1 193 -171 * 1384 173 54 23 chr12 76802124 76802384 -66984071 + THE1B LTR MaLR 89 356 -8 8526 113 7 1 chr12 76802392 76803589 -66982866 + THE1B-int LTR MaLR 1 1204 -376 904 175 62 0 chr12 76803590 76803750 -66982705 + THE1B LTR MaLR 195 364 0 1964 150 0 3 chr12 76804180 76804480 -66981975 - AluSq SINE Alu -14 299 1 21 0 0 0 chr12 76804991 76805012 -66981443 + AT_rich Low_complexity Low_complexity 1 21 0 244 233 0 17 chr12 76805185 76805245 -66981210 + GA-rich Low_complexity Low_complexity 2 60 0 21 36 0 0 chr12 76805402 76805430 -66981025 + AT_rich Low_complexity Low_complexity 1 28 0 510 301 53 8 chr12 76808899 76809032 -66977423 + MER45A DNA AcHobo 1 139 -39 538 51 13 13 chr12 76809033 76809112 -66977343 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 922 168 39 0 chr12 76809112 76809267 -66977188 - AluJb SINE Alu -15 297 137 2198 106 0 0 chr12 76809628 76809951 -66976504 + AluSg SINE Alu 1 323 0 797 340 82 75 chr12 76810224 76811684 -66974771 + L2 LINE L2 676 2145 -1169 1826 114 61 0 chr12 76811713 76811977 -66974478 + AluSp SINE Alu 2 281 -32 194 0 70 47 chr12 76811979 76812022 -66974433 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 391 337 47 21 chr12 76812230 76812420 -66974035 + MLT1J2 LTR MaLR 247 441 -9 275 394 85 0 chr12 76812427 76812592 -66973863 + L2 LINE L2 2791 2969 -345 225 272 37 118 chr12 76812647 76812783 -66973672 + LTR16A1 LTR ERVL 2 126 -331 272 184 138 83 chr12 76812811 76812920 -66973535 + LTR16A1 LTR ERVL 310 424 -33 5611 179 11 12 chr12 76813074 76814236 -66972219 - L1MA4 LINE L1 -6 7713 6549 955 204 30 4 chr12 76814229 76814460 -66971995 + L1 LINE L1 4898 5134 -1012 * 339 226 21 21 chr12 76816873 76816966 -66969489 + L1MC4 LINE L1 6613 6705 -1337 367 125 42 10 chr12 76816966 76817062 -66969393 + (TA)n Simple_repeat Simple_repeat 1 99 0 1827 119 36 11 chr12 76817062 76817340 -66969115 - AluSc SINE Alu -24 285 1 213 286 68 38 chr12 76817666 76817799 -66968656 - MIR SINE MIR -44 218 82 284 289 118 20 chr12 76818229 76818381 -66968074 - MIR SINE MIR 0 262 96 29 28 0 0 chr12 76821866 76821902 -66964553 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr12 76821938 76821987 -66964468 + AT_rich Low_complexity Low_complexity 1 49 0 5156 241 79 30 chr12 76822144 76824643 -66961812 - L1MA4 LINE L1 -2078 5487 2862 26 82 0 0 chr12 76824808 76824869 -66961586 + AT_rich Low_complexity Low_complexity 1 61 0 31 58 0 0 chr12 76825222 76825274 -66961181 + AT_rich Low_complexity Low_complexity 1 52 0 263 208 0 28 chr12 76825475 76825547 -66960908 - LTR67 LTR ERVL -31 526 457 4813 67 0 2 chr12 76826311 76827123 -66959332 - L1PA7 LINE L1 -286 5868 5058 1678 86 55 4 chr12 76827123 76827377 -66959078 + L1PA7 LINE L1 5882 6150 -4 2134 130 3 7 chr12 76827668 76827976 -66958479 - AluSp SINE Alu -6 307 1 880 140 0 0 chr12 76827999 76828135 -66958320 - L1MA1 LINE L1 0 6302 6167 960 68 34 0 chr12 76828146 76828292 -66958163 + L1MA1 LINE L1 6020 6170 -132 235 279 78 65 chr12 76828450 76828604 -66957851 - LTR67 LTR ERVL -14 543 388 218 276 40 40 chr12 76828857 76828933 -66957522 - MIR SINE MIR -112 150 75 24 0 0 0 chr12 76829825 76829849 -66956606 + AT_rich Low_complexity Low_complexity 1 24 0 194 344 0 31 chr12 76829962 76830058 -66956397 + MIR SINE MIR 169 261 -1 28 48 0 0 chr12 76830425 76830467 -66955988 + AT_rich Low_complexity Low_complexity 1 42 0 392 340 73 19 chr12 76831399 76831980 -66954475 - L1ME3A LINE L1 -244 5908 5277 247 218 30 98 chr12 76831997 76832130 -66954325 - L1MB8 LINE L1 0 6178 6055 * 325 321 136 24 chr12 76832114 76832781 -66953674 - L1ME3A LINE L1 -3255 2874 2133 352 276 27 81 chr12 76833143 76833328 -66953127 - L1ME3A LINE L1 -4946 1173 999 1618 170 33 45 chr12 76833507 76833837 -66952618 - MLT2B3 LTR ERVL 0 554 229 907 210 14 41 chr12 76833897 76833945 -66952510 - MLT2D LTR ERVL -340 213 165 914 193 12 0 chr12 76833945 76834106 -66952349 - Ricksha DNA DNA -736 518 356 450 292 89 35 chr12 76834270 76834585 -66951870 - L1ME3A LINE L1 -220 5950 5619 940 309 54 3 chr12 76834620 76834937 -66951518 - LTR40b LTR ERVL 0 462 130 307 188 0 16 chr12 76834982 76835046 -66951409 + L1MC4 LINE L1 6641 6703 -1339 1405 279 177 45 chr12 76835269 76836611 -66949844 - HAL1 LINE L1 -154 2353 835 1957 115 55 33 chr12 76836733 76837097 -66949358 - THE1C LTR MaLR -3 372 1 348 241 41 53 chr12 76837137 76837403 -66949052 + L1ME3A LINE L1 2959 3221 -2925 318 269 17 34 chr12 76837501 76837620 -66948835 + L1ME3A LINE L1 3369 3485 -2661 461 336 82 12 chr12 76837634 76838036 -66948419 + L1ME3A LINE L1 3723 4152 -1994 1632 288 97 15 chr12 76838069 76839052 -66947403 + L1MEc LINE L1 358 1271 -4946 309 272 0 0 chr12 76839058 76839150 -66947305 + L1ME3A LINE L1 5678 5769 -401 1829 257 66 16 chr12 76839153 76839719 -66946736 + L1MA5 LINE L1 1 573 -6636 374 257 46 7 chr12 76839732 76839884 -66946571 + L1MEc LINE L1 1054 1211 -5185 2551 250 24 44 chr12 76839971 76840822 -66945633 + L1MA5 LINE L1 996 2271 -4938 1429 205 24 0 chr12 76840823 76841077 -66945378 + AluSx SINE Alu 1 260 -52 3895 213 42 12 chr12 76841088 76842053 -66944402 + L1MA5 LINE L1 2265 3279 -3929 189 25 25 50 chr12 76842053 76842093 -66944362 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3895 213 42 12 chr12 76842093 76842377 -66944078 + L1MA5 LINE L1 3279 3553 -3655 7730 190 122 11 chr12 76842377 76843937 -66942518 - MER52A LTR ERV1 0 1755 23 6421 197 33 8 chr12 76843941 76846577 -66939878 + L1MA5 LINE L1 3549 7360 -2 594 331 25 7 chr12 76846601 76846885 -66939570 + L1ME3A LINE L1 5773 6061 -109 2753 0 0 117 chr12 76846890 76846993 -66939462 + L1PB4 LINE L1 5246 5394 -1824 2753 173 9 56 chr12 76846993 76847633 -66938822 + L1PB4 LINE L1 6608 7217 -1 2753 0 0 117 chr12 76847633 76848694 -66937761 + L1PB4 LINE L1 5394 7217 -1 4038 68 0 2 chr12 76848730 76849259 -66937196 + L1PA7 LINE L1 5625 6152 -2 2762 71 14 3 chr12 76849290 76849657 -66936798 - L1P3 LINE L1 -390 5764 5394 1251 188 154 31 chr12 76849701 76850026 -66936429 - MLT1A1 LTR MaLR 0 365 1 1137 206 12 23 chr12 76850094 76850113 -66936342 - MLT2D LTR ERVL -22 375 357 276 100 0 0 chr12 76850113 76850153 -66936302 + (TG)n Simple_repeat Simple_repeat 1 40 0 1137 206 12 23 chr12 76850153 76850457 -66935998 - MLT2D LTR ERVL -40 357 1 979 305 82 29 chr12 76850469 76851066 -66935389 + L1ME3A LINE L1 5530 6158 -12 1518 101 0 5 chr12 76851591 76851810 -66934645 + L1PA13 LINE L1 5943 6160 -3 221 279 93 0 chr12 76852231 76852317 -66934138 + L2 LINE L2 33 126 -3188 212 226 0 19 chr12 76852366 76852419 -66934036 + L2 LINE L2 3258 3309 -4 3116 332 92 46 chr12 76852425 76853398 -66933057 + L2 LINE L2 131 1057 -2257 297 0 0 0 chr12 76853398 76853431 -66933024 + (CA)n Simple_repeat Simple_repeat 2 34 0 3116 332 92 46 chr12 76853431 76853599 -66932856 + L2 LINE L2 1057 1216 -2098 322 70 0 0 chr12 76853599 76853642 -66932813 + MADE1 DNA Mariner 34 76 -4 3116 332 92 46 chr12 76853642 76854782 -66931673 + L2 LINE L2 1216 2563 -751 211 240 20 0 chr12 76854828 76854878 -66931577 + L2 LINE L2 3019 3069 -244 1849 159 41 32 chr12 76854954 76855294 -66931161 - THE1B LTR MaLR -21 343 1 9582 173 40 1 chr12 76855294 76856815 -66929640 - THE1B-int LTR MaLR 0 1580 1 2089 130 39 33 chr12 76856815 76857177 -66929278 - THE1B LTR MaLR 0 364 1 324 345 42 18 chr12 76857179 76857344 -66929111 + L2 LINE L2 3144 3312 -1 280 193 88 105 chr12 76857474 76857588 -66928867 + L1MC/D LINE L1 5580 5691 -2117 867 145 45 50 chr12 76857721 76857900 -66928555 - L1MC1 LINE L1 -11 6322 6145 2404 206 10 51 chr12 76857908 76858744 -66927711 + L1MA8 LINE L1 3342 4150 -3415 2678 133 21 23 chr12 76858744 76859179 -66927276 + MLT2A2 LTR ERVL 1 434 -19 284 125 39 58 chr12 76859192 76859296 -66927159 + (TA)n Simple_repeat Simple_repeat 1 102 0 301 103 0 118 chr12 76859296 76859364 -66927091 + MLT2A2 LTR ERVL 394 453 0 4089 102 2 0 chr12 76859364 76859923 -66926532 + HERVL-A2-A2 LTR ERVL 1 560 -5094 * 33511 98 9 2 chr12 76859918 76864489 -66921966 + HERVL-A2-A2 LTR ERVL 1044 5645 -9 3078 104 20 20 chr12 76864498 76864951 -66921504 + MLT2A2 LTR ERVL 1 453 0 11235 185 44 12 chr12 76864951 76868398 -66918057 + L1MA8 LINE L1 4143 7705 -5 2044 107 6 56 chr12 76868523 76868842 -66917613 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 76870053 76870075 -66916380 + AT_rich Low_complexity Low_complexity 1 22 0 210 360 9 63 chr12 76870716 76870827 -66915628 + L2 LINE L2 3132 3236 -36 424 273 0 72 chr12 76870831 76870970 -66915485 - L2 LINE L2 -23 3290 3162 335 342 13 26 chr12 76871364 76871516 -66914939 + L2 LINE L2 3163 3312 -1 519 321 128 31 chr12 76871971 76872298 -66914157 - LTR16A LTR ERVL 0 450 92 2694 156 0 21 chr12 76872532 76872969 -66913486 - MSTC LTR MaLR 0 428 1 16501 187 27 116 chr12 76873445 76878387 -66908068 + L1PA12 LINE L1 1 5026 -2558 231 36 0 0 chr12 76878387 76878415 -66908040 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 16501 187 27 116 chr12 76878415 76880078 -66906377 + L1PA12 LINE L1 5026 6835 -749 777 159 7 7 chr12 76880274 76880442 -66906013 + L1PA11 LINE L1 5240 5407 -743 4860 121 13 12 chr12 76880502 76881270 -66905185 + L1PA11 LINE L1 5406 6174 0 834 232 34 0 chr12 76881613 76881790 -66904665 + MER5A DNA MER1_type 1 183 -6 693 169 28 7 chr12 76881990 76882132 -66904323 - LTR24B LTR ERV1 -7 569 425 2816 161 43 29 chr12 76882132 76882734 -66903721 - MER4B LTR ERV1 0 779 1 1737 147 91 50 chr12 76882734 76883162 -66903293 - LTR24B LTR ERV1 -148 428 1 330 200 0 0 chr12 76883518 76883578 -66902877 - Alu SINE Alu -6 296 237 489 146 117 0 chr12 76884802 76884905 -66901550 - L1MA7 LINE L1 -11 6280 6166 272 300 38 49 chr12 76885117 76885347 -66901108 + MIR SINE MIR 36 262 0 1843 228 23 60 chr12 76887417 76887545 -66898910 - MLT1D LTR MaLR -3 502 371 2569 160 14 5 chr12 76887545 76887969 -66898486 + MSTA LTR MaLR 1 428 0 1843 228 23 60 chr12 76887969 76888357 -66898098 - MLT1D LTR MaLR -134 371 5 21 82 0 0 chr12 76888601 76888650 -66897805 + AT_rich Low_complexity Low_complexity 1 49 0 1061 216 97 55 chr12 76888837 76889258 -66897197 + HsTC2 DNA Tc2 1283 1897 -1 22 56 0 0 chr12 76889881 76889917 -66896538 + AT_rich Low_complexity Low_complexity 1 36 0 3845 234 38 12 chr12 76890077 76891840 -66894615 - L1MA9 LINE L1 -30 6282 4465 227 204 0 0 chr12 76891840 76891889 -66894566 + T-rich Low_complexity Low_complexity 1 49 0 624 220 18 10 chr12 76891923 76892201 -66894254 - L1PA2 LINE L1 -18 6137 5859 186 103 0 0 chr12 76892446 76892475 -66893980 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2440 241 24 19 chr12 76892483 76893201 -66893254 + L1MC3 LINE L1 7056 7776 -9 26 74 0 0 chr12 76893218 76893272 -66893183 + AT_rich Low_complexity Low_complexity 1 54 0 2170 200 18 8 chr12 76893294 76893793 -66892662 + L1 LINE L1 4266 4769 -1377 21 36 0 0 chr12 76894026 76894054 -66892401 + AT_rich Low_complexity Low_complexity 1 28 0 1010 101 0 28 chr12 76894295 76894473 -66891982 + L1P LINE L1 5254 5426 -725 2006 211 12 19 chr12 76894481 76895094 -66891361 + L1P3 LINE L1 119 936 -4939 16368 84 60 8 chr12 76895094 76895282 -66891173 + L1P1 LINE L1 2902 3079 -3076 2082 117 0 4 chr12 76895282 76895614 -66890841 + AluSg SINE Alu 1 331 0 16368 84 60 8 chr12 76895614 76898097 -66888358 + L1P1 LINE L1 3079 5722 -433 10588 23 1 0 chr12 76898198 76899480 -66886975 + L1P LINE L1 2183 3465 -2681 35 0 0 0 chr12 76900341 76900376 -66886079 + AT_rich Low_complexity Low_complexity 1 35 0 3755 258 103 15 chr12 76900449 76901587 -66884868 + L1PA13 LINE L1 2 1239 -5548 294 158 11 32 chr12 76901928 76902023 -66884432 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 33 43 0 0 chr12 76902058 76902105 -66884350 + AT_rich Low_complexity Low_complexity 1 47 0 204 67 0 0 chr12 76902236 76902266 -66884189 + (TG)n Simple_repeat Simple_repeat 2 31 0 570 253 45 119 chr12 76902399 76902711 -66883744 - LTR16A1 LTR ERVL 0 457 169 531 217 58 0 chr12 76903882 76903982 -66882473 - MLT1B LTR MaLR -16 374 264 2267 135 16 16 chr12 76903982 76904346 -66882109 - THE1B LTR MaLR 0 364 1 531 217 58 0 chr12 76904346 76904365 -66882090 - MLT1B LTR MaLR -126 264 248 3793 156 9 11 chr12 76904365 76905034 -66881421 - THE1B-int LTR MaLR -20 1560 893 194 125 0 25 chr12 76905587 76905627 -66880828 + (TA)n Simple_repeat Simple_repeat 1 39 0 570 148 0 0 chr12 76907816 76907917 -66878538 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 1343 196 37 0 chr12 76908171 76908416 -66878039 + AluJb SINE Alu 48 301 -11 21 36 0 0 chr12 76909340 76909368 -66877087 + AT_rich Low_complexity Low_complexity 1 28 0 1460 259 153 5 chr12 76909453 76910124 -66876331 + L1ME3 LINE L1 5392 6162 0 235 301 27 0 chr12 76910165 76910238 -66876217 - MIR SINE MIR -28 234 160 517 152 19 0 chr12 76910244 76910349 -66876106 + CT-rich Low_complexity Low_complexity 3 109 0 2117 109 0 19 chr12 76910355 76910668 -66875787 - AluSc SINE Alu -2 307 1 24 53 0 0 chr12 76911002 76911040 -66875415 + AT_rich Low_complexity Low_complexity 1 38 0 284 328 38 23 chr12 76911144 76911275 -66875180 + MIR SINE MIR 67 199 -63 21 0 0 0 chr12 76912008 76912029 -66874426 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 76912626 76912650 -66873805 + AT_rich Low_complexity Low_complexity 1 24 0 29 32 0 48 chr12 76913524 76913586 -66872869 + AT_rich Low_complexity Low_complexity 1 59 0 24 53 0 0 chr12 76914791 76914829 -66871626 + AT_rich Low_complexity Low_complexity 1 38 0 245 381 64 33 chr12 76915907 76916236 -66870219 + L2 LINE L2 2746 3097 -175 426 39 0 0 chr12 76916392 76916444 -66870011 + (CA)n Simple_repeat Simple_repeat 1 52 0 225 0 0 0 chr12 76916443 76916468 -66869987 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 223 337 12 0 chr12 76916530 76916613 -66869842 + MIR SINE MIR 85 168 -94 28 71 0 0 chr12 76917208 76917264 -66869191 + AT_rich Low_complexity Low_complexity 1 56 0 221 200 60 0 chr12 76918164 76918214 -66868241 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 28 86 0 0 chr12 76918345 76918415 -66868040 + AT_rich Low_complexity Low_complexity 1 70 0 261 0 0 0 chr12 76918433 76918462 -66867993 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 76918615 76918645 -66867810 + AT_rich Low_complexity Low_complexity 1 30 0 243 88 0 0 chr12 76919445 76919479 -66866976 + (TG)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr12 76919592 76919628 -66866827 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 53 0 0 chr12 76919851 76919889 -66866566 + AT_rich Low_complexity Low_complexity 1 38 0 13932 65 77 6 chr12 76920001 76921972 -66864483 + L1P LINE L1 2 2112 -4034 24 53 0 0 chr12 76922269 76922307 -66864148 + AT_rich Low_complexity Low_complexity 1 38 0 1043 301 79 32 chr12 76922371 76922840 -66863615 - LTR16C LTR ERVL 0 491 1 239 291 93 0 chr12 76922953 76923039 -66863416 + L2 LINE L2 3219 3312 -1 2253 58 3 62 chr12 76923148 76923473 -66862982 - AluY SINE Alu -5 306 1 2009 61 0 15 chr12 76923589 76923853 -66862602 + L1PA8 LINE L1 5911 6170 -2 186 191 0 0 chr12 76924504 76924546 -66861909 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 297 333 24 0 chr12 76924884 76925007 -66861448 - MIR SINE MIR 0 262 137 2383 186 5 54 chr12 76925031 76925887 -66860568 + L1M3 LINE L1 4951 5759 -409 21 36 0 0 chr12 76926733 76926761 -66859694 + AT_rich Low_complexity Low_complexity 1 28 0 1104 112 7 0 chr12 76928553 76928731 -66857724 - AluSg/x SINE Alu 0 306 128 6581 68 16 48 chr12 76929397 76931069 -66855386 - L1PA7 LINE L1 -3 6151 4504 30257 25 1 1 chr12 76931176 76936096 -66850359 + L1HS LINE L1 1234 6152 -3 2036 88 20 3 chr12 76936226 76936520 -66849935 - AluY SINE Alu -12 299 1 8958 32 9 0 chr12 76938513 76940364 -66846091 + L1PA3 LINE L1 4290 6150 -5 184 200 0 0 chr12 76941246 76941281 -66845174 - MIR SINE MIR -16 246 212 337 334 25 41 chr12 76941292 76941617 -66844838 - L1ME4a LINE L1 -255 5866 5548 258 318 0 35 chr12 76941911 76941996 -66844459 + L2 LINE L2 3186 3267 -5 286 314 7 7 chr12 76942011 76942148 -66844307 + (TA)n Simple_repeat Simple_repeat 2 138 0 1479 275 37 18 chr12 76942848 76943357 -66843098 - LTR40a LTR ERVL 0 519 1 234 0 0 0 chr12 76943357 76943383 -66843072 + (CA)n Simple_repeat Simple_repeat 2 27 0 191 64 64 21 chr12 76943455 76943502 -66842953 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 261 333 3 45 chr12 76944221 76944376 -66842079 - MLT1J LTR MaLR -92 502 289 265 393 23 12 chr12 76944810 76944983 -66841472 + L2 LINE L2 1487 1661 -1653 1368 178 0 0 chr12 76945027 76945252 -66841203 + AluSg/x SINE Alu 82 306 -6 1979 290 95 13 chr12 76945321 76946045 -66840410 + L2 LINE L2 1799 2593 -721 2521 158 29 5 chr12 76946045 76946463 -66839992 + MSTA LTR MaLR 1 428 0 1979 290 95 13 chr12 76946463 76946518 -66839937 + L2 LINE L2 2593 2642 -672 1264 209 63 8 chr12 76946524 76946887 -66839568 - MER66A LTR ERV1 -5 473 15 537 310 58 65 chr12 76946922 76947396 -66839059 + L2 LINE L2 2673 3152 -161 2173 92 10 13 chr12 76947396 76947699 -66838756 - AluY SINE Alu -9 302 1 537 310 58 65 chr12 76947699 76947749 -66838706 + L2 LINE L2 3152 3201 -112 259 289 141 22 chr12 76948036 76948171 -66838284 + MIR SINE MIR 111 261 -1 982 208 0 5 chr12 76948207 76948404 -66838051 - MER3 DNA MER1_type -13 196 1 2437 94 3 34 chr12 76948535 76948917 -66837538 - L1PB1 LINE L1 0 6151 5782 207 0 0 0 chr12 76948917 76948940 -66837515 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 987 173 0 0 chr12 76948939 76949192 -66837263 + (TA)n Simple_repeat Simple_repeat 2 254 0 1436 180 10 10 chr12 76949204 76949510 -66836945 - L1PB1 LINE L1 -404 5747 5442 * 4269 208 4 41 chr12 76949492 76950644 -66835811 + L1 LINE L1 4149 5258 -888 582 216 26 0 chr12 76950639 76950755 -66835700 - L1P3 LINE L1 -5754 121 3 * 385 359 26 30 chr12 76950773 76951007 -66835448 - MLT1K LTR MaLR -183 405 173 195 186 0 0 chr12 76951096 76951139 -66835316 + (TATG)n Simple_repeat Simple_repeat 2 44 0 309 293 20 10 chr12 76951209 76951308 -66835147 + L2 LINE L2 3214 3313 0 7550 106 4 1 chr12 76951794 76952834 -66833621 - THE1B-int LTR MaLR -537 1043 1 2069 147 48 17 chr12 76952834 76953187 -66833268 - THE1B LTR MaLR 0 364 1 890 220 57 39 chr12 76953197 76953463 -66832992 - MLT1A2 LTR MaLR -123 273 1 1814 301 39 7 chr12 76953471 76954058 -66832397 + MER69 DNA AcHobo 2 607 -1919 691 257 24 50 chr12 76954075 76954413 -66832042 + MER69 DNA AcHobo 2129 2457 -69 321 362 77 30 chr12 76954496 76954963 -66831492 + L1M4 LINE L1 4514 5002 -1144 251 333 48 27 chr12 76955907 76956054 -66830401 + L2 LINE L2 2934 3083 -189 250 302 23 0 chr12 76956058 76956144 -66830311 - MER115 DNA AcHobo 0 693 606 2090 109 7 17 chr12 76956151 76956453 -66830002 + AluSc SINE Alu 1 299 -10 818 155 26 16 chr12 76956525 76956718 -66829737 + L1 LINE L1 4276 4470 -1676 2088 79 17 6 chr12 76956719 76957814 -66828641 + L1PA8A LINE L1 1 1235 -4911 12074 124 56 10 chr12 76957957 76960343 -66826112 + L1PA8A LINE L1 3246 5740 -391 193 227 114 0 chr12 76960651 76960695 -66825760 + L2 LINE L2 3224 3272 0 21 0 0 0 chr12 76960705 76960726 -66825729 + AT_rich Low_complexity Low_complexity 1 21 0 377 312 50 28 chr12 76960893 76961034 -66825421 - MIR SINE MIR -60 202 59 216 182 0 0 chr12 76961332 76961376 -66825079 + (TA)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr12 76961380 76961409 -66825046 + (CA)n Simple_repeat Simple_repeat 2 30 0 654 317 91 35 chr12 76961564 76961883 -66824572 - MLT1J LTR MaLR -174 337 1 183 139 0 0 chr12 76962441 76962477 -66823978 + (TAG)n Simple_repeat Simple_repeat 1 36 0 2300 176 21 19 chr12 76962639 76963066 -66823389 + MSTC LTR MaLR 1 428 0 384 326 170 0 chr12 76964025 76964172 -66822283 - MER5A DNA MER1_type 0 189 18 1433 194 0 74 chr12 76964325 76964661 -66821794 + MER67D LTR ERV1 1 311 -203 357 24 0 0 chr12 76965085 76965127 -66821328 + (TA)n Simple_repeat Simple_repeat 1 42 0 22100 113 10 14 chr12 76965460 76967397 -66819058 - L1P LINE L1 -1613 4533 2615 4689 170 17 41 chr12 76967397 76968375 -66818080 - LTR5 LTR ERVK -14 955 1 22100 113 10 14 chr12 76968375 76969925 -66816530 - L1P LINE L1 -3531 2615 1060 976 160 0 46 chr12 76971840 76972015 -66814440 - AluSg/x SINE Alu -9 303 137 23 33 0 0 chr12 76972627 76972657 -66813798 + AT_rich Low_complexity Low_complexity 1 30 0 41 78 0 0 chr12 76973454 76973544 -66812911 + AT_rich Low_complexity Low_complexity 1 90 0 531 252 19 8 chr12 76974001 76974140 -66812315 + MLT1A2 LTR MaLR 197 465 -40 2223 56 20 39 chr12 76974225 76974530 -66811925 + AluY SINE Alu 1 299 -12 405 235 43 9 chr12 76974983 76975098 -66811357 - MER69 DNA AcHobo -4 2522 2404 * 452 259 140 0 chr12 76975094 76975237 -66811218 - MER69 DNA AcHobo -2356 170 8 6482 91 14 6 chr12 76976190 76977743 -66808712 + L1PA8 LINE L1 4591 6151 -21 563 45 45 0 chr12 76977934 76978023 -66808432 + L1PA8 LINE L1 6080 6172 0 1780 169 3 31 chr12 76978043 76978363 -66808092 + AluJb SINE Alu 1 311 -1 247 358 21 11 chr12 76978433 76978528 -66807927 - MIR SINE MIR -89 173 78 688 354 13 4 chr12 76978556 76978785 -66807670 - MIR SINE MIR -24 238 8 2257 260 52 37 chr12 76979105 76980249 -66806206 + L1ME1 LINE L1 3884 5045 -1101 528 70 0 0 chr12 76980305 76980376 -66806079 - AluJb SINE Alu -10 302 232 905 160 0 7 chr12 76980378 76980522 -66805933 - AluJb SINE Alu -157 155 13 1925 249 27 21 chr12 76980561 76981119 -66805336 + L1ME1 LINE L1 5467 6027 -139 208 250 0 0 chr12 76981185 76981233 -66805222 + GA-rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr12 76981267 76981289 -66805166 + AT_rich Low_complexity Low_complexity 1 22 0 507 307 93 4 chr12 76982248 76982473 -66803982 + MIR SINE MIR 3 247 -15 254 213 0 12 chr12 76983257 76983337 -66803118 + T-rich Low_complexity Low_complexity 3 81 0 284 331 39 15 chr12 76983739 76983869 -66802586 + MLT1K LTR MaLR 258 390 -198 1792 142 14 3 chr12 76984039 76984334 -66802121 + AluSx SINE Alu 12 309 -3 317 397 28 28 chr12 76984981 76985439 -66801016 + L1ME LINE L1 3 460 -5610 209 135 27 0 chr12 76985445 76985482 -66800973 + A-rich Low_complexity Low_complexity 3 40 0 697 158 5 141 chr12 76985747 76985931 -66800524 + AluSg/x SINE Alu 137 295 -17 1228 266 89 41 chr12 76985932 76986597 -66799858 + L1ME2 LINE L1 4461 5157 -989 2099 124 3 3 chr12 76986599 76986906 -66799549 + AluSg SINE Alu 1 307 -3 1993 237 66 68 chr12 76987040 76987162 -66799293 + L1ME2 LINE L1 5387 5508 -656 2196 100 10 3 chr12 76987162 76987473 -66798982 + AluSp SINE Alu 1 313 0 2117 109 0 16 chr12 76987473 76987785 -66798670 + AluY SINE Alu 1 307 -4 1993 237 66 68 chr12 76987785 76988292 -66798163 + L1ME2 LINE L1 5507 6018 -146 682 224 101 85 chr12 76988292 76988717 -66797738 + MER63B DNA MER1_type 1 432 -4 1993 237 66 68 chr12 76988717 76988854 -66797601 + L1ME2 LINE L1 6018 6154 -10 419 209 90 0 chr12 76988999 76989203 -66797252 - L1MB4 LINE L1 -2 6178 5915 1575 181 41 18 chr12 76989235 76989577 -66796878 - MER39 LTR ERV1 0 707 358 330 206 154 29 chr12 76989621 76989757 -66796698 - MER39B LTR ERV1 -493 160 8 3379 55 0 0 chr12 76989772 76990194 -66796261 - L1PA5 LINE L1 0 6154 5733 4969 55 0 3 chr12 76990194 76990834 -66795621 + L1P LINE L1 4546 5183 -963 236 324 9 28 chr12 76990834 76990942 -66795513 - L2 LINE L2 -15 3298 3193 21 0 0 0 chr12 76992405 76992426 -66794029 + AT_rich Low_complexity Low_complexity 1 21 0 786 273 63 66 chr12 76993322 76993717 -66792738 - LTR16A1 LTR ERVL -4 453 60 1418 155 33 97 chr12 76993775 76994161 -66792294 - L1MB3 LINE L1 0 6183 5866 207 139 0 0 chr12 76995422 76995458 -66790997 + (TC)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr12 76995490 76995512 -66790943 + AT_rich Low_complexity Low_complexity 1 22 0 275 359 30 23 chr12 76996399 76996530 -66789925 + L2 LINE L2 1777 1908 -1406 666 286 83 79 chr12 76997087 76997583 -66788872 - MLT1G LTR MaLR -8 582 85 279 193 34 0 chr12 76997741 76997829 -66788626 + CT-rich Low_complexity Low_complexity 3 93 0 186 356 68 58 chr12 76997838 76998029 -66788426 + L2 LINE L2 2611 2803 -511 249 391 42 26 chr12 76998171 76998360 -66788095 - MER91A DNA MER1_type 0 196 5 328 338 48 0 chr12 76998401 76998546 -66787909 + MIR SINE MIR 109 260 -2 4242 18 2 0 chr12 76998994 76999487 -66786968 + L1PA2 LINE L1 5660 6153 -2 237 150 17 50 chr12 76999999 77000059 -66786396 - LTR33 LTR ERVL -8 513 456 2108 175 35 87 chr12 77000075 77000613 -66785842 + MLT2B2 LTR ERVL 4 513 -2 528 339 37 18 chr12 77000711 77000929 -66785526 - LTR33 LTR ERVL -299 222 1 21 71 0 0 chr12 77001073 77001115 -66785340 + AT_rich Low_complexity Low_complexity 1 42 0 226 183 17 50 chr12 77001525 77001585 -66784870 + LTR33 LTR ERVL 456 513 -8 242 163 0 0 chr12 77001672 77001721 -66784734 - L1MC4 LINE L1 -1339 6703 6655 22 0 0 0 chr12 77001837 77001859 -66784596 + AT_rich Low_complexity Low_complexity 1 22 0 1952 264 80 91 chr12 77001887 77003032 -66783423 + L1MCb LINE L1 27 1158 -4887 1453 223 28 56 chr12 77003036 77003732 -66782723 + L1MCb LINE L1 1236 2317 -4248 22 56 0 0 chr12 77004262 77004298 -66782157 + AT_rich Low_complexity Low_complexity 1 36 0 510 234 120 26 chr12 77004526 77004718 -66781737 - MER63A DNA MER1_type 0 210 1 3778 160 18 9 chr12 77004920 77005589 -66780866 - L1PA16 LINE L1 -3 6866 6192 817 93 0 0 chr12 77005605 77005713 -66780742 - AluY SINE Alu -12 299 192 12609 219 23 22 chr12 77005742 77006569 -66779886 - L1PA16 LINE L1 -678 6191 5366 2272 93 0 7 chr12 77006569 77006870 -66779585 - AluY SINE Alu -12 299 1 12609 219 23 22 chr12 77006870 77007121 -66779334 - L1PA16 LINE L1 -1503 5366 5117 369 0 0 0 chr12 77007121 77007162 -66779293 + (TG)n Simple_repeat Simple_repeat 2 42 0 12609 219 23 22 chr12 77007162 77012380 -66774075 - L1PA16 LINE L1 -1752 5117 1 22 0 0 0 chr12 77012531 77012553 -66773902 + AT_rich Low_complexity Low_complexity 1 22 0 289 263 0 81 chr12 77012643 77012742 -66773713 + MIR3 SINE MIR 114 204 -4 271 237 10 93 chr12 77012865 77012962 -66773493 + MER39B-int LTR ERV1 6043 6131 -200 3327 154 16 24 chr12 77013079 77013686 -66772769 + MER39B LTR ERV1 1 528 -57 2169 79 0 4 chr12 77013978 77014255 -66772200 - AluY SINE Alu -3 308 33 1558 191 23 0 chr12 77014820 77015119 -66771336 - AluJo SINE Alu -6 306 1 563 290 84 9 chr12 77015707 77015921 -66770534 - MER97a DNA MER1_type? -664 230 1 279 364 37 64 chr12 77016168 77016465 -66769990 - L2 LINE L2 -448 2866 2578 1865 329 87 36 chr12 77016575 77016806 -66769649 + L2 LINE L2 386 604 -2710 2274 72 3 35 chr12 77016806 77017125 -66769330 - AluY SINE Alu -2 309 1 1865 329 87 36 chr12 77017125 77018026 -66768429 + L2 LINE L2 604 1575 -1739 1215 241 46 43 chr12 77018152 77018677 -66767778 - MLT1E LTR MaLR -9 645 138 324 48 0 0 chr12 77018730 77018772 -66767683 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 143 0 0 chr12 77018772 77018814 -66767641 + (GA)n Simple_repeat Simple_repeat 1 42 0 227 289 0 13 chr12 77018821 77018897 -66767558 - MLT1E LTR MaLR -579 75 1 681 346 99 12 chr12 77019086 77019511 -66766944 - L2 LINE L2 -847 2467 2006 274 271 29 0 chr12 77020510 77020580 -66765875 + MER94 DNA DNA 1 72 -62 242 191 32 48 chr12 77020608 77020671 -66765784 - MLT1H LTR MaLR 0 549 488 3915 61 16 0 chr12 77021689 77022196 -66764259 + L1PA7 LINE L1 5640 6154 0 4939 183 18 13 chr12 77023242 77024478 -66761977 + L1PA13 LINE L1 1103 2331 -4483 1662 175 3 30 chr12 77024478 77024781 -66761674 - AluJb SINE Alu -17 295 1 4939 183 18 13 chr12 77024781 77028949 -66757506 + L1PA13 LINE L1 2331 6760 -54 308 54 125 0 chr12 77029000 77029056 -66757399 + L1PA15 LINE L1 6103 6165 0 296 351 29 35 chr12 77029265 77029439 -66757016 - MER5A DNA MER1_type -1 188 16 4641 89 44 0 chr12 77029579 77030211 -66756244 + PABL_A LTR ERV1 1 660 0 370 341 50 11 chr12 77031118 77031297 -66755158 - MLT1J LTR MaLR -313 198 13 228 303 0 0 chr12 77032504 77032570 -66753885 + MIR3 SINE MIR 135 200 -8 23 54 0 0 chr12 77033549 77033586 -66752869 + AT_rich Low_complexity Low_complexity 1 37 0 456 283 78 26 chr12 77033632 77033940 -66752515 + L1ME LINE L1 690 1013 -5057 240 301 65 40 chr12 77034045 77034370 -66752085 + L1ME LINE L1 1117 1449 -4631 517 304 71 36 chr12 77034620 77034985 -66751470 + L1MCc LINE L1 31 408 -6015 2134 150 7 63 chr12 77035603 77036030 -66750425 - MER57A LTR ERV1 0 403 1 194 270 48 16 chr12 77036096 77036159 -66750296 - MIR SINE MIR -62 146 82 22 70 0 0 chr12 77036703 77036746 -66749709 + AT_rich Low_complexity Low_complexity 1 43 0 785 230 46 37 chr12 77037537 77037754 -66748701 + MIR SINE MIR 40 258 -4 5015 186 24 4 chr12 77038564 77039992 -66746463 + L1PA16 LINE L1 4713 6166 0 246 32 0 0 chr12 77040258 77040289 -66746166 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1531 159 0 8 chr12 77040300 77040545 -66745910 - AluSx SINE Alu -48 264 22 594 217 0 33 chr12 77040824 77040944 -66745511 + MLT1D LTR MaLR 1 116 -389 15291 78 8 2 chr12 77040944 77043816 -66742639 - L1PA6 LINE L1 -3 6151 3269 1089 88 6 0 chr12 77043816 77043976 -66742479 + L1P LINE L1 2247 2407 -3739 832 252 92 59 chr12 77043976 77044365 -66742090 + MLT1D LTR MaLR 104 505 0 2461 231 86 116 chr12 77044471 77045632 -66740823 + L1M4 LINE L1 1 1126 -5416 215 332 97 60 chr12 77045865 77046133 -66740322 + L2 LINE L2 2597 2874 -440 834 327 80 14 chr12 77046365 77046778 -66739677 + LTR16B LTR ERVL 12 451 -13 1575 191 85 83 chr12 77047013 77047532 -66738923 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr12 77048448 77048470 -66737985 + AT_rich Low_complexity Low_complexity 1 22 0 668 80 10 0 chr12 77048670 77048770 -66737685 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 25 31 0 0 chr12 77049448 77049480 -66736975 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 77049659 77049683 -66736772 + AT_rich Low_complexity Low_complexity 1 24 0 695 257 92 92 chr12 77050844 77051331 -66735124 + L1ME LINE L1 5263 5749 -421 1038 225 117 23 chr12 77051331 77051513 -66734942 - MLT1A2 LTR MaLR 0 374 210 294 29 0 0 chr12 77051513 77051548 -66734907 + (CA)n Simple_repeat Simple_repeat 2 36 0 1038 225 117 23 chr12 77051548 77051707 -66734748 - MLT1A2 LTR MaLR -164 210 1 1784 171 47 44 chr12 77054819 77055182 -66731273 - THE1B LTR MaLR 0 364 1 10590 110 27 1 chr12 77055182 77056722 -66729733 - THE1B-int LTR MaLR 0 1580 1 1824 176 39 25 chr12 77056722 77057081 -66729374 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr12 77057138 77057168 -66729287 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr12 77057243 77057285 -66729170 + AT_rich Low_complexity Low_complexity 1 42 0 1404 217 39 25 chr12 77057413 77057773 -66728682 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr12 77059507 77059528 -66726927 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 77059981 77060003 -66726452 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 77060839 77060893 -66725562 + AT_rich Low_complexity Low_complexity 1 54 0 472 284 101 16 chr12 77061141 77061398 -66725057 - MLT1G LTR MaLR -2 588 228 29 60 0 0 chr12 77062568 77062618 -66723837 + AT_rich Low_complexity Low_complexity 1 50 0 7717 158 8 17 chr12 77062689 77063317 -66723138 - L1P LINE L1 -1275 4871 4239 2376 90 0 0 chr12 77063317 77063617 -66722838 - AluSx SINE Alu -12 300 1 7717 158 8 17 chr12 77063617 77064372 -66722083 - L1P LINE L1 -1907 4239 3501 2360 122 34 3 chr12 77064373 77064726 -66721729 + THE1B LTR MaLR 1 364 0 6889 117 58 59 chr12 77064726 77065912 -66720543 + THE1B-int LTR MaLR 1 1185 -395 1675 140 14 34 chr12 77065912 77066204 -66720251 - THE1B LTR MaLR -78 286 1 22 56 0 0 chr12 77067443 77067479 -66718976 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr12 77068557 77068588 -66717867 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 77070039 77070061 -66716394 + AT_rich Low_complexity Low_complexity 1 22 0 277 402 61 11 chr12 77070983 77071244 -66715211 + L2 LINE L2 2701 2974 -340 28 29 0 0 chr12 77071937 77071972 -66714483 + AT_rich Low_complexity Low_complexity 1 35 0 1997 106 13 30 chr12 77072345 77072647 -66713808 + AluSx SINE Alu 1 297 -15 211 339 160 28 chr12 77073191 77073516 -66712939 + L3 LINE CR1 1178 1545 -32 21 0 0 0 chr12 77075247 77075268 -66711187 + AT_rich Low_complexity Low_complexity 1 21 0 444 304 222 43 chr12 77075452 77075866 -66710589 + L2 LINE L2 2820 3307 -6 227 244 26 13 chr12 77076724 77076802 -66709653 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1334 221 95 52 chr12 77077855 77078338 -66708117 + MLT1D LTR MaLR 2 505 0 24 53 0 0 chr12 77078646 77078684 -66707771 + AT_rich Low_complexity Low_complexity 1 38 0 290 113 0 19 chr12 77079480 77079533 -66706922 + (TA)n Simple_repeat Simple_repeat 1 52 0 6000 49 0 3 chr12 77079533 77080268 -66706187 - L1PA6 LINE L1 -15 6139 5407 2528 60 0 0 chr12 77080291 77080627 -66705828 + L1P LINE L1 5068 5403 -743 1329 211 21 25 chr12 77081133 77081413 -66705042 + AluJo SINE Alu 1 279 -33 1267 128 26 31 chr12 77083283 77083552 -66702903 + THE1C LTR MaLR 1 262 -102 547 100 12 0 chr12 77083548 77083628 -66702827 - LTR24 LTR ERV1 -386 81 1 * 441 196 45 0 chr12 77083628 77083740 -66702715 - L1M4 LINE L1 -844 5302 5186 21 0 0 0 chr12 77083746 77083767 -66702688 + AT_rich Low_complexity Low_complexity 1 21 0 1558 176 0 11 chr12 77083883 77084183 -66702272 - AluJo SINE Alu 0 309 13 632 258 78 7 chr12 77084291 77084470 -66701985 + MIR SINE MIR 55 245 -17 27 62 0 0 chr12 77084496 77084544 -66701911 + AT_rich Low_complexity Low_complexity 1 48 0 921 174 166 86 chr12 77084731 77085104 -66701351 - LTR49 LTR ERV1 -49 546 144 1586 299 39 19 chr12 77136398 77136993 -66649462 + MLT1E2 LTR MaLR 20 626 0 478 327 38 11 chr12 77136996 77137262 -66649193 + L1M3d LINE L1 3 275 -5616 * 2664 269 30 16 chr12 77137235 77138327 -66648128 + L1M3de LINE L1 2 1144 -5509 21 0 0 0 chr12 77138546 77138567 -66647888 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr12 77138876 77138914 -66647541 + AT_rich Low_complexity Low_complexity 1 38 0 2817 7 0 0 chr12 77139089 77139398 -66647057 + AluYa5 SINE Alu 1 309 -2 837 263 16 0 chr12 77139658 77139848 -66646607 - MLT1A2 LTR MaLR 0 374 182 241 328 90 0 chr12 77141406 77141528 -66644927 + L2 LINE L2 3177 3309 -4 381 404 78 21 chr12 77141605 77142026 -66644429 - L2 LINE L2 -19 3253 2809 898 274 78 70 chr12 77142084 77142836 -66643619 - MER20B DNA MER1_type 0 783 26 1443 215 16 3 chr12 77143786 77144107 -66642348 - L1MB5 LINE L1 -8 6166 5842 1714 284 40 10 chr12 77144108 77144244 -66642211 + L1 LINE L1 1380 1510 -5658 566 0 29 0 chr12 77144244 77144313 -66642142 + (CAATT)n Simple_repeat Simple_repeat 2 72 0 1714 284 40 10 chr12 77144313 77144676 -66641779 + L1 LINE L1 1510 1894 -5274 * 1740 229 39 0 chr12 77144671 77145149 -66641306 + L1 LINE L1 5945 6442 -743 4264 219 45 38 chr12 77145385 77147235 -66639220 + L1MB7 LINE L1 3976 5838 -346 1394 283 43 56 chr12 77147228 77147786 -66638669 - L1M2a LINE L1 -5778 1390 840 * 2682 247 47 77 chr12 77147784 77150249 -66636206 - L1M4 LINE L1 -2964 3680 1193 2025 185 52 11 chr12 77150249 77150417 -66636038 - L1MC2 LINE L1 -9 6335 6175 285 118 0 0 chr12 77150417 77150468 -66635987 + (TA)n Simple_repeat Simple_repeat 1 51 0 2025 185 52 11 chr12 77150468 77150759 -66635696 - L1MC2 LINE L1 -169 6175 5857 2682 247 47 77 chr12 77150759 77151127 -66635328 - L1M4 LINE L1 -5451 1193 816 1958 139 3 3 chr12 77151138 77151432 -66635023 + AluSx SINE Alu 1 294 -18 282 261 73 107 chr12 77151595 77151856 -66634599 - L1M4 LINE L1 -6103 543 292 21 0 0 0 chr12 77151992 77152013 -66634442 + AT_rich Low_complexity Low_complexity 1 21 0 366 311 46 33 chr12 77152288 77152439 -66634016 + L3b LINE CR1 1300 1452 -131 255 293 48 48 chr12 77153078 77153245 -66633210 - L1ME4a LINE L1 -196 5925 5759 4194 257 76 66 chr12 77154192 77154811 -66631644 + L1M4 LINE L1 16 627 -6017 2218 151 8 11 chr12 77154811 77155176 -66631279 + THE1B LTR MaLR 1 364 0 4194 257 76 66 chr12 77155176 77156215 -66630240 + L1M4 LINE L1 627 1654 -4990 553 128 0 0 chr12 77156215 77156301 -66630154 - AluY SINE Alu -12 299 214 4194 257 76 66 chr12 77156301 77156553 -66629902 + L1M4 LINE L1 1654 1902 -4742 1831 189 0 0 chr12 77156553 77156865 -66629590 + AluSx SINE Alu 1 312 0 4194 257 76 66 chr12 77156865 77157837 -66628618 + L1M4 LINE L1 1902 3049 -3595 26 30 0 0 chr12 77158214 77158247 -66628208 + AT_rich Low_complexity Low_complexity 1 33 0 293 184 26 26 chr12 77159337 77159413 -66627042 - MER4C LTR ERV1 -109 356 281 533 43 0 14 chr12 77159434 77159504 -66626951 - MER4A LTR ERV1 -241 423 355 2197 75 2 134 chr12 77159541 77159565 -66626890 - MER4A LTR ERV1 -307 357 331 2315 87 3 0 chr12 77159565 77159864 -66626591 - AluSp SINE Alu -13 300 1 2197 75 2 134 chr12 77159864 77160250 -66626205 - MER4A LTR ERV1 -333 331 1 1313 253 75 18 chr12 77160929 77161316 -66625139 + MLT1C LTR MaLR 4 412 -55 2311 67 0 0 chr12 77161768 77162051 -66624404 + AluY SINE Alu 17 299 -12 28 48 0 0 chr12 77163626 77163668 -66622787 + AT_rich Low_complexity Low_complexity 1 42 0 378 272 44 137 chr12 77164080 77164422 -66622033 + L1ME LINE L1 1157 1466 -5481 247 197 61 0 chr12 77164423 77164489 -66621966 + L1ME LINE L1 1333 1402 -5457 344 293 50 21 chr12 77165689 77165829 -66620626 - MIR SINE MIR 0 262 119 34 65 0 0 chr12 77166130 77166192 -66620263 + AT_rich Low_complexity Low_complexity 1 62 0 28 48 0 0 chr12 77166213 77166255 -66620200 + AT_rich Low_complexity Low_complexity 1 42 0 302 317 56 49 chr12 77166393 77166535 -66619920 - MER5A DNA MER1_type -2 187 45 2078 209 46 0 chr12 77166635 77167071 -66619384 + MSTB2 LTR MaLR 2 457 0 22 103 0 0 chr12 77167714 77167792 -66618663 + AT_rich Low_complexity Low_complexity 1 78 0 2029 13 0 0 chr12 77167913 77168137 -66618318 - AluYb8 SINE Alu -9 309 86 3746 117 5 2 chr12 77168244 77168825 -66617630 - L1PA8 LINE L1 -774 5372 4790 5807 80 2 0 chr12 77168825 77169610 -66616845 + L1PA8 LINE L1 5375 6161 -11 26 82 0 0 chr12 77169730 77169791 -66616664 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr12 77170139 77170169 -66616286 + AT_rich Low_complexity Low_complexity 1 30 0 326 286 94 35 chr12 77170239 77170410 -66616045 + L1MC4a LINE L1 5312 5492 -2503 272 192 19 0 chr12 77170859 77170911 -66615544 + L1MC4a LINE L1 6682 6734 -1074 2626 238 35 26 chr12 77170913 77171695 -66614760 + L1MD3 LINE L1 6992 7995 0 186 103 0 0 chr12 77171725 77171754 -66614701 + (CA)n Simple_repeat Simple_repeat 2 30 0 3770 248 30 1 chr12 77171950 77172769 -66613686 + L1M3de LINE L1 931 1773 -4880 10876 205 68 65 chr12 77172789 77173680 -66612775 + L1MA7 LINE L1 2365 3252 -4458 2113 125 7 0 chr12 77173680 77173984 -66612471 - AluSp SINE Alu -7 306 1 10876 205 68 65 chr12 77173984 77177864 -66608591 + L1MA7 LINE L1 3252 7168 -542 897 204 78 111 chr12 77177864 77178324 -66608131 + MER65A LTR ERV1 1 445 0 10876 205 68 65 chr12 77178324 77178869 -66607586 + L1MA7 LINE L1 7168 7710 0 1015 255 47 17 chr12 77178899 77179260 -66607195 + MLT1-int LTR MaLR 4 375 -996 193 316 68 51 chr12 77179685 77179802 -66606653 + L2 LINE L2 3165 3283 -30 2153 124 3 0 chr12 77180097 77180404 -66606051 + AluSq SINE Alu 1 308 -5 41202 67 4 5 chr12 77180497 77186664 -66599791 - L1PA5 LINE L1 0 6154 1 28 29 0 0 chr12 77187066 77187101 -66599354 + AT_rich Low_complexity Low_complexity 1 35 0 2380 102 3 0 chr12 77187455 77187760 -66598695 + AluSp SINE Alu 1 306 -7 22 35 0 0 chr12 77188825 77188854 -66597601 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 77189189 77189210 -66597245 + AT_rich Low_complexity Low_complexity 1 21 0 236 231 0 0 chr12 77189873 77189925 -66596530 - L1MD3 LINE L1 -1325 6670 6619 43 88 0 0 chr12 77190621 77190734 -66595721 + AT_rich Low_complexity Low_complexity 1 113 0 434 248 7 0 chr12 77191946 77192087 -66594368 + GA-rich Low_complexity Low_complexity 3 144 0 451 81 0 0 chr12 77192176 77192238 -66594217 + L1PA5 LINE L1 6091 6152 -2 522 297 96 60 chr12 77192698 77193178 -66593277 - L1ME3A LINE L1 -9 6161 5653 595 283 16 21 chr12 77193178 77193365 -66593090 + MER5A DNA MER1_type 1 186 -3 522 297 96 60 chr12 77193365 77193501 -66592954 - L1ME3A LINE L1 -517 5653 5523 856 291 101 28 chr12 77193522 77193917 -66592538 + LTR16A LTR ERVL 16 439 -11 287 140 163 28 chr12 77193998 77194142 -66592313 - L1ME3A LINE L1 -735 5429 5258 1316 214 56 11 chr12 77194350 77194706 -66591749 + L1MDa LINE L1 1707 2078 -4462 339 324 71 27 chr12 77194908 77195133 -66591322 - L1MDa LINE L1 -4444 2096 1862 585 276 99 26 chr12 77195189 77195548 -66590907 - MLT1I LTR MaLR 0 409 1 272 305 0 11 chr12 77195562 77195657 -66590798 + GA-rich Low_complexity Low_complexity 2 95 0 1897 236 38 52 chr12 77196235 77196736 -66589719 - LTR42 LTR ERVL 0 495 2 192 377 75 20 chr12 77196877 77197023 -66589432 + L2 LINE L2 1405 1558 -1756 328 250 120 0 chr12 77197198 77197298 -66589157 + L2 LINE L2 2107 2218 -1096 486 355 40 38 chr12 77197314 77197660 -66588795 + L2 LINE L2 2832 3178 -135 210 235 0 44 chr12 77197697 77197753 -66588702 + MIR SINE MIR 166 220 -42 2037 122 10 3 chr12 77197753 77198048 -66588407 - AluSx SINE Alu -10 302 6 210 235 0 44 chr12 77198048 77198059 -66588396 + MIR SINE MIR 220 230 -32 438 316 309 7 chr12 77198272 77198686 -66587769 + L2 LINE L2 2219 2757 -557 6069 115 37 0 chr12 77198735 77199983 -66586472 + L1PA10 LINE L1 4873 6166 -2 263 319 17 9 chr12 77199988 77200104 -66586351 + L2 LINE L2 2236 2352 -962 1990 142 7 7 chr12 77200137 77200447 -66586008 - AluSx SINE Alu -2 310 1 2366 171 33 5 chr12 77200955 77201377 -66585078 + Tigger2a DNA MER2_type 1 434 0 328 299 24 55 chr12 77201512 77201639 -66584816 + L2 LINE L2 3190 3312 -1 1968 114 49 35 chr12 77202759 77202918 -66583537 - L1MA9 LINE L1 0 6312 6157 216 0 0 0 chr12 77202918 77202942 -66583513 + (TG)n Simple_repeat Simple_repeat 1 24 0 1968 114 49 35 chr12 77202942 77203149 -66583306 - L1MA9 LINE L1 -155 6157 5941 317 321 25 74 chr12 77206028 77206190 -66580265 - MER52A LTR ERV1 0 1755 1602 226 255 0 102 chr12 77206229 77206327 -66580128 - LTR28 LTR ERV1 -156 864 777 2675 215 149 11 chr12 77206327 77207040 -66579415 - LTR28 LTR ERV1 -209 811 1 3259 102 25 30 chr12 77208542 77209039 -66577416 + L1M1 LINE L1 3067 3563 -4002 2214 75 11 3 chr12 77209039 77209361 -66577094 + AluY SINE Alu 3 326 0 3259 102 25 30 chr12 77209361 77209431 -66577024 + L1M1 LINE L1 3563 3632 -3933 11591 210 34 13 chr12 77209884 77210118 -66576337 + L1M1 LINE L1 3624 3852 -3713 458 0 35 0 chr12 77210118 77210175 -66576280 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 11591 210 34 13 chr12 77210175 77212799 -66573656 + L1M1 LINE L1 3852 6540 -1025 1191 206 91 60 chr12 77212799 77213163 -66573292 + THE1C LTR MaLR 1 375 0 6132 216 25 5 chr12 77213163 77214416 -66572039 + THE1C-int LTR MaLR 1 1278 -373 2024 189 102 32 chr12 77214461 77214953 -66571502 + LTR49 LTR ERV1 69 594 -1 758 277 45 11 chr12 77214958 77215312 -66571143 + L1M4 LINE L1 4226 4591 -1555 253 239 0 22 chr12 77215352 77215444 -66571011 - L1MC4 LINE L1 -1339 6703 6614 241 292 0 0 chr12 77215390 77215479 -66570976 + L1MC4 LINE L1 6614 6702 -1340 * 422 244 8 0 chr12 77215491 77215600 -66570855 - AluJ/FLAM SINE Alu -211 91 13 925 284 40 18 chr12 77215604 77216058 -66570397 + L1M4 LINE L1 4630 5093 -1053 28 0 0 0 chr12 77216058 77216086 -66570369 + AT_rich Low_complexity Low_complexity 1 28 0 2063 129 0 0 chr12 77216087 77216373 -66570082 - AluSx SINE Alu -26 286 1 395 289 28 40 chr12 77216376 77216575 -66569880 + L1M4 LINE L1 5084 5281 -865 1717 173 3 20 chr12 77216575 77216870 -66569585 + AluJb SINE Alu 4 293 -19 395 289 28 40 chr12 77216870 77216923 -66569532 + L1M4 LINE L1 5281 5333 -813 290 283 57 9 chr12 77217072 77217178 -66569277 + MLT1J2 LTR MaLR 312 422 -28 765 245 101 0 chr12 77217240 77217428 -66569027 + MER20 DNA MER1_type 2 208 -11 427 266 151 80 chr12 77217437 77217861 -66568594 + LTR16A1 LTR ERVL 3 456 -1 368 368 63 32 chr12 77217870 77218457 -66567998 + HERV16 LTR ERVL 15 619 -4377 2665 158 45 24 chr12 77218843 77219207 -66567248 + LTR44 LTR ERV1 1 381 -138 2409 110 19 16 chr12 77219207 77219570 -66566885 + THE1B LTR MaLR 1 364 0 2665 158 45 24 chr12 77219570 77219713 -66566742 + LTR44 LTR ERV1 381 519 0 278 300 46 15 chr12 77219718 77219848 -66566607 - MLT1F1 LTR MaLR 0 593 460 494 253 184 73 chr12 77219956 77220217 -66566238 - MLT1F1 LTR MaLR -159 408 119 549 304 45 107 chr12 77220279 77220992 -66565463 - MLT1F1-int LTR MaLR -6 1365 697 275 266 109 16 chr12 77221681 77221809 -66564646 - MLT1F1-int LTR MaLR -1591 144 5 1129 293 143 40 chr12 77221815 77222333 -66564122 - MLT1F1 LTR MaLR -3 564 20 442 289 86 59 chr12 77223115 77223497 -66562958 - LTR68 LTR ERV1 -307 433 38 1857 141 69 33 chr12 77223497 77223859 -66562596 + THE1C LTR MaLR 1 375 0 442 289 86 59 chr12 77223859 77223885 -66562570 - LTR68 LTR ERV1 -702 38 14 310 278 31 17 chr12 77225120 77225276 -66561179 - MLT1J LTR MaLR -335 176 19 6773 225 72 37 chr12 77225355 77227055 -66559400 + L1PA13 LINE L1 83 1842 -4945 3660 236 41 3 chr12 77227063 77227994 -66558461 - L1PA15-16 LINE L1 -3943 2906 1941 267 327 107 7 chr12 77228155 77228305 -66558150 + MIR SINE MIR 98 262 0 26 0 0 0 chr12 77228438 77228464 -66557991 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 77228523 77228546 -66557909 + AT_rich Low_complexity Low_complexity 1 23 0 1963 219 90 30 chr12 77228669 77229271 -66557184 + LTR48B LTR ERV1 7 644 0 23 33 0 0 chr12 77229317 77229347 -66557108 + AT_rich Low_complexity Low_complexity 1 30 0 237 359 39 0 chr12 77229702 77229805 -66556650 + MIR SINE MIR 40 146 -116 306 135 27 27 chr12 77230428 77230502 -66555953 - MER53 DNA DNA -105 84 11 961 321 72 21 chr12 77230517 77231143 -66555312 - L1ME3A LINE L1 -197 5973 5316 1495 266 108 0 chr12 77231447 77231899 -66554556 + MLT1D LTR MaLR 5 505 0 425 273 8 8 chr12 77231899 77232027 -66554428 + MLT1D-int LTR MaLR 1 128 -1243 29493 132 9 63 chr12 77232030 77237599 -66548856 + L1P LINE L1 12 5281 -865 1539 204 71 47 chr12 77237599 77238107 -66548348 + L1MC3 LINE L1 4208 7100 -685 280 189 27 54 chr12 77238120 77238194 -66548261 + MLT1H LTR MaLR 93 164 -385 * 413 228 0 22 chr12 77238176 77238268 -66548187 + L1MC3 LINE L1 7171 7260 -525 2114 209 13 69 chr12 77238275 77238827 -66547628 - MER67B LTR ERV1 -1 578 169 1338 234 57 14 chr12 77238827 77239250 -66547205 + LTR47B LTR ERVL 1 441 -2 2114 209 13 69 chr12 77239250 77239398 -66547057 - MER67B LTR ERV1 -410 169 14 417 236 22 0 chr12 77239397 77239486 -66546969 - MER67A LTR ERV1 -452 91 1 * 2212 211 12 29 chr12 77239487 77240000 -66546455 + L1MC3 LINE L1 7265 7768 -17 493 192 20 20 chr12 77240121 77240220 -66546235 - U6 snRNA snRNA 0 107 9 948 244 74 104 chr12 77240275 77241224 -66545231 - L1MEc LINE L1 -3097 3844 2925 683 253 33 4 chr12 77241231 77241472 -66544983 - L1MEc LINE L1 -4191 2931 2684 25 65 0 0 chr12 77241790 77241836 -66544619 + AT_rich Low_complexity Low_complexity 1 46 0 950 310 81 35 chr12 77241837 77243027 -66543428 - L1MEc LINE L1 -4564 2558 1314 571 247 89 77 chr12 77243053 77243694 -66542761 + L1ME LINE L1 4853 5495 -669 341 222 0 0 chr12 77243695 77243776 -66542679 - L1M LINE L1 -779 5405 5325 388 257 48 59 chr12 77243899 77244086 -66542369 - L1MEc LINE L1 -6228 195 11 23 0 0 0 chr12 77244306 77244329 -66542126 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 77245186 77245217 -66541238 + AT_rich Low_complexity Low_complexity 1 31 0 17246 187 48 33 chr12 77245390 77249950 -66536505 + L1MA1 LINE L1 22 4724 -2939 2643 31 0 0 chr12 77249950 77250267 -66536188 + L1PA4 LINE L1 5839 6155 0 17246 187 48 33 chr12 77250267 77252499 -66533956 + L1MA1 LINE L1 4724 6920 -743 5930 108 18 4 chr12 77252499 77253875 -66532580 + L1PA11 LINE L1 4771 6166 -8 4451 118 44 7 chr12 77253880 77254338 -66532117 + L1MA1 LINE L1 6968 7464 -257 186 43 0 0 chr12 77254338 77254361 -66532094 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4451 118 44 7 chr12 77254361 77254622 -66531833 + L1MA1 LINE L1 7464 7714 -7 308 342 118 11 chr12 77254929 77255116 -66531339 - MLT1I LTR MaLR -119 290 84 22 0 0 0 chr12 77255735 77255757 -66530698 + AT_rich Low_complexity Low_complexity 1 22 0 216 213 0 21 chr12 77255845 77255892 -66530563 + GA-rich Low_complexity Low_complexity 2 47 0 207 0 0 0 chr12 77256111 77256134 -66530321 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 77256682 77256705 -66529750 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 111 0 0 chr12 77257035 77257062 -66529393 + (TA)n Simple_repeat Simple_repeat 2 28 0 1997 127 30 67 chr12 77257255 77257656 -66528799 + MLT1B LTR MaLR 5 390 0 22 56 0 0 chr12 77258328 77258364 -66528091 + AT_rich Low_complexity Low_complexity 1 36 0 186 133 0 0 chr12 77258566 77258596 -66527859 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 438 340 64 55 chr12 77258605 77259185 -66527270 + L1M4 LINE L1 2283 2867 -3279 334 261 51 11 chr12 77259380 77259481 -66526974 - MIR SINE MIR -98 110 4 2640 42 0 0 chr12 77259616 77259952 -66526503 - AluY SINE Alu 0 336 1 2188 119 0 0 chr12 77260460 77260763 -66525692 + AluSg SINE Alu 1 303 -7 255 103 0 0 chr12 77261528 77261567 -66524888 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr12 77261952 77261981 -66524474 + AT_rich Low_complexity Low_complexity 1 29 0 204 198 25 37 chr12 77262121 77262202 -66524253 + (TTTAA)n Simple_repeat Simple_repeat 4 83 0 1309 161 47 33 chr12 77262510 77262784 -66523671 + L1MA9 LINE L1 5798 6075 -237 978 222 30 21 chr12 77263184 77263418 -66523037 - AluJo SINE Alu -23 289 54 26454 128 13 98 chr12 77263975 77266693 -66519762 + L1PA7 LINE L1 1 2949 -3205 736 115 0 0 chr12 77266693 77266797 -66519658 + AluSg/x SINE Alu 196 299 -11 26454 128 13 98 chr12 77266797 77268580 -66517875 + L1PA7 LINE L1 2949 4882 -1272 800 126 0 0 chr12 77268580 77268699 -66517756 - AluSp/q SINE Alu -14 299 181 26454 128 13 98 chr12 77268699 77269909 -66516546 + L1PA7 LINE L1 4882 5290 -864 2302 104 0 0 chr12 77269909 77270206 -66516249 + AluY SINE Alu 1 297 -14 26454 128 13 98 chr12 77270206 77270985 -66515470 + L1PA7 LINE L1 5290 6134 -20 1667 226 19 35 chr12 77271169 77271594 -66514861 - L1MC3 LINE L1 -373 7412 6995 570 227 120 18 chr12 77271712 77271937 -66514518 + Zaphod DNA AcHobo 3476 3723 -308 6817 64 9 0 chr12 77271940 77273040 -66513415 - L1PA7 LINE L1 0 6154 5057 3054 84 27 2 chr12 77273040 77273481 -66512974 + L1PA7 LINE L1 4593 5044 -1102 741 252 78 19 chr12 77273484 77273742 -66512713 + Zaphod DNA AcHobo 3729 4001 -30 2004 140 0 0 chr12 77273933 77274226 -66512229 - AluSx SINE Alu -19 293 1 3959 155 27 16 chr12 77275351 77276124 -66510331 + L1MA5 LINE L1 5519 6300 0 21 0 0 0 chr12 77276161 77276182 -66510273 + AT_rich Low_complexity Low_complexity 1 21 0 1180 343 118 26 chr12 77276522 77277660 -66508795 - L2 LINE L2 -122 3191 1946 202 129 86 14 chr12 77277820 77277890 -66508565 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 242 414 15 0 chr12 77278028 77278161 -66508294 - L2 LINE L2 -2978 336 202 2093 111 21 0 chr12 77278166 77278454 -66508001 - AluSx SINE Alu -18 294 1 229 121 0 0 chr12 77278586 77278619 -66507836 - MER5C DNA MER1_type -5 319 287 197 212 106 0 chr12 77278704 77278770 -66507685 - MER5C DNA MER1_type -207 117 45 23 33 0 0 chr12 77278909 77278939 -66507516 + AT_rich Low_complexity Low_complexity 1 30 0 756 304 58 37 chr12 77280080 77280458 -66505997 + MLT1J1 LTR MaLR 8 393 -53 246 374 109 9 chr12 77282091 77282302 -66504153 - MIR SINE MIR 0 262 31 28 0 0 0 chr12 77282517 77282545 -66503910 + AT_rich Low_complexity Low_complexity 1 28 0 216 243 165 19 chr12 77282646 77282749 -66503706 - MIR SINE MIR -139 123 6 232 278 13 26 chr12 77283298 77283449 -66503006 + A-rich Low_complexity Low_complexity 3 151 0 330 26 0 0 chr12 77283534 77283573 -66502882 + (TA)n Simple_repeat Simple_repeat 1 39 0 479 298 132 15 chr12 77284302 77284507 -66501948 - MIR SINE MIR -29 233 5 283 291 195 24 chr12 77284857 77285067 -66501388 + L2 LINE L2 87 332 -2982 191 409 0 0 chr12 77285670 77285763 -66500692 + L2 LINE L2 1017 1109 -2205 247 316 95 11 chr12 77285843 77285938 -66500517 + MLT1I LTR MaLR 106 208 -201 2018 162 14 8 chr12 77286107 77286466 -66499989 - THE1C LTR MaLR -14 361 1 765 78 9 9 chr12 77286470 77286586 -66499869 - THE1C-int LTR MaLR -4 1576 1461 371 79 0 95 chr12 77286628 77286691 -66499764 - MLT2A2 LTR ERVL 0 453 403 711 57 86 9 chr12 77286740 77286845 -66499610 + MLT2A1 LTR ERVL 3 115 -329 510 93 10 21 chr12 77286845 77286942 -66499513 + (TA)n Simple_repeat Simple_repeat 2 97 0 531 120 0 0 chr12 77286942 77287017 -66499438 + HERVL LTR ERVL 4785 4859 -795 306 48 24 0 chr12 77287016 77287058 -66499397 + HERVL LTR ERVL 4783 4825 -829 * 260 304 0 0 chr12 77287063 77287165 -66499290 + (TA)n Simple_repeat Simple_repeat 2 103 0 219 36 0 0 chr12 77287211 77287239 -66499216 + (TA)n Simple_repeat Simple_repeat 2 29 0 283 262 6 30 chr12 77287252 77287420 -66499035 + (TA)n Simple_repeat Simple_repeat 2 165 0 301 285 0 25 chr12 77287433 77287591 -66498864 + (TA)n Simple_repeat Simple_repeat 2 155 0 308 64 21 0 chr12 77287603 77287650 -66498805 + (TA)n Simple_repeat Simple_repeat 2 49 0 792 99 0 0 chr12 77287650 77287761 -66498694 - MLT2A1 LTR ERVL -329 115 5 33737 79 11 8 chr12 77287765 77292279 -66494176 - HERVL-A1 LTR ERVL 0 5654 1133 1844 100 3 112 chr12 77292279 77292609 -66493846 - AluSp SINE Alu -19 294 1 33737 79 11 8 chr12 77292609 77293746 -66492709 - HERVL-A1 LTR ERVL -4521 1133 1 267 135 19 0 chr12 77293750 77293802 -66492653 - MLT2A1 LTR ERVL -4 440 388 228 75 38 38 chr12 77293810 77293863 -66492592 + (TA)n Simple_repeat Simple_repeat 1 53 0 2699 108 27 15 chr12 77293863 77294269 -66492186 - MLT2A1 LTR ERVL -33 411 1 2720 134 0 0 chr12 77294269 77294679 -66491776 - THE1C-int LTR MaLR -1170 410 1 269 155 52 17 chr12 77294679 77294737 -66491718 - THE1C LTR MaLR 0 355 296 * 1242 161 0 0 chr12 77294726 77294919 -66491536 - THE1C LTR MaLR -182 193 1 1707 307 176 38 chr12 77294942 77295199 -66491256 + L2 LINE L2 1092 1312 -2002 359 0 43 0 chr12 77295199 77295245 -66491210 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 1707 307 176 38 chr12 77295245 77295430 -66491025 + L2 LINE L2 1312 1470 -1844 189 0 0 0 chr12 77295430 77295451 -66491004 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1707 307 176 38 chr12 77295451 77296226 -66490229 + L2 LINE L2 1470 2479 -835 384 328 23 47 chr12 77296232 77296403 -66490052 - MLT1H LTR MaLR -270 279 113 2048 182 35 40 chr12 77296561 77296836 -66489619 + MSTA LTR MaLR 1 275 -153 2465 74 0 6 chr12 77296836 77297147 -66489308 - AluY SINE Alu -2 309 1 2048 182 35 40 chr12 77297147 77297299 -66489156 + MSTA LTR MaLR 275 426 -2 1586 196 50 17 chr12 77297299 77297657 -66488798 + THE1C LTR MaLR 6 375 0 6822 177 63 37 chr12 77297660 77299193 -66487262 + THE1C-int LTR MaLR 4 1575 -5 1642 178 57 33 chr12 77299198 77299564 -66486891 + THE1C LTR MaLR 1 375 0 230 341 57 16 chr12 77299578 77299701 -66486754 - MIR SINE MIR -57 205 78 225 284 80 23 chr12 77300685 77300773 -66485682 + L2 LINE L2 3180 3272 0 21 0 0 0 chr12 77300867 77300888 -66485567 + AT_rich Low_complexity Low_complexity 1 21 0 1608 237 0 16 chr12 77300911 77301282 -66485173 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr12 77301312 77301348 -66485107 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr12 77301771 77301800 -66484655 + AT_rich Low_complexity Low_complexity 1 29 0 497 315 76 32 chr12 77302233 77302484 -66483971 + L2 LINE L2 3046 3307 -6 1447 278 17 61 chr12 77303325 77303916 -66482539 + L1MCb LINE L1 1 565 -5480 243 0 0 0 chr12 77304000 77304027 -66482428 + (GA)n Simple_repeat Simple_repeat 2 28 0 362 241 71 0 chr12 77304035 77304147 -66482308 + L1MCb LINE L1 555 674 -5371 2184 143 81 44 chr12 77304150 77304675 -66481780 + LTR35 LTR ERV1 1 618 0 1136 314 75 15 chr12 77304680 77305244 -66481211 + L1MCb LINE L1 691 1304 -4972 1771 162 0 35 chr12 77305245 77305560 -66480895 + AluJo SINE Alu 1 304 -8 710 214 8 0 chr12 77305633 77305764 -66480691 + FLAM_C SINE Alu 1 132 -1 286 316 0 0 chr12 77306001 77306099 -66480356 - ERVL LTR ERVL -358 5406 5309 1715 331 43 25 chr12 77306211 77308051 -66478404 - ERVL LTR ERVL -607 5157 3219 1064 328 59 52 chr12 77308267 77308482 -66477973 - ERVL LTR ERVL -2590 3174 2962 1204 76 0 0 chr12 77308482 77308640 -66477815 - L1PA8 LINE L1 -3 6169 6012 1064 328 59 52 chr12 77308640 77309413 -66477042 - ERVL LTR ERVL -2802 2962 2179 511 347 53 51 chr12 77309625 77310856 -66475599 - ERVL LTR ERVL -3929 1725 441 393 301 90 6 chr12 77310864 77311030 -66475425 - LTR50 LTR ERVL -156 639 460 489 342 44 15 chr12 77311051 77311323 -66475132 + L1M4 LINE L1 2898 3177 -2969 387 352 103 9 chr12 77311876 77312109 -66474346 - MIR SINE MIR -3 259 5 31 0 0 0 chr12 77312446 77312477 -66473978 + AT_rich Low_complexity Low_complexity 1 31 0 3795 211 18 25 chr12 77312790 77313027 -66473428 + L1MA5A LINE L1 1961 2198 -4650 1840 156 3 3 chr12 77313027 77313338 -66473117 + AluSq SINE Alu 3 313 0 3795 211 18 25 chr12 77313338 77314268 -66472187 + L1MA5A LINE L1 2198 3121 -3727 * 7910 178 48 35 chr12 77314254 77316660 -66469795 + L1MA5A LINE L1 4049 6488 -511 207 0 0 0 chr12 77316660 77316683 -66469772 + (CA)n Simple_repeat Simple_repeat 2 24 0 348 164 34 48 chr12 77316683 77316829 -66469626 + (TA)n Simple_repeat Simple_repeat 1 144 0 2338 160 45 55 chr12 77316829 77317336 -66469119 + L1MA5A LINE L1 6484 6985 -14 1722 128 111 20 chr12 77317413 77317757 -66468698 - THE1C LTR MaLR 0 375 1 9737 133 36 9 chr12 77317757 77319292 -66467163 - THE1C-int LTR MaLR 0 1580 5 1562 145 65 101 chr12 77319298 77319685 -66466770 - THE1C LTR MaLR -2 373 1 380 310 158 36 chr12 77320256 77320617 -66465838 + MLT1I LTR MaLR 5 409 0 196 233 83 0 chr12 77321813 77321873 -66464582 + MIR SINE MIR 137 201 -61 438 187 20 108 chr12 77321883 77322086 -66464369 - MER53 DNA DNA -2 187 3 1593 260 51 54 chr12 77322338 77322931 -66463524 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chr12 77325480 77325501 -66460954 + AT_rich Low_complexity Low_complexity 1 21 0 355 352 80 28 chr12 77325682 77325932 -66460523 + L1MEd LINE L1 406 668 -5704 1687 167 13 6 chr12 77325935 77326253 -66460202 - L1MA6 LINE L1 -1735 4411 4092 5483 173 39 50 chr12 77326253 77326312 -66460143 + L1MA6 LINE L1 4379 4437 -1863 2054 136 42 31 chr12 77326312 77326672 -66459783 - THE1B LTR MaLR 0 364 1 5483 173 39 50 chr12 77326672 77327338 -66459117 + L1MA6 LINE L1 4437 5109 -1191 182 61 0 30 chr12 77327338 77327371 -66459084 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5483 173 39 50 chr12 77327371 77327857 -66458598 + L1MA6 LINE L1 5109 5599 -701 1930 158 17 0 chr12 77327857 77328148 -66458307 + AluSx SINE Alu 1 296 -16 5483 173 39 50 chr12 77328148 77328878 -66457577 + L1MA6 LINE L1 5599 6299 -1 267 319 26 9 chr12 77329058 77329171 -66457284 + L2 LINE L2 3199 3313 0 3373 252 68 22 chr12 77329325 77331522 -66454933 + L1MEd LINE L1 1548 3897 -2485 180 0 0 0 chr12 77331522 77331542 -66454913 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 245 182 0 15 chr12 77331613 77331679 -66454776 + (TA)n Simple_repeat Simple_repeat 1 65 0 201 74 0 0 chr12 77331990 77332017 -66454438 + (A)n Simple_repeat Simple_repeat 1 27 0 358 274 105 16 chr12 77332219 77332409 -66454046 + L1MEd LINE L1 4520 4726 -1656 11186 158 25 46 chr12 77332433 77334571 -66451884 + Tigger1 DNA MER2_type 9 2102 -316 684 159 0 9 chr12 77334583 77334690 -66451765 - AluSq/x SINE Alu -182 130 25 37 76 0 0 chr12 77335382 77335461 -66450994 + AT_rich Low_complexity Low_complexity 1 79 0 756 172 0 0 chr12 77336518 77336646 -66449809 - L1PA10 LINE L1 -12 6156 6029 1382 93 5 0 chr12 77336646 77336840 -66449615 + L1PA10 LINE L1 5787 5981 -187 338 111 0 6 chr12 77336982 77337038 -66449417 - Alu SINE Alu -20 282 236 1110 185 118 19 chr12 77337432 77337702 -66448753 + L1MD2 LINE L1 6060 6356 -3 22 35 0 0 chr12 77337943 77337972 -66448483 + AT_rich Low_complexity Low_complexity 1 29 0 1228 148 56 0 chr12 77338223 77338439 -66448016 + MER30 DNA MER1_type 1 228 -2 21 0 0 0 chr12 77338707 77338728 -66447727 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr12 77339044 77339094 -66447361 + AT_rich Low_complexity Low_complexity 1 50 0 27 29 0 0 chr12 77339165 77339199 -66447256 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 77340464 77340497 -66445958 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr12 77340718 77340743 -66445712 + AT_rich Low_complexity Low_complexity 1 25 0 188 33 0 33 chr12 77340831 77340842 -66445613 + (TA)n Simple_repeat Simple_repeat 1 11 -18 2449 67 0 0 chr12 77340842 77341140 -66445315 + AluY SINE Alu 1 298 -13 188 33 0 33 chr12 77341140 77341158 -66445297 + (TA)n Simple_repeat Simple_repeat 11 29 0 180 0 0 0 chr12 77342415 77342435 -66444020 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4510 175 41 11 chr12 77342435 77343293 -66443162 - MER4D LTR ERV1 -19 884 1 2096 185 33 3 chr12 77343821 77344210 -66442245 - MER57A LTR ERV1 -2 401 1 1244 160 23 39 chr12 77344214 77344365 -66442090 - MER57A-int LTR ERV1 -6 7531 7384 2245 124 25 25 chr12 77344365 77344729 -66441726 + THE1B LTR MaLR 1 364 0 1244 160 23 39 chr12 77344729 77344833 -66441622 - MER57A-int LTR ERV1 -153 7384 7280 688 153 24 8 chr12 77344837 77344961 -66441494 - LTR54B LTR ERV1 -367 131 6 6055 204 17 6 chr12 77344961 77346159 -66440296 - MER57A-int LTR ERV1 -388 7149 5939 1603 205 3 13 chr12 77346335 77346642 -66439813 - MER57A-int LTR ERV1 -1409 6128 5825 6010 180 8 16 chr12 77346963 77348126 -66438329 - MER57A-int LTR ERV1 -1716 5821 4669 2388 195 30 10 chr12 77348126 77348660 -66437795 + LTR27 LTR ERV1 2 1249 -11 859 194 44 110 chr12 77348665 77349030 -66437425 - MER57A-int LTR ERV1 -3569 4551 4211 572 197 121 51 chr12 77349088 77349638 -66436817 - MER57A-int LTR ERV1 -2599 3694 1707 516 282 7 13 chr12 77349752 77349901 -66436554 - MER57A-int LTR ERV1 -2878 3453 3306 5063 103 0 14 chr12 77349912 77350472 -66435983 - LTR8 LTR ERV1 0 691 141 1748 211 128 7 chr12 77350472 77350926 -66435529 - LTR22 LTR ERVK 0 509 1 5063 103 0 14 chr12 77350926 77351066 -66435389 - LTR8 LTR ERV1 -550 141 1 512 222 30 70 chr12 77351111 77351341 -66435114 - MER57A-int LTR ERV1 -4544 2054 1834 418 234 175 7 chr12 77351350 77351487 -66434968 - MER34C LTR ERV1 -268 317 158 265 205 0 103 chr12 77351532 77351610 -66434845 - MER57A-int LTR ERV1 -4116 3421 3352 3833 166 11 52 chr12 77351723 77352504 -66433951 - MER57A-int LTR ERV1 -6707 830 82 2048 173 20 53 chr12 77352573 77353129 -66433326 + MER51A LTR ERV1 1 634 0 1715 162 28 0 chr12 77353129 77353411 -66433044 - MER57A LTR ERV1 -113 290 1 302 266 90 62 chr12 77353599 77353888 -66432567 + L1M4 LINE L1 4297 4593 -1553 25 0 0 0 chr12 77354169 77354194 -66432261 + AT_rich Low_complexity Low_complexity 1 25 0 189 74 0 0 chr12 77354312 77354339 -66432116 + (TA)n Simple_repeat Simple_repeat 1 27 0 1740 171 3 3 chr12 77354340 77354657 -66431798 - AluSx SINE Alu 0 317 1 1199 227 11 29 chr12 77354686 77354959 -66431496 + L1MC1 LINE L1 34 301 -6125 21 0 0 0 chr12 77355005 77355026 -66431429 + AT_rich Low_complexity Low_complexity 1 21 0 2362 85 0 10 chr12 77355243 77355548 -66430907 - AluSq SINE Alu -11 302 1 2915 215 28 52 chr12 77355576 77355793 -66430662 + L1MC1 LINE L1 2453 2674 -3752 834 146 0 7 chr12 77355793 77355930 -66430525 + U8 snRNA snRNA 1 136 0 2915 215 28 52 chr12 77355930 77356534 -66429921 + L1MC1 LINE L1 2674 3254 -3172 1142 196 14 25 chr12 77356550 77356835 -66429620 + L1MC1 LINE L1 3602 3883 -2543 373 193 68 0 chr12 77356838 77356926 -66429529 + L1MC1 LINE L1 4914 5007 -1419 1735 206 62 23 chr12 77357049 77357212 -66429243 + L1MC1 LINE L1 5052 5207 -1406 4722 56 3 0 chr12 77357212 77357801 -66428654 - LTR10C LTR ERV1 0 591 1 1735 206 62 23 chr12 77357801 77358515 -66427940 + L1MC1 LINE L1 5207 5963 -650 999 194 5 54 chr12 77358530 77358752 -66427703 + L1MC1 LINE L1 6382 6592 -21 1464 207 0 37 chr12 77359068 77359392 -66427063 + AluJo SINE Alu 1 312 0 21 36 0 0 chr12 77359840 77359868 -66426587 + AT_rich Low_complexity Low_complexity 1 28 0 2253 77 0 20 chr12 77360519 77360819 -66425636 + AluY SINE Alu 1 294 -17 21 57 0 0 chr12 77361295 77361330 -66425125 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 77361400 77361424 -66425031 + AT_rich Low_complexity Low_complexity 1 24 0 867 196 69 0 chr12 77361621 77361825 -66424630 - Charlie1a DNA MER1_type -480 975 758 2356 231 41 7 chr12 77361825 77362406 -66424049 - Charlie1a DNA MER1_type -848 607 7 256 309 12 0 chr12 77362412 77362493 -66423962 - Charlie8 DNA MER1_type -2185 232 151 225 0 0 0 chr12 77362705 77362730 -66423725 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr12 77363022 77363053 -66423402 + (TAAAAA)n Simple_repeat Simple_repeat 2 32 0 1419 215 55 19 chr12 77364227 77364646 -66421809 - Charlie1b DNA MER1_type -3 520 87 3529 217 66 32 chr12 77364649 77365109 -66421346 - L1MB7 LINE L1 -13 6171 5728 1719 130 0 0 chr12 77365109 77365347 -66421108 + AluSg SINE Alu 56 293 -17 3529 217 66 32 chr12 77365347 77365764 -66420691 - L1MB7 LINE L1 -456 5728 5327 233 139 0 0 chr12 77365764 77365800 -66420655 + MLT2D LTR ERVL 3 38 -376 3529 217 66 32 chr12 77365800 77366112 -66420343 - L1MB7 LINE L1 -857 5327 4905 203 146 24 0 chr12 77366293 77366334 -66420121 + (TA)n Simple_repeat Simple_repeat 2 43 0 308 215 32 43 chr12 77366334 77366427 -66420028 - L1MC4 LINE L1 -1339 6703 6612 246 156 47 0 chr12 77366427 77366491 -66419964 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 311 261 34 11 chr12 77366497 77366585 -66419870 - L1MC4 LINE L1 -1339 6703 6614 311 0 26 0 chr12 77367964 77368003 -66418452 + (TG)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr12 77368092 77368126 -66418329 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr12 77368139 77368161 -66418294 + (TTA)n Simple_repeat Simple_repeat 3 24 0 40439 72 4 4 chr12 77368161 77374295 -66412160 - L1PA5 LINE L1 -18 6136 3 581 264 67 37 chr12 77377762 77378031 -66408424 - MER114 LTR ERV -2 646 370 356 244 22 30 chr12 77378150 77378285 -66408170 + (CATATA)n Simple_repeat Simple_repeat 4 137 0 388 330 138 5 chr12 77381738 77381926 -66404529 + MIR SINE MIR 13 225 -37 2121 207 22 20 chr12 77382031 77382475 -66403980 + MER74C LTR ERVL 4 448 -12 188 350 107 52 chr12 77382555 77383312 -66403143 + L2 LINE L2 1474 2272 -1042 202 114 0 29 chr12 77384021 77384056 -66402399 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 1627 145 50 0 chr12 77384380 77384642 -66401813 + AluSx SINE Alu 1 275 -37 264 122 0 0 chr12 77384646 77384687 -66401768 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr12 77384803 77384828 -66401627 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 312 109 14 chr12 77384971 77385109 -66401346 + MIR SINE MIR 19 169 -93 2126 74 6 45 chr12 77386627 77386939 -66399516 + AluY SINE Alu 1 300 -11 223 338 53 23 chr12 77387388 77387521 -66398934 + MIR SINE MIR 118 254 -8 492 265 19 101 chr12 77388171 77388297 -66398158 - MIR SINE MIR -15 247 151 468 0 0 0 chr12 77388297 77388349 -66398106 + (CA)n Simple_repeat Simple_repeat 1 52 0 492 265 19 101 chr12 77388349 77388479 -66397976 - MIR SINE MIR -111 151 12 225 196 0 0 chr12 77388697 77388743 -66397712 + GA-rich Low_complexity Low_complexity 2 47 0 239 254 42 0 chr12 77390290 77390361 -66396094 - L1ME3A LINE L1 -16 6154 6081 302 241 0 0 chr12 77390462 77390520 -66395935 - MLT1E1 LTR MaLR -548 106 49 493 267 94 100 chr12 77390749 77391109 -66395346 - L1MC4 LINE L1 -966 7076 6719 26 64 0 0 chr12 77391231 77391278 -66395177 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr12 77391487 77391530 -66394925 + AT_rich Low_complexity Low_complexity 1 43 0 889 276 78 38 chr12 77391677 77392072 -66394383 - L1MC4 LINE L1 -1917 5891 5481 2021 218 16 43 chr12 77392602 77393162 -66393293 - L1MA6 LINE L1 -251 6049 5505 * 3245 276 40 10 chr12 77393157 77394319 -66392136 - L1M1 LINE L1 -4472 3093 1898 549 345 50 34 chr12 77394332 77394674 -66391781 - L1M1 LINE L1 -5833 1663 1311 4849 164 23 16 chr12 77394674 77395570 -66390885 - MER4D LTR ERV1 0 903 1 549 345 50 34 chr12 77395570 77395668 -66390787 - L1M1 LINE L1 -6185 1311 1216 1467 178 4 4 chr12 77395707 77395976 -66390479 + AluJb SINE Alu 44 312 0 1408 196 3 57 chr12 77396154 77396470 -66389985 - AluJo SINE Alu -13 299 1 22 35 0 0 chr12 77396571 77396600 -66389855 + AT_rich Low_complexity Low_complexity 1 29 0 3472 166 33 68 chr12 77397580 77398393 -66388062 - LTR1 LTR ERV1 0 785 1 1485 202 39 3 chr12 77398401 77398683 -66387772 + AluJb SINE Alu 2 293 -19 625 298 48 13 chr12 77399009 77399294 -66387161 + MER93a LTR ERV1 92 369 -4 622 230 0 7 chr12 77399505 77399640 -66386815 - AluJo SINE Alu -176 136 3 2084 87 22 0 chr12 77400277 77400552 -66385903 + AluSq SINE Alu 1 281 -32 1144 82 12 0 chr12 77400553 77400723 -66385732 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 204 96 0 58 chr12 77400723 77400775 -66385680 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 308 260 73 10 chr12 77401669 77401765 -66384690 - L1M4 LINE L1 -1534 4612 4511 998 94 0 0 chr12 77401936 77402064 -66384391 + AluSc SINE Alu 1 128 -181 395 319 56 49 chr12 77402075 77402360 -66384095 - L1M4 LINE L1 -1751 4395 4109 1796 264 45 13 chr12 77402636 77403243 -66383212 + L1M4 LINE L1 4277 4902 -1244 16265 129 22 110 chr12 77403718 77407323 -66379132 - L1P LINE L1 -2844 3302 13 21 0 0 0 chr12 77407336 77407357 -66379098 + AT_rich Low_complexity Low_complexity 1 21 0 2019 132 3 3 chr12 77408793 77409081 -66377374 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr12 77410492 77410520 -66375935 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 77411395 77411424 -66375031 + AT_rich Low_complexity Low_complexity 1 29 0 1963 109 6 73 chr12 77411664 77412004 -66374451 - MER1B DNA MER1_type -22 317 1 21 36 0 0 chr12 77412177 77412205 -66374250 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr12 77412782 77412825 -66373630 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr12 77413093 77413122 -66373333 + AT_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr12 77413160 77413190 -66373265 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 8845 221 33 21 chr12 77413887 77415680 -66370775 - L1MC1 LINE L1 -155 6572 4718 1949 120 11 11 chr12 77415680 77415964 -66370491 - AluSg SINE Alu -26 284 1 8845 221 33 21 chr12 77415964 77417642 -66368813 - L1MC1 LINE L1 -2009 4718 3061 1734 263 142 14 chr12 77418288 77418950 -66367505 - L1ME2 LINE L1 -10 6154 5408 9747 223 23 14 chr12 77419162 77422708 -66363747 - L1PA16 LINE L1 0 6166 2596 229 286 56 31 chr12 77422742 77422903 -66363552 - L1MC1 LINE L1 -4512 2028 1864 26 50 0 0 chr12 77423069 77423109 -66363346 + AT_rich Low_complexity Low_complexity 1 40 0 1583 103 40 59 chr12 77423614 77423887 -66362568 - AluY SINE Alu 0 311 44 186 118 0 0 chr12 77424090 77424124 -66362331 + (TATAA)n Simple_repeat Simple_repeat 3 36 0 2182 106 20 0 chr12 77424244 77424547 -66361908 - AluSc SINE Alu 0 309 1 25 31 0 0 chr12 77424557 77424589 -66361866 + AT_rich Low_complexity Low_complexity 1 32 0 2540 50 0 0 chr12 77424903 77425203 -66361252 + AluY SINE Alu 1 300 -11 31 0 0 0 chr12 77426132 77426163 -66360292 + AT_rich Low_complexity Low_complexity 1 31 0 1345 210 20 20 chr12 77427453 77427674 -66358781 - L1 LINE L1 -1662 4484 4261 2477 95 2 81 chr12 77427674 77428083 -66358372 + MER51B LTR ERV1 1 377 0 1345 210 20 20 chr12 77428083 77428213 -66358242 - L1 LINE L1 -1884 4262 4133 825 169 33 13 chr12 77428212 77428395 -66358060 + L1PB4 LINE L1 5845 6024 -137 * 216 280 161 11 chr12 77428576 77428669 -66357786 - MIR SINE MIR -65 197 91 484 389 24 17 chr12 77428965 77429261 -66357194 + L2 LINE L2 2565 2862 -452 369 0 0 0 chr12 77430207 77430248 -66356207 + (CA)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr12 77430274 77430299 -66356156 + AT_rich Low_complexity Low_complexity 1 25 0 1228 224 78 12 chr12 77432077 77432421 -66354034 - MER58D DNA MER1_type 0 386 20 299 241 48 82 chr12 77432532 77432739 -66353716 - MER69 DNA AcHobo -1 2525 2326 1121 319 48 17 chr12 77432739 77433153 -66353302 - MER69 DNA AcHobo -772 454 28 3570 110 30 7 chr12 77434282 77434846 -66351609 - L1MA2 LINE L1 0 6304 5728 275 291 81 27 chr12 77435093 77435241 -66351214 + MIR SINE MIR 70 225 -37 22 0 0 0 chr12 77436317 77436339 -66350116 + AT_rich Low_complexity Low_complexity 1 22 0 24442 164 20 14 chr12 77436341 77442479 -66343976 - L1PA10 LINE L1 -9 6474 1 495 301 69 59 chr12 77442609 77442998 -66343457 + LTR16A LTR ERVL 26 418 -39 1096 289 109 28 chr12 77445112 77445697 -66340758 - L2 LINE L2 0 3313 2688 230 296 0 0 chr12 77448573 77448627 -66337828 - MIR3 SINE MIR -50 158 105 903 48 111 8 chr12 77448876 77449002 -66337453 - MER85 DNA T2_type 0 139 1 2503 230 15 0 chr12 77449704 77450309 -66336146 + L1 LINE L1 4691 5304 -842 1867 144 50 25 chr12 77450322 77450684 -66335771 - THE1C LTR MaLR -4 371 1 701 147 0 0 chr12 77450684 77450793 -66335662 - MSTA LTR MaLR -310 118 10 186 43 0 0 chr12 77450806 77450829 -66335626 + (A)n Simple_repeat Simple_repeat 1 23 0 1989 139 20 0 chr12 77451154 77451457 -66334998 + AluSp SINE Alu 1 309 -4 1154 168 37 109 chr12 77451460 77451605 -66334850 + AluSx SINE Alu 2 113 -189 225 0 0 0 chr12 77451605 77451630 -66334825 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1154 168 37 109 chr12 77451630 77451806 -66334649 + AluSx SINE Alu 113 300 -2 185 323 21 10 chr12 77452716 77452812 -66333643 - MIR SINE MIR -56 206 110 547 159 38 0 chr12 77453252 77453384 -66333071 + (TA)n Simple_repeat Simple_repeat 1 137 0 225 0 0 0 chr12 77454733 77454758 -66331697 + (TA)n Simple_repeat Simple_repeat 2 26 0 3988 165 48 17 chr12 77455043 77455799 -66330656 + MER4E LTR ERV1 1 779 0 704 224 14 0 chr12 77456040 77456187 -66330268 - FRAM SINE Alu -17 149 1 321 281 18 84 chr12 77456260 77456427 -66330028 + L2 LINE L2 2232 2387 -927 1371 209 37 48 chr12 77456466 77456655 -66329800 + MLT1A2 LTR MaLR 1 186 -188 383 0 21 0 chr12 77456655 77456702 -66329753 + (TC)n Simple_repeat Simple_repeat 2 49 0 1371 209 37 48 chr12 77456702 77456867 -66329588 + MLT1A2 LTR MaLR 186 351 -23 192 40 0 0 chr12 77457438 77457463 -66328992 + (TG)n Simple_repeat Simple_repeat 2 26 0 206 322 0 0 chr12 77457598 77457657 -66328798 + CT-rich Low_complexity Low_complexity 4 62 0 229 405 38 8 chr12 77457657 77457788 -66328667 - L2 LINE L2 -1 3271 3137 479 242 24 24 chr12 77458473 77458638 -66327817 - MER69 DNA AcHobo -9 2517 2353 2261 211 25 31 chr12 77458638 77458859 -66327596 - MER67D LTR ERV1 0 514 293 2156 153 28 0 chr12 77458859 77459213 -66327242 - THE1B LTR MaLR 0 364 1 2261 211 25 31 chr12 77459213 77459508 -66326947 - MER67D LTR ERV1 -221 293 1 987 261 69 38 chr12 77459508 77459929 -66326526 - MER69 DNA AcHobo -170 2356 1923 372 223 0 21 chr12 77460003 77460097 -66326358 - MER69 DNA AcHobo -600 1926 1835 383 335 22 16 chr12 77461702 77461887 -66324568 + L1MC/D LINE L1 5539 5724 -2084 389 286 71 34 chr12 77462013 77462282 -66324173 + HAL1 LINE L1 2225 2503 -4 729 295 173 8 chr12 77462339 77462828 -66323627 + L2 LINE L2 2605 3187 -126 252 200 17 0 chr12 77463957 77464017 -66322438 + (TG)n Simple_repeat Simple_repeat 2 62 0 307 345 47 7 chr12 77464435 77464583 -66321872 - MIR SINE MIR -30 232 79 28 86 0 0 chr12 77464758 77464828 -66321627 + AT_rich Low_complexity Low_complexity 1 70 0 199 375 0 0 chr12 77465210 77465282 -66321173 + L2 LINE L2 3192 3263 -50 29 78 0 0 chr12 77466526 77466590 -66319865 + AT_rich Low_complexity Low_complexity 1 64 0 842 208 0 79 chr12 77466591 77466634 -66319821 - MLT2B1 LTR ERVL 0 520 475 261 0 0 0 chr12 77466634 77466663 -66319792 + (TG)n Simple_repeat Simple_repeat 2 30 0 842 208 0 79 chr12 77466663 77466821 -66319634 - MLT2B1 LTR ERVL -45 475 335 325 179 0 0 chr12 77466816 77466872 -66319583 - MLT2B2 LTR ERVL -457 58 3 * 273 380 47 67 chr12 77466950 77467250 -66319205 - L2 LINE L2 -1 3271 2978 1317 226 54 38 chr12 77467382 77467750 -66318705 - MLT1A2 LTR MaLR 0 374 1 2450 207 72 148 chr12 77467758 77468906 -66317549 - MLT1A2-int LTR MaLR -2 1369 189 2328 103 0 0 chr12 77468906 77469216 -66317239 - AluSq SINE Alu -3 310 1 2450 207 72 148 chr12 77469216 77469388 -66317067 - MLT1A2-int LTR MaLR -1182 189 5 1055 283 32 35 chr12 77469392 77469767 -66316688 - MLT1A2 LTR MaLR 0 374 1 238 328 107 55 chr12 77469862 77470152 -66316303 - L2 LINE L2 -385 2929 2625 1989 138 16 3 chr12 77470372 77470676 -66315779 + AluSx SINE Alu 1 308 -4 30 0 0 0 chr12 77470731 77470761 -66315694 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr12 77470807 77470846 -66315609 + AT_rich Low_complexity Low_complexity 1 39 0 196 357 65 50 chr12 77471324 77471523 -66314932 + MIR SINE MIR 15 216 -46 4079 59 2 0 chr12 77472138 77472647 -66313808 - L1PA7 LINE L1 -15 6139 5630 631 270 121 14 chr12 77472655 77472870 -66313585 + MIR SINE MIR 15 252 -10 1653 153 7 16 chr12 77473411 77473718 -66312737 - L1MA3 LINE L1 0 6305 6002 23 33 0 0 chr12 77474035 77474065 -66312390 + AT_rich Low_complexity Low_complexity 1 30 0 372 331 0 51 chr12 77475342 77475499 -66310956 - MIR SINE MIR -49 213 65 192 40 0 0 chr12 77475562 77475587 -66310868 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1948 74 0 0 chr12 77475589 77475831 -66310624 - AluY SINE Alu -29 282 41 990 210 19 4 chr12 77475935 77476176 -66310279 + MER33 DNA MER1_type 1 233 -74 361 281 187 62 chr12 77476477 77476830 -66309625 + MLT1L LTR MaLR 149 545 -70 21 0 0 0 chr12 77477221 77477242 -66309213 + AT_rich Low_complexity Low_complexity 1 21 0 290 123 38 28 chr12 77478001 77478107 -66308348 + (TA)n Simple_repeat Simple_repeat 2 108 0 1760 165 15 21 chr12 77478786 77479114 -66307341 + MER2 DNA MER2_type 20 345 0 2726 169 20 88 chr12 77479348 77479997 -66306458 - MER6A DNA MER2_type 0 605 1 207 387 66 36 chr12 77480188 77480490 -66305965 + L2 LINE L2 2630 2940 -374 25 0 0 0 chr12 77481705 77481730 -66304725 + AT_rich Low_complexity Low_complexity 1 25 0 251 378 10 0 chr12 77481761 77481859 -66304596 + L2 LINE L2 3214 3312 -1 24 32 0 0 chr12 77481965 77481996 -66304459 + AT_rich Low_complexity Low_complexity 1 31 0 1916 122 42 0 chr12 77482374 77482661 -66303794 + AluY SINE Alu 1 299 -12 21 0 0 0 chr12 77482661 77482682 -66303773 + AT_rich Low_complexity Low_complexity 1 21 0 405 312 114 48 chr12 77485264 77485703 -66300752 + HAL1 LINE L1 862 1329 -1178 1970 166 0 0 chr12 77485738 77486040 -66300415 + AluJb SINE Alu 1 302 -10 31 44 0 0 chr12 77486258 77486303 -66300152 + AT_rich Low_complexity Low_complexity 1 45 0 1388 278 129 7 chr12 77486961 77487411 -66299044 - MLT1E2 LTR MaLR -6 620 116 293 61 0 20 chr12 77487411 77487460 -66298995 + (TTTAA)n Simple_repeat Simple_repeat 3 50 0 1725 179 6 10 chr12 77487468 77487780 -66298675 - AluSx SINE Alu 0 312 2 291 259 19 56 chr12 77487780 77487880 -66298575 - MLT1E2 LTR MaLR -510 116 19 553 298 73 19 chr12 77489714 77489919 -66296536 + MIR SINE MIR 3 218 -44 328 313 28 62 chr12 77490276 77490360 -66296095 - MIR SINE MIR -73 189 113 2054 142 0 3 chr12 77490360 77490670 -66295785 + AluSx SINE Alu 1 309 -3 328 313 28 62 chr12 77490670 77490761 -66295694 - MIR SINE MIR -149 113 20 444 191 17 9 chr12 77490947 77491062 -66295393 + CT-rich Low_complexity Low_complexity 2 117 0 2402 72 0 0 chr12 77491086 77491377 -66295078 + AluY SINE Alu 1 291 -20 257 0 30 0 chr12 77491764 77491797 -66294658 + (TA)n Simple_repeat Simple_repeat 2 35 0 436 176 286 0 chr12 77492175 77492266 -66294189 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 77492312 77492344 -66294111 + AT_rich Low_complexity Low_complexity 1 32 0 1175 316 58 27 chr12 77492927 77493474 -66292981 + L1MCb LINE L1 1 564 -5481 646 292 30 30 chr12 77493556 77493861 -66292594 + L1MCb LINE L1 554 858 -5187 * 1790 224 56 47 chr12 77493858 77494232 -66292223 - L1MCb LINE L1 -4851 1194 1188 1972 153 3 0 chr12 77494232 77494539 -66291916 - AluSx SINE Alu -4 308 1 1790 224 56 47 chr12 77494539 77494876 -66291579 - L1MCb LINE L1 -4857 1188 856 243 139 23 0 chr12 77494876 77494919 -66291536 + MSTB2 LTR MaLR 414 457 0 418 307 15 15 chr12 77494935 77495072 -66291383 + L1M4 LINE L1 3995 4131 -2015 * 2420 218 147 14 chr12 77495067 77495796 -66290659 + L1MC3 LINE L1 5734 6559 -1226 4106 202 44 13 chr12 77595796 77596867 -66189588 - L1 LINE L1 -2071 4075 2972 1469 186 45 3 chr12 77596970 77597282 -66189173 + L1P3 LINE L1 179 503 -5372 3186 223 19 52 chr12 77597287 77598669 -66187786 + L1P3 LINE L1 771 2111 -4350 210 247 376 0 chr12 77599597 77599690 -66186765 - MIR SINE MIR -54 208 81 260 239 109 0 chr12 77599930 77600022 -66186433 + L1MA9 LINE L1 6172 6273 -39 1360 192 18 66 chr12 77600108 77600441 -66186014 + MLT1A1 LTR MaLR 1 317 -48 26 30 0 0 chr12 77600521 77600554 -66185901 + AT_rich Low_complexity Low_complexity 1 33 0 314 290 56 51 chr12 77600642 77600856 -66185599 + L2 LINE L2 3083 3297 -16 2153 120 7 0 chr12 77601278 77601579 -66184876 + AluSx SINE Alu 5 307 -5 753 199 0 14 chr12 77602202 77602343 -66184112 - FAM SINE Alu -27 158 20 275 290 177 32 chr12 77602437 77602561 -66183894 - L2 LINE L2 -27 3245 3104 1133 186 19 0 chr12 77603314 77603529 -66182926 + MER58A DNA MER1_type 2 220 -4 203 245 19 0 chr12 77603794 77603847 -66182608 - MIR SINE MIR -72 136 83 1728 147 47 61 chr12 77604192 77604552 -66181903 - THE1B LTR MaLR 0 364 10 735 261 68 0 chr12 77604801 77604939 -66181516 + MLT1A1 LTR MaLR 335 462 -93 564 42 0 0 chr12 77604939 77605010 -66181445 + (AGTAG)n Simple_repeat Simple_repeat 2 72 0 1135 43 0 49 chr12 77605013 77605197 -66181258 + (AATAG)n Simple_repeat Simple_repeat 4 178 0 735 261 68 0 chr12 77605197 77605261 -66181194 + MLT1A1 LTR MaLR 463 555 0 274 354 66 46 chr12 77605468 77605861 -66180594 - MLT1J2 LTR MaLR -13 437 37 306 287 61 9 chr12 77606154 77606269 -66180186 + MIR SINE MIR 49 169 -93 257 356 6 25 chr12 77606367 77606527 -66179928 - MER117 DNA MER1_type -36 161 5 6268 40 26 0 chr12 77606710 77607475 -66178980 + L1PA5 LINE L1 5362 6146 -8 28 29 0 0 chr12 77607475 77607510 -66178945 + AT_rich Low_complexity Low_complexity 1 35 0 232 371 142 20 chr12 77608729 77608982 -66177473 - L3 LINE CR1 -15 1562 1279 584 154 68 17 chr12 77610515 77610632 -66175823 - AluJb SINE Alu -23 289 167 7792 138 29 27 chr12 77611234 77612861 -66173594 + L1M1 LINE L1 2079 3708 -3857 2105 108 10 3 chr12 77613100 77613395 -66173060 - AluSg SINE Alu -13 297 1 293 299 103 0 chr12 77614588 77614695 -66171760 - MIR SINE MIR -54 208 91 204 40 0 0 chr12 77615210 77615235 -66171220 + (CA)n Simple_repeat Simple_repeat 2 26 0 201 341 12 24 chr12 77615777 77615862 -66170593 + L2 LINE L2 3209 3292 -21 611 236 56 15 chr12 77616234 77616429 -66170026 + L1M3 LINE L1 5434 5636 -547 560 169 88 7 chr12 77616437 77616573 -66169882 + MLT1A1 LTR MaLR 2 148 -217 315 0 0 0 chr12 77617060 77617095 -66169360 + (CA)n Simple_repeat Simple_repeat 1 35 0 353 171 0 0 chr12 77617231 77617301 -66169154 + CT-rich Low_complexity Low_complexity 1 70 0 1948 171 3 3 chr12 77617301 77617611 -66168844 - AluJb SINE Alu -2 310 1 189 245 38 0 chr12 77618120 77618173 -66168282 + MIR SINE MIR 195 249 -13 323 155 0 28 chr12 77618229 77618249 -66168206 + (TAA)n Simple_repeat Simple_repeat 3 22 -49 2023 119 0 7 chr12 77618249 77618534 -66167921 + AluSg SINE Alu 1 283 -27 323 155 0 28 chr12 77618534 77618584 -66167871 + (TAA)n Simple_repeat Simple_repeat 22 71 0 848 229 45 5 chr12 77618870 77619071 -66167384 + MER63A DNA MER1_type 1 209 -1 292 285 85 31 chr12 77619208 77619338 -66167117 + MIR SINE MIR 120 256 -6 555 192 60 36 chr12 77620055 77620222 -66166233 + L1MB3 LINE L1 5969 6139 -44 235 304 60 10 chr12 77620334 77620535 -66165920 + L1M4 LINE L1 2219 2429 -3717 1180 262 101 5 chr12 77620601 77621247 -66165208 + L1M1 LINE L1 3952 4659 -2906 487 329 116 17 chr12 77621361 77621662 -66164793 + L1M1 LINE L1 4904 5234 -2331 2480 57 3 0 chr12 77621762 77622076 -66164379 + L1PA7 LINE L1 5839 6153 -1 204 111 0 0 chr12 77622262 77622298 -66164157 + (T)n Simple_repeat Simple_repeat 1 36 0 2483 59 0 0 chr12 77622494 77622801 -66163654 + AluY SINE Alu 1 307 -4 2323 59 3 0 chr12 77623359 77623645 -66162810 + AluY SINE Alu 1 287 -24 1814 186 28 14 chr12 77624610 77624970 -66161485 + MLT1A1 LTR MaLR 1 365 0 2136 172 23 30 chr12 77625014 77625451 -66161004 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr12 77625701 77625723 -66160732 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr12 77625989 77626017 -66160438 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 0 45 chr12 77626238 77626305 -66160150 - L2 LINE L2 -1481 1833 1770 269 290 136 85 chr12 77626315 77626609 -66159846 - L2 LINE L2 -550 2764 2438 2178 129 10 44 chr12 77626609 77626997 -66159458 + THE1C LTR MaLR 1 375 0 269 290 136 85 chr12 77626997 77627150 -66159305 - L2 LINE L2 -876 2438 2294 339 307 133 8 chr12 77627260 77627501 -66158954 - MLT1I LTR MaLR -51 358 88 728 79 0 0 chr12 77628475 77628576 -66157879 - AluSp/q SINE Alu -17 296 196 2426 77 0 7 chr12 77628576 77628886 -66157569 - AluY SINE Alu -3 308 1 379 331 22 34 chr12 77629116 77629294 -66157161 - MIR3 SINE MIR -13 195 20 195 283 0 0 chr12 77629407 77629506 -66156949 + CT-rich Low_complexity Low_complexity 3 101 0 2262 176 28 16 chr12 77629573 77630000 -66156455 - MSTB1 LTR MaLR 0 432 1 1133 200 119 13 chr12 77630611 77630921 -66155534 - MER2 DNA MER2_type -1 343 1 182 307 89 50 chr12 77632503 77632604 -66153851 - L2 LINE L2 -12 3301 3197 896 213 4 88 chr12 77632612 77632851 -66153604 + MER20 DNA MER1_type 1 219 0 414 229 57 9 chr12 77633488 77633593 -66152862 + MIR3 SINE MIR 81 190 -18 349 242 15 106 chr12 77634589 77634683 -66151772 - MER5A DNA MER1_type -49 140 60 2498 59 0 0 chr12 77634683 77634987 -66151468 + AluYa5 SINE Alu 1 304 -7 349 242 15 106 chr12 77634987 77635024 -66151431 - MER5A DNA MER1_type -129 60 21 209 200 22 0 chr12 77635496 77635541 -66150914 + (CA)n Simple_repeat Simple_repeat 1 46 0 354 308 28 47 chr12 77635541 77635755 -66150700 + MIR SINE MIR 53 262 0 216 381 0 0 chr12 77635965 77636049 -66150406 + MIR SINE MIR 2 85 -177 1460 240 20 0 chr12 77636049 77636399 -66150056 + MLT1A1 LTR MaLR 1 357 -8 485 282 11 48 chr12 77636404 77636471 -66149984 + MIR SINE MIR 82 150 -112 2839 19 0 0 chr12 77636471 77636785 -66149670 + AluYb8 SINE Alu 1 314 -4 485 282 11 48 chr12 77636785 77636905 -66149550 + MIR SINE MIR 150 262 0 281 281 73 0 chr12 77637078 77637160 -66149295 - MER81 DNA DNA -1 113 26 312 135 0 0 chr12 77638018 77638070 -66148385 + MADE1 DNA Mariner 2 53 -27 283 164 0 36 chr12 77638329 77638384 -66148071 + MLT1K LTR MaLR 433 485 -103 718 283 116 28 chr12 77638575 77638936 -66147519 - MLT1H LTR MaLR -5 544 152 363 44 0 0 chr12 77640588 77640633 -66145822 + (GA)n Simple_repeat Simple_repeat 1 45 0 2832 197 14 6 chr12 77640862 77641507 -66144948 - L1P LINE L1 -1081 5065 4416 244 353 82 0 chr12 77641630 77641752 -66144703 - MIR SINE MIR -87 175 44 377 297 32 30 chr12 77643086 77643290 -66143165 + MIR SINE MIR 44 249 -13 216 0 0 0 chr12 77643599 77643623 -66142832 + (TAA)n Simple_repeat Simple_repeat 2 25 0 343 265 15 8 chr12 77643730 77643862 -66142593 + (TA)n Simple_repeat Simple_repeat 2 134 0 3730 172 8 13 chr12 77643884 77644587 -66141868 - MER50 LTR ERV1 -34 700 1 257 386 33 11 chr12 77644758 77644942 -66141513 + MIR SINE MIR 75 262 0 1163 282 56 32 chr12 77646862 77647398 -66139057 - MLT1H LTR MaLR 0 549 1 204 67 0 0 chr12 77647782 77647812 -66138643 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 376 265 135 35 chr12 77647882 77648052 -66138403 - MIR3 SINE MIR -19 189 3 219 69 0 0 chr12 77648573 77648602 -66137853 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 280 336 48 0 chr12 77648620 77648724 -66137731 - MIR SINE MIR -60 148 40 214 393 28 9 chr12 77649619 77649726 -66136729 + MIR3 SINE MIR 65 173 -35 267 152 0 0 chr12 77650164 77650210 -66136245 + (CA)n Simple_repeat Simple_repeat 2 47 0 2194 163 53 5 chr12 77650210 77650608 -66135847 - MSTB LTR MaLR -2 424 8 304 192 144 0 chr12 77650692 77650796 -66135659 + MER103 DNA DNA 41 159 -7 641 381 29 0 chr12 77652598 77652876 -66133579 + L2 LINE L2 2624 2909 -405 424 271 17 97 chr12 77652911 77653210 -66133245 - L2 LINE L2 0 3313 3039 * 669 309 87 22 chr12 77653203 77653559 -66132896 + L2 LINE L2 2917 3295 -18 652 101 10 100 chr12 77653635 77653794 -66132661 - THE1A LTR MaLR 0 355 211 323 272 148 19 chr12 77653983 77654145 -66132310 + MIR SINE MIR 9 191 -71 306 50 0 0 chr12 77654186 77654226 -66132229 + (TG)n Simple_repeat Simple_repeat 2 41 0 3136 190 19 20 chr12 77654227 77655377 -66131078 - L1M2 LINE L1 -563 5749 4590 852 160 120 73 chr12 77655367 77655638 -66130817 + L1MA9 LINE L1 5844 6101 -211 * 261 0 0 0 chr12 77655638 77655667 -66130788 + (CA)n Simple_repeat Simple_repeat 2 30 0 852 160 120 73 chr12 77655667 77655733 -66130722 + L1MA9 LINE L1 6101 6162 -150 1850 152 19 19 chr12 77655733 77656042 -66130413 + AluJb SINE Alu 1 309 -3 852 160 120 73 chr12 77656042 77656140 -66130315 + L1MA9 LINE L1 6162 6312 0 203 244 0 0 chr12 77656265 77656306 -66130149 + L2 LINE L2 3216 3256 -16 334 323 31 8 chr12 77657551 77657678 -66128777 - MIR SINE MIR -114 148 19 269 288 137 35 chr12 77657705 77657931 -66128524 + MIR SINE MIR 8 256 -6 212 336 47 28 chr12 77658021 77658128 -66128327 + L2 LINE L2 3164 3272 0 265 350 108 10 chr12 77659057 77659251 -66127204 + MIR SINE MIR 39 251 -11 436 239 63 28 chr12 77659506 77659648 -66126807 + MIR SINE MIR 59 205 -57 1252 132 9 14 chr12 77659763 77659975 -66126480 + L1PA8 LINE L1 5957 6167 -5 485 299 62 47 chr12 77659985 77660453 -66126002 + L1M4 LINE L1 3846 4320 -1826 2149 110 25 0 chr12 77660457 77660784 -66125671 - L1PA13 LINE L1 -4 6159 5825 1160 181 73 5 chr12 77660784 77661126 -66125329 - L1PA13 LINE L1 -734 5434 5064 3144 170 49 2 chr12 77661140 77661439 -66125016 + L1P LINE L1 4379 4662 -1484 221 0 35 0 chr12 77661439 77661468 -66124987 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3144 170 49 2 chr12 77661468 77661802 -66124653 + L1P LINE L1 4662 5042 -1104 2217 91 0 7 chr12 77661804 77662090 -66124365 - AluSc SINE Alu -10 299 16 246 284 77 14 chr12 77662096 77662318 -66124137 + L1M4 LINE L1 4327 4562 -1584 1121 253 103 56 chr12 77662327 77663019 -66123436 + L1ME LINE L1 4457 5196 -950 2669 120 12 0 chr12 77663019 77663428 -66123027 - L1PA13 LINE L1 -19 6144 5731 1121 253 103 56 chr12 77663428 77663568 -66122887 + L1ME LINE L1 5196 5328 -818 1050 261 41 3 chr12 77663612 77663926 -66122529 + L1ME LINE L1 5431 5756 -408 22 35 0 0 chr12 77664231 77664260 -66122195 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 77664647 77664672 -66121783 + AT_rich Low_complexity Low_complexity 1 25 0 4461 115 17 29 chr12 77664672 77665443 -66121012 - L1PB2 LINE L1 -3 6148 5387 2263 114 8 22 chr12 77665772 77666132 -66120323 + THE1A LTR MaLR 1 355 0 7444 157 17 24 chr12 77667331 77669864 -66116591 - L1MA1 LINE L1 -90 6212 3688 309 315 18 0 chr12 77670375 77670486 -66115969 - L1ME3A LINE L1 -53 6117 6005 439 108 36 12 chr12 77670536 77670619 -66115836 - Alu SINE Alu -3 307 223 189 0 0 0 chr12 77670623 77670644 -66115811 + (T)n Simple_repeat Simple_repeat 1 21 0 39 38 0 0 chr12 77670880 77670933 -66115522 + GC_rich Low_complexity Low_complexity 1 53 0 27863 88 15 5 chr12 77671088 77671243 -66115212 - HERVL LTR ERVL -904 4750 4598 2048 119 0 53 chr12 77671243 77671587 -66114868 + AluSx SINE Alu 1 312 0 27863 88 15 5 chr12 77671587 77675364 -66111091 - HERVL LTR ERVL -1056 4598 780 520 217 40 33 chr12 77675372 77675524 -66110931 - L1MDa LINE L1 -6369 171 19 1817 133 41 0 chr12 77675561 77675853 -66110602 + AluSg SINE Alu 1 303 0 300 350 74 11 chr12 77676022 77676305 -66110150 - Charlie7 DNA MER1_type -2309 303 3 272 250 59 0 chr12 77676726 77676794 -66109661 + MIR SINE MIR 76 147 -61 36 40 0 0 chr12 77677416 77677466 -66108989 + AT_rich Low_complexity Low_complexity 1 50 0 1994 140 0 7 chr12 77678563 77678855 -66107600 + AluSx SINE Alu 1 290 -22 18074 88 8 8 chr12 77679261 77681819 -66104636 - HERVL LTR ERVL -892 4762 2205 471 48 0 0 chr12 77681805 77681868 -66104587 + HERVL LTR ERVL 2541 2603 -3051 * 1373 80 0 80 chr12 77681876 77682100 -66104355 - HERVL LTR ERVL -3447 2207 2002 927 202 147 34 chr12 77682214 77682559 -66103896 - LTR2B LTR ERV1 -90 390 1 14232 96 5 0 chr12 77682559 77684610 -66101845 - Harlequin LTR ERV1 0 6896 4836 329 204 0 10 chr12 77686214 77686312 -66100143 + (TA)n Simple_repeat Simple_repeat 1 97 0 22 56 0 0 chr12 77686794 77686830 -66099625 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr12 77687140 77687171 -66099284 + AT_rich Low_complexity Low_complexity 1 31 0 4930 104 106 33 chr12 77687862 77688948 -66097507 - MER11A LTR ERVK -2 1264 1 423 171 26 122 chr12 77689867 77690085 -66096370 + MLT1B LTR MaLR 1 174 -191 230 79 0 26 chr12 77690087 77690125 -66096330 + (TC)n Simple_repeat Simple_repeat 2 38 0 763 233 52 0 chr12 77690141 77690334 -66096121 + MLT1B LTR MaLR 188 390 0 204 97 0 0 chr12 77690349 77690380 -66096075 + (CAATT)n Simple_repeat Simple_repeat 3 33 0 1673 298 145 31 chr12 77690380 77691276 -66095179 - L2 LINE L2 -17 3296 2503 2269 125 19 19 chr12 77691276 77691651 -66094804 - THE1C LTR MaLR 0 375 1 9579 128 52 7 chr12 77691652 77693164 -66093291 - THE1C-int LTR MaLR -1 1579 1 2340 129 16 11 chr12 77693164 77693537 -66092918 - THE1C LTR MaLR 0 375 1 1673 298 145 31 chr12 77693537 77693975 -66092480 - L2 LINE L2 -809 2504 1805 22 35 0 0 chr12 77694768 77694797 -66091658 + AT_rich Low_complexity Low_complexity 1 29 0 419 344 0 16 chr12 77695453 77695636 -66090819 + G-rich Low_complexity Low_complexity 1 180 0 49 34 0 34 chr12 77697825 77697914 -66088541 + AT_rich Low_complexity Low_complexity 1 86 0 3546 241 61 47 chr12 77698856 77700988 -66085467 + L1M2a LINE L1 1982 3879 -3686 1907 146 7 0 chr12 77700988 77701282 -66085173 - AluSx SINE Alu -16 296 1 3546 241 61 47 chr12 77701282 77702097 -66084358 + L1M2a LINE L1 3879 4681 -2884 602 155 17 0 chr12 77702108 77702224 -66084231 + L1M2a LINE L1 5664 5781 -1784 * 1294 129 18 5 chr12 77702220 77702444 -66084011 + L1MA8 LINE L1 6028 6254 -37 1775 183 6 6 chr12 77703095 77703407 -66083048 - AluSx SINE Alu 0 312 1 27 0 0 0 chr12 77703417 77703444 -66083011 + AT_rich Low_complexity Low_complexity 1 27 0 240 86 0 0 chr12 77703475 77703510 -66082945 + (TA)n Simple_repeat Simple_repeat 1 35 0 2137 105 3 3 chr12 77703786 77704082 -66082373 + AluSq SINE Alu 5 300 -13 28 29 0 0 chr12 77704376 77704411 -66082044 + AT_rich Low_complexity Low_complexity 1 35 0 2774 157 50 10 chr12 77704469 77704971 -66081484 + L1PA16 LINE L1 5637 6158 -8 43 0 0 0 chr12 77705096 77705139 -66081316 + AT_rich Low_complexity Low_complexity 1 43 0 374 395 38 5 chr12 77705364 77705574 -66080881 - MIR SINE MIR -25 237 21 3825 108 33 5 chr12 77707833 77708415 -66078040 - L1PA10 LINE L1 0 6168 5571 830 155 1 7 chr12 77708415 77708574 -66077881 + L1P4 LINE L1 5450 5606 -578 855 240 103 115 chr12 77709286 77710441 -66076014 + L1MC5 LINE L1 6414 7537 -424 310 289 92 50 chr12 77710613 77710852 -66075603 - L1ME4a LINE L1 -178 5943 5695 27 49 0 0 chr12 77711068 77711109 -66075346 + AT_rich Low_complexity Low_complexity 1 41 0 39 0 0 0 chr12 77711524 77711563 -66074892 + AT_rich Low_complexity Low_complexity 1 39 0 821 339 93 23 chr12 77711765 77712237 -66074218 + L2 LINE L2 2808 3312 -1 318 164 60 0 chr12 77712610 77712677 -66073778 + LTR41 LTR ERVL 700 770 -3 475 263 44 40 chr12 77712682 77712933 -66073522 + L1M4 LINE L1 4377 4628 -1518 273 246 29 120 chr12 77712937 77713246 -66073209 - L1M4 LINE L1 -2751 3395 3115 * 868 280 11 4 chr12 77713243 77713511 -66072944 - L1ME4a LINE L1 -1314 4832 4563 2022 113 20 87 chr12 77713512 77713902 -66072553 - THE1B LTR MaLR 0 364 1 1295 75 5 11 chr12 77713902 77714089 -66072366 - THE1B-int LTR MaLR 0 1580 1395 1784 239 67 28 chr12 77714190 77714501 -66071954 + L1ME3 LINE L1 1335 1632 -4924 2486 211 36 36 chr12 77714501 77715055 -66071400 + MLT2B3 LTR ERVL 1 554 0 1784 239 67 28 chr12 77715055 77715818 -66070637 + L1ME3 LINE L1 1632 6224 -332 591 292 50 11 chr12 77715878 77716138 -66070317 + L1ME3 LINE L1 6192 6461 -95 967 185 17 6 chr12 77716243 77716421 -66070034 + AluJb SINE Alu 120 299 -13 31 0 0 0 chr12 77716884 77716915 -66069540 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 77718141 77718163 -66068292 + AT_rich Low_complexity Low_complexity 1 22 0 252 281 123 0 chr12 77718354 77718500 -66067955 + MER103 DNA DNA 3 166 0 22 0 0 0 chr12 77720591 77720613 -66065842 + AT_rich Low_complexity Low_complexity 1 22 0 620 182 0 0 chr12 77721215 77721325 -66065130 + FRAM SINE Alu 1 110 -66 583 311 53 10 chr12 77721549 77721758 -66064697 - MIR SINE MIR -14 248 31 379 307 78 90 chr12 77722159 77722592 -66063863 - L2 LINE L2 -2 3311 2884 410 254 143 8 chr12 77722607 77722733 -66063722 - MER45 DNA AcHobo -897 143 1 819 264 19 14 chr12 77722772 77722988 -66063467 - L2 LINE L2 -468 2846 2630 1919 116 7 0 chr12 77724566 77724842 -66061613 + AluSg SINE Alu 20 297 -13 2757 68 0 0 chr12 77725018 77725372 -66061083 + L1PA8 LINE L1 5814 6167 -5 25 31 0 0 chr12 77725467 77725499 -66060956 + AT_rich Low_complexity Low_complexity 1 32 0 237 324 73 45 chr12 77725809 77725988 -66060467 + HAL1b LINE L1 339 522 -826 343 277 109 4 chr12 77726048 77726286 -66060169 + Charlie2 DNA MER1_type 2556 2818 -44 2138 59 0 11 chr12 77726934 77727204 -66059251 - AluY SINE Alu -4 307 41 22 70 0 0 chr12 77727662 77727705 -66058750 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr12 77729194 77729231 -66057224 + AT_rich Low_complexity Low_complexity 1 37 0 481 270 57 40 chr12 77729649 77729678 -66056777 + L1MEc LINE L1 1791 1818 -4578 2174 108 65 3 chr12 77729678 77730031 -66056424 - THE1C LTR MaLR 0 375 1 481 270 57 40 chr12 77730031 77730297 -66056158 + L1MEc LINE L1 1818 2091 -4305 661 254 6 23 chr12 77730408 77730585 -66055870 + AluJo SINE Alu 1 174 -138 445 245 10 0 chr12 77730593 77730695 -66055760 - L1M4 LINE L1 -2299 3847 3745 297 157 41 8 chr12 77730771 77730892 -66055563 + (TA)n Simple_repeat Simple_repeat 2 126 0 308 169 45 39 chr12 77730905 77731059 -66055396 + (TA)n Simple_repeat Simple_repeat 1 155 0 774 196 7 0 chr12 77731060 77731198 -66055257 - AluJb SINE Alu -22 290 152 1614 258 57 23 chr12 77731266 77731968 -66054487 - L1M4 LINE L1 -2437 3709 2984 918 272 110 52 chr12 77731967 77732882 -66053573 + L1ME LINE L1 4788 5761 -403 * 242 271 0 17 chr12 77732874 77732933 -66053522 + L1MC4 LINE L1 6491 6548 -1494 * 1027 264 71 30 chr12 77732941 77733335 -66053120 + L1MC4 LINE L1 6755 7164 -878 1193 262 62 67 chr12 77733400 77733964 -66052491 + L1MCb LINE L1 5 565 -5480 4829 138 6 39 chr12 77733981 77734836 -66051619 + L1PA16 LINE L1 5340 6166 0 1496 221 155 79 chr12 77734940 77736031 -66050424 + L1MCb LINE L1 558 1744 -4820 239 286 57 9 chr12 77736054 77736159 -66050296 + L1MC4 LINE L1 7927 8036 -6 22 0 0 0 chr12 77737370 77737392 -66049063 + AT_rich Low_complexity Low_complexity 1 22 0 197 309 0 0 chr12 77737455 77737497 -66048958 + L2 LINE L2 3193 3234 -38 3625 168 18 2 chr12 77738102 77738965 -66047490 + L1P4 LINE L1 4615 5489 -677 1688 110 49 4 chr12 77739067 77739313 -66047142 - AluSq SINE Alu -54 259 3 632 291 61 12 chr12 77739316 77739816 -66046639 - L1ME3 LINE L1 -190 5980 5301 241 218 0 18 chr12 77739818 77739873 -66046582 + (TA)n Simple_repeat Simple_repeat 2 55 0 262 271 28 9 chr12 77739893 77740000 -66046455 - L1ME3 LINE L1 -2199 3947 3839 255 157 0 0 chr12 77740094 77740145 -66046310 + (TG)n Simple_repeat Simple_repeat 2 52 0 1234 304 86 16 chr12 77740195 77741411 -66045044 - L1ME3 LINE L1 -2735 3411 2111 23 0 0 0 chr12 77741412 77741435 -66045020 + AT_rich Low_complexity Low_complexity 1 23 0 1048 241 136 87 chr12 77741824 77742259 -66044196 + MLT2B1 LTR ERVL 1 456 -64 2683 148 36 6 chr12 77742306 77742780 -66043675 - HSMAR2 DNA Mariner -1 1301 814 294 285 42 67 chr12 77742801 77742966 -66043489 - LTR16A1 LTR ERVL -90 367 207 5123 134 10 28 chr12 77742975 77743806 -66042649 - HSMAR2 DNA Mariner -486 816 1 293 125 0 0 chr12 77743924 77743972 -66042483 + MLT2B2 LTR ERVL 473 515 0 344 356 7 7 chr12 77744277 77744412 -66042043 + HERV16 LTR ERVL 495 629 -4367 1192 82 0 60 chr12 77745738 77745920 -66040535 - AluSq SINE Alu -142 171 1 366 192 0 0 chr12 77746272 77746345 -66040110 - L1P4 LINE L1 -457 5709 5637 28 29 0 0 chr12 77746652 77746687 -66039768 + AT_rich Low_complexity Low_complexity 1 35 0 351 105 0 0 chr12 77747136 77747193 -66039262 + (TG)n Simple_repeat Simple_repeat 1 57 0 186 103 0 0 chr12 77747501 77747530 -66038925 + (TTTTTA)n Simple_repeat Simple_repeat 3 31 0 4120 140 17 31 chr12 77747533 77748278 -66038177 - L1PA16 LINE L1 -2 6164 5430 1215 101 0 0 chr12 77748323 77748491 -66037964 - L1PB1 LINE L1 -7 6144 5977 9023 204 12 6 chr12 77748491 77750632 -66035823 - L1PA16 LINE L1 -729 5437 3284 181 57 57 0 chr12 77750752 77750787 -66035668 + (TA)n Simple_repeat Simple_repeat 1 37 0 2352 93 0 0 chr12 77750853 77751153 -66035302 + AluSc SINE Alu 1 300 -9 21 36 0 0 chr12 77751414 77751442 -66035013 + AT_rich Low_complexity Low_complexity 1 28 0 231 297 27 14 chr12 77751466 77751540 -66034915 + MIR SINE MIR 155 229 -33 180 200 0 0 chr12 77751558 77751608 -66034847 + (TTA)n Simple_repeat Simple_repeat 3 52 0 807 124 78 0 chr12 77751757 77751886 -66034569 - MER85 DNA T2_type 0 139 1 2039 120 37 3 chr12 77754050 77754350 -66032105 - AluSx SINE Alu -2 310 1 1750 143 24 7 chr12 77754420 77754713 -66031742 - AluSx SINE Alu -4 308 11 22 0 0 0 chr12 77756608 77756630 -66029825 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 77757295 77757317 -66029138 + AT_rich Low_complexity Low_complexity 1 22 0 371 89 38 13 chr12 77757329 77757408 -66029047 + (TA)n Simple_repeat Simple_repeat 2 82 0 189 0 0 0 chr12 77757651 77757672 -66028783 + (CA)n Simple_repeat Simple_repeat 2 22 0 300 276 0 0 chr12 77757677 77757764 -66028691 - L1MC4 LINE L1 -1342 6700 6614 192 152 0 0 chr12 77757764 77757797 -66028658 + (TA)n Simple_repeat Simple_repeat 2 34 0 3799 277 38 15 chr12 77758009 77759084 -66027371 + L1MDa LINE L1 224 1323 -5217 856 188 5 27 chr12 77759189 77759375 -66027080 + LTR2B LTR ERV1 309 490 0 13314 191 8 13 chr12 77759377 77761834 -66024621 + HERVE LTR ERV1 2 2445 -5368 1787 179 13 0 chr12 77761934 77762241 -66024214 + MLT1A1-int LTR MaLR 1424 1734 -1 1435 195 41 47 chr12 77762244 77762608 -66023847 + MLT1A1 LTR MaLR 4 365 0 234 303 45 0 chr12 77763418 77763507 -66022948 - L2 LINE L2 0 3313 3221 181 286 71 14 chr12 77764580 77764650 -66021805 - L3b LINE CR1 -309 1274 1201 21 0 0 0 chr12 77764848 77764869 -66021586 + AT_rich Low_complexity Low_complexity 1 21 0 2102 43 0 0 chr12 77764957 77765212 -66021243 - MER11D LTR ERVK 0 897 643 5674 143 14 20 chr12 77765324 77766398 -66020057 + L1PA16 LINE L1 5102 6166 0 234 295 101 0 chr12 77766398 77766537 -66019918 - L1M2 LINE L1 -845 5446 5294 28 61 0 0 chr12 77766593 77766642 -66019813 + AT_rich Low_complexity Low_complexity 1 49 0 1790 158 6 16 chr12 77766987 77767298 -66019157 + AluJb SINE Alu 1 308 -4 2020 129 19 13 chr12 77768503 77768812 -66017643 - AluSx SINE Alu -1 311 1 40 37 0 0 chr12 77768946 77769000 -66017455 + AT_rich Low_complexity Low_complexity 1 54 0 485 313 132 51 chr12 77769001 77769708 -66016747 - L1MDa LINE L1 -904 1997 1141 1654 196 31 39 chr12 77770180 77770689 -66015766 - MLT2A2 LTR ERVL 0 554 49 7472 32 0 0 chr12 77770689 77771835 -66014620 + L1PA4 LINE L1 5008 6152 -3 260 50 100 0 chr12 77771914 77771954 -66014501 - MLT2A2 LTR ERVL -400 44 1 1660 203 66 37 chr12 77772188 77772346 -66014109 - L1MCa LINE L1 -3457 2969 2817 2017 108 3 39 chr12 77772346 77772653 -66013802 - AluSx SINE Alu -16 296 1 1660 203 66 37 chr12 77772653 77773351 -66013104 - L1MCa LINE L1 -3609 2817 2090 1086 197 126 8 chr12 77773339 77773578 -66012877 - L1MCa LINE L1 -6159 267 1 * 197 316 0 0 chr12 77773601 77773658 -66012797 - L2 LINE L2 0 3313 3257 23 33 0 0 chr12 77774269 77774299 -66012156 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 77775439 77775463 -66010992 + AT_rich Low_complexity Low_complexity 1 24 0 245 327 73 18 chr12 77775770 77775880 -66010575 - L2 LINE L2 -2 3270 3155 864 196 0 0 chr12 77777112 77777260 -66009195 + FRAM SINE Alu 1 147 -29 322 335 54 18 chr12 77777674 77777841 -66008614 - MER5A DNA MER1_type -2 187 15 1729 202 22 14 chr12 77779780 77780142 -66006313 - MLT1A1 LTR MaLR 0 365 1 36 77 0 0 chr12 77781720 77781798 -66004657 + AT_rich Low_complexity Low_complexity 1 78 0 735 274 97 49 chr12 77781894 77782304 -66004151 + L1MCa LINE L1 1 283 -5762 2284 235 60 56 chr12 77782312 77783663 -66002792 + L1MCa LINE L1 723 2294 -4451 425 241 66 0 chr12 77783726 77783892 -66002563 + L1MCa LINE L1 2425 2601 -3963 9536 212 59 37 chr12 77783958 77784954 -66001501 + L1M4 LINE L1 12 984 -6581 228 35 0 0 chr12 77784954 77784983 -66001472 + (TC)n Simple_repeat Simple_repeat 2 30 0 9536 212 59 37 chr12 77784983 77786028 -66000427 + L1M4 LINE L1 984 1847 -5718 210 37 0 0 chr12 77786028 77786055 -66000400 + (GA)n Simple_repeat Simple_repeat 2 28 0 9536 212 59 37 chr12 77786055 77787103 -65999352 + L1M4 LINE L1 1847 2870 -4695 5419 79 3 1 chr12 77787103 77787812 -65998643 + HERVL-A2 LTR ERVL 4945 5654 0 2990 104 39 7 chr12 77787812 77788243 -65998212 + MLT2A2 LTR ERVL 1 445 -8 4321 205 27 23 chr12 77788249 77789224 -65997231 - L1P LINE L1 -1731 4415 3437 32 43 0 0 chr12 77789377 77789423 -65997032 + AT_rich Low_complexity Low_complexity 1 46 0 8722 103 18 25 chr12 77790045 77790628 -65995827 + HSMAR1 DNA Mariner 1 587 -700 2041 111 10 3 chr12 77790628 77790917 -65995538 - AluSx SINE Alu -19 293 3 8722 103 18 25 chr12 77790917 77791629 -65994826 + HSMAR1 DNA Mariner 587 1287 0 32 43 0 0 chr12 77791714 77791760 -65994695 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 77792199 77792221 -65994234 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 77792744 77792765 -65993690 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 77793688 77793711 -65992744 + AT_rich Low_complexity Low_complexity 1 23 0 605 273 29 37 chr12 77794413 77794655 -65991800 + L1MCb LINE L1 1 240 -5805 * 1858 258 56 38 chr12 77794654 77795421 -65991034 + L1M4 LINE L1 4792 5572 -1993 2032 259 157 8 chr12 77795442 77795706 -65990749 + L1MC3 LINE L1 6570 6793 -992 222 37 0 0 chr12 77795706 77795733 -65990722 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2032 259 157 8 chr12 77795733 77795963 -65990492 + L1MC3 LINE L1 6793 6987 -798 2386 63 0 35 chr12 77795963 77796279 -65990176 - AluY SINE Alu -6 305 1 2032 259 157 8 chr12 77796279 77796540 -65989915 + L1MC3 LINE L1 6987 7439 -346 21 0 0 0 chr12 77797223 77797244 -65989211 + AT_rich Low_complexity Low_complexity 1 21 0 688 277 14 74 chr12 77797309 77797594 -65988861 + MER90 LTR ERV1 48 315 -260 3259 140 27 11 chr12 77797696 77798260 -65988195 + L1MA7 LINE L1 5707 6279 -12 259 322 52 52 chr12 77799447 77799658 -65986797 - L2 LINE L2 -52 3261 3051 1561 179 16 42 chr12 77799880 77800192 -65986263 + AluJo SINE Alu 3 306 -6 1194 245 121 6 chr12 77800238 77800561 -65985894 + MLT2B1 LTR ERVL 111 470 -50 207 242 0 0 chr12 77800574 77800673 -65985782 + (TA)n Simple_repeat Simple_repeat 2 100 0 479 206 6 0 chr12 77800778 77800953 -65985502 + (TA)n Simple_repeat Simple_repeat 2 177 0 21 0 0 0 chr12 77801287 77801308 -65985147 + AT_rich Low_complexity Low_complexity 1 21 0 730 348 103 59 chr12 77801341 77802445 -65984010 + L1MCb LINE L1 499 1651 -4903 280 300 40 33 chr12 77802475 77802625 -65983830 - LTR40b LTR ERVL -40 422 272 311 316 19 51 chr12 77802918 77803076 -65983379 + L1MCb LINE L1 1846 1998 -4747 428 256 0 0 chr12 77803084 77803215 -65983240 + FLAM_A SINE Alu 26 156 0 2395 275 34 12 chr12 77803691 77804726 -65981729 + L1MCb LINE L1 2283 3340 -3224 * 3463 167 14 8 chr12 77804711 77805350 -65981105 - L1 LINE L1 -1938 4208 3566 7531 32 0 0 chr12 77805364 77806476 -65979979 - L1PA3 LINE L1 -3 6152 5040 7948 27 2 0 chr12 77806476 77807424 -65979031 + L1PA3 LINE L1 4068 5017 -1129 582 140 47 9 chr12 77807419 77807526 -65978929 - L1 LINE L1 -2567 3579 3469 * 6316 227 37 21 chr12 77807527 77809325 -65977130 + L1MCb LINE L1 3338 5164 -1400 1808 242 8 13 chr12 77809456 77809849 -65976606 + MER54A LTR ERVL 468 858 -43 207 69 0 0 chr12 77810750 77810779 -65975676 + (TC)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 77811012 77811036 -65975419 + AT_rich Low_complexity Low_complexity 1 24 0 413 333 93 19 chr12 77812671 77812887 -65973568 + MIR SINE MIR 31 262 0 21 36 0 0 chr12 77813278 77813306 -65973149 + AT_rich Low_complexity Low_complexity 1 28 0 230 301 113 35 chr12 77814466 77814811 -65971644 + L1M4 LINE L1 3546 3917 -2229 30 45 0 0 chr12 77814991 77815035 -65971420 + AT_rich Low_complexity Low_complexity 1 44 0 378 156 83 73 chr12 77815058 77815154 -65971301 - MER3 DNA MER1_type -81 128 32 261 0 0 0 chr12 77815175 77815204 -65971251 + (TA)n Simple_repeat Simple_repeat 1 29 0 2154 58 0 0 chr12 77815204 77815462 -65970993 - AluY SINE Alu -48 263 6 1878 128 77 14 chr12 77815804 77816157 -65970298 - THE1C LTR MaLR 0 375 1 222 78 39 20 chr12 77818044 77818095 -65968360 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr12 77818674 77818703 -65967752 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr12 77819974 77820013 -65966442 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 77820167 77820196 -65966259 + AT_rich Low_complexity Low_complexity 1 29 0 585 88 0 0 chr12 77820789 77820869 -65965586 + MADE1 DNA Mariner 1 80 0 4519 158 31 28 chr12 77821299 77822181 -65964274 - L1MA6 LINE L1 0 6300 5417 2682 143 28 39 chr12 77822186 77822784 -65963671 + L1MA6 LINE L1 4833 5432 -743 530 115 0 0 chr12 77823260 77823338 -65963117 + MADE1 DNA Mariner 3 80 0 25 51 0 0 chr12 77823365 77823404 -65963051 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr12 77824345 77824372 -65962083 + AT_rich Low_complexity Low_complexity 1 27 0 1673 112 104 4 chr12 77824398 77824658 -65961797 - AluSg SINE Alu -24 286 1 1108 83 47 36 chr12 77824992 77825185 -65961270 + L1MA8 LINE L1 6084 6278 -13 1527 105 5 0 chr12 77825199 77825408 -65961047 - AluSg/x SINE Alu -20 292 83 441 0 0 0 chr12 77825563 77825612 -65960843 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 303 368 44 7 chr12 77825621 77825757 -65960698 - L1MEd LINE L1 -5433 686 546 1981 112 3 16 chr12 77825804 77826107 -65960348 - AluSx SINE Alu -13 299 1 24 67 0 0 chr12 77827341 77827386 -65959069 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 77827441 77827462 -65958993 + AT_rich Low_complexity Low_complexity 1 21 0 3147 162 22 72 chr12 77828680 77829407 -65957048 - LTR8 LTR ERV1 0 691 1 697 280 127 49 chr12 77829572 77830022 -65956433 - MLT1J LTR MaLR 0 511 27 2532 120 32 5 chr12 77830113 77830551 -65955904 + PABL_A-int LTR ERV1 3143 3565 -1450 1404 80 5 52 chr12 77830552 77830692 -65955763 + MER41A LTR ERV1 250 378 -176 2236 107 0 13 chr12 77830692 77831002 -65955453 + AluSx SINE Alu 1 306 -6 1404 80 5 52 chr12 77831002 77831074 -65955381 + MER41A LTR ERV1 378 452 -102 3971 208 27 19 chr12 77831372 77832486 -65953969 + L1MB1 LINE L1 5039 6166 -2 859 305 48 41 chr12 77832495 77832969 -65953486 + L1ME3A LINE L1 5476 5962 -208 4338 220 27 38 chr12 77833366 77834623 -65951832 + L1MA7 LINE L1 3988 5214 -1077 1914 181 32 43 chr12 77834623 77835060 -65951395 + Tigger2a DNA MER2_type 3 434 0 4338 220 27 38 chr12 77835060 77835869 -65950586 + L1MA7 LINE L1 5214 6030 -261 313 232 130 51 chr12 77836508 77836646 -65949809 - MLT1J LTR MaLR -312 199 51 423 0 0 0 chr12 77836857 77836904 -65949551 + (CA)n Simple_repeat Simple_repeat 2 48 0 2099 158 111 5 chr12 77836945 77837332 -65949123 - MSTA LTR MaLR 0 428 1 2326 67 3 17 chr12 77837390 77837689 -65948766 + AluY SINE Alu 1 295 -16 384 233 159 13 chr12 77837913 77838145 -65948310 - Charlie7 DNA MER1_type -5 2607 2342 327 272 37 25 chr12 77838124 77838286 -65948169 - Charlie7 DNA MER1_type -1864 748 585 * 29 0 0 0 chr12 77838904 77838933 -65947522 + AT_rich Low_complexity Low_complexity 1 29 0 364 291 95 11 chr12 77838966 77839155 -65947300 - Charlie7 DNA MER1_type -2338 274 70 2148 97 0 3 chr12 77839336 77839625 -65946830 - AluY SINE Alu -23 288 1 28 0 0 0 chr12 77841554 77841582 -65944873 + AT_rich Low_complexity Low_complexity 1 28 0 4573 212 102 107 chr12 77842026 77843129 -65943326 - Cheshire DNA MER1_type -330 2090 983 609 224 0 27 chr12 77843129 77843276 -65943179 - FLAM_C SINE Alu 0 143 1 4573 212 102 107 chr12 77843276 77843474 -65942981 - Cheshire DNA MER1_type -1437 983 786 854 102 8 0 chr12 77843474 77843602 -65942853 - L1PB3 LINE L1 -2 6152 6024 4573 212 102 107 chr12 77843602 77844203 -65942252 - Cheshire DNA MER1_type -1634 786 51 312 268 101 45 chr12 77844223 77844402 -65942053 + L1ME LINE L1 5452 5640 -530 3144 79 7 0 chr12 77845056 77845476 -65940979 + L1PA7 LINE L1 5732 6154 0 180 0 0 0 chr12 77846116 77846136 -65940319 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 213 175 0 0 chr12 77846698 77846738 -65939717 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 77847017 77847038 -65939417 + AT_rich Low_complexity Low_complexity 1 21 0 22983 158 18 32 chr12 77847062 77852606 -65933849 - L1PA10 LINE L1 0 7606 1371 20192 96 15 4 chr12 77852606 77855365 -65931090 - HERVL LTR ERVL -1361 4293 1503 24 0 0 0 chr12 77855812 77855836 -65930619 + AT_rich Low_complexity Low_complexity 1 24 0 713 164 0 8 chr12 77855988 77856110 -65930345 - L1PA15 LINE L1 -5 6160 6040 311 297 0 11 chr12 77856241 77856332 -65930123 + GA-rich Low_complexity Low_complexity 2 91 0 24336 47 2 2 chr12 77857081 77860911 -65925544 - L1PA5 LINE L1 -6 6148 2317 451 326 33 22 chr12 77861273 77861457 -65924998 + MIR SINE MIR 2 187 -75 318 289 115 10 chr12 77861875 77861979 -65924476 + MIR SINE MIR 34 148 -60 186 43 0 0 chr12 77862412 77862435 -65924020 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2477 71 12 3 chr12 77865591 77866603 -65919852 - L1PA7 LINE L1 0 6154 5027 1134 194 30 34 chr12 77866627 77866890 -65919565 + MLT2D LTR ERVL 1 262 -152 199 0 65 0 chr12 77868271 77868302 -65918153 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 22 94 0 0 chr12 77869320 77869384 -65917071 + AT_rich Low_complexity Low_complexity 1 64 0 846 277 86 9 chr12 77869495 77869820 -65916635 - L1ME LINE L1 -449 5721 5372 231 314 0 0 chr12 77869845 77869931 -65916524 - L1MEd LINE L1 -5980 139 54 522 267 30 0 chr12 77869968 77870099 -65916356 - MER5B DNA MER1_type -43 135 1 22 35 0 0 chr12 77871167 77871196 -65915259 + AT_rich Low_complexity Low_complexity 1 29 0 1461 233 36 49 chr12 77871277 77871745 -65914710 - L1MC4a LINE L1 -5 7803 7342 571 121 26 0 chr12 77872230 77872346 -65914109 + CT-rich Low_complexity Low_complexity 3 121 0 1667 165 0 4 chr12 77872348 77872603 -65913852 - AluSx SINE Alu -58 254 1 3507 244 109 14 chr12 77872649 77873701 -65912754 - L1MDa LINE L1 -5080 1460 309 2057 140 47 0 chr12 77873710 77874032 -65912423 - MLT2A2 LTR ERVL 0 453 117 12411 84 3 11 chr12 77874132 77875780 -65910675 + HERVL LTR ERVL 573 2207 -3447 886 62 0 0 chr12 77875881 77875994 -65910461 - THE1A-int LTR MaLR -1467 113 1 2059 102 0 1 chr12 77875994 77876306 -65910149 - THE1A LTR MaLR 0 355 1 705 235 13 7 chr12 77876947 77877096 -65909359 + MLT1A1 LTR MaLR 1 150 -215 204 254 32 48 chr12 77877446 77877509 -65908946 + L2 LINE L2 3248 3309 -4 2780 191 18 2 chr12 77877587 77878096 -65908359 + MLT2B1 LTR ERVL 1 517 -3 345 362 13 0 chr12 77878555 77878707 -65907748 - L2 LINE L2 -788 2526 2373 260 263 202 9 chr12 77878837 77878951 -65907504 - MIR SINE MIR -5 257 122 659 158 0 18 chr12 77878989 77879103 -65907352 + FRAM SINE Alu 46 157 -19 244 329 108 64 chr12 77879173 77879562 -65906893 - L2 LINE L2 -1010 2304 1899 6997 188 29 1 chr12 77879662 77880920 -65905535 - MST-int LTR MaLR -332 1319 26 3862 189 8 4 chr12 77881027 77881807 -65904648 + L1 LINE L1 4271 5053 -1093 699 184 0 0 chr12 77881942 77882067 -65904388 + MER5A DNA MER1_type 17 141 -48 731 161 23 0 chr12 77882077 77882207 -65904248 + FLAM_C SINE Alu 1 133 0 1094 207 9 24 chr12 77882232 77882445 -65904010 - Tigger5 DNA MER2_type -2084 239 30 253 348 106 29 chr12 77882828 77883035 -65903420 + LTR67 LTR ERVL 153 375 -182 244 293 0 0 chr12 77883149 77883207 -65903248 + MER94 DNA DNA 77 134 0 1127 231 8 26 chr12 77883851 77884119 -65902336 + AluJo SINE Alu 6 268 -44 961 190 20 20 chr12 77884322 77884569 -65901886 - L1 LINE L1 -752 5394 5148 311 172 62 0 chr12 77884567 77884631 -65901824 - L1MA7 LINE L1 -51 6240 6173 * 295 118 191 0 chr12 77884625 77884693 -65901762 + L1PA16 LINE L1 6077 6157 -9 * 1019 127 0 20 chr12 77885014 77885207 -65901248 + AluSg/x SINE Alu 137 326 0 582 277 22 0 chr12 77885578 77885715 -65900740 - MER45A DNA AcHobo -38 140 1 2598 14 0 0 chr12 77886247 77886532 -65899923 + AluY SINE Alu 1 285 -26 942 288 73 40 chr12 77886891 77887436 -65899019 - HsTC2 DNA Tc2 0 1900 1162 628 161 0 17 chr12 77887442 77887560 -65898895 + MER34 LTR ERV1 1 116 -426 1052 245 108 0 chr12 77887562 77887848 -65898607 + MER34 LTR ERV1 226 542 0 2375 224 74 24 chr12 77888122 77889153 -65897302 - L1MC3 LINE L1 -746 5469 5002 2313 179 19 12 chr12 77889153 77889571 -65896884 + MSTB LTR MaLR 1 421 -5 580 247 18 6 chr12 77889571 77889737 -65896718 - L1MC3 LINE L1 -1204 5011 4844 735 236 46 32 chr12 77890867 77891083 -65895372 - MER58A DNA MER1_type 0 224 6 869 251 65 0 chr12 77892498 77892805 -65893650 - L1MC3 LINE L1 -3505 2710 2384 523 127 0 0 chr12 77893054 77893133 -65893322 - AluS SINE Alu -233 79 1 245 389 37 48 chr12 77893375 77893950 -65892505 + L2 LINE L2 2712 3272 0 204 40 0 0 chr12 77894675 77894700 -65891755 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 5580 155 42 24 chr12 77896411 77897450 -65889005 - Tigger1 DNA MER2_type -1359 1059 2 29 28 0 0 chr12 77898097 77898133 -65888322 + AT_rich Low_complexity Low_complexity 1 36 0 414 179 0 0 chr12 77898268 77898346 -65888109 - MLT1A2 LTR MaLR -4 370 293 * 784 138 38 25 chr12 77898345 77898504 -65887951 - MLT1A2 LTR MaLR -212 162 2 198 0 0 0 chr12 77898594 77898616 -65887839 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1819 167 0 20 chr12 77900659 77900959 -65885496 - AluJo SINE Alu -17 295 2 440 311 133 35 chr12 77901196 77901572 -65884883 - L1MC3 LINE L1 -4946 1450 1038 5936 239 22 24 chr12 77901573 77903181 -65883274 - L1MC3 LINE L1 -8 7777 6172 1199 323 65 43 chr12 77903692 77904414 -65882041 - L1M2b LINE L1 -6471 738 1 1778 257 17 13 chr12 77904448 77905044 -65881411 - L1M4 LINE L1 -1606 4540 3943 * 4613 171 28 2 chr12 77905042 77906502 -65879953 + L1P5 LINE L1 4288 5779 -372 180 0 0 0 chr12 77906502 77906522 -65879933 + (TA)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr12 77907637 77907665 -65878790 + AT_rich Low_complexity Low_complexity 1 28 0 254 167 37 0 chr12 77908867 77908975 -65877480 + (TA)n Simple_repeat Simple_repeat 2 113 0 309 257 40 30 chr12 77908975 77909076 -65877379 + L1MC4 LINE L1 6604 6705 -1337 1774 128 0 0 chr12 77909083 77909334 -65877121 - AluSx SINE Alu -32 280 30 22 70 0 0 chr12 77911425 77911468 -65874987 + AT_rich Low_complexity Low_complexity 1 43 0 232 275 201 57 chr12 77911712 77911941 -65874514 - L3 LINE CR1 -285 1292 1031 31 58 0 0 chr12 77912705 77912757 -65873698 + AT_rich Low_complexity Low_complexity 1 52 0 253 255 118 83 chr12 77913187 77913391 -65873064 + MLT2C1 LTR ERVL 187 397 0 * 372 286 95 10 chr12 77913391 77913667 -65872788 + MLT1G3 LTR MaLR 105 434 -108 1027 296 56 113 chr12 77913806 77914469 -65871986 + MLT2F LTR ERVL 37 661 -2 1843 179 17 28 chr12 77914532 77914884 -65871571 - MLT1A1 LTR MaLR 0 365 18 872 336 69 32 chr12 77915445 77915986 -65870469 - L2 LINE L2 0 3313 2702 309 340 19 10 chr12 77916090 77916193 -65870262 + L2 LINE L2 3195 3298 -15 1627 242 72 10 chr12 77916270 77916950 -65869505 - L1M4 LINE L1 -2777 3369 2635 2793 94 33 57 chr12 77916990 77917023 -65869432 - MLT2A1 LTR ERVL 0 444 412 192 77 0 0 chr12 77917023 77917049 -65869406 + (TA)n Simple_repeat Simple_repeat 2 27 0 2793 94 33 57 chr12 77917049 77917470 -65868985 - MLT2A1 LTR ERVL -32 412 1 7208 84 12 2 chr12 77917470 77918451 -65868004 - HERVL-A1 LTR ERVL 0 5654 4664 15911 166 8 13 chr12 77918654 77921291 -65865164 - HERVE LTR ERV1 -2564 5249 2627 6482 25 1 3 chr12 77921393 77922145 -65864310 - MER11D LTR ERVK -146 751 1 28 95 0 0 chr12 77923224 77923308 -65863147 + AT_rich Low_complexity Low_complexity 1 84 0 30 27 0 0 chr12 77924581 77924618 -65861837 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 77924682 77924706 -65861749 + AT_rich Low_complexity Low_complexity 1 24 0 239 315 97 7 chr12 77926784 77926920 -65859535 + MIR SINE MIR 58 204 -58 4188 155 84 49 chr12 77927519 77928554 -65857901 + MER11C LTR ERVK 1 1071 0 27 62 0 0 chr12 77929894 77929942 -65856513 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr12 77930016 77930042 -65856413 + AT_rich Low_complexity Low_complexity 1 26 0 2098 111 7 13 chr12 77930043 77930341 -65856114 - AluY SINE Alu -15 296 1 210 143 0 0 chr12 77933018 77933053 -65853402 + (TATG)n Simple_repeat Simple_repeat 2 36 0 252 211 53 0 chr12 77933896 77933972 -65852483 + (TA)n Simple_repeat Simple_repeat 2 81 0 266 312 112 24 chr12 77934022 77934147 -65852308 + MIR SINE MIR 116 251 -11 26 0 0 0 chr12 77934682 77934708 -65851747 + AT_rich Low_complexity Low_complexity 1 26 0 228 222 41 0 chr12 77934844 77934900 -65851555 - MIR SINE MIR -62 146 97 442 314 147 48 chr12 77935409 77935845 -65850610 - L2 LINE L2 -840 2474 1996 326 290 9 9 chr12 77935953 77936060 -65850395 - MLT2F LTR ERVL 0 663 557 2426 132 14 0 chr12 77936063 77936433 -65850022 + THE1C LTR MaLR 1 375 0 5022 129 58 4 chr12 77936433 77937225 -65849230 + THE1C-int LTR MaLR 1 835 -745 695 319 47 19 chr12 77937378 77937698 -65848757 - MLT2F LTR ERVL -316 347 19 196 287 0 35 chr12 77937885 77937972 -65848483 - L2 LINE L2 -1654 1660 1577 522 274 11 107 chr12 77938039 77938302 -65848153 + MIR SINE MIR 3 240 -22 38 85 0 0 chr12 77938335 77938429 -65848026 + AT_rich Low_complexity Low_complexity 1 94 0 1981 142 4 0 chr12 77938503 77938827 -65847628 + AluSx SINE Alu 1 325 0 312 268 52 0 chr12 77938881 77938978 -65847477 - L1ME LINE L1 -392 5729 5628 2359 62 7 10 chr12 77939968 77940273 -65846182 - AluY SINE Alu -7 304 1 200 298 35 70 chr12 77940478 77940592 -65845863 - MIR SINE MIR -146 116 7 204 381 65 35 chr12 77940601 77940832 -65845623 + L2 LINE L2 2079 2316 -998 2685 183 26 12 chr12 77941263 77941771 -65844684 - MLT2B2 LTR ERVL 0 515 1 1949 125 51 14 chr12 77941771 77942124 -65844331 - ERVL LTR ERVL -7 5757 5392 13431 154 55 18 chr12 77942124 77944573 -65841882 - Tigger2 DNA MER2_type 0 2718 179 643 200 83 11 chr12 77944675 77944855 -65841600 - Tigger2 DNA MER2_type -2523 195 3 1238 194 29 0 chr12 77944856 77945098 -65841357 - ERVL LTR ERVL -370 5394 5146 1633 176 88 0 chr12 77945099 77945406 -65841049 - MER7A DNA MER2_type -1 345 14 3730 189 9 8 chr12 77945418 77946089 -65840366 - ERVL LTR ERVL -616 5148 4477 2259 188 22 0 chr12 77946097 77946497 -65839958 - MSTB LTR MaLR -15 411 3 5859 178 20 2 chr12 77946499 77947530 -65838925 - ERVL LTR ERVL -1274 4490 3441 12631 204 25 30 chr12 77947630 77951046 -65835409 - ERVL LTR ERVL -2338 3426 3 236 139 139 0 chr12 77951048 77951088 -65835367 - ERVL LTR ERVL 0 515 470 443 233 0 0 chr12 77951088 77951174 -65835281 - Tigger5 DNA MER2_type -1 2322 2237 602 161 0 0 chr12 77951185 77951272 -65835183 + Tigger5 DNA MER2_type 1 87 -2236 340 161 16 16 chr12 77951299 77951361 -65835094 - Tigger5 DNA MER2_type -10 2313 2252 * 355 182 0 0 chr12 77951330 77951385 -65835070 - Tigger5 DNA MER2_type -2267 56 2 2258 248 13 32 chr12 77951389 77951913 -65834542 - MLT2B3 LTR ERVL -40 514 1 225 279 122 31 chr12 77952774 77953028 -65833427 - L1M4 LINE L1 -1094 5052 4776 21 36 0 0 chr12 77953615 77953643 -65832812 + AT_rich Low_complexity Low_complexity 1 28 0 4123 123 26 48 chr12 77953951 77954708 -65831747 - Tigger3b DNA MER2_type -1 1231 491 1747 156 35 28 chr12 77954708 77955076 -65831379 - MSTA LTR MaLR 0 428 1 397 107 0 0 chr12 77955076 77955132 -65831323 - Tigger3b DNA MER2_type -737 495 440 251 135 0 0 chr12 77955128 77955165 -65831290 - MSTA LTR MaLR -391 37 1 * 2303 147 88 12 chr12 77955165 77955588 -65830867 - Tigger3b DNA MER2_type -737 494 40 2773 217 54 6 chr12 77955595 77956315 -65830140 + L1PB4 LINE L1 4300 5054 -1092 2807 175 9 4 chr12 77956319 77956846 -65829609 + L1PB4 LINE L1 5263 5792 -364 207 229 0 0 chr12 77956854 77956915 -65829540 + (TA)n Simple_repeat Simple_repeat 1 61 0 309 148 50 10 chr12 77956998 77957099 -65829356 + (TA)n Simple_repeat Simple_repeat 2 106 0 1769 194 10 48 chr12 77957099 77957495 -65828960 + L1PB4 LINE L1 5775 6155 -1 633 238 42 21 chr12 77957555 77957744 -65828711 - LTR48 LTR ERV1 0 787 595 1030 220 121 35 chr12 77957754 77958068 -65828387 - LTR48 LTR ERV1 -314 473 133 280 240 250 10 chr12 77958046 77958150 -65828305 - MER39 LTR ERV1 -578 129 1 * 985 227 20 27 chr12 77958716 77959059 -65827396 - MER39-int LTR ERV1 -164 6167 4541 * 3823 167 131 67 chr12 77959055 77959598 -65826857 - LTR48-int LTR ERV1 -541 5790 5283 180 207 17 69 chr12 77959598 77959656 -65826799 - MER5C DNA MER1_type -115 209 155 3823 167 131 67 chr12 77959656 77959727 -65826728 - LTR48-int LTR ERV1 -1048 5283 5218 2725 136 5 18 chr12 77959727 77960161 -65826294 + MSTA LTR MaLR 1 428 0 3823 167 131 67 chr12 77960161 77960506 -65825949 - LTR48-int LTR ERV1 -1113 5218 4708 915 169 32 22 chr12 77960575 77960778 -65825677 - LTR48-int LTR ERV1 -3059 3272 994 393 231 26 138 chr12 77960796 77960991 -65825464 - LTR48-int LTR ERV1 -3724 1399 1227 290 194 0 48 chr12 77961090 77961152 -65825303 - LTR48-int LTR ERV1 -4116 3421 3363 400 301 23 8 chr12 77961153 77961286 -65825169 - LTR48-int LTR ERV1 -4289 2042 1908 372 77 0 0 chr12 77961293 77961345 -65825110 + (TG)n Simple_repeat Simple_repeat 2 53 0 2062 181 36 119 chr12 77961375 77962103 -65824352 - LTR48-int LTR ERV1 -4330 1890 318 237 273 26 65 chr12 77962174 77962251 -65824204 - tRNA-Glu-GAG tRNA tRNA 0 75 2 410 156 78 120 chr12 77962257 77962424 -65824031 - LTR48-int LTR ERV1 -5129 1202 1043 4002 61 19 6 chr12 77962477 77963001 -65823454 - L1PA7 LINE L1 -5 6149 5619 7318 87 8 1 chr12 77963001 77964012 -65822443 + L1P LINE L1 4034 5051 -1095 3802 184 39 68 chr12 77964097 77965039 -65821416 - LTR48-int LTR ERV1 -5416 915 1 1491 201 353 10 chr12 77965041 77965627 -65820828 - LTR48 LTR ERV1 0 787 1 200 302 0 0 chr12 77965741 77965804 -65820651 + A-rich Low_complexity Low_complexity 1 63 0 11392 149 25 5 chr12 77966792 77968664 -65817791 + Tigger1 DNA MER2_type 2 1910 -508 2696 167 46 1 chr12 77968664 77969413 -65817042 + LTR1B LTR ERV1 3 826 0 * 2793 155 46 4 chr12 77969413 77969908 -65816547 + Tigger1 DNA MER2_type 1903 2418 0 281 293 9 9 chr12 77970425 77970444 -65816011 - L1MA10 LINE L1 0 6334 6316 2107 234 70 76 chr12 77970444 77971210 -65815245 - L1ME1 LINE L1 -9 6575 5820 2025 131 3 3 chr12 77971210 77971508 -65814947 - AluSq SINE Alu -15 298 1 2107 234 70 76 chr12 77971508 77971772 -65814683 - L1ME1 LINE L1 -764 5820 5556 1199 232 172 43 chr12 77971772 77972246 -65814209 - MLT1F LTR MaLR -2 591 1 1887 174 27 27 chr12 77972584 77972987 -65813468 + MER57A LTR ERV1 1 403 0 206 312 169 0 chr12 77972987 77973064 -65813391 - MIR SINE MIR -126 136 47 1441 146 4 8 chr12 77974313 77974560 -65811895 - L1M2 LINE L1 -707 5605 5360 * 1930 161 52 17 chr12 77974556 77975061 -65811394 - L1M2 LINE L1 -757 5389 4928 * 3130 169 47 35 chr12 77975027 77975713 -65810742 + L1MA9 LINE L1 5618 6311 -1 220 242 98 83 chr12 77975868 77976000 -65810455 - MIR SINE MIR -64 198 65 260 295 82 37 chr12 77976431 77976699 -65809756 - L1ME1 LINE L1 -1018 5546 5267 1243 301 90 30 chr12 77976701 77978216 -65808239 + L1ME LINE L1 1 1610 -4470 1734 221 66 95 chr12 77978230 77978948 -65807507 - MER61E LTR ERV1 -4 774 1 4262 249 74 52 chr12 77978952 77981063 -65805392 + L1ME LINE L1 2336 4493 -1587 1540 166 93 23 chr12 77981084 77981385 -65805070 + THE1B LTR MaLR 43 364 0 7686 105 38 4 chr12 77981387 77982511 -65803944 + THE1B-int LTR MaLR 3 1165 -415 1049 91 26 0 chr12 77982620 77982774 -65803681 + L1PB1 LINE L1 5992 6149 -2 1894 133 0 0 chr12 77982784 77983048 -65803407 + AluSx SINE Alu 1 264 -48 198 0 0 0 chr12 77983056 77983078 -65803377 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 3117 267 69 21 chr12 77983170 77984568 -65801887 - L1ME1 LINE L1 -2189 4375 2910 234 230 230 62 chr12 77984580 77984741 -65801714 - L1M4 LINE L1 -1217 4929 4742 1883 177 6 3 chr12 77984754 77985088 -65801367 - L1PA16 LINE L1 -20 6146 5812 2287 298 69 42 chr12 77985091 77986578 -65799877 - L1ME1 LINE L1 -3661 2903 1457 1309 36 0 6 chr12 77986578 77986743 -65799712 + L1PA2 LINE L1 5992 6155 0 2287 298 69 42 chr12 77986743 77987796 -65798659 - L1ME1 LINE L1 -5107 1457 3 5626 44 4 12 chr12 77988715 77989447 -65797008 + L1P LINE L1 2409 3134 -3012 200 161 36 0 chr12 77990467 77990523 -65795932 + (TATG)n Simple_repeat Simple_repeat 2 59 0 852 271 39 4 chr12 77990953 77991182 -65795273 + L1 LINE L1 2584 2820 -3326 2409 71 3 13 chr12 77991330 77991641 -65794814 + AluY SINE Alu 1 308 -3 1940 150 46 0 chr12 77991693 77992019 -65794436 - L1PB4 LINE L1 -52 6104 5764 237 167 30 30 chr12 77992019 77992085 -65794370 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 3082 128 56 11 chr12 77992094 77992784 -65793671 - L1PB4 LINE L1 -365 5791 5071 2110 195 29 0 chr12 77992781 77993223 -65793232 + L1 LINE L1 3569 4023 -2123 * 16005 48 15 1 chr12 77993323 77996146 -65790309 + L1PA5 LINE L1 3296 6160 0 31 68 0 0 chr12 77996205 77996264 -65790191 + AT_rich Low_complexity Low_complexity 1 59 0 252 0 0 0 chr12 77997225 77997253 -65789202 + (CA)n Simple_repeat Simple_repeat 1 28 0 417 39 0 0 chr12 77997808 77997859 -65788596 + (CA)n Simple_repeat Simple_repeat 2 52 0 475 181 12 0 chr12 77998541 77998624 -65787831 + AluJ/FLAM SINE Alu 1 84 -228 23 33 0 0 chr12 77998730 77998760 -65787695 + AT_rich Low_complexity Low_complexity 1 30 0 2539 20 0 3 chr12 77998971 77999264 -65787191 + AluYa5 SINE Alu 1 292 -19 201 39 0 0 chr12 77999264 77999290 -65787165 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 549 273 106 62 chr12 77999441 77999650 -65786805 - L1MEc LINE L1 -2980 3235 3037 1544 189 3 14 chr12 77999650 77999941 -65786514 + AluJb SINE Alu 1 288 -24 549 273 106 62 chr12 77999941 78000365 -65786090 - L1MEc LINE L1 -3178 3037 2574 * 1027 313 61 15 chr12 78000345 78001013 -65785442 - L1MEc LINE L1 -5121 1275 577 1985 167 43 0 chr12 78001147 78001476 -65784979 - MER7A DNA MER2_type 0 346 6 1373 185 59 17 chr12 78001485 78001821 -65784634 + MLT2C1 LTR ERVL 1 414 0 657 243 12 17 chr12 78002039 78002212 -65784243 - L1MEc LINE L1 -6182 214 43 21 0 0 0 chr12 78004139 78004160 -65782295 + AT_rich Low_complexity Low_complexity 1 21 0 182 219 0 0 chr12 78005782 78005823 -65780632 + L2 LINE L2 3273 3313 0 570 277 77 39 chr12 78005866 78006126 -65780329 + L2 LINE L2 3042 3311 -2 653 78 26 17 chr12 78007090 78007205 -65779250 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 21 0 0 0 chr12 78007222 78007243 -65779212 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 78008793 78008816 -65777639 + AT_rich Low_complexity Low_complexity 1 23 0 267 193 88 0 chr12 78010758 78010815 -65775640 - MER52A LTR ERV1 -403 1352 1291 1204 230 209 43 chr12 78010876 78011484 -65774971 - LTR28 LTR ERV1 -311 709 1 1104 139 12 0 chr12 78011726 78011892 -65774563 + AluSg/x SINE Alu 137 304 -8 180 0 0 0 chr12 78012050 78012070 -65774385 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr12 78012287 78012310 -65774145 + AT_rich Low_complexity Low_complexity 1 23 0 1540 102 59 0 chr12 78012940 78013196 -65773259 + L1MA6 LINE L1 6030 6300 0 183 42 0 0 chr12 78013373 78013397 -65773058 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1982 145 0 3 chr12 78013717 78014004 -65772451 + AluSx SINE Alu 1 288 -24 270 0 0 0 chr12 78014004 78014034 -65772421 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1982 145 0 3 chr12 78014034 78014056 -65772399 + AluSx SINE Alu 288 309 -3 284 251 1 21 chr12 78014231 78014327 -65772128 - L1MEd LINE L1 -4886 1233 1153 21 0 0 0 chr12 78016553 78016574 -65769881 + AT_rich Low_complexity Low_complexity 1 21 0 1388 171 17 4 chr12 78016643 78016920 -65769535 - AluJb SINE Alu 0 326 47 21 0 0 0 chr12 78017424 78017445 -65769010 + AT_rich Low_complexity Low_complexity 1 21 0 55 16 0 0 chr12 78017723 78017785 -65768670 + AT_rich Low_complexity Low_complexity 1 62 0 491 318 63 85 chr12 78018201 78018568 -65767887 + L1ME3A LINE L1 1041 1510 -4862 1169 304 81 19 chr12 78018569 78019134 -65767321 + L1ME3A LINE L1 5556 6155 -15 365 287 93 21 chr12 78019162 78019451 -65767004 + L1ME3A LINE L1 5266 5575 -807 772 325 65 9 chr12 78019528 78019995 -65766460 + L1ME3A LINE L1 5710 6198 -200 1808 137 3 27 chr12 78020539 78020860 -65765595 - AluSq SINE Alu 0 314 1 23 33 0 0 chr12 78021141 78021171 -65765284 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 78021465 78021494 -65764961 + AT_rich Low_complexity Low_complexity 1 29 0 207 167 42 0 chr12 78021541 78021589 -65764866 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1165 225 100 0 chr12 78022944 78023215 -65763240 - MER2 DNA MER2_type -24 321 24 1966 164 8 19 chr12 78023365 78023737 -65762718 - L1MA4 LINE L1 -288 6012 5645 268 319 42 14 chr12 78024664 78024877 -65761578 - L1MCc LINE L1 -4921 2201 1983 23 33 0 0 chr12 78024947 78024977 -65761478 + AT_rich Low_complexity Low_complexity 1 30 0 3416 62 11 0 chr12 78025643 78026082 -65760373 - HERVL-A1 LTR ERVL -5210 444 1 2569 117 31 53 chr12 78026082 78026534 -65759921 - MLT2A1 LTR ERVL -2 442 1 737 257 43 14 chr12 78026596 78026876 -65759579 - L1MCc LINE L1 -5145 1277 990 1438 243 86 68 chr12 78027370 78027991 -65758464 - L1MCc LINE L1 -5444 978 2 264 292 25 33 chr12 78029974 78030094 -65756361 + MLT1L LTR MaLR 428 546 -69 247 216 20 0 chr12 78031478 78031529 -65754926 + MER116 DNA Mariner 1 52 -28 253 157 0 20 chr12 78032738 78032798 -65753657 - L1MD3 LINE L1 -361 7619 7389 2427 197 30 12 chr12 78032834 78033398 -65753057 - L1MA10 LINE L1 -828 5318 4745 4596 181 43 35 chr12 78033400 78034421 -65752034 + L1MA10 LINE L1 5303 6331 -3 235 238 71 24 chr12 78034516 78034600 -65751855 + MER112 DNA MER1_type 10 97 -163 357 325 65 36 chr12 78036252 78036529 -65749926 + L1 LINE L1 3489 3773 -2373 344 262 191 33 chr12 78036530 78036740 -65749715 - MLT1J1 LTR MaLR -6 440 198 270 272 12 37 chr12 78036893 78036974 -65749481 - MLT1J1 LTR MaLR -391 164 86 833 252 97 12 chr12 78037015 78037356 -65749099 - Charlie4a DNA MER1_type -138 370 1 2106 147 98 54 chr12 78038714 78038957 -65747498 - LTR1B LTR ERV1 -314 512 281 2243 120 0 13 chr12 78038957 78039274 -65747181 - AluSq SINE Alu 0 313 1 2106 147 98 54 chr12 78039274 78039507 -65746948 - LTR1B LTR ERV1 -545 281 36 1082 35 104 0 chr12 78039523 78039667 -65746788 - L1PA2 LINE L1 0 6155 5997 1243 0 0 0 chr12 78039667 78039805 -65746650 + L1PA2 LINE L1 5826 5963 -192 320 100 0 0 chr12 78039805 78039855 -65746600 - LTR1B LTR ERV1 -776 50 1 13299 149 26 24 chr12 78039858 78040069 -65746386 - HUERS-P2 LTR ERV1 0 3088 2879 279 0 0 0 chr12 78040069 78040100 -65746355 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13299 149 26 24 chr12 78040100 78040914 -65745541 - HUERS-P2 LTR ERV1 -209 2879 2068 2107 94 4 0 chr12 78040914 78041191 -65745264 + AluSg SINE Alu 1 278 -32 13299 149 26 24 chr12 78041191 78041533 -65744922 - HUERS-P2 LTR ERV1 -1020 2068 1728 2283 109 0 0 chr12 78041533 78041845 -65744610 - AluSx SINE Alu 0 312 1 13299 149 26 24 chr12 78041845 78042705 -65743750 - HUERS-P2 LTR ERV1 -1360 1728 854 1182 237 37 35 chr12 78042696 78043198 -65743257 - HUERS-P2 LTR ERV1 -2637 599 2 * 2695 203 161 34 chr12 78043201 78043932 -65742523 - LTR1B LTR ERV1 -2 824 1 251 286 0 0 chr12 78044511 78044588 -65741867 + L1MC4 LINE L1 6624 6700 -1342 220 344 94 0 chr12 78044918 78045014 -65741441 - MIR3 SINE MIR -13 195 91 256 372 0 0 chr12 78045204 78045298 -65741157 + MIR SINE MIR 32 125 -83 189 121 0 0 chr12 78045801 78045834 -65740621 + (CAT)n Simple_repeat Simple_repeat 2 34 0 240 362 14 14 chr12 78045974 78046115 -65740340 + LTR16C LTR ERVL 349 489 -2 1596 324 166 26 chr12 78046124 78046598 -65739857 + L2 LINE L2 1551 1957 -1356 195 42 0 0 chr12 78046598 78046622 -65739833 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1596 324 166 26 chr12 78046622 78047524 -65738931 + L2 LINE L2 1957 3129 -184 2313 79 0 28 chr12 78047785 78048103 -65738352 - AluY SINE Alu -2 309 1 1975 134 7 3 chr12 78050609 78050907 -65735548 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 78050914 78050937 -65735518 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr12 78052881 78052910 -65733545 + (A)n Simple_repeat Simple_repeat 1 29 0 897 240 86 50 chr12 78052910 78053189 -65733266 + AluJb SINE Alu 1 289 -13 251 214 64 36 chr12 78053735 78053825 -65732630 + (TATATG)n Simple_repeat Simple_repeat 4 101 -46 1719 186 72 3 chr12 78053825 78054186 -65732269 - MLT1B LTR MaLR -2 388 3 251 214 64 36 chr12 78054186 78054235 -65732220 + (TATATG)n Simple_repeat Simple_repeat 101 147 0 4835 149 82 50 chr12 78054656 78055812 -65730643 + pTR5 LTR ERV1 5 581 -133 1702 208 134 20 chr12 78056093 78056588 -65729867 - MER101B LTR ERV1 -29 517 2 584 333 20 16 chr12 78057549 78057795 -65728660 + MERVL LTR ERVL 3217 3463 -2191 273 346 32 32 chr12 78058715 78058932 -65727523 + MERVL LTR ERVL 5080 5296 -189 336 108 10 49 chr12 78059346 78059424 -65727031 - MER5A DNA MER1_type -111 78 4 2171 127 0 0 chr12 78059488 78059780 -65726675 - AluSg SINE Alu -18 292 1 1847 205 80 19 chr12 78060194 78060816 -65725639 + MER67C LTR ERV1 1 710 0 21 0 0 0 chr12 78061330 78061351 -65725104 + AT_rich Low_complexity Low_complexity 1 21 0 615 166 45 45 chr12 78061709 78061866 -65724589 - L1MC2 LINE L1 0 6344 6188 827 242 76 0 chr12 78062102 78062300 -65724155 - MER20 DNA MER1_type 0 219 7 2499 154 29 2 chr12 78063081 78063496 -65722959 - MSTB LTR MaLR 0 426 1 266 352 28 48 chr12 78063516 78063661 -65722794 + MIR SINE MIR 10 151 -111 217 227 23 0 chr12 78063728 78063772 -65722683 - L2 LINE L2 -12 3260 3216 22 56 0 0 chr12 78063980 78064016 -65722439 + AT_rich Low_complexity Low_complexity 1 36 0 267 314 131 15 chr12 78066632 78066769 -65719686 - MIR SINE MIR -51 211 59 30 45 0 0 chr12 78067257 78067301 -65719154 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr12 78067317 78067339 -65719116 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 78067886 78067929 -65718526 + AT_rich Low_complexity Low_complexity 1 43 0 188 268 0 0 chr12 78068645 78068686 -65717769 + MER5B DNA MER1_type 1 41 -137 974 242 28 0 chr12 78070059 78070274 -65716181 - MER58A DNA MER1_type -2 222 2 283 329 94 0 chr12 78070319 78070468 -65715987 + MIR3 SINE MIR 41 203 -5 23 0 0 0 chr12 78070555 78070578 -65715877 + AT_rich Low_complexity Low_complexity 1 23 0 216 293 0 0 chr12 78071263 78071321 -65715134 - L2 LINE L2 -8 3305 3248 292 341 62 49 chr12 78071649 78071875 -65714580 - L2 LINE L2 -513 2801 2573 1197 86 5 149 chr12 78072426 78072648 -65713807 + AluSg/x SINE Alu 113 302 -7 205 130 0 43 chr12 78072735 78072781 -65713674 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1295 296 41 12 chr12 78073796 78074212 -65712243 - LTR16B LTR ERVL -2 462 35 1654 328 40 51 chr12 78074604 78074687 -65711768 - HERV16 LTR ERVL -1903 3093 3011 2235 121 0 6 chr12 78074687 78075000 -65711455 - AluSx SINE Alu -1 311 1 1654 328 40 51 chr12 78075000 78075755 -65710700 - HERV16 LTR ERVL -1985 3011 2264 2614 163 80 13 chr12 78075772 78076323 -65710132 - L1MC3 LINE L1 -8 7777 7190 234 352 0 0 chr12 78076323 78076414 -65710041 - MLT1F1 LTR MaLR -442 125 35 573 152 100 0 chr12 78076450 78076644 -65709811 - L1MC3 LINE L1 -747 7038 6706 826 344 35 19 chr12 78076676 78077266 -65709189 - HERV16 LTR ERVL -3480 2284 1612 324 325 0 16 chr12 78077438 78077564 -65708891 - HERV16 LTR ERVL -3625 1371 1248 598 335 103 10 chr12 78077619 78077920 -65708535 - HERV16 LTR ERVL -3861 1135 807 2179 151 20 3 chr12 78079057 78079414 -65707041 + MSTB1 LTR MaLR 14 376 -56 5085 90 3 3 chr12 78079422 78080132 -65706323 - L1PA8 LINE L1 -8 6164 5455 2002 98 44 0 chr12 78080132 78080492 -65705963 + L1PA8 LINE L1 5069 5438 -734 453 92 40 13 chr12 78080492 78080568 -65705887 + MSTB1 LTR MaLR 352 429 -3 2456 75 0 0 chr12 78080973 78081279 -65705176 + AluY SINE Alu 6 311 0 288 0 0 0 chr12 78081823 78081855 -65704600 + (CA)n Simple_repeat Simple_repeat 2 33 0 7247 33 4 0 chr12 78082310 78083388 -65703067 + L1PA4 LINE L1 5095 6177 0 1020 252 230 12 chr12 78083556 78084071 -65702384 - MLT1G LTR MaLR 0 590 6 231 88 0 0 chr12 78084181 78084215 -65702240 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 736 270 88 0 chr12 78084301 78084505 -65701950 + MIR SINE MIR 11 232 -30 304 323 55 31 chr12 78085423 78085550 -65700905 - L2 LINE L2 -2 3270 3141 2662 113 3 0 chr12 78085631 78086002 -65700453 + THE1C LTR MaLR 4 375 0 9408 122 48 25 chr12 78086002 78087546 -65698909 + THE1C-int LTR MaLR 1 1580 0 2592 126 3 0 chr12 78087546 78087920 -65698535 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr12 78089071 78089102 -65697353 + (CA)n Simple_repeat Simple_repeat 1 62 0 279 0 0 0 chr12 78089102 78089133 -65697322 + (CA)n Simple_repeat Simple_repeat 2 32 0 368 347 41 24 chr12 78089161 78089331 -65697124 - MLT1K LTR MaLR -219 369 197 756 254 69 29 chr12 78090755 78091031 -65695424 + LTR16A1 LTR ERVL 171 457 0 7531 203 38 3 chr12 78091507 78093227 -65693228 + L1 LINE L1 2701 4479 -1667 582 116 0 0 chr12 78093432 78093527 -65692928 + L1MA4 LINE L1 6198 6292 -8 38 0 0 0 chr12 78093539 78093577 -65692878 + AT_rich Low_complexity Low_complexity 1 38 0 607 311 23 40 chr12 78093698 78093997 -65692458 - LTR16A LTR ERVL 0 450 157 252 59 0 0 chr12 78094097 78094131 -65692324 + (TG)n Simple_repeat Simple_repeat 2 35 0 735 339 39 39 chr12 78095022 78095462 -65690993 - LTR16A LTR ERVL -9 441 2 466 275 0 22 chr12 78095542 78095680 -65690775 + L2 LINE L2 3179 3313 0 269 388 107 17 chr12 78096248 78096426 -65690029 + L2 LINE L2 2855 3048 -265 25 0 0 0 chr12 78096687 78096712 -65689743 + AT_rich Low_complexity Low_complexity 1 25 0 222 252 299 0 chr12 78097182 78097289 -65689166 - L2 LINE L2 -1 3312 3174 201 357 71 24 chr12 78097351 78097406 -65689049 - L2 LINE L2 0 3272 3221 2261 98 0 0 chr12 78097406 78097701 -65688754 + AluSc SINE Alu 1 295 -14 201 357 71 24 chr12 78097701 78097771 -65688684 - L2 LINE L2 -51 3221 3141 2025 87 43 4 chr12 78097978 78098255 -65688200 + AluY SINE Alu 5 292 -19 364 75 0 86 chr12 78098256 78098349 -65688106 + (TA)n Simple_repeat Simple_repeat 2 86 0 2428 84 0 0 chr12 78098703 78099014 -65687441 - AluSx SINE Alu -1 311 1 1150 172 29 53 chr12 78099228 78099496 -65686959 - L1MA8 LINE L1 -265 6026 5761 702 276 89 69 chr12 78100557 78101049 -65685406 + L2 LINE L2 2812 3313 0 1107 303 81 32 chr12 78103456 78104023 -65682432 + L1MC5 LINE L1 5320 5914 -1894 295 275 124 56 chr12 78104169 78104655 -65681800 + L1MC5 LINE L1 6300 6829 -985 1813 150 13 10 chr12 78105009 78105441 -65681014 + LTR69 LTR ERVL 1 478 -110 * 2037 110 17 10 chr12 78105433 78105732 -65680723 - THE1B LTR MaLR -20 344 44 453 188 12 0 chr12 78105745 78105825 -65680630 + LTR69 LTR ERVL 498 578 -10 760 302 0 15 chr12 78105833 78106038 -65680417 - MIR SINE MIR -56 206 5 22 0 0 0 chr12 78106258 78106280 -65680175 + AT_rich Low_complexity Low_complexity 1 22 0 423 137 0 14 chr12 78109263 78109336 -65677119 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 22 35 0 0 chr12 78109527 78109556 -65676899 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr12 78109722 78109759 -65676696 + AT_rich Low_complexity Low_complexity 1 37 0 2275 99 3 0 chr12 78110149 78110443 -65676012 + AluY SINE Alu 1 295 -16 707 291 5 10 chr12 78110545 78110748 -65675707 + MIR SINE MIR 37 238 -24 2824 196 28 0 chr12 78111971 78112465 -65673990 - MLT2B3 LTR ERVL -46 508 1 23 54 0 0 chr12 78112638 78112675 -65673780 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr12 78113514 78113549 -65672906 + AT_rich Low_complexity Low_complexity 1 35 0 1770 133 3 39 chr12 78113557 78113693 -65672762 + AluSg SINE Alu 5 144 -173 2441 78 0 0 chr12 78113693 78114000 -65672455 + AluY SINE Alu 1 307 -4 1770 133 3 39 chr12 78114000 78114186 -65672269 + AluSg SINE Alu 144 317 0 1363 209 49 6 chr12 78114455 78114781 -65671674 - MER46B DNA MER2_type 0 236 22 26 50 0 0 chr12 78115193 78115233 -65671222 + AT_rich Low_complexity Low_complexity 1 40 0 25 51 0 0 chr12 78115436 78115475 -65670980 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr12 78115594 78115632 -65670823 + AT_rich Low_complexity Low_complexity 1 38 0 550 251 54 105 chr12 78116069 78116172 -65670283 - L1ME LINE L1 -486 5684 5577 752 167 7 0 chr12 78116172 78116322 -65670133 + L1MB3 LINE L1 6030 6180 -3 550 251 54 105 chr12 78116322 78116893 -65669562 - L1ME LINE L1 -593 5577 5054 27 0 0 0 chr12 78117073 78117100 -65669355 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr12 78117467 78117502 -65668953 + AT_rich Low_complexity Low_complexity 1 35 0 564 248 121 0 chr12 78117521 78117719 -65668736 + MER46C DNA MER2_type 20 241 -97 313 291 129 13 chr12 78117762 78118064 -65668391 + L1M4 LINE L1 3048 3384 -2762 589 237 76 36 chr12 78118188 78118412 -65668043 + L1MEc LINE L1 76 308 -6088 * 11108 194 14 27 chr12 78118409 78121301 -65665154 - L1PA10 LINE L1 -3027 3434 559 13120 143 27 0 chr12 78121301 78124283 -65662172 + L1PA10 LINE L1 3433 6471 -12 27 0 0 0 chr12 78124283 78124310 -65662145 + AT_rich Low_complexity Low_complexity 1 27 0 1323 259 18 34 chr12 78124390 78124830 -65661625 + L1MEc LINE L1 2415 2847 -3368 310 376 38 13 chr12 78124908 78125065 -65661390 - MIR3 SINE MIR -35 173 13 1333 223 36 40 chr12 78125132 78125607 -65660848 + L1MEc LINE L1 2850 3322 -2893 556 240 38 16 chr12 78125778 78125961 -65660494 + MER53 DNA DNA 3 189 0 382 313 30 52 chr12 78126516 78126749 -65659706 + L1ME4a LINE L1 5737 5964 -157 387 225 106 66 chr12 78126803 78126954 -65659501 + LTR40a LTR ERVL 1 157 -362 663 299 55 25 chr12 78127118 78127392 -65659063 + LTR40a LTR ERVL 238 519 0 399 316 68 32 chr12 78127439 78127717 -65658738 - MLT1I LTR MaLR -54 355 68 380 264 54 36 chr12 78127836 78128003 -65658452 + L1ME4a LINE L1 5930 6099 -22 287 181 72 14 chr12 78128004 78128142 -65658313 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 21 36 0 0 chr12 78129162 78129190 -65657265 + AT_rich Low_complexity Low_complexity 1 28 0 227 373 39 26 chr12 78129364 78129517 -65656938 + L2 LINE L2 2905 3059 -213 653 306 60 0 chr12 78129837 78130020 -65656435 + MIR SINE MIR 41 234 -28 799 379 47 12 chr12 78130271 78130779 -65655676 - L2 LINE L2 -4 3309 2783 556 335 53 87 chr12 78130813 78131017 -65655438 - L2 LINE L2 -634 2680 2471 2014 125 42 33 chr12 78131017 78131378 -65655077 - THE1B LTR MaLR 0 364 1 556 335 53 87 chr12 78131378 78131475 -65654980 - L2 LINE L2 -843 2471 2372 798 41 0 0 chr12 78131475 78131573 -65654882 + L1PA5 LINE L1 6049 6146 -8 556 335 53 87 chr12 78131573 78131739 -65654716 - L2 LINE L2 -942 2372 2228 1086 135 73 100 chr12 78134589 78134849 -65651606 + MLT1B LTR MaLR 138 390 0 1720 144 15 0 chr12 78135072 78135336 -65651119 + MER50 LTR ERV1 455 722 -12 2037 105 52 0 chr12 78135611 78135897 -65650558 + AluSp SINE Alu 1 301 -12 297 233 68 41 chr12 78135901 78136047 -65650408 - L1MEd LINE L1 -4943 1176 1027 1798 309 100 29 chr12 78136603 78137434 -65649021 - L2 LINE L2 -433 2881 1992 261 79 0 0 chr12 78137437 78137475 -65648980 + L1MA4 LINE L1 6257 6294 -6 29 47 0 0 chr12 78137519 78137562 -65648893 + AT_rich Low_complexity Low_complexity 1 43 0 4785 109 19 0 chr12 78137769 78138447 -65648008 + LTR8 LTR ERV1 1 691 0 379 275 120 12 chr12 78138527 78138694 -65647761 - L2 LINE L2 -1496 1818 1634 947 307 123 45 chr12 78138758 78139386 -65647069 - L2 LINE L2 -2114 1200 524 1934 118 0 67 chr12 78139420 78139734 -65646721 + AluSg SINE Alu 1 293 -17 926 284 28 58 chr12 78139745 78140104 -65646351 + HsTC2a DNA Tc2 29 376 -368 4894 136 13 5 chr12 78140106 78140885 -65645570 + L1PA15 LINE L1 5380 6164 -1 639 273 38 21 chr12 78140941 78141230 -65645225 + HsTC2a DNA Tc2 384 677 -65 261 146 167 0 chr12 78141416 78141464 -65644991 + MER5A DNA MER1_type 129 184 -5 184 234 40 145 chr12 78141813 78141937 -65644518 - MIR SINE MIR -19 243 133 497 41 14 0 chr12 78142865 78142938 -65643517 - L1P LINE L1 -3996 2150 2077 498 323 75 25 chr12 78144399 78144839 -65641616 + L1MC/D LINE L1 5254 5715 -2093 1476 276 22 66 chr12 78144883 78145579 -65640876 - L1ME1 LINE L1 -10 6168 5501 693 294 118 8 chr12 78145578 78145976 -65640479 + L1M4c LINE L1 1211 1652 -4732 * 639 283 105 60 chr12 78146028 78146378 -65640077 + HsTC2a DNA Tc2 3 373 -1527 13097 45 0 0 chr12 78146378 78148773 -65637682 + L1PA5 LINE L1 3753 6152 -2 639 283 105 60 chr12 78148773 78148804 -65637651 + HsTC2a DNA Tc2 373 401 -343 387 221 55 24 chr12 78148844 78148971 -65637484 + HsTC2a DNA Tc2 487 617 -125 24 32 0 0 chr12 78149027 78149058 -65637397 + AT_rich Low_complexity Low_complexity 1 31 0 1459 223 48 17 chr12 78149355 78149709 -65636746 + MLT1A1 LTR MaLR 1 365 0 30 27 0 0 chr12 78149849 78149886 -65636569 + AT_rich Low_complexity Low_complexity 1 37 0 1951 84 0 91 chr12 78150579 78150938 -65635517 + AluSg SINE Alu 1 331 0 26 0 0 0 chr12 78151287 78151313 -65635142 + AT_rich Low_complexity Low_complexity 1 26 0 1665 228 48 21 chr12 78151656 78152090 -65634365 - MLT1C LTR MaLR 0 467 22 229 238 117 81 chr12 78152170 78152393 -65634062 - L1MC4a LINE L1 -1755 6053 5823 250 295 16 111 chr12 78152685 78152875 -65633580 + MIR SINE MIR 91 262 0 338 311 53 31 chr12 78153259 78153487 -65632968 + L1ME LINE L1 4369 4601 -1545 450 318 108 39 chr12 78154264 78154773 -65631682 + L1ME LINE L1 4806 5349 -797 225 300 56 22 chr12 78154850 78154940 -65631515 + L1ME LINE L1 5533 5625 -496 1780 139 110 30 chr12 78154954 78155291 -65631164 - THE1B LTR MaLR 0 364 1 42365 35 24 2 chr12 78155315 78161335 -65625120 - L1PA3 LINE L1 0 6155 1 23 33 0 0 chr12 78161450 78161480 -65624975 + AT_rich Low_complexity Low_complexity 1 30 0 303 317 58 69 chr12 78162509 78162856 -65623599 + MLT1J LTR MaLR 95 437 -74 1923 149 36 30 chr12 78162994 78163356 -65623099 + THE1B LTR MaLR 1 364 0 28 48 0 0 chr12 78163779 78163821 -65622634 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr12 78165003 78165027 -65621428 + AT_rich Low_complexity Low_complexity 1 24 0 351 303 8 8 chr12 78165055 78165177 -65621278 + L1MC3 LINE L1 60 181 -6215 446 0 19 0 chr12 78165381 78165435 -65621020 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1121 267 122 109 chr12 78165945 78167029 -65619426 - MER52A LTR ERV1 0 1755 1 909 239 82 24 chr12 78167170 78167550 -65618905 + L1MC3 LINE L1 4500 4901 -1314 6014 219 80 19 chr12 78168038 78169033 -65617422 + L1MC3 LINE L1 6008 7157 -697 3136 74 60 18 chr12 78169033 78169468 -65616987 - MLT2A2 LTR ERVL 0 453 1 6014 219 80 19 chr12 78169468 78170204 -65616251 + L1MC3 LINE L1 7157 7846 -8 567 321 96 8 chr12 78170979 78171219 -65615236 - L2 LINE L2 -364 2950 2690 2586 145 12 2 chr12 78171368 78171782 -65614673 - HSMAR2 DNA Mariner -882 420 3 2024 155 19 27 chr12 78172381 78172748 -65613707 - THE1B LTR MaLR 0 364 1 1114 342 89 32 chr12 78173296 78173841 -65612614 - L2 LINE L2 0 3313 2801 255 114 0 0 chr12 78173841 78173885 -65612570 + (TG)n Simple_repeat Simple_repeat 1 44 0 1114 342 89 32 chr12 78173885 78174372 -65612083 - L2 LINE L2 -512 2801 2230 32 26 0 0 chr12 78175142 78175181 -65611274 + AT_rich Low_complexity Low_complexity 1 39 0 2437 127 67 5 chr12 78176694 78177095 -65609360 - MSTB LTR MaLR 0 426 1 395 296 159 11 chr12 78177553 78177742 -65608713 - MIR SINE MIR -43 219 3 313 242 83 23 chr12 78178739 78178871 -65607584 - Looper DNA T2_type 0 1558 1419 24 100 0 0 chr12 78178896 78178976 -65607479 + AT_rich Low_complexity Low_complexity 1 80 0 2339 199 56 16 chr12 78178994 78179552 -65606903 - Looper DNA T2_type -598 960 381 580 243 42 0 chr12 78179568 78179712 -65606743 - MER58B DNA MER1_type -8 333 184 1210 216 80 110 chr12 78179727 78180154 -65606301 - MLT2B1 LTR ERVL 0 414 1 1288 150 18 5 chr12 78180154 78180408 -65606047 - ERVL-B1 LTR ERVL -7 5757 5472 991 230 91 11 chr12 78180474 78180826 -65605629 - Looper DNA T2_type -1176 382 3 2233 103 0 10 chr12 78181310 78181610 -65604845 - AluSc SINE Alu -12 297 1 203 152 0 0 chr12 78181956 78181989 -65604466 + GA-rich Low_complexity Low_complexity 4 36 0 235 295 238 9 chr12 78182438 78182543 -65603912 + MIR SINE MIR 18 146 -62 446 177 27 136 chr12 78183010 78183230 -65603225 + L1MC4 LINE L1 7844 8039 -3 2107 172 11 0 chr12 78183492 78183846 -65602609 + MER47A DNA MER2_type 8 365 -1 251 295 27 45 chr12 78184919 78185031 -65601424 - MIR3 SINE MIR -95 113 4 2263 84 0 7 chr12 78185356 78185652 -65600803 + AluY SINE Alu 1 294 -17 350 21 21 0 chr12 78185655 78185702 -65600753 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 270 268 312 0 chr12 78186257 78186395 -65600060 + MER5A DNA MER1_type 9 189 0 298 315 137 30 chr12 78186519 78186716 -65599739 - MIR SINE MIR -30 232 15 2506 52 10 3 chr12 78186839 78187144 -65599311 + AluY SINE Alu 1 307 -4 1800 163 139 13 chr12 78187348 78187728 -65598727 + MSTA LTR MaLR 1 428 0 1371 175 3 96 chr12 78187752 78188084 -65598371 + AluJo SINE Alu 1 301 -1 209 238 97 83 chr12 78188388 78188465 -65597990 - MIR SINE MIR 0 262 188 2795 6 0 10 chr12 78188465 78188779 -65597676 - AluYa5 SINE Alu 0 311 1 209 238 97 83 chr12 78188779 78188890 -65597565 - MIR SINE MIR -74 188 35 226 259 0 0 chr12 78191847 78191901 -65594554 + T-rich Low_complexity Low_complexity 1 54 0 213 39 0 0 chr12 78192924 78192950 -65593505 + (TG)n Simple_repeat Simple_repeat 2 27 0 218 304 40 64 chr12 78194993 78195118 -65591337 - MIR SINE MIR -66 142 21 490 310 94 44 chr12 78195408 78195747 -65590708 + L1ME LINE L1 3742 4097 -2049 297 307 143 12 chr12 78195802 78196229 -65590226 + L1ME LINE L1 4211 4693 -1453 243 290 83 21 chr12 78196412 78196605 -65589850 + L1ME LINE L1 4981 5185 -961 371 288 96 22 chr12 78196685 78196992 -65589463 + L1ME LINE L1 5312 5635 -527 265 284 0 0 chr12 78197292 78197366 -65589089 + L1MEd LINE L1 71 144 -5975 312 262 93 67 chr12 78198013 78198238 -65588217 + L1MEd LINE L1 782 1012 -5107 1040 195 221 12 chr12 78198243 78198587 -65587868 + Tigger6a DNA MER2_type 269 684 -399 1950 123 18 21 chr12 78198587 78198872 -65587583 + AluSx SINE Alu 1 284 -28 347 190 181 35 chr12 78198903 78199019 -65587436 + MLT2C1 LTR ERVL 44 176 -221 * 1869 214 72 56 chr12 78198936 78199474 -65586981 + MLT1E2 LTR MaLR 80 626 0 1440 171 30 108 chr12 78199479 78199599 -65586856 + Tigger6a DNA MER2_type 688 816 -781 2043 127 9 29 chr12 78199599 78199915 -65586540 - AluSx SINE Alu 0 312 3 1440 171 30 108 chr12 78199915 78200222 -65586233 + Tigger6a DNA MER2_type 816 1082 -1 251 342 100 0 chr12 78200601 78200721 -65585734 + MIR SINE MIR 49 180 -82 218 258 0 97 chr12 78200770 78200863 -65585592 - L2 LINE L2 -225 3047 2964 209 208 21 0 chr12 78201339 78201387 -65585068 + (CA)n Simple_repeat Simple_repeat 1 49 0 332 278 96 17 chr12 78201704 78201819 -65584636 + MIR3 SINE MIR 82 205 -3 197 326 47 39 chr12 78201994 78202123 -65584332 + L2 LINE L2 2236 2365 -949 42 36 0 0 chr12 78203432 78203488 -65582967 + AT_rich Low_complexity Low_complexity 1 56 0 2349 243 11 40 chr12 78203564 78204133 -65582322 + MLT2B3 LTR ERVL 3 554 0 1001 235 86 10 chr12 78204556 78204858 -65581597 - L1MB5 LINE L1 -1260 4886 4562 * 3986 216 11 25 chr12 78204851 78205026 -65581429 + L1MB5 LINE L1 4884 5060 -1114 2491 65 0 0 chr12 78205026 78205332 -65581123 + AluY SINE Alu 1 306 -5 3986 216 11 25 chr12 78205332 78206457 -65579998 + L1MB5 LINE L1 5060 6166 -8 212 275 175 25 chr12 78206601 78206721 -65579734 + L2 LINE L2 3153 3290 -23 2103 169 0 0 chr12 78207151 78207517 -65578938 - MER47A DNA MER2_type 0 366 1 770 250 85 35 chr12 78208568 78208944 -65577511 - Charlie2a DNA MER1_type -1231 1631 1237 21 0 0 0 chr12 78209057 78209078 -65577377 + AT_rich Low_complexity Low_complexity 1 21 0 2341 72 16 3 chr12 78209279 78209585 -65576870 - AluY SINE Alu -1 310 1 1641 163 47 68 chr12 78210078 78210281 -65576174 - THE1C LTR MaLR 0 375 182 2304 60 17 17 chr12 78210281 78210580 -65575875 - AluY SINE Alu -12 299 1 1641 163 47 68 chr12 78210580 78210756 -65575699 - THE1C LTR MaLR -193 182 4 9257 134 7 51 chr12 78210759 78212409 -65574046 - THE1C-int LTR MaLR 0 1580 3 1702 160 73 22 chr12 78212411 78212768 -65573687 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr12 78212805 78212842 -65573613 + AT_rich Low_complexity Low_complexity 1 37 0 1068 228 107 51 chr12 78213572 78213945 -65572510 + MSTD LTR MaLR 1 394 -2 1612 167 0 43 chr12 78214059 78214340 -65572115 - AluJo SINE Alu -43 269 1 1778 177 0 3 chr12 78214344 78214632 -65571823 - AluJb SINE Alu -11 301 15 3231 165 30 28 chr12 78215413 78215692 -65570763 + MER73 LTR ERVL 18 295 -349 405 0 0 0 chr12 78215692 78215737 -65570718 + (GA)n Simple_repeat Simple_repeat 2 46 0 3231 165 30 28 chr12 78215737 78216064 -65570391 + MER73 LTR ERVL 295 625 -19 506 221 30 15 chr12 78216462 78216593 -65569862 - MER94 DNA DNA -1 133 1 339 242 74 32 chr12 78218119 78218214 -65568241 - MIR SINE MIR -83 179 81 1444 232 108 42 chr12 78218238 78218762 -65567693 - MLT1E3 LTR MaLR -8 616 73 378 0 0 0 chr12 78218762 78218804 -65567651 + (CA)n Simple_repeat Simple_repeat 1 42 0 1444 232 108 42 chr12 78218804 78218883 -65567572 - MLT1E3 LTR MaLR -551 73 1 278 170 0 0 chr12 78219283 78219336 -65567119 - MLT2A2 LTR ERVL -1 452 400 363 167 0 0 chr12 78219338 78219404 -65567051 + (TCTCTG)n Simple_repeat Simple_repeat 4 69 0 231 114 0 0 chr12 78219405 78219440 -65567015 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 249 280 0 0 chr12 78219470 78219545 -65566910 + (TA)n Simple_repeat Simple_repeat 2 76 0 1935 205 56 81 chr12 78219547 78220068 -65566387 - MLT2B3 LTR ERVL -46 508 1 304 242 273 0 chr12 78220307 78220406 -65566049 + L2 LINE L2 3184 3309 -4 29 28 0 0 chr12 78220573 78220609 -65565846 + AT_rich Low_complexity Low_complexity 1 36 0 262 219 79 128 chr12 78221768 78221932 -65564523 + MIR SINE MIR 63 218 -44 28 0 0 0 chr12 78222250 78222278 -65564177 + AT_rich Low_complexity Low_complexity 1 28 0 1729 192 24 0 chr12 78222761 78223089 -65563366 - MER44D DNA MER2_type 0 609 4 24 67 0 0 chr12 78223314 78223359 -65563096 + AT_rich Low_complexity Low_complexity 1 45 0 189 196 0 0 chr12 78223704 78223755 -65562700 + (TA)n Simple_repeat Simple_repeat 2 52 0 14350 163 29 11 chr12 78223774 78226439 -65560016 + Tigger2 DNA MER2_type 4 2718 0 1789 151 67 22 chr12 78226976 78227334 -65559121 + THE1C LTR MaLR 1 374 -1 2096 122 0 0 chr12 78227569 78227873 -65558582 + AluSc SINE Alu 1 304 0 255 377 16 25 chr12 78227892 78228014 -65558441 + MIR SINE MIR 23 143 -65 1911 183 26 8 chr12 78228294 78228677 -65557778 + MLT1B LTR MaLR 1 390 0 2298 97 3 3 chr12 78228808 78229117 -65557338 + AluSc SINE Alu 1 309 0 183 129 0 0 chr12 78229764 78229795 -65556660 + (A)n Simple_repeat Simple_repeat 1 31 0 209 333 53 61 chr12 78229962 78230076 -65556379 - L2 LINE L2 0 3313 3201 * 216 393 52 0 chr12 78230072 78230207 -65556248 + L2 LINE L2 2876 3017 -296 678 229 119 14 chr12 78230459 78230669 -65555786 + MIR SINE MIR 1 232 -30 523 253 31 6 chr12 78232849 78233011 -65553444 + LTR23 LTR ERV1 272 437 0 21 71 0 0 chr12 78233052 78233094 -65553361 + AT_rich Low_complexity Low_complexity 1 42 0 6281 135 62 43 chr12 78234809 78235280 -65551175 - Tigger3b DNA MER2_type -1802 1226 765 1927 114 27 30 chr12 78235280 78235578 -65550877 - AluSq SINE Alu -16 297 1 6281 135 62 43 chr12 78235578 78235978 -65550477 - Tigger3b DNA MER2_type -2263 765 324 605 169 99 42 chr12 78235978 78236120 -65550335 - FRAM SINE Alu -16 150 1 6281 135 62 43 chr12 78236120 78236451 -65550004 - Tigger3b DNA MER2_type -2704 324 1 1360 181 10 73 chr12 78237386 78237700 -65548755 + AluJo SINE Alu 3 296 -16 208 326 105 0 chr12 78238144 78238239 -65548216 - L2 LINE L2 -36 3236 3132 368 291 74 58 chr12 78238333 78238591 -65547864 - L1MDa LINE L1 -6214 326 65 9583 74 12 59 chr12 78239319 78240774 -65545681 - SVA Other Other 0 1386 1 557 226 49 24 chr12 78240881 78241045 -65545410 + MER3 DNA MER1_type 1 168 -41 1734 163 4 0 chr12 78241062 78241326 -65545129 + AluJb SINE Alu 24 288 -24 444 251 88 14 chr12 78241445 78241608 -65544847 - MLT1I LTR MaLR -7 402 247 29 70 0 0 chr12 78242089 78242146 -65544309 + AT_rich Low_complexity Low_complexity 1 57 0 356 328 23 28 chr12 78242284 78242461 -65543994 - MIR SINE MIR -16 246 71 22 56 0 0 chr12 78243121 78243157 -65543298 + AT_rich Low_complexity Low_complexity 1 36 0 3030 223 71 22 chr12 78244270 78245171 -65541284 - L1ME1 LINE L1 -5 6161 5219 1121 247 57 48 chr12 78245186 78245623 -65540832 + L1M4 LINE L1 4682 5122 -1024 200 328 0 0 chr12 78245662 78245726 -65540729 + MIR SINE MIR 166 229 -33 689 222 0 60 chr12 78246340 78246507 -65539948 - AluSg/x SINE Alu -18 294 138 21 0 0 0 chr12 78248751 78248772 -65537683 + AT_rich Low_complexity Low_complexity 1 21 0 543 359 47 0 chr12 78249372 78249606 -65536849 + MIR SINE MIR 1 245 -17 315 93 0 0 chr12 78250267 78250310 -65536145 + AluSg/x SINE Alu 169 211 -89 780 131 0 16 chr12 78250311 78250433 -65536022 + AluSp/q SINE Alu 177 296 -17 22 0 0 0 chr12 78251015 78251037 -65535418 + AT_rich Low_complexity Low_complexity 1 22 0 321 26 0 0 chr12 78251176 78251214 -65535241 + (TG)n Simple_repeat Simple_repeat 2 39 0 8829 157 9 51 chr12 78251229 78252520 -65533935 + THE1-int LTR MaLR 4 1215 -365 3241 117 2 0 chr12 78252520 78252972 -65533483 - MLT2A2 LTR ERVL 0 453 1 8829 157 9 51 chr12 78252972 78253293 -65533162 + THE1-int LTR MaLR 1215 1548 -32 243 154 0 0 chr12 78253298 78253337 -65533118 - MSTA LTR MaLR -389 39 1 458 322 91 8 chr12 78254427 78254669 -65531786 + MIR SINE MIR 1 262 0 231 276 40 0 chr12 78254736 78254812 -65531643 - MER67D LTR ERV1 -4 510 432 1146 190 225 3 chr12 78254852 78255033 -65531422 - MER67D LTR ERV1 -161 353 213 2729 172 38 6 chr12 78255033 78255534 -65530921 + LTR44 LTR ERV1 3 519 0 1146 190 225 3 chr12 78255534 78255641 -65530814 - MER67D LTR ERV1 -301 213 1 409 322 160 51 chr12 78256553 78257177 -65529278 + L3 LINE CR1 714 1405 -172 208 314 135 32 chr12 78257519 78257675 -65528780 + MIR SINE MIR 20 191 -71 2188 99 3 26 chr12 78258479 78258792 -65527663 + AluSx SINE Alu 1 306 -6 1121 151 63 20 chr12 78258793 78259045 -65527410 + L1MA8 LINE L1 6027 6289 -2 462 291 108 14 chr12 78259274 78259487 -65526968 + MIR SINE MIR 1 233 -29 31 44 0 0 chr12 78259928 78259973 -65526482 + AT_rich Low_complexity Low_complexity 1 45 0 1986 143 0 3 chr12 78260799 78261100 -65525355 - AluJb SINE Alu -8 304 5 279 302 42 21 chr12 78261302 78261398 -65525057 - MER5A DNA MER1_type -1 188 91 23 0 0 0 chr12 78261507 78261530 -65524925 + AT_rich Low_complexity Low_complexity 1 23 0 182 393 47 0 chr12 78261941 78262048 -65524407 + L2 LINE L2 2208 2319 -995 427 292 101 34 chr12 78262463 78262672 -65523783 + MIR SINE MIR 8 230 -32 505 160 0 27 chr12 78266957 78267223 -65519232 + (TA)n Simple_repeat Simple_repeat 1 258 0 447 180 5 26 chr12 78267243 78267674 -65518781 + (TA)n Simple_repeat Simple_repeat 1 421 0 302 207 0 24 chr12 78267688 78267852 -65518603 + (TA)n Simple_repeat Simple_repeat 2 161 0 210 190 7 35 chr12 78267920 78268062 -65518393 + (TA)n Simple_repeat Simple_repeat 1 138 0 407 348 33 26 chr12 78268434 78268618 -65517837 - MIR SINE MIR -62 146 5 236 220 88 0 chr12 78268897 78268988 -65517467 - L1ME4a LINE L1 -2 6119 6021 908 314 23 19 chr12 78269398 78269707 -65516748 + LTR16A LTR ERVL 141 450 0 24 53 0 0 chr12 78270377 78270415 -65516040 + AT_rich Low_complexity Low_complexity 1 38 0 2092 165 107 2 chr12 78270708 78271127 -65515328 + ERVL-B3 LTR ERVL 3690 4152 -1612 * 2408 156 123 9 chr12 78271109 78271750 -65514705 + ERVL-B3 LTR ERVL 4949 5752 -12 1673 249 40 50 chr12 78271757 78272282 -65514173 + MLT2B3 LTR ERVL 3 522 -32 202 189 0 0 chr12 78272741 78272778 -65513677 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 192 40 0 0 chr12 78273264 78273289 -65513166 + (CA)n Simple_repeat Simple_repeat 2 26 0 218 267 17 0 chr12 78274056 78274116 -65512339 + CT-rich Low_complexity Low_complexity 4 64 0 24 67 0 0 chr12 78274377 78274422 -65512033 + AT_rich Low_complexity Low_complexity 1 45 0 4946 219 78 11 chr12 78275015 78276791 -65509664 + L1MC1 LINE L1 4406 6315 -18 1998 156 17 8 chr12 78276798 78277156 -65509299 - MER46B DNA MER2_type 0 236 1 735 277 179 9 chr12 78277169 78277599 -65508856 - Charlie7 DNA MER1_type -626 1986 1484 237 294 29 59 chr12 78277775 78277945 -65508510 - Charlie7 DNA MER1_type -2439 173 9 947 188 65 0 chr12 78277994 78278223 -65508232 - MER33 DNA MER1_type -28 296 53 1812 141 13 0 chr12 78278268 78278567 -65507888 + L1MB1 LINE L1 5861 6163 -5 351 123 15 0 chr12 78278571 78278636 -65507819 - L1PA16 LINE L1 -2 6164 6099 556 139 0 0 chr12 78278636 78278722 -65507733 - AluY SINE Alu -21 290 205 10181 221 20 59 chr12 78278722 78279612 -65506843 - L1PA15 LINE L1 -53 6763 5840 180 0 0 0 chr12 78279612 78279632 -65506823 + (TTG)n Simple_repeat Simple_repeat 2 21 0 10181 221 20 59 chr12 78279632 78280849 -65505606 - L1PA15 LINE L1 -976 5840 4577 10907 94 2 1 chr12 78280849 78283165 -65503290 - L1PA7 LINE L1 0 6154 3834 10181 221 20 59 chr12 78283165 78286744 -65499711 - L1PA15 LINE L1 -2239 4577 1289 350 113 0 16 chr12 78286840 78286902 -65499553 + (TCTCC)n Simple_repeat Simple_repeat 2 62 0 2217 92 7 3 chr12 78286911 78287205 -65499250 - AluSg SINE Alu -13 297 3 826 161 15 0 chr12 78287790 78287927 -65498528 - AluSg/x SINE Alu -3 309 171 476 105 13 0 chr12 78288612 78288688 -65497767 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 5396 166 27 23 chr12 78289010 78290731 -65495724 + L1MA8 LINE L1 4295 6033 -258 2161 116 0 10 chr12 78290731 78291033 -65495422 - AluSx SINE Alu -11 301 3 5396 166 27 23 chr12 78291033 78291287 -65495168 + L1MA8 LINE L1 6033 6285 -6 1060 113 13 7 chr12 78292238 78292389 -65494066 + AluSg SINE Alu 1 152 -158 255 247 49 0 chr12 78292597 78292678 -65493777 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 300 27 0 0 chr12 78292929 78292966 -65493489 + (GA)n Simple_repeat Simple_repeat 2 38 0 861 270 127 8 chr12 78293092 78293344 -65493111 + MER69 DNA AcHobo 2 283 -2243 347 221 67 10 chr12 78293332 78293436 -65493019 + MER69 DNA AcHobo 1452 1561 -965 * 1133 293 44 42 chr12 78293436 78293870 -65492585 + L1PA13 LINE L1 1021 1455 -5332 231 223 85 112 chr12 78294195 78294419 -65492036 - L1MDa LINE L1 -4604 1525 1308 378 298 72 38 chr12 78294461 78294696 -65491759 - L1MDa LINE L1 -4862 1257 1015 1465 253 41 12 chr12 78294777 78295294 -65491161 - L1MCa LINE L1 -2587 3839 3308 1058 225 63 27 chr12 78295306 78295333 -65491122 - L1MCa LINE L1 -3623 2803 2778 1937 159 0 0 chr12 78295333 78295635 -65490820 - AluSg SINE Alu -6 304 3 1058 225 63 27 chr12 78295635 78296251 -65490204 - L1MCa LINE L1 -3648 2778 2143 488 299 86 65 chr12 78296266 78296650 -65489805 + L2 LINE L2 2125 2516 -798 320 326 76 14 chr12 78296644 78296788 -65489667 + L2 LINE L2 2921 3073 -240 * 28 86 0 0 chr12 78297039 78297109 -65489346 + AT_rich Low_complexity Low_complexity 1 70 0 252 277 0 60 chr12 78297138 78297221 -65489234 - L2 LINE L2 -32 3281 3204 595 225 53 0 chr12 78297222 78297373 -65489082 - L2 LINE L2 -1251 2063 1905 255 276 60 17 chr12 78297487 78297503 -65488952 + MIR SINE MIR 133 147 -115 1742 146 3 44 chr12 78297503 78297829 -65488626 + AluSx SINE Alu 1 314 0 255 276 60 17 chr12 78297829 78297925 -65488530 + MIR SINE MIR 147 253 -9 22 0 0 0 chr12 78297976 78297998 -65488457 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 78299687 78299716 -65486739 + AT_rich Low_complexity Low_complexity 1 29 0 2478 227 13 46 chr12 78300219 78300893 -65485562 - MER82 DNA MER2_type 0 653 2 253 326 8 70 chr12 78303427 78303556 -65482899 + L2 LINE L2 3193 3313 0 309 235 12 12 chr12 78303579 78303660 -65482795 + MLT1F1 LTR MaLR 45 125 -442 1066 218 0 45 chr12 78303667 78303933 -65482522 + L1MC3 LINE L1 7199 7452 -333 * 4805 201 19 30 chr12 78303926 78304770 -65481685 - L1 LINE L1 -746 5400 4548 2386 95 35 17 chr12 78304770 78305117 -65481338 - THE1A LTR MaLR -2 353 1 10698 109 25 1 chr12 78305117 78306660 -65479795 - THE1A-int LTR MaLR 0 1580 1 2188 94 62 20 chr12 78306660 78307001 -65479454 - THE1A LTR MaLR 0 355 1 4805 201 19 30 chr12 78307001 78307342 -65479113 - L1 LINE L1 -1595 4551 4226 1593 94 66 0 chr12 78307342 78307586 -65478869 + L1PA13 LINE L1 5902 6161 -2 25 0 0 0 chr12 78307592 78307617 -65478838 + AT_rich Low_complexity Low_complexity 1 25 0 2362 145 44 65 chr12 78307630 78308299 -65478156 + L1MB1 LINE L1 5366 5950 -230 24 32 0 0 chr12 78308454 78308485 -65477970 + AT_rich Low_complexity Low_complexity 1 31 0 322 202 61 50 chr12 78308737 78308836 -65477619 + L1MB1 LINE L1 6067 6166 -23 1767 146 48 58 chr12 78309622 78310019 -65476436 + L1MA10 LINE L1 5935 6327 -7 1141 184 65 18 chr12 78310051 78310329 -65476126 + L1MC3 LINE L1 7495 7785 0 195 42 0 0 chr12 78310902 78310926 -65475529 + (T)n Simple_repeat Simple_repeat 1 24 0 762 98 35 56 chr12 78310974 78311117 -65475338 - L1MC3 LINE L1 -7 7778 7639 322 156 78 0 chr12 78311160 78311224 -65475231 - L1MC3 LINE L1 -525 7260 7192 240 266 43 11 chr12 78311224 78311318 -65475137 - MLT1F1 LTR MaLR -436 131 35 1249 158 27 57 chr12 78311319 78311616 -65474839 - L1MC3 LINE L1 -689 7096 6809 22 35 0 0 chr12 78311678 78311707 -65474748 + AT_rich Low_complexity Low_complexity 1 29 0 357 253 12 62 chr12 78313024 78313186 -65473269 + MLT1K LTR MaLR 372 525 -63 219 297 109 30 chr12 78313217 78313318 -65473137 + MIR SINE MIR 7 115 -147 23 68 0 0 chr12 78313762 78313806 -65472649 + AT_rich Low_complexity Low_complexity 1 44 0 528 288 38 38 chr12 78314165 78314432 -65472023 - L1MC4a LINE L1 -1874 5934 5668 21 36 0 0 chr12 78314612 78314640 -65471815 + AT_rich Low_complexity Low_complexity 1 28 0 186 335 148 23 chr12 78314640 78314816 -65471639 - MIR SINE MIR 0 262 65 233 240 130 30 chr12 78314865 78314965 -65471490 - MLT1J2 LTR MaLR -2 448 339 1166 111 5 0 chr12 78315074 78315294 -65471161 + (TTTC)n Simple_repeat Simple_repeat 1 221 0 223 256 205 8 chr12 78316114 78316179 -65470276 - MIR SINE MIR -1 261 210 6687 159 30 2 chr12 78316179 78317377 -65469078 - Tigger3b DNA MER2_type 0 1231 1 223 256 205 8 chr12 78317377 78317428 -65469027 - MIR SINE MIR -52 210 122 1911 113 32 35 chr12 78318779 78319090 -65467365 + AluSx SINE Alu 1 310 -2 25 65 0 0 chr12 78320207 78320253 -65466202 + AT_rich Low_complexity Low_complexity 1 46 0 287 419 69 24 chr12 78321258 78321592 -65464863 - L2 LINE L2 -9 3263 2915 324 0 0 0 chr12 78322215 78322251 -65464204 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 327 25 0 0 chr12 78322250 78322290 -65464165 + (GA)n Simple_repeat Simple_repeat 1 40 0 1833 143 35 35 chr12 78322290 78322662 -65463793 + THE1C LTR MaLR 4 375 0 997 165 12 0 chr12 78323385 78323549 -65462906 + Tigger1 DNA MER2_type 1 166 -2252 * 5057 152 32 19 chr12 78323546 78324261 -65462194 + Tigger1 DNA MER2_type 1511 2242 -176 1807 152 20 20 chr12 78324261 78324557 -65461898 + AluSx SINE Alu 1 296 -16 5057 152 32 19 chr12 78324557 78324736 -65461719 + Tigger1 DNA MER2_type 2242 2417 -1 742 21 21 0 chr12 78324759 78324855 -65461600 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 8476 99 3 0 chr12 78324965 78326198 -65460257 + L1P LINE L1 2347 3583 -2563 353 220 0 0 chr12 78326298 78326357 -65460098 - AluJ/FLAM SINE Alu -235 67 9 1827 236 102 57 chr12 78326392 78326482 -65459973 - MER77 LTR ERV1 0 605 521 5971 39 15 1 chr12 78326482 78327218 -65459237 + L1PA4 LINE L1 5407 6152 -3 1827 236 102 57 chr12 78327218 78327703 -65458752 - MER77 LTR ERV1 -84 521 4 366 241 11 0 chr12 78327703 78327790 -65458665 - L1MC4 LINE L1 -370 7672 7585 633 276 164 41 chr12 78327912 78328350 -65458105 + MLT1H1 LTR MaLR 64 555 0 550 111 0 0 chr12 78328471 78328552 -65457903 + AluY SINE Alu 1 81 -229 10739 155 39 57 chr12 78328653 78330894 -65455561 - L1P LINE L1 -3358 2788 589 1174 88 69 0 chr12 78331019 78331179 -65455276 + AluY SINE Alu 126 296 -15 32 0 0 0 chr12 78331645 78331677 -65454778 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr12 78331975 78331998 -65454457 + AT_rich Low_complexity Low_complexity 1 23 0 2187 105 7 0 chr12 78332273 78332568 -65453887 + AluSx SINE Alu 1 297 -15 468 51 0 0 chr12 78332574 78332633 -65453822 + (TA)n Simple_repeat Simple_repeat 2 60 0 286 315 18 24 chr12 78332646 78332811 -65453644 + L1MEd LINE L1 963 1126 -4993 679 196 183 5 chr12 78332987 78333204 -65453251 - MER39 LTR ERV1 -302 405 1 242 203 0 16 chr12 78333678 78333742 -65452713 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 1824 114 84 39 chr12 78333876 78334235 -65452220 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr12 78334355 78334391 -65452064 + AT_rich Low_complexity Low_complexity 1 36 0 799 264 0 6 chr12 78334619 78334797 -65451658 - MER5B DNA MER1_type 0 178 2 804 244 124 86 chr12 78335186 78335686 -65450769 - MLT1H1 LTR MaLR 0 555 37 2054 108 0 7 chr12 78336961 78337272 -65449183 - AluSq SINE Alu 0 309 1 381 326 91 29 chr12 78337272 78337612 -65448843 - L1M4 LINE L1 -1089 5057 4697 531 310 97 71 chr12 78337624 78338241 -65448214 - L1M4 LINE L1 -2503 3643 3011 21 36 0 0 chr12 78338300 78338328 -65448127 + AT_rich Low_complexity Low_complexity 1 28 0 216 135 0 0 chr12 78338520 78338557 -65447898 + (CA)n Simple_repeat Simple_repeat 2 38 0 314 313 9 36 chr12 78338594 78338754 -65447701 + MIR SINE MIR 36 189 -63 268 239 11 45 chr12 78339491 78339579 -65446876 - MIR SINE MIR -29 233 149 1219 123 90 0 chr12 78339856 78340067 -65446388 - MER30 DNA MER1_type 0 230 1 881 257 43 0 chr12 78340839 78341096 -65445359 - L1MC4 LINE L1 0 8042 7775 369 0 0 0 chr12 78341221 78341262 -65445193 + (TA)n Simple_repeat Simple_repeat 1 41 0 706 191 46 0 chr12 78341279 78341410 -65445045 + Tigger1 DNA MER2_type 2281 2417 -1 287 320 13 13 chr12 78342232 78342310 -65444145 - LTR67 LTR ERVL -369 188 111 335 236 110 31 chr12 78342416 78342543 -65443912 + MER117 DNA MER1_type 28 164 -33 31 26 0 0 chr12 78343178 78343216 -65443239 + AT_rich Low_complexity Low_complexity 1 38 0 2019 203 16 23 chr12 78343773 78344212 -65442243 + L1MB1 LINE L1 5669 6104 -85 2492 119 3 23 chr12 78344221 78344608 -65441847 + L1P3 LINE L1 8 386 -6075 707 247 62 35 chr12 78345564 78345791 -65440664 + MIR SINE MIR 9 241 -21 230 284 68 40 chr12 78345847 78345921 -65440534 + L2 LINE L2 3196 3271 -1 24 67 0 0 chr12 78346292 78346337 -65440118 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 78346408 78346431 -65440024 + AT_rich Low_complexity Low_complexity 1 23 0 2229 77 0 3 chr12 78346799 78347115 -65439340 + AluY SINE Alu 1 315 0 21 71 0 0 chr12 78347200 78347242 -65439213 + AT_rich Low_complexity Low_complexity 1 42 0 521 177 113 87 chr12 78347437 78347704 -65438751 - MER110A LTR ERV1 0 491 235 288 303 85 38 chr12 78349040 78349209 -65437246 - MER5A DNA MER1_type 0 189 3 1025 64 14 0 chr12 78351218 78351359 -65435096 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 1666 156 0 22 chr12 78351359 78351635 -65434820 - AluJb SINE Alu -38 274 5 204 211 11 53 chr12 78351847 78351942 -65434513 + A-rich Low_complexity Low_complexity 2 92 0 622 235 83 122 chr12 78352037 78352497 -65433958 + MER110A LTR ERV1 1 442 -26 2006 220 59 31 chr12 78353430 78354231 -65432224 + L1MDb LINE L1 917 1675 -4865 1357 44 0 16 chr12 78354277 78354460 -65431995 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1979 102 28 7 chr12 78354477 78354760 -65431695 - AluSc SINE Alu -17 292 4 841 177 23 40 chr12 78354782 78354957 -65431498 - FAM SINE Alu 0 175 4 1254 254 84 25 chr12 78354961 78355348 -65431107 + L1MDb LINE L1 1923 2286 -4254 1908 185 26 16 chr12 78355348 78355731 -65430724 + MLT1B LTR MaLR 4 390 0 1254 254 84 25 chr12 78355731 78355763 -65430692 + L1MDb LINE L1 2286 2315 -4225 180 0 0 0 chr12 78355763 78355783 -65430672 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 254 84 25 chr12 78355783 78356398 -65430057 + L1MDb LINE L1 2315 3025 -3515 425 158 13 0 chr12 78356400 78356476 -65429979 + MER31A LTR ERV1 400 476 -9 282 56 0 0 chr12 78356965 78357001 -65429454 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr12 78357537 78357589 -65428866 + AT_rich Low_complexity Low_complexity 1 52 0 260 253 44 22 chr12 78358298 78358389 -65428066 + MER90 LTR ERV1 257 349 -265 309 306 96 6 chr12 78358703 78358860 -65427595 - MIR SINE MIR -30 232 62 260 306 59 0 chr12 78359181 78359266 -65427189 - L2 LINE L2 0 3313 3224 1986 143 0 3 chr12 78360308 78360609 -65425846 - AluJb SINE Alu -8 304 5 289 302 42 21 chr12 78360811 78360907 -65425548 - MER5A DNA MER1_type -1 188 91 23 0 0 0 chr12 78361016 78361039 -65425416 + AT_rich Low_complexity Low_complexity 1 23 0 182 393 47 0 chr12 78361450 78361557 -65424898 + L2 LINE L2 2208 2319 -995 427 292 101 34 chr12 78361972 78362181 -65424274 + MIR SINE MIR 8 230 -32 427 172 0 30 chr12 78366467 78366636 -65419819 + (TA)n Simple_repeat Simple_repeat 2 165 0 306 244 35 35 chr12 78366641 78366727 -65419728 - L1MC4 LINE L1 -1337 6705 6620 334 177 7 27 chr12 78366734 78367041 -65419414 + (TA)n Simple_repeat Simple_repeat 1 300 0 303 198 111 12 chr12 78367048 78367129 -65419326 - L1MC4 LINE L1 -1341 6701 6613 406 197 0 34 chr12 78367136 78367950 -65418505 + (TA)n Simple_repeat Simple_repeat 1 786 0 237 176 20 0 chr12 78367957 78368008 -65418447 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 407 196 2 34 chr12 78368016 78368501 -65417954 + (TA)n Simple_repeat Simple_repeat 1 469 0 407 348 33 26 chr12 78368874 78369058 -65417397 - MIR SINE MIR -62 146 5 236 220 88 0 chr12 78369337 78369428 -65417027 - L1ME4a LINE L1 -2 6119 6021 924 311 23 19 chr12 78369837 78370146 -65416309 + LTR16A LTR ERVL 141 450 0 510 304 84 46 chr12 78371710 78372055 -65414400 + L3 LINE CR1 1024 1381 -196 728 189 8 0 chr12 78372754 78372886 -65413569 + FLAM_A SINE Alu 1 133 0 23 97 0 0 chr12 78373353 78373425 -65413030 + AT_rich Low_complexity Low_complexity 1 72 0 1458 33 6 0 chr12 78374034 78374214 -65412241 - L1PA3 LINE L1 -241 5914 5734 21 0 0 0 chr12 78374218 78374239 -65412216 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 78374499 78374525 -65411930 + AT_rich Low_complexity Low_complexity 1 26 0 1969 162 7 0 chr12 78374839 78375148 -65411307 + AluSx SINE Alu 1 311 -1 33 0 0 0 chr12 78376281 78376314 -65410141 + AT_rich Low_complexity Low_complexity 1 33 0 4697 187 28 14 chr12 78376419 78377550 -65408905 - L1MA8 LINE L1 -12 6279 5129 490 302 139 36 chr12 78378493 78378745 -65407710 - L2 LINE L2 -15 3298 3021 32 0 0 0 chr12 78378803 78378835 -65407620 + AT_rich Low_complexity Low_complexity 1 32 0 249 111 22 0 chr12 78379120 78379165 -65407290 + MADE1 DNA Mariner 1 46 -34 323 320 16 24 chr12 78379337 78379462 -65406993 - L2 LINE L2 0 3313 3190 804 319 87 41 chr12 78381873 78382457 -65403998 + L2 LINE L2 2247 2857 -457 24 67 0 0 chr12 78382577 78382622 -65403833 + AT_rich Low_complexity Low_complexity 1 45 0 193 360 13 0 chr12 78382812 78382887 -65403568 + L2 LINE L2 2966 3041 -231 1612 103 8 16 chr12 78383008 78383260 -65403195 - L1PB2 LINE L1 0 6151 5902 216 214 0 54 chr12 78383360 78383416 -65403039 + L2 LINE L2 3261 3313 0 29 98 0 0 chr12 78383541 78383633 -65402822 + AT_rich Low_complexity Low_complexity 1 92 0 11711 102 5 1 chr12 78384536 78387010 -65399445 + L1PA7 LINE L1 3660 6148 -6 265 204 32 75 chr12 78387010 78387103 -65399352 + L1MB1 LINE L1 6098 6186 -3 1198 155 98 0 chr12 78389453 78389718 -65396737 - MER33 DNA MER1_type 0 324 34 2626 200 12 4 chr12 78389718 78390219 -65396236 - LTR10B LTR ERV1 0 505 1 337 216 41 31 chr12 78390842 78390939 -65395516 - L2 LINE L2 -43 3270 3173 217 204 23 0 chr12 78391277 78391321 -65395134 + MIR3 SINE MIR 164 208 0 7516 94 4 21 chr12 78392072 78393162 -65393293 - MER11C LTR ERVK 0 1071 1 22 0 0 0 chr12 78394060 78394082 -65392373 + AT_rich Low_complexity Low_complexity 1 22 0 276 277 43 11 chr12 78394467 78394561 -65391894 - MIR SINE MIR -58 150 54 1587 199 50 70 chr12 78395391 78395962 -65390493 - MER67C LTR ERV1 -3 511 1 25 31 0 0 chr12 78396418 78396450 -65390005 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 78396504 78396530 -65389925 + AT_rich Low_complexity Low_complexity 1 26 0 472 254 76 38 chr12 78396689 78396874 -65389581 - HAL1 LINE L1 -1588 919 728 2582 115 0 3 chr12 78397519 78397884 -65388571 + THE1B LTR MaLR 1 364 0 391 317 14 58 chr12 78397971 78398179 -65388276 - L1ME3A LINE L1 -289 5881 5683 233 264 44 55 chr12 78398313 78398404 -65388051 - L1P5 LINE L1 -590 5561 5472 2009 127 3 0 chr12 78398412 78398704 -65387751 - AluSx SINE Alu -16 296 4 1272 128 52 98 chr12 78399084 78399390 -65387065 + L1MA8 LINE L1 5998 6289 -2 268 283 108 48 chr12 78399958 78400124 -65386331 + LTR33A LTR ERVL 330 505 -18 407 286 8 8 chr12 78400161 78400280 -65386175 - MIR SINE MIR -58 204 86 21 0 0 0 chr12 78400566 78400587 -65385868 + AT_rich Low_complexity Low_complexity 1 21 0 1686 151 39 24 chr12 78400593 78400925 -65385530 - L1PB3 LINE L1 -10 6144 5808 4675 255 47 17 chr12 78401757 78403323 -65383132 - L1 LINE L1 -1315 4831 3219 2353 183 0 19 chr12 78403329 78403755 -65382700 - MER47B DNA MER2_type 0 418 1 376 295 86 0 chr12 78403787 78403926 -65382529 - Charlie2 DNA MER1_type -2418 444 294 1247 240 53 42 chr12 78404062 78404691 -65381764 - L1ME3A LINE L1 -449 5713 5089 31 68 0 0 chr12 78404761 78404820 -65381635 + AT_rich Low_complexity Low_complexity 1 59 0 898 219 31 0 chr12 78404828 78405024 -65381431 + MER3 DNA MER1_type 2 203 -6 436 299 29 7 chr12 78405100 78405237 -65381218 - MIR SINE MIR -113 149 10 2180 64 0 0 chr12 78405239 78405505 -65380950 + AluY SINE Alu 1 266 -45 2063 95 3 11 chr12 78405505 78405788 -65380667 + AluSx SINE Alu 27 307 -5 1551 75 19 0 chr12 78407186 78407398 -65379057 - L1PA7 LINE L1 -2 6152 5937 2634 139 25 0 chr12 78407398 78407833 -65378622 - L1PA15 LINE L1 -4 6161 5712 897 298 72 30 chr12 78409997 78410338 -65376117 + L2 LINE L2 2232 2592 -722 2159 116 0 3 chr12 78410338 78410639 -65375816 - AluSc SINE Alu -9 300 1 897 298 72 30 chr12 78410639 78410670 -65375785 + L2 LINE L2 2592 2620 -694 4933 44 12 2 chr12 78410672 78411308 -65375147 - L1M LINE L1 -816 5330 4701 7042 30 4 0 chr12 78411308 78412144 -65374311 + L1PA4 LINE L1 5315 6154 -1 4933 44 12 2 chr12 78412144 78412155 -65374300 - L1M LINE L1 -1445 4701 4692 545 262 70 29 chr12 78412156 78412328 -65374127 + L2 LINE L2 2636 2814 -500 1343 169 14 78 chr12 78412354 78412698 -65373757 + L1MA7 LINE L1 5945 6266 -25 338 237 52 0 chr12 78412728 78412863 -65373592 + MER96B DNA MER1_type? 52 193 -224 227 218 39 13 chr12 78413008 78413086 -65373369 + (TA)n Simple_repeat Simple_repeat 1 80 0 13583 148 30 32 chr12 78413102 78415503 -65370952 + Tigger1 DNA MER2_type 24 2418 0 380 264 0 8 chr12 78415666 78415787 -65370668 + (TA)n Simple_repeat Simple_repeat 2 121 0 6249 155 36 18 chr12 78415867 78417076 -65369379 + Tigger3b DNA MER2_type 1 1230 -1 327 49 0 0 chr12 78417398 78417439 -65369016 + (TG)n Simple_repeat Simple_repeat 2 42 0 3990 193 44 1 chr12 78417553 78418329 -65368126 - L1MB5 LINE L1 -9 6165 5357 22 0 0 0 chr12 78418343 78418365 -65368090 + AT_rich Low_complexity Low_complexity 1 22 0 5259 108 18 4 chr12 78418401 78419194 -65367261 - L1PB1 LINE L1 -5 6862 6059 1134 126 11 0 chr12 78419196 78419371 -65367084 + AluY SINE Alu 135 311 0 13388 220 7 12 chr12 78419379 78419536 -65366919 - L1PB1 LINE L1 -796 6066 5910 234 0 0 0 chr12 78419536 78419562 -65366893 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 13388 220 7 12 chr12 78419562 78422710 -65363745 - L1PB1 LINE L1 -952 5910 2778 330 290 170 41 chr12 78423247 78423505 -65362950 + MLT1J2 LTR MaLR 27 323 -123 2076 175 26 42 chr12 78423609 78424061 -65362394 + MER65A LTR ERV1 1 445 0 21 0 0 0 chr12 78427550 78427571 -65358884 + AT_rich Low_complexity Low_complexity 1 21 0 200 254 56 42 chr12 78427590 78427661 -65358794 - L2 LINE L2 -33 3280 3209 375 78 0 0 chr12 78427699 78427750 -65358705 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5278 178 17 50 chr12 78428695 78430398 -65356057 + L1MA9 LINE L1 4641 6312 0 393 283 38 27 chr12 78430926 78431110 -65355345 + L1M4 LINE L1 3370 3555 -2591 309 277 0 12 chr12 78431913 78431996 -65354459 - Charlie8 DNA MER1_type -2197 220 139 256 253 72 0 chr12 78432102 78432185 -65354270 - HAL1b LINE L1 -882 466 378 32 0 0 0 chr12 78433574 78433606 -65352849 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr12 78433906 78433948 -65352507 + AT_rich Low_complexity Low_complexity 1 42 0 291 114 0 0 chr12 78434236 78434280 -65352175 + (TA)n Simple_repeat Simple_repeat 1 44 0 255 79 0 0 chr12 78434280 78434318 -65352137 + (CA)n Simple_repeat Simple_repeat 1 38 0 232 174 0 0 chr12 78434319 78434365 -65352090 - LTR66 LTR ERVL -171 439 394 297 0 0 0 chr12 78434365 78434398 -65352057 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 342 0 0 0 chr12 78434397 78434435 -65352020 + (TA)n Simple_repeat Simple_repeat 2 39 0 307 267 0 10 chr12 78434435 78434450 -65352005 - L1MA4A LINE L1 -15 6288 6274 4285 175 32 8 chr12 78434450 78435272 -65351183 - L1PB4 LINE L1 -12 6144 5304 23 33 0 0 chr12 78435280 78435310 -65351145 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr12 78437891 78437929 -65348526 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 78438090 78438111 -65348344 + AT_rich Low_complexity Low_complexity 1 21 0 1771 143 15 0 chr12 78438193 78438465 -65347990 + AluSx SINE Alu 35 310 -2 686 206 0 6 chr12 78438470 78438630 -65347825 + GA-rich Low_complexity Low_complexity 4 162 0 1578 183 3 0 chr12 78438644 78438967 -65347488 + AluJb SINE Alu 1 324 0 316 223 68 58 chr12 78439800 78439903 -65346552 + MIR SINE MIR 159 262 0 24 67 0 0 chr12 78440882 78440927 -65345528 + AT_rich Low_complexity Low_complexity 1 45 0 504 314 37 21 chr12 78441387 78441575 -65344880 - MIR SINE MIR -48 214 24 1706 221 65 68 chr12 78442721 78443136 -65343319 - MLT1D LTR MaLR -16 489 74 1870 227 54 49 chr12 78443136 78443687 -65342768 + MLT2B3 LTR ERVL 1 554 0 1706 221 65 68 chr12 78443687 78443760 -65342695 - MLT1D LTR MaLR -431 74 2 46 62 0 0 chr12 78445408 78445489 -65340966 + AT_rich Low_complexity Low_complexity 1 81 0 21 36 0 0 chr12 78445497 78445525 -65340930 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 78445628 78445658 -65340797 + AT_rich Low_complexity Low_complexity 1 30 0 393 103 17 0 chr12 78445663 78445721 -65340734 + AluSq/x SINE Alu 68 126 -176 183 273 0 0 chr12 78445956 78446000 -65340455 + MIR SINE MIR 218 261 -1 2817 21 0 3 chr12 78446042 78446372 -65340083 - L1PA3 LINE L1 0 6155 5827 233 292 62 81 chr12 78446718 78446879 -65339576 + MLT1J LTR MaLR 218 375 -136 22 0 0 0 chr12 78446885 78446907 -65339548 + AT_rich Low_complexity Low_complexity 1 22 0 806 288 0 5 chr12 78447237 78447428 -65339027 + MLT1H1 LTR MaLR 51 240 -315 994 236 63 36 chr12 78447965 78448299 -65338156 - MER2 DNA MER2_type 0 344 2 22 88 0 0 chr12 78448394 78448451 -65338004 + AT_rich Low_complexity Low_complexity 1 57 0 1748 136 77 0 chr12 78449168 78449440 -65337015 + AluSq SINE Alu 1 293 -20 1427 195 20 17 chr12 78449995 78450326 -65336129 + AluJo SINE Alu 6 312 0 21 0 0 0 chr12 78450432 78450453 -65336002 + AT_rich Low_complexity Low_complexity 1 21 0 450 333 64 17 chr12 78450818 78451286 -65335169 + L1M4 LINE L1 3348 3837 -2309 9865 197 15 18 chr12 78451292 78451744 -65334711 - L1P LINE L1 -1933 4213 3761 1943 142 0 13 chr12 78451744 78452054 -65334401 - AluSx SINE Alu -6 306 1 9865 197 15 18 chr12 78452054 78453776 -65332679 - L1P LINE L1 -2385 3761 2047 5360 207 2 12 chr12 78453784 78455751 -65330704 + L1PA14 LINE L1 4190 6160 -1 28 86 0 0 chr12 78455754 78455824 -65330631 + AT_rich Low_complexity Low_complexity 1 70 0 362 254 12 65 chr12 78455865 78455991 -65330464 - L1ME LINE L1 -469 5693 5571 940 87 7 7 chr12 78456112 78456123 -65330332 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 940 87 7 7 chr12 78456123 78456273 -65330182 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 536 267 7 147 chr12 78456826 78457118 -65329337 + MIR SINE MIR 1 251 -11 10984 113 3 9 chr12 78457967 78458363 -65328092 + THE1B-int LTR MaLR 31 428 -1152 2016 159 0 0 chr12 78458363 78458672 -65327783 - AluSx SINE Alu -3 309 1 10984 113 3 9 chr12 78458672 78459835 -65326620 + THE1B-int LTR MaLR 428 1580 0 1971 151 42 22 chr12 78459835 78460192 -65326263 + THE1B LTR MaLR 1 364 0 1103 249 84 3 chr12 78460202 78460511 -65325944 - MLT1C LTR MaLR -128 339 6 1814 212 25 11 chr12 78460515 78460949 -65325506 + L1MB7 LINE L1 5736 6175 -9 23 0 0 0 chr12 78461219 78461242 -65325213 + AT_rich Low_complexity Low_complexity 1 23 0 234 308 31 31 chr12 78461278 78461408 -65325047 - L1ME LINE L1 -1114 5032 4903 256 196 103 21 chr12 78461642 78461766 -65324689 + (TGAA)n Simple_repeat Simple_repeat 1 134 0 1266 39 0 0 chr12 78462264 78462419 -65324036 + L1PA4 LINE L1 5996 6150 -5 2374 89 0 0 chr12 78462499 78462803 -65323652 - AluY SINE Alu -4 307 4 2211 63 0 0 chr12 78462951 78463222 -65323233 - AluY SINE Alu -37 274 4 24 0 0 0 chr12 78463527 78463551 -65322904 + AT_rich Low_complexity Low_complexity 1 24 0 1518 175 7 7 chr12 78464530 78464810 -65321645 + L1PB4 LINE L1 5877 6156 0 21 36 0 0 chr12 78464867 78464895 -65321560 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr12 78464944 78464986 -65321469 + AT_rich Low_complexity Low_complexity 1 42 0 262 315 87 27 chr12 78464986 78465135 -65321320 - MIR SINE MIR -13 249 92 389 330 37 28 chr12 78465980 78466198 -65320257 + L3b LINE CR1 1126 1345 -238 207 220 0 0 chr12 78466280 78466330 -65320125 + (TA)n Simple_repeat Simple_repeat 1 50 0 27 29 0 0 chr12 78466785 78466819 -65319636 + AT_rich Low_complexity Low_complexity 1 34 0 244 260 10 73 chr12 78466844 78466940 -65319515 + MIR SINE MIR 109 198 -64 204 40 0 0 chr12 78467085 78467110 -65319345 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr12 78467740 78467776 -65318679 + AT_rich Low_complexity Low_complexity 1 36 0 27 87 0 0 chr12 78467875 78467944 -65318511 + AT_rich Low_complexity Low_complexity 1 69 0 434 305 78 13 chr12 78468625 78468779 -65317676 - MLT1J2 LTR MaLR -5 445 282 272 261 15 0 chr12 78468842 78468907 -65317548 - MLT1J1 LTR MaLR -286 160 95 309 89 0 0 chr12 78468998 78469043 -65317412 + (GA)n Simple_repeat Simple_repeat 1 45 0 188 329 51 25 chr12 78470962 78471041 -65315414 + MER5A DNA MER1_type 104 184 -5 549 267 48 38 chr12 78471242 78471452 -65315003 - MIR SINE MIR -2 260 49 954 251 53 87 chr12 78472269 78472811 -65313644 - L1ME3A LINE L1 -6 6164 5641 263 266 112 70 chr12 78472850 78473091 -65313364 - L1ME3A LINE L1 -620 5546 5296 730 169 23 0 chr12 78473570 78473700 -65312755 - AluSq/x SINE Alu -180 133 1 1426 289 78 48 chr12 78473704 78475000 -65311455 - L1ME3A LINE L1 -1978 4168 2826 1991 364 30 12 chr12 78475000 78475641 -65310814 - MER82 DNA MER2_type -1 652 1 1426 289 78 48 chr12 78475641 78475750 -65310705 - L1ME3A LINE L1 -3320 2826 2722 33 109 0 0 chr12 78476222 78476360 -65310095 + AT_rich Low_complexity Low_complexity 1 138 0 515 320 56 76 chr12 78477083 78477492 -65308963 - L2 LINE L2 -1624 1690 1290 5472 167 31 11 chr12 78477753 78478477 -65307978 - L1MA4A LINE L1 -7 7715 7007 2669 98 3 11 chr12 78478477 78478854 -65307601 - THE1C LTR MaLR 0 375 2 5472 167 31 11 chr12 78478854 78479599 -65306856 - L1MA4A LINE L1 -715 7007 6215 554 177 88 0 chr12 78479599 78479646 -65306809 - MLT2A2 LTR ERVL 0 453 412 254 28 0 28 chr12 78479646 78479682 -65306773 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 554 177 88 0 chr12 78479682 78479747 -65306708 - MLT2A2 LTR ERVL -41 412 331 755 198 13 5 chr12 78479747 78479951 -65306504 - L1MA4A LINE L1 -3854 3711 3506 * 5057 211 32 61 chr12 78479950 78481244 -65305211 - L1MA4A LINE L1 -4464 3102 1847 369 62 0 0 chr12 78481290 78481338 -65305117 + (TA)n Simple_repeat Simple_repeat 2 49 0 2148 113 0 0 chr12 78481338 78481621 -65304834 - AluSx SINE Alu -24 288 6 969 249 44 28 chr12 78483916 78484513 -65301942 - L1ME LINE L1 -591 5571 4965 280 277 82 31 chr12 78485259 78485418 -65301037 + L1MC/D LINE L1 5359 5525 -2283 668 97 10 0 chr12 78485579 78485682 -65300773 + L1PA13 LINE L1 6060 6163 0 2263 86 3 25 chr12 78486181 78486351 -65300104 - AluSq SINE Alu -6 307 146 225 0 0 0 chr12 78486351 78486376 -65300079 + (TA)n Simple_repeat Simple_repeat 1 25 0 2263 86 3 25 chr12 78486376 78486519 -65299936 - AluSq SINE Alu -167 146 1 389 215 37 19 chr12 78486748 78486855 -65299600 + MER4A LTR ERV1 9 117 -547 509 165 8 210 chr12 78486934 78487201 -65299254 + LTR34 LTR ERV1 136 459 -240 830 216 50 29 chr12 78487201 78487509 -65298946 + MER4C LTR ERV1 282 465 0 21 0 0 0 chr12 78487591 78487612 -65298843 + AT_rich Low_complexity Low_complexity 1 21 0 2468 125 46 96 chr12 78487612 78488004 -65298451 - L1PB4 LINE L1 -3 6153 5792 1799 177 3 3 chr12 78488004 78488315 -65298140 - AluJb SINE Alu -1 311 1 2468 125 46 96 chr12 78488315 78488443 -65298012 - L1PB4 LINE L1 -364 5792 5659 * 3007 150 15 29 chr12 78488420 78489194 -65297261 - L1P5 LINE L1 -380 5776 5017 363 284 47 0 chr12 78489223 78489350 -65297105 + MER94 DNA DNA 2 134 0 519 361 40 9 chr12 78490571 78490798 -65295657 - MIR SINE MIR -12 250 17 1092 241 82 21 chr12 78492500 78492782 -65293673 + MLT1F1 LTR MaLR 1 299 -268 460 340 204 15 chr12 78492932 78493460 -65292995 + L2 LINE L2 2688 3313 0 418 321 46 30 chr12 78493493 78493730 -65292725 - L2 LINE L2 -835 2479 2239 742 80 0 33 chr12 78493800 78493951 -65292504 + (TA)n Simple_repeat Simple_repeat 1 146 0 374 391 29 14 chr12 78493998 78494205 -65292250 - MIR SINE MIR -35 227 18 1043 231 22 0 chr12 78494211 78494436 -65292019 - L1PA16 LINE L1 -16 6150 5921 203 358 91 33 chr12 78494439 78494682 -65291773 - L2 LINE L2 -1141 2173 1917 42733 31 22 2 chr12 78494718 78500751 -65285704 + L1HS LINE L1 1 6155 0 243 0 0 0 chr12 78500796 78500823 -65285632 + (A)n Simple_repeat Simple_repeat 1 27 0 411 249 99 36 chr12 78500824 78501077 -65285378 + L1MCa LINE L1 2097 2365 -4061 23 0 0 0 chr12 78501197 78501220 -65285235 + AT_rich Low_complexity Low_complexity 1 23 0 14585 102 13 1 chr12 78501777 78504705 -65281750 - L1PA7 LINE L1 -1 6153 3201 10675 102 7 19 chr12 78504706 78506340 -65280115 + L1PA7 LINE L1 1580 3194 -2952 653 290 132 48 chr12 78507406 78507490 -65278965 - LTR33 LTR ERVL 0 521 445 885 207 138 56 chr12 78507490 78507882 -65278573 + MSTC LTR MaLR 1 424 -4 653 290 132 48 chr12 78507882 78508276 -65278179 - LTR33 LTR ERVL -76 445 3 1358 291 46 44 chr12 78509269 78509946 -65276509 + L2 LINE L2 2386 3059 -254 433 263 81 25 chr12 78509968 78510128 -65276327 - MLT1F1 LTR MaLR -34 533 365 272 283 61 0 chr12 78510162 78510261 -65276194 - MLT1F1 LTR MaLR -240 290 186 399 240 82 77 chr12 78511019 78511215 -65275240 - MLT1J1 LTR MaLR -13 433 237 316 265 37 52 chr12 78511850 78511986 -65274469 + ERVL LTR ERVL 4083 4216 -1548 592 325 148 35 chr12 78512022 78512623 -65273832 + ERVL LTR ERVL 4292 4960 -694 2227 121 6 24 chr12 78513239 78513577 -65272878 - THE1B LTR MaLR 0 364 33 240 246 73 55 chr12 78513895 78514005 -65272450 + LTR67 LTR ERVL 380 491 -66 908 315 139 9 chr12 78514200 78514655 -65271800 - L2 LINE L2 -282 3031 2523 5118 189 18 9 chr12 78514785 78516496 -65269959 + L1MA4 LINE L1 4576 6299 -1 414 319 50 54 chr12 78516802 78517081 -65269374 + L2 LINE L2 954 1231 -2083 250 227 27 27 chr12 78517291 78517366 -65269089 - L1ME LINE L1 -455 5666 5592 261 98 0 0 chr12 78518029 78518070 -65268385 + (TA)n Simple_repeat Simple_repeat 2 42 0 205 244 0 0 chr12 78519608 78519649 -65266806 + L2 LINE L2 3187 3227 -86 1966 130 10 0 chr12 78519668 78519960 -65266495 + AluSg SINE Alu 1 295 -15 227 433 18 6 chr12 78520146 78520317 -65266138 - L2 LINE L2 -163 3109 2937 5896 129 8 5 chr12 78520938 78522277 -65264178 + L1PA13 LINE L1 4757 6101 -62 937 154 0 0 chr12 78522900 78523056 -65263399 + L1PA14 LINE L1 6004 6159 -2 234 315 47 24 chr12 78523313 78523440 -65263015 + MER94 DNA DNA 1 130 -4 645 108 0 54 chr12 78523661 78523772 -65262683 + FLAM_C SINE Alu 1 105 -38 369 43 0 0 chr12 78523803 78523850 -65262605 + (CA)n Simple_repeat Simple_repeat 2 48 0 2132 128 0 0 chr12 78524332 78524637 -65261818 - AluSg SINE Alu -5 305 1 182 231 15 0 chr12 78525281 78525346 -65261109 + (TA)n Simple_repeat Simple_repeat 1 66 0 24 32 0 0 chr12 78525716 78525747 -65260708 + AT_rich Low_complexity Low_complexity 1 31 0 2297 58 0 14 chr12 78526679 78526995 -65259460 + AluY SINE Alu 1 312 0 456 344 97 0 chr12 78527535 78527721 -65258734 + MIR SINE MIR 33 236 -26 204 163 0 0 chr12 78527743 78527786 -65258669 + (CTA)n Simple_repeat Simple_repeat 1 43 0 2887 104 182 143 chr12 78528851 78529851 -65256604 + LTR12 LTR ERV1 57 714 0 186 43 0 0 chr12 78529911 78529934 -65256521 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 189 0 0 0 chr12 78529933 78529954 -65256501 + (TG)n Simple_repeat Simple_repeat 2 22 0 529 191 48 0 chr12 78530283 78530388 -65256067 + FLAM_A SINE Alu 22 131 -11 462 320 70 22 chr12 78530466 78530866 -65255589 - L1MC/D LINE L1 -2042 5766 5348 5086 240 129 31 chr12 78531022 78532523 -65253932 + MER52A LTR ERV1 1 1753 -2 2300 263 49 27 chr12 78533206 78533981 -65252474 + Zaphod DNA AcHobo 10 801 -3230 258 308 22 0 chr12 78533957 78534048 -65252407 + MER115 DNA AcHobo 601 693 0 * 1431 136 27 0 chr12 78534057 78534277 -65252178 + MER30 DNA MER1_type 4 229 -1 441 54 0 0 chr12 78534594 78534650 -65251805 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2372 161 18 50 chr12 78534879 78535383 -65251072 + LTR22B LTR ERVK 5 492 0 578 293 140 14 chr12 78535613 78535835 -65250620 + MIR SINE MIR 12 261 -1 24 32 0 0 chr12 78535911 78535942 -65250513 + AT_rich Low_complexity Low_complexity 1 31 0 1422 239 39 14 chr12 78535972 78536328 -65250127 + MLT1A1 LTR MaLR 1 365 0 385 272 48 22 chr12 78537972 78538140 -65248315 - L1ME1 LINE L1 -113 6053 5888 1336 225 57 78 chr12 78538155 78538856 -65247599 - L1ME1 LINE L1 -1289 4857 4172 306 224 0 0 chr12 78538870 78538937 -65247518 - L1MC/D LINE L1 -733 5669 5603 301 245 29 10 chr12 78538944 78539046 -65247409 - L1MC/D LINE L1 -5318 1078 975 372 291 52 37 chr12 78539503 78539637 -65246818 + MIR SINE MIR 13 148 -114 625 334 68 38 chr12 78540327 78540941 -65245514 - L1MC/D LINE L1 -5475 921 289 1957 114 0 3 chr12 78542493 78542801 -65243654 + L1HS LINE L1 5849 6155 0 198 0 0 0 chr12 78542844 78542866 -65243589 + (A)n Simple_repeat Simple_repeat 1 22 0 735 246 51 8 chr12 78542866 78543122 -65243333 + L1MCa LINE L1 2091 2357 -4069 23 0 0 0 chr12 78543245 78543268 -65243187 + AT_rich Low_complexity Low_complexity 1 23 0 2946 212 77 8 chr12 78543271 78543989 -65242466 + L1MA9 LINE L1 3796 4463 -1849 2321 169 24 7 chr12 78543989 78544408 -65242047 - MSTB LTR MaLR 0 426 1 2946 212 77 8 chr12 78544408 78545424 -65241031 + L1MA9 LINE L1 4463 5800 -512 353 224 18 35 chr12 78545425 78545595 -65240860 + (TATAA)n Simple_repeat Simple_repeat 5 171 0 1698 214 20 51 chr12 78545615 78546124 -65240331 + L1MA9 LINE L1 5782 6274 -38 24 0 0 0 chr12 78546124 78546148 -65240307 + AT_rich Low_complexity Low_complexity 1 24 0 180 320 120 0 chr12 78547793 78547893 -65238562 - MIR SINE MIR -61 201 90 2008 161 8 8 chr12 78548716 78549071 -65237384 - THE1A LTR MaLR 0 355 1 10851 108 11 6 chr12 78549071 78550644 -65235811 - THE1A-int LTR MaLR 0 1580 1 1901 176 14 8 chr12 78550644 78550996 -65235459 - THE1A LTR MaLR 0 355 2 573 301 101 36 chr12 78551246 78551661 -65234794 + MLT1J2 LTR MaLR 7 448 -2 22 0 0 0 chr12 78553227 78553249 -65233206 + AT_rich Low_complexity Low_complexity 1 22 0 294 298 168 0 chr12 78554750 78554911 -65231544 - MIR SINE MIR -52 210 23 544 249 173 30 chr12 78555311 78555508 -65230947 - MIR SINE MIR -28 234 10 2950 47 29 0 chr12 78555610 78555990 -65230465 + L1PA7 LINE L1 5763 6153 -1 1839 154 3 13 chr12 78556882 78557194 -65229261 + AluJb SINE Alu 1 309 -3 29 47 0 0 chr12 78557626 78557669 -65228786 + AT_rich Low_complexity Low_complexity 1 43 0 6027 151 61 29 chr12 78557920 78559107 -65227348 - Tigger3b DNA MER2_type -5 1226 2 195 42 0 0 chr12 78559254 78559278 -65227177 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 775 146 85 0 chr12 78559295 78559425 -65227030 - AluJb SINE Alu -171 141 1 2223 110 0 10 chr12 78560206 78560516 -65225939 + AluSx SINE Alu 1 307 -5 842 279 115 27 chr12 78560516 78560996 -65225459 + HAL1 LINE L1 1542 2063 -444 28 71 0 0 chr12 78562085 78562141 -65224314 + AT_rich Low_complexity Low_complexity 1 56 0 213 39 0 0 chr12 78563475 78563501 -65222954 + (CA)n Simple_repeat Simple_repeat 2 27 0 35 0 0 0 chr12 78564113 78564148 -65222307 + AT_rich Low_complexity Low_complexity 1 35 0 251 362 68 31 chr12 78564728 78565021 -65221434 + L2 LINE L2 2452 2755 -559 721 311 68 5 chr12 78565421 78565756 -65220699 - LTR16A LTR ERVL -51 399 44 180 77 0 0 chr12 78566150 78566176 -65220279 + (TA)n Simple_repeat Simple_repeat 2 27 0 271 267 0 0 chr12 78566226 78566316 -65220139 + L1MC4 LINE L1 6614 6703 -1339 275 250 0 12 chr12 78566316 78566396 -65220059 + (TA)n Simple_repeat Simple_repeat 1 79 0 23 54 0 0 chr12 78567499 78567536 -65218919 + AT_rich Low_complexity Low_complexity 1 37 0 335 316 115 64 chr12 78567619 78567853 -65218602 + L2 LINE L2 36 281 -3033 515 331 18 0 chr12 78567892 78568058 -65218397 + L2 LINE L2 218 386 -2928 703 328 49 4 chr12 78568410 78568675 -65217780 + L2 LINE L2 2384 2660 -654 419 197 258 15 chr12 78569665 78569797 -65216658 - MER5A DNA MER1_type 0 189 26 291 408 105 0 chr12 78569876 78570143 -65216312 - L2 LINE L2 -577 2737 2443 242 254 263 0 chr12 78570189 78570303 -65216152 - MIR SINE MIR -3 259 116 183 139 0 0 chr12 78570358 78570394 -65216061 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1404 202 77 17 chr12 78570759 78571046 -65215409 - MSTA LTR MaLR -124 304 1 28 61 0 0 chr12 78571396 78571445 -65215010 + AT_rich Low_complexity Low_complexity 1 49 0 448 297 80 17 chr12 78571473 78571648 -65214807 - LTR16A LTR ERVL 0 450 265 347 323 92 43 chr12 78571820 78572102 -65214353 - HAL1 LINE L1 -943 1564 1269 311 250 101 68 chr12 78572104 78572252 -65214203 - MLT1G1 LTR MaLR -194 401 249 352 42 70 14 chr12 78572687 78572758 -65213697 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 438 229 0 15 chr12 78572909 78573148 -65213307 - AluJb SINE Alu 0 334 2 25 0 0 0 chr12 78574057 78574082 -65212373 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr12 78574209 78574260 -65212195 + AT_rich Low_complexity Low_complexity 1 51 0 246 87 0 0 chr12 78574289 78574335 -65212120 + LTR66 LTR ERVL 394 439 -171 231 327 124 9 chr12 78574631 78574744 -65211711 - L2 LINE L2 -17 3296 3171 1582 158 96 4 chr12 78575133 78575405 -65211050 - AluJb SINE Alu -11 301 5 2540 118 19 13 chr12 78625974 78626347 -65160108 + THE1C LTR MaLR 1 375 0 10120 118 29 67 chr12 78626347 78627990 -65158465 + THE1C-int LTR MaLR 1 1580 0 2136 161 14 6 chr12 78627990 78628351 -65158104 + THE1C LTR MaLR 1 364 -11 1075 174 30 25 chr12 78628329 78628530 -65157925 + MER67C LTR ERV1 202 403 -307 * 330 186 41 21 chr12 78628696 78628793 -65157662 + L1MC4a LINE L1 7164 7262 -546 1573 211 119 6 chr12 78629393 78629720 -65156735 + MLT1A1 LTR MaLR 2 365 0 26 50 0 0 chr12 78629865 78629905 -65156550 + AT_rich Low_complexity Low_complexity 1 40 0 381 339 42 0 chr12 78630409 78630527 -65155928 + L2 LINE L2 3150 3272 0 7071 233 105 33 chr12 78631844 78633847 -65152608 + L1M3e LINE L1 2 2155 -4882 5320 24 0 0 chr12 78633853 78634426 -65152029 + L1PA3 LINE L1 5580 6152 -3 1256 270 77 38 chr12 78634439 78635262 -65151193 + L1M3e LINE L1 3880 4742 -2364 2995 148 88 5 chr12 78635543 78636109 -65150346 + L1MA8 LINE L1 5676 6288 -3 26 30 0 0 chr12 78636617 78636650 -65149805 + AT_rich Low_complexity Low_complexity 1 33 0 656 323 94 7 chr12 78637160 78637467 -65148988 - LTR16A LTR ERVL -10 440 107 1430 180 26 49 chr12 78637653 78637958 -65148497 - AluJb SINE Alu -14 298 1 2352 154 7 28 chr12 78637959 78638395 -65148060 - L1MB1 LINE L1 -29 6139 5713 2455 83 29 0 chr12 78638517 78638865 -65147590 + L1PA6 LINE L1 5775 6132 -22 2005 121 20 3 chr12 78638865 78639162 -65147293 + L1PA13 LINE L1 5857 6158 -5 4629 176 21 3 chr12 78639176 78640310 -65146145 + L1M2 LINE L1 4507 5659 -632 1712 182 26 9 chr12 78640461 78640808 -65145647 + L1M3e LINE L1 4774 5126 -1980 1319 113 22 69 chr12 78640811 78641042 -65145413 + AluSp SINE Alu 78 297 -16 1197 187 42 64 chr12 78641047 78641406 -65145049 + L1M3e LINE L1 5133 5483 -1623 2100 115 22 0 chr12 78641406 78641718 -65144737 + L1P4 LINE L1 5367 5685 -478 * 4162 59 13 2 chr12 78641707 78642229 -65144226 + L1PA6 LINE L1 5335 5862 -292 2016 138 59 3 chr12 78642330 78642650 -65143805 - MER1B DNA MER1_type 0 339 2 579 267 20 0 chr12 78642972 78643122 -65143333 + MIR SINE MIR 12 164 -98 3152 240 41 13 chr12 78643123 78643999 -65142456 + L1 LINE L1 4284 5184 -962 1547 180 6 75 chr12 78646193 78646526 -65139929 + AluJb SINE Alu 1 310 -2 1671 99 81 33 chr12 78646614 78646919 -65139536 + AluSq SINE Alu 1 318 0 471 169 0 45 chr12 78646919 78647008 -65139447 - FLAM_A SINE Alu -33 109 25 251 86 0 0 chr12 78647037 78647072 -65139383 - L1M LINE L1 -2454 5354 5320 287 155 0 35 chr12 78647440 78647498 -65138957 - L1P LINE L1 -1207 4939 4884 451 341 57 9 chr12 78647608 78647837 -65138618 + MIR SINE MIR 22 261 -1 437 221 93 43 chr12 78648054 78648194 -65138261 - MIR SINE MIR -9 253 107 301 221 15 0 chr12 78648552 78648620 -65137835 + L2 LINE L2 2712 2780 -534 1190 178 114 27 chr12 78650346 78650553 -65135902 + MER33 DNA MER1_type 1 243 -2342 2071 116 0 10 chr12 78650553 78650846 -65135609 - AluSx SINE Alu -16 296 7 1190 178 114 27 chr12 78650846 78650936 -65135519 + MER33 DNA MER1_type 243 324 0 1067 218 33 149 chr12 78651695 78652058 -65134397 - L1MD2 LINE L1 -68 6174 5854 241 369 27 0 chr12 78652087 78652236 -65134219 - L1MD2 LINE L1 -1907 5901 5749 264 91 0 0 chr12 78652633 78652677 -65133778 + (CA)n Simple_repeat Simple_repeat 1 44 0 5530 132 21 11 chr12 78656125 78657032 -65129423 - L1P LINE L1 -5164 982 67 387 283 50 19 chr12 78657032 78657191 -65129264 + CT-rich Low_complexity Low_complexity 4 167 0 207 0 0 0 chr12 78657216 78657239 -65129216 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 284 147 13 0 chr12 78658292 78658367 -65128088 + T-rich Low_complexity Low_complexity 3 78 0 2346 186 25 8 chr12 78659063 78659535 -65126920 + L1MC3 LINE L1 7306 7785 0 1302 207 90 38 chr12 78659531 78659952 -65126503 + L1M4 LINE L1 4369 4811 -1335 * 2268 106 0 0 chr12 78660256 78660568 -65125887 + AluSx SINE Alu 1 312 0 351 0 0 0 chr12 78660570 78660609 -65125846 + (TA)n Simple_repeat Simple_repeat 2 40 0 191 382 59 34 chr12 78661818 78662056 -65124399 + L2 LINE L2 227 470 -2844 1979 172 8 3 chr12 78662163 78662518 -65123937 - L1PA15 LINE L1 0 6165 5809 276 91 0 0 chr12 78662838 78662882 -65123573 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr12 78663348 78663371 -65123084 + AT_rich Low_complexity Low_complexity 1 23 0 398 217 70 5 chr12 78664066 78664249 -65122206 + MER58 DNA MER1_type 9 2415 -5 204 97 0 0 chr12 78665767 78665798 -65120657 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 324 15 29 chr12 78666147 78666215 -65120240 + L2 LINE L2 2996 3062 -210 1841 164 0 3 chr12 78666332 78666624 -65119831 - AluJb SINE Alu -21 291 1 288 125 107 18 chr12 78666749 78666805 -65119650 + MLT1E1 LTR MaLR 159 219 -435 1298 181 24 8 chr12 78666811 78667059 -65119396 + AluJb SINE Alu 7 258 -54 229 229 0 96 chr12 78667065 78667148 -65119307 + AluJ/FRAM SINE Alu 223 297 -5 615 270 81 36 chr12 78667152 78667485 -65118970 + MLT1E3 LTR MaLR 148 495 -129 2995 160 35 14 chr12 78668225 78668844 -65117611 - L1 LINE L1 -2460 3686 3055 624 188 87 7 chr12 78668978 78669127 -65117328 + MLT1A1 LTR MaLR 1 161 -204 293 339 55 126 chr12 78669136 78669390 -65117065 + L2 LINE L2 2994 3229 -43 195 100 0 0 chr12 78669411 78669441 -65117014 + (ATG)n Simple_repeat Simple_repeat 3 32 0 457 351 22 48 chr12 78669475 78669743 -65116712 - MIR SINE MIR -1 261 1 6702 51 16 0 chr12 78669845 78670679 -65115776 - L1PA6 LINE L1 -1 6153 5280 221 0 35 0 chr12 78670679 78670708 -65115747 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6702 51 16 0 chr12 78670708 78671472 -65114983 - L1PA6 LINE L1 -874 5280 4530 216 0 0 0 chr12 78672000 78672024 -65114431 + (A)n Simple_repeat Simple_repeat 1 24 0 527 328 35 13 chr12 78672540 78672772 -65113683 - MLT1H1-int LTR MaLR -826 545 309 399 293 155 43 chr12 78672927 78673066 -65113389 - MLT1H1 LTR MaLR -13 542 420 2185 131 38 14 chr12 78673066 78673432 -65113023 + THE1C LTR MaLR 1 375 0 399 293 155 43 chr12 78673432 78673640 -65112815 - MLT1H1 LTR MaLR -135 420 156 257 328 9 43 chr12 78673712 78673828 -65112627 + L2 LINE L2 2919 3030 -283 1950 129 4 0 chr12 78674259 78674593 -65111862 - AluSx SINE Alu 0 335 1 457 318 20 40 chr12 78676315 78676513 -65109942 - MIR3 SINE MIR -7 201 8 254 368 75 9 chr12 78678642 78678748 -65107707 - L2 LINE L2 -3 3269 3157 22 0 0 0 chr12 78679246 78679268 -65107187 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr12 78680489 78680519 -65105936 + (T)n Simple_repeat Simple_repeat 1 30 0 279 358 159 7 chr12 78681404 78681555 -65104900 - MIR3 SINE MIR -21 187 14 28 29 0 0 chr12 78683415 78683450 -65103005 + AT_rich Low_complexity Low_complexity 1 35 0 222 318 0 55 chr12 78684629 78684739 -65101716 - MER5B DNA MER1_type -2 176 73 323 341 12 12 chr12 78684766 78685008 -65101447 + CT-rich Low_complexity Low_complexity 1 242 0 1955 133 58 6 chr12 78685181 78685511 -65100944 + MER46B DNA MER2_type 15 236 0 209 336 104 71 chr12 78685595 78685875 -65100580 - L3 LINE CR1 -1223 354 66 510 308 35 15 chr12 78687066 78687264 -65099191 + L2 LINE L2 3110 3311 -2 2480 268 62 20 chr12 78688363 78690718 -65095737 + L1M3a LINE L1 2 1990 -4046 258 319 0 0 chr12 78690851 78690920 -65095535 + L1M3a LINE L1 2385 2453 -3581 2203 256 43 7 chr12 78690932 78691623 -65094832 + L1M3a LINE L1 2420 3135 -2899 1136 187 46 0 chr12 78691620 78692007 -65094448 + L1M3a LINE L1 3743 4257 -1777 * 337 164 0 16 chr12 78692005 78692066 -65094389 + L1M3a LINE L1 4733 4792 -1242 * 242 312 92 34 chr12 78692199 78692322 -65094133 + L1M4c LINE L1 1530 1644 -4919 2179 75 7 45 chr12 78692322 78692630 -65093825 + AluY SINE Alu 1 296 -15 242 312 92 34 chr12 78692630 78692798 -65093657 + L1M4c LINE L1 1644 1987 -4576 181 125 21 21 chr12 78692838 78692886 -65093569 + (TA)n Simple_repeat Simple_repeat 1 48 0 386 154 13 0 chr12 78693223 78693301 -65093154 + CT-rich Low_complexity Low_complexity 4 82 0 21 0 0 0 chr12 78693776 78693797 -65092658 + AT_rich Low_complexity Low_complexity 1 21 0 382 273 50 66 chr12 78694106 78694304 -65092151 - L1MEc LINE L1 -4170 2226 2032 593 302 102 36 chr12 78694488 78695214 -65091241 - L1MEc LINE L1 -4600 1796 1023 1129 306 74 19 chr12 78695231 78695903 -65090552 + L1MC4 LINE L1 7190 7898 -144 226 272 12 12 chr12 78695903 78695984 -65090471 + (TA)n Simple_repeat Simple_repeat 1 81 0 200 233 0 0 chr12 78696583 78696626 -65089829 + T-rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr12 78697331 78697356 -65089099 + AT_rich Low_complexity Low_complexity 1 25 0 193 369 36 9 chr12 78697693 78697804 -65088651 - L2 LINE L2 -29 3284 3171 33 66 0 0 chr12 78697902 78697963 -65088492 + AT_rich Low_complexity Low_complexity 1 61 0 183 80 0 0 chr12 78698219 78698244 -65088211 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 451 298 115 31 chr12 78698278 78698469 -65087986 + MIR SINE MIR 50 256 -6 2461 40 10 3 chr12 78698553 78698856 -65087599 + AluY SINE Alu 1 305 -6 340 350 179 18 chr12 78699043 78699323 -65087132 + L2 LINE L2 2989 3313 0 210 329 14 0 chr12 78699335 78699405 -65087050 - L2 LINE L2 -778 2536 2466 211 127 127 0 chr12 78699585 78699640 -65086815 + (TTAAA)n Simple_repeat Simple_repeat 1 62 0 195 129 0 0 chr12 78699702 78699733 -65086722 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 29 0 0 chr12 78701633 78701667 -65084788 + AT_rich Low_complexity Low_complexity 1 34 0 181 283 0 19 chr12 78703954 78704007 -65082448 - L2 LINE L2 -4 3268 3217 26 30 0 0 chr12 78704007 78704040 -65082415 + AT_rich Low_complexity Low_complexity 1 33 0 250 340 72 0 chr12 78704372 78704469 -65081986 + L2 LINE L2 3169 3272 0 1349 146 69 4 chr12 78704831 78705106 -65081349 - L1MA4 LINE L1 -6 6294 6002 28 0 0 0 chr12 78705116 78705144 -65081311 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 78706001 78706025 -65080430 + AT_rich Low_complexity Low_complexity 1 24 0 224 273 61 79 chr12 78706025 78706190 -65080265 - MIR SINE MIR -27 235 74 2547 205 67 25 chr12 78706249 78706843 -65079612 - MLT1E2 LTR MaLR -3 623 5 190 331 39 94 chr12 78708628 78708755 -65077700 - L2 LINE L2 -1 3271 3152 201 304 38 25 chr12 78710505 78710584 -65075871 - MER5B DNA MER1_type -29 149 70 250 329 0 0 chr12 78710614 78710696 -65075759 + L3 LINE CR1 920 1001 -576 289 342 66 13 chr12 78710946 78711098 -65075357 + MIR SINE MIR 48 207 -55 203 189 0 0 chr12 78711129 78711166 -65075289 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1122 224 92 58 chr12 78713064 78713511 -65072944 - MLT1C LTR MaLR 0 467 6 410 357 16 44 chr12 78713522 78713774 -65072681 - HAL1 LINE L1 -1409 1098 854 1117 176 29 0 chr12 78714599 78714809 -65071646 - L1MA7 LINE L1 -24 6267 6052 24 24 0 24 chr12 78715754 78715782 -65070673 + AT_rich Low_complexity Low_complexity 1 29 -12 2810 13 3 0 chr12 78715782 78716098 -65070357 + AluYb8 SINE Alu 1 317 -1 24 24 0 24 chr12 78716098 78716111 -65070344 + AT_rich Low_complexity Low_complexity 29 41 0 31 68 0 0 chr12 78716164 78716223 -65070232 + AT_rich Low_complexity Low_complexity 1 59 0 232 275 56 28 chr12 78716382 78716524 -65069931 - L1 LINE L1 -1620 4526 4381 450 283 168 12 chr12 78717416 78717589 -65068866 + MIR SINE MIR 63 262 0 1752 88 12 20 chr12 78718671 78718965 -65067490 - AluSg SINE Alu 0 325 34 489 202 56 28 chr12 78718997 78719175 -65067280 - MER53 DNA DNA -4 185 3 361 298 38 8 chr12 78720115 78720246 -65066209 - MARNA DNA Mariner -348 238 104 237 167 64 51 chr12 78720306 78720384 -65066071 - MER103 DNA DNA -18 148 70 1986 140 0 0 chr12 78721454 78721794 -65064661 - AluSq SINE Alu 0 340 1 23 0 0 0 chr12 78721797 78721820 -65064635 + AT_rich Low_complexity Low_complexity 1 23 0 1767 186 84 14 chr12 78721873 78722243 -65064212 - MSTD LTR MaLR 0 396 1 602 184 152 19 chr12 78724642 78724800 -65061655 + MER46C DNA MER2_type 4 182 -156 880 186 0 45 chr12 78724906 78725083 -65061372 + MER46C DNA MER2_type 169 337 -1 2388 59 13 0 chr12 78725126 78725433 -65061022 - AluY SINE Alu 0 311 1 439 248 16 16 chr12 78725528 78725649 -65060806 + MIR SINE MIR 21 141 -121 563 138 0 0 chr12 78725649 78725736 -65060719 + AluSc SINE Alu 45 131 -178 246 316 0 0 chr12 78725766 78725845 -65060610 + MIR SINE MIR 146 224 -38 288 393 7 7 chr12 78725899 78726039 -65060416 - MIR SINE MIR -115 147 8 242 306 8 16 chr12 78726969 78727090 -65059365 + L1 LINE L1 3692 3811 -2335 21 126 0 0 chr12 78727892 78728067 -65058388 + AT_rich Low_complexity Low_complexity 1 175 0 207 0 0 0 chr12 78728663 78728686 -65057769 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 337 319 54 16 chr12 78730069 78730254 -65056201 + MLT1L LTR MaLR 424 615 0 246 139 0 0 chr12 78730509 78730545 -65055910 + MLT1B LTR MaLR 354 389 -1 234 0 0 0 chr12 78730613 78730639 -65055816 + (TA)n Simple_repeat Simple_repeat 1 26 0 239 322 16 16 chr12 78730821 78730942 -65055513 - L1ME LINE L1 -452 5669 5549 928 273 38 14 chr12 78731008 78731320 -65055135 - L2 LINE L2 -301 3012 2698 825 142 86 12 chr12 78731661 78731823 -65054632 + MER53 DNA DNA 16 189 0 699 333 72 13 chr12 78731864 78732239 -65054216 - MLT1I LTR MaLR -4 405 9 2083 101 25 9 chr12 78735170 78735496 -65050959 - L1PA11 LINE L1 0 6174 5844 308 107 89 0 chr12 78735643 78735699 -65050756 - L1PA11 LINE L1 0 6174 6114 2176 160 109 0 chr12 78735772 78736203 -65050252 - L1MA4 LINE L1 -5 6295 5818 360 230 14 0 chr12 78736251 78736325 -65050130 + MLT1E1 LTR MaLR 1 75 -579 * 2102 226 42 44 chr12 78736320 78736886 -65049569 + MLT1E1 LTR MaLR 35 599 -55 257 276 35 23 chr12 78737165 78737252 -65049203 + MIR3 SINE MIR 121 208 0 220 292 94 42 chr12 78737335 78737431 -65049024 + MIR SINE MIR 40 140 -68 205 182 0 0 chr12 78737961 78737994 -65048461 + A-rich Low_complexity Low_complexity 2 34 0 247 261 15 31 chr12 78738377 78738442 -65048013 - L2 LINE L2 -2 3311 3248 338 276 248 19 chr12 78739180 78739390 -65047065 + MIR SINE MIR 5 262 0 2693 246 63 14 chr12 78740439 78741431 -65045024 - L1M4 LINE L1 -2691 3455 2415 21 89 0 0 chr12 78742125 78742181 -65044274 + AT_rich Low_complexity Low_complexity 1 56 0 301 333 37 37 chr12 78742529 78742938 -65043517 - HAL1 LINE L1 -969 1538 1130 222 307 84 4 chr12 78743780 78743907 -65042548 - MIR SINE MIR -43 165 26 344 271 110 10 chr12 78744571 78744708 -65041747 - MIR SINE MIR -39 169 15 32 67 0 0 chr12 78745605 78745665 -65040790 + AT_rich Low_complexity Low_complexity 1 60 0 2125 113 0 0 chr12 78745703 78746026 -65040429 - AluY SINE Alu 0 323 1 2766 295 127 29 chr12 78746376 78748125 -65038330 + L2 LINE L2 1387 3312 -1 795 251 82 4 chr12 78748187 78748418 -65038037 + MIR SINE MIR 13 261 -1 2206 186 35 15 chr12 78748571 78748969 -65037486 + MER44D DNA MER2_type 1 406 -299 2549 137 46 2 chr12 78748974 78749391 -65037064 + Tigger7 DNA MER2_type 2053 2487 0 286 281 56 0 chr12 78754577 78754666 -65031789 + MIR SINE MIR 34 127 -135 229 118 0 0 chr12 78754695 78754729 -65031726 - MLT1B LTR MaLR 0 390 357 287 275 159 60 chr12 78755174 78755356 -65031099 - MLT1J LTR MaLR -86 425 226 307 197 99 0 chr12 78755477 78755548 -65030907 - MLT1L LTR MaLR -520 95 18 293 337 163 12 chr12 78755889 78756061 -65030394 - MIR SINE MIR -16 246 49 1144 193 102 53 chr12 78756082 78756404 -65030051 - MER58B DNA MER1_type -3 338 1 1253 161 69 50 chr12 78756593 78756853 -65029602 - MLT1B LTR MaLR -122 268 4 277 333 37 37 chr12 78756899 78757016 -65029439 - L2 LINE L2 -5 3267 3151 206 278 189 0 chr12 78757016 78757106 -65029349 + MER5B DNA MER1_type 1 107 -71 186 314 19 29 chr12 78757231 78757336 -65029119 - MIR3 SINE MIR -53 155 52 1804 80 0 4 chr12 78757601 78757851 -65028604 - L1PA7 LINE L1 -3 6151 5903 212 382 76 15 chr12 78760738 78760869 -65025586 - L3b LINE CR1 -13 1570 1432 436 186 0 0 chr12 78760909 78760979 -65025476 + Tigger2 DNA MER2_type 2 71 -2647 * 2304 149 48 39 chr12 78760967 78761325 -65025130 + Tigger2 DNA MER2_type 2273 2626 -92 180 0 0 0 chr12 78761325 78761345 -65025110 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1352 171 8 4 chr12 78761345 78761585 -65024870 - L1PB4 LINE L1 -15 6141 5901 2304 149 48 39 chr12 78761585 78761667 -65024788 + Tigger2 DNA MER2_type 2625 2718 0 312 276 95 67 chr12 78761727 78761937 -65024518 - L1ME3A LINE L1 -116 6054 5839 564 317 90 30 chr12 78762512 78762846 -65023609 - L1MEc LINE L1 -4788 1522 1169 434 62 88 0 chr12 78762936 78763049 -65023406 + (TA)n Simple_repeat Simple_repeat 1 123 0 681 258 52 94 chr12 78763056 78763704 -65022751 - L1MEc LINE L1 -5059 1060 440 22 0 0 0 chr12 78764179 78764201 -65022254 + AT_rich Low_complexity Low_complexity 1 22 0 285 321 75 37 chr12 78764315 78764449 -65022006 - L2 LINE L2 -93 3179 3041 21 0 0 0 chr12 78765151 78765172 -65021283 + AT_rich Low_complexity Low_complexity 1 21 0 425 152 13 0 chr12 78766774 78766853 -65019602 - L1MA7 LINE L1 0 6291 6212 276 279 125 57 chr12 78767614 78768015 -65018440 - L1M4 LINE L1 -1559 4587 4160 655 321 89 23 chr12 78768093 78768576 -65017879 + L1ME3A LINE L1 5415 5929 -241 2077 100 0 4 chr12 78768726 78769007 -65017448 + AluY SINE Alu 21 300 -11 225 139 0 0 chr12 78769606 78769649 -65016806 + (CA)n Simple_repeat Simple_repeat 2 44 0 551 259 17 0 chr12 78769667 78769783 -65016672 - FLAM_A SINE Alu -13 120 3 29 28 0 0 chr12 78770039 78770075 -65016380 + AT_rich Low_complexity Low_complexity 1 36 0 375 315 103 27 chr12 78770995 78771141 -65015314 - MIR3 SINE MIR -32 176 20 1130 271 172 21 chr12 78771323 78771758 -65014697 + MLT1G1 LTR MaLR 72 572 -23 21 0 0 0 chr12 78771855 78771876 -65014579 + AT_rich Low_complexity Low_complexity 1 21 0 404 293 113 8 chr12 78772004 78772137 -65014318 + MIR SINE MIR 34 180 -82 712 273 56 35 chr12 78772173 78772404 -65014051 + MIR SINE MIR 27 262 0 781 316 34 25 chr12 78773007 78773330 -65013125 + L3b LINE CR1 1122 1447 -136 441 239 200 14 chr12 78774220 78774417 -65012038 + MLT1H LTR MaLR 332 549 0 2408 67 0 10 chr12 78775355 78775669 -65010786 - AluY SINE Alu 0 311 1 294 270 48 127 chr12 78775783 78775972 -65010483 - MER5A DNA MER1_type -5 184 11 379 229 12 12 chr12 78777881 78777964 -65008491 + L2 LINE L2 3227 3309 -4 2354 58 0 7 chr12 78779208 78779500 -65006955 - AluY SINE Alu -21 290 1 29 0 0 0 chr12 78779642 78779671 -65006784 + AT_rich Low_complexity Low_complexity 1 29 0 327 333 144 26 chr12 78779861 78780056 -65006399 - L3b LINE CR1 -145 1438 1221 31 26 0 0 chr12 78781227 78781265 -65005190 + AT_rich Low_complexity Low_complexity 1 38 0 256 200 114 0 chr12 78781977 78782047 -65004408 + MIR SINE MIR 113 190 -72 262 324 146 5 chr12 78782799 78782984 -65003471 + L2 LINE L2 3098 3308 -5 274 282 76 30 chr12 78784441 78784572 -65001883 - MIR SINE MIR -6 256 120 301 318 65 70 chr12 78784699 78784913 -65001542 + MIR SINE MIR 1 213 -49 355 316 184 30 chr12 78785506 78786112 -65000343 + L2 LINE L2 2594 3311 -2 239 279 9 63 chr12 78786101 78786212 -65000243 + MIR SINE MIR 78 182 -80 * 212 315 109 22 chr12 78786355 78786447 -65000008 - MER91C DNA MER1_type -19 121 22 28 71 0 0 chr12 78786586 78786642 -64999813 + AT_rich Low_complexity Low_complexity 1 56 0 369 299 144 30 chr12 78787528 78787729 -64998726 + MIR SINE MIR 21 244 -18 216 304 96 48 chr12 78788032 78788157 -64998298 + MER5A DNA MER1_type 54 184 -5 693 119 15 8 chr12 78788523 78788657 -64997798 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2087 175 47 24 chr12 78789029 78789452 -64997003 + Tigger2a DNA MER2_type 2 434 0 1175 249 88 27 chr12 78789489 78789862 -64996593 + MSTD LTR MaLR 1 396 0 273 134 31 31 chr12 78789890 78789979 -64996476 + (TA)n Simple_repeat Simple_repeat 2 93 -5 2104 117 0 0 chr12 78789979 78790262 -64996193 - AluSg SINE Alu -27 283 1 273 134 31 31 chr12 78790262 78790269 -64996186 + (TA)n Simple_repeat Simple_repeat 92 98 0 331 347 155 5 chr12 78790499 78790718 -64995737 - MIR SINE MIR 0 262 11 306 247 56 11 chr12 78790889 78790978 -64995477 - MLT1H LTR MaLR -23 526 434 261 0 0 0 chr12 78791157 78791186 -64995269 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 219 57 40 chr12 78791287 78791515 -64994940 - MLT1H LTR MaLR -317 232 1 2420 18 11 0 chr12 78791563 78791848 -64994607 - L1PA2 LINE L1 -4 6151 5864 496 15 44 0 chr12 78793479 78793547 -64992908 + (TTTC)n Simple_repeat Simple_repeat 1 71 0 246 156 0 0 chr12 78793557 78793602 -64992853 + (CA)n Simple_repeat Simple_repeat 1 45 0 1747 166 9 100 chr12 78793623 78794052 -64992403 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr12 78794886 78794916 -64991539 + GC_rich Low_complexity Low_complexity 1 30 0 201 121 0 0 chr12 78795457 78795490 -64990965 + (TAA)n Simple_repeat Simple_repeat 1 33 0 241 326 0 43 chr12 78795801 78795939 -64990516 + G-rich Low_complexity Low_complexity 3 134 0 407 319 81 87 chr12 78796401 78796897 -64989558 + L1M2 LINE L1 466 958 -5891 1974 125 4 0 chr12 78802211 78802523 -64983932 - AluSx SINE Alu 0 313 1 461 333 0 11 chr12 78803128 78803302 -64983153 - MIR SINE MIR -86 176 5 3093 184 23 6 chr12 78803426 78804073 -64982382 - L1MC2 LINE L1 -19 6325 5668 591 294 33 69 chr12 78805279 78805554 -64980901 - L2 LINE L2 -1772 1542 1278 568 229 49 7 chr12 78805554 78805698 -64980757 - MER45A DNA AcHobo 0 178 29 338 361 8 0 chr12 78805714 78805836 -64980619 - L2 LINE L2 -2029 1285 1163 23 0 0 0 chr12 78806419 78806442 -64980013 + AT_rich Low_complexity Low_complexity 1 23 0 314 47 0 0 chr12 78807030 78807073 -64979382 + MADE1 DNA Mariner 1 43 -37 22 56 0 0 chr12 78808280 78808316 -64978139 + AT_rich Low_complexity Low_complexity 1 36 0 345 250 0 13 chr12 78808896 78808972 -64977483 - MER5A DNA MER1_type -111 78 4 300 91 0 0 chr12 78810188 78810232 -64976223 + (ATG)n Simple_repeat Simple_repeat 2 45 0 979 245 5 0 chr12 78811054 78811262 -64975193 + MER3 DNA MER1_type 1 209 0 22 56 0 0 chr12 78811465 78811501 -64974954 + AT_rich Low_complexity Low_complexity 1 36 0 251 291 38 0 chr12 78812358 78812437 -64974018 + MER94 DNA DNA 2 83 -51 303 329 86 0 chr12 78812612 78812752 -64973703 - MIR SINE MIR -2 260 109 377 289 141 13 chr12 78812786 78812942 -64973513 - MIR SINE MIR -26 236 61 349 354 30 55 chr12 78813890 78814054 -64972401 + L2 LINE L2 3113 3272 0 189 147 0 0 chr12 78814284 78814318 -64972137 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 198 0 0 0 chr12 78814317 78814339 -64972116 + (T)n Simple_repeat Simple_repeat 1 22 0 443 296 266 0 chr12 78815405 78815604 -64970851 + MIR SINE MIR 11 262 0 26 74 0 0 chr12 78816047 78816101 -64970354 + AT_rich Low_complexity Low_complexity 1 54 0 2642 78 3 22 chr12 78816289 78816648 -64969807 - THE1A LTR MaLR 0 355 4 735 0 54 9 chr12 78816665 78816776 -64969679 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 238 363 37 4 chr12 78817399 78817536 -64968919 - MIR SINE MIR -62 146 19 36 108 0 0 chr12 78817814 78817962 -64968493 + AT_rich Low_complexity Low_complexity 1 148 0 210 247 12 59 chr12 78818069 78818154 -64968301 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 424 316 43 22 chr12 78818169 78818447 -64968008 - L1ME4a LINE L1 -178 5943 5660 183 129 0 0 chr12 78818689 78818720 -64967735 + (TTA)n Simple_repeat Simple_repeat 1 31 0 265 196 71 116 chr12 78818878 78818990 -64967465 - MIR SINE MIR -75 187 81 853 276 31 9 chr12 78822265 78822490 -64963965 + MIR SINE MIR 32 261 -1 27 0 0 0 chr12 78822890 78822917 -64963538 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 78823656 78823677 -64962778 + AT_rich Low_complexity Low_complexity 1 21 0 417 302 36 5 chr12 78823809 78824001 -64962454 + L1MA9 LINE L1 6077 6274 -38 2247 63 28 0 chr12 78824428 78824715 -64961740 + AluY SINE Alu 1 295 -16 23 0 0 0 chr12 78824715 78824738 -64961717 + AT_rich Low_complexity Low_complexity 1 23 0 393 22 0 0 chr12 78824919 78824965 -64961490 + (TG)n Simple_repeat Simple_repeat 2 47 0 435 68 0 0 chr12 78825496 78825555 -64960900 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 363 115 6 chr12 78826203 78826385 -64960070 + L2 LINE L2 3110 3311 -2 207 0 0 0 chr12 78826820 78826843 -64959612 + (A)n Simple_repeat Simple_repeat 1 23 0 2279 64 44 3 chr12 78829111 78829406 -64957049 - AluSg SINE Alu -3 307 1 27 62 0 0 chr12 78830360 78830408 -64956047 + AT_rich Low_complexity Low_complexity 1 48 0 1961 103 0 4 chr12 78830611 78830872 -64955583 - AluSq SINE Alu -16 297 38 2454 75 0 3 chr12 78831641 78831947 -64954508 + AluSp SINE Alu 1 305 -8 1899 150 7 0 chr12 78833858 78834152 -64952303 - AluJb SINE Alu -12 300 5 1769 190 8 20 chr12 78835264 78835616 -64950839 - MER7A DNA MER2_type 0 346 1 266 260 65 0 chr12 78838901 78838978 -64947477 + MIR SINE MIR 110 191 -71 423 0 0 0 chr12 78839462 78839509 -64946946 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 350 21 21 chr12 78840101 78840198 -64946257 - L2 LINE L2 -242 3030 2934 1742 182 0 17 chr12 78840307 78840604 -64945851 + AluJb SINE Alu 3 294 -18 209 288 23 62 chr12 78840643 78840874 -64945581 - L2 LINE L2 -559 2755 2466 22 0 0 0 chr12 78841276 78841298 -64945157 + AT_rich Low_complexity Low_complexity 1 22 0 1339 233 7 0 chr12 78841530 78841817 -64944638 - Charlie1b DNA MER1_type -234 289 1 41 36 0 0 chr12 78842700 78842755 -64943700 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr12 78842881 78842909 -64943546 + AT_rich Low_complexity Low_complexity 1 28 0 265 256 25 16 chr12 78843330 78843451 -64943004 + (TA)n Simple_repeat Simple_repeat 1 122 0 255 272 118 39 chr12 78844204 78844461 -64941994 - L1MC/D LINE L1 -391 5730 5607 2063 118 0 16 chr12 78846831 78847135 -64939320 - AluSx SINE Alu -13 299 1 225 151 68 0 chr12 78847262 78847335 -64939120 + (TA)n Simple_repeat Simple_repeat 1 78 0 189 74 0 0 chr12 78847667 78847694 -64938761 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 87 17 chr12 78848736 78848966 -64937489 + MIR SINE MIR 17 262 0 185 307 67 13 chr12 78853556 78853631 -64932824 + L2 LINE L2 3234 3312 -1 28 0 0 0 chr12 78858949 78858977 -64927478 + AT_rich Low_complexity Low_complexity 1 28 0 567 175 0 10 chr12 78861277 78861380 -64925075 - FLAM_A SINE Alu -10 132 31 268 263 53 0 chr12 78861403 78861479 -64924976 - MIR SINE MIR -75 187 108 23 33 0 0 chr12 78861869 78861899 -64924556 + AT_rich Low_complexity Low_complexity 1 30 0 2649 175 39 23 chr12 78862636 78863207 -64923248 - L1MC1 LINE L1 -1 6332 5753 235 191 0 0 chr12 78863212 78863254 -64923201 - MLT2B1 LTR ERVL 0 464 423 2164 202 36 45 chr12 78863307 78863778 -64922677 - MLT2B1 LTR ERVL -53 467 1 26457 193 40 13 chr12 78863778 78867576 -64918879 - ERVL-B1 LTR ERVL -7 5757 1721 1916 140 4 0 chr12 78867576 78867848 -64918607 + AluSx SINE Alu 1 273 -39 26457 193 40 13 chr12 78867848 78869597 -64916858 - ERVL-B1 LTR ERVL -4043 1721 22 1800 212 99 33 chr12 78869623 78870108 -64916347 - MLT2B1 LTR ERVL -3 517 1 681 153 0 0 chr12 78870117 78870228 -64916227 - L1MC1 LINE L1 -637 5707 5597 210 37 0 0 chr12 78870567 78870594 -64915861 + (TG)n Simple_repeat Simple_repeat 2 28 0 186 394 0 15 chr12 78870804 78870870 -64915585 + MER5A DNA MER1_type 59 123 -66 326 325 49 37 chr12 78871046 78871292 -64915163 - L1ME4a LINE L1 -265 5856 5608 405 54 0 0 chr12 78872105 78872161 -64914294 + (TG)n Simple_repeat Simple_repeat 1 56 0 1128 225 60 44 chr12 78872917 78873281 -64913174 + MER93b LTR ERV1 1 370 -3 300 108 0 245 chr12 78873524 78873626 -64912829 + MADE1 DNA Mariner 4 80 0 2003 216 25 50 chr12 78873793 78874316 -64912139 + MER67D LTR ERV1 5 514 0 2238 59 4 0 chr12 78874427 78874700 -64911755 - AluY SINE Alu -1 310 37 234 269 0 77 chr12 78874949 78875027 -64911428 + L2 LINE L2 3193 3264 -8 1421 191 46 14 chr12 78875627 78875909 -64910546 + AluJo SINE Alu 1 291 -11 25 65 0 0 chr12 78876299 78876345 -64910110 + AT_rich Low_complexity Low_complexity 1 46 0 1501 248 112 43 chr12 78877015 78877621 -64908834 - L2 LINE L2 -998 2316 1669 1663 180 45 25 chr12 78878311 78878667 -64907788 + MLT1A1 LTR MaLR 1 363 -2 303 333 0 0 chr12 78878925 78879006 -64907449 - MLT1L LTR MaLR -130 485 405 3390 68 14 5 chr12 78879721 78880161 -64906294 - MLT2A1 LTR ERVL 0 444 1 620 39 0 0 chr12 78880161 78880238 -64906217 - HERVL-A1 LTR ERVL 0 5654 5578 1167 162 166 33 chr12 78880397 78880699 -64905756 + MER61A LTR ERV1 2 343 0 2168 169 37 65 chr12 78880699 78881209 -64905246 + MER61A-int LTR ERV1 1 496 -4721 312 209 45 0 chr12 78881288 78881355 -64905100 + MER61A-int LTR ERV1 631 700 -4517 9627 132 36 19 chr12 78881436 78883477 -64902978 + MER61A-int LTR ERV1 2215 4469 -546 505 103 0 0 chr12 78883478 78883546 -64902909 - MER61-int LTR ERV1 -914 4303 4236 6508 123 13 9 chr12 78883560 78884874 -64901581 + MER61A-int LTR ERV1 3858 5217 0 1416 196 66 42 chr12 78884875 78885207 -64901248 + MER61A LTR ERV1 4 343 0 1295 97 15 0 chr12 78885207 78885402 -64901053 - HERVL-A1 LTR ERVL -80 5574 5377 782 74 0 0 chr12 78885407 78885502 -64900953 - HERVL-A1 LTR ERVL -2244 3410 3316 7841 101 6 12 chr12 78885504 78886638 -64899817 - HERVL-A1 LTR ERVL -2918 2736 1610 238 143 0 0 chr12 78886707 78886749 -64899706 + (T)n Simple_repeat Simple_repeat 1 42 0 293 366 14 14 chr12 78886817 78887024 -64899431 + CT-rich Low_complexity Low_complexity 1 207 0 12288 79 0 1 chr12 78887208 78888771 -64897684 - HERVL-A1 LTR ERVL -4093 1561 1 2116 66 55 4 chr12 78888771 78889133 -64897322 - MLT2A1 LTR ERVL 0 444 1 452 274 274 7 chr12 78889541 78889898 -64896557 - L2 LINE L2 -78 3235 2779 186 240 20 20 chr12 78890686 78890736 -64895719 + MIR3 SINE MIR 8 57 -151 419 317 211 31 chr12 78891950 78892363 -64894092 + HAL1 LINE L1 1095 1581 -926 233 296 23 0 chr12 78892513 78892601 -64893854 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 1912 88 11 4 chr12 78892860 78893122 -64893333 + AluY SINE Alu 48 311 0 432 276 104 7 chr12 78893421 78893700 -64892755 + L1ME LINE L1 2725 3030 -3116 1558 294 110 59 chr12 78893741 78895151 -64891304 + L1ME LINE L1 3202 4698 -1448 1905 196 11 3 chr12 78895151 78895509 -64890946 - MLT1A1 LTR MaLR -4 361 1 1558 294 110 59 chr12 78895509 78895648 -64890807 + L1ME LINE L1 4698 4829 -1317 2238 109 0 0 chr12 78895792 78896086 -64890369 + AluSg SINE Alu 1 294 -16 288 279 101 0 chr12 78896279 78896408 -64890047 + L1ME LINE L1 5311 5452 -712 16640 33 0 0 chr12 78897452 78900231 -64886224 + L1PA3 LINE L1 3378 6159 0 203 61 30 0 chr12 78900524 78900557 -64885898 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4261 189 51 41 chr12 78900660 78901161 -64885294 + L1MA10 LINE L1 5263 5757 -577 252 0 0 0 chr12 78901161 78901189 -64885266 + (CA)n Simple_repeat Simple_repeat 2 29 0 4261 189 51 41 chr12 78901189 78901746 -64884709 + L1MA10 LINE L1 5757 6332 -2 29 47 0 0 chr12 78902391 78902434 -64884021 + AT_rich Low_complexity Low_complexity 1 43 0 345 330 0 9 chr12 78902554 78902663 -64883792 - L2 LINE L2 -15 3298 3191 28 0 0 0 chr12 78903281 78903309 -64883146 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 78904177 78904202 -64882253 + AT_rich Low_complexity Low_complexity 1 25 0 7503 25 52 0 chr12 78904217 78905395 -64881060 - L1PA4 LINE L1 0 6155 4957 1591 220 62 52 chr12 78906772 78907272 -64879183 - MLT1D LTR MaLR 0 505 1 212 345 163 14 chr12 78908476 78908844 -64877611 + L2 LINE L2 709 1131 -2183 23 0 0 0 chr12 78908960 78908983 -64877472 + AT_rich Low_complexity Low_complexity 1 23 0 587 360 101 26 chr12 78908986 78909611 -64876844 + L2 LINE L2 2218 2889 -425 25 31 0 0 chr12 78910430 78910462 -64875993 + AT_rich Low_complexity Low_complexity 1 32 0 330 87 0 0 chr12 78910806 78910852 -64875603 + (TTA)n Simple_repeat Simple_repeat 2 47 0 194 380 13 0 chr12 78910852 78910931 -64875524 - MIR SINE MIR -119 143 64 253 86 0 0 chr12 78912060 78912095 -64874360 + MADE1 DNA Mariner 46 80 0 215 353 0 109 chr12 78912791 78912947 -64873508 - MIR SINE MIR -68 140 2 29 0 0 0 chr12 78913263 78913292 -64873163 + AT_rich Low_complexity Low_complexity 1 29 0 2102 137 13 0 chr12 78913333 78913640 -64872815 - AluSx SINE Alu 0 312 2 24 0 0 0 chr12 78914035 78914059 -64872396 + AT_rich Low_complexity Low_complexity 1 24 0 4248 209 129 52 chr12 78915317 78916823 -64869632 + MER52A LTR ERV1 1 1622 -133 283 403 21 39 chr12 78916963 78917196 -64869259 - L2 LINE L2 -177 3095 2867 686 251 43 47 chr12 78917367 78917578 -64868877 + MER63A DNA MER1_type 1 210 0 327 301 136 30 chr12 78917650 78917849 -64868606 - Charlie8 DNA MER1_type -2152 265 46 1508 172 93 0 chr12 78918394 78918662 -64867793 + AluSx SINE Alu 1 293 -19 219 69 0 0 chr12 78919056 78919085 -64867370 + (CA)n Simple_repeat Simple_repeat 2 30 0 218 125 21 0 chr12 78921069 78921117 -64865338 + A-rich Low_complexity Low_complexity 4 52 0 187 273 182 13 chr12 78921292 78921369 -64865086 - L2 LINE L2 0 3272 3183 2093 98 34 0 chr12 78921847 78922142 -64864313 - AluSq SINE Alu -8 305 1 457 152 15 38 chr12 78923104 78923236 -64863219 + CT-rich Low_complexity Low_complexity 3 131 0 359 56 19 0 chr12 78923262 78923316 -64863139 + (TC)n Simple_repeat Simple_repeat 2 56 0 229 342 98 10 chr12 78923435 78923507 -64862948 + MIR SINE MIR 47 111 -151 3068 122 39 0 chr12 78923507 78923998 -64862457 + MER75 DNA T2_type 1 510 -4 229 342 98 10 chr12 78923998 78924118 -64862337 + MIR SINE MIR 111 256 -6 191 365 10 39 chr12 78924258 78924362 -64862093 - L2 LINE L2 -176 3096 2996 227 329 10 29 chr12 78924770 78924977 -64861478 - L1MEc LINE L1 -4538 1858 1656 622 163 24 12 chr12 78925027 78925193 -64861262 + CT-rich Low_complexity Low_complexity 1 168 0 1461 72 0 0 chr12 78925245 78925611 -64860844 + (G)n Simple_repeat Simple_repeat 1 366 0 537 215 0 0 chr12 78925613 78925762 -64860693 + G-rich Low_complexity Low_complexity 1 149 0 14764 229 27 6 chr12 78925870 78929837 -64856618 - L1P4 LINE L1 -579 6237 2204 1914 195 15 52 chr12 78929836 78930312 -64856143 + L1PA13 LINE L1 1626 2083 -4704 * 598 197 8 29 chr12 78930310 78930482 -64855973 - L1P4 LINE L1 -4572 2222 2048 * 315 362 116 41 chr12 78930581 78931047 -64855408 + L2 LINE L2 2722 3230 -83 2076 139 3 3 chr12 78931047 78931357 -64855098 - AluSx SINE Alu -2 310 1 315 362 116 41 chr12 78931357 78931392 -64855063 + L2 LINE L2 3230 3261 -52 326 233 138 43 chr12 78931539 78931655 -64854800 + L1ME LINE L1 5362 5488 -2554 228 299 13 0 chr12 78931753 78931830 -64854625 + L1ME LINE L1 5693 5770 -351 879 246 49 20 chr12 78932587 78932790 -64853665 + MER58A DNA MER1_type 1 209 -15 258 279 15 15 chr12 78934927 78934995 -64851460 - L3 LINE CR1 -64 1513 1446 224 305 0 74 chr12 78935169 78935264 -64851191 - L2 LINE L2 -1 3312 3225 344 262 156 0 chr12 78935696 78935818 -64850637 - MIR SINE MIR -30 232 92 31 26 0 0 chr12 78935925 78935963 -64850492 + AT_rich Low_complexity Low_complexity 1 38 0 759 293 29 117 chr12 78936063 78936644 -64849811 + MLT1G LTR MaLR 61 590 0 334 272 211 52 chr12 78937141 78937354 -64849101 + MIR SINE MIR 15 261 -1 266 198 0 50 chr12 78940386 78940510 -64845945 - MIR SINE MIR 0 262 91 3199 217 65 15 chr12 78940559 78941212 -64845243 + L1MA7 LINE L1 4549 5168 -1123 2292 175 21 12 chr12 78941212 78941634 -64844821 - MSTB LTR MaLR 0 426 1 3199 217 65 15 chr12 78941634 78942583 -64843872 + L1MA7 LINE L1 5168 6266 -25 456 183 42 21 chr12 78942614 78942756 -64843699 + MER96B DNA MER1_type? 52 196 -221 217 236 34 11 chr12 78942906 78942995 -64843460 + (TA)n Simple_repeat Simple_repeat 1 91 0 1958 193 88 12 chr12 78942995 78943395 -64843060 + Tigger1 DNA MER2_type 1 430 -1988 7965 121 29 27 chr12 78943667 78943902 -64842553 + Tigger1 DNA MER2_type 387 620 -1798 1659 174 39 4 chr12 78943902 78944183 -64842272 + AluJo SINE Alu 4 294 -18 7965 121 29 27 chr12 78944183 78945282 -64841173 + Tigger1 DNA MER2_type 620 1723 -695 218 41 61 20 chr12 78945537 78945586 -64840869 + (TA)n Simple_repeat Simple_repeat 1 51 0 1960 180 47 33 chr12 78945751 78946179 -64840276 - Tigger2a DNA MER2_type 0 434 1 6282 27 1 1 chr12 78946282 78947028 -64839427 - L1PA4 LINE L1 0 6155 5410 7184 58 4 0 chr12 78947028 78947942 -64838513 + L1P LINE L1 4061 4978 -1168 199 89 0 44 chr12 78947947 78947992 -64838463 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 3891 143 56 19 chr12 78948006 78948824 -64837631 + Tigger3b DNA MER2_type 80 942 -289 339 200 0 40 chr12 78949007 78949082 -64837373 - MIR SINE MIR -165 97 26 21 0 0 0 chr12 78949367 78949388 -64837067 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 78951682 78951721 -64834734 + AT_rich Low_complexity Low_complexity 1 39 0 259 224 35 0 chr12 78952265 78952323 -64834132 - L2 LINE L2 -20 3293 3234 23 0 0 0 chr12 78954049 78954072 -64832383 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 78954623 78954657 -64831798 + AT_rich Low_complexity Low_complexity 1 34 0 1866 136 22 0 chr12 78954660 78954933 -64831522 - AluSx SINE Alu -33 279 1 292 325 131 19 chr12 78954969 78955129 -64831326 - MIR SINE MIR -30 232 55 243 245 92 37 chr12 78955241 78955404 -64831051 - HAL1b LINE L1 -2 1346 1175 * 290 246 61 18 chr12 78955372 78955486 -64830969 - L1ME4a LINE L1 -169 5952 5834 1293 267 38 23 chr12 78956692 78957172 -64829283 + L1M4 LINE L1 4173 4659 -1487 822 298 90 44 chr12 78958467 78959189 -64827266 - L1M4 LINE L1 -2026 4120 3366 47 19 0 0 chr12 78959298 78959352 -64827103 + AT_rich Low_complexity Low_complexity 1 54 0 240 191 0 0 chr12 78959907 78959954 -64826501 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 5405 30 0 0 chr12 78961091 78961728 -64824727 + L1PA4 LINE L1 5515 6151 -4 394 304 43 7 chr12 78962472 78962610 -64823845 + MIR SINE MIR 94 236 -26 371 113 16 0 chr12 78962884 78962946 -64823509 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 681 214 7 28 chr12 78962962 78963107 -64823348 - AluJb SINE Alu -34 278 137 3681 241 17 28 chr12 78963984 78965198 -64821257 - L1 LINE L1 -1202 4944 3784 1860 206 27 23 chr12 78965204 78965857 -64820598 + L1M2 LINE L1 4900 5553 -743 1617 194 7 0 chr12 78966113 78966397 -64820058 - AluJb SINE Alu -24 288 3 841 329 91 25 chr12 78966575 78967615 -64818840 - L1MEc LINE L1 -5120 1276 168 25 31 0 0 chr12 78967694 78967726 -64818729 + AT_rich Low_complexity Low_complexity 1 32 0 2089 115 11 0 chr12 79069932 79070218 -64716237 - AluSq SINE Alu -24 289 1 720 220 0 7 chr12 79070224 79070365 -64716090 - FRAM SINE Alu -21 155 16 188 277 58 130 chr12 79070762 79071054 -64715401 + L2 LINE L2 2940 3210 -62 272 314 165 8 chr12 79071136 79071257 -64715198 - MIR3 SINE MIR -53 155 16 378 115 0 0 chr12 79071259 79071320 -64715135 + (TC)n Simple_repeat Simple_repeat 2 62 0 222 37 0 0 chr12 79071320 79071347 -64715108 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 296 51 20 chr12 79073487 79073585 -64712870 - L2 LINE L2 -2 3270 3170 24 0 0 0 chr12 79073691 79073715 -64712740 + AT_rich Low_complexity Low_complexity 1 24 0 287 354 94 36 chr12 79074621 79074844 -64711611 - L2 LINE L2 -159 3113 2878 385 315 42 24 chr12 79075276 79075441 -64711014 - MIR SINE MIR -39 223 56 2048 81 27 5 chr12 79075483 79075869 -64710586 - LTR7 LTR ERV1 -8 442 1 2185 4 0 0 chr12 79076506 79076782 -64709673 - AluYa5 SINE Alu 0 320 45 197 139 0 56 chr12 79077354 79077390 -64709065 - L2 LINE L2 -12 3260 3227 * 563 232 292 5 chr12 79077360 79077545 -64708910 - MIR SINE MIR -10 252 15 1449 208 95 2 chr12 79077586 79077968 -64708487 + L1ME1 LINE L1 5761 6334 0 1261 201 117 61 chr12 79079217 79079695 -64706760 - MLT1D LTR MaLR 0 505 1 839 316 126 38 chr12 79080030 79080667 -64705788 + L2 LINE L2 1878 2570 -744 1423 229 183 102 chr12 79080668 79081257 -64705198 + MLT1E2 LTR MaLR 1 637 -17 254 280 21 21 chr12 79081268 79081361 -64705094 + L2 LINE L2 2565 2657 -657 218 245 0 0 chr12 79083096 79083145 -64703310 + G-rich Low_complexity Low_complexity 1 49 0 209 167 37 0 chr12 79083497 79083551 -64702904 + (TA)n Simple_repeat Simple_repeat 2 57 0 435 181 29 6 chr12 79083562 79083733 -64702722 + (TA)n Simple_repeat Simple_repeat 2 176 0 30 93 0 0 chr12 79083751 79083837 -64702618 + AT_rich Low_complexity Low_complexity 1 86 0 1275 253 46 22 chr12 79083842 79084340 -64702115 - MLT2F LTR ERVL -64 599 1 186 43 0 0 chr12 79086328 79086351 -64700104 + (TG)n Simple_repeat Simple_repeat 2 24 0 255 152 0 0 chr12 79086460 79086506 -64699949 + (CA)n Simple_repeat Simple_repeat 2 47 0 365 260 130 31 chr12 79086510 79086702 -64699753 + L2 LINE L2 2741 2951 -363 1649 177 8 46 chr12 79086722 79087111 -64699344 - L1MB5 LINE L1 -18 6156 5783 466 291 64 108 chr12 79087115 79087459 -64698996 + L2 LINE L2 2941 3269 -3 2389 89 0 16 chr12 79089458 79089772 -64696683 - AluSg SINE Alu -1 309 1 1999 127 0 0 chr12 79089917 79090213 -64696242 - AluSx SINE Alu 0 306 11 430 17 34 0 chr12 79091781 79091840 -64694615 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 423 224 68 54 chr12 79092093 79092240 -64694215 + L2 LINE L2 3130 3278 -35 304 315 17 134 chr12 79092332 79092430 -64694025 + L2 LINE L2 2549 2604 -710 1743 82 0 135 chr12 79092430 79092733 -64693722 - AluSq SINE Alu -45 268 7 304 315 17 134 chr12 79092733 79092872 -64693583 + L2 LINE L2 2604 2758 -556 256 252 155 68 chr12 79093214 79093492 -64692963 + L2 LINE L2 2967 3268 -4 203 146 42 21 chr12 79095141 79095189 -64691266 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2129 116 7 10 chr12 79095298 79095600 -64690855 + AluSx SINE Alu 6 306 -6 21 71 0 0 chr12 79096404 79096446 -64690009 + AT_rich Low_complexity Low_complexity 1 42 0 240 322 67 72 chr12 79096917 79097097 -64689358 + MIR3 SINE MIR 30 208 0 221 333 20 20 chr12 79097322 79097421 -64689034 - MIR SINE MIR -83 179 81 1542 109 117 8 chr12 79097497 79097736 -64688719 + AluY SINE Alu 29 293 -18 261 139 0 0 chr12 79097762 79097805 -64688650 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2268 93 0 10 chr12 79099449 79099749 -64686706 + AluSx SINE Alu 1 297 -15 302 338 52 39 chr12 79100013 79100167 -64686288 + MIR SINE MIR 99 254 -8 477 238 8 63 chr12 79102550 79102676 -64683779 - L2 LINE L2 0 3313 3195 441 319 41 26 chr12 79102770 79103040 -64683415 - MLT1J LTR MaLR -4 507 234 2450 81 3 0 chr12 79103683 79103990 -64682465 + AluSg SINE Alu 1 308 -2 241 294 17 90 chr12 79104049 79104226 -64682229 - L2 LINE L2 -185 3087 2924 530 266 80 35 chr12 79104289 79104488 -64681967 + MIR SINE MIR 26 233 -29 1337 275 42 30 chr12 79104634 79105161 -64681294 + MLT1H LTR MaLR 13 545 -4 457 229 8 16 chr12 79105418 79105540 -64680915 + MER45A DNA AcHobo 52 172 -6 415 301 60 113 chr12 79106196 79106462 -64679993 - L2 LINE L2 -4 3268 3017 317 336 14 7 chr12 79106782 79106928 -64679527 - MARNA DNA Mariner -37 549 403 204 125 0 0 chr12 79107051 79107083 -64679372 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 236 151 9 chr12 79107192 79107298 -64679157 - MARNA DNA Mariner -226 360 240 1835 184 7 0 chr12 79107408 79107701 -64678754 + AluJo SINE Alu 5 299 -13 376 248 20 20 chr12 79107917 79108039 -64678416 - MIR SINE MIR -49 213 93 466 296 165 5 chr12 79109462 79109668 -64676787 + MIR SINE MIR 17 255 -7 354 247 33 27 chr12 79109786 79109936 -64676519 - MER63 DNA MER1_type -4 1056 906 264 59 0 0 chr12 79111376 79111410 -64675045 + (CA)n Simple_repeat Simple_repeat 2 35 0 2118 126 7 3 chr12 79111661 79111963 -64674492 + AluSq SINE Alu 1 303 -10 1629 156 4 16 chr12 79112234 79112490 -64673965 - AluSx SINE Alu -59 253 1 24 0 0 0 chr12 79113709 79113733 -64672722 + AT_rich Low_complexity Low_complexity 1 24 0 2595 65 3 0 chr12 79114158 79114465 -64671990 + AluSg SINE Alu 1 308 -2 182 307 13 40 chr12 79114680 79114755 -64671700 + L2 LINE L2 2215 2287 -1027 633 355 66 35 chr12 79114789 79115211 -64671244 + L2 LINE L2 2372 2806 -508 22 0 0 0 chr12 79115586 79115608 -64670847 + AT_rich Low_complexity Low_complexity 1 22 0 543 314 54 29 chr12 79116401 79117433 -64669022 + L1MEd LINE L1 415 1571 -4739 731 274 109 66 chr12 79117595 79118679 -64667776 + L1M4 LINE L1 4104 5233 -913 259 319 43 0 chr12 79118680 79118774 -64667681 + L1P5 LINE L1 5434 5531 -625 3752 72 37 0 chr12 79119259 79119773 -64666682 - MER41A LTR ERV1 0 554 22 2384 91 3 0 chr12 79119775 79120083 -64666372 + AluSq SINE Alu 1 309 -4 253 67 0 0 chr12 79120105 79120135 -64666320 - MER41B LTR ERV1 -599 36 7 185 265 118 29 chr12 79120172 79120274 -64666181 + L2 LINE L2 2859 2969 -344 217 284 68 0 chr12 79120552 79120626 -64665829 + L2 LINE L2 1965 2043 -1271 472 220 29 80 chr12 79120626 79120798 -64665657 - MER45 DNA AcHobo 0 1581 24 804 270 226 34 chr12 79120805 79121694 -64664761 + L2 LINE L2 2037 3133 -180 279 0 0 0 chr12 79121713 79121744 -64664711 + (CA)n Simple_repeat Simple_repeat 1 31 0 253 214 143 20 chr12 79122117 79122215 -64664240 - L1ME4a LINE L1 -30 6091 5982 796 279 33 21 chr12 79122682 79122922 -64663533 - MIR SINE MIR -14 248 6 263 232 85 0 chr12 79123033 79123115 -64663340 - L1ME4a LINE L1 -502 5619 5531 342 264 102 48 chr12 79123154 79123321 -64663134 - L1ME4a LINE L1 -2360 5448 5273 1906 146 24 7 chr12 79123590 79123884 -64662571 - AluJb SINE Alu -13 299 1 308 266 100 50 chr12 79123910 79124099 -64662356 + MIR SINE MIR 69 262 0 279 306 129 38 chr12 79124420 79124781 -64661674 - L2 LINE L2 -217 3055 2626 1707 166 91 30 chr12 79125749 79126189 -64660266 + Charlie4a DNA MER1_type 37 503 -5 252 322 11 0 chr12 79126192 79126282 -64660173 - MARNA DNA Mariner -410 176 86 557 198 93 39 chr12 79126315 79126497 -64659958 + MIR SINE MIR 71 262 0 180 287 275 6 chr12 79126720 79126887 -64659568 + MIR SINE MIR 22 233 -29 1117 121 30 0 chr12 79127493 79127659 -64658796 - AluSg/x SINE Alu 0 312 142 1325 148 5 0 chr12 79127659 79127862 -64658593 + AluSg/x SINE Alu 85 288 -24 184 244 0 0 chr12 79128265 79128310 -64658145 + MIR3 SINE MIR 159 203 -5 276 268 113 52 chr12 79128567 79128664 -64657791 + MIR SINE MIR 2 104 -158 21 36 0 0 chr12 79129381 79129409 -64657046 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr12 79129885 79129918 -64656537 + AT_rich Low_complexity Low_complexity 1 33 0 199 281 88 0 chr12 79130695 79130752 -64655703 + MIR SINE MIR 83 144 -118 28 48 0 0 chr12 79131131 79131173 -64655282 + AT_rich Low_complexity Low_complexity 1 42 0 255 250 22 0 chr12 79131966 79132058 -64654397 + (TTAA)n Simple_repeat Simple_repeat 4 97 0 21 36 0 0 chr12 79132490 79132518 -64653937 + AT_rich Low_complexity Low_complexity 1 28 0 249 158 298 0 chr12 79132701 79132758 -64653697 + MADE1 DNA Mariner 2 75 -5 22 80 0 0 chr12 79133326 79133376 -64653079 + AT_rich Low_complexity Low_complexity 1 50 0 693 240 40 11 chr12 79134057 79134232 -64652223 - MIR SINE MIR -12 250 71 21 36 0 0 chr12 79136936 79136964 -64649491 + AT_rich Low_complexity Low_complexity 1 28 0 323 314 73 29 chr12 79136966 79137103 -64649352 - L3 LINE CR1 -379 1198 1056 372 258 236 0 chr12 79139244 79139422 -64647033 + MER112 DNA MER1_type 30 249 -11 317 328 60 22 chr12 79140537 79140671 -64645784 - MIR SINE MIR -42 220 82 668 253 11 5 chr12 79140811 79140997 -64645458 + MER5A DNA MER1_type 1 187 -2 1805 141 20 20 chr12 79141172 79141470 -64644985 - AluJb SINE Alu -6 306 9 1556 281 53 46 chr12 79141571 79142326 -64644129 + L1ME3A LINE L1 5315 6081 -89 180 264 0 19 chr12 79143544 79143597 -64642858 - L2 LINE L2 0 3313 3262 201 190 207 0 chr12 79144370 79144428 -64642027 - MIR SINE MIR -155 107 38 188 330 181 11 chr12 79144884 79144978 -64641477 - L3b LINE CR1 -130 1453 1344 28 0 0 0 chr12 79145163 79145191 -64641264 + AT_rich Low_complexity Low_complexity 1 28 0 29 84 0 0 chr12 79145806 79145877 -64640578 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr12 79145989 79146014 -64640441 + AT_rich Low_complexity Low_complexity 1 25 0 443 268 79 79 chr12 79146106 79146147 -64640308 + L1ME LINE L1 5294 5334 -828 2226 108 0 0 chr12 79146147 79146444 -64640011 + AluY SINE Alu 3 299 -12 443 268 79 79 chr12 79146444 79146467 -64639988 + L1ME LINE L1 5334 5356 -806 1775 199 42 12 chr12 79146467 79146836 -64639619 + MLT2D LTR ERVL 1 384 -30 351 0 0 0 chr12 79146836 79146875 -64639580 + (CA)n Simple_repeat Simple_repeat 2 40 0 1775 199 42 12 chr12 79146875 79146907 -64639548 + MLT2D LTR ERVL 384 414 0 443 268 79 79 chr12 79146907 79147210 -64639245 + L1ME LINE L1 5355 5662 -500 426 256 232 43 chr12 79147265 79147472 -64638983 + MIR SINE MIR 13 258 -4 272 248 38 19 chr12 79147472 79147577 -64638878 + L1ME LINE L1 5708 5814 -307 328 258 0 0 chr12 79147701 79147767 -64638688 - L2 LINE L2 0 3313 3248 225 65 0 0 chr12 79147978 79148009 -64638446 + (TG)n Simple_repeat Simple_repeat 2 32 0 1925 136 4 0 chr12 79148301 79148580 -64637875 - AluSx SINE Alu -15 297 18 43422 48 1 0 chr12 79149020 79155172 -64631283 - L1PA4 LINE L1 -1 6154 1 2005 113 21 79 chr12 79155179 79155560 -64630895 - L1PA14 LINE L1 -1 6160 5802 21 0 0 0 chr12 79155791 79155812 -64630643 + AT_rich Low_complexity Low_complexity 1 21 0 226 314 116 0 chr12 79156056 79156142 -64630313 + MIR3 SINE MIR 65 160 -48 231 214 337 0 chr12 79156145 79156234 -64630221 - MER5A DNA MER1_type -3 186 68 336 182 0 15 chr12 79156234 79156300 -64630155 + MER20 DNA MER1_type 155 219 0 25 0 0 0 chr12 79156394 79156419 -64630036 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr12 79157090 79157130 -64629325 + AT_rich Low_complexity Low_complexity 1 40 0 242 268 36 0 chr12 79157809 79157865 -64628590 - MLT1K LTR MaLR -284 304 247 204 40 0 0 chr12 79157928 79157953 -64628502 + (CA)n Simple_repeat Simple_repeat 2 26 0 206 254 55 0 chr12 79158015 79158125 -64628330 + (TA)n Simple_repeat Simple_repeat 2 117 0 1170 184 197 7 chr12 79158292 79158597 -64627858 + MLT1F LTR MaLR 180 542 0 292 297 79 0 chr12 79158752 79158853 -64627602 - MIR3 SINE MIR -18 190 82 25 0 0 0 chr12 79158904 79158929 -64627526 + AT_rich Low_complexity Low_complexity 1 25 0 242 258 0 15 chr12 79158932 79158998 -64627457 + (TA)n Simple_repeat Simple_repeat 1 65 0 1579 46 0 0 chr12 79158998 79159192 -64627263 - L1MA1 LINE L1 -23 6279 6086 200 309 211 23 chr12 79159312 79159487 -64626968 - MIR SINE MIR -1 261 54 216 0 0 0 chr12 79159673 79159697 -64626758 + (TC)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr12 79159696 79159720 -64626735 + (CA)n Simple_repeat Simple_repeat 1 24 0 196 267 58 125 chr12 79159747 79159867 -64626588 + MIR SINE MIR 76 187 -75 473 268 142 49 chr12 79160192 79160559 -64625896 + MLT1G LTR MaLR 1 375 -215 225 147 0 0 chr12 79160955 79160989 -64625466 + Tigger5 DNA MER2_type 1 34 -2289 1697 122 4 11 chr12 79161014 79161276 -64625179 + Tigger5 DNA MER2_type 2064 2323 0 303 243 78 19 chr12 79161288 79161391 -64625064 - L2 LINE L2 -82 3231 3123 3218 110 40 18 chr12 79161790 79162070 -64624385 - L1P4 LINE L1 -411 5755 5483 1980 120 0 21 chr12 79162070 79162389 -64624066 + AluSq SINE Alu 1 313 0 3218 110 40 18 chr12 79162389 79162725 -64623730 - L1P4 LINE L1 -683 5483 5116 2192 157 28 2 chr12 79162725 79163118 -64623337 + L1PA16 LINE L1 5753 6156 -10 298 314 68 17 chr12 79163338 79163456 -64622999 + L2 LINE L2 3190 3313 0 395 256 23 0 chr12 79163458 79163544 -64622911 + MIR SINE MIR 27 114 -148 333 0 0 0 chr12 79163649 79163686 -64622769 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 147 0 0 chr12 79163689 79163723 -64622732 + (TA)n Simple_repeat Simple_repeat 2 35 0 227 348 0 0 chr12 79163783 79163872 -64622583 - L1MC4 LINE L1 -1340 6702 6614 231 114 0 0 chr12 79163881 79163925 -64622530 - LTR66 LTR ERVL -172 438 395 230 114 0 0 chr12 79163891 79163935 -64622520 + LTR66 LTR ERVL 395 438 -172 * 21 36 0 0 chr12 79164181 79164209 -64622246 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr12 79164562 79164591 -64621864 + AT_rich Low_complexity Low_complexity 1 29 0 358 303 0 41 chr12 79165739 79165884 -64620571 - L2 LINE L2 -1 3312 3174 365 283 20 10 chr12 79166026 79166125 -64620330 + MIR3 SINE MIR 82 181 -27 323 315 42 30 chr12 79166828 79166993 -64619462 + MLT1J LTR MaLR 234 400 -111 358 331 35 7 chr12 79167580 79167722 -64618733 + MIR SINE MIR 29 174 -88 398 227 0 0 chr12 79167965 79168031 -64618424 + L2 LINE L2 3248 3313 0 25 0 0 0 chr12 79168101 79168126 -64618329 + AT_rich Low_complexity Low_complexity 1 25 0 353 246 9 27 chr12 79168842 79168952 -64617503 - MLT1J LTR MaLR -18 493 386 2240 113 3 0 chr12 79169120 79169421 -64617034 - AluSp SINE Alu -11 302 1 3782 133 94 3 chr12 79169606 79170258 -64616197 + MER50 LTR ERV1 1 711 -23 2707 91 112 5 chr12 79170328 79170748 -64615707 + MER4C LTR ERV1 1 465 0 311 316 115 11 chr12 79172105 79172279 -64614176 - L1ME LINE L1 -391 5754 5563 494 274 109 66 chr12 79172386 79173470 -64612985 - L1ME LINE L1 -913 5216 4087 397 317 74 45 chr12 79173632 79174664 -64611791 - L1MEd LINE L1 -4739 1571 415 22 0 0 0 chr12 79175457 79175479 -64610976 + AT_rich Low_complexity Low_complexity 1 22 0 654 351 79 34 chr12 79175854 79176270 -64610185 - L2 LINE L2 -508 2806 2372 182 307 13 40 chr12 79176304 79176379 -64610076 - L2 LINE L2 -1027 2287 2215 2586 68 3 0 chr12 79176594 79176901 -64609554 - AluSg SINE Alu -2 308 1 24 0 0 0 chr12 79177326 79177350 -64609105 + AT_rich Low_complexity Low_complexity 1 24 0 1629 156 4 16 chr12 79178569 79178825 -64607630 + AluSx SINE Alu 1 253 -59 2118 126 7 3 chr12 79179096 79179398 -64607057 - AluSq SINE Alu -10 303 1 264 59 0 0 chr12 79179649 79179683 -64606772 + (TG)n Simple_repeat Simple_repeat 2 35 0 354 247 33 27 chr12 79181123 79181273 -64605182 + MER63 DNA MER1_type 908 1058 -4 466 296 165 5 chr12 79181391 79181597 -64604858 - MIR SINE MIR -7 255 17 376 248 20 20 chr12 79183019 79183141 -64603314 + MIR SINE MIR 93 213 -49 1873 182 7 0 chr12 79183357 79183654 -64602801 - AluJo SINE Alu -13 299 1 2010 123 0 0 chr12 79183799 79184095 -64602360 - AluSx SINE Alu 0 306 11 523 0 30 0 chr12 79185662 79185729 -64600726 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 423 224 68 54 chr12 79185982 79186129 -64600326 + L2 LINE L2 3130 3278 -35 304 315 17 134 chr12 79186221 79186319 -64600136 + L2 LINE L2 2549 2604 -710 1743 82 0 135 chr12 79186319 79186622 -64599833 - AluSq SINE Alu -45 268 7 304 315 17 134 chr12 79186622 79186761 -64599694 + L2 LINE L2 2604 2758 -556 376 248 20 20 chr12 79188496 79188618 -64597837 + MIR SINE MIR 93 213 -49 1835 184 7 0 chr12 79188832 79189125 -64597330 - AluJo SINE Alu -13 299 5 291 236 151 9 chr12 79189235 79189341 -64597114 + MARNA DNA Mariner 240 360 -226 204 125 0 0 chr12 79189450 79189482 -64596973 + (GA)n Simple_repeat Simple_repeat 1 32 0 317 336 14 7 chr12 79189605 79189751 -64596704 + MARNA DNA Mariner 403 549 -37 410 304 60 113 chr12 79190072 79190338 -64596117 + L2 LINE L2 3017 3268 -4 457 229 8 16 chr12 79190994 79191116 -64595339 - MER45A DNA AcHobo -6 172 52 1324 275 42 30 chr12 79191373 79191900 -64594555 - MLT1H LTR MaLR -4 545 13 530 266 80 35 chr12 79192046 79192245 -64594210 - MIR SINE MIR -29 233 26 241 294 17 90 chr12 79192308 79192485 -64593970 + L2 LINE L2 2924 3087 -185 2450 81 3 0 chr12 79192544 79192851 -64593604 - AluSg SINE Alu -2 308 1 441 319 41 26 chr12 79193494 79193764 -64592691 + MLT1J LTR MaLR 234 507 -4 477 238 8 63 chr12 79193858 79193984 -64592471 + L2 LINE L2 3195 3313 0 302 338 52 39 chr12 79196367 79196521 -64589934 - MIR SINE MIR -8 254 99 2268 93 0 10 chr12 79196784 79197084 -64589371 - AluSx SINE Alu -15 297 1 261 139 0 0 chr12 79198725 79198768 -64587687 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1542 109 117 8 chr12 79198794 79199033 -64587422 - AluY SINE Alu -18 293 29 221 333 20 20 chr12 79199109 79199208 -64587247 + MIR SINE MIR 81 179 -83 240 322 67 72 chr12 79199433 79199613 -64586842 - MIR3 SINE MIR 0 208 30 21 71 0 0 chr12 79200084 79200126 -64586329 + AT_rich Low_complexity Low_complexity 1 42 0 2129 116 7 10 chr12 79200929 79201231 -64585224 - AluSx SINE Alu -6 306 6 203 146 42 21 chr12 79201340 79201388 -64585067 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 256 252 155 68 chr12 79203037 79203315 -64583140 - L2 LINE L2 -4 3268 2967 304 315 17 134 chr12 79203657 79203796 -64582659 - L2 LINE L2 -556 2758 2657 1743 82 0 135 chr12 79203796 79204099 -64582356 + AluSq SINE Alu 7 268 -45 304 315 17 134 chr12 79204099 79204197 -64582258 - L2 LINE L2 -657 2657 2549 423 224 68 54 chr12 79204289 79204436 -64582019 - L2 LINE L2 -35 3278 3130 430 17 34 0 chr12 79204689 79204748 -64581707 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2000 127 0 0 chr12 79206316 79206612 -64579843 + AluSx SINE Alu 11 306 0 1504 160 26 16 chr12 79206757 79207063 -64579392 + AluSg SINE Alu 1 309 -1 466 291 64 108 chr12 79209063 79209407 -64577048 - L2 LINE L2 -3 3269 2941 1649 177 8 46 chr12 79209411 79209800 -64576655 + L1MB5 LINE L1 5783 6156 -18 365 260 130 31 chr12 79209820 79210012 -64576443 - L2 LINE L2 -363 2951 2741 255 152 0 0 chr12 79210016 79210062 -64576393 + (TG)n Simple_repeat Simple_repeat 2 47 0 186 43 0 0 chr12 79210171 79210194 -64576261 + (CA)n Simple_repeat Simple_repeat 2 24 0 302 301 188 0 chr12 79211475 79211608 -64574847 - MIR SINE MIR -3 259 102 918 176 37 59 chr12 79211666 79211853 -64574602 - AluJo SINE Alu -22 290 108 679 204 22 7 chr12 79211860 79211997 -64574458 - FLAM_C SINE Alu 0 143 5 954 276 53 38 chr12 79212562 79212903 -64573552 + L2 LINE L2 2968 3313 0 256 178 65 0 chr12 79212998 79213105 -64573350 + MER113 DNA MER1_type? 89 202 -319 227 356 0 0 chr12 79213272 79213345 -64573110 - MIR SINE MIR -57 151 79 378 304 27 0 chr12 79214127 79214239 -64572216 + MIR3 SINE MIR 84 198 -10 2083 161 0 0 chr12 79214688 79214998 -64571457 + AluSx SINE Alu 3 312 0 252 310 85 39 chr12 79215168 79215297 -64571158 + MIR SINE MIR 10 144 -118 328 141 16 0 chr12 79215399 79215463 -64570992 + AluS SINE Alu 226 290 -11 1724 124 0 0 chr12 79215466 79215719 -64570736 + AluSc SINE Alu 50 302 0 831 217 52 109 chr12 79215719 79216185 -64570270 - LTR37B LTR ERV1 -23 445 7 417 261 45 57 chr12 79217123 79217211 -64569244 + LTR16A LTR ERVL 239 326 -124 812 199 193 0 chr12 79217211 79217392 -64569063 - MER20 DNA MER1_type 0 219 4 417 261 45 57 chr12 79217392 79217479 -64568976 + LTR16A LTR ERVL 326 412 -38 240 174 104 26 chr12 79217510 79217625 -64568830 - Charlie7 DNA MER1_type -62 2550 2427 2090 129 13 3 chr12 79218090 79218393 -64568062 + AluJb SINE Alu 1 306 -6 2236 99 0 20 chr12 79218799 79219102 -64567353 + AluSc SINE Alu 1 297 -12 539 283 65 42 chr12 79219302 79219610 -64566845 + L1ME4a LINE L1 3319 3633 -2513 354 284 68 27 chr12 79219621 79219769 -64566686 + L1ME4a LINE L1 5316 5469 -652 344 261 86 74 chr12 79219798 79220192 -64566263 + L1ME4a LINE L1 5535 5933 -188 2749 89 11 3 chr12 79220239 79220611 -64565844 + THE1C LTR MaLR 1 375 0 28 48 0 0 chr12 79220885 79220927 -64565528 + AT_rich Low_complexity Low_complexity 1 42 0 1882 129 0 21 chr12 79220929 79221209 -64565246 - AluJb SINE Alu -38 274 1 1159 336 61 14 chr12 79222522 79223187 -64563268 + L2 LINE L2 2596 3308 -5 271 270 18 72 chr12 79223218 79223283 -64563172 - LTR67 LTR ERVL -14 543 485 1432 218 85 63 chr12 79223283 79223788 -64562667 + MLT2B1 LTR ERVL 5 520 0 271 270 18 72 chr12 79223788 79223833 -64562622 - LTR67 LTR ERVL -72 485 439 207 0 0 0 chr12 79224122 79224145 -64562310 + (A)n Simple_repeat Simple_repeat 1 23 0 262 288 61 0 chr12 79224582 79224683 -64561772 + MIR SINE MIR 45 154 -63 1062 188 44 113 chr12 79224904 79225293 -64561162 - MLT1A1 LTR MaLR -2 363 2 619 198 6 70 chr12 79226530 79226687 -64559768 + MLT1A1 LTR MaLR 4 150 -215 1987 53 0 20 chr12 79226693 79226939 -64559516 + AluY SINE Alu 55 295 -16 477 0 0 0 chr12 79226939 79226992 -64559463 + (TA)n Simple_repeat Simple_repeat 2 54 0 1348 94 0 0 chr12 79226992 79227162 -64559293 + AluSq SINE Alu 132 301 -12 873 270 138 34 chr12 79227219 79227323 -64559132 - L2 LINE L2 -14 3299 3207 506 114 13 0 chr12 79227323 79227402 -64559053 - MADE1 DNA Mariner 0 80 1 873 270 138 34 chr12 79227402 79227675 -64558780 - L2 LINE L2 -106 3207 2883 1554 227 272 8 chr12 79227677 79228192 -64558263 - L2 LINE L2 -555 2759 2109 252 0 0 0 chr12 79228692 79228720 -64557735 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 79229273 79229296 -64557159 + AT_rich Low_complexity Low_complexity 1 23 0 620 267 107 5 chr12 79229324 79229511 -64556944 - MIR SINE MIR -55 207 2 1850 175 49 3 chr12 79229622 79229971 -64556484 + MLT1A1 LTR MaLR 1 365 0 2214 122 3 0 chr12 79230085 79230380 -64556075 - AluSp SINE Alu -15 298 3 1237 205 29 0 chr12 79230778 79231051 -64555404 + L1MB5 LINE L1 5894 6174 0 292 351 0 0 chr12 79232348 79232425 -64554030 - L3 LINE CR1 -97 1480 1404 1952 120 120 27 chr12 79232584 79232917 -64553538 + THE1B LTR MaLR 1 364 0 966 289 8 11 chr12 79233068 79233334 -64553121 - L3 LINE CR1 -234 1343 1079 636 244 76 5 chr12 79233359 79233556 -64552899 - MIR SINE MIR 0 262 52 1210 300 31 52 chr12 79233722 79234590 -64551865 - L2 LINE L2 0 3313 2472 515 332 23 33 chr12 79234633 79234847 -64551608 - MIR SINE MIR -27 235 24 190 293 171 23 chr12 79235019 79235282 -64551173 + L3 LINE CR1 1066 1367 -210 21 36 0 0 chr12 79235533 79235561 -64550894 + AT_rich Low_complexity Low_complexity 1 28 0 646 340 28 4 chr12 79236692 79236945 -64549510 - MIR SINE MIR -1 261 3 267 31 0 0 chr12 79237665 79237697 -64548758 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1868 144 25 0 chr12 79237711 79237989 -64548466 - AluSx SINE Alu -27 285 1 452 322 6 6 chr12 79238795 79238975 -64547480 - MLT1L LTR MaLR 0 615 436 213 311 0 33 chr12 79240514 79240575 -64545880 - L3 LINE CR1 -3 1574 1516 257 241 48 36 chr12 79240623 79240706 -64545749 + MER5A DNA MER1_type 56 139 -50 196 275 8 137 chr12 79241131 79241262 -64545193 - L2 LINE L2 -6 3307 3194 667 303 124 42 chr12 79241553 79241959 -64544496 - L2 LINE L2 -1204 2110 1638 1856 130 4 0 chr12 79241959 79242220 -64544235 - AluY SINE Alu -17 294 33 667 303 124 42 chr12 79242220 79242410 -64544045 - L2 LINE L2 -1676 1638 1465 229 327 11 21 chr12 79242557 79242669 -64543786 + CT-rich Low_complexity Low_complexity 2 188 0 22 0 0 0 chr12 79242905 79242927 -64543528 + AT_rich Low_complexity Low_complexity 1 22 0 1156 266 48 76 chr12 79244707 79245242 -64541213 - L2 LINE L2 0 3313 2779 24 0 0 0 chr12 79247430 79247454 -64539001 + AT_rich Low_complexity Low_complexity 1 24 0 267 275 77 11 chr12 79247832 79247923 -64538532 + L2 LINE L2 3214 3310 -3 266 50 25 0 chr12 79247996 79248036 -64538419 + (TA)n Simple_repeat Simple_repeat 1 41 0 385 340 19 13 chr12 79250328 79250484 -64535971 - MLT1K LTR MaLR -429 159 3 2187 131 0 0 chr12 79251763 79252069 -64534386 - AluSx SINE Alu -6 306 1 765 175 108 45 chr12 79252165 79252451 -64534004 - MER33 DNA MER1_type 0 324 21 369 0 0 0 chr12 79253155 79253196 -64533259 + (CA)n Simple_repeat Simple_repeat 2 42 0 1067 195 82 14 chr12 79253450 79253949 -64532506 - MLT1E1 LTR MaLR 0 654 3 337 286 18 42 chr12 79254192 79254360 -64532095 + LTR67 LTR ERVL 354 517 -40 282 56 0 0 chr12 79255237 79255273 -64531182 + (CA)n Simple_repeat Simple_repeat 2 37 0 247 331 40 24 chr12 79255454 79255578 -64530877 + MIR3 SINE MIR 47 172 -36 1995 164 0 0 chr12 79256348 79256652 -64529803 + AluSx SINE Alu 1 304 -8 369 285 138 47 chr12 79256945 79257208 -64529247 + MLT1J LTR MaLR 246 613 -2 734 297 75 48 chr12 79257303 79257741 -64528714 + MLT1J2 LTR MaLR 1 450 0 1481 191 45 131 chr12 79257926 79258476 -64527979 + MLT1D LTR MaLR 3 505 0 398 387 52 29 chr12 79258732 79259114 -64527341 - L2 LINE L2 -445 2869 2479 286 263 0 0 chr12 79259690 79259747 -64526708 + L2 LINE L2 3245 3301 -12 217 231 259 19 chr12 79259733 79259841 -64526614 - MIR SINE MIR -6 256 123 * 397 333 30 30 chr12 79259912 79260080 -64526375 - L2 LINE L2 -976 2338 2171 207 114 0 0 chr12 79260148 79260183 -64526272 + (CA)n Simple_repeat Simple_repeat 2 36 0 377 279 7 52 chr12 79260194 79260348 -64526107 + MER112 DNA MER1_type 108 254 -6 320 284 83 65 chr12 79260368 79260597 -64525858 + Charlie8 DNA MER1_type 2 234 -2183 1721 187 5 65 chr12 79261559 79261781 -64524674 - MLT1A1 LTR MaLR 0 365 174 1846 111 4 0 chr12 79261781 79262025 -64524430 - AluSq SINE Alu -14 299 55 1721 187 5 65 chr12 79262025 79262187 -64524268 - MLT1A1 LTR MaLR -191 174 4 1062 188 44 113 chr12 79263424 79263813 -64522642 + MLT1A1 LTR MaLR 2 363 -2 262 288 61 0 chr12 79264034 79264135 -64522320 - MIR SINE MIR -63 145 45 207 0 0 0 chr12 79264572 79264595 -64521860 + (T)n Simple_repeat Simple_repeat 1 23 0 304 278 35 56 chr12 79264853 79264930 -64521525 + LTR67 LTR ERVL 403 477 -80 1432 218 85 63 chr12 79264930 79265435 -64521020 - MLT2B1 LTR ERVL 0 520 5 304 278 35 56 chr12 79265435 79265501 -64520954 + LTR67 LTR ERVL 477 543 -14 1159 334 59 14 chr12 79265532 79266199 -64520256 - L2 LINE L2 -5 3308 2596 1882 129 0 21 chr12 79267512 79267792 -64518663 + AluJb SINE Alu 1 274 -38 28 48 0 0 chr12 79267794 79267836 -64518619 + AT_rich Low_complexity Low_complexity 1 42 0 2737 89 11 3 chr12 79268110 79268482 -64517973 - THE1C LTR MaLR 0 375 1 433 256 86 74 chr12 79268529 79268923 -64517532 - L1ME4a LINE L1 -188 5933 5535 230 250 102 21 chr12 79268951 79269088 -64517367 - L1ME4a LINE L1 -694 5457 5328 277 282 64 44 chr12 79269111 79269409 -64517046 - L1ME4a LINE L1 -2513 3633 3330 2250 99 0 17 chr12 79269619 79269921 -64516534 - AluSc SINE Alu -12 297 1 2065 129 13 3 chr12 79270329 79270632 -64515823 - AluJb SINE Alu -6 306 1 228 289 31 31 chr12 79271010 79271107 -64515348 + Charlie7 DNA MER1_type 5 101 -2511 * 267 174 104 26 chr12 79271097 79271212 -64515243 + Charlie7 DNA MER1_type 2427 2550 -62 474 261 45 57 chr12 79271243 79271330 -64515125 - LTR16A LTR ERVL -38 412 326 815 199 193 0 chr12 79271330 79271511 -64514944 + MER20 DNA MER1_type 4 219 0 474 261 45 57 chr12 79271511 79271599 -64514856 - LTR16A LTR ERVL -124 326 239 1428 143 16 0 chr12 79271854 79272105 -64514350 - L1MA7 LINE L1 -2 6289 6035 320 283 106 56 chr12 79272865 79273063 -64513392 - L1ME3A LINE L1 -1 6169 5962 2338 279 67 16 chr12 79273108 79274545 -64511910 - L1ME3A LINE L1 -202 5968 4441 21 36 0 0 chr12 79274571 79274599 -64511856 + AT_rich Low_complexity Low_complexity 1 28 0 3472 104 0 38 chr12 79274599 79275154 -64511301 - L1MA3 LINE L1 -1 6304 5771 16357 83 7 2 chr12 79275158 79278228 -64508227 - L1PA7 LINE L1 -13 6141 3085 3226 130 0 4 chr12 79278245 79278754 -64507701 - L1PA14 LINE L1 -7 6154 5648 1848 91 34 0 chr12 79278770 79278828 -64507627 - L1PB1 LINE L1 -156 5995 5938 14744 167 29 6 chr12 79278828 79278972 -64507483 - L1PBa LINE L1 -360 6653 6514 432 0 0 0 chr12 79278972 79279020 -64507435 + (TA)n Simple_repeat Simple_repeat 1 48 0 14744 167 29 6 chr12 79279020 79284072 -64502383 - L1PBa LINE L1 -499 6514 1311 884 147 39 13 chr12 79284079 79284235 -64502220 - L1PBa LINE L1 -5709 1154 995 1113 134 0 35 chr12 79284235 79284436 -64502019 - L1PBa LINE L1 -6669 194 1 680 277 36 43 chr12 79284446 79284749 -64501706 - L1MDa LINE L1 -1870 4670 4370 603 194 9 9 chr12 79284823 79284931 -64501524 - FLAM_A SINE Alu -34 108 1 4070 237 68 64 chr12 79284935 79285200 -64501255 - L1MDa LINE L1 -2168 4372 4109 2368 105 0 0 chr12 79285200 79285505 -64500950 + AluSx SINE Alu 1 305 -7 4070 237 68 64 chr12 79285505 79287526 -64498929 - L1MDa LINE L1 -2431 4109 2112 1828 178 13 0 chr12 79287712 79288010 -64498445 - AluJb SINE Alu -10 302 1 194 196 0 78 chr12 79288200 79288251 -64498204 + L2 LINE L2 3266 3312 -1 1663 205 109 30 chr12 79289498 79289966 -64496489 - MLT1D LTR MaLR 0 505 1 2112 195 45 72 chr12 79289975 79290504 -64495951 - MLT2B1 LTR ERVL -5 515 1 24 32 0 0 chr12 79291219 79291250 -64495205 + AT_rich Low_complexity Low_complexity 1 31 0 2067 125 0 0 chr12 79291859 79292146 -64494309 + AluSx SINE Alu 3 289 -23 21 0 0 0 chr12 79292146 79292167 -64494288 + AT_rich Low_complexity Low_complexity 1 21 0 547 75 0 25 chr12 79292266 79292346 -64494109 + Alu SINE Alu 228 305 -7 38 22 0 0 chr12 79296437 79296482 -64489973 + AT_rich Low_complexity Low_complexity 1 45 0 186 40 0 0 chr12 79296482 79296490 -64489965 + (TA)n Simple_repeat Simple_repeat 1 8 -17 2219 118 0 0 chr12 79296490 79296787 -64489668 + AluSx SINE Alu 1 297 -15 186 40 0 0 chr12 79296787 79296803 -64489652 + (TA)n Simple_repeat Simple_repeat 7 25 0 409 204 21 0 chr12 79297478 79297493 -64488962 - L1MA4A LINE L1 -24 6279 6265 521 207 78 0 chr12 79297493 79297609 -64488846 - L1PB4 LINE L1 -23 6133 6009 267 224 34 116 chr12 79297646 79297793 -64488662 + HsTC2 DNA Tc2 53 187 -1711 269 358 68 18 chr12 79297966 79298187 -64488268 + HsTC2 DNA Tc2 550 781 -1117 724 181 203 33 chr12 79298966 79299148 -64487307 + MER20 DNA MER1_type 6 218 -1 2097 163 13 0 chr12 79299702 79300100 -64486355 + L1PA15 LINE L1 4949 5351 -795 2885 131 9 0 chr12 79300121 79300570 -64485885 - L1PA14 LINE L1 -2 6159 5707 255 189 0 19 chr12 79300570 79300623 -64485832 + L1PA15 LINE L1 5985 6036 -129 227 271 0 0 chr12 79300875 79300934 -64485521 + LTR67 LTR ERVL 494 552 -5 281 300 209 13 chr12 79301210 79301517 -64484938 + L2 LINE L2 2944 3310 -3 303 335 94 59 chr12 79301879 79302186 -64484269 - L2 LINE L2 -20 3252 2935 191 149 0 164 chr12 79304522 79304589 -64481866 - L2 LINE L2 -2 3311 3256 21 0 0 0 chr12 79305042 79305063 -64481392 + AT_rich Low_complexity Low_complexity 1 21 0 1094 271 177 50 chr12 79305493 79306359 -64480096 - L2 LINE L2 -5 3308 2305 2220 131 11 37 chr12 79306810 79307184 -64479271 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr12 79308196 79308221 -64478234 + AT_rich Low_complexity Low_complexity 1 25 0 4027 170 58 4 chr12 79309329 79310024 -64476431 - MER44D DNA MER2_type -1 604 1 198 321 0 0 chr12 79310201 79310257 -64476198 - L2 LINE L2 -56 3216 3161 2315 166 13 0 chr12 79310257 79310648 -64475807 - MER57A LTR ERV1 0 403 8 1381 153 0 0 chr12 79311193 79311402 -64475053 - AluJb SINE Alu -17 295 87 244 229 0 48 chr12 79311557 79311640 -64474815 + GA-rich Low_complexity Low_complexity 1 79 0 731 128 0 0 chr12 79312236 79312338 -64474117 + AluSp/q SINE Alu 157 258 -55 592 316 45 16 chr12 79313022 79313266 -64473189 - MIR SINE MIR 0 262 12 1808 184 33 17 chr12 79313399 79313758 -64472697 + MLT1A1 LTR MaLR 1 365 0 440 289 142 37 chr12 79314120 79314338 -64472117 - MIR SINE MIR -12 250 10 2049 161 0 0 chr12 79314508 79314818 -64471637 - AluSx SINE Alu 0 312 3 374 304 27 0 chr12 79315268 79315380 -64471075 - MIR3 SINE MIR -10 198 84 227 356 0 0 chr12 79316161 79316234 -64470221 + MIR SINE MIR 79 151 -57 315 165 55 9 chr12 79316401 79316510 -64469945 - MER113 DNA MER1_type? -319 202 89 1007 272 50 38 chr12 79316606 79316948 -64469507 - L2 LINE L2 0 3313 2968 677 204 22 7 chr12 79317513 79317650 -64468805 + FLAM_C SINE Alu 5 143 0 901 182 37 59 chr12 79317657 79317844 -64468611 + AluJo SINE Alu 108 290 -22 302 301 188 0 chr12 79317901 79318034 -64468421 + MIR SINE MIR 102 259 -3 1016 197 48 129 chr12 79318350 79318816 -64467639 + LTR37B LTR ERV1 7 509 41 181 0 0 0 chr12 79318816 79318836 -64467619 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1782 112 0 0 chr12 79318836 79319069 -64467386 - AluSc SINE Alu -27 282 50 2113 128 0 3 chr12 79319067 79319364 -64467091 - AluSx SINE Alu -16 296 1 1016 197 48 129 chr12 79319364 79319400 -64467055 + LTR37B LTR ERV1 801 468 0 225 148 37 0 chr12 79319460 79319514 -64466941 + (TA)n Simple_repeat Simple_repeat 2 57 0 437 174 35 6 chr12 79319525 79319697 -64466758 + (TA)n Simple_repeat Simple_repeat 2 178 0 22 88 0 0 chr12 79319715 79319772 -64466683 + AT_rich Low_complexity Low_complexity 1 57 0 1275 253 46 22 chr12 79319777 79320275 -64466180 - MLT2F LTR ERVL -64 599 1 186 43 0 0 chr12 79322263 79322286 -64464169 + (TG)n Simple_repeat Simple_repeat 2 24 0 255 152 0 0 chr12 79322395 79322441 -64464014 + (CA)n Simple_repeat Simple_repeat 2 47 0 365 260 130 31 chr12 79322445 79322637 -64463818 + L2 LINE L2 2741 2951 -363 1649 177 8 46 chr12 79322657 79323046 -64463409 - L1MB5 LINE L1 -18 6156 5783 466 291 64 108 chr12 79323050 79323394 -64463061 + L2 LINE L2 2941 3269 -3 2389 89 0 16 chr12 79325393 79325707 -64460748 - AluSg SINE Alu -1 309 1 1999 127 0 0 chr12 79325852 79326148 -64460307 - AluSx SINE Alu 0 306 11 430 17 34 0 chr12 79327716 79327775 -64458680 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 423 224 68 54 chr12 79328028 79328175 -64458280 + L2 LINE L2 3130 3278 -35 304 315 17 134 chr12 79328267 79328365 -64458090 + L2 LINE L2 2549 2604 -710 1743 82 0 135 chr12 79328365 79328668 -64457787 - AluSq SINE Alu -45 268 7 304 315 17 134 chr12 79328668 79328807 -64457648 + L2 LINE L2 2604 2758 -556 256 252 155 68 chr12 79329149 79329427 -64457028 + L2 LINE L2 2967 3268 -4 203 146 42 21 chr12 79331076 79331124 -64455331 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2129 116 7 10 chr12 79331233 79331535 -64454920 + AluSx SINE Alu 6 306 -6 21 71 0 0 chr12 79332339 79332381 -64454074 + AT_rich Low_complexity Low_complexity 1 42 0 235 330 67 67 chr12 79332852 79333031 -64453424 + MIR3 SINE MIR 30 208 0 221 333 20 20 chr12 79333256 79333355 -64453100 - MIR SINE MIR -83 179 81 1542 109 117 8 chr12 79333431 79333670 -64452785 + AluY SINE Alu 29 293 -18 261 139 0 0 chr12 79333696 79333739 -64452716 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2268 93 0 10 chr12 79335380 79335680 -64450775 + AluSx SINE Alu 1 297 -15 302 338 52 39 chr12 79335944 79336098 -64450357 + MIR SINE MIR 99 254 -8 477 238 8 63 chr12 79338481 79338607 -64447848 - L2 LINE L2 0 3313 3195 441 319 41 26 chr12 79338701 79338971 -64447484 - MLT1J LTR MaLR -4 507 234 2415 81 3 3 chr12 79339614 79339922 -64446533 + AluSg SINE Alu 1 308 -2 225 290 12 99 chr12 79339981 79340143 -64446312 - L2 LINE L2 -185 3087 2940 530 266 80 35 chr12 79340222 79340421 -64446034 + MIR SINE MIR 26 233 -29 1337 275 42 30 chr12 79340567 79341094 -64445361 + MLT1H LTR MaLR 13 545 -4 457 229 8 16 chr12 79341351 79341473 -64444982 + MER45A DNA AcHobo 52 172 -6 415 301 60 113 chr12 79342129 79342395 -64444060 - L2 LINE L2 -4 3268 3017 317 336 14 7 chr12 79342716 79342862 -64443593 - MARNA DNA Mariner -37 549 403 204 125 0 0 chr12 79342985 79343017 -64443438 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 236 151 9 chr12 79343126 79343232 -64443223 - MARNA DNA Mariner -226 360 240 1835 184 7 0 chr12 79343342 79343635 -64442820 + AluJo SINE Alu 5 299 -13 376 248 20 20 chr12 79343851 79343973 -64442482 - MIR SINE MIR -49 213 93 466 296 165 5 chr12 79345396 79345602 -64440853 + MIR SINE MIR 17 255 -7 354 247 33 27 chr12 79345720 79345870 -64440585 - MER63 DNA MER1_type -4 1056 906 264 59 0 0 chr12 79347310 79347344 -64439111 + (CA)n Simple_repeat Simple_repeat 2 35 0 1971 125 10 20 chr12 79347595 79347898 -64438557 + AluSx SINE Alu 1 300 -12 539 283 65 42 chr12 79348098 79348406 -64438049 + L1ME4a LINE L1 3319 3633 -2513 354 284 68 27 chr12 79348417 79348565 -64437890 + L1ME4a LINE L1 5316 5469 -652 344 261 86 74 chr12 79348594 79348988 -64437467 + L1ME4a LINE L1 5535 5933 -188 405 92 31 0 chr12 79349035 79349100 -64437355 + THE1C LTR MaLR 1 67 -308 341 310 0 42 chr12 79349126 79349268 -64437187 + C-rich Low_complexity Low_complexity 1 136 0 241 185 25 56 chr12 79349279 79349441 -64437014 + CT-rich Low_complexity Low_complexity 3 159 0 189 0 0 0 chr12 79349500 79349521 -64436934 + (TCTCCC)n Simple_repeat Simple_repeat 1 21 0 186 127 18 36 chr12 79349607 79349662 -64436793 + CT-rich Low_complexity Low_complexity 2 55 0 192 152 0 0 chr12 79351705 79351738 -64434717 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 287 234 26 13 chr12 79351744 79351821 -64434634 - MIR SINE MIR -112 150 73 698 267 85 21 chr12 79351856 79352092 -64434363 + MIR SINE MIR 12 262 0 2020 144 35 49 chr12 79352142 79352444 -64434011 + THE1B LTR MaLR 1 299 -65 2352 82 20 7 chr12 79352444 79352749 -64433706 - AluSc SINE Alu 0 309 1 2020 144 35 49 chr12 79352749 79352815 -64433640 + THE1B LTR MaLR 299 364 0 1163 259 66 8 chr12 79354312 79354675 -64431780 + L2 LINE L2 2370 2753 -561 366 243 103 0 chr12 79354893 79355029 -64431426 + LTR67 LTR ERVL 402 551 -6 424 289 143 12 chr12 79355191 79355527 -64430928 - L1ME4a LINE L1 -218 5903 5524 1395 204 162 8 chr12 79355606 79355989 -64430466 - MER31B LTR ERV1 -19 447 6 342 274 81 8 chr12 79356535 79356659 -64429796 - MIR SINE MIR -80 182 50 1035 38 15 0 chr12 79356659 79356790 -64429665 + L1PA4 LINE L1 6023 6155 0 231 231 0 46 chr12 79356899 79356964 -64429491 + MER5A DNA MER1_type 127 188 -1 368 316 9 9 chr12 79357869 79357983 -64428472 + L2 LINE L2 2945 3058 -214 1272 175 83 49 chr12 79358104 79358430 -64428025 - MLT1A2 LTR MaLR -37 337 1 1810 152 0 37 chr12 79358549 79358846 -64427609 + AluJb SINE Alu 1 286 -26 1324 184 62 0 chr12 79358863 79359168 -64427287 + MER33 DNA MER1_type 1 324 0 2204 56 21 11 chr12 79359368 79359654 -64426801 + L1PA8 LINE L1 5884 6172 0 2326 94 0 3 chr12 79360123 79360421 -64426034 + AluSc SINE Alu 1 297 -12 1579 154 25 35 chr12 79360573 79360948 -64425507 - L1PA15-16 LINE L1 -3815 3034 2663 * 27420 123 15 57 chr12 79360941 79367384 -64419071 + L1PA8 LINE L1 2 6168 -4 9382 146 26 2 chr12 79367382 79368981 -64417474 - L1PA15-16 LINE L1 -4166 2683 1047 * 4332 122 46 4 chr12 79368980 79369655 -64416800 + L1PA16 LINE L1 5454 6156 -10 25 0 0 0 chr12 79369729 79369754 -64416701 + AT_rich Low_complexity Low_complexity 1 25 0 5657 153 29 28 chr12 79369773 79370843 -64415612 + MER11C LTR ERVK 1 1071 0 21 104 0 0 chr12 79371311 79371388 -64415067 + AT_rich Low_complexity Low_complexity 1 77 0 541 198 79 16 chr12 79371405 79371531 -64414924 + LTR40a LTR ERVL 386 519 0 464 258 60 6 chr12 79371583 79371765 -64414690 - L1M4 LINE L1 -2739 3407 3216 2159 161 102 3 chr12 79372257 79372649 -64413806 - L1PA15-16 LINE L1 -5157 1692 1262 400 198 178 10 chr12 79372908 79373009 -64413446 + MLT1C LTR MaLR 350 467 0 27 0 0 0 chr12 79373492 79373519 -64412936 + AT_rich Low_complexity Low_complexity 1 27 0 2748 92 52 5 chr12 79373813 79374238 -64412217 - LTR56 LTR ERV1 0 445 1 8335 155 37 31 chr12 79374293 79374392 -64412063 + L1ME LINE L1 17 114 -6312 2147 126 0 0 chr12 79374392 79374701 -64411754 + AluSx SINE Alu 1 309 -3 8335 155 37 31 chr12 79374701 79376690 -64409765 + L1ME LINE L1 114 2207 -4219 2145 224 57 9 chr12 79377061 79378109 -64408346 + L1ME LINE L1 2062 3165 -3261 1043 240 3 3 chr12 79378136 79378423 -64408032 + L1ME LINE L1 5051 5337 -1089 2199 143 31 8 chr12 79378432 79378816 -64407639 + L1MC1 LINE L1 5941 6333 0 2101 126 3 0 chr12 79378826 79379112 -64407343 + AluSx SINE Alu 1 287 -25 342 182 0 68 chr12 79380045 79380133 -64406322 - MER103 DNA DNA -63 103 22 442 281 43 106 chr12 79380349 79380651 -64405804 + MLT1K LTR MaLR 91 373 -215 326 257 84 24 chr12 79380674 79380923 -64405532 + L1ME LINE L1 5479 5749 -801 288 256 132 16 chr12 79380937 79381066 -64405389 + L1ME LINE L1 5799 5942 -459 3815 202 27 45 chr12 79382640 79383626 -64402829 - LTR5 LTR ERVK 0 969 1 469 312 37 66 chr12 79383735 79384084 -64402371 + LTR16B LTR ERVL 42 380 -84 378 0 0 0 chr12 79384084 79384126 -64402329 + (TG)n Simple_repeat Simple_repeat 1 42 0 333 172 0 0 chr12 79384130 79384194 -64402261 - MER58 DNA MER1_type -2232 188 125 2895 164 30 41 chr12 79384215 79384823 -64401632 - L1MC3 LINE L1 -8 7777 7177 1139 236 88 64 chr12 79385096 79385562 -64400893 + ERVL LTR ERVL 1713 2189 -2807 307 100 0 0 chr12 79385705 79385745 -64400710 - THE1A LTR MaLR 0 355 316 11448 87 29 0 chr12 79385746 79387264 -64399191 - THE1A-int LTR MaLR -18 1562 1 2573 94 8 0 chr12 79387264 79387615 -64398840 - THE1A LTR MaLR 0 355 2 1770 179 0 4 chr12 79387615 79387895 -64398560 - AluSx SINE Alu -33 279 1 1317 314 46 5 chr12 79387908 79388341 -64398114 + ERVL LTR ERVL 2362 2812 -2184 867 329 88 42 chr12 79388451 79389145 -64397310 + ERVL LTR ERVL 3348 4073 -1412 874 326 29 3 chr12 79389908 79390218 -64396237 + L1PA15-16 LINE L1 1252 1569 -5280 * 5174 220 28 27 chr12 79390198 79392006 -64394449 + L1PBb LINE L1 690 2597 -3606 2497 61 0 0 chr12 79392006 79392303 -64394152 + AluY SINE Alu 1 297 -14 5174 220 28 27 chr12 79392303 79393078 -64393377 + L1PBb LINE L1 2597 3369 -2834 556 178 10 0 chr12 79393085 79393186 -64393269 - L1P5 LINE L1 -409 5747 5646 2118 143 22 25 chr12 79393186 79393550 -64392905 + THE1B LTR MaLR 1 363 -1 2740 80 0 3 chr12 79393552 79393914 -64392541 + THE1B-int LTR MaLR 1 361 -1219 1315 249 34 16 chr12 79393915 79394312 -64392143 - LTR10C LTR ERV1 0 529 188 326 99 58 25 chr12 79394332 79394453 -64392002 + (TA)n Simple_repeat Simple_repeat 1 125 0 1929 128 66 0 chr12 79394517 79394822 -64391633 + THE1-int LTR MaLR 359 683 -897 272 261 0 14 chr12 79395844 79395913 -64390542 - MIR3 SINE MIR -16 192 125 29 28 0 0 chr12 79396025 79396061 -64390394 + AT_rich Low_complexity Low_complexity 1 36 0 204 291 5 5 chr12 79396721 79396885 -64389570 + CT-rich Low_complexity Low_complexity 1 203 0 507 113 0 0 chr12 79397753 79397824 -64388631 - THE1C LTR MaLR 0 428 358 1169 103 0 0 chr12 79397825 79397981 -64388474 + AluSc SINE Alu 154 309 0 1520 158 59 26 chr12 79397982 79398285 -64388170 - THE1C LTR MaLR -62 313 1 10290 108 15 47 chr12 79398285 79399917 -64386538 - THE1C-int LTR MaLR 0 1580 1 1194 137 107 57 chr12 79400260 79400560 -64385895 - THE1C LTR MaLR -58 317 3 583 282 69 22 chr12 79401032 79401501 -64384954 - HAL1b LINE L1 -449 899 385 457 259 11 26 chr12 79401917 79402106 -64384349 - HAL1b LINE L1 -950 398 213 491 295 58 5 chr12 79402224 79402414 -64384041 - L1MD3 LINE L1 -1353 6642 6443 481 184 9 9 chr12 79402495 79402609 -64383846 - MER53 DNA DNA -7 182 69 1163 158 0 22 chr12 79403479 79403663 -64382792 + AluJo SINE Alu 38 217 -95 6444 58 8 0 chr12 79403764 79404597 -64381858 + L1PA7 LINE L1 5312 6151 -3 2411 74 3 0 chr12 79405570 79405867 -64380588 + AluY SINE Alu 3 300 -11 1733 156 16 25 chr12 79405874 79406189 -64380266 + AluJo SINE Alu 1 312 0 24 53 0 0 chr12 79406189 79406227 -64380228 + AT_rich Low_complexity Low_complexity 1 38 0 497 364 44 49 chr12 79408517 79408970 -64377485 + L2 LINE L2 530 980 -2334 2606 47 6 0 chr12 79409000 79409321 -64377134 - L1PA7 LINE L1 -5 6149 5827 519 108 12 0 chr12 79409321 79409404 -64377051 + L1P LINE L1 4484 4567 -1579 389 291 142 73 chr12 79409545 79409875 -64376580 + L2 LINE L2 2625 2977 -337 23 33 0 0 chr12 79410579 79410609 -64375846 + AT_rich Low_complexity Low_complexity 1 30 0 240 272 254 30 chr12 79410613 79410782 -64375673 + L3 LINE CR1 1367 1573 -4 7771 19 0 0 chr12 79411577 79412607 -64373848 - L1PA4 LINE L1 -3 6152 5123 214 298 128 11 chr12 79413600 79413694 -64372761 - L2 LINE L2 -1 3312 3208 351 174 60 38 chr12 79414966 79415306 -64371149 + (TA)n Simple_repeat Simple_repeat 1 347 0 251 273 0 0 chr12 79415312 79415378 -64371077 - LTR66 LTR ERVL -150 460 395 1433 126 31 0 chr12 79415689 79415912 -64370543 + MER30 DNA MER1_type 1 230 0 341 202 50 35 chr12 79416211 79416344 -64370111 - L1MD3 LINE L1 -299 5822 5706 716 288 4 58 chr12 79416400 79416643 -64369812 - MIR SINE MIR -25 237 8 424 160 160 16 chr12 79416985 79417110 -64369345 - LTR37A LTR ERV1 -2 424 282 294 229 25 51 chr12 79417457 79417575 -64368880 - MER112 DNA MER1_type -101 159 45 430 263 63 0 chr12 79419792 79419887 -64366568 + MER63A DNA MER1_type 110 210 0 213 393 155 5 chr12 79421177 79421383 -64365072 - MIR SINE MIR -6 256 20 204 343 14 0 chr12 79422528 79422598 -64363857 + MIR3 SINE MIR 89 159 -49 5801 53 5 0 chr12 79423267 79424021 -64362434 - L1PA7 LINE L1 -8 6146 5389 186 43 0 0 chr12 79424477 79424500 -64361955 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3792 55 0 0 chr12 79425598 79426088 -64360367 - MER41A LTR ERV1 -64 490 1 423 305 117 25 chr12 79426104 79426343 -64360112 + MIR SINE MIR 2 262 0 1381 231 118 61 chr12 79426487 79427046 -64359409 + MLT1G1 LTR MaLR 5 595 0 1095 103 0 0 chr12 79427650 79427796 -64358659 - AluY SINE Alu -8 303 158 7132 51 0 0 chr12 79427797 79429138 -64357317 - L1PA7 LINE L1 -1 6153 4810 2119 137 0 6 chr12 79429488 79429801 -64356654 - AluSq SINE Alu -2 311 1 647 329 116 8 chr12 79429843 79430205 -64356250 - L3 LINE CR1 -116 1461 1061 876 185 5 31 chr12 79430617 79430812 -64355643 - MER3 DNA MER1_type -8 201 12 405 336 142 13 chr12 79430969 79431195 -64355260 + MIR SINE MIR 8 262 0 2214 132 0 0 chr12 79431992 79432302 -64354153 - AluSx SINE Alu -2 310 1 2101 146 3 0 chr12 79433398 79433706 -64352749 + AluSx SINE Alu 1 309 -3 622 107 0 0 chr12 79433733 79433817 -64352638 - AluS SINE Alu -229 84 1 1553 97 0 0 chr12 79433998 79434236 -64352219 - L1P LINE L1 -1099 5047 4810 2119 137 0 6 chr12 79434586 79434899 -64351556 - AluSq SINE Alu -2 311 1 655 337 113 6 chr12 79434941 79435303 -64351152 - L3 LINE CR1 -116 1461 1061 876 185 5 31 chr12 79435715 79435910 -64350545 - MER3 DNA MER1_type -8 201 12 405 336 142 13 chr12 79436067 79436293 -64350162 + MIR SINE MIR 8 262 0 2224 132 0 0 chr12 79437090 79437400 -64349055 - AluSx SINE Alu -2 310 1 647 283 109 9 chr12 79437528 79437758 -64348697 - MIR SINE MIR -3 259 7 252 271 182 44 chr12 79437994 79438175 -64348280 + MIR SINE MIR 41 246 -16 304 272 376 0 chr12 79439880 79440005 -64346450 + MIR SINE MIR 2 173 -89 * 362 323 8 48 chr12 79440003 79440127 -64346328 - L2 LINE L2 -1 3271 3153 25 31 0 0 chr12 79440285 79440317 -64346138 + AT_rich Low_complexity Low_complexity 1 32 0 36 53 0 0 chr12 79440879 79440936 -64345519 + AT_rich Low_complexity Low_complexity 1 57 0 1254 256 62 74 chr12 79443049 79443462 -64342993 - MLT1E LTR MaLR -5 588 172 2062 119 3 26 chr12 79443462 79443599 -64342856 + AluSx SINE Alu 1 140 -172 2428 64 0 10 chr12 79443599 79443897 -64342558 + AluY SINE Alu 1 295 -16 477 0 0 0 chr12 79443897 79443950 -64342505 + (TA)n Simple_repeat Simple_repeat 1 53 0 2062 119 3 26 chr12 79443950 79444122 -64342333 + AluSx SINE Alu 138 304 -8 1254 256 62 74 chr12 79444122 79444287 -64342168 - MLT1E LTR MaLR -421 172 17 183 131 16 49 chr12 79444649 79444710 -64341745 + GA-rich Low_complexity Low_complexity 3 61 0 378 304 27 0 chr12 79445462 79445574 -64340881 + MIR3 SINE MIR 84 198 -10 2085 157 0 0 chr12 79446024 79446324 -64340131 + AluSx SINE Alu 3 302 -10 1629 156 4 16 chr12 79446594 79446850 -64339605 - AluSx SINE Alu -59 253 1 24 0 0 0 chr12 79448069 79448093 -64338362 + AT_rich Low_complexity Low_complexity 1 24 0 2566 75 3 0 chr12 79448518 79448825 -64337630 + AluSg SINE Alu 1 308 -2 182 307 13 40 chr12 79449040 79449115 -64337340 + L2 LINE L2 2215 2287 -1027 648 351 79 34 chr12 79449149 79449565 -64336890 + L2 LINE L2 2372 2806 -508 22 0 0 0 chr12 79449940 79449962 -64336493 + AT_rich Low_complexity Low_complexity 1 22 0 2228 95 3 3 chr12 79450681 79450965 -64335490 - AluSc SINE Alu -25 284 1 186 43 0 0 chr12 79450972 79450995 -64335460 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 412 280 17 0 chr12 79453123 79453241 -64333214 - MER94 DNA DNA -14 120 1 29 47 0 0 chr12 79453249 79453292 -64333163 + AT_rich Low_complexity Low_complexity 1 43 0 40 21 0 0 chr12 79453325 79453372 -64333083 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr12 79453420 79453448 -64333007 + AT_rich Low_complexity Low_complexity 1 28 0 224 185 93 0 chr12 79504300 79504354 -64282101 + MIR SINE MIR 204 262 0 182 122 122 24 chr12 79504388 79504429 -64282026 + MIR SINE MIR 143 187 -75 2273 89 7 7 chr12 79504879 79505181 -64281274 + AluSg SINE Alu 1 302 -8 580 231 5 69 chr12 79505202 79505405 -64281050 + L1ME3 LINE L1 5971 6160 -2 207 302 0 0 chr12 79505412 79505455 -64281000 + MER5A DNA MER1_type 80 122 -67 296 304 47 58 chr12 79505628 79505799 -64280656 + MIR SINE MIR 83 251 -11 1866 138 0 48 chr12 79506584 79506896 -64279559 + AluSg SINE Alu 1 297 -13 612 245 100 96 chr12 79506896 79507366 -64279089 - MER34 LTR ERV1 -93 472 1 979 281 91 15 chr12 79507369 79507774 -64278681 - L2 LINE L2 -373 2941 2506 476 338 82 23 chr12 79508046 79508265 -64278190 + MIR SINE MIR 28 259 -3 1543 156 61 37 chr12 79509002 79509297 -64277158 - AluJo SINE Alu -9 303 2 733 261 94 4 chr12 79509713 79509947 -64276508 - MIR SINE MIR 0 262 8 1278 142 18 53 chr12 79509947 79510173 -64276282 - MER20 DNA MER1_type -1 218 1 265 331 34 74 chr12 79511234 79511409 -64275046 + MIR3 SINE MIR 34 201 -7 325 277 22 58 chr12 79511423 79511560 -64274895 - MIR SINE MIR -5 257 126 210 310 0 0 chr12 79511685 79511743 -64274712 + L2 LINE L2 3248 3305 -8 22 0 0 0 chr12 79511950 79511972 -64274483 + AT_rich Low_complexity Low_complexity 1 22 0 1765 119 56 7 chr12 79512498 79512767 -64273688 + AluSg SINE Alu 1 282 -28 240 35 0 0 chr12 79512770 79512799 -64273656 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2254 112 0 7 chr12 79512801 79513106 -64273349 + AluSq SINE Alu 1 303 -10 25 0 0 0 chr12 79513159 79513184 -64273271 + AT_rich Low_complexity Low_complexity 1 25 0 604 304 101 46 chr12 79513732 79514038 -64272417 - L2 LINE L2 0 3272 2950 3859 185 12 22 chr12 79516207 79516933 -64269522 + L1MB2 LINE L1 5449 6167 -4 272 250 0 43 chr12 79520159 79520251 -64266204 - MER112 DNA MER1_type -170 90 3 338 376 96 0 chr12 79520966 79521091 -64265364 + L2 LINE L2 3134 3270 -2 2127 124 3 34 chr12 79521271 79521593 -64264862 + AluSx SINE Alu 1 312 0 185 0 40 0 chr12 79522260 79522285 -64264170 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2182 112 7 0 chr12 79522292 79522578 -64263877 - AluSp SINE Alu -25 288 1 2500 104 74 0 chr12 79522620 79522984 -64263471 - L1PA11 LINE L1 0 6174 5784 212 309 29 0 chr12 79522992 79523060 -64263395 - L2 LINE L2 -520 2794 2725 283 235 7 69 chr12 79523396 79523563 -64262892 + AluSp SINE Alu 1 129 -174 611 257 11 32 chr12 79523885 79524072 -64262383 - AluSx SINE Alu -128 184 2 495 259 34 8 chr12 79524377 79524511 -64261944 + MIR SINE MIR 15 150 -61 4821 125 15 27 chr12 79524512 79525265 -64261190 + Tigger2 DNA MER2_type 1 744 -1974 2508 65 0 0 chr12 79525297 79525603 -64260852 + AluY SINE Alu 1 306 -5 1292 167 45 4 chr12 79525647 79525892 -64260563 + Tigger2 DNA MER2_type 2461 2715 -3 376 243 58 10 chr12 79525894 79525997 -64260458 + MIR SINE MIR 155 262 0 2041 104 42 7 chr12 79526964 79527251 -64259204 + AluSq SINE Alu 1 297 -16 1472 229 16 27 chr12 79527414 79527781 -64258674 - L1ME1 LINE L1 -8 6158 5796 1985 106 73 4 chr12 79527958 79528232 -64258223 - AluSg SINE Alu -17 293 1 21 0 0 0 chr12 79528621 79528642 -64257813 + AT_rich Low_complexity Low_complexity 1 21 0 722 164 0 0 chr12 79528654 79528758 -64257697 - FRAM SINE Alu -25 151 48 738 236 75 0 chr12 79529376 79529577 -64256878 - MIR SINE MIR -25 237 19 1926 110 4 0 chr12 79529578 79529841 -64256614 - AluSx SINE Alu -10 302 39 1950 176 97 0 chr12 79529912 79530293 -64256162 - L1ME1 LINE L1 -447 5737 5320 376 276 41 7 chr12 79530314 79530459 -64255996 - L1ME1 LINE L1 -1351 4795 4646 8449 212 133 20 chr12 79530495 79532951 -64253504 - L1M4 LINE L1 -837 5807 3075 1041 262 0 4 chr12 79532996 79533248 -64253207 - L1M4 LINE L1 -6287 255 5 326 330 27 54 chr12 79533367 79533552 -64252903 + MER5A DNA MER1_type 10 189 0 285 345 64 9 chr12 79534803 79534913 -64251542 + L2 LINE L2 3151 3266 -6 2239 112 3 0 chr12 79535232 79535528 -64250927 - AluSq SINE Alu -16 297 1 2247 87 6 6 chr12 79535560 79535872 -64250583 + L1P4 LINE L1 5404 5715 -459 218 175 0 0 chr12 79536232 79536272 -64250183 + G-rich Low_complexity Low_complexity 1 40 0 205 324 7 21 chr12 79536234 79536379 -64250076 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 * 24 32 0 0 chr12 79536735 79536766 -64249689 + AT_rich Low_complexity Low_complexity 1 31 0 231 379 53 0 chr12 79536965 79537060 -64249395 - L2 LINE L2 -30 3242 3143 2697 95 138 10 chr12 79537283 79537695 -64248760 + MER4C LTR ERV1 1 465 0 6019 161 10 8 chr12 79537876 79539889 -64246566 - L1PB1 LINE L1 -2 6149 4128 434 138 14 166 chr12 79540023 79540082 -64246373 + Charlie8 DNA MER1_type 38 64 -2353 2094 139 0 7 chr12 79540082 79540384 -64246071 + AluSq SINE Alu 1 300 -13 434 138 14 166 chr12 79540384 79540469 -64245986 + Charlie8 DNA MER1_type 64 160 -2257 964 144 8 0 chr12 79540899 79541031 -64245424 + FLAM_C SINE Alu 1 133 0 486 296 75 75 chr12 79541165 79541563 -64244892 - L2 LINE L2 -16 3297 2900 5254 138 45 29 chr12 79541585 79542473 -64243982 - MER4D LTR ERV1 0 903 2 1188 223 85 49 chr12 79542489 79542937 -64243518 - L2 LINE L2 -530 2784 2321 21 0 0 0 chr12 79542937 79542958 -64243497 + AT_rich Low_complexity Low_complexity 1 21 0 253 116 47 0 chr12 79542980 79543023 -64243432 - L2 LINE L2 -980 2334 2290 1756 116 84 7 chr12 79543918 79544203 -64242252 + AluSx SINE Alu 1 307 -5 288 327 0 0 chr12 79544255 79544356 -64242099 - MIR SINE MIR -10 252 152 1671 181 6 16 chr12 79544483 79544797 -64241658 + AluJo SINE Alu 1 311 -1 396 303 200 10 chr12 79545003 79545198 -64241257 - MIR SINE MIR 0 262 31 2107 132 0 0 chr12 79545328 79545623 -64240832 + AluSg SINE Alu 1 295 -15 337 290 11 0 chr12 79546797 79546890 -64239565 + L3b LINE CR1 1337 1430 -153 533 292 65 11 chr12 79547662 79547847 -64238608 + MIR SINE MIR 10 204 -58 201 259 91 112 chr12 79548144 79548287 -64238168 + L2 LINE L2 3161 3300 -13 493 264 113 13 chr12 79549272 79549431 -64237024 + MIR SINE MIR 5 179 -83 28 48 0 0 chr12 79549910 79549952 -64236503 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr12 79550013 79550042 -64236413 + AT_rich Low_complexity Low_complexity 1 29 0 996 172 90 52 chr12 79550085 79550318 -64236137 - MIR SINE MIR 0 262 21 1693 89 31 0 chr12 79550546 79550771 -64235684 + L1PA10 LINE L1 5932 6163 -5 239 324 56 0 chr12 79551132 79551203 -64235252 - L2 LINE L2 -16 3256 3182 2256 104 0 7 chr12 79552544 79552852 -64233603 + AluY SINE Alu 1 306 -5 230 280 167 15 chr12 79552939 79553071 -64233384 + MIR SINE MIR 1 152 -110 906 252 164 53 chr12 79553075 79553256 -64233199 + MLT1J LTR MaLR 1 161 -350 1481 173 0 0 chr12 79553256 79553487 -64232968 + AluJo SINE Alu 1 231 -81 906 252 164 53 chr12 79553487 79553738 -64232717 + MLT1J LTR MaLR 161 481 -30 2400 75 0 3 chr12 79553747 79554041 -64232414 - AluSq SINE Alu -20 293 1 212 162 27 0 chr12 79555000 79555037 -64231418 + (TG)n Simple_repeat Simple_repeat 1 38 0 363 245 7 21 chr12 79555039 79555182 -64231273 + C-rich Low_complexity Low_complexity 4 144 0 30 45 0 0 chr12 79555229 79555273 -64231182 + GC_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 79555510 79555531 -64230924 + GC_rich Low_complexity Low_complexity 1 21 0 3292 129 4 10 chr12 79558372 79558859 -64227596 + MER31A LTR ERV1 2 485 0 1545 143 73 24 chr12 79559119 79559283 -64227172 - AluJo SINE Alu -11 301 116 189 0 0 0 chr12 79559283 79559304 -64227151 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1545 143 73 24 chr12 79559304 79559426 -64227029 - AluJo SINE Alu -196 116 1 1030 165 0 0 chr12 79559556 79559720 -64226735 - AluJb SINE Alu -14 298 135 1042 246 99 65 chr12 79561446 79562012 -64224443 - MER34C LTR ERV1 0 585 1 23 0 0 0 chr12 79562207 79562230 -64224225 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 79562707 79562728 -64223727 + AT_rich Low_complexity Low_complexity 1 21 0 429 270 68 60 chr12 79562908 79563365 -64223090 - MER34 LTR ERV1 0 542 5 1387 133 0 5 chr12 79563562 79563757 -64222698 + AluSg/x SINE Alu 104 297 -15 2398 56 0 3 chr12 79563760 79564076 -64222379 + AluY SINE Alu 1 315 0 5045 161 19 44 chr12 79564076 79565025 -64221430 + MER109 Unknown Unknown 293 1217 -1215 612 193 65 90 chr12 79565142 79565432 -64221023 + L1MC5 LINE L1 7641 7923 -38 2070 154 57 22 chr12 79565803 79566205 -64220250 - MSTA LTR MaLR -12 416 1 2153 142 0 0 chr12 79566915 79567218 -64219237 - AluSx SINE Alu -9 303 1 6796 110 94 43 chr12 79567286 79567585 -64218870 - Tigger3b DNA MER2_type -1798 1230 948 2356 98 0 0 chr12 79567585 79567891 -64218564 + AluSg1 SINE Alu 1 306 -3 6796 110 94 43 chr12 79567891 79567952 -64218503 - Tigger3b DNA MER2_type -2080 948 892 191 88 29 0 chr12 79567952 79567986 -64218469 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 6796 110 94 43 chr12 79567986 79568586 -64217869 - Tigger3b DNA MER2_type -2136 892 324 2129 134 3 0 chr12 79568586 79568878 -64217577 - AluSx SINE Alu -19 293 1 6796 110 94 43 chr12 79568878 79569009 -64217446 - Tigger3b DNA MER2_type -2704 324 201 1796 160 13 19 chr12 79569009 79569316 -64217139 - AluJo SINE Alu -7 305 1 6796 110 94 43 chr12 79569316 79569390 -64217065 - Tigger3b DNA MER2_type -2827 201 2 351 0 0 0 chr12 79569391 79569430 -64217025 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 259 74 46 chr12 79569435 79569543 -64216912 - MIR SINE MIR -6 256 146 470 288 98 11 chr12 79569582 79569766 -64216689 - L2 LINE L2 -1 3312 3113 207 0 0 0 chr12 79570660 79570683 -64215772 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 460 273 77 41 chr12 79571452 79571646 -64214809 + MIR SINE MIR 2 202 -60 * 688 249 51 6 chr12 79571644 79571821 -64214634 + MIR SINE MIR 78 262 0 818 263 62 63 chr12 79571933 79572230 -64214225 - MLT1J1 LTR MaLR -3 508 150 2286 99 6 6 chr12 79572230 79572543 -64213912 - AluSq SINE Alu 0 313 1 818 263 62 63 chr12 79572543 79572690 -64213765 - MLT1J1 LTR MaLR -361 150 4 352 264 45 0 chr12 79572950 79573060 -64213395 - MIR SINE MIR -64 198 84 1693 152 123 3 chr12 79573222 79573532 -64212923 - MER7A DNA MER2_type -1 345 1 2397 91 0 0 chr12 79573618 79573915 -64212540 - AluSg SINE Alu -13 297 1 23 33 0 0 chr12 79574455 79574485 -64211970 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 79575375 79575404 -64211051 + AT_rich Low_complexity Low_complexity 1 29 0 2102 124 23 3 chr12 79575404 79575710 -64210745 - AluSx SINE Alu 0 312 1 622 163 18 151 chr12 79575833 79575904 -64210551 + MER58B DNA MER1_type 198 236 -2184 847 257 0 6 chr12 79575904 79576083 -64210372 + MER45A DNA AcHobo 1 178 0 622 163 18 151 chr12 79576083 79576177 -64210278 + MER58B DNA MER1_type 236 341 0 394 267 25 25 chr12 79576235 79576355 -64210100 - MER5A DNA MER1_type -28 161 42 15062 117 51 6 chr12 79576497 79578338 -64208117 + Tigger1 DNA MER2_type 1 1969 -449 2111 123 13 26 chr12 79578338 79578648 -64207807 + AluSx SINE Alu 1 306 -6 15062 117 51 6 chr12 79578648 79579120 -64207335 + Tigger1 DNA MER2_type 1969 2418 0 2167 128 0 7 chr12 79579294 79579599 -64206856 - AluSx SINE Alu -9 303 1 201 260 234 0 chr12 79579664 79579741 -64206714 + MIR SINE MIR 58 152 -110 2317 178 30 9 chr12 79579746 79580207 -64206248 + L1MD3 LINE L1 7517 7987 -8 184 274 167 0 chr12 79580267 79580351 -64206104 - MIR SINE MIR -20 242 145 677 56 0 0 chr12 79580956 79581045 -64205410 - L1MB2 LINE L1 -7 6164 6076 3134 198 103 27 chr12 79581093 79581267 -64205188 + L1ME1 LINE L1 5258 5417 -749 2306 113 0 3 chr12 79581267 79581577 -64204878 + AluSg SINE Alu 1 309 -1 3134 198 103 27 chr12 79581577 79582240 -64204215 + L1ME1 LINE L1 5417 6158 -8 1201 174 0 23 chr12 79582488 79582706 -64203749 + AluJo SINE Alu 86 298 -14 917 206 4 22 chr12 79584506 79584734 -64201721 - AluSq SINE Alu -8 305 82 6087 66 26 55 chr12 79584844 79585728 -64200727 + SVA Other Other 9 866 -520 1260 62 0 29 chr12 79585741 79585950 -64200505 + SVA Other Other 664 866 -520 5026 52 14 255 chr12 79585967 79587224 -64199231 + SVA Other Other 433 1385 -1 27 0 0 0 chr12 79587459 79587486 -64198969 + AT_rich Low_complexity Low_complexity 1 27 0 250 298 96 0 chr12 79587606 79587766 -64198689 - MIR SINE MIR -54 208 36 407 268 75 107 chr12 79589039 79589319 -64197136 - L2 LINE L2 -8 3264 2994 2360 81 20 3 chr12 79589692 79589990 -64196465 + AluSc SINE Alu 1 303 -6 2131 126 3 3 chr12 79590003 79590304 -64196151 + AluSx SINE Alu 1 301 -11 631 252 65 33 chr12 79590422 79590518 -64195937 - MIR SINE MIR 0 262 171 738 204 39 123 chr12 79590518 79590778 -64195677 - MER8 DNA MER2_type 0 239 2 631 252 65 33 chr12 79590778 79590895 -64195560 - MIR SINE MIR -91 171 42 1670 180 9 41 chr12 79591134 79591450 -64195005 + AluJo SINE Alu 1 306 -6 2171 112 3 0 chr12 79592349 79592634 -64193821 + AluSx SINE Alu 3 288 -24 2289 93 3 3 chr12 79592922 79593222 -64193233 - AluSq SINE Alu -13 300 1 1809 192 7 0 chr12 79593224 79593521 -64192934 - AluJb SINE Alu -13 299 1 1731 165 3 34 chr12 79594277 79594574 -64191881 - AluJb SINE Alu -12 300 13 1936 130 7 23 chr12 79594884 79595191 -64191264 - AluSx SINE Alu -10 302 1 1252 204 139 38 chr12 79595640 79596020 -64190435 - LTR37B LTR ERV1 -1 467 40 2442 101 0 0 chr12 79596020 79596327 -64190128 - AluSq SINE Alu -6 307 1 1252 204 139 38 chr12 79596327 79596363 -64190092 - LTR37B LTR ERV1 -428 40 9 236 222 42 0 chr12 79596799 79596871 -64189584 - L3b LINE CR1 -365 1218 1144 21 0 0 0 chr12 79597043 79597064 -64189391 + AT_rich Low_complexity Low_complexity 1 21 0 273 284 49 0 chr12 79598452 79598533 -64187922 - L2 LINE L2 -2 3311 3227 1702 195 10 0 chr12 79598718 79599015 -64187440 - AluJo SINE Alu 0 312 13 743 305 34 31 chr12 79599703 79600116 -64186339 - L1ME LINE L1 -339 5782 5369 1746 172 8 68 chr12 79600116 79600248 -64186207 + MER2 DNA MER2_type 1 139 -205 2212 125 0 0 chr12 79600248 79600552 -64185903 - AluSx SINE Alu -8 304 1 1746 172 8 68 chr12 79600552 79600564 -64185891 + MER2 DNA MER2_type 139 150 -194 2199 96 7 7 chr12 79600564 79600856 -64185599 - AluSg SINE Alu -18 292 1 1746 172 8 68 chr12 79600856 79601076 -64185379 + MER2 DNA MER2_type 150 344 0 402 158 13 13 chr12 79601455 79601531 -64184924 + AluJ/FLAM SINE Alu 4 79 -233 221 189 14 27 chr12 79601656 79601730 -64184725 + GA-rich Low_complexity Low_complexity 6 78 0 595 237 15 19 chr12 79601755 79602215 -64184240 + GA-rich Low_complexity Low_complexity 1 458 0 270 108 0 0 chr12 79602222 79602259 -64184196 + (A)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr12 79602295 79602317 -64184138 + (T)n Simple_repeat Simple_repeat 1 22 0 412 250 0 22 chr12 79602317 79602409 -64184046 + G-rich Low_complexity Low_complexity 3 92 0 2446 70 0 10 chr12 79602859 79603160 -64183295 + AluSg1 SINE Alu 1 298 -11 799 184 270 47 chr12 79603389 79603622 -64182833 + AluJo SINE Alu 1 285 -17 28 0 0 0 chr12 79603629 79603657 -64182798 + AT_rich Low_complexity Low_complexity 1 28 0 180 263 0 0 chr12 79603657 79603695 -64182760 - L2 LINE L2 -32 3240 3203 369 95 0 0 chr12 79603700 79603763 -64182692 + (GA)n Simple_repeat Simple_repeat 2 64 0 1100 244 98 12 chr12 79604451 79604869 -64181586 - L1MC5 LINE L1 -35 7926 7473 255 61 0 0 chr12 79604875 79604908 -64181547 + (TG)n Simple_repeat Simple_repeat 2 34 0 557 311 151 69 chr12 79605041 79605978 -64180477 + L2 LINE L2 1471 2483 -831 249 284 169 22 chr12 79606269 79606494 -64179961 + L2 LINE L2 2824 3081 -191 186 173 365 0 chr12 79606608 79606660 -64179795 - MIR3 SINE MIR -11 197 127 202 330 134 0 chr12 79607272 79607384 -64179071 - L2 LINE L2 0 3272 3146 1730 164 0 0 chr12 79607430 79607698 -64178757 + AluJo SINE Alu 1 268 -44 2286 109 3 6 chr12 79607996 79608308 -64178147 - AluSx SINE Alu -1 311 1 207 0 0 0 chr12 79608670 79608693 -64177762 + (T)n Simple_repeat Simple_repeat 1 23 0 2204 125 3 0 chr12 79609041 79609352 -64177103 - AluSx SINE Alu 0 312 1 222 37 0 0 chr12 79611240 79611267 -64175188 + (TG)n Simple_repeat Simple_repeat 1 27 0 371 256 110 73 chr12 79611274 79611387 -64175068 - Charlie8 DNA MER1_type -113 228 121 2245 111 0 0 chr12 79611387 79611684 -64174771 - AluSg SINE Alu -13 297 1 371 256 110 73 chr12 79611684 79611789 -64174666 - Charlie8 DNA MER1_type -220 121 2 215 324 37 15 chr12 79611854 79611990 -64174465 + MIR SINE MIR 118 256 -6 262 176 39 0 chr12 79612758 79612809 -64173646 + MER117 DNA MER1_type 128 180 -17 2064 113 17 14 chr12 79612927 79613245 -64173210 + AluSx SINE Alu 1 319 0 405 103 15 15 chr12 79614515 79614583 -64171872 - MSTB1 LTR MaLR -2 430 363 1030 169 0 0 chr12 79614583 79614737 -64171718 + AluJb SINE Alu 133 286 -26 2002 164 24 30 chr12 79614752 79615123 -64171332 - MSTB1 LTR MaLR -63 369 1 352 263 75 31 chr12 79615252 79615412 -64171043 - MIR3 SINE MIR -28 180 14 2029 156 130 18 chr12 79615716 79616101 -64170354 + MSTA LTR MaLR 1 428 0 2232 128 0 0 chr12 79616221 79616526 -64169929 - AluSx SINE Alu -6 306 2 261 0 0 0 chr12 79617687 79617716 -64168739 + (TG)n Simple_repeat Simple_repeat 2 30 0 1839 138 34 18 chr12 79617726 79618162 -64168293 - LTR45B LTR ERV1 -10 515 3 702 158 105 26 chr12 79618485 79618637 -64167818 + L1MC1 LINE L1 6170 6333 0 3224 144 8 2 chr12 79618732 79619226 -64167229 + LOR1a LTR ERV1 1 497 0 228 293 17 0 chr12 79619344 79619402 -64167053 + L2 LINE L2 3213 3271 -1 289 200 0 219 chr12 79619571 79619781 -64166674 - MIR3 SINE MIR -13 195 32 21 57 0 0 chr12 79620795 79620830 -64165625 + AT_rich Low_complexity Low_complexity 1 35 0 218 193 18 0 chr12 79621033 79621090 -64165365 + CT-rich Low_complexity Low_complexity 1 58 0 920 122 0 20 chr12 79621913 79622060 -64164395 - AluSg/x SINE Alu -10 302 159 2166 119 0 17 chr12 79622143 79622445 -64164010 - AluSg SINE Alu -13 297 1 1045 165 0 0 chr12 79622575 79622739 -64163716 - AluJb SINE Alu -14 298 135 315 157 101 118 chr12 79624466 79624644 -64161811 - LTR48 LTR ERV1 0 787 613 323 208 10 73 chr12 79624715 79624811 -64161644 - LTR48 LTR ERV1 -336 451 362 959 166 102 0 chr12 79624845 79625032 -64161423 - MER34C LTR ERV1 -379 206 1 23 0 0 0 chr12 79625227 79625250 -64161205 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 79625727 79625748 -64160707 + AT_rich Low_complexity Low_complexity 1 21 0 386 277 63 56 chr12 79625928 79626385 -64160070 - MER34 LTR ERV1 0 542 5 584 234 60 34 chr12 79626674 79626824 -64159631 + MER34B LTR ERV1 322 482 -83 2146 126 0 3 chr12 79626824 79627125 -64159330 - AluSq SINE Alu -13 300 1 584 234 60 34 chr12 79627125 79627209 -64159246 + MER34B LTR ERV1 482 562 -3 302 256 61 156 chr12 79627214 79627426 -64159029 + L2 LINE L2 2979 3145 -168 2310 89 0 3 chr12 79627426 79627729 -64158726 + AluY SINE Alu 1 302 -9 302 256 61 156 chr12 79627729 79627875 -64158580 + L2 LINE L2 3145 3303 -10 355 293 98 58 chr12 79627881 79628055 -64158400 + MIR3 SINE MIR 21 201 -7 1990 146 7 3 chr12 79628296 79628591 -64157864 + AluSq SINE Alu 1 296 -17 1781 175 7 16 chr12 79628774 79629083 -64157372 - AluJb SINE Alu -6 306 1 1994 100 0 63 chr12 79629418 79629755 -64156700 - AluSg SINE Alu 0 318 1 634 295 102 41 chr12 79631315 79631807 -64154648 - MER34 LTR ERV1 -20 522 1 2125 108 30 17 chr12 79631948 79632268 -64154187 + AluSx SINE Alu 1 312 0 234 241 66 109 chr12 79632269 79632406 -64154049 - MER5A DNA MER1_type -55 134 4 299 263 13 0 chr12 79632947 79633023 -64153432 - MER5A DNA MER1_type -50 139 63 397 295 52 67 chr12 79633227 79633495 -64152960 + L2 LINE L2 2826 3089 -183 206 306 81 0 chr12 79634279 79634341 -64152114 + L2 LINE L2 3188 3254 -18 1351 110 0 0 chr12 79635810 79635983 -64150472 + AluSx SINE Alu 1 173 -139 28 0 0 0 chr12 79636162 79636190 -64150265 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr12 79637686 79637717 -64148738 + AT_rich Low_complexity Low_complexity 1 31 0 380 327 26 18 chr12 79637769 79637882 -64148573 - L2 LINE L2 -2 3270 3157 198 0 0 0 chr12 79639152 79639174 -64147281 + (A)n Simple_repeat Simple_repeat 1 22 0 592 300 97 4 chr12 79639889 79640126 -64146329 - MIR SINE MIR -1 261 3 261 217 112 49 chr12 79640669 79640812 -64145643 - L1ME4a LINE L1 -107 6014 5863 23 33 0 0 chr12 79640818 79640848 -64145607 + AT_rich Low_complexity Low_complexity 1 30 0 2316 88 0 19 chr12 79641043 79641360 -64145095 - AluY SINE Alu 0 311 1 482 226 30 0 chr12 79641929 79642062 -64144393 - L1ME3A LINE L1 -208 5962 5826 282 288 110 0 chr12 79642592 79642710 -64143745 + MLT1J LTR MaLR 374 504 -7 207 0 0 0 chr12 79642785 79642808 -64143647 + (TA)n Simple_repeat Simple_repeat 1 23 0 454 325 35 12 chr12 79643709 79643878 -64142577 + MIR SINE MIR 13 185 -77 207 280 0 0 chr12 79643961 79644011 -64142444 + L2 LINE L2 3264 3313 0 342 0 0 0 chr12 79644159 79644197 -64142258 + (TG)n Simple_repeat Simple_repeat 2 39 0 2103 122 7 0 chr12 79645464 79645758 -64140697 - AluSg SINE Alu -14 296 1 303 286 166 46 chr12 79645938 79646155 -64140300 - MIR SINE MIR -18 244 2 308 326 137 6 chr12 79646239 79646414 -64140041 + MLT1K LTR MaLR 314 511 -77 304 313 94 0 chr12 79646431 79646559 -64139896 + L3 LINE CR1 364 503 -1074 182 330 45 11 chr12 79646964 79647052 -64139403 + MIR SINE MIR 49 139 -123 21 0 0 0 chr12 79647407 79647428 -64139027 + AT_rich Low_complexity Low_complexity 1 21 0 246 266 84 7 chr12 79647821 79647964 -64138491 - L1ME4a LINE L1 -3 6118 5965 379 364 62 0 chr12 79647979 79648141 -64138314 + L3 LINE CR1 1399 1570 -7 868 80 7 29 chr12 79648942 79649080 -64137375 - L1PA14 LINE L1 -1 6160 6026 241 296 92 78 chr12 79649324 79649466 -64136989 - MIR SINE MIR 0 262 119 833 144 25 11 chr12 79649565 79649748 -64136707 + L1MC/D LINE L1 5263 5440 -919 25 0 0 0 chr12 79649748 79649773 -64136682 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 79649797 79649822 -64136633 + AT_rich Low_complexity Low_complexity 1 25 0 2966 132 30 113 chr12 79649824 79650006 -64136449 - LTR8 LTR ERV1 0 691 496 7306 47 0 0 chr12 79650006 79651018 -64135437 - L1PA5 LINE L1 -2 6152 5140 2966 132 30 113 chr12 79651018 79651588 -64134867 - LTR8 LTR ERV1 -195 496 1 257 125 0 21 chr12 79651588 79651636 -64134819 + L1MC/D LINE L1 5483 5529 -713 223 341 88 0 chr12 79651755 79651846 -64134609 + L2 LINE L2 3169 3267 -5 398 212 22 17 chr12 79651921 79652100 -64134355 + (CA)n Simple_repeat Simple_repeat 1 180 0 186 254 0 0 chr12 79652132 79652199 -64134256 + (CA)n Simple_repeat Simple_repeat 1 67 0 419 170 20 26 chr12 79652252 79652405 -64134050 + (CA)n Simple_repeat Simple_repeat 2 153 0 372 324 132 18 chr12 79652910 79653129 -64133326 - MIR SINE MIR -18 244 1 527 282 126 0 chr12 79653151 79653325 -64133130 + MIR SINE MIR 7 202 -60 737 178 16 0 chr12 79653326 79653455 -64133000 + FLAM_A SINE Alu 1 131 -2 1965 143 0 7 chr12 79653465 79653752 -64132703 + AluSx SINE Alu 28 312 0 286 261 171 76 chr12 79654872 79655083 -64131372 - MIR SINE MIR -30 232 2 1843 142 7 32 chr12 79657758 79658068 -64128387 + AluJo SINE Alu 1 302 -10 684 164 67 15 chr12 79658083 79658217 -64128238 - FLAM_C SINE Alu -2 141 1 26 30 0 0 chr12 79658267 79658300 -64128155 + AT_rich Low_complexity Low_complexity 1 33 0 446 270 79 37 chr12 79658878 79659067 -64127388 + MIR SINE MIR 20 216 -46 2229 94 10 10 chr12 79659549 79659857 -64126598 + AluSg SINE Alu 1 308 -2 1397 191 17 4 chr12 79659903 79660144 -64126311 + AluJo SINE Alu 11 254 -58 1161 75 0 32 chr12 79660159 79660345 -64126110 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 557 120 11 0 chr12 79660345 79660437 -64126018 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 529 282 61 25 chr12 79660533 79660696 -64125759 - MIR SINE MIR -74 188 20 431 333 0 0 chr12 79660772 79660877 -64125578 - MIR SINE MIR -62 146 42 2572 49 0 7 chr12 79661317 79661625 -64124830 + AluY SINE Alu 1 306 -5 271 345 134 0 chr12 79661712 79661854 -64124601 + MIR SINE MIR 1 161 -101 765 243 164 54 chr12 79661858 79662034 -64124421 + MLT1J LTR MaLR 7 162 -349 1496 173 0 0 chr12 79662034 79662265 -64124190 + AluJo SINE Alu 1 231 -81 765 243 164 54 chr12 79662265 79662516 -64123939 + MLT1J LTR MaLR 162 481 -30 2392 75 0 3 chr12 79662525 79662819 -64123636 - AluSq SINE Alu -20 293 1 227 30 0 30 chr12 79663806 79663839 -64122616 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 2611 133 63 24 chr12 79664149 79664240 -64122215 + L1MB3 LINE L1 5529 5615 -568 2166 101 7 7 chr12 79664240 79664538 -64121917 + AluSx SINE Alu 1 298 -14 2611 133 63 24 chr12 79664538 79664987 -64121468 + L1MB3 LINE L1 5615 6090 -93 592 155 91 59 chr12 79665229 79665416 -64121039 - L1MD3 LINE L1 -844 7151 6959 1594 188 14 11 chr12 79665426 79665713 -64120742 - AluJo SINE Alu -24 288 1 376 325 66 7 chr12 79665754 79665905 -64120550 + MIR SINE MIR 102 261 -1 320 282 205 0 chr12 79666041 79666158 -64120297 + MIR3 SINE MIR 62 202 -6 220 266 78 0 chr12 79666540 79666604 -64119851 + L2 LINE L2 3221 3289 -24 1856 171 3 0 chr12 79666605 79666910 -64119545 - AluJo SINE Alu -6 306 1 358 280 10 110 chr12 79667108 79667308 -64119147 + MIR3 SINE MIR 8 187 -21 21 57 0 0 chr12 79669079 79669114 -64117341 + AT_rich Low_complexity Low_complexity 1 35 0 810 126 0 8 chr12 79669141 79669260 -64117195 - FLAM_C SINE Alu -15 118 1 317 298 69 8 chr12 79669452 79669583 -64116872 - MIR SINE MIR -78 184 46 591 292 98 13 chr12 79669753 79669956 -64116499 - MIR SINE MIR -1 261 34 1018 165 134 10 chr12 79669956 79670150 -64116305 - MER20 DNA MER1_type 0 219 2 591 292 98 13 chr12 79670150 79670182 -64116273 - MIR SINE MIR -228 34 6 550 250 111 87 chr12 79670265 79670689 -64115766 - LTR16A LTR ERVL -1 449 16 880 164 19 13 chr12 79670810 79670969 -64115486 + FRAM SINE Alu 3 162 -14 2106 111 10 7 chr12 79670971 79671260 -64115195 + AluSx SINE Alu 1 290 -22 1808 163 17 0 chr12 79671378 79671666 -64114789 + AluSx SINE Alu 1 293 -19 749 237 43 28 chr12 79671792 79672003 -64114452 - MIR SINE MIR -34 228 15 21 0 0 0 chr12 79674546 79674567 -64111888 + AT_rich Low_complexity Low_complexity 1 21 0 2370 98 0 0 chr12 79674727 79675032 -64111423 + AluSx SINE Alu 1 305 -7 314 218 69 23 chr12 79675417 79675504 -64110951 - L1MC4 LINE L1 -1339 6703 6613 27 73 0 0 chr12 79677029 79677084 -64109371 + AT_rich Low_complexity Low_complexity 1 55 0 363 294 0 0 chr12 79677822 79677948 -64108507 + G-rich Low_complexity Low_complexity 6 131 0 579 152 0 0 chr12 79677950 79678062 -64108393 + (CTGGGG)n Simple_repeat Simple_repeat 4 115 0 363 105 0 0 chr12 79678376 79678433 -64108022 + (CTG)n Simple_repeat Simple_repeat 2 58 0 1639 158 27 14 chr12 79681190 79681482 -64104973 + AluJo SINE Alu 1 296 -16 938 228 129 4 chr12 79681624 79681896 -64104559 + L2 LINE L2 1954 2259 -1055 289 267 67 42 chr12 79682262 79682382 -64104073 + L2 LINE L2 2334 2456 -858 317 248 42 27 chr12 79682383 79682562 -64103893 + MER115 DNA AcHobo 1 227 -466 820 257 208 10 chr12 79682600 79682903 -64103552 + MER115 DNA AcHobo 331 693 0 677 216 108 52 chr12 79682914 79683127 -64103328 + L2 LINE L2 2472 2696 -618 287 230 244 83 chr12 79683126 79683356 -64103099 + L2 LINE L2 2995 3261 -52 * 349 282 69 30 chr12 79684733 79684864 -64101591 + MIR3 SINE MIR 3 138 -70 274 288 12 12 chr12 79684831 79684911 -64101544 + L2 LINE L2 3193 3272 0 * 302 288 63 27 chr12 79684949 79685060 -64101395 + L2 LINE L2 3150 3264 -8 1915 92 23 15 chr12 79685061 79685321 -64101134 + L1PA10 LINE L1 5907 6168 0 21 0 0 0 chr12 79685347 79685368 -64101087 + AT_rich Low_complexity Low_complexity 1 21 0 273 311 41 49 chr12 79685399 79685521 -64100934 + L2 LINE L2 3149 3269 -3 477 266 63 6 chr12 79685858 79686016 -64100439 - MLT1L LTR MaLR -26 589 423 1239 41 0 7 chr12 79686064 79686209 -64100246 + AluY SINE Alu 151 294 -17 654 310 24 5 chr12 79686252 79686465 -64099990 - MLT1L LTR MaLR -296 319 103 776 155 27 20 chr12 79686616 79686764 -64099691 + L1PA16 LINE L1 5681 5829 -337 1337 162 30 13 chr12 79686764 79686998 -64099457 + AluSc SINE Alu 67 304 -5 382 290 27 60 chr12 79687338 79687521 -64098934 - MLT1K LTR MaLR -263 325 149 237 212 91 15 chr12 79687670 79687736 -64098719 - L2 LINE L2 -187 3085 3015 2241 118 0 3 chr12 79687740 79688046 -64098409 - AluSx SINE Alu -7 305 1 207 289 22 140 chr12 79688051 79688279 -64098176 - L2 LINE L2 -236 3036 2836 337 235 35 0 chr12 79688340 79688425 -64098030 - MIR SINE MIR -17 245 158 429 259 77 14 chr12 79688555 79688698 -64097757 - MIR SINE MIR -91 171 20 457 229 86 9 chr12 79688743 79688848 -64097607 + L2 LINE L2 3193 3305 -8 2310 82 14 0 chr12 79688902 79689195 -64097260 + AluSp SINE Alu 1 297 -16 302 282 34 87 chr12 79689335 79689484 -64096971 - L2 LINE L2 -851 2463 2323 266 242 22 66 chr12 79691507 79691598 -64094857 + L2 LINE L2 3227 3313 0 220 143 0 24 chr12 79691600 79691642 -64094813 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2376 178 8 3 chr12 79692223 79692611 -64093844 - MLT1B LTR MaLR 0 390 1 2220 81 7 7 chr12 79692799 79693122 -64093333 + AluSq SINE Alu 1 323 0 246 270 151 32 chr12 79693627 79693753 -64092702 - MIR3 SINE MIR -5 203 63 21 0 0 0 chr12 79694265 79694286 -64092169 + AT_rich Low_complexity Low_complexity 1 21 0 2176 112 7 0 chr12 79694287 79694581 -64091874 + AluSq SINE Alu 1 296 -17 1666 254 152 42 chr12 79695794 79696748 -64089707 - L2 LINE L2 -33 3280 2204 199 284 0 62 chr12 79697179 79697260 -64089195 + L2 LINE L2 3234 3309 -4 1097 244 84 77 chr12 79698809 79698987 -64087468 - MLT1I LTR MaLR 0 409 234 1747 165 4 4 chr12 79698987 79699284 -64087171 + AluJo SINE Alu 9 305 0 1097 244 84 77 chr12 79699284 79699509 -64086946 - MLT1I LTR MaLR -175 234 2 217 308 142 17 chr12 79701381 79701501 -64084954 - MIR SINE MIR -122 140 6 24 32 0 0 chr12 79702516 79702547 -64083908 + AT_rich Low_complexity Low_complexity 1 31 0 231 379 53 0 chr12 79702746 79702841 -64083614 - L2 LINE L2 -30 3242 3143 2697 95 138 10 chr12 79703064 79703476 -64082979 + MER4C LTR ERV1 1 465 0 6044 160 10 8 chr12 79703657 79705670 -64080785 - L1PB1 LINE L1 -2 6149 4128 434 138 14 166 chr12 79705804 79705863 -64080592 + Charlie8 DNA MER1_type 38 64 -2353 2094 139 0 7 chr12 79705863 79706165 -64080290 + AluSq SINE Alu 1 300 -13 434 138 14 166 chr12 79706165 79706250 -64080205 + Charlie8 DNA MER1_type 64 160 -2257 964 144 8 0 chr12 79706680 79706812 -64079643 + FLAM_C SINE Alu 1 133 0 486 296 75 75 chr12 79706946 79707344 -64079111 - L2 LINE L2 -16 3297 2900 5287 136 45 29 chr12 79707366 79708254 -64078201 - MER4D LTR ERV1 0 903 2 1386 241 71 38 chr12 79708270 79708719 -64077736 - L2 LINE L2 -530 2784 2321 21 0 0 0 chr12 79708719 79708740 -64077715 + AT_rich Low_complexity Low_complexity 1 21 0 253 116 47 0 chr12 79708762 79708805 -64077650 - L2 LINE L2 -980 2334 2290 2336 105 7 0 chr12 79709700 79710006 -64076449 + AluSx SINE Alu 1 308 -4 406 309 23 55 chr12 79710309 79710529 -64075926 - MLT1K LTR MaLR -227 361 149 237 212 91 15 chr12 79710678 79710744 -64075711 - L2 LINE L2 -187 3085 3015 2241 118 0 3 chr12 79710748 79711054 -64075401 - AluSx SINE Alu -7 305 1 228 293 18 140 chr12 79711059 79711288 -64075167 - L2 LINE L2 -236 3036 2836 337 235 35 0 chr12 79711349 79711434 -64075021 - MIR SINE MIR -17 245 158 429 259 77 14 chr12 79711564 79711707 -64074748 - MIR SINE MIR -91 171 20 457 229 86 9 chr12 79711752 79711857 -64074598 + L2 LINE L2 3193 3305 -8 2310 82 14 0 chr12 79711911 79712204 -64074251 + AluSp SINE Alu 1 297 -16 496 300 105 50 chr12 79712344 79712621 -64073834 - L2 LINE L2 -851 2463 2172 985 210 10 10 chr12 79712625 79712825 -64073630 - MER8 DNA MER2_type 0 239 40 190 283 167 8 chr12 79712910 79713030 -64073425 - L2 LINE L2 -1159 2155 2017 309 293 167 40 chr12 79713047 79713443 -64073012 - L2 LINE L2 -2110 1204 759 1379 190 134 102 chr12 79713448 79713484 -64072971 - MLT2B1 LTR ERVL 0 520 487 279 93 0 0 chr12 79713484 79713527 -64072928 + (TG)n Simple_repeat Simple_repeat 1 43 0 1379 190 134 102 chr12 79713527 79713990 -64072465 - MLT2B1 LTR ERVL -33 487 5 180 205 0 26 chr12 79714103 79714142 -64072313 + MER5B DNA MER1_type 12 49 -129 372 240 23 8 chr12 79714378 79714507 -64071948 + (TA)n Simple_repeat Simple_repeat 2 132 0 4203 172 77 36 chr12 79714511 79715390 -64071065 + MER21A LTR ERV1 14 928 -3 477 300 36 41 chr12 79716075 79716229 -64070226 + MIR SINE MIR 44 198 -64 2677 163 45 33 chr12 79716229 79716738 -64069717 - MLT2B2 LTR ERVL 0 515 1 477 300 36 41 chr12 79716738 79716803 -64069652 + MIR SINE MIR 198 262 0 270 306 0 0 chr12 79717491 79717563 -64068892 - L2 LINE L2 0 3313 3242 449 255 83 36 chr12 79717669 79717861 -64068594 - L2 LINE L2 0 3313 3113 378 305 30 15 chr12 79718619 79718750 -64067705 - MER5B DNA MER1_type 0 178 46 2059 105 18 0 chr12 79718759 79719035 -64067420 + AluSg SINE Alu 1 281 -29 22 35 0 0 chr12 79719178 79719207 -64067248 + AT_rich Low_complexity Low_complexity 1 29 0 2074 125 0 7 chr12 79719226 79719521 -64066934 - AluSg SINE Alu -17 293 1 1807 127 25 11 chr12 79719690 79719974 -64066481 - AluSx SINE Alu -24 288 1 427 302 41 46 chr12 79720760 79720984 -64065471 - MIR SINE MIR -11 251 30 312 236 214 0 chr12 79721623 79721712 -64064743 + MER81 DNA DNA 3 110 -4 1422 133 0 0 chr12 79722022 79722218 -64064237 - AluJb SINE Alu -87 225 30 226 150 17 33 chr12 79722354 79722414 -64064041 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 248 135 4 18 chr12 79722481 79722734 -64063721 + AluJo SINE Alu 1 300 0 298 276 237 0 chr12 79722753 79722905 -64063550 + MIR SINE MIR 69 256 -6 809 193 7 0 chr12 79723012 79723162 -64063293 + L1ME3 LINE L1 6012 6162 0 237 180 0 0 chr12 79723339 79723389 -64063066 + (TA)n Simple_repeat Simple_repeat 1 50 0 378 0 0 0 chr12 79724110 79724152 -64062303 + (CCA)n Simple_repeat Simple_repeat 2 43 0 824 228 106 50 chr12 79724210 79724784 -64061671 + HAL1 LINE L1 1796 2389 -118 424 325 85 15 chr12 79725710 79725921 -64060534 + MIR SINE MIR 37 259 -3 2217 99 0 0 chr12 79725922 79726240 -64060215 - AluSp SINE Alu 0 318 1 968 188 11 11 chr12 79727468 79727654 -64058801 + MIR SINE MIR 47 232 -30 197 281 0 0 chr12 79728376 79728440 -64058015 + MIR SINE MIR 89 152 -110 203 262 28 47 chr12 79728528 79728635 -64057820 + MIR SINE MIR 131 235 -27 342 257 144 48 chr12 79728681 79728868 -64057587 + MIR SINE MIR 16 220 -42 285 146 0 0 chr12 79729579 79729627 -64056828 + (GA)n Simple_repeat Simple_repeat 2 49 0 1154 138 11 11 chr12 79729816 79729997 -64056458 + AluSp SINE Alu 133 313 0 2413 147 16 0 chr12 79730094 79730476 -64055979 - MLT1B LTR MaLR -2 388 1 334 292 5 11 chr12 79730707 79730811 -64055644 - MIR SINE MIR -63 145 59 1616 200 66 66 chr12 79733492 79733991 -64052464 + MLT1D LTR MaLR 7 505 0 491 252 10 0 chr12 79734395 79734498 -64051957 + L2 LINE L2 3210 3313 0 779 227 86 58 chr12 79735651 79735977 -64050478 + Charlie8 DNA MER1_type 83 417 -2000 329 346 23 15 chr12 79736806 79736939 -64049516 + L2 LINE L2 2716 2849 -465 424 282 216 0 chr12 79736979 79737160 -64049295 + MIR SINE MIR 13 232 -30 339 355 59 41 chr12 79737293 79737583 -64048872 + L2 LINE L2 2976 3270 -2 309 279 141 87 chr12 79737985 79738392 -64048063 - L2 LINE L2 -2 3270 2779 212 250 60 70 chr12 79738691 79738791 -64047664 + L2 LINE L2 3208 3306 -7 247 267 168 20 chr12 79738921 79739022 -64047433 + MIR SINE MIR 89 204 -58 855 168 78 6 chr12 79739131 79739310 -64047145 - LTR47A LTR ERVL 0 452 261 1067 267 116 17 chr12 79739609 79739953 -64046502 - MLT1G LTR MaLR -18 572 195 1872 73 0 13 chr12 79739982 79740214 -64046241 + AluY SINE Alu 73 301 -10 2106 135 45 33 chr12 79740214 79740758 -64045697 + L1PB3 LINE L1 5490 6147 -7 679 284 10 5 chr12 79740769 79740963 -64045492 - MLT1G LTR MaLR -386 204 10 4057 160 47 3 chr12 79741098 79741862 -64044593 - L1MA8 LINE L1 -5 6286 5489 358 371 77 7 chr12 79742569 79742712 -64043743 + MIR3 SINE MIR 25 177 -31 378 275 145 7 chr12 79742870 79743008 -64043447 - MIR SINE MIR -105 157 1 26 50 0 0 chr12 79743671 79743711 -64042744 + AT_rich Low_complexity Low_complexity 1 40 0 729 219 60 51 chr12 79744511 79744726 -64041729 - MER20 DNA MER1_type 0 219 3 2259 118 0 0 chr12 79744925 79745229 -64041226 + AluSg SINE Alu 1 304 -6 1972 156 7 3 chr12 79745871 79746166 -64040289 - AluJb SINE Alu -16 296 1 246 321 12 0 chr12 79746393 79746474 -64039981 + MIR SINE MIR 181 262 0 274 286 191 0 chr12 79746656 79746761 -64039694 - MIR SINE MIR -118 144 20 273 57 0 0 chr12 79747005 79747040 -64039415 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 470 147 168 77 chr12 79747331 79747474 -64038981 + MIR SINE MIR 107 262 0 28 29 0 0 chr12 79747495 79747530 -64038925 + AT_rich Low_complexity Low_complexity 1 35 0 1783 163 7 14 chr12 79747530 79747825 -64038630 - AluJb SINE Alu -19 293 1 28 29 0 0 chr12 79749090 79749125 -64037330 + AT_rich Low_complexity Low_complexity 1 35 0 4586 185 3 13 chr12 79749575 79750538 -64035917 - L1P LINE L1 -1239 4907 3953 5848 106 17 13 chr12 79750538 79751536 -64034919 + L1PA13 LINE L1 5153 6158 -5 4586 185 3 13 chr12 79751536 79751561 -64034894 - L1P LINE L1 -2193 3953 3929 407 305 115 31 chr12 79751719 79751945 -64034510 + MIR SINE MIR 18 262 0 341 92 77 2 chr12 79752161 79752240 -64034215 + L1P LINE L1 5240 5323 -823 2188 119 36 30 chr12 79753099 79753461 -64032994 + THE1B LTR MaLR 1 364 0 744 347 95 43 chr12 79753688 79754977 -64031478 - L2 LINE L2 -1729 1585 229 406 298 37 48 chr12 79755758 79755946 -64030509 + MIR SINE MIR 77 262 0 368 368 28 33 chr12 79755960 79756172 -64030283 - MIR SINE MIR -32 230 20 313 416 0 0 chr12 79756934 79757059 -64029396 - MIR3 SINE MIR -30 178 54 238 294 126 56 chr12 79757167 79757310 -64029145 + MIR SINE MIR 98 250 -12 656 284 73 17 chr12 79760543 79760775 -64025680 - MIR SINE MIR 0 262 18 2191 82 13 43 chr12 79761843 79762147 -64024308 - AluSc SINE Alu -14 295 1 756 262 44 24 chr12 79762180 79762428 -64024027 - MLT1G1 LTR MaLR -342 253 1 333 231 74 41 chr12 79762661 79762782 -64023673 - L1MC4 LINE L1 0 8042 7918 2128 219 78 27 chr12 79762836 79763749 -64022706 - L1MC4 LINE L1 -234 7808 6774 476 248 68 0 chr12 79764394 79764511 -64021944 + MIR3 SINE MIR 73 197 -11 352 189 90 36 chr12 79765463 79765574 -64020881 - Charlie8 DNA MER1_type -2217 200 84 488 176 0 29 chr12 79768129 79768231 -64018224 - FAM SINE Alu 0 185 87 631 146 0 0 chr12 79768322 79768425 -64018030 - AluJb SINE Alu 0 312 210 2289 104 3 3 chr12 79768425 79768734 -64017721 - AluSx SINE Alu -3 309 1 1340 265 57 26 chr12 79768817 79768899 -64017556 - L1MC4a LINE L1 -1741 6067 5989 866 213 6 6 chr12 79768899 79769073 -64017382 - FAM SINE Alu -1 174 1 1340 265 57 26 chr12 79769073 79769567 -64016888 - L1MC4a LINE L1 -1819 5989 5473 682 231 148 48 chr12 79769882 79770079 -64016376 - MIR SINE MIR 0 262 37 458 229 37 0 chr12 79770079 79770100 -64016355 - MER81 DNA DNA -1 113 94 204 0 83 0 chr12 79770100 79770136 -64016319 + T-rich Low_complexity Low_complexity 2 40 0 458 229 37 0 chr12 79770136 79770223 -64016232 - MER81 DNA DNA -20 94 1 682 231 148 48 chr12 79770223 79770254 -64016201 - MIR SINE MIR -225 37 11 455 258 226 0 chr12 79770561 79770716 -64015739 - MIR SINE MIR -49 213 24 263 294 34 47 chr12 79770949 79771083 -64015372 + MIR SINE MIR 52 183 -62 2427 95 10 51 chr12 79771149 79771540 -64014915 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr12 79771594 79771615 -64014840 + AT_rich Low_complexity Low_complexity 1 21 0 1879 223 77 27 chr12 79771673 79772193 -64014262 + MLT1E2 LTR MaLR 15 560 -66 4801 193 20 3 chr12 79772600 79773947 -64012508 + L1M2 LINE L1 4264 5633 -679 560 255 120 35 chr12 79775742 79775942 -64010513 - L2 LINE L2 0 3313 3097 374 306 69 46 chr12 79776157 79776330 -64010125 - MIR3 SINE MIR -5 203 27 1978 132 7 20 chr12 79777372 79777698 -64008757 - AluSx SINE Alu 0 312 1 2418 73 0 3 chr12 79777713 79778014 -64008441 - AluY SINE Alu -11 300 1 2113 126 0 10 chr12 79778729 79779031 -64007424 + AluSx SINE Alu 1 299 -13 1746 176 29 0 chr12 79779228 79779604 -64006851 + L1 LINE L1 4360 4746 -1400 2099 167 43 41 chr12 79779605 79779975 -64006480 + L1MD1 LINE L1 5490 5863 -379 2484 60 13 0 chr12 79779975 79780274 -64006181 - AluSp SINE Alu -8 305 3 2099 167 43 41 chr12 79780274 79780388 -64006067 + L1MD1 LINE L1 5863 5975 -267 387 146 101 0 chr12 79780388 79780477 -64005978 + MER4A LTR ERV1 1 98 -566 * 1508 167 13 71 chr12 79780472 79780844 -64005611 + MER4A LTR ERV1 256 664 0 1130 143 48 14 chr12 79780848 79781057 -64005398 + L1MD1 LINE L1 6027 6242 0 264 366 16 24 chr12 79781428 79781551 -64004904 - MER91A DNA MER1_type -73 123 2 604 334 56 52 chr12 79781557 79782202 -64004253 + L2 LINE L2 2549 3235 -37 534 168 0 0 chr12 79783083 79783190 -64003265 - L1MA4 LINE L1 -3 6297 6191 1246 227 84 22 chr12 79783231 79783358 -64003097 - MER58B DNA MER1_type -2079 341 223 8308 123 9 8 chr12 79783358 79783808 -64002647 - HSMAR2 DNA Mariner -1 1301 853 2330 102 3 0 chr12 79783808 79784112 -64002343 + AluSp SINE Alu 1 305 -8 8308 123 9 8 chr12 79784112 79784960 -64001495 - HSMAR2 DNA Mariner -449 853 2 1246 227 84 22 chr12 79784960 79785153 -64001302 - MER58B DNA MER1_type -2197 223 1 295 238 31 11 chr12 79785202 79785336 -64001119 - MER5A DNA MER1_type 0 189 10 218 394 26 18 chr12 79785401 79785627 -64000828 - L2 LINE L2 -646 2668 2441 1916 129 8 66 chr12 79785923 79786302 -64000153 - MER46B DNA MER2_type -3 233 2 2245 126 3 0 chr12 79786433 79786742 -63999713 + AluSp SINE Alu 1 310 -3 618 364 93 19 chr12 79787301 79787730 -63998725 + L2 LINE L2 2811 3271 -1 636 297 40 22 chr12 79787947 79788086 -63998369 - MIR SINE MIR -18 244 98 1460 126 65 13 chr12 79788086 79788316 -63998139 + AluJb SINE Alu 61 302 -10 636 297 40 22 chr12 79788316 79788398 -63998057 - MIR SINE MIR -164 98 19 249 231 137 51 chr12 79789130 79789247 -63997208 + MIR SINE MIR 63 189 -73 401 312 57 25 chr12 79789628 79789837 -63996618 - MIR SINE MIR -40 222 9 342 302 43 71 chr12 79790136 79790338 -63996117 - L2 LINE L2 -208 3064 2869 3452 158 10 16 chr12 79790338 79790947 -63995508 + MER6A DNA MER2_type 1 605 0 342 302 43 71 chr12 79790947 79790999 -63995456 - L2 LINE L2 -403 2869 2817 664 233 98 47 chr12 79791905 79792120 -63994335 - MIR SINE MIR -21 241 16 441 357 16 16 chr12 79792123 79792308 -63994147 - MER5A DNA MER1_type -4 185 1 292 94 38 0 chr12 79792445 79792498 -63993957 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1897 120 34 0 chr12 79792636 79792903 -63993552 - AluSx SINE Alu -36 276 1 1307 266 19 66 chr12 79794053 79794432 -63992023 + L1MEc LINE L1 36 431 -5965 1845 116 49 14 chr12 79794432 79794716 -63991739 - AluSx SINE Alu -16 296 3 1307 266 19 66 chr12 79794716 79794728 -63991727 + L1MEc LINE L1 431 442 -5954 2399 89 3 0 chr12 79794728 79795030 -63991425 - AluSg1 SINE Alu -6 303 1 1307 266 19 66 chr12 79795030 79795170 -63991285 + L1MEc LINE L1 442 543 -5853 224 75 0 25 chr12 79795170 79795210 -63991245 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 13867 24 0 0 chr12 79795210 79797640 -63988815 - L1PA3 LINE L1 -24 6131 3702 2334 238 25 28 chr12 79797634 79798221 -63988234 + L1MEc LINE L1 529 1115 -5281 * 2246 120 3 3 chr12 79798221 79798530 -63987925 + AluSx SINE Alu 1 309 -3 2334 238 25 28 chr12 79798530 79798664 -63987791 + L1MEc LINE L1 1115 1248 -5148 432 0 0 0 chr12 79798720 79798768 -63987687 + (TA)n Simple_repeat Simple_repeat 2 49 0 1467 189 18 92 chr12 79798771 79799069 -63987386 + L1ME1 LINE L1 5620 5870 -296 2090 130 0 37 chr12 79799069 79799393 -63987062 - AluSx SINE Alu 0 312 1 1467 189 18 92 chr12 79799393 79799582 -63986873 + L1ME1 LINE L1 5870 6071 -95 22 56 0 0 chr12 79800608 79800644 -63985811 + AT_rich Low_complexity Low_complexity 1 36 0 2151 135 10 0 chr12 79800712 79801009 -63985446 + AluSx SINE Alu 1 300 -12 1003 164 24 19 chr12 79801060 79801267 -63985188 - MER3 DNA MER1_type -1 208 1 251 310 138 0 chr12 79801327 79801414 -63985041 - MIR SINE MIR -76 132 34 1848 120 15 7 chr12 79802914 79803188 -63983267 + AluSg1 SINE Alu 24 299 -10 297 245 78 78 chr12 79803192 79803294 -63983161 - L2 LINE L2 0 3313 3212 24 53 0 0 chr12 79803478 79803516 -63982939 + AT_rich Low_complexity Low_complexity 1 38 0 249 298 30 76 chr12 79803795 79803926 -63982529 - MIR SINE MIR -68 140 16 546 144 10 10 chr12 79805283 79805380 -63981075 + L1MC1 LINE L1 6237 6333 0 331 333 72 23 chr12 79805396 79805586 -63980869 + MIR3 SINE MIR 8 205 -3 290 274 12 36 chr12 79806775 79806859 -63979596 - MER5A DNA MER1_type 0 189 108 523 82 0 0 chr12 79806961 79807034 -63979421 - AluS SINE Alu -240 73 1 23 33 0 0 chr12 79807194 79807224 -63979231 + AT_rich Low_complexity Low_complexity 1 30 0 693 201 43 0 chr12 79807226 79807390 -63979065 + L1MD2 LINE L1 6028 6198 -161 446 186 29 0 chr12 79807390 79807489 -63978966 + L1MD1 LINE L1 6132 6236 -6 1736 148 72 0 chr12 79807530 79807807 -63978648 + AluJb SINE Alu 7 303 -9 2281 88 3 10 chr12 79807807 79808103 -63978352 + AluSp SINE Alu 1 295 -18 321 299 57 19 chr12 79808367 79808524 -63977931 - MIR SINE MIR -16 246 84 724 243 11 116 chr12 79808884 79808959 -63977496 - MIR SINE MIR -14 248 167 1882 151 11 3 chr12 79808959 79809244 -63977211 + AluSx SINE Alu 1 287 -25 853 129 8 23 chr12 79809252 79809384 -63977071 + FLAM_C SINE Alu 2 131 -2 724 243 11 116 chr12 79809384 79809575 -63976880 - MIR SINE MIR -102 160 2 2136 113 0 7 chr12 79809802 79810104 -63976351 + AluSx SINE Alu 1 300 -12 23 54 0 0 chr12 79810206 79810243 -63976212 + AT_rich Low_complexity Low_complexity 1 37 0 367 300 133 8 chr12 79810253 79810373 -63976082 + L2 LINE L2 3179 3313 0 1721 167 156 7 chr12 79811195 79811645 -63974810 - Charlie1b DNA MER1_type -1 522 6 29 28 0 0 chr12 79812137 79812173 -63974282 + GC_rich Low_complexity Low_complexity 1 36 0 910 50 328 50 chr12 79813628 79813808 -63972647 - MER30 DNA MER1_type 0 230 1 569 228 24 0 chr12 79815606 79815729 -63970726 - FLAM_C SINE Alu -4 129 4 288 305 172 7 chr12 79815803 79815954 -63970501 - MIR SINE MIR -2 260 85 1975 161 74 27 chr12 79816049 79816454 -63970001 - MSTC LTR MaLR -4 424 1 1157 160 5 28 chr12 79816564 79816777 -63969678 - Tigger3(Golem) DNA MER2_type -1 3028 2821 1487 137 120 0 chr12 79816777 79817069 -63969386 - Tigger3(Golem) DNA MER2_type -2693 336 10 1679 149 36 46 chr12 79817199 79817501 -63968954 + AluJb SINE Alu 1 299 -13 1384 148 113 0 chr12 79817713 79817942 -63968513 - AluJo SINE Alu -57 255 1 514 257 114 98 chr12 79817945 79818567 -63967888 - L1MEd LINE L1 -4759 1551 904 306 305 139 54 chr12 79818883 79819152 -63967303 - L1MEd LINE L1 -5757 362 58 2073 126 13 3 chr12 79819152 79819461 -63966994 - AluSx SINE Alu 0 312 1 306 305 139 54 chr12 79819461 79819522 -63966933 - L1MEd LINE L1 -6061 58 4 221 241 28 128 chr12 79819632 79819773 -63966682 - MER5A DNA MER1_type -2 187 61 1186 144 65 5 chr12 79820221 79820436 -63966019 + Tigger3(Golem) DNA MER2_type 2811 3038 0 396 0 0 0 chr12 79820569 79820613 -63965842 + (TA)n Simple_repeat Simple_repeat 2 45 0 215 286 116 9 chr12 79820960 79821072 -63965383 - L2 LINE L2 -257 3056 2933 772 169 0 0 chr12 79821150 79821280 -63965175 - FLAM_C SINE Alu -2 131 2 258 182 0 36 chr12 79821284 79821339 -63965116 - L1ME LINE L1 -509 5612 5560 571 170 0 128 chr12 79821844 79821985 -63964470 - FLAM_A SINE Alu -10 123 1 23 54 0 0 chr12 79822865 79822902 -63963553 + AT_rich Low_complexity Low_complexity 1 37 0 1609 232 199 70 chr12 79824115 79825767 -63960688 - HAL1 LINE L1 -631 1876 13 308 222 0 37 chr12 79825910 79825989 -63960466 - MER58 DNA MER1_type -3 2417 2342 367 121 11 154 chr12 79825989 79826080 -63960375 - MER2 DNA MER2_type 0 345 268 536 230 48 0 chr12 79826148 79826274 -63960181 - FLAM_C SINE Alu -11 132 1 1022 142 25 34 chr12 79826274 79826478 -63959977 - MER2 DNA MER2_type -143 202 1 593 150 94 8 chr12 79826478 79826605 -63959850 - MER58A DNA MER1_type 0 143 6 1745 151 53 14 chr12 79826755 79827040 -63959415 + AluSx SINE Alu 1 296 -16 595 267 81 83 chr12 79827503 79827863 -63958592 - MLT1J LTR MaLR -117 394 36 396 0 0 0 chr12 79828383 79828427 -63958028 + (TG)n Simple_repeat Simple_repeat 2 45 0 393 330 108 45 chr12 79830160 79830624 -63955831 - L1ME3A LINE L1 -301 5869 5377 735 284 179 61 chr12 79830648 79831006 -63955449 - L1ME3A LINE L1 -812 5334 5019 447 68 0 0 chr12 79831006 79831065 -63955390 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 735 284 179 61 chr12 79831065 79831849 -63954606 - L1ME3A LINE L1 -1127 5019 4058 236 225 141 0 chr12 79832001 79832072 -63954383 - L1ME3A LINE L1 -2304 3842 3762 330 265 145 64 chr12 79832813 79833014 -63953441 - L1ME3A LINE L1 -3624 2522 2296 1037 209 180 8 chr12 79833014 79833258 -63953197 - AluJb SINE Alu -16 286 1 330 265 145 64 chr12 79833258 79833305 -63953150 - L1ME3A LINE L1 -3850 2296 2254 1879 158 10 0 chr12 79833356 79833647 -63952808 - AluJb SINE Alu -18 294 1 509 317 128 12 chr12 79834074 79834317 -63952138 - HAL1 LINE L1 -849 1658 1388 2468 101 111 0 chr12 79835598 79836004 -63950451 + L1PA14 LINE L1 5710 6160 -1 1705 188 3 10 chr12 79836059 79836352 -63950103 - AluJb SINE Alu -21 291 1 378 283 68 45 chr12 79837985 79838250 -63948205 - L1ME LINE L1 -336 5785 5515 2243 97 0 3 chr12 79838477 79838775 -63947680 + AluSg SINE Alu 1 297 -13 291 54 0 0 chr12 79838934 79838971 -63947484 + (TA)n Simple_repeat Simple_repeat 1 37 0 1271 208 39 7 chr12 79839861 79840140 -63946315 - AluJo SINE Alu -19 293 6 1729 120 43 4 chr12 79840175 79840433 -63946022 - AluSx SINE Alu -44 268 1 206 247 239 0 chr12 79840498 79840584 -63945871 - MIR SINE MIR -65 143 48 22 0 0 0 chr12 79842047 79842069 -63944386 + AT_rich Low_complexity Low_complexity 1 22 0 1885 166 0 0 chr12 79842834 79843124 -63943331 + AluSx SINE Alu 1 290 -22 261 221 206 0 chr12 79844961 79845029 -63941426 + L2 LINE L2 3185 3266 -6 472 247 22 55 chr12 79845799 79845981 -63940474 + MER104 DNA MER2_type 1 176 -4 249 225 14 0 chr12 79846012 79846083 -63940372 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 254 325 149 9 chr12 79846189 79846303 -63940152 + MIR SINE MIR 19 148 -60 181 231 0 0 chr12 79846526 79846565 -63939890 - L2 LINE L2 -24 3289 3251 2115 161 71 29 chr12 79846565 79846646 -63939809 + MLT1C LTR MaLR 1 77 -390 1745 153 55 94 chr12 79846646 79847122 -63939333 - MSTB2 LTR MaLR 0 457 1 2115 161 71 29 chr12 79847122 79847488 -63938967 + MLT1C LTR MaLR 77 467 0 427 282 29 57 chr12 79847549 79847758 -63938697 - L2 LINE L2 -58 3255 3053 30 0 0 0 chr12 79847844 79847874 -63938581 + AT_rich Low_complexity Low_complexity 1 30 0 780 194 0 0 chr12 79847878 79848007 -63938448 - AluJo SINE Alu -59 253 125 1854 176 17 0 chr12 79848014 79848315 -63938140 - AluJo SINE Alu -6 306 1 259 314 83 16 chr12 79848322 79848443 -63938012 - MIR SINE MIR -119 143 15 486 289 38 30 chr12 79849074 79849100 -63937355 + L1ME4a LINE L1 5461 5485 -636 2481 49 3 0 chr12 79849100 79849407 -63937048 + AluY SINE Alu 1 308 -3 486 289 38 30 chr12 79849407 79849643 -63936812 + L1ME4a LINE L1 5485 5725 -396 2345 101 3 0 chr12 79849667 79849975 -63936480 + AluSc SINE Alu 1 309 0 324 211 106 42 chr12 79850263 79850405 -63936050 + L1ME4a LINE L1 5971 6121 0 189 346 29 37 chr12 79850578 79850714 -63935741 + L3b LINE CR1 1318 1452 -131 183 129 0 0 chr12 79851387 79851418 -63935037 + (CA)n Simple_repeat Simple_repeat 2 32 0 665 255 51 32 chr12 79851449 79851665 -63934790 + MIR SINE MIR 15 234 -28 2634 45 0 0 chr12 79852038 79852348 -63934107 - AluY SINE Alu -1 310 1 323 218 174 10 chr12 79854353 79854450 -63932005 + MIR SINE MIR 53 162 -64 402 264 98 21 chr12 79854558 79854793 -63931662 - MER112 DNA MER1_type -3 253 1 1721 175 15 6 chr12 79855386 79855712 -63930743 - L1PA16 LINE L1 -16 6150 5822 2162 28 0 0 chr12 79855714 79855962 -63930493 - AluYa5 SINE Alu -19 292 45 4467 82 23 58 chr12 79855962 79856756 -63929699 - SVA Other Other -192 1194 429 247 203 27 0 chr12 79856788 79856862 -63929593 + CT-rich Low_complexity Low_complexity 2 77 0 436 180 22 29 chr12 79856884 79857023 -63929432 + C-rich Low_complexity Low_complexity 6 143 0 201 39 0 0 chr12 79857531 79857557 -63928898 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2225 111 3 0 chr12 79857762 79858060 -63928395 - AluSx SINE Alu -1 311 13 581 177 124 0 chr12 79858141 79858254 -63928201 + FLAM_A SINE Alu 1 127 -6 1505 184 59 21 chr12 79858784 79859072 -63927383 - AluJo SINE Alu -13 299 1 23 0 0 0 chr12 79862411 79862434 -63924021 + AT_rich Low_complexity Low_complexity 1 23 0 260 200 40 0 chr12 79865139 79865189 -63921266 + Tigger5 DNA MER2_type 1 52 -2271 288 233 0 0 chr12 79865196 79865256 -63921199 + Tigger5 DNA MER2_type 2234 2293 -30 1949 134 0 54 chr12 79865487 79865801 -63920654 - AluSx SINE Alu -15 297 1 189 0 0 0 chr12 79866305 79866326 -63920129 + (T)n Simple_repeat Simple_repeat 1 21 0 1229 151 24 5 chr12 79866351 79866557 -63919898 - AluSx SINE Alu -102 210 1 496 284 121 8 chr12 79866923 79867162 -63919293 - L1MC4a LINE L1 -991 6817 6552 500 273 8 0 chr12 79868070 79868198 -63918257 - FLAM_C SINE Alu -8 135 7 681 185 197 0 chr12 79868738 79868916 -63917539 - Tigger2a DNA MER2_type 0 444 232 1483 154 0 13 chr12 79868941 79869175 -63917280 + AluSx SINE Alu 1 231 -81 576 148 23 0 chr12 79869179 79869267 -63917188 + AluSg/x SINE Alu 190 279 -31 228 135 0 0 chr12 79869267 79869304 -63917151 + (TG)n Simple_repeat Simple_repeat 1 37 0 576 184 135 6 chr12 79869304 79869467 -63916988 - Tigger2a DNA MER2_type -249 185 2 313 138 0 33 chr12 79869504 79869573 -63916882 - MLT1G1 LTR MaLR -1 594 475 187 233 198 12 chr12 79870027 79870113 -63916342 - MIR SINE MIR -108 154 53 1927 115 22 4 chr12 79872704 79873011 -63913444 - AluSx SINE Alu 0 312 1 1109 153 70 4 chr12 79873828 79874056 -63912399 + L1MB3 LINE L1 5938 6180 -3 2294 124 0 3 chr12 79874644 79874950 -63911505 - AluSx SINE Alu -7 305 1 5526 89 14 11 chr12 79875917 79876162 -63910293 - L1P LINE L1 -2709 3437 3194 312 44 22 0 chr12 79876162 79876207 -63910248 + (TTTG)n Simple_repeat Simple_repeat 2 164 0 2229 102 3 0 chr12 79876207 79876490 -63909965 - AluSp SINE Alu -27 286 3 5526 89 14 11 chr12 79876490 79877051 -63909404 - L1P LINE L1 -2951 3195 2628 7043 58 14 2 chr12 79877051 79878355 -63908100 + L1PA7 LINE L1 4820 6134 -20 222 37 0 0 chr12 79878355 79878382 -63908073 + (TA)n Simple_repeat Simple_repeat 2 28 0 1358 187 32 22 chr12 79878579 79878895 -63907560 + MER33 DNA MER1_type 6 324 0 532 295 23 0 chr12 79879630 79879803 -63906652 + MER5B DNA MER1_type 1 177 -1 850 264 136 26 chr12 79880660 79881012 -63905443 - L2 LINE L2 0 3313 2923 242 133 67 0 chr12 79881027 79881072 -63905383 - MER53 DNA DNA -1 188 141 459 202 0 0 chr12 79881074 79881178 -63905277 + (CA)n Simple_repeat Simple_repeat 1 104 0 1587 182 7 14 chr12 79881182 79881457 -63904998 - AluJo SINE Alu -26 286 14 255 136 51 51 chr12 79881458 79881517 -63904938 + MER53 DNA DNA 72 130 -59 2143 123 3 0 chr12 79881582 79881883 -63904572 - AluSx SINE Alu -10 302 1 1078 246 176 50 chr12 79881883 79882440 -63904015 - L2 LINE L2 -396 2918 2292 1272 186 51 48 chr12 79882870 79883181 -63903274 + AluJb SINE Alu 1 312 0 859 162 7 7 chr12 79883270 79883406 -63903049 - AluJo SINE Alu -176 136 1 225 0 0 0 chr12 79883760 79883785 -63902670 + (CCCCCT)n Simple_repeat Simple_repeat 2 26 0 225 94 0 0 chr12 79884595 79884627 -63901828 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 417 297 203 10 chr12 79884656 79884848 -63901607 - MIR SINE MIR -16 246 18 2218 96 7 0 chr12 79884895 79885187 -63901268 + AluY SINE Alu 1 294 -17 761 298 32 20 chr12 79886067 79886319 -63900136 + MIR SINE MIR 5 259 -3 957 112 8 30 chr12 79888166 79888300 -63898155 + FLAM_C SINE Alu 3 133 0 200 86 29 0 chr12 79888307 79888342 -63898113 + (TG)n Simple_repeat Simple_repeat 2 37 0 2106 127 3 3 chr12 79888446 79888745 -63897710 + AluSx SINE Alu 1 299 -13 403 219 161 78 chr12 79888892 79889084 -63897371 - L1ME3A LINE L1 0 6170 5963 330 336 115 23 chr12 79889809 79890026 -63896429 - MIR SINE MIR -6 256 20 1370 163 122 11 chr12 79890173 79890443 -63896012 - AluJo SINE Alu -12 300 1 1926 141 0 0 chr12 79890484 79890753 -63895702 + AluSx SINE Alu 5 273 -39 235 247 54 54 chr12 79891720 79891747 -63894708 - L2 LINE L2 0 3313 3287 2669 46 0 0 chr12 79891747 79892052 -63894403 + AluY SINE Alu 1 305 -6 235 247 54 54 chr12 79892052 79892117 -63894338 - L2 LINE L2 -25 3288 3221 313 282 205 0 chr12 79892499 79892616 -63893839 - MIR3 SINE MIR -6 202 62 366 326 71 0 chr12 79892762 79892903 -63893552 - MIR SINE MIR -10 252 102 1569 188 14 11 chr12 79892944 79893231 -63893224 + AluJo SINE Alu 1 288 -24 3428 182 95 30 chr12 79893241 79894066 -63892389 + L1MC4a LINE L1 6905 8013 -29 907 188 36 30 chr12 79894089 79894254 -63892201 - FRAM SINE Alu 0 166 1 2288 132 52 19 chr12 79894281 79894644 -63891811 - THE1C LTR MaLR 0 375 1 240 338 0 14 chr12 79894784 79894855 -63891600 - MIR SINE MIR -165 97 28 242 345 117 21 chr12 79895487 79895632 -63890823 - L2 LINE L2 -39 3233 3075 364 292 60 23 chr12 79896778 79896971 -63889484 - MIR3 SINE MIR -52 210 16 299 236 162 27 chr12 79897046 79897194 -63889261 - MER20B DNA MER1_type -609 174 7 498 231 209 0 chr12 79897538 79897672 -63888783 + MER5A DNA MER1_type 7 168 -21 1866 158 0 3 chr12 79897672 79897969 -63888486 - AluJb SINE Alu -16 296 1 2462 79 3 0 chr12 79898101 79898406 -63888049 - AluY SINE Alu -5 306 1 663 283 16 0 chr12 79898704 79898888 -63887567 + MIR SINE MIR 46 232 -30 795 243 19 24 chr12 79899153 79899359 -63887096 + MIR SINE MIR 58 262 0 240 287 31 101 chr12 79901921 79902050 -63884405 + L2 LINE L2 3153 3272 0 564 313 44 6 chr12 79902070 79902252 -63884203 + MIR SINE MIR 36 224 -38 393 75 0 0 chr12 79902666 79902719 -63883736 + (TG)n Simple_repeat Simple_repeat 2 54 0 383 269 123 8 chr12 79903118 79903248 -63883207 - MIR SINE MIR -116 146 2 1846 109 78 7 chr12 79903380 79903664 -63882791 + AluSg1 SINE Alu 1 304 -5 288 327 0 0 chr12 79903716 79903817 -63882638 - MIR SINE MIR -10 252 152 1671 181 6 16 chr12 79903944 79904258 -63882197 + AluJo SINE Alu 1 311 -1 396 303 200 10 chr12 79904464 79904659 -63881796 - MIR SINE MIR 0 262 31 2044 131 0 0 chr12 79904789 79905096 -63881359 + AluSg SINE Alu 1 307 0 337 290 11 0 chr12 79906255 79906348 -63880107 + L3b LINE CR1 1337 1430 -153 567 281 65 11 chr12 79907125 79907310 -63879145 + MIR SINE MIR 10 204 -58 446 316 116 5 chr12 79907396 79907586 -63878869 - MIR SINE MIR -10 252 42 630 124 0 86 chr12 79907603 79907708 -63878747 - FLAM_C SINE Alu -35 108 13 1518 192 0 3 chr12 80009160 80009451 -63777004 + HERVH LTR ERV1 4860 5149 -2564 1171 167 19 0 chr12 80009452 80009668 -63776787 + HERVH LTR ERV1 5600 5819 -1894 2013 113 47 21 chr12 80009668 80010048 -63776407 + HERVH LTR ERV1 7324 7713 0 515 110 0 110 chr12 80010048 80010166 -63776289 + LTR7 LTR ERV1 1 105 -345 2165 53 10 7 chr12 80010199 80010502 -63775953 - LTR7 LTR ERV1 -2 448 145 7058 233 35 25 chr12 80010602 80011568 -63774887 - L1M2 LINE L1 -4916 1933 978 2235 142 17 8 chr12 80011568 80011927 -63774528 - THE1B LTR MaLR -2 362 1 7058 233 35 25 chr12 80011927 80012870 -63773585 - L1M2 LINE L1 -5871 978 6 4970 75 29 7 chr12 80012980 80013697 -63772758 - L1PA8A LINE L1 0 6131 5399 655 276 53 3 chr12 80014504 80014719 -63771736 + MIR SINE MIR 19 244 -18 234 0 0 0 chr12 80015061 80015087 -63771368 + (A)n Simple_repeat Simple_repeat 1 26 0 2040 84 77 7 chr12 80015256 80015543 -63770912 + AluY SINE Alu 1 307 -4 186 289 244 11 chr12 80016247 80016337 -63770118 - MER5A DNA MER1_type 0 189 79 241 266 25 0 chr12 80016417 80016496 -63769959 + (CAGA)n Simple_repeat Simple_repeat 1 81 0 539 264 241 24 chr12 80018706 80019047 -63767408 + MLT1J2 LTR MaLR 32 446 -4 231 189 0 0 chr12 80019202 80019255 -63767200 - MLT1K LTR MaLR -13 575 523 235 149 0 21 chr12 80019336 80019383 -63767072 + (TC)n Simple_repeat Simple_repeat 1 46 0 249 159 0 0 chr12 80019525 80019588 -63766867 + GA-rich Low_complexity Low_complexity 2 64 0 2228 121 3 0 chr12 80019838 80020145 -63766310 - AluSx SINE Alu -4 308 1 474 277 40 90 chr12 80020329 80020669 -63765786 - MLT1H1 LTR MaLR -237 302 2 247 115 16 49 chr12 80020743 80020804 -63765651 - MLT2B1 LTR ERVL 0 520 462 189 107 0 0 chr12 80020807 80020835 -63765620 + (CATATA)n Simple_repeat Simple_repeat 4 31 0 291 267 40 0 chr12 80020835 80020910 -63765545 - MLT2C2 LTR ERVL -40 424 347 2127 200 73 4 chr12 80020953 80021434 -63765021 + MER67D LTR ERV1 1 514 0 505 341 53 39 chr12 80021463 80022032 -63764423 - L1MEc LINE L1 -5701 695 119 21 0 0 0 chr12 80022115 80022136 -63764319 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 80022659 80022680 -63763775 + (A)n Simple_repeat Simple_repeat 1 21 0 469 171 0 0 chr12 80022746 80022828 -63763627 + MLT1E3 LTR MaLR 173 254 -400 15548 215 31 20 chr12 80022851 80029049 -63757406 - L1PA15 LINE L1 -8 7595 1422 1057 263 13 13 chr12 80029179 80029483 -63756972 + MLT1E3 LTR MaLR 319 622 -2 1686 186 6 3 chr12 80029767 80030094 -63756361 - MER47A DNA MER2_type 0 366 39 261 163 0 0 chr12 80030121 80030170 -63756285 + (TA)n Simple_repeat Simple_repeat 2 50 0 633 187 0 20 chr12 80030343 80030493 -63755962 - HERVH LTR ERV1 -1967 5746 5600 4041 142 5 1 chr12 80030494 80031154 -63755301 - HERVH LTR ERV1 -2564 5149 4488 3009 130 6 0 chr12 80031156 80031647 -63754808 - HERVH LTR ERV1 -3720 3993 3500 928 120 7 0 chr12 80031646 80031796 -63754659 - HERVH LTR ERV1 -4423 3290 3140 * 18436 99 7 42 chr12 80031775 80034877 -63751578 - HERVH LTR ERV1 -4718 2995 1 3401 71 0 7 chr12 80034879 80035330 -63751125 - LTR7 LTR ERV1 -2 448 1 379 364 57 40 chr12 80035443 80036022 -63750433 - HERVL LTR ERVL -1340 4314 3726 1850 173 73 11 chr12 80036626 80037008 -63749447 + MSTA LTR MaLR 23 428 0 255 246 0 0 chr12 80037254 80037315 -63749140 + L2 LINE L2 3244 3304 -9 425 279 17 90 chr12 80038095 80038328 -63748127 - MIR SINE MIR 0 262 47 480 296 56 55 chr12 80038494 80038858 -63747597 - L2 LINE L2 -174 3139 2773 510 286 16 0 chr12 80040261 80040387 -63746068 - L2 LINE L2 -522 2792 2665 992 149 0 0 chr12 80041213 80041381 -63745074 + L1PA15 LINE L1 5996 6163 -2 266 324 21 0 chr12 80041497 80041642 -63744813 - L1ME LINE L1 -357 5764 5617 684 300 28 12 chr12 80041749 80041999 -63744456 - MIR SINE MIR -2 260 7 1164 242 36 64 chr12 80043091 80043681 -63742774 + L1MC5 LINE L1 6871 7443 -518 27 49 0 0 chr12 80043710 80043751 -63742704 + AT_rich Low_complexity Low_complexity 1 41 0 327 270 16 40 chr12 80043901 80044027 -63742428 - L2 LINE L2 -72 3241 3119 328 321 0 0 chr12 80044170 80044282 -63742173 - MIR SINE MIR 0 262 151 21 0 0 0 chr12 80044302 80044323 -63742132 + AT_rich Low_complexity Low_complexity 1 21 0 356 343 48 33 chr12 80044414 80044669 -63741786 - L2 LINE L2 -256 3057 2676 321 313 58 98 chr12 80045450 80045567 -63740888 - MIR SINE MIR 0 262 157 2382 81 0 3 chr12 80045567 80045864 -63740591 - AluY SINE Alu -15 296 1 321 313 58 98 chr12 80045864 80045970 -63740485 - MIR SINE MIR -105 157 48 26 64 0 0 chr12 80046438 80046485 -63739970 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr12 80047199 80047247 -63739208 + AT_rich Low_complexity Low_complexity 1 48 0 315 292 193 13 chr12 80048508 80048676 -63737779 + MIR SINE MIR 2 199 -63 2348 311 136 18 chr12 80048721 80050125 -63736330 - L2 LINE L2 -49 3264 1686 482 252 8 8 chr12 80050263 80050382 -63736073 + MER70A LTR ERVL 41 159 -313 * 1711 254 5 0 chr12 80050381 80050759 -63735696 + MER70A LTR ERVL 90 469 -3 228 315 193 25 chr12 80051007 80051245 -63735210 + L2 LINE L2 1913 2190 -1124 572 237 66 0 chr12 80051478 80051630 -63734825 + MSTC LTR MaLR 1 162 -212 635 208 21 0 chr12 80051654 80051798 -63734657 + MSTC LTR MaLR 282 428 0 726 289 153 6 chr12 80051799 80052159 -63734296 + L2 LINE L2 2214 2626 -688 571 319 65 55 chr12 80052418 80052785 -63733670 + L2 LINE L2 2562 2932 -382 1471 206 88 26 chr12 80053287 80053754 -63732701 - LTR54B LTR ERV1 -2 496 1 216 260 51 163 chr12 80054113 80054178 -63732277 - MIR SINE MIR -36 226 155 1329 178 68 71 chr12 80054178 80054487 -63731968 - AluJo SINE Alu -4 308 1 216 260 51 163 chr12 80054487 80054617 -63731838 - MIR SINE MIR -107 155 53 235 331 60 46 chr12 80055766 80056047 -63730408 + L2 LINE L2 1978 2262 -1052 188 415 0 8 chr12 80056088 80056206 -63730249 + L2 LINE L2 2377 2493 -821 4072 91 7 0 chr12 80056355 80056927 -63729528 - L1PB1 LINE L1 0 6151 5576 3505 169 4 0 chr12 80056927 80057631 -63728824 + L1 LINE L1 4039 4745 -1401 346 179 0 64 chr12 80057632 80057710 -63728745 - MER20 DNA MER1_type -146 73 1 444 327 28 44 chr12 80058171 80058422 -63728033 + L1MEd LINE L1 938 1184 -4935 2552 215 46 34 chr12 80058518 80059416 -63727039 - LTR48-int LTR ERV1 -296 6035 3814 1049 199 54 112 chr12 80059420 80060178 -63726277 - LTR48-int LTR ERV1 -2206 4125 1562 795 162 104 31 chr12 80060449 80060704 -63725751 - LTR48-int LTR ERV1 -2750 2121 1220 850 148 0 68 chr12 80060782 80060958 -63725497 - L1PA13 LINE L1 -3 6160 5997 819 169 91 70 chr12 80061008 80061250 -63725205 - LTR8A LTR ERV1 -16 711 465 1891 152 29 61 chr12 80061253 80061629 -63724826 - THE1B LTR MaLR 0 364 1 7239 125 2 0 chr12 80061629 80062699 -63723756 - THE1B-int LTR MaLR 0 1580 509 913 213 11 62 chr12 80062699 80062971 -63723484 - LTR8A LTR ERV1 -434 293 36 374 228 53 63 chr12 80062993 80063182 -63723273 - MERVL LTR ERVL -4400 943 757 * 630 126 55 104 chr12 80063012 80063194 -63723261 - LTR48-int LTR ERV1 -3356 2975 2803 263 167 0 0 chr12 80063410 80063458 -63722997 + MER54B LTR ERVL 746 793 0 359 154 31 0 chr12 80063458 80063523 -63722932 - MER31A LTR ERV1 -400 85 19 1541 168 28 4 chr12 80063550 80063800 -63722655 + AluJb SINE Alu 49 304 -8 1178 192 19 35 chr12 80063856 80064169 -63722286 - LTR48-int LTR ERV1 -4329 607 300 327 111 37 0 chr12 80064205 80064259 -63722196 - LTR48-int LTR ERV1 -4669 1662 1607 370 184 11 0 chr12 80065063 80065150 -63721305 - LTR48-int LTR ERV1 -4954 1377 1290 1457 207 30 111 chr12 80065454 80066198 -63720257 - LTR48-int LTR ERV1 -4488 1458 362 522 237 72 93 chr12 80066484 80067034 -63719421 - LTR48-int LTR ERV1 -4488 2070 15 737 204 88 59 chr12 80067049 80067612 -63718843 - LTR48 LTR ERV1 0 787 1 653 305 54 8 chr12 80067964 80068223 -63718232 - LTR16C LTR ERVL -27 464 194 442 303 75 56 chr12 80068832 80069152 -63717303 - MERVL LTR ERVL -498 4987 4662 1952 89 3 8 chr12 80069319 80069673 -63716782 + LTR7 LTR ERV1 1 441 -9 2880 104 4 26 chr12 80069682 80070151 -63716304 + HERVH LTR ERV1 1 459 -7254 13633 107 11 18 chr12 80070209 80072419 -63714036 + HERVH LTR ERV1 800 2995 -4718 5292 116 6 3 chr12 80072398 80073250 -63713205 + HERVH LTR ERV1 3140 3993 -3720 * 2798 131 0 5 chr12 80073252 80073694 -63712761 + HERVH LTR ERV1 4488 4927 -2786 1527 97 0 0 chr12 80073805 80074032 -63712423 + HERVH LTR ERV1 3767 3993 -3720 4100 143 0 3 chr12 80074034 80074698 -63711757 + HERVH LTR ERV1 4488 5149 -2564 1171 167 19 0 chr12 80074699 80074915 -63711540 + HERVH LTR ERV1 5600 5819 -1894 2232 93 48 13 chr12 80074915 80075292 -63711163 + HERVH LTR ERV1 7324 7713 0 515 110 0 110 chr12 80075292 80075410 -63711045 + LTR7 LTR ERV1 1 105 -345 315 0 0 0 chr12 80078607 80078642 -63707813 + (TAA)n Simple_repeat Simple_repeat 3 37 0 22 0 0 0 chr12 80079100 80079122 -63707333 + AT_rich Low_complexity Low_complexity 1 22 0 203 286 22 11 chr12 80079942 80080033 -63706422 + GA-rich Low_complexity Low_complexity 5 96 0 200 35 35 0 chr12 80081293 80081322 -63705133 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 80081550 80081585 -63704870 + AT_rich Low_complexity Low_complexity 1 35 0 2439 50 3 0 chr12 80082693 80082991 -63703464 + AluY SINE Alu 13 311 0 772 215 20 7 chr12 80084327 80084476 -63701979 - MER58B DNA MER1_type -3 338 188 2431 135 6 3 chr12 80085118 80085481 -63700974 + THE1B LTR MaLR 1 364 0 9262 132 41 30 chr12 80085481 80087041 -63699414 + THE1B-int LTR MaLR 1 1578 -2 2113 132 70 3 chr12 80087043 80087384 -63699071 + THE1B LTR MaLR 1 364 0 2214 85 0 50 chr12 80087389 80087708 -63698747 - AluY SINE Alu -8 303 1 265 349 59 24 chr12 80087809 80087978 -63698477 - HERV16 LTR ERVL -4092 904 730 727 323 49 43 chr12 80088943 80088977 -63697478 - LTR16C LTR ERVL -9 482 450 2128 121 10 3 chr12 80088977 80089282 -63697173 + AluSp SINE Alu 1 307 -6 727 323 49 43 chr12 80089282 80089572 -63696883 - LTR16C LTR ERVL -41 450 156 330 259 108 32 chr12 80089770 80089928 -63696527 - MLT1J1 LTR MaLR -29 417 248 304 127 0 17 chr12 80089979 80090019 -63696436 - MLT2A1 LTR ERVL 0 444 405 261 0 0 0 chr12 80090019 80090048 -63696407 + (TA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr12 80090047 80090068 -63696387 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 304 127 0 17 chr12 80090048 80090084 -63696371 - MLT2A1 LTR ERVL -39 405 399 331 291 0 0 chr12 80090084 80090170 -63696285 + L1MC4 LINE L1 6617 6702 -1340 261 261 23 0 chr12 80090171 80090259 -63696196 - L1MC4 LINE L1 -1339 6703 6614 354 98 0 0 chr12 80090259 80090310 -63696145 + (TG)n Simple_repeat Simple_repeat 1 51 0 3109 82 12 2 chr12 80090310 80090714 -63695741 - MLT2A2 LTR ERVL -45 408 1 21 0 0 0 chr12 80091587 80091608 -63694847 + AT_rich Low_complexity Low_complexity 1 21 0 203 171 0 0 chr12 80091873 80091908 -63694547 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 228 35 0 0 chr12 80092348 80092377 -63694078 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 219 36 0 0 chr12 80093102 80093130 -63693325 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 204 273 242 40 chr12 80093536 80093635 -63692820 - L2 LINE L2 -13 3300 3182 1784 246 99 30 chr12 80094500 80095073 -63691382 - MLT1E2 LTR MaLR -10 616 4 221 200 109 18 chr12 80095654 80095709 -63690746 + L2 LINE L2 3201 3260 -12 781 282 59 31 chr12 80095845 80096100 -63690355 + MIR SINE MIR 1 262 0 681 66 0 0 chr12 80096329 80096420 -63690035 + (TG)n Simple_repeat Simple_repeat 2 92 0 373 280 45 8 chr12 80096465 80096597 -63689858 + MER69 DNA AcHobo 1 137 -1089 425 344 103 37 chr12 80096938 80097392 -63689063 + L2 LINE L2 2478 2961 -353 323 310 108 47 chr12 80098897 80099110 -63687345 - MIR SINE MIR 0 262 37 220 264 132 47 chr12 80099150 80099279 -63687176 - L3b LINE CR1 -166 1417 1278 30 27 0 0 chr12 80100101 80100138 -63686317 + AT_rich Low_complexity Low_complexity 1 37 0 323 293 78 9 chr12 80100604 80100720 -63685735 - L2 LINE L2 -23 3290 3167 758 260 39 27 chr12 80100939 80101197 -63685258 - MIR SINE MIR 0 262 2 684 269 92 24 chr12 80101368 80101730 -63684725 + MLT1G3 LTR MaLR 10 451 -116 22 0 0 0 chr12 80101757 80101779 -63684676 + AT_rich Low_complexity Low_complexity 1 22 0 2186 152 60 32 chr12 80101784 80102297 -63684158 - MLT2A2 LTR ERVL 0 554 2 246 193 0 0 chr12 80102302 80102358 -63684097 + MLT1G LTR MaLR 539 589 -1 257 304 54 0 chr12 80102850 80102962 -63683493 + MIR SINE MIR 125 242 -20 782 321 68 58 chr12 80103071 80103272 -63683183 + L2 LINE L2 2429 2627 -686 1643 207 52 18 chr12 80103272 80103716 -63682739 - MLT1C LTR MaLR -4 463 5 782 321 68 58 chr12 80103716 80104285 -63682170 + L2 LINE L2 2627 3202 -111 231 36 0 0 chr12 80104285 80104313 -63682142 + (CA)n Simple_repeat Simple_repeat 2 29 0 782 321 68 58 chr12 80104313 80104371 -63682084 + L2 LINE L2 3202 3258 -55 537 209 74 78 chr12 80104375 80104605 -63681850 + LTR37A LTR ERV1 119 347 -79 422 142 85 0 chr12 80104775 80104881 -63681574 - LTR37A LTR ERV1 0 426 312 235 353 35 24 chr12 80105273 80105443 -63681012 - L2 LINE L2 -520 2794 2623 416 301 135 6 chr12 80107105 80107268 -63679187 - MER5A DNA MER1_type 0 189 6 740 160 0 0 chr12 80107683 80107808 -63678647 - FLAM_A SINE Alu -5 137 13 1447 283 57 9 chr12 80108658 80109111 -63677344 + LTR26 LTR ERV1 1 475 -128 344 225 22 33 chr12 80109605 80109787 -63676668 + (TA)n Simple_repeat Simple_repeat 1 180 0 463 110 14 0 chr12 80110999 80111072 -63675383 + AluJ/FRAM SINE Alu 228 301 -11 301 109 0 0 chr12 80113940 80113986 -63672469 - L1PA8 LINE L1 -2 6170 6125 307 337 83 35 chr12 80114382 80114551 -63671904 + MER5B DNA MER1_type 1 177 -1 289 197 33 8 chr12 80114873 80114995 -63671460 + (TA)n Simple_repeat Simple_repeat 1 125 0 324 70 0 0 chr12 80115023 80115066 -63671389 + (CA)n Simple_repeat Simple_repeat 2 44 0 259 333 116 32 chr12 80117378 80117567 -63668888 + MIR SINE MIR 40 244 -18 23 33 0 0 chr12 80118022 80118052 -63668403 + AT_rich Low_complexity Low_complexity 1 30 0 196 301 14 14 chr12 80118679 80118752 -63667703 + L2 LINE L2 3191 3263 -9 21 0 0 0 chr12 80119034 80119055 -63667400 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 80119317 80119353 -63667102 + AT_rich Low_complexity Low_complexity 1 36 0 1758 167 17 13 chr12 80119633 80119932 -63666523 - AluJo SINE Alu -12 300 1 193 278 74 56 chr12 80119966 80120074 -63666381 + MIR SINE MIR 113 222 -40 26 30 0 0 chr12 80124693 80124726 -63661729 + AT_rich Low_complexity Low_complexity 1 33 0 3813 185 36 50 chr12 80125392 80126359 -63660096 + LTR13 LTR ERVK 1 954 0 343 248 31 23 chr12 80127666 80127795 -63658660 + GA-rich Low_complexity Low_complexity 5 134 0 200 35 35 0 chr12 80129051 80129080 -63657375 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 80129308 80129343 -63657112 + AT_rich Low_complexity Low_complexity 1 35 0 416 253 55 82 chr12 80130167 80130313 -63656142 + MIR3 SINE MIR 50 191 -17 240 385 69 47 chr12 80130485 80130802 -63655653 - L2 LINE L2 -62 3210 2887 1846 160 3 3 chr12 80130824 80131134 -63655321 + AluJb SINE Alu 1 310 0 264 346 167 39 chr12 80131235 80131828 -63654627 - L2 LINE L2 -565 2749 2081 23 68 0 0 chr12 80132614 80132658 -63653797 + AT_rich Low_complexity Low_complexity 1 44 0 32 67 0 0 chr12 80132828 80132888 -63653567 + AT_rich Low_complexity Low_complexity 1 60 0 33 80 0 0 chr12 80133444 80133519 -63652936 + AT_rich Low_complexity Low_complexity 1 75 0 22 0 0 0 chr12 80134022 80134044 -63652411 + AT_rich Low_complexity Low_complexity 1 22 0 11563 223 62 44 chr12 80135827 80137394 -63649061 - L1MB1 LINE L1 -178 5814 4278 901 130 0 29 chr12 80137394 80137532 -63648923 - AluJo SINE Alu -178 134 1 11563 223 62 44 chr12 80137532 80142176 -63644279 - L1MB1 LINE L1 -1714 4278 3 1273 234 39 21 chr12 80143988 80144325 -63642130 - MLT1A1 LTR MaLR 0 365 23 280 338 41 7 chr12 80145062 80145207 -63641248 + MIR3 SINE MIR 58 207 -1 23 0 0 0 chr12 80145348 80145371 -63641084 + AT_rich Low_complexity Low_complexity 1 23 0 722 46 0 0 chr12 80145449 80145536 -63640919 + L1PA3 LINE L1 2 88 -6058 42600 34 22 1 chr12 80145681 80151696 -63634759 + L1PA3 LINE L1 13 6151 -4 440 250 103 0 chr12 80152007 80152143 -63634312 + MIR SINE MIR 92 241 -21 31 92 0 0 chr12 80155089 80155176 -63631279 + AT_rich Low_complexity Low_complexity 1 87 0 794 252 73 28 chr12 80155648 80156059 -63630396 - MLT1C LTR MaLR 0 467 4 215 103 26 0 chr12 80156147 80156186 -63630269 + (TA)n Simple_repeat Simple_repeat 1 40 0 353 312 86 98 chr12 80157801 80158128 -63628327 + L2 LINE L2 2935 3257 -15 1127 214 30 30 chr12 80158246 80158512 -63627943 + AluJo SINE Alu 28 293 -19 246 400 61 0 chr12 80158955 80159070 -63627385 - MIR3 SINE MIR -21 187 66 257 315 76 0 chr12 80159875 80159967 -63626488 - MIR SINE MIR -49 213 115 180 311 219 25 chr12 80159939 80160047 -63626408 - MIR3 SINE MIR -65 143 9 * 856 231 39 0 chr12 80160047 80160229 -63626226 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 80160312 80160333 -63626122 + AT_rich Low_complexity Low_complexity 1 21 0 290 315 208 17 chr12 80160406 80160584 -63625871 + MIR SINE MIR 35 246 -16 211 377 86 38 chr12 80161230 80161755 -63624700 - L3 LINE CR1 -324 1253 704 207 191 0 0 chr12 80162910 80162952 -63623503 + A-rich Low_complexity Low_complexity 4 45 0 215 368 15 15 chr12 80163215 80163348 -63623107 + L3b LINE CR1 1219 1351 -232 21 0 0 0 chr12 80164201 80164222 -63622233 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 80165237 80165259 -63621196 + AT_rich Low_complexity Low_complexity 1 22 0 1117 139 4 101 chr12 80165664 80165902 -63620553 - AluJb SINE Alu -17 295 81 1380 218 66 17 chr12 80168223 80168571 -63617884 + MLT1A1 LTR MaLR 1 365 0 32 75 0 0 chr12 80169842 80169909 -63616546 + AT_rich Low_complexity Low_complexity 1 67 0 645 251 166 26 chr12 80170103 80170374 -63616081 + MLT1J1 LTR MaLR 3 311 -135 255 61 0 0 chr12 80171870 80171903 -63614552 + (TA)n Simple_repeat Simple_repeat 1 33 0 1996 178 69 10 chr12 80171973 80172377 -63614078 + MSTA LTR MaLR 1 428 0 257 246 0 0 chr12 80172623 80172684 -63613771 + L2 LINE L2 3244 3304 -9 443 279 17 90 chr12 80173464 80173697 -63612758 - MIR SINE MIR 0 262 47 455 296 56 55 chr12 80173863 80174227 -63612228 - L2 LINE L2 -174 3139 2773 497 286 16 0 chr12 80175630 80175756 -63610699 - L2 LINE L2 -522 2792 2665 1000 149 0 0 chr12 80176582 80176750 -63609705 + L1PA15 LINE L1 5996 6163 -2 315 324 21 0 chr12 80176866 80177011 -63609444 - L1ME LINE L1 -357 5764 5617 675 300 28 12 chr12 80177118 80177368 -63609087 - MIR SINE MIR -2 260 7 2044 249 63 55 chr12 80178460 80179495 -63606960 + L1MC5 LINE L1 6871 7913 -48 257 309 24 24 chr12 80179523 80179607 -63606848 + L2 LINE L2 3183 3266 -6 236 271 71 0 chr12 80179634 80179704 -63606751 + MIR SINE MIR 117 191 -71 473 290 50 15 chr12 80182001 80182201 -63604254 - HAL1b LINE L1 -458 890 684 311 271 172 59 chr12 80182222 80182425 -63604030 - HAL1b LINE L1 -878 470 245 2291 54 0 0 chr12 80182433 80182759 -63603696 - AluY SINE Alu 0 326 1 7273 153 30 16 chr12 80184276 80185552 -63600903 - Tigger1 DNA MER2_type -11 2407 1114 5501 169 21 23 chr12 80185553 80187484 -63598971 + L1PA16 LINE L1 4248 6166 0 21 0 0 0 chr12 80188363 80188384 -63598071 + AT_rich Low_complexity Low_complexity 1 21 0 323 325 48 0 chr12 80188384 80188510 -63597945 - L1MC4 LINE L1 -1297 6745 6614 2100 128 0 0 chr12 80188521 80188817 -63597638 - AluSx SINE Alu -16 296 1 557 295 72 21 chr12 80190347 80190584 -63595871 - MIR SINE MIR -1 261 13 23 0 0 0 chr12 80190588 80190611 -63595844 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 80190616 80190637 -63595818 + AT_rich Low_complexity Low_complexity 1 21 0 310 331 90 6 chr12 80190723 80190889 -63595566 + L1ME LINE L1 5521 5700 -421 4865 31 2 0 chr12 80190929 80191503 -63594952 - L1PA3 LINE L1 -4 6151 5577 24 0 0 0 chr12 80191676 80191700 -63594755 + AT_rich Low_complexity Low_complexity 1 24 0 998 90 8 0 chr12 80191700 80191834 -63594621 + AluSp SINE Alu 16 150 -163 6426 52 6 6 chr12 80191868 80192691 -63593764 + L1PA5 LINE L1 5332 6154 0 300 348 0 37 chr12 80192806 80192941 -63593514 + MIR SINE MIR 20 149 -113 1152 289 72 50 chr12 80192989 80193191 -63593264 + L1ME LINE L1 229 425 -5645 2336 96 0 6 chr12 80193191 80193504 -63592951 + AluSq SINE Alu 1 311 -2 1152 289 72 50 chr12 80193504 80194055 -63592400 + L1ME LINE L1 425 998 -5072 2891 274 97 30 chr12 80194059 80194925 -63591530 + L1ME LINE L1 1081 1888 -4192 2095 132 73 3 chr12 80194925 80195265 -63591190 + THE1B LTR MaLR 1 364 0 2891 274 97 30 chr12 80195265 80196701 -63589754 + L1ME LINE L1 1888 3496 -2584 1104 58 0 0 chr12 80196726 80196865 -63589590 + L1PA8 LINE L1 6033 6171 -1 382 215 39 39 chr12 80196874 80197004 -63589451 + L1M1 LINE L1 5353 5482 -820 2299 130 36 0 chr12 80197096 80197458 -63588997 + THE1C LTR MaLR 1 375 0 1108 273 66 18 chr12 80197519 80197956 -63588499 + L2 LINE L2 2624 3085 -228 26 0 0 0 chr12 80198313 80198339 -63588116 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 80198565 80198600 -63587855 + AT_rich Low_complexity Low_complexity 1 35 0 228 117 33 17 chr12 80198720 80198780 -63587675 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 26 0 0 0 chr12 80201001 80201027 -63585428 + AT_rich Low_complexity Low_complexity 1 26 0 3245 145 29 19 chr12 80201318 80201932 -63584523 + L1MA8 LINE L1 5671 6290 -1 1195 40 13 7 chr12 80202128 80202280 -63584175 + AluY SINE Alu 156 308 -3 2509 66 0 0 chr12 80204077 80204381 -63582074 - AluY SINE Alu -5 306 3 228 122 0 0 chr12 80204724 80204765 -63581690 + (ATG)n Simple_repeat Simple_repeat 2 42 0 239 339 62 0 chr12 80205347 80205412 -63581043 + L2 LINE L2 3141 3209 -63 194 0 39 0 chr12 80205433 80205459 -63580996 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2064 134 3 0 chr12 80205463 80205762 -63580693 + AluSq SINE Alu 1 300 -13 501 251 36 31 chr12 80206003 80206198 -63580257 + L1ME LINE L1 4426 4621 -1459 399 335 128 31 chr12 80206218 80206701 -63579754 + L1ME LINE L1 4671 5200 -880 259 308 100 20 chr12 80206786 80207158 -63579297 + L1ME LINE L1 5276 5684 -414 523 306 37 37 chr12 80207828 80208073 -63578382 + MIR SINE MIR 18 262 0 675 298 97 21 chr12 80208726 80208964 -63577491 + MIR SINE MIR 2 257 -5 21 36 0 0 chr12 80210120 80210148 -63576307 + AT_rich Low_complexity Low_complexity 1 28 0 234 269 241 0 chr12 80212309 80212417 -63574038 - MIR SINE MIR -126 136 3 359 343 62 0 chr12 80212562 80212708 -63573747 + MIR3 SINE MIR 42 196 -12 24 0 0 0 chr12 80213805 80213829 -63572626 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 80213980 80214001 -63572454 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 80214185 80214229 -63572226 + (TG)n Simple_repeat Simple_repeat 2 45 0 335 274 91 38 chr12 80214231 80214419 -63572036 + MIR SINE MIR 17 211 -51 269 278 35 70 chr12 80215325 80215440 -63571015 + MER91C DNA MER1_type 20 130 -10 2321 98 7 0 chr12 80215598 80215905 -63570550 - AluSx SINE Alu -3 309 1 405 353 147 13 chr12 80216837 80217069 -63569386 + L3b LINE CR1 1257 1519 -64 27 29 0 0 chr12 80219860 80219894 -63566561 + AT_rich Low_complexity Low_complexity 1 34 0 2409 54 3 0 chr12 80221249 80221547 -63564908 + AluY SINE Alu 13 311 0 1550 191 0 19 chr12 80225349 80225658 -63560797 - AluJb SINE Alu -4 308 6 270 272 37 0 chr12 80226195 80226276 -63560179 - L2 LINE L2 -1 3271 3188 723 289 38 17 chr12 80226749 80226984 -63559471 + MIR SINE MIR 6 245 -17 317 269 67 0 chr12 80227123 80227227 -63559228 - MIR SINE MIR -41 221 111 484 356 66 70 chr12 80227698 80228139 -63558316 + L2 LINE L2 2807 3245 -27 262 45 45 0 chr12 80228140 80228184 -63558271 + (TC)n Simple_repeat Simple_repeat 1 46 0 195 42 0 0 chr12 80228219 80228243 -63558212 + (TG)n Simple_repeat Simple_repeat 1 24 0 243 330 135 22 chr12 80228882 80229067 -63557388 - MLT1L LTR MaLR -208 407 202 482 179 34 26 chr12 80229820 80229937 -63556518 + LTR67 LTR ERVL 432 549 -8 21 36 0 0 chr12 80230656 80230684 -63555771 + AT_rich Low_complexity Low_complexity 1 28 0 515 326 33 0 chr12 80231756 80231937 -63554518 + MIR SINE MIR 73 259 -3 2100 131 3 0 chr12 80232050 80232362 -63554093 + AluSq SINE Alu 1 313 0 237 159 0 0 chr12 80232366 80232410 -63554045 + GA-rich Low_complexity Low_complexity 3 46 0 984 331 203 15 chr12 80232766 80233760 -63552695 + L2 LINE L2 976 2156 -1158 687 316 92 48 chr12 80233760 80234602 -63551853 + L2 LINE L2 2445 3313 0 206 232 0 0 chr12 80235739 80235795 -63550660 + A-rich Low_complexity Low_complexity 2 57 0 334 313 18 18 chr12 80240731 80240843 -63545612 - MIR3 SINE MIR -1 207 96 22 56 0 0 chr12 80241255 80241291 -63545164 + AT_rich Low_complexity Low_complexity 1 36 0 218 211 0 0 chr12 80241401 80241439 -63545016 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 222 246 0 0 chr12 80241597 80241658 -63544797 + GA-rich Low_complexity Low_complexity 4 64 0 315 0 0 0 chr12 80242364 80242399 -63544056 + (TAA)n Simple_repeat Simple_repeat 3 37 0 22 0 0 0 chr12 80242857 80242879 -63543576 + AT_rich Low_complexity Low_complexity 1 22 0 729 321 27 1 chr12 80244356 80244602 -63541853 + MIR SINE MIR 9 257 -5 225 238 119 36 chr12 80247709 80247793 -63538662 + L2 LINE L2 3222 3312 -1 415 254 91 0 chr12 80248322 80248432 -63538023 + L2 LINE L2 3192 3311 -2 1537 139 88 86 chr12 80248572 80248946 -63537509 - THE1C LTR MaLR 0 375 1 318 370 14 14 chr12 80249033 80249171 -63537284 - MIR SINE MIR -108 154 17 875 284 132 14 chr12 80249556 80249911 -63536544 + LTR16B LTR ERVL 65 461 -3 217 238 48 0 chr12 80250598 80250661 -63535794 + GA-rich Low_complexity Low_complexity 3 68 0 185 333 58 0 chr12 80250684 80250753 -63535702 + L2 LINE L2 2408 2480 -834 210 261 72 45 chr12 80251002 80251113 -63535342 + MIR SINE MIR 146 259 -3 192 77 0 0 chr12 80251462 80251488 -63534967 + (TAA)n Simple_repeat Simple_repeat 1 26 0 220 292 21 31 chr12 80251496 80251592 -63534863 + MIR SINE MIR 168 262 0 1416 277 124 98 chr12 80252377 80252724 -63533731 + L1ME LINE L1 3060 3396 -2750 2104 120 0 7 chr12 80252724 80253023 -63533432 + AluSc SINE Alu 1 297 -12 1416 277 124 98 chr12 80253023 80254859 -63531596 + L1ME LINE L1 3396 5300 -846 493 300 28 18 chr12 80254869 80255152 -63531303 + L1ME LINE L1 5290 5575 -595 1101 294 45 8 chr12 80255189 80255546 -63530909 - L2 LINE L2 0 3313 2944 1094 314 126 32 chr12 80255639 80256452 -63530003 - L2 LINE L2 -1152 2162 1274 22 0 0 0 chr12 80257114 80257136 -63529319 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr12 80257211 80257260 -63529195 + AT_rich Low_complexity Low_complexity 1 49 0 1775 100 108 0 chr12 80257418 80257677 -63528778 + AluSg SINE Alu 7 293 -17 252 322 40 47 chr12 80260093 80260242 -63526213 + L3b LINE CR1 1176 1323 -260 204 40 0 0 chr12 80260538 80260563 -63525892 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 332 22 22 0 chr12 80260562 80260607 -63525848 + (CA)n Simple_repeat Simple_repeat 1 46 0 689 203 118 57 chr12 80263979 80264225 -63522230 + MIR SINE MIR 2 262 0 229 343 0 37 chr12 80265126 80265234 -63521221 + MIR SINE MIR 23 126 -136 42111 36 22 2 chr12 80265541 80271558 -63514897 + L1PA3 LINE L1 13 6151 -4 739 319 54 43 chr12 80271625 80272386 -63514069 - L1MEd LINE L1 -5052 1067 299 263 148 37 25 chr12 80273530 80273611 -63512844 + (TA)n Simple_repeat Simple_repeat 2 83 0 277 65 59 71 chr12 80273614 80273784 -63512671 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 36 0 0 0 chr12 80273786 80273822 -63512633 + AT_rich Low_complexity Low_complexity 1 36 0 811 304 62 20 chr12 80275046 80275398 -63511057 - L3b LINE CR1 -114 1469 1103 266 246 167 32 chr12 80275640 80275766 -63510689 + MIR SINE MIR 51 193 -69 837 299 75 88 chr12 80276365 80277099 -63509356 - L2 LINE L2 -5 3308 2575 2134 105 130 28 chr12 80277099 80277461 -63508994 - MSTA LTR MaLR 0 428 30 8283 175 74 3 chr12 80277461 80278979 -63507476 - MSTA-int LTR MaLR -25 1626 1 2032 137 132 5 chr12 80278979 80279358 -63507097 - MSTA LTR MaLR 0 428 2 209 224 343 8 chr12 80279359 80279493 -63506962 - L2 LINE L2 -735 2579 2401 540 329 34 17 chr12 80279540 80279777 -63506678 + MIR SINE MIR 14 254 -8 1424 212 0 46 chr12 80279850 80280183 -63506272 - AluJo SINE Alu 0 312 1 299 324 0 0 chr12 80280652 80280760 -63505695 - L3 LINE CR1 -817 760 653 189 297 63 36 chr12 80281487 80281598 -63504857 + L2 LINE L2 2672 2785 -529 2243 99 7 0 chr12 80281600 80281894 -63504561 + AluSg SINE Alu 3 298 -12 246 322 0 35 chr12 80282733 80282820 -63503635 + L2 LINE L2 3186 3269 -3 447 305 0 60 chr12 80282862 80283062 -63503393 + MIR SINE MIR 75 262 0 4427 260 141 11 chr12 80283466 80285373 -63501082 + L1M4 LINE L1 2568 4722 -1424 2127 119 3 0 chr12 80285509 80285804 -63500651 + AluSx SINE Alu 1 296 -16 299 44 22 0 chr12 80287192 80287237 -63499218 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr12 80288873 80288895 -63497560 + AT_rich Low_complexity Low_complexity 1 22 0 2138 116 49 14 chr12 80289578 80289923 -63496532 + THE1B LTR MaLR 8 364 0 299 356 84 71 chr12 80290454 80290777 -63495678 - L2 LINE L2 0 3272 2946 234 0 0 0 chr12 80291112 80291138 -63495317 + (A)n Simple_repeat Simple_repeat 1 26 0 398 218 2 2 chr12 80291996 80292082 -63494373 + MIR SINE MIR 66 152 -56 446 391 46 23 chr12 80292100 80292494 -63493961 - L2 LINE L2 -4 3268 2866 203 423 66 0 chr12 80293097 80293234 -63493221 - L2 LINE L2 -8 3264 3119 23 33 0 0 chr12 80294148 80294178 -63492277 + AT_rich Low_complexity Low_complexity 1 30 0 4038 203 47 22 chr12 80295085 80295572 -63490883 - L1MA9 LINE L1 -38 7295 6822 207 0 0 0 chr12 80295572 80295595 -63490860 + (TG)n Simple_repeat Simple_repeat 2 24 0 4038 203 47 22 chr12 80295595 80296867 -63489588 - L1MA9 LINE L1 -511 6822 5497 * 7374 252 46 25 chr12 80296854 80301419 -63485036 - L1MA9 LINE L1 -2809 4358 10 220 368 75 19 chr12 80301632 80301738 -63484717 - L2 LINE L2 -21 3251 3140 25 31 0 0 chr12 80302211 80302243 -63484212 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr12 80302271 80302294 -63484161 + AT_rich Low_complexity Low_complexity 1 23 0 198 234 0 43 chr12 80302831 80302878 -63483577 - MIR SINE MIR -169 93 49 185 292 138 0 chr12 80304694 80304759 -63481696 + MIR SINE MIR 187 260 -2 6702 18 0 0 chr12 80305768 80306535 -63479920 + L1PA3 LINE L1 5386 6152 -3 30 93 0 0 chr12 80306535 80306621 -63479834 + AT_rich Low_complexity Low_complexity 1 86 0 192 40 0 0 chr12 80307252 80307277 -63479178 + (T)n Simple_repeat Simple_repeat 1 25 0 182 364 45 0 chr12 80309089 80309155 -63477300 - MIR3 SINE MIR -52 156 88 1990 131 0 0 chr12 80310004 80310295 -63476160 + AluSx SINE Alu 22 312 0 2711 206 32 22 chr12 80311513 80312111 -63474344 + L1MA10 LINE L1 5731 6334 0 230 245 9 47 chr12 80312110 80312216 -63474239 + L1MC4 LINE L1 6616 6717 -1325 * 23 0 0 0 chr12 80312693 80312716 -63473739 + AT_rich Low_complexity Low_complexity 1 23 0 871 288 68 38 chr12 80313373 80313738 -63472717 + L3 LINE CR1 1201 1576 -1 654 292 116 71 chr12 80313901 80314387 -63472068 - L2 LINE L2 -34 3279 2774 26 0 0 0 chr12 80314497 80314523 -63471932 + AT_rich Low_complexity Low_complexity 1 26 0 2320 89 3 6 chr12 80315022 80315335 -63471120 + AluSx SINE Alu 1 312 0 602 275 18 18 chr12 80317010 80317177 -63469278 + MIR3 SINE MIR 42 208 0 329 234 16 0 chr12 80317583 80317647 -63468808 - MIR SINE MIR -180 82 18 377 296 61 47 chr12 80317647 80317954 -63468501 + L1ME3A LINE L1 5591 5897 -273 2324 89 0 0 chr12 80318365 80318668 -63467787 - AluSg SINE Alu -7 303 1 1880 31 0 0 chr12 80318893 80319117 -63467338 + L1PA4 LINE L1 5929 6152 -3 656 299 123 43 chr12 80319158 80319596 -63466859 - L2 LINE L2 0 3313 2841 1671 229 71 25 chr12 80320497 80320977 -63465478 + L1ME1 LINE L1 5660 6161 -5 21 0 0 0 chr12 80321055 80321076 -63465379 + AT_rich Low_complexity Low_complexity 1 21 0 356 89 89 0 chr12 80321664 80321720 -63464735 + MLT1A1 LTR MaLR 1 61 -367 832 246 43 0 chr12 80321753 80321940 -63464515 + MLT1A1 LTR MaLR 171 365 0 180 357 82 20 chr12 80323549 80323647 -63462808 + L2 LINE L2 3169 3272 0 530 247 91 7 chr12 80324160 80324314 -63462141 + MIR SINE MIR 96 262 0 413 280 48 37 chr12 80325621 80325810 -63460645 - L2 LINE L2 -1 3312 3122 605 267 0 51 chr12 80325890 80325986 -63460469 + MIR SINE MIR 95 180 -82 1413 224 54 58 chr12 80325986 80326286 -63460169 + LTR40b LTR ERVL 1 300 -162 1756 170 17 0 chr12 80326286 80326580 -63459875 + AluJo SINE Alu 1 299 -13 1413 224 54 58 chr12 80326580 80326743 -63459712 + LTR40b LTR ERVL 300 462 0 605 267 0 51 chr12 80326743 80326822 -63459633 + MIR SINE MIR 180 261 -1 1420 200 124 62 chr12 80326827 80327278 -63459177 + MLT1D LTR MaLR 27 505 0 218 227 0 0 chr12 80327279 80327323 -63459132 + (TTA)n Simple_repeat Simple_repeat 2 45 0 206 391 130 10 chr12 80327327 80327519 -63458936 - L2 LINE L2 -189 3083 2869 511 308 85 31 chr12 80327529 80327847 -63458608 - L2 LINE L2 -955 2359 2025 441 0 0 0 chr12 80330026 80330075 -63456380 + (TG)n Simple_repeat Simple_repeat 2 50 0 340 229 33 26 chr12 80330078 80330231 -63456224 + (TA)n Simple_repeat Simple_repeat 1 154 0 21 0 0 0 chr12 80330795 80330816 -63455639 + AT_rich Low_complexity Low_complexity 1 21 0 551 305 149 0 chr12 80331376 80331530 -63454925 + MER5A DNA MER1_type 11 187 -2 241 266 26 35 chr12 80331570 80331683 -63454772 + Charlie7 DNA MER1_type 36 147 -2465 310 255 225 30 chr12 80331817 80332115 -63454340 + Charlie7 DNA MER1_type 329 684 -1928 513 187 11 0 chr12 80332223 80332314 -63454141 + L1MA8 LINE L1 1000 1091 -5772 * 5081 181 12 0 chr12 80332311 80333200 -63453255 - MSTA-int LTR MaLR -747 904 5 2405 165 39 0 chr12 80333204 80333616 -63452839 - MSTA LTR MaLR 0 428 1 6065 177 33 21 chr12 80333617 80334092 -63452363 + L1MA8 LINE L1 4720 5188 -1819 1915 155 0 0 chr12 80334092 80334388 -63452067 + AluSx SINE Alu 17 312 0 6065 177 33 21 chr12 80334388 80334603 -63451852 + L1MA8 LINE L1 5188 5399 -1608 207 0 0 0 chr12 80334603 80334626 -63451829 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6065 177 33 21 chr12 80334626 80335571 -63450884 + L1MA8 LINE L1 5399 6376 -631 1238 103 159 26 chr12 80335561 80335794 -63450661 + L1MA8 LINE L1 6734 6997 -10 * 304 248 159 18 chr12 80335817 80335930 -63450525 - MER5B DNA MER1_type -49 129 1 541 105 81 0 chr12 80336030 80336116 -63450339 - L1MA8 LINE L1 -181 6110 6018 21 36 0 0 chr12 80337361 80337389 -63449066 + AT_rich Low_complexity Low_complexity 1 28 0 723 237 0 24 chr12 80337849 80338018 -63448437 - MER91B DNA MER1_type -1 189 25 262 270 149 54 chr12 80338185 80338333 -63448122 + L3b LINE CR1 1266 1427 -156 698 273 6 17 chr12 80338348 80338520 -63447935 + MER5B DNA MER1_type 4 173 -5 313 255 27 6 chr12 80338577 80338692 -63447763 - MER5A DNA MER1_type -2 187 1 238 271 34 0 chr12 80338708 80338767 -63447688 + MER5A DNA MER1_type 9 69 -120 8947 44 0 6 chr12 80338772 80339900 -63446555 - L1P LINE L1 -3089 3057 1937 1255 45 0 0 chr12 80339900 80340056 -63446399 + L1PA5 LINE L1 5999 6154 0 301 192 303 0 chr12 80340056 80340155 -63446300 + MER5A DNA MER1_type 61 189 0 735 263 68 92 chr12 80340171 80340509 -63445946 - MER102b DNA MER1_type -11 330 1 375 360 83 33 chr12 80342832 80342976 -63443479 - L2 LINE L2 -189 3083 2948 351 0 0 0 chr12 80342976 80343015 -63443440 + (CA)n Simple_repeat Simple_repeat 2 40 0 375 360 83 33 chr12 80343015 80343233 -63443222 - L2 LINE L2 -324 2948 2702 324 292 142 41 chr12 80343573 80343840 -63442615 - L2 LINE L2 -1225 2089 1796 542 289 121 11 chr12 80345462 80345652 -63440803 + MIR SINE MIR 3 213 -49 8896 154 51 33 chr12 80345802 80348554 -63437901 + L1MA8 LINE L1 3477 6289 -2 558 301 31 48 chr12 80348925 80349154 -63437301 - MIR SINE MIR -1 261 37 604 260 57 31 chr12 80350975 80351202 -63435253 + Charlie8 DNA MER1_type 42 274 -2143 1640 251 49 24 chr12 80351670 80351798 -63434657 + L1MB8 LINE L1 14 137 -6722 2157 117 0 13 chr12 80351798 80352105 -63434350 - AluSx SINE Alu -9 303 1 1640 251 49 24 chr12 80352105 80352442 -63434013 + L1MB8 LINE L1 137 491 -6368 410 229 53 46 chr12 80352462 80352593 -63433862 - L1M4b LINE L1 -6714 145 14 694 275 0 0 chr12 80352636 80352774 -63433681 + L1MB8 LINE L1 482 619 -6240 428 160 13 0 chr12 80352768 80352843 -63433612 + L1MB8 LINE L1 928 1003 -5856 * 2022 247 90 3 chr12 80352831 80353475 -63432980 + L1MB8 LINE L1 4356 5055 -1902 3398 77 13 0 chr12 80353589 80354041 -63432414 + LTR22A LTR ERVK 1 458 0 1918 256 50 25 chr12 80355036 80355713 -63430742 + L1MB8 LINE L1 5046 5739 -1218 232 133 0 0 chr12 80355717 80355762 -63430693 + LTR66 LTR ERVL 394 438 -172 228 139 0 0 chr12 80355763 80355806 -63430649 + LTR66 LTR ERVL 394 436 -174 357 159 0 0 chr12 80355814 80355877 -63430578 + (TA)n Simple_repeat Simple_repeat 2 64 0 237 130 0 0 chr12 80355877 80355923 -63430532 - LTR66 LTR ERVL -171 439 394 188 182 23 0 chr12 80355933 80355977 -63430478 + (TA)n Simple_repeat Simple_repeat 2 46 0 3531 190 66 41 chr12 80355982 80356834 -63429621 + L1MB8 LINE L1 5741 6570 -419 315 0 0 0 chr12 80356834 80356869 -63429586 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2765 81 0 0 chr12 80356869 80357229 -63429226 - L1PA5 LINE L1 -18 6136 5777 3531 190 66 41 chr12 80357229 80357583 -63428872 + L1MB8 LINE L1 6569 6964 -25 226 218 39 26 chr12 80357783 80357861 -63428594 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 230 325 103 26 chr12 80358199 80358316 -63428139 + MER5A DNA MER1_type 38 167 -15 * 497 273 67 40 chr12 80358307 80358560 -63427895 - L3 LINE CR1 -8 1569 1310 235 171 0 24 chr12 80359000 80359041 -63427414 + MER58B DNA MER1_type 1 40 -301 * 558 158 84 0 chr12 80359038 80359133 -63427322 + MER58B DNA MER1_type 197 299 -42 372 286 8 67 chr12 80359452 80359571 -63426884 + L2 LINE L2 3193 3304 -9 681 281 10 5 chr12 80359575 80359778 -63426677 + MIR SINE MIR 59 262 0 201 156 0 0 chr12 80360333 80360365 -63426090 + (TTG)n Simple_repeat Simple_repeat 2 33 0 225 94 0 0 chr12 80360423 80360455 -63426000 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 823 199 0 30 chr12 80361603 80361769 -63424686 - MLT1D LTR MaLR -2 503 343 * 1258 229 57 29 chr12 80361754 80362138 -63424317 + MLT1C LTR MaLR 35 429 -38 299 220 0 0 chr12 80362183 80362233 -63424222 + MLT1C LTR MaLR 418 467 0 689 199 51 132 chr12 80362233 80362629 -63423826 - MLT1D LTR MaLR -162 343 1 233 364 0 0 chr12 80362645 80362722 -63423733 + MER5A DNA MER1_type 7 83 -106 673 175 66 0 chr12 80362863 80363000 -63423455 - Tigger5 DNA MER2_type -1 2322 2177 398 250 0 0 chr12 80362981 80363057 -63423398 - Tigger5 DNA MER2_type -2244 79 4 * 530 188 9 18 chr12 80363185 80363297 -63423158 - MSTD LTR MaLR -2 394 284 558 224 84 14 chr12 80363348 80363491 -63422964 - MSTD LTR MaLR -243 153 1 23 0 0 0 chr12 80364069 80364092 -63422363 + AT_rich Low_complexity Low_complexity 1 23 0 1071 254 122 100 chr12 80364510 80364978 -63421477 + MLT1G LTR MaLR 1 478 -117 736 65 0 0 chr12 80365145 80365238 -63421217 + AluY SINE Alu 203 295 -16 2163 167 67 2 chr12 80366488 80366890 -63419565 + MSTA LTR MaLR 1 428 0 299 306 93 0 chr12 80367431 80367539 -63418916 + MIR SINE MIR 107 224 -38 22 0 0 0 chr12 80368191 80368213 -63418242 + AT_rich Low_complexity Low_complexity 1 22 0 5503 159 24 16 chr12 80368987 80370963 -63415492 + L1MA4 LINE L1 4295 6289 -11 286 337 24 77 chr12 80371229 80371398 -63415057 + MIR SINE MIR 48 207 -55 253 315 92 31 chr12 80371519 80371649 -63414806 - L3b LINE CR1 -125 1458 1321 206 382 106 0 chr12 80372216 80372386 -63414069 - MIR SINE MIR -26 236 49 855 178 137 19 chr12 80372616 80372886 -63413569 - MER33 DNA MER1_type -14 310 9 21 57 0 0 chr12 80373074 80373109 -63413346 + AT_rich Low_complexity Low_complexity 1 35 0 1202 293 93 27 chr12 80373371 80374990 -63411465 - L1ME3A LINE L1 -219 5934 4038 2424 55 0 35 chr12 80374990 80375301 -63411154 - AluY SINE Alu -11 300 1 1202 293 93 27 chr12 80375301 80376280 -63410175 - L1ME3A LINE L1 -2115 4038 3125 506 323 19 0 chr12 80376509 80376670 -63409785 - MLT1I LTR MaLR -18 391 228 533 304 78 48 chr12 80376874 80377851 -63408604 - L1MEd LINE L1 -4723 1587 552 1168 198 91 60 chr12 80377906 80378290 -63408165 + MSTD LTR MaLR 1 396 0 217 286 24 12 chr12 80381082 80381166 -63405289 + MIR SINE MIR 178 262 0 419 267 78 9 chr12 80381296 80381412 -63405043 - MIR SINE MIR -100 162 39 2311 127 11 30 chr12 80381412 80381739 -63404716 + THE1B LTR MaLR 1 322 -42 1725 135 3 85 chr12 80381739 80382081 -63404374 - AluSx SINE Alu 0 312 1 2311 127 11 30 chr12 80382081 80382124 -63404331 + THE1B LTR MaLR 322 364 0 556 256 44 12 chr12 80382658 80382818 -63403637 + MIR SINE MIR 87 251 -11 185 233 47 0 chr12 80382785 80382828 -63403627 + L2 LINE L2 3223 3267 -5 * 235 335 150 30 chr12 80382923 80383090 -63403365 + L2 LINE L2 3001 3187 -85 2087 155 31 72 chr12 80383528 80383820 -63402635 + MLT1C LTR MaLR 38 307 -160 1518 103 40 14 chr12 80383820 80384043 -63402412 - MER30 DNA MER1_type 0 230 2 2087 155 31 72 chr12 80384043 80384196 -63402259 + MLT1C LTR MaLR 307 465 -2 778 281 78 0 chr12 80384738 80384955 -63401500 + MIR SINE MIR 29 262 0 27 0 0 0 chr12 80385211 80385238 -63401217 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 80385930 80385951 -63400504 + AT_rich Low_complexity Low_complexity 1 21 0 365 242 74 21 chr12 80386178 80386273 -63400182 - MIR SINE MIR -63 145 46 29 0 0 0 chr12 80386578 80386607 -63399848 + AT_rich Low_complexity Low_complexity 1 29 0 1957 146 49 18 chr12 80386798 80387127 -63399328 - MER1B DNA MER1_type 0 339 1 3723 310 118 38 chr12 80387448 80387635 -63398820 - L2 LINE L2 0 3313 3143 5038 19 0 0 chr12 80387635 80388211 -63398244 + L1PA3 LINE L1 5580 6155 0 3723 310 118 38 chr12 80388211 80389267 -63397188 - L2 LINE L2 -170 3143 2174 2176 111 0 0 chr12 80389267 80389582 -63396873 - AluSc SINE Alu 0 315 1 3723 310 118 38 chr12 80389582 80390811 -63395644 - L2 LINE L2 -1139 2174 647 1543 124 67 18 chr12 80390842 80391125 -63395330 + L1MA8 LINE L1 5990 6286 -5 678 323 74 38 chr12 80391165 80391611 -63394844 - L2 LINE L2 -2716 598 137 881 250 62 5 chr12 80393319 80393527 -63392928 + MER58A DNA MER1_type 1 220 -4 1102 242 26 62 chr12 80393808 80394196 -63392259 - MLT1A2 LTR MaLR 0 374 1 32 26 0 0 chr12 80394951 80394990 -63391465 + AT_rich Low_complexity Low_complexity 1 39 0 1157 249 96 46 chr12 80396041 80396258 -63390197 + L2 LINE L2 2504 2709 -604 1594 201 53 8 chr12 80396258 80396616 -63389839 + MLT1A2 LTR MaLR 1 374 0 1157 249 96 46 chr12 80396616 80397103 -63389352 + L2 LINE L2 2709 3305 -8 3127 265 91 66 chr12 80397534 80398072 -63388383 - L2 LINE L2 -2 3311 2788 2302 119 30 25 chr12 80398072 80398434 -63388021 - THE1B LTR MaLR 0 364 1 3127 265 91 66 chr12 80398434 80399689 -63386766 - L2 LINE L2 -525 2788 1480 183 129 0 0 chr12 80401216 80401247 -63385208 + (CAT)n Simple_repeat Simple_repeat 2 32 0 525 282 46 75 chr12 80402201 80402369 -63384086 + MIR SINE MIR 29 189 -73 2262 118 0 0 chr12 80402369 80402675 -63383780 + AluSx SINE Alu 1 306 -6 525 282 46 75 chr12 80402675 80402747 -63383708 + MIR SINE MIR 189 262 0 2269 276 66 68 chr12 80403669 80404350 -63382105 + L2 LINE L2 1788 2469 -844 2756 3 0 3 chr12 80404350 80404650 -63381805 + AluYa5 SINE Alu 1 299 -12 2269 276 66 68 chr12 80404650 80404800 -63381655 + L2 LINE L2 2469 2618 -695 1033 187 22 49 chr12 80404800 80405025 -63381430 - MER20 DNA MER1_type 0 219 1 2269 276 66 68 chr12 80405025 80405201 -63381254 + L2 LINE L2 2618 2793 -520 1040 62 7 0 chr12 80405201 80405346 -63381109 + (GGAA)n Simple_repeat Simple_repeat 4 149 0 2269 276 66 68 chr12 80405346 80405861 -63380594 + L2 LINE L2 2793 3309 -4 294 266 115 37 chr12 80407480 80407624 -63378831 + MIR SINE MIR 35 189 -65 21 0 0 0 chr12 80408052 80408073 -63378382 + AT_rich Low_complexity Low_complexity 1 21 0 594 247 47 29 chr12 80408935 80409105 -63377350 + MIR3 SINE MIR 15 187 -21 24 32 0 0 chr12 80409293 80409324 -63377131 + AT_rich Low_complexity Low_complexity 1 31 0 960 288 32 74 chr12 80409676 80410149 -63376306 - LTR16A1 LTR ERVL 0 457 5 346 267 12 0 chr12 80410175 80410261 -63376194 - L2 LINE L2 0 3313 3227 284 349 26 104 chr12 80410695 80410887 -63375568 - L2 LINE L2 -1 3271 3095 3390 285 92 29 chr12 80411449 80412275 -63374180 + L2 LINE L2 1485 2257 -1056 369 0 0 0 chr12 80412275 80412316 -63374139 + (CA)n Simple_repeat Simple_repeat 1 41 0 3390 285 92 29 chr12 80412316 80413114 -63373341 + L2 LINE L2 2257 3230 -83 11064 24 2 0 chr12 80413144 80415216 -63371239 + L1PA3 LINE L1 4079 6153 -2 208 343 49 29 chr12 80415378 80415480 -63370975 - L2 LINE L2 -231 3041 2938 2024 135 0 7 chr12 80415564 80415861 -63370594 + AluSx SINE Alu 1 295 -17 564 354 39 36 chr12 80416023 80416354 -63370101 - L2 LINE L2 -440 2874 2543 357 314 96 0 chr12 80417576 80417732 -63368723 + MER117 DNA MER1_type 1 171 -26 414 299 22 22 chr12 80417889 80418023 -63368432 - L2 LINE L2 0 3313 3180 1596 205 62 58 chr12 80420360 80420863 -63365592 + MLT1D LTR MaLR 1 505 0 359 285 93 29 chr12 80421125 80421297 -63365158 + MER5A DNA MER1_type 7 189 0 687 273 190 32 chr12 80422021 80422332 -63364123 - L2 LINE L2 -1 3312 2953 8697 32 4 0 chr12 80422402 80423447 -63363008 - L1PA3 LINE L1 -1568 4578 3530 7589 31 0 0 chr12 80423447 80425045 -63361410 + L1PA3 LINE L1 4556 6152 -3 23 0 0 0 chr12 80425045 80425068 -63361387 + AT_rich Low_complexity Low_complexity 1 23 0 2066 82 21 0 chr12 80425491 80425770 -63360685 + L1PA10 LINE L1 5866 6150 -18 21 57 0 0 chr12 80425897 80425932 -63360523 + AT_rich Low_complexity Low_complexity 1 35 0 834 254 72 50 chr12 80425958 80426598 -63359857 - L1ME LINE L1 -590 5572 4903 328 341 85 17 chr12 80426896 80427189 -63359266 - L1ME LINE L1 -1590 4556 4244 338 313 90 8 chr12 80427208 80427498 -63358957 - L1ME LINE L1 -2013 4133 3810 316 286 117 45 chr12 80427695 80427987 -63358468 - L1ME LINE L1 -2719 3427 3158 2429 131 40 26 chr12 80427987 80428415 -63358040 - Tigger2a DNA MER2_type 0 434 1 316 286 117 45 chr12 80428415 80428703 -63357752 - L1ME LINE L1 -2988 3158 2805 370 262 49 43 chr12 80428762 80428926 -63357529 - L1MA9 LINE L1 -38 6274 6110 * 1809 189 32 19 chr12 80428921 80429297 -63357158 + L1MA9 LINE L1 5676 6056 -256 745 154 0 7 chr12 80429367 80429503 -63356952 - L1 LINE L1 -1449 4697 4563 481 283 69 26 chr12 80429835 80430068 -63356387 + L2 LINE L2 2457 2699 -615 5772 117 16 0 chr12 80430068 80431180 -63355275 - L1PA14 LINE L1 0 6161 5025 255 312 13 0 chr12 80431543 80431620 -63354835 + L2 LINE L2 3236 3313 0 201 286 143 45 chr12 80431682 80431815 -63354640 + L2 LINE L2 3124 3269 -44 198 103 0 0 chr12 80431815 80431844 -63354611 + (CA)n Simple_repeat Simple_repeat 2 30 0 212 212 59 0 chr12 80431853 80431938 -63354517 + (TA)n Simple_repeat Simple_repeat 2 91 0 47 19 0 0 chr12 80431938 80431992 -63354463 + AT_rich Low_complexity Low_complexity 1 54 0 365 232 49 12 chr12 80432095 80432177 -63354278 - L2 LINE L2 -18 3295 3211 493 351 48 22 chr12 80432644 80433106 -63353349 - L1ME2 LINE L1 -301 5863 5390 26 0 0 0 chr12 80433647 80433673 -63352782 + AT_rich Low_complexity Low_complexity 1 26 0 335 317 237 24 chr12 80434860 80435232 -63351223 - L2 LINE L2 -353 2961 2511 401 259 156 22 chr12 80436216 80436351 -63350104 + MIR SINE MIR 2 154 -108 364 337 84 27 chr12 80436896 80437048 -63349407 - MIR3 SINE MIR -63 145 10 846 80 35 146 chr12 80438540 80438739 -63347716 + L1MA8 LINE L1 6109 6285 -6 1002 237 48 85 chr12 80438815 80439169 -63347286 + MLT1E LTR MaLR 15 355 -238 962 281 84 7 chr12 80489202 80489643 -63296812 + L1MEc LINE L1 1388 1862 -4534 354 361 118 12 chr12 80489757 80490012 -63296443 + L1M4 LINE L1 3955 4236 -1910 421 248 64 41 chr12 80490330 80490548 -63295907 + L1MC4 LINE L1 7574 7796 -246 253 255 59 29 chr12 80490560 80490662 -63295793 - MLT1H LTR MaLR -16 551 447 492 276 65 51 chr12 80490746 80491021 -63295434 - MLT1H LTR MaLR -258 291 13 649 212 28 88 chr12 80491038 80491288 -63295167 + L1MC4 LINE L1 7807 8041 -1 5300 167 2 3 chr12 80491501 80492529 -63293926 - L1P LINE L1 -1300 4846 3820 451 260 39 50 chr12 80492648 80492906 -63293549 + L1M4c LINE L1 1357 1999 -4384 444 268 92 44 chr12 80493388 80493660 -63292795 + MLT1K LTR MaLR 250 534 -54 2340 200 54 9 chr12 80494315 80494891 -63291564 + LTR1B LTR ERV1 1 602 -224 7084 111 1 6 chr12 80495028 80496109 -63290346 + L1P LINE L1 2 1077 -5069 2381 187 74 27 chr12 80496544 80497233 -63289222 - LTR1B LTR ERV1 -67 718 13 577 234 208 5 chr12 80497465 80497657 -63288798 + MIR SINE MIR 4 234 -28 248 285 19 63 chr12 80499364 80499522 -63286933 + LTR16C LTR ERVL 340 490 -1 337 380 31 8 chr12 80500336 80500465 -63285990 + L2 LINE L2 3141 3272 0 224 167 24 24 chr12 80501145 80501229 -63285226 + (TA)n Simple_repeat Simple_repeat 1 84 0 242 71 24 0 chr12 80501230 80501272 -63285183 - L1PA16 LINE L1 -9 6157 6115 1591 306 132 22 chr12 80501308 80502321 -63284134 + L2 LINE L2 1728 2852 -462 367 238 25 81 chr12 80505233 80505393 -63281062 - LTR16C LTR ERVL -1 490 340 194 329 13 13 chr12 80505718 80505794 -63280661 + L2 LINE L2 3190 3265 -7 225 333 28 21 chr12 80506439 80506580 -63279875 - MLT1K LTR MaLR -170 418 277 602 219 214 10 chr12 80507099 80507291 -63279164 - MIR SINE MIR -28 234 4 231 36 0 0 chr12 80508282 80508310 -63278145 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 208 313 0 0 chr12 80508310 80508358 -63278097 - L2 LINE L2 -13 3300 3253 419 257 115 0 chr12 80510639 80510752 -63275703 - L2 LINE L2 -6 3266 3141 402 326 59 41 chr12 80511116 80511386 -63275069 - MLT1L LTR MaLR -221 394 120 271 274 131 0 chr12 80511848 80511932 -63274523 - MIR SINE MIR -72 190 96 1946 154 0 3 chr12 80514570 80514863 -63271592 - AluJb SINE Alu -16 296 5 278 139 0 0 chr12 80514995 80515038 -63271417 + AluJb SINE Alu 86 128 -174 784 168 0 0 chr12 80515042 80515161 -63271294 - FLAM_C SINE Alu -10 123 5 627 223 82 22 chr12 80515161 80515345 -63271110 - MER21B LTR ERV1 -668 195 1 1836 184 40 28 chr12 80515826 80516251 -63270204 - Tigger2a DNA MER2_type -4 430 1 30 0 0 0 chr12 80516485 80516515 -63269940 + AT_rich Low_complexity Low_complexity 1 30 0 14367 157 32 16 chr12 80516519 80517421 -63269034 - L1MA3 LINE L1 0 7724 6838 6980 60 106 0 chr12 80517421 80518452 -63268003 - L1PA8 LINE L1 -13 6159 5101 14367 157 32 16 chr12 80518452 80521615 -63264840 - L1MA3 LINE L1 -886 6838 3726 2172 120 7 0 chr12 80521615 80521915 -63264540 - AluSc SINE Alu -7 302 1 14367 157 32 16 chr12 80521915 80522241 -63264214 - L1MA3 LINE L1 -3998 3726 3407 2266 104 0 3 chr12 80522241 80522540 -63263915 - AluSc SINE Alu -7 302 5 14367 157 32 16 chr12 80522540 80522811 -63263644 - L1MA3 LINE L1 -4317 3407 2974 2935 176 9 38 chr12 80522814 80523388 -63263067 - L1MA3 LINE L1 -6990 575 19 731 294 87 39 chr12 80523398 80523891 -63262564 + MLT2F LTR ERVL 95 659 -4 29 0 0 0 chr12 80524395 80524424 -63262031 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 80524506 80524526 -63261929 + (CAA)n Simple_repeat Simple_repeat 2 21 0 281 230 74 22 chr12 80524937 80525072 -63261383 - L1ME4a LINE L1 -15 6106 5965 1217 227 61 47 chr12 80525228 80525619 -63260836 - L1ME1 LINE L1 -5 6161 5767 353 235 33 162 chr12 80525837 80526109 -63260346 - L2 LINE L2 -42 3271 3035 242 290 32 8 chr12 80526192 80526316 -63260139 - L1ME4a LINE L1 -540 5804 5678 527 210 76 8 chr12 80526331 80526450 -63260005 + FLAM_A SINE Alu 3 129 -4 334 269 62 59 chr12 80526541 80526797 -63259658 - L1ME4a LINE L1 -2301 3845 3589 1152 237 119 20 chr12 80527243 80527548 -63258907 + L1MEc LINE L1 45 399 -5997 213 39 0 0 chr12 80527548 80527574 -63258881 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1152 237 119 20 chr12 80527574 80527664 -63258791 + L1MEc LINE L1 399 479 -5917 5441 116 40 2 chr12 80527694 80529399 -63257056 + L1PA16 LINE L1 4407 6157 -9 186 133 0 0 chr12 80529428 80529458 -63256997 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 2747 266 113 40 chr12 80529485 80530965 -63255490 + L1ME LINE L1 275 1862 -4534 225 383 69 0 chr12 80531082 80531270 -63255185 + L1ME LINE L1 4026 4226 -1989 344 241 95 80 chr12 80531361 80531586 -63254869 + L1ME LINE L1 4381 4612 -1603 2059 86 0 11 chr12 80531586 80531855 -63254600 + AluSg SINE Alu 1 266 -44 344 241 95 80 chr12 80531855 80531903 -63254552 + L1ME LINE L1 4612 4658 -1557 337 266 62 23 chr12 80531909 80532037 -63254418 + L1ME LINE L1 4755 4887 -1328 308 292 58 0 chr12 80532091 80532228 -63254227 + L1ME LINE L1 5110 5254 -961 320 300 67 29 chr12 80532309 80532519 -63253936 + L1ME LINE L1 5437 5654 -579 2477 56 0 3 chr12 80532634 80532938 -63253517 - AluY SINE Alu -8 303 1 27 49 0 0 chr12 80532964 80533005 -63253450 + AT_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr12 80533012 80533056 -63253399 + AT_rich Low_complexity Low_complexity 1 44 0 467 240 74 40 chr12 80533257 80533432 -63253023 - MLT1I LTR MaLR -120 289 109 396 318 191 52 chr12 80534239 80535024 -63251431 - L2 LINE L2 -9 3263 2358 489 227 0 0 chr12 80536031 80536128 -63250327 + MER69 DNA AcHobo 33 129 -1097 376 211 30 3 chr12 80536103 80536212 -63250243 + MER69 DNA AcHobo 2412 2525 -1 * 487 262 16 8 chr12 80539522 80539648 -63246807 + MER5B DNA MER1_type 1 127 -51 2040 119 11 3 chr12 80539661 80539947 -63246508 + AluSc SINE Alu 1 288 -21 2496 143 66 16 chr12 80541303 80541730 -63244725 + MER4D LTR ERV1 1 448 -455 208 333 83 19 chr12 80541832 80541940 -63244515 - L3 LINE CR1 -1164 413 299 2248 140 8 11 chr12 80541952 80542317 -63244138 + THE1B LTR MaLR 1 364 0 10097 113 23 32 chr12 80542320 80543911 -63242544 + THE1B-int LTR MaLR 5 1580 0 2377 118 11 14 chr12 80543912 80544276 -63242179 + THE1B LTR MaLR 2 364 0 24 32 0 0 chr12 80544926 80544957 -63241498 + AT_rich Low_complexity Low_complexity 1 31 0 1001 44 7 0 chr12 80547226 80547361 -63239094 + (TAGA)n Simple_repeat Simple_repeat 4 139 0 762 231 11 16 chr12 80548805 80548991 -63237464 + MER5A DNA MER1_type 5 189 0 441 138 0 0 chr12 80549080 80549145 -63237310 + MLT1G LTR MaLR 1 65 -530 889 284 15 34 chr12 80549149 80549467 -63236988 + MLT1G LTR MaLR 33 312 -283 539 176 5 65 chr12 80549492 80549644 -63236811 + MLT1F LTR MaLR 383 590 -36 316 268 50 50 chr12 80550028 80550207 -63236248 - L1M4 LINE L1 -1596 4550 4372 306 306 16 0 chr12 80550345 80550469 -63235986 - L1M4 LINE L1 -1909 4237 4112 24 67 0 0 chr12 80550471 80550516 -63235939 + AT_rich Low_complexity Low_complexity 1 45 0 236 273 0 52 chr12 80550982 80551059 -63235396 - MIR SINE MIR 0 262 190 183 374 157 39 chr12 80551267 80551655 -63234800 + L2 LINE L2 2819 3252 -20 271 327 159 0 chr12 80552016 80552123 -63234332 + L2 LINE L2 3190 3313 0 1503 198 69 71 chr12 80552487 80552951 -63233504 + MLT1C LTR MaLR 5 467 0 251 260 78 0 chr12 80554945 80555022 -63231433 + MIR SINE MIR 22 104 -104 303 303 118 7 chr12 80555294 80555446 -63231009 - MIR SINE MIR -46 216 48 3530 45 5 2 chr12 80555972 80556418 -63230037 + LTR7 LTR ERV1 1 447 -3 280 268 143 56 chr12 80557823 80558024 -63228431 + MIR3 SINE MIR 2 224 -38 4301 193 56 17 chr12 80558053 80559181 -63227274 - L1MB8 LINE L1 -2 6987 5818 390 313 42 72 chr12 80559244 80559509 -63226946 - L1ME4a LINE L1 -22 6099 5843 866 175 6 6 chr12 80559935 80560112 -63226343 - L1MB8 LINE L1 -3701 3256 3080 380 287 103 3 chr12 80560089 80560289 -63226166 - L1MB8 LINE L1 -6083 776 504 * 249 217 17 0 chr12 80560670 80560730 -63225725 + LTR37A LTR ERV1 118 178 -248 679 143 39 7 chr12 80560764 80560918 -63225537 + LTR37A LTR ERV1 268 426 0 369 0 0 0 chr12 80561223 80561264 -63225191 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr12 80561313 80561334 -63225121 + AT_rich Low_complexity Low_complexity 1 21 0 732 227 68 17 chr12 80562726 80562917 -63223538 - MIR SINE MIR -49 213 2 212 143 0 0 chr12 80563213 80563248 -63223207 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr12 80564671 80564708 -63221747 + AT_rich Low_complexity Low_complexity 1 37 0 218 250 356 0 chr12 80564904 80565008 -63221447 - L2 LINE L2 -13 3300 3160 1871 154 0 20 chr12 80565045 80565350 -63221105 + AluSx SINE Alu 2 300 -12 3681 179 31 8 chr12 80565362 80566081 -63220374 + L1MB1 LINE L1 5433 6167 -1 219 316 199 29 chr12 80566124 80566330 -63220125 - L2 LINE L2 -179 3093 2853 270 328 131 22 chr12 80566777 80567228 -63219227 - L2 LINE L2 -903 2411 1912 393 305 52 90 chr12 80567301 80567744 -63218711 + L1MEd LINE L1 19 444 -5675 2454 60 0 22 chr12 80567940 80568258 -63218197 - AluY SINE Alu 0 311 1 311 78 20 0 chr12 80568266 80568317 -63218138 + (TC)n Simple_repeat Simple_repeat 1 52 0 367 231 128 52 chr12 80568327 80568611 -63217844 + L1MEd LINE L1 681 957 -5162 253 333 34 34 chr12 80568759 80568936 -63217519 - LTR33 LTR ERVL -7 514 338 364 268 73 0 chr12 80569112 80569235 -63217220 - LTR33 LTR ERVL -310 211 80 237 290 101 17 chr12 80569629 80569761 -63216694 + Charlie8 DNA MER1_type 140 278 -2139 193 244 116 23 chr12 80570230 80570316 -63216139 + L2 LINE L2 2778 2871 -443 1680 157 202 3 chr12 80572281 80572465 -63213990 + MSTA LTR MaLR 1 147 -281 306 50 0 0 chr12 80572465 80572505 -63213950 + (TC)n Simple_repeat Simple_repeat 1 40 0 1680 157 202 3 chr12 80572505 80572677 -63213778 + MSTA LTR MaLR 147 428 0 325 242 70 70 chr12 80572724 80572852 -63213603 - MIR SINE MIR -116 146 19 507 247 18 59 chr12 80572938 80573108 -63213347 - L2 LINE L2 -1 3312 3150 2075 154 21 5 chr12 80573116 80573498 -63212957 + L1MB7 LINE L1 5642 6029 -155 441 343 75 22 chr12 80573605 80573917 -63212538 - L2 LINE L2 -248 3065 2719 770 305 84 19 chr12 80573921 80574242 -63212213 - L2 LINE L2 -2 3311 2970 * 1584 276 107 17 chr12 80574235 80574832 -63211623 - L2 LINE L2 -1231 2083 1433 5162 107 81 7 chr12 80574862 80576158 -63210297 + L1PA16 LINE L1 4307 5714 -452 2629 120 3 0 chr12 80576158 80576532 -63209923 + THE1C LTR MaLR 1 375 0 5162 107 81 7 chr12 80576532 80577011 -63209444 + L1PA16 LINE L1 5714 6156 -10 337 333 93 0 chr12 80577012 80577141 -63209314 - L2 LINE L2 -607 2707 2567 255 247 96 0 chr12 80578642 80578715 -63207740 - MIR SINE MIR -19 243 164 415 255 11 0 chr12 80579117 80579211 -63207244 + MER5A DNA MER1_type 10 104 -85 2624 310 89 21 chr12 80580288 80582058 -63204397 - ERVL LTR ERVL -1167 4597 2656 546 234 35 84 chr12 80582707 80582933 -63203522 + MER102a DNA MER1_type 108 322 -8 940 178 195 12 chr12 80583651 80583928 -63202527 + MLT2B2 LTR ERVL 1 397 -157 507 56 0 0 chr12 80583928 80583999 -63202456 + (CCA)n Simple_repeat Simple_repeat 2 72 0 940 178 195 12 chr12 80583999 80584061 -63202394 + MLT2B2 LTR ERVL 397 446 -108 509 0 16 0 chr12 80584074 80584135 -63202320 + (TG)n Simple_repeat Simple_repeat 2 63 0 324 322 91 0 chr12 80584157 80584278 -63202177 + MIR SINE MIR 81 212 -50 6189 136 93 121 chr12 80584839 80586585 -63199870 - pTR5 LTR ERV1 0 2438 742 23 33 0 0 chr12 80587285 80587315 -63199140 + AT_rich Low_complexity Low_complexity 1 30 0 355 150 12 38 chr12 80587820 80587900 -63198555 + MER116 DNA Mariner 3 80 0 24 0 0 0 chr12 80589910 80589934 -63196521 + AT_rich Low_complexity Low_complexity 1 24 0 646 290 90 19 chr12 80590554 80590864 -63195591 - MLT1J2 LTR MaLR -118 332 1 654 262 55 22 chr12 80590899 80591170 -63195285 - MER102b DNA MER1_type -10 331 52 197 350 124 77 chr12 80591614 80591937 -63194518 - L2 LINE L2 -1 3271 2934 22 0 0 0 chr12 80593739 80593761 -63192694 + AT_rich Low_complexity Low_complexity 1 22 0 226 295 74 0 chr12 80594991 80595086 -63191369 + LTR16A LTR ERVL 87 188 -262 1524 146 0 54 chr12 80595105 80595366 -63191089 - AluJb SINE Alu -65 247 1 258 176 29 15 chr12 80595492 80595560 -63190895 + LTR16A LTR ERVL 382 450 0 321 302 0 0 chr12 80595619 80595725 -63190730 - HsTC2 DNA Tc2 -1014 884 779 1805 179 6 6 chr12 80596103 80596454 -63190001 + L1MB1 LINE L1 5817 6167 -1 1577 249 39 23 chr12 80596494 80597056 -63189399 + L1MC4 LINE L1 7226 7796 -246 353 219 8 92 chr12 80597060 80597179 -63189276 - MLT1H LTR MaLR -8 541 433 627 258 63 49 chr12 80597253 80597540 -63188915 - MLT1H LTR MaLR -258 291 1 734 196 28 88 chr12 80597544 80597794 -63188661 + L1MC4 LINE L1 7807 8041 -1 392 315 14 14 chr12 80599010 80599153 -63187302 + MIR SINE MIR 119 261 -1 359 387 35 0 chr12 80599955 80600128 -63186327 - MER91B DNA MER1_type -8 182 4 547 210 54 137 chr12 80600706 80600911 -63185544 + MER5A DNA MER1_type 2 189 0 576 164 86 8 chr12 80601562 80601690 -63184765 + MLT1B LTR MaLR 1 138 -252 863 156 0 30 chr12 80601702 80601716 -63184739 - AluJb SINE Alu -181 131 118 267 31 0 0 chr12 80601716 80601748 -63184707 + (TTA)n Simple_repeat Simple_repeat 2 33 0 863 156 0 30 chr12 80601748 80601868 -63184587 - AluJb SINE Alu -194 118 1 785 223 34 9 chr12 80601871 80602095 -63184360 + MLT1B LTR MaLR 141 386 -4 406 212 139 22 chr12 80602107 80602244 -63184211 + MER5B DNA MER1_type 26 178 0 235 310 23 23 chr12 80603109 80603196 -63183259 - LTR67 LTR ERVL -379 178 92 889 318 94 15 chr12 80603524 80604487 -63181968 - ERVL LTR ERVL -822 4942 3704 450 0 0 0 chr12 80604487 80604537 -63181918 + (CA)n Simple_repeat Simple_repeat 2 51 0 889 318 94 15 chr12 80604537 80605000 -63181455 - ERVL LTR ERVL -2060 3704 3279 315 297 0 42 chr12 80605024 80605142 -63181313 + L1MC4 LINE L1 6595 6707 -1335 1801 149 13 19 chr12 80605155 80605470 -63180985 + MER7A DNA MER2_type 1 311 -35 2243 81 0 7 chr12 80605470 80605765 -63180690 + AluY SINE Alu 1 293 -18 490 354 12 8 chr12 80605843 80606083 -63180372 - ERVL LTR ERVL -3579 2185 1945 1673 199 21 3 chr12 80606457 80606784 -63179671 + LTR32 LTR ERVL 15 347 -124 860 154 0 7 chr12 80606932 80607081 -63179374 + LTR32 LTR ERVL 324 471 0 2098 123 7 0 chr12 80607313 80607615 -63178840 - AluSq SINE Alu -9 304 1 294 259 72 7 chr12 80608752 80608891 -63177564 - LTR67 LTR ERVL -2 555 408 316 246 130 7 chr12 80609495 80609633 -63176822 - L1MA10 LINE L1 -2 6332 6178 2376 87 0 0 chr12 80609994 80610292 -63176163 - AluSc SINE Alu -11 298 1 746 225 15 70 chr12 80610668 80610712 -63175743 - MER5A DNA MER1_type 0 189 144 1830 139 3 14 chr12 80610712 80611039 -63175416 - AluSx SINE Alu 0 327 4 746 225 15 70 chr12 80611039 80611192 -63175263 - MER5A DNA MER1_type -45 144 1 337 380 31 8 chr12 80612221 80612350 -63174105 + L2 LINE L2 3141 3272 0 224 167 24 24 chr12 80613030 80613114 -63173341 + (TA)n Simple_repeat Simple_repeat 1 84 0 242 71 24 0 chr12 80613115 80613157 -63173298 - L1PA16 LINE L1 -9 6157 6115 2479 272 125 18 chr12 80613193 80614215 -63172240 + L2 LINE L2 1728 2859 -455 539 49 136 0 chr12 80614253 80614334 -63172121 + AluSg/x SINE Alu 214 305 -4 529 274 175 49 chr12 80614351 80614676 -63171779 + L2 LINE L2 2942 3307 -6 41840 44 3 1 chr12 80614902 80621047 -63165408 + L1PA4 LINE L1 2 6155 0 632 332 70 10 chr12 80621138 80621436 -63165019 + L2 LINE L2 2994 3309 -4 256 320 29 0 chr12 80621468 80621640 -63164815 + L1ME LINE L1 5707 5883 -238 280 331 32 32 chr12 80623253 80623410 -63163045 + MIR SINE MIR 47 203 -59 3224 171 95 13 chr12 80624165 80624873 -63161582 + LTR1B LTR ERV1 1 766 -60 326 343 63 6 chr12 80625896 80626071 -63160384 + L1ME LINE L1 5616 5800 -321 3361 240 92 31 chr12 80626101 80627130 -63159325 + L1M4b LINE L1 18 1109 -5750 4477 141 56 10 chr12 80628148 80628938 -63157517 - LTR1B LTR ERV1 0 826 1 1243 264 116 41 chr12 80628980 80629634 -63156821 - MER50 LTR ERV1 -22 712 10 193 311 132 9 chr12 80629749 80629855 -63156600 + L2 LINE L2 3194 3312 -1 475 351 117 5 chr12 80630627 80630849 -63155606 - MIR SINE MIR -5 257 11 815 262 108 64 chr12 80631723 80631752 -63154703 - MLT1H LTR MaLR -37 512 486 2078 110 14 0 chr12 80631752 80632042 -63154413 - AluSx SINE Alu -16 296 3 815 262 108 64 chr12 80632042 80632482 -63153973 - MLT1H LTR MaLR -63 486 22 913 141 0 47 chr12 80632531 80632701 -63153754 + L1MD1 LINE L1 6076 6237 -5 842 177 0 0 chr12 80632745 80632869 -63153586 + FLAM_C SINE Alu 1 124 -19 189 0 0 0 chr12 80632872 80632893 -63153562 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 229 306 130 9 chr12 80632988 80633096 -63153359 - L2 LINE L2 -3 3310 3190 1848 161 0 7 chr12 80633182 80633487 -63152968 + AluJo SINE Alu 6 308 -4 347 333 71 26 chr12 80633995 80634262 -63152193 + MLT1K LTR MaLR 310 588 0 2050 189 9 21 chr12 80634717 80634760 -63151695 - MLT2D LTR ERVL 0 414 372 297 0 0 0 chr12 80634760 80634793 -63151662 + (TG)n Simple_repeat Simple_repeat 2 34 0 2050 189 9 21 chr12 80634793 80635168 -63151287 - MLT2D LTR ERVL -42 372 1 536 262 73 52 chr12 80635307 80635498 -63150957 + MIR3 SINE MIR 4 198 -10 2866 203 18 136 chr12 80635937 80637804 -63148651 + L1M3a LINE L1 11 1651 -4384 541 259 91 44 chr12 80638296 80638570 -63147885 + MLT1K LTR MaLR 250 536 -52 367 294 49 31 chr12 80638594 80638757 -63147698 - MARNA DNA Mariner -370 216 51 334 194 0 0 chr12 80638817 80638879 -63147576 - LTR3b LTR ERVK 0 500 439 1855 166 48 60 chr12 80638880 80639314 -63147141 - LTR3 LTR ERVK 0 429 1 254 267 13 40 chr12 80639358 80639433 -63147022 - MLT1K LTR MaLR -514 74 2 1715 156 3 64 chr12 80639753 80640067 -63146388 + AluJo SINE Alu 1 295 -17 2069 277 90 64 chr12 80641005 80642236 -63144219 - L2 LINE L2 -1 3312 2067 414 316 131 6 chr12 80642264 80642432 -63144023 - MIR SINE MIR -72 190 2 603 323 49 80 chr12 80642936 80643586 -63142869 + L2 LINE L2 1050 1679 -1635 257 218 13 51 chr12 80643831 80643909 -63142546 - MIR SINE MIR -5 257 183 522 206 43 7 chr12 80644577 80644718 -63141737 - MER104 DNA Tc2 0 180 35 453 19 0 0 chr12 80645293 80645347 -63141108 + (CA)n Simple_repeat Simple_repeat 1 54 0 570 63 0 0 chr12 80646007 80646086 -63140369 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 309 331 16 8 chr12 80646347 80646471 -63139984 - MIR3 SINE MIR -3 205 81 350 297 127 34 chr12 80649317 80649553 -63136902 + L1M3a LINE L1 2626 2883 -3151 494 340 165 12 chr12 80649577 80649989 -63136466 + L2 LINE L2 2324 2798 -516 404 298 58 21 chr12 80649996 80650187 -63136268 + Charlie8 DNA MER1_type 13 210 -2207 1203 181 55 16 chr12 80650251 80650560 -63135895 - L1MA9 LINE L1 -5 6307 5987 442 120 0 0 chr12 80650567 80650642 -63135813 - AluSx SINE Alu 0 312 238 1538 77 0 0 chr12 80650643 80650824 -63135631 - AluSx SINE Alu -131 181 1 1622 171 14 41 chr12 80650896 80651242 -63135213 - AluJo SINE Alu 0 338 1 609 14 0 0 chr12 80651488 80651558 -63134897 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 191 240 10 140 chr12 80651587 80651687 -63134768 - L2 LINE L2 -12 3301 3215 7089 54 1 10 chr12 80651687 80652651 -63133804 + L1PA5 LINE L1 5199 6154 0 317 133 17 0 chr12 80652651 80652708 -63133747 + L1PB1 LINE L1 6090 6150 -1 211 47 93 0 chr12 80652798 80652841 -63133614 + A-rich Low_complexity Low_complexity 4 50 0 321 289 138 38 chr12 80654206 80654365 -63132090 + MIR SINE MIR 80 254 -8 266 274 0 0 chr12 80654364 80654426 -63132029 + MIR3 SINE MIR 146 207 -1 * 427 222 10 0 chr12 80655135 80655234 -63131221 - L1ME3A LINE L1 -8 6162 6063 558 190 132 39 chr12 80655241 80655446 -63131009 - MLT1B LTR MaLR -166 224 1 356 238 122 14 chr12 80655464 80655611 -63130844 - MIR SINE MIR 0 262 100 484 272 35 17 chr12 80655614 80655787 -63130668 + L2 LINE L2 2709 2884 -430 201 277 10 79 chr12 80658102 80658203 -63128252 + MIR SINE MIR 103 196 -66 219 114 0 0 chr12 80659678 80659713 -63126742 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 244 274 0 27 chr12 80659714 80659787 -63126668 - MIR SINE MIR -164 98 28 795 273 55 4 chr12 80659881 80660119 -63126336 - MIR SINE MIR 0 262 13 186 268 14 28 chr12 80661557 80661628 -63124827 + MIR3 SINE MIR 107 176 -32 315 49 0 0 chr12 80662295 80662336 -63124119 + (CAA)n Simple_repeat Simple_repeat 1 41 0 245 346 50 40 chr12 80662507 80662709 -63123746 - L2 LINE L2 -345 2969 2766 190 0 67 0 chr12 80663201 80663231 -63123224 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1088 126 16 21 chr12 80663752 80663942 -63122513 - MER53 DNA DNA 0 189 1 386 234 213 14 chr12 80664066 80664207 -63122248 + MER5B DNA MER1_type 10 178 0 378 225 38 0 chr12 80664354 80664434 -63122021 + Tigger3(Golem) DNA MER2_type 2945 3027 -2 180 238 32 48 chr12 80665589 80665652 -63120803 - MIR SINE MIR -115 147 86 213 39 0 0 chr12 80666198 80666224 -63120231 + (CA)n Simple_repeat Simple_repeat 1 26 0 336 294 209 16 chr12 80666260 80666447 -63120008 - L2 LINE L2 -172 3141 2919 265 330 115 5 chr12 80667059 80667250 -63119205 - MLT1J LTR MaLR -294 217 6 366 23 0 0 chr12 80667582 80667625 -63118830 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 526 192 0 20 chr12 80667697 80667796 -63118659 + MLT1J2 LTR MaLR 36 132 -318 545 213 154 32 chr12 80667823 80668044 -63118411 + MLT1J1 LTR MaLR 191 438 -8 499 188 28 150 chr12 80668711 80668924 -63117531 + MER102a DNA MER1_type 143 329 -1 6080 96 10 44 chr12 80669635 80670852 -63115603 + L1PA14 LINE L1 4971 6161 0 1239 123 23 0 chr12 80671166 80671337 -63115118 + AluSg/x SINE Alu 117 291 -21 181 185 31 0 chr12 80671376 80671441 -63115014 + (TA)n Simple_repeat Simple_repeat 2 68 0 2108 105 7 3 chr12 80671804 80672090 -63114365 - AluSg SINE Alu -10 300 14 504 219 143 46 chr12 80672755 80672951 -63113504 - MER54B LTR ERVL -111 682 468 230 156 0 0 chr12 80672951 80672996 -63113459 + CT-rich Low_complexity Low_complexity 2 46 0 525 191 0 29 chr12 80672996 80673101 -63113354 - MER54B LTR ERVL -293 500 399 382 193 11 0 chr12 80673660 80673748 -63112707 - L1PB4 LINE L1 0 6156 6068 1899 119 37 4 chr12 80674451 80674720 -63111735 + AluSx SINE Alu 21 298 -14 264 300 95 121 chr12 80675504 80675884 -63110571 + L2 LINE L2 2899 3268 -4 205 280 20 0 chr12 80676668 80676718 -63109737 - MER5A DNA MER1_type -83 106 56 244 242 77 44 chr12 80676775 80676866 -63109589 + MER5A DNA MER1_type 4 97 -92 414 258 78 71 chr12 80677507 80677740 -63108715 - MIR SINE MIR -17 245 5 338 217 0 0 chr12 80678083 80678143 -63108312 - MER5A DNA MER1_type -129 60 1 871 152 43 27 chr12 80679460 80679644 -63106811 + MER41B LTR ERV1 449 635 0 2285 152 124 9 chr12 80680121 80680574 -63105881 - MLT1D LTR MaLR 0 505 1 633 188 32 34 chr12 80680807 80680941 -63105514 - MER58 DNA MER1_type -2 2418 2285 1855 131 33 0 chr12 80680941 80681242 -63105213 + AluSx SINE Alu 1 310 0 633 188 32 34 chr12 80681242 80681320 -63105135 - MER58 DNA MER1_type -135 2285 1 206 333 51 17 chr12 80681435 80681552 -63104903 + L2 LINE L2 2926 3046 -226 966 249 21 4 chr12 80681895 80682128 -63104327 + MIR SINE MIR 2 238 -24 1608 185 45 47 chr12 80682716 80682916 -63103539 + L1MA9 LINE L1 5861 6060 -252 1580 175 7 39 chr12 80682916 80683224 -63103231 - AluSx SINE Alu -12 300 3 1608 185 45 47 chr12 80683224 80683318 -63103137 + L1MA9 LINE L1 6060 6153 -159 276 77 0 0 chr12 80683318 80683357 -63103098 + (CA)n Simple_repeat Simple_repeat 2 40 0 1608 185 45 47 chr12 80683357 80683427 -63103028 + L1MA9 LINE L1 6153 6227 -85 1215 151 24 5 chr12 80683427 80683633 -63102822 - MER6B DNA MER2_type 0 210 1 1608 185 45 47 chr12 80683633 80683688 -63102767 + L1MA9 LINE L1 6227 6281 -31 22 35 0 0 chr12 80684016 80684045 -63102410 + AT_rich Low_complexity Low_complexity 1 29 0 239 328 0 0 chr12 80684720 80684787 -63101668 + L2 LINE L2 3010 3076 -196 811 180 34 45 chr12 80684818 80684996 -63101459 + MER58A DNA MER1_type 47 222 -2 200 229 0 21 chr12 80686216 80686227 -63100228 + (CAAT)n Simple_repeat Simple_repeat 2 12 -36 4302 103 18 9 chr12 80686227 80686857 -63099598 + MER41B LTR ERV1 1 635 0 200 229 0 21 chr12 80686857 80686893 -63099562 + (CAAT)n Simple_repeat Simple_repeat 12 48 0 880 148 172 19 chr12 80687333 80687542 -63098913 - MLT1D LTR MaLR 0 505 265 851 224 95 39 chr12 80688101 80688333 -63098122 - MIR SINE MIR 0 262 18 2438 54 0 3 chr12 80688826 80689122 -63097333 - AluY SINE Alu -16 295 1 198 173 67 93 chr12 80691630 80691705 -63094750 + L3 LINE CR1 626 698 -879 319 73 0 0 chr12 80691731 80691772 -63094683 + L1PA7 LINE L1 6103 6143 -11 225 0 0 0 chr12 80692098 80692123 -63094332 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 539 304 41 26 chr12 80693517 80693711 -63092744 - MIR SINE MIR -57 205 9 350 284 102 0 chr12 80693760 80693887 -63092568 + MIR SINE MIR 117 256 -6 565 247 19 12 chr12 80696691 80696864 -63089591 + MIR SINE MIR 47 222 -40 1941 153 7 7 chr12 80697205 80697513 -63088942 + AluJb SINE Alu 1 308 -4 454 293 113 29 chr12 80697594 80697833 -63088622 - MIR SINE MIR 0 262 4 1951 176 0 0 chr12 80697931 80698237 -63088218 + AluJb SINE Alu 1 306 -6 651 133 0 0 chr12 80698237 80698342 -63088113 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 1070 212 63 19 chr12 80698458 80698810 -63087645 + MLT1F1 LTR MaLR 172 567 0 980 220 38 8 chr12 80698946 80699182 -63087273 - MIR SINE MIR -3 259 17 274 222 17 76 chr12 80699340 80699451 -63087004 - MIR SINE MIR -27 181 97 334 380 7 0 chr12 80701783 80701933 -63084522 - MIR SINE MIR -4 258 108 1837 103 4 0 chr12 80702698 80702932 -63083523 - AluSp SINE Alu -78 235 1 306 73 0 0 chr12 80702950 80702991 -63083464 + (CA)n Simple_repeat Simple_repeat 2 42 0 1009 179 0 42 chr12 80703028 80703218 -63083237 + AluJo SINE Alu 1 182 -130 236 0 0 0 chr12 80704192 80704220 -63082235 + LTR7 LTR ERV1 1 28 -422 * 1537 73 5 9 chr12 80704218 80704438 -63082017 + LTR7 LTR ERV1 230 448 -2 2318 267 180 22 chr12 80706494 80707512 -63078943 + L2 LINE L2 615 1793 -1521 349 198 12 35 chr12 80707513 80707599 -63078856 + L2 LINE L2 1902 1985 -1329 1378 117 38 25 chr12 80707599 80707838 -63078617 + THE1B LTR MaLR 1 242 -122 1285 249 102 0 chr12 80707838 80708180 -63078275 + L2 LINE L2 2065 2441 -873 456 227 30 10 chr12 80708180 80708320 -63078135 - MLT1H LTR MaLR 0 549 410 325 316 6 63 chr12 80708374 80708548 -63077907 - MLT1H LTR MaLR -241 308 145 1661 287 35 46 chr12 80708673 80709567 -63076888 + L2 LINE L2 2437 3313 0 776 213 162 0 chr12 80712128 80712325 -63074130 + MIR SINE MIR 15 243 -19 4498 178 38 27 chr12 80712488 80713459 -63072996 + Tigger1 DNA MER2_type 3 984 -1434 200 232 0 36 chr12 80713996 80714052 -63072403 + L2 LINE L2 2932 2985 -328 211 250 100 0 chr12 80714359 80714419 -63072036 + MIR SINE MIR 87 152 -110 2672 86 19 6 chr12 80714419 80714778 -63071677 + THE1B LTR MaLR 1 364 0 11112 95 16 29 chr12 80714778 80716379 -63070076 + THE1B-int LTR MaLR 1 1580 0 2273 118 33 36 chr12 80716379 80716744 -63069711 + THE1B LTR MaLR 1 364 0 422 94 0 0 chr12 80716745 80716809 -63069646 + THE1B-int LTR MaLR 1517 1580 0 2310 137 22 6 chr12 80716809 80717167 -63069288 + THE1B LTR MaLR 1 364 0 329 261 99 35 chr12 80717256 80717398 -63069057 + Charlie8 DNA MER1_type 1 151 -2266 231 244 0 0 chr12 80717410 80717488 -63068967 + GA-rich Low_complexity Low_complexity 2 79 0 509 279 87 55 chr12 80717495 80717807 -63068648 + Charlie8 DNA MER1_type 175 496 -1921 286 265 0 0 chr12 80717808 80717876 -63068579 + Charlie8 DNA MER1_type 2345 2412 -5 262 239 138 55 chr12 80717883 80717992 -63068463 + L2 LINE L2 3191 3308 -5 1017 207 48 0 chr12 80718212 80718420 -63068035 - MER58A DNA MER1_type 0 224 7 209 347 0 25 chr12 80719069 80719190 -63067265 + GA-rich Low_complexity Low_complexity 2 119 0 7758 155 37 4 chr12 80720333 80721714 -63064741 - Tigger1 DNA MER2_type -4 2414 988 1005 164 103 65 chr12 80721834 80722051 -63064404 + MSTA LTR MaLR 157 387 -41 2034 139 0 3 chr12 80722051 80722360 -63064095 - AluSg SINE Alu -2 308 1 1005 164 103 65 chr12 80722360 80722404 -63064051 + MSTA LTR MaLR 387 428 0 24 32 0 0 chr12 80722413 80722444 -63064011 + AT_rich Low_complexity Low_complexity 1 31 0 1822 155 48 118 chr12 80723113 80723656 -63062799 + MLT1D LTR MaLR 1 505 0 324 317 75 50 chr12 80724012 80724173 -63062282 - MIR3 SINE MIR -1 207 43 990 229 50 23 chr12 80724594 80724812 -63061643 - MIR SINE MIR -8 254 31 182 336 60 60 chr12 80724817 80724933 -63061522 + L2 LINE L2 3126 3241 -31 472 259 35 116 chr12 80724934 80725193 -63061262 + MIR SINE MIR 2 239 -23 213 283 85 19 chr12 80725521 80725627 -63060828 - L3 LINE CR1 -323 1254 1142 260 338 60 53 chr12 80725654 80725805 -63060650 - L2 LINE L2 -44 3228 3077 2281 103 0 0 chr12 80725811 80726101 -63060354 - AluSp SINE Alu -23 290 1 181 224 17 35 chr12 80726375 80726433 -63060022 + L2 LINE L2 3216 3272 0 187 273 0 144 chr12 80726753 80726885 -63059570 + L2 LINE L2 2947 3059 -254 231 258 0 16 chr12 80727085 80727147 -63059308 + (CA)n Simple_repeat Simple_repeat 2 62 0 196 108 54 0 chr12 80727182 80727219 -63059236 + L2 LINE L2 3234 3272 0 2243 122 3 0 chr12 80727463 80727767 -63058688 + AluSx SINE Alu 1 305 -7 215 303 0 0 chr12 80727909 80727985 -63058470 + CT-rich Low_complexity Low_complexity 2 77 0 3019 192 71 59 chr12 80727985 80729225 -63057230 + L1MDa LINE L1 88 1597 -4943 241 307 38 42 chr12 80729432 80729644 -63056811 + L1ME LINE L1 5588 5798 -323 306 286 67 57 chr12 80730141 80730246 -63056209 - MIR SINE MIR 0 262 157 * 443 281 9 9 chr12 80730241 80730355 -63056100 - MIR SINE MIR -30 232 119 204 125 0 0 chr12 80731616 80731648 -63054807 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 21 0 0 0 chr12 80733321 80733342 -63053113 + AT_rich Low_complexity Low_complexity 1 21 0 13721 143 21 5 chr12 80733847 80736189 -63050266 + Tigger1 DNA MER2_type 1 2380 -38 227 294 55 41 chr12 80736356 80736502 -63049953 - MLT1K LTR MaLR -7 581 434 2358 80 3 7 chr12 80736531 80736833 -63049622 + AluY SINE Alu 1 301 -10 859 313 45 12 chr12 80736883 80737219 -63049236 - MLT1K LTR MaLR -238 350 4 537 315 113 46 chr12 80739006 80739516 -63046939 + L2 LINE L2 2613 3184 -129 180 0 0 0 chr12 80739516 80739536 -63046919 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 537 315 113 46 chr12 80739536 80739626 -63046829 + L2 LINE L2 3184 3267 -46 270 271 215 0 chr12 80742426 80742533 -63043922 + MIR3 SINE MIR 76 205 -3 398 296 99 23 chr12 80744595 80744767 -63041688 - MER5A DNA MER1_type -3 186 2 412 260 88 44 chr12 80744828 80745009 -63041446 + MIR3 SINE MIR 6 194 -14 392 352 6 25 chr12 80746953 80747112 -63039343 + MIR3 SINE MIR 23 178 -30 256 295 98 17 chr12 80747135 80747308 -63039147 - MER117 DNA MER1_type -8 189 3 725 237 85 38 chr12 80747408 80747644 -63038811 + MIR SINE MIR 15 261 -1 216 161 48 81 chr12 80750845 80750907 -63035548 + L2 LINE L2 3160 3219 -94 871 254 47 5 chr12 80750915 80751128 -63035327 + MIR SINE MIR 3 224 -38 2072 116 27 0 chr12 80751159 80751453 -63035002 - AluSx SINE Alu -10 302 1 246 208 75 19 chr12 80751489 80751542 -63034913 + L2 LINE L2 3203 3258 -14 243 0 0 0 chr12 80751544 80751571 -63034884 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2106 120 7 3 chr12 80752319 80752624 -63033831 + AluSq SINE Alu 1 306 0 203 299 158 55 chr12 80752754 80752821 -63033634 + L2 LINE L2 3173 3232 -81 1217 176 43 0 chr12 80752821 80753031 -63033424 - MER20 DNA MER1_type 0 219 1 203 299 158 55 chr12 80753031 80753090 -63033365 + L2 LINE L2 3232 3312 -1 260 309 111 12 chr12 80753129 80753210 -63033245 + MIR3 SINE MIR 2 90 -118 207 216 0 39 chr12 80753244 80753295 -63033160 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 859 280 58 60 chr12 80753295 80753932 -63032523 - L2 LINE L2 0 3313 2552 345 297 84 52 chr12 80754060 80754215 -63032240 - MIR3 SINE MIR -1 207 48 24 0 0 0 chr12 80755622 80755646 -63030809 + AT_rich Low_complexity Low_complexity 1 24 0 390 297 32 22 chr12 80756933 80757096 -63029359 - MIR SINE MIR -65 143 8 2591 57 0 16 chr12 80757488 80757804 -63028651 + AluY SINE Alu 1 311 0 2392 93 0 0 chr12 80758416 80758728 -63027727 + AluSx SINE Alu 1 312 0 397 285 126 59 chr12 80760462 80760891 -63025564 + L2 LINE L2 2714 3205 -67 357 24 0 0 chr12 80760891 80760933 -63025522 + (TTG)n Simple_repeat Simple_repeat 1 42 0 397 285 126 59 chr12 80760933 80761001 -63025454 + L2 LINE L2 3205 3267 -5 211 284 158 0 chr12 80762809 80762904 -63023551 - MIR SINE MIR 0 262 153 475 291 68 0 chr12 80762913 80763061 -63023394 + MIR SINE MIR 5 162 -100 240 324 103 28 chr12 80763085 80763230 -63023225 - MIR3 SINE MIR -50 158 3 266 336 53 18 chr12 80764360 80764473 -63021982 + MIR SINE MIR 30 146 -62 1042 214 47 51 chr12 80765786 80765950 -63020505 - MIR SINE MIR -5 257 93 2085 153 4 133 chr12 80765950 80766506 -63019949 + MER31A LTR ERV1 1 484 -1 1042 214 47 51 chr12 80766506 80766598 -63019857 - MIR SINE MIR -169 93 2 240 234 109 31 chr12 80767210 80767338 -63019117 + L1ME4a LINE L1 5968 6105 -16 324 225 101 22 chr12 80767856 80767994 -63018461 + L1ME4a LINE L1 5968 6116 -5 227 272 27 109 chr12 80769067 80769214 -63017241 - MIR SINE MIR -114 148 14 257 187 13 0 chr12 80770972 80771047 -63015408 + CT-rich Low_complexity Low_complexity 1 76 0 1357 154 29 11 chr12 80771162 80771442 -63015013 - L1MA7 LINE L1 -2 6289 6005 1983 108 34 0 chr12 80771670 80771939 -63014516 + AluSq SINE Alu 24 301 -12 489 283 164 0 chr12 80772813 80772965 -63013490 + MER5A DNA MER1_type 13 189 0 949 127 66 146 chr12 80772965 80773342 -63013113 + LTR37B LTR ERV1 113 459 -9 1192 194 73 53 chr12 80776047 80776403 -63010052 + MLT1D LTR MaLR 12 374 -131 186 133 0 0 chr12 80776765 80776795 -63009660 + (CA)n Simple_repeat Simple_repeat 1 30 0 2119 202 140 6 chr12 80777011 80777511 -63008944 + MLT1F1 LTR MaLR 1 567 0 863 278 65 43 chr12 80777532 80778061 -63008394 + Charlie8 DNA MER1_type 1 532 -1885 948 210 10 20 chr12 80778472 80778672 -63007783 + MER58A DNA MER1_type 4 201 -23 212 270 34 34 chr12 80779250 80779339 -63007116 - MIR SINE MIR -6 256 168 1047 171 63 5 chr12 80779380 80779585 -63006870 + MER58A DNA MER1_type 1 217 -7 198 259 19 0 chr12 80780576 80780630 -63005825 - MIR3 SINE MIR -48 160 106 319 280 19 138 chr12 80780636 80780846 -63005609 - MIR SINE MIR -13 249 74 1717 168 28 7 chr12 80780846 80781023 -63005432 - AluJo SINE Alu -20 292 105 240 35 0 0 chr12 80781023 80781052 -63005403 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 1717 168 28 7 chr12 80781052 80781160 -63005295 - AluJo SINE Alu -207 105 1 319 280 19 138 chr12 80781160 80781210 -63005245 - MIR SINE MIR -188 74 20 499 236 97 18 chr12 80781362 80781527 -63004928 + MER5B DNA MER1_type 1 178 0 280 191 0 48 chr12 80782024 80782087 -63004368 - MIR SINE MIR -6 256 197 25 0 0 0 chr12 80783485 80783510 -63002945 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 80784339 80784360 -63002095 + (T)n Simple_repeat Simple_repeat 1 21 0 185 339 31 0 chr12 80784510 80784575 -63001880 - L2 LINE L2 -20 3293 3227 2417 146 34 7 chr12 80784743 80785160 -63001295 + MSTA LTR MaLR 1 428 0 229 269 213 28 chr12 80785252 80785339 -63001116 + MIR SINE MIR 2 72 -190 973 183 61 0 chr12 80785339 80785536 -63000919 + MER3 DNA MER1_type 1 209 0 229 269 213 28 chr12 80785536 80785589 -63000866 + MIR SINE MIR 72 168 -94 2262 90 0 10 chr12 80785594 80785894 -63000561 - AluSq SINE Alu -16 297 1 244 286 62 27 chr12 80786057 80786169 -63000286 + L2 LINE L2 3198 3313 0 470 186 0 0 chr12 80786316 80786402 -63000053 - AluS SINE Alu -226 86 1 200 260 40 0 chr12 80786608 80786658 -62999797 + MIR SINE MIR 201 252 -10 237 405 24 0 chr12 80786770 80786896 -62999559 + MIR SINE MIR 46 174 -88 181 229 0 0 chr12 80787784 80787819 -62998636 - MIR SINE MIR -145 117 83 192 375 68 0 chr12 80787943 80788031 -62998424 + L2 LINE L2 3157 3250 -22 2249 111 0 0 chr12 80788280 80788578 -62997877 + AluSg SINE Alu 1 298 -12 207 0 0 0 chr12 80788619 80788642 -62997813 + (CAA)n Simple_repeat Simple_repeat 2 24 0 762 258 48 5 chr12 80788711 80788920 -62997535 + MIR SINE MIR 12 229 -33 22 56 0 0 chr12 80989341 80989377 -62797078 + AT_rich Low_complexity Low_complexity 1 36 0 1350 136 41 0 chr12 80989747 80989968 -62796487 + MER30 DNA MER1_type 1 230 0 28 29 0 0 chr12 80990075 80990110 -62796345 + AT_rich Low_complexity Low_complexity 1 35 0 518 369 57 21 chr12 80990592 80990925 -62795530 + LTR16A LTR ERVL 56 400 -50 23 54 0 0 chr12 80991034 80991071 -62795384 + AT_rich Low_complexity Low_complexity 1 37 0 2915 112 4 11 chr12 80991076 80991539 -62794916 - L1PA4 LINE L1 -3 6152 5693 389 279 7 7 chr12 80992081 80992228 -62794227 - L1MA10 LINE L1 -14 6320 6174 570 230 37 0 chr12 80992244 80992379 -62794076 - L1MEc LINE L1 -4339 2057 1918 560 240 97 0 chr12 80992415 80992611 -62793844 - L1MEc LINE L1 -3451 2764 2550 1086 312 37 9 chr12 80992627 80993057 -62793398 - L1MEc LINE L1 -5920 476 35 189 74 0 0 chr12 80993646 80993673 -62792782 + (TG)n Simple_repeat Simple_repeat 1 27 0 625 172 70 0 chr12 80993798 80993926 -62792529 - L1MB1 LINE L1 -2 6166 6030 291 326 122 6 chr12 80996091 80996263 -62790192 - MIR SINE MIR -42 220 29 39 84 0 0 chr12 80996393 80996488 -62789967 + AT_rich Low_complexity Low_complexity 1 95 0 3465 173 16 10 chr12 80997187 80998224 -62788231 - L1P4 LINE L1 -342 5824 4787 255 159 0 0 chr12 80998223 80998267 -62788188 + L1P LINE L1 3737 3780 -2366 * 291 115 19 19 chr12 80998252 80998304 -62788151 + L1M1 LINE L1 5807 5858 -446 981 126 107 0 chr12 80998404 80998563 -62787892 - THE1B LTR MaLR -188 176 1 1764 274 70 28 chr12 80998569 80999590 -62786865 + L1M4 LINE L1 4229 5291 -855 795 255 67 4 chr12 80999766 81000033 -62786422 - L1MC3 LINE L1 -1369 6416 6133 970 264 113 36 chr12 81000097 81000713 -62785742 - L1MEc LINE L1 -4023 2209 1634 562 78 0 44 chr12 81000713 81000803 -62785652 - L1PA3 LINE L1 -1 6154 6069 970 264 113 36 chr12 81000803 81000941 -62785514 - L1MEc LINE L1 -4598 1634 1508 9302 31 1 3 chr12 81001284 81003172 -62783283 - L1PA3 LINE L1 -3 6152 4261 1471 94 5 0 chr12 81003297 81003489 -62782966 - AluSp SINE Alu -120 193 1 186 43 0 0 chr12 81003497 81003520 -62782935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1149 248 84 63 chr12 81003670 81004194 -62782261 - MLT1H LTR MaLR -2 547 13 257 68 23 0 chr12 81004269 81004313 -62782142 + (TA)n Simple_repeat Simple_repeat 2 46 0 2125 130 0 0 chr12 81004317 81004609 -62781846 - AluSx SINE Alu -20 292 1 270 303 210 23 chr12 81005160 81005546 -62780909 - L2 LINE L2 -910 2404 1947 22 0 0 0 chr12 81006874 81006896 -62779559 + AT_rich Low_complexity Low_complexity 1 22 0 222 313 12 36 chr12 81007013 81007096 -62779359 - L2 LINE L2 -6 3307 3227 695 264 16 21 chr12 81007102 81007295 -62779160 + MLT1A1 LTR MaLR 174 365 0 1743 116 8 8 chr12 81007504 81007771 -62778684 + AluY SINE Alu 30 296 -15 472 182 9 18 chr12 81007784 81007894 -62778561 + Ricksha DNA DNA 3135 3243 -8 202 283 20 20 chr12 81008152 81008251 -62778204 + (CATA)n Simple_repeat Simple_repeat 2 100 0 488 181 282 23 chr12 81008517 81008733 -62777722 - MER4C LTR ERV1 -18 447 176 1462 168 55 16 chr12 81008814 81009123 -62777332 - MER4A LTR ERV1 -341 323 3 220 267 174 0 chr12 81011373 81011459 -62774996 - MIR SINE MIR -114 148 48 438 276 24 32 chr12 81011627 81011750 -62774705 + MIR SINE MIR 23 144 -64 2244 110 0 0 chr12 81011867 81012166 -62774289 - AluSx SINE Alu -8 304 6 589 168 37 0 chr12 81012767 81012874 -62773581 + FLAM_A SINE Alu 22 132 -10 893 148 0 0 chr12 81013235 81013370 -62773085 - Tigger2 DNA MER2_type -2583 135 1 2138 107 7 3 chr12 81013756 81014054 -62772401 + AluSx SINE Alu 1 299 -13 4453 129 11 11 chr12 81014309 81015009 -62771446 + L1PA15 LINE L1 5464 6163 -2 35 24 0 0 chr12 81015319 81015361 -62771094 + AT_rich Low_complexity Low_complexity 1 42 0 950 134 0 0 chr12 81015361 81015488 -62770967 - FLAM_C SINE Alu -16 127 1 804 180 0 0 chr12 81015489 81015628 -62770827 + LTR24C LTR ERV1 497 635 0 2377 100 0 0 chr12 81015916 81016217 -62770238 + AluSq SINE Alu 1 301 -12 557 121 24 0 chr12 81016916 81016999 -62769456 - FAM SINE Alu -13 172 88 956 113 15 0 chr12 81017107 81017240 -62769215 + AluSg/x SINE Alu 161 295 -15 2381 131 23 56 chr12 81017467 81017837 -62768618 + Tigger2a DNA MER2_type 1 357 -2351 1946 135 6 41 chr12 81017837 81018155 -62768300 - AluSx SINE Alu -5 307 1 2381 131 23 56 chr12 81018155 81018211 -62768244 + Tigger2a DNA MER2_type 357 413 -21 208 326 174 0 chr12 81018285 81018371 -62768084 - L2 LINE L2 0 3313 3213 664 155 9 9 chr12 81018447 81018563 -62767892 + FLAM_C SINE Alu 1 116 -17 31 0 0 0 chr12 81018570 81018601 -62767854 + AT_rich Low_complexity Low_complexity 1 31 0 229 186 134 0 chr12 81018749 81018846 -62767609 + L1M4 LINE L1 5322 5431 -881 227 150 33 33 chr12 81019334 81019394 -62767061 + A-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr12 81019599 81019624 -62766831 + AT_rich Low_complexity Low_complexity 1 25 0 1114 152 6 0 chr12 81019624 81019788 -62766667 - AluSg/x SINE Alu -21 291 127 258 211 202 0 chr12 81019947 81020057 -62766398 + L1M4 LINE L1 5679 5810 -364 239 313 0 0 chr12 81020067 81020147 -62766308 - MIR SINE MIR 0 262 183 * 294 276 13 0 chr12 81020146 81020222 -62766233 + MIR SINE MIR 173 249 -13 318 200 15 0 chr12 81020298 81020363 -62766092 - MIR SINE MIR -108 154 89 324 94 0 0 chr12 81020995 81021048 -62765407 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 112 5 18 chr12 81021605 81021828 -62764627 + AluSg/x SINE Alu 69 288 -22 2181 129 0 3 chr12 81022696 81023005 -62763450 + AluSx SINE Alu 5 312 0 191 299 46 11 chr12 81023703 81023790 -62762665 + MIR SINE MIR 173 262 0 26 50 0 0 chr12 81023883 81023923 -62762532 + AT_rich Low_complexity Low_complexity 1 40 0 1262 284 46 79 chr12 81023931 81024537 -62761918 - MLT1K LTR MaLR -2 586 1 2542 66 0 0 chr12 81024662 81024963 -62761492 + AluY SINE Alu 1 301 -10 2004 178 7 67 chr12 81025116 81025537 -62760918 - MSTD LTR MaLR 0 396 1 259 266 96 32 chr12 81026343 81026437 -62760018 + MER5A DNA MER1_type 36 135 -54 * 391 211 121 117 chr12 81026433 81026656 -62759799 - MIR SINE MIR -32 230 7 31 0 0 0 chr12 81026702 81026733 -62759722 + AT_rich Low_complexity Low_complexity 1 31 0 675 142 52 32 chr12 81026785 81026940 -62759515 - L1MC3 LINE L1 0 7785 7628 245 376 16 8 chr12 81026941 81027066 -62759389 + MIR SINE MIR 32 157 -105 1746 141 40 7 chr12 81027074 81027350 -62759105 + AluSx SINE Alu 1 285 -27 2006 80 63 53 chr12 81028124 81028425 -62758030 + AluSq SINE Alu 5 308 -5 1723 139 61 41 chr12 81029304 81029599 -62756856 + AluJb SINE Alu 1 301 -11 428 52 0 0 chr12 81029626 81029684 -62756771 - AluSp/q SINE Alu -15 298 241 243 173 0 0 chr12 81029870 81029922 -62756533 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr12 81029973 81029994 -62756461 + AT_rich Low_complexity Low_complexity 1 21 0 3864 54 8 10 chr12 81029994 81030497 -62755958 - L1PA5 LINE L1 0 6154 5653 1077 159 56 98 chr12 81030500 81030859 -62755596 - L1MC5 LINE L1 -934 7027 6684 2779 147 25 8 chr12 81031824 81032558 -62753897 + L1PBb LINE L1 1241 1988 -4875 749 241 47 36 chr12 81032579 81032973 -62753482 + L1PBb LINE L1 2671 3118 -3744 366 218 371 0 chr12 81036297 81036421 -62750034 - MIR SINE MIR -2 260 91 400 303 36 48 chr12 81036938 81037103 -62749352 - MIR3 SINE MIR -11 197 35 207 0 0 0 chr12 81037909 81037932 -62748523 + (TGAG)n Simple_repeat Simple_repeat 3 25 0 785 293 31 39 chr12 81038146 81038501 -62747954 - L1ME3A LINE L1 -213 5951 5600 748 259 9 0 chr12 81041146 81041362 -62745093 + L1 LINE L1 2849 3066 -3080 2087 168 39 20 chr12 81041363 81041720 -62744735 + THE1B LTR MaLR 1 364 0 12304 96 8 3 chr12 81041720 81043292 -62743163 + THE1B-int LTR MaLR 1 1580 0 1464 146 182 49 chr12 81043302 81043610 -62742845 + THE1B LTR MaLR 16 364 0 4950 207 23 14 chr12 81043611 81044744 -62741711 + L1 LINE L1 3064 4206 -1940 12560 112 5 8 chr12 81044844 81046717 -62739738 + HERVH LTR ERV1 2127 3993 -3720 7165 117 21 7 chr12 81046700 81047787 -62738668 + HERVH LTR ERV1 3993 5286 -1805 * 2903 111 5 11 chr12 81047790 81048224 -62738231 + HERVH LTR ERV1 7283 7713 0 2314 114 119 24 chr12 81048224 81048635 -62737820 + LTR7 LTR ERV1 1 450 0 1433 144 0 5 chr12 81048637 81048845 -62737610 - AluJb SINE Alu -105 207 1 1037 171 32 95 chr12 81049249 81049397 -62737058 - Tigger2 DNA MER2_type 0 2718 2591 2070 139 0 0 chr12 81049397 81049692 -62736763 - AluSx SINE Alu -17 295 1 1037 171 32 95 chr12 81049692 81049795 -62736660 - Tigger2 DNA MER2_type -127 2591 2483 44 20 0 0 chr12 81050837 81050888 -62735567 + AT_rich Low_complexity Low_complexity 1 51 0 872 274 22 33 chr12 81051025 81051299 -62735156 + L2 LINE L2 576 846 -2468 1140 162 30 25 chr12 81051305 81051503 -62734952 - AluJo SINE Alu -23 289 91 923 253 175 28 chr12 81051509 81051676 -62734779 + L2 LINE L2 836 977 -2337 639 217 83 13 chr12 81051676 81051833 -62734622 + MER96 DNA MER1_type 5 172 -3 923 253 175 28 chr12 81051833 81052058 -62734397 + L2 LINE L2 977 1286 -2028 282 188 0 0 chr12 81052058 81052106 -62734349 + MER5A DNA MER1_type 1 48 -141 967 154 20 67 chr12 81052107 81052302 -62734153 - THE1C LTR MaLR 0 375 190 776 200 14 7 chr12 81052305 81052450 -62734005 + MER5A DNA MER1_type 43 188 -1 * 2819 271 141 28 chr12 81052450 81052557 -62733898 + L2 LINE L2 1278 1371 -1943 1740 165 26 26 chr12 81052557 81052860 -62733595 - AluJo SINE Alu -9 303 1 2819 271 141 28 chr12 81052860 81053413 -62733042 + L2 LINE L2 1371 1860 -1454 1521 153 55 126 chr12 81053413 81053817 -62732638 + THE1C LTR MaLR 1 375 0 2819 271 141 28 chr12 81053817 81054489 -62731966 + L2 LINE L2 1860 2762 -552 4398 130 13 5 chr12 81054591 81055220 -62731235 - MER41B LTR ERV1 0 635 2 333 274 147 0 chr12 81055221 81055316 -62731139 + L2 LINE L2 2942 3050 -263 690 284 99 55 chr12 81055392 81055868 -62730587 + MLT1J LTR MaLR 8 504 -7 31 44 0 0 chr12 81055922 81055967 -62730488 + AT_rich Low_complexity Low_complexity 1 45 0 3513 149 101 41 chr12 81056227 81056913 -62729542 + LTR8A LTR ERV1 1 727 0 1743 136 15 97 chr12 81057081 81057257 -62729198 - AluJb SINE Alu -9 303 165 2252 115 3 3 chr12 81057257 81057570 -62728885 - AluSq SINE Alu 0 313 1 1743 136 15 97 chr12 81057570 81057723 -62728732 - AluJb SINE Alu -147 165 1 415 248 30 0 chr12 81057820 81057921 -62728534 - Tigger1 DNA MER2_type -1 2417 2314 4139 185 83 5 chr12 81058029 81058888 -62727567 - L1MA7 LINE L1 -5 6286 5361 1335 196 5 5 chr12 81059775 81059999 -62726456 - MER58A DNA MER1_type 0 224 1 216 368 39 22 chr12 81060225 81060407 -62726048 - L2 LINE L2 -584 2730 2546 195 42 0 0 chr12 81060605 81060629 -62725826 + (TTCTC)n Simple_repeat Simple_repeat 2 25 0 352 320 0 69 chr12 81060629 81060804 -62725651 + L2 LINE L2 2148 2310 -1004 1646 208 75 41 chr12 81060854 81061214 -62725241 - LTR40c LTR ERVL -12 453 74 1995 148 0 0 chr12 81061214 81061511 -62724944 + AluSx SINE Alu 1 297 -15 1646 208 75 41 chr12 81061511 81061588 -62724867 - LTR40c LTR ERVL -391 74 1 258 300 79 36 chr12 81061588 81061728 -62724727 + L2 LINE L2 2337 2482 -832 811 201 0 7 chr12 81061761 81061900 -62724555 + FLAM_A SINE Alu 1 138 -4 1164 247 145 24 chr12 81061902 81062323 -62724132 - MLT1D LTR MaLR -33 472 1 255 270 0 14 chr12 81062380 81062454 -62724001 - L2 LINE L2 -1072 2242 2170 2275 95 7 0 chr12 81062505 81062801 -62723654 - AluSg SINE Alu -12 298 1 35 16 0 49 chr12 81062804 81062830 -62723625 + AT_rich Low_complexity Low_complexity 1 27 -31 807 137 8 8 chr12 81062830 81062947 -62723508 + FLAM_C SINE Alu 1 117 -16 35 16 0 49 chr12 81062947 81062981 -62723474 + AT_rich Low_complexity Low_complexity 27 58 0 388 308 69 0 chr12 81062981 81063111 -62723344 - MIR SINE MIR -76 186 48 2281 75 0 0 chr12 81063743 81064021 -62722434 + AluY SINE Alu 15 292 -19 351 0 0 0 chr12 81064021 81064060 -62722395 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 12860 75 24 2 chr12 81064062 81066495 -62719960 - L1PA3 LINE L1 -12 6143 3670 2223 137 14 20 chr12 81066802 81067159 -62719296 + THE1A LTR MaLR 1 355 0 11863 82 7 11 chr12 81067165 81068730 -62717725 + THE1A-int LTR MaLR 16 1574 -6 669 67 11 22 chr12 81068735 81068825 -62717630 + THE1A LTR MaLR 1 89 -275 * 2078 142 9 3 chr12 81068824 81069148 -62717307 + THE1A LTR MaLR 30 355 0 2157 136 0 7 chr12 81070233 81070542 -62715913 + AluSx SINE Alu 1 307 -5 363 315 60 13 chr12 81071187 81071336 -62715119 - MIR SINE MIR -104 158 3 406 172 203 23 chr12 81071354 81071482 -62714973 - MIR SINE MIR -11 251 101 263 292 115 8 chr12 81077070 81077200 -62709255 - MIR SINE MIR -52 210 67 236 67 0 0 chr12 81077833 81077863 -62708592 + MER41B LTR ERV1 2 31 -604 4539 68 22 2 chr12 81077879 81078421 -62708034 + MER41A LTR ERV1 2 554 0 228 250 42 0 chr12 81078429 81078477 -62707978 - L2 LINE L2 -13 3300 3251 1941 142 7 0 chr12 81078562 81078851 -62707604 - AluSx SINE Alu -21 291 1 298 236 170 9 chr12 81078857 81078963 -62707492 - MIR SINE MIR -122 140 18 1440 184 57 7 chr12 81078977 81079260 -62707195 + AluJo SINE Alu 1 297 -15 1928 128 3 3 chr12 81079367 81079649 -62706806 + AluSx SINE Alu 7 288 -24 198 111 19 37 chr12 81083739 81083793 -62702662 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 187 333 52 31 chr12 81083859 81083955 -62702500 + L2 LINE L2 3170 3267 -5 26 50 0 0 chr12 81084079 81084119 -62702336 + AT_rich Low_complexity Low_complexity 1 40 0 198 378 126 36 chr12 81084396 81084507 -62701948 + L2 LINE L2 3148 3268 -4 770 262 24 0 chr12 81085028 81085196 -62701259 - MLT1G1 LTR MaLR -423 172 1 236 228 101 25 chr12 81085585 81085664 -62700791 + L1MC/D LINE L1 5659 5743 -2065 1360 256 108 6 chr12 81086394 81086886 -62699569 + L2 LINE L2 2097 2638 -676 373 245 29 29 chr12 81087015 81087117 -62699338 - L1MC4 LINE L1 -144 7898 7797 555 315 54 0 chr12 81087117 81087301 -62699154 + L2 LINE L2 2692 2885 -429 777 301 71 64 chr12 81087304 81087371 -62699084 - MLT1I LTR MaLR 0 409 344 750 209 0 8 chr12 81087371 81087505 -62698950 + FLAM_A SINE Alu 1 133 0 777 301 71 64 chr12 81087505 81087829 -62698626 - MLT1I LTR MaLR -65 344 15 892 293 75 47 chr12 81087837 81088261 -62698194 + L2 LINE L2 2877 3312 -1 665 284 38 6 chr12 81089430 81089613 -62696842 + MIR SINE MIR 3 191 -71 2932 87 25 5 chr12 81089632 81090024 -62696431 + MLT2A1 LTR ERVL 1 400 -44 240 100 0 0 chr12 81090056 81090096 -62696359 + (TA)n Simple_repeat Simple_repeat 1 40 0 266 53 70 105 chr12 81090096 81090153 -62696302 + MLT2A1 LTR ERVL 399 453 0 193 214 0 24 chr12 81090154 81090196 -62696259 + L2 LINE L2 3251 3291 -22 1388 240 51 35 chr12 81090391 81090766 -62695689 + MLT1G1 LTR MaLR 37 417 -178 830 178 134 20 chr12 81091903 81092105 -62694350 - AluJb SINE Alu -26 286 62 459 277 46 15 chr12 81093379 81093509 -62692946 + MIR SINE MIR 3 136 -126 1429 193 140 23 chr12 81093518 81093831 -62692624 - MLT1F LTR MaLR -11 531 256 2165 102 10 0 chr12 81093831 81094125 -62692330 - AluSx SINE Alu -15 297 1 1429 193 140 23 chr12 81094125 81094137 -62692318 - MLT1F LTR MaLR -286 256 247 2156 122 0 3 chr12 81094137 81094440 -62692015 - AluSx SINE Alu -8 304 3 1429 193 140 23 chr12 81094440 81094596 -62691859 - MLT1F LTR MaLR -295 247 3 546 321 99 73 chr12 81094692 81095075 -62691380 - L2 LINE L2 -18 3254 2862 2816 90 3 3 chr12 81095098 81095453 -62691002 - THE1A LTR MaLR 0 355 1 871 244 18 5 chr12 81095535 81095755 -62690700 + L1ME1 LINE L1 5962 6184 0 189 0 0 0 chr12 81095945 81095966 -62690489 + (TG)n Simple_repeat Simple_repeat 2 22 0 236 213 0 0 chr12 81096430 81096477 -62689978 - L1ME LINE L1 -354 5808 5762 * 1109 242 100 30 chr12 81096474 81096813 -62689642 + L1ME3A LINE L1 5801 6163 -7 4109 185 83 6 chr12 81096997 81097857 -62688598 - L1MA7 LINE L1 -5 6286 5361 1173 212 14 5 chr12 81098744 81098966 -62687489 - MER58A DNA MER1_type 0 224 1 3376 162 15 28 chr12 81099145 81099793 -62686662 - HERVH LTR ERV1 -6273 1440 801 2019 177 54 25 chr12 81099853 81100299 -62686156 - HERVH LTR ERV1 -7254 459 1 2312 113 128 25 chr12 81100299 81100707 -62685748 - LTR7 LTR ERV1 0 450 1 669 154 0 18 chr12 81100707 81100817 -62685638 + AluJb SINE Alu 205 312 0 2054 126 7 17 chr12 81101572 81101874 -62684581 - AluSx SINE Alu -13 299 1 225 94 0 0 chr12 81101879 81101911 -62684544 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 323 286 77 144 chr12 81101917 81102333 -62684122 - L2 LINE L2 -23 3249 2862 473 302 17 11 chr12 81102389 81102568 -62683887 + MIR SINE MIR 83 262 0 375 303 28 21 chr12 81102803 81102945 -62683510 - L2 LINE L2 -452 2862 2720 3981 160 55 55 chr12 81103961 81104855 -62681600 + L1MA9 LINE L1 5397 6290 -22 278 341 14 29 chr12 81104882 81105020 -62681435 - MIR3 SINE MIR -48 160 25 209 260 26 13 chr12 81105087 81105164 -62681291 - MIR SINE MIR -6 256 179 180 200 0 0 chr12 81105166 81105206 -62681249 + (CA)n Simple_repeat Simple_repeat 1 40 0 224 207 35 11 chr12 81105230 81105317 -62681138 + CT-rich Low_complexity Low_complexity 4 92 0 311 311 106 48 chr12 81105817 81106196 -62680259 + L2 LINE L2 2373 2773 -541 308 264 56 42 chr12 81106937 81107081 -62679374 + MER5A DNA MER1_type 6 151 -38 420 191 0 0 chr12 81108218 81108302 -62678153 + CT-rich Low_complexity Low_complexity 3 86 0 843 256 80 4 chr12 81108940 81109214 -62677241 + MER46C DNA MER2_type 2 296 -42 223 299 136 52 chr12 81109279 81109433 -62677022 - MIR SINE MIR -59 203 37 194 299 58 11 chr12 81109445 81109532 -62676923 - MIR3 SINE MIR -35 173 93 267 285 139 56 chr12 81109703 81109847 -62676608 + L2 LINE L2 3117 3272 0 2291 102 0 0 chr12 81110390 81110683 -62675772 - AluSx SINE Alu -19 293 1 2322 148 77 5 chr12 81111226 81111533 -62674922 - Tigger2a DNA MER2_type -2275 433 89 198 0 0 0 chr12 81111533 81111555 -62674900 + (GGA)n Simple_repeat Simple_repeat 3 24 0 2322 148 77 5 chr12 81111555 81111651 -62674804 - Tigger2a DNA MER2_type -2619 89 1 1593 188 48 36 chr12 81112772 81113128 -62673327 - MLT1A1 LTR MaLR -5 360 1 388 247 72 82 chr12 81114400 81114594 -62671861 + MER117 DNA MER1_type 6 197 0 271 338 78 40 chr12 81114922 81115218 -62671237 - L2 LINE L2 -611 2703 2397 558 239 157 101 chr12 81115938 81116353 -62670102 - MLT1H1 LTR MaLR -39 516 79 390 328 105 16 chr12 81116759 81117006 -62669449 - L2 LINE L2 -470 2844 2576 1938 163 10 0 chr12 81118365 81118672 -62667783 + AluJo SINE Alu 1 310 -2 225 244 0 0 chr12 81118720 81118765 -62667690 - Zaphod DNA AcHobo -3985 46 2 23 0 0 0 chr12 81118879 81118902 -62667553 + AT_rich Low_complexity Low_complexity 1 23 0 263 117 10 19 chr12 81119206 81119414 -62667041 + AluSq SINE Alu 1 292 -9 207 179 36 18 chr12 81119596 81119652 -62666803 + GA-rich Low_complexity Low_complexity 4 60 0 201 233 0 17 chr12 81120522 81120582 -62665873 + L2 LINE L2 2989 3047 -225 974 232 77 37 chr12 81120824 81120982 -62665473 - L1M4 LINE L1 -763 5383 5233 1849 167 0 37 chr12 81120982 81121305 -62665150 - AluSx SINE Alu -1 311 1 974 232 77 37 chr12 81121305 81121521 -62664934 - L1M4 LINE L1 -913 5233 4994 1449 169 15 33 chr12 81121686 81121958 -62664497 + AluJb SINE Alu 1 267 -45 232 320 39 19 chr12 81122083 81122186 -62664269 + MIR SINE MIR 51 155 -107 320 343 189 0 chr12 81122201 81122376 -62664079 - MIR SINE MIR -24 238 31 209 281 0 0 chr12 81122442 81122506 -62663949 + MIR SINE MIR 186 249 -13 1154 295 80 31 chr12 81122769 81123295 -62663160 - L2 LINE L2 -2 3311 2758 410 260 75 27 chr12 81123297 81123443 -62663012 + MIR SINE MIR 2 154 -108 822 145 0 43 chr12 81123623 81123761 -62662694 - FLAM_C SINE Alu -1 132 1 375 280 0 20 chr12 81125566 81125666 -62660789 + MER46C DNA MER2_type 1 98 -240 511 328 79 32 chr12 81125781 81126159 -62660296 + Tigger4(Zombi) DNA MER2_type 426 821 -1910 * 1500 166 18 77 chr12 81126158 81126495 -62659960 - MLT2C1 LTR ERVL -80 317 1 29 28 0 0 chr12 81126625 81126661 -62659794 + AT_rich Low_complexity Low_complexity 1 36 0 334 155 27 80 chr12 81126661 81126848 -62659607 + (TTAA)n Simple_repeat Simple_repeat 3 179 0 542 340 74 51 chr12 81126898 81127102 -62659353 + Tigger4(Zombi) DNA MER2_type 895 1093 -1638 2279 106 0 0 chr12 81127102 81127395 -62659060 - AluSg SINE Alu -17 293 1 542 340 74 51 chr12 81127395 81128333 -62658122 + Tigger4(Zombi) DNA MER2_type 1093 2064 -667 36 0 0 0 chr12 81128339 81128375 -62658080 + AT_rich Low_complexity Low_complexity 1 36 0 1323 167 49 38 chr12 81128407 81128671 -62657784 - MLT2B1 LTR ERVL -253 267 1 397 109 78 0 chr12 81128671 81128726 -62657729 - MLT1A2 LTR MaLR -314 60 1 434 252 24 8 chr12 81128727 81128854 -62657601 + MER46C DNA MER2_type 209 337 -1 541 272 7 0 chr12 81129229 81129365 -62657090 + MIR SINE MIR 126 262 0 4437 145 35 38 chr12 81129410 81129645 -62656810 + L1 LINE L1 4190 4424 -1722 1853 171 20 0 chr12 81129645 81129944 -62656511 + AluJo SINE Alu 3 307 -5 4437 145 35 38 chr12 81129944 81130570 -62655885 + L1 LINE L1 4424 5048 -1098 298 233 0 68 chr12 81130950 81131023 -62655432 + MER21B LTR ERV1 178 245 -618 2232 89 4 0 chr12 81131042 81131322 -62655133 + AluSx SINE Alu 17 297 -15 586 161 0 0 chr12 81131329 81131422 -62655033 - MLT1A1 LTR MaLR 0 365 273 1702 122 0 0 chr12 81131422 81131651 -62654804 + AluSg/x SINE Alu 74 302 -10 1822 190 118 0 chr12 81131651 81132082 -62654373 + LTR54B LTR ERV1 15 496 -2 499 164 55 18 chr12 81132768 81132878 -62653577 + Charlie5 DNA MER1_type 2472 2585 -27 2058 119 34 3 chr12 81133657 81133950 -62652505 + AluSq SINE Alu 1 302 -11 911 139 23 0 chr12 81134294 81134423 -62652032 + AluJo/FLAM SINE Alu 2 133 -169 2335 86 10 3 chr12 81134424 81134727 -62651728 + AluY SINE Alu 1 305 -6 858 222 155 10 chr12 81134760 81134954 -62651501 - AluJo SINE Alu -84 228 7 39 22 0 0 chr12 81135000 81135046 -62651409 + AT_rich Low_complexity Low_complexity 1 46 0 351 0 0 0 chr12 81135107 81135146 -62651309 + (TG)n Simple_repeat Simple_repeat 2 40 0 1167 227 89 49 chr12 81135186 81135801 -62650654 - MER21B LTR ERV1 -111 752 55 406 303 18 9 chr12 81135971 81136080 -62650375 - MER5A DNA MER1_type -72 117 8 1276 184 9 27 chr12 81136372 81136595 -62649860 - MER20 DNA MER1_type 0 219 1 1320 142 13 62 chr12 81137927 81138153 -62648302 + MER1B DNA MER1_type 3 217 -80 1212 126 6 0 chr12 81138153 81138328 -62648127 - AluSq SINE Alu -17 296 121 876 85 69 31 chr12 81138328 81138458 -62647997 + MER1B DNA MER1_type 205 339 0 23 33 0 0 chr12 81138620 81138650 -62647805 + AT_rich Low_complexity Low_complexity 1 30 0 419 263 94 0 chr12 81138650 81138810 -62647645 - L1MC4a LINE L1 -1933 5875 5701 2224 107 10 0 chr12 81139011 81139300 -62647155 - AluSx SINE Alu -20 292 1 1796 111 100 4 chr12 81140373 81140643 -62645812 + AluSx SINE Alu 13 308 -4 353 302 40 32 chr12 81141330 81141456 -62644999 + L2 LINE L2 3137 3263 -9 233 264 0 0 chr12 81141498 81141551 -62644904 - MIR SINE MIR -9 253 201 505 247 123 0 chr12 81141593 81141747 -62644708 + L3 LINE CR1 1299 1471 -106 599 172 37 37 chr12 81142027 81142161 -62644294 - Charlie8 DNA MER1_type -2189 228 95 1298 63 0 0 chr12 81142191 81142349 -62644106 - L1PA6 LINE L1 0 6154 5997 207 0 0 0 chr12 81143238 81143261 -62643194 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 941 219 117 91 chr12 81143530 81143856 -62642599 - MER34C LTR ERV1 -23 562 181 1539 78 122 0 chr12 81143856 81144061 -62642394 + MER30 DNA MER1_type 1 230 0 941 219 117 91 chr12 81144061 81144240 -62642215 - MER34C LTR ERV1 -404 181 8 1658 225 50 69 chr12 81144273 81144413 -62642042 + LTR40a LTR ERVL 10 151 -368 2288 105 7 0 chr12 81144413 81144717 -62641738 - AluSq SINE Alu -7 306 1 1658 225 50 69 chr12 81144717 81145095 -62641360 + LTR40a LTR ERVL 151 518 -1 471 321 63 16 chr12 81145119 81145371 -62641084 + ERVL LTR ERVL 5000 5263 -501 403 322 90 8 chr12 81145407 81145673 -62640782 - LTR33A LTR ERVL -14 684 302 415 275 107 24 chr12 81146080 81146169 -62640286 + LTR33A LTR ERVL 78 158 -365 1374 210 31 86 chr12 81146169 81146555 -62639900 + MLT1A1 LTR MaLR 1 365 0 415 275 107 24 chr12 81146555 81146970 -62639485 + LTR33A LTR ERVL 158 513 -10 237 213 45 104 chr12 81147188 81147226 -62639229 - L1MDa LINE L1 -3890 2650 2611 1989 113 0 34 chr12 81147226 81147549 -62638906 - AluY SINE Alu 0 313 1 237 213 45 104 chr12 81147549 81147730 -62638725 - L1MDa LINE L1 -3929 2611 2443 2003 162 9 29 chr12 81148327 81148527 -62637928 + MER1B DNA MER1_type 1 193 -2519 2300 104 0 0 chr12 81148527 81148826 -62637629 - AluSx SINE Alu -13 299 1 2003 162 9 29 chr12 81148826 81148971 -62637484 + MER1B DNA MER1_type 193 339 0 317 270 183 0 chr12 81148990 81149105 -62637350 + L2 LINE L2 3176 3311 -2 1080 184 42 18 chr12 81149926 81150143 -62636312 - MLT1A1 LTR MaLR 0 365 144 181 57 57 0 chr12 81150158 81150193 -62636262 + (TA)n Simple_repeat Simple_repeat 1 37 0 309 231 57 31 chr12 81150228 81150379 -62636076 - L1MC4 LINE L1 -1323 6719 6614 182 114 0 29 chr12 81150381 81150416 -62636039 + (TA)n Simple_repeat Simple_repeat 1 34 0 342 255 85 9 chr12 81150416 81150522 -62635933 + L1MC4 LINE L1 6588 6701 -1341 280 132 0 0 chr12 81150522 81150560 -62635895 - Alu SINE Alu -262 38 1 757 140 6 117 chr12 81150564 81150735 -62635720 - MLT1A1 LTR MaLR -213 152 1 332 274 53 9 chr12 81151017 81151130 -62635325 - L3 LINE CR1 -628 949 832 3257 115 67 53 chr12 81151501 81152085 -62634370 - LTR14B LTR ERVK 0 608 17 1680 173 0 27 chr12 81152353 81152653 -62633802 - AluJo SINE Alu -20 292 1 1932 198 6 6 chr12 81152740 81153083 -62633372 + MLT1A1 LTR MaLR 23 365 0 2909 182 66 28 chr12 81153719 81154074 -62632381 + L1MD2 LINE L1 5679 6072 -287 2033 132 0 43 chr12 81154074 81154400 -62632055 + AluSx SINE Alu 1 312 0 2909 182 66 28 chr12 81154400 81154697 -62631758 + L1MD2 LINE L1 6072 6356 -3 1578 203 7 0 chr12 81154706 81154987 -62631468 + AluJo SINE Alu 1 283 -29 219 136 102 85 chr12 81155045 81155104 -62631351 - L2 LINE L2 -8 3264 3205 678 240 119 130 chr12 81155592 81155705 -62630750 + MLT1J1 LTR MaLR 34 147 -262 2114 115 96 3 chr12 81155705 81156017 -62630438 + MER7A DNA MER2_type 5 343 -3 678 240 119 130 chr12 81156017 81156259 -62630196 + MLT1J1 LTR MaLR 147 386 -23 399 21 0 0 chr12 81156480 81156528 -62629927 + (TG)n Simple_repeat Simple_repeat 2 49 0 1404 142 93 20 chr12 81156529 81156776 -62629679 - AluJo SINE Alu -26 286 22 1494 129 9 5 chr12 81156786 81157003 -62629452 - AluJb SINE Alu -10 302 85 317 273 146 9 chr12 81157325 81157435 -62629020 + L3 LINE CR1 1369 1493 -84 242 282 94 12 chr12 81157516 81157601 -62628854 - MER5A DNA MER1_type -1 188 97 21 57 0 0 chr12 81157760 81157795 -62628660 + AT_rich Low_complexity Low_complexity 1 35 0 827 147 7 63 chr12 81157804 81157912 -62628543 + AluJo SINE Alu 2 102 -210 2424 116 55 12 chr12 81157912 81158258 -62628197 + THE1B LTR MaLR 2 362 -2 827 147 7 63 chr12 81158258 81158292 -62628163 + AluJo SINE Alu 102 136 -176 342 213 33 107 chr12 81158292 81158414 -62628041 - L1M2 LINE L1 -4010 3097 2985 286 207 101 39 chr12 81158414 81158544 -62627911 - L1M2 LINE L1 -5236 1794 1204 21 36 0 0 chr12 81158553 81158581 -62627874 + AT_rich Low_complexity Low_complexity 1 28 0 650 284 0 6 chr12 81159149 81159311 -62627144 - MER63A DNA MER1_type 0 210 50 228 195 0 0 chr12 81159444 81159485 -62626970 + L1ME4a LINE L1 5562 5602 -519 392 280 172 18 chr12 81159526 81159805 -62626650 + L1ME4a LINE L1 5688 6009 -112 1890 230 56 66 chr12 81159836 81160550 -62625905 + L1M3e LINE L1 2 708 -6322 7366 167 50 145 chr12 81160564 81161462 -62624993 + L1MEc LINE L1 2148 3129 -3086 1542 138 74 22 chr12 81161462 81161771 -62624684 + AluJo SINE Alu 1 323 0 7366 167 50 145 chr12 81161771 81162399 -62624056 + L1MEc LINE L1 3129 3815 -2400 2257 88 0 29 chr12 81162399 81162706 -62623749 + AluY SINE Alu 1 298 -13 180 0 0 0 chr12 81162709 81162729 -62623726 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 7366 167 50 145 chr12 81162729 81162746 -62623709 + L1MEc LINE L1 3817 3834 -2381 831 175 8 0 chr12 81162746 81162872 -62623583 - FLAM_C SINE Alu -14 129 3 7366 167 50 145 chr12 81162872 81163266 -62623189 + L1MEc LINE L1 3834 4024 -2191 889 109 15 22 chr12 81163266 81163403 -62623052 + AluJb SINE Alu 1 136 -176 7366 167 50 145 chr12 81163403 81163795 -62622660 + L1MEc LINE L1 4024 4451 -1764 1661 169 0 11 chr12 81163795 81164062 -62622393 + AluJb SINE Alu 18 281 -31 865 154 15 0 chr12 81164062 81164192 -62622263 + AluJo/FRAM SINE Alu 160 291 -21 6108 146 50 34 chr12 81164203 81165604 -62620851 + L1MA9 LINE L1 4472 5849 -532 351 0 0 0 chr12 81165604 81165643 -62620812 + (TG)n Simple_repeat Simple_repeat 2 40 0 6108 146 50 34 chr12 81165643 81165969 -62620486 + L1MA9 LINE L1 5849 6168 -213 1661 141 63 0 chr12 81165969 81166239 -62620216 - AluJb SINE Alu -21 291 5 6108 146 50 34 chr12 81166239 81166266 -62620189 + L1MA9 LINE L1 6168 6193 -188 342 0 0 0 chr12 81166266 81166304 -62620151 + (CA)n Simple_repeat Simple_repeat 1 38 0 6108 146 50 34 chr12 81166304 81166429 -62620026 + L1MA9 LINE L1 6193 6381 0 839 275 72 79 chr12 81166696 81167099 -62619356 + MER115 DNA AcHobo 284 683 -10 498 263 22 83 chr12 81167133 81167162 -62619293 - L1MC4 LINE L1 -86 7956 7927 204 97 0 0 chr12 81167162 81167193 -62619262 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 498 263 22 83 chr12 81167193 81167242 -62619213 - L1MC4 LINE L1 -115 7927 7877 1938 162 3 0 chr12 81167242 81167544 -62618911 + AluJb SINE Alu 1 303 -9 498 263 22 83 chr12 81167544 81167742 -62618713 - L1MC4 LINE L1 -165 7877 7696 22 0 0 0 chr12 81168570 81168592 -62617863 + AT_rich Low_complexity Low_complexity 1 22 0 339 179 0 0 chr12 81168686 81168753 -62617702 + (CA)n Simple_repeat Simple_repeat 2 68 0 243 154 0 0 chr12 81168754 81168806 -62617649 - L1MC4 LINE L1 -1339 6703 6652 1991 125 4 14 chr12 81168813 81169094 -62617361 - AluSq SINE Alu -35 278 1 2308 112 0 0 chr12 81169098 81169402 -62617053 - AluSx SINE Alu -8 304 1 777 164 0 160 chr12 81170199 81170282 -62616173 - MER3 DNA MER1_type 0 209 114 1849 163 7 0 chr12 81170282 81170583 -62615872 + AluSx SINE Alu 1 303 -9 777 164 0 160 chr12 81170583 81170615 -62615840 - MER3 DNA MER1_type -95 114 79 2450 37 10 13 chr12 81170615 81170915 -62615540 + AluY SINE Alu 1 299 -12 777 164 0 160 chr12 81170915 81171030 -62615425 - MER3 DNA MER1_type -130 79 16 1149 176 110 56 chr12 81171030 81171593 -62614862 + LTR48 LTR ERV1 1 787 0 2380 102 3 0 chr12 81172757 81173062 -62613393 + AluSx SINE Alu 1 306 -6 576 187 72 22 chr12 81173089 81173228 -62613227 - MIR SINE MIR -1 261 116 2525 125 0 78 chr12 81173235 81173428 -62613027 + MLT1B LTR MaLR 1 145 -245 2205 125 3 0 chr12 81173428 81173740 -62612715 - AluSq SINE Alu 0 313 1 2525 125 0 78 chr12 81173740 81173969 -62612486 + MLT1B LTR MaLR 145 390 0 200 333 161 0 chr12 81173975 81174068 -62612387 - L2 LINE L2 -18 3295 3188 2921 133 63 55 chr12 81174075 81174196 -62612259 - MER34C LTR ERV1 0 585 466 1385 178 7 79 chr12 81174196 81174539 -62611916 - AluJo SINE Alu 0 321 1 2921 133 63 55 chr12 81174539 81174959 -62611496 - MER34C LTR ERV1 -119 466 39 780 296 76 28 chr12 81174962 81175398 -62611057 - L2 LINE L2 -127 3186 2737 4858 148 23 19 chr12 81175405 81176534 -62609921 - L1MC1 LINE L1 -19 6314 5221 249 238 16 16 chr12 81176535 81176598 -62609857 - L2 LINE L2 -566 2748 2686 2014 131 0 0 chr12 81176598 81176881 -62609574 + AluSx SINE Alu 1 283 -29 301 264 35 0 chr12 81176882 81176969 -62609486 - L1MC4 LINE L1 -1341 6701 6612 2678 151 31 2 chr12 81177067 81177483 -62608972 + MSTA LTR MaLR 1 428 0 3137 251 45 42 chr12 81177511 81177798 -62608657 - L2 LINE L2 -686 2628 2343 1582 170 129 81 chr12 81177798 81178280 -62608175 + MLT1D LTR MaLR 1 505 0 3137 251 45 42 chr12 81178280 81178976 -62607479 - L2 LINE L2 -971 2343 1642 232 121 0 0 chr12 81178978 81179011 -62607444 - MIR SINE MIR -147 115 83 895 220 46 46 chr12 81179011 81179270 -62607185 + MLT1H LTR MaLR 289 547 -2 369 0 0 0 chr12 81179467 81179508 -62606947 + (TG)n Simple_repeat Simple_repeat 2 42 0 1616 152 19 0 chr12 81179509 81179765 -62606690 - AluJb SINE Alu -51 261 1 1734 148 22 4 chr12 81180809 81181087 -62605368 - AluSx SINE Alu -17 295 13 2418 89 0 3 chr12 81181347 81181649 -62604806 - AluSx SINE Alu -11 301 1 204 204 93 0 chr12 81181652 81181706 -62604749 - MIR SINE MIR -14 248 190 1051 228 77 4 chr12 81182205 81182451 -62604004 - MLT1F1 LTR MaLR 0 567 304 723 216 26 7 chr12 81182457 81182610 -62603845 - MLT1F1 LTR MaLR -385 157 2 180 244 44 0 chr12 81182733 81182778 -62603677 - MIR3 SINE MIR -24 184 138 1090 198 234 19 chr12 81184373 81184741 -62601714 - L2 LINE L2 0 3313 2867 215 281 198 48 chr12 81184723 81184890 -62601565 + MIR SINE MIR 23 214 -48 * 240 320 0 0 chr12 81185002 81185080 -62601375 + MIR SINE MIR 179 256 -6 295 223 188 18 chr12 81185819 81185932 -62600523 + MIR SINE MIR 53 192 -62 208 188 21 21 chr12 81186397 81186445 -62600010 + CT-rich Low_complexity Low_complexity 2 49 0 457 250 143 16 chr12 81186784 81186938 -62599517 + MLT1I LTR MaLR 34 206 -203 297 246 159 32 chr12 81186978 81187104 -62599351 - MLT1H1 LTR MaLR -12 537 396 1572 170 10 104 chr12 81187124 81187518 -62598937 - MLT1A1 LTR MaLR -8 357 1 315 170 19 0 chr12 81187532 81187585 -62598870 - MLT1H1 LTR MaLR -202 353 300 700 137 13 4 chr12 81187616 81187733 -62598722 - MER34C LTR ERV1 0 585 426 258 32 0 0 chr12 81187733 81187764 -62598691 + (TG)n Simple_repeat Simple_repeat 1 31 0 935 133 46 0 chr12 81187766 81187917 -62598538 - MER34C LTR ERV1 -231 354 197 1612 176 3 27 chr12 81187920 81188221 -62598234 - L1PBa LINE L1 -5178 1685 1392 784 233 16 0 chr12 81188218 81188407 -62598048 - L1PBa LINE L1 -6666 197 6 * 1225 162 19 5 chr12 81188416 81188626 -62597829 - MER34C LTR ERV1 -371 214 2 723 271 11 0 chr12 81188718 81188899 -62597556 - MLT1H1 LTR MaLR -372 183 1 1727 167 103 32 chr12 81189293 81189641 -62596814 + MER93b LTR ERV1 1 373 0 1490 140 0 14 chr12 81190875 81191096 -62595359 + MER20 DNA MER1_type 2 219 0 242 276 134 60 chr12 81191263 81191480 -62594975 - L2 LINE L2 -1 3312 3080 225 265 61 71 chr12 81191940 81192038 -62594417 - L2 LINE L2 -219 3053 2957 193 288 0 41 chr12 81192611 81192684 -62593771 - L2 LINE L2 -956 2358 2289 355 200 27 13 chr12 81193172 81193247 -62593208 + MLT1D LTR MaLR 13 88 -417 816 203 109 127 chr12 81193292 81193789 -62592666 - LTR8A LTR ERV1 0 727 240 1280 233 32 43 chr12 81194114 81194461 -62591994 + MLT1D LTR MaLR 163 505 0 3722 148 61 5 chr12 81195240 81195829 -62590626 + LTR26E LTR ERV1 1 622 0 256 182 23 0 chr12 81195925 81195969 -62590486 + MER21B LTR ERV1 46 90 -773 2944 222 69 47 chr12 81195991 81196246 -62590209 + MER21B LTR ERV1 19 267 -596 4195 151 9 9 chr12 81196246 81196881 -62589574 + MER41B LTR ERV1 1 635 0 2944 222 69 47 chr12 81196881 81197396 -62589059 + MER21B LTR ERV1 267 806 -57 1138 164 22 0 chr12 81197443 81197626 -62588829 + MER58A DNA MER1_type 37 223 -1 1575 206 26 91 chr12 81197704 81197719 -62588736 - MLT1C LTR MaLR 0 467 453 2894 205 7 34 chr12 81197719 81198275 -62588180 - MER87 LTR ERV1 0 541 1 1575 206 26 91 chr12 81198275 81198331 -62588124 - MLT1C LTR MaLR -14 453 395 2183 124 3 13 chr12 81198331 81198646 -62587809 + AluSx SINE Alu 1 312 0 1575 206 26 91 chr12 81198646 81199068 -62587387 - MLT1C LTR MaLR -72 395 5 21 0 0 0 chr12 81199259 81199280 -62587175 + AT_rich Low_complexity Low_complexity 1 21 0 2208 113 3 0 chr12 81199291 81199582 -62586873 - AluSq SINE Alu -20 293 2 265 286 0 0 chr12 81200351 81200428 -62586027 + LTR33A LTR ERVL 446 522 -1 2176 118 3 10 chr12 81200481 81200785 -62585670 - AluSq SINE Alu -11 302 1 189 107 0 0 chr12 81200900 81200928 -62585527 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2355 207 40 113 chr12 81200945 81201195 -62585260 - MER21B LTR ERV1 -124 739 472 2069 105 4 7 chr12 81201195 81201471 -62584984 + AluSx SINE Alu 21 295 -17 2355 207 40 113 chr12 81201471 81201957 -62584498 - MER21B LTR ERV1 -391 472 61 2758 123 15 73 chr12 81201957 81202029 -62584426 - MSTA LTR MaLR 0 428 353 1928 175 10 0 chr12 81202029 81202338 -62584117 + AluJb SINE Alu 1 312 0 2758 123 15 73 chr12 81202338 81202719 -62583736 - MSTA LTR MaLR -75 353 1 2355 207 40 113 chr12 81202719 81202762 -62583693 - MER21B LTR ERV1 -802 61 16 817 163 0 43 chr12 81202762 81202903 -62583552 - FLAM_C SINE Alu -4 139 5 422 298 92 69 chr12 81202986 81203184 -62583271 + L1M4 LINE L1 3501 3712 -2434 1642 204 0 7 chr12 81203184 81203483 -62582972 + AluJo SINE Alu 1 297 -15 422 298 92 69 chr12 81203483 81203630 -62582825 + L1M4 LINE L1 3712 3854 -2292 291 156 0 111 chr12 81203639 81203729 -62582726 + L1M4 LINE L1 3887 3966 -2180 482 174 23 0 chr12 81203734 81203820 -62582635 - MER4D LTR ERV1 0 903 816 2692 176 14 8 chr12 81203842 81204325 -62582130 - MER4D LTR ERV1 -332 571 86 1843 142 11 3 chr12 81204340 81204622 -62581833 - AluJo SINE Alu -26 286 3 2307 209 32 34 chr12 81204875 81205067 -62581388 + MLT1F LTR MaLR 8 199 -343 1452 122 80 0 chr12 81205067 81205280 -62581175 - MER30 DNA MER1_type 0 230 1 2307 209 32 34 chr12 81205280 81205623 -62580832 + MLT1F LTR MaLR 199 542 0 480 272 130 48 chr12 81205885 81206577 -62579878 + L1M4 LINE L1 3715 4463 -1683 810 191 0 0 chr12 81206581 81206712 -62579743 + FLAM_C SINE Alu 1 131 -12 303 291 74 10 chr12 81206735 81206938 -62579517 + L1M4 LINE L1 4456 4671 -1475 273 267 37 59 chr12 81208471 81208606 -62577849 + L1M4 LINE L1 4696 4827 -1319 318 269 190 57 chr12 81208645 81208899 -62577556 + L1M4 LINE L1 4874 5093 -1053 1775 164 21 3 chr12 81208899 81209186 -62577269 - AluJb SINE Alu -20 292 1 318 269 190 57 chr12 81209186 81209336 -62577119 + L1M4 LINE L1 5093 5332 -814 665 171 19 0 chr12 81209337 81209442 -62577013 + U6 snRNA snRNA 1 107 0 24 32 0 0 chr12 81209504 81209535 -62576920 + AT_rich Low_complexity Low_complexity 1 31 0 2096 112 0 0 chr12 81209690 81209967 -62576488 + AluSg SINE Alu 30 306 -4 353 310 93 16 chr12 81210087 81210216 -62576239 + MIR SINE MIR 24 162 -100 3163 160 38 6 chr12 81210223 81210755 -62575700 + MER68 LTR ERV1 13 561 -1 326 273 71 0 chr12 81211279 81211378 -62575077 + MIR SINE MIR 157 262 0 250 254 88 53 chr12 81211402 81211516 -62574939 - L2 LINE L2 -49 3264 3147 2065 122 7 3 chr12 81211517 81211811 -62574644 + AluSx SINE Alu 1 295 -17 1856 253 25 47 chr12 81211839 81212599 -62573856 - L2 LINE L2 -134 3179 2444 2085 104 30 7 chr12 81212662 81212961 -62573494 - AluSx SINE Alu -6 306 1 876 133 147 99 chr12 81213580 81213791 -62572664 - AluJo SINE Alu -7 305 85 2260 109 0 3 chr12 81215566 81215868 -62570587 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr12 81215868 81215888 -62570567 + (GA)n Simple_repeat Simple_repeat 1 20 0 186 167 0 0 chr12 81215891 81215927 -62570528 + G-rich Low_complexity Low_complexity 3 38 0 605 202 65 42 chr12 81216956 81217124 -62569331 + MER5B DNA MER1_type 5 176 -2 471 253 76 117 chr12 81218136 81218545 -62567910 - MER34 LTR ERV1 0 542 161 2009 103 57 0 chr12 81218545 81218827 -62567628 + AluSx SINE Alu 1 298 -14 471 253 76 117 chr12 81218827 81218982 -62567473 - MER34 LTR ERV1 -381 161 1 1338 234 30 28 chr12 81219058 81219267 -62567188 + MER31B LTR ERV1 1 213 -253 1021 198 12 0 chr12 81219267 81219439 -62567016 - FAM SINE Alu 0 175 2 1338 234 30 28 chr12 81219439 81219592 -62566863 + MER31B LTR ERV1 213 364 -102 1655 177 38 3 chr12 81219594 81219921 -62566534 + AluJo SINE Alu 3 312 0 868 156 23 0 chr12 81219931 81220104 -62566351 + GA-rich Low_complexity Low_complexity 2 178 0 467 184 32 32 chr12 81220104 81220229 -62566226 + MER31A LTR ERV1 353 477 -8 504 233 75 0 chr12 81220532 81220652 -62565803 - LTR16A1 LTR ERVL 0 457 329 296 255 20 29 chr12 81221686 81221788 -62564667 - MIR3 SINE MIR 0 208 108 303 267 82 123 chr12 81221801 81221996 -62564459 + Charlie8 DNA MER1_type 7 193 -2224 1054 168 0 0 chr12 81222080 81222241 -62564214 - FRAM SINE Alu -4 162 2 577 249 51 28 chr12 81223525 81223702 -62562753 - MIR SINE MIR 0 262 82 242 253 13 27 chr12 81223805 81223880 -62562575 + MLT1J LTR MaLR 1 74 -437 284 184 53 26 chr12 81224020 81224096 -62562359 - MIR SINE MIR 0 262 185 33 25 0 0 chr12 81224235 81224275 -62562180 + AT_rich Low_complexity Low_complexity 1 40 0 2305 101 0 0 chr12 81224365 81224663 -62561792 - AluSx SINE Alu -14 298 1 287 217 33 0 chr12 81224664 81224724 -62561731 + L1ME LINE L1 5601 5662 -459 1504 126 142 8 chr12 81224777 81225023 -62561432 + AluSg1 SINE Alu 1 279 -30 372 104 0 0 chr12 81225026 81225093 -62561362 + (CATA)n Simple_repeat Simple_repeat 2 68 0 186 71 0 0 chr12 81225170 81225198 -62561257 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1807 166 27 0 chr12 81225397 81225698 -62560757 - AluJo SINE Alu -2 310 2 3242 186 37 91 chr12 81225730 81226378 -62560077 + MER97a DNA MER1_type 2 585 -309 2222 103 0 26 chr12 81226378 81226688 -62559767 + AluSx SINE Alu 3 304 -8 3242 186 37 91 chr12 81226688 81226983 -62559472 + MER97a DNA MER1_type 585 894 0 2217 113 0 10 chr12 81227267 81227577 -62558878 - AluSp SINE Alu -6 307 1 332 226 16 0 chr12 81227779 81227841 -62558614 - L2 LINE L2 -47 3225 3163 268 336 131 30 chr12 81227932 81228047 -62558408 + L2 LINE L2 2746 2848 -424 2283 94 13 0 chr12 81228047 81228345 -62558110 - AluSc SINE Alu -7 302 1 268 336 131 30 chr12 81228345 81228540 -62557915 + L2 LINE L2 2848 3101 -171 32 0 0 0 chr12 81229103 81229135 -62557320 + AT_rich Low_complexity Low_complexity 1 32 0 336 243 40 86 chr12 81230470 81230622 -62555833 + MIR SINE MIR 118 262 0 27123 118 14 74 chr12 81230790 81235712 -62550743 + L1PA7 LINE L1 12 4638 -1508 1325 69 0 0 chr12 81235712 81235871 -62550584 + L1PA3 LINE L1 5997 6155 0 7482 52 8 2 chr12 81235874 81237383 -62549072 + L1PA7 LINE L1 4630 6143 -11 1109 253 102 24 chr12 81238196 81238377 -62548078 + L1ME3A LINE L1 4834 4999 -1171 2055 143 3 0 chr12 81238377 81238678 -62547777 + AluSx SINE Alu 6 307 -5 1109 253 102 24 chr12 81238678 81238900 -62547555 + L1ME3A LINE L1 4999 5202 -968 2481 67 0 0 chr12 81238900 81239199 -62547256 - AluSp SINE Alu -14 299 1 1109 253 102 24 chr12 81239199 81239567 -62546888 + L1ME3A LINE L1 5202 5676 -494 207 0 0 0 chr12 81239567 81239590 -62546865 + (TA)n Simple_repeat Simple_repeat 2 24 0 1109 253 102 24 chr12 81239590 81239629 -62546826 + L1ME3A LINE L1 5676 5711 -459 426 276 35 35 chr12 81239837 81240025 -62546430 - LTR43 LTR ERV1 -208 471 132 1636 247 27 18 chr12 81240178 81240623 -62545832 + L1ME3A LINE L1 5717 6165 -5 296 255 137 0 chr12 81240735 81240837 -62545618 + L1ME4a LINE L1 5968 6083 -38 348 312 38 76 chr12 81241092 81241329 -62545126 - L2 LINE L2 -209 3063 2836 355 232 203 22 chr12 81242485 81242623 -62543832 + MIR SINE MIR 41 203 -59 252 110 40 50 chr12 81242634 81242734 -62543721 + (TA)n Simple_repeat Simple_repeat 1 99 0 338 109 0 9 chr12 81242793 81242855 -62543600 + MLT2D LTR ERVL 323 480 -40 1598 140 23 49 chr12 81242923 81243222 -62543233 - MLT2D LTR ERVL -20 534 113 252 0 0 0 chr12 81243222 81243250 -62543205 + (TG)n Simple_repeat Simple_repeat 1 28 0 1499 175 49 0 chr12 81243253 81243516 -62542939 - AluJb SINE Alu -36 276 1 198 280 0 110 chr12 81243610 81243710 -62542745 - MIR3 SINE MIR -5 203 115 4740 82 4 15 chr12 81244255 81244936 -62541519 + L1PA7 LINE L1 5478 6151 -3 5608 206 104 51 chr12 81244938 81245248 -62541207 - L1M4 LINE L1 -1289 5355 5063 1393 165 90 8 chr12 81245248 81245515 -62540940 - AluJb SINE Alu -23 289 1 5608 206 104 51 chr12 81245515 81247060 -62539395 - L1M4 LINE L1 -1581 5063 3602 870 159 0 0 chr12 81247060 81247209 -62539246 - AluSg/x SINE Alu 0 310 162 5608 206 104 51 chr12 81247209 81247503 -62538952 - L1M4 LINE L1 -3042 3602 3325 258 32 0 0 chr12 81247503 81247534 -62538921 + (TG)n Simple_repeat Simple_repeat 1 31 0 5608 206 104 51 chr12 81247534 81249042 -62537413 - L1M4 LINE L1 -3319 3325 1262 316 269 126 0 chr12 81249169 81249336 -62537119 - L1M4 LINE L1 -6291 251 64 21 0 0 0 chr12 81249651 81249672 -62536783 + AT_rich Low_complexity Low_complexity 1 21 0 190 351 0 18 chr12 81250402 81250459 -62535996 - MER5A DNA MER1_type -103 86 31 306 273 15 91 chr12 81250506 81250638 -62535817 - MER5B DNA MER1_type -56 122 1 296 246 132 13 chr12 81250736 81250879 -62535576 + MIR SINE MIR 8 166 -42 311 183 25 50 chr12 81252363 81252483 -62533972 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 1453 161 100 23 chr12 81252483 81252744 -62533711 - AluJo SINE Alu -29 283 3 654 217 86 124 chr12 81253128 81253395 -62533060 + MIR SINE MIR 3 259 -3 1975 257 56 21 chr12 81254529 81255146 -62531309 + MLT1G LTR MaLR 1 542 0 1329 234 74 36 chr12 81255815 81256179 -62530276 - MER82 DNA MER2_type -6 647 270 1387 179 19 10 chr12 81256350 81256657 -62529798 - AluSx SINE Alu -2 310 1 813 173 8 0 chr12 81256681 81256808 -62529647 - FLAM_C SINE Alu -4 129 2 14021 130 11 31 chr12 81256906 81258063 -62528392 - Tigger1 DNA MER2_type -1 2417 1238 767 204 0 0 chr12 81258063 81258195 -62528260 + FLAM_C SINE Alu 1 132 -1 14021 130 11 31 chr12 81258195 81259269 -62527186 - Tigger1 DNA MER2_type -1180 1238 144 1785 174 7 7 chr12 81259269 81259585 -62526870 + AluJb SINE Alu 3 318 0 14021 130 11 31 chr12 81259585 81259742 -62526713 - Tigger1 DNA MER2_type -2274 144 76 2308 110 3 0 chr12 81259742 81260051 -62526404 - AluSp SINE Alu -3 310 1 14021 130 11 31 chr12 81260051 81260126 -62526329 - Tigger1 DNA MER2_type -2342 76 1 878 206 25 76 chr12 81261135 81261451 -62525004 + LTR37A LTR ERV1 51 350 -76 2498 77 0 0 chr12 81261451 81261762 -62524693 + AluY SINE Alu 1 311 0 2530 37 3 0 chr12 81262824 81263119 -62523336 + AluY SINE Alu 1 296 -15 549 305 108 5 chr12 81263669 81263882 -62522573 + MIR SINE MIR 2 236 -26 33 25 0 0 chr12 81263942 81263982 -62522473 + AT_rich Low_complexity Low_complexity 1 40 0 2092 114 0 4 chr12 81264140 81264420 -62522035 + AluSx SINE Alu 2 280 -32 1082 46 34 11 chr12 81264422 81264597 -62521858 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 453 116 0 0 chr12 81264597 81264666 -62521789 + (GGGA)n Simple_repeat Simple_repeat 1 69 0 432 0 0 0 chr12 81264757 81264805 -62521650 + (TG)n Simple_repeat Simple_repeat 1 48 0 203 338 0 0 chr12 81264819 81264893 -62521562 + (TG)n Simple_repeat Simple_repeat 2 75 0 267 306 0 38 chr12 81265544 81265692 -62520763 + GA-rich Low_complexity Low_complexity 2 143 -34 866 132 9 162 chr12 81265692 81265920 -62520535 + 7SK RNA RNA 1 193 0 267 306 0 38 chr12 81265920 81265954 -62520501 + GA-rich Low_complexity Low_complexity 143 177 0 229 363 0 0 chr12 81266070 81266179 -62520276 + GA-rich Low_complexity Low_complexity 1 109 0 734 280 54 29 chr12 81266334 81266573 -62519882 - MIR SINE MIR -14 248 4 191 111 0 28 chr12 81267182 81267218 -62519237 + (TTCTCC)n Simple_repeat Simple_repeat 5 39 0 1185 199 42 0 chr12 81267235 81267566 -62518889 + L1M4 LINE L1 4978 5322 -824 348 314 100 30 chr12 81268553 81268741 -62517714 - MIR SINE MIR -39 223 17 495 247 121 43 chr12 81269155 81269386 -62517069 + MIR SINE MIR 1 249 -13 251 102 0 20 chr12 81269389 81269438 -62517017 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 203 147 0 0 chr12 81269498 81269532 -62516923 + (CAT)n Simple_repeat Simple_repeat 3 36 0 40734 36 25 2 chr12 81269562 81274916 -62511539 + L1P1 LINE L1 1 5476 -679 674 122 10 0 chr12 81275017 81275115 -62511340 - AluSc SINE Alu -137 172 74 519 160 11 0 chr12 81275115 81275209 -62511246 + MLT1A1 LTR MaLR 271 365 0 2139 102 10 7 chr12 81275216 81275509 -62510946 - AluSq SINE Alu -15 298 5 276 233 0 68 chr12 81275517 81275590 -62510865 - MER21B LTR ERV1 -618 245 178 1105 207 27 4 chr12 81275992 81276248 -62510207 - L1 LINE L1 -1120 5026 4765 203 177 16 0 chr12 81276347 81276409 -62510046 + (CACCC)n Simple_repeat Simple_repeat 3 65 0 758 284 147 13 chr12 81276518 81277425 -62509030 + L1ME3A LINE L1 4796 5830 -340 1384 239 49 29 chr12 81278054 81278229 -62508226 + L1M4 LINE L1 4362 4532 -1614 1604 146 86 4 chr12 81278229 81278496 -62507959 + AluJb SINE Alu 1 289 -23 1384 239 49 29 chr12 81278496 81278806 -62507649 + L1M4 LINE L1 4532 4857 -1289 6967 53 34 2 chr12 81278808 81280587 -62505868 - L1PA7 LINE L1 -3 6151 4339 2479 181 14 34 chr12 81280828 81281451 -62505004 - HERVH LTR ERV1 -6302 1411 801 1814 185 49 25 chr12 81281511 81281959 -62504496 - HERVH LTR ERV1 -7254 459 1 2095 119 117 24 chr12 81281959 81282371 -62504084 - LTR7 LTR ERV1 0 450 1 2665 110 5 14 chr12 81282371 81282806 -62503649 - HERVH LTR ERV1 0 7713 7283 6570 112 21 6 chr12 81282811 81283845 -62502610 - HERVH LTR ERV1 -2699 5014 3993 500 261 110 91 chr12 81284070 81284539 -62501916 + L1M4 LINE L1 3047 3506 -2640 2391 78 7 10 chr12 81284539 81284847 -62501608 + AluSx SINE Alu 5 311 -1 500 261 110 91 chr12 81284847 81285307 -62501148 + L1M4 LINE L1 3506 3993 -2153 1795 181 3 10 chr12 81285329 81285643 -62500812 + AluJb SINE Alu 1 312 0 183 224 0 0 chr12 81285656 81285732 -62500723 + (TA)n Simple_repeat Simple_repeat 2 77 0 4790 154 37 52 chr12 81286030 81287718 -62498737 - L1MA9 LINE L1 -1 6311 4640 1023 186 28 67 chr12 81288049 81288302 -62498153 - MER82 DNA MER2_type -410 243 1 514 193 23 80 chr12 81288334 81288510 -62497945 + MER103 DNA DNA 1 166 0 6066 65 11 0 chr12 81288914 81289735 -62496720 - L1PA7 LINE L1 -25 6129 5302 739 260 85 8 chr12 81289849 81290084 -62496371 + MIR SINE MIR 9 261 -1 25 31 0 0 chr12 81290183 81290215 -62496240 + AT_rich Low_complexity Low_complexity 1 32 0 191 377 22 7 chr12 81290727 81290865 -62495590 + L2 LINE L2 2282 2421 -893 1813 104 6 82 chr12 81290887 81291203 -62495252 - AluSx SINE Alu -20 292 1 22 0 0 0 chr12 81291385 81291407 -62495048 + AT_rich Low_complexity Low_complexity 1 22 0 1788 232 70 17 chr12 81291494 81292033 -62494422 - L1ME1 LINE L1 -5 6441 5874 3609 237 73 37 chr12 81292053 81292536 -62493919 - L1ME1 LINE L1 -1282 5144 4680 808 150 47 0 chr12 81292536 81292663 -62493792 + FLAM_A SINE Alu 1 133 0 3609 237 73 37 chr12 81292663 81293603 -62492852 - L1ME1 LINE L1 -1746 4680 3670 316 153 61 112 chr12 81293589 81293687 -62492768 - L1ME1 LINE L1 -3622 2804 2712 * 350 278 71 44 chr12 81294088 81294384 -62492071 - L1ME1 LINE L1 -3771 2692 2331 301 340 35 30 chr12 81294430 81294627 -62491828 - L1ME1 LINE L1 -4322 2285 2088 307 267 128 61 chr12 81294743 81294923 -62491532 - L1ME1 LINE L1 -4863 1563 1372 399 294 71 69 chr12 81295006 81295496 -62490959 - L1ME1 LINE L1 -5009 1407 917 2153 102 37 0 chr12 81295516 81295811 -62490644 - AluSp SINE Alu -7 306 1 222 296 0 0 chr12 81295922 81295976 -62490479 - MIR SINE MIR -175 87 34 2008 139 3 3 chr12 81296055 81296358 -62490097 + AluSx SINE Alu 1 303 -9 1946 152 3 0 chr12 81296462 81296764 -62489691 + AluSx SINE Alu 6 308 -4 417 271 47 31 chr12 81296976 81297105 -62489350 + MIR SINE MIR 31 161 -101 223 303 91 30 chr12 81297343 81297442 -62489013 + MIR3 SINE MIR 64 168 -40 21 57 0 0 chr12 81298719 81298754 -62487701 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 81301018 81301040 -62485415 + AT_rich Low_complexity Low_complexity 1 22 0 2112 124 7 10 chr12 81301495 81301802 -62484653 - AluSx SINE Alu -5 307 2 536 278 120 0 chr12 81302064 81302255 -62484200 + MIR SINE MIR 7 220 -42 596 257 49 59 chr12 81302258 81302562 -62483893 + HAL1 LINE L1 8 308 -2199 * 924 209 75 52 chr12 81302559 81302780 -62483675 + HAL1 LINE L1 1478 1709 -798 564 217 85 16 chr12 81302780 81302969 -62483486 + MER105 DNA DNA 2 203 -1 924 209 75 52 chr12 81302969 81303053 -62483402 + HAL1 LINE L1 1709 1790 -717 1005 216 125 33 chr12 81303538 81303917 -62482538 + MER57A LTR ERV1 19 403 0 649 252 73 45 chr12 81305327 81305573 -62480882 - MER112 DNA MER1_type -7 253 1 25 0 0 0 chr12 81305608 81305633 -62480822 + AT_rich Low_complexity Low_complexity 1 25 0 2736 16 3 0 chr12 81306781 81307089 -62479366 + AluYb8 SINE Alu 1 309 -9 314 307 119 0 chr12 81307120 81307221 -62479234 - L2 LINE L2 -6 3266 3154 24 0 0 0 chr12 81307426 81307450 -62479005 + AT_rich Low_complexity Low_complexity 1 24 0 297 318 104 7 chr12 81307452 81307606 -62478849 - MIR SINE MIR -49 213 45 369 347 81 28 chr12 81307730 81308135 -62478320 + L1M3a LINE L1 1836 2314 -5172 1238 254 24 6 chr12 81308149 81308479 -62477976 + L1M3a LINE L1 2244 2579 -4907 2638 237 96 47 chr12 81308498 81310124 -62476331 + L1M3a LINE L1 2791 4521 -3044 1611 203 20 3 chr12 81310124 81310425 -62476030 + AluJo SINE Alu 1 306 -6 2638 237 96 47 chr12 81310425 81310650 -62475805 + L1M3a LINE L1 4521 4734 -2831 3800 189 78 0 chr12 81310673 81311512 -62474943 + L1M3a LINE L1 5152 6055 -1510 887 115 8 0 chr12 81311513 81311635 -62474820 + AluSg SINE Alu 1 123 -187 741 235 101 66 chr12 81311740 81311941 -62474514 - L1MEc LINE L1 -3670 2545 2353 2192 127 0 0 chr12 81311941 81312249 -62474206 - AluSq SINE Alu -5 308 1 741 235 101 66 chr12 81312249 81312550 -62473905 - L1MEc LINE L1 -3862 2353 2085 984 160 97 11 chr12 81312592 81312767 -62473688 - MER20 DNA MER1_type -1 218 29 611 308 66 0 chr12 81312773 81312815 -62473640 - L1MEc LINE L1 -4330 2066 2028 2007 84 0 0 chr12 81312815 81313066 -62473389 + AluSq SINE Alu 1 251 -62 611 308 66 0 chr12 81313066 81313312 -62473143 - L1MEc LINE L1 -4368 2028 1759 22 35 0 0 chr12 81313871 81313900 -62472555 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr12 81314589 81314630 -62471825 + AT_rich Low_complexity Low_complexity 1 41 0 1410 215 165 33 chr12 81314724 81315203 -62471252 + MLT1F LTR MaLR 1 542 0 1513 211 46 175 chr12 81317140 81317963 -62468492 + Charlie6 DNA MER1_type 1 717 -2783 28 0 0 0 chr12 81318041 81318069 -62468386 + AT_rich Low_complexity Low_complexity 1 28 0 466 269 119 23 chr12 81318116 81318335 -62468120 - L1MC4a LINE L1 -1749 6059 5820 1021 267 36 16 chr12 81318340 81318643 -62467812 - L1MC4a LINE L1 -2021 5787 5479 356 291 64 50 chr12 81318785 81319005 -62467450 - L1MC4a LINE L1 -2331 5477 5255 914 169 0 6 chr12 81320938 81321098 -62465357 - MIR SINE MIR 0 262 104 972 190 0 60 chr12 81321769 81321985 -62464470 + AluJo SINE Alu 87 289 -23 203 339 40 45 chr12 81322429 81322606 -62463849 - L2 LINE L2 -225 3047 2872 21 57 0 0 chr12 81323462 81323497 -62462958 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 81323619 81323640 -62462815 + AT_rich Low_complexity Low_complexity 1 21 0 2571 49 0 3 chr12 81323644 81323952 -62462503 + AluY SINE Alu 1 307 -4 2141 111 7 0 chr12 81323957 81324264 -62462191 + AluSc SINE Alu 1 309 0 369 259 288 0 chr12 81325836 81326006 -62460449 + MIR SINE MIR 34 252 -10 21 36 0 0 chr12 81326115 81326143 -62460312 + AT_rich Low_complexity Low_complexity 1 28 0 364 149 0 23 chr12 81326211 81326298 -62460157 + (TA)n Simple_repeat Simple_repeat 2 86 0 1531 179 39 14 chr12 81326692 81326972 -62459483 + AluJo SINE Alu 1 287 -25 1964 148 0 10 chr12 81327033 81327330 -62459125 - AluJb SINE Alu -18 294 1 26 0 0 0 chr12 81327405 81327431 -62459024 + AT_rich Low_complexity Low_complexity 1 26 0 226 275 58 0 chr12 81328500 81328569 -62457886 + L2 LINE L2 3234 3306 -7 3929 82 34 0 chr12 81330240 81330798 -62455657 - L1PA13 LINE L1 -15 6148 5572 1877 128 38 3 chr12 81331008 81331296 -62455159 - AluSx SINE Alu -14 298 1 1034 232 29 25 chr12 81331618 81331859 -62454596 - MIR SINE MIR -19 243 2 21 0 0 0 chr12 81331863 81331884 -62454571 + AT_rich Low_complexity Low_complexity 1 21 0 361 283 112 40 chr12 81333674 81333826 -62452629 - MIR SINE MIR -53 209 47 2531 108 39 151 chr12 81334734 81335223 -62451232 + Tigger2 DNA MER2_type 1 2718 0 493 299 62 6 chr12 81335235 81335412 -62451043 - MIR SINE MIR -73 189 3 1880 172 0 0 chr12 81335488 81335778 -62450677 + AluJo SINE Alu 1 290 -22 567 212 96 7 chr12 81336269 81336415 -62450040 + MIR SINE MIR 70 228 -34 1875 144 14 0 chr12 81336940 81337224 -62449231 - AluJo SINE Alu -24 288 1 1712 161 18 4 chr12 81337578 81337858 -62448597 - AluJo SINE Alu -27 285 2 420 257 154 7 chr12 81338162 81338298 -62448157 + MIR SINE MIR 33 188 -74 721 176 0 22 chr12 81338336 81338472 -62447983 + FLAM_A SINE Alu 1 133 0 2441 60 3 3 chr12 81338493 81338794 -62447661 + AluY SINE Alu 1 301 -10 922 209 48 0 chr12 81338880 81339067 -62447388 + MER3 DNA MER1_type 1 196 -13 1444 218 103 30 chr12 81339408 81339911 -62446544 + MER39 LTR ERV1 1 576 -9 330 245 19 66 chr12 81341369 81341475 -62444980 + MIR SINE MIR 161 261 -1 598 231 141 12 chr12 81342122 81342750 -62443705 + L1ME3 LINE L1 5432 6160 -2 2191 118 0 7 chr12 81393599 81393904 -62392551 - AluSg SINE Alu -7 303 1 2092 118 10 0 chr12 81394276 81394572 -62391883 + AluSg SINE Alu 2 300 -10 22 0 0 0 chr12 81395060 81395082 -62391373 + AT_rich Low_complexity Low_complexity 1 22 0 2106 122 3 7 chr12 81395300 81395595 -62390860 - AluSx SINE Alu -18 294 1 2239 94 0 3 chr12 81395609 81395896 -62390559 - AluSg SINE Alu -24 286 1 2431 75 3 0 chr12 81396250 81396544 -62389911 - AluSp SINE Alu -18 295 1 1202 154 0 48 chr12 81397220 81397447 -62389008 - AluJo SINE Alu -11 301 86 1888 181 98 44 chr12 81397613 81398072 -62388383 - MLT1D LTR MaLR -10 495 12 1198 228 116 57 chr12 81398410 81398682 -62387773 - L1MC5 LINE L1 -77 7884 7629 2598 65 0 0 chr12 81398682 81398991 -62387464 - AluSp SINE Alu -4 309 1 1198 228 116 57 chr12 81398991 81399384 -62387071 - L1MC5 LINE L1 -332 7629 7180 1015 118 41 0 chr12 81399526 81399695 -62386760 - L1MA2 LINE L1 -7 6297 6122 2017 66 93 0 chr12 81399814 81400072 -62386383 - AluY SINE Alu -29 282 1 290 231 39 13 chr12 81400511 81400589 -62385866 + MIR SINE MIR 104 183 -79 23 54 0 0 chr12 81401471 81401508 -62384947 + AT_rich Low_complexity Low_complexity 1 37 0 2238 126 0 3 chr12 81401778 81402088 -62384367 - AluSx SINE Alu -3 309 1 22 80 0 0 chr12 81402145 81402195 -62384260 + AT_rich Low_complexity Low_complexity 1 50 0 563 309 112 6 chr12 81402666 81403032 -62383423 + L1MC4a LINE L1 5445 5849 -1959 10864 125 40 4 chr12 81403143 81404961 -62381494 + Tigger1 DNA MER2_type 1 1883 -535 1526 211 68 114 chr12 81404961 81405742 -62380713 + LTR1B LTR ERV1 1 745 -81 494 259 9 9 chr12 81405826 81405942 -62380513 + LTR28 LTR ERV1 905 1020 0 466 88 0 0 chr12 81405947 81406015 -62380440 + Tigger1 DNA MER2_type 1888 1955 -463 1206 275 97 31 chr12 81406688 81407183 -62379272 - L2 LINE L2 -4 3309 2793 2709 151 76 4 chr12 81407183 81407659 -62378796 + MER1A DNA MER1_type 1 510 -19 189 94 0 0 chr12 81407663 81407695 -62378760 + (TA)n Simple_repeat Simple_repeat 2 33 0 284 261 0 0 chr12 81407738 81407803 -62378652 - MER112 DNA MER1_type -195 65 1 385 274 0 75 chr12 81407815 81407961 -62378494 + MIR SINE MIR 49 183 -79 2170 269 111 12 chr12 81408065 81409118 -62377337 - L1M2 LINE L1 -4170 2679 1523 1826 244 57 48 chr12 81409120 81409701 -62376754 - L2 LINE L2 -556 2758 2173 21 0 0 0 chr12 81409768 81409789 -62376666 + AT_rich Low_complexity Low_complexity 1 21 0 727 280 69 110 chr12 81410491 81411117 -62375338 - HAL1 LINE L1 -1090 1417 818 1611 156 19 64 chr12 81411128 81411304 -62375151 - AluJb SINE Alu -12 300 143 2396 88 0 3 chr12 81411304 81411601 -62374854 - AluSq SINE Alu -17 296 1 1611 156 19 64 chr12 81411601 81411738 -62374717 - AluJb SINE Alu -169 143 1 543 220 63 89 chr12 81411940 81412131 -62374324 - MER58A DNA MER1_type -1 223 38 228 255 20 0 chr12 81412782 81412833 -62373622 + L2 LINE L2 3262 3313 0 881 96 0 0 chr12 81412882 81412997 -62373458 + AluSq/x SINE Alu 1 115 -197 323 269 128 59 chr12 81413067 81413286 -62373169 + MER102b DNA MER1_type 96 329 -12 1671 149 32 67 chr12 81413485 81413689 -62372766 - AluJb SINE Alu -7 305 114 2888 80 75 5 chr12 81413689 81414065 -62372390 + MLT2A1 LTR ERVL 1 410 -34 708 0 11 21 chr12 81414065 81414159 -62372296 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 2888 80 75 5 chr12 81414159 81414197 -62372258 + MLT2A1 LTR ERVL 410 444 0 1671 149 32 67 chr12 81414197 81414308 -62372147 - AluJb SINE Alu -198 114 1 2080 118 3 10 chr12 81414341 81414637 -62371818 + AluSx SINE Alu 1 294 -18 233 348 29 78 chr12 81415003 81415207 -62371248 + L2 LINE L2 2866 3059 -213 22 70 0 0 chr12 81415265 81415308 -62371147 + AT_rich Low_complexity Low_complexity 1 43 0 180 176 0 0 chr12 81415481 81415515 -62370940 + T-rich Low_complexity Low_complexity 1 34 0 219 114 0 0 chr12 81415867 81415902 -62370553 + (CA)n Simple_repeat Simple_repeat 2 36 0 493 162 0 113 chr12 81416108 81416250 -62370205 + MER58C DNA MER1_type 70 195 -20 8073 181 47 38 chr12 81416250 81417920 -62368535 + ERVL-D LTR ERVL 4007 5661 -103 2308 157 8 5 chr12 81417920 81418309 -62368146 - MLT1B LTR MaLR 0 390 1 2380 60 0 20 chr12 81418315 81418617 -62367838 - AluY SINE Alu -15 296 1 8073 181 47 38 chr12 81418617 81418674 -62367781 + ERVL-D LTR ERVL 5665 5756 -8 1879 188 55 18 chr12 81418674 81419073 -62367382 + MLT2D LTR ERVL 1 414 0 3160 137 91 40 chr12 81419305 81419997 -62366458 + LTR8A LTR ERV1 1 727 0 2037 306 84 32 chr12 81420264 81421276 -62365179 - L2 LINE L2 -144 3169 2107 2177 107 0 13 chr12 81422313 81422612 -62363843 + AluSx SINE Alu 2 296 -16 2363 100 0 0 chr12 81422663 81422964 -62363491 + AluSx SINE Alu 1 301 -11 553 221 16 16 chr12 81423102 81423226 -62363229 + Tigger3(Golem) DNA MER2_type 1 124 -2905 3948 116 8 11 chr12 81423226 81423855 -62362600 + MER41B LTR ERV1 1 627 -8 1445 135 27 31 chr12 81423882 81424142 -62362313 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2394 84 0 3 chr12 81425372 81425671 -62360784 + AluSp SINE Alu 1 298 -15 247 333 78 7 chr12 81425672 81425813 -62360642 - L2 LINE L2 -17 3296 3146 5183 145 26 18 chr12 81425924 81426754 -62359701 - L1P4 LINE L1 -410 7189 6347 3077 100 7 0 chr12 81426754 81427193 -62359262 - L1PA14 LINE L1 -10 6151 5710 5183 145 26 18 chr12 81427193 81427831 -62358624 - L1P4 LINE L1 -1252 6347 5715 734 213 11 6 chr12 81427828 81428011 -62358444 - L1P4 LINE L1 -3251 4333 4150 * 6202 173 41 18 chr12 81428011 81428930 -62357525 - L1P4 LINE L1 -3303 4281 3385 1988 102 3 35 chr12 81428930 81429214 -62357241 - AluSg SINE Alu -22 288 14 6202 173 41 18 chr12 81429214 81430458 -62355997 - L1P4 LINE L1 -4199 3385 2055 1283 135 51 0 chr12 81430461 81430676 -62355779 - L1P4 LINE L1 -7355 226 1 290 162 77 60 chr12 81430698 81430815 -62355640 + L1M4 LINE L1 2861 2979 -3167 1555 184 102 14 chr12 81430889 81431253 -62355202 + MER34 LTR ERV1 1 396 -146 256 249 109 15 chr12 81431330 81431531 -62354924 + L1M4 LINE L1 3092 3311 -2835 2138 123 10 3 chr12 81431579 81431888 -62354567 - AluSx SINE Alu -1 311 1 2220 159 81 5 chr12 81432372 81432768 -62353687 - MSTB LTR MaLR 0 426 1 8207 165 66 10 chr12 81432768 81434331 -62352124 - MSTB-int LTR MaLR 0 1651 2 2350 146 44 5 chr12 81434332 81434742 -62351713 - MSTB LTR MaLR 0 426 1 292 297 40 0 chr12 81435185 81435286 -62351169 - L2 LINE L2 -13 3300 3196 326 357 18 18 chr12 81435286 81435398 -62351057 - L2 LINE L2 -215 3057 2946 3499 164 29 3 chr12 81436088 81436741 -62349714 + L1MB3 LINE L1 5510 6179 -4 2322 175 26 26 chr12 81437103 81437560 -62348895 + MSTB2 LTR MaLR 1 457 0 1659 177 43 0 chr12 81437626 81437908 -62348547 - AluJo SINE Alu -18 294 1 1575 206 37 20 chr12 81438251 81438605 -62347850 + MLT1A2 LTR MaLR 15 374 0 556 217 170 22 chr12 81439408 81439455 -62347000 + L1MC5 LINE L1 7299 7338 -623 2453 87 0 0 chr12 81439455 81439754 -62346701 - AluSx SINE Alu -13 299 1 556 217 170 22 chr12 81439754 81440024 -62346431 + L1MC5 LINE L1 7338 7663 -298 249 224 17 17 chr12 81440644 81440702 -62345753 - L2 LINE L2 0 3313 3256 421 250 35 17 chr12 81440702 81440818 -62345637 + L1ME3 LINE L1 5976 6093 -69 2199 94 4 0 chr12 81441409 81441685 -62344770 - AluSx SINE Alu -12 300 24 314 336 87 13 chr12 81441694 81441843 -62344612 + MIR3 SINE MIR 39 198 -10 1133 213 12 27 chr12 81442446 81442704 -62343751 - LTR40b LTR ERVL -207 255 2 2292 93 0 32 chr12 81442788 81443098 -62343357 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr12 81443230 81443251 -62343204 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr12 81443421 81443445 -62343010 + (CA)n Simple_repeat Simple_repeat 1 24 0 818 147 0 7 chr12 81443485 81443621 -62342834 + FRAM SINE Alu 31 165 -11 241 196 103 82 chr12 81444231 81444328 -62342127 + MLT1J LTR MaLR 382 480 -31 250 349 249 6 chr12 81444434 81444603 -62341852 - L2 LINE L2 -424 2890 2681 * 397 241 0 51 chr12 81444584 81444721 -62341734 - MIR SINE MIR -38 224 95 947 237 84 84 chr12 81444724 81444797 -62341658 + L2 LINE L2 2860 2932 -381 1528 204 10 16 chr12 81444797 81445101 -62341354 - AluJo SINE Alu -10 302 1 947 237 84 84 chr12 81445101 81445453 -62341002 + L2 LINE L2 2931 3285 -28 1087 132 36 36 chr12 81445739 81445958 -62340497 - THE1C LTR MaLR 0 375 157 2537 57 0 0 chr12 81446499 81446799 -62339656 + AluY SINE Alu 1 300 -11 23 54 0 0 chr12 81447803 81447840 -62338615 + AT_rich Low_complexity Low_complexity 1 37 0 1525 245 97 28 chr12 81449479 81450796 -62335659 + L1ME2 LINE L1 4709 6155 -9 742 132 91 0 chr12 81450945 81451066 -62335389 + AluSq/x SINE Alu 1 132 -180 190 387 61 17 chr12 81451354 81451535 -62334920 - L2 LINE L2 -216 3056 2868 34 0 0 0 chr12 81451792 81451826 -62334629 + AT_rich Low_complexity Low_complexity 1 34 0 2220 132 0 0 chr12 81452366 81452677 -62333778 + AluSx SINE Alu 1 311 -1 2109 123 17 0 chr12 81453405 81453706 -62332749 + AluSx SINE Alu 1 306 -6 227 193 53 0 chr12 81454195 81454252 -62332203 + A-rich Low_complexity Low_complexity 6 65 0 277 204 174 31 chr12 81454980 81455078 -62331377 - MIR SINE MIR -66 142 31 360 0 0 0 chr12 81455226 81455266 -62331189 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr12 81455398 81455435 -62331020 + AT_rich Low_complexity Low_complexity 1 37 0 1926 137 11 7 chr12 81455935 81456252 -62330203 + AluSx SINE Alu 1 318 0 2283 112 3 3 chr12 81456311 81456624 -62329831 + AluSq SINE Alu 1 313 0 2313 100 3 0 chr12 81456628 81456937 -62329518 + AluSp SINE Alu 1 310 -3 206 346 45 64 chr12 81457123 81457279 -62329176 + L2 LINE L2 2242 2394 -920 * 807 183 0 0 chr12 81457193 81457330 -62329125 - MER5A DNA MER1_type -11 178 42 348 275 113 21 chr12 81457205 81457347 -62329108 + MER5A DNA MER1_type 35 189 0 * 551 322 84 22 chr12 81457358 81457715 -62328740 + L2 LINE L2 2599 2977 -337 209 303 34 87 chr12 81457740 81457948 -62328507 + L2 LINE L2 3078 3274 -39 666 293 49 44 chr12 81458809 81459219 -62327236 + MARNA DNA Mariner 53 464 -122 361 314 124 26 chr12 81459695 81459848 -62326607 - MIR3 SINE MIR -31 177 10 1096 204 17 9 chr12 81460667 81460898 -62325557 - MER8 DNA MER2_type -1 238 6 335 118 0 66 chr12 81461236 81461312 -62325143 - L1MA9 LINE L1 -1 6311 6241 227 257 30 50 chr12 81463551 81463652 -62322803 + HAL1 LINE L1 811 909 -1598 915 265 49 72 chr12 81463907 81464159 -62322296 + HAL1 LINE L1 1251 1507 -1000 1938 100 61 0 chr12 81464159 81464420 -62322035 - AluSg SINE Alu -15 295 19 915 265 49 72 chr12 81464420 81464736 -62321719 + HAL1 LINE L1 1507 1806 -701 267 211 67 33 chr12 81465064 81465154 -62321301 + HAL1 LINE L1 2072 2164 -343 1487 106 55 0 chr12 81465225 81465442 -62321013 + MER30 DNA MER1_type 1 229 -1 905 183 232 37 chr12 81465556 81465797 -62320658 + AluJo SINE Alu 1 288 -14 1122 169 58 5 chr12 81466036 81466243 -62320212 + MER20 DNA MER1_type 1 218 -1 408 312 100 40 chr12 81466563 81466864 -62319591 - MLT1J2 LTR MaLR -5 445 127 1996 142 0 10 chr12 81466883 81467194 -62319261 + AluSx SINE Alu 4 311 -1 297 164 33 16 chr12 81467496 81467557 -62318898 - MIR SINE MIR -181 81 20 1821 164 0 42 chr12 81468119 81468431 -62318024 + AluJb SINE Alu 1 299 -13 2193 124 0 9 chr12 81468431 81468746 -62317709 + AluSx SINE Alu 1 312 0 313 244 26 158 chr12 81469122 81469388 -62317067 + MIR SINE MIR 5 235 -27 266 303 79 24 chr12 81469421 81469586 -62316869 - L3b LINE CR1 -151 1432 1259 271 233 139 12 chr12 81470344 81470430 -62316025 - MIR SINE MIR -49 213 117 213 378 102 8 chr12 81470401 81470528 -62315927 - MIR3 SINE MIR -62 146 8 * 313 186 0 34 chr12 81470933 81470992 -62315463 - L2 LINE L2 -62 3251 3195 24 0 0 0 chr12 81473553 81473577 -62312878 + AT_rich Low_complexity Low_complexity 1 24 0 316 139 25 184 chr12 81473607 81473697 -62312758 - MER104 DNA Tc2 -1762 136 80 2182 117 3 0 chr12 81473697 81473995 -62312460 - AluSx SINE Alu -13 299 1 316 139 25 184 chr12 81473995 81474062 -62312393 - MER104 DNA Tc2 -1818 80 4 408 232 32 52 chr12 81474388 81474543 -62311912 - MER112 DNA MER1_type -101 159 8 236 264 28 0 chr12 81475733 81475805 -62310650 + MLT1I LTR MaLR 98 171 -238 354 23 0 0 chr12 81476639 81476682 -62309773 + (CA)n Simple_repeat Simple_repeat 2 44 0 981 295 43 63 chr12 81476778 81476934 -62309521 + L1MEd LINE L1 411 569 -5741 2254 91 7 3 chr12 81476934 81477230 -62309225 - AluSx SINE Alu -10 302 6 981 295 43 63 chr12 81477230 81477493 -62308962 + L1MEd LINE L1 569 836 -5474 2026 93 72 4 chr12 81477493 81477772 -62308683 + AluSx SINE Alu 1 298 -14 981 295 43 63 chr12 81477772 81478590 -62307865 + L1MEd LINE L1 836 1662 -4648 1845 172 36 3 chr12 81478590 81478892 -62307563 + AluJb SINE Alu 1 312 0 26 50 0 0 chr12 81479004 81479044 -62307411 + AT_rich Low_complexity Low_complexity 1 40 0 872 162 68 0 chr12 81479964 81480112 -62306343 - FRAM SINE Alu -15 161 4 529 229 55 55 chr12 81481238 81481531 -62304924 + L1MC5 LINE L1 7388 7680 -281 211 333 13 26 chr12 81482306 81482384 -62304071 + MIR SINE MIR 3 79 -183 1745 192 0 10 chr12 81482924 81483232 -62303223 + AluJo SINE Alu 1 305 -7 259 325 73 5 chr12 81483571 81483762 -62302693 - L1MC4 LINE L1 -742 7300 7097 306 264 11 0 chr12 81483772 81483863 -62302592 - L1MC5 LINE L1 -864 7097 7006 262 243 22 59 chr12 81483941 81484077 -62302378 + L1ME4a LINE L1 5870 6000 -121 232 188 0 0 chr12 81484185 81484233 -62302222 - MER117 DNA MER1_type -79 118 71 267 295 158 47 chr12 81484461 81484783 -62301672 + L2 LINE L2 2003 2360 -954 1523 66 5 19 chr12 81484944 81485157 -62301298 - THE1B LTR MaLR 0 364 155 2297 104 0 3 chr12 81485157 81485456 -62300999 + AluSx SINE Alu 1 298 -14 2410 76 0 7 chr12 81485457 81485758 -62300697 + AluSq SINE Alu 1 299 -14 535 288 84 35 chr12 81485975 81486201 -62300254 + MIR SINE MIR 13 249 -13 1971 111 20 10 chr12 81486786 81487083 -62299372 + AluSc SINE Alu 1 300 -9 1188 99 0 0 chr12 81487083 81487245 -62299210 - THE1B LTR MaLR -200 164 3 10153 104 16 31 chr12 81487252 81488850 -62297605 - THE1B-int LTR MaLR -6 1574 1 952 88 4 6 chr12 81488850 81488995 -62297460 - THE1B LTR MaLR 0 364 214 6953 216 40 36 chr12 81489055 81489222 -62297233 + L1MB1 LINE L1 2136 2301 -3845 2092 121 45 0 chr12 81489222 81489511 -62296944 + AluSx SINE Alu 3 304 -8 6953 216 40 36 chr12 81489511 81489617 -62296838 + L1MB1 LINE L1 2301 2405 -3741 2844 90 78 7 chr12 81489617 81489657 -62296798 - MLT2A2 LTR ERVL 0 453 417 342 98 0 0 chr12 81489657 81489708 -62296747 + (TA)n Simple_repeat Simple_repeat 2 52 0 2844 90 78 7 chr12 81489708 81490090 -62296365 - MLT2A2 LTR ERVL -36 417 1 6953 216 40 36 chr12 81490090 81490473 -62295982 + L1MB1 LINE L1 2405 2785 -3361 1989 127 17 10 chr12 81490473 81490765 -62295690 + AluSx SINE Alu 11 304 -8 6953 216 40 36 chr12 81490765 81490933 -62295522 + L1MB1 LINE L1 2785 2951 -3195 2180 116 3 0 chr12 81490933 81491225 -62295230 + AluSg1 SINE Alu 1 293 -16 6953 216 40 36 chr12 81491225 81492414 -62294041 + L1MB1 LINE L1 2951 4163 -1983 2182 113 7 13 chr12 81492414 81492724 -62293731 + AluSx SINE Alu 1 308 -4 6953 216 40 36 chr12 81492724 81492833 -62293622 + L1MB1 LINE L1 4163 4270 -1876 285 238 89 40 chr12 81492906 81493007 -62293448 + L2 LINE L2 3162 3267 -5 2937 177 19 58 chr12 81493201 81493786 -62292669 + L1MB1 LINE L1 4256 4862 -1284 1661 69 0 15 chr12 81493786 81493990 -62292465 - AluY SINE Alu -110 201 1 2937 177 19 58 chr12 81493990 81494020 -62292435 + L1MB1 LINE L1 4862 4892 -1254 2166 138 0 0 chr12 81494020 81494309 -62292146 - AluSx SINE Alu -23 289 1 1598 201 24 10 chr12 81494311 81494604 -62291851 - AluJo SINE Alu -15 297 1 2937 177 19 58 chr12 81494604 81494723 -62291732 + L1MB1 LINE L1 4893 4965 -1181 2227 104 0 0 chr12 81494724 81495012 -62291443 + AluSc SINE Alu 22 309 0 2338 67 13 13 chr12 81495105 81495418 -62291037 + AluSp SINE Alu 1 313 0 520 170 0 0 chr12 81495422 81495516 -62290939 + FLAM_A SINE Alu 43 136 -6 503 197 34 0 chr12 81495524 81495641 -62290814 + L1MB1 LINE L1 5010 5130 -1016 287 129 17 87 chr12 81495646 81496155 -62290300 + L1MB1 LINE L1 5574 6162 -6 287 79 0 287 chr12 81496155 81496194 -62290261 + L1MB1 LINE L1 6095 6143 -46 2166 88 42 3 chr12 81496194 81496479 -62289976 + AluY SINE Alu 3 298 -13 287 79 0 287 chr12 81496479 81496499 -62289956 + L1MB1 LINE L1 6143 6117 -72 2237 98 0 0 chr12 81496499 81496785 -62289670 + AluSg SINE Alu 2 287 -23 287 79 0 287 chr12 81496785 81496825 -62289630 + L1MB1 LINE L1 6116 6166 -23 331 271 93 0 chr12 81496941 81497048 -62289407 - MLT1J LTR MaLR -370 141 25 233 324 157 10 chr12 81497120 81497222 -62289233 + L2 LINE L2 3134 3250 -22 1818 214 14 6 chr12 81497479 81497838 -62288617 - MLT1A1 LTR MaLR 0 365 4 1751 87 0 0 chr12 81498299 81498517 -62287938 + AluSg/x SINE Alu 81 298 -12 1144 134 19 19 chr12 81498710 81498926 -62287529 + AluSg/x SINE Alu 82 297 -13 1622 182 18 11 chr12 81498989 81499275 -62287180 - AluJo SINE Alu -24 288 1 877 244 0 0 chr12 81499508 81499668 -62286787 + AluJb SINE Alu 136 295 -17 194 167 28 0 chr12 81499678 81499714 -62286741 - L2 LINE L2 -18 3295 3259 373 324 50 22 chr12 81500108 81500290 -62286165 - MLT1I LTR MaLR -204 205 19 365 349 47 13 chr12 81500306 81500455 -62286000 - MIR SINE MIR -98 164 11 205 175 0 0 chr12 81500515 81500555 -62285900 + (CAATT)n Simple_repeat Simple_repeat 3 42 0 1671 166 158 48 chr12 81500678 81501051 -62285404 + MLT2D LTR ERVL 1 414 0 3478 96 0 0 chr12 81501809 81502268 -62284187 - L1PA13 LINE L1 -1 6162 5704 190 347 14 0 chr12 81502400 81502472 -62283983 + MIR SINE MIR 45 117 -91 323 240 16 128 chr12 81502503 81502628 -62283827 - L1ME1 LINE L1 -127 6039 5929 2271 116 3 0 chr12 81502639 81502949 -62283506 - AluSq SINE Alu -2 311 1 22 0 0 0 chr12 81503019 81503041 -62283414 + AT_rich Low_complexity Low_complexity 1 22 0 1798 134 0 0 chr12 81503103 81503349 -62283106 + AluSx SINE Alu 1 246 -66 610 241 67 67 chr12 81503369 81503593 -62282862 + MIR SINE MIR 20 243 -19 455 335 5 30 chr12 81504400 81504597 -62281858 - LTR16C LTR ERVL 0 491 300 2143 218 24 125 chr12 81504637 81505294 -62281161 + MLT1E LTR MaLR 1 591 -2 1661 236 14 8 chr12 81505296 81505782 -62280673 + MLT1E-int LTR MaLR 1 605 -766 305 343 12 18 chr12 81505998 81506167 -62280288 + MLT1E-int LTR MaLR 720 887 -484 906 223 35 135 chr12 81506276 81506654 -62279801 + MLT1E-int LTR MaLR 961 1294 -77 2360 89 33 45 chr12 81506654 81507013 -62279442 + THE1A LTR MaLR 1 355 0 906 223 35 135 chr12 81507013 81507056 -62279399 + MLT1E-int LTR MaLR 1294 1340 -31 2202 241 73 25 chr12 81507069 81507633 -62278822 + MLT1E LTR MaLR 3 593 0 2710 344 56 25 chr12 81507866 81508410 -62278045 - ERVL LTR ERVL -482 5282 4756 2389 105 0 0 chr12 81508410 81508714 -62277741 - AluSx SINE Alu -8 304 1 2710 344 56 25 chr12 81508714 81509641 -62276814 - ERVL LTR ERVL -1008 4756 3766 3930 204 42 7 chr12 81509716 81510536 -62275919 - Charlie1a DNA MER1_type -603 852 5 24 0 0 0 chr12 81510892 81510916 -62275539 + AT_rich Low_complexity Low_complexity 1 24 0 388 288 135 29 chr12 81511811 81512022 -62274433 - MIR SINE MIR -11 251 15 3809 136 13 2 chr12 81513315 81513836 -62272619 - MER1A DNA MER1_type 0 527 1 270 0 0 0 chr12 81513844 81513874 -62272581 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2170 90 0 7 chr12 81513880 81514158 -62272297 - AluSp SINE Alu -37 276 1 21 0 0 0 chr12 81515030 81515051 -62271404 + AT_rich Low_complexity Low_complexity 1 21 0 1496 167 46 95 chr12 81515391 81515780 -62270675 - MLT1A2 LTR MaLR -4 370 1 1761 195 0 0 chr12 81515850 81516152 -62270303 + AluJb SINE Alu 1 302 -10 1085 145 17 17 chr12 81516573 81516752 -62269703 - MSTC LTR MaLR -247 181 3 2378 92 3 9 chr12 81516893 81517208 -62269247 + AluSp SINE Alu 1 313 0 1873 169 3 3 chr12 81517219 81517509 -62268946 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr12 81517509 81517540 -62268915 + AT_rich Low_complexity Low_complexity 1 31 0 919 216 18 0 chr12 81518120 81518291 -62268164 + MER63A DNA MER1_type 36 209 -1 25 0 0 0 chr12 81518393 81518418 -62268037 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 81518458 81518479 -62267976 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 891 171 0 0 chr12 81518486 81518615 -62267840 - FRAM SINE Alu -30 146 18 615 160 0 0 chr12 81518669 81518763 -62267692 - AluJo SINE Alu -175 137 44 412 294 343 7 chr12 81519143 81519554 -62266901 + L2 LINE L2 2239 2787 -527 251 356 19 0 chr12 81519636 81519740 -62266715 + L2 LINE L2 2802 2907 -407 1964 138 0 3 chr12 81520143 81520448 -62266007 - AluSx SINE Alu 0 304 1 309 169 49 39 chr12 81520591 81520680 -62265775 - MLT1G3 LTR MaLR 0 590 462 535 245 29 7 chr12 81520723 81520862 -62265593 - MLT1G3 LTR MaLR -199 331 190 * 1241 240 11 0 chr12 81520857 81521124 -62265331 + LTR16A LTR ERVL 181 450 0 739 314 79 20 chr12 81521698 81522039 -62264416 + L2 LINE L2 2953 3313 0 2649 130 53 10 chr12 81522553 81522969 -62263486 - MER61C LTR ERV1 0 434 1 4476 126 8 81 chr12 81523613 81524048 -62262407 + MER4E LTR ERV1 1 466 -300 2544 50 0 7 chr12 81524048 81524348 -62262107 + AluY SINE Alu 1 298 -13 4476 126 8 81 chr12 81524348 81524364 -62262091 + MER4E LTR ERV1 466 482 -284 1933 136 44 0 chr12 81524364 81524658 -62261797 + AluSx SINE Alu 2 308 -4 4476 126 8 81 chr12 81524658 81525031 -62261424 + MER4E LTR ERV1 482 766 0 1014 231 0 32 chr12 81526219 81526440 -62260015 - MLT1G LTR MaLR -294 296 83 970 256 44 22 chr12 81526472 81526832 -62259623 - L1MDa LINE L1 -4366 2174 1807 * 2184 259 63 45 chr12 81526804 81527110 -62259345 - L1ME LINE L1 -4535 2005 1706 245 29 29 0 chr12 81527110 81527144 -62259311 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2184 259 63 45 chr12 81527144 81527592 -62258863 - L1ME LINE L1 -4834 1706 1246 2439 151 31 0 chr12 81527592 81527977 -62258478 + L1PA16 LINE L1 5759 6155 -11 2184 259 63 45 chr12 81527977 81528241 -62258214 - L1ME LINE L1 -5294 1246 988 348 284 17 9 chr12 81528274 81528390 -62258065 - L1ME LINE L1 -5518 1025 909 373 369 27 27 chr12 81528918 81529211 -62257244 - L1ME LINE L1 -6210 330 38 2315 137 123 8 chr12 81529627 81530008 -62256447 + MSTA LTR MaLR 4 428 0 235 305 0 0 chr12 81530232 81530291 -62256164 - L3 LINE CR1 -12 1565 1507 2238 103 3 3 chr12 81530381 81530683 -62255772 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr12 81530787 81530810 -62255645 + AT_rich Low_complexity Low_complexity 1 23 0 291 289 255 39 chr12 81531282 81531486 -62254969 + MIR SINE MIR 15 262 0 1814 141 10 50 chr12 81531598 81531922 -62254533 - AluJb SINE Alu 0 312 1 22 0 0 0 chr12 81532440 81532462 -62253993 + AT_rich Low_complexity Low_complexity 1 22 0 411 274 17 8 chr12 81532531 81532648 -62253807 + MIR3 SINE MIR 37 154 -54 2349 91 0 0 chr12 81534697 81534995 -62251460 + AluSg SINE Alu 1 298 -12 652 215 57 13 chr12 81536383 81536541 -62249914 + MIR SINE MIR 97 261 -1 1896 162 6 16 chr12 81537413 81537727 -62248728 - AluJo SINE Alu -1 311 1 300 27 0 0 chr12 81537843 81537880 -62248575 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 419 271 78 36 chr12 81538119 81538285 -62248170 + MIR SINE MIR 56 228 -34 3165 167 24 6 chr12 81538376 81538920 -62247535 - MER68 LTR ERV1 -8 554 1 364 260 172 30 chr12 81538971 81539140 -62247315 + Charlie8 DNA MER1_type 84 276 -2141 22 35 0 0 chr12 81539543 81539572 -62246883 + AT_rich Low_complexity Low_complexity 1 29 0 2821 228 111 69 chr12 81540319 81541302 -62245153 - L2 LINE L2 0 3313 2186 1644 161 32 76 chr12 81541302 81541618 -62244837 + AluJo SINE Alu 1 302 -10 2821 228 111 69 chr12 81541618 81542253 -62244202 - L2 LINE L2 -1127 2186 1579 24 0 0 0 chr12 81543552 81543576 -62242879 + AT_rich Low_complexity Low_complexity 1 24 0 252 239 0 0 chr12 81543784 81543830 -62242625 - MER58 DNA MER1_type -2185 235 190 240 35 0 0 chr12 81543831 81543860 -62242595 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1704 145 50 4 chr12 81543867 81544129 -62242326 - AluSg SINE Alu -36 274 1 223 224 0 41 chr12 81544436 81544485 -62241970 - L2 LINE L2 -13 3259 3213 1211 228 80 31 chr12 81544485 81544655 -62241800 + MER58B DNA MER1_type 1 161 -2259 2320 111 0 0 chr12 81544655 81544962 -62241493 + AluSx SINE Alu 1 307 -5 1211 228 80 31 chr12 81544962 81545116 -62241339 + MER58B DNA MER1_type 161 341 0 2343 71 0 23 chr12 81545254 81545562 -62240893 + AluY SINE Alu 1 301 -10 210 256 0 0 chr12 81545571 81545614 -62240841 - MIR SINE MIR -141 121 79 519 275 20 8 chr12 81545824 81545953 -62240502 - MIR SINE MIR -82 126 23 1094 219 17 17 chr12 81545976 81546213 -62240242 - MIR SINE MIR -14 248 12 232 397 21 0 chr12 81546218 81546359 -62240096 + L3 LINE CR1 431 574 -1003 727 249 62 59 chr12 81546363 81546636 -62239819 + Charlie7 DNA MER1_type 216 489 -2123 807 251 45 6 chr12 81547008 81547187 -62239268 + MER5A DNA MER1_type 1 186 -3 580 227 110 12 chr12 81547323 81547427 -62239028 + MER5A DNA MER1_type 4 131 -58 599 189 71 24 chr12 81547427 81547554 -62238901 - FLAM_C SINE Alu 0 133 1 580 227 110 12 chr12 81547554 81547612 -62238843 + MER5A DNA MER1_type 131 182 -7 421 233 45 8 chr12 81548239 81548372 -62238083 + L1ME4a LINE L1 5983 6120 -1 613 209 43 18 chr12 81548393 81548556 -62237899 - L1ME2 LINE L1 -6 6158 5992 2349 81 3 0 chr12 81549220 81549515 -62236940 - AluSp SINE Alu -17 296 1 287 308 85 8 chr12 81549521 81549651 -62236804 - L2 LINE L2 -13 3300 3161 1466 213 13 16 chr12 81549791 81550096 -62236359 - AluJo SINE Alu -8 304 1 368 214 145 15 chr12 81550163 81550294 -62236161 + L1ME4a LINE L1 5973 6120 -1 524 273 81 6 chr12 81550506 81550678 -62235777 - MIR SINE MIR -29 233 49 3878 117 20 13 chr12 81550847 81551446 -62235009 - LTR26 LTR ERV1 0 603 1 1866 161 0 3 chr12 81551535 81551826 -62234629 - AluJb SINE Alu -22 290 1 2235 121 0 7 chr12 81552080 81552386 -62234069 - AluSx SINE Alu -8 304 1 1738 195 0 7 chr12 81552992 81553290 -62233165 + AluJb SINE Alu 1 296 -16 382 271 9 64 chr12 81553290 81553422 -62233033 - HAL1 LINE L1 -1 2506 2389 2085 164 16 19 chr12 81553422 81553788 -62232667 - MLT1A1 LTR MaLR 0 365 1 382 271 9 64 chr12 81553788 81553873 -62232582 - HAL1 LINE L1 -118 2389 2301 309 263 179 16 chr12 81554479 81554669 -62231786 + LTR16C LTR ERVL 233 453 -38 2303 99 0 0 chr12 81554764 81555056 -62231399 + AluSq SINE Alu 5 296 -17 1264 236 97 42 chr12 81555056 81555727 -62230728 - HAL1 LINE L1 -247 2260 1451 592 101 8 47 chr12 81555727 81555856 -62230599 + (TTTC)n Simple_repeat Simple_repeat 4 127 0 2015 138 10 0 chr12 81555859 81556157 -62230298 - AluJo SINE Alu -9 303 3 399 309 99 20 chr12 81556162 81556363 -62230092 - HAL1 LINE L1 -1045 1462 1246 185 0 40 0 chr12 81556401 81556426 -62230029 + (TG)n Simple_repeat Simple_repeat 2 27 0 1730 138 98 0 chr12 81556432 81556708 -62229747 - AluJo SINE Alu -8 304 2 329 244 30 8 chr12 81556708 81556839 -62229616 - HAL1 LINE L1 -1340 1167 1034 283 346 51 33 chr12 81556844 81557179 -62229276 - HAL1 LINE L1 -2008 499 159 2497 57 3 16 chr12 81557282 81557597 -62228858 - AluY SINE Alu 0 311 1 790 281 52 13 chr12 81557718 81557949 -62228506 - MIR SINE MIR -21 241 2 182 316 71 51 chr12 81557969 81558067 -62228388 - MIR SINE MIR -87 121 22 1002 135 0 0 chr12 81558288 81558421 -62228034 + FRAM SINE Alu 17 149 -27 2090 109 0 11 chr12 81558431 81558752 -62227703 + AluSx SINE Alu 1 318 0 198 0 0 0 chr12 81559163 81559185 -62227270 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 8011 171 70 11 chr12 81559336 81560864 -62225591 + MER52A LTR ERV1 138 1755 0 683 223 72 0 chr12 81561270 81561409 -62225046 - MIR SINE MIR -113 149 1 771 148 0 70 chr12 81561535 81561677 -62224778 - FLAM_A SINE Alu 0 133 2 284 191 59 0 chr12 81561730 81561798 -62224657 + MIR SINE MIR 147 218 -44 245 295 13 0 chr12 81562047 81562125 -62224330 + MIR SINE MIR 148 226 -36 524 330 52 0 chr12 81562244 81562438 -62224017 - L3 LINE CR1 -111 1466 1263 1654 187 43 55 chr12 81562476 81562969 -62223486 + Charlie4a DNA MER1_type 21 507 -1 256 238 226 12 chr12 81562969 81563053 -62223402 - L3 LINE CR1 -284 1293 1192 241 337 47 52 chr12 81563365 81563537 -62222918 - MIR SINE MIR -33 229 59 1104 38 0 0 chr12 81564161 81564293 -62222162 + L1PA3 LINE L1 6021 6152 -3 28 0 0 0 chr12 81564293 81564321 -62222134 + AT_rich Low_complexity Low_complexity 1 28 0 191 346 94 24 chr12 81564528 81564655 -62221800 - L2 LINE L2 0 3272 3137 283 264 58 11 chr12 81565949 81566036 -62220419 + MIR3 SINE MIR 115 205 -3 423 0 0 0 chr12 81566193 81566240 -62220215 + (TG)n Simple_repeat Simple_repeat 2 48 0 1715 171 7 34 chr12 81568165 81568458 -62217997 + AluJo SINE Alu 3 287 -25 1921 136 45 0 chr12 81568982 81569269 -62217186 - AluSx SINE Alu -12 300 1 243 0 0 0 chr12 81569494 81569521 -62216934 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2190 101 0 0 chr12 81569523 81569801 -62216654 - AluSg SINE Alu -32 278 1 219 218 0 0 chr12 81570212 81570267 -62216188 + CT-rich Low_complexity Low_complexity 2 56 0 523 272 84 40 chr12 81570288 81570861 -62215594 + L1 LINE L1 4246 4843 -1303 349 346 59 50 chr12 81570964 81571027 -62215428 + L1 LINE L1 4906 4967 -1179 1066 195 8 29 chr12 81571027 81571268 -62215187 - MER106A DNA MER1_type 0 236 1 349 346 59 50 chr12 81571268 81571664 -62214791 + L1 LINE L1 4967 5369 -777 236 379 50 7 chr12 81571666 81571806 -62214649 - L2 LINE L2 -2507 807 662 624 195 149 0 chr12 81571908 81572062 -62214393 + LTR40b LTR ERVL 3 179 -283 934 175 0 0 chr12 81572124 81572267 -62214188 + AluJo SINE Alu 1 143 -169 6259 122 13 25 chr12 81572270 81572501 -62213954 + L1PB1 LINE L1 4567 4799 -1352 2373 78 3 0 chr12 81572501 81572795 -62213660 + AluSx SINE Alu 2 296 -16 6259 122 13 25 chr12 81572795 81573613 -62212842 + L1PB1 LINE L1 4799 5585 -566 2160 118 0 3 chr12 81573613 81573910 -62212545 + AluSg SINE Alu 1 296 -14 6259 122 13 25 chr12 81573910 81574469 -62211986 + L1PB1 LINE L1 5585 6150 -1 1003 183 6 11 chr12 81574471 81574646 -62211809 + AluJo SINE Alu 120 293 -19 787 218 58 25 chr12 81574646 81574889 -62211566 + LTR40b LTR ERVL 185 435 -27 21 0 0 0 chr12 81575419 81575440 -62211015 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr12 81575455 81575478 -62210977 + (A)n Simple_repeat Simple_repeat 1 23 0 184 289 0 0 chr12 81575527 81575572 -62210883 - L2 LINE L2 -2859 455 411 340 267 47 0 chr12 81576398 81576484 -62209971 + L1MC4 LINE L1 6614 6703 -1339 2378 107 7 0 chr12 81576693 81577001 -62209454 - AluSx SINE Alu -2 310 1 672 312 69 11 chr12 81577850 81578193 -62208262 - MLT1J LTR MaLR -51 460 98 1664 180 8 20 chr12 81578193 81578548 -62207907 + MLT1A1 LTR MaLR 4 354 -11 309 245 85 19 chr12 81578551 81578657 -62207798 - MLT1J LTR MaLR -398 113 1 1519 170 4 0 chr12 81578732 81578962 -62207493 + AluJb SINE Alu 1 231 -81 186 206 33 141 chr12 81579369 81579461 -62206994 - L3 LINE CR1 -102 1475 1394 450 0 0 0 chr12 81580590 81580640 -62205815 + (TG)n Simple_repeat Simple_repeat 2 51 0 225 0 0 0 chr12 81580819 81580844 -62205611 + (T)n Simple_repeat Simple_repeat 1 25 0 2400 103 0 3 chr12 81582175 81582485 -62203970 - AluSc SINE Alu 0 309 1 1682 161 8 0 chr12 81582559 81582826 -62203629 - AluJb SINE Alu -16 296 28 1835 165 0 3 chr12 81583349 81583663 -62202792 - AluJo SINE Alu 0 313 1 2164 124 30 36 chr12 81583770 81584134 -62202321 + THE1B LTR MaLR 3 364 0 232 153 102 0 chr12 81584322 81584381 -62202074 - LTR37B LTR ERV1 -3 465 401 276 318 0 0 chr12 81585052 81585115 -62201340 + MIR SINE MIR 2 64 -198 973 220 37 5 chr12 81585126 81585344 -62201111 + MIR SINE MIR 28 252 -10 896 134 0 8 chr12 81585742 81585869 -62200586 + AluSq/x SINE Alu 1 126 -187 216 0 0 0 chr12 81585869 81585893 -62200562 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 374 254 61 0 chr12 81585893 81586007 -62200448 - L1M4 LINE L1 -1300 4846 4726 1713 177 7 25 chr12 81586023 81586306 -62200149 + AluJo SINE Alu 5 282 -30 195 42 0 0 chr12 81586308 81586332 -62200123 + (CAT)n Simple_repeat Simple_repeat 2 25 0 316 187 61 2 chr12 81586409 81586483 -62199972 + MLT1G LTR MaLR 1 79 -478 1652 196 25 50 chr12 81586532 81586929 -62199526 + MLT1B LTR MaLR 1 387 -3 685 181 84 12 chr12 81586939 81587105 -62199350 + L1MC4a LINE L1 7561 7738 -70 35 24 0 0 chr12 81587163 81587205 -62199250 + AT_rich Low_complexity Low_complexity 1 42 0 426 265 161 8 chr12 81587341 81587696 -62198759 - L1MDa LINE L1 -871 1619 1280 538 301 111 53 chr12 81587713 81587806 -62198649 - L1MDa LINE L1 -4862 1257 1171 2350 68 10 0 chr12 81587806 81588098 -62198357 + AluY SINE Alu 1 295 -16 538 301 111 53 chr12 81588098 81588456 -62197999 - L1MDa LINE L1 -4948 1171 780 672 30 91 18 chr12 81588460 81588625 -62197830 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 630 116 56 8 chr12 81588636 81589131 -62197324 + (TTATA)n Simple_repeat Simple_repeat 1 518 0 23 0 0 0 chr12 81589246 81589269 -62197186 + AT_rich Low_complexity Low_complexity 1 23 0 197 142 26 44 chr12 81589284 81589397 -62197058 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 539 102 40 28 chr12 81589420 81589596 -62196859 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 581 226 42 90 chr12 81590038 81590250 -62196205 + L2 LINE L2 3112 3313 0 1527 208 34 17 chr12 81590398 81590754 -62195701 + MLT1A1 LTR MaLR 1 362 -3 715 295 119 60 chr12 81591011 81591033 -62195422 - L2 LINE L2 -1 3312 3293 225 0 0 0 chr12 81591033 81591058 -62195397 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 715 295 119 60 chr12 81591058 81591204 -62195251 - L2 LINE L2 -20 3293 3157 456 35 0 0 chr12 81591204 81591262 -62195193 + (TC)n Simple_repeat Simple_repeat 1 58 0 1827 137 0 4 chr12 81591266 81591528 -62194927 - AluSx SINE Alu -36 276 16 715 295 119 60 chr12 81591528 81591937 -62194518 - L2 LINE L2 -158 3155 2708 2539 52 0 10 chr12 81591941 81592250 -62194205 - AluY SINE Alu -5 306 1 2158 125 3 0 chr12 81592687 81592991 -62193464 - AluSx SINE Alu -7 305 1 264 292 14 14 chr12 81593307 81593379 -62193076 + MIR SINE MIR 3 74 -188 321 286 138 25 chr12 81593837 81594040 -62192415 + LTR67 LTR ERVL 329 554 -3 283 330 97 0 chr12 81594284 81594387 -62192068 + L2 LINE L2 3150 3262 -10 804 282 140 43 chr12 81594677 81595071 -62191384 - L2 LINE L2 0 3313 2882 2281 109 3 0 chr12 81595071 81595374 -62191081 + AluSx SINE Alu 1 304 -8 1589 252 87 35 chr12 81595383 81595580 -62190875 + MLT1E LTR MaLR 1 186 -407 1833 237 28 49 chr12 81595580 81596154 -62190301 + MER68 LTR ERV1 1 562 0 1589 252 87 35 chr12 81596154 81596520 -62189935 + MLT1E LTR MaLR 186 593 0 256 331 138 7 chr12 81596521 81596666 -62189789 - L2 LINE L2 -427 2887 2724 683 272 6 12 chr12 81596697 81596866 -62189589 - MER5B DNA MER1_type -4 174 7 1876 163 3 7 chr12 81597255 81597549 -62188906 - AluJb SINE Alu -19 293 1 999 185 0 23 chr12 81597836 81598009 -62188446 + AluJb SINE Alu 137 305 -7 583 277 77 23 chr12 81598340 81598560 -62187895 - L2 LINE L2 0 3313 3082 565 260 153 34 chr12 81598618 81598853 -62187602 + MER102a DNA MER1_type 43 305 -25 1656 193 7 0 chr12 81599052 81599342 -62187113 - AluJb SINE Alu -20 292 1 589 210 228 31 chr12 81599459 81599621 -62186834 + MER69 DNA AcHobo 95 288 -2238 * 1428 213 83 23 chr12 81599605 81599990 -62186465 + MER69 DNA AcHobo 1457 1864 -662 1445 222 211 43 chr12 81600012 81600638 -62185817 + LTR41 LTR ERVL 43 773 0 * 2342 177 61 94 chr12 81600638 81601162 -62185293 + MER69 DNA AcHobo 1863 2403 -123 3291 137 61 8 chr12 81601162 81601686 -62184769 - MER41C LTR ERV1 0 554 3 1504 174 53 32 chr12 81601686 81601968 -62184487 + AluJo SINE Alu 4 291 -21 2342 177 61 94 chr12 81601968 81602117 -62184338 + MER69 DNA AcHobo 2401 2515 -11 1683 195 0 19 chr12 81603750 81604068 -62182387 - AluJb SINE Alu 0 312 1 3339 161 13 36 chr12 81604091 81604694 -62181761 - L1PA16 LINE L1 -8 6158 5570 1969 68 0 0 chr12 81604977 81605211 -62181244 - AluY SINE Alu -77 234 1 464 304 7 20 chr12 81605311 81605459 -62180996 + MER91A DNA MER1_type 4 149 -47 194 312 291 7 chr12 81606202 81606343 -62180112 + L2 LINE L2 2932 3112 -160 818 225 0 19 chr12 81606636 81606796 -62179659 + FRAM SINE Alu 1 157 -9 2577 42 0 13 chr12 81606898 81607209 -62179246 - AluY SINE Alu -3 308 2 5370 92 23 4 chr12 81607209 81607915 -62178540 - LTR30 LTR ERV1 -3 719 1 4219 100 17 10 chr12 81607915 81608505 -62177950 - HERV30 LTR ERV1 0 8257 7664 * 28047 90 3 4 chr12 81608499 81612111 -62174344 - HERV30 LTR ERV1 -4649 3608 1 5632 79 23 3 chr12 81612111 81612819 -62173636 - LTR30 LTR ERV1 0 722 1 229 327 58 19 chr12 81612959 81613115 -62173340 + LTR67 LTR ERVL 396 557 0 796 277 165 37 chr12 81613115 81613600 -62172855 + L2 LINE L2 2751 3309 -4 527 264 32 8 chr12 81613598 81613723 -62172732 - MIR SINE MIR -115 147 20 * 199 190 35 0 chr12 81614172 81614230 -62172225 + T-rich Low_complexity Low_complexity 4 63 0 547 218 0 0 chr12 81614563 81614664 -62171791 - FRAM SINE Alu -75 101 1 289 248 77 51 chr12 81614668 81614785 -62171670 + MIR SINE MIR 117 236 -26 2151 104 0 17 chr12 81614929 81615227 -62171228 - AluSg SINE Alu -17 293 1 545 232 118 118 chr12 81615543 81616043 -62170412 + L1ME4a LINE L1 5502 6004 -117 1463 176 99 0 chr12 81616043 81616316 -62170139 + AluJo SINE Alu 1 300 -12 545 232 118 118 chr12 81616316 81616432 -62170023 + L1ME4a LINE L1 6003 6118 -3 255 335 168 11 chr12 81616791 81616970 -62169485 - L2 LINE L2 -39 3233 3027 2076 118 3 23 chr12 81617470 81617775 -62168680 - AluSx SINE Alu -13 299 1 482 216 64 83 chr12 81617866 81618070 -62168385 + LTR37A LTR ERV1 141 340 -86 529 131 0 71 chr12 81618183 81618282 -62168173 + AluS SINE Alu 220 311 -1 1930 120 4 0 chr12 81618882 81619148 -62167307 - AluSx SINE Alu -10 302 36 2399 264 27 73 chr12 81619154 81620246 -62166209 + L2 LINE L2 2153 3191 -122 568 313 73 12 chr12 81620298 81620544 -62165911 + MIR SINE MIR 2 262 0 829 301 66 23 chr12 81620667 81620969 -62165486 + LTR16A LTR ERVL 130 444 -6 22 0 0 0 chr12 81621504 81621526 -62164929 + AT_rich Low_complexity Low_complexity 1 22 0 402 264 82 44 chr12 81622993 81623152 -62163303 + MIR3 SINE MIR 19 183 -25 705 233 47 120 chr12 81623265 81623452 -62163003 - MER110 LTR ERV1 -9 482 283 1561 179 7 34 chr12 81623452 81623743 -62162712 + AluJo SINE Alu 18 300 -12 705 233 47 120 chr12 81623743 81624028 -62162427 - MER110 LTR ERV1 -208 283 80 678 313 113 3 chr12 81624205 81624515 -62161940 + L2 LINE L2 2267 2610 -704 663 315 93 29 chr12 81624541 81624951 -62161504 + L2 LINE L2 2878 3313 0 252 282 55 9 chr12 81625729 81625839 -62160616 - L2 LINE L2 -4 3309 3195 440 287 7 126 chr12 81625871 81626164 -62160291 - L2 LINE L2 -493 2821 2564 686 202 0 0 chr12 81626222 81626336 -62160119 - FLAM_A SINE Alu -6 136 23 2170 113 3 3 chr12 81626500 81626791 -62159664 - AluSx SINE Alu -17 295 5 270 291 133 31 chr12 81628238 81628434 -62158021 + MIR SINE MIR 47 262 0 1968 197 108 2 chr12 81628499 81628906 -62157549 - MLT1D LTR MaLR -2 503 54 1034 175 52 131 chr12 81628908 81629314 -62157141 - MLT2C2 LTR ERVL -8 456 83 371 229 11 104 chr12 81629222 81629405 -62157050 - MLT1D LTR MaLR -339 166 1 * 219 302 88 166 chr12 81629424 81629755 -62156700 - L2 LINE L2 -35 3237 2933 1650 199 34 84 chr12 81629821 81630238 -62156217 - MSTD LTR MaLR 0 396 1 1136 271 80 41 chr12 81630367 81630828 -62155627 + MLT1L LTR MaLR 1 479 -136 2217 123 0 0 chr12 81631182 81631491 -62154964 + AluSx SINE Alu 1 309 -3 821 197 0 0 chr12 81632635 81632772 -62153683 + FLAM_C SINE Alu 1 137 -6 199 328 151 17 chr12 81632859 81632978 -62153477 - L2 LINE L2 0 3272 3138 682 320 36 12 chr12 81633009 81633259 -62153196 - MIR SINE MIR -6 256 1 12558 146 27 7 chr12 81633459 81636115 -62150340 + L1M1 LINE L1 14 3394 -4171 1650 133 64 32 chr12 81636945 81637050 -62149405 + L1M1 LINE L1 3377 3477 -4088 327 49 0 0 chr12 81637050 81637091 -62149364 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1650 133 64 32 chr12 81637091 81637466 -62148989 + L1M1 LINE L1 3477 3876 -3689 605 181 16 0 chr12 81637466 81637593 -62148862 + (TATATG)n Simple_repeat Simple_repeat 6 134 0 229 65 0 0 chr12 81637595 81637641 -62148814 + LTR66 LTR ERVL 394 439 -171 * 291 172 0 0 chr12 81637615 81637679 -62148776 - LTR66 LTR ERVL -171 439 376 1133 249 0 27 chr12 81637680 81637912 -62148543 + L1M1 LINE L1 3897 4121 -3444 1626 190 24 0 chr12 81637912 81638201 -62148254 - AluJo SINE Alu -16 296 1 1133 249 0 27 chr12 81638201 81638265 -62148190 + L1M1 LINE L1 4121 4185 -3380 490 249 131 73 chr12 81638378 81638843 -62147612 + L1MCa LINE L1 959 1450 -4976 288 301 153 6 chr12 81638840 81638865 -62147590 + L1MCa LINE L1 1767 1787 -4820 * 1983 120 13 20 chr12 81638865 81639194 -62147261 + AluSx SINE Alu 1 312 0 288 301 153 6 chr12 81639194 81639237 -62147218 + L1MCa LINE L1 1787 1822 -4785 1986 141 3 0 chr12 81639237 81639571 -62146884 + AluSx SINE Alu 1 335 0 288 301 153 6 chr12 81639571 81639676 -62146779 + L1MCa LINE L1 1822 1968 -4639 715 39 19 0 chr12 81639722 81639825 -62146630 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 325 297 59 0 chr12 81640517 81640618 -62145837 + MER91C DNA MER1_type 33 139 -1 200 143 24 0 chr12 81641027 81641069 -62145386 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 518 301 61 72 chr12 81641130 81641505 -62144950 + MLT1K LTR MaLR 75 445 -143 197 193 0 88 chr12 81642343 81642400 -62144055 - L2 LINE L2 0 3313 3262 1841 138 3 40 chr12 81642671 81642969 -62143486 + AluSx SINE Alu 1 287 -25 499 142 37 0 chr12 81642970 81643104 -62143351 + (TA)n Simple_repeat Simple_repeat 2 140 0 3498 120 45 15 chr12 81643230 81643779 -62142676 + LTR49 LTR ERV1 30 595 0 1589 160 23 56 chr12 81644086 81644392 -62142063 + AluSx SINE Alu 1 296 -16 243 0 0 0 chr12 81644403 81644430 -62142025 + (CA)n Simple_repeat Simple_repeat 2 28 0 1652 179 7 3 chr12 81644547 81644837 -62141618 - AluJo SINE Alu -21 291 1 24 0 0 0 chr12 81645012 81645036 -62141419 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 81645199 81645226 -62141229 + (CA)n Simple_repeat Simple_repeat 2 28 0 789 277 56 40 chr12 81645277 81645713 -62140742 - L1MC/D LINE L1 -2009 5799 5313 2281 86 3 3 chr12 81645775 81646065 -62140390 - AluSg SINE Alu -20 290 1 2441 93 0 0 chr12 81646066 81646377 -62140078 - AluSx SINE Alu -1 311 1 6140 99 39 14 chr12 81646635 81647012 -62139443 - L1PB1 LINE L1 -3 6864 6498 2234 89 3 45 chr12 81647012 81647325 -62139130 - AluSg SINE Alu -10 300 1 6140 99 39 14 chr12 81647325 81648134 -62138321 - L1PB1 LINE L1 -369 6498 5673 6923 199 1 2 chr12 81648151 81649750 -62136705 - L1PB1 LINE L1 -1280 5582 3984 7807 89 5 19 chr12 81649750 81650822 -62135633 + MER11C LTR ERVK 1 1057 -14 11785 204 139 15 chr12 81650861 81652016 -62134439 - L1PB1 LINE L1 -2872 3990 2980 2527 72 0 0 chr12 81652016 81652322 -62134133 + AluY SINE Alu 1 306 -5 11785 204 139 15 chr12 81652322 81654587 -62131868 - L1PB1 LINE L1 -3882 2980 6 426 299 61 43 chr12 81655025 81655038 -62131417 - MLT1K LTR MaLR -17 571 560 3898 149 46 3 chr12 81655038 81655664 -62130791 - MER39B LTR ERV1 0 653 1 426 299 61 43 chr12 81655664 81655881 -62130574 - MLT1K LTR MaLR -28 560 337 259 172 16 78 chr12 81656324 81656388 -62130067 - L2 LINE L2 -16 3256 3197 4365 143 9 31 chr12 81656515 81657201 -62129254 - LTR51 LTR ERV1 0 671 1 1867 221 176 11 chr12 81657208 81657738 -62128717 - L1MC4 LINE L1 -35 8007 7391 657 332 35 35 chr12 81658009 81658383 -62128072 + LTR16C LTR ERVL 118 491 0 298 329 92 43 chr12 81658384 81658591 -62127864 + ERVL LTR ERVL 2 218 -4778 545 340 30 19 chr12 81658746 81659008 -62127447 + ERVL LTR ERVL 360 624 -4372 744 333 62 58 chr12 81659148 81660042 -62126413 + ERVL LTR ERVL 984 1919 -3774 2869 120 30 16 chr12 81660051 81660477 -62125978 + MSTB1 LTR MaLR 1 432 0 2231 121 32 42 chr12 81660499 81660878 -62125577 - THE1C LTR MaLR 0 375 1 201 186 0 0 chr12 81660887 81660904 -62125551 + A-rich Low_complexity Low_complexity 1 17 -26 1777 168 9 22 chr12 81660904 81661219 -62125236 + AluJb SINE Alu 1 311 -1 201 186 0 0 chr12 81661219 81661244 -62125211 + A-rich Low_complexity Low_complexity 16 43 0 2365 69 7 13 chr12 81661421 81661725 -62124730 + AluSg SINE Alu 1 302 -8 2253 88 14 0 chr12 81661736 81662031 -62124424 + AluSp SINE Alu 1 299 -14 432 226 57 8 chr12 81662203 81662327 -62124128 + LTR65 LTR ERV1 35 164 -505 2521 67 3 6 chr12 81663011 81663325 -62123130 + AluSq SINE Alu 1 313 0 7743 148 43 41 chr12 81663905 81664410 -62122045 - L1M4 LINE L1 -3532 2850 2347 2356 102 0 0 chr12 81664410 81664714 -62121741 - AluSg SINE Alu -6 304 1 7743 148 43 41 chr12 81664714 81664900 -62121555 - L1M4 LINE L1 -4035 2347 2163 2469 67 0 3 chr12 81664900 81665199 -62121256 + AluY SINE Alu 1 298 -13 7743 148 43 41 chr12 81665199 81666342 -62120113 - L1M4 LINE L1 -4219 2163 1011 771 128 6 98 chr12 81666387 81666498 -62119957 + MER47A DNA MER2_type 56 149 -2174 1872 167 0 3 chr12 81666498 81666798 -62119657 + AluJb SINE Alu 1 299 -13 771 128 6 98 chr12 81666798 81666850 -62119605 + MER47A DNA MER2_type 149 204 -162 441 268 64 77 chr12 81667031 81667299 -62119156 + HERVI LTR ERV1 3798 7138 -647 262 227 107 0 chr12 81667475 81667550 -62118905 + MIR SINE MIR 128 210 -52 1421 136 13 13 chr12 81667559 81667787 -62118668 + AluSg/x SINE Alu 72 299 -13 2444 244 25 2 chr12 81668726 81669243 -62117212 - MLT1F LTR MaLR -13 529 1 2280 62 0 31 chr12 81669663 81669955 -62116500 + AluSq SINE Alu 1 283 -30 281 140 0 0 chr12 81669978 81670028 -62116427 + L1 LINE L1 4276 4325 -1821 203 186 23 0 chr12 81670485 81670528 -62115927 + GA-rich Low_complexity Low_complexity 3 46 0 3358 185 30 6 chr12 81671008 81671666 -62114789 + L1 LINE L1 4303 4976 -1170 799 250 170 51 chr12 81671769 81672105 -62114350 - L2 LINE L2 -1369 1945 1570 2573 235 80 22 chr12 81672106 81672838 -62113617 + L1MD1 LINE L1 4416 5207 -939 2778 89 22 6 chr12 81672838 81673196 -62113259 + THE1B LTR MaLR 1 364 0 2573 235 80 22 chr12 81673196 81673331 -62113124 + L1MD1 LINE L1 5207 5333 -813 1877 166 97 3 chr12 81673342 81673691 -62112764 + MLT1B LTR MaLR 9 390 0 4902 156 27 36 chr12 81673691 81673839 -62112616 + L1MD1 LINE L1 5332 5480 -762 3042 142 76 35 chr12 81673839 81673950 -62112505 - MER73 LTR ERVL 0 644 539 1884 116 6 56 chr12 81673950 81674269 -62112186 + AluSx SINE Alu 1 303 -9 3042 142 76 35 chr12 81674269 81674776 -62111679 - MER73 LTR ERVL -105 539 1 4902 156 27 36 chr12 81674776 81675538 -62110917 + L1MD1 LINE L1 5480 6234 -8 881 211 39 34 chr12 81675660 81675864 -62110591 + MER3 DNA MER1_type 5 209 0 21 57 0 0 chr12 81676580 81676615 -62109840 + AT_rich Low_complexity Low_complexity 1 35 0 1922 200 76 52 chr12 81676781 81677360 -62109095 - HsTC2b DNA Tc2 -2 916 148 901 161 86 19 chr12 81677361 81677523 -62108932 + AluJo SINE Alu 1 173 -139 330 271 85 17 chr12 81677555 81677673 -62108782 - HsTC2b DNA Tc2 -752 163 38 597 181 39 16 chr12 81677699 81677826 -62108629 - MIR SINE MIR -62 200 71 2530 81 3 0 chr12 81678955 81679265 -62107190 + AluSp SINE Alu 1 311 -2 328 368 36 31 chr12 81679550 81679773 -62106682 - L2 LINE L2 -225 3047 2824 527 276 135 98 chr12 81680018 81680165 -62106290 + MLT1L LTR MaLR 6 146 -469 1409 210 133 0 chr12 81680165 81680465 -62105990 - MER58B DNA MER1_type 0 341 2 527 276 135 98 chr12 81680465 81680901 -62105554 + MLT1L LTR MaLR 146 611 -4 274 250 0 109 chr12 81680918 81680988 -62105467 + L1MC4a LINE L1 5795 5846 -1962 1679 154 120 0 chr12 81680988 81681255 -62105200 + AluSx SINE Alu 1 299 -13 274 250 0 109 chr12 81681255 81681312 -62105143 + L1MC4a LINE L1 5846 5908 -1900 185 347 0 14 chr12 81681814 81681886 -62104569 + L3 LINE CR1 594 664 -913 259 313 127 12 chr12 81681997 81682163 -62104292 + L3b LINE CR1 1309 1493 -90 309 318 61 40 chr12 81682177 81682205 -62104250 - MIR3 SINE MIR -14 194 168 2128 125 3 0 chr12 81682205 81682508 -62103947 + AluSx SINE Alu 1 304 -8 309 318 61 40 chr12 81682508 81682627 -62103828 - MIR3 SINE MIR -40 168 44 222 253 187 0 chr12 81683949 81684024 -62102431 - MIR SINE MIR -142 120 32 2033 95 73 0 chr12 81684365 81684638 -62101817 - AluSg SINE Alu -17 293 1 1760 174 0 3 chr12 81687146 81687440 -62099015 - AluJb SINE Alu -19 293 1 395 251 147 12 chr12 81687781 81687944 -62098511 + MIR SINE MIR 14 198 -64 479 275 82 43 chr12 81688051 81688176 -62098279 + MIR SINE MIR 21 140 -122 2117 142 3 0 chr12 81688176 81688487 -62097968 + AluJb SINE Alu 1 312 0 479 275 82 43 chr12 81688487 81688594 -62097861 + MIR SINE MIR 140 262 0 324 291 165 39 chr12 81689045 81689076 -62097379 + MIR SINE MIR 2 28 -234 2154 91 39 0 chr12 81689076 81689362 -62097093 + AluSp SINE Alu 1 297 -16 324 291 165 39 chr12 81689362 81689536 -62096919 + MIR SINE MIR 28 233 -29 371 316 158 20 chr12 81689680 81689832 -62096623 + MIR3 SINE MIR 30 202 -6 2216 103 0 3 chr12 81690498 81690798 -62095657 - AluSq SINE Alu -14 299 1 209 176 0 20 chr12 81690855 81690906 -62095549 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 28 71 0 0 chr12 81691064 81691120 -62095335 + AT_rich Low_complexity Low_complexity 1 56 0 830 244 124 0 chr12 81691422 81691647 -62094808 + MIR SINE MIR 8 260 -2 304 194 143 20 chr12 81691710 81691808 -62094647 + HAL1 LINE L1 2365 2474 -33 2152 86 38 0 chr12 81692094 81692386 -62094069 + AluSp SINE Alu 1 303 -10 23 33 0 0 chr12 81692584 81692614 -62093841 + AT_rich Low_complexity Low_complexity 1 30 0 295 286 87 46 chr12 81693230 81693426 -62093029 - MLT1K LTR MaLR -7 581 378 498 158 184 26 chr12 81693489 81693603 -62092852 - MIR SINE MIR -30 232 101 3055 162 39 50 chr12 81693723 81693974 -62092481 - L1MC1 LINE L1 0 6333 6081 2256 97 0 39 chr12 81693974 81694283 -62092172 - AluSc SINE Alu -12 297 1 1881 109 17 40 chr12 81694293 81694595 -62091860 - AluSq SINE Alu -17 296 2 3055 162 39 50 chr12 81694595 81694949 -62091506 - L1MC1 LINE L1 -261 6072 5724 427 313 50 22 chr12 81694950 81695132 -62091323 - MIR SINE MIR -71 191 5 535 184 10 10 chr12 81695406 81695504 -62090951 + AluJ/FLAM SINE Alu 2 99 -213 675 280 150 27 chr12 81695666 81695686 -62090769 + L1ME3A LINE L1 5471 5487 -683 2236 80 0 42 chr12 81695686 81695999 -62090456 + AluY SINE Alu 3 302 -9 675 280 150 27 chr12 81695999 81696221 -62090234 + L1ME3A LINE L1 5487 5680 -490 1989 203 34 5 chr12 81696221 81696606 -62089849 + MSTD LTR MaLR 1 396 0 675 280 150 27 chr12 81696606 81696769 -62089686 + L1ME3A LINE L1 5680 5927 -243 1460 202 141 27 chr12 81697537 81697947 -62088508 - MER31B LTR ERV1 0 543 9 2117 112 59 59 chr12 81698070 81698445 -62088010 - THE1C LTR MaLR 0 375 1 1662 215 108 26 chr12 81698499 81698960 -62087495 + MLT1D LTR MaLR 3 501 -4 7941 106 51 3 chr12 81698995 81700228 -62086227 + HSMAR2 DNA Mariner 10 1301 -1 226 234 297 0 chr12 81700228 81700292 -62086163 - Tigger5 DNA MER2_type -3 2320 2238 247 167 24 0 chr12 81700303 81700345 -62086110 - Tigger5 DNA MER2_type -2268 55 13 366 131 0 33 chr12 81700345 81700406 -62086049 - Tigger5 DNA MER2_type 0 2323 2265 206 360 106 49 chr12 81700457 81700807 -62085648 - L2 LINE L2 -181 3091 2720 1215 211 67 20 chr12 81700950 81701114 -62085341 - AluJo SINE Alu 0 312 157 1773 133 91 0 chr12 81701114 81701400 -62085055 - AluSx SINE Alu 0 312 1 1215 211 67 20 chr12 81701400 81701533 -62084922 - AluJo SINE Alu -155 157 1 291 71 0 0 chr12 81702450 81702492 -62083963 + (TC)n Simple_repeat Simple_repeat 2 43 0 950 257 146 39 chr12 81702716 81702774 -62083681 - MLT1I LTR MaLR -2 407 357 995 176 6 0 chr12 81702774 81702939 -62083516 + FAM SINE Alu 1 166 -9 950 257 146 39 chr12 81702939 81703242 -62083213 - MLT1I LTR MaLR -52 357 7 2349 81 7 3 chr12 81703533 81703840 -62082615 - AluSp SINE Alu -4 309 2 262 301 107 26 chr12 81703845 81704030 -62082425 + L1ME LINE L1 5445 5653 -468 340 288 88 32 chr12 81704100 81704225 -62082230 - L2 LINE L2 0 3272 3141 2121 164 46 0 chr12 81704594 81705010 -62081445 + L1MC3 LINE L1 7351 7785 0 2022 125 0 7 chr12 81705064 81705360 -62081095 + AluSx SINE Alu 1 294 -18 2271 126 52 0 chr12 81705570 81705958 -62080497 + L1MA5 LINE L1 5893 6300 0 1584 229 56 25 chr12 81706509 81707046 -62079409 - MER21B LTR ERV1 -162 701 98 354 250 11 22 chr12 81707085 81707177 -62079278 - MER21B LTR ERV1 -767 96 6 21 0 0 0 chr12 81707562 81707583 -62078872 + AT_rich Low_complexity Low_complexity 1 21 0 1043 222 27 73 chr12 81707701 81708030 -62078425 + MER93b LTR ERV1 49 362 -11 1993 135 3 0 chr12 81708086 81708374 -62078081 + AluSx SINE Alu 1 289 -23 2201 94 3 3 chr12 81708734 81709032 -62077423 - AluY SINE Alu -13 298 1 22 0 0 0 chr12 81709080 81709102 -62077353 + AT_rich Low_complexity Low_complexity 1 22 0 715 176 24 83 chr12 81709967 81710065 -62076390 - MER96B DNA MER1_type? -181 236 155 216 0 0 0 chr12 81710065 81710089 -62076366 + (TG)n Simple_repeat Simple_repeat 2 25 0 715 176 24 83 chr12 81710089 81710195 -62076260 - MER96B DNA MER1_type? -262 155 44 35 63 0 0 chr12 81711336 81711399 -62075056 + AT_rich Low_complexity Low_complexity 1 63 0 2135 121 3 0 chr12 81711830 81712135 -62074320 + AluY SINE Alu 1 306 -5 2144 96 0 4 chr12 81712508 81712788 -62073667 + AluSq SINE Alu 1 279 -34 333 0 0 0 chr12 81712789 81712826 -62073629 + (CA)n Simple_repeat Simple_repeat 1 37 0 708 207 0 15 chr12 81713276 81713411 -62073044 + AluJo SINE Alu 1 133 -169 2546 137 36 10 chr12 81713425 81713842 -62072613 - MSTA LTR MaLR 0 428 1 974 182 0 0 chr12 81713842 81714007 -62072448 + AluJo SINE Alu 141 305 -7 1178 111 213 0 chr12 81714654 81714879 -62071576 - MER46B DNA MER2_type 0 236 89 833 333 24 24 chr12 81714981 81715393 -62071062 + HERVI LTR ERV1 7236 7647 -138 29 0 0 0 chr12 81716083 81716112 -62070343 + AT_rich Low_complexity Low_complexity 1 29 0 597 286 27 45 chr12 81716715 81716935 -62069520 - MIR SINE MIR -10 252 37 898 196 12 0 chr12 81717220 81717393 -62069062 - AluJb SINE Alu -20 292 118 989 224 0 14 chr12 81717499 81717722 -62068733 - AluJo SINE Alu -92 220 1 660 197 0 0 chr12 81719258 81719375 -62067080 + FLAM_C SINE Alu 1 117 -26 23 0 0 0 chr12 81719920 81719943 -62066512 + AT_rich Low_complexity Low_complexity 1 23 0 600 238 148 110 chr12 81721628 81722145 -62064310 - MLT1H1 LTR MaLR -8 547 14 186 43 0 0 chr12 81722482 81722505 -62063950 + (ATG)n Simple_repeat Simple_repeat 2 24 0 239 225 112 34 chr12 81722683 81722708 -62063747 - MER46A DNA MER2_type -66 170 139 573 172 71 0 chr12 81722708 81722807 -62063648 + Tigger4(Zombi) DNA MER2_type 1 106 -2625 193 145 157 157 chr12 81723085 81723168 -62063287 + L2 LINE L2 3231 3313 0 21 0 0 0 chr12 81723507 81723528 -62062927 + AT_rich Low_complexity Low_complexity 1 21 0 315 157 0 0 chr12 81725167 81725237 -62061218 - L1PB4 LINE L1 -1 6155 6086 1622 108 89 55 chr12 81725237 81725535 -62060920 + L1P5 LINE L1 5298 5609 -547 2220 113 3 3 chr12 81725535 81725844 -62060611 + AluSg SINE Alu 1 309 -1 1622 108 89 55 chr12 81725844 81725870 -62060585 + L1P5 LINE L1 5609 5633 -523 21 36 0 0 chr12 81726193 81726221 -62060234 + AT_rich Low_complexity Low_complexity 1 28 0 864 135 8 0 chr12 81726222 81726355 -62060100 - FRAM SINE Alu -46 130 1 2131 129 0 3 chr12 81727698 81728008 -62058447 - AluSg SINE Alu -1 309 1 1837 149 10 7 chr12 81728013 81728302 -62058153 - AluJb SINE Alu -22 290 1 2935 193 38 22 chr12 81728755 81729356 -62057099 + MER82 DNA MER2_type 2 612 -41 269 262 34 87 chr12 81729637 81729786 -62056669 - MIR SINE MIR -119 143 3 596 278 105 29 chr12 81729799 81729869 -62056586 + L1ME4a LINE L1 5547 5610 -511 2493 59 0 3 chr12 81729869 81730175 -62056280 + AluY SINE Alu 1 305 -6 596 278 105 29 chr12 81730175 81730446 -62056009 + L1ME4a LINE L1 5610 5914 -207 281 277 50 25 chr12 81730454 81730613 -62055842 + L1ME4a LINE L1 5956 6118 -3 279 283 78 52 chr12 81731216 81731407 -62055048 - L1M4 LINE L1 -1335 4811 4616 1233 150 30 0 chr12 81731417 81731617 -62054838 - AluSg/x SINE Alu -16 294 89 258 207 0 0 chr12 81731872 81731930 -62054525 - L1M4 LINE L1 -2915 3231 3174 327 296 148 20 chr12 81732104 81732307 -62054148 - L1M4 LINE L1 -3527 2619 2391 1101 180 11 0 chr12 81732541 81732730 -62053725 - AluSg/x SINE Alu -15 297 107 * 1168 149 0 0 chr12 81732729 81732897 -62053558 + AluJo SINE Alu 115 282 -30 316 299 41 66 chr12 81733112 81733211 -62053244 - HAL1b LINE L1 -1152 196 102 662 202 0 8 chr12 81733211 81733353 -62053102 - FLAM_A SINE Alu 0 142 2 316 299 41 66 chr12 81733353 81733449 -62053006 - HAL1b LINE L1 -1246 102 5 22 0 0 0 chr12 81733562 81733584 -62052871 + AT_rich Low_complexity Low_complexity 1 22 0 1306 223 29 47 chr12 81734262 81734643 -62051812 - MLT1A2 LTR MaLR 0 374 1 487 295 95 29 chr12 81735189 81735399 -62051056 - MIR SINE MIR -10 252 29 926 271 91 55 chr12 81735545 81736169 -62050286 + HAL1 LINE L1 1845 2491 -16 26 0 0 0 chr12 81736896 81736922 -62049533 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 81737094 81737115 -62049340 + AT_rich Low_complexity Low_complexity 1 21 0 181 345 35 0 chr12 81738461 81738519 -62047936 + L2 LINE L2 3254 3313 0 1058 310 127 30 chr12 81739809 81740688 -62045767 - L2 LINE L2 0 3313 2328 2362 80 13 0 chr12 81741164 81741463 -62044992 + AluSp SINE Alu 1 303 -10 29 0 0 0 chr12 81742846 81742875 -62043580 + AT_rich Low_complexity Low_complexity 1 29 0 2039 108 0 32 chr12 81744000 81744314 -62042141 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 81744408 81744430 -62042025 + AT_rich Low_complexity Low_complexity 1 22 0 209 237 66 53 chr12 81744972 81745048 -62041407 + L3 LINE CR1 1024 1100 -477 26 0 0 0 chr12 81745764 81745790 -62040665 + AT_rich Low_complexity Low_complexity 1 26 0 1086 128 12 0 chr12 81746145 81746309 -62040146 + AluJb SINE Alu 134 299 -13 1089 134 45 104 chr12 81746495 81746763 -62039692 + L1MD1 LINE L1 5991 6242 0 339 323 161 9 chr12 81747059 81747276 -62039179 + L3 LINE CR1 821 1070 -507 567 200 113 31 chr12 81747276 81747436 -62039019 - AluJb SINE Alu -7 305 133 1105 138 88 50 chr12 81797447 81797730 -61988725 + L1M1 LINE L1 2282 2575 -4990 31 26 0 0 chr12 81797756 81797794 -61988661 + AT_rich Low_complexity Low_complexity 1 38 0 1948 164 3 0 chr12 81797822 81798114 -61988341 - AluJo SINE Alu -18 294 2 1495 168 38 50 chr12 81798114 81798514 -61987941 + L1MEc LINE L1 1855 2249 -4147 2383 79 3 7 chr12 81799164 81799467 -61986988 + AluSq SINE Alu 1 302 -11 212 0 36 0 chr12 81799612 81799640 -61986815 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 715 306 50 4 chr12 81800296 81800554 -61985901 + MLT1K LTR MaLR 2 271 -317 207 0 0 0 chr12 81800875 81800898 -61985557 + (TTG)n Simple_repeat Simple_repeat 2 24 0 205 195 0 0 chr12 81801033 81801074 -61985381 + A-rich Low_complexity Low_complexity 1 41 0 3257 131 43 75 chr12 81802459 81802494 -61983961 + MER41B LTR ERV1 1 36 -599 2279 39 70 3 chr12 81802494 81802778 -61983677 - AluY SINE Alu -8 303 1 3257 131 43 75 chr12 81802778 81802931 -61983524 + MER41B LTR ERV1 36 192 -443 2027 147 0 0 chr12 81802931 81803245 -61983210 + AluSq SINE Alu 1 314 0 3257 131 43 75 chr12 81803245 81803710 -61982745 + MER41B LTR ERV1 192 635 0 23 0 0 0 chr12 81803749 81803772 -61982683 + AT_rich Low_complexity Low_complexity 1 23 0 2342 90 72 17 chr12 81803878 81804223 -61982232 + THE1B LTR MaLR 1 364 0 2295 84 3 0 chr12 81804494 81804792 -61981663 - AluY SINE Alu -11 300 2 1000 285 146 15 chr12 81805161 81805683 -61980772 + MLT1G1 LTR MaLR 1 590 -5 2598 110 62 26 chr12 81805684 81805724 -61980731 + MER57B LTR ERV1 1 38 -396 2381 94 3 0 chr12 81805724 81806033 -61980422 - AluSq SINE Alu -3 310 1 2598 110 62 26 chr12 81806033 81806411 -61980044 + MER57B LTR ERV1 38 434 0 367 200 113 0 chr12 81806785 81806865 -61979590 + L2 LINE L2 3225 3313 0 252 200 40 10 chr12 81806901 81807001 -61979454 + L1ME4a LINE L1 6007 6109 -12 255 83 0 0 chr12 81807661 81807697 -61978758 + MLT1D LTR MaLR 19 54 -451 904 251 175 60 chr12 81807883 81808380 -61978075 - MER41C LTR ERV1 0 554 1 622 146 0 10 chr12 81808425 81808528 -61977927 + AluJb SINE Alu 1 102 -210 1055 146 34 22 chr12 81808580 81808758 -61977697 + AluJb SINE Alu 108 287 -25 1090 198 36 12 chr12 81808870 81809123 -61977332 + MLT1D LTR MaLR 247 505 0 341 65 0 0 chr12 81809268 81809314 -61977141 + MADE1 DNA Mariner 35 80 0 819 184 23 17 chr12 81809482 81809656 -61976799 + AluSg/x SINE Alu 135 309 -1 339 274 44 9 chr12 81809788 81809901 -61976554 - MIR SINE MIR -56 206 90 554 294 13 20 chr12 81810122 81810275 -61976180 + MER5B DNA MER1_type 1 152 -26 333 0 0 0 chr12 81810546 81810583 -61975872 + (TA)n Simple_repeat Simple_repeat 2 38 0 271 290 148 7 chr12 81811013 81811168 -61975287 - Charlie8 DNA MER1_type -2235 182 6 681 219 0 8 chr12 81811272 81811400 -61975055 - FLAM_A SINE Alu -6 127 1 258 252 184 20 chr12 81812403 81812550 -61973905 - MIR3 SINE MIR -10 198 28 2017 232 52 9 chr12 81813284 81814021 -61972434 + MER21B LTR ERV1 9 812 -51 251 300 0 0 chr12 81814167 81814227 -61972228 + CT-rich Low_complexity Low_complexity 1 60 0 312 283 147 21 chr12 81814227 81814418 -61972037 - L2 LINE L2 -1 3312 3098 1937 147 10 23 chr12 81814660 81814967 -61971488 + AluSx SINE Alu 1 303 -9 239 316 189 6 chr12 81816405 81816563 -61969892 - MIR3 SINE MIR -57 151 4 937 184 60 9 chr12 81816723 81816941 -61969514 - L1MA9 LINE L1 -40 6272 6044 2202 88 23 7 chr12 81817312 81817618 -61968837 - AluY SINE Alu 0 311 1 371 278 83 8 chr12 81817620 81817753 -61968702 - MIR SINE MIR -62 146 6 6898 43 7 2 chr12 81817754 81818645 -61967810 - L1PA6 LINE L1 -3 6151 5257 482 333 72 0 chr12 81818676 81818814 -61967641 - L2 LINE L2 -2 3270 3123 505 240 43 106 chr12 81819059 81819267 -61967188 + MER102b DNA MER1_type 118 312 -29 697 262 147 0 chr12 81819553 81819832 -61966623 - LTR50 LTR ERVL 0 795 476 384 223 363 14 chr12 81819838 81820053 -61966402 - LTR50 LTR ERVL -505 290 1 331 340 114 33 chr12 81820548 81821115 -61965340 + L2 LINE L2 2477 3085 -187 213 94 0 0 chr12 81821356 81821388 -61965067 + (TC)n Simple_repeat Simple_repeat 1 32 0 1504 42 0 11 chr12 81821551 81821741 -61964714 + AluYb8 SINE Alu 130 317 -1 301 150 3 0 chr12 81822320 81822378 -61964077 - AluJ/FLAM SINE Alu -240 62 14 1378 199 48 45 chr12 81822384 81822740 -61963715 - MSTD LTR MaLR -39 357 1 6081 199 46 44 chr12 81822762 81822982 -61963473 - MER45R DNA AcHobo 0 1581 1363 2529 63 0 0 chr12 81822982 81823284 -61963171 - AluY SINE Alu -9 302 1 6081 199 46 44 chr12 81823284 81824641 -61961814 - MER45R DNA AcHobo -218 1363 1 2207 184 21 9 chr12 81824840 81825259 -61961196 - MSTB LTR MaLR -2 424 1 297 254 0 0 chr12 81825371 81825442 -61961013 + LTR16C LTR ERVL 410 480 -11 552 251 183 26 chr12 81825567 81825963 -61960492 - L2 LINE L2 0 3313 2787 335 216 81 36 chr12 81827169 81827280 -61959175 + L2 LINE L2 3197 3312 -1 391 337 99 40 chr12 81827719 81828113 -61958342 + MLT1K LTR MaLR 118 543 -45 2076 86 14 0 chr12 81828113 81828412 -61958043 - AluY SINE Alu 0 303 1 391 337 99 40 chr12 81828412 81828461 -61957994 + MLT1K LTR MaLR 543 588 0 210 71 0 0 chr12 81828525 81828553 -61957902 + (T)n Simple_repeat Simple_repeat 1 28 0 475 299 88 29 chr12 81828622 81829509 -61956946 - L1MEc LINE L1 -2946 3269 2356 518 220 29 30 chr12 81829595 81829837 -61956618 + L1MEc LINE L1 2095 2296 -3919 349 327 141 47 chr12 81830450 81830542 -61955913 - L2 LINE L2 -213 3059 2977 1187 182 27 45 chr12 81830542 81830872 -61955583 - MER33 DNA MER1_type 0 324 1 349 327 141 47 chr12 81830872 81830954 -61955501 - L2 LINE L2 -295 2977 2904 309 26 0 0 chr12 81830954 81830992 -61955463 + (TG)n Simple_repeat Simple_repeat 2 39 0 349 327 141 47 chr12 81830992 81831502 -61954953 - L2 LINE L2 -368 2904 2295 260 308 103 0 chr12 81831897 81832004 -61954451 - LTR33 LTR ERVL -305 216 99 236 234 19 113 chr12 81832476 81832593 -61953862 + L1MC/D LINE L1 5308 5434 -2374 254 29 29 0 chr12 81832593 81832628 -61953827 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1426 135 164 4 chr12 81832630 81832874 -61953581 - AluSx SINE Alu -29 283 1 236 234 19 113 chr12 81832874 81832931 -61953524 + L1MC/D LINE L1 5435 5466 -2342 368 302 132 0 chr12 81833328 81833510 -61952945 - L1ME LINE L1 -376 5745 5540 24 0 0 0 chr12 81833645 81833669 -61952786 + AT_rich Low_complexity Low_complexity 1 24 0 658 250 4 62 chr12 81834122 81834208 -61952247 + L1MEc LINE L1 1528 1617 -4779 2176 112 0 3 chr12 81834208 81834503 -61951952 + AluSg SINE Alu 1 294 -16 658 250 4 62 chr12 81834503 81834688 -61951767 + L1MEc LINE L1 1617 1783 -4613 * 3746 231 26 41 chr12 81834680 81834871 -61951584 + L1M1 LINE L1 12 204 -7361 2086 125 36 13 chr12 81834871 81835176 -61951279 + AluSx SINE Alu 1 312 0 3746 231 26 41 chr12 81835176 81836479 -61949976 + L1M1 LINE L1 204 2162 -5403 25 0 0 0 chr12 81836605 81836630 -61949825 + GC_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr12 81836630 81836662 -61949793 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr12 81836759 81836790 -61949665 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 81836856 81836879 -61949576 + AT_rich Low_complexity Low_complexity 1 23 0 203 305 0 0 chr12 81837768 81837827 -61948628 + CT-rich Low_complexity Low_complexity 2 60 0 1488 110 30 13 chr12 81838109 81838345 -61948110 - L1PA10 LINE L1 -4 6164 5925 297 316 60 8 chr12 81838651 81838768 -61947687 - L2 LINE L2 -11 3261 3139 216 0 0 0 chr12 81838866 81838890 -61947565 + (A)n Simple_repeat Simple_repeat 1 24 0 209 81 0 27 chr12 81838925 81838962 -61947493 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 1007 166 0 12 chr12 81839005 81839168 -61947287 + AluJb SINE Alu 133 293 -19 2501 107 42 8 chr12 81839232 81839617 -61946838 + MER48 LTR ERV1 1 398 0 1423 211 39 49 chr12 81839889 81840114 -61946341 + L1ME1 LINE L1 4632 4858 -1288 2393 69 96 0 chr12 81840114 81840446 -61946009 - L1PA10 LINE L1 -11 6157 5794 1423 211 39 49 chr12 81840446 81840707 -61945748 + L1ME1 LINE L1 4858 5113 -1033 1447 189 58 84 chr12 81840712 81841129 -61945326 + MLT2D LTR ERVL 1 406 -8 611 211 134 45 chr12 81841141 81841274 -61945181 + L1ME1 LINE L1 5123 5243 -903 1789 148 16 35 chr12 81841274 81841584 -61944871 + AluJb SINE Alu 1 304 -8 611 211 134 45 chr12 81841584 81841696 -61944759 + L1ME1 LINE L1 5243 5390 -756 442 227 25 61 chr12 81841696 81841859 -61944596 - MER67A LTR ERV1 -109 434 278 * 1306 233 75 33 chr12 81841831 81842091 -61944364 - MER67B LTR ERV1 -243 418 226 311 181 0 24 chr12 81842091 81842174 -61944281 + L1MA6 LINE L1 6220 6300 0 1306 233 75 33 chr12 81842174 81842410 -61944045 - MER67B LTR ERV1 -435 226 1 447 227 0 0 chr12 81842410 81842490 -61943965 - MER67A LTR ERV1 -463 80 1 1169 249 119 8 chr12 81842491 81843097 -61943358 + L1ME1 LINE L1 5402 6161 -5 597 212 114 43 chr12 81843225 81843409 -61943046 - MER58C DNA MER1_type 0 215 19 181 245 132 0 chr12 81843552 81843605 -61942850 - MIR SINE MIR -80 128 69 427 192 25 25 chr12 81844055 81844175 -61942280 + L1MA10 LINE L1 6214 6333 -1 37 81 0 0 chr12 81844282 81844368 -61942087 + AT_rich Low_complexity Low_complexity 1 86 0 240 100 0 0 chr12 81846071 81846111 -61940344 + (CA)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr12 81846770 81846795 -61939660 + AT_rich Low_complexity Low_complexity 1 25 0 2488 216 66 73 chr12 81846883 81847682 -61938773 - MER21B LTR ERV1 -58 805 12 333 202 17 0 chr12 81847682 81847805 -61938650 + CT-rich Low_complexity Low_complexity 1 125 0 1646 201 30 3 chr12 81847805 81848109 -61938346 - AluJb SINE Alu 0 312 1 28 0 0 26 chr12 81848223 81848248 -61938207 + AT_rich Low_complexity Low_complexity 1 26 -12 2522 48 3 13 chr12 81848248 81848562 -61937893 - AluY SINE Alu 0 311 1 28 0 0 26 chr12 81848562 81848575 -61937880 + AT_rich Low_complexity Low_complexity 26 38 0 363 92 62 0 chr12 81848706 81848771 -61937684 - MADE1 DNA Mariner -9 71 3 386 261 185 83 chr12 81848803 81849224 -61937231 + L2 LINE L2 2815 3278 -35 881 293 84 6 chr12 81849427 81849782 -61936673 - MLT1J2 LTR MaLR -47 403 21 250 252 67 84 chr12 81850493 81850612 -61935843 + MIR SINE MIR 139 255 -7 377 287 65 0 chr12 81850826 81850934 -61935521 + MER91C DNA MER1_type 1 115 -25 2299 100 3 0 chr12 81852967 81853276 -61933179 - AluSq SINE Alu -3 310 1 213 302 0 16 chr12 81853628 81853691 -61932764 + MIR SINE MIR 52 113 -149 325 165 0 47 chr12 81853691 81853776 -61932679 + CT-rich Low_complexity Low_complexity 3 83 0 1801 158 65 0 chr12 81853770 81854159 -61932296 - AluSx SINE Alu 0 408 1 433 213 116 65 chr12 81854231 81854386 -61932069 - MIR SINE MIR 0 262 100 955 288 133 29 chr12 81854389 81855044 -61931411 + L2 LINE L2 2587 3313 0 308 263 137 0 chr12 81855037 81855132 -61931323 - MIR SINE MIR -153 109 2 * 1736 197 3 0 chr12 81855315 81855615 -61930840 - AluJo SINE Alu -10 302 2 180 0 0 0 chr12 81856465 81856485 -61929970 + (A)n Simple_repeat Simple_repeat 1 20 0 345 24 0 0 chr12 81856846 81856888 -61929567 + (TG)n Simple_repeat Simple_repeat 1 42 0 427 226 201 12 chr12 81857016 81857180 -61929275 - MIR SINE MIR -1 261 67 363 301 56 0 chr12 81857444 81857587 -61928868 + MIR SINE MIR 49 199 -63 2804 19 0 0 chr12 81857587 81857901 -61928554 + AluYb8 SINE Alu 1 314 -4 2111 127 10 0 chr12 81858449 81858757 -61927698 - AluSx SINE Alu -1 311 1 253 284 22 52 chr12 81858796 81858930 -61927525 - MLT1J LTR MaLR -4 507 378 233 324 0 0 chr12 81859010 81859078 -61927377 - MLT1J LTR MaLR -333 178 111 245 314 76 19 chr12 81859148 81859253 -61927202 + L2 LINE L2 3203 3313 0 987 261 60 43 chr12 81861192 81861724 -61924731 + L1MC5 LINE L1 7179 7719 -242 2003 133 3 25 chr12 81862132 81862448 -61924007 - AluSx SINE Alu -3 309 1 2215 107 0 10 chr12 81863620 81863910 -61922545 - AluSx SINE Alu -25 287 1 1792 170 7 0 chr12 81863913 81864202 -61922253 - AluSx SINE Alu -19 293 3 265 318 101 0 chr12 81864236 81864384 -61922071 + L1MC5 LINE L1 7695 7857 -104 22 0 0 0 chr12 81864412 81864434 -61922021 + AT_rich Low_complexity Low_complexity 1 22 0 1914 80 36 29 chr12 81864434 81864709 -61921746 - AluY SINE Alu -31 280 4 375 41 0 0 chr12 81864790 81864839 -61921616 + (CA)n Simple_repeat Simple_repeat 2 50 0 235 294 160 25 chr12 81866388 81866507 -61919948 + L2 LINE L2 3175 3309 -4 225 228 20 50 chr12 81867409 81867510 -61918945 + LTR67 LTR ERVL 460 557 0 218 412 25 8 chr12 81867539 81867658 -61918797 + MIR SINE MIR 19 139 -69 573 240 66 22 chr12 81868631 81868814 -61917641 + L2 LINE L2 2713 2903 -411 572 297 109 18 chr12 81869135 81869364 -61917091 - MIR SINE MIR 0 262 13 210 292 46 0 chr12 81870933 81870998 -61915457 + L2 LINE L2 3205 3272 0 14904 188 25 9 chr12 81871242 81876600 -61909855 - L1PB1 LINE L1 -32 6835 1392 275 272 22 22 chr12 81877264 81877356 -61909099 - L3 LINE CR1 -148 1429 1338 383 355 33 62 chr12 81877397 81877670 -61908785 + L3 LINE CR1 1307 1571 -6 453 313 20 7 chr12 81877680 81877827 -61908628 + L2 LINE L2 2255 2403 -911 991 256 46 55 chr12 81877905 81878272 -61908183 + L2 LINE L2 2941 3304 -9 2283 119 3 0 chr12 81879087 81879398 -61907057 - AluSx SINE Alu 0 312 1 600 320 52 9 chr12 81879682 81880033 -61906422 + L1ME4a LINE L1 5563 5939 -182 23 0 0 0 chr12 81880144 81880167 -61906288 + AT_rich Low_complexity Low_complexity 1 23 0 35 71 0 0 chr12 81880303 81880373 -61906082 + AT_rich Low_complexity Low_complexity 1 70 0 13399 205 46 35 chr12 81880393 81883186 -61903269 - L1MA9 LINE L1 0 7731 4970 2282 100 3 0 chr12 81883186 81883486 -61902969 - AluSp SINE Alu -12 301 1 13399 205 46 35 chr12 81883486 81885139 -61901316 - L1MA9 LINE L1 -2761 4970 3290 1992 143 10 0 chr12 81885139 81885432 -61901023 - AluSx SINE Alu -16 296 1 13399 205 46 35 chr12 81885432 81886445 -61900010 - L1MA9 LINE L1 -4441 3290 2290 204 238 0 0 chr12 81886691 81886733 -61899722 + A-rich Low_complexity Low_complexity 4 45 0 188 283 87 11 chr12 81886979 81887071 -61899384 + MIR3 SINE MIR 88 186 -22 2115 124 0 3 chr12 81887556 81887847 -61898608 - AluSq SINE Alu -21 292 3 189 0 0 0 chr12 81887854 81887875 -61898580 + (T)n Simple_repeat Simple_repeat 1 21 0 1456 264 229 20 chr12 81887903 81888634 -61897821 - L1MA9 LINE L1 -6147 1342 460 441 277 77 116 chr12 81888757 81889047 -61897408 + LTR16A1 LTR ERVL 88 342 -115 2364 97 7 0 chr12 81889047 81889357 -61897098 - AluSq SINE Alu -1 312 1 441 277 77 116 chr12 81889357 81889461 -61896994 + LTR16A1 LTR ERVL 342 449 -8 349 250 0 0 chr12 81890852 81890928 -61895527 + MIR SINE MIR 183 258 -4 823 205 135 58 chr12 81890933 81891177 -61895278 - MER46C DNA MER2_type -1 337 62 2061 128 0 0 chr12 81891177 81891479 -61894976 + AluSx SINE Alu 1 302 0 823 205 135 58 chr12 81891479 81891545 -61894910 - MER46C DNA MER2_type -276 62 2 3183 268 103 33 chr12 81892088 81893715 -61892740 - L1MEc LINE L1 -4583 1813 72 403 270 129 0 chr12 81893719 81893882 -61892573 + MIR SINE MIR 65 248 -14 180 0 0 0 chr12 81893994 81894014 -61892441 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 258 247 25 12 chr12 81894282 81894363 -61892092 - MLT1L LTR MaLR -10 605 524 309 206 78 99 chr12 81894554 81894695 -61891760 - MLT1L LTR MaLR -336 279 142 517 188 0 0 chr12 81894817 81894902 -61891553 - Tigger5 DNA MER2_type 0 2323 2239 1776 149 13 23 chr12 81895540 81895841 -61890614 - AluJb SINE Alu -14 298 1 230 91 0 0 chr12 81895941 81895974 -61890481 - L1MB1 LINE L1 -2198 3948 3916 6446 162 23 48 chr12 81895981 81898260 -61888195 + L1MB1 LINE L1 3943 6168 0 826 279 18 31 chr12 81898875 81899104 -61887351 - MIR SINE MIR -25 237 12 208 284 241 25 chr12 81899188 81899316 -61887139 + MIR SINE MIR 9 151 -67 1617 130 25 29 chr12 81899316 81899590 -61886865 - Tigger5 DNA MER2_type 0 2323 2051 1444 187 11 42 chr12 81899590 81899944 -61886511 + MSTD LTR MaLR 1 396 0 542 155 0 52 chr12 81899953 81900050 -61886405 - Tigger5 DNA MER2_type -2231 92 1 389 280 17 25 chr12 81900090 81900208 -61886247 - MER5A DNA MER1_type -72 117 1 2144 110 7 13 chr12 81900567 81900876 -61885579 + AluSg SINE Alu 1 307 -3 284 299 364 0 chr12 81901655 81901809 -61884646 + MIR SINE MIR 23 232 -30 584 314 58 4 chr12 81902052 81902294 -61884161 + MLT1L LTR MaLR 352 606 -9 258 232 29 29 chr12 81903132 81903201 -61883254 + MLT1J LTR MaLR 95 163 -348 249 292 45 11 chr12 81903139 81903228 -61883227 + LTR67 LTR ERVL 106 197 -360 * 292 270 97 26 chr12 81903492 81903609 -61882846 - MIR SINE MIR -68 140 24 284 227 45 34 chr12 81903630 81903718 -61882737 - L2 LINE L2 -64 3249 3161 4424 104 28 18 chr12 81903728 81904401 -61882054 + LTR17 LTR ERV1 1 780 0 459 0 0 0 chr12 81904448 81904499 -61881956 + (TG)n Simple_repeat Simple_repeat 1 51 0 392 314 8 0 chr12 81904503 81904621 -61881834 - L2 LINE L2 -250 3063 2945 26 50 0 0 chr12 81904778 81904818 -61881637 + AT_rich Low_complexity Low_complexity 1 40 0 1666 216 24 35 chr12 81904922 81905344 -61881111 - MLT1C LTR MaLR 0 467 51 1101 194 114 0 chr12 81905576 81905777 -61880678 - MER58A DNA MER1_type 0 224 1 237 83 0 0 chr12 81906838 81906874 -61879581 + (TC)n Simple_repeat Simple_repeat 1 36 0 1909 167 0 0 chr12 81906874 81907161 -61879294 - AluJb SINE Alu -25 287 1 463 333 48 5 chr12 81907744 81907954 -61878501 - MIR SINE MIR -42 220 2 247 274 0 14 chr12 81908070 81908143 -61878312 - MLT1J2 LTR MaLR 0 450 379 249 167 340 38 chr12 81908249 81908362 -61878093 - MIR SINE MIR -62 146 13 24 32 0 0 chr12 81908699 81908730 -61877725 + AT_rich Low_complexity Low_complexity 1 31 0 1860 126 3 34 chr12 81909191 81909485 -61876970 + AluJb SINE Alu 1 285 -27 489 174 0 0 chr12 81909782 81909868 -61876587 - MLT1H LTR MaLR 0 549 464 282 89 0 0 chr12 81909942 81909987 -61876468 - AluSq SINE Alu -4 299 255 1310 83 12 0 chr12 81909987 81910155 -61876300 - AluSq SINE Alu -143 170 1 1215 271 15 24 chr12 81910222 81910562 -61875893 - MLT1H LTR MaLR -210 339 3 256 318 122 14 chr12 81910630 81910778 -61875677 + MIR SINE MIR 1 150 -58 291 338 34 27 chr12 81911288 81911436 -61875019 + MIR3 SINE MIR 58 206 -2 930 273 77 40 chr12 81911832 81912260 -61874195 + MLT1J1 LTR MaLR 3 446 0 383 217 115 25 chr12 81912265 81912406 -61874049 - MIR SINE MIR -61 147 35 190 262 0 0 chr12 81912585 81912627 -61873828 + MIR SINE MIR 93 134 -74 2564 55 0 3 chr12 81912661 81912969 -61873486 + AluY SINE Alu 1 307 -4 297 235 15 0 chr12 81913102 81913170 -61873285 + MIR SINE MIR 178 246 -16 1883 202 94 66 chr12 81913858 81914675 -61871780 - Charlie2 DNA MER1_type -17 2845 2006 1831 93 4 0 chr12 81914690 81914927 -61871528 - AluSx SINE Alu -16 296 59 826 104 87 0 chr12 81914928 81915043 -61871412 - AluSq/x SINE Alu -188 125 1 570 216 32 8 chr12 81915068 81915193 -61871262 - Charlie2 DNA MER1_type -878 1984 1857 640 276 42 59 chr12 81915200 81915486 -61870969 - Charlie2 DNA MER1_type -2464 318 38 21 0 0 0 chr12 81915779 81915800 -61870655 + AT_rich Low_complexity Low_complexity 1 21 0 685 291 153 10 chr12 81915802 81916097 -61870358 - MLT1I LTR MaLR -5 404 68 466 123 0 0 chr12 81916226 81916291 -61870164 - MER8 DNA MER2_type 0 239 175 * 2899 142 11 5 chr12 81916284 81916727 -61869728 + Tigger2 DNA MER2_type 2273 2718 0 495 309 42 10 chr12 81916845 81917092 -61869363 - L1ME2 LINE L1 -278 5886 5627 297 304 17 26 chr12 81917970 81918085 -61868370 + MLT1L LTR MaLR 497 610 -5 189 0 0 0 chr12 81918199 81918220 -61868235 + (TA)n Simple_repeat Simple_repeat 2 22 0 1072 203 233 51 chr12 81918220 81918390 -61868065 + Tigger6 DNA MER2_type 3 141 -942 2729 36 0 0 chr12 81918390 81918699 -61867756 - AluY SINE Alu -2 309 1 1072 203 233 51 chr12 81918699 81918863 -61867592 + Tigger6 DNA MER2_type 141 398 -685 * 2381 183 66 0 chr12 81918845 81919331 -61867124 + Tigger6b DNA MER2_type 987 1504 -93 411 247 0 0 chr12 81919425 81919502 -61866953 + Tigger6b DNA MER2_type 1521 1597 0 423 312 35 40 chr12 81919642 81919841 -61866614 + MIR3 SINE MIR 2 199 -9 201 375 146 10 chr12 81920100 81920196 -61866259 - L2 LINE L2 -25 3247 3139 356 195 0 49 chr12 81920424 81920506 -61865949 - LTR33A LTR ERVL -9 514 437 243 315 109 0 chr12 81920759 81920851 -61865604 - MLT2E LTR ERVL -495 133 32 1993 117 38 14 chr12 81921030 81921149 -61865306 + AluSg SINE Alu 1 116 -194 2161 57 0 0 chr12 81921149 81921411 -61865044 + AluY SINE Alu 50 311 0 1993 117 38 14 chr12 81921411 81921582 -61864873 + AluSg SINE Alu 116 298 -12 1355 164 56 49 chr12 81922930 81923216 -61863239 - THE1B LTR MaLR 0 364 77 197 326 148 15 chr12 81923622 81923757 -61862698 + MER5A DNA MER1_type 16 168 -21 22 0 0 0 chr12 81925214 81925236 -61861219 + AT_rich Low_complexity Low_complexity 1 22 0 297 150 50 0 chr12 81925270 81925350 -61861105 + GA-rich Low_complexity Low_complexity 3 86 0 484 252 46 20 chr12 81927100 81927251 -61859204 + MIR SINE MIR 80 234 -28 320 171 0 85 chr12 81927330 81927412 -61859043 + L2 LINE L2 3205 3279 -34 257 286 36 0 chr12 81927646 81927758 -61858697 + (TA)n Simple_repeat Simple_repeat 1 116 0 1302 214 118 58 chr12 81928917 81928963 -61857492 + Charlie4a DNA MER1_type 49 91 -1870 1774 170 10 7 chr12 81928963 81929263 -61857192 - AluJo SINE Alu -11 301 1 1302 214 118 58 chr12 81929263 81929650 -61856805 + Charlie4a DNA MER1_type 91 508 0 257 315 108 9 chr12 81929652 81929763 -61856692 + L2 LINE L2 3191 3312 -1 638 211 148 59 chr12 81929941 81930178 -61856277 - MIR SINE MIR 0 262 5 2143 90 4 0 chr12 81930860 81931128 -61855327 - AluSx SINE Alu -18 294 26 2325 67 3 23 chr12 81931135 81931434 -61855021 - AluY SINE Alu -18 293 1 382 184 11 23 chr12 81932184 81932271 -61854184 + L1ME4a LINE L1 5966 6051 -70 346 306 63 68 chr12 81933271 81933523 -61852932 - MIR SINE MIR -2 260 10 716 113 94 0 chr12 81933790 81933896 -61852559 + FRAM SINE Alu 53 168 -8 2204 113 3 0 chr12 81934020 81934320 -61852135 + AluSx SINE Alu 1 301 -11 195 42 0 0 chr12 81934324 81934348 -61852107 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 841 226 25 30 chr12 81935178 81935377 -61851078 + MIR SINE MIR 37 234 -28 1367 188 8 0 chr12 81935963 81936197 -61850258 + AluJb SINE Alu 73 308 -4 4015 265 78 11 chr12 81937635 81939037 -61847418 + L1ME3A LINE L1 60 1554 -4842 888 169 0 66 chr12 81939057 81939240 -61847215 + FRAM SINE Alu 1 171 -5 644 211 0 23 chr12 81939272 81939405 -61847050 - FLAM_A SINE Alu -3 130 1 2517 39 0 26 chr12 81939424 81939729 -61846726 - AluY SINE Alu -14 297 1 1069 232 66 0 chr12 81939729 81939988 -61846467 + L1ME3A LINE L1 1591 1866 -4530 899 153 0 0 chr12 81939989 81940120 -61846335 + AluJb SINE Alu 1 131 -181 3345 210 61 34 chr12 81940140 81941586 -61844869 + L1ME3A LINE L1 1891 3670 -2545 687 200 14 0 chr12 81941563 81941703 -61844752 + L1ME3A LINE L1 3603 3744 -2471 * 2934 204 136 35 chr12 81941676 81942673 -61843782 + L1ME2 LINE L1 4842 6162 -241 3277 194 74 3 chr12 81942673 81943280 -61843175 + MER82 DNA MER2_type 2 651 -2 2934 204 136 35 chr12 81943280 81943550 -61842905 + L1ME2 LINE L1 6162 6403 0 2341 92 3 0 chr12 81943876 81944171 -61842284 - AluSq SINE Alu -17 296 1 300 273 160 7 chr12 81944663 81944813 -61841642 - L2 LINE L2 -185 3087 2915 202 299 62 41 chr12 81944826 81944923 -61841532 + L2 LINE L2 3197 3295 -18 226 151 57 94 chr12 81945380 81945433 -61841022 - Zaphod DNA AcHobo -490 3541 3491 559 227 20 20 chr12 81949860 81950010 -61836445 + MIR SINE MIR 11 160 -102 250 345 58 36 chr12 81952104 81952313 -61834142 - MIR SINE MIR -16 246 23 25 51 0 0 chr12 81952993 81953032 -61833423 + AT_rich Low_complexity Low_complexity 1 39 0 283 259 273 7 chr12 81953705 81953844 -61832611 + MER5A DNA MER1_type 14 189 0 1682 276 118 25 chr12 81954037 81954143 -61832312 + L1ME3A LINE L1 3937 4032 -2207 1432 50 11 0 chr12 81954143 81954322 -61832133 + L1PA5 LINE L1 5966 6146 -8 1682 276 118 25 chr12 81954322 81955843 -61830612 + L1ME3A LINE L1 4032 5724 -515 1022 187 35 19 chr12 81955843 81956261 -61830194 - Charlie1b DNA MER1_type 0 523 1 724 250 57 0 chr12 81956261 81956489 -61829966 + L1ME3A LINE L1 5718 5958 -281 1371 133 22 4 chr12 81956698 81956923 -61829532 + L1PA15 LINE L1 5937 6165 0 697 221 5 38 chr12 81956981 81957194 -61829261 + L1M4 LINE L1 4284 4489 -1657 340 232 146 73 chr12 81957503 81957654 -61828801 - MIR SINE MIR -66 196 35 27 73 0 0 chr12 81958266 81958321 -61828134 + AT_rich Low_complexity Low_complexity 1 55 0 281 232 101 0 chr12 81959326 81959395 -61827060 - MER5C DNA MER1_type 0 324 249 1681 183 3 29 chr12 81959553 81959737 -61826718 - AluJo SINE Alu -1 311 137 1713 155 0 73 chr12 81959737 81960054 -61826401 - AluJo SINE Alu -18 294 1 1681 183 3 29 chr12 81960054 81960180 -61826275 - AluJo SINE Alu -175 137 9 250 295 48 19 chr12 81960193 81960298 -61826157 - MER5C DNA MER1_type -216 108 1 684 208 94 0 chr12 81960898 81961047 -61825408 - MIR SINE MIR -15 247 85 378 262 238 6 chr12 81961277 81961441 -61825014 + MIR SINE MIR 60 261 -1 272 261 90 45 chr12 81962042 81962176 -61824279 + MIR3 SINE MIR 43 182 -26 981 258 94 35 chr12 81962237 81962385 -61824070 + LTR16A LTR ERVL 57 195 -255 2158 72 7 18 chr12 81962385 81962661 -61823794 + AluY SINE Alu 31 303 -8 981 258 94 35 chr12 81962661 81962884 -61823571 + LTR16A LTR ERVL 195 450 0 221 206 168 61 chr12 81962927 81963058 -61823397 + MIR SINE MIR 118 262 0 417 304 173 35 chr12 81963426 81964005 -61822450 + L2 LINE L2 1728 2386 -928 267 279 26 97 chr12 81964519 81964673 -61821782 + L2 LINE L2 2941 3083 -189 188 341 12 12 chr12 81964851 81964936 -61821519 - MIR SINE MIR -80 182 98 341 275 0 33 chr12 81964992 81965083 -61821372 - MIR SINE MIR -156 106 19 22 0 0 0 chr12 81965560 81965582 -61820873 + AT_rich Low_complexity Low_complexity 1 22 0 3828 162 39 16 chr12 81965599 81966292 -61820163 + MER44D DNA MER2_type 25 605 0 27 0 0 0 chr12 81968304 81968331 -61818124 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 81968489 81968511 -61817944 + GC_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr12 81968521 81968553 -61817902 + GC_rich Low_complexity Low_complexity 1 32 0 1647 173 56 8 chr12 81969140 81969516 -61816939 - L1MC3 LINE L1 0 7785 7392 2200 104 3 13 chr12 81969648 81969955 -61816500 - AluSx SINE Alu -8 304 1 793 226 154 64 chr12 81970287 81970709 -61815746 - MLT1D LTR MaLR -1 466 7 942 273 32 10 chr12 81971092 81971400 -61815055 - MLT1G LTR MaLR -260 330 16 189 0 0 0 chr12 81971400 81971421 -61815034 + (TC)n Simple_repeat Simple_repeat 2 22 0 339 213 0 0 chr12 81971421 81971496 -61814959 + (TA)n Simple_repeat Simple_repeat 2 76 0 6075 57 5 31 chr12 81971500 81972363 -61814092 - L1PA7 LINE L1 -22 6132 5293 504 247 8 44 chr12 81972519 81972671 -61813784 - MER5B DNA MER1_type -2 176 40 202 209 23 0 chr12 81973791 81973834 -61812621 + (TG)n Simple_repeat Simple_repeat 2 45 0 299 375 31 6 chr12 81974154 81974314 -61812141 + MIR3 SINE MIR 36 199 -9 28 48 0 0 chr12 81974319 81974361 -61812094 + AT_rich Low_complexity Low_complexity 1 42 0 2227 82 0 20 chr12 81974642 81974936 -61811519 - AluSg1 SINE Alu -13 296 9 200 59 29 0 chr12 81976203 81976237 -61810218 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2329 85 0 0 chr12 81976237 81976536 -61809919 - AluSc SINE Alu 0 299 1 1270 194 25 50 chr12 81976548 81976568 -61809887 - AluJo SINE Alu -21 291 272 2435 114 11 22 chr12 81976568 81976936 -61809519 + THE1B LTR MaLR 1 364 0 1270 194 25 50 chr12 81976936 81977198 -61809257 - AluJo SINE Alu -40 272 16 24 39 0 0 chr12 81977213 81977239 -61809216 + AT_rich Low_complexity Low_complexity 1 26 0 423 218 0 0 chr12 81977678 81977765 -61808690 + MLT2D LTR ERVL 3 89 -325 271 140 80 0 chr12 81977766 81977816 -61808639 + MSTD LTR MaLR 1 54 -374 1090 228 33 47 chr12 81977854 81978213 -61808242 + MSTD LTR MaLR 41 394 -2 1185 174 19 132 chr12 81978220 81978583 -61807872 + MLT2D LTR ERVL 93 414 0 1329 304 26 37 chr12 81979007 81979496 -61806959 + L2 LINE L2 2523 3012 -301 654 251 22 22 chr12 81979501 81979680 -61806775 - MLT1J2 LTR MaLR -2 448 270 238 224 47 24 chr12 81979741 81979826 -61806629 - MLT1J2 LTR MaLR -299 151 65 1809 174 40 16 chr12 81980962 81981341 -61805114 + MLT1B LTR MaLR 3 390 0 2227 131 0 0 chr12 81981357 81981669 -61804786 - AluSx SINE Alu 0 312 1 747 295 75 14 chr12 81981884 81982046 -61804409 - MLT1J2 LTR MaLR -20 430 279 794 204 169 7 chr12 81982046 81982325 -61804130 + MER33 DNA MER1_type 1 324 0 747 295 75 14 chr12 81982325 81982508 -61803947 - MLT1J2 LTR MaLR -171 279 64 570 342 37 20 chr12 81982574 81982869 -61803586 + L2 LINE L2 2990 3289 -24 2434 134 37 73 chr12 81983584 81984149 -61802306 + L1MB4 LINE L1 5629 6173 -7 366 307 71 4 chr12 81984264 81984489 -61801966 + L1ME1 LINE L1 2151 2390 -3756 * 2483 127 0 34 chr12 81984484 81984925 -61801530 + L1PB4 LINE L1 5492 5917 -239 492 185 0 0 chr12 81984925 81985006 -61801449 + AluSg/x SINE Alu 204 284 -26 1263 159 33 37 chr12 81985006 81985277 -61801178 + L1PB4 LINE L1 5874 6143 -13 331 301 63 51 chr12 81985401 81985952 -61800503 + L1ME1 LINE L1 2465 3022 -3124 207 88 0 0 chr12 81985961 81985995 -61800460 + (A)n Simple_repeat Simple_repeat 1 34 0 1819 147 6 35 chr12 81986000 81986319 -61800136 + AluJo SINE Alu 1 310 -2 5034 245 33 28 chr12 81986591 81987197 -61799258 + L1ME1 LINE L1 3426 4028 -2138 2119 140 3 0 chr12 81987197 81987497 -61798958 + AluSg SINE Alu 1 301 -9 5034 245 33 28 chr12 81987497 81987586 -61798869 + L1ME1 LINE L1 4028 4115 -2051 5213 63 5 0 chr12 81987586 81988251 -61798204 - L1PA7 LINE L1 -11 6143 5476 5034 245 33 28 chr12 81988251 81990140 -61796315 + L1ME1 LINE L1 4115 6021 -145 272 242 64 38 chr12 81990207 81990364 -61796091 - MLT1H1 LTR MaLR -26 529 369 213 39 0 0 chr12 81991513 81991539 -61794916 + (T)n Simple_repeat Simple_repeat 1 26 0 207 69 0 0 chr12 81991903 81991932 -61794523 + (CA)n Simple_repeat Simple_repeat 2 30 0 28 29 0 0 chr12 81992089 81992124 -61794331 + AT_rich Low_complexity Low_complexity 1 35 0 319 315 94 42 chr12 81992169 81992382 -61794073 + L1M4 LINE L1 3517 3740 -2406 777 310 74 13 chr12 81992503 81992880 -61793575 - MLT1I LTR MaLR -7 402 3 1045 107 6 6 chr12 81992886 81993054 -61793401 + (TTCC)n Simple_repeat Simple_repeat 4 171 0 363 44 0 0 chr12 81993054 81993099 -61793356 + (TC)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr12 81993099 81993123 -61793332 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 35177 89 14 16 chr12 81993123 81999269 -61787186 - L1PA6 LINE L1 -16 6138 11 22 0 0 0 chr12 82000104 82000126 -61786329 + AT_rich Low_complexity Low_complexity 1 22 0 1096 282 56 21 chr12 82000155 82000337 -61786118 - MLT1I LTR MaLR -2 407 233 2363 120 25 11 chr12 82000337 82000696 -61785759 - THE1B LTR MaLR 0 364 1 1096 282 56 21 chr12 82000696 82000889 -61785566 - MLT1I LTR MaLR -176 233 19 357 24 0 0 chr12 82000903 82000945 -61785510 + (CA)n Simple_repeat Simple_repeat 1 42 0 410 116 0 0 chr12 82001517 82001587 -61784868 - THE1C LTR MaLR -32 395 288 700 227 30 30 chr12 82001590 82001788 -61784667 - MER3 DNA MER1_type -6 203 6 2043 133 0 0 chr12 82001857 82002157 -61784298 + AluY SINE Alu 1 300 -11 600 233 80 7 chr12 82002654 82002804 -61783651 - MLT1J LTR MaLR -347 164 4 384 303 107 20 chr12 82002813 82003423 -61783032 + L1M4 LINE L1 4109 4771 -1375 509 143 0 0 chr12 82003427 82003497 -61782958 + FLAM SINE Alu 47 116 -27 840 288 55 0 chr12 82003599 82003835 -61782620 + MIR SINE MIR 14 262 0 421 125 12 12 chr12 82003934 82004014 -61782441 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 26 30 0 0 chr12 82004056 82004089 -61782366 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 82005746 82005770 -61780685 + (A)n Simple_repeat Simple_repeat 1 24 0 273 322 94 34 chr12 82006058 82006207 -61780248 + L2 LINE L2 596 753 -2561 339 318 230 11 chr12 82006392 82006826 -61779629 + L2 LINE L2 1699 2227 -1087 393 346 90 22 chr12 82007533 82007888 -61778567 + L2 LINE L2 2286 2664 -650 182 274 39 0 chr12 82007901 82007952 -61778503 + L2 LINE L2 3185 3237 -35 180 237 0 0 chr12 82007969 82008007 -61778448 + L3 LINE CR1 516 553 -1024 1896 162 0 7 chr12 82008237 82008533 -61777922 + AluSx SINE Alu 1 294 -18 186 118 0 0 chr12 82008637 82008671 -61777784 + (TA)n Simple_repeat Simple_repeat 2 35 0 706 0 0 23 chr12 82008671 82008751 -61777704 - L1PA6 LINE L1 -7 6147 6068 5262 154 25 36 chr12 82008820 82009870 -61776585 + L1MA8 LINE L1 5254 6291 0 221 0 35 0 chr12 82009887 82009916 -61776539 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 326 237 26 70 chr12 82010839 82010953 -61775502 - MIR SINE MIR -3 259 151 398 294 65 7 chr12 82011060 82011213 -61775242 + MIR SINE MIR 87 248 -14 2094 142 0 3 chr12 82012327 82012637 -61773818 - AluSx SINE Alu -3 309 1 2831 266 68 52 chr12 82012642 82013103 -61773352 - HAL1 LINE L1 0 2507 2055 2568 105 8 3 chr12 82013103 82013465 -61772990 + THE1B LTR MaLR 1 364 0 2831 266 68 52 chr12 82013465 82014360 -61772095 - HAL1 LINE L1 -452 2055 1176 243 0 0 0 chr12 82014360 82014387 -61772068 + (TG)n Simple_repeat Simple_repeat 2 28 0 1692 174 3 17 chr12 82014387 82014675 -61771780 - AluJo SINE Alu -27 285 2 2831 266 68 52 chr12 82014675 82014736 -61771719 - HAL1 LINE L1 -1330 1177 1065 420 222 163 0 chr12 82014743 82014878 -61771577 - L1ME1 LINE L1 -4 6162 6006 * 956 217 29 24 chr12 82014867 82015208 -61771247 - L1MEc LINE L1 -3966 2430 2088 379 228 128 28 chr12 82015204 82015384 -61771071 - HAL1 LINE L1 -1416 1091 894 * 2533 133 64 0 chr12 82015397 82015849 -61770606 - L1MA8 LINE L1 -26 6265 5785 1001 216 129 36 chr12 82015850 82016020 -61770435 - MER2 DNA MER2_type 0 345 138 2498 52 0 3 chr12 82016020 82016327 -61770128 - AluY SINE Alu -3 308 3 1001 216 129 36 chr12 82016327 82016434 -61770021 - MER2 DNA MER2_type -207 138 42 1117 190 3 1 chr12 82016449 82016669 -61769786 - L1P4 LINE L1 -379 5787 5564 3434 73 0 9 chr12 82017111 82017551 -61768904 - MLT2A1 LTR ERVL -8 436 1 230 218 346 10 chr12 82017694 82017795 -61768660 + MIR SINE MIR 19 153 -109 22 56 0 0 chr12 82018018 82018054 -61768401 + AT_rich Low_complexity Low_complexity 1 36 0 280 318 69 42 chr12 82020010 82020199 -61766256 + L2 LINE L2 2357 2550 -764 282 56 0 0 chr12 82020473 82020509 -61765946 + (TA)n Simple_repeat Simple_repeat 1 36 0 1036 32 0 0 chr12 82020559 82020682 -61765773 - L1PA5 LINE L1 -8 6146 6024 258 196 0 18 chr12 82020887 82020943 -61765512 + MIR SINE MIR 99 153 -109 360 321 6 30 chr12 82021095 82021260 -61765195 + Charlie8 DNA MER1_type 18 178 -2239 564 350 44 4 chr12 82022900 82023126 -61763329 - MIR SINE MIR -2 260 26 4310 163 31 1 chr12 82024602 82025313 -61761142 - MER44D DNA MER2_type 0 605 2 733 326 107 32 chr12 82025349 82026141 -61760314 - L2 LINE L2 -1 3312 2457 4793 171 9 16 chr12 82026228 82027121 -61759334 - L1MC1 LINE L1 0 6333 5447 3325 166 50 51 chr12 82028267 82028771 -61757684 + L1MB8 LINE L1 5433 5937 -241 1823 164 23 3 chr12 82028771 82029076 -61757379 + AluJo SINE Alu 1 311 -1 3325 166 50 51 chr12 82029076 82029299 -61757156 + L1MB8 LINE L1 5937 6159 -19 4878 174 33 10 chr12 82029744 82030710 -61755745 + L1MB3 LINE L1 4969 5971 -212 2182 100 40 0 chr12 82030710 82031009 -61755446 + AluSp SINE Alu 1 311 -2 4878 174 33 10 chr12 82031009 82031214 -61755241 + L1MB3 LINE L1 5971 6170 -13 1983 152 0 7 chr12 82031233 82031542 -61754913 + AluSx SINE Alu 1 307 -5 241 254 0 51 chr12 82031542 82031591 -61754864 - MER58 DNA MER1_type -2372 48 1 1014 206 122 33 chr12 82031636 82031971 -61754484 + MLT1A1 LTR MaLR 1 365 0 189 0 0 0 chr12 82032185 82032206 -61754249 + (CAA)n Simple_repeat Simple_repeat 1 21 0 358 318 55 9 chr12 82033424 82033577 -61752878 + MIR SINE MIR 5 166 -62 2838 192 60 47 chr12 82033812 82034495 -61751960 - L1MD2 LINE L1 -11 6348 5657 25 0 0 0 chr12 82034704 82034729 -61751726 + AT_rich Low_complexity Low_complexity 1 25 0 605 323 15 46 chr12 82035079 82035342 -61751113 - MIR SINE MIR 0 262 8 1950 124 0 27 chr12 82035395 82035693 -61750762 - AluJb SINE Alu -22 290 1 382 170 53 21 chr12 82037038 82037132 -61749323 - MLT1G1 LTR MaLR 0 590 494 * 777 247 30 63 chr12 82037123 82037394 -61749061 - MLT2C1 LTR ERVL -112 285 24 405 58 0 0 chr12 82037396 82037448 -61749007 + (CA)n Simple_repeat Simple_repeat 2 53 0 1062 287 109 27 chr12 82037448 82037890 -61748565 - MLT1G1 LTR MaLR -117 478 1 2115 246 72 26 chr12 82038160 82038705 -61747750 - MLT1E LTR MaLR 0 593 24 563 16 0 0 chr12 82039560 82039624 -61746831 + L1PA4 LINE L1 5831 5894 -261 380 280 16 16 chr12 82040312 82040437 -61746018 - L1ME3A LINE L1 -8 6162 6038 325 325 138 27 chr12 82040612 82041205 -61745250 - L2 LINE L2 -831 2483 1825 271 266 156 8 chr12 82042396 82042524 -61743931 + MER117 DNA MER1_type 4 150 -47 316 268 144 21 chr12 82042708 82042805 -61743650 + MIR SINE MIR 48 156 -106 319 377 36 0 chr12 82043019 82043157 -61743298 - L2 LINE L2 -212 3060 2918 593 296 92 4 chr12 82043954 82044194 -61742261 - MIR SINE MIR -1 261 1 287 330 125 0 chr12 82044665 82044777 -61741678 + L2 LINE L2 3147 3272 0 1458 103 45 0 chr12 82044954 82045178 -61741277 - L1M3 LINE L1 -614 5554 5321 1693 176 0 3 chr12 82045188 82045494 -61740961 - L1MA6 LINE L1 -5 6295 5991 1388 205 12 62 chr12 82045503 82045614 -61740841 + L1M1 LINE L1 2880 2995 -4570 2304 114 3 0 chr12 82045614 82045920 -61740535 + AluSp SINE Alu 2 308 -5 1388 205 12 62 chr12 82045920 82046227 -61740228 + L1M1 LINE L1 2995 3277 -4288 623 165 23 15 chr12 82046262 82046395 -61740060 - L1M3 LINE L1 -822 5324 5191 592 170 19 0 chr12 82046387 82046493 -61739962 - L1MB2 LINE L1 -170 6001 5894 * 11169 31 6 0 chr12 82047296 82049387 -61737068 + L1PA4 LINE L1 4058 6153 -2 367 230 160 0 chr12 82049473 82049573 -61736882 - MER91B DNA MER1_type -61 129 14 1182 278 141 40 chr12 82049873 82050518 -61735937 + L2 LINE L2 1549 2258 -1056 442 238 112 14 chr12 82050654 82050797 -61735658 - MIR SINE MIR 0 262 106 792 285 10 5 chr12 82050836 82051036 -61735419 - MER58A DNA MER1_type 0 224 24 201 178 0 0 chr12 82051153 82051198 -61735257 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 288 205 7 0 chr12 82051583 82051649 -61734806 + MIR SINE MIR 104 172 -36 399 41 0 0 chr12 82052115 82052164 -61734291 + (TG)n Simple_repeat Simple_repeat 2 50 0 2186 112 0 0 chr12 82052165 82052450 -61734005 - AluSx SINE Alu -27 285 1 312 308 33 0 chr12 82054190 82054343 -61732112 + L2 LINE L2 3147 3264 -49 328 23 0 0 chr12 82054481 82054525 -61731930 + L1PA3 LINE L1 6110 6199 0 219 109 65 0 chr12 82054525 82054571 -61731884 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 23 0 9 0 chr12 82055035 82055099 -61731356 + AT_rich Low_complexity Low_complexity 1 23 0 1971 122 34 6 chr12 82055706 82056034 -61730421 + L1MA4A LINE L1 5963 6299 -4 23 0 0 0 chr12 82056128 82056151 -61730304 + AT_rich Low_complexity Low_complexity 1 23 0 1990 230 82 14 chr12 82056777 82057363 -61729092 + MLT1E2 LTR MaLR 1 626 0 1872 182 114 47 chr12 82057540 82058013 -61728442 - MLT1D LTR MaLR 0 505 1 430 314 77 31 chr12 82058062 82058256 -61728199 + MLT1G1 LTR MaLR 238 440 -155 335 161 0 62 chr12 82058282 82058363 -61728092 + MLT1G1 LTR MaLR 477 552 -15 227 247 37 37 chr12 82058476 82058557 -61727898 + MIR SINE MIR 182 262 0 345 347 65 71 chr12 82059375 82059954 -61726501 + L2 LINE L2 2640 3270 -2 638 134 9 4 chr12 82060303 82060411 -61726044 - L1PB4 LINE L1 0 6156 6061 4411 165 46 51 chr12 82060441 82061793 -61724662 - L1PB4 LINE L1 -92 6064 4712 1438 119 60 5 chr12 82061793 82062011 -61724444 + MER30 DNA MER1_type 1 230 0 4411 165 46 51 chr12 82062011 82062489 -61723966 - L1PB4 LINE L1 -1444 4712 4233 203 265 39 59 chr12 82062573 82062675 -61723780 + L2 LINE L2 3131 3230 -83 240 111 0 0 chr12 82064993 82065029 -61721426 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 82065029 82065051 -61721404 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 82065461 82065486 -61720969 + AT_rich Low_complexity Low_complexity 1 25 0 509 161 21 0 chr12 82065610 82065703 -61720752 - U13 snRNA snRNA -9 95 1 30 0 0 0 chr12 82067188 82067218 -61719237 + AT_rich Low_complexity Low_complexity 1 30 0 266 186 71 29 chr12 82067593 82067663 -61718792 - MIR3 SINE MIR -43 165 93 502 185 130 71 chr12 82067704 82067888 -61718567 - Charlie8 DNA MER1_type -2186 231 37 5718 133 12 0 chr12 82067985 82069373 -61717082 + L1PA15 LINE L1 4751 6157 -8 713 290 80 58 chr12 82069835 82070297 -61716158 - MLT1L LTR MaLR 0 615 144 501 325 103 57 chr12 82070761 82071049 -61715406 + L2 LINE L2 2381 2691 -623 1881 136 37 7 chr12 82071049 82071344 -61715111 - AluJb SINE Alu -4 308 5 501 325 103 57 chr12 82071344 82071424 -61715031 + L2 LINE L2 2691 2766 -548 277 256 23 45 chr12 82071541 82071674 -61714781 + MLT1I LTR MaLR 50 179 -370 279 217 48 21 chr12 82071819 82071930 -61714525 + MLT1I LTR MaLR 307 577 -18 26 30 0 0 chr12 82072025 82072058 -61714397 + AT_rich Low_complexity Low_complexity 1 33 0 1824 174 7 0 chr12 82072443 82072731 -61713724 + AluJo SINE Alu 4 293 -19 191 291 31 110 chr12 82072753 82072880 -61713575 - L2 LINE L2 0 3272 3156 420 214 51 0 chr12 82073174 82073272 -61713183 + L3 LINE CR1 1186 1288 -289 186 43 0 0 chr12 82075053 82075076 -61711379 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 320 297 39 47 chr12 82075154 82075282 -61711173 + L3 LINE CR1 1443 1569 -8 2515 70 0 0 chr12 82075515 82075815 -61710640 + AluY SINE Alu 1 300 -11 289 210 25 37 chr12 82075937 82076006 -61710449 - L1 LINE L1 -1915 4231 4162 291 37 37 19 chr12 82076006 82076060 -61710395 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 43018 31 21 3 chr12 82076060 82082100 -61704355 - L1PA2 LINE L1 -2 6153 1 1217 246 176 13 chr12 82082189 82082661 -61703794 - MLT1H LTR MaLR 0 549 1 278 254 46 81 chr12 82082662 82082835 -61703620 - MIR SINE MIR -32 230 64 844 135 54 0 chr12 82083802 82083950 -61702505 + MER61-int LTR ERV1 4084 4239 -978 * 3246 113 16 6 chr12 82083925 82084412 -61702043 - MER61-int LTR ERV1 -1137 4080 3589 7488 88 11 14 chr12 82084559 82085188 -61701267 - MER61-int LTR ERV1 -1501 3716 3090 2456 80 0 10 chr12 82085188 82085502 -61700953 + AluY SINE Alu 1 311 0 7488 88 11 14 chr12 82085502 82085946 -61700509 - MER61-int LTR ERV1 -2127 3090 2646 2440 102 0 0 chr12 82085946 82086280 -61700175 - L1M1 LINE L1 -526 5779 5446 2309 108 73 14 chr12 82086280 82086624 -61699831 - THE1B LTR MaLR 0 364 1 1754 247 61 32 chr12 82086624 82087708 -61698747 - L1ME LINE L1 -439 5708 4600 464 291 94 33 chr12 82087728 82087972 -61698483 - L1ME LINE L1 -4922 1197 939 251 255 0 0 chr12 82088152 82088203 -61698252 + L2 LINE L2 3255 3305 -8 1393 174 26 71 chr12 82090102 82090226 -61696229 + AluJo SINE Alu 1 129 -183 284 48 24 0 chr12 82090226 82090268 -61696187 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1393 174 26 71 chr12 82090268 82090454 -61696001 + AluJo SINE Alu 129 297 -15 180 382 0 0 chr12 82090673 82090741 -61695714 - L2 LINE L2 -222 3050 2983 1064 331 118 14 chr12 82090804 82091609 -61694846 + L2 LINE L2 1812 2758 -556 665 304 70 21 chr12 82091964 82092207 -61694248 - MIR SINE MIR 0 262 8 375 295 57 25 chr12 82092234 82092356 -61694099 + L2 LINE L2 3147 3272 0 23 33 0 0 chr12 82093552 82093582 -61692873 + AT_rich Low_complexity Low_complexity 1 30 0 1187 297 80 9 chr12 82093949 82094373 -61692082 - MLT1J LTR MaLR -41 470 17 205 215 92 0 chr12 82095082 82095147 -61691308 + MIR SINE MIR 132 202 -60 1549 204 0 18 chr12 82095425 82095733 -61690722 - AluJo SINE Alu 0 307 5 24 0 0 0 chr12 82095844 82095868 -61690587 + AT_rich Low_complexity Low_complexity 1 24 0 1540 37 5 0 chr12 82095874 82096063 -61690392 - L1PA4 LINE L1 -2 6153 5964 383 282 61 28 chr12 82099099 82099280 -61687175 + MER117 DNA MER1_type 4 190 -7 1314 228 3 42 chr12 82099700 82100055 -61686400 - L1MCc LINE L1 -1786 5155 4815 779 244 35 16 chr12 82100051 82100305 -61686150 - L1MCc LINE L1 -3542 3399 3141 * 986 135 0 0 chr12 82100305 82100438 -61686017 + AluSq/x SINE Alu 1 133 -180 270 0 0 0 chr12 82100441 82100471 -61685984 + (TA)n Simple_repeat Simple_repeat 1 30 0 2311 244 79 68 chr12 82100494 82101815 -61684640 - L1MCc LINE L1 -3936 3186 1600 1457 135 14 5 chr12 82101815 82102037 -61684418 - AluSg/x SINE Alu -8 304 81 2311 244 79 68 chr12 82102037 82102892 -61683563 - L1MCc LINE L1 -5522 1600 755 460 167 0 0 chr12 82103104 82103176 -61683279 + FRAM SINE Alu 21 92 -84 537 299 126 14 chr12 82103218 82103583 -61682872 - L1MCc LINE L1 -5995 428 23 219 191 59 0 chr12 82103681 82103749 -61682706 + (TATAA)n Simple_repeat Simple_repeat 5 76 0 448 271 72 24 chr12 82103786 82103952 -61682503 + MIR SINE MIR 32 205 -57 26 0 0 0 chr12 82104459 82104485 -61681970 + AT_rich Low_complexity Low_complexity 1 26 0 623 301 74 15 chr12 82104686 82104889 -61681566 + MIR SINE MIR 37 251 -11 655 252 215 0 chr12 82105587 82105801 -61680654 - MIR SINE MIR -2 260 1 839 208 99 0 chr12 82107669 82107890 -61678565 - L1MA9 LINE L1 -418 5894 5652 1573 172 56 24 chr12 82107912 82108289 -61678166 + L1MA9 LINE L1 5886 6274 -38 1182 237 41 35 chr12 82109380 82109722 -61676733 + L2 LINE L2 2966 3309 -4 301 280 80 7 chr12 82109738 82109888 -61676567 + L1ME4a LINE L1 5960 6120 -1 14833 131 11 15 chr12 82110575 82113003 -61673452 - Tigger1 DNA MER2_type 0 2418 1 404 314 170 14 chr12 82113003 82113226 -61673229 + MIR SINE MIR 5 262 0 4871 114 15 10 chr12 82113368 82114154 -61672301 - L1MA3 LINE L1 -5 6300 5511 896 182 19 5 chr12 82114278 82114487 -61671968 - L1MA3 LINE L1 -1639 4507 4296 432 0 0 0 chr12 82114718 82114766 -61671689 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 539 167 100 0 chr12 82114767 82114857 -61671598 - FLAM_A SINE Alu -21 121 23 435 233 43 0 chr12 82114885 82115001 -61671454 + L1MA4 LINE L1 5901 6021 -279 303 195 13 0 chr12 82115001 82115078 -61671377 + L1MB3 LINE L1 6090 6167 -16 313 340 117 29 chr12 82116285 82116491 -61669964 + L3 LINE CR1 1343 1566 -11 1195 224 66 40 chr12 82117059 82117439 -61669016 - MLT1B LTR MaLR 0 390 1 2472 105 8 3 chr12 82117452 82117805 -61668650 + THE1A LTR MaLR 1 355 0 11900 90 4 0 chr12 82117805 82119377 -61667078 + THE1A-int LTR MaLR 1 1578 -2 2473 103 11 0 chr12 82119379 82119730 -61666725 + THE1A LTR MaLR 1 355 0 374 300 116 58 chr12 82120649 82120976 -61665479 + L2 LINE L2 2541 2886 -428 190 276 52 17 chr12 82121047 82121105 -61665350 + L2 LINE L2 3002 3061 -252 862 181 0 0 chr12 82121212 82121361 -61665094 - L1PA16 LINE L1 -1 6165 6017 452 345 78 20 chr12 82121381 82121738 -61664717 - L2 LINE L2 -763 2551 2174 24 53 0 0 chr12 82122052 82122090 -61664365 + AT_rich Low_complexity Low_complexity 1 38 0 668 203 8 0 chr12 82123513 82123636 -61662819 + FLAM_A SINE Alu 1 124 -9 515 329 219 10 chr12 82123743 82124251 -61662204 + L2 LINE L2 2245 2858 -456 238 241 114 13 chr12 82124267 82124346 -61662109 + L2 LINE L2 3184 3270 -2 2440 144 65 16 chr12 82125729 82126174 -61660281 + MLT1C LTR MaLR 1 467 0 602 260 166 13 chr12 82126276 82126511 -61659944 + LTR33 LTR ERVL 4 274 -247 628 284 42 45 chr12 82126843 82127178 -61659277 - MER102b DNA MER1_type -7 334 1 283 329 35 24 chr12 82127712 82127882 -61658573 - MLT1I LTR MaLR -243 166 13 216 0 0 0 chr12 82128324 82128348 -61658107 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 863 216 39 75 chr12 82128348 82128830 -61657625 - MLT2D LTR ERVL -22 442 1 868 150 0 0 chr12 82129136 82129263 -61657192 - AluSg/x SINE Alu -14 296 170 1142 175 13 40 chr12 82129452 82129680 -61656775 + AluJb SINE Alu 86 307 -5 389 209 199 13 chr12 82129782 82129955 -61656500 - MIR SINE MIR -17 245 40 2362 103 3 0 chr12 82129978 82130288 -61656167 + AluSx SINE Alu 1 311 -1 218 383 26 9 chr12 82131893 82132008 -61654447 + L3 LINE CR1 427 543 -1034 2024 5 0 0 chr12 82132477 82132694 -61653761 + AluYa5 SINE Alu 76 292 -19 1901 148 7 3 chr12 82132950 82133247 -61653208 - AluSx SINE Alu -14 298 1 2237 125 0 3 chr12 82134634 82134946 -61651509 + AluSx SINE Alu 1 311 -1 418 9 106 18 chr12 82135753 82135866 -61650589 + (TA)n Simple_repeat Simple_repeat 2 124 0 315 184 35 0 chr12 82135936 82136023 -61650432 + (TA)n Simple_repeat Simple_repeat 1 90 0 323 282 0 39 chr12 82136023 82136126 -61650329 + L1MC4 LINE L1 6612 6710 -1332 2182 118 14 0 chr12 82136628 82136974 -61649481 - MER41B LTR ERV1 -284 351 1 1161 153 16 0 chr12 82136974 82137163 -61649292 + MSTB LTR MaLR 233 424 -2 31 68 0 0 chr12 82137500 82137559 -61648896 + AT_rich Low_complexity Low_complexity 1 59 0 1756 191 63 27 chr12 82139051 82139492 -61646963 - LTR2B LTR ERV1 0 490 34 478 272 84 75 chr12 82140228 82140389 -61646066 + L1MC5 LINE L1 7502 7660 -301 1989 136 20 26 chr12 82140389 82140734 -61645721 - MER61A LTR ERV1 0 343 1 478 272 84 75 chr12 82140734 82140918 -61645537 + L1MC5 LINE L1 7660 7850 -111 273 294 22 66 chr12 82140972 82141108 -61645347 + MARNA DNA Mariner 56 185 -401 720 279 78 36 chr12 82141495 82141853 -61644602 + MARNA DNA Mariner 201 573 -13 220 255 0 0 chr12 82141942 82141993 -61644462 + (TG)n Simple_repeat Simple_repeat 1 51 0 309 279 46 56 chr12 82143777 82143974 -61642481 - L2 LINE L2 0 3313 3119 472 332 119 61 chr12 82144148 82144873 -61641582 - L2 LINE L2 -435 2879 2113 508 248 128 13 chr12 82144876 82145025 -61641430 + MER5A DNA MER1_type 1 166 -23 236 305 225 31 chr12 82145035 82145488 -61640967 - L2 LINE L2 -1207 2107 1567 623 256 154 82 chr12 82145563 82146004 -61640451 + L2 LINE L2 2841 3313 0 526 374 35 23 chr12 82145992 82146423 -61640032 - L2 LINE L2 -1818 1496 1061 * 258 311 81 37 chr12 82146956 82147117 -61639338 + MIR SINE MIR 49 216 -46 294 29 0 0 chr12 82147447 82147482 -61638973 + (TG)n Simple_repeat Simple_repeat 2 36 0 1679 156 7 40 chr12 82147804 82147907 -61638548 + AluJb SINE Alu 1 106 -206 2371 151 44 2 chr12 82147907 82148318 -61638137 - MSTA LTR MaLR 0 428 1 1679 156 7 40 chr12 82148318 82148515 -61637940 + AluJb SINE Alu 106 291 -21 401 395 78 34 chr12 82149996 82150353 -61636102 + L2 LINE L2 2900 3272 0 423 105 12 81 chr12 82151190 82151276 -61635179 - MADE1 DNA Mariner 0 80 1 1372 189 53 22 chr12 82151369 82151687 -61634768 - MER58B DNA MER1_type 0 341 14 2231 110 0 3 chr12 82151688 82151989 -61634466 - AluSg SINE Alu -10 300 1 781 275 67 29 chr12 82152416 82152761 -61633694 - MLT1J LTR MaLR -148 363 6 184 238 25 88 chr12 82153046 82153126 -61633329 + L2 LINE L2 3239 3313 0 27198 101 11 17 chr12 82155172 82157750 -61628705 + L1PA7 LINE L1 842 3432 -3037 2520 56 7 10 chr12 82157750 82158056 -61628399 + AluY SINE Alu 1 305 -6 27198 101 11 17 chr12 82158056 82158655 -61627800 + L1PA7 LINE L1 3432 4033 -2436 198 0 0 0 chr12 82158655 82158677 -61627778 + (CAA)n Simple_repeat Simple_repeat 3 24 0 27198 101 11 17 chr12 82158677 82161111 -61625344 + L1PA7 LINE L1 4033 6455 -14 468 248 108 19 chr12 82162409 82162566 -61623889 + MLT1J1 LTR MaLR 1 171 -275 2341 140 22 0 chr12 82163243 82163599 -61622856 - THE1B LTR MaLR 0 364 1 317 318 0 0 chr12 82165288 82165373 -61621082 - MIR3 SINE MIR -5 203 119 201 39 0 0 chr12 82165445 82165471 -61620984 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 296 258 82 0 chr12 82166026 82166134 -61620321 + MIR SINE MIR 35 154 -54 1585 186 120 28 chr12 82166363 82166820 -61619635 + L1ME2 LINE L1 5657 6155 -9 192 250 21 21 chr12 82168096 82168144 -61618311 - L2 LINE L2 -2047 1267 1220 406 289 52 22 chr12 82168181 82168316 -61618139 - MIR3 SINE MIR -5 203 65 6498 122 8 7 chr12 82168329 82169624 -61616831 + L1MA5A LINE L1 5004 6296 -1 26 0 0 0 chr12 82170364 82170390 -61616065 + AT_rich Low_complexity Low_complexity 1 26 0 235 275 40 64 chr12 82170946 82171086 -61615369 - MIR SINE MIR -56 206 72 518 301 56 36 chr12 82171406 82171655 -61614800 - MLT1K LTR MaLR -29 559 306 22 35 0 0 chr12 82171902 82171931 -61614524 + AT_rich Low_complexity Low_complexity 1 29 0 780 276 51 19 chr12 82172464 82172779 -61613676 - L1MEd LINE L1 -5282 837 513 252 278 35 53 chr12 82172791 82172960 -61613495 - L1MEd LINE L1 -5779 340 175 236 190 10 90 chr12 82173134 82173234 -61613221 + T-rich Low_complexity Low_complexity 3 94 0 21 89 0 0 chr12 82173317 82173373 -61613082 + AT_rich Low_complexity Low_complexity 1 56 0 393 22 0 0 chr12 82173851 82173897 -61612558 + (TG)n Simple_repeat Simple_repeat 1 46 0 386 252 98 14 chr12 82174106 82174249 -61612206 - L2 LINE L2 0 3313 3159 367 251 53 41 chr12 82174268 82174439 -61612016 + MER104 DNA Tc2 6 178 -2 712 137 0 0 chr12 82174522 82174646 -61611809 - L1MA4 LINE L1 -6 6294 6171 307 276 53 0 chr12 82174655 82174731 -61611724 - L2 LINE L2 -243 3070 2991 2224 118 48 25 chr12 82174741 82175096 -61611359 - THE1B LTR MaLR -1 363 1 5913 98 51 0 chr12 82175096 82175965 -61610490 - THE1B-int LTR MaLR 0 1580 668 30969 48 3 0 chr12 82175965 82180005 -61606450 - L1P LINE L1 -1473 4673 623 680 80 0 0 chr12 82180003 82180091 -61606364 - L1P LINE L1 -6048 98 11 * 233 98 73 0 chr12 82180098 82180139 -61606316 - THE1B-int LTR MaLR -1536 44 1 2046 142 51 25 chr12 82180141 82180494 -61605961 - THE1B LTR MaLR -2 362 1 201 250 18 71 chr12 82180498 82180554 -61605901 + MER91 DNA MER1_type 9 61 -79 586 327 148 6 chr12 82180604 82180863 -61605592 - L2 LINE L2 -321 2992 2696 489 225 25 33 chr12 82180868 82180988 -61605467 - L2 LINE L2 -765 2549 2431 3379 23 0 0 chr12 82182037 82182432 -61604023 - L1PA3 LINE L1 0 6155 5761 28 71 0 0 chr12 82182724 82182780 -61603675 + AT_rich Low_complexity Low_complexity 1 56 0 504 60 9 52 chr12 82182787 82182903 -61603552 + (TTATA)n Simple_repeat Simple_repeat 4 114 0 1066 228 84 15 chr12 82185081 82185415 -61601040 + MLT1C LTR MaLR 111 467 0 2255 122 3 3 chr12 82185533 82185845 -61600610 + AluJb SINE Alu 1 312 0 1191 157 29 9 chr12 82185871 82186081 -61600374 + MER20 DNA MER1_type 5 218 -1 212 233 71 104 chr12 82186103 82186203 -61600252 + MIR SINE MIR 43 141 -67 300 283 101 36 chr12 82186677 82186815 -61599640 - MIR SINE MIR -82 180 34 1736 147 4 28 chr12 82187242 82187631 -61598824 + Charlie3 DNA MER1_type 1 2712 0 231 88 0 0 chr12 82187764 82187798 -61598657 + (TG)n Simple_repeat Simple_repeat 2 35 0 729 268 123 24 chr12 82187909 82188365 -61598090 + HsTC2 DNA Tc2 1218 1894 -4 25 31 0 0 chr12 82188796 82188828 -61597627 + AT_rich Low_complexity Low_complexity 1 32 0 1177 197 57 42 chr12 82188884 82189267 -61597188 + MLT2B1 LTR ERVL 4 391 -73 1852 146 7 14 chr12 82189326 82189614 -61596841 - AluJb SINE Alu -6 306 21 700 195 169 0 chr12 82189646 82189800 -61596655 + MER5A DNA MER1_type 9 188 -1 356 0 0 22 chr12 82189983 82190028 -61596427 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 584 219 88 0 chr12 82190046 82190160 -61596295 - FLAM_C SINE Alu -19 124 1 22 0 0 0 chr12 82190162 82190184 -61596271 + AT_rich Low_complexity Low_complexity 1 22 0 1792 107 0 4 chr12 82190262 82190505 -61595950 - AluSg SINE Alu -66 244 3 2295 55 10 10 chr12 82191833 82192126 -61594329 - AluY SINE Alu -18 293 1 198 0 0 0 chr12 82192165 82192187 -61594268 + (TAAAAA)n Simple_repeat Simple_repeat 1 22 0 210 226 83 95 chr12 82192368 82192452 -61594003 - MER5A DNA MER1_type 0 189 107 903 198 21 36 chr12 82192536 82192645 -61593810 - MER5A DNA MER1_type 0 189 83 1559 173 54 4 chr12 82192645 82192923 -61593532 - AluJb SINE Alu -12 300 9 903 198 21 36 chr12 82192923 82193005 -61593450 - MER5A DNA MER1_type -106 83 1 597 237 28 23 chr12 82193013 82193190 -61593265 + MER5B DNA MER1_type 1 178 0 840 237 6 6 chr12 82193207 82193380 -61593075 - MER5B DNA MER1_type -1 177 5 506 267 48 46 chr12 82194164 82194356 -61592099 + MIR SINE MIR 61 256 -6 444 311 54 71 chr12 82194485 82194781 -61591674 - L2 LINE L2 -16 3256 2966 720 229 27 27 chr12 82194987 82195175 -61591280 + MER5A DNA MER1_type 1 188 -1 1069 206 135 0 chr12 82195178 82195459 -61590996 + MLT1A1 LTR MaLR 1 319 -46 31 0 0 0 chr12 82196213 82196244 -61590211 + AT_rich Low_complexity Low_complexity 1 31 0 200 59 29 0 chr12 82199032 82199066 -61587389 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2101 121 0 7 chr12 82199073 82199362 -61587093 - AluSx SINE Alu -25 287 1 421 228 32 49 chr12 82200244 82200382 -61586073 - MER5A DNA MER1_type -52 126 4 29 28 0 0 chr12 82202253 82202289 -61584166 + GC_rich Low_complexity Low_complexity 1 36 0 329 315 117 28 chr12 82202805 82203018 -61583437 - L1M2 LINE L1 -5599 1250 1019 256 242 66 0 chr12 82203105 82203196 -61583259 + CT-rich Low_complexity Low_complexity 3 99 0 198 71 0 0 chr12 82204863 82204891 -61581564 + (TG)n Simple_repeat Simple_repeat 1 28 0 3161 164 48 2 chr12 82205469 82206047 -61580408 - MER6A DNA MER2_type 0 605 1 4391 259 76 23 chr12 82207468 82208801 -61577654 - MSTD-int LTR MaLR -331 1404 2 575 272 37 16 chr12 82208808 82208999 -61577456 - MSTD LTR MaLR -5 391 197 2048 197 10 10 chr12 82209902 82210298 -61576157 - MSTD LTR MaLR 0 396 1 1069 156 68 0 chr12 82210298 82210503 -61575952 - MSTD-int LTR MaLR 0 1735 1517 365 186 82 0 chr12 82210636 82210733 -61575722 - MSTD LTR MaLR -289 107 3 23 0 0 0 chr12 82212430 82212453 -61574002 + AT_rich Low_complexity Low_complexity 1 23 0 708 152 20 7 chr12 82214068 82214219 -61572236 + CT-rich Low_complexity Low_complexity 2 154 0 218 81 27 0 chr12 82214248 82214285 -61572170 + (TTTCC)n Simple_repeat Simple_repeat 5 42 0 218 81 27 0 chr12 82214319 82214356 -61572099 + (TTTCC)n Simple_repeat Simple_repeat 5 42 0 338 145 0 14 chr12 82214401 82214470 -61571985 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 279 122 0 0 chr12 82214519 82214568 -61571887 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 799 310 62 22 chr12 82214571 82214894 -61571561 - L2 LINE L2 -887 2427 2092 2276 115 3 0 chr12 82216867 82217172 -61569283 - AluSx SINE Alu -6 306 1 222 188 21 0 chr12 82217178 82217226 -61569229 + MER5B DNA MER1_type 117 165 -13 185 397 98 35 chr12 82218073 82218562 -61567893 + L2 LINE L2 162 681 -2633 276 91 0 0 chr12 82218723 82218767 -61567688 + (A)n Simple_repeat Simple_repeat 1 44 0 312 321 135 65 chr12 82219650 82220139 -61566316 + L2 LINE L2 2008 2530 -784 295 106 47 12 chr12 82220162 82220247 -61566208 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 259 211 132 0 chr12 82221327 82221364 -61565091 + MIR SINE MIR 161 192 -70 2353 54 0 20 chr12 82221364 82221658 -61564797 + AluY SINE Alu 17 304 -7 259 211 132 0 chr12 82221658 82221696 -61564759 + MIR SINE MIR 192 246 -16 450 313 63 83 chr12 82222077 82222428 -61564027 + L2 LINE L2 1948 2291 -1023 244 344 69 15 chr12 82222571 82222702 -61563753 + MIR3 SINE MIR 13 150 -58 403 280 32 16 chr12 82224085 82224210 -61562245 + MIR SINE MIR 19 145 -63 2193 132 0 0 chr12 82224218 82224521 -61561934 + AluSx SINE Alu 1 303 -9 237 309 41 57 chr12 82225007 82225130 -61561325 + MIR3 SINE MIR 3 123 -85 2510 37 7 3 chr12 82225198 82225498 -61560957 + AluY SINE Alu 1 301 -10 942 253 39 9 chr12 82225577 82225810 -61560645 + MIR SINE MIR 19 258 -4 220 274 0 0 chr12 82225810 82225861 -61560594 + (ATG)n Simple_repeat Simple_repeat 2 52 0 322 352 160 14 chr12 82225861 82226074 -61560381 - L3 LINE CR1 -102 1475 1232 247 266 30 77 chr12 82226806 82226975 -61559480 + L2 LINE L2 3152 3312 -1 255 157 0 0 chr12 82227549 82227600 -61558855 + GA-rich Low_complexity Low_complexity 2 52 0 258 222 56 42 chr12 82227800 82227872 -61558583 - L2 LINE L2 0 3313 3241 323 23 23 0 chr12 82229021 82229065 -61557390 + (TG)n Simple_repeat Simple_repeat 2 46 0 450 283 74 107 chr12 82230718 82231231 -61555224 - MLT1L LTR MaLR 0 615 120 2431 61 3 10 chr12 82231589 82231899 -61554556 + AluY SINE Alu 1 308 -3 2160 211 40 38 chr12 82232797 82233329 -61553126 + MLT1F LTR MaLR 8 540 -2 183 200 156 0 chr12 82234077 82234122 -61552333 + L3 LINE CR1 454 505 -1072 24 0 0 0 chr12 82234166 82234190 -61552265 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr12 82235087 82235130 -61551325 + AT_rich Low_complexity Low_complexity 1 43 0 259 292 0 0 chr12 82236120 82236192 -61550263 - MER46C DNA MER2_type -19 319 248 228 320 0 0 chr12 82236201 82236276 -61550179 + (TA)n Simple_repeat Simple_repeat 1 75 0 321 299 0 0 chr12 82236276 82236383 -61550072 - MER46C DNA MER2_type -89 249 143 1792 199 38 48 chr12 82236410 82236459 -61549996 + MLT1D LTR MaLR 31 79 -426 2612 110 3 6 chr12 82236459 82236824 -61549631 - THE1B LTR MaLR 0 364 1 1792 199 38 48 chr12 82236824 82237252 -61549203 + MLT1D LTR MaLR 79 503 -2 266 167 45 0 chr12 82237295 82237361 -61549094 - MER46C DNA MER2_type -269 69 1 1459 206 34 7 chr12 82238653 82238949 -61547506 + AluJo SINE Alu 1 304 -8 21 57 0 0 chr12 82239924 82239959 -61546496 + AT_rich Low_complexity Low_complexity 1 35 0 202 303 121 57 chr12 82240001 82240265 -61546190 - L2 LINE L2 -188 3084 2804 412 282 51 0 chr12 82240462 82240579 -61545876 + MIR SINE MIR 73 195 -67 237 153 51 0 chr12 82241347 82241406 -61545049 + (TA)n Simple_repeat Simple_repeat 2 63 0 1856 123 4 0 chr12 82241682 82241942 -61544513 - AluSx SINE Alu -5 307 47 210 297 89 48 chr12 82243576 82243716 -61542739 - MIR SINE MIR -65 143 34 182 240 120 40 chr12 82244956 82245031 -61541424 - MIR SINE MIR -86 122 42 198 0 0 0 chr12 82245316 82245338 -61541117 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1440 143 70 8 chr12 82247811 82248210 -61538245 - MER21A LTR ERV1 -371 492 48 2877 116 16 5 chr12 82248481 82248904 -61537551 - MSTA LTR MaLR 0 428 1 201 125 0 0 chr12 82248970 82249002 -61537453 - MIR SINE MIR -6 256 225 1660 205 135 26 chr12 82249047 82249500 -61536955 - MLT1D LTR MaLR 0 505 4 623 222 121 56 chr12 82249536 82249734 -61536721 - MIR SINE MIR -3 259 49 209 243 122 27 chr12 82249788 82249862 -61536593 + MIR SINE MIR 42 122 -86 204 385 82 7 chr12 82249907 82250042 -61536413 - MIR SINE MIR -105 157 13 183 346 135 0 chr12 82251837 82251941 -61534514 - MIR SINE MIR -56 152 35 2345 105 0 0 chr12 82252546 82252850 -61533605 + AluSc SINE Alu 1 304 -5 185 321 48 12 chr12 82254024 82254108 -61532347 - L2 LINE L2 -218 3054 2968 277 222 0 78 chr12 82254509 82254599 -61531856 + MIR SINE MIR 168 250 -12 331 210 148 0 chr12 82256434 82256515 -61529940 + L2 LINE L2 3217 3309 -4 213 244 22 0 chr12 82256643 82256688 -61529767 - L3 LINE CR1 -15 1562 1517 281 321 169 25 chr12 82257401 82257644 -61528811 - L3 LINE CR1 -203 1374 1097 2322 97 0 3 chr12 82258269 82258577 -61527878 - AluSc SINE Alu -2 307 1 1738 118 94 14 chr12 82259026 82259313 -61527142 - AluSg SINE Alu 0 310 1 751 161 31 8 chr12 82259333 82259463 -61526992 - AluJb SINE Alu -179 133 1 5816 179 53 9 chr12 82259542 82261125 -61525330 - L1MC1 LINE L1 -11 6716 5062 24 0 0 0 chr12 82263976 82264000 -61522455 + AT_rich Low_complexity Low_complexity 1 24 0 225 255 0 0 chr12 82264580 82264631 -61521824 + GA-rich Low_complexity Low_complexity 1 51 0 375 290 155 24 chr12 82265181 82265388 -61521067 - MIR SINE MIR -16 246 13 390 363 71 0 chr12 82265647 82265829 -61520626 + MIR SINE MIR 11 205 -57 2522 238 55 33 chr12 82267227 82267563 -61518892 - L1MC1 LINE L1 -3060 3480 3153 1358 207 20 17 chr12 82267563 82267858 -61518597 - AluJo SINE Alu -16 296 1 2522 238 55 33 chr12 82267858 82268601 -61517854 - L1MC1 LINE L1 -3387 3153 2411 1613 154 161 0 chr12 82268604 82268902 -61517553 + MER7A DNA MER2_type 3 346 0 920 293 103 94 chr12 82268989 82270148 -61516307 - L1MC1 LINE L1 -4369 2171 1003 3493 77 4 0 chr12 82270184 82270638 -61515817 - L1PA7 LINE L1 -14 6140 5685 1866 57 0 0 chr12 82270638 82270884 -61515571 + L1P LINE L1 4948 5193 -953 229 247 52 0 chr12 82271793 82271870 -61514585 - L1MC1 LINE L1 -5967 563 483 379 299 99 22 chr12 82272128 82272442 -61514013 - L1ME4a LINE L1 -266 5855 5518 198 398 51 11 chr12 82272679 82272855 -61513600 + L2 LINE L2 2703 2885 -429 235 329 61 0 chr12 82273162 82273244 -61513211 + L2 LINE L2 3227 3313 0 1836 125 148 34 chr12 82274312 82274696 -61511759 - MSTA LTR MaLR 0 428 1 222 315 82 68 chr12 82274761 82274907 -61511548 - L2 LINE L2 -21 3251 3104 532 295 162 14 chr12 82275803 82276013 -61510442 + MIR SINE MIR 14 254 -8 2087 111 0 14 chr12 82278523 82278910 -61507545 + AluSc SINE Alu 1 383 0 594 275 36 6 chr12 82279484 82279651 -61506804 - MIR SINE MIR -13 249 78 416 260 58 52 chr12 82280481 82280635 -61505820 - MIR SINE MIR -55 207 53 188 341 0 12 chr12 82281140 82281225 -61505230 + L2 LINE L2 3178 3261 -52 258 299 188 8 chr12 82281303 82281420 -61505035 + MIR SINE MIR 3 140 -122 922 456 13 0 chr12 82281513 82281811 -61504644 + AluSx SINE Alu 1 302 0 1401 162 132 43 chr12 82281834 82281948 -61504507 - THE1B LTR MaLR -34 330 228 2187 111 14 0 chr12 82281948 82282245 -61504210 - AluSx SINE Alu -11 301 1 1401 162 132 43 chr12 82282245 82282433 -61504022 - THE1B LTR MaLR -136 228 1 474 265 12 30 chr12 82283579 82283726 -61502729 + MIR3 SINE MIR 37 174 -34 23 0 0 0 chr12 82285677 82285700 -61500755 + AT_rich Low_complexity Low_complexity 1 23 0 379 242 53 0 chr12 82287036 82287131 -61499324 + MER5A DNA MER1_type 3 102 -87 26 101 0 0 chr12 82287884 82287973 -61498482 + AT_rich Low_complexity Low_complexity 1 89 0 1022 198 40 27 chr12 82288838 82289060 -61497395 + LTR48B LTR ERV1 1 225 -419 31 26 0 0 chr12 82289174 82289212 -61497243 + GC_rich Low_complexity Low_complexity 1 38 0 210 197 30 30 chr12 82289213 82289279 -61497176 + C-rich Low_complexity Low_complexity 1 66 0 350 355 0 27 chr12 82289402 82289585 -61496870 + C-rich Low_complexity Low_complexity 2 179 0 941 208 149 50 chr12 82289713 82290136 -61496319 + LTR48B LTR ERV1 180 644 0 210 118 0 0 chr12 82290964 82290998 -61495457 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2174 110 0 10 chr12 82292646 82292937 -61493518 - AluSx SINE Alu -24 288 1 291 324 9 29 chr12 82293880 82293985 -61492470 + L2 LINE L2 3170 3272 0 28 0 0 0 chr12 82294511 82294539 -61491916 + AT_rich Low_complexity Low_complexity 1 28 0 301 171 71 14 chr12 82296672 82296742 -61489713 + L1ME4a LINE L1 6020 6093 -28 259 277 62 80 chr12 82296799 82296911 -61489544 - L2 LINE L2 -15 3257 3148 654 151 17 0 chr12 82297136 82297255 -61489200 - L1PB4 LINE L1 -2 6154 6034 2058 62 12 4 chr12 82297651 82297910 -61488545 + AluY SINE Alu 51 311 0 559 206 38 0 chr12 82298218 82298349 -61488106 - MER103 DNA DNA -11 155 20 182 211 175 0 chr12 82298441 82298498 -61487957 - MER5C DNA MER1_type -1 323 257 193 189 0 0 chr12 82298616 82298653 -61487802 - MER5C DNA MER1_type -200 124 88 414 247 169 13 chr12 82298740 82298894 -61487561 + MER5A DNA MER1_type 9 186 -3 867 214 176 0 chr12 82298909 82299182 -61487273 - MER33 DNA MER1_type -4 320 1 267 259 0 0 chr12 82299183 82299237 -61487218 + L2 LINE L2 3214 3267 -5 1855 137 35 3 chr12 82300131 82300415 -61486040 - AluSx SINE Alu -8 304 12 308 247 82 31 chr12 82300637 82300734 -61485721 + MIR SINE MIR 102 203 -59 259 281 11 45 chr12 82300794 82300883 -61485572 + L1MC4a LINE L1 5497 5582 -539 294 232 137 33 chr12 82300970 82301139 -61485316 + L1MC4a LINE L1 5709 5893 -228 707 172 0 140 chr12 82304083 82304269 -61482186 + FRAM SINE Alu 1 156 -20 1164 186 199 25 chr12 82304353 82304745 -61481710 - MLT1C LTR MaLR -7 460 1 197 349 72 40 chr12 82304771 82304846 -61481609 - L2 LINE L2 0 3272 3201 2189 103 7 0 chr12 82304846 82305137 -61481318 + AluSx SINE Alu 6 298 -14 197 349 72 40 chr12 82305137 82305213 -61481242 - L2 LINE L2 -71 3201 3116 537 192 89 14 chr12 82305373 82305519 -61480936 + MER103 DNA DNA 3 159 -7 1573 202 3 26 chr12 82306352 82306654 -61479801 - AluJo SINE Alu -17 295 1 23 78 0 0 chr12 82308764 82308815 -61477640 + AT_rich Low_complexity Low_complexity 1 51 0 2801 231 75 8 chr12 82309085 82310076 -61476379 - L1ME1 LINE L1 -5 6161 5099 451 359 57 10 chr12 82310880 82311089 -61475366 + MIR SINE MIR 28 246 -16 884 231 30 0 chr12 82312669 82312868 -61473587 - MER3 DNA MER1_type -3 206 2 1679 172 0 33 chr12 82313544 82313846 -61472609 + AluJb SINE Alu 1 292 -20 21 57 0 0 chr12 82315524 82315559 -61470896 + AT_rich Low_complexity Low_complexity 1 35 0 2269 102 0 3 chr12 82316007 82316311 -61470144 - AluY SINE Alu -8 303 1 231 180 80 0 chr12 82316562 82316612 -61469843 - MLT1I LTR MaLR 0 409 356 467 241 184 7 chr12 82316659 82316800 -61469655 - MLT1I LTR MaLR -151 258 93 1481 188 102 10 chr12 82317006 82317320 -61469135 - MER2 DNA MER2_type -1 343 1 242 157 0 20 chr12 82317324 82317375 -61469080 + (TA)n Simple_repeat Simple_repeat 1 50 0 659 248 124 0 chr12 82317588 82317790 -61468665 + MIR SINE MIR 20 246 -16 602 289 81 25 chr12 82318355 82318590 -61467865 - MIR SINE MIR -2 260 13 694 213 109 50 chr12 82319799 82320038 -61466417 + MIR SINE MIR 9 261 -1 1615 165 13 32 chr12 82320129 82320438 -61466017 - AluSx SINE Alu -9 303 1 5369 70 1 0 chr12 82321960 82322657 -61463798 - L1PA8 LINE L1 -1 6171 5474 7114 52 11 0 chr12 82322661 82323681 -61462774 - L1PA7 LINE L1 -10 6144 5124 3097 137 21 0 chr12 82323681 82323756 -61462699 - L1P3 LINE L1 -5969 492 420 206 81 27 0 chr12 82323756 82323793 -61462662 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3097 137 21 0 chr12 82323793 82324199 -61462256 - L1P3 LINE L1 -6041 420 1 * 20667 97 18 6 chr12 82324170 82327350 -61459105 - L1P3 LINE L1 -647 5840 2634 238 319 93 3 chr12 82327501 82327689 -61458766 + MIR3 SINE MIR 10 262 0 1361 163 53 0 chr12 82328173 82328418 -61458037 - L1PB4 LINE L1 -5 6151 5894 864 204 0 23 chr12 82329315 82329491 -61456964 - FRAM SINE Alu -10 166 1 249 316 54 30 chr12 82329762 82329930 -61456525 - MARNA DNA Mariner -29 557 386 266 231 66 0 chr12 82329966 82330057 -61456398 + MARNA DNA Mariner 259 355 -231 1197 170 5 27 chr12 82331121 82331345 -61455110 + MER20 DNA MER1_type 1 219 0 2045 121 0 0 chr12 82331655 82331928 -61454527 + AluSx SINE Alu 1 273 -39 180 0 0 0 chr12 82331929 82331949 -61454506 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 378 0 0 0 chr12 82331948 82331990 -61454465 + (CA)n Simple_repeat Simple_repeat 1 42 0 1772 237 65 60 chr12 82334801 82335418 -61451037 - MLT1E2 LTR MaLR 0 626 7 475 301 70 0 chr12 82335759 82335945 -61450510 + MER46C DNA MER2_type 82 280 -58 1977 160 0 7 chr12 82335953 82336260 -61450195 - AluSx SINE Alu -7 305 1 23 86 0 0 chr12 82337751 82337809 -61448646 + AT_rich Low_complexity Low_complexity 1 58 0 249 304 43 14 chr12 82338028 82338097 -61448358 + Charlie1 DNA MER1_type 1 71 -2690 1039 204 119 36 chr12 82338102 82338464 -61447991 + Charlie1 DNA MER1_type 2364 2755 -6 23 54 0 0 chr12 82338914 82338951 -61447504 + AT_rich Low_complexity Low_complexity 1 37 0 572 278 123 45 chr12 82338963 82339224 -61447231 - L1ME2 LINE L1 -280 5884 5645 2007 191 112 7 chr12 82339224 82339679 -61446776 - MLT1D LTR MaLR 0 505 3 572 278 123 45 chr12 82339679 82339903 -61446552 - L1ME2 LINE L1 -519 5645 5361 501 17 0 0 chr12 82341163 82341221 -61445234 + (TATAG)n Simple_repeat Simple_repeat 5 62 0 228 323 38 15 chr12 82341260 82341393 -61445062 - MLT1K LTR MaLR 0 588 453 2128 118 13 7 chr12 82341401 82341705 -61444750 - AluSq SINE Alu -7 306 1 229 254 55 0 chr12 82341895 82341950 -61444505 + MIR SINE MIR 118 175 -87 1755 221 52 48 chr12 82341953 82342468 -61443987 - LTR40a LTR ERVL 0 519 3 799 282 65 21 chr12 82342470 82342810 -61443645 - HERVL40 LTR ERVL 0 5530 2783 464 278 36 46 chr12 82343439 82343633 -61442822 + L2 LINE L2 3122 3313 0 1306 149 32 24 chr12 82343947 82344195 -61442260 + L1MB3 LINE L1 5931 6180 -3 792 246 42 42 chr12 82344239 82344454 -61442001 + MIR SINE MIR 48 262 0 190 372 93 0 chr12 82344808 82344894 -61441561 + L2 LINE L2 3143 3236 -36 514 284 125 0 chr12 82344926 82345134 -61441321 + MIR SINE MIR 28 261 -1 272 295 74 32 chr12 82345245 82345340 -61441115 - MLT1J2 LTR MaLR -119 331 233 21 57 0 0 chr12 82345569 82345604 -61440851 + AT_rich Low_complexity Low_complexity 1 35 0 21866 152 29 25 chr12 82346530 82351604 -61434851 + L1MA3 LINE L1 15 5069 -2655 387 0 0 0 chr12 82351604 82351647 -61434808 + (CA)n Simple_repeat Simple_repeat 2 44 0 21866 152 29 25 chr12 82351647 82353972 -61432483 + L1MA3 LINE L1 5069 7450 -274 2046 129 3 59 chr12 82353972 82354329 -61432126 - MER1B DNA MER1_type 0 337 1 21866 152 29 25 chr12 82354329 82354595 -61431860 + L1MA3 LINE L1 7450 7714 -10 3356 174 40 16 chr12 82354984 82355925 -61430530 - L1MA9 LINE L1 -392 5920 4965 213 262 68 68 chr12 82356591 82356694 -61429761 + MIR SINE MIR 2 104 -158 314 245 72 43 chr12 82356716 82356855 -61429600 - MIR SINE MIR -1 261 119 195 310 35 11 chr12 82356830 82356917 -61429538 + MIR SINE MIR 70 158 -104 * 2057 91 4 0 chr12 82356944 82357220 -61429235 + L1PA8 LINE L1 5886 6162 -10 204 122 61 0 chr12 82357352 82357401 -61429054 + (TA)n Simple_repeat Simple_repeat 1 52 0 40121 69 7 5 chr12 82358470 82363627 -61422828 + L1PA5 LINE L1 13 5184 -983 288 0 0 0 chr12 82363627 82363659 -61422796 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 40121 69 7 5 chr12 82363659 82364646 -61421809 + L1PA5 LINE L1 5184 6167 0 413 328 134 22 chr12 82365714 82366071 -61420384 + L2 LINE L2 2913 3309 -4 641 283 26 43 chr12 82366152 82366382 -61420073 - MIR SINE MIR -8 254 29 1713 60 0 36 chr12 82366685 82366933 -61419522 - L1PA4 LINE L1 0 6155 5917 349 255 52 46 chr12 82367100 82367253 -61419202 + MLT1J LTR MaLR 279 432 -79 2334 107 0 0 chr12 82369732 82370040 -61416415 + AluSg1 SINE Alu 1 308 -1 351 234 45 36 chr12 82370397 82370508 -61415947 + MIR SINE MIR 93 204 -58 479 17 17 0 chr12 82370514 82370574 -61415881 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 5936 163 40 14 chr12 82371332 82373399 -61413056 + L1MA7 LINE L1 4168 6278 -13 602 215 52 52 chr12 82373770 82373942 -61412513 + MER69A DNA AcHobo 3 174 -3 463 161 0 12 chr12 82374245 82374326 -61412129 + MER3 DNA MER1_type 35 114 -95 309 267 0 10 chr12 82374366 82374467 -61411988 + MER3 DNA MER1_type 2485 2584 0 450 355 121 22 chr12 82374473 82374836 -61411619 + L2 LINE L2 2222 2620 -694 21 0 0 0 chr12 82375388 82375409 -61411046 + AT_rich Low_complexity Low_complexity 1 21 0 419 230 0 0 chr12 82377028 82377115 -61409340 + MIR SINE MIR 166 252 -10 4916 104 38 35 chr12 82377355 82378207 -61408248 - L1MA2 LINE L1 0 6304 5451 335 289 55 2 chr12 82378438 82378562 -61407893 + MIR SINE MIR 42 173 -62 219 146 0 0 chr12 82380024 82380050 -61406405 + (TG)n Simple_repeat Simple_repeat 2 30 -19 2586 113 39 14 chr12 82380050 82380466 -61405989 + MSTA LTR MaLR 2 427 -1 219 146 0 0 chr12 82380466 82380487 -61405968 + (TG)n Simple_repeat Simple_repeat 29 49 0 292 161 54 0 chr12 82380960 82381016 -61405439 - L2 LINE L2 0 3272 3214 2434 68 0 3 chr12 82382063 82382356 -61404099 - AluY SINE Alu -19 292 1 500 157 7 100 chr12 82383149 82383289 -61403166 + FLAM_A SINE Alu 1 127 -6 979 228 64 4 chr12 82383409 82383721 -61402734 - MER33 DNA MER1_type 0 324 1 1481 142 0 136 chr12 82387401 82387717 -61398738 - AluJb SINE Alu -39 273 1 353 326 50 6 chr12 82389263 82389444 -61397011 + Charlie8 DNA MER1_type 77 265 -2152 292 203 51 38 chr12 82389462 82389541 -61396914 + MER63 DNA MER1_type 1 706 -130 2111 160 9 9 chr12 82389857 82390194 -61396261 + MER1B DNA MER1_type 1 337 0 190 287 130 9 chr12 82391060 82391165 -61395290 - L3 LINE CR1 -211 1366 1249 236 286 63 32 chr12 82391165 82391291 -61395164 + MIR SINE MIR 2 131 -131 28 0 0 0 chr12 82391786 82391814 -61394641 + AT_rich Low_complexity Low_complexity 1 28 0 469 325 95 50 chr12 82392209 82392652 -61393803 - LTR67 LTR ERVL -59 498 36 890 217 46 0 chr12 82392787 82392962 -61393493 + MER5A DNA MER1_type 1 183 -6 192 328 0 0 chr12 82393585 82393643 -61392812 - L2 LINE L2 0 3313 3256 2285 131 22 3 chr12 82394046 82394404 -61392051 - MLT1A1 LTR MaLR 0 365 1 235 218 36 0 chr12 82394777 82394832 -61391623 - MIR SINE MIR -143 119 63 249 295 77 0 chr12 82394892 82394970 -61391485 - MIR SINE MIR -118 144 61 793 214 17 17 chr12 82395636 82395814 -61390641 - MER45A DNA AcHobo 0 178 1 2129 130 7 0 chr12 82395980 82396281 -61390174 - AluSq SINE Alu -10 303 1 430 294 94 56 chr12 82397613 82397847 -61388608 - MIR SINE MIR -9 253 5 291 314 58 50 chr12 82398106 82398227 -61388228 - L2 LINE L2 0 3272 3151 220 23 0 93 chr12 82398584 82398627 -61387828 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 357 242 0 22 chr12 82398627 82398718 -61387737 + L1MC4 LINE L1 6615 6703 -1339 354 229 138 0 chr12 82398768 82398877 -61387578 - MLT1H1 LTR MaLR -2 553 430 * 517 310 35 0 chr12 82398873 82399015 -61387440 - MLT1H1 LTR MaLR -360 195 49 182 205 26 0 chr12 82399644 82399683 -61386772 - L2 LINE L2 -9 3263 3224 6652 42 0 12 chr12 82400108 82400934 -61385521 + L1PA5 LINE L1 5339 6154 0 2638 55 0 0 chr12 82400972 82401283 -61385172 + AluY SINE Alu 1 311 0 202 358 150 17 chr12 82401290 82401410 -61385045 + MIR SINE MIR 32 167 -41 719 307 12 31 chr12 82402203 82402460 -61383995 - MLT1K LTR MaLR -55 533 282 188 312 40 64 chr12 82402923 82403048 -61383407 - MER5A DNA MER1_type -1 188 67 * 491 255 39 46 chr12 82402951 82403104 -61383351 + MER5B DNA MER1_type 27 178 0 389 290 0 0 chr12 82403624 82403717 -61382738 + L2 LINE L2 3216 3308 -5 183 278 0 19 chr12 82403801 82403855 -61382600 - MIR SINE MIR 0 262 210 204 211 39 0 chr12 82403857 82403909 -61382546 + (CATA)n Simple_repeat Simple_repeat 3 56 0 478 305 21 0 chr12 82403929 82404073 -61382382 - MIR SINE MIR -61 147 31 316 290 47 9 chr12 82404155 82404262 -61382193 + L2 LINE L2 3128 3238 -75 298 325 103 49 chr12 82404454 82404696 -61381759 + L2 LINE L2 2426 2700 -614 957 215 37 14 chr12 82404696 82404910 -61381545 + MER20 DNA MER1_type 1 219 0 298 325 103 49 chr12 82404910 82405076 -61381379 + L2 LINE L2 2700 2856 -458 468 274 9 0 chr12 82405207 82405313 -61381142 - L2 LINE L2 -6 3307 3201 207 103 0 26 chr12 82405489 82405528 -61380927 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 337 245 82 69 chr12 82405696 82405929 -61380526 - L1MC5 LINE L1 -465 7496 7261 452 291 76 8 chr12 82406051 82406288 -61380167 - L1MC5 LINE L1 -727 7234 6982 239 286 0 0 chr12 82406594 82406643 -61379812 - L2 LINE L2 -9 3263 3215 286 309 193 53 chr12 82407500 82407707 -61378748 - MIR SINE MIR -12 250 15 24 32 0 0 chr12 82407919 82407950 -61378505 + AT_rich Low_complexity Low_complexity 1 31 0 381 274 157 10 chr12 82408195 82408392 -61378063 + MER112 DNA MER1_type 4 229 -31 210 37 0 0 chr12 82408778 82408805 -61377650 + (TC)n Simple_repeat Simple_repeat 2 28 0 266 378 70 0 chr12 82408832 82408975 -61377480 + L2 LINE L2 1774 1926 -1388 200 233 0 0 chr12 82409887 82409930 -61376525 + (TAA)n Simple_repeat Simple_repeat 2 44 0 391 342 0 0 chr12 82409988 82410102 -61376353 + L2 LINE L2 3156 3269 -3 215 331 116 0 chr12 82410280 82410401 -61376054 - MIR SINE MIR -74 188 54 209 286 0 0 chr12 82410489 82410538 -61375917 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1972 124 0 38 chr12 82411897 82412214 -61374241 - AluSx SINE Alu 0 310 5 584 285 41 36 chr12 82412407 82412628 -61373827 + MIR SINE MIR 12 233 -29 231 61 0 0 chr12 82412841 82412874 -61373581 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 29 chr12 82413751 82413766 -61372689 + AT_rich Low_complexity Low_complexity 1 15 -18 2852 3 0 3 chr12 82413766 82414078 -61372377 - AluYa5 SINE Alu 0 311 1 23 0 0 29 chr12 82414078 82414096 -61372359 + AT_rich Low_complexity Low_complexity 15 33 0 558 312 130 39 chr12 82414410 82415117 -61371338 - L2 LINE L2 0 3313 2528 207 268 70 0 chr12 82415120 82415191 -61371264 + MIR SINE MIR 115 190 -72 258 315 293 5 chr12 82415957 82416179 -61370276 - L2 LINE L2 -781 2533 2248 34 0 0 0 chr12 82417442 82417476 -61368979 + AT_rich Low_complexity Low_complexity 1 34 0 199 405 95 38 chr12 82417632 82418247 -61368208 + L2 LINE L2 2538 3192 -80 1733 270 39 29 chr12 82418309 82418791 -61367664 - MLT1G LTR MaLR 0 590 104 1963 195 73 36 chr12 82418795 82419261 -61367194 - MLT1D LTR MaLR 0 505 23 337 247 0 0 chr12 82419442 82419519 -61366936 - MLT1G LTR MaLR -488 79 3 1428 220 31 36 chr12 82419972 82420363 -61366092 + MLT1B LTR MaLR 2 390 0 1939 186 35 26 chr12 82421914 82422366 -61364089 + L1MB8 LINE L1 4873 5328 -818 31802 107 16 55 chr12 82422375 82428770 -61357685 + L1PA7 LINE L1 12 6143 -11 2605 197 49 3 chr12 82428797 82429370 -61357085 + L1MB8 LINE L1 5318 5916 -262 1483 176 10 50 chr12 82429413 82429670 -61356785 - AluJb SINE Alu -8 304 59 1962 119 39 0 chr12 82429670 82429955 -61356500 + AluSx SINE Alu 1 296 -16 1483 176 10 50 chr12 82429955 82429998 -61356457 - AluJb SINE Alu -253 59 16 979 103 0 48 chr12 82430170 82430365 -61356090 + AluSg/x SINE Alu 145 332 0 1457 181 27 40 chr12 82430631 82430930 -61355525 + AluJo SINE Alu 1 295 -17 41 36 0 0 chr12 82430986 82431041 -61355414 + AT_rich Low_complexity Low_complexity 1 55 0 186 224 0 0 chr12 82432529 82432578 -61353877 + GA-rich Low_complexity Low_complexity 2 50 0 363 303 152 28 chr12 82434136 82434347 -61352108 - MLT1J LTR MaLR -272 239 3 319 265 108 42 chr12 82435843 82436009 -61350446 - MER20B DNA MER1_type -604 179 3 21 0 0 0 chr12 82436043 82436064 -61350391 + AT_rich Low_complexity Low_complexity 1 21 0 510 305 85 72 chr12 82436392 82436935 -61349520 - L1ME3A LINE L1 -222 5948 5384 1759 174 155 11 chr12 82436935 82437309 -61349146 - MSTA LTR MaLR 0 428 1 510 305 85 72 chr12 82437309 82437422 -61349033 - L1ME3A LINE L1 -786 5384 5274 7290 174 122 17 chr12 82437448 82439036 -61347419 + MER52A LTR ERV1 1 1755 0 578 280 61 27 chr12 82439275 82439604 -61346851 - L1ME3A LINE L1 -1308 4838 4499 39 0 0 0 chr12 82440260 82440299 -61346156 + AT_rich Low_complexity Low_complexity 1 39 0 764 257 69 49 chr12 82440877 82441223 -61345232 + L1ME3 LINE L1 5802 6154 -8 552 56 0 0 chr12 82441266 82441338 -61345117 + (TC)n Simple_repeat Simple_repeat 2 73 0 1834 139 36 0 chr12 82441341 82441615 -61344840 - AluY SINE Alu -27 284 1 221 222 0 0 chr12 82442205 82442250 -61344205 + L2 LINE L2 2224 2268 -1046 2271 78 3 0 chr12 82442357 82442650 -61343805 + AluY SINE Alu 1 294 -17 23 78 0 0 chr12 82443739 82443790 -61342665 + AT_rich Low_complexity Low_complexity 1 51 0 181 336 103 19 chr12 82443923 82444030 -61342425 + L2 LINE L2 3134 3249 -23 2463 41 41 0 chr12 82444213 82444507 -61341948 + AluYa5 SINE Alu 1 306 -5 1738 261 61 52 chr12 82444766 82445516 -61340939 - L1ME3 LINE L1 0 6162 5403 2436 48 7 0 chr12 82445516 82445807 -61340648 - AluY SINE Alu -16 295 3 1738 261 61 52 chr12 82445807 82445860 -61340595 - L1ME3 LINE L1 -759 5403 5352 1269 232 71 32 chr12 82445877 82446257 -61340198 - L1MD2 LINE L1 -19 6340 5946 2529 254 80 53 chr12 82446292 82447837 -61338618 - L1ME3 LINE L1 -841 5305 3720 286 370 48 29 chr12 82447980 82448253 -61338202 + L2 LINE L2 2481 2758 -556 194 384 23 0 chr12 82448247 82448333 -61338122 + L2 LINE L2 2877 2964 -308 * 400 316 233 31 chr12 82448601 82448918 -61337537 + L3 LINE CR1 1074 1454 -123 203 288 0 15 chr12 82448978 82449044 -61337411 - MER5B DNA MER1_type -113 65 1 254 359 13 45 chr12 82449075 82449231 -61337224 - MER5A DNA MER1_type -22 167 17 * 271 385 0 8 chr12 82449103 82449233 -61337222 + MER5B DNA MER1_type 50 178 0 325 277 54 18 chr12 82449267 82449379 -61337076 + L3 LINE CR1 423 538 -1039 286 341 116 6 chr12 82449372 82449536 -61336919 + MIR SINE MIR 26 207 -55 * 24 53 0 0 chr12 82449749 82449787 -61336668 + AT_rich Low_complexity Low_complexity 1 38 0 186 123 53 0 chr12 82453018 82453075 -61333380 + (TA)n Simple_repeat Simple_repeat 2 61 0 539 282 167 0 chr12 82456157 82456313 -61330142 + MER5A DNA MER1_type 4 185 -4 757 288 23 9 chr12 82456315 82456530 -61329925 + LTR16C LTR ERVL 274 491 0 1053 203 209 18 chr12 82457338 82457668 -61328787 - MSTD LTR MaLR -3 393 1 352 277 151 8 chr12 82457772 82457891 -61328564 + MIR SINE MIR 1 136 -126 369 0 0 0 chr12 82458209 82458250 -61328205 + (CA)n Simple_repeat Simple_repeat 2 42 0 242 300 36 0 chr12 82458781 82458891 -61327564 + L1MC4 LINE L1 7924 8037 -5 491 290 37 99 chr12 82461692 82462095 -61324360 + L2 LINE L2 2690 3077 -236 24 0 0 0 chr12 82462410 82462434 -61324021 + AT_rich Low_complexity Low_complexity 1 24 0 1572 163 22 22 chr12 82463512 82463788 -61322667 - MER1B DNA MER1_type -63 276 1 2546 47 0 0 chr12 82463868 82464167 -61322288 + AluY SINE Alu 1 299 -12 1050 189 37 0 chr12 82464660 82464851 -61321604 - MER3 DNA MER1_type -2 207 10 30 69 0 0 chr12 82465117 82465175 -61321280 + AT_rich Low_complexity Low_complexity 1 58 0 438 337 61 6 chr12 82465795 82465958 -61320497 - MIR3 SINE MIR -9 199 28 1788 169 14 17 chr12 82466118 82466408 -61320047 - AluJb SINE Alu -23 289 1 221 306 83 0 chr12 82466601 82466673 -61319782 + L2 LINE L2 3195 3272 0 21 57 0 0 chr12 82466778 82466813 -61319642 + AT_rich Low_complexity Low_complexity 1 35 0 761 123 0 8 chr12 82467260 82467382 -61319073 - THE1C-int LTR MaLR -1459 121 1 2356 129 8 24 chr12 82467382 82467763 -61318692 - THE1C LTR MaLR 0 375 1 562 264 171 9 chr12 82467816 82468032 -61318423 + MIR SINE MIR 12 262 0 2072 98 7 0 chr12 82468367 82468654 -61317801 + L1PA13 LINE L1 5855 6143 -20 346 285 36 15 chr12 82468852 82468989 -61317466 + MIR SINE MIR 110 249 -13 311 304 7 7 chr12 82469703 82469841 -61316614 + (TA)n Simple_repeat Simple_repeat 2 139 0 315 85 0 0 chr12 82471248 82471295 -61315160 + (TG)n Simple_repeat Simple_repeat 2 48 0 2048 93 0 81 chr12 82471442 82471765 -61314690 - AluSc SINE Alu -12 297 1 3709 171 43 7 chr12 82472917 82473659 -61312796 + L1MA9 LINE L1 5513 6281 -31 384 280 119 12 chr12 82474079 82474247 -61312208 + MIR SINE MIR 12 197 -65 23 0 0 0 chr12 82474564 82474587 -61311868 + AT_rich Low_complexity Low_complexity 1 23 0 183 352 56 0 chr12 82475582 82475653 -61310802 - L2 LINE L2 -5 3308 3234 413 280 38 64 chr12 82476187 82476533 -61309922 - L1ME4a LINE L1 -237 5884 5548 707 138 0 0 chr12 82476564 82476680 -61309775 - L1MA10 LINE L1 -12 6322 6207 1916 166 9 81 chr12 82476780 82477253 -61309202 - L1MA10 LINE L1 -130 6204 5774 946 246 19 42 chr12 82479053 82479317 -61307138 - MIR SINE MIR 0 262 5 202 324 150 35 chr12 82479535 82479908 -61306547 - L2 LINE L2 -417 2897 2482 231 295 32 11 chr12 82479996 82480091 -61306364 - MLT1J LTR MaLR -54 457 361 654 268 60 0 chr12 82480129 82480297 -61306158 - MLT1J LTR MaLR -333 178 1 272 335 171 34 chr12 82480326 82480648 -61305807 - L2 LINE L2 -905 2409 2044 181 163 41 0 chr12 82481742 82481791 -61304664 + CT-rich Low_complexity Low_complexity 3 53 0 26 30 0 0 chr12 82482491 82482524 -61303931 + AT_rich Low_complexity Low_complexity 1 33 0 181 242 152 15 chr12 82483214 82483280 -61303175 + MIR SINE MIR 112 186 -76 1108 110 7 0 chr12 82483693 82483847 -61302608 + AluSp SINE Alu 144 298 -15 335 259 192 10 chr12 82484399 82484592 -61301863 + L2 LINE L2 3078 3305 -8 228 390 45 7 chr12 82484808 82484962 -61301493 - MLT1K LTR MaLR -290 298 139 330 337 34 67 chr12 82485727 82485905 -61300550 + L2 LINE L2 3088 3259 -13 331 336 15 8 chr12 82486781 82486912 -61299543 + MIR3 SINE MIR 4 135 -73 189 326 0 0 chr12 82487322 82487371 -61299084 + MER5B DNA MER1_type 1 49 -129 840 251 5 0 chr12 82487500 82487687 -61298768 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr12 82489064 82489085 -61297370 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 82489443 82489473 -61296982 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 82489619 82489648 -61296807 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr12 82490158 82490188 -61296267 + AT_rich Low_complexity Low_complexity 1 30 0 2800 86 5 3 chr12 82490746 82491120 -61295335 + THE1C LTR MaLR 1 375 0 450 107 0 0 chr12 82492065 82492140 -61294315 - Alu SINE Alu -3 309 235 798 160 23 0 chr12 82492167 82492298 -61294157 - MER20 DNA MER1_type -85 134 1 29 0 0 0 chr12 82492445 82492474 -61293981 + AT_rich Low_complexity Low_complexity 1 29 0 683 268 81 17 chr12 82492598 82492833 -61293622 + MIR SINE MIR 12 261 -1 203 314 10 69 chr12 82492935 82493037 -61293418 - L2 LINE L2 -224 3048 2953 2062 194 79 16 chr12 82493232 82493723 -61292732 - L1PA16 LINE L1 -1 6165 5644 372 285 0 46 chr12 82493723 82493853 -61292602 - HSMAR2 DNA Mariner -814 488 365 380 242 0 18 chr12 82494286 82494451 -61292004 + G-rich Low_complexity Low_complexity 1 162 0 307 254 30 15 chr12 82494481 82494615 -61291840 + (CGGGG)n Simple_repeat Simple_repeat 2 137 0 298 339 43 11 chr12 82494682 82494868 -61291587 + L1ME3 LINE L1 4783 4974 -1172 1269 232 71 32 chr12 82495171 82495551 -61290904 + L1MD2 LINE L1 5946 6340 -19 1702 263 65 51 chr12 82495568 82495621 -61290834 + L1ME3 LINE L1 5352 5403 -759 2436 48 7 0 chr12 82495621 82495912 -61290543 + AluY SINE Alu 3 295 -16 1702 263 65 51 chr12 82495912 82496658 -61289797 + L1ME3 LINE L1 5403 6162 0 181 310 35 0 chr12 82496796 82496854 -61289601 - L3 LINE CR1 -1294 283 224 2616 33 0 3 chr12 82496917 82497220 -61289235 - AluYa5 SINE Alu -9 302 1 548 316 136 36 chr12 82497552 82498258 -61288197 - L2 LINE L2 0 3313 2528 207 268 70 0 chr12 82498261 82498332 -61288123 + MIR SINE MIR 115 190 -72 258 315 293 5 chr12 82499098 82499320 -61287135 - L2 LINE L2 -781 2533 2248 34 0 0 0 chr12 82500583 82500617 -61285838 + AT_rich Low_complexity Low_complexity 1 34 0 199 405 95 38 chr12 82500773 82501388 -61285067 + L2 LINE L2 2538 3192 -80 1733 270 39 29 chr12 82501450 82501932 -61284523 - MLT1G LTR MaLR 0 590 104 1963 195 73 36 chr12 82501936 82502402 -61284053 - MLT1D LTR MaLR 0 505 23 337 247 0 0 chr12 82502583 82502660 -61283795 - MLT1G LTR MaLR -488 79 3 1428 220 31 36 chr12 82503113 82503504 -61282951 + MLT1B LTR MaLR 2 390 0 1911 186 38 27 chr12 82505055 82505506 -61280949 + L1MB2 LINE L1 4873 5328 -818 24532 121 19 76 chr12 82505515 82510182 -61276273 + L1P LINE L1 12 4413 -1733 1180 174 182 24 chr12 82511673 82512013 -61274442 + L1MB2 LINE L1 5769 6162 -9 186 224 0 0 chr12 82514040 82514089 -61272366 + GA-rich Low_complexity Low_complexity 2 50 0 1169 233 162 24 chr12 82514514 82514965 -61271490 + L1MA9 LINE L1 5646 6158 -154 459 270 38 50 chr12 82515839 82515998 -61270457 - MIR SINE MIR -105 157 1 240 259 196 69 chr12 82516186 82516375 -61270080 - LTR40a LTR ERVL -16 503 291 1172 132 168 0 chr12 82516624 82516821 -61269634 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr12 82517315 82517343 -61269112 + AT_rich Low_complexity Low_complexity 1 28 0 277 358 40 14 chr12 82518530 82518678 -61267777 - MER5A DNA MER1_type -34 155 4 221 228 25 63 chr12 82518678 82518739 -61267716 - MIR3 SINE MIR -52 156 99 417 308 53 0 chr12 82519012 82519145 -61267310 - MLT1L LTR MaLR -357 258 119 300 304 43 118 chr12 82519520 82519643 -61266812 - L2 LINE L2 -32 3240 3109 1031 179 111 98 chr12 82519643 82520011 -61266444 - MLT1A2 LTR MaLR 0 374 2 300 304 43 118 chr12 82520011 82520209 -61266246 - L2 LINE L2 -163 3109 2943 570 350 40 12 chr12 82520378 82520707 -61265748 - L2 LINE L2 -576 2738 2401 21 57 0 0 chr12 82521120 82521155 -61265300 + AT_rich Low_complexity Low_complexity 1 35 0 1156 302 44 24 chr12 82521160 82521611 -61264844 + L1PB4 LINE L1 13 472 -6377 12510 206 19 10 chr12 82521646 82524003 -61262452 + L1PB4 LINE L1 3030 5431 -1427 213 39 0 0 chr12 82524003 82524029 -61262426 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 12510 206 19 10 chr12 82524029 82525457 -61260998 + L1PB4 LINE L1 5431 6844 -14 189 154 0 0 chr12 82526320 82526359 -61260096 + T-rich Low_complexity Low_complexity 1 39 0 2677 239 70 41 chr12 82526845 82527618 -61258837 - MER21B LTR ERV1 -51 812 18 318 306 55 17 chr12 82527643 82527785 -61258670 - MLT1I LTR MaLR -38 408 243 667 270 56 15 chr12 82528445 82528641 -61257814 + MIR SINE MIR 34 237 -25 22 35 0 0 chr12 82528654 82528683 -61257772 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 82531259 82531284 -61255171 + AT_rich Low_complexity Low_complexity 1 25 0 399 204 129 20 chr12 82531431 82531578 -61254877 + L1MC5 LINE L1 7749 7911 -50 215 325 18 35 chr12 82534289 82534458 -61251997 + CT-rich Low_complexity Low_complexity 3 168 0 733 328 62 19 chr12 82535130 82535450 -61251005 - MLT1J LTR MaLR -79 432 99 363 303 152 28 chr12 82536549 82536760 -61249695 - MLT1J LTR MaLR -272 239 3 292 271 108 42 chr12 82538256 82538422 -61248033 - MER20B DNA MER1_type -604 179 3 21 0 0 0 chr12 82538456 82538477 -61247978 + AT_rich Low_complexity Low_complexity 1 21 0 498 313 103 45 chr12 82538805 82539348 -61247107 - L1ME3A LINE L1 -222 5948 5369 1773 171 155 11 chr12 82539348 82539722 -61246733 - MSTA LTR MaLR 0 428 1 498 313 103 45 chr12 82539722 82539753 -61246702 - L1ME3A LINE L1 -801 5369 5341 7261 176 122 17 chr12 82539861 82541449 -61245006 + MER52A LTR ERV1 1 1755 0 582 274 61 33 chr12 82541688 82542017 -61244438 - L1ME3A LINE L1 -1310 4836 4499 39 0 0 0 chr12 82542673 82542712 -61243743 + AT_rich Low_complexity Low_complexity 1 39 0 780 254 69 49 chr12 82543290 82543636 -61242819 + L1ME3 LINE L1 5802 6154 -8 489 62 0 0 chr12 82543679 82543744 -61242711 + (TC)n Simple_repeat Simple_repeat 1 65 0 1819 144 36 0 chr12 82543744 82544022 -61242433 - AluY SINE Alu -23 288 1 221 222 0 0 chr12 82544613 82544658 -61241797 + L2 LINE L2 2224 2268 -1046 2258 78 3 0 chr12 82544765 82545058 -61241397 + AluY SINE Alu 1 294 -17 23 78 0 0 chr12 82546147 82546198 -61240257 + AT_rich Low_complexity Low_complexity 1 51 0 181 336 103 19 chr12 82546331 82546438 -61240017 + L2 LINE L2 3134 3249 -23 2164 123 3 0 chr12 82546621 82546922 -61239533 + AluSx SINE Alu 1 302 -10 602 241 0 0 chr12 82546925 82547033 -61239422 - FLAM_A SINE Alu -34 108 1 717 327 16 12 chr12 82547366 82547623 -61238832 - MIR SINE MIR 0 262 5 3088 42 7 32 chr12 82547717 82547859 -61238596 + L1P3 LINE L1 5351 5495 -659 1999 116 3 10 chr12 82547859 82548162 -61238293 + AluY SINE Alu 1 301 -10 3088 42 7 32 chr12 82548162 82548426 -61238029 + L1P3 LINE L1 5495 5747 -407 2118 126 3 0 chr12 82548888 82549182 -61237273 - AluSx SINE Alu -17 295 1 290 254 0 27 chr12 82549728 82549913 -61236542 + C-rich Low_complexity Low_complexity 1 180 0 980 116 68 43 chr12 82550078 82550190 -61236265 - HSMAR2 DNA Mariner -1090 212 91 2019 97 8 4 chr12 82550190 82550457 -61235998 + AluSq SINE Alu 1 268 -45 980 116 68 43 chr12 82550457 82550551 -61235904 - HSMAR2 DNA Mariner -1211 91 1 387 267 113 13 chr12 82550598 82550751 -61235704 - MIR SINE MIR -65 143 16 207 139 0 0 chr12 82550782 82550818 -61235637 + (CA)n Simple_repeat Simple_repeat 2 37 0 283 149 0 0 chr12 82551270 82551317 -61235138 - HSMAR2 DNA Mariner -1255 47 1 387 267 113 13 chr12 82551364 82551517 -61234938 - MIR SINE MIR -65 143 16 228 111 0 0 chr12 82551548 82551584 -61234871 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr12 82551987 82552009 -61234446 + AT_rich Low_complexity Low_complexity 1 22 0 2149 248 44 9 chr12 82552057 82552335 -61234120 + MLT1F LTR MaLR 1 268 -274 3235 163 24 14 chr12 82552335 82552929 -61233526 - LTR26 LTR ERV1 -3 600 1 2149 248 44 9 chr12 82552929 82553174 -61233281 + MLT1F LTR MaLR 268 542 0 183 42 0 0 chr12 82554712 82554736 -61231719 + (CA)n Simple_repeat Simple_repeat 1 24 0 365 206 238 38 chr12 82554992 82555152 -61231303 + MIR SINE MIR 60 251 -11 2118 126 3 0 chr12 82555298 82555592 -61230863 - AluSx SINE Alu -17 295 1 2275 98 3 3 chr12 82556302 82556607 -61229848 - AluSc SINE Alu -4 305 1 2446 78 0 0 chr12 82556981 82557288 -61229167 - AluY SINE Alu -4 307 1 252 0 0 0 chr12 82557364 82557392 -61229063 + (T)n Simple_repeat Simple_repeat 1 28 0 32 98 0 0 chr12 82558004 82558106 -61228349 + AT_rich Low_complexity Low_complexity 1 102 0 787 319 184 11 chr12 82558778 82559519 -61226936 - L2 LINE L2 0 3313 2447 796 128 45 0 chr12 82559775 82559908 -61226547 + L1PA11 LINE L1 6031 6169 -5 344 275 69 30 chr12 82560015 82560146 -61226309 - L1M LINE L1 -2403 5405 5270 6979 184 28 22 chr12 82560381 82562111 -61224344 + L1M2 LINE L1 1340 3078 -3770 1037 204 107 3 chr12 82562132 82562440 -61224015 + L1M2 LINE L1 3854 4193 -2655 3911 147 49 0 chr12 82562440 82563128 -61223327 + L1MA4 LINE L1 5573 6294 -6 1708 145 0 57 chr12 82563435 82563752 -61222703 + AluJb SINE Alu 3 301 -11 192 286 18 0 chr12 82564269 82564325 -61222130 - L2 LINE L2 -6 3307 3251 254 261 14 0 chr12 82566541 82566610 -61219845 + MER116 DNA Mariner 9 78 -2 21 36 0 0 chr12 82567081 82567109 -61219346 + AT_rich Low_complexity Low_complexity 1 28 0 2211 111 30 25 chr12 82567117 82567479 -61218976 - THE1B LTR MaLR 0 364 1 249 333 11 0 chr12 82567934 82568027 -61218428 - MIR SINE MIR -31 231 138 450 304 79 32 chr12 82568642 82568922 -61217533 - L1 LINE L1 -1519 4627 4335 191 231 26 0 chr12 82569023 82569062 -61217393 + L2 LINE L2 3213 3252 -20 22 70 0 0 chr12 82569572 82569615 -61216840 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr12 82569739 82569761 -61216694 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2024 143 3 0 chr12 82569781 82570082 -61216373 + AluSx SINE Alu 1 302 -10 592 241 0 0 chr12 82570085 82570193 -61216262 - FLAM_A SINE Alu -34 108 1 729 327 16 12 chr12 82570526 82570783 -61215672 - MIR SINE MIR 0 262 5 6207 56 7 15 chr12 82570877 82571018 -61215437 + L1PA7 LINE L1 5351 5492 -662 2002 121 3 3 chr12 82571018 82571316 -61215139 + AluY SINE Alu 1 298 -13 6207 56 7 15 chr12 82571316 82571984 -61214471 + L1PA7 LINE L1 5492 6154 0 756 273 78 0 chr12 82572331 82572536 -61213919 - MIR SINE MIR -19 243 23 21 0 0 0 chr12 82574016 82574037 -61212418 + AT_rich Low_complexity Low_complexity 1 21 0 319 254 119 24 chr12 82574074 82574200 -61212255 - L2 LINE L2 -1 3312 3175 514 281 23 47 chr12 82574227 82574398 -61212057 + L2 LINE L2 3110 3276 -37 195 42 0 0 chr12 82575071 82575095 -61211360 + (GA)n Simple_repeat Simple_repeat 2 25 0 814 217 24 17 chr12 82575196 82575427 -61211028 - L1MA9 LINE L1 -125 6064 5830 553 179 71 7 chr12 82575439 82575579 -61210876 + L1MA9 LINE L1 6050 6198 -114 758 207 30 24 chr12 82575610 82575986 -61210469 - LTR56 LTR ERV1 0 445 1 1148 249 27 67 chr12 82576058 82576463 -61209992 - LTR56-int LTR ERV1 -91 5032 4644 22 35 0 0 chr12 82577099 82577128 -61209327 + AT_rich Low_complexity Low_complexity 1 29 0 264 322 57 57 chr12 82577212 82577510 -61208945 - LTR49-int LTR ERV1 -2096 2551 2254 1009 193 0 37 chr12 82577575 82577818 -61208637 - LTR49-int LTR ERV1 -3724 4396 4163 427 246 36 74 chr12 82577888 82578174 -61208281 - LTR49-int LTR ERV1 -1954 2926 1566 * 826 225 55 51 chr12 82578142 82578480 -61207975 - LTR49-int LTR ERV1 -2959 3129 2794 944 223 36 22 chr12 82578480 82578754 -61207701 - LTR57-int LTR ERVL -3832 1511 1234 826 225 55 51 chr12 82578754 82578905 -61207550 - LTR49-int LTR ERV1 -3294 2794 1150 1599 248 61 54 chr12 82578932 82579489 -61206966 - LTR49-int LTR ERV1 -4240 2091 1531 225 0 0 0 chr12 82580349 82580374 -61206081 + (A)n Simple_repeat Simple_repeat 1 25 0 274 143 0 0 chr12 82580374 82580423 -61206032 - LTR49-int LTR ERV1 -4726 1605 1557 232 132 0 0 chr12 82580859 82580897 -61205558 - L1MA9 LINE L1 -39 6273 6236 392 130 87 0 chr12 82581565 82581634 -61204821 + L1MA9 LINE L1 6200 6274 -38 332 151 0 139 chr12 82581739 82581825 -61204630 + MER116 DNA Mariner 2 75 -5 215 284 0 11 chr12 82581826 82581921 -61204534 + (CATATA)n Simple_repeat Simple_repeat 4 97 0 280 216 27 27 chr12 82581968 82582042 -61204413 + L1ME LINE L1 5726 5799 -363 295 257 0 54 chr12 82583997 82584071 -61202384 - L2 LINE L2 0 3313 3244 258 320 133 0 chr12 82586888 82587016 -61199439 + MIR SINE MIR 102 246 -16 * 409 291 68 14 chr12 82587014 82587162 -61199293 - MIR SINE MIR -105 157 2 182 384 0 0 chr12 82587680 82587753 -61198702 + L3 LINE CR1 322 394 -1183 361 214 143 0 chr12 82587842 82587954 -61198501 + MER103 DNA DNA 8 135 -31 349 302 57 0 chr12 82588047 82588153 -61198302 + L2 LINE L2 3161 3272 0 270 326 15 0 chr12 82588569 82588704 -61197751 + (TA)n Simple_repeat Simple_repeat 1 137 0 44078 36 3 1 chr12 82588788 82594935 -61191520 + L1PA3 LINE L1 1 6155 0 222 262 16 0 chr12 82595417 82595478 -61190977 + (TA)n Simple_repeat Simple_repeat 1 62 0 3030 223 80 39 chr12 82595481 82597030 -61189425 - L1ME1 LINE L1 -76 6090 4463 387 0 0 0 chr12 82597030 82597073 -61189382 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3030 223 80 39 chr12 82597073 82597310 -61189145 - L1ME1 LINE L1 -1703 4463 4237 2261 113 3 0 chr12 82598322 82598632 -61187823 - AluSp SINE Alu -2 311 1 201 211 0 0 chr12 82598668 82598725 -61187730 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 200 271 0 0 chr12 82598735 82598783 -61187672 + MIR SINE MIR 215 262 0 23 0 0 0 chr12 82598983 82599006 -61187449 + AT_rich Low_complexity Low_complexity 1 23 0 478 202 101 0 chr12 82599725 82599844 -61186611 - FLAM_A SINE Alu -2 131 1 291 241 179 48 chr12 82600448 82600593 -61185862 - MIR SINE MIR -16 246 83 244 255 0 0 chr12 82601138 82601189 -61185266 + L2 LINE L2 3263 3313 0 1141 146 5 0 chr12 82601931 82602123 -61184332 + L1PB1 LINE L1 3 195 -6668 * 9957 105 51 32 chr12 82602108 82604717 -61181738 + L1PB1 LINE L1 620 3416 -3446 9199 193 35 13 chr12 82604709 82607343 -61179112 + L1PB1 LINE L1 3804 6502 -365 * 213 39 0 0 chr12 82607343 82607369 -61179086 + (TG)n Simple_repeat Simple_repeat 2 27 0 228 53 0 105 chr12 82607372 82607410 -61179045 - L1P5 LINE L1 -337 5814 5781 * 1272 93 119 0 chr12 82607427 82607620 -61178835 + L1PB1 LINE L1 6651 6866 -1 1661 175 14 24 chr12 82609193 82609490 -61176965 - AluJb SINE Alu -16 296 3 504 330 134 23 chr12 82609548 82609899 -61176556 - L2 LINE L2 0 3313 2924 1279 211 64 53 chr12 82610012 82610405 -61176050 - MLT2C1 LTR ERVL 0 397 1 1432 80 0 15 chr12 82610878 82611079 -61175376 - L1PA8 LINE L1 0 6172 5975 814 40 8 65 chr12 82611368 82611492 -61174963 - L1PA8 LINE L1 0 6172 6056 408 74 0 0 chr12 82611494 82611548 -61174907 + L1PA8 LINE L1 6005 6058 -114 654 156 31 39 chr12 82612197 82612325 -61174130 + MER45A DNA AcHobo 51 177 -1 549 261 111 26 chr12 82612328 82612528 -61173927 + MIR SINE MIR 41 254 -8 24 32 0 0 chr12 82612900 82612931 -61173524 + AT_rich Low_complexity Low_complexity 1 31 0 420 326 146 34 chr12 82614112 82614723 -61171732 - L2 LINE L2 -785 2529 1851 309 240 30 20 chr12 82616476 82616576 -61169879 - L1ME2 LINE L1 -13 6151 6051 5325 154 12 37 chr12 82616659 82618446 -61168009 - L1MA8 LINE L1 -3 6288 4539 2518 197 85 17 chr12 82618461 82619185 -61167270 - L1ME2 LINE L1 -213 5951 5192 363 224 163 0 chr12 82619202 82619300 -61167155 - AluJo SINE Alu -3 299 186 802 181 0 0 chr12 82619300 82619433 -61167022 - AluJo SINE Alu -169 133 1 957 247 112 21 chr12 82619435 82619908 -61166547 - L1ME2 LINE L1 -945 5201 4686 399 113 0 0 chr12 82620271 82620333 -61166122 + (CA)n Simple_repeat Simple_repeat 2 63 0 1610 140 0 4 chr12 82620964 82621200 -61165255 - AluSx SINE Alu -73 239 5 300 154 0 0 chr12 82621207 82621259 -61165196 + T-rich Low_complexity Low_complexity 1 52 0 395 211 75 45 chr12 82621456 82621589 -61164866 - MIR SINE MIR -109 153 17 362 289 20 0 chr12 82622739 82622891 -61163564 - Charlie2 DNA MER1_type -121 2741 2587 380 179 141 64 chr12 82623856 82624041 -61162414 - MLT1H LTR MaLR 0 549 356 262 374 99 14 chr12 82624327 82624538 -61161917 - L2 LINE L2 -509 2805 2577 214 368 157 0 chr12 82624648 82624814 -61161641 - L2 LINE L2 -898 2416 2225 412 293 44 0 chr12 82626195 82626400 -61160055 - Charlie2 DNA MER1_type -121 2741 2528 21 0 0 0 chr12 82626428 82626449 -61160006 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 82626744 82626765 -61159690 + AT_rich Low_complexity Low_complexity 1 21 0 383 357 34 67 chr12 82626853 82627091 -61159364 + L2 LINE L2 3034 3263 -9 21 0 0 0 chr12 82628398 82628419 -61158036 + AT_rich Low_complexity Low_complexity 1 21 0 183 363 128 0 chr12 82628672 82628774 -61157681 - MER5A DNA MER1_type -22 167 53 278 290 76 48 chr12 82629128 82629273 -61157182 + MIR SINE MIR 2 150 -112 21 36 0 0 chr12 82629304 82629332 -61157123 + AT_rich Low_complexity Low_complexity 1 28 0 191 36 36 0 chr12 82629515 82629543 -61156912 + (TA)n Simple_repeat Simple_repeat 1 29 0 393 86 0 0 chr12 82630064 82630122 -61156333 + (TA)n Simple_repeat Simple_repeat 2 59 0 332 214 86 0 chr12 82630549 82630619 -61155836 - MIR SINE MIR -138 124 49 675 262 12 19 chr12 82631328 82631584 -61154871 - AluSx SINE Alu -30 282 29 290 357 0 7 chr12 82631652 82631792 -61154663 + C-rich Low_complexity Low_complexity 1 139 0 * 332 299 9 9 chr12 82631699 82631806 -61154649 + CT-rich Low_complexity Low_complexity 1 107 0 2535 65 0 0 chr12 82631833 82632139 -61154316 + AluY SINE Alu 1 306 -5 237 167 62 0 chr12 82632304 82632352 -61154103 - U5 snRNA snRNA -65 51 1 24 32 0 0 chr12 82633073 82633104 -61153351 + AT_rich Low_complexity Low_complexity 1 31 0 206 241 0 0 chr12 82633514 82633568 -61152887 + T-rich Low_complexity Low_complexity 1 54 0 1562 194 75 75 chr12 82633904 82634395 -61152060 - MER67D LTR ERV1 -23 491 1 757 206 147 50 chr12 82634502 82634655 -61151800 - MLT1E LTR MaLR -2 591 409 3707 95 55 17 chr12 82634655 82635242 -61151213 + MER4B LTR ERV1 2 610 0 757 206 147 50 chr12 82635242 82635306 -61151149 - MLT1E LTR MaLR -184 409 353 582 282 37 57 chr12 82635311 82635556 -61150899 - MLT1E LTR MaLR -353 240 1 356 214 0 19 chr12 82635739 82635842 -61150613 + C-rich Low_complexity Low_complexity 2 102 0 23 0 0 0 chr12 82635964 82635987 -61150468 + AT_rich Low_complexity Low_complexity 1 23 0 186 304 65 91 chr12 82637109 82637372 -61149083 - L2 LINE L2 -213 3059 2804 587 345 25 13 chr12 82637441 82637679 -61148776 + MIR SINE MIR 11 251 -11 2325 94 15 87 chr12 82640846 82641250 -61145205 - THE1C LTR MaLR 0 375 1 510 340 0 0 chr12 82641494 82641644 -61144811 + MIR SINE MIR 1 150 -112 476 258 8 0 chr12 82641933 82642053 -61144402 + MIR3 SINE MIR 83 203 -5 959 104 96 138 chr12 82642924 82643031 -61143424 + MER30 DNA MER1_type 1 111 -119 2411 88 0 3 chr12 82643031 82643339 -61143116 + AluSq SINE Alu 3 309 -4 959 104 96 138 chr12 82643339 82643471 -61142984 + MER30 DNA MER1_type 111 230 0 2373 93 7 0 chr12 82644576 82644876 -61141579 + AluSq SINE Alu 1 302 -11 378 294 20 7 chr12 82645017 82645163 -61141292 - MIR SINE MIR -52 210 63 1600 184 42 21 chr12 82645188 82645524 -61140931 - MER2 DNA MER2_type -1 343 1 863 326 57 6 chr12 82645930 82646261 -61140194 + LTR16B LTR ERVL 3 350 -114 6756 64 3 10 chr12 82646808 82647716 -61138739 - L1PA8 LINE L1 -6 6166 5265 12792 148 31 45 chr12 82648060 82650512 -61135943 + Tigger1 DNA MER2_type 1 2417 -1 268 290 131 21 chr12 82650671 82650816 -61135639 - MIR SINE MIR -66 196 36 25 90 0 0 chr12 82650884 82650951 -61135504 + AT_rich Low_complexity Low_complexity 1 67 0 225 0 0 0 chr12 82651027 82651052 -61135403 + (T)n Simple_repeat Simple_repeat 1 25 0 2168 103 7 0 chr12 82651063 82651353 -61135102 + AluSg SINE Alu 1 292 -18 1775 158 24 10 chr12 82651391 82651712 -61134743 + AluSx SINE Alu 3 312 0 22 80 0 0 chr12 82651857 82651907 -61134548 + AT_rich Low_complexity Low_complexity 1 50 0 512 265 44 0 chr12 82651984 82652120 -61134335 + MIR SINE MIR 72 213 -49 30 45 0 0 chr12 82652120 82652164 -61134291 + AT_rich Low_complexity Low_complexity 1 44 0 338 369 117 0 chr12 82653075 82653289 -61133166 - MIR SINE MIR -20 242 4 215 222 0 0 chr12 82653306 82653351 -61133104 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 260 270 98 55 chr12 82654585 82654748 -61131707 + MIR SINE MIR 87 256 -6 194 209 0 0 chr12 82655466 82655509 -61130946 + L2 LINE L2 3271 3313 0 2271 87 13 17 chr12 82656170 82656469 -61129986 - AluY SINE Alu -13 298 1 30712 113 9 64 chr12 82656598 82663131 -61123324 - L1PA7 LINE L1 -7 6462 2 229 35 0 0 chr12 82663656 82663685 -61122770 + (TTTG)n Simple_repeat Simple_repeat 2 164 0 2318 53 0 0 chr12 82663685 82663968 -61122487 - AluY SINE Alu -1 311 1 320 288 0 0 chr12 82665078 82665144 -61121311 + L2 LINE L2 3246 3311 -2 598 169 51 4 chr12 82665302 82665433 -61121022 - L1MB5 LINE L1 -11 6169 6030 1874 122 9 61 chr12 82665895 82666222 -61120233 - AluSx SINE Alu 0 312 3 1989 142 14 0 chr12 82666337 82666619 -61119836 - AluSx SINE Alu -26 286 1 737 280 5 5 chr12 82667454 82667640 -61118815 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr12 82669373 82669395 -61117060 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr12 82671992 82672017 -61114438 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr12 82673586 82673607 -61112848 + (TG)n Simple_repeat Simple_repeat 1 21 0 1251 196 92 40 chr12 82673741 82674088 -61112367 - MLT1A1 LTR MaLR 0 365 1 309 155 0 0 chr12 82674552 82674610 -61111845 + (CA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr12 82676185 82676207 -61110248 + AT_rich Low_complexity Low_complexity 1 22 0 2982 269 85 66 chr12 82676425 82677581 -61108874 + L1ME1 LINE L1 37 1170 -5226 2008 101 3 62 chr12 82677581 82677889 -61108566 - AluSx SINE Alu -22 290 1 2982 269 85 66 chr12 82677889 82678107 -61108348 + L1ME1 LINE L1 1170 1382 -5014 1922 139 4 0 chr12 82678107 82678423 -61108032 + AluSx SINE Alu 1 317 0 2982 269 85 66 chr12 82678423 82679043 -61107412 + L1ME1 LINE L1 1382 2070 -4326 227 217 58 43 chr12 82679056 82679125 -61107330 + L1ME1 LINE L1 2326 2395 -4001 425 228 20 20 chr12 82679139 82679240 -61107215 - LTR40a LTR ERVL -418 101 1 2490 228 60 36 chr12 82679240 82679733 -61106722 + L1ME1 LINE L1 5267 5790 -445 1599 142 67 0 chr12 82679733 82679987 -61106468 + AluSx SINE Alu 12 282 -30 2490 228 60 36 chr12 82679987 82680353 -61106102 + L1ME1 LINE L1 5790 6146 -89 2077 113 0 44 chr12 82680437 82680757 -61105698 + AluSx SINE Alu 3 308 -4 21 71 0 0 chr12 82680910 82680952 -61105503 + AT_rich Low_complexity Low_complexity 1 42 0 721 307 62 17 chr12 82681191 82681432 -61105023 - MIR SINE MIR -6 256 5 1463 253 37 16 chr12 82681521 82681917 -61104538 + MSTD LTR MaLR 5 396 0 285 386 26 11 chr12 82683813 82684002 -61102453 + MIR SINE MIR 65 256 -6 678 35 0 0 chr12 82684647 82684732 -61101723 + (GA)n Simple_repeat Simple_repeat 2 86 0 1998 123 15 9 chr12 82685992 82686318 -61100137 - L1MA3 LINE L1 -9 6296 5969 195 376 104 16 chr12 82686689 82686814 -61099641 + L2 LINE L2 3137 3272 0 3746 127 28 114 chr12 82686898 82687756 -61098699 - LTR1 LTR ERV1 -1 784 1 21 0 0 0 chr12 82687842 82687863 -61098592 + AT_rich Low_complexity Low_complexity 1 21 0 817 214 43 33 chr12 82688430 82688640 -61097815 - MLT1J LTR MaLR 0 511 300 421 270 0 0 chr12 82688719 82688808 -61097647 - MLT1J LTR MaLR -361 150 62 202 331 141 7 chr12 82689991 82690133 -61096322 - MIR SINE MIR -71 191 31 22 0 0 0 chr12 82690498 82690520 -61095935 + AT_rich Low_complexity Low_complexity 1 22 0 715 289 27 8 chr12 82690906 82691162 -61095293 - MIR SINE MIR 0 262 2 206 287 5 65 chr12 82692319 82692412 -61094043 + MIR SINE MIR 95 144 -64 328 276 16 71 chr12 82692517 82692644 -61093811 - MER20 DNA MER1_type 0 219 100 486 325 26 16 chr12 82692955 82693149 -61093306 + MIR SINE MIR 65 260 -2 2091 128 0 10 chr12 82693288 82693593 -61092862 + AluSx SINE Alu 7 308 -4 214 331 128 8 chr12 82693732 82693865 -61092590 - L2 LINE L2 -469 2845 2697 224 216 34 45 chr12 82694248 82694336 -61092119 - MIR3 SINE MIR -117 91 5 445 235 0 0 chr12 82694929 82695014 -61091441 - MLT1J2 LTR MaLR 0 450 366 947 248 18 18 chr12 82695036 82695254 -61091201 + MER58A DNA MER1_type 2 219 -5 705 272 102 5 chr12 82695303 82695509 -61090946 - MLT1J2 LTR MaLR -213 237 12 264 30 0 0 chr12 82696892 82696925 -61089530 + (TG)n Simple_repeat Simple_repeat 2 34 0 1541 177 29 91 chr12 82697562 82697947 -61088508 - MLT1A1 LTR MaLR -4 361 1 180 152 0 0 chr12 82698608 82698641 -61087814 + (TA)n Simple_repeat Simple_repeat 1 33 0 2204 106 3 0 chr12 82699146 82699447 -61087008 - AluSp SINE Alu -11 302 1 318 296 37 0 chr12 82699933 82700041 -61086414 - MER81 DNA DNA 0 114 3 21 36 0 0 chr12 82700141 82700169 -61086286 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 82702609 82702633 -61083822 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 82702752 82702774 -61083681 + AT_rich Low_complexity Low_complexity 1 22 0 1965 159 34 8 chr12 82702885 82703236 -61083219 + MER46B DNA MER2_type 1 235 -1 21 0 0 0 chr12 82705162 82705183 -61081272 + AT_rich Low_complexity Low_complexity 1 21 0 374 306 118 29 chr12 82705292 82705462 -61080993 - MIR SINE MIR 0 262 78 1952 134 0 14 chr12 82705714 82706038 -61080417 + AluSx SINE Alu 3 322 0 290 270 48 24 chr12 82706104 82706230 -61080225 - L1ME3A LINE L1 0 6170 6042 1185 241 54 52 chr12 82706271 82706966 -61079489 - L1ME3A LINE L1 -349 5821 5127 243 271 0 0 chr12 82707266 82707325 -61079130 - L3 LINE CR1 -200 1377 1319 419 336 63 65 chr12 82707542 82707893 -61078562 - L3 LINE CR1 -383 1194 845 233 293 0 50 chr12 82707916 82708015 -61078440 + L1ME LINE L1 5811 5904 -217 366 61 0 0 chr12 82708031 82708080 -61078375 + (TG)n Simple_repeat Simple_repeat 2 50 0 2415 52 0 32 chr12 82708295 82708605 -61077850 + AluY SINE Alu 1 300 -11 388 392 61 13 chr12 82708645 82708956 -61077499 - L3 LINE CR1 -989 588 263 1229 249 97 40 chr12 82708980 82709433 -61077022 + MLT1H LTR MaLR 71 549 0 28 29 0 0 chr12 82710006 82710041 -61076414 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr12 82710077 82710128 -61076327 + AT_rich Low_complexity Low_complexity 1 51 0 519 320 105 14 chr12 82710573 82710792 -61075663 + MIR SINE MIR 23 261 -1 22 35 0 0 chr12 82710997 82711026 -61075429 + AT_rich Low_complexity Low_complexity 1 29 0 895 37 0 0 chr12 82712981 82713089 -61073366 + L1PA2 LINE L1 6046 6153 -2 198 0 0 0 chr12 82713218 82713240 -61073215 + (A)n Simple_repeat Simple_repeat 1 22 0 371 212 35 26 chr12 82713465 82713578 -61072877 + L1MC4 LINE L1 5809 5922 -1886 376 208 39 15 chr12 82713750 82713880 -61072575 + (TA)n Simple_repeat Simple_repeat 2 134 0 21 36 0 0 chr12 82713910 82713938 -61072517 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 82714073 82714095 -61072360 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr12 82716939 82716969 -61069486 + AT_rich Low_complexity Low_complexity 1 30 0 277 333 20 53 chr12 82718203 82718214 -61068241 + L2 LINE L2 3169 3179 -134 201 94 0 0 chr12 82718214 82718246 -61068209 + (TTG)n Simple_repeat Simple_repeat 2 33 0 277 333 20 53 chr12 82718246 82718384 -61068071 + L2 LINE L2 3179 3313 0 237 254 0 14 chr12 82719203 82719274 -61067181 + L1MC4 LINE L1 6614 6683 -1359 2149 94 43 62 chr12 82720533 82720858 -61065597 + THE1B LTR MaLR 1 331 -33 246 32 0 0 chr12 82720858 82720889 -61065566 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2299 63 0 3 chr12 82720891 82721178 -61065277 - AluY SINE Alu -25 286 1 2149 94 43 62 chr12 82721178 82721220 -61065235 + THE1B LTR MaLR 332 364 0 210 37 0 0 chr12 82721679 82721706 -61064749 + (CAA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr12 82721755 82721786 -61064669 + AT_rich Low_complexity Low_complexity 1 31 0 228 111 0 0 chr12 82721788 82721824 -61064631 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2094 122 0 0 chr12 82721944 82722240 -61064215 + AluSx SINE Alu 13 308 -4 1678 129 0 8 chr12 82722246 82722486 -61063969 + AluSx SINE Alu 1 238 -74 315 0 0 0 chr12 82722493 82722528 -61063927 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 199 353 129 7 chr12 82722596 82722735 -61063720 + MIR3 SINE MIR 19 174 -34 345 367 76 38 chr12 82722965 82723360 -61063095 + L2 LINE L2 2904 3313 0 2180 116 0 0 chr12 82723543 82723844 -61062611 + AluSc SINE Alu 1 301 -8 6862 63 2 1 chr12 82724752 82725631 -61060824 - L1PA7 LINE L1 -6 6148 5269 1946 147 13 43 chr12 82726352 82726727 -61059728 + THE1B LTR MaLR 1 364 0 335 291 0 19 chr12 82727122 82727225 -61059230 + L1MC4 LINE L1 6603 6703 -1339 302 279 97 75 chr12 82728415 82728641 -61057814 - MIR SINE MIR 0 262 32 309 250 152 24 chr12 82729019 82729183 -61057272 + MIR SINE MIR 65 249 -13 351 226 11 32 chr12 82729518 82729545 -61056910 + L1MC4 LINE L1 6612 6638 -1404 1901 127 21 11 chr12 82729545 82729828 -61056627 + AluSx SINE Alu 1 286 -26 351 226 11 32 chr12 82729828 82729893 -61056562 + L1MC4 LINE L1 6638 6702 -1340 2864 241 17 6 chr12 82729910 82730544 -61055911 + MER82 DNA MER2_type 11 651 -2 303 93 0 0 chr12 82731568 82731611 -61054844 + (TA)n Simple_repeat Simple_repeat 2 44 0 1632 153 111 13 chr12 82731708 82732015 -61054440 + MER1B DNA MER1_type 1 337 0 1533 184 43 13 chr12 82732049 82732348 -61054107 - AluJb SINE Alu -4 308 1 31 26 0 0 chr12 82732953 82732991 -61053464 + AT_rich Low_complexity Low_complexity 1 38 0 986 304 124 8 chr12 82733039 82733417 -61053038 + L2 LINE L2 2892 3313 0 23 78 0 0 chr12 82733870 82733921 -61052534 + AT_rich Low_complexity Low_complexity 1 51 0 29 47 0 0 chr12 82735111 82735154 -61051301 + AT_rich Low_complexity Low_complexity 1 43 0 252 330 9 0 chr12 82735264 82735379 -61051076 - HAL1 LINE L1 -846 1661 1546 318 183 14 0 chr12 82735452 82735523 -61050932 + L1MC3 LINE L1 7034 7105 -680 233 219 9 86 chr12 82735524 82735629 -61050826 + MLT1F1 LTR MaLR 45 141 -426 2427 190 53 25 chr12 82735635 82736052 -61050403 + L1MC3 LINE L1 7187 7626 -159 2076 128 3 10 chr12 82736052 82736364 -61050091 - AluSx SINE Alu -2 310 1 2427 190 53 25 chr12 82736364 82736514 -61049941 + L1MC3 LINE L1 7626 7770 -15 1917 122 6 55 chr12 82737221 82737550 -61048905 + AluSq SINE Alu 1 313 0 250 337 20 20 chr12 82737598 82737699 -61048756 - L3 LINE CR1 -139 1438 1338 1595 217 20 15 chr12 82738429 82738770 -61047685 + MER7A DNA MER2_type 1 341 -5 415 206 191 44 chr12 82738784 82738920 -61047535 - FAM SINE Alu 0 49 1 180 115 0 0 chr12 82738997 82739023 -61047432 - MER5A DNA MER1_type -1 188 163 5689 209 18 20 chr12 82739333 82741438 -61045017 + L1PA16 LINE L1 4055 6156 -10 200 195 0 0 chr12 82741484 82741525 -61044930 + GA-rich Low_complexity Low_complexity 1 41 0 216 186 0 0 chr12 82742042 82742101 -61044354 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 2590 185 30 26 chr12 82742121 82742652 -61043803 - MLT2B3 LTR ERVL -21 533 1 201 370 83 0 chr12 82743087 82743195 -61043260 - MIR3 SINE MIR -11 197 81 199 214 0 89 chr12 82743256 82743312 -61043143 + MIR SINE MIR 206 256 -6 22 0 0 0 chr12 82743734 82743756 -61042699 + AT_rich Low_complexity Low_complexity 1 22 0 321 353 26 32 chr12 82745323 82745479 -61040976 + L2 LINE L2 3158 3312 -1 23 0 0 0 chr12 82745574 82745597 -61040858 + AT_rich Low_complexity Low_complexity 1 23 0 1413 180 70 15 chr12 82746053 82746325 -61040130 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr12 82746331 82746352 -61040103 + AT_rich Low_complexity Low_complexity 1 21 0 1749 200 110 10 chr12 82746894 82747284 -61039171 + MLT2B1 LTR ERVL 1 429 -91 1105 163 4 98 chr12 82748008 82748254 -61038201 - AluJb SINE Alu -84 228 6 27 0 0 0 chr12 82748989 82749016 -61037439 + AT_rich Low_complexity Low_complexity 1 27 0 29 78 0 0 chr12 82749055 82749119 -61037336 + AT_rich Low_complexity Low_complexity 1 64 0 240 169 31 0 chr12 82749119 82749184 -61037271 + (TATAA)n Simple_repeat Simple_repeat 4 70 0 250 272 114 18 chr12 82749529 82749643 -61036812 - MIR3 SINE MIR -80 128 4 2092 125 0 0 chr12 82750262 82750558 -61035897 - AluY SINE Alu -15 296 1 233 258 65 0 chr12 82750673 82750735 -61035720 + MIR SINE MIR 195 260 -2 650 244 73 124 chr12 82752464 82752779 -61033676 - MER102a DNA MER1_type 0 330 32 351 0 0 0 chr12 82753155 82753194 -61033261 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr12 82753709 82753737 -61032718 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 82753812 82753832 -61032623 + (A)n Simple_repeat Simple_repeat 1 20 0 481 249 121 86 chr12 82754386 82754759 -61031696 - Charlie8 DNA MER1_type -2011 406 21 469 238 191 0 chr12 82754828 82754954 -61031501 + MER5A DNA MER1_type 10 159 -30 188 297 40 27 chr12 82755914 82755988 -61030467 - MIR SINE MIR -106 156 82 222 290 37 37 chr12 82756366 82756473 -61029982 - L2 LINE L2 -2 3311 3205 5650 147 26 12 chr12 82756596 82757558 -61028897 + Tigger1 DNA MER2_type 1444 2418 0 5073 143 21 55 chr12 82757741 82757928 -61028527 - L1PA16 LINE L1 -16 6150 5958 2423 70 0 0 chr12 82757928 82758226 -61028229 - AluY SINE Alu -13 298 1 5073 143 21 55 chr12 82758226 82759276 -61027179 - L1PA16 LINE L1 -208 5958 4967 2092 126 13 0 chr12 82759276 82759578 -61026877 + AluSx SINE Alu 1 306 -6 5073 143 21 55 chr12 82759578 82759612 -61026843 - L1PA16 LINE L1 -1199 4967 4933 21 0 0 0 chr12 82759926 82759947 -61026508 + AT_rich Low_complexity Low_complexity 1 21 0 1116 37 0 0 chr12 82760231 82760367 -61026088 - L1PA4 LINE L1 -2156 3990 3855 11565 28 2 7 chr12 82760367 82762511 -61023944 + L1PA4 LINE L1 4016 6155 0 202 343 59 29 chr12 82763254 82763356 -61023099 - MIR3 SINE MIR -13 195 91 185 132 0 38 chr12 82764066 82764119 -61022336 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 757 268 95 0 chr12 82764432 82764663 -61021792 + MIR SINE MIR 7 259 -3 230 288 45 0 chr12 82765528 82765594 -61020861 - MIR SINE MIR -77 185 117 21 36 0 0 chr12 82765934 82765962 -61020493 + AT_rich Low_complexity Low_complexity 1 28 0 562 290 63 21 chr12 82766758 82766996 -61019459 + MIR SINE MIR 10 257 -5 25 31 0 0 chr12 82767573 82767605 -61018850 + AT_rich Low_complexity Low_complexity 1 32 0 2379 170 17 7 chr12 82767953 82768359 -61018096 - MSTB LTR MaLR -2 424 15 238 346 109 30 chr12 82769745 82769947 -61016508 + MIR SINE MIR 18 235 -27 941 231 62 18 chr12 82769948 82770221 -61016234 + MLT1C LTR MaLR 1 285 -182 229 382 49 8 chr12 82770233 82770356 -61016099 - L3 LINE CR1 -1217 360 233 1860 118 68 0 chr12 82770467 82770746 -61015709 - AluSq SINE Alu -3 310 13 187 286 0 20 chr12 82771084 82771133 -61015322 + MIR SINE MIR 214 261 -1 519 123 25 0 chr12 82771284 82771365 -61015090 - AluSg/x SINE Alu -15 295 213 21 0 0 0 chr12 82772683 82772704 -61013751 + AT_rich Low_complexity Low_complexity 1 21 0 890 284 54 49 chr12 82773645 82774036 -61012419 - L2 LINE L2 0 3313 2921 370 359 130 0 chr12 82774984 82775207 -61011248 - MIR SINE MIR -4 258 7 442 258 119 44 chr12 82775574 82775733 -61010722 + LTR33A LTR ERVL 353 523 0 979 256 75 65 chr12 82776308 82776772 -61009683 - MLT1H LTR MaLR 0 549 81 532 277 71 33 chr12 82777889 82778073 -61008382 + MIR SINE MIR 3 193 -69 426 323 71 0 chr12 82780409 82780564 -61005891 + MIR SINE MIR 53 218 -44 186 43 0 0 chr12 82780862 82780885 -61005570 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 262 283 35 18 chr12 82781613 82781726 -61004729 - L1ME LINE L1 -299 5822 5708 456 277 106 53 chr12 82782617 82782974 -61003481 - MLT1J1 LTR MaLR -8 438 63 283 260 234 26 chr12 82783472 82783626 -61002829 - MIR SINE MIR -64 198 13 189 0 0 0 chr12 82784806 82784827 -61001628 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 339 119 0 0 chr12 82785037 82785104 -61001351 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 787 246 22 0 chr12 82785224 82785407 -61001048 - MER5A DNA MER1_type 0 189 3 558 265 101 0 chr12 82785989 82786178 -61000277 + MIR SINE MIR 17 224 -38 2117 129 0 7 chr12 82786534 82786836 -60999619 + AluSx SINE Alu 7 306 -6 222 37 0 0 chr12 82788218 82788245 -60998210 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1653 129 44 61 chr12 82788248 82788543 -60997912 - AluSq SINE Alu -21 292 3 1273 284 153 38 chr12 82788612 82789888 -60996567 - HAL1 LINE L1 -48 2459 1038 264 186 0 0 chr12 82789895 82789954 -60996501 + (TG)n Simple_repeat Simple_repeat 2 60 0 362 275 67 119 chr12 82789983 82790190 -60996265 - HAL1 LINE L1 -1499 1008 792 2253 67 0 3 chr12 82790190 82790475 -60995980 + AluY SINE Alu 1 284 -27 362 275 67 119 chr12 82790475 82790504 -60995951 - HAL1 LINE L1 -1715 792 763 234 62 0 0 chr12 82790504 82790536 -60995919 + (TG)n Simple_repeat Simple_repeat 1 32 0 362 275 67 119 chr12 82790536 82790854 -60995601 - HAL1 LINE L1 -1744 763 482 335 261 42 61 chr12 82790927 82791092 -60995363 - HAL1 LINE L1 -2186 321 160 282 377 60 4 chr12 82791775 82792027 -60994428 - L2 LINE L2 -588 2726 2461 23 0 0 0 chr12 82793751 82793774 -60992681 + AT_rich Low_complexity Low_complexity 1 23 0 493 205 20 73 chr12 82794218 82794255 -60992200 - MIR SINE MIR -68 194 157 1954 139 137 13 chr12 82794255 82794635 -60991820 - MSTA LTR MaLR -1 427 1 493 205 20 73 chr12 82794635 82794748 -60991707 - MIR SINE MIR -105 157 52 25 0 0 0 chr12 82795556 82795581 -60990874 + AT_rich Low_complexity Low_complexity 1 25 0 523 237 94 81 chr12 82796497 82796709 -60989746 - MIR SINE MIR -54 208 10 306 0 0 0 chr12 82797536 82797570 -60988885 + (TG)n Simple_repeat Simple_repeat 2 35 0 2138 105 3 0 chr12 82800697 82801041 -60985414 + AluSp SINE Alu 1 345 0 344 226 0 0 chr12 82801251 82801324 -60985131 + MIR SINE MIR 72 144 -64 281 331 149 24 chr12 82802697 82802945 -60983510 - L2 LINE L2 -367 2947 2669 302 312 91 72 chr12 82802971 82803432 -60983023 - L2 LINE L2 -816 2498 2029 1988 107 3 40 chr12 82804367 82804666 -60981789 - AluSx SINE Alu -24 288 1 425 122 14 0 chr12 82804697 82804771 -60981684 + (TA)n Simple_repeat Simple_repeat 1 75 0 246 248 38 9 chr12 82804807 82804837 -60981618 + (TA)n Simple_repeat Simple_repeat 1 29 -79 225 94 0 0 chr12 82804837 82804869 -60981586 + (TG)n Simple_repeat Simple_repeat 1 32 0 246 248 38 9 chr12 82804869 82804943 -60981512 + (TA)n Simple_repeat Simple_repeat 29 108 0 325 263 42 51 chr12 82806558 82806676 -60979779 + MIR3 SINE MIR 83 199 -9 22 35 0 0 chr12 82807452 82807481 -60978974 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 82807609 82807635 -60978820 + AT_rich Low_complexity Low_complexity 1 26 0 225 345 11 23 chr12 82807834 82807921 -60978534 - MIR SINE MIR -13 249 164 192 125 0 0 chr12 82808093 82808125 -60978330 + (TCC)n Simple_repeat Simple_repeat 2 33 0 6047 149 54 18 chr12 82808131 82809108 -60977347 - L1MC1 LINE L1 0 6333 5292 7167 52 2 0 chr12 82809108 82810683 -60975772 + L1PA5 LINE L1 4579 6154 0 6047 149 54 18 chr12 82810683 82810891 -60975564 - L1MC1 LINE L1 -1041 5292 5093 1140 232 25 46 chr12 82810905 82811272 -60975183 - L1MC1 LINE L1 -1199 4947 4589 26 0 0 0 chr12 82811665 82811691 -60974764 + AT_rich Low_complexity Low_complexity 1 26 0 993 214 43 17 chr12 82812462 82812696 -60973759 - MLT1D LTR MaLR 0 505 266 213 138 0 108 chr12 82812845 82812910 -60973545 - L2 LINE L2 0 3313 3256 300 335 88 33 chr12 82812985 82813167 -60973288 + MIR SINE MIR 3 194 -68 300 256 74 49 chr12 82813307 82813510 -60972945 - MER112 DNA MER1_type -11 249 42 1889 178 0 0 chr12 82814198 82814501 -60971954 + AluSq SINE Alu 9 311 -2 28 29 0 0 chr12 82814822 82814857 -60971598 + AT_rich Low_complexity Low_complexity 1 35 0 235 0 0 0 chr12 82815328 82815354 -60971101 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2120 96 0 4 chr12 82815354 82815635 -60970820 - AluSx SINE Alu -30 282 3 273 339 85 15 chr12 82815796 82815926 -60970529 + L2 LINE L2 3175 3313 0 1903 119 7 7 chr12 82816266 82816559 -60969896 - AluSx SINE Alu -19 293 1 191 344 94 0 chr12 82816886 82816982 -60969473 + L2 LINE L2 3168 3272 0 403 303 28 45 chr12 82817747 82817925 -60968530 - MER5B DNA MER1_type -2 176 2 233 213 0 66 chr12 82818108 82818169 -60968286 - MIR SINE MIR -15 247 191 234 0 0 0 chr12 82818507 82818533 -60967922 + (A)n Simple_repeat Simple_repeat 1 26 0 182 308 159 9 chr12 82818916 82819023 -60967432 - L2 LINE L2 0 3313 3191 276 200 0 0 chr12 82819028 82819088 -60967367 + (CATA)n Simple_repeat Simple_repeat 1 60 0 232 224 67 18 chr12 82819122 82819287 -60967168 + (TA)n Simple_repeat Simple_repeat 2 174 0 342 173 40 29 chr12 82819301 82819474 -60966981 + (TA)n Simple_repeat Simple_repeat 2 176 0 519 198 53 10 chr12 82819559 82820157 -60966298 + (TA)n Simple_repeat Simple_repeat 1 623 0 231 130 106 6 chr12 82820172 82820333 -60966122 + (TA)n Simple_repeat Simple_repeat 1 177 0 265 277 0 0 chr12 82820521 82820586 -60965869 - MIR SINE MIR -18 244 180 * 1696 267 117 10 chr12 82820584 82821198 -60965257 + L2 LINE L2 1915 2594 -720 666 287 12 29 chr12 82821284 82821528 -60964927 - MER112 DNA MER1_type -1 259 20 361 93 37 0 chr12 82822422 82822476 -60963979 + CT-rich Low_complexity Low_complexity 4 59 0 630 150 0 48 chr12 82822476 82822663 -60963792 + (TCC)n Simple_repeat Simple_repeat 3 180 0 23 0 0 0 chr12 82823376 82823399 -60963056 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 82823838 82823862 -60962593 + AT_rich Low_complexity Low_complexity 1 24 0 1953 128 6 10 chr12 82823926 82824238 -60962217 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr12 82824932 82824954 -60961501 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 82826432 82826468 -60959987 + AT_rich Low_complexity Low_complexity 1 36 0 237 253 0 13 chr12 82826508 82826583 -60959872 + (TA)n Simple_repeat Simple_repeat 2 75 0 351 96 0 0 chr12 82827731 82827783 -60958672 + (TG)n Simple_repeat Simple_repeat 1 52 0 1151 226 19 85 chr12 82827910 82828149 -60958306 - MLT2C1 LTR ERVL 0 397 197 1818 132 49 0 chr12 82828149 82828437 -60958018 + AluSg1 SINE Alu 1 302 -7 1151 226 19 85 chr12 82828437 82828622 -60957833 - MLT2C1 LTR ERVL -200 197 1 23 0 0 0 chr12 82829092 82829115 -60957340 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 82829171 82829193 -60957262 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 82830496 82830527 -60955928 + AT_rich Low_complexity Low_complexity 1 31 0 231 299 0 23 chr12 82830713 82830800 -60955655 + (TG)n Simple_repeat Simple_repeat 2 86 0 31 44 0 0 chr12 82832796 82832841 -60953614 + AT_rich Low_complexity Low_complexity 1 45 0 1687 142 0 59 chr12 82832852 82833177 -60953278 - AluSx SINE Alu 0 312 3 296 350 42 37 chr12 82833243 82833457 -60952998 + MIR SINE MIR 30 244 -18 27 49 0 0 chr12 82833607 82833648 -60952807 + AT_rich Low_complexity Low_complexity 1 41 0 1383 305 85 50 chr12 82833842 82835129 -60951326 - L2 LINE L2 0 3313 1974 314 259 84 137 chr12 82835123 82835246 -60951209 - MIR SINE MIR -3 259 156 * 2409 70 6 16 chr12 82835246 82835558 -60950897 - AluSc SINE Alu 0 309 1 314 259 84 137 chr12 82835558 82835697 -60950758 - MIR SINE MIR -106 156 11 511 255 90 5 chr12 82835702 82835942 -60950513 - L2 LINE L2 -1327 1987 1769 444 37 0 0 chr12 82836273 82836327 -60950128 + (CA)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chr12 82836900 82836924 -60949531 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr12 82837272 82837317 -60949138 + AT_rich Low_complexity Low_complexity 1 45 0 1350 185 7 60 chr12 82837668 82837949 -60948506 + AluJb SINE Alu 3 268 -44 222 37 0 0 chr12 82838272 82838299 -60948156 + (A)n Simple_repeat Simple_repeat 1 27 0 3230 124 25 2 chr12 82838386 82838870 -60947585 - LOR1a LTR ERV1 0 497 3 23 0 0 0 chr12 82840145 82840168 -60946287 + AT_rich Low_complexity Low_complexity 1 23 0 759 228 7 85 chr12 82841163 82841622 -60944833 - MLT1G LTR MaLR -1 589 1 336 321 123 36 chr12 82842014 82842322 -60944133 - L2 LINE L2 -909 2405 2071 355 202 185 17 chr12 82843077 82843196 -60943259 - MIR SINE MIR -21 241 103 2143 117 0 0 chr12 82843390 82843689 -60942766 - AluY SINE Alu -12 299 1 206 255 20 0 chr12 82843802 82843853 -60942602 + L2 LINE L2 3215 3266 -6 30 55 0 27 chr12 82844634 82844652 -60941803 + AT_rich Low_complexity Low_complexity 1 18 -53 2208 105 0 0 chr12 82844652 82844937 -60941518 + AluSx SINE Alu 1 285 -27 30 55 0 27 chr12 82844937 82844991 -60941464 + AT_rich Low_complexity Low_complexity 18 71 0 330 331 34 20 chr12 82845349 82845497 -60940958 + MER117 DNA MER1_type 10 159 -38 221 358 68 37 chr12 82845825 82846015 -60940440 + MIR SINE MIR 1 196 -66 542 260 144 0 chr12 82846699 82846857 -60939598 - MER5A DNA MER1_type 0 189 6 189 94 0 0 chr12 82848026 82848058 -60938397 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 618 226 94 51 chr12 82848553 82848661 -60937794 - L1MC5 LINE L1 -163 7798 7696 2663 167 4 62 chr12 82848661 82849189 -60937266 - LOR1a LTR ERV1 0 497 1 618 226 94 51 chr12 82849189 82849474 -60936981 - L1MC5 LINE L1 -265 7696 7388 2194 109 7 0 chr12 82849594 82849896 -60936559 - AluSg SINE Alu -6 304 1 1940 121 32 0 chr12 82850322 82850602 -60935853 + AluSg SINE Alu 1 289 -21 30 59 0 0 chr12 82853066 82853117 -60933338 + AT_rich Low_complexity Low_complexity 1 51 0 191 36 36 0 chr12 82854476 82854504 -60931951 + (TC)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 82855042 82855070 -60931385 + AT_rich Low_complexity Low_complexity 1 28 0 2043 125 16 0 chr12 82855532 82855835 -60930620 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr12 82858264 82858288 -60928167 + AT_rich Low_complexity Low_complexity 1 24 0 273 197 0 28 chr12 82859706 82859777 -60926678 + L1MC4 LINE L1 6639 6707 -1335 329 266 55 37 chr12 82860190 82860299 -60926156 - MIR SINE MIR -138 124 14 186 231 19 39 chr12 82860450 82860502 -60925953 + MER5B DNA MER1_type 122 172 -6 336 347 17 0 chr12 82860733 82860862 -60925593 + MIR SINE MIR 21 150 -65 414 349 89 89 chr12 82861167 82861514 -60924941 - L2 LINE L2 -81 3191 2845 2110 88 3 39 chr12 82862583 82862890 -60923565 + AluSc SINE Alu 1 296 -13 459 293 8 0 chr12 82863069 82863192 -60923263 - MER31B LTR ERV1 -8 458 335 190 322 51 0 chr12 82863391 82863450 -60923005 - MIR SINE MIR 0 262 201 2447 169 15 6 chr12 82863487 82863960 -60922495 - L1 LINE L1 -927 5288 4812 1775 284 89 9 chr12 82864518 82865067 -60921388 + MLT1E LTR MaLR 1 593 0 443 304 65 7 chr12 82865753 82865891 -60920564 + MIR SINE MIR 8 153 -109 394 312 65 19 chr12 82866238 82866392 -60920063 - L2 LINE L2 -211 3061 2901 255 279 29 0 chr12 82866487 82866555 -60919900 - L2 LINE L2 -818 2496 2427 2149 240 49 38 chr12 82867769 82868344 -60918111 - MLT1G LTR MaLR 0 590 10 2712 248 55 42 chr12 82868831 82871429 -60915026 - L1MEc LINE L1 -1903 4312 1639 2321 246 41 2 chr12 82871452 82872083 -60914372 - L1ME1 LINE L1 -5 6161 5506 211 200 0 0 chr12 82872669 82872709 -60913746 + (TG)n Simple_repeat Simple_repeat 1 40 0 1843 146 56 3 chr12 82873552 82873839 -60912616 + AluSx SINE Alu 1 302 -10 2216 95 7 3 chr12 82875005 82875310 -60911145 + AluSc SINE Alu 1 306 -3 1160 237 12 4 chr12 82875441 82875686 -60910769 + Tigger7 DNA MER2_type 2 248 -2239 * 1841 127 58 55 chr12 82875671 82876033 -60910422 + Tigger7 DNA MER2_type 2222 2584 -3 1086 97 0 0 chr12 82876225 82876369 -60910086 - AluSp SINE Alu -129 184 41 343 403 16 43 chr12 82877003 82877189 -60909266 + MER91A DNA MER1_type 3 183 -13 2089 128 3 3 chr12 82877694 82877998 -60908457 - AluSp SINE Alu -9 304 1 1843 146 56 3 chr12 82878846 82879133 -60907322 + AluSx SINE Alu 1 302 -10 2461 45 6 10 chr12 82880299 82880611 -60905844 + AluY SINE Alu 1 311 0 10053 39 8 1 chr12 82880778 82882792 -60903663 - L1PA5 LINE L1 0 6154 4123 2996 36 0 0 chr12 82882792 82883149 -60903306 + L1PA5 LINE L1 3778 4134 -2012 227 281 174 0 chr12 82883308 82883429 -60903026 - MIR SINE MIR -79 183 42 263 274 0 32 chr12 82883484 82883546 -60902909 + L2 LINE L2 3201 3260 -12 27 73 0 0 chr12 82884591 82884646 -60901809 + AT_rich Low_complexity Low_complexity 1 55 0 230 309 118 22 chr12 82887479 82887615 -60898840 + MIR SINE MIR 12 160 -102 209 321 107 0 chr12 82890471 82890583 -60895872 + MIR SINE MIR 103 226 -36 7515 206 70 14 chr12 82890814 82892362 -60894093 - L1MB1 LINE L1 0 5992 4532 2113 120 10 0 chr12 82892362 82892654 -60893801 - AluSp SINE Alu -16 297 3 7515 206 70 14 chr12 82892654 82893912 -60892543 - L1MB1 LINE L1 -1460 4532 3043 533 264 73 6 chr12 82893903 82894081 -60892374 - L1MB1 LINE L1 -5045 856 667 * 860 294 166 24 chr12 82894218 82894595 -60891860 - L1MB1 LINE L1 -5232 659 2 213 391 0 0 chr12 82897164 82897233 -60889222 - L2 LINE L2 -34 3238 3170 225 0 0 0 chr12 82897455 82897480 -60888975 + (T)n Simple_repeat Simple_repeat 1 25 0 229 293 138 8 chr12 82897723 82897846 -60888609 + MIR SINE MIR 124 262 0 1630 217 59 27 chr12 82899375 82899864 -60886591 - MLT1D LTR MaLR 0 505 1 226 317 78 11 chr12 82899885 82900065 -60886390 - L1ME LINE L1 -196 5925 5734 180 407 34 8 chr12 82900067 82900185 -60886270 - L2 LINE L2 -15 3257 3137 210 342 72 9 chr12 82900302 82900413 -60886042 - L2 LINE L2 -212 3060 2943 454 360 67 33 chr12 82900462 82900851 -60885604 - L2 LINE L2 -356 2958 2557 204 282 72 44 chr12 82900861 82901042 -60885413 - L2 LINE L2 -898 2416 2231 208 204 0 0 chr12 82901255 82901304 -60885151 - L2 LINE L2 -300 2972 2924 614 247 111 0 chr12 82901370 82901532 -60884923 - MIR SINE MIR -43 219 40 452 159 0 0 chr12 82902439 82902508 -60883947 - MER8 DNA MER2_type -1 238 170 * 2496 133 57 14 chr12 82902505 82902926 -60883529 + Tigger2 DNA MER2_type 2280 2718 0 217 329 13 13 chr12 82902986 82903065 -60883390 - L2 LINE L2 -1390 1924 1846 1719 279 121 89 chr12 82903094 82905491 -60880964 + HAL1 LINE L1 10 2483 -24 31 0 0 0 chr12 82905499 82905530 -60880925 + AT_rich Low_complexity Low_complexity 1 31 0 208 143 0 61 chr12 82905726 82905775 -60880680 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 538 360 40 8 chr12 82906244 82906497 -60879958 - MIR SINE MIR 0 262 2 218 315 153 79 chr12 82906551 82907491 -60878964 - L2 LINE L2 -353 2961 1952 189 0 0 0 chr12 82907536 82907557 -60878898 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr12 82908344 82908367 -60878088 + AT_rich Low_complexity Low_complexity 1 23 0 389 221 107 29 chr12 82910002 82910187 -60876268 - MLT1H LTR MaLR 0 549 356 244 379 99 14 chr12 82910473 82910684 -60875771 - L2 LINE L2 -509 2805 2577 194 376 26 0 chr12 82910843 82910960 -60875495 - L2 LINE L2 -971 2343 2224 273 288 0 27 chr12 82911172 82911245 -60875210 - MER5B DNA MER1_type -106 72 2 635 206 89 0 chr12 82912002 82912148 -60874307 + MIR SINE MIR 103 261 -1 202 189 0 0 chr12 82912244 82912281 -60874174 + (CA)n Simple_repeat Simple_repeat 1 37 0 237 262 250 0 chr12 82912282 82912366 -60874089 + L1ME3A LINE L1 6055 6159 -11 611 263 82 59 chr12 82912394 82912428 -60874027 + MIR SINE MIR 2 34 -228 2501 39 3 7 chr12 82912428 82912738 -60873717 + AluY SINE Alu 1 309 -2 611 263 82 59 chr12 82912738 82912958 -60873497 + MIR SINE MIR 34 262 0 27 29 0 0 chr12 82913630 82913664 -60872791 + AT_rich Low_complexity Low_complexity 1 34 0 224 289 79 75 chr12 82914460 82914713 -60871742 + L3 LINE CR1 1274 1527 -50 324 143 0 0 chr12 82914827 82914883 -60871572 + (A)n Simple_repeat Simple_repeat 1 56 0 289 326 92 38 chr12 82915191 82915538 -60870917 - HAL1b LINE L1 -622 726 361 4335 141 40 8 chr12 82916063 82916794 -60869661 + Tigger2 DNA MER2_type 4 757 -1961 1398 157 44 8 chr12 82916843 82917092 -60869363 + Tigger2 DNA MER2_type 2461 2718 0 1250 226 15 18 chr12 82917095 82917427 -60869028 + L1ME1 LINE L1 5593 5923 -243 1319 225 52 30 chr12 82917646 82918051 -60868404 + L1M4 LINE L1 4517 4930 -1216 564 221 59 7 chr12 82919871 82920007 -60866448 - MER58B DNA MER1_type 0 341 199 203 217 22 0 chr12 82920163 82920209 -60866246 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 677 46 26 0 chr12 82920880 82920986 -60865469 - L1P LINE L1 -757 5409 5298 6301 37 0 0 chr12 82920986 82921739 -60864716 + L1PA4 LINE L1 5401 6154 -1 2715 168 62 12 chr12 82922163 82922724 -60863731 + L1MA9 LINE L1 5724 6312 0 764 316 98 42 chr12 82923019 82923541 -60862914 + L3 LINE CR1 598 1148 -429 2241 113 0 0 chr12 82923765 82924065 -60862390 + AluY SINE Alu 1 300 -11 1032 190 0 0 chr12 82924090 82924264 -60862191 + FAM SINE Alu 1 49 0 2449 101 33 6 chr12 82925046 82925411 -60861044 + THE1C LTR MaLR 1 375 0 638 240 117 6 chr12 82926296 82926467 -60859988 + MIR SINE MIR 39 228 -34 737 149 7 7 chr12 82929132 82929415 -60857040 + CT-rich Low_complexity Low_complexity 1 283 0 764 208 0 7 chr12 82929451 82929600 -60856855 - AluJb SINE Alu -4 308 161 317 298 119 18 chr12 82929717 82929885 -60856570 + MIR SINE MIR 23 207 -55 212 179 0 0 chr12 82929920 82929959 -60856496 + (TTA)n Simple_repeat Simple_repeat 1 39 0 698 273 77 68 chr12 82930776 82931113 -60855342 - MLT1I LTR MaLR -69 340 1 317 292 127 26 chr12 82931388 82931589 -60854866 + MIR SINE MIR 18 236 -26 741 345 101 11 chr12 82931599 82932151 -60854304 + L2 LINE L2 2709 3312 -1 532 239 151 0 chr12 82932646 82932805 -60853650 - MER33 DNA MER1_type -141 183 1 308 238 159 40 chr12 82932826 82932952 -60853503 - L1ME LINE L1 -587 5534 5394 277 324 190 6 chr12 82932956 82933135 -60853320 - MIR SINE MIR -4 258 47 1801 139 38 14 chr12 82934791 82935078 -60851377 - AluSx SINE Alu -18 294 1 6946 67 0 1 chr12 82935206 82936168 -60850287 + L1PA7 LINE L1 5193 6154 0 1322 105 0 0 chr12 82936176 82936347 -60850108 + AluSc SINE Alu 127 297 -12 315 0 0 0 chr12 82936451 82936486 -60849969 + (TTG)n Simple_repeat Simple_repeat 2 36 0 196 292 67 0 chr12 82937752 82937841 -60848614 - L3 LINE CR1 -306 1271 1177 274 306 28 28 chr12 82940338 82940446 -60846009 + MIR3 SINE MIR 95 202 -6 2289 100 10 3 chr12 82940468 82940778 -60845677 - AluSx SINE Alu 0 312 1 283 302 48 8 chr12 82940873 82940999 -60845456 + MIR SINE MIR 78 208 -54 7171 191 140 35 chr12 82941037 82942626 -60843829 - MER52A LTR ERV1 0 1755 1 733 312 40 8 chr12 82942689 82942939 -60843516 - MIR SINE MIR 0 262 5 22 0 0 0 chr12 82943556 82943578 -60842877 + AT_rich Low_complexity Low_complexity 1 22 0 212 319 14 0 chr12 82943803 82943875 -60842580 - L2 LINE L2 -1006 2308 2236 7573 28 2 0 chr12 82944411 82945652 -60840803 + L1PA4 LINE L1 4913 6155 0 489 335 97 0 chr12 82945741 82945947 -60840508 - MIR SINE MIR 0 262 37 23 0 0 0 chr12 82946113 82946136 -60840319 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 82946301 82946325 -60840130 + AT_rich Low_complexity Low_complexity 1 24 0 437 293 8 74 chr12 82947172 82947428 -60839027 - L2 LINE L2 -18 3295 3057 1146 8 8 0 chr12 82948631 82948759 -60837696 - AluY SINE Alu -182 129 1 1506 45 0 0 chr12 82948770 82948948 -60837507 + AluY SINE Alu 118 295 -16 255 161 0 0 chr12 82950764 82950820 -60835635 + (TA)n Simple_repeat Simple_repeat 2 57 0 222 333 82 47 chr12 82952087 82952258 -60834197 + MIR SINE MIR 82 258 -4 400 287 172 19 chr12 82953401 82953558 -60832897 + MER5A DNA MER1_type 9 189 0 188 391 29 23 chr12 82953598 82953772 -60832683 + MIR SINE MIR 21 195 -67 21 57 0 0 chr12 82953800 82953835 -60832620 + AT_rich Low_complexity Low_complexity 1 35 0 642 147 0 0 chr12 82953868 82953963 -60832492 - AluSg/x SINE Alu -20 290 196 618 321 48 20 chr12 82955803 82956052 -60830403 + MIR SINE MIR 3 258 -4 210 169 0 51 chr12 82956168 82956227 -60830228 + T-rich Low_complexity Low_complexity 3 58 0 26 64 0 0 chr12 82956541 82956588 -60829867 + AT_rich Low_complexity Low_complexity 1 47 0 744 82 52 45 chr12 82957288 82957422 -60829033 + AluSp/q SINE Alu 176 310 -3 600 283 52 21 chr12 82957488 82957679 -60828776 + MIR SINE MIR 42 238 -24 208 310 52 52 chr12 82957682 82957837 -60828618 + MIR SINE MIR 108 262 0 836 160 0 0 chr12 82957888 82958019 -60828436 + AluJo SINE Alu 6 136 -176 204 186 0 23 chr12 82958234 82958277 -60828178 - L3 LINE CR1 -57 1520 1479 307 339 28 34 chr12 82958345 82958522 -60827933 - MIR SINE MIR -12 250 75 200 173 19 19 chr12 82958675 82958727 -60827728 + (TA)n Simple_repeat Simple_repeat 1 52 0 311 368 22 7 chr12 82959080 82959216 -60827239 + L3 LINE CR1 1374 1511 -66 1772 146 35 45 chr12 82959674 82960051 -60826404 - THE1C LTR MaLR 0 375 3 454 305 73 62 chr12 82960095 82960449 -60826006 + L2 LINE L2 2469 2826 -488 283 364 37 16 chr12 82960722 82960909 -60825546 + L2 LINE L2 3118 3308 -5 234 335 81 37 chr12 82961345 82961506 -60824949 - L2 LINE L2 -236 3036 2869 216 271 34 0 chr12 82961566 82961625 -60824830 + (TATG)n Simple_repeat Simple_repeat 4 64 0 21 0 0 0 chr12 82962047 82962068 -60824387 + AT_rich Low_complexity Low_complexity 1 21 0 349 216 0 0 chr12 82963127 82963201 -60823254 - L1MC4 LINE L1 -6 8036 7963 649 237 80 50 chr12 82963209 82964424 -60822031 - L1MD3 LINE L1 -181 7814 6462 429 336 128 9 chr12 82964956 82965167 -60821288 + MIR SINE MIR 12 247 -15 628 237 0 0 chr12 82965270 82965405 -60821050 + AluJb SINE Alu 171 305 -7 360 268 72 59 chr12 82967040 82967193 -60819262 - MIR SINE MIR -62 200 46 200 359 13 0 chr12 82967279 82967357 -60819098 - L2 LINE L2 0 3272 3194 476 340 25 17 chr12 82967793 82968031 -60818424 - L2 LINE L2 -927 2387 2148 276 345 92 10 chr12 82968105 82968311 -60818144 - L2 LINE L2 -1193 2121 1899 37 69 0 0 chr12 82969256 82969328 -60817127 + AT_rich Low_complexity Low_complexity 1 72 0 29 0 0 0 chr12 82970592 82970621 -60815834 + AT_rich Low_complexity Low_complexity 1 29 0 3435 274 174 37 chr12 82971721 82972645 -60813810 + L2 LINE L2 600 1396 -1918 2260 93 7 0 chr12 82972645 82972947 -60813508 + AluY SINE Alu 1 304 -7 3435 274 174 37 chr12 82972947 82973203 -60813252 + L2 LINE L2 1396 1615 -1699 2080 161 46 55 chr12 82973203 82973266 -60813189 + MSTB1 LTR MaLR 1 63 -369 2199 132 0 0 chr12 82973266 82973576 -60812879 + AluSg SINE Alu 1 310 0 2080 161 46 55 chr12 82973576 82973948 -60812507 + MSTB1 LTR MaLR 63 432 0 3435 274 174 37 chr12 82973948 82974434 -60812021 + L2 LINE L2 1615 2496 -818 1454 207 3 30 chr12 82975106 82975406 -60811049 + AluJo SINE Alu 1 292 -20 15802 135 38 12 chr12 82975443 82975895 -60810560 + Tigger4(Zombi) DNA MER2_type 1 440 -2291 285 51 0 0 chr12 82975895 82975934 -60810521 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 15802 135 38 12 chr12 82975934 82978144 -60808311 + Tigger4(Zombi) DNA MER2_type 440 2731 0 547 303 147 86 chr12 82979230 82979465 -60806990 + MLT1K LTR MaLR 11 230 -358 3343 11 0 0 chr12 82979465 82979844 -60806611 + L1PA2 LINE L1 5771 6149 -6 547 303 147 86 chr12 82979844 82980110 -60806345 + MLT1K LTR MaLR 230 543 -45 601 341 41 16 chr12 82981732 82982049 -60804406 + MLT1I LTR MaLR 63 387 -22 990 218 33 0 chr12 82982058 82982269 -60804186 - MER20 DNA MER1_type 0 219 2 643 230 75 6 chr12 82982280 82982454 -60804001 + MER5A DNA MER1_type 2 187 -2 206 159 23 0 chr12 82983971 82984015 -60802440 + (TG)n Simple_repeat Simple_repeat 1 45 0 490 347 84 25 chr12 82989299 82989702 -60796753 + L3 LINE CR1 1145 1571 -6 333 316 0 26 chr12 82989868 82990020 -60796435 + CT-rich Low_complexity Low_complexity 2 149 0 1867 160 13 0 chr12 82990461 82990767 -60795688 + AluSx SINE Alu 1 310 -2 21349 99 3 5 chr12 82990886 82993251 -60793204 - L1PA7 LINE L1 -4 6465 4106 2110 124 3 0 chr12 82993251 82993542 -60792913 - AluSg SINE Alu -18 292 1 21349 99 3 5 chr12 82993542 82995086 -60791369 - L1PA7 LINE L1 -2363 4106 2561 12280 118 8 27 chr12 82995087 82995155 -60791300 - L1PA7 LINE L1 -4247 2214 2146 2348 75 0 0 chr12 82995155 82995464 -60790991 + AluY SINE Alu 1 309 0 12280 118 8 27 chr12 82995464 82997612 -60788843 - L1PA7 LINE L1 -4315 2146 11 22 35 0 0 chr12 82999640 82999669 -60786786 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 82999797 82999823 -60786632 + AT_rich Low_complexity Low_complexity 1 26 0 224 345 11 23 chr12 83000022 83000109 -60786346 - MIR SINE MIR -13 249 164 192 125 0 0 chr12 83000281 83000313 -60786142 + (TCC)n Simple_repeat Simple_repeat 2 33 0 5766 140 53 7 chr12 83000319 83001293 -60785162 - L1MC1 LINE L1 0 6333 5315 7284 41 3 7 chr12 83001296 83002875 -60783580 + L1PA5 LINE L1 4579 6154 0 199 343 59 29 chr12 83003621 83003723 -60782732 - MIR3 SINE MIR -13 195 91 185 132 0 38 chr12 83004433 83004486 -60781969 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 746 268 95 0 chr12 83004799 83005030 -60781425 + MIR SINE MIR 7 259 -3 1269 189 40 48 chr12 83006169 83006523 -60779932 - THE1C LTR MaLR -6 369 19 454 318 79 48 chr12 83006607 83006937 -60779518 + L2 LINE L2 2487 2826 -488 281 348 48 27 chr12 83007210 83007397 -60779058 + L2 LINE L2 3118 3308 -5 234 335 81 37 chr12 83007833 83007994 -60778461 - L2 LINE L2 -236 3036 2869 213 306 16 0 chr12 83008052 83008114 -60778341 + (TATG)n Simple_repeat Simple_repeat 4 66 0 348 248 0 73 chr12 83008468 83008577 -60777878 + L1MC4 LINE L1 6603 6703 -1339 1654 156 111 13 chr12 83008674 83008981 -60777474 + MER1B DNA MER1_type 1 337 0 1479 191 43 13 chr12 83009015 83009314 -60777141 - AluJb SINE Alu -4 308 1 21 57 0 0 chr12 83009640 83009675 -60776780 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr12 83009912 83009950 -60776505 + AT_rich Low_complexity Low_complexity 1 38 0 909 291 139 11 chr12 83009998 83010372 -60776083 + L2 LINE L2 2892 3313 0 29 47 0 0 chr12 83011246 83011289 -60775166 + AT_rich Low_complexity Low_complexity 1 43 0 303 352 8 0 chr12 83011396 83011521 -60774934 - HAL1 LINE L1 -843 1664 1539 241 200 29 0 chr12 83011587 83011657 -60774798 + L1MC3 LINE L1 7034 7105 -680 235 219 9 86 chr12 83011658 83011763 -60774692 + MLT1F1 LTR MaLR 45 141 -426 1380 192 69 16 chr12 83011782 83012100 -60774355 + L1MC3 LINE L1 7191 7525 -260 1973 147 13 43 chr12 83012679 83013054 -60773401 + THE1B LTR MaLR 1 364 0 322 263 42 51 chr12 83014064 83014182 -60772273 - MIR3 SINE MIR -9 199 83 443 118 13 0 chr12 83014610 83014686 -60771769 + (TA)n Simple_repeat Simple_repeat 2 78 0 2194 108 0 3 chr12 83014717 83015003 -60771452 + AluSx SINE Alu 1 285 -27 26 74 0 0 chr12 83015003 83015057 -60771398 + AT_rich Low_complexity Low_complexity 1 54 0 231 299 0 23 chr12 83016078 83016165 -60770290 + (CA)n Simple_repeat Simple_repeat 2 86 0 225 154 19 19 chr12 83017877 83017929 -60768526 + (TA)n Simple_repeat Simple_repeat 1 52 0 217 362 38 32 chr12 83018082 83018267 -60768188 + MIR SINE MIR 75 260 -2 23 54 0 0 chr12 83018350 83018387 -60768068 + GC_rich Low_complexity Low_complexity 1 37 0 255 227 35 35 chr12 83018393 83018578 -60767877 + (CGCGG)n Simple_repeat Simple_repeat 1 185 0 265 112 17 69 chr12 83018579 83018695 -60767760 + (CCCCCG)n Simple_repeat Simple_repeat 2 111 0 449 193 0 23 chr12 83069946 83070034 -60716421 + AluS SINE Alu 227 312 0 12280 118 8 23 chr12 83070035 83072179 -60714276 - L1P3 LINE L1 -4306 2155 11 304 279 97 75 chr12 83074323 83074549 -60711906 - MIR SINE MIR 0 262 32 306 250 152 24 chr12 83074927 83075091 -60711364 + MIR SINE MIR 65 249 -13 360 215 11 32 chr12 83075426 83075453 -60711002 + L1MC4 LINE L1 6612 6638 -1404 1951 124 21 11 chr12 83075453 83075736 -60710719 + AluSx SINE Alu 1 286 -26 360 215 11 32 chr12 83075736 83075801 -60710654 + L1MC4 LINE L1 6638 6702 -1340 2838 240 17 6 chr12 83075818 83076452 -60710003 + MER82 DNA MER2_type 11 651 -2 234 62 0 0 chr12 83077308 83077340 -60709115 + (GA)n Simple_repeat Simple_repeat 2 33 0 180 111 0 0 chr12 83077540 83077567 -60708888 + (TATG)n Simple_repeat Simple_repeat 2 28 0 449 282 0 0 chr12 83077578 83077688 -60708767 - L2 LINE L2 -15 3298 3189 291 215 0 0 chr12 83077734 83077799 -60708656 + (TA)n Simple_repeat Simple_repeat 2 66 0 1135 294 65 35 chr12 83077962 83078391 -60708064 - MLT1J1 LTR MaLR 0 446 5 2158 131 0 0 chr12 83078963 83079253 -60707202 + AluSx SINE Alu 1 290 -22 749 286 30 26 chr12 83080115 83080349 -60706106 - MIR SINE MIR -13 249 15 1922 150 69 12 chr12 83080691 83081024 -60705431 - THE1B LTR MaLR -2 362 11 33 43 0 0 chr12 83081732 83081779 -60704676 + AT_rich Low_complexity Low_complexity 1 47 0 183 42 0 0 chr12 83081781 83081805 -60704650 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2213 112 0 0 chr12 83081808 83082103 -60704352 - AluSc SINE Alu -14 295 1 273 29 0 0 chr12 83082478 83082512 -60703943 + (TG)n Simple_repeat Simple_repeat 1 34 0 193 282 26 13 chr12 83082993 83083071 -60703384 + L2 LINE L2 3165 3243 -70 615 230 174 6 chr12 83083558 83083587 -60702868 + MER5A DNA MER1_type 1 24 -165 198 0 0 0 chr12 83083587 83083609 -60702846 + (CAG)n Simple_repeat Simple_repeat 1 22 0 615 230 174 6 chr12 83083609 83083740 -60702715 + MER5A DNA MER1_type 24 188 -1 350 286 21 29 chr12 83084950 83085090 -60701365 - MER103 DNA DNA -15 151 13 209 387 168 7 chr12 83085162 83085299 -60701156 - MIR3 SINE MIR -48 160 2 904 224 89 23 chr12 83086707 83086921 -60699534 - MLT1B LTR MaLR -16 374 178 462 114 0 0 chr12 83086921 83086991 -60699464 + (CCTG)n Simple_repeat Simple_repeat 2 71 0 904 224 89 23 chr12 83086991 83087181 -60699274 - MLT1B LTR MaLR -212 178 2 405 239 9 46 chr12 83087386 83087495 -60698960 - Charlie8 DNA MER1_type -2232 185 81 1074 232 12 17 chr12 83088482 83088723 -60697732 + MLT1A1 LTR MaLR 23 262 -103 27 0 0 0 chr12 83088813 83088840 -60697615 + AT_rich Low_complexity Low_complexity 1 27 0 196 318 0 0 chr12 83090083 83090149 -60696306 - L2 LINE L2 0 3272 3207 354 165 11 22 chr12 83090468 83090559 -60695896 + GA-rich Low_complexity Low_complexity 2 91 0 288 383 87 0 chr12 83090602 83090785 -60695670 - MIR SINE MIR -16 246 48 242 118 75 0 chr12 83091111 83091204 -60695251 + (TA)n Simple_repeat Simple_repeat 1 100 0 349 266 124 45 chr12 83091850 83092117 -60694338 - L1ME4a LINE L1 -48 6073 5786 650 318 19 9 chr12 83092697 83092911 -60693544 - MIR SINE MIR 0 262 47 1492 44 0 0 chr12 83093056 83093067 -60693388 - L1P LINE L1 -1133 5013 5003 7704 22 0 3 chr12 83093067 83094139 -60692316 - L1PA2 LINE L1 -2 6153 5083 1492 44 0 0 chr12 83094139 83094308 -60692147 - L1P LINE L1 -1142 5004 4833 * 17266 29 1 2 chr12 83094283 83096395 -60690060 + L1P LINE L1 2722 4831 -1315 408 318 68 13 chr12 83096480 83096716 -60689739 + HAL1 LINE L1 38 286 -2221 294 384 37 32 chr12 83096734 83096924 -60689531 - L2 LINE L2 -88 3184 2994 2149 116 0 7 chr12 83096933 83097234 -60689221 + AluSq SINE Alu 1 299 -14 602 274 43 29 chr12 83097316 83097524 -60688931 + HAL1 LINE L1 307 517 -1990 230 349 61 6 chr12 83097723 83097874 -60688581 + MIR SINE MIR 1 144 -64 319 274 44 18 chr12 83097887 83098000 -60688455 - MLT1K LTR MaLR -14 574 459 247 325 75 78 chr12 83098725 83098980 -60687475 + L2 LINE L2 2927 3180 -92 237 375 0 11 chr12 83099085 83099173 -60687282 + L2 LINE L2 3186 3272 0 578 220 34 28 chr12 83099829 83100006 -60686449 - MER58 DNA MER1_type -3 2417 2240 448 130 14 0 chr12 83100100 83100169 -60686286 - MLT1B LTR MaLR 0 390 321 2367 84 0 6 chr12 83100171 83100482 -60685973 + AluSx SINE Alu 3 311 -1 202 300 125 0 chr12 83100876 83100956 -60685499 + L2 LINE L2 3179 3268 -4 2791 3 0 0 chr12 83101155 83101454 -60685001 - AluYa5 SINE Alu -12 299 1 414 0 0 0 chr12 83101968 83102014 -60684441 + (CA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr12 83102284 83102310 -60684145 + AT_rich Low_complexity Low_complexity 1 26 0 33 25 0 0 chr12 83102698 83102738 -60683717 + AT_rich Low_complexity Low_complexity 1 40 0 288 154 0 0 chr12 83102764 83102816 -60683639 + (TA)n Simple_repeat Simple_repeat 2 53 0 186 47 0 70 chr12 83104892 83104935 -60681520 + (TA)n Simple_repeat Simple_repeat 2 41 0 584 321 33 25 chr12 83106770 83107013 -60679442 - MIR SINE MIR -17 245 1 260 353 70 19 chr12 83107222 83107378 -60679077 + L2 LINE L2 2244 2407 -907 713 287 63 43 chr12 83107484 83107804 -60678651 + MLT1I LTR MaLR 96 380 -29 3427 293 82 65 chr12 83108061 83109566 -60676889 - L2 LINE L2 -1300 2014 471 1995 202 46 5 chr12 83109566 83109977 -60676478 + MSTC LTR MaLR 1 428 0 3427 293 82 65 chr12 83109977 83110297 -60676158 - L2 LINE L2 -2843 471 158 2622 89 17 3 chr12 83110671 83111030 -60675425 - THE1B LTR MaLR 0 364 1 2824 16 0 0 chr12 83114271 83114582 -60671873 + AluYa5 SINE Alu 1 311 0 1357 193 33 54 chr12 83114675 83115006 -60671449 + MLT1B LTR MaLR 1 324 -66 1249 126 11 5 chr12 83115008 83115198 -60671257 - AluSq SINE Alu -12 301 111 2016 268 212 45 chr12 83115305 83115750 -60670705 + L2 LINE L2 1110 1480 -1834 2278 90 7 0 chr12 83115750 83116051 -60670404 + AluY SINE Alu 1 303 -8 2016 268 212 45 chr12 83116051 83116307 -60670148 + L2 LINE L2 1480 1692 -1622 2074 160 46 57 chr12 83116307 83116370 -60670085 + MSTB1 LTR MaLR 1 63 -369 2176 134 0 0 chr12 83116370 83116677 -60669778 + AluSg SINE Alu 1 307 -3 2074 160 46 57 chr12 83116677 83117050 -60669405 + MSTB1 LTR MaLR 63 432 0 2016 268 212 45 chr12 83117050 83117536 -60668919 + L2 LINE L2 1692 2496 -818 1357 217 3 30 chr12 83118208 83118508 -60667947 + AluJo SINE Alu 1 292 -20 12275 137 35 10 chr12 83118545 83118997 -60667458 + Tigger4(Zombi) DNA MER2_type 1 440 -2291 285 51 0 0 chr12 83118997 83119036 -60667419 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 12275 137 35 10 chr12 83119036 83121247 -60665208 + Tigger4(Zombi) DNA MER2_type 440 2731 0 547 303 147 86 chr12 83122333 83122568 -60663887 + MLT1K LTR MaLR 11 230 -358 3343 11 0 0 chr12 83122568 83122947 -60663508 + L1PA2 LINE L1 5771 6149 -6 547 303 147 86 chr12 83122947 83123213 -60663242 + MLT1K LTR MaLR 230 543 -45 601 341 41 16 chr12 83124835 83125152 -60661303 + MLT1I LTR MaLR 63 387 -22 1004 213 33 0 chr12 83125161 83125372 -60661083 - MER20 DNA MER1_type 0 219 2 643 230 75 6 chr12 83125383 83125557 -60660898 + MER5A DNA MER1_type 2 187 -2 206 159 23 0 chr12 83127074 83127118 -60659337 + (TG)n Simple_repeat Simple_repeat 1 45 0 490 347 84 25 chr12 83132452 83132855 -60653600 + L3 LINE CR1 1145 1571 -6 333 316 0 26 chr12 83133021 83133173 -60653282 + CT-rich Low_complexity Low_complexity 2 149 0 1867 160 13 0 chr12 83133614 83133920 -60652535 + AluSx SINE Alu 1 310 -2 21342 99 3 5 chr12 83134038 83136404 -60650051 - L1PA7 LINE L1 -2 6152 3791 2110 124 3 0 chr12 83136404 83136695 -60649760 - AluSg SINE Alu -18 292 1 21342 99 3 5 chr12 83136695 83138239 -60648216 - L1PA7 LINE L1 -2363 3791 2246 386 162 0 0 chr12 83138240 83138308 -60648147 - L1PA7 LINE L1 -4247 1899 1832 230 146 42 0 chr12 83138309 83138357 -60648098 + Alu SINE Alu 1 50 -249 612 182 189 0 chr12 83138462 83138594 -60647861 + MER5A DNA MER1_type 33 189 0 1165 228 164 24 chr12 83138921 83139298 -60647157 - MLT1F1 LTR MaLR 0 567 138 1840 112 34 24 chr12 83139298 83139593 -60646862 - THE1C LTR MaLR 0 375 78 295 27 0 0 chr12 83139695 83139732 -60646723 + L1P LINE L1 4795 4831 -1315 408 318 68 13 chr12 83139817 83140053 -60646402 + HAL1 LINE L1 38 286 -2221 294 384 37 32 chr12 83140071 83140261 -60646194 - L2 LINE L2 -88 3184 2994 2149 116 0 7 chr12 83140270 83140571 -60645884 + AluSq SINE Alu 1 299 -14 602 274 43 29 chr12 83140653 83140861 -60645594 + HAL1 LINE L1 307 517 -1990 230 349 61 6 chr12 83141060 83141211 -60645244 + MIR SINE MIR 1 144 -64 319 274 44 18 chr12 83141224 83141337 -60645118 - MLT1K LTR MaLR -14 574 459 247 325 75 78 chr12 83142062 83142317 -60644138 + L2 LINE L2 2927 3180 -92 237 375 0 11 chr12 83142422 83142510 -60643945 + L2 LINE L2 3186 3272 0 578 220 34 28 chr12 83143165 83143342 -60643113 - MER58 DNA MER1_type -3 2417 2240 1691 180 15 66 chr12 83143436 83143507 -60642948 - MLT1B LTR MaLR 0 390 317 2191 110 3 3 chr12 83143507 83143806 -60642649 + AluSq SINE Alu 3 301 -12 1691 180 15 66 chr12 83143806 83144145 -60642310 - MLT1B LTR MaLR -73 317 1 2846 10 0 0 chr12 83144230 83144539 -60641916 - AluYa5 SINE Alu -2 309 1 2652 89 17 0 chr12 83147781 83148139 -60638316 + THE1B LTR MaLR 1 364 0 3421 293 82 65 chr12 83148513 83148833 -60637622 + L2 LINE L2 158 471 -2843 1816 206 51 14 chr12 83148833 83149246 -60637209 - MSTC LTR MaLR 0 428 1 3421 293 82 65 chr12 83149246 83150751 -60635704 + L2 LINE L2 471 2014 -1300 713 287 63 43 chr12 83151008 83151328 -60635127 - MLT1I LTR MaLR -29 380 96 260 353 70 19 chr12 83151434 83151590 -60634865 - L2 LINE L2 -907 2407 2244 584 321 33 25 chr12 83151799 83152042 -60634413 + MIR SINE MIR 1 245 -17 186 47 0 70 chr12 83153880 83153923 -60632532 + (TA)n Simple_repeat Simple_repeat 2 41 0 270 160 0 0 chr12 83156000 83156050 -60630405 + (TA)n Simple_repeat Simple_repeat 2 51 0 26 30 0 0 chr12 83156076 83156109 -60630346 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr12 83156497 83156523 -60629932 + AT_rich Low_complexity Low_complexity 1 26 0 324 0 0 0 chr12 83156797 83156833 -60629622 + (TG)n Simple_repeat Simple_repeat 1 36 0 2895 3 0 0 chr12 83157347 83157658 -60628797 + AluYa5 SINE Alu 1 311 0 202 300 125 0 chr12 83157861 83157941 -60628514 - L2 LINE L2 -4 3268 3179 2588 48 0 3 chr12 83158340 83158651 -60627804 - AluY SINE Alu -1 310 1 208 364 0 0 chr12 83159194 83159260 -60627195 + L2 LINE L2 3188 3253 -19 23 33 0 0 chr12 83159600 83159630 -60626825 + AT_rich Low_complexity Low_complexity 1 30 0 1396 209 19 44 chr12 83159674 83159990 -60626465 - AluJo SINE Alu -4 308 1 2062 99 18 0 chr12 83160619 83160892 -60625563 + AluSc SINE Alu 4 281 -28 238 87 0 0 chr12 83160911 83160957 -60625498 - LTR66 LTR ERVL -171 439 394 297 128 0 0 chr12 83160959 83161006 -60625449 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 231 394 40 10 chr12 83161683 83161782 -60624673 + MER91A DNA MER1_type 14 115 -81 2617 102 3 6 chr12 83162297 83162660 -60623795 - THE1B LTR MaLR 0 364 3 25 83 0 0 chr12 83163524 83163584 -60622871 + AT_rich Low_complexity Low_complexity 1 60 0 37 39 0 0 chr12 83164095 83164146 -60622309 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr12 83164827 83164850 -60621605 + AT_rich Low_complexity Low_complexity 1 23 0 681 304 65 11 chr12 83164924 83165401 -60621054 + L1ME4a LINE L1 5603 6105 -16 301 313 188 4 chr12 83166289 83166545 -60619910 + L2 LINE L2 2462 2764 -550 196 338 70 0 chr12 83167171 83167242 -60619213 - L2 LINE L2 -190 3082 3007 28 29 0 0 chr12 83167769 83167804 -60618651 + AT_rich Low_complexity Low_complexity 1 35 0 10122 112 15 2 chr12 83167986 83169435 -60617020 - THE1A-int LTR MaLR -112 1468 1 2238 128 8 8 chr12 83169439 83169790 -60616665 - THE1A LTR MaLR -4 351 1 646 249 47 16 chr12 83170562 83170810 -60615645 - L1ME1 LINE L1 -30 6136 5802 546 301 62 13 chr12 83170819 83171115 -60615340 - L1ME1 LINE L1 -411 5710 5391 661 303 34 10 chr12 83171122 83171330 -60615125 + MIR SINE MIR 30 242 -20 1421 242 53 16 chr12 83171975 83172462 -60613993 + L1ME LINE L1 4163 4667 -1479 2504 236 30 4 chr12 83172462 83172996 -60613459 + L1M2 LINE L1 1104 1651 -5198 * 10774 230 22 14 chr12 83172995 83176378 -60610077 + L1PA15-16 LINE L1 2045 5415 -1434 335 216 0 0 chr12 83176377 83176456 -60609999 + L1MA4A LINE L1 6078 6280 0 * 344 175 200 0 chr12 83176481 83176561 -60609894 + L1MA4A LINE L1 4751 4846 -1300 217 232 18 18 chr12 83176561 83176617 -60609838 + (TA)n Simple_repeat Simple_repeat 1 56 0 1622 171 44 25 chr12 83176684 83177126 -60609329 + L1MA4A LINE L1 5786 6297 -6 1113 250 51 3 chr12 83177257 83177573 -60608882 + L1ME LINE L1 5259 5589 -577 343 150 0 50 chr12 83177583 83177663 -60608792 - L1M4 LINE L1 -902 5244 5169 21 57 0 0 chr12 83177797 83177832 -60608623 + AT_rich Low_complexity Low_complexity 1 35 0 2343 124 30 3 chr12 83178241 83178604 -60607851 - THE1C LTR MaLR -2 373 1 10457 117 4 29 chr12 83178604 83180224 -60606231 - THE1C-int LTR MaLR 0 1580 1 2305 101 34 20 chr12 83180236 83180594 -60605861 - THE1C LTR MaLR -12 363 1 700 247 44 75 chr12 83180720 83181104 -60605351 - Charlie7 DNA MER1_type -1874 738 367 284 71 48 0 chr12 83181164 83181206 -60605249 - THE1B-int LTR MaLR -1536 44 1 245 118 0 0 chr12 83181206 83181240 -60605215 - THE1B LTR MaLR 0 364 331 252 380 42 24 chr12 83181241 83181454 -60605001 - Charlie7 DNA MER1_type -2304 308 92 1918 141 27 30 chr12 83181457 83181791 -60604664 + MER7A DNA MER2_type 2 332 -14 224 344 91 69 chr12 83181930 83182250 -60604205 - L2 LINE L2 -553 2761 2435 414 56 28 14 chr12 83183032 83183103 -60603352 + (TA)n Simple_repeat Simple_repeat 2 73 0 358 115 54 8 chr12 83183158 83183288 -60603167 + (TA)n Simple_repeat Simple_repeat 2 137 0 32 81 0 0 chr12 83183344 83183418 -60603037 + AT_rich Low_complexity Low_complexity 1 74 0 254 213 50 0 chr12 83185855 83185935 -60600520 + (TA)n Simple_repeat Simple_repeat 2 85 0 247 193 40 3 chr12 83186590 83186649 -60599806 + MIR SINE MIR 93 153 -55 27 0 0 0 chr12 83187374 83187401 -60599054 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 83188778 83188800 -60597655 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 36 0 chr12 83189209 83189237 -60597218 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 83190308 83190332 -60596123 + (TTATG)n Simple_repeat Simple_repeat 2 25 0 1833 158 0 0 chr12 83190335 83190620 -60595835 - AluSx SINE Alu -22 290 6 22 0 0 0 chr12 83190845 83190867 -60595588 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 83191238 83191264 -60595191 + AT_rich Low_complexity Low_complexity 1 26 0 248 263 216 29 chr12 83191410 83191581 -60594874 + MER102a DNA MER1_type 128 330 0 22 0 0 0 chr12 83191716 83191738 -60594717 + AT_rich Low_complexity Low_complexity 1 22 0 238 0 53 26 chr12 83193335 83193373 -60593082 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 27 0 0 0 chr12 83193751 83193778 -60592677 + AT_rich Low_complexity Low_complexity 1 27 0 236 260 195 16 chr12 83197547 83197670 -60588785 + MIR SINE MIR 63 207 -55 284 244 24 0 chr12 83198399 83198481 -60587974 + MER94 DNA DNA 12 95 -39 38 39 0 0 chr12 83199233 83199285 -60587170 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr12 83199442 83199481 -60586974 + AT_rich Low_complexity Low_complexity 1 39 0 378 300 225 15 chr12 83200126 83200393 -60586062 - L3 LINE CR1 -4 1573 1251 750 173 13 27 chr12 83200476 83200626 -60585829 + FRAM SINE Alu 1 147 -29 183 275 43 29 chr12 83200876 83200945 -60585510 - MIR SINE MIR -104 158 89 313 318 16 32 chr12 83204053 83204179 -60582276 + MIR SINE MIR 15 138 -124 189 299 30 0 chr12 83204782 83204849 -60581606 - MIR3 SINE MIR -25 183 115 244 277 64 43 chr12 83205298 83205392 -60581063 + L2 LINE L2 3216 3311 -2 1632 173 10 20 chr12 83206728 83207056 -60579399 - AluJo SINE Alu 0 312 7 1288 139 20 28 chr12 83207868 83208119 -60578336 + L1MA4 LINE L1 6038 6286 -14 767 251 58 0 chr12 83208203 83208394 -60578061 + MER3 DNA MER1_type 7 208 -1 261 175 0 70 chr12 83208352 83208409 -60578046 - MER3 DNA MER1_type -119 90 38 * 340 230 0 70 chr12 83208521 83208621 -60577834 - L1MC4 LINE L1 -1337 6705 6613 306 300 0 0 chr12 83208546 83208636 -60577819 + L1MC4 LINE L1 6614 6703 -1339 * 2074 110 30 10 chr12 83209220 83209521 -60576934 + AluSx SINE Alu 1 307 -5 230 0 33 0 chr12 83209521 83209551 -60576904 + (GGGAGA)n Simple_repeat Simple_repeat 4 34 0 304 276 111 70 chr12 83209696 83209895 -60576560 + Charlie8 DNA MER1_type 211 417 -2000 31 58 0 0 chr12 83210571 83210623 -60575832 + AT_rich Low_complexity Low_complexity 1 52 0 435 148 80 0 chr12 83210726 83210859 -60575596 + AluJ/FRAM SINE Alu 218 357 0 21 0 0 0 chr12 83211659 83211680 -60574775 + AT_rich Low_complexity Low_complexity 1 21 0 188 324 48 57 chr12 83215374 83215479 -60570976 - L2 LINE L2 -8 3264 3161 210 37 0 0 chr12 83216361 83216388 -60570067 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 435 38 0 0 chr12 83216502 83216555 -60569900 + (CA)n Simple_repeat Simple_repeat 1 53 0 429 284 6 59 chr12 83216790 83216959 -60569496 + MER106B DNA MER1_type 898 1057 -2 1920 199 55 62 chr12 83217183 83217745 -60568710 + L1MD1 LINE L1 5667 6224 -18 21 36 0 0 chr12 83217752 83217780 -60568675 + AT_rich Low_complexity Low_complexity 1 28 0 293 178 34 34 chr12 83219860 83219978 -60566477 + (TA)n Simple_repeat Simple_repeat 1 118 0 431 106 47 43 chr12 83219994 83220258 -60566197 + (TA)n Simple_repeat Simple_repeat 1 265 0 5509 101 16 30 chr12 83220885 83222179 -60564276 - L1PA11 LINE L1 -1 6173 4842 327 253 120 6 chr12 83222711 83222869 -60563586 + L1ME3A LINE L1 5785 5960 -202 378 293 54 28 chr12 83222894 83223127 -60563328 + L1ME3A LINE L1 5944 6161 -1 1338 201 7 52 chr12 83223136 83223444 -60563011 + AluJo SINE Alu 4 297 -5 239 254 32 0 chr12 83223659 83223722 -60562733 + GA-rich Low_complexity Low_complexity 2 66 0 1839 137 0 18 chr12 83225252 83225530 -60560925 + AluSx SINE Alu 1 273 -39 23 0 0 0 chr12 83225535 83225558 -60560897 + AT_rich Low_complexity Low_complexity 1 23 0 378 61 0 0 chr12 83226249 83226298 -60560157 + (TG)n Simple_repeat Simple_repeat 1 49 0 413 179 32 8 chr12 83226705 83226828 -60559627 + CT-rich Low_complexity Low_complexity 3 128 0 462 318 17 24 chr12 83226921 83227114 -60559341 + MIR SINE MIR 6 195 -58 21 0 0 0 chr12 83228430 83228451 -60558004 + AT_rich Low_complexity Low_complexity 1 21 0 2033 135 7 0 chr12 83228453 83228742 -60557713 + AluSx SINE Alu 1 291 -21 408 74 63 0 chr12 83228742 83228837 -60557618 + (TA)n Simple_repeat Simple_repeat 2 102 0 220 288 0 0 chr12 83228837 83228903 -60557552 - L2 LINE L2 -141 3172 3107 818 118 0 29 chr12 83229337 83229473 -60556982 + AluSg/x SINE Alu 179 310 0 726 222 45 25 chr12 83229720 83229918 -60556537 + MER105 DNA DNA 1 202 -2 22 0 0 0 chr12 83231464 83231486 -60554969 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr12 83233929 83233976 -60552479 + AT_rich Low_complexity Low_complexity 1 47 0 607 322 62 47 chr12 83234034 83234354 -60552101 + L3 LINE CR1 733 1057 -520 207 0 0 0 chr12 83234417 83234440 -60552015 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 465 302 0 7 chr12 83235159 83235298 -60551157 + MER97c DNA MER1_type? 20 157 -933 1062 345 94 38 chr12 83235481 83236396 -60550059 + L2 LINE L2 1744 2709 -605 226 178 0 0 chr12 83236471 83236516 -60549939 - L2 LINE L2 -1 3312 3268 193 311 117 29 chr12 83237854 83237957 -60548498 - L2 LINE L2 -13 3259 3148 315 313 15 0 chr12 83238271 83238338 -60548117 - L2 LINE L2 -68 3204 3137 325 327 123 48 chr12 83238644 83238913 -60547542 - L2 LINE L2 -476 2838 2550 257 309 11 0 chr12 83239698 83239792 -60546663 + (TA)n Simple_repeat Simple_repeat 2 96 0 197 339 16 0 chr12 83240301 83240363 -60546092 + MIR SINE MIR 41 103 -159 435 286 45 13 chr12 83240578 83240732 -60545723 + MIR3 SINE MIR 47 205 -3 1511 161 50 58 chr12 83243783 83244027 -60542428 - MER44D DNA MER2_type -1882 609 364 2179 120 0 3 chr12 83244027 83244327 -60542128 - AluSx SINE Alu -13 299 1 1511 161 50 58 chr12 83244327 83244424 -60542031 - MER44D DNA MER2_type -2127 364 1 191 61 30 0 chr12 83249025 83249058 -60537397 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 615 314 19 24 chr12 83249246 83249453 -60537002 - MIR SINE MIR -50 212 7 404 305 54 43 chr12 83249638 83249949 -60536506 + L2 LINE L2 2773 3084 -229 1449 210 18 73 chr12 83252580 83252976 -60533479 - MLT1A2 LTR MaLR 0 374 1 277 276 15 75 chr12 83253097 83253231 -60533224 - MIR SINE MIR -66 142 17 202 254 211 14 chr12 83257079 83257150 -60529305 + MIR SINE MIR 120 204 -58 206 203 0 17 chr12 83257277 83257336 -60529119 + (CA)n Simple_repeat Simple_repeat 1 58 0 249 128 0 0 chr12 83257949 83257996 -60528459 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 24 0 0 0 chr12 83258236 83258260 -60528195 + AT_rich Low_complexity Low_complexity 1 24 0 2229 104 3 19 chr12 83258260 83258576 -60527879 - AluY SINE Alu 0 311 1 24 32 0 0 chr12 83258628 83258659 -60527796 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr12 83261221 83261241 -60525214 + (TTA)n Simple_repeat Simple_repeat 2 21 0 215 297 90 54 chr12 83261833 83261944 -60524511 + L2 LINE L2 3199 3313 0 25 31 0 0 chr12 83263343 83263375 -60523080 + AT_rich Low_complexity Low_complexity 1 32 0 607 185 15 0 chr12 83263375 83263505 -60522950 - L1MA8 LINE L1 -3 6288 6157 21 36 0 0 chr12 83264439 83264467 -60521988 + AT_rich Low_complexity Low_complexity 1 28 0 228 143 0 0 chr12 83264775 83264817 -60521638 + (A)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr12 83265154 83265177 -60521278 + AT_rich Low_complexity Low_complexity 1 23 0 211 353 90 32 chr12 83265975 83266131 -60520324 + MIR3 SINE MIR 32 196 -12 22 0 0 0 chr12 83266481 83266503 -60519952 + AT_rich Low_complexity Low_complexity 1 22 0 290 179 0 15 chr12 83266856 83266923 -60519532 + CT-rich Low_complexity Low_complexity 2 67 0 986 179 55 50 chr12 83266936 83267154 -60519301 - AluJo SINE Alu -9 303 85 24 0 0 0 chr12 83268349 83268373 -60518082 + AT_rich Low_complexity Low_complexity 1 24 0 2059 28 0 4 chr12 83269978 83270229 -60516226 + L1PA4 LINE L1 5900 6149 -6 27 29 0 0 chr12 83271267 83271301 -60515154 + AT_rich Low_complexity Low_complexity 1 34 0 1640 109 5 0 chr12 83272721 83272941 -60513514 - AluSp SINE Alu -9 304 84 283 371 82 33 chr12 83273249 83273844 -60512611 - L2 LINE L2 -52 3220 2567 1555 182 75 68 chr12 83273870 83274299 -60512156 - MSTB1 LTR MaLR 0 432 1 752 261 27 5 chr12 83279617 83279801 -60506654 + MIR SINE MIR 40 227 -35 22 70 0 0 chr12 83279830 83279873 -60506582 + AT_rich Low_complexity Low_complexity 1 43 0 478 256 75 0 chr12 83279939 83280072 -60506383 + MIR SINE MIR 119 261 -1 382 235 39 45 chr12 83280119 83280273 -60506182 + MIR SINE MIR 111 262 0 2167 90 32 0 chr12 83280363 83280642 -60505813 + AluSg SINE Alu 1 288 -22 29 28 0 0 chr12 83280862 83280898 -60505557 + AT_rich Low_complexity Low_complexity 1 36 0 2164 106 0 23 chr12 83280962 83281264 -60505191 + AluSg SINE Alu 1 295 -15 553 137 12 62 chr12 83281658 83281753 -60504702 + Charlie5 DNA MER1_type 2411 2496 -89 1783 180 0 16 chr12 83281753 83282070 -60504385 - AluJb SINE Alu 0 312 1 553 137 12 62 chr12 83282070 83282135 -60504320 + Charlie5 DNA MER1_type 2496 2563 -22 24 0 0 0 chr12 83282628 83282652 -60503803 + AT_rich Low_complexity Low_complexity 1 24 0 309 182 0 0 chr12 83282896 83282951 -60503504 + L1MC4 LINE L1 6649 6703 -1339 231 167 0 0 chr12 83282951 83282993 -60503462 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 35 41 0 0 chr12 83283006 83283055 -60503400 + AT_rich Low_complexity Low_complexity 1 49 0 719 236 25 0 chr12 83284530 83284687 -60501768 - FRAM SINE Alu -18 158 1 1024 177 29 78 chr12 83284688 83285032 -60501423 - Charlie5 DNA MER1_type -24 2588 2262 1953 176 11 8 chr12 83285533 83285897 -60500558 - MLT1A1 LTR MaLR 0 365 1 1717 125 80 30 chr12 83289128 83289465 -60496990 + THE1C LTR MaLR 3 356 -19 1538 270 39 3 chr12 83289474 83289863 -60496592 - MLT1E2 LTR MaLR 0 626 224 394 242 167 23 chr12 83289890 83290022 -60496433 - MLT1E2 LTR MaLR -503 151 1 * 473 287 14 0 chr12 83290022 83290163 -60496292 + Charlie8 DNA MER1_type 93 235 -2182 227 339 0 0 chr12 83291080 83291139 -60495316 + MIR SINE MIR 2 60 -202 1133 226 12 77 chr12 83291144 83291480 -60494975 + MLT1A1 LTR MaLR 2 315 -50 769 192 19 70 chr12 83291570 83291893 -60494562 + MLT1A2 LTR MaLR 2 363 -2 258 313 223 6 chr12 83291895 83292061 -60494394 + MIR SINE MIR 61 262 0 228 385 0 12 chr12 83293446 83293529 -60492926 + MIR SINE MIR 21 102 -160 2683 184 30 35 chr12 83293536 83294079 -60492376 + MLT1F1 LTR MaLR 1 540 -27 865 208 49 6 chr12 83294152 83294335 -60492120 - MER3 DNA MER1_type -2 207 17 1254 207 45 36 chr12 83294336 83294645 -60491810 - AluJo SINE Alu 0 312 1 23 68 0 0 chr12 83294746 83294790 -60491665 + AT_rich Low_complexity Low_complexity 1 44 0 238 36 0 0 chr12 83296875 83296903 -60489552 - Alu SINE Alu -210 92 65 1404 136 14 5 chr12 83296903 83297123 -60489332 + AluSp SINE Alu 81 302 -11 2311 92 83 6 chr12 83297614 83297963 -60488492 + MER51B LTR ERV1 2 377 0 1844 213 70 19 chr12 83298571 83299055 -60487400 - MER67D LTR ERV1 -4 510 2 291 367 110 43 chr12 83300348 83300648 -60485807 + L2 LINE L2 2651 2970 -344 632 306 80 44 chr12 83300726 83300816 -60485639 - L2 LINE L2 -6 3307 3222 462 49 0 0 chr12 83300816 83300877 -60485578 + (CA)n Simple_repeat Simple_repeat 2 62 0 632 306 80 44 chr12 83300877 83301276 -60485179 - L2 LINE L2 -91 3222 2541 1804 147 125 52 chr12 83301309 83301695 -60484760 + MLT2C2 LTR ERVL 5 361 -103 279 0 0 0 chr12 83301695 83301726 -60484729 + (CA)n Simple_repeat Simple_repeat 2 32 0 1804 147 125 52 chr12 83301726 83301739 -60484716 + MLT2C2 LTR ERVL 361 372 -92 198 0 0 0 chr12 83301739 83301761 -60484694 + (TG)n Simple_repeat Simple_repeat 1 22 0 1804 147 125 52 chr12 83301761 83301783 -60484672 + MLT2C2 LTR ERVL 372 458 -6 458 250 135 16 chr12 83301796 83301988 -60484467 - L2 LINE L2 -856 2458 2244 574 293 131 4 chr12 83302397 83302656 -60483799 - L2 LINE L2 -1067 2247 1956 378 350 36 36 chr12 83302679 83302899 -60483556 + L2 LINE L2 2351 2570 -744 186 43 0 0 chr12 83303111 83303134 -60483321 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 995 79 0 0 chr12 83303246 83303373 -60483082 - THE1C LTR MaLR 0 375 249 274 85 0 0 chr12 83303371 83303418 -60483037 - LTR66 LTR ERVL -170 440 394 * 274 192 0 20 chr12 83303461 83303560 -60482895 + (TA)n Simple_repeat Simple_repeat 2 98 0 228 67 0 0 chr12 83304211 83304241 -60482214 + (T)n Simple_repeat Simple_repeat 1 30 0 447 222 124 0 chr12 83305027 83305180 -60481275 - L1MD3 LINE L1 0 7995 7824 * 2102 243 51 17 chr12 83305175 83305866 -60480589 - L1MC4a LINE L1 -1841 5967 5254 578 279 0 41 chr12 83306148 83306320 -60480135 - LTR16C LTR ERVL 0 491 327 562 300 66 84 chr12 83308085 83308372 -60478083 + L2 LINE L2 2745 3029 -284 1987 201 45 20 chr12 83308372 83308865 -60477590 + MLT1D LTR MaLR 1 505 0 562 300 66 84 chr12 83308865 83309068 -60477387 + L2 LINE L2 3029 3234 -79 2346 82 0 25 chr12 83309907 83310226 -60476229 - AluY SINE Alu 0 311 1 445 324 38 86 chr12 83311595 83312314 -60474141 + L2 LINE L2 1789 2472 -842 2321 91 0 10 chr12 83313561 83313869 -60472586 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr12 83316004 83316034 -60470421 + AT_rich Low_complexity Low_complexity 1 30 0 374 235 0 0 chr12 83317064 83317145 -60469310 - MIR SINE MIR -20 242 162 749 306 101 40 chr12 83317150 83317594 -60468861 + MLT1J LTR MaLR 1 471 -40 372 296 59 22 chr12 83317627 83317762 -60468693 - MIR SINE MIR -93 169 30 32608 64 8 26 chr12 83317845 83322134 -60464321 - L1PA5 LINE L1 0 6154 1848 1027 101 0 0 chr12 83322134 83322272 -60464183 - AluYa8 SINE Alu -8 302 165 32608 64 8 26 chr12 83322272 83324079 -60462376 - L1PA5 LINE L1 -4306 1848 11 383 377 55 51 chr12 83324754 83325027 -60461428 + L2 LINE L2 2986 3259 -13 230 309 0 0 chr12 83326934 83327002 -60459453 + (TG)n Simple_repeat Simple_repeat 1 68 0 282 205 39 13 chr12 83327406 83327484 -60458971 - MLT1I LTR MaLR -22 387 308 650 320 91 46 chr12 83327585 83328079 -60458376 + L2 LINE L2 2551 3077 -195 2324 65 3 0 chr12 83328258 83328549 -60457906 + AluY SINE Alu 1 292 -19 4403 92 25 6 chr12 83329134 83329818 -60456637 - L1P LINE L1 -2454 3692 2996 21 0 0 0 chr12 83330306 83330327 -60456128 + AT_rich Low_complexity Low_complexity 1 21 0 343 244 173 32 chr12 83331082 83331238 -60455217 + MER5A DNA MER1_type 8 185 -4 853 231 68 21 chr12 83331274 83331508 -60454947 + MIR SINE MIR 15 259 -3 200 286 48 71 chr12 83331745 83331829 -60454626 + MIR SINE MIR 11 92 -170 2094 252 81 14 chr12 83331895 83332824 -60453631 - L1M4 LINE L1 -1095 5051 4061 307 273 57 0 chr12 83333265 83333353 -60453102 + L2 LINE L2 3179 3271 -1 21 0 0 0 chr12 83333664 83333685 -60452770 + AT_rich Low_complexity Low_complexity 1 21 0 335 250 111 17 chr12 83333735 83333915 -60452540 - L1ME3 LINE L1 -286 5876 5680 302 277 60 21 chr12 83334116 83334401 -60452054 - L1ME3 LINE L1 -747 5399 5104 487 282 63 20 chr12 83334421 83334676 -60451779 - L1ME3 LINE L1 -1406 4740 4475 756 207 7 0 chr12 83334818 83334985 -60451470 - FRAM SINE Alu 0 174 7 405 272 98 93 chr12 83335240 83335786 -60450669 + MLT1H1 LTR MaLR 14 550 -5 385 278 109 67 chr12 83335790 83336103 -60450352 - L1ME3 LINE L1 -2040 4106 3781 410 302 85 79 chr12 83336642 83336758 -60449697 - L1ME3 LINE L1 -3154 2992 2878 2039 146 0 0 chr12 83336758 83337060 -60449395 - AluSx SINE Alu -7 305 4 410 302 85 79 chr12 83337060 83337103 -60449352 - L1ME3 LINE L1 -3268 2878 2837 1967 127 3 38 chr12 83337103 83337419 -60449036 - AluSg SINE Alu -5 305 1 410 302 85 79 chr12 83337419 83337951 -60448504 - L1ME3 LINE L1 -3309 2837 2296 21 0 0 0 chr12 83337976 83337997 -60448458 + AT_rich Low_complexity Low_complexity 1 21 0 10931 210 105 23 chr12 83338170 83342994 -60443461 - L1PA15 LINE L1 0 6816 2388 2460 132 6 3 chr12 83342994 83343357 -60443098 + THE1B LTR MaLR 1 364 0 9921 113 49 9 chr12 83343357 83344876 -60441579 + THE1B-int LTR MaLR 1 1580 0 2300 150 11 3 chr12 83344876 83345237 -60441218 + THE1B LTR MaLR 1 364 0 10931 210 105 23 chr12 83345237 83345462 -60440993 - L1PA15 LINE L1 -4427 2389 1326 1655 345 17 42 chr12 83345473 83346317 -60440138 - L1PA15 LINE L1 -5867 920 98 246 265 0 0 chr12 83346492 83346541 -60439914 - L1PA15 LINE L1 -6738 49 1 294 300 90 105 chr12 83347764 83348154 -60438301 - MLT1K LTR MaLR -17 571 188 1878 161 3 0 chr12 83348412 83348710 -60437745 + AluSx SINE Alu 4 302 -10 413 293 153 18 chr12 83349618 83349847 -60436608 + MIR SINE MIR 1 260 -2 28 0 0 0 chr12 83351654 83351682 -60434773 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 83351708 83351737 -60434718 + AT_rich Low_complexity Low_complexity 1 29 0 194 386 112 11 chr12 83354014 83354281 -60432174 + L2 LINE L2 2897 3190 -123 1149 91 7 0 chr12 83355962 83356116 -60430339 - AluY SINE Alu 0 311 157 22 35 0 0 chr12 83357934 83357963 -60428492 + AT_rich Low_complexity Low_complexity 1 29 0 2942 158 40 23 chr12 83358581 83359099 -60427356 + MER1A DNA MER1_type 1 527 0 228 143 0 0 chr12 83360548 83360590 -60425865 + (A)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr12 83360927 83360950 -60425505 + AT_rich Low_complexity Low_complexity 1 23 0 206 365 90 32 chr12 83361748 83361904 -60424551 + MIR3 SINE MIR 32 196 -12 24 0 0 0 chr12 83363009 83363033 -60423422 + AT_rich Low_complexity Low_complexity 1 24 0 186 324 34 89 chr12 83363266 83363445 -60423010 + L2 LINE L2 2915 3083 -189 23 0 0 0 chr12 83364543 83364566 -60421889 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr12 83365143 83365184 -60421271 + AT_rich Low_complexity Low_complexity 1 41 0 989 214 120 41 chr12 83366133 83366400 -60420055 - AluJo SINE Alu -14 288 1 641 253 62 34 chr12 83367576 83367754 -60418701 - MER21B LTR ERV1 -396 467 285 1063 193 147 11 chr12 83367757 83368022 -60418433 + MER21B LTR ERV1 501 801 -62 218 330 44 22 chr12 83368104 83368195 -60418260 - L2 LINE L2 -193 3079 2987 293 329 121 0 chr12 83368481 83368621 -60417834 - MLT1K LTR MaLR -163 425 269 * 344 295 77 33 chr12 83368617 83368800 -60417655 - MLT1K LTR MaLR -217 371 181 196 296 157 0 chr12 83370285 83370393 -60416062 + MIR SINE MIR 49 173 -89 217 270 122 14 chr12 83370826 83370900 -60415555 + L2 LINE L2 2182 2263 -1051 311 267 23 12 chr12 83370931 83371017 -60415438 - L2 LINE L2 0 3313 3227 202 351 35 35 chr12 83371021 83371195 -60415260 + L2 LINE L2 2329 2502 -812 237 250 129 71 chr12 83372085 83372225 -60414230 - L2 LINE L2 0 3313 3166 278 274 75 38 chr12 83372492 83372598 -60413857 - L2 LINE L2 -5 3308 3199 235 288 50 12 chr12 83373037 83373117 -60413338 + MIR SINE MIR 104 186 -76 546 278 214 24 chr12 83373277 83373630 -60412825 + L2 LINE L2 2597 3016 -297 215 222 56 19 chr12 83374569 83374623 -60411832 + L2 LINE L2 3217 3272 0 2157 200 26 7 chr12 83374709 83375168 -60411287 - MER45B DNA AcHobo -92 948 481 792 308 31 0 chr12 83375178 83375405 -60411050 - MER45B DNA AcHobo -806 234 1 414 225 75 17 chr12 83375525 83375645 -60410810 + MIR SINE MIR 50 176 -86 352 296 82 15 chr12 83376378 83376513 -60409942 + L2 LINE L2 2644 2787 -527 466 308 138 49 chr12 83376591 83376981 -60409474 + L2 LINE L2 2887 3311 -2 429 281 129 6 chr12 83377702 83377873 -60408582 + MER58 DNA MER1_type 1 192 -2228 511 241 92 92 chr12 83377939 83378188 -60408267 + MER39 LTR ERV1 250 498 -209 2844 102 24 72 chr12 83378189 83378562 -60407893 + MER4B LTR ERV1 126 469 -141 2188 111 0 3 chr12 83378562 83378860 -60407595 + AluSc SINE Alu 2 298 -11 2844 102 24 72 chr12 83378860 83378996 -60407459 + MER4B LTR ERV1 469 610 0 810 86 16 31 chr12 83379036 83379164 -60407291 + LTR23 LTR ERV1 283 408 -29 3441 160 13 18 chr12 83379207 83379295 -60407160 + MER50 LTR ERV1 119 206 -528 5449 68 61 1 chr12 83379295 83380031 -60406424 - LTR17 LTR ERV1 0 780 1 3441 160 13 18 chr12 83380031 83380561 -60405894 + MER50 LTR ERV1 206 734 0 925 287 102 27 chr12 83382437 83382928 -60403527 - L2 LINE L2 -58 3255 2727 287 362 123 0 chr12 83384408 83384546 -60401909 - MIR3 SINE MIR -11 197 43 2298 68 0 0 chr12 83384585 83384897 -60401558 + AluY SINE Alu 1 312 0 644 199 145 22 chr12 83385309 83385512 -60400943 + L1MD3 LINE L1 6133 7985 -10 296 234 0 0 chr12 83385555 83385619 -60400836 + Charlie4 DNA MER1_type 1898 1961 0 34 42 0 0 chr12 83386161 83386209 -60400246 + AT_rich Low_complexity Low_complexity 1 48 0 1381 255 69 21 chr12 83386670 83387106 -60399349 - MLT1C LTR MaLR -3 464 8 197 281 6 129 chr12 83387300 83387471 -60398984 - MIR SINE MIR -65 197 48 416 215 20 13 chr12 83388724 83388873 -60397582 + CT-rich Low_complexity Low_complexity 3 152 0 265 360 23 0 chr12 83389023 83389109 -60397346 - L2 LINE L2 0 3272 3185 894 278 93 31 chr12 83389591 83390173 -60396282 + L2 LINE L2 2678 3308 -5 262 267 8 133 chr12 83392317 83392437 -60394018 - L2 LINE L2 0 3313 3209 3095 99 27 11 chr12 83392679 83393125 -60393330 - MLT2A2 LTR ERVL 0 453 1 357 332 82 45 chr12 83394086 83394462 -60391993 + L1MEd LINE L1 868 1257 -4862 338 310 120 18 chr12 83394552 83394826 -60391629 + HAL1b LINE L1 406 707 -641 1185 212 119 44 chr12 83395227 83395637 -60390818 - LTR47B LTR ERVL -2 441 1 325 272 87 0 chr12 83395650 83395753 -60390702 - MIR SINE MIR -26 236 125 322 345 91 48 chr12 83395876 83396041 -60390414 + L2 LINE L2 3101 3272 0 21 36 0 0 chr12 83396331 83396359 -60390096 + AT_rich Low_complexity Low_complexity 1 28 0 242 277 147 59 chr12 83397895 83398133 -60388322 - MLT1J LTR MaLR -114 397 139 15809 177 79 17 chr12 83398905 83403080 -60383375 + L1MA3 LINE L1 2 4763 -2961 1700 176 3 16 chr12 83403080 83403386 -60383069 - AluJb SINE Alu -8 304 3 15809 177 79 17 chr12 83403386 83405985 -60380470 + L1MA3 LINE L1 4763 7201 -523 1876 65 0 8 chr12 83405990 83406238 -60380217 + L1PA6 LINE L1 5909 6154 0 2750 142 26 42 chr12 83406474 83406489 -60379966 + L1MA3 LINE L1 7188 7202 -522 2157 112 100 0 chr12 83406489 83406820 -60379635 + THE1B LTR MaLR 1 364 0 2750 142 26 42 chr12 83406820 83407347 -60379108 + L1MA3 LINE L1 7202 7721 -3 264 351 61 34 chr12 83407665 83407813 -60378642 - L2 LINE L2 -568 2746 2595 336 356 144 22 chr12 83409666 83410200 -60376255 + L2 LINE L2 2298 2896 -418 1553 218 60 52 chr12 83410638 83411139 -60375316 - MLT1D LTR MaLR 0 505 1 32 0 0 0 chr12 83411258 83411290 -60375165 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr12 83412372 83412394 -60374061 + (ATG)n Simple_repeat Simple_repeat 3 24 0 1651 279 111 13 chr12 83413227 83413696 -60372759 + MLT1E LTR MaLR 13 527 -66 3317 179 57 10 chr12 83413717 83414423 -60372032 - L1MD1 LINE L1 -17 6619 5881 227 204 10 87 chr12 83414428 83414531 -60371924 - L1MC4 LINE L1 -1339 6703 6609 1044 217 32 46 chr12 83414566 83414847 -60371608 - AluJo SINE Alu -35 277 1 1661 239 48 38 chr12 83414852 83415520 -60370935 - L1MD1 LINE L1 -745 5795 5179 552 242 0 16 chr12 83415543 83415671 -60370784 - L1MD1 LINE L1 -6400 140 15 2172 123 131 13 chr12 83415938 83416321 -60370134 - MSTA LTR MaLR 0 428 1 319 298 107 51 chr12 83416330 83416508 -60369947 - MER5A DNA MER1_type -1 188 1 183 289 0 0 chr12 83416787 83416839 -60369616 + MIR SINE MIR 153 204 -58 186 171 0 0 chr12 83417493 83417534 -60368921 + (CA)n Simple_repeat Simple_repeat 2 42 0 452 297 41 57 chr12 83419247 83419493 -60366962 + L2 LINE L2 3034 3275 -38 1681 161 55 73 chr12 83420567 83420964 -60365491 + MLT1B LTR MaLR 1 390 0 198 280 20 0 chr12 83421263 83421313 -60365142 - MIR SINE MIR -138 70 20 237 224 0 0 chr12 83423786 83423835 -60362620 + CT-rich Low_complexity Low_complexity 1 49 0 188 312 202 0 chr12 83424403 83424512 -60361943 - L2 LINE L2 0 3313 3183 189 256 37 165 chr12 83425680 83425844 -60360611 + MIR SINE MIR 34 176 -86 2060 153 0 25 chr12 83425958 83426278 -60360177 - AluSx SINE Alu 0 312 1 22 35 0 0 chr12 83426326 83426355 -60360100 + AT_rich Low_complexity Low_complexity 1 29 0 2051 132 0 24 chr12 83426957 83427298 -60359157 - L1PA15 LINE L1 -19 6146 5814 1629 103 19 0 chr12 83427316 83427732 -60358723 - L1PA13 LINE L1 0 6163 5583 763 134 8 0 chr12 83427733 83427852 -60358603 + L1PA13 LINE L1 5459 5578 -587 277 297 229 40 chr12 83427891 83428066 -60358389 - MIR SINE MIR -8 254 47 195 375 52 10 chr12 83428780 83428876 -60357579 + L2 LINE L2 3208 3307 -6 233 294 147 0 chr12 83429164 83429273 -60357182 - MIR SINE MIR -69 193 69 23 0 0 0 chr12 83429584 83429607 -60356848 + AT_rich Low_complexity Low_complexity 1 23 0 203 250 12 88 chr12 83430049 83430129 -60356326 + L2 LINE L2 3121 3194 -78 21 71 0 0 chr12 83430841 83430883 -60355572 + AT_rich Low_complexity Low_complexity 1 42 0 819 306 57 20 chr12 83431346 83431647 -60354808 + MLT1I LTR MaLR 98 409 0 2155 127 13 0 chr12 83434139 83434446 -60352009 + AluSx SINE Alu 1 311 -1 1489 180 38 73 chr12 83434827 83435144 -60351311 - AluSx SINE Alu -4 308 3 242 210 62 0 chr12 83435144 83435225 -60351230 - MER3 DNA MER1_type 0 2549 2464 533 203 68 20 chr12 83435271 83435419 -60351036 - MER3 DNA MER1_type -82 127 20 208 319 53 11 chr12 83436613 83436707 -60349748 - MIR SINE MIR -109 153 56 207 88 0 0 chr12 83437195 83437229 -60349226 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 381 22 0 0 chr12 83437433 83437479 -60348976 + (TG)n Simple_repeat Simple_repeat 1 46 0 864 144 0 0 chr12 83437480 83437605 -60348850 - AluSg/x SINE Alu -32 280 156 1154 189 77 5 chr12 83437758 83438068 -60348387 + MER33 DNA MER1_type 1 323 -1 1254 209 29 52 chr12 83438077 83438426 -60348029 - MER58B DNA MER1_type 0 341 1 217 328 0 52 chr12 83438918 83438976 -60347479 - L2 LINE L2 -95 3177 3123 2244 93 3 0 chr12 83439002 83439293 -60347162 + AluSp SINE Alu 1 292 -21 470 255 181 0 chr12 83439333 83439482 -60346973 - MER5A DNA MER1_type -2 187 12 395 242 50 42 chr12 83439483 83439603 -60346852 + L2 LINE L2 3192 3312 -1 233 313 0 0 chr12 83440119 83440183 -60346272 - MIR3 SINE MIR -5 203 140 319 213 12 25 chr12 83440409 83440489 -60345966 - L3 LINE CR1 -257 1320 1242 512 345 117 32 chr12 83440559 83441121 -60345334 - L2 LINE L2 -33 3239 2631 244 231 19 0 chr12 83441179 83441231 -60345224 - MER5A DNA MER1_type -92 97 45 359 280 91 11 chr12 83441247 83441422 -60345033 - L2 LINE L2 -707 2607 2419 639 336 24 12 chr12 83442712 83442959 -60343496 + MLT1J2 LTR MaLR 34 283 -167 200 311 8 25 chr12 83443792 83443914 -60342541 + GA-rich Low_complexity Low_complexity 4 123 0 237 300 0 0 chr12 83444162 83444252 -60342203 - L1MC4 LINE L1 -1339 6703 6614 256 384 65 34 chr12 83444385 83444648 -60341807 + L2 LINE L2 2581 2851 -463 487 291 100 39 chr12 83444815 83445045 -60341410 - MIR SINE MIR -11 251 8 218 243 43 29 chr12 83445073 83445143 -60341312 + L2 LINE L2 3165 3235 -78 234 351 78 32 chr12 83446544 83446698 -60339757 - MIR3 SINE MIR -31 177 17 1453 216 124 6 chr12 83448037 83448384 -60338071 - MSTD LTR MaLR -8 388 1 302 298 41 25 chr12 83448417 83448538 -60337917 - MLT1J LTR MaLR -316 195 73 229 195 0 0 chr12 83448686 83448727 -60337728 - MLT1J1 LTR MaLR -156 290 250 22 0 0 0 chr12 83450155 83450177 -60336278 + AT_rich Low_complexity Low_complexity 1 22 0 1071 278 51 29 chr12 83450411 83450838 -60335617 - MLT1J LTR MaLR -35 476 3 326 258 106 0 chr12 83450844 83450976 -60335479 + MER112 DNA MER1_type 80 225 -35 23 0 0 0 chr12 83451787 83451810 -60334645 + AT_rich Low_complexity Low_complexity 1 23 0 190 305 34 0 chr12 83452683 83452742 -60333713 + L2 LINE L2 3248 3308 -5 1087 142 22 6 chr12 83453975 83454158 -60332297 - L1M2 LINE L1 -513 5787 5602 * 2176 153 13 3 chr12 83454157 83454548 -60331907 + L1 LINE L1 4741 5135 -1011 185 276 134 60 chr12 83454560 83454694 -60331761 - L2 LINE L2 0 3272 3129 1789 203 18 6 chr12 83454705 83455045 -60331410 - MER2 DNA MER2_type 0 344 1 181 304 65 33 chr12 83455200 83455292 -60331163 - L2 LINE L2 -671 2643 2549 1481 318 45 58 chr12 83455508 83456181 -60330274 + MER115 DNA AcHobo 13 676 -17 500 286 89 33 chr12 83456324 83456862 -60329593 + L1MEc LINE L1 1156 1670 -860 1466 177 73 58 chr12 83456977 83457321 -60329134 + MLT1B LTR MaLR 1 349 -41 1399 202 32 7 chr12 83457839 83458121 -60328334 + AluJo SINE Alu 1 289 -13 23 68 0 0 chr12 83458173 83458217 -60328238 + AT_rich Low_complexity Low_complexity 1 44 0 2036 148 36 36 chr12 83459095 83459453 -60327002 + THE1B LTR MaLR 7 364 0 11023 111 3 21 chr12 83459454 83461035 -60325420 + THE1B-int LTR MaLR 2 1553 -27 2254 130 30 25 chr12 83461094 83461456 -60324999 + THE1B LTR MaLR 1 364 0 531 188 0 117 chr12 83461456 83461584 -60324871 - MER20 DNA MER1_type -106 113 1 660 254 109 58 chr12 83462038 83462211 -60324244 - L1MC5 LINE L1 -36 7925 7762 1724 107 95 0 chr12 83462211 83462464 -60323991 - AluSq SINE Alu -13 300 24 660 254 109 58 chr12 83462464 83462905 -60323550 - L1MC5 LINE L1 -199 7762 7280 1463 129 23 4 chr12 83463175 83463431 -60323024 - L1MA1 LINE L1 0 6302 6042 288 306 30 8 chr12 83463454 83463588 -60322867 + MARNA DNA Mariner 434 570 -16 1769 183 10 37 chr12 83464533 83464916 -60321539 + MER93b LTR ERV1 1 373 0 225 354 60 60 chr12 83465056 83465392 -60321063 - L2 LINE L2 -347 2967 2632 186 43 0 0 chr12 83465630 83465653 -60320802 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr12 83465972 83465997 -60320458 + AT_rich Low_complexity Low_complexity 1 25 0 282 348 93 49 chr12 83466620 83466780 -60319675 - L2 LINE L2 0 3313 3141 2097 125 7 0 chr12 83466780 83467083 -60319372 - AluSx SINE Alu -7 305 1 282 348 93 49 chr12 83467083 83467126 -60319329 - L2 LINE L2 -172 3141 3101 1580 176 22 0 chr12 83467190 83467457 -60318998 + AluJo SINE Alu 9 281 -31 550 305 56 19 chr12 83467486 83467699 -60318756 - L2 LINE L2 -247 3066 2846 1189 268 25 6 chr12 83467777 83468094 -60318361 - MER74B LTR ERVL -94 528 206 2204 85 0 0 chr12 83468244 83468562 -60317893 + AluY SINE Alu 4 321 0 559 270 18 31 chr12 83468567 83468730 -60317725 - L2 LINE L2 -461 2853 2693 2045 130 0 0 chr12 83468732 83469016 -60317439 + AluSx SINE Alu 1 284 -28 1868 270 130 50 chr12 83469040 83469451 -60317004 - L2 LINE L2 -920 2394 2018 1981 117 0 7 chr12 83469451 83469724 -60316731 - AluSp SINE Alu -30 283 13 1868 270 130 50 chr12 83469724 83470279 -60316176 - L2 LINE L2 -1296 2018 1350 346 352 79 55 chr12 83470735 83470988 -60315467 - L2 LINE L2 -359 2955 2697 27 0 0 0 chr12 83471903 83471930 -60314525 + AT_rich Low_complexity Low_complexity 1 27 0 516 319 46 12 chr12 83472574 83472883 -60313572 + MLT1L LTR MaLR 200 575 -40 2156 146 69 28 chr12 83473473 83473863 -60312592 - MSTB LTR MaLR -20 406 1 430 374 50 16 chr12 83474100 83474566 -60311889 + MLT1J LTR MaLR 5 511 0 340 281 37 0 chr12 83474679 83474761 -60311694 - MLT1J LTR MaLR -426 85 1 1758 163 7 3 chr12 83474833 83475116 -60311339 - AluSx SINE Alu -23 289 6 483 242 5 113 chr12 83475805 83475999 -60310456 - MER5B DNA MER1_type -5 173 1 704 216 6 25 chr12 83476196 83476358 -60310097 + MER3 DNA MER1_type 10 168 -41 477 292 82 12 chr12 83476876 83477047 -60309408 - MIR SINE MIR -18 244 62 396 252 94 29 chr12 83478094 83478284 -60308171 - MIR SINE MIR -13 249 44 791 275 34 88 chr12 83478926 83479449 -60307006 + L1MC/D LINE L1 5265 5759 -2049 416 299 108 47 chr12 83480357 83480571 -60305884 - MIR SINE MIR -30 232 6 1535 252 108 13 chr12 83480599 83481051 -60305404 - LTR40a LTR ERVL -24 495 1 872 175 25 0 chr12 83481132 83481292 -60305163 + L1 LINE L1 5 168 -5160 * 1708 221 38 33 chr12 83481283 83481911 -60304544 + L1 LINE L1 2934 3564 -2764 21 36 0 0 chr12 83482009 83482037 -60304418 + AT_rich Low_complexity Low_complexity 1 28 0 1901 97 115 35 chr12 83482579 83482918 -60303537 + MER4E LTR ERV1 1 366 -413 231 92 64 12 chr12 83482918 83483135 -60303320 + AluSg SINE Alu 3 297 -5 * 2698 79 4 23 chr12 83483130 83483243 -60303212 + MER4E LTR ERV1 352 466 -300 2033 126 14 0 chr12 83483243 83483528 -60302927 - AluSx SINE Alu -23 289 1 2698 79 4 23 chr12 83483528 83483851 -60302604 + MER4E LTR ERV1 466 766 0 2176 84 3 3 chr12 83485173 83485478 -60300977 - AluSp SINE Alu 0 305 1 482 287 67 30 chr12 83486192 83486227 -60300228 + MLT1J LTR MaLR 1 33 -478 2564 45 0 10 chr12 83486227 83486541 -60299914 - AluY SINE Alu 0 311 1 482 287 67 30 chr12 83486541 83486669 -60299786 + MLT1J LTR MaLR 33 170 -341 380 298 112 31 chr12 83487149 83487310 -60299145 - L3 LINE CR1 -320 1257 1084 28 0 0 0 chr12 83487599 83487627 -60298828 + AT_rich Low_complexity Low_complexity 1 28 0 209 271 51 93 chr12 83487636 83487754 -60298701 - L3 LINE CR1 -909 668 556 329 307 0 0 chr12 83488793 83488881 -60297574 + L1MC4 LINE L1 6616 6703 -1339 189 154 0 0 chr12 83488882 83488921 -60297534 + (TA)n Simple_repeat Simple_repeat 2 40 0 208 372 54 8 chr12 83489169 83489298 -60297157 + MIR SINE MIR 11 145 -117 12460 206 64 11 chr12 83490068 83490532 -60295923 - L1MA4 LINE L1 -5 6477 6039 387 0 0 0 chr12 83490532 83490575 -60295880 + (TG)n Simple_repeat Simple_repeat 2 44 0 12460 206 64 11 chr12 83490575 83496252 -60290203 - L1MA4 LINE L1 -443 6039 1 1278 210 72 35 chr12 83496550 83496926 -60289529 - MLT1B LTR MaLR 0 390 1 209 294 128 37 chr12 83497259 83497368 -60289087 - L2 LINE L2 -7 3306 3188 647 249 53 11 chr12 83497431 83497620 -60288835 + L1MB7 LINE L1 5981 6177 -7 289 355 37 9 chr12 83497812 83497919 -60288536 + MIR SINE MIR 2 111 -151 321 287 46 0 chr12 83498097 83498184 -60288271 + MIR SINE MIR 53 143 -119 651 286 128 50 chr12 83498184 83498633 -60287822 - MLT1H1 LTR MaLR 0 555 71 2903 141 50 95 chr12 83498633 83499273 -60287182 + LTR18B LTR ERVL 4 614 0 249 296 84 63 chr12 83499392 83499534 -60286921 - MLT1H1-int LTR MaLR -25 1346 1202 209 294 212 0 chr12 83499867 83499952 -60286503 + L2 LINE L2 3169 3271 -1 1563 128 62 45 chr12 83500671 83500960 -60285495 - AluSx SINE Alu -18 294 1 941 184 52 0 chr12 83501114 83501288 -60285167 - MER5A DNA MER1_type -3 186 4 2048 77 6 100 chr12 83501357 83501696 -60284759 - AluY SINE Alu -4 307 1 269 222 63 0 chr12 83501697 83501760 -60284695 + MER21B LTR ERV1 650 716 -147 4984 179 24 22 chr12 83501778 83503091 -60283364 - L1MA4 LINE L1 -14 6286 4970 302 322 43 0 chr12 83503574 83503689 -60282766 + MIR SINE MIR 70 189 -73 21 57 0 0 chr12 83503767 83503802 -60282653 + AT_rich Low_complexity Low_complexity 1 35 0 347 282 164 23 chr12 83504180 83504400 -60282055 - MIR SINE MIR 0 262 12 1388 234 81 62 chr12 83505524 83505995 -60280460 - MLT1D LTR MaLR -18 487 8 213 234 13 39 chr12 83507235 83507312 -60279143 + CT-rich Low_complexity Low_complexity 4 78 0 226 350 48 10 chr12 83509086 83509189 -60277266 - L2 LINE L2 -609 2705 2599 330 264 8 74 chr12 83509790 83509911 -60276544 - MIR SINE MIR -76 186 74 21 0 0 0 chr12 83510738 83510759 -60275696 + AT_rich Low_complexity Low_complexity 1 21 0 182 360 43 25 chr12 83510780 83510941 -60275514 - MIR SINE MIR -98 164 1 331 150 67 0 chr12 83511942 83512002 -60274453 - L2 LINE L2 -6 3307 3244 286 333 44 7 chr12 83512699 83512834 -60273621 - MIR SINE MIR -2 260 121 336 302 101 25 chr12 83512932 83513091 -60273364 + MIR SINE MIR 80 250 -12 2160 77 17 24 chr12 83513154 83513451 -60273004 - AluSg SINE Alu -15 295 1 21 57 0 0 chr12 83513792 83513827 -60272628 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr12 83514493 83514524 -60271931 + (TG)n Simple_repeat Simple_repeat 2 32 0 273 343 69 0 chr12 83514625 83514727 -60271728 + L2 LINE L2 3196 3304 -9 1147 132 6 0 chr12 83515534 83515708 -60270747 + MSTB1 LTR MaLR 258 432 0 323 294 113 17 chr12 83517125 83517302 -60269153 - L1ME LINE L1 -301 5820 5627 11557 182 74 36 chr12 83517302 83518367 -60268088 + L1MA6 LINE L1 2157 3180 -3120 2034 131 16 45 chr12 83518367 83518742 -60267713 - THE1B LTR MaLR 0 364 1 11557 182 74 36 chr12 83518742 83521666 -60264789 + L1MA6 LINE L1 3180 6300 0 318 345 59 0 chr12 83521748 83521867 -60264588 + L2 LINE L2 3147 3272 0 329 292 52 45 chr12 83522047 83522201 -60264254 + MIR SINE MIR 64 218 -44 321 244 128 28 chr12 83523565 83523745 -60262710 + MER113 DNA MER1_type? 321 518 -3 198 328 0 0 chr12 83524029 83524090 -60262365 - MER5A DNA MER1_type 0 189 129 405 322 39 56 chr12 83524183 83524416 -60262039 + MIR SINE MIR 21 249 -13 1224 156 27 62 chr12 83524559 83524816 -60261639 + MSTB1 LTR MaLR 1 248 -184 38 22 0 0 chr12 83525273 83525318 -60261137 + AT_rich Low_complexity Low_complexity 1 45 0 301 298 18 18 chr12 83525928 83526042 -60260413 + L1ME3A LINE L1 53 166 -5953 375 307 76 80 chr12 83526388 83526863 -60259592 + L1ME3A LINE L1 597 1069 -5050 317 290 89 24 chr12 83526930 83527099 -60259356 + L1ME3A LINE L1 4504 4683 -1446 2041 182 6 0 chr12 83527338 83527700 -60258755 - MLT1A1 LTR MaLR -1 364 1 894 19 0 9 chr12 83528299 83528407 -60258048 - L1PA5 LINE L1 -210 5944 5838 361 96 0 0 chr12 83528407 83528452 -60258003 + L1PA6 LINE L1 6099 6150 -4 24 67 0 0 chr12 83528454 83528499 -60257956 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 83529514 83529536 -60256919 + AT_rich Low_complexity Low_complexity 1 22 0 367 211 13 0 chr12 83529652 83529728 -60256727 + L3 LINE CR1 1494 1570 -7 351 336 57 24 chr12 83529979 83530190 -60256265 + MLT1J2 LTR MaLR 1 218 -232 1653 260 107 22 chr12 83530307 83531064 -60255391 + L1ME3A LINE L1 5302 6122 -31 232 277 121 12 chr12 83531191 83531274 -60255181 + L3b LINE CR1 1489 1580 -3 184 352 32 32 chr12 83531285 83531410 -60255045 - L3 LINE CR1 -433 1144 1020 792 258 38 100 chr12 83533404 83533785 -60252670 + MLT1F1 LTR MaLR 1 365 -202 1387 58 27 5 chr12 83533791 83533979 -60252476 + LTR19A LTR ERV1 1 192 -294 1857 120 18 0 chr12 83534134 83534418 -60252037 + LTR19A LTR ERV1 198 486 0 791 268 36 36 chr12 83534418 83534642 -60251813 + MLT1F1 LTR MaLR 364 587 -6 235 209 90 0 chr12 83534722 83534789 -60251666 + L1MC5 LINE L1 7831 7903 -58 399 319 82 6 chr12 83535230 83535412 -60251043 - MIR SINE MIR -19 243 48 304 298 9 44 chr12 83535738 83535852 -60250603 - MLT1H LTR MaLR -302 247 138 297 320 49 69 chr12 83536134 83536337 -60250118 - L3 LINE CR1 -1369 208 10 180 267 0 89 chr12 83536612 83536702 -60249753 + L2 LINE L2 3170 3251 -62 355 352 146 27 chr12 83537391 83537523 -60248932 - L2 LINE L2 0 3272 3157 2158 120 0 0 chr12 83537523 83537814 -60248641 - AluSx SINE Alu -21 291 1 355 352 146 27 chr12 83537814 83537982 -60248473 - L2 LINE L2 -115 3157 2936 352 263 0 11 chr12 83538242 83538337 -60248118 + LTR67 LTR ERVL 457 550 -7 286 376 53 12 chr12 83538343 83538513 -60247942 - L2 LINE L2 -563 2751 2575 271 312 47 37 chr12 83539243 83539458 -60246997 + L1M4 LINE L1 3349 3565 -2581 1095 183 3 114 chr12 83539489 83539849 -60246606 - L1MA10 LINE L1 -3 6331 6012 7650 22 2 0 chr12 83540205 83541435 -60245020 + L1PA3 LINE L1 4924 6155 0 2234 74 10 3 chr12 83541780 83542076 -60244379 + AluY SINE Alu 1 298 -13 25 31 0 0 chr12 83543153 83543185 -60243270 + AT_rich Low_complexity Low_complexity 1 32 0 2199 70 11 3 chr12 83543440 83543746 -60242709 + AluSp SINE Alu 1 308 0 222 365 0 40 chr12 83543809 83543935 -60242520 - L3 LINE CR1 -2 1575 1455 1635 219 43 18 chr12 83544035 83544428 -60242027 - MER92A LTR ERV1 0 412 10 674 213 0 0 chr12 83544849 83544976 -60241479 + FLAM_C SINE Alu 1 127 -16 330 314 0 17 chr12 83545019 83545137 -60241318 - L1MC4 LINE L1 -1339 6703 6588 646 127 0 14 chr12 83545137 83545279 -60241176 + (TA)n Simple_repeat Simple_repeat 2 141 0 1247 99 77 11 chr12 83545391 83545573 -60240882 - AluSg SINE Alu -114 196 3 1901 97 115 35 chr12 83545573 83545912 -60240543 - MER4E LTR ERV1 -413 366 1 196 286 16 0 chr12 83546162 83546225 -60240230 + L3 LINE CR1 1173 1236 -341 21 36 0 0 chr12 83546453 83546481 -60239974 + AT_rich Low_complexity Low_complexity 1 28 0 1054 277 40 38 chr12 83546578 83547203 -60239252 - L1 LINE L1 -2765 3381 2756 492 253 63 71 chr12 83547539 83547950 -60238505 + L1ME2 LINE L1 2974 3381 -2765 21 36 0 0 chr12 83548047 83548075 -60238380 + AT_rich Low_complexity Low_complexity 1 28 0 196 286 16 0 chr12 83548303 83548366 -60238089 - L3 LINE CR1 -341 1236 1173 1737 100 130 17 chr12 83548616 83548916 -60237539 + MER4E LTR ERV1 1 334 -445 10831 152 17 25 chr12 83598916 83601816 -60184639 - L1P3 LINE L1 -3586 2875 1 355 218 138 53 chr12 83601850 83602038 -60184417 - MLT1E1 LTR MaLR -420 204 1 489 212 128 109 chr12 83602089 83602457 -60183998 + L1ME2 LINE L1 5024 5398 -748 2157 208 21 36 chr12 83602493 83603016 -60183439 + MER34 LTR ERV1 28 542 0 697 266 101 22 chr12 83603052 83603330 -60183125 + L1ME2 LINE L1 5463 5762 -404 1234 263 101 27 chr12 83603332 83603928 -60182527 - MLT1E2 LTR MaLR 0 626 1 923 238 48 30 chr12 83603929 83604231 -60182224 + L1ME2 LINE L1 5764 6073 -91 31 44 0 0 chr12 83604248 83604293 -60182162 + AT_rich Low_complexity Low_complexity 1 45 0 1197 197 16 20 chr12 83604493 83604747 -60181708 + MLT1D LTR MaLR 253 505 0 6399 71 103 5 chr12 83604891 83605824 -60180631 - L1PA7 LINE L1 -13 6141 5190 875 119 0 8 chr12 83606051 83606185 -60180270 - AluSg SINE Alu -8 302 170 383 274 33 0 chr12 83606185 83606293 -60180162 - MLT1E2 LTR MaLR -184 442 336 1144 107 0 0 chr12 83606302 83606451 -60180004 - AluSg SINE Alu -132 178 30 337 299 264 25 chr12 83606523 83606917 -60179538 - L1ME LINE L1 -373 5789 5302 982 273 20 4 chr12 83606918 83607167 -60179288 - MIR SINE MIR -5 257 5 246 257 59 0 chr12 83607339 83607440 -60179015 - L1ME LINE L1 -1042 5104 4998 24 0 0 0 chr12 83607737 83607761 -60178694 + AT_rich Low_complexity Low_complexity 1 24 0 43965 43 1 2 chr12 83607761 83613919 -60172536 - L1PA3 LINE L1 0 6155 2 182 402 12 0 chr12 83616310 83616392 -60170063 - L2 LINE L2 -2 3311 3229 185 347 61 0 chr12 83616528 83616675 -60169780 - MIR SINE MIR -3 259 104 269 341 0 22 chr12 83616760 83616898 -60169557 + MIR SINE MIR 105 239 -23 1451 190 48 3 chr12 83617804 83618094 -60168361 - AluJo SINE Alu -9 303 1 201 133 0 0 chr12 83618232 83618262 -60168193 + (GGA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr12 83619362 83619384 -60167071 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 83619923 83619944 -60166511 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 83620297 83620319 -60166136 + AT_rich Low_complexity Low_complexity 1 22 0 1789 144 38 10 chr12 83620689 83620981 -60165474 - AluSx SINE Alu -9 303 4 239 281 62 0 chr12 83621965 83622029 -60164426 - L2 LINE L2 -4 3268 3201 537 235 17 96 chr12 83622562 83622792 -60163663 - L2 LINE L2 0 3313 3102 405 326 59 90 chr12 83622982 83623491 -60162964 - LTR67 LTR ERVL -63 494 2 205 247 91 52 chr12 83626801 83626878 -60159577 + L2 LINE L2 3182 3261 -11 185 323 16 16 chr12 83627441 83627503 -60158952 + L2 LINE L2 2912 2973 -341 248 278 231 46 chr12 83628534 83628629 -60157826 - MIR SINE MIR -6 256 180 183 80 0 0 chr12 83628629 83628654 -60157801 + (TTA)n Simple_repeat Simple_repeat 2 26 0 248 278 231 46 chr12 83628654 83628774 -60157681 - MIR SINE MIR -82 180 1 * 486 324 25 15 chr12 83628774 83628956 -60157499 - MIR SINE MIR -68 194 12 322 267 6 0 chr12 83629279 83629364 -60157091 + MIR SINE MIR 37 123 -85 191 204 91 0 chr12 83630137 83630181 -60156274 - L2 LINE L2 -559 2755 2708 1004 221 34 37 chr12 83630190 83630484 -60155971 + L1MA10 LINE L1 6040 6332 -2 234 0 0 0 chr12 83630922 83630948 -60155507 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1197 204 126 30 chr12 83631905 83632238 -60154217 - MLT1A1 LTR MaLR 0 365 1 198 358 69 82 chr12 83632997 83633388 -60153067 + L2 LINE L2 2866 3251 -21 235 284 14 14 chr12 83633988 83634062 -60152393 - MLT1J2 LTR MaLR -13 437 364 273 273 15 0 chr12 83634114 83634180 -60152275 - MLT1J1 LTR MaLR -119 327 261 300 275 12 0 chr12 83634181 83634261 -60152194 - MLT1J2 LTR MaLR -332 118 38 237 250 0 0 chr12 83634330 83634390 -60152065 + (TA)n Simple_repeat Simple_repeat 1 60 0 544 235 6 6 chr12 83634932 83635111 -60151344 + (TA)n Simple_repeat Simple_repeat 2 180 0 25 0 0 0 chr12 83635116 83635141 -60151314 + AT_rich Low_complexity Low_complexity 1 25 0 17800 102 18 2 chr12 83636242 83639248 -60147207 - L1P3 LINE L1 -448 5724 2678 185 193 24 24 chr12 83640472 83640555 -60145900 + (TA)n Simple_repeat Simple_repeat 2 84 0 1771 270 68 26 chr12 83641465 83642533 -60143922 - L1M4 LINE L1 -2745 4103 2991 838 312 44 31 chr12 83642632 83643180 -60143275 + L1M1 LINE L1 1897 2451 -5114 3377 245 45 28 chr12 83643187 83644221 -60142234 - L1M4 LINE L1 -4534 2315 1265 315 359 55 27 chr12 83644261 83644517 -60141938 + L1M2 LINE L1 838 1100 -5749 1768 159 0 49 chr12 83645320 83645646 -60140809 - AluSx SINE Alu -2 310 1 6326 39 6 1 chr12 83645667 83646454 -60140001 + L1P LINE L1 3620 4410 -1736 5072 266 58 34 chr12 83646574 83649071 -60137384 + LTR10B-int LTR ERV1 2692 4860 -1789 5614 265 38 23 chr12 83649154 83650782 -60135673 + LTR10B-int LTR ERV1 4996 6646 -3 2754 129 83 17 chr12 83650833 83651304 -60135151 + LTR10B LTR ERV1 4 505 0 2178 133 11 8 chr12 83651531 83651884 -60134571 - THE1A LTR MaLR 0 355 2 11042 105 9 14 chr12 83651885 83653472 -60132983 - THE1A-int LTR MaLR 0 1580 1 1996 119 68 12 chr12 83653472 83653808 -60132647 - THE1A LTR MaLR 0 355 1 332 256 82 123 chr12 83656056 83656325 -60130130 + MIR SINE MIR 2 259 -3 776 200 72 33 chr12 83656424 83656604 -60129851 - AluJo SINE Alu -25 287 101 1953 112 16 43 chr12 83657290 83657595 -60128860 + AluY SINE Alu 1 297 -14 189 107 0 0 chr12 83657976 83658004 -60128451 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chr12 83658299 83658337 -60128118 + AT_rich Low_complexity Low_complexity 1 38 0 412 333 81 15 chr12 83658883 83659156 -60127299 + L2 LINE L2 1917 2207 -1107 2576 135 111 11 chr12 83661689 83662148 -60124307 + LTR10B LTR ERV1 1 505 0 2233 210 51 41 chr12 83662150 83662819 -60123636 + LTR10B-int LTR ERV1 6 702 -5972 323 285 128 52 chr12 83663400 83663572 -60122883 - MIR SINE MIR -59 203 19 21 0 0 0 chr12 83664335 83664356 -60122099 + GC_rich Low_complexity Low_complexity 1 21 0 651 264 50 14 chr12 83665048 83665268 -60121187 - L1M4 LINE L1 -2522 4686 4459 1434 127 59 0 chr12 83665271 83665524 -60120931 + L1MA4 LINE L1 6030 6297 -3 317 256 30 54 chr12 83666115 83666283 -60120172 + MER103 DNA DNA 3 166 0 1871 132 6 44 chr12 83666601 83666919 -60119536 - AluSp SINE Alu -4 309 4 813 222 35 5 chr12 83667155 83667353 -60119102 - MER2 DNA MER2_type -140 205 2 270 343 46 9 chr12 83667669 83667777 -60118678 + MIR SINE MIR 34 145 -117 262 342 0 8 chr12 83668849 83668966 -60117489 - L1M4 LINE L1 -6411 798 683 23 0 0 0 chr12 83669900 83669923 -60116532 + AT_rich Low_complexity Low_complexity 1 23 0 1403 226 25 29 chr12 83670392 83671078 -60115377 + L1P5 LINE L1 4971 5651 -503 1160 314 51 2 chr12 83671455 83671850 -60114605 - L2 LINE L2 -858 2456 2043 181 284 40 0 chr12 83672103 83672177 -60114278 - MIR SINE MIR -108 154 78 293 304 47 52 chr12 83672281 83672472 -60113983 - L1ME3A LINE L1 -18 6152 5963 234 259 17 0 chr12 83672514 83672572 -60113883 - L1ME3A LINE L1 -201 5969 5911 1162 219 47 33 chr12 83672572 83672932 -60113523 + MLT1A1 LTR MaLR 1 365 0 709 290 50 55 chr12 83673025 83673387 -60113068 + MER110 LTR ERV1 104 463 -28 913 313 56 6 chr12 83674033 83674547 -60111908 - L1ME3A LINE L1 -1132 5014 4475 2120 81 0 39 chr12 83674847 83675157 -60111298 + L1PA5 LINE L1 5854 6151 -3 744 285 87 59 chr12 83675228 83675653 -60110802 + L2 LINE L2 2513 2949 -365 504 288 90 24 chr12 83677011 83677189 -60109266 + MIR SINE MIR 31 257 0 182 206 0 0 chr12 83677189 83677223 -60109232 + L2 LINE L2 3228 3261 -11 26 0 0 0 chr12 83677701 83677727 -60108728 + AT_rich Low_complexity Low_complexity 1 26 0 279 299 122 59 chr12 83678299 83678520 -60107935 + L3 LINE CR1 1340 1574 -3 1903 213 129 53 chr12 83679992 83680649 -60105806 + MER39 LTR ERV1 1 707 0 321 343 42 95 chr12 83681001 83681307 -60105148 + L2 LINE L2 2872 3161 -111 241 380 53 19 chr12 83682353 83682561 -60103894 - L2 LINE L2 -811 2503 2289 377 323 39 39 chr12 83682779 83682909 -60103546 + L2 LINE L2 3136 3265 -7 666 215 73 17 chr12 83684144 83684321 -60102134 + MLT1A1 LTR MaLR 179 365 0 213 371 10 0 chr12 83684417 83684514 -60101941 - L2 LINE L2 -1362 1952 1855 24 0 0 0 chr12 83688011 83688035 -60098420 + AT_rich Low_complexity Low_complexity 1 24 0 323 293 118 51 chr12 83689948 83690139 -60096316 + MIR SINE MIR 1 203 -59 681 290 65 20 chr12 83690482 83690730 -60095725 + MIR SINE MIR 4 262 0 942 277 192 13 chr12 83693233 83693619 -60092836 + L2 LINE L2 2859 3313 0 391 281 92 70 chr12 83693737 83693857 -60092598 + MIR SINE MIR 29 145 -117 2100 169 91 9 chr12 83693857 83694230 -60092225 + MLT2C2 LTR ERVL 1 415 -49 444 37 0 0 chr12 83694230 83694284 -60092171 + (TG)n Simple_repeat Simple_repeat 1 54 0 2100 169 91 9 chr12 83694284 83694337 -60092118 + MLT2C2 LTR ERVL 415 462 -2 391 281 92 70 chr12 83694337 83694444 -60092011 + MIR SINE MIR 145 261 -1 186 43 0 0 chr12 83694478 83694501 -60091954 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 27 62 0 0 chr12 83695650 83695698 -60090757 + AT_rich Low_complexity Low_complexity 1 48 0 357 260 5 25 chr12 83696885 83697062 -60089393 + AluSg/x SINE Alu 202 291 -9 7801 206 13 3 chr12 83697098 83699707 -60086748 + L1PA16 LINE L1 3512 6162 -4 234 352 29 9 chr12 83699841 83699946 -60086509 - L3 LINE CR1 -162 1415 1309 185 193 24 24 chr12 83701074 83701157 -60085298 + (TA)n Simple_repeat Simple_repeat 1 83 0 434 117 85 0 chr12 83702339 83702433 -60084022 - MLT2B3 LTR ERVL -451 103 2 23 0 0 0 chr12 83702461 83702484 -60083971 + AT_rich Low_complexity Low_complexity 1 23 0 196 349 0 0 chr12 83702497 83702563 -60083892 - L2 LINE L2 -6 3307 3242 438 257 61 61 chr12 83702700 83702892 -60083563 + MIR SINE MIR 35 225 -37 463 261 140 6 chr12 83702942 83703099 -60083356 - L3 LINE CR1 -156 1421 1244 2791 219 54 38 chr12 83703461 83703486 -60082969 - Charlie1 DNA MER1_type -17 2744 2721 3433 141 22 56 chr12 83703486 83704162 -60082293 - MER39B LTR ERV1 0 653 1 2791 219 54 38 chr12 83704162 83704250 -60082205 - Charlie1 DNA MER1_type -40 2721 2636 2040 120 40 3 chr12 83704250 83704550 -60081905 + AluSx SINE Alu 2 312 0 2791 219 54 38 chr12 83704550 83705325 -60081130 - Charlie1 DNA MER1_type -125 2636 1841 344 314 35 0 chr12 83705333 83705419 -60081036 - Charlie1 DNA MER1_type -2672 89 1 289 270 167 0 chr12 83705802 83705928 -60080527 + MIR SINE MIR 57 203 -59 1873 140 52 55 chr12 83706547 83706912 -60079543 - THE1B LTR MaLR 0 364 1 1156 313 188 19 chr12 83706954 83707699 -60078756 + L2 LINE L2 1443 2313 -1001 567 325 115 36 chr12 83707785 83708219 -60078236 + L2 LINE L2 2758 3217 -96 1927 189 45 60 chr12 83708219 83708733 -60077722 + MER67D LTR ERV1 8 513 -1 210 239 22 0 chr12 83708752 83708798 -60077657 + L2 LINE L2 3223 3269 -3 1513 152 93 40 chr12 83709316 83709459 -60076996 - MER44D DNA MER2_type -1882 609 475 4574 113 18 6 chr12 83709459 83710142 -60076313 + LTR8 LTR ERV1 1 691 0 1513 152 93 40 chr12 83710142 83710320 -60076135 - MER44D DNA MER2_type -2016 475 1 231 114 0 0 chr12 83710737 83710772 -60075683 + (TATG)n Simple_repeat Simple_repeat 2 36 0 208 250 0 0 chr12 83712973 83713017 -60073438 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 242 272 25 0 chr12 83713247 83713328 -60073127 + L1PB4 LINE L1 5211 5293 -853 4768 151 21 6 chr12 83713414 83714240 -60072215 + L1PB4 LINE L1 5318 6155 -1 1974 121 0 23 chr12 83716858 83717165 -60069290 - AluSx SINE Alu -12 300 1 668 264 50 14 chr12 83717621 83717841 -60068614 - L1M4 LINE L1 -2522 4686 4459 1450 126 59 0 chr12 83717844 83718098 -60068357 + L1MA4 LINE L1 6030 6298 -2 2167 262 70 25 chr12 83718244 83719301 -60067154 - L1M4 LINE L1 -2757 4451 3348 1276 296 36 20 chr12 83719396 83719951 -60066504 + L1M1 LINE L1 1897 2460 -5105 * 5243 250 56 90 chr12 83719950 83722095 -60064360 - L1M4 LINE L1 -4535 2674 608 235 276 23 23 chr12 83723095 83723182 -60063273 + L1MC4 LINE L1 6617 6703 -1339 256 250 22 43 chr12 83723198 83723290 -60063165 + L1MC4 LINE L1 6614 6703 -1339 * 260 206 22 65 chr12 83723208 83723300 -60063155 - L1MC4 LINE L1 -1339 6703 6616 248 193 18 0 chr12 83723318 83723375 -60063080 - L1MCa LINE L1 -4363 2063 2006 237 287 23 0 chr12 83723338 83723425 -60063030 + L1MC4 LINE L1 6614 6702 -1340 * 236 301 24 0 chr12 83723453 83723536 -60062919 - L1MC4 LINE L1 -1344 6698 6614 216 246 0 0 chr12 83723541 83723610 -60062845 + (TA)n Simple_repeat Simple_repeat 2 70 0 270 178 44 59 chr12 83723808 83723943 -60062512 + (CATTA)n Simple_repeat Simple_repeat 3 135 0 242 247 0 0 chr12 83724231 83724302 -60062153 + L1ME LINE L1 5755 5824 -297 279 0 0 0 chr12 83724603 83724634 -60061821 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr12 83725034 83725055 -60061400 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 83725966 83725998 -60060457 + AT_rich Low_complexity Low_complexity 1 32 0 3310 306 102 7 chr12 83726397 83727884 -60058571 + L2 LINE L2 1661 3313 0 1946 141 11 0 chr12 83728940 83729255 -60057200 - AluSx SINE Alu 0 318 1 405 352 76 8 chr12 83729366 83729602 -60056853 - MIR SINE MIR -1 261 10 24 32 0 0 chr12 83730005 83730036 -60056419 + AT_rich Low_complexity Low_complexity 1 31 0 265 418 43 0 chr12 83731107 83731248 -60055207 - L2 LINE L2 -20 3252 3106 829 185 92 0 chr12 83731827 83732011 -60054444 - MER3 DNA MER1_type -4 205 5 25 31 0 0 chr12 83733096 83733128 -60053327 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 83733331 83733374 -60053081 + AT_rich Low_complexity Low_complexity 1 43 0 352 344 0 32 chr12 83733478 83733632 -60052823 + MIR SINE MIR 59 207 -55 5864 209 39 14 chr12 83735144 83735176 -60051279 + L1MA4 LINE L1 3479 3509 -2637 1917 112 0 4 chr12 83735176 83735479 -60050976 + AluY SINE Alu 17 318 0 5864 209 39 14 chr12 83735479 83736923 -60049532 + L1MA4 LINE L1 3509 4992 -1154 206 367 6 25 chr12 83739539 83739697 -60046758 + G-rich Low_complexity Low_complexity 1 155 0 405 0 0 0 chr12 83742981 83743026 -60043429 + (TG)n Simple_repeat Simple_repeat 2 46 0 223 258 48 16 chr12 83743070 83743132 -60043323 + L2 LINE L2 3190 3253 -60 4742 152 10 10 chr12 83743171 83744035 -60042420 + L1MA4 LINE L1 5254 6117 -183 11286 80 1 0 chr12 83744039 83745530 -60040925 + L1P LINE L1 4 1495 -4651 356 44 0 0 chr12 83745527 83745572 -60040883 + L1P LINE L1 3409 3453 -2693 * 1622 52 5 0 chr12 83745563 83745774 -60040681 - L1P LINE L1 -875 5271 5060 2425 31 0 3 chr12 83745774 83746064 -60040391 + L1PA4 LINE L1 5858 6149 -6 534 341 140 21 chr12 83746394 83747001 -60039454 - L2 LINE L2 -465 2849 2171 423 274 122 79 chr12 83747389 83747447 -60039008 - MLT1L LTR MaLR 0 615 561 1909 123 18 0 chr12 83747447 83747754 -60038701 + AluSq SINE Alu 1 312 0 423 274 122 79 chr12 83747754 83748088 -60038367 - MLT1L LTR MaLR -54 561 205 2019 135 3 0 chr12 83749366 83749670 -60036785 - AluSq SINE Alu -8 305 1 321 331 70 17 chr12 83751381 83751553 -60034902 - MIR SINE MIR -61 201 21 309 256 158 24 chr12 83752734 83752898 -60033557 - MLT1J1 LTR MaLR -37 409 224 1679 154 28 7 chr12 83752934 83753293 -60033162 + AluJb SINE Alu 6 370 0 351 96 0 0 chr12 83753304 83753356 -60033099 + (GGGA)n Simple_repeat Simple_repeat 3 54 0 209 108 27 0 chr12 83753355 83753392 -60033063 + A-rich Low_complexity Low_complexity 1 38 0 * 563 241 24 47 chr12 83753393 83753563 -60032892 - MLT1J2 LTR MaLR -238 212 47 319 246 85 23 chr12 83753817 83753947 -60032508 + L1ME4a LINE L1 5720 5857 -264 2940 244 28 21 chr12 83753971 83754620 -60031835 - L1ME1 LINE L1 -5 6161 5503 1800 224 14 6 chr12 83754620 83754982 -60031473 - MLT1A1 LTR MaLR 0 365 1 2940 244 28 21 chr12 83754982 83755176 -60031279 - L1ME1 LINE L1 -663 5503 5312 1507 226 50 3 chr12 83755455 83755792 -60030663 - MLT1-int LTR MaLR -662 709 357 1362 184 20 26 chr12 83755796 83756100 -60030355 - L1MA6 LINE L1 -5 6295 5994 1409 139 4 59 chr12 83756102 83756375 -60030080 + L1MA6 LINE L1 5724 5981 -319 225 210 0 32 chr12 83756378 83756440 -60030015 + L2 LINE L2 1638 1697 -1617 428 51 17 0 chr12 83756451 83756510 -60029945 + (GGGGA)n Simple_repeat Simple_repeat 5 64 0 34 0 0 0 chr12 83756533 83756567 -60029888 + AT_rich Low_complexity Low_complexity 1 34 0 2123 113 7 0 chr12 83756598 83756899 -60029556 - AluSp SINE Alu -10 303 1 234 156 0 0 chr12 83756974 83757019 -60029436 - LTR66 LTR ERVL -172 438 394 * 236 156 0 0 chr12 83756981 83757026 -60029429 + LTR66 LTR ERVL 394 438 -172 480 344 23 23 chr12 83757084 83757302 -60029153 + MIR SINE MIR 45 262 0 30 45 0 0 chr12 83757713 83757757 -60028698 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 83757863 83757886 -60028569 + AT_rich Low_complexity Low_complexity 1 23 0 720 251 56 26 chr12 83759378 83759740 -60026715 - MER66A LTR ERV1 -46 432 27 223 185 0 31 chr12 83761331 83761396 -60025059 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 229 274 10 20 chr12 83761398 83761500 -60024955 + L1MC4 LINE L1 6616 6716 -1326 526 66 109 0 chr12 83761537 83761801 -60024654 + (TA)n Simple_repeat Simple_repeat 1 292 0 394 169 84 0 chr12 83761806 83761877 -60024578 - MLT2C2 LTR ERVL -48 416 340 476 246 145 0 chr12 83761881 83762019 -60024436 - MLT2D LTR ERVL -256 158 1 836 304 114 22 chr12 83762227 83762725 -60023730 - L2 LINE L2 -12 3301 2756 180 286 0 0 chr12 83763059 83763115 -60023340 - MIR SINE MIR -56 206 151 1071 254 0 0 chr12 83764190 83764414 -60022041 - MER58A DNA MER1_type 0 224 1 24 67 0 0 chr12 83765465 83765510 -60020945 + AT_rich Low_complexity Low_complexity 1 45 0 1342 306 81 41 chr12 83765691 83766615 -60019840 + L1MEd LINE L1 81 1041 -5078 914 223 13 31 chr12 83766950 83767179 -60019276 + AluJo SINE Alu 11 235 -77 21 36 0 0 chr12 83767417 83767445 -60019010 + AT_rich Low_complexity Low_complexity 1 28 0 230 342 143 21 chr12 83767775 83768012 -60018443 + L1MC/D LINE L1 5374 5639 -2169 630 174 21 6 chr12 83768094 83768335 -60018120 + AluJ SINE Alu 1 294 -18 195 294 167 39 chr12 83769482 83769584 -60016871 - L2 LINE L2 -280 3033 2919 316 269 0 0 chr12 83769594 83769698 -60016757 - MER103 DNA DNA -52 114 11 183 242 0 0 chr12 83771497 83771559 -60014896 + (CATA)n Simple_repeat Simple_repeat 4 65 0 749 260 16 5 chr12 83771705 83771897 -60014558 + MER58A DNA MER1_type 31 224 0 24 77 0 0 chr12 83772622 83772674 -60013781 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 83773343 83773365 -60013090 + AT_rich Low_complexity Low_complexity 1 22 0 240 122 0 0 chr12 83773706 83773747 -60012708 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 276 111 0 0 chr12 83775182 83775227 -60011228 + (CA)n Simple_repeat Simple_repeat 2 46 0 397 267 85 18 chr12 83776827 83776992 -60009463 + MIR SINE MIR 50 225 -37 245 280 68 53 chr12 83777149 83777281 -60009174 + L2 LINE L2 3002 3135 -178 335 142 78 130 chr12 83777768 83777926 -60008529 - MLT1J1 LTR MaLR -298 152 1 24 53 0 0 chr12 83778034 83778072 -60008383 + AT_rich Low_complexity Low_complexity 1 38 0 246 370 52 13 chr12 83778099 83778253 -60008202 + L3 LINE CR1 185 344 -1233 1974 149 7 0 chr12 83778422 83778723 -60007732 + AluSx SINE Alu 1 303 -9 450 189 22 0 chr12 83778633 83778723 -60007732 + AluSg/x SINE Alu 212 339 0 187 167 0 0 chr12 83778723 83778759 -60007696 + GA-rich Low_complexity Low_complexity 1 180 0 190 296 37 0 chr12 83778764 83778818 -60007637 + L3 LINE CR1 900 955 -622 1968 129 6 16 chr12 83778829 83779140 -60007315 + AluSg SINE Alu 1 308 -2 309 390 19 6 chr12 83779458 83779617 -60006838 + L2 LINE L2 2601 2761 -553 292 301 32 97 chr12 83779716 83779932 -60006523 - MER112 DNA MER1_type -32 228 27 461 313 185 0 chr12 83779965 83780176 -60006279 + MIR SINE MIR 9 258 -4 2192 107 65 6 chr12 83780219 83780557 -60005898 + THE1B LTR MaLR 1 358 -6 253 341 32 16 chr12 83780685 83780808 -60005647 - MIR SINE MIR -65 143 19 236 230 30 60 chr12 83781169 83781269 -60005186 - MER103 DNA DNA -11 155 59 256 67 67 44 chr12 83781742 83781787 -60004668 - MLT1J2 LTR MaLR -44 406 361 1910 164 18 42 chr12 83782595 83782979 -60003476 - THE1C LTR MaLR 0 375 1 482 89 13 51 chr12 83782981 83783060 -60003395 - THE1C LTR MaLR -299 76 1 7466 91 5 23 chr12 83783835 83784881 -60001574 + MER11C LTR ERVK 1 1065 -6 270 0 0 0 chr12 83784881 83784911 -60001544 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5859 11 0 0 chr12 83784914 83785569 -60000886 - L1PA2 LINE L1 -13 6142 5488 7466 91 5 23 chr12 83785569 83785595 -60000860 + MER11C LTR ERVK 1032 1057 -14 1450 195 11 0 chr12 83786473 83786584 -59999871 + AluSx SINE Alu 11 119 -193 194 0 39 0 chr12 83786584 83786610 -59999845 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1450 195 11 0 chr12 83786610 83786759 -59999696 + AluSx SINE Alu 119 274 -38 363 23 0 0 chr12 83786760 83786804 -59999651 + (TC)n Simple_repeat Simple_repeat 2 45 0 * 390 91 0 0 chr12 83786803 83786858 -59999597 + (TG)n Simple_repeat Simple_repeat 2 56 0 255 269 124 41 chr12 83786914 83787059 -59999396 - MER67D LTR ERV1 0 514 358 350 284 111 12 chr12 83787110 83787272 -59999183 - L1MC4a LINE L1 -1651 6157 5980 284 76 8 76 chr12 83787285 83787403 -59999052 + (TA)n Simple_repeat Simple_repeat 2 111 0 1596 154 84 45 chr12 83787403 83787761 -59998694 - MER67D LTR ERV1 -129 385 14 501 229 13 51 chr12 83787786 83787943 -59998512 - MER97a DNA MER1_type? -743 151 1 2165 108 3 40 chr12 83788093 83788416 -59998039 + AluSx SINE Alu 1 311 -1 2473 62 0 3 chr12 83788482 83788787 -59997668 + AluY SINE Alu 1 304 -7 4022 125 35 5 chr12 83788869 83789503 -59996952 + MER39B LTR ERV1 1 653 0 348 289 114 44 chr12 83789577 83789850 -59996605 + L1ME3A LINE L1 1243 1534 -4892 29 60 0 0 chr12 83790056 83790106 -59996349 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr12 83790164 83790207 -59996248 + AT_rich Low_complexity Low_complexity 1 43 0 346 272 104 55 chr12 83790597 83791012 -59995443 + L1ME3A LINE L1 4693 5127 -1299 403 299 73 63 chr12 83791558 83791819 -59994636 + L1ME3A LINE L1 5733 6001 -449 1663 186 14 20 chr12 83791819 83792115 -59994340 + AluJb SINE Alu 1 294 -18 403 299 73 63 chr12 83792115 83792294 -59994161 + L1ME3A LINE L1 6001 6177 -273 1305 230 163 7 chr12 83792477 83792651 -59993804 + MLT1C LTR MaLR 1 147 -320 180 77 0 0 chr12 83792651 83792677 -59993778 + (CA)n Simple_repeat Simple_repeat 2 27 0 1305 230 163 7 chr12 83792677 83792906 -59993549 + MLT1C LTR MaLR 147 467 0 23 33 0 0 chr12 83793512 83793542 -59992913 + AT_rich Low_complexity Low_complexity 1 30 0 233 250 0 62 chr12 83793752 83793848 -59992607 - L1MC4 LINE L1 -1339 6703 6614 233 203 0 17 chr12 83793842 83793901 -59992554 + L1MCa LINE L1 2007 2064 -4362 * 249 190 0 100 chr12 83793888 83793988 -59992467 + L1MC4 LINE L1 6614 6703 -1339 322 206 31 0 chr12 83793999 83794096 -59992359 + (TATG)n Simple_repeat Simple_repeat 3 102 0 398 307 152 0 chr12 83794143 83794439 -59992016 + L1ME4a LINE L1 5528 5868 -253 368 310 58 13 chr12 83794853 83795008 -59991447 + L2 LINE L2 2595 2756 -558 387 219 20 113 chr12 83795019 83795170 -59991285 + MER5B DNA MER1_type 1 137 -41 243 277 48 24 chr12 83795356 83795439 -59991016 + L2 LINE L2 2994 3078 -194 339 304 27 20 chr12 83795598 83795746 -59990709 + L2 LINE L2 3161 3309 -4 272 277 226 7 chr12 83795899 83796054 -59990401 + MIR SINE MIR 68 256 -6 221 263 73 80 chr12 83796064 83796201 -59990254 + L2 LINE L2 3156 3291 -22 2251 108 0 3 chr12 83796248 83796554 -59989901 - AluSg SINE Alu -5 305 1 206 335 30 79 chr12 83796685 83796849 -59989606 - L2 LINE L2 -445 2869 2714 180 0 0 0 chr12 83797375 83797395 -59989060 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 213 152 43 0 chr12 83800511 83800557 -59985898 + CT-rich Low_complexity Low_complexity 1 48 0 1347 187 99 0 chr12 83800908 83801181 -59985274 - L1M1 LINE L1 -6384 1181 882 653 188 80 36 chr12 83801164 83801453 -59985002 - L1M1 LINE L1 -6895 670 221 * 5951 162 43 2 chr12 83801455 83802479 -59983976 - Tigger1 DNA MER2_type -1352 1066 1 216 297 136 42 chr12 83802479 83802715 -59983740 - L2 LINE L2 -47 3266 3009 197 377 94 6 chr12 83803090 83803249 -59983206 + L2 LINE L2 2660 2832 -482 510 281 88 0 chr12 83803659 83803819 -59982636 + FAM SINE Alu 1 174 -1 375 277 160 14 chr12 83804021 83804234 -59982221 + L2 LINE L2 3070 3313 0 888 215 0 0 chr12 83804273 83804436 -59982019 - AluJb SINE Alu -14 298 136 263 339 94 40 chr12 83804985 83805262 -59981193 + L2 LINE L2 2325 2616 -698 228 269 0 0 chr12 83805993 83806045 -59980410 + L2 LINE L2 3203 3254 -18 212 339 18 54 chr12 83806081 83806193 -59980262 + MIR SINE MIR 1 108 -154 825 195 48 102 chr12 83806197 83806368 -59980087 - L1MC5 LINE L1 -30 7931 7752 2102 127 0 0 chr12 83806368 83806660 -59979795 - AluSx SINE Alu -20 292 1 825 195 48 102 chr12 83806660 83806966 -59979489 - L1MC5 LINE L1 -209 7752 7480 585 264 157 0 chr12 83807006 83807165 -59979290 - MER5A DNA MER1_type -2 187 4 256 258 0 22 chr12 83807169 83807258 -59979197 - L1MC5 LINE L1 -526 7435 7349 278 278 14 0 chr12 83807274 83807346 -59979109 + MER5B DNA MER1_type 2 74 -104 329 209 33 11 chr12 83807346 83807437 -59979018 - L1MC5 LINE L1 -889 7072 6980 261 98 0 0 chr12 83807603 83807644 -59978811 + (T)n Simple_repeat Simple_repeat 1 41 0 341 270 70 7 chr12 83808808 83808959 -59977496 - MIR SINE MIR -64 144 31 1971 100 0 11 chr12 83809283 83809553 -59976902 + AluSg SINE Alu 44 310 0 206 221 65 0 chr12 83811548 83811625 -59974830 + A-rich Low_complexity Low_complexity 1 82 0 1640 121 0 4 chr12 83812890 83813122 -59973333 + AluSg/x SINE Alu 82 312 0 1838 160 16 0 chr12 83813262 83813574 -59972881 - Tigger1 DNA MER2_type -2101 317 1 502 299 113 47 chr12 83813726 83814197 -59972258 + L1ME4a LINE L1 5616 6117 -4 426 114 0 0 chr12 83814474 83814544 -59971911 + (CAT)n Simple_repeat Simple_repeat 1 70 0 2213 113 0 0 chr12 83814750 83815043 -59971412 + AluSx SINE Alu 1 293 -19 269 316 95 54 chr12 83816818 83816986 -59969469 + MIR3 SINE MIR 20 194 -14 932 344 124 10 chr12 83817657 83818271 -59968184 - L2 LINE L2 -672 2642 1959 301 270 43 0 chr12 83818334 83818449 -59968006 - L1ME4a LINE L1 -45 6076 5957 21 0 0 0 chr12 83818621 83818642 -59967813 + AT_rich Low_complexity Low_complexity 1 21 0 722 299 32 5 chr12 83818704 83818921 -59967534 - MIR SINE MIR -38 224 2 276 286 53 42 chr12 83818989 83819178 -59967277 - L2 LINE L2 -411 2903 2713 302 196 22 145 chr12 83820830 83820968 -59965487 + MIR SINE MIR 47 167 -95 748 188 0 0 chr12 83820991 83821119 -59965336 - AluJo SINE Alu -131 181 54 23 0 0 0 chr12 83821230 83821253 -59965202 + AT_rich Low_complexity Low_complexity 1 23 0 885 198 25 0 chr12 83821334 83821496 -59964959 + FRAM SINE Alu 1 164 -12 1879 166 0 6 chr12 83821593 83821907 -59964548 - AluSx SINE Alu 0 312 1 926 211 115 10 chr12 83822267 83822476 -59963979 - MLT1A1 LTR MaLR 0 365 135 1642 142 163 39 chr12 83822484 83822871 -59963584 + LTR23 LTR ERV1 3 437 0 2137 104 7 7 chr12 83822934 83823232 -59963223 - AluSq SINE Alu -15 298 1 2684 201 25 52 chr12 83824082 83824174 -59962281 + LTR23-int LTR ERV1 1670 1763 -4568 5209 81 12 0 chr12 83824174 83824857 -59961598 + LTR8 LTR ERV1 1 691 0 2684 201 25 52 chr12 83824857 83824906 -59961549 + LTR23-int LTR ERV1 1763 1812 -4519 1900 151 0 16 chr12 83824906 83825210 -59961245 - AluSq SINE Alu -14 299 1 2684 201 25 52 chr12 83825210 83825708 -59960747 + LTR23-int LTR ERV1 1812 2293 -4038 697 213 0 0 chr12 83825715 83825851 -59960604 + LTR23-int LTR ERV1 854 989 -4134 369 136 17 0 chr12 83825851 83825910 -59960545 + MER34C LTR ERV1 157 216 -369 915 127 0 0 chr12 83825945 83826071 -59960384 - FLAM_C SINE Alu -11 132 7 284 224 40 13 chr12 83826083 83826159 -59960296 + MER34C LTR ERV1 253 330 -255 5063 188 93 72 chr12 83826162 83826771 -59959684 + LTR23-int LTR ERV1 1135 1729 -4464 2321 94 0 13 chr12 83826771 83827080 -59959375 + AluSx SINE Alu 1 305 -7 5063 188 93 72 chr12 83827080 83827208 -59959247 + LTR23-int LTR ERV1 1729 1853 -4340 2086 136 0 7 chr12 83827208 83827509 -59958946 + AluSx SINE Alu 1 299 -13 5063 188 93 72 chr12 83827509 83828015 -59958440 + LTR23-int LTR ERV1 1853 2346 -3847 2066 137 0 10 chr12 83828015 83828328 -59958127 - AluSg SINE Alu 0 310 1 5063 188 93 72 chr12 83828328 83830226 -59956229 + LTR23-int LTR ERV1 2346 5668 -525 586 193 9 0 chr12 83830235 83830344 -59956111 + LTR23-int LTR ERV1 4791 4900 -223 704 217 7 12 chr12 83830446 83830464 -59955991 - MLT1A1 LTR MaLR -227 138 121 2201 151 47 16 chr12 83830464 83830888 -59955567 + LTR23 LTR ERV1 1 437 0 704 217 7 12 chr12 83830888 83831025 -59955430 - MLT1A1 LTR MaLR -244 121 1 431 362 115 36 chr12 83831114 83831835 -59954620 + L2 LINE L2 2005 2782 -532 829 251 0 0 chr12 83832471 83832638 -59953817 + Tigger7 DNA MER2_type 3 169 -536 991 236 109 10 chr12 83832639 83832932 -59953523 + MER2 DNA MER2_type 23 344 -1 * 1448 144 66 12 chr12 83832932 83833176 -59953279 + Tigger7 DNA MER2_type 2231 2488 -99 1918 148 24 0 chr12 83833188 83833486 -59952969 - AluSx SINE Alu -7 305 1 6873 130 47 9 chr12 83833496 83834673 -59951782 - Tigger3b DNA MER2_type -9 1222 2 587 188 10 0 chr12 83834675 83834776 -59951679 + Tigger7 DNA MER2_type 2385 2486 -1 2569 236 89 31 chr12 83834778 83836212 -59950243 - L1ME2 LINE L1 -28 6136 4621 798 154 12 12 chr12 83836225 83836394 -59950061 + GA-rich Low_complexity Low_complexity 5 173 0 417 219 165 6 chr12 83836426 83836590 -59949865 - L1ME2 LINE L1 -1541 4605 4416 707 175 26 0 chr12 83836607 83836721 -59949734 - FLAM_C SINE Alu -26 117 1 1025 279 43 37 chr12 83836730 83837246 -59949209 - L1ME2 LINE L1 -1745 4401 3883 * 1438 292 23 4 chr12 83837241 83837769 -59948686 - L1ME2 LINE L1 -2579 3567 3030 26 0 0 0 chr12 83837912 83837938 -59948517 + AT_rich Low_complexity Low_complexity 1 26 0 1631 119 79 4 chr12 83837994 83838247 -59948208 + AluSg SINE Alu 6 277 -33 446 45 0 15 chr12 83838247 83838313 -59948142 + (CAAAC)n Simple_repeat Simple_repeat 5 69 0 2143 101 10 0 chr12 83838916 83839222 -59947233 - AluSx SINE Alu -3 309 1 23 0 0 0 chr12 83840575 83840598 -59945857 + AT_rich Low_complexity Low_complexity 1 23 0 655 261 80 28 chr12 83841160 83841409 -59945046 - MIR SINE MIR 0 262 1 1246 261 38 32 chr12 83841630 83842002 -59944453 - MLT1A2 LTR MaLR 0 374 1 1051 280 138 17 chr12 83842002 83842589 -59943866 - L2 LINE L2 -41 3272 2621 1267 219 52 145 chr12 83843949 83844507 -59941948 - MER67C LTR ERV1 -7 507 2 205 416 13 7 chr12 83845158 83845312 -59941143 - L2 LINE L2 -576 2738 2584 23 33 0 0 chr12 83845392 83845422 -59941033 + AT_rich Low_complexity Low_complexity 1 30 0 2559 151 12 21 chr12 83846142 83846574 -59939881 + MSTA LTR MaLR 1 428 0 1072 203 45 18 chr12 83846946 83847284 -59939171 - MLT1B LTR MaLR -14 376 7 1632 218 46 0 chr12 83847296 83847663 -59938792 - MLT1B-int LTR MaLR -11 1724 1341 305 337 0 0 chr12 83847825 83847926 -59938529 - MLT1B-int LTR MaLR -956 779 679 2206 211 24 9 chr12 83847986 83848647 -59937808 - MLT1-int LTR MaLR -487 884 1 1030 214 29 98 chr12 83848647 83848993 -59937462 - MLT2D LTR ERVL 0 414 93 495 238 9 12 chr12 83849015 83849168 -59937287 + L1MA10 LINE L1 6163 6330 0 23 54 0 0 chr12 83850879 83850916 -59935539 + AT_rich Low_complexity Low_complexity 1 37 0 364 232 0 0 chr12 83851026 83851095 -59935360 - LTR40b LTR ERVL 0 462 394 450 245 22 0 chr12 83851103 83851242 -59935213 + L1M4 LINE L1 3599 3740 -2406 473 263 53 0 chr12 83851246 83851360 -59935095 + MER5A DNA MER1_type 1 120 -69 1163 249 47 57 chr12 83851372 83851757 -59934698 - LTR40b LTR ERVL -78 384 4 2601 52 0 0 chr12 83854077 83854387 -59932068 + AluY SINE Alu 1 310 -1 792 133 12 67 chr12 83854403 83854568 -59931887 - L1PB4 LINE L1 -1 6155 6000 201 288 15 15 chr12 83854568 83854589 -59931866 + MIR3 SINE MIR 135 155 -53 510 114 13 0 chr12 83854589 83854668 -59931787 + MADE1 DNA Mariner 1 80 0 201 288 15 15 chr12 83854668 83854712 -59931743 + MIR3 SINE MIR 154 200 -8 275 294 29 29 chr12 83856047 83856093 -59930362 + MIR SINE MIR 161 206 -56 1571 200 75 0 chr12 83856093 83856413 -59930042 - MER2 DNA MER2_type 0 344 1 275 294 29 29 chr12 83856413 83856468 -59929987 + MIR SINE MIR 205 262 0 315 318 131 0 chr12 83856781 83856926 -59929529 - MIR3 SINE MIR -41 167 5 444 314 57 45 chr12 83858569 83858814 -59927641 + MIR SINE MIR 15 262 0 203 329 38 13 chr12 83859260 83859339 -59927116 - MIR SINE MIR -65 143 63 2193 95 0 17 chr12 83859460 83859756 -59926699 - AluSc SINE Alu -13 296 6 2016 133 0 3 chr12 83860237 83860548 -59925907 - AluSx SINE Alu 0 310 1 216 0 0 0 chr12 83860704 83860728 -59925727 + (CTTTG)n Simple_repeat Simple_repeat 2 25 0 450 343 22 0 chr12 83862485 83862622 -59923833 + MIR3 SINE MIR 42 181 -27 928 162 56 20 chr12 83862685 83862883 -59923572 + LTR50 LTR ERVL 15 219 -576 220 330 48 39 chr12 83863082 83863185 -59923270 + L2 LINE L2 3206 3309 -4 * 267 304 32 56 chr12 83863167 83863292 -59923163 + MIR SINE MIR 10 131 -131 986 183 12 0 chr12 83863369 83863538 -59922917 - AluJb SINE Alu -8 304 134 250 349 12 0 chr12 83863543 83863626 -59922829 + L2 LINE L2 3188 3271 -1 23 33 0 0 chr12 83863637 83863667 -59922788 + AT_rich Low_complexity Low_complexity 1 30 0 570 277 117 15 chr12 83863969 83864175 -59922280 + MIR SINE MIR 36 262 0 25 0 0 0 chr12 83864335 83864360 -59922095 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 83864453 83864476 -59921979 + AT_rich Low_complexity Low_complexity 1 23 0 2054 130 3 16 chr12 83865207 83865522 -59920933 - AluSq SINE Alu 0 313 3 563 222 56 7 chr12 83865800 83865944 -59920511 + MIR SINE MIR 112 262 0 1717 169 30 14 chr12 83866070 83866366 -59920089 + AluJo SINE Alu 3 303 -9 503 291 8 0 chr12 83866480 83866614 -59919841 + MER69 DNA AcHobo 436 570 -656 * 884 231 72 60 chr12 83866610 83866713 -59919742 + MER69 DNA AcHobo 2011 2111 -415 200 35 35 0 chr12 83866713 83866742 -59919713 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1829 143 4 0 chr12 83866747 83867019 -59919436 - AluSx SINE Alu -37 275 3 884 231 72 60 chr12 83867019 83867355 -59919100 + MER69 DNA AcHobo 2114 2461 -65 281 205 217 0 chr12 83867450 83867533 -59918922 - MIR SINE MIR -105 157 57 21 57 0 0 chr12 83867630 83867665 -59918790 + AT_rich Low_complexity Low_complexity 1 35 0 1796 143 40 43 chr12 83868181 83868553 -59917902 + THE1C LTR MaLR 5 375 0 379 309 35 40 chr12 83868814 83869015 -59917440 - L2 LINE L2 0 3313 3114 372 371 62 25 chr12 83869147 83869422 -59917033 - L2 LINE L2 -636 2678 2394 187 287 35 35 chr12 83870330 83870417 -59916038 - MIR SINE MIR -69 139 53 230 284 186 0 chr12 83870548 83870650 -59915805 - MIR SINE MIR -107 155 35 31 44 0 0 chr12 83870808 83870853 -59915602 + AT_rich Low_complexity Low_complexity 1 45 0 301 281 85 7 chr12 83871456 83871594 -59914861 - MIR SINE MIR -45 217 67 2185 118 3 0 chr12 83873098 83873395 -59913060 - AluSg SINE Alu -11 299 2 325 309 151 62 chr12 83873583 83873712 -59912743 + L1M4 LINE L1 3595 3711 -2435 2096 121 3 13 chr12 83873712 83874018 -59912437 + AluSx SINE Alu 2 304 -8 325 309 151 62 chr12 83874018 83874324 -59912131 + L1M4 LINE L1 3711 3988 -2158 460 234 117 5 chr12 83874324 83874512 -59911943 + MER3 DNA MER1_type 1 209 0 325 309 151 62 chr12 83874512 83874742 -59911713 + L1M4 LINE L1 3988 4321 -1825 205 294 109 36 chr12 83874913 83875077 -59911378 - L2 LINE L2 -8 3305 3149 292 305 67 9 chr12 83875211 83875316 -59911139 + L2 LINE L2 3187 3297 -16 608 145 8 0 chr12 83875323 83875440 -59911015 + GA-rich Low_complexity Low_complexity 2 119 0 21 57 0 0 chr12 83875741 83875776 -59910679 + AT_rich Low_complexity Low_complexity 1 35 0 211 335 214 24 chr12 83875953 83876159 -59910296 + MIR SINE MIR 6 250 -12 402 286 30 91 chr12 83877394 83877593 -59908862 - MER5A DNA MER1_type 0 189 3 23 33 0 0 chr12 83877716 83877746 -59908709 + AT_rich Low_complexity Low_complexity 1 30 0 208 169 51 34 chr12 83877750 83877809 -59908646 + A-rich Low_complexity Low_complexity 5 64 0 23 0 0 0 chr12 83877815 83877838 -59908617 + AT_rich Low_complexity Low_complexity 1 23 0 228 101 38 38 chr12 83877864 83877943 -59908512 + (TA)n Simple_repeat Simple_repeat 2 80 0 1139 269 63 25 chr12 83878122 83878519 -59907936 + L1MCb LINE L1 1 412 -5633 * 2088 243 180 38 chr12 83878501 83878760 -59907695 + L1MCb LINE L1 1310 1531 -5033 3755 174 54 14 chr12 83878760 83879576 -59906879 - L1MA8 LINE L1 -1 6290 5442 2088 243 180 38 chr12 83879576 83880730 -59905725 + L1MCb LINE L1 1531 2922 -3642 2183 105 0 13 chr12 83880769 83881073 -59905382 - AluSc SINE Alu -9 300 1 5872 225 26 49 chr12 83881078 83883086 -59903369 + L1MC3 LINE L1 31 1974 -4672 1347 190 25 3 chr12 83883090 83883374 -59903081 + L1MB7 LINE L1 5694 5983 -201 7030 97 31 5 chr12 83883389 83884561 -59901894 + L1MA3 LINE L1 5104 6305 0 2508 285 131 13 chr12 83884576 83886701 -59899754 + L1MC3 LINE L1 3212 5630 -1014 1001 268 157 25 chr12 83886929 83887370 -59899085 + MLT1D LTR MaLR 7 505 0 707 240 13 2 chr12 83887370 83887575 -59898880 + L1MC3 LINE L1 5678 5882 -780 23 54 0 0 chr12 83887587 83887624 -59898831 + AT_rich Low_complexity Low_complexity 1 37 0 5706 203 26 21 chr12 83887629 83887703 -59898752 + L1MC3 LINE L1 5859 5931 -2352 1864 117 40 0 chr12 83887703 83888023 -59898432 + AluSx SINE Alu 1 331 0 5706 203 26 21 chr12 83888023 83889255 -59897200 + L1MC3 LINE L1 5931 7172 -1111 202 340 134 0 chr12 83889423 83889520 -59896935 - L2 LINE L2 0 3313 3204 22 88 0 0 chr12 83889564 83889621 -59896834 + AT_rich Low_complexity Low_complexity 1 57 0 201 368 59 15 chr12 83890193 83890329 -59896126 - L2 LINE L2 -455 2859 2718 21 57 0 0 chr12 83890965 83891000 -59895455 + AT_rich Low_complexity Low_complexity 1 35 0 3441 65 2 0 chr12 83891266 83891714 -59894741 + L1PA7 LINE L1 5705 6153 -1 210 208 146 0 chr12 83891887 83891935 -59894520 + MER5A DNA MER1_type 132 186 -3 612 251 63 6 chr12 83892148 83892323 -59894132 + MIR SINE MIR 75 259 -3 313 151 19 35 chr12 83892611 83892701 -59893754 - MLT1G LTR MaLR 0 590 457 585 144 30 12 chr12 83892773 83892905 -59893550 + L1PB4 LINE L1 5355 5489 -667 1178 166 3 114 chr12 83892906 83893195 -59893260 + AluJo SINE Alu 39 295 -17 3413 173 7 22 chr12 83893196 83893886 -59892569 + L1PB4 LINE L1 5477 6156 0 1909 194 74 6 chr12 83893894 83894117 -59892338 - L1MC3 LINE L1 -15 7770 7563 555 43 0 0 chr12 83894117 83894187 -59892268 + (CATTA)n Simple_repeat Simple_repeat 5 74 0 1296 253 64 11 chr12 83894188 83894564 -59891891 - MSTD LTR MaLR 0 396 1 1909 194 74 6 chr12 83894564 83894812 -59891643 - L1MC3 LINE L1 -221 7564 7265 1432 226 51 69 chr12 83894816 83894980 -59891475 - MLT1D LTR MaLR 0 505 340 2047 145 69 0 chr12 83894980 83895312 -59891143 - LTR18A LTR ERVL -2 355 1 1432 226 51 69 chr12 83895312 83895657 -59890798 - MLT1D LTR MaLR -165 340 5 4149 218 50 35 chr12 83895662 83896441 -59890014 - L1MC3 LINE L1 -523 7262 6496 1425 171 97 31 chr12 83896441 83896793 -59889662 - THE1C LTR MaLR 0 375 1 4149 218 50 35 chr12 83896793 83896912 -59889543 - L1MC3 LINE L1 -1289 6496 6380 1834 137 74 0 chr12 83896912 83897197 -59889258 - AluSx SINE Alu -6 306 1 4149 218 50 35 chr12 83897197 83897406 -59889049 - L1MC3 LINE L1 -1405 6380 6138 7610 24 15 0 chr12 83897416 83898431 -59888024 - L1PA3 LINE L1 -3 6152 5134 1809 10 0 0 chr12 83898431 83898638 -59887817 + L1PA3 LINE L1 4912 5118 -1028 * 3153 229 24 8 chr12 83898637 83899380 -59887075 - L1MC3 LINE L1 -1638 6147 5393 673 271 37 14 chr12 83899450 83899668 -59886787 - MER58A DNA MER1_type 0 224 2 28 48 0 0 chr12 83899871 83899913 -59886542 + AT_rich Low_complexity Low_complexity 1 42 0 193 357 64 70 chr12 83899987 83900144 -59886311 + L2 LINE L2 3078 3233 -39 23 0 0 0 chr12 83900144 83900167 -59886288 + AT_rich Low_complexity Low_complexity 1 23 0 234 207 0 0 chr12 83900167 83900225 -59886230 + (TA)n Simple_repeat Simple_repeat 2 59 0 358 191 128 0 chr12 83900230 83900324 -59886131 - Tigger5 DNA MER2_type -3 2320 2215 202 244 0 0 chr12 83900439 83900484 -59885971 + (TA)n Simple_repeat Simple_repeat 2 46 0 311 261 9 17 chr12 83900749 83900864 -59885591 - L1ME LINE L1 -298 5823 5710 252 250 0 0 chr12 83901026 83901082 -59885373 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 560 280 64 68 chr12 83902082 83902505 -59883950 - L1ME2 LINE L1 0 6162 5738 1974 120 0 0 chr12 83902513 83902802 -59883653 - AluSx SINE Alu 0 309 21 317 303 8 17 chr12 83902834 83902953 -59883502 - L1ME2 LINE L1 -572 5592 5475 756 241 123 5 chr12 83902957 83903152 -59883303 - L1MB5 LINE L1 -7 6167 5950 361 267 55 14 chr12 83903155 83903301 -59883154 - L1ME2 LINE L1 -671 5491 5340 3112 144 43 6 chr12 83903349 83903857 -59882598 + MER1A DNA MER1_type 1 527 0 551 214 104 16 chr12 83903857 83904049 -59882406 - L1ME2 LINE L1 -902 5244 5036 5092 154 33 26 chr12 83904089 83905821 -59880634 + L1MA8 LINE L1 4543 6279 -12 774 259 86 115 chr12 83905829 83907113 -59879342 - L1MDa LINE L1 -4408 2132 1012 386 362 45 22 chr12 83907341 83907653 -59878802 - L1MDa LINE L1 -5942 779 461 21 0 0 0 chr12 83908232 83908253 -59878202 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 83908775 83908799 -59877656 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 318 320 153 32 chr12 83909518 83909961 -59876494 - L1M4 LINE L1 -2261 3885 3389 1560 212 0 13 chr12 83911090 83911396 -59875059 - AluJb SINE Alu -10 302 1 535 252 8 8 chr12 83911418 83911541 -59874914 - L2 LINE L2 0 3313 3191 481 358 176 5 chr12 83911828 83912225 -59874230 - L2 LINE L2 -9 3304 2840 1456 63 15 24 chr12 83912767 83912973 -59873482 + L1PA5 LINE L1 5936 6139 -15 323 172 22 33 chr12 83912973 83913153 -59873302 + (TA)n Simple_repeat Simple_repeat 1 178 0 236 146 0 0 chr12 83913164 83913212 -59873243 + LTR66 LTR ERVL 392 439 -171 234 91 0 0 chr12 83913212 83913245 -59873210 + (TA)n Simple_repeat Simple_repeat 1 33 0 33 25 0 0 chr12 83913832 83913872 -59872583 + AT_rich Low_complexity Low_complexity 1 40 0 331 329 101 13 chr12 83914066 83914215 -59872240 - HAL1b LINE L1 -787 561 400 374 266 33 32 chr12 83914795 83914954 -59871501 - L1MC/D LINE L1 -439 5682 5539 334 259 140 36 chr12 83914962 83915155 -59871300 - L1MC/D LINE L1 -2341 5467 5255 2316 87 3 3 chr12 83915369 83915678 -59870777 - AluSp SINE Alu -4 309 1 180 0 0 0 chr12 83915773 83915793 -59870662 + (TTG)n Simple_repeat Simple_repeat 2 21 0 252 0 0 0 chr12 83916211 83916239 -59870216 + (TG)n Simple_repeat Simple_repeat 1 28 0 506 313 84 7 chr12 83916787 83917062 -59869393 + L1M4 LINE L1 4031 4326 -1820 367 335 120 40 chr12 83917090 83917773 -59868682 + L1M4 LINE L1 4370 5107 -1039 443 338 22 37 chr12 83919021 83919293 -59867162 - L3b LINE CR1 -114 1469 1202 23 20 5 0 chr12 83919709 83919767 -59866688 + AT_rich Low_complexity Low_complexity 1 30 0 237 119 0 0 chr12 83920743 83920785 -59865670 + (TC)n Simple_repeat Simple_repeat 2 43 0 387 41 0 0 chr12 83920785 83920834 -59865621 + (CA)n Simple_repeat Simple_repeat 1 49 0 34 65 0 0 chr12 83921043 83921105 -59865350 + AT_rich Low_complexity Low_complexity 1 62 0 465 279 19 39 chr12 83922045 83922199 -59864256 - L2 LINE L2 0 3313 3163 283 258 40 8 chr12 83922992 83923116 -59863339 + L1MCc LINE L1 1366 1493 -4930 486 286 29 7 chr12 83923663 83923803 -59862652 + MLT1I LTR MaLR 267 409 0 851 314 41 16 chr12 83923829 83924192 -59862263 + L2 LINE L2 2848 3219 -94 5238 193 38 20 chr12 83924193 83925581 -59860874 - L1MC1 LINE L1 0 6333 4915 305 295 32 0 chr12 83925581 83925676 -59860779 + L2 LINE L2 3170 3267 -5 182 37 37 0 chr12 83925909 83925936 -59860519 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 83927956 83928001 -59858454 + AT_rich Low_complexity Low_complexity 1 45 0 312 300 117 8 chr12 83929076 83929187 -59857268 - MIR SINE MIR -110 152 29 381 288 176 7 chr12 83929187 83929340 -59857115 - MER5A DNA MER1_type -1 188 10 7942 141 57 54 chr12 83929855 83930138 -59856317 + Tigger1 DNA MER2_type 370 651 -1767 2543 61 0 3 chr12 83930138 83930450 -59856005 + AluY SINE Alu 1 311 0 7942 141 57 54 chr12 83930450 83930493 -59855962 + Tigger1 DNA MER2_type 651 692 -1726 333 0 0 0 chr12 83930493 83930530 -59855925 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7942 141 57 54 chr12 83930530 83931701 -59854754 + Tigger1 DNA MER2_type 692 1852 -566 2113 134 0 10 chr12 83931701 83932014 -59854441 + AluSx SINE Alu 1 310 -2 7942 141 57 54 chr12 83932014 83932583 -59853872 + Tigger1 DNA MER2_type 1852 2418 0 500 192 0 29 chr12 83933514 83933618 -59852837 - MARNA DNA Mariner -338 248 148 3849 24 4 2 chr12 83933641 83934098 -59852357 - L1PA4 LINE L1 0 6155 5698 255 290 169 0 chr12 83934098 83934222 -59852233 + MARNA DNA Mariner 431 575 -11 376 346 40 26 chr12 83936714 83936942 -59849513 + MIR SINE MIR 1 231 -31 23 0 0 0 chr12 83940784 83940807 -59845648 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr12 83940889 83940919 -59845536 + (A)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr12 83941142 83941170 -59845285 + AT_rich Low_complexity Low_complexity 1 28 0 513 238 92 66 chr12 83941717 83942020 -59844435 + L1ME4a LINE L1 5802 6112 -9 22 56 0 0 chr12 83942041 83942077 -59844378 + AT_rich Low_complexity Low_complexity 1 36 0 221 0 0 33 chr12 83942411 83942441 -59844014 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 83944599 83944619 -59841836 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1859 130 3 7 chr12 83944711 83945018 -59841437 - AluSx SINE Alu 0 306 1 1602 70 9 0 chr12 83945628 83945842 -59840613 + AluY SINE Alu 92 307 -4 1546 88 36 28 chr12 83946236 83946487 -59839968 + L1PA10 LINE L1 5913 6165 -3 460 295 142 56 chr12 83946605 83947363 -59839092 + L1MC5 LINE L1 6716 7495 -547 200 180 20 20 chr12 83947700 83947750 -59838705 + A-rich Low_complexity Low_complexity 6 55 0 27 0 0 0 chr12 83947873 83947900 -59838555 + AT_rich Low_complexity Low_complexity 1 27 0 320 279 86 70 chr12 83948134 83948435 -59838020 + L1ME1 LINE L1 2269 2574 -3572 279 244 44 0 chr12 83948524 83948614 -59837841 - L1MC4 LINE L1 -1335 6707 6614 435 308 55 61 chr12 83948620 83948932 -59837523 + L1ME1 LINE L1 2676 2985 -3161 229 185 46 31 chr12 83948942 83949007 -59837448 - MER3 DNA MER1_type 0 209 144 2255 263 105 18 chr12 83949027 83949913 -59836542 + L1ME1 LINE L1 5195 6158 -8 257 242 31 46 chr12 83949935 83950082 -59836373 + L1M4 LINE L1 2932 3078 -3068 * 6678 201 8 57 chr12 83950078 83950765 -59835690 + L1P LINE L1 2585 3304 -2842 1723 104 0 20 chr12 83950765 83951014 -59835441 + AluSg SINE Alu 59 302 -8 6678 201 8 57 chr12 83951014 83951605 -59834850 + L1P LINE L1 3304 3761 -2385 2112 103 3 10 chr12 83951605 83951907 -59834548 + AluSq SINE Alu 2 301 -12 6678 201 8 57 chr12 83951907 83952345 -59834110 + L1P LINE L1 3761 4219 -1927 2443 149 32 25 chr12 83952374 83952971 -59833484 - L1MA4 LINE L1 -13 6287 5535 416 302 63 52 chr12 83953341 83953633 -59832822 - MLT1J1 LTR MaLR -139 311 6 196 280 0 0 chr12 83953844 83953894 -59832561 + MIR3 SINE MIR 153 202 -6 26 50 0 0 chr12 83954082 83954122 -59832333 + AT_rich Low_complexity Low_complexity 1 40 0 215 227 0 0 chr12 83954146 83954190 -59832265 + L2 LINE L2 3268 3311 -2 366 324 10 0 chr12 83954875 83954977 -59831478 - L2 LINE L2 -1 3271 3169 334 338 56 5 chr12 83955861 83956074 -59830381 - L2 LINE L2 -701 2613 2390 279 286 10 61 chr12 83956050 83956148 -59830307 + MIR SINE MIR 8 100 -162 * 219 281 31 0 chr12 83956654 83956718 -59829737 - MIR SINE MIR -10 252 187 266 308 154 0 chr12 83956731 83956835 -59829620 + MLT1I LTR MaLR 6 125 -284 350 341 22 50 chr12 83956842 83957024 -59829431 + MLT1I LTR MaLR 233 409 0 614 217 0 148 chr12 83957024 83957227 -59829228 - MIR SINE MIR -89 173 1 23 0 0 0 chr12 83957570 83957593 -59828862 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr12 83959786 83959818 -59826637 + (T)n Simple_repeat Simple_repeat 1 32 0 312 316 46 3 chr12 83960868 83961044 -59825411 + MIR SINE MIR 17 248 -14 29 47 0 0 chr12 83961132 83961175 -59825280 + AT_rich Low_complexity Low_complexity 1 43 0 9535 194 14 2 chr12 83961230 83963942 -59822513 - L1PA14 LINE L1 -2 6159 3421 408 348 50 20 chr12 83963956 83964157 -59822298 - L1ME4a LINE L1 -200 5921 5715 480 336 40 24 chr12 83964199 83964449 -59822006 - L2 LINE L2 -54 3259 3006 219 36 0 0 chr12 83965529 83965557 -59820898 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1808 177 7 7 chr12 83965738 83966043 -59820412 + AluSx SINE Alu 2 306 -6 222 261 11 43 chr12 83966070 83966162 -59820293 + GA-rich Low_complexity Low_complexity 3 91 0 714 70 17 9 chr12 83966291 83966406 -59820049 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 189 0 0 0 chr12 83967718 83967739 -59818716 + (A)n Simple_repeat Simple_repeat 1 21 0 2110 119 20 0 chr12 83968109 83968412 -59818043 - AluSx SINE Alu -3 309 1 22 56 0 0 chr12 83968613 83968649 -59817806 + AT_rich Low_complexity Low_complexity 1 36 0 406 291 153 20 chr12 83968800 83969003 -59817452 + MIR SINE MIR 6 235 -27 226 209 29 48 chr12 83969005 83969110 -59817345 + (TTATA)n Simple_repeat Simple_repeat 3 105 0 244 320 0 16 chr12 83969110 83969238 -59817217 - L1ME LINE L1 -312 5809 5684 3613 100 53 34 chr12 83970118 83970700 -59815755 + L1PA11 LINE L1 5582 6174 0 311 317 50 6 chr12 83971187 83971348 -59815107 + LTR33A LTR ERVL 346 513 -10 634 296 86 30 chr12 83971553 83972094 -59814361 + L1ME3A LINE L1 5299 5876 -294 1100 47 20 13 chr12 83974736 83974885 -59811570 - AluY SINE Alu -1 310 161 1235 225 6 35 chr12 83975093 83975436 -59811019 - L1MB5 LINE L1 -16 6168 5844 2954 69 0 21 chr12 83975454 83975873 -59810582 - LTR7 LTR ERV1 -40 410 1 2465 77 48 13 chr12 83975873 83976252 -59810203 - HERVH LTR ERV1 0 7713 7322 1383 130 19 0 chr12 83976250 83976466 -59809989 - HERVH LTR ERV1 -1894 5819 5600 * 498 240 0 0 chr12 83976467 83976571 -59809884 - HERVH LTR ERV1 -2564 5149 5046 2222 220 30 16 chr12 83976583 83977151 -59809304 - L1MB5 LINE L1 -333 5841 5266 13730 154 30 18 chr12 83977151 83977414 -59809041 + Tigger1 DNA MER2_type 2 260 -2158 1935 123 0 17 chr12 83977414 83977714 -59808741 - AluSg SINE Alu -15 295 1 13730 154 30 18 chr12 83977714 83979839 -59806616 + Tigger1 DNA MER2_type 260 2418 0 5568 238 38 35 chr12 83979839 83981608 -59804847 - L1MB5 LINE L1 -878 5268 3494 484 258 77 0 chr12 83981604 83981786 -59804669 - L1MC/D LINE L1 -2590 5452 5257 * 288 224 72 40 chr12 83981789 83981914 -59804541 - L1MC/D LINE L1 -935 5211 5083 * 1256 308 122 13 chr12 83981902 83982895 -59803560 - L1M4 LINE L1 -863 5283 4183 505 343 61 48 chr12 83982930 83983242 -59803213 + MLT2E LTR ERVL 19 334 -294 29 28 0 0 chr12 83983523 83983559 -59802896 + AT_rich Low_complexity Low_complexity 1 36 0 1512 99 5 0 chr12 83983992 83984194 -59802261 + AluSp SINE Alu 111 313 0 218 227 0 0 chr12 83985197 83985241 -59801214 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr12 83985271 83985300 -59801155 + AT_rich Low_complexity Low_complexity 1 29 0 829 253 0 0 chr12 83985837 83986007 -59800448 - MER58B DNA MER1_type -4 337 168 185 304 0 0 chr12 83986261 83986307 -59800148 - L2 LINE L2 0 3313 3268 24 32 0 0 chr12 83986411 83986442 -59800013 + AT_rich Low_complexity Low_complexity 1 31 0 196 335 98 23 chr12 83986487 83986660 -59799795 + L2 LINE L2 2185 2370 -944 2153 110 10 0 chr12 83987154 83987446 -59799009 + AluSg SINE Alu 1 295 -15 1205 291 104 42 chr12 83987448 83989214 -59797241 + L1ME LINE L1 9 1653 -4743 877 299 50 27 chr12 83989313 83989838 -59796617 + L1M4 LINE L1 4614 5150 -996 600 289 138 49 chr12 83989855 83990080 -59796375 + L1ME LINE L1 3694 3898 -2333 1716 189 3 0 chr12 83990080 83990376 -59796079 + AluJo SINE Alu 6 302 -10 600 289 138 49 chr12 83990376 83991850 -59794605 + L1ME LINE L1 3898 5545 -686 295 254 123 0 chr12 83991855 83991977 -59794478 + MER69 DNA AcHobo 2383 2519 -7 1927 122 21 0 chr12 83992117 83992405 -59794050 + AluSc SINE Alu 1 294 -15 2288 82 0 0 chr12 83992424 83992705 -59793750 + AluSx SINE Alu 17 297 -15 241 121 35 69 chr12 83992777 83992835 -59793620 + L1ME3A LINE L1 5900 5955 -215 229 263 88 0 chr12 83993345 83993402 -59793053 + MIR SINE MIR 81 142 -120 180 355 55 9 chr12 83994013 83994123 -59792332 + MIR3 SINE MIR 43 157 -51 216 0 0 0 chr12 83994818 83994842 -59791613 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1310 191 35 62 chr12 83995048 83995336 -59791119 + AluJo SINE Alu 3 282 -30 592 320 45 5 chr12 83995526 83995748 -59790707 - MIR SINE MIR 0 262 32 21 57 0 0 chr12 83995844 83995879 -59790576 + AT_rich Low_complexity Low_complexity 1 35 0 2327 56 10 3 chr12 83996015 83996317 -59790138 - AluY SINE Alu -7 304 1 321 241 8 0 chr12 83997566 83997701 -59788754 + CT-rich Low_complexity Low_complexity 1 136 0 200 108 0 27 chr12 83999614 83999651 -59786804 + (CAG)n Simple_repeat Simple_repeat 3 38 0 252 351 0 18 chr12 84000156 84000270 -59786185 + CT-rich Low_complexity Low_complexity 1 112 0 22 35 0 0 chr12 84003172 84003201 -59783254 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr12 84003215 84003257 -59783198 + AT_rich Low_complexity Low_complexity 1 42 0 192 217 0 0 chr12 84003387 84003433 -59783022 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 24 32 0 0 chr12 84006893 84006924 -59779531 + AT_rich Low_complexity Low_complexity 1 31 0 313 239 9 35 chr12 84007360 84007473 -59778982 + T-rich Low_complexity Low_complexity 4 113 0 493 335 48 14 chr12 84008887 84009096 -59777359 - MIR SINE MIR -25 237 22 395 244 25 25 chr12 84009453 84009572 -59776883 - MLT1K LTR MaLR -38 550 432 459 272 50 33 chr12 84010069 84010249 -59776206 - L2 LINE L2 -31 3282 3100 210 388 31 0 chr12 84010286 84010384 -59776071 - L2 LINE L2 -308 3005 2905 23 0 0 0 chr12 84010422 84010445 -59776010 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 84011285 84011305 -59775150 + (T)n Simple_repeat Simple_repeat 1 20 0 228 300 0 0 chr12 84011373 84011453 -59775002 - L1MC4 LINE L1 -1344 6698 6619 * 252 306 47 0 chr12 84011434 84011519 -59774936 + L1MC4 LINE L1 6614 6702 -1340 530 52 111 7 chr12 84011520 84011818 -59774637 + (TA)n Simple_repeat Simple_repeat 1 329 0 2604 106 0 8 chr12 84011974 84012341 -59774114 - THE1B LTR MaLR 0 364 1 306 248 166 45 chr12 84012397 84012554 -59773901 + MER112 DNA MER1_type 64 239 -21 1301 191 156 0 chr12 84012554 84012811 -59773644 - AluJo SINE Alu -5 297 1 192 314 0 0 chr12 84013238 84013289 -59773166 + MIR3 SINE MIR 140 190 -18 304 253 49 29 chr12 84013871 84013994 -59772461 - MLT1J2 LTR MaLR -250 161 41 593 380 24 12 chr12 84014269 84014598 -59771857 + L2 LINE L2 2260 2592 -722 538 393 38 10 chr12 84014620 84014924 -59771531 + L2 LINE L2 2782 3093 -179 649 285 121 36 chr12 84015113 84015478 -59770977 + L2 LINE L2 2918 3313 0 25 0 0 0 chr12 84015720 84015745 -59770710 + AT_rich Low_complexity Low_complexity 1 25 0 258 403 56 35 chr12 84016181 84016412 -59770043 + L2 LINE L2 3032 3267 -5 229 222 0 25 chr12 84016597 84016678 -59769777 + GA-rich Low_complexity Low_complexity 4 82 0 506 298 100 55 chr12 84016751 84017060 -59769395 + L2 LINE L2 2988 3310 -3 28 0 0 0 chr12 84017345 84017373 -59769082 + AT_rich Low_complexity Low_complexity 1 28 0 280 239 26 80 chr12 84018102 84018215 -59768240 + L2 LINE L2 3199 3305 -8 39 74 0 0 chr12 84018850 84018931 -59767524 + AT_rich Low_complexity Low_complexity 1 81 0 21 57 0 0 chr12 84019155 84019190 -59767265 + AT_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr12 84019538 84019574 -59766881 + AT_rich Low_complexity Low_complexity 1 36 0 485 325 53 29 chr12 84019761 84019970 -59766485 - MIR SINE MIR 0 262 49 875 135 6 17 chr12 84020102 84020280 -59766175 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 596 273 69 36 chr12 84020490 84020765 -59765690 - L2 LINE L2 -394 2920 2637 3104 169 19 4 chr12 84021916 84022430 -59764025 + Tigger7 DNA MER2_type 1 522 -1965 369 283 0 0 chr12 84022429 84022521 -59763934 + Tigger7 DNA MER2_type 2396 2487 0 * 29 28 0 0 chr12 84023232 84023268 -59763187 + AT_rich Low_complexity Low_complexity 1 36 0 181 296 23 0 chr12 84023419 84023463 -59762992 + L2 LINE L2 3254 3298 -15 1377 67 0 0 chr12 84025236 84025444 -59761011 + L1PA5 LINE L1 5957 6164 0 186 43 0 0 chr12 84025976 84025999 -59760456 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 372 341 45 11 chr12 84026115 84026294 -59760161 - MIR SINE MIR -44 218 34 28 0 0 0 chr12 84028721 84028749 -59757706 + AT_rich Low_complexity Low_complexity 1 28 0 368 248 83 38 chr12 84028769 84028926 -59757529 + MER69 DNA AcHobo 27 190 -2336 306 0 0 0 chr12 84029213 84029247 -59757208 + (T)n Simple_repeat Simple_repeat 1 34 0 883 202 17 0 chr12 84029541 84029714 -59756741 + L1MA7 LINE L1 5883 6058 -233 21 0 0 0 chr12 84030126 84030147 -59756308 + GC_rich Low_complexity Low_complexity 1 21 0 188 45 0 0 chr12 84030348 84030370 -59756085 + (T)n Simple_repeat Simple_repeat 1 22 0 291 294 36 103 chr12 84030405 84030599 -59755856 + MIR SINE MIR 33 213 -49 2455 122 25 0 chr12 84030662 84031056 -59755399 + L1MA8 LINE L1 5883 6286 -5 234 0 0 0 chr12 84033402 84033428 -59753027 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 680 260 17 17 chr12 84034104 84034285 -59752170 + MIR SINE MIR 48 228 -34 22 0 0 0 chr12 84034809 84034831 -59751624 + AT_rich Low_complexity Low_complexity 1 22 0 221 196 0 71 chr12 84034983 84035039 -59751416 - L2 LINE L2 0 3313 3262 28 0 0 0 chr12 84035435 84035463 -59750992 + AT_rich Low_complexity Low_complexity 1 28 0 584 306 124 34 chr12 84036222 84036712 -59749743 - L2 LINE L2 0 3313 2780 2204 81 0 3 chr12 84037902 84038197 -59748258 + L1PA7 LINE L1 5854 6147 -7 21 89 0 0 chr12 84038669 84038725 -59747730 + AT_rich Low_complexity Low_complexity 1 56 0 214 132 38 0 chr12 84039250 84039303 -59747152 + (TA)n Simple_repeat Simple_repeat 1 55 0 2053 109 0 3 chr12 84039303 84039587 -59746868 - AluSg SINE Alu -25 285 3 227 379 48 0 chr12 84041053 84041156 -59745299 - L3 LINE CR1 -99 1478 1371 22 0 0 0 chr12 84041775 84041797 -59744658 + AT_rich Low_complexity Low_complexity 1 22 0 433 296 45 35 chr12 84042336 84042535 -59743920 - L2 LINE L2 -1 3312 3112 207 279 192 10 chr12 84042608 84042712 -59743743 - L2 LINE L2 -3139 175 53 195 343 29 14 chr12 84042849 84042919 -59743536 - L2 LINE L2 -15 3257 3187 270 306 144 22 chr12 84043067 84043247 -59743208 - MIR SINE MIR -10 252 51 21 36 0 0 chr12 84043439 84043467 -59742988 + AT_rich Low_complexity Low_complexity 1 28 0 225 254 0 0 chr12 84044168 84044227 -59742228 + MIR SINE MIR 74 132 -130 401 292 50 0 chr12 84046149 84046269 -59740186 + L2 LINE L2 3188 3313 0 207 235 0 39 chr12 84046609 84046660 -59739795 - L2 LINE L2 -74 3239 3191 519 314 78 0 chr12 84046958 84047162 -59739293 - L2 LINE L2 -465 2849 2630 626 314 189 29 chr12 84047166 84047720 -59738735 - L2 LINE L2 -846 2468 1826 22 80 0 0 chr12 84049182 84049232 -59737223 + AT_rich Low_complexity Low_complexity 1 50 0 391 288 8 8 chr12 84049959 84050077 -59736378 + MIR SINE MIR 89 206 -56 374 101 22 22 chr12 84050510 84050599 -59735856 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 210 390 0 10 chr12 84050937 84051037 -59735418 - L2 LINE L2 -181 3091 2993 339 322 98 23 chr12 84051218 84051392 -59735063 - MER5B DNA MER1_type 0 189 3 557 121 30 10 chr12 84052774 84052873 -59733582 - L1MC1 LINE L1 0 6333 6233 695 211 42 0 chr12 84052974 84053116 -59733339 - AluJb SINE Alu -49 263 116 624 273 240 4 chr12 84053128 84053403 -59733052 - L3 LINE CR1 -193 1384 1045 1693 52 0 0 chr12 84053409 84053622 -59732833 + L1PA5 LINE L1 5936 6148 -6 281 299 60 27 chr12 84054702 84054886 -59731569 + L1ME LINE L1 5679 5868 -253 23 0 0 0 chr12 84055185 84055208 -59731247 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 84056101 84056123 -59730332 + AT_rich Low_complexity Low_complexity 1 22 0 214 406 14 36 chr12 84056836 84056974 -59729481 - MIR SINE MIR -122 140 6 197 214 179 0 chr12 84057367 84057423 -59729032 + MIR SINE MIR 197 262 0 245 359 17 17 chr12 84058183 84058300 -59728155 + L2 LINE L2 3149 3265 -7 207 330 21 43 chr12 84058311 84058405 -59728050 + MIR3 SINE MIR 15 106 -102 43 71 0 0 chr12 84058421 84058506 -59727949 + AT_rich Low_complexity Low_complexity 1 85 0 232 259 37 0 chr12 84058609 84058663 -59727792 - L3 LINE CR1 -1 1576 1521 611 257 102 5 chr12 84058803 84058990 -59727465 - MIR SINE MIR -46 216 12 728 207 57 36 chr12 84059124 84059317 -59727138 + MER3 DNA MER1_type 13 209 0 4238 200 72 113 chr12 84059568 84059714 -59726741 - L1MC4 LINE L1 -2 8040 7890 183 80 0 0 chr12 84059714 84059739 -59726716 + (TG)n Simple_repeat Simple_repeat 2 26 0 4238 200 72 113 chr12 84059739 84061641 -59724814 - L1MC4 LINE L1 -152 7890 6078 215 219 85 49 chr12 84061641 84061723 -59724732 + MIR SINE MIR 165 249 -13 3515 184 42 11 chr12 84064190 84064901 -59721554 - MER44D DNA MER2_type 0 605 1 229 211 0 0 chr12 84064969 84065007 -59721448 + Tigger2 DNA MER2_type 12 49 -2669 1949 156 0 25 chr12 84065125 84065445 -59721010 + AluSx SINE Alu 1 312 0 272 253 71 30 chr12 84065678 84065777 -59720678 + MIR SINE MIR 77 179 -83 227 191 0 0 chr12 84065957 84066004 -59720451 - L1MA7 LINE L1 -332 5959 5913 1392 161 35 3 chr12 84066032 84066317 -59720138 + L1MA7 LINE L1 5997 6290 -1 424 323 0 0 chr12 84066809 84066939 -59719516 + MIR SINE MIR 79 208 -54 999 165 0 0 chr12 84067021 84067197 -59719258 + AluSq SINE Alu 136 311 -2 872 120 0 7 chr12 84067197 84067339 -59719116 + (GGAA)n Simple_repeat Simple_repeat 2 142 0 794 152 17 17 chr12 84067481 84067659 -59718796 + GA-rich Low_complexity Low_complexity 1 178 0 247 202 67 118 chr12 84068492 84068611 -59717844 + MIR SINE MIR 103 215 -47 559 147 42 0 chr12 84070182 84070277 -59716178 - Tigger7 DNA MER2_type -9 2478 2380 28 0 0 0 chr12 84071028 84071056 -59715399 + AT_rich Low_complexity Low_complexity 1 28 0 368 248 83 38 chr12 84071076 84071233 -59715222 + MER69 DNA AcHobo 27 190 -1036 306 0 0 0 chr12 84071521 84071555 -59714900 + (T)n Simple_repeat Simple_repeat 1 34 0 447 169 146 0 chr12 84071887 84071976 -59714479 + THE1C LTR MaLR 1 102 -273 1362 174 0 61 chr12 84071978 84072242 -59714213 + AluJb SINE Alu 54 301 -11 311 264 0 0 chr12 84073004 84073076 -59713379 - L2 LINE L2 -2 3270 3199 212 0 36 0 chr12 84073308 84073336 -59713119 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chr12 84073749 84073781 -59712674 + AT_rich Low_complexity Low_complexity 1 32 0 267 260 26 13 chr12 84073947 84074024 -59712431 + MIR3 SINE MIR 124 201 -7 1573 180 57 45 chr12 84074369 84074885 -59711570 - MER67C LTR ERV1 -30 484 1 22 0 0 0 chr12 84076815 84076837 -59709618 + AT_rich Low_complexity Low_complexity 1 22 0 1579 153 25 15 chr12 84078095 84078369 -59708086 - AluJo SINE Alu -30 282 6 2339 70 3 25 chr12 84078704 84079058 -59707397 - AluY SINE Alu 0 347 1 369 0 0 0 chr12 84079081 84079122 -59707333 + (CA)n Simple_repeat Simple_repeat 2 42 0 1145 53 27 0 chr12 84080445 84080595 -59705860 + HERV9 LTR ERV1 259 412 -7987 2536 157 12 9 chr12 84080893 84081320 -59705135 - MSTA LTR MaLR 0 428 1 23 68 0 0 chr12 84081748 84081792 -59704663 + AT_rich Low_complexity Low_complexity 1 44 0 23 86 0 0 chr12 84082880 84082938 -59703517 + AT_rich Low_complexity Low_complexity 1 58 0 308 179 49 8 chr12 84083057 84083180 -59703275 + (TA)n Simple_repeat Simple_repeat 2 129 0 321 345 34 0 chr12 84083910 84084029 -59702426 - L2 LINE L2 -1 3312 3190 1720 120 6 123 chr12 84084059 84084408 -59702047 + AluSg1 SINE Alu 1 308 -1 28 29 0 0 chr12 84085580 84085615 -59700840 + AT_rich Low_complexity Low_complexity 1 35 0 438 20 0 0 chr12 84086640 84086691 -59699764 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr12 84087764 84087785 -59698670 + AT_rich Low_complexity Low_complexity 1 21 0 182 402 26 8 chr12 84088386 84088503 -59697952 - MIR SINE MIR -122 140 22 249 308 45 53 chr12 84089120 84089253 -59697202 - L2 LINE L2 0 3313 3182 245 253 203 0 chr12 84090883 84090962 -59695493 + L2 LINE L2 3199 3293 -20 21 57 0 0 chr12 84092236 84092271 -59694184 + AT_rich Low_complexity Low_complexity 1 35 0 201 74 0 0 chr12 84092367 84092394 -59694061 + (GA)n Simple_repeat Simple_repeat 2 28 0 1250 201 108 0 chr12 84093224 84093493 -59692962 - MLT1A1 LTR MaLR -4 361 64 345 47 0 0 chr12 84093639 84093682 -59692773 + (TG)n Simple_repeat Simple_repeat 2 44 0 661 286 15 31 chr12 84094107 84094303 -59692152 + MIR SINE MIR 6 198 -64 600 142 224 0 chr12 84094535 84094669 -59691786 - HSMAR2 DNA Mariner -2 1300 1137 623 174 9 0 chr12 84095027 84095142 -59691313 + FLAM_C SINE Alu 3 118 -15 413 307 91 6 chr12 84095271 84095447 -59691008 - MIR SINE MIR -21 241 51 180 152 0 0 chr12 84095526 84095559 -59690896 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1978 147 0 0 chr12 84096250 84096550 -59689905 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr12 84097874 84097896 -59688559 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr12 84098297 84098326 -59688129 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1399 183 19 42 chr12 84098934 84099245 -59687210 - AluJo SINE Alu -7 305 2 218 122 0 20 chr12 84099886 84099935 -59686520 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 335 299 0 34 chr12 84100043 84100160 -59686295 + MIR SINE MIR 134 246 -16 192 77 0 0 chr12 84100163 84100189 -59686266 + (T)n Simple_repeat Simple_repeat 1 26 0 226 363 0 57 chr12 84100587 84100711 -59685744 + L2 LINE L2 2648 2764 -550 1550 168 19 16 chr12 84100739 84101049 -59685406 - L1MB1 LINE L1 -103 6065 5755 2489 192 22 25 chr12 84101068 84101821 -59684634 + L1M3 LINE L1 5049 5807 -361 30 69 0 0 chr12 84102772 84102830 -59683625 + AT_rich Low_complexity Low_complexity 1 58 0 201 324 19 48 chr12 84103250 84103355 -59683100 + L2 LINE L2 2286 2387 -927 320 333 70 0 chr12 84103444 84103573 -59682882 - MIR SINE MIR -122 140 3 2243 111 0 0 chr12 84103634 84103932 -59682523 + AluSg SINE Alu 1 298 -12 293 86 14 57 chr12 84104060 84104130 -59682325 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 211 294 147 0 chr12 84104152 84104254 -59682201 - MIR SINE MIR -60 202 86 239 404 87 25 chr12 84104955 84105116 -59681339 - L2 LINE L2 -8 3264 3094 251 353 112 40 chr12 84105173 84105672 -59680783 - L2 LINE L2 -631 2683 2149 912 276 171 14 chr12 84106643 84106836 -59679619 - L2 LINE L2 0 3313 3152 1601 164 98 16 chr12 84106836 84107154 -59679301 - MER2 DNA MER2_type 0 344 1 912 276 171 14 chr12 84107154 84107380 -59679075 - L2 LINE L2 -161 3152 2828 208 315 123 27 chr12 84107504 84107650 -59678805 - L2 LINE L2 -455 2859 2700 319 313 35 17 chr12 84108373 84108488 -59677967 + MIR SINE MIR 15 131 -131 1518 120 0 62 chr12 84108758 84108999 -59677456 + AluSx SINE Alu 55 280 -32 28 29 0 0 chr12 84109120 84109155 -59677300 + AT_rich Low_complexity Low_complexity 1 35 0 310 292 42 10 chr12 84109626 84109722 -59676733 + MIR SINE MIR 31 129 -79 29 0 0 0 chr12 84110367 84110396 -59676059 + AT_rich Low_complexity Low_complexity 1 29 0 1387 154 50 22 chr12 84110959 84111277 -59675178 - L1MA8 LINE L1 0 6291 5965 968 180 1 2 chr12 84111277 84111462 -59674993 + L1M2 LINE L1 5581 5763 -398 393 289 5 78 chr12 84111600 84111776 -59674679 - L2 LINE L2 -1 3312 3125 450 0 0 0 chr12 84111776 84111826 -59674629 + (TA)n Simple_repeat Simple_repeat 2 51 0 1776 165 64 3 chr12 84111827 84112154 -59674301 - MER7A DNA MER2_type 0 346 2 393 289 5 78 chr12 84112154 84112193 -59674262 - L2 LINE L2 -187 3126 3111 23 0 0 0 chr12 84112245 84112268 -59674187 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr12 84112268 84112291 -59674164 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2210 68 0 0 chr12 84112294 84112573 -59673882 - AluY SINE Alu -32 279 1 2007 112 0 7 chr12 84112722 84113007 -59673448 + AluSg SINE Alu 3 285 -25 181 151 38 0 chr12 84113007 84113060 -59673395 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 89 0 0 chr12 84113586 84113642 -59672813 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr12 84114094 84114124 -59672331 + AT_rich Low_complexity Low_complexity 1 30 0 3453 96 57 37 chr12 84114124 84114687 -59671768 - L1PA11 LINE L1 -19 6155 5582 244 320 0 16 chr12 84115561 84115689 -59670766 + L1ME LINE L1 5684 5809 -312 226 209 29 48 chr12 84115689 84115794 -59670661 + (TATAA)n Simple_repeat Simple_repeat 3 105 0 406 291 153 20 chr12 84115796 84115999 -59670456 - MIR SINE MIR -27 235 6 22 56 0 0 chr12 84116150 84116186 -59670269 + AT_rich Low_complexity Low_complexity 1 36 0 2110 119 20 0 chr12 84116387 84116690 -59669765 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr12 84117060 84117081 -59669374 + (T)n Simple_repeat Simple_repeat 1 21 0 211 294 147 0 chr12 84117675 84117777 -59668678 + MIR SINE MIR 86 202 -60 293 86 14 57 chr12 84117799 84117869 -59668586 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 2223 92 3 0 chr12 84117997 84118280 -59668175 - AluSx SINE Alu -12 300 17 1927 122 21 0 chr12 84118299 84118587 -59667868 - AluSc SINE Alu -15 294 1 295 254 123 0 chr12 84118727 84118849 -59667606 - MER69 DNA AcHobo -7 2519 2383 350 282 57 35 chr12 84118854 84119204 -59667251 - L1ME LINE L1 -688 5476 5122 474 303 81 19 chr12 84119263 84119735 -59666720 - L1ME LINE L1 -1159 4987 4487 347 347 46 12 chr12 84120392 84120565 -59665890 - MIR SINE MIR -50 212 34 21 0 0 0 chr12 84121442 84121463 -59664992 + AT_rich Low_complexity Low_complexity 1 21 0 183 156 0 0 chr12 84123533 84123565 -59662890 + T-rich Low_complexity Low_complexity 1 32 0 217 200 18 36 chr12 84124420 84124475 -59661980 - L2 LINE L2 -1 3312 3259 225 218 0 26 chr12 84125804 84125882 -59660573 + (GGGTG)n Simple_repeat Simple_repeat 3 78 0 261 250 34 11 chr12 84125992 84126080 -59660375 + (CCCCG)n Simple_repeat Simple_repeat 4 93 0 240 278 15 45 chr12 84126024 84126157 -59660298 + C-rich Low_complexity Low_complexity 1 129 0 * 695 23 23 0 chr12 84126290 84126378 -59660077 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 921 137 0 7 chr12 84126379 84126525 -59659930 - AluSq SINE Alu -33 280 136 424 323 0 0 chr12 84126607 84126737 -59659718 - MIR SINE MIR -54 208 79 201 324 19 48 chr12 84130942 84131047 -59655408 + L2 LINE L2 2286 2387 -927 320 333 70 0 chr12 84131136 84131265 -59655190 - MIR SINE MIR -122 140 3 22 0 0 0 chr12 84131461 84131483 -59654972 + GC_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr12 84133255 84133297 -59653158 + AT_rich Low_complexity Low_complexity 1 42 0 345 318 100 23 chr12 84133686 84133860 -59652595 - MER5B DNA MER1_type 0 189 3 377 288 8 8 chr12 84134735 84134853 -59651602 - MIR SINE MIR -56 206 89 537 393 38 10 chr12 84136162 84136466 -59649989 - L2 LINE L2 -179 3093 2782 558 371 20 32 chr12 84136488 84136830 -59649625 - L2 LINE L2 -722 2592 2255 557 121 30 10 chr12 84137120 84137219 -59649236 + L1MC1 LINE L1 6233 6333 0 26 0 0 0 chr12 84138819 84138845 -59647610 + AT_rich Low_complexity Low_complexity 1 26 0 236 196 54 0 chr12 84139296 84139352 -59647103 + CT-rich Low_complexity Low_complexity 1 59 0 185 189 0 56 chr12 84139420 84139510 -59646945 + T-rich Low_complexity Low_complexity 5 89 0 220 261 0 0 chr12 84140297 84140343 -59646112 - MIR SINE MIR -136 126 81 602 341 119 37 chr12 84141216 84142087 -59644368 - L2 LINE L2 -211 3061 2110 224 292 67 58 chr12 84142109 84142229 -59644226 + MIR SINE MIR 122 242 -20 441 0 0 0 chr12 84143116 84143165 -59643290 + (TA)n Simple_repeat Simple_repeat 1 49 0 184 275 88 25 chr12 84143992 84144072 -59642383 - L2 LINE L2 -51 3221 3137 496 322 44 0 chr12 84144651 84144831 -59641624 - MIR SINE MIR -54 208 21 26 50 0 0 chr12 84145094 84145134 -59641321 + AT_rich Low_complexity Low_complexity 1 40 0 547 242 43 12 chr12 84147187 84147348 -59639107 + MER103 DNA DNA 1 166 0 300 328 70 12 chr12 84148238 84148409 -59638046 + L2 LINE L2 2627 2807 -507 198 328 35 17 chr12 84148808 84148866 -59637589 + L2 LINE L2 3142 3200 -72 369 340 96 21 chr12 84149033 84149221 -59637234 + MIR SINE MIR 20 221 -41 205 310 0 0 chr12 84149242 84149300 -59637155 - L2 LINE L2 0 3313 3256 25 0 0 0 chr12 84149319 84149344 -59637111 + AT_rich Low_complexity Low_complexity 1 25 0 184 258 21 62 chr12 84149426 84149523 -59636932 - L2 LINE L2 -272 3000 2908 377 290 164 39 chr12 84149806 84150037 -59636418 + MIR SINE MIR 3 262 0 251 291 76 63 chr12 84151216 84151374 -59635081 - MIR SINE MIR -43 219 60 537 311 48 0 chr12 84151408 84151575 -59634880 + MIR SINE MIR 88 262 0 1738 138 87 6 chr12 84151576 84151887 -59634568 + MER61A LTR ERV1 7 342 -1 21 71 0 0 chr12 84152420 84152462 -59633993 + AT_rich Low_complexity Low_complexity 1 42 0 541 271 115 49 chr12 84152764 84153215 -59633240 - L1 LINE L1 -1479 4667 4187 309 319 62 0 chr12 84153624 84153737 -59632718 - L1 LINE L1 -2678 3468 3349 21 0 0 0 chr12 84153776 84153797 -59632658 + AT_rich Low_complexity Low_complexity 1 21 0 1504 167 6 43 chr12 84154448 84154771 -59631684 + AluJb SINE Alu 1 311 -1 22 35 0 0 chr12 84154804 84154833 -59631622 + AT_rich Low_complexity Low_complexity 1 29 0 443 274 124 53 chr12 84154932 84155158 -59631297 + L2 LINE L2 3005 3246 -67 266 0 0 29 chr12 84155364 84155399 -59631056 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2263 92 4 0 chr12 84155401 84155682 -59630773 - AluSc SINE Alu -27 282 1 459 264 162 0 chr12 84156556 84156723 -59629732 + MIR SINE MIR 18 211 -51 201 147 0 0 chr12 84157050 84157084 -59629371 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 465 116 9 36 chr12 84157191 84157237 -59629218 + (TAGA)n Simple_repeat Simple_repeat 4 50 -62 1543 170 45 7 chr12 84157237 84157525 -59628930 + AluJo SINE Alu 3 301 -11 465 116 9 36 chr12 84157525 84157590 -59628865 + (TAGA)n Simple_repeat Simple_repeat 50 112 0 762 94 17 8 chr12 84157795 84157912 -59628543 + L1PA8 LINE L1 6052 6169 -3 25 0 0 0 chr12 84158104 84158129 -59628326 + AT_rich Low_complexity Low_complexity 1 25 0 214 174 0 0 chr12 84158487 84158533 -59627922 + C-rich Low_complexity Low_complexity 1 46 0 309 254 221 83 chr12 84158535 84158811 -59627644 + L1M2 LINE L1 836 1149 -5700 243 293 107 59 chr12 84159575 84159828 -59626627 + L2 LINE L2 1830 2094 -1220 359 253 191 31 chr12 84163435 84163597 -59622858 + MIR SINE MIR 2 189 -73 2078 21 0 0 chr12 84164029 84164270 -59622185 - L1PA4 LINE L1 -3 6152 5912 466 336 86 13 chr12 84165126 84165358 -59621097 - MIR SINE MIR -6 256 8 2070 117 4 0 chr12 84166511 84166792 -59619663 - AluSq SINE Alu -31 282 1 366 264 80 18 chr12 84166813 84166976 -59619479 - MIR SINE MIR -55 207 35 21 57 0 0 chr12 84167025 84167060 -59619395 + AT_rich Low_complexity Low_complexity 1 35 0 235 300 116 79 chr12 84167918 84168040 -59618415 + MIR SINE MIR 59 192 -70 192 77 0 0 chr12 84168040 84168066 -59618389 + (TG)n Simple_repeat Simple_repeat 1 26 0 235 300 116 79 chr12 84168066 84168133 -59618322 + MIR SINE MIR 192 255 -7 976 222 9 9 chr12 84168228 84168458 -59617997 + MER96B DNA MER1_type? 8 237 -180 1619 254 36 27 chr12 84169164 84169612 -59616843 + LTR40b LTR ERVL 11 462 0 253 304 51 58 chr12 84169669 84169807 -59616648 + MIR3 SINE MIR 12 148 -60 413 160 0 66 chr12 84169852 84169958 -59616497 - L1PA11 LINE L1 0 6174 6076 257 116 23 0 chr12 84169958 84170001 -59616454 - L1PA3 LINE L1 -97 6058 6015 219 36 0 0 chr12 84170114 84170142 -59616313 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 444 189 21 42 chr12 84170518 84170613 -59615842 + Charlie3 DNA MER1_type 2613 2705 -5 764 283 35 4 chr12 84170617 84170843 -59615612 + MIR SINE MIR 5 237 -25 199 404 43 11 chr12 84170909 84171003 -59615452 + L2 LINE L2 3171 3267 -5 2177 94 4 0 chr12 84171827 84172104 -59614351 + AluY SINE Alu 1 278 -33 477 62 0 0 chr12 84172104 84172169 -59614286 + (CAA)n Simple_repeat Simple_repeat 2 66 0 330 295 54 34 chr12 84174428 84174577 -59611878 - L3b LINE CR1 -133 1450 1299 810 247 66 29 chr12 84175212 84175455 -59611000 + MIR SINE MIR 11 262 0 1735 144 46 26 chr12 84176214 84176561 -59609894 - L1MA7 LINE L1 -175 6116 5763 1015 148 49 0 chr12 84176565 84176768 -59609687 + L1MA7 LINE L1 6079 6291 0 268 371 0 0 chr12 84176841 84176930 -59609525 - L2 LINE L2 0 3313 3225 2218 104 0 0 chr12 84179643 84179931 -59606524 + AluSg SINE Alu 1 288 -22 277 311 98 33 chr12 84180281 84180403 -59606052 + MIR SINE MIR 29 159 -49 2699 10 3 0 chr12 84180725 84181026 -59605429 + AluYa5 SINE Alu 1 302 -9 288 0 0 0 chr12 84181800 84181832 -59604623 + (TG)n Simple_repeat Simple_repeat 1 32 0 528 233 0 0 chr12 84182671 84182817 -59603638 + (TA)n Simple_repeat Simple_repeat 2 147 0 200 338 110 15 chr12 84182831 84182967 -59603488 + MIR3 SINE MIR 39 187 -21 733 137 0 21 chr12 84183289 84183478 -59602977 - L1PA16 LINE L1 -1 6165 5946 310 194 97 21 chr12 84183734 84183827 -59602628 - L1MA4 LINE L1 -68 6232 6133 918 182 6 0 chr12 84183827 84183986 -59602469 - AluJb SINE Alu -16 296 137 4274 139 45 43 chr12 84183987 84184761 -59601694 - L1MA4A LINE L1 -159 6144 5366 2019 139 0 0 chr12 84184761 84185055 -59601400 - AluSg SINE Alu -16 294 1 4274 139 45 43 chr12 84185055 84185140 -59601315 - L1MA4A LINE L1 -937 5366 5283 21 0 0 0 chr12 84185705 84185726 -59600729 + GC_rich Low_complexity Low_complexity 1 21 0 324 258 31 62 chr12 84185729 84185923 -59600532 - L1MA9 LINE L1 -164 6148 5961 233 324 97 42 chr12 84186763 84186979 -59599476 + L2 LINE L2 2215 2442 -872 529 317 111 0 chr12 84187243 84187442 -59599013 + MIR SINE MIR 11 231 -31 503 296 131 64 chr12 84187680 84188132 -59598323 - L2 LINE L2 -16 3297 2816 3298 46 72 0 chr12 84189060 84189492 -59596963 - L1PA8 LINE L1 0 6172 5710 226 258 101 0 chr12 84189564 84189653 -59596802 + L1ME LINE L1 5385 5482 -639 3258 19 0 0 chr12 84189755 84190131 -59596324 + L1PA3 LINE L1 5780 6155 0 3524 127 6 2 chr12 84190773 84191317 -59595138 + L1PB1 LINE L1 5606 6151 0 385 296 184 53 chr12 84191852 84192173 -59594282 + LTR16A LTR ERVL 35 397 -53 1593 106 51 16 chr12 84193955 84194210 -59592245 + L1PA10 LINE L1 5905 6168 0 385 358 8 0 chr12 84194538 84194658 -59591797 - MIR SINE MIR -131 131 11 733 245 213 11 chr12 84195034 84195320 -59591135 + HsTC2b DNA Tc2 29 372 -543 766 179 111 25 chr12 84195378 84195613 -59590842 + HsTC2b DNA Tc2 660 914 -4 2546 46 7 0 chr12 84196309 84196611 -59589844 + AluY SINE Alu 1 304 -7 750 42 0 0 chr12 84196697 84196793 -59589662 + AluY SINE Alu 209 304 -7 686 236 123 41 chr12 84197329 84197549 -59588906 - MIR SINE MIR 0 262 25 189 340 0 0 chr12 84197600 84197647 -59588808 - L2 LINE L2 -23 3249 3203 1068 278 75 36 chr12 84197878 84198411 -59588044 + MLT1L LTR MaLR 14 567 -48 201 261 0 0 chr12 84200754 84200800 -59585655 + MIR SINE MIR 15 60 -202 21 36 0 0 chr12 84201552 84201580 -59584875 + AT_rich Low_complexity Low_complexity 1 28 0 186 426 46 0 chr12 84201685 84201793 -59584662 + L2 LINE L2 3116 3228 -44 2103 101 0 0 chr12 84205106 84205422 -59581033 + AluSc SINE Alu 1 316 0 317 259 74 0 chr12 84205507 84205588 -59580867 + L2 LINE L2 3186 3272 0 376 162 27 14 chr12 84206920 84206994 -59579461 + MER5A DNA MER1_type 1 75 -114 627 140 30 0 chr12 84206995 84207095 -59579360 + FLAM_C SINE Alu 17 119 -24 213 39 0 0 chr12 84207095 84207121 -59579334 + (TAA)n Simple_repeat Simple_repeat 2 27 0 357 245 167 0 chr12 84207122 84207224 -59579231 + MER5A DNA MER1_type 71 189 0 714 210 35 7 chr12 84207848 84207991 -59578464 - FRAM SINE Alu -30 146 1 23 33 0 0 chr12 84210459 84210489 -59575966 + AT_rich Low_complexity Low_complexity 1 30 0 471 332 42 42 chr12 84211543 84211657 -59574798 + MIR SINE MIR 3 116 -146 2061 136 0 0 chr12 84211657 84211944 -59574511 - AluSx SINE Alu -19 293 7 471 332 42 42 chr12 84211944 84212088 -59574367 + MIR SINE MIR 115 261 -1 512 318 26 7 chr12 84212227 84212378 -59574077 - MIR SINE MIR -91 171 18 214 323 40 6 chr12 84212389 84212514 -59573941 - MIR SINE MIR -57 151 23 21 0 0 0 chr12 84213434 84213455 -59573000 + AT_rich Low_complexity Low_complexity 1 21 0 180 403 0 0 chr12 84214892 84214964 -59571491 + MIR SINE MIR 35 106 -102 195 329 29 0 chr12 84217056 84217126 -59569329 - MIR SINE MIR -159 103 32 * 230 330 11 21 chr12 84217123 84217217 -59569238 - MIR SINE MIR -102 160 68 1058 160 78 19 chr12 84218006 84218212 -59568243 - MER20 DNA MER1_type -1 218 1 262 274 118 20 chr12 84218405 84218507 -59567948 + L2 LINE L2 3192 3303 -10 256 387 93 0 chr12 84219179 84219458 -59566997 - L2 LINE L2 -1210 2104 1800 22 0 0 0 chr12 84220256 84220278 -59566177 + AT_rich Low_complexity Low_complexity 1 22 0 2541 118 4 105 chr12 84220305 84220390 -59566065 + MSTA LTR MaLR 1 93 -335 2463 110 8 5 chr12 84220390 84220764 -59565691 - THE1C LTR MaLR 0 375 1 2541 118 4 105 chr12 84220764 84221153 -59565302 + MSTA LTR MaLR 93 427 -1 23 33 0 0 chr12 84221318 84221348 -59565107 + AT_rich Low_complexity Low_complexity 1 30 0 935 265 65 10 chr12 84221396 84221687 -59564768 + L1MC4 LINE L1 5536 5842 -1966 926 112 0 0 chr12 84221852 84221977 -59564478 + AluSp SINE Alu 1 125 -188 575 169 6 0 chr12 84221995 84222172 -59564283 + (TA)n Simple_repeat Simple_repeat 2 179 0 204 188 0 0 chr12 84222193 84222262 -59564193 + (TA)n Simple_repeat Simple_repeat 1 69 0 327 304 0 0 chr12 84222262 84222354 -59564101 - L1MC4 LINE L1 -1337 6705 6614 186 128 0 0 chr12 84222357 84222396 -59564059 + (TA)n Simple_repeat Simple_repeat 1 39 0 349 289 0 0 chr12 84222398 84222488 -59563967 - L1MC4 LINE L1 -1339 6703 6614 288 138 0 0 chr12 84222491 84222556 -59563899 + (TA)n Simple_repeat Simple_repeat 2 66 0 331 273 23 0 chr12 84222558 84222646 -59563809 - L1MC4 LINE L1 -1339 6703 6614 669 131 238 0 chr12 84222657 84222813 -59563642 + AluSp SINE Alu 135 319 0 926 296 139 7 chr12 84222818 84223029 -59563426 + L1MC4 LINE L1 6488 6670 -1218 216 0 0 0 chr12 84223029 84223053 -59563402 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 926 296 139 7 chr12 84223053 84223431 -59563024 + L1MC4 LINE L1 6670 7243 -645 7872 11 1 0 chr12 84223480 84224522 -59561933 + L1HS LINE L1 5109 6151 -4 465 202 73 146 chr12 84224571 84224928 -59561527 + L1MC4 LINE L1 7705 8035 -7 2100 118 7 0 chr12 84225267 84225563 -59560892 - AluSq SINE Alu -15 298 1 23 33 0 0 chr12 84225640 84225670 -59560785 + AT_rich Low_complexity Low_complexity 1 30 0 184 358 46 18 chr12 84227737 84227846 -59558609 + L2 LINE L2 1168 1279 -2035 333 0 0 0 chr12 84228565 84228602 -59557853 + (T)n Simple_repeat Simple_repeat 1 37 0 773 285 23 62 chr12 84229622 84229882 -59556573 - MIR SINE MIR 0 262 13 6316 87 11 4 chr12 84230117 84231874 -59554581 + L1PA13 LINE L1 4391 6161 -2 25 31 0 0 chr12 84233013 84233045 -59553410 + AT_rich Low_complexity Low_complexity 1 32 0 184 196 0 65 chr12 84233127 84233173 -59553282 - MER5A DNA MER1_type -25 164 122 336 224 94 24 chr12 84233192 84233330 -59553125 - MIR SINE MIR -14 248 100 1835 137 3 82 chr12 84233452 84233818 -59552637 + MER1B DNA MER1_type 1 337 0 250 279 77 58 chr12 84234620 84234724 -59551731 - MIR SINE MIR -83 179 74 251 254 56 0 chr12 84234825 84234896 -59551559 - MIR SINE MIR -51 211 137 26 0 0 0 chr12 84234995 84235021 -59551434 + AT_rich Low_complexity Low_complexity 1 26 0 295 342 118 43 chr12 84235988 84236362 -59550093 + L2 LINE L2 2011 2412 -902 2537 50 0 0 chr12 84236489 84236792 -59549663 - AluY SINE Alu -8 303 1 453 360 16 33 chr12 84237049 84237291 -59549164 - MIR SINE MIR -20 242 5 202 301 176 66 chr12 84237360 84237815 -59548640 + L2 LINE L2 2808 3312 -1 21 57 0 0 chr12 84238731 84238766 -59547689 + AT_rich Low_complexity Low_complexity 1 35 0 564 306 111 0 chr12 84239271 84239470 -59546985 + MIR SINE MIR 11 231 -31 529 297 131 62 chr12 84239707 84240158 -59546297 - L2 LINE L2 -16 3297 2816 38 51 0 0 chr12 84240423 84240482 -59545973 + AT_rich Low_complexity Low_complexity 1 59 0 1323 226 56 0 chr12 84240482 84240752 -59545703 - AluJb SINE Alu -27 285 1 2198 161 46 38 chr12 84240757 84241254 -59545201 - L1MB3 LINE L1 -8 6175 5675 22 99 0 0 chr12 84241312 84241383 -59545072 + AT_rich Low_complexity Low_complexity 1 71 0 337 182 162 91 chr12 84241686 84241840 -59544615 - L1ME4a LINE L1 -1 6120 5956 187 149 21 21 chr12 84241888 84241935 -59544520 + CT-rich Low_complexity Low_complexity 3 49 0 619 237 84 32 chr12 84242033 84242282 -59544173 + MIR SINE MIR 1 262 0 198 304 163 0 chr12 84242439 84242531 -59543924 - MER5A DNA MER1_type -2 187 81 23 0 0 0 chr12 84242945 84242968 -59543487 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 84244993 84245017 -59541438 + AT_rich Low_complexity Low_complexity 1 24 0 296 353 83 25 chr12 84245688 84245892 -59540563 + L2 LINE L2 2872 3087 -185 1155 216 78 126 chr12 84245984 84246609 -59539846 + LTR49 LTR ERV1 1 595 0 450 214 39 102 chr12 84246625 84246831 -59539624 + LTR49-int LTR ERV1 14 206 -6125 461 277 75 93 chr12 84246900 84247276 -59539179 + LTR49-int LTR ERV1 1009 1377 -4954 841 241 75 26 chr12 84247805 84248126 -59538329 + LTR49-int LTR ERV1 968 1371 -3565 8232 194 83 66 chr12 84248170 84251092 -59535363 + LTR49-int LTR ERV1 1552 6117 -214 1023 211 100 103 chr12 84251234 84251825 -59534630 + LTR49 LTR ERV1 5 593 -2 228 67 0 0 chr12 84252865 84252895 -59533560 + (T)n Simple_repeat Simple_repeat 1 30 0 299 313 176 8 chr12 84252903 84253034 -59533421 - L2 LINE L2 -9 3263 3111 825 261 198 48 chr12 84253383 84253598 -59532857 + L2 LINE L2 2338 2520 -794 501 17 0 0 chr12 84253598 84253656 -59532799 + (CA)n Simple_repeat Simple_repeat 1 58 0 825 261 198 48 chr12 84253656 84253916 -59532539 + L2 LINE L2 2520 2884 -430 336 126 39 126 chr12 84254013 84254116 -59532339 + LTR48 LTR ERV1 692 785 -2 372 318 33 7 chr12 84254218 84254369 -59532086 - MIR SINE MIR 0 262 108 189 77 0 0 chr12 84254370 84254396 -59532059 + L2 LINE L2 3277 3302 -11 493 299 91 77 chr12 84254653 84254927 -59531528 + L2 LINE L2 2995 3272 0 195 42 0 0 chr12 84256199 84256223 -59530232 + (ATG)n Simple_repeat Simple_repeat 1 24 0 436 272 179 17 chr12 84256243 84256416 -59530039 - MIR SINE MIR -14 248 48 336 291 20 73 chr12 84256663 84256814 -59529641 - MIR3 SINE MIR -49 159 17 640 156 9 0 chr12 84257014 84257123 -59529332 + Tigger4(Zombi) DNA MER2_type 2 111 -2620 * 2778 116 7 5 chr12 84257118 84257542 -59528913 + Tigger4(Zombi) DNA MER2_type 2307 2731 0 192 316 35 0 chr12 84257895 84257952 -59528503 + MIR SINE MIR 92 150 -58 191 343 148 47 chr12 84258133 84258302 -59528153 - MIR SINE MIR -7 255 70 340 395 29 11 chr12 84258872 84259153 -59527302 - L1ME LINE L1 -389 5773 5488 22 35 0 0 chr12 84259297 84259326 -59527129 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 84259434 84259469 -59526986 + AT_rich Low_complexity Low_complexity 1 35 0 407 270 48 85 chr12 84259761 84260009 -59526446 + L2 LINE L2 3075 3313 0 23 33 0 0 chr12 84260163 84260193 -59526262 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr12 84260404 84260447 -59526008 + AT_rich Low_complexity Low_complexity 1 43 0 1801 146 17 7 chr12 84260716 84261011 -59525444 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr12 84262675 84262696 -59523759 + AT_rich Low_complexity Low_complexity 1 21 0 1394 96 32 5 chr12 84263645 84263864 -59522591 + L1PA11 LINE L1 5948 6172 -2 364 299 56 56 chr12 84263961 84264195 -59522260 - MIR SINE MIR -14 248 15 22 56 0 0 chr12 84264467 84264503 -59521952 + AT_rich Low_complexity Low_complexity 1 36 0 1161 96 0 138 chr12 84265518 84265736 -59520719 - AluSc SINE Alu -121 188 1 894 231 94 86 chr12 84265998 84266484 -59519971 + MER39 LTR ERV1 5 707 0 325 321 131 0 chr12 84266696 84266833 -59519622 - MIR3 SINE MIR 0 208 54 200 140 0 80 chr12 84268560 84268610 -59517845 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 515 287 89 43 chr12 84268706 84269030 -59517425 + L2 LINE L2 2851 3189 -124 454 163 12 0 chr12 84269049 84269129 -59517326 + MER53 DNA DNA 15 95 -94 906 163 6 31 chr12 84269130 84269290 -59517165 + FRAM SINE Alu 2 157 -19 347 141 0 0 chr12 84269390 84269454 -59517001 + MER53 DNA DNA 89 152 -37 471 224 0 109 chr12 84269478 84269625 -59516830 + L2 LINE L2 3183 3313 0 1499 237 81 14 chr12 84270447 84270869 -59515586 + MLT1C LTR MaLR 1 450 -17 268 308 75 47 chr12 84271010 84271117 -59515338 + L2 LINE L2 3143 3252 -20 26 0 0 0 chr12 84271131 84271157 -59515298 + AT_rich Low_complexity Low_complexity 1 26 0 1194 199 9 0 chr12 84271501 84271727 -59514728 - L1PA16 LINE L1 0 6166 5939 37 39 0 0 chr12 84272806 84272857 -59513598 + AT_rich Low_complexity Low_complexity 1 51 0 684 174 0 0 chr12 84273553 84273662 -59512793 - FLAM_C SINE Alu -33 110 2 201 327 99 0 chr12 84275660 84275761 -59510694 - MIR SINE MIR -14 248 138 23 0 0 0 chr12 84275893 84275916 -59510539 + AT_rich Low_complexity Low_complexity 1 23 0 198 256 0 0 chr12 84276290 84276368 -59510087 + (TG)n Simple_repeat Simple_repeat 1 78 0 204 97 0 0 chr12 84276969 84277000 -59509455 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 1541 151 3 64 chr12 84277000 84277298 -59509157 - AluJb SINE Alu -26 286 7 672 13 0 0 chr12 84277395 84277472 -59508983 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 236 30 30 0 chr12 84277563 84277596 -59508859 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 239 18 9 chr12 84278113 84278226 -59508229 + CT-rich Low_complexity Low_complexity 4 117 0 541 250 88 6 chr12 84279427 84279587 -59506868 + MIR SINE MIR 90 262 0 449 263 143 6 chr12 84280872 84281051 -59505404 + MIR SINE MIR 3 204 -58 2445 143 31 0 chr12 84281676 84282096 -59504359 + L1MB3 LINE L1 5751 6183 0 329 355 54 6 chr12 84282389 84282555 -59503900 + MIR SINE MIR 1 174 -88 2752 88 6 0 chr12 84283084 84283446 -59503009 + THE1B LTR MaLR 1 364 0 1461 80 0 20 chr12 84284489 84284688 -59501767 - MER107 DNA MER1_type -2 195 1 23 0 0 0 chr12 84285654 84285677 -59500778 + AT_rich Low_complexity Low_complexity 1 23 0 1809 179 52 0 chr12 84286189 84286519 -59499936 - MER7A DNA MER2_type 0 346 2 24 0 0 0 chr12 84286543 84286567 -59499888 + AT_rich Low_complexity Low_complexity 1 24 0 306 328 111 6 chr12 84286643 84286814 -59499641 - MIR SINE MIR -26 236 48 320 333 123 0 chr12 84287272 84287386 -59499069 - MIR SINE MIR -130 132 5 267 336 100 0 chr12 84287664 84287774 -59498681 + L2 LINE L2 3193 3313 0 286 295 155 26 chr12 84288208 84288401 -59498054 + MIR SINE MIR 35 252 -10 82 72 0 0 chr12 84288710 84288876 -59497579 + AT_rich Low_complexity Low_complexity 1 166 0 7363 38 8 0 chr12 84288876 84290132 -59496323 - L1PA4 LINE L1 -3 6152 4893 3950 34 0 0 chr12 84290132 84290605 -59495850 + L1PA4 LINE L1 4424 4896 -1250 22 35 0 0 chr12 84290605 84290634 -59495821 + AT_rich Low_complexity Low_complexity 1 29 0 198 205 0 26 chr12 84290966 84291083 -59495372 + (TA)n Simple_repeat Simple_repeat 1 114 0 222 289 34 134 chr12 84291333 84291482 -59494973 + MIR3 SINE MIR 52 185 -23 2222 139 20 42 chr12 84291962 84292364 -59494091 + Tigger2a DNA MER2_type 2 394 -40 21 0 0 0 chr12 84293891 84293912 -59492543 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr12 84295122 84295177 -59491278 + AT_rich Low_complexity Low_complexity 1 55 0 318 273 0 0 chr12 84295605 84295693 -59490762 + (TA)n Simple_repeat Simple_repeat 2 89 0 42620 34 21 0 chr12 84296710 84302734 -59483721 + L1PA2 LINE L1 3 6155 0 36 0 0 0 chr12 84302734 84302770 -59483685 + AT_rich Low_complexity Low_complexity 1 36 0 504 206 28 78 chr12 84303929 84304070 -59482385 + L1MC4 LINE L1 7631 7764 -278 302 227 30 11 chr12 84304104 84304191 -59482264 + L1MCa LINE L1 1990 6981 -1341 286 237 30 92 chr12 84304194 84304325 -59482130 + L1MC4 LINE L1 7907 8029 -13 206 222 0 22 chr12 84305272 84305317 -59481138 + MIR SINE MIR 206 249 -13 471 285 7 29 chr12 84305352 84305489 -59480966 + MIR3 SINE MIR 54 187 -21 236 302 31 44 chr12 84305934 84306093 -59480362 + G-rich Low_complexity Low_complexity 1 157 0 22 0 0 0 chr12 84306122 84306144 -59480311 + GC_rich Low_complexity Low_complexity 1 22 0 318 284 49 10 chr12 84307679 84307781 -59478674 + MIR SINE MIR 65 170 -92 252 200 0 67 chr12 84309824 84309884 -59476571 + L2 LINE L2 3246 3301 -12 21 36 0 0 chr12 84311248 84311276 -59475179 + AT_rich Low_complexity Low_complexity 1 28 0 213 345 18 45 chr12 84311483 84311593 -59474862 + L3 LINE CR1 438 544 -1033 299 326 163 20 chr12 84312265 84312461 -59473994 + MIR SINE MIR 20 243 -19 1021 287 59 47 chr12 84313100 84313522 -59472933 + L3 LINE CR1 801 1227 -350 497 274 200 49 chr12 84313554 84314003 -59472452 + Charlie8 DNA MER1_type 29 545 -1872 354 211 21 23 chr12 84314157 84314259 -59472196 + MIR SINE MIR 42 152 -56 1831 151 14 63 chr12 84314375 84314661 -59471794 - MER7A DNA MER2_type -2693 345 81 1632 173 3 27 chr12 84314661 84314956 -59471499 - AluJo SINE Alu -24 288 1 1831 151 14 63 chr12 84314956 84315033 -59471422 - MER7A DNA MER2_type -2957 81 2 420 345 61 27 chr12 84315049 84315345 -59471110 + L2 LINE L2 2125 2430 -884 416 318 108 39 chr12 84315463 84315900 -59470555 + L2 LINE L2 2156 2622 -692 24 53 0 0 chr12 84316251 84316289 -59470166 + AT_rich Low_complexity Low_complexity 1 38 0 218 308 131 9 chr12 84319619 84319726 -59466729 - L2 LINE L2 -1 3312 3193 215 209 55 11 chr12 84320659 84320750 -59465705 + (TA)n Simple_repeat Simple_repeat 2 96 0 413 319 37 67 chr12 84320864 84321134 -59465321 - L2 LINE L2 -170 3143 2882 1200 153 14 14 chr12 84321152 84321374 -59465081 - L1M2 LINE L1 -666 5646 5425 891 142 14 0 chr12 84321372 84321520 -59464935 + L1M2 LINE L1 5644 5793 -519 * 300 130 43 0 chr12 84321520 84321589 -59464866 + (TA)n Simple_repeat Simple_repeat 1 72 0 22 35 0 0 chr12 84322099 84322128 -59464327 + AT_rich Low_complexity Low_complexity 1 29 0 246 176 54 14 chr12 84322547 84322621 -59463834 + L1MC4 LINE L1 6613 6689 -1353 303 303 33 25 chr12 84323528 84323650 -59462805 + L2 LINE L2 3191 3313 0 990 224 17 35 chr12 84324218 84324404 -59462051 + L1MC4 LINE L1 7742 7923 -119 231 36 0 0 chr12 84324404 84324432 -59462023 + (GA)n Simple_repeat Simple_repeat 1 28 0 990 224 17 35 chr12 84324432 84324535 -59461920 + L1MC4 LINE L1 7923 8026 -16 27 29 0 0 chr12 84324579 84324613 -59461842 + AT_rich Low_complexity Low_complexity 1 34 0 1309 218 128 15 chr12 84325400 84325867 -59460588 - Charlie1b DNA MER1_type -3 520 1 259 361 17 17 chr12 84325889 84326008 -59460447 + MIR SINE MIR 32 150 -112 24 0 0 0 chr12 84326321 84326345 -59460110 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr12 84328502 84328522 -59457933 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 424 342 51 15 chr12 84329205 84329401 -59457054 - MIR SINE MIR -3 259 57 3760 20 5 0 chr12 84329707 84330153 -59456302 - L1PA4 LINE L1 -1 6154 5707 273 441 68 12 chr12 84330811 84330972 -59455483 + L2 LINE L2 3100 3269 -3 345 299 19 19 chr12 84332264 84332371 -59454084 + MIR SINE MIR 58 164 -98 6987 21 3 0 chr12 84332990 84333806 -59452649 - L1PA3 LINE L1 -3 6152 5334 2257 95 10 0 chr12 84334060 84334366 -59452089 - AluSc SINE Alu 0 309 1 410 321 89 82 chr12 84334904 84335318 -59451137 - L2 LINE L2 0 3272 2856 2141 123 0 0 chr12 84336062 84336362 -59450093 - AluSx SINE Alu -12 300 1 316 343 10 0 chr12 84336440 84336539 -59449916 - MER5B DNA MER1_type -29 149 50 205 320 144 32 chr12 84336873 84336998 -59449457 + L2 LINE L2 3175 3313 0 206 321 0 0 chr12 84337195 84337251 -59449204 + L2 LINE L2 2539 2594 -720 500 294 46 12 chr12 84338507 84338715 -59447740 + MIR SINE MIR 31 246 -16 1034 317 91 18 chr12 84339507 84340325 -59446130 + L2 LINE L2 2435 3312 -1 542 319 27 43 chr12 84342619 84342876 -59443579 - MIR SINE MIR 0 262 10 23 0 0 0 chr12 84342890 84342913 -59443542 + AT_rich Low_complexity Low_complexity 1 23 0 462 267 152 0 chr12 84343365 84343530 -59442925 + MIR SINE MIR 66 255 -7 24 32 0 0 chr12 84343947 84343978 -59442477 + AT_rich Low_complexity Low_complexity 1 31 0 2028 137 3 19 chr12 84347613 84347926 -59438529 + AluSq SINE Alu 1 308 -5 587 352 34 0 chr12 84349358 84349591 -59436864 - MIR SINE MIR -10 252 12 290 275 42 50 chr12 84349662 84349782 -59436673 - L2 LINE L2 -4 3268 3150 680 240 17 6 chr12 84352841 84353016 -59433439 + MER5B DNA MER1_type 2 178 0 2228 93 3 3 chr12 84353195 84353495 -59432960 + AluSg SINE Alu 1 300 -10 267 173 0 0 chr12 84353524 84353576 -59432879 + A-rich Low_complexity Low_complexity 1 52 0 203 239 91 57 chr12 84354083 84354171 -59432284 + L2 LINE L2 3180 3270 -2 377 178 27 14 chr12 84354280 84354353 -59432102 - MER116 DNA Mariner 0 80 7 564 269 75 25 chr12 84355413 84355614 -59430841 + MER112 DNA MER1_type 7 217 -43 278 246 39 129 chr12 84358309 84358565 -59427890 + MLT1L LTR MaLR 173 405 -210 22 35 0 0 chr12 84358671 84358700 -59427755 + AT_rich Low_complexity Low_complexity 1 29 0 1383 329 116 24 chr12 84358748 84359619 -59426836 + L2 LINE L2 2232 3182 -131 588 247 0 59 chr12 84359748 84359918 -59426537 + L2 LINE L2 3154 3313 0 1079 212 4 4 chr12 84360091 84360317 -59426138 - L1M4 LINE L1 -2401 3745 3520 201 303 92 0 chr12 84360430 84360506 -59425949 - L2 LINE L2 -480 2834 2752 251 215 108 0 chr12 84360889 84360954 -59425501 - MARNA DNA Mariner -383 203 132 29 28 0 0 chr12 84361490 84361526 -59424929 + AT_rich Low_complexity Low_complexity 1 36 0 278 104 0 0 chr12 84363475 84363532 -59422923 - L1 LINE L1 -846 5300 5244 297 173 0 80 chr12 84365009 84365084 -59421371 + L2 LINE L2 3154 3222 -91 217 200 18 36 chr12 84366241 84366296 -59420159 + L2 LINE L2 3259 3312 -1 2125 114 7 0 chr12 84366614 84366912 -59419543 + AluSp SINE Alu 11 310 -3 27 29 0 0 chr12 84368306 84368340 -59418115 + AT_rich Low_complexity Low_complexity 1 34 0 346 240 80 48 chr12 84368522 84368647 -59417808 - MER5B DNA MER1_type 0 178 50 251 229 21 62 chr12 84370858 84370954 -59415501 + CT-rich Low_complexity Low_complexity 3 94 0 27 0 0 0 chr12 84371276 84371303 -59415152 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr12 84371870 84371897 -59414558 + AT_rich Low_complexity Low_complexity 1 27 0 192 380 50 0 chr12 84372585 84372685 -59413770 - L2 LINE L2 -1 3312 3208 21 0 0 0 chr12 84373413 84373434 -59413021 + GC_rich Low_complexity Low_complexity 1 21 0 898 229 108 9 chr12 84374938 84375161 -59411294 + MIR SINE MIR 18 262 0 426 248 19 9 chr12 84375563 84375668 -59410787 - MER69 DNA AcHobo -1 2525 2420 487 261 178 45 chr12 84375687 84375974 -59410481 - MER69 DNA AcHobo -819 407 83 560 246 142 22 chr12 84376877 84377060 -59409395 + MIR SINE MIR 45 249 -13 1685 173 112 0 chr12 84377561 84377874 -59408581 - MER7A DNA MER2_type 0 346 1 273 333 20 29 chr12 84378633 84378735 -59407720 - MIR SINE MIR -70 192 92 317 294 15 114 chr12 84380132 84380333 -59406122 + MER5A DNA MER1_type 7 187 -2 232 315 34 0 chr12 84381283 84381372 -59405083 - L2 LINE L2 0 3272 3181 980 213 5 19 chr12 84381384 84381591 -59404864 - MIR SINE MIR -31 231 28 1771 156 0 33 chr12 84383650 84383957 -59402498 + AluJo SINE Alu 1 297 -15 223 239 70 42 chr12 84384089 84384160 -59402295 + L2 LINE L2 3150 3222 -50 309 306 83 0 chr12 84385415 84385572 -59400883 - L1MC4a LINE L1 -1886 5922 5753 309 223 58 16 chr12 84385588 84385709 -59400746 + L1M4 LINE L1 4457 4582 -1564 276 263 173 7 chr12 84386865 84387004 -59399451 + MIR SINE MIR 98 259 -3 477 0 0 0 chr12 84387102 84387155 -59399300 + (TG)n Simple_repeat Simple_repeat 2 54 0 7541 25 0 0 chr12 84388118 84389204 -59397251 - L1PA3 LINE L1 -7 6148 5055 1606 172 52 14 chr12 84389406 84389697 -59396758 + AluJb SINE Alu 1 302 -10 646 321 114 14 chr12 84390324 84390614 -59395841 + L3 LINE CR1 1031 1349 -228 2018 108 3 3 chr12 84390687 84390974 -59395481 + AluY SINE Alu 1 287 -24 408 310 47 47 chr12 84391261 84391474 -59394981 - MIR SINE MIR -36 226 14 192 293 27 27 chr12 84392387 84392462 -59393993 + L2 LINE L2 3234 3308 -5 251 270 0 0 chr12 84392505 84392568 -59393887 + (AATTG)n Simple_repeat Simple_repeat 5 67 0 365 292 96 0 chr12 84393648 84393826 -59392629 - Charlie7 DNA MER1_type -225 2387 2193 1168 286 80 6 chr12 84393967 84394443 -59392012 - Charlie7 DNA MER1_type -2036 576 66 1465 190 53 16 chr12 84395089 84395410 -59391045 - MER58B DNA MER1_type -1 340 8 358 296 151 38 chr12 84395727 84395886 -59390569 + MIR SINE MIR 23 201 -7 4437 58 2 0 chr12 84396339 84396892 -59389563 - MER41A LTR ERV1 0 554 1 316 189 0 0 chr12 84397216 84397269 -59389186 - L2 LINE L2 0 3313 3261 2111 84 0 0 chr12 84397304 84397593 -59388862 - AluY SINE Alu 0 311 23 297 269 9 46 chr12 84398000 84398108 -59388347 - L2 LINE L2 -924 2390 2287 313 280 40 30 chr12 84400094 84400194 -59386261 - MIR SINE MIR -128 134 34 1227 175 74 61 chr12 84400593 84400890 -59385565 - AluJo SINE Alu 0 302 2 243 286 48 0 chr12 84401177 84401261 -59385194 - MIR SINE MIR -48 214 127 1620 170 39 22 chr12 84403304 84403615 -59382840 - MER7A DNA MER2_type -20 326 13 2209 114 7 0 chr12 84405192 84405489 -59380966 - AluSx SINE Alu -11 301 3 207 0 0 0 chr12 84405931 84405954 -59380501 + (TTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr12 84406422 84406445 -59380010 + AT_rich Low_complexity Low_complexity 1 23 0 1762 64 4 0 chr12 84406558 84406791 -59379664 - L1PA7 LINE L1 -2 6152 5919 304 353 82 0 chr12 84407578 84407700 -59378755 + MIR3 SINE MIR 49 180 -28 1574 180 0 51 chr12 84408617 84408933 -59377522 + AluJb SINE Alu 1 300 -12 723 297 81 5 chr12 84409634 84409856 -59376599 - MIR SINE MIR -12 250 12 2458 69 0 3 chr12 84410131 84410437 -59376018 - AluY SINE Alu -6 305 1 306 292 88 0 chr12 84410437 84410574 -59375881 - L1MC/D LINE L1 -2076 5732 5584 943 239 249 30 chr12 84410598 84411205 -59375250 - HAL1 LINE L1 0 2507 1768 219 273 0 45 chr12 84411231 84411297 -59375158 + MIR SINE MIR 73 135 -73 415 253 82 41 chr12 84411357 84411527 -59374928 - MER5B DNA MER1_type 0 178 2 6994 57 10 0 chr12 84413009 84414049 -59372406 - L1PA6 LINE L1 0 6154 5113 23 33 0 0 chr12 84415194 84415224 -59371231 + AT_rich Low_complexity Low_complexity 1 30 0 2070 136 3 0 chr12 84415416 84415724 -59370731 - AluSx SINE Alu -3 309 1 842 154 15 0 chr12 84415762 84415892 -59370563 - FLAM_C SINE Alu -11 132 1 36 40 0 0 chr12 84416539 84416589 -59369866 + AT_rich Low_complexity Low_complexity 1 50 0 364 260 89 41 chr12 84416590 84416736 -59369719 - MER5B DNA MER1_type 0 178 26 703 308 92 39 chr12 84416936 84417435 -59369020 - L2 LINE L2 -10 3303 2738 1856 141 13 7 chr12 84417435 84417733 -59368722 - AluJb SINE Alu -12 300 1 703 308 92 39 chr12 84417733 84417838 -59368617 - L2 LINE L2 -575 2738 2640 23 0 0 0 chr12 84419659 84419682 -59366773 + AT_rich Low_complexity Low_complexity 1 23 0 590 120 22 0 chr12 84419815 84419907 -59366548 - FLAM_C SINE Alu -39 104 11 1142 148 39 127 chr12 84421159 84421442 -59365013 - MLT2D LTR ERVL -2 412 155 830 156 21 0 chr12 84421423 84421564 -59364891 - MLT1B LTR MaLR -244 146 3 * 192 40 0 0 chr12 84421605 84421630 -59364825 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 789 239 44 0 chr12 84421667 84421847 -59364608 + MER5A DNA MER1_type 1 188 -1 21 36 0 0 chr12 84423334 84423362 -59363093 + AT_rich Low_complexity Low_complexity 1 28 0 255 289 26 35 chr12 84423421 84423535 -59362920 - L2 LINE L2 -6 3266 3154 579 254 80 47 chr12 84423562 84423838 -59362617 - MLT1L LTR MaLR -4 611 327 831 248 66 4 chr12 84424604 84424830 -59361625 + MIR SINE MIR 23 262 0 603 279 50 25 chr12 84424875 84425076 -59361379 + MIR SINE MIR 31 236 -26 611 216 120 0 chr12 84426265 84426432 -59360023 - MER5A DNA MER1_type -1 188 2 183 245 163 20 chr12 84426813 84426911 -59359544 + MIR SINE MIR 87 198 -64 1019 174 0 11 chr12 84427825 84428003 -59358452 + FRAM SINE Alu 1 176 0 1318 191 14 48 chr12 84429291 84429430 -59357025 + AluJo SINE Alu 1 126 -186 180 26 26 51 chr12 84429430 84429469 -59356986 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1318 191 14 48 chr12 84429469 84429623 -59356832 + AluJo SINE Alu 126 284 -28 443 246 216 39 chr12 84431097 84431329 -59355126 - MER69 DNA AcHobo -871 355 83 219 139 0 0 chr12 84432834 84432870 -59353585 + (T)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr12 84433318 84433341 -59353114 + AT_rich Low_complexity Low_complexity 1 23 0 1213 108 0 75 chr12 84434489 84434702 -59351753 + MER107 DNA MER1_type 1 197 0 785 244 66 26 chr12 84435177 84435596 -59350859 - MLT1J LTR MaLR -38 473 18 380 296 104 9 chr12 84435769 84436097 -59350358 - L1ME4a LINE L1 -14 6107 5749 272 156 0 0 chr12 84436123 84436168 -59350287 + MER50 LTR ERV1 1 45 -689 * 3401 137 27 24 chr12 84436150 84436747 -59349708 - MER50 LTR ERV1 -135 599 1 348 261 150 29 chr12 84436768 84437075 -59349380 - L1ME4a LINE L1 -392 5729 5386 216 67 0 0 chr12 84438477 84438507 -59347948 + (TG)n Simple_repeat Simple_repeat 2 31 0 221 245 61 0 chr12 84439043 84439092 -59347363 - L2 LINE L2 -64 3208 3157 260 221 13 26 chr12 84439172 84439249 -59347206 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 393 329 40 4 chr12 84439684 84439912 -59346543 - L1MC/D LINE L1 -1997 5811 5576 261 302 104 58 chr12 84441484 84441792 -59344663 + L2 LINE L2 2512 2833 -481 346 260 0 0 chr12 84442008 84442081 -59344374 - MER5A DNA MER1_type -78 111 39 652 236 17 22 chr12 84442961 84443139 -59343316 + MER5B DNA MER1_type 2 178 0 335 268 238 20 chr12 84444037 84444458 -59341997 - L1MD2 LINE L1 -411 5948 5448 266 204 0 0 chr12 84445747 84445796 -59340659 - HAL1b LINE L1 -901 447 399 195 114 0 0 chr12 84445815 84445850 -59340605 + (T)n Simple_repeat Simple_repeat 1 35 0 540 266 85 21 chr12 84445881 84446163 -59340292 - HAL1b LINE L1 -966 382 83 180 0 0 0 chr12 84446802 84446822 -59339633 + (TC)n Simple_repeat Simple_repeat 2 21 0 337 242 24 57 chr12 84446917 84447041 -59339414 - L2 LINE L2 -6 3307 3188 665 249 60 70 chr12 84448757 84449154 -59337301 + MLT1L LTR MaLR 219 611 -4 778 210 14 0 chr12 84449224 84449367 -59337088 + FRAM SINE Alu 1 145 -31 204 40 0 0 chr12 84449367 84449392 -59337063 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2329 116 0 0 chr12 84449643 84449946 -59336509 - AluSg SINE Alu -7 303 1 2367 267 115 27 chr12 84450802 84450976 -59335479 - L2 LINE L2 -19 3294 3137 2035 104 4 0 chr12 84450976 84451244 -59335211 + AluSx SINE Alu 38 306 -6 2367 267 115 27 chr12 84451244 84452061 -59334394 - L2 LINE L2 -176 3137 2393 1655 157 3 31 chr12 84452061 84452348 -59334107 + AluJo SINE Alu 1 279 -33 242 28 0 28 chr12 84452348 84452384 -59334071 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2367 267 115 27 chr12 84452384 84452464 -59333991 - L2 LINE L2 -919 2394 2115 1965 160 0 3 chr12 84452470 84452776 -59333679 + AluJb SINE Alu 1 305 -7 404 108 14 162 chr12 84452865 84453012 -59333443 - MER33 DNA MER1_type -1 323 199 1377 180 59 5 chr12 84453012 84453453 -59333002 + MLT1D LTR MaLR 1 503 -2 751 221 35 10 chr12 84453454 84453653 -59332802 - MER33 DNA MER1_type -120 204 1 1802 158 36 61 chr12 84453707 84454119 -59332336 + MLT2D LTR ERVL 1 402 -12 1874 178 10 47 chr12 84454493 84454898 -59331557 - MLT1B LTR MaLR 0 390 1 514 205 48 48 chr12 84455996 84456162 -59330293 + MER58C DNA MER1_type 45 210 -5 1115 185 235 39 chr12 84456219 84456821 -59329634 - SATR1 Satellite Satellite -2 720 1 546 237 211 0 chr12 84456847 84457037 -59329418 - SATR1 Satellite Satellite -96 374 145 1179 177 279 0 chr12 84457050 84457553 -59328902 - SATR1 Satellite Satellite -144 643 1 1302 207 245 27 chr12 84457571 84460537 -59325918 - SATR1 Satellite Satellite -144 3614 1 2001 181 118 20 chr12 84460587 84462136 -59324319 - SATR1 Satellite Satellite 0 1700 1 2283 152 103 13 chr12 84462161 84463652 -59322803 - SATR1 Satellite Satellite 0 1625 1 2349 155 104 26 chr12 84463682 84465819 -59320636 - SATR1 Satellite Satellite -217 2303 1 2209 170 108 10 chr12 84465843 84469268 -59317187 - SATR1 Satellite Satellite 0 3758 1 989 223 284 0 chr12 84469299 84470353 -59316102 - SATR1 Satellite Satellite -146 1353 1 1026 211 276 14 chr12 84470379 84470971 -59315484 - SATR1 Satellite Satellite -51 747 1 930 218 185 58 chr12 84470982 84471377 -59315078 - SATR1 Satellite Satellite -2 468 24 1118 206 219 46 chr12 84471480 84473024 -59313431 - SATR1 Satellite Satellite -2 1811 1 952 196 286 30 chr12 84473054 84473421 -59313034 - SATR1 Satellite Satellite -3 467 7 1163 189 260 0 chr12 84473445 84474068 -59312387 - SATR1 Satellite Satellite -146 784 1 1147 205 190 49 chr12 84474110 84474759 -59311696 - SATR1 Satellite Satellite -144 740 1 1265 189 193 70 chr12 84474772 84475929 -59310526 - SATR1 Satellite Satellite -50 1299 1 1067 219 243 10 chr12 84475963 84476796 -59309659 - SATR1 Satellite Satellite -1 1027 1 1005 214 135 103 chr12 84476832 84477695 -59308760 - SATR1 Satellite Satellite -3 890 1 521 217 251 38 chr12 84477743 84478006 -59308449 + SATR1 Satellite Satellite 151 469 -1 447 174 12 0 chr12 84478059 84478145 -59308310 - SATR1 Satellite Satellite -158 312 226 248 116 23 0 chr12 84478162 84478205 -59308250 + Alu SINE Alu 250 293 -9 469 346 69 41 chr12 84478505 84478898 -59307557 + MLT1K LTR MaLR 132 535 -53 231 283 123 36 chr12 84479797 84479935 -59306520 + LTR33 LTR ERVL 35 184 -337 329 254 169 11 chr12 84480108 84480285 -59306170 + LTR33A LTR ERVL 299 503 -20 194 360 45 11 chr12 84480755 84480844 -59305611 + L2 LINE L2 2968 3059 -213 598 272 62 23 chr12 84480858 84481240 -59305215 - LTR16A LTR ERVL 0 450 16 2426 84 0 0 chr12 84481283 84481592 -59304863 + AluSc SINE Alu 1 309 0 21 0 0 0 chr12 84484010 84484031 -59302424 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr12 84484223 84484258 -59302197 + (CA)n Simple_repeat Simple_repeat 1 35 0 406 268 234 14 chr12 84485406 84485615 -59300840 - MIR SINE MIR -2 260 6 206 308 0 0 chr12 84485898 84485950 -59300505 - L2 LINE L2 0 3272 3221 598 205 97 26 chr12 84487615 84487810 -59298645 - MER3 DNA MER1_type 0 209 1 277 252 185 25 chr12 84487918 84488037 -59298418 - MIR SINE MIR -12 250 113 * 376 257 0 29 chr12 84488025 84488130 -59298325 + MIR SINE MIR 112 213 -49 396 0 0 0 chr12 84488147 84488191 -59298264 + (TA)n Simple_repeat Simple_repeat 2 45 0 209 109 62 0 chr12 84488245 84488309 -59298146 + (TA)n Simple_repeat Simple_repeat 1 68 0 3654 101 31 2 chr12 84488436 84489008 -59297447 + L1MA5A LINE L1 5707 6295 -2 29 60 0 0 chr12 84490218 84490268 -59296187 + AT_rich Low_complexity Low_complexity 1 50 0 283 241 0 35 chr12 84490443 84490530 -59295925 + MER63 DNA MER1_type 978 1061 0 180 111 0 0 chr12 84490573 84490600 -59295855 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 425 274 51 89 chr12 84490604 84490976 -59295479 - L2 LINE L2 -16 3297 2940 262 253 24 36 chr12 84491362 84491445 -59295010 - MIR3 SINE MIR -18 190 109 341 209 173 18 chr12 84491469 84491579 -59294876 + L2 LINE L2 3186 3312 -1 607 274 171 20 chr12 84492226 84492493 -59293962 - L2 LINE L2 -227 3086 2793 2017 116 4 0 chr12 84492568 84492835 -59293620 + AluSx SINE Alu 1 268 -44 384 77 0 0 chr12 84492845 84492897 -59293558 + (CAA)n Simple_repeat Simple_repeat 3 54 0 2122 110 29 0 chr12 84493958 84494239 -59292216 - AluSx SINE Alu -23 289 1 909 256 40 5 chr12 84494326 84494549 -59291906 + MIR SINE MIR 1 231 -31 181 315 41 0 chr12 84496726 84496799 -59289656 + L2 LINE L2 2422 2497 -817 190 283 192 33 chr12 84497100 84497220 -59289235 + L2 LINE L2 2928 3066 -206 655 292 55 49 chr12 84498042 84498244 -59288211 + MLT1J LTR MaLR 1 207 -304 992 181 37 19 chr12 84498244 84498459 -59287996 + MER20B DNA MER1_type 1 219 0 655 292 55 49 chr12 84498459 84498622 -59287833 + MLT1J LTR MaLR 207 368 -143 767 141 0 30 chr12 84498710 84498845 -59287610 + FLAM_C SINE Alu 2 132 -1 279 316 51 75 chr12 84498986 84499360 -59287095 - MLT1K LTR MaLR -204 384 20 2261 117 0 0 chr12 84501266 84501564 -59284891 + AluSg SINE Alu 1 298 -12 2095 44 0 11 chr12 84501696 84501967 -59284488 + L1PA6 LINE L1 5887 6154 0 23 0 0 0 chr12 84502074 84502097 -59284358 + AT_rich Low_complexity Low_complexity 1 23 0 2095 104 3 21 chr12 84502335 84502673 -59283782 + AluSq SINE Alu 1 333 0 198 103 0 0 chr12 84503172 84503201 -59283254 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 394 214 11 45 chr12 84503242 84503331 -59283124 + L2 LINE L2 3186 3271 -1 196 300 46 77 chr12 84503341 84503363 -59283092 - L2 LINE L2 -13 3259 3238 1949 154 3 6 chr12 84503363 84503674 -59282781 - AluJo SINE Alu -2 310 1 196 300 46 77 chr12 84503674 84503781 -59282674 - L2 LINE L2 -34 3238 3134 254 239 15 0 chr12 84504338 84504405 -59282050 - MER115 DNA AcHobo -25 668 601 1965 64 0 4 chr12 84504410 84504659 -59281796 + AluY SINE Alu 62 309 -2 2023 129 20 7 chr12 84504675 84504970 -59281485 + AluSx SINE Alu 1 299 -13 594 112 10 10 chr12 84504988 84505086 -59281369 + MSTB1 LTR MaLR 1 98 -334 553 259 0 0 chr12 84506026 84506157 -59280298 + MER117 DNA MER1_type 1 131 -66 2700 29 0 0 chr12 84509315 84509623 -59276832 + AluY SINE Alu 1 308 -3 29 28 0 0 chr12 84510051 84510087 -59276368 + AT_rich Low_complexity Low_complexity 1 36 0 218 300 33 56 chr12 84510257 84510347 -59276108 - MIR SINE MIR -86 176 89 749 138 30 6 chr12 84510643 84510810 -59275645 + CT-rich Low_complexity Low_complexity 1 171 0 1035 68 0 53 chr12 84510810 84511000 -59275455 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 264 312 0 11 chr12 84511053 84511146 -59275309 + (CCA)n Simple_repeat Simple_repeat 1 92 0 982 317 97 22 chr12 84511361 84511438 -59275017 + L2 LINE L2 2513 2583 -730 512 257 9 0 chr12 84511438 84511551 -59274904 - MER81 DNA DNA 0 114 1 982 317 97 22 chr12 84511551 84512175 -59274280 + L2 LINE L2 2583 3269 -44 897 268 82 32 chr12 84512248 84512628 -59273827 - LTR16A LTR ERVL 0 450 52 213 146 0 0 chr12 84512808 84512856 -59273599 + (A)n Simple_repeat Simple_repeat 1 48 0 191 287 213 32 chr12 84512974 84513068 -59273387 + L2 LINE L2 3158 3268 -4 1857 153 0 13 chr12 84515110 84515417 -59271038 + AluJb SINE Alu 1 303 -9 392 229 12 0 chr12 84515494 84515577 -59270878 - L2 LINE L2 -12 3260 3177 258 106 64 0 chr12 84515880 84515927 -59270528 + MLT1E3 LTR MaLR 549 598 -26 338 129 0 16 chr12 84516015 84516077 -59270378 + Charlie7 DNA MER1_type 44 104 -2508 317 233 33 33 chr12 84516057 84516207 -59270248 + Charlie7 DNA MER1_type 2427 2576 -36 * 650 294 75 9 chr12 84516280 84516508 -59269947 + MIR SINE MIR 19 261 -1 1225 330 205 20 chr12 84516511 84517339 -59269116 + L2 LINE L2 1702 2776 -538 1753 183 3 0 chr12 84517339 84517639 -59268816 + AluJo SINE Alu 4 304 -8 1225 330 205 20 chr12 84517639 84517887 -59268568 + L2 LINE L2 2776 2977 -337 2211 72 0 0 chr12 84517946 84518209 -59268246 + AluY SINE Alu 48 310 -1 1065 209 65 59 chr12 84518236 84518557 -59267898 + MLT1J1 LTR MaLR 3 325 -121 21 36 0 0 chr12 84518625 84518653 -59267802 + AT_rich Low_complexity Low_complexity 1 28 0 9703 52 3 1 chr12 84519177 84521192 -59265263 + L1PA6 LINE L1 4133 6150 -4 393 153 0 0 chr12 84521192 84521264 -59265191 + GA-rich Low_complexity Low_complexity 1 72 0 1663 149 55 42 chr12 84521294 84521602 -59264853 + AluJo SINE Alu 1 312 0 624 188 15 45 chr12 84522892 84523025 -59263430 + AluJo SINE Alu 1 129 -173 897 179 18 24 chr12 84523055 84523223 -59263232 + AluJo SINE Alu 118 284 -28 238 288 119 34 chr12 84525255 84525432 -59261023 + L2 LINE L2 2892 3083 -189 205 225 0 0 chr12 84525755 84525795 -59260660 + L2 LINE L2 3224 3263 -9 1978 178 19 11 chr12 84526395 84526755 -59259700 + MLT1A1 LTR MaLR 3 365 0 897 256 18 9 chr12 84528970 84529193 -59257262 + MIR SINE MIR 33 257 -5 277 315 176 12 chr12 84529207 84529405 -59257050 - MIR SINE MIR -8 254 16 762 289 32 12 chr12 84530097 84530346 -59256109 + MIR SINE MIR 6 259 -3 248 311 16 0 chr12 84530406 84530467 -59255988 + L2 LINE L2 3186 3247 -25 2526 57 0 0 chr12 84531004 84531302 -59255153 - AluY SINE Alu -13 298 1 224 333 79 42 chr12 84531496 84531685 -59254770 + L2 LINE L2 2340 2535 -779 376 350 133 11 chr12 84532418 84532598 -59253857 + MIR SINE MIR 21 222 -40 552 288 117 5 chr12 84533975 84534180 -59252275 - MIR SINE MIR -16 246 19 2387 88 0 3 chr12 84535617 84535923 -59250532 + AluSg SINE Alu 1 305 -5 398 308 190 8 chr12 84535926 84536189 -59250266 - L1ME4a LINE L1 -77 6044 5734 348 317 77 33 chr12 84538578 84538761 -59247694 + MIR SINE MIR 7 197 -65 1890 98 102 18 chr12 84538943 84539228 -59247227 + AluSc SINE Alu 1 309 0 639 269 132 5 chr12 84540382 84540594 -59245861 + MIR SINE MIR 7 245 -17 931 200 21 11 chr12 84541503 84541739 -59244716 + MER84 LTR ERVI 2 169 -338 2167 142 18 0 chr12 84541882 84542219 -59244236 + MER84 LTR ERVI 165 507 0 228 133 22 0 chr12 84542899 84542944 -59243511 - MIR SINE MIR -66 142 97 1951 163 145 18 chr12 84543349 84543846 -59242609 + L1ME2 LINE L1 5603 6162 -2 1349 197 0 24 chr12 84544389 84544638 -59241817 + AluJo SINE Alu 43 285 -27 38 39 0 0 chr12 84544638 84544690 -59241765 + AT_rich Low_complexity Low_complexity 1 52 0 1152 142 29 49 chr12 84544692 84544938 -59241517 - L1MB7 LINE L1 -10 6174 5934 1789 165 37 21 chr12 84544946 84545322 -59241133 - L1MB7 LINE L1 -337 5847 5466 2831 10 0 0 chr12 84545670 84545976 -59240479 - AluY SINE Alu -5 306 1 395 232 152 24 chr12 84545979 84546143 -59240312 - MIR SINE MIR -8 254 70 180 0 0 0 chr12 84547803 84547823 -59238632 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 7011 21 7 2 chr12 84547833 84548672 -59237783 - L1PA3 LINE L1 -3 6152 5310 * 11197 27 2 1 chr12 84548663 84550004 -59236451 + L1PA3 LINE L1 3974 5316 -830 819 56 35 21 chr12 84551188 84551332 -59235123 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 1850 87 71 15 chr12 84551333 84551599 -59234856 - AluSp SINE Alu -32 281 1 208 140 40 20 chr12 84552195 84552245 -59234210 + C-rich Low_complexity Low_complexity 2 52 0 351 253 0 53 chr12 84552368 84552463 -59233992 + L2 LINE L2 3183 3272 0 322 242 11 22 chr12 84553659 84553750 -59232705 - L2 LINE L2 -15 3298 3209 2156 107 0 3 chr12 84553845 84554134 -59232321 + AluSx SINE Alu 1 288 -24 268 263 50 12 chr12 84554155 84554235 -59232220 + MIR SINE MIR 47 129 -133 194 216 0 0 chr12 84554308 84554345 -59232110 + MIR SINE MIR 226 262 0 24 53 0 0 chr12 84554986 84555024 -59231431 + AT_rich Low_complexity Low_complexity 1 38 0 334 274 113 8 chr12 84555596 84555720 -59230735 - L2 LINE L2 0 3272 3136 202 328 30 0 chr12 84558237 84558304 -59228151 - MIR SINE MIR -12 250 182 315 0 0 0 chr12 84559014 84559049 -59227406 + (TA)n Simple_repeat Simple_repeat 1 35 0 411 283 174 28 chr12 84561704 84561916 -59224539 + MIR SINE MIR 17 259 -3 21 95 0 0 chr12 84565499 84565562 -59220893 + AT_rich Low_complexity Low_complexity 1 63 0 2257 64 0 41 chr12 84566304 84566688 -59219767 - AluY SINE Alu 0 372 1 312 238 32 38 chr12 84568832 84569017 -59217438 - L1M4 LINE L1 -770 5376 5193 28 29 0 0 chr12 84569730 84569765 -59216690 + AT_rich Low_complexity Low_complexity 1 35 0 33 25 0 0 chr12 84571413 84571453 -59215002 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr12 84572883 84572913 -59213542 + AT_rich Low_complexity Low_complexity 1 30 0 901 229 108 9 chr12 84574220 84574443 -59212012 + MIR SINE MIR 18 262 0 653 321 29 5 chr12 84574655 84574864 -59211591 + MIR SINE MIR 47 260 -2 2257 100 0 10 chr12 84574865 84575166 -59211289 - AluSc SINE Alu -11 298 1 2393 206 31 18 chr12 84577441 84577931 -59208524 + MLT1D LTR MaLR 1 496 -9 13927 213 37 38 chr12 84578047 84583026 -59203429 - L1PB3 LINE L1 0 6211 1226 2287 95 7 0 chr12 84583026 84583320 -59203135 - AluSc SINE Alu -9 300 5 13927 213 37 38 chr12 84583320 84583559 -59202896 - L1PB3 LINE L1 -4985 1226 988 189 0 0 0 chr12 84583559 84583580 -59202875 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 13927 213 37 38 chr12 84583580 84584562 -59201893 - L1PB3 LINE L1 -5223 988 23 840 283 62 10 chr12 84584581 84584888 -59201567 - L1PBa LINE L1 -5257 1606 1284 1257 306 69 53 chr12 84584909 84585608 -59200847 - L1PBa LINE L1 -5673 1190 504 2316 92 0 0 chr12 84585608 84585912 -59200543 - AluSc SINE Alu -1 308 5 1257 306 69 53 chr12 84585912 84586310 -59200145 - L1PBa LINE L1 -6359 504 70 1509 187 43 13 chr12 84586310 84586609 -59199846 + AluJo SINE Alu 1 308 -4 1257 306 69 53 chr12 84586609 84586679 -59199776 - L1PBa LINE L1 -6793 70 3 313 256 111 0 chr12 84588076 84588166 -59198289 - L2 LINE L2 -15 3298 3199 27 0 0 0 chr12 84588435 84588462 -59197993 + AT_rich Low_complexity Low_complexity 1 27 0 402 304 48 0 chr12 84590471 84590596 -59195859 + MIR SINE MIR 106 236 -26 215 224 20 0 chr12 84590753 84590802 -59195653 + CT-rich Low_complexity Low_complexity 3 52 0 306 73 0 0 chr12 84591179 84591220 -59195235 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 21 0 0 0 chr12 84591749 84591770 -59194685 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 84594511 84594543 -59191912 + AT_rich Low_complexity Low_complexity 1 32 0 369 276 49 102 chr12 84594631 84594856 -59191599 + MIR SINE MIR 49 261 -1 1419 96 5 0 chr12 84595604 84595792 -59190663 + AluY SINE Alu 108 296 -15 263 312 174 7 chr12 84598156 84598294 -59188161 + MIR SINE MIR 95 255 -7 21 89 0 0 chr12 84598304 84598360 -59188095 + AT_rich Low_complexity Low_complexity 1 56 0 1736 177 3 3 chr12 84600225 84600524 -59185931 - AluJo SINE Alu -13 299 1 21 71 0 0 chr12 84601127 84601169 -59185286 + AT_rich Low_complexity Low_complexity 1 42 0 2369 53 0 0 chr12 84602195 84602513 -59183942 + AluYb8 SINE Alu 7 324 0 446 318 27 85 chr12 84604303 84604444 -59182011 + MLT1L LTR MaLR 30 178 -437 13976 136 42 9 chr12 84604444 84606450 -59180005 - Tigger1 DNA MER2_type 0 2418 323 378 0 0 0 chr12 84606450 84606492 -59179963 + (GA)n Simple_repeat Simple_repeat 1 42 0 13976 136 42 9 chr12 84606492 84606825 -59179630 - Tigger1 DNA MER2_type -2095 323 2 446 318 27 85 chr12 84606825 84607048 -59179407 + MLT1L LTR MaLR 178 373 -242 979 309 27 27 chr12 84607172 84607580 -59178875 - MLT1I LTR MaLR 0 409 2 225 94 0 0 chr12 84607624 84607656 -59178799 + (ATG)n Simple_repeat Simple_repeat 2 33 0 510 304 91 30 chr12 84607664 84607894 -59178561 - MIR SINE MIR -15 247 4 319 56 37 0 chr12 84607951 84608005 -59178450 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 457 365 32 16 chr12 84608631 84608880 -59177575 + MLT1K LTR MaLR 13 265 -323 325 257 50 20 chr12 84608894 84608995 -59177460 + L2 LINE L2 3190 3293 -20 365 301 62 36 chr12 84608997 84609190 -59177265 + MLT1K LTR MaLR 283 480 -108 315 272 12 0 chr12 84609882 84609963 -59176492 + MIR SINE MIR 132 213 -49 2898 13 0 0 chr12 84610572 84610890 -59175565 + AluYb8 SINE Alu 1 318 0 21 36 0 0 chr12 84611654 84611682 -59174773 + AT_rich Low_complexity Low_complexity 1 28 0 211 256 0 0 chr12 84612293 84612336 -59174119 + L2 LINE L2 3215 3257 -15 1504 214 16 38 chr12 84613191 84613561 -59172894 + MLT1A1 LTR MaLR 4 365 0 2165 66 6 35 chr12 84614474 84614791 -59171664 - AluY SINE Alu -2 309 2 2332 95 7 0 chr12 84615246 84615552 -59170903 - AluSx SINE Alu -4 308 1 644 141 8 0 chr12 84616060 84616181 -59170274 + CT-rich Low_complexity Low_complexity 3 124 0 2632 102 6 3 chr12 84616740 84617103 -59169352 + THE1B LTR MaLR 1 364 0 234 265 96 12 chr12 84617278 84617361 -59169094 + MIR SINE MIR 45 134 -128 1647 204 68 42 chr12 84617796 84618251 -59168204 - MLT1C LTR MaLR 0 467 1 2116 95 44 10 chr12 84618417 84618713 -59167742 + AluSx SINE Alu 1 306 -6 1825 181 0 3 chr12 84618782 84619085 -59167370 - AluJo SINE Alu -10 302 1 1858 228 140 23 chr12 84619795 84620352 -59166103 + MLT1E1 LTR MaLR 3 624 -30 2296 133 90 0 chr12 84620360 84620760 -59165695 - L1MC3 LINE L1 -8 7777 7342 252 105 0 0 chr12 84620761 84620799 -59165656 + MLT1E1 LTR MaLR 583 620 -4 302 301 61 25 chr12 84621455 84621618 -59164837 + L2 LINE L2 1806 1974 -1340 186 323 65 0 chr12 84622244 84622306 -59164149 + L2 LINE L2 3182 3247 -66 271 386 99 26 chr12 84623426 84624137 -59162318 - L2 LINE L2 -214 3058 2289 321 232 112 8 chr12 84624147 84624272 -59162183 - L1ME LINE L1 -726 5440 5303 207 157 39 0 chr12 84624318 84624369 -59162086 + (TA)n Simple_repeat Simple_repeat 2 54 0 850 229 19 23 chr12 84624371 84624629 -59161826 - L1ME LINE L1 -904 5242 4986 * 2336 216 68 69 chr12 84624617 84624967 -59161488 + L1ME1 LINE L1 5396 5745 -589 2373 104 0 0 chr12 84624967 84625275 -59161180 + AluSc SINE Alu 1 308 -1 2336 216 68 69 chr12 84625275 84625706 -59160749 + L1ME1 LINE L1 5745 6334 0 205 195 0 0 chr12 84625861 84625902 -59160553 + GA-rich Low_complexity Low_complexity 4 44 0 256 365 101 32 chr12 84627203 84627620 -59158835 - L2 LINE L2 -30 3242 2801 204 229 83 42 chr12 84627679 84627775 -59158680 + L2 LINE L2 3197 3296 -17 595 270 132 11 chr12 84627807 84627996 -59158459 - MIR SINE MIR -28 234 23 42 48 0 0 chr12 84628243 84628306 -59158149 + AT_rich Low_complexity Low_complexity 1 63 0 625 231 65 9 chr12 84629425 84629654 -59156801 - MER20B DNA MER1_type -28 755 514 1007 274 56 7 chr12 84629775 84630078 -59156377 - MER20B DNA MER1_type -465 318 1 2357 105 0 3 chr12 84630081 84630394 -59156061 + AluSx SINE Alu 1 312 0 355 369 29 35 chr12 84630866 84631213 -59155242 - L2 LINE L2 -39 3233 2889 999 265 27 8 chr12 84632139 84632396 -59154059 - MIR SINE MIR 0 262 1 22 0 0 73 chr12 84632730 84632771 -59153684 + AT_rich Low_complexity Low_complexity 1 38 0 667 260 127 57 chr12 84633894 84634225 -59152230 - L2 LINE L2 0 3313 2960 192 309 0 18 chr12 84634495 84634550 -59151905 - MIR SINE MIR -131 77 24 807 272 143 59 chr12 84634768 84634895 -59151560 + L2 LINE L2 2598 2713 -600 2368 105 0 3 chr12 84634895 84635253 -59151202 + AluSp SINE Alu 1 313 0 807 272 143 59 chr12 84635253 84635753 -59150702 + L2 LINE L2 2713 3288 -25 6046 228 57 36 chr12 84635818 84637293 -59149162 + L1MA8 LINE L1 7 1449 -5657 2174 115 13 3 chr12 84637293 84637598 -59148857 + AluSq SINE Alu 1 308 -5 6046 228 57 36 chr12 84637598 84640077 -59146378 + L1MA8 LINE L1 1449 4647 -2459 4769 131 39 22 chr12 84640072 84641563 -59144892 + L1MA8 LINE L1 5559 7072 -179 * 804 155 88 17 chr12 84641531 84641712 -59144743 - L1MA8 LINE L1 -32 6259 6066 * 25 0 0 0 chr12 84641732 84641757 -59144698 + AT_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr12 84643215 84643263 -59143192 + AT_rich Low_complexity Low_complexity 1 48 0 2459 84 3 0 chr12 84643747 84644056 -59142399 + AluSq SINE Alu 3 312 -1 833 217 12 12 chr12 84644261 84644427 -59142028 - FRAM SINE Alu 0 166 1 360 284 69 0 chr12 84644515 84644631 -59141824 + MIR SINE MIR 108 231 -31 399 41 0 0 chr12 84644995 84645044 -59141411 + (CA)n Simple_repeat Simple_repeat 2 50 0 2151 119 10 7 chr12 84646033 84646335 -59140120 - AluSx SINE Alu -9 303 1 398 233 158 59 chr12 84646405 84646607 -59139848 - MIR SINE MIR 0 262 41 500 225 66 86 chr12 84646679 84646923 -59139532 + MER112 DNA MER1_type 17 255 -5 216 97 0 0 chr12 84647602 84647633 -59138822 + (T)n Simple_repeat Simple_repeat 1 31 0 2589 100 27 16 chr12 84649428 84649799 -59136656 + THE1C LTR MaLR 1 375 0 323 335 124 57 chr12 84650074 84650510 -59135945 - L2 LINE L2 0 3272 2808 347 264 107 21 chr12 84650702 84650842 -59135613 + MIR SINE MIR 75 226 -36 1282 351 67 21 chr12 84650873 84651424 -59135031 + MER115 DNA AcHobo 1 580 -113 2526 158 45 26 chr12 84651424 84651848 -59134607 - MSTB1 LTR MaLR 0 432 1 1282 351 67 21 chr12 84651848 84651863 -59134592 + MER115 DNA AcHobo 580 593 -100 2036 125 20 7 chr12 84651866 84652162 -59134293 - AluSx SINE Alu -12 300 1 2576 52 0 3 chr12 84652178 84652488 -59133967 - AluY SINE Alu -2 309 1 384 232 152 24 chr12 84652491 84652655 -59133800 - MIR SINE MIR -8 254 70 180 0 0 0 chr12 84654319 84654339 -59132116 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 422 45 0 61 chr12 84654342 84654408 -59132047 - L1PA2 LINE L1 0 6155 6094 1209 217 204 46 chr12 84654630 84656382 -59130073 + SATR1 Satellite Satellite 1 2028 -2 1412 198 218 47 chr12 84656416 84658295 -59128160 + SATR1 Satellite Satellite 1 1557 -2278 2134 101 40 0 chr12 84658295 84658591 -59127864 - AluY SINE Alu -3 308 1 1412 198 218 47 chr12 84658591 84659691 -59126764 + SATR1 Satellite Satellite 1557 3835 0 1053 192 174 81 chr12 84659720 84660127 -59126328 + SATR1 Satellite Satellite 25 469 -1 586 205 48 48 chr12 84660184 84660350 -59126105 - MER58C DNA MER1_type -5 210 45 3766 49 0 7 chr12 84661224 84661675 -59124780 + LTR7 LTR ERV1 1 448 -2 3262 99 65 47 chr12 84662362 84662889 -59123566 - MER41A LTR ERV1 0 554 19 239 254 16 32 chr12 84663925 84663988 -59122467 + polypyrimidine Low_complexity Low_complexity 1 62 0 1621 185 16 32 chr12 84664679 84665058 -59121397 + AluJo SINE Alu 4 377 0 2227 92 3 19 chr12 84665080 84665395 -59121060 + AluSx SINE Alu 1 310 -2 275 299 175 10 chr12 84667012 84667109 -59119346 - L2 LINE L2 -2 3270 3158 3371 181 42 45 chr12 84667110 84667874 -59118581 + L1MB7 LINE L1 5406 6167 -17 460 365 72 26 chr12 84667954 84668378 -59118077 - L2 LINE L2 -215 3057 2606 584 254 82 22 chr12 84668649 84668881 -59117574 + MIR SINE MIR 6 251 -11 6820 143 109 103 chr12 84668930 84670611 -59115844 - pTR5 LTR ERV1 -6 2432 743 2188 135 0 0 chr12 84670792 84671104 -59115351 + AluSq SINE Alu 1 312 -1 2269 99 10 0 chr12 84672279 84672581 -59113874 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr12 84672752 84672780 -59113675 + AT_rich Low_complexity Low_complexity 1 28 0 209 108 27 0 chr12 84674357 84674394 -59112061 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 226 330 102 17 chr12 84675341 84675459 -59110996 - MIR SINE MIR -95 167 40 1200 172 0 14 chr12 84675576 84675791 -59110664 + AluJb SINE Alu 87 298 -14 208 347 32 16 chr12 84675980 84676103 -59110352 + MIR SINE MIR 28 152 -81 1586 143 9 67 chr12 84676728 84677043 -59109412 - AluJo SINE Alu -15 297 1 189 0 0 0 chr12 84677262 84677283 -59109172 + (A)n Simple_repeat Simple_repeat 1 21 0 8562 137 86 47 chr12 84677417 84679049 -59107406 + pTR5 LTR ERV1 743 2438 0 260 290 43 45 chr12 84679505 84679661 -59106794 - MIR SINE MIR -62 146 12 1780 152 0 27 chr12 84679937 84680234 -59106221 + AluJb SINE Alu 1 289 -23 1648 187 0 17 chr12 84680450 84680749 -59105706 - AluJb SINE Alu -18 294 1 4249 109 143 100 chr12 84680833 84682191 -59104264 + pTR5 LTR ERV1 740 2438 0 617 269 91 11 chr12 84683246 84683432 -59103023 - MIR SINE MIR -40 222 22 2337 87 0 10 chr12 84684359 84684669 -59101786 + AluSx SINE Alu 1 307 -5 1076 264 227 15 chr12 84685060 84685133 -59101322 + L1M2 LINE L1 1 57 -6792 2033 120 11 3 chr12 84685133 84685436 -59101019 + AluSg SINE Alu 2 306 0 1076 264 227 15 chr12 84685436 84685766 -59100689 + L1M2 LINE L1 57 491 -6358 2872 255 55 24 chr12 84685868 84686630 -59099825 + L1M2 LINE L1 659 1611 -5238 2124 130 3 7 chr12 84686630 84686931 -59099524 + AluSx SINE Alu 1 300 -12 2872 255 55 24 chr12 84686931 84687005 -59099450 + L1M2 LINE L1 1611 1681 -5168 2147 123 7 0 chr12 84687747 84688040 -59098415 + AluSq SINE Alu 1 295 -18 1704 243 61 36 chr12 84688356 84688550 -59097905 - MLT1J LTR MaLR -4 507 319 638 239 86 20 chr12 84688550 84688747 -59097708 + MER63A DNA MER1_type 1 210 0 1704 243 61 36 chr12 84688747 84689046 -59097409 - MLT1J LTR MaLR -192 319 2 2242 105 7 0 chr12 84689333 84689627 -59096828 - AluSc SINE Alu -13 296 1 235 254 18 0 chr12 84690529 84690584 -59095871 + MLT1K LTR MaLR 485 540 -48 612 194 32 176 chr12 84690631 84690762 -59095693 - MER5A DNA MER1_type -1 188 98 766 192 0 8 chr12 84690762 84690887 -59095568 + FLAM_C SINE Alu 1 124 -9 612 194 32 176 chr12 84690887 84690971 -59095484 - MER5A DNA MER1_type -91 98 4 233 309 12 48 chr12 84691029 84691113 -59095342 + L3 LINE CR1 1495 1575 -2 2532 57 0 0 chr12 84691703 84692003 -59094452 + AluY SINE Alu 1 300 -11 204 370 37 9 chr12 84692344 84692452 -59094003 + L2 LINE L2 2936 3046 -226 378 286 25 8 chr12 84694254 84694373 -59092082 - L2 LINE L2 -14 3299 3179 2402 81 0 3 chr12 84694458 84694756 -59091699 + AluSg1 SINE Alu 1 297 -12 757 341 99 11 chr12 84694843 84695309 -59091146 - L2 LINE L2 -397 2917 2411 1697 99 0 0 chr12 84695581 84695803 -59090652 - AluSg/x SINE Alu 0 310 89 1215 174 66 0 chr12 84695803 84696015 -59090440 - MER7A DNA MER2_type -122 224 1 1756 117 110 0 chr12 84697505 84697769 -59088686 + AluSg SINE Alu 1 293 -17 242 248 203 30 chr12 84698110 84698243 -59088212 + MIR SINE MIR 58 213 -49 455 278 56 79 chr12 84698516 84698930 -59087525 - L1MC4a LINE L1 -93 6028 5599 1813 174 10 3 chr12 84699463 84699768 -59086687 + 7SLRNA srpRNA srpRNA 1 307 -13 408 180 10 50 chr12 84700143 84700243 -59086212 - HAL1 LINE L1 -4 2503 2408 268 311 47 0 chr12 84700490 84700596 -59085859 - MLT1L LTR MaLR -23 592 482 296 286 118 0 chr12 84700642 84700761 -59085694 - MLT1L LTR MaLR -350 265 133 186 254 17 51 chr12 84701232 84701291 -59085164 + L2 LINE L2 3216 3272 0 312 137 0 0 chr12 84703218 84703269 -59083186 + (TCCCC)n Simple_repeat Simple_repeat 4 54 0 388 159 14 0 chr12 84703273 84703342 -59083113 - AluS SINE Alu -1 301 232 1542 109 147 4 chr12 84703390 84703628 -59082827 + AluSg SINE Alu 1 272 -38 14532 73 8 4 chr12 84703760 84705583 -59080872 - HERVL-A1 LTR ERVL -3497 2157 328 2852 72 24 8 chr12 84705583 84705956 -59080499 - MLT2A1 LTR ERVL -65 379 1 180 0 0 0 chr12 84705987 84706007 -59080448 + (T)n Simple_repeat Simple_repeat 1 20 0 2237 86 0 51 chr12 84706188 84706502 -59079953 - AluY SINE Alu -13 298 1 3804 255 72 52 chr12 84706707 84707697 -59078758 - L1P LINE L1 -1535 4611 3642 696 215 8 0 chr12 84707697 84707818 -59078637 + FLAM_A SINE Alu 1 122 -11 3804 255 72 52 chr12 84707818 84708065 -59078390 - L1P LINE L1 -2504 3642 3401 528 117 0 0 chr12 84708065 84708142 -59078313 - L1MA2 LINE L1 0 6304 6228 3804 255 72 52 chr12 84708142 84708468 -59077987 - L1P LINE L1 -2745 3401 3016 1366 208 45 0 chr12 84708468 84708732 -59077723 - MSTB1 LTR MaLR 0 432 157 7550 250 26 34 chr12 84708815 84709877 -59076578 + L1PA12 LINE L1 5 1074 -6507 2173 102 14 10 chr12 84709877 84710172 -59076283 - AluSg SINE Alu -14 296 1 7550 250 26 34 chr12 84710172 84711231 -59075224 + L1PA12 LINE L1 1074 1537 -6044 180 0 0 0 chr12 84711231 84711251 -59075204 + (CACAG)n Simple_repeat Simple_repeat 2 21 0 7550 250 26 34 chr12 84711251 84712363 -59074092 + L1PA12 LINE L1 1537 2656 -4925 * 12925 76 6 2 chr12 84712362 84714090 -59072365 - L1P LINE L1 -1311 4835 3100 2153 90 75 0 chr12 84714084 84714406 -59072049 + L1P LINE L1 2754 3099 -3047 * 348 305 210 7 chr12 84714642 84714839 -59071616 + MLT1J LTR MaLR 246 563 -52 2116 133 7 0 chr12 84715742 84716044 -59070411 + AluSx SINE Alu 1 304 -8 182 311 33 0 chr12 84716318 84716379 -59070076 - L2 LINE L2 -9 3263 3201 891 105 8 0 chr12 84716551 84716684 -59069771 - HERVH LTR ERV1 -3092 4621 4488 3374 119 0 4 chr12 84716686 84717182 -59069273 - HERVH LTR ERV1 -3720 3993 3500 833 176 20 0 chr12 84717181 84717329 -59069126 - HERVH LTR ERV1 -4423 3290 3140 * 20735 90 18 11 chr12 84717323 84720289 -59066166 - HERVH LTR ERV1 -4726 2987 1 3713 58 0 7 chr12 84720291 84720742 -59065713 - LTR7 LTR ERV1 -2 448 1 190 234 13 91 chr12 84721107 84721184 -59065271 - L3 LINE CR1 -1390 187 117 1850 142 29 26 chr12 84721393 84721702 -59064753 - AluSx SINE Alu -1 311 2 1621 86 0 31 chr12 84722099 84722236 -59064219 + HERVL LTR ERVL 2126 2255 -3399 2074 133 0 23 chr12 84722236 84722544 -59063911 + AluSx SINE Alu 1 301 -11 1621 86 0 31 chr12 84722544 84722628 -59063827 + HERVL LTR ERVL 2255 2340 -3314 2476 90 35 0 chr12 84722630 84722973 -59063482 + L1PA7 LINE L1 2 356 -6105 641 110 0 30 chr12 84722979 84723079 -59063376 - Alu SINE Alu 0 310 214 7511 75 8 6 chr12 84723079 84726394 -59060061 + L1PA7 LINE L1 2932 6469 0 21514 73 18 3 chr12 84726397 84729115 -59057340 + HERVL LTR ERVL 2324 5084 -570 515 176 0 0 chr12 84729115 84729200 -59057255 + FLAM SINE Alu 49 133 -10 2452 55 3 43 chr12 84729262 84729416 -59057039 + HERVL LTR ERVL 5081 5217 -437 216 0 0 0 chr12 84729416 84729440 -59057015 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2452 55 3 43 chr12 84729440 84729612 -59056843 + HERVL LTR ERVL 5217 5394 -260 399 220 60 83 chr12 84730163 84730331 -59056124 - MLT1J1 LTR MaLR -20 426 263 235 260 0 0 chr12 84730372 84730422 -59056033 + MER115 DNA AcHobo 1 50 -643 446 251 58 52 chr12 84730711 84731047 -59055408 - L1MEc LINE L1 -4757 1476 1141 2304 79 14 0 chr12 84731049 84731341 -59055114 - AluSc SINE Alu -13 296 1 2350 111 0 0 chr12 84731359 84731666 -59054789 - AluSx SINE Alu -5 307 1 495 289 121 20 chr12 84731671 84731920 -59054535 - L1MEc LINE L1 -5761 635 362 2067 236 55 13 chr12 84731958 84731998 -59054457 - L1M4 LINE L1 -4620 1955 1918 2231 82 3 10 chr12 84731998 84732292 -59054163 - AluY SINE Alu -15 296 5 2067 236 55 13 chr12 84732292 84732857 -59053598 - L1M4 LINE L1 -4657 1918 1165 542 354 74 31 chr12 84733173 84733659 -59052796 - L1M4 LINE L1 -5764 811 305 195 129 0 0 chr12 84733667 84733698 -59052757 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 1140 262 39 12 chr12 84733704 84734036 -59052419 - L1MEc LINE L1 -6013 383 43 230 163 41 0 chr12 84734037 84734086 -59052369 - L1M1 LINE L1 -860 5442 5392 * 248 244 58 12 chr12 84734073 84734159 -59052296 - L1ME LINE L1 -489 5632 5543 2153 109 31 0 chr12 84734172 84734465 -59051990 + AluSp SINE Alu 1 302 -11 304 176 15 29 chr12 84734530 84734598 -59051857 + L1M LINE L1 5331 5397 -2411 * 1974 204 64 126 chr12 84734597 84734691 -59051764 + HAL1 LINE L1 873 971 -1536 2263 105 0 3 chr12 84734691 84734985 -59051470 - AluSx SINE Alu -19 293 1 1974 204 64 126 chr12 84734985 84735907 -59050548 + HAL1 LINE L1 971 1826 -681 224 30 30 0 chr12 84736784 84736817 -59049638 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2170 92 0 11 chr12 84736817 84737099 -59049356 - AluSx SINE Alu -33 279 1 201 217 22 0 chr12 84737128 84737174 -59049281 + (TA)n Simple_repeat Simple_repeat 1 47 0 227 347 47 47 chr12 84737403 84737616 -59048839 - MIR SINE MIR -46 216 4 552 274 42 12 chr12 84737643 84737811 -59048644 + MIR SINE MIR 88 260 -2 308 208 42 75 chr12 84738267 84738387 -59048068 + L1MC5 LINE L1 7606 7721 -240 30 59 0 0 chr12 84738530 84738581 -59047874 + AT_rich Low_complexity Low_complexity 1 51 0 2171 99 28 0 chr12 84738584 84738868 -59047587 + AluSx SINE Alu 1 292 -20 1309 198 172 45 chr12 84739648 84740113 -59046342 + SATR1 Satellite Satellite 1 523 -2 1314 198 271 12 chr12 84740155 84741738 -59044717 + SATR1 Satellite Satellite 1 1993 -1 1065 206 161 86 chr12 84741762 84742146 -59044309 + SATR1 Satellite Satellite 5 417 -53 2840 171 0 0 chr12 84742270 84742721 -59043734 + HERVH LTR ERV1 4699 5149 -2564 1342 114 22 57 chr12 84742722 84742950 -59043505 + HERVH LTR ERV1 5600 5819 -1894 1612 162 56 0 chr12 84742952 84743254 -59043201 + HERVH LTR ERV1 7326 7644 -69 3099 183 49 31 chr12 84743393 84743846 -59042609 + L1MA4A LINE L1 2204 2647 -4201 2114 118 0 3 chr12 84743846 84744143 -59042312 + AluSg SINE Alu 1 296 -14 270 0 0 0 chr12 84744152 84744182 -59042273 + (CA)n Simple_repeat Simple_repeat 2 31 0 3099 183 49 31 chr12 84744182 84744450 -59042005 + L1MA4A LINE L1 2654 2945 -3903 3887 106 171 108 chr12 84744457 84745778 -59040677 + pTR5 LTR ERV1 744 2438 0 8030 204 59 44 chr12 84745788 84746265 -59040190 + L1MA4A LINE L1 2955 3423 -3582 288 0 0 0 chr12 84746265 84746297 -59040158 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1934 129 3 44 chr12 84746299 84746447 -59040008 - AluSq SINE Alu -30 283 131 384 40 0 0 chr12 84746447 84746497 -59039958 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2482 67 3 0 chr12 84746506 84746805 -59039650 - AluY SINE Alu -11 300 1 1934 129 3 44 chr12 84746805 84746941 -59039514 - AluSq SINE Alu -190 123 1 8030 204 59 44 chr12 84746941 84748558 -59037897 + L1MA4A LINE L1 3423 5014 -1991 374 105 0 35 chr12 84748558 84748615 -59037840 + Alu SINE Alu 1 55 -248 1113 95 0 0 chr12 84748617 84748764 -59037691 + AluSp/q SINE Alu 159 305 -8 8030 204 59 44 chr12 84748764 84748780 -59037675 + L1MA4A LINE L1 5014 5028 -1977 854 153 0 8 chr12 84748780 84748911 -59037544 + FRAM SINE Alu 23 152 -24 8030 204 59 44 chr12 84748911 84749517 -59036938 + L1MA4A LINE L1 5028 5623 -1382 1474 148 142 35 chr12 84749517 84749856 -59036599 - THE1C LTR MaLR 0 375 1 8030 204 59 44 chr12 84749856 84750992 -59035463 + L1MA4A LINE L1 5623 6982 -23 355 221 139 0 chr12 84751288 84751374 -59035081 + L2 LINE L2 3212 3309 -4 1078 210 163 0 chr12 84751955 84752250 -59034205 + MER2 DNA MER2_type 1 343 -1 2014 115 7 0 chr12 84752368 84752647 -59033808 + AluSx SINE Alu 23 303 -9 2022 113 18 0 chr12 84752708 84752990 -59033465 + AluSx SINE Alu 1 287 -25 870 212 127 131 chr12 84753092 84753895 -59032560 + L1MC5 LINE L1 6765 7564 -397 889 233 45 38 chr12 84753961 84754248 -59032207 + LTR16B LTR ERVL 1 289 -175 * 1925 168 88 10 chr12 84754229 84754616 -59031839 + MSTB1 LTR MaLR 16 432 0 289 275 76 15 chr12 84754630 84754761 -59031694 + LTR16B LTR ERVL 276 414 -50 314 279 84 22 chr12 84754792 84754971 -59031484 + L1MC5 LINE L1 7636 7825 -136 1751 166 29 14 chr12 84755032 84755382 -59031073 + L1MC3 LINE L1 7418 7772 -13 21 0 0 0 chr12 84755395 84755416 -59031039 + AT_rich Low_complexity Low_complexity 1 21 0 195 69 0 0 chr12 84755870 84755899 -59030556 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 806 232 44 0 chr12 84755974 84756155 -59030300 - MER5A DNA MER1_type 0 189 1 1130 167 14 3 chr12 84756436 84756671 -59029784 - AluJb SINE Alu -19 293 1 2351 89 3 7 chr12 84760914 84761218 -59025237 - AluSp SINE Alu -10 303 1 225 321 151 8 chr12 84761760 84761899 -59024556 + MER5B DNA MER1_type 27 178 0 254 277 78 43 chr12 84763549 84763690 -59022765 - Charlie8 DNA MER1_type -2168 249 104 530 81 14 0 chr12 84764284 84764358 -59022097 + AluSg/x SINE Alu 190 264 -45 1417 169 3 0 chr12 84764508 84764792 -59021663 + L1M2 LINE L1 1833 2117 -4732 1936 132 59 0 chr12 84764796 84765085 -59021370 + AluSp SINE Alu 1 306 -7 2200 95 0 13 chr12 84765089 84765405 -59021050 + AluSx SINE Alu 1 312 0 861 273 30 4 chr12 84765490 84765721 -59020734 - MIR SINE MIR -1 261 25 2249 71 0 0 chr12 84765732 84766055 -59020400 - AluY SINE Alu 0 323 1 288 77 0 0 chr12 84766752 84766791 -59019664 + (TG)n Simple_repeat Simple_repeat 1 39 0 2006 114 11 0 chr12 84766796 84767068 -59019387 - AluSq SINE Alu -38 275 1 2150 125 0 22 chr12 84767616 84767936 -59018519 + AluSq SINE Alu 1 313 0 1246 109 11 6 chr12 84768614 84768788 -59017667 - AluSp SINE Alu -132 181 7 289 299 159 13 chr12 84768816 84768973 -59017482 - L2 LINE L2 -14 3258 3079 1992 169 0 0 chr12 84769109 84769405 -59017050 + AluJb SINE Alu 1 296 -16 2442 80 0 0 chr12 84769502 84769802 -59016653 + AluSq SINE Alu 1 300 -13 324 210 30 10 chr12 84770892 84770974 -59015481 + FRAM/FAM SINE Alu 21 87 -88 2487 74 0 0 chr12 84771010 84771307 -59015148 - AluY SINE Alu -14 297 1 2353 81 3 0 chr12 84771450 84771746 -59014709 - AluSp SINE Alu -13 300 4 1628 135 106 31 chr12 84772530 84772879 -59013576 - THE1C LTR MaLR 0 375 1 305 323 146 0 chr12 84773093 84773223 -59013232 + MER5A DNA MER1_type 41 189 0 281 283 214 35 chr12 84773395 84773540 -59012915 + MER5B DNA MER1_type 5 175 -3 199 279 29 29 chr12 84773575 84773643 -59012812 - MER5A DNA MER1_type -77 112 45 226 339 222 17 chr12 84773776 84773956 -59012499 - L2 LINE L2 -36 3236 3020 414 335 128 44 chr12 84774183 84774642 -59011813 - L2 LINE L2 -580 2734 2237 1012 252 176 24 chr12 84774657 84775073 -59011382 + L1MEc LINE L1 36 514 -5882 905 203 101 67 chr12 84775082 84775398 -59011057 + L1ME1 LINE L1 5840 6166 0 284 41 82 0 chr12 84775482 84775531 -59010924 + AluY SINE Alu 1 53 -255 4861 239 107 43 chr12 84775658 84775750 -59010705 - L1MEc LINE L1 -1367 4848 4763 2171 111 7 3 chr12 84775750 84776047 -59010408 - AluSx SINE Alu -11 301 4 4861 239 107 43 chr12 84776047 84777299 -59009156 - L1MEc LINE L1 -1452 4763 3592 1880 143 21 11 chr12 84777299 84777586 -59008869 + AluSx SINE Alu 1 290 -22 4861 239 107 43 chr12 84777586 84778207 -59008248 - L1MEc LINE L1 -2623 3592 3012 207 0 0 0 chr12 84778207 84778230 -59008225 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4861 239 107 43 chr12 84778230 84779424 -59007031 - L1MEc LINE L1 -3203 3012 1533 1772 156 7 40 chr12 84779397 84779852 -59006603 - L1P LINE L1 -2964 3251 2812 * 234 81 0 0 chr12 84780578 84780615 -59005840 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 2251 84 0 0 chr12 84780883 84781182 -59005273 - L1PA5 LINE L1 -1 6153 5855 505 251 81 47 chr12 84781277 84781488 -59004967 + LTR40a LTR ERVL 302 519 0 21 36 0 0 chr12 84781878 84781906 -59004549 + AT_rich Low_complexity Low_complexity 1 28 0 1876 113 4 0 chr12 84781909 84782165 -59004290 + AluSx SINE Alu 1 257 -55 217 306 8 60 chr12 84782883 84783017 -59003438 + L2 LINE L2 1968 2094 -1220 1163 36 0 0 chr12 84783065 84783202 -59003253 - AluY SINE Alu -17 294 158 2685 12 12 3 chr12 84783316 84783647 -59002808 - L1P LINE L1 -3432 2714 2381 4613 22 1 1 chr12 84783648 84784404 -59002051 + L1P2 LINE L1 5045 5800 -355 25 0 0 0 chr12 84784530 84784555 -59001900 + AT_rich Low_complexity Low_complexity 1 25 0 2313 103 0 16 chr12 84784960 84785271 -59001184 + AluSg SINE Alu 5 310 0 279 0 0 0 chr12 84785276 84785307 -59001148 + (TA)n Simple_repeat Simple_repeat 1 31 0 270 0 0 0 chr12 84785351 84785381 -59001074 + (CA)n Simple_repeat Simple_repeat 2 31 0 1247 93 12 6 chr12 84786634 84786806 -58999649 + AluSg/x SINE Alu 128 300 -12 304 146 55 0 chr12 84786911 84786966 -58999489 - MER5A DNA MER1_type 0 189 132 2307 90 0 3 chr12 84788078 84788378 -58998077 - AluSx SINE Alu -13 299 1 288 77 0 0 chr12 84789077 84789116 -58997339 + (TG)n Simple_repeat Simple_repeat 1 39 0 2006 114 11 0 chr12 84789121 84789393 -58997062 - AluSq SINE Alu -38 275 1 2150 125 0 22 chr12 84789941 84790261 -58996194 + AluSq SINE Alu 1 313 0 358 346 54 27 chr12 84791216 84791401 -58995054 - L2 LINE L2 0 3313 3124 1942 134 3 23 chr12 84791433 84791739 -58994716 - AluJb SINE Alu -12 300 1 620 206 112 0 chr12 84791746 84791916 -58994539 - MER5C DNA MER1_type -8 316 128 1853 238 117 4 chr12 84792172 84792635 -58993820 - MLT1F LTR MaLR -27 515 1 1867 70 0 0 chr12 84793181 84793410 -58993045 - AluSg SINE Alu -81 229 1 29 47 0 0 chr12 84794749 84794792 -58991663 + AT_rich Low_complexity Low_complexity 1 43 0 1355 159 40 62 chr12 84794866 84795142 -58991313 - AluJo SINE Alu -30 282 13 406 162 232 0 chr12 84795322 84795421 -58991034 - MER5C DNA MER1_type -201 123 2 219 356 89 22 chr12 84795447 84795582 -58990873 - L2 LINE L2 -317 2955 2812 1556 155 50 10 chr12 84795583 84795880 -58990575 - AluJo SINE Alu -3 309 1 641 162 184 6 chr12 84796060 84796239 -58990216 - Charlie7 DNA MER1_type -211 2401 2191 525 186 162 67 chr12 84796505 84796715 -58989740 - Charlie7 DNA MER1_type -2382 230 1 508 321 196 21 chr12 84796781 84797108 -58989347 - L2 LINE L2 -640 2674 2291 528 150 30 50 chr12 84797111 84797211 -58989244 - AluJb SINE Alu -144 168 71 210 297 47 99 chr12 84797222 84797335 -58989120 - L2 LINE L2 -1080 2234 2138 1648 157 26 45 chr12 84797335 84797647 -58988808 + AluJo SINE Alu 1 306 -6 210 297 47 99 chr12 84797647 84797765 -58988690 - L2 LINE L2 -1176 2138 2015 2389 75 10 3 chr12 84798043 84798351 -58988104 - AluSq SINE Alu -3 310 1 267 202 245 11 chr12 84799187 84799281 -58987174 - L1ME4a LINE L1 -15 6106 5991 339 265 102 54 chr12 84799445 84799611 -58986844 - L1ME4a LINE L1 -213 5908 5735 1118 192 139 99 chr12 84799963 84800167 -58986288 + L1MB7 LINE L1 5674 5868 -316 1910 153 0 0 chr12 84800167 84800474 -58985981 + AluSx SINE Alu 1 307 0 1118 192 139 99 chr12 84800474 84800741 -58985714 + L1MB7 LINE L1 5868 6167 -17 494 269 109 6 chr12 84801149 84801324 -58985131 + MIR SINE MIR 66 258 -4 916 111 0 0 chr12 84801518 84801635 -58984820 + AluSq/x SINE Alu 2 118 -195 274 170 0 0 chr12 84801635 84801682 -58984773 + Alu SINE Alu 253 299 -2 1773 185 3 3 chr12 84801998 84802295 -58984160 - AluJb SINE Alu -15 297 1 354 258 157 28 chr12 84803024 84803241 -58983214 - MIR SINE MIR -17 245 1 2194 113 3 0 chr12 84803762 84804064 -58982391 + AluSx SINE Alu 1 303 -9 1882 127 53 56 chr12 84804300 84804418 -58982037 - L1MA6 LINE L1 -1 6299 6182 1809 158 153 5 chr12 84804418 84804791 -58981664 + MSTA LTR MaLR 1 428 0 1882 127 53 56 chr12 84804791 84804814 -58981641 - L1MA6 LINE L1 -118 6182 6160 2002 157 7 0 chr12 84804814 84805120 -58981335 - AluSx SINE Alu -4 308 1 1882 127 53 56 chr12 84805120 84805370 -58981085 - L1MA6 LINE L1 -140 6160 5908 344 141 0 62 chr12 84805618 84805682 -58980773 + Tigger7 DNA MER2_type 1 60 -279 50 42 0 0 chr12 84805703 84805774 -58980681 + AT_rich Low_complexity Low_complexity 1 71 0 2555 181 18 4 chr12 84805774 84806226 -58980229 + Tigger7 DNA MER2_type 69 526 -1961 552 187 0 0 chr12 84806220 84806311 -58980144 + Tigger7 DNA MER2_type 2396 2486 -1 * 348 363 70 0 chr12 84808306 84808507 -58977948 + L1M4 LINE L1 4015 4229 -1917 1026 237 107 19 chr12 84809781 84810156 -58976299 - L1MC4a LINE L1 -1977 5831 5424 660 249 96 12 chr12 84810278 84810527 -58975928 + L1M4c LINE L1 1219 1488 -4896 29 0 0 0 chr12 84810527 84810556 -58975899 + AT_rich Low_complexity Low_complexity 1 29 0 1865 89 4 0 chr12 84810566 84810812 -58975643 + AluY SINE Alu 1 247 -64 180 309 0 74 chr12 84811834 84811915 -58974540 - L2 LINE L2 -4 3268 3194 716 308 83 26 chr12 84812001 84812423 -58974032 - MER20B DNA MER1_type -307 476 31 202 389 110 28 chr12 84812494 84812849 -58973606 - L2 LINE L2 -2844 470 87 22 0 0 0 chr12 84812849 84812871 -58973584 + AT_rich Low_complexity Low_complexity 1 22 0 341 226 94 9 chr12 84813055 84813161 -58973294 + MER112 DNA MER1_type 134 248 -12 328 301 153 6 chr12 84813163 84813339 -58973116 + MIR SINE MIR 22 223 -39 1187 209 50 46 chr12 84813672 84814127 -58972328 - L1MC5 LINE L1 -53 7908 7452 358 194 28 65 chr12 84814129 84814237 -58972218 + MER58C DNA MER1_type 26 129 -86 1021 161 111 1 chr12 84814254 84814585 -58971870 - L1ME LINE L1 -656 5510 5149 1925 131 33 0 chr12 84814586 84814896 -58971559 - AluSx SINE Alu 0 319 1 547 198 0 108 chr12 84814899 84815066 -58971389 - L1ME LINE L1 -1143 5003 4855 847 215 26 68 chr12 84815075 84815407 -58971048 + AluJb SINE Alu 1 319 0 1486 94 5 0 chr12 84815507 84815708 -58970747 + AluSq SINE Alu 98 299 -14 2230 120 12 24 chr12 84815880 84816221 -58970234 - MER1B DNA MER1_type -2 337 1 1846 147 0 75 chr12 84816405 84816724 -58969731 + AluSq SINE Alu 1 295 -18 1781 200 183 92 chr12 84817008 84817728 -58968727 + LTR1B LTR ERV1 1 983 -37 717 139 62 31 chr12 84818286 84818415 -58968040 + FLAM_C SINE Alu 1 133 0 372 131 52 7 chr12 84818785 84818938 -58967517 + (TA)n Simple_repeat Simple_repeat 1 160 0 21 0 0 0 chr12 84818985 84819006 -58967449 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 84820002 84820028 -58966427 + AT_rich Low_complexity Low_complexity 1 26 0 625 326 82 9 chr12 84820134 84820367 -58966088 + MIR SINE MIR 10 259 -3 1392 179 101 56 chr12 84820557 84820915 -58965540 + MLT1A2 LTR MaLR 1 374 0 781 47 9 0 chr12 84821572 84821679 -58964776 + (TA)n Simple_repeat Simple_repeat 1 108 0 180 0 0 0 chr12 84821678 84821698 -58964757 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 1488 195 35 58 chr12 84821862 84822256 -58964199 - MLT1B LTR MaLR -5 385 1 186 242 226 0 chr12 84822608 84822670 -58963785 + L2 LINE L2 3221 3296 -17 206 231 0 0 chr12 84822672 84822711 -58963744 + GA-rich Low_complexity Low_complexity 2 40 0 1884 211 68 40 chr12 84824308 84824512 -58961943 + MER119 DNA MER1_type 42 239 -344 288 0 0 0 chr12 84824512 84824544 -58961911 + (CA)n Simple_repeat Simple_repeat 1 32 0 1884 211 68 40 chr12 84824544 84824866 -58961589 + MER119 DNA MER1_type 239 583 0 192 327 0 0 chr12 84825011 84825066 -58961389 + L2 LINE L2 352 406 -2908 262 303 92 18 chr12 84825351 84825460 -58960995 + MIR SINE MIR 16 132 -76 21 36 0 0 chr12 84825463 84825491 -58960964 + AT_rich Low_complexity Low_complexity 1 28 0 871 157 27 0 chr12 84825493 84825640 -58960815 - MER46A DNA MER2_type 0 236 86 330 297 85 47 chr12 84825758 84825970 -58960485 + HAL1 LINE L1 387 606 -1901 2317 107 3 0 chr12 84826371 84826679 -58959776 + AluSc SINE Alu 1 309 0 1895 126 44 14 chr12 84827315 84827609 -58958846 - MER1B DNA MER1_type 0 339 37 1323 171 14 47 chr12 84828012 84828287 -58958168 + AluJo SINE Alu 37 302 -10 1593 180 7 14 chr12 84828980 84829275 -58957180 + AluJo SINE Alu 1 293 -19 1787 138 84 31 chr12 84829292 84829612 -58956843 - MER1B DNA MER1_type 0 337 1 601 167 173 40 chr12 84830012 84830162 -58956293 - MER58B DNA MER1_type 0 341 172 198 0 0 0 chr12 84830190 84830212 -58956243 + (A)n Simple_repeat Simple_repeat 1 22 0 305 246 0 0 chr12 84830218 84830275 -58956180 - MER58B DNA MER1_type -284 57 1 417 221 79 15 chr12 84831023 84831164 -58955291 + AluJ/FLAM SINE Alu 2 95 -207 2149 150 53 14 chr12 84831321 84831755 -58954700 + L1MB3 LINE L1 5733 6183 0 21 0 0 0 chr12 84832457 84832478 -58953977 + AT_rich Low_complexity Low_complexity 1 21 0 726 138 0 0 chr12 84832495 84832646 -58953809 - AluSp/q SINE Alu 0 324 174 524 212 59 0 chr12 84832923 84833041 -58953414 + MIR SINE MIR 56 180 -82 766 158 179 5 chr12 84833357 84833541 -58952914 - MER20 DNA MER1_type -3 216 1 2821 232 123 61 chr12 84833779 84834042 -58952413 - HAL1 LINE L1 -10 2497 2252 2456 51 0 63 chr12 84834042 84834374 -58952081 - AluY SINE Alu 0 311 1 2821 232 123 61 chr12 84834374 84834719 -58951736 - HAL1 LINE L1 -255 2252 1930 2043 117 3 7 chr12 84834719 84835019 -58951436 - AluSx SINE Alu -13 299 1 2821 232 123 61 chr12 84835019 84835532 -58950923 - HAL1 LINE L1 -577 1930 1269 2114 123 20 0 chr12 84835532 84835832 -58950623 - AluSg SINE Alu -4 306 1 2821 232 123 61 chr12 84835832 84836105 -58950350 - HAL1 LINE L1 -1238 1269 1014 1655 275 122 40 chr12 84836134 84836985 -58949470 - HAL1 LINE L1 -1586 921 1 586 228 178 5 chr12 84837360 84837562 -58948893 - MER69 DNA AcHobo -3 2523 2287 935 234 26 62 chr12 84837603 84837910 -58948545 - MER69 DNA AcHobo -1699 827 532 2293 301 176 23 chr12 84837910 84838861 -58947594 + L2 LINE L2 548 1352 -1962 1433 233 43 51 chr12 84838861 84839368 -58947087 - MLT1D LTR MaLR 0 505 3 2293 301 176 23 chr12 84839368 84839856 -58946599 + L2 LINE L2 1352 2208 -1106 1746 186 63 25 chr12 84839893 84840429 -58946026 - MLT2A2 LTR ERVL 0 554 3 437 254 70 55 chr12 84840431 84840632 -58945823 + L2 LINE L2 2302 2505 -809 770 301 118 27 chr12 84840640 84841228 -58945227 + L2 LINE L2 2655 3289 -24 230 230 110 55 chr12 84841592 84841683 -58944772 + MIR SINE MIR 66 162 -46 21 0 0 0 chr12 84841703 84841724 -58944731 + AT_rich Low_complexity Low_complexity 1 21 0 1301 184 57 0 chr12 84841727 84841874 -58944581 - AluJo SINE Alu -31 281 115 330 26 0 0 chr12 84841874 84841913 -58944542 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1301 184 57 0 chr12 84841913 84841993 -58944462 - AluJo SINE Alu -197 115 41 2137 130 13 0 chr12 84842223 84842531 -58943924 - AluSx SINE Alu 0 312 1 1390 160 69 56 chr12 84842558 84842846 -58943609 + AluJo SINE Alu 1 292 -20 1553 163 14 35 chr12 84842990 84843278 -58943177 + AluJo SINE Alu 17 298 -14 448 289 123 14 chr12 84843285 84843612 -58942843 + L1ME LINE L1 5329 5699 -467 1907 151 7 3 chr12 84843615 84843913 -58942542 + AluJb SINE Alu 1 299 -13 708 212 8 0 chr12 84845131 84845263 -58941192 + FLAM_A SINE Alu 1 133 0 210 294 118 0 chr12 84845367 84845469 -58940986 - MIR SINE MIR -70 192 79 195 359 0 0 chr12 84846429 84846493 -58939962 + MER5A DNA MER1_type 37 100 -89 1726 147 0 11 chr12 84846550 84846822 -58939633 + AluJb SINE Alu 35 303 -9 21 36 0 0 chr12 84847375 84847403 -58939052 + AT_rich Low_complexity Low_complexity 1 28 0 652 217 9 0 chr12 84847715 84847830 -58938625 - FLAM_A SINE Alu -17 116 1 643 201 35 12 chr12 84849294 84849463 -58936992 + L1MC5 LINE L1 7029 7201 -760 1711 212 59 19 chr12 84849464 84849941 -58936514 + Charlie1b DNA MER1_type 18 513 -10 569 69 11 11 chr12 84849942 84850029 -58936426 + MER4A LTR ERV1 1 87 -577 * 1390 99 43 51 chr12 84850018 84850271 -58936184 + MER4B LTR ERV1 360 610 0 1127 227 119 50 chr12 84850274 84850936 -58935519 + L1MC5 LINE L1 7198 7905 -56 2158 91 4 0 chr12 84850936 84851212 -58935243 - AluSp SINE Alu -6 307 31 1982 111 0 131 chr12 84851498 84851886 -58934569 - MER1B DNA MER1_type 0 337 1 1465 170 113 18 chr12 84852757 84853040 -58933415 - AluSg SINE Alu 0 310 1 184 306 0 0 chr12 84853964 84854000 -58932455 - L2 LINE L2 -35 3237 3202 712 197 8 0 chr12 84854047 84854179 -58932276 + FLAM_A SINE Alu 1 133 0 605 201 65 0 chr12 84854489 84854643 -58931812 - L1M4 LINE L1 -2121 4025 3862 306 173 111 25 chr12 84854707 84854788 -58931667 + MIR SINE MIR 172 259 -3 799 168 16 0 chr12 84854828 84854953 -58931502 + FLAM_A SINE Alu 1 127 -6 463 277 312 16 chr12 84855016 84855449 -58931006 + L2 LINE L2 2406 2966 -348 223 248 67 114 chr12 84855480 84855690 -58930765 + L2 LINE L2 2942 3141 -172 415 197 120 49 chr12 84855796 84856080 -58930375 - L1MC5 LINE L1 -53 7908 7605 2484 58 0 0 chr12 84856116 84856408 -58930047 - AluY SINE Alu -19 292 1 375 288 151 0 chr12 84856581 84856720 -58929735 + LTR50 LTR ERVL 362 521 -274 5598 117 14 21 chr12 84856824 84858135 -58928320 + L1PA15 LINE L1 4371 5673 -492 1865 145 10 19 chr12 84858135 84858446 -58928009 + AluJb SINE Alu 1 308 -4 5598 117 14 21 chr12 84858446 84858936 -58927519 + L1PA15 LINE L1 5673 6165 0 560 231 14 48 chr12 84859132 84859279 -58927176 + MIR SINE MIR 103 244 -18 242 358 54 14 chr12 84859796 84859944 -58926511 + L2 LINE L2 2899 3052 -220 629 248 101 23 chr12 84861513 84861731 -58924724 + MIR SINE MIR 28 262 0 297 306 21 49 chr12 84861739 84861883 -58924572 + L2 LINE L2 2919 3058 -214 848 199 0 0 chr12 84861955 84862101 -58924354 - FRAM SINE Alu -30 146 1 206 176 0 0 chr12 84862815 84862849 -58923606 + MIR3 SINE MIR 151 184 -24 1529 185 38 14 chr12 84863874 84864166 -58922289 + AluJb SINE Alu 1 299 -13 354 123 0 0 chr12 84864166 84864223 -58922232 + (GGGGA)n Simple_repeat Simple_repeat 2 58 0 752 171 62 7 chr12 84864352 84864498 -58921957 + FRAM SINE Alu 1 153 -23 738 219 6 24 chr12 84865186 84865355 -58921100 - AluJb SINE Alu -10 302 137 242 333 51 8 chr12 84866317 84866434 -58920021 - MIR SINE MIR -39 223 102 324 319 136 24 chr12 84866435 84866604 -58919851 - MER5A DNA MER1_type -1 188 1 406 126 0 81 chr12 84866769 84866856 -58919599 + MADE1 DNA Mariner 1 80 0 516 61 37 12 chr12 84867117 84867199 -58919256 + L1MB7 LINE L1 6082 6165 -19 2096 141 0 22 chr12 84867368 84867687 -58918768 + AluSx SINE Alu 1 312 0 562 230 230 17 chr12 84867939 84868113 -58918342 + MIR SINE MIR 41 251 -11 346 252 137 0 chr12 84868959 84869090 -58917365 + MIR SINE MIR 64 212 -50 447 200 45 155 chr12 84869480 84869680 -58916775 + MER5B DNA MER1_type 1 178 0 180 0 0 0 chr12 84871507 84871527 -58914928 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr12 84873056 84873077 -58913378 + GC_rich Low_complexity Low_complexity 1 21 0 278 49 0 24 chr12 84874061 84874102 -58912353 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 197 269 60 15 chr12 84875592 84875659 -58910796 + MIR SINE MIR 76 145 -63 997 63 0 8 chr12 84875670 84875796 -58910659 - AluSc SINE Alu -16 293 169 526 212 59 0 chr12 84876070 84876188 -58910267 + MIR SINE MIR 56 180 -82 772 158 179 5 chr12 84876504 84876688 -58909767 - MER20 DNA MER1_type -3 216 1 2480 233 122 61 chr12 84876926 84877189 -58909266 - HAL1 LINE L1 -10 2497 2252 2464 51 0 63 chr12 84877189 84877521 -58908934 - AluY SINE Alu 0 311 1 2480 233 122 61 chr12 84877521 84877866 -58908589 - HAL1 LINE L1 -255 2252 1930 2054 117 3 7 chr12 84877866 84878166 -58908289 - AluSx SINE Alu -13 299 1 2480 233 122 61 chr12 84878166 84878679 -58907776 - HAL1 LINE L1 -577 1930 1270 2068 127 23 0 chr12 84878679 84878978 -58907477 - AluSg SINE Alu -4 306 1 2480 233 122 61 chr12 84878978 84879252 -58907203 - HAL1 LINE L1 -1237 1270 1014 1400 275 122 40 chr12 84879281 84880132 -58906323 - HAL1 LINE L1 -1586 921 1 529 228 178 5 chr12 84880507 84880709 -58905746 - MER69 DNA AcHobo -3 2523 2287 850 234 26 62 chr12 84880750 84881057 -58905398 - MER69 DNA AcHobo -1699 827 532 2299 301 176 23 chr12 84881057 84882008 -58904447 + L2 LINE L2 548 1352 -1962 1445 231 43 51 chr12 84882008 84882515 -58903940 - MLT1D LTR MaLR 0 505 3 2299 301 176 23 chr12 84882515 84883003 -58903452 + L2 LINE L2 1352 2208 -1106 1641 186 63 25 chr12 84883040 84883576 -58902879 - MLT2A2 LTR ERVL 0 554 3 437 254 70 55 chr12 84883578 84883779 -58902676 + L2 LINE L2 2302 2505 -809 779 301 118 27 chr12 84883787 84884375 -58902080 + L2 LINE L2 2655 3289 -24 230 230 110 55 chr12 84884739 84884830 -58901625 + MIR SINE MIR 66 162 -46 21 0 0 0 chr12 84884850 84884871 -58901584 + AT_rich Low_complexity Low_complexity 1 21 0 1299 184 57 0 chr12 84884874 84885021 -58901434 - AluJo SINE Alu -31 281 115 330 26 0 0 chr12 84885021 84885060 -58901395 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1299 184 57 0 chr12 84885060 84885140 -58901315 - AluJo SINE Alu -197 115 41 2174 130 13 0 chr12 84885370 84885678 -58900777 - AluSx SINE Alu 0 312 1 1417 160 69 56 chr12 84885705 84885993 -58900462 + AluJo SINE Alu 1 292 -20 364 298 51 47 chr12 84885995 84886137 -58900318 + L1ME LINE L1 5179 5324 -822 1584 163 14 35 chr12 84886137 84886425 -58900030 + AluJo SINE Alu 17 298 -14 364 298 51 47 chr12 84886425 84886497 -58899958 + L1ME LINE L1 5324 5394 -752 386 281 115 15 chr12 84886499 84886759 -58899696 + L1ME LINE L1 5414 5702 -462 1932 151 7 3 chr12 84886762 84887060 -58899395 + AluJb SINE Alu 1 299 -13 2236 90 0 0 chr12 84887531 84887820 -58898635 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr12 84887820 84887846 -58898609 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr12 84887982 84888004 -58898451 + (A)n Simple_repeat Simple_repeat 1 22 0 2347 106 6 0 chr12 84888340 84888651 -58897804 - AluSq SINE Alu 0 313 1 553 350 37 5 chr12 84889689 84889739 -58896716 - MIR SINE MIR -13 249 202 2513 165 19 2 chr12 84889739 84890157 -58896298 - MSTB LTR MaLR 0 426 2 553 350 37 5 chr12 84890157 84890323 -58896132 - MIR SINE MIR -60 202 26 205 216 0 78 chr12 84890549 84890600 -58895855 + L2 LINE L2 3219 3265 -7 203 282 101 121 chr12 84891468 84891617 -58894838 - L2 LINE L2 -2 3270 3125 238 255 0 0 chr12 84892253 84892300 -58894155 + (TG)n Simple_repeat Simple_repeat 2 48 0 798 190 32 72 chr12 84892408 84892629 -58893826 - L2 LINE L2 0 3313 3102 587 230 58 92 chr12 84892693 84892905 -58893550 - L1ME LINE L1 -346 5816 5607 2034 123 11 0 chr12 84892905 84893189 -58893266 - AluSx SINE Alu -25 287 1 587 230 58 92 chr12 84893189 84893227 -58893228 - L1ME LINE L1 -555 5607 5569 270 0 0 0 chr12 84893288 84893318 -58893137 + (TG)n Simple_repeat Simple_repeat 2 31 0 200 209 0 0 chr12 84893325 84893368 -58893087 + T-rich Low_complexity Low_complexity 3 45 0 235 241 76 0 chr12 84893544 84893623 -58892832 - L1P LINE L1 -1097 5049 4965 837 135 61 14 chr12 84893632 84893780 -58892675 + THE1B LTR MaLR 1 155 -220 4660 133 53 40 chr12 84893782 84895300 -58891155 + pTR5 LTR ERV1 741 2437 -1 914 171 18 51 chr12 84895303 84895520 -58890935 + THE1B LTR MaLR 155 364 0 195 208 188 0 chr12 84895685 84895733 -58890722 - L2 LINE L2 0 3313 3257 298 235 59 0 chr12 84895853 84895955 -58890500 - L1M4 LINE L1 -1487 4659 4552 1888 127 16 47 chr12 84896076 84896264 -58890191 - AluSx SINE Alu 0 312 137 2288 98 0 3 chr12 84896264 84896569 -58889886 - AluSc SINE Alu -5 304 1 1888 127 16 47 chr12 84896569 84896702 -58889753 - AluSx SINE Alu -175 137 1 413 288 79 0 chr12 84896726 84896865 -58889590 - L1M4 LINE L1 -1863 4283 4134 1769 157 10 24 chr12 84896968 84897261 -58889194 + AluJo SINE Alu 1 289 -23 2047 133 3 10 chr12 84898026 84898319 -58888136 + AluSq SINE Alu 1 291 -22 1644 179 3 42 chr12 84899032 84899194 -58887261 - AluJb SINE Alu -16 296 150 2690 29 7 0 chr12 84899194 84899502 -58886953 - AluY SINE Alu -1 310 1 1644 179 3 42 chr12 84899502 84899647 -58886808 - AluJb SINE Alu -162 150 1 334 248 74 89 chr12 84900622 84900686 -58885769 + MER112 DNA MER1_type 18 81 -179 2115 141 0 0 chr12 84900686 84900985 -58885470 - AluSx SINE Alu -13 299 1 334 248 74 89 chr12 84900985 84901122 -58885333 + MER112 DNA MER1_type 81 216 -44 524 224 245 0 chr12 84901150 84901297 -58885158 - MER5A DNA MER1_type 0 189 7 2283 94 0 0 chr12 84901388 84901674 -58884781 + AluSq SINE Alu 1 286 -27 841 277 143 29 chr12 84901830 84902412 -58884043 - L2 LINE L2 -5 3308 2656 1470 78 41 95 chr12 84902412 84902655 -58883800 - MER30 DNA MER1_type 0 230 1 841 277 143 29 chr12 84902655 84902705 -58883750 - L2 LINE L2 -657 2656 2613 470 243 11 60 chr12 84903211 84903396 -58883059 - MER104 DNA Tc2 -3 177 2 2464 79 3 3 chr12 84903742 84904047 -58882408 - AluSq SINE Alu -8 305 1 2028 169 0 0 chr12 84904143 84904439 -58882016 - AluJb SINE Alu -16 296 1 298 299 159 13 chr12 84904575 84904732 -58881723 + L2 LINE L2 3079 3258 -14 2381 82 3 0 chr12 84904760 84905053 -58881402 + AluSp SINE Alu 7 300 -13 303 200 31 0 chr12 84906160 84906225 -58880230 + FRAM/FAM SINE Alu 21 87 -88 2490 74 0 0 chr12 84906261 84906558 -58879897 - AluY SINE Alu -14 297 1 3667 114 29 67 chr12 84906731 84907447 -58879008 - L1MA8 LINE L1 -4 6287 5599 708 285 35 5 chr12 84907450 84907650 -58878805 + MIR SINE MIR 26 231 -31 391 273 65 13 chr12 84907825 84907979 -58878476 + MIR SINE MIR 89 250 -12 2074 159 0 0 chr12 84908351 84908659 -58877796 + AluSx SINE Alu 1 308 -4 303 280 0 32 chr12 84909660 84909753 -58876702 + MIR SINE MIR 101 190 -72 11022 191 57 20 chr12 84910025 84913199 -58873256 + L1MD1 LINE L1 25 3325 -3215 2058 101 3 18 chr12 84913199 84913520 -58872935 - AluSg SINE Alu 0 317 1 11022 191 57 20 chr12 84913520 84913782 -58872673 + L1MD1 LINE L1 3325 3576 -2964 2560 129 9 5 chr12 84913777 84914218 -58872237 - L1MA8 LINE L1 -350 5950 5508 * 1262 176 38 35 chr12 84914218 84914534 -58871921 + L1MA8 LINE L1 5969 6287 -4 3570 239 55 58 chr12 84914536 84915403 -58871052 + L1MD1 LINE L1 3505 4374 -2262 1605 148 11 30 chr12 84915403 84915674 -58870781 + AluJo SINE Alu 1 266 -46 3570 239 55 58 chr12 84915674 84916612 -58869843 + L1MD1 LINE L1 4374 5314 -1322 1920 148 7 10 chr12 84916612 84916910 -58869545 - AluSg SINE Alu -13 297 1 3570 239 55 58 chr12 84916910 84917321 -58869134 + L1MD1 LINE L1 5314 5672 -964 1504 160 0 34 chr12 84917321 84917590 -58868865 + L1PB4 LINE L1 5896 6155 -1 3570 239 55 58 chr12 84917590 84917919 -58868536 + L1MD1 LINE L1 5672 6001 -635 5406 145 39 31 chr12 84917921 84919342 -58867113 + L1MA4 LINE L1 4865 6299 -1 2987 142 11 60 chr12 84919346 84919483 -58866972 + L1MD1 LINE L1 5987 6129 -507 1488 174 0 45 chr12 84919483 84919748 -58866707 + AluJb SINE Alu 39 291 -21 2987 142 11 60 chr12 84919748 84919826 -58866629 + L1MD1 LINE L1 6129 6209 -427 2363 85 3 0 chr12 84919826 84920119 -58866336 + AluSp SINE Alu 1 294 -19 2987 142 11 60 chr12 84920119 84920515 -58865940 + L1MD1 LINE L1 6209 6569 -67 205 205 0 0 chr12 84920521 84920560 -58865895 + T-rich Low_complexity Low_complexity 1 39 0 189 264 33 66 chr12 84920585 84920676 -58865779 + MIR SINE MIR 87 174 -88 513 293 27 7 chr12 84920993 84921143 -58865312 - MIR3 SINE MIR -46 162 10 2264 98 19 10 chr12 84922366 84922673 -58863782 + AluSx SINE Alu 1 310 -2 1820 155 40 10 chr12 84922853 84923156 -58863299 - AluJb SINE Alu 0 312 1 439 219 21 0 chr12 84923580 84923676 -58862779 + MIR SINE MIR 159 256 -6 2384 104 0 0 chr12 84924090 84924398 -58862057 - AluSc SINE Alu -1 308 1 199 279 0 0 chr12 84925375 84925418 -58861037 + L2 LINE L2 3214 3256 -16 524 297 142 9 chr12 84925421 84925768 -58860687 + L2 LINE L2 2702 3081 -232 1700 144 87 35 chr12 84925768 84926115 -58860340 + MLT1A1 LTR MaLR 1 365 0 2166 109 0 35 chr12 84926153 84926318 -58860137 - AluSx SINE Alu -12 300 150 2147 130 7 0 chr12 84926318 84926611 -58859844 - AluSp SINE Alu -18 295 1 2166 109 0 35 chr12 84926611 84926756 -58859699 - AluSx SINE Alu -162 150 1 396 280 113 36 chr12 84926764 84926932 -58859523 + L2 LINE L2 3119 3299 -14 567 329 169 17 chr12 84927164 84927459 -58858996 - L2 LINE L2 0 3272 2933 1281 164 11 11 chr12 84927582 84927862 -58858593 + L1MA4A LINE L1 5841 6120 -183 524 153 27 9 chr12 84927863 84927974 -58858481 + L1MA4A LINE L1 6183 6295 -8 1706 160 38 11 chr12 84927978 84928265 -58858190 + AluJb SINE Alu 1 295 -17 451 189 105 0 chr12 84928677 84928772 -58857683 - L2 LINE L2 -12 3301 3197 264 148 19 37 chr12 84929205 84929259 -58857196 + L2 LINE L2 3261 3313 0 2011 120 3 41 chr12 84929807 84930124 -58856331 - AluSg1 SINE Alu -1 308 4 1914 165 7 0 chr12 84930358 84930661 -58855794 + AluJb SINE Alu 2 306 -6 334 297 83 21 chr12 84930818 84930963 -58855492 + L1ME LINE L1 141 294 -5911 969 205 78 34 chr12 84930963 84931322 -58855133 + MSTC LTR MaLR 1 428 0 456 335 52 19 chr12 84931322 84931591 -58854864 + L1ME LINE L1 290 567 -5638 2132 122 0 10 chr12 84931640 84931944 -58854511 + AluSx SINE Alu 1 301 -11 818 282 100 27 chr12 84932240 84932988 -58853467 + L1ME LINE L1 602 1577 -4819 506 249 100 25 chr12 84933072 84933092 -58853363 + L1ME LINE L1 1806 1823 -4573 1654 216 39 65 chr12 84933092 84933611 -58852844 - MLT1D LTR MaLR 0 505 1 506 249 100 25 chr12 84933611 84933831 -58852624 + L1ME LINE L1 1823 2064 -4332 300 182 18 0 chr12 84933831 84933886 -58852569 + Charlie6 DNA MER1_type 1 56 -3444 8561 185 67 37 chr12 84933891 84935187 -58851268 + Charlie6 DNA MER1_type 337 1593 -1907 2226 113 3 0 chr12 84935187 84935480 -58850975 + AluSc SINE Alu 9 302 -7 8561 185 67 37 chr12 84935480 84935676 -58850779 + Charlie6 DNA MER1_type 1593 1782 -1718 1705 174 0 38 chr12 84935676 84935992 -58850463 - AluJb SINE Alu -8 304 1 8561 185 67 37 chr12 84935992 84936460 -58849995 + Charlie6 DNA MER1_type 1782 2235 -1265 192 40 0 0 chr12 84936460 84936485 -58849970 + (GA)n Simple_repeat Simple_repeat 2 26 0 8561 185 67 37 chr12 84936485 84936520 -58849935 + Charlie6 DNA MER1_type 2235 2267 -1233 2202 120 3 7 chr12 84936520 84936821 -58849634 + AluSx SINE Alu 1 300 -12 8561 185 67 37 chr12 84936821 84936935 -58849520 + Charlie6 DNA MER1_type 2267 2512 -988 552 283 71 7 chr12 84936969 84937266 -58849189 - L1MEc LINE L1 -4416 1980 1665 2393 95 3 0 chr12 84937309 84937614 -58848841 + AluSx SINE Alu 1 306 -6 607 274 261 3 chr12 84937614 84937921 -58848534 - L2 LINE L2 -1166 2148 1763 1099 247 21 6 chr12 84938475 84939019 -58847436 - MLT2E LTR ERVL -8 620 32 2239 78 3 42 chr12 84939022 84939330 -58847125 + AluY SINE Alu 3 298 -13 2517 219 75 15 chr12 84939401 84940192 -58846263 + L1M4 LINE L1 3509 4346 -1800 404 297 180 17 chr12 84940231 84940531 -58845924 + L1M4 LINE L1 4622 4970 -1176 288 0 0 0 chr12 84940531 84940563 -58845892 + (CA)n Simple_repeat Simple_repeat 1 32 0 2146 132 3 0 chr12 84940860 84941171 -58845284 + AluSq SINE Alu 1 312 -1 7172 48 3 1 chr12 84941171 84942505 -58843950 + L1PA5 LINE L1 4809 6145 -9 2347 92 0 0 chr12 84942563 84942869 -58843586 - AluY SINE Alu -5 306 1 2297 86 3 16 chr12 84942926 84943239 -58843216 - AluSx SINE Alu -3 309 1 72 40 0 0 chr12 84943762 84943862 -58842593 + AT_rich Low_complexity Low_complexity 1 100 0 331 243 83 55 chr12 84943892 84944073 -58842382 + L1ME4a LINE L1 5935 6120 -1 402 288 80 6 chr12 84944218 84944381 -58842074 + L1M4 LINE L1 4672 4846 -1300 1044 317 56 26 chr12 84944434 84945056 -58841399 + L1MCc LINE L1 24 664 -5759 2038 234 89 53 chr12 84945083 84946314 -58840141 + L1MCc LINE L1 796 2105 -4836 25 0 0 0 chr12 84946512 84946537 -58839918 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 84946589 84946611 -58839844 + AT_rich Low_complexity Low_complexity 1 22 0 902 329 84 30 chr12 84946929 84947093 -58839362 - L2 LINE L2 -32 3281 3127 1938 72 8 0 chr12 84947093 84947330 -58839125 + AluSc SINE Alu 1 239 -70 902 329 84 30 chr12 84947330 84947606 -58838849 - L2 LINE L2 -186 3127 2817 25 31 0 0 chr12 84947740 84947772 -58838683 + AT_rich Low_complexity Low_complexity 1 32 0 637 233 116 29 chr12 84948178 84948350 -58838105 - MER5A DNA MER1_type 0 189 3 690 216 16 0 chr12 84949004 84949129 -58837326 + MER5A DNA MER1_type 1 127 -62 1560 141 70 37 chr12 84949131 84949430 -58837025 - AluJo SINE Alu -3 309 1 439 308 157 0 chr12 84949475 84949673 -58836782 + L1M4 LINE L1 4056 4284 -1862 1888 127 16 47 chr12 84949696 84949829 -58836626 + AluSx SINE Alu 1 137 -175 2288 98 0 3 chr12 84949829 84950134 -58836321 + AluSc SINE Alu 1 304 -5 1888 127 16 47 chr12 84950134 84950322 -58836133 + AluSx SINE Alu 137 312 0 298 235 59 0 chr12 84950443 84950545 -58835910 + L1M4 LINE L1 4552 4659 -1487 195 208 188 0 chr12 84950665 84950713 -58835742 + L2 LINE L2 3257 3313 0 914 171 18 51 chr12 84950878 84951095 -58835360 - THE1B LTR MaLR 0 364 155 4660 131 52 39 chr12 84951098 84952616 -58833839 - pTR5 LTR ERV1 -1 2437 741 837 135 61 14 chr12 84952618 84952766 -58833689 - THE1B LTR MaLR -220 155 1 235 241 76 0 chr12 84952775 84952854 -58833601 + L1P LINE L1 4965 5049 -1097 200 209 0 0 chr12 84953030 84953073 -58833382 + A-rich Low_complexity Low_complexity 3 45 0 270 0 0 0 chr12 84953080 84953110 -58833345 + (CA)n Simple_repeat Simple_repeat 2 31 0 587 230 58 92 chr12 84953171 84953209 -58833246 + L1ME LINE L1 5569 5607 -555 2034 123 11 0 chr12 84953209 84953493 -58832962 + AluSx SINE Alu 1 287 -25 587 230 58 92 chr12 84953493 84953705 -58832750 + L1ME LINE L1 5607 5816 -346 803 195 32 72 chr12 84953769 84953990 -58832465 + L2 LINE L2 3102 3313 0 238 255 0 0 chr12 84954098 84954145 -58832310 + (CA)n Simple_repeat Simple_repeat 2 48 0 203 282 101 121 chr12 84954781 84954930 -58831525 + L2 LINE L2 3125 3270 -2 205 216 0 78 chr12 84955799 84955850 -58830605 - L2 LINE L2 -7 3265 3219 553 350 37 5 chr12 84956076 84956242 -58830213 + MIR SINE MIR 26 202 -60 2513 165 19 2 chr12 84956242 84956660 -58829795 + MSTB LTR MaLR 2 426 0 553 350 37 5 chr12 84956660 84956710 -58829745 + MIR SINE MIR 202 249 -13 2347 106 6 0 chr12 84957748 84958059 -58828396 + AluSq SINE Alu 1 313 0 207 0 0 0 chr12 84958395 84958418 -58828037 + (T)n Simple_repeat Simple_repeat 1 23 0 2292 101 0 0 chr12 84958559 84958866 -58827589 - AluSx SINE Alu -5 307 1 551 167 173 40 chr12 84959672 84959822 -58826633 - MER58B DNA MER1_type 0 341 172 198 0 0 0 chr12 84959850 84959872 -58826583 + (A)n Simple_repeat Simple_repeat 1 22 0 284 246 0 0 chr12 84959878 84959935 -58826520 - MER58B DNA MER1_type -284 57 1 400 216 80 0 chr12 84960736 84960824 -58825631 + AluJ/FLAM SINE Alu 1 95 -217 2118 150 53 14 chr12 84960980 84961414 -58825041 + L1MB3 LINE L1 5733 6183 0 21 0 0 0 chr12 84962116 84962137 -58824318 + AT_rich Low_complexity Low_complexity 1 21 0 1937 120 29 4 chr12 84962154 84962471 -58823984 - AluSq SINE Alu 0 324 1 2352 84 3 0 chr12 84962615 84962914 -58823541 - AluSp SINE Alu -13 300 1 1632 135 106 31 chr12 84963695 84964044 -58822411 - THE1C LTR MaLR 0 375 1 308 323 146 0 chr12 84964258 84964388 -58822067 + MER5A DNA MER1_type 41 189 0 283 283 214 35 chr12 84964560 84964705 -58821750 + MER5B DNA MER1_type 5 175 -3 199 279 29 29 chr12 84964740 84964808 -58821647 - MER5A DNA MER1_type -77 112 45 221 339 222 17 chr12 84964941 84965121 -58821334 - L2 LINE L2 -36 3236 3020 413 335 128 44 chr12 84965348 84965807 -58820648 - L2 LINE L2 -580 2734 2237 876 256 127 12 chr12 84965822 84966146 -58820309 + L1MEc LINE L1 36 396 -6000 825 201 95 71 chr12 84966215 84966563 -58819892 + L1ME1 LINE L1 5817 6166 0 445 83 0 0 chr12 84966651 84966711 -58819744 + AluY SINE Alu 7 66 -244 3617 154 7 11 chr12 84966829 84967927 -58818528 + L1P4 LINE L1 4582 5675 -490 1465 170 113 18 chr12 84967930 84968213 -58818242 + AluSg SINE Alu 1 310 0 1911 72 0 12 chr12 84968972 84969223 -58817232 + AluY SINE Alu 47 294 -17 215 306 8 60 chr12 84969271 84969405 -58817050 - L2 LINE L2 -1220 2094 1968 1886 122 12 0 chr12 84970123 84970377 -58816078 - AluSq SINE Alu -56 257 1 237 65 0 0 chr12 84970389 84970420 -58816035 + (A)n Simple_repeat Simple_repeat 1 31 0 286 133 0 0 chr12 84970432 84970477 -58815978 + Alu SINE Alu 1 45 -255 1996 125 11 0 chr12 84970632 84970913 -58815542 + AluSx SINE Alu 1 284 -28 212 357 24 0 chr12 84972228 84972312 -58814143 + MIR3 SINE MIR 110 195 -13 199 279 0 0 chr12 84972824 84972867 -58813588 + L2 LINE L2 3214 3256 -16 524 297 142 9 chr12 84972870 84973217 -58813238 + L2 LINE L2 2702 3081 -232 1700 144 87 35 chr12 84973217 84973564 -58812891 + MLT1A1 LTR MaLR 1 365 0 2166 109 0 35 chr12 84973602 84973767 -58812688 - AluSx SINE Alu -12 300 150 2147 130 7 0 chr12 84973767 84974060 -58812395 - AluSp SINE Alu -18 295 1 2166 109 0 35 chr12 84974060 84974205 -58812250 - AluSx SINE Alu -162 150 1 396 280 113 36 chr12 84974213 84974381 -58812074 + L2 LINE L2 3119 3299 -14 567 329 169 17 chr12 84974613 84974908 -58811547 - L2 LINE L2 0 3272 2933 1281 164 11 11 chr12 84975031 84975311 -58811144 + L1MA4A LINE L1 5841 6120 -183 524 153 27 9 chr12 84975312 84975423 -58811032 + L1MA4A LINE L1 6183 6295 -8 1706 160 38 11 chr12 84975427 84975714 -58810741 + AluJb SINE Alu 1 295 -17 451 189 105 0 chr12 84976126 84976221 -58810234 - L2 LINE L2 -12 3301 3197 264 148 19 37 chr12 84976655 84976709 -58809746 + L2 LINE L2 3261 3313 0 2116 119 0 38 chr12 84977257 84977577 -58808878 - AluSg1 SINE Alu -1 308 1 1957 164 3 0 chr12 84977807 84978111 -58808344 + AluJb SINE Alu 2 306 -6 334 297 83 21 chr12 84978268 84978413 -58808042 + L1ME LINE L1 141 294 -5911 969 204 79 33 chr12 84978413 84978771 -58807684 + MSTC LTR MaLR 1 428 0 456 335 52 19 chr12 84978771 84979040 -58807415 + L1ME LINE L1 290 567 -5638 2167 122 0 7 chr12 84979089 84979392 -58807063 + AluSx SINE Alu 1 301 -11 818 282 100 27 chr12 84979688 84980436 -58806019 + L1ME LINE L1 602 1577 -4819 506 249 100 25 chr12 84980520 84980540 -58805915 + L1ME LINE L1 1806 1823 -4573 1654 216 39 65 chr12 84980540 84981059 -58805396 - MLT1D LTR MaLR 0 505 1 506 249 100 25 chr12 84981059 84981279 -58805176 + L1ME LINE L1 1823 2064 -4332 300 182 18 0 chr12 84981279 84981334 -58805121 + Charlie6 DNA MER1_type 1 56 -3444 8576 185 67 37 chr12 84981339 84982635 -58803820 + Charlie6 DNA MER1_type 337 1593 -1907 2242 116 0 0 chr12 84982635 84982929 -58803526 + AluSc SINE Alu 9 302 -7 8576 185 67 37 chr12 84982929 84983125 -58803330 + Charlie6 DNA MER1_type 1593 1782 -1718 1705 174 0 38 chr12 84983125 84983441 -58803014 - AluJb SINE Alu -8 304 1 8576 185 67 37 chr12 84983441 84983909 -58802546 + Charlie6 DNA MER1_type 1782 2235 -1265 192 40 0 0 chr12 84983909 84983934 -58802521 + (GA)n Simple_repeat Simple_repeat 2 26 0 8576 185 67 37 chr12 84983934 84983969 -58802486 + Charlie6 DNA MER1_type 2235 2267 -1233 2202 120 3 7 chr12 84983969 84984270 -58802185 + AluSx SINE Alu 1 300 -12 8576 185 67 37 chr12 84984270 84984384 -58802071 + Charlie6 DNA MER1_type 2267 2512 -988 2038 254 86 48 chr12 84984418 84984758 -58801697 - L1MCc LINE L1 -4416 2706 2380 2398 99 0 0 chr12 84984758 84985062 -58801393 + AluSx SINE Alu 1 304 -8 2038 254 86 48 chr12 84985062 84986338 -58800117 - L1MCc LINE L1 -4742 2380 796 1102 310 58 24 chr12 84986365 84986985 -58799470 - L1MCc LINE L1 -5759 664 24 402 288 80 6 chr12 84987038 84987201 -58799254 - L1M4 LINE L1 -1300 4846 4672 331 243 83 55 chr12 84987346 84987527 -58798928 - L1ME4a LINE L1 -1 6120 5935 72 40 0 0 chr12 84987557 84987657 -58798798 + AT_rich Low_complexity Low_complexity 1 100 0 2297 86 3 16 chr12 84988180 84988493 -58797962 + AluSx SINE Alu 1 309 -3 2347 92 0 0 chr12 84988550 84988856 -58797599 + AluY SINE Alu 1 306 -5 6519 62 3 21 chr12 84988914 84990267 -58796188 - L1PA5 LINE L1 -9 6145 4809 2196 125 3 0 chr12 84990267 84990578 -58795877 - AluSq SINE Alu -1 312 1 288 0 0 0 chr12 84990875 84990907 -58795548 + (TG)n Simple_repeat Simple_repeat 1 32 0 404 297 180 17 chr12 84990907 84991207 -58795248 - L1M4 LINE L1 -1176 4970 4622 2517 219 75 15 chr12 84991246 84992037 -58794418 - L1M4 LINE L1 -1800 4346 3509 2274 78 0 42 chr12 84992108 84992416 -58794039 - AluY SINE Alu -14 297 3 1099 247 21 6 chr12 84992419 84992963 -58793492 + MLT2E LTR ERVL 32 620 -8 2319 258 225 25 chr12 84993517 84993824 -58792631 + L2 LINE L2 1763 2007 -1306 2530 76 0 0 chr12 84993824 84994127 -58792328 - AluSc SINE Alu -6 303 1 2319 258 225 25 chr12 84994127 84995086 -58791369 + L2 LINE L2 2007 3291 -22 870 203 21 42 chr12 84996056 84996120 -58790335 - MER5A DNA MER1_type -1 188 124 1582 143 67 37 chr12 84996120 84996420 -58790035 + AluJo SINE Alu 1 309 -3 870 203 21 42 chr12 84996420 84996547 -58789908 - MER5A DNA MER1_type -65 124 1 626 233 116 29 chr12 84997201 84997373 -58789082 + MER5A DNA MER1_type 3 189 0 25 31 0 0 chr12 84997779 84997811 -58788644 + AT_rich Low_complexity Low_complexity 1 32 0 893 329 84 30 chr12 84997945 84998221 -58788234 + L2 LINE L2 2817 3127 -186 1901 72 8 0 chr12 84998221 84998458 -58787997 - AluSc SINE Alu -70 239 1 893 329 84 30 chr12 84998458 84998622 -58787833 + L2 LINE L2 3127 3281 -32 407 271 115 16 chr12 84998763 84998885 -58787570 - L2 LINE L2 0 3272 3139 22 35 0 0 chr12 84999234 84999263 -58787192 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 85000485 85000505 -58785950 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2480 50 20 0 chr12 85000613 85000914 -58785541 + AluY SINE Alu 1 307 -4 190 291 0 55 chr12 85001119 85001174 -58785281 + MIR3 SINE MIR 111 162 -46 22 0 0 0 chr12 85001572 85001594 -58784861 + AT_rich Low_complexity Low_complexity 1 22 0 1897 102 4 8 chr12 85002426 85002690 -58783765 - AluSx SINE Alu -11 301 39 207 211 0 28 chr12 85005137 85005208 -58781247 + A-rich Low_complexity Low_complexity 2 70 0 22 94 0 0 chr12 85006438 85006502 -58779953 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr12 85007731 85007753 -58778702 + AT_rich Low_complexity Low_complexity 1 22 0 1598 191 3 13 chr12 85009341 85009656 -58776799 + AluJo SINE Alu 1 312 0 21 0 0 0 chr12 85009990 85010011 -58776444 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 85010159 85010195 -58776260 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr12 85010745 85010796 -58775659 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 85011201 85011222 -58775233 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr12 85012048 85012078 -58774377 + (A)n Simple_repeat Simple_repeat 1 30 0 1620 174 3 43 chr12 85012596 85012900 -58773555 + AluJb SINE Alu 1 292 -20 2109 88 3 11 chr12 85014054 85014359 -58772096 - AluSx SINE Alu 0 303 1 22 35 0 0 chr12 85014863 85014892 -58771563 + AT_rich Low_complexity Low_complexity 1 29 0 284 297 62 62 chr12 85015019 85015164 -58771291 + MER103 DNA DNA 22 166 0 342 263 111 35 chr12 85016072 85016243 -58770212 + Charlie8 DNA MER1_type 43 226 -2191 429 331 116 67 chr12 85016465 85016926 -58769529 + L2 LINE L2 2564 3042 -230 2089 101 7 7 chr12 85016935 85017231 -58769224 - AluSp SINE Alu -17 296 1 1720 162 17 7 chr12 85018364 85018654 -58767801 - AluJb SINE Alu -19 293 1 575 277 12 24 chr12 85018747 85018913 -58767542 + MER104 DNA Tc2 14 177 -3 1288 186 20 48 chr12 85019199 85019494 -58766961 - AluJo SINE Alu -13 299 13 706 187 157 23 chr12 85020492 85020754 -58765701 - MER97b DNA MER1_type? -261 792 496 1720 171 3 3 chr12 85020761 85021048 -58765407 - AluJo SINE Alu -25 287 1 1398 166 55 7 chr12 85021072 85021362 -58765093 - L1MB2 LINE L1 -7 6164 5861 22 35 0 0 chr12 85021885 85021914 -58764541 + AT_rich Low_complexity Low_complexity 1 29 0 538 295 49 6 chr12 85022971 85023154 -58763301 - L1ME1 LINE L1 -12 6154 5964 371 216 29 79 chr12 85023404 85023543 -58762912 + L1MC5 LINE L1 7687 7818 -143 381 214 175 0 chr12 85024005 85024159 -58762296 + L1M4 LINE L1 2254 2434 -3712 21 36 0 0 chr12 85024195 85024223 -58762232 + AT_rich Low_complexity Low_complexity 1 28 0 658 290 52 20 chr12 85024293 85024541 -58761914 + L1ME3A LINE L1 5910 6165 -5 213 231 0 0 chr12 85025144 85025183 -58761272 + polypyrimidine Low_complexity Low_complexity 3 41 0 717 204 142 24 chr12 85025253 85025464 -58760991 - Charlie8 DNA MER1_type -2134 283 48 248 211 13 0 chr12 85026673 85026749 -58759706 + CT-rich Low_complexity Low_complexity 3 79 0 231 239 0 0 chr12 85027099 85027166 -58759289 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 24 0 0 0 chr12 85028191 85028215 -58758240 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr12 85028241 85028271 -58758184 + AT_rich Low_complexity Low_complexity 1 30 0 196 229 16 33 chr12 85028505 85028561 -58757894 - L3 LINE CR1 -298 1279 1224 2166 117 0 3 chr12 85028561 85028869 -58757586 - AluSx SINE Alu -3 309 3 366 287 258 21 chr12 85028914 85029149 -58757306 - L3 LINE CR1 -619 958 780 1391 181 43 7 chr12 85029149 85029431 -58757024 + AluJb SINE Alu 1 292 -20 366 287 258 21 chr12 85029431 85029575 -58756880 - L3 LINE CR1 -797 780 489 2389 130 92 7 chr12 85029600 85030050 -58756405 + Tigger2 DNA MER2_type 1 2718 0 1643 60 10 0 chr12 85030155 85030354 -58756101 - AluY SINE Alu -12 299 99 287 266 62 23 chr12 85030549 85030677 -58755778 - L1M2 LINE L1 -860 5440 5308 470 312 142 16 chr12 85030677 85030924 -58755531 - L2 LINE L2 -3 3310 3033 216 182 0 0 chr12 85031766 85031810 -58754645 + (TATG)n Simple_repeat Simple_repeat 1 44 0 26 0 0 0 chr12 85031887 85031913 -58754542 + AT_rich Low_complexity Low_complexity 1 26 0 185 280 27 53 chr12 85032005 85032080 -58754375 + MIR SINE MIR 20 92 -170 31 76 0 0 chr12 85032111 85032177 -58754278 + AT_rich Low_complexity Low_complexity 1 66 0 1713 147 4 18 chr12 85032272 85032551 -58753904 + AluSx SINE Alu 35 309 -3 228 35 0 0 chr12 85032744 85032773 -58753682 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1203 203 72 38 chr12 85032959 85033249 -58753206 - AluJo SINE Alu -2 300 1 2138 156 69 10 chr12 85033765 85034169 -58752286 + MSTA LTR MaLR 1 428 0 6844 210 78 30 chr12 85034570 85035315 -58751140 - L1MDa LINE L1 -4664 1876 1168 1966 158 0 16 chr12 85035315 85035632 -58750823 - AluJb SINE Alu 0 312 1 6844 210 78 30 chr12 85035632 85036611 -58749844 - L1MDa LINE L1 -5372 1168 69 907 243 102 62 chr12 85036950 85037350 -58749105 + HsTC2a DNA Tc2 7 422 -322 24 0 0 0 chr12 85037402 85037426 -58749029 + AT_rich Low_complexity Low_complexity 1 24 0 332 261 185 34 chr12 85037675 85037794 -58748661 + MIR SINE MIR 2 138 -124 1482 184 9 32 chr12 85037794 85038109 -58748346 - AluJo SINE Alu -4 308 1 2300 64 0 0 chr12 85038117 85038424 -58748031 - AluY SINE Alu 0 307 1 1372 91 25 0 chr12 85038534 85038731 -58747724 - L1P4 LINE L1 -429 5736 5535 745 233 99 34 chr12 85038741 85039003 -58747452 - MER46C DNA MER2_type -54 284 6 185 286 0 48 chr12 85039038 85039101 -58747354 + MIR SINE MIR 200 259 -3 4290 38 21 0 chr12 85040199 85040720 -58745735 + L1PA3 LINE L1 5623 6154 -1 31 0 0 0 chr12 85040720 85040751 -58745704 + AT_rich Low_complexity Low_complexity 1 31 0 217 263 10 121 chr12 85040751 85040850 -58745605 + L2 LINE L2 3021 3108 -164 690 331 36 20 chr12 85041500 85041748 -58744707 - MIR SINE MIR -10 252 1 827 285 48 100 chr12 85041836 85042229 -58744226 - L2 LINE L2 -349 2965 2600 1954 109 0 7 chr12 85042229 85042503 -58743952 + AluY SINE Alu 40 311 0 827 285 48 100 chr12 85042503 85042589 -58743866 - L2 LINE L2 -714 2600 2511 1407 198 10 40 chr12 85042762 85043060 -58743395 + AluJo SINE Alu 1 289 -23 555 271 18 6 chr12 85043538 85043704 -58742751 + L1MC5 LINE L1 5769 5936 -1872 25 31 0 0 chr12 85043835 85043867 -58742588 + AT_rich Low_complexity Low_complexity 1 32 0 780 163 108 102 chr12 85044176 85044471 -58741984 + L1MC5 LINE L1 6647 6943 -1018 22487 93 13 14 chr12 85044483 85050276 -58736179 + L1P2 LINE L1 11 5808 -346 287 388 62 0 chr12 85051708 85051886 -58734569 + MIR3 SINE MIR 16 204 -4 328 315 125 53 chr12 85054402 85054688 -58731767 + L1ME4a LINE L1 5625 5944 -177 2128 119 7 0 chr12 85054688 85054991 -58731464 + AluSg1 SINE Alu 1 305 -4 328 315 125 53 chr12 85054991 85055063 -58731392 + L1ME4a LINE L1 5944 6009 -112 376 221 63 89 chr12 85055166 85055324 -58731131 + L2 LINE L2 2833 2986 -327 24 0 0 0 chr12 85055944 85055968 -58730487 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 85058066 85058087 -58728368 + AT_rich Low_complexity Low_complexity 1 21 0 566 293 88 0 chr12 85058253 85058400 -58728055 + MER119 DNA MER1_type 1 160 -423 342 218 59 20 chr12 85058400 85058501 -58727954 + MER119 DNA MER1_type 474 578 -5 226 170 94 0 chr12 85058608 85058661 -58727794 - MER58 DNA MER1_type -121 220 163 339 220 0 0 chr12 85058692 85058751 -58727704 - MER58 DNA MER1_type -154 61 3 396 316 44 7 chr12 85058908 85059044 -58727411 - MIR SINE MIR -6 256 116 188 308 109 95 chr12 85059163 85059312 -58727143 + L2 LINE L2 1944 2089 -1225 330 26 0 0 chr12 85059312 85059351 -58727104 + (TG)n Simple_repeat Simple_repeat 2 40 0 188 308 109 95 chr12 85059351 85059369 -58727086 + L2 LINE L2 2089 2105 -1209 210 37 0 0 chr12 85059369 85059396 -58727059 + (TG)n Simple_repeat Simple_repeat 2 28 0 188 308 109 95 chr12 85059396 85060019 -58726436 + L2 LINE L2 2105 2746 -568 2546 69 0 0 chr12 85061125 85061431 -58725024 + AluY SINE Alu 1 306 -5 2407 94 3 0 chr12 85061463 85061771 -58724684 + AluSq SINE Alu 1 309 -4 1804 125 68 0 chr12 85062188 85062469 -58723986 + AluSg SINE Alu 2 301 -9 443 279 40 36 chr12 85063158 85063380 -58723075 + L1MC4 LINE L1 7708 7930 -112 227 177 32 16 chr12 85063560 85063622 -58722833 + GA-rich Low_complexity Low_complexity 3 65 0 332 276 20 41 chr12 85063717 85063815 -58722640 - MIR SINE MIR -148 114 19 180 273 144 15 chr12 85065026 85065158 -58721297 - L2 LINE L2 -6 3307 3159 1581 187 11 7 chr12 85065191 85065475 -58720980 - AluJb SINE Alu -27 285 1 257 311 182 8 chr12 85066152 85066284 -58720171 - MIR3 SINE MIR -13 195 41 1067 186 52 14 chr12 85066592 85066802 -58719653 + AluJo SINE Alu 1 218 -94 21 0 0 0 chr12 85067517 85067538 -58718917 + AT_rich Low_complexity Low_complexity 1 21 0 1975 125 10 3 chr12 85068404 85068700 -58717755 + AluSx SINE Alu 1 298 -14 2526 175 52 7 chr12 85069331 85069868 -58716587 - L1MB8 LINE L1 0 6178 5618 1846 152 24 7 chr12 85070526 85070822 -58715633 - AluJb SINE Alu -11 301 1 302 244 72 36 chr12 85071934 85072081 -58714374 - MIR SINE MIR -63 145 44 30 45 0 0 chr12 85072977 85073021 -58713434 + AT_rich Low_complexity Low_complexity 1 44 0 1007 151 18 0 chr12 85073272 85073438 -58713017 - FRAM SINE Alu -8 168 1 1623 175 28 0 chr12 85074716 85075001 -58711454 + AluJo SINE Alu 1 293 -19 22 0 0 0 chr12 85075512 85075534 -58710921 + AT_rich Low_complexity Low_complexity 1 22 0 287 388 62 0 chr12 85076992 85077170 -58709285 + MIR3 SINE MIR 16 204 -4 326 324 134 35 chr12 85079684 85079968 -58706487 + L1ME4a LINE L1 5625 5936 -185 2172 118 3 0 chr12 85079970 85080274 -58706181 + AluSg1 SINE Alu 1 305 -4 24 0 0 0 chr12 85080274 85080298 -58706157 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr12 85080320 85080363 -58706092 + AT_rich Low_complexity Low_complexity 1 43 0 376 221 63 89 chr12 85080449 85080607 -58705848 + L2 LINE L2 2833 2986 -327 24 0 0 0 chr12 85081228 85081252 -58705203 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 85083350 85083371 -58703084 + AT_rich Low_complexity Low_complexity 1 21 0 566 293 88 0 chr12 85083537 85083684 -58702771 + MER119 DNA MER1_type 1 160 -423 342 218 59 20 chr12 85083684 85083785 -58702670 + MER119 DNA MER1_type 474 578 -5 226 170 94 0 chr12 85083892 85083945 -58702510 - MER58 DNA MER1_type -121 220 163 339 220 0 0 chr12 85083976 85084035 -58702420 - MER58 DNA MER1_type -154 61 3 396 316 44 7 chr12 85084192 85084328 -58702127 - MIR SINE MIR -6 256 116 215 309 109 94 chr12 85084447 85084595 -58701860 + L2 LINE L2 1944 2088 -1226 330 26 0 0 chr12 85084595 85084634 -58701821 + (TG)n Simple_repeat Simple_repeat 2 40 0 215 309 109 94 chr12 85084634 85084652 -58701803 + L2 LINE L2 2088 2104 -1210 210 37 0 0 chr12 85084652 85084679 -58701776 + (TG)n Simple_repeat Simple_repeat 2 28 0 215 309 109 94 chr12 85084679 85085302 -58701153 + L2 LINE L2 2104 2746 -568 2405 72 3 7 chr12 85086408 85086715 -58699740 + AluY SINE Alu 1 306 -5 2407 94 3 0 chr12 85086747 85087055 -58699400 + AluSq SINE Alu 1 309 -4 1804 125 68 0 chr12 85087472 85087753 -58698702 + AluSg SINE Alu 2 301 -9 443 279 40 36 chr12 85088442 85088664 -58697791 + L1MC4 LINE L1 7708 7930 -112 227 177 32 16 chr12 85088844 85088906 -58697549 + GA-rich Low_complexity Low_complexity 3 65 0 332 276 20 41 chr12 85089001 85089099 -58697356 - MIR SINE MIR -148 114 19 329 244 145 8 chr12 85090308 85090439 -58696016 - L2 LINE L2 -6 3307 3159 1581 187 11 7 chr12 85090472 85090756 -58695699 - AluJb SINE Alu -27 285 1 257 311 182 8 chr12 85091433 85091565 -58694890 - MIR3 SINE MIR -13 195 41 1067 186 52 14 chr12 85091873 85092083 -58694372 + AluJo SINE Alu 1 218 -94 21 0 0 0 chr12 85092798 85092819 -58693636 + AT_rich Low_complexity Low_complexity 1 21 0 1975 125 10 3 chr12 85093684 85093980 -58692475 + AluSx SINE Alu 1 298 -14 2526 175 52 7 chr12 85094611 85095148 -58691307 - L1MB8 LINE L1 0 6178 5618 1846 152 24 7 chr12 85095806 85096102 -58690353 - AluJb SINE Alu -11 301 1 302 244 72 36 chr12 85097213 85097360 -58689095 - MIR SINE MIR -63 145 44 30 45 0 0 chr12 85098256 85098300 -58688155 + AT_rich Low_complexity Low_complexity 1 44 0 1020 151 18 0 chr12 85098551 85098717 -58687738 - FRAM SINE Alu -8 168 1 23 0 0 0 chr12 85099519 85099542 -58686913 + AT_rich Low_complexity Low_complexity 1 23 0 199 355 33 50 chr12 85099937 85100058 -58686397 + MIR3 SINE MIR 85 203 -5 24 0 0 0 chr12 85100412 85100436 -58686019 + AT_rich Low_complexity Low_complexity 1 24 0 316 323 25 44 chr12 85101640 85101798 -58684657 + MER5B DNA MER1_type 1 155 -23 * 325 275 34 107 chr12 85101663 85101841 -58684614 - MER5A DNA MER1_type -23 166 2 758 264 227 16 chr12 85102510 85102941 -58683514 - L1MC4a LINE L1 -1920 5888 5367 350 239 83 0 chr12 85103254 85103363 -58683092 + MER112 DNA MER1_type 39 156 -104 1348 159 0 5 chr12 85103512 85103719 -58682736 + AluJb SINE Alu 1 206 -106 268 383 49 6 chr12 85105078 85105261 -58681194 + L2 LINE L2 2220 2410 -904 943 153 19 0 chr12 85105382 85105539 -58680916 + FRAM SINE Alu 1 160 -6 183 283 0 0 chr12 85105632 85105678 -58680777 + L2 LINE L2 2175 2220 -1094 1932 156 0 37 chr12 85105800 85106121 -58680334 + AluSx SINE Alu 1 309 -3 529 290 100 15 chr12 85106267 85106627 -58679828 - L2 LINE L2 0 3272 2847 * 955 249 296 3 chr12 85106617 85107002 -58679453 - L2 LINE L2 -578 2736 2239 351 347 147 35 chr12 85107012 85107167 -58679288 + L2 LINE L2 2323 2459 -855 1692 202 79 81 chr12 85107167 85107722 -58678733 + MLT2B3 LTR ERVL 1 554 0 351 347 147 35 chr12 85107722 85108143 -58678312 + L2 LINE L2 2459 2964 -350 256 363 33 0 chr12 85108986 85109077 -58677378 + MIR SINE MIR 32 125 -83 762 271 35 10 chr12 85109083 85109282 -58677173 + MIR SINE MIR 16 219 -43 21 82 0 0 chr12 85109514 85109563 -58676892 + AT_rich Low_complexity Low_complexity 1 49 0 2402 94 23 66 chr12 85109798 85110190 -58676265 + THE1C LTR MaLR 1 375 0 10373 124 30 4 chr12 85110190 85111728 -58674727 + THE1C-int LTR MaLR 1 1578 -2 1674 142 54 56 chr12 85111730 85112155 -58674300 + THE1C LTR MaLR 1 428 0 753 279 48 20 chr12 85112326 85112577 -58673878 + MIR SINE MIR 2 259 -3 27 0 0 0 chr12 85113302 85113329 -58673126 + AT_rich Low_complexity Low_complexity 1 27 0 701 240 14 14 chr12 85113341 85113487 -58672968 - FRAM SINE Alu -30 146 1 289 295 54 18 chr12 85113679 85113791 -58672664 + L2 LINE L2 3179 3294 -19 1449 221 0 0 chr12 85114297 85114555 -58671900 + AluJb SINE Alu 1 258 -54 195 69 0 0 chr12 85114558 85114587 -58671868 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 360 0 0 0 chr12 85114835 85114875 -58671580 + (TG)n Simple_repeat Simple_repeat 1 40 0 252 82 0 20 chr12 85114919 85114968 -58671487 - L1MB2 LINE L1 -2 6169 6122 623 164 109 8 chr12 85114968 85115096 -58671359 - FRAM SINE Alu -15 161 21 1971 147 87 10 chr12 85115096 85115510 -58670945 - L1MB2 LINE L1 -43 6128 5683 508 189 55 67 chr12 85116654 85116818 -58669637 - L1MB8 LINE L1 -9 6169 6008 2142 271 116 11 chr12 85116821 85117674 -58668781 + L2 LINE L2 2215 3141 -172 1896 60 30 0 chr12 85118170 85118405 -58668050 + AluY SINE Alu 1 242 -69 257 260 0 0 chr12 85118625 85118675 -58667780 + Charlie4a DNA MER1_type 1 50 -458 943 203 66 4 chr12 85118706 85118948 -58667507 + Charlie4a DNA MER1_type 242 498 -10 2029 92 39 39 chr12 85119031 85119337 -58667118 - AluYa5 SINE Alu -5 306 1 28 48 0 0 chr12 85119609 85119651 -58666804 + AT_rich Low_complexity Low_complexity 1 42 0 2690 80 8 11 chr12 85119997 85120374 -58666081 + L1PA7 LINE L1 5778 6153 -1 627 255 15 70 chr12 85120378 85120543 -58665912 + L1MC5 LINE L1 6931 7077 -884 2654 104 11 8 chr12 85120543 85120917 -58665538 + THE1C LTR MaLR 1 375 0 627 255 15 70 chr12 85120917 85121022 -58665433 + L1MC5 LINE L1 7077 7186 -775 1887 165 12 52 chr12 85121306 85121712 -58664743 - MLT1B LTR MaLR 0 390 1 213 377 88 25 chr12 85122382 85122621 -58663834 - L2 LINE L2 -209 3063 2810 * 287 336 80 0 chr12 85122605 85122730 -58663725 - MIR SINE MIR -98 164 30 297 0 0 0 chr12 85122794 85122827 -58663628 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1370 158 69 89 chr12 85122991 85123294 -58663161 - AluJb SINE Alu -15 297 1 665 279 52 75 chr12 85123748 85124174 -58662281 + MLT1L LTR MaLR 200 615 0 438 286 129 24 chr12 85124333 85124543 -58661912 - MIR SINE MIR -2 260 29 259 359 39 29 chr12 85124752 85124855 -58661600 - MIR SINE MIR -58 150 47 22 35 0 0 chr12 85125104 85125133 -58661322 + AT_rich Low_complexity Low_complexity 1 29 0 705 246 54 65 chr12 85126133 85126393 -58660062 + Charlie1a DNA MER1_type 1 257 -1198 1018 173 18 0 chr12 85126393 85126561 -58659894 + AluJo SINE Alu 120 290 -22 1322 183 130 39 chr12 85126577 85126884 -58659571 + Charlie1a DNA MER1_type 257 603 -2158 2310 87 7 0 chr12 85126884 85127183 -58659272 + AluSx SINE Alu 2 302 -10 1322 183 130 39 chr12 85127183 85127236 -58659219 + Charlie1a DNA MER1_type 603 650 -805 318 153 169 25 chr12 85127235 85127353 -58659102 + Charlie1a DNA MER1_type 1237 1371 -84 * 704 194 57 28 chr12 85127367 85127578 -58658877 + Charlie1a DNA MER1_type 1237 1453 -2 259 291 36 18 chr12 85127601 85127711 -58658744 - MIR SINE MIR -10 252 141 606 302 79 0 chr12 85127726 85127915 -58658540 + L2 LINE L2 2864 3067 -246 518 294 117 36 chr12 85129004 85129252 -58657203 + L2 LINE L2 3011 3278 -35 356 327 9 0 chr12 85129314 85129424 -58657031 - MIR SINE MIR -132 130 20 1755 119 0 8 chr12 85129659 85129911 -58656544 + AluSc SINE Alu 41 290 -19 304 326 42 0 chr12 85129949 85130044 -58656411 + MIR SINE MIR 50 148 -60 2003 153 0 0 chr12 85130410 85130705 -58655750 - AluSx SINE Alu -17 295 1 375 238 10 10 chr12 85130996 85131097 -58655358 + L1ME3 LINE L1 6061 6161 -1 674 175 10 0 chr12 85131202 85131305 -58655150 - 5S rRNA rRNA -10 111 8 2670 83 11 21 chr12 85131409 85131784 -58654671 - THE1C LTR MaLR 0 375 5 292 246 44 61 chr12 85131950 85131988 -58654467 + L1MC/D LINE L1 5489 5526 -644 1873 134 53 3 chr12 85131988 85132271 -58654184 + AluSx SINE Alu 1 297 -15 292 246 44 61 chr12 85132271 85132346 -58654109 + L1MC/D LINE L1 5526 5600 -570 893 248 126 3 chr12 85132451 85132761 -58653694 + L1ME2 LINE L1 5815 6162 -2 319 295 87 44 chr12 85132809 85132992 -58653463 - L3 LINE CR1 -217 1360 1170 15089 118 33 16 chr12 85133633 85135747 -58650708 + Tigger1 DNA MER2_type 3 2081 -337 2116 108 0 0 chr12 85135747 85136024 -58650431 + AluSg SINE Alu 1 277 -33 209 57 29 0 chr12 85136024 85136059 -58650396 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 15089 118 33 16 chr12 85136059 85136320 -58650135 + Tigger1 DNA MER2_type 2080 2418 0 291 317 151 25 chr12 85136435 85136634 -58649821 - L2 LINE L2 -927 2387 2164 25 51 0 0 chr12 85137278 85137317 -58649138 + AT_rich Low_complexity Low_complexity 1 39 0 819 242 65 19 chr12 85138026 85138241 -58648214 + MIR SINE MIR 17 241 -21 889 153 0 0 chr12 85138750 85138887 -58647568 - FLAM_C SINE Alu -6 137 1 227 189 38 0 chr12 85139495 85139548 -58646907 + L2 LINE L2 3258 3312 -1 477 294 27 7 chr12 85140955 85141101 -58645354 - L2 LINE L2 -8 3264 3116 251 272 43 43 chr12 85141165 85141257 -58645198 + MER5B DNA MER1_type 87 178 0 531 234 278 15 chr12 85141538 85141743 -58644712 - MIR SINE MIR 0 262 4 656 239 72 0 chr12 85141785 85141965 -58644490 + L1MC/D LINE L1 5574 5766 -2042 1606 184 59 28 chr12 85142606 85142960 -58643495 - MLT1A1 LTR MaLR 0 365 1 504 264 78 35 chr12 85143150 85143434 -58643021 + HAL1b LINE L1 758 1053 -295 422 61 15 0 chr12 85143769 85143835 -58642620 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 65 0 0 chr12 85143839 85143870 -58642585 + (TC)n Simple_repeat Simple_repeat 1 31 0 1344 222 129 61 chr12 85144453 85144958 -58641497 + MLT1F LTR MaLR 1 539 -3 24 0 0 0 chr12 85145313 85145337 -58641118 + AT_rich Low_complexity Low_complexity 1 24 0 2221 110 3 3 chr12 85145713 85146012 -58640443 + AluSq SINE Alu 1 299 -14 1732 171 10 7 chr12 85149222 85149521 -58636934 - AluJb SINE Alu -10 302 3 2835 128 60 34 chr12 85149901 85150434 -58636021 + L1PA16 LINE L1 5620 6166 0 185 65 32 0 chr12 85150453 85150484 -58635971 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2056 106 7 23 chr12 85151060 85151361 -58635094 + AluSx SINE Alu 1 296 -16 1903 222 75 38 chr12 85152083 85152126 -58634329 - L1ME2 LINE L1 -10 6154 6114 450 0 0 0 chr12 85152126 85152176 -58634279 + (TA)n Simple_repeat Simple_repeat 2 51 0 1903 222 75 38 chr12 85152176 85152812 -58633643 - L1ME2 LINE L1 -50 6114 5450 340 214 155 48 chr12 85153253 85153356 -58633099 + L2 LINE L2 3196 3309 -4 247 359 121 60 chr12 85153838 85154086 -58632369 - L2 LINE L2 -2 3270 3008 567 165 18 9 chr12 85154245 85154354 -58632101 - L1MC/D LINE L1 -488 5754 5645 355 320 169 44 chr12 85154585 85154951 -58631504 - L2 LINE L2 -10 3262 2851 23 0 0 0 chr12 85155354 85155377 -58631078 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 85155465 85155495 -58630960 + AT_rich Low_complexity Low_complexity 1 30 0 1094 181 122 0 chr12 85155633 85155871 -58630584 + Tigger4(Zombi) DNA MER2_type 1 267 -2464 2147 126 11 22 chr12 85155887 85156062 -58630393 + Tigger4(Zombi) DNA MER2_type 2372 2547 -184 2317 102 0 3 chr12 85156062 85156357 -58630098 + AluSg SINE Alu 1 294 -16 2147 126 11 22 chr12 85156357 85156545 -58629910 + Tigger4(Zombi) DNA MER2_type 2547 2731 0 1822 111 0 0 chr12 85156885 85157119 -58629336 + AluSx SINE Alu 61 294 -18 226 252 206 9 chr12 85158318 85158425 -58628030 - MIR SINE MIR -115 147 20 345 339 73 29 chr12 85158734 85158979 -58627476 + L1ME LINE L1 5457 5712 -409 183 156 0 0 chr12 85159014 85159046 -58627409 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 255 122 0 0 chr12 85159480 85159529 -58626926 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 1957 113 0 78 chr12 85159532 85159852 -58626603 - AluSx SINE Alu -17 295 1 23 54 0 0 chr12 85160321 85160358 -58626097 + AT_rich Low_complexity Low_complexity 1 37 0 1731 180 4 0 chr12 85160512 85160790 -58625665 + AluJo SINE Alu 4 282 -30 402 263 80 34 chr12 85161974 85162149 -58624306 + MIR SINE MIR 2 184 -78 2229 96 20 0 chr12 85162347 85162639 -58623816 + AluSc SINE Alu 1 298 -11 243 0 0 0 chr12 85162681 85162708 -58623747 + (TTG)n Simple_repeat Simple_repeat 1 27 0 228 94 0 0 chr12 85162714 85162746 -58623709 - Alu SINE Alu -16 286 255 1009 110 20 0 chr12 85162746 85162892 -58623563 - AluSq/x SINE Alu -163 149 1 22 0 0 0 chr12 85162896 85162918 -58623537 + AT_rich Low_complexity Low_complexity 1 22 0 260 146 0 0 chr12 85163092 85163133 -58623322 + Alu SINE Alu 3 43 -260 1421 124 33 33 chr12 85163605 85163874 -58622581 + AluSx SINE Alu 58 312 0 1804 108 21 4 chr12 85164673 85164952 -58621503 + L1PA15 LINE L1 5867 6150 -15 329 328 81 51 chr12 85165110 85165445 -58621010 + L2 LINE L2 2600 2944 -370 1863 158 10 13 chr12 85165761 85166071 -58620384 + AluJo SINE Alu 2 310 -2 785 204 30 10 chr12 85166315 85166516 -58619939 - L1ME LINE L1 -619 5543 5339 1197 224 79 63 chr12 85166562 85167195 -58619260 - L1ME LINE L1 -1012 5134 4492 1204 175 129 6 chr12 85167236 85167562 -58618893 + Charlie1b DNA MER1_type 116 481 -42 547 197 116 0 chr12 85167613 85167760 -58618695 - L1MD2 LINE L1 -34 6325 6162 279 153 51 17 chr12 85167776 85167835 -58618620 + Charlie1b DNA MER1_type 463 523 0 757 342 59 33 chr12 85169076 85169468 -58616987 - L3 LINE CR1 -929 648 247 247 172 47 16 chr12 85170317 85170381 -58616074 - L1ME4a LINE L1 -101 6020 5955 2480 73 0 0 chr12 85170557 85170858 -58615597 + AluSc SINE Alu 1 301 -8 253 332 75 39 chr12 85171856 85172136 -58614319 + L2 LINE L2 2409 2698 -616 1729 147 32 3 chr12 85172192 85172477 -58613978 + AluSx SINE Alu 1 293 -19 526 125 0 70 chr12 85173368 85173496 -58612959 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 1744 178 9 25 chr12 85173498 85173813 -58612642 - AluJo SINE Alu -2 310 1 1974 120 3 31 chr12 85173987 85174316 -58612139 - AluSq SINE Alu 0 321 1 21 0 0 0 chr12 85174378 85174399 -58612056 + AT_rich Low_complexity Low_complexity 1 21 0 2028 107 46 4 chr12 85174960 85175241 -58611214 + AluSx SINE Alu 1 293 -19 497 283 20 140 chr12 85175259 85175396 -58611059 + L2 LINE L2 2923 3075 -197 2442 85 0 0 chr12 85175396 85175691 -58610764 + AluSg SINE Alu 1 295 -15 497 283 20 140 chr12 85175691 85175903 -58610552 + L2 LINE L2 3075 3230 -42 3199 146 80 28 chr12 85176007 85176628 -58609827 - L1MB7 LINE L1 -20 6164 5498 2273 161 31 17 chr12 85176628 85177050 -58609405 + MSTC LTR MaLR 1 428 0 3199 146 80 28 chr12 85177050 85177152 -58609303 - L1MB7 LINE L1 -686 5498 5403 286 318 64 18 chr12 85177160 85177270 -58609185 + L2 LINE L2 3154 3268 -4 219 330 120 77 chr12 85177627 85177860 -58608595 + L2 LINE L2 3030 3272 0 1511 185 3 41 chr12 85178090 85178418 -58608037 + AluJo SINE Alu 1 317 0 3115 75 19 2 chr12 85178547 85178973 -58607482 + L1PA8 LINE L1 5726 6158 -14 458 265 58 77 chr12 85179052 85179114 -58607341 + L1ME4a LINE L1 5634 5696 -425 2040 117 4 0 chr12 85179114 85179421 -58607034 + AluSx SINE Alu 1 308 0 458 265 58 77 chr12 85179421 85179670 -58606785 + L1ME4a LINE L1 5696 5940 -181 2345 84 0 13 chr12 85179882 85180192 -58606263 + AluSx SINE Alu 1 306 -6 1996 146 0 14 chr12 85180554 85180849 -58605606 - AluJo SINE Alu -20 292 2 313 308 71 19 chr12 85181110 85181321 -58605134 + MARNA DNA Mariner 275 496 -90 192 77 0 0 chr12 85181377 85181403 -58605052 + (TG)n Simple_repeat Simple_repeat 2 27 0 715 164 30 37 chr12 85182048 85182182 -58604273 - FLAM_C SINE Alu 0 133 1 2123 124 0 17 chr12 85182314 85182612 -58603843 - AluSx SINE Alu -19 293 1 21 36 0 0 chr12 85182793 85182821 -58603634 + AT_rich Low_complexity Low_complexity 1 28 0 1531 171 32 14 chr12 85183036 85183316 -58603139 + AluJo SINE Alu 1 285 -27 203 61 30 0 chr12 85183316 85183349 -58603106 + (CA)n Simple_repeat Simple_repeat 2 35 0 254 304 43 22 chr12 85183744 85183836 -58602619 + MIR SINE MIR 7 100 -162 1749 175 21 24 chr12 85185128 85185465 -58600990 - MER1B DNA MER1_type -1 336 1 2190 114 0 10 chr12 85185607 85185905 -58600550 + AluSx SINE Alu 1 295 -17 267 182 0 0 chr12 85186098 85186142 -58600313 - L2 LINE L2 -8 3264 3221 295 370 78 33 chr12 85186473 85186614 -58599841 - L2 LINE L2 -575 2739 2606 2242 98 3 0 chr12 85186614 85186921 -58599534 + AluSp SINE Alu 1 308 0 295 370 78 33 chr12 85186921 85187175 -58599280 - L2 LINE L2 -708 2606 2325 21 57 0 0 chr12 85187200 85187235 -58599220 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr12 85187439 85187475 -58598980 + AT_rich Low_complexity Low_complexity 1 36 0 214 208 0 42 chr12 85191086 85191134 -58595321 + G-rich Low_complexity Low_complexity 3 48 0 382 265 0 0 chr12 85192093 85192176 -58594279 - L2 LINE L2 -4 3268 3186 407 239 77 26 chr12 85192504 85192621 -58593834 - L2 LINE L2 -4 3309 3187 22 56 0 0 chr12 85193146 85193182 -58593273 + AT_rich Low_complexity Low_complexity 1 36 0 665 170 122 27 chr12 85193445 85193592 -58592863 + FRAM SINE Alu 2 162 -4 21 0 0 0 chr12 85193786 85193807 -58592648 + AT_rich Low_complexity Low_complexity 1 21 0 360 153 0 0 chr12 85193835 85193894 -58592561 - AluJo SINE Alu -9 293 235 1164 147 5 26 chr12 85193894 85194084 -58592371 - AluJo SINE Alu -126 186 1 2177 106 3 32 chr12 85194497 85194808 -58591647 + AluSx SINE Alu 1 302 -10 974 219 187 16 chr12 85195233 85195677 -58590778 + MER113 DNA MER1_type? 2 521 0 185 274 20 0 chr12 85196074 85196125 -58590330 + MIR SINE MIR 154 205 -57 574 279 48 24 chr12 85196781 85196989 -58589466 - L2 LINE L2 -2 3311 3099 512 240 33 0 chr12 85197071 85197192 -58589263 - MER69A DNA AcHobo -3 174 50 2280 80 10 7 chr12 85197243 85197542 -58588913 + AluSc SINE Alu 1 300 -9 321 289 114 33 chr12 85197883 85198466 -58587989 + L1MC4 LINE L1 7313 8041 -1 228 342 74 25 chr12 85198507 85198709 -58587746 + MER20 DNA MER1_type 3 214 -5 6996 41 17 2 chr12 85198852 85199511 -58586944 - L1PA6 LINE L1 0 6154 5475 2348 74 0 32 chr12 85199511 85199823 -58586632 - AluY SINE Alu -9 302 1 6996 41 17 2 chr12 85199823 85200387 -58586068 - L1PA6 LINE L1 -679 5475 4921 355 300 318 18 chr12 85200396 85200842 -58585613 + L2 LINE L2 1838 2417 -897 200 239 49 99 chr12 85200914 85201056 -58585399 - L2 LINE L2 -213 3059 2925 249 372 0 11 chr12 85201132 85201226 -58585229 - L2 LINE L2 -456 2858 2766 463 337 17 0 chr12 85201233 85201408 -58585047 + Charlie8 DNA MER1_type 1 178 -2239 204 392 163 0 chr12 85201755 85201908 -58584547 - L2 LINE L2 -688 2626 2449 2363 81 16 0 chr12 85202375 85202682 -58583773 - AluSq SINE Alu -1 312 1 202 211 0 67 chr12 85202992 85203082 -58583373 + T-rich Low_complexity Low_complexity 6 89 0 498 268 7 0 chr12 85203776 85203929 -58582526 + L1ME1 LINE L1 6010 6163 -3 1611 234 106 24 chr12 85204210 85204550 -58581905 + MLT1F LTR MaLR 3 398 -144 2118 63 81 7 chr12 85204550 85204835 -58581620 - AluSx SINE Alu -5 307 2 1611 234 106 24 chr12 85204835 85204993 -58581462 + MLT1F LTR MaLR 398 542 0 180 0 0 0 chr12 85205188 85205208 -58581247 + (T)n Simple_repeat Simple_repeat 1 20 0 391 318 9 29 chr12 85205346 85205699 -58580756 + CT-rich Low_complexity Low_complexity 1 345 0 216 97 0 0 chr12 85205742 85205773 -58580682 + (T)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chr12 85206163 85206195 -58580260 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr12 85206260 85206299 -58580156 + AT_rich Low_complexity Low_complexity 1 39 0 2158 125 0 28 chr12 85206317 85206636 -58579819 - AluSx SINE Alu -2 310 1 868 159 0 80 chr12 85206900 85207076 -58579379 - AluJb SINE Alu -16 296 135 24 32 0 0 chr12 85207393 85207424 -58579031 + AT_rich Low_complexity Low_complexity 1 31 0 5362 161 18 6 chr12 85207591 85208239 -58578216 - L1MA9 LINE L1 -1 6311 5644 1104 206 46 108 chr12 85208239 85208628 -58577827 + MLT1A1 LTR MaLR 1 365 0 5362 161 18 6 chr12 85208628 85209016 -58577439 - L1MA9 LINE L1 -668 5644 5262 30 0 0 0 chr12 85209024 85209054 -58577401 + AT_rich Low_complexity Low_complexity 1 30 0 724 197 0 0 chr12 85209054 85209171 -58577284 - FLAM_C SINE Alu -15 118 2 381 82 0 0 chr12 85209171 85209232 -58577223 - L1 LINE L1 -865 5169 5109 * 2991 161 35 59 chr12 85209226 85210009 -58576446 - L1 LINE L1 -1739 4295 3532 3363 248 69 46 chr12 85210031 85212565 -58573890 - L1 LINE L1 -3808 2226 8 293 265 107 23 chr12 85212590 85212805 -58573650 - L1ME4a LINE L1 -195 5926 5694 1045 186 12 0 chr12 85213010 85213182 -58573273 - AluJb SINE Alu -138 174 1 1658 176 11 4 chr12 85213295 85213568 -58572887 + AluJb SINE Alu 26 300 -12 279 0 0 0 chr12 85213568 85213599 -58572856 + (TA)n Simple_repeat Simple_repeat 1 31 0 187 180 246 0 chr12 85213733 85213794 -58572661 + MIR SINE MIR 137 212 -50 2338 100 0 0 chr12 85214084 85214395 -58572060 - AluY SINE Alu 0 311 1 2335 88 0 0 chr12 85214491 85214787 -58571668 - AluY SINE Alu -15 296 1 1595 197 16 32 chr12 85214866 85215176 -58571279 + AluJo SINE Alu 1 305 -7 217 227 106 30 chr12 85215460 85215526 -58570929 - L2 LINE L2 -1 3312 3242 418 320 37 9 chr12 85215542 85215692 -58570763 - MIR3 SINE MIR -16 192 39 361 376 60 0 chr12 85215919 85216052 -58570403 - L2 LINE L2 -10 3262 3122 2497 65 0 0 chr12 85216668 85216976 -58569479 - AluY SINE Alu -3 308 1 2125 101 0 44 chr12 85217043 85217359 -58569096 - AluSx SINE Alu -10 302 1 386 341 57 8 chr12 85218020 85218143 -58568312 - L2 LINE L2 -8 3264 3136 365 331 150 47 chr12 85218436 85218796 -58567659 + L2 LINE L2 1344 1666 -1648 2164 138 3 0 chr12 85218796 85219107 -58567348 - AluSq SINE Alu -1 312 1 1845 96 114 11 chr12 85219108 85219379 -58567076 - AluSg1 SINE Alu -10 299 1 365 331 150 47 chr12 85219379 85219737 -58566718 + L2 LINE L2 1665 2138 -1176 562 321 136 28 chr12 85219895 85220247 -58566208 + MLT1K LTR MaLR 114 503 -85 458 247 187 13 chr12 85220406 85220556 -58565899 + MER5A DNA MER1_type 14 189 0 355 309 167 11 chr12 85220887 85221246 -58565209 + L2 LINE L2 1793 2207 -1107 279 376 95 16 chr12 85221432 85221674 -58564781 + L2 LINE L2 2192 2452 -862 824 255 36 34 chr12 85221807 85222191 -58564264 - HAL1 LINE L1 -112 2395 2011 1271 252 142 17 chr12 85222395 85222918 -58563537 - HAL1 LINE L1 -585 1922 1335 382 313 159 6 chr12 85222918 85223094 -58563361 - MLT1K LTR MaLR -342 246 44 1306 103 5 0 chr12 85223632 85223835 -58562620 - L1PA8 LINE L1 -1099 5047 4844 7000 61 3 0 chr12 85223835 85224984 -58561471 + L1PA8 LINE L1 5043 6194 0 2348 108 40 6 chr12 85225285 85225637 -58560818 + THE1B LTR MaLR 1 364 0 647 198 50 22 chr12 85225721 85225903 -58560552 - MER53 DNA DNA -2 187 1 369 333 40 13 chr12 85226579 85226729 -58559726 - MIR SINE MIR -38 224 71 22 88 0 0 chr12 85226754 85226811 -58559644 + AT_rich Low_complexity Low_complexity 1 57 0 453 279 88 28 chr12 85226976 85227191 -58559264 + MER112 DNA MER1_type 2 229 -31 226 281 0 0 chr12 85227610 85227667 -58558788 - MER5B DNA MER1_type -3 175 119 276 237 0 0 chr12 85227671 85227730 -58558725 + L1MC4a LINE L1 5584 5642 -2166 310 225 25 0 chr12 85227737 85227817 -58558638 + L1MC4a LINE L1 5756 5837 -1971 299 271 112 51 chr12 85227849 85227982 -58558473 + L1MC4a LINE L1 5952 6075 -1733 2018 146 3 3 chr12 85227982 85228283 -58558172 + AluSx SINE Alu 1 301 -11 299 271 112 51 chr12 85228283 85228444 -58558011 + L1MC4a LINE L1 6075 6264 -1544 2268 106 6 0 chr12 85228546 85228857 -58557598 + AluSp SINE Alu 1 313 0 582 234 161 5 chr12 85229061 85229279 -58557176 + L1MC4 LINE L1 6808 7059 -983 444 150 0 0 chr12 85229283 85229363 -58557092 + (GA)n Simple_repeat Simple_repeat 1 80 0 746 271 101 14 chr12 85229488 85229846 -58556609 + L1MC4 LINE L1 7107 7495 -547 305 233 11 22 chr12 85229830 85229920 -58556535 + L1MC5 LINE L1 7311 7399 -562 * 354 80 0 0 chr12 85230076 85230126 -58556329 + (CTG)n Simple_repeat Simple_repeat 1 50 0 737 233 39 6 chr12 85231044 85231224 -58555231 + MER5A DNA MER1_type 2 187 -2 543 300 53 62 chr12 85233106 85233307 -58553148 - MER102b DNA MER1_type -1087 341 143 1936 130 11 3 chr12 85233307 85233591 -58552864 - AluSx SINE Alu -26 286 1 543 300 53 62 chr12 85233591 85233729 -58552726 - MER102b DNA MER1_type -1285 143 5 503 141 0 0 chr12 85233866 85233937 -58552518 + FLAM SINE Alu 54 124 -19 186 43 0 0 chr12 85234157 85234180 -58552275 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 312 27 0 0 chr12 85234179 85234216 -58552239 + (CA)n Simple_repeat Simple_repeat 1 37 0 271 198 99 0 chr12 85234639 85234720 -58551735 - L1ME3A LINE L1 -2 6168 6080 320 0 0 24 chr12 85235027 85235068 -58551387 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 251 316 41 0 chr12 85235888 85235986 -58550469 - MIR SINE MIR -2 260 159 284 286 34 56 chr12 85236151 85236329 -58550126 - MLT1I LTR MaLR -176 233 60 1105 223 35 53 chr12 85236329 85236705 -58549750 - MLT1A2 LTR MaLR 0 374 6 224 358 44 15 chr12 85236801 85236938 -58549517 - MIR SINE MIR -101 161 21 1298 111 5 48 chr12 85237190 85237398 -58549057 + AluY SINE Alu 103 301 -10 183 245 19 38 chr12 85237416 85237469 -58548986 + L2 LINE L2 3261 3312 -1 314 305 73 12 chr12 85237579 85237743 -58548712 + L1ME LINE L1 5258 5431 -733 1348 36 12 0 chr12 85237783 85237951 -58548504 - L1PA4 LINE L1 -2 6153 5984 2262 55 16 0 chr12 85237951 85238261 -58548194 + L1PA4 LINE L1 5678 5992 -163 254 315 82 54 chr12 85238681 85239071 -58547384 - L2 LINE L2 -668 2646 2246 655 159 53 0 chr12 85240015 85240185 -58546270 + CT-rich Low_complexity Low_complexity 1 179 0 1875 150 10 38 chr12 85240189 85240503 -58545952 - AluJo SINE Alu -7 305 1 676 221 111 16 chr12 85241100 85241290 -58545165 - L2 LINE L2 0 3313 3106 419 272 160 6 chr12 85241299 85241493 -58544962 - L2 LINE L2 -322 2991 2772 950 0 0 9 chr12 85242297 85242408 -58544047 + (AATAG)n Simple_repeat Simple_repeat 3 112 0 257 241 76 0 chr12 85242754 85242833 -58543622 + MER112 DNA MER1_type 18 102 -158 784 142 18 0 chr12 85244147 85244260 -58542195 + FLAM_C SINE Alu 1 115 -18 406 181 9 17 chr12 85244870 85244986 -58541469 + GA-rich Low_complexity Low_complexity 2 116 0 305 174 14 0 chr12 85245339 85245408 -58541047 + CT-rich Low_complexity Low_complexity 3 72 0 271 371 49 30 chr12 85245649 85245913 -58540542 - L2 LINE L2 -129 3143 2875 377 277 50 0 chr12 85246742 85246843 -58539612 - L2 LINE L2 -9 3304 3199 1133 241 0 0 chr12 85246853 85247077 -58539378 + MER58A DNA MER1_type 1 224 0 586 209 231 41 chr12 85247088 85247356 -58539099 - MER5C DNA MER1_type -4 320 2 215 264 30 132 chr12 85247464 85247631 -58538824 - L2 LINE L2 -243 3070 2921 2324 128 72 41 chr12 85247632 85248330 -58538125 + MER51A LTR ERV1 1 640 0 238 278 56 0 chr12 85248338 85248428 -58538027 - MIR SINE MIR -25 237 143 479 310 0 39 chr12 85248472 85248627 -58537828 - MIR SINE MIR -110 152 4 399 253 165 16 chr12 85248867 85249061 -58537394 - MLT1J LTR MaLR 0 511 289 1045 191 22 44 chr12 85249105 85249330 -58537125 + AluJo SINE Alu 1 220 -92 225 115 58 29 chr12 85249374 85249478 -58536977 + (TA)n Simple_repeat Simple_repeat 1 107 0 1031 172 0 0 chr12 85249481 85249638 -58536817 + AluJb SINE Alu 134 290 -22 351 231 74 37 chr12 85249641 85249749 -58536706 - MLT1J LTR MaLR -30 360 249 * 3274 139 70 42 chr12 85249732 85250991 -58535464 - LTR12 LTR ERV1 -26 1440 6 471 214 55 151 chr12 85251010 85251393 -58535062 - MLT1B LTR MaLR -121 346 1 371 269 21 0 chr12 85251527 85251620 -58534835 - MLT1J LTR MaLR -416 95 1 391 283 134 16 chr12 85251807 85251994 -58534461 + MIR SINE MIR 49 257 -5 217 240 20 0 chr12 85252007 85252057 -58534398 + GA-rich Low_complexity Low_complexity 4 54 0 6414 98 2 14 chr12 85252390 85253343 -58533112 - L1PA10 LINE L1 -2 6166 5226 1365 262 87 28 chr12 85253343 85253535 -58532920 + MLT1J LTR MaLR 7 186 -325 2094 133 3 3 chr12 85253535 85253844 -58532611 - AluSx SINE Alu -3 309 1 1365 262 87 28 chr12 85253844 85254120 -58532335 + MLT1J LTR MaLR 186 503 -8 388 204 38 89 chr12 85254828 85254985 -58531470 + Charlie2 DNA MER1_type 102 250 -2612 1084 214 121 25 chr12 85255067 85255506 -58530949 + Charlie2 DNA MER1_type 2380 2860 -2 1347 115 0 0 chr12 85255517 85255699 -58530756 - AluSg/x SINE Alu 0 312 131 1694 316 50 31 chr12 85256954 85257058 -58529397 - MER115 DNA AcHobo -9 684 583 1804 114 9 76 chr12 85257058 85257373 -58529082 - AluSx SINE Alu -14 298 5 1694 316 50 31 chr12 85257373 85257889 -58528566 - MER115 DNA AcHobo -110 583 52 250 305 85 0 chr12 85258112 85258230 -58528225 - MIR SINE MIR -44 218 91 1725 186 3 3 chr12 85258422 85258712 -58527743 + AluJb SINE Alu 1 290 -22 282 116 0 0 chr12 85259095 85259138 -58527317 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1746 157 46 32 chr12 85259173 85259543 -58526912 - THE1C LTR MaLR 0 375 1 9495 116 20 52 chr12 85259543 85259602 -58526853 - THE1C-int LTR MaLR 0 1580 1521 2238 55 0 80 chr12 85259602 85259929 -58526526 + AluY SINE Alu 1 301 -10 9495 116 20 52 chr12 85259929 85260001 -58526454 - THE1C-int LTR MaLR -59 1521 1448 2463 70 0 0 chr12 85260001 85260299 -58526156 + AluY SINE Alu 1 298 -13 9495 116 20 52 chr12 85260299 85261796 -58524659 - THE1C-int LTR MaLR -132 1448 4 1779 158 61 33 chr12 85261801 85262162 -58524293 - THE1C LTR MaLR -4 371 1 1946 165 26 26 chr12 85262162 85262543 -58523912 + MER65A LTR ERV1 65 445 0 528 256 10 49 chr12 85262543 85262746 -58523709 - L1MC5 LINE L1 -776 7185 6991 877 289 93 0 chr12 85262854 85263145 -58523310 - L1MC4 LINE L1 -1029 7013 6696 23 54 0 0 chr12 85263252 85263289 -58523166 + AT_rich Low_complexity Low_complexity 1 37 0 978 163 6 6 chr12 85263764 85263930 -58522525 - AluSg/x SINE Alu -8 302 137 3524 237 66 30 chr12 85264892 85266237 -58520218 - L1M4 LINE L1 -2576 4273 2881 * 7154 217 26 58 chr12 85266225 85266296 -58520159 - L1 LINE L1 -1952 4897 4825 1999 130 67 6 chr12 85266296 85266641 -58519814 - MER47A DNA MER2_type 0 366 1 7154 217 26 58 chr12 85266641 85266856 -58519599 - L1 LINE L1 -2024 4825 4605 2337 164 9 29 chr12 85266856 85267300 -58519155 - L1PB4 LINE L1 -1 6155 5721 7154 217 26 58 chr12 85267300 85267428 -58519027 - L1 LINE L1 -2244 4605 4474 1802 177 3 0 chr12 85267428 85267711 -58518744 - AluJb SINE Alu -28 284 1 7154 217 26 58 chr12 85267711 85268025 -58518430 - L1 LINE L1 -2375 4474 4151 1766 174 3 0 chr12 85268025 85268307 -58518148 - AluJb SINE Alu -27 285 3 7154 217 26 58 chr12 85268307 85270206 -58516249 - L1 LINE L1 -2698 4151 2400 1433 307 87 50 chr12 85270207 85272033 -58514422 - L1PA15-16 LINE L1 -4845 2005 53 558 0 0 0 chr12 85272035 85272097 -58514358 + (TTTCC)n Simple_repeat Simple_repeat 4 65 0 461 97 14 0 chr12 85272086 85272158 -58514297 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 * 523 264 2 13 chr12 85272158 85272321 -58514134 - L1PA15-16 LINE L1 -6679 171 6 187 53 26 26 chr12 85272328 85272366 -58514089 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 727 252 28 33 chr12 85272917 85273131 -58513324 + MLT1I LTR MaLR 6 218 -191 1624 183 103 0 chr12 85273156 85273457 -58512998 - MER58B DNA MER1_type -8 333 2 2228 146 10 45 chr12 85276052 85276456 -58509999 + MLT1B LTR MaLR 1 390 0 3761 139 143 44 chr12 85278161 85278995 -58507460 - L1MA9 LINE L1 -5 6195 5280 9354 252 73 36 chr12 85278995 85279731 -58506724 - L1MA9 LINE L1 -1356 4678 3971 1828 212 17 3 chr12 85279731 85280090 -58506365 - MLT1A1 LTR MaLR 0 365 2 9354 252 73 36 chr12 85280090 85281194 -58505261 - L1MA9 LINE L1 -2063 3971 2910 1356 163 9 4 chr12 85281194 85281427 -58505028 + MER46A DNA MER2_type 2 235 -1 9354 252 73 36 chr12 85281427 85284796 -58501659 - L1MA9 LINE L1 -3124 2910 11 701 292 69 17 chr12 85285589 85285822 -58500633 + MIR SINE MIR 4 248 -14 346 209 231 0 chr12 85287100 85287191 -58499264 - L2 LINE L2 -5 3308 3197 264 366 46 36 chr12 85287629 85287823 -58498632 + MIR SINE MIR 29 224 -38 251 225 42 14 chr12 85288056 85288127 -58498328 - MLT1K LTR MaLR -5 583 511 213 239 0 0 chr12 85288216 85288262 -58498193 + T-rich Low_complexity Low_complexity 4 49 0 201 152 0 0 chr12 85288712 85288745 -58497710 + (TG)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr12 85288963 85289000 -58497455 + (TG)n Simple_repeat Simple_repeat 1 37 0 194 270 0 0 chr12 85291089 85291126 -58495329 - L2 LINE L2 -14 3299 3263 * 618 273 102 14 chr12 85291094 85291310 -58495145 - MIR SINE MIR -13 249 15 201 337 48 0 chr12 85291560 85291643 -58494812 + L2 LINE L2 3227 3313 0 948 239 26 17 chr12 85291756 85291986 -58494469 - MIR SINE MIR 0 262 31 319 153 24 82 chr12 85292204 85292289 -58494166 - MADE1 DNA Mariner 0 80 1 * 1637 206 43 9 chr12 85292289 85292612 -58493843 - MLT1A1 LTR MaLR -31 334 1 942 253 98 26 chr12 85292761 85293149 -58493306 - L1MC4a LINE L1 -1982 5826 5411 1522 136 0 5 chr12 85293269 85293489 -58492966 - AluJb SINE Alu -93 219 1 478 340 36 11 chr12 85293804 85294163 -58492292 - L1MC4a LINE L1 -1314 4832 4465 1096 224 52 0 chr12 85294177 85294427 -58492028 + L1PB4 LINE L1 5892 6154 -2 555 37 37 0 chr12 85294656 85294738 -58491717 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2074 104 3 34 chr12 85296259 85296557 -58489898 + AluSc SINE Alu 3 291 -18 189 0 0 0 chr12 85297157 85297178 -58489277 + (T)n Simple_repeat Simple_repeat 1 21 0 284 313 82 34 chr12 85297338 85297571 -58488884 + MLT1K LTR MaLR 187 430 -158 193 269 29 77 chr12 85298192 85298296 -58488159 + MIR SINE MIR 164 262 0 289 358 100 21 chr12 85298782 85298972 -58487483 - L2 LINE L2 -19 3253 3049 221 347 179 23 chr12 85300940 85301202 -58485253 - L2 LINE L2 -574 2740 2438 10338 34 20 2 chr12 85301382 85303520 -58482935 - L1PA3 LINE L1 -97 6058 3878 17038 48 8 7 chr12 85303736 85306232 -58480223 + L1P3 LINE L1 3115 5612 -542 1236 317 58 40 chr12 85306366 85307165 -58479290 + L2 LINE L2 1278 2090 -1224 342 284 58 58 chr12 85307396 85307604 -58478851 - LTR16A LTR ERVL -229 221 14 484 279 43 0 chr12 85307649 85307789 -58478666 + L2 LINE L2 2199 2344 -970 532 332 100 53 chr12 85307789 85308584 -58477871 + L2 LINE L2 2487 3312 -1 243 238 32 0 chr12 85309358 85309421 -58477034 + MIR SINE MIR 84 148 -114 1364 215 75 17 chr12 85309424 85309773 -58476682 + MLT1A2 LTR MaLR 6 374 0 219 267 17 0 chr12 85309776 85309836 -58476619 + MIR SINE MIR 148 208 -54 892 261 88 8 chr12 85310180 85310429 -58476026 - LTR40a LTR ERVL 0 519 251 1210 176 41 4 chr12 85310440 85310707 -58475748 - Charlie1a DNA MER1_type -456 999 723 1889 229 25 15 chr12 85310761 85311233 -58475222 - Charlie1a DNA MER1_type -978 477 1 1616 176 7 3 chr12 85311335 85311625 -58474830 - MLT1A1 LTR MaLR 0 365 75 404 192 0 0 chr12 85311761 85311839 -58474616 - MLT1A1 LTR MaLR -279 86 9 6022 127 21 5 chr12 85312010 85313019 -58473436 - L1P3 LINE L1 -5436 1025 1 2702 189 68 18 chr12 85313482 85314662 -58471793 + L1PB4 LINE L1 4658 5893 -263 281 302 121 20 chr12 85315087 85315236 -58471219 + L2 LINE L2 2365 2528 -786 1040 189 9 9 chr12 85315570 85315797 -58470658 - L1PB1 LINE L1 0 6151 5925 281 103 0 90 chr12 85315927 85316005 -58470450 + (T)n Simple_repeat Simple_repeat 1 71 0 92 54 0 0 chr12 85316005 85316153 -58470302 + AT_rich Low_complexity Low_complexity 1 148 0 2732 202 52 46 chr12 85316708 85317357 -58469098 - MER82 DNA MER2_type 0 653 1 1961 137 16 0 chr12 85317477 85317784 -58468671 - AluSx SINE Alu 0 312 1 404 345 80 41 chr12 85317922 85318336 -58468119 + L1 LINE L1 4732 5161 -985 2064 127 3 13 chr12 85318337 85318636 -58467819 + AluJb SINE Alu 1 296 -16 184 350 17 0 chr12 85318678 85318738 -58467717 + L2 LINE L2 3199 3259 -13 2208 166 52 5 chr12 85318748 85319169 -58467286 - LTR32 LTR ERVL 0 471 31 1109 297 30 46 chr12 85319307 85319913 -58466542 + L1PA15-16 LINE L1 93 688 -6161 471 320 52 89 chr12 85319946 85320349 -58466106 + L1M2 LINE L1 664 1051 -5798 286 274 51 0 chr12 85320664 85320781 -58465674 - Charlie8 DNA MER1_type -2245 172 50 1452 281 53 36 chr12 85321254 85322051 -58464404 - L2 LINE L2 -2 3311 2508 2434 81 17 3 chr12 85322157 85322419 -58464036 + L1PA8 LINE L1 5776 6049 -123 2287 97 10 0 chr12 85322419 85322727 -58463728 + AluY SINE Alu 1 311 0 2434 81 17 3 chr12 85322727 85322829 -58463626 + L1PA8 LINE L1 6049 6148 -24 302 226 88 0 chr12 85323551 85323653 -58462802 + MIR SINE MIR 126 236 -26 485 328 0 0 chr12 85323905 85324021 -58462434 + L2 LINE L2 3152 3267 -5 2093 94 36 0 chr12 85324150 85324309 -58462146 - AluSp SINE Alu -26 287 112 423 0 0 0 chr12 85324309 85324356 -58462099 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 2093 94 36 0 chr12 85324356 85324473 -58461982 - AluSp SINE Alu -201 112 1 332 269 75 50 chr12 85325318 85325519 -58460936 - L1M4 LINE L1 -1905 4241 4036 618 263 88 15 chr12 85325560 85325765 -58460690 + MIR SINE MIR 13 232 -30 4893 185 32 28 chr12 85325908 85327947 -58458508 + L1MB7 LINE L1 4119 6162 -22 1756 264 108 24 chr12 85328073 85328639 -58457816 + L2 LINE L2 1472 1989 -1325 1628 222 83 74 chr12 85328639 85329287 -58457168 - MLT1E1 LTR MaLR 0 654 1 1756 264 108 24 chr12 85329287 85329312 -58457143 + L2 LINE L2 1989 2010 -1304 2051 93 19 0 chr12 85329312 85329582 -58456873 + AluSq SINE Alu 23 297 -16 1756 264 108 24 chr12 85329582 85329628 -58456827 + L2 LINE L2 2010 2164 -1150 397 254 174 18 chr12 85329813 85330037 -58456418 + LTR33 LTR ERVL 236 494 -27 718 258 77 45 chr12 85330050 85330337 -58456118 + L2 LINE L2 2163 2458 -856 821 200 19 0 chr12 85330341 85330496 -58455959 + FAM SINE Alu 1 158 -17 5361 140 29 36 chr12 85330523 85331036 -58455419 - L1MA4A LINE L1 -5 6298 5783 186 43 0 0 chr12 85331036 85331059 -58455396 + (TG)n Simple_repeat Simple_repeat 2 24 0 5361 140 29 36 chr12 85331059 85331828 -58454627 - L1MA4A LINE L1 -520 5783 5024 1723 277 47 32 chr12 85331844 85332705 -58453750 + L2 LINE L2 2445 3311 -2 500 292 38 5 chr12 85333180 85333389 -58453066 + Charlie8 DNA MER1_type 50 265 -2152 256 228 0 0 chr12 85333421 85333478 -58452977 + Charlie8 DNA MER1_type 1360 1416 -1001 1177 36 0 0 chr12 85334098 85334238 -58452217 + AluY SINE Alu 163 302 -9 325 157 61 15 chr12 85335681 85335756 -58450699 + MER5A DNA MER1_type 21 103 -80 1521 325 59 41 chr12 85335872 85336932 -58449523 + L2 LINE L2 1011 2090 -1224 345 284 59 59 chr12 85337166 85337370 -58449085 - LTR16A LTR ERVL -233 217 14 484 279 43 0 chr12 85337415 85337555 -58448900 + L2 LINE L2 2199 2344 -970 559 328 100 53 chr12 85337555 85338350 -58448105 + L2 LINE L2 2487 3312 -1 555 309 112 54 chr12 85339669 85340223 -58446232 - L2 LINE L2 -4 3309 2727 914 284 84 52 chr12 85340798 85341263 -58445192 + MLT1K LTR MaLR 83 562 -26 3277 128 37 20 chr12 85341509 85342102 -58444353 - L1MA8 LINE L1 -5 6286 5684 267 383 58 24 chr12 85342173 85342468 -58443987 + L2 LINE L2 1334 1638 -1676 311 306 106 0 chr12 85342477 85342637 -58443818 + L2 LINE L2 1805 1981 -1333 639 261 144 0 chr12 85342784 85342979 -58443476 - MIR SINE MIR 0 262 40 669 278 125 22 chr12 85342990 85343518 -58442937 - L1ME3A LINE L1 -3 6161 5561 22 35 0 0 chr12 85345175 85345204 -58441251 + AT_rich Low_complexity Low_complexity 1 29 0 539 192 10 177 chr12 85345400 85345603 -58440852 - MIR SINE MIR -35 227 59 302 202 28 73 chr12 85345624 85345733 -58440722 + MIR SINE MIR 159 262 0 210 250 0 0 chr12 85346118 85346166 -58440289 + A-rich Low_complexity Low_complexity 2 49 0 921 186 28 0 chr12 85347347 85347524 -58438931 - MIR SINE MIR -8 254 73 23 33 0 0 chr12 85347525 85347555 -58438900 + AT_rich Low_complexity Low_complexity 1 30 0 230 286 57 0 chr12 85347558 85347628 -58438827 - L2 LINE L2 -15 3298 3225 203 259 19 0 chr12 85347645 85347699 -58438756 - L2 LINE L2 -232 3081 3027 912 297 110 8 chr12 85347858 85348330 -58438125 + LTR33 LTR ERVL 2 521 0 300 89 0 0 chr12 85348462 85348507 -58437948 - U7 snRNA snRNA -15 48 4 841 229 42 54 chr12 85348917 85349157 -58437298 + MIR SINE MIR 2 238 -24 854 242 38 50 chr12 85349703 85349943 -58436512 + MIR SINE MIR 2 238 -24 639 203 30 8 chr12 85350955 85351088 -58435367 - AluJo SINE Alu -176 136 1 1971 138 10 16 chr12 85351147 85351459 -58434996 + AluJb SINE Alu 3 312 0 1073 144 12 12 chr12 85351861 85352034 -58434421 + AluJb SINE Alu 139 311 -1 495 324 111 19 chr12 85352107 85352323 -58434132 - MIR SINE MIR -1 261 26 323 217 57 9 chr12 85352586 85352681 -58433774 - L1M4 LINE L1 -2090 4056 3954 12159 96 7 1 chr12 85352681 85355207 -58431248 - L1PA7 LINE L1 0 6154 3606 39956 38 25 4 chr12 85355208 85361232 -58425223 - L1PA3 LINE L1 0 6155 5 203 292 162 52 chr12 85362495 85362649 -58423806 + L2 LINE L2 3035 3205 -108 27 0 0 0 chr12 85362653 85362680 -58423775 + AT_rich Low_complexity Low_complexity 1 27 0 227 329 14 0 chr12 85363100 85363170 -58423285 - MIR SINE MIR -99 163 93 1926 128 19 39 chr12 85363838 85364150 -58422305 - AluSx SINE Alu -6 306 1 471 94 0 94 chr12 85364161 85364257 -58422198 - L1MC1 LINE L1 0 6333 6247 1800 168 21 15 chr12 85364267 85364612 -58421843 - MLT1A1 LTR MaLR -12 353 2 2828 111 2 11 chr12 85364614 85365063 -58421392 - L1MC1 LINE L1 -82 6251 5807 2187 108 0 0 chr12 85365182 85365461 -58420994 + AluSx SINE Alu 1 279 -33 945 204 51 44 chr12 85365519 85365793 -58420662 + MER93b LTR ERV1 98 373 0 3422 145 25 8 chr12 85365794 85366621 -58419834 - L1MC/D LINE L1 -522 5811 4977 6901 109 17 21 chr12 85366623 85367169 -58419286 - L1MA2 LINE L1 0 6304 5757 3526 80 2 2 chr12 85367169 85367622 -58418833 + MLT2A2 LTR ERVL 1 453 0 6901 109 17 21 chr12 85367622 85367644 -58418811 - L1MA2 LINE L1 -547 5757 5736 1989 138 48 28 chr12 85367644 85367999 -58418456 + THE1B LTR MaLR 1 362 -2 6901 109 17 21 chr12 85367999 85368948 -58417507 - L1MA2 LINE L1 -568 5736 4787 443 242 102 6 chr12 85368954 85369111 -58417344 + LTR33A LTR ERVL 349 520 -3 811 258 35 72 chr12 85369240 85369585 -58416870 + MER46C DNA MER2_type 1 332 -6 236 154 19 0 chr12 85369693 85369745 -58416710 + (TA)n Simple_repeat Simple_repeat 2 54 0 4231 204 6 1 chr12 85369745 85370684 -58415771 - L1PB1 LINE L1 -1751 4395 3452 * 6030 146 16 1 chr12 85370681 85372396 -58414059 + L1PB1 LINE L1 4416 6151 0 281 302 121 20 chr12 85372730 85372879 -58413576 - L2 LINE L2 -786 2528 2365 1414 177 18 85 chr12 85373590 85373980 -58412475 - MLT1B LTR MaLR 0 390 27 23 78 0 0 chr12 85374271 85374322 -58412133 + AT_rich Low_complexity Low_complexity 1 51 0 226 313 112 30 chr12 85374530 85374664 -58411791 - MIR3 SINE MIR -7 201 57 422 324 93 50 chr12 85374828 85375149 -58411306 - MLT1H LTR MaLR -214 335 1 236 318 182 0 chr12 85375231 85375341 -58411114 + MIR SINE MIR 57 186 -76 693 271 33 4 chr12 85375484 85375757 -58410698 - L1M4 LINE L1 -2579 3567 3287 302 352 40 11 chr12 85375762 85375938 -58410517 - L1MC4 LINE L1 -987 7055 6875 618 110 0 0 chr12 85375938 85376029 -58410426 - MSTA LTR MaLR 0 428 338 1474 229 104 12 chr12 85376679 85377111 -58409344 + LTR33 LTR ERVL 50 521 0 284 185 0 15 chr12 85377324 85377389 -58409066 + CT-rich Low_complexity Low_complexity 1 64 0 180 385 10 31 chr12 85378057 85378153 -58408302 - L2 LINE L2 -211 3061 2968 521 176 121 30 chr12 85378157 85378322 -58408133 + MER96B DNA MER1_type? 238 417 0 28 71 0 0 chr12 85378698 85378754 -58407701 + AT_rich Low_complexity Low_complexity 1 56 0 485 155 0 21 chr12 85379064 85379161 -58407294 + CT-rich Low_complexity Low_complexity 4 98 0 1452 145 26 4 chr12 85379165 85379393 -58407062 - AluJb SINE Alu -59 253 21 205 196 22 0 chr12 85380054 85380100 -58406355 + CT-rich Low_complexity Low_complexity 2 48 0 2912 225 63 28 chr12 85380688 85381334 -58405121 - L1ME1 LINE L1 -18 6148 5526 612 73 0 0 chr12 85381334 85381416 -58405039 + (TG)n Simple_repeat Simple_repeat 2 83 0 2912 225 63 28 chr12 85381416 85381579 -58404876 - L1ME1 LINE L1 -640 5526 5370 2312 113 0 0 chr12 85381579 85381889 -58404566 - AluSx SINE Alu -2 310 1 2912 225 63 28 chr12 85381889 85382242 -58404213 - L1ME1 LINE L1 -796 5370 5031 1755 151 7 24 chr12 85382242 85382533 -58403922 - AluJo SINE Alu -24 288 3 2912 225 63 28 chr12 85382533 85382976 -58403479 - L1ME1 LINE L1 -1135 5031 4488 813 221 102 22 chr12 85382946 85383268 -58403187 - L1M4 LINE L1 -2905 3241 2894 * 214 307 193 40 chr12 85383311 85383461 -58402994 + L2 LINE L2 2918 3090 -182 201 246 0 16 chr12 85383728 85383789 -58402666 + T-rich Low_complexity Low_complexity 5 64 0 2574 68 24 117 chr12 85383810 85384263 -58402192 + L1PA11 LINE L1 5763 6173 -1 3333 130 2 11 chr12 85384341 85384895 -58401560 - MER41B LTR ERV1 -86 549 1 5038 98 5 8 chr12 85384903 85385669 -58400786 - MER41B-int LTR ERV1 -15 5931 5168 861 56 28 7 chr12 85385667 85385809 -58400646 + MER41-int LTR ERV1 3393 3537 -2409 * 2279 214 163 20 chr12 85387395 85388960 -58397495 - L1ME1 LINE L1 -4 6231 4497 1506 241 71 100 chr12 85388958 85389209 -58397246 - L1ME1 LINE L1 -5699 697 440 * 2397 98 13 0 chr12 85389209 85389516 -58396939 - AluSx SINE Alu -1 311 1 1506 241 71 100 chr12 85389516 85389944 -58396511 - L1ME1 LINE L1 -5956 440 38 1252 219 22 19 chr12 85390138 85390453 -58396002 - LTR52 LTR ERVL -105 316 1 2161 233 65 79 chr12 85390455 85391326 -58395129 - LTR52-int LTR ERVL -2 3554 2469 383 234 0 0 chr12 85391329 85391406 -58395049 - LTR52-int LTR ERVL -3140 2545 2469 * 1615 244 71 30 chr12 85391396 85391870 -58394585 - HERVL74 LTR ERVL -837 3090 2248 329 214 21 0 chr12 85391988 85392099 -58394356 - HERVL74 LTR ERVL -1488 2100 1965 * 1099 247 88 61 chr12 85392093 85392487 -58393968 - HERVL74 LTR ERVL -2210 1346 964 207 0 0 0 chr12 85392487 85392510 -58393945 + (TC)n Simple_repeat Simple_repeat 2 24 0 1099 247 88 61 chr12 85392510 85393026 -58393429 - HERVL74 LTR ERVL -2592 964 410 1630 168 55 11 chr12 85393037 85393311 -58393144 + AluJb SINE Alu 1 286 -26 841 164 142 0 chr12 85393352 85393535 -58392920 - HERVL74 LTR ERVL -3281 275 67 205 314 88 62 chr12 85393748 85393942 -58392513 - L2 LINE L2 -214 3058 2860 381 269 29 19 chr12 85394084 85394188 -58392267 - MER91B DNA MER1_type 0 190 86 207 208 125 133 chr12 85394201 85394321 -58392134 - MER91B DNA MER1_type -62 128 10 182 367 0 0 chr12 85394335 85394384 -58392071 - L2 LINE L2 -674 2640 2592 195 100 0 0 chr12 85394402 85394432 -58392023 + (TC)n Simple_repeat Simple_repeat 1 30 0 396 329 84 31 chr12 85394610 85394835 -58391620 - L2 LINE L2 -902 2412 2176 331 321 97 36 chr12 85394996 85395161 -58391294 + MER5A DNA MER1_type 2 176 -13 578 284 64 40 chr12 85396364 85396446 -58390009 + MIR SINE MIR 3 82 -180 2107 124 0 20 chr12 85396446 85396744 -58389711 - AluSx SINE Alu -20 292 1 578 284 64 40 chr12 85396744 85396911 -58389544 + MIR SINE MIR 82 258 -4 338 349 95 52 chr12 85397308 85397804 -58388651 + L2 LINE L2 2340 2856 -458 2397 75 0 0 chr12 85399421 85399703 -58386752 + AluSg SINE Alu 9 290 -20 31 0 0 0 chr12 85399703 85399734 -58386721 + AT_rich Low_complexity Low_complexity 1 31 0 209 272 71 20 chr12 85400343 85400466 -58385989 - MIR SINE MIR -65 143 12 249 237 263 35 chr12 85400774 85400888 -58385567 - MER5B DNA MER1_type -37 141 2 2686 45 0 0 chr12 85401661 85401972 -58384483 + AluY SINE Alu 1 311 0 28276 49 2 3 chr12 85402193 85405916 -58380539 - L1P LINE L1 -2427 3719 1 17074 118 11 27 chr12 85405920 85409810 -58376645 - L1P3 LINE L1 -2533 3928 8 2203 116 0 3 chr12 85409838 85410139 -58376316 - AluSc SINE Alu -9 300 1 353 268 146 29 chr12 85410937 85411176 -58375279 - L1ME4a LINE L1 -171 5950 5684 361 263 0 0 chr12 85411200 85411295 -58375160 - MLT1I LTR MaLR 0 409 315 184 266 117 21 chr12 85411619 85411713 -58374742 - L2 LINE L2 -809 2505 2403 22 0 0 0 chr12 85412364 85412386 -58374069 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 85412522 85412543 -58373912 + AT_rich Low_complexity Low_complexity 1 21 0 3070 160 42 51 chr12 85412621 85413313 -58373142 - L1MB7 LINE L1 -68 6116 5431 1193 333 105 32 chr12 85413313 85414181 -58372274 + L2 LINE L2 1823 2753 -561 6943 176 53 14 chr12 85414182 85416484 -58369971 + L1PB4 LINE L1 3683 6081 -75 2245 86 0 10 chr12 85416484 85416787 -58369668 + AluY SINE Alu 2 301 -10 6943 176 53 14 chr12 85416787 85416867 -58369588 + L1PB4 LINE L1 6081 6156 0 181 373 30 0 chr12 85416898 85416965 -58369490 + L2 LINE L2 2736 2804 -510 628 282 18 0 chr12 85416999 85417169 -58369286 + HERV16 LTR ERVL 484 656 -4340 2126 323 40 26 chr12 85417538 85417774 -58368681 + HERV16 LTR ERVL 1074 1305 -3691 2364 65 0 13 chr12 85417774 85418080 -58368375 - AluY SINE Alu -9 302 1 2126 323 40 26 chr12 85418080 85419226 -58367229 + HERV16 LTR ERVL 1305 2556 -2440 590 290 35 6 chr12 85419226 85419395 -58367060 + MIR SINE MIR 89 262 0 253 298 186 32 chr12 85419513 85419549 -58366906 + L2 LINE L2 3158 3187 -126 1753 147 32 55 chr12 85419549 85419861 -58366594 + AluJo SINE Alu 5 309 -3 253 298 186 32 chr12 85419861 85419948 -58366507 + L2 LINE L2 3187 3300 -13 2455 158 50 2 chr12 85419958 85420394 -58366061 - LTR32 LTR ERVL 0 471 15 194 336 40 81 chr12 85420981 85421130 -58365325 - MIR SINE MIR -117 145 3 374 270 104 40 chr12 85421332 85421543 -58364912 - MIR SINE MIR -6 256 33 818 266 43 23 chr12 85421835 85422091 -58364364 + MIR SINE MIR 2 262 0 193 320 263 6 chr12 85422171 85422327 -58364128 + MIR SINE MIR 54 249 -13 31 0 0 0 chr12 85422632 85422663 -58363792 + AT_rich Low_complexity Low_complexity 1 31 0 2061 126 7 13 chr12 85422673 85422983 -58363472 + AluSx SINE Alu 1 308 -4 2644 208 52 46 chr12 85423103 85423752 -58362703 + MER82 DNA MER2_type 1 653 0 294 338 0 0 chr12 85424056 85424192 -58362263 + C-rich Low_complexity Low_complexity 1 136 0 26 0 0 0 chr12 85425151 85425177 -58361278 + AT_rich Low_complexity Low_complexity 1 26 0 521 178 0 0 chr12 85425627 85425728 -58360727 - L1MA4 LINE L1 -147 6153 6053 630 167 0 21 chr12 85425729 85425873 -58360582 + L1MA4 LINE L1 6159 6299 -1 333 306 15 23 chr12 85427026 85427207 -58359248 - MIR SINE MIR -58 204 26 304 214 155 10 chr12 85427523 85427626 -58358829 + MIR SINE MIR 63 180 -82 232 233 0 50 chr12 85427648 85427708 -58358747 + L2 LINE L2 3182 3238 -34 609 343 95 23 chr12 85427810 85428253 -58358202 + L2 LINE L2 2430 2904 -410 452 302 231 16 chr12 85428733 85429101 -58357354 + L2 LINE L2 2861 3307 -6 210 333 42 42 chr12 85429491 85429587 -58356868 - L2 LINE L2 -39 3233 3138 433 207 24 0 chr12 85429738 85429820 -58356635 + MER5B DNA MER1_type 7 90 -88 2175 105 0 25 chr12 85430206 85430520 -58355935 + AluSp SINE Alu 1 306 -7 352 286 179 0 chr12 85430684 85430796 -58355659 - MIR3 SINE MIR -2 206 75 251 114 0 0 chr12 85432522 85432566 -58353889 - MLT1D LTR MaLR 0 505 462 5555 105 16 27 chr12 85432607 85433505 -58352950 + L1PA15 LINE L1 5274 6161 -4 23 54 0 0 chr12 85433691 85433728 -58352727 + AT_rich Low_complexity Low_complexity 1 37 0 1364 284 139 20 chr12 85433793 85434163 -58352292 - L1MC4a LINE L1 -431 7377 7052 1076 133 0 6 chr12 85434163 85434344 -58352111 + (TA)n Simple_repeat Simple_repeat 1 180 0 1364 284 139 20 chr12 85434344 85434809 -58351646 - L1MC4a LINE L1 -756 7052 6443 293 254 121 61 chr12 85434987 85435152 -58351303 - MLT1I LTR MaLR -228 181 7 235 125 0 18 chr12 85435200 85435256 -58351199 - MER69 DNA AcHobo -99 2427 2373 291 358 100 21 chr12 85437210 85437400 -58349055 + L2 LINE L2 3049 3253 -19 209 260 29 77 chr12 85437886 85437990 -58348465 - MIR SINE MIR 0 262 164 738 311 58 51 chr12 85438428 85438843 -58347612 + LTR16A LTR ERVL 1 418 -32 211 0 0 81 chr12 85440488 85440525 -58345930 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 41587 46 1 1 chr12 85440642 85446794 -58339661 - L1PA4 LINE L1 0 6155 3 433 341 8 53 chr12 85449267 85449513 -58336942 - MIR SINE MIR 0 262 28 790 243 1 2 chr12 85449591 85449762 -58336693 + MER5A DNA MER1_type 10 189 0 21 0 0 0 chr12 85450672 85450693 -58335762 + AT_rich Low_complexity Low_complexity 1 21 0 1597 175 72 3 chr12 85451280 85451572 -58334883 + AluJb SINE Alu 1 312 0 1380 326 89 10 chr12 85452302 85452838 -58333617 + L2 LINE L2 37 529 -2785 2049 148 0 10 chr12 85452838 85452854 -58333601 - AluSx SINE Alu -17 295 280 363 44 0 0 chr12 85452854 85452899 -58333556 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 2049 148 0 10 chr12 85452899 85453180 -58333275 - AluSx SINE Alu -32 280 1 1380 326 89 10 chr12 85453180 85453269 -58333186 + L2 LINE L2 529 610 -2704 1441 195 27 109 chr12 85453269 85453720 -58332735 + MLT2D LTR ERVL 1 414 0 1380 326 89 10 chr12 85453720 85453760 -58332695 + L2 LINE L2 610 750 -2564 684 258 0 6 chr12 85453764 85453931 -58332524 + L2 LINE L2 1786 1951 -1363 361 333 101 0 chr12 85453933 85454092 -58332363 + L2 LINE L2 2527 2701 -613 1094 274 47 79 chr12 85454125 85454617 -58331838 + L2 LINE L2 2838 3313 0 302 361 25 8 chr12 85455208 85455327 -58331128 - MIR SINE MIR -108 154 34 428 243 71 21 chr12 85455888 85456028 -58330427 + MIR SINE MIR 94 240 -22 25 0 0 0 chr12 85457258 85457283 -58329172 + AT_rich Low_complexity Low_complexity 1 25 0 231 250 0 56 chr12 85457291 85457363 -58329092 + L2 LINE L2 3242 3309 -4 981 248 13 13 chr12 85458118 85458352 -58328103 + MIR SINE MIR 3 236 -26 21 0 0 0 chr12 85459454 85459475 -58326980 + AT_rich Low_complexity Low_complexity 1 21 0 371 162 131 0 chr12 85459757 85459856 -58326599 - MER33 DNA MER1_type 0 324 213 * 405 241 25 19 chr12 85459851 85459957 -58326498 - MER33 DNA MER1_type -259 65 1 814 241 47 17 chr12 85460709 85460945 -58325510 + MER46C DNA MER2_type 96 338 0 12994 29 1 1 chr12 85461665 85463988 -58322467 - L1PA3 LINE L1 0 6155 3835 228 100 0 0 chr12 85464120 85464160 -58322295 - MER69 DNA AcHobo -156 2370 2331 17286 98 10 8 chr12 85464189 85464312 -58322143 - L1PA7 LINE L1 -4 6465 6344 2425 81 3 0 chr12 85464312 85464622 -58321833 - AluY SINE Alu 0 311 1 17286 98 10 8 chr12 85464622 85467886 -58318569 - L1PA7 LINE L1 -125 6344 3085 10649 124 44 28 chr12 85467887 85470772 -58315683 - L1PA7 LINE L1 -3495 2966 1 273 290 23 23 chr12 85470845 85470976 -58315479 - LTR16C LTR ERVL -2 489 359 25 0 0 0 chr12 85471515 85471540 -58314915 + AT_rich Low_complexity Low_complexity 1 25 0 290 343 155 20 chr12 85471595 85471892 -58314563 + L2 LINE L2 2404 2740 -574 2200 109 16 0 chr12 85472761 85473064 -58313391 + AluSx SINE Alu 1 308 -4 317 301 10 39 chr12 85473328 85473431 -58313024 + MIR SINE MIR 16 115 -93 2102 131 0 0 chr12 85474841 85475149 -58311306 + AluSg SINE Alu 1 308 0 276 284 49 0 chr12 85475465 85475546 -58310909 - MIR3 SINE MIR -16 192 108 343 256 16 48 chr12 85475870 85475995 -58310460 + LTR67 LTR ERVL 429 549 -8 27 0 0 0 chr12 85476366 85476393 -58310062 + AT_rich Low_complexity Low_complexity 1 27 0 688 271 24 10 chr12 85477312 85477519 -58308936 - MER63A DNA MER1_type 0 210 1 3067 119 8 12 chr12 85478423 85478926 -58307529 + MER4B LTR ERV1 37 537 -73 1181 105 105 0 chr12 85478943 85479114 -58307341 - AluSq SINE Alu -124 189 1 268 160 0 0 chr12 85479114 85479164 -58307291 + MER4D LTR ERV1 854 903 0 26 0 0 0 chr12 85479566 85479592 -58306863 + AT_rich Low_complexity Low_complexity 1 26 0 185 223 0 170 chr12 85479840 85479934 -58306521 + L2 LINE L2 194 271 -3043 1943 176 65 8 chr12 85481128 85481525 -58304930 - MSTB LTR MaLR 0 426 7 2407 80 0 13 chr12 85482183 85482495 -58303960 - AluSx SINE Alu -4 308 1 293 46 0 11 chr12 85482661 85482712 -58303743 - MLT2C2 LTR ERVL -2 462 426 1048 196 67 12 chr12 85483017 85483418 -58303037 - MLT1D LTR MaLR 0 505 21 339 323 31 55 chr12 85483739 85483866 -58302589 + MER5A DNA MER1_type 64 187 -2 710 278 121 12 chr12 85484721 85484969 -58301486 + L1MEd LINE L1 499 773 -5346 1741 148 44 37 chr12 85486433 85486731 -58299724 - AluJb SINE Alu -12 300 1 2255 94 0 10 chr12 85487128 85487427 -58299028 - AluSp SINE Alu -17 296 1 27 62 0 0 chr12 85489940 85489988 -58296467 + AT_rich Low_complexity Low_complexity 1 48 0 274 280 198 19 chr12 85490378 85490535 -58295920 - MIR3 SINE MIR -11 197 13 22 56 0 0 chr12 85491309 85491345 -58295110 + AT_rich Low_complexity Low_complexity 1 36 0 3759 134 30 21 chr12 85492846 85493474 -58292981 - MER41B LTR ERV1 0 635 2 384 325 56 25 chr12 85494096 85494293 -58292162 - LTR16C LTR ERVL -13 478 276 2176 103 7 3 chr12 85495089 85495389 -58291066 - AluSq SINE Alu -12 301 1 442 286 93 0 chr12 85495400 85495540 -58290915 - MIR SINE MIR -21 241 89 696 165 8 8 chr12 85495960 85496081 -58290374 + FLAM_A SINE Alu 5 125 -8 666 249 72 41 chr12 85496513 85496734 -58289721 - MIR SINE MIR -32 230 3 1020 38 0 8 chr12 85496752 85496883 -58289572 + L1PA4 LINE L1 6026 6155 0 182 254 164 0 chr12 85497283 85497338 -58289117 - MIR SINE MIR -106 102 39 1283 99 12 0 chr12 85498707 85498879 -58287576 - AluSg/x SINE Alu -2 310 137 2087 126 0 0 chr12 85499031 85499317 -58287138 - AluSx SINE Alu -11 301 16 1978 146 3 0 chr12 85500161 85500448 -58286007 - AluSx SINE Alu -24 288 1 197 238 48 76 chr12 85500590 85500695 -58285760 + L2 LINE L2 3209 3310 -3 * 487 244 90 60 chr12 85500675 85500876 -58285579 - L2 LINE L2 0 3313 3107 1944 138 10 17 chr12 85501258 85501555 -58284900 - AluSx SINE Alu -12 300 6 5357 97 22 17 chr12 85502897 85503232 -58283223 - L1PB1 LINE L1 0 6151 5819 230 138 35 92 chr12 85503232 85503319 -58283136 + LTR66 LTR ERVL 383 464 -146 5357 97 22 17 chr12 85503319 85503852 -58282603 - L1PB1 LINE L1 -332 5819 5224 27 0 0 0 chr12 85504237 85504264 -58282191 + AT_rich Low_complexity Low_complexity 1 27 0 323 267 34 55 chr12 85504714 85504860 -58281595 - MER45C DNA AcHobo -101 852 710 923 207 77 14 chr12 85504958 85505166 -58281289 - MER45C DNA AcHobo -690 263 43 469 319 26 39 chr12 85505240 85505469 -58280986 - L2 LINE L2 -251 3062 2837 4515 175 3 6 chr12 85505583 85506447 -58280008 - L1 LINE L1 -743 5403 4542 766 220 50 6 chr12 85506813 85506972 -58279483 - FRAM SINE Alu 0 166 1 224 269 226 0 chr12 85507033 85507126 -58279329 - L2 LINE L2 0 3272 3159 13238 130 22 4 chr12 85507431 85509482 -58276973 - Tigger1 DNA MER2_type -329 2089 1 435 290 207 0 chr12 85510524 85510669 -58275786 + MER5A DNA MER1_type 9 183 -6 270 308 75 19 chr12 85511552 85511659 -58274796 + MIR SINE MIR 13 125 -137 423 0 0 0 chr12 85511670 85511717 -58274738 + (TG)n Simple_repeat Simple_repeat 2 48 0 406 322 86 27 chr12 85512910 85513115 -58273340 - MIR SINE MIR -41 221 6 1500 162 38 29 chr12 85513544 85513890 -58272565 + L1MA8 LINE L1 5922 6270 -21 23 33 0 0 chr12 85513902 85513932 -58272523 + AT_rich Low_complexity Low_complexity 1 30 0 30 69 0 0 chr12 85513955 85514013 -58272442 + AT_rich Low_complexity Low_complexity 1 58 0 29 21 0 21 chr12 85514145 85514180 -58272275 + AT_rich Low_complexity Low_complexity 1 36 -10 3424 72 41 0 chr12 85514180 85514639 -58271816 - L1PA8 LINE L1 -8 6164 5687 29 21 0 21 chr12 85514639 85514650 -58271805 + AT_rich Low_complexity Low_complexity 36 46 0 184 354 73 0 chr12 85514841 85514923 -58271532 + L2 LINE L2 3155 3242 -30 203 61 30 0 chr12 85515034 85515067 -58271388 + (TA)n Simple_repeat Simple_repeat 1 34 0 1588 203 14 0 chr12 85515524 85515810 -58270645 - AluJo SINE Alu -22 290 1 191 337 75 78 chr12 85516527 85516782 -58269673 - L2 LINE L2 -645 2669 2416 564 263 103 53 chr12 85516911 85517154 -58269301 + MIR SINE MIR 8 262 0 210 217 22 0 chr12 85517571 85517617 -58268838 + (TA)n Simple_repeat Simple_repeat 1 47 0 2093 30 0 27 chr12 85517705 85517967 -58268488 + L1PA5 LINE L1 5894 6148 -6 254 350 8 17 chr12 85519211 85519331 -58267124 - L2 LINE L2 -1155 2159 2041 262 277 36 43 chr12 85520535 85520781 -58265674 - L1ME LINE L1 -359 5811 5492 3686 278 15 28 chr12 85521372 85521837 -58264618 - MER4D LTR ERV1 0 903 454 1870 102 84 4 chr12 85521837 85522112 -58264343 + AluSc SINE Alu 1 297 -12 3686 278 15 28 chr12 85522112 85522561 -58263894 - MER4D LTR ERV1 -449 454 1 474 390 6 6 chr12 85522664 85522836 -58263619 + MER91A DNA MER1_type 1 172 -24 269 266 31 0 chr12 85522845 85522909 -58263546 + MER91A DNA MER1_type 90 155 -41 757 91 0 0 chr12 85523352 85523451 -58263004 - AluY SINE Alu -174 137 39 699 106 0 0 chr12 85523586 85523680 -58262775 + L1P LINE L1 5 98 -6048 * 13164 81 6 0 chr12 85523678 85525451 -58261004 + L1P LINE L1 623 2406 -3740 605 189 8 33 chr12 85525555 85525677 -58260778 + Tigger1 DNA MER2_type 2299 2417 -1 391 240 16 41 chr12 85525925 85526046 -58260409 + MIR SINE MIR 145 262 0 195 333 126 9 chr12 85526379 85526490 -58259965 - L2 LINE L2 -2 3270 3147 23 78 0 0 chr12 85526627 85526678 -58259777 + AT_rich Low_complexity Low_complexity 1 51 0 100 95 0 0 chr12 85526721 85527017 -58259438 + AT_rich Low_complexity Low_complexity 1 296 0 40 49 0 0 chr12 85527074 85527135 -58259320 + AT_rich Low_complexity Low_complexity 1 61 0 1866 149 3 7 chr12 85528850 85529165 -58257290 + AluSx SINE Alu 5 318 0 213 154 0 0 chr12 85529378 85529417 -58257038 + CT-rich Low_complexity Low_complexity 2 40 0 25 31 0 0 chr12 85529479 85529511 -58256944 + AT_rich Low_complexity Low_complexity 1 32 0 24584 41 42 2 chr12 85531426 85534529 -58251926 - L1P LINE L1 -2913 3233 8 521 68 0 14 chr12 85535415 85535489 -58250966 + L1P3 LINE L1 5734 5806 -348 204 40 0 0 chr12 85536129 85536154 -58250301 + (GA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr12 85536496 85536521 -58249934 + AT_rich Low_complexity Low_complexity 1 25 0 1930 160 20 22 chr12 85536985 85537386 -58249069 - L1MB8 LINE L1 -5 6173 5774 1626 180 10 86 chr12 85537424 85537841 -58248614 + L1M4 LINE L1 5361 5745 -439 1034 265 4 0 chr12 85538588 85538826 -58247629 - MIR SINE MIR -21 241 3 23 0 0 0 chr12 85542346 85542369 -58244086 + AT_rich Low_complexity Low_complexity 1 23 0 188 304 14 14 chr12 85543040 85543109 -58243346 - MIR3 SINE MIR -6 202 134 15238 131 13 33 chr12 85543882 85547455 -58239000 - L1P3 LINE L1 -2882 3579 7 290 258 0 0 chr12 85547459 85547535 -58238920 - MER5A DNA MER1_type -110 79 4 4581 144 30 9 chr12 85548263 85549063 -58237392 - LTR49-int LTR ERV1 -674 5657 4841 510 121 0 0 chr12 85549082 85549165 -58237290 - AluSp/q SINE Alu 0 313 231 310 283 20 30 chr12 85549316 85549415 -58237040 + MIR3 SINE MIR 85 182 -26 1974 139 3 16 chr12 85550197 85550500 -58235955 - AluSg SINE Alu -11 299 1 241 286 129 0 chr12 85551946 85552016 -58234439 - L2 LINE L2 -47 3266 3188 355 354 38 19 chr12 85552336 85552545 -58233910 + MIR SINE MIR 21 233 -29 255 125 0 0 chr12 85552589 85552629 -58233826 + (TTTCC)n Simple_repeat Simple_repeat 2 41 0 569 192 32 8 chr12 85552654 85552779 -58233676 - FLAM_A SINE Alu -5 128 1 181 304 185 0 chr12 85552782 85552874 -58233581 - MIR SINE MIR -108 154 46 417 238 71 8 chr12 85553078 85553204 -58233251 + MIR SINE MIR 123 256 -6 256 257 53 71 chr12 85553391 85553504 -58232951 + MIR SINE MIR 120 230 -32 2298 109 0 10 chr12 85553748 85554059 -58232396 + AluSx SINE Alu 1 308 -4 356 217 0 43 chr12 85554811 85554903 -58231552 - MER94 DNA DNA -33 101 14 3912 224 18 2 chr12 85555301 85556261 -58230194 - L1 LINE L1 -884 5262 4288 1454 85 0 27 chr12 85556310 85556534 -58229921 + L1MA1 LINE L1 6085 6302 0 257 170 0 0 chr12 85556963 85557016 -58229439 - L1ME4a LINE L1 -9 6112 6060 1323 278 82 32 chr12 85557379 85557657 -58228798 - HAL1 LINE L1 0 2507 2244 414 0 0 0 chr12 85557657 85557703 -58228752 + (CA)n Simple_repeat Simple_repeat 2 47 0 1323 278 82 32 chr12 85557703 85558146 -58228309 - HAL1 LINE L1 -263 2244 1750 320 286 20 10 chr12 85558140 85558238 -58228217 - HAL1 LINE L1 -1639 868 770 * 1062 272 66 43 chr12 85558408 85559154 -58227301 - HAL1 LINE L1 -1012 1495 636 1155 266 43 40 chr12 85559183 85559582 -58226873 + L2 LINE L2 2904 3303 -10 34 24 0 0 chr12 85559837 85559878 -58226577 + AT_rich Low_complexity Low_complexity 1 41 0 237 329 75 20 chr12 85560526 85560662 -58225793 - MIR3 SINE MIR -48 160 17 403 101 87 0 chr12 85560662 85560731 -58225724 + MER5C DNA MER1_type 2 76 -248 180 111 0 0 chr12 85561009 85561036 -58225419 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 210 111 44 0 chr12 85562195 85562240 -58224215 + T-rich Low_complexity Low_complexity 2 48 0 183 129 0 0 chr12 85562857 85562888 -58223567 + (T)n Simple_repeat Simple_repeat 1 31 0 564 238 49 7 chr12 85563149 85563292 -58223163 - MER104 DNA Tc2 -16 164 16 211 242 11 11 chr12 85564060 85564155 -58222300 + CT-rich Low_complexity Low_complexity 1 95 0 266 49 0 24 chr12 85564350 85564391 -58222064 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 235 25 206 chr12 85564531 85564769 -58221686 - L2 LINE L2 -125 3147 2953 315 272 58 10 chr12 85564916 85565019 -58221436 - MER94 DNA DNA -26 108 1 258 164 66 0 chr12 85565061 85565122 -58221333 + MER116 DNA Mariner 13 77 -3 187 195 8 57 chr12 85565314 85565437 -58221018 + G-rich Low_complexity Low_complexity 3 119 0 663 237 57 26 chr12 85565561 85565800 -58220655 - MER58A DNA MER1_type 0 224 3 386 334 35 69 chr12 85565801 85566223 -58220232 + L1MEd LINE L1 373 780 -5339 251 256 12 49 chr12 85567318 85567400 -58219055 + L2 LINE L2 3190 3268 -4 195 296 74 12 chr12 85568659 85568740 -58217715 - MIR3 SINE MIR -49 159 74 274 221 58 0 chr12 85569018 85569104 -58217351 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 297 292 130 16 chr12 85570016 85570201 -58216254 - MIR SINE MIR -1 261 56 225 125 16 156 chr12 85570506 85570570 -58215885 - L2 LINE L2 0 3313 3259 215 250 43 0 chr12 85570781 85570873 -58215582 + (GGGTG)n Simple_repeat Simple_repeat 4 99 0 13120 110 0 3 chr12 85570899 85573641 -58212814 + L1PA8 LINE L1 3427 6171 -1 249 261 31 15 chr12 85573677 85573742 -58212713 + MER5A DNA MER1_type 124 189 0 220 303 9 64 chr12 85574326 85574435 -58212020 - L2 LINE L2 -1034 2280 2178 273 264 58 66 chr12 85574476 85574597 -58211858 - L2 LINE L2 -9 3263 3144 589 245 75 0 chr12 85575612 85575771 -58210684 - MIR SINE MIR 0 262 92 4571 201 4 4 chr12 85575810 85576750 -58209705 + L1P LINE L1 3658 4597 -1549 275 116 0 0 chr12 85576742 85576785 -58209670 + L1 LINE L1 4685 4727 -1419 * 207 0 0 0 chr12 85577131 85577154 -58209301 + (TG)n Simple_repeat Simple_repeat 1 23 0 186 392 48 8 chr12 85577350 85577475 -58208980 - L2 LINE L2 -925 2389 2260 216 67 0 0 chr12 85577702 85577732 -58208723 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr12 85577821 85577845 -58208610 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr12 85579028 85579049 -58207406 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr12 85580692 85580743 -58205712 + AT_rich Low_complexity Low_complexity 1 51 0 183 320 0 0 chr12 85580937 85580987 -58205468 + L2 LINE L2 3264 3313 0 23 0 0 0 chr12 85581862 85581885 -58204570 + AT_rich Low_complexity Low_complexity 1 23 0 185 146 21 0 chr12 85583481 85583529 -58202926 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 241 284 80 44 chr12 85583634 85583859 -58202596 + L2 LINE L2 2175 2407 -907 23 0 0 0 chr12 85584299 85584322 -58202133 + AT_rich Low_complexity Low_complexity 1 23 0 226 297 45 18 chr12 85584429 85584540 -58201915 - L1MC4 LINE L1 -1315 6727 6614 * 249 188 125 0 chr12 85584472 85584552 -58201903 + L1MC4 LINE L1 6614 6703 -1339 216 386 76 0 chr12 85584915 85585060 -58201395 - MIR SINE MIR -87 175 20 668 259 27 11 chr12 85585212 85585397 -58201058 - MIR SINE MIR -3 259 72 1236 94 2 2 chr12 85585439 85585717 -58200738 + (TCC)n Simple_repeat Simple_repeat 1 459 0 905 190 12 0 chr12 85585717 85585880 -58200575 - FRAM SINE Alu -12 164 1 40 59 0 0 chr12 85586294 85586362 -58200093 + AT_rich Low_complexity Low_complexity 1 68 0 27 0 0 0 chr12 85586703 85586730 -58199725 + AT_rich Low_complexity Low_complexity 1 27 0 2007 138 0 0 chr12 85586809 85587122 -58199333 + AluSx SINE Alu 1 313 0 356 333 62 0 chr12 85587133 85587262 -58199193 + L2 LINE L2 3167 3303 -10 314 322 98 38 chr12 85587736 85587919 -58198536 - MIR SINE MIR -50 212 19 610 277 103 0 chr12 85588232 85588427 -58198028 - MIR SINE MIR 0 262 48 239 136 106 30 chr12 85588879 85588945 -58197510 + L1PB4 LINE L1 6084 6154 -2 25 0 0 0 chr12 85589808 85589833 -58196622 + AT_rich Low_complexity Low_complexity 1 25 0 323 288 127 88 chr12 85590186 85590526 -58195929 - L2 LINE L2 -5 3267 2915 182 313 0 21 chr12 85590541 85590589 -58195866 - L2 LINE L2 -208 3064 3018 21 36 0 0 chr12 85591012 85591040 -58195415 + AT_rich Low_complexity Low_complexity 1 28 0 1250 99 6 0 chr12 85591316 85591477 -58194978 - AluSp SINE Alu -150 163 2 5725 154 37 20 chr12 85591477 85592602 -58193853 - LTR49-int LTR ERV1 -1477 4854 3711 1458 201 0 41 chr12 85594000 85594294 -58192161 + AluJb SINE Alu 6 287 -25 2364 94 0 25 chr12 85594348 85594667 -58191788 - AluSx SINE Alu -1 311 1 581 170 74 0 chr12 85594924 85595059 -58191396 + L1MA7 LINE L1 6142 6285 -6 500 298 65 7 chr12 85595347 85595527 -58190928 + MIR SINE MIR 8 206 -56 24 96 0 0 chr12 85595932 85596005 -58190450 + AT_rich Low_complexity Low_complexity 1 73 0 194 360 0 40 chr12 85596372 85596497 -58189958 + L2 LINE L2 2567 2686 -628 2219 103 0 3 chr12 85596533 85596823 -58189632 - AluSx SINE Alu -23 289 1 296 339 54 23 chr12 85597240 85597370 -58189085 - L2 LINE L2 0 3313 3180 599 296 5 16 chr12 85597486 85597672 -58188783 + MIR SINE MIR 7 190 -72 264 333 25 62 chr12 85597726 85597966 -58188489 - L2 LINE L2 -215 3057 2827 1583 245 41 83 chr12 85599043 85599308 -58187147 - L1MC3 LINE L1 -1394 6391 6116 2406 68 0 0 chr12 85599308 85599601 -58186854 - AluY SINE Alu -18 293 1 1583 245 41 83 chr12 85599601 85599672 -58186783 - L1MC3 LINE L1 -1669 6116 6044 1824 149 54 35 chr12 85599672 85600040 -58186415 - THE1C LTR MaLR 0 375 1 1583 245 41 83 chr12 85600040 85600412 -58186043 - L1MC3 LINE L1 -1741 6044 5712 38 68 0 0 chr12 85600434 85600507 -58185948 + AT_rich Low_complexity Low_complexity 1 73 0 308 256 23 0 chr12 85601319 85601405 -58185050 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 437 334 22 0 chr12 85601967 85602142 -58184313 - MIR SINE MIR -49 213 34 26 0 0 0 chr12 85602442 85602468 -58183987 + AT_rich Low_complexity Low_complexity 1 26 0 6510 52 12 70 chr12 85602916 85604636 -58181819 - SVA Other Other -763 1386 1 279 0 0 0 chr12 85604636 85604667 -58181788 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 208 69 0 0 chr12 85605522 85605551 -58180904 + (TTTTTG)n Simple_repeat Simple_repeat 2 180 0 2160 122 0 0 chr12 85605551 85605863 -58180592 - AluSx SINE Alu 0 341 1 1003 312 42 51 chr12 85605925 85606475 -58179980 - L2 LINE L2 0 3313 2759 198 71 0 0 chr12 85607566 85607594 -58178861 + (TG)n Simple_repeat Simple_repeat 1 28 0 3462 148 40 13 chr12 85608358 85609032 -58177423 - L1MA4 LINE L1 -3 6297 5606 1312 229 111 36 chr12 85609066 85609534 -58176921 - Charlie4a DNA MER1_type -4 504 2 21 36 0 0 chr12 85609628 85609656 -58176799 + AT_rich Low_complexity Low_complexity 1 28 0 899 293 84 42 chr12 85610466 85610916 -58175539 - MLT1J LTR MaLR -42 469 1 368 392 51 31 chr12 85611397 85611652 -58174803 - L2 LINE L2 -4 3268 3009 2274 188 61 55 chr12 85611827 85612517 -58173938 + L1MDa LINE L1 1638 2331 -4209 222 165 38 0 chr12 85612540 85612619 -58173836 + (TA)n Simple_repeat Simple_repeat 1 82 0 9777 18 5 0 chr12 85612919 85614834 -58171621 - L1PA2 LINE L1 0 6155 4233 23589 43 0 0 chr12 85614934 85618650 -58167805 + L1PA5 LINE L1 2398 6147 -7 302 283 79 13 chr12 85618759 85618911 -58167544 - HAL1b LINE L1 -621 727 566 193 57 57 0 chr12 85619123 85619158 -58167297 + (TA)n Simple_repeat Simple_repeat 2 38 0 240 325 47 47 chr12 85619161 85619438 -58167017 - HAL1b LINE L1 -831 517 241 198 0 0 0 chr12 85620612 85620634 -58165821 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 236 248 60 45 chr12 85620719 85620852 -58165603 + L1ME4a LINE L1 5713 5847 -274 231 36 0 0 chr12 85620917 85620945 -58165510 + (TA)n Simple_repeat Simple_repeat 2 29 0 329 250 61 15 chr12 85620945 85621077 -58165378 + L1ME4a LINE L1 5959 6096 -25 189 107 0 0 chr12 85621078 85621106 -58165349 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 335 281 22 0 chr12 85621891 85621980 -58164475 + L1MC4 LINE L1 6614 6704 -1338 1561 179 47 7 chr12 85621984 85622263 -58164192 - AluJb SINE Alu -21 291 2 189 338 59 15 chr12 85622469 85622537 -58163918 + MIR SINE MIR 12 82 -180 1359 216 19 84 chr12 85622885 85623426 -58163029 - MLT1E1 LTR MaLR 0 654 4 24 32 0 0 chr12 85624106 85624137 -58162318 + AT_rich Low_complexity Low_complexity 1 31 0 2622 39 0 0 chr12 85624481 85624788 -58161667 - AluY SINE Alu -4 307 1 1652 171 19 39 chr12 85625476 85625786 -58160669 - AluJb SINE Alu -8 304 1 29 0 0 0 chr12 85626323 85626352 -58160103 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 85626554 85626582 -58159873 + AT_rich Low_complexity Low_complexity 1 28 0 1861 136 7 0 chr12 85626681 85626953 -58159502 - AluSx SINE Alu -14 298 25 1982 109 0 0 chr12 85627164 85627467 -58158988 + AluSc SINE Alu 23 325 0 276 299 141 11 chr12 85627683 85627860 -58158595 - MIR SINE MIR -61 201 2 962 211 152 78 chr12 85628046 85628407 -58158048 - MLT1B LTR MaLR -2 388 1 245 289 67 67 chr12 85628819 85628954 -58157501 - MIR SINE MIR -19 243 109 714 306 95 21 chr12 85629337 85629664 -58156791 - L2 LINE L2 -20 3293 2943 847 237 7 72 chr12 85629861 85630015 -58156440 - L2 LINE L2 -1171 2143 2015 361 0 0 0 chr12 85630015 85630059 -58156396 + L1PA3 LINE L1 6109 6152 -3 847 237 7 72 chr12 85630059 85630195 -58156260 - L2 LINE L2 -1299 2015 1872 214 318 138 0 chr12 85630316 85630444 -58156011 - MIR SINE MIR -63 145 4 199 319 59 34 chr12 85632510 85632629 -58153826 - MIR3 SINE MIR -5 203 82 21 0 0 0 chr12 85632896 85632917 -58153538 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr12 85633570 85633621 -58152834 + AT_rich Low_complexity Low_complexity 1 51 0 359 206 37 37 chr12 85633800 85633907 -58152548 - L2 LINE L2 -8 3305 3199 285 274 44 18 chr12 85634033 85634146 -58152309 + L1MC4a LINE L1 4900 5015 -1131 1141 280 86 35 chr12 85634367 85635032 -58151423 + L1MC4a LINE L1 5254 5952 -1856 36 23 0 0 chr12 85635190 85635233 -58151222 + AT_rich Low_complexity Low_complexity 1 43 0 214 254 28 56 chr12 85635302 85635373 -58151082 - L2 LINE L2 -199 3073 3005 244 257 57 0 chr12 85635373 85635443 -58151012 + L1PA8A LINE L1 5923 5996 -135 379 353 160 5 chr12 85635536 85635930 -58150525 - L2 LINE L2 -635 2679 2225 6516 53 3 3 chr12 85636096 85637485 -58148970 - L1PA7 LINE L1 0 6154 4744 637 333 58 34 chr12 85637492 85637857 -58148598 + L2 LINE L2 2643 3011 -302 304 312 54 11 chr12 85637879 85637972 -58148483 + L2 LINE L2 3158 3254 -18 268 289 96 39 chr12 85638062 85638218 -58148237 - L2 LINE L2 -962 2352 2188 * 520 279 34 20 chr12 85638212 85638359 -58148096 - MIR SINE MIR -26 236 88 5473 169 22 5 chr12 85638753 85640240 -58146215 - L1MA8 LINE L1 0 6291 4777 1945 88 0 46 chr12 85640246 85640530 -58145925 - AluSc SINE Alu 0 309 39 305 297 9 34 chr12 85641602 85641736 -58144719 - L1MC/D LINE L1 -526 5644 5539 311 302 69 44 chr12 85642681 85642921 -58143534 + MIR SINE MIR 5 250 -12 1951 185 35 31 chr12 85642943 85643398 -58143057 + MSTB2 LTR MaLR 1 457 0 1639 178 26 3 chr12 85644175 85644478 -58141977 - AluJo SINE Alu -2 310 1 265 246 72 0 chr12 85648978 85649047 -58137408 + MIR SINE MIR 185 258 -4 599 195 18 6 chr12 85649167 85649336 -58137119 + CT-rich Low_complexity Low_complexity 2 172 0 1962 100 4 4 chr12 85649337 85649608 -58136847 - AluSc SINE Alu -38 271 1 23 0 0 0 chr12 85649662 85649685 -58136770 + AT_rich Low_complexity Low_complexity 1 23 0 755 152 73 0 chr12 85649685 85649849 -58136606 - L1MA8 LINE L1 -3 6288 6113 591 320 140 20 chr12 85650286 85650686 -58135769 - L2 LINE L2 -1022 2292 1845 4258 193 61 29 chr12 85651720 85651886 -58134569 + Charlie1 DNA MER1_type 1687 1846 -915 1964 118 55 0 chr12 85651886 85652175 -58134280 - AluSx SINE Alu -6 306 2 4258 193 61 29 chr12 85652175 85653048 -58133407 + Charlie1 DNA MER1_type 1846 2759 -2 957 95 29 0 chr12 85653273 85653410 -58133045 - AluSg/x SINE Alu 0 312 172 21 0 0 0 chr12 85654423 85654444 -58132011 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 85654931 85654959 -58131496 + AT_rich Low_complexity Low_complexity 1 28 0 1103 111 6 6 chr12 85655185 85655357 -58131098 - L1MA6 LINE L1 -2 6298 6127 1699 155 3 30 chr12 85655352 85655648 -58130807 + L1MA7 LINE L1 5802 6089 -202 220 205 0 0 chr12 85656336 85656375 -58130080 + (CA)n Simple_repeat Simple_repeat 1 39 0 448 287 66 0 chr12 85656525 85656661 -58129794 - MIR SINE MIR -111 151 7 21 36 0 0 chr12 85658983 85659011 -58127444 + AT_rich Low_complexity Low_complexity 1 28 0 185 300 0 17 chr12 85659814 85659874 -58126581 + L2 LINE L2 3255 3313 0 22 0 0 0 chr12 85660626 85660648 -58125807 + AT_rich Low_complexity Low_complexity 1 22 0 455 279 44 7 chr12 85661282 85661418 -58125037 + MIR SINE MIR 84 224 -38 940 56 0 0 chr12 85661932 85662058 -58124397 + L1PA4 LINE L1 6030 6155 0 23 0 0 0 chr12 85662058 85662081 -58124374 + AT_rich Low_complexity Low_complexity 1 23 0 1543 226 46 25 chr12 85662267 85662635 -58123820 - MER70A LTR ERVL -59 413 38 484 280 104 11 chr12 85663359 85663541 -58122914 + MIR SINE MIR 63 261 -1 459 0 0 0 chr12 85663567 85663618 -58122837 + (CA)n Simple_repeat Simple_repeat 2 52 0 1835 172 7 0 chr12 85663836 85664127 -58122328 + AluSx SINE Alu 1 293 -19 1607 258 57 28 chr12 85664451 85665232 -58121223 - L2 LINE L2 -10 3303 2510 270 210 25 37 chr12 85665254 85665335 -58121120 - MER116 DNA Mariner 0 80 1 255 319 32 0 chr12 85665335 85665429 -58121026 - L2 LINE L2 -890 2424 2328 214 217 67 142 chr12 85665442 85665562 -58120893 - L2 LINE L2 -1473 1841 1731 180 381 48 0 chr12 85665733 85665838 -58120617 - L2 LINE L2 -86 3186 3077 346 289 16 41 chr12 85665895 85666016 -58120439 - MIR SINE MIR -93 169 52 197 174 0 65 chr12 85666684 85666730 -58119725 + L2 LINE L2 3221 3263 -9 24 32 0 0 chr12 85667461 85667492 -58118963 + AT_rich Low_complexity Low_complexity 1 31 0 2625 55 0 0 chr12 85668150 85668458 -58117997 + AluY SINE Alu 1 308 -3 1566 191 0 7 chr12 85668507 85668789 -58117666 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr12 85668792 85668826 -58117629 + (CAA)n Simple_repeat Simple_repeat 2 35 0 383 214 12 24 chr12 85669766 85669850 -58116605 - AluJ/FLAM SINE Alu -218 84 2 392 336 163 23 chr12 85670241 85670674 -58115781 - L2 LINE L2 -1 3271 2778 304 259 188 0 chr12 85670730 85670842 -58115613 - MIR SINE MIR -5 257 125 2014 218 70 7 chr12 85671166 85671708 -58114747 + L1M4 LINE L1 4198 4773 -1373 2159 124 3 0 chr12 85671804 85672110 -58114345 - AluSx SINE Alu -5 307 1 1352 188 9 143 chr12 85672139 85672587 -58113868 + MLT1D LTR MaLR 1 388 -117 557 256 107 47 chr12 85672797 85673012 -58113443 + MIR SINE MIR 5 232 -30 304 308 29 10 chr12 85673426 85673530 -58112925 - L2 LINE L2 -7 3306 3201 2663 282 148 15 chr12 85673600 85674895 -58111560 - L2 LINE L2 -4 3309 1839 286 250 71 12 chr12 85674898 85674982 -58111473 - L2 LINE L2 -1857 1457 1369 204 260 0 0 chr12 85675234 85675284 -58111171 + MIR SINE MIR 2 51 -211 652 304 57 10 chr12 85675390 85675584 -58110871 + MIR SINE MIR 12 214 -48 26 30 0 0 chr12 85675744 85675777 -58110678 + AT_rich Low_complexity Low_complexity 1 33 0 251 330 90 10 chr12 85678492 85678592 -58107863 - L2 LINE L2 -230 3042 2935 198 306 157 9 chr12 85678776 85678884 -58107571 + MER5A DNA MER1_type 54 177 -12 225 0 0 0 chr12 85679511 85679536 -58106919 + (T)n Simple_repeat Simple_repeat 1 25 0 303 323 115 0 chr12 85679750 85679880 -58106575 - MIR SINE MIR -14 248 104 294 261 241 26 chr12 85680122 85680317 -58106138 + MIR SINE MIR 20 256 -6 295 333 62 0 chr12 85680352 85680448 -58106007 - L2 LINE L2 -4 3309 3208 21 36 0 0 chr12 85681149 85681177 -58105278 + AT_rich Low_complexity Low_complexity 1 28 0 314 314 160 48 chr12 85682885 85683091 -58103364 - L2 LINE L2 -1 3271 3020 1883 96 37 0 chr12 85683091 85683385 -58103070 - AluY SINE Alu 0 304 1 314 314 160 48 chr12 85683385 85683470 -58102985 - L2 LINE L2 -252 3020 2946 1169 148 44 10 chr12 85683473 85683676 -58102779 + MER2 DNA MER2_type 1 210 -135 288 152 0 0 chr12 85683682 85683748 -58102707 + T-rich Low_complexity Low_complexity 1 66 0 770 138 4 169 chr12 85683773 85684004 -58102451 - 7SK RNA RNA 0 193 1 355 173 0 86 chr12 85684006 85684087 -58102368 + MER2 DNA MER2_type 272 345 0 1037 105 0 0 chr12 85684596 85684729 -58101726 + AluSg/x SINE Alu 125 257 -55 23 0 0 0 chr12 85685077 85685100 -58101355 + AT_rich Low_complexity Low_complexity 1 23 0 484 117 29 35 chr12 85685201 85685372 -58101083 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 314 68 95 0 chr12 85685378 85685452 -58101003 + (TA)n Simple_repeat Simple_repeat 1 81 0 1891 131 10 37 chr12 85685452 85685749 -58100706 - AluSx SINE Alu -23 289 1 1527 191 15 4 chr12 85736034 85736306 -58050149 + AluJo SINE Alu 3 277 -35 2061 122 10 0 chr12 85736306 85736599 -58049856 + AluSq SINE Alu 16 313 0 2165 118 3 7 chr12 85736871 85737168 -58049287 - AluSx SINE Alu -15 297 2 207 321 0 0 chr12 85737253 85737306 -58049149 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 2483 112 11 16 chr12 85737895 85738270 -58048185 - THE1C LTR MaLR 0 375 3 2165 31 0 0 chr12 85738799 85739059 -58047396 - L1PA4 LINE L1 -1 6154 5895 2390 73 0 10 chr12 85739107 85739421 -58047034 - AluY SINE Alu 0 311 1 182 125 42 83 chr12 85741498 85741546 -58044909 - L2 LINE L2 0 3272 3227 1781 193 3 0 chr12 85742082 85742382 -58044073 + AluJb SINE Alu 1 301 -11 638 282 117 11 chr12 85742632 85742905 -58043550 + L1MC/D LINE L1 5487 5788 -2020 401 239 31 31 chr12 85742976 85743096 -58043359 - MER94 DNA DNA -4 130 8 1628 204 31 11 chr12 85743096 85743454 -58043001 + MLT1A1 LTR MaLR 1 365 0 312 123 35 0 chr12 85743544 85743601 -58042854 + Alu SINE Alu 244 302 0 180 344 0 0 chr12 85743929 85743993 -58042462 - L2 LINE L2 -2 3311 3248 375 316 70 57 chr12 85744137 85744365 -58042090 + L3 LINE CR1 1270 1500 -77 2457 235 25 23 chr12 85744370 85744974 -58041481 - MLT1E3 LTR MaLR 0 624 20 21 36 0 0 chr12 85745708 85745736 -58040719 + AT_rich Low_complexity Low_complexity 1 28 0 1726 282 40 6 chr12 85745771 85746267 -58040188 + L2 LINE L2 2226 2738 -576 293 297 127 8 chr12 85746314 85746432 -58040023 + L2 LINE L2 2874 3005 -308 4003 17 0 2 chr12 85746461 85746925 -58039530 - L1PA2 LINE L1 0 6155 5693 3422 8 0 0 chr12 85746925 85747313 -58039142 + L1PA2 LINE L1 5293 5680 -475 529 274 75 36 chr12 85747333 85747433 -58039022 + L2 LINE L2 3045 3140 -173 1542 212 42 3 chr12 85747433 85747763 -58038692 - MER2 DNA MER2_type 0 344 2 529 274 75 36 chr12 85747763 85747914 -58038541 + L2 LINE L2 3140 3306 -7 25 65 0 0 chr12 85747950 85747996 -58038459 + AT_rich Low_complexity Low_complexity 1 46 0 247 330 78 0 chr12 85748163 85748266 -58038189 + L2 LINE L2 3142 3252 -20 258 276 92 11 chr12 85750322 85750409 -58036046 + L2 LINE L2 3169 3262 -10 806 311 171 57 chr12 85750444 85751114 -58035341 + L2 LINE L2 1963 2783 -530 2528 62 3 3 chr12 85751114 85751420 -58035035 + AluY SINE Alu 1 306 -5 806 311 171 57 chr12 85751420 85751744 -58034711 + L2 LINE L2 2783 3069 -244 1817 174 0 10 chr12 85751849 85752147 -58034308 - AluJb SINE Alu -7 305 11 235 333 15 0 chr12 85752161 85752227 -58034228 + L2 LINE L2 3246 3312 -1 1996 141 0 3 chr12 85753464 85753755 -58032700 + AluSx SINE Alu 9 298 -14 23 0 0 0 chr12 85754019 85754042 -58032413 + AT_rich Low_complexity Low_complexity 1 23 0 601 365 114 9 chr12 85755209 85755743 -58030712 + L2 LINE L2 2229 2818 -496 2112 43 0 0 chr12 85756294 85756548 -58029907 - L1PA3 LINE L1 -1 6154 5901 228 282 56 0 chr12 85757622 85757693 -58028762 - MIR SINE MIR -3 259 185 789 193 66 22 chr12 85758428 85758609 -58027846 - MER5A DNA MER1_type 0 189 1 23 54 0 0 chr12 85760404 85760441 -58026014 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr12 85760577 85760603 -58025852 + AT_rich Low_complexity Low_complexity 1 26 0 1258 270 66 65 chr12 85761694 85762218 -58024237 + L2 LINE L2 2787 3308 -5 314 157 0 0 chr12 85762293 85762344 -58024111 + L2 LINE L2 3263 3313 0 1238 213 52 63 chr12 85763234 85763601 -58022854 - MLT1A1 LTR MaLR -2 363 1 483 221 52 22 chr12 85764373 85764509 -58021946 - Charlie4 DNA MER1_type -1 1960 1821 187 281 35 0 chr12 85764850 85764907 -58021548 - MIR SINE MIR -129 133 75 31 26 0 0 chr12 85765779 85765817 -58020638 + AT_rich Low_complexity Low_complexity 1 38 0 596 278 141 0 chr12 85766059 85766286 -58020169 + MIR SINE MIR 2 260 -2 205 216 0 0 chr12 85766322 85766359 -58020096 + (TA)n Simple_repeat Simple_repeat 2 38 0 656 345 125 9 chr12 85766923 85767370 -58019085 - L2 LINE L2 -885 2429 1931 301 303 84 17 chr12 85767919 85768097 -58018358 - MIR SINE MIR -4 258 69 363 141 0 0 chr12 85768281 85768345 -58018110 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 286 280 19 28 chr12 85768345 85768452 -58018003 - L2 LINE L2 -1 3312 3207 56 29 0 0 chr12 85769394 85769464 -58016991 + AT_rich Low_complexity Low_complexity 1 70 0 255 214 139 0 chr12 85769501 85769575 -58016880 + MIR SINE MIR 26 113 -95 21 57 0 0 chr12 85770015 85770050 -58016405 + AT_rich Low_complexity Low_complexity 1 35 0 204 355 74 26 chr12 85770787 85770976 -58015479 - MIR SINE MIR -44 218 21 21 0 0 0 chr12 85771099 85771120 -58015335 + AT_rich Low_complexity Low_complexity 1 21 0 2542 193 25 49 chr12 85773127 85773758 -58012697 + L1MD2 LINE L1 5258 5873 -486 683 274 70 21 chr12 85773834 85774119 -58012336 + L1MD2 LINE L1 6030 6328 -31 347 191 0 0 chr12 85774120 85774183 -58012272 + Alu SINE Alu 236 298 -4 31 26 0 0 chr12 85774402 85774440 -58012015 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr12 85775719 85775752 -58010703 + AT_rich Low_complexity Low_complexity 1 33 0 348 274 92 13 chr12 85776127 85776280 -58010175 + L1M4 LINE L1 3172 3336 -2810 478 161 0 0 chr12 85776283 85776364 -58010091 + FLAM_C SINE Alu 23 103 -40 1332 179 39 27 chr12 85776391 85776670 -58009785 + AluJb SINE Alu 23 304 0 305 354 53 0 chr12 85776894 85777007 -58009448 + L2 LINE L2 3153 3271 -1 189 74 0 0 chr12 85777490 85777517 -58008938 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 239 286 167 0 chr12 85778907 85778991 -58007464 + L2 LINE L2 3208 3305 -8 25 31 0 0 chr12 85779347 85779379 -58007076 + AT_rich Low_complexity Low_complexity 1 32 0 574 202 8 32 chr12 85779463 85779587 -58006868 + FLAM_A SINE Alu 2 122 -11 22 0 0 0 chr12 85779896 85779918 -58006537 + AT_rich Low_complexity Low_complexity 1 22 0 1631 169 11 0 chr12 85780759 85781074 -58005381 - AluSx SINE Alu 0 321 4 22 0 0 0 chr12 85781708 85781730 -58004725 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr12 85782168 85782198 -58004257 + AT_rich Low_complexity Low_complexity 1 30 0 991 265 64 57 chr12 85783098 85783939 -58002516 + L1MEc LINE L1 1916 2726 -3489 4575 259 80 28 chr12 85783946 85784235 -58002220 + L1MEc LINE L1 3174 3447 -2768 724 93 0 28 chr12 85784235 85784330 -58002125 + L1PA10 LINE L1 6061 6154 -14 2273 67 3 7 chr12 85784330 85784627 -58001828 - AluY SINE Alu -15 296 1 724 93 0 28 chr12 85784627 85784638 -58001817 + L1PA10 LINE L1 6154 6164 -4 4575 259 80 28 chr12 85784638 85786397 -58000058 + L1MEc LINE L1 3447 5328 -887 1962 121 18 0 chr12 85786397 85786669 -57999786 + AluSg SINE Alu 1 277 -33 5668 72 5 3 chr12 85786669 85788040 -57998415 + L1PA7 LINE L1 4572 5946 -208 591 235 38 55 chr12 85788467 85788650 -57997805 + MIR SINE MIR 71 250 -12 207 69 0 0 chr12 85789374 85789403 -57997052 + (CA)n Simple_repeat Simple_repeat 2 30 0 2468 47 0 0 chr12 85789977 85790274 -57996181 + AluY SINE Alu 1 297 -14 2314 88 0 0 chr12 85792137 85792431 -57994024 + AluY SINE Alu 1 294 -17 359 345 35 0 chr12 85793087 85793229 -57993226 - MIR SINE MIR -28 234 88 293 318 60 36 chr12 85795343 85795485 -57990970 + MIR SINE MIR 2 151 -61 21 57 0 0 chr12 85795512 85795547 -57990908 + AT_rich Low_complexity Low_complexity 1 35 0 214 175 0 25 chr12 85795553 85795593 -57990862 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr12 85795681 85795718 -57990737 + AT_rich Low_complexity Low_complexity 1 37 0 303 349 191 0 chr12 85798400 85798615 -57987840 + MIR SINE MIR 7 262 0 209 186 14 29 chr12 85800047 85800117 -57986338 + (TTA)n Simple_repeat Simple_repeat 2 70 0 1781 102 80 7 chr12 85800346 85800621 -57985834 + AluSx SINE Alu 2 296 -16 186 375 115 0 chr12 85800635 85800731 -57985724 + L2 LINE L2 3154 3260 -12 570 344 12 24 chr12 85801899 85802146 -57984309 + MIR SINE MIR 11 254 -8 221 346 68 43 chr12 85802132 85802294 -57984161 - MIR3 SINE MIR -11 197 32 * 29 0 0 0 chr12 85802362 85802391 -57984064 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 85802500 85802523 -57983932 + AT_rich Low_complexity Low_complexity 1 23 0 327 347 0 11 chr12 85806342 85806437 -57980018 + MER5A DNA MER1_type 71 164 -25 361 44 0 0 chr12 85806757 85806802 -57979653 - MADE1 DNA Mariner -1 79 35 441 0 0 0 chr12 85806955 85807004 -57979451 + (TA)n Simple_repeat Simple_repeat 1 49 0 254 247 118 21 chr12 85807196 85807289 -57979166 + MER5A DNA MER1_type 87 188 -1 224 351 63 0 chr12 85807296 85807407 -57979048 + L2 LINE L2 3154 3271 -1 23 33 0 0 chr12 85807579 85807609 -57978846 + AT_rich Low_complexity Low_complexity 1 30 0 2854 100 24 20 chr12 85808216 85808675 -57977780 + L1MA3 LINE L1 5842 6302 -3 213 39 0 0 chr12 85809041 85809067 -57977388 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1547 145 14 65 chr12 85809067 85809223 -57977232 - AluJo SINE Alu -26 286 123 180 0 0 0 chr12 85809223 85809243 -57977212 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1872 138 0 7 chr12 85809243 85809526 -57976929 - AluSx SINE Alu -31 281 1 1547 145 14 65 chr12 85809526 85809658 -57976797 - AluJo SINE Alu -187 125 12 23 54 0 0 chr12 85809692 85809729 -57976726 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 85810059 85810083 -57976372 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr12 85810263 85810299 -57976156 + AT_rich Low_complexity Low_complexity 1 36 0 2153 119 0 3 chr12 85810346 85810639 -57975816 - AluSx SINE Alu -20 292 1 417 281 169 36 chr12 85811440 85811794 -57974661 + L2 LINE L2 2750 3313 0 2798 186 87 92 chr12 85811947 85812417 -57974038 - L1MD1 LINE L1 0 6636 6165 2024 125 7 0 chr12 85812417 85812778 -57973677 - AluSx SINE Alu 0 363 1 2798 186 87 92 chr12 85812778 85813347 -57973108 - L1MD1 LINE L1 -471 6165 5435 2222 101 0 0 chr12 85813347 85813654 -57972801 - AluY SINE Alu -4 307 1 2798 186 87 92 chr12 85813654 85813823 -57972632 - L1MD1 LINE L1 -1201 5435 5267 2223 249 55 37 chr12 85815991 85816739 -57969716 - L1MD1 LINE L1 -1888 4652 3892 1089 209 126 32 chr12 85816886 85817379 -57969076 + L1M4 LINE L1 2922 3460 -2686 1591 155 14 152 chr12 85817442 85817856 -57968599 - MLT1A1 LTR MaLR -8 357 1 1839 261 94 65 chr12 85817856 85818403 -57968052 - L1MD1 LINE L1 -5548 992 268 964 49 0 0 chr12 85818403 85818525 -57967930 - L1PA2 LINE L1 -1 6154 6033 1839 261 94 65 chr12 85818525 85818783 -57967672 - L1MD1 LINE L1 -6272 268 19 287 378 39 6 chr12 85818930 85819086 -57967369 - MIR3 SINE MIR -6 202 42 21 36 0 0 chr12 85820415 85820443 -57966012 + AT_rich Low_complexity Low_complexity 1 28 0 2261 89 3 0 chr12 85820506 85820798 -57965657 + AluSx SINE Alu 1 293 -19 558 200 0 0 chr12 85820957 85821057 -57965398 - AluJ/FLAM SINE Alu -212 100 1 1255 267 139 18 chr12 85821571 85822251 -57964204 - L1ME3 LINE L1 0 6162 5349 3868 200 115 16 chr12 85822251 85823236 -57963219 - Tigger6a DNA MER2_type 0 1083 2 1255 267 139 18 chr12 85823236 85823344 -57963111 - L1ME3 LINE L1 -813 5349 5255 195 100 0 0 chr12 85823344 85823374 -57963081 + (T)n Simple_repeat Simple_repeat 1 30 0 1861 5 5 0 chr12 85823382 85823597 -57962858 - L1PA3 LINE L1 -204 5951 5736 1504 12 0 0 chr12 85823597 85823766 -57962689 + L1PA3 LINE L1 5980 6151 -4 216 210 59 59 chr12 85823990 85824109 -57962346 + MIR SINE MIR 61 179 -83 2235 107 0 0 chr12 85824145 85824445 -57962010 + AluSx SINE Alu 1 300 -12 223 342 0 25 chr12 85825078 85825157 -57961298 - MIR SINE MIR -168 94 18 33 66 0 0 chr12 85825422 85825483 -57960972 + AT_rich Low_complexity Low_complexity 1 61 0 905 101 17 0 chr12 85825549 85825668 -57960787 + BC200 scRNA scRNA 1 121 -79 195 100 0 0 chr12 85825669 85825699 -57960756 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1267 179 40 4 chr12 85828294 85828568 -57957887 + L1MB4 LINE L1 5896 6179 -1 933 314 96 11 chr12 85829142 85829847 -57956608 + L2 LINE L2 2204 3274 -39 341 183 0 85 chr12 85829939 85830021 -57956434 + MER116 DNA Mariner 1 75 -5 29 47 0 0 chr12 85831395 85831438 -57955017 + AT_rich Low_complexity Low_complexity 1 43 0 482 293 18 105 chr12 85831471 85831700 -57954755 - MIR SINE MIR -14 248 40 364 242 107 0 chr12 85832095 85832273 -57954182 - Charlie7 DNA MER1_type 0 2612 2416 * 1024 234 73 40 chr12 85832264 85832636 -57953819 - Charlie7 DNA MER1_type -1889 723 340 617 236 14 29 chr12 85832719 85832859 -57953596 + MER45A DNA AcHobo 1 138 -40 288 259 27 18 chr12 85832942 85833054 -57953401 - Charlie7 DNA MER1_type -2443 169 57 368 376 78 0 chr12 85833367 85833585 -57952870 + MIR SINE MIR 13 247 -15 2126 87 4 0 chr12 85833936 85834212 -57952243 + AluSx SINE Alu 3 279 -33 213 65 0 0 chr12 85834216 85834247 -57952208 + (CAA)n Simple_repeat Simple_repeat 2 32 0 234 313 132 28 chr12 85834420 85834564 -57951891 - MIR SINE MIR -52 210 52 456 276 52 0 chr12 85835084 85835200 -57951255 - L2 LINE L2 -10 3303 3182 289 261 70 35 chr12 85835236 85835351 -57951104 + MARNA DNA Mariner 373 491 -95 * 322 232 84 32 chr12 85835262 85835357 -57951098 - MARNA DNA Mariner -399 187 88 229 141 24 59 chr12 85837937 85838022 -57948433 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 199 352 211 0 chr12 85838531 85838659 -57947796 - MER5A DNA MER1_type -3 186 32 220 242 88 44 chr12 85839531 85839622 -57946833 + MIR SINE MIR 122 216 -46 218 383 112 5 chr12 85840146 85840342 -57946113 - MIR SINE MIR -42 220 4 25 0 0 0 chr12 85840587 85840612 -57945843 + AT_rich Low_complexity Low_complexity 1 25 0 281 167 0 17 chr12 85840713 85840773 -57945682 + (TATG)n Simple_repeat Simple_repeat 2 60 0 256 284 11 11 chr12 85840811 85840899 -57945556 + A-rich Low_complexity Low_complexity 2 89 0 335 325 91 20 chr12 85840931 85841128 -57945327 - MIR SINE MIR -32 230 20 28 29 0 0 chr12 85841377 85841412 -57945043 + AT_rich Low_complexity Low_complexity 1 35 0 449 254 58 14 chr12 85841412 85841550 -57944905 + MIR SINE MIR 32 175 -87 2210 214 37 45 chr12 85841613 85842230 -57944225 - LTR9 LTR ERV1 0 612 1 356 277 70 19 chr12 85842889 85843145 -57943310 + L1M4 LINE L1 2676 2944 -3202 330 236 171 8 chr12 85844160 85844283 -57942172 + MIR SINE MIR 47 189 -73 21 0 0 0 chr12 85844364 85844385 -57942070 + AT_rich Low_complexity Low_complexity 1 21 0 218 329 143 14 chr12 85844406 85844546 -57941909 + MER5A DNA MER1_type 32 189 0 393 167 0 0 chr12 85845526 85845604 -57940851 + (TA)n Simple_repeat Simple_repeat 1 78 0 32 57 0 0 chr12 85845922 85845975 -57940480 + AT_rich Low_complexity Low_complexity 1 53 0 530 235 95 72 chr12 85846512 85846733 -57939722 + MIR SINE MIR 1 226 -36 673 313 72 4 chr12 85847293 85847555 -57938900 + LTR16B LTR ERVL 185 464 0 396 0 0 0 chr12 85847807 85847851 -57938604 + (CA)n Simple_repeat Simple_repeat 1 44 0 394 348 56 28 chr12 85847945 85848267 -57938188 + L1MC4a LINE L1 5560 5890 -1918 34 42 0 0 chr12 85849149 85849197 -57937258 + AT_rich Low_complexity Low_complexity 1 48 0 304 123 62 46 chr12 85851727 85851792 -57934663 - L1PA14 LINE L1 -4 6157 6092 778 167 157 50 chr12 85851821 85852019 -57934436 + MER20 DNA MER1_type 1 219 0 209 260 0 0 chr12 85852022 85852072 -57934383 - MIR SINE MIR -101 161 112 281 329 161 7 chr12 85852150 85852299 -57934156 + MIR SINE MIR 35 206 -56 21 71 0 0 chr12 85852299 85852341 -57934114 + AT_rich Low_complexity Low_complexity 1 42 0 1359 162 36 0 chr12 85854240 85854462 -57931993 + MER30 DNA MER1_type 1 230 0 203 352 42 47 chr12 85855665 85855858 -57930597 + MIR SINE MIR 1 192 -70 403 296 31 58 chr12 85855917 85856143 -57930312 - MIR SINE MIR -30 232 13 645 164 0 0 chr12 85856515 85856637 -57929818 - L1MA7 LINE L1 -11 6280 6159 333 0 0 0 chr12 85856792 85856829 -57929626 + (TAA)n Simple_repeat Simple_repeat 3 39 0 336 143 0 0 chr12 85856829 85856885 -57929570 + (GGA)n Simple_repeat Simple_repeat 3 58 0 944 271 71 63 chr12 85858070 85858342 -57928113 - L2 LINE L2 -8 3305 3037 998 192 53 151 chr12 85858342 85858599 -57927856 - MLT1B LTR MaLR 0 390 110 198 0 0 0 chr12 85858599 85858621 -57927834 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 222 37 0 0 chr12 85858620 85858647 -57927808 + (GA)n Simple_repeat Simple_repeat 2 28 0 998 192 53 151 chr12 85858621 85858821 -57927634 - MLT1B LTR MaLR -280 110 1 944 271 71 63 chr12 85858821 85859298 -57927157 - L2 LINE L2 -276 3037 2545 522 293 97 40 chr12 85859300 85859847 -57926608 - L1MC5 LINE L1 -60 7901 7324 428 304 37 51 chr12 85859915 85860166 -57926289 - L1MC4 LINE L1 -466 7422 7097 2198 92 10 0 chr12 85860166 85860460 -57925995 - AluSq SINE Alu -16 297 1 428 304 37 51 chr12 85860460 85860540 -57925915 - L1MC4 LINE L1 -791 7097 7017 690 167 0 15 chr12 85860689 85860821 -57925634 + L1PA14 LINE L1 6032 6161 0 287 322 77 4 chr12 85860860 85861093 -57925362 - L1MC4 LINE L1 -995 7047 6798 1348 223 128 15 chr12 85861099 85861507 -57924948 - L2 LINE L2 -778 2536 2083 287 222 48 0 chr12 85861782 85861845 -57924610 - LTR50 LTR ERVL 0 795 730 352 239 57 0 chr12 85861848 85861936 -57924519 - L1MA8 LINE L1 -5 6286 6194 253 216 45 75 chr12 85861942 85862076 -57924379 - LTR41 LTR ERVL -24 749 620 518 204 132 26 chr12 85862454 85862606 -57923849 - LTR50 LTR ERVL -610 185 18 26 64 0 0 chr12 85863884 85863931 -57922524 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 85864877 85864899 -57921556 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 85865009 85865030 -57921425 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 85865113 85865142 -57921313 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr12 85865331 85865368 -57921087 + AT_rich Low_complexity Low_complexity 1 37 0 267 139 5 4 chr12 85866424 85866640 -57919815 + AluSx SINE Alu 1 293 -9 2209 103 7 3 chr12 85867432 85867732 -57918723 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr12 85867892 85867914 -57918541 + AT_rich Low_complexity Low_complexity 1 22 0 454 238 65 36 chr12 85869278 85869446 -57917009 - MIR SINE MIR -43 219 47 360 0 0 0 chr12 85869472 85869512 -57916943 + (TG)n Simple_repeat Simple_repeat 2 41 0 637 175 7 7 chr12 85871278 85871421 -57915034 + CT-rich Low_complexity Low_complexity 2 144 0 2804 7 0 0 chr12 85872085 85872393 -57914062 + AluYa5 SINE Alu 1 308 -3 307 314 47 0 chr12 85872395 85872481 -57913974 - L2 LINE L2 -23 3249 3160 2280 101 0 0 chr12 85872602 85872899 -57913556 + AluSq SINE Alu 1 297 -16 379 261 22 0 chr12 85875710 85875802 -57910653 - MIR SINE MIR -120 142 49 525 286 168 0 chr12 85875918 85876138 -57910317 - LTR16C LTR ERVL -230 261 5 28 48 0 0 chr12 85878167 85878209 -57908246 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr12 85879764 85879813 -57906642 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr12 85880384 85880412 -57906043 + AT_rich Low_complexity Low_complexity 1 28 0 243 262 16 0 chr12 85880456 85880517 -57905938 - L2 LINE L2 0 3313 3252 576 233 100 0 chr12 85880527 85880677 -57905778 + MIR SINE MIR 71 235 -27 26 0 0 0 chr12 85882080 85882106 -57904349 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr12 85882358 85882407 -57904048 + AT_rich Low_complexity Low_complexity 1 49 0 1262 157 31 0 chr12 85883457 85883751 -57902704 - AluSq SINE Alu 0 384 84 2130 94 0 34 chr12 85884006 85884304 -57902151 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr12 85884304 85884332 -57902123 + AT_rich Low_complexity Low_complexity 1 28 0 380 280 37 0 chr12 85884718 85884825 -57901630 + MIR SINE MIR 151 261 -1 312 48 0 0 chr12 85885002 85885044 -57901411 + (TC)n Simple_repeat Simple_repeat 1 42 0 249 146 0 0 chr12 85885044 85885092 -57901363 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 303 192 19 chr12 85885721 85885907 -57900548 - MIR SINE MIR -10 252 34 22 0 0 0 chr12 85886403 85886425 -57900030 + AT_rich Low_complexity Low_complexity 1 22 0 300 265 139 63 chr12 85886843 85887282 -57899173 + L1ME4a LINE L1 5566 6035 -86 23 54 0 0 chr12 85887508 85887545 -57898910 + AT_rich Low_complexity Low_complexity 1 37 0 186 354 71 30 chr12 85887639 85887738 -57898717 - MIR SINE MIR -114 148 46 236 319 124 71 chr12 85888078 85888288 -57898167 - L3 LINE CR1 -144 1433 1213 419 211 25 0 chr12 85890654 85890815 -57895640 + (TA)n Simple_repeat Simple_repeat 1 165 0 294 260 0 0 chr12 85890922 85891022 -57895433 + (TA)n Simple_repeat Simple_repeat 2 101 0 250 307 62 57 chr12 85891245 85891437 -57895018 - MIR SINE MIR -11 251 59 300 333 99 14 chr12 85891855 85891996 -57894459 + MIR SINE MIR 15 167 -95 22 99 0 0 chr12 85892545 85892616 -57893839 + AT_rich Low_complexity Low_complexity 1 71 0 3958 305 141 12 chr12 85892768 85894372 -57892083 + L2 LINE L2 346 2210 -1104 1656 156 127 39 chr12 85894372 85894788 -57891667 - MLT2A2 LTR ERVL 0 453 1 3958 305 141 12 chr12 85894788 85894990 -57891465 + L2 LINE L2 2210 2385 -929 5606 140 50 4 chr12 85894998 85896147 -57890308 + L1MA5 LINE L1 5101 6300 0 1519 286 83 10 chr12 85896190 85896737 -57889718 + L2 LINE L2 2450 3032 -281 438 126 24 0 chr12 85896757 85896837 -57889618 + L1MA5 LINE L1 5850 5936 -253 414 256 35 74 chr12 85896898 85897101 -57889354 + L2 LINE L2 3119 3313 0 516 204 48 7 chr12 85897111 85897258 -57889197 + L1ME4a LINE L1 5967 6119 -2 493 256 68 14 chr12 85897950 85898184 -57888271 + MIR SINE MIR 17 262 0 1248 183 40 4 chr12 85900158 85900432 -57886023 + L1MB4 LINE L1 5896 6179 -1 933 314 96 11 chr12 85901006 85901711 -57884744 + L2 LINE L2 2204 3274 -39 341 183 0 85 chr12 85901803 85901885 -57884570 + MER116 DNA Mariner 1 75 -5 29 47 0 0 chr12 85903260 85903303 -57883152 + AT_rich Low_complexity Low_complexity 1 43 0 482 293 18 105 chr12 85903336 85903565 -57882890 - MIR SINE MIR -14 248 40 364 242 107 0 chr12 85903961 85904139 -57882316 - Charlie7 DNA MER1_type 0 2612 2416 * 1024 234 73 40 chr12 85904130 85904502 -57881953 - Charlie7 DNA MER1_type -1889 723 340 592 243 14 29 chr12 85904585 85904725 -57881730 + MER45A DNA AcHobo 1 138 -40 288 259 27 18 chr12 85904808 85904920 -57881535 - Charlie7 DNA MER1_type -2443 169 57 368 376 78 0 chr12 85905233 85905451 -57881004 + MIR SINE MIR 13 247 -15 2126 87 4 0 chr12 85905802 85906078 -57880377 + AluSx SINE Alu 3 279 -33 192 97 0 0 chr12 85906082 85906113 -57880342 + (CAA)n Simple_repeat Simple_repeat 2 32 0 234 313 132 28 chr12 85906286 85906430 -57880025 - MIR SINE MIR -52 210 52 456 276 52 0 chr12 85906950 85907066 -57879389 - L2 LINE L2 -10 3303 3182 289 261 70 35 chr12 85907102 85907217 -57879238 + MARNA DNA Mariner 373 491 -95 * 322 232 84 32 chr12 85907128 85907223 -57879232 - MARNA DNA Mariner -399 187 88 229 141 24 59 chr12 85909803 85909888 -57876567 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 221 344 211 0 chr12 85910397 85910525 -57875930 - MER5A DNA MER1_type -3 186 32 208 253 88 44 chr12 85911397 85911488 -57874967 + MIR SINE MIR 122 216 -46 218 383 112 5 chr12 85912012 85912208 -57874247 - MIR SINE MIR -42 220 4 25 0 0 0 chr12 85912453 85912478 -57873977 + AT_rich Low_complexity Low_complexity 1 25 0 311 176 0 15 chr12 85912573 85912641 -57873814 + (TATG)n Simple_repeat Simple_repeat 2 68 0 256 284 11 11 chr12 85912679 85912767 -57873688 + A-rich Low_complexity Low_complexity 2 89 0 335 325 91 20 chr12 85912799 85912996 -57873459 - MIR SINE MIR -32 230 20 28 29 0 0 chr12 85913245 85913280 -57873175 + AT_rich Low_complexity Low_complexity 1 35 0 449 254 58 14 chr12 85913280 85913418 -57873037 + MIR SINE MIR 32 175 -87 2210 214 37 45 chr12 85913481 85914098 -57872357 - LTR9 LTR ERV1 0 612 1 346 280 75 19 chr12 85914745 85915013 -57871442 + L1M4 LINE L1 2662 2944 -3202 992 260 121 21 chr12 85915568 85916130 -57870325 + L1ME2 LINE L1 981 1598 -5009 279 0 0 0 chr12 85916191 85916222 -57870233 + (CA)n Simple_repeat Simple_repeat 1 31 0 238 309 21 68 chr12 85916224 85916415 -57870040 + L1ME2 LINE L1 1420 1601 -4825 * 3031 244 80 50 chr12 85916411 85916831 -57869624 + L1ME2 LINE L1 4258 4664 -1762 1013 97 7 0 chr12 85916831 85916976 -57869479 + L1PA10 LINE L1 6004 6149 -19 180 0 0 0 chr12 85916976 85916996 -57869459 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 3031 244 80 50 chr12 85916996 85917721 -57868734 + L1ME2 LINE L1 4664 5366 -1060 221 0 0 33 chr12 85917721 85917751 -57868704 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1665 193 0 11 chr12 85917761 85918075 -57868380 + AluJo SINE Alu 1 311 0 3031 244 80 50 chr12 85918075 85918172 -57868283 + L1ME2 LINE L1 5374 5551 -875 2792 214 44 30 chr12 85918242 85918995 -57867460 + L1ME2 LINE L1 5666 6428 -16 29 70 0 0 chr12 85919375 85919432 -57867023 + AT_rich Low_complexity Low_complexity 1 57 0 1023 242 27 19 chr12 85919905 85920165 -57866290 - MIR SINE MIR 0 262 1 222 192 0 0 chr12 85921928 85921980 -57864475 + (TA)n Simple_repeat Simple_repeat 2 53 0 519 17 0 0 chr12 85923203 85923263 -57863192 + (TAAAA)n Simple_repeat Simple_repeat 1 60 0 708 269 117 8 chr12 85923387 85923636 -57862819 + MER93b LTR ERV1 98 373 0 335 253 65 39 chr12 85923968 85924122 -57862333 - L1ME4a LINE L1 0 6121 5964 272 255 128 0 chr12 85924827 85924929 -57861526 + MIR SINE MIR 141 255 -7 239 154 0 0 chr12 85925399 85925438 -57861017 - MER5B DNA MER1_type -135 43 5 220 254 18 0 chr12 85925494 85925549 -57860906 - MER5A DNA MER1_type -84 105 50 191 253 13 0 chr12 85927077 85927156 -57859299 + CT-rich Low_complexity Low_complexity 1 80 0 233 29 0 29 chr12 85930065 85930100 -57856355 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 301 346 23 8 chr12 85930260 85930393 -57856062 + MIR SINE MIR 78 212 -50 21 36 0 0 chr12 85930697 85930725 -57855730 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr12 85931284 85931327 -57855128 + AT_rich Low_complexity Low_complexity 1 43 0 487 364 78 5 chr12 85931464 85931681 -57854774 - MIR SINE MIR -16 246 14 21 57 0 0 chr12 85931683 85931718 -57854737 + AT_rich Low_complexity Low_complexity 1 35 0 435 274 0 9 chr12 85931788 85931901 -57854554 - MER81 DNA DNA 0 114 3 227 197 14 42 chr12 85932711 85932782 -57853673 + CT-rich Low_complexity Low_complexity 2 70 0 429 250 121 8 chr12 85934882 85935014 -57851441 + L2 LINE L2 3162 3308 -5 206 211 18 35 chr12 85935659 85935716 -57850739 + GA-rich Low_complexity Low_complexity 5 60 0 234 358 190 5 chr12 85935788 85936009 -57850446 - MIR SINE MIR 0 262 1 259 185 77 31 chr12 85940376 85940441 -57846014 + MIR SINE MIR 174 241 -21 275 200 15 77 chr12 85940680 85940745 -57845710 - MIR SINE MIR -194 68 8 613 198 56 0 chr12 85940792 85940918 -57845537 - FLAM_A SINE Alu 0 133 1 189 0 0 0 chr12 85942990 85943011 -57843444 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 200 35 35 0 chr12 85943502 85943531 -57842924 + (TC)n Simple_repeat Simple_repeat 1 30 0 518 257 124 28 chr12 85943932 85944150 -57842305 + MIR SINE MIR 19 257 -5 186 189 0 0 chr12 85948061 85948098 -57838357 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr12 85948798 85948830 -57837625 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 85948953 85948981 -57837474 + AT_rich Low_complexity Low_complexity 1 28 0 694 296 21 22 chr12 85951877 85952111 -57834344 - MLT1H1 LTR MaLR -328 239 1 209 329 41 0 chr12 85952121 85952194 -57834261 + L2 LINE L2 1794 1869 -1445 537 310 43 66 chr12 85952246 85952549 -57833906 + L2 LINE L2 2236 2531 -783 1147 296 70 44 chr12 85952629 85953157 -57833298 + MLT1K LTR MaLR 46 587 -1 435 348 71 32 chr12 85953157 85953610 -57832845 + L2 LINE L2 2648 3119 -153 302 246 90 33 chr12 85953712 85953834 -57832621 + L1MC4 LINE L1 6572 6700 -1342 593 293 28 31 chr12 85954512 85954742 -57831713 + MIR SINE MIR 32 256 -6 996 182 0 11 chr12 85956661 85956837 -57829618 - AluJb SINE Alu -18 294 121 21 79 0 34 chr12 85958733 85958822 -57827633 + AT_rich Low_complexity Low_complexity 1 86 0 3935 173 33 49 chr12 85959153 85960458 -57825997 + LTR49-int LTR ERV1 1979 5218 -1662 1572 224 64 8 chr12 85960458 85960833 -57825622 + MER21B LTR ERV1 457 852 -11 946 233 92 4 chr12 85961570 85961798 -57824657 + MIR SINE MIR 11 258 -4 411 204 174 0 chr12 85962029 85962127 -57824328 + L2 LINE L2 3198 3312 -1 29 47 0 0 chr12 85962313 85962356 -57824099 + AT_rich Low_complexity Low_complexity 1 43 0 238 214 71 0 chr12 85962687 85962743 -57823712 - L2 LINE L2 0 3313 3254 23 54 0 0 chr12 85964235 85964272 -57822183 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr12 85965449 85965477 -57820978 + AT_rich Low_complexity Low_complexity 1 28 0 288 263 7 25 chr12 85967110 85967262 -57819193 - MIR SINE MIR -5 257 65 1529 141 5 0 chr12 85967302 85967522 -57818933 - AluSx SINE Alu -91 221 1 498 219 34 122 chr12 85967843 85968048 -57818407 + MLT1D LTR MaLR 1 187 -318 314 198 11 66 chr12 85968048 85968139 -57818316 + L1M4 LINE L1 2890 2975 -3171 2083 218 13 91 chr12 85968145 85968357 -57818098 + L1M4 LINE L1 3047 3274 -2872 696 216 0 15 chr12 85968357 85968491 -57817964 + FLAM_A SINE Alu 2 133 0 2083 218 13 91 chr12 85968491 85968698 -57817757 + L1M4 LINE L1 3274 3496 -2650 2485 83 3 0 chr12 85968698 85969010 -57817445 + AluSp SINE Alu 1 313 0 2083 218 13 91 chr12 85969010 85969383 -57817072 + L1M4 LINE L1 3496 3778 -2368 237 139 0 0 chr12 85969554 85969597 -57816858 + (TA)n Simple_repeat Simple_repeat 2 44 0 275 189 26 25 chr12 85969825 85969916 -57816539 + MLT1D LTR MaLR 219 294 -211 268 133 0 50 chr12 85969995 85970055 -57816400 - L1MA7 LINE L1 0 6291 6235 4713 152 32 39 chr12 85970089 85970389 -57816066 - L1MA7 LINE L1 -51 6240 5940 2258 102 7 0 chr12 85970389 85970684 -57815771 - AluSg SINE Alu -13 297 1 4713 152 32 39 chr12 85970684 85971158 -57815297 - L1MA7 LINE L1 -351 5940 5465 718 167 0 51 chr12 85971158 85971296 -57815159 - FLAM_A SINE Alu -2 131 1 4713 152 32 39 chr12 85971296 85972191 -57814264 - L1MA7 LINE L1 -826 5465 4581 402 202 11 22 chr12 85972192 85972281 -57814174 + MLT1E2 LTR MaLR 539 626 0 327 298 0 58 chr12 85972428 85972549 -57813906 + MIR SINE MIR 15 128 -134 357 19 0 62 chr12 85972550 85972573 -57813882 - L1M1 LINE L1 -694 5610 5587 4163 87 33 11 chr12 85972573 85973031 -57813424 - L1MA2 LINE L1 0 6304 5828 1807 160 0 48 chr12 85973031 85973343 -57813112 - AluSx SINE Alu -14 298 2 4163 87 33 11 chr12 85973343 85973497 -57812958 - L1MA2 LINE L1 -476 5828 5679 357 19 0 62 chr12 85973497 85973542 -57812913 - L1M1 LINE L1 -717 5587 5552 499 267 22 15 chr12 85973542 85973677 -57812778 + MIR SINE MIR 122 257 -5 1773 77 8 0 chr12 85974186 85974420 -57812035 + THE1A LTR MaLR 1 236 -119 1166 135 0 0 chr12 85974423 85974593 -57811862 + AluSg/x SINE Alu 138 307 -5 746 133 75 0 chr12 85974594 85974714 -57811741 + THE1A LTR MaLR 227 355 0 2565 52 10 0 chr12 85975554 85975860 -57810595 - AluY SINE Alu -2 309 1 1155 284 110 16 chr12 85976289 85976981 -57809474 + L2 LINE L2 2552 3313 0 2594 68 0 0 chr12 85976984 85977295 -57809160 - AluY SINE Alu 0 311 1 1850 133 68 0 chr12 85977463 85977756 -57808699 - AluSq SINE Alu 0 313 1 4523 161 17 51 chr12 85978368 85978885 -57807570 - L1MA7 LINE L1 0 6291 5821 405 0 0 0 chr12 85978885 85978930 -57807525 + (TG)n Simple_repeat Simple_repeat 2 46 0 4523 161 17 51 chr12 85978930 85979377 -57807078 - L1MA7 LINE L1 -470 5821 5360 478 322 140 6 chr12 85979515 85979686 -57806769 + MER91A DNA MER1_type 1 194 -2 234 174 0 0 chr12 85979881 85979927 -57806528 + (TA)n Simple_repeat Simple_repeat 1 46 0 219 69 0 0 chr12 85979981 85980010 -57806445 + (CTG)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr12 85980942 85980967 -57805488 + (A)n Simple_repeat Simple_repeat 1 25 0 2018 132 3 0 chr12 85981046 85981342 -57805113 - AluSq SINE Alu -16 297 1 359 320 98 75 chr12 85981381 85981511 -57804944 + L1ME LINE L1 5319 5445 -676 2423 66 0 3 chr12 85981511 85981800 -57804655 - AluY SINE Alu -21 290 3 359 320 98 75 chr12 85981800 85982028 -57804427 + L1ME LINE L1 5445 5685 -436 1472 183 17 43 chr12 85984610 85984911 -57801544 + AluJo SINE Alu 1 293 -19 1865 165 3 3 chr12 85985253 85985556 -57800899 - AluSx SINE Alu -7 305 3 330 356 25 12 chr12 85986150 85986310 -57800145 - MIR3 SINE MIR -7 201 40 207 0 0 0 chr12 85986637 85986660 -57799795 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 620 50 0 0 chr12 85986662 85986742 -57799713 - AluYa5/8 SINE Alu -25 286 207 277 280 40 30 chr12 85986922 85987022 -57799433 - MIR SINE MIR -150 112 12 263 368 26 8 chr12 85987102 85987219 -57799236 + MER5B DNA MER1_type 1 119 -59 1231 103 63 49 chr12 85987520 85987743 -57798712 + MER44D DNA MER2_type 34 529 -80 896 279 18 5 chr12 85988099 85988321 -57798134 + MIR SINE MIR 35 259 -3 252 0 0 0 chr12 85989121 85989149 -57797306 + (CA)n Simple_repeat Simple_repeat 2 29 0 220 300 11 33 chr12 85989649 85989739 -57796716 + MIR3 SINE MIR 5 92 -116 384 225 88 0 chr12 85989750 85989830 -57796625 - MER81 DNA DNA -25 89 3 1182 119 11 0 chr12 85989894 85990070 -57796385 - Tigger1 DNA MER2_type -180 2238 2061 4571 173 104 16 chr12 85990080 85990519 -57795936 + MER52A LTR ERV1 1 400 -1355 2003 100 28 120 chr12 85990519 85990767 -57795688 - THE1B LTR MaLR -1 363 164 2049 125 4 0 chr12 85990767 85991046 -57795409 + AluSq SINE Alu 2 281 -32 2003 100 28 120 chr12 85991046 85991197 -57795258 - THE1B LTR MaLR -200 164 1 4571 173 104 16 chr12 85991197 85992232 -57794223 + MER52A LTR ERV1 400 1755 0 6214 205 19 4 chr12 85992232 85993602 -57792853 + L1 LINE L1 2855 4245 -1901 22 0 0 0 chr12 85993611 85993633 -57792822 + AT_rich Low_complexity Low_complexity 1 22 0 1978 145 0 0 chr12 85995022 85995312 -57791143 - AluSx SINE Alu -22 290 1 232 273 76 0 chr12 85995387 85995453 -57791002 + L2 LINE L2 3204 3274 -39 254 299 23 109 chr12 85995521 85995600 -57790855 + MIR SINE MIR 92 176 -86 2274 77 0 0 chr12 85995600 85995874 -57790581 + AluY SINE Alu 6 279 -32 225 0 0 0 chr12 85995874 85995899 -57790556 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 254 299 23 109 chr12 85995899 85995992 -57790463 + MIR SINE MIR 174 250 -12 311 377 30 6 chr12 85996279 85996446 -57790009 + L2 LINE L2 2758 2928 -386 415 280 111 40 chr12 85996491 85996944 -57789511 + L1ME3 LINE L1 5389 5887 -292 795 278 27 0 chr12 85997007 85997244 -57789211 - MIR SINE MIR 0 262 19 195 42 0 0 chr12 85997261 85997285 -57789170 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 191 36 36 0 chr12 85997290 85997318 -57789137 + (TG)n Simple_repeat Simple_repeat 1 29 0 257 359 111 15 chr12 85998361 85998559 -57787896 + L2 LINE L2 2632 2848 -466 305 278 133 7 chr12 85998708 85998859 -57787596 - MIR SINE MIR -1 261 92 22 80 0 0 chr12 85999102 85999152 -57787303 + AT_rich Low_complexity Low_complexity 1 50 0 805 259 88 81 chr12 85999176 85999655 -57786800 + L2 LINE L2 2832 3313 0 803 244 129 0 chr12 86001328 86001521 -57784934 + MER20 DNA MER1_type 2 219 0 195 339 114 65 chr12 86001770 86002157 -57784298 + L2 LINE L2 2442 2847 -467 275 378 34 7 chr12 86004107 86004255 -57782200 - MIR SINE MIR -11 251 100 217 340 188 43 chr12 86004597 86004877 -57781578 + L2 LINE L2 2752 3069 -244 40 0 0 0 chr12 86005045 86005085 -57781370 + AT_rich Low_complexity Low_complexity 1 40 0 425 250 121 8 chr12 86005687 86005819 -57780636 - L2 LINE L2 -5 3308 3162 202 146 18 55 chr12 86007920 86007975 -57778480 + GA-rich Low_complexity Low_complexity 2 54 0 445 274 0 9 chr12 86008801 86008914 -57777541 + MER81 DNA DNA 3 114 0 21 57 0 0 chr12 86008984 86009019 -57777436 + AT_rich Low_complexity Low_complexity 1 35 0 470 364 78 5 chr12 86009021 86009238 -57777217 + MIR SINE MIR 14 246 -16 29 47 0 0 chr12 86009375 86009418 -57777037 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 86009977 86010005 -57776450 + AT_rich Low_complexity Low_complexity 1 28 0 289 346 23 8 chr12 86010309 86010442 -57776013 - MIR SINE MIR -50 212 78 233 29 0 29 chr12 86010602 86010637 -57775818 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 317 305 0 0 chr12 86013546 86013628 -57772827 + GA-rich Low_complexity Low_complexity 1 82 0 220 254 18 0 chr12 86015156 86015211 -57771244 + MER5A DNA MER1_type 50 105 -84 255 167 0 0 chr12 86015264 86015306 -57771149 + MER5B DNA MER1_type 2 43 -135 272 255 128 0 chr12 86015776 86015878 -57770577 - MIR SINE MIR -7 255 141 335 253 65 39 chr12 86016583 86016737 -57769718 + L1ME4a LINE L1 5964 6121 0 697 267 116 12 chr12 86017069 86017320 -57769135 - MER93b LTR ERV1 0 373 97 294 29 0 0 chr12 86017442 86017477 -57768978 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 205 150 0 0 chr12 86018700 86018713 -57767742 + (TA)n Simple_repeat Simple_repeat 2 14 -27 189 0 0 0 chr12 86018713 86018734 -57767721 + (TG)n Simple_repeat Simple_repeat 2 22 0 205 150 0 0 chr12 86018734 86018760 -57767695 + (TA)n Simple_repeat Simple_repeat 13 41 0 215 326 116 36 chr12 86020155 86020293 -57766162 - L2 LINE L2 -11 3261 3113 185 333 18 61 chr12 86020807 86020921 -57765534 + L2 LINE L2 2397 2505 -809 4112 163 88 55 chr12 86021015 86021988 -57764467 - L1MA6 LINE L1 0 6300 5296 * 4825 198 16 36 chr12 86021984 86023172 -57763283 - L1MA6 LINE L1 -2215 3931 2768 201 328 60 0 chr12 86023180 86023247 -57763208 + L2 LINE L2 2629 2699 -615 2322 304 55 29 chr12 86023660 86024862 -57761593 - L2 LINE L2 -5 3308 2080 417 152 15 0 chr12 86025140 86025206 -57761249 + MER75B DNA T2_type 5 71 -172 1314 70 5 32 chr12 86025262 86025428 -57761027 + MER75B DNA T2_type 51 213 -291 1960 126 24 0 chr12 86025428 86025722 -57760733 - AluSx SINE Alu -11 301 1 1314 70 5 32 chr12 86025722 86025742 -57760713 + MER75B DNA T2_type 213 232 -11 180 0 0 0 chr12 86025820 86025840 -57760615 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr12 86026209 86026239 -57760216 + AT_rich Low_complexity Low_complexity 1 30 0 342 351 163 16 chr12 86026549 86026865 -57759590 + L2 LINE L2 2719 3060 -212 213 214 0 0 chr12 86028215 86028257 -57758198 + (TATG)n Simple_repeat Simple_repeat 2 43 0 606 315 26 8 chr12 86028568 86028835 -57757620 + AluSg1 SINE Alu 26 297 -12 1635 236 81 27 chr12 86029388 86029867 -57756588 + MLT1D LTR MaLR 1 505 0 390 21 0 0 chr12 86029988 86030035 -57756420 + (CAT)n Simple_repeat Simple_repeat 2 48 0 361 284 0 0 chr12 86030064 86030152 -57756303 + L2 LINE L2 3225 3312 -1 864 223 10 21 chr12 86031415 86031608 -57754847 + MIR SINE MIR 38 228 -34 344 252 81 18 chr12 86031606 86031717 -57754738 - L2 LINE L2 -7 3306 3189 * 579 230 72 13 chr12 86032322 86032474 -57753981 - L1MD2 LINE L1 -27 6332 6172 860 277 143 16 chr12 86032943 86033308 -57753147 - L3 LINE CR1 -1 1576 1166 569 161 36 9 chr12 86033369 86033481 -57752974 + AluSg/x SINE Alu 195 309 0 684 67 0 0 chr12 86033493 86033583 -57752872 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 409 386 59 22 chr12 86033604 86034011 -57752444 - L3 LINE CR1 -538 1039 618 21 0 0 0 chr12 86034573 86034594 -57751861 + AT_rich Low_complexity Low_complexity 1 21 0 182 349 63 0 chr12 86034865 86034928 -57751527 + MIR SINE MIR 39 105 -103 257 339 110 8 chr12 86035840 86035958 -57750497 - MIR SINE MIR -70 192 63 28 0 0 0 chr12 86036127 86036155 -57750300 + AT_rich Low_complexity Low_complexity 1 28 0 2394 73 3 0 chr12 86037119 86037420 -57749035 + AluY SINE Alu 1 302 -9 263 296 83 9 chr12 86038465 86038573 -57747882 + L2 LINE L2 3153 3268 -4 207 0 0 0 chr12 86039528 86039551 -57746904 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 197 176 0 0 chr12 86041106 86041140 -57745315 - L2 LINE L2 0 3313 3280 374 300 86 91 chr12 86041864 86042074 -57744381 + L2 LINE L2 2889 3097 -175 571 310 43 0 chr12 86042322 86042509 -57743946 + MIR SINE MIR 2 196 -66 1212 142 58 0 chr12 86042672 86042877 -57743578 + MER20 DNA MER1_type 3 219 0 316 356 107 14 chr12 86043019 86043235 -57743220 - MIR SINE MIR -11 251 16 186 222 111 102 chr12 86043572 86043680 -57742775 + MIR3 SINE MIR 6 114 -94 182 284 14 68 chr12 86044161 86044235 -57742220 - L2 LINE L2 0 3272 3203 216 224 17 0 chr12 86044704 86044762 -57741693 + (TTA)n Simple_repeat Simple_repeat 3 61 0 250 271 94 0 chr12 86045236 86045321 -57741134 + MLT1J LTR MaLR 400 492 -19 1950 213 59 33 chr12 86045512 86045861 -57740594 + L1ME1 LINE L1 5169 5530 -636 2036 116 17 7 chr12 86045861 86046153 -57740302 - AluSx SINE Alu -13 299 5 1950 213 59 33 chr12 86046153 86046451 -57740004 + L1ME1 LINE L1 5530 5819 -347 739 171 0 0 chr12 86046456 86046579 -57739876 + FLAM_C SINE Alu 1 123 -20 971 261 44 24 chr12 86046585 86046926 -57739529 + L1ME1 LINE L1 5810 6157 -9 25 51 0 0 chr12 86047494 86047533 -57738922 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr12 86047634 86047679 -57738776 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 86048091 86048113 -57738342 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 86048999 86049023 -57737432 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 540 142 0 83 chr12 86051211 86051331 -57735124 - MER53 DNA DNA -1 188 79 376 313 30 15 chr12 86051509 86051640 -57734815 - L2 LINE L2 -955 2359 2227 292 293 38 0 chr12 86051895 86052028 -57734427 - L1ME4a LINE L1 -15 6106 5969 597 292 103 10 chr12 86052080 86052381 -57734074 - L1MC4a LINE L1 -1922 5886 5558 2393 207 29 16 chr12 86054507 86055023 -57731432 + MER82 DNA MER2_type 5 527 -126 746 231 12 0 chr12 86058698 86058871 -57727584 - MER5B DNA MER1_type -3 175 1 551 268 114 85 chr12 86058871 86059120 -57727335 - MLT1L LTR MaLR -54 561 321 1445 202 52 0 chr12 86059120 86059407 -57727048 - AluJo SINE Alu 0 302 1 551 268 114 85 chr12 86059407 86059676 -57726779 - MLT1L LTR MaLR -294 321 28 2057 118 3 0 chr12 86060447 86060735 -57725720 + AluSp SINE Alu 1 289 -24 279 164 0 0 chr12 86061294 86061355 -57725100 + (TA)n Simple_repeat Simple_repeat 1 61 0 250 252 36 45 chr12 86062103 86062214 -57724241 + L3 LINE CR1 1120 1229 -348 410 286 71 14 chr12 86062349 86062489 -57723966 - MER91B DNA MER1_type -5 185 38 3860 207 0 9 chr12 86064052 86064906 -57721549 + L1 LINE L1 4151 4996 -1150 3586 56 26 4 chr12 86066261 86067009 -57719446 - L1P2 LINE L1 -419 5735 4976 337 312 45 84 chr12 86067187 86067227 -57719228 - L3 LINE CR1 -608 969 929 573 88 0 0 chr12 86067227 86067307 -57719148 + MADE1 DNA Mariner 1 80 0 337 312 45 84 chr12 86067307 86067577 -57718878 - L3 LINE CR1 -648 929 671 21 36 0 0 chr12 86067845 86067873 -57718582 + AT_rich Low_complexity Low_complexity 1 28 0 1944 162 0 9 chr12 86069228 86069543 -57716912 + AluJo SINE Alu 1 312 0 210 242 0 15 chr12 86069784 86069850 -57716605 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 2220 80 0 55 chr12 86070681 86071008 -57715447 + AluY SINE Alu 1 309 -2 327 269 120 9 chr12 86071074 86071182 -57715273 + MIR SINE MIR 23 142 -66 218 292 0 0 chr12 86071695 86071743 -57714712 - L2 LINE L2 -11 3302 3255 261 0 0 0 chr12 86072033 86072062 -57714393 + (CA)n Simple_repeat Simple_repeat 2 30 0 285 89 0 0 chr12 86072062 86072107 -57714348 + (GA)n Simple_repeat Simple_repeat 1 45 0 891 287 62 39 chr12 86072554 86072820 -57713635 + L1ME2 LINE L1 5328 5586 -578 2377 94 0 0 chr12 86072820 86073119 -57713336 + AluSx SINE Alu 1 299 -13 891 287 62 39 chr12 86073119 86073462 -57712993 + L1ME2 LINE L1 5586 5951 -213 225 154 0 0 chr12 86073583 86073622 -57712833 + GA-rich Low_complexity Low_complexity 3 41 0 690 143 0 0 chr12 86074407 86074512 -57711943 - LTR12 LTR ERV1 -129 585 481 250 323 10 0 chr12 86074513 86074612 -57711843 - LTR30 LTR ERV1 -79 643 544 1513 64 3 217 chr12 86074617 86074963 -57711492 - LTR12 LTR ERV1 -442 272 1 239 170 0 57 chr12 86075570 86075623 -57710832 + MER66B LTR ERV1 295 344 -142 243 0 0 0 chr12 86075626 86075653 -57710802 + (A)n Simple_repeat Simple_repeat 1 27 0 459 35 0 0 chr12 86076729 86076786 -57709669 + (CA)n Simple_repeat Simple_repeat 2 58 0 40 49 0 0 chr12 86077500 86077561 -57708894 + AT_rich Low_complexity Low_complexity 1 61 0 210 143 0 0 chr12 86077612 86077647 -57708808 + (TA)n Simple_repeat Simple_repeat 2 36 0 397 374 6 0 chr12 86077895 86078074 -57708381 - L3 LINE CR1 -310 1267 1088 360 299 6 35 chr12 86078177 86078255 -57708200 - L1M4 LINE L1 -1879 4267 4188 2799 13 0 6 chr12 86078255 86078568 -57707887 - AluYa5 SINE Alu 0 311 1 360 299 6 35 chr12 86078568 86078663 -57707792 - L1M4 LINE L1 -1958 4188 4099 340 279 44 97 chr12 86078719 86078945 -57707510 - MIR SINE MIR -1 261 48 234 169 28 14 chr12 86079039 86079110 -57707345 + CT-rich Low_complexity Low_complexity 3 74 0 237 315 103 79 chr12 86079178 86079381 -57707074 - L3 LINE CR1 -760 817 610 879 322 24 32 chr12 86080280 86080656 -57705799 - MLT1I LTR MaLR 0 409 37 1311 280 188 31 chr12 86082903 86083749 -57702706 + L2 LINE L2 2235 3224 -89 259 348 11 0 chr12 86085781 86085870 -57700585 + L2 LINE L2 3136 3225 -47 465 191 0 0 chr12 86086814 86086903 -57699552 + AluJ/FRAM SINE Alu 217 305 -7 582 372 58 11 chr12 86087123 86087502 -57698953 + L2 LINE L2 2572 2968 -346 583 317 50 51 chr12 86087523 86087986 -57698469 - L2 LINE L2 -39 3233 2773 243 254 0 56 chr12 86088225 86088296 -57698159 + L2 LINE L2 3245 3311 -2 635 269 46 34 chr12 86088529 86088633 -57697822 + MER5B DNA MER1_type 2 110 -68 776 191 11 38 chr12 86088633 86088816 -57697639 - MER5B DNA MER1_type 0 178 1 635 269 46 34 chr12 86088816 86088886 -57697569 + MER5B DNA MER1_type 110 178 0 455 291 11 56 chr12 86088897 86089076 -57697379 - MER5A DNA MER1_type -3 186 16 385 235 84 14 chr12 86089267 86089374 -57697081 + MER5B DNA MER1_type 18 139 -50 792 183 0 0 chr12 86090448 86090579 -57695876 - Tigger7 DNA MER2_type -558 147 17 211 333 22 44 chr12 86090634 86090724 -57695731 - MER5A DNA MER1_type -101 88 1 412 312 16 51 chr12 86090808 86091001 -57695454 - MIR SINE MIR -73 135 2 395 328 25 44 chr12 86091724 86091928 -57694527 + MLT1J LTR MaLR 234 433 -78 303 341 77 55 chr12 86092072 86092292 -57694163 - L2 LINE L2 -244 3069 2845 1928 113 15 0 chr12 86093528 86093802 -57692653 + AluSx SINE Alu 22 299 -13 11410 201 14 18 chr12 86093879 86095745 -57690710 - L1P LINE L1 -915 5231 3374 2232 48 4 0 chr12 86095745 86096015 -57690440 - AluY SINE Alu 0 311 41 11410 201 14 18 chr12 86096015 86096717 -57689738 - L1P LINE L1 -2772 3374 2671 317 300 59 80 chr12 86097690 86097927 -57688528 - L2 LINE L2 -33 3239 3008 345 261 152 14 chr12 86097936 86098074 -57688381 - MIR3 SINE MIR -5 203 47 309 253 268 53 chr12 86099479 86099859 -57686596 + L1M2 LINE L1 663 1124 -5725 286 326 0 10 chr12 86100297 86100395 -57686060 + GA-rich Low_complexity Low_complexity 2 98 0 266 268 12 71 chr12 86101896 86102112 -57684343 + MIR SINE MIR 56 220 -42 201 337 61 10 chr12 86102125 86102223 -57684232 - L2 LINE L2 0 3272 3170 194 246 43 43 chr12 86102601 86102670 -57683785 + L2 LINE L2 3208 3276 -37 406 271 106 0 chr12 86103150 86103301 -57683154 - MIR SINE MIR -6 256 90 2098 129 3 0 chr12 86103360 86103669 -57682786 - AluSx SINE Alu -2 310 1 217 168 42 14 chr12 86103769 86103912 -57682543 + (TA)n Simple_repeat Simple_repeat 1 147 0 523 238 92 32 chr12 86104493 86104678 -57681777 - L2 LINE L2 -5 3308 3113 2274 80 10 7 chr12 86105100 86105400 -57681055 + AluSp SINE Alu 5 305 -8 23 0 0 0 chr12 86105403 86105426 -57681029 + AT_rich Low_complexity Low_complexity 1 23 0 242 267 93 47 chr12 86105752 86105838 -57680617 - L2 LINE L2 -5 3267 3178 753 282 10 0 chr12 86105886 86106092 -57680363 - MER63A DNA MER1_type 0 210 3 219 139 0 0 chr12 86106580 86106616 -57679839 + (TTC)n Simple_repeat Simple_repeat 2 37 0 25 31 0 0 chr12 86106632 86106664 -57679791 + AT_rich Low_complexity Low_complexity 1 32 0 269 286 157 7 chr12 86108076 86108223 -57678232 - L1MC/D LINE L1 -1944 5864 5696 2060 102 0 11 chr12 86108638 86108922 -57677533 + AluSc SINE Alu 9 289 -20 683 187 100 26 chr12 86108922 86109152 -57677303 - L1MA8 LINE L1 -28 6263 6017 206 271 59 59 chr12 86110015 86110100 -57676355 - L2 LINE L2 -1 3312 3228 1127 322 118 45 chr12 86110202 86111276 -57675179 - L2 LINE L2 -196 3076 1915 252 0 0 0 chr12 86111379 86111407 -57675048 + (TG)n Simple_repeat Simple_repeat 2 29 0 296 174 45 8 chr12 86111421 86111553 -57674902 + (TA)n Simple_repeat Simple_repeat 1 137 0 252 0 0 0 chr12 86111553 86111581 -57674874 + (GA)n Simple_repeat Simple_repeat 2 29 0 342 0 0 0 chr12 86112576 86112614 -57673841 + (TG)n Simple_repeat Simple_repeat 2 39 0 294 174 43 9 chr12 86112614 86112729 -57673726 + (TA)n Simple_repeat Simple_repeat 1 119 0 216 0 0 0 chr12 86112756 86112780 -57673675 + (GA)n Simple_repeat Simple_repeat 2 25 0 231 114 0 0 chr12 86113317 86113352 -57673103 + (A)n Simple_repeat Simple_repeat 1 35 0 258 250 102 56 chr12 86113504 86113612 -57672843 - MIR SINE MIR -80 128 16 308 311 170 0 chr12 86113626 86113732 -57672723 + L2 LINE L2 3148 3271 -1 1771 130 3 45 chr12 86113743 86114035 -57672420 + AluJb SINE Alu 7 286 -26 29 0 0 0 chr12 86117342 86117371 -57669084 + AT_rich Low_complexity Low_complexity 1 29 0 1763 46 0 0 chr12 86117542 86117761 -57668694 + L1PA4 LINE L1 5934 6152 -3 1206 157 18 5 chr12 86117779 86118002 -57668453 + L1PA14 LINE L1 5936 6161 0 790 289 21 4 chr12 86119085 86119320 -57667135 + MIR SINE MIR 1 239 -23 395 38 19 0 chr12 86119940 86119993 -57666462 + (CA)n Simple_repeat Simple_repeat 1 54 0 200 361 85 15 chr12 86120140 86120270 -57666185 - L2 LINE L2 -2 3311 3173 349 311 81 19 chr12 86120827 86120988 -57665467 - MIR SINE MIR 0 262 92 187 333 0 0 chr12 86121102 86121135 -57665320 + T-rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr12 86121798 86121833 -57664622 + AT_rich Low_complexity Low_complexity 1 35 0 1623 164 45 0 chr12 86122066 86122371 -57664084 - AluJb SINE Alu 0 317 1 3167 181 63 83 chr12 86122378 86122780 -57663675 - L1MB7 LINE L1 0 6184 5776 2031 113 17 7 chr12 86122780 86123080 -57663375 - AluSx SINE Alu -9 303 1 3167 181 63 83 chr12 86123080 86123196 -57663259 - L1MB7 LINE L1 -408 5776 5659 1549 180 69 3 chr12 86123196 86123485 -57662970 - AluJo SINE Alu -4 308 1 3167 181 63 83 chr12 86123485 86123647 -57662808 - L1MB7 LINE L1 -525 5659 5495 1822 154 6 25 chr12 86123647 86123965 -57662490 - AluSx SINE Alu 0 312 1 3167 181 63 83 chr12 86123965 86124202 -57662253 - L1MB7 LINE L1 -689 5495 5283 582 179 27 0 chr12 86124223 86124335 -57662120 - L1MB7 LINE L1 -1209 4937 4823 1447 171 25 204 chr12 86124358 86125110 -57661345 - L1M4 LINE L1 -890 5754 5137 3385 148 73 0 chr12 86125127 86125703 -57660752 - MER39B LTR ERV1 -32 621 4 546 221 16 0 chr12 86125704 86125831 -57660624 - L1M4 LINE L1 -1519 5125 4997 4419 233 51 46 chr12 86125839 86126190 -57660265 - L1M4 LINE L1 -2606 4038 3690 2190 111 3 0 chr12 86126190 86126487 -57659968 - AluSc SINE Alu -11 298 1 4419 233 51 46 chr12 86126487 86128445 -57658010 - L1M4 LINE L1 -2954 3690 16 427 374 38 24 chr12 86128624 86128964 -57657491 + L2 LINE L2 2467 2811 -503 509 265 30 60 chr12 86129137 86129337 -57657118 + L2 LINE L2 3120 3313 0 1799 171 6 51 chr12 86129919 86130271 -57656184 + MER1B DNA MER1_type 2 337 0 5457 157 24 25 chr12 86131252 86132295 -57654160 - L1MC3 LINE L1 -4 7781 6740 1050 212 32 0 chr12 86132378 86132595 -57653860 - MER58A DNA MER1_type 0 224 1 260 301 0 0 chr12 86132629 86132702 -57653753 + GA-rich Low_complexity Low_complexity 2 74 0 1929 123 0 20 chr12 86133012 86133299 -57653156 + AluSg1 SINE Alu 3 284 -20 195 69 0 0 chr12 86133299 86133328 -57653127 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 22 0 0 0 chr12 86133363 86133385 -57653070 + AT_rich Low_complexity Low_complexity 1 22 0 438 151 67 67 chr12 86134590 86134709 -57651746 - LTR33A LTR ERVL 0 523 405 649 341 14 18 chr12 86135039 86135262 -57651193 - MIR SINE MIR -28 234 13 2295 193 40 7 chr12 86135263 86135708 -57650747 - MER66B LTR ERV1 0 486 27 320 331 60 11 chr12 86136427 86136611 -57649844 + LTR37B LTR ERV1 6 198 -270 587 227 94 35 chr12 86136657 86136913 -57649542 + LTR37B LTR ERV1 198 468 0 3005 244 73 32 chr12 86136977 86137806 -57648649 - Zaphod DNA AcHobo 0 4031 3137 2375 62 7 7 chr12 86137806 86138111 -57648344 - AluY SINE Alu -6 305 1 3005 244 73 32 chr12 86138111 86138467 -57647988 - Zaphod DNA AcHobo -894 3137 2797 506 278 98 8 chr12 86138980 86139306 -57647149 - Zaphod DNA AcHobo -1219 2812 2410 449 242 23 0 chr12 86139334 86139462 -57646993 - Zaphod DNA AcHobo -3279 752 622 1178 182 95 13 chr12 86139466 86139774 -57646681 - MER33 DNA MER1_type -1 323 1 989 272 118 17 chr12 86139774 86140173 -57646282 - Zaphod DNA AcHobo -3415 616 177 382 18 36 0 chr12 86140342 86140397 -57646058 + (TC)n Simple_repeat Simple_repeat 1 57 0 306 0 0 0 chr12 86140397 86140431 -57646024 + (TG)n Simple_repeat Simple_repeat 1 34 0 195 42 0 0 chr12 86140430 86140454 -57646001 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 3807 79 2 0 chr12 86140740 86141248 -57645207 - L1PA10 LINE L1 -9 6159 5651 2690 87 5 25 chr12 86141248 86141649 -57644806 + L1PA10 LINE L1 5265 5657 -511 37 69 0 0 chr12 86142538 86142610 -57643845 + AT_rich Low_complexity Low_complexity 1 72 0 222 219 0 0 chr12 86142647 86142688 -57643767 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 260 266 18 55 chr12 86142714 86142823 -57643632 - MIR SINE MIR -56 206 102 27 0 0 0 chr12 86143580 86143607 -57642848 + AT_rich Low_complexity Low_complexity 1 27 0 283 213 0 53 chr12 86143982 86144057 -57642398 + MIR SINE MIR 187 257 -5 209 292 182 19 chr12 86144833 86144987 -57641468 + L2 LINE L2 3040 3218 -95 192 77 0 0 chr12 86145049 86145075 -57641380 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1519 138 86 61 chr12 86145561 86145887 -57640568 + MER1B DNA MER1_type 1 334 -5 312 298 92 15 chr12 86146212 86146343 -57640112 - MLT1I LTR MaLR -20 389 249 3671 125 26 39 chr12 86146830 86147448 -57639007 + MER4B LTR ERV1 1 610 0 493 279 61 18 chr12 86148216 86148381 -57638074 - MIR SINE MIR 0 262 91 1879 137 7 3 chr12 86148834 86149118 -57637337 + AluSx SINE Alu 9 293 -19 258 194 28 14 chr12 86149531 86149603 -57636852 + CT-rich Low_complexity Low_complexity 2 74 0 228 253 42 0 chr12 86149566 86149661 -57636794 + (TTCA)n Simple_repeat Simple_repeat 2 100 0 * 553 67 0 22 chr12 86149661 86149750 -57636705 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 1983 137 3 0 chr12 86149762 86150047 -57636408 - AluSx SINE Alu -22 290 5 1446 253 38 36 chr12 86150071 86150625 -57635830 - Charlie2 DNA MER1_type -528 2334 1780 1209 253 55 3 chr12 86150690 86151034 -57635421 - Charlie2a DNA MER1_type -1922 940 579 615 304 23 8 chr12 86151324 86151581 -57634874 + L1MC4a LINE L1 5665 5925 -1883 238 237 21 10 chr12 86152029 86152126 -57634329 + (TA)n Simple_repeat Simple_repeat 2 99 0 520 167 102 0 chr12 86152395 86152503 -57633952 + FRAM SINE Alu 43 161 -15 26 30 0 0 chr12 86152580 86152613 -57633842 + AT_rich Low_complexity Low_complexity 1 33 0 192 382 0 13 chr12 86153036 86153112 -57633343 - L3 LINE CR1 -41 1536 1462 310 315 41 14 chr12 86153112 86153258 -57633197 - L3 LINE CR1 -236 1341 1192 228 240 40 13 chr12 86153468 86153543 -57632912 - L1 LINE L1 -2207 3939 3863 2248 63 40 0 chr12 86153572 86153871 -57632584 - AluY SINE Alu 0 311 1 253 302 78 39 chr12 86153921 86154050 -57632405 + MER20B DNA MER1_type 4 137 -646 6801 48 33 7 chr12 86154133 86155038 -57631417 - L1PA6 LINE L1 -6 6148 5232 4515 212 7 10 chr12 86155525 86156559 -57629896 - L1 LINE L1 -1150 4996 3966 2600 122 40 20 chr12 86156679 86157130 -57629325 - L1PB4 LINE L1 -309 5847 5388 22 35 0 0 chr12 86157282 86157311 -57629144 + AT_rich Low_complexity Low_complexity 1 29 0 1979 209 65 1 chr12 86157343 86157826 -57628629 - L1MA8 LINE L1 -1 6290 5781 228 70 23 23 chr12 86157795 86157838 -57628617 + L1MA8 LINE L1 5760 5802 -510 * 1328 133 18 0 chr12 86157838 86158063 -57628392 - Tigger4(Zombi) DNA MER2_type -1 2730 2502 911 105 0 0 chr12 86158357 86158481 -57627974 - AluSg/x SINE Alu -15 297 174 383 291 102 58 chr12 86158757 86159052 -57627403 - L1 LINE L1 -3618 2528 2221 1157 160 5 5 chr12 86159794 86160006 -57626449 + L1PA15 LINE L1 5954 6165 0 530 319 102 0 chr12 86160069 86160210 -57626245 + MIR SINE MIR 15 187 -75 425 18 0 18 chr12 86160210 86160265 -57626190 + (TG)n Simple_repeat Simple_repeat 2 55 0 530 319 102 0 chr12 86160265 86160339 -57626116 + MIR SINE MIR 187 252 -10 333 308 88 15 chr12 86160592 86160745 -57625710 + MIR3 SINE MIR 2 167 -41 3406 222 45 69 chr12 86161849 86162579 -57623876 - L1ME LINE L1 -703 5463 4717 1874 189 22 6 chr12 86162579 86162938 -57623517 - MLT1A1 LTR MaLR 0 365 1 3406 222 45 69 chr12 86162938 86163088 -57623367 - L1ME LINE L1 -1449 4717 4565 288 130 0 0 chr12 86163088 86163134 -57623321 + MADE1 DNA Mariner 1 46 -34 3406 222 45 69 chr12 86163134 86164228 -57622227 - L1ME LINE L1 -1601 4565 3473 645 186 7 57 chr12 86164441 86164581 -57621874 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr12 86164629 86164650 -57621805 + AT_rich Low_complexity Low_complexity 1 21 0 1994 113 13 10 chr12 86165605 86165916 -57620539 + AluSx SINE Alu 1 312 0 329 156 180 117 chr12 86167413 86167541 -57618914 - MER103 DNA DNA -30 136 1 1171 168 0 35 chr12 86167936 86168138 -57618317 + AluJo SINE Alu 12 206 -106 5230 138 11 35 chr12 86168139 86169216 -57617239 + L1PA16 LINE L1 5113 6166 0 1359 276 43 42 chr12 86169216 86169718 -57616737 + L2 LINE L2 2511 3011 -302 499 259 9 0 chr12 86169718 86169834 -57616621 + L2 LINE L2 3191 3307 -6 220 303 72 40 chr12 86169884 86170036 -57616419 - L2 LINE L2 -191 3081 2925 447 295 225 12 chr12 86170042 86170371 -57616084 - L2 LINE L2 -2 3311 2913 26 64 0 0 chr12 86170687 86170734 -57615721 + AT_rich Low_complexity Low_complexity 1 47 0 238 243 45 63 chr12 86171002 86171113 -57615342 - L1MEd LINE L1 -5359 760 652 1509 188 23 23 chr12 86171204 86171513 -57614942 - AluJb SINE Alu -3 309 1 364 269 70 65 chr12 86171706 86171892 -57614563 - L1MEd LINE L1 -5914 205 19 1789 176 48 6 chr12 86171977 86172307 -57614148 + MER7A DNA MER2_type 1 342 -4 393 296 85 42 chr12 86172471 86172731 -57613724 + L1MCc LINE L1 169 439 -5984 853 241 17 61 chr12 86172865 86173159 -57613296 + L1MCc LINE L1 745 1025 -5398 1128 176 77 4 chr12 86173256 86173489 -57612966 - MER58B DNA MER1_type -26 315 66 408 180 180 14 chr12 86173574 86173713 -57612742 + L1MCc LINE L1 2655 2816 -4306 1697 173 92 6 chr12 86174180 86174516 -57611939 + MLT1A1 LTR MaLR 1 365 0 1345 182 15 111 chr12 86174516 86174912 -57611543 - MLT1A2 LTR MaLR -16 358 1 357 132 0 0 chr12 86175775 86175828 -57610627 + MLT2B2 LTR ERVL 1 53 -501 1129 194 83 0 chr12 86175828 86176044 -57610411 + Tigger7 DNA MER2_type 1 234 -471 435 171 38 29 chr12 86176045 86176150 -57610305 + Tigger7 DNA MER2_type 2386 2491 0 1992 209 65 22 chr12 86176150 86176595 -57609860 + MLT2B2 LTR ERVL 52 515 0 180 373 0 0 chr12 86176653 86176712 -57609743 - L2 LINE L2 -13 3259 3201 215 259 106 24 chr12 86177001 86177086 -57609369 + MIR SINE MIR 100 191 -71 339 330 0 0 chr12 86177111 86177214 -57609241 + MIR SINE MIR 160 262 0 314 360 22 29 chr12 86177396 86177532 -57608923 - MIR SINE MIR -108 154 20 796 268 34 21 chr12 86177580 86177819 -57608636 - MIR SINE MIR -3 259 18 343 348 76 33 chr12 86178010 86178286 -57608169 - L3 LINE CR1 -49 1528 1241 197 268 107 0 chr12 86178256 86178312 -57608143 - L2 LINE L2 -4 3268 3207 * 838 273 41 25 chr12 86178654 86178896 -57607559 - MIR SINE MIR -3 259 14 226 233 0 0 chr12 86179020 86179063 -57607392 - MIR SINE MIR -70 192 150 348 287 219 50 chr12 86179074 86179475 -57606980 + L2 LINE L2 2828 3296 -17 248 114 0 0 chr12 86179861 86179905 -57606550 + MADE1 DNA Mariner 37 80 0 517 296 41 96 chr12 86179910 86180255 -57606200 - L3 LINE CR1 -659 918 593 209 241 17 0 chr12 86180444 86180502 -57605953 + (TA)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chr12 86181555 86181577 -57604878 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 333 268 89 0 chr12 86181635 86181747 -57604708 - L2 LINE L2 0 3313 3192 1748 147 27 10 chr12 86182093 86182392 -57604063 + AluSx SINE Alu 1 304 -8 212 328 137 33 chr12 86184111 86184294 -57602161 + L2 LINE L2 2933 3134 -179 730 285 191 32 chr12 86184329 86184768 -57601687 + L2 LINE L2 2805 3313 0 249 243 243 9 chr12 86184789 86184896 -57601559 + L2 LINE L2 3182 3313 0 297 311 77 16 chr12 86185476 86185659 -57600796 + ERVL-E LTR ERVL 4897 5090 -674 385 321 76 5 chr12 86185748 86185932 -57600523 + ERVL-E LTR ERVL 5235 5431 -333 262 321 54 18 chr12 86186312 86186424 -57600031 + MLT2E LTR ERVL 35 150 -478 2171 63 21 0 chr12 86186847 86187134 -57599321 - L1PA5 LINE L1 0 6154 5862 474 259 9 0 chr12 86187223 86187335 -57599120 + Tigger3(Golem) DNA MER2_type 30 142 -2887 1239 161 22 22 chr12 86187340 86187563 -57598892 + Tigger3(Golem) DNA MER2_type 2800 3022 -7 877 325 24 0 chr12 86187579 86187828 -57598627 - MIR SINE MIR -6 256 2 437 293 127 0 chr12 86188055 86188205 -57598250 - MIR SINE MIR -2 260 92 190 308 233 0 chr12 86189440 86189560 -57596895 - MIR3 SINE MIR -7 201 54 554 154 90 75 chr12 86189932 86190120 -57596335 + Charlie5 DNA MER1_type 2391 2581 -31 24 85 0 0 chr12 86190745 86190804 -57595651 + AT_rich Low_complexity Low_complexity 1 59 0 588 177 96 30 chr12 86190875 86191073 -57595382 - Charlie5 DNA MER1_type -10 2602 2392 227 333 32 0 chr12 86191329 86191455 -57595000 - LTR67 LTR ERVL -9 548 419 264 143 0 0 chr12 86192254 86192303 -57594152 - L1MB1 LINE L1 0 6168 6120 5749 25 0 0 chr12 86192303 86192972 -57593483 - L1PA3 LINE L1 0 6155 5487 14836 45 1 3 chr12 86192972 86194878 -57591577 + L1PA3 LINE L1 3606 5503 -743 324 139 83 14 chr12 86194834 86194906 -57591549 - L1MB1 LINE L1 -54 6135 6059 * 812 300 81 10 chr12 86196465 86196762 -57589693 - L2 LINE L2 -6 3307 2990 396 59 0 0 chr12 86197124 86197175 -57589280 + (TG)n Simple_repeat Simple_repeat 2 52 0 1564 180 3 28 chr12 86197203 86197492 -57588963 - AluJo SINE Alu -30 282 1 188 289 213 52 chr12 86198718 86198967 -57587488 - L2 LINE L2 -1263 2051 1763 27 29 0 0 chr12 86199710 86199744 -57586711 + AT_rich Low_complexity Low_complexity 1 34 0 628 281 128 31 chr12 86199859 86200651 -57585804 - L1MDa LINE L1 -4559 1521 529 183 273 23 0 chr12 86201017 86201061 -57585394 + L2 LINE L2 2928 2972 -342 275 284 32 21 chr12 86201229 86201324 -57585131 - L2 LINE L2 0 3313 3218 1303 161 6 106 chr12 86201325 86201666 -57584789 + AluJo SINE Alu 1 307 -5 722 304 61 0 chr12 86201743 86201973 -57584482 + MIR SINE MIR 18 261 -1 28 0 0 0 chr12 86202357 86202385 -57584070 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 86202456 86202477 -57583978 + AT_rich Low_complexity Low_complexity 1 21 0 2053 150 32 0 chr12 86202798 86203139 -57583316 + MER65A LTR ERV1 61 412 -33 24 32 0 0 chr12 86203645 86203676 -57582779 + AT_rich Low_complexity Low_complexity 1 31 0 5424 127 26 17 chr12 86203676 86204637 -57581818 - L1PA16 LINE L1 -9 6157 5191 3191 212 77 46 chr12 86205031 86205688 -57580767 - L1MA9 LINE L1 -29 6283 5578 1529 199 14 17 chr12 86205688 86205985 -57580470 - AluJo SINE Alu -12 300 5 3191 212 77 46 chr12 86205985 86206414 -57580041 - L1MA9 LINE L1 -734 5578 5164 21 0 0 0 chr12 86206552 86206573 -57579882 + AT_rich Low_complexity Low_complexity 1 21 0 199 262 16 33 chr12 86206664 86206725 -57579730 + MIR3 SINE MIR 116 175 -33 672 62 0 21 chr12 86206804 86206900 -57579555 + L1PA8 LINE L1 6079 6172 0 1486 271 90 20 chr12 86207105 86207813 -57578642 + L1ME LINE L1 3788 4545 -1601 891 194 0 25 chr12 86207847 86208007 -57578448 - AluJ SINE Alu -27 285 130 536 133 0 33 chr12 86208007 86208127 -57578328 + (TTTTC)n Simple_repeat Simple_repeat 1 116 0 554 160 0 120 chr12 86208127 86208277 -57578178 - AluJ SINE Alu -170 132 1 878 265 65 38 chr12 86208302 86208832 -57577623 + MLT1E1 LTR MaLR 43 654 0 1459 239 60 62 chr12 86208855 86209795 -57576660 + L1ME LINE L1 4564 5499 -671 270 0 0 0 chr12 86211003 86211033 -57575422 + (TG)n Simple_repeat Simple_repeat 2 31 0 355 202 0 67 chr12 86211202 86211291 -57575164 + MIR SINE MIR 180 262 0 214 307 34 11 chr12 86211999 86212087 -57574368 - MIR SINE MIR -14 248 159 1371 184 10 59 chr12 86212254 86212558 -57573897 - AluJo SINE Alu -2 310 22 321 280 80 40 chr12 86212879 86213029 -57573426 - MIR SINE MIR -90 172 17 802 282 81 81 chr12 86213568 86213701 -57572754 - MLT1J2 LTR MaLR -3 447 315 2265 71 0 0 chr12 86213701 86213982 -57572473 + AluY SINE Alu 2 281 -30 307 0 0 0 chr12 86213982 86214016 -57572439 + (TAAA)n Simple_repeat Simple_repeat 1 148 0 802 282 81 81 chr12 86214016 86214313 -57572142 - MLT1J2 LTR MaLR -134 316 15 650 298 15 50 chr12 86214302 86214564 -57571891 - Charlie8 DNA MER1_type -2164 253 1 * 185 328 49 0 chr12 86214842 86214903 -57571552 - L2 LINE L2 -86 3186 3123 2015 109 4 0 chr12 86214926 86215192 -57571263 + AluSx SINE Alu 31 297 -15 509 263 61 85 chr12 86215514 86215761 -57570694 + MLT1J LTR MaLR 119 359 -152 212 228 13 25 chr12 86215803 86215882 -57570573 + T-rich Low_complexity Low_complexity 4 81 0 204 276 103 0 chr12 86215883 86215941 -57570514 + MIR3 SINE MIR 93 156 -52 498 80 0 57 chr12 86216405 86216493 -57569962 - L1MA7 LINE L1 -15 6276 6194 2252 68 0 0 chr12 86217092 86217402 -57569053 - AluY SINE Alu 0 310 1 200 288 0 0 chr12 86217423 86217489 -57568966 + A-rich Low_complexity Low_complexity 1 66 0 23 78 0 0 chr12 86219196 86219247 -57567208 + AT_rich Low_complexity Low_complexity 1 51 0 15708 140 29 16 chr12 86219816 86221084 -57565371 - Tigger4(Zombi) DNA MER2_type 0 2731 1481 1984 131 0 7 chr12 86221084 86221391 -57565064 + AluSx SINE Alu 1 305 0 15708 140 29 16 chr12 86221391 86222815 -57563640 - Tigger4(Zombi) DNA MER2_type -1250 1481 2 1054 64 35 12 chr12 86224322 86224494 -57561961 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 376 321 32 60 chr12 86224656 86224905 -57561550 + MIR SINE MIR 20 261 -1 243 0 0 0 chr12 86225516 86225543 -57560912 + (TA)n Simple_repeat Simple_repeat 2 28 0 2034 171 24 80 chr12 86226228 86226796 -57559659 + L1MB7 LINE L1 4892 5490 -694 15993 136 30 12 chr12 86226796 86227628 -57558827 + Tigger4(Zombi) DNA MER2_type 5 821 -1910 2176 124 0 0 chr12 86227628 86227927 -57558528 + AluSc SINE Alu 1 299 -10 15993 136 30 12 chr12 86227927 86229773 -57556682 + Tigger4(Zombi) DNA MER2_type 821 2731 0 2034 171 24 80 chr12 86229773 86229848 -57556607 + L1MB7 LINE L1 5490 5568 -616 1955 107 7 17 chr12 86229848 86230138 -57556317 + AluSq SINE Alu 5 291 -22 2034 171 24 80 chr12 86230138 86230587 -57555868 + L1MB7 LINE L1 5568 5861 -323 849 210 54 5 chr12 86230759 86230945 -57555510 + AluJb SINE Alu 95 289 -23 1161 152 120 14 chr12 86230945 86231162 -57555293 + MSTA LTR MaLR 189 428 0 1311 299 83 73 chr12 86231162 86231539 -57554916 - ERVL LTR ERVL -1270 4494 4122 1723 161 3 27 chr12 86231539 86231838 -57554617 + AluJo SINE Alu 3 294 -18 1311 299 83 73 chr12 86231838 86232334 -57554121 - ERVL LTR ERVL -1642 4122 3612 526 337 29 16 chr12 86232375 86232658 -57553797 - ERVL LTR ERVL -2106 2890 2672 1317 154 47 0 chr12 86233765 86233979 -57552476 + AluJb SINE Alu 1 224 -88 710 22 0 11 chr12 86233981 86234070 -57552385 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 746 189 52 49 chr12 86234342 86234568 -57551887 - L1MB7 LINE L1 0 6184 5950 230 347 40 24 chr12 86235255 86235379 -57551076 + MIR SINE MIR 4 129 -133 29 28 0 0 chr12 86235970 86236006 -57550449 + AT_rich Low_complexity Low_complexity 1 36 0 275 336 137 0 chr12 86237256 86237402 -57549053 + L1MC/D LINE L1 5450 5615 -2193 383 303 74 34 chr12 86237751 86237812 -57548643 + L1ME LINE L1 5307 5364 -757 737 179 58 0 chr12 86237812 86237985 -57548470 + L1MA7 LINE L1 6109 6291 0 383 303 74 34 chr12 86237985 86238303 -57548152 + L1ME LINE L1 5364 5701 -420 227 79 26 0 chr12 86238474 86238512 -57547943 + (TATG)n Simple_repeat Simple_repeat 2 40 0 307 198 190 43 chr12 86239300 86239416 -57547039 - MLT1H LTR MaLR -17 532 406 464 247 67 62 chr12 86239467 86239645 -57546810 - MLT1H LTR MaLR -249 300 122 721 192 26 16 chr12 86240283 86240476 -57545979 + L1MA8 LINE L1 6095 6289 -2 28 0 0 0 chr12 86240640 86240668 -57545787 + AT_rich Low_complexity Low_complexity 1 28 0 224 296 31 19 chr12 86241024 86241183 -57545272 + A-rich Low_complexity Low_complexity 6 166 0 320 299 34 68 chr12 86241191 86241485 -57544970 + HAL1b LINE L1 109 392 -956 266 276 57 48 chr12 86241670 86241901 -57544554 - L1 LINE L1 -3126 3020 2788 225 222 0 0 chr12 86242003 86242066 -57544389 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 345 303 118 19 chr12 86242093 86242304 -57544151 + L1MC/D LINE L1 4827 5058 -1088 778 272 119 21 chr12 86242311 86242815 -57543640 + L1MC/D LINE L1 5112 5658 -748 1167 292 49 45 chr12 86242820 86243001 -57543454 + MLT1E LTR MaLR 5 184 -409 504 86 21 11 chr12 86243001 86243094 -57543361 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 1167 292 49 45 chr12 86243094 86243357 -57543098 + MLT1E LTR MaLR 184 451 -142 233 130 0 116 chr12 86243485 86243554 -57542901 + Alu SINE Alu 242 302 0 715 304 61 0 chr12 86243637 86243867 -57542588 + MIR SINE MIR 18 261 -1 28 0 0 0 chr12 86244250 86244278 -57542177 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 86244349 86244370 -57542085 + AT_rich Low_complexity Low_complexity 1 21 0 2047 150 32 0 chr12 86244692 86245033 -57541422 + MER65A LTR ERV1 61 412 -33 24 32 0 0 chr12 86245539 86245570 -57540885 + AT_rich Low_complexity Low_complexity 1 31 0 5304 145 8 3 chr12 86245570 86246689 -57539766 - L1PA16 LINE L1 -9 6157 5033 955 148 0 0 chr12 86246689 86246851 -57539604 + L1P LINE L1 4593 4754 -1392 10098 147 7 9 chr12 86246852 86248545 -57537910 - L1PA16 LINE L1 -1121 5025 3337 2165 198 49 27 chr12 86248908 86249459 -57536996 - L1MB7 LINE L1 -87 6087 5562 1955 107 7 17 chr12 86249459 86249749 -57536706 - AluSq SINE Alu -22 291 5 2165 198 49 27 chr12 86249749 86249820 -57536635 - L1MB7 LINE L1 -612 5562 5494 16042 134 38 6 chr12 86249824 86252439 -57534016 - Tigger4(Zombi) DNA MER2_type 0 2731 33 366 211 26 46 chr12 86252448 86252654 -57533801 + C-rich Low_complexity Low_complexity 1 201 0 19501 54 1 1 chr12 86253008 86255510 -57530945 - L1P LINE L1 -1702 4444 1944 494 91 0 0 chr12 86255535 86255601 -57530854 + AluS SINE Alu 1 66 -247 1810 74 4 4 chr12 86255601 86255844 -57530611 - L1P LINE L1 -4407 1739 1497 1490 224 52 9 chr12 86256031 86256595 -57529860 + L1M4 LINE L1 4892 5484 -690 4627 175 29 12 chr12 86256595 86257429 -57529026 + Tigger4(Zombi) DNA MER2_type 1 848 -1883 2524 42 32 0 chr12 86257431 86257739 -57528716 + AluYb8 SINE Alu 1 318 0 543 242 106 0 chr12 86257754 86257915 -57528540 + MLT1J2 LTR MaLR 273 450 0 3304 25 22 0 chr12 86258172 86258573 -57527882 + L1P LINE L1 4069 4478 -1668 2081 93 0 7 chr12 86259065 86259373 -57527082 - AluY SINE Alu 0 310 5 1381 252 38 36 chr12 86259399 86259951 -57526504 - Charlie2 DNA MER1_type -530 2332 1780 1354 248 109 31 chr12 86260016 86260772 -57525683 - Charlie2a DNA MER1_type -1922 940 73 213 178 44 0 chr12 86260914 86260959 -57525496 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 219 316 0 13 chr12 86261323 86261399 -57525056 + A-rich Low_complexity Low_complexity 4 78 0 212 227 31 23 chr12 86261400 86261528 -57524927 + GA-rich Low_complexity Low_complexity 5 133 0 291 283 0 28 chr12 86261551 86261657 -57524798 + GA-rich Low_complexity Low_complexity 3 105 0 2160 110 16 7 chr12 86261848 86262158 -57524297 - AluSp SINE Alu 0 313 1 2228 105 3 0 chr12 86262642 86262937 -57523518 - AluSg SINE Alu -14 296 1 261 83 0 0 chr12 86263062 86263098 -57523357 + (TC)n Simple_repeat Simple_repeat 2 37 0 2014 88 0 0 chr12 86263257 86263517 -57522938 - AluSx SINE Alu -7 305 46 10963 39 0 0 chr12 86263705 86266021 -57520434 + L1PA4 LINE L1 3695 6010 -145 362 236 25 13 chr12 86266280 86266437 -57520018 - Ricksha DNA DNA -25 2829 2671 16586 83 3 4 chr12 86266437 86268775 -57517680 + L1P LINE L1 3 2337 -3809 1458 181 4 139 chr12 86268883 86269458 -57516997 - L1P3 LINE L1 -5624 837 10 395 368 83 33 chr12 86270202 86270731 -57515724 + L2 LINE L2 2697 3266 -47 2240 115 13 54 chr12 86270731 86271122 -57515333 + THE1C LTR MaLR 1 375 0 395 368 83 33 chr12 86271122 86271162 -57515293 + L2 LINE L2 3266 3303 -10 2173 152 61 27 chr12 86271948 86272390 -57514065 + LTR32 LTR ERVL 15 471 0 246 280 80 20 chr12 86274023 86274123 -57512332 - L2 LINE L2 -41 3272 3167 286 312 21 61 chr12 86274717 86274954 -57511501 - L2 LINE L2 -413 2901 2636 274 388 23 31 chr12 86275939 86276068 -57510387 - L2 LINE L2 -8 3264 3137 231 325 38 0 chr12 86276298 86276378 -57510077 + CT-rich Low_complexity Low_complexity 1 83 0 264 313 50 10 chr12 86277213 86277312 -57509143 - L2 LINE L2 -2 3311 3209 605 262 7 7 chr12 86277319 86277460 -57508995 + MIR SINE MIR 10 150 -112 183 412 10 10 chr12 86277715 86277817 -57508638 - L2 LINE L2 -670 2644 2543 532 277 63 59 chr12 86279322 86279560 -57506895 - MIR SINE MIR -15 247 9 257 286 8 60 chr12 86280057 86280190 -57506265 + CT-rich Low_complexity Low_complexity 5 130 0 242 329 0 12 chr12 86280212 86280297 -57506158 + C-rich Low_complexity Low_complexity 4 87 0 285 262 0 0 chr12 86281293 86281354 -57505101 + L2 LINE L2 3252 3312 -1 435 342 0 15 chr12 86281522 86281741 -57504714 + G-rich Low_complexity Low_complexity 1 215 0 7133 54 7 1 chr12 86281814 86283010 -57503445 + L1PA5 LINE L1 4954 6154 0 4423 60 13 1 chr12 86283792 86284877 -57501578 - L1PA6 LINE L1 -325 5829 4738 25 51 0 0 chr12 86284983 86285022 -57501433 + GC_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 86285045 86285070 -57501385 + GC_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 86286413 86286444 -57500011 + AT_rich Low_complexity Low_complexity 1 31 0 643 321 71 8 chr12 86286464 86286704 -57499751 + MIR SINE MIR 6 260 -2 337 220 35 9 chr12 86286839 86286950 -57499505 - MLT1I LTR MaLR -3 406 312 1141 191 29 4 chr12 86287425 86287671 -57498784 - L1PA16 LINE L1 -20 6146 5895 454 358 61 5 chr12 86287726 86288016 -57498439 - L2 LINE L2 -225 3088 2778 306 287 111 37 chr12 86288146 86288254 -57498201 + MIR SINE MIR 117 232 -30 24 32 0 0 chr12 86288617 86288648 -57497807 + GC_rich Low_complexity Low_complexity 1 31 0 273 281 82 41 chr12 86288807 86288953 -57497502 - MIR SINE MIR -52 210 59 645 283 40 0 chr12 86289127 86289325 -57497130 + MER58A DNA MER1_type 3 208 -16 417 200 35 0 chr12 86289349 86289434 -57497021 + MER3 DNA MER1_type 1 88 -121 * 624 162 7 49 chr12 86289397 86289539 -57496916 - MER3 DNA MER1_type -4 205 70 240 197 0 0 chr12 86289530 86289591 -57496864 + MER3 DNA MER1_type 105 165 -44 * 3236 56 5 0 chr12 86289591 86290020 -57496435 + L1PA7 LINE L1 5670 6100 -54 27 29 0 0 chr12 86291779 86291813 -57494642 + AT_rich Low_complexity Low_complexity 1 34 0 711 258 106 27 chr12 86291909 86292428 -57494027 - L1MDa LINE L1 -4652 2035 1313 478 282 201 28 chr12 86293122 86293441 -57493014 - L2 LINE L2 0 3313 2940 2093 104 0 4 chr12 86293767 86294083 -57492372 + AluSg1 SINE Alu 14 328 0 227 83 28 0 chr12 86294342 86294378 -57492077 + MLT1I LTR MaLR 101 137 -272 492 18 0 0 chr12 86294770 86294827 -57491628 + (TA)n Simple_repeat Simple_repeat 1 57 0 1195 190 47 26 chr12 86295386 86295728 -57490727 - L1MDa LINE L1 -5128 1412 1064 663 154 9 0 chr12 86295815 86295925 -57490530 + L1PB4 LINE L1 6044 6154 -2 1828 269 42 44 chr12 86295948 86296776 -57489679 - L1MDa LINE L1 -5520 1020 16 329 260 127 20 chr12 86296776 86296926 -57489529 - MIR SINE MIR -5 257 92 321 353 105 20 chr12 86297550 86297901 -57488554 - L1ME4a LINE L1 -208 5913 5533 801 294 61 46 chr12 86298547 86298942 -57487513 + MLT1I LTR MaLR 9 409 0 577 81 23 0 chr12 86299240 86299327 -57487128 + FAM SINE Alu 94 182 -3 27 62 0 0 chr12 86299749 86299797 -57486658 + AT_rich Low_complexity Low_complexity 1 48 0 197 83 28 0 chr12 86300020 86300056 -57486399 + (CCCCCT)n Simple_repeat Simple_repeat 6 42 0 231 130 81 41 chr12 86300341 86300464 -57485991 + (CCGCG)n Simple_repeat Simple_repeat 1 128 0 * 245 165 25 51 chr12 86300455 86300534 -57485921 + (CGGG)n Simple_repeat Simple_repeat 3 79 0 203 328 0 0 chr12 86301717 86301784 -57484671 + GA-rich Low_complexity Low_complexity 3 69 0 422 277 38 0 chr12 86302155 86302314 -57484141 + L1MC4 LINE L1 7740 7904 -138 31 58 0 0 chr12 86302620 86302672 -57483783 + AT_rich Low_complexity Low_complexity 1 52 0 415 187 0 133 chr12 86303849 86303999 -57482456 + AluJb SINE Alu 1 130 -182 228 68 0 85 chr12 86304079 86304138 -57482317 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 916 194 0 25 chr12 86304138 86304298 -57482157 + AluJb SINE Alu 130 285 -27 1160 269 93 20 chr12 86304334 86305030 -57481425 - L1M4 LINE L1 -1603 4543 3797 24 0 0 0 chr12 86305847 86305871 -57480584 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr12 86306021 86306069 -57480386 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr12 86306103 86306132 -57480323 + AT_rich Low_complexity Low_complexity 1 29 0 1295 184 76 44 chr12 86306330 86306646 -57479809 - MER2 DNA MER2_type 0 345 20 1990 112 3 18 chr12 86307436 86307755 -57478700 - AluSc SINE Alu 0 315 1 556 215 56 0 chr12 86309321 86309428 -57477027 + AluJb SINE Alu 1 113 -199 291 190 0 0 chr12 86309433 86309491 -57476964 + (TG)n Simple_repeat Simple_repeat 1 58 0 433 358 0 26 chr12 86309504 86309766 -57476689 + CT-rich Low_complexity Low_complexity 1 255 0 4405 120 35 36 chr12 86310342 86311136 -57475319 - L1PA16 LINE L1 -4 6162 5370 350 369 32 48 chr12 86311191 86311562 -57474893 + L2 LINE L2 988 1352 -1962 2395 53 0 0 chr12 86311796 86312106 -57474349 + AluY SINE Alu 3 312 0 246 339 104 56 chr12 86312239 86312682 -57473773 + L2 LINE L2 1887 2350 -964 21 0 0 0 chr12 86314838 86314859 -57471596 + AT_rich Low_complexity Low_complexity 1 21 0 429 329 70 9 chr12 86316257 86316470 -57469985 - Charlie8 DNA MER1_type -2191 226 1 17276 63 1 1 chr12 86316489 86319517 -57466938 - L1PA6 LINE L1 -5 6149 3122 768 301 69 64 chr12 86320197 86320747 -57465708 + L2 LINE L2 2758 3313 0 308 336 30 0 chr12 86321026 86321157 -57465298 + MIR SINE MIR 20 154 -108 314 335 20 46 chr12 86321273 86321425 -57465030 + L2 LINE L2 3122 3269 -3 799 117 0 51 chr12 86322000 86322137 -57464318 + L1PB3 LINE L1 5660 5789 -365 327 62 113 19 chr12 86322137 86322297 -57464158 + (TA)n Simple_repeat Simple_repeat 1 175 0 1793 157 48 3 chr12 86322307 86322623 -57463832 + L1PB3 LINE L1 5762 6088 -66 23 54 0 0 chr12 86322626 86322663 -57463792 + AT_rich Low_complexity Low_complexity 1 37 0 267 239 0 15 chr12 86322829 86322896 -57463559 - L2 LINE L2 0 3313 3248 284 314 59 8 chr12 86322976 86323094 -57463361 + MIR SINE MIR 139 262 0 852 249 37 5 chr12 86323111 86323328 -57463127 - MER58A DNA MER1_type 0 224 1 322 335 58 40 chr12 86323332 86323556 -57462899 - L2 LINE L2 -189 3083 2856 333 0 0 0 chr12 86324180 86324217 -57462238 + (CA)n Simple_repeat Simple_repeat 1 37 0 191 287 139 20 chr12 86324766 86324867 -57461588 + MIR SINE MIR 15 127 -135 363 356 42 0 chr12 86325111 86325229 -57461226 - L2 LINE L2 -9 3263 3141 456 192 123 0 chr12 86325402 86325532 -57460923 - MER69 DNA AcHobo 0 2526 2381 44 0 0 0 chr12 86326457 86326501 -57459954 + AT_rich Low_complexity Low_complexity 1 44 0 2379 59 3 0 chr12 86326501 86326790 -57459665 - AluY SINE Alu -21 290 1 362 337 112 6 chr12 86326796 86326965 -57459490 - MIR SINE MIR -74 188 2 593 251 74 44 chr12 86327714 86327917 -57458538 - MIR SINE MIR -13 249 41 237 184 20 0 chr12 86330232 86330281 -57456174 - Alu SINE Alu -29 274 225 40 21 0 0 chr12 86330440 86330487 -57455968 + AT_rich Low_complexity Low_complexity 1 47 0 202 240 40 0 chr12 86331125 86331175 -57455280 + L2 LINE L2 3254 3305 -8 2429 52 6 52 chr12 86331748 86332074 -57454381 - AluY SINE Alu 0 311 1 204 344 32 48 chr12 86332559 86332745 -57453710 - L2 LINE L2 -927 2387 2205 233 238 143 0 chr12 86334226 86334289 -57452166 - L2 LINE L2 0 3313 3242 225 65 0 0 chr12 86334725 86334756 -57451699 + (CA)n Simple_repeat Simple_repeat 2 32 0 287 266 8 0 chr12 86334758 86334882 -57451573 + (TA)n Simple_repeat Simple_repeat 2 126 0 1959 104 3 60 chr12 86335638 86335954 -57450501 + AluY SINE Alu 1 298 -13 21 57 0 0 chr12 86338823 86338858 -57447597 + AT_rich Low_complexity Low_complexity 1 35 0 870 319 177 32 chr12 86339363 86339984 -57446471 + L3 LINE CR1 459 1199 -378 2228 117 0 0 chr12 86339984 86340282 -57446173 + AluSx SINE Alu 1 298 -14 870 319 177 32 chr12 86340282 86340378 -57446077 + L3 LINE CR1 1199 1280 -297 24 32 0 0 chr12 86340971 86341002 -57445453 + AT_rich Low_complexity Low_complexity 1 31 0 310 320 63 29 chr12 86341693 86341868 -57444587 + L2 LINE L2 2910 3090 -182 205 245 0 19 chr12 86341976 86342029 -57444426 + L2 LINE L2 3258 3309 -4 372 354 91 45 chr12 86342038 86342546 -57443909 + L2 LINE L2 2036 2566 -748 2898 267 42 76 chr12 86342756 86343044 -57443411 + L1 LINE L1 2627 2923 -3223 350 21 21 0 chr12 86343044 86343091 -57443364 + (CA)n Simple_repeat Simple_repeat 2 49 0 2898 267 42 76 chr12 86343091 86344387 -57442068 + L1 LINE L1 2923 4262 -1884 2323 101 0 0 chr12 86344387 86344685 -57441770 + AluSg SINE Alu 1 298 -12 2898 267 42 76 chr12 86344685 86344792 -57441663 + L1 LINE L1 4262 4259 -1887 351 0 0 0 chr12 86344792 86344831 -57441624 + (CA)n Simple_repeat Simple_repeat 2 40 0 2898 267 42 76 chr12 86344831 86344918 -57441537 + L1 LINE L1 4258 4346 -1800 867 160 99 0 chr12 86344926 86345107 -57441348 + L1MD1 LINE L1 6019 6217 -25 398 313 80 0 chr12 86345294 86345495 -57440960 + L2 LINE L2 1825 2041 -1273 344 302 132 59 chr12 86345487 86345874 -57440581 + L2 LINE L2 2896 3310 -3 * 425 241 51 0 chr12 86346087 86346224 -57440231 + L1M4 LINE L1 2992 3135 -3011 269 265 35 76 chr12 86347309 86347456 -57438999 + MIR SINE MIR 11 152 -56 376 324 124 13 chr12 86347652 86347877 -57438578 + MIR SINE MIR 12 261 -1 6726 179 106 42 chr12 86348470 86349916 -57436539 - MER52A LTR ERV1 0 1755 217 22 0 0 0 chr12 86350082 86350104 -57436351 + AT_rich Low_complexity Low_complexity 1 22 0 6541 154 41 5 chr12 86350107 86351295 -57435160 + Tigger3b DNA MER2_type 1 1231 0 2286 87 3 7 chr12 86352224 86352523 -57433932 + AluY SINE Alu 1 298 -13 496 277 99 14 chr12 86352746 86352959 -57433496 - MIR SINE MIR 0 262 32 195 290 47 118 chr12 86353105 86353384 -57433071 - L2 LINE L2 -828 2486 2228 191 310 123 53 chr12 86353391 86353562 -57432893 - L2 LINE L2 -1257 2057 1875 435 125 28 0 chr12 86354226 86354298 -57432157 - MSTD LTR MaLR 0 396 323 234 200 0 50 chr12 86354304 86354364 -57432091 - MSTD LTR MaLR -52 344 288 27 0 0 0 chr12 86408385 86408412 -57378043 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr12 86408756 86408790 -57377665 + AT_rich Low_complexity Low_complexity 1 34 0 1615 141 12 0 chr12 86410709 86410951 -57375504 - AluSx SINE Alu -22 290 46 22 0 0 0 chr12 86413053 86413075 -57373380 + AT_rich Low_complexity Low_complexity 1 22 0 2341 81 10 3 chr12 86414490 86414797 -57371658 + AluSp SINE Alu 1 309 -4 181 194 45 104 chr12 86416856 86416923 -57369532 + MER5B DNA MER1_type 3 65 -113 319 307 35 9 chr12 86417097 86417211 -57369244 + L3 LINE CR1 1458 1574 -3 2804 7 0 0 chr12 86417607 86417915 -57368540 - AluYa5 SINE Alu -2 309 2 1044 264 81 80 chr12 86419047 86419394 -57367061 - L1ME3A LINE L1 -116 6054 5709 1089 91 6 12 chr12 86419394 86419559 -57366896 + L1PB1 LINE L1 5988 6151 0 1044 264 81 80 chr12 86419559 86419814 -57366641 - L1ME3A LINE L1 -461 5709 5448 1968 220 49 2 chr12 86419814 86420260 -57366195 + MLT1C LTR MaLR 1 467 0 1044 264 81 80 chr12 86420260 86420285 -57366170 - L1ME3A LINE L1 -722 5448 5425 479 263 180 28 chr12 86420320 86420744 -57365711 - L1MEc LINE L1 -3636 2579 2064 2032 132 7 0 chr12 86420744 86421047 -57365408 - AluSq SINE Alu -8 305 1 479 263 180 28 chr12 86421047 86421278 -57365177 - L1MEc LINE L1 -4151 2064 1869 233 200 161 46 chr12 86421407 86421537 -57364918 - L1M1 LINE L1 -4607 2958 2814 410 272 139 60 chr12 86421637 86422130 -57364325 - L1MEc LINE L1 -4869 1336 900 22 56 0 0 chr12 86422422 86422458 -57363997 + AT_rich Low_complexity Low_complexity 1 36 0 2478 58 0 16 chr12 86425402 86425714 -57360741 - AluY SINE Alu -4 307 1 1522 173 25 0 chr12 86425773 86426057 -57360398 + L1PB4 LINE L1 5866 6156 0 26 0 0 0 chr12 86427046 86427072 -57359383 + AT_rich Low_complexity Low_complexity 1 26 0 2189 102 3 0 chr12 86427891 86428186 -57358269 + AluSg SINE Alu 1 296 -14 1940 163 23 43 chr12 86428613 86429011 -57357444 + MLT1B LTR MaLR 1 390 0 394 334 211 30 chr12 86429433 86430140 -57356315 - L3 LINE CR1 -124 1453 619 188 146 0 21 chr12 86433121 86433169 -57353286 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 23 33 0 0 chr12 86434553 86434583 -57351872 + AT_rich Low_complexity Low_complexity 1 30 0 203 86 0 29 chr12 86435127 86435153 -57351302 + (TA)n Simple_repeat Simple_repeat 1 27 -7 5977 167 67 10 chr12 86435153 86436318 -57350137 + Tigger3b DNA MER2_type 1 1231 0 203 86 0 29 chr12 86436318 86436326 -57350129 + (TA)n Simple_repeat Simple_repeat 27 34 0 382 187 13 13 chr12 86437884 86437959 -57348496 + MER96 DNA MER1_type? 1 75 -100 698 250 34 11 chr12 86438668 86438844 -57347611 + MIR SINE MIR 83 262 0 27 29 0 0 chr12 86439693 86439727 -57346728 + AT_rich Low_complexity Low_complexity 1 34 0 250 251 77 56 chr12 86441021 86441399 -57345056 + L1ME4a LINE L1 5734 6119 -2 206 381 97 45 chr12 86441687 86442039 -57344416 - L2 LINE L2 -16 3256 2887 2472 165 0 31 chr12 86442477 86442925 -57343530 + Tigger2a DNA MER2_type 1 434 0 25 65 0 0 chr12 86442985 86443031 -57343424 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr12 86443346 86443381 -57343074 + AT_rich Low_complexity Low_complexity 1 35 0 4626 161 11 7 chr12 86443638 86444455 -57342000 + L1PB4 LINE L1 5351 6298 -1 1056 85 0 0 chr12 86444533 86444686 -57341769 + (GGAA)n Simple_repeat Simple_repeat 4 156 0 384 356 137 5 chr12 86445207 86445426 -57341029 - MIR SINE MIR 0 262 15 1841 155 7 7 chr12 86445848 86446158 -57340297 + AluSx SINE Alu 3 312 0 1926 129 3 42 chr12 86446161 86446471 -57339984 + AluSq SINE Alu 1 298 -15 338 287 145 53 chr12 86446834 86446985 -57339470 + MIR3 SINE MIR 2 167 -41 1517 255 104 38 chr12 86447017 86447487 -57338968 + MLT1F1 LTR MaLR 67 567 0 23 33 0 0 chr12 86449572 86449602 -57336853 + AT_rich Low_complexity Low_complexity 1 30 0 270 56 0 0 chr12 86451113 86451149 -57335306 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 896 242 178 22 chr12 86451667 86452217 -57334238 + L2 LINE L2 2685 3306 -7 26 0 0 0 chr12 86452902 86452928 -57333527 + AT_rich Low_complexity Low_complexity 1 26 0 770 306 70 62 chr12 86454465 86455188 -57331267 - L2 LINE L2 -31 3282 2537 195 250 0 0 chr12 86455191 86455235 -57331220 + L2 LINE L2 3229 3272 0 349 312 149 0 chr12 86455252 86455406 -57331049 + MIR SINE MIR 73 249 -13 534 373 29 4 chr12 86456391 86456632 -57329823 + MIR SINE MIR 5 251 -11 212 0 36 0 chr12 86456647 86456675 -57329780 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1915 141 10 3 chr12 86456680 86456979 -57329476 - AluSx SINE Alu -11 301 1 282 360 102 13 chr12 86457709 86458162 -57328293 + L2 LINE L2 2568 3087 -185 26 50 0 0 chr12 86458210 86458250 -57328205 + AT_rich Low_complexity Low_complexity 1 40 0 692 332 70 4 chr12 86458405 86458646 -57327809 - MIR SINE MIR 0 262 6 245 378 31 0 chr12 86460317 86460415 -57326040 - MIR SINE MIR -142 120 20 27 0 0 0 chr12 86460983 86461010 -57325445 + AT_rich Low_complexity Low_complexity 1 27 0 2566 58 0 0 chr12 86461589 86461898 -57324557 + AluY SINE Alu 1 309 -2 2171 278 110 33 chr12 86462218 86464090 -57322365 - L1ME LINE L1 -425 6139 4123 1335 234 62 6 chr12 86464089 86464426 -57322029 - L1MC1 LINE L1 0 6333 5978 * 528 268 66 33 chr12 86464439 86464682 -57321773 - L1ME LINE L1 -2420 4120 3870 230 274 94 17 chr12 86464696 86464813 -57321642 - L1ME LINE L1 -5039 1682 1557 351 280 81 11 chr12 86464853 86465030 -57321425 - L1MDb LINE L1 -5106 1434 1253 2131 117 3 3 chr12 86465175 86465484 -57320971 + AluSg SINE Alu 1 309 -1 223 197 0 70 chr12 86466031 86466102 -57320353 + GA-rich Low_complexity Low_complexity 1 66 0 576 194 8 22 chr12 86466802 86466936 -57319519 + MER3 DNA MER1_type 73 204 -5 336 203 16 0 chr12 86466887 86466951 -57319504 - MER3 DNA MER1_type -108 101 37 * 26 74 0 0 chr12 86467318 86467372 -57319083 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr12 86468498 86468529 -57317926 + AT_rich Low_complexity Low_complexity 1 31 0 206 317 24 0 chr12 86468671 86468753 -57317702 + CT-rich Low_complexity Low_complexity 3 86 0 21 0 0 0 chr12 86469241 86469262 -57317193 + AT_rich Low_complexity Low_complexity 1 21 0 1135 171 60 75 chr12 86469308 86469640 -57316815 + MER33 DNA MER1_type 1 317 -7 1558 210 123 5 chr12 86469649 86470030 -57316425 - MSTB LTR MaLR 0 426 1 180 283 109 0 chr12 86471337 86471383 -57315072 - L2 LINE L2 -86 3186 3136 1859 126 35 35 chr12 86473685 86473995 -57312460 + AluSx SINE Alu 3 312 0 1955 103 7 4 chr12 86475073 86475346 -57311109 + AluY SINE Alu 1 274 -37 252 77 0 0 chr12 86475524 86475563 -57310892 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2590 211 18 41 chr12 86476124 86476689 -57309766 - MLT2B3 LTR ERVL -2 552 1 597 257 0 0 chr12 86477518 86477697 -57308758 + CT-rich Low_complexity Low_complexity 2 180 0 327 320 73 62 chr12 86480336 86480608 -57305847 - L3b LINE CR1 -31 1552 1278 283 267 30 30 chr12 86480722 86480823 -57305632 + MIR SINE MIR 162 262 0 467 210 85 114 chr12 86482609 86482785 -57303670 - MLT1H1 LTR MaLR 0 555 385 4186 118 8 0 chr12 86482794 86483424 -57303031 - MER41B LTR ERV1 0 635 1 5215 103 22 6 chr12 86483424 86484200 -57302255 - MER41B-int LTR ERV1 0 5946 5159 23 0 0 0 chr12 86484200 86484223 -57302232 + AT_rich Low_complexity Low_complexity 1 23 0 1297 174 40 51 chr12 86484235 86484511 -57301944 - AluJb SINE Alu -26 286 14 519 106 106 11 chr12 86484531 86484625 -57301830 - L1MA2 LINE L1 0 6304 6202 21 0 0 0 chr12 86484963 86484984 -57301471 + AT_rich Low_complexity Low_complexity 1 21 0 1380 298 38 42 chr12 86484999 86485587 -57300868 + L2 LINE L2 2722 3311 -2 202 272 82 89 chr12 86485769 86485927 -57300528 + MIR SINE MIR 79 235 -27 295 396 0 0 chr12 86486982 86487073 -57299382 + polypurine Low_complexity Low_complexity 5 95 0 257 253 35 29 chr12 86487073 86487247 -57299208 + GA-rich Low_complexity Low_complexity 1 175 0 256 313 30 0 chr12 86487247 86487314 -57299141 + polypurine Low_complexity Low_complexity 4 72 0 307 277 23 17 chr12 86487315 86487492 -57298963 + GA-rich Low_complexity Low_complexity 1 178 0 244 91 0 0 chr12 86487505 86487538 -57298917 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 733 169 6 6 chr12 86487550 86487716 -57298739 + CT-rich Low_complexity Low_complexity 4 169 0 954 116 6 17 chr12 86487717 86487898 -57298557 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1964 129 0 0 chr12 86487899 86488178 -57298277 - AluSx SINE Alu -33 279 1 34 55 0 0 chr12 86489968 86490023 -57296432 + AT_rich Low_complexity Low_complexity 1 55 0 345 82 0 0 chr12 86490043 86490092 -57296363 - L1PA3 LINE L1 -2 6153 6105 913 50 0 0 chr12 86490092 86490211 -57296244 + L1PA4 LINE L1 5932 6050 -105 312 109 0 0 chr12 86490223 86490269 -57296186 - MADE1 DNA Mariner -34 46 1 24 0 0 0 chr12 86490598 86490622 -57295833 + AT_rich Low_complexity Low_complexity 1 24 0 201 250 88 50 chr12 86491185 86491265 -57295190 - MIR SINE MIR -107 155 73 2041 117 16 16 chr12 86491416 86491725 -57294730 + AluSx SINE Alu 3 311 -1 228 312 94 12 chr12 86491871 86492041 -57294414 + MIR SINE MIR 77 260 -2 394 266 44 18 chr12 86492080 86492193 -57294262 - MIR3 SINE MIR -48 160 45 25 65 0 0 chr12 86492756 86492802 -57293653 + AT_rich Low_complexity Low_complexity 1 46 0 229 273 227 40 chr12 86492863 86493013 -57293442 - MIR SINE MIR -4 258 81 1355 182 23 0 chr12 86494306 86494564 -57291891 - L1PA16 LINE L1 -16 6150 5887 249 273 43 50 chr12 86494723 86494862 -57291593 - L1ME LINE L1 -394 5727 5590 181 341 12 35 chr12 86497981 86498066 -57288389 - L2 LINE L2 -204 3068 2986 180 231 0 0 chr12 86498377 86498429 -57288026 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 249 33 0 0 chr12 86498429 86498459 -57287996 + (TG)n Simple_repeat Simple_repeat 1 30 0 3135 163 13 6 chr12 86498465 86499010 -57287445 + MER44D DNA MER2_type 1 604 -1 228 86 0 0 chr12 86499011 86499046 -57287409 + (TG)n Simple_repeat Simple_repeat 2 36 0 211 395 0 0 chr12 86499609 86499685 -57286770 + L2 LINE L2 3196 3271 -1 305 353 105 38 chr12 86499849 86500459 -57285996 + L2 LINE L2 1737 2387 -927 182 277 0 77 chr12 86500583 86500648 -57285807 + L2 LINE L2 2445 2504 -810 322 143 0 0 chr12 86500775 86500824 -57285631 - MLT2D LTR ERVL 0 520 472 243 146 0 0 chr12 86500824 86500865 -57285590 + (CA)n Simple_repeat Simple_repeat 1 41 0 1998 162 61 10 chr12 86500865 86501227 -57285228 - MLT2D LTR ERVL -40 424 1 225 0 0 0 chr12 86501253 86501278 -57285177 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 303 63 72 chr12 86502817 86503038 -57283417 + Charlie8 DNA MER1_type 167 385 -2032 218 195 0 0 chr12 86504111 86504152 -57282303 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 288 368 148 41 chr12 86505007 86505425 -57281030 - L3b LINE CR1 -10 1573 1111 440 302 17 9 chr12 86506182 86506298 -57280157 - MIR SINE MIR -144 118 2 395 317 28 0 chr12 86506336 86506481 -57279974 - MIR SINE MIR -15 247 99 4476 245 32 50 chr12 86507721 86510135 -57276320 - L1ME1 LINE L1 -29 6397 4026 25 31 0 0 chr12 86510140 86510172 -57276283 + AT_rich Low_complexity Low_complexity 1 32 0 404 217 71 99 chr12 86510333 86510696 -57275759 - L1ME1 LINE L1 -3786 2620 2321 1604 263 60 17 chr12 86510815 86511365 -57275090 + LTR68 LTR ERV1 103 740 0 552 259 31 100 chr12 86511385 86511674 -57274781 - L1ME1 LINE L1 -5348 1061 793 4673 225 33 48 chr12 86511681 86513270 -57273185 - L1MCa LINE L1 -1905 4521 2956 313 185 22 11 chr12 86513276 86513368 -57273087 + L1MCa LINE L1 1825 1917 -4509 2472 101 3 0 chr12 86513368 86513695 -57272760 - THE1B LTR MaLR 0 364 37 719 163 155 29 chr12 86513830 86514069 -57272386 + L1MCa LINE L1 1914 2182 -4244 1844 222 63 6 chr12 86514092 86514882 -57271573 - L1MCa LINE L1 -3474 2952 2117 7413 40 0 2 chr12 86514882 86516198 -57270257 - L1PA3 LINE L1 0 6155 4840 13042 37 0 0 chr12 86516198 86517782 -57268673 + L1PA3 LINE L1 3283 4866 -1280 6229 184 192 37 chr12 86517780 86518956 -57267499 - L1MCa LINE L1 -4298 2128 1136 * 252 59 0 0 chr12 86518956 86518990 -57267465 + (TG)n Simple_repeat Simple_repeat 1 34 0 6229 184 192 37 chr12 86518990 86519235 -57267220 - L1MCa LINE L1 -5290 1136 930 2383 63 0 3 chr12 86519235 86519534 -57266921 + AluY SINE Alu 6 303 -8 6229 184 192 37 chr12 86519534 86519936 -57266519 - L1MCa LINE L1 -5496 930 20 263 309 85 12 chr12 86520344 86520509 -57265946 - L1MDa LINE L1 -6128 412 236 841 150 36 0 chr12 86520856 86520996 -57265459 + L1PA13 LINE L1 6015 6159 -4 4592 140 21 11 chr12 86522110 86522902 -57263553 + L1MA4A LINE L1 5496 6295 -8 1992 197 46 23 chr12 86525160 86525597 -57260858 + L1MC1 LINE L1 5874 6320 -13 1605 175 0 38 chr12 86525600 86525918 -57260537 + AluJo SINE Alu 1 307 0 484 298 153 52 chr12 86526037 86526480 -57259975 + L2 LINE L2 2826 3313 0 225 185 19 0 chr12 86527265 86527319 -57259136 - L1MC4 LINE L1 -1378 6664 6610 1431 214 0 26 chr12 86527968 86528277 -57258178 - AluJo SINE Alu -8 304 4 1585 123 97 4 chr12 86529600 86529869 -57256586 + AluSx SINE Alu 13 306 -6 209 235 59 0 chr12 86529877 86529928 -57256527 - MIR3 SINE MIR -27 181 128 370 283 80 11 chr12 86530157 86530359 -57256096 - Charlie8 DNA MER1_type -2136 281 67 21 0 0 0 chr12 86533188 86533209 -57253246 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 86533871 86533908 -57252547 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 86534812 86534839 -57251616 + AT_rich Low_complexity Low_complexity 1 27 0 388 391 110 7 chr12 86535232 86535687 -57250768 - L2 LINE L2 -2122 1192 691 29 47 0 0 chr12 86536330 86536373 -57250082 + AT_rich Low_complexity Low_complexity 1 43 0 313 242 83 38 chr12 86536923 86537055 -57249400 + MIR SINE MIR 124 261 -1 284 386 81 9 chr12 86537191 86537414 -57249041 - L2 LINE L2 -443 2871 2633 466 358 176 27 chr12 86537784 86538597 -57247858 - L3 LINE CR1 -3 1574 641 181 214 71 0 chr12 86540017 86540059 -57246396 + L2 LINE L2 3269 3313 0 297 267 121 58 chr12 86541023 86541229 -57245226 + HAL1 LINE L1 1451 1669 -838 23 0 0 0 chr12 86541320 86541343 -57245112 + AT_rich Low_complexity Low_complexity 1 23 0 1186 202 9 17 chr12 86541849 86542082 -57244373 - AluJo SINE Alu -71 241 11 36 40 0 0 chr12 86543385 86543435 -57243020 + AT_rich Low_complexity Low_complexity 1 50 0 23 78 0 0 chr12 86543598 86543649 -57242806 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 86544622 86544643 -57241812 + AT_rich Low_complexity Low_complexity 1 21 0 21 67 0 40 chr12 86547653 86547728 -57238727 + AT_rich Low_complexity Low_complexity 1 72 0 1243 191 54 0 chr12 86548269 86548547 -57237908 + MER33 DNA MER1_type 10 302 -22 233 208 208 28 chr12 86548652 86548724 -57237731 + MER20B DNA MER1_type 56 140 -643 1716 173 40 0 chr12 86548759 86549059 -57237396 - AluJo SINE Alu 0 312 1 2327 174 4 35 chr12 86550036 86550495 -57235960 + MER65A LTR ERV1 1 445 0 1371 186 72 27 chr12 86551064 86551397 -57235058 + MER7A DNA MER2_type 1 346 0 213 315 185 8 chr12 86552719 86552849 -57233606 + MIR3 SINE MIR 29 181 -27 1054 350 147 13 chr12 86552980 86553965 -57232490 - L3 LINE CR1 -1 1576 460 2087 103 4 4 chr12 86555416 86555697 -57230758 + AluSx SINE Alu 1 281 -31 315 0 0 0 chr12 86555700 86555735 -57230720 + (CAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr12 86556192 86556216 -57230239 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 86557561 86557592 -57228863 + AT_rich Low_complexity Low_complexity 1 31 0 182 245 0 20 chr12 86558857 86558906 -57227549 + MIR SINE MIR 215 262 0 198 156 0 0 chr12 86559023 86559068 -57227387 + A-rich Low_complexity Low_complexity 5 49 0 1206 161 60 0 chr12 86561423 86561640 -57224815 - MER30 DNA MER1_type 0 230 1 589 15 0 0 chr12 86562832 86562934 -57223521 + L1PA3 LINE L1 6070 6171 0 201 357 80 9 chr12 86562972 86563084 -57223371 + MIR SINE MIR 32 151 -111 1798 238 97 18 chr12 86563764 86564269 -57222186 + MER74A LTR ERVL 14 558 0 56 48 0 0 chr12 86564275 86564359 -57222096 + AT_rich Low_complexity Low_complexity 1 84 0 186 276 134 16 chr12 86566245 86566372 -57220083 + MIR SINE MIR 61 202 -60 63 44 0 0 chr12 86566408 86566499 -57219956 + AT_rich Low_complexity Low_complexity 1 91 0 1381 196 0 72 chr12 86566883 86567204 -57219251 - AluJo SINE Alu -12 300 3 444 351 25 10 chr12 86567231 86567433 -57219022 + MIR SINE MIR 53 257 -5 180 440 0 0 chr12 86568177 86568252 -57218203 - L3 LINE CR1 -35 1542 1468 2184 78 0 0 chr12 86568409 86568680 -57217775 + AluSg SINE Alu 1 271 -39 26 0 0 0 chr12 86568680 86568706 -57217749 + AT_rich Low_complexity Low_complexity 1 26 0 322 310 17 26 chr12 86570249 86570365 -57216090 - L2 LINE L2 -14 3299 3185 207 336 124 39 chr12 86570542 86570801 -57215654 - L2 LINE L2 -465 2849 2569 21 0 0 0 chr12 86571031 86571052 -57215403 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr12 86571902 86571949 -57214506 + (TA)n Simple_repeat Simple_repeat 2 48 0 5759 72 6 14 chr12 86572588 86573424 -57213031 + L1PA5 LINE L1 5326 6154 0 1391 192 17 43 chr12 86574300 86574602 -57211853 + AluJb SINE Alu 1 294 -18 360 272 18 9 chr12 86574762 86574876 -57211579 + MLT1A2 LTR MaLR 1 115 -259 455 267 0 0 chr12 86575397 86575498 -57210957 - MER5A DNA MER1_type -83 106 6 13580 139 25 35 chr12 86576275 86577080 -57209375 - Tigger1 DNA MER2_type 0 2418 1607 1961 141 3 0 chr12 86577080 86577370 -57209085 - AluSx SINE Alu -18 294 4 13580 139 25 35 chr12 86577370 86578816 -57207639 - Tigger1 DNA MER2_type -811 1607 189 2066 148 0 0 chr12 86578816 86579114 -57207341 + AluJb SINE Alu 6 303 -9 13580 139 25 35 chr12 86579114 86579302 -57207153 - Tigger1 DNA MER2_type -2229 189 1 198 139 111 0 chr12 86579686 86579722 -57206733 - L2 LINE L2 0 3313 3274 277 309 62 68 chr12 86580122 86580284 -57206171 + MIR SINE MIR 2 162 -100 305 282 28 0 chr12 86580496 86580567 -57205888 - L2 LINE L2 -508 2806 2734 954 190 5 60 chr12 86580575 86580800 -57205655 - AluJo SINE Alu 0 306 93 487 282 158 39 chr12 86580801 86581156 -57205299 - L2 LINE L2 -572 2742 2346 209 312 108 21 chr12 86582883 86582976 -57203479 + L2 LINE L2 3199 3299 -14 209 384 76 0 chr12 86583219 86583391 -57203064 + L2 LINE L2 2778 2962 -352 406 329 7 7 chr12 86585023 86585160 -57201295 - L2 LINE L2 0 3313 3177 567 40 0 0 chr12 86585341 86585415 -57201040 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 239 241 0 0 chr12 86585507 86585561 -57200894 + T-rich Low_complexity Low_complexity 2 55 0 24 0 0 0 chr12 86585792 86585816 -57200639 + AT_rich Low_complexity Low_complexity 1 24 0 276 226 0 0 chr12 86586578 86586631 -57199824 - L2 LINE L2 -526 2788 2736 180 97 0 0 chr12 86586641 86586672 -57199783 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 246 135 0 0 chr12 86586675 86586712 -57199743 - Alu SINE Alu -21 281 245 482 322 134 39 chr12 86587242 86587732 -57198723 - L2 LINE L2 -1 3271 2734 954 190 5 60 chr12 86587740 86587965 -57198490 - AluJo SINE Alu 0 306 93 1084 273 132 50 chr12 86587966 86588586 -57197869 - L2 LINE L2 -572 2742 2072 534 294 98 23 chr12 86588588 86588853 -57197602 - L2 LINE L2 -3005 309 25 198 423 90 5 chr12 86588954 86589155 -57197300 + L2 LINE L2 2873 3090 -182 522 305 195 38 chr12 86589324 86590012 -57196443 + L1M2 LINE L1 530 1407 -5442 517 144 8 38 chr12 86590118 86590250 -57196205 + CT-rich Low_complexity Low_complexity 2 129 0 352 227 73 73 chr12 86590874 86591024 -57195431 + L1ME3A LINE L1 5889 6038 -132 30 59 0 0 chr12 86591315 86591366 -57195089 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr12 86591889 86591924 -57194531 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr12 86594017 86594053 -57192402 + AT_rich Low_complexity Low_complexity 1 36 0 76 0 0 0 chr12 86595368 86595444 -57191011 + AT_rich Low_complexity Low_complexity 1 76 0 414 53 0 0 chr12 86596018 86596075 -57190380 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 35 0 0 chr12 86596852 86596881 -57189574 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 86597194 86597222 -57189233 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 86597536 86597571 -57188884 + AT_rich Low_complexity Low_complexity 1 35 0 1043 221 19 0 chr12 86599280 86599488 -57186967 - MER58A DNA MER1_type -4 220 9 479 296 79 16 chr12 86599496 86599685 -57186770 + MIR SINE MIR 31 231 -31 31 26 0 0 chr12 86601340 86601378 -57185077 + AT_rich Low_complexity Low_complexity 1 38 0 2129 109 0 22 chr12 86601388 86601699 -57184756 + AluSx SINE Alu 1 304 -8 1383 219 69 35 chr12 86601975 86602408 -57184047 + MLT1C LTR MaLR 20 467 0 339 104 0 0 chr12 86603956 86604004 -57182451 - MADE1 DNA Mariner 0 80 33 1504 202 11 3 chr12 86604219 86604501 -57181954 + AluJo SINE Alu 12 295 -17 359 289 43 43 chr12 86604776 86604987 -57181468 + MIR SINE MIR 10 220 -42 369 0 0 0 chr12 86605087 86605128 -57181327 + (TG)n Simple_repeat Simple_repeat 2 42 0 248 247 49 12 chr12 86605203 86605284 -57181171 + MER102a DNA MER1_type 245 328 -2 243 61 0 0 chr12 86605916 86605949 -57180506 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2123 306 132 18 chr12 86606010 86607332 -57179123 - L2 LINE L2 0 3313 1787 24 53 0 0 chr12 86608410 86608448 -57178007 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr12 86608674 86608712 -57177743 + AT_rich Low_complexity Low_complexity 1 38 0 5377 146 40 28 chr12 86609098 86610117 -57176338 + L1MA7 LINE L1 5260 6291 0 1378 203 4 11 chr12 86610117 86610388 -57176067 + AluJo SINE Alu 1 269 -43 423 0 0 0 chr12 86610399 86610446 -57176009 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1408 214 7 0 chr12 86610465 86610741 -57175714 + AluJb SINE Alu 1 278 -34 252 86 0 0 chr12 86610744 86610779 -57175676 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1093 232 32 38 chr12 86612430 86612775 -57173680 + L1ME1 LINE L1 5807 6149 -17 578 243 22 1 chr12 86613099 86613258 -57173197 - L1MB8 LINE L1 -176 5992 5830 201 181 14 28 chr12 86613258 86613330 -57173125 + (TA)n Simple_repeat Simple_repeat 1 71 0 3909 215 32 10 chr12 86613907 86615004 -57171451 - L1MB7 LINE L1 -10 6174 5056 24 0 0 0 chr12 86615072 86615096 -57171359 + AT_rich Low_complexity Low_complexity 1 24 0 182 191 21 21 chr12 86615096 86615143 -57171312 - L2 LINE L2 0 3313 3267 191 345 82 64 chr12 86615326 86615546 -57170909 - L2 LINE L2 -242 3030 2807 502 200 18 0 chr12 86615756 86615866 -57170589 - MER53 DNA DNA 0 189 78 1197 305 179 14 chr12 86615931 86616619 -57169836 - L2 LINE L2 -349 2965 2165 1133 319 42 15 chr12 86616807 86617215 -57169240 + L2 LINE L2 2279 2697 -617 199 50 75 0 chr12 86618263 86618303 -57168152 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr12 86618534 86618563 -57167892 + AT_rich Low_complexity Low_complexity 1 29 0 2269 54 34 0 chr12 86618649 86618947 -57167508 + L1PA8 LINE L1 5864 6171 -1 344 322 89 6 chr12 86619224 86619549 -57166906 + L1 LINE L1 4258 4605 -1541 968 205 127 19 chr12 86619550 86619941 -57166514 + LTR48 LTR ERV1 1 461 -326 692 251 20 20 chr12 86620004 86620199 -57166256 + LTR48 LTR ERV1 593 787 0 459 259 293 26 chr12 86620305 86620764 -57165691 - L2 LINE L2 -2 3311 2688 238 211 0 0 chr12 86620764 86620821 -57165634 + L1MA4 LINE L1 6236 6292 -8 1810 255 85 104 chr12 86620841 86621396 -57165059 - L2 LINE L2 -612 2702 2105 238 188 266 0 chr12 86621396 86621460 -57164995 + LTR48 LTR ERV1 289 369 -418 1810 255 85 104 chr12 86621460 86621734 -57164721 - L2 LINE L2 -1209 2105 1827 218 275 113 63 chr12 86621743 86621808 -57164647 - L2 LINE L2 -1588 1726 1666 3083 139 45 10 chr12 86621808 86622317 -57164138 + MER1A DNA MER1_type 1 527 0 218 275 113 63 chr12 86622317 86622393 -57164062 - L2 LINE L2 -1648 1666 1578 222 37 0 0 chr12 86623415 86623442 -57163013 + (A)n Simple_repeat Simple_repeat 1 27 0 1554 183 0 4 chr12 86626696 86626958 -57159497 + AluSx SINE Alu 1 261 -51 25 31 0 0 chr12 86626964 86626996 -57159459 + AT_rich Low_complexity Low_complexity 1 32 0 3717 155 36 12 chr12 86627593 86628232 -57158223 + MER50 LTR ERV1 69 722 -12 184 196 18 18 chr12 86629541 86629597 -57156858 + (TA)n Simple_repeat Simple_repeat 1 56 0 26 74 0 0 chr12 86629598 86629652 -57156803 + AT_rich Low_complexity Low_complexity 1 54 0 26 74 0 0 chr12 86630327 86630381 -57156074 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 86631075 86631097 -57155358 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 86631284 86631316 -57155139 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr12 86631520 86631569 -57154886 + AT_rich Low_complexity Low_complexity 1 49 0 508 324 99 35 chr12 86631907 86632057 -57154398 + L2 LINE L2 2599 2738 -575 1994 104 7 0 chr12 86632057 86632383 -57154072 + AluSx SINE Alu 1 328 0 508 324 99 35 chr12 86632383 86632644 -57153811 + L2 LINE L2 2738 3041 -272 22 35 0 0 chr12 86633135 86633164 -57153291 + AT_rich Low_complexity Low_complexity 1 29 0 222 217 0 0 chr12 86633386 86633432 -57153023 + L2 LINE L2 3223 3268 -4 1606 218 22 32 chr12 86634158 86634558 -57151897 + MSTD LTR MaLR 1 396 0 910 207 113 85 chr12 86634757 86635110 -57151345 + MLT1A1 LTR MaLR 1 363 -2 418 273 164 52 chr12 86635582 86635912 -57150543 + MLT1K LTR MaLR 213 579 -9 386 289 196 22 chr12 86636537 86636859 -57149596 - L2 LINE L2 0 3313 2936 288 282 153 0 chr12 86637076 86637207 -57149248 - L2 LINE L2 0 3313 3163 261 284 0 0 chr12 86637233 86637307 -57149148 - MIR SINE MIR -3 259 186 303 125 0 0 chr12 86637375 86637423 -57149032 + MADE1 DNA Mariner 33 80 0 270 326 47 31 chr12 86637494 86637623 -57148832 + MIR SINE MIR 48 178 -84 357 287 50 0 chr12 86637994 86638095 -57148360 + L2 LINE L2 3201 3306 -7 533 333 69 14 chr12 86638801 86639017 -57147438 - MIR SINE MIR 0 262 35 195 120 0 0 chr12 86640031 86640056 -57146399 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 86640057 86640079 -57146376 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr12 86640827 86640859 -57145596 + (A)n Simple_repeat Simple_repeat 1 32 0 432 0 0 0 chr12 86640859 86640907 -57145548 + (TA)n Simple_repeat Simple_repeat 2 49 0 27 49 0 0 chr12 86642601 86642642 -57143813 + AT_rich Low_complexity Low_complexity 1 41 0 180 316 35 88 chr12 86643393 86643564 -57142891 - MIR3 SINE MIR -17 191 30 * 183 309 96 21 chr12 86643507 86643601 -57142854 + MIR3 SINE MIR 69 169 -39 463 275 118 11 chr12 86643628 86643806 -57142649 - MIR SINE MIR 0 262 66 1314 183 77 0 chr12 86644050 86644324 -57142131 + MER58B DNA MER1_type 47 341 0 530 332 77 16 chr12 86644815 86645062 -57141393 + MIR SINE MIR 1 262 0 3242 273 41 27 chr12 86645461 86647567 -57138888 + L1M2a LINE L1 1555 3407 -3941 444 207 9 9 chr12 86647570 86647686 -57138769 + L1M2a LINE L1 3310 3425 -3742 341 300 0 0 chr12 86647696 86647786 -57138669 + L1MC4 LINE L1 6614 6703 -1339 237 132 0 0 chr12 86647786 86647824 -57138631 + (TA)n Simple_repeat Simple_repeat 2 39 0 1255 281 77 7 chr12 86647824 86648229 -57138226 + MLT-int LTR MaLR 262 694 -1041 1256 94 99 38 chr12 86648231 86648444 -57138011 - THE1B LTR MaLR -138 226 1 540 159 62 26 chr12 86648444 86648533 -57137922 - MSTD LTR MaLR -302 94 2 22 0 0 0 chr12 86648551 86648573 -57137882 + AT_rich Low_complexity Low_complexity 1 22 0 4612 205 41 11 chr12 86648573 86649699 -57136756 + L1M2a LINE L1 4308 5466 -1701 241 263 91 51 chr12 86649805 86649980 -57136475 - L1M4 LINE L1 -1496 4650 4469 455 280 100 14 chr12 86650241 86650445 -57136010 + MLT1J LTR MaLR 47 233 -213 252 341 11 0 chr12 86650669 86650757 -57135698 + MIR SINE MIR 63 151 -111 1851 110 3 95 chr12 86650986 86651323 -57135132 - AluSg SINE Alu -4 306 1 588 281 130 5 chr12 86652121 86652313 -57134142 + MIR SINE MIR 36 251 -11 632 259 23 33 chr12 86653214 86653457 -57132998 + MER77 LTR ERV1 348 599 -6 243 0 0 0 chr12 86653650 86653677 -57132778 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 323 335 51 66 chr12 86654217 86654474 -57131981 + MIR SINE MIR 10 262 0 314 370 28 51 chr12 86654755 86654971 -57131484 - MIR SINE MIR -32 230 20 315 0 0 0 chr12 86657511 86657546 -57128909 + (TC)n Simple_repeat Simple_repeat 1 35 0 26 64 0 0 chr12 86658516 86658563 -57127892 + AT_rich Low_complexity Low_complexity 1 47 0 743 150 28 67 chr12 86659073 86659253 -57127202 - L1MB3 LINE L1 -10 6173 6001 540 254 0 0 chr12 86659273 86659387 -57127068 - FLAM_A SINE Alu -19 114 1 2215 96 24 0 chr12 86659450 86659743 -57126712 - AluSg SINE Alu -10 300 1 279 280 13 13 chr12 86659768 86659843 -57126612 + L2 LINE L2 3230 3304 -9 223 367 115 24 chr12 86660095 86660468 -57125987 + L2 LINE L2 2804 3210 -103 26 30 0 0 chr12 86661947 86661980 -57124475 + AT_rich Low_complexity Low_complexity 1 33 0 363 361 82 6 chr12 86662154 86662312 -57124143 - MER91A DNA MER1_type -8 188 19 255 61 0 0 chr12 86662558 86662591 -57123864 + (GA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 86662951 86662972 -57123483 + AT_rich Low_complexity Low_complexity 1 21 0 1902 162 0 10 chr12 86662982 86663296 -57123159 + AluJb SINE Alu 2 312 0 2228 76 0 14 chr12 86664227 86664515 -57121940 - AluY SINE Alu -27 284 1 2054 102 0 14 chr12 86665170 86665490 -57120965 + AluSg SINE Alu 1 316 0 22 35 0 0 chr12 86665624 86665653 -57120802 + AT_rich Low_complexity Low_complexity 1 29 0 1454 171 7 19 chr12 86665657 86665966 -57120489 - L1MA4 LINE L1 -5 6295 5991 330 26 0 0 chr12 86666130 86666169 -57120286 + (TC)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr12 86666169 86666194 -57120261 + AT_rich Low_complexity Low_complexity 1 25 0 361 220 17 8 chr12 86666255 86666373 -57120082 + (TA)n Simple_repeat Simple_repeat 1 119 0 189 0 0 0 chr12 86667796 86667817 -57118638 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr12 86668357 86668378 -57118077 + AT_rich Low_complexity Low_complexity 1 21 0 459 0 0 0 chr12 86669831 86669882 -57116573 + (TA)n Simple_repeat Simple_repeat 2 52 0 431 283 28 62 chr12 86670103 86670280 -57116175 - MIR SINE MIR 0 262 92 2388 25 7 0 chr12 86670856 86671135 -57115320 - AluY SINE Alu -30 281 1 22 70 0 0 chr12 86671408 86671451 -57115004 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr12 86671650 86671682 -57114773 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr12 86672205 86672228 -57114227 + (GA)n Simple_repeat Simple_repeat 1 23 0 1024 58 0 0 chr12 86674000 86674121 -57112334 + AluY SINE Alu 2 122 -189 591 339 76 46 chr12 86674327 86674787 -57111668 + L2 LINE L2 2839 3312 -1 319 272 10 10 chr12 86675200 86675303 -57111152 + L2 LINE L2 966 1068 -2246 915 281 88 88 chr12 86675306 86675843 -57110612 + L2 LINE L2 2538 3085 -228 7388 38 8 2 chr12 86676621 86677864 -57108591 - L1PA5 LINE L1 0 6154 4910 224 167 0 19 chr12 86678080 86678134 -57108321 + (CA)n Simple_repeat Simple_repeat 2 54 0 246 95 0 0 chr12 86679079 86679121 -57107334 + (CA)n Simple_repeat Simple_repeat 1 42 0 2118 4 0 0 chr12 86679981 86680220 -57106235 - L1PA2 LINE L1 -4 6151 5913 26 82 0 0 chr12 86680620 86680681 -57105774 + AT_rich Low_complexity Low_complexity 1 61 0 1801 164 7 13 chr12 86680918 86681228 -57105227 + AluJo SINE Alu 1 308 -4 344 263 196 23 chr12 86681355 86681488 -57104967 + MIR SINE MIR 61 216 -46 27 29 0 0 chr12 86681802 86681836 -57104619 + AT_rich Low_complexity Low_complexity 1 34 0 1016 165 0 0 chr12 86681839 86681997 -57104458 - AluSg/x SINE Alu -20 290 133 627 261 28 17 chr12 86682753 86682933 -57103522 + MIR SINE MIR 6 187 -75 1754 144 72 0 chr12 86683932 86684267 -57102188 - AluSx SINE Alu 0 356 1 363 242 97 75 chr12 86685323 86685509 -57100946 + L2 LINE L2 3112 3301 -12 24 32 0 0 chr12 86685741 86685772 -57100683 + AT_rich Low_complexity Low_complexity 1 31 0 231 235 37 88 chr12 86686467 86686603 -57099852 + L1ME4a LINE L1 5991 6119 -2 198 345 139 6 chr12 86686756 86686921 -57099534 - MIR SINE MIR -11 251 65 1739 147 68 40 chr12 86687079 86687433 -57099022 + THE1B LTR MaLR 1 364 0 596 280 129 5 chr12 86687715 86687908 -57098547 - MIR SINE MIR -10 252 36 277 200 46 15 chr12 86688212 86688277 -57098178 - MIR SINE MIR -56 152 86 303 300 82 9 chr12 86688401 86688511 -57097944 - L2 LINE L2 0 3272 3155 274 292 77 39 chr12 86688880 86689010 -57097445 + L2 LINE L2 3179 3313 0 244 83 42 0 chr12 86689228 86689276 -57097179 + (TA)n Simple_repeat Simple_repeat 2 51 0 186 43 0 0 chr12 86689498 86689521 -57096934 + (TATG)n Simple_repeat Simple_repeat 2 24 0 248 87 0 0 chr12 86689525 86689571 -57096884 + LTR66 LTR ERVL 394 439 -171 382 333 0 11 chr12 86690041 86690221 -57096234 + L1MC4a LINE L1 5727 5904 -1904 296 330 0 37 chr12 86690595 86690704 -57095751 - L2 LINE L2 -13 3300 3196 575 181 9 52 chr12 86691080 86691196 -57095259 - FLAM_C SINE Alu -32 111 1 270 282 162 17 chr12 86691203 86691320 -57095135 - MIR SINE MIR -5 257 124 333 197 23 38 chr12 86693762 86693894 -57092561 + ORSL DNA AcHobo 5 134 -141 30 27 0 0 chr12 86693898 86693935 -57092520 + AT_rich Low_complexity Low_complexity 1 37 0 901 114 8 0 chr12 86694380 86694512 -57091943 + AluSq/x SINE Alu 1 133 -180 207 0 0 0 chr12 86695599 86695622 -57090833 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 183 301 0 108 chr12 86696246 86696339 -57090116 - L2 LINE L2 -4 3268 3186 258 402 8 0 chr12 86696447 86696569 -57089886 - L2 LINE L2 -238 3034 2912 501 241 0 0 chr12 86696576 86696688 -57089767 + L1MB8 LINE L1 5021 5132 -1014 1429 191 55 31 chr12 86696703 86697068 -57089387 + MLT1A2 LTR MaLR 1 505 0 2435 206 40 0 chr12 86697072 86697667 -57088788 + L1MB8 LINE L1 5152 5768 -416 3801 170 1 40 chr12 86697709 86698066 -57088389 - L1MB1 LINE L1 -18 6171 5857 1281 208 13 40 chr12 86698066 86698293 -57088162 - AluJo SINE Alu 0 312 124 207 0 0 0 chr12 86698293 86698316 -57088139 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1281 208 13 40 chr12 86698316 86698437 -57088018 - AluJo SINE Alu -188 124 1 3801 170 1 40 chr12 86698437 86698838 -57087617 - L1MB1 LINE L1 -332 5857 5442 572 158 8 55 chr12 86698835 86698962 -57087493 + L1MA10 LINE L1 6176 6296 -38 * 1565 196 34 16 chr12 86698966 86699354 -57087101 + L1MB8 LINE L1 5782 6176 -2 217 26 26 51 chr12 86699721 86699760 -57086695 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2059 123 0 3 chr12 86700099 86700401 -57086054 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 86701111 86701133 -57085322 + AT_rich Low_complexity Low_complexity 1 22 0 1628 181 0 10 chr12 86701137 86701430 -57085025 - AluSx SINE Alu -22 290 1 884 163 0 0 chr12 86701430 86701565 -57084890 - AluSq/x SINE Alu -177 135 1 182 425 11 0 chr12 86702126 86702213 -57084242 + L2 LINE L2 3150 3237 -35 478 279 124 28 chr12 86702367 86702657 -57083798 - L1MEd LINE L1 -5247 872 555 1736 87 8 0 chr12 86702683 86702924 -57083531 - AluY SINE Alu -8 303 61 240 275 110 0 chr12 86703228 86703319 -57083136 - L1MEd LINE L1 -6015 104 4 4341 82 10 0 chr12 86703604 86704202 -57082253 + L1PA10 LINE L1 5564 6167 -1 194 193 105 18 chr12 86704252 86704309 -57082146 + L3 LINE CR1 1219 1280 -297 20696 120 14 18 chr12 86704444 86707813 -57078642 - L1PA7 LINE L1 -2062 5522 1380 8961 81 6 3 chr12 86707808 86709854 -57076601 + L1PA7 LINE L1 5523 7570 -22 * 2602 199 81 11 chr12 86710070 86710677 -57075778 + L1MB7 LINE L1 5528 6176 -8 346 267 62 34 chr12 86711873 86712019 -57074436 + L1ME4a LINE L1 5750 5899 -222 24 0 0 0 chr12 86712353 86712377 -57074078 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 86712895 86712917 -57073538 + AT_rich Low_complexity Low_complexity 1 22 0 684 259 25 46 chr12 86713088 86713327 -57073128 - MIR SINE MIR -26 236 3 615 299 20 33 chr12 86714205 86714449 -57072006 + MIR SINE MIR 7 247 -15 204 40 0 0 chr12 86714449 86714474 -57071981 + (TTA)n Simple_repeat Simple_repeat 1 25 0 300 370 60 42 chr12 86715572 86715788 -57070667 + L2 LINE L2 2935 3154 -118 204 196 36 0 chr12 86716201 86716257 -57070198 + (TA)n Simple_repeat Simple_repeat 2 59 0 1197 217 136 9 chr12 86718419 86718751 -57067704 + MLT1A2 LTR MaLR 1 374 0 2275 277 118 50 chr12 86719233 86720695 -57065760 - L2 LINE L2 0 3313 1952 255 31 0 0 chr12 86720695 86720727 -57065728 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 51 0 0 chr12 86720728 86720767 -57065688 + (TA)n Simple_repeat Simple_repeat 1 39 0 2275 277 118 50 chr12 86720767 86720789 -57065666 - L2 LINE L2 -1360 1953 1670 189 317 218 0 chr12 86720799 86720941 -57065514 - L2 LINE L2 -1836 1478 1306 7629 26 1 0 chr12 86720941 86722077 -57064378 + L1PA3 LINE L1 5014 6152 -3 764 248 161 27 chr12 86722113 86722496 -57063959 - Charlie2 DNA MER1_type -5 2857 2375 1693 181 0 34 chr12 86722496 86722808 -57063647 + AluJo SINE Alu 1 302 0 764 248 161 27 chr12 86722808 86722976 -57063479 - Charlie2 DNA MER1_type -487 2375 2231 313 313 0 0 chr12 86723037 86723120 -57063335 - Charlie2 DNA MER1_type -2564 298 216 383 249 59 67 chr12 86723314 86723567 -57062888 + L1MC4 LINE L1 7695 7945 -97 2325 101 3 0 chr12 86724504 86724812 -57061643 - AluSp SINE Alu -4 309 1 2074 179 63 26 chr12 86725096 86725555 -57060900 - L1MD3 LINE L1 -15 7980 7505 2128 104 0 0 chr12 86725566 86725895 -57060560 - AluSg SINE Alu 0 330 2 336 311 60 13 chr12 86726539 86726690 -57059765 - MIR SINE MIR -40 222 65 188 65 0 32 chr12 86726790 86726821 -57059634 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 240 281 12 24 chr12 86727059 86727141 -57059314 + MLT1I LTR MaLR 26 106 -303 209 343 14 0 chr12 86727299 86727372 -57059083 + L2 LINE L2 3194 3267 -5 920 267 92 34 chr12 86727944 86728564 -57057891 + L2 LINE L2 2653 3312 -1 376 251 45 123 chr12 86729339 86729518 -57056937 - MER5B DNA MER1_type -5 173 9 265 200 17 33 chr12 86729578 86729638 -57056817 - L2 LINE L2 0 3313 3255 216 67 0 0 chr12 86730196 86730226 -57056229 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr12 86730700 86730724 -57055731 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr12 86731048 86731084 -57055371 + AT_rich Low_complexity Low_complexity 1 36 0 6406 58 5 3 chr12 86731174 86732042 -57054413 + L1PA7 LINE L1 5196 6065 -89 330 267 19 38 chr12 86732051 86732156 -57054299 - MER5B DNA MER1_type -68 110 8 760 31 0 0 chr12 86732162 86732258 -57054197 + L1PA8 LINE L1 6077 6172 0 201 373 63 8 chr12 86733411 86733537 -57052918 + L2 LINE L2 3180 3312 -1 194 378 122 26 chr12 86733540 86733696 -57052759 - L3 LINE CR1 -398 1179 1009 1045 177 16 10 chr12 86733701 86733893 -57052562 - MER58A DNA MER1_type -6 218 26 755 224 46 15 chr12 86733903 86734099 -57052356 + MER105 DNA DNA 1 202 -2 291 273 251 21 chr12 86734101 86734288 -57052167 - L3 LINE CR1 -561 1016 787 765 306 107 4 chr12 86734490 86734771 -57051684 + L2 LINE L2 2433 2742 -572 2369 92 3 0 chr12 86735214 86735520 -57050935 + AluSp SINE Alu 1 307 -6 2410 18 0 0 chr12 86735588 86735868 -57050587 - L1PA3 LINE L1 0 6155 5876 1815 19 0 0 chr12 86735868 86736077 -57050378 + L1PA3 LINE L1 5683 5891 -264 25 31 0 0 chr12 86737103 86737135 -57049320 + AT_rich Low_complexity Low_complexity 1 32 0 366 333 41 0 chr12 86737438 86737585 -57048870 - MIR SINE MIR -1 261 109 194 374 36 65 chr12 86738557 86738696 -57047759 + L2 LINE L2 3138 3272 0 198 331 71 16 chr12 86738888 86739015 -57047440 + MIR SINE MIR 116 249 -13 193 378 58 44 chr12 86739085 86739360 -57047095 + L2 LINE L2 2636 2914 -400 2213 128 6 19 chr12 86739519 86739885 -57046570 - L1PB2 LINE L1 -2 6149 5789 3471 109 10 2 chr12 86739886 86740500 -57045955 + L1PB2 LINE L1 5153 5770 -381 706 192 62 0 chr12 86740498 86740644 -57045811 - L1MD3 LINE L1 -10 7985 7831 * 28 0 0 0 chr12 86741720 86741748 -57044707 + AT_rich Low_complexity Low_complexity 1 28 0 272 352 109 22 chr12 86742613 86742843 -57043612 + L2 LINE L2 2309 2558 -756 216 317 106 21 chr12 86743136 86743278 -57043177 + MIR SINE MIR 48 201 -61 23 33 0 0 chr12 86743341 86743371 -57043084 + AT_rich Low_complexity Low_complexity 1 30 0 1591 180 146 15 chr12 86743379 86743790 -57042665 + MLT1C LTR MaLR 1 465 -2 996 304 87 67 chr12 86744783 86744915 -57041540 + L2 LINE L2 469 597 -2717 1245 55 43 0 chr12 86744915 86745079 -57041376 + L1PA5 LINE L1 5983 6153 -1 996 304 87 67 chr12 86745079 86745541 -57040914 + L2 LINE L2 597 1075 -2239 395 335 44 19 chr12 86745674 86745832 -57040623 + L2 LINE L2 3152 3313 0 3659 176 35 26 chr12 86746772 86747467 -57038988 - MER44D DNA MER2_type -4 701 1 227 350 21 0 chr12 86747546 86747643 -57038812 - L2 LINE L2 -1 3312 3214 199 348 99 33 chr12 86747746 86747927 -57038528 - L2 LINE L2 -386 2928 2736 635 163 84 11 chr12 86748542 86748720 -57037735 + AluY SINE Alu 30 220 -91 22 0 0 0 chr12 86748765 86748787 -57037668 + AT_rich Low_complexity Low_complexity 1 22 0 271 268 17 45 chr12 86748963 86749142 -57037313 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 24 0 0 0 chr12 86749157 86749181 -57037274 + GC_rich Low_complexity Low_complexity 1 24 0 1817 62 40 44 chr12 86749911 86750183 -57036272 + AluY SINE Alu 30 300 -11 836 286 91 4 chr12 86751192 86751568 -57034887 - MLT1J1 LTR MaLR 0 446 1 2399 234 112 32 chr12 86752409 86753117 -57033338 + MLT1A1-int LTR MaLR 972 1735 0 1740 193 28 17 chr12 86753121 86753478 -57032977 + MLT1A1 LTR MaLR 5 365 0 1296 242 209 9 chr12 86753644 86754070 -57032385 + MLT1E1 LTR MaLR 144 654 0 21 0 0 0 chr12 86754316 86754337 -57032118 + AT_rich Low_complexity Low_complexity 1 21 0 303 216 112 22 chr12 86754750 86754884 -57031571 + MLT1K LTR MaLR 435 580 -8 303 289 43 103 chr12 86755565 86755818 -57030637 + L2 LINE L2 1618 1855 -1459 424 310 138 56 chr12 86755844 86756016 -57030439 + L2 LINE L2 2967 3124 -189 1729 178 54 20 chr12 86756016 86756365 -57030090 + MLT1A1 LTR MaLR 5 365 0 424 310 138 56 chr12 86756365 86756511 -57029944 + L2 LINE L2 3124 3311 -2 21 36 0 0 chr12 86756965 86756993 -57029462 + AT_rich Low_complexity Low_complexity 1 28 0 231 36 0 0 chr12 86757903 86757931 -57028524 + (GA)n Simple_repeat Simple_repeat 1 28 0 915 196 24 129 chr12 86758035 86758136 -57028319 + MER58B DNA MER1_type 3 113 -2307 1264 90 10 20 chr12 86758136 86758336 -57028119 + L1PA13 LINE L1 5962 6159 -4 915 196 24 129 chr12 86758336 86758611 -57027844 + MER58B DNA MER1_type 113 340 -1 516 16 0 0 chr12 86762039 86762100 -57024355 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 180 217 0 0 chr12 86762101 86762147 -57024308 + (TA)n Simple_repeat Simple_repeat 2 47 0 3163 124 6 25 chr12 86762282 86762831 -57023624 + L1MA4A LINE L1 5761 6298 -5 204 40 0 0 chr12 86763977 86764002 -57022453 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr12 86764880 86764918 -57021537 + AT_rich Low_complexity Low_complexity 1 38 0 399 125 11 23 chr12 86765025 86765113 -57021342 + (TA)n Simple_repeat Simple_repeat 1 87 0 332 316 115 21 chr12 86766384 86766618 -57019837 + MIR SINE MIR 6 261 -1 2327 281 117 21 chr12 86766692 86767817 -57018638 - L2 LINE L2 -39 3274 2042 664 210 93 19 chr12 86767821 86767983 -57018472 + MER5A DNA MER1_type 16 189 0 299 65 22 0 chr12 86768392 86768438 -57018017 + (GA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr12 86768911 86768940 -57017515 + AT_rich Low_complexity Low_complexity 1 29 0 1120 197 9 0 chr12 86770129 86770347 -57016108 + L1MC3 LINE L1 6371 6590 -1195 655 229 93 39 chr12 86770380 86770801 -57015654 + MLT1D LTR MaLR 27 503 -2 471 220 9 9 chr12 86770812 86770921 -57015534 + L1MC3 LINE L1 6594 6702 -1083 1190 205 50 53 chr12 86770927 86771309 -57015146 + MER67C LTR ERV1 1 403 -243 244 264 113 9 chr12 86771321 86771427 -57015028 + MER67D LTR ERV1 359 475 -39 3596 143 105 127 chr12 86771476 86771912 -57014543 + L1MC3 LINE L1 6705 7149 -636 283 279 13 0 chr12 86771912 86771991 -57014464 + MLT1F1 LTR MaLR 35 114 -453 3596 143 105 127 chr12 86771991 86772581 -57013874 + L1MC3 LINE L1 7149 7785 0 236 232 183 0 chr12 86772829 86772911 -57013544 + MER20B DNA MER1_type 178 274 -509 2258 98 3 3 chr12 86774187 86774493 -57011962 + AluSx SINE Alu 1 306 -6 231 282 24 0 chr12 86774804 86774889 -57011566 + MER20B DNA MER1_type 283 369 -414 552 256 54 57 chr12 86774949 86775246 -57011209 + MER20B DNA MER1_type 488 783 0 381 189 47 20 chr12 86775841 86775989 -57010466 + (TA)n Simple_repeat Simple_repeat 2 153 0 252 79 53 26 chr12 86776008 86776084 -57010371 + (TA)n Simple_repeat Simple_repeat 2 79 0 1920 143 15 0 chr12 86776084 86776413 -57010042 + L1PB3 LINE L1 5821 6154 0 421 170 48 7 chr12 86776682 86776829 -57009626 + (TA)n Simple_repeat Simple_repeat 1 153 0 181 283 38 0 chr12 86777043 86777096 -57009359 - MIR SINE MIR -71 137 83 205 214 0 18 chr12 86777271 86777327 -57009128 + (TA)n Simple_repeat Simple_repeat 2 56 0 803 290 61 35 chr12 86777597 86778034 -57008421 - MLT1H LTR MaLR -40 509 12 1120 132 35 5 chr12 86778248 86778445 -57008010 + L1MA4 LINE L1 6093 6295 -5 266 301 16 65 chr12 86778487 86778610 -57007845 + MIR SINE MIR 90 206 -56 21 57 0 0 chr12 86779429 86779464 -57006991 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 86779855 86779878 -57006577 + AT_rich Low_complexity Low_complexity 1 23 0 2798 7 0 0 chr12 86780430 86780739 -57005716 + AluYa5 SINE Alu 1 309 -2 23 0 0 0 chr12 86781001 86781024 -57005431 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 86781992 86782013 -57004442 + AT_rich Low_complexity Low_complexity 1 21 0 1679 128 0 104 chr12 86782013 86782349 -57004106 + AluSp SINE Alu 1 301 -2 1896 136 0 0 chr12 86782494 86782767 -57003688 + AluSx SINE Alu 30 302 -10 2721 10 0 0 chr12 86782853 86783154 -57003301 + AluY SINE Alu 1 301 -10 225 0 0 0 chr12 86783472 86783497 -57002958 + (TG)n Simple_repeat Simple_repeat 1 25 0 712 262 72 84 chr12 86783505 86784017 -57002438 + MLT1G3 LTR MaLR 7 497 -33 337 109 16 16 chr12 86784583 86784647 -57001808 - AluSq/x SINE Alu -169 133 70 436 373 70 17 chr12 86785022 86785263 -57001192 - MIR SINE MIR -6 256 3 620 254 0 7 chr12 86785535 86785673 -57000782 - FLAM_A SINE Alu -5 137 1 351 325 78 71 chr12 86787146 86787429 -56999026 - L2 LINE L2 -56 3216 2932 376 320 87 45 chr12 86787832 86788144 -56998311 - L2 LINE L2 -1153 2161 1837 207 271 21 0 chr12 86788220 86788268 -56998187 + L2 LINE L2 3224 3272 0 21 71 0 0 chr12 86788477 86788519 -56997936 + AT_rich Low_complexity Low_complexity 1 42 0 457 183 35 3 chr12 86788555 86788690 -56997765 - MER2 DNA MER2_type -156 189 3 38 61 0 0 chr12 86789093 86789159 -56997296 + AT_rich Low_complexity Low_complexity 1 66 0 256 299 14 54 chr12 86790020 86790167 -56996288 + L2 LINE L2 2170 2310 -1004 261 336 44 26 chr12 86790708 86790821 -56995634 - L2 LINE L2 -8 3264 3150 186 43 0 0 chr12 86792098 86792121 -56994334 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2182 118 30 28 chr12 86792132 86792495 -56993960 + THE1B LTR MaLR 1 364 0 11000 99 27 0 chr12 86792495 86794034 -56992421 + THE1B-int LTR MaLR 1 1580 0 1106 193 40 10 chr12 86794036 86794238 -56992217 + THE1B LTR MaLR 3 210 -154 208 347 14 0 chr12 86794509 86794581 -56991874 + L3 LINE CR1 474 546 -1031 28 48 0 0 chr12 86794652 86794694 -56991761 + AT_rich Low_complexity Low_complexity 1 42 0 271 182 26 13 chr12 86796082 86796159 -56990296 + GA-rich Low_complexity Low_complexity 2 79 0 1012 263 18 36 chr12 86796413 86796797 -56989658 + L1MCc LINE L1 17 393 -6030 1112 303 21 47 chr12 86797265 86797776 -56988679 + L1MCc LINE L1 817 1314 -5109 261 167 24 24 chr12 86797776 86797860 -56988595 + GA-rich Low_complexity Low_complexity 1 84 0 240 312 24 80 chr12 86798440 86798565 -56987890 - L2 LINE L2 -231 3041 2924 491 277 98 65 chr12 86798626 86799155 -56987300 + MLT1G1 LTR MaLR 2 538 -4 224 403 78 7 chr12 86801192 86801346 -56985109 - MER5A DNA MER1_type 0 189 25 27 0 0 0 chr12 86802200 86802227 -56984228 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 86802278 86802300 -56984155 + AT_rich Low_complexity Low_complexity 1 22 0 210 143 0 0 chr12 86802682 86802717 -56983738 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 327 0 0 chr12 86804765 86804820 -56981635 + (TG)n Simple_repeat Simple_repeat 1 55 0 2819 7 0 0 chr12 86808367 86808677 -56977778 + AluYa5 SINE Alu 1 310 -1 337 314 122 23 chr12 86810058 86810230 -56976225 - MIR3 SINE MIR -3 205 17 6865 54 0 2 chr12 86810275 86811110 -56975345 + HERVL LTR ERVL 37 869 -4785 1539 38 124 0 chr12 86811110 86811282 -56975173 + MLT2A1 LTR ERVL 209 413 -31 254 95 24 0 chr12 86811282 86811324 -56975131 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 1539 38 124 0 chr12 86811324 86811361 -56975094 + MLT2A1 LTR ERVL 413 444 0 2122 110 0 31 chr12 86812043 86812362 -56974093 + AluSc SINE Alu 1 309 0 2172 71 7 10 chr12 86812853 86813147 -56973308 - AluY SINE Alu -18 293 1 1009 300 66 57 chr12 86813205 86813815 -56972640 + MER21B LTR ERV1 95 709 -154 25 65 0 0 chr12 86814702 86814748 -56971707 + AT_rich Low_complexity Low_complexity 1 46 0 350 284 57 62 chr12 86815507 86815718 -56970737 - MIR SINE MIR -3 259 50 66 50 0 0 chr12 86816469 86816570 -56969885 + AT_rich Low_complexity Low_complexity 1 101 0 438 264 171 19 chr12 86817243 86817459 -56968996 + MIR SINE MIR 3 251 -11 792 237 58 157 chr12 86817973 86818476 -56967979 + L2 LINE L2 2858 3310 -3 783 265 76 50 chr12 86818593 86818910 -56967545 + L1MC4 LINE L1 6745 7069 -973 180 0 0 0 chr12 86818911 86818931 -56967524 + (GA)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr12 86819689 86819717 -56966738 + AT_rich Low_complexity Low_complexity 1 28 0 429 324 75 25 chr12 86821386 86821631 -56964824 - L2 LINE L2 -8 3305 3036 806 249 106 86 chr12 86821631 86822132 -56964323 - MLT1J LTR MaLR 0 511 1 429 324 75 25 chr12 86822132 86822207 -56964248 - L2 LINE L2 -277 3036 2966 1478 266 47 41 chr12 86823617 86824154 -56962301 - MLT1F LTR MaLR 0 542 3 183 156 0 0 chr12 86824162 86824194 -56962261 + (CAT)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr12 86824334 86824357 -56962098 + AT_rich Low_complexity Low_complexity 1 23 0 453 191 154 18 chr12 86824452 86824562 -56961893 - MIR SINE MIR -71 191 67 267 304 163 15 chr12 86825636 86825771 -56960684 + MER5A DNA MER1_type 35 189 0 407 313 7 28 chr12 86825995 86826139 -56960316 - MIR SINE MIR -34 228 88 46 33 0 0 chr12 86826350 86826410 -56960045 + AT_rich Low_complexity Low_complexity 1 60 0 1364 209 0 11 chr12 86827693 86827975 -56958480 - AluJb SINE Alu -33 279 1 25 31 0 0 chr12 86828187 86828219 -56958236 + AT_rich Low_complexity Low_complexity 1 32 0 215 364 43 14 chr12 86828558 86828698 -56957757 - L2 LINE L2 -194 3078 2935 1693 143 0 151 chr12 86828806 86829163 -56957292 + Charlie3 DNA MER1_type 31 2706 -4 1721 173 10 3 chr12 86829553 86829859 -56956596 + AluJo SINE Alu 1 308 -4 188 119 0 24 chr12 86830157 86830199 -56956256 + (TA)n Simple_repeat Simple_repeat 1 41 0 362 293 114 44 chr12 86830509 86830782 -56955673 + L2 LINE L2 2994 3285 -28 222 37 0 0 chr12 86830804 86830831 -56955624 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 201 345 50 36 chr12 86831343 86831482 -56954973 - L3b LINE CR1 -340 1243 1103 9378 121 17 5 chr12 86833649 86835130 -56951325 - L1P LINE L1 -4648 1498 1 22 0 0 0 chr12 86835228 86835250 -56951205 + AT_rich Low_complexity Low_complexity 1 22 0 234 137 39 20 chr12 86835513 86835564 -56950891 - L1MC4 LINE L1 -1339 6703 6652 22 0 0 0 chr12 86835836 86835858 -56950597 + AT_rich Low_complexity Low_complexity 1 22 0 2100 129 6 0 chr12 86835910 86836221 -56950234 - AluSp SINE Alu 0 313 1 497 284 25 25 chr12 86836754 86836993 -56949462 + L1ME LINE L1 833 1071 -4999 348 269 59 17 chr12 86836997 86837116 -56949339 + L1ME LINE L1 1179 1302 -4959 2300 78 0 0 chr12 86837119 86837403 -56949052 + AluY SINE Alu 1 284 -27 463 24 97 16 chr12 86837403 86837527 -56948928 + (TA)n Simple_repeat Simple_repeat 1 134 0 273 250 68 23 chr12 86837583 86837671 -56948784 + HAL1 LINE L1 1502 1593 -914 421 253 80 46 chr12 86837689 86837926 -56948529 + L1 LINE L1 3760 4004 -2142 334 227 24 0 chr12 86837993 86838115 -56948340 + L1 LINE L1 4254 4379 -1767 * 2185 259 78 25 chr12 86838107 86839103 -56947352 + L1ME LINE L1 4399 5478 -622 21 0 0 0 chr12 86839198 86839219 -56947236 + AT_rich Low_complexity Low_complexity 1 21 0 469 314 76 8 chr12 86839550 86839920 -56946535 - L1M4 LINE L1 -3486 2660 2266 263 30 0 0 chr12 86839972 86840005 -56946450 - L1P LINE L1 -4478 1668 1636 445 92 15 0 chr12 86840238 86840303 -56946152 + L1PB4 LINE L1 6080 6145 -11 21 0 0 0 chr12 86840309 86840330 -56946125 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 86840557 86840591 -56945864 + AT_rich Low_complexity Low_complexity 1 34 0 791 179 12 6 chr12 86841989 86842151 -56944304 + L1MDa LINE L1 2020 2182 -4358 271 334 34 106 chr12 86843186 86843536 -56942919 + L2 LINE L2 2933 3257 -15 224 333 26 39 chr12 86843707 86843785 -56942670 + MIR SINE MIR 25 101 -161 245 345 7 43 chr12 86844924 86845063 -56941392 - MIR SINE MIR -2 260 127 1672 172 7 3 chr12 86845666 86845962 -56940493 + AluJb SINE Alu 1 297 -15 24 53 0 0 chr12 86846056 86846094 -56940361 + AT_rich Low_complexity Low_complexity 1 38 0 296 320 16 39 chr12 86846426 86846554 -56939901 + LTR67 LTR ERVL 96 220 -337 2072 218 68 2 chr12 86846576 86847043 -56939412 - MLT1D LTR MaLR -7 498 1 34 65 0 0 chr12 86847635 86847697 -56938758 + AT_rich Low_complexity Low_complexity 1 62 0 1992 140 10 7 chr12 86848185 86848485 -56937970 + AluSx SINE Alu 3 303 -9 181 255 157 0 chr12 86848515 86848566 -56937889 - MIR3 SINE MIR -42 166 108 1413 198 3 48 chr12 86849427 86849780 -56936675 - L1MA4 LINE L1 -7 6293 5957 235 160 27 27 chr12 86850960 86851035 -56935420 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 511 254 195 5 chr12 86853783 86853968 -56932487 + L2 LINE L2 2055 2274 -1040 13235 89 16 9 chr12 86854122 86856120 -56930335 + L1P LINE L1 2966 4976 -1170 465 340 25 13 chr12 86856477 86856636 -56929819 - MIR3 SINE MIR -6 202 42 362 295 115 0 chr12 86856802 86856924 -56929531 + MIR SINE MIR 50 185 -77 5908 210 10 5 chr12 86858184 86859514 -56926941 - L1 LINE L1 -1840 4306 2971 21 0 0 0 chr12 86864923 86864944 -56921511 + AT_rich Low_complexity Low_complexity 1 21 0 2917 252 40 27 chr12 86865451 86866368 -56920087 - L1MC3 LINE L1 -8 7777 6849 239 309 136 0 chr12 86866654 86866764 -56919691 + MLT1I LTR MaLR 48 172 -237 1357 239 99 63 chr12 86867817 86868615 -56917840 - Charlie2 DNA MER1_type -180 2682 1856 478 251 164 46 chr12 86868606 86868869 -56917586 - Charlie2 DNA MER1_type -2452 330 37 * 237 286 55 11 chr12 86869125 86869216 -56917239 + MIR SINE MIR 117 211 -51 189 0 0 0 chr12 86869788 86869809 -56916646 + (A)n Simple_repeat Simple_repeat 1 21 0 210 381 71 8 chr12 86869884 86870010 -56916445 - L2 LINE L2 0 3272 3139 233 342 0 25 chr12 86871291 86871411 -56915044 + GA-rich Low_complexity Low_complexity 4 120 0 500 99 0 12 chr12 86871585 86871666 -56914789 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 3807 150 57 1 chr12 86871809 86872477 -56913978 - L1PA16 LINE L1 -2 6164 5460 949 169 38 22 chr12 86872585 86872768 -56913687 + AluSg/x SINE Alu 104 289 -23 258 32 0 0 chr12 86873286 86873317 -56913138 + (CA)n Simple_repeat Simple_repeat 2 32 0 4513 251 51 10 chr12 86874333 86876251 -56910204 - L1PA15-16 LINE L1 -3126 3723 1731 607 320 13 22 chr12 86876411 86876642 -56909813 - L1PA15-16 LINE L1 -6558 281 53 219 265 0 0 chr12 86876785 86876834 -56909621 - L2 LINE L2 0 3313 3265 189 132 38 19 chr12 86877234 86877287 -56909168 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 190 319 0 42 chr12 86878192 86878264 -56908191 + L2 LINE L2 3238 3306 -7 198 103 0 0 chr12 86879289 86879318 -56907137 + (TAA)n Simple_repeat Simple_repeat 2 30 0 219 339 0 0 chr12 86879349 86879408 -56907047 - MIR SINE MIR -141 121 63 2315 273 181 23 chr12 86879595 86880620 -56905835 - L2 LINE L2 -799 2515 1330 414 330 44 35 chr12 86881463 86881666 -56904789 + MIR SINE MIR 8 212 -50 479 312 36 28 chr12 86881994 86882241 -56904214 + L2 LINE L2 2653 2901 -413 410 297 42 42 chr12 86882254 86882490 -56903965 - L2 LINE L2 -2 3311 3076 497 269 209 54 chr12 86882538 86882764 -56903691 + L2 LINE L2 2927 3117 -196 261 0 0 0 chr12 86882764 86882793 -56903662 + (TG)n Simple_repeat Simple_repeat 2 30 0 497 269 209 54 chr12 86882793 86882901 -56903554 + L2 LINE L2 3117 3313 0 2433 49 0 13 chr12 86883037 86883342 -56903113 - AluY SINE Alu -10 301 1 181 129 0 0 chr12 86883358 86883389 -56903066 - L2 LINE L2 0 3313 3283 257 296 23 23 chr12 86883398 86883486 -56902969 - L2 LINE L2 0 3313 3226 2153 71 27 3 chr12 86884388 86884684 -56901771 + AluY SINE Alu 1 303 -8 787 291 89 4 chr12 86885696 86886069 -56900386 - MLT1J1 LTR MaLR 0 446 5 2364 236 112 35 chr12 86886900 86887613 -56898842 + MLT1A1-int LTR MaLR 968 1735 0 1740 193 28 17 chr12 86887617 86887974 -56898481 + MLT1A1 LTR MaLR 5 365 0 1296 242 209 9 chr12 86888140 86888566 -56897889 + MLT1E1 LTR MaLR 144 654 0 21 0 0 0 chr12 86888812 86888833 -56897622 + AT_rich Low_complexity Low_complexity 1 21 0 303 216 112 22 chr12 86889246 86889380 -56897075 + MLT1K LTR MaLR 435 580 -8 286 367 57 33 chr12 86890431 86890619 -56895836 - MIR SINE MIR -38 224 29 1528 147 65 84 chr12 86890619 86891001 -56895454 + THE1C LTR MaLR 1 375 0 286 367 57 33 chr12 86891001 86891022 -56895433 - MIR SINE MIR -233 29 10 325 314 57 29 chr12 86891411 86891551 -56894904 - L2 LINE L2 0 3272 3129 22 0 0 0 chr12 86892238 86892260 -56894195 + AT_rich Low_complexity Low_complexity 1 22 0 257 267 11 11 chr12 86892435 86892525 -56893930 + (TA)n Simple_repeat Simple_repeat 1 90 0 185 206 59 73 chr12 86892599 86892667 -56893788 - L2 LINE L2 -252 3061 2995 1245 197 154 18 chr12 86892690 86893060 -56893395 + MLT1C LTR MaLR 6 505 0 460 324 96 24 chr12 86893060 86893310 -56893145 - L2 LINE L2 -411 2903 2636 4850 143 23 39 chr12 86893435 86894378 -56892077 - Tigger3b DNA MER2_type -303 928 1 978 295 126 45 chr12 86895054 86895873 -56890582 + L2 LINE L2 2404 3309 -4 1743 251 74 33 chr12 86896538 86896600 -56889855 - L1ME1 LINE L1 -1 6165 6107 2450 72 0 0 chr12 86896600 86896907 -56889548 + AluY SINE Alu 2 308 -3 1743 251 74 33 chr12 86896907 86897425 -56889030 - L1ME1 LINE L1 -59 6107 5561 7795 78 9 19 chr12 86897572 86898753 -56887702 + L1P LINE L1 1403 2571 -3575 7377 31 7 0 chr12 86898870 86900005 -56886450 + L1PA4 LINE L1 5014 6153 -2 502 255 45 101 chr12 86900406 86900535 -56885920 - MIR SINE MIR -10 252 144 7461 33 5 0 chr12 86900535 86901584 -56884871 + L1PA4 LINE L1 5103 6155 0 502 255 45 101 chr12 86901584 86901721 -56884734 - MIR SINE MIR -118 144 1 226 412 89 11 chr12 86901965 86902312 -56884143 + L2 LINE L2 200 573 -2741 358 271 131 25 chr12 86903756 86903878 -56882577 - L2 LINE L2 -1 3312 3178 1019 314 223 20 chr12 86904205 86905139 -56881316 - L2 LINE L2 0 3313 2157 303 333 24 16 chr12 86905150 86905276 -56881179 + L2 LINE L2 695 821 -2493 737 318 136 45 chr12 86905340 86906155 -56880300 + L2 LINE L2 1688 2576 -738 236 384 96 19 chr12 86906265 86906536 -56879919 + L2 LINE L2 2576 2867 -447 213 335 63 110 chr12 86906567 86906931 -56879524 + L2 LINE L2 2918 3264 -8 21 0 0 0 chr12 86907146 86907167 -56879288 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 30 chr12 86910538 86910556 -56875899 + AT_rich Low_complexity Low_complexity 1 19 -13 2077 174 51 11 chr12 86910556 86911004 -56875451 - L1MA4 LINE L1 0 6300 5835 22 0 0 30 chr12 86911004 86911018 -56875437 + AT_rich Low_complexity Low_complexity 19 32 0 423 304 83 16 chr12 86911112 86911334 -56875121 - MER102b DNA MER1_type -44 297 74 314 306 191 0 chr12 86913583 86913740 -56872715 - MIR SINE MIR -3 259 73 845 300 129 28 chr12 86913804 86914159 -56872296 + REP3 LTR ERV 8 422 -140 878 238 12 0 chr12 86914159 86914331 -56872124 - MER96 DNA MER1_type 0 175 2 845 300 129 28 chr12 86914331 86914439 -56872016 + REP3 LTR ERV 422 518 -44 1738 177 70 21 chr12 86915402 86915774 -56870681 + MLT1B LTR MaLR 1 390 0 1293 300 237 46 chr12 86916031 86917057 -56869398 + L2 LINE L2 1748 2984 -329 1749 165 115 35 chr12 86917057 86917457 -56868998 - MSTB1 LTR MaLR 0 432 1 1293 300 237 46 chr12 86917457 86917503 -56868952 + L2 LINE L2 2984 3020 -293 407 264 62 34 chr12 86917544 86917722 -56868733 - LTR33 LTR ERVL -3 518 336 246 274 32 0 chr12 86917759 86917821 -56868634 + L2 LINE L2 3244 3307 -6 246 360 0 30 chr12 86917999 86918099 -56868356 - MIR3 SINE MIR -102 106 10 606 259 132 18 chr12 86919175 86919403 -56867052 - MIR SINE MIR -1 261 8 554 205 157 54 chr12 86920287 86920453 -56866002 + MER5A DNA MER1_type 6 188 -1 286 330 78 57 chr12 86920456 86920848 -56865607 + L2 LINE L2 2686 3085 -187 256 279 24 5 chr12 86920939 86921036 -56865419 + MIR SINE MIR 17 115 -93 38 0 0 0 chr12 86921086 86921124 -56865331 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr12 86922134 86922156 -56864299 + (TA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr12 86922604 86922641 -56863814 + AT_rich Low_complexity Low_complexity 1 37 0 2058 181 100 24 chr12 86923987 86924456 -56861999 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr12 86925177 86925199 -56861256 + AT_rich Low_complexity Low_complexity 1 22 0 1126 235 88 59 chr12 86925220 86925415 -56861040 + MLT1F LTR MaLR 1 189 -353 372 59 0 0 chr12 86925415 86925466 -56860989 + (CA)n Simple_repeat Simple_repeat 2 52 0 1126 235 88 59 chr12 86925466 86925794 -56860661 + MLT1F LTR MaLR 189 539 -3 22 0 0 0 chr12 86925861 86925883 -56860572 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 86926254 86926277 -56860178 + AT_rich Low_complexity Low_complexity 1 23 0 1734 178 104 16 chr12 86926758 86927134 -56859321 + MSTA LTR MaLR 20 428 0 8325 180 26 15 chr12 86927134 86928766 -56857689 + MSTA-int LTR MaLR 1 1651 0 2122 188 70 0 chr12 86928766 86929166 -56857289 + MSTA LTR MaLR 1 428 0 590 286 27 5 chr12 86929561 86929746 -56856709 + MIR SINE MIR 18 206 -56 4586 160 30 18 chr12 86932816 86933855 -56852600 + L1PA16 LINE L1 5119 6166 0 297 124 7 146 chr12 86934085 86934202 -56852253 - LOR1-int LTR ERV1 -2181 4318 3661 23 0 0 0 chr12 86934640 86934663 -56851792 + AT_rich Low_complexity Low_complexity 1 23 0 234 200 64 128 chr12 86935611 86935736 -56850719 - LTR33 LTR ERVL -390 131 15 21 0 0 0 chr12 86935781 86935802 -56850653 + AT_rich Low_complexity Low_complexity 1 21 0 1044 238 139 54 chr12 86935852 86936356 -56850099 - MER101B LTR ERV1 0 570 24 2210 103 3 10 chr12 86936504 86936815 -56849640 + AluSx SINE Alu 3 311 -1 304 279 126 42 chr12 86937048 86937238 -56849217 - L1MC4a LINE L1 -1826 5982 5777 342 137 0 0 chr12 86937367 86937418 -56849037 - MER101 LTR ERV1 -176 298 248 774 290 37 26 chr12 86937898 86938167 -56848288 - L1MEc LINE L1 -6090 306 35 35 24 0 0 chr12 86938287 86938329 -56848126 + AT_rich Low_complexity Low_complexity 1 42 0 732 154 16 0 chr12 86940115 86940238 -56846217 - AluJb SINE Alu -7 305 181 377 342 129 21 chr12 86941121 86941554 -56844901 + L2 LINE L2 1605 2084 -1230 29 78 0 0 chr12 86942292 86942356 -56844099 + AT_rich Low_complexity Low_complexity 1 64 0 261 57 0 0 chr12 86942877 86942912 -56843543 + (CA)n Simple_repeat Simple_repeat 2 36 0 1458 212 75 0 chr12 86943393 86943700 -56842755 - MER58B DNA MER1_type -2 339 10 469 223 54 9 chr12 86943957 86944069 -56842386 - L2 LINE L2 -6 3307 3191 839 260 51 28 chr12 86944074 86944328 -56842127 - LTR16A1 LTR ERVL 0 457 198 395 323 118 43 chr12 86944420 86944838 -56841617 - L2 LINE L2 -104 3209 2763 249 270 0 16 chr12 86945940 86946003 -56840452 + LTR67 LTR ERVL 494 555 -2 321 140 0 0 chr12 86946547 86946604 -56839851 + (CA)n Simple_repeat Simple_repeat 2 58 0 959 240 40 33 chr12 86946893 86947219 -56839236 + MLT1E LTR MaLR 310 590 -3 22 0 0 0 chr12 86947286 86947308 -56839147 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 86947679 86947702 -56838753 + AT_rich Low_complexity Low_complexity 1 23 0 2099 164 99 10 chr12 86947972 86948357 -56838098 + MSTA LTR MaLR 10 428 0 3009 161 16 21 chr12 86948357 86948923 -56837532 + MSTA-int LTR MaLR 1 563 -1088 679 119 9 0 chr12 86949063 86949172 -56837283 + L1MA4A LINE L1 6188 6297 -6 2475 188 65 40 chr12 86949188 86949820 -56836635 + L1MB7 LINE L1 5333 5980 -204 739 223 73 9 chr12 86949822 86950186 -56836269 - MER67D LTR ERV1 0 514 125 1832 303 104 11 chr12 86950187 86951054 -56835401 - L2 LINE L2 -129 3184 2236 1758 317 47 42 chr12 86951143 86951553 -56834902 + HERV16 LTR ERVL 1927 2344 -2652 2391 86 0 0 chr12 86951553 86951857 -56834598 + AluY SINE Alu 1 304 -7 1758 317 47 42 chr12 86951857 86952250 -56834205 + HERV16 LTR ERVL 2344 2734 -2262 931 211 16 5 chr12 86952326 86952520 -56833935 - MLT1A1 LTR MaLR 0 365 170 21 36 0 0 chr12 86953435 86953463 -56832992 + AT_rich Low_complexity Low_complexity 1 28 0 4929 123 13 13 chr12 86955037 86955820 -56830635 - L1PB4 LINE L1 -1 6155 5373 22 56 0 0 chr12 86956351 86956387 -56830068 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 86956748 86956771 -56829684 + AT_rich Low_complexity Low_complexity 1 23 0 1904 133 38 3 chr12 86956891 86957207 -56829248 - L1PB4 LINE L1 -47 6109 5783 312 253 33 11 chr12 86957224 86957315 -56829140 - L1MC4 LINE L1 -1340 6702 6610 215 31 31 0 chr12 86957330 86957362 -56829093 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 3235 162 32 12 chr12 86957362 86958392 -56828063 - L1P5 LINE L1 -373 5783 4728 1760 197 26 51 chr12 86958390 86958701 -56827754 + L1 LINE L1 4020 4316 -1830 * 2168 95 20 0 chr12 86958701 86959005 -56827450 - AluY SINE Alu -1 310 1 1760 197 26 51 chr12 86959005 86959186 -56827269 + L1 LINE L1 4316 4500 -1646 285 343 118 0 chr12 86959188 86959366 -56827089 + MER69 DNA AcHobo 137 335 -2191 304 85 68 0 chr12 86959390 86959449 -56827006 + T-rich Low_complexity Low_complexity 3 65 0 661 179 0 22 chr12 86959461 86959595 -56826860 - L1PA11 LINE L1 0 6174 6044 31 58 0 0 chr12 86959993 86960045 -56826410 + AT_rich Low_complexity Low_complexity 1 52 0 29 47 0 0 chr12 86960614 86960657 -56825798 + AT_rich Low_complexity Low_complexity 1 43 0 358 280 160 45 chr12 86960772 86960972 -56825483 + MIR SINE MIR 29 251 -11 610 280 107 4 chr12 86961199 86961424 -56825031 + MIR SINE MIR 2 249 -13 192 125 0 0 chr12 86961637 86961669 -56824786 + (A)n Simple_repeat Simple_repeat 1 32 0 297 317 97 55 chr12 86961959 86962268 -56824187 + L2 LINE L2 1657 1978 -1336 268 307 93 29 chr12 86962470 86962610 -56823845 + L2 LINE L2 3164 3312 -1 232 313 41 54 chr12 86962751 86962898 -56823557 - L2 LINE L2 -6 3307 3163 28 0 0 0 chr12 86963218 86963246 -56823209 + AT_rich Low_complexity Low_complexity 1 28 0 2387 104 0 0 chr12 86963260 86963568 -56822887 + AluSq SINE Alu 1 308 -5 2210 85 0 25 chr12 86963625 86963942 -56822513 + AluY SINE Alu 1 309 -2 379 216 0 0 chr12 86964329 86964403 -56822052 + MER3 DNA MER1_type 37 110 -99 529 209 39 20 chr12 86964409 86964562 -56821893 + MER3 DNA MER1_type 2469 2624 0 627 69 0 69 chr12 86965061 86965162 -56821293 - L1P LINE L1 -5369 777 684 7714 20 0 1 chr12 86965162 86966641 -56819814 + L1PA3 LINE L1 4668 6152 -3 25 0 0 0 chr12 86967688 86967713 -56818742 + AT_rich Low_complexity Low_complexity 1 25 0 448 332 123 28 chr12 86967741 86968099 -56818356 + L2 LINE L2 2829 3220 -93 236 154 19 0 chr12 86968152 86968204 -56818251 + (CA)n Simple_repeat Simple_repeat 2 54 0 360 337 52 18 chr12 86968273 86968599 -56817856 - L1ME4a LINE L1 -237 5884 5548 24 32 0 0 chr12 86968668 86968699 -56817756 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr12 86968965 86968991 -56817464 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 86969025 86969057 -56817398 + AT_rich Low_complexity Low_complexity 1 32 0 2164 134 11 6 chr12 86969185 86969543 -56816912 - MER46B DNA MER2_type -1 235 1 1554 191 24 7 chr12 86969609 86969907 -56816548 + AluJo SINE Alu 1 303 -9 231 36 0 0 chr12 86970117 86970145 -56816310 + (TCTA)n Simple_repeat Simple_repeat 4 31 0 24 32 0 0 chr12 86970716 86970747 -56815708 + AT_rich Low_complexity Low_complexity 1 31 0 294 247 0 14 chr12 86971851 86971924 -56814531 - MIR SINE MIR -48 214 143 23 0 0 0 chr12 86973061 86973084 -56813371 + AT_rich Low_complexity Low_complexity 1 23 0 382 320 49 36 chr12 86973253 86973478 -56812977 + L1ME LINE L1 5562 5789 -332 338 324 0 0 chr12 86974328 86974430 -56812025 - MIR SINE MIR -102 160 59 212 307 0 27 chr12 86974470 86974545 -56811910 - MIR SINE MIR -18 244 172 3231 158 37 19 chr12 86974569 86975185 -56811270 - Tigger4(Zombi) DNA MER2_type -2 2729 2103 510 17 0 0 chr12 86975391 86975450 -56811005 + (TA)n Simple_repeat Simple_repeat 2 60 0 327 78 0 0 chr12 86975524 86975575 -56810880 + (TA)n Simple_repeat Simple_repeat 2 52 0 24 96 0 0 chr12 86975959 86976032 -56810423 + AT_rich Low_complexity Low_complexity 1 73 0 507 256 36 0 chr12 86976435 86976572 -56809883 - MLT1J2 LTR MaLR -308 142 1 434 265 94 30 chr12 86978169 86978350 -56808105 - MLT1F1 LTR MaLR -10 557 395 22 35 0 0 chr12 86978669 86978698 -56807757 + AT_rich Low_complexity Low_complexity 1 29 0 495 290 199 0 chr12 86979634 86979820 -56806635 - MIR SINE MIR -10 252 30 301 364 9 0 chr12 86980063 86980173 -56806282 - MIR SINE MIR -68 140 30 289 286 64 74 chr12 86980526 86980729 -56805726 + MLT1H LTR MaLR 222 422 -127 22 56 0 0 chr12 86981808 86981844 -56804611 + AT_rich Low_complexity Low_complexity 1 36 0 189 191 73 29 chr12 86981855 86981923 -56804532 - MIR SINE MIR -74 188 118 286 383 120 23 chr12 86982102 86982319 -56804136 - L2 LINE L2 -93 3179 2942 338 309 14 7 chr12 86983400 86983539 -56802916 + MER46C DNA MER2_type 2 141 -197 267 256 70 12 chr12 86983910 86983996 -56802459 - MLT1G1 LTR MaLR -447 148 58 1666 171 0 28 chr12 86985069 86985355 -56801100 + AluJo SINE Alu 3 280 -32 189 0 0 0 chr12 86985355 86985376 -56801079 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2129 96 34 0 chr12 86986886 86987179 -56799276 - AluSp SINE Alu -10 303 1 459 243 168 6 chr12 86988194 86988367 -56798088 - MIR SINE MIR -34 228 28 418 132 0 0 chr12 86988556 86988624 -56797831 - MLT2A2 LTR ERVL -385 68 1 11464 104 2 1 chr12 86988624 86990205 -56796250 - HERVL-A2 LTR ERVL 0 5654 4072 245 209 16 39 chr12 86990389 86990518 -56795937 + (TGGG)n Simple_repeat Simple_repeat 1 126 0 2074 89 3 92 chr12 86991540 86991877 -56794578 + AluSg SINE Alu 4 310 0 210 289 40 26 chr12 86993183 86993259 -56793196 + L2 LINE L2 3190 3266 -6 233 29 29 0 chr12 86995475 86995509 -56790946 + (TG)n Simple_repeat Simple_repeat 2 36 0 1175 206 25 21 chr12 86995719 86995957 -56790498 - MSTD LTR MaLR -2 394 156 196 348 22 0 chr12 86996069 86996158 -56790297 - MIR SINE MIR -132 130 40 466 314 290 14 chr12 86996579 86996945 -56789510 - L2 LINE L2 -38 3275 2809 670 337 80 28 chr12 86997033 86997457 -56788998 - L2 LINE L2 -777 2537 2092 392 157 48 0 chr12 86998653 86998736 -56787719 + L1MA7 LINE L1 6180 6266 -25 40 21 0 0 chr12 86998736 86998783 -56787672 + AT_rich Low_complexity Low_complexity 1 47 0 207 163 116 12 chr12 86999064 86999150 -56787305 + (TTAAA)n Simple_repeat Simple_repeat 4 98 0 410 291 194 33 chr12 87000070 87000499 -56785956 - L2 LINE L2 -954 2360 1863 447 291 8 31 chr12 87000511 87000638 -56785817 - L2 LINE L2 -1 3312 3189 21 57 0 0 chr12 87000710 87000745 -56785710 + AT_rich Low_complexity Low_complexity 1 35 0 23 40 0 0 chr12 87001229 87001254 -56785201 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr12 87001680 87001734 -56784721 + AT_rich Low_complexity Low_complexity 1 54 0 1176 185 5 5 chr12 87001734 87001945 -56784510 - MER2 DNA MER2_type -134 211 1 318 272 22 0 chr12 87001945 87002036 -56784419 - MER94 DNA DNA -41 93 1 250 256 56 32 chr12 87002656 87002781 -56783674 - MER65B LTR ERV1 -403 128 1 27 0 0 0 chr12 87003928 87003955 -56782500 + GC_rich Low_complexity Low_complexity 1 27 0 17471 205 23 45 chr12 87004129 87004855 -56781600 - L1P3 LINE L1 -1301 5160 4420 1678 101 9 0 chr12 87004855 87005083 -56781372 - AluSc SINE Alu -9 300 71 17471 205 23 45 chr12 87005083 87007418 -56779037 - L1P3 LINE L1 -2041 4420 2216 2706 26 0 0 chr12 87007418 87007724 -56778731 - AluYa5 SINE Alu -5 306 1 17471 205 23 45 chr12 87007724 87009080 -56777375 - L1P3 LINE L1 -4245 2216 832 708 300 21 12 chr12 87010086 87010329 -56776126 + MIR SINE MIR 2 246 -16 314 252 17 0 chr12 87010799 87010918 -56775537 + T-rich Low_complexity Low_complexity 4 124 0 25 0 0 0 chr12 87011838 87011863 -56774592 + AT_rich Low_complexity Low_complexity 1 25 0 313 198 74 0 chr12 87012018 87012099 -56774356 + L1ME4a LINE L1 5839 5925 -196 22 70 0 0 chr12 87012377 87012420 -56774035 + AT_rich Low_complexity Low_complexity 1 43 0 1057 73 20 0 chr12 87012672 87012823 -56773632 + L1MB1 LINE L1 6015 6168 0 185 366 134 0 chr12 87012846 87012988 -56773467 + MIR SINE MIR 47 207 -55 3677 230 90 8 chr12 87014002 87015774 -56770681 - L1MB8 LINE L1 0 6178 4249 224 343 19 9 chr12 87015810 87015915 -56770540 - L2 LINE L2 -573 2741 2636 1072 194 9 9 chr12 87016073 87016289 -56770166 - AluJo SINE Alu -16 296 81 22 0 0 0 chr12 87017160 87017182 -56769273 + AT_rich Low_complexity Low_complexity 1 22 0 434 278 73 49 chr12 87017395 87017820 -56768635 + L1M4 LINE L1 2110 2544 -3602 22 35 0 0 chr12 87017881 87017910 -56768545 + AT_rich Low_complexity Low_complexity 1 29 0 952 309 63 55 chr12 87020103 87020200 -56766255 - L2 LINE L2 -1 3312 3217 1665 83 13 4 chr12 87020200 87020428 -56766027 - MER30 DNA MER1_type 0 230 1 952 309 63 55 chr12 87020428 87020938 -56765517 - L2 LINE L2 -96 3217 2700 2304 289 105 57 chr12 87021113 87022069 -56764386 - L2 LINE L2 -527 2787 1757 1690 184 13 0 chr12 87022069 87022374 -56764081 + AluSc SINE Alu 1 309 0 2304 289 105 57 chr12 87022374 87022656 -56763799 - L2 LINE L2 -1557 1757 1490 217 224 61 0 chr12 87022813 87022862 -56763593 + L2 LINE L2 3258 3309 -4 181 405 60 9 chr12 87023007 87023123 -56763332 - MIR SINE MIR -67 141 20 2252 104 3 10 chr12 87023349 87023658 -56762797 - AluSq SINE Alu -6 307 1 29 0 0 0 chr12 87023889 87023918 -56762537 + AT_rich Low_complexity Low_complexity 1 29 0 2095 106 10 3 chr12 87024407 87024708 -56761747 - AluSx SINE Alu -9 303 1 200 332 105 0 chr12 87025492 87025597 -56760858 + MIR SINE MIR 40 153 -61 234 262 0 0 chr12 87028107 87028149 -56758306 + C-rich Low_complexity Low_complexity 1 42 0 288 322 124 21 chr12 87028841 87029074 -56757381 - L3 LINE CR1 -116 1461 1205 624 244 87 12 chr12 87029514 87029686 -56756769 - MER5A DNA MER1_type -4 185 1 195 42 0 0 chr12 87029731 87029755 -56756700 + (A)n Simple_repeat Simple_repeat 1 24 0 2365 97 20 6 chr12 87030033 87030384 -56756071 + MLT2A1 LTR ERVL 1 356 -88 1367 310 66 23 chr12 87030637 87031256 -56755199 + L2 LINE L2 1233 1878 -1436 537 305 51 41 chr12 87031563 87031858 -56754597 + MLT1I LTR MaLR 112 409 0 6153 92 14 4 chr12 87032364 87033552 -56752903 - HERVL LTR ERVL -2424 3230 1959 198 372 73 43 chr12 87033702 87033866 -56752589 - L2 LINE L2 -1422 1892 1724 311 333 24 16 chr12 87033962 87034088 -56752367 - L2 LINE L2 -2493 821 695 985 299 32 12 chr12 87034099 87034437 -56752018 + L2 LINE L2 2157 2501 -813 275 363 49 37 chr12 87034508 87034827 -56751628 + L2 LINE L2 2698 3016 -297 251 162 0 0 chr12 87035621 87035658 -56750797 + (CA)n Simple_repeat Simple_repeat 2 38 0 245 107 0 54 chr12 87035657 87035713 -56750742 + (GA)n Simple_repeat Simple_repeat 2 54 0 * 639 353 76 18 chr12 87036058 87036546 -56749909 + L3 LINE CR1 737 1252 -325 225 140 20 20 chr12 87036911 87036961 -56749494 - L1M1 LINE L1 -456 5847 5798 1109 27 20 7 chr12 87036982 87037130 -56749325 - MER41A LTR ERV1 -109 445 296 1275 92 0 0 chr12 87037130 87037314 -56749141 - MER41B LTR ERV1 -450 185 2 641 52 10 52 chr12 87037316 87037413 -56749042 - MER41B-int LTR ERV1 -1 5945 5853 226 114 0 0 chr12 87037413 87037448 -56749007 - L1M1 LINE L1 -636 5667 5633 1013 141 126 10 chr12 87037581 87037787 -56748668 + MER21A LTR ERV1 1 230 -701 2421 163 69 47 chr12 87037801 87038336 -56748119 + MER21A LTR ERV1 379 925 -6 315 258 21 43 chr12 87039151 87039244 -56747211 + L1MC4 LINE L1 6615 6705 -1337 27 49 0 0 chr12 87039317 87039358 -56747097 + AT_rich Low_complexity Low_complexity 1 41 0 261 57 0 0 chr12 87039372 87039407 -56747048 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 279 0 0 0 chr12 87039406 87039437 -56747018 + (GA)n Simple_repeat Simple_repeat 2 32 0 302 352 17 17 chr12 87039560 87039739 -56746716 + L2 LINE L2 1905 2083 -1231 283 192 40 40 chr12 87040012 87040111 -56746344 + L1ME3 LINE L1 1576 1674 -4722 575 306 78 34 chr12 87040165 87040577 -56745878 + L1ME3 LINE L1 1893 2322 -4074 744 283 141 32 chr12 87040896 87040929 -56745526 + L1ME3 LINE L1 3773 3801 -2414 2260 132 28 3 chr12 87040929 87041284 -56745171 + THE1B LTR MaLR 1 364 0 10203 113 33 17 chr12 87041284 87042839 -56743616 + THE1B-int LTR MaLR 1 1579 -1 2187 142 34 3 chr12 87042840 87043193 -56743262 + THE1B LTR MaLR 1 364 0 744 283 141 32 chr12 87043193 87043781 -56742674 + L1ME3 LINE L1 3800 4465 -1750 2504 193 71 20 chr12 87043795 87044939 -56741516 + L1MB3 LINE L1 5005 6251 -1 1587 269 93 26 chr12 87044923 87046471 -56739984 + L1ME3 LINE L1 4460 6102 -129 * 1760 192 0 25 chr12 87046765 87047082 -56739373 - AluJb SINE Alu -3 309 1 907 147 12 0 chr12 87047232 87047395 -56739060 - L1MA10 LINE L1 0 6334 6170 36 40 0 0 chr12 87048671 87048721 -56737734 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr12 87049826 87049861 -56736594 + AT_rich Low_complexity Low_complexity 1 35 0 452 276 25 14 chr12 87049981 87050151 -56736304 + MIR SINE MIR 6 174 -62 272 310 11 0 chr12 87050229 87050316 -56736139 + MLT1J2 LTR MaLR 72 159 -291 23 0 0 0 chr12 87050858 87050881 -56735574 + GC_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr12 87051557 87051601 -56734854 + AT_rich Low_complexity Low_complexity 1 44 0 1363 237 49 5 chr12 87051995 87052383 -56734072 + MLT1E2 LTR MaLR 1 405 -221 1135 113 4 61 chr12 87052528 87052775 -56733680 - L1PA15 LINE L1 -222 5943 5711 * 1351 129 9 5 chr12 87052774 87053027 -56733428 - L1MA7 LINE L1 -684 5482 5229 * 3262 177 9 6 chr12 87053026 87053665 -56732790 + L1MA7 LINE L1 5482 6122 -169 1351 188 0 16 chr12 87053777 87054033 -56732422 - L1PA12 LINE L1 -7181 400 149 621 265 59 32 chr12 87054033 87054252 -56732203 + MER69 DNA AcHobo 331 555 -671 184 59 59 0 chr12 87055495 87055529 -56730926 + A-rich Low_complexity Low_complexity 2 37 0 29 60 0 0 chr12 87055617 87055667 -56730788 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr12 87055727 87055756 -56730699 + AT_rich Low_complexity Low_complexity 1 29 0 407 243 93 41 chr12 87055760 87055994 -56730461 + L1MB8 LINE L1 5292 5534 -630 670 235 71 77 chr12 87056099 87056410 -56730045 + LTR27 LTR ERV1 328 636 0 585 284 32 37 chr12 87056415 87056752 -56729703 + L1ME3 LINE L1 5832 6170 0 660 207 172 0 chr12 87058557 87058731 -56727724 + MER3 DNA MER1_type 5 208 -1 186 43 0 0 chr12 87059674 87059697 -56726758 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr12 87059949 87059998 -56726457 + AT_rich Low_complexity Low_complexity 1 49 0 377 195 24 0 chr12 87060346 87060428 -56726027 - MIR SINE MIR 0 262 179 25 65 0 0 chr12 87060508 87060554 -56725901 + AT_rich Low_complexity Low_complexity 1 46 0 26 30 0 0 chr12 87062380 87062413 -56724042 + GC_rich Low_complexity Low_complexity 1 33 0 208 256 41 16 chr12 87062451 87062572 -56723883 + (CGGGG)n Simple_repeat Simple_repeat 4 127 0 7735 178 20 11 chr12 87062586 87064080 -56722375 - Tigger4(Zombi) DNA MER2_type -1224 1507 1 1025 243 110 23 chr12 87064310 87064701 -56721754 - MLT1D LTR MaLR -80 425 1 2331 176 24 33 chr12 87064950 87065502 -56720953 + L1MB8 LINE L1 5513 6059 -119 536 296 11 21 chr12 87066356 87066542 -56719913 + MLT1J LTR MaLR 236 419 -92 451 245 97 32 chr12 87068431 87068709 -56717746 - L1M4 LINE L1 -2679 4169 3874 298 271 24 0 chr12 87068721 87068806 -56717649 + MLT1A2 LTR MaLR 3 89 -285 * 1059 226 25 7 chr12 87068804 87069078 -56717377 + MER2 DNA MER2_type 67 345 0 317 223 47 88 chr12 87069103 87069251 -56717204 + L1MC4 LINE L1 7900 8041 -1 307 299 99 82 chr12 87071537 87071951 -56714504 - L1M4 LINE L1 -5901 948 528 1008 164 38 22 chr12 87072209 87072392 -56714063 + AluSg/x SINE Alu 104 289 -23 27 0 0 0 chr12 87075477 87075504 -56710951 + GC_rich Low_complexity Low_complexity 1 27 0 222 248 28 55 chr12 87075624 87075769 -56710686 + (CCGCG)n Simple_repeat Simple_repeat 2 142 0 2085 144 3 3 chr12 87125979 87126285 -56660170 + AluSx SINE Alu 1 306 -6 737 272 48 22 chr12 87126397 87126625 -56659830 + MIR SINE MIR 29 262 0 21 0 0 0 chr12 87126822 87126843 -56659612 + AT_rich Low_complexity Low_complexity 1 21 0 308 43 0 21 chr12 87126898 87126945 -56659510 + (CA)n Simple_repeat Simple_repeat 2 47 0 5592 124 6 20 chr12 87128123 87129033 -56657422 - L1MA5A LINE L1 0 6297 5401 714 281 68 42 chr12 87129609 87130272 -56656183 - L1MEc LINE L1 -4712 1684 1005 2410 223 47 19 chr12 87132117 87132647 -56653808 + REP3 LTR ERV 14 558 -4 210 75 0 57 chr12 87134740 87134793 -56651662 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 36 53 0 0 chr12 87135122 87135179 -56651276 + AT_rich Low_complexity Low_complexity 1 57 0 2322 146 28 3 chr12 87135779 87136170 -56650285 + MER57A LTR ERV1 1 401 -2 2866 174 24 47 chr12 87136818 87137500 -56648955 - L1MA10 LINE L1 -16 6318 5653 2924 207 47 4 chr12 87137509 87138268 -56648187 + L1 LINE L1 2806 3597 -2549 260 133 17 0 chr12 87138426 87138486 -56647969 + (TA)n Simple_repeat Simple_repeat 1 61 0 209 261 31 46 chr12 87139005 87139070 -56647385 + L2 LINE L2 3201 3264 -8 390 314 46 20 chr12 87139141 87139294 -56647161 + MIR SINE MIR 32 188 -74 345 348 29 43 chr12 87140717 87140855 -56645600 + L2 LINE L2 3159 3294 -19 307 319 22 22 chr12 87141146 87141281 -56645174 + MIR3 SINE MIR 68 202 -6 3363 110 15 14 chr12 87141331 87141849 -56644606 + L1PB2 LINE L1 5630 6148 -3 195 42 0 0 chr12 87141956 87141980 -56644475 + (TTTTTA)n Simple_repeat Simple_repeat 4 27 0 22 80 0 0 chr12 87141992 87142042 -56644413 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr12 87142581 87142609 -56643846 + AT_rich Low_complexity Low_complexity 1 28 0 1660 204 3 0 chr12 87142841 87143140 -56643315 - AluJb SINE Alu -11 301 2 7565 51 0 0 chr12 87143167 87144131 -56642324 - L1PA5 LINE L1 -2661 3485 2522 15436 38 2 0 chr12 87144131 87146797 -56639658 + L1PA5 LINE L1 3471 6145 -9 40 0 0 0 chr12 87146797 87146837 -56639618 + AT_rich Low_complexity Low_complexity 1 40 0 233 282 14 14 chr12 87146985 87147056 -56639399 + MLT1L LTR MaLR 1 71 -544 370 222 0 0 chr12 87147169 87147241 -56639214 + MLT1L LTR MaLR 218 289 -326 226 213 0 0 chr12 87147433 87147480 -56638975 + MLT1L LTR MaLR 561 607 -8 23 0 0 0 chr12 87147945 87147968 -56638487 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr12 87148420 87148456 -56637999 + AT_rich Low_complexity Low_complexity 1 36 0 1373 224 27 38 chr12 87148650 87149016 -56637439 - MLT1A1 LTR MaLR 0 365 4 327 49 0 0 chr12 87149285 87149326 -56637129 + (CA)n Simple_repeat Simple_repeat 2 42 0 343 253 0 0 chr12 87149576 87149651 -56636804 + MIR SINE MIR 172 246 -16 798 223 89 41 chr12 87149907 87150273 -56636182 - MLT1F1 LTR MaLR -4 563 122 289 224 82 35 chr12 87150337 87150422 -56636033 - MLT1F1 LTR MaLR -418 124 36 3065 70 15 1 chr12 87150989 87151675 -56634780 + L1P3 LINE L1 4987 5680 -474 * 4351 178 28 11 chr12 87151674 87152561 -56633894 - L1 LINE L1 -1677 4469 3568 23 54 0 0 chr12 87153266 87153303 -56633152 + AT_rich Low_complexity Low_complexity 1 37 0 7617 28 0 0 chr12 87153331 87154428 -56632027 - L1PA3 LINE L1 -3 6152 5058 1897 169 7 0 chr12 87155001 87155309 -56631146 - AluJb SINE Alu -2 310 1 366 349 52 26 chr12 87155741 87155970 -56630485 + MIR SINE MIR 20 254 -8 234 342 27 9 chr12 87156109 87156220 -56630235 + L2 LINE L2 1465 1577 -1737 411 200 0 0 chr12 87156246 87156316 -56630139 - FLAM_A SINE Alu -50 83 14 220 261 84 84 chr12 87156344 87156559 -56629896 + L2 LINE L2 1589 1803 -1511 414 290 35 40 chr12 87156651 87156936 -56629519 - L3 LINE CR1 -156 1421 1096 28 86 0 0 chr12 87156963 87157033 -56629422 + AT_rich Low_complexity Low_complexity 1 70 0 216 209 66 11 chr12 87157792 87157883 -56628572 + (TA)n Simple_repeat Simple_repeat 1 96 0 328 298 89 12 chr12 87158125 87158373 -56628082 - L1MEc LINE L1 -4825 1485 1219 355 281 24 0 chr12 87158451 87158533 -56627922 + MER63 DNA MER1_type 979 1062 0 1069 273 109 40 chr12 87158767 87159115 -56627340 - L1MEc LINE L1 -4879 1240 917 1748 179 7 3 chr12 87159115 87159412 -56627043 - AluJb SINE Alu -14 298 1 1069 273 109 40 chr12 87159412 87159683 -56626772 - L1MEc LINE L1 -5202 917 571 2262 84 13 3 chr12 87159683 87159982 -56626473 - AluY SINE Alu -9 302 1 1069 273 109 40 chr12 87159982 87160013 -56626442 - L1MEc LINE L1 -5548 571 544 365 308 158 59 chr12 87160241 87160628 -56625827 + MLT1K LTR MaLR 131 555 -33 308 330 0 17 chr12 87160900 87161018 -56625437 - L1MC4 LINE L1 -1339 6703 6588 944 236 95 52 chr12 87161032 87161359 -56625096 - MLT2C1 LTR ERVL -56 341 1 805 280 70 8 chr12 87161366 87161609 -56624846 + LTR16A LTR ERVL 108 365 -85 21 0 0 0 chr12 87161876 87161897 -56624558 + AT_rich Low_complexity Low_complexity 1 21 0 417 202 90 0 chr12 87162488 87162577 -56623878 - MER63 DNA MER1_type -334 728 6 250 125 89 18 chr12 87162592 87162648 -56623807 + L2 LINE L2 1578 1637 -1677 265 246 29 0 chr12 87163037 87163106 -56623349 + L2 LINE L2 2725 2795 -519 * 323 323 10 10 chr12 87163104 87163200 -56623255 + L2 LINE L2 3186 3281 -32 331 323 0 8 chr12 87163603 87163730 -56622725 - MIR SINE MIR -8 254 129 1647 171 0 4 chr12 87163756 87164030 -56622425 + AluJb SINE Alu 27 299 -13 270 0 0 0 chr12 87164033 87164063 -56622392 + (CATA)n Simple_repeat Simple_repeat 2 31 0 826 200 0 57 chr12 87164079 87164254 -56622201 - MLT2C1 LTR ERVL 0 397 233 4707 178 21 66 chr12 87164281 87164628 -56621827 - L1MA9 LINE L1 -1 6311 5950 1466 126 4 9 chr12 87164628 87164858 -56621597 - AluSc SINE Alu -7 302 74 4707 178 21 66 chr12 87164858 87166186 -56620269 - L1MA9 LINE L1 -362 5950 4699 2742 210 150 15 chr12 87166212 87167470 -56618985 - L1MCa LINE L1 -4256 2332 744 2347 52 0 0 chr12 87167482 87167771 -56618684 - L1PA5 LINE L1 0 6154 5866 1540 17 0 0 chr12 87167771 87167947 -56618508 + L1PA5 LINE L1 5701 5876 -278 2266 207 129 21 chr12 87167948 87168663 -56617792 - L1MCa LINE L1 -5292 852 1 447 201 0 0 chr12 87168817 87168951 -56617504 + (TA)n Simple_repeat Simple_repeat 1 134 0 335 310 0 17 chr12 87168951 87169067 -56617388 + L1MC4 LINE L1 6589 6702 -1340 312 153 14 83 chr12 87169003 87169075 -56617380 - L1MCa LINE L1 -4362 2064 1998 * 288 226 0 0 chr12 87169082 87169175 -56617280 + (TA)n Simple_repeat Simple_repeat 1 93 0 232 236 14 0 chr12 87169182 87169254 -56617201 - L1MCa LINE L1 -4359 2067 1995 603 229 9 0 chr12 87169266 87170038 -56616417 + (TA)n Simple_repeat Simple_repeat 1 779 0 371 231 0 6 chr12 87170083 87170239 -56616216 + (TA)n Simple_repeat Simple_repeat 2 156 0 314 225 14 0 chr12 87170241 87170312 -56616143 + L1MCa LINE L1 1996 2067 -4359 216 135 0 0 chr12 87170327 87170364 -56616091 + (TA)n Simple_repeat Simple_repeat 2 38 0 1202 193 136 31 chr12 87170459 87171086 -56615369 + LTR48 LTR ERV1 1 697 -10 362 313 154 15 chr12 87173522 87173723 -56612732 - MIR SINE MIR -19 243 15 210 225 0 0 chr12 87173870 87173910 -56612545 + (CA)n Simple_repeat Simple_repeat 1 40 0 3158 157 7 18 chr12 87174254 87174725 -56611730 - L1MC2 LINE L1 -355 5989 5523 2199 95 7 0 chr12 87174725 87175021 -56611434 + AluSp SINE Alu 1 298 -15 3158 157 7 18 chr12 87175021 87175102 -56611353 - L1MC2 LINE L1 -821 5523 5443 2759 79 99 7 chr12 87175480 87175521 -56610934 - MLT2A1 LTR ERVL -2 442 406 261 0 0 0 chr12 87175521 87175550 -56610905 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 375 23 0 0 chr12 87175549 87175593 -56610862 + (TG)n Simple_repeat Simple_repeat 1 44 0 2759 79 99 7 chr12 87175550 87175956 -56610499 - MLT2A1 LTR ERVL -38 406 1 20547 82 10 3 chr12 87175957 87179539 -56606916 - HERVL-A1-A1 LTR ERVL -1 5653 2096 2031 143 48 25 chr12 87179539 87179895 -56606560 - THE1B LTR MaLR 0 364 1 11267 115 1 0 chr12 87179895 87181473 -56604982 - THE1B-int LTR MaLR 0 1580 1 2001 137 48 28 chr12 87181473 87181830 -56604625 - THE1B LTR MaLR 0 364 1 20547 82 10 3 chr12 87181830 87183780 -56602675 - HERVL-A1-A1 LTR ERVL -3557 2097 1 3209 106 2 5 chr12 87183780 87184225 -56602230 - MLT2A1 LTR ERVL 0 444 1 1063 348 14 6 chr12 87184369 87184717 -56601738 - MLT1I LTR MaLR -46 363 13 451 145 0 0 chr12 87184962 87185031 -56601424 + AluJ/FLAM SINE Alu 3 71 -241 24 0 0 0 chr12 87185045 87185069 -56601386 + AT_rich Low_complexity Low_complexity 1 24 0 689 217 24 6 chr12 87185837 87186003 -56600452 + L1MC1 LINE L1 6165 6333 0 183 236 11 146 chr12 87186217 87186306 -56600149 - L2 LINE L2 0 3313 3237 207 284 34 34 chr12 87186896 87186984 -56599471 - L2 LINE L2 -1862 1452 1365 2194 110 0 0 chr12 87187247 87187548 -56598907 + AluY SINE Alu 1 301 -10 296 367 87 4 chr12 87187768 87187997 -56598458 + L2 LINE L2 2036 2283 -1031 293 235 135 71 chr12 87188003 87188127 -56598328 + MLT1K LTR MaLR 392 507 -81 2600 33 0 7 chr12 87188127 87188433 -56598022 + AluY SINE Alu 1 304 -7 1762 53 126 0 chr12 87188433 87188679 -56597776 - L1PA4 LINE L1 0 6155 5879 293 235 135 71 chr12 87188679 87188723 -56597732 + MLT1K LTR MaLR 506 572 -16 1902 147 0 3 chr12 87189219 87189530 -56596925 - AluSx SINE Alu 0 310 1 25 0 0 0 chr12 87189530 87189555 -56596900 + AT_rich Low_complexity Low_complexity 1 25 0 691 204 13 33 chr12 87189555 87189707 -56596748 - FRAM SINE Alu -21 155 7 33 43 0 0 chr12 87189839 87189886 -56596569 + AT_rich Low_complexity Low_complexity 1 47 0 22 80 0 0 chr12 87190381 87190431 -56596024 + AT_rich Low_complexity Low_complexity 1 50 0 2911 184 18 25 chr12 87190537 87191146 -56595309 - MER6A DNA MER2_type 0 605 1 271 347 41 48 chr12 87191224 87191371 -56595084 + MIR3 SINE MIR 8 153 -55 25 0 0 0 chr12 87191686 87191711 -56594744 + AT_rich Low_complexity Low_complexity 1 25 0 2107 118 0 3 chr12 87192414 87192710 -56593745 - AluSx SINE Alu -17 295 1 275 338 66 7 chr12 87193080 87193231 -56593224 - L2 LINE L2 -457 2857 2698 393 243 75 0 chr12 87193255 87193362 -56593093 - L2 LINE L2 0 3313 3199 212 354 49 62 chr12 87193402 87193546 -56592909 - L2 LINE L2 -671 2643 2502 388 294 92 0 chr12 87193747 87193866 -56592589 + MLT1H LTR MaLR 71 200 -349 521 306 38 0 chr12 87194316 87194476 -56591979 - MIR3 SINE MIR -3 205 40 341 287 21 0 chr12 87195993 87196087 -56590368 - MER5B DNA MER1_type -63 115 20 180 0 0 0 chr12 87196371 87196391 -56590064 + (A)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr12 87196616 87196663 -56589792 + AT_rich Low_complexity Low_complexity 1 47 0 2053 151 0 0 chr12 87196849 87197148 -56589307 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr12 87197156 87197186 -56589269 + AT_rich Low_complexity Low_complexity 1 30 0 268 378 47 14 chr12 87197303 87197451 -56589004 + MER5B DNA MER1_type 1 153 -25 2435 150 112 28 chr12 87197475 87197917 -56588538 - L1MC2 LINE L1 -33 6311 5817 2661 43 0 0 chr12 87197917 87198222 -56588233 - AluY SINE Alu -6 305 1 2435 150 112 28 chr12 87198222 87198307 -56588148 - L1MC2 LINE L1 -527 5817 5740 5634 224 91 23 chr12 87199016 87201793 -56584662 - L1MB8 LINE L1 0 6178 3208 640 294 102 23 chr12 87201801 87202359 -56584096 - L1M4b LINE L1 -3951 3187 2586 2371 257 45 17 chr12 87202618 87203793 -56582662 - L1M4b LINE L1 -4536 2423 1207 286 253 36 0 chr12 87204279 87204362 -56582093 - L1M4b LINE L1 -5900 959 874 3683 203 22 5 chr12 87204611 87205610 -56580845 + L1P4 LINE L1 4470 5486 -680 1068 165 35 20 chr12 87205767 87205967 -56580488 + MLT1E3 LTR MaLR 1 203 -421 2363 171 41 58 chr12 87205977 87206007 -56580448 - L1MB1 LINE L1 -333 5835 5806 2108 102 10 13 chr12 87206007 87206312 -56580143 + AluSx SINE Alu 1 304 -8 2363 171 41 58 chr12 87206312 87207204 -56579251 - L1MB1 LINE L1 -362 5806 4911 1697 189 3 0 chr12 87207205 87207527 -56578928 + L1MB1 LINE L1 5843 6165 -3 2376 231 20 58 chr12 87207566 87208314 -56578141 + L1MA9 LINE L1 5555 6274 -38 936 242 12 67 chr12 87208344 87208657 -56577798 + MLT1E1 LTR MaLR 332 654 0 232 184 20 0 chr12 87209190 87209239 -56577216 + (TG)n Simple_repeat Simple_repeat 2 51 0 4011 99 16 2 chr12 87209473 87209830 -56576625 - L1PB1 LINE L1 -1 6150 5780 447 68 0 0 chr12 87209830 87209889 -56576566 + (TG)n Simple_repeat Simple_repeat 2 60 0 4011 99 16 2 chr12 87209889 87210109 -56576346 - L1PB1 LINE L1 -371 5780 5565 2133 201 46 73 chr12 87210109 87210721 -56575734 - LTR9 LTR ERV1 -17 595 1 6918 182 15 22 chr12 87210721 87212204 -56574251 - L1P5 LINE L1 -588 5563 4102 2364 61 0 24 chr12 87212204 87212499 -56573956 + AluY SINE Alu 1 288 -23 6918 182 15 22 chr12 87212499 87212836 -56573619 - L1P5 LINE L1 -2049 4102 3764 * 8345 162 36 25 chr12 87212832 87215869 -56570586 + L1P5 LINE L1 1393 4462 -2400 968 266 102 41 chr12 87216539 87216930 -56569525 - MLT1E2 LTR MaLR -6 620 206 222 37 0 0 chr12 87216961 87216988 -56569467 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2456 81 102 5 chr12 87216988 87217360 -56569095 - LTR7 LTR ERV1 -42 408 1 2355 103 48 13 chr12 87217360 87217739 -56568716 - HERVH LTR ERV1 0 7713 7322 881 98 32 0 chr12 87217737 87217860 -56568595 - HERVH LTR ERV1 -1894 5819 5693 * 1607 169 0 0 chr12 87217860 87218120 -56568335 + HERVH LTR ERV1 4890 5149 -2564 493 143 0 0 chr12 87218121 87218205 -56568250 + HERVH LTR ERV1 5600 5683 -2030 3228 216 43 30 chr12 87218207 87219044 -56567411 - L1MC3 LINE L1 -16 7769 6922 1261 325 55 21 chr12 87220254 87220818 -56565637 + L2 LINE L2 2207 2789 -525 659 203 8 0 chr12 87220902 87221030 -56565425 + MLT1A2 LTR MaLR 241 369 -5 400 320 51 6 chr12 87221029 87221185 -56565270 - MLT1J LTR MaLR -348 163 1 * 2220 174 31 17 chr12 87221414 87221834 -56564621 - MSTB LTR MaLR 0 426 1 4269 171 28 20 chr12 87222194 87222287 -56564168 + L1MA9 LINE L1 4840 4931 -1381 1945 147 32 37 chr12 87222287 87222662 -56563793 + THE1C LTR MaLR 3 375 0 4269 171 28 20 chr12 87222662 87223790 -56562665 + L1MA9 LINE L1 4931 6075 -237 871 192 27 126 chr12 87223788 87224121 -56562334 + L1MC1 LINE L1 4005 4304 -1842 * 1781 193 34 0 chr12 87224146 87224472 -56561983 - MER2 DNA MER2_type -1 344 8 3676 200 50 10 chr12 87224475 87226000 -56560455 + L1MC1 LINE L1 4338 5933 -400 195 42 0 0 chr12 87226000 87226024 -56560431 + (TA)n Simple_repeat Simple_repeat 2 25 0 7217 41 7 1 chr12 87226024 87227480 -56558975 - L1PA5 LINE L1 -15 6139 4680 1966 198 25 2 chr12 87227489 87227884 -56558571 + L1MC1 LINE L1 5925 6328 -5 365 269 44 95 chr12 87227887 87228225 -56558230 + L1ME1 LINE L1 5810 6130 -36 * 462 266 19 13 chr12 87228106 87228264 -56558191 + L1MA10 LINE L1 6169 6327 -7 337 341 47 6 chr12 87228589 87228759 -56557696 - MIR3 SINE MIR -2 206 30 449 261 85 17 chr12 87230537 87230713 -56555742 - MLT1K LTR MaLR 0 588 401 2554 226 27 29 chr12 87230720 87230765 -56555690 - L1MC4a LINE L1 0 7808 7764 2203 153 19 8 chr12 87230765 87231125 -56555330 - THE1B LTR MaLR 0 364 1 2554 226 27 29 chr12 87231125 87231766 -56554689 - L1MC4a LINE L1 -44 7764 7121 3010 101 29 4 chr12 87231766 87232220 -56554235 - MER4C LTR ERV1 0 465 1 2554 226 27 29 chr12 87232220 87232263 -56554192 - L1MC4a LINE L1 -687 7121 7079 410 385 52 12 chr12 87232307 87232556 -56553899 - MLT1K LTR MaLR -240 348 90 180 326 61 0 chr12 87232813 87232862 -56553593 - L3b LINE CR1 -236 1347 1296 189 148 19 56 chr12 87232898 87232952 -56553503 + MIR SINE MIR 211 262 0 21 71 0 0 chr12 87232952 87232994 -56553461 + AT_rich Low_complexity Low_complexity 1 42 0 206 309 73 0 chr12 87233161 87233229 -56553226 - L3b LINE CR1 -308 1275 1203 23 78 0 0 chr12 87233368 87233419 -56553036 + AT_rich Low_complexity Low_complexity 1 51 0 32 57 0 0 chr12 87234026 87234079 -56552376 + AT_rich Low_complexity Low_complexity 1 53 0 1747 148 61 14 chr12 87235153 87235497 -56550958 - MER46B DNA MER2_type -1 235 1 234 241 0 0 chr12 87236774 87236832 -56549623 + (CA)n Simple_repeat Simple_repeat 1 58 0 1349 130 60 0 chr12 87236995 87237211 -56549244 - MER30 DNA MER1_type -1 229 1 423 212 7 82 chr12 87238060 87238206 -56548249 + L1MB5 LINE L1 6037 6171 -3 1599 182 42 70 chr12 87238429 87238830 -56547625 - MLT1B LTR MaLR 0 390 1 507 300 18 0 chr12 87238840 87239010 -56547445 + HERV16 LTR ERVL 4247 4419 -1066 706 147 0 0 chr12 87239017 87239126 -56547329 - THE1B LTR MaLR -19 345 237 6370 121 27 4 chr12 87239126 87240054 -56546401 - THE1B-int LTR MaLR -631 949 1 1923 138 6 38 chr12 87240054 87240373 -56546082 - THE1B LTR MaLR 0 364 56 269 32 0 0 chr12 87240930 87240961 -56545494 - THE1B LTR MaLR -324 31 1 1239 288 90 61 chr12 87240979 87241753 -56544702 + HERV16 LTR ERVL 4533 5329 -435 396 231 100 15 chr12 87242394 87242524 -56543931 + MIR SINE MIR 112 252 -10 626 338 54 38 chr12 87243112 87243693 -56542762 - L2 LINE L2 -1 3312 2726 2099 109 19 29 chr12 87244199 87244512 -56541943 + AluSx SINE Alu 1 310 -2 3473 121 11 21 chr12 87245054 87245614 -56540841 + MER41A LTR ERV1 1 554 0 389 93 0 0 chr12 87245819 87245873 -56540582 - Alu SINE Alu -1 301 248 274 243 28 37 chr12 87246935 87247042 -56539413 + Charlie8 DNA MER1_type 68 173 -2244 239 186 0 0 chr12 87247162 87247205 -56539250 + Charlie8 DNA MER1_type 1377 1419 -998 492 325 88 7 chr12 87247257 87247531 -56538924 + LTR16B LTR ERVL 1 296 -168 232 274 38 47 chr12 87247563 87247669 -56538786 + LTR16B LTR ERVL 360 464 0 473 128 18 28 chr12 87247850 87247959 -56538496 + GA-rich Low_complexity Low_complexity 3 110 0 1328 318 80 26 chr12 87248533 87249144 -56537311 + HERV16 LTR ERVL 635 1278 -3718 2634 322 46 34 chr12 87249166 87250657 -56535798 + HERV16 LTR ERVL 1975 3486 -1901 1146 371 43 17 chr12 87250667 87251428 -56535027 + HERV16 LTR ERVL 4161 4941 -823 654 285 152 28 chr12 87251765 87252088 -56534367 + L2 LINE L2 2951 3313 0 486 320 104 9 chr12 87252207 87252429 -56534026 - MIR SINE MIR -4 258 16 2536 68 0 0 chr12 87252883 87253193 -56533262 - AluY SINE Alu -1 310 1 195 42 0 0 chr12 87253608 87253632 -56532823 + (CA)n Simple_repeat Simple_repeat 1 24 0 2323 103 0 0 chr12 87253816 87254117 -56532338 + AluSg SINE Alu 1 301 -9 378 59 0 0 chr12 87254369 87254420 -56532035 - MADE1 DNA Mariner 0 80 30 1466 185 8 8 chr12 87254934 87255193 -56531262 + AluJb SINE Alu 27 285 -27 195 69 0 0 chr12 87255942 87255971 -56530484 + (TTA)n Simple_repeat Simple_repeat 3 31 0 7104 35 1 0 chr12 87255971 87256811 -56529644 - L1PA5 LINE L1 -18 6136 5296 2213 153 30 22 chr12 87257818 87258224 -56528231 - Tigger3(Golem) DNA MER2_type -2 3027 2619 2271 141 5 44 chr12 87258487 87258822 -56527633 - THE1C LTR MaLR 0 375 56 1788 165 32 49 chr12 87258822 87259192 -56527263 + THE1B LTR MaLR 1 364 0 2271 141 5 44 chr12 87259192 87259246 -56527209 - THE1C LTR MaLR -319 56 1 1141 151 82 129 chr12 87259246 87259611 -56526844 - L1MA10 LINE L1 -9 6325 5978 1798 151 55 30 chr12 87259611 87259975 -56526480 + THE1C LTR MaLR 1 373 -2 9468 130 43 24 chr12 87259980 87261522 -56524933 + THE1C-int LTR MaLR 4 1574 -6 1907 150 55 30 chr12 87261527 87261893 -56524562 + THE1C LTR MaLR 1 375 0 343 145 32 0 chr12 87261894 87261956 -56524499 - L1MA10 LINE L1 -187 5981 5918 247 143 0 0 chr12 87261984 87262026 -56524429 + L1MB1 LINE L1 5918 5959 -209 626 244 140 28 chr12 87262037 87262145 -56524310 - L1MA10 LINE L1 -260 5929 5834 228 67 0 0 chr12 87262145 87262175 -56524280 + (TA)n Simple_repeat Simple_repeat 1 30 0 626 244 140 28 chr12 87262175 87262316 -56524139 - L1MA10 LINE L1 -355 5834 5652 532 136 0 2 chr12 87262323 87262426 -56524029 - L1ME LINE L1 -530 5591 5493 782 311 64 32 chr12 87262534 87262942 -56523513 - HERVL LTR ERVL -2488 3166 2746 21 36 0 0 chr12 87263426 87263454 -56523001 + AT_rich Low_complexity Low_complexity 1 28 0 283 191 26 17 chr12 87263937 87264052 -56522403 + (TA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chr12 87264187 87264208 -56522247 + AT_rich Low_complexity Low_complexity 1 21 0 35 63 0 0 chr12 87264243 87264306 -56522149 + AT_rich Low_complexity Low_complexity 1 63 0 316 354 0 0 chr12 87265087 87265183 -56521272 + L2 LINE L2 3199 3294 -19 6180 180 23 16 chr12 87265638 87266874 -56519581 + L1PB4 LINE L1 3916 5182 -974 243 0 0 0 chr12 87266874 87266901 -56519554 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6180 180 23 16 chr12 87266901 87267881 -56518574 + L1PB4 LINE L1 5182 6153 -3 1431 297 64 122 chr12 87267882 87268348 -56518107 - L2 LINE L2 -1103 2211 1720 2137 70 11 7 chr12 87268348 87268634 -56517821 + AluY SINE Alu 1 287 -24 1431 297 64 122 chr12 87268634 87269866 -56516589 - L2 LINE L2 -1594 1720 611 889 230 224 27 chr12 87270105 87270436 -56516019 + MSTD LTR MaLR 1 396 0 827 179 6 13 chr12 87270553 87270709 -56515746 - FRAM SINE Alu -11 165 11 40 0 0 0 chr12 87270709 87270749 -56515706 + AT_rich Low_complexity Low_complexity 1 40 0 1892 177 19 27 chr12 87271052 87271420 -56515035 + MLT1A1 LTR MaLR 1 365 0 482 309 68 0 chr12 87271461 87271623 -56514832 - MLT1I LTR MaLR -4 405 233 2456 87 0 0 chr12 87272712 87273021 -56513434 - AluSc SINE Alu 0 309 1 386 226 9 0 chr12 87273294 87273400 -56513055 + G-rich Low_complexity Low_complexity 1 107 0 101 47 0 62 chr12 87273406 87273502 -56512953 + GC_rich Low_complexity Low_complexity 1 101 -158 180 0 0 0 chr12 87273502 87273522 -56512933 + (G)n Simple_repeat Simple_repeat 1 20 0 101 47 0 62 chr12 87273522 87273701 -56512754 + GC_rich Low_complexity Low_complexity 101 259 0 203 211 26 13 chr12 87273780 87273856 -56512599 + G-rich Low_complexity Low_complexity 3 79 0 255 122 0 0 chr12 87273894 87273943 -56512512 + (G)n Simple_repeat Simple_repeat 1 49 0 36 0 0 0 chr12 87273974 87274010 -56512445 + GC_rich Low_complexity Low_complexity 1 36 0 315 271 35 24 chr12 87274047 87274217 -56512238 + G-rich Low_complexity Low_complexity 3 174 0 * 352 266 36 7 chr12 87274123 87274262 -56512193 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 1162 138 0 0 chr12 87374754 87374928 -56411527 + AluSg/x SINE Alu 108 281 -31 2343 74 0 3 chr12 87375501 87375798 -56410657 + AluY SINE Alu 1 296 -15 2533 65 7 3 chr12 87375927 87376234 -56410221 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr12 87376234 87376256 -56410199 + (TA)n Simple_repeat Simple_repeat 2 23 0 2202 95 3 20 chr12 87377064 87377360 -56409095 + AluSx SINE Alu 7 297 -15 4663 44 0 9 chr12 87378402 87378942 -56407513 + L1PA6 LINE L1 5618 6152 -2 207 139 0 0 chr12 87379553 87379589 -56406866 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 465 287 161 4 chr12 87380672 87380898 -56405557 - MLT1K LTR MaLR -2 586 326 187 386 31 43 chr12 87381181 87381344 -56405111 - MIR SINE MIR -46 216 56 2306 89 0 3 chr12 87381765 87382058 -56404397 + AluSc SINE Alu 1 292 -17 502 232 55 39 chr12 87382112 87382131 -56404324 - MIR SINE MIR 0 262 245 2159 88 49 0 chr12 87382131 87382415 -56404040 + AluSx SINE Alu 3 300 -12 502 232 55 39 chr12 87382415 87382576 -56403879 - MIR SINE MIR -17 245 79 26 0 0 0 chr12 87382709 87382735 -56403720 + AT_rich Low_complexity Low_complexity 1 26 0 1316 139 4 37 chr12 87383083 87383328 -56403127 - AluY SINE Alu -12 299 63 239 193 0 18 chr12 87383343 87383400 -56403055 + T-rich Low_complexity Low_complexity 6 61 0 189 196 0 0 chr12 87383414 87383465 -56402990 + T-rich Low_complexity Low_complexity 1 51 0 1596 176 18 32 chr12 87384718 87385002 -56401453 + AluJo SINE Alu 1 280 -32 243 0 0 0 chr12 87385007 87385034 -56401421 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 880 182 47 0 chr12 87385044 87385214 -56401241 + L1MB5 LINE L1 5988 6165 -9 448 250 181 0 chr12 87385676 87385836 -56400619 - MER5A DNA MER1_type 0 189 1 2416 87 10 3 chr12 87386631 87386942 -56399513 - AluSq SINE Alu 0 313 1 1022 218 55 0 chr12 87387353 87387555 -56398900 - AluJo SINE Alu -97 215 3 226 279 71 84 chr12 87387560 87387714 -56398741 + MIR SINE MIR 100 251 -11 592 223 8 0 chr12 87388483 87388604 -56397851 - FLAM_C SINE Alu -11 122 1 2053 111 0 27 chr12 87389544 87389861 -56396594 - AluSx SINE Alu 0 312 1 214 178 0 0 chr12 87392566 87392611 -56393844 + A-rich Low_complexity Low_complexity 3 47 0 279 0 0 0 chr12 87394166 87394197 -56392258 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 217 0 0 chr12 87395769 87395829 -56390626 + A-rich Low_complexity Low_complexity 1 60 0 189 0 0 0 chr12 87396067 87396088 -56390367 + (A)n Simple_repeat Simple_repeat 1 21 0 2236 103 3 3 chr12 87397579 87397871 -56388584 - AluSx SINE Alu -20 292 1 234 349 23 12 chr12 87398334 87398420 -56388035 + L2 LINE L2 2932 3018 -254 2114 118 0 38 chr12 87398431 87398609 -56387846 - AluY SINE Alu -10 301 139 2709 29 0 0 chr12 87398609 87398920 -56387535 - AluYa5 SINE Alu 0 311 1 2114 118 0 38 chr12 87398920 87399054 -56387401 - AluY SINE Alu -172 139 1 27 0 0 0 chr12 87399189 87399216 -56387239 + AT_rich Low_complexity Low_complexity 1 27 0 381 277 0 0 chr12 87400221 87400322 -56386133 - MER94 DNA DNA -33 101 1 1400 89 5 5 chr12 87400672 87400862 -56385593 + AluSq SINE Alu 110 299 -14 1404 168 65 14 chr12 87401502 87401794 -56384661 - MLT1C LTR MaLR -1 466 160 395 281 166 28 chr12 87402073 87402290 -56384165 + MIR SINE MIR 4 250 -12 4696 127 144 80 chr12 87403196 87404548 -56381907 - pTR5 LTR ERV1 -133 1798 57 307 352 75 19 chr12 87404927 87405140 -56381315 - L2 LINE L2 -674 2640 2416 608 225 18 24 chr12 87405313 87405482 -56380973 + MER50 LTR ERV1 1 168 -566 2450 183 65 11 chr12 87405551 87406077 -56380378 + MER50 LTR ERV1 173 726 -8 4743 51 5 0 chr12 87406915 87407503 -56378952 - LTR10C LTR ERV1 0 591 1 2475 75 7 0 chr12 87407534 87407841 -56378614 - AluY SINE Alu -2 309 1 353 335 28 84 chr12 87407917 87408132 -56378323 - L2 LINE L2 -1 3271 3069 1851 169 77 29 chr12 87408527 87408941 -56377514 - Tigger2a DNA MER2_type 0 434 1 36 62 0 0 chr12 87411106 87411170 -56375285 + AT_rich Low_complexity Low_complexity 1 64 0 226 231 13 0 chr12 87412433 87412511 -56373944 + (TTA)n Simple_repeat Simple_repeat 1 79 0 188 215 0 108 chr12 87412640 87412673 -56373782 - L2 LINE L2 0 3313 3289 1960 126 42 55 chr12 87412673 87412984 -56373471 + THE1C LTR MaLR 1 308 -67 2160 87 30 7 chr12 87412984 87413282 -56373173 + AluSx SINE Alu 1 305 -7 1960 126 42 55 chr12 87413282 87413350 -56373105 + THE1C LTR MaLR 308 375 0 188 215 0 108 chr12 87413350 87413381 -56373074 - L2 LINE L2 -24 3289 3256 2316 90 3 3 chr12 87413843 87414142 -56372313 - AluSx SINE Alu -2 310 12 716 325 154 21 chr12 87415207 87415693 -56370762 - L3 LINE CR1 -79 1498 948 314 214 57 0 chr12 87415846 87415916 -56370539 - L2 LINE L2 -9 3263 3190 613 299 42 23 chr12 87416013 87416230 -56370225 - MIR SINE MIR -35 227 7 319 284 77 31 chr12 87416763 87416957 -56369498 - L2 LINE L2 -877 2437 2235 761 107 0 38 chr12 87417185 87417316 -56369139 - AluY SINE Alu 0 311 186 30 0 0 0 chr12 87417318 87417348 -56369107 + AT_rich Low_complexity Low_complexity 1 30 0 2156 78 0 7 chr12 87417348 87417629 -56368826 - AluY SINE Alu -14 297 19 27 0 0 0 chr12 87417679 87417706 -56368749 + AT_rich Low_complexity Low_complexity 1 27 0 306 340 21 0 chr12 87418724 87418821 -56367634 + L3 LINE CR1 1373 1471 -106 2402 89 0 3 chr12 87418990 87419304 -56367151 - AluSq SINE Alu 0 313 1 22 0 0 0 chr12 87420239 87420261 -56366194 + AT_rich Low_complexity Low_complexity 1 22 0 411 363 41 12 chr12 87421171 87421342 -56365113 - L3 LINE CR1 -80 1497 1322 353 341 61 0 chr12 87421360 87421492 -56364963 - L3 LINE CR1 -363 1214 1075 2374 96 0 13 chr12 87421529 87421841 -56364614 - AluSq SINE Alu -5 308 1 2209 136 57 30 chr12 87421860 87422374 -56364081 - MLT2A2 LTR ERVL 0 554 1 2203 115 3 13 chr12 87422397 87422709 -56363746 - AluSx SINE Alu -3 309 1 274 292 108 54 chr12 87422710 87422895 -56363560 - L3 LINE CR1 -564 1013 819 1440 207 70 0 chr12 87422923 87423193 -56363262 - AluJo SINE Alu -23 289 1 210 313 0 0 chr12 87423220 87423284 -56363171 - L3 LINE CR1 -769 808 745 339 152 91 0 chr12 87423499 87423565 -56362890 - MIR SINE MIR -94 168 97 196 200 44 22 chr12 87423594 87423639 -56362816 - L2 LINE L2 -4 3268 3223 2002 85 0 65 chr12 87423648 87423942 -56362513 + AluSg1 SINE Alu 24 298 -11 2902 138 46 2 chr12 87423999 87424519 -56361936 + L1MC1 LINE L1 5791 6333 0 21 0 0 0 chr12 87425427 87425448 -56361007 + AT_rich Low_complexity Low_complexity 1 21 0 2222 120 0 0 chr12 87425928 87426228 -56360227 - AluSx SINE Alu -12 300 1 224 250 0 18 chr12 87426465 87426521 -56359934 + L2 LINE L2 3214 3268 -4 2194 128 0 0 chr12 87426841 87427145 -56359310 + AluSx SINE Alu 1 304 -8 240 59 0 0 chr12 87427889 87427923 -56358532 + (CA)n Simple_repeat Simple_repeat 1 34 0 200 379 1 0 chr12 87429373 87429459 -56356996 - MIR SINE MIR -72 136 50 781 230 21 16 chr12 87429679 87429913 -56356542 - AluJb SINE Alu 0 354 120 2295 119 0 0 chr12 87429915 87430227 -56356228 - AluSx SINE Alu 0 312 1 1826 151 53 10 chr12 87430235 87430534 -56355921 - AluSx SINE Alu 0 312 1 21 0 0 0 chr12 87430693 87430714 -56355741 + AT_rich Low_complexity Low_complexity 1 21 0 182 219 0 0 chr12 87431605 87431637 -56354818 - MIR SINE MIR -174 88 57 292 324 95 45 chr12 87431950 87432332 -56354123 - L2 LINE L2 -168 3104 2709 229 264 0 0 chr12 87433695 87433748 -56352707 + L2 LINE L2 3257 3309 -4 180 0 0 0 chr12 87433899 87433919 -56352536 + (TGG)n Simple_repeat Simple_repeat 1 20 0 295 321 37 0 chr12 87436389 87436498 -56349957 - MER113 DNA MER1_type? -408 113 1 380 319 109 52 chr12 87436607 87436936 -56349519 - L3 LINE CR1 -109 1468 1121 1711 161 56 3 chr12 87437105 87437391 -56349064 - AluSx SINE Alu -11 301 1 318 309 96 40 chr12 87437582 87437831 -56348624 - L3 LINE CR1 -607 970 708 2589 195 8 20 chr12 87438459 87438956 -56347499 + MLT1D LTR MaLR 15 505 0 762 196 0 0 chr12 87439555 87439688 -56346767 + FLAM_A SINE Alu 1 133 0 180 333 13 0 chr12 87442368 87442446 -56344009 - MIR SINE MIR -12 250 172 186 103 0 0 chr12 87442992 87443021 -56343434 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2074 137 0 0 chr12 87443023 87443308 -56343147 - AluSx SINE Alu -27 285 1 231 337 31 0 chr12 87444341 87444439 -56342016 + MIR SINE MIR 38 138 -70 2003 151 16 47 chr12 87444827 87445210 -56341245 - MLT1B LTR MaLR -2 388 18 1990 93 0 0 chr12 87445368 87445614 -56340841 - AluSq SINE Alu -66 247 2 2110 155 6 6 chr12 87445941 87446277 -56340178 - MER1A DNA MER1_type -193 336 1 207 0 0 0 chr12 87446364 87446387 -56340068 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr12 87446642 87446671 -56339784 + AT_rich Low_complexity Low_complexity 1 29 0 2081 71 3 61 chr12 87447328 87447625 -56338830 + AluY SINE Alu 23 302 -9 624 250 31 62 chr12 87448579 87448821 -56337634 - MIR SINE MIR -26 236 4 383 196 28 122 chr12 87449348 87449509 -56336946 - MSTC LTR MaLR -214 151 1 2312 91 0 31 chr12 87449663 87449982 -56336473 - AluSx SINE Alu -3 309 1 256 322 151 7 chr12 87450108 87450260 -56336195 - MIR SINE MIR -14 248 75 296 328 23 6 chr12 87451255 87451429 -56335026 - L1ME3A LINE L1 -219 5951 5775 * 338 276 193 14 chr12 87451419 87451564 -56334891 + L1ME LINE L1 5481 5651 -511 202 266 53 64 chr12 87452010 87452104 -56334351 + MIR SINE MIR 103 195 -67 2202 104 7 10 chr12 87452774 87453083 -56333372 - AluSx SINE Alu -4 308 1 1822 144 14 14 chr12 87454675 87454967 -56331488 - AluJo SINE Alu -16 296 5 1378 94 0 69 chr12 87455262 87455490 -56330965 + AluSc SINE Alu 92 305 0 219 339 0 0 chr12 87455490 87455549 -56330906 - L2 LINE L2 -841 2473 2415 2104 130 3 0 chr12 87456539 87456881 -56329574 - AluSp SINE Alu 0 313 1 232 344 0 0 chr12 87456940 87457001 -56329454 + L2 LINE L2 3251 3311 -2 1546 138 52 55 chr12 87457034 87457381 -56329074 + MER4A LTR ERV1 1 346 -318 231 29 0 304 chr12 87457386 87457455 -56329000 + MER4A LTR ERV1 306 353 -311 577 89 236 32 chr12 87457520 87457643 -56328812 + MER4C LTR ERV1 300 447 -18 2149 128 0 0 chr12 87457834 87458124 -56328331 + AluSx SINE Alu 1 290 -22 395 279 144 18 chr12 87458231 87458666 -56327789 - L1 LINE L1 -2324 3822 3340 409 157 3 9 chr12 87459241 87459325 -56327130 + MSTA LTR MaLR 347 428 0 2220 103 7 7 chr12 87460003 87460305 -56326150 + AluSg SINE Alu 1 302 -8 511 124 41 0 chr12 87460314 87460411 -56326044 + GA-rich Low_complexity Low_complexity 2 102 0 2133 113 3 0 chr12 87461033 87461324 -56325131 - AluSx SINE Alu -20 292 1 479 239 0 0 chr12 87462069 87462178 -56324277 - FLAM_A SINE Alu -11 131 23 183 318 56 40 chr12 87462193 87462319 -56324136 + L2 LINE L2 3126 3253 -60 2313 107 0 0 chr12 87462342 87462640 -56323815 + AluSg SINE Alu 2 299 -11 237 208 0 0 chr12 87463222 87463274 -56323181 + (TAGG)n Simple_repeat Simple_repeat 1 52 0 586 242 95 0 chr12 87463801 87463991 -56322464 - MER3 DNA MER1_type 0 209 2 2374 90 0 0 chr12 87464873 87465173 -56321282 - AluSg SINE Alu -10 300 1 264 156 0 0 chr12 87465552 87465597 -56320858 + L1MC4 LINE L1 6659 6703 -1339 306 227 0 0 chr12 87465610 87465685 -56320770 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 253 188 0 0 chr12 87465689 87465737 -56320718 - MLT1J LTR MaLR -42 469 422 2094 124 7 0 chr12 87465755 87466045 -56320410 + AluSx SINE Alu 3 294 -18 369 274 98 74 chr12 87466091 87466416 -56320039 - MLT1J LTR MaLR -178 333 1 1666 189 7 4 chr12 87466583 87466864 -56319591 + AluJo SINE Alu 1 282 -30 1209 185 56 59 chr12 87467903 87468190 -56318265 + AluJo SINE Alu 1 286 -26 1859 103 7 48 chr12 87468415 87468706 -56317749 + AluSq SINE Alu 1 279 -34 8250 37 0 2 chr12 87468706 87469735 -56316720 + L1P LINE L1 2200 3226 -2920 386 263 30 30 chr12 87471426 87471562 -56314893 + MIR SINE MIR 20 154 -61 180 0 0 0 chr12 87472325 87472345 -56314110 + (TTG)n Simple_repeat Simple_repeat 2 21 0 250 282 47 24 chr12 87472811 87472896 -56313559 + MER5B DNA MER1_type 92 178 0 1976 162 3 0 chr12 87473041 87473350 -56313105 + AluJb SINE Alu 1 310 -2 439 255 166 51 chr12 87474555 87474790 -56311665 - MIR SINE MIR 0 262 1 351 0 0 0 chr12 87475165 87475204 -56311251 + (TG)n Simple_repeat Simple_repeat 2 40 0 355 318 9 27 chr12 87475312 87475422 -56311033 - L2 LINE L2 -18 3295 3188 740 209 73 36 chr12 87476300 87476520 -56309935 - MER46C DNA MER2_type -16 322 95 456 187 8 32 chr12 87476523 87476646 -56309809 - L1MB8 LINE L1 -1 6177 6058 333 0 0 0 chr12 87476697 87476734 -56309721 + (TG)n Simple_repeat Simple_repeat 2 38 0 363 283 47 29 chr12 87477688 87477816 -56308639 + MIR SINE MIR 5 136 -72 21 0 0 0 chr12 87477863 87477884 -56308571 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 87478378 87478409 -56308046 + AT_rich Low_complexity Low_complexity 1 31 0 438 208 21 0 chr12 87478468 87478564 -56307891 - MER58B DNA MER1_type 0 341 244 22 0 0 0 chr12 87478824 87478846 -56307609 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr12 87479383 87479413 -56307042 + (A)n Simple_repeat Simple_repeat 1 30 0 914 156 0 6 chr12 87479469 87479648 -56306807 + (TGG)n Simple_repeat Simple_repeat 1 178 0 198 270 184 43 chr12 87480283 87480446 -56306009 + MIR SINE MIR 67 252 -10 222 229 57 0 chr12 87481153 87481223 -56305232 + CT-rich Low_complexity Low_complexity 5 78 0 21 36 0 0 chr12 87481309 87481337 -56305118 + AT_rich Low_complexity Low_complexity 1 28 0 271 234 16 0 chr12 87481665 87481729 -56304726 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 350 257 9 48 chr12 87481739 87481844 -56304611 - L2 LINE L2 -28 3285 3185 578 202 10 0 chr12 87482347 87482451 -56304004 + FLAM_A SINE Alu 1 105 -37 1411 78 0 34 chr12 87482560 87482764 -56303691 - AluY SINE Alu -114 197 1 2270 116 0 0 chr12 87483458 87483760 -56302695 - AluSx SINE Alu -10 302 1 24 53 0 0 chr12 87484295 87484333 -56302122 + AT_rich Low_complexity Low_complexity 1 38 0 881 242 115 86 chr12 87484591 87485033 -56301422 - MLT1J LTR MaLR -37 474 20 439 320 35 29 chr12 87486340 87486512 -56299943 + MIR SINE MIR 56 228 -34 464 221 179 29 chr12 87486767 87486907 -56299548 + MER5A DNA MER1_type 9 169 -20 255 161 18 54 chr12 87486974 87487030 -56299425 + MER5A DNA MER1_type 41 94 -95 2468 71 0 0 chr12 87489424 87489720 -56296735 - AluSc SINE Alu -11 298 3 529 151 9 0 chr12 87489888 87489994 -56296461 - MER53 DNA DNA -70 119 13 2112 108 0 0 chr12 87490325 87490628 -56295827 - AluSg SINE Alu 0 303 1 240 294 157 7 chr12 87490644 87490797 -56295658 - MIR3 SINE MIR -32 176 1 186 353 83 23 chr12 87491202 87491335 -56295120 + L3b LINE CR1 1375 1515 -68 216 350 125 25 chr12 87494281 87494441 -56292014 - L2 LINE L2 -160 3112 2937 2249 82 13 3 chr12 87494850 87495153 -56291302 - AluSc SINE Alu -3 306 1 255 250 16 0 chr12 87495342 87495406 -56291049 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 343 262 9 47 chr12 87495416 87495523 -56290932 - L2 LINE L2 -28 3285 3183 745 197 0 0 chr12 87496018 87496145 -56290310 + FLAM_A SINE Alu 3 129 -4 282 259 98 18 chr12 87496210 87496322 -56290133 + MIR3 SINE MIR 54 174 -34 2052 130 51 0 chr12 87496535 87496850 -56289605 - MER1B DNA MER1_type -2 335 5 254 365 12 75 chr12 87496853 87497094 -56289361 + MIR SINE MIR 16 241 -21 22 0 0 0 chr12 87498132 87498154 -56288301 + AT_rich Low_complexity Low_complexity 1 22 0 2807 7 0 0 chr12 87499253 87499557 -56286898 - AluYa5 SINE Alu -7 304 1 221 288 0 55 chr12 87499863 87499936 -56286519 + L2 LINE L2 1198 1266 -2048 2196 106 0 0 chr12 87500058 87500341 -56286114 + AluSg SINE Alu 25 307 -3 3099 150 93 127 chr12 87501873 87502148 -56284307 - L1MC3 LINE L1 -11 7774 7491 1825 166 0 29 chr12 87502148 87502461 -56283994 - AluJb SINE Alu -8 304 1 3099 150 93 127 chr12 87502461 87502612 -56283843 - L1MC3 LINE L1 -294 7491 7336 1620 196 9 25 chr12 87502612 87502929 -56283526 - AluJb SINE Alu 0 312 1 3099 150 93 127 chr12 87502929 87503131 -56283324 - L1MC3 LINE L1 -449 7336 7129 230 264 14 0 chr12 87503131 87503203 -56283252 - MLT1F1 LTR MaLR -456 111 39 3099 150 93 127 chr12 87503203 87503579 -56282876 - L1MC3 LINE L1 -656 7129 6734 2235 102 3 0 chr12 87505054 87505371 -56281084 + AluSp SINE Alu 1 318 0 703 156 0 0 chr12 87505715 87505824 -56280631 - FLAM_A SINE Alu -14 128 20 2078 112 35 0 chr12 87506253 87506540 -56279915 + AluSg SINE Alu 1 297 -13 549 299 156 34 chr12 87507024 87507582 -56278873 - L1MD3 LINE L1 -1988 5820 5255 251 149 64 0 chr12 87507837 87507884 -56278571 + MER5B DNA MER1_type 1 50 -128 205 289 0 48 chr12 87508006 87508089 -56278366 + L2 LINE L2 3192 3270 -43 2228 90 3 0 chr12 87508574 87508864 -56277591 - AluSp SINE Alu -22 291 1 22 0 0 0 chr12 87508870 87508892 -56277563 + AT_rich Low_complexity Low_complexity 1 22 0 440 105 23 23 chr12 87508944 87509030 -56277425 - L1PA11 LINE L1 0 6174 6089 1112 180 90 0 chr12 87509141 87509341 -56277114 + AluJb SINE Alu 84 301 -11 2399 103 0 3 chr12 87510346 87510656 -56275799 + AluSc SINE Alu 1 309 0 636 286 168 43 chr12 87511126 87511657 -56274798 - L2 LINE L2 -667 2647 2051 1826 141 3 56 chr12 87512054 87512373 -56274082 - AluSx SINE Alu -10 302 1 2077 135 3 0 chr12 87514785 87515081 -56271374 - AluSx SINE Alu -15 297 1 912 277 113 35 chr12 87515714 87516165 -56270290 - MLT1J LTR MaLR -16 495 10 730 267 7 96 chr12 87516500 87516770 -56269685 + L2 LINE L2 2369 2614 -700 514 154 3 76 chr12 87516799 87517135 -56269320 + (TA)n Simple_repeat Simple_repeat 1 311 0 353 259 0 78 chr12 87517147 87517340 -56269115 + (TATG)n Simple_repeat Simple_repeat 3 180 0 443 236 11 57 chr12 87517350 87518078 -56268377 + (TA)n Simple_repeat Simple_repeat 1 694 0 403 249 0 78 chr12 87517602 87517795 -56268660 + (TATG)n Simple_repeat Simple_repeat 3 180 0 438 138 0 82 chr12 87518116 87518311 -56268144 + (TA)n Simple_repeat Simple_repeat 2 180 0 2099 107 4 0 chr12 87518337 87518617 -56267838 - AluSg1 SINE Alu -8 301 21 2608 253 72 18 chr12 87518666 87519592 -56266863 - L1MCb LINE L1 -5068 977 2 870 283 14 102 chr12 87519594 87519748 -56266707 + L2 LINE L2 2630 2796 -517 942 193 0 0 chr12 87519748 87519919 -56266536 + L1PA16 LINE L1 5996 6166 0 870 283 14 102 chr12 87519919 87520433 -56266022 + L2 LINE L2 2796 3223 -90 2351 58 10 7 chr12 87520436 87520745 -56265710 - AluY SINE Alu -1 310 1 189 74 0 0 chr12 87522004 87522031 -56264424 + (T)n Simple_repeat Simple_repeat 1 27 0 241 192 19 39 chr12 87522056 87522108 -56264347 + L2 LINE L2 3246 3296 -17 2568 68 0 0 chr12 87522695 87523006 -56263449 + AluSq SINE Alu 1 311 -2 2081 104 0 74 chr12 87523415 87523753 -56262702 + AluSq SINE Alu 1 313 0 2091 117 0 32 chr12 87524215 87524523 -56261932 + AluSg SINE Alu 1 298 -12 1849 109 49 0 chr12 87524865 87525162 -56261293 + AluSg SINE Alu 1 310 0 415 332 106 16 chr12 87525472 87525915 -56260540 - L1M4 LINE L1 -2246 3900 3418 2176 116 0 7 chr12 87526372 87526673 -56259782 - AluSg SINE Alu -11 299 1 3302 145 75 54 chr12 87527313 87527903 -56258552 - LTR1 LTR ERV1 0 785 174 2373 78 0 19 chr12 87527903 87528212 -56258243 - AluY SINE Alu -7 304 2 3302 145 75 54 chr12 87528212 87528379 -56258076 - LTR1 LTR ERV1 -611 174 12 2014 135 3 25 chr12 87528624 87528943 -56257512 - AluSx SINE Alu 0 312 1 1939 162 0 7 chr12 87529689 87529992 -56256463 + AluJb SINE Alu 1 301 -11 1227 196 0 17 chr12 87530832 87531067 -56255388 + MER8 DNA MER2_type 3 233 -6 2468 81 3 0 chr12 87531851 87532158 -56254297 - AluSp SINE Alu -5 308 1 594 222 0 37 chr12 87532946 87533081 -56253374 + FLAM_C SINE Alu 3 132 -11 34 24 0 0 chr12 87534337 87534378 -56252077 + AT_rich Low_complexity Low_complexity 1 41 0 196 278 201 47 chr12 87534425 87534594 -56251861 + MIR SINE MIR 10 204 -58 2205 71 4 4 chr12 87534625 87534934 -56251521 - AluY SINE Alu 0 309 1 1412 167 33 69 chr12 87534937 87535242 -56251213 - AluJb SINE Alu -18 294 1 22 70 0 0 chr12 87535691 87535734 -56250721 + AT_rich Low_complexity Low_complexity 1 43 0 423 56 0 0 chr12 87535748 87535802 -56250653 + (TC)n Simple_repeat Simple_repeat 1 54 0 2211 102 0 0 chr12 87535802 87536085 -56250370 - AluSg SINE Alu -27 283 1 600 247 90 44 chr12 87536102 87536393 -56250062 - MSTD LTR MaLR -54 334 41 349 345 68 35 chr12 87536528 87536967 -56249488 + L1MEc LINE L1 881 2142 -1207 236 237 31 21 chr12 87536988 87537085 -56249370 + A-rich Low_complexity Low_complexity 6 103 0 2927 154 28 9 chr12 87537127 87537690 -56248765 - L1MC3 LINE L1 -8 7777 7204 2169 111 26 61 chr12 87537692 87538069 -56248386 - THE1B LTR MaLR 0 364 1 2285 81 3 3 chr12 87538069 87538376 -56248079 - THE1B-int LTR MaLR 0 1580 1274 1941 111 4 4 chr12 87538376 87538646 -56247809 - AluSg SINE Alu -20 290 21 2858 254 72 18 chr12 87538695 87539621 -56246834 - L1MCb LINE L1 -5068 977 2 837 290 12 99 chr12 87539623 87539776 -56246679 + L2 LINE L2 2630 2795 -518 948 193 0 0 chr12 87539776 87539947 -56246508 + L1PA16 LINE L1 5996 6166 0 837 290 12 99 chr12 87539947 87540461 -56245994 + L2 LINE L2 2795 3223 -90 2479 55 0 6 chr12 87540464 87540776 -56245679 - AluY SINE Alu -1 310 1 189 74 0 0 chr12 87542035 87542062 -56244393 + (T)n Simple_repeat Simple_repeat 1 27 0 241 192 19 39 chr12 87542087 87542139 -56244316 + L2 LINE L2 3246 3296 -17 2339 107 0 3 chr12 87542726 87543036 -56243419 + AluSc SINE Alu 1 309 0 593 287 170 43 chr12 87543501 87544031 -56242424 - L2 LINE L2 -667 2647 2051 2200 105 3 0 chr12 87544877 87545194 -56241261 + AluSp SINE Alu 1 318 0 699 156 0 0 chr12 87545536 87545645 -56240810 - FLAM_A SINE Alu -14 128 20 1925 106 42 7 chr12 87546080 87546364 -56240091 + AluSc SINE Alu 1 294 -15 568 306 147 47 chr12 87546833 87547391 -56239064 - L1ME3 LINE L1 -325 5837 5255 250 149 64 0 chr12 87547646 87547693 -56238762 + MER5B DNA MER1_type 1 50 -128 439 255 166 51 chr12 87548810 87549045 -56237410 - MIR SINE MIR 0 262 1 369 0 0 0 chr12 87549420 87549461 -56236994 + (TG)n Simple_repeat Simple_repeat 2 42 0 355 318 9 27 chr12 87549569 87549679 -56236776 - L2 LINE L2 -18 3295 3188 22 0 0 0 chr12 87550458 87550480 -56235975 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr12 87550493 87550534 -56235921 + (TA)n Simple_repeat Simple_repeat 1 41 0 228 67 0 0 chr12 87551047 87551077 -56235378 + (A)n Simple_repeat Simple_repeat 1 30 0 944 150 0 6 chr12 87551148 87551328 -56235127 + (TGG)n Simple_repeat Simple_repeat 1 179 0 456 91 0 0 chr12 87551344 87551410 -56235045 + (TGG)n Simple_repeat Simple_repeat 3 68 0 1878 116 6 88 chr12 87551825 87552144 -56234311 - AluSx SINE Alu -19 293 1 192 40 0 0 chr12 87553051 87553076 -56233379 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1853 117 3 7 chr12 87553079 87553361 -56233094 - AluY SINE Alu -30 281 1 1261 186 33 72 chr12 87553364 87553670 -56232785 - AluJb SINE Alu -18 294 1 2281 113 0 0 chr12 87554150 87554176 -56232279 - AluSg SINE Alu -1 309 284 468 51 0 0 chr12 87554176 87554235 -56232220 + (TC)n Simple_repeat Simple_repeat 2 60 0 2281 113 0 0 chr12 87554235 87554517 -56231938 - AluSg SINE Alu -25 285 1 1307 208 77 35 chr12 87554534 87554862 -56231593 - MSTD LTR MaLR -54 334 4 2314 222 117 4 chr12 87554878 87555530 -56230925 - MSTD-int LTR MaLR -15 1720 2 21 36 0 0 chr12 87555614 87555642 -56230813 + AT_rich Low_complexity Low_complexity 1 28 0 327 236 118 12 chr12 87556786 87556919 -56229536 + MIR SINE MIR 114 262 0 27 0 0 0 chr12 87556923 87556950 -56229505 + AT_rich Low_complexity Low_complexity 1 27 0 1595 153 14 47 chr12 87557277 87557552 -56228903 + AluJo SINE Alu 1 266 -46 182 218 0 18 chr12 87557938 87557993 -56228462 + T-rich Low_complexity Low_complexity 1 54 0 451 291 62 29 chr12 87558516 87559111 -56227344 - L1ME LINE L1 -527 5594 4978 401 255 0 9 chr12 87559207 87559313 -56227142 - L1ME LINE L1 -1545 4601 4497 949 214 91 23 chr12 87559567 87559981 -56226474 - MER90 LTR ERV1 0 614 66 762 304 121 42 chr12 87560141 87560850 -56225605 + L2 LINE L2 2560 3313 0 2074 165 133 15 chr12 87560921 87561388 -56225067 + Tigger1 DNA MER2_type 1 522 -1896 * 10675 145 9 14 chr12 87561386 87561441 -56225014 + Tigger1 DNA MER2_type 626 680 -1738 2289 77 13 3 chr12 87561441 87561740 -56224715 - AluSc SINE Alu -7 302 1 10675 145 9 14 chr12 87561740 87563485 -56222970 + Tigger1 DNA MER2_type 680 2417 -1 249 337 158 0 chr12 87564103 87564293 -56222162 + MIR SINE MIR 37 256 -6 460 214 143 77 chr12 87564474 87564520 -56221935 - MIR SINE MIR -1 261 219 1193 146 116 49 chr12 87564520 87564818 -56221637 - AluJb SINE Alu 0 316 1 460 214 143 77 chr12 87564818 87564966 -56221489 - MIR SINE MIR -43 219 53 1639 194 3 3 chr12 87566381 87566670 -56219785 - AluJo SINE Alu -23 289 1 602 316 33 51 chr12 87566988 87567323 -56219132 - MLT1K LTR MaLR -17 571 243 284 268 0 14 chr12 87567730 87567801 -56218654 + Charlie8 DNA MER1_type 3 72 -2345 28 29 0 0 chr12 87568020 87568055 -56218400 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 87568780 87568801 -56217654 + AT_rich Low_complexity Low_complexity 1 21 0 314 293 81 10 chr12 87569575 87569674 -56216781 - MIR SINE MIR -133 129 24 5597 52 13 3 chr12 87569689 87570406 -56216049 - L1PA7 LINE L1 0 6154 5431 373 348 65 20 chr12 87571955 87572248 -56214207 + L1M4 LINE L1 3742 4047 -2099 191 288 82 0 chr12 87572256 87572329 -56214126 + L2 LINE L2 3181 3259 -54 1847 203 80 30 chr12 87572592 87573030 -56213425 - MLT1C LTR MaLR -7 460 1 396 40 0 0 chr12 87573163 87573213 -56213242 + (TG)n Simple_repeat Simple_repeat 2 51 0 * 699 12 0 0 chr12 87573212 87573292 -56213163 + (TA)n Simple_repeat Simple_repeat 1 80 0 2321 98 10 0 chr12 87573388 87573694 -56212761 - AluSx SINE Alu -3 309 1 574 310 83 79 chr12 87574585 87575497 -56210958 - L1M LINE L1 -747 5399 4514 2426 63 13 0 chr12 87575497 87575798 -56210657 - AluSp SINE Alu -8 305 1 574 310 83 79 chr12 87575798 87575975 -56210480 - L1M LINE L1 -1632 4514 4339 535 225 0 0 chr12 87576649 87576760 -56209695 - FLAM_C SINE Alu -14 129 19 227 217 22 0 chr12 87577575 87577621 -56208834 + AluJ/monomer SINE Alu 4 50 -252 205 292 108 25 chr12 87578137 87578257 -56208198 - L2 LINE L2 -16 3297 3168 265 362 59 21 chr12 87578411 87578722 -56207733 + L2 LINE L2 2761 3091 -222 206 261 157 52 chr12 87579322 87579437 -56207018 - MIR SINE MIR -118 144 18 28 0 0 0 chr12 87579477 87579505 -56206950 + AT_rich Low_complexity Low_complexity 1 28 0 241 261 0 15 chr12 87580118 87580183 -56206272 + T-rich Low_complexity Low_complexity 1 64 0 299 311 52 49 chr12 87580706 87581031 -56205424 - L1ME LINE L1 -527 5594 5269 325 211 0 0 chr12 87582515 87582572 -56203883 - MER30 DNA MER1_type 0 230 174 315 324 60 34 chr12 87583834 87584004 -56202451 - MIR SINE MIR -52 210 34 2188 61 0 10 chr12 87585251 87585547 -56200908 + AluYb8 SINE Alu 1 293 -25 238 306 117 34 chr12 87585654 87585919 -56200536 - HAL1 LINE L1 -1419 1088 802 338 361 91 55 chr12 87586121 87586670 -56199785 - HAL1 LINE L1 -1873 634 66 535 324 92 57 chr12 87586819 87587350 -56199105 - L1MEd LINE L1 -5550 569 20 22 70 0 0 chr12 87589304 87589347 -56197108 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr12 87589823 87589852 -56196603 + AT_rich Low_complexity Low_complexity 1 29 0 233 295 0 0 chr12 87590300 87590361 -56196094 - MER117 DNA MER1_type -120 77 17 190 355 9 37 chr12 87590432 87590539 -56195916 - MIR SINE MIR -66 142 39 270 269 200 41 chr12 87591000 87591145 -56195310 - MIR SINE MIR -21 241 74 210 328 79 57 chr12 87591204 87591381 -56195074 - MIR SINE MIR -26 236 56 1205 136 33 42 chr12 87591491 87591751 -56194704 - THE1B LTR MaLR -125 250 1 5868 148 9 16 chr12 87591751 87592059 -56194396 - THE1B-int LTR MaLR 0 1580 1271 1869 144 0 0 chr12 87592059 87592351 -56194104 - AluY SINE Alu -19 292 1 5868 148 9 16 chr12 87592351 87593018 -56193437 - THE1B-int LTR MaLR -309 1271 612 2152 73 0 0 chr12 87593365 87593651 -56192804 - L1PA4 LINE L1 -11 6144 5859 2536 146 46 2 chr12 87594514 87594952 -56191503 + MSTB2 LTR MaLR 1 457 0 190 306 71 0 chr12 87595072 87595157 -56191298 + MIR SINE MIR 97 187 -75 31 58 0 0 chr12 87595261 87595313 -56191142 + AT_rich Low_complexity Low_complexity 1 52 0 708 194 8 0 chr12 87595827 87595951 -56190504 - FLAM_A SINE Alu -8 125 1 191 247 37 86 chr12 87595964 87596045 -56190410 + L2 LINE L2 3196 3272 0 1871 126 67 0 chr12 87596397 87596682 -56189773 - AluSx SINE Alu -8 304 1 23 68 0 0 chr12 87597554 87597598 -56188857 + AT_rich Low_complexity Low_complexity 1 44 0 239 379 97 0 chr12 87598409 87598533 -56187922 - L2 LINE L2 0 3272 3137 281 326 139 39 chr12 87598641 87598944 -56187511 - L2 LINE L2 -885 2429 2067 2056 89 65 0 chr12 87598944 87599236 -56187219 + AluY SINE Alu 1 311 0 281 326 139 39 chr12 87599236 87599370 -56187085 - L2 LINE L2 -1247 2067 1948 379 283 77 120 chr12 87600648 87600973 -56185482 + L2 LINE L2 2996 3306 -7 2396 69 0 3 chr12 87601377 87601683 -56184772 - AluY SINE Alu -6 305 1 2480 27 40 3 chr12 87601971 87602271 -56184184 - AluY SINE Alu 0 311 1 1585 196 7 10 chr12 87602726 87603027 -56183428 + AluJo SINE Alu 1 300 -12 28 0 0 0 chr12 87604115 87604143 -56182312 + AT_rich Low_complexity Low_complexity 1 28 0 238 265 155 39 chr12 87604177 87604316 -56182139 + MIR SINE MIR 13 163 -45 294 285 116 47 chr12 87605097 87605269 -56181186 + MIR SINE MIR 53 236 -26 1766 122 6 97 chr12 87605942 87606263 -56180192 - AluSx SINE Alu -20 292 1 34 0 0 0 chr12 87606962 87606996 -56179459 + AT_rich Low_complexity Low_complexity 1 34 0 243 61 0 0 chr12 87607151 87607184 -56179271 + (CA)n Simple_repeat Simple_repeat 2 34 0 2085 115 0 10 chr12 87607197 87607370 -56179085 - AluSx SINE Alu -19 293 123 192 40 0 0 chr12 87607370 87607395 -56179060 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2085 115 0 10 chr12 87607395 87607516 -56178939 - AluSx SINE Alu -189 123 2 457 229 14 49 chr12 87607560 87607704 -56178751 - MLT1J LTR MaLR -2 509 371 1165 180 23 14 chr12 87609725 87609942 -56176513 - MER20 DNA MER1_type 0 219 1 4779 229 38 33 chr12 87610695 87611105 -56175350 + L1PA15-16 LINE L1 2655 3062 -3787 1840 154 14 14 chr12 87611105 87611398 -56175057 - AluSx SINE Alu -19 293 1 4779 229 38 33 chr12 87611398 87612721 -56173734 + L1PA15-16 LINE L1 3062 4393 -2456 446 260 0 10 chr12 87612725 87612829 -56173626 + FLAM_C SINE Alu 1 103 -40 8684 211 28 18 chr12 87612931 87613493 -56172962 + L1PA16 LINE L1 3130 3685 -2481 1569 194 33 7 chr12 87613493 87613797 -56172658 + AluJo SINE Alu 1 312 0 8684 211 28 18 chr12 87613797 87616215 -56170240 + L1PA16 LINE L1 3685 6160 -6 21 0 0 0 chr12 87616230 87616251 -56170204 + AT_rich Low_complexity Low_complexity 1 21 0 641 258 42 6 chr12 87616401 87616568 -56169887 + MIR SINE MIR 39 211 -51 312 70 0 0 chr12 87616605 87616648 -56169807 + (TTA)n Simple_repeat Simple_repeat 2 44 0 305 359 39 0 chr12 87616925 87617053 -56169402 + MIR SINE MIR 20 152 -110 204 212 186 53 chr12 87617192 87617305 -56169150 + L2 LINE L2 3167 3294 -19 23 33 0 0 chr12 87617985 87618015 -56168440 + AT_rich Low_complexity Low_complexity 1 30 0 188 395 67 46 chr12 87618315 87618811 -56167644 - L2 LINE L2 -1260 2054 1549 522 0 0 0 chr12 87619199 87619257 -56167198 + (TA)n Simple_repeat Simple_repeat 2 59 0 421 249 18 55 chr12 87621316 87621481 -56164974 + MER103 DNA DNA 2 160 -6 32 57 0 0 chr12 87622771 87622824 -56163631 + AT_rich Low_complexity Low_complexity 1 53 0 216 281 62 42 chr12 87623238 87623334 -56163121 + MIR3 SINE MIR 98 195 -13 22 0 0 0 chr12 87623695 87623717 -56162738 + AT_rich Low_complexity Low_complexity 1 22 0 444 289 104 25 chr12 87625505 87625706 -56160749 + MIR SINE MIR 31 247 -15 2548 14 0 7 chr12 87625744 87626039 -56160416 - AluYb8 SINE Alu -25 293 1 251 346 108 38 chr12 87626476 87626661 -56159794 - MIR3 SINE MIR -6 202 5 852 125 0 0 chr12 87629493 87629613 -56156842 + FLAM_C SINE Alu 1 120 -23 3000 163 119 16 chr12 87629966 87630606 -56155849 - MER39 LTR ERV1 0 707 2 274 61 0 0 chr12 87630795 87630828 -56155627 - U2 snRNA snRNA -155 33 1 24 0 0 0 chr12 87631031 87631055 -56155400 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 87631296 87631318 -56155137 + AT_rich Low_complexity Low_complexity 1 22 0 216 204 23 0 chr12 87631465 87631509 -56154946 + (CA)n Simple_repeat Simple_repeat 2 46 0 262 277 123 42 chr12 87632529 87632839 -56153616 + L1M4 LINE L1 4496 4830 -1316 249 385 33 0 chr12 87633722 87633844 -56152611 - MIR3 SINE MIR -33 175 50 5264 150 40 21 chr12 87633873 87635502 -56150953 - L1 LINE L1 -3277 4288 2627 199 313 124 46 chr12 87637353 87637570 -56148885 + MIR SINE MIR 3 236 -26 272 269 200 41 chr12 87637629 87637774 -56148681 + MIR SINE MIR 74 241 -21 187 373 9 27 chr12 87638245 87638355 -56148100 + MIR SINE MIR 47 154 -108 228 279 0 0 chr12 87638413 87638474 -56147981 + MER117 DNA MER1_type 17 77 -120 201 176 0 0 chr12 87638597 87638631 -56147824 + (TTA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr12 87638921 87638950 -56147505 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 87640114 87640149 -56146306 + AT_rich Low_complexity Low_complexity 1 35 0 42 36 0 0 chr12 87640416 87640472 -56145983 + AT_rich Low_complexity Low_complexity 1 56 0 1658 171 24 0 chr12 87640472 87640759 -56145696 - AluJb SINE Alu -18 294 1 243 399 91 5 chr12 87641034 87641232 -56145223 + MIR SINE MIR 11 225 -37 189 0 0 0 chr12 87641246 87641267 -56145188 + (ATG)n Simple_repeat Simple_repeat 1 21 0 308 83 0 0 chr12 87641743 87641791 -56144664 + L1MA2 LINE L1 6234 6281 -23 268 206 15 0 chr12 87642155 87642223 -56144232 + MER116 DNA Mariner 7 75 -5 181 378 94 0 chr12 87642224 87642351 -56144104 - MIR SINE MIR -104 158 20 1940 127 14 0 chr12 87642581 87642857 -56143598 + AluSx SINE Alu 33 312 0 761 281 85 55 chr12 87642864 87643395 -56143060 + L1MEd LINE L1 20 566 -5553 467 373 83 47 chr12 87643603 87644096 -56142359 + HAL1 LINE L1 126 636 -1871 335 281 118 35 chr12 87644291 87644604 -56141851 + HAL1 LINE L1 796 1134 -1373 342 316 75 11 chr12 87646437 87646607 -56139848 - MIR SINE MIR -37 171 34 2246 121 0 0 chr12 87648383 87648690 -56137765 - AluSg SINE Alu -3 307 1 1541 136 18 11 chr12 87648726 87649005 -56137450 + Tigger2 DNA MER2_type 2 282 -2436 516 210 10 0 chr12 87649022 87649122 -56137333 + Tigger2 DNA MER2_type 2618 2718 0 725 249 18 58 chr12 87649161 87649491 -56136964 - MER83C LTR ERV1 -10 363 47 1410 156 91 18 chr12 87649562 87649838 -56136617 - AluSg SINE Alu -11 299 4 255 61 0 0 chr12 87650734 87650767 -56135688 + (CA)n Simple_repeat Simple_repeat 2 34 0 458 230 151 7 chr12 87651202 87651341 -56135114 - AluJb SINE Alu -13 299 141 374 132 0 15 chr12 87652563 87652631 -56133824 + (TCTCCC)n Simple_repeat Simple_repeat 4 70 0 186 207 0 0 chr12 87652630 87652688 -56133767 + (TA)n Simple_repeat Simple_repeat 1 58 0 * 345 24 0 0 chr12 87652715 87652757 -56133698 + (TG)n Simple_repeat Simple_repeat 1 42 0 552 100 0 0 chr12 87652757 87652837 -56133618 + (TA)n Simple_repeat Simple_repeat 1 80 0 2862 149 32 4 chr12 87654306 87654864 -56131591 - L1MC3 LINE L1 -8 7777 7204 2177 111 26 61 chr12 87654866 87655243 -56131212 - THE1B LTR MaLR 0 364 1 9284 106 8 25 chr12 87655243 87655550 -56130905 - THE1B-int LTR MaLR 0 1580 1270 2203 110 0 0 chr12 87655550 87655842 -56130613 - AluY SINE Alu -19 292 1 9284 106 8 25 chr12 87655842 87656763 -56129692 - THE1B-int LTR MaLR -310 1270 376 2242 116 10 0 chr12 87656763 87657073 -56129382 + AluSp SINE Alu 1 313 0 9284 106 8 25 chr12 87657073 87657271 -56129184 - THE1B-int LTR MaLR -1204 376 176 1579 223 73 6 chr12 87657332 87657799 -56128656 - L1 LINE L1 -2438 3708 3211 2342 248 16 45 chr12 87657941 87658825 -56127630 - L1PA13 LINE L1 -4412 2385 1500 297 0 0 0 chr12 87658884 87658917 -56127538 + (T)n Simple_repeat Simple_repeat 1 33 0 861 94 255 122 chr12 87659002 87659154 -56127301 + AluSg1 SINE Alu 11 141 -168 1552 113 0 50 chr12 87659154 87659393 -56127062 + AluSg/x SINE Alu 84 310 0 861 94 255 122 chr12 87659393 87659495 -56126960 + AluSg1 SINE Alu 141 299 -10 730 335 50 32 chr12 87659932 87660434 -56126021 - L1PA13 LINE L1 -6195 592 82 828 242 9 0 chr12 87660540 87660751 -56125704 - AluSq SINE Alu -9 304 92 383 253 0 0 chr12 87660761 87660860 -56125595 - AluSq/x SINE Alu -169 133 35 180 0 0 0 chr12 87660976 87660996 -56125459 + (C)n Simple_repeat Simple_repeat 1 20 0 396 0 0 0 chr12 87660997 87661041 -56125414 + (A)n Simple_repeat Simple_repeat 1 44 0 4672 242 55 25 chr12 87661099 87663823 -56122632 + L1PA13 LINE L1 1500 4343 -2454 1316 85 0 0 chr12 87665028 87665193 -56121262 - AluSp SINE Alu -5 308 144 1768 177 44 0 chr12 87665197 87665491 -56120964 - AluSx SINE Alu -5 307 1 615 253 67 6 chr12 87665491 87665669 -56120786 - MLT1D LTR MaLR -312 193 5 2410 80 0 0 chr12 87665725 87666025 -56120430 - AluSg SINE Alu -10 300 1 2282 104 7 0 chr12 87666025 87666323 -56120132 - AluSx SINE Alu -11 301 1 693 127 16 16 chr12 87666543 87666669 -56119786 - AluSg/x SINE Alu 0 312 187 241 246 36 73 chr12 87666813 87666854 -56119601 + MIR SINE MIR 157 198 -64 568 246 6 17 chr12 87666854 87667033 -56119422 + MER104 DNA MER2_type 1 177 -3 241 246 36 73 chr12 87667033 87667101 -56119354 + MIR SINE MIR 198 262 0 216 0 0 0 chr12 87667253 87667277 -56119178 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2128 103 0 11 chr12 87667279 87667561 -56118894 - AluSg SINE Alu -31 279 1 1196 210 77 35 chr12 87667578 87667906 -56118549 - MSTD LTR MaLR -52 334 4 2151 227 88 6 chr12 87667922 87668433 -56118022 - MSTD-int LTR MaLR -15 1720 1168 608 203 23 0 chr12 87668446 87668574 -56117881 - MSTD-int LTR MaLR -1603 132 2 21 36 0 0 chr12 87668658 87668686 -56117769 + AT_rich Low_complexity Low_complexity 1 28 0 596 222 0 37 chr12 87670447 87670582 -56115873 - FLAM_C SINE Alu -11 132 3 2210 110 0 3 chr12 87671370 87671669 -56114786 + AluSx SINE Alu 1 298 -14 2323 105 0 6 chr12 87671838 87672153 -56114302 + AluSp SINE Alu 1 313 0 2439 81 0 10 chr12 87672841 87673150 -56113305 - AluSx SINE Alu -6 306 1 1597 153 0 108 chr12 87673152 87673342 -56113113 - AluJo SINE Alu -5 297 157 1782 145 43 0 chr12 87673342 87673618 -56112837 + AluJb SINE Alu 1 288 -24 1597 153 0 108 chr12 87673618 87673760 -56112695 - AluJo SINE Alu -145 157 1 503 172 0 10 chr12 87674648 87674747 -56111708 - AluSg/x SINE Alu -10 302 205 2170 128 0 7 chr12 87674773 87675077 -56111378 - AluSx SINE Alu -10 302 1 682 233 140 8 chr12 87675113 87675349 -56111106 - L1ME1 LINE L1 -5 6161 5895 509 262 6 17 chr12 87675349 87675521 -56110934 - AluJb SINE Alu -2 310 141 2379 115 0 0 chr12 87675952 87676264 -56110191 - AluSx SINE Alu 0 312 1 282 200 0 0 chr12 87676267 87676327 -56110128 - L1ME1 LINE L1 -345 5821 5762 582 15 0 0 chr12 87677684 87677751 -56108704 + (TTCTC)n Simple_repeat Simple_repeat 2 68 0 2098 117 7 0 chr12 87677751 87678034 -56108421 - AluSx SINE Alu -27 285 1 369 145 0 0 chr12 87679251 87679313 -56107142 + (TA)n Simple_repeat Simple_repeat 2 63 0 306 250 0 0 chr12 87679313 87679381 -56107074 - L1MC4 LINE L1 -1339 6703 6636 2365 88 0 3 chr12 87679385 87679691 -56106764 - AluSg SINE Alu -2 308 4 264 312 55 18 chr12 87679762 87679871 -56106584 + MIR3 SINE MIR 91 203 -5 26 57 0 0 chr12 87680404 87680439 -56106016 + AT_rich Low_complexity Low_complexity 1 35 0 293 326 22 17 chr12 87680612 87680790 -56105665 - MLT1K LTR MaLR 0 588 437 1288 148 50 20 chr12 87680900 87681197 -56105258 + MER33 DNA MER1_type 18 323 -1 61 42 0 0 chr12 87681477 87681549 -56104906 + GC_rich Low_complexity Low_complexity 1 72 0 301 352 11 22 chr12 87681575 87681927 -56104528 + CT-rich Low_complexity Low_complexity 1 348 0 305 273 91 0 chr12 87683479 87683589 -56102866 + MIR SINE MIR 91 210 -52 23 0 0 0 chr12 87685074 87685097 -56101358 + GC_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr12 87685155 87685184 -56101271 + GC_rich Low_complexity Low_complexity 1 29 0 523 282 148 64 chr12 87686239 87686921 -56099534 - L1M2 LINE L1 -5612 1237 594 744 105 21 91 chr12 87687734 87687802 -56098653 - MER5A DNA MER1_type -56 133 79 1693 200 0 3 chr12 87687802 87688102 -56098353 - AluJo SINE Alu -13 299 1 744 105 21 91 chr12 87688102 87688176 -56098279 - MER5A DNA MER1_type -110 79 1 586 250 5 15 chr12 87688256 87688452 -56098003 + LTR33 LTR ERVL 328 521 0 250 204 0 0 chr12 87688799 87688853 -56097602 + MLT1C LTR MaLR 61 114 -353 1666 194 4 0 chr12 87688872 87689151 -56097304 - AluJo SINE Alu -32 280 1 857 236 73 8 chr12 87689173 87689432 -56097023 + MLT1C LTR MaLR 192 467 0 233 148 0 37 chr12 87690217 87690271 -56096184 + (TCTCCC)n Simple_repeat Simple_repeat 4 55 0 413 316 6 25 chr12 87690278 87690436 -56096019 + C-rich Low_complexity Low_complexity 5 159 0 815 215 77 19 chr12 87690778 87691038 -56095417 - ORSL DNA AcHobo 0 275 1 216 0 0 0 chr12 87691099 87691123 -56095332 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2009 106 8 0 chr12 87691123 87691388 -56095067 - AluSx SINE Alu -29 283 17 400 313 109 47 chr12 87692040 87692360 -56094095 - L1ME LINE L1 -460 5661 5322 189 353 169 11 chr12 87693327 87693511 -56092944 - L2 LINE L2 -219 3053 2841 29 0 0 0 chr12 87693990 87694019 -56092436 + GC_rich Low_complexity Low_complexity 1 29 0 392 303 9 35 chr12 87695108 87695471 -56090984 + CT-rich Low_complexity Low_complexity 1 353 0 401 369 3 16 chr12 87695758 87696078 -56090377 - L1PA13 LINE L1 -4897 1890 1575 396 0 0 0 chr12 87696211 87696255 -56090200 + (T)n Simple_repeat Simple_repeat 1 44 0 1027 136 154 101 chr12 87696331 87696491 -56089964 + AluSx SINE Alu 2 185 -117 1570 113 0 23 chr12 87696491 87696712 -56089743 + AluSg/x SINE Alu 86 301 -11 1027 136 154 101 chr12 87696712 87696837 -56089618 + AluSx SINE Alu 185 302 0 262 256 16 64 chr12 87697065 87697190 -56089265 - L1PA13 LINE L1 -5271 1516 1398 982 340 36 32 chr12 87697270 87697859 -56088596 - L1PA13 LINE L1 -6195 592 2 764 226 9 44 chr12 87697870 87698009 -56088446 - L1MCb LINE L1 -2801 3763 3621 4543 34 33 22 chr12 87698009 87698591 -56087864 + L1PA6 LINE L1 5563 6150 -4 764 226 9 44 chr12 87698591 87698852 -56087603 - L1MCb LINE L1 -2943 3621 3393 2661 231 106 24 chr12 87698871 87699570 -56086885 - L1MCb LINE L1 -4114 2450 1810 560 76 13 0 chr12 87699570 87699649 -56086806 - MADE1 DNA Mariner 0 80 1 2661 231 106 24 chr12 87699649 87701080 -56085375 - L1MCb LINE L1 -4754 1810 41 1787 148 4 37 chr12 87701227 87701619 -56084836 - Charlie3 DNA MER1_type 0 2712 1 2959 147 22 6 chr12 87701688 87702177 -56084278 + LOR1a LTR ERV1 1 497 0 2044 138 0 0 chr12 87702316 87702622 -56083833 - AluSq SINE Alu 0 306 1 687 244 104 41 chr12 87702739 87702960 -56083495 + MIR SINE MIR 26 260 -2 205 269 58 0 chr12 87703390 87703442 -56083013 + L2 LINE L2 3256 3310 -3 200 338 166 0 chr12 87703583 87703722 -56082733 + L2 LINE L2 3106 3267 -5 917 208 0 0 chr12 87705639 87705817 -56080638 - AluSg/x SINE Alu -1 309 132 2126 101 10 0 chr12 87705817 87706114 -56080341 - AluSq SINE Alu -1 312 13 449 292 112 30 chr12 87706329 87706562 -56079893 - MIR SINE MIR -1 261 10 227 279 0 44 chr12 87708068 87708136 -56078319 + L2 LINE L2 3249 3313 0 910 239 34 13 chr12 87708222 87708461 -56077994 + MIR SINE MIR 19 262 0 228 273 202 0 chr12 87708782 87708881 -56077574 + MER94 DNA DNA 1 119 -15 303 97 32 16 chr12 87709491 87709553 -56076902 + (TA)n Simple_repeat Simple_repeat 1 63 0 209 337 179 11 chr12 87710711 87710984 -56075471 + L2 LINE L2 1705 2023 -1291 397 354 156 29 chr12 87711415 87711794 -56074661 + L2 LINE L2 2841 3267 -5 26 30 0 0 chr12 87712552 87712585 -56073870 + AT_rich Low_complexity Low_complexity 1 33 0 498 300 150 89 chr12 87712836 87712939 -56073516 + L2 LINE L2 2366 2461 -853 943 191 0 0 chr12 87712939 87713091 -56073364 + FRAM SINE Alu 4 155 -11 498 300 150 89 chr12 87713091 87713367 -56073088 + L2 LINE L2 2461 2768 -546 431 222 40 0 chr12 87713379 87713478 -56072977 + U6 snRNA snRNA 3 105 -2 200 33 0 33 chr12 87713586 87713616 -56072839 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 474 300 152 46 chr12 87714379 87714899 -56071556 - L1ME4a LINE L1 -225 5896 5322 1075 148 4 55 chr12 87715568 87715804 -56070651 + L1MA4A LINE L1 6068 6291 -12 22 0 0 0 chr12 87715804 87715826 -56070629 + AT_rich Low_complexity Low_complexity 1 22 0 1759 156 4 4 chr12 87716463 87716739 -56069716 + AluSx SINE Alu 1 276 -36 186 43 0 0 chr12 87716756 87716779 -56069676 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 298 154 26 0 chr12 87716911 87716989 -56069466 + (TA)n Simple_repeat Simple_repeat 1 80 0 2015 239 79 49 chr12 87717093 87717812 -56068643 - MER21B LTR ERV1 -104 759 19 355 232 0 37 chr12 87717834 87717916 -56068539 - MER21B LTR ERV1 -773 90 12 29 78 0 0 chr12 87717916 87717980 -56068475 + AT_rich Low_complexity Low_complexity 1 64 0 333 0 0 0 chr12 87718259 87718296 -56068159 + (TG)n Simple_repeat Simple_repeat 1 37 0 977 203 0 32 chr12 87718940 87719157 -56067298 + MER6B DNA MER2_type 1 210 0 1096 176 131 33 chr12 87719873 87720179 -56066276 - L1MC2 LINE L1 -1 6343 6008 197 308 192 33 chr12 87720187 87720307 -56066148 - MIR SINE MIR -122 140 2 261 0 0 0 chr12 87720668 87720697 -56065758 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1320 125 49 27 chr12 87720764 87720988 -56065467 - MER30 DNA MER1_type 0 230 2 202 298 0 0 chr12 87721959 87722016 -56064439 + A-rich Low_complexity Low_complexity 4 60 0 342 0 0 0 chr12 87723812 87723850 -56062605 + (TA)n Simple_repeat Simple_repeat 1 38 0 2147 101 0 57 chr12 87724098 87724415 -56062040 - AluSq SINE Alu -14 299 1 21 0 0 0 chr12 87724577 87724598 -56061857 + AT_rich Low_complexity Low_complexity 1 21 0 264 312 55 18 chr12 87724848 87724957 -56061498 - MIR3 SINE MIR -5 203 91 2365 88 0 3 chr12 87725028 87725334 -56061121 + AluSg SINE Alu 4 308 -2 306 250 0 0 chr12 87725338 87725406 -56061049 + L1MC4 LINE L1 6636 6703 -1339 369 145 0 0 chr12 87725406 87725468 -56060987 + (TA)n Simple_repeat Simple_repeat 2 63 0 387 342 190 21 chr12 87725747 87726194 -56060261 - L2 LINE L2 -222 3091 2561 181 317 100 17 chr12 87726212 87726332 -56060123 + L2 LINE L2 3168 3297 -16 192 212 0 121 chr12 87726966 87727032 -56059423 + MIR3 SINE MIR 111 168 -40 240 277 138 43 chr12 87727741 87727835 -56058620 - L2 LINE L2 -31 3241 3139 24 53 0 0 chr12 87727910 87727948 -56058507 + AT_rich Low_complexity Low_complexity 1 38 0 188 306 71 0 chr12 87728052 87728137 -56058318 - MIR SINE MIR -75 187 97 2556 146 46 2 chr12 87728257 87728695 -56057760 - MSTB2 LTR MaLR 0 457 1 2474 25 0 0 chr12 87729558 87729844 -56056611 + L1PA4 LINE L1 5859 6144 -11 2339 98 0 3 chr12 87730482 87730787 -56055668 - AluSq SINE Alu -9 304 1 24 53 0 0 chr12 87730995 87731033 -56055422 + AT_rich Low_complexity Low_complexity 1 38 0 382 272 103 38 chr12 87731047 87731231 -56055224 - MIR SINE MIR -1 261 66 329 350 0 44 chr12 87731669 87731806 -56054649 - MIR SINE MIR -112 150 20 2353 81 7 3 chr12 87732229 87732538 -56053917 - AluY SINE Alu -1 310 1 204 267 230 50 chr12 87732863 87733024 -56053431 + MIR SINE MIR 60 249 -13 28 0 0 0 chr12 87733037 87733065 -56053390 + AT_rich Low_complexity Low_complexity 1 28 0 266 156 0 0 chr12 87735062 87735107 -56051348 + L1ME3A LINE L1 6027 6071 -99 184 400 90 20 chr12 87735230 87735330 -56051125 + L2 LINE L2 3138 3244 -28 527 255 226 31 chr12 87735834 87736200 -56050255 - L2 LINE L2 -308 3005 2531 1021 181 83 0 chr12 87737218 87737262 -56049193 + MER50 LTR ERV1 1 40 -694 384 22 0 0 chr12 87737262 87737307 -56049148 + (CA)n Simple_repeat Simple_repeat 1 45 0 1021 181 83 0 chr12 87737307 87737478 -56048977 + MER50 LTR ERV1 40 234 -500 * 1576 161 4 7 chr12 87737476 87737749 -56048706 + MER50 LTR ERV1 433 704 -30 902 204 17 11 chr12 87737858 87738039 -56048416 + MER5A DNA MER1_type 1 182 -7 271 272 204 0 chr12 87738386 87738489 -56047966 - MER94 DNA DNA 0 134 11 2059 114 0 0 chr12 87740243 87740523 -56045932 - AluSx SINE Alu -32 280 1 5165 125 8 3 chr12 87740742 87741518 -56044937 - L1PA15 LINE L1 -32 6133 5354 1395 107 26 39 chr12 87742734 87742967 -56043488 - MER30 DNA MER1_type 0 230 1 326 115 0 33 chr12 87743792 87743853 -56042602 - L1MD2 LINE L1 -16 6343 6285 376 335 29 12 chr12 87745462 87745635 -56040820 + MLT1I LTR MaLR 5 180 -229 392 291 61 14 chr12 87745671 87745819 -56040636 + MLT1I LTR MaLR 255 409 0 189 181 0 36 chr12 87746132 87746215 -56040240 + (TA)n Simple_repeat Simple_repeat 1 80 0 323 283 82 99 chr12 87746627 87746920 -56039535 - LTR67 LTR ERVL -256 301 14 339 25 0 0 chr12 87747260 87747300 -56039155 + (TG)n Simple_repeat Simple_repeat 2 41 0 275 349 27 13 chr12 87747323 87747472 -56038983 - MIR SINE MIR -1 261 111 27 29 0 0 chr12 87747687 87747721 -56038734 + AT_rich Low_complexity Low_complexity 1 34 0 271 299 190 15 chr12 87748426 87748563 -56037892 - MER5A DNA MER1_type -16 173 13 21 0 0 0 chr12 87749355 87749376 -56037079 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 87751271 87751299 -56035156 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 87753227 87753255 -56033200 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr12 87753478 87753502 -56032953 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 184 283 0 0 chr12 87754192 87754238 -56032217 - L2 LINE L2 0 3272 3227 1008 195 201 18 chr12 87754479 87754818 -56031637 - MER39 LTR ERV1 0 707 307 271 327 89 0 chr12 87754803 87754904 -56031551 - MER39 LTR ERV1 -574 133 24 * 397 204 270 22 chr12 87755004 87755141 -56031314 - MIR SINE MIR 0 262 92 365 231 319 6 chr12 87755268 87755428 -56031027 - L2 LINE L2 -1 3312 3103 429 69 17 0 chr12 87756198 87756256 -56030199 - 5S rRNA rRNA -31 90 32 262 309 105 21 chr12 87758485 87758676 -56027779 - L2 LINE L2 -1040 2274 2068 28 29 0 0 chr12 87760247 87760282 -56026173 + AT_rich Low_complexity Low_complexity 1 35 0 14381 189 39 11 chr12 87760282 87762705 -56023750 - L1PB1 LINE L1 -8 6859 4507 2430 68 0 10 chr12 87762705 87763012 -56023443 - AluY SINE Alu -7 304 1 14381 189 39 11 chr12 87763012 87765993 -56020462 - L1PB1 LINE L1 -2360 4507 1297 2705 230 68 41 chr12 87766006 87766949 -56019506 - L1PB1 LINE L1 -5890 973 6 285 293 57 0 chr12 87768050 87768173 -56018282 + Charlie8 DNA MER1_type 116 245 -2172 608 201 45 13 chr12 87768536 87768676 -56017779 - MER31B LTR ERV1 0 466 322 640 234 63 64 chr12 87768676 87769073 -56017382 + MER34 LTR ERV1 1 603 -104 2237 110 0 3 chr12 87769127 87769426 -56017029 - AluSc SINE Alu -9 300 3 234 0 0 0 chr12 87769436 87769462 -56016993 + (T)n Simple_repeat Simple_repeat 1 26 0 1449 172 33 74 chr12 87769528 87769865 -56016590 - MER31B LTR ERV1 -143 323 1 195 42 0 0 chr12 87771919 87771943 -56014512 + (TC)n Simple_repeat Simple_repeat 2 25 0 272 224 243 28 chr12 87772094 87772201 -56014254 - MIR SINE MIR -116 146 17 183 412 41 0 chr12 87772506 87772603 -56013852 - L2 LINE L2 -26 3246 3146 23 0 0 0 chr12 87772880 87772903 -56013552 + AT_rich Low_complexity Low_complexity 1 23 0 534 165 0 3 chr12 87773313 87773547 -56012908 + AluJo SINE Alu 1 291 -21 354 346 62 25 chr12 87774484 87774724 -56011731 + MIR SINE MIR 11 259 -3 560 293 153 23 chr12 87774838 87775190 -56011265 + L2 LINE L2 2912 3309 -4 365 241 46 11 chr12 87777528 87777615 -56008840 - MER5B DNA MER1_type -1 177 88 707 190 0 19 chr12 87777728 87777886 -56008569 - SVA Other Other -782 604 450 407 223 43 21 chr12 87777888 87777982 -56008473 - MER5B DNA MER1_type -82 96 1 351 151 54 32 chr12 87778017 87778110 -56008345 + MIR SINE MIR 52 146 -62 12872 151 32 13 chr12 87778130 87780342 -56006113 - Tigger1 DNA MER2_type -5 2413 161 733 173 18 0 chr12 87780345 87780489 -56005966 - LTR47A LTR ERVL -2 450 290 234 162 297 0 chr12 87780892 87780966 -56005489 + MIR SINE MIR 156 251 -11 225 83 0 0 chr12 87781381 87781417 -56005038 + (A)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr12 87782851 87782879 -56003576 + AT_rich Low_complexity Low_complexity 1 28 0 376 308 65 27 chr12 87782894 87783079 -56003376 - L1ME LINE L1 -397 5724 5533 328 257 91 59 chr12 87783102 87783289 -56003166 - L1ME LINE L1 -759 5483 5291 377 271 98 78 chr12 87783844 87784153 -56002302 - MLT1J1 LTR MaLR -157 354 1 345 258 60 80 chr12 87785336 87785487 -56000968 - L2 LINE L2 -5 3308 3161 196 354 172 28 chr12 87786103 87786493 -55999962 - L2 LINE L2 -630 2684 2239 422 213 5 144 chr12 87786690 87786787 -55999668 - L2 LINE L2 -778 2536 2476 2489 66 0 0 chr12 87786787 87787088 -55999367 - AluY SINE Alu -2 309 9 422 213 5 144 chr12 87787088 87787178 -55999277 - L2 LINE L2 -838 2476 2375 194 304 76 65 chr12 87787837 87787969 -55998486 + L2 LINE L2 2776 2912 -402 2097 96 63 61 chr12 87787969 87788332 -55998123 - THE1B LTR MaLR 0 364 1 194 304 76 65 chr12 87788332 87788383 -55998072 + L2 LINE L2 2912 2961 -353 429 311 46 15 chr12 87788462 87788658 -55997797 + L2 LINE L2 3106 3307 -6 223 310 0 17 chr12 87788695 87788753 -55997702 - MIR SINE MIR -175 87 31 217 229 0 0 chr12 87788847 87788895 -55997560 + (CA)n Simple_repeat Simple_repeat 1 48 0 500 335 127 22 chr12 87789053 87789750 -55996705 - L2 LINE L2 0 3313 2536 2094 117 0 13 chr12 87791478 87791776 -55994679 - AluSx SINE Alu -18 294 1 206 74 74 0 chr12 87791913 87791967 -55994488 + (TTTG)n Simple_repeat Simple_repeat 4 61 0 261 390 32 8 chr12 87791978 87792101 -55994354 - MIR3 SINE MIR -78 130 5 1717 173 123 13 chr12 87794856 87795237 -55991218 - MSTB LTR MaLR 0 426 4 8440 177 27 31 chr12 87795240 87796897 -55989558 - MSTA-int LTR MaLR 0 1651 1 2163 161 73 0 chr12 87796897 87797295 -55989160 - MSTA LTR MaLR 0 428 2 457 269 100 35 chr12 87797296 87797556 -55988899 + L1MEd LINE L1 659 935 -5270 2021 98 4 0 chr12 87797812 87798077 -55988378 + AluSq SINE Alu 39 304 -9 285 304 64 40 chr12 87798107 87798482 -55987973 + L1MEd LINE L1 1370 1753 -4643 1034 216 158 32 chr12 87798808 87799188 -55987267 - MSTB LTR MaLR 0 428 1 1917 136 172 8 chr12 87799393 87799760 -55986695 + MSTA LTR MaLR 1 427 -1 31 0 0 0 chr12 87799821 87799852 -55986603 + AT_rich Low_complexity Low_complexity 1 31 0 2031 88 0 4 chr12 87799941 87800201 -55986254 + AluSc SINE Alu 36 294 -15 241 258 32 145 chr12 87800462 87800645 -55985810 + L2 LINE L2 72 227 -3087 2014 124 185 3 chr12 87800645 87801007 -55985448 - MSTA LTR MaLR 0 428 1 241 258 32 145 chr12 87801007 87801044 -55985411 + L2 LINE L2 227 267 -3047 3352 279 105 43 chr12 87801084 87802609 -55983846 + L2 LINE L2 827 2446 -868 205 278 237 40 chr12 87802609 87802782 -55983673 + L2 LINE L2 2563 2769 -545 985 217 97 0 chr12 87802832 87803116 -55983339 - MER58B DNA MER1_type -1 340 2 239 329 27 27 chr12 87803135 87803284 -55983171 + L2 LINE L2 3099 3247 -66 21 0 0 0 chr12 87803389 87803410 -55983045 + AT_rich Low_complexity Low_complexity 1 21 0 1247 160 15 0 chr12 87803469 87803669 -55982786 + AluJb SINE Alu 87 289 -23 1272 212 40 53 chr12 87805665 87806042 -55980413 + MLT1A2 LTR MaLR 1 372 -2 380 171 0 11 chr12 87806394 87806482 -55979973 + (TA)n Simple_repeat Simple_repeat 2 88 0 12545 184 57 59 chr12 87807209 87807330 -55979125 - L1PB1 LINE L1 0 6867 6747 228 86 0 0 chr12 87807330 87807365 -55979090 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1567 143 13 0 chr12 87807365 87807603 -55978852 - AluSg SINE Alu -29 281 41 12545 184 57 59 chr12 87807603 87809453 -55977002 - L1PB1 LINE L1 -119 6748 4896 315 0 0 0 chr12 87809453 87809488 -55976967 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 12545 184 57 59 chr12 87809488 87814404 -55972051 - L1PB1 LINE L1 -1971 4896 6 210 233 0 23 chr12 87815525 87815568 -55970887 + L2 LINE L2 3137 3178 -94 263 270 80 20 chr12 87815722 87815822 -55970633 + L2 LINE L2 3200 3305 -8 186 430 89 13 chr12 87815891 87816049 -55970406 - L2 LINE L2 -5 3267 3098 244 274 9 19 chr12 87816981 87817087 -55969368 + L1MC/D LINE L1 5322 5426 -2382 1004 174 89 28 chr12 87817102 87817315 -55969140 - MER46A DNA MER2_type 0 236 11 408 309 148 13 chr12 87817324 87817560 -55968895 + L1MC/D LINE L1 5439 5706 -2102 35 0 0 0 chr12 87817734 87817769 -55968686 + AT_rich Low_complexity Low_complexity 1 35 0 189 352 51 61 chr12 87818081 87818277 -55968178 - L2 LINE L2 -682 2632 2439 417 260 226 0 chr12 87820157 87820303 -55966152 - MER5A DNA MER1_type 0 189 11 21 36 0 0 chr12 87820663 87820691 -55965764 + AT_rich Low_complexity Low_complexity 1 28 0 354 242 73 48 chr12 87821367 87821491 -55964964 - MIR SINE MIR -118 144 18 302 339 95 16 chr12 87822279 87822468 -55963987 - MIR SINE MIR -11 251 48 21 0 0 0 chr12 87826282 87826303 -55960152 + AT_rich Low_complexity Low_complexity 1 21 0 389 275 65 22 chr12 87826997 87827135 -55959320 - MIR SINE MIR -90 172 29 277 336 14 50 chr12 87827282 87827422 -55959033 - MIR3 SINE MIR -6 202 68 11617 130 33 6 chr12 87828770 87830691 -55955764 - L1P LINE L1 -1052 5094 3122 2136 120 3 0 chr12 87831210 87831509 -55954946 - AluSg SINE Alu -2 308 9 1682 265 115 17 chr12 87831678 87832218 -55954237 - MLT1E LTR MaLR 0 593 1 528 260 207 0 chr12 87832219 87832369 -55954086 - MIR SINE MIR -72 190 10 2389 81 0 0 chr12 87832541 87832851 -55953604 + AluY SINE Alu 1 310 -1 182 129 65 0 chr12 87833029 87833060 -55953395 - L2 LINE L2 -328 2985 2953 2107 117 0 0 chr12 87833340 87833646 -55952809 - AluSq SINE Alu 0 306 1 225 254 18 0 chr12 87834282 87834337 -55952118 + L2 LINE L2 3004 3059 -213 486 248 20 0 chr12 87834477 87834578 -55951877 + MER5A DNA MER1_type 10 112 -77 239 314 91 25 chr12 87834762 87834883 -55951572 + MER5A DNA MER1_type 55 183 -6 3203 139 9 14 chr12 87835437 87835928 -55950527 - L1PA15 LINE L1 0 6165 5676 1664 159 85 23 chr12 87835928 87836281 -55950174 - THE1C LTR MaLR 0 375 1 3203 139 9 14 chr12 87836281 87836343 -55950112 - L1PA15 LINE L1 -489 5676 5615 2126 166 28 10 chr12 87836443 87837288 -55949167 - L1PA15 LINE L1 -537 5628 4664 2155 75 0 0 chr12 87837288 87837569 -55948886 - LTR19B LTR ERV1 -299 281 1 3440 200 39 9 chr12 87837569 87838340 -55948115 - L1PA15 LINE L1 -1486 4660 3867 2688 239 4 25 chr12 87838325 87839082 -55947373 - L1PA15 LINE L1 -3047 3099 2359 * 2077 127 141 5 chr12 87839088 87839465 -55946990 + MSTA LTR MaLR 1 428 0 7997 189 57 7 chr12 87839465 87841038 -55945417 + MSTA-int LTR MaLR 1 1651 0 1387 167 73 38 chr12 87841038 87841411 -55945044 + MSTA LTR MaLR 1 364 0 581 288 7 0 chr12 87841412 87841565 -55944890 - L1PA15 LINE L1 -3790 2356 2203 182 326 42 104 chr12 87843327 87843471 -55942984 - MIR3 SINE MIR -19 189 55 951 226 165 95 chr12 87843612 87844116 -55942339 - MLT1F1 LTR MaLR -2 565 2 1843 230 23 13 chr12 87844224 87844620 -55941835 + MER70A LTR ERVL 73 472 0 687 170 0 0 chr12 87845745 87845898 -55940557 + T-rich Low_complexity Low_complexity 1 153 0 35 41 0 0 chr12 87847803 87847852 -55938603 + AT_rich Low_complexity Low_complexity 1 49 0 1532 206 73 25 chr12 87848659 87849096 -55937359 + pTR5 LTR ERV1 741 1198 -1240 2788 143 175 77 chr12 87849216 87849965 -55936490 + LTR12 LTR ERV1 5 826 0 2275 73 37 0 chr12 87851199 87851499 -55934956 + AluY SINE Alu 1 311 0 186 71 0 0 chr12 87851576 87851604 -55934851 + (T)n Simple_repeat Simple_repeat 1 28 0 328 274 98 64 chr12 87851627 87851831 -55934624 + MER102a DNA MER1_type 119 329 -1 21 0 0 0 chr12 87852011 87852032 -55934423 + AT_rich Low_complexity Low_complexity 1 21 0 2163 132 13 0 chr12 87853173 87853477 -55932978 - AluSx SINE Alu -2 310 3 521 197 164 8 chr12 87853870 87853992 -55932463 + MER58 DNA MER1_type 1 141 -200 238 224 0 69 chr12 87854138 87854196 -55932259 + MLT1L LTR MaLR 224 277 -338 413 257 118 37 chr12 87854218 87854484 -55931971 + MLT1L LTR MaLR 243 535 -4 284 250 60 36 chr12 87855039 87855123 -55931332 - L2 LINE L2 0 3272 3187 695 255 103 5 chr12 87855132 87855316 -55931139 - MIR SINE MIR 0 262 61 696 301 60 8 chr12 87855462 87855711 -55930744 + MIR SINE MIR 1 262 0 359 22 43 0 chr12 87855866 87855912 -55930543 - MLT2C2 LTR ERVL 0 464 417 556 181 70 27 chr12 87855957 87856085 -55930370 - MLT2B1 LTR ERVL -36 456 244 3781 131 22 9 chr12 87856085 87856664 -55929791 - ERVL LTR ERVL -731 5033 4447 2158 28 0 0 chr12 87857311 87857565 -55928890 + L1PA3 LINE L1 5897 6150 -5 242 0 125 0 chr12 87857570 87857618 -55928837 + A-rich Low_complexity Low_complexity 2 55 0 2432 76 0 13 chr12 87858086 87858401 -55928054 - AluY SINE Alu 0 311 1 189 254 36 0 chr12 87858672 87858727 -55927728 + MIR3 SINE MIR 149 205 -3 1542 148 30 16 chr12 87862991 87863295 -55923160 - L1P LINE L1 -1977 4169 3862 * 4420 110 5 4 chr12 87863286 87864607 -55921848 + L1PA11 LINE L1 4647 6173 -1 243 304 205 9 chr12 87865103 87865215 -55921240 - L2 LINE L2 0 3313 3180 2079 96 11 0 chr12 87866814 87867115 -55919340 + AluSq SINE Alu 4 313 0 467 296 56 0 chr12 87867609 87867734 -55918721 - L2 LINE L2 -19 3253 3122 463 361 16 11 chr12 87868089 87868460 -55917995 + L1ME3A LINE L1 5584 5956 -214 489 331 147 27 chr12 87868488 87869128 -55917327 - L2 LINE L2 -554 2760 2044 360 330 63 71 chr12 87869149 87869658 -55916797 - L2 LINE L2 -1607 1707 1203 406 311 118 0 chr12 87870608 87870743 -55915712 + MIR3 SINE MIR 35 185 -23 870 320 135 32 chr12 87871034 87871891 -55914564 + L2 LINE L2 2242 3198 -115 31 68 0 0 chr12 87872530 87872589 -55913866 + AT_rich Low_complexity Low_complexity 1 59 0 10912 146 26 5 chr12 87872590 87874401 -55912054 - Tigger1 DNA MER2_type -569 1849 1 25 51 0 0 chr12 87874427 87874466 -55911989 + AT_rich Low_complexity Low_complexity 1 39 0 481 283 30 53 chr12 87874652 87874917 -55911538 - L1ME3A LINE L1 -223 5947 5689 545 209 95 81 chr12 87874948 87875159 -55911296 + MER112 DNA MER1_type 1 214 -46 2125 145 0 0 chr12 87875192 87875495 -55910960 + AluSx SINE Alu 1 303 -9 639 176 118 0 chr12 87876129 87876272 -55910183 - FLAM_A SINE Alu 0 157 1 801 208 53 68 chr12 87877505 87877685 -55908770 - MER63A DNA MER1_type -1478 210 32 2002 109 39 0 chr12 87877685 87877970 -55908485 + AluSx SINE Alu 1 296 -16 801 208 53 68 chr12 87877970 87877996 -55908459 - MER63A DNA MER1_type -1656 32 7 753 262 48 19 chr12 87878614 87878820 -55907635 + MER20 DNA MER1_type 7 218 -1 217 350 82 10 chr12 87880183 87880280 -55906175 - L2 LINE L2 0 3272 3169 624 245 155 0 chr12 87880317 87880472 -55905983 + MER5A DNA MER1_type 10 188 -1 252 0 0 0 chr12 87881461 87881489 -55904966 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 249 196 0 0 chr12 87881805 87881851 -55904604 - L2 LINE L2 0 3313 3268 222 343 71 0 chr12 87882350 87882420 -55904035 + L2 LINE L2 3158 3232 -40 * 414 355 88 52 chr12 87882419 87883057 -55903398 - L2 LINE L2 0 3272 2611 289 344 0 13 chr12 87883117 87883271 -55903184 + L1MEd LINE L1 3 154 -5965 1151 225 96 37 chr12 87883381 87883870 -55902585 - L1MC5 LINE L1 -36 7925 7408 408 277 67 22 chr12 87884068 87884292 -55902163 + L1MEd LINE L1 590 823 -5296 503 279 48 96 chr12 87884644 87884890 -55901565 + L1MEd LINE L1 1097 1353 -4776 2374 61 0 49 chr12 87884890 87885216 -55901239 - AluY SINE Alu -1 310 1 503 279 48 96 chr12 87885216 87885542 -55900913 + L1MEd LINE L1 1353 1628 -4501 597 308 4 17 chr12 87885627 87885864 -55900591 + L1ME3A LINE L1 5653 5886 -284 1904 97 52 21 chr12 87885872 87886160 -55900295 + AluSx SINE Alu 1 297 -15 214 315 18 63 chr12 87887096 87887207 -55899248 + MIR3 SINE MIR 93 198 -10 2033 133 3 3 chr12 87887231 87887531 -55898924 - AluSx SINE Alu -12 300 1 252 0 0 0 chr12 87887733 87887761 -55898694 + (ATATG)n Simple_repeat Simple_repeat 2 29 0 365 284 28 14 chr12 87888978 87889119 -55897336 - MER103 DNA DNA -1 165 23 566 264 27 7 chr12 87889279 87889427 -55897028 - MIR SINE MIR -1 261 111 22 0 0 0 chr12 87889667 87889689 -55896766 + AT_rich Low_complexity Low_complexity 1 22 0 2211 108 3 3 chr12 87889689 87889995 -55896460 + AluSq SINE Alu 1 306 -7 1277 68 0 6 chr12 87890420 87890582 -55895873 + AluSq SINE Alu 64 224 -89 273 163 0 0 chr12 87890616 87890659 -55895796 - L1MC/D LINE L1 -548 5785 5743 5025 200 44 26 chr12 87890661 87891844 -55894611 - L1MC1 LINE L1 -43 6290 5065 1724 194 30 30 chr12 87891844 87892209 -55894246 - MLT1A1 LTR MaLR 0 365 1 5025 200 44 26 chr12 87892209 87892866 -55893589 - L1MC1 LINE L1 -1268 5065 4421 239 242 242 0 chr12 87892991 87893057 -55893398 + L2 LINE L2 3231 3312 -1 465 283 111 52 chr12 87893144 87893550 -55892905 + MLT1L LTR MaLR 142 571 -44 27 0 0 0 chr12 87895585 87895612 -55890843 + AT_rich Low_complexity Low_complexity 1 27 0 236 308 71 99 chr12 87895639 87895821 -55890634 - MER5B DNA MER1_type 0 178 2 353 260 89 6 chr12 87896028 87896197 -55890258 - L1ME3A LINE L1 -219 5951 5769 2347 59 9 50 chr12 87896518 87896839 -55889616 - AluSp SINE Alu -5 308 1 390 286 37 19 chr12 87896938 87897099 -55889356 - LTR41 LTR ERVL -607 166 3 384 363 79 5 chr12 87897223 87897408 -55889047 + HERVL LTR ERVL 4163 4404 -1157 736 344 65 27 chr12 87897512 87898037 -55888418 + HERVL LTR ERVL 4627 5137 -517 1594 96 107 21 chr12 87898281 87898561 -55887894 + AluSx SINE Alu 1 304 -8 903 318 63 16 chr12 87898672 87899037 -55887418 + LTR16A LTR ERVL 52 433 -17 335 243 25 30 chr12 87899196 87899398 -55887057 - L1ME LINE L1 -5164 906 706 282 303 84 46 chr12 87900421 87901101 -55885354 - L1MEc LINE L1 -4667 1643 899 476 321 50 43 chr12 87901148 87901683 -55884772 - L1MEc LINE L1 -5020 1099 561 259 254 55 27 chr12 87901818 87901928 -55884527 - MLT1I LTR MaLR -6 403 291 556 264 49 12 chr12 87901975 87902138 -55884317 - MLT1J2 LTR MaLR -281 169 1 216 0 0 0 chr12 87902222 87902246 -55884209 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2136 113 3 3 chr12 87902298 87902609 -55883846 + AluSp SINE Alu 1 311 -2 279 0 0 0 chr12 87904268 87904299 -55882156 + (CA)n Simple_repeat Simple_repeat 2 32 0 2202 113 0 3 chr12 87904313 87904615 -55881840 - AluSx SINE Alu -11 301 1 1878 113 16 53 chr12 87904833 87905151 -55881304 + AluSg SINE Alu 1 306 -4 3011 156 10 14 chr12 87905219 87905706 -55880749 - MER41E LTR ERV1 0 512 28 4669 135 8 6 chr12 87906005 87906731 -55879724 - MER4D LTR ERV1 0 903 176 207 366 18 18 chr12 87906749 87906861 -55879594 + MER5A DNA MER1_type 77 188 -1 210 184 0 20 chr12 87909256 87909305 -55877150 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 2024 189 85 22 chr12 87909512 87909973 -55876482 + LTR2B LTR ERV1 1 490 0 360 324 48 53 chr12 87910604 87910811 -55875644 + L2 LINE L2 3108 3313 0 188 380 65 19 chr12 87911469 87911577 -55874878 + L2 LINE L2 3154 3266 -6 441 282 104 12 chr12 87911766 87911929 -55874526 - MIR3 SINE MIR -15 193 16 949 260 186 25 chr12 87912001 87912309 -55874146 - Charlie7 DNA MER1_type 0 2612 2355 2072 118 10 22 chr12 87912309 87912623 -55873832 + AluSq SINE Alu 1 310 -3 949 260 186 25 chr12 87912623 87913041 -55873414 - Charlie7 DNA MER1_type -257 2355 1769 1228 320 52 16 chr12 87913066 87913679 -55872776 - Charlie7 DNA MER1_type -1971 641 7 26 30 0 0 chr12 87914219 87914252 -55872203 + AT_rich Low_complexity Low_complexity 1 33 0 2434 113 36 5 chr12 87914286 87914677 -55871778 - L1MA4A LINE L1 0 6303 5901 3987 112 43 2 chr12 87914677 87915322 -55871133 + L1MA4A LINE L1 5231 5898 -405 2665 189 39 40 chr12 87915491 87915889 -55870566 + L1MB7 LINE L1 4950 5347 -837 1869 142 7 3 chr12 87915889 87916178 -55870277 - AluSx SINE Alu -22 290 1 2665 189 39 40 chr12 87916178 87916683 -55869772 + L1MB7 LINE L1 5347 5864 -320 2022 135 0 0 chr12 87916864 87917160 -55869295 + AluY SINE Alu 1 296 -15 28 71 0 0 chr12 87917170 87917226 -55869229 + AT_rich Low_complexity Low_complexity 1 56 0 7295 41 0 3 chr12 87917239 87918595 -55867860 - L1PA6 LINE L1 -3 6151 4802 1402 189 14 42 chr12 87918671 87918957 -55867498 - AluJo SINE Alu -22 290 13 249 300 12 0 chr12 87919037 87919117 -55867338 - MIR SINE MIR -3 259 179 292 342 5 57 chr12 87919237 87919430 -55867025 + MIR3 SINE MIR 20 202 -6 284 241 9 45 chr12 87919450 87919562 -55866893 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 1222 179 24 0 chr12 87921928 87922135 -55864320 - MER20 DNA MER1_type 0 219 8 21 57 0 0 chr12 87924423 87924458 -55861997 + AT_rich Low_complexity Low_complexity 1 35 0 1752 169 20 3 chr12 87924487 87924788 -55861667 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr12 87924824 87924847 -55861608 + AT_rich Low_complexity Low_complexity 1 23 0 272 304 56 37 chr12 87925060 87925221 -55861234 + MIR SINE MIR 83 246 -16 246 224 0 0 chr12 87925694 87925743 -55860712 + L2 LINE L2 3265 3313 0 9676 184 53 47 chr12 87926041 87928350 -55858105 - Tigger5 DNA MER2_type 0 2323 1 315 306 24 16 chr12 87929855 87929979 -55856476 + MIR3 SINE MIR 83 207 -1 883 214 36 59 chr12 87930140 87930203 -55856252 + MER58A DNA MER1_type 1 64 -2356 2087 106 0 20 chr12 87930203 87930504 -55855951 - AluSc SINE Alu -14 295 1 883 214 36 59 chr12 87930504 87930660 -55855795 + MER58A DNA MER1_type 64 215 -9 270 0 0 0 chr12 87930746 87930776 -55855679 + (TG)n Simple_repeat Simple_repeat 2 31 0 2088 199 18 10 chr12 87930884 87931272 -55855183 - MLT2B2 LTR ERVL 0 515 125 1321 201 15 15 chr12 87931375 87931634 -55854821 - MLT1A1 LTR MaLR -70 295 37 184 0 62 31 chr12 87931638 87931670 -55854785 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 612 174 0 83 chr12 87931698 87931745 -55854710 - MLT2B2 LTR ERVL -383 132 83 2513 68 0 0 chr12 87931745 87932056 -55854399 + AluY SINE Alu 1 311 0 612 174 0 83 chr12 87932056 87932152 -55854303 - MLT2B2 LTR ERVL -432 83 1 1910 133 7 0 chr12 87932388 87932673 -55853782 - AluSx SINE Alu -25 287 1 2358 63 0 32 chr12 87935005 87935320 -55851135 + AluY SINE Alu 1 305 -6 18376 115 10 44 chr12 87935540 87941967 -55844488 - L1PA7 LINE L1 0 6154 12 189 0 0 0 chr12 87942014 87942035 -55844420 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6719 78 0 0 chr12 87942037 87943378 -55843077 - L1PA4 LINE L1 -3 6152 4814 1997 144 3 0 chr12 87943378 87943670 -55842785 - AluSc SINE Alu -16 293 1 183 46 0 13 chr12 87943982 87944102 -55842353 + AT_rich Low_complexity Low_complexity 1 121 -179 2048 13 0 0 chr12 87944102 87944328 -55842127 - AluY SINE Alu 0 311 86 183 46 0 13 chr12 87944328 87944544 -55841911 + AT_rich Low_complexity Low_complexity 121 300 0 111 91 0 0 chr12 87944521 87944864 -55841591 + AT_rich Low_complexity Low_complexity 1 297 0 * 926 112 40 0 chr12 87944864 87945016 -55841439 + L1P4 LINE L1 5529 5686 -482 5003 113 11 4 chr12 87945406 87946158 -55840297 - L1PA10 LINE L1 -1 6167 5411 1994 114 0 0 chr12 87996190 87996496 -55789959 - AluSx SINE Alu 0 316 11 198 103 0 0 chr12 87996516 87996545 -55789910 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 423 340 127 30 chr12 87996790 87997348 -55789107 + L2 LINE L2 2021 2632 -682 260 244 176 41 chr12 87997968 87998189 -55788266 - L1M4 LINE L1 -2701 3445 3195 1004 293 47 23 chr12 87998343 87998899 -55787556 - L1M4 LINE L1 -3193 2953 2385 252 304 0 14 chr12 87999019 87999088 -55787367 - Zaphod DNA AcHobo -3960 71 4 198 0 0 0 chr12 87999244 87999266 -55787189 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 691 302 25 47 chr12 87999354 87999632 -55786823 + MLT1K LTR MaLR 20 291 -297 2278 204 98 62 chr12 87999722 88000517 -55785938 + LTR1B LTR ERV1 3 826 0 842 253 5 5 chr12 88000521 88000723 -55785732 - MLT1B LTR MaLR -1 389 188 197 206 0 0 chr12 88002435 88002469 -55783986 + MIR SINE MIR 4 37 -225 * 1048 291 141 6 chr12 88002466 88002940 -55783515 + L2 LINE L2 1705 2242 -1072 546 275 161 10 chr12 88003059 88003252 -55783203 + L2 LINE L2 275 496 -2818 557 186 0 48 chr12 88003259 88003383 -55783072 - MLT1F1 LTR MaLR -7 560 443 239 333 36 12 chr12 88003593 88003677 -55782778 + L2 LINE L2 2968 3053 -260 336 250 48 0 chr12 88005321 88005425 -55781030 - Charlie4 DNA MER1_type -8 1953 1845 3429 233 74 13 chr12 88005439 88006503 -55779952 + L1ME1 LINE L1 5041 6161 -5 2847 143 63 16 chr12 88007524 88008082 -55778373 + L1MA7 LINE L1 5708 6291 0 189 0 0 0 chr12 88008479 88008500 -55777955 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 223 346 44 37 chr12 88008617 88008753 -55777702 - L2 LINE L2 -177 3095 2959 513 360 72 41 chr12 88009481 88010092 -55776363 + L2 LINE L2 2237 2866 -448 806 255 11 5 chr12 88010181 88010369 -55776086 - MIR SINE MIR -62 200 12 1540 191 71 44 chr12 88010523 88011065 -55775390 - MLT2A2 LTR ERVL 0 554 16 606 342 105 14 chr12 88011065 88011495 -55774960 + L2 LINE L2 1910 2378 -936 862 316 52 27 chr12 88011561 88011969 -55774486 - MER90 LTR ERV1 -9 605 188 1295 212 99 33 chr12 88012153 88012439 -55774016 - L1M1 LINE L1 -4729 2836 2512 2528 147 16 16 chr12 88012439 88012867 -55773588 + MSTB1 LTR MaLR 1 428 -4 1295 212 99 33 chr12 88012867 88013004 -55773451 - L1M1 LINE L1 -5053 2512 2385 580 234 70 31 chr12 88012996 88014155 -55772300 - L1ME LINE L1 0 6636 1215 * 2447 258 70 33 chr12 88014204 88014574 -55771881 - L1ME LINE L1 -5766 774 419 333 0 0 0 chr12 88014574 88014611 -55771844 + (TG)n Simple_repeat Simple_repeat 2 38 0 2447 258 70 33 chr12 88014611 88014974 -55771481 - L1ME LINE L1 -6121 419 14 180 0 0 0 chr12 88015109 88015129 -55771326 + (TA)n Simple_repeat Simple_repeat 1 20 0 882 247 35 66 chr12 88016771 88017030 -55769425 + MIR SINE MIR 12 262 0 38 0 0 0 chr12 88017977 88018015 -55768440 + AT_rich Low_complexity Low_complexity 1 38 0 290 289 78 45 chr12 88018020 88018262 -55768193 + L1ME4a LINE L1 5634 5883 -238 192 240 13 80 chr12 88018497 88018572 -55767883 - MER5C DNA MER1_type -237 87 18 4813 163 33 21 chr12 88018861 88020442 -55766013 - L1MA8 LINE L1 -3 6288 4692 1629 39 5 0 chr12 88020450 88020654 -55765801 - L1PA4 LINE L1 -3 6152 5948 10684 168 33 75 chr12 88020654 88025172 -55761283 - L1PA4 LINE L1 -42 6349 2025 1994 240 40 14 chr12 88025154 88025724 -55760731 - L1M1 LINE L1 -4528 3037 2453 * 244 200 0 0 chr12 88025731 88025776 -55760679 + L1M4 LINE L1 4192 4236 -1910 23 0 0 0 chr12 88026299 88026322 -55760133 + AT_rich Low_complexity Low_complexity 1 23 0 2371 74 0 16 chr12 88026533 88026843 -55759612 + AluSq SINE Alu 1 305 -8 2361 112 19 19 chr12 88029713 88030088 -55756367 + THE1C LTR MaLR 1 375 0 3673 202 28 32 chr12 88031299 88032322 -55754133 + L1MA5A LINE L1 1988 3000 -3848 278 200 20 0 chr12 88032323 88032373 -55754082 + Alu SINE Alu 1 51 -251 216 0 0 0 chr12 88032411 88032435 -55754020 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 14041 173 21 11 chr12 88032435 88035393 -55751062 + L1MA5A LINE L1 2994 6006 -993 180 77 0 0 chr12 88035393 88035419 -55751036 + (CAA)n Simple_repeat Simple_repeat 2 27 0 14041 173 21 11 chr12 88035419 88036421 -55750034 + L1MA5A LINE L1 6006 6996 -3 1228 148 40 0 chr12 88036430 88036632 -55749823 - MER2 DNA MER2_type -135 210 1 1304 153 10 12 chr12 88036833 88037081 -55749374 + L1MA5A LINE L1 6545 6791 -208 778 316 35 0 chr12 88037847 88038075 -55748380 + MIR SINE MIR 23 258 -4 1902 181 74 48 chr12 88038101 88038209 -55748246 - L1MC3 LINE L1 -24 7761 7657 2310 73 0 0 chr12 88038209 88038498 -55747957 - AluY SINE Alu -22 289 1 1902 181 74 48 chr12 88038498 88038864 -55747591 - L1MC3 LINE L1 -128 7657 7275 6724 106 1 4 chr12 88038966 88039963 -55746492 - L1P LINE L1 -3528 2618 1625 1197 117 0 0 chr12 88039954 88040117 -55746338 + L1P LINE L1 1500 1662 -4484 * 29 0 0 0 chr12 88040243 88040272 -55746183 + AT_rich Low_complexity Low_complexity 1 29 0 390 299 152 18 chr12 88040919 88041143 -55745312 + MIR SINE MIR 9 262 0 23808 60 1 2 chr12 88041658 88045426 -55741029 + L1PA5 LINE L1 2381 6151 -3 406 266 79 31 chr12 88045443 88045672 -55740783 + L1M4c LINE L1 2259 2498 -3886 1640 164 13 45 chr12 88045677 88045988 -55740467 + AluJo SINE Alu 5 305 -7 566 63 13 0 chr12 88046013 88046092 -55740363 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 8225 201 22 43 chr12 88046092 88047617 -55738838 + L1M4c LINE L1 2490 3959 -2423 690 190 16 8 chr12 88047617 88047738 -55738717 + FLAM_A SINE Alu 2 123 -10 8225 201 22 43 chr12 88047738 88048318 -55738137 + L1M4c LINE L1 3959 4550 -1832 25633 86 9 10 chr12 88049259 88052885 -55733570 + L1P LINE L1 955 4576 -1570 1053 178 38 23 chr12 88052988 88053288 -55733167 - L1P4 LINE L1 -678 5488 5189 4133 198 40 28 chr12 88053294 88053715 -55732740 - L1 LINE L1 -1060 5086 4672 2132 118 3 0 chr12 88053715 88054002 -55732453 - AluSc SINE Alu -21 288 1 4133 198 40 28 chr12 88054002 88054593 -55731862 - L1 LINE L1 -1474 4672 4061 734 227 13 13 chr12 88054595 88054749 -55731706 - MLT1A1 LTR MaLR -209 156 3 241 340 10 21 chr12 88055800 88055897 -55730558 - L2 LINE L2 0 3272 3177 502 222 204 43 chr12 88055902 88056064 -55730391 + MER5A DNA MER1_type 1 188 -1 229 397 15 0 chr12 88056232 88056363 -55730092 + L2 LINE L2 2722 2854 -460 1751 199 42 30 chr12 88056538 88056899 -55729556 - MLT1A1 LTR MaLR 0 365 1 376 278 0 0 chr12 88057459 88057556 -55728899 - L1MC4 LINE L1 -1331 6711 6615 1941 129 25 0 chr12 88057556 88057836 -55728619 - AluSp SINE Alu -26 287 1 195 244 67 0 chr12 88057865 88057910 -55728545 - L2 LINE L2 -3 3310 3263 367 270 186 23 chr12 88057930 88058119 -55728336 - MIR SINE MIR -5 257 40 442 272 130 74 chr12 88058528 88059165 -55727290 - L1M2 LINE L1 -5645 1204 382 22 35 0 0 chr12 88060112 88060141 -55726314 + AT_rich Low_complexity Low_complexity 1 29 0 186 358 147 0 chr12 88060835 88060930 -55725525 - L2 LINE L2 -3 3310 3202 1915 175 52 6 chr12 88061092 88061440 -55725015 - MLT1A1 LTR MaLR 0 365 2 2036 142 58 21 chr12 88062502 88062827 -55723628 + MER1B DNA MER1_type 1 337 0 1957 111 73 32 chr12 88063081 88063423 -55723032 - THE1C LTR MaLR 0 375 20 283 286 17 45 chr12 88063677 88063855 -55722600 + (CGGGG)n Simple_repeat Simple_repeat 4 176 0 * 510 351 0 0 chr12 88063730 88063920 -55722535 + G-rich Low_complexity Low_complexity 1 190 0 213 94 0 0 chr12 88067880 88067912 -55718543 + (CCCCAG)n Simple_repeat Simple_repeat 3 34 0 210 349 70 0 chr12 88068700 88068786 -55717669 - L2 LINE L2 -257 3015 2924 519 368 82 16 chr12 88068857 88069281 -55717174 - L2 LINE L2 -528 2786 2335 354 80 0 0 chr12 88071086 88071136 -55715319 + (TA)n Simple_repeat Simple_repeat 2 51 0 319 293 28 47 chr12 88071743 88071849 -55714606 + LTR67 LTR ERVL 103 206 -351 431 261 36 9 chr12 88072366 88072477 -55713978 - MER81 DNA DNA 0 114 1 331 335 57 11 chr12 88073569 88073745 -55712710 - MIR SINE MIR -31 231 48 228 135 0 0 chr12 88075378 88075415 -55711040 + (TA)n Simple_repeat Simple_repeat 1 37 0 2055 130 30 3 chr12 88075495 88075796 -55710659 + AluSc SINE Alu 1 309 0 183 281 35 0 chr12 88075807 88075864 -55710591 - MER5A DNA MER1_type -118 71 13 223 258 113 57 chr12 88076735 88076859 -55709596 + MIR SINE MIR 68 198 -64 3027 158 13 23 chr12 88076966 88077490 -55708965 - MER44D DNA MER2_type 0 605 32 17956 60 4 15 chr12 88077894 88080859 -55705596 + L1PA6 LINE L1 3065 5992 -162 260 177 0 16 chr12 88081443 88081505 -55704950 + L1PA6 LINE L1 6094 6154 0 5219 156 57 7 chr12 88081519 88082430 -55704025 - L1M3f LINE L1 -4362 966 10 583 278 64 81 chr12 88082475 88082820 -55703635 + LTR33A LTR ERVL 9 347 -176 25 31 0 0 chr12 88082980 88083012 -55703443 + AT_rich Low_complexity Low_complexity 1 32 0 311 260 58 29 chr12 88083573 88083677 -55702778 + L2 LINE L2 3207 3313 0 27 62 0 0 chr12 88084645 88084693 -55701762 + GC_rich Low_complexity Low_complexity 1 48 0 285 271 31 31 chr12 88086312 88086371 -55700084 - HAL1b LINE L1 -24 1324 1266 2408 69 0 7 chr12 88086371 88086675 -55699780 + AluY SINE Alu 1 302 -9 285 271 31 31 chr12 88086675 88086744 -55699711 - HAL1b LINE L1 -81 1267 1196 480 295 78 10 chr12 88086796 88086989 -55699466 - LTR16A LTR ERVL -5 445 240 362 361 95 0 chr12 88087444 88087602 -55698853 - MIR3 SINE MIR -4 204 32 440 151 0 70 chr12 88087605 88087691 -55698764 - MADE1 DNA Mariner 0 80 1 1874 144 0 33 chr12 88088058 88088357 -55698098 - L1PB3 LINE L1 -1 6153 5865 12547 149 23 52 chr12 88088357 88089429 -55697026 - L1M1 LINE L1 -4521 3044 1942 2486 146 3 8 chr12 88089429 88089806 -55696649 + THE1C LTR MaLR 1 375 0 12547 149 23 52 chr12 88089806 88091139 -55695316 - L1M1 LINE L1 -5623 1942 731 2345 126 16 19 chr12 88091139 88091504 -55694951 - THE1B LTR MaLR 0 364 1 12547 149 23 52 chr12 88091504 88091849 -55694606 - L1M1 LINE L1 -6834 731 377 1644 173 7 39 chr12 88092485 88092617 -55693838 + AluJo SINE Alu 1 136 -176 1556 165 8 0 chr12 88092617 88092885 -55693570 + AluJb SINE Alu 46 315 0 1644 173 7 39 chr12 88092885 88093058 -55693397 + AluJo SINE Alu 136 297 -15 2355 61 40 3 chr12 88093331 88093627 -55692828 - AluY SINE Alu -4 307 1 21 0 0 0 chr12 88094065 88094086 -55692369 + AT_rich Low_complexity Low_complexity 1 21 0 3387 111 14 2 chr12 88094694 88095182 -55691273 + L1PB1 LINE L1 5658 6151 0 220 310 0 57 chr12 88095605 88095763 -55690692 + C-rich Low_complexity Low_complexity 3 151 0 23 0 0 0 chr12 88095940 88095963 -55690492 + GC_rich Low_complexity Low_complexity 1 23 0 1004 138 13 0 chr12 88096982 88097141 -55689314 - MER58B DNA MER1_type 0 341 181 247 254 0 28 chr12 88097658 88097729 -55688726 + MLT1K LTR MaLR 402 470 -118 1841 207 6 6 chr12 88097784 88098137 -55688318 + MLT1A1 LTR MaLR 13 365 0 2050 121 0 48 chr12 88098850 88099165 -55687290 - AluSx SINE Alu -12 300 1 1615 189 39 24 chr12 88099715 88100048 -55686407 - L1M1 LINE L1 -7206 359 22 774 269 68 61 chr12 88100623 88100664 -55685791 - MLT1K LTR MaLR -4 584 545 2186 125 0 0 chr12 88100664 88100959 -55685496 + AluSc SINE Alu 1 295 -14 774 269 68 61 chr12 88100959 88101373 -55685082 - MLT1K LTR MaLR -43 545 62 603 250 40 25 chr12 88101652 88101852 -55684603 - MLT1K LTR MaLR -3 585 383 331 305 98 18 chr12 88101908 88102072 -55684383 - MLT1K LTR MaLR -370 218 42 2535 129 46 4 chr12 88102805 88103360 -55683095 + LTR12 LTR ERV1 257 714 0 4579 133 20 20 chr12 88103404 88104422 -55682033 + MER83B-int LTR ERV1 741 1837 -5368 3307 154 4 3 chr12 88104433 88104997 -55681458 + MER83B-int LTR ERV1 1003 1481 -3399 4566 209 28 56 chr12 88105232 88107861 -55678594 - L1 LINE L1 -2835 4730 2189 1497 135 109 33 chr12 88107870 88108144 -55678311 + L1P3 LINE L1 5 299 -6162 422 278 8 28 chr12 88108227 88108555 -55677900 + C-rich Low_complexity Low_complexity 1 321 0 269 288 30 23 chr12 88108569 88108701 -55677754 + C-rich Low_complexity Low_complexity 5 137 0 340 153 0 0 chr12 88109135 88109194 -55677261 - MIR SINE MIR -108 154 96 630 329 83 25 chr12 88110252 88110881 -55675574 + L2 LINE L2 2223 2887 -427 240 356 90 68 chr12 88110924 88111247 -55675208 + L2 LINE L2 2934 3263 -9 426 316 151 0 chr12 88111414 88111620 -55674835 + MIR SINE MIR 26 262 0 2020 156 7 0 chr12 88111649 88111957 -55674498 - AluSx SINE Alu -2 310 1 24 85 0 0 chr12 88112196 88112255 -55674200 + GC_rich Low_complexity Low_complexity 1 59 0 238 195 11 35 chr12 88112282 88112374 -55674081 + (CGGG)n Simple_repeat Simple_repeat 1 89 0 1762 128 0 4 chr12 88112604 88112854 -55673601 - AluSx SINE Alu -63 249 1 892 170 121 0 chr12 88114747 88114929 -55671526 + MER3 DNA MER1_type 1 204 -5 762 297 4 8 chr12 88115105 88115341 -55671114 - MIR SINE MIR -16 246 12 327 290 0 56 chr12 88116974 88117081 -55669374 - MIR SINE MIR -70 192 92 263 243 95 0 chr12 88117250 88117324 -55669131 + MIR SINE MIR 181 261 -1 256 286 0 71 chr12 88118083 88118181 -55668274 - L3 LINE CR1 -635 942 852 2512 77 0 0 chr12 88118191 88118490 -55667965 - AluY SINE Alu -12 299 1 34 55 0 0 chr12 88118684 88118739 -55667716 + AT_rich Low_complexity Low_complexity 1 55 0 420 316 84 19 chr12 88118952 88119262 -55667193 - L3 LINE CR1 -508 1069 740 1563 186 38 28 chr12 88119307 88119597 -55666858 - AluJo SINE Alu -19 293 1 352 250 45 80 chr12 88120021 88120221 -55666234 + LTR67 LTR ERVL 350 542 -15 865 201 5 25 chr12 88121973 88122172 -55664283 + L1MB1 LINE L1 5974 6168 0 1130 167 248 24 chr12 88124121 88124541 -55661914 + Zaphod DNA AcHobo 477 990 -3041 456 183 92 24 chr12 88124539 88124703 -55661752 + Zaphod DNA AcHobo 3595 3769 -262 * 233 250 23 11 chr12 88124699 88124787 -55661668 + Zaphod DNA AcHobo 3698 3786 -245 * 451 327 102 40 chr12 88124929 88125381 -55661074 - L2 LINE L2 -527 2787 2308 350 262 122 67 chr12 88127815 88127979 -55658476 - MER5B DNA MER1_type -5 173 1 290 123 18 0 chr12 88129586 88129643 -55656812 + (TA)n Simple_repeat Simple_repeat 1 58 0 260 337 61 0 chr12 88129901 88129999 -55656456 + L2 LINE L2 3210 3313 0 265 276 51 49 chr12 88130164 88130402 -55656053 - L1MC5 LINE L1 -547 7495 7260 * 287 245 65 91 chr12 88130399 88130609 -55655846 - L1MC4a LINE L1 -632 7234 7034 299 127 0 0 chr12 88130657 88130712 -55655743 + (G)n Simple_repeat Simple_repeat 1 55 0 21 43 0 0 chr12 88130712 88130735 -55655720 + GC_rich Low_complexity Low_complexity 1 23 0 206 215 0 31 chr12 88130784 88130849 -55655606 + (CCCCG)n Simple_repeat Simple_repeat 4 66 0 11235 99 15 3 chr12 88131183 88132814 -55653641 + L1P LINE L1 1393 3043 -3103 210 278 0 0 chr12 88133192 88133246 -55653209 + G-rich Low_complexity Low_complexity 1 54 0 27 62 0 0 chr12 88133863 88133911 -55652544 + AT_rich Low_complexity Low_complexity 1 48 0 2159 101 35 0 chr12 88134175 88134461 -55651994 - AluSg SINE Alu -14 296 1 398 264 0 0 chr12 88134865 88135032 -55651423 + C-rich Low_complexity Low_complexity 1 167 0 277 181 34 23 chr12 88135103 88135284 -55651171 + CT-rich Low_complexity Low_complexity 1 183 0 227 280 0 0 chr12 88135720 88135770 -55650685 + polypurine Low_complexity Low_complexity 1 50 0 2625 108 3 3 chr12 88135928 88136290 -55650165 - THE1B LTR MaLR 0 364 3 2187 92 13 35 chr12 88136628 88136943 -55649512 + AluSp SINE Alu 1 308 -5 2957 88 0 0 chr12 88137590 88137977 -55648478 - L1P3 LINE L1 -340 5814 5428 189 0 0 0 chr12 88137997 88138018 -55648437 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 6185 70 7 30 chr12 88138029 88138895 -55647560 - L1PA4 LINE L1 -3 6152 5307 21 0 0 0 chr12 88139115 88139136 -55647319 + GC_rich Low_complexity Low_complexity 1 21 0 208 273 0 0 chr12 88139470 88139525 -55646930 + G-rich Low_complexity Low_complexity 1 55 0 693 314 42 17 chr12 88140952 88141188 -55645267 + MIR SINE MIR 20 261 -1 29 60 0 0 chr12 88142934 88142984 -55643471 + GC_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr12 88143035 88143059 -55643396 + GC_rich Low_complexity Low_complexity 1 24 0 3354 134 29 6 chr12 88143793 88144308 -55642147 - MER1A DNA MER1_type 0 527 1 24 32 0 0 chr12 88144845 88144876 -55641579 + AT_rich Low_complexity Low_complexity 1 31 0 224 213 55 7 chr12 88145020 88145087 -55641368 - MIR SINE MIR -77 131 64 459 304 62 10 chr12 88145164 88145470 -55640985 + L1ME4a LINE L1 5590 5911 -210 268 240 226 53 chr12 88147614 88147822 -55638633 - MIR SINE MIR 0 262 19 199 297 68 0 chr12 88148142 88148216 -55638239 - L2 LINE L2 0 3272 3194 296 226 22 95 chr12 88148240 88148377 -55638078 - MLT1K LTR MaLR -2 586 460 1796 148 102 0 chr12 88148435 88148718 -55637737 - AluSx SINE Alu 0 312 1 328 315 27 0 chr12 88148825 88148936 -55637519 - MLT1K LTR MaLR -338 250 137 274 216 81 14 chr12 88150016 88150090 -55636365 - L2 LINE L2 0 3313 3235 306 303 71 82 chr12 88150635 88150929 -55635526 + L1M2 LINE L1 824 1114 -5735 1884 268 68 61 chr12 88151275 88152447 -55634008 - L1M3e LINE L1 -5043 1987 807 640 222 102 0 chr12 88152475 88152651 -55633804 - L1M3e LINE L1 -6688 342 149 234 327 96 39 chr12 88153507 88153663 -55632792 + MIR SINE MIR 50 214 -48 181 289 60 107 chr12 88155387 88155536 -55630919 - MIR SINE MIR -11 251 110 195 146 0 0 chr12 88156937 88156978 -55629477 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 531 141 0 0 chr12 88156991 88157083 -55629372 + (GAA)n Simple_repeat Simple_repeat 1 92 0 6823 102 31 0 chr12 88157746 88158778 -55627677 + L1P3 LINE L1 573 1636 -4825 5550 25 0 3 chr12 88159499 88160193 -55626262 + L1P LINE L1 4451 5142 -1004 576 318 33 25 chr12 88160687 88160863 -55625592 - MIR SINE MIR -10 252 72 1668 158 65 3 chr12 88160863 88161186 -55625269 + MER2 DNA MER2_type 1 343 -1 576 318 33 25 chr12 88161186 88161251 -55625204 - MIR SINE MIR -190 72 9 1168 180 54 22 chr12 88161566 88161844 -55624611 - MER47A DNA MER2_type -37 329 43 352 259 11 43 chr12 88162565 88162821 -55623634 + (CCCCG)n Simple_repeat Simple_repeat 1 247 0 28 92 0 0 chr12 88162941 88163006 -55623449 + GC_rich Low_complexity Low_complexity 1 65 0 26 50 0 0 chr12 88163643 88163683 -55622772 + AT_rich Low_complexity Low_complexity 1 40 0 516 331 12 0 chr12 88164133 88164305 -55622150 + C-rich Low_complexity Low_complexity 4 177 0 237 283 27 54 chr12 88164236 88164420 -55622035 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 * 7309 117 7 26 chr12 88164670 88165959 -55620496 - L1P LINE L1 -2287 3859 2596 50 59 0 0 chr12 88166177 88166262 -55620193 + AT_rich Low_complexity Low_complexity 1 85 0 196 290 183 15 chr12 88166991 88167122 -55619333 + MIR SINE MIR 100 252 -10 8101 223 81 28 chr12 88167780 88168563 -55617892 - L1 LINE L1 -1451 4931 4191 240 35 0 0 chr12 88168563 88168592 -55617863 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 8101 223 81 28 chr12 88168592 88171195 -55615260 - L1 LINE L1 -2191 4191 1338 2426 51 0 0 chr12 88171195 88171491 -55614964 + L1PA5 LINE L1 5859 6154 0 22 0 0 0 chr12 88172280 88172302 -55614153 + AT_rich Low_complexity Low_complexity 1 22 0 4560 72 7 67 chr12 88173175 88173874 -55612581 + L1PB1 LINE L1 5495 6151 0 21 57 0 0 chr12 88174683 88174718 -55611737 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 88174750 88174771 -55611684 + AT_rich Low_complexity Low_complexity 1 21 0 2346 91 3 0 chr12 88175607 88175916 -55610539 - AluSp SINE Alu -3 310 1 1987 140 76 12 chr12 88176197 88176539 -55609916 + THE1B LTR MaLR 1 364 0 652 161 0 87 chr12 88176676 88176837 -55609618 + HSMAR2 DNA Mariner 2 148 -1154 321 285 94 79 chr12 88177683 88177950 -55608505 - L1MC4a LINE L1 -1857 5951 5681 240 319 32 51 chr12 88178234 88178391 -55608064 + MER5A DNA MER1_type 7 160 -29 1674 140 24 0 chr12 88178393 88178698 -55607757 + MER58B DNA MER1_type 26 341 0 193 213 106 0 chr12 88178698 88178745 -55607710 + L3 LINE CR1 1526 1577 0 811 226 6 0 chr12 88178985 88179149 -55607306 - MIR SINE MIR -30 232 68 266 291 112 40 chr12 88179322 88179545 -55606910 - Charlie8 DNA MER1_type -2008 409 171 2065 136 0 3 chr12 88180025 88180336 -55606119 - AluSq SINE Alu 0 310 1 997 205 43 12 chr12 88181095 88181353 -55605102 + L1MD3 LINE L1 7729 7994 -1 311 136 17 0 chr12 88181652 88181711 -55604744 + (TA)n Simple_repeat Simple_repeat 2 61 0 321 337 84 6 chr12 88184186 88184364 -55602091 + L2 LINE L2 3118 3309 -4 473 210 47 32 chr12 88184385 88184590 -55601865 + MER58 DNA MER1_type 1 2417 -3 602 219 112 6 chr12 88184621 88184790 -55601665 + MER3 DNA MER1_type 23 209 0 1935 103 4 0 chr12 88185518 88185779 -55600676 + AluSp SINE Alu 45 306 -7 2042 159 3 0 chr12 88185784 88186137 -55600318 + L1MA7 LINE L1 5436 5789 -502 236 114 45 0 chr12 88186137 88186181 -55600274 + Tigger2 DNA MER2_type 1 46 -2672 319 44 0 0 chr12 88186202 88186247 -55600208 - L1PA3 LINE L1 0 6155 6111 2102 149 16 5 chr12 88186279 88186647 -55599808 + Tigger2 DNA MER2_type 2344 2715 -3 2033 181 34 34 chr12 88186650 88187120 -55599335 + L1MA7 LINE L1 5786 6255 -36 268 287 16 106 chr12 88187144 88187332 -55599123 + MIR SINE MIR 74 244 -18 2024 107 0 27 chr12 88187645 88187903 -55598552 + AluSq SINE Alu 23 273 -40 324 0 0 0 chr12 88187903 88187939 -55598516 + (TC)n Simple_repeat Simple_repeat 1 36 0 2024 107 0 27 chr12 88187939 88187978 -55598477 + AluSq SINE Alu 273 312 -1 22 0 0 0 chr12 88187978 88188000 -55598455 + AT_rich Low_complexity Low_complexity 1 22 0 244 313 10 10 chr12 88188001 88188097 -55598358 - MER110 LTR ERV1 -218 273 178 1281 233 80 19 chr12 88188484 88188857 -55597598 - MSTD LTR MaLR 0 396 1 693 277 77 26 chr12 88189013 88189323 -55597132 + MER110 LTR ERV1 166 491 0 198 325 67 25 chr12 88189330 88189450 -55597005 + MIR SINE MIR 138 262 0 957 252 63 109 chr12 88189864 88190434 -55596021 - MER77 LTR ERV1 -6 599 98 231 273 56 70 chr12 88190407 88190550 -55595905 - MER77 LTR ERV1 -408 197 57 * 322 281 209 14 chr12 88190589 88190799 -55595656 - MIR SINE MIR -1 261 11 801 146 35 0 chr12 88191080 88191224 -55595231 - MER84 LTR ERVI 0 507 359 575 94 0 62 chr12 88191226 88191322 -55595133 + MER84-int LTR ERV1 2200 2289 -2665 503 90 13 0 chr12 88191397 88191475 -55594980 + (GA)n Simple_repeat Simple_repeat 2 80 0 546 320 32 20 chr12 88191516 88191766 -55594689 + LTR36 LTR ERV1 359 611 0 1153 270 56 58 chr12 88192165 88192699 -55593756 + MLT1H LTR MaLR 1 533 -16 6059 42 3 0 chr12 88193517 88194251 -55592204 - L1PA5 LINE L1 -3 6151 5416 3384 52 0 0 chr12 88194251 88194678 -55591777 + L1P LINE L1 4600 5026 -1120 2134 124 3 0 chr12 88195335 88195633 -55590822 + AluSx SINE Alu 2 300 -12 21 0 0 0 chr12 88196283 88196304 -55590151 + AT_rich Low_complexity Low_complexity 1 21 0 835 198 78 16 chr12 88196410 88196602 -55589853 + MER20 DNA MER1_type 16 219 0 271 280 97 77 chr12 88197251 88197458 -55588997 - MLT1H LTR MaLR 0 549 339 322 277 52 45 chr12 88197548 88197703 -55588752 - MLT1H LTR MaLR -381 168 13 710 259 136 31 chr12 88197928 88198269 -55588186 + MLT1J2 LTR MaLR 67 442 -8 221 325 63 56 chr12 88198409 88198535 -55587920 - L3 LINE CR1 -79 1498 1372 697 184 35 0 chr12 88199610 88199751 -55586704 + L1MB1 LINE L1 6029 6174 -15 29 28 0 0 chr12 88201063 88201099 -55585356 + AT_rich Low_complexity Low_complexity 1 36 0 1063 257 69 29 chr12 88201608 88202016 -55584439 + MLT1C LTR MaLR 44 467 0 317 351 18 0 chr12 88202499 88202610 -55583845 + MER5A DNA MER1_type 49 161 -28 1784 183 0 16 chr12 88203195 88203507 -55582948 - AluJb SINE Alu -5 307 1 2166 104 0 23 chr12 88203854 88204161 -55582294 - AluSx SINE Alu -12 300 1 247 250 0 0 chr12 88204838 88204894 -55581561 + GA-rich Low_complexity Low_complexity 1 56 0 1564 202 19 95 chr12 88205002 88205467 -55580988 - MER63B DNA MER1_type -6 430 1 307 221 94 55 chr12 88207110 88207237 -55579218 - L1MCa LINE L1 -4354 2072 1941 295 337 61 0 chr12 88207429 88207527 -55578928 + L2 LINE L2 3210 3313 0 252 283 52 37 chr12 88207692 88207930 -55578525 - L1MC5 LINE L1 -568 7474 7260 * 482 214 84 77 chr12 88207927 88208174 -55578281 - L1MC4 LINE L1 -727 7234 7011 234 327 96 39 chr12 88208691 88208847 -55577608 - MIR SINE MIR -48 214 50 21 36 0 0 chr12 88209498 88209526 -55576929 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 88210583 88210611 -55575844 + AT_rich Low_complexity Low_complexity 1 28 0 507 343 7 0 chr12 88211004 88211150 -55575305 + MIR3 SINE MIR 23 169 -39 1743 146 66 30 chr12 88211841 88212023 -55574432 + THE1C LTR MaLR 1 175 -200 444 19 0 0 chr12 88212023 88212076 -55574379 + (TC)n Simple_repeat Simple_repeat 1 53 0 1743 146 66 30 chr12 88212076 88212255 -55574200 + THE1C LTR MaLR 175 375 0 508 353 79 48 chr12 88212516 88213049 -55573406 + L2 LINE L2 2630 3196 -117 30 0 0 0 chr12 88213236 88213266 -55573189 + AT_rich Low_complexity Low_complexity 1 30 0 2083 112 35 0 chr12 88213267 88213553 -55572902 - AluSq SINE Alu -17 296 1 242 209 75 30 chr12 88214638 88214705 -55571750 - L1MC4 LINE L1 -1012 7030 6961 234 0 0 0 chr12 88214896 88214922 -55571533 + (TG)n Simple_repeat Simple_repeat 2 27 0 532 230 20 0 chr12 88215758 88215858 -55570597 - FRAM SINE Alu -75 101 1 1704 159 34 22 chr12 88216634 88216954 -55569501 - MER47A DNA MER2_type 0 366 43 270 224 0 65 chr12 88217561 88217605 -55568850 + L1P LINE L1 3020 3065 -3081 2235 96 0 53 chr12 88217605 88217928 -55568527 + AluSx SINE Alu 1 306 -6 270 224 0 65 chr12 88217928 88217990 -55568465 + L1P LINE L1 3065 3119 -3027 6156 85 26 25 chr12 88217991 88219174 -55567281 + L1PA11 LINE L1 4991 6174 0 513 47 0 0 chr12 88219495 88219559 -55566896 + (TG)n Simple_repeat Simple_repeat 2 65 0 528 226 95 63 chr12 88219930 88220151 -55566304 + MLT1K LTR MaLR 353 580 -8 270 263 237 19 chr12 88220309 88220465 -55565990 + Charlie8 DNA MER1_type 74 263 -2154 217 245 43 106 chr12 88221603 88221666 -55564789 - MIR SINE MIR -7 255 198 249 119 0 0 chr12 88221666 88221708 -55564747 + (TA)n Simple_repeat Simple_repeat 2 43 0 217 245 43 106 chr12 88221708 88221738 -55564717 - MIR SINE MIR -64 198 168 310 220 204 68 chr12 88221984 88222116 -55564339 - MER91A DNA MER1_type -25 171 22 3487 257 187 31 chr12 88222754 88225593 -55560862 + L1M3e LINE L1 1 2966 -4140 5130 160 18 1 chr12 88225607 88226461 -55559994 + L1P LINE L1 11 878 -5268 263 281 129 14 chr12 88226910 88227049 -55559406 - LTR33 LTR ERVL -7 514 360 3451 177 26 24 chr12 88227049 88227731 -55558724 + MER50 LTR ERV1 1 684 -50 186 133 0 0 chr12 88228660 88228690 -55557765 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1622 216 32 63 chr12 88229515 88230037 -55556418 + MLT1D LTR MaLR 3 626 0 329 65 0 0 chr12 88230473 88230519 -55555936 + L1PA3 LINE L1 6107 6152 -3 757 226 117 71 chr12 88232395 88232704 -55553751 + MER5C DNA MER1_type 1 323 -1 241 353 0 0 chr12 88232744 88232829 -55553626 + MIR SINE MIR 164 248 -14 592 283 148 48 chr12 88234176 88234533 -55551922 + L2 LINE L2 2911 3303 -10 180 272 99 49 chr12 88236057 88236138 -55550317 - L3 LINE CR1 -475 1102 1018 5184 104 24 2 chr12 88236374 88237422 -55549033 - L1PA10 LINE L1 -146 6022 4955 528 186 129 16 chr12 88237423 88237547 -55548908 - FLAM_C SINE Alu -5 138 1 3159 181 97 0 chr12 88237549 88238230 -55548225 - L1 LINE L1 -1772 4374 3628 34 0 0 0 chr12 88238233 88238267 -55548188 + AT_rich Low_complexity Low_complexity 1 34 0 783 162 0 0 chr12 88238276 88238393 -55548062 - FRAM SINE Alu -24 152 36 302 273 126 11 chr12 88238529 88238712 -55547743 + L1M3e LINE L1 3120 3323 -3783 5863 108 25 9 chr12 88238766 88240873 -55545582 - L1PA16 LINE L1 -9 6157 4020 804 285 100 10 chr12 88241286 88241577 -55544878 + MER110 LTR ERV1 163 479 -12 389 276 42 28 chr12 88241588 88241766 -55544689 - MIR SINE MIR -64 144 7 453 290 73 16 chr12 88241854 88241978 -55544477 + L2 LINE L2 3137 3267 -5 2337 86 10 0 chr12 88242397 88242699 -55543756 - AluSq SINE Alu -8 305 1 355 225 40 145 chr12 88243129 88243507 -55542948 + L1MC5 LINE L1 7243 7541 -420 412 202 11 146 chr12 88243653 88243831 -55542624 + L1MC5 LINE L1 7758 7911 -50 22 56 0 0 chr12 88243956 88243992 -55542463 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 88244751 88244772 -55541683 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 88245349 88245379 -55541076 + AT_rich Low_complexity Low_complexity 1 30 0 257 202 83 0 chr12 88245475 88245559 -55540896 + L1ME4a LINE L1 6019 6109 -12 1481 90 67 14 chr12 88247912 88248135 -55538320 + MER46A DNA MER2_type 1 235 -1 23 0 0 0 chr12 88248358 88248381 -55538074 + AT_rich Low_complexity Low_complexity 1 23 0 9046 209 50 8 chr12 88249429 88251300 -55535155 + L1M2c LINE L1 3 1955 -4834 2339 76 0 0 chr12 88251300 88251590 -55534865 - AluY SINE Alu -21 290 1 9046 209 50 8 chr12 88251590 88251601 -55534854 + L1M2c LINE L1 1955 1964 -4825 294 315 11 0 chr12 88252504 88252593 -55533862 - MLT1F1 LTR MaLR -443 124 35 386 174 35 0 chr12 88252593 88252679 -55533776 - L1MC3 LINE L1 -688 7097 7009 5418 158 41 74 chr12 88253137 88253259 -55533196 - L1MCa LINE L1 -5247 1179 1055 1810 191 3 0 chr12 88253259 88253568 -55532887 - AluJo SINE Alu -2 310 1 5418 158 41 74 chr12 88253568 88254638 -55531817 - L1MCa LINE L1 -5371 1055 26 24 0 0 0 chr12 88254837 88254861 -55531594 + AT_rich Low_complexity Low_complexity 1 24 0 361 241 129 0 chr12 88255206 88255322 -55531133 - MIR SINE MIR -12 250 120 243 353 123 55 chr12 88256860 88257316 -55529139 + L2 LINE L2 2490 2976 -338 393 277 10 0 chr12 88257911 88258012 -55528443 + MIR SINE MIR 122 223 -39 247 313 199 28 chr12 88258476 88258687 -55527768 + L2 LINE L2 2835 3081 -191 413 286 32 16 chr12 88258803 88258992 -55527463 + Charlie7 DNA MER1_type 2420 2611 -1 339 232 49 0 chr12 88259014 88259096 -55527359 + L2 LINE L2 3185 3270 -2 591 249 67 0 chr12 88259292 88259457 -55526998 - MIR SINE MIR 0 262 87 227 300 110 0 chr12 88259989 88260089 -55526366 + MIR SINE MIR 100 210 -52 977 170 0 0 chr12 88260408 88260561 -55525894 - FRAM SINE Alu -26 150 1 525 172 62 28 chr12 88260780 88260925 -55525530 + Charlie2 DNA MER1_type 2258 2407 -455 756 271 55 17 chr12 88261440 88261676 -55524779 - MIR SINE MIR 0 262 18 880 289 80 36 chr12 88261968 88262495 -55523960 - L2 LINE L2 -127 3186 2636 217 347 73 10 chr12 88263057 88263172 -55523283 + MIR SINE MIR 39 160 -48 758 295 57 24 chr12 88263516 88263885 -55522570 - L1ME3A LINE L1 -219 5951 5571 * 3419 205 50 10 chr12 88263880 88264140 -55522315 - L1 LINE L1 -2947 3199 2951 2418 84 0 0 chr12 88264140 88264449 -55522006 + AluSx SINE Alu 1 309 -3 3419 205 50 10 chr12 88264449 88265019 -55521436 - L1 LINE L1 -3195 2951 2335 849 198 32 0 chr12 88265019 88265176 -55521279 - Tigger2 DNA MER2_type -1 2717 2556 * 4260 168 40 6 chr12 88265172 88265969 -55520486 - Tigger2 DNA MER2_type -1862 856 33 383 258 53 8 chr12 88265974 88266106 -55520349 - L1MEc LINE L1 -3054 4511 4374 680 191 44 67 chr12 88266134 88266365 -55520090 - L1MEc LINE L1 -3831 3734 3535 916 215 52 17 chr12 88266368 88266656 -55519799 - L1 LINE L1 -4280 3285 2988 187 327 147 19 chr12 88270534 88270690 -55515765 + MIR SINE MIR 48 223 -39 249 292 104 19 chr12 88270808 88270962 -55515493 + MIR SINE MIR 96 262 0 828 264 32 52 chr12 88270996 88271246 -55515209 - MIR SINE MIR 0 262 18 34 0 0 0 chr12 88271408 88271442 -55515013 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr12 88272496 88272540 -55513915 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr12 88272725 88272769 -55513686 + AT_rich Low_complexity Low_complexity 1 44 0 26 64 0 0 chr12 88272876 88272923 -55513532 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 88273923 88273945 -55512510 + AT_rich Low_complexity Low_complexity 1 22 0 306 238 99 17 chr12 88274185 88274366 -55512089 - HAL1 LINE L1 -1431 1076 881 205 167 0 42 chr12 88274681 88274729 -55511726 + T-rich Low_complexity Low_complexity 4 49 0 2082 142 12 6 chr12 88274784 88275109 -55511346 + MER47A DNA MER2_type 39 365 -1 727 196 48 48 chr12 88275116 88275305 -55511150 - L1MA9 LINE L1 -89 6223 6035 40 0 0 0 chr12 88275590 88275630 -55510825 + AT_rich Low_complexity Low_complexity 1 40 0 36 23 0 0 chr12 88276706 88276749 -55509706 + AT_rich Low_complexity Low_complexity 1 43 0 850 148 18 8 chr12 88276996 88277141 -55509314 + L1MC/D LINE L1 5281 5423 -897 4172 139 16 25 chr12 88277141 88277881 -55508574 + L1MA4A LINE L1 5543 6289 -14 802 239 23 27 chr12 88277881 88278140 -55508315 - MIR SINE MIR 0 262 5 850 148 18 8 chr12 88278140 88278165 -55508290 + L1MC/D LINE L1 5422 5448 -872 600 263 99 96 chr12 88278476 88278841 -55507614 + MLT1J LTR MaLR 31 396 -115 317 250 57 0 chr12 88278947 88279035 -55507420 - L1M4 LINE L1 -2886 4679 4587 17028 97 19 5 chr12 88279042 88281961 -55504494 - L1PA7 LINE L1 -13 6456 3579 222 91 0 0 chr12 88281961 88281994 -55504461 + (TTG)n Simple_repeat Simple_repeat 1 33 0 17028 97 19 5 chr12 88281994 88282336 -55504119 - L1PA7 LINE L1 -2890 3579 3155 1914 139 7 3 chr12 88282336 88282631 -55503824 - AluY SINE Alu -15 296 1 17028 97 19 5 chr12 88282631 88282697 -55503758 - L1PA7 LINE L1 -3314 3155 3091 6558 121 109 153 chr12 88282697 88284472 -55501983 + pTR5 LTR ERV1 743 2438 0 1072 117 12 0 chr12 88284475 88284637 -55501818 - L1PA7 LINE L1 -3367 3094 2931 6558 158 2 17 chr12 88284637 88285812 -55500643 - L1PA7 LINE L1 -3912 2549 1393 1022 115 0 0 chr12 88285814 88285953 -55500502 - L1PA7 LINE L1 -6322 139 1 17064 186 57 28 chr12 88285958 88290407 -55496048 - L1M4 LINE L1 -2972 4593 16 1502 81 14 9 chr12 88290441 88290664 -55495791 - L1PA6 LINE L1 -2 6152 5929 639 279 70 37 chr12 88290860 88291132 -55495323 + MER68 LTR ERV1 236 516 -46 21 0 0 0 chr12 88291179 88291200 -55495255 + AT_rich Low_complexity Low_complexity 1 21 0 384 275 28 18 chr12 88291505 88291614 -55494841 + MLT1H LTR MaLR 177 286 -263 348 198 16 40 chr12 88291727 88291853 -55494602 + T-rich Low_complexity Low_complexity 1 123 0 29607 112 11 48 chr12 88291854 88298304 -55488151 - L1PA7 LINE L1 0 6154 12 273 213 16 0 chr12 88298315 88298376 -55488079 + MLT1J LTR MaLR 488 549 0 1990 152 0 0 chr12 88298486 88298776 -55487679 + AluSq SINE Alu 1 290 -23 25 0 0 0 chr12 88299776 88299801 -55486654 + AT_rich Low_complexity Low_complexity 1 25 0 2140 120 3 0 chr12 88299805 88300097 -55486358 - AluSx SINE Alu -19 293 1 219 254 56 0 chr12 88300438 88300509 -55485946 - MIR SINE MIR -96 166 92 257 351 137 14 chr12 88301181 88301392 -55485063 - L2 LINE L2 -219 3053 2817 241 301 66 108 chr12 88301553 88301719 -55484736 + MIR SINE MIR 49 207 -55 227 0 0 83 chr12 88303012 88303048 -55483407 + (T)n Simple_repeat Simple_repeat 1 33 0 7526 29 0 0 chr12 88303052 88304661 -55481794 - L1HS LINE L1 0 6155 4547 22770 137 167 6 chr12 88304664 88309884 -55476571 + L1MA3 LINE L1 235 6305 0 21 0 0 0 chr12 88310235 88310256 -55476199 + AT_rich Low_complexity Low_complexity 1 21 0 802 127 0 14 chr12 88310977 88311119 -55475336 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 709 194 0 8 chr12 88311177 88311349 -55475106 + FLAM_C SINE Alu 1 171 0 1779 254 46 48 chr12 88311388 88311975 -55474480 + L1MA4A LINE L1 22 607 -6958 664 43 0 21 chr12 88312078 88312172 -55474283 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 660 201 8 15 chr12 88312235 88312407 -55474048 + FLAM_C SINE Alu 1 171 0 17791 188 53 16 chr12 88312430 88316603 -55469852 + L1MB1 LINE L1 9 4391 -3174 2235 113 0 6 chr12 88316603 88316914 -55469541 + AluY SINE Alu 1 309 -2 17791 188 53 16 chr12 88316914 88317665 -55468790 + L1MB1 LINE L1 4391 5113 -2452 1714 178 162 5 chr12 88317679 88318049 -55468406 - MSTA LTR MaLR 0 428 1 4339 152 26 31 chr12 88318049 88318825 -55467630 - MSTA-int LTR MaLR 0 1580 809 896 213 17 64 chr12 88319474 88319709 -55466746 - MLT1A1 LTR MaLR 0 365 142 10274 78 10 10 chr12 88319725 88321932 -55464523 - L1PA16 LINE L1 -8 6158 3959 378 0 0 0 chr12 88321977 88322019 -55464436 + (CA)n Simple_repeat Simple_repeat 2 43 0 1409 176 34 62 chr12 88322235 88322588 -55463867 - L1MA10 LINE L1 -43 6291 5949 * 2300 199 55 16 chr12 88322580 88323607 -55462848 + L1MB1 LINE L1 6185 7248 -360 12900 200 91 14 chr12 88323621 88327569 -55458886 + L1MA4A LINE L1 720 5390 -2332 204 40 0 0 chr12 88327569 88327594 -55458861 + (CAA)n Simple_repeat Simple_repeat 3 27 0 12900 200 91 14 chr12 88327594 88330124 -55456331 + L1MA4A LINE L1 5390 7722 0 752 172 30 0 chr12 88330130 88330264 -55456191 + L1MB1 LINE L1 7238 7375 -233 294 295 74 27 chr12 88331756 88331905 -55454550 + MIR SINE MIR 81 236 -26 225 0 0 0 chr12 88333065 88333090 -55453365 + (TA)n Simple_repeat Simple_repeat 2 26 0 840 212 65 16 chr12 88333233 88333417 -55453038 + MER20 DNA MER1_type 27 219 0 2461 27 40 10 chr12 88334612 88334909 -55451546 + AluY SINE Alu 1 306 -5 483 262 9 0 chr12 88335975 88336082 -55450373 - MER70B LTR ERVL -17 561 454 1094 332 86 6 chr12 88337656 88338144 -55448311 - L2 LINE L2 -1577 1737 1211 2017 118 57 0 chr12 88338529 88338808 -55447647 - AluSg SINE Alu -15 295 1 1204 178 88 149 chr12 88338955 88339398 -55447057 - MER47B DNA MER2_type -1 417 2 23 54 0 0 chr12 88340236 88340273 -55446182 + AT_rich Low_complexity Low_complexity 1 37 0 300 53 0 0 chr12 88341157 88341195 -55445260 + (TG)n Simple_repeat Simple_repeat 1 38 0 242 239 147 22 chr12 88341357 88341523 -55444932 - L1ME LINE L1 -436 5730 5536 305 276 91 97 chr12 88341542 88341645 -55444810 + L2 LINE L2 2645 2747 -525 1516 156 45 112 chr12 88341645 88342063 -55444392 - MLT1B LTR MaLR 0 390 1 305 276 91 97 chr12 88342063 88342421 -55444034 + L2 LINE L2 2747 3092 -180 212 0 36 0 chr12 88342459 88342487 -55443968 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2154 100 21 0 chr12 88342490 88342770 -55443685 - AluSg SINE Alu -24 286 1 312 233 100 0 chr12 88342824 88342914 -55443541 - MLT1D LTR MaLR 0 626 528 1094 202 79 5 chr12 88342953 88343249 -55443206 - MLT1D LTR MaLR -152 353 1 341 295 57 48 chr12 88343357 88343584 -55442871 - L1ME LINE L1 -2320 5488 5260 1468 129 9 0 chr12 88343792 88344002 -55442453 - AluSg/x SINE Alu -8 304 93 834 259 186 39 chr12 88344288 88344728 -55441727 + MLT1C LTR MaLR 1 467 0 943 252 33 0 chr12 88345252 88345466 -55440989 + MER58A DNA MER1_type 4 224 0 181 273 45 0 chr12 88345582 88345626 -55440829 + L3 LINE CR1 262 307 -1270 23 54 0 0 chr12 88345940 88345977 -55440478 + AT_rich Low_complexity Low_complexity 1 37 0 269 221 21 84 chr12 88346326 88346421 -55440034 - MLT1K LTR MaLR 0 588 500 575 187 65 0 chr12 88346945 88347052 -55439403 + FLAM_A SINE Alu 2 115 -18 2228 196 21 2 chr12 88348184 88348608 -55437847 + MSTB1 LTR MaLR 1 432 0 316 272 0 12 chr12 88348611 88348692 -55437763 - MLT1I LTR MaLR -232 177 98 214 255 43 0 chr12 88349227 88349274 -55437181 + MIR3 SINE MIR 106 154 -54 372 246 130 7 chr12 88349497 88349635 -55436820 + L1ME2 LINE L1 6000 6154 -10 1079 221 65 4 chr12 88349669 88350140 -55436315 + MER34 LTR ERV1 11 531 -11 1554 269 208 14 chr12 88350252 88351157 -55435298 + L1MC4 LINE L1 6615 7671 -137 2055 180 46 43 chr12 88351157 88351552 -55434903 - LOR1b LTR ERV1 0 461 63 2339 100 0 3 chr12 88351552 88351853 -55434602 - AluSc SINE Alu -6 303 4 2055 180 46 43 chr12 88351853 88351917 -55434538 - LOR1b LTR ERV1 -398 63 1 1554 269 208 14 chr12 88351917 88351971 -55434484 + L1MC4 LINE L1 7671 7713 -95 183 289 0 0 chr12 88353255 88353293 -55433162 + MIR SINE MIR 111 148 -114 442 240 102 79 chr12 88353430 88353684 -55432771 + L1MC4 LINE L1 7751 8010 -32 1436 143 99 57 chr12 88353717 88354031 -55432424 + L1MA9 LINE L1 5697 6023 -289 986 180 123 19 chr12 88354042 88354487 -55431968 + MER34 LTR ERV1 27 542 0 948 193 80 47 chr12 88354496 88354771 -55431684 + L1MA9 LINE L1 6029 6312 0 758 325 92 30 chr12 88354873 88354891 -55431564 + HERV16 LTR ERVL 1749 1764 -3232 1589 163 30 0 chr12 88354891 88355155 -55431300 - AluSq SINE Alu -41 272 1 758 325 92 30 chr12 88355155 88355666 -55430789 + HERV16 LTR ERVL 1764 2311 -2685 1240 256 58 34 chr12 88355765 88356176 -55430279 - MLT1E LTR MaLR -11 582 162 2147 180 39 5 chr12 88356179 88356686 -55429769 - LTR69 LTR ERVL -2 586 1 435 244 174 9 chr12 88356721 88356836 -55429619 - MLT1E LTR MaLR -450 143 10 465 155 0 0 chr12 88357009 88357080 -55429375 + AluY SINE Alu 45 115 -196 * 687 128 0 0 chr12 88357074 88357176 -55429279 + AluSg/x SINE Alu 195 296 -16 290 240 0 0 chr12 88357176 88357251 -55429204 + L1ME LINE L1 5759 5833 -337 24 67 0 0 chr12 88357693 88357738 -55428717 + AT_rich Low_complexity Low_complexity 1 45 0 2129 150 14 3 chr12 88357759 88358120 -55428335 - L1PB1 LINE L1 -4 6147 5783 225 325 48 0 chr12 88358123 88358206 -55428249 + L1MC4 LINE L1 6615 6701 -1341 186 189 0 0 chr12 88358208 88358245 -55428210 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 14177 191 25 10 chr12 88358249 88360538 -55425917 - L1P5 LINE L1 -358 6509 4062 1811 153 0 43 chr12 88360538 88360839 -55425616 - AluSq SINE Alu -25 288 1 14177 191 25 10 chr12 88360839 88362404 -55424051 - L1P5 LINE L1 -2805 4062 2522 246 163 0 20 chr12 88362593 88362642 -55423813 + MER116 DNA Mariner 33 80 0 189 343 0 27 chr12 88364412 88364485 -55421970 + L2 LINE L2 2568 2638 -676 2296 93 0 3 chr12 88365746 88366047 -55420408 + AluY SINE Alu 1 300 -11 183 80 0 0 chr12 88366108 88366133 -55420322 + (T)n Simple_repeat Simple_repeat 1 25 0 13025 90 22 15 chr12 88366160 88368881 -55417574 - L1PA7 LINE L1 -3 6151 3414 1800 163 24 3 chr12 88369068 88369356 -55417099 - AluSx SINE Alu -18 294 1 7098 50 2 0 chr12 88370922 88372085 -55414370 - L1PA4 LINE L1 -20 6135 4971 1990 152 0 0 chr12 88372966 88373256 -55413199 - AluSq SINE Alu -23 290 1 273 213 16 0 chr12 88373366 88373427 -55413028 - MLT1J2 LTR MaLR 0 549 488 31078 114 12 58 chr12 88373438 88379888 -55406567 + L1PA7 LINE L1 12 6151 -3 183 80 0 0 chr12 88379915 88379940 -55406515 + (A)n Simple_repeat Simple_repeat 1 25 0 2320 86 0 3 chr12 88380001 88380302 -55406153 - AluY SINE Alu -11 300 1 189 343 0 27 chr12 88381563 88381636 -55404819 - L2 LINE L2 -676 2638 2568 246 163 0 20 chr12 88383404 88383453 -55403002 - MER116 DNA Mariner 0 80 33 4616 244 40 20 chr12 88383643 88385222 -55401233 + L1PBa LINE L1 2522 4214 -2648 1646 169 0 46 chr12 88385222 88385524 -55400931 + AluSq SINE Alu 1 288 -25 4616 244 40 20 chr12 88385524 88385601 -55400854 + L1PBa LINE L1 4214 4288 -2574 1208 105 22 48 chr12 88385789 88386018 -55400437 + L1P LINE L1 3189 3411 -2735 471 277 98 76 chr12 88386065 88386191 -55400264 - MLT1J2 LTR MaLR -21 429 307 503 200 0 0 chr12 88386191 88386286 -55400169 - MER34 LTR ERV1 -447 95 1 471 277 98 76 chr12 88386286 88386433 -55400022 - MLT1J2 LTR MaLR -143 307 54 238 304 97 48 chr12 88386598 88386805 -55399650 + L2 LINE L2 2955 3171 -142 33 0 0 0 chr12 88386989 88387022 -55399433 + AT_rich Low_complexity Low_complexity 1 33 0 228 278 119 46 chr12 88387675 88387826 -55398629 + MIR SINE MIR 49 210 -52 206 258 0 15 chr12 88387913 88387979 -55398476 + T-rich Low_complexity Low_complexity 3 67 0 21 0 0 0 chr12 88388931 88388952 -55397503 + AT_rich Low_complexity Low_complexity 1 21 0 262 193 0 64 chr12 88390021 88390130 -55396325 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 241 333 93 31 chr12 88390972 88391101 -55395354 - MIR SINE MIR -69 193 57 388 309 98 21 chr12 88392552 88392746 -55393709 + MIR SINE MIR 42 250 -12 180 0 0 0 chr12 88393411 88393431 -55393024 + (CA)n Simple_repeat Simple_repeat 1 20 0 280 342 176 10 chr12 88393650 88393849 -55392606 - MIR SINE MIR -10 252 21 392 250 90 28 chr12 88394836 88394980 -55391475 - MER5A DNA MER1_type 0 189 37 251 318 86 20 chr12 88395163 88395314 -55391141 - MLT1I LTR MaLR -4 405 245 332 340 129 10 chr12 88395566 88395760 -55390695 + MIR SINE MIR 46 262 0 196 340 53 34 chr12 88395844 88396050 -55390405 - L2 LINE L2 -2 3311 3102 337 127 70 0 chr12 88397364 88397435 -55389020 + L1MC2 LINE L1 6269 6344 0 253 235 0 0 chr12 88399052 88399103 -55387352 - MLT1E1 LTR MaLR 0 654 604 2151 216 106 44 chr12 88399148 88399740 -55386715 - MLT1E1 LTR MaLR -25 629 1 1595 197 64 29 chr12 88402346 88402721 -55383734 - MLT1B LTR MaLR -2 388 1 2580 98 24 11 chr12 88402941 88403310 -55383145 + THE1C LTR MaLR 1 374 -1 8302 186 91 16 chr12 88403669 88406972 -55379483 - L1MA4 LINE L1 -13 7706 1897 459 388 36 27 chr12 88407343 88407786 -55378669 - L1MA4 LINE L1 -5508 1978 1532 1895 121 35 0 chr12 88407960 88408249 -55378206 + AluSc SINE Alu 1 299 -10 1928 172 26 26 chr12 88408703 88409029 -55377426 + MLT1B LTR MaLR 1 329 -61 2823 6 0 3 chr12 88409029 88409340 -55377115 - AluYa5 SINE Alu -1 310 1 1928 172 26 26 chr12 88409340 88409402 -55377053 + MLT1B LTR MaLR 328 389 -1 1867 194 82 2 chr12 88409454 88409856 -55376599 - Tigger2a DNA MER2_type 0 434 1 453 151 32 11 chr12 88410085 88410178 -55376277 + L1ME1 LINE L1 5892 5986 -180 785 183 27 89 chr12 88410244 88410468 -55375987 + MER6B DNA MER2_type 1 210 0 14182 68 16 13 chr12 88411001 88413736 -55372719 - L1PA4 LINE L1 -3 6152 3414 1815 160 24 3 chr12 88413923 88414211 -55372244 - AluSx SINE Alu -18 294 1 28072 42 9 1 chr12 88415776 88420039 -55366416 - L1PA4 LINE L1 -20 6135 1844 41191 41 30 2 chr12 88421217 88427196 -55359259 - L1PA2 LINE L1 0 6155 1 428 326 67 8 chr12 88428209 88428448 -55358007 - MLT1L LTR MaLR -19 596 344 360 345 21 7 chr12 88429362 88429504 -55356951 + LTR16A LTR ERVL 305 448 -2 309 296 59 59 chr12 88429587 88429773 -55356682 - L2 LINE L2 0 3313 3128 913 308 58 29 chr12 88429793 88430137 -55356318 - L2 LINE L2 -979 2335 1982 319 314 154 6 chr12 88430799 88430955 -55355500 - MIR SINE MIR -79 183 5 705 238 155 0 chr12 88432277 88432458 -55353997 + MER3 DNA MER1_type 1 209 0 652 372 166 11 chr12 88432950 88433992 -55352463 - L2 LINE L2 -339 2975 1772 6022 83 64 11 chr12 88434003 88435021 -55351434 + L1PA8A LINE L1 5026 6125 -6 420 322 70 10 chr12 88435181 88435380 -55351075 + MIR SINE MIR 49 259 -3 367 354 48 37 chr12 88435466 88435737 -55350718 + L2 LINE L2 2639 2912 -402 666 269 151 14 chr12 88435875 88436094 -55350361 + MIR SINE MIR 12 260 -2 1169 233 81 50 chr12 88439310 88439457 -55346998 + MSTD LTR MaLR 1 142 -254 7788 19 0 0 chr12 88439457 88440963 -55345492 - L1PA3 LINE L1 -4 6151 4646 1169 233 81 50 chr12 88440963 88441197 -55345258 + MSTD LTR MaLR 142 394 -2 1418 216 59 74 chr12 88442003 88442476 -55343979 + MER31B LTR ERV1 1 466 0 505 138 0 0 chr12 88442984 88443064 -55343391 - MADE1 DNA Mariner 0 80 1 1328 197 48 115 chr12 88443548 88444054 -55342401 - MLT1C LTR MaLR 0 505 3 602 303 83 58 chr12 88445898 88446261 -55340194 + L2 LINE L2 2942 3313 0 6707 63 17 2 chr12 88446565 88447934 -55338521 + L1PA7 LINE L1 4762 6149 -5 377 256 109 87 chr12 88448169 88448267 -55338188 + L1M4 LINE L1 2342 2436 -3710 2331 90 0 10 chr12 88448267 88448579 -55337876 + AluSc SINE Alu 1 309 0 377 256 109 87 chr12 88448579 88449065 -55337390 + L1M4 LINE L1 2436 2939 -3207 655 305 184 30 chr12 88449069 88449904 -55336551 + L1M4 LINE L1 2973 3936 -2210 261 283 44 9 chr12 88450765 88450878 -55335577 + L1M4 LINE L1 4886 5002 -1144 2399 105 14 3 chr12 88453168 88453520 -55332935 + L1PA14 LINE L1 5792 6147 -14 616 300 53 18 chr12 88453601 88453828 -55332627 + MLT1C LTR MaLR 233 467 0 513 313 90 0 chr12 88454259 88454425 -55332030 + MER5A DNA MER1_type 3 183 -6 7469 178 18 27 chr12 88454429 88455860 -55330595 + L1PA6 LINE L1 1 1418 -4728 42584 52 3 2 chr12 88455860 88462008 -55324447 + L1PA4 LINE L1 1 6155 0 29068 76 5 1 chr12 88462009 88466738 -55319717 + L1PA6 LINE L1 1408 6150 -4 878 333 106 22 chr12 88466986 88467966 -55318489 - L2 LINE L2 -19 3294 2227 349 141 0 0 chr12 88468303 88468367 -55318088 - L1MA9 LINE L1 -5 6307 6244 243 0 0 0 chr12 88468374 88468401 -55318054 + (CA)n Simple_repeat Simple_repeat 2 28 0 957 188 61 44 chr12 88468418 88468647 -55317808 - L1MA9 LINE L1 -159 6153 5921 186 143 0 0 chr12 88469592 88469627 -55316828 + (GA)n Simple_repeat Simple_repeat 2 36 0 256 179 209 0 chr12 88470572 88470639 -55315816 - MLT1J2 LTR MaLR -364 86 6 2063 129 0 0 chr12 88470851 88471131 -55315324 + AluSg SINE Alu 1 280 -30 234 0 0 0 chr12 88471144 88471170 -55315285 + (CA)n Simple_repeat Simple_repeat 2 27 0 314 317 0 10 chr12 88471170 88471271 -55315184 - L1MC4 LINE L1 -1339 6703 6604 461 260 75 20 chr12 88472904 88473050 -55313405 + MIR SINE MIR 16 169 -93 825 244 64 45 chr12 88473050 88473361 -55313094 + LTR28 LTR ERV1 1 317 -703 562 252 18 50 chr12 88473363 88473535 -55312920 + MER52A LTR ERV1 335 1231 -29 226 316 42 21 chr12 88473757 88473852 -55312603 - L2 LINE L2 -5 3308 3212 262 299 104 37 chr12 88473988 88474122 -55312333 - MIR SINE MIR -54 208 66 327 303 74 16 chr12 88474325 88474447 -55312008 - MER5B DNA MER1_type -46 132 4 543 193 203 21 chr12 88474830 88475120 -55311335 - MER69 DNA AcHobo -3 2523 2181 1574 293 46 6 chr12 88475146 88475647 -55310808 - MER69 DNA AcHobo -598 628 108 588 253 53 0 chr12 88475816 88475966 -55310489 - MIR SINE MIR -43 219 62 290 228 0 0 chr12 88477075 88477132 -55309323 - L2 LINE L2 -3 3310 3254 623 274 163 12 chr12 88479828 88480073 -55306382 + L2 LINE L2 3032 3313 0 1906 143 10 3 chr12 88480129 88480423 -55306032 + AluSg SINE Alu 1 296 -14 186 133 0 0 chr12 88481410 88481440 -55305015 + (T)n Simple_repeat Simple_repeat 1 30 0 241 244 116 35 chr12 88481440 88481526 -55304929 - MIR SINE MIR -91 171 79 2049 33 0 0 chr12 88481542 88481787 -55304668 - L1PA5 LINE L1 -2 6152 5908 7032 119 4 0 chr12 88485143 88486216 -55300239 - L1P LINE L1 -1243 4903 3827 4150 67 0 9 chr12 88486379 88486976 -55299479 + L1PA2 LINE L1 5577 6168 0 463 331 139 35 chr12 88486977 88487373 -55299082 - L2 LINE L2 -1268 2046 1610 591 225 33 20 chr12 88488154 88488305 -55298150 + MER2 DNA MER2_type 1 153 -192 331 227 27 0 chr12 88488374 88488449 -55298006 + MER2 DNA MER2_type 269 345 0 2170 190 9 7 chr12 88488580 88489011 -55297444 - Tigger1 DNA MER2_type -511 1907 1476 2852 190 45 2 chr12 88489012 88489617 -55296838 - Tigger1 DNA MER2_type -1335 1083 453 696 319 92 58 chr12 88489887 88490473 -55295982 - L2 LINE L2 -513 2801 2196 290 228 0 0 chr12 88491291 88491348 -55295107 + L2 LINE L2 3254 3310 -3 1315 333 99 41 chr12 88492307 88493400 -55293055 + L2 LINE L2 883 2038 -1276 189 0 0 0 chr12 88493411 88493432 -55293023 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1801 104 0 4 chr12 88493432 88493705 -55292750 - L1PA2 LINE L1 -11 6144 5873 425 242 152 0 chr12 88496054 88496186 -55290269 + MIR SINE MIR 97 248 -14 421 156 78 0 chr12 88496213 88496303 -55290152 - L1MA8 LINE L1 -7 6284 6188 502 103 28 47 chr12 88496304 88496411 -55290044 - L1MA8 LINE L1 -200 6091 5987 7492 127 8 2 chr12 88496512 88497689 -55288766 - THE1A-int LTR MaLR -396 1184 1 823 202 6 6 chr12 88497689 88497872 -55288583 - THE1A LTR MaLR 0 355 173 798 94 8 0 chr12 88497973 88498101 -55288354 - L1M1 LINE L1 -842 5461 5333 311 136 45 0 chr12 88498101 88498154 -55288301 + L1MA4A LINE L1 6229 6297 -6 1894 235 59 35 chr12 88498419 88498960 -55287495 + MER68 LTR ERV1 1 554 -8 1350 143 12 29 chr12 88499326 88499570 -55286885 - THE1B LTR MaLR 0 364 125 844 242 13 13 chr12 88499673 88499904 -55286551 - MLT1A1 LTR MaLR -109 256 26 9258 105 7 6 chr12 88501046 88502472 -55283983 - L1P LINE L1 -4695 1451 24 896 232 72 25 chr12 88502719 88503121 -55283334 - MER113 DNA MER1_type? 0 521 70 23 33 0 0 chr12 88503828 88503858 -55282597 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 88504002 88504026 -55282429 + AT_rich Low_complexity Low_complexity 1 24 0 228 292 45 34 chr12 88506214 88506303 -55280152 + MIR3 SINE MIR 83 172 -36 324 132 0 29 chr12 88506402 88506470 -55279985 + L1MA1 LINE L1 6237 6302 0 23 0 0 0 chr12 88507094 88507117 -55279338 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr12 88507457 88507494 -55278961 + AT_rich Low_complexity Low_complexity 1 37 0 2814 334 53 24 chr12 88507997 88509113 -55277342 + L2 LINE L2 865 1946 -1367 246 32 0 0 chr12 88509113 88509144 -55277311 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4975 12 0 0 chr12 88509144 88509705 -55276750 - L1PA2 LINE L1 -18 6137 5577 2814 334 53 24 chr12 88509705 88510563 -55275892 + L2 LINE L2 1945 3077 -236 24 53 0 0 chr12 88511145 88511183 -55275272 + AT_rich Low_complexity Low_complexity 1 38 0 12146 113 8 4 chr12 88511283 88512830 -55273625 - HERVL LTR ERVL -1445 4209 2671 2251 100 0 3 chr12 88512830 88513120 -55273335 + AluSg1 SINE Alu 12 300 -9 12146 113 8 4 chr12 88513120 88514018 -55272437 - HERVL LTR ERVL -2983 2671 1779 7314 38 9 0 chr12 88514018 88515087 -55271368 - L1PA4 LINE L1 -1 6154 5082 12146 113 8 4 chr12 88515087 88516211 -55270244 - HERVL LTR ERVL -3875 1779 568 24 53 0 0 chr12 88516616 88516654 -55269801 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 88516783 88516806 -55269649 + AT_rich Low_complexity Low_complexity 1 23 0 180 250 0 0 chr12 88517498 88517534 -55268921 - MER5B DNA MER1_type -15 163 128 22 0 0 0 chr12 88517642 88517664 -55268791 + AT_rich Low_complexity Low_complexity 1 22 0 1019 232 30 9 chr12 88517940 88518173 -55268282 - MER8 DNA MER2_type -1 238 1 27 0 0 0 chr12 88518970 88518997 -55267458 + AT_rich Low_complexity Low_complexity 1 27 0 393 200 0 0 chr12 88519058 88519138 -55267317 - MER116 DNA Mariner 0 80 1 403 348 14 7 chr12 88519314 88519452 -55267003 - L2 LINE L2 0 3272 3134 311 296 38 30 chr12 88519672 88519804 -55266651 - MIR SINE MIR -89 173 41 2410 191 126 23 chr12 88520793 88521505 -55264950 - LTR1B LTR ERV1 0 785 1 360 271 65 18 chr12 88522097 88522267 -55264188 + L1ME3A LINE L1 5593 5770 -400 978 261 33 7 chr12 88522273 88522576 -55263879 + L1ME3A LINE L1 5836 6146 -24 368 320 56 0 chr12 88522788 88522913 -55263542 + MIR SINE MIR 31 162 -100 23 33 0 0 chr12 88523651 88523681 -55262774 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 88523825 88523849 -55262606 + AT_rich Low_complexity Low_complexity 1 24 0 212 276 0 0 chr12 88524985 88525043 -55261412 + A-rich Low_complexity Low_complexity 5 62 0 286 293 122 24 chr12 88525499 88525622 -55260833 + MIR SINE MIR 17 151 -111 1875 168 81 24 chr12 88525930 88526439 -55260016 - MLT2A2 LTR ERVL 0 554 1 275 229 12 36 chr12 88526842 88526925 -55259530 + CT-rich Low_complexity Low_complexity 2 82 0 14625 110 5 19 chr12 88528501 88529279 -55257176 - HERVL-A2 LTR ERVL -118 5536 4748 1607 211 146 87 chr12 88529279 88530059 -55256396 + LTR1B LTR ERV1 1 826 0 14625 110 5 19 chr12 88530059 88531521 -55254934 - HERVL-A2 LTR ERVL -906 4748 3328 3733 135 3 7 chr12 88531622 88532222 -55254233 - HERVL LTR ERVL -4526 1128 531 242 181 83 14 chr12 88532259 88532331 -55254124 + L2 LINE L2 2188 2264 -1050 2645 91 8 0 chr12 88534009 88534361 -55252094 - THE1A LTR MaLR 0 355 1 11423 101 7 1 chr12 88534361 88535932 -55250523 - THE1A-int LTR MaLR 0 1580 1 2600 102 6 0 chr12 88535932 88536285 -55250170 - THE1A LTR MaLR 0 355 1 228 292 73 67 chr12 88537058 88537236 -55249219 + MLT1F LTR MaLR 136 314 -235 330 176 48 0 chr12 88537292 88537375 -55249080 + MLT1F LTR MaLR 454 547 -2 1339 177 116 61 chr12 88537497 88537841 -55248614 - MLT1A1 LTR MaLR -2 363 1 1492 207 130 18 chr12 88537939 88538340 -55248115 + MLT1C LTR MaLR 15 460 -7 253 224 0 0 chr12 88538662 88538711 -55247744 + Tigger1 DNA MER2_type 1 49 -2369 5416 146 46 1 chr12 88539165 88540142 -55246313 + Tigger1 DNA MER2_type 63 1083 -1335 4301 148 10 1 chr12 88540143 88540866 -55245589 + Tigger1 DNA MER2_type 1476 2204 -214 240 366 11 0 chr12 88542603 88542696 -55243759 + L2 LINE L2 3220 3313 0 316 267 23 122 chr12 88543105 88543236 -55243219 - L2 LINE L2 -1 3271 3154 579 224 43 31 chr12 88544650 88544811 -55241644 - MER45 DNA AcHobo -1 1580 1418 2373 219 14 16 chr12 88544816 88545324 -55241131 - MER45B DNA AcHobo -533 507 1 1520 221 9 12 chr12 88545454 88545794 -55240661 + MLT1A1 LTR MaLR 15 353 -12 214 306 16 0 chr12 88545991 88546053 -55240402 - L2 LINE L2 -5 3308 3246 5216 167 20 14 chr12 88546160 88547439 -55239016 + L1MA4A LINE L1 4929 6211 -92 901 246 10 5 chr12 88547541 88547736 -55238719 - MER45 DNA AcHobo -844 196 1 1745 207 8 22 chr12 88547847 88548205 -55238250 + MLT1A1 LTR MaLR 1 353 -12 228 306 16 0 chr12 88548402 88548464 -55237991 - L2 LINE L2 -5 3308 3246 784 325 127 28 chr12 88548565 88549092 -55237363 - L2 LINE L2 0 3313 2723 22 0 0 0 chr12 88549488 88549510 -55236945 + AT_rich Low_complexity Low_complexity 1 22 0 2281 220 59 33 chr12 88549760 88550300 -55236155 + MER68 LTR ERV1 1 554 -8 2299 131 11 19 chr12 88550666 88551033 -55235422 - THE1B LTR MaLR 0 364 1 3645 93 11 13 chr12 88553254 88553791 -55232664 + L1PA12 LINE L1 5322 5857 -311 5387 112 13 7 chr12 88553891 88554711 -55231744 + L1PA13 LINE L1 5333 6157 -6 191 304 0 0 chr12 88555460 88555506 -55230949 + MIR SINE MIR 81 126 -136 189 308 0 0 chr12 88556822 88556874 -55229581 - MIR SINE MIR 0 262 211 2147 248 33 57 chr12 88557059 88557793 -55228662 + L1MEc LINE L1 83 798 -5598 354 187 33 33 chr12 88557893 88557984 -55228471 + L1MDa LINE L1 21 111 -6429 468 189 33 0 chr12 88557986 88558076 -55228379 - Tigger5 DNA MER2_type 0 2323 2231 346 230 0 14 chr12 88558124 88558198 -55228257 - Tigger5 DNA MER2_type 0 2323 2251 314 257 0 64 chr12 88558200 88558309 -55228146 + L1MDa LINE L1 95 196 -6344 265 194 0 122 chr12 88561168 88561266 -55225189 + MER63A DNA MER1_type 1 86 0 * 311 178 0 0 chr12 88561243 88561288 -55225167 + MER2 DNA MER2_type 1 45 -300 483 269 22 8 chr12 88561402 88561536 -55224919 + MER63A DNA MER1_type 75 210 0 294 333 18 9 chr12 88562281 88562392 -55224063 + MIR SINE MIR 1 112 -150 464 299 187 31 chr12 88562397 88562782 -55223673 + MLT1J2 LTR MaLR 6 450 0 477 111 0 0 chr12 88562987 88563059 -55223396 - AluSp/q SINE Alu -12 301 230 1691 230 52 78 chr12 88563534 88564174 -55222281 - MLT1E2 LTR MaLR -3 623 1 1858 168 56 48 chr12 88564375 88564768 -55221687 - MSTB1 LTR MaLR -15 417 22 1560 164 21 11 chr12 88564768 88565048 -55221407 + AluJb SINE Alu 30 312 0 21 36 0 0 chr12 88565094 88565122 -55221333 + AT_rich Low_complexity Low_complexity 1 28 0 289 325 89 36 chr12 88565149 88565429 -55221026 - L2 LINE L2 0 3313 3019 198 0 0 0 chr12 88566525 88566547 -55219908 + (A)n Simple_repeat Simple_repeat 1 22 0 1409 281 106 13 chr12 88567248 88567434 -55219021 + L1MDa LINE L1 1400 1567 -4975 354 23 0 0 chr12 88567434 88567477 -55218978 + (CA)n Simple_repeat Simple_repeat 2 44 0 1409 281 106 13 chr12 88567477 88567839 -55218616 + L1MDa LINE L1 1567 1999 -4543 21 0 0 0 chr12 88567902 88567923 -55218532 + AT_rich Low_complexity Low_complexity 1 21 0 2189 257 119 19 chr12 88567957 88569277 -55217178 + L1MDa LINE L1 2237 3906 -2634 548 215 122 13 chr12 88570374 88570531 -55215924 + MIR SINE MIR 73 248 -14 1269 112 50 22 chr12 88570558 88570879 -55215576 - L1MA8 LINE L1 -7 6284 5856 25 51 0 0 chr12 88570896 88570935 -55215520 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 88571060 88571085 -55215370 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 88571848 88571870 -55214585 + (A)n Simple_repeat Simple_repeat 1 22 0 26 50 0 0 chr12 88572700 88572740 -55213715 + AT_rich Low_complexity Low_complexity 1 40 0 717 303 108 70 chr12 88575963 88576547 -55209908 + L2 LINE L2 2196 2801 -513 334 378 47 0 chr12 88576625 88576818 -55209637 + L2 LINE L2 2899 3100 -213 563 302 58 21 chr12 88576821 88577063 -55209392 + MIR SINE MIR 2 252 -10 181 290 39 77 chr12 88577060 88577267 -55209188 + L2 LINE L2 3111 3309 -4 * 736 309 54 81 chr12 88578633 88578727 -55207728 + MLT1K LTR MaLR 58 153 -435 1657 188 21 43 chr12 88578727 88579100 -55207355 + MLT1A1 LTR MaLR 1 365 0 736 309 54 81 chr12 88579100 88579523 -55206932 + MLT1K LTR MaLR 153 561 -27 642 209 14 0 chr12 88580171 88580311 -55206144 + MLT1E LTR MaLR 46 175 -418 562 199 58 2 chr12 88580414 88580621 -55205834 + MLT1E1 LTR MaLR 320 654 0 190 357 45 0 chr12 88582811 88582923 -55203532 + L2 LINE L2 3190 3306 -7 1488 203 116 66 chr12 88583523 88583962 -55202493 - MLT1C LTR MaLR -1 466 6 1682 217 3 9 chr12 88584397 88584734 -55201721 - MLT1A1 LTR MaLR -19 346 12 188 269 109 86 chr12 88586094 88586269 -55200186 + L3 LINE CR1 1399 1577 0 23 54 0 0 chr12 88586496 88586533 -55199922 + AT_rich Low_complexity Low_complexity 1 37 0 221 345 18 9 chr12 88588489 88588599 -55197856 - L2 LINE L2 -1 3312 3202 666 203 37 6 chr12 88588760 88588923 -55197532 + MLT2D LTR ERVL 1 168 -246 2450 161 7 5 chr12 88589024 88589428 -55197027 - THE1A-int LTR MaLR -883 697 293 981 195 107 0 chr12 88589439 88589654 -55196801 - MLT2A1 LTR ERVL 0 444 207 1614 139 22 0 chr12 88589654 88589928 -55196527 - THE1A-int LTR MaLR -1299 281 2 2149 149 6 0 chr12 88589929 88590277 -55196178 - THE1A LTR MaLR 0 355 6 26 30 0 0 chr12 88591326 88591359 -55195096 + AT_rich Low_complexity Low_complexity 1 33 0 593 51 0 0 chr12 88591449 88591528 -55194927 + L1MA1 LINE L1 6220 6298 -4 184 191 71 0 chr12 88591568 88591610 -55194845 + L2 LINE L2 3229 3273 -40 400 336 113 14 chr12 88591840 88592194 -55194261 + L1M4 LINE L1 492 880 -5662 2537 108 8 0 chr12 88592249 88592601 -55193854 - THE1A LTR MaLR 0 355 1 9391 107 8 123 chr12 88592601 88593897 -55192558 - THE1A-int LTR MaLR 0 1580 306 1260 126 107 0 chr12 88593897 88594112 -55192343 - MLT2A1 LTR ERVL 0 444 207 9391 107 8 123 chr12 88594112 88594386 -55192069 - THE1A-int LTR MaLR -1274 306 2 2442 115 6 0 chr12 88594387 88594735 -55191720 - THE1A LTR MaLR 0 355 6 2052 243 99 54 chr12 88594741 88595501 -55190954 + L1M4 LINE L1 909 1759 -4887 354 23 0 0 chr12 88595501 88595544 -55190911 + (CA)n Simple_repeat Simple_repeat 2 44 0 2052 243 99 54 chr12 88595544 88595906 -55190549 + L1M4 LINE L1 1759 2103 -4543 21 0 0 0 chr12 88595969 88595990 -55190465 + AT_rich Low_complexity Low_complexity 1 21 0 273 254 127 37 chr12 88596024 88596268 -55190187 + L1M4 LINE L1 2341 2606 -4040 948 269 34 58 chr12 88596441 88596996 -55189459 + L1M4 LINE L1 4154 4695 -1949 1076 185 13 46 chr12 88597001 88597239 -55189216 + MER46A DNA MER2_type 7 236 0 2494 231 76 36 chr12 88597239 88598211 -55188244 + L1M4 LINE L1 4697 5707 -937 422 283 0 0 chr12 88598201 88598307 -55188148 + L1M2 LINE L1 2556 2661 -4188 * 1580 178 29 0 chr12 88648313 88648627 -55137828 - L1MA9 LINE L1 -347 5965 5643 309 196 21 10 chr12 88648626 88648723 -55137732 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 * 717 167 95 0 chr12 88648739 88648865 -55137590 - L1MA9 LINE L1 -663 5649 5512 15377 31 4 1 chr12 88648897 88651510 -55134945 - L1PA3 LINE L1 -3 6152 3533 468 228 69 74 chr12 88651795 88651997 -55134458 + L1M2 LINE L1 3681 3881 -2967 25 0 0 0 chr12 88652227 88652252 -55134203 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 88653719 88653747 -55132708 + AT_rich Low_complexity Low_complexity 1 28 0 4243 150 21 50 chr12 88653752 88654526 -55131929 + L1P3 LINE L1 6 756 -5705 3841 130 16 6 chr12 88654525 88655148 -55131307 + L1P3 LINE L1 2405 3033 -3428 * 6806 74 18 0 chr12 88655146 88656400 -55130055 + L1PA8 LINE L1 4879 6152 -20 379 266 109 8 chr12 88656412 88656540 -55129915 - MIR SINE MIR -120 142 2 2956 180 57 7 chr12 88656783 88657365 -55129090 + LTR36 LTR ERV1 1 611 0 182 195 0 24 chr12 88657368 88657409 -55129046 - L2 LINE L2 -13 3259 3220 * 191 274 39 0 chr12 88657376 88657427 -55129028 - MIR SINE MIR -14 248 196 198 191 0 0 chr12 88657576 88657623 -55128832 + (TA)n Simple_repeat Simple_repeat 2 48 0 242 209 75 0 chr12 88658666 88658733 -55127722 + L1MB2 LINE L1 6075 6146 -25 2449 80 0 3 chr12 88659037 88659349 -55127106 + AluY SINE Alu 1 311 0 21 36 0 0 chr12 88661104 88661132 -55125323 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 88661320 88661349 -55125106 + AT_rich Low_complexity Low_complexity 1 29 0 929 149 165 0 chr12 88661723 88661911 -55124544 + L1MC/D LINE L1 5526 5744 -589 832 254 147 53 chr12 88661940 88662129 -55124326 + MLT1E2 LTR MaLR 273 443 -183 387 0 0 0 chr12 88662129 88662172 -55124283 + (CA)n Simple_repeat Simple_repeat 2 44 0 832 254 147 53 chr12 88662172 88662301 -55124154 + MLT1E2 LTR MaLR 443 623 -3 344 292 130 7 chr12 88662328 88662482 -55123973 - L1M4 LINE L1 -2647 3499 3327 1381 256 111 13 chr12 88662483 88663080 -55123375 - L1ME1 LINE L1 -10 6156 5502 2349 221 52 0 chr12 88663773 88664258 -55122197 - MST-int LTR MaLR -779 872 363 38 22 0 0 chr12 88664277 88664322 -55122133 + AT_rich Low_complexity Low_complexity 1 45 0 991 160 0 0 chr12 88664322 88664466 -55121989 + FRAM SINE Alu 1 136 -40 469 218 81 69 chr12 88664783 88664957 -55121498 + LTR54 LTR ERV1 1 176 -334 652 207 83 5 chr12 88664960 88665153 -55121302 + LTR54 LTR ERV1 303 510 0 356 303 55 68 chr12 88665202 88665509 -55120946 + HAL1 LINE L1 1175 1477 -1030 4913 188 62 26 chr12 88665513 88666632 -55119823 + L1MC1 LINE L1 7 1165 -5261 774 245 160 18 chr12 88666632 88667011 -55119444 - MER57A LTR ERV1 0 428 10 4421 175 139 5 chr12 88667014 88668119 -55118336 + L1MC1 LINE L1 1169 2421 -4005 2620 222 62 29 chr12 88668125 88670238 -55116217 + L1MC1 LINE L1 3011 6109 -504 724 103 0 9 chr12 88670242 88670358 -55116097 + L1PBa LINE L1 1 115 -6748 347 231 0 13 chr12 88670362 88670440 -55116015 - L1M4 LINE L1 -1175 4971 4895 1179 153 65 0 chr12 88670443 88670659 -55115796 + L1PBa LINE L1 123 352 -6511 1652 150 94 86 chr12 88670661 88671022 -55115433 + THE1B LTR MaLR 1 364 0 5782 119 3 40 chr12 88671022 88671550 -55114905 + THE1B-int LTR MaLR 1 484 -1096 308 131 16 0 chr12 88671550 88671611 -55114844 + L1PA7 LINE L1 6090 6151 -3 5782 119 3 40 chr12 88671611 88671980 -55114475 + THE1B-int LTR MaLR 484 865 -715 2445 124 40 8 chr12 88671980 88672350 -55114105 + MLT2A2 LTR ERVL 1 382 -71 293 218 8 0 chr12 88672352 88672476 -55113979 + CT-rich Low_complexity Low_complexity 2 126 0 39730 89 27 16 chr12 88672517 88677881 -55108574 + HERVL-A2-A1 LTR ERVL 1 5433 -221 2934 138 8 32 chr12 88677881 88678382 -55108073 + LTR22B LTR ERVK 1 489 -3 39730 89 27 16 chr12 88678382 88678607 -55107848 + HERVL-A2-A1 LTR ERVL 5433 5654 0 3214 88 5 9 chr12 88678607 88679051 -55107404 + MLT2A1 LTR ERVL 1 442 -2 4581 134 32 0 chr12 88679051 88679745 -55106710 + THE1B-int LTR MaLR 859 1574 -6 1535 144 84 98 chr12 88679750 88680119 -55106336 + THE1B LTR MaLR 1 364 0 1513 193 42 13 chr12 88680123 88680434 -55106021 + L1PBa LINE L1 354 673 -6190 632 85 0 0 chr12 88680434 88680516 -55105939 - THE1A LTR MaLR -273 82 1 5285 123 24 18 chr12 88680518 88681410 -55105045 + L1PB1 LINE L1 5254 6150 -1 685 228 76 0 chr12 88681439 88681597 -55104858 + FRAM SINE Alu 1 169 -7 508 127 0 0 chr12 88681597 88681676 -55104779 + L1MC1 LINE L1 6103 6181 -443 2381 116 14 6 chr12 88681696 88682058 -55104397 - L1PB1 LINE L1 -4 6147 5783 285 109 0 0 chr12 88682068 88682114 -55104341 + (CA)n Simple_repeat Simple_repeat 2 47 0 572 174 7 101 chr12 88682133 88682214 -55104241 - MER46A DNA MER2_type -108 128 64 2104 100 20 7 chr12 88682214 88682513 -55103942 + AluY SINE Alu 1 303 -8 572 174 7 101 chr12 88682513 88682569 -55103886 - MER46A DNA MER2_type -172 64 4 27058 123 21 15 chr12 88682674 88686800 -55099655 - L1PA7 LINE L1 -7 6462 2272 6282 25 0 0 chr12 88686800 88687526 -55098929 - L1PA3 LINE L1 0 6155 5430 27058 123 21 15 chr12 88687526 88689108 -55097347 - L1PA7 LINE L1 -4197 2272 700 1850 192 31 35 chr12 88689105 88689527 -55096928 + L1MC1 LINE L1 6176 6595 -18 * 233 306 0 0 chr12 88690111 88690183 -55096272 + GA-rich Low_complexity Low_complexity 2 73 0 706 116 0 0 chr12 88690405 88690500 -55095955 - L1PA7 LINE L1 -6060 401 307 1512 97 5 5 chr12 88691166 88691373 -55095082 - HERVL LTR ERVL -3088 2566 2360 29 47 0 0 chr12 88692638 88692681 -55093774 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 88693045 88693067 -55093388 + AT_rich Low_complexity Low_complexity 1 22 0 37 0 0 0 chr12 88693398 88693435 -55093020 + AT_rich Low_complexity Low_complexity 1 37 0 1197 203 36 8 chr12 88693518 88693812 -55092643 + MER61C LTR ERV1 1 404 -30 23 33 0 0 chr12 88694033 88694063 -55092392 + AT_rich Low_complexity Low_complexity 1 30 0 339 297 10 0 chr12 88694066 88694167 -55092288 + MIR SINE MIR 149 250 -12 600 286 89 29 chr12 88695544 88695791 -55090664 + MIR SINE MIR 2 259 -3 305 303 126 30 chr12 88695968 88696166 -55090289 - MIR SINE MIR -34 228 12 636 300 138 21 chr12 88696264 88696678 -55089777 - LTR33A LTR ERVL -39 484 45 365 314 15 0 chr12 88697054 88697191 -55089264 + MER113 DNA MER1_type? 349 487 -34 1570 262 84 6 chr12 88698810 88699443 -55087012 + L1ME1 LINE L1 2322 3003 -3143 3055 227 50 43 chr12 88699530 88700645 -55085810 + L1ME1 LINE L1 4981 6136 -30 36 77 0 0 chr12 88701428 88701506 -55084949 + AT_rich Low_complexity Low_complexity 1 78 0 366 336 48 0 chr12 88702030 88702155 -55084300 + MIR SINE MIR 7 137 -125 187 296 156 37 chr12 88702664 88702799 -55083656 - MIR SINE MIR -59 203 53 427 312 64 0 chr12 88703105 88703246 -55083209 + Charlie1a DNA MER1_type 7 156 -1299 288 253 71 50 chr12 88703252 88703330 -55083125 - MLT1F LTR MaLR -27 522 440 2344 187 38 6 chr12 88703330 88703801 -55082654 + MER66B LTR ERV1 1 486 0 288 253 71 50 chr12 88703801 88703821 -55082634 - MLT1F LTR MaLR -109 440 422 2735 169 38 19 chr12 88704111 88704685 -55081770 - LTR60 LTR ERV1 -1 585 1 905 309 140 0 chr12 88704692 88705042 -55081413 - MLT1F LTR MaLR -132 410 12 293 248 48 57 chr12 88705019 88705124 -55081331 + Charlie1a DNA MER1_type 131 234 -1221 * 295 367 83 0 chr12 88705228 88705408 -55081047 - L1ME LINE L1 -483 5756 5562 348 317 54 21 chr12 88705691 88705931 -55080524 - L1ME LINE L1 -987 5228 4981 370 326 65 25 chr12 88705963 88706208 -55080247 - L1MC4a LINE L1 -1759 6049 5795 444 252 189 6 chr12 88706490 88706808 -55079647 - L1ME LINE L1 -2931 3284 2909 548 234 150 77 chr12 88706907 88707131 -55079324 - MER57A LTR ERV1 -9 394 181 2144 87 6 32 chr12 88707131 88707443 -55079012 - AluY SINE Alu -7 304 1 548 234 150 77 chr12 88707443 88707525 -55078930 - MER57A LTR ERV1 -222 181 106 362 303 62 38 chr12 88707640 88708270 -55078185 - L1MEc LINE L1 -3437 2778 2169 292 260 13 0 chr12 88708822 88708899 -55077556 + MIR3 SINE MIR 82 159 -49 22 0 0 0 chr12 88709516 88709538 -55076917 + AT_rich Low_complexity Low_complexity 1 22 0 218 103 0 26 chr12 88709846 88709885 -55076570 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 205 167 42 21 chr12 88709887 88709935 -55076520 + GA-rich Low_complexity Low_complexity 4 52 0 34 55 0 0 chr12 88710650 88710705 -55075750 + AT_rich Low_complexity Low_complexity 1 55 0 34 55 0 0 chr12 88710857 88710912 -55075543 + AT_rich Low_complexity Low_complexity 1 55 0 405 229 97 57 chr12 88712277 88712452 -55074003 + MIR SINE MIR 68 249 -13 267 226 179 12 chr12 88712806 88712890 -55073565 + MER5A DNA MER1_type 9 106 -83 468 321 107 36 chr12 88712928 88713321 -55073134 + L1M3b LINE L1 1261 1681 -5815 2470 247 78 39 chr12 88713718 88715389 -55071066 + L1M3b LINE L1 2102 3747 -3818 * 3180 157 50 19 chr12 88715386 88716599 -55069856 + L1MA4 LINE L1 4928 6292 -8 7266 36 80 0 chr12 88717540 88718498 -55067957 - L1PA4 LINE L1 -5 6150 5174 497 321 74 43 chr12 88718502 88718947 -55067508 + L2 LINE L2 2157 2615 -699 321 301 10 10 chr12 88719082 88719185 -55067270 + MIR SINE MIR 158 260 -2 21 0 0 0 chr12 88719713 88719734 -55066721 + AT_rich Low_complexity Low_complexity 1 21 0 370 293 18 33 chr12 88721740 88721921 -55064534 + MLT1J LTR MaLR 43 262 -249 1932 49 15 26 chr12 88722062 88722327 -55064128 + L1PA4 LINE L1 5894 6155 0 1560 154 42 11 chr12 88722658 88722943 -55063512 - MER46B DNA MER2_type 0 236 68 886 162 27 0 chr12 88723061 88723253 -55063202 - L1M2 LINE L1 -680 5488 5280 40 49 0 0 chr12 88723549 88723610 -55062845 + AT_rich Low_complexity Low_complexity 1 61 0 883 250 5 0 chr12 88724636 88724824 -55061631 + MER5A DNA MER1_type 1 189 0 28 29 0 0 chr12 88725533 88725568 -55060887 + AT_rich Low_complexity Low_complexity 1 35 0 1394 175 21 91 chr12 88725875 88726206 -55060249 + AluJo SINE Alu 1 308 -4 203 245 142 28 chr12 88726705 88726811 -55059644 + L2 LINE L2 3149 3266 -6 682 45 0 0 chr12 88727166 88727254 -55059201 - L1PA5 LINE L1 0 6154 6067 265 29 0 0 chr12 88727254 88727288 -55059167 + L1P LINE L1 4775 4808 -1338 30 45 0 0 chr12 88727822 88727866 -55058589 + AT_rich Low_complexity Low_complexity 1 44 0 629 207 50 22 chr12 88728187 88728366 -55058089 - MER45R DNA AcHobo -7 1574 1391 201 219 31 0 chr12 88728535 88728599 -55057856 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 24 0 0 0 chr12 88730062 88730086 -55056369 + AT_rich Low_complexity Low_complexity 1 24 0 213 369 121 6 chr12 88730451 88730608 -55055847 - L3 LINE CR1 -41 1536 1362 290 366 8 16 chr12 88731943 88732066 -55054389 + L2 LINE L2 3192 3313 0 251 191 16 16 chr12 88732160 88732223 -55054232 + (TA)n Simple_repeat Simple_repeat 2 64 0 200 397 0 0 chr12 88732248 88732316 -55054139 + L2 LINE L2 1121 1188 -2126 1098 311 57 23 chr12 88732400 88732870 -55053585 + L2 LINE L2 2827 3312 -1 2400 58 0 13 chr12 88733578 88733887 -55052568 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 88733894 88733915 -55052540 + AT_rich Low_complexity Low_complexity 1 21 0 241 324 248 0 chr12 88733960 88734105 -55052350 + MER5A DNA MER1_type 9 189 0 23 0 0 0 chr12 88734772 88734795 -55051660 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 88735476 88735498 -55050957 + AT_rich Low_complexity Low_complexity 1 22 0 2267 54 0 20 chr12 88736257 88736555 -55049900 + AluY SINE Alu 1 292 -19 26 30 0 0 chr12 88736896 88736929 -55049526 + AT_rich Low_complexity Low_complexity 1 33 0 297 253 22 11 chr12 88736929 88737020 -55049435 - MIR SINE MIR -42 220 129 286 320 107 0 chr12 88737755 88737858 -55048597 + L2 LINE L2 3137 3250 -22 2414 193 14 0 chr12 88738778 88739223 -55047232 + MLT1C LTR MaLR 1 451 -16 253 395 33 40 chr12 88740332 88740484 -55045971 - MIR3 SINE MIR -16 192 42 22 56 0 0 chr12 88740833 88740869 -55045586 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 88741162 88741183 -55045272 + AT_rich Low_complexity Low_complexity 1 21 0 664 287 162 22 chr12 88741846 88742263 -55044192 - L1ME3A LINE L1 -26 6144 5669 214 83 50 50 chr12 88742263 88742323 -55044132 + (TA)n Simple_repeat Simple_repeat 1 60 0 350 270 0 36 chr12 88742412 88742523 -55043932 - L1ME3A LINE L1 -583 5579 5473 1719 229 36 30 chr12 88743052 88743554 -55042901 + MLT1D LTR MaLR 1 505 0 670 211 38 22 chr12 88743567 88743752 -55042703 + MLT1D-int LTR MaLR 14 201 -1170 542 331 38 32 chr12 88743926 88744273 -55042182 + L2 LINE L2 2146 2494 -820 466 335 104 0 chr12 88744302 88744532 -55041923 - MIR SINE MIR -8 254 1 183 360 11 11 chr12 88744708 88744797 -55041658 + L2 LINE L2 2690 2778 -536 617 223 97 23 chr12 88744958 88745133 -55041322 + L2 LINE L2 3122 3309 -4 267 103 0 0 chr12 88745352 88745391 -55041064 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 535 329 170 35 chr12 88745793 88746428 -55040027 + L2 LINE L2 1264 1984 -1330 626 247 70 37 chr12 88746514 88747163 -55039292 - L1ME3A LINE L1 -33 6137 5452 22 35 0 0 chr12 88747279 88747308 -55039147 + AT_rich Low_complexity Low_complexity 1 29 0 1936 127 22 29 chr12 88748674 88748988 -55037467 + AluSx SINE Alu 1 312 0 1260 190 30 22 chr12 88749004 88749273 -55037182 - MLT1B LTR MaLR -119 271 1 766 154 0 8 chr12 88749397 88749520 -55036935 - MER21B LTR ERV1 -504 359 238 778 191 0 0 chr12 88749871 88750007 -55036448 - FRAM SINE Alu -9 167 32 195 312 128 9 chr12 88750113 88750222 -55036233 + L2 LINE L2 2412 2533 -781 207 204 0 0 chr12 88750272 88750316 -55036139 + (TA)n Simple_repeat Simple_repeat 1 44 0 2477 200 20 79 chr12 88750934 88751543 -55034912 - MER21B LTR ERV1 -53 810 238 383 286 92 34 chr12 88751794 88752054 -55034401 - MLT1G1 LTR MaLR -4 570 315 297 338 85 44 chr12 88752264 88752581 -55033874 - L2 LINE L2 -672 2642 2313 2157 114 3 0 chr12 88753392 88753689 -55032766 - AluSg SINE Alu -12 298 1 22 0 0 0 chr12 88754191 88754213 -55032242 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 88754317 88754338 -55032117 + AT_rich Low_complexity Low_complexity 1 21 0 234 353 111 21 chr12 88754473 88754708 -55031747 - L2 LINE L2 -463 2851 2596 405 150 0 0 chr12 88754748 88754808 -55031647 + U6 snRNA snRNA 5 64 -43 2957 133 24 10 chr12 88755776 88756135 -55030320 - L1PB3 LINE L1 -7 6147 5778 243 0 0 0 chr12 88756135 88756162 -55030293 + (TG)n Simple_repeat Simple_repeat 2 28 0 2957 133 24 10 chr12 88756162 88756298 -55030157 - L1PB3 LINE L1 -376 5778 5645 2062 241 53 85 chr12 88756298 88757336 -55029119 - LTR27 LTR ERV1 -7 1696 2 4500 188 23 9 chr12 88757336 88758681 -55027774 - L1P5 LINE L1 -500 6370 5011 3725 251 40 28 chr12 88758677 88760590 -55025865 - L1P5 LINE L1 -5223 1640 420 * 1875 120 110 3 chr12 88760590 88760899 -55025556 - MER61A LTR ERV1 -1 342 1 6160 123 50 13 chr12 88760899 88761890 -55024565 - MER61A-int LTR ERV1 0 5217 4190 34 42 0 0 chr12 88761890 88761938 -55024517 + AT_rich Low_complexity Low_complexity 1 48 0 17372 44 6 1 chr12 88761948 88764892 -55021563 - L1PA5 LINE L1 -5 6149 3196 631 168 8 8 chr12 88764896 88765027 -55021428 + Charlie5 DNA MER1_type 2455 2585 -27 202 114 68 0 chr12 88765477 88765521 -55020934 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 13462 91 25 13 chr12 88765544 88766413 -55020042 - MER61A-int LTR ERV1 -1013 4204 3347 2353 89 0 7 chr12 88766413 88766715 -55019740 + AluY SINE Alu 1 300 -11 13462 91 25 13 chr12 88766715 88767757 -55018698 - MER61A-int LTR ERV1 -1870 3347 2266 206 62 31 0 chr12 88767757 88767789 -55018666 + (TTA)n Simple_repeat Simple_repeat 2 34 0 13462 91 25 13 chr12 88767789 88767829 -55018626 - MER61A-int LTR ERV1 -2951 2266 2228 243 0 0 0 chr12 88768415 88768442 -55018013 + (TTG)n Simple_repeat Simple_repeat 1 27 0 234 329 105 32 chr12 88769632 88769851 -55016604 - MIR SINE MIR -16 246 12 269 218 40 109 chr12 88770920 88771021 -55015434 + MLT1L LTR MaLR 179 272 -343 1315 245 50 12 chr12 88771862 88772205 -55014250 + MLT1A1 LTR MaLR 10 365 0 2470 94 0 0 chr12 88773817 88774125 -55012330 + AluSg SINE Alu 1 308 -2 1618 264 77 33 chr12 88775073 88775591 -55010864 + MLT1H LTR MaLR 3 543 -6 366 115 0 0 chr12 88776514 88776575 -55009880 + (TG)n Simple_repeat Simple_repeat 1 61 0 794 275 35 9 chr12 88776679 88776908 -55009547 + Charlie8 DNA MER1_type 20 254 -2163 535 321 111 39 chr12 88777162 88777551 -55008904 - MLT1K LTR MaLR -16 572 156 208 293 179 19 chr12 88777922 88778028 -55008427 + MIR SINE MIR 20 142 -66 289 189 36 45 chr12 88778311 88778422 -55008033 - L1ME3A LINE L1 -219 5951 5842 370 313 150 22 chr12 88778430 88778914 -55007541 - L1MEc LINE L1 -3678 2451 1950 270 278 111 44 chr12 88779075 88779172 -55007283 - L1MEc LINE L1 -4576 1734 1645 3527 130 4 9 chr12 88779172 88779701 -55006754 - MER1A DNA MER1_type -1 526 1 270 278 111 44 chr12 88779701 88780124 -55006331 - L1MEc LINE L1 -4665 1645 1179 444 297 93 63 chr12 88780152 88780613 -55005842 - L1MEc LINE L1 -5047 1072 598 183 222 37 0 chr12 88781060 88781141 -55005314 + CT-rich Low_complexity Low_complexity 1 84 0 317 304 84 87 chr12 88781696 88782051 -55004404 - L1MEc LINE L1 -5717 402 49 1728 84 0 0 chr12 88782270 88782483 -55003972 + AluSg/x SINE Alu 77 289 -23 296 268 53 103 chr12 88782992 88783358 -55003097 - MLT1H LTR MaLR -26 424 79 21 36 0 0 chr12 88783793 88783821 -55002634 + AT_rich Low_complexity Low_complexity 1 28 0 2174 208 16 10 chr12 88783881 88784377 -55002078 - L1 LINE L1 -889 5959 5461 * 5794 215 23 21 chr12 88784370 88784431 -55002024 - L1 LINE L1 -2390 4458 4399 213 39 0 0 chr12 88784431 88784457 -55001998 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5794 215 23 21 chr12 88784457 88785911 -55000544 - L1 LINE L1 -2449 4399 2950 266 0 29 0 chr12 88785911 88785945 -55000510 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2137 105 0 0 chr12 88785948 88786225 -55000230 - AluSg SINE Alu -33 277 1 5794 215 23 21 chr12 88786225 88787126 -54999329 - L1 LINE L1 -3899 2949 2030 2231 169 9 61 chr12 88787127 88787399 -54999056 - MSTB LTR MaLR -4 422 137 2534 100 14 3 chr12 88787399 88787759 -54998696 + THE1B LTR MaLR 1 364 0 9535 133 31 40 chr12 88787759 88789353 -54997102 + THE1B-int LTR MaLR 1 1580 0 2312 141 6 3 chr12 88789353 88789716 -54996739 + THE1B LTR MaLR 1 364 0 2231 169 9 61 chr12 88789716 88789886 -54996569 - MSTB LTR MaLR -286 140 1 8128 201 133 4 chr12 88789890 88790317 -54996138 - L1 LINE L1 -4817 2032 1661 350 91 18 0 chr12 88790317 88790372 -54996083 + (TA)n Simple_repeat Simple_repeat 2 57 0 8128 201 133 4 chr12 88790372 88791744 -54994711 - L1 LINE L1 -5188 1661 1 1118 188 60 4 chr12 88791754 88792004 -54994451 - L1MA8 LINE L1 -55 6236 5973 988 132 6 29 chr12 88792005 88792179 -54994276 + L1MA8 LINE L1 5808 5977 -314 25 0 0 0 chr12 88792484 88792509 -54993946 + AT_rich Low_complexity Low_complexity 1 25 0 192 371 112 0 chr12 88792828 88792944 -54993511 + L2 LINE L2 3121 3249 -23 2038 136 0 10 chr12 88793788 88794090 -54992365 - AluSx SINE Alu -13 299 1 232 167 0 0 chr12 88794284 88794320 -54992135 + U2 snRNA snRNA 1 36 -152 249 330 75 0 chr12 88794414 88794508 -54991947 - MIR3 SINE MIR -5 203 103 2234 110 11 38 chr12 88794560 88794925 -54991530 - THE1A LTR MaLR 0 355 1 279 247 68 0 chr12 88795672 88795745 -54990710 - MIR SINE MIR -120 142 65 3279 39 2 10 chr12 88795898 88796313 -54990142 + L1PA5 LINE L1 5743 6154 0 357 303 11 85 chr12 88796402 88796590 -54989865 - MIR SINE MIR -5 257 84 30 45 0 0 chr12 88796855 88796899 -54989556 + AT_rich Low_complexity Low_complexity 1 44 0 186 103 0 0 chr12 88797545 88797574 -54988881 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 268 66 118 chr12 88798245 88798473 -54987982 + L2 LINE L2 3098 3313 0 22 56 0 0 chr12 88800362 88800398 -54986057 + AT_rich Low_complexity Low_complexity 1 36 0 257 122 0 0 chr12 88800425 88800466 -54985989 - L1PA15 LINE L1 -7 6158 6118 197 337 126 15 chr12 88802064 88802263 -54984192 + L2 LINE L2 2382 2602 -712 434 332 62 19 chr12 88802661 88802869 -54983586 + MIR SINE MIR 11 227 -35 22 56 0 0 chr12 88802910 88802946 -54983509 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 88803117 88803143 -54983312 + AT_rich Low_complexity Low_complexity 1 26 0 29487 49 3 2 chr12 88803870 88807555 -54978900 + L1P LINE L1 7 3698 -2448 26 0 0 0 chr12 88807560 88807586 -54978869 + AT_rich Low_complexity Low_complexity 1 26 0 258 289 36 48 chr12 88807902 88807985 -54978470 - L2 LINE L2 0 3272 3191 2158 99 10 7 chr12 88808733 88809025 -54977430 - AluSq SINE Alu -18 295 3 1005 320 63 22 chr12 88809174 88809934 -54976521 - ERVL LTR ERVL -3178 2586 1751 744 97 0 18 chr12 88809991 88810105 -54976350 - L1PA13 LINE L1 -6 6157 6046 240 265 55 10 chr12 88810596 88810744 -54975711 + L1ME LINE L1 5524 5681 -440 220 274 245 10 chr12 88810747 88810849 -54975606 + MIR SINE MIR 58 183 -79 24 67 0 0 chr12 88810871 88810916 -54975539 + AT_rich Low_complexity Low_complexity 1 45 0 1522 171 4 4 chr12 88811701 88811958 -54974497 + AluJo SINE Alu 12 268 -44 261 0 0 0 chr12 88811961 88811990 -54974465 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 34 0 0 0 chr12 88811996 88812030 -54974425 + AT_rich Low_complexity Low_complexity 1 34 0 1972 125 0 26 chr12 88812252 88812555 -54973900 + AluSq SINE Alu 1 295 -18 258 289 36 48 chr12 88813301 88813384 -54973071 + L2 LINE L2 3191 3272 0 26 0 0 0 chr12 88813700 88813726 -54972729 + AT_rich Low_complexity Low_complexity 1 26 0 29196 52 4 2 chr12 88813731 88817416 -54969039 - L1P LINE L1 -2448 3698 7 26 0 0 0 chr12 88818142 88818168 -54968287 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr12 88818339 88818375 -54968080 + AT_rich Low_complexity Low_complexity 1 36 0 302 301 56 35 chr12 88818416 88818559 -54967896 - MIR SINE MIR -35 227 82 1198 248 109 65 chr12 88819413 88820224 -54966231 + L1ME3A LINE L1 5207 6044 -126 301 92 66 0 chr12 88820312 88820388 -54966067 + (TA)n Simple_repeat Simple_repeat 1 81 0 1466 199 18 18 chr12 88820404 88820686 -54965769 - AluJo SINE Alu -30 282 1 1666 168 3 81 chr12 88820747 88821104 -54965351 + MLT1B LTR MaLR 53 381 -9 681 239 41 82 chr12 88821169 88821437 -54965018 - MER46C DNA MER2_type -81 257 1 287 339 45 9 chr12 88822784 88822896 -54963559 - MIR SINE MIR -115 147 32 903 226 26 6 chr12 88823209 88823489 -54962966 + MER2 DNA MER2_type 2 335 -10 237 317 59 14 chr12 88823637 88823724 -54962731 - MIR SINE MIR -61 147 63 314 267 0 38 chr12 88824113 88824218 -54962237 + CT-rich Low_complexity Low_complexity 3 103 0 317 24 24 0 chr12 88824364 88824406 -54962049 + (TG)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr12 88825067 88825091 -54961364 + AT_rich Low_complexity Low_complexity 1 24 0 201 219 31 0 chr12 88826554 88826618 -54959837 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 613 207 50 22 chr12 88826787 88826966 -54959489 + MER45R DNA AcHobo 1391 1574 -7 30 45 0 0 chr12 88827287 88827331 -54959124 + AT_rich Low_complexity Low_complexity 1 44 0 312 26 0 0 chr12 88827867 88827905 -54958550 - L1P LINE L1 -1338 4808 4771 678 45 0 0 chr12 88827905 88827989 -54958466 + L1PA5 LINE L1 6067 6154 0 205 245 142 28 chr12 88828345 88828451 -54958004 - L2 LINE L2 -6 3266 3149 1250 196 18 90 chr12 88828950 88829282 -54957173 - AluJo SINE Alu -4 308 1 11071 136 16 13 chr12 88830338 88831332 -54955123 + MER61-int LTR ERV1 2336 3337 -1880 2353 89 0 7 chr12 88831332 88831634 -54954821 - AluY SINE Alu -11 300 1 11071 136 16 13 chr12 88831634 88832504 -54953951 + MER61-int LTR ERV1 3337 4204 -1013 202 114 68 0 chr12 88832527 88832571 -54953884 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 605 183 8 8 chr12 88833021 88833152 -54953303 - Charlie5 DNA MER1_type -27 2585 2455 4093 74 5 0 chr12 88833167 88833735 -54952720 + L1P LINE L1 3206 3776 -2370 249 219 38 9 chr12 88835627 88835732 -54950723 + (TA)n Simple_repeat Simple_repeat 2 109 0 843 245 158 42 chr12 88835742 88836216 -54950239 - L1MC4 LINE L1 -145 7897 7369 1318 162 9 0 chr12 88836218 88836434 -54950021 - AluSq SINE Alu -6 307 90 337 217 196 0 chr12 88836441 88836533 -54949922 - L1MC4a LINE L1 -542 7266 7157 23 0 0 0 chr12 88836964 88836987 -54949468 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr12 88837870 88837917 -54948538 + GC_rich Low_complexity Low_complexity 1 47 0 231 146 0 0 chr12 88838053 88838094 -54948361 + (G)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 88838185 88838207 -54948248 + (G)n Simple_repeat Simple_repeat 1 22 0 261 337 43 48 chr12 88840171 88840358 -54946097 + MIR SINE MIR 2 187 -75 232 290 30 0 chr12 88840360 88840460 -54945995 + (TA)n Simple_repeat Simple_repeat 2 104 0 6916 169 5 9 chr12 88840938 88842208 -54944247 - L1P LINE L1 -3867 2279 1015 6152 66 13 1 chr12 88842208 88843462 -54942993 + L1PA3 LINE L1 4751 6012 -143 1947 111 33 0 chr12 88844017 88844318 -54942137 - AluSg SINE Alu 0 310 1 463 315 176 28 chr12 88844711 88844932 -54941523 + L2 LINE L2 2530 2717 -597 1032 193 13 9 chr12 88844932 88845160 -54941295 + L1MB8 LINE L1 5944 6172 -6 463 315 176 28 chr12 88845160 88845325 -54941130 + L2 LINE L2 2717 2973 -341 372 159 0 68 chr12 88845346 88845395 -54941060 - L1PB4 LINE L1 -2 6154 6112 1791 191 77 20 chr12 88845395 88845798 -54940657 - MSTB LTR MaLR 0 426 1 372 159 0 68 chr12 88845798 88845836 -54940619 - L1PB4 LINE L1 -44 6112 6073 4020 99 8 5 chr12 88845964 88846562 -54939893 + L1PA7 LINE L1 5551 6150 -4 304 295 68 39 chr12 88847347 88847581 -54938874 - HAL1b LINE L1 -440 908 668 382 328 56 62 chr12 88847683 88848006 -54938449 - HAL1b LINE L1 -822 526 206 491 338 47 31 chr12 88848072 88848392 -54938063 + LTR16C LTR ERVL 85 409 -82 1682 80 5 0 chr12 88848997 88849209 -54937246 + AluSg/x SINE Alu 77 289 -23 285 264 48 113 chr12 88849720 88850083 -54936372 - MLT1H LTR MaLR -33 376 79 1749 302 36 40 chr12 88851372 88852600 -54933855 - L1PBa LINE L1 -5219 1644 422 227 106 43 21 chr12 88852602 88852649 -54933806 - MER61A LTR ERV1 -1 342 295 311 263 72 0 chr12 88852837 88852989 -54933466 - HSMAR2 DNA Mariner -867 435 273 2481 143 14 5 chr12 88852995 88853430 -54933025 - HSMAR2 DNA Mariner -855 447 9 384 65 0 0 chr12 88853927 88853973 -54932482 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr12 88854901 88854929 -54931526 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 88855064 88855086 -54931369 + AT_rich Low_complexity Low_complexity 1 22 0 937 262 41 0 chr12 88855106 88855396 -54931059 + L1MD3 LINE L1 7490 7791 -204 332 346 84 53 chr12 88855774 88856362 -54930093 - L1MC4a LINE L1 -362 5800 5271 244 271 0 0 chr12 88856367 88856426 -54930029 - AluJo SINE Alu -11 291 233 * 368 215 0 96 chr12 88856423 88856558 -54929897 - AluJo SINE Alu -117 185 64 980 136 84 0 chr12 88856824 88856979 -54929476 - AluJb SINE Alu -12 300 133 262 297 26 26 chr12 88858452 88858607 -54927848 + L1PB4 LINE L1 5934 6088 -68 289 297 32 16 chr12 88859738 88859898 -54926557 + MLT1J LTR MaLR 59 257 -254 861 55 34 1 chr12 88860029 88860163 -54926292 + L1PA4 LINE L1 5878 6014 -117 480 139 0 0 chr12 88860169 88860248 -54926207 + (C)n Simple_repeat Simple_repeat 1 79 0 324 270 11 60 chr12 88860374 88860559 -54925896 + C-rich Low_complexity Low_complexity 3 178 0 481 153 12 0 chr12 88860720 88860805 -54925650 - Tigger4(Zombi) DNA MER2_type -2645 86 1 983 169 24 0 chr12 88860857 88861064 -54925391 - L1PA14 LINE L1 -1015 5131 4920 5610 110 26 2 chr12 88861064 88862087 -54924368 + L1PA14 LINE L1 5111 6157 -4 545 287 122 0 chr12 88862221 88862385 -54924070 + MER5A DNA MER1_type 1 184 -5 2756 198 59 5 chr12 88862566 88863177 -54923278 + MER73 LTR ERVL 1 644 0 181 194 28 0 chr12 88863783 88863819 -54922636 + MIR SINE MIR 76 112 -150 325 141 51 0 chr12 88863986 88864064 -54922391 - L1MA9 LINE L1 -6 6306 6225 252 63 0 95 chr12 88864077 88864172 -54922283 + (TA)n Simple_repeat Simple_repeat 1 86 0 237 105 26 0 chr12 88864287 88864325 -54922130 - Alu SINE Alu -39 94 56 264 59 0 0 chr12 88864355 88864389 -54922066 + (T)n Simple_repeat Simple_repeat 1 34 0 4356 157 17 46 chr12 88864389 88865307 -54921148 + Tigger3b DNA MER2_type 340 1231 0 1254 244 44 9 chr12 88865777 88866441 -54920014 + L1MB7 LINE L1 4909 5594 -590 767 177 23 137 chr12 88866433 88866802 -54919653 + L1MB7 LINE L1 5802 6121 -63 * 558 93 139 0 chr12 88866802 88866888 -54919567 - AluSg/x SINE Alu -18 291 194 8987 58 13 2 chr12 88868370 88869620 -54916835 + L1P LINE L1 3452 4715 -1431 25 0 0 0 chr12 88869948 88869973 -54916482 + AT_rich Low_complexity Low_complexity 1 25 0 1581 167 71 12 chr12 88871027 88871435 -54915020 - HSMAR2 DNA Mariner -1 1301 870 311 374 6 12 chr12 88871674 88871840 -54914615 + GA-rich Low_complexity Low_complexity 2 166 0 * 436 279 0 63 chr12 88871737 88871927 -54914528 + G-rich Low_complexity Low_complexity 3 180 0 208 345 83 0 chr12 88872808 88872892 -54913563 - MIR SINE MIR -72 136 46 1544 216 53 129 chr12 88873326 88874123 -54912332 + LTR1B LTR ERV1 2 737 -89 2417 62 0 13 chr12 88874892 88875201 -54911254 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 88875208 88875229 -54911226 + AT_rich Low_complexity Low_complexity 1 21 0 253 324 248 0 chr12 88875274 88875419 -54911036 + MER5A DNA MER1_type 9 189 0 321 89 0 0 chr12 88876107 88876152 -54910303 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 358 24 0 0 chr12 88876152 88876193 -54910262 - L1PA6 LINE L1 -18 6136 6096 25 51 0 0 chr12 88877040 88877079 -54909376 + AT_rich Low_complexity Low_complexity 1 39 0 421 270 190 19 chr12 88877906 88878117 -54908338 - LTR50 LTR ERVL -541 254 8 672 197 28 17 chr12 88878703 88878881 -54907574 - LTR55 LTR ERV -368 180 1 276 330 99 11 chr12 88879415 88879606 -54906849 + MIR SINE MIR 19 226 -36 309 288 93 34 chr12 88880243 88880501 -54905954 + MLT1G1 LTR MaLR 315 543 -6 757 277 5 0 chr12 88881900 88882088 -54904367 + MER5A DNA MER1_type 1 189 0 618 286 79 38 chr12 88882872 88883162 -54903293 + L2 LINE L2 3011 3312 -1 2118 110 11 0 chr12 88884011 88884348 -54902107 - AluSp SINE Alu 0 340 1 23 0 0 0 chr12 88885945 88885968 -54900487 + AT_rich Low_complexity Low_complexity 1 23 0 549 241 22 39 chr12 88886692 88886896 -54899559 - MLT1H LTR MaLR -304 245 2 277 264 75 19 chr12 88886940 88887046 -54899409 + MLT1J2 LTR MaLR 92 203 -247 1353 24 0 0 chr12 88887785 88887954 -54898501 - L1HS LINE L1 -327 5828 5660 685 35 0 17 chr12 88887961 88888066 -54898389 + L1P1 LINE L1 5587 5684 -482 354 315 31 0 chr12 88888147 88888274 -54898181 + MLT1I LTR MaLR 25 155 -254 22 35 0 0 chr12 88988954 88988983 -54797472 + AT_rich Low_complexity Low_complexity 1 29 0 2036 130 0 0 chr12 88989483 88989799 -54796656 - AluYb8 SINE Alu 0 318 3 1185 320 45 9 chr12 88989964 88990405 -54796050 - HERV16 LTR ERVL -4539 457 1 612 328 71 35 chr12 88990471 88990782 -54795673 - LTR16A LTR ERVL -78 379 58 383 296 43 31 chr12 88990833 88990995 -54795460 - L2 LINE L2 -900 2414 2251 21 0 0 0 chr12 88990995 88991016 -54795439 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr12 88991525 88991570 -54794885 + AT_rich Low_complexity Low_complexity 1 45 0 211 245 298 11 chr12 88991575 88991669 -54794786 + L2 LINE L2 3140 3260 -12 3128 27 0 0 chr12 88991807 88992177 -54794278 + L1PA3 LINE L1 5786 6155 0 238 306 12 35 chr12 88994124 88994209 -54792246 - L2 LINE L2 -919 2395 2313 196 336 35 35 chr12 88994384 88994497 -54791958 - L2 LINE L2 -1071 2243 2131 298 218 13 26 chr12 88994694 88994772 -54791683 - LTR33 LTR ERVL -2 519 443 443 314 0 8 chr12 88995003 88995121 -54791334 - LTR33 LTR ERVL -361 160 44 189 121 0 0 chr12 88995913 88995946 -54790509 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 901 153 16 33 chr12 88996596 88996738 -54789717 + L1MA9 LINE L1 6133 6273 -39 1809 149 83 9 chr12 88996738 88997087 -54789368 - THE1C LTR MaLR 0 375 1 901 153 16 33 chr12 88997087 88997127 -54789328 + L1MA9 LINE L1 6273 6312 0 245 240 10 104 chr12 88997492 88997588 -54788867 - L2 LINE L2 -5 3267 3181 371 209 59 78 chr12 88998523 88998676 -54787779 + L1ME LINE L1 17 166 -5904 452 261 53 25 chr12 88999127 88999372 -54787083 + L1ME LINE L1 526 777 -5293 670 294 37 22 chr12 88999479 88999748 -54786707 - MER77 LTR ERV1 -29 576 304 735 262 39 49 chr12 88999809 89000095 -54786360 + L1ME2 LINE L1 5815 6097 -67 354 23 0 0 chr12 89000898 89000941 -54785514 + (TA)n Simple_repeat Simple_repeat 1 43 0 30 83 0 0 chr12 89000986 89001058 -54785397 + AT_rich Low_complexity Low_complexity 1 72 0 731 286 133 33 chr12 89002167 89002499 -54783956 - L2 LINE L2 -1753 1561 1197 3747 218 59 3 chr12 89003096 89004137 -54782318 - L1MB3 LINE L1 -3 6180 5095 2871 13 0 0 chr12 89004522 89004864 -54781591 - AluYb8 SINE Alu 0 342 1 336 62 62 0 chr12 89006239 89006287 -54780168 - L1PA4 LINE L1 -76 6079 6029 476 95 0 0 chr12 89006287 89006352 -54780103 + L1PA2 LINE L1 6079 6152 -3 189 0 0 0 chr12 89006700 89006721 -54779734 + (TG)n Simple_repeat Simple_repeat 2 22 0 263 212 0 0 chr12 89007159 89007225 -54779230 - L1MC4 LINE L1 -1339 6703 6638 486 324 65 0 chr12 89007229 89007399 -54779056 - MIR SINE MIR 0 262 82 1054 292 111 28 chr12 89008226 89008685 -54777770 - L2 LINE L2 -4 3309 2813 2295 84 51 25 chr12 89008973 89009328 -54777127 - THE1B LTR MaLR 0 364 1 376 321 36 7 chr12 89009365 89009502 -54776953 - L2 LINE L2 -360 2954 2814 219 170 0 0 chr12 89010866 89010913 -54775542 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 206 133 0 44 chr12 89011099 89011144 -54775311 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr12 89011479 89011506 -54774949 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chr12 89013213 89013255 -54773200 + AT_rich Low_complexity Low_complexity 1 42 0 193 149 43 21 chr12 89013904 89013951 -54772504 + L2 LINE L2 3265 3312 -1 743 251 56 84 chr12 89014981 89015466 -54770989 - MLT1H LTR MaLR 0 549 12 262 293 172 26 chr12 89016272 89016388 -54770067 - L2 LINE L2 -12 3301 3169 5510 206 129 38 chr12 89017183 89018689 -54767766 - MER52A LTR ERV1 0 1755 1 239 324 83 40 chr12 89018812 89019065 -54767390 - MLT1J LTR MaLR -148 363 100 327 333 100 64 chr12 89020530 89020921 -54765534 - MLT1J LTR MaLR 0 511 107 236 259 21 0 chr12 89021581 89021679 -54764776 + A-rich Low_complexity Low_complexity 1 150 0 399 314 79 26 chr12 89022075 89022304 -54764151 - L1M4 LINE L1 -2938 3208 2968 30 69 0 0 chr12 89022339 89022397 -54764058 + AT_rich Low_complexity Low_complexity 1 58 0 30 45 0 0 chr12 89022751 89022795 -54763660 + AT_rich Low_complexity Low_complexity 1 44 0 457 356 33 21 chr12 89023304 89023635 -54762820 - L1MEd LINE L1 -5784 335 1 22 35 0 0 chr12 89024896 89024925 -54761530 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr12 89025050 89025098 -54761357 + AT_rich Low_complexity Low_complexity 1 48 0 229 277 107 0 chr12 89025110 89025222 -54761233 - L1ME3A LINE L1 -230 5940 5817 243 358 26 7 chr12 89025374 89025525 -54760930 - L1ME3A LINE L1 -529 5641 5488 1239 189 73 4 chr12 89025544 89025651 -54760804 + AluJo SINE Alu 17 115 -197 180 0 0 0 chr12 89025651 89025671 -54760784 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1239 189 73 4 chr12 89025671 89025811 -54760644 + AluJo SINE Alu 115 281 -31 348 232 149 36 chr12 89025832 89026026 -54760429 - L1ME3A LINE L1 -691 5479 5264 321 292 85 18 chr12 89026397 89026629 -54759826 - L1ME3A LINE L1 -1217 4929 4675 301 300 70 53 chr12 89026662 89026905 -54759550 - L1ME3A LINE L1 -1530 4616 4370 228 250 0 19 chr12 89027332 89027384 -54759071 - MER49 LTR ERV1 -830 93 43 371 298 54 73 chr12 89027750 89027955 -54758500 - MLT1E LTR MaLR -199 394 194 608 210 65 16 chr12 89028191 89028315 -54758140 - MLT1E LTR MaLR -435 158 29 814 204 11 17 chr12 89028752 89028928 -54757527 - MER3 DNA MER1_type -28 181 7 31 26 0 0 chr12 89029195 89029233 -54757222 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr12 89029345 89029379 -54757076 + AT_rich Low_complexity Low_complexity 1 34 0 23 78 0 0 chr12 89029533 89029584 -54756871 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr12 89029776 89029797 -54756658 + AT_rich Low_complexity Low_complexity 1 21 0 189 310 131 35 chr12 89029803 89029948 -54756507 - MIR SINE MIR -59 203 45 21 36 0 0 chr12 89029950 89029978 -54756477 + AT_rich Low_complexity Low_complexity 1 28 0 180 114 57 29 chr12 89030010 89030080 -54756375 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 50 0 0 chr12 89031157 89031197 -54755258 + AT_rich Low_complexity Low_complexity 1 40 0 780 101 0 0 chr12 89031403 89031512 -54754943 + L1PB1 LINE L1 5672 5780 -371 323 78 20 0 chr12 89031512 89031563 -54754892 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1872 148 0 0 chr12 89031564 89031867 -54754588 + L1PB1 LINE L1 5848 6150 -1 201 175 0 0 chr12 89032101 89032141 -54754314 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 640 262 54 20 chr12 89032256 89032550 -54753905 + L1M4 LINE L1 2637 2940 -3206 8358 240 18 9 chr12 89032560 89034754 -54751701 + L1PA16 LINE L1 2789 5003 -1143 3262 141 24 0 chr12 89034778 89035353 -54751102 - L1MA2 LINE L1 0 6304 5716 13385 182 53 5 chr12 89035360 89037830 -54748625 - L1M1 LINE L1 -4965 2600 12 4936 153 19 11 chr12 89037832 89038979 -54747476 + L1PA16 LINE L1 4998 6157 -9 27 96 0 0 chr12 89038983 89039066 -54747389 + AT_rich Low_complexity Low_complexity 1 83 0 1049 205 144 28 chr12 89039152 89039528 -54746927 + MER66A LTR ERV1 97 416 -62 3541 126 3 2 chr12 89039852 89040440 -54746015 + L1PA7 LINE L1 2830 3418 -2728 * 6222 89 8 11 chr12 89040438 89041675 -54744780 + L1PA7 LINE L1 4584 5815 -339 2305 99 0 6 chr12 89041675 89041987 -54744468 + AluSg SINE Alu 1 310 0 6222 89 8 11 chr12 89041987 89042270 -54744185 + L1PA7 LINE L1 5815 6097 -57 3869 89 0 30 chr12 89042370 89042595 -54743860 + L1PA7 LINE L1 5605 5835 -319 2081 131 0 6 chr12 89042595 89042907 -54743548 + AluSg SINE Alu 1 310 0 3869 89 0 30 chr12 89042907 89043244 -54743211 + L1PA7 LINE L1 5835 6150 -4 369 239 0 0 chr12 89045534 89045605 -54740850 + Tigger5 DNA MER2_type 9 79 -2244 260 280 13 0 chr12 89045607 89045682 -54740773 - Tigger5 DNA MER2_type -6 2317 2242 * 405 247 0 0 chr12 89045672 89045753 -54740702 + Tigger5 DNA MER2_type 2242 2322 -1 22 35 0 0 chr12 89046669 89046698 -54739757 + AT_rich Low_complexity Low_complexity 1 29 0 308 357 49 57 chr12 89046707 89046886 -54739569 - L2 LINE L2 -17 3296 3118 1760 175 3 3 chr12 89046886 89047189 -54739266 - AluSx SINE Alu -9 303 1 308 357 49 57 chr12 89047189 89047272 -54739183 - L2 LINE L2 -195 3118 3036 1890 167 48 16 chr12 89047585 89047957 -54738498 - MLT1B LTR MaLR -3 387 4 7906 208 64 33 chr12 89047971 89050083 -54736372 - L1MC3 LINE L1 -32 8033 5857 4436 43 23 0 chr12 89050084 89050643 -54735812 + L1PA4 LINE L1 5584 6155 0 227 257 0 0 chr12 89050758 89050832 -54735623 + A-rich Low_complexity Low_complexity 1 74 0 924 198 4 83 chr12 89050832 89050961 -54735494 - L1MC3 LINE L1 -752 5872 5771 1701 131 0 26 chr12 89050961 89051229 -54735226 - AluSg SINE Alu -11 299 39 924 198 4 83 chr12 89051229 89051351 -54735104 - L1MC3 LINE L1 -853 5771 5641 1399 143 34 8 chr12 89051352 89051590 -54734865 - Tigger3(Golem) DNA MER2_type -2 3027 2784 976 207 36 0 chr12 89051606 89051799 -54734656 - Tigger3(Golem) DNA MER2_type -2829 200 1 3149 308 117 28 chr12 89051799 89053887 -54732568 - L1MC3 LINE L1 -784 5642 3367 888 232 86 63 chr12 89053950 89054490 -54731965 + L1M1 LINE L1 3210 3762 -3803 679 164 38 172 chr12 89054490 89054681 -54731774 + MER46A DNA MER2_type 10 165 -2566 1607 181 32 26 chr12 89054681 89054877 -54731578 - AluJb SINE Alu 0 318 118 221 0 0 33 chr12 89054877 89054907 -54731548 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1607 181 32 26 chr12 89054907 89055026 -54731429 - AluJb SINE Alu -200 118 1 679 164 38 172 chr12 89055026 89055090 -54731365 + MER46A DNA MER2_type 165 236 0 341 136 15 0 chr12 89055090 89055156 -54731299 + L1M1 LINE L1 3761 3827 -3738 * 355 221 37 98 chr12 89055155 89055399 -54731056 - L1MC3 LINE L1 -3068 3358 3130 299 276 17 52 chr12 89055408 89055457 -54730998 - LTR53 LTR ERVL -219 300 251 1505 218 33 25 chr12 89055457 89055819 -54730636 + MLT1A1 LTR MaLR 1 365 0 299 276 17 52 chr12 89055819 89055885 -54730570 - LTR53 LTR ERVL -268 251 189 655 218 60 12 chr12 89056070 89056322 -54730133 - L1MC3 LINE L1 -4018 2408 2145 670 288 85 37 chr12 89057058 89058165 -54728290 + L1ME LINE L1 706 1916 -4345 1133 291 50 24 chr12 89058801 89059217 -54727238 + MER74B LTR ERVL 122 548 -74 265 278 44 11 chr12 89059137 89059227 -54727228 - MER88 LTR ERVL -291 173 81 * 402 329 86 43 chr12 89059726 89060076 -54726379 + L1ME4a LINE L1 5604 5968 -153 22 0 0 0 chr12 89060240 89060262 -54726193 + AT_rich Low_complexity Low_complexity 1 22 0 2735 176 90 11 chr12 89060266 89060546 -54725909 + LTR69 LTR ERVL 1 257 -331 1837 177 19 8 chr12 89060546 89060908 -54725547 - MER47A DNA MER2_type 0 366 1 2735 176 90 11 chr12 89060908 89061172 -54725283 + LTR69 LTR ERVL 257 588 0 1957 151 24 9 chr12 89061504 89061835 -54724620 - MER1B DNA MER1_type -1 336 1 2964 186 9 77 chr12 89062030 89062771 -54723684 - LTR8 LTR ERV1 0 691 1 1211 119 53 16 chr12 89063977 89064290 -54722165 - THE1C LTR MaLR -2 373 1 1959 168 3 6 chr12 89064419 89064752 -54721703 + MER4C LTR ERV1 1 332 -133 359 195 0 12 chr12 89064950 89065032 -54721423 - L1M4c LINE L1 -1507 4875 4795 * 628 211 51 11 chr12 89065031 89065206 -54721249 + L1M4 LINE L1 4832 5013 -1133 * 6432 235 47 16 chr12 89065204 89067302 -54719153 - L1M4c LINE L1 -1593 4789 2582 2895 6 0 0 chr12 89067302 89067614 -54718841 - AluYb8 SINE Alu -6 312 1 6432 235 47 16 chr12 89067614 89068286 -54718169 - L1M4c LINE L1 -3800 2582 1932 847 276 111 99 chr12 89068286 89069243 -54717212 - MER52A LTR ERV1 0 1755 667 216 343 96 15 chr12 89069594 89069792 -54716663 - L2 LINE L2 -921 2393 2180 233 183 0 28 chr12 89070571 89070642 -54715813 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2181 102 3 23 chr12 89071448 89071752 -54714703 + AluSx SINE Alu 1 298 -14 318 378 109 11 chr12 89072762 89073045 -54713410 - L1M4c LINE L1 -4798 1586 1276 18948 129 22 93 chr12 89073737 89077691 -54708764 + L1PA7 LINE L1 1 3672 -2474 8574 61 2 1 chr12 89077691 89078761 -54707694 + MER11C LTR ERVK 1 1071 0 1106 115 0 0 chr12 89078778 89078934 -54707521 - HERVK11 LTR ERVK -844 7109 6954 * 32751 79 4 1 chr12 89078918 89083151 -54703304 - HERVK11 LTR ERVK -1188 6765 2522 12666 111 10 0 chr12 89083156 89084915 -54701540 - HERVK11 LTR ERVK -6017 1936 161 8643 61 2 0 chr12 89084939 89086008 -54700447 - MER11C LTR ERVK 0 1071 1 11275 102 23 33 chr12 89086008 89088512 -54697943 + L1PA7 LINE L1 3665 6152 -2 392 290 86 41 chr12 89088996 89089217 -54697238 + MIR SINE MIR 32 262 0 203 114 45 23 chr12 89090164 89090208 -54696247 - L2 LINE L2 0 3313 3269 614 252 0 15 chr12 89090403 89090538 -54695917 + FLAM_A SINE Alu 1 133 0 1471 210 11 7 chr12 89091120 89091401 -54695054 + AluJo SINE Alu 1 282 -30 192 40 0 0 chr12 89091407 89091432 -54695023 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 390 162 0 0 chr12 89091434 89091508 -54694947 + (TG)n Simple_repeat Simple_repeat 1 74 0 456 211 21 0 chr12 89092785 89092927 -54693528 + (TA)n Simple_repeat Simple_repeat 1 145 0 252 59 0 0 chr12 89092988 89093022 -54693433 + (GA)n Simple_repeat Simple_repeat 2 35 0 510 321 71 12 chr12 89093052 89093292 -54693163 + MIR SINE MIR 2 255 -7 339 165 0 0 chr12 89093701 89093786 -54692669 + CT-rich Low_complexity Low_complexity 1 85 0 523 241 114 34 chr12 89094204 89094441 -54692014 - Zaphod DNA AcHobo -6 4025 3770 22 35 0 0 chr12 89094588 89094617 -54691838 + AT_rich Low_complexity Low_complexity 1 29 0 872 320 39 19 chr12 89094670 89095085 -54691370 + LTR16B LTR ERVL 42 464 0 1305 332 77 31 chr12 89095085 89095979 -54690476 + HERV16 LTR ERVL 1 935 -4061 384 275 18 0 chr12 89095982 89096091 -54690364 + Zaphod DNA AcHobo 307 417 -3614 1051 336 125 17 chr12 89096513 89097264 -54689191 + L2 LINE L2 1685 2516 -798 385 275 43 51 chr12 89097484 89097622 -54688833 + L2 LINE L2 3174 3310 -3 27 49 0 0 chr12 89098197 89098238 -54688217 + AT_rich Low_complexity Low_complexity 1 41 0 4942 51 0 0 chr12 89098402 89099006 -54687449 + L1PA5 LINE L1 5550 6153 -1 21 36 0 0 chr12 89100167 89100195 -54686260 + AT_rich Low_complexity Low_complexity 1 28 0 202 171 49 0 chr12 89100719 89100780 -54685675 + (TCTG)n Simple_repeat Simple_repeat 1 63 0 2421 53 0 13 chr12 89101266 89101566 -54684889 + AluY SINE Alu 1 296 -15 23 33 0 0 chr12 89101671 89101701 -54684754 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr12 89102112 89102163 -54684292 + AT_rich Low_complexity Low_complexity 1 51 0 34 72 0 0 chr12 89102287 89102356 -54684099 + AT_rich Low_complexity Low_complexity 1 69 0 289 257 26 18 chr12 89102547 89102660 -54683795 - MIR SINE MIR -13 249 136 319 321 38 31 chr12 89102865 89103024 -54683431 + MIR SINE MIR 67 226 -36 1906 126 0 32 chr12 89103024 89103302 -54683153 + AluSx SINE Alu 28 296 -16 604 242 159 6 chr12 89103888 89104045 -54682410 - MER5A DNA MER1_type 0 189 9 632 212 88 92 chr12 89104468 89104842 -54681613 - MLT1E3 LTR MaLR 0 624 177 4251 196 167 67 chr12 89104842 89106367 -54680088 + MER52A LTR ERV1 1 1755 0 452 194 22 93 chr12 89106367 89106506 -54679949 - MLT1E3 LTR MaLR -446 180 52 3562 113 9 0 chr12 89108364 89108893 -54677562 + L1P4 LINE L1 5287 5820 -345 21 0 0 0 chr12 89108920 89108941 -54677514 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 89108986 89109018 -54677437 + AT_rich Low_complexity Low_complexity 1 32 0 351 263 0 0 chr12 89110237 89110317 -54676138 + Tigger5 DNA MER2_type 1 80 -2243 371 188 16 0 chr12 89110388 89110452 -54676003 + Tigger5 DNA MER2_type 2259 2323 0 461 267 93 17 chr12 89110458 89110630 -54675825 + MER110 LTR ERV1 303 487 -4 23 0 0 0 chr12 89110844 89110867 -54675588 + AT_rich Low_complexity Low_complexity 1 23 0 469 299 44 15 chr12 89111146 89111350 -54675105 - MIR SINE MIR -50 212 3 333 94 19 0 chr12 89111722 89111775 -54674680 - L1PA16 LINE L1 -4 6162 6109 26 30 0 0 chr12 89111915 89111948 -54674507 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr12 89112896 89112924 -54673531 + AT_rich Low_complexity Low_complexity 1 28 0 2087 239 90 37 chr12 89113275 89114098 -54672357 - L1ME1 LINE L1 -102 6064 5206 1154 273 19 17 chr12 89114096 89114558 -54671897 + L1ME1 LINE L1 3910 4372 -1774 * 1364 193 0 51 chr12 89114563 89114838 -54671617 + AluJo SINE Alu 35 295 -17 2437 243 40 51 chr12 89114842 89116356 -54670099 + L1ME1 LINE L1 4378 5881 -285 1008 363 99 23 chr12 89116498 89117501 -54668954 - L2 LINE L2 -270 3043 1965 21 0 0 0 chr12 89117582 89117603 -54668852 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 89119043 89119064 -54667391 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 89119629 89119668 -54666787 + AT_rich Low_complexity Low_complexity 1 39 0 3958 226 46 27 chr12 89119968 89121314 -54665141 - L1MD2 LINE L1 -24 6335 4965 269 349 0 0 chr12 89121531 89121614 -54664841 - MIR SINE MIR -178 84 2 477 117 13 0 chr12 89121677 89121754 -54664701 + MADE1 DNA Mariner 3 80 0 270 0 0 0 chr12 89121880 89121910 -54664545 + (TG)n Simple_repeat Simple_repeat 2 31 0 3282 83 24 2 chr12 89122441 89122899 -54663556 - L1PA8A LINE L1 -12 6119 5652 2037 151 20 82 chr12 89122899 89123348 -54663107 + L1PB3 LINE L1 5734 6154 0 1959 160 119 16 chr12 89123782 89124170 -54662285 + MSTA LTR MaLR 1 428 0 7942 193 33 4 chr12 89124171 89125774 -54660681 + MSTA-int LTR MaLR 2 1651 0 1065 167 102 69 chr12 89125774 89125947 -54660508 + MSTA LTR MaLR 1 186 -242 2254 87 3 7 chr12 89125947 89126247 -54660208 + AluY SINE Alu 1 299 -12 1065 167 102 69 chr12 89126247 89126318 -54660137 + MSTA LTR MaLR 186 253 -175 612 116 0 0 chr12 89126493 89126588 -54659867 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 1431 180 3 76 chr12 89126589 89126878 -54659577 - AluJo SINE Alu -43 269 2 1493 216 10 0 chr12 89127537 89127842 -54658613 - L1PA16 LINE L1 -2271 3875 3568 5596 192 48 26 chr12 89127842 89130040 -54656415 + L1PA16 LINE L1 3906 6156 -10 1614 148 46 4 chr12 89130068 89130331 -54656124 + AluSx SINE Alu 6 279 -33 180 0 0 0 chr12 89130335 89130355 -54656100 + (TAA)n Simple_repeat Simple_repeat 2 21 0 31 26 0 0 chr12 89130514 89130552 -54655903 + AT_rich Low_complexity Low_complexity 1 38 0 512 236 7 71 chr12 89130587 89130727 -54655728 + Tigger3b DNA MER2_type 1 131 -1100 1475 114 5 5 chr12 89130727 89130947 -54655508 - pTR5 LTR ERV1 -2048 390 171 334 191 53 21 chr12 89130949 89131043 -54655412 - LTR30 LTR ERV1 -80 642 546 3950 164 43 44 chr12 89131043 89132008 -54654447 - pTR5 LTR ERV1 -411 2027 742 5082 166 100 6 chr12 89132008 89133025 -54653430 + Tigger3b DNA MER2_type 119 1231 0 259 270 74 70 chr12 89133253 89133468 -54652987 - HAL1 LINE L1 -1089 1418 1203 405 95 0 0 chr12 89133468 89133531 -54652924 + (CA)n Simple_repeat Simple_repeat 2 64 0 320 273 31 87 chr12 89133531 89133692 -54652763 - HAL1 LINE L1 -1551 956 805 288 292 92 8 chr12 89133762 89133892 -54652563 - HAL1 LINE L1 -2366 141 1 372 156 0 0 chr12 89133965 89134055 -54652400 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 51 0 0 chr12 89134421 89134460 -54651995 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr12 89134633 89134666 -54651789 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 89134915 89134944 -54651511 + AT_rich Low_complexity Low_complexity 1 29 0 197 330 72 10 chr12 89135001 89135098 -54651357 - MIR3 SINE MIR 0 208 106 263 254 0 0 chr12 89135221 89135292 -54651163 - L1ME4a LINE L1 -6 6115 6045 294 271 0 0 chr12 89135923 89136019 -54650436 + (TA)n Simple_repeat Simple_repeat 2 97 0 230 174 0 0 chr12 89136019 89136065 -54650390 + LTR66 LTR ERVL 394 439 -171 2174 145 6 6 chr12 89136116 89136453 -54650002 + THE1B LTR MaLR 1 337 -27 303 28 0 0 chr12 89136484 89136520 -54649935 + (TG)n Simple_repeat Simple_repeat 1 36 0 320 247 179 49 chr12 89136611 89136773 -54649682 - L1M4 LINE L1 -1220 4926 4744 26 30 0 0 chr12 89138006 89138039 -54648416 + AT_rich Low_complexity Low_complexity 1 33 0 25 75 0 0 chr12 89138392 89138445 -54648010 + AT_rich Low_complexity Low_complexity 1 53 0 1063 204 35 116 chr12 89142223 89142625 -54643830 + L1MC3 LINE L1 5176 5515 -980 2306 83 3 0 chr12 89142625 89142925 -54643530 + AluSc SINE Alu 1 301 -8 1063 204 35 116 chr12 89142925 89143141 -54643314 + L1MC3 LINE L1 5515 5747 -748 1149 88 6 6 chr12 89143177 89143347 -54643108 - L1MA2 LINE L1 0 6304 6135 8868 222 51 23 chr12 89143347 89146393 -54640062 - L1M1 LINE L1 -4739 2826 10 455 307 116 15 chr12 89146408 89146783 -54639672 + L1MC3 LINE L1 5769 6141 -25 1234 269 75 70 chr12 89146869 89147432 -54639023 + L1MC4a LINE L1 7024 7583 -225 218 56 28 0 chr12 89147432 89147468 -54638987 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1234 269 75 70 chr12 89147468 89147569 -54638886 + L1MC4a LINE L1 7583 7682 -126 1840 153 3 0 chr12 89147569 89147887 -54638568 + AluSq SINE Alu 1 319 0 1234 269 75 70 chr12 89147887 89148001 -54638454 + L1MC4a LINE L1 7682 7808 0 2088 217 23 28 chr12 89148161 89148737 -54637718 - L1MC3 LINE L1 -1 7784 7212 2247 156 5 3 chr12 89148738 89149109 -54637346 - L1PB3 LINE L1 0 6154 5783 291 140 0 0 chr12 89149110 89149160 -54637295 + (TA)n Simple_repeat Simple_repeat 1 50 0 1369 244 72 19 chr12 89149160 89149729 -54636726 - L1M4 LINE L1 -3024 3122 2524 * 2894 147 36 0 chr12 89149724 89150416 -54636039 - L1PB3 LINE L1 -446 5717 5009 2866 248 40 82 chr12 89150397 89151030 -54635425 - L1MCb LINE L1 -4800 1764 1106 * 1212 180 38 0 chr12 89151030 89151291 -54635164 - L1MA5 LINE L1 -6 6294 6024 2866 248 40 82 chr12 89151291 89151527 -54634928 - L1MCb LINE L1 -5458 1106 862 198 0 0 0 chr12 89151527 89151549 -54634906 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2866 248 40 82 chr12 89151549 89152504 -54633951 - L1MCb LINE L1 -5702 862 19 582 253 105 87 chr12 89152575 89153843 -54632612 - L1MEc LINE L1 -2790 3425 2148 352 272 6 76 chr12 89153865 89154023 -54632432 - L1MEc LINE L1 -4518 1878 1732 1427 100 13 26 chr12 89154025 89154255 -54632200 + HSMAR2 DNA Mariner 1025 1251 -51 682 290 68 19 chr12 89154269 89155713 -54630742 - L1MEc LINE L1 -4241 1840 11 21 0 0 0 chr12 89155764 89155785 -54630670 + AT_rich Low_complexity Low_complexity 1 21 0 1227 191 52 134 chr12 89156330 89156639 -54629816 - MLT1A2 LTR MaLR -4 370 100 2435 72 10 0 chr12 89156639 89156943 -54629512 - AluSc SINE Alu -2 307 1 1227 191 52 134 chr12 89156943 89157036 -54629419 - MLT1A2 LTR MaLR -274 100 1 2005 120 13 7 chr12 89158284 89158583 -54627872 - AluSx SINE Alu -11 301 1 209 311 78 10 chr12 89159172 89159275 -54627180 + L3 LINE CR1 1353 1462 -115 234 0 0 0 chr12 89159378 89159404 -54627051 + (TG)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr12 89160559 89160586 -54625869 + (CA)n Simple_repeat Simple_repeat 2 28 0 4326 130 61 7 chr12 89160771 89161446 -54625009 + THE1B-int LTR MaLR 870 1580 0 2222 143 11 11 chr12 89161446 89161810 -54624645 + THE1B LTR MaLR 1 364 0 373 299 58 7 chr12 89162259 89162396 -54624059 - MIR SINE MIR 0 262 119 259 337 107 21 chr12 89162611 89162798 -54623657 + L2 LINE L2 3107 3309 -4 34 24 0 0 chr12 89162884 89162925 -54623530 + AT_rich Low_complexity Low_complexity 1 41 0 1070 256 52 75 chr12 89163710 89164213 -54622242 + MLT1D LTR MaLR 1 491 -14 666 112 164 40 chr12 89164498 89164650 -54621805 - L1MA9 LINE L1 -24 6288 6118 576 118 0 0 chr12 89166955 89167048 -54619407 - L1MA4A LINE L1 -4 6299 6207 322 295 0 9 chr12 89167340 89167445 -54619010 - MLT2E LTR ERVL -19 609 506 419 274 7 48 chr12 89167661 89167807 -54618648 - MLT2E LTR ERVL -457 171 32 23 0 0 0 chr12 89168228 89168251 -54618204 + AT_rich Low_complexity Low_complexity 1 23 0 219 340 29 67 chr12 89168251 89168460 -54617995 - MIR SINE MIR -13 249 49 326 44 0 0 chr12 89168683 89168728 -54617727 - L1HS LINE L1 0 6155 6111 * 3393 41 0 0 chr12 89168724 89169137 -54617318 + L1PA4 LINE L1 5707 6119 -36 23 0 0 0 chr12 89169286 89169309 -54617146 + AT_rich Low_complexity Low_complexity 1 23 0 262 306 145 76 chr12 89169786 89170618 -54615837 + L2 LINE L2 2380 3268 -4 6788 190 26 11 chr12 89171256 89171403 -54615052 - L1MA9 LINE L1 -1 6311 6168 216 0 0 0 chr12 89171403 89171427 -54615028 + (TG)n Simple_repeat Simple_repeat 1 24 0 6788 190 26 11 chr12 89171427 89173702 -54612753 - L1MA9 LINE L1 -144 6168 3858 23 0 0 0 chr12 89173873 89173896 -54612559 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 89174374 89174402 -54612053 + AT_rich Low_complexity Low_complexity 1 28 0 242 213 40 33 chr12 89174996 89175146 -54611309 + (TTATA)n Simple_repeat Simple_repeat 3 153 0 226 245 0 47 chr12 89175448 89175554 -54610901 + A-rich Low_complexity Low_complexity 1 101 0 476 115 103 0 chr12 89176202 89176289 -54610166 - L1PA10 LINE L1 -2 6166 6071 252 153 0 0 chr12 89176665 89176724 -54609731 + LTR66 LTR ERVL 395 453 -157 22 0 0 0 chr12 89176790 89176812 -54609643 + AT_rich Low_complexity Low_complexity 1 22 0 1520 184 41 14 chr12 89177071 89177365 -54609090 - THE1B LTR MaLR -19 345 44 184 50 100 0 chr12 89178021 89178061 -54608394 + (TTAAA)n Simple_repeat Simple_repeat 2 45 0 2139 97 3 17 chr12 89179017 89179194 -54607261 - AluSx SINE Alu -2 310 137 2162 121 0 10 chr12 89179194 89179507 -54606948 - AluSg SINE Alu 0 310 1 2139 97 3 17 chr12 89179507 89179629 -54606826 - AluSx SINE Alu -175 137 15 23 0 0 0 chr12 89180710 89180733 -54605722 + AT_rich Low_complexity Low_complexity 1 23 0 199 296 0 0 chr12 89180812 89180856 -54605599 + L3 LINE CR1 1394 1437 -140 2497 198 12 6 chr12 89181068 89181584 -54604871 + L1P LINE L1 4830 5348 -798 4089 117 22 3 chr12 89181749 89182383 -54604072 - L1PA13 LINE L1 -4 6159 5514 321 235 47 24 chr12 89182468 89182553 -54603902 + L1MC4 LINE L1 6617 6703 -1339 1720 37 14 0 chr12 89182554 89182769 -54603686 - L1PA5 LINE L1 -9 6145 5928 5405 47 6 1 chr12 89182769 89183453 -54603002 + L1P LINE L1 4399 5085 -1061 559 95 12 0 chr12 89183450 89183534 -54602921 - L1P4 LINE L1 -634 5529 5445 * 296 344 105 34 chr12 89183906 89184239 -54602216 - L2 LINE L2 -256 3057 2699 241 307 112 34 chr12 89184485 89184690 -54601765 - L2 LINE L2 -1340 1974 1754 22 56 0 0 chr12 89184939 89184975 -54601480 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 89185742 89185768 -54600687 + AT_rich Low_complexity Low_complexity 1 26 0 219 108 0 0 chr12 89186231 89186238 -54600217 + (GGAGAA)n Simple_repeat Simple_repeat 5 11 -30 1948 157 3 0 chr12 89186238 89186544 -54599911 + AluSx SINE Alu 1 307 -5 219 108 0 0 chr12 89186544 89186573 -54599882 + (GGAGAA)n Simple_repeat Simple_repeat 10 41 0 262 190 0 47 chr12 89186582 89186665 -54599790 + L1ME LINE L1 5351 5430 -732 1517 152 4 0 chr12 89187746 89187989 -54598466 - Tigger5 DNA MER2_type 0 2323 2080 235 313 16 0 chr12 89187972 89188036 -54598419 - Tigger5 DNA MER2_type -2222 101 37 * 610 271 85 38 chr12 89188157 89188522 -54597933 + Charlie2 DNA MER1_type 2481 2862 0 252 360 54 48 chr12 89189165 89189312 -54597143 - L2 LINE L2 -4 3268 3121 21 36 0 0 chr12 89189885 89189913 -54596542 + AT_rich Low_complexity Low_complexity 1 28 0 2787 163 85 11 chr12 89191025 89191579 -54594876 - LTR49 LTR ERV1 0 595 1 389 237 97 9 chr12 89191980 89192094 -54594361 - MER67D LTR ERV1 0 514 391 1219 189 61 109 chr12 89192144 89192535 -54593920 - MER67C LTR ERV1 -234 280 2 1751 128 0 18 chr12 89193620 89193894 -54592561 + AluSq SINE Alu 44 312 -1 380 317 50 8 chr12 89194033 89194153 -54592302 + MIR SINE MIR 20 144 -118 218 191 0 24 chr12 89194189 89194231 -54592224 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr12 89194345 89194377 -54592078 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 89195271 89195295 -54591160 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 * 221 56 0 28 chr12 89195294 89195330 -54591125 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6533 27 1 1 chr12 89195330 89196103 -54590352 - L1PA3 LINE L1 -24 6131 5359 675 256 48 39 chr12 89196301 89196508 -54589947 - MER63A DNA MER1_type 0 210 2 252 22 67 0 chr12 89196754 89196799 -54589656 + (TA)n Simple_repeat Simple_repeat 2 49 0 286 219 55 0 chr12 89197638 89197711 -54588744 - LTR50 LTR ERVL 0 795 719 273 300 20 10 chr12 89197790 89197890 -54588565 - LTR50 LTR ERVL -211 584 484 884 191 154 0 chr12 89197951 89198171 -54588284 - LTR50 LTR ERVL -516 279 26 233 254 46 39 chr12 89198430 89198560 -54587895 + HAL1b LINE L1 702 832 -516 897 243 0 31 chr12 89198750 89198976 -54587479 - MER20 DNA MER1_type 0 219 1 22 88 0 0 chr12 89199294 89199351 -54587104 + AT_rich Low_complexity Low_complexity 1 57 0 1741 168 144 8 chr12 89199408 89199783 -54586672 - MSTA LTR MaLR -2 426 1 8525 160 16 38 chr12 89199783 89201396 -54585059 - MSTA-int LTR MaLR 0 1580 3 1524 150 160 54 chr12 89201398 89201785 -54584670 - MSTA LTR MaLR 0 428 1 500 294 68 60 chr12 89203028 89203216 -54583239 - MIR SINE MIR 0 262 70 2087 82 31 24 chr12 89203216 89203509 -54582946 - AluY SINE Alu -16 295 1 500 294 68 60 chr12 89203509 89203572 -54582883 - MIR SINE MIR -192 70 9 25 51 0 0 chr12 89203574 89203613 -54582842 + AT_rich Low_complexity Low_complexity 1 39 0 787 251 0 6 chr12 89203954 89204121 -54582334 + FRAM SINE Alu 1 166 0 421 277 75 59 chr12 89205818 89206071 -54580384 - MER110 LTR ERV1 -37 454 198 893 241 18 26 chr12 89206865 89207093 -54579362 - MER45C DNA AcHobo -2 951 726 686 308 115 28 chr12 89207322 89207543 -54578912 - MER45C DNA AcHobo -600 353 92 661 222 0 0 chr12 89207543 89207681 -54578774 - FLAM_A SINE Alu 0 138 1 686 308 115 28 chr12 89207681 89207778 -54578677 - MER45C DNA AcHobo -861 92 5 405 58 0 0 chr12 89209582 89209634 -54576821 + (CA)n Simple_repeat Simple_repeat 1 52 0 697 245 59 68 chr12 89209852 89210245 -54576210 - L1 LINE L1 -2130 4016 3628 278 304 17 35 chr12 89210263 89210378 -54576077 + L2 LINE L2 2615 2727 -587 255 204 0 0 chr12 89211065 89211119 -54575336 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 252 135 0 0 chr12 89211594 89211631 -54574824 + tRNA-Val-GTG tRNA tRNA 1 37 -39 253 205 24 12 chr12 89212997 89213080 -54573375 + (TA)n Simple_repeat Simple_repeat 1 84 0 324 285 56 21 chr12 89213505 89213649 -54572806 + HsTC2b DNA Tc2 8 156 -759 * 823 254 101 41 chr12 89213647 89214084 -54572371 + HsTC2b DNA Tc2 282 920 0 320 204 0 57 chr12 89214402 89214490 -54571965 - MER103 DNA DNA -2 164 82 22 88 0 0 chr12 89214716 89214773 -54571682 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr12 89215055 89215081 -54571374 + AT_rich Low_complexity Low_complexity 1 26 0 1536 203 14 0 chr12 89215084 89215365 -54571090 - AluJb SINE Alu -25 287 3 227 271 17 0 chr12 89216863 89216922 -54569533 - L3 LINE CR1 -108 1469 1410 216 406 73 14 chr12 89217017 89217236 -54569219 - L3 LINE CR1 -309 1268 1037 1226 203 0 0 chr12 89217742 89217984 -54568471 - L1PA16 LINE L1 0 6166 5925 4781 218 23 14 chr12 89217987 89219155 -54567300 - L1PA16 LINE L1 -958 5188 4010 2416 78 0 0 chr12 89219281 89219590 -54566865 + AluY SINE Alu 1 309 -2 22 0 0 0 chr12 89219756 89219778 -54566677 + AT_rich Low_complexity Low_complexity 1 22 0 2625 39 0 3 chr12 89219950 89220262 -54566193 - AluY SINE Alu 0 311 1 230 234 0 47 chr12 89220632 89220696 -54565759 + MER103 DNA DNA 49 109 -57 180 179 0 0 chr12 89220750 89220789 -54565666 + (TA)n Simple_repeat Simple_repeat 2 40 0 531 258 3 26 chr12 89220800 89221112 -54565343 + (TATATG)n Simple_repeat Simple_repeat 1 305 0 265 129 16 16 chr12 89221157 89221219 -54565236 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1196 204 53 4 chr12 89221935 89222080 -54564375 - AluJb SINE Alu -35 277 141 2088 78 18 4 chr12 89222080 89222361 -54564094 - AluSc SINE Alu -7 302 18 1196 204 53 4 chr12 89222361 89222479 -54563976 - AluJb SINE Alu -171 141 1 1046 159 77 0 chr12 89222534 89222741 -54563714 + L1MA4 LINE L1 6073 6295 -5 203 27 0 81 chr12 89222940 89222977 -54563478 + (GAATG)n Simple_repeat Simple_repeat 4 37 0 28 0 0 0 chr12 89223018 89223046 -54563409 + AT_rich Low_complexity Low_complexity 1 28 0 463 356 42 24 chr12 89223581 89223960 -54562495 + L1 LINE L1 4487 4872 -1274 355 256 0 23 chr12 89225243 89225329 -54561126 - L2 LINE L2 -10 3303 3220 22 35 0 0 chr12 89225910 89225939 -54560516 + AT_rich Low_complexity Low_complexity 1 29 0 4348 193 12 40 chr12 89226105 89226444 -54560011 - MER54A LTR ERVL 0 901 554 2437 57 3 16 chr12 89226444 89226758 -54559697 + AluY SINE Alu 1 310 -1 4348 193 12 40 chr12 89226758 89227345 -54559110 - MER54A LTR ERVL -347 554 1 1429 189 121 36 chr12 89228093 89228458 -54557997 - MSTD LTR MaLR 0 396 1 201 171 0 0 chr12 89229745 89229780 -54556675 + T-rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 89229971 89229995 -54556460 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 89230897 89230918 -54555537 + AT_rich Low_complexity Low_complexity 1 21 0 424 285 114 6 chr12 89231131 89231289 -54555166 - MIR SINE MIR -48 214 40 1514 138 0 114 chr12 89231822 89232155 -54554300 - AluSx SINE Alu -17 295 1 3864 18 0 0 chr12 89232306 89232748 -54553707 + L1PA3 LINE L1 5568 6009 -146 447 348 66 9 chr12 89232887 89233114 -54553341 + LTR16B LTR ERVL 217 456 -8 234 213 125 25 chr12 89233935 89234015 -54552440 + MLT1I LTR MaLR 322 409 0 324 0 0 0 chr12 89234715 89234751 -54551704 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 209 0 0 chr12 89235992 89236035 -54550420 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 644 21 42 21 chr12 89236230 89236326 -54550129 + L1PA4 LINE L1 6055 6152 -3 1240 166 4 8 chr12 89236326 89236579 -54549876 - L1PA13 LINE L1 -794 5352 5101 5372 119 10 4 chr12 89236581 89237393 -54549062 + L1PA13 LINE L1 5343 6159 -4 24 0 0 0 chr12 89238030 89238054 -54548401 + AT_rich Low_complexity Low_complexity 1 24 0 247 328 68 36 chr12 89238577 89238769 -54547686 + MIR SINE MIR 23 220 -42 558 213 0 55 chr12 89238876 89239003 -54547452 - MER20 DNA MER1_type -98 121 2 22 56 0 0 chr12 89239265 89239301 -54547154 + AT_rich Low_complexity Low_complexity 1 36 0 419 0 20 0 chr12 89240125 89240176 -54546279 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 200 318 131 19 chr12 89240357 89240464 -54545991 + L3 LINE CR1 1385 1503 -74 2474 54 0 0 chr12 89241645 89241939 -54544516 + AluY SINE Alu 6 299 -12 29 78 0 0 chr12 89242077 89242141 -54544314 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr12 89242502 89242532 -54543923 + AT_rich Low_complexity Low_complexity 1 30 0 291 157 0 0 chr12 89242598 89242649 -54543806 + (TA)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr12 89242649 89242682 -54543773 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 263 88 7 chr12 89243149 89243286 -54543169 + L1MC1 LINE L1 1277 1424 -4999 21 0 0 0 chr12 89243439 89243460 -54542995 + AT_rich Low_complexity Low_complexity 1 21 0 277 250 26 68 chr12 89243585 89243777 -54542678 + L1MC1 LINE L1 1968 2151 -4790 586 241 93 19 chr12 89243799 89244056 -54542399 - L1M4 LINE L1 -3708 2438 2163 6236 231 55 11 chr12 89247098 89248684 -54537771 + L1MC1 LINE L1 4031 5546 -1582 207 0 0 0 chr12 89248684 89248707 -54537748 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6236 231 55 11 chr12 89248707 89249527 -54536928 + L1MC1 LINE L1 5546 6328 -800 2213 145 11 24 chr12 89249527 89249907 -54536548 + THE1C LTR MaLR 1 375 0 6236 231 55 11 chr12 89249907 89250466 -54535989 + L1MC1 LINE L1 6328 7128 0 183 42 0 0 chr12 89250478 89250502 -54535953 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2246 97 0 3 chr12 89252658 89252958 -54533497 - AluSc SINE Alu 0 309 11 201 39 0 0 chr12 89253035 89253061 -54533394 + (TTG)n Simple_repeat Simple_repeat 1 26 0 210 91 0 0 chr12 89254147 89254180 -54532275 + (TAA)n Simple_repeat Simple_repeat 1 33 0 197 299 82 21 chr12 89254906 89255003 -54531452 - MIR SINE MIR -109 153 51 662 355 39 0 chr12 89255096 89255355 -54531100 + LTR16A LTR ERVL 182 450 0 1535 61 0 0 chr12 89255813 89256010 -54530445 - L1PA4 LINE L1 -3 6152 5956 2395 217 120 82 chr12 89256322 89256902 -54529553 - L1MC3 LINE L1 -1 7784 7080 226 279 15 29 chr12 89256902 89256970 -54529485 - MLT1F1 LTR MaLR -443 124 58 2395 217 120 82 chr12 89256970 89257378 -54529077 - L1MC3 LINE L1 -705 7080 6689 437 303 25 87 chr12 89257443 89257684 -54528771 + L2 LINE L2 3078 3303 -10 8578 217 37 21 chr12 89258079 89261427 -54525028 - L1PA16 LINE L1 0 6817 3445 21 36 0 0 chr12 89261453 89261481 -54524974 + AT_rich Low_complexity Low_complexity 1 28 0 4209 264 35 17 chr12 89261481 89263140 -54523315 - L1PA16 LINE L1 -3726 3071 1438 453 315 64 43 chr12 89263410 89264006 -54522449 - L1PA16 LINE L1 -5276 1511 245 21 82 0 0 chr12 89264096 89264145 -54522310 + AT_rich Low_complexity Low_complexity 1 49 0 634 300 5 14 chr12 89264289 89264499 -54521956 - MER63A DNA MER1_type 0 210 3 1027 259 31 0 chr12 89265610 89265865 -54520590 - MER82 DNA MER2_type -1 652 390 203 32 65 0 chr12 89265877 89265908 -54520547 + CT-rich Low_complexity Low_complexity 3 35 0 902 232 89 12 chr12 89265909 89266168 -54520287 - MER82 DNA MER2_type -252 401 123 226 261 14 0 chr12 89266682 89266751 -54519704 + (TA)n Simple_repeat Simple_repeat 1 70 0 219 351 64 23 chr12 89266751 89266922 -54519533 - MIR SINE MIR -56 206 29 2196 106 0 13 chr12 89267214 89267525 -54518930 - AluSq SINE Alu -6 307 1 573 224 12 0 chr12 89267544 89267709 -54518746 + Charlie5 DNA MER1_type 2458 2624 0 517 275 35 35 chr12 89267814 89267956 -54518499 - MLT1G1 LTR MaLR -175 420 279 724 265 32 16 chr12 89269409 89269594 -54516861 + MIR SINE MIR 52 239 -23 899 259 53 91 chr12 89269649 89270024 -54516431 + L2 LINE L2 1957 2317 -997 253 183 62 124 chr12 89270035 89270105 -54516350 - MER69A DNA AcHobo -2350 176 117 2120 123 3 7 chr12 89270105 89270406 -54516049 + AluSx SINE Alu 1 300 -12 253 183 62 124 chr12 89270406 89270460 -54515995 - MER69A DNA AcHobo -2409 117 61 * 2224 112 64 0 chr12 89270437 89270750 -54515705 + LTR18A LTR ERVL 25 357 0 16628 179 6 10 chr12 89270764 89273523 -54512932 + HERVL18 LTR ERVL 9 2757 -3290 2674 149 0 2 chr12 89273512 89273915 -54512540 + HERVL18 LTR ERVL 5646 6047 0 * 696 102 0 10 chr12 89273920 89274018 -54512437 + LTR18A LTR ERVL 244 340 -17 25 31 0 0 chr12 89274335 89274367 -54512088 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr12 89274676 89274701 -54511754 + (A)n Simple_repeat Simple_repeat 1 25 0 3311 159 2 16 chr12 89274796 89275373 -54511082 + L1PA16 LINE L1 5589 6157 -9 683 216 20 7 chr12 89275742 89275895 -54510560 + MER20 DNA MER1_type 6 160 -59 1523 169 22 4 chr12 89275896 89276163 -54510292 + MLT2B2 LTR ERVL 1 272 -243 6587 195 75 64 chr12 89276686 89278416 -54508039 + MER52A LTR ERV1 7 1755 0 781 196 36 134 chr12 89278421 89278697 -54507758 + MLT2B2 LTR ERVL 267 515 0 348 231 0 0 chr12 89278697 89278759 -54507696 + MER20 DNA MER1_type 157 218 -1 2153 63 3 33 chr12 89279122 89279422 -54507033 - AluY SINE Alu 0 311 21 1793 151 63 33 chr12 89279563 89279927 -54506528 - THE1C LTR MaLR 0 375 1 2038 92 40 0 chr12 89280205 89280505 -54505950 - AluY SINE Alu 0 311 1 25 0 0 0 chr12 89280819 89280844 -54505611 + AT_rich Low_complexity Low_complexity 1 25 0 407 315 103 14 chr12 89281327 89281540 -54504915 - MIR SINE MIR -11 251 20 443 310 119 31 chr12 89281654 89281880 -54504575 - MIR SINE MIR -4 258 13 207 100 0 0 chr12 89282120 89282150 -54504305 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2201 56 0 7 chr12 89282655 89282941 -54503514 + L1PA8 LINE L1 5886 6169 -3 3199 111 6 0 chr12 89283484 89283953 -54502502 - L1PA8 LINE L1 -2 6170 5699 243 81 0 0 chr12 89283953 89283990 -54502465 + L1PA8 LINE L1 5647 5683 -448 906 172 30 1 chr12 89284379 89284566 -54501889 + L1MA9 LINE L1 6027 6159 -5 9877 45 1 0 chr12 89285636 89286864 -54499591 - L1P LINE L1 -798 5348 4120 * 14837 42 1 1 chr12 89286860 89288715 -54497740 + L1P LINE L1 2258 4112 -2034 21 0 0 0 chr12 89288758 89288779 -54497676 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 89289099 89289135 -54497320 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr12 89289851 89289884 -54496571 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr12 89290684 89290714 -54495741 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 89291940 89291972 -54494483 + AT_rich Low_complexity Low_complexity 1 32 0 3822 39 0 0 chr12 89292239 89292699 -54493756 + L1PA5 LINE L1 5695 6154 0 283 314 8 0 chr12 89293547 89293668 -54492787 + L1M4 LINE L1 4133 4254 -1892 21 0 0 0 chr12 89294179 89294200 -54492255 + AT_rich Low_complexity Low_complexity 1 21 0 233 241 46 11 chr12 89294200 89294290 -54492165 + L1ME LINE L1 5747 5839 -331 22 35 0 0 chr12 89294549 89294578 -54491877 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 89294611 89294637 -54491818 + AT_rich Low_complexity Low_complexity 1 26 0 278 264 36 57 chr12 89294820 89294960 -54491495 + MIR SINE MIR 90 226 -36 192 77 0 0 chr12 89295217 89295243 -54491212 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2671 132 25 8 chr12 89295243 89295600 -54490855 - L1PB1 LINE L1 -10 6141 5773 201 74 0 0 chr12 89295600 89295627 -54490828 + (TA)n Simple_repeat Simple_repeat 1 27 0 2671 132 25 8 chr12 89295627 89295740 -54490715 - L1PB1 LINE L1 -378 5773 5663 9170 208 17 14 chr12 89295843 89296860 -54489595 - L1P5 LINE L1 -436 5715 4703 4480 68 3 2 chr12 89296860 89297438 -54489017 - L1PA7 LINE L1 -9 6145 5567 9170 208 17 14 chr12 89297438 89299182 -54487273 - L1P5 LINE L1 -1448 4703 2944 3587 204 36 19 chr12 89299199 89299996 -54486459 - L1MC1 LINE L1 -110 6503 5693 * 5293 237 53 26 chr12 89299994 89302635 -54483820 - L1MC1 LINE L1 -2011 4415 1712 22 35 0 0 chr12 89352825 89352854 -54433601 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 89353143 89353168 -54433287 + AT_rich Low_complexity Low_complexity 1 25 0 841 218 19 43 chr12 89353453 89353664 -54432791 + AluJo SINE Alu 1 206 -106 1374 275 103 14 chr12 89353681 89354099 -54432356 + LTR16B LTR ERVL 2 456 -8 2221 98 0 0 chr12 89354452 89354738 -54431717 + AluSg SINE Alu 8 293 -17 1214 263 27 37 chr12 89355474 89355884 -54430571 + MLT1C LTR MaLR 62 467 0 5055 207 48 34 chr12 89356322 89358020 -54428435 - L1MC2 LINE L1 0 6344 4617 593 262 179 28 chr12 89358875 89359251 -54427204 - LTR50 LTR ERVL -220 575 44 25 0 0 0 chr12 89359251 89359276 -54427179 + AT_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 89360360 89360392 -54426063 + (TG)n Simple_repeat Simple_repeat 2 33 0 183 335 92 61 chr12 89361385 89361549 -54424906 - MER5A DNA MER1_type -7 182 14 280 328 146 12 chr12 89361574 89361745 -54424710 + MLT1H LTR MaLR 31 224 -325 325 196 49 108 chr12 89361789 89361891 -54424564 + MLT1H LTR MaLR 454 549 0 304 341 37 43 chr12 89361907 89362071 -54424384 - L1ME LINE L1 -496 5625 5463 868 162 26 103 chr12 89362486 89362720 -54423735 + MLT1C LTR MaLR 4 219 -248 1529 243 25 57 chr12 89362758 89363195 -54423260 + MLT1C-int LTR MaLR 949 1371 0 6701 277 51 54 chr12 89363554 89369755 -54416700 - MER50-int LTR ERV1 -1070 6021 97 229 323 0 0 chr12 89369755 89369820 -54416635 + GA-rich Low_complexity Low_complexity 1 65 0 411 248 41 8 chr12 89369824 89369945 -54416510 - MER50-int LTR ERV1 -7080 125 1 1196 290 86 56 chr12 89369986 89370580 -54415875 - MER50 LTR ERV1 -44 690 79 393 241 134 0 chr12 89370638 89370750 -54415705 - MER50 LTR ERV1 -607 127 1 1639 218 41 39 chr12 89370753 89371217 -54415238 + MLT1C LTR MaLR 1 465 -2 234 253 36 0 chr12 89371238 89371321 -54415134 - L1ME LINE L1 -1161 4985 4900 490 295 101 66 chr12 89371454 89372058 -54414397 - L1ME LINE L1 -1353 4793 4169 270 216 6 168 chr12 89373547 89373714 -54412741 + L2 LINE L2 3098 3237 -76 2674 202 58 8 chr12 89373919 89374542 -54411913 - L1MC3 LINE L1 -1 7784 7131 23 0 0 0 chr12 89374551 89374574 -54411881 + AT_rich Low_complexity Low_complexity 1 23 0 650 205 186 14 chr12 89374574 89374789 -54411666 - AluJo SINE Alu -12 300 49 242 191 0 0 chr12 89374793 89374840 -54411615 - Alu SINE Alu -87 215 169 1510 218 30 25 chr12 89374840 89375234 -54411221 - L1MC3 LINE L1 -690 7095 6700 323 260 40 6 chr12 89375298 89375471 -54410984 + (TA)n Simple_repeat Simple_repeat 2 180 0 1956 112 20 0 chr12 89376175 89376469 -54409986 + AluSx SINE Alu 1 300 -12 517 308 104 36 chr12 89376877 89377226 -54409229 + L1ME LINE L1 61 385 -5876 333 0 0 0 chr12 89377226 89377263 -54409192 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 517 308 104 36 chr12 89377263 89378343 -54408112 + L1ME LINE L1 385 1641 -4620 1758 124 57 86 chr12 89378465 89378851 -54407604 + THE1C LTR MaLR 1 375 0 854 280 81 9 chr12 89379105 89379562 -54406893 + L1ME LINE L1 2252 2741 -3339 180 0 0 0 chr12 89379572 89379592 -54406863 + (TA)n Simple_repeat Simple_repeat 2 21 0 353 307 57 0 chr12 89379603 89379815 -54406640 + L1ME LINE L1 2831 3054 -3026 287 28 0 0 chr12 89379844 89379880 -54406575 - L1MB7 LINE L1 -8 6176 6141 635 287 61 6 chr12 89379881 89380062 -54406393 - L1M4b LINE L1 -6254 605 415 312 214 32 24 chr12 89380080 89380206 -54406249 - L1MCb LINE L1 -1621 4943 4817 722 245 37 29 chr12 89380217 89380462 -54405993 - L1MA9 LINE L1 -38 6274 6028 * 2951 259 72 23 chr12 89380451 89381737 -54404718 - L1MCb LINE L1 -1713 4851 3504 2718 266 83 30 chr12 89381735 89383734 -54402721 - L1MCb LINE L1 -4218 2346 221 * 2531 160 2 23 chr12 89383964 89384401 -54402054 - MSTA LTR MaLR 0 428 1 295 273 40 20 chr12 89384915 89385014 -54401441 - L1ME3A LINE L1 -5 6165 6065 296 299 0 0 chr12 89385014 89385101 -54401354 - L1ME3A LINE L1 -64 6106 6020 227 153 0 85 chr12 89385289 89385348 -54401107 - MLT1I LTR MaLR -14 395 342 309 298 39 0 chr12 89385528 89385632 -54400823 - MLT1J2 LTR MaLR -307 143 36 24 0 0 0 chr12 89386375 89386399 -54400056 + AT_rich Low_complexity Low_complexity 1 24 0 248 77 26 0 chr12 89386425 89386464 -54399991 + (CA)n Simple_repeat Simple_repeat 2 41 0 184 230 14 122 chr12 89386755 89386829 -54399626 + MER5A DNA MER1_type 18 83 -106 186 0 57 29 chr12 89386994 89387029 -54399426 + (CAA)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr12 89387860 89387892 -54398563 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chr12 89389832 89389853 -54396602 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 89390709 89390740 -54395715 + AT_rich Low_complexity Low_complexity 1 31 0 67 42 0 0 chr12 89391030 89391125 -54395330 + AT_rich Low_complexity Low_complexity 1 95 0 240 185 0 0 chr12 89391816 89391870 -54394585 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 185 278 83 46 chr12 89392013 89392121 -54394334 - MIR SINE MIR -46 216 105 180 0 0 0 chr12 89392305 89392325 -54394130 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 89392441 89392469 -54393986 + AT_rich Low_complexity Low_complexity 1 28 0 1966 142 140 10 chr12 89393040 89393419 -54393036 + MSTA LTR MaLR 1 425 -3 8351 186 25 15 chr12 89393419 89395033 -54391422 + MSTA-int LTR MaLR 17 1646 -5 1557 172 164 8 chr12 89395040 89395407 -54391048 + MSTA LTR MaLR 3 426 -2 225 0 0 0 chr12 89395444 89395469 -54390986 + (CA)n Simple_repeat Simple_repeat 2 26 0 343 321 29 21 chr12 89395941 89396081 -54390374 - MIR SINE MIR -44 218 78 203 231 15 15 chr12 89396248 89396313 -54390142 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 309 131 16 16 chr12 89396529 89396590 -54389865 + MLT1I LTR MaLR 330 390 -19 1372 188 15 33 chr12 89396713 89397043 -54389412 - L1MA10 LINE L1 0 6334 6011 22 0 0 0 chr12 89397838 89397860 -54388595 + AT_rich Low_complexity Low_complexity 1 22 0 190 281 37 61 chr12 89398673 89398755 -54387700 + MIR3 SINE MIR 118 197 -11 27 29 0 0 chr12 89399206 89399240 -54387215 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr12 89399280 89399316 -54387139 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr12 89399449 89399479 -54386976 + AT_rich Low_complexity Low_complexity 1 30 0 618 172 108 13 chr12 89400174 89400331 -54386124 - L1MA8 LINE L1 -3 6288 6117 5597 176 38 7 chr12 89400335 89402367 -54384088 - L1MA4A LINE L1 -5 6298 4226 * 10893 228 55 36 chr12 89402341 89403322 -54383133 - L1 LINE L1 -1466 5382 4421 276 30 0 0 chr12 89403322 89403355 -54383100 + (TTG)n Simple_repeat Simple_repeat 1 33 0 10893 228 55 36 chr12 89403355 89405669 -54380786 - L1 LINE L1 -2427 4421 2097 2278 51 10 14 chr12 89405669 89405989 -54380466 - AluY SINE Alu 0 311 1 10893 228 55 36 chr12 89405989 89408123 -54378332 - L1 LINE L1 -4751 2097 4 754 161 71 6 chr12 89408124 89408292 -54378163 - L1MA8 LINE L1 -161 6130 5952 2152 176 45 47 chr12 89408313 89408785 -54377670 + L1MA8 LINE L1 5433 5903 -388 348 148 0 0 chr12 89411234 89411295 -54375160 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr12 89411528 89411549 -54374906 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 89411756 89411784 -54374671 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 89413473 89413496 -54372959 + AT_rich Low_complexity Low_complexity 1 23 0 1519 231 51 127 chr12 89414508 89415055 -54371400 - L1ME1 LINE L1 -5 6230 5643 1938 78 3 54 chr12 89415055 89415515 -54370940 - AluY SINE Alu 0 445 1 744 10 40 0 chr12 89415515 89415615 -54370840 + (TTTTA)n Simple_repeat Simple_repeat 1 104 0 403 145 121 0 chr12 89415615 89415698 -54370757 - FLAM_A SINE Alu -19 114 22 1519 231 51 127 chr12 89415698 89416100 -54370355 - L1ME1 LINE L1 -589 5646 5290 1510 250 39 89 chr12 89416097 89416831 -54369624 - L1ME1 LINE L1 -1984 4231 3536 * 1646 164 93 47 chr12 89416831 89416898 -54369557 - MSTA LTR MaLR 0 428 366 2778 16 0 0 chr12 89416898 89417212 -54369243 - AluYb8 SINE Alu -4 314 1 1646 164 93 47 chr12 89417212 89417553 -54368902 - MSTA LTR MaLR -62 366 1 1510 250 39 89 chr12 89417553 89417590 -54368865 - L1ME1 LINE L1 -2679 3536 3499 1398 263 23 41 chr12 89417586 89418431 -54368024 - L1ME1 LINE L1 -3394 2821 2034 * 36 53 0 0 chr12 89418471 89418528 -54367927 + AT_rich Low_complexity Low_complexity 1 57 0 1085 294 78 71 chr12 89418598 89419301 -54367154 - L1MEc LINE L1 -4002 2394 1697 189 0 0 0 chr12 89419301 89419322 -54367133 + (TG)n Simple_repeat Simple_repeat 2 22 0 1085 294 78 71 chr12 89419322 89420149 -54366306 - L1MEc LINE L1 -4699 1697 854 2001 40 48 4 chr12 89420441 89420692 -54365763 + AluY SINE Alu 22 283 -28 487 266 72 0 chr12 89423351 89423490 -54362965 - MLT1L LTR MaLR -46 569 421 180 0 0 0 chr12 89423577 89423597 -54362858 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 258 296 41 0 chr12 89424336 89424434 -54362021 - MIR SINE MIR -15 247 146 231 346 10 0 chr12 89425006 89425110 -54361345 + (CATA)n Simple_repeat Simple_repeat 2 106 0 827 0 57 0 chr12 89426361 89426484 -54359971 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 180 0 0 0 chr12 89426667 89426687 -54359768 + (CCA)n Simple_repeat Simple_repeat 1 20 0 339 289 33 20 chr12 89427215 89427367 -54359088 - ERVL LTR ERVL -1133 4631 4478 1393 249 61 33 chr12 89427422 89427913 -54358542 - MLT1D LTR MaLR 0 505 1 983 333 92 34 chr12 89428057 89428804 -54357651 - ERVL LTR ERVL -1570 4194 3404 2148 125 19 27 chr12 89428849 89429225 -54357230 + THE1C LTR MaLR 1 373 -2 404 329 40 69 chr12 89429336 89429640 -54356815 - L2 LINE L2 -5 3308 3014 * 518 341 49 71 chr12 89429636 89429873 -54356582 - L2 LINE L2 -467 2847 2621 1298 207 7 57 chr12 89429873 89430173 -54356282 - AluJb SINE Alu -27 285 1 518 341 49 71 chr12 89430173 89430342 -54356113 - L2 LINE L2 -693 2621 2450 632 332 15 0 chr12 89430434 89430630 -54355825 - MIR SINE MIR -62 200 2 2470 34 3 7 chr12 89431008 89431306 -54355149 + AluY SINE Alu 1 297 -14 1945 104 10 21 chr12 89433107 89433396 -54353059 + AluSc SINE Alu 3 288 -21 373 77 231 0 chr12 89434164 89434229 -54352226 + MADE1 DNA Mariner 1 80 0 312 278 188 30 chr12 89434236 89434369 -54352086 - MER5A DNA MER1_type 0 189 36 31 0 0 0 chr12 89434638 89434669 -54351786 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr12 89434899 89434938 -54351517 + AT_rich Low_complexity Low_complexity 1 39 0 243 280 20 20 chr12 89436032 89436132 -54350323 + L1P4 LINE L1 6 105 -5770 274 152 0 0 chr12 89436132 89436178 -54350277 + LTR19B LTR ERV1 1 46 -534 1143 272 23 17 chr12 89436182 89436535 -54349920 + L1P4 LINE L1 480 834 -5041 21821 145 11 40 chr12 89436536 89439531 -54346924 + L1P4 LINE L1 1724 4533 -1956 1996 149 7 0 chr12 89439531 89439833 -54346622 - AluSx SINE Alu -8 304 1 21821 145 11 40 chr12 89439833 89441267 -54345188 + L1P4 LINE L1 4533 6007 -482 6521 224 115 15 chr12 89441421 89443080 -54343375 + L1MC3 LINE L1 5210 7171 -614 183 80 0 0 chr12 89443080 89443105 -54343350 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6521 224 115 15 chr12 89443105 89443773 -54342682 + L1MC3 LINE L1 7171 7770 -15 306 287 37 37 chr12 89443790 89443898 -54342557 - MIR SINE MIR -154 108 1 241 354 153 14 chr12 89445694 89445838 -54340617 + MIR SINE MIR 8 171 -91 23 33 0 0 chr12 89445899 89445929 -54340526 + AT_rich Low_complexity Low_complexity 1 30 0 287 366 136 14 chr12 89445986 89446472 -54339983 + L2 LINE L2 570 1114 -2200 471 292 15 41 chr12 89447046 89447241 -54339214 - MLT1K LTR MaLR -23 565 376 248 303 81 0 chr12 89448171 89448270 -54338185 + MIR SINE MIR 59 165 -97 26 50 0 0 chr12 89448791 89448831 -54337624 + AT_rich Low_complexity Low_complexity 1 40 0 10315 168 19 16 chr12 89448967 89451952 -54334503 + L1MA8 LINE L1 3291 6281 -10 703 209 13 7 chr12 89452668 89452821 -54333634 - AluSc SINE Alu -20 289 136 518 80 27 0 chr12 89452872 89452947 -54333508 - AluSc SINE Alu -190 119 43 7586 29 0 0 chr12 89454095 89455620 -54330835 + L1PA3 LINE L1 4628 6152 -3 280 371 99 0 chr12 89455869 89456020 -54330435 + L2 LINE L2 3107 3272 0 354 296 19 0 chr12 89457075 89457183 -54329272 + MIR SINE MIR 68 177 -85 201 294 25 76 chr12 89457280 89457399 -54329056 + MIR SINE MIR 74 186 -76 26 0 0 0 chr12 89457434 89457460 -54328995 + AT_rich Low_complexity Low_complexity 1 26 0 1959 117 9 44 chr12 89457836 89458152 -54328303 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr12 89458455 89458484 -54327971 + AT_rich Low_complexity Low_complexity 1 29 0 747 338 21 11 chr12 89459297 89459584 -54326871 - MLT1I LTR MaLR -22 387 98 180 289 0 0 chr12 89459812 89459850 -54326605 - L2 LINE L2 -11 3261 3224 27 49 0 0 chr12 89460093 89460134 -54326321 + AT_rich Low_complexity Low_complexity 1 41 0 514 244 30 15 chr12 89460211 89460342 -54326113 + MER63 DNA MER1_type 2 760 -76 252 348 80 9 chr12 89460948 89461060 -54325395 + MIR3 SINE MIR 86 205 -3 184 209 209 35 chr12 89461368 89461454 -54325001 + MIR SINE MIR 70 170 -92 665 183 177 17 chr12 89461522 89461697 -54324758 - MER3 DNA MER1_type -5 204 2 542 287 125 9 chr12 89462876 89463092 -54323363 + MIR SINE MIR 2 242 -20 26 98 0 0 chr12 89463596 89463678 -54322777 + AT_rich Low_complexity Low_complexity 1 82 0 883 288 265 15 chr12 89463683 89464287 -54322168 - LTR50 LTR ERVL 0 795 41 384 281 9 9 chr12 89464396 89464510 -54321945 - MER81 DNA DNA 0 114 1 262 331 132 8 chr12 89465915 89466036 -54320419 - MIR3 SINE MIR -41 167 32 257 341 0 0 chr12 89466535 89466620 -54319835 + MIR SINE MIR 61 145 -63 598 316 69 10 chr12 89468398 89468689 -54317766 - MLT1H LTR MaLR -230 319 12 22 35 0 0 chr12 89469508 89469537 -54316918 + AT_rich Low_complexity Low_complexity 1 29 0 347 266 0 0 chr12 89469635 89469714 -54316741 + L2 LINE L2 3175 3253 -19 33 0 0 0 chr12 89470381 89470414 -54316041 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 89470672 89470693 -54315762 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 89470751 89470780 -54315675 + AT_rich Low_complexity Low_complexity 1 29 0 40 59 0 0 chr12 89471479 89471547 -54314908 + AT_rich Low_complexity Low_complexity 1 68 0 435 354 25 55 chr12 89471691 89472092 -54314363 - MLT1K LTR MaLR -4 584 196 2579 43 0 3 chr12 89472684 89472989 -54313466 + AluY SINE Alu 1 304 -7 241 417 28 19 chr12 89473004 89473215 -54313240 - L2 LINE L2 -277 3036 2824 357 319 17 9 chr12 89473372 89473488 -54312967 + MIR SINE MIR 116 232 -30 5882 166 20 25 chr12 89473488 89474472 -54311983 + Tigger1 DNA MER2_type 1 981 -1437 2102 116 3 13 chr12 89474472 89474773 -54311682 + AluSq SINE Alu 1 298 -15 5882 166 20 25 chr12 89474773 89474881 -54311574 + Tigger1 DNA MER2_type 981 1088 -1330 5858 33 3 0 chr12 89474882 89475585 -54310870 - L1PA4 LINE L1 -1 6154 5450 2100 39 19 0 chr12 89475585 89475922 -54310533 + L1PA4 LINE L1 5119 5460 -695 7375 168 24 3 chr12 89475922 89477241 -54309214 + Tigger1 DNA MER2_type 1071 2417 -1 243 255 0 59 chr12 89477712 89477814 -54308641 - L1MC4 LINE L1 -1333 6709 6614 189 274 0 0 chr12 89477820 89477904 -54308551 + (TA)n Simple_repeat Simple_repeat 2 85 0 325 272 0 22 chr12 89477912 89478004 -54308451 - L1MC4 LINE L1 -1339 6703 6614 360 214 34 22 chr12 89478013 89478102 -54308353 - L1MC4 LINE L1 -1340 6702 6613 332 250 0 52 chr12 89478124 89478220 -54308235 - L1MC4 LINE L1 -1339 6703 6613 360 267 11 0 chr12 89478257 89478347 -54308108 - L1MC4 LINE L1 -1339 6703 6613 378 237 0 21 chr12 89478370 89478463 -54307992 - L1MC4 LINE L1 -1339 6703 6613 306 138 0 0 chr12 89478464 89478522 -54307933 + (TA)n Simple_repeat Simple_repeat 2 59 0 848 223 0 17 chr12 89478522 89478697 -54307758 + Tigger1 DNA MER2_type 2022 2193 -225 204 125 0 0 chr12 89478707 89478739 -54307716 + (TATG)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr12 89479127 89479155 -54307300 + AT_rich Low_complexity Low_complexity 1 28 0 627 282 57 33 chr12 89479216 89479461 -54306994 - MIR SINE MIR -10 252 2 2483 107 3 27 chr12 89479584 89479957 -54306498 + THE1B LTR MaLR 1 364 0 2438 120 19 0 chr12 89480109 89480477 -54305978 + THE1C LTR MaLR 1 375 0 2254 96 18 21 chr12 89483249 89483584 -54302871 + L1PA11 LINE L1 5839 6172 -2 1509 178 7 35 chr12 89483598 89483885 -54302570 - AluJo SINE Alu -33 279 1 22 35 0 0 chr12 89484280 89484309 -54302146 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 89484407 89484433 -54302022 + AT_rich Low_complexity Low_complexity 1 26 0 1977 84 0 0 chr12 89485306 89485580 -54300875 - L1PA13 LINE L1 0 6163 5890 853 20 0 0 chr12 89485653 89485752 -54300703 + L1PA3 LINE L1 6054 6152 -3 205 152 43 0 chr12 89485755 89485801 -54300654 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2114 180 0 5 chr12 89486120 89486487 -54299968 + MLT1A1 LTR MaLR 1 365 0 2137 95 0 26 chr12 89488057 89488363 -54298092 - AluSp SINE Alu -15 298 1 306 0 0 0 chr12 89490137 89490171 -54296284 + (CA)n Simple_repeat Simple_repeat 1 34 0 1039 293 122 41 chr12 89490958 89491788 -54294667 - L2 LINE L2 -16 3297 2403 327 25 0 0 chr12 89492171 89492211 -54294244 + (GA)n Simple_repeat Simple_repeat 1 40 0 252 86 0 0 chr12 89492811 89492846 -54293609 + (TG)n Simple_repeat Simple_repeat 2 36 0 284 203 21 182 chr12 89492929 89493072 -54293383 - L1ME3 LINE L1 -81 6081 5962 23 0 0 0 chr12 89495492 89495515 -54290940 + AT_rich Low_complexity Low_complexity 1 23 0 1965 223 41 14 chr12 89495639 89496146 -54290309 - L1ME1 LINE L1 -5 6230 5710 2023 257 132 50 chr12 89496159 89496753 -54289702 - L1ME1 LINE L1 -1314 4901 4357 2046 127 26 81 chr12 89496753 89497138 -54289317 - THE1B LTR MaLR 0 364 1 2023 257 132 50 chr12 89497138 89497895 -54288560 - L1ME1 LINE L1 -1858 4357 3439 2029 154 0 0 chr12 89498472 89498778 -54287677 - AluSx SINE Alu -4 308 3 281 283 226 19 chr12 89499005 89499164 -54287291 + MIR SINE MIR 54 245 -17 186 103 0 0 chr12 89499224 89499253 -54287202 + (TTC)n Simple_repeat Simple_repeat 2 30 0 699 250 36 10 chr12 89499256 89499448 -54287007 + MER58C DNA MER1_type 2 198 -17 28 29 0 0 chr12 89499477 89499512 -54286943 + AT_rich Low_complexity Low_complexity 1 35 0 1712 247 140 14 chr12 89499991 89500541 -54285914 + MLT1E3 LTR MaLR 6 624 0 467 345 26 5 chr12 89501223 89501422 -54285033 - MIR SINE MIR -40 222 8 1226 284 93 40 chr12 89501694 89503109 -54283346 - L1ME1 LINE L1 -3302 2913 1458 35 88 0 0 chr12 89503285 89503376 -54283079 + AT_rich Low_complexity Low_complexity 1 91 0 332 137 27 0 chr12 89503490 89503563 -54282892 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 272 253 0 27 chr12 89503785 89503860 -54282595 + L2 LINE L2 3239 3311 -2 225 191 0 0 chr12 89504927 89504974 -54281481 + T-rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr12 89505647 89505670 -54280785 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 89506698 89506727 -54279728 + AT_rich Low_complexity Low_complexity 1 29 0 396 234 44 101 chr12 89508175 89508333 -54278122 - MIR SINE MIR -7 255 107 23 0 0 0 chr12 89508337 89508360 -54278095 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 89508369 89508397 -54278058 + AT_rich Low_complexity Low_complexity 1 28 0 841 287 111 7 chr12 89509099 89509406 -54277049 + LTR16A LTR ERVL 107 445 -5 1385 75 0 0 chr12 89509971 89510145 -54276310 - AluSc SINE Alu -4 305 132 452 169 0 0 chr12 89710146 89710217 -54076238 + MER41D LTR ERV1 487 557 0 23 33 0 0 chr12 89710505 89710535 -54075920 + AT_rich Low_complexity Low_complexity 1 30 0 201 94 0 0 chr12 89710828 89710860 -54075595 + (CA)n Simple_repeat Simple_repeat 1 32 0 378 175 0 0 chr12 89711023 89711086 -54075369 + MER93a LTR ERV1 1 63 -339 354 102 17 0 chr12 89711083 89711142 -54075313 + MER93b LTR ERV1 314 373 0 * 24 0 0 0 chr12 89712359 89712383 -54074072 + AT_rich Low_complexity Low_complexity 1 24 0 2361 60 7 3 chr12 89712765 89713066 -54073389 - AluY SINE Alu -9 302 1 880 275 0 18 chr12 89713264 89713486 -54072969 - MLT1E LTR MaLR 0 593 376 944 308 131 52 chr12 89713697 89714176 -54072279 - L2 LINE L2 0 3313 2737 2370 76 7 0 chr12 89714176 89714480 -54071975 + AluSc SINE Alu 1 306 -3 944 308 131 52 chr12 89714480 89714775 -54071680 - L2 LINE L2 -576 2737 2467 2009 122 47 39 chr12 89714845 89715206 -54071249 - THE1B LTR MaLR 0 364 1 36 23 0 0 chr12 89715210 89715253 -54071202 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 89715615 89715637 -54070818 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 89715942 89715970 -54070485 + AT_rich Low_complexity Low_complexity 1 28 0 311 185 12 49 chr12 89716267 89716348 -54070107 - MLT1K LTR MaLR -2 586 509 194 323 52 83 chr12 89716859 89717088 -54069367 - L2 LINE L2 -337 2977 2756 544 304 31 58 chr12 89718053 89718313 -54068142 - MIR SINE MIR 0 262 10 239 206 32 48 chr12 89720396 89720459 -54065996 - MLT1K LTR MaLR -2 586 525 2320 83 0 0 chr12 89720558 89720858 -54065597 + AluSx SINE Alu 1 300 -12 336 350 89 11 chr12 89721034 89721214 -54065241 + MLT1K LTR MaLR 129 322 -266 28 0 0 0 chr12 89722546 89722574 -54063881 + AT_rich Low_complexity Low_complexity 1 28 0 1239 175 0 5 chr12 89722671 89722877 -54063578 - AluSx SINE Alu -92 220 16 265 262 8 8 chr12 89722956 89723078 -54063377 + CT-rich Low_complexity Low_complexity 1 122 0 646 274 6 6 chr12 89723464 89723628 -54062827 + MER63A DNA MER1_type 46 209 -1 223 399 51 6 chr12 89724213 89724391 -54062064 + MER5A DNA MER1_type 3 188 -1 586 62 0 0 chr12 89724437 89724517 -54061938 - L1PA5 LINE L1 -4 6150 6071 2124 92 0 0 chr12 89724634 89724941 -54061514 + AluY SINE Alu 1 307 0 24 0 0 0 chr12 89724941 89724965 -54061490 + AT_rich Low_complexity Low_complexity 1 24 0 314 352 28 0 chr12 89725067 89725212 -54061243 + MLT1J LTR MaLR 313 461 -50 2240 93 7 0 chr12 89725407 89725697 -54060758 - AluSc SINE Alu -17 292 1 339 266 93 72 chr12 89727883 89728120 -54058335 + L2 LINE L2 2143 2384 -930 1067 117 6 0 chr12 89728134 89728305 -54058150 + (TCTCC)n Simple_repeat Simple_repeat 3 174 0 1335 183 70 36 chr12 89728308 89728609 -54057846 - AluJo SINE Alu -1 311 1 2224 107 0 0 chr12 89729626 89729924 -54056531 + AluSg SINE Alu 1 298 -12 2050 136 123 28 chr12 89731029 89731420 -54055035 - MSTA LTR MaLR 0 428 1 8559 185 21 7 chr12 89731420 89731596 -54054859 - MSTA-int LTR MaLR 0 1651 1479 207 88 0 0 chr12 89731596 89731630 -54054825 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8559 185 21 7 chr12 89731630 89733081 -54053374 - MSTA-int LTR MaLR -172 1479 1 2053 148 122 8 chr12 89733081 89733465 -54052990 - MSTA LTR MaLR 0 428 1 22 80 0 0 chr12 89734186 89734236 -54052219 + AT_rich Low_complexity Low_complexity 1 50 0 2495 174 155 110 chr12 89735521 89736092 -54050363 - L1MC3 LINE L1 0 7785 7064 237 297 11 11 chr12 89736092 89736183 -54050272 - MLT1F1 LTR MaLR -442 125 35 2495 174 155 110 chr12 89736183 89736496 -54049959 - L1MC3 LINE L1 -721 7064 6767 208 372 138 21 chr12 89737048 89737193 -54049262 - MIR3 SINE MIR -31 177 16 34 55 0 0 chr12 89737343 89737398 -54049057 + AT_rich Low_complexity Low_complexity 1 55 0 264 279 11 6 chr12 89738152 89738331 -54048124 + (TA)n Simple_repeat Simple_repeat 1 180 0 775 262 60 55 chr12 89738363 89738748 -54047707 - L1MEc LINE L1 -4120 2276 1890 22 70 0 0 chr12 89739018 89739061 -54047394 + AT_rich Low_complexity Low_complexity 1 43 0 338 340 14 21 chr12 89739251 89739395 -54047060 - MIR SINE MIR -26 236 94 23 0 0 0 chr12 89740207 89740230 -54046225 + AT_rich Low_complexity Low_complexity 1 23 0 1237 192 102 0 chr12 89741256 89741511 -54044944 + AluJb SINE Alu 1 281 -31 284 48 24 0 chr12 89741514 89741556 -54044899 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 553 309 33 0 chr12 89741993 89742145 -54044310 - MER21B LTR ERV1 -126 737 581 23 0 0 0 chr12 89742531 89742554 -54043901 + AT_rich Low_complexity Low_complexity 1 23 0 216 356 87 10 chr12 89743023 89743127 -54043328 - L2 LINE L2 -1 3312 3201 * 363 349 7 27 chr12 89743116 89743262 -54043193 + MER5B DNA MER1_type 36 178 0 6229 105 32 52 chr12 89743390 89743427 -54043028 - L1MA1 LINE L1 0 6302 6266 189 0 0 0 chr12 89743427 89743448 -54043007 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6229 105 32 52 chr12 89743448 89744197 -54042258 - L1MA1 LINE L1 -36 6266 5542 2111 115 6 16 chr12 89744197 89744509 -54041946 - AluSc SINE Alu 0 309 1 6229 105 32 52 chr12 89744509 89744811 -54041644 - L1MA1 LINE L1 -760 5542 5235 3968 131 20 29 chr12 89744817 89745468 -54040987 + THE1B-int LTR MaLR 931 1575 -5 2143 139 8 32 chr12 89745473 89745846 -54040609 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr12 89747008 89747032 -54039423 + AT_rich Low_complexity Low_complexity 1 24 0 770 332 69 69 chr12 89748027 89748853 -54037602 - HAL1 LINE L1 0 2507 1682 226 289 31 21 chr12 89748881 89748978 -54037477 + LTR37B LTR ERV1 6 103 -365 256 187 116 143 chr12 89749058 89749254 -54037201 + LTR37B LTR ERV1 112 312 -156 420 20 0 0 chr12 89749254 89749303 -54037152 + (TA)n Simple_repeat Simple_repeat 1 49 0 256 187 116 143 chr12 89749303 89749336 -54037119 + LTR37B LTR ERV1 312 344 -124 722 211 0 0 chr12 89749336 89749469 -54036986 - FLAM_C SINE Alu 0 133 1 256 187 116 143 chr12 89749469 89749555 -54036900 + LTR37B LTR ERV1 344 466 -2 319 313 189 7 chr12 89749568 89749849 -54036606 - HAL1 LINE L1 -861 1646 1315 265 370 44 0 chr12 89750491 89750626 -54035829 + MIR SINE MIR 46 186 -76 343 213 184 21 chr12 89751612 89751753 -54034702 - L1ME4a LINE L1 -165 5956 5793 617 318 123 17 chr12 89752174 89752523 -54033932 + MLT1J LTR MaLR 71 456 -55 40 59 0 0 chr12 89752658 89752726 -54033729 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr12 89752890 89752912 -54033543 + AT_rich Low_complexity Low_complexity 1 22 0 1768 219 72 16 chr12 89753348 89753790 -54032665 + MLT1C LTR MaLR 1 467 0 3464 166 7 23 chr12 89753867 89754311 -54032144 + LTR26 LTR ERV1 1 434 -169 1534 176 157 83 chr12 89754311 89754827 -54031628 - MLT2B3 LTR ERVL 0 554 1 3464 166 7 23 chr12 89754827 89754995 -54031460 + LTR26 LTR ERV1 434 603 0 31 0 0 0 chr12 89755023 89755054 -54031401 + AT_rich Low_complexity Low_complexity 1 31 0 943 258 65 14 chr12 89755666 89755941 -54030514 + MLT2D LTR ERVL 1 289 -125 1286 240 33 36 chr12 89755983 89756346 -54030109 + MLT1A2 LTR MaLR 2 363 -11 762 239 0 53 chr12 89756359 89756547 -54029908 + MLT2D LTR ERVL 229 406 -8 1843 162 7 7 chr12 89756849 89757158 -54029297 - AluSx SINE Alu -3 309 1 182 37 37 0 chr12 89757969 89757996 -54028459 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 719 268 48 125 chr12 89758818 89759251 -54027204 + MLT1E LTR MaLR 1 400 -193 2031 82 0 0 chr12 89759253 89759522 -54026933 + AluY SINE Alu 25 293 -18 22 0 0 0 chr12 89759525 89759547 -54026908 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr12 89759602 89759657 -54026798 + AT_rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr12 89759733 89759772 -54026683 + AT_rich Low_complexity Low_complexity 1 39 0 210 233 0 0 chr12 89760469 89760529 -54025926 + (TA)n Simple_repeat Simple_repeat 1 60 0 185 345 0 0 chr12 89760694 89760749 -54025706 + L2 LINE L2 2595 2649 -665 249 286 71 0 chr12 89761316 89761400 -54025055 - MIR SINE MIR -59 203 114 1233 171 5 14 chr12 89761523 89761739 -54024716 + MER20 DNA MER1_type 2 215 -4 558 307 99 18 chr12 89762268 89762610 -54023845 - HsTC2 DNA Tc2 -1038 860 491 2001 128 0 0 chr12 89763226 89763550 -54022905 + AluSx SINE Alu 1 324 0 23 0 0 0 chr12 89764213 89764236 -54022219 + AT_rich Low_complexity Low_complexity 1 23 0 342 0 0 0 chr12 89764465 89764503 -54021952 + (TG)n Simple_repeat Simple_repeat 1 38 0 514 299 93 22 chr12 89764691 89764959 -54021496 + HsTC2 DNA Tc2 491 777 -1121 265 267 25 0 chr12 89764998 89765118 -54021337 + (TA)n Simple_repeat Simple_repeat 2 124 0 344 308 35 21 chr12 89765944 89766087 -54020368 + MLT1H LTR MaLR 392 536 -13 489 17 0 0 chr12 89766092 89766150 -54020305 + (TG)n Simple_repeat Simple_repeat 2 59 0 443 294 174 23 chr12 89767369 89767587 -54018868 - MIR SINE MIR 0 262 12 911 254 20 44 chr12 89768146 89768441 -54018014 + L1M4 LINE L1 61 348 -6194 790 207 40 59 chr12 89768448 89768689 -54017766 + MLT1A1 LTR MaLR 8 256 -118 687 304 20 0 chr12 89768694 89768898 -54017557 + L1M4 LINE L1 598 805 -5737 2003 160 42 22 chr12 89768925 89769282 -54017173 + THE1B LTR MaLR 1 364 0 10411 119 13 3 chr12 89769284 89770847 -54015608 + THE1B-int LTR MaLR 3 1580 0 2041 150 42 28 chr12 89770847 89771206 -54015249 + THE1B LTR MaLR 1 364 0 2578 239 92 38 chr12 89771207 89772537 -54013918 + L1M4 LINE L1 829 2434 -4210 1605 235 28 0 chr12 89772537 89772890 -54013565 + MLT1A1 LTR MaLR 1 363 -2 2578 239 92 38 chr12 89772890 89773724 -54012731 + L1M4 LINE L1 2434 3221 -3423 431 228 190 17 chr12 89774378 89774561 -54011894 - MIR SINE MIR -13 249 38 1082 329 50 17 chr12 89774900 89775365 -54011090 - LTR16C LTR ERVL 0 491 12 201 368 11 11 chr12 89776664 89776740 -54009715 + L2 LINE L2 2685 2760 -554 380 346 46 26 chr12 89776740 89776991 -54009464 + MIR SINE MIR 1 259 -3 217 311 76 8 chr12 89777564 89777683 -54008772 - L3 LINE CR1 -169 1408 1282 622 288 68 10 chr12 89777923 89778128 -54008327 + MER20 DNA MER1_type 2 218 -1 1888 102 8 4 chr12 89778433 89778699 -54007756 - HSMAR1 DNA Mariner -1 1286 1020 764 93 17 8 chr12 89778699 89778867 -54007588 + AluSg/x SINE Alu 175 312 0 7064 116 13 9 chr12 89778867 89779893 -54006562 - HSMAR1 DNA Mariner -257 1030 1 1597 160 66 34 chr12 89780269 89780619 -54005836 - MER4B LTR ERV1 -249 361 1 1271 236 34 0 chr12 89780619 89780912 -54005543 + MLT1B LTR MaLR 88 390 0 326 321 0 0 chr12 89781084 89781190 -54005265 - L1ME1 LINE L1 -55 6111 6006 1797 204 32 32 chr12 89781191 89781598 -54004857 + MSTB LTR MaLR 1 407 -19 2306 133 14 3 chr12 89781837 89782197 -54004258 - THE1B LTR MaLR 0 364 1 183 188 29 29 chr12 89782475 89782544 -54003911 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 185 350 98 22 chr12 89782590 89782773 -54003682 - MIR SINE MIR -46 216 20 1105 193 71 17 chr12 89782982 89783221 -54003234 - MER21A LTR ERV1 -667 264 13 319 264 0 47 chr12 89783221 89783327 -54003128 - L1MC4 LINE L1 -1339 6703 6603 3879 243 89 18 chr12 89783680 89784728 -54001727 + Charlie1a DNA MER1_type 2 1153 -1608 1827 130 34 62 chr12 89784728 89785112 -54001343 - THE1C LTR MaLR -2 373 1 3879 243 89 18 chr12 89785112 89785297 -54001158 + Charlie1a DNA MER1_type 1153 1323 -132 1600 299 91 44 chr12 89785509 89786756 -53999699 - L2 LINE L2 -1 3312 2005 189 0 0 0 chr12 89786756 89786777 -53999678 + (A)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr12 89786783 89786819 -53999636 + AT_rich Low_complexity Low_complexity 1 36 0 263 258 15 15 chr12 89787095 89787161 -53999294 - L2 LINE L2 -52 3261 3196 1071 161 0 32 chr12 89787203 89787420 -53999035 - L1MA9 LINE L1 0 6312 6103 2557 56 0 0 chr12 89787458 89787762 -53998693 + AluY SINE Alu 1 304 -7 530 351 36 24 chr12 89787766 89788017 -53998438 - L2 LINE L2 -1352 1962 1709 38 39 0 0 chr12 89788024 89788076 -53998379 + AT_rich Low_complexity Low_complexity 1 52 0 282 253 11 21 chr12 89788076 89788171 -53998284 - L2 LINE L2 -1603 1711 1618 513 248 45 69 chr12 89788277 89788479 -53997976 + MIR SINE MIR 36 232 -30 390 322 120 0 chr12 89788670 89788853 -53997602 + MIR SINE MIR 56 260 -2 297 360 64 0 chr12 89790013 89790185 -53996270 + MIR SINE MIR 79 261 -1 878 185 64 6 chr12 89790418 89790591 -53995864 + MER20 DNA MER1_type 37 219 0 326 300 194 11 chr12 89790967 89791147 -53995308 - MIR SINE MIR -2 260 48 250 184 26 0 chr12 89791207 89791283 -53995172 + (TA)n Simple_repeat Simple_repeat 2 79 0 353 321 189 17 chr12 89793299 89793648 -53992807 + L1M4 LINE L1 4075 4483 -1663 1739 179 28 0 chr12 89793678 89793968 -53992487 - AluJo SINE Alu -13 299 2 253 313 70 9 chr12 89794567 89794682 -53991773 + MER69 DNA AcHobo 377 498 -728 * 576 250 72 0 chr12 89794673 89794825 -53991630 + MER69 DNA AcHobo 673 835 -391 2711 263 64 59 chr12 89794870 89795944 -53990511 + MER69 DNA AcHobo 186 1265 -1261 634 220 58 0 chr12 89795959 89796150 -53990305 + MER69 DNA AcHobo 2135 2336 -190 1403 294 87 45 chr12 89796522 89797290 -53989165 + L2 LINE L2 2493 3305 -8 1471 223 3 10 chr12 89797843 89798157 -53988298 - AluJo SINE Alu 0 312 1 192 309 0 36 chr12 89800090 89800174 -53986281 + L3 LINE CR1 412 492 -1085 * 707 274 64 1 chr12 89800166 89800390 -53986065 + MIR SINE MIR 8 237 -25 362 329 112 40 chr12 89800490 89800891 -53985564 + L3 LINE CR1 642 1071 -506 214 314 136 7 chr12 89800921 89801061 -53985394 + L3 LINE CR1 1160 1317 -260 2326 53 0 13 chr12 89801061 89801362 -53985093 - AluY SINE Alu -13 298 2 328 353 0 29 chr12 89801448 89801584 -53984871 + MLT1K LTR MaLR 26 157 -431 1057 251 74 63 chr12 89801861 89802336 -53984119 - L1MD2 LINE L1 -1 6358 5879 1823 285 93 29 chr12 89802730 89803842 -53982613 + L1ME2 LINE L1 3446 4628 -1518 1215 236 47 60 chr12 89803859 89804346 -53982109 + L1ME2 LINE L1 4798 5278 -868 1503 200 10 13 chr12 89804375 89804675 -53981780 + AluJb SINE Alu 1 299 -13 5664 135 54 15 chr12 89804686 89805016 -53981439 + Tigger3b DNA MER2_type 1 317 -2711 2400 81 0 3 chr12 89805016 89805323 -53981132 + AluY SINE Alu 1 306 -5 5664 135 54 15 chr12 89805323 89806028 -53980427 + Tigger3b DNA MER2_type 317 1076 -155 3570 111 26 10 chr12 89806028 89806603 -53979852 - LTR10C LTR ERV1 0 529 1 539 204 30 87 chr12 89806862 89807114 -53979341 - MER61D LTR ERV1 -4 750 340 821 257 6 6 chr12 89807148 89807327 -53979128 - LTR28 LTR ERV1 -841 179 1 1093 124 0 0 chr12 89807328 89807481 -53978974 + Tigger3b DNA MER2_type 1088 1240 -1 1298 240 153 14 chr12 89807499 89808003 -53978452 + L1ME2 LINE L1 5270 5843 -321 1350 233 40 44 chr12 89808003 89808453 -53978002 - MER39 LTR ERV1 0 707 260 255 361 0 0 chr12 89808431 89808528 -53977927 - LTR48B LTR ERV1 -547 97 1 * 815 232 113 34 chr12 89808528 89808821 -53977634 + L1ME2 LINE L1 5840 6155 -9 29 84 0 0 chr12 89809596 89809667 -53976788 + AT_rich Low_complexity Low_complexity 1 71 0 26 64 0 0 chr12 89810105 89810152 -53976303 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr12 89811478 89811508 -53974947 + AT_rich Low_complexity Low_complexity 1 30 0 435 19 0 0 chr12 89811880 89811932 -53974523 + (TG)n Simple_repeat Simple_repeat 2 53 0 200 183 67 17 chr12 89812179 89812239 -53974216 + CT-rich Low_complexity Low_complexity 4 66 0 2110 164 9 30 chr12 89812577 89812647 -53973808 - L1MA9 LINE L1 0 6312 6242 240 35 0 0 chr12 89812647 89812676 -53973779 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2239 92 0 0 chr12 89812676 89812958 -53973497 - AluY SINE Alu -29 282 1 2110 164 9 30 chr12 89812958 89813319 -53973136 - L1MA9 LINE L1 -68 6244 5889 5348 152 8 23 chr12 89813322 89814193 -53972262 + THE1C-int LTR MaLR 723 1580 0 1688 151 50 56 chr12 89814193 89814570 -53971885 + THE1C LTR MaLR 1 375 0 1706 135 44 66 chr12 89815596 89815915 -53970540 + AluSx SINE Alu 1 312 0 267 304 20 101 chr12 89817610 89817758 -53968697 - MER91A DNA MER1_type -43 153 18 577 68 11 11 chr12 89818213 89818301 -53968154 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 2547 62 0 0 chr12 89818533 89818839 -53967616 - AluY SINE Alu -5 306 1 209 213 0 0 chr12 89818889 89818936 -53967519 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2472 62 3 0 chr12 89819497 89819801 -53966654 + AluY SINE Alu 1 305 -6 1822 227 30 22 chr12 89820159 89820621 -53965834 - MLT1C LTR MaLR -1 466 1 290 318 45 0 chr12 89820801 89820911 -53965544 + L2 LINE L2 3195 3309 -4 332 287 0 62 chr12 89821201 89821330 -53965125 - L1ME4a LINE L1 -20 6101 5981 295 271 14 0 chr12 89821616 89821736 -53964719 - L1ME4a LINE L1 -401 5720 5599 1252 187 37 10 chr12 89822706 89823000 -53963455 + L1MA7 LINE L1 5988 6289 -2 33 25 0 0 chr12 89823092 89823132 -53963323 + AT_rich Low_complexity Low_complexity 1 40 0 2592 162 7 2 chr12 89823769 89824195 -53962260 + MSTA LTR MaLR 1 428 0 5218 128 19 26 chr12 89824280 89825328 -53961127 + L1PA16 LINE L1 5119 6156 -10 1999 151 73 14 chr12 89826613 89826957 -53959498 - THE1B LTR MaLR 0 364 1 11107 102 7 23 chr12 89826957 89828046 -53958409 - THE1B-int LTR MaLR 0 1580 475 2079 102 0 27 chr12 89828046 89828340 -53958115 + AluY SINE Alu 23 308 -3 11107 102 7 23 chr12 89828340 89828478 -53957977 - THE1B-int LTR MaLR -1105 475 336 2087 106 4 0 chr12 89828478 89828751 -53957704 + AluSc SINE Alu 1 274 -35 11107 102 7 23 chr12 89828751 89829127 -53957328 - THE1B-int LTR MaLR -1244 336 2 1968 136 115 15 chr12 89829128 89829459 -53956996 - THE1B LTR MaLR 0 364 1 1672 215 46 0 chr12 89829584 89829933 -53956522 + MLT1A1 LTR MaLR 1 365 0 22 70 0 0 chr12 89830681 89830724 -53955731 + AT_rich Low_complexity Low_complexity 1 43 0 2326 73 0 13 chr12 89831545 89831845 -53954610 - AluY SINE Alu -15 296 1 411 21 0 0 chr12 89832067 89832115 -53954340 + (CA)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr12 89832922 89832946 -53953509 + AT_rich Low_complexity Low_complexity 1 24 0 17385 185 35 13 chr12 89832948 89837122 -53949333 + L1P4 LINE L1 1 4712 -2887 333 0 0 0 chr12 89837122 89837159 -53949296 + (CA)n Simple_repeat Simple_repeat 2 38 0 17385 185 35 13 chr12 89837159 89839413 -53947042 + L1P4 LINE L1 4712 6915 -684 315 0 0 0 chr12 89839424 89839459 -53946996 + (CA)n Simple_repeat Simple_repeat 1 35 0 31 82 0 0 chr12 89839637 89839710 -53946745 + AT_rich Low_complexity Low_complexity 1 73 0 447 72 145 0 chr12 89840490 89840559 -53945896 + MADE1 DNA Mariner 1 79 -1 198 0 0 0 chr12 89840616 89840638 -53945817 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 89840910 89840932 -53945523 + AT_rich Low_complexity Low_complexity 1 22 0 313 391 45 0 chr12 89843348 89843458 -53942997 + L2 LINE L2 3121 3235 -37 847 182 0 0 chr12 89843935 89844067 -53942388 + FLAM_C SINE Alu 1 132 -1 275 322 192 8 chr12 89844072 89844317 -53942138 + L3 LINE CR1 484 773 -804 2010 174 76 2 chr12 89844897 89845304 -53941151 + LTR23 LTR ERV1 1 437 0 1403 218 73 123 chr12 89845477 89846248 -53940207 - LTR8A LTR ERV1 -10 678 1 189 389 28 42 chr12 89846351 89846567 -53939888 + L2 LINE L2 479 691 -2623 2537 149 38 9 chr12 89848070 89848492 -53937963 + MER57B LTR ERV1 1 434 0 377 245 138 8 chr12 89849549 89849789 -53936666 + LTR37A LTR ERV1 199 423 -3 4402 186 63 20 chr12 89851460 89852942 -53933513 + L1MA10 LINE L1 4788 6334 0 180 331 39 51 chr12 89853121 89853299 -53933156 - L2 LINE L2 -520 2794 2619 22 0 0 0 chr12 89853455 89853477 -53932978 + AT_rich Low_complexity Low_complexity 1 22 0 417 244 228 25 chr12 89854018 89854215 -53932240 - MIR SINE MIR -12 250 14 883 330 86 38 chr12 89855729 89856300 -53930155 + L3 LINE CR1 772 1383 -194 2220 120 3 0 chr12 89856300 89856608 -53929847 - AluSp SINE Alu -4 309 1 883 330 86 38 chr12 89856608 89856723 -53929732 + L3 LINE CR1 1383 1491 -86 384 228 105 18 chr12 89856805 89856919 -53929536 - MER63 DNA MER1_type -86 750 1 1076 70 0 0 chr12 89857014 89857143 -53929312 - AluY SINE Alu -182 129 1 2154 123 0 7 chr12 89857320 89857620 -53928835 - AluSx SINE Alu -14 298 1 22 0 0 0 chr12 89858391 89858413 -53928042 + AT_rich Low_complexity Low_complexity 1 22 0 39 31 0 16 chr12 89858758 89858795 -53927660 + AT_rich Low_complexity Low_complexity 1 38 -25 4628 65 2 3 chr12 89858795 89859393 -53927062 + L1PA7 LINE L1 5558 6154 0 39 31 0 16 chr12 89859393 89859419 -53927036 + AT_rich Low_complexity Low_complexity 38 63 0 221 236 9 0 chr12 89859481 89859587 -53926868 + (TA)n Simple_repeat Simple_repeat 2 108 0 264 271 8 90 chr12 89859712 89859845 -53926610 - L2 LINE L2 -91 3222 3101 * 543 289 191 29 chr12 89859819 89860092 -53926363 - L2 LINE L2 -640 2674 2358 26 74 0 0 chr12 89860504 89860558 -53925897 + AT_rich Low_complexity Low_complexity 1 54 0 1645 184 0 39 chr12 89860613 89860922 -53925533 + AluJb SINE Alu 1 297 -15 472 268 30 0 chr12 89861909 89862047 -53924408 - MER63A DNA MER1_type -28 182 36 896 234 5 28 chr12 89862184 89862398 -53924057 + MER3 DNA MER1_type 1 209 0 528 310 109 4 chr12 89862908 89863137 -53923318 + MIR SINE MIR 2 254 -8 426 296 151 48 chr12 89863633 89864005 -53922450 - MLT1K LTR MaLR -28 560 151 784 304 66 104 chr12 89864501 89864639 -53921816 - HAL1 LINE L1 -1004 1503 1361 198 0 0 0 chr12 89864639 89864661 -53921794 + (TTG)n Simple_repeat Simple_repeat 2 23 0 784 304 66 104 chr12 89864661 89865892 -53920563 - HAL1 LINE L1 -1146 1361 186 339 294 118 0 chr12 89865997 89866133 -53920322 - LTR50 LTR ERVL -171 624 473 1615 221 27 64 chr12 89866214 89866700 -53919755 - MER31B LTR ERV1 0 543 1 344 213 151 44 chr12 89866713 89866849 -53919606 - LTR50 LTR ERVL -375 159 24 279 260 125 19 chr12 89867048 89867152 -53919303 + MIR SINE MIR 110 224 -38 882 219 18 93 chr12 89867277 89867556 -53918899 - MIR SINE MIR 0 262 5 269 288 146 58 chr12 89867487 89867692 -53918763 + MIR SINE MIR 40 262 0 * 837 254 132 61 chr12 89867873 89867980 -53918475 + MLT2B1 LTR ERVL 1 99 -421 1463 134 57 12 chr12 89867980 89868227 -53918228 - AluSx SINE Alu -54 258 1 837 254 132 61 chr12 89868227 89868529 -53917926 + MLT2B1 LTR ERVL 99 439 -81 198 203 25 13 chr12 89868612 89868691 -53917764 + (TA)n Simple_repeat Simple_repeat 2 81 0 253 186 0 34 chr12 89868694 89868753 -53917702 + MLT2B1 LTR ERVL 464 520 0 340 139 14 14 chr12 89868757 89868829 -53917626 - HAL1 LINE L1 -315 2192 2121 414 57 0 0 chr12 89869265 89869318 -53917137 + (TA)n Simple_repeat Simple_repeat 2 54 0 342 0 0 0 chr12 89869317 89869355 -53917100 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 862 268 44 13 chr12 89870302 89870530 -53915925 + MIR SINE MIR 28 262 0 566 112 131 0 chr12 89870692 89870799 -53915656 - MIR SINE MIR -43 219 99 185 274 110 0 chr12 89870945 89871018 -53915437 + MER5C DNA MER1_type 4 84 -240 243 0 0 0 chr12 89872523 89872550 -53913905 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 432 0 0 0 chr12 89872549 89872597 -53913858 + (GA)n Simple_repeat Simple_repeat 2 49 0 207 150 25 0 chr12 89873044 89873084 -53913371 + L2 LINE L2 3271 3311 -2 1083 329 41 45 chr12 89873113 89873754 -53912701 - L2 LINE L2 -1428 1886 1249 270 290 30 30 chr12 89874161 89874261 -53912194 + LTR48B LTR ERV1 3 102 -542 * 1177 207 115 46 chr12 89874231 89874658 -53911797 + MER39 LTR ERV1 257 542 0 5170 131 20 30 chr12 89874972 89876761 -53909694 + L1PA15 LINE L1 4379 6153 -12 1293 174 110 61 chr12 89878199 89878509 -53907946 + MLT1B LTR MaLR 1 325 -65 2137 109 3 0 chr12 89878509 89878803 -53907652 - AluSx SINE Alu -17 295 1 370 304 52 0 chr12 89879066 89879181 -53907274 + MIR SINE MIR 119 239 -23 1504 244 39 24 chr12 89879340 89879798 -53906657 + MLT1C LTR MaLR 1 465 -2 2572 196 13 15 chr12 89880725 89881137 -53905318 + MER89 LTR ERV1 3 415 -144 495 0 0 0 chr12 89881137 89881192 -53905263 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2572 196 13 15 chr12 89881192 89881311 -53905144 + MER89 LTR ERV1 415 533 -26 24 67 0 0 chr12 89881917 89881962 -53904493 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 89882087 89882108 -53904347 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 133 9 chr12 89882148 89882261 -53904194 + MIR3 SINE MIR 44 170 -38 465 250 9 0 chr12 89882533 89882645 -53903810 + MER3 DNA MER1_type 41 153 -56 999 195 82 4 chr12 89882683 89882950 -53903505 + MER3 DNA MER1_type 2272 2559 0 26 0 0 0 chr12 89883964 89883990 -53902465 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr12 89884490 89884518 -53901937 + AT_rich Low_complexity Low_complexity 1 28 0 181 339 0 0 chr12 89884588 89884650 -53901805 - MIR SINE MIR -62 146 85 495 274 9 0 chr12 89885330 89885436 -53901019 + L2 LINE L2 3202 3308 -5 519 314 153 43 chr12 89885732 89886406 -53900049 - L2 LINE L2 -1256 2058 1311 22 35 0 0 chr12 89887919 89887948 -53898507 + AT_rich Low_complexity Low_complexity 1 29 0 1653 110 0 107 chr12 89888031 89888339 -53898116 - AluSx SINE Alu -1 311 37 342 261 108 45 chr12 89888385 89888496 -53897959 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr12 89888545 89888573 -53897882 + AT_rich Low_complexity Low_complexity 1 28 0 423 276 118 0 chr12 89888896 89889023 -53897432 - MIR SINE MIR -47 215 74 775 233 65 34 chr12 89889118 89889380 -53897075 - L1ME1 LINE L1 -140 6026 5757 401 204 24 152 chr12 89889388 89889448 -53897007 - L1ME1 LINE L1 -535 5631 5565 1909 139 7 4 chr12 89889448 89889766 -53896689 + AluSp SINE Alu 1 319 0 401 204 24 152 chr12 89889766 89889913 -53896542 - L1ME1 LINE L1 -601 5565 5448 * 4984 275 73 22 chr12 89889909 89889990 -53896465 - L1MEc LINE L1 -3444 2771 2696 2191 134 5 50 chr12 89889990 89890371 -53896084 + THE1B LTR MaLR 1 364 0 11080 103 17 1 chr12 89890371 89891926 -53894529 + THE1B-int LTR MaLR 1 1580 0 2229 140 8 30 chr12 89891926 89892298 -53894157 + THE1B LTR MaLR 1 364 0 4984 275 73 22 chr12 89892298 89893342 -53893113 - L1MEc LINE L1 -3519 2696 1707 5874 103 20 6 chr12 89893342 89894799 -53891656 + L1PA13 LINE L1 4687 6161 -2 4984 275 73 22 chr12 89894799 89896262 -53890193 - L1MEc LINE L1 -4508 1707 74 350 340 0 0 chr12 89896561 89896661 -53889794 - MIR SINE MIR -161 101 2 211 268 0 56 chr12 89896678 89896749 -53889706 + L2 LINE L2 2170 2236 -1078 424 162 19 0 chr12 89896974 89897079 -53889376 + (TA)n Simple_repeat Simple_repeat 1 107 0 269 317 146 35 chr12 89897086 89897285 -53889170 - L2 LINE L2 -83 3230 3010 33 43 0 0 chr12 89897888 89897935 -53888520 + AT_rich Low_complexity Low_complexity 1 47 0 1467 201 43 53 chr12 89898135 89898529 -53887926 - MLT1B LTR MaLR 0 390 1 25 51 0 0 chr12 89899153 89899192 -53887263 + AT_rich Low_complexity Low_complexity 1 39 0 338 167 33 0 chr12 89899902 89899962 -53886493 - L2 LINE L2 0 3313 3252 5509 115 19 15 chr12 89900097 89901728 -53884727 - L1PA14 LINE L1 -1 6160 4519 21 0 0 0 chr12 89901838 89901859 -53884596 + AT_rich Low_complexity Low_complexity 1 21 0 1283 185 80 42 chr12 89901863 89902150 -53884305 - AluJo SINE Alu -4 298 1 635 216 0 0 chr12 89903046 89903162 -53883293 - FLAM_A SINE Alu -17 116 1 360 256 58 8 chr12 89903802 89903923 -53882532 + MER94 DNA DNA 5 131 -3 344 285 58 15 chr12 90004659 90004796 -53781659 + MIR SINE MIR 66 208 -54 2327 82 0 28 chr12 90005585 90005904 -53780551 + AluY SINE Alu 1 310 -1 1538 130 4 0 chr12 90006917 90007156 -53779299 + L1PA10 LINE L1 5914 6153 -15 751 297 77 45 chr12 90007214 90007615 -53778840 - L2 LINE L2 -5 3308 2895 3386 161 51 55 chr12 90008055 90008843 -53777612 - LTR1 LTR ERV1 0 785 1 32 43 0 0 chr12 90011177 90011223 -53775232 + AT_rich Low_complexity Low_complexity 1 46 0 32 43 0 0 chr12 90011321 90011367 -53775088 + AT_rich Low_complexity Low_complexity 1 46 0 242 372 0 0 chr12 90011563 90011641 -53774814 - MIR3 SINE MIR -4 204 127 228 351 52 0 chr12 90011804 90011881 -53774574 + MIR SINE MIR 20 100 -162 1554 271 58 44 chr12 90012202 90012929 -53773526 - L1MC4 LINE L1 -141 7901 7165 645 179 0 8 chr12 90013276 90013399 -53773056 + L1MA6 LINE L1 5961 6082 -218 1798 144 18 56 chr12 90013410 90013749 -53772706 - MER1B DNA MER1_type -9 330 5 1079 191 0 0 chr12 90013751 90013966 -53772489 + L1MA6 LINE L1 6071 6285 -15 388 171 95 26 chr12 90014261 90014378 -53772077 - L1MA8 LINE L1 -266 6038 5902 * 700 198 0 13 chr12 90014369 90014526 -53771929 + L1MA7 LINE L1 6132 6286 -5 * 2800 182 12 15 chr12 90014525 90015124 -53771331 + L1MA4 LINE L1 4663 5259 -887 831 195 25 0 chr12 90015136 90015295 -53771160 + FRAM SINE Alu 1 162 -14 4793 170 50 30 chr12 90015312 90016331 -53770124 + L1MA4 LINE L1 5262 6300 0 32 26 0 0 chr12 90016340 90016379 -53770076 + AT_rich Low_complexity Low_complexity 1 39 0 1215 277 137 79 chr12 90016634 90017621 -53768834 + L2 LINE L2 2255 3313 0 230 136 23 0 chr12 90018751 90018795 -53767660 + GA-rich Low_complexity Low_complexity 2 46 0 930 145 0 91 chr12 90018982 90019168 -53767287 + AluSg/x SINE Alu 137 305 -7 242 246 0 16 chr12 90019521 90019582 -53766873 + MLT1I LTR MaLR 347 406 -3 391 289 7 37 chr12 90021254 90021389 -53765066 + L2 LINE L2 2590 2720 -594 344 261 0 11 chr12 90021508 90021596 -53764859 - MER45A DNA AcHobo -3 175 89 353 298 57 72 chr12 90021773 90021904 -53764551 + L2 LINE L2 3008 3135 -178 2500 47 0 0 chr12 90021904 90022201 -53764254 - AluY SINE Alu -12 299 3 353 298 57 72 chr12 90022201 90022331 -53764124 + L2 LINE L2 3135 3265 -48 180 0 0 0 chr12 90022349 90022369 -53764086 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2047 83 0 68 chr12 90022801 90023126 -53763329 - AluY SINE Alu -8 303 1 398 336 75 19 chr12 90023469 90023683 -53762772 - L2 LINE L2 -1899 1415 1190 210 333 69 0 chr12 90023716 90023788 -53762667 - L2 LINE L2 -2109 1205 1129 1886 190 28 0 chr12 90023932 90024285 -53762170 - MLT1A1 LTR MaLR -2 363 1 428 389 23 12 chr12 90024309 90024566 -53761889 - L2 LINE L2 -2260 1054 795 215 333 188 9 chr12 90024568 90024781 -53761674 - L3 LINE CR1 -980 597 347 1535 263 24 15 chr12 90024781 90025238 -53761217 + LTR40b LTR ERVL 2 462 0 730 314 9 5 chr12 90025335 90025558 -53760897 + L1PA12 LINE L1 8 231 -7350 3369 206 22 20 chr12 90025719 90026549 -53759906 + L1PA15 LINE L1 4246 5076 -1070 4479 149 15 11 chr12 90026556 90027306 -53759149 + L1PA15 LINE L1 5397 6149 -16 372 43 0 0 chr12 90027307 90027353 -53759102 + (TA)n Simple_repeat Simple_repeat 1 46 0 1436 221 42 0 chr12 90027354 90027689 -53758766 - L1ME2 LINE L1 -118 6046 5698 26 0 0 0 chr12 90028054 90028080 -53758375 + AT_rich Low_complexity Low_complexity 1 26 0 203 195 0 24 chr12 90028863 90028904 -53757551 - MIR SINE MIR -10 252 213 474 122 178 19 chr12 90029401 90029508 -53756947 - AluSg/x SINE Alu -1 311 188 419 138 45 0 chr12 90029521 90029614 -53756841 - AluS SINE Alu -239 64 1 2959 148 24 69 chr12 90029693 90030232 -53756223 + MLT2B3 LTR ERVL 1 514 -40 486 49 0 0 chr12 90030232 90030293 -53756162 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 2959 148 24 69 chr12 90030293 90030333 -53756122 + MLT2B3 LTR ERVL 514 554 0 4287 38 0 0 chr12 90030900 90031424 -53755031 - L1PA4 LINE L1 -1237 4909 4386 7460 37 0 0 chr12 90031424 90032669 -53753786 + L1PA4 LINE L1 4910 6155 0 314 296 45 28 chr12 90033038 90033214 -53753241 + L1M4 LINE L1 5035 5213 -933 644 230 64 49 chr12 90033256 90033460 -53752995 + MER3 DNA MER1_type 2 208 -1 267 152 0 0 chr12 90033915 90033961 -53752494 + A-rich Low_complexity Low_complexity 1 46 0 189 308 19 0 chr12 90034211 90034263 -53752192 - MIR SINE MIR -21 241 189 1678 123 20 97 chr12 90034577 90034918 -53751537 + AluYb8 SINE Alu 1 315 -3 1837 132 7 42 chr12 90035055 90035365 -53751090 - AluSx SINE Alu -13 299 1 818 253 107 62 chr12 90035731 90035982 -53750473 + MLT1G1 LTR MaLR 4 277 -318 2093 116 17 3 chr12 90035982 90036274 -53750181 + AluSx SINE Alu 5 300 -12 818 253 107 62 chr12 90036274 90036378 -53750077 + MLT1G1 LTR MaLR 277 375 -220 214 333 144 15 chr12 90036829 90036961 -53749494 + L2 LINE L2 2925 3073 -199 315 340 7 82 chr12 90037585 90037653 -53748802 + L2 LINE L2 3137 3190 -82 1202 179 195 0 chr12 90037653 90037955 -53748500 + MER46B DNA MER2_type 1 236 0 315 340 7 82 chr12 90037955 90038033 -53748422 + L2 LINE L2 3190 3272 0 514 342 61 9 chr12 90038152 90038380 -53748075 - MIR SINE MIR -3 259 20 198 0 0 0 chr12 90039791 90039813 -53746642 + (A)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr12 90040321 90040342 -53746113 + (A)n Simple_repeat Simple_repeat 1 21 0 710 159 25 5 chr12 90041859 90042062 -53744393 + GA-rich Low_complexity Low_complexity 1 207 0 219 323 31 31 chr12 90043384 90043511 -53742944 + MIR SINE MIR 86 212 -50 437 321 34 63 chr12 90043829 90044066 -53742389 + MIR SINE MIR 12 241 -21 242 283 18 62 chr12 90048622 90048735 -53737720 - MIR SINE MIR -12 250 143 615 338 37 20 chr12 90048771 90049067 -53737388 + MLT1I LTR MaLR 80 380 -29 362 340 21 0 chr12 90049085 90049226 -53737229 - MIR SINE MIR -98 164 21 219 36 0 0 chr12 90049402 90049430 -53737025 + (CTATT)n Simple_repeat Simple_repeat 5 32 0 508 260 93 0 chr12 90049516 90049666 -53736789 + MIR SINE MIR 45 208 -54 1693 158 4 0 chr12 90049881 90050153 -53736302 - AluJb SINE Alu -10 302 30 1879 124 3 52 chr12 90050292 90050598 -53735857 - AluSx SINE Alu -21 291 1 21 82 0 0 chr12 90051203 90051252 -53735203 + AT_rich Low_complexity Low_complexity 1 49 0 23 68 0 0 chr12 90051299 90051343 -53735112 + AT_rich Low_complexity Low_complexity 1 44 0 229 324 98 43 chr12 90053540 90053586 -53732869 + L2 LINE L2 2152 2194 -1120 916 206 48 5 chr12 90053586 90053795 -53732660 + MER20 DNA MER1_type 2 219 0 229 324 98 43 chr12 90053795 90054168 -53732287 + L2 LINE L2 2194 2594 -720 194 62 31 0 chr12 90054233 90054265 -53732190 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 24 53 0 0 chr12 90054475 90054513 -53731942 + AT_rich Low_complexity Low_complexity 1 38 0 315 287 220 37 chr12 90054534 90054830 -53731625 - HAL1b LINE L1 -649 699 350 460 309 74 0 chr12 90054921 90055070 -53731385 - MIR SINE MIR -14 248 89 542 306 65 31 chr12 90055085 90055379 -53731076 + MLT1J1 LTR MaLR 91 394 -52 2158 105 0 3 chr12 90055379 90055674 -53730781 + AluSq SINE Alu 1 294 -19 238 275 65 70 chr12 90056076 90056276 -53730179 + L1ME LINE L1 5586 5784 -337 22 35 0 0 chr12 90057295 90057324 -53729131 + AT_rich Low_complexity Low_complexity 1 29 0 532 310 66 10 chr12 90057632 90057829 -53728626 + MIR SINE MIR 55 262 0 213 250 0 0 chr12 90059517 90059565 -53726890 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 472 271 106 0 chr12 90060116 90060267 -53726188 + MIR3 SINE MIR 18 184 -24 1556 100 8 12 chr12 90060649 90060889 -53725566 - L1PA13 LINE L1 0 6163 5925 1830 291 134 37 chr12 90061152 90062082 -53724373 - L2 LINE L2 -229 3084 2069 187 402 25 8 chr12 90062255 90062377 -53724078 + L2 LINE L2 2288 2411 -903 1507 39 1 0 chr12 90062597 90062797 -53723658 - L1P LINE L1 -821 5325 5136 6882 39 1 2 chr12 90062797 90063619 -53722836 + L1PA5 LINE L1 5309 6139 -15 192 40 0 0 chr12 90063619 90063644 -53722811 + (TA)n Simple_repeat Simple_repeat 1 25 0 669 216 43 12 chr12 90064489 90064507 -53721948 - L1MA10 LINE L1 -1 6333 6316 2220 228 30 58 chr12 90064507 90065219 -53721236 - L1ME2 LINE L1 -9 6155 5464 294 300 136 0 chr12 90065247 90065357 -53721098 - L2 LINE L2 -19 3294 3170 285 29 0 0 chr12 90065702 90065736 -53720719 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 184 304 14 29 chr12 90065772 90065841 -53720614 - L2 LINE L2 -660 2654 2587 242 289 216 0 chr12 90066719 90066816 -53719639 - L2 LINE L2 -3 3310 3193 1110 200 14 0 chr12 90066874 90067089 -53719366 - MER20 DNA MER1_type 0 219 2 24 0 0 0 chr12 90067505 90067529 -53718926 + AT_rich Low_complexity Low_complexity 1 24 0 1387 156 0 0 chr12 90069087 90069298 -53717157 - AluJb SINE Alu -15 297 87 35 24 0 0 chr12 90069300 90069342 -53717113 + AT_rich Low_complexity Low_complexity 1 42 0 1210 213 0 21 chr12 90069605 90069887 -53716568 - L1P LINE L1 -1701 4445 4170 3142 137 0 10 chr12 90069887 90070397 -53716058 + L1PA13 LINE L1 5658 6163 0 616 285 86 44 chr12 90070398 90070793 -53715662 + L2 LINE L2 2640 3048 -265 24 77 0 0 chr12 90072821 90072873 -53713582 + AT_rich Low_complexity Low_complexity 1 52 0 180 346 39 54 chr12 90073838 90073968 -53712487 - L2 LINE L2 -4 3268 3141 1511 182 94 24 chr12 90073968 90074309 -53712146 + MLT1A1 LTR MaLR 1 365 0 311 254 0 0 chr12 90074746 90074813 -53711642 - MER58A DNA MER1_type 0 160 94 1961 218 39 21 chr12 90075123 90075636 -53710819 + MER63C DNA MER1_type 4 525 -405 510 273 0 30 chr12 90075636 90075768 -53710687 + MER58A DNA MER1_type 1 128 0 662 218 27 0 chr12 90075774 90075921 -53710534 - MER58B DNA MER1_type -9 332 182 1611 206 43 13 chr12 90075962 90076360 -53710095 + MER63C DNA MER1_type 521 930 0 233 361 26 60 chr12 90076415 90076767 -53709688 - L2 LINE L2 -575 2739 2400 564 269 57 44 chr12 90077222 90077451 -53709004 + MIR SINE MIR 31 260 -2 455 320 114 20 chr12 90077788 90078094 -53708361 + L2 LINE L2 2181 2515 -799 252 322 34 8 chr12 90078128 90078246 -53708209 - MER94 DNA DNA -3 131 11 308 356 25 46 chr12 90078278 90078517 -53707938 + L2 LINE L2 2566 2799 -515 247 282 77 62 chr12 90078521 90078730 -53707725 - L1M4 LINE L1 -2304 3842 3631 534 302 76 44 chr12 90078972 90079316 -53707139 - L1M4 LINE L1 -2863 3283 2929 301 300 67 0 chr12 90079398 90079518 -53706937 - L1M4 LINE L1 -3334 2812 2685 213 119 0 0 chr12 90079728 90079770 -53706685 + (CA)n Simple_repeat Simple_repeat 1 42 0 290 295 107 36 chr12 90079845 90080069 -53706386 + L2 LINE L2 2977 3216 -97 23 33 0 0 chr12 90080474 90080504 -53705951 + AT_rich Low_complexity Low_complexity 1 30 0 33 66 0 0 chr12 90081269 90081330 -53705125 + AT_rich Low_complexity Low_complexity 1 61 0 345 297 125 28 chr12 90082592 90082912 -53703543 + HAL1b LINE L1 91 441 -907 1712 178 12 5 chr12 90082982 90083292 -53703163 - MLT1B LTR MaLR -50 340 15 257 277 157 3 chr12 90083456 90083658 -53702797 - L1MC/D LINE L1 -328 5793 5687 1287 65 6 0 chr12 90083686 90083855 -53702600 - L1PA8 LINE L1 -2 6170 6001 254 227 67 13 chr12 90083869 90083944 -53702511 + HAL1b LINE L1 559 637 -711 337 280 143 50 chr12 90084161 90084540 -53701915 + L1M4 LINE L1 4023 4436 -1710 2140 110 31 0 chr12 90084728 90085018 -53701437 + AluSx SINE Alu 1 299 -13 955 151 129 5 chr12 90085188 90085374 -53701081 + Ricksha_c DNA DNA 26 234 -1812 * 8432 156 76 31 chr12 90085373 90086823 -53699632 + Ricksha_c DNA DNA 349 1881 -1373 2331 72 0 0 chr12 90086823 90087115 -53699340 - AluY SINE Alu -19 292 1 8432 156 76 31 chr12 90087115 90087289 -53699166 + Ricksha_c DNA DNA 1881 2046 0 650 237 44 42 chr12 90087290 90087480 -53698975 - MLT1G1 LTR MaLR -311 284 92 302 298 60 31 chr12 90088150 90088592 -53697863 - L1M4 LINE L1 -1319 4827 4332 21 0 0 0 chr12 90089026 90089047 -53697408 + AT_rich Low_complexity Low_complexity 1 21 0 266 224 53 13 chr12 90089077 90089153 -53697302 - MLT1K LTR MaLR -114 474 396 234 363 67 22 chr12 90090047 90090182 -53696273 + MIR SINE MIR 48 188 -74 32 57 0 0 chr12 90090195 90090248 -53696207 + AT_rich Low_complexity Low_complexity 1 53 0 719 274 20 47 chr12 90091837 90092092 -53694363 - MIR SINE MIR 0 262 15 339 343 191 11 chr12 90092101 90092640 -53693815 - L2 LINE L2 -833 2481 1846 242 179 0 0 chr12 90092744 90092783 -53693672 + L1MC1 LINE L1 6250 6288 -45 312 145 0 0 chr12 90092788 90092850 -53693605 + L1MC1 LINE L1 6272 6333 0 181 355 65 0 chr12 90093224 90093286 -53693169 - MIR SINE MIR -66 142 77 2532 122 3 0 chr12 90093319 90093681 -53692774 + L1PA15 LINE L1 5731 6093 -72 209 238 0 0 chr12 90095100 90095142 -53691313 + L2 LINE L2 3231 3272 0 467 140 9 26 chr12 90095586 90095700 -53690755 + (TA)n Simple_repeat Simple_repeat 1 112 0 327 250 45 0 chr12 90095702 90095790 -53690665 + L1MC4 LINE L1 6612 6703 -1339 225 65 0 0 chr12 90095790 90095821 -53690634 + (TA)n Simple_repeat Simple_repeat 2 32 0 354 311 64 95 chr12 90096821 90097117 -53689338 - L2 LINE L2 0 3272 2986 1516 120 138 31 chr12 90097159 90097195 -53689260 + MER46B DNA MER2_type 1 32 -2699 2149 117 3 0 chr12 90097195 90097493 -53688962 - AluSg SINE Alu -11 299 1 1516 120 138 31 chr12 90097493 90097782 -53688673 + MER46B DNA MER2_type 32 236 0 1078 208 23 9 chr12 90098207 90098428 -53688027 + MER58A DNA MER1_type 1 224 0 1911 138 7 0 chr12 90098881 90099189 -53687266 + AluSx SINE Alu 1 310 0 2024 191 12 60 chr12 90099238 90099650 -53686805 - MER74C LTR ERVL 0 460 73 2316 80 20 0 chr12 90099650 90099951 -53686504 + AluSq SINE Alu 1 307 -6 2024 191 12 60 chr12 90099951 90100021 -53686434 - MER74C LTR ERVL -387 73 1 521 307 25 46 chr12 90100034 90100217 -53686238 + MIR SINE MIR 30 208 -54 1696 153 33 44 chr12 90100217 90100584 -53685871 - THE1B LTR MaLR -1 363 1 521 307 25 46 chr12 90100584 90100638 -53685817 + MIR SINE MIR 208 262 0 21 36 0 0 chr12 90100927 90100955 -53685500 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr12 90101223 90101262 -53685193 + AT_rich Low_complexity Low_complexity 1 39 0 311 316 166 29 chr12 90102920 90103233 -53683222 - MLT1L LTR MaLR -259 356 1 2032 142 7 0 chr12 90103395 90103704 -53682751 - AluSx SINE Alu -1 311 1 5607 161 37 8 chr12 90104132 90105833 -53680622 - L1PA16 LINE L1 -18 6148 4381 216 0 0 0 chr12 90105833 90105857 -53680598 + (TG)n Simple_repeat Simple_repeat 2 25 0 5607 161 37 8 chr12 90105857 90105971 -53680484 - L1PA16 LINE L1 -1785 4381 4272 290 333 11 0 chr12 90106032 90106119 -53680336 - L2 LINE L2 0 3272 3185 822 184 184 8 chr12 90106325 90106564 -53679891 + MER58B DNA MER1_type 61 341 0 292 282 98 83 chr12 90106698 90106975 -53679480 - L2 LINE L2 -467 2847 2567 * 310 265 31 0 chr12 90106941 90107039 -53679416 + MER5C DNA MER1_type 8 108 -216 282 56 0 0 chr12 90107107 90107143 -53679312 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 222 310 56 56 chr12 90107957 90108099 -53678356 + MIR SINE MIR 56 197 -65 243 0 0 0 chr12 90109641 90109668 -53676787 + (CA)n Simple_repeat Simple_repeat 2 28 0 470 137 0 0 chr12 90110717 90110805 -53675650 - L1MB1 LINE L1 -3 6165 6078 308 352 57 24 chr12 90111117 90111327 -53675128 + L2 LINE L2 1759 1975 -1339 221 246 53 18 chr12 90112552 90112609 -53673846 - L2 LINE L2 -7 3265 3207 22 56 0 0 chr12 90116572 90116608 -53669847 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 90117553 90117574 -53668881 + AT_rich Low_complexity Low_complexity 1 21 0 543 335 101 38 chr12 90117899 90118296 -53668159 + L3 LINE CR1 1153 1574 -3 1579 228 280 10 chr12 90118568 90118842 -53667613 + L1MC4 LINE L1 6840 7039 -1003 1743 159 60 30 chr12 90118842 90119206 -53667249 + THE1C LTR MaLR 1 375 0 1579 228 280 10 chr12 90119206 90119724 -53666731 + L1MC4 LINE L1 7039 7846 -196 203 424 12 18 chr12 90119871 90120041 -53666414 + L3 LINE CR1 1356 1524 -53 224 324 27 54 chr12 90120046 90120268 -53666187 + MIR SINE MIR 20 235 -27 237 236 214 73 chr12 90120275 90120453 -53666002 - L2 LINE L2 0 3313 3111 278 356 10 0 chr12 90120716 90120820 -53665635 - MIR SINE MIR -8 254 150 1146 288 104 43 chr12 90120827 90121843 -53664612 + L2 LINE L2 2141 3313 0 294 333 0 11 chr12 90121837 90121927 -53664528 - MIR SINE MIR -155 107 19 * 468 217 142 17 chr12 90122753 90122873 -53663582 - MIR SINE MIR -7 255 121 428 324 95 8 chr12 90122928 90123169 -53663286 - MLT1J1 LTR MaLR -169 277 16 451 372 115 29 chr12 90123651 90123860 -53662595 - L2 LINE L2 -831 2483 2293 1860 221 80 4 chr12 90123860 90124325 -53662130 + MLT1D LTR MaLR 4 503 -2 451 372 115 29 chr12 90124325 90124593 -53661862 - L2 LINE L2 -1021 2293 1965 331 299 60 30 chr12 90125104 90125238 -53661217 - MIR SINE MIR -71 191 54 2182 86 4 0 chr12 90126347 90126654 -53659801 - AluSp SINE Alu 0 310 3 238 360 58 0 chr12 90127030 90127116 -53659339 + L2 LINE L2 3133 3223 -49 469 291 77 14 chr12 90127289 90127627 -53658828 + MLT1I LTR MaLR 6 409 0 23 68 0 0 chr12 90127923 90127967 -53658488 + AT_rich Low_complexity Low_complexity 1 44 0 544 288 104 42 chr12 90128157 90128397 -53658058 - MIR SINE MIR -2 260 6 2538 55 0 0 chr12 90128493 90128803 -53657652 - AluY SINE Alu -1 310 1 386 284 142 55 chr12 90129067 90129285 -53657170 - MIR SINE MIR -6 256 20 23 86 0 0 chr12 90133482 90133540 -53652915 + AT_rich Low_complexity Low_complexity 1 58 0 205 229 0 21 chr12 90133680 90133728 -53652727 + T-rich Low_complexity Low_complexity 3 49 0 234 180 0 40 chr12 90135065 90135115 -53651340 + GA-rich Low_complexity Low_complexity 2 49 0 1510 199 0 0 chr12 90136006 90136267 -53650188 + AluJo SINE Alu 1 261 -51 1904 219 75 23 chr12 90136862 90137059 -53649396 + L1MD3 LINE L1 6400 6585 -1275 189 74 0 0 chr12 90137059 90137086 -53649369 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1904 219 75 23 chr12 90137086 90137579 -53648876 + L1MD3 LINE L1 6585 7256 -604 796 271 139 28 chr12 90137603 90137991 -53648464 + L2 LINE L2 2883 3313 0 230 277 59 8 chr12 90138029 90138148 -53648307 - L2 LINE L2 -72 3241 3117 327 319 181 9 chr12 90138377 90138587 -53647868 - L2 LINE L2 -475 2839 2594 225 241 0 35 chr12 90138753 90138811 -53647644 + (CATA)n Simple_repeat Simple_repeat 4 59 0 1842 104 0 0 chr12 90139000 90139251 -53647204 + AluSq SINE Alu 63 313 0 27 0 0 0 chr12 90139256 90139283 -53647172 + AT_rich Low_complexity Low_complexity 1 27 0 498 279 20 20 chr12 90140432 90140679 -53645776 + AluSq SINE Alu 65 311 -2 241 351 61 44 chr12 90140833 90140947 -53645508 + L2 LINE L2 3151 3266 -6 197 313 0 101 chr12 90140978 90141077 -53645378 - L2 LINE L2 -4 3268 3180 21 0 0 0 chr12 90141174 90141195 -53645260 + AT_rich Low_complexity Low_complexity 1 21 0 222 118 0 0 chr12 90141481 90141515 -53644940 + (A)n Simple_repeat Simple_repeat 1 34 0 247 298 39 39 chr12 90143087 90143191 -53643264 - MIR3 SINE MIR -1 207 104 682 263 15 0 chr12 90143282 90143419 -53643036 + MIR SINE MIR 34 172 -90 437 351 40 5 chr12 90144630 90144832 -53641623 + MIR SINE MIR 53 261 -1 1630 138 97 24 chr12 90146011 90146351 -53640104 + MLT1A1 LTR MaLR 1 365 0 259 359 43 34 chr12 90146517 90146634 -53639821 - L2 LINE L2 0 3272 3155 507 168 0 4 chr12 90146775 90146909 -53639546 - MER53 DNA DNA -3 186 3 731 224 0 0 chr12 90147242 90147367 -53639088 + FLAM_C SINE Alu 1 125 -8 327 239 0 0 chr12 90147367 90147455 -53639000 + GA-rich Low_complexity Low_complexity 1 88 0 622 182 24 12 chr12 90147513 90147683 -53638772 + GA-rich Low_complexity Low_complexity 2 173 0 234 214 191 0 chr12 90147906 90147995 -53638460 + MIR SINE MIR 108 213 -49 1451 246 2 25 chr12 90148115 90148513 -53637942 + L1MC2 LINE L1 4819 5207 -939 29368 32 16 3 chr12 90148516 90154556 -53631899 + L1PA2 LINE L1 3 6155 0 4859 184 62 4 chr12 90154545 90155630 -53630825 + L1MC2 LINE L1 5188 6335 -9 * 189 111 0 0 chr12 90158553 90158580 -53627875 + L2 LINE L2 3279 3305 -8 24 77 0 0 chr12 90159514 90159566 -53626889 + AT_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr12 90159600 90159643 -53626812 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 90159834 90159857 -53626598 + AT_rich Low_complexity Low_complexity 1 23 0 336 272 24 40 chr12 90160211 90160336 -53626119 + MIR SINE MIR 89 211 -51 1103 243 40 60 chr12 90160547 90161016 -53625439 - Charlie4a DNA MER1_type -24 484 25 1946 84 69 4 chr12 90162227 90162489 -53623966 + AluSq SINE Alu 1 279 -34 396 59 0 0 chr12 90162493 90162544 -53623911 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr12 90166618 90166653 -53619802 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 90167606 90167635 -53618820 + AT_rich Low_complexity Low_complexity 1 29 0 232 256 12 0 chr12 90167657 90167739 -53618716 + (TA)n Simple_repeat Simple_repeat 2 84 0 316 405 52 0 chr12 90168800 90169010 -53617445 - MIR SINE MIR -1 261 41 655 348 42 35 chr12 90169631 90170036 -53616419 - L3 LINE CR1 -199 1378 971 206 286 24 12 chr12 90171434 90171518 -53614937 + (CA)n Simple_repeat Simple_repeat 1 85 0 25 31 0 0 chr12 90173545 90173577 -53612878 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chr12 90173718 90173787 -53612668 + AT_rich Low_complexity Low_complexity 1 69 0 325 239 0 0 chr12 90223787 90223854 -53562601 - MIR SINE MIR -133 129 63 1275 162 16 43 chr12 90224116 90224369 -53562086 + MER96B DNA MER1_type? 171 416 -1 21 36 0 0 chr12 90224740 90224768 -53561687 + AT_rich Low_complexity Low_complexity 1 28 0 190 70 0 70 chr12 90225896 90225939 -53560516 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 395 0 0 0 chr12 90225940 90225988 -53560467 - L1PA3 LINE L1 -3 6152 6105 6404 30 0 0 chr12 90226088 90226847 -53559608 - L1P LINE L1 -3914 2232 1474 584 143 34 11 chr12 90226865 90227376 -53559079 + (TA)n Simple_repeat Simple_repeat 1 522 0 1958 164 13 39 chr12 90227377 90227766 -53558689 + L1PA15 LINE L1 5782 6160 -5 4828 176 83 2 chr12 90227771 90228741 -53557714 + L1MC1 LINE L1 5285 6333 0 1846 182 37 11 chr12 90230550 90230930 -53555525 - MLT1B LTR MaLR 0 390 1 2398 48 3 0 chr12 90231090 90231383 -53555072 + AluY SINE Alu 1 294 -17 2088 187 46 11 chr12 90231794 90232233 -53554222 - MSTB2 LTR MaLR 0 457 4 1425 229 0 20 chr12 90234284 90234585 -53551870 + AluJb SINE Alu 1 295 -17 230 324 0 0 chr12 90235260 90235334 -53551121 + L1MDa LINE L1 1763 1836 -4704 536 331 133 18 chr12 90235654 90235992 -53550463 - LTR16A LTR ERVL -12 438 62 267 341 77 4 chr12 90236087 90236333 -53550122 + L1M4 LINE L1 4553 4816 -1330 646 217 169 0 chr12 90236437 90236603 -53549852 + MER2 DNA MER2_type 152 345 0 5804 73 19 1 chr12 90236741 90237519 -53548936 - L1PA7 LINE L1 -1 6153 5362 2781 13 0 0 chr12 90237703 90238014 -53548441 - AluYa5 SINE Alu 0 311 1 23 0 0 0 chr12 90238106 90238129 -53548326 + AT_rich Low_complexity Low_complexity 1 23 0 200 376 65 0 chr12 90238701 90238794 -53547661 - L2 LINE L2 -27 3245 3147 232 306 56 21 chr12 90239131 90239275 -53547180 + L2 LINE L2 1490 1638 -1676 606 348 192 14 chr12 90239390 90240425 -53546030 + L2 LINE L2 1851 3069 -203 184 116 23 93 chr12 90240600 90240643 -53545812 + L2 LINE L2 3269 3308 -5 21 0 0 0 chr12 90240764 90240785 -53545670 + AT_rich Low_complexity Low_complexity 1 21 0 1927 133 0 19 chr12 90240863 90241171 -53545284 + AluSx SINE Alu 1 302 -10 1253 38 0 0 chr12 90241173 90241330 -53545125 + L1PA4 LINE L1 5998 6154 -1 257 184 0 0 chr12 90242517 90242555 -53543900 + MER2 DNA MER2_type 2 39 -306 46 74 0 0 chr12 90242741 90242836 -53543619 + AT_rich Low_complexity Low_complexity 1 95 0 2520 81 22 8 chr12 90242905 90243263 -53543192 + L1PA7 LINE L1 5790 6152 -2 709 294 107 57 chr12 90243367 90243608 -53542847 - L1ME3A LINE L1 -220 6019 5792 2148 96 10 10 chr12 90243608 90243922 -53542533 + L1PA13 LINE L1 5831 6144 -19 709 294 107 57 chr12 90243922 90245043 -53541412 - L1ME3A LINE L1 -447 5792 4587 521 293 38 11 chr12 90245279 90245566 -53540889 - L1ME3A LINE L1 -2710 3505 3211 888 253 93 47 chr12 90245567 90246263 -53540192 - L1ME3A LINE L1 -3185 3030 2303 352 307 44 0 chr12 90246284 90246421 -53540034 - L1ME3A LINE L1 -4096 2300 2158 354 45 0 0 chr12 90246526 90246570 -53539885 + (TC)n Simple_repeat Simple_repeat 2 45 0 208 154 44 33 chr12 90246570 90246661 -53539794 + (TA)n Simple_repeat Simple_repeat 2 93 0 21 0 0 0 chr12 90246812 90246833 -53539622 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr12 90247018 90247044 -53539411 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 1631 166 27 14 chr12 90247050 90247223 -53539232 - AluJo SINE Alu -12 300 120 180 77 0 0 chr12 90247223 90247249 -53539206 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1631 166 27 14 chr12 90247249 90247371 -53539084 - AluJo SINE Alu -192 120 1 1829 286 22 14 chr12 90248171 90248671 -53537784 - LTR40a LTR ERVL -15 504 1 2498 114 22 3 chr12 90249834 90250202 -53536253 + THE1C LTR MaLR 1 375 0 277 151 0 38 chr12 90250589 90250642 -53535813 + L1M4 LINE L1 4720 4770 -1376 344 184 0 58 chr12 90250647 90250750 -53535705 + L1MA7 LINE L1 6192 6288 -3 2089 215 15 20 chr12 90250862 90251401 -53535054 + L1M4 LINE L1 4762 5297 -849 4381 282 54 26 chr12 90251417 90252833 -53533622 + L1PA13 LINE L1 53 1508 -5331 2657 237 6 0 chr12 90252843 90253481 -53532974 + L1PA13 LINE L1 2009 2650 -4199 508 153 0 12 chr12 90253481 90253566 -53532889 - THE1B LTR MaLR 0 364 281 300 355 58 0 chr12 90253703 90253824 -53532631 + HAL1 LINE L1 57 184 -2323 2020 122 3 11 chr12 90253950 90254236 -53532219 + AluSc SINE Alu 1 284 -25 180 0 0 0 chr12 90254240 90254260 -53532195 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 916 216 40 116 chr12 90254494 90254741 -53531714 - MLT1B LTR MaLR 0 390 126 315 71 0 0 chr12 90254741 90254783 -53531672 + (CA)n Simple_repeat Simple_repeat 1 42 0 195 42 0 0 chr12 90254782 90254806 -53531649 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 916 216 40 116 chr12 90254783 90254980 -53531475 - MLT1B LTR MaLR -264 126 1 2420 248 127 46 chr12 90254980 90255537 -53530918 + HAL1 LINE L1 621 1131 -1376 1912 148 3 22 chr12 90255537 90255855 -53530600 + AluSx SINE Alu 1 312 0 2420 248 127 46 chr12 90255855 90256451 -53530004 + HAL1 LINE L1 1131 1868 -639 6765 33 0 0 chr12 90256695 90257516 -53528939 - L1P LINE L1 -1049 5097 4277 3268 19 0 0 chr12 90257516 90257889 -53528566 + L1PA2 LINE L1 5778 6155 0 345 309 63 38 chr12 90258072 90258254 -53528201 + MIR SINE MIR 5 191 -71 496 373 54 34 chr12 90258327 90259011 -53527444 - L2 LINE L2 0 3272 2578 251 208 57 0 chr12 90259093 90259146 -53527309 + MIR SINE MIR 128 183 -79 203 296 0 0 chr12 90259962 90260006 -53526449 - L2 LINE L2 -38 3234 3191 430 309 122 62 chr12 90260814 90261134 -53525321 + L2 LINE L2 2933 3271 -1 21 0 0 0 chr12 90261600 90261621 -53524834 + AT_rich Low_complexity Low_complexity 1 21 0 639 280 78 45 chr12 90261622 90261865 -53524590 + MIR SINE MIR 1 251 -11 28 61 0 0 chr12 90262719 90262768 -53523687 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr12 90264148 90264178 -53522277 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr12 90265965 90266021 -53520434 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr12 90266461 90266486 -53519969 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 90267137 90267162 -53519293 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 90267750 90267772 -53518683 + AT_rich Low_complexity Low_complexity 1 22 0 2266 106 0 6 chr12 90268625 90268936 -53517519 + AluSq SINE Alu 1 309 -4 320 286 66 0 chr12 90269158 90269249 -53517206 + L2 LINE L2 3197 3293 -20 305 185 0 15 chr12 90269426 90269491 -53516964 + HsTC2 DNA Tc2 3 66 -1832 207 250 16 31 chr12 90270007 90270071 -53516384 - MIR SINE MIR -109 153 91 39 22 0 0 chr12 90270854 90270900 -53515555 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr12 90270914 90270942 -53515513 + AT_rich Low_complexity Low_complexity 1 28 0 416 189 34 34 chr12 90270944 90271119 -53515336 + (TATAA)n Simple_repeat Simple_repeat 2 176 0 22 0 0 0 chr12 90271119 90271141 -53515314 + AT_rich Low_complexity Low_complexity 1 22 0 326 186 39 23 chr12 90271225 90271354 -53515101 + (TTATA)n Simple_repeat Simple_repeat 5 135 0 733 169 71 13 chr12 90271547 90271701 -53514754 - THE1B LTR MaLR -201 163 1 11343 96 9 2 chr12 90271701 90273271 -53513184 - THE1B-int LTR MaLR 0 1580 1 1919 144 13 45 chr12 90273271 90273647 -53512808 - THE1B LTR MaLR 0 364 1 13958 195 26 26 chr12 90273654 90275504 -53510951 + L1P4 LINE L1 1951 3798 -2367 2057 119 0 32 chr12 90275504 90275815 -53510640 + AluSx SINE Alu 1 301 -11 13958 195 26 26 chr12 90275815 90276742 -53509713 + L1P4 LINE L1 3798 4723 -1442 1725 131 81 36 chr12 90276742 90277101 -53509354 + THE1C LTR MaLR 1 375 0 13958 195 26 26 chr12 90277101 90277766 -53508689 + L1P4 LINE L1 4723 5395 -770 2300 81 0 3 chr12 90277766 90278062 -53508393 + AluY SINE Alu 1 295 -16 13958 195 26 26 chr12 90278062 90278460 -53507995 + L1P4 LINE L1 5395 5791 -374 505 52 100 16 chr12 90278461 90278712 -53507743 + (TA)n Simple_repeat Simple_repeat 1 272 0 343 113 72 10 chr12 90278712 90278809 -53507646 + (TTATA)n Simple_repeat Simple_repeat 4 106 0 25286 28 1 1 chr12 90278809 90282636 -53503819 - L1PA2 LINE L1 0 6155 2325 224 167 25 50 chr12 90282826 90282946 -53503509 + (TA)n Simple_repeat Simple_repeat 2 118 0 863 76 0 30 chr12 90282976 90283107 -53503348 + HERVL LTR ERVL 5359 5485 -169 215 154 26 0 chr12 90283107 90283146 -53503309 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 476 354 98 23 chr12 90283474 90283872 -53502583 - L2 LINE L2 0 3313 2886 287 270 0 14 chr12 90284239 90284313 -53502142 + MIR SINE MIR 158 230 -32 5936 107 12 9 chr12 90284430 90285600 -53500855 + HERVL-A1 LTR ERVL 2755 5654 0 2103 170 35 29 chr12 90285600 90286144 -53500311 + MLT2A1 LTR ERVL 1 552 -2 303 299 15 0 chr12 90286399 90286466 -53499989 - L2 LINE L2 -2 3270 3203 3330 126 31 23 chr12 90287370 90287616 -53498839 + L1PA16 LINE L1 5582 5824 -342 2102 100 23 10 chr12 90287616 90287916 -53498539 + AluSx SINE Alu 1 304 -8 3330 126 31 23 chr12 90287916 90288240 -53498215 + L1PA16 LINE L1 5824 6157 -9 455 296 54 32 chr12 90288619 90288805 -53497650 + MIR SINE MIR 59 248 -14 694 315 23 19 chr12 90288863 90289120 -53497335 - MIR SINE MIR -2 260 3 185 35 69 0 chr12 90289322 90289351 -53497104 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr12 90289605 90289637 -53496818 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 90289818 90289839 -53496616 + AT_rich Low_complexity Low_complexity 1 21 0 359 215 65 9 chr12 90290097 90290204 -53496251 + L1MB7 LINE L1 6051 6163 -21 21 0 0 0 chr12 90291206 90291227 -53495228 + AT_rich Low_complexity Low_complexity 1 21 0 2460 48 3 0 chr12 90291333 90291623 -53494832 - AluY SINE Alu -18 293 3 36 97 0 0 chr12 90291921 90292034 -53494421 + AT_rich Low_complexity Low_complexity 1 113 0 28 0 0 0 chr12 90292420 90292448 -53494007 + AT_rich Low_complexity Low_complexity 1 28 0 25 83 0 0 chr12 90292562 90292622 -53493833 + AT_rich Low_complexity Low_complexity 1 60 0 242 328 95 48 chr12 90293780 90293969 -53492486 + MIR SINE MIR 47 244 -18 180 77 0 0 chr12 90294469 90294495 -53491960 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 24 32 0 0 chr12 90294784 90294815 -53491640 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 90296312 90296333 -53490122 + AT_rich Low_complexity Low_complexity 1 21 0 186 228 53 35 chr12 90296863 90296920 -53489535 - MIR SINE MIR -121 141 84 32 67 0 0 chr12 90298389 90298449 -53488006 + AT_rich Low_complexity Low_complexity 1 60 0 35 41 0 0 chr12 90299687 90299736 -53486719 + AT_rich Low_complexity Low_complexity 1 49 0 1487 138 0 4 chr12 90301519 90301773 -53484682 + L1MA8 LINE L1 6034 6286 -5 3779 118 0 0 chr12 90303091 90303665 -53482790 + L1P LINE L1 4793 5366 -780 1210 259 45 31 chr12 90303766 90304121 -53482334 + HERVL40 LTR ERVL 2701 3060 -2470 610 259 54 64 chr12 90304136 90304375 -53482080 + HERVL40 LTR ERVL 1453 1623 -1414 257 327 44 18 chr12 90304354 90304467 -53481988 + HERVL40 LTR ERVL 3555 3670 -1860 * 430 242 117 0 chr12 90304504 90304624 -53481831 + HERVL40 LTR ERVL 3751 3884 -1646 250 310 20 10 chr12 90304605 90304705 -53481750 + HERVL40 LTR ERVL 1769 1869 -1168 * 598 327 56 28 chr12 90304920 90305244 -53481211 + HERVL40 LTR ERVL 4430 4762 -768 321 185 0 31 chr12 90305461 90305526 -53480929 + HERVL40 LTR ERVL 2736 2798 -239 503 254 120 7 chr12 90305633 90305775 -53480680 + HERVL40 LTR ERVL 5373 5530 0 1075 256 183 14 chr12 90305777 90306219 -53480236 + LTR40a LTR ERVL 3 519 0 196 28 83 0 chr12 90306729 90306765 -53479690 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 475 367 82 24 chr12 90306853 90307417 -53479038 + L2 LINE L2 2669 3261 -52 1959 123 7 10 chr12 90307470 90307778 -53478677 + L1PA15 LINE L1 5852 6158 -7 251 198 23 0 chr12 90307949 90308035 -53478420 + L1MDa LINE L1 1264 1351 -5189 4935 164 27 22 chr12 90308130 90309303 -53477152 + L1MA8 LINE L1 5062 6240 -51 351 260 166 77 chr12 90309304 90309743 -53476712 + L1MDa LINE L1 1607 2084 -4637 805 266 60 47 chr12 90309800 90310523 -53475932 + L1MDa LINE L1 2437 3132 -3408 * 1415 287 62 32 chr12 90310521 90311308 -53475147 + L1MDa LINE L1 3947 4757 -1783 649 338 39 0 chr12 90312486 90312693 -53473762 - HERV16 LTR ERVL -1971 3025 2811 1560 208 59 3 chr12 90313129 90313485 -53472970 + L1MC4 LINE L1 7414 7789 -253 26 74 0 0 chr12 90314282 90314336 -53472119 + AT_rich Low_complexity Low_complexity 1 54 0 372 306 111 62 chr12 90314434 90314803 -53471652 + L1MC4a LINE L1 5820 6206 -1602 1740 213 50 4 chr12 90315017 90315481 -53470974 + MER89 LTR ERV1 11 558 -1 2449 241 103 40 chr12 90315598 90316912 -53469543 + L1MC5 LINE L1 6494 7896 -65 503 277 115 42 chr12 90317164 90317424 -53469031 - L2 LINE L2 -14 3299 3021 1654 179 21 0 chr12 90318885 90319204 -53467251 - AluJb SINE Alu 0 325 1 562 208 72 85 chr12 90320416 90320520 -53465935 - MLT1J2 LTR MaLR -217 233 129 1807 125 34 24 chr12 90320520 90320815 -53465640 - AluSx SINE Alu -14 298 1 562 208 72 85 chr12 90320815 90320946 -53465509 - MLT1J2 LTR MaLR -321 129 1 194 298 101 90 chr12 90321206 90321394 -53465061 + L3 LINE CR1 1360 1549 -28 757 295 212 9 chr12 90321686 90322314 -53464141 + L2 LINE L2 2422 3207 -106 450 278 56 50 chr12 90322376 90322556 -53463899 + L2 LINE L2 3133 3313 0 1081 260 17 14 chr12 90322632 90322920 -53463535 + MLT1E3 LTR MaLR 293 581 -43 231 149 0 43 chr12 90323057 90323104 -53463351 + MLT1I LTR MaLR 99 143 -266 1835 160 3 0 chr12 90323138 90323425 -53463030 - AluJo SINE Alu -24 288 1 327 230 18 87 chr12 90323535 90323650 -53462805 + MLT1I LTR MaLR 291 386 -23 388 268 57 49 chr12 90324096 90324361 -53462094 - L2 LINE L2 -1553 1761 1495 204 286 0 0 chr12 90324977 90325026 -53461429 + (CAT)n Simple_repeat Simple_repeat 3 51 0 210 143 0 0 chr12 90325220 90325255 -53461200 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 2514 52 0 3 chr12 90326536 90326846 -53459609 - AluY SINE Alu -2 309 1 1037 112 0 0 chr12 90330619 90330762 -53455693 + AluSc SINE Alu 143 285 -24 304 39 20 20 chr12 90330765 90330816 -53455639 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5783 195 23 24 chr12 90331010 90332896 -53453559 + L1MC1 LINE L1 4456 6333 0 482 160 34 50 chr12 90333017 90333136 -53453319 - ORSL DNA AcHobo -158 117 1 190 341 66 50 chr12 90334639 90334714 -53451741 + MER5A DNA MER1_type 1 73 -116 3385 71 19 15 chr12 90334714 90335192 -53451263 + L1PA14 LINE L1 5682 6161 0 190 341 66 50 chr12 90335192 90335298 -53451157 + MER5A DNA MER1_type 73 185 -4 2294 50 0 10 chr12 90335299 90335618 -53450837 + AluY SINE Alu 1 311 0 30 59 0 0 chr12 90335880 90335931 -53450524 + AT_rich Low_complexity Low_complexity 1 51 0 432 0 0 0 chr12 90337793 90337841 -53448614 + (CA)n Simple_repeat Simple_repeat 1 48 0 350 331 25 0 chr12 90338180 90338301 -53448154 - L2 LINE L2 0 3313 3190 26 74 0 0 chr12 90339372 90339426 -53447029 + AT_rich Low_complexity Low_complexity 1 54 0 216 0 0 0 chr12 90339779 90339803 -53446652 + (TG)n Simple_repeat Simple_repeat 2 25 0 197 333 36 0 chr12 90340132 90340216 -53446239 - MIR SINE MIR 0 262 176 333 279 105 105 chr12 90340351 90340724 -53445731 + MLT1J2 LTR MaLR 68 440 -10 234 304 62 45 chr12 90340775 90340887 -53445568 + MIR SINE MIR 132 245 -17 671 265 100 30 chr12 90341203 90341433 -53445022 + MIR SINE MIR 17 262 0 481 281 73 62 chr12 90341658 90341789 -53444666 - MIR SINE MIR -25 237 102 615 252 0 0 chr12 90341789 90341916 -53444539 + FLAM_A SINE Alu 1 127 -6 481 281 73 62 chr12 90341916 90341962 -53444493 - MIR SINE MIR -160 102 58 862 199 21 16 chr12 90341979 90342165 -53444290 - MER5A DNA MER1_type -2 187 1 196 380 0 0 chr12 90343129 90343179 -53443276 - L3 LINE CR1 -1482 95 46 645 111 0 0 chr12 90343322 90343412 -53443043 + AluJ/FLAM SINE Alu 3 92 -220 1762 291 59 26 chr12 90343419 90344402 -53442053 + L1MEc LINE L1 574 1588 -4808 228 293 17 0 chr12 90344390 90344448 -53442007 + L1ME1 LINE L1 5992 6050 -116 * 342 266 325 0 chr12 90345380 90345549 -53440906 + MIR SINE MIR 17 240 -22 2326 109 3 0 chr12 90345653 90345965 -53440490 + AluSp SINE Alu 1 313 0 334 271 4 93 chr12 90346027 90346252 -53440203 + L1ME2 LINE L1 695 899 -5497 785 245 121 15 chr12 90346261 90346592 -53439863 + L1ME2 LINE L1 4923 5288 -927 1390 252 102 13 chr12 90346608 90347301 -53439154 + L1ME2 LINE L1 5327 6096 -137 23 0 0 0 chr12 90347637 90347660 -53438795 + AT_rich Low_complexity Low_complexity 1 23 0 31 88 0 0 chr12 90347825 90347905 -53438550 + AT_rich Low_complexity Low_complexity 1 80 0 30 69 0 0 chr12 90348437 90348495 -53437960 + AT_rich Low_complexity Low_complexity 1 58 0 252 0 0 0 chr12 90348761 90348789 -53437666 + (TA)n Simple_repeat Simple_repeat 2 29 0 227 214 0 36 chr12 90349437 90349493 -53436962 + GA-rich Low_complexity Low_complexity 3 56 0 33 43 0 0 chr12 90349603 90349650 -53436805 + AT_rich Low_complexity Low_complexity 1 47 0 201 338 76 35 chr12 90350654 90350799 -53435656 - MIR SINE MIR -78 184 34 24 32 0 0 chr12 90350845 90350876 -53435579 + AT_rich Low_complexity Low_complexity 1 31 0 35 54 0 0 chr12 90352585 90352641 -53433814 + AT_rich Low_complexity Low_complexity 1 56 0 24 77 0 0 chr12 90353015 90353067 -53433388 + AT_rich Low_complexity Low_complexity 1 52 0 1860 57 20 0 chr12 90354136 90354380 -53432075 + L1PA5 LINE L1 5801 6049 -105 1046 170 105 22 chr12 90354380 90354609 -53431846 + MSTA LTR MaLR 181 428 0 11251 236 16 29 chr12 90354609 90357297 -53429158 + L1PA16 LINE L1 2165 4805 -1341 16848 133 39 3 chr12 90357297 90359908 -53426547 - Charlie3 DNA MER1_type -4 2706 1 11251 236 16 29 chr12 90359908 90360458 -53425997 + L1PA16 LINE L1 4805 5361 -785 2096 193 57 2 chr12 90360458 90360862 -53425593 - MSTA LTR MaLR 0 428 3 7991 193 42 3 chr12 90360873 90362462 -53423993 - MSTA-int LTR MaLR -1 1650 1 239 186 0 0 chr12 90362462 90362505 -53423950 - MSTA LTR MaLR 0 428 386 12008 50 2 2 chr12 90362511 90364820 -53421635 + L1PA5 LINE L1 3857 6171 0 305 296 32 16 chr12 90364932 90365057 -53421398 + MIR3 SINE MIR 12 138 -70 2189 143 66 8 chr12 90365143 90365522 -53420933 - MSTA LTR MaLR -27 401 1 4633 154 11 10 chr12 90365522 90366294 -53420161 + L1PA16 LINE L1 5357 6132 -34 1178 141 249 51 chr12 90366294 90366607 -53419848 + THE1C LTR MaLR 1 375 0 4633 154 11 10 chr12 90366607 90366626 -53419829 + L1PA16 LINE L1 6132 6149 -17 2274 110 0 0 chr12 90366813 90367112 -53419343 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 90367208 90367229 -53419226 + AT_rich Low_complexity Low_complexity 1 21 0 2373 82 0 0 chr12 90368018 90368312 -53418143 + AluSc SINE Alu 1 294 -15 268 311 66 13 chr12 90368706 90368857 -53417598 + L1ME LINE L1 738 896 -5520 260 279 119 27 chr12 90369113 90369448 -53417007 + L1MEd LINE L1 1235 1553 -4863 213 39 0 0 chr12 90369512 90369538 -53416917 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1923 139 16 7 chr12 90369733 90370042 -53416413 + AluSx SINE Alu 1 312 0 21 36 0 0 chr12 90370075 90370103 -53416352 + AT_rich Low_complexity Low_complexity 1 28 0 306 316 92 13 chr12 90370199 90370351 -53416104 + L1MEd LINE L1 2239 2402 -4205 583 312 37 53 chr12 90370791 90371245 -53415210 + L1ME LINE L1 908 1366 -5050 21 36 0 0 chr12 90371253 90371281 -53415174 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr12 90371335 90371377 -53415078 + AT_rich Low_complexity Low_complexity 1 42 0 238 221 29 29 chr12 90371416 90371484 -53414971 + L1ME LINE L1 1486 1553 -4863 275 288 136 0 chr12 90371697 90371829 -53414626 + L1ME LINE L1 1854 2003 -4604 406 270 51 83 chr12 90371881 90372228 -53414227 + L1ME LINE L1 2270 2606 -4001 1838 88 98 28 chr12 90372228 90372513 -53413942 + AluSg SINE Alu 1 305 -5 406 270 51 83 chr12 90372513 90372539 -53413916 + L1ME LINE L1 2606 2631 -3976 1849 217 66 19 chr12 90372543 90373026 -53413429 + Charlie1b DNA MER1_type 2 507 -16 395 255 20 20 chr12 90373042 90373195 -53413260 + L1ME LINE L1 2621 2773 -3653 370 267 127 40 chr12 90373297 90373447 -53413008 + MIR SINE MIR 26 188 -74 1567 176 0 53 chr12 90373756 90374057 -53412398 - AluJb SINE Alu -17 295 11 228 189 0 0 chr12 90374059 90374096 -53412359 - Alu SINE Alu -266 37 1 372 302 164 31 chr12 90374746 90374905 -53411550 + MIR3 SINE MIR 12 191 -17 32 26 0 0 chr12 90375402 90375441 -53411014 + AT_rich Low_complexity Low_complexity 1 39 0 239 234 32 117 chr12 90375545 90375639 -53410816 + L2 LINE L2 3225 3310 -3 528 291 8 0 chr12 90375757 90375874 -53410581 + MIR SINE MIR 18 135 -127 1379 152 93 59 chr12 90375886 90376034 -53410421 - AluJo SINE Alu -13 299 158 1987 153 67 41 chr12 90376034 90376451 -53410004 + MSTA LTR MaLR 1 428 0 1379 152 93 59 chr12 90376451 90376591 -53409864 - AluJo SINE Alu -154 158 1 287 258 0 0 chr12 90376600 90376666 -53409789 + MIR SINE MIR 150 215 -47 1890 110 32 29 chr12 90377105 90377451 -53409004 + L1MA1 LINE L1 5956 6302 0 25 51 0 0 chr12 90378335 90378374 -53408081 + AT_rich Low_complexity Low_complexity 1 39 0 342 266 325 0 chr12 90379408 90379577 -53406878 + MIR SINE MIR 17 240 -22 2266 79 0 10 chr12 90379681 90379984 -53406471 + AluSx SINE Alu 1 300 -12 211 140 40 0 chr12 90379984 90380034 -53406421 + GA-rich Low_complexity Low_complexity 1 52 0 588 73 0 0 chr12 90380042 90380124 -53406331 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 3385 109 9 4 chr12 90380124 90380650 -53405805 + L1MA2 LINE L1 5773 6304 0 1818 51 0 4 chr12 90381042 90381307 -53405148 + L1PA4 LINE L1 5920 6183 0 510 298 151 31 chr12 90381352 90381828 -53404627 + L1MC4 LINE L1 7509 8041 -1 628 206 30 0 chr12 90382544 90382675 -53403780 + FLAM_A SINE Alu 8 142 0 31 68 0 0 chr12 90383159 90383218 -53403237 + AT_rich Low_complexity Low_complexity 1 59 0 41 21 0 0 chr12 90383646 90383694 -53402761 + AT_rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr12 90383717 90383755 -53402700 + AT_rich Low_complexity Low_complexity 1 38 0 463 183 75 143 chr12 90383756 90384078 -53402377 + MLT-int LTR MaLR 1435 1734 -1 504 306 48 24 chr12 90384328 90384576 -53401879 + MLT1H1 LTR MaLR 302 555 0 28 0 0 0 chr12 90384753 90384781 -53401674 + AT_rich Low_complexity Low_complexity 1 28 0 6398 138 25 11 chr12 90385263 90386822 -53399633 + L1MA3 LINE L1 4729 6305 0 292 206 0 0 chr12 90386845 90386913 -53399542 - L1P LINE L1 -1101 5045 4978 5141 178 12 5 chr12 90386941 90388015 -53398440 + L1PA16 LINE L1 5080 6158 -8 23 33 0 0 chr12 90388053 90388083 -53398372 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 90388376 90388399 -53398056 + AT_rich Low_complexity Low_complexity 1 23 0 230 349 0 12 chr12 90388994 90389077 -53397378 + L2 LINE L2 3191 3272 0 36 40 0 0 chr12 90389816 90389866 -53396589 + AT_rich Low_complexity Low_complexity 1 50 0 348 327 85 0 chr12 90390048 90390213 -53396242 - MIR SINE MIR -38 224 46 764 57 14 121 chr12 90390348 90390489 -53395966 - L1PA7 LINE L1 -2 6152 6027 1444 223 3 15 chr12 90390564 90390880 -53395575 + MER47B DNA MER2_type 1 417 -1 231 277 59 10 chr12 90391346 90391447 -53395008 + MER5A DNA MER1_type 1 106 -83 392 301 6 30 chr12 90394315 90394481 -53391974 + T-rich Low_complexity Low_complexity 4 165 0 28 71 0 0 chr12 90395405 90395461 -53390994 + AT_rich Low_complexity Low_complexity 1 56 0 314 279 147 29 chr12 90395627 90395831 -53390624 + HAL1 LINE L1 1198 1425 -1082 335 303 28 41 chr12 90395955 90396100 -53390355 + L2 LINE L2 3171 3313 0 1681 77 0 0 chr12 90396291 90396511 -53389944 + AluY SINE Alu 85 304 -7 348 294 64 31 chr12 90396736 90397235 -53389220 - L1MDb LINE L1 -4890 1697 1146 21 0 0 0 chr12 90398599 90398620 -53387835 + AT_rich Low_complexity Low_complexity 1 21 0 614 135 0 0 chr12 90398832 90398921 -53387534 - MSTB1 LTR MaLR -15 417 329 1409 197 64 108 chr12 90398952 90399481 -53386974 + Charlie1b DNA MER1_type 2 507 -16 408 248 20 20 chr12 90399497 90399650 -53386805 + L1M4 LINE L1 2341 2493 -3653 370 267 127 40 chr12 90399752 90399902 -53386553 + MIR SINE MIR 26 188 -74 1575 176 0 53 chr12 90400211 90400513 -53385942 - AluJb SINE Alu -16 296 11 228 189 0 0 chr12 90400515 90400552 -53385903 - Alu SINE Alu -262 37 1 372 302 164 31 chr12 90401202 90401361 -53385094 + MIR3 SINE MIR 12 191 -17 32 26 0 0 chr12 90401859 90401898 -53384557 + AT_rich Low_complexity Low_complexity 1 39 0 239 234 32 117 chr12 90402002 90402096 -53384359 + L2 LINE L2 3225 3310 -3 528 291 8 0 chr12 90402214 90402331 -53384124 + MIR SINE MIR 18 135 -127 1344 152 93 62 chr12 90402343 90402491 -53383964 - AluJo SINE Alu -13 299 157 1959 151 70 41 chr12 90402491 90402907 -53383548 + MSTA LTR MaLR 1 428 0 1344 152 93 62 chr12 90402907 90403048 -53383407 - AluJo SINE Alu -155 157 1 287 258 0 0 chr12 90403057 90403123 -53383332 + MIR SINE MIR 150 215 -47 1865 113 32 29 chr12 90403562 90403908 -53382547 + L1MA1 LINE L1 5956 6302 0 25 51 0 0 chr12 90404791 90404830 -53381625 + AT_rich Low_complexity Low_complexity 1 39 0 369 306 131 29 chr12 90405315 90405697 -53380758 + L1MC4a LINE L1 2110 2530 -3616 288 323 12 12 chr12 90405798 90405962 -53380493 + L1MC4a LINE L1 2655 2818 -3328 2103 151 35 0 chr12 90406257 90406602 -53379853 + THE1B LTR MaLR 1 357 -7 486 291 163 3 chr12 90406614 90406920 -53379535 + L1MC4a LINE L1 5569 5923 -1885 223 270 45 0 chr12 90406931 90407020 -53379435 + (TA)n Simple_repeat Simple_repeat 1 93 0 304 336 143 31 chr12 90407035 90407386 -53379069 + L1MC4a LINE L1 6047 6436 -1372 181 0 33 33 chr12 90407622 90407652 -53378803 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 257 288 48 8 chr12 90407779 90407904 -53378551 + L1MC4a LINE L1 7041 7170 -638 308 26 0 0 chr12 90408120 90408158 -53378297 - L1PA4 LINE L1 -1114 5032 4995 7424 37 2 0 chr12 90408158 90409302 -53377153 + L1PA4 LINE L1 5038 6183 0 510 298 151 31 chr12 90409347 90409823 -53376632 + L1MC4 LINE L1 7509 8041 -1 1887 170 35 6 chr12 90410632 90410979 -53375476 + THE1B LTR MaLR 1 357 -7 486 291 163 3 chr12 90410991 90411297 -53375158 + L1MC4a LINE L1 5569 5923 -1885 223 270 45 0 chr12 90411308 90411397 -53375058 + (TA)n Simple_repeat Simple_repeat 2 94 0 181 0 33 33 chr12 90411999 90412029 -53374426 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 257 288 48 8 chr12 90412156 90412281 -53374174 + L1MC4a LINE L1 7041 7170 -638 308 26 0 0 chr12 90412497 90412535 -53373920 - L1PA5 LINE L1 -1114 5032 4995 7030 48 3 3 chr12 90412535 90413660 -53372795 + L1PA5 LINE L1 5038 6162 0 305 296 32 16 chr12 90413772 90413897 -53372558 + MIR3 SINE MIR 12 138 -70 2189 143 66 8 chr12 90413983 90414362 -53372093 - MSTA LTR MaLR -27 401 1 4651 153 11 10 chr12 90414362 90415134 -53371321 + L1PA16 LINE L1 5357 6132 -34 1178 141 249 51 chr12 90415134 90415447 -53371008 + THE1C LTR MaLR 1 375 0 4651 153 11 10 chr12 90415447 90415466 -53370989 + L1PA16 LINE L1 6132 6149 -17 2240 114 0 0 chr12 90415653 90415952 -53370503 - AluSx SINE Alu -13 299 1 21 0 0 0 chr12 90416048 90416069 -53370386 + AT_rich Low_complexity Low_complexity 1 21 0 2344 88 0 0 chr12 90416858 90417153 -53369302 + AluSc SINE Alu 1 295 -14 268 311 66 13 chr12 90417547 90417698 -53368757 + L1ME LINE L1 738 896 -5520 257 259 116 34 chr12 90417954 90418288 -53368167 + L1MEd LINE L1 1235 1474 -4850 213 39 0 0 chr12 90418352 90418378 -53368077 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1916 140 16 7 chr12 90418573 90418881 -53367574 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr12 90418914 90418942 -53367513 + AT_rich Low_complexity Low_complexity 1 28 0 583 312 37 53 chr12 90419631 90420085 -53366370 + L1ME LINE L1 908 1366 -5050 21 36 0 0 chr12 90420093 90420121 -53366334 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr12 90420175 90420217 -53366238 + AT_rich Low_complexity Low_complexity 1 42 0 238 221 29 29 chr12 90420256 90420324 -53366131 + L1ME LINE L1 1486 1553 -4863 275 288 136 0 chr12 90420537 90420669 -53365786 + L1ME LINE L1 1854 2003 -4604 397 277 57 73 chr12 90420721 90421068 -53365387 + L1ME LINE L1 2270 2612 -3995 1726 107 97 28 chr12 90421068 90421357 -53365098 + AluSg SINE Alu 1 309 -1 397 277 57 73 chr12 90421357 90421377 -53365078 + L1ME LINE L1 2612 2631 -3976 542 279 61 5 chr12 90421381 90421578 -53364877 + Charlie1b DNA MER1_type 2 209 -314 687 67 9 67 chr12 90421731 90421836 -53364619 - L1PA7 LINE L1 -29 6125 6027 1413 229 3 15 chr12 90421911 90422227 -53364228 + MER47B DNA MER2_type 1 417 -1 231 277 59 10 chr12 90422693 90422794 -53363661 + MER5A DNA MER1_type 1 106 -83 392 301 6 30 chr12 90425662 90425828 -53360627 + T-rich Low_complexity Low_complexity 4 165 0 28 71 0 0 chr12 90426752 90426808 -53359647 + AT_rich Low_complexity Low_complexity 1 56 0 314 279 147 29 chr12 90426974 90427178 -53359277 + HAL1 LINE L1 1198 1425 -1082 335 303 28 41 chr12 90427302 90427447 -53359008 + L2 LINE L2 3171 3313 0 1681 77 0 0 chr12 90427638 90427858 -53358597 + AluY SINE Alu 85 304 -7 348 294 64 31 chr12 90428083 90428582 -53357873 - L1MDb LINE L1 -4890 1697 1146 21 0 0 0 chr12 90429946 90429967 -53356488 + AT_rich Low_complexity Low_complexity 1 21 0 2079 170 54 27 chr12 90430179 90430585 -53355870 - MSTB1 LTR MaLR -15 417 1 204 361 142 32 chr12 90430729 90431139 -53355316 - L2 LINE L2 -533 2781 2327 1032 166 16 5 chr12 90431322 90431509 -53354946 + MSTB LTR MaLR 13 201 -225 328 103 0 35 chr12 90431508 90431566 -53354889 + MSTB LTR MaLR 370 425 -3 * 2447 71 0 0 chr12 90432974 90433284 -53353171 - AluY SINE Alu -1 310 1 4657 44 0 0 chr12 90434400 90434967 -53351488 - L1PA5 LINE L1 -3 6151 5585 26 0 0 0 chr12 90436630 90436656 -53349799 + AT_rich Low_complexity Low_complexity 1 26 0 39 0 0 0 chr12 90437225 90437264 -53349191 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 90437310 90437331 -53349124 + AT_rich Low_complexity Low_complexity 1 21 0 768 279 133 58 chr12 90437918 90438424 -53348031 + MLT1F LTR MaLR 18 555 0 33 80 0 0 chr12 90438912 90438987 -53347468 + AT_rich Low_complexity Low_complexity 1 75 0 203 188 36 36 chr12 90439026 90439138 -53347317 + (TAA)n Simple_repeat Simple_repeat 1 112 0 * 312 174 76 28 chr12 90439080 90439224 -53347231 + (TTAAA)n Simple_repeat Simple_repeat 2 152 0 192 77 0 0 chr12 90439301 90439327 -53347128 + (ATTAG)n Simple_repeat Simple_repeat 5 30 0 1022 292 163 12 chr12 90439577 90440325 -53346130 + L2 LINE L2 2413 3313 0 331 355 59 15 chr12 90442659 90442862 -53343593 + L1 LINE L1 4795 5006 -1140 30 45 0 0 chr12 90443106 90443150 -53343305 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr12 90443482 90443510 -53342945 + AT_rich Low_complexity Low_complexity 1 28 0 275 157 6 229 chr12 90443650 90443816 -53342639 - MER112 DNA MER1_type -126 134 6 223 263 0 40 chr12 90443887 90443963 -53342492 + CT-rich Low_complexity Low_complexity 2 74 0 237 182 0 0 chr12 90444024 90444079 -53342376 + A-rich Low_complexity Low_complexity 1 55 0 1179 168 60 35 chr12 90444309 90444625 -53341830 - MER33 DNA MER1_type 0 324 1 182 108 54 0 chr12 90444803 90444840 -53341615 + GA-rich Low_complexity Low_complexity 3 41 0 216 158 0 0 chr12 90445617 90445655 -53340800 + A-rich Low_complexity Low_complexity 1 38 0 30 59 0 0 chr12 90445857 90445908 -53340547 + AT_rich Low_complexity Low_complexity 1 51 0 860 222 0 0 chr12 90446286 90446448 -53340007 - FRAM SINE Alu -2 164 3 538 238 8 0 chr12 90447671 90447793 -53338662 - MIR SINE MIR -35 227 105 392 289 0 10 chr12 90447815 90447919 -53338536 + MIR SINE MIR 49 151 -111 242 285 24 73 chr12 90448321 90448444 -53338011 + L2 LINE L2 2932 3048 -224 226 251 198 59 chr12 90449704 90449891 -53336564 + MLT1J LTR MaLR 125 337 -174 303 288 171 14 chr12 90450914 90451060 -53335395 - L2 LINE L2 0 3272 3104 23 0 0 0 chr12 90451220 90451243 -53335212 + AT_rich Low_complexity Low_complexity 1 23 0 1590 111 41 11 chr12 90451984 90452255 -53334200 + L1MA5A LINE L1 6019 6297 0 593 268 14 7 chr12 90452322 90452464 -53333991 - L2 LINE L2 0 3313 3171 611 271 54 20 chr12 90452701 90452904 -53333551 + MER63A DNA MER1_type 1 210 0 989 158 35 30 chr12 90454099 90454302 -53332153 - L1PA16 LINE L1 0 6166 5963 1957 103 14 7 chr12 90455735 90456016 -53330439 + AluSq SINE Alu 1 283 -30 2042 114 0 13 chr12 90456120 90456419 -53330036 + AluSx SINE Alu 2 296 -16 2132 108 7 3 chr12 90456767 90457064 -53329391 - AluSx SINE Alu -14 298 1 28 61 0 0 chr12 90457627 90457676 -53328779 + AT_rich Low_complexity Low_complexity 1 49 0 223 135 77 39 chr12 90458977 90459029 -53327426 + MIR SINE MIR 122 175 -87 285 75 0 0 chr12 90459313 90459353 -53327102 + (TG)n Simple_repeat Simple_repeat 1 40 0 482 263 88 31 chr12 90459588 90459782 -53326673 - MIR SINE MIR -27 235 31 199 301 32 32 chr12 90460362 90460455 -53326000 + MIR SINE MIR 101 193 -69 22 0 0 0 chr12 90460461 90460483 -53325972 + AT_rich Low_complexity Low_complexity 1 22 0 1385 205 155 27 chr12 90460595 90460983 -53325472 - MER39 LTR ERV1 -7 680 261 566 200 80 16 chr12 90460961 90461086 -53325369 - MER39 LTR ERV1 -574 133 1 * 695 234 130 19 chr12 90461094 90461402 -53325053 - LTR37A LTR ERV1 -4 422 81 273 362 48 0 chr12 90462270 90462375 -53324080 + MIR SINE MIR 43 152 -110 912 256 70 4 chr12 90462634 90462861 -53323594 - MIR SINE MIR -16 246 5 21 0 0 0 chr12 90464183 90464204 -53322251 + AT_rich Low_complexity Low_complexity 1 21 0 2786 161 61 8 chr12 90464774 90465296 -53321159 + MER44D DNA MER2_type 1 605 0 221 247 0 12 chr12 90465892 90465973 -53320482 + (TA)n Simple_repeat Simple_repeat 1 80 0 408 40 0 0 chr12 90465974 90466024 -53320431 + (TG)n Simple_repeat Simple_repeat 2 51 0 347 275 18 73 chr12 90466131 90466240 -53320215 - L2 LINE L2 -1 3271 3169 22 56 0 0 chr12 90467237 90467273 -53319182 + AT_rich Low_complexity Low_complexity 1 36 0 193 312 21 43 chr12 90468393 90468486 -53317969 - L2 LINE L2 0 3272 3182 1327 273 132 59 chr12 90468702 90469551 -53316904 - L2 LINE L2 -2 3311 2379 1435 225 38 48 chr12 90472191 90472474 -53313981 + MSTD LTR MaLR 1 280 -116 2294 99 7 0 chr12 90472474 90472777 -53313678 - AluSp SINE Alu -8 305 1 1435 225 38 48 chr12 90472777 90472893 -53313562 + MSTD LTR MaLR 280 396 0 239 241 0 63 chr12 90472985 90473064 -53313391 + Zaphod DNA AcHobo 67 140 -3891 2404 222 34 35 chr12 90473123 90473686 -53312769 + MER68 LTR ERV1 1 562 0 5229 162 22 7 chr12 90473885 90474972 -53311483 - L1PA16 LINE L1 -21 6145 5045 1685 149 98 21 chr12 90474972 90475308 -53311147 - THE1C LTR MaLR 0 375 14 9366 125 26 52 chr12 90475323 90476945 -53309510 - THE1C-int LTR MaLR 0 1580 1 1672 129 78 70 chr12 90476945 90477317 -53309138 - THE1C LTR MaLR 0 375 1 2948 227 8 11 chr12 90477317 90478048 -53308407 - L1 LINE L1 -1097 5049 4321 1685 185 0 16 chr12 90478049 90478330 -53308125 + AluSx SINE Alu 1 278 -34 189 0 0 0 chr12 90478330 90478351 -53308104 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1685 185 0 16 chr12 90478351 90478383 -53308072 + AluSx SINE Alu 278 309 -3 575 184 46 0 chr12 90478394 90478503 -53307952 + AluJb SINE Alu 1 114 -198 2581 104 0 3 chr12 90478503 90478859 -53307596 - THE1A LTR MaLR 0 355 1 680 12 24 0 chr12 90478864 90478948 -53307507 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 482 209 0 35 chr12 90478948 90479063 -53307392 - L1 LINE L1 -1836 4310 4200 831 365 11 19 chr12 90479064 90479431 -53307024 - L1PA13 LINE L1 -6423 364 1 528 304 57 35 chr12 90479613 90479843 -53306612 + MIR SINE MIR 2 236 -26 3214 164 80 45 chr12 90480507 90481204 -53305251 - MER72 LTR ERV1 0 722 1 982 294 53 62 chr12 90482124 90482669 -53303786 - MER21B LTR ERV1 -127 736 197 1706 211 6 9 chr12 90484076 90484426 -53302029 - MER4D LTR ERV1 -8 895 547 354 198 5 32 chr12 90484424 90484557 -53301898 - MER4E LTR ERV1 -588 284 49 * 1408 151 19 77 chr12 90484530 90484708 -53301747 - MER49 LTR ERV1 -629 294 140 1955 122 0 46 chr12 90484708 90485035 -53301420 - AluSq SINE Alu 0 313 2 1408 151 19 77 chr12 90485035 90485168 -53301287 - MER49 LTR ERV1 -783 140 1 3267 154 5 55 chr12 90485172 90485807 -53300648 - LTR26 LTR ERV1 0 603 1 247 379 32 32 chr12 90486014 90486233 -53300222 - MLT1K LTR MaLR -350 238 20 436 167 10 10 chr12 90486318 90486420 -53300035 + CT-rich Low_complexity Low_complexity 1 102 0 318 288 12 88 chr12 90487537 90487697 -53298758 - L1MEd LINE L1 -5017 1102 955 670 302 104 18 chr12 90489369 90489707 -53296748 + MLT1J LTR MaLR 1 367 -144 1604 182 16 19 chr12 90489828 90489999 -53296456 - AluJo SINE Alu -5 307 136 279 0 0 0 chr12 90489999 90490030 -53296425 + (TA)n Simple_repeat Simple_repeat 1 31 0 1604 182 16 19 chr12 90490030 90490166 -53296289 - AluJo SINE Alu -176 136 1 424 219 207 35 chr12 90490729 90490898 -53295557 - MIR SINE MIR -57 205 8 1924 143 10 0 chr12 90491138 90491446 -53295009 - AluSx SINE Alu -1 311 1 306 332 48 42 chr12 90491789 90492002 -53294453 + MIR SINE MIR 35 251 -11 673 283 107 12 chr12 90492605 90492849 -53293606 - MLT1J LTR MaLR -244 267 1 282 293 61 50 chr12 90493346 90493445 -53293010 + L2 LINE L2 3210 3309 -4 225 0 0 0 chr12 90494151 90494176 -53292279 + (TA)n Simple_repeat Simple_repeat 2 26 0 381 336 29 29 chr12 90495918 90496058 -53290397 + MIR3 SINE MIR 20 159 -49 247 196 23 23 chr12 90496096 90496269 -53290186 + (TA)n Simple_repeat Simple_repeat 1 173 0 281 159 0 0 chr12 90496629 90496673 -53289782 + MIR SINE MIR 103 146 -116 854 201 0 17 chr12 90497027 90497201 -53289254 + AluJb SINE Alu 133 303 -9 24 67 0 0 chr12 90497600 90497645 -53288810 + AT_rich Low_complexity Low_complexity 1 45 0 1376 207 38 3 chr12 90498982 90499272 -53287183 + AluJo SINE Alu 1 300 -12 346 256 13 0 chr12 90499657 90499735 -53286720 - L2 LINE L2 -31 3241 3163 265 333 52 68 chr12 90499998 90500190 -53286265 - L2 LINE L2 -445 2869 2681 1970 196 41 10 chr12 90500502 90500915 -53285540 + MSTB LTR MaLR 1 426 0 2411 31 41 0 chr12 90501098 90501388 -53285067 + AluY SINE Alu 1 302 -9 255 257 124 72 chr12 90501619 90501926 -53284529 + L1ME LINE L1 5513 5835 -286 25 65 0 0 chr12 90502005 90502051 -53284404 + AT_rich Low_complexity Low_complexity 1 46 0 30 59 0 0 chr12 90503009 90503060 -53283395 + AT_rich Low_complexity Low_complexity 1 51 0 32 98 0 0 chr12 90503162 90503264 -53283191 + AT_rich Low_complexity Low_complexity 1 102 0 2135 219 83 50 chr12 90503526 90504203 -53282252 - L1ME2 LINE L1 -5 6159 5461 263 365 47 24 chr12 90504602 90504772 -53281683 + L2 LINE L2 33 206 -3108 519 219 20 41 chr12 90504806 90504952 -53281503 + L2 LINE L2 3167 3309 -4 3342 220 109 51 chr12 90505008 90506068 -53280387 - LTR28 LTR ERV1 0 1735 1 228 238 250 85 chr12 90506395 90506559 -53279896 - MIR SINE MIR -70 192 2 186 308 143 22 chr12 90507313 90507404 -53279051 - L2 LINE L2 -1886 1428 1327 625 289 118 39 chr12 90508726 90509166 -53277289 + MLT1H LTR MaLR 75 549 0 485 337 21 21 chr12 90510690 90510877 -53275578 + MER5A DNA MER1_type 1 187 -2 303 254 0 0 chr12 90510881 90510944 -53275511 - MIR3 SINE MIR -49 159 97 323 341 114 43 chr12 90512738 90512949 -53273506 - MIR SINE MIR -11 251 26 487 307 57 0 chr12 90513151 90513291 -53273164 + MIR SINE MIR 21 168 -94 187 128 170 0 chr12 90513345 90513392 -53273063 + MIR SINE MIR 179 233 -29 266 373 8 32 chr12 90513620 90513746 -53272709 - L2 LINE L2 0 3272 3150 6267 72 33 12 chr12 90514453 90515680 -53270775 + L1PA8 LINE L1 4927 6172 0 212 309 12 83 chr12 90516508 90516592 -53269863 - L2 LINE L2 -9 3263 3186 354 219 7 119 chr12 90516669 90516820 -53269635 + MLT1E LTR MaLR 4 137 -456 1349 197 0 47 chr12 90516827 90517101 -53269354 - ERVL LTR ERVL -1668 4096 3836 334 66 0 131 chr12 90517108 90517169 -53269286 - MLT2C1 LTR ERVL -4 393 349 1378 176 72 93 chr12 90517204 90517583 -53268872 - MLT2D LTR ERVL -47 468 5 435 157 134 8 chr12 90517609 90517729 -53268726 - L1ME LINE L1 -466 5698 5569 4726 249 42 42 chr12 90518964 90520554 -53265901 + L1M4 LINE L1 14 1603 -4939 958 222 9 38 chr12 90520557 90520769 -53265686 - AluJo SINE Alu -22 290 85 5890 244 64 61 chr12 90520772 90521899 -53264556 + L1M4 LINE L1 1747 2870 -3774 2159 101 34 0 chr12 90521899 90522195 -53264260 - AluSq SINE Alu -7 306 1 5890 244 64 61 chr12 90522195 90524014 -53262441 + L1M4 LINE L1 2870 4680 -1964 1824 94 0 0 chr12 90524014 90524247 -53262208 + AluSc SINE Alu 1 233 -76 5890 244 64 61 chr12 90524247 90524394 -53262061 + L1M4 LINE L1 4680 4825 -1819 765 179 0 0 chr12 90524402 90524525 -53261930 + FAM SINE Alu 20 142 -43 216 0 0 0 chr12 90524538 90524562 -53261893 + (CA)n Simple_repeat Simple_repeat 1 24 0 283 247 48 27 chr12 90524579 90524725 -53261730 + L1M4 LINE L1 4814 4962 -1682 209 321 16 74 chr12 90524860 90525050 -53261405 - L2 LINE L2 -1017 2297 2119 461 347 69 36 chr12 90525569 90526045 -53260410 - L2 LINE L2 -561 2753 2262 376 180 234 0 chr12 90526857 90526985 -53259470 + MER46C DNA MER2_type 2 159 -179 250 294 44 0 chr12 90527513 90527581 -53258874 - MLT1L LTR MaLR -341 274 204 266 255 216 85 chr12 90528189 90528342 -53258113 - MER5B DNA MER1_type 0 178 6 23 78 0 0 chr12 90528836 90528887 -53257568 + AT_rich Low_complexity Low_complexity 1 51 0 23 86 0 0 chr12 90529391 90529449 -53257006 + AT_rich Low_complexity Low_complexity 1 58 0 534 255 0 5 chr12 90530114 90530319 -53256136 + GA-rich Low_complexity Low_complexity 1 204 0 5413 144 20 20 chr12 90530583 90531865 -53254590 - L1PA15 LINE L1 0 6165 4886 212 189 0 0 chr12 90532040 90532077 -53254378 + T-rich Low_complexity Low_complexity 1 37 0 1106 139 0 0 chr12 90532130 90532295 -53254160 + AluSg/x SINE Alu 143 307 -3 2416 96 0 0 chr12 90532332 90532644 -53253811 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 90533101 90533122 -53253333 + AT_rich Low_complexity Low_complexity 1 21 0 2441 55 0 7 chr12 90533537 90533847 -53252608 - AluY SINE Alu -3 308 1 277 119 0 0 chr12 90534755 90534797 -53251658 + U5 snRNA snRNA 3 44 -72 22 0 0 0 chr12 90535142 90535164 -53251291 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 90537001 90537024 -53249431 + AT_rich Low_complexity Low_complexity 1 23 0 1001 304 39 57 chr12 90537696 90537961 -53248494 - L2 LINE L2 -1 3312 3044 1901 120 7 18 chr12 90537961 90538097 -53248358 + AluSx SINE Alu 1 137 -175 2206 111 0 0 chr12 90538097 90538395 -53248060 + AluSg SINE Alu 1 298 -12 1901 120 7 18 chr12 90538395 90538542 -53247913 + AluSx SINE Alu 137 281 -31 262 0 53 0 chr12 90538551 90538589 -53247866 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 1001 304 39 57 chr12 90538589 90539110 -53247345 - L2 LINE L2 -277 3036 2526 3421 108 8 6 chr12 90539370 90539898 -53246557 - L1MA2 LINE L1 0 7723 7192 588 73 0 0 chr12 90539898 90539980 -53246475 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 211 140 40 0 chr12 90539988 90540038 -53246417 + CT-rich Low_complexity Low_complexity 1 52 0 719 124 0 0 chr12 90540038 90540143 -53246312 - AluSg/x SINE Alu -12 297 193 1425 124 0 5 chr12 90540144 90540362 -53246093 - L1MA2 LINE L1 -520 7203 6987 * 6016 184 9 0 chr12 90540353 90541507 -53244948 - L1MA2 LINE L1 -1325 6240 5076 * 11560 163 76 98 chr12 90541489 90544281 -53242174 - L1MA2 LINE L1 -4808 2757 25 21 0 0 0 chr12 90544430 90544451 -53242004 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr12 90544989 90545034 -53241421 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr12 90546725 90546760 -53239695 + AT_rich Low_complexity Low_complexity 1 35 0 2096 122 27 0 chr12 90546782 90547077 -53239378 + AluSx SINE Alu 1 303 -9 194 273 15 30 chr12 90547508 90547574 -53238881 + L2 LINE L2 3249 3313 0 2005 121 0 0 chr12 90547791 90548071 -53238384 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr12 90548071 90548094 -53238361 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2829 63 3 0 chr12 90548138 90548502 -53237953 - L1PA7 LINE L1 0 6154 5790 286 0 0 0 chr12 90548514 90548556 -53237899 - L1PA2 LINE L1 0 6155 6114 267 269 0 28 chr12 90548562 90548670 -53237785 + CT-rich Low_complexity Low_complexity 3 107 0 232 374 16 8 chr12 90548891 90549014 -53237441 + MIR3 SINE MIR 53 176 -32 21 0 0 0 chr12 90549340 90549361 -53237094 + AT_rich Low_complexity Low_complexity 1 21 0 5768 145 47 8 chr12 90549499 90550467 -53235988 - HSMAR2 DNA Mariner -17 1285 281 536 110 24 0 chr12 90550469 90550551 -53235904 - HSMAR2 DNA Mariner -1216 86 3 768 271 58 5 chr12 90550552 90550759 -53235696 - MIR SINE MIR -30 232 15 2547 215 23 22 chr12 90551033 90551633 -53234822 - MER7C DNA MER2_type -1 601 1 261 0 0 0 chr12 90552057 90552086 -53234369 + (TA)n Simple_repeat Simple_repeat 2 30 0 1530 219 7 0 chr12 90552095 90552387 -53234068 - AluJb SINE Alu -18 294 1 1197 264 62 42 chr12 90553302 90553919 -53232536 + L1ME2 LINE L1 5524 6152 -12 2206 252 69 45 chr12 90554136 90554874 -53231581 - MER21B LTR ERV1 -107 756 1 303 250 54 9 chr12 90554879 90554991 -53231464 + L1MC4 LINE L1 7924 8040 -2 714 249 128 11 chr12 90554999 90555463 -53230992 - L1MC4 LINE L1 -796 7246 6685 60 53 0 0 chr12 90555471 90555566 -53230889 + AT_rich Low_complexity Low_complexity 1 95 0 303 140 0 0 chr12 90555598 90555648 -53230807 + (TA)n Simple_repeat Simple_repeat 2 51 0 237 266 16 0 chr12 90555651 90555715 -53230740 - L1MC4 LINE L1 -1072 6970 6906 230 191 0 21 chr12 90556469 90556516 -53229939 + GA-rich Low_complexity Low_complexity 3 48 0 335 335 43 6 chr12 90556516 90556680 -53229775 + L1M4 LINE L1 3052 3221 -2925 1543 120 4 66 chr12 90557277 90557536 -53228919 + AluSx SINE Alu 24 266 -46 2003 204 22 0 chr12 90557550 90557951 -53228504 - MER41D LTR ERV1 -147 410 1 263 340 10 82 chr12 90558349 90558543 -53227912 + MLT1I LTR MaLR 108 287 -122 1329 218 11 29 chr12 90558701 90558981 -53227474 + MLT1A1 LTR MaLR 91 365 0 1788 184 3 0 chr12 90559928 90560232 -53226223 + MER44D DNA MER2_type 103 407 -298 877 189 0 34 chr12 90560233 90560408 -53226047 + FRAM SINE Alu 1 169 -7 1771 183 28 9 chr12 90560410 90560733 -53225722 + MER44D DNA MER2_type 405 605 0 410 222 0 8 chr12 90561443 90561560 -53224895 + GA-rich Low_complexity Low_complexity 2 117 0 26 30 0 0 chr12 90561582 90561615 -53224840 + AT_rich Low_complexity Low_complexity 1 33 0 2148 125 3 0 chr12 90561624 90561929 -53224526 + AluSq SINE Alu 1 306 -7 241 125 0 25 chr12 90562249 90562289 -53224166 - MER57A LTR ERV1 -70 333 295 507 311 96 28 chr12 90562418 90562814 -53223641 + L1 LINE L1 3076 3498 -2648 1470 181 0 113 chr12 90562820 90562952 -53223503 + AluJb SINE Alu 2 147 -155 2147 92 21 7 chr12 90562952 90563234 -53223221 + AluSg SINE Alu 1 286 -24 1470 181 0 113 chr12 90563234 90563437 -53223018 + AluJb SINE Alu 147 299 -3 345 252 27 32 chr12 90563625 90563806 -53222649 + L1 LINE L1 3721 3902 -2244 185 356 0 0 chr12 90563835 90563894 -53222561 + L2 LINE L2 2886 2944 -370 326 286 58 39 chr12 90563924 90564078 -53222377 + L2 LINE L2 2930 3086 -227 221 276 98 63 chr12 90565283 90565457 -53220998 + MIR SINE MIR 83 262 0 318 322 106 28 chr12 90565832 90566012 -53220443 + MIR SINE MIR 5 198 -64 566 232 73 0 chr12 90567118 90567269 -53219186 - MIR SINE MIR -38 224 63 477 146 12 0 chr12 90568088 90568170 -53218285 - AluSp/q SINE Alu -1 312 230 497 171 154 0 chr12 90568294 90568411 -53218044 + MLT1C-int LTR MaLR 1237 1371 0 724 234 154 34 chr12 90568413 90568829 -53217626 + MLT1C LTR MaLR 3 384 -6 558 308 108 25 chr12 90568876 90569237 -53217218 + L2 LINE L2 2922 3312 -1 210 246 0 0 chr12 90620531 90620592 -53165863 + (CA)n Simple_repeat Simple_repeat 1 61 0 3030 103 24 20 chr12 90622384 90622417 -53164038 - LTR46 LTR ERV1 0 460 429 234 0 0 0 chr12 90622417 90622443 -53164012 + (CA)n Simple_repeat Simple_repeat 2 27 0 3030 103 24 20 chr12 90622443 90622867 -53163588 - LTR46 LTR ERV1 -31 429 1 893 249 39 30 chr12 90624145 90624378 -53162077 + L1MD1 LINE L1 5445 5679 -2129 234 0 0 0 chr12 90624722 90624748 -53161707 + (TA)n Simple_repeat Simple_repeat 2 27 0 28 0 0 0 chr12 90624797 90624825 -53161630 + AT_rich Low_complexity Low_complexity 1 28 0 3897 238 55 13 chr12 90625081 90625976 -53160479 - L1MD1 LINE L1 -10 6232 5376 2383 72 3 0 chr12 90625976 90626281 -53160174 - AluY SINE Alu -4 307 2 3897 238 55 13 chr12 90626281 90627335 -53159120 - L1MD1 LINE L1 -866 5376 4203 915 197 11 0 chr12 90627329 90627517 -53158938 + L1MD1 LINE L1 5894 6083 -159 * 265 286 0 0 chr12 90627595 90627651 -53158804 - MER2 DNA MER2_type 0 345 290 367 247 17 2 chr12 90627671 90627771 -53158684 - MER2 DNA MER2_type -137 102 1 2904 259 38 3 chr12 90627774 90628624 -53157831 - L1MD1 LINE L1 -1984 4162 3284 401 252 96 137 chr12 90628879 90629348 -53157107 - MLT1H LTR MaLR 0 549 100 21 82 0 0 chr12 90629423 90629472 -53156983 + AT_rich Low_complexity Low_complexity 1 49 0 1198 272 99 37 chr12 90629478 90629912 -53156543 + MLT1D LTR MaLR 20 480 -25 978 63 0 0 chr12 90629951 90630078 -53156377 - L1PA5 LINE L1 -2 6152 6026 253 254 119 30 chr12 90630221 90630355 -53156100 - L1MD3 LINE L1 -18 7977 7832 2361 228 54 28 chr12 90630360 90631041 -53155414 - L1MD2 LINE L1 -211 6148 5450 23 0 0 0 chr12 90631717 90631740 -53154715 + AT_rich Low_complexity Low_complexity 1 23 0 818 320 25 3 chr12 90631838 90632203 -53154252 + L1M4 LINE L1 3239 3611 -2535 317 231 0 22 chr12 90632258 90632349 -53154106 + L1MC4 LINE L1 6615 6703 -1339 278 230 23 0 chr12 90632375 90632462 -53153993 - L1MC4 LINE L1 -1339 6703 6615 2211 261 63 21 chr12 90632469 90633429 -53153026 + L1M4 LINE L1 3709 4709 -1437 532 312 89 56 chr12 90634038 90634519 -53151936 + MLT1H LTR MaLR 53 549 0 587 271 53 0 chr12 90634714 90634847 -53151608 - MIR SINE MIR -98 164 25 568 294 97 41 chr12 90634865 90634984 -53151471 - HAL1b LINE L1 -321 1027 916 1817 145 14 3 chr12 90634984 90635291 -53151164 - AluSx SINE Alu 0 310 1 568 294 97 41 chr12 90635291 90635708 -53150747 - HAL1b LINE L1 -432 916 460 1741 164 0 25 chr12 90636125 90636442 -53150013 - AluSx SINE Alu -3 309 1 683 232 106 35 chr12 90636827 90637025 -53149430 - MER58A DNA MER1_type -1 223 12 395 275 0 11 chr12 90637025 90637116 -53149339 - MER58A DNA MER1_type -17 90 1 2352 98 0 0 chr12 90637706 90638011 -53148444 + AluSg1 SINE Alu 3 307 -2 270 313 45 67 chr12 90638908 90639042 -53147413 - MIR SINE MIR -76 132 2 480 18 0 0 chr12 90639324 90639381 -53147074 + U2 snRNA snRNA 1 57 -131 198 326 34 22 chr12 90640148 90640237 -53146218 + L2 LINE L2 3168 3257 -56 1492 187 27 20 chr12 90640258 90640558 -53145897 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr12 90641192 90641214 -53145241 + AT_rich Low_complexity Low_complexity 1 22 0 670 335 16 4 chr12 90643476 90643721 -53142734 + MIR SINE MIR 4 251 -11 1549 173 93 75 chr12 90643725 90643830 -53142625 - MER39 LTR ERV1 -88 619 517 2276 84 0 13 chr12 90643830 90644140 -53142315 - AluY SINE Alu -3 308 3 1549 173 93 75 chr12 90644140 90644573 -53141882 - MER39 LTR ERV1 -190 517 28 3220 173 5 22 chr12 90644583 90645054 -53141401 - L1PB3 LINE L1 -5 6149 5689 1576 119 3 119 chr12 90645054 90645407 -53141048 - AluJb SINE Alu 0 312 1 3220 173 5 22 chr12 90645407 90645532 -53140923 - L1PB3 LINE L1 -465 5689 5563 637 215 0 0 chr12 90646286 90646416 -53140039 + AluJb SINE Alu 179 308 -4 24 0 0 0 chr12 90648333 90648357 -53138098 + AT_rich Low_complexity Low_complexity 1 24 0 753 273 99 3 chr12 90648374 90648667 -53137788 - MER33 DNA MER1_type -1 323 3 2167 126 0 0 chr12 90648745 90649054 -53137401 + AluSx SINE Alu 1 309 -3 216 135 0 0 chr12 90650380 90650417 -53136038 + (TAG)n Simple_repeat Simple_repeat 1 37 0 480 349 15 35 chr12 90650487 90650748 -53135707 - MIR SINE MIR -6 256 1 23 0 0 0 chr12 90650827 90650850 -53135605 + AT_rich Low_complexity Low_complexity 1 23 0 236 291 59 83 chr12 90651467 90651721 -53134734 + L3 LINE CR1 722 969 -608 519 317 55 42 chr12 90651918 90652230 -53134225 + L3 LINE CR1 1248 1563 -14 272 325 94 38 chr12 90652269 90652429 -53134026 - MIR SINE MIR -42 220 52 625 240 48 43 chr12 90652737 90652945 -53133510 - L2 LINE L2 0 3313 3105 268 290 168 9 chr12 90653460 90653567 -53132888 - L2 LINE L2 -6 3266 3143 1958 116 10 3 chr12 90653727 90654021 -53132434 + AluSx SINE Alu 1 296 -16 211 331 58 25 chr12 90654069 90654190 -53132265 - L2 LINE L2 -224 3048 2924 211 169 0 34 chr12 90654659 90654718 -53131737 + A-rich Low_complexity Low_complexity 4 60 0 28 0 0 0 chr12 90655131 90655159 -53131296 + AT_rich Low_complexity Low_complexity 1 28 0 633 299 77 69 chr12 90655377 90655842 -53130613 - L2 LINE L2 0 3313 2845 473 308 43 0 chr12 90655997 90656182 -53130273 - L2 LINE L2 -845 2469 2277 413 236 174 0 chr12 90657306 90657438 -53129017 + MIR SINE MIR 60 213 -49 310 285 83 76 chr12 90657517 90657661 -53128794 - MIR SINE MIR -103 159 15 872 140 0 0 chr12 90658798 90658941 -53127514 - L1MA4 LINE L1 -7 6293 6151 21 36 0 0 chr12 90659600 90659628 -53126827 + AT_rich Low_complexity Low_complexity 1 28 0 1954 119 3 23 chr12 90659654 90659956 -53126499 - AluSg SINE Alu -14 296 1 249 199 46 30 chr12 90661460 90661591 -53124864 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 2511 48 0 19 chr12 90662339 90662649 -53123806 - AluY SINE Alu -7 304 1 219 233 0 0 chr12 90662734 90662777 -53123678 + (TG)n Simple_repeat Simple_repeat 2 44 0 409 309 66 17 chr12 90663336 90663517 -53122938 + MIR SINE MIR 11 200 -62 22 70 0 0 chr12 90664532 90664575 -53121880 + AT_rich Low_complexity Low_complexity 1 43 0 382 335 26 20 chr12 90665110 90665262 -53121193 - MIR SINE MIR -108 154 2 3824 155 45 9 chr12 90665843 90666533 -53119922 + L1MC1 LINE L1 5608 6322 -11 224 333 111 15 chr12 90666899 90667034 -53119421 - MIR SINE MIR -12 250 103 1665 141 0 0 chr12 90667207 90667449 -53119006 + AluSq SINE Alu 1 242 -71 271 63 0 95 chr12 90667620 90667683 -53118772 + L1MC5 LINE L1 7618 7674 -287 25 51 0 0 chr12 90667835 90667874 -53118581 + AT_rich Low_complexity Low_complexity 1 39 0 1482 204 7 4 chr12 90668745 90669024 -53117431 + AluJo SINE Alu 1 280 -32 183 100 0 0 chr12 90669032 90669062 -53117393 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 351 152 61 15 chr12 90669326 90669392 -53117063 - MER46C DNA MER2_type -11 327 259 659 239 87 30 chr12 90669410 90669741 -53116714 - MLT1H LTR MaLR -9 546 120 281 175 32 0 chr12 90672256 90672319 -53114136 - L1MA9 LINE L1 -30 6282 6218 2450 174 104 32 chr12 90672320 90672916 -53113539 - L1MA9 LINE L1 -29 6283 5645 19079 182 39 13 chr12 90673518 90675327 -53111128 + L1MA2 LINE L1 13 1773 -5792 259 43 22 22 chr12 90675327 90675373 -53111082 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 19079 182 39 13 chr12 90675373 90679148 -53107307 + L1MA2 LINE L1 1773 5744 -1821 881 190 0 0 chr12 90679149 90679323 -53107132 + L1MA2 LINE L1 6078 6251 -1314 4598 135 18 20 chr12 90679323 90680106 -53106349 + L1MA2 LINE L1 6895 7681 -42 2033 176 8 24 chr12 90680106 90680476 -53105979 - THE1B LTR MaLR 0 364 1 4598 135 18 20 chr12 90680476 90680519 -53105936 + L1MA2 LINE L1 7681 7723 0 2193 157 8 13 chr12 90680811 90681188 -53105267 - THE1C LTR MaLR 0 375 1 259 297 20 30 chr12 90681192 90681293 -53105162 + MER5B DNA MER1_type 76 175 -3 2260 171 40 27 chr12 90681337 90681788 -53104667 + MSTB2 LTR MaLR 1 457 0 313 211 22 33 chr12 90683122 90683212 -53103243 - L1MCa LINE L1 -4022 2404 2316 1013 85 23 17 chr12 90683228 90683404 -53103051 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 625 187 11 22 chr12 90683405 90683587 -53102868 + CT-rich Low_complexity Low_complexity 1 180 0 215 254 17 0 chr12 90683587 90683626 -53102829 + T-rich Low_complexity Low_complexity 2 44 -17 873 216 6 11 chr12 90683626 90683802 -53102653 - FAM SINE Alu 0 175 1 215 254 17 0 chr12 90683802 90683821 -53102634 + T-rich Low_complexity Low_complexity 44 61 0 22 56 0 0 chr12 90684503 90684539 -53101916 + AT_rich Low_complexity Low_complexity 1 36 0 337 382 132 21 chr12 90685689 90685969 -53100486 + L2 LINE L2 2934 3244 -28 13188 149 30 14 chr12 90686200 90688576 -53097879 - Tigger1 DNA MER2_type -3 2415 1 657 301 53 31 chr12 90688598 90688824 -53097631 + MIR SINE MIR 32 262 0 34 24 0 0 chr12 90689039 90689080 -53097375 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr12 90689599 90689635 -53096820 + AT_rich Low_complexity Low_complexity 1 36 0 376 297 89 64 chr12 90690024 90690226 -53096229 - MIR SINE MIR -3 259 53 646 252 92 50 chr12 90690542 90691921 -53094534 + L1MC4a LINE L1 6458 7816 -4 22 0 0 0 chr12 90691922 90691944 -53094511 + AT_rich Low_complexity Low_complexity 1 22 0 2222 87 0 14 chr12 90691952 90692098 -53094357 + AluSq SINE Alu 1 148 -178 1178 95 6 0 chr12 90692098 90692267 -53094188 - L1PA5 LINE L1 -1 6153 5984 2222 87 0 14 chr12 90692267 90692450 -53094005 + AluSq SINE Alu 148 326 0 237 334 109 23 chr12 90692462 90692764 -53093691 - L2 LINE L2 -351 2963 2636 192 265 44 29 chr12 90694281 90694349 -53092106 - L2 LINE L2 -1 3312 3244 468 284 16 8 chr12 90694370 90694497 -53091958 - ERVL LTR ERVL -439 5325 5198 432 0 0 0 chr12 90694567 90694615 -53091840 + (T)n Simple_repeat Simple_repeat 1 48 0 401 82 0 0 chr12 90695947 90695996 -53090459 + (T)n Simple_repeat Simple_repeat 1 49 0 575 297 0 7 chr12 90696233 90696388 -53090067 - MER63A DNA MER1_type -3 207 54 288 0 0 0 chr12 90696473 90696505 -53089950 + (TG)n Simple_repeat Simple_repeat 2 33 0 228 170 38 0 chr12 90696825 90696878 -53089577 + LTR50 LTR ERVL 20 74 -721 751 286 73 48 chr12 90696934 90697281 -53089174 + LTR50 LTR ERVL 388 668 -127 1944 99 65 0 chr12 90697281 90697544 -53088911 - AluSg SINE Alu -30 280 1 751 286 73 48 chr12 90697544 90697651 -53088804 + LTR50 LTR ERVL 668 771 -24 22 0 0 0 chr12 90697870 90697892 -53088563 + AT_rich Low_complexity Low_complexity 1 22 0 294 253 54 54 chr12 90698616 90698782 -53087673 - L1MC5 LINE L1 -54 7907 7742 290 338 52 45 chr12 90700286 90700440 -53086015 - MER5A DNA MER1_type 0 189 35 25 31 0 0 chr12 90701595 90701627 -53084828 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr12 90702744 90702772 -53083683 + (T)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 90702984 90703007 -53083448 + AT_rich Low_complexity Low_complexity 1 23 0 1929 149 27 29 chr12 90703261 90703637 -53082818 - THE1C LTR MaLR 0 375 1 8002 130 59 97 chr12 90703637 90705279 -53081176 - THE1C-int LTR MaLR 0 1580 1 1949 137 26 54 chr12 90705279 90705665 -53080790 - THE1C LTR MaLR 0 375 1 609 247 160 0 chr12 90706016 90706166 -53080289 - MER5A DNA MER1_type -7 182 9 219 296 62 51 chr12 90706182 90706358 -53080097 - MER5B DNA MER1_type 0 178 1 851 260 95 51 chr12 90706586 90707042 -53079413 + L2 LINE L2 2760 3230 -83 30 0 0 0 chr12 90707208 90707238 -53079217 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr12 90707271 90707315 -53079140 + AT_rich Low_complexity Low_complexity 1 44 0 2808 163 11 0 chr12 90708766 90709244 -53077211 + L1MB1 LINE L1 5681 6163 -5 849 263 46 46 chr12 90709280 90709737 -53076718 + MER20B DNA MER1_type 263 719 -64 562 217 29 143 chr12 90710653 90710925 -53075530 + MLT1D LTR MaLR 1 241 -264 863 223 5 68 chr12 90710966 90711186 -53075269 + MIR SINE MIR 36 241 -21 606 305 141 15 chr12 90711265 90711606 -53074849 + L2 LINE L2 2930 3313 0 265 283 235 12 chr12 90712749 90712915 -53073540 + L2 LINE L2 3111 3313 0 2140 132 10 23 chr12 90713856 90714249 -53072206 - L1MA5A LINE L1 -6 6291 5904 740 122 0 16 chr12 90714249 90714372 -53072083 + L1MA5A LINE L1 5787 5907 -390 24 0 0 0 chr12 90714493 90714517 -53071938 + AT_rich Low_complexity Low_complexity 1 24 0 2266 91 0 0 chr12 90714901 90715222 -53071233 + AluSc SINE Alu 1 321 0 369 256 232 12 chr12 90715516 90715684 -53070771 - MIR SINE MIR -38 224 20 210 71 0 0 chr12 90715871 90715899 -53070556 + (CA)n Simple_repeat Simple_repeat 1 28 0 1749 262 25 27 chr12 90715899 90716453 -53070002 - HsTC2a DNA Tc2 -190 554 2 595 226 30 37 chr12 90718416 90718580 -53067875 + L1ME LINE L1 41 203 -5867 447 195 11 11 chr12 90718584 90718671 -53067784 - LTR69 LTR ERVL 0 588 502 683 206 88 0 chr12 90718671 90718831 -53067624 + FRAM SINE Alu 1 168 -8 2107 176 122 35 chr12 90718831 90719292 -53067163 - LTR69 LTR ERVL -87 501 1 802 301 65 46 chr12 90719292 90719707 -53066748 + L1ME LINE L1 204 626 -5444 484 235 118 68 chr12 90719749 90720149 -53066306 + L1M4 LINE L1 4887 5306 -840 301 310 75 31 chr12 90720168 90720394 -53066061 - HAL1 LINE L1 -1450 1057 822 1353 101 42 0 chr12 90720532 90720721 -53065734 + AluSp SINE Alu 107 303 -10 339 267 0 0 chr12 90721133 90721223 -53065232 + L1MC4 LINE L1 6614 6703 -1339 180 0 0 0 chr12 90721223 90721243 -53065212 + (TA)n Simple_repeat Simple_repeat 2 21 0 2060 124 0 0 chr12 90721264 90721539 -53064916 - AluSg SINE Alu -35 275 1 270 0 0 0 chr12 90721810 90721840 -53064615 + (TA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr12 90723245 90723265 -53063190 + (CA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr12 90723264 90723284 -53063171 + (TA)n Simple_repeat Simple_repeat 2 21 0 2108 116 0 0 chr12 90723305 90723580 -53062875 - AluSg SINE Alu -35 275 1 410 335 72 27 chr12 90724045 90724308 -53062147 + MLT1K LTR MaLR 309 583 -5 1862 142 7 10 chr12 90726483 90726778 -53059677 + AluSx SINE Alu 1 294 -18 302 80 0 0 chr12 90726826 90726876 -53059579 - L1MA3 LINE L1 0 6305 6256 506 333 86 53 chr12 90726898 90727354 -53059101 + MLT1K LTR MaLR 88 558 -30 2292 111 7 0 chr12 90729115 90729421 -53057034 + AluSg SINE Alu 3 310 0 198 0 0 0 chr12 90729570 90729592 -53056863 + (A)n Simple_repeat Simple_repeat 1 22 0 1960 231 55 20 chr12 90729630 90730119 -53056336 - MER67D LTR ERV1 -8 506 1 299 319 52 31 chr12 90730133 90730324 -53056131 - MLT1J1 LTR MaLR -174 272 78 200 125 0 0 chr12 90730614 90730646 -53055809 + MIR SINE MIR 86 117 -145 21 0 0 0 chr12 90730845 90730866 -53055589 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 90731109 90731140 -53055315 + AT_rich Low_complexity Low_complexity 1 31 0 547 333 126 34 chr12 90731359 90731907 -53054548 + L2 LINE L2 2705 3300 -13 687 255 41 66 chr12 90732105 90732348 -53054107 + MIR SINE MIR 5 241 -21 639 315 91 17 chr12 90732460 90732701 -53053754 - MIR SINE MIR 0 262 4 183 42 0 0 chr12 90733363 90733387 -53053068 + (TG)n Simple_repeat Simple_repeat 1 24 0 2313 134 11 16 chr12 90733448 90733814 -53052641 - THE1B LTR MaLR 0 364 1 509 248 16 0 chr12 90733970 90734091 -53052364 - MLT1G LTR MaLR 0 590 468 243 228 85 100 chr12 90734177 90734414 -53052041 - MLT1G3 LTR MaLR -267 275 34 2382 84 3 3 chr12 90734479 90734790 -53051665 + AluY SINE Alu 1 311 0 703 243 22 6 chr12 90735296 90735477 -53050978 - MLT1C LTR MaLR -2 588 405 1024 300 141 3 chr12 90736088 90736458 -53049997 + MLT1H LTR MaLR 1 421 -128 25 0 0 0 chr12 90736842 90736867 -53049588 + AT_rich Low_complexity Low_complexity 1 25 0 2380 98 0 6 chr12 90736867 90737195 -53049260 - LTR17 LTR ERV1 -454 326 1 2381 58 0 3 chr12 90737195 90737488 -53048967 - HERV17 LTR ERV1 0 8626 8335 302 51 0 0 chr12 90737478 90737517 -53048938 - HERV17 LTR ERV1 -1078 7548 7510 * 14041 63 2 2 chr12 90737513 90739255 -53047200 - HERV17 LTR ERV1 -1479 7147 5405 * 14056 61 3 1 chr12 90739234 90741034 -53045421 - HERV17 LTR ERV1 -4872 3754 1952 3411 107 44 4 chr12 90741065 90741570 -53044885 - LTR17 LTR ERV1 0 780 256 21 95 0 0 chr12 90742308 90742371 -53044084 + AT_rich Low_complexity Low_complexity 1 63 0 22 56 0 0 chr12 90742391 90742427 -53044028 + AT_rich Low_complexity Low_complexity 1 36 0 307 292 106 25 chr12 90742589 90742863 -53043592 + L1ME4a LINE L1 5632 5927 -194 21 0 0 0 chr12 90743114 90743135 -53043320 + AT_rich Low_complexity Low_complexity 1 21 0 329 271 33 57 chr12 90743275 90743397 -53043058 - L2 LINE L2 -1 3312 3194 242 279 33 98 chr12 90743569 90743691 -53042764 + MIR SINE MIR 32 145 -117 1534 229 23 67 chr12 90745196 90745677 -53040778 + MER65C LTR ERV1 1 460 -1 595 183 0 0 chr12 90746340 90746460 -53039995 + L1MA4 LINE L1 6175 6294 -6 1056 238 48 4 chr12 90747920 90748255 -53038200 + MER93a LTR ERV1 1 402 0 1673 251 47 7 chr12 90748902 90749328 -53037127 - MLT1C LTR MaLR -24 443 1 1780 240 65 25 chr12 90749790 90750311 -53036144 + MLT1F LTR MaLR 1 542 0 21 0 0 0 chr12 90751336 90751357 -53035098 + AT_rich Low_complexity Low_complexity 1 21 0 1969 105 19 35 chr12 90751903 90752217 -53034238 + AluSq SINE Alu 5 313 0 194 242 111 40 chr12 90752274 90752373 -53034082 - L3 LINE CR1 -913 664 559 283 287 11 11 chr12 90752746 90752833 -53033622 - L2 LINE L2 -4 3309 3223 362 291 0 12 chr12 90753107 90753193 -53033262 - L2 LINE L2 -42 3271 3187 604 308 272 17 chr12 90753199 90753799 -53032656 + L2 LINE L2 1937 2689 -625 477 320 29 29 chr12 90754380 90754586 -53031869 - MLT1I LTR MaLR -190 219 14 259 301 19 29 chr12 90754604 90754707 -53031748 - L2 LINE L2 -517 2797 2696 393 327 71 19 chr12 90755663 90755874 -53030581 - MIR SINE MIR -8 254 33 1153 75 0 0 chr12 90757506 90757652 -53028803 - AluY SINE Alu -11 300 155 1171 266 108 37 chr12 90757653 90758390 -53028065 - L1MC5 LINE L1 -65 7896 7107 192 259 56 19 chr12 90759270 90759324 -53027131 - L2 LINE L2 -4 3268 3213 23 54 0 0 chr12 90759400 90759437 -53027018 + AT_rich Low_complexity Low_complexity 1 37 0 201 357 24 0 chr12 90760442 90760526 -53025929 - MIR SINE MIR -174 88 3 279 0 0 0 chr12 90761283 90761314 -53025141 + (TG)n Simple_repeat Simple_repeat 2 32 0 291 306 52 22 chr12 90761321 90761455 -53025000 - L2 LINE L2 -5 3308 3171 3543 106 29 11 chr12 90761887 90762445 -53024010 - L1MA1 LINE L1 -7 6295 5728 229 355 70 15 chr12 90763507 90763707 -53022748 - MIR SINE MIR -11 251 41 560 331 69 22 chr12 90764033 90764308 -53022147 + L2 LINE L2 2531 2818 -496 709 344 91 27 chr12 90764447 90764889 -53021566 + L2 LINE L2 2843 3312 -1 1874 141 0 33 chr12 90765001 90765305 -53021150 + AluSq SINE Alu 1 294 -19 281 256 12 23 chr12 90765397 90765528 -53020927 + (TAG)n Simple_repeat Simple_repeat 1 129 0 338 219 0 0 chr12 90765642 90765706 -53020749 - MIR SINE MIR -74 188 125 1568 193 72 45 chr12 90766025 90766399 -53020056 + MLT1B LTR MaLR 7 390 0 2326 110 27 3 chr12 90766511 90766876 -53019579 - L1PA13 LINE L1 -505 5658 5285 3268 94 22 18 chr12 90766887 90767386 -53019069 + L1PA13 LINE L1 5662 6162 -1 192 206 48 79 chr12 90767490 90767553 -53018902 + L2 LINE L2 3232 3292 -21 21 57 0 0 chr12 90767581 90767616 -53018839 + AT_rich Low_complexity Low_complexity 1 35 0 222 91 0 0 chr12 90768012 90768045 -53018410 + (TG)n Simple_repeat Simple_repeat 1 33 0 289 382 73 0 chr12 90768315 90768438 -53018017 - L2 LINE L2 -23 3249 3118 196 253 11 11 chr12 90769182 90769269 -53017186 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 314 226 24 36 chr12 90769279 90769363 -53017092 - L1MC4 LINE L1 -1340 6702 6620 1826 102 164 80 chr12 90769368 90769741 -53016714 - MER4A LTR ERV1 0 664 261 612 134 0 10 chr12 90769741 90769838 -53016617 - MER4A LTR ERV1 -566 98 3 2700 174 4 63 chr12 90770073 90770869 -53015586 + L1PA11 LINE L1 5278 6014 -160 1769 215 5 3 chr12 90770637 90771005 -53015450 + L1PB4 LINE L1 5783 6151 -5 * 1329 201 3 63 chr12 90771635 90771934 -53014521 + AluJo SINE Alu 4 284 -28 1205 241 169 10 chr12 90772009 90772451 -53014004 - MLT1G1 LTR MaLR -3 592 8 451 179 137 0 chr12 90772548 90772643 -53013812 - MLT1E3 LTR MaLR 0 624 517 234 0 0 0 chr12 90772649 90772675 -53013780 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 200 30 0 chr12 90772675 90772775 -53013680 + (TA)n Simple_repeat Simple_repeat 1 103 0 31 58 0 0 chr12 90772793 90772845 -53013610 + AT_rich Low_complexity Low_complexity 1 52 0 37 52 0 0 chr12 90772904 90772962 -53013493 + AT_rich Low_complexity Low_complexity 1 58 0 702 203 65 0 chr12 90772964 90773117 -53013338 - MER3 DNA MER1_type -46 163 1 304 287 45 32 chr12 90773122 90773279 -53013176 - L1M4 LINE L1 -2927 3219 3061 257 197 14 0 chr12 90773280 90773351 -53013104 + CT-rich Low_complexity Low_complexity 3 74 0 2478 14 4 0 chr12 90773418 90773698 -53012757 - AluYa5 SINE Alu -10 301 21 1086 138 6 0 chr12 90773727 90773887 -53012568 + AluSx SINE Alu 5 165 -147 511 169 153 51 chr12 90774178 90774296 -53012159 - FLAM_A SINE Alu -2 131 2 206 171 53 26 chr12 90774586 90774662 -53011793 + (TTAAA)n Simple_repeat Simple_repeat 3 80 0 707 279 114 58 chr12 90774905 90775335 -53011120 - LTR16A1 LTR ERVL -3 454 1 22 0 0 0 chr12 90776127 90776149 -53010306 + AT_rich Low_complexity Low_complexity 1 22 0 415 268 0 24 chr12 90776543 90776670 -53009785 + MER103 DNA DNA 3 126 -40 1925 211 42 105 chr12 90776862 90777680 -53008775 - LTR41 LTR ERVL -7 766 1 506 139 0 0 chr12 90777983 90778062 -53008393 + MADE1 DNA Mariner 1 79 -1 1478 270 14 45 chr12 90778599 90779088 -53007367 + MLT1D LTR MaLR 28 501 -4 206 326 65 29 chr12 90779690 90779828 -53006627 + MIR SINE MIR 5 147 -115 366 267 20 114 chr12 90780502 90780612 -53005843 - MIR SINE MIR -5 257 172 1562 176 37 0 chr12 90780612 90780908 -53005547 - AluSx SINE Alu 0 306 1 366 267 20 114 chr12 90780908 90780998 -53005457 - MIR SINE MIR -90 172 75 1303 108 0 10 chr12 90781575 90781770 -53004685 - L1PA6 LINE L1 -7 6147 5955 21 0 0 0 chr12 90782267 90782288 -53004167 + AT_rich Low_complexity Low_complexity 1 21 0 917 255 28 49 chr12 90783176 90783603 -53002852 + LTR37B LTR ERV1 1 418 -50 2111 127 3 0 chr12 90784615 90784915 -53001540 - AluSg SINE Alu -9 301 1 189 0 0 0 chr12 90785468 90785489 -53000966 + (TTC)n Simple_repeat Simple_repeat 2 22 0 187 295 74 25 chr12 90786201 90786323 -53000132 + MIR SINE MIR 80 207 -55 284 247 0 74 chr12 90787144 90787225 -52999230 - L2 LINE L2 -2 3311 3237 18674 105 8 6 chr12 90988276 90990973 -52795482 - L1P LINE L1 -3433 2713 11 496 271 52 79 chr12 90990984 90991722 -52794733 - L1MDa LINE L1 -3971 2569 1852 504 321 21 13 chr12 90991749 90991986 -52794469 - L1MDa LINE L1 -4881 1661 1423 240 255 0 0 chr12 90991989 90992040 -52794415 + LTR30 LTR ERV1 1 51 -671 1358 127 27 94 chr12 90992041 90992365 -52794090 + LTR12 LTR ERV1 55 2021 -417 241 296 0 0 chr12 90992365 90992446 -52794009 + LTR30 LTR ERV1 544 624 -98 800 143 25 0 chr12 90992446 90992565 -52793890 + LTR12 LTR ERV1 359 480 -234 685 264 82 27 chr12 90992645 90993050 -52793405 - L1MDa LINE L1 -5089 1454 1028 218 136 23 0 chr12 90993507 90993551 -52792904 + GA-rich Low_complexity Low_complexity 2 46 0 321 344 76 25 chr12 90993912 90994069 -52792386 - L1MDa LINE L1 -6342 198 34 608 269 84 48 chr12 90994092 90994258 -52792197 - L2 LINE L2 -605 2709 2531 1771 56 8 24 chr12 90994258 90994543 -52791912 - L1PA4 LINE L1 0 6155 5911 608 269 84 48 chr12 90994543 90994603 -52791852 - L2 LINE L2 -783 2531 2475 520 256 57 11 chr12 90994704 90994880 -52791575 + L1MC4a LINE L1 5772 5955 -1853 269 300 134 18 chr12 90995505 90995782 -52790673 - L1ME LINE L1 -250 5871 5563 302 330 11 0 chr12 90996885 90996973 -52789482 - L2 LINE L2 0 3313 3225 23 108 0 0 chr12 90997345 90997438 -52789017 + AT_rich Low_complexity Low_complexity 1 93 0 666 170 6 94 chr12 90998301 90998460 -52787995 + Ricksha_b DNA DNA 1 145 -1109 550 170 0 0 chr12 90998455 90998549 -52787906 + ERVL LTR ERVL 5643 5736 -28 * 2017 135 82 15 chr12 90998549 90998890 -52787565 - THE1B LTR MaLR 0 364 1 10570 115 10 17 chr12 90998890 90999208 -52787247 - THE1B-int LTR MaLR 0 1580 1261 2426 78 3 7 chr12 90999208 90999515 -52786940 - AluSc SINE Alu -3 306 1 10570 115 10 17 chr12 90999515 91000746 -52785709 - THE1B-int LTR MaLR -319 1261 42 2091 107 78 19 chr12 91000746 91001065 -52785390 - THE1B LTR MaLR -26 338 1 3142 195 49 75 chr12 91001065 91001997 -52784458 + Ricksha_b DNA DNA 321 1228 -26 222 268 18 0 chr12 91002093 91002149 -52784306 + MIR SINE MIR 158 214 -48 212 373 0 0 chr12 91002202 91002277 -52784178 - L2 LINE L2 -47 3266 3192 2714 126 28 0 chr12 91002760 91003182 -52783273 + MER84 LTR ERVI 74 507 0 389 253 167 25 chr12 91003187 91003349 -52783106 + MER2 DNA MER2_type 160 344 -1 401 220 94 31 chr12 91003353 91003512 -52782943 + MER67D LTR ERV1 346 514 0 479 328 81 0 chr12 91003988 91004162 -52782293 + MIR SINE MIR 1 188 -74 205 29 29 29 chr12 91004207 91004242 -52782213 + (ATG)n Simple_repeat Simple_repeat 2 36 0 1661 165 48 14 chr12 91004413 91004704 -52781751 + AluJb SINE Alu 1 301 -11 930 244 28 39 chr12 91004723 91004977 -52781478 - MIR SINE MIR -3 259 9 225 139 0 0 chr12 91005444 91005487 -52780968 + (CA)n Simple_repeat Simple_repeat 2 44 0 8577 39 11 2 chr12 91006345 91007412 -52779043 + L1PA4 LINE L1 1584 2660 -3486 15669 48 27 0 chr12 91007412 91010175 -52776280 + L1PA4 LINE L1 3430 6217 0 21 0 0 0 chr12 91010532 91010553 -52775902 + GC_rich Low_complexity Low_complexity 1 21 0 24 39 0 0 chr12 91010557 91010583 -52775872 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr12 91010597 91010625 -52775830 + AT_rich Low_complexity Low_complexity 1 28 0 2158 227 64 27 chr12 91010735 91011575 -52774880 - L1 LINE L1 -2701 3649 2779 2722 263 54 66 chr12 91011608 91013005 -52773450 - L1 LINE L1 -4379 1972 617 1055 288 44 46 chr12 91012979 91013438 -52773017 - L1 LINE L1 -5523 758 301 * 1443 228 22 7 chr12 91013536 91013862 -52772593 - MER47B DNA MER2_type -2 416 39 184 77 51 0 chr12 91013975 91014014 -52772441 + GA-rich Low_complexity Low_complexity 1 41 0 2187 183 34 19 chr12 91015721 91016186 -52770269 - LOR1a LTR ERV1 -25 472 1 268 233 33 0 chr12 91016768 91016828 -52769627 - L1MC/D LINE L1 -2147 5661 5600 330 243 69 35 chr12 91017546 91017719 -52768736 + L1ME1 LINE L1 5074 5252 -894 * 537 274 18 6 chr12 91017717 91017885 -52768570 + L1ME1 LINE L1 5992 6161 -5 239 0 0 31 chr12 91018030 91018062 -52768393 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 7502 30 4 4 chr12 91018062 91019071 -52767384 - L1PA3 LINE L1 -16 6139 5131 1364 210 229 99 chr12 91019210 91019899 -52766556 - LTR28 LTR ERV1 -241 779 1 24 32 0 0 chr12 91019940 91019971 -52766484 + AT_rich Low_complexity Low_complexity 1 31 0 1524 145 0 125 chr12 91020336 91020680 -52765775 - AluJb SINE Alu -1 301 1 2911 268 59 23 chr12 91021974 91022361 -52764094 - L1PA13 LINE L1 -3433 3364 2992 396 0 0 0 chr12 91022361 91022405 -52764050 + (TG)n Simple_repeat Simple_repeat 1 44 0 2911 268 59 23 chr12 91022405 91023138 -52763317 - L1PA13 LINE L1 -3805 2992 2204 1198 315 60 24 chr12 91023305 91024050 -52762405 - L1PA13 LINE L1 -4615 2179 1408 838 356 28 53 chr12 91024322 91025105 -52761350 - L1PA13 LINE L1 -5288 1499 1 1410 204 130 3 chr12 91025617 91025941 -52760514 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr12 91026476 91026501 -52759954 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr12 91026830 91026865 -52759590 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr12 91026959 91026989 -52759466 + AT_rich Low_complexity Low_complexity 1 30 0 400 213 0 13 chr12 91027023 91027098 -52759357 + AluJ/FLAM SINE Alu 9 82 -230 372 280 109 47 chr12 91027718 91027911 -52758544 + L2 LINE L2 3103 3307 -6 24 32 0 0 chr12 91028135 91028166 -52758289 + AT_rich Low_complexity Low_complexity 1 31 0 208 244 160 25 chr12 91028204 91028323 -52758132 + MIR SINE MIR 74 208 -54 204 226 0 0 chr12 91028424 91028477 -52757978 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 2565 36 0 0 chr12 91029137 91029443 -52757012 + L1PA5 LINE L1 5841 6146 -8 1923 160 73 3 chr12 91029484 91029853 -52756602 - L1PA16 LINE L1 -3 6163 5769 5133 142 22 7 chr12 91029962 91030874 -52755581 - L1PA16 LINE L1 -16 6150 5226 598 201 5 96 chr12 91030918 91031117 -52755338 + L1MA9 LINE L1 6094 6274 -38 277 267 47 12 chr12 91031618 91031704 -52754751 + L2 LINE L2 3225 3313 0 202 182 18 18 chr12 91031751 91031806 -52754649 + A-rich Low_complexity Low_complexity 3 57 0 228 369 40 13 chr12 91032033 91032182 -52754273 + L2 LINE L2 2731 2883 -431 2443 70 0 0 chr12 91032451 91032749 -52753706 - AluY SINE Alu -1 310 13 240 183 12 110 chr12 91032752 91032834 -52753621 - L2 LINE L2 -15 3298 3225 203 189 0 0 chr12 91033881 91033918 -52752537 + (TA)n Simple_repeat Simple_repeat 1 37 0 1020 116 24 18 chr12 91034986 91035150 -52751305 - LTR19B LTR ERV1 -415 165 1 621 280 8 8 chr12 91035225 91035461 -52750994 - L1M4 LINE L1 -2101 4045 3810 1734 155 14 0 chr12 91035499 91035796 -52750659 - L1PA16 LINE L1 -9 6157 5857 3439 188 46 7 chr12 91035798 91036559 -52749896 + L1 LINE L1 4102 4892 -1254 7473 91 5 16 chr12 91036559 91037628 -52748827 + MER11C LTR ERVK 1 1057 -14 590 194 0 72 chr12 91037662 91037842 -52748613 + L1P LINE L1 4882 5048 -1098 22 0 0 0 chr12 91038066 91038088 -52748367 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr12 91038129 91038155 -52748300 + (T)n Simple_repeat Simple_repeat 1 26 0 342 287 129 33 chr12 91038702 91038974 -52747481 + MLT1L LTR MaLR 154 451 -164 645 129 22 11 chr12 91039275 91039453 -52747002 + (TA)n Simple_repeat Simple_repeat 1 180 0 1837 120 72 7 chr12 91039454 91039730 -52746725 - AluSx SINE Alu -18 294 1 211 344 76 69 chr12 91040324 91040455 -52746000 - L2 LINE L2 -29 3243 3112 1645 201 57 34 chr12 91040475 91041017 -52745438 - MLT2A2 LTR ERVL 0 554 1 285 377 9 9 chr12 91041520 91041626 -52744829 + L2 LINE L2 2968 3073 -199 283 366 23 23 chr12 91042992 91043123 -52743332 - MIR SINE MIR -111 151 21 786 262 15 11 chr12 91043133 91043404 -52743051 + L1M4 LINE L1 4891 5162 -984 266 236 66 58 chr12 91043568 91043826 -52742629 + L1M4 LINE L1 3019 3278 -2868 7093 199 20 4 chr12 91044165 91045752 -52740703 + L1PA12 LINE L1 3 1877 -5704 1254 65 0 7 chr12 91045754 91045909 -52740546 - AluY SINE Alu -157 154 1 184 250 23 0 chr12 91045939 91045983 -52740472 + L2 LINE L2 3262 3306 -7 394 357 68 8 chr12 91046797 91047032 -52739423 - MIR SINE MIR -13 249 1 3307 69 2 4 chr12 91047562 91048013 -52738442 - L1PA4 LINE L1 0 6155 5706 1941 134 0 3 chr12 91048841 91049154 -52737301 + AluSx SINE Alu 1 312 0 226 229 0 0 chr12 91050787 91050835 -52735620 + (TG)n Simple_repeat Simple_repeat 2 49 0 27 62 0 0 chr12 91050946 91050994 -52735461 + AT_rich Low_complexity Low_complexity 1 48 0 2461 57 0 0 chr12 91051377 91051677 -52734778 - AluY SINE Alu -11 300 1 413 303 63 50 chr12 91051741 91051979 -52734476 + MIR SINE MIR 22 262 0 22 70 0 0 chr12 91052412 91052455 -52734000 + AT_rich Low_complexity Low_complexity 1 43 0 1472 171 15 37 chr12 91052751 91053079 -52733376 - THE1C LTR MaLR 0 375 55 613 273 15 85 chr12 91053143 91053287 -52733168 + MIR SINE MIR 1 119 -143 1894 136 0 0 chr12 91053287 91053567 -52732888 + AluY SINE Alu 1 280 -31 613 273 15 85 chr12 91053567 91053693 -52732762 + MIR SINE MIR 119 252 -10 215 316 51 0 chr12 91054055 91054134 -52732321 - MIR SINE MIR -76 186 104 26 30 0 0 chr12 91054712 91054745 -52731710 + AT_rich Low_complexity Low_complexity 1 33 0 225 203 17 34 chr12 91054757 91054816 -52731639 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1928 123 0 17 chr12 91056550 91056850 -52729605 - AluSq SINE Alu -18 295 1 231 167 0 0 chr12 91057392 91057434 -52729021 + (TA)n Simple_repeat Simple_repeat 1 42 0 274 246 0 31 chr12 91057438 91057565 -52728890 + L1MC4 LINE L1 6614 6702 -1340 325 280 196 21 chr12 91057855 91058044 -52728411 + HAL1 LINE L1 1542 1763 -744 1755 223 51 77 chr12 91059250 91059819 -52726636 - MLT2B3 LTR ERVL 0 554 1 255 132 0 0 chr12 91059904 91059942 -52726513 + L1ME1 LINE L1 5745 5782 -460 2142 141 0 0 chr12 91059968 91060280 -52726175 + AluSx SINE Alu 1 312 0 1104 35 14 0 chr12 91060481 91060625 -52725830 + L1P2 LINE L1 5397 5542 -612 22 35 0 0 chr12 91060912 91060941 -52725514 + AT_rich Low_complexity Low_complexity 1 29 0 240 338 73 22 chr12 91061037 91061173 -52725282 - MER5B DNA MER1_type 0 178 36 245 339 96 9 chr12 91061663 91061778 -52724677 + MIR SINE MIR 2 126 -136 201 74 0 0 chr12 91061872 91061899 -52724556 + (ATG)n Simple_repeat Simple_repeat 1 27 0 494 270 94 45 chr12 91062770 91063037 -52723418 + L2 LINE L2 2181 2460 -854 820 149 27 0 chr12 91063079 91063227 -52723228 - L1MB2 LINE L1 -17 6154 6003 1016 249 37 49 chr12 91063227 91063576 -52722879 + L1ME1 LINE L1 5813 6157 -9 1275 331 49 16 chr12 91063619 91064426 -52722029 + L1ME3A LINE L1 5295 6161 -3 204 267 0 17 chr12 91064429 91064489 -52721966 + (TA)n Simple_repeat Simple_repeat 1 59 0 24 32 0 0 chr12 91064590 91064621 -52721834 + AT_rich Low_complexity Low_complexity 1 31 0 315 341 137 6 chr12 91066121 91066303 -52720152 + MIR SINE MIR 6 211 -51 43 47 0 0 chr12 91066352 91066416 -52720039 + AT_rich Low_complexity Low_complexity 1 64 0 33 56 0 0 chr12 91067484 91067538 -52718917 + AT_rich Low_complexity Low_complexity 1 54 0 1511 174 4 11 chr12 91067540 91067810 -52718645 + AluJo SINE Alu 1 268 -44 683 258 45 67 chr12 91067939 91068333 -52718122 - MLT1C LTR MaLR 0 467 31 202 192 0 39 chr12 91068345 91068397 -52718058 + (TA)n Simple_repeat Simple_repeat 1 50 0 745 153 45 201 chr12 91068399 91068758 -52717697 + MER21A LTR ERV1 9 311 -620 322 188 21 10 chr12 91069449 91069545 -52716910 + (TATATG)n Simple_repeat Simple_repeat 3 99 0 507 319 47 17 chr12 91069777 91070181 -52716274 + L1ME3 LINE L1 3347 3762 -2384 2970 160 18 13 chr12 91070299 91070855 -52715600 + L1MB3 LINE L1 5623 6181 -2 2210 97 7 0 chr12 91071176 91071474 -52714981 + AluSp SINE Alu 1 300 -13 21 71 0 0 chr12 91071493 91071535 -52714920 + AT_rich Low_complexity Low_complexity 1 42 0 779 70 9 0 chr12 91071647 91071762 -52714693 + (TC)n Simple_repeat Simple_repeat 2 117 0 266 247 117 13 chr12 91071978 91072055 -52714400 - L2 LINE L2 0 3313 3229 1021 196 63 35 chr12 91072136 91072421 -52714034 - AluJb SINE Alu -9 303 11 351 305 53 18 chr12 91072872 91073154 -52713301 + L1ME3 LINE L1 4942 5233 -913 679 288 112 49 chr12 91073227 91073552 -52712903 + L1ME3 LINE L1 5298 5601 -561 709 218 7 0 chr12 91073552 91073699 -52712756 - L1MB5 LINE L1 -17 6157 6010 679 288 112 49 chr12 91073699 91074163 -52712292 + L1ME3 LINE L1 5601 6152 -10 2013 87 27 3 chr12 91074360 91074659 -52711796 - L1PA13 LINE L1 -330 5833 5528 7808 218 11 5 chr12 91076664 91078485 -52707970 + L1 LINE L1 2775 4607 -1539 35 0 0 0 chr12 91078672 91078707 -52707748 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr12 91078737 91078772 -52707683 + (TA)n Simple_repeat Simple_repeat 1 35 0 288 0 0 0 chr12 91078771 91078803 -52707652 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 255 61 0 0 chr12 91079137 91079170 -52707285 + (TG)n Simple_repeat Simple_repeat 2 34 0 197 337 54 0 chr12 91080526 91080618 -52705837 + L3b LINE CR1 1353 1449 -134 243 313 102 14 chr12 91080957 91081104 -52705351 + MIR SINE MIR 94 253 -9 181 322 34 0 chr12 91081162 91081221 -52705234 + L2 LINE L2 3235 3295 -18 237 343 0 0 chr12 91081585 91081658 -52704797 + L2 LINE L2 3241 3313 0 23 78 0 0 chr12 91081880 91081931 -52704524 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 91082114 91082143 -52704312 + AT_rich Low_complexity Low_complexity 1 29 0 200 393 0 12 chr12 91082887 91082971 -52703484 + L2 LINE L2 3005 3087 -226 365 227 92 33 chr12 91084287 91084560 -52701895 + L1M4c LINE L1 2025 2313 -4071 27 0 0 0 chr12 91084834 91084861 -52701594 + AT_rich Low_complexity Low_complexity 1 27 0 495 277 98 103 chr12 91085000 91085309 -52701146 - L1ME LINE L1 -352 5769 5460 211 236 11 11 chr12 91085937 91086026 -52700429 + (TA)n Simple_repeat Simple_repeat 1 89 0 245 275 0 22 chr12 91086027 91086118 -52700337 + L1MC4 LINE L1 6615 6703 -1339 230 183 50 0 chr12 91086099 91086159 -52700296 + L1MCa LINE L1 2006 2068 -4358 * 254 247 11 0 chr12 91086159 91086252 -52700203 + (TA)n Simple_repeat Simple_repeat 1 94 0 181 284 9 9 chr12 91086688 91086797 -52699658 + (TA)n Simple_repeat Simple_repeat 2 110 0 21 0 0 0 chr12 91087614 91087635 -52698820 + AT_rich Low_complexity Low_complexity 1 21 0 207 242 0 0 chr12 91087826 91087888 -52698567 + (TA)n Simple_repeat Simple_repeat 2 63 0 219 397 50 0 chr12 91089773 91089914 -52696541 - L2 LINE L2 -8 3305 3158 3945 181 40 3 chr12 91090427 91091172 -52695283 + Tigger1 DNA MER2_type 1 773 -1645 379 273 52 81 chr12 91092222 91092394 -52694061 - MER5B DNA MER1_type -8 170 4 23 33 0 0 chr12 91092394 91092424 -52694031 + AT_rich Low_complexity Low_complexity 1 30 0 890 211 40 22 chr12 91093439 91093667 -52692788 + MER39 LTR ERV1 258 489 -218 2245 99 0 3 chr12 91093667 91093971 -52692484 - AluSc SINE Alu -2 307 5 2354 61 10 0 chr12 91093991 91094284 -52692171 - AluY SINE Alu -13 298 3 2337 185 29 89 chr12 91094321 91094949 -52691506 + MER21B LTR ERV1 273 862 -1 423 283 209 31 chr12 91094977 91095235 -52691220 + MLT1J LTR MaLR 1 304 -207 333 47 0 0 chr12 91095967 91096010 -52690445 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr12 91096916 91096942 -52689513 + AT_rich Low_complexity Low_complexity 1 26 0 206 62 31 0 chr12 91097047 91097079 -52689376 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 254 292 0 0 chr12 91097241 91097306 -52689149 - MARNA DNA Mariner -394 192 128 291 308 50 25 chr12 91097369 91097528 -52688927 - MIR SINE MIR -6 256 94 1006 164 0 0 chr12 91098525 91098677 -52687778 + FRAM SINE Alu 2 153 -23 391 170 71 89 chr12 91098809 91098921 -52687534 + MLT1D LTR MaLR 36 145 -360 1604 211 45 43 chr12 91099299 91099952 -52686503 + L1MC/D LINE L1 4978 5637 -605 1878 225 77 16 chr12 91099971 91100402 -52686053 - MER21B LTR ERV1 -23 840 384 1535 275 108 12 chr12 91101323 91102011 -52684444 + L1M4 LINE L1 4104 4857 -1289 1271 186 11 53 chr12 91102645 91102930 -52683525 + MER65A LTR ERV1 1 273 -172 779 109 14 10 chr12 91102930 91103066 -52683389 + MSTA LTR MaLR 1 144 -282 4446 83 33 10 chr12 91103082 91104184 -52682271 - MER11A LTR ERVK 0 1266 1 1192 150 90 79 chr12 91104184 91104436 -52682019 + MSTA LTR MaLR 174 428 0 7774 203 35 9 chr12 91104442 91106041 -52680414 + MSTA-int LTR MaLR 8 1647 -4 1078 123 114 70 chr12 91106047 91106275 -52680180 + MSTA LTR MaLR 3 240 -188 445 350 59 31 chr12 91106779 91107168 -52679287 - L2 LINE L2 -1854 1460 1061 23 0 0 0 chr12 91108850 91108873 -52677582 + AT_rich Low_complexity Low_complexity 1 23 0 491 267 27 27 chr12 91110018 91110168 -52676287 + MLT1C LTR MaLR 1 150 -240 766 240 17 17 chr12 91110170 91110349 -52676106 + MLT1C LTR MaLR 289 467 0 24 32 0 0 chr12 91110511 91110542 -52675913 + AT_rich Low_complexity Low_complexity 1 31 0 391 318 83 63 chr12 91111061 91111313 -52675142 - MIR SINE MIR 0 262 6 1831 130 44 0 chr12 91111585 91111908 -52674547 + AluSx SINE Alu 1 335 0 234 128 0 0 chr12 91112640 91112679 -52673776 + (CATA)n Simple_repeat Simple_repeat 2 40 0 30 77 0 0 chr12 91112679 91112744 -52673711 + AT_rich Low_complexity Low_complexity 1 65 0 866 300 47 34 chr12 91113309 91113815 -52672640 - L1MDa LINE L1 -4258 2282 1770 2329 70 3 7 chr12 91114465 91114764 -52671691 + AluY SINE Alu 1 298 -13 356 350 21 7 chr12 91114806 91114946 -52671509 + MIR SINE MIR 49 190 -72 1958 136 0 4 chr12 91115077 91115357 -52671098 + AluSx SINE Alu 1 279 -33 216 67 0 0 chr12 91115357 91115387 -52671068 + (CAA)n Simple_repeat Simple_repeat 1 30 0 200 385 11 0 chr12 91115463 91115554 -52670901 - L2 LINE L2 -189 3083 2992 289 365 0 9 chr12 91116276 91116383 -52670072 - MIR3 SINE MIR -25 183 78 501 17 0 0 chr12 91116703 91116761 -52669694 + (CA)n Simple_repeat Simple_repeat 2 59 0 387 97 79 0 chr12 91118179 91118293 -52668162 + (TA)n Simple_repeat Simple_repeat 2 124 0 2163 257 41 9 chr12 91118555 91119096 -52667359 + Tigger2 DNA MER2_type 1 558 -2160 317 206 0 0 chr12 91119192 91119260 -52667195 + T-rich Low_complexity Low_complexity 1 68 0 545 213 40 20 chr12 91119682 91119832 -52666623 + Tigger1 DNA MER2_type 2261 2413 -5 221 283 0 17 chr12 91119852 91119912 -52666543 + (TA)n Simple_repeat Simple_repeat 1 59 0 283 333 0 10 chr12 91120045 91120141 -52666314 + L2 LINE L2 1164 1258 -2056 2188 105 0 10 chr12 91120250 91120564 -52665891 - AluY SINE Alu 0 311 1 190 289 36 36 chr12 91121009 91121092 -52665363 + MIR SINE MIR 82 164 -98 1910 97 4 0 chr12 91121358 91121629 -52664826 - AluSp SINE Alu 0 307 36 824 309 58 29 chr12 91122230 91122609 -52663846 + LTR16C LTR ERVL 102 491 0 541 312 50 32 chr12 91122609 91122891 -52663564 + L2 LINE L2 3027 3313 0 28 0 0 0 chr12 91123730 91123758 -52662697 + AT_rich Low_complexity Low_complexity 1 28 0 1715 161 38 9 chr12 91124020 91124336 -52662119 + MSTA LTR MaLR 104 428 0 283 227 148 8 chr12 91124374 91124502 -52661953 - L1MDa LINE L1 -4812 1728 1583 1387 55 22 0 chr12 91125102 91125284 -52661171 - L1PA5 LINE L1 -7 6147 5962 255 240 30 30 chr12 91125544 91125644 -52660811 + L1MCc LINE L1 1368 1467 -4956 649 178 0 0 chr12 91127125 91127226 -52659229 - AluJb SINE Alu -21 291 191 29 70 0 0 chr12 91127795 91127852 -52658603 + AT_rich Low_complexity Low_complexity 1 57 0 212 163 75 100 chr12 91128404 91128484 -52657971 - MIR SINE MIR -10 252 175 313 283 121 20 chr12 91129458 91129557 -52656898 + L1MDb LINE L1 613 721 -5688 286 252 34 8 chr12 91129829 91129948 -52656507 - Charlie7 DNA MER1_type -69 2543 2422 554 234 94 86 chr12 91129989 91130369 -52656086 + MLT1E1 LTR MaLR 15 396 -197 2991 65 0 8 chr12 91130683 91131081 -52655374 + L1PA5 LINE L1 5755 6149 -5 418 293 72 39 chr12 91131081 91131234 -52655221 + L1MDb LINE L1 2422 2568 -3838 1764 80 13 17 chr12 91131234 91131471 -52654984 + AluY SINE Alu 64 299 -12 418 293 72 39 chr12 91131471 91131679 -52654776 + L1MDb LINE L1 2568 2795 -3611 186 167 0 0 chr12 91182468 91182504 -52603951 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1987 164 24 16 chr12 91182905 91183277 -52603178 - THE1C LTR MaLR 0 375 1 210 71 0 0 chr12 91184931 91184959 -52601496 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 330 221 117 0 chr12 91184959 91185036 -52601419 - FLAM_C SINE Alu -19 114 29 188 310 42 56 chr12 91185064 91185206 -52601249 - L2 LINE L2 -4 3309 3170 1227 223 37 11 chr12 91185331 91185600 -52600855 + AluJo SINE Alu 7 282 -30 29 28 0 0 chr12 91186122 91186158 -52600297 + AT_rich Low_complexity Low_complexity 1 36 0 198 150 0 0 chr12 91187575 91187615 -52598840 + (T)n Simple_repeat Simple_repeat 1 40 0 1503 45 0 25 chr12 91187616 91187817 -52598638 - L1PA4 LINE L1 -1 6154 5959 556 289 117 64 chr12 91187819 91188196 -52598259 - LTR16B LTR ERVL -65 399 3 816 134 19 0 chr12 91188372 91188529 -52597926 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 25 102 0 0 chr12 91188888 91188976 -52597479 + AT_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr12 91189243 91189265 -52597190 + AT_rich Low_complexity Low_complexity 1 22 0 1993 99 48 14 chr12 91189496 91189790 -52596665 + AluSx SINE Alu 1 304 -8 27 62 0 0 chr12 91190729 91190777 -52595678 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr12 91191555 91191576 -52594879 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 91191673 91191702 -52594753 + AT_rich Low_complexity Low_complexity 1 29 0 395 301 96 6 chr12 91191790 91191946 -52594509 + MER69A DNA AcHobo 1 170 -7 349 215 0 0 chr12 91192400 91192465 -52593990 - MLT1F1 LTR MaLR -3 564 500 6040 147 27 9 chr12 91194415 91194503 -52591952 + L1MA4A LINE L1 4936 5021 -1282 1741 91 0 12 chr12 91194503 91194744 -52591711 + AluY SINE Alu 69 306 -5 6040 147 27 9 chr12 91194744 91195996 -52590459 + L1MA4A LINE L1 5021 6296 -7 1099 194 40 0 chr12 91196042 91196243 -52590212 - MER2 DNA MER2_type -135 210 2 3625 161 47 13 chr12 91197050 91197370 -52589085 + L1PB4 LINE L1 5447 5755 -401 180 0 0 0 chr12 91197370 91197390 -52589065 + (CA)n Simple_repeat Simple_repeat 1 20 0 3625 161 47 13 chr12 91197390 91197702 -52588753 + L1PB4 LINE L1 5755 6106 -50 1683 183 133 18 chr12 91197702 91198084 -52588371 + MSTA LTR MaLR 1 426 -2 3625 161 47 13 chr12 91198084 91198134 -52588321 + L1PB4 LINE L1 6106 6153 -3 24 0 0 0 chr12 91198134 91198158 -52588297 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 91198215 91198237 -52588218 + AT_rich Low_complexity Low_complexity 1 22 0 614 293 5 19 chr12 91198242 91198454 -52588001 + L1MEc LINE L1 190 398 -6165 1735 168 7 3 chr12 91198521 91198806 -52587649 - AluJo SINE Alu -26 286 1 1980 206 12 28 chr12 91198815 91199214 -52587241 + MER47B DNA MER2_type 26 418 0 1930 292 33 10 chr12 91199286 91200083 -52586372 + L1MEc LINE L1 478 1292 -5271 266 247 99 43 chr12 91200092 91200254 -52586201 + L1MEc LINE L1 1199 1369 -5015 302 235 6 136 chr12 91200491 91200653 -52585802 + L1MEc LINE L1 1660 1800 -4763 3179 251 32 71 chr12 91200676 91201909 -52584546 + L1M4 LINE L1 16 1200 -5342 22 0 0 0 chr12 91201909 91201931 -52584524 + AT_rich Low_complexity Low_complexity 1 22 0 1043 140 156 208 chr12 91201931 91202374 -52584081 + THE1C LTR MaLR 9 375 0 1086 254 22 0 chr12 91202378 91202697 -52583758 + L1M4 LINE L1 1222 1547 -4995 852 238 89 17 chr12 91202714 91203117 -52583338 + L1M4 LINE L1 2449 2880 -3945 38076 87 4 8 chr12 91203780 91209942 -52576513 + L1PA6 LINE L1 11 6148 -6 434 332 62 47 chr12 91211276 91211412 -52575043 + MIR SINE MIR 38 180 -82 1176 265 115 47 chr12 91211412 91211967 -52574488 - MLT1E LTR MaLR 0 593 1 434 332 62 47 chr12 91211967 91212041 -52574414 + MIR SINE MIR 180 251 -11 1880 141 8 83 chr12 91212579 91212686 -52573769 + MER7A DNA MER2_type 2 115 -2923 255 61 0 0 chr12 91212686 91212719 -52573736 + (TG)n Simple_repeat Simple_repeat 2 34 0 1318 188 17 45 chr12 91212719 91213006 -52573449 - AluJo SINE Alu -29 283 5 1880 141 8 83 chr12 91213006 91213272 -52573183 + MER7A DNA MER2_type 113 346 0 675 228 30 24 chr12 91213419 91213586 -52572869 + MLT1A2 LTR MaLR 12 179 -195 22 0 0 0 chr12 91213887 91213909 -52572546 + AT_rich Low_complexity Low_complexity 1 22 0 743 247 22 17 chr12 91215395 91215573 -52570882 + MLT1A2 LTR MaLR 1 179 -195 223 339 109 11 chr12 91215574 91215748 -52570707 - MIR SINE MIR -44 218 28 22 0 0 0 chr12 91215764 91215786 -52570669 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 91216570 91216613 -52569842 + AT_rich Low_complexity Low_complexity 1 43 0 5248 32 0 0 chr12 91217455 91218105 -52568350 - L1P LINE L1 -2819 3327 2678 3912 32 0 0 chr12 91218105 91218558 -52567897 + L1PA3 LINE L1 5691 6152 -3 198 0 0 0 chr12 91218561 91218583 -52567872 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 29 70 0 0 chr12 91219783 91219840 -52566615 + AT_rich Low_complexity Low_complexity 1 57 0 849 234 39 0 chr12 91219848 91220053 -52566402 + L1MB7 LINE L1 5437 5649 -535 1302 193 40 19 chr12 91220056 91220373 -52566082 - MSTD LTR MaLR -2 394 1 2028 221 42 4 chr12 91220373 91220875 -52565580 + L1MB7 LINE L1 5646 6166 -18 364 160 21 11 chr12 91220883 91220977 -52565478 + L1MB7 LINE L1 6073 6167 -17 685 289 75 32 chr12 91221214 91221688 -52564767 + L1ME3A LINE L1 5237 5728 -442 27 29 0 0 chr12 91221769 91221803 -52564652 + AT_rich Low_complexity Low_complexity 1 34 0 399 248 142 50 chr12 91221826 91222044 -52564411 + L1ME3A LINE L1 5929 6166 -4 28 29 0 0 chr12 91222118 91222153 -52564302 + AT_rich Low_complexity Low_complexity 1 35 0 198 283 0 0 chr12 91223354 91223400 -52563055 - L2 LINE L2 -4 3309 3264 350 329 110 45 chr12 91223721 91223839 -52562616 + MLT1H LTR MaLR 13 122 -427 517 153 10 0 chr12 91223839 91223937 -52562518 - L1MA7 LINE L1 0 6291 6193 350 329 110 45 chr12 91223937 91224308 -52562147 + MLT1H LTR MaLR 122 534 -15 285 395 97 13 chr12 91224865 91225093 -52561362 + L2 LINE L2 3025 3271 -1 1312 199 5 124 chr12 91225396 91225784 -52560671 + MLT1A2 LTR MaLR 33 374 0 198 383 57 81 chr12 91226196 91226444 -52560011 + L2 LINE L2 3022 3263 -9 25 51 0 0 chr12 91226468 91226507 -52559948 + AT_rich Low_complexity Low_complexity 1 39 0 298 307 113 50 chr12 91230229 91230653 -52555802 - MLT1J LTR MaLR -58 453 3 188 400 64 8 chr12 91231646 91231771 -52554684 + MIR3 SINE MIR 10 141 -67 1271 109 5 0 chr12 91232069 91232262 -52554193 - L1PA6 LINE L1 -4 6150 5957 380 98 0 0 chr12 91232262 91232313 -52554142 + L1P3 LINE L1 5567 5617 -555 200 227 0 0 chr12 91233049 91233093 -52553362 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 388 223 142 57 chr12 91234501 91234748 -52551707 + L1M4 LINE L1 3112 3379 -2767 196 367 8 67 chr12 91235645 91235765 -52550690 + L2 LINE L2 2960 3072 -241 967 311 66 8 chr12 91235765 91236128 -52550327 + MLT1I LTR MaLR 13 396 -13 669 256 104 102 chr12 91236503 91236963 -52549492 - LTR41 LTR ERVL -6 767 307 612 300 21 11 chr12 91236979 91237169 -52549286 - LTR41 LTR ERVL -581 192 1 193 329 66 0 chr12 91237248 91237324 -52549131 - L2 LINE L2 -786 2528 2448 399 299 14 41 chr12 91237425 91237572 -52548883 - L2 LINE L2 -936 2378 2236 237 239 16 55 chr12 91238201 91238389 -52548066 + A-rich Low_complexity Low_complexity 1 180 0 1811 138 36 0 chr12 91238695 91238971 -52547484 + AluSx SINE Alu 3 288 -24 292 351 169 13 chr12 91239578 91239732 -52546723 + MIR SINE MIR 51 228 -34 1376 205 46 17 chr12 91240109 91240462 -52545993 + AluJb SINE Alu 1 362 0 199 109 0 43 chr12 91241295 91241341 -52545114 + (TTTCC)n Simple_repeat Simple_repeat 4 47 0 2155 85 20 3 chr12 91242405 91242699 -52543756 - AluY SINE Alu -12 299 1 22 70 0 0 chr12 91242715 91242758 -52543697 + AT_rich Low_complexity Low_complexity 1 43 0 307 157 0 0 chr12 91244579 91244630 -52541825 - MADE1 DNA Mariner -29 51 1 839 258 57 12 chr12 91244631 91244879 -52541576 - MER58 DNA MER1_type -2158 262 4 10315 175 18 13 chr12 91245168 91247412 -52539043 + L1PA15-16 LINE L1 2 2235 -4614 234 62 0 0 chr12 91247412 91247444 -52539011 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 10315 175 18 13 chr12 91247444 91247830 -52538625 + L1PA15-16 LINE L1 2235 2424 -4425 2887 111 22 87 chr12 91247830 91248380 -52538075 + MER75 DNA T2_type 1 514 0 10315 175 18 13 chr12 91248380 91248533 -52537922 + L1PA15-16 LINE L1 2424 2575 -4274 3978 236 38 7 chr12 91248549 91249689 -52536766 + L1 LINE L1 2906 4080 -2769 1236 179 60 4 chr12 91249689 91249941 -52536514 + L1PA16 LINE L1 5896 6161 -5 465 281 156 16 chr12 91250210 91250402 -52536053 + MIR SINE MIR 44 262 0 246 193 0 0 chr12 91250463 91250520 -52535935 + (CA)n Simple_repeat Simple_repeat 2 58 0 1870 129 4 4 chr12 91251458 91251738 -52534717 + AluSq SINE Alu 17 296 -17 256 217 267 33 chr12 91252590 91252710 -52533745 - MER5B DNA MER1_type 0 178 31 1048 209 22 7 chr12 91252713 91252986 -52533469 - L1MA4 LINE L1 0 6300 6024 24 53 0 0 chr12 91254664 91254702 -52531753 + AT_rich Low_complexity Low_complexity 1 38 0 870 276 64 93 chr12 91254923 91255438 -52531017 + L2 LINE L2 2094 2593 -721 7552 25 5 0 chr12 91255460 91256346 -52530109 - L1PA3 LINE L1 -3 6152 5263 415 303 0 35 chr12 91256347 91256489 -52529966 + L2 LINE L2 2671 2807 -507 1654 204 22 19 chr12 91256546 91256909 -52529546 + MLT1A1 LTR MaLR 1 364 -1 226 324 166 7 chr12 91257080 91257219 -52529236 + L2 LINE L2 3152 3312 -1 302 257 20 56 chr12 91257358 91257510 -52528945 - MIR SINE MIR -62 146 36 23 0 0 0 chr12 91257823 91257846 -52528609 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr12 91258312 91258343 -52528112 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr12 91258741 91258772 -52527683 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr12 91259271 91259309 -52527146 + AT_rich Low_complexity Low_complexity 1 38 0 544 257 97 24 chr12 91260072 91260278 -52526177 + MIR SINE MIR 28 248 -14 321 122 40 0 chr12 91260283 91260357 -52526098 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 182 378 18 0 chr12 91260412 91260523 -52525932 + L2 LINE L2 968 1080 -2234 581 299 170 17 chr12 91260633 91261044 -52525411 + L2 LINE L2 1188 1661 -1653 498 82 0 0 chr12 91261122 91261195 -52525260 + AluS SINE Alu 1 73 -240 28451 119 21 26 chr12 91261195 91262892 -52523563 - L1PA8 LINE L1 -152 6335 4632 2151 92 0 54 chr12 91262892 91263207 -52523248 - AluY SINE Alu -13 298 1 28451 119 21 26 chr12 91263207 91267786 -52518669 - L1PA8 LINE L1 -1855 4632 8 405 330 139 32 chr12 91267805 91268178 -52518277 + L2 LINE L2 2110 2522 -792 21 0 0 0 chr12 91268874 91268895 -52517560 + AT_rich Low_complexity Low_complexity 1 21 0 496 342 33 55 chr12 91268981 91269311 -52517144 + L1MEd LINE L1 918 1240 -4879 514 276 157 13 chr12 91269401 91269874 -52516581 + L1M4 LINE L1 4408 4950 -1196 743 341 80 9 chr12 91269887 91270236 -52516219 - LTR16A LTR ERVL -58 392 19 24 32 0 0 chr12 91270794 91270825 -52515630 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 91271382 91271426 -52515029 + AT_rich Low_complexity Low_complexity 1 44 0 6721 136 18 15 chr12 91271736 91272958 -52513497 + L1MA2 LINE L1 4940 6165 -139 2031 101 14 34 chr12 91272958 91273254 -52513201 + AluSc SINE Alu 1 290 -19 6721 136 18 15 chr12 91273254 91273395 -52513060 + L1MA2 LINE L1 6165 6304 0 25 0 0 0 chr12 91274666 91274691 -52511764 + AT_rich Low_complexity Low_complexity 1 25 0 263 333 0 0 chr12 91274728 91274809 -52511646 + (ATG)n Simple_repeat Simple_repeat 1 81 0 313 301 102 44 chr12 91274921 91275147 -52511308 - L1MC4a LINE L1 -1927 5881 5643 354 129 0 0 chr12 91275370 91275432 -52511023 + (TG)n Simple_repeat Simple_repeat 1 62 0 2273 155 52 9 chr12 91276573 91276998 -52509457 - Tigger2 DNA MER2_type -3 2715 2273 354 215 0 0 chr12 91276989 91277054 -52509401 - Tigger2 DNA MER2_type -2650 68 4 * 1066 88 11 17 chr12 91277057 91277238 -52509217 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3907 156 177 24 chr12 91278216 91279056 -52507399 + Tigger1 DNA MER2_type 1 969 -1449 1136 214 6 77 chr12 91279058 91279371 -52507084 - AluJo SINE Alu -19 293 3 8423 150 29 5 chr12 91279373 91280789 -52505666 + Tigger1 DNA MER2_type 968 2417 -1 26 0 0 0 chr12 91281480 91281506 -52504949 + AT_rich Low_complexity Low_complexity 1 26 0 194 243 215 73 chr12 91281625 91281802 -52504653 - MIR SINE MIR -21 241 40 567 65 32 11 chr12 91282222 91282315 -52504140 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 702 180 7 22 chr12 91283447 91283586 -52502869 - FLAM_C SINE Alu -6 137 1 23 0 0 0 chr12 91283595 91283618 -52502837 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr12 91283749 91283773 -52502682 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2226 110 48 25 chr12 91283823 91284177 -52502278 + THE1B LTR MaLR 1 362 -2 10993 108 4 9 chr12 91284179 91284546 -52501909 + THE1B-int LTR MaLR 1 368 -1212 1883 166 3 10 chr12 91284546 91284859 -52501596 - AluSx SINE Alu -1 311 1 10993 108 4 9 chr12 91284859 91286079 -52500376 + THE1B-int LTR MaLR 368 1580 0 2149 114 82 18 chr12 91286079 91286421 -52500034 + THE1B LTR MaLR 1 364 0 225 0 0 0 chr12 91286607 91286632 -52499823 + (TATG)n Simple_repeat Simple_repeat 4 28 0 519 141 0 0 chr12 91286651 91286729 -52499726 - AluJ/FLAM SINE Alu -221 91 14 224 371 86 9 chr12 91286822 91287043 -52499412 - L3b LINE CR1 -89 1494 1257 478 88 12 25 chr12 91287495 91287575 -52498880 - L1PB2 LINE L1 -654 5497 5419 4488 82 9 6 chr12 91287576 91288219 -52498236 + L1PB2 LINE L1 5505 6149 -2 22 56 0 0 chr12 91288219 91288255 -52498200 + AT_rich Low_complexity Low_complexity 1 36 0 282 308 11 22 chr12 91288402 91288493 -52497962 - LTR16A1 LTR ERVL -367 90 1 247 224 53 13 chr12 91288500 91288576 -52497879 + L1ME3A LINE L1 5655 5733 -388 21 57 0 0 chr12 91288729 91288764 -52497691 + AT_rich Low_complexity Low_complexity 1 35 0 726 250 35 0 chr12 91288812 91288984 -52497471 - MER45A DNA AcHobo 0 178 1 222 37 0 0 chr12 91290121 91290148 -52496307 + (CA)n Simple_repeat Simple_repeat 1 27 0 30 0 0 0 chr12 91290489 91290519 -52495936 + AT_rich Low_complexity Low_complexity 1 30 0 597 308 58 14 chr12 91290653 91290861 -52495594 - MIR SINE MIR 0 262 46 195 346 52 44 chr12 91291247 91291383 -52495072 + L2 LINE L2 3159 3295 -18 2209 129 33 33 chr12 91291407 91291771 -52494684 + THE1B LTR MaLR 1 364 0 480 146 0 0 chr12 91291793 91291882 -52494573 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 564 253 84 36 chr12 91292322 91292547 -52493908 + L1ME3A LINE L1 5934 6169 -1 690 271 43 0 chr12 91294999 91295209 -52491246 + MER20 DNA MER1_type 1 219 0 550 307 65 71 chr12 91295314 91295606 -52490849 - MLT1G LTR MaLR -7 588 256 1900 160 12 29 chr12 91295606 91295949 -52490506 + MER1B DNA MER1_type 1 337 0 550 307 65 71 chr12 91295949 91296187 -52490268 - MLT1G LTR MaLR -339 256 18 407 281 29 114 chr12 91296215 91296557 -52489898 - MLT1G-int LTR MaLR -31 1340 1028 687 287 55 20 chr12 91297234 91297488 -52488967 - MLT1H1 LTR MaLR -292 263 1 21 0 0 0 chr12 91300225 91300246 -52486209 + AT_rich Low_complexity Low_complexity 1 21 0 994 206 62 13 chr12 91300339 91300754 -52485701 - MLT1B LTR MaLR 0 467 7 463 180 0 74 chr12 91301780 91301902 -52484553 - L1MA8 LINE L1 -226 6065 5953 660 177 57 6 chr12 91301903 91302061 -52484394 + L1MA8 LINE L1 6121 6286 -5 1925 122 6 13 chr12 91302480 91302791 -52483664 - AluSx SINE Alu -3 309 1 23 54 0 0 chr12 91304765 91304802 -52481653 + AT_rich Low_complexity Low_complexity 1 37 0 2038 128 0 0 chr12 91305437 91305727 -52480728 + AluSx SINE Alu 1 290 -22 1467 93 22 4 chr12 91306169 91306395 -52480060 + L1MA3 LINE L1 6076 6305 0 21 0 0 0 chr12 91306395 91306416 -52480039 + AT_rich Low_complexity Low_complexity 1 21 0 24 103 0 0 chr12 91306603 91306690 -52479765 + AT_rich Low_complexity Low_complexity 1 87 0 603 336 41 8 chr12 91307867 91308111 -52478344 - MIR SINE MIR -1 261 10 425 343 53 6 chr12 91308287 91308456 -52477999 + LTR16A LTR ERVL 257 433 -17 255 361 68 53 chr12 91308639 91309285 -52477170 - L1MEd LINE L1 -5374 745 90 3575 120 10 2 chr12 91309298 91309814 -52476641 - MER1A DNA MER1_type -9 520 1 261 0 0 0 chr12 91310453 91310482 -52475973 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1308 232 13 48 chr12 91311475 91311850 -52474605 + MLT1A1 LTR MaLR 4 365 0 254 310 138 69 chr12 91312634 91312779 -52473676 + L3 LINE CR1 1409 1563 -14 * 3605 316 146 40 chr12 91312754 91315577 -52470878 + L2 LINE L2 185 3309 -4 270 0 0 0 chr12 91316162 91316192 -52470263 + (A)n Simple_repeat Simple_repeat 1 30 0 261 119 0 0 chr12 91316478 91316489 -52469966 + (CA)n Simple_repeat Simple_repeat 1 11 -432 1933 160 12 12 chr12 91316489 91316832 -52469623 - MER2 DNA MER2_type 0 344 2 261 119 0 0 chr12 91316832 91316879 -52469576 + (CA)n Simple_repeat Simple_repeat 10 443 0 261 119 0 0 chr12 91316879 91316921 -52469534 + (CA)n Simple_repeat Simple_repeat 1 42 0 26 74 0 0 chr12 91317509 91317563 -52468892 + AT_rich Low_complexity Low_complexity 1 54 0 1769 144 31 0 chr12 91317885 91318176 -52468279 - L1PA16 LINE L1 -9 6157 5858 713 133 92 0 chr12 91318176 91318296 -52468159 + L1P4 LINE L1 5647 5777 -389 255 239 84 0 chr12 91319644 91319715 -52466740 + MLT1H LTR MaLR 457 533 -16 959 156 6 0 chr12 91319996 91320175 -52466280 + (TG)n Simple_repeat Simple_repeat 1 180 0 1161 329 18 27 chr12 91320931 91321445 -52465010 - LTR33 LTR ERVL -12 509 1 349 345 64 0 chr12 91323213 91323323 -52463132 + L2 LINE L2 2635 2751 -563 318 311 169 27 chr12 91324056 91324239 -52462216 + MIR SINE MIR 13 221 -41 22 0 0 0 chr12 91324797 91324819 -52461636 + AT_rich Low_complexity Low_complexity 1 22 0 208 139 0 0 chr12 91327514 91327550 -52458905 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 633 318 52 43 chr12 91327566 91327893 -52458562 - LTR16C LTR ERVL -8 483 154 906 234 15 81 chr12 91329371 91329705 -52456750 - L1M4 LINE L1 -1363 4783 4472 2619 250 70 13 chr12 91329748 91330121 -52456334 + L1ME1 LINE L1 4807 5157 -1009 3105 113 48 16 chr12 91330121 91330616 -52455839 + MER9 LTR ERVK 1 511 0 2619 250 70 13 chr12 91330616 91331530 -52454925 + L1ME1 LINE L1 5157 6161 -5 1423 192 22 99 chr12 91332022 91332434 -52454021 + MLT2C1 LTR ERVL 16 395 -2 453 160 28 9 chr12 91332569 91332675 -52453780 + CT-rich Low_complexity Low_complexity 1 108 0 1441 207 17 7 chr12 91332684 91332974 -52453481 - AluJb SINE Alu -17 295 3 42 65 0 0 chr12 91332994 91333071 -52453384 + AT_rich Low_complexity Low_complexity 1 77 0 1024 222 30 91 chr12 91333090 91333486 -52452969 - MLT1A2 LTR MaLR 0 374 3 26 76 0 13 chr12 91334007 91334056 -52452399 + AT_rich Low_complexity Low_complexity 1 50 -28 2588 67 3 3 chr12 91334056 91334402 -52452053 + L1PA7 LINE L1 5805 6150 -4 26 76 0 13 chr12 91334402 91334431 -52452024 + AT_rich Low_complexity Low_complexity 50 78 0 23 0 0 0 chr12 91335404 91335427 -52451028 + AT_rich Low_complexity Low_complexity 1 23 0 470 296 39 69 chr12 91335429 91335662 -52450793 - MIR SINE MIR -6 256 31 22 0 0 0 chr12 91335724 91335746 -52450709 + AT_rich Low_complexity Low_complexity 1 22 0 5075 186 14 7 chr12 91335813 91336958 -52449497 - L1MA6 LINE L1 -37 6263 5113 2152 186 23 2 chr12 91336955 91337397 -52449058 + L1MA6 LINE L1 4642 5092 -1054 * 219 36 0 0 chr12 91337397 91337425 -52449030 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 436 325 66 14 chr12 91337576 91337788 -52448667 + L1MEc LINE L1 92 314 -6082 867 280 46 3 chr12 91337802 91338132 -52448323 + L1ME1 LINE L1 5819 6162 -4 833 247 40 79 chr12 91338421 91338500 -52447955 - MLT1E1 LTR MaLR -29 625 544 1717 198 47 68 chr12 91338500 91339016 -52447439 - MLT1D LTR MaLR 0 505 1 833 247 40 79 chr12 91339016 91339083 -52447372 - MLT1E1 LTR MaLR -110 544 476 1795 176 3 0 chr12 91339083 91339379 -52447076 - AluJb SINE Alu -15 297 1 833 247 40 79 chr12 91339379 91339594 -52446861 - MLT1E1 LTR MaLR -178 476 257 26931 43 1 1 chr12 91340904 91345238 -52441217 + L1P LINE L1 3 4332 -1814 359 278 188 22 chr12 91396172 91396395 -52390060 - L1MA6 LINE L1 -1763 4383 4124 4203 145 1 3 chr12 91396506 91397169 -52389286 - HERVH LTR ERV1 -2564 5149 4488 2409 120 11 5 chr12 91397172 91397554 -52388901 - HERVH LTR ERV1 -3721 3992 3609 202 172 46 0 chr12 91397899 91397986 -52388469 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1127 129 0 5 chr12 91398037 91398227 -52388228 + L1MA7 LINE L1 5725 5905 -249 203 59 0 29 chr12 91398365 91398399 -52388056 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2331 164 10 0 chr12 91398404 91398787 -52387668 + MLT1B LTR MaLR 4 390 0 287 271 59 34 chr12 91398787 91398894 -52387561 - MER58C DNA MER1_type -37 178 69 1517 165 41 6 chr12 91399317 91399632 -52386823 - L1MA8 LINE L1 -29 6262 5937 363 225 0 0 chr12 91399681 91399761 -52386694 - L1PA16 LINE L1 -9 6157 6078 439 109 33 87 chr12 91399762 91399854 -52386601 + L1PB4 LINE L1 5803 5889 -267 1666 52 5 0 chr12 91400083 91400294 -52386161 - L1PA4 LINE L1 -11 6144 5933 28 0 0 0 chr12 91400359 91400387 -52386068 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr12 91400510 91400543 -52385912 + (A)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr12 91400564 91400586 -52385869 + AT_rich Low_complexity Low_complexity 1 22 0 890 205 5 0 chr12 91400976 91401176 -52385279 + L1PA4 LINE L1 5955 6155 0 1375 214 10 10 chr12 91401195 91401504 -52384951 + AluSc SINE Alu 1 309 0 2561 135 43 37 chr12 91402077 91402654 -52383801 - MER4E LTR ERV1 0 779 1 821 260 59 62 chr12 91402658 91402813 -52383642 - MER87 LTR ERV1 -2 539 385 2390 39 0 0 chr12 91402813 91403149 -52383306 - AluY SINE Alu 0 338 3 821 260 59 62 chr12 91403149 91403365 -52383090 - MER87 LTR ERV1 -156 385 168 1423 229 0 16 chr12 91403500 91403810 -52382645 + AluJo SINE Alu 1 305 -7 1342 232 40 3 chr12 91403845 91404147 -52382308 + L1MA8 LINE L1 5476 5788 -524 228 106 0 0 chr12 91404161 91404208 -52382247 + LTR66 LTR ERVL 394 440 -170 1203 201 49 30 chr12 91404228 91404245 -52382210 + L1MA8 LINE L1 5776 5791 -500 285 89 0 0 chr12 91404245 91404290 -52382165 + (CA)n Simple_repeat Simple_repeat 2 46 0 1203 201 49 30 chr12 91404290 91404601 -52381854 + L1MA8 LINE L1 5791 6110 -181 360 0 0 0 chr12 91406318 91406358 -52380097 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr12 91407119 91407147 -52379308 + AT_rich Low_complexity Low_complexity 1 28 0 216 200 0 0 chr12 91407316 91407361 -52379094 + A-rich Low_complexity Low_complexity 1 45 0 227 287 20 20 chr12 91407434 91407535 -52378920 + L1MEc LINE L1 1540 1640 -4756 215 329 38 25 chr12 91408279 91408358 -52378097 - MIR SINE MIR -182 80 1 237 331 132 0 chr12 91408455 91408576 -52377879 - L2 LINE L2 -1944 1370 1234 24 53 0 0 chr12 91409020 91409058 -52377397 + AT_rich Low_complexity Low_complexity 1 38 0 30 59 0 0 chr12 91410846 91410897 -52375558 + AT_rich Low_complexity Low_complexity 1 51 0 491 179 122 39 chr12 91411180 91411336 -52375119 + L1MB7 LINE L1 5724 5892 -292 204 67 0 0 chr12 91411876 91411906 -52374549 + (CA)n Simple_repeat Simple_repeat 1 30 0 273 275 99 35 chr12 91411985 91412127 -52374328 - MIR SINE MIR -12 250 100 2742 13 3 0 chr12 91415689 91415998 -52370457 - AluY SINE Alu -1 310 1 229 353 148 19 chr12 91417039 91417311 -52369144 - L2 LINE L2 -230 3042 2726 236 379 81 14 chr12 91417415 91417626 -52368829 + L2 LINE L2 2584 2808 -506 28 29 0 0 chr12 91417928 91417963 -52368492 + AT_rich Low_complexity Low_complexity 1 35 0 36 53 0 0 chr12 91418096 91418153 -52368302 + AT_rich Low_complexity Low_complexity 1 57 0 1524 247 30 2 chr12 91418484 91418889 -52367566 + L1MB3 LINE L1 4408 4823 -1323 1785 169 13 59 chr12 91418913 91419286 -52367169 - MER47A DNA MER2_type -2 364 9 2767 211 56 11 chr12 91419294 91420322 -52366133 + L1MB3 LINE L1 4841 5906 -277 18621 27 1 0 chr12 91420324 91422567 -52363888 + L1P LINE L1 2628 4873 -1273 8093 32 1 1 chr12 91422667 91424418 -52362037 + L1PA3 LINE L1 4404 6154 -1 1109 189 35 25 chr12 91424418 91424701 -52361754 + L1MB3 LINE L1 5894 6181 -2 2483 65 0 24 chr12 91425112 91425449 -52361006 + L1PA6 LINE L1 5823 6151 -3 431 217 9 0 chr12 91425663 91425769 -52360686 + AluSp/q SINE Alu 205 311 -2 2130 91 0 61 chr12 91425769 91426099 -52360356 + AluSp SINE Alu 1 310 -3 625 181 0 0 chr12 91426100 91426216 -52360239 + L1MB2 LINE L1 6054 6169 -2 21 100 0 0 chr12 91426344 91426414 -52360041 + AT_rich Low_complexity Low_complexity 1 70 0 21 36 0 0 chr12 91426481 91426509 -52359946 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 91426938 91426961 -52359494 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 44 15 chr12 91427103 91427171 -52359284 + (TA)n Simple_repeat Simple_repeat 1 70 0 * 235 133 33 17 chr12 91427127 91427187 -52359268 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 1100 192 4 16 chr12 91427394 91427649 -52358806 + L1MA4 LINE L1 6043 6294 -6 21 0 0 0 chr12 91428849 91428870 -52357585 + AT_rich Low_complexity Low_complexity 1 21 0 487 272 0 7 chr12 91429034 91429181 -52357274 - L1MC3 LINE L1 -1291 6494 6349 427 261 22 45 chr12 91429306 91429528 -52356927 - L1MCa LINE L1 -5866 345 3 259 333 27 36 chr12 91430290 91430401 -52356054 - L2 LINE L2 -15 3257 3148 201 39 0 0 chr12 91430748 91430774 -52355681 + (T)n Simple_repeat Simple_repeat 1 26 0 3362 140 72 2 chr12 91431436 91432015 -52354440 + L1MA5 LINE L1 5600 6219 -81 516 103 0 0 chr12 91432387 91432465 -52353990 + L1MA5 LINE L1 6216 6293 -7 21 57 0 0 chr12 91432469 91432504 -52353951 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr12 91432605 91432650 -52353805 + AT_rich Low_complexity Low_complexity 1 45 0 292 188 12 12 chr12 91432750 91432835 -52353620 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 419 328 87 18 chr12 91433788 91434017 -52352438 - MIR SINE MIR -15 247 3 12381 33 1 1 chr12 91434126 91436409 -52350046 - L1PA3 LINE L1 0 6155 3882 25 75 0 0 chr12 91438056 91438109 -52348346 + AT_rich Low_complexity Low_complexity 1 53 0 1251 183 72 54 chr12 91439063 91439396 -52347059 - MER44D DNA MER2_type 0 609 1 195 184 0 0 chr12 91439862 91439900 -52346555 + GA-rich Low_complexity Low_complexity 5 42 0 313 300 143 9 chr12 91440176 91440406 -52346049 + L1MC5 LINE L1 6963 7223 -738 399 298 51 0 chr12 91440560 91440738 -52345717 + L1MC5 LINE L1 7305 7491 -470 2057 78 0 21 chr12 91440761 91441045 -52345410 - AluY SINE Alu -18 293 16 22 56 0 0 chr12 91442034 91442070 -52344385 + AT_rich Low_complexity Low_complexity 1 36 0 291 309 53 32 chr12 91442483 91442577 -52343878 - MIR3 SINE MIR -104 104 9 1982 148 40 8 chr12 91444737 91445088 -52341367 - THE1B LTR MaLR -2 362 1 598 235 152 44 chr12 91446205 91446559 -52339896 + MER57A LTR ERV1 34 398 -5 223 301 60 68 chr12 91446592 91446725 -52339730 - L2 LINE L2 -4 3309 3178 2831 142 85 17 chr12 91448000 91448576 -52337879 - L1MA3 LINE L1 0 7724 7110 4583 201 34 12 chr12 91448682 91449765 -52336690 - L1MA3 LINE L1 -814 6751 5645 4142 227 15 4 chr12 91449769 91450754 -52335701 - L1MA3 LINE L1 -2975 4590 3595 998 192 0 0 chr12 91450752 91450919 -52335536 - L1MA3 LINE L1 -6916 649 483 * 2597 204 10 18 chr12 91450946 91451440 -52335015 - L1MA3 LINE L1 -7060 505 16 1760 283 44 10 chr12 91451979 91452686 -52333769 + MER97b DNA MER1_type? 30 760 -293 5072 137 30 11 chr12 91452717 91453945 -52332510 + L1PA13 LINE L1 4916 6159 -4 21 36 0 0 chr12 91454024 91454052 -52332403 + AT_rich Low_complexity Low_complexity 1 28 0 2794 10 0 0 chr12 91454245 91454556 -52331899 - AluYa5 SINE Alu 0 311 1 252 59 0 0 chr12 91454860 91454894 -52331561 + (TAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 91456271 91456293 -52330162 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr12 91456666 91456711 -52329744 + AT_rich Low_complexity Low_complexity 1 45 0 216 274 11 11 chr12 91456878 91456973 -52329482 + T-rich Low_complexity Low_complexity 3 97 0 311 320 33 11 chr12 91456976 91457157 -52329298 + MER97b DNA MER1_type? 868 1052 -1 310 340 98 36 chr12 91457464 91457770 -52328685 + LTR16C LTR ERVL 156 480 -11 26 30 0 0 chr12 91458414 91458447 -52328008 + AT_rich Low_complexity Low_complexity 1 33 0 2145 120 13 3 chr12 91458751 91459059 -52327396 - AluSq SINE Alu -2 311 1 1047 218 102 30 chr12 91459617 91460011 -52326444 + MER110A LTR ERV1 1 422 -46 202 229 0 0 chr12 91460195 91460243 -52326212 + (TA)n Simple_repeat Simple_repeat 1 48 0 643 103 93 0 chr12 91460279 91460376 -52326079 - AluSp/q SINE Alu -13 300 195 370 140 49 7 chr12 91460376 91460519 -52325936 + (TA)n Simple_repeat Simple_repeat 1 149 0 1289 253 51 35 chr12 91460523 91460954 -52325501 + LTR40a LTR ERVL 82 519 0 301 351 63 11 chr12 91461118 91461309 -52325146 - MIR SINE MIR -29 233 33 31 58 0 0 chr12 91462207 91462259 -52324196 + AT_rich Low_complexity Low_complexity 1 52 0 38 68 0 0 chr12 91462313 91462386 -52324069 + AT_rich Low_complexity Low_complexity 1 73 0 25 75 0 0 chr12 91462493 91462546 -52323909 + AT_rich Low_complexity Low_complexity 1 53 0 201 189 44 33 chr12 91462846 91462936 -52323519 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 3151 182 65 47 chr12 91463054 91463838 -52322617 - L1MA10 LINE L1 -29 6305 5508 5119 180 30 15 chr12 91463846 91464995 -52321460 - L1MA5 LINE L1 -1 6299 5110 2020 119 14 0 chr12 91464995 91465314 -52321141 - AluSx SINE Alu 0 323 1 5119 180 30 15 chr12 91465314 91465991 -52320464 - L1MA5 LINE L1 -1190 5110 4445 753 242 119 30 chr12 91466003 91466432 -52320023 - L1MA5 LINE L1 -2659 3487 3021 817 317 62 18 chr12 91466463 91466851 -52319604 + L1PA12 LINE L1 10 414 -7167 254 276 67 19 chr12 91467396 91467501 -52318954 + L1M2 LINE L1 709 818 -6031 427 315 69 39 chr12 91467583 91467843 -52318612 + L1M2 LINE L1 796 1063 -5786 983 273 32 40 chr12 91468091 91468524 -52317931 + L1PA12 LINE L1 1809 2327 -5257 6050 168 11 5 chr12 91468531 91469623 -52316832 + L1PA12 LINE L1 2467 3565 -4019 324 203 27 0 chr12 91469723 91469797 -52316658 - AluS SINE Alu -227 76 1 275 87 43 0 chr12 91469799 91469845 -52316610 + L1PA12 LINE L1 3602 3649 -3935 1022 88 0 7 chr12 91469863 91469999 -52316456 + AluSq/x SINE Alu 1 135 -177 2217 114 0 3 chr12 91469999 91470305 -52316150 + AluSx SINE Alu 1 305 -7 1762 155 0 13 chr12 91470312 91470615 -52315840 + AluSx SINE Alu 1 299 -13 7035 248 36 21 chr12 91470624 91472721 -52313734 + L1 LINE L1 3659 5786 -1798 1873 208 44 7 chr12 91472728 91473179 -52313276 - L1 LINE L1 -1797 4349 3882 195 304 115 40 chr12 91473272 91473420 -52313035 + L2 LINE L2 3114 3272 0 1594 237 62 55 chr12 91473447 91473545 -52312910 - L1 LINE L1 -3136 3010 2914 270 0 0 0 chr12 91473545 91473575 -52312880 + (TG)n Simple_repeat Simple_repeat 1 30 0 1594 237 62 55 chr12 91473575 91474100 -52312355 - L1 LINE L1 -3232 2914 2382 252 247 144 0 chr12 91474475 91474572 -52311883 - HAL1 LINE L1 -894 1613 1503 406 278 48 44 chr12 91474692 91474919 -52311536 - L1ME LINE L1 -652 5495 5268 328 264 350 0 chr12 91475026 91475166 -52311289 + MER5A DNA MER1_type 1 189 0 232 274 155 18 chr12 91475283 91475619 -52310836 - L1ME LINE L1 -1646 4483 4102 319 319 71 71 chr12 91476074 91476606 -52309849 - L1ME LINE L1 -5282 837 306 21 36 0 0 chr12 91476835 91476863 -52309592 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 91477891 91477912 -52308543 + AT_rich Low_complexity Low_complexity 1 21 0 274 338 86 26 chr12 91479256 91479407 -52307048 - MIR SINE MIR -101 161 2 25 0 0 0 chr12 91479829 91479854 -52306601 + AT_rich Low_complexity Low_complexity 1 25 0 345 300 0 30 chr12 91481553 91481653 -52304802 + MER58 DNA MER1_type 9 105 -2315 354 163 62 25 chr12 91481710 91481790 -52304665 + MER58 DNA MER1_type 2334 2416 -4 252 338 125 53 chr12 91482054 91482486 -52303969 + L2 LINE L2 2198 2660 -654 2183 260 141 21 chr12 91482595 91483727 -52302728 + L1ME1 LINE L1 3998 5265 -881 885 286 61 33 chr12 91483834 91484345 -52302110 + L1ME1 LINE L1 5263 5787 -379 621 180 16 0 chr12 91484351 91484473 -52301982 - MLT1B LTR MaLR -266 124 1 393 275 61 0 chr12 91484488 91484619 -52301836 + L1ME1 LINE L1 6007 6145 -21 1825 137 44 72 chr12 91485372 91485758 -52300697 + THE1C LTR MaLR 1 375 0 7463 187 68 35 chr12 91485759 91487470 -52298985 + THE1C-int LTR MaLR 2 1651 0 1658 126 37 113 chr12 91487470 91487876 -52298579 + THE1C LTR MaLR 1 375 0 25 51 0 0 chr12 91487898 91487937 -52298518 + AT_rich Low_complexity Low_complexity 1 39 0 2142 110 0 0 chr12 91488163 91488486 -52297969 + AluSx SINE Alu 1 323 0 560 167 0 0 chr12 91489116 91489224 -52297231 - L1MA8 LINE L1 -5 6286 6179 30 69 0 0 chr12 91490957 91491015 -52295440 + AT_rich Low_complexity Low_complexity 1 58 0 2840 13 0 0 chr12 91491138 91491452 -52295003 + AluYb8 SINE Alu 1 314 -4 1314 221 84 3 chr12 91491530 91491838 -52294617 - MER67C LTR ERV1 -307 403 71 1097 43 7 0 chr12 91491869 91492007 -52294448 - L1PA4 LINE L1 -3402 2744 2606 * 17553 43 3 1 chr12 91492002 91495403 -52291052 + L1PA4 LINE L1 2746 6155 0 1919 139 10 10 chr12 91495421 91495730 -52290725 + AluSc SINE Alu 1 309 0 186 43 0 0 chr12 91496185 91496208 -52290247 + (TG)n Simple_repeat Simple_repeat 1 23 0 360 0 0 0 chr12 91496211 91496251 -52290204 + (TA)n Simple_repeat Simple_repeat 2 41 0 285 89 0 0 chr12 91496291 91496336 -52290119 + (CA)n Simple_repeat Simple_repeat 2 46 0 987 250 52 54 chr12 91496336 91496780 -52289675 + L1MA9 LINE L1 5794 6236 -76 222 190 0 35 chr12 91496781 91496839 -52289616 + (TA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr12 91496869 91496894 -52289561 + AT_rich Low_complexity Low_complexity 1 25 0 1244 242 44 11 chr12 91498380 91498744 -52287711 - L1M4 LINE L1 -1210 4936 4561 1554 284 67 39 chr12 91498750 91499680 -52286775 - L1M4 LINE L1 -1466 4680 3725 235 231 0 0 chr12 91499685 91499737 -52286718 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 349 284 39 8 chr12 91499762 91499889 -52286566 - L1M4 LINE L1 -3555 2591 2461 21 0 0 0 chr12 91501224 91501245 -52285210 + AT_rich Low_complexity Low_complexity 1 21 0 655 229 154 34 chr12 91501661 91502045 -52284410 + L1MC2 LINE L1 2049 2478 -3948 1339 119 10 0 chr12 91502071 91502272 -52284183 + L1MA7 LINE L1 5781 5983 -308 547 140 9 0 chr12 91502272 91502379 -52284076 + L1MA7 LINE L1 6184 6291 0 1403 153 63 60 chr12 91502399 91502700 -52283755 - AluJb SINE Alu -10 302 1 6999 223 72 45 chr12 91502701 91503436 -52283019 + L1MC2 LINE L1 2514 3228 -3396 2299 62 10 7 chr12 91503436 91503728 -52282727 - AluY SINE Alu -18 293 1 1415 211 0 32 chr12 91503728 91504036 -52282419 - AluJo SINE Alu -14 298 1 6999 223 72 45 chr12 91504036 91507297 -52279158 + L1MC2 LINE L1 3227 6616 -8 3539 49 0 7 chr12 91508273 91508724 -52277731 + LTR7 LTR ERV1 1 448 -2 7992 76 3 57 chr12 91508726 91509967 -52276488 + HERVH LTR ERV1 1 1174 -6539 18508 90 58 35 chr12 91510074 91513042 -52273413 - HERVH LTR ERV1 -4228 3485 448 7234 117 2 18 chr12 91513142 91514293 -52272162 + HERVH LTR ERV1 1864 2995 -4718 6205 84 1 2 chr12 91514272 91515126 -52271329 + HERVH LTR ERV1 3140 3992 -3721 * 4318 139 1 3 chr12 91515129 91515792 -52270663 + HERVH LTR ERV1 4488 5149 -2564 1332 128 22 18 chr12 91515789 91516016 -52270439 + HERVH LTR ERV1 5597 5824 -1889 * 2478 82 45 13 chr12 91516008 91516388 -52270067 + HERVH LTR ERV1 7322 7713 0 3222 70 23 7 chr12 91516388 91516829 -52269626 + LTR7 LTR ERV1 1 448 -2 36 40 0 0 chr12 91517148 91517198 -52269257 + AT_rich Low_complexity Low_complexity 1 50 0 249 33 0 0 chr12 91517524 91517554 -52268901 + (TTA)n Simple_repeat Simple_repeat 3 32 0 25 0 0 0 chr12 91517802 91517827 -52268628 + AT_rich Low_complexity Low_complexity 1 25 0 329 278 14 0 chr12 91518339 91518411 -52268044 - MER5B DNA MER1_type 0 178 106 204 67 0 0 chr12 91518998 91519028 -52267427 + (A)n Simple_repeat Simple_repeat 1 30 0 404 283 82 13 chr12 91519761 91519937 -52266518 + MLT1E LTR MaLR 9 197 -370 207 0 0 0 chr12 91520367 91520390 -52266065 + (TG)n Simple_repeat Simple_repeat 2 24 0 1271 263 70 58 chr12 91520819 91521318 -52265137 - LTR40a LTR ERVL -14 505 1 370 318 26 53 chr12 91521320 91521584 -52264871 - L1 LINE L1 -2028 4118 3862 1605 223 111 50 chr12 91521664 91522269 -52264186 + MLT1E1 LTR MaLR 13 654 0 193 354 20 0 chr12 91522585 91522684 -52263771 + L2 LINE L2 3212 3312 -1 330 26 0 0 chr12 91523435 91523474 -52262981 + (TG)n Simple_repeat Simple_repeat 1 39 0 364 296 58 72 chr12 91523490 91523713 -52262742 - L2 LINE L2 -164 3149 2930 342 308 54 19 chr12 91523794 91524098 -52262357 - MLT1J2 LTR MaLR 0 549 210 19973 171 37 22 chr12 91524477 91526373 -52260082 - L1MA2 LINE L1 0 7723 5857 1333 106 10 24 chr12 91526373 91526581 -52259874 - L1PA11 LINE L1 -10 6164 5960 19973 171 37 22 chr12 91526581 91528521 -52257934 - L1MA2 LINE L1 -1866 5857 3948 309 51 0 0 chr12 91528521 91528560 -52257895 + (TA)n Simple_repeat Simple_repeat 2 40 0 19973 171 37 22 chr12 91528560 91532313 -52254142 - L1MA2 LINE L1 -3775 3948 14 21 0 0 0 chr12 91532317 91532338 -52254117 + AT_rich Low_complexity Low_complexity 1 21 0 365 301 71 57 chr12 91533137 91533503 -52252952 + L1MEc LINE L1 786 1128 -5090 871 236 87 77 chr12 91533540 91533706 -52252749 + L1ME3 LINE L1 5568 5731 -431 5357 133 26 22 chr12 91533706 91534730 -52251725 - L1PA15 LINE L1 -3 6162 5130 871 236 87 77 chr12 91534730 91534952 -52251503 + L1ME3 LINE L1 5731 5960 -202 300 53 0 0 chr12 91536437 91536475 -52249980 + (TG)n Simple_repeat Simple_repeat 2 39 0 2126 110 0 0 chr12 91536513 91536831 -52249624 - AluSg SINE Alu 0 318 1 456 147 31 16 chr12 91537079 91537208 -52249247 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 33 0 0 chr12 91537814 91537844 -52248611 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr12 91538635 91538665 -52247790 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 91538938 91538959 -52247496 + AT_rich Low_complexity Low_complexity 1 21 0 383 307 5 73 chr12 91539199 91539391 -52247064 - MLT1J2 LTR MaLR -230 220 42 195 129 0 0 chr12 91539438 91539469 -52246986 + (A)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr12 91539784 91539814 -52246641 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr12 91540053 91540083 -52246372 + AT_rich Low_complexity Low_complexity 1 30 0 888 68 4 15 chr12 91541101 91541231 -52245224 - L1ME LINE L1 -354 5808 5677 8542 103 7 2 chr12 91542277 91543514 -52242941 + L1P LINE L1 3 1245 -4901 189 0 0 0 chr12 91543767 91543788 -52242667 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr12 91543788 91543809 -52242646 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr12 91543883 91543909 -52242546 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 91543976 91543998 -52242457 + AT_rich Low_complexity Low_complexity 1 22 0 8666 34 5 7 chr12 91544470 91546336 -52240119 - L1PA4 LINE L1 0 6155 4294 328 60 143 0 chr12 91546336 91546420 -52240035 + L1P LINE L1 3571 3666 -2480 25102 43 11 1 chr12 91546542 91549716 -52236739 + L1P LINE L1 2126 5332 -814 5308 137 26 22 chr12 91549971 91550989 -52235466 - L1PA13 LINE L1 0 6163 5130 526 263 77 29 chr12 91551001 91551210 -52235245 + L1ME3 LINE L1 5742 5960 -202 321 26 0 0 chr12 91552697 91552735 -52233720 + (TG)n Simple_repeat Simple_repeat 2 39 0 312 27 0 0 chr12 91552773 91552810 -52233645 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 983 167 0 0 chr12 91552812 91552962 -52233493 - AluSg/x SINE Alu -31 279 130 913 221 0 54 chr12 91552973 91553177 -52233278 - AluJo SINE Alu -119 193 1 28 29 0 0 chr12 91553860 91553895 -52232560 + AT_rich Low_complexity Low_complexity 1 35 0 284 167 14 0 chr12 91554078 91554150 -52232305 + (TA)n Simple_repeat Simple_repeat 1 73 0 210 45 68 0 chr12 91554213 91554257 -52232198 + (TA)n Simple_repeat Simple_repeat 1 47 0 220 197 33 33 chr12 91554908 91554969 -52231486 - MIR SINE MIR -30 232 172 21 0 0 0 chr12 91554969 91554990 -52231465 + AT_rich Low_complexity Low_complexity 1 21 0 1651 169 41 35 chr12 91555119 91555462 -52230993 - MER7A DNA MER2_type -1 345 3 497 251 106 14 chr12 91555620 91555827 -52230628 - L1ME3A LINE L1 -107 6063 5838 220 229 0 0 chr12 91556256 91556304 -52230151 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 387 0 0 0 chr12 91556318 91556361 -52230094 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr12 91556582 91556603 -52229852 + AT_rich Low_complexity Low_complexity 1 21 0 2192 140 8 27 chr12 91557077 91557448 -52229007 - THE1B LTR MaLR 0 364 1 395 353 65 11 chr12 91557785 91558060 -52228395 - LTR16B LTR ERVL -147 317 28 311 245 153 75 chr12 91558320 91558602 -52227853 - HERV16 LTR ERVL -173 4823 4520 1067 265 113 25 chr12 91559049 91559170 -52227285 - L1M4 LINE L1 -1988 4158 4049 1211 207 55 71 chr12 91559170 91559551 -52226904 + THE1C LTR MaLR 1 375 0 1067 265 113 25 chr12 91559551 91559943 -52226512 - L1M4 LINE L1 -2097 4049 3600 264 207 17 17 chr12 91560356 91560414 -52226041 - L1MCc LINE L1 -6257 166 109 1037 250 62 74 chr12 91561287 91561735 -52224720 + L1ME1 LINE L1 5620 6062 -104 334 270 61 52 chr12 91561852 91561967 -52224488 - MER82 DNA MER2_type -89 564 449 455 214 0 0 chr12 91562152 91562236 -52224219 - MER82 DNA MER2_type -559 94 11 2282 286 56 52 chr12 91562246 91563703 -52222752 + L1M4 LINE L1 2853 4315 -1831 239 185 123 0 chr12 91563706 91563771 -52222684 + L1M4 LINE L1 5324 5396 -750 225 175 0 0 chr12 91564017 91564057 -52222398 + L1P LINE L1 3906 3945 -2201 1452 219 98 8 chr12 91564057 91564445 -52222010 - LTR22 LTR ERVK 0 509 87 7556 100 29 15 chr12 91564511 91565677 -52220778 + L1P LINE L1 4164 5345 -801 4900 262 42 13 chr12 91565787 91567366 -52219089 - L1P LINE L1 -1585 4561 2930 1574 207 10 3 chr12 91567366 91567665 -52218790 - AluSx SINE Alu -11 301 1 4900 262 42 13 chr12 91567665 91567761 -52218694 - L1P LINE L1 -3216 2930 2838 339 392 56 60 chr12 91568135 91568454 -52218001 - L2 LINE L2 -36 3236 2919 802 325 37 23 chr12 91568622 91568976 -52217479 + MLT1I LTR MaLR 46 404 -5 198 351 13 13 chr12 91569620 91569697 -52216758 - MIR SINE MIR -68 140 64 449 319 7 0 chr12 91569776 91569911 -52216544 + MIR SINE MIR 67 202 -60 198 103 0 0 chr12 91569940 91569969 -52216486 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 974 225 50 31 chr12 91570436 91570756 -52215699 + MER4B-int LTR ERV1 522 847 -5911 1102 80 205 6 chr12 91570777 91570964 -52215491 + MER4B-int LTR ERV1 794 942 -5816 342 0 0 0 chr12 91570964 91571002 -52215453 + (TG)n Simple_repeat Simple_repeat 1 38 0 4343 87 54 7 chr12 91571027 91571726 -52214729 + MER4B-int LTR ERV1 1764 2495 -4103 1135 176 94 4 chr12 91571726 91571959 -52214496 - LTR8 LTR ERV1 -434 257 4 1483 112 24 36 chr12 91571979 91572228 -52214227 - THE1B LTR MaLR 0 364 119 1943 120 3 11 chr12 91572535 91572839 -52213616 + AluSg SINE Alu 1 302 0 491 115 13 0 chr12 91573546 91573624 -52212831 + MADE1 DNA Mariner 2 80 0 209 194 0 0 chr12 91573863 91573899 -52212556 + (TATG)n Simple_repeat Simple_repeat 4 39 0 232 248 129 0 chr12 91574206 91574307 -52212148 - L1M4 LINE L1 -1817 4329 4216 2298 87 0 6 chr12 91574919 91575230 -52211225 + AluY SINE Alu 1 309 -2 2332 76 6 29 chr12 91575230 91575573 -52210882 + L1PA6 LINE L1 5820 6154 0 21 0 0 0 chr12 91576006 91576027 -52210428 + AT_rich Low_complexity Low_complexity 1 21 0 240 330 60 25 chr12 91577020 91577338 -52209117 - L1MEc LINE L1 -4657 1739 1411 286 265 0 41 chr12 91577346 91577444 -52209011 - ERVL LTR ERVL -3426 2338 2245 321 313 55 83 chr12 91577565 91577894 -52208561 - L1M2 LINE L1 -5907 942 561 4236 182 30 5 chr12 91578067 91579574 -52206881 - L1PA16 LINE L1 -190 5976 4433 461 284 109 64 chr12 91579774 91579868 -52206587 + L1ME1 LINE L1 4519 4607 -1539 2167 82 4 4 chr12 91579868 91580179 -52206276 + AluSc SINE Alu 1 311 0 461 284 109 64 chr12 91580179 91580552 -52205903 + L1ME1 LINE L1 4607 5014 -1132 2658 92 20 3 chr12 91580552 91580910 -52205545 + THE1B LTR MaLR 1 364 0 461 284 109 64 chr12 91580910 91580943 -52205512 + L1ME1 LINE L1 5014 5044 -1102 776 209 31 21 chr12 91581043 91581234 -52205221 + L1M1 LINE L1 13 205 -7360 1289 292 56 23 chr12 91581336 91581908 -52204547 + L1ME1 LINE L1 5570 6160 -6 22 0 0 0 chr12 91582867 91582889 -52203566 + AT_rich Low_complexity Low_complexity 1 22 0 2183 64 20 20 chr12 91583318 91583615 -52202840 - AluY SINE Alu -11 300 4 268 333 69 26 chr12 91583619 91583850 -52202605 - L1ME LINE L1 -605 5557 5317 453 173 0 0 chr12 91583989 91584064 -52202391 - AluJo SINE Alu -2 300 226 724 223 11 17 chr12 91584064 91584239 -52202216 - AluJo SINE Alu -125 187 14 331 253 0 0 chr12 91585122 91585205 -52201250 + MERVL LTR ERVL 897 979 -4506 23 54 0 0 chr12 91585361 91585398 -52201057 + AT_rich Low_complexity Low_complexity 1 37 0 480 344 33 25 chr12 91585626 91585902 -52200553 + MERVL LTR ERVL 1681 1958 -3806 741 193 51 28 chr12 91586271 91586447 -52200008 - MER3 DNA MER1_type -19 190 11 4238 132 16 17 chr12 91586454 91587146 -52199309 + HSMAR2 DNA Mariner 611 1301 -1 392 354 25 0 chr12 91587315 91587473 -52198982 + L2 LINE L2 3150 3311 -2 180 77 0 0 chr12 91587636 91587662 -52198793 + (CA)n Simple_repeat Simple_repeat 1 26 0 34 115 0 0 chr12 91587699 91587795 -52198660 + AT_rich Low_complexity Low_complexity 1 96 0 1454 154 33 20 chr12 91589704 91590009 -52196446 - L1MA2 LINE L1 -53 6251 5943 1480 203 38 9 chr12 91590013 91591020 -52195435 - L1M1 LINE L1 -5689 1876 744 848 248 69 47 chr12 91591413 91591731 -52194724 - MLT1A1 LTR MaLR 0 365 41 256 243 40 40 chr12 91592204 91592278 -52194177 + MERVL LTR ERVL 1853 1926 -3559 348 327 88 23 chr12 91592829 91593046 -52193409 + L1ME4a LINE L1 5891 6121 0 1161 208 15 23 chr12 91593153 91593413 -52193042 - Tigger3(Golem) DNA MER2_type -1 3028 2771 629 207 7 55 chr12 91593419 91593564 -52192891 - Tigger3(Golem) DNA MER2_type -2891 138 1 21 0 0 0 chr12 91594255 91594276 -52192179 + AT_rich Low_complexity Low_complexity 1 21 0 1537 82 26 0 chr12 91595762 91595995 -52190460 - HERVH LTR ERV1 -7474 239 1 3490 49 0 7 chr12 91595997 91596448 -52190007 - LTR7 LTR ERV1 -2 448 1 2360 94 45 16 chr12 91596448 91596829 -52189626 - HERVH LTR ERV1 0 7713 7322 807 213 28 14 chr12 91596821 91597032 -52189423 - HERVH LTR ERV1 -1889 5824 5611 * 310 294 16 0 chr12 91597108 91597234 -52189221 - HERVH LTR ERV1 -2621 5092 4965 1081 251 43 31 chr12 91597456 91598047 -52188408 + L1MEc LINE L1 2049 2478 -3948 3780 153 34 8 chr12 91598047 91598686 -52187769 - Tigger1 DNA MER2_type -2 2416 1761 2229 102 26 20 chr12 91598818 91599160 -52187295 - MLT2A1 LTR ERVL -100 344 1 3823 210 95 42 chr12 91600229 91600777 -52185678 + L1MC3 LINE L1 6004 6521 -1264 261 0 0 0 chr12 91600777 91600806 -52185649 + (TA)n Simple_repeat Simple_repeat 2 30 0 3823 210 95 42 chr12 91600806 91601426 -52185029 + L1MC3 LINE L1 6521 7234 -551 1269 211 3 53 chr12 91601907 91602206 -52184249 + MER74C LTR ERVL 176 459 -1 781 195 98 6 chr12 91602555 91602729 -52183726 + LTR47A LTR ERVL 261 450 -2 244 207 0 0 chr12 91603956 91604014 -52182441 + (TA)n Simple_repeat Simple_repeat 1 58 0 321 254 35 13 chr12 91604029 91604166 -52182289 - MSTD LTR MaLR -3 393 227 284 250 0 15 chr12 91604193 91604261 -52182194 - THE1C LTR MaLR -7 368 302 608 193 36 49 chr12 91604505 91604728 -52181727 - L1M1 LINE L1 -7332 233 14 21 36 0 0 chr12 91604731 91604759 -52181696 + AT_rich Low_complexity Low_complexity 1 28 0 323 329 58 0 chr12 91605705 91605842 -52180613 + MLT1J1 LTR MaLR 31 175 -271 1043 185 10 30 chr12 91605866 91606066 -52180389 - MER58A DNA MER1_type -1 223 28 673 217 96 18 chr12 91606166 91606332 -52180123 - L1ME LINE L1 -503 5663 5485 727 326 135 10 chr12 91606462 91606766 -52179689 + MLT1H LTR MaLR 12 353 -196 268 135 57 177 chr12 91606993 91607134 -52179321 - L1 LINE L1 -1112 5034 4911 * 1548 281 61 11 chr12 91607104 91607823 -52178632 - L1 LINE L1 -2736 3410 2656 232 348 54 0 chr12 91608450 91608542 -52177913 + L2 LINE L2 3137 3233 -39 330 331 143 38 chr12 91608878 91609325 -52177130 + L2 LINE L2 2211 2704 -610 1640 56 0 0 chr12 91609516 91609712 -52176743 - AluY SINE Alu -115 196 1 415 220 63 35 chr12 91609774 91609985 -52176470 - L1ME LINE L1 -679 5491 5273 349 331 16 8 chr12 91610084 91610211 -52176244 + L2 LINE L2 2913 3040 -273 428 220 0 33 chr12 91610306 91610583 -52175872 + (TA)n Simple_repeat Simple_repeat 1 267 0 234 103 0 52 chr12 91610642 91610700 -52175755 + LTR66 LTR ERVL 396 450 -160 275 155 35 0 chr12 91610750 91610808 -52175647 + L1MCa LINE L1 2009 2068 -4358 242 175 0 18 chr12 91610828 91610885 -52175570 - LTR66 LTR ERVL -172 438 383 261 0 0 0 chr12 91610905 91610934 -52175521 + (CA)n Simple_repeat Simple_repeat 2 30 0 204 111 0 0 chr12 91610933 91610969 -52175486 + (TA)n Simple_repeat Simple_repeat 2 37 0 * 531 212 54 43 chr12 91611061 91611270 -52175185 - L1M4 LINE L1 -1096 5050 4840 806 223 0 30 chr12 91611287 91611484 -52174971 + MER3 DNA MER1_type 2 192 -17 240 289 84 76 chr12 91611517 91611887 -52174568 - L1M4 LINE L1 -1319 4827 4455 225 257 15 103 chr12 91611934 91612070 -52174385 - L1M4 LINE L1 -2365 3781 3658 921 231 69 3 chr12 91612099 91612389 -52174066 - L1M4 LINE L1 -3146 3000 2692 1244 254 110 34 chr12 91612393 91612830 -52173625 - MLT1E LTR MaLR 0 593 124 382 307 22 40 chr12 91612936 91613161 -52173294 - L1MEc LINE L1 -6132 264 44 571 263 13 0 chr12 91613172 91613328 -52173127 - L1M4 LINE L1 -1539 4607 4450 22 0 0 0 chr12 91613328 91613350 -52173105 + AT_rich Low_complexity Low_complexity 1 22 0 258 253 112 76 chr12 91613395 91613699 -52172756 - L1M4 LINE L1 -1854 4292 3978 322 237 52 10 chr12 91613704 91613801 -52172654 - L1M4 LINE L1 -2179 3967 3867 30 27 0 0 chr12 91613939 91613976 -52172479 + AT_rich Low_complexity Low_complexity 1 37 0 3279 121 16 14 chr12 91614183 91614678 -52171777 + LTR3b LTR ERVK 1 496 -4 340 73 0 0 chr12 91614679 91614720 -52171735 + LTR3b LTR ERVK 460 500 0 277 191 0 29 chr12 91615121 91615189 -52171266 + HERVK3 LTR ERVK 68 133 -7110 633 160 0 9 chr12 91615194 91615300 -52171155 - LTR3b LTR ERVK -395 105 1 7348 30 2 0 chr12 91615528 91616406 -52170049 - L1PA3 LINE L1 -1503 4643 3764 7350 36 1 3 chr12 91616406 91617975 -52168480 + L1PA3 LINE L1 4624 6190 0 571 288 56 65 chr12 91618055 91618610 -52167845 - L1ME LINE L1 -356 5806 5257 201 74 0 0 chr12 91618922 91618949 -52167506 + (CATA)n Simple_repeat Simple_repeat 2 28 0 231 129 194 16 chr12 91620258 91620320 -52166135 - MLT1G1 LTR MaLR -5 590 518 512 299 126 14 chr12 91620481 91620695 -52165760 - MLT1H1 LTR MaLR -287 268 31 401 164 0 15 chr12 91620728 91620795 -52165660 - Tigger5 DNA MER2_type 0 2323 2258 431 213 0 12 chr12 91620843 91620923 -52165532 - Tigger5 DNA MER2_type -2244 79 1 235 268 18 0 chr12 91620923 91620979 -52165476 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 240 330 47 9 chr12 91622212 91622318 -52164137 - MIR SINE MIR -151 111 2 2457 99 39 8 chr12 91622889 91623244 -52163211 + THE1B-int LTR MaLR 1215 1580 0 2107 115 49 55 chr12 91623244 91623610 -52162845 + THE1B LTR MaLR 1 364 0 782 230 29 0 chr12 91624686 91624860 -52161595 + MER58A DNA MER1_type 45 223 -1 652 215 0 57 chr12 91625868 91626026 -52160429 - FRAM SINE Alu -16 150 2 221 335 154 0 chr12 91626543 91626725 -52159730 - MIR SINE MIR -1 261 52 200 215 54 15 chr12 91628312 91628442 -52158013 + (TA)n Simple_repeat Simple_repeat 2 136 0 261 119 0 0 chr12 91628442 91628484 -52157971 + (CA)n Simple_repeat Simple_repeat 2 43 0 1573 191 64 6 chr12 91628579 91628924 -52157531 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr12 91628949 91628978 -52157477 + AT_rich Low_complexity Low_complexity 1 29 0 312 244 84 25 chr12 91629207 91629326 -52157129 - L1MC4 LINE L1 -1302 6740 6615 225 215 56 19 chr12 91629339 91629446 -52157009 + (TA)n Simple_repeat Simple_repeat 1 111 0 1435 236 75 16 chr12 91631899 91632340 -52154115 - MLT1C LTR MaLR 0 467 1 2020 192 124 12 chr12 91632560 91633045 -52153410 + MER67A LTR ERV1 1 539 -4 228 389 79 7 chr12 91633119 91633258 -52153197 + L2 LINE L2 3107 3255 -17 387 0 0 0 chr12 91635219 91635262 -52151193 + (CA)n Simple_repeat Simple_repeat 1 43 0 233 200 0 0 chr12 91637101 91637146 -52149309 + (TG)n Simple_repeat Simple_repeat 1 45 0 41630 40 21 2 chr12 91637626 91643684 -52142771 + L1PA3 LINE L1 6 6181 0 1630 219 15 12 chr12 91644444 91644805 -52141650 - MLT1A1 LTR MaLR 0 365 4 30 45 0 0 chr12 91645473 91645517 -52140938 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 91645555 91645576 -52140879 + AT_rich Low_complexity Low_complexity 1 21 0 266 309 64 44 chr12 91646087 91646336 -52140119 - L1ME LINE L1 -342 5779 5526 22 0 0 0 chr12 91646385 91646407 -52140048 + AT_rich Low_complexity Low_complexity 1 22 0 1537 166 168 53 chr12 91646436 91646810 -52139645 - MLT2B2 LTR ERVL 0 515 99 282 64 106 0 chr12 91646863 91646910 -52139545 - L1PA13 LINE L1 -1 6162 6111 246 266 86 102 chr12 91647003 91647131 -52139324 + MLT1E1-int LTR MaLR 1143 1268 -103 285 307 21 64 chr12 91647142 91647282 -52139173 + MLT1E1-int LTR MaLR 1238 1371 0 840 237 140 4 chr12 91647282 91647510 -52138945 + MLT1E1 LTR MaLR 1 259 -395 2777 244 63 28 chr12 91647541 91648657 -52137798 + L1MC2 LINE L1 5137 6325 -19 2205 106 3 10 chr12 91648848 91649159 -52137296 + AluSp SINE Alu 1 309 -4 21 36 0 0 chr12 91649426 91649454 -52137001 + AT_rich Low_complexity Low_complexity 1 28 0 577 344 39 59 chr12 91649644 91650034 -52136421 + MLT1I LTR MaLR 22 403 -6 2041 148 3 0 chr12 91650560 91650864 -52135591 + AluSx SINE Alu 1 305 -7 182 333 0 14 chr12 91651561 91651630 -52134825 - MIR SINE MIR -101 161 94 292 407 47 0 chr12 91652383 91652533 -52133922 - L2 LINE L2 0 3272 3116 1890 147 22 38 chr12 91653391 91653759 -52132696 - THE1C LTR MaLR -13 362 1 26 0 0 0 chr12 91653952 91653978 -52132477 + AT_rich Low_complexity Low_complexity 1 26 0 200 217 0 0 chr12 91654114 91654160 -52132295 + (TA)n Simple_repeat Simple_repeat 2 47 0 619 247 53 60 chr12 91655011 91655294 -52131161 - L1MA9 LINE L1 -30 6282 6002 411 38 0 0 chr12 91657503 91657556 -52128899 + (TG)n Simple_repeat Simple_repeat 1 53 0 1667 133 0 0 chr12 91657770 91658051 -52128404 - AluSx SINE Alu 0 329 49 23 33 0 0 chr12 91658247 91658277 -52128178 + AT_rich Low_complexity Low_complexity 1 30 0 1912 158 3 0 chr12 91658291 91658589 -52127866 - AluSx SINE Alu -13 299 1 21 82 0 0 chr12 91658815 91658864 -52127591 + AT_rich Low_complexity Low_complexity 1 49 0 483 293 79 49 chr12 91659620 91660075 -52126380 + MLT1H LTR MaLR 1 502 -47 766 238 6 22 chr12 91660104 91660285 -52126170 + MER58A DNA MER1_type 46 223 -1 338 141 0 16 chr12 91660574 91660638 -52125817 + (CA)n Simple_repeat Simple_repeat 2 64 0 319 368 66 0 chr12 91660851 91661003 -52125452 - L2 LINE L2 -332 2981 2820 748 221 129 8 chr12 91661025 91661265 -52125190 + MER33 DNA MER1_type 2 270 -54 1631 311 100 25 chr12 91661299 91662260 -52124195 - L2 LINE L2 -505 2809 1707 466 159 35 44 chr12 91662330 91662443 -52124012 - L1MC2 LINE L1 -8 6336 6225 565 253 6 6 chr12 91662464 91662638 -52123817 - L1M4 LINE L1 -1200 4946 4773 4253 179 30 0 chr12 91662658 91663457 -52122998 - L1MC2 LINE L1 -161 6183 5361 768 178 2 0 chr12 91663457 91663592 -52122863 + LTR28 LTR ERV1 1 794 -904 22 35 0 0 chr12 91665509 91665538 -52120917 + AT_rich Low_complexity Low_complexity 1 29 0 351 0 0 0 chr12 91667048 91667087 -52119368 + (CA)n Simple_repeat Simple_repeat 1 39 0 213 154 0 0 chr12 91667291 91667330 -52119125 + A-rich Low_complexity Low_complexity 1 39 0 1453 192 152 8 chr12 91668040 91668583 -52117872 + MER97b DNA MER1_type? 206 879 -174 947 250 0 0 chr12 91668904 91669100 -52117355 - MER58A DNA MER1_type 0 224 29 22 0 0 0 chr12 91669329 91669351 -52117104 + AT_rich Low_complexity Low_complexity 1 22 0 464 311 34 34 chr12 91671017 91671255 -52115200 - L2 LINE L2 -834 2480 2243 236 389 30 20 chr12 91671629 91671832 -52114623 + L2 LINE L2 2596 2800 -514 1526 64 0 5 chr12 91671874 91672078 -52114377 - AluY SINE Alu 0 311 109 1218 54 0 7 chr12 91672080 91672228 -52114227 - AluY SINE Alu -164 147 1 288 170 0 0 chr12 91673693 91673746 -52112709 + (TA)n Simple_repeat Simple_repeat 1 53 0 8384 222 26 114 chr12 91673754 91677147 -52109308 - L1PA16 LINE L1 -151 6731 3041 1621 205 10 0 chr12 91677147 91677445 -52109010 - AluSx SINE Alu -11 301 1 8384 222 26 114 chr12 91677445 91677852 -52108603 - L1PA16 LINE L1 -3841 3041 2600 1014 137 6 0 chr12 91677852 91678013 -52108442 + AluSq SINE Alu 152 313 0 8384 222 26 114 chr12 91678013 91678661 -52107794 - L1PA16 LINE L1 -4282 2600 2555 2328 112 29 32 chr12 91678661 91679037 -52107418 + THE1C LTR MaLR 1 375 0 8384 222 26 114 chr12 91679037 91679552 -52106903 - L1PA16 LINE L1 -4327 2555 1996 344 340 42 0 chr12 91679985 91680129 -52106326 + L1MC/D LINE L1 5532 5681 -2127 240 86 0 0 chr12 91680528 91680563 -52105892 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr12 91681352 91681384 -52105071 + AT_rich Low_complexity Low_complexity 1 32 0 629 207 7 55 chr12 91682078 91682223 -52104232 + Tigger3(Golem) DNA MER2_type 1 138 -2891 1269 192 15 23 chr12 91682229 91682489 -52103966 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 237 310 97 28 chr12 91682596 91682812 -52103643 - L1ME4a LINE L1 0 6121 5891 27 103 0 0 chr12 91683754 91683851 -52102604 + AT_rich Low_complexity Low_complexity 1 97 0 249 280 0 0 chr12 91683946 91684021 -52102434 + (TA)n Simple_repeat Simple_repeat 2 76 0 2408 70 0 0 chr12 91684369 91684670 -52101785 + AluY SINE Alu 1 301 -10 2005 230 37 73 chr12 91684670 91685231 -52101224 + MER68 LTR ERV1 12 552 -10 362 334 30 57 chr12 91685242 91685574 -52100881 + MLT1I LTR MaLR 80 402 -7 28 61 0 0 chr12 91686302 91686351 -52100104 + AT_rich Low_complexity Low_complexity 1 49 0 28 61 0 0 chr12 91686568 91686617 -52099838 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr12 91686783 91686805 -52099650 + AT_rich Low_complexity Low_complexity 1 22 0 2332 209 44 47 chr12 91686900 91687602 -52098853 - L1MC3 LINE L1 -1 7784 7085 21 57 0 0 chr12 91687957 91687992 -52098463 + AT_rich Low_complexity Low_complexity 1 35 0 239 127 0 127 chr12 91688136 91688178 -52098277 - MLT2B1 LTR ERVL -2 518 485 261 0 0 0 chr12 91688178 91688207 -52098248 + (CA)n Simple_repeat Simple_repeat 2 30 0 239 127 0 127 chr12 91688207 91688227 -52098228 - MLT2B1 LTR ERVL -35 485 464 4264 262 40 11 chr12 91688237 91689572 -52096883 + L1MA9 LINE L1 1104 2137 -4516 1889 22 0 0 chr12 91689644 91689868 -52096587 - L1PA4 LINE L1 -2 6153 5930 1676 277 73 16 chr12 91689957 91691039 -52095416 + L1MA9 LINE L1 2844 3996 -2736 1020 186 21 80 chr12 91691009 91691439 -52095016 + L1MA9 LINE L1 5497 5981 -751 * 2475 193 33 0 chr12 91691448 91691935 -52094520 + L1MA9 LINE L1 6366 6868 -30 21 0 0 0 chr12 91691935 91691956 -52094499 + AT_rich Low_complexity Low_complexity 1 21 0 1855 203 25 24 chr12 91692022 91698752 -52087703 + L1PA16 LINE L1 25 6860 -9 412 339 0 8 chr12 91698785 91698906 -52087549 + MER5A DNA MER1_type 61 180 -9 220 229 0 0 chr12 91699019 91699067 -52087388 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 387 0 0 0 chr12 91699081 91699124 -52087331 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr12 91699345 91699366 -52087089 + AT_rich Low_complexity Low_complexity 1 21 0 1897 153 77 3 chr12 91699840 91700179 -52086276 - THE1B LTR MaLR 0 364 1 1701 161 62 31 chr12 91700858 91701211 -52085244 - THE1B LTR MaLR 0 364 1 10637 113 21 1 chr12 91701211 91702760 -52083695 - THE1B-int LTR MaLR 0 1580 1 2278 140 5 24 chr12 91702760 91703131 -52083324 - THE1B LTR MaLR 0 364 1 352 353 44 53 chr12 91703307 91703741 -52082714 - LTR16B LTR ERVL -7 457 28 324 259 143 70 chr12 91704001 91704302 -52082153 - HERV16 LTR ERVL -173 4823 4501 858 301 45 73 chr12 91704379 91705084 -52081371 - ERVL LTR ERVL -619 4377 3868 1255 338 70 29 chr12 91705260 91705717 -52080738 - ERVL LTR ERVL -1427 3809 3372 2257 159 57 18 chr12 91705717 91706157 -52080298 + MSTB2 LTR MaLR 1 457 0 1255 338 70 29 chr12 91706157 91707043 -52079412 - ERVL LTR ERVL -1864 3372 2443 331 253 0 0 chr12 91708445 91708528 -52077927 + MERVL LTR ERVL 897 979 -4506 23 54 0 0 chr12 91708684 91708721 -52077734 + AT_rich Low_complexity Low_complexity 1 37 0 1254 338 38 21 chr12 91708949 91709605 -52076850 + MERVL LTR ERVL 1681 2347 -3417 264 326 60 25 chr12 91709606 91709925 -52076530 + L1MEc LINE L1 1736 2065 -4656 21 0 0 0 chr12 91710917 91710938 -52075517 + AT_rich Low_complexity Low_complexity 1 21 0 258 276 23 0 chr12 91711389 91711476 -52074979 - L1MC4 LINE L1 -1339 6703 6615 234 236 18 0 chr12 91711477 91711532 -52074923 + (TA)n Simple_repeat Simple_repeat 2 57 0 546 219 58 50 chr12 91712053 91712351 -52074104 + MER61D LTR ERV1 344 1305 -15 1775 269 82 1 chr12 91712436 91713127 -52073328 - L1M4 LINE L1 -800 5346 4600 26 30 0 0 chr12 91713472 91713505 -52072950 + AT_rich Low_complexity Low_complexity 1 33 0 267 368 33 13 chr12 91714028 91714180 -52072275 + MIR SINE MIR 60 214 -48 226 340 76 7 chr12 91716170 91716314 -52070141 - L2 LINE L2 -78 3235 3082 226 340 76 7 chr12 91716851 91716995 -52069460 - L2 LINE L2 -78 3235 3082 626 347 86 38 chr12 91717069 91717544 -52068911 - L2 LINE L2 -347 2967 2470 200 277 53 21 chr12 91717528 91717622 -52068833 - MIR SINE MIR -129 133 37 * 1036 289 49 59 chr12 91718089 91718685 -52067770 + MLT1E LTR MaLR 1 590 -3 1009 263 53 37 chr12 91718741 91719121 -52067334 - MLT1H1 LTR MaLR -4 557 173 238 349 47 39 chr12 91720861 91720990 -52065465 - L2 LINE L2 0 3272 3143 248 296 0 34 chr12 91721189 91721277 -52065178 + MLT2E LTR ERVL 36 120 -508 236 152 69 0 chr12 91721702 91721770 -52064685 + L1MD3 LINE L1 2608 2648 -3892 216 134 82 21 chr12 91721773 91721870 -52064585 + (TA)n Simple_repeat Simple_repeat 2 104 0 250 189 14 54 chr12 91721874 91721948 -52064507 + L1MD3 LINE L1 2652 2722 -3818 465 209 0 0 chr12 91721948 91722034 -52064421 + FRAM/FAM SINE Alu 1 85 -91 3466 257 83 17 chr12 91722034 91723420 -52063035 + L1MD3 LINE L1 4176 5653 -887 1162 144 16 5 chr12 91723413 91723607 -52062848 + L1PA16 LINE L1 5949 6144 -22 * 5743 273 108 38 chr12 91723638 91726189 -52060266 + L1MD3 LINE L1 5656 8384 -5 242 220 0 0 chr12 91726387 91726399 -52060056 + L1MC4 LINE L1 6641 6652 -1390 180 0 0 0 chr12 91726399 91726419 -52060036 + (TC)n Simple_repeat Simple_repeat 2 21 0 242 220 0 0 chr12 91726419 91726465 -52059990 + L1MC4 LINE L1 6651 6699 -1343 239 259 47 0 chr12 91726469 91726554 -52059901 - L1MC4 LINE L1 -1339 6703 6615 504 143 0 0 chr12 91726565 91726649 -52059806 + (TG)n Simple_repeat Simple_repeat 2 85 0 234 0 0 0 chr12 91726649 91726675 -52059780 + (TA)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr12 91727755 91727780 -52058675 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 91727897 91727918 -52058537 + AT_rich Low_complexity Low_complexity 1 21 0 344 307 52 47 chr12 91728536 91728906 -52057549 + L1MC1 LINE L1 5401 5764 -398 21 0 0 0 chr12 91729037 91729058 -52057397 + AT_rich Low_complexity Low_complexity 1 21 0 1932 181 30 26 chr12 91729215 91729641 -52056814 + L1MC1 LINE L1 5906 6333 0 264 260 96 51 chr12 91729721 91730013 -52056442 + L1ME LINE L1 3836 4140 -2006 362 307 157 17 chr12 91730259 91730552 -52055903 + L1ME LINE L1 5006 5339 -807 434 286 76 6 chr12 91730589 91730778 -52055677 + L1ME LINE L1 5402 5605 -557 1803 279 60 20 chr12 91731168 91731717 -52054738 - MLT1E LTR MaLR 0 593 23 1215 290 104 33 chr12 91732386 91733440 -52053015 + L1ME3A LINE L1 2350 3520 -2626 2121 95 3 0 chr12 91733440 91733753 -52052702 + AluSp SINE Alu 1 314 0 1215 290 104 33 chr12 91733753 91734027 -52052428 + L1ME3A LINE L1 3520 3773 -2373 22 0 0 0 chr12 91734029 91734051 -52052404 + AT_rich Low_complexity Low_complexity 1 22 0 1479 268 77 26 chr12 91734211 91734793 -52051662 + L1ME3A LINE L1 5452 6063 -107 1835 155 41 32 chr12 91734951 91735293 -52051162 + MER7A DNA MER2_type 3 345 -1 21 0 0 0 chr12 91735422 91735443 -52051012 + AT_rich Low_complexity Low_complexity 1 21 0 220 197 33 33 chr12 91735443 91735504 -52050951 + MIR SINE MIR 172 232 -30 210 45 68 0 chr12 91736155 91736199 -52050256 + (TA)n Simple_repeat Simple_repeat 1 47 0 284 167 14 0 chr12 91736262 91736334 -52050121 + (TA)n Simple_repeat Simple_repeat 2 74 0 28 29 0 0 chr12 91736517 91736552 -52049903 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr12 91737399 91737433 -52049022 + AT_rich Low_complexity Low_complexity 1 34 0 424 62 108 0 chr12 91737478 91737543 -52048912 + L1PA13 LINE L1 6092 6163 0 997 189 91 37 chr12 91737600 91737927 -52048528 - MSTD LTR MaLR -11 385 1 364 209 121 0 chr12 91738046 91738137 -52048318 - MSTC LTR MaLR -326 102 1 1405 210 25 59 chr12 91738257 91738661 -52047794 + MLT1B LTR MaLR 1 390 0 3439 159 7 3 chr12 91739942 91740528 -52045927 - L1PA15 LINE L1 -4 6161 5574 4170 181 9 17 chr12 91740529 91741523 -52044932 - L1PA15 LINE L1 -676 5489 4504 2281 182 14 14 chr12 91741520 91741965 -52044490 + L1P LINE L1 3644 4088 -2058 * 1507 341 86 34 chr12 91743398 91744423 -52042032 + L2 LINE L2 1968 3040 -273 390 196 20 34 chr12 91744516 91744664 -52041791 + (TA)n Simple_repeat Simple_repeat 2 147 0 185 342 51 25 chr12 91744681 91744760 -52041695 + L2 LINE L2 3137 3217 -55 234 85 51 51 chr12 91745447 91745506 -52040949 + GA-rich Low_complexity Low_complexity 2 60 0 280 321 176 3 chr12 91745806 91746012 -52040443 - L1MC4 LINE L1 -1211 6597 6402 1060 294 40 23 chr12 91746067 91746588 -52039867 - L1ME2 LINE L1 -10 6154 5625 409 269 6 6 chr12 91746607 91746782 -52039673 - AluY SINE Alu 0 301 127 214 373 17 6 chr12 91746824 91747001 -52039454 + CT-rich Low_complexity Low_complexity 1 179 0 1128 218 125 48 chr12 91747143 91747520 -52038935 - MSTB1 LTR MaLR -2 430 25 534 296 59 0 chr12 91748094 91748246 -52038209 - MER69A DNA AcHobo -15 162 2 5246 164 32 24 chr12 91748415 91749449 -52037006 - L1MC1 LINE L1 -9 6324 5283 30 27 0 0 chr12 91749572 91749609 -52036846 + AT_rich Low_complexity Low_complexity 1 37 0 1035 214 53 40 chr12 91749758 91750061 -52036394 - L1MD2 LINE L1 0 6359 6053 688 204 0 7 chr12 91751270 91751412 -52035043 + L1MC4 LINE L1 7778 7918 -124 329 217 217 0 chr12 91751452 91751567 -52034888 + L1MC4 LINE L1 7903 8042 0 247 336 69 17 chr12 91751750 91751866 -52034589 + L2 LINE L2 2554 2675 -639 336 48 0 0 chr12 91752529 91752571 -52033884 + (CA)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr12 91752635 91752664 -52033791 + AT_rich Low_complexity Low_complexity 1 29 0 196 341 88 0 chr12 91752668 91752759 -52033696 + MIR SINE MIR 63 161 -101 443 324 144 14 chr12 91753728 91753950 -52032505 - MIR SINE MIR -9 253 3 4351 161 25 18 chr12 91754064 91754857 -52031598 + L1MB2 LINE L1 5320 6118 -53 14489 202 57 10 chr12 91756144 91757887 -52028568 - L1PB1 LINE L1 0 6867 5207 432 0 0 0 chr12 91757887 91757935 -52028520 + (TTA)n Simple_repeat Simple_repeat 2 49 0 14489 202 57 10 chr12 91757935 91762736 -52023719 - L1PB1 LINE L1 -1660 5207 6 1062 122 13 130 chr12 91762751 91762989 -52023466 - MER101B LTR ERV1 -360 210 1 1450 209 3 62 chr12 91764232 91764557 -52021898 + AluJo SINE Alu 1 306 -6 2216 133 0 0 chr12 91766010 91766319 -52020136 + AluSc SINE Alu 1 309 0 310 299 60 78 chr12 91766722 91766989 -52019466 + L1M4 LINE L1 4910 5171 -975 261 0 0 0 chr12 91766989 91767018 -52019437 + (CA)n Simple_repeat Simple_repeat 2 30 0 310 299 60 78 chr12 91767018 91767084 -52019371 + L1M4 LINE L1 5171 5237 -909 26 0 0 0 chr12 91767295 91767321 -52019134 + AT_rich Low_complexity Low_complexity 1 26 0 27 62 0 0 chr12 91768106 91768154 -52018301 + AT_rich Low_complexity Low_complexity 1 48 0 2199 111 3 10 chr12 91768596 91768902 -52017553 + AluSp SINE Alu 1 304 -9 212 374 81 16 chr12 91769360 91769483 -52016972 + L2 LINE L2 3134 3264 -8 23 54 0 0 chr12 91769506 91769543 -52016912 + AT_rich Low_complexity Low_complexity 1 37 0 572 284 35 25 chr12 91769755 91769952 -52016503 - MIR SINE MIR -3 259 61 21 0 0 0 chr12 91770950 91770971 -52015484 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 91771350 91771379 -52015076 + AT_rich Low_complexity Low_complexity 1 29 0 1269 238 37 39 chr12 91771899 91772274 -52014181 - MLT1B LTR MaLR -5 500 8 385 204 154 2 chr12 91772275 91772389 -52014066 - MLT1B-int LTR MaLR -8 1716 1533 5431 100 8 8 chr12 91772405 91773204 -52013251 - L1PB2 LINE L1 -2 6149 5351 1641 226 17 20 chr12 91773206 91773564 -52012891 - MLT1B-int LTR MaLR -117 1618 1262 296 232 12 12 chr12 91773640 91773722 -52012733 - MLT1B-int LTR MaLR -968 767 686 1658 234 20 10 chr12 91773858 91774251 -52012204 - MLT1B-int LTR MaLR -653 718 322 931 189 12 18 chr12 91774253 91774417 -52012038 + AluJb SINE Alu 132 294 -18 1462 214 28 3 chr12 91774418 91774740 -52011715 - MLT1B-int LTR MaLR -1040 331 2 754 249 96 93 chr12 91774743 91775109 -52011346 - MLT1B LTR MaLR -4 370 4 449 204 43 80 chr12 91775109 91775271 -52011184 - L1M3 LINE L1 -435 5748 5593 189 361 16 0 chr12 91775277 91775338 -52011117 - L2 LINE L2 -23 3290 3229 1945 164 8 46 chr12 91775437 91775827 -52010628 - THE1C LTR MaLR 0 375 1 9617 124 20 49 chr12 91775827 91777426 -52009029 - THE1C-int LTR MaLR 0 1580 29 872 180 20 72 chr12 91777432 91777757 -52008698 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr12 91778363 91778389 -52008066 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 91778813 91778835 -52007620 + AT_rich Low_complexity Low_complexity 1 22 0 1097 188 31 22 chr12 91781518 91781742 -52004713 + AluJo SINE Alu 72 297 -15 270 165 24 35 chr12 91781757 91781842 -52004613 + GA-rich Low_complexity Low_complexity 3 86 0 37332 88 9 12 chr12 91781952 91788112 -51998343 + L1PA5 LINE L1 11 6154 0 209 370 121 34 chr12 91788357 91788622 -51997833 - L2 LINE L2 -634 2680 2393 187 216 27 0 chr12 91789036 91789073 -51997382 - L2 LINE L2 -4 3268 3231 629 193 83 17 chr12 91789802 91789983 -51996472 - L1MA8 LINE L1 -68 6223 6031 379 344 81 16 chr12 91790117 91790425 -51996030 + L1ME3A LINE L1 5594 5921 -249 210 37 0 0 chr12 91790497 91790524 -51995931 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 205 200 0 0 chr12 91792051 91792091 -51994364 + (TA)n Simple_repeat Simple_repeat 2 41 0 317 125 71 0 chr12 91792162 91792218 -51994237 - MER8 DNA MER2_type 0 239 180 2111 153 56 39 chr12 91792224 91792483 -51993972 + Tigger2 DNA MER2_type 2280 2533 -185 2450 106 6 14 chr12 91792483 91792840 -51993615 + THE1A LTR MaLR 2 355 0 11142 105 17 1 chr12 91792840 91794395 -51992060 + THE1A-int LTR MaLR 1 1580 0 2233 119 6 30 chr12 91794397 91794759 -51991696 + THE1A LTR MaLR 3 355 0 2111 153 56 39 chr12 91794759 91794926 -51991529 + Tigger2 DNA MER2_type 2533 2717 -1 382 228 36 36 chr12 91795235 91795402 -51991053 + L1M4 LINE L1 2851 3017 -3129 448 296 67 52 chr12 91795681 91795951 -51990504 - L2 LINE L2 -4 3309 3036 356 274 55 109 chr12 91795985 91796186 -51990269 + L2 LINE L2 2257 2446 -868 271 304 6 19 chr12 91796372 91796530 -51989925 + (TA)n Simple_repeat Simple_repeat 2 157 0 2074 114 3 0 chr12 91796743 91797050 -51989405 - L1PA13 LINE L1 -4 6159 5852 442 311 112 16 chr12 91797116 91797421 -51989034 + L1M4 LINE L1 2936 3269 -2877 238 310 60 22 chr12 91797639 91797871 -51988584 + L1M4 LINE L1 3924 4164 -1982 613 320 34 4 chr12 91797889 91798123 -51988332 + L1MEc LINE L1 29 269 -6127 371 305 151 40 chr12 91798243 91798788 -51987667 + L1M4 LINE L1 4243 4847 -1299 296 280 41 18 chr12 91799254 91799436 -51987019 + L1PA8A LINE L1 5326 5510 -621 2310 97 3 3 chr12 91799554 91799864 -51986591 + AluSp SINE Alu 1 310 -3 239 77 0 26 chr12 91800060 91800099 -51986356 + (TA)n Simple_repeat Simple_repeat 1 38 0 1599 201 0 3 chr12 91800355 91800669 -51985786 + AluSq SINE Alu 1 313 0 218 116 23 0 chr12 91801157 91801200 -51985255 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 213 330 189 9 chr12 91801916 91802022 -51984433 + L2 LINE L2 3145 3269 -3 22 70 0 0 chr12 91802178 91802221 -51984234 + AT_rich Low_complexity Low_complexity 1 43 0 636 68 0 0 chr12 91802320 91802408 -51984047 + L1P LINE L1 3600 3687 -2459 261 228 35 0 chr12 91802535 91802592 -51983863 - L2 LINE L2 0 3313 3255 2308 94 0 3 chr12 91803309 91803617 -51982838 - AluY SINE Alu -4 307 1 185 32 0 65 chr12 91804663 91804694 -51981761 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr12 91804790 91804821 -51981634 + AT_rich Low_complexity Low_complexity 1 31 0 278 275 0 0 chr12 91806465 91806545 -51979910 + T-rich Low_complexity Low_complexity 1 80 0 181 241 19 19 chr12 91806554 91806608 -51979847 - MIR3 SINE MIR -34 174 121 454 284 41 0 chr12 91807612 91807781 -51978674 + L1MA3 LINE L1 12 187 -7378 18694 175 34 19 chr12 91807883 91812795 -51973660 + L1MA3 LINE L1 104 4942 -2782 200 35 35 0 chr12 91812795 91812824 -51973631 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 18694 175 34 19 chr12 91812824 91815134 -51971321 + L1MA3 LINE L1 4942 7433 -291 2781 3 0 0 chr12 91815134 91815438 -51971017 + AluYa5 SINE Alu 1 304 -7 18694 175 34 19 chr12 91815438 91815579 -51970876 + L1MA3 LINE L1 7433 7570 -154 1379 124 13 0 chr12 91815680 91815914 -51970541 + L1MA3 LINE L1 6068 6304 -1 398 183 12 0 chr12 91816292 91816374 -51970081 - L1PB4 LINE L1 0 6156 6074 833 226 73 45 chr12 91816608 91816819 -51969636 - MER114 LTR ERV 0 648 444 2404 70 0 13 chr12 91816819 91817131 -51969324 - AluY SINE Alu 0 311 4 833 226 73 45 chr12 91817131 91817344 -51969111 - MER114 LTR ERV -204 444 212 25 0 0 0 chr12 91817690 91817715 -51968740 + AT_rich Low_complexity Low_complexity 1 25 0 391 125 25 38 chr12 91817815 91817895 -51968560 + L1MB1 LINE L1 6085 6163 -5 340 252 0 39 chr12 91818185 91818288 -51968167 - MIR SINE MIR -138 124 26 247 371 48 27 chr12 91819564 91819750 -51966705 + L3 LINE CR1 674 863 -714 21 0 0 0 chr12 91819852 91819873 -51966582 + AT_rich Low_complexity Low_complexity 1 21 0 1467 212 40 53 chr12 91820165 91820543 -51965912 + MLT1A2 LTR MaLR 2 374 0 21 36 0 0 chr12 91820974 91821002 -51965453 + AT_rich Low_complexity Low_complexity 1 28 0 454 212 73 0 chr12 91821822 91821878 -51964577 + MER53 DNA DNA 14 64 -125 2265 57 3 20 chr12 91821878 91822178 -51964277 - AluY SINE Alu -16 295 1 454 212 73 0 chr12 91822178 91822258 -51964197 + MER53 DNA DNA 64 160 -29 190 268 0 0 chr12 91822287 91822328 -51964127 - MIR SINE MIR -174 88 48 23 33 0 0 chr12 91822766 91822796 -51963659 + AT_rich Low_complexity Low_complexity 1 30 0 239 284 135 0 chr12 91823973 91824047 -51962408 - MER63 DNA MER1_type -118 718 9 24 0 0 0 chr12 91824151 91824175 -51962280 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr12 91824560 91824604 -51961851 + AT_rich Low_complexity Low_complexity 1 44 0 698 190 29 0 chr12 91825949 91826086 -51960369 + MLT1A1 LTR MaLR 5 145 -220 255 324 10 29 chr12 91826107 91826209 -51960246 - MIR SINE MIR -148 114 15 418 259 42 69 chr12 91826906 91827122 -51959333 + MIR SINE MIR 8 217 -45 217 273 36 64 chr12 91827121 91827231 -51959224 + MIR SINE MIR 47 153 -109 * 1531 266 146 4 chr12 91827236 91827714 -51958741 - MLT1G1 LTR MaLR -2 593 48 460 69 100 6 chr12 91827859 91828019 -51958436 + (TA)n Simple_repeat Simple_repeat 1 175 0 1818 208 14 3 chr12 91828778 91829144 -51957311 - L1MA9 LINE L1 -404 5908 5539 620 212 0 0 chr12 91829148 91829294 -51957161 + L1M3 LINE L1 4520 4665 -1481 1250 221 4 15 chr12 91829309 91829580 -51956875 + AluJo SINE Alu 1 268 -44 2957 190 37 23 chr12 91829662 91830490 -51955965 + L1M3 LINE L1 4657 5502 -666 1219 201 77 22 chr12 91830771 91831095 -51955360 - Cheshire DNA MER1_type -48 2372 2031 * 1662 206 77 20 chr12 91831093 91831496 -51954959 - Cheshire DNA MER1_type -1675 745 320 353 250 32 8 chr12 91831484 91831608 -51954847 - Cheshire DNA MER1_type -2252 168 42 * 289 267 60 0 chr12 91831771 91831887 -51954568 + L1MC1 LINE L1 3563 3685 -2461 4042 186 32 49 chr12 91831905 91832838 -51953617 + L1MC1 LINE L1 5417 6333 0 1187 230 47 3 chr12 91833116 91833412 -51953043 + L1MA8 LINE L1 5981 6289 -2 1143 259 76 11 chr12 91833729 91834099 -51952356 - L1ME2 LINE L1 -243 5921 5528 2176 122 7 0 chr12 91834725 91835028 -51951427 - AluSc SINE Alu -4 305 1 235 407 26 16 chr12 91835316 91835505 -51950950 - L2 LINE L2 -351 2963 2773 458 310 80 10 chr12 91835923 91836123 -51950332 + MIR SINE MIR 49 262 0 1486 199 65 24 chr12 91837259 91837630 -51948825 - MLT1B LTR MaLR 0 390 5 489 257 84 79 chr12 91839435 91839649 -51946806 - MER20 DNA MER1_type -4 215 1 301 363 73 59 chr12 91840734 91841156 -51945299 + L2 LINE L2 2843 3270 -2 361 373 144 4 chr12 91842023 91842286 -51944169 + L2 LINE L2 2925 3224 -48 2457 58 3 0 chr12 91842392 91842702 -51943753 + AluY SINE Alu 1 311 0 668 366 81 23 chr12 91842847 91843404 -51943051 + L1 LINE L1 10 598 -6251 278 224 0 0 chr12 91843517 91843584 -51942871 + L1 LINE L1 3470 3536 -3312 * 2632 220 28 74 chr12 91843576 91844497 -51941958 + L1 LINE L1 3788 4666 -2182 1916 172 120 3 chr12 91844516 91844899 -51941556 + MSTA LTR MaLR 1 428 0 2643 182 67 14 chr12 91844908 91845474 -51940981 + L1PA16 LINE L1 5570 6165 -1 216 294 39 39 chr12 91846992 91847094 -51939361 + MER5A DNA MER1_type 2 103 -86 195 214 92 31 chr12 91847243 91847341 -51939114 + MER5C DNA MER1_type 197 300 -24 683 221 65 125 chr12 91847351 91847808 -51938647 + MER34B LTR ERV1 5 416 -126 529 129 11 0 chr12 91848022 91848115 -51938340 - L1MA8 LINE L1 -4 6287 6194 247 314 41 8 chr12 91848718 91848839 -51937616 - L1MEd LINE L1 -5942 177 53 289 305 94 23 chr12 91849473 91849601 -51936854 + MER69 DNA AcHobo 2 138 -2388 2194 213 58 0 chr12 91850584 91851049 -51935406 + MLT1D LTR MaLR 14 505 0 197 353 17 59 chr12 91851184 91851303 -51935152 - L2 LINE L2 -1 3312 3199 22 56 0 0 chr12 91851826 91851862 -51934593 + AT_rich Low_complexity Low_complexity 1 36 0 231 61 0 0 chr12 91852315 91852348 -51934107 + (CA)n Simple_repeat Simple_repeat 2 34 0 1556 178 44 3 chr12 91853187 91853485 -51932970 + AluSx SINE Alu 1 310 -2 2445 116 34 0 chr12 91854079 91854457 -51931998 - HSMAR1 DNA Mariner -896 391 1 260 313 74 34 chr12 91854458 91854634 -51931821 + MLT1H LTR MaLR 354 536 -13 339 291 78 53 chr12 91856148 91856354 -51930101 + MIR SINE MIR 52 262 0 212 363 48 8 chr12 91856374 91856498 -51929957 + MIR SINE MIR 19 147 -61 342 0 0 0 chr12 91857304 91857342 -51929113 + (TG)n Simple_repeat Simple_repeat 1 38 0 1092 210 18 92 chr12 91857526 91857907 -51928548 + MLT1A1 LTR MaLR 1 353 -12 1492 265 38 17 chr12 91858031 91858453 -51928002 + LTR40a LTR ERVL 70 500 -19 25 0 0 0 chr12 91859978 91860003 -51926452 + AT_rich Low_complexity Low_complexity 1 25 0 325 330 70 0 chr12 91860558 91860673 -51925782 - MER5A DNA MER1_type 0 189 67 559 271 119 53 chr12 91860731 91861160 -51925295 + L2 LINE L2 2555 3312 -1 1020 77 65 0 chr12 91861344 91861499 -51924956 - L1PA13 LINE L1 0 6163 5999 324 70 0 0 chr12 91861870 91861913 -51924542 + (CA)n Simple_repeat Simple_repeat 1 43 0 2130 124 0 3 chr12 91862102 91862401 -51924054 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr12 91862471 91862497 -51923958 + AT_rich Low_complexity Low_complexity 1 26 0 241 307 79 18 chr12 91862846 91862960 -51923495 - MIR SINE MIR -114 148 28 498 280 25 45 chr12 91863354 91863511 -51922944 - MER5A DNA MER1_type -34 155 2 252 327 10 0 chr12 91863937 91864041 -51922414 + MER117 DNA MER1_type 11 115 -82 1875 229 96 69 chr12 91864571 91864981 -51921474 - MLT1E1 LTR MaLR -13 641 207 1922 140 18 0 chr12 91864981 91865267 -51921188 - AluSx SINE Alu -15 297 7 1875 229 96 69 chr12 91865267 91865480 -51920975 - MLT1E1 LTR MaLR -447 207 1 568 272 144 9 chr12 91865513 91865565 -51920890 - L1ME4a LINE L1 -4 6117 6073 1544 154 74 44 chr12 91865565 91865929 -51920526 - THE1C LTR MaLR 0 375 1 568 272 144 9 chr12 91865929 91866299 -51920156 - L1ME4a LINE L1 -48 6073 5638 574 299 104 25 chr12 91866449 91866767 -51919688 + MLT1H LTR MaLR 207 549 0 546 271 90 21 chr12 91869207 91869395 -51917060 + MIR SINE MIR 62 262 0 2207 105 0 22 chr12 91869611 91869924 -51916531 - AluSc SINE Alu -3 306 1 246 334 72 25 chr12 91871242 91871425 -51915030 - MIR SINE MIR -62 146 2 200 143 71 18 chr12 91872102 91872158 -51914297 - L2 LINE L2 -612 2702 2644 1303 226 63 13 chr12 91872765 91873083 -51913372 + MER58B DNA MER1_type 1 334 -7 21 36 0 0 chr12 91873261 91873289 -51913166 + AT_rich Low_complexity Low_complexity 1 28 0 300 331 53 0 chr12 91873552 91873685 -51912770 - MIR SINE MIR -1 261 122 1891 168 20 17 chr12 91873952 91874297 -51912158 + MER7A DNA MER2_type 2 345 -1 26 0 0 0 chr12 91876051 91876077 -51910378 + AT_rich Low_complexity Low_complexity 1 26 0 518 319 8 34 chr12 91876571 91876806 -51909649 - MER110 LTR ERV1 -78 413 185 264 299 58 29 chr12 91877831 91878005 -51908450 - L1MC4 LINE L1 -73 7969 7791 23 68 0 0 chr12 91878070 91878114 -51908341 + AT_rich Low_complexity Low_complexity 1 44 0 1255 189 35 0 chr12 91878192 91878419 -51908036 + MER46A DNA MER2_type 1 235 -1 570 194 44 75 chr12 91878895 91879055 -51907400 - LTR52 LTR ERVL -25 396 242 1748 207 31 11 chr12 91879068 91879426 -51907029 - MLT1A1 LTR MaLR 0 365 1 901 229 9 28 chr12 91879430 91879648 -51906807 - LTR52 LTR ERVL -204 217 4 3238 97 25 41 chr12 91880789 91881304 -51905151 - MER9 LTR ERVK -4 507 1 229 338 134 6 chr12 91881474 91881631 -51904824 + MIR SINE MIR 5 181 -81 633 332 66 28 chr12 91881940 91882335 -51904120 + MLT1J2 LTR MaLR 37 446 -4 267 348 87 0 chr12 91882678 91882793 -51903662 + MIR SINE MIR 37 161 -101 1771 208 49 64 chr12 91882900 91883366 -51903089 + LTR42 LTR ERVL 8 466 -29 1948 140 0 0 chr12 91883452 91883738 -51902717 - AluSx SINE Alu -26 286 1 306 234 39 0 chr12 91884076 91884153 -51902302 - MLT2E LTR ERVL -515 113 34 293 299 175 38 chr12 91884260 91884471 -51901984 - MIR SINE MIR 0 262 23 294 50 0 0 chr12 91884503 91884543 -51901912 + (TG)n Simple_repeat Simple_repeat 1 40 0 1355 194 7 11 chr12 91884564 91884837 -51901618 - L1PB4 LINE L1 -3 6153 5882 25 65 0 0 chr12 91884965 91885011 -51901444 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 91885073 91885095 -51901360 + AT_rich Low_complexity Low_complexity 1 22 0 1658 201 52 11 chr12 91885095 91885459 -51900996 + MLT1B LTR MaLR 10 388 -2 1349 306 74 24 chr12 91885730 91886352 -51900103 + L1ME1 LINE L1 36 688 -5708 3467 275 55 25 chr12 91886354 91888134 -51898321 + L1ME1 LINE L1 738 2547 -3668 295 211 28 0 chr12 91888135 91888206 -51898249 + L1M4 LINE L1 4615 4687 -1459 * 2101 240 33 55 chr12 91888203 91888217 -51898238 + L1ME1 LINE L1 3993 4006 -2209 1688 198 0 0 chr12 91888217 91888510 -51897945 - AluSx SINE Alu -19 293 1 2101 240 33 55 chr12 91888510 91889366 -51897089 + L1ME1 LINE L1 4006 4844 -1371 2145 263 56 15 chr12 91889387 91890198 -51896257 + L1ME1 LINE L1 5144 5987 -248 7516 33 0 0 chr12 91890208 91891231 -51895224 - L1PA3 LINE L1 0 6155 5133 7668 40 0 1 chr12 91891231 91892174 -51894281 + L1PA3 LINE L1 4220 5161 -985 363 227 83 61 chr12 91892303 91892435 -51894020 + L1MA10 LINE L1 6192 6326 -8 1056 212 125 24 chr12 91892814 91893229 -51893226 - L1MEc LINE L1 -5214 1182 726 1965 132 55 25 chr12 91893230 91893594 -51892861 + THE1C LTR MaLR 1 375 0 368 312 87 53 chr12 91894412 91894678 -51891777 + L2 LINE L2 1732 2006 -1308 244 224 89 13 chr12 91894834 91894938 -51891517 + MLT1J2 LTR MaLR 64 159 -287 230 339 0 0 chr12 91894998 91895060 -51891395 + MLT1J2 LTR MaLR 265 326 -124 288 333 164 66 chr12 91895233 91895881 -51890574 - L2 LINE L2 -1745 1569 859 189 333 141 32 chr12 91896132 91896288 -51890167 + MIR SINE MIR 60 232 -30 29 28 0 0 chr12 91896321 91896357 -51890098 + AT_rich Low_complexity Low_complexity 1 36 0 302 370 0 10 chr12 91896360 91896460 -51889995 + L3 LINE CR1 1303 1401 -176 226 368 0 0 chr12 91897766 91897823 -51888632 - L2 LINE L2 -17 3255 3199 279 273 93 68 chr12 91899501 91899662 -51886793 + L2 LINE L2 3149 3313 0 1225 244 106 14 chr12 91900149 91900509 -51885946 + MLT1J2 LTR MaLR 1 393 -57 12717 21 0 0 chr12 91900515 91902769 -51883686 - L1PA2 LINE L1 0 6155 3902 405 39 0 0 chr12 91902874 91902925 -51883530 + (CA)n Simple_repeat Simple_repeat 1 51 0 226 262 0 0 chr12 91903049 91903110 -51883345 - MARNA DNA Mariner -316 270 210 1863 140 3 54 chr12 91903337 91903652 -51882803 + AluSg SINE Alu 1 299 -11 189 290 16 16 chr12 91903662 91903724 -51882731 - L2 LINE L2 -10 3303 3242 459 226 73 51 chr12 91904528 91904665 -51881790 - L2 LINE L2 -2 3311 3172 825 313 170 11 chr12 91904737 91905201 -51881254 - L2 LINE L2 -702 2612 2075 261 258 152 45 chr12 91906379 91906511 -51879944 - L3 LINE CR1 -821 756 611 30 45 0 0 chr12 91906722 91906766 -51879689 + AT_rich Low_complexity Low_complexity 1 44 0 2873 174 43 2 chr12 91906796 91907289 -51879166 - MLT2B1 LTR ERVL -7 513 1 2333 87 0 16 chr12 91907458 91907768 -51878687 + AluY SINE Alu 1 305 -6 1116 172 66 129 chr12 91907779 91908174 -51878281 - LTR25 LTR ERV1 -10 784 415 243 222 143 0 chr12 91908145 91908208 -51878247 - MER51A LTR ERV1 -354 280 209 * 533 131 12 0 chr12 91908399 91908483 -51877972 - MER61E LTR ERV1 -484 85 1 308 269 101 8 chr12 91908639 91908758 -51877697 - MLT1H LTR MaLR 0 549 420 22 35 0 0 chr12 91909081 91909110 -51877345 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 91909883 91909907 -51876548 + AT_rich Low_complexity Low_complexity 1 24 0 1218 94 19 0 chr12 91910989 91911148 -51875307 + AluSq SINE Alu 1 162 -151 285 220 17 0 chr12 91911309 91911368 -51875087 + MLT1H LTR MaLR 108 167 -382 303 319 76 66 chr12 91911638 91911942 -51874513 - LTR67 LTR ERVL -142 415 109 5847 105 14 7 chr12 91912034 91913055 -51873400 - L1PA7 LINE L1 -5 6149 5122 7186 38 0 17 chr12 91913055 91913984 -51872471 + L1PA7 LINE L1 4227 5139 -1007 27 0 0 0 chr12 91914059 91914086 -51872369 + GC_rich Low_complexity Low_complexity 1 27 0 198 295 98 36 chr12 91914311 91914423 -51872032 + L3 LINE CR1 1367 1485 -92 21 36 0 0 chr12 91914607 91914635 -51871820 + AT_rich Low_complexity Low_complexity 1 28 0 1708 102 4 0 chr12 91915021 91915256 -51871199 + AluSq SINE Alu 2 237 -76 493 322 88 52 chr12 91915466 91915963 -51870492 + L1M4 LINE L1 2111 2625 -3521 3073 112 80 47 chr12 91916164 91916700 -51869755 - MER41C LTR ERV1 0 554 1 1737 175 3 44 chr12 91916811 91917131 -51869324 - AluJo SINE Alu -5 307 1 422 164 109 0 chr12 91917190 91917300 -51869155 - FRAM SINE Alu -25 151 30 2515 194 57 14 chr12 91917597 91918103 -51868352 + MER44D DNA MER2_type 23 605 0 22 0 0 0 chr12 91918727 91918749 -51867706 + AT_rich Low_complexity Low_complexity 1 22 0 458 81 0 0 chr12 91919131 91919193 -51867262 - MER57A LTR ERV1 -341 62 1 511 339 164 21 chr12 91919282 91919618 -51866837 + LTR16B LTR ERVL 81 464 0 669 237 35 12 chr12 91919840 91920013 -51866442 - MER45A DNA AcHobo -1 177 1 211 170 38 19 chr12 91920216 91920269 -51866186 + CT-rich Low_complexity Low_complexity 2 55 0 823 158 17 206 chr12 91920661 91920687 -51865768 + LTR8A LTR ERV1 187 216 -511 3170 153 35 2 chr12 91920687 91921223 -51865232 - MER41C LTR ERV1 0 554 1 823 158 17 206 chr12 91921223 91921556 -51864899 + LTR8A LTR ERV1 216 478 -249 692 111 10 0 chr12 91921673 91921772 -51864683 - AluS SINE Alu -213 100 1 822 269 75 41 chr12 91921783 91922222 -51864233 - L1MC4a LINE L1 -1878 5930 5477 298 244 30 38 chr12 91922217 91922348 -51864107 + L1 LINE L1 4923 5052 -1094 * 33 0 0 0 chr12 91922435 91922468 -51863987 + AT_rich Low_complexity Low_complexity 1 33 0 6557 144 6 20 chr12 91922919 91924014 -51862441 + L1P3 LINE L1 57 1136 -4739 2252 211 48 6 chr12 91975187 91975662 -51810793 - LTR42 LTR ERVL 0 495 1 23 0 0 0 chr12 91976969 91976992 -51809463 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr12 91977446 91977492 -51808963 + AT_rich Low_complexity Low_complexity 1 46 0 200 314 100 0 chr12 91977979 91978049 -51808406 - MIR SINE MIR -107 155 79 2462 162 96 0 chr12 91978303 91978804 -51807651 - MER34C LTR ERV1 0 585 37 4741 156 63 7 chr12 91979051 91979906 -51806549 + MER4D LTR ERV1 1 903 0 3412 150 24 66 chr12 91979907 91980589 -51805866 + MER39B LTR ERV1 1 653 0 286 316 64 64 chr12 91980598 91980769 -51805686 - L2 LINE L2 -2 3311 3141 45 55 0 0 chr12 91980769 91980842 -51805613 + AT_rich Low_complexity Low_complexity 1 73 0 1575 166 31 7 chr12 91980950 91981240 -51805215 - LTR49 LTR ERV1 0 595 299 736 90 34 0 chr12 91981247 91981368 -51805087 - LTR49 LTR ERV1 -479 220 2 1906 190 22 0 chr12 91981498 91981866 -51804589 + MER57A LTR ERV1 1 376 -27 2144 137 23 9 chr12 91982886 91983236 -51803219 + THE1A LTR MaLR 1 355 0 11640 94 4 0 chr12 91983236 91984810 -51801645 + THE1A-int LTR MaLR 1 1580 0 2209 141 23 0 chr12 91984810 91985157 -51801298 + THE1A LTR MaLR 1 355 0 21 0 0 0 chr12 91985298 91985319 -51801136 + AT_rich Low_complexity Low_complexity 1 21 0 769 229 151 27 chr12 91985584 91985955 -51800500 - L1ME3A LINE L1 -8 6162 5746 219 384 0 0 chr12 91986304 91986377 -51800078 + L2 LINE L2 3241 3313 0 280 168 50 10 chr12 91986543 91986644 -51799811 + CT-rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr12 91986841 91986863 -51799592 + AT_rich Low_complexity Low_complexity 1 22 0 311 236 81 47 chr12 91989818 91989966 -51796489 + HAL1b LINE L1 907 1059 -289 374 245 37 80 chr12 91990730 91990918 -51795537 - L2 LINE L2 0 3313 3134 215 113 0 81 chr12 91990918 91990980 -51795475 + (TTATA)n Simple_repeat Simple_repeat 1 57 0 247 322 54 27 chr12 91990985 91991134 -51795321 - L2 LINE L2 -178 3135 2983 475 276 79 82 chr12 91991279 91991401 -51795054 - L2 LINE L2 -362 2952 2831 1801 147 7 0 chr12 91991401 91991674 -51794781 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr12 91991678 91991698 -51794757 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 475 276 79 82 chr12 91991698 91991911 -51794544 - L2 LINE L2 -486 2828 2613 1670 197 0 3 chr12 91992202 91992496 -51793959 + AluJo SINE Alu 1 293 -19 1053 203 50 89 chr12 91992540 91992691 -51793764 + MLT1A1 LTR MaLR 1 156 -209 1346 188 9 80 chr12 91992691 91993027 -51793428 + AluJo SINE Alu 1 312 0 1053 203 50 89 chr12 91993027 91993255 -51793200 + MLT1A1 LTR MaLR 156 365 0 511 300 93 42 chr12 91993362 91993599 -51792856 + MIR SINE MIR 14 262 0 1004 220 0 35 chr12 91994260 91994487 -51791968 - MER20 DNA MER1_type 0 219 1 354 313 68 20 chr12 91994621 91994768 -51791687 + MIR3 SINE MIR 20 173 -35 205 164 0 33 chr12 91995238 91995299 -51791156 + (TA)n Simple_repeat Simple_repeat 2 60 0 294 143 0 0 chr12 91995323 91995372 -51791083 + (TA)n Simple_repeat Simple_repeat 2 50 0 277 300 0 0 chr12 91995372 91995462 -51790993 + L1MC4 LINE L1 6614 6703 -1339 552 281 0 0 chr12 91995469 91995647 -51790808 + (TA)n Simple_repeat Simple_repeat 1 178 0 233 281 22 22 chr12 91995650 91995739 -51790716 - L1MC4 LINE L1 -1339 6703 6615 225 292 22 22 chr12 91995697 91995786 -51790669 + L1MC4 LINE L1 6615 6703 -1339 * 243 228 22 43 chr12 91995814 91995906 -51790549 + L1MC4 LINE L1 6614 6703 -1339 * 250 272 0 22 chr12 91995838 91995930 -51790525 - L1MC4 LINE L1 -1339 6703 6614 411 267 0 0 chr12 91995934 91996069 -51790386 + (TA)n Simple_repeat Simple_repeat 2 136 0 240 300 0 11 chr12 91996081 91996171 -51790284 + L1MC4 LINE L1 6615 6703 -1339 * 247 311 0 0 chr12 91996167 91996257 -51790198 + L1MC4 LINE L1 6614 6703 -1339 37 52 0 0 chr12 91996300 91996358 -51790097 + AT_rich Low_complexity Low_complexity 1 58 0 216 0 0 0 chr12 91996388 91996412 -51790043 + (TA)n Simple_repeat Simple_repeat 2 25 0 327 256 0 0 chr12 91996526 91996616 -51789839 + (CA)n Simple_repeat Simple_repeat 1 90 0 283 51 0 26 chr12 91996810 91996849 -51789606 + L1P5 LINE L1 5825 5862 -289 207 0 0 0 chr12 91996859 91996882 -51789573 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 3222 93 0 22 chr12 91996888 91997381 -51789074 - L1P5 LINE L1 -377 6490 6009 * 5645 121 38 5 chr12 91997376 91998326 -51788129 - L1P5 LINE L1 -4491 2372 1392 766 220 11 11 chr12 91998303 91998489 -51787966 - L1P5 LINE L1 -6647 216 31 * 1935 159 72 20 chr12 91998941 91999286 -51787169 + THE1B LTR MaLR 2 364 0 1211 299 115 38 chr12 92001171 92002165 -51784290 - L2 LINE L2 -4 3309 2244 540 169 47 34 chr12 92002230 92002378 -51784077 + MER96B DNA MER1_type? 240 389 -28 956 274 45 103 chr12 92002399 92002884 -51783571 + L2 LINE L2 568 1024 -2290 1005 223 15 87 chr12 92002965 92003355 -51783100 - L1MA9 LINE L1 -38 6274 5913 398 285 82 24 chr12 92003355 92003562 -51782893 + L2 LINE L2 3016 3234 -79 1052 164 77 32 chr12 92003564 92003784 -51782671 + MER39 LTR ERV1 1 230 -477 2081 164 22 3 chr12 92003788 92004148 -51782307 + MER39 LTR ERV1 341 707 0 180 0 0 0 chr12 92004381 92004401 -51782054 + (A)n Simple_repeat Simple_repeat 1 20 0 527 215 0 0 chr12 92004406 92004513 -51781942 + MER39 LTR ERV1 601 707 0 252 122 20 41 chr12 92004522 92004571 -51781884 + L2 LINE L2 3266 3313 0 300 364 88 4 chr12 92004633 92004861 -51781594 - L2 LINE L2 -1115 2199 1953 270 308 17 8 chr12 92004889 92005006 -51781449 - L2 LINE L2 -1491 1823 1706 207 291 137 46 chr12 92005789 92005964 -51780491 + MIR SINE MIR 28 218 -44 921 102 0 7 chr12 92006471 92006608 -51779847 + L1MA2 LINE L1 6169 6304 0 1574 183 16 26 chr12 92007330 92007642 -51778813 - AluJb SINE Alu -3 309 1 10383 181 16 20 chr12 92007919 92010214 -51776241 - ERVL-B1 LTR ERVL -709 5055 2704 1858 148 3 10 chr12 92010210 92010508 -51775947 - ERVL-B1 LTR ERVL -3177 2587 2292 * 918 234 92 17 chr12 92010522 92010761 -51775694 - ERVL-B1 LTR ERVL -5503 261 5 2366 208 52 4 chr12 92010764 92011260 -51775195 - MLT2B1 LTR ERVL 0 520 1 22 35 0 0 chr12 92011522 92011551 -51774904 + AT_rich Low_complexity Low_complexity 1 29 0 5362 125 15 41 chr12 92011970 92013070 -51773385 + L1PA15 LINE L1 5089 6163 -2 32 67 0 0 chr12 92013112 92013172 -51773283 + AT_rich Low_complexity Low_complexity 1 60 0 1427 248 137 17 chr12 92013622 92014081 -51772374 - MLT1E2 LTR MaLR -2 624 111 418 242 152 8 chr12 92014079 92014211 -51772244 - MLT1E2 LTR MaLR -503 151 1 * 26 30 0 0 chr12 92014341 92014374 -51772081 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 92014569 92014592 -51771863 + AT_rich Low_complexity Low_complexity 1 23 0 2332 103 0 0 chr12 92015123 92015435 -51771020 + AluSx SINE Alu 1 312 0 30 27 0 0 chr12 92016017 92016054 -51770401 + AT_rich Low_complexity Low_complexity 1 37 0 1169 255 86 35 chr12 92016129 92016608 -51769847 + MLT1D LTR MaLR 3 505 0 2082 128 172 11 chr12 92016762 92017129 -51769326 - MSTC LTR MaLR 0 428 3 379 299 223 38 chr12 92017416 92017459 -51768996 + L2 LINE L2 2673 2707 -606 2545 62 0 0 chr12 92017459 92017763 -51768692 + AluY SINE Alu 1 304 -7 379 299 223 38 chr12 92017763 92018256 -51768199 + L2 LINE L2 2707 3313 0 2856 6 0 0 chr12 92018302 92018613 -51767842 - AluY SINE Alu 0 311 1 1040 300 34 40 chr12 92019018 92019654 -51766801 - L2 LINE L2 -18 3295 2665 271 250 0 13 chr12 92019832 92019908 -51766547 + MER116 DNA Mariner 1 75 -5 2043 103 43 3 chr12 92020054 92020336 -51766119 + AluSg1 SINE Alu 1 293 -16 23 54 0 0 chr12 92020606 92020643 -51765812 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr12 92020755 92020793 -51765662 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 92021227 92021248 -51765207 + AT_rich Low_complexity Low_complexity 1 21 0 1727 167 31 10 chr12 92021755 92021871 -51764584 + AluJo SINE Alu 1 113 -199 210 37 0 0 chr12 92021871 92021898 -51764557 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1727 167 31 10 chr12 92021898 92022074 -51764381 + AluJo SINE Alu 113 299 -13 1934 108 0 7 chr12 92022092 92022413 -51764042 + AluSg SINE Alu 17 335 0 27 0 0 0 chr12 92023171 92023198 -51763257 + AT_rich Low_complexity Low_complexity 1 27 0 1013 214 41 48 chr12 92023266 92023537 -51762918 + AluJo SINE Alu 41 309 -3 353 136 30 0 chr12 92023779 92023845 -51762610 - L1MB3 LINE L1 -7 6176 6109 437 286 62 25 chr12 92024575 92024736 -51761719 + MIR SINE MIR 31 197 -65 1121 211 152 37 chr12 92024806 92025214 -51761241 - MSTB2 LTR MaLR 0 457 3 500 194 225 6 chr12 92025217 92025377 -51761078 - MSTB2-int LTR MaLR -1 1650 1456 8212 155 35 20 chr12 92025430 92026224 -51760231 - Ricksha DNA DNA -13 3233 2404 2275 135 26 13 chr12 92026224 92026610 -51759845 + L1PA13 LINE L1 5773 6163 0 8212 155 35 20 chr12 92026610 92027336 -51759119 - Ricksha DNA DNA -842 2404 1690 834 177 0 5 chr12 92027335 92027529 -51758926 - Ricksha DNA DNA -969 285 1 * 3972 259 49 73 chr12 92027531 92029070 -51757385 - MSTD-int LTR MaLR -232 1503 2 893 240 55 65 chr12 92029072 92029472 -51756983 - MSTD LTR MaLR 0 396 1 189 121 0 0 chr12 92029502 92029535 -51756920 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 249 333 147 6 chr12 92029830 92030007 -51756448 - L1ME LINE L1 -448 5722 5521 310 335 77 16 chr12 92030037 92030231 -51756224 - L1ME LINE L1 -2319 5489 5284 445 323 88 20 chr12 92030472 92031083 -51755372 - L1MC/D LINE L1 -747 5399 4854 865 182 25 98 chr12 92031141 92031377 -51755078 + MER20 DNA MER1_type 1 219 0 270 292 54 18 chr12 92032202 92032370 -51754085 - L1MC/D LINE L1 -1589 4557 4384 255 125 0 0 chr12 92032422 92032462 -51753993 + (TG)n Simple_repeat Simple_repeat 1 40 0 328 343 48 0 chr12 92032462 92032567 -51753888 - L1MC/D LINE L1 -2368 3778 3669 276 294 55 18 chr12 92035564 92035673 -51750782 + L1ME LINE L1 5537 5649 -472 240 157 0 20 chr12 92035880 92035931 -51750524 + L1ME4a LINE L1 5965 6014 -107 24 0 0 0 chr12 92036061 92036085 -51750370 + AT_rich Low_complexity Low_complexity 1 24 0 226 176 88 73 chr12 92036229 92036297 -51750158 + MER5A DNA MER1_type 100 168 -21 1510 171 18 75 chr12 92036316 92036690 -51749765 + MER67C LTR ERV1 26 403 -234 417 214 0 0 chr12 92036744 92036828 -51749627 + MER67D LTR ERV1 306 389 -125 2558 57 0 0 chr12 92036828 92037145 -51749310 + L1PA7 LINE L1 5330 5646 -508 1742 43 0 0 chr12 92037245 92037454 -51749001 + L1PA7 LINE L1 5911 6119 -35 354 126 237 82 chr12 92037454 92037471 -51748984 + MER67D LTR ERV1 359 372 -142 441 0 0 0 chr12 92037471 92037520 -51748935 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 126 237 82 chr12 92037520 92037637 -51748818 + MER67D LTR ERV1 372 514 0 21 57 0 0 chr12 92038616 92038651 -51747804 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr12 92039785 92039818 -51746637 + AT_rich Low_complexity Low_complexity 1 33 0 2207 100 0 3 chr12 92039867 92040166 -51746289 + AluY SINE Alu 1 298 -13 207 0 0 0 chr12 92040575 92040598 -51745857 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 243 0 0 0 chr12 92040597 92040624 -51745831 + (GA)n Simple_repeat Simple_repeat 2 28 0 242 29 29 0 chr12 92040636 92040671 -51745784 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 39266 75 11 3 chr12 92040804 92046901 -51739554 + L1PA5 LINE L1 11 6154 0 246 325 63 16 chr12 92047312 92047438 -51739017 + L2 LINE L2 3137 3268 -4 31 44 0 0 chr12 92048348 92048393 -51738062 + AT_rich Low_complexity Low_complexity 1 45 0 35 41 0 0 chr12 92048528 92048577 -51737878 + AT_rich Low_complexity Low_complexity 1 49 0 1302 258 60 9 chr12 92051040 92051389 -51735066 - MLT1A2 LTR MaLR 0 374 8 2020 146 128 16 chr12 92051750 92052133 -51734322 + MSTA LTR MaLR 3 428 0 5509 189 25 1 chr12 92052354 92053336 -51733119 + L1MA3 LINE L1 8 1013 -6552 26999 36 4 0 chr12 92053342 92057424 -51729031 + L1PA3 LINE L1 2052 6150 -5 26 30 0 0 chr12 92057424 92057457 -51728998 + AT_rich Low_complexity Low_complexity 1 33 0 11288 153 29 43 chr12 92057457 92058024 -51728431 + L1MA3 LINE L1 2088 2662 -4903 2344 21 7 0 chr12 92058024 92058305 -51728150 + L1PA4 LINE L1 5870 6152 -3 11288 153 29 43 chr12 92058305 92061647 -51724808 + L1MA3 LINE L1 2662 5941 -1624 3483 105 21 39 chr12 92061647 92062259 -51724196 + L1MA3 LINE L1 7113 7719 -5 5028 156 9 34 chr12 92065264 92066203 -51720252 + L1PB3 LINE L1 6306 7207 -366 395 29 58 0 chr12 92066203 92066272 -51720183 + (TA)n Simple_repeat Simple_repeat 1 73 0 5028 156 9 34 chr12 92066272 92066631 -51719824 + L1PB3 LINE L1 7207 7573 0 302 317 65 27 chr12 92066632 92066818 -51719637 + L2 LINE L2 2782 2974 -340 27365 118 8 17 chr12 92066852 92072194 -51714261 + L1PA8 LINE L1 880 6165 -7 32 57 0 0 chr12 92072195 92072248 -51714207 + AT_rich Low_complexity Low_complexity 1 53 0 252 0 0 0 chr12 92072701 92072729 -51713726 + (TA)n Simple_repeat Simple_repeat 2 29 0 5304 44 11 5 chr12 92072729 92073373 -51713082 - L1PA5 LINE L1 -10 6144 5494 1695 62 21 4 chr12 92073373 92073615 -51712840 + L1P LINE L1 5148 5393 -753 192 280 80 0 chr12 92073654 92073704 -51712751 + L2 LINE L2 3219 3272 0 1364 206 133 41 chr12 92074258 92074723 -51711732 - Charlie4a DNA MER1_type 0 508 1 1935 113 11 7 chr12 92075364 92075697 -51710758 + AluSx SINE Alu 1 334 0 325 287 56 9 chr12 92075701 92075809 -51710646 + MIR SINE MIR 75 187 -75 1745 189 0 16 chr12 92075868 92076174 -51710281 - AluJb SINE Alu 0 312 12 183 372 39 0 chr12 92076224 92076302 -51710153 - L2 LINE L2 0 3313 3233 1915 115 37 0 chr12 92076684 92076978 -51709477 + AluSc SINE Alu 1 304 0 27 92 0 0 chr12 92077049 92077125 -51709330 + AT_rich Low_complexity Low_complexity 1 76 0 2042 194 53 122 chr12 92077262 92078011 -51708444 - LTR8A LTR ERV1 0 727 30 1256 252 44 22 chr12 92078267 92078632 -51707823 - MLT1A2 LTR MaLR 0 374 2 2069 236 98 54 chr12 92078831 92078872 -51707583 - L1M4b LINE L1 -5283 1576 1538 1837 161 27 24 chr12 92078872 92079208 -51707247 + MER1B DNA MER1_type 1 337 0 2069 236 98 54 chr12 92079208 92079889 -51706566 - L1M4b LINE L1 -5321 1538 822 234 153 0 34 chr12 92080572 92080631 -51705824 + L1MC4 LINE L1 6647 6703 -1339 1055 150 0 12 chr12 92080635 92080887 -51705568 + (TA)n Simple_repeat Simple_repeat 1 250 0 218 261 22 0 chr12 92081198 92081244 -51705211 + MIR SINE MIR 78 124 -84 323 316 61 18 chr12 92082163 92082277 -51704178 - MER5A DNA MER1_type -28 161 43 23 0 0 0 chr12 92083204 92083227 -51703228 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 92083360 92083388 -51703067 + AT_rich Low_complexity Low_complexity 1 28 0 1598 117 4 0 chr12 92083484 92083740 -51702715 - L1MA4 LINE L1 -8 6292 6036 666 342 29 47 chr12 92083782 92084232 -51702223 - MARNA DNA Mariner -31 555 114 191 302 63 0 chr12 92084300 92084363 -51702092 + L2 LINE L2 3205 3271 -1 25 0 0 0 chr12 92084773 92084798 -51701657 + AT_rich Low_complexity Low_complexity 1 25 0 34 99 0 0 chr12 92085044 92085155 -51701300 + AT_rich Low_complexity Low_complexity 1 111 0 2535 95 3 36 chr12 92085673 92086061 -51700394 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr12 92086190 92086229 -51700226 + AT_rich Low_complexity Low_complexity 1 39 0 300 229 0 0 chr12 92086559 92086642 -51699813 + GA-rich Low_complexity Low_complexity 3 85 0 26 0 0 0 chr12 92087247 92087273 -51699182 + AT_rich Low_complexity Low_complexity 1 26 0 282 240 100 69 chr12 92087316 92087417 -51699038 + MIR SINE MIR 4 106 -102 647 313 116 50 chr12 92087426 92087890 -51698565 - L2 LINE L2 -2 3311 2817 358 293 0 98 chr12 92087876 92088040 -51698415 - L2 LINE L2 -634 2680 2533 * 6852 60 31 0 chr12 92088617 92089487 -51696968 - MER11D LTR ERVK 0 897 1 1212 291 61 16 chr12 92089515 92089958 -51696497 - L2 LINE L2 -777 2537 2075 1097 197 75 36 chr12 92089983 92090341 -51696114 - MLT1A2 LTR MaLR -1 395 1 450 258 124 65 chr12 92090343 92090618 -51695837 + MLT1D LTR MaLR 21 311 -194 266 324 131 21 chr12 92090651 92090796 -51695659 - MER5B DNA MER1_type -6 172 12 252 312 86 11 chr12 92090806 92090899 -51695556 + MIR SINE MIR 160 259 -3 * 261 286 41 31 chr12 92090891 92090989 -51695466 - MIR SINE MIR -103 159 61 22 70 0 0 chr12 92091048 92091091 -51695364 + AT_rich Low_complexity Low_complexity 1 43 0 186 152 30 0 chr12 92091307 92091340 -51695115 + MIR SINE MIR 54 87 -175 253 294 59 20 chr12 92091386 92091488 -51694967 - MIR SINE MIR -31 231 126 315 65 0 0 chr12 92092074 92092120 -51694335 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 7562 19 5 0 chr12 92092120 92093615 -51692840 - L1PA2 LINE L1 -11 6144 4647 6578 22 9 0 chr12 92093615 92094396 -51692059 + L1PA2 LINE L1 3871 4658 -1488 2142 118 47 47 chr12 92094656 92095020 -51691435 - THE1B LTR MaLR 0 364 1 2000 199 47 35 chr12 92096908 92097401 -51689054 - MLT1D LTR MaLR -2 503 5 252 100 0 0 chr12 92097479 92097519 -51688936 + (GGA)n Simple_repeat Simple_repeat 3 42 0 379 242 158 0 chr12 92097914 92098034 -51688421 - MIR SINE MIR -13 249 111 26 30 0 0 chr12 92099077 92099110 -51687345 + AT_rich Low_complexity Low_complexity 1 33 0 293 230 149 0 chr12 92099118 92099279 -51687176 - L1ME4a LINE L1 -175 5946 5762 350 361 87 5 chr12 92099662 92100030 -51686425 - L1MC4a LINE L1 -1903 5905 5508 16257 34 0 5 chr12 92100383 92102400 -51684055 - L1P LINE L1 -2280 3866 1860 7448 30 2 0 chr12 92102401 92103654 -51682801 + L1PA3 LINE L1 4921 6173 0 1572 187 14 17 chr12 92104933 92105222 -51681233 - AluJo SINE Alu -24 288 1 707 291 38 5 chr12 92106337 92106547 -51679908 - MIR SINE MIR -28 234 18 1825 176 18 9 chr12 92106836 92107176 -51679279 + MER61A LTR ERV1 1 343 0 414 314 81 17 chr12 92107295 92107467 -51678988 - MIR SINE MIR -46 216 34 208 319 104 32 chr12 92108781 92108952 -51677503 + MIR SINE MIR 30 216 -46 22 0 0 0 chr12 92112625 92112647 -51673808 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 92113484 92113513 -51672942 + AT_rich Low_complexity Low_complexity 1 29 0 3022 134 0 10 chr12 92113627 92114112 -51672343 + L1PA15 LINE L1 5350 5829 -336 392 308 14 7 chr12 92114112 92114258 -51672197 - ERVL LTR ERVL -11 5753 5607 2559 98 8 19 chr12 92114512 92114880 -51671575 - THE1B LTR MaLR 0 364 1 1229 306 82 39 chr12 92114902 92115645 -51670810 - ERVL LTR ERVL -3965 1799 1025 570 263 182 8 chr12 92115812 92116059 -51670396 - MLT1D LTR MaLR 0 505 216 539 300 81 49 chr12 92116338 92116708 -51669747 - MLT2E LTR ERVL -15 613 232 290 326 84 43 chr12 92119075 92119475 -51666980 - L2 LINE L2 0 3272 2829 268 286 49 119 chr12 92119489 92119674 -51666781 - L2 LINE L2 -1382 1932 1761 222 333 125 0 chr12 92119980 92120076 -51666379 + MIR3 SINE MIR 55 162 -46 226 315 22 11 chr12 92120219 92120308 -51666147 + L1M4 LINE L1 4501 4590 -1556 186 43 0 0 chr12 92120826 92120849 -51665606 + (T)n Simple_repeat Simple_repeat 1 23 0 6190 93 50 8 chr12 92123291 92124297 -51662158 - L1PA12 LINE L1 -15 6153 5135 223 229 14 29 chr12 92124521 92124591 -51661864 + (CATA)n Simple_repeat Simple_repeat 4 72 0 22 56 0 0 chr12 92124937 92124973 -51661482 + AT_rich Low_complexity Low_complexity 1 36 0 357 281 34 0 chr12 92125345 92125434 -51661021 + MLT1J LTR MaLR 38 129 -382 325 330 92 51 chr12 92125651 92125924 -51660531 - L1ME LINE L1 -519 5602 5319 308 231 39 13 chr12 92126321 92126399 -51660056 + MER110A LTR ERV1 91 170 -298 495 249 105 86 chr12 92126505 92126818 -51659637 + MER110 LTR ERV1 166 484 -7 26 50 0 0 chr12 92126930 92126970 -51659485 + AT_rich Low_complexity Low_complexity 1 40 0 189 100 60 0 chr12 92126974 92127024 -51659431 + (TA)n Simple_repeat Simple_repeat 1 53 0 1094 239 24 48 chr12 92127030 92127188 -51659267 - MLT2B1 LTR ERVL -37 377 217 1024 84 0 0 chr12 92127188 92127330 -51659125 - L1PA8 LINE L1 -1 6171 6030 1094 239 24 48 chr12 92127330 92127545 -51658910 - MLT2B1 LTR ERVL -197 217 4 1229 169 27 0 chr12 92127545 92127764 -51658691 - ERVL-B1 LTR ERVL -5 5759 5535 20623 204 65 29 chr12 92127771 92132301 -51654154 - ERVL-B1 LTR ERVL -1067 4697 2 252 191 0 90 chr12 92132302 92132391 -51654064 - ERVL-B1 LTR ERVL 0 520 440 1051 210 22 2 chr12 92132416 92132703 -51653752 - MER2 DNA MER2_type -1 344 2 978 260 64 60 chr12 92132705 92132716 -51653739 - MLT2B1 LTR ERVL -40 480 471 324 111 0 0 chr12 92132716 92132770 -51653685 + (CA)n Simple_repeat Simple_repeat 1 54 0 * 357 43 0 0 chr12 92132769 92132816 -51653639 + (GA)n Simple_repeat Simple_repeat 2 48 0 978 260 64 60 chr12 92132770 92133079 -51653376 - MLT2B1 LTR ERVL -49 471 108 2019 129 7 0 chr12 92133079 92133373 -51653082 + AluSx SINE Alu 1 296 -16 978 260 64 60 chr12 92133373 92133482 -51652973 - MLT2B1 LTR ERVL -412 108 1 24 85 0 0 chr12 92134311 92134370 -51652085 + AT_rich Low_complexity Low_complexity 1 59 0 1179 141 19 24 chr12 92134375 92134588 -51651867 - L1MA4 LINE L1 -22 6278 6067 1056 197 11 0 chr12 92134600 92134788 -51651667 + AluJb SINE Alu 113 302 -10 1965 158 6 20 chr12 92135105 92135447 -51651008 + MER1B DNA MER1_type 1 337 0 1819 126 3 55 chr12 92135958 92136268 -51650187 - AluSg SINE Alu -16 294 1 4417 161 72 12 chr12 92136338 92138064 -51648391 - L1MA7 LINE L1 -7 6284 4398 21 0 0 0 chr12 92138576 92138597 -51647858 + AT_rich Low_complexity Low_complexity 1 21 0 9451 27 1 0 chr12 92139424 92141319 -51645136 - L1PA3 LINE L1 -3 6152 4255 18554 34 0 1 chr12 92141321 92143597 -51642858 + L1PA3 LINE L1 1985 4259 -1887 22 70 0 0 chr12 92143873 92143916 -51642539 + AT_rich Low_complexity Low_complexity 1 43 0 542 307 111 9 chr12 92144516 92144741 -51641714 - ERVL-C1 LTR ERVL -5515 249 2 1346 226 7 71 chr12 92144742 92145166 -51641289 - MLT2C1 LTR ERVL 0 397 1 382 190 39 127 chr12 92145173 92145378 -51641077 + L1MEc LINE L1 2173 2359 -4037 1446 191 26 11 chr12 92145381 92145653 -51640802 - AluJo SINE Alu -15 297 22 758 261 112 14 chr12 92145679 92146097 -51640358 + L1MEc LINE L1 2297 2755 -3460 531 260 76 36 chr12 92146108 92146358 -51640097 + L1MEc LINE L1 2807 3066 -3149 1285 294 88 30 chr12 92146372 92147346 -51639109 + L1MEc LINE L1 3104 4134 -2081 2779 10 0 0 chr12 92148349 92148658 -51637797 + AluYa5 SINE Alu 1 309 -2 514 255 155 0 chr12 92149258 92149419 -51637036 - MER5A DNA MER1_type -3 186 1 343 184 13 13 chr12 92149963 92150039 -51636416 - LTR41 LTR ERVL -7 766 691 2434 258 46 24 chr12 92150865 92151930 -51634525 - L1MDa LINE L1 -2955 3585 2489 29 70 0 0 chr12 92151938 92151995 -51634460 + AT_rich Low_complexity Low_complexity 1 57 0 245 281 0 0 chr12 92152416 92152473 -51633982 - L1MDa LINE L1 -5963 758 702 189 0 0 0 chr12 92152521 92152542 -51633913 + (A)n Simple_repeat Simple_repeat 1 21 0 593 308 63 26 chr12 92152620 92152922 -51633533 - L2 LINE L2 -668 2646 2334 291 324 198 0 chr12 92152965 92153147 -51633308 - L2 LINE L2 -1711 1603 1386 22 0 0 0 chr12 92154011 92154033 -51632422 + AT_rich Low_complexity Low_complexity 1 22 0 425 130 43 98 chr12 92154487 92154579 -51631876 + MLT1A1 LTR MaLR 1 87 -278 1552 193 111 49 chr12 92156039 92156470 -51629985 - MER31B LTR ERV1 -8 458 1 913 301 57 64 chr12 92156487 92156959 -51629496 - MLT1J LTR MaLR -42 469 1 498 274 96 96 chr12 92157367 92157430 -51629025 - MLT1H LTR MaLR -2 553 491 437 144 11 0 chr12 92157430 92157520 -51628935 + L1MA4 LINE L1 6204 6294 -6 498 274 96 96 chr12 92157520 92157978 -51628477 - MLT1H LTR MaLR -63 492 32 367 261 72 19 chr12 92158523 92158690 -51627765 - MLT1H LTR MaLR -376 173 3 349 325 33 26 chr12 92159198 92159349 -51627106 + L3 LINE CR1 966 1117 -460 203 358 95 0 chr12 92159474 92159622 -51626833 + L3 LINE CR1 1294 1455 -122 231 203 38 0 chr12 92159654 92159733 -51626722 + (TA)n Simple_repeat Simple_repeat 2 83 0 410 338 104 5 chr12 92161245 92161467 -51624988 + MIR SINE MIR 7 250 -12 2370 119 19 16 chr12 92162349 92162719 -51623736 + THE1C LTR MaLR 1 371 -4 195 378 71 34 chr12 92162850 92163173 -51623282 + L2 LINE L2 2422 2756 -558 283 297 27 81 chr12 92164013 92164198 -51622257 + MLT1K LTR MaLR 252 426 -162 410 284 130 0 chr12 92165269 92165431 -51621024 + MIR SINE MIR 19 201 -61 367 79 95 16 chr12 92165788 92165851 -51620604 - MER51C-int LTR ERV1 -7746 70 3 462 210 64 178 chr12 92165851 92166194 -51620261 - MER51C LTR ERV1 0 634 331 255 284 0 11 chr12 92166457 92166552 -51619903 + L1MC4 LINE L1 6610 6703 -1339 211 279 12 0 chr12 92166554 92166640 -51619815 + (TA)n Simple_repeat Simple_repeat 1 87 0 846 127 30 0 chr12 92166784 92166918 -51619537 - L1PA16 LINE L1 -9 6157 6020 202 357 111 24 chr12 92167869 92167995 -51618460 - L2 LINE L2 0 3272 3136 214 319 0 43 chr12 92168068 92168162 -51618293 - L2 LINE L2 -173 3099 3010 205 152 0 0 chr12 92168775 92168808 -51617647 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 50 0 0 chr12 92169299 92169339 -51617116 + AT_rich Low_complexity Low_complexity 1 40 0 190 318 206 32 chr12 92169343 92169532 -51616923 - L2 LINE L2 -24 3289 3068 1417 205 20 8 chr12 92169547 92169922 -51616533 - LTR43 LTR ERV1 -23 579 169 323 73 0 0 chr12 92169924 92169965 -51616490 + MSTB LTR MaLR 386 426 0 465 161 25 0 chr12 92169965 92170046 -51616409 + MSTB-int LTR MaLR 1 83 -1568 493 43 0 0 chr12 92170046 92170116 -51616339 + AluSp/q SINE Alu 240 309 -4 1265 147 96 9 chr12 92170119 92170337 -51616118 + MSTA LTR MaLR 192 428 0 1272 279 89 28 chr12 92172110 92172616 -51613839 + MLT1F LTR MaLR 1 537 -5 268 277 85 0 chr12 92172823 92172917 -51613538 + MIR SINE MIR 71 172 -90 2444 200 25 5 chr12 92172922 92173437 -51613018 - Tigger7 DNA MER2_type -1 2486 4 810 231 84 7 chr12 92174732 92175005 -51611450 + MER33 DNA MER1_type 6 299 -25 28 71 0 0 chr12 92176515 92176571 -51609884 + AT_rich Low_complexity Low_complexity 1 56 0 3981 35 2 0 chr12 92176612 92177114 -51609341 + L1P LINE L1 4813 5318 -836 22 35 0 0 chr12 92177131 92177160 -51609295 + AT_rich Low_complexity Low_complexity 1 29 0 335 353 20 27 chr12 92177331 92177481 -51608974 - MIR SINE MIR -112 150 2 535 212 127 29 chr12 92177869 92178128 -51608327 + MLT1E1 LTR MaLR 1 259 -367 759 308 52 56 chr12 92178218 92179075 -51607380 - MER66-int LTR ERV1 -1313 4071 2897 266 323 39 23 chr12 92179409 92179539 -51606916 - MER66-int LTR ERV1 -4958 2798 2667 602 264 71 59 chr12 92179808 92180130 -51606325 - MER66-int LTR ERV1 -4066 2610 2082 669 212 24 0 chr12 92180975 92181140 -51605315 + L1MEc LINE L1 2280 2448 -3948 10632 139 16 30 chr12 92181140 92182959 -51603496 - Tigger1 DNA MER2_type -2 2416 623 21 0 0 0 chr12 92182959 92182980 -51603475 + AT_rich Low_complexity Low_complexity 1 21 0 747 144 0 0 chr12 92182997 92183122 -51603333 + L1P LINE L1 3821 3945 -2201 1438 216 100 13 chr12 92183122 92183511 -51602944 - LTR22 LTR ERVK 0 509 87 8255 87 18 15 chr12 92183577 92184787 -51601668 + L1P LINE L1 4164 5377 -769 257 316 92 10 chr12 92185105 92185203 -51601252 - MIR3 SINE MIR -93 115 10 21 0 0 0 chr12 92185250 92185271 -51601184 + AT_rich Low_complexity Low_complexity 1 21 0 15543 25 1 0 chr12 92186383 92188589 -51597866 - L1P2 LINE L1 -394 5761 3555 1211 228 48 16 chr12 92188756 92189133 -51597322 - L1MB7 LINE L1 -193 5991 5603 2242 36 0 0 chr12 92191028 92191308 -51595147 - L1P LINE L1 -3180 2966 2687 6902 10 0 0 chr12 92191308 92192081 -51594374 + L1PA3 LINE L1 5374 6152 -3 2013 75 6 63 chr12 92192098 92192159 -51594296 + L1PA6 LINE L1 5770 5833 -321 2367 83 0 10 chr12 92192159 92192471 -51593984 + AluY SINE Alu 1 309 -2 2013 75 6 63 chr12 92192471 92192728 -51593727 + L1PA6 LINE L1 5833 6070 -84 6714 67 8 3 chr12 92193127 92194776 -51591679 - L1PA7 LINE L1 -1 6153 4517 30 83 0 0 chr12 92195179 92195251 -51591204 + GC_rich Low_complexity Low_complexity 1 72 0 215 200 0 0 chr12 92195744 92195784 -51590671 - L2 LINE L2 -18 3295 3256 1931 220 58 60 chr12 92195799 92196354 -51590101 - MLT2B3 LTR ERVL 0 554 1 283 248 68 60 chr12 92196375 92196508 -51589947 - MIR SINE MIR -58 204 71 8421 79 1 4 chr12 92196651 92197812 -51588643 - L1P LINE L1 -1816 4330 3174 213 259 0 0 chr12 92197858 92197916 -51588539 + C-rich Low_complexity Low_complexity 1 58 0 255 308 0 41 chr12 92197941 92198113 -51588342 + CT-rich Low_complexity Low_complexity 3 167 0 * 534 286 0 0 chr12 92197988 92198159 -51588296 + C-rich Low_complexity Low_complexity 1 171 0 5145 115 6 11 chr12 92198459 92199300 -51587155 - L1P LINE L1 -798 5348 4512 530 337 83 11 chr12 92200316 92200716 -51585739 - L2 LINE L2 -197 3116 2684 2436 97 0 3 chr12 92201342 92201652 -51584803 - AluSq SINE Alu -4 309 1 255 330 62 10 chr12 92201687 92201784 -51584671 + L2 LINE L2 2954 3055 -217 875 278 57 39 chr12 92202155 92203254 -51583201 + L1MCc LINE L1 1129 2445 -4677 1813 164 0 11 chr12 92203331 92203617 -51582838 + AluSx SINE Alu 1 283 -29 28 29 0 0 chr12 92203624 92203659 -51582796 + AT_rich Low_complexity Low_complexity 1 35 0 310 216 21 21 chr12 92203828 92203925 -51582530 + L1MCc LINE L1 2741 2837 -4285 22 56 0 0 chr12 92203967 92204003 -51582452 + AT_rich Low_complexity Low_complexity 1 36 0 2372 62 0 19 chr12 92204419 92204727 -51581728 - AluY SINE Alu -9 302 1 2012 81 28 3 chr12 92204740 92205024 -51581431 + L1PA13 LINE L1 5867 6157 -6 1972 154 31 40 chr12 92206809 92207257 -51579198 + L1MA7 LINE L1 5846 6289 -2 1481 209 3 13 chr12 92207386 92207693 -51578762 - AluJo SINE Alu -8 304 1 356 354 56 0 chr12 92207716 92207860 -51578595 - MIR SINE MIR -48 214 63 612 245 153 51 chr12 92209128 92209422 -51577033 + MER5C DNA MER1_type 1 324 0 320 254 87 72 chr12 92209457 92209595 -51576860 + MIR SINE MIR 53 192 -70 * 441 239 22 0 chr12 92209579 92209671 -51576784 + MER5A DNA MER1_type 16 109 -80 317 274 90 94 chr12 92211785 92211997 -51574458 + MIR SINE MIR 46 256 -6 252 340 80 27 chr12 92212122 92212272 -51574183 - MIR SINE MIR -57 205 48 630 169 25 0 chr12 92212639 92212757 -51573698 + L1MA7 LINE L1 6165 6285 -6 183 303 91 0 chr12 92213449 92213515 -51572940 + L2 LINE L2 3201 3272 0 222 443 0 16 chr12 92214617 92214739 -51571716 - L2 LINE L2 -212 3060 2941 499 243 90 32 chr12 92214835 92215024 -51571431 - LTR33A LTR ERVL -5 518 319 5898 182 48 58 chr12 92215114 92216523 -51569932 + L1MC3 LINE L1 6367 7760 -25 265 206 0 0 chr12 92216538 92216606 -51569849 + L1MB4 LINE L1 6112 6179 -1 463 195 0 0 chr12 92216621 92216708 -51569747 + L1MC1 LINE L1 6214 6300 -33 358 315 144 11 chr12 92216824 92217005 -51569450 - LTR50 LTR ERVL -590 205 1 253 286 143 0 chr12 92217019 92217096 -51569359 - MLT1K LTR MaLR -128 460 373 220 348 84 51 chr12 92217733 92217911 -51568544 - MER5A DNA MER1_type 0 189 6 207 304 80 27 chr12 92217915 92218027 -51568428 - L2 LINE L2 -846 2468 2351 412 283 0 0 chr12 92218034 92218126 -51568329 - MER81 DNA DNA -22 92 1 224 392 47 27 chr12 92218163 92218311 -51568144 - L2 LINE L2 -981 2333 2183 210 237 0 0 chr12 92218347 92218385 -51568070 + polypurine Low_complexity Low_complexity 2 39 0 429 342 71 47 chr12 92218731 92219053 -51567402 + MER102b DNA MER1_type 9 338 -3 225 330 40 0 chr12 92219183 92219283 -51567172 - L2 LINE L2 -1691 1623 1520 1930 215 13 58 chr12 92221174 92221696 -51564759 - MLT1D LTR MaLR -6 499 1 188 435 113 0 chr12 92221828 92221943 -51564512 + MIR SINE MIR 20 147 -61 217 319 104 18 chr12 92222151 92222314 -51564141 + MIR SINE MIR 84 260 -2 826 273 17 62 chr12 92222535 92222890 -51563565 - L1MC4a LINE L1 -868 6940 6602 443 355 61 57 chr12 92223126 92223313 -51563142 - HAL1b LINE L1 -674 674 489 8773 83 9 0 chr12 92223313 92225292 -51561163 + L1PA7 LINE L1 4165 6153 -1 443 355 61 57 chr12 92225292 92225772 -51560683 - HAL1b LINE L1 -859 489 4 269 51 26 0 chr12 92226060 92226099 -51560356 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 2095 193 8 10 chr12 92226813 92227206 -51559249 - MSTD LTR MaLR -4 392 1 419 276 22 22 chr12 92229673 92229807 -51556648 + MER103 DNA DNA 24 157 -9 1941 122 83 11 chr12 92230106 92230467 -51555988 + L1MA8 LINE L1 5901 6287 -4 3856 70 2 2 chr12 92230538 92231041 -51555414 + L1PA12 LINE L1 5659 6161 -7 460 339 73 5 chr12 92231747 92231939 -51554516 - MIR SINE MIR -44 218 14 3094 274 43 4 chr12 92233973 92234778 -51551677 - ERVL LTR ERVL -2756 3008 2172 313 291 53 40 chr12 92234769 92234996 -51551459 - ERVL LTR ERVL -4052 1602 1373 * 601 343 91 4 chr12 92235000 92235254 -51551201 - MLT2E LTR ERVL -103 525 250 1971 108 24 3 chr12 92235354 92235641 -51550814 - AluY SINE Alu -18 293 1 919 57 8 0 chr12 92236083 92236206 -51550249 + L1P3 LINE L1 5385 5508 -646 230 232 22 39 chr12 92237251 92237432 -51549023 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 401 313 70 20 chr12 92237680 92237881 -51548574 + MIR SINE MIR 49 259 -3 368 224 80 32 chr12 92238591 92238716 -51547739 - MIR SINE MIR -15 247 117 298 182 70 0 chr12 92238939 92239082 -51547373 + (CA)n Simple_repeat Simple_repeat 2 154 0 309 209 55 6 chr12 92239112 92239275 -51547180 + (CACAA)n Simple_repeat Simple_repeat 2 172 0 1455 65 5 222 chr12 92239390 92239760 -51546695 - L1P LINE L1 -743 5403 5114 33 0 0 0 chr12 92240971 92241004 -51545451 + AT_rich Low_complexity Low_complexity 1 33 0 6035 119 61 17 chr12 92242336 92243362 -51543093 + L1P LINE L1 3374 4445 -1701 3484 149 13 0 chr12 92243462 92243997 -51542458 - LTR57-int LTR ERVL -217 5126 4585 4269 155 46 4 chr12 92243997 92244765 -51541690 - L1MC1 LINE L1 -88 6245 5446 329 237 0 0 chr12 92245358 92245417 -51541038 - Tigger3(Golem) DNA MER2_type 0 3029 2971 580 285 35 0 chr12 92246589 92246733 -51539722 - L2 LINE L2 0 3313 3165 6288 57 7 81 chr12 92247967 92249622 -51536833 + L1PA7 LINE L1 4582 6147 -7 666 211 36 18 chr12 92249630 92249796 -51536659 + MLT1C LTR MaLR 158 326 -141 670 309 106 26 chr12 92249941 92250403 -51536052 - L2 LINE L2 -1 3312 2814 34 24 0 0 chr12 92250431 92250472 -51535983 + AT_rich Low_complexity Low_complexity 1 41 0 516 212 256 0 chr12 92250472 92250609 -51535846 - L2 LINE L2 -488 2826 2655 317 151 5 88 chr12 92251020 92251212 -51535243 + (CAA)n Simple_repeat Simple_repeat 3 178 0 233 204 72 0 chr12 92251218 92251385 -51535070 + (CA)n Simple_repeat Simple_repeat 2 180 0 2147 57 1 14 chr12 92251997 92252786 -51533669 + L1PA5 LINE L1 5221 6151 -3 700 193 22 7 chr12 92252803 92252938 -51533517 - MLT1A1 LTR MaLR -224 141 5 281 222 137 26 chr12 92252993 92253110 -51533345 + L1ME1 LINE L1 5808 5937 -229 338 204 32 21 chr12 92253463 92253556 -51532899 + MLT1C LTR MaLR 297 390 0 1550 175 45 4 chr12 92253597 92253866 -51532589 + AluJb SINE Alu 12 291 -21 2635 91 6 0 chr12 92254593 92254946 -51531509 - THE1A LTR MaLR 0 355 1 345 321 48 21 chr12 92254957 92255144 -51531311 + MIR SINE MIR 70 261 -1 2314 77 3 7 chr12 92256644 92256941 -51529514 - AluSg SINE Alu -14 296 1 370 259 184 25 chr12 92257493 92257651 -51528804 - MIR SINE MIR -31 231 49 203 193 96 48 chr12 92258511 92258594 -51527861 - MIR SINE MIR -106 102 16 419 333 48 0 chr12 92259055 92259220 -51527235 - MIR3 SINE MIR -6 202 30 222 37 0 0 chr12 92259989 92260016 -51526439 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 396 279 86 50 chr12 92260331 92260471 -51525984 - MIR SINE MIR -105 157 13 22 0 0 0 chr12 92260643 92260665 -51525790 + AT_rich Low_complexity Low_complexity 1 22 0 591 211 16 0 chr12 92260888 92261011 -51525444 - FLAM_A SINE Alu -1 141 17 16984 130 12 27 chr12 92261341 92264286 -51522169 + L1PA4 LINE L1 738 3639 -2507 10354 93 12 14 chr12 92264286 92265737 -51520718 + L1PA4 LINE L1 3880 5332 -823 2274 73 17 10 chr12 92265737 92266039 -51520416 + AluY SINE Alu 1 304 -7 10354 93 12 14 chr12 92266039 92266861 -51519594 + L1PA4 LINE L1 5332 6154 -1 2290 87 0 40 chr12 92267020 92267341 -51519114 - AluSc SINE Alu -1 308 1 290 346 28 0 chr12 92269414 92269521 -51516934 + L2 LINE L2 3157 3266 -6 262 357 62 73 chr12 92269902 92270174 -51516281 + L2 LINE L2 3004 3272 0 2915 20 6 0 chr12 92271018 92271363 -51515092 + L1HS LINE L1 5807 6153 -2 275 0 29 0 chr12 92271363 92271398 -51515057 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1129 186 59 30 chr12 92271399 92271636 -51514819 + MSTA LTR MaLR 185 428 0 2258 68 4 0 chr12 92274773 92275084 -51511371 + AluY SINE Alu 1 312 0 22 0 0 0 chr12 92275393 92275415 -51511040 + AT_rich Low_complexity Low_complexity 1 22 0 264 111 0 0 chr12 92276443 92276488 -51509967 + (GA)n Simple_repeat Simple_repeat 1 45 0 409 293 29 7 chr12 92276548 92276565 -51509890 + MIR SINE MIR 120 135 -127 322 25 0 0 chr12 92276565 92276605 -51509850 + L1PA6 LINE L1 6107 6146 -8 409 293 29 7 chr12 92276605 92276727 -51509728 + MIR SINE MIR 135 262 0 1350 208 69 23 chr12 92277058 92277462 -51508993 + MLT2B1 LTR ERVL 1 476 -44 287 149 0 0 chr12 92277515 92277562 -51508893 + MLT2B1 LTR ERVL 474 520 0 221 232 30 10 chr12 92280326 92280425 -51506030 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 702 165 9 0 chr12 92280425 92280540 -51505915 - FLAM_C SINE Alu -21 122 7 529 326 40 6 chr12 92280662 92280886 -51505569 + MIR SINE MIR 20 256 -6 2248 128 5 72 chr12 92282155 92282555 -51503900 - LTR57 LTR ERVL -38 373 1 1653 137 0 0 chr12 92282555 92282803 -51503652 - LTR57-int LTR ERVL 0 5343 5096 952 235 0 4 chr12 92285108 92285338 -51501117 - L1M4 LINE L1 -1343 4803 4575 4083 248 34 12 chr12 92285348 92286687 -51499768 - L1M4 LINE L1 -1889 4257 2889 454 204 112 20 chr12 92286737 92286889 -51499566 + MER7A DNA MER2_type 20 183 -163 390 46 3 0 chr12 92287275 92287371 -51499084 - MADE1 DNA Mariner -13 67 1 534 278 35 22 chr12 92287820 92288050 -51498405 + L1ME LINE L1 5544 5776 -345 2453 74 3 3 chr12 92288215 92288526 -51497929 + AluY SINE Alu 1 311 0 3610 102 63 2 chr12 92289259 92289817 -51496638 - L1PB2 LINE L1 -219 5932 5341 251 233 0 14 chr12 92289830 92289903 -51496552 + LTR38B LTR ERV1 42 113 -497 * 1612 202 74 62 chr12 92289871 92290399 -51496056 + LTR38B LTR ERV1 22 591 -19 1875 170 36 85 chr12 92290756 92291204 -51495251 + MSTB LTR MaLR 1 426 0 8595 184 24 7 chr12 92291204 92292828 -51493627 + MSTB-int LTR MaLR 1 1651 0 2246 171 28 10 chr12 92292849 92293246 -51493209 + MSTB LTR MaLR 23 426 0 403 288 16 16 chr12 92293439 92293564 -51492891 - MLT1K LTR MaLR -263 325 201 2065 106 7 3 chr12 92293753 92294035 -51492420 + AluSp SINE Alu 1 283 -30 526 330 16 16 chr12 92294071 92294259 -51492196 + MIR SINE MIR 45 232 -30 248 285 154 36 chr12 92294586 92294807 -51491648 - L2 LINE L2 -353 2961 2715 267 187 33 77 chr12 92295836 92295927 -51490528 + MER113 DNA MER1_type? 4 90 -431 599 139 10 0 chr12 92295975 92296076 -51490379 + L1MA9 LINE L1 6004 6105 -207 1218 215 18 4 chr12 92296077 92296305 -51490150 - MER8 DNA MER2_type 0 239 9 767 166 43 0 chr12 92296305 92296468 -51489987 + L1MA7 LINE L1 6110 6279 -12 2108 101 30 7 chr12 92296530 92296653 -51489802 + AluSx SINE Alu 1 120 -192 180 0 0 0 chr12 92296653 92296673 -51489782 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2108 101 30 7 chr12 92296673 92296846 -51489609 + AluSx SINE Alu 120 304 -8 779 116 45 0 chr12 92297021 92297133 -51489322 - U1 snRNA snRNA -1 164 48 666 228 99 43 chr12 92297384 92297616 -51488839 + MIR SINE MIR 18 262 0 26 30 0 0 chr12 92300909 92300942 -51485513 + AT_rich Low_complexity Low_complexity 1 33 0 280 302 87 60 chr12 92302134 92302341 -51484114 + MIR SINE MIR 40 251 -11 222 37 0 0 chr12 92302740 92302767 -51483688 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 419 333 48 0 chr12 92303536 92303701 -51482754 + MIR3 SINE MIR 30 202 -6 269 241 60 12 chr12 92304160 92304243 -51482212 + MIR SINE MIR 16 102 -106 216 97 0 0 chr12 92304500 92304531 -51481924 + (T)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr12 92304730 92304751 -51481704 + AT_rich Low_complexity Low_complexity 1 21 0 314 75 60 0 chr12 92306198 92306265 -51480190 + (TA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr12 92306475 92306497 -51479958 + AT_rich Low_complexity Low_complexity 1 22 0 211 288 27 0 chr12 92306509 92306582 -51479873 - MIR SINE MIR 0 262 188 243 189 0 57 chr12 92306853 92306906 -51479549 - MIR SINE MIR -97 165 116 277 298 133 7 chr12 92307424 92307575 -51478880 + MIR SINE MIR 63 232 -30 324 329 14 89 chr12 92307934 92308214 -51478241 - MIR SINE MIR -2 260 2 182 62 31 0 chr12 92308266 92308298 -51478157 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr12 92308914 92308937 -51477518 + AT_rich Low_complexity Low_complexity 1 23 0 406 297 21 7 chr12 92309154 92309299 -51477156 + MIR SINE MIR 106 252 -10 284 361 23 38 chr12 92309796 92309929 -51476526 + MIR SINE MIR 20 150 -58 234 328 0 0 chr12 92309942 92310009 -51476446 + T-rich Low_complexity Low_complexity 3 69 0 245 363 70 41 chr12 92310187 92310358 -51476097 + MIR SINE MIR 23 198 -64 839 164 0 0 chr12 92310360 92310482 -51475973 + FLAM_C SINE Alu 3 124 -19 410 0 0 20 chr12 92310486 92310537 -51475918 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 519 251 70 29 chr12 92310929 92311100 -51475355 + MIR SINE MIR 79 256 -6 312 290 174 13 chr12 92311994 92312149 -51474306 + L2 LINE L2 2677 2856 -458 27 0 0 0 chr12 92312723 92312750 -51473705 + AT_rich Low_complexity Low_complexity 1 27 0 354 253 37 49 chr12 92312922 92313084 -51473371 - MIR SINE MIR -24 238 79 2232 93 0 0 chr12 92313168 92313473 -51472982 - AluSc SINE Alu 0 305 1 2316 95 0 3 chr12 92314834 92315139 -51471316 - AluSq SINE Alu -9 304 1 247 299 60 45 chr12 92316273 92316407 -51470048 - L2 LINE L2 0 3272 3137 741 309 115 37 chr12 92316636 92316844 -51469611 - L2 LINE L2 0 3313 3123 189 0 0 0 chr12 92316844 92316865 -51469590 + (ATGTG)n Simple_repeat Simple_repeat 4 24 0 741 309 115 37 chr12 92316865 92317466 -51468989 - L2 LINE L2 -190 3123 2433 734 272 55 21 chr12 92317530 92317765 -51468690 - MIR SINE MIR -4 258 16 2494 77 0 0 chr12 92317820 92318130 -51468325 - AluSg SINE Alu 0 310 1 370 259 184 25 chr12 92318633 92318791 -51467664 - MIR SINE MIR -31 231 49 21 0 0 0 chr12 92319083 92319104 -51467351 + AT_rich Low_complexity Low_complexity 1 21 0 1097 81 0 0 chr12 92319740 92319889 -51466566 - L1PB1 LINE L1 -1 6150 6002 307 309 66 37 chr12 92320022 92320158 -51466297 - MER5A DNA MER1_type -7 182 43 216 0 0 0 chr12 92320548 92320572 -51465883 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 615 329 68 34 chr12 92322131 92322541 -51463914 + L2 LINE L2 2357 2780 -534 426 287 94 35 chr12 92323361 92323563 -51462892 + MIR SINE MIR 46 259 -3 267 339 0 74 chr12 92325868 92325989 -51460466 - MIR SINE MIR -70 192 81 1681 200 73 59 chr12 92326277 92326328 -51460127 - MLT1D LTR MaLR 0 505 456 2039 118 6 48 chr12 92326328 92326641 -51459814 + AluSx SINE Alu 1 300 -12 1681 200 73 59 chr12 92326641 92327083 -51459372 - MLT1D LTR MaLR -49 456 5 202 245 0 0 chr12 92328176 92328225 -51458230 + MIR SINE MIR 98 146 -62 3780 274 92 39 chr12 92328330 92329888 -51456567 + L2 LINE L2 1466 3094 -219 2235 88 3 3 chr12 92330350 92330644 -51455811 - AluSg SINE Alu -16 294 1 655 228 136 44 chr12 92330780 92330986 -51455469 + L2 LINE L2 3087 3311 -2 204 356 0 0 chr12 92332018 92332077 -51454378 + L2 LINE L2 3247 3305 -8 305 333 56 49 chr12 92332112 92332274 -51454181 - L2 LINE L2 -4 3268 3106 546 284 74 21 chr12 92334426 92334616 -51451839 + MIR SINE MIR 47 246 -16 263 300 20 107 chr12 92335206 92335258 -51451197 - MER5A DNA MER1_type -13 176 121 3072 87 5 9 chr12 92335258 92335705 -51450750 + L1PA6 LINE L1 5710 6154 0 263 300 20 107 chr12 92335705 92335802 -51450653 - MER5A DNA MER1_type -68 121 40 183 360 79 0 chr12 92335977 92336066 -51450389 + MER5A DNA MER1_type 26 121 -68 246 62 0 0 chr12 92336155 92336187 -51450268 + (TG)n Simple_repeat Simple_repeat 2 33 0 523 276 40 20 chr12 92336311 92336463 -51449992 + MIR3 SINE MIR 10 164 -44 800 167 0 8 chr12 92338167 92338299 -51448156 - FLAM_C SINE Alu -12 131 1 1545 186 17 14 chr12 92338887 92339177 -51447278 - AluJo SINE Alu -21 291 1 257 306 51 51 chr12 92340355 92340453 -51446002 - MIR3 SINE MIR -20 188 91 601 296 25 10 chr12 92340724 92340920 -51445535 - MIR SINE MIR -48 214 16 454 158 0 37 chr12 92341077 92341159 -51445296 - Tigger4(Zombi) DNA MER2_type -2 2729 2651 2340 180 24 19 chr12 92341161 92341181 -51445274 - L1P4 LINE L1 -676 5490 5472 3812 134 59 6 chr12 92341181 92341829 -51444626 - L1PA16 LINE L1 -9 6157 5476 4884 52 5 0 chr12 92341829 92342438 -51444017 - L1PA7 LINE L1 -3 6151 5536 2340 180 24 19 chr12 92342438 92343082 -51443373 - L1P4 LINE L1 -693 5473 4826 363 290 36 22 chr12 92343286 92343424 -51443031 + MIR SINE MIR 46 185 -77 25 31 0 0 chr12 92343738 92343770 -51442685 + AT_rich Low_complexity Low_complexity 1 32 0 1845 149 31 7 chr12 92344154 92344442 -51442013 + AluSx SINE Alu 5 299 -13 567 288 71 20 chr12 92344598 92344796 -51441659 + MIR SINE MIR 47 254 -8 230 281 206 14 chr12 92345394 92345540 -51440915 - MIR SINE MIR -3 259 86 546 284 74 21 chr12 92345829 92346019 -51440436 + MIR SINE MIR 47 246 -16 229 287 210 7 chr12 92346642 92346785 -51439670 - MIR SINE MIR -3 259 88 497 219 258 13 chr12 92347036 92347187 -51439268 - MER5A DNA MER1_type -1 188 1 562 144 6 198 chr12 92347845 92348012 -51438443 + MER2 DNA MER2_type 2 136 -209 23 54 0 0 chr12 92348094 92348131 -51438324 + AT_rich Low_complexity Low_complexity 1 37 0 255 186 0 0 chr12 92348213 92348256 -51438199 + MER2 DNA MER2_type 278 320 -25 358 306 23 42 chr12 92349608 92349798 -51436657 - MIR SINE MIR -50 212 30 189 0 0 0 chr12 92350486 92350507 -51435948 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr12 92350892 92350919 -51435536 + AT_rich Low_complexity Low_complexity 1 27 0 480 268 52 5 chr12 92350938 92351152 -51435303 - L1MA4 LINE L1 -25 6280 6054 841 175 18 107 chr12 92351195 92351475 -51434980 - L1MC4 LINE L1 0 8042 7788 221 0 0 33 chr12 92351542 92351572 -51434883 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 980 192 156 5 chr12 92351637 92351861 -51434594 + MLT1D LTR MaLR 13 270 -235 189 0 0 0 chr12 92352612 92352633 -51433822 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr12 92353018 92353045 -51433410 + AT_rich Low_complexity Low_complexity 1 27 0 1097 170 39 0 chr12 92353049 92353278 -51433177 - L1MA4 LINE L1 -9 6291 6054 860 175 18 107 chr12 92353321 92353601 -51432854 - L1MC4 LINE L1 0 8042 7788 221 0 0 33 chr12 92353668 92353698 -51432757 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2288 200 76 7 chr12 92353763 92354224 -51432231 + MLT1D LTR MaLR 13 505 0 906 251 117 26 chr12 92354224 92354642 -51431813 - L1MC4 LINE L1 -408 7634 7179 2439 86 0 0 chr12 92355024 92355328 -51431127 + AluY SINE Alu 1 304 -7 339 336 82 25 chr12 92355591 92355713 -51430742 + L2 LINE L2 3143 3271 -1 1316 204 45 26 chr12 92357529 92357881 -51428574 - Charlie5 DNA MER1_type 0 2616 2258 325 281 9 18 chr12 92357916 92358030 -51428425 - Charlie5 DNA MER1_type -2495 117 5 488 295 29 14 chr12 92358042 92358181 -51428274 - MIR3 SINE MIR -64 144 4 368 337 70 17 chr12 92358808 92358980 -51427475 + MIR3 SINE MIR 25 205 -3 2117 121 7 0 chr12 92359466 92359763 -51426692 + AluSq SINE Alu 5 303 -10 33 25 0 0 chr12 92360084 92360124 -51426331 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr12 92360632 92360668 -51425787 + AT_rich Low_complexity Low_complexity 1 36 0 1463 212 0 14 chr12 92362266 92362590 -51423865 + AluJo SINE Alu 1 320 0 1358 129 10 5 chr12 92363028 92363230 -51423225 + AluSq SINE Alu 1 203 -110 391 316 105 0 chr12 92363993 92364126 -51422329 + MIR SINE MIR 36 182 -80 22 0 0 0 chr12 92364161 92364183 -51422272 + AT_rich Low_complexity Low_complexity 1 22 0 234 187 200 13 chr12 92364749 92364824 -51421631 + MIR SINE MIR 171 259 -3 631 277 148 23 chr12 92364864 92365304 -51421151 - L1ME3A LINE L1 -209 6030 5539 23 0 0 0 chr12 92365452 92365475 -51420980 + AT_rich Low_complexity Low_complexity 1 23 0 821 257 82 4 chr12 92367477 92367757 -51418698 + MER46C DNA MER2_type 37 338 0 2376 271 93 37 chr12 92367793 92370344 -51416111 - L1MEc LINE L1 -2914 3301 660 30 0 0 0 chr12 92370510 92370540 -51415915 + AT_rich Low_complexity Low_complexity 1 30 0 314 297 54 9 chr12 92371788 92371899 -51414556 + MIR SINE MIR 128 243 -19 252 0 0 0 chr12 92373679 92373707 -51412748 + (CA)n Simple_repeat Simple_repeat 2 29 0 2108 129 0 0 chr12 92374064 92374359 -51412096 - AluSx SINE Alu -17 295 1 225 215 123 0 chr12 92376746 92376811 -51409644 + L1MC4 LINE L1 6621 6693 -1349 2348 52 0 11 chr12 92377131 92377922 -51408533 - L1PA5 LINE L1 0 6154 5221 1788 189 0 0 chr12 92380068 92380369 -51406086 + AluJb SINE Alu 1 301 -11 210 71 0 119 chr12 92382235 92382277 -51404178 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 1933 129 4 0 chr12 92382279 92382551 -51403904 - AluSx SINE Alu -36 276 4 664 226 45 0 chr12 92383610 92383765 -51402690 - L2 LINE L2 -15 3298 3137 184 261 0 0 chr12 92385584 92385630 -51400825 + MIR3 SINE MIR 155 200 -8 197 232 159 43 chr12 92386981 92387050 -51399405 + MIR SINE MIR 62 138 -70 22 35 0 0 chr12 92388554 92388583 -51397872 + AT_rich Low_complexity Low_complexity 1 29 0 365 330 124 11 chr12 92389329 92389428 -51397027 + L2 LINE L2 2607 2693 -621 447 19 0 0 chr12 92389428 92389480 -51396975 + (TG)n Simple_repeat Simple_repeat 2 53 0 365 330 124 11 chr12 92389480 92389565 -51396890 + L2 LINE L2 2693 2812 -502 180 0 0 0 chr12 92389578 92389598 -51396857 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 387 236 50 31 chr12 92389763 92389924 -51396531 - L1MC5 LINE L1 -35 7926 7763 3011 308 65 14 chr12 92390371 92391497 -51394958 + L2 LINE L2 264 1446 -1868 474 257 9 0 chr12 92391517 92391622 -51394833 + MER69 DNA AcHobo 27 132 -1094 1550 232 84 42 chr12 92391633 92392107 -51394348 + MER69 DNA AcHobo 347 840 -1686 4519 169 17 6 chr12 92392136 92393035 -51393420 - L1MC3 LINE L1 -743 5403 5187 22 80 0 0 chr12 92393288 92393338 -51393117 + AT_rich Low_complexity Low_complexity 1 50 0 2977 219 49 45 chr12 92393449 92394499 -51391956 + MER69 DNA AcHobo 1468 2521 -5 20105 151 29 54 chr12 92394516 92401241 -51385214 - L1M3 LINE L1 -443 7147 545 2457 68 7 0 chr12 92401241 92401550 -51384905 + AluY SINE Alu 1 311 0 20105 151 29 54 chr12 92401550 92402064 -51384391 - L1M3 LINE L1 -7045 545 20 26 64 0 0 chr12 92402381 92402428 -51384027 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr12 92402780 92402804 -51383651 + AT_rich Low_complexity Low_complexity 1 24 0 2154 57 5 4 chr12 92402972 92403813 -51382642 - L1PA7 LINE L1 -4 6150 5309 9728 93 16 0 chr12 92403924 92405304 -51381151 - L1PA7 LINE L1 -1111 5035 3634 484 279 136 61 chr12 92405319 92405437 -51381018 + L2 LINE L2 2744 2852 -461 1927 135 29 35 chr12 92405437 92405814 -51380641 - THE1C LTR MaLR 0 375 1 484 279 136 61 chr12 92405814 92406067 -51380388 + L2 LINE L2 2852 3148 -165 2185 244 36 26 chr12 92406067 92406548 -51379907 - MER119 DNA MER1_type 0 583 94 1587 205 22 38 chr12 92406548 92406919 -51379536 - MLT1A1 LTR MaLR 0 365 1 2185 244 36 26 chr12 92406919 92407014 -51379441 - MER119 DNA MER1_type -489 94 1 336 223 43 125 chr12 92407015 92407199 -51379256 + L2 LINE L2 3142 3310 -3 382 350 68 56 chr12 92407200 92407564 -51378891 - L1M4 LINE L1 -768 5378 5003 201 74 0 0 chr12 92407564 92407591 -51378864 + (TTA)n Simple_repeat Simple_repeat 2 28 0 382 350 68 56 chr12 92407591 92407795 -51378660 - L1M4 LINE L1 -1143 5003 4803 516 212 256 0 chr12 92410207 92410344 -51376111 + L2 LINE L2 2655 2826 -488 34 24 0 0 chr12 92410344 92410385 -51376070 + AT_rich Low_complexity Low_complexity 1 41 0 863 298 94 24 chr12 92410413 92410879 -51375576 + L2 LINE L2 2814 3312 -1 291 71 0 0 chr12 92410932 92410974 -51375481 + (TG)n Simple_repeat Simple_repeat 2 43 0 853 156 0 22 chr12 92410994 92411129 -51375326 + MER2 DNA MER2_type 1 132 -213 180 0 0 0 chr12 92412705 92412725 -51373730 + (A)n Simple_repeat Simple_repeat 1 20 0 201 74 0 0 chr12 92413352 92413379 -51373076 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 1129 186 59 30 chr12 92413938 92414175 -51372280 - MSTA LTR MaLR 0 428 185 284 0 28 0 chr12 92414176 92414212 -51372243 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 7769 14 0 0 chr12 92414212 92415343 -51371112 - L1PA2 LINE L1 -2 6153 5022 455 35 0 0 chr12 92415343 92415401 -51371054 + L1PA2 LINE L1 4970 5027 -1119 1229 103 15 26 chr12 92415401 92415596 -51370859 - MSTA LTR MaLR -235 193 1 1195 204 4 4 chr12 92415814 92416089 -51370366 + L1 LINE L1 5117 5391 -755 250 333 74 0 chr12 92416483 92416564 -51369891 - MIR SINE MIR -88 120 34 1182 181 5 5 chr12 92416623 92416822 -51369633 + AluJo SINE Alu 99 297 -15 236 307 69 20 chr12 92416831 92416932 -51369523 - MER5A DNA MER1_type -41 148 43 432 325 160 40 chr12 92417874 92418630 -51367825 + L2 LINE L2 1852 2698 -616 752 310 37 33 chr12 92419034 92419305 -51367150 - L2 LINE L2 0 3313 3042 33 0 0 0 chr12 92420112 92420145 -51366310 + AT_rich Low_complexity Low_complexity 1 33 0 3167 168 30 17 chr12 92420763 92421909 -51364546 - L1P4 LINE L1 -386 5780 4622 2087 118 3 7 chr12 92422052 92422349 -51364106 + AluSx SINE Alu 1 296 -16 687 243 129 36 chr12 92422362 92422731 -51363724 - L1ME LINE L1 -475 5687 5285 240 249 122 49 chr12 92422794 92422999 -51363456 - L1ME LINE L1 -942 5204 4985 501 372 4 4 chr12 92423010 92423249 -51363206 - ERVL LTR ERVL -2186 3578 3340 598 310 63 20 chr12 92423390 92423714 -51362741 - ERVL LTR ERVL -1900 3096 2737 711 314 65 31 chr12 92423745 92424098 -51362357 - ERVL LTR ERVL -2319 2677 2313 1187 280 48 75 chr12 92424118 92424386 -51362069 - ERVL LTR ERVL -3548 1448 1201 1751 195 0 22 chr12 92424386 92424704 -51361751 - AluJo SINE Alu 0 312 2 1187 280 48 75 chr12 92424704 92424992 -51361463 - ERVL LTR ERVL -3795 1201 907 325 239 21 4 chr12 92424994 92425137 -51361318 - MLT1A1 LTR MaLR -167 198 1 23 68 0 0 chr12 92425820 92425864 -51360591 + AT_rich Low_complexity Low_complexity 1 44 0 931 243 39 5 chr12 92425904 92426110 -51360345 - MER58A DNA MER1_type -11 213 1 2184 130 0 9 chr12 92426748 92427063 -51359392 + AluSx SINE Alu 1 312 0 318 336 58 0 chr12 92427506 92427643 -51358812 + MLT1J1 LTR MaLR 31 175 -271 1045 185 10 30 chr12 92427667 92427867 -51358588 - MER58A DNA MER1_type -1 223 28 665 217 96 18 chr12 92427967 92428133 -51358322 - L1ME LINE L1 -503 5663 5485 1560 299 128 2 chr12 92428263 92428741 -51357714 + MLT1H LTR MaLR 12 549 0 270 298 12 25 chr12 92428927 92429033 -51357422 + MIR SINE MIR 54 158 -50 299 247 11 11 chr12 92429072 92429165 -51357290 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 6894 13 0 0 chr12 92429334 92430116 -51356339 - L1PA3 LINE L1 0 6155 5374 * 22141 30 1 0 chr12 92430110 92432800 -51353655 + L1PA3 LINE L1 2687 5377 -769 199 245 113 0 chr12 92432973 92433026 -51353429 - MIR3 SINE MIR -10 198 140 257 316 92 10 chr12 92433118 92433216 -51353239 - MIR3 SINE MIR -93 115 10 21 0 0 0 chr12 92433263 92433284 -51353171 + AT_rich Low_complexity Low_complexity 1 21 0 347 308 98 0 chr12 92435595 92435728 -51350727 - L2 LINE L2 0 3313 3168 1113 214 149 4 chr12 92436556 92436818 -51349637 + AluJo SINE Alu 1 300 -2 246 333 69 26 chr12 92436957 92437188 -51349267 + L1ME LINE L1 5317 5557 -605 2300 57 20 20 chr12 92437192 92437490 -51348965 + AluY SINE Alu 4 301 -10 22 0 0 0 chr12 92437919 92437941 -51348514 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 92438133 92438161 -51348294 + AT_rich Low_complexity Low_complexity 1 28 0 230 277 84 0 chr12 92438370 92438453 -51348002 - MLT1I LTR MaLR 0 409 320 255 292 88 26 chr12 92438622 92438735 -51347720 - MLT1J1 LTR MaLR -296 150 31 21 57 0 0 chr12 92438799 92438834 -51347621 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr12 92438934 92438959 -51347496 + AT_rich Low_complexity Low_complexity 1 25 0 638 271 65 19 chr12 92438998 92439212 -51347243 - MIR SINE MIR -1 261 38 2579 80 17 0 chr12 92439274 92439623 -51346832 - THE1A LTR MaLR 0 355 1 28 0 0 0 chr12 92439887 92439915 -51346540 + AT_rich Low_complexity Low_complexity 1 28 0 362 281 137 14 chr12 92441520 92441659 -51344796 - MER5B DNA MER1_type -22 156 1 2069 198 46 21 chr12 92441920 92442150 -51344305 - MER74C LTR ERVL 0 460 212 2461 137 3 13 chr12 92442150 92442529 -51343926 - THE1C LTR MaLR 0 375 1 2069 198 46 21 chr12 92442529 92442733 -51343722 - MER74C LTR ERVL -248 212 15 653 279 58 22 chr12 92442733 92442959 -51343496 - HERVL74 LTR ERVL -485 5200 4967 7096 201 37 10 chr12 92443039 92444481 -51341974 - HERVL74 LTR ERVL -3140 2545 1065 2609 71 5 59 chr12 92444642 92444987 -51341468 - L1PA6 LINE L1 0 6154 5833 2394 80 0 10 chr12 92444987 92445299 -51341156 - AluY SINE Alu -2 309 1 2609 71 5 59 chr12 92445299 92445360 -51341095 - L1PA6 LINE L1 -321 5833 5770 27401 58 8 3 chr12 92445377 92449740 -51336715 - L1PA4 LINE L1 -3 6467 2080 1347 155 0 5 chr12 92449791 92450004 -51336451 - L1PA4 LINE L1 -6240 221 10 555 230 62 56 chr12 92450017 92450195 -51336260 - HERVL74 LTR ERVL -2571 985 807 1105 237 42 28 chr12 92450924 92451516 -51334939 + L1MC3 LINE L1 2049 2478 -3948 10930 135 14 29 chr12 92451516 92453336 -51333119 - Tigger1 DNA MER2_type -2 2416 623 21 0 0 0 chr12 92453336 92453357 -51333098 + AT_rich Low_complexity Low_complexity 1 21 0 751 144 0 0 chr12 92453374 92453499 -51332956 + L1P LINE L1 3821 3945 -2201 1422 219 98 10 chr12 92453499 92453888 -51332567 - LTR22 LTR ERVK 0 509 87 8007 96 2 3 chr12 92453954 92455941 -51330514 + L1PA7 LINE L1 4164 6154 0 3320 186 13 11 chr12 92455949 92456566 -51329889 - Tigger1 DNA MER2_type -1800 618 1 1018 240 107 52 chr12 92456680 92457026 -51329429 - MLT1A1 LTR MaLR 0 365 1 2695 268 39 28 chr12 92457029 92457999 -51328456 + L1MC3 LINE L1 2730 3715 -2711 2058 157 19 19 chr12 92457999 92458374 -51328081 - THE1C LTR MaLR 0 375 1 2695 268 39 28 chr12 92458374 92458568 -51327887 + L1MC3 LINE L1 3715 3906 -2520 3132 37 0 0 chr12 92459065 92459442 -51327013 - L1PA3 LINE L1 -3 6152 5776 4102 25 2 0 chr12 92459442 92459931 -51326524 + L1PA3 LINE L1 5287 5776 -379 3555 249 52 36 chr12 92459923 92460486 -51325969 + L1MC3 LINE L1 3892 4445 -1981 * 306 0 0 0 chr12 92460486 92460520 -51325935 + (TG)n Simple_repeat Simple_repeat 1 34 0 3555 249 52 36 chr12 92460520 92461223 -51325232 + L1MC3 LINE L1 4445 5178 -1248 1671 205 21 18 chr12 92461223 92461559 -51324896 - MLT1A1 LTR MaLR 0 365 29 5412 214 45 10 chr12 92461559 92462897 -51323558 + L1MC3 LINE L1 5514 5667 -759 315 111 0 0 chr12 92462899 92462944 -51323511 - MLT2C1 LTR ERVL -2 395 351 189 0 0 0 chr12 92462977 92462998 -51323457 + (TG)n Simple_repeat Simple_repeat 2 22 0 219 36 0 0 chr12 92463008 92463036 -51323419 + (GA)n Simple_repeat Simple_repeat 2 29 0 1549 256 12 71 chr12 92463042 92463535 -51322920 - MLT2B1 LTR ERVL -56 464 1 1773 150 68 6 chr12 92463535 92463874 -51322581 - ERVL-B1 LTR ERVL -7 5757 5398 2096 189 76 11 chr12 92463903 92464337 -51322118 - ERVL LTR ERVL -2105 3659 3198 1310 194 16 8 chr12 92464335 92464582 -51321873 - ERVL LTR ERVL -2800 2964 2716 * 4172 217 14 2 chr12 92464598 92465543 -51320912 + L1P LINE L1 4351 5306 -840 2564 214 58 32 chr12 92465564 92466185 -51320270 - ERVL LTR ERVL -4094 1670 1034 1201 239 24 58 chr12 92466195 92466571 -51319884 + MLT1A2 LTR MaLR 1 363 -11 458 123 9 28 chr12 92466645 92466751 -51319704 + (TA)n Simple_repeat Simple_repeat 2 105 0 1022 222 43 27 chr12 92466751 92467078 -51319377 + L1MC3 LINE L1 6571 6861 -924 774 193 70 0 chr12 92467091 92467278 -51319177 + L1MC3 LINE L1 7542 7741 -44 556 314 40 35 chr12 92467965 92468312 -51318143 - MLT2F LTR ERVL 0 663 315 296 179 33 15 chr12 92468291 92468370 -51318085 - MLT2E LTR ERVL -542 86 5 * 297 278 53 45 chr12 92468489 92468622 -51317833 + MIR SINE MIR 71 204 -58 1764 226 62 58 chr12 92468642 92469194 -51317261 + MLT2B3 LTR ERVL 1 554 0 214 200 0 0 chr12 92469209 92469249 -51317206 + L2 LINE L2 3256 3295 -18 823 202 49 20 chr12 92469971 92470174 -51316281 - MER6B DNA MER2_type -1 209 1 1260 248 90 57 chr12 92471802 92472290 -51314165 + MLT1D LTR MaLR 1 504 -1 230 326 80 51 chr12 92472384 92472522 -51313933 - L2 LINE L2 -213 3059 2918 479 297 61 36 chr12 92472760 92472925 -51313530 + MER63A DNA MER1_type 41 209 -1 281 313 53 1 chr12 92473690 92473828 -51312627 - L2 LINE L2 -5 3308 3150 913 221 0 54 chr12 92474787 92474991 -51311464 + AluJo SINE Alu 1 193 -119 999 186 6 0 chr12 92475002 92475174 -51311281 + FRAM SINE Alu 1 168 -8 414 250 0 0 chr12 92478311 92478423 -51308032 + L1M4 LINE L1 2669 2780 -3366 270 301 78 0 chr12 92478710 92478813 -51307642 + MIR SINE MIR 29 139 -123 409 287 128 78 chr12 92478837 92479196 -51307259 + MLT1L LTR MaLR 3 379 -236 1105 281 43 26 chr12 92479411 92480019 -51306436 + L2 LINE L2 2690 3311 -2 332 298 0 0 chr12 92480282 92480366 -51306089 - L2 LINE L2 -5 3308 3225 32 67 0 0 chr12 92480770 92480830 -51305625 + AT_rich Low_complexity Low_complexity 1 60 0 716 87 0 0 chr12 92481267 92481370 -51305085 - L1PA5 LINE L1 -1 6153 6051 542 180 63 0 chr12 92481370 92481475 -51304980 + MER66B LTR ERV1 292 403 -83 231 114 0 0 chr12 92481475 92481510 -51304945 + (A)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr12 92481593 92481616 -51304839 + (A)n Simple_repeat Simple_repeat 1 23 0 848 248 69 47 chr12 92482401 92482719 -51303736 - MLT1A1 LTR MaLR 0 365 41 280 280 49 24 chr12 92483083 92483267 -51303188 + ERVL LTR ERVL 1758 1926 -3559 501 293 0 0 chr12 92483395 92483518 -51302937 + ERVL LTR ERVL 2307 2429 -3225 372 269 31 0 chr12 92483530 92483660 -51302795 + L1MC3 LINE L1 2640 2773 -3373 5052 108 28 1 chr12 92483667 92484453 -51302002 - L1P LINE L1 -2777 3369 2563 6058 80 12 3 chr12 92484455 92485700 -51300755 + L1P3 LINE L1 4519 5775 -379 * 7709 236 69 27 chr12 92485687 92487712 -51298743 + L1MC3 LINE L1 4479 6690 -1095 243 0 0 0 chr12 92487712 92487739 -51298716 + (TA)n Simple_repeat Simple_repeat 1 27 0 7709 236 69 27 chr12 92487739 92488876 -51297579 + L1MC3 LINE L1 6690 7777 -8 1748 164 25 0 chr12 92491665 92491951 -51294504 - AluJb SINE Alu -19 293 1 1024 309 65 37 chr12 92493842 92494301 -51292154 + MLT1K LTR MaLR 7 478 -110 714 286 100 5 chr12 92494581 92494801 -51291654 + MIR SINE MIR 10 250 -12 37 52 0 0 chr12 92494813 92494871 -51291584 + AT_rich Low_complexity Low_complexity 1 58 0 201 375 29 10 chr12 92495021 92495125 -51291330 - L2 LINE L2 -17 3296 3191 184 304 36 0 chr12 92495207 92495263 -51291192 - L2 LINE L2 -211 3061 3004 180 0 0 0 chr12 92495870 92495890 -51290565 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr12 92496737 92496758 -51289697 + AT_rich Low_complexity Low_complexity 1 21 0 9285 12 0 0 chr12 92496758 92498617 -51287838 - L1HS LINE L1 -3 6152 4294 6110 24 0 0 chr12 92498615 92499326 -51287129 + L1HS LINE L1 3568 4278 -1868 * 193 29 59 0 chr12 92499630 92499664 -51286791 + (TTA)n Simple_repeat Simple_repeat 1 36 0 8821 26 0 0 chr12 92499665 92501463 -51284992 - L1PA3 LINE L1 -18 6137 4340 3540 21 5 0 chr12 92501463 92501881 -51284574 + L1PA3 LINE L1 3902 4321 -1825 216 312 32 81 chr12 92502685 92502871 -51283584 - L2 LINE L2 -740 2574 2398 951 269 132 35 chr12 92503029 92503969 -51282486 + L1M4 LINE L1 3035 4065 -2081 429 339 104 0 chr12 92503975 92504205 -51282250 - L2 LINE L2 -1074 2240 1987 2033 132 3 19 chr12 92504209 92504520 -51281935 + AluSq SINE Alu 3 308 -5 714 148 16 8 chr12 92504970 92505098 -51281357 + L1MB3 LINE L1 6054 6182 -1 423 219 18 18 chr12 92505101 92505215 -51281240 + Charlie2 DNA MER1_type 2707 2820 -42 2337 68 0 29 chr12 92505639 92505948 -51280507 + AluY SINE Alu 1 300 -11 615 159 136 0 chr12 92506358 92506490 -51279965 + ORSL DNA AcHobo 14 163 -112 28 61 0 0 chr12 92507448 92507497 -51278958 + AT_rich Low_complexity Low_complexity 1 49 0 324 48 0 0 chr12 92507709 92507751 -51278704 + (TG)n Simple_repeat Simple_repeat 1 42 0 28 48 0 0 chr12 92507842 92507884 -51278571 + AT_rich Low_complexity Low_complexity 1 42 0 483 341 36 0 chr12 92508479 92508617 -51277838 + MER91A DNA MER1_type 3 145 -51 189 313 0 0 chr12 92508888 92508936 -51277519 + L2 LINE L2 3207 3254 -18 258 309 32 43 chr12 92510174 92510268 -51276187 - L2 LINE L2 -65 3207 3115 781 259 3 102 chr12 92510905 92511210 -51275245 + MLT1I LTR MaLR 100 374 -35 21 0 0 0 chr12 92511413 92511434 -51275021 + AT_rich Low_complexity Low_complexity 1 21 0 1001 239 4 29 chr12 92511851 92512090 -51274365 - MER8 DNA MER2_type 0 239 7 2723 87 3 0 chr12 92512274 92512642 -51273813 - L1PA13 LINE L1 -457 5706 5338 3156 103 11 2 chr12 92512642 92513098 -51273357 + L1PA13 LINE L1 5696 6163 0 23 0 0 0 chr12 92513924 92513947 -51272508 + AT_rich Low_complexity Low_complexity 1 23 0 243 286 19 19 chr12 92514448 92514553 -51271902 - L1ME LINE L1 -275 5889 5785 28 48 0 0 chr12 92514597 92514639 -51271816 + AT_rich Low_complexity Low_complexity 1 42 0 352 287 142 26 chr12 92515020 92515404 -51271051 - L1M4c LINE L1 -810 1697 1263 251 266 0 43 chr12 92515811 92515905 -51270550 + L1MC4 LINE L1 6614 6703 -1339 233 310 23 0 chr12 92515865 92515952 -51270503 - L1MC4 LINE L1 -1339 6703 6615 * 233 257 27 0 chr12 92515965 92516039 -51270416 - L1MC4 LINE L1 -1339 6703 6628 255 281 61 43 chr12 92516755 92516919 -51269536 + HAL1b LINE L1 746 912 -436 305 216 133 110 chr12 92517033 92517288 -51269167 + HAL1 LINE L1 2246 2506 -1 190 306 167 0 chr12 92519287 92519395 -51267060 - MIR SINE MIR -11 251 126 320 348 59 32 chr12 92519500 92519721 -51266734 - L3 LINE CR1 -5 1572 1346 2048 127 0 0 chr12 92519780 92520116 -51266339 - AluSx SINE Alu 0 336 1 264 268 0 0 chr12 92520174 92520230 -51266225 + MLT1F LTR MaLR 24 79 -463 334 265 34 17 chr12 92520444 92520561 -51265894 + MLT1I LTR MaLR 431 549 0 445 309 130 22 chr12 92520830 92521060 -51265395 - MIR SINE MIR 0 262 8 193 294 24 47 chr12 92521879 92521964 -51264491 + MIR SINE MIR 3 85 -177 1098 174 0 55 chr12 92521975 92522194 -51264261 + Tigger1 DNA MER2_type 25 231 -2187 5020 129 26 4 chr12 92522225 92524116 -51262339 - L1PA15 LINE L1 0 6165 4278 998 179 47 0 chr12 92524118 92524308 -51262147 + L1PA15-16 LINE L1 2382 2580 -4269 579 227 113 7 chr12 92524329 92524479 -51261976 - FRAM SINE Alu 0 166 1 537 292 47 23 chr12 92524485 92524656 -51261799 + MIR SINE MIR 84 258 -4 186 103 0 0 chr12 92524658 92524687 -51261768 + (ATG)n Simple_repeat Simple_repeat 1 29 0 255 360 79 5 chr12 92526837 92527040 -51259415 - L1ME LINE L1 -315 5855 5638 1340 213 180 19 chr12 92527271 92527704 -51258751 - MLT1D LTR MaLR 0 505 3 1859 147 19 17 chr12 92527933 92528294 -51258161 - L1MA2 LINE L1 0 6304 5943 8595 203 74 9 chr12 92528298 92530048 -51256407 - L1M1 LINE L1 -5689 1876 12 496 272 107 78 chr12 92530148 92530181 -51256274 - L1ME LINE L1 -1102 5044 5013 2632 98 20 3 chr12 92530181 92530539 -51255916 - THE1B LTR MaLR 0 364 1 496 272 107 78 chr12 92530539 92530912 -51255543 - L1ME LINE L1 -1133 5013 4614 2166 82 4 4 chr12 92530912 92531223 -51255232 - AluSc SINE Alu 0 311 1 496 272 107 78 chr12 92531223 92531387 -51255068 - L1ME LINE L1 -1532 4614 4456 2037 75 0 19 chr12 92531407 92531696 -51254759 - AluY SINE Alu 0 304 21 285 186 0 0 chr12 92532031 92532101 -51254354 + T-rich Low_complexity Low_complexity 1 70 0 219 139 0 0 chr12 92533698 92533734 -51252721 + (CCG)n Simple_repeat Simple_repeat 2 37 0 320 279 146 28 chr12 92533943 92534197 -51252258 - L1ME LINE L1 -2178 3968 3685 24 0 0 0 chr12 92534238 92534262 -51252193 + AT_rich Low_complexity Low_complexity 1 24 0 569 293 123 62 chr12 92534370 92535112 -51251343 - L1ME LINE L1 -2647 3499 2652 2053 107 34 57 chr12 92535121 92535505 -51250950 + THE1C LTR MaLR 1 375 0 382 354 53 11 chr12 92535933 92536196 -51250259 - L1M2 LINE L1 -4248 2859 2586 5183 177 28 10 chr12 92536680 92536837 -51249618 - L1MA9 LINE L1 -1 6311 6158 213 39 0 0 chr12 92536837 92536863 -51249592 + (TG)n Simple_repeat Simple_repeat 1 26 0 5183 177 28 10 chr12 92536863 92537949 -51248506 - L1MA9 LINE L1 -154 6158 5046 1464 173 7 42 chr12 92537956 92538262 -51248193 + L1MA9 LINE L1 4757 5051 -1095 * 1775 198 21 41 chr12 92538245 92538666 -51247789 - L1M2 LINE L1 -5703 1327 1 23 0 0 0 chr12 92538678 92538701 -51247754 + AT_rich Low_complexity Low_complexity 1 23 0 610 225 53 0 chr12 92541477 92541628 -51244827 - MER105 DNA DNA -45 159 1 1826 249 21 40 chr12 92541655 92542182 -51244273 - LTR40a LTR ERVL -2 517 1 1883 204 19 40 chr12 92543794 92544270 -51242185 + L1MB8 LINE L1 5603 6068 -110 284 295 0 2 chr12 92544275 92544361 -51242094 + AluSg/x SINE Alu 137 205 -97 617 157 8 16 chr12 92544387 92544508 -51241947 + L1MB8 LINE L1 6059 6178 0 224 169 0 17 chr12 92545431 92545490 -51240965 + (CA)n Simple_repeat Simple_repeat 2 59 0 261 405 27 27 chr12 92545641 92545827 -51240628 - L2 LINE L2 -40 3273 3085 267 31 0 0 chr12 92545827 92545859 -51240596 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 405 27 27 chr12 92545859 92546008 -51240447 - L2 LINE L2 -227 3086 2938 201 250 0 0 chr12 92546371 92546407 -51240048 + L2 LINE L2 3210 3245 -27 662 370 132 18 chr12 92546644 92547304 -51239151 - L2 LINE L2 -369 2945 2211 232 348 54 0 chr12 92547639 92547731 -51238724 - L2 LINE L2 -39 3233 3137 2608 141 0 2 chr12 92548179 92548590 -51237865 - L1PA15 LINE L1 0 6165 5756 813 292 164 20 chr12 92548751 92549105 -51237350 + L2 LINE L2 2631 2932 -381 618 301 72 16 chr12 92549105 92549533 -51236922 + LTR16A1 LTR ERVL 4 455 -2 813 292 164 20 chr12 92549533 92549772 -51236683 + L2 LINE L2 2932 3313 0 1776 118 63 17 chr12 92549821 92550108 -51236347 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr12 92550364 92550385 -51236070 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 92551376 92551399 -51235056 + AT_rich Low_complexity Low_complexity 1 23 0 1001 198 53 5 chr12 92551433 92551640 -51234815 + MER20 DNA MER1_type 1 217 -2 216 276 17 0 chr12 92551999 92552057 -51234398 - L2 LINE L2 -6 3307 3249 1912 183 5 35 chr12 92552362 92552762 -51233693 + MLT1B LTR MaLR 1 388 -2 244 374 30 0 chr12 92552805 92552904 -51233551 + MIR3 SINE MIR 65 166 -42 24 0 0 0 chr12 92553153 92553177 -51233278 + AT_rich Low_complexity Low_complexity 1 24 0 272 47 0 23 chr12 92554309 92554352 -51232103 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 296 300 31 50 chr12 92554384 92554544 -51231911 + MLT1J LTR MaLR 90 246 -265 2884 92 39 16 chr12 92555383 92555817 -51230638 - MLT2A1 LTR ERVL 0 444 1 751 286 71 44 chr12 92556603 92557012 -51229443 + MLT1J LTR MaLR 21 440 -71 190 326 61 10 chr12 92558086 92558184 -51228271 - L2 LINE L2 -32 3240 3138 22 56 0 0 chr12 92558338 92558374 -51228081 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr12 92558619 92558649 -51227806 + (GA)n Simple_repeat Simple_repeat 1 30 0 210 37 0 0 chr12 92559909 92559936 -51226519 + (CAA)n Simple_repeat Simple_repeat 1 27 0 211 338 58 58 chr12 92560665 92560905 -51225550 - L2 LINE L2 -461 2853 2614 2174 116 0 0 chr12 92563541 92563842 -51222613 + AluSc SINE Alu 1 301 -8 737 246 17 17 chr12 92563987 92564162 -51222293 + FAM SINE Alu 1 175 0 452 362 27 7 chr12 92564846 92564995 -51221460 + L2 LINE L2 3121 3272 0 276 192 26 59 chr12 92566234 92566335 -51220120 - MLT1I LTR MaLR -8 422 318 2264 73 0 14 chr12 92566452 92566763 -51219692 - AluY SINE Alu 0 307 1 1782 219 62 7 chr12 92566972 92567410 -51219045 + MLT1C LTR MaLR 6 467 0 23 0 0 0 chr12 92567960 92567983 -51218472 + AT_rich Low_complexity Low_complexity 1 23 0 230 314 86 0 chr12 92572517 92572587 -51213868 - L2 LINE L2 -56 3216 3141 223 225 28 0 chr12 92574639 92574710 -51211745 + (TTAAA)n Simple_repeat Simple_repeat 5 77 0 2728 102 10 5 chr12 92574955 92575356 -51211099 + L1PA13 LINE L1 5754 6156 -7 263 273 273 14 chr12 92576012 92576155 -51210300 - MIR SINE MIR -42 220 41 196 308 44 22 chr12 92577138 92577229 -51209226 + L2 LINE L2 3177 3269 -44 883 230 70 115 chr12 92577240 92577841 -51208614 - MER34C LTR ERV1 0 585 12 350 281 18 13 chr12 92578763 92578889 -51207566 + MIR SINE MIR 21 149 -63 22 0 0 0 chr12 92579711 92579733 -51206722 + AT_rich Low_complexity Low_complexity 1 22 0 535 161 17 0 chr12 92581069 92581187 -51205268 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 362 355 65 35 chr12 92581308 92581649 -51204806 + L1MEc LINE L1 34 384 -6012 1615 230 38 69 chr12 92581996 92582144 -51204311 + L1ME2 LINE L1 5399 5550 -614 2068 122 162 11 chr12 92582144 92582514 -51203941 + MSTA LTR MaLR 1 426 -2 1615 230 38 69 chr12 92582514 92582944 -51203511 + L1ME2 LINE L1 5550 5959 -205 234 128 0 0 chr12 92582999 92583038 -51203417 + MER3 DNA MER1_type 11 49 -160 302 231 0 0 chr12 92583062 92583140 -51203315 + L1ME2 LINE L1 6086 6163 -1 809 267 69 9 chr12 92584279 92584511 -51201944 + MIR SINE MIR 11 256 -6 268 248 152 24 chr12 92584760 92584885 -51201570 - MIR SINE MIR 0 262 122 6887 55 3 22 chr12 92586933 92588603 -51197852 + L1PA7 LINE L1 4504 6153 -1 236 271 100 0 chr12 92588879 92588949 -51197506 + MIR SINE MIR 116 192 -70 236 351 69 0 chr12 92589032 92589163 -51197292 - L2 LINE L2 -1019 2295 2156 23 78 0 0 chr12 92589199 92589250 -51197205 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr12 92590308 92590340 -51196115 + AT_rich Low_complexity Low_complexity 1 32 0 189 231 19 106 chr12 92590935 92591039 -51195416 - MIR SINE MIR -30 232 138 2252 233 58 3 chr12 92591066 92592000 -51194455 + MER65A-int LTR ERV1 3763 4852 -19 2296 166 11 42 chr12 92592014 92592471 -51193984 + MER65A LTR ERV1 1 443 -2 751 194 97 11 chr12 92593541 92593716 -51192739 - LTR47A LTR ERVL -2 450 261 1269 211 3 53 chr12 92594065 92594364 -51192091 - MER74C LTR ERVL -1 459 176 2203 160 100 32 chr12 92595158 92595627 -51190828 - MER67D LTR ERV1 -9 505 5 252 0 0 0 chr12 92595789 92595817 -51190638 + (T)n Simple_repeat Simple_repeat 1 28 0 2059 157 88 2 chr12 92596497 92596893 -51189562 - MSTB1 LTR MaLR -2 430 1 432 353 92 16 chr12 92597980 92598229 -51188226 - L3b LINE CR1 -20 1563 1296 263 373 81 6 chr12 92598260 92598421 -51188034 - MIR3 SINE MIR -20 188 16 1210 189 63 3 chr12 92599540 92599825 -51186630 + L1MA8 LINE L1 5985 6286 -5 310 261 148 9 chr12 92600186 92600301 -51186154 + L2 LINE L2 3137 3267 -5 257 306 12 12 chr12 92600953 92601038 -51185417 - MIR SINE MIR -17 245 161 6251 37 1 1 chr12 92602088 92602839 -51183616 - L1PA4 LINE L1 -4 6151 5401 701 294 57 37 chr12 92603073 92603474 -51182981 + L1M4 LINE L1 2928 3336 -2810 26 0 0 0 chr12 92603551 92603577 -51182878 + AT_rich Low_complexity Low_complexity 1 26 0 237 279 31 16 chr12 92603778 92603907 -51182548 + L1M4 LINE L1 4561 4691 -1455 23 54 0 0 chr12 92604209 92604246 -51182209 + AT_rich Low_complexity Low_complexity 1 37 0 661 328 53 25 chr12 92604876 92605346 -51181109 + L1ME LINE L1 4123 4605 -1541 358 275 49 35 chr12 92605502 92605644 -51180811 - MER5A DNA MER1_type -3 186 43 21 0 0 0 chr12 92605982 92606003 -51180452 + AT_rich Low_complexity Low_complexity 1 21 0 261 153 68 34 chr12 92606878 92606937 -51179518 + FLAM_A SINE Alu 70 124 -9 304 281 137 38 chr12 92606974 92607238 -51179217 + L1ME LINE L1 5374 5663 -458 256 380 16 8 chr12 92607433 92607554 -51178901 + L2 LINE L2 3184 3305 -8 3639 159 38 13 chr12 92607744 92608453 -51178002 + L1MA9 LINE L1 5581 6307 -5 2374 133 126 14 chr12 92608685 92609056 -51177399 - MER31A LTR ERV1 0 485 56 3615 141 67 38 chr12 92609056 92609763 -51176692 + LTR8A LTR ERV1 1 727 0 2374 133 126 14 chr12 92609763 92609827 -51176628 - MER31A LTR ERV1 -429 56 1 2200 106 50 34 chr12 92609864 92610222 -51176233 + THE1B LTR MaLR 1 364 0 229 233 67 0 chr12 92610791 92610881 -51175574 + L1ME4a LINE L1 5993 6088 -33 21 36 0 0 chr12 92611612 92611640 -51174815 + AT_rich Low_complexity Low_complexity 1 28 0 315 245 0 0 chr12 92611768 92611862 -51174593 + (TATG)n Simple_repeat Simple_repeat 3 96 0 207 375 50 0 chr12 92612790 92612870 -51173585 + L2 LINE L2 3143 3226 -46 24 0 0 0 chr12 92613541 92613565 -51172890 + AT_rich Low_complexity Low_complexity 1 24 0 228 293 17 35 chr12 92614104 92614220 -51172235 - MIR SINE MIR 0 262 149 813 309 119 19 chr12 92615145 92615681 -51170774 + L2 LINE L2 2712 3313 0 1067 311 87 32 chr12 92615766 92616329 -51170126 - L3 LINE CR1 -341 1236 643 23 33 0 0 chr12 92616663 92616693 -51169762 + AT_rich Low_complexity Low_complexity 1 30 0 542 321 119 23 chr12 92617262 92617614 -51168841 - MLT1I LTR MaLR -20 389 4 349 301 76 63 chr12 92617731 92617884 -51168571 + L1M4 LINE L1 3794 3944 -2202 1959 148 3 0 chr12 92617884 92618182 -51168273 - AluJb SINE Alu -11 301 3 349 301 76 63 chr12 92618182 92618675 -51167780 + L1M4 LINE L1 3944 4448 -1698 1285 96 15 0 chr12 92618948 92619145 -51167310 - L1PA13 LINE L1 -5 6158 5959 5097 185 16 14 chr12 92619262 92620926 -51165529 + L1PA16 LINE L1 4125 5827 -339 2291 88 21 19 chr12 92620929 92621325 -51165130 - LTR7 LTR ERV1 -2 448 1 2413 98 45 13 chr12 92621325 92621703 -51164752 - HERVH LTR ERV1 0 7713 7324 1464 129 0 5 chr12 92621703 92621927 -51164528 - HERVH LTR ERV1 -1894 5819 5597 * 2892 125 28 7 chr12 92621917 92622524 -51163931 - HERVH LTR ERV1 -2558 5155 4488 5649 101 17 4 chr12 92622526 92623369 -51163086 - HERVH LTR ERV1 -3720 3993 3140 * 13159 136 17 37 chr12 92623348 92626157 -51160298 - HERVH LTR ERV1 -4718 2995 1 2678 85 95 5 chr12 92626160 92626571 -51159884 - LTR7 LTR ERV1 -2 448 1 737 137 15 30 chr12 92626571 92626702 -51159753 + L1PA16 LINE L1 5825 5953 -213 525 128 81 142 chr12 92626707 92626805 -51159650 + FLAM_C SINE Alu 5 107 -205 342 0 0 0 chr12 92626805 92626843 -51159612 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7658 20 1 1 chr12 92626843 92628403 -51158052 - L1PA2 LINE L1 -13 6142 4583 525 128 81 142 chr12 92628403 92628440 -51158015 + FLAM_C SINE Alu 106 134 -178 1263 129 9 18 chr12 92628440 92628664 -51157791 + L1PA16 LINE L1 5945 6166 0 2536 111 17 6 chr12 92629028 92629387 -51157068 + THE1B LTR MaLR 1 363 -1 22 0 0 0 chr12 92629918 92629940 -51156515 + AT_rich Low_complexity Low_complexity 1 22 0 887 200 28 28 chr12 92629956 92630171 -51156284 + L1MD3 LINE L1 7730 7944 -51 2005 113 23 23 chr12 92630784 92631084 -51155371 + AluSg SINE Alu 1 300 -10 1496 209 65 59 chr12 92632422 92632881 -51153574 - MLT1C LTR MaLR -1 466 5 296 213 83 93 chr12 92633209 92633317 -51153138 - Charlie8 DNA MER1_type -2143 274 168 1211 177 121 26 chr12 92633347 92633612 -51152843 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr12 92633672 92633696 -51152759 + AT_rich Low_complexity Low_complexity 1 24 0 744 270 40 9 chr12 92633893 92634115 -51152340 + L2 LINE L2 1378 1606 -1708 267 31 0 0 chr12 92634128 92634160 -51152295 + (TC)n Simple_repeat Simple_repeat 1 32 0 338 272 212 18 chr12 92634197 92634414 -51152041 + L2 LINE L2 1850 2108 -1206 1101 246 31 23 chr12 92634618 92634968 -51151487 + LTR52 LTR ERVL 69 421 0 504 290 18 30 chr12 92636104 92636273 -51150182 - MER63A DNA MER1_type -2 208 42 1988 169 20 6 chr12 92637460 92637816 -51148639 + MLT1A1 LTR MaLR 1 361 -4 264 111 0 0 chr12 92637903 92637948 -51148507 + (TC)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr12 92638524 92638553 -51147902 + AT_rich Low_complexity Low_complexity 1 29 0 1789 167 191 50 chr12 92639012 92639168 -51147287 + MLT2B1 LTR ERVL 1 134 -386 2599 119 46 5 chr12 92639168 92639579 -51146876 - MSTA LTR MaLR 0 428 1 1789 167 191 50 chr12 92639579 92639838 -51146617 + MLT2B1 LTR ERVL 134 488 -32 507 17 0 0 chr12 92639838 92639898 -51146557 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1789 167 191 50 chr12 92639898 92639937 -51146518 + MLT2B1 LTR ERVL 488 520 0 1451 121 0 29 chr12 92640001 92640178 -51146277 - L1P4 LINE L1 -549 5617 5447 2197 195 19 30 chr12 92640178 92640233 -51146222 + MSTB LTR MaLR 1 55 -371 2149 140 0 0 chr12 92640233 92640541 -51145914 + AluSg SINE Alu 1 308 -2 2197 195 19 30 chr12 92640541 92640916 -51145539 + MSTB LTR MaLR 55 426 0 1451 121 0 29 chr12 92640916 92640978 -51145477 - L1P4 LINE L1 -719 5447 5385 666 216 81 38 chr12 92640979 92641164 -51145291 - MLT1A1 LTR MaLR -51 377 185 10392 93 7 11 chr12 92641196 92642022 -51144433 - L1PA7 LINE L1 -1 6153 5325 2429 69 7 10 chr12 92642022 92642326 -51144129 - AluY SINE Alu -8 303 1 10392 93 7 11 chr12 92642326 92643777 -51142678 - L1PA7 LINE L1 -829 5325 3880 17152 128 12 25 chr12 92643777 92646718 -51139737 - L1PA7 LINE L1 -2507 3639 738 605 218 8 0 chr12 92647049 92647173 -51139282 + FLAM_A SINE Alu 17 141 -1 22 0 0 0 chr12 92647396 92647418 -51139037 + AT_rich Low_complexity Low_complexity 1 22 0 547 276 66 39 chr12 92647590 92647771 -51138684 + MIR SINE MIR 13 198 -64 1151 106 39 0 chr12 92647829 92648009 -51138446 + L1P LINE L1 5095 5281 -865 7129 53 1 2 chr12 92648009 92648961 -51137494 + L1PA5 LINE L1 5204 6154 0 713 185 22 7 chr12 92648975 92649110 -51137345 - MLT1A1 LTR MaLR -224 141 5 761 278 91 21 chr12 92649165 92649496 -51136959 + L1ME1 LINE L1 5808 6161 -5 224 362 89 22 chr12 92649929 92650153 -51136302 - L2 LINE L2 -1 3312 3074 237 204 0 0 chr12 92650157 92650206 -51136249 - L1ME LINE L1 -509 5657 5609 473 129 0 0 chr12 92650206 92650276 -51136179 - MLT2C1 LTR ERVL -327 70 1 452 203 38 101 chr12 92650276 92650434 -51136021 + L1ME LINE L1 5401 5548 -618 * 1864 231 19 81 chr12 92650433 92651173 -51135282 + L1M4 LINE L1 2872 3565 -2581 878 271 103 62 chr12 92651173 92651725 -51134730 - MLT1G LTR MaLR -52 538 1 221 267 0 17 chr12 92652042 92652102 -51134353 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1762 157 47 37 chr12 92652262 92652645 -51133810 + MLT1B LTR MaLR 4 390 0 1685 170 35 3 chr12 92652678 92652960 -51133495 + AluJb SINE Alu 1 291 -21 1273 99 5 16 chr12 92653688 92653879 -51132576 - THE1A LTR MaLR 0 355 167 243 79 0 0 chr12 92654166 92654204 -51132251 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 209 370 31 39 chr12 92654214 92654341 -51132114 + MIR SINE MIR 20 145 -63 229 292 31 85 chr12 92654524 92654654 -51131801 - MIR SINE MIR -8 254 132 210 217 72 14 chr12 92654733 92654802 -51131653 - MIR SINE MIR -109 153 81 198 0 0 0 chr12 92655521 92655543 -51130912 + (T)n Simple_repeat Simple_repeat 1 22 0 533 253 54 36 chr12 92656398 92656564 -51129891 + MIR SINE MIR 1 169 -93 2503 93 16 8 chr12 92657427 92657794 -51128661 - THE1C LTR MaLR -5 370 1 4578 21 4 0 chr12 92657827 92658356 -51128099 + L1PA4 LINE L1 5624 6154 -1 2321 88 0 38 chr12 92658515 92658835 -51127620 - AluSc SINE Alu -1 308 1 193 242 0 45 chr12 92660341 92660418 -51126037 + MIR SINE MIR 38 139 -123 26 0 0 0 chr12 92661266 92661292 -51125163 + AT_rich Low_complexity Low_complexity 1 26 0 1096 146 52 9 chr12 92661596 92661809 -51124646 - L1PB2 LINE L1 -2 6149 5928 35366 84 16 34 chr12 92662356 92664666 -51121789 + L1PA7 LINE L1 8 2358 -3796 248 0 31 0 chr12 92664666 92664698 -51121757 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 35366 84 16 34 chr12 92664698 92668641 -51117814 + L1PA7 LINE L1 2358 6147 -7 1255 229 26 13 chr12 92668649 92668955 -51117500 + MLT1C LTR MaLR 158 467 0 1985 219 71 12 chr12 92668999 92669561 -51116894 - L1MC4 LINE L1 -204 7838 7244 909 198 92 8 chr12 92669562 92669861 -51116594 - L1MC4 LINE L1 -829 7064 6636 558 225 6 77 chr12 92670044 92670226 -51116229 - L1MC4 LINE L1 -1416 6626 6458 185 108 27 0 chr12 92670934 92670971 -51115484 + GA-rich Low_complexity Low_complexity 4 41 0 825 144 131 33 chr12 92671230 92671383 -51115072 - AluJo SINE Alu -18 294 127 264 30 0 0 chr12 92671825 92671858 -51114597 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 169 32 16 chr12 92672355 92672479 -51113976 + (TA)n Simple_repeat Simple_repeat 1 126 0 246 350 28 21 chr12 92672628 92672771 -51113684 + L2 LINE L2 1280 1423 -1891 1413 234 20 30 chr12 92672784 92673185 -51113270 + MLT1E2 LTR MaLR 4 400 -226 300 27 0 0 chr12 92723221 92723258 -51063197 + (TTA)n Simple_repeat Simple_repeat 1 37 0 216 0 0 0 chr12 92723715 92723739 -51062716 + (A)n Simple_repeat Simple_repeat 1 24 0 446 286 30 8 chr12 92724754 92724887 -51061568 + MER3 DNA MER1_type 16 151 -58 242 79 0 79 chr12 92724897 92724960 -51061495 - L1MA7 LINE L1 0 6291 6234 358 191 0 24 chr12 92724962 92725046 -51061409 + MER3 DNA MER1_type 128 209 0 458 299 28 64 chr12 92725372 92725623 -51060832 - L1MC4 LINE L1 -2189 5619 5378 251 344 43 32 chr12 92725887 92726073 -51060382 + MER5A DNA MER1_type 1 188 -1 254 309 55 42 chr12 92726499 92726664 -51059791 + MIR SINE MIR 46 212 -50 2059 50 8 0 chr12 92727002 92727264 -51059191 + L1PA5 LINE L1 5890 6153 -1 524 275 39 16 chr12 92727325 92727507 -51058948 - MARNA DNA Mariner -254 332 147 739 339 59 79 chr12 92727507 92728674 -51057781 + L2 LINE L2 1178 2321 -993 27 49 0 0 chr12 92728816 92728857 -51057598 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr12 92728994 92729030 -51057425 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr12 92729261 92729291 -51057164 + AT_rich Low_complexity Low_complexity 1 30 0 188 300 17 0 chr12 92729442 92729502 -51056953 + L2 LINE L2 3134 3194 -78 216 0 0 0 chr12 92729502 92729526 -51056929 + (T)n Simple_repeat Simple_repeat 1 24 0 286 349 160 0 chr12 92729648 92729823 -51056632 + MIR SINE MIR 44 246 -16 28485 32 1 0 chr12 92730634 92734854 -51051601 - L1PA4 LINE L1 -4 6151 1928 4683 55 5 0 chr12 92734852 92735447 -51051008 + L1PA4 LINE L1 1327 1924 -4222 * 453 298 68 52 chr12 92735649 92735901 -51050554 - MIR SINE MIR -6 256 1 256 140 40 0 chr12 92736776 92736826 -51049629 + MADE1 DNA Mariner 8 59 -21 201 171 0 0 chr12 92737192 92737227 -51049228 + (TA)n Simple_repeat Simple_repeat 2 36 0 305 298 225 7 chr12 92737465 92737616 -51048839 + MIR SINE MIR 1 184 -78 408 304 62 31 chr12 92737700 92737924 -51048531 - MIR SINE MIR -28 234 4 257 254 0 0 chr12 92738156 92738223 -51048232 - L1PB4 LINE L1 -1 6212 6146 1618 103 53 144 chr12 92738223 92738578 -51047877 + AluSx SINE Alu 1 326 0 8366 232 81 39 chr12 92738586 92741648 -51044807 - L1PB4 LINE L1 -111 6102 3168 370 135 0 0 chr12 92741648 92741700 -51044755 - U2 snRNA snRNA -136 52 1 8366 232 81 39 chr12 92741700 92743339 -51043116 - L1PB4 LINE L1 -3045 3168 952 275 0 29 0 chr12 92743339 92743374 -51043081 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 8366 232 81 39 chr12 92743374 92743999 -51042456 - L1PB4 LINE L1 -5261 952 354 514 345 20 37 chr12 92744107 92744403 -51042052 - L1PB4 LINE L1 -5839 365 75 2439 51 38 0 chr12 92745001 92745294 -51041161 + AluY SINE Alu 1 304 -7 294 365 125 10 chr12 92746447 92746735 -51039720 - LTR33A LTR ERVL -113 410 90 763 311 90 25 chr12 92746749 92747148 -51039307 - LTR16B LTR ERVL -5 459 35 270 408 32 0 chr12 92747524 92747681 -51038774 - MIR3 SINE MIR -10 198 37 2182 186 40 13 chr12 92747805 92748252 -51038203 + LOR1b LTR ERV1 1 459 -2 2516 179 23 7 chr12 92748255 92748697 -51037758 + LOR1b-int LTR ERV1 2 450 -7670 236 205 0 0 chr12 92748773 92748812 -51037643 + 5S rRNA rRNA 1 39 -82 6283 132 42 26 chr12 92748842 92750022 -51036433 + LOR1b-int LTR ERV1 521 1718 -6402 3642 191 34 58 chr12 92750018 92751099 -51035356 + LOR1b-int LTR ERV1 3226 4280 -2318 * 1308 138 0 14 chr12 92751099 92751309 -51035146 + AluSg/x SINE Alu 103 309 -3 21259 139 53 42 chr12 92751313 92753056 -51033399 + LOR1b-int LTR ERV1 4167 5888 -2232 2141 122 0 0 chr12 92753056 92753342 -51033113 - AluSx SINE Alu -24 288 3 21259 139 53 42 chr12 92753342 92755506 -51030949 + LOR1b-int LTR ERV1 5888 8120 0 2397 169 33 7 chr12 92755506 92755955 -51030500 + LOR1b LTR ERV1 1 461 0 1762 191 7 0 chr12 92756117 92756405 -51030050 + AluJb SINE Alu 4 293 -19 2615 30 0 3 chr12 92757173 92757475 -51028980 + AluY SINE Alu 1 301 -10 257 135 0 0 chr12 92757859 92757896 -51028559 - MSTA LTR MaLR 0 428 392 1049 297 59 23 chr12 92758703 92759094 -51027361 - MLT1I LTR MaLR -4 405 1 318 196 49 9 chr12 92759638 92759745 -51026710 + HAL1b LINE L1 1243 1348 0 1652 180 73 44 chr12 92759851 92760234 -51026221 + MSTD LTR MaLR 3 396 0 2355 244 19 2 chr12 92760236 92760768 -51025687 + MSTD-int LTR MaLR 2 542 -1193 1180 92 0 0 chr12 92760769 92760921 -51025534 + AluY SINE Alu 152 303 -8 2995 260 97 43 chr12 92760923 92761824 -51024631 + MSTD-int LTR MaLR 548 1496 -239 1239 157 160 21 chr12 92761829 92762116 -51024339 + MER44D DNA MER2_type 5 601 -8 1191 147 80 9 chr12 92762123 92762348 -51024107 + MSTD-int LTR MaLR 1489 1729 -6 2023 174 26 18 chr12 92762353 92762744 -51023711 + MSTD LTR MaLR 1 394 -2 803 121 53 0 chr12 92763319 92763451 -51023004 + MER85 DNA T2_type 1 139 0 269 243 29 14 chr12 92763707 92763777 -51022678 - L2 LINE L2 -1 3312 3242 537 186 0 0 chr12 92763777 92763863 -51022592 + MER7A DNA MER2_type 1 84 -262 225 178 0 0 chr12 92763892 92763937 -51022518 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 211 19 39 chr12 92763947 92763999 -51022456 + MSTD LTR MaLR 158 208 -188 462 143 0 0 chr12 92763999 92764076 -51022379 + (TA)n Simple_repeat Simple_repeat 1 77 0 1341 146 5 23 chr12 92764089 92764309 -51022146 + MER7A DNA MER2_type 121 336 -10 1060 298 108 65 chr12 92764310 92765345 -51021110 - L2 LINE L2 -71 3242 2148 14218 173 15 30 chr12 92765382 92768803 -51017652 - HERVH LTR ERV1 -3244 3285 590 674 109 30 0 chr12 92768785 92768886 -51017569 - HERVH LTR ERV1 -7609 104 1 * 2445 82 87 62 chr12 92768888 92769325 -51017130 - LTR7 LTR ERV1 -2 448 1 188 270 79 0 chr12 92771017 92771080 -51015375 - MIR SINE MIR -9 253 186 186 366 41 57 chr12 92771135 92771258 -51015197 + L2 LINE L2 3145 3265 -7 265 276 76 54 chr12 92771635 92771820 -51014635 + L2 LINE L2 2778 2966 -348 6709 112 25 7 chr12 92771878 92773026 -51013429 + L1MA3 LINE L1 5138 6305 0 225 154 0 0 chr12 92774586 92774625 -51011830 + T-rich Low_complexity Low_complexity 1 39 0 797 169 61 0 chr12 92775335 92775483 -51010972 + MSTB1 LTR MaLR 259 415 -17 4194 174 20 1 chr12 92775507 92776203 -51010252 + MER44D DNA MER2_type 16 596 -9 266 370 30 22 chr12 92776273 92776408 -51010047 + L2 LINE L2 3137 3272 0 968 201 49 31 chr12 92776500 92776788 -51009667 - MER33 DNA MER1_type 0 324 32 23 33 0 0 chr12 92776945 92776975 -51009480 + AT_rich Low_complexity Low_complexity 1 30 0 1012 181 39 39 chr12 92777330 92777535 -51008920 + AluJb SINE Alu 87 291 -21 234 207 0 35 chr12 92777664 92777722 -51008733 - MER81 DNA DNA -16 98 43 30 59 0 0 chr12 92777777 92777828 -51008627 + AT_rich Low_complexity Low_complexity 1 51 0 2586 90 13 24 chr12 92778187 92778566 -51007889 - THE1C LTR MaLR 0 375 1 268 207 41 25 chr12 92779292 92779413 -51007042 + GA-rich Low_complexity Low_complexity 5 127 0 517 236 24 8 chr12 92779960 92780087 -51006368 + MER105 DNA DNA 28 156 -48 1324 124 5 5 chr12 92780656 92780850 -51005605 - MER1B DNA MER1_type -2 337 144 447 174 0 0 chr12 92780850 92780919 -51005536 - MER1B DNA MER1_type -268 69 1 606 272 154 62 chr12 92781289 92781489 -51004966 + MLT1J LTR MaLR 9 189 -322 1283 207 113 26 chr12 92781489 92781831 -51004624 + MLT2D LTR ERVL 1 381 -33 563 0 15 0 chr12 92781831 92781898 -51004557 + (CA)n Simple_repeat Simple_repeat 2 69 0 1283 207 113 26 chr12 92781898 92781936 -51004519 + MLT2D LTR ERVL 381 414 0 606 272 154 62 chr12 92781936 92782158 -51004297 + MLT1J LTR MaLR 189 470 -41 280 372 45 26 chr12 92782178 92782334 -51004121 - L2 LINE L2 -535 2779 2621 3399 230 90 12 chr12 92782605 92783894 -51002561 - Charlie2a DNA MER1_type -8 2854 1466 778 253 36 69 chr12 92783907 92784267 -51002188 - L1MEc LINE L1 -5475 921 574 531 267 24 6 chr12 92784303 92784468 -51001987 - L1MEc LINE L1 -6137 259 92 628 271 57 5 chr12 92784537 92784747 -51001708 - Charlie2 DNA MER1_type -2366 496 276 344 237 158 98 chr12 92784805 92785071 -51001384 - LTR41 LTR ERVL -7 766 485 372 221 0 12 chr12 92785245 92785331 -51001124 - LTR41 LTR ERVL -672 101 17 273 171 19 114 chr12 92785389 92785494 -51000961 - Charlie2 DNA MER1_type -2582 200 106 * 1178 178 53 0 chr12 92785493 92785701 -51000754 + MSTB LTR MaLR 208 426 0 266 336 0 64 chr12 92785715 92785840 -51000615 + L2 LINE L2 2987 3103 -169 21 36 0 0 chr12 92785954 92785982 -51000473 + AT_rich Low_complexity Low_complexity 1 28 0 712 199 34 14 chr12 92786294 92786440 -51000015 - MER58B DNA MER1_type 0 341 193 591 300 56 33 chr12 92786559 92786811 -50999644 - MLT1H LTR MaLR -249 300 1 222 37 0 0 chr12 92786937 92786973 -50999482 + (TC)n Simple_repeat Simple_repeat 1 63 0 222 37 0 0 chr12 92786973 92787000 -50999455 + (TC)n Simple_repeat Simple_repeat 2 28 0 24 0 0 29 chr12 92787136 92787147 -50999308 + AT_rich Low_complexity Low_complexity 1 11 -23 1631 160 46 7 chr12 92787147 92787428 -50999027 - AluJb SINE Alu -20 292 1 24 0 0 29 chr12 92787428 92787451 -50999004 + AT_rich Low_complexity Low_complexity 11 34 0 407 301 73 34 chr12 92787474 92787680 -50998775 - MIR SINE MIR 0 262 49 251 231 10 96 chr12 92787827 92787931 -50998524 + L1MC5 LINE L1 6629 6723 -1238 * 7337 44 0 1 chr12 92787929 92788838 -50997617 - L1PA6 LINE L1 -1489 4657 3750 7045 55 8 0 chr12 92788839 92790354 -50996101 + L1PA6 LINE L1 4657 6154 0 649 209 59 121 chr12 92790354 92790587 -50995868 + L1MC5 LINE L1 6710 6914 -1047 1596 172 0 28 chr12 92790587 92790713 -50995742 + AluJb SINE Alu 1 129 -182 369 0 0 0 chr12 92790713 92790754 -50995701 + (CA)n Simple_repeat Simple_repeat 2 42 0 1596 172 0 28 chr12 92790754 92790946 -50995509 + AluJb SINE Alu 129 311 0 649 209 59 121 chr12 92790946 92791096 -50995359 + L1MC5 LINE L1 6914 7072 -889 830 235 77 54 chr12 92791151 92791543 -50994912 + L1MC5 LINE L1 7085 7485 -476 1869 212 23 10 chr12 92791543 92791935 -50994520 + L1MC1 LINE L1 21 417 -6009 431 229 0 0 chr12 92791936 92792019 -50994436 + L1MC1 LINE L1 513 595 -5831 * 3485 188 19 15 chr12 92792007 92793021 -50993434 + L1MC1 LINE L1 5122 6129 -484 552 185 28 0 chr12 92793021 92793115 -50993340 + L1MC1 LINE L1 6501 6611 -2 392 259 36 14 chr12 92793173 92793312 -50993143 + L1MC5 LINE L1 7772 7913 -48 1607 184 11 0 chr12 92793591 92793897 -50992558 + AluJo SINE Alu 4 312 0 211 365 104 0 chr12 92794042 92794138 -50992317 + L2 LINE L2 3149 3254 -18 189 0 0 0 chr12 92795797 92795818 -50990637 + (TAA)n Simple_repeat Simple_repeat 3 23 0 983 153 13 0 chr12 92795818 92795968 -50990487 - AluSg/x SINE Alu -24 288 137 34 42 0 0 chr12 92796021 92796069 -50990386 + AT_rich Low_complexity Low_complexity 1 48 0 1113 231 145 12 chr12 92796164 92796662 -50989793 + L1ME1 LINE L1 1965 2528 -4079 393 230 11 0 chr12 92796713 92796800 -50989655 - Tigger7 DNA MER2_type 0 2487 2400 * 2902 175 64 7 chr12 92796795 92797344 -50989111 - Tigger7 DNA MER2_type -151 582 3 1182 197 94 82 chr12 92797344 92797736 -50988719 + MLT1C LTR MaLR 33 352 -38 1021 204 61 55 chr12 92797736 92798065 -50988390 + L1ME1 LINE L1 2841 3171 -3255 833 240 14 0 chr12 92798060 92798277 -50988178 + L1ME1 LINE L1 4069 4288 -2138 * 1018 218 84 34 chr12 92798277 92798716 -50987739 - MLT1D LTR MaLR -1 504 1 4230 245 29 19 chr12 92798716 92800439 -50986016 + L1ME1 LINE L1 4283 6028 -418 1253 236 44 115 chr12 92800441 92801077 -50985378 + LTR38B LTR ERV1 1 591 -19 998 286 29 24 chr12 92801097 92801510 -50984945 + L1ME1 LINE L1 6027 6441 -5 532 244 113 18 chr12 92802684 92802852 -50983603 + MER101B LTR ERV1 1 184 -386 2676 184 10 6 chr12 92805023 92805507 -50980948 + MER66B LTR ERV1 1 486 0 320 376 110 42 chr12 92805752 92806416 -50980039 + L2 LINE L2 595 1303 -2011 2592 112 3 8 chr12 92807882 92808247 -50978208 + THE1B LTR MaLR 1 363 -1 392 321 100 21 chr12 92808320 92808560 -50977895 + MIR SINE MIR 4 262 0 1577 148 170 16 chr12 92808861 92809232 -50977223 + MSTA LTR MaLR 1 428 0 314 276 40 104 chr12 92809278 92809575 -50976880 - L1MEd LINE L1 -4999 1120 843 2040 146 138 5 chr12 92809910 92810288 -50976167 + MSTA LTR MaLR 1 428 0 510 146 12 0 chr12 92810290 92810372 -50976083 + MSTA-int LTR MaLR 3 85 -1495 * 1315 141 14 5 chr12 92810369 92810582 -50975873 + MSTA-int LTR MaLR 1264 1478 -173 394 261 84 65 chr12 92811140 92811355 -50975100 - MIR SINE MIR -40 222 4 342 0 0 0 chr12 92812303 92812341 -50974114 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr12 92813243 92813273 -50973182 + AT_rich Low_complexity Low_complexity 1 30 0 437 339 81 25 chr12 92813542 92813864 -50972591 + L1ME4a LINE L1 5677 6016 -105 28 48 0 0 chr12 92813933 92813975 -50972480 + AT_rich Low_complexity Low_complexity 1 42 0 1520 260 24 28 chr12 92814226 92814683 -50971772 - MLT1C LTR MaLR -4 463 9 2275 113 129 5 chr12 92814823 92815204 -50971251 + MSTA LTR MaLR 1 428 0 1032 40 0 0 chr12 92815599 92815725 -50970730 - L1PA5 LINE L1 -6 6148 6023 3224 103 13 0 chr12 92815804 92816251 -50970204 - MLT2A2 LTR ERVL 0 453 1 313 316 40 17 chr12 92816334 92816511 -50969944 + L1MEd LINE L1 13 193 -5926 1382 189 70 14 chr12 92816586 92816871 -50969584 - AluJb SINE Alu -1 311 11 587 254 209 20 chr12 92816883 92817241 -50969214 - L1MC4a LINE L1 -1639 6169 5744 456 299 112 35 chr12 92817276 92817473 -50968982 - L1MC4a LINE L1 -2130 5678 5467 302 294 9 64 chr12 92817474 92817583 -50968872 - L1MC4a LINE L1 -2410 5398 5296 2889 158 0 73 chr12 92817633 92818197 -50968258 - MER1A DNA MER1_type 0 527 5 30 27 0 0 chr12 92818951 92818988 -50967467 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 92819013 92819036 -50967419 + AT_rich Low_complexity Low_complexity 1 23 0 619 285 93 61 chr12 92819082 92819394 -50967061 - MLT1I LTR MaLR -6 403 82 516 267 113 79 chr12 92819761 92820103 -50966352 + L1M4 LINE L1 3561 3890 -2256 1980 116 14 3 chr12 92820103 92820396 -50966059 - AluSq SINE Alu -17 296 1 516 267 113 79 chr12 92820396 92820531 -50965924 + L1M4 LINE L1 3890 4019 -2127 5872 201 8 8 chr12 92820531 92822545 -50963910 + L1PA15 LINE L1 4125 6146 -19 516 267 113 79 chr12 92822545 92822842 -50963613 + L1M4 LINE L1 4019 4363 -1783 290 296 87 20 chr12 92822856 92823109 -50963346 + L1M4 LINE L1 4744 5013 -1133 21 57 0 0 chr12 92823111 92823146 -50963309 + AT_rich Low_complexity Low_complexity 1 35 0 4918 151 10 27 chr12 92823390 92824287 -50962168 - L1MB2 LINE L1 0 6171 5290 30 59 0 0 chr12 92825035 92825086 -50961369 + AT_rich Low_complexity Low_complexity 1 51 0 242 327 69 35 chr12 92825946 92826206 -50960249 + L1M4 LINE L1 3661 3929 -2217 423 325 83 32 chr12 92826401 92826678 -50959777 - ERVL LTR ERVL -2234 3530 3240 635 145 0 8 chr12 92827794 92827911 -50958544 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 188 320 74 41 chr12 92827928 92828050 -50958405 + L2 LINE L2 3177 3302 -11 233 218 18 18 chr12 92828703 92828758 -50957697 - L2 LINE L2 -4 3268 3214 442 304 24 0 chr12 92828823 92828948 -50957507 - L2 LINE L2 0 3272 3145 1863 155 34 47 chr12 92829167 92829547 -50956908 + THE1C LTR MaLR 1 375 0 267 103 0 0 chr12 92829842 92829881 -50956574 + (TC)n Simple_repeat Simple_repeat 2 40 0 360 300 52 24 chr12 92831177 92831387 -50955068 + L1MA9 LINE L1 6059 6274 -38 2279 223 4 41 chr12 92832485 92833019 -50953436 - MLT2B2 LTR ERVL 0 515 2 689 240 17 69 chr12 92833213 92833388 -50953067 + MER8 DNA MER2_type 7 172 -67 631 290 61 4 chr12 92834156 92834401 -50952054 + MIR SINE MIR 4 262 0 331 277 86 69 chr12 92835079 92835201 -50951254 + L1ME4a LINE L1 5717 5835 -286 183 42 0 0 chr12 92835201 92835225 -50951230 + (TATATG)n Simple_repeat Simple_repeat 6 29 0 331 277 86 69 chr12 92835225 92835452 -50951003 + L1ME4a LINE L1 5835 6072 -49 407 280 112 0 chr12 92836019 92836126 -50950329 + L2 LINE L2 3151 3269 -3 1262 215 92 125 chr12 92838019 92838540 -50947915 - MLT1F1 LTR MaLR 0 567 64 2068 156 20 0 chr12 92839226 92839584 -50946871 + MER47A DNA MER2_type 1 365 -1 2452 75 3 0 chr12 92839755 92840060 -50946395 + AluSg SINE Alu 3 308 -2 829 159 141 83 chr12 92840584 92840733 -50945722 + L1MA9 LINE L1 6015 6154 -158 216 111 0 0 chr12 92840733 92840769 -50945686 + (CA)n Simple_repeat Simple_repeat 1 36 0 829 159 141 83 chr12 92840769 92840895 -50945560 + L1MA9 LINE L1 6154 6306 -6 367 250 85 81 chr12 92840915 92841036 -50945419 - L1ME4a LINE L1 -157 5964 5840 2182 105 0 3 chr12 92841036 92841330 -50945125 - AluSq SINE Alu -14 299 7 367 250 85 81 chr12 92841330 92841444 -50945011 - L1ME4a LINE L1 -281 5840 5728 6246 211 13 1 chr12 92841763 92843163 -50943292 - L1PB1 LINE L1 -859 5287 3872 5337 113 13 19 chr12 92843163 92844013 -50942442 + L1PB1 LINE L1 5306 6150 -1 995 63 0 0 chr12 92845069 92845195 -50941260 + AluY SINE Alu 173 298 -13 517 253 125 50 chr12 92846452 92846812 -50939643 - L1ME4a LINE L1 -1 6120 5734 2928 111 5 0 chr12 92846820 92847245 -50939210 - L1PA14 LINE L1 -6 6155 5729 2304 225 140 38 chr12 92847780 92848320 -50938135 + L1ME1 LINE L1 5218 5877 -289 2186 75 51 3 chr12 92848320 92848613 -50937842 + AluSx SINE Alu 1 307 -5 2304 225 140 38 chr12 92848613 92848932 -50937523 + L1ME1 LINE L1 5877 6162 -4 312 411 83 13 chr12 92849044 92849504 -50936951 - L2 LINE L2 -181 3091 2595 3552 186 114 145 chr12 92849531 92849915 -50936540 - L1MD3 LINE L1 -10 7985 7591 1721 159 7 36 chr12 92849915 92850223 -50936232 - AluJb SINE Alu -1 311 13 3552 186 114 145 chr12 92850223 92850440 -50936015 - L1MD3 LINE L1 -404 7591 7369 396 263 51 17 chr12 92850440 92850558 -50935897 - MLT1F1 LTR MaLR -445 122 1 3552 186 114 145 chr12 92850558 92851390 -50935065 - L1MD3 LINE L1 -626 7369 6482 700 230 91 10 chr12 92851381 92851590 -50934865 - L1MD3 LINE L1 -1901 6094 5869 * 227 91 0 23 chr12 92851590 92851634 -50934821 + (TAA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr12 92851634 92851666 -50934789 + AT_rich Low_complexity Low_complexity 1 32 0 284 373 119 24 chr12 92851962 92852423 -50934032 - L2 LINE L2 -811 2503 1999 230 365 86 25 chr12 92852551 92852795 -50933660 - L2 LINE L2 -1310 2004 1746 403 322 43 14 chr12 92853128 92853336 -50933119 + MIR SINE MIR 35 248 -14 5843 117 6 6 chr12 92854393 92855475 -50930980 - L1PA13 LINE L1 -2 6161 5072 851 150 39 26 chr12 92855494 92855647 -50930808 + L1P LINE L1 4118 4272 -1874 * 5193 170 3 9 chr12 92855622 92856610 -50929845 - L1PA13 LINE L1 -1076 5070 4089 4560 146 83 25 chr12 92857089 92857953 -50928502 - MER49 LTR ERV1 -9 914 1 2172 115 0 3 chr12 92858236 92858531 -50927924 + AluSx SINE Alu 1 294 -18 7094 40 18 1 chr12 92858734 92859666 -50926789 + L1PA5 LINE L1 5199 6145 -9 22 0 0 0 chr12 92859666 92859688 -50926767 + AT_rich Low_complexity Low_complexity 1 22 0 402 335 98 37 chr12 92860088 92860303 -50926152 + MIR SINE MIR 9 236 -26 617 310 121 24 chr12 92860610 92860743 -50925712 + L2 LINE L2 2996 3115 -198 2043 117 40 46 chr12 92860743 92860987 -50925468 - MER7A DNA MER2_type -2692 346 104 2267 63 0 14 chr12 92860987 92861297 -50925158 + AluY SINE Alu 1 306 0 2043 117 40 46 chr12 92861297 92861401 -50925054 - MER7A DNA MER2_type -2934 104 1 617 310 121 24 chr12 92861401 92861557 -50924898 + L2 LINE L2 3115 3313 0 191 250 69 28 chr12 92862101 92862173 -50924282 + MIR3 SINE MIR 130 204 -4 23 33 0 0 chr12 92862697 92862727 -50923728 + AT_rich Low_complexity Low_complexity 1 30 0 500 257 107 56 chr12 92863138 92863526 -50922929 - MLT1G3 LTR MaLR -108 447 3 2733 241 113 54 chr12 92863653 92864879 -50921576 - L1MDa LINE L1 -4873 1667 298 1915 145 0 22 chr12 92864938 92865256 -50921199 - AluSx SINE Alu -1 311 1 210 180 0 20 chr12 92865785 92865835 -50920620 + T-rich Low_complexity Low_complexity 2 50 0 2074 122 59 31 chr12 92866949 92867303 -50919152 - THE1B LTR MaLR 0 364 1 1712 181 3 3 chr12 92868514 92868806 -50917649 - AluJb SINE Alu -2 310 19 218 397 60 26 chr12 92869459 92869610 -50916845 + L2 LINE L2 3100 3255 -17 189 0 0 0 chr12 92870007 92870028 -50916427 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1573 278 56 13 chr12 92870718 92871343 -50915112 + L1M4 LINE L1 4611 5262 -884 1603 324 36 43 chr12 92871365 92872085 -50914370 - ERVL LTR ERVL -1464 4300 3586 1363 332 107 2 chr12 92872099 92872732 -50913723 - ERVL LTR ERVL -2004 3481 2782 1708 193 205 0 chr12 92872873 92873292 -50913163 - MLT1D LTR MaLR 0 505 1 267 292 45 34 chr12 92873615 92873704 -50912751 + MIR SINE MIR 172 261 -1 315 259 237 15 chr12 92873735 92873870 -50912585 - MER5B DNA MER1_type -5 173 9 1341 83 44 31 chr12 92875409 92875637 -50910818 + L1MA5A LINE L1 6062 6292 -5 35 24 0 0 chr12 92875637 92875679 -50910776 + AT_rich Low_complexity Low_complexity 1 42 0 1280 78 0 0 chr12 92876334 92876500 -50909955 - L1PA3 LINE L1 -14 6141 5976 1843 128 29 14 chr12 92876511 92876792 -50909663 + AluJb SINE Alu 3 287 -25 374 310 115 40 chr12 92877073 92877299 -50909156 + MIR SINE MIR 20 262 0 22 56 0 0 chr12 92877519 92877555 -50908900 + AT_rich Low_complexity Low_complexity 1 36 0 493 204 11 0 chr12 92978486 92978579 -50807876 + Tigger3b DNA MER2_type 9 102 -1129 5126 151 39 9 chr12 92978582 92979507 -50806948 + Tigger3b DNA MER2_type 279 1231 0 216 111 0 0 chr12 92980107 92980143 -50806312 + (TA)n Simple_repeat Simple_repeat 2 37 0 1587 203 7 3 chr12 92983148 92983443 -50803012 + AluJo SINE Alu 1 296 -16 301 260 42 21 chr12 92983460 92983556 -50802899 - L1MC4 LINE L1 -1333 6709 6612 519 145 28 41 chr12 92983576 92984112 -50802343 + (TA)n Simple_repeat Simple_repeat 1 529 0 1645 167 33 17 chr12 92984338 92984637 -50801818 + AluJb SINE Alu 5 308 -4 2881 219 100 42 chr12 92984645 92985917 -50800538 - L1ME2 LINE L1 -9 6155 4758 2381 86 0 0 chr12 92985917 92986218 -50800237 + AluSx SINE Alu 2 302 -10 2881 219 100 42 chr12 92986218 92986665 -50799790 - L1ME2 LINE L1 -1406 4758 4338 351 0 0 0 chr12 92986940 92986979 -50799476 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 400 182 0 0 chr12 92986984 92987050 -50799405 - AluJ/FRAM SINE Alu -30 282 217 261 0 0 0 chr12 92987060 92987089 -50799366 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1834 171 4 0 chr12 92987090 92987370 -50799085 - AluJb SINE Alu -31 281 1 1265 269 62 14 chr12 92987521 92987960 -50798495 - Charlie7 DNA MER1_type -1888 724 265 262 255 56 97 chr12 92987990 92988186 -50798269 - Charlie7 DNA MER1_type -2424 188 1 183 129 0 0 chr12 92988258 92988289 -50798166 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 261 322 56 0 chr12 92989463 92989553 -50796902 - MIR SINE MIR -71 191 97 259 154 31 0 chr12 92991089 92991154 -50795301 + GA-rich Low_complexity Low_complexity 2 68 0 853 153 0 0 chr12 92991934 92992058 -50794397 - LOR1a LTR ERV1 -2 495 372 981 136 26 0 chr12 92992058 92992213 -50794242 + LOR1b-int LTR ERV1 5906 6064 -2056 615 94 0 0 chr12 92992212 92992297 -50794158 + LOR1b-int LTR ERV1 8030 8114 -6 * 254 152 152 61 chr12 92992303 92992369 -50794086 + LOR1b LTR ERV1 1 72 -389 884 172 0 0 chr12 92992370 92992515 -50793940 + AluSg/x SINE Alu 154 298 -14 1209 185 79 0 chr12 92992517 92992771 -50793684 + LOR1b LTR ERV1 58 331 -130 286 103 17 69 chr12 92992929 92993045 -50793410 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 36 0 0 chr12 92993054 92993082 -50793373 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 89 0 0 chr12 92993082 92993127 -50793328 + LTR66 LTR ERVL 394 438 -172 * 906 204 17 6 chr12 92993112 92993293 -50793162 - MLT2B1 LTR ERVL -40 480 298 857 284 41 22 chr12 92993296 92993711 -50792744 - HAL1 LINE L1 -369 2138 1716 228 121 76 0 chr12 92994146 92994212 -50792243 + (TA)n Simple_repeat Simple_repeat 2 72 0 371 276 110 16 chr12 92994759 92994886 -50791569 + L2 LINE L2 3175 3313 0 1735 157 3 63 chr12 92995065 92995384 -50791071 - AluJb SINE Alu -10 302 3 197 314 29 69 chr12 92995388 92995490 -50790965 - MIR SINE MIR -147 115 18 371 223 11 32 chr12 92996090 92996184 -50790271 + AluJ/FLAM SINE Alu 2 93 -209 347 289 46 61 chr12 92996258 92996455 -50790000 + MIR SINE MIR 20 213 -49 22 0 0 0 chr12 92996912 92996934 -50789521 + AT_rich Low_complexity Low_complexity 1 22 0 2126 129 0 0 chr12 92996973 92997267 -50789188 - AluSq SINE Alu -19 294 1 515 285 16 42 chr12 92997494 92997687 -50788768 - MIR SINE MIR -26 236 49 336 375 77 36 chr12 92997685 92998152 -50788303 - L2 LINE L2 -593 2721 2236 * 255 279 59 0 chr12 92998283 92998351 -50788104 - L2 LINE L2 0 3313 3242 360 0 0 0 chr12 92998669 92998709 -50787746 + (TA)n Simple_repeat Simple_repeat 2 41 0 304 307 23 0 chr12 92998793 92998881 -50787574 + L1MC4 LINE L1 6614 6703 -1339 240 35 0 0 chr12 92998891 92998920 -50787535 + (GA)n Simple_repeat Simple_repeat 2 30 0 2186 209 9 37 chr12 92998922 92999382 -50787073 - MLT2B2 LTR ERVL -68 447 1 450 274 26 0 chr12 92999387 92999504 -50786951 + HAL1b LINE L1 404 523 -825 1356 244 121 33 chr12 92999515 93000176 -50786279 + HAL1b LINE L1 574 1292 -56 556 148 19 0 chr12 93000181 93000289 -50786166 + (TA)n Simple_repeat Simple_repeat 1 110 0 2194 122 0 0 chr12 93000289 93000584 -50785871 - AluSx SINE Alu -17 295 1 238 323 24 12 chr12 93000847 93001014 -50785441 - L1M4 LINE L1 -2260 3886 3718 2218 119 50 8 chr12 93001517 93001877 -50784578 + THE1C LTR MaLR 1 375 0 9054 136 75 4 chr12 93001877 93003353 -50783102 + THE1C-int LTR MaLR 1 1580 0 2174 117 56 14 chr12 93003353 93003713 -50782742 + THE1C LTR MaLR 1 375 0 227 67 56 56 chr12 93003867 93003957 -50782498 + (TA)n Simple_repeat Simple_repeat 1 90 0 430 240 16 44 chr12 93003959 93004142 -50782313 + L1PB4 LINE L1 1687 1864 -4985 41020 34 18 2 chr12 93004155 93010180 -50776275 + L1PA2 LINE L1 1 6152 -3 22 0 0 0 chr12 93010180 93010202 -50776253 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 93010249 93010278 -50776177 + AT_rich Low_complexity Low_complexity 1 29 0 9850 227 66 22 chr12 93010340 93013929 -50772526 + L1PB4 LINE L1 1945 5767 -1091 1716 189 0 14 chr12 93013929 93014214 -50772241 - AluSx SINE Alu -31 281 1 9850 227 66 22 chr12 93014214 93015297 -50771158 + L1PB4 LINE L1 5767 6802 -56 938 208 0 12 chr12 93016115 93016283 -50770172 - AluJo SINE Alu 0 302 137 762 143 8 45 chr12 93016290 93016312 -50770143 - AluJo SINE Alu -181 131 110 2384 127 8 16 chr12 93016312 93016690 -50769765 - THE1C LTR MaLR 0 375 1 762 143 8 45 chr12 93016690 93016800 -50769655 - AluJo SINE Alu -202 110 4 194 276 65 57 chr12 93016804 93016927 -50769528 - L2 LINE L2 -1608 1706 1583 198 325 12 12 chr12 93017218 93017298 -50769157 + L2 LINE L2 3229 3308 -5 1104 276 84 0 chr12 93018857 93019168 -50767287 + LTR16C LTR ERVL 155 491 0 616 268 56 52 chr12 93019264 93019480 -50766975 - MIR SINE MIR -14 248 33 366 23 0 0 chr12 93019545 93019588 -50766867 + (TG)n Simple_repeat Simple_repeat 2 44 0 1066 205 5 5 chr12 93020226 93020436 -50766019 - MER2 DNA MER2_type -135 210 1 231 339 83 42 chr12 93020845 93021013 -50765442 - L2 LINE L2 0 3313 3139 189 107 0 0 chr12 93021069 93021097 -50765358 + (GA)n Simple_repeat Simple_repeat 1 28 0 25945 124 11 74 chr12 93021743 93026705 -50759750 + L1P LINE L1 13 4665 -1481 256 204 41 0 chr12 93026810 93026859 -50759596 + MIR SINE MIR 208 258 -4 27 0 0 0 chr12 93028281 93028308 -50758147 + AT_rich Low_complexity Low_complexity 1 27 0 598 285 41 99 chr12 93029023 93029125 -50757330 + MLT1H LTR MaLR 1 107 -442 453 277 0 9 chr12 93029125 93029237 -50757218 - MER81 DNA DNA -2 112 2 598 285 41 99 chr12 93029237 93029600 -50756855 + MLT1H LTR MaLR 107 549 0 249 303 98 23 chr12 93029614 93029746 -50756709 - MIR SINE MIR -33 229 88 239 327 62 10 chr12 93030071 93030279 -50756176 - L1MC/D LINE L1 -1954 5854 5636 202 304 0 0 chr12 93030792 93030848 -50755607 + GA-rich Low_complexity Low_complexity 1 56 0 262 383 78 0 chr12 93030875 93031016 -50755439 - L2 LINE L2 0 3272 3121 1942 241 54 36 chr12 93031203 93031654 -50754801 - L1ME3A LINE L1 -42 6128 5658 1801 101 40 4 chr12 93031654 93031952 -50754503 - AluSq SINE Alu 0 340 34 1942 241 54 36 chr12 93031952 93032083 -50754372 - L1ME3A LINE L1 -512 5658 5531 410 339 92 0 chr12 93032166 93032296 -50754159 - MER115 DNA AcHobo -324 369 228 482 266 103 9 chr12 93032447 93032680 -50753775 - L1ME3A LINE L1 -619 5545 5291 524 271 8 23 chr12 93032680 93032809 -50753646 - MIR SINE MIR -117 145 19 524 306 119 14 chr12 93033049 93033268 -50753187 - MIR SINE MIR -1 261 20 1529 204 37 73 chr12 93033819 93034338 -50752117 - MLT1D LTR MaLR -2 503 4 293 330 50 0 chr12 93035013 93035113 -50751342 - L2 LINE L2 -5 3308 3204 277 254 89 94 chr12 93035149 93035268 -50751187 - MLT1K LTR MaLR -2 586 468 1384 279 91 69 chr12 93035268 93035328 -50751127 - MLT2F LTR ERVL 0 663 606 243 0 0 0 chr12 93035328 93035355 -50751100 + (CA)n Simple_repeat Simple_repeat 1 27 0 1384 279 91 69 chr12 93035355 93035492 -50750963 - MLT2F LTR ERVL -57 606 473 396 0 0 0 chr12 93035492 93035536 -50750919 + (TA)n Simple_repeat Simple_repeat 2 45 0 1384 279 91 69 chr12 93035536 93035986 -50750469 - MLT2F LTR ERVL -190 473 1 277 254 89 94 chr12 93035986 93036090 -50750365 - MLT1K LTR MaLR -120 468 364 308 364 9 9 chr12 93036183 93036293 -50750162 - MLT1K LTR MaLR -410 178 69 301 238 98 42 chr12 93036422 93036565 -50749890 + MIR SINE MIR 11 161 -101 315 0 0 0 chr12 93036914 93036949 -50749506 + (T)n Simple_repeat Simple_repeat 1 35 0 355 44 0 0 chr12 93036974 93037019 -50749436 - MADE1 DNA Mariner -35 45 1 250 307 148 52 chr12 93037028 93037474 -50748981 - L2 LINE L2 -521 2793 2305 24 53 0 0 chr12 93037801 93037839 -50748616 + AT_rich Low_complexity Low_complexity 1 38 0 310 270 68 74 chr12 93038617 93038765 -50747690 - MIR SINE MIR -30 232 86 309 284 75 64 chr12 93039038 93039243 -50747212 + MIR3 SINE MIR 3 205 -57 1719 211 37 60 chr12 93039360 93039877 -50746578 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr12 93040375 93040396 -50746059 + AT_rich Low_complexity Low_complexity 1 21 0 5246 107 13 14 chr12 93040397 93041193 -50745262 - L1PA10 LINE L1 -3 6165 5371 244 361 17 17 chr12 93041271 93041390 -50745065 - L3 LINE CR1 -475 1102 984 283 340 109 37 chr12 93042430 93042575 -50743880 + L2 LINE L2 1862 1995 -1319 1763 175 0 29 chr12 93042575 93042883 -50743572 - AluJb SINE Alu -13 299 1 283 340 109 37 chr12 93042883 93043114 -50743341 + L2 LINE L2 1995 2265 -1049 302 258 120 8 chr12 93044167 93044318 -50742137 - MIR SINE MIR -34 228 32 1507 180 93 42 chr12 93044400 93044756 -50741699 - MLT1A2 LTR MaLR 0 374 1 1436 93 28 0 chr12 93045758 93045972 -50740483 - L1MA2 LINE L1 -9 6295 6076 184 413 18 0 chr12 93046153 93046262 -50740193 + L2 LINE L2 2948 3058 -214 3006 133 8 2 chr12 93046761 93047243 -50739212 - MER31A LTR ERV1 0 485 1 225 94 0 0 chr12 93047855 93047887 -50738568 + (ATGGTG)n Simple_repeat Simple_repeat 6 37 0 2168 98 0 0 chr12 93048078 93048354 -50738101 + AluSx SINE Alu 1 276 -36 222 118 0 0 chr12 93048388 93048422 -50738033 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 315 268 191 6 chr12 93049020 93049177 -50737278 - L1ME4a LINE L1 -1 6120 5935 235 276 23 0 chr12 93049194 93049281 -50737174 + L1ME LINE L1 5830 5918 -203 1806 187 0 10 chr12 93049660 93049970 -50736485 + AluJb SINE Alu 1 307 -5 492 157 0 0 chr12 93050071 93050154 -50736301 + L1PA16 LINE L1 4493 4575 -1571 * 3214 151 4 0 chr12 93050151 93050655 -50735800 + L1PA16 LINE L1 5634 6139 -27 357 145 0 0 chr12 93050656 93050718 -50735737 + (TA)n Simple_repeat Simple_repeat 2 63 0 319 326 90 39 chr12 93050738 93050916 -50735539 + MER5A DNA MER1_type 3 189 0 238 354 102 53 chr12 93051752 93052037 -50734418 + MLT1K LTR MaLR 141 439 -149 324 299 150 0 chr12 93052171 93052298 -50734157 - MIR SINE MIR -109 153 8 715 288 39 55 chr12 93053340 93053829 -50732626 - L1ME4a LINE L1 -212 5950 5470 1838 146 14 7 chr12 93053940 93054235 -50732220 - AluSx SINE Alu -15 297 1 389 361 36 0 chr12 93054566 93054732 -50731723 - L1ME LINE L1 -389 5781 5610 355 324 10 10 chr12 93055750 93055852 -50730603 + L2 LINE L2 3168 3269 -3 226 241 0 0 chr12 93056080 93056138 -50730317 + (TA)n Simple_repeat Simple_repeat 2 59 0 367 288 109 33 chr12 93056179 93056453 -50730002 - L1MC4a LINE L1 -1922 5886 5592 290 239 56 21 chr12 93056859 93057001 -50729454 - L1ME4a LINE L1 -1 6120 5974 621 326 47 5 chr12 93057291 93057506 -50728949 - MIR SINE MIR -19 243 20 1920 134 10 0 chr12 93057851 93058141 -50728314 + AluSx SINE Alu 2 294 -18 2119 181 57 61 chr12 93058226 93058767 -50727688 - L1MB5 LINE L1 -10 6164 5626 345 274 73 0 chr12 93058963 93059087 -50727368 + MIR SINE MIR 91 223 -39 228 122 0 0 chr12 93059722 93059763 -50726692 + (TC)n Simple_repeat Simple_repeat 2 42 0 261 291 43 47 chr12 93060063 93060224 -50726231 - MIR SINE MIR -63 145 3 262 366 114 11 chr12 93060342 93060517 -50725938 - L3 LINE CR1 -11 1566 1374 605 285 184 31 chr12 93060708 93061153 -50725302 - L3 LINE CR1 -631 946 434 688 281 70 36 chr12 93062123 93062425 -50724030 - L2 LINE L2 0 3313 3002 219 290 0 0 chr12 93063117 93063179 -50723276 - MIR SINE MIR -26 236 175 581 323 52 49 chr12 93063198 93063542 -50722913 + L2 LINE L2 2927 3271 -1 1170 256 165 23 chr12 93063588 93064030 -50722425 + MLT1D LTR MaLR 1 505 0 298 219 27 0 chr12 93064115 93064188 -50722267 + MER103 DNA DNA 43 117 -49 252 283 10 61 chr12 93064799 93064898 -50721557 - MIR3 SINE MIR -37 171 78 350 206 0 14 chr12 93065589 93065662 -50720793 - LTR40b LTR ERVL -7 455 384 214 281 31 0 chr12 93065662 93065726 -50720729 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2127 155 17 8 chr12 93066037 93066399 -50720056 + MLT1A1 LTR MaLR 1 365 0 267 103 0 0 chr12 93066742 93066781 -50719674 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 * 517 117 62 14 chr12 93066777 93066922 -50719533 + CT-rich Low_complexity Low_complexity 4 155 0 22 35 0 0 chr12 93067001 93067030 -50719425 + AT_rich Low_complexity Low_complexity 1 29 0 864 143 60 22 chr12 93067106 93067288 -50719167 + MER53 DNA DNA 1 189 0 262 262 107 12 chr12 93067328 93067412 -50719043 - L2 LINE L2 -231 3041 2950 291 319 34 0 chr12 93067532 93067651 -50718804 + MIR SINE MIR 21 143 -65 412 299 52 32 chr12 93067802 93067956 -50718499 + MIR SINE MIR 29 185 -77 21 36 0 0 chr12 93070123 93070151 -50716304 + AT_rich Low_complexity Low_complexity 1 28 0 241 331 99 0 chr12 93070217 93070338 -50716117 + L2 LINE L2 3164 3296 -17 232 186 0 23 chr12 93070478 93070521 -50715934 + MER20B DNA MER1_type 115 156 -627 230 338 15 23 chr12 93070624 93070757 -50715698 + L1ME LINE L1 5530 5661 -460 1969 130 47 7 chr12 93071168 93071468 -50714987 - AluSx SINE Alu 0 312 1 621 296 63 50 chr12 93071695 93072157 -50714298 + L1ME LINE L1 5255 5722 -448 629 259 53 21 chr12 93073310 93073499 -50712956 - MER63A DNA MER1_type 0 210 16 264 30 0 0 chr12 93073777 93073810 -50712645 + (CA)n Simple_repeat Simple_repeat 2 34 0 208 147 0 0 chr12 93074844 93074878 -50711577 + (CA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr12 93076227 93076250 -50710205 + (T)n Simple_repeat Simple_repeat 1 23 0 503 269 162 54 chr12 93077946 93078280 -50708175 + MLT1J LTR MaLR 107 476 -35 482 296 31 58 chr12 93078438 93078698 -50707757 - MLT1J LTR MaLR -95 416 164 331 382 63 1 chr12 93078781 93079019 -50707436 + L2 LINE L2 2763 3014 -258 2272 88 3 23 chr12 93080547 93080855 -50705600 + AluSq SINE Alu 1 302 -11 186 71 0 0 chr12 93082207 93082235 -50704220 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 2243 82 0 0 chr12 93082235 93082505 -50703950 - AluSg SINE Alu -34 276 7 192 122 78 22 chr12 93082604 93082694 -50703761 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 407 138 28 44 chr12 93082705 93082886 -50703569 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 259 209 45 34 chr12 93082915 93083092 -50703363 + (TA)n Simple_repeat Simple_repeat 2 180 0 490 304 111 9 chr12 93083133 93083350 -50703105 - MIR SINE MIR -12 250 12 1197 261 166 33 chr12 93083950 93084422 -50702033 + MLT1G1 LTR MaLR 18 553 -42 333 68 0 0 chr12 93084546 93084590 -50701865 + (TA)n Simple_repeat Simple_repeat 2 45 0 1331 92 56 0 chr12 93084842 93085037 -50701418 - L1PA10 LINE L1 -11 6157 5952 24 67 0 0 chr12 93085233 93085278 -50701177 + AT_rich Low_complexity Low_complexity 1 45 0 204 125 0 0 chr12 93085359 93085391 -50701064 + (TA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr12 93086137 93086159 -50700296 + AT_rich Low_complexity Low_complexity 1 22 0 355 218 21 145 chr12 93086596 93086789 -50699666 + MER31-int LTR ERV1 3928 4055 -881 671 162 285 0 chr12 93087272 93087451 -50699004 + LTR37B LTR ERV1 239 468 0 198 71 0 0 chr12 93087636 93087664 -50698791 + (CA)n Simple_repeat Simple_repeat 1 28 0 540 326 122 33 chr12 93087704 93088390 -50698065 + L2 LINE L2 2558 3289 -24 216 0 0 0 chr12 93088502 93088526 -50697929 + (A)n Simple_repeat Simple_repeat 1 24 0 306 254 42 34 chr12 93088840 93088958 -50697497 + Charlie8 DNA MER1_type 11 129 -2288 225 231 39 19 chr12 93089277 93089329 -50697126 - L3 LINE CR1 -23 1554 1502 1502 203 10 14 chr12 93089360 93089655 -50696800 - AluJb SINE Alu -18 294 1 326 268 188 14 chr12 93090169 93090307 -50696148 + MER5A DNA MER1_type 26 187 -2 748 266 24 24 chr12 93090675 93090923 -50695532 - MIR SINE MIR -1 261 14 265 266 86 55 chr12 93092178 93092306 -50694149 + MLT1J1 LTR MaLR 5 137 -273 1812 205 30 96 chr12 93092316 93092857 -50693598 + MLT1D LTR MaLR 1 505 0 315 214 67 11 chr12 93093004 93093093 -50693362 + MLT1I LTR MaLR 314 407 -2 823 314 71 41 chr12 93093094 93093632 -50692823 - L2 LINE L2 -560 2754 2201 480 254 48 16 chr12 93093631 93093757 -50692698 - L2 LINE L2 0 3313 3184 * 363 315 35 7 chr12 93093960 93094103 -50692352 - L2 LINE L2 -1230 2084 1938 901 261 55 26 chr12 93094242 93094514 -50691941 - MLT1F1 LTR MaLR 0 567 288 2913 132 4 2 chr12 93094634 93095090 -50691365 + L1PA15 LINE L1 5709 6165 0 42 71 0 0 chr12 93095330 93095414 -50691041 + AT_rich Low_complexity Low_complexity 1 84 0 228 232 0 18 chr12 93095580 93095636 -50690819 - MER103 DNA DNA -53 113 59 1116 329 56 7 chr12 93096550 93096979 -50689476 + MLT1K LTR MaLR 16 465 -123 2386 93 3 0 chr12 93096989 93097289 -50689166 - AluSp SINE Alu -12 301 1 359 315 48 48 chr12 93097566 93097821 -50688634 + L1MC4a LINE L1 4613 4867 -1279 1661 209 88 51 chr12 93097821 93098308 -50688147 - MLT1D LTR MaLR 0 505 1 359 315 48 48 chr12 93098308 93098569 -50687886 + L1MC4a LINE L1 4866 5129 -1017 245 200 0 17 chr12 93098601 93098661 -50687794 + L1MC4 LINE L1 6658 6716 -1326 252 212 0 0 chr12 93098664 93098730 -50687725 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 1953 256 24 14 chr12 93098832 93099097 -50687358 + L1MC4a LINE L1 5317 5578 -2230 3554 158 10 8 chr12 93099097 93099698 -50686757 + MER7C DNA MER2_type 1 602 0 1953 256 24 14 chr12 93099698 93100011 -50686444 + L1MC4a LINE L1 5578 5901 -1907 775 300 126 23 chr12 93100435 93100825 -50685630 + L1MC4a LINE L1 6476 6905 -903 1140 224 53 102 chr12 93101003 93101699 -50684756 + L1MC5 LINE L1 6883 7544 -417 416 101 101 0 chr12 93101702 93101771 -50684684 + L1MC5 LINE L1 7018 7093 -868 324 300 129 24 chr12 93102031 93102201 -50684254 - MIR SINE MIR 0 262 75 45 55 0 0 chr12 93103190 93103263 -50683192 + AT_rich Low_complexity Low_complexity 1 73 0 907 233 29 0 chr12 93103788 93103994 -50682461 + L1PA16 LINE L1 5939 6150 -16 651 182 0 0 chr12 93104545 93104657 -50681798 + MER33 DNA MER1_type 1 101 -99 1942 170 53 33 chr12 93104657 93105192 -50681263 - MLT2A2 LTR ERVL 0 554 1 696 191 67 0 chr12 93105192 93105398 -50681057 + MER33 DNA MER1_type 136 355 -8 911 136 8 0 chr12 93105513 93105645 -50680810 - AluSg/x SINE Alu -23 289 157 310 280 33 63 chr12 93105769 93106043 -50680412 + MLT1J2 LTR MaLR 102 363 -46 431 323 77 13 chr12 93106518 93107206 -50679249 + L1ME3A LINE L1 2266 2997 -3149 1731 146 76 34 chr12 93107216 93107573 -50678882 + THE1C LTR MaLR 1 372 -3 354 264 36 155 chr12 93107653 93107930 -50678525 - MLT1I LTR MaLR -21 388 145 306 308 19 0 chr12 93109186 93109293 -50677162 - MLT1I LTR MaLR -26 383 275 268 315 0 22 chr12 93109412 93109501 -50676954 - MLT1I LTR MaLR -361 188 102 957 298 103 38 chr12 93109571 93112130 -50674325 + L1ME3A LINE L1 3067 5884 -286 2230 86 3 13 chr12 93112142 93112456 -50673999 + AluY SINE Alu 1 311 0 243 179 0 0 chr12 93113418 93113485 -50672970 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 35 0 0 chr12 93115381 93115410 -50671045 + AT_rich Low_complexity Low_complexity 1 29 0 311 332 183 8 chr12 93117124 93117485 -50668970 - MLT1K LTR MaLR -17 571 148 238 203 17 51 chr12 93117523 93117582 -50668873 - MLT1K LTR MaLR -385 203 147 370 339 92 35 chr12 93117781 93118008 -50668447 - MIR SINE MIR -18 244 5 317 341 70 25 chr12 93118161 93118475 -50667980 - L2 LINE L2 -1498 1816 1489 2196 174 99 28 chr12 93118506 93119129 -50667326 + MER39 LTR ERV1 1 707 0 29 0 0 0 chr12 93119903 93119932 -50666523 + AT_rich Low_complexity Low_complexity 1 29 0 760 249 49 0 chr12 93120036 93120221 -50666234 + MIR SINE MIR 4 197 -65 543 289 98 40 chr12 93120311 93120536 -50665919 - MIR SINE MIR -12 250 13 3939 145 11 59 chr12 93121331 93122078 -50664377 + MER50 LTR ERV1 1 711 -23 229 340 11 11 chr12 93122100 93122194 -50664261 - L2 LINE L2 -345 2968 2875 204 400 55 9 chr12 93122220 93122330 -50664125 + L2 LINE L2 3121 3235 -37 526 303 66 5 chr12 93123603 93123814 -50662641 + MIR SINE MIR 28 251 -11 617 289 44 6 chr12 93124459 93124639 -50661816 + MIR SINE MIR 18 204 -58 324 0 0 0 chr12 93124806 93124842 -50661613 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6574 60 11 0 chr12 93124842 93126106 -50660349 - L1PA6 LINE L1 -11 6143 4850 509 90 26 0 chr12 93126166 93126244 -50660211 + MADE1 DNA Mariner 1 80 0 283 223 135 19 chr12 93126458 93126582 -50659873 + MIR SINE MIR 62 197 -63 189 200 0 0 chr12 93129134 93129169 -50657286 + L2 LINE L2 3265 3299 -14 826 222 72 19 chr12 93129904 93130111 -50656344 - MER58A DNA MER1_type 0 224 7 1543 196 0 0 chr12 93130968 93131223 -50655232 - AluJb SINE Alu -23 289 35 192 40 0 0 chr12 93131504 93131529 -50654926 + (GA)n Simple_repeat Simple_repeat 1 25 0 267 328 137 54 chr12 93131709 93131913 -50654542 + L2 LINE L2 3051 3271 -1 185 343 64 14 chr12 93131901 93132041 -50654414 - MIR SINE MIR -96 166 20 * 215 328 80 8 chr12 93132066 93132191 -50654264 + L2 LINE L2 2244 2377 -937 1163 167 17 104 chr12 93132376 93132730 -50653725 - MER33 DNA MER1_type -1 323 1 211 345 44 26 chr12 93133626 93133739 -50652716 - MIR3 SINE MIR -54 154 40 1406 84 5 0 chr12 93133746 93133937 -50652518 - L1PB1 LINE L1 -3 6148 5957 14010 31 0 0 chr12 93134146 93135820 -50650635 - L1P LINE L1 -1163 4983 3310 3895 9 5 0 chr12 93135820 93136300 -50650155 + L1PA3 LINE L1 5697 6180 0 252 0 0 0 chr12 93136603 93136631 -50649824 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 56 0 0 chr12 93136670 93136706 -50649749 + AT_rich Low_complexity Low_complexity 1 36 0 237 339 165 0 chr12 93136755 93136882 -50649573 + MER102a DNA MER1_type 149 296 -34 838 307 61 46 chr12 93137527 93138048 -50648407 + L1MC/D LINE L1 5264 5792 -370 402 21 0 0 chr12 93138156 93138203 -50648252 + (TA)n Simple_repeat Simple_repeat 1 47 0 206 316 122 0 chr12 93138883 93138981 -50647474 + MIR SINE MIR 82 191 -71 402 238 67 105 chr12 93139609 93139819 -50646636 - L2 LINE L2 0 3313 3112 199 344 16 48 chr12 93142184 93142199 -50644256 + MER5A DNA MER1_type 4 14 -175 345 328 17 17 chr12 93142199 93142315 -50644140 - MER5A DNA MER1_type -3 186 71 203 116 70 23 chr12 93142316 93142359 -50644096 + A-rich Low_complexity Low_complexity 1 45 0 263 294 22 11 chr12 93143420 93143512 -50642943 - MER5A DNA MER1_type 0 189 97 503 300 128 58 chr12 93145346 93145743 -50640712 - L1ME LINE L1 -344 5777 5353 237 277 107 15 chr12 93145816 93145941 -50640514 + MIR SINE MIR 16 150 -81 329 325 94 16 chr12 93146789 93146980 -50639475 - L2 LINE L2 -2 3311 3106 1933 203 0 16 chr12 93147147 93147516 -50638939 + MLT1A1 LTR MaLR 3 365 0 452 299 103 45 chr12 93147516 93147740 -50638715 - L2 LINE L2 -254 3059 2823 * 1077 296 86 53 chr12 93147729 93148394 -50638061 - L2 LINE L2 -613 2701 2015 342 0 0 0 chr12 93148595 93148633 -50637822 + (TG)n Simple_repeat Simple_repeat 2 39 0 730 292 15 53 chr12 93148669 93148933 -50637522 + MLT1K LTR MaLR 321 574 -14 709 356 14 0 chr12 93148946 93149241 -50637214 - L2 LINE L2 -1305 2009 1711 239 343 102 57 chr12 93149716 93149981 -50636474 - L2 LINE L2 -11 3261 2985 214 228 70 0 chr12 93150039 93150096 -50636359 + MIR SINE MIR 197 257 -5 1816 197 17 11 chr12 93150254 93150615 -50635840 - MLT1B LTR MaLR 0 390 28 256 209 15 60 chr12 93150630 93150697 -50635758 + MIR SINE MIR 85 148 -114 471 281 31 67 chr12 93151099 93151445 -50635010 - MLT1I LTR MaLR -2 547 68 211 139 47 0 chr12 93152056 93152099 -50634356 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 483 294 78 37 chr12 93152266 93152511 -50633944 + MIR SINE MIR 8 262 0 1519 147 3 123 chr12 93153980 93154320 -50632135 + AluJb SINE Alu 2 300 -12 2788 245 62 15 chr12 93154326 93155133 -50631322 - L1ME1 LINE L1 -5 6230 5386 51 31 0 0 chr12 93155133 93155198 -50631257 + AT_rich Low_complexity Low_complexity 1 65 0 2780 139 2 9 chr12 93155201 93155640 -50630815 - L1PA15 LINE L1 -21 6144 5709 2588 242 34 22 chr12 93155641 93157105 -50629350 - L1ME1 LINE L1 -816 5399 3861 872 234 0 0 chr12 93157115 93157290 -50629165 - FAM SINE Alu 0 175 1 595 242 0 0 chr12 93157316 93157436 -50629019 - FAM SINE Alu -65 120 1 2864 249 43 25 chr12 93157446 93158576 -50627879 - L1ME1 LINE L1 -2367 3848 2698 512 318 30 55 chr12 93158579 93158816 -50627639 - L1ME1 LINE L1 -4498 1717 1494 471 312 101 48 chr12 93158817 93159214 -50627241 - L1ME1 LINE L1 -4843 1553 1136 14305 195 24 28 chr12 93159465 93160500 -50625955 + L1MA4A LINE L1 737 1775 -5230 2467 86 0 10 chr12 93160500 93160814 -50625641 + AluY SINE Alu 1 311 0 14305 195 24 28 chr12 93160814 93162460 -50623995 + L1MA4A LINE L1 1775 3427 -3578 1454 53 0 5 chr12 93162460 93162648 -50623807 + L1PA5 LINE L1 5968 6154 0 14305 195 24 28 chr12 93162648 93166190 -50620265 + L1MA4A LINE L1 3427 6997 -8 1706 296 39 39 chr12 93166196 93167051 -50619404 - L1ME1 LINE L1 -5457 939 85 2539 213 30 6 chr12 93167051 93167557 -50618898 + MER74A LTR ERVL 35 552 -6 2173 106 0 3 chr12 93167558 93167841 -50618614 + AluSx SINE Alu 1 282 -30 227 242 76 15 chr12 93170227 93170293 -50616162 + L2 LINE L2 3201 3270 -2 271 296 15 44 chr12 93170324 93170459 -50615996 + MIR SINE MIR 75 205 -57 1951 110 34 3 chr12 93171162 93171454 -50615001 + AluSq SINE Alu 1 301 -12 351 316 20 116 chr12 93171682 93171983 -50614472 + L2 LINE L2 2978 3249 -23 310 278 30 45 chr12 93174159 93174292 -50612163 - L1ME LINE L1 -348 5773 5643 231 36 0 0 chr12 93174528 93174556 -50611899 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 279 93 0 0 chr12 93174555 93174598 -50611857 + (TG)n Simple_repeat Simple_repeat 2 44 0 592 198 0 0 chr12 93175081 93175197 -50611258 - L1MB5 LINE L1 -8 6166 6051 268 192 0 19 chr12 93175219 93175271 -50611184 + MER75 DNA T2_type 1 51 -463 1335 199 22 0 chr12 93175294 93175565 -50610890 - L1MB5 LINE L1 -155 6019 5743 1027 215 76 21 chr12 93175902 93176333 -50610122 + MLT1D LTR MaLR 1 501 -4 213 192 26 39 chr12 93177492 93177570 -50608885 + (TATAA)n Simple_repeat Simple_repeat 1 77 0 389 338 45 13 chr12 93178278 93178432 -50608023 - MIR3 SINE MIR -21 187 29 401 286 48 14 chr12 93179083 93179230 -50607225 + MIR SINE MIR 93 244 -18 199 320 13 53 chr12 93180428 93180503 -50605952 + MER5B DNA MER1_type 77 148 -30 440 236 222 38 chr12 93181134 93181346 -50605109 + L2 LINE L2 2161 2411 -903 477 266 58 7 chr12 93181369 93181508 -50604947 + L2 LINE L2 2550 2695 -619 2294 97 3 25 chr12 93182263 93182583 -50603872 - AluSp SINE Alu 0 313 1 723 315 85 53 chr12 93183116 93183525 -50602930 - L2 LINE L2 -876 2438 2001 1975 107 37 4 chr12 93183525 93183795 -50602660 + AluSg SINE Alu 1 279 -31 723 315 85 53 chr12 93183795 93184011 -50602444 - L2 LINE L2 -1313 2001 1793 613 191 9 0 chr12 93184150 93184260 -50602195 - FRAM SINE Alu -13 163 53 2304 244 108 2 chr12 93185119 93186073 -50600382 - L1ME3 LINE L1 -13 6149 5039 21 0 0 0 chr12 93186704 93186725 -50599730 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr12 93186781 93186823 -50599632 + AT_rich Low_complexity Low_complexity 1 42 0 2748 3 0 0 chr12 93186923 93187243 -50599212 - AluYa5 SINE Alu 0 320 1 281 303 26 0 chr12 93187544 93187620 -50598835 + MIR SINE MIR 5 82 -180 264 77 0 0 chr12 93187637 93187676 -50598779 + (CA)n Simple_repeat Simple_repeat 1 39 0 8642 116 9 8 chr12 93187685 93188970 -50597485 + HSMAR1 DNA Mariner 1 1286 -1 243 217 76 65 chr12 93189002 93189094 -50597361 - MIR SINE MIR -113 149 57 2225 75 39 0 chr12 93189134 93189416 -50597039 - AluSp SINE Alu -20 293 1 1194 160 84 12 chr12 93189427 93189677 -50596778 - L1MD3 LINE L1 0 7995 7728 312 27 0 0 chr12 93190306 93190343 -50596112 + (CA)n Simple_repeat Simple_repeat 2 38 0 427 326 25 6 chr12 93190344 93190529 -50595926 - MIR SINE MIR -69 139 6 2160 315 72 14 chr12 93191334 93192054 -50594401 + L2 LINE L2 2034 2830 -483 2348 173 26 2 chr12 93192054 93192471 -50593984 - MSTA LTR MaLR 0 428 2 2160 315 72 14 chr12 93192471 93192721 -50593734 + L2 LINE L2 2830 3064 -249 207 100 0 0 chr12 93192764 93192794 -50593661 + (TCC)n Simple_repeat Simple_repeat 3 32 0 207 100 0 0 chr12 93194205 93194235 -50592220 + (TCC)n Simple_repeat Simple_repeat 3 32 0 381 313 94 25 chr12 93194417 93194577 -50591878 + MIR SINE MIR 6 176 -86 213 338 95 7 chr12 93195213 93195361 -50591094 + MIR SINE MIR 98 258 -4 285 214 0 0 chr12 93195521 93195577 -50590878 + Charlie5 DNA MER1_type 8 63 -2549 21 0 0 0 chr12 93195598 93195619 -50590836 + AT_rich Low_complexity Low_complexity 1 21 0 996 175 118 0 chr12 93195631 93195894 -50590561 + Charlie5 DNA MER1_type 2234 2527 -85 242 341 88 49 chr12 93196554 93196801 -50589654 + MIR SINE MIR 3 258 -4 1078 285 40 94 chr12 93196936 93197400 -50589055 - MLT1H LTR MaLR -8 541 112 3089 69 18 21 chr12 93197400 93197837 -50588618 - L1PA10 LINE L1 -3 6165 5730 1078 285 40 94 chr12 93197837 93197944 -50588511 - MLT1H LTR MaLR -437 112 1 257 400 45 0 chr12 93198636 93198746 -50587709 - L2 LINE L2 -3 3269 3155 351 0 0 0 chr12 93198945 93198984 -50587471 + (CA)n Simple_repeat Simple_repeat 2 40 0 441 0 0 0 chr12 93199798 93199847 -50586608 + (CA)n Simple_repeat Simple_repeat 1 49 0 1676 142 58 71 chr12 93200067 93200372 -50586083 + THE1C LTR MaLR 1 302 -73 1965 173 7 0 chr12 93200372 93200679 -50585776 - AluSx SINE Alu -1 311 3 1676 142 58 71 chr12 93200679 93200753 -50585702 + THE1C LTR MaLR 302 375 0 841 258 85 73 chr12 93202042 93202194 -50584261 + LTR16A1 LTR ERVL 54 203 -254 2124 128 19 27 chr12 93202194 93202569 -50583886 - THE1C LTR MaLR 0 375 4 841 258 85 73 chr12 93202569 93202815 -50583640 + LTR16A1 LTR ERVL 203 457 0 632 288 35 47 chr12 93203087 93203344 -50583111 + MIR SINE MIR 3 256 -6 379 274 137 26 chr12 93203691 93203844 -50582611 + Charlie8 DNA MER1_type 96 265 -2152 465 342 39 31 chr12 93205768 93206025 -50580430 - MIR SINE MIR -1 261 3 206 189 0 0 chr12 93206105 93206142 -50580313 - MIR SINE MIR -6 256 220 218 200 91 0 chr12 93206184 93206239 -50580216 + MIR SINE MIR 118 177 -85 189 171 0 0 chr12 93206578 93206613 -50579842 + GA-rich Low_complexity Low_complexity 2 36 0 302 301 142 34 chr12 93206641 93206880 -50579575 - L2 LINE L2 -653 2661 2397 496 264 44 19 chr12 93206893 93207052 -50579403 + MIR SINE MIR 83 245 -17 1707 165 10 20 chr12 93208070 93208373 -50578082 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr12 93209864 93209885 -50576570 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 93210276 93210304 -50576151 + AT_rich Low_complexity Low_complexity 1 28 0 349 250 55 49 chr12 93210905 93211078 -50575377 + L1MC4a LINE L1 5681 5851 -329 285 75 0 0 chr12 93211193 93211233 -50575222 + (TG)n Simple_repeat Simple_repeat 1 40 0 1336 334 94 31 chr12 93211906 93213121 -50573334 - L2 LINE L2 0 3313 2019 477 229 0 0 chr12 93213494 93213603 -50572852 - AluSg/x SINE Alu -9 301 193 2326 106 0 10 chr12 93215265 93215576 -50570879 + AluSx SINE Alu 1 308 -4 509 282 30 0 chr12 93215752 93215883 -50570572 + MIR SINE MIR 58 192 -70 1762 181 0 13 chr12 93216532 93216847 -50569608 + AluJo SINE Alu 1 311 -1 226 284 37 18 chr12 93217438 93217547 -50568908 + L1ME LINE L1 4903 5013 -1133 318 266 89 19 chr12 93217620 93217778 -50568677 + L1ME LINE L1 5106 5274 -872 21 0 0 0 chr12 93217916 93217937 -50568518 + AT_rich Low_complexity Low_complexity 1 21 0 329 278 83 24 chr12 93217954 93218123 -50568332 + L1ME LINE L1 5501 5679 -442 1183 251 150 20 chr12 93218201 93218648 -50567807 - MLT1J LTR MaLR -6 505 1 260 218 115 11 chr12 93219488 93219575 -50566880 - LTR67 LTR ERVL -30 527 432 2193 64 0 4 chr12 93220117 93220397 -50566058 + AluY SINE Alu 1 279 -32 1051 308 77 26 chr12 93220444 93221249 -50565206 + L1ME2 LINE L1 407 1252 -5144 836 263 59 3 chr12 93221261 93221565 -50564890 + L1ME2 LINE L1 4335 4655 -1560 308 239 18 74 chr12 93221564 93221786 -50564669 + L1ME2 LINE L1 5980 6401 -2 * 21 57 0 0 chr12 93221830 93221865 -50564590 + AT_rich Low_complexity Low_complexity 1 35 0 439 188 38 30 chr12 93221943 93222076 -50564379 - Charlie5 DNA MER1_type -124 2488 2355 42208 36 24 2 chr12 93222098 93228120 -50558335 - L1PA3 LINE L1 0 6155 2 1799 135 0 63 chr12 93228532 93228850 -50557605 - AluJb SINE Alu -14 298 1 184 222 33 89 chr12 93229208 93229298 -50557157 + L2 LINE L2 56 140 -3174 25 0 0 0 chr12 93229575 93229600 -50556855 + AT_rich Low_complexity Low_complexity 1 25 0 391 310 70 13 chr12 93230331 93230489 -50555966 - MLT1I LTR MaLR -141 268 102 1136 186 9 5 chr12 93230493 93230708 -50555747 + MER52C LTR ERV1 1 216 -1062 1278 224 32 11 chr12 93230708 93231056 -50555399 - L1 LINE L1 -1015 6550 6196 * 10409 114 43 62 chr12 93231053 93233039 -50553416 - L1 LINE L1 -3860 3705 1755 4293 129 73 47 chr12 93233041 93233893 -50552562 + MER4-int LTR ERV1 5723 6596 -2 1931 123 8 44 chr12 93233972 93234330 -50552125 + MER4A LTR ERV1 261 664 0 956 206 20 20 chr12 93234331 93234535 -50551920 - L1 LINE L1 -7350 215 12 * 1747 271 84 54 chr12 93234529 93234993 -50551462 - L1M4c LINE L1 -4278 2547 2098 1589 141 54 90 chr12 93234993 93235382 -50551073 + THE1C LTR MaLR 1 375 0 9629 134 13 36 chr12 93235382 93236999 -50549456 + THE1C-int LTR MaLR 1 1580 0 1819 151 58 30 chr12 93236999 93237363 -50549092 + THE1C LTR MaLR 1 374 -1 1747 271 84 54 chr12 93237363 93238186 -50548269 - L1M4c LINE L1 -4726 2099 1036 387 269 0 0 chr12 93238186 93238279 -50548176 + MER82 DNA MER2_type 2 94 -559 270 193 0 0 chr12 93238279 93238336 -50548119 + (TG)n Simple_repeat Simple_repeat 2 58 0 232 180 0 0 chr12 93238361 93238411 -50548044 + L1MC4 LINE L1 6654 6703 -1339 391 176 10 29 chr12 93238411 93238513 -50547942 + (TA)n Simple_repeat Simple_repeat 2 101 0 227 174 0 0 chr12 93238562 93238608 -50547847 + LTR66 LTR ERVL 394 439 -171 225 196 0 0 chr12 93238608 93238654 -50547801 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 933 229 19 37 chr12 93238855 93239069 -50547386 + MER82 DNA MER2_type 444 653 0 359 247 45 45 chr12 93239069 93239223 -50547232 - L1M4c LINE L1 -5509 1033 880 1525 289 96 40 chr12 93239306 93240120 -50546335 - L1M4c LINE L1 -5667 875 17 257 350 36 29 chr12 93240286 93240423 -50546032 - L2 LINE L2 -1 3271 3134 1557 221 24 34 chr12 93242137 93242549 -50543906 + MLT2D LTR ERVL 1 408 -6 322 244 197 24 chr12 93242936 93243063 -50543392 - L2 LINE L2 0 3313 3165 21 57 0 0 chr12 93243135 93243170 -50543285 + AT_rich Low_complexity Low_complexity 1 35 0 494 294 183 20 chr12 93244114 93244464 -50541991 + MLT1I LTR MaLR 3 409 0 9013 75 3 0 chr12 93244538 93246509 -50539946 - L1PA5 LINE L1 -1 6153 4179 1572 186 3 17 chr12 93246545 93246835 -50539620 + AluJb SINE Alu 1 286 -26 232 296 20 59 chr12 93247040 93247192 -50539263 + L2 LINE L2 3168 3313 0 597 183 0 30 chr12 93247353 93247484 -50538971 + FLAM_C SINE Alu 17 143 0 250 366 101 13 chr12 93248003 93248320 -50538135 + L2 LINE L2 2030 2374 -940 3931 245 105 47 chr12 93248937 93249215 -50537240 - L1ME1 LINE L1 -8 6227 5967 245 51 26 0 chr12 93249215 93249254 -50537201 + (TA)n Simple_repeat Simple_repeat 2 41 0 3931 245 105 47 chr12 93249254 93251249 -50535206 - L1ME1 LINE L1 -268 5967 3818 2006 123 32 26 chr12 93251271 93251579 -50534876 + AluSx SINE Alu 1 310 -2 2134 255 87 49 chr12 93251583 93252818 -50533637 - L1ME1 LINE L1 -2678 3537 2256 1206 272 72 47 chr12 93252838 93253543 -50532912 - L1ME1 LINE L1 -4482 1914 1192 237 346 58 10 chr12 93253656 93253760 -50532695 - L2 LINE L2 -5 3308 3200 805 188 0 0 chr12 93253900 93254033 -50532422 - FLAM_C SINE Alu 0 133 1 4937 226 59 104 chr12 93254094 93254540 -50531915 - L1MD1 LINE L1 -11 6231 5766 2377 169 47 7 chr12 93254540 93254983 -50531472 + LOR1b LTR ERV1 1 461 0 4937 226 59 104 chr12 93254983 93256976 -50529479 - L1MD1 LINE L1 -476 5766 4012 2524 153 25 44 chr12 93256976 93257452 -50529003 + MLT1C LTR MaLR 1 467 0 4937 226 59 104 chr12 93257452 93258565 -50527890 - L1MD1 LINE L1 -2230 4012 2850 1278 323 100 24 chr12 93258781 93259618 -50526837 + HAL1 LINE L1 4 904 -1603 1016 101 5 101 chr12 93259624 93259842 -50526613 + AluSg/x SINE Alu 137 312 0 556 251 122 45 chr12 93259853 93260100 -50526355 + HAL1 LINE L1 926 1191 -1316 2235 115 0 6 chr12 93260318 93260631 -50525824 - AluSx SINE Alu 0 312 2 688 397 37 24 chr12 93261151 93261770 -50524685 - L2 LINE L2 0 3272 2646 573 329 59 43 chr12 93262683 93263408 -50523047 - L2 LINE L2 -217 3055 2243 321 285 73 30 chr12 93263587 93263752 -50522703 - MLT1K LTR MaLR -10 578 407 379 365 70 7 chr12 93263984 93264269 -50522186 - L2 LINE L2 -1232 2082 1780 6780 65 8 6 chr12 93264497 93265727 -50520728 - L1PA7 LINE L1 -11 6143 4911 1324 190 8 16 chr12 93265860 93266118 -50520337 + AluJo SINE Alu 24 279 -33 1559 181 87 10 chr12 93267191 93267479 -50518976 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr12 93267653 93267682 -50518773 + AT_rich Low_complexity Low_complexity 1 29 0 2242 106 0 10 chr12 93268525 93268827 -50517628 + AluSx SINE Alu 1 299 -13 199 261 0 0 chr12 93268931 93268977 -50517478 - MIR SINE MIR -115 147 102 198 103 0 0 chr12 93269172 93269201 -50517254 + (GGA)n Simple_repeat Simple_repeat 3 31 0 45 0 0 0 chr12 93269944 93269989 -50516466 + AT_rich Low_complexity Low_complexity 1 45 0 282 412 10 0 chr12 93270176 93270278 -50516177 + L2 LINE L2 3138 3240 -32 524 197 101 28 chr12 93270282 93270460 -50515995 + Charlie1 DNA MER1_type 2389 2579 -182 257 242 0 0 chr12 93270471 93270533 -50515922 + MIR SINE MIR 199 260 -2 212 383 32 27 chr12 93270641 93270829 -50515626 + L2 LINE L2 2844 3032 -240 538 282 0 0 chr12 93271694 93271804 -50514651 + MER81 DNA DNA 5 114 0 639 309 29 5 chr12 93272050 93272260 -50514195 + MIR SINE MIR 10 224 -38 511 231 75 37 chr12 93272302 93272436 -50514019 + MIR SINE MIR 100 238 -24 2795 94 3 0 chr12 93274474 93274848 -50511607 + THE1C LTR MaLR 1 375 0 346 340 81 25 chr12 93275132 93275329 -50511126 - MIR SINE MIR -35 227 20 1840 160 0 31 chr12 93275494 93275813 -50510642 + AluJb SINE Alu 1 309 -3 198 222 0 0 chr12 93276061 93276115 -50510340 + CT-rich Low_complexity Low_complexity 1 54 0 210 305 85 12 chr12 93276115 93276197 -50510258 - L2 LINE L2 -5 3267 3180 185 356 0 0 chr12 93276691 93276750 -50509705 - MIR SINE MIR -64 144 86 1760 235 22 8 chr12 93277569 93278059 -50508396 - L1M4 LINE L1 -2178 3968 3472 2086 137 0 10 chr12 93278388 93278694 -50507761 + AluSx SINE Alu 1 303 -9 38 22 0 0 chr12 93278896 93278941 -50507514 + AT_rich Low_complexity Low_complexity 1 45 0 185 310 0 0 chr12 93279055 93279113 -50507342 + L2 LINE L2 2298 2355 -959 564 317 106 41 chr12 93279284 93279625 -50506830 - L2 LINE L2 -13 3259 2897 214 350 194 25 chr12 93279674 93279994 -50506461 + L2 LINE L2 2599 2972 -342 1155 250 69 3 chr12 93280054 93280374 -50506081 + MER58B DNA MER1_type 1 341 0 564 241 83 7 chr12 93280496 93280641 -50505814 + MIR SINE MIR 91 246 -16 1859 160 17 3 chr12 93281596 93281889 -50504566 - AluJo SINE Alu -13 299 3 702 150 29 17 chr12 93282053 93282226 -50504229 + GA-rich Low_complexity Low_complexity 2 176 0 886 234 16 5 chr12 93282375 93282567 -50503888 - MIR SINE MIR -68 194 1 461 172 108 0 chr12 93282652 93282745 -50503710 - MLT1G1 LTR MaLR 0 595 493 328 213 106 11 chr12 93282770 93282864 -50503591 - MLT1G1 LTR MaLR -191 351 249 3748 124 71 3 chr12 93282864 93283459 -50502996 - THE1C-int LTR MaLR -943 637 3 2282 113 50 16 chr12 93283461 93283824 -50502631 - THE1C LTR MaLR 0 375 1 1354 172 131 10 chr12 93283824 93284121 -50502334 + MSTA LTR MaLR 94 426 -2 8912 154 22 31 chr12 93284125 93285706 -50500749 + MSTA-int LTR MaLR 3 1569 -11 1839 183 97 6 chr12 93285706 93286066 -50500389 + MSTA LTR MaLR 36 428 0 2879 269 24 8 chr12 93286070 93286957 -50499498 - L1MCa LINE L1 -1923 4503 3603 1173 244 14 18 chr12 93286959 93287242 -50499213 - AluJo SINE Alu -30 282 1 10344 182 60 73 chr12 93287242 93289330 -50497125 - L1MCa LINE L1 -2791 3635 1619 2069 139 0 19 chr12 93289330 93289646 -50496809 - AluSq SINE Alu -3 310 1 10344 182 60 73 chr12 93289646 93291241 -50495214 - L1MCa LINE L1 -4807 1619 4 280 353 90 16 chr12 93291515 93291637 -50494818 - MIR3 SINE MIR -30 178 48 235 341 59 107 chr12 93291742 93292032 -50494423 - L2 LINE L2 -15 3257 2982 332 324 39 0 chr12 93292068 93292170 -50494285 - L2 LINE L2 -14 3299 3194 311 266 186 0 chr12 93295270 93295383 -50491072 + MER94 DNA DNA 1 134 0 1732 171 14 25 chr12 93295646 93295959 -50490496 + AluJo SINE Alu 1 310 0 816 197 0 0 chr12 93296434 93296576 -50489879 - AluJb SINE Alu -17 295 154 28 0 0 0 chr12 93297957 93297985 -50488470 + AT_rich Low_complexity Low_complexity 1 28 0 211 222 32 32 chr12 93298700 93298763 -50487692 + (TTCA)n Simple_repeat Simple_repeat 2 64 0 454 284 37 96 chr12 93299154 93299562 -50486893 + MLT1J LTR MaLR 101 484 -27 669 249 41 0 chr12 93299959 93300128 -50486327 - MIR SINE MIR -9 253 78 268 234 54 84 chr12 93300551 93300718 -50485737 + MER103 DNA DNA 3 164 -2 33 0 0 0 chr12 93302264 93302297 -50484158 + AT_rich Low_complexity Low_complexity 1 33 0 2275 104 7 0 chr12 93303576 93303883 -50482572 - AluSc SINE Alu 0 309 1 25 65 0 0 chr12 93304802 93304848 -50481607 + AT_rich Low_complexity Low_complexity 1 46 0 2004 270 31 11 chr12 93305203 93305747 -50480708 + MLT1H1 LTR MaLR 1 555 0 236 184 58 58 chr12 93306013 93306100 -50480355 - L1MCa LINE L1 -5095 1331 1245 320 263 101 95 chr12 93306122 93306480 -50479975 - HAL1 LINE L1 -1322 1185 826 1487 229 79 77 chr12 93306509 93307043 -50479412 + MLT1F1 LTR MaLR 1 560 -7 292 298 94 29 chr12 93307420 93307591 -50478864 - HAL1 LINE L1 -879 1628 1447 227 221 59 29 chr12 93307641 93307709 -50478746 - L1MEd LINE L1 -4969 1150 1081 2874 152 109 9 chr12 93308531 93309065 -50477390 - LTR59 LTR ERV1 -10 587 1 4081 145 16 66 chr12 93309496 93310316 -50476139 - MER4E LTR ERV1 0 779 1 194 306 81 0 chr12 93310578 93310640 -50475815 - L2 LINE L2 -52 3220 3154 22 35 0 0 chr12 93310641 93310670 -50475785 + AT_rich Low_complexity Low_complexity 1 29 0 298 269 173 34 chr12 93311760 93311968 -50474487 + L2 LINE L2 2623 2859 -455 1988 142 29 27 chr12 93311980 93312354 -50474101 + THE1C LTR MaLR 1 375 0 9082 126 79 10 chr12 93312354 93313828 -50472627 + THE1C-int LTR MaLR 1 1576 -4 1925 160 35 16 chr12 93313832 93314200 -50472255 + THE1C LTR MaLR 1 375 0 227 319 167 24 chr12 93314245 93314574 -50471881 + L2 LINE L2 2921 3296 -17 268 240 120 67 chr12 93315194 93315344 -50471111 - L2 LINE L2 -48 3265 3108 234 0 0 0 chr12 93315865 93315891 -50470564 + (A)n Simple_repeat Simple_repeat 1 26 0 212 191 85 0 chr12 93316234 93316281 -50470174 - L2 LINE L2 -2 3311 3261 1790 212 30 51 chr12 93316427 93316899 -50469556 + MLT1C LTR MaLR 6 467 0 435 255 234 72 chr12 93317013 93317159 -50469296 + L3 LINE CR1 1141 1262 -315 499 213 15 44 chr12 93317159 93317295 -50469160 + MER94 DNA DNA 3 134 0 435 255 234 72 chr12 93317295 93317524 -50468931 + L3 LINE CR1 1262 1577 0 351 304 174 30 chr12 93317576 93317777 -50468678 + MIR SINE MIR 20 249 -13 418 306 6 19 chr12 93317929 93318089 -50468366 + GA-rich Low_complexity Low_complexity 4 161 0 192 250 13 53 chr12 93318425 93318501 -50467954 + MIR SINE MIR 145 217 -45 1527 186 45 4 chr12 93319161 93319425 -50467030 - AluJb SINE Alu -37 275 1 331 244 39 146 chr12 93319731 93319936 -50466519 + L2 LINE L2 3004 3186 -86 342 192 27 14 chr12 93321256 93321329 -50465126 - MER94 DNA DNA -14 120 47 431 294 156 28 chr12 93322584 93322795 -50463660 - MIR SINE MIR -13 249 12 194 303 173 49 chr12 93322859 93323021 -50463434 + MIR SINE MIR 14 195 -67 764 311 53 0 chr12 93323195 93323420 -50463035 + MIR SINE MIR 2 238 -24 324 70 0 0 chr12 93323567 93323610 -50462845 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1571 204 0 11 chr12 93323612 93323897 -50462558 - AluJo SINE Alu -30 282 1 2086 207 94 50 chr12 93323897 93324492 -50461963 + MLT1E2 LTR MaLR 4 624 -2 326 310 99 18 chr12 93324960 93325131 -50461324 - MIR SINE MIR -4 258 74 225 290 167 22 chr12 93325382 93325520 -50460935 - L2 LINE L2 -219 3053 2896 573 328 54 12 chr12 93326136 93326377 -50460078 + MIR SINE MIR 12 262 0 195 295 168 0 chr12 93327188 93327283 -50459172 - L2 LINE L2 -22 3291 3181 1480 53 5 26 chr12 93327623 93327812 -50458643 + AluY SINE Alu 111 295 -16 23 0 0 0 chr12 93329040 93329063 -50457392 + AT_rich Low_complexity Low_complexity 1 23 0 405 58 0 0 chr12 93329598 93329650 -50456805 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1796 155 65 0 chr12 93329650 93330122 -50456333 - AluJo SINE Alu 0 491 1 21 0 0 0 chr12 93330396 93330417 -50456038 + AT_rich Low_complexity Low_complexity 1 21 0 421 285 84 36 chr12 93331584 93332001 -50454454 + L1ME4a LINE L1 5678 6114 -7 243 225 0 0 chr12 93332057 93332128 -50454327 + (TA)n Simple_repeat Simple_repeat 2 72 0 180 333 27 63 chr12 93332898 93333120 -50453335 + L2 LINE L2 3100 3313 0 325 327 66 38 chr12 93333472 93333683 -50452772 + MIR SINE MIR 2 218 -44 605 263 36 31 chr12 93334524 93334718 -50451737 - MIR SINE MIR -55 207 13 222 183 200 0 chr12 93335713 93335773 -50450682 - L2 LINE L2 0 3313 3242 300 308 19 47 chr12 93335874 93335981 -50450474 - L2 LINE L2 -229 3043 2940 213 284 46 37 chr12 93336213 93336322 -50450133 + MIR SINE MIR 121 230 -32 201 222 0 0 chr12 93336430 93336493 -50449962 + (TA)n Simple_repeat Simple_repeat 1 63 0 1504 177 69 0 chr12 93337226 93337486 -50448969 + AluJb SINE Alu 1 278 -34 2360 58 13 26 chr12 93338246 93338555 -50447900 + AluY SINE Alu 2 306 -5 635 159 56 0 chr12 93339093 93339200 -50447255 + MER44D DNA MER2_type 1 383 -226 1353 129 22 5 chr12 93339228 93339452 -50447003 + MER44D DNA MER2_type 372 599 -10 2178 84 3 75 chr12 93339988 93340323 -50446132 + AluY SINE Alu 1 311 0 212 291 58 47 chr12 93341089 93341175 -50445280 - L2 LINE L2 0 3313 3227 223 349 31 39 chr12 93341403 93341532 -50444923 + L2 LINE L2 3160 3287 -26 310 253 168 11 chr12 93341635 93341730 -50444725 + MER81 DNA DNA 4 113 -1 336 333 7 42 chr12 93341866 93342048 -50444407 - MIR3 SINE MIR -61 147 5 231 339 0 0 chr12 93342057 93342119 -50444336 - tRNA-Ile-ATT tRNA tRNA -6 71 10 530 304 147 55 chr12 93343773 93344994 -50441461 + L1M4 LINE L1 2287 3619 -2527 23 0 0 0 chr12 93346620 93346643 -50439812 + AT_rich Low_complexity Low_complexity 1 23 0 472 346 97 61 chr12 93346886 93347682 -50438773 + L2 LINE L2 2443 3268 -4 2340 159 47 2 chr12 93347730 93348139 -50438316 - MSTB1 LTR MaLR 0 432 6 270 237 86 11 chr12 93348145 93348238 -50438217 + MIR SINE MIR 92 191 -71 322 275 146 22 chr12 93348317 93348495 -50437960 + MIR SINE MIR 63 262 0 22 0 0 0 chr12 93349700 93349722 -50436733 + AT_rich Low_complexity Low_complexity 1 22 0 345 75 0 0 chr12 93349870 93349923 -50436532 + (TG)n Simple_repeat Simple_repeat 2 54 0 47 0 0 0 chr12 93350216 93350263 -50436192 + AT_rich Low_complexity Low_complexity 1 47 0 887 267 146 39 chr12 93350709 93351372 -50435083 - L2 LINE L2 -1 3312 2574 345 250 98 0 chr12 93351661 93351773 -50434682 - L2 LINE L2 -749 2565 2443 807 194 56 155 chr12 93351776 93352280 -50434175 + LTR37B LTR ERV1 15 468 0 665 312 63 19 chr12 93352280 93352549 -50433906 - L2 LINE L2 -861 2453 2173 1951 42 0 17 chr12 93352571 93352808 -50433647 + AluY SINE Alu 35 267 -44 5963 75 10 1 chr12 93353092 93354407 -50432048 - L1PA7 LINE L1 -115 6039 4718 1388 289 161 8 chr12 93354520 93355122 -50431333 - L2 LINE L2 -1153 2161 1468 853 304 43 0 chr12 93355126 93355448 -50431007 - L2 LINE L2 -2077 1237 902 255 332 142 11 chr12 93357688 93357878 -50428577 - MIR SINE MIR -6 256 42 219 274 0 0 chr12 93357878 93357929 -50428526 - L2 LINE L2 0 3272 3222 23 54 0 0 chr12 93357983 93358020 -50428435 + AT_rich Low_complexity Low_complexity 1 37 0 1238 183 25 88 chr12 93358031 93358170 -50428285 + AluJo SINE Alu 1 147 -165 1506 183 30 0 chr12 93358170 93358432 -50428023 + AluJb SINE Alu 43 312 0 1238 183 25 88 chr12 93358432 93358609 -50427846 + AluJo SINE Alu 147 297 -15 27 29 0 0 chr12 93358616 93358650 -50427805 + AT_rich Low_complexity Low_complexity 1 34 0 375 265 148 32 chr12 93358817 93359006 -50427449 - MIR SINE MIR -34 228 18 2573 164 69 61 chr12 93359034 93359090 -50427365 - L1MB8 LINE L1 -18 6160 6105 1420 234 174 45 chr12 93359090 93359795 -50426660 - L1MD3 LINE L1 -1878 6117 5322 3001 258 46 30 chr12 93360248 93361257 -50425198 + L1PA15-16 LINE L1 740 1559 -5290 208 250 0 0 chr12 93361762 93361818 -50424637 + A-rich Low_complexity Low_complexity 1 56 0 246 136 0 0 chr12 93362073 93362117 -50424338 + (TC)n Simple_repeat Simple_repeat 1 44 0 254 282 26 58 chr12 93362374 93362530 -50423925 - HAL1b LINE L1 -767 581 431 466 112 11 11 chr12 93362612 93362701 -50423754 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 2235 116 7 0 chr12 93362700 93363001 -50423454 - AluSx SINE Alu -9 303 1 463 328 70 29 chr12 93363001 93363315 -50423140 - HAL1 LINE L1 -1066 1441 1115 429 236 181 71 chr12 93364947 93365201 -50421254 - L2 LINE L2 -1 3312 3031 1010 285 81 43 chr12 93365228 93365600 -50420855 - L2 LINE L2 -340 2974 2589 1124 294 123 5 chr12 93365603 93366035 -50420420 - L2 LINE L2 -994 2320 1838 4239 197 13 49 chr12 93366107 93367529 -50418926 - L1ME2 LINE L1 -18 6289 4939 4094 199 18 26 chr12 93367540 93368496 -50417959 + L1 LINE L1 3958 4905 -1241 213 39 0 0 chr12 93368597 93368623 -50417832 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 375 287 59 12 chr12 93369182 93369318 -50417137 + MIR SINE MIR 43 181 -68 247 305 39 16 chr12 93369435 93369563 -50416892 + L1MEd LINE L1 158 288 -5917 284 231 0 0 chr12 93369573 93369625 -50416830 - LTR16A1 LTR ERVL 0 457 406 515 243 175 39 chr12 93369689 93369895 -50416560 - LTR16A1 LTR ERVL -180 277 44 717 344 28 35 chr12 93370114 93370686 -50415769 - ERVL LTR ERVL -446 5318 4751 851 263 53 68 chr12 93370800 93371139 -50415316 + LTR16A1 LTR ERVL 111 444 -13 909 233 59 11 chr12 93371231 93371518 -50414937 + L1MEd LINE L1 1776 2076 -4320 1974 152 3 3 chr12 93371620 93371917 -50414538 + AluSx SINE Alu 1 297 -15 754 261 73 18 chr12 93371926 93372267 -50414188 + L1MEd LINE L1 2285 2644 -3571 448 283 97 16 chr12 93372290 93372537 -50413918 + L1ME2 LINE L1 4731 4997 -1149 2055 112 155 19 chr12 93372550 93372917 -50413538 - MSTA LTR MaLR -11 417 1 6654 195 43 5 chr12 93372917 93374176 -50412279 - MSTA-int LTR MaLR 0 1651 345 1382 146 13 21 chr12 93374176 93374409 -50412046 + AluSg/x SINE Alu 82 312 0 2174 125 14 0 chr12 93374409 93374762 -50411693 - MSTA-int LTR MaLR -1293 358 1 1871 138 191 6 chr12 93374762 93375123 -50411332 - MSTA LTR MaLR 0 428 1 286 264 65 19 chr12 93375123 93375278 -50411177 + L1ME2 LINE L1 4999 5160 -986 1746 229 55 22 chr12 93375332 93375873 -50410582 + L1ME2 LINE L1 5256 5814 -350 1027 209 31 81 chr12 93376006 93376221 -50410234 + L1ME2 LINE L1 5850 6074 -260 1441 168 20 48 chr12 93376221 93376513 -50409942 - AluJo SINE Alu -26 286 3 1027 209 31 81 chr12 93376513 93376636 -50409819 + L1ME2 LINE L1 6074 6331 -3 745 301 4 55 chr12 93376711 93376983 -50409472 - MIR SINE MIR -2 260 3 2154 127 0 0 chr12 93377981 93378280 -50408175 + AluSq SINE Alu 1 299 -14 373 315 23 15 chr12 93378290 93378420 -50408035 + MER5A DNA MER1_type 59 189 0 254 352 39 39 chr12 93380718 93380846 -50405609 - L2 LINE L2 -2 3311 3184 32 26 0 0 chr12 93381437 93381476 -50404979 + AT_rich Low_complexity Low_complexity 1 39 0 1799 226 28 2 chr12 93431794 93432192 -50354263 - MSTB LTR MaLR 0 426 19 351 291 84 38 chr12 93432192 93432289 -50354166 + L1MEd LINE L1 2723 2814 -3401 1477 219 3 7 chr12 93432289 93432581 -50353874 + AluJb SINE Alu 1 291 -21 351 291 84 38 chr12 93432581 93432720 -50353735 + L1MEd LINE L1 2814 2970 -3245 22 0 0 0 chr12 93432720 93432742 -50353713 + AT_rich Low_complexity Low_complexity 1 22 0 303 264 11 11 chr12 93433377 93433464 -50352991 - MLT1H LTR MaLR -462 87 1 289 296 85 40 chr12 93433481 93433657 -50352798 + MIR SINE MIR 23 206 -56 1835 115 51 0 chr12 93433717 93433970 -50352485 + AluSx SINE Alu 34 299 -13 1535 141 34 0 chr12 93434096 93434358 -50352097 - MER7A DNA MER2_type -77 269 1 185 243 0 0 chr12 93434368 93434405 -50352050 + L2 LINE L2 3224 3260 -12 1865 124 60 3 chr12 93434578 93434860 -50351595 - AluJb SINE Alu -14 298 1 267 147 40 67 chr12 93435276 93435351 -50351104 + L1ME3 LINE L1 5940 6012 -150 1316 98 79 19 chr12 93435904 93436149 -50350306 - MER1B DNA MER1_type 0 339 121 469 329 27 0 chr12 93436309 93436458 -50349997 - MIR SINE MIR -92 170 18 449 269 48 59 chr12 93436793 93436979 -50349476 + MIR SINE MIR 28 211 -51 290 143 0 0 chr12 93439194 93439243 -50347212 + L1ME4a LINE L1 5724 5772 -2036 356 276 15 75 chr12 93439275 93439474 -50346981 + L1ME4a LINE L1 5843 6029 -92 1492 228 21 3 chr12 93439485 93439775 -50346680 - AluJo SINE Alu -17 295 1 2328 95 10 0 chr12 93439786 93440092 -50346363 - AluSq SINE Alu -4 309 1 243 88 0 0 chr12 93440604 93440638 -50345817 + (CA)n Simple_repeat Simple_repeat 1 34 0 950 193 84 123 chr12 93441293 93441698 -50344757 - MSTD LTR MaLR -7 389 1 274 85 0 21 chr12 93441886 93441933 -50344522 + MADE1 DNA Mariner 35 80 0 290 67 22 0 chr12 93442370 93442415 -50344040 + (CA)n Simple_repeat Simple_repeat 1 46 0 196 309 119 12 chr12 93443300 93443384 -50343071 + L2 LINE L2 3164 3256 -57 2269 128 0 0 chr12 93443947 93444253 -50342202 - AluSg SINE Alu -4 306 1 2073 229 107 72 chr12 93444543 93445308 -50341147 - MER21B LTR ERV1 -51 812 21 1431 213 18 25 chr12 93445404 93445812 -50340643 + MLT2B1 LTR ERVL 1 451 -64 621 11 23 11 chr12 93445832 93445919 -50340536 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 889 323 137 20 chr12 93446516 93447175 -50339280 - L2 LINE L2 -1447 1867 1132 447 209 0 0 chr12 93448171 93448286 -50338169 + GA-rich Low_complexity Low_complexity 3 117 0 1117 137 46 0 chr12 93448696 93448893 -50337562 - L1PB2 LINE L1 0 6151 5946 229 310 0 23 chr12 93449548 93449635 -50336820 + CT-rich Low_complexity Low_complexity 6 90 0 477 170 0 11 chr12 93449829 93449923 -50336532 - L1MA8 LINE L1 -3 6288 6196 233 273 0 30 chr12 93450461 93450527 -50335928 + L2 LINE L2 2626 2689 -625 530 245 0 0 chr12 93450549 93450647 -50335808 + MIR SINE MIR 13 110 -152 614 269 118 11 chr12 93450680 93450951 -50335504 - MLT1I LTR MaLR 0 409 110 992 270 63 45 chr12 93451503 93451942 -50334513 - MLT1J2 LTR MaLR -4 431 1 1991 244 36 32 chr12 93452488 93453153 -50333302 - L1ME3 LINE L1 0 6162 5495 423 220 103 19 chr12 93453226 93453454 -50333001 + L1ME LINE L1 5263 5494 -668 * 448 303 112 32 chr12 93453452 93454053 -50332402 - L1ME2 LINE L1 -315 5849 5293 313 313 149 15 chr12 93454056 93454324 -50332131 - L1ME2 LINE L1 -875 5271 4968 584 270 50 29 chr12 93454432 93454813 -50331642 - L1ME2 LINE L1 -1316 4830 4442 915 188 26 31 chr12 93454876 93455068 -50331387 - AluJo SINE Alu 0 312 122 186 43 0 0 chr12 93455103 93455126 -50331329 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2106 98 0 4 chr12 93455839 93456115 -50330340 + AluSg SINE Alu 1 275 -35 204 40 0 0 chr12 93456119 93456144 -50330311 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 599 304 29 25 chr12 93456144 93456348 -50330107 - MIR SINE MIR -7 255 51 426 298 44 25 chr12 93456716 93456874 -50329581 + MIR SINE MIR 80 240 -22 277 348 36 9 chr12 93458125 93458237 -50328218 + MIR SINE MIR 32 146 -62 22 0 0 0 chr12 93458414 93458436 -50328019 + AT_rich Low_complexity Low_complexity 1 22 0 757 313 52 69 chr12 93458653 93459359 -50327096 + L2 LINE L2 2560 3263 -50 318 275 75 54 chr12 93459446 93459576 -50326879 - MIR SINE MIR -67 141 45 463 156 67 223 chr12 93460949 93461173 -50325282 + MER5A DNA MER1_type 1 189 0 192 77 0 0 chr12 93462525 93462551 -50323904 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 255 92 41 chr12 93462580 93462678 -50323777 + L3 LINE CR1 650 752 -825 435 52 0 0 chr12 93463223 93463281 -50323174 + (CA)n Simple_repeat Simple_repeat 1 58 0 1851 190 26 0 chr12 93463526 93463874 -50322581 - MLT1B LTR MaLR -8 382 26 338 250 0 36 chr12 93464206 93464290 -50322165 + L2 LINE L2 3233 3313 0 964 240 202 57 chr12 93464694 93464858 -50321597 + MLT1F LTR MaLR 3 142 -400 450 0 0 0 chr12 93464858 93464908 -50321547 + (TC)n Simple_repeat Simple_repeat 1 50 0 964 240 202 57 chr12 93464908 93464968 -50321487 + MLT1F LTR MaLR 142 192 -350 189 0 0 0 chr12 93464968 93464989 -50321466 + (TC)n Simple_repeat Simple_repeat 1 21 0 964 240 202 57 chr12 93464989 93465233 -50321222 + MLT1F LTR MaLR 192 540 -2 400 179 64 0 chr12 93465241 93465319 -50321136 - MER58 DNA MER1_type 0 2420 133 273 339 43 17 chr12 93465988 93466103 -50320352 + MIR SINE MIR 31 148 -60 3837 272 123 46 chr12 93467942 93470257 -50316198 + HAL1 LINE L1 1 2493 -14 2330 109 0 0 chr12 93470329 93470632 -50315823 + AluSx SINE Alu 1 303 -9 2263 90 0 0 chr12 93470785 93471063 -50315392 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr12 93471089 93471111 -50315344 + AT_rich Low_complexity Low_complexity 1 22 0 426 233 124 52 chr12 93471123 93471316 -50315139 + HAL1 LINE L1 1301 1507 -1000 319 349 62 38 chr12 93471766 93471975 -50314480 + L2 LINE L2 2871 3084 -188 222 154 31 62 chr12 93472146 93472211 -50314244 + T-rich Low_complexity Low_complexity 2 64 0 199 345 64 0 chr12 93472601 93472711 -50313744 + L3 LINE CR1 1446 1562 -15 505 265 15 0 chr12 93474313 93474445 -50312010 + L2 LINE L2 2143 2276 -1038 711 223 133 79 chr12 93474457 93474825 -50311630 + L2 LINE L2 2922 3309 -4 408 20 0 0 chr12 93476405 93476454 -50310001 + (TC)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr12 93476453 93476475 -50309980 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 2342 62 10 0 chr12 93476510 93476799 -50309656 - AluY SINE Alu -19 292 1 229 236 28 28 chr12 93477165 93477271 -50309184 + (CA)n Simple_repeat Simple_repeat 1 106 0 413 243 34 34 chr12 93477283 93477460 -50308995 + (CA)n Simple_repeat Simple_repeat 2 178 0 200 194 22 52 chr12 93477536 93477670 -50308785 + (CATATA)n Simple_repeat Simple_repeat 2 131 0 251 270 32 16 chr12 93477674 93477800 -50308655 + (CA)n Simple_repeat Simple_repeat 1 128 0 205 223 21 0 chr12 93477843 93477937 -50308518 + (CA)n Simple_repeat Simple_repeat 1 96 0 515 281 55 55 chr12 93478760 93478998 -50307457 + MIR SINE MIR 16 253 -9 441 299 47 23 chr12 93479110 93479278 -50307177 - MIR SINE MIR -62 146 8 200 180 0 20 chr12 93479627 93479677 -50306778 + GA-rich Low_complexity Low_complexity 3 51 0 360 111 0 0 chr12 93480413 93480467 -50305988 + (CA)n Simple_repeat Simple_repeat 1 54 0 279 0 0 0 chr12 93480466 93480497 -50305958 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 220 305 67 38 chr12 93481547 93481652 -50304803 - MIR3 SINE MIR -45 163 56 243 290 72 0 chr12 93482045 93482114 -50304341 + L3 LINE CR1 1499 1572 -5 724 281 61 45 chr12 93482266 93482676 -50303779 + MLT1J LTR MaLR 1 460 -51 2429 146 15 0 chr12 93483310 93483707 -50302748 + MER57A LTR ERV1 1 403 0 2614 94 0 11 chr12 93483771 93484143 -50302312 + L1PB1 LINE L1 5777 6144 -7 313 262 41 25 chr12 93484314 93484436 -50302019 + LTR67 LTR ERVL 432 555 -2 919 180 5 37 chr12 93484863 93485052 -50301403 + MER5A DNA MER1_type 7 189 0 355 366 76 6 chr12 93485221 93485393 -50301062 + MIR3 SINE MIR 16 199 -9 288 0 0 0 chr12 93485733 93485765 -50300690 + (TG)n Simple_repeat Simple_repeat 2 33 0 277 250 13 0 chr12 93486425 93486501 -50299954 + MER116 DNA Mariner 1 77 -3 543 167 18 0 chr12 93486757 93486871 -50299584 + L1MB7 LINE L1 6054 6169 -15 589 138 0 11 chr12 93487972 93488066 -50298389 + AluJ/FLAM SINE Alu 1 93 -219 351 0 0 0 chr12 93489164 93489203 -50297252 + (GA)n Simple_repeat Simple_repeat 1 39 0 226 282 188 0 chr12 93489288 93489373 -50297082 - L1ME3A LINE L1 -105 6065 5965 359 388 54 64 chr12 93489423 93489940 -50296515 - L1ME3A LINE L1 -202 5968 5370 194 341 61 0 chr12 93491430 93491512 -50294943 + L2 LINE L2 3227 3313 0 498 79 0 0 chr12 93491794 93491870 -50294585 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 191 143 122 41 chr12 93491963 93492012 -50294443 - L2 LINE L2 0 3313 3261 315 355 51 7 chr12 93492100 93492238 -50294217 + MIR SINE MIR 47 190 -72 2338 100 0 3 chr12 93492781 93493081 -50293374 - AluSx SINE Alu -12 300 2 623 270 143 17 chr12 93493321 93493797 -50292658 + L1ME LINE L1 5265 5802 -319 1942 144 21 53 chr12 93493801 93494177 -50292278 + THE1B LTR MaLR 1 364 0 9159 63 0 1 chr12 93494482 93496376 -50290079 + L1PA6 LINE L1 4203 6094 -60 1604 158 44 0 chr12 93496522 93496795 -50289660 + Tigger1 DNA MER2_type 28 312 -2106 4779 113 37 11 chr12 93496795 93497108 -50289347 + L1PB3 LINE L1 5398 5701 -453 2098 123 42 31 chr12 93497108 93497467 -50288988 + THE1B LTR MaLR 2 364 0 4779 113 37 11 chr12 93497467 93497891 -50288564 + L1PB3 LINE L1 5701 6154 0 26 30 0 0 chr12 93497895 93497928 -50288527 + AT_rich Low_complexity Low_complexity 1 33 0 8096 113 11 8 chr12 93497928 93499139 -50287316 + Tigger1 DNA MER2_type 299 1512 -906 2698 173 44 34 chr12 93499175 93499742 -50286713 - LTR27 LTR ERV1 0 636 64 * 3805 125 17 35 chr12 93499736 93500134 -50286321 + Tigger1 DNA MER2_type 1686 2069 -349 7373 42 0 0 chr12 93500134 93501202 -50285253 - L1PA3 LINE L1 -3 6152 5084 3805 125 17 35 chr12 93501202 93501452 -50285003 + Tigger1 DNA MER2_type 2069 2322 -96 1150 65 13 0 chr12 93501464 93501619 -50284836 + Tigger1 DNA MER2_type 1122 1278 -1140 331 194 236 0 chr12 93501622 93501694 -50284761 + Tigger1 DNA MER2_type 2330 2418 0 473 273 109 6 chr12 93501726 93501891 -50284564 - Charlie8 DNA MER1_type -2202 215 34 447 19 0 0 chr12 93505316 93505368 -50281087 + (CA)n Simple_repeat Simple_repeat 1 52 0 1871 154 24 0 chr12 93505501 93505794 -50280661 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr12 93506056 93506085 -50280370 + AT_rich Low_complexity Low_complexity 1 29 0 408 320 62 36 chr12 93506807 93507032 -50279423 + MIR SINE MIR 18 248 -14 211 147 73 118 chr12 93507614 93507682 -50278773 - L2 LINE L2 -3 3310 3246 198 0 0 0 chr12 93508373 93508395 -50278060 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 199 322 126 23 chr12 93510736 93510823 -50275632 + L2 LINE L2 3205 3300 -13 240 387 40 36 chr12 93511014 93511239 -50275216 - L2 LINE L2 -220 3052 2827 349 306 0 0 chr12 93511579 93511664 -50274791 + L2 LINE L2 3188 3272 0 845 261 51 9 chr12 93513641 93513856 -50272599 - MER58A DNA MER1_type 0 224 1 192 271 21 0 chr12 93514408 93514456 -50271999 - MIR SINE MIR -11 251 203 1643 161 0 34 chr12 93514470 93514792 -50271663 + AluJb SINE Alu 1 312 0 3362 209 74 50 chr12 93514884 93516132 -50270323 - L1MA9 LINE L1 -39 6273 4998 230 280 186 8 chr12 93516137 93516255 -50270200 - MIR SINE MIR -99 163 25 505 250 185 11 chr12 93516599 93516788 -50269667 - MIR SINE MIR 0 262 42 21 0 0 0 chr12 93517117 93517138 -50269317 + AT_rich Low_complexity Low_complexity 1 21 0 567 263 16 81 chr12 93518971 93519218 -50267237 - MIR SINE MIR -1 261 31 2111 117 3 3 chr12 93519226 93519547 -50266908 - AluSc SINE Alu 0 309 1 325 323 40 40 chr12 93519643 93519866 -50266589 - L2 LINE L2 0 3313 3091 624 182 91 35 chr12 93520228 93520371 -50266084 - MIR SINE MIR -54 208 58 361 289 128 45 chr12 93520437 93520593 -50265862 - MER5A DNA MER1_type -1 188 20 230 302 38 28 chr12 93520590 93520696 -50265759 - L2 LINE L2 -1821 1493 1387 * 24 53 0 0 chr12 93522198 93522236 -50264219 + AT_rich Low_complexity Low_complexity 1 38 0 306 217 26 0 chr12 93522253 93522368 -50264087 + (TA)n Simple_repeat Simple_repeat 1 118 0 2184 115 0 19 chr12 93523202 93523516 -50262939 - AluSq SINE Alu -1 312 5 1091 321 84 4 chr12 93524353 93524817 -50261638 - L2 LINE L2 -381 2933 2433 447 240 127 33 chr12 93524896 93525085 -50261370 - MIR SINE MIR -52 210 8 481 294 54 54 chr12 93525302 93525523 -50260932 + MIR SINE MIR 30 250 -12 231 242 129 23 chr12 93525604 93525711 -50260744 - MIR SINE MIR -67 141 35 391 272 19 29 chr12 93526148 93526251 -50260204 - MER5A DNA MER1_type -25 164 63 794 212 101 0 chr12 93526263 93526452 -50260003 + L1MB8 LINE L1 5401 5608 -576 2495 170 20 69 chr12 93526577 93526625 -50259830 + L1MB8 LINE L1 5598 5647 -531 2262 132 33 8 chr12 93526625 93526990 -50259465 + THE1C LTR MaLR 1 374 -1 8647 148 70 35 chr12 93526991 93527380 -50259075 + THE1C-int LTR MaLR 1 375 -1205 2098 136 10 0 chr12 93527380 93527674 -50258781 + AluSx SINE Alu 1 297 -15 8647 148 70 35 chr12 93527674 93528811 -50257644 + THE1C-int LTR MaLR 375 1580 0 2427 133 8 31 chr12 93528811 93529195 -50257260 + THE1C LTR MaLR 1 375 0 2495 170 20 69 chr12 93529195 93529749 -50256706 + L1MB8 LINE L1 5645 6173 -5 183 255 43 0 chr12 93529760 93529807 -50256648 - MER5B DNA MER1_type -129 49 1 377 311 223 0 chr12 93529823 93529971 -50256484 + MER5A DNA MER1_type 9 189 0 516 277 114 0 chr12 93530753 93530937 -50255518 + MIR SINE MIR 58 262 0 2327 162 53 22 chr12 93531203 93531654 -50254801 + MLT1C LTR MaLR 1 465 -2 701 234 27 21 chr12 93531693 93531881 -50254574 - MER5A DNA MER1_type 0 189 1 349 291 149 22 chr12 93532204 93532338 -50254117 + MER5B DNA MER1_type 22 172 -6 446 313 14 7 chr12 93532433 93532577 -50253878 + MIR SINE MIR 2 146 -116 211 154 0 26 chr12 93532783 93532822 -50253633 + L2 LINE L2 3271 3308 -5 542 290 161 36 chr12 93532831 93533055 -50253400 + MIR SINE MIR 5 256 -6 470 259 65 7 chr12 93534044 93534183 -50252272 + MIR SINE MIR 30 176 -86 * 498 290 0 8 chr12 93534181 93534305 -50252150 - L2 LINE L2 -1 3312 3190 1843 209 63 3 chr12 93534311 93534694 -50251761 - ERVL LTR ERVL -2584 3180 2775 740 89 32 102 chr12 93535324 93535481 -50250974 - HSMAR2 DNA Mariner -2 1300 1155 7444 120 26 11 chr12 93535776 93536921 -50249534 - HSMAR2 DNA Mariner -139 1163 2 309 296 125 38 chr12 93536928 93537168 -50249287 + HAL1 LINE L1 1623 1883 -624 22 35 0 0 chr12 93537972 93538001 -50248454 + AT_rich Low_complexity Low_complexity 1 29 0 769 141 0 23 chr12 93539385 93539513 -50246942 + AluJb SINE Alu 1 125 -187 31 0 0 0 chr12 93539515 93539546 -50246909 + AT_rich Low_complexity Low_complexity 1 31 0 660 257 70 55 chr12 93539546 93539818 -50246637 + L2 LINE L2 3038 3313 0 2045 106 17 7 chr12 93539989 93540281 -50246174 - AluSx SINE Alu -17 295 1 1066 124 23 17 chr12 93541270 93541447 -50245008 - L1PA11 LINE L1 0 6174 5997 901 233 36 14 chr12 93541731 93541950 -50244505 + MER58A DNA MER1_type 1 224 0 207 200 0 0 chr12 93544224 93544269 -50242186 + T-rich Low_complexity Low_complexity 1 45 0 5713 145 18 1 chr12 93544402 93545334 -50241121 + L1MC1 LINE L1 5386 6333 0 308 303 41 25 chr12 93546114 93546236 -50240219 + L2 LINE L2 2852 2975 -338 430 134 0 24 chr12 93546728 93546961 -50239494 + AluJo SINE Alu 3 287 -25 201 39 0 0 chr12 93546961 93546987 -50239468 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 565 337 20 6 chr12 93548357 93548568 -50237887 - MIR SINE MIR -13 249 38 221 375 44 29 chr12 93548643 93548779 -50237676 + L2 LINE L2 3123 3260 -12 868 213 0 0 chr12 93549147 93549311 -50237144 + FRAM SINE Alu 3 166 0 286 363 153 23 chr12 93550072 93550463 -50235992 + L2 LINE L2 2418 2859 -455 1871 125 14 14 chr12 93550771 93551051 -50235404 + AluSx SINE Alu 27 306 -6 409 279 47 21 chr12 93551092 93551282 -50235173 + L1MC5 LINE L1 7713 7907 -54 331 291 103 0 chr12 93551331 93551448 -50235007 - MIR SINE MIR -70 192 64 14083 178 40 20 chr12 93551589 93551725 -50234730 + L1M2 LINE L1 2353 2485 -3759 2270 97 7 0 chr12 93551725 93552024 -50234431 + AluSg1 SINE Alu 1 301 -8 14083 178 40 20 chr12 93552024 93554708 -50231747 + L1M2 LINE L1 2485 5221 -1023 447 19 0 0 chr12 93554708 93554760 -50231695 + (TA)n Simple_repeat Simple_repeat 1 52 0 14083 178 40 20 chr12 93554760 93555046 -50231409 + L1M2 LINE L1 5221 5500 -744 1467 147 157 0 chr12 93555162 93555546 -50230909 + L1MA8 LINE L1 5138 5598 -702 297 224 282 0 chr12 93555555 93555640 -50230815 + AluJo/FLAM SINE Alu 1 109 -193 728 206 0 38 chr12 93555642 93555787 -50230668 + AluSg/x SINE Alu 150 290 -20 3800 118 9 60 chr12 93555787 93556523 -50229932 + L1MA8 LINE L1 5593 6291 0 728 206 0 38 chr12 93556523 93556537 -50229918 + AluSg/x SINE Alu 290 303 -7 181 326 149 57 chr12 93556550 93556725 -50229730 - L2 LINE L2 -93 3179 2989 1098 296 77 51 chr12 93556921 93557606 -50228849 + HAL1 LINE L1 315 1017 -1490 497 238 100 9 chr12 93557839 93558049 -50228406 + HAL1 LINE L1 1031 1259 -1248 2947 250 83 89 chr12 93558049 93558879 -50227576 + L2 LINE L2 1733 2567 -746 1932 163 11 37 chr12 93558879 93559253 -50227202 - THE1B LTR MaLR 0 364 1 2947 250 83 89 chr12 93559253 93559789 -50226666 + L2 LINE L2 2567 3074 -239 312 91 0 0 chr12 93559789 93559833 -50226622 + (CA)n Simple_repeat Simple_repeat 2 45 0 2947 250 83 89 chr12 93559833 93560026 -50226429 + L2 LINE L2 3074 3267 -46 1473 285 101 34 chr12 93560046 93560927 -50225528 + HAL1 LINE L1 1233 2172 -335 228 123 18 35 chr12 93561544 93561601 -50224854 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 408 372 55 26 chr12 93561809 93562156 -50224299 - L2 LINE L2 -416 2898 2542 2892 111 17 7 chr12 93562247 93562669 -50223786 + MSTA LTR MaLR 1 426 -2 2124 110 21 3 chr12 93562989 93563279 -50223176 + AluSq SINE Alu 1 295 -18 2344 92 0 0 chr12 93563876 93564179 -50222276 - AluSc SINE Alu -6 303 1 1408 126 40 9 chr12 93566096 93566318 -50220137 + MER30 DNA MER1_type 2 230 0 587 288 44 62 chr12 93566421 93566810 -50219645 - L1MC4a LINE L1 -1905 5903 5522 1094 196 58 12 chr12 93566950 93567190 -50219265 - AluJb SINE Alu -23 289 39 1024 258 61 89 chr12 93567418 93567876 -50218579 + L2 LINE L2 2863 3307 -6 1772 165 21 4 chr12 93568812 93569091 -50217364 + AluJb SINE Alu 1 284 -28 24 53 0 0 chr12 93571490 93571528 -50214927 + AT_rich Low_complexity Low_complexity 1 38 0 311 276 29 19 chr12 93571747 93571852 -50214603 + L1MCa LINE L1 1995 2100 -4326 301 302 170 0 chr12 93572101 93572207 -50214248 + L2 LINE L2 3141 3264 -8 21 0 0 0 chr12 93572515 93572536 -50213919 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr12 93573804 93573846 -50212609 + AT_rich Low_complexity Low_complexity 1 42 0 334 226 40 73 chr12 93573955 93574079 -50212376 + L2 LINE L2 3194 3313 0 357 121 89 129 chr12 93574143 93574267 -50212188 + L1MA9 LINE L1 6158 6276 -36 808 278 121 36 chr12 93574282 93574797 -50211658 - L2 LINE L2 -12 3301 2590 509 243 54 67 chr12 93574798 93575006 -50211449 - MIR SINE MIR -13 249 45 196 341 135 32 chr12 93575259 93575385 -50211070 - L3 LINE CR1 -2 1575 1437 431 305 63 23 chr12 93577075 93577249 -50209206 - MIR SINE MIR -54 208 28 2071 150 0 0 chr12 93577475 93577768 -50208687 - AluSx SINE Alu -19 293 1 22 35 0 0 chr12 93579303 93579332 -50207123 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 93579361 93579382 -50207073 + AT_rich Low_complexity Low_complexity 1 21 0 320 315 182 0 chr12 93580081 93580224 -50206231 - L2 LINE L2 0 3272 3104 223 321 0 0 chr12 93580549 93580605 -50205850 + L2 LINE L2 3256 3311 -2 780 239 6 6 chr12 93581312 93581492 -50204963 + AluJb SINE Alu 133 312 0 429 127 0 0 chr12 93581503 93581582 -50204873 + (CAGG)n Simple_repeat Simple_repeat 4 82 0 471 232 107 0 chr12 93581959 93582071 -50204384 - MER5C DNA MER1_type -200 124 1 1518 116 89 20 chr12 93582524 93582816 -50203639 + THE1C LTR MaLR 1 312 -63 182 0 107 0 chr12 93584177 93584205 -50202250 + T-rich Low_complexity Low_complexity 5 35 0 7024 54 13 0 chr12 93584205 93585411 -50201044 - L1PA8 LINE L1 -18 6469 5258 5758 100 21 0 chr12 93585414 93586286 -50200169 - L1PA8 LINE L1 -1308 5153 4264 * 6968 107 7 5 chr12 93586278 93587299 -50199156 - L1PA8 LINE L1 -5140 1321 299 437 94 0 0 chr12 93587298 93587362 -50199093 - L1PA8 LINE L1 -6388 73 10 * 200 125 0 25 chr12 93587533 93587573 -50198882 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 551 171 0 0 chr12 93587578 93587666 -50198789 - FRAM SINE Alu -33 143 56 2352 209 44 36 chr12 93588362 93588912 -50197543 + MLT2B3 LTR ERVL 1 554 0 915 111 0 22 chr12 93589758 93589893 -50196562 + FLAM_C SINE Alu 1 132 -1 21 36 0 0 chr12 93590632 93590660 -50195795 + AT_rich Low_complexity Low_complexity 1 28 0 1136 95 0 0 chr12 93591543 93591701 -50194754 + L1MA1 LINE L1 6141 6298 -4 225 184 0 79 chr12 93591711 93591787 -50194668 + A-rich Low_complexity Low_complexity 1 70 0 1708 171 27 14 chr12 93591924 93592216 -50194239 + AluJb SINE Alu 1 296 -16 223 331 8 57 chr12 93592345 93592469 -50193986 - MIR SINE MIR -136 126 9 920 191 60 60 chr12 93593348 93593439 -50193016 + L1ME3 LINE L1 5791 5881 -281 1361 101 10 14 chr12 93593439 93593644 -50192811 + L1PA11 LINE L1 5967 6174 0 920 191 60 60 chr12 93593644 93593850 -50192605 + L1ME3 LINE L1 5880 6088 -74 27 0 0 0 chr12 93593852 93593879 -50192576 + AT_rich Low_complexity Low_complexity 1 27 0 514 270 176 37 chr12 93594084 93594380 -50192075 + MER46C DNA MER2_type 1 337 -1 463 319 16 11 chr12 93595882 93596064 -50190391 + MIR SINE MIR 47 229 -33 1860 213 21 50 chr12 93596198 93596733 -50189722 - MLT1E3 LTR MaLR 0 624 106 365 315 30 56 chr12 93597062 93597259 -50189196 + L2 LINE L2 2842 3033 -239 602 321 106 42 chr12 93597267 93597578 -50188877 - L2 LINE L2 0 3272 2942 2285 93 13 7 chr12 93597618 93597920 -50188535 - AluSx SINE Alu -8 304 1 2479 65 0 3 chr12 93597931 93598239 -50188216 - AluY SINE Alu -4 307 1 426 376 73 12 chr12 93598356 93598686 -50187769 - L2 LINE L2 -601 2713 2364 1014 245 127 26 chr12 93598946 93599169 -50187286 + L2 LINE L2 2932 3204 -109 201 74 0 0 chr12 93599169 93599196 -50187259 + (TG)n Simple_repeat Simple_repeat 2 28 0 1014 245 127 26 chr12 93599196 93599319 -50187136 + L2 LINE L2 3204 3313 0 675 305 145 36 chr12 93599329 93599936 -50186519 - L2 LINE L2 -1035 2279 1607 360 305 68 0 chr12 93600121 93600239 -50186216 + L2 LINE L2 3147 3272 0 255 286 52 0 chr12 93600281 93600358 -50186097 - L2 LINE L2 -8 3305 3225 351 324 112 65 chr12 93601188 93601695 -50184760 + L2 LINE L2 2090 2620 -694 209 414 0 0 chr12 93601732 93601819 -50184636 + MIR SINE MIR 45 131 -77 366 333 0 16 chr12 93602449 93602572 -50183883 + L2 LINE L2 3187 3307 -6 481 283 107 23 chr12 93603150 93603327 -50183128 + MIR SINE MIR 17 208 -54 11954 155 14 17 chr12 93604086 93606624 -50179831 - L1MA2 LINE L1 0 6304 3780 1777 124 49 4 chr12 93606624 93606889 -50179566 - AluSx SINE Alu -35 277 1 11954 155 14 17 chr12 93606889 93607774 -50178681 - L1MA2 LINE L1 -2524 3780 2894 504 329 86 46 chr12 93608020 93608437 -50178018 + L2 LINE L2 2827 3260 -12 728 312 122 26 chr12 93608700 93609078 -50177377 + L3b LINE CR1 1117 1530 -53 267 331 6 47 chr12 93609415 93609584 -50176871 + L2 LINE L2 2887 3048 -224 198 328 31 0 chr12 93612424 93612488 -50173967 - MIR3 SINE MIR -52 156 91 240 266 62 0 chr12 93612908 93612972 -50173483 + MIR SINE MIR 37 104 -158 2783 92 8 0 chr12 93613307 93613698 -50172757 + L1PA16 LINE L1 5764 6157 -9 23 54 0 0 chr12 93613698 93613735 -50172720 + AT_rich Low_complexity Low_complexity 1 37 0 2174 147 0 0 chr12 93613975 93614287 -50172168 - AluSx SINE Alu 0 312 1 507 274 7 14 chr12 93614517 93614663 -50171792 + MIR SINE MIR 102 246 -16 449 350 71 26 chr12 93614708 93615017 -50171438 + L3b LINE CR1 1111 1433 -150 479 327 117 14 chr12 93615314 93615528 -50170927 + MIR SINE MIR 20 255 -7 327 268 68 49 chr12 93616066 93616271 -50170184 - MLT1J LTR MaLR -238 273 65 504 383 0 0 chr12 93617378 93617553 -50168902 + MIR3 SINE MIR 31 205 -3 2461 85 37 8 chr12 93618267 93618619 -50167836 - THE1B LTR MaLR -2 362 1 229 292 77 0 chr12 93618656 93618721 -50167734 - MER91A DNA MER1_type -28 168 99 2068 153 93 25 chr12 93619268 93619667 -50166788 - MSTB LTR MaLR 0 426 1 865 200 0 0 chr12 93619683 93619828 -50166627 + AluJb SINE Alu 151 295 -17 1166 191 29 0 chr12 93620128 93620337 -50166118 - MER20 DNA MER1_type -4 215 1 825 304 19 15 chr12 93620341 93620601 -50165854 + MIR SINE MIR 2 262 0 2108 95 3 11 chr12 93620765 93621083 -50165372 - AluSc SINE Alu 0 316 1 1250 270 77 19 chr12 93621161 93621627 -50164828 + MLT1J LTR MaLR 1 493 -18 403 152 0 0 chr12 93621874 93621940 -50164515 - LTR23 LTR ERV1 -34 403 338 2425 138 18 0 chr12 93622292 93622675 -50163780 + MLT1B LTR MaLR 1 390 0 1064 296 98 26 chr12 93623421 93623881 -50162574 + MLT1J LTR MaLR 3 495 -16 214 258 0 0 chr12 93625768 93625834 -50160621 + (TA)n Simple_repeat Simple_repeat 2 67 0 743 171 130 93 chr12 93626300 93626516 -50159939 - MER58A DNA MER1_type 0 224 1 475 276 16 16 chr12 93626622 93626749 -50159706 - MER5B DNA MER1_type -26 152 26 396 188 10 42 chr12 93626832 93626928 -50159527 - MLT1J2 LTR MaLR 0 450 358 309 226 24 74 chr12 93626966 93627107 -50159348 - MLT1J2 LTR MaLR -235 211 71 433 239 35 9 chr12 93629122 93629235 -50157220 - MIR3 SINE MIR -3 205 90 2217 104 0 13 chr12 93629483 93629782 -50156673 + AluSg1 SINE Alu 1 295 -14 2150 118 0 20 chr12 93630383 93630689 -50155766 - AluSx SINE Alu -12 300 1 2393 86 0 0 chr12 93630758 93631061 -50155394 - AluSg SINE Alu -7 303 1 970 192 5 28 chr12 93632672 93632886 -50153569 - MER3 DNA MER1_type 0 209 1 213 319 75 32 chr12 93633051 93633145 -50153310 - MIR SINE MIR -74 134 37 398 315 42 4 chr12 93633155 93633313 -50153142 + MIR SINE MIR 15 172 -67 216 279 139 0 chr12 93633538 93633624 -50152831 + MIR SINE MIR 159 256 -6 233 278 209 34 chr12 93634336 93634494 -50151961 - MIR3 SINE MIR -67 141 9 418 364 17 0 chr12 93634660 93634836 -50151619 + L3 LINE CR1 579 757 -820 2450 146 5 12 chr12 93634846 93635257 -50151198 + L1PA16 LINE L1 5750 6157 -9 1104 246 84 23 chr12 93635369 93635540 -50150915 + MLT1C LTR MaLR 10 169 -298 1487 138 3 28 chr12 93635540 93635829 -50150626 - L1MA4 LINE L1 -1 6299 6018 1104 246 84 23 chr12 93635829 93636087 -50150368 + MLT1C LTR MaLR 169 465 -2 489 270 73 64 chr12 93636286 93636490 -50149965 + MIR SINE MIR 23 228 -34 5900 109 15 0 chr12 93636516 93637532 -50148923 - L1PA13 LINE L1 -2 6161 5128 236 304 0 54 chr12 93637581 93637673 -50148782 + L3 LINE CR1 1031 1117 -460 339 288 170 28 chr12 93637677 93637889 -50148566 - MIR SINE MIR 0 262 21 211 340 103 26 chr12 93637961 93638117 -50148338 + L3 LINE CR1 1221 1388 -189 1999 83 13 23 chr12 93638164 93638466 -50147989 + L1MA1 LINE L1 6000 6298 -4 22 0 0 0 chr12 93638466 93638488 -50147967 + AT_rich Low_complexity Low_complexity 1 22 0 205 315 135 0 chr12 93638891 93638980 -50147475 + MIR SINE MIR 2 102 -160 633 314 11 0 chr12 93639313 93639488 -50146967 + MIR SINE MIR 9 185 -77 187 229 0 0 chr12 93639556 93639591 -50146864 - L2 LINE L2 -40 3232 3198 253 226 32 0 chr12 93639596 93639658 -50146797 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 237 220 20 0 chr12 93639659 93639709 -50146746 + L2 LINE L2 3172 3222 -91 745 159 16 0 chr12 93639773 93639890 -50146565 + FLAM_C SINE Alu 5 126 -186 342 0 0 0 chr12 93639890 93639928 -50146527 + (TAA)n Simple_repeat Simple_repeat 2 39 0 232 320 124 21 chr12 93639997 93640094 -50146361 - L2 LINE L2 -183 3089 2983 205 242 106 30 chr12 93640487 93640553 -50145902 + L2 LINE L2 3203 3273 -40 303 281 116 25 chr12 93640647 93640768 -50145687 - MIR SINE MIR 0 262 131 609 287 20 0 chr12 93640771 93640966 -50145489 - L2 LINE L2 -1 3312 3114 223 50 75 0 chr12 93640966 93641006 -50145449 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 914 279 14 11 chr12 93641017 93641304 -50145151 - LTR16A LTR ERVL -125 325 38 427 250 105 32 chr12 93641328 93641452 -50145003 + L2 LINE L2 3181 3313 0 325 226 70 0 chr12 93641459 93641574 -50144881 - Charlie7 DNA MER1_type -111 2501 2379 1959 159 10 45 chr12 93641672 93642069 -50144386 + MLT1B LTR MaLR 1 383 -7 814 281 95 48 chr12 93642114 93642755 -50143700 - Charlie7 DNA MER1_type -1937 675 5 2020 161 38 29 chr12 93643526 93643943 -50142512 - L1PA16 LINE L1 -2 6164 5744 1073 183 40 0 chr12 93643945 93644169 -50142286 + L1 LINE L1 4077 4309 -1837 231 224 53 13 chr12 93644383 93644459 -50141996 + MIR SINE MIR 120 198 -64 305 247 11 45 chr12 93644787 93644876 -50141579 - MIR SINE MIR -89 173 88 1728 155 0 0 chr12 93645973 93646231 -50140224 - AluJb SINE Alu -54 258 1 364 177 0 0 chr12 93646358 93646420 -50140035 - U7 snRNA snRNA -1 62 1 272 296 64 48 chr12 93646420 93646545 -50139910 - MIR SINE MIR -59 149 23 23 0 0 0 chr12 93646919 93646942 -50139513 + AT_rich Low_complexity Low_complexity 1 23 0 2120 123 7 7 chr12 93647931 93648232 -50138223 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr12 93648379 93648402 -50138053 + AT_rich Low_complexity Low_complexity 1 23 0 330 339 65 11 chr12 93648962 93649148 -50137307 + L2 LINE L2 2854 3049 -223 447 241 41 41 chr12 93649237 93649407 -50137048 - MER104 DNA Tc2 -8 172 3 276 298 99 61 chr12 93649417 93649548 -50136907 + L2 LINE L2 3137 3272 0 262 303 0 0 chr12 93649811 93649877 -50136578 + MIR3 SINE MIR 128 193 -15 1084 241 76 110 chr12 93651871 93652284 -50134171 + L1ME3A LINE L1 5488 5913 -257 2401 53 0 0 chr12 93652284 93652588 -50133867 - AluY SINE Alu 0 304 1 1084 241 76 110 chr12 93652588 93652848 -50133607 + L1ME3A LINE L1 5913 6141 -29 2010 191 85 39 chr12 93652848 93652921 -50133534 - MLT2B2 LTR ERVL 0 515 447 426 39 0 0 chr12 93652921 93652973 -50133482 + (CA)n Simple_repeat Simple_repeat 2 53 0 2010 191 85 39 chr12 93652973 93653391 -50133064 - MLT2B2 LTR ERVL -68 447 1 810 85 0 0 chr12 93653819 93653925 -50132530 + AluY SINE Alu 205 310 -1 1967 135 7 0 chr12 93654414 93654696 -50131759 - AluSx SINE Alu -7 305 22 335 298 50 16 chr12 93655219 93655340 -50131115 + L2 LINE L2 2537 2661 -653 224 366 142 8 chr12 93655784 93655918 -50130537 + L2 LINE L2 3121 3272 0 2551 68 0 3 chr12 93656162 93656471 -50129984 - AluY SINE Alu -3 308 1 220 308 0 13 chr12 93656639 93656717 -50129738 + MIR SINE MIR 75 151 -111 2366 97 0 0 chr12 93657233 93657544 -50128911 + AluY SINE Alu 1 311 0 236 229 121 12 chr12 93658222 93658305 -50128150 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 93659120 93659225 -50127230 + CT-rich Low_complexity Low_complexity 2 109 0 2259 107 0 3 chr12 93659293 93659592 -50126863 - AluSq SINE Alu -15 298 1 2187 98 0 7 chr12 93659794 93660100 -50126355 - AluSx SINE Alu 0 304 1 216 314 57 57 chr12 93660896 93661020 -50125435 - L2 LINE L2 -1 3312 3189 298 85 43 0 chr12 93661217 93661264 -50125191 + AluSc SINE Alu 238 286 -13 363 73 0 0 chr12 93661264 93661319 -50125136 + (TA)n Simple_repeat Simple_repeat 2 56 0 189 0 0 0 chr12 93661906 93661927 -50124528 + (T)n Simple_repeat Simple_repeat 1 21 0 655 217 99 0 chr12 93661985 93662137 -50124318 + L1PB4 LINE L1 5951 6117 -39 553 307 4 9 chr12 93662144 93662369 -50124086 - LTR16B LTR ERVL -34 430 207 284 237 0 82 chr12 93662431 93662528 -50123927 - LTR16B LTR ERVL -375 89 1 416 114 29 14 chr12 93662557 93662627 -50123828 + MLT1A2 LTR MaLR 1 71 -303 2327 95 0 3 chr12 93663629 93663933 -50122522 + AluSg SINE Alu 1 303 -7 2117 121 0 20 chr12 93664002 93664307 -50122148 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr12 93665180 93665200 -50121255 + (T)n Simple_repeat Simple_repeat 1 20 0 655 217 99 0 chr12 93665258 93665410 -50121045 + L1PB4 LINE L1 5951 6117 -39 553 307 4 9 chr12 93665417 93665642 -50120813 - LTR16B LTR ERVL -34 430 207 284 237 0 82 chr12 93665704 93665801 -50120654 - LTR16B LTR ERVL -375 89 1 416 114 29 14 chr12 93665830 93665900 -50120555 + MLT1A2 LTR MaLR 1 71 -303 1775 162 28 3 chr12 93666902 93667192 -50119263 + AluSx SINE Alu 1 297 -15 1134 196 20 8 chr12 93667347 93667592 -50118863 - MLT1E1 LTR MaLR -406 248 1 22 0 0 0 chr12 93667905 93667927 -50118528 + AT_rich Low_complexity Low_complexity 1 22 0 2250 101 3 3 chr12 93667935 93668231 -50118224 + AluSp SINE Alu 1 296 -17 219 114 0 0 chr12 93668231 93668266 -50118189 + (TA)n Simple_repeat Simple_repeat 1 35 0 192 40 0 0 chr12 93668376 93668401 -50118054 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 296 133 49 chr12 93668603 93669183 -50117272 - L2 LINE L2 -5 3308 2668 24 0 0 0 chr12 93669387 93669411 -50117044 + AT_rich Low_complexity Low_complexity 1 24 0 2260 80 0 0 chr12 93669578 93669854 -50116601 + AluSc SINE Alu 1 276 -33 21 71 0 0 chr12 93669886 93669928 -50116527 + AT_rich Low_complexity Low_complexity 1 42 0 294 29 0 0 chr12 93670132 93670167 -50116288 + U2 snRNA snRNA 1 35 -153 1002 73 0 0 chr12 93670840 93670964 -50115491 + AluY SINE Alu 174 297 -14 254 288 32 0 chr12 93671166 93671291 -50115164 + L1ME3A LINE L1 938 1066 -5053 2025 123 7 0 chr12 93671361 93671637 -50114818 + AluSx SINE Alu 28 305 -7 479 322 64 17 chr12 93671708 93672006 -50114449 + L1ME3A LINE L1 4018 4329 -1800 5424 161 18 20 chr12 93672032 93674075 -50112380 + L1MA6 LINE L1 4259 6299 -1 1669 264 63 28 chr12 93674162 93675587 -50110868 + L1ME3A LINE L1 4462 5938 -215 1285 204 22 41 chr12 93676038 93676307 -50110148 + AluJo SINE Alu 1 264 -48 201 39 0 0 chr12 93676317 93676343 -50110112 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 366 23 0 0 chr12 93676436 93676479 -50109976 + (TG)n Simple_repeat Simple_repeat 2 44 0 333 0 0 0 chr12 93676478 93676515 -50109940 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 21 0 0 0 chr12 93676515 93676536 -50109919 + AT_rich Low_complexity Low_complexity 1 21 0 2260 93 23 0 chr12 93676549 93676850 -50109605 + AluSq SINE Alu 1 308 -5 2401 79 3 7 chr12 93677274 93677579 -50108876 + AluSp SINE Alu 5 308 -5 648 245 159 10 chr12 93677895 93678103 -50108352 + MIR SINE MIR 9 247 -15 204 211 158 0 chr12 93678589 93678646 -50107809 + MIR SINE MIR 104 169 -93 291 29 0 0 chr12 93678838 93678873 -50107582 + U2 snRNA snRNA 1 35 -153 280 208 75 28 chr12 93679650 93679756 -50106699 + L1ME LINE L1 5743 5853 -268 260 319 0 25 chr12 93680237 93680356 -50106099 + GA-rich Low_complexity Low_complexity 5 120 0 587 361 4 28 chr12 93681538 93681793 -50104662 - L2 LINE L2 -235 3078 2830 1858 104 0 0 chr12 93682248 93682488 -50103967 + AluSx SINE Alu 56 295 -17 773 48 19 0 chr12 93682488 93682593 -50103862 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 859 221 122 27 chr12 93683094 93683356 -50103099 + MLT1I LTR MaLR 123 409 0 1455 184 31 14 chr12 93684295 93684425 -50102030 + AluJb SINE Alu 1 127 -185 225 0 0 0 chr12 93684425 93684450 -50102005 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 1455 184 31 14 chr12 93684450 93684613 -50101842 + AluJb SINE Alu 127 299 -13 2281 104 0 0 chr12 93684643 93684952 -50101503 - AluY SINE Alu -2 309 1 216 314 57 57 chr12 93685091 93685215 -50101240 + L2 LINE L2 3189 3312 -1 2188 98 0 7 chr12 93686011 93686317 -50100138 + AluSx SINE Alu 1 304 0 186 320 53 27 chr12 93686470 93686518 -50099937 - L2 LINE L2 -8 3305 3253 2284 94 0 7 chr12 93686518 93686816 -50099639 + AluSx SINE Alu 1 296 -16 186 320 53 27 chr12 93686816 93686842 -50099613 - L2 LINE L2 -60 3253 3229 443 319 32 21 chr12 93687191 93687379 -50099076 - L2 LINE L2 0 3313 3124 231 36 0 0 chr12 93687465 93687493 -50098962 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr12 93691212 93691241 -50095214 + AT_rich Low_complexity Low_complexity 1 29 0 2260 50 0 0 chr12 93691385 93691645 -50094810 - AluY SINE Alu -13 298 39 280 297 45 45 chr12 93691906 93692061 -50094394 + MER103 DNA DNA 3 157 -9 226 154 0 0 chr12 93692743 93692782 -50093673 - MLT1G LTR MaLR -15 575 537 442 266 67 67 chr12 93693875 93693904 -50092551 - MLT1H LTR MaLR -229 320 292 2256 84 19 10 chr12 93693904 93694212 -50092243 - AluSp SINE Alu -1 312 2 442 266 67 67 chr12 93694212 93694498 -50091957 - MLT1H LTR MaLR -256 293 5 418 241 26 0 chr12 93694540 93694656 -50091799 + MLT1H LTR MaLR 431 549 0 635 151 50 0 chr12 93694989 93695108 -50091347 + MSTD LTR MaLR 272 396 0 418 272 60 50 chr12 93695483 93695651 -50090804 + MIR3 SINE MIR 12 181 -27 575 332 68 4 chr12 93695706 93695941 -50090514 + MIR SINE MIR 2 251 -11 205 222 19 0 chr12 93696704 93696758 -50089697 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 449 328 66 0 chr12 93697065 93697248 -50089207 - MER115 DNA AcHobo -496 197 3 657 36 0 0 chr12 93697606 93697690 -50088765 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 4411 205 63 4 chr12 93698246 93699228 -50087227 + MER45B DNA AcHobo 1 1040 0 1176 271 133 15 chr12 93699329 93699867 -50086588 + L2 LINE L2 2712 3312 -1 250 289 20 86 chr12 93700077 93700229 -50086226 + MIR SINE MIR 65 206 -56 24 0 0 0 chr12 93701120 93701144 -50085311 + AT_rich Low_complexity Low_complexity 1 24 0 319 276 95 19 chr12 93701762 93701867 -50084588 + MIR SINE MIR 79 191 -71 195 114 0 0 chr12 93702126 93702161 -50084294 + (TC)n Simple_repeat Simple_repeat 1 35 0 279 278 148 57 chr12 93702568 93702744 -50083711 + MIR SINE MIR 57 248 -14 311 289 112 10 chr12 93703263 93703460 -50082995 + L1ME LINE L1 5618 5834 -287 21 57 0 0 chr12 93703568 93703603 -50082852 + AT_rich Low_complexity Low_complexity 1 35 0 1818 89 6 112 chr12 93703682 93703996 -50082459 - AluSx SINE Alu -15 297 17 2311 223 32 22 chr12 93704152 93704846 -50081609 + L1M4 LINE L1 2452 3152 -2994 296 273 0 0 chr12 93705108 93705185 -50081270 - MER2 DNA MER2_type 0 345 269 1358 166 0 5 chr12 93705195 93705418 -50081037 + AluJb SINE Alu 1 222 -90 188 132 0 26 chr12 93705422 93705460 -50080995 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1243 130 0 28 chr12 93705462 93705677 -50080778 - MER2 DNA MER2_type -136 209 1 1875 151 3 26 chr12 93705725 93706036 -50080419 + AluJb SINE Alu 1 304 -8 391 284 206 10 chr12 93706125 93706319 -50080136 - MIR SINE MIR -26 236 5 255 211 39 0 chr12 93706454 93706506 -50079949 - L2 LINE L2 -215 3057 3004 293 326 116 0 chr12 93706508 93706655 -50079800 - MIR SINE MIR -31 231 68 1653 183 40 0 chr12 93706961 93707261 -50079194 + AluJb SINE Alu 1 312 0 561 52 0 0 chr12 93707282 93707359 -50079096 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 21 0 0 0 chr12 93707395 93707416 -50079039 + AT_rich Low_complexity Low_complexity 1 21 0 183 0 135 0 chr12 93707974 93708011 -50078444 + T-rich Low_complexity Low_complexity 5 46 0 225 0 0 0 chr12 93708970 93708995 -50077460 + (CA)n Simple_repeat Simple_repeat 2 26 0 304 268 0 37 chr12 93709078 93709160 -50077295 - MIR3 SINE MIR -16 192 114 451 305 46 8 chr12 93709246 93709377 -50077078 + MIR SINE MIR 20 155 -107 410 180 99 105 chr12 93709656 93709828 -50076627 + MER34 LTR ERV1 435 542 0 906 282 56 0 chr12 93709829 93710063 -50076392 - MIR SINE MIR -6 256 10 188 277 69 20 chr12 93710063 93710164 -50076291 + MIR SINE MIR 150 255 -7 2241 107 7 7 chr12 93710667 93710967 -50075488 + AluSx SINE Alu 1 300 -12 390 269 18 90 chr12 93710969 93711136 -50075319 + MIR SINE MIR 23 177 -85 1818 154 0 74 chr12 93711191 93711276 -50075179 + AluSx SINE Alu 3 93 -219 2707 42 0 0 chr12 93711276 93711587 -50074868 + AluY SINE Alu 1 311 0 1818 154 0 74 chr12 93711587 93711826 -50074629 + AluSx SINE Alu 93 303 -9 793 242 64 23 chr12 93711986 93712205 -50074250 - MIR SINE MIR -28 234 7 613 260 18 85 chr12 93712411 93712634 -50073821 - MIR SINE MIR -40 222 15 312 282 19 29 chr12 93714011 93714114 -50072341 - MER5A DNA MER1_type -2 187 86 308 276 138 0 chr12 93714114 93714266 -50072189 - MLT1K LTR MaLR -274 314 142 331 303 139 52 chr12 93714310 93714353 -50072102 + MLT1J LTR MaLR 26 64 -447 417 139 13 0 chr12 93714353 93714432 -50072023 + MADE1 DNA Mariner 1 80 0 331 303 139 52 chr12 93714432 93714834 -50071621 + MLT1J LTR MaLR 64 510 -1 191 150 50 0 chr12 93715192 93715232 -50071223 + MIR SINE MIR 102 143 -119 297 217 208 19 chr12 93715286 93715392 -50071063 - MER91C DNA MER1_type -1 139 14 908 283 63 30 chr12 93715437 93716067 -50070388 + L1ME3A LINE L1 5224 5873 -297 25 31 0 0 chr12 93716076 93716108 -50070347 + AT_rich Low_complexity Low_complexity 1 32 0 2475 74 0 0 chr12 93716137 93716435 -50070020 - AluSc SINE Alu -11 298 1 1219 245 199 26 chr12 93716644 93716823 -50069632 + MLT1G1 LTR MaLR 1 148 -447 180 0 0 0 chr12 93716823 93716843 -50069612 + (TC)n Simple_repeat Simple_repeat 2 21 0 1219 245 199 26 chr12 93716843 93717170 -50069285 + MLT1G1 LTR MaLR 148 595 0 205 228 18 0 chr12 93718616 93718673 -50067782 + MIR SINE MIR 91 148 -114 496 189 196 14 chr12 93718834 93718982 -50067473 + MIR SINE MIR 85 259 -3 287 380 0 23 chr12 93719081 93719210 -50067245 - MIR SINE MIR -57 151 26 208 250 0 0 chr12 93720348 93720392 -50066063 + A-rich Low_complexity Low_complexity 3 46 0 318 351 18 12 chr12 93728593 93728758 -50057697 + MIR SINE MIR 28 193 -69 316 193 93 43 chr12 93729720 93729860 -50056595 - L2 LINE L2 -50 3263 3117 300 53 0 0 chr12 93730265 93730303 -50056152 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr12 93730375 93730397 -50056058 + AT_rich Low_complexity Low_complexity 1 22 0 551 264 90 15 chr12 93732504 93732705 -50053750 + MIR SINE MIR 15 230 -32 1870 158 30 7 chr12 93732727 93732738 -50053717 - AluSx SINE Alu -2 310 301 201 74 0 0 chr12 93732738 93732765 -50053690 + (CA)n Simple_repeat Simple_repeat 2 28 0 1870 158 30 7 chr12 93732765 93733056 -50053399 - AluSx SINE Alu -11 301 1 2320 68 0 62 chr12 93733900 93734222 -50052233 + AluY SINE Alu 1 302 -9 1930 204 168 12 chr12 93734346 93734835 -50051620 - MLT1E2 LTR MaLR -57 569 5 471 190 61 74 chr12 93734837 93735000 -50051455 + L1ME2 LINE L1 5976 6136 -26 785 205 86 0 chr12 93735237 93735388 -50051067 - MER21B LTR ERV1 -372 491 328 2305 88 3 19 chr12 93735520 93735827 -50050628 - AluSp SINE Alu -11 302 1 476 275 7 29 chr12 93736301 93736439 -50050016 - MER5B DNA MER1_type -38 140 6 244 237 127 69 chr12 93736528 93736701 -50049754 - MER5A DNA MER1_type 0 189 7 275 330 109 47 chr12 93737397 93737673 -50048782 - L2 LINE L2 -425 2889 2597 1811 230 54 52 chr12 93739705 93740257 -50046198 - L1MC/D LINE L1 -749 5397 5260 1783 143 14 21 chr12 93740683 93740962 -50045493 + AluJo SINE Alu 1 277 -35 1694 139 84 15 chr12 93740962 93741234 -50045221 - AluSx SINE Alu -20 292 1 701 144 8 0 chr12 93741249 93741381 -50045074 + GA-rich Low_complexity Low_complexity 3 135 0 202 239 0 0 chr12 93742999 93743045 -50043410 + T-rich Low_complexity Low_complexity 1 46 0 276 228 228 20 chr12 93745192 93745341 -50041114 + MIR SINE MIR 33 212 -50 391 284 43 0 chr12 93745702 93745843 -50040612 + MIR SINE MIR 116 262 0 199 301 14 41 chr12 93745970 93746043 -50040412 - L2 LINE L2 0 3272 3202 2310 110 0 3 chr12 93746992 93747301 -50039154 + AluSq SINE Alu 1 308 -5 2142 122 0 7 chr12 93748290 93748593 -50037862 + AluSx SINE Alu 3 303 -9 2504 67 0 0 chr12 93748943 93749242 -50037213 - AluSc SINE Alu -10 299 1 326 313 82 5 chr12 93749999 93750194 -50036261 + L2 LINE L2 2445 2654 -660 2581 68 0 3 chr12 93751025 93751334 -50035121 - AluY SINE Alu -3 308 1 195 308 0 13 chr12 93751502 93751580 -50034875 + MIR SINE MIR 75 151 -111 2401 97 0 0 chr12 93752096 93752407 -50034048 + AluY SINE Alu 1 311 0 271 193 133 24 chr12 93753085 93753168 -50033287 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 93753986 93754091 -50032364 + CT-rich Low_complexity Low_complexity 2 109 0 2367 101 0 0 chr12 93754159 93754457 -50031998 - AluSq SINE Alu -15 298 1 294 239 257 9 chr12 93754463 93754572 -50031883 - L2 LINE L2 0 3272 3137 317 168 134 26 chr12 93754926 93755022 -50031433 - MIR SINE MIR -62 146 43 1621 184 0 14 chr12 93755494 93755771 -50030684 + AluJo SINE Alu 1 273 -39 180 0 0 0 chr12 93755773 93755793 -50030662 + (TC)n Simple_repeat Simple_repeat 2 21 0 724 318 12 8 chr12 93755872 93756127 -50030328 - MIR SINE MIR 0 262 7 204 235 0 0 chr12 93756624 93756675 -50029780 + T-rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr12 93757561 93757586 -50028869 + AT_rich Low_complexity Low_complexity 1 25 0 2150 198 45 35 chr12 93758450 93758960 -50027495 + L1MC3 LINE L1 7271 7785 0 2089 132 0 0 chr12 93758966 93759255 -50027200 + AluJb SINE Alu 17 305 -7 425 333 26 11 chr12 93759942 93760131 -50026324 + MIR SINE MIR 61 252 -10 24 0 0 0 chr12 93760353 93760377 -50026078 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr12 93761183 93761216 -50025239 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1706 157 0 29 chr12 93761217 93761498 -50024957 - AluJb SINE Alu -33 279 7 2300 106 0 10 chr12 93761655 93761967 -50024488 - AluSc SINE Alu 0 309 1 281 315 78 42 chr12 93762016 93762375 -50024080 - L1ME4a LINE L1 -54 6067 5696 2303 78 3 0 chr12 93762389 93762697 -50023758 - AluSp SINE Alu 0 309 1 2162 113 7 0 chr12 93763017 93763308 -50023147 - AluSx SINE Alu -19 293 1 490 290 83 28 chr12 93764547 93764764 -50021691 - L2 LINE L2 -28 3244 3016 2426 88 0 7 chr12 93766493 93766800 -50019655 + AluSc SINE Alu 1 305 -4 196 227 60 0 chr12 93767532 93767600 -50018855 - MIR3 SINE MIR -32 176 101 358 247 65 0 chr12 93767729 93767822 -50018633 - MER96B DNA MER1_type? -1 416 318 * 927 164 57 93 chr12 93767792 93767963 -50018492 + MER96B DNA MER1_type? 130 291 -126 2204 101 3 0 chr12 93767963 93768271 -50018184 + AluSg SINE Alu 1 309 0 927 164 57 93 chr12 93768271 93768377 -50018078 + MER96B DNA MER1_type? 291 399 -18 2365 75 0 0 chr12 93768959 93769272 -50017183 + AluY SINE Alu 1 313 0 282 289 33 25 chr12 93769355 93769476 -50016979 + MER91C DNA MER1_type 15 136 -4 183 129 0 0 chr12 93769695 93769726 -50016729 + (TG)n Simple_repeat Simple_repeat 2 32 0 2233 124 0 3 chr12 93769804 93770110 -50016345 + AluSg SINE Alu 1 305 -5 977 253 88 88 chr12 93770110 93770262 -50016193 - L2 LINE L2 -1461 1853 1702 719 192 0 0 chr12 93770262 93770392 -50016063 - FLAM_A SINE Alu -3 130 1 977 253 88 88 chr12 93770392 93770726 -50015729 - L2 LINE L2 -1611 1703 1367 1885 137 63 0 chr12 93770826 93771096 -50015359 - AluSx SINE Alu -25 287 1 376 289 108 13 chr12 93771102 93771303 -50015152 + L1ME LINE L1 5553 5772 -349 2391 93 0 3 chr12 93771480 93771781 -50014674 + AluSc SINE Alu 1 300 -9 2112 217 73 49 chr12 93772106 93772556 -50013899 + L1MC4 LINE L1 6126 6016 -226 2391 69 7 26 chr12 93772556 93772862 -50013593 - AluY SINE Alu -11 300 1 2112 217 73 49 chr12 93772862 93773096 -50013359 + L1MC4 LINE L1 6015 6242 0 1713 189 0 10 chr12 93773249 93773540 -50012915 - AluJo SINE Alu -24 288 1 246 258 110 58 chr12 93774175 93774330 -50012125 - MLT1K LTR MaLR -91 497 335 255 261 14 29 chr12 93774410 93774479 -50011976 - MLT1L LTR MaLR -417 198 131 2265 98 10 3 chr12 93774739 93775046 -50011409 + AluSc SINE Alu 1 309 0 297 51 0 0 chr12 93775924 93775963 -50010492 + (CA)n Simple_repeat Simple_repeat 1 39 0 2566 95 11 0 chr12 93775971 93776328 -50010127 - L1PA14 LINE L1 -9 6152 5792 1321 133 176 31 chr12 93776338 93776593 -50009862 - AluSg SINE Alu -18 292 1 2228 109 3 0 chr12 93776605 93776899 -50009556 - AluSx SINE Alu -17 295 1 266 293 165 25 chr12 93777269 93777443 -50009012 - L3 LINE CR1 -81 1496 1277 2309 104 3 0 chr12 93777443 93777741 -50008714 + AluSp SINE Alu 1 299 -14 266 293 165 25 chr12 93777741 93777808 -50008647 - L3 LINE CR1 -300 1277 1221 204 246 15 15 chr12 93778414 93778479 -50007976 - L3 LINE CR1 -335 1242 1178 1318 113 0 0 chr12 93778953 93779121 -50007334 + AluSx SINE Alu 1 168 -144 1396 174 17 30 chr12 93779267 93779565 -50006890 + AluJo SINE Alu 1 294 -18 253 288 0 0 chr12 93779695 93779768 -50006687 - MLT1J2 LTR MaLR -308 142 70 21 0 0 0 chr12 93780379 93780400 -50006055 + AT_rich Low_complexity Low_complexity 1 21 0 257 150 0 0 chr12 93780416 93780456 -50005999 - Charlie8 DNA MER1_type -2255 162 123 2305 100 0 6 chr12 93780456 93780767 -50005688 + AluSx SINE Alu 1 309 -3 326 313 82 5 chr12 93781598 93781793 -50004662 - L2 LINE L2 -660 2654 2445 2479 70 0 0 chr12 93782552 93782851 -50003604 + AluSc SINE Alu 1 299 -10 525 295 102 11 chr12 93782988 93783378 -50003077 - L2 LINE L2 -172 3141 2712 4776 207 63 4 chr12 93783479 93784461 -50001994 - MER45B DNA AcHobo 0 1040 1 768 40 0 0 chr12 93785018 93785118 -50001337 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 505 328 66 0 chr12 93785476 93785659 -50000796 + MER115 DNA AcHobo 3 197 -496 205 222 19 0 chr12 93785966 93786020 -50000435 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 483 332 68 4 chr12 93786783 93787018 -49999437 - MIR SINE MIR -11 251 2 376 287 73 24 chr12 93787092 93787241 -49999214 - MIR3 SINE MIR -41 167 12 690 151 50 0 chr12 93787616 93787735 -49998720 - MSTD LTR MaLR 0 396 272 467 241 26 0 chr12 93788068 93788184 -49998271 - MLT1H LTR MaLR 0 549 431 544 263 67 67 chr12 93788226 93788512 -49997943 + MLT1H LTR MaLR 5 293 -256 2284 84 19 10 chr12 93788512 93788820 -49997635 + AluSp SINE Alu 2 312 -1 544 263 67 67 chr12 93788820 93788849 -49997606 + MLT1H LTR MaLR 292 320 -229 252 241 0 0 chr12 93789942 93789996 -49996459 + MLT1G LTR MaLR 537 590 0 323 297 45 45 chr12 93790663 93790818 -49995637 - MER103 DNA DNA -9 157 3 2195 52 0 0 chr12 93791079 93791328 -49995127 + AluY SINE Alu 39 287 -24 709 242 64 23 chr12 93791504 93791723 -49994732 - MIR SINE MIR -28 234 7 544 265 18 85 chr12 93791929 93792152 -49994303 - MIR SINE MIR -40 222 15 200 282 19 68 chr12 93793529 93793632 -49992823 + MER5A DNA MER1_type 17 114 -75 354 276 138 0 chr12 93793632 93793784 -49992671 - MLT1K LTR MaLR -274 314 142 473 303 139 52 chr12 93793828 93793871 -49992584 + MLT1J LTR MaLR 26 64 -447 429 139 13 0 chr12 93793871 93793950 -49992505 + MADE1 DNA Mariner 1 80 0 473 303 139 52 chr12 93793950 93794352 -49992103 + MLT1J LTR MaLR 64 510 -1 244 221 232 0 chr12 93794803 93794898 -49991557 - MER91C DNA MER1_type -1 139 23 908 283 63 30 chr12 93794954 93795584 -49990871 + L1ME2 LINE L1 5224 5873 -297 25 31 0 0 chr12 93795593 93795625 -49990830 + AT_rich Low_complexity Low_complexity 1 32 0 2475 74 0 0 chr12 93795654 93795952 -49990503 - AluSc SINE Alu -11 298 1 1219 245 199 26 chr12 93796161 93796340 -49990115 + MLT1G1 LTR MaLR 1 148 -447 198 0 0 0 chr12 93796340 93796362 -49990093 + (TC)n Simple_repeat Simple_repeat 2 23 0 1219 245 199 26 chr12 93796362 93796689 -49989766 + MLT1G1 LTR MaLR 148 595 0 205 228 18 0 chr12 93798135 93798192 -49988263 + MIR SINE MIR 91 148 -114 525 176 196 14 chr12 93798353 93798501 -49987954 + MIR SINE MIR 85 259 -3 287 380 0 23 chr12 93798600 93798729 -49987726 - MIR SINE MIR -57 151 26 225 269 0 0 chr12 93799865 93799917 -49986538 + A-rich Low_complexity Low_complexity 5 56 0 318 351 18 12 chr12 93808138 93808303 -49978152 + MIR SINE MIR 28 193 -69 316 193 93 43 chr12 93809265 93809405 -49977050 - L2 LINE L2 -50 3263 3117 300 53 0 0 chr12 93809810 93809848 -49976607 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr12 93809920 93809942 -49976513 + AT_rich Low_complexity Low_complexity 1 22 0 551 264 90 15 chr12 93812048 93812249 -49974206 + MIR SINE MIR 15 230 -32 1939 162 10 7 chr12 93812271 93812282 -49974173 - AluSx SINE Alu -2 310 301 201 74 0 0 chr12 93812282 93812309 -49974146 + (CA)n Simple_repeat Simple_repeat 2 28 0 1939 162 10 7 chr12 93812309 93812606 -49973849 - AluSx SINE Alu -11 301 1 2336 65 0 65 chr12 93813450 93813774 -49972681 + AluY SINE Alu 1 303 -8 1942 203 168 12 chr12 93813898 93814387 -49972068 - MLT1E2 LTR MaLR -57 569 5 471 190 61 74 chr12 93814389 93814552 -49971903 + L1ME2 LINE L1 5976 6136 -26 785 205 86 0 chr12 93814789 93814940 -49971515 - MER21B LTR ERV1 -372 491 328 2281 91 3 19 chr12 93815071 93815378 -49971077 - AluSp SINE Alu -11 302 1 476 275 7 29 chr12 93815852 93815990 -49970465 - MER5B DNA MER1_type -38 140 6 244 237 127 69 chr12 93816079 93816252 -49970203 - MER5A DNA MER1_type 0 189 7 349 330 109 47 chr12 93816948 93817224 -49969231 - L2 LINE L2 -425 2889 2597 1766 230 58 56 chr12 93819256 93819808 -49966647 - L1MC/D LINE L1 -749 5397 5260 2081 104 0 4 chr12 93820249 93820565 -49965890 + AluSx SINE Alu 14 328 0 1654 182 30 14 chr12 93820932 93821229 -49965226 + AluJo SINE Alu 1 302 -10 1740 154 0 4 chr12 93821229 93821502 -49964953 + AluSq SINE Alu 1 272 -41 707 99 0 9 chr12 93821509 93821620 -49964835 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2277 88 10 3 chr12 93821737 93822031 -49964424 - AluSx SINE Alu -16 296 1 252 122 0 0 chr12 93822056 93822097 -49964358 + (A)n Simple_repeat Simple_repeat 1 41 0 10842 95 2 7 chr12 93823069 93823722 -49962733 - L1P LINE L1 -1418 4728 4074 2554 55 3 3 chr12 93823722 93824030 -49962425 - AluY SINE Alu -3 308 1 10842 95 2 7 chr12 93824030 93824889 -49961566 - L1P LINE L1 -2072 4074 3223 7248 60 7 23 chr12 93824890 93825641 -49960814 + L1PA7 LINE L1 4739 5463 -691 2489 57 0 7 chr12 93825641 93825941 -49960514 + AluY SINE Alu 1 298 -13 7248 60 7 23 chr12 93825941 93826621 -49959834 + L1PA7 LINE L1 5463 6153 -1 319 226 118 54 chr12 93826784 93826877 -49959578 + MER102b DNA MER1_type 3 101 -240 561 178 0 0 chr12 93826892 93826982 -49959473 + AluS SINE Alu 2 91 -221 681 256 23 12 chr12 93827552 93827724 -49958731 - MER5B DNA MER1_type -3 175 2 858 145 0 0 chr12 93828493 93828610 -49957845 + AluJo/FLAM SINE Alu 1 117 -195 681 168 0 0 chr12 93828612 93828719 -49957736 - FLAM_C SINE Alu -8 135 29 204 40 0 0 chr12 93828729 93828754 -49957701 + (CAA)n Simple_repeat Simple_repeat 3 27 0 888 195 0 0 chr12 93828757 93828916 -49957539 + FRAM SINE Alu 1 154 -22 255 227 0 0 chr12 93828916 93828960 -49957495 + L2 LINE L2 3211 3254 -18 227 189 0 0 chr12 93828927 93828964 -49957491 + MIR SINE MIR 218 254 -8 * 1042 238 116 48 chr12 93829058 93829584 -49956871 + L1MC5 LINE L1 6970 7531 -430 254 315 65 26 chr12 93829643 93829875 -49956580 + L1ME3A LINE L1 5925 6165 -5 213 94 0 0 chr12 93829978 93830010 -49956445 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 355 271 93 9 chr12 93830066 93830173 -49956282 - MIR SINE MIR -30 232 117 799 233 41 0 chr12 93832275 93832447 -49954008 - MER5A DNA MER1_type -8 181 3 22 0 0 0 chr12 93832590 93832612 -49953843 + AT_rich Low_complexity Low_complexity 1 22 0 1362 236 158 54 chr12 93832645 93833014 -49953441 + L2 LINE L2 2247 2576 -737 2539 142 55 14 chr12 93833014 93833429 -49953026 - MSTB1 LTR MaLR 0 432 1 1362 236 158 54 chr12 93833429 93833868 -49952587 + L2 LINE L2 2576 3150 -163 1614 186 71 21 chr12 93834400 93834739 -49951716 - MER93b LTR ERV1 -17 356 1 737 236 124 23 chr12 93835095 93835353 -49951102 + MER102b DNA MER1_type 33 316 -25 296 264 124 16 chr12 93835739 93835860 -49950595 + L2 LINE L2 3180 3313 0 379 304 206 5 chr12 93836035 93836249 -49950206 + MIR SINE MIR 6 262 0 2505 71 0 3 chr12 93836256 93836564 -49949891 - AluY SINE Alu -4 307 1 204 320 0 13 chr12 93836732 93836810 -49949645 + MIR SINE MIR 75 151 -111 2349 100 0 0 chr12 93837326 93837637 -49948818 + AluY SINE Alu 1 311 0 273 193 133 24 chr12 93838315 93838398 -49948057 + LTR67 LTR ERVL 437 528 -29 306 219 29 0 chr12 93839216 93839321 -49947134 + CT-rich Low_complexity Low_complexity 2 109 0 2346 101 0 0 chr12 93839389 93839687 -49946768 - AluSq SINE Alu -15 298 1 333 239 257 9 chr12 93839693 93839802 -49946653 - L2 LINE L2 0 3272 3137 341 166 134 26 chr12 93840156 93840250 -49946205 - MIR SINE MIR -62 146 45 1590 189 0 7 chr12 93840725 93841000 -49945455 + AluJo SINE Alu 1 273 -39 180 0 0 0 chr12 93841002 93841022 -49945433 + (TC)n Simple_repeat Simple_repeat 2 21 0 810 314 12 8 chr12 93841101 93841356 -49945099 - MIR SINE MIR 0 262 7 201 250 59 29 chr12 93841386 93841454 -49945001 - MIR3 SINE MIR -51 157 88 213 231 0 0 chr12 93841853 93841905 -49944550 + T-rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr12 93842791 93842815 -49943640 + AT_rich Low_complexity Low_complexity 1 24 0 2171 198 45 35 chr12 93843679 93844189 -49942266 + L1MC3 LINE L1 7271 7785 0 2068 132 0 0 chr12 93844195 93844483 -49941972 + AluJb SINE Alu 17 304 -8 473 333 26 11 chr12 93845170 93845359 -49941096 + MIR SINE MIR 61 252 -10 24 0 0 0 chr12 93845581 93845605 -49940850 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr12 93846411 93846444 -49940011 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1683 157 0 25 chr12 93846445 93846725 -49939730 - AluJb SINE Alu -33 279 7 225 261 81 43 chr12 93846763 93846882 -49939573 - L1ME4a LINE L1 -16 6105 5977 2279 106 0 10 chr12 93846882 93847194 -49939261 - AluSc SINE Alu 0 309 1 225 261 81 43 chr12 93847194 93847235 -49939220 - L1ME4a LINE L1 -144 5977 5939 334 315 75 39 chr12 93847243 93847602 -49938853 - L1ME4a LINE L1 -54 6067 5696 2276 78 3 0 chr12 93847616 93847924 -49938531 - AluSp SINE Alu 0 309 1 2137 113 7 0 chr12 93848244 93848535 -49937920 - AluSx SINE Alu -19 293 1 556 303 83 25 chr12 93849774 93850015 -49936440 - L2 LINE L2 -28 3244 2990 2398 88 0 7 chr12 93851720 93852026 -49934429 + AluSc SINE Alu 1 304 -5 188 315 79 22 chr12 93852189 93852278 -49934177 + L2 LINE L2 3197 3290 -23 214 216 95 19 chr12 93852734 93852826 -49933629 - MIR3 SINE MIR -5 203 101 181 255 43 0 chr12 93852856 93852903 -49933552 - L2 LINE L2 -93 3220 3172 519 245 224 64 chr12 93852955 93853189 -49933266 - MER96B DNA MER1_type? -1 416 221 2221 101 0 0 chr12 93853189 93853498 -49932957 + AluSg SINE Alu 1 309 0 519 245 224 64 chr12 93853498 93853604 -49932851 - MER96B DNA MER1_type? -196 221 19 2336 75 0 0 chr12 93854186 93854499 -49931956 + AluY SINE Alu 1 313 0 319 289 33 25 chr12 93854582 93854703 -49931752 - MER91C DNA MER1_type -14 126 5 183 129 0 0 chr12 93854922 93854953 -49931502 + (TG)n Simple_repeat Simple_repeat 2 32 0 2218 124 0 3 chr12 93855031 93855337 -49931118 + AluSg SINE Alu 1 305 -5 1112 261 80 81 chr12 93855337 93855489 -49930966 - L2 LINE L2 -1461 1853 1702 771 192 0 0 chr12 93855489 93855619 -49930836 - FLAM_A SINE Alu -3 130 1 1112 261 80 81 chr12 93855619 93856009 -49930446 - L2 LINE L2 -1612 1702 1258 1865 137 63 0 chr12 93856053 93856323 -49930132 - AluSx SINE Alu -25 287 1 385 279 109 12 chr12 93856365 93856530 -49929925 + L1ME LINE L1 5592 5772 -349 2169 109 0 3 chr12 93856707 93857000 -49929455 + AluSc SINE Alu 1 292 -17 1287 137 176 31 chr12 93857012 93857267 -49929188 + AluSg SINE Alu 1 292 -18 704 197 6 27 chr12 93857277 93857460 -49928995 + L1PA14 LINE L1 5792 5970 -191 1867 104 26 4 chr12 93858020 93858288 -49928167 + AluSg SINE Alu 1 274 -36 2437 72 7 0 chr12 93858370 93858674 -49927781 + AluY SINE Alu 1 306 -5 1372 298 24 10 chr12 93858677 93859261 -49927194 + L1P LINE L1 4075 4666 -1480 229 141 203 31 chr12 93859376 93859440 -49927015 - MER96B DNA MER1_type? -8 167 93 * 327 193 12 24 chr12 93859416 93859499 -49926956 + MER96 DNA MER1_type? 91 172 -3 210 71 0 0 chr12 93860686 93860714 -49925741 + (A)n Simple_repeat Simple_repeat 1 28 0 1977 123 0 18 chr12 93860790 93861075 -49925380 - AluSx SINE Alu -32 280 1 319 226 118 54 chr12 93861089 93861182 -49925273 - MER102b DNA MER1_type -240 101 3 7377 57 6 3 chr12 93861345 93862024 -49924431 - L1PA7 LINE L1 -1 6153 5478 2503 53 0 7 chr12 93862024 93862324 -49924131 - AluY SINE Alu -13 298 1 7377 57 6 3 chr12 93862324 93863075 -49923380 - L1PA7 LINE L1 -676 5478 4739 10824 96 2 7 chr12 93863076 93863935 -49922520 + L1P LINE L1 3223 4074 -2072 2553 52 3 3 chr12 93863935 93864242 -49922213 + AluY SINE Alu 1 307 -4 10824 96 2 7 chr12 93864242 93864895 -49921560 + L1P LINE L1 4074 4728 -1418 261 119 0 0 chr12 93865867 93865909 -49920546 + (T)n Simple_repeat Simple_repeat 1 42 0 2268 89 10 3 chr12 93865934 93866227 -49920228 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr12 93866344 93866366 -49920089 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 395 150 0 12 chr12 93866388 93866468 -49919987 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 1705 153 0 7 chr12 93866475 93866749 -49919706 - AluSq SINE Alu -41 272 1 1664 181 30 13 chr12 93866749 93867047 -49919408 - AluJo SINE Alu -9 303 1 322 26 0 0 chr12 93867414 93867452 -49919003 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2154 110 0 3 chr12 93867452 93867743 -49918712 - AluSx SINE Alu -22 290 1 2610 46 0 0 chr12 93868912 93869219 -49917236 + AluY SINE Alu 1 307 -4 419 307 184 5 chr12 93869226 93869444 -49917011 - MIR SINE MIR 0 262 6 298 264 124 16 chr12 93869619 93869740 -49916715 - L2 LINE L2 0 3313 3180 630 244 124 23 chr12 93870126 93870384 -49916071 - MER102b DNA MER1_type -25 316 33 1462 186 71 21 chr12 93870740 93871079 -49915376 + MER93b LTR ERV1 1 356 -17 1334 237 158 54 chr12 93871611 93872050 -49914405 - L2 LINE L2 -163 3150 2758 2345 142 55 14 chr12 93872050 93872465 -49913990 + MSTB1 LTR MaLR 1 432 0 1334 237 158 54 chr12 93872465 93872834 -49913621 - L2 LINE L2 -555 2758 2247 22 0 0 0 chr12 93872867 93872889 -49913566 + AT_rich Low_complexity Low_complexity 1 22 0 798 233 41 0 chr12 93873032 93873204 -49913251 + MER5A DNA MER1_type 3 181 -8 356 271 93 9 chr12 93875307 93875414 -49911041 + MIR SINE MIR 117 232 -30 213 94 0 0 chr12 93875470 93875502 -49910953 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 401 315 65 26 chr12 93875606 93875838 -49910617 - L1ME3A LINE L1 -5 6165 5925 806 238 116 48 chr12 93875897 93876423 -49910032 - L1MC5 LINE L1 -430 7531 6970 226 189 0 0 chr12 93876517 93876554 -49909901 - MIR SINE MIR -8 254 218 * 257 227 0 0 chr12 93876521 93876565 -49909890 - L2 LINE L2 -18 3254 3211 896 195 0 0 chr12 93876565 93876724 -49909731 - FRAM SINE Alu -22 154 1 204 40 0 0 chr12 93876727 93876752 -49909703 + (TTG)n Simple_repeat Simple_repeat 3 27 0 658 159 0 0 chr12 93876762 93876869 -49909586 + FLAM_C SINE Alu 29 135 -8 863 145 0 0 chr12 93876871 93876988 -49909467 - AluJo/FLAM SINE Alu -195 117 1 589 262 23 12 chr12 93877757 93877929 -49908526 + MER5B DNA MER1_type 2 175 -3 4077 142 25 21 chr12 93879251 93879979 -49906476 + L1MB4 LINE L1 5450 6180 0 2572 210 18 21 chr12 93879998 93880096 -49906359 + L1M4 LINE L1 4343 4440 -1706 2224 114 14 0 chr12 93880096 93880393 -49906062 + AluSx SINE Alu 1 301 -11 2572 210 18 21 chr12 93880393 93880960 -49905495 + L1M4 LINE L1 4440 5006 -1140 1718 168 0 34 chr12 93880961 93881253 -49905202 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr12 93881256 93881281 -49905174 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 331 277 197 48 chr12 93881776 93882086 -49904369 + L2 LINE L2 2943 3298 -15 2398 75 0 0 chr12 93882114 93882406 -49904049 - AluY SINE Alu -19 292 1 331 329 0 0 chr12 93883488 93883570 -49902885 - L2 LINE L2 -49 3223 3142 250 322 175 42 chr12 93884244 93884387 -49902068 + L2 LINE L2 3107 3268 -4 371 397 0 7 chr12 93884835 93884976 -49901479 + L3 LINE CR1 1435 1574 -3 297 75 0 0 chr12 93884985 93885025 -49901430 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 240 90 55 chr12 93885212 93885286 -49901169 - L2 LINE L2 -3 3310 3240 2292 170 83 37 chr12 93885286 93885652 -49900803 - MLT1D LTR MaLR 0 505 110 2125 109 19 19 chr12 93885652 93885964 -49900491 + AluSx SINE Alu 1 312 0 2292 170 83 37 chr12 93885964 93886080 -49900375 - MLT1D LTR MaLR -395 110 1 480 240 90 55 chr12 93886080 93886205 -49900250 - L2 LINE L2 -73 3240 3104 1435 246 201 17 chr12 93886235 93886942 -49899513 - L2 LINE L2 -931 2383 1547 636 314 187 0 chr12 93886943 93887274 -49899181 - L2 LINE L2 -2080 1234 842 21 0 0 0 chr12 93888634 93888655 -49897800 + AT_rich Low_complexity Low_complexity 1 21 0 2328 118 0 0 chr12 93888727 93889031 -49897424 - AluSx SINE Alu -8 304 1 2203 126 0 25 chr12 93889484 93889801 -49896654 - AluSc SINE Alu 0 309 1 2207 134 0 10 chr12 93889983 93890297 -49896158 + AluSx SINE Alu 2 312 0 633 339 66 20 chr12 93890497 93890889 -49895566 + L2 LINE L2 2394 2803 -511 189 273 45 0 chr12 93891259 93891303 -49895152 + L2 LINE L2 3221 3266 -6 2247 87 3 19 chr12 93891316 93891625 -49894830 + AluSx SINE Alu 1 304 -8 966 329 137 24 chr12 93891637 93891726 -49894729 + L2 LINE L2 1796 1873 -1441 2358 46 0 0 chr12 93891726 93892036 -49894419 + AluY SINE Alu 1 310 0 966 329 137 24 chr12 93892036 93892710 -49893745 + L2 LINE L2 1873 2647 -667 222 300 86 57 chr12 93892767 93892973 -49893482 + L2 LINE L2 2804 3015 -257 610 229 133 5 chr12 93892973 93893136 -49893319 - MER5A DNA MER1_type 0 189 4 2087 113 7 7 chr12 93893139 93893455 -49893000 - AluSx SINE Alu 0 316 1 221 160 100 20 chr12 93893469 93893519 -49892936 + L2 LINE L2 3007 3060 -212 355 84 22 0 chr12 93894143 93894204 -49892251 + AluSp SINE Alu 86 137 -166 38928 65 9 2 chr12 93894207 93900260 -49886195 + L1PA5 LINE L1 11 6102 -52 29 0 0 0 chr12 93901259 93901288 -49885167 + AT_rich Low_complexity Low_complexity 1 29 0 749 176 0 37 chr12 93901708 93901844 -49884611 + FLAM_C SINE Alu 1 131 -2 446 174 35 0 chr12 93902940 93903055 -49883400 + L1MA8 LINE L1 6173 6291 0 323 281 95 25 chr12 93903094 93903379 -49883076 + L1M4 LINE L1 4513 4817 -1329 2189 130 0 0 chr12 93903757 93904056 -49882399 - AluSg SINE Alu -11 299 1 24 0 0 0 chr12 93904258 93904282 -49882173 + AT_rich Low_complexity Low_complexity 1 24 0 256 281 12 0 chr12 93904314 93904396 -49882059 - L1ME LINE L1 -396 5725 5643 486 205 192 26 chr12 93904401 93904635 -49881820 - LTR50 LTR ERVL 0 795 523 1155 228 18 7 chr12 93907806 93908087 -49878368 + L2 LINE L2 2480 2763 -551 486 248 104 62 chr12 93908112 93908419 -49878036 + L2 LINE L2 2946 3265 -48 2175 128 0 10 chr12 93908604 93908916 -49877539 + AluSx SINE Alu 3 311 -1 351 0 0 0 chr12 93909557 93909596 -49876859 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1927 133 0 0 chr12 93909607 93909871 -49876584 - AluSx SINE Alu -48 264 1 180 0 0 0 chr12 93911158 93911178 -49875277 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 367 192 26 0 chr12 93911224 93911302 -49875153 + MER116 DNA Mariner 1 80 0 249 220 0 0 chr12 93911832 93911882 -49874573 - L2 LINE L2 -4 3268 3219 22 35 0 0 chr12 93911900 93911929 -49874526 + AT_rich Low_complexity Low_complexity 1 29 0 1601 30 0 5 chr12 93912777 93912974 -49873481 + L1PA4 LINE L1 5960 6155 0 386 294 66 20 chr12 93913388 93913585 -49872870 + L1ME3A LINE L1 3713 3918 -2228 * 509 296 164 21 chr12 93913584 93913919 -49872536 + L1ME3A LINE L1 4127 4509 -1637 437 283 22 59 chr12 93914061 93914333 -49872122 + L1ME3A LINE L1 5690 5951 -219 21 0 0 0 chr12 93914440 93914461 -49871994 + AT_rich Low_complexity Low_complexity 1 21 0 1376 78 122 0 chr12 93914586 93914791 -49871664 + MER30 DNA MER1_type 1 230 0 280 284 37 46 chr12 93915847 93915956 -49870499 + L3 LINE CR1 1367 1474 -103 379 336 57 8 chr12 93916079 93916201 -49870254 + L2 LINE L2 3144 3271 -1 550 266 165 0 chr12 93916224 93916412 -49870043 + MIR SINE MIR 2 220 -42 23 0 0 0 chr12 93916655 93916678 -49869777 + AT_rich Low_complexity Low_complexity 1 23 0 2387 99 0 0 chr12 93918034 93918336 -49868119 - AluSg SINE Alu -8 302 1 373 283 106 89 chr12 93920519 93920812 -49865643 + MARNA DNA Mariner 28 325 -261 26 30 0 0 chr12 93921447 93921480 -49864975 + AT_rich Low_complexity Low_complexity 1 33 0 264 358 0 0 chr12 93921795 93921876 -49864579 - L2 LINE L2 -674 2640 2560 1852 128 46 39 chr12 93922533 93922839 -49863616 + AluSx SINE Alu 1 308 -4 2016 119 19 16 chr12 93923412 93923722 -49862733 - AluSx SINE Alu -1 311 1 42 0 0 0 chr12 93923847 93923889 -49862566 + AT_rich Low_complexity Low_complexity 1 42 0 352 251 211 5 chr12 93924552 93924694 -49861761 + MIR SINE MIR 74 241 -21 2310 109 0 3 chr12 93925315 93925618 -49860837 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 93926636 93926657 -49859798 + AT_rich Low_complexity Low_complexity 1 21 0 2093 115 37 0 chr12 93926941 93927237 -49859218 + AluSx SINE Alu 3 309 -3 2304 100 0 3 chr12 93927473 93927774 -49858681 + AluSx SINE Alu 1 300 -12 716 293 42 4 chr12 93928023 93928262 -49858193 - MIR SINE MIR -7 255 8 217 256 0 0 chr12 93928437 93928480 -49857975 - L2 LINE L2 -71 3242 3200 393 287 64 43 chr12 93928503 93928691 -49857764 - L2 LINE L2 -4 3309 3118 1889 157 33 0 chr12 93929458 93929757 -49856698 - AluJb SINE Alu -3 309 1 1784 137 44 0 chr12 93929977 93930248 -49856207 + AluSx SINE Alu 1 283 -29 645 49 0 0 chr12 93930248 93930329 -49856126 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 354 281 50 22 chr12 93930560 93930699 -49855756 + MIR3 SINE MIR 45 187 -21 449 294 67 78 chr12 93930930 93931212 -49855243 + L2 LINE L2 2237 2515 -799 325 282 80 99 chr12 93931232 93931628 -49854827 + L2 LINE L2 2659 3061 -211 447 19 0 0 chr12 93931628 93931680 -49854775 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 1924 128 0 31 chr12 93931680 93931969 -49854486 - AluSx SINE Alu -32 280 1 325 282 80 99 chr12 93931969 93932112 -49854343 + L2 LINE L2 3059 3257 -15 663 171 16 8 chr12 93932173 93932296 -49854159 + L1MB2 LINE L1 6041 6164 -7 1495 202 0 0 chr12 93933681 93933939 -49852516 - AluJb SINE Alu -6 306 49 1882 129 13 40 chr12 93933976 93934146 -49852309 - AluSx SINE Alu -13 299 139 2487 66 7 3 chr12 93934146 93934450 -49852005 - AluY SINE Alu -6 305 1 1882 129 13 40 chr12 93934450 93934582 -49851873 - AluSx SINE Alu -173 139 5 773 65 0 0 chr12 93934622 93934714 -49851741 - AluS SINE Alu -210 102 11 602 304 110 56 chr12 93934818 93935768 -49850687 + L1MEc LINE L1 32 807 -4890 * 887 266 91 15 chr12 93935766 93936172 -49850283 + L1MEc LINE L1 1084 1520 -4876 2071 158 25 22 chr12 93936211 93936348 -49850107 - MLT1A1 LTR MaLR -2 363 228 2641 92 41 24 chr12 93936348 93936473 -49849982 + THE1C LTR MaLR 1 122 -253 1990 79 97 14 chr12 93936473 93936751 -49849704 - AluSp SINE Alu -11 302 2 2641 92 41 24 chr12 93936751 93936994 -49849461 + THE1C LTR MaLR 122 375 0 2071 158 25 22 chr12 93936994 93937218 -49849237 - MLT1A1 LTR MaLR -137 228 1 1790 236 129 19 chr12 93937219 93937894 -49848561 + L1MEc LINE L1 1556 2304 -4092 518 211 196 12 chr12 93938102 93938270 -49848185 - MIR SINE MIR -52 210 16 711 284 115 10 chr12 93939469 93939782 -49846673 + L2 LINE L2 2955 3300 -13 220 343 170 13 chr12 93939782 93940082 -49846373 - L2 LINE L2 -109 3163 2817 222 37 0 0 chr12 93940428 93940455 -49846000 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 336 64 0 0 chr12 93940454 93940501 -49845954 + (CA)n Simple_repeat Simple_repeat 1 47 0 418 283 101 54 chr12 93940514 93940898 -49845557 - MLT1K LTR MaLR -113 475 17 220 297 171 45 chr12 93941479 93941590 -49844865 + L2 LINE L2 3116 3240 -32 2177 109 3 0 chr12 93942009 93942337 -49844118 - AluSx SINE Alu 0 329 1 913 264 11 23 chr12 93942709 93942970 -49843485 - MIR SINE MIR 0 262 5 272 326 94 22 chr12 93943465 93943646 -49842809 + MLT1K LTR MaLR 211 404 -184 298 241 80 45 chr12 93943767 93943879 -49842576 + MIR SINE MIR 63 178 -84 2169 128 0 13 chr12 93943890 93944195 -49842260 - AluSx SINE Alu -11 301 1 687 259 184 77 chr12 93944304 93944922 -49841533 + L2 LINE L2 2412 3147 -166 1873 134 3 7 chr12 93944922 93945205 -49841250 + AluJb SINE Alu 31 312 0 687 259 184 77 chr12 93945205 93945392 -49841063 + L2 LINE L2 3147 3313 0 539 320 82 27 chr12 93946173 93946501 -49839954 + L2 LINE L2 2323 2668 -646 188 366 0 0 chr12 93946868 93946939 -49839516 + L2 LINE L2 3186 3256 -16 1616 180 6 35 chr12 93947583 93947900 -49838555 - AluJo SINE Alu -4 308 1 248 205 196 45 chr12 93947948 93948060 -49838395 + MLT1H LTR MaLR 15 143 -406 687 224 138 73 chr12 93948129 93948595 -49837860 + MLT1H LTR MaLR 50 555 0 2415 90 63 51 chr12 93949166 93949306 -49837149 - MER1A DNA MER1_type -2173 529 392 2117 109 3 7 chr12 93949306 93949611 -49836844 - AluSx SINE Alu 0 304 1 2415 90 63 51 chr12 93949611 93949910 -49836545 - MER1A DNA MER1_type -2310 392 1 508 235 42 42 chr12 93949912 93950125 -49836330 + L1MC5 LINE L1 7726 7938 -23 870 187 49 148 chr12 93951317 93951708 -49834747 - L1MC4 LINE L1 -2 8040 7689 349 342 113 5 chr12 93952487 93952709 -49833746 - L2 LINE L2 -241 3072 2827 2073 108 16 20 chr12 93952771 93953076 -49833379 + L1PA16 LINE L1 5863 6166 0 652 260 20 10 chr12 93953233 93953429 -49833026 + L1ME3A LINE L1 4910 5107 -1039 21 0 0 0 chr12 93956586 93956607 -49829848 + AT_rich Low_complexity Low_complexity 1 21 0 7007 70 15 15 chr12 93956629 93958172 -49828283 + SVA Other Other 1 1386 0 394 271 0 60 chr12 93958196 93958362 -49828093 + L1ME3A LINE L1 5122 5277 -869 865 176 0 0 chr12 93958373 93958509 -49827946 + AluJo SINE Alu 1 136 -176 2000 238 50 14 chr12 93958510 93959011 -49827444 + L1ME3A LINE L1 5272 5790 -380 886 250 7 48 chr12 93959017 93959289 -49827166 + L1ME3A LINE L1 5901 6161 -9 1088 265 115 7 chr12 93959306 93959710 -49826745 - L2 LINE L2 -614 2700 2253 604 261 26 0 chr12 93959710 93959863 -49826592 + MIR SINE MIR 1 157 -105 424 234 288 0 chr12 93959952 93960178 -49826277 - L2 LINE L2 -1089 2225 1935 685 174 208 13 chr12 93960179 93960328 -49826127 - MER45A DNA AcHobo 0 178 1 1494 46 0 0 chr12 93960337 93960510 -49825945 + LTR30 LTR ERV1 2 174 -548 1289 144 43 23 chr12 93960589 93960846 -49825609 + AluJb SINE Alu 47 308 -4 3778 197 120 45 chr12 93961891 93962183 -49824272 - L1MC4 LINE L1 -436 7606 7337 2236 147 47 11 chr12 93962183 93962543 -49823912 + THE1C LTR MaLR 1 373 -2 3778 197 120 45 chr12 93962543 93963396 -49823059 - L1MC4 LINE L1 -705 7337 6375 2039 134 0 10 chr12 93963410 93963702 -49822753 - AluSx SINE Alu -23 289 1 312 314 67 31 chr12 93964029 93964223 -49822232 - L1MEc LINE L1 -6097 299 99 1957 121 27 10 chr12 93964308 93964606 -49821849 - AluSx SINE Alu -9 303 1 1959 124 34 7 chr12 93964693 93964984 -49821471 + AluSx SINE Alu 1 299 -13 1745 179 17 0 chr12 93965326 93965617 -49820838 + AluSx SINE Alu 1 296 -16 1219 207 15 19 chr12 93966030 93966291 -49820164 + AluJo SINE Alu 3 262 -50 591 265 53 16 chr12 93966292 93966481 -49819974 - MIR SINE MIR -55 207 12 299 323 0 20 chr12 93966563 93966662 -49819793 + MER5A DNA MER1_type 93 189 0 1115 163 0 0 chr12 93967214 93967386 -49819069 + MER1B DNA MER1_type 2 173 -124 423 111 63 0 chr12 93967374 93967437 -49819018 + MER1B DNA MER1_type 266 332 -1 * 314 268 122 0 chr12 93967441 93967523 -49818932 + MIR SINE MIR 63 154 -108 2374 119 131 28 chr12 93967604 93967950 -49818505 + MSTA LTR MaLR 1 393 -35 2343 110 3 0 chr12 93967950 93968259 -49818196 - AluSx SINE Alu -2 310 1 2374 119 131 28 chr12 93968259 93968300 -49818155 + MSTA LTR MaLR 393 428 0 360 325 76 25 chr12 93968367 93968644 -49817811 + L2 LINE L2 139 429 -2885 286 294 129 64 chr12 93968699 93968851 -49817604 - L2 LINE L2 -4 3309 3168 774 164 0 30 chr12 93968851 93968985 -49817470 - FLAM_A SINE Alu -3 130 1 286 294 129 64 chr12 93968985 93969189 -49817266 - L2 LINE L2 -145 3168 2930 * 316 319 158 36 chr12 93969173 93969731 -49816724 + L2 LINE L2 746 1371 -1943 667 277 64 13 chr12 93969732 93969967 -49816488 + L2 LINE L2 2013 2259 -1055 535 297 130 0 chr12 93969985 93970170 -49816285 + L2 LINE L2 2572 2780 -534 1322 239 140 23 chr12 93970179 93970615 -49815840 - MLT1D LTR MaLR -6 499 13 281 307 171 10 chr12 93970647 93970852 -49815603 + L2 LINE L2 2823 3060 -212 2281 120 0 0 chr12 93970902 93971203 -49815252 + AluSx SINE Alu 1 301 -11 248 321 0 71 chr12 93971294 93971406 -49815049 + L2 LINE L2 3137 3240 -32 287 79 0 0 chr12 93971656 93971694 -49814761 - MER4D LTR ERV1 -75 828 791 467 171 185 90 chr12 93972057 93972279 -49814176 - L1MB7 LINE L1 0 6184 5942 233 289 79 0 chr12 93972297 93972373 -49814082 - MIR SINE MIR -80 128 47 213 183 17 17 chr12 93973920 93973980 -49812475 + A-rich Low_complexity Low_complexity 1 60 0 2508 72 0 0 chr12 93974650 93974954 -49811501 - AluY SINE Alu -7 304 1 417 221 53 9 chr12 93975111 93975224 -49811231 - MIR3 SINE MIR -6 202 85 237 33 0 0 chr12 93975238 93975268 -49811187 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 187 219 0 0 chr12 93975270 93975311 -49811144 - L2 LINE L2 -18 3254 3214 24 53 0 0 chr12 93975863 93975901 -49810554 + AT_rich Low_complexity Low_complexity 1 38 0 214 108 0 54 chr12 93979490 93979527 -49806928 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 237 65 0 0 chr12 93980041 93980072 -49806383 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 228 304 22 89 chr12 93980775 93980910 -49805545 - MER5A DNA MER1_type -52 126 1 3975 119 35 9 chr12 93981054 93981683 -49804772 + L1MB4 LINE L1 5536 6180 0 2276 104 154 16 chr12 93981971 93982347 -49804108 + MSTA LTR MaLR 1 428 0 831 240 18 41 chr12 93982360 93982581 -49803874 - MIR SINE MIR -26 236 21 1323 40 6 29 chr12 93982582 93982757 -49803698 - AluY SINE Alu -12 299 129 1053 181 31 39 chr12 93982911 93983165 -49803290 - L1MA4A LINE L1 -270 6033 5782 269 170 0 0 chr12 93983185 93983232 -49803223 + MER4B-int LTR ERV1 1150 1196 -5562 373 88 0 35 chr12 93983239 93983296 -49803159 - L1MA4A LINE L1 -498 5793 5739 681 205 54 12 chr12 93983541 93983707 -49802748 + L1MB7 LINE L1 5959 6131 -53 680 221 72 44 chr12 93983716 93983897 -49802558 - MER5A DNA MER1_type 0 189 4 1025 132 29 86 chr12 93983925 93983944 -49802511 + L1MB3 LINE L1 5953 5972 -211 2428 90 3 0 chr12 93983944 93984254 -49802201 + AluSx SINE Alu 1 311 -1 1025 132 29 86 chr12 93984254 93984477 -49801978 + L1MB3 LINE L1 5972 6181 -2 206 238 0 0 chr12 93984685 93984727 -49801728 + L2 LINE L2 2939 2980 -333 387 0 0 0 chr12 93984980 93985023 -49801432 + (A)n Simple_repeat Simple_repeat 1 43 0 215 179 26 0 chr12 93985290 93985329 -49801126 + L2 LINE L2 3010 3049 -264 2161 137 3 29 chr12 93985333 93985676 -49800779 - MER1B DNA MER1_type -5 334 1 236 326 85 23 chr12 93985753 93985882 -49800573 + L2 LINE L2 2939 3075 -238 3585 156 84 57 chr12 93985910 93986720 -49799735 + L1MB7 LINE L1 5310 6141 -43 456 226 104 0 chr12 93986843 93986958 -49799497 + L2 LINE L2 3185 3311 -2 2344 81 3 7 chr12 93987221 93987519 -49798936 - AluSc SINE Alu -12 297 1 808 245 33 62 chr12 93987798 93988071 -49798384 - MLT1I LTR MaLR 0 409 145 1032 196 0 22 chr12 93988390 93988569 -49797886 - FAM SINE Alu 0 175 1 23 0 0 0 chr12 93988574 93988597 -49797858 + AT_rich Low_complexity Low_complexity 1 23 0 1089 189 36 0 chr12 93989350 93989546 -49796909 + MER20 DNA MER1_type 2 204 -15 302 186 17 0 chr12 93989563 93989622 -49796833 + MIR SINE MIR 197 256 -6 1899 151 3 28 chr12 93989861 93990178 -49796277 + AluSx SINE Alu 1 309 -3 321 360 37 12 chr12 93990418 93990582 -49795873 - MIR3 SINE MIR -28 180 13 214 342 13 13 chr12 93990709 93990788 -49795667 - L2 LINE L2 -6 3307 3229 265 226 10 69 chr12 93990905 93991007 -49795448 - MER53 DNA DNA -93 96 1 560 269 34 56 chr12 93991010 93991244 -49795211 - Charlie8 DNA MER1_type -2149 268 40 1408 269 90 15 chr12 93993984 93994452 -49792003 - LTR33 LTR ERVL -18 503 1 188 324 84 0 chr12 93994804 93994875 -49791580 - MIR SINE MIR -66 196 120 273 272 97 18 chr12 93995170 93995284 -49791171 + MIR SINE MIR 36 158 -104 253 331 69 6 chr12 93995566 93995726 -49790729 + MER117 DNA MER1_type 1 170 -27 464 244 11 0 chr12 93995819 93995909 -49790546 - MER81 DNA DNA 0 114 24 843 261 146 35 chr12 93996153 93996579 -49789876 - LTR33 LTR ERVL -19 502 30 395 343 61 0 chr12 93996849 93997047 -49789408 - ERVL LTR ERVL -432 5332 5123 2086 310 78 12 chr12 93997372 93997915 -49788540 - ERVL LTR ERVL -994 4660 4038 2232 154 22 19 chr12 93997915 93998279 -49788176 - MLT1A1 LTR MaLR 0 365 1 2086 310 78 12 chr12 93998279 93998596 -49787859 - ERVL LTR ERVL -1616 4038 3743 572 244 18 12 chr12 93999284 93999448 -49787007 + L1ME3A LINE L1 6006 6170 0 726 119 171 28 chr12 93999939 94000115 -49786340 - AluY SINE Alu -109 202 2 23 0 0 0 chr12 94000928 94000951 -49785504 + AT_rich Low_complexity Low_complexity 1 23 0 514 200 0 0 chr12 94000956 94001041 -49785414 - FLAM_A SINE Alu -45 97 13 501 333 6 6 chr12 94001193 94001355 -49785100 + MER5A DNA MER1_type 28 189 0 303 338 35 14 chr12 94001736 94001881 -49784574 + L2 LINE L2 3165 3312 -1 894 132 28 0 chr12 94001982 94002126 -49784329 - L1MA4A LINE L1 -7 6296 6149 1048 125 7 7 chr12 94002281 94002433 -49784022 + AluSg/x SINE Alu 129 280 -32 2281 100 0 6 chr12 94002509 94002820 -49783635 - AluSx SINE Alu -3 309 1 260 150 0 0 chr12 94002820 94002860 -49783595 + Charlie8 DNA MER1_type 123 162 -2255 21 0 0 0 chr12 94002876 94002897 -49783558 + AT_rich Low_complexity Low_complexity 1 21 0 247 253 10 71 chr12 94003508 94003607 -49782848 + MLT1J LTR MaLR 108 200 -311 1381 182 24 40 chr12 94003711 94004008 -49782447 - AluJo SINE Alu -18 294 3 22 35 0 0 chr12 94004096 94004125 -49782330 + AT_rich Low_complexity Low_complexity 1 29 0 2043 280 127 33 chr12 94004412 94005539 -49780916 - L2 LINE L2 -26 3287 2058 243 158 0 105 chr12 94005676 94005733 -49780722 + L2 LINE L2 3259 3309 -4 765 297 74 43 chr12 94005952 94006369 -49780086 + L2 LINE L2 2884 3313 0 342 318 26 32 chr12 94007684 94007838 -49778617 + L1ME1 LINE L1 1 153 -6387 910 264 129 56 chr12 94008529 94009026 -49777429 + L1ME1 LINE L1 923 1455 -5088 2221 131 0 3 chr12 94009026 94009332 -49777123 + AluSg SINE Alu 1 305 -5 760 253 113 19 chr12 94009335 94009699 -49776756 + L1ME1 LINE L1 1933 2330 -4210 1632 220 80 109 chr12 94009701 94009974 -49776481 + L1ME1 LINE L1 3354 3633 -2907 2186 112 10 0 chr12 94009974 94010269 -49776186 + AluSp SINE Alu 1 298 -15 1632 220 80 109 chr12 94010269 94010951 -49775504 + L1ME1 LINE L1 3633 4281 -2259 * 3051 214 41 38 chr12 94010947 94011825 -49774630 + L1ME1 LINE L1 5374 6252 -308 2594 124 22 0 chr12 94011825 94012181 -49774274 - THE1B LTR MaLR 0 364 1 3051 214 41 38 chr12 94012181 94012415 -49774040 + L1ME1 LINE L1 6252 6484 -76 1234 197 98 0 chr12 94012469 94012723 -49773732 + AluJo SINE Alu 1 279 -33 2136 130 3 0 chr12 94012799 94013099 -49773356 - AluSx SINE Alu -11 301 1 216 0 0 0 chr12 94013637 94013661 -49772794 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1928 138 34 10 chr12 94014110 94014408 -49772047 + AluSx SINE Alu 1 305 -7 255 310 56 99 chr12 94015133 94015202 -49771253 + MIR SINE MIR 15 76 -186 1393 186 9 75 chr12 94015202 94015520 -49770935 - AluJo SINE Alu -15 297 1 255 310 56 99 chr12 94015520 94015592 -49770863 + MIR SINE MIR 76 150 -112 326 224 40 0 chr12 94015604 94015680 -49770775 + L2 LINE L2 2699 2777 -537 523 252 159 74 chr12 94015744 94016121 -49770334 - L2 LINE L2 0 3313 2905 471 296 65 27 chr12 94016391 94016577 -49769878 - MIR SINE MIR -26 236 44 350 221 79 3 chr12 94016702 94016839 -49769616 - HsTC2 DNA Tc2 0 1898 31 210 238 0 62 chr12 94016959 94017039 -49769416 + CT-rich Low_complexity Low_complexity 5 79 0 393 289 207 33 chr12 94017358 94017533 -49768922 + MLT1K LTR MaLR 98 328 -260 1721 158 158 10 chr12 94017533 94017836 -49768619 + MER7A DNA MER2_type 1 346 0 393 289 207 33 chr12 94017836 94017902 -49768553 + MLT1K LTR MaLR 328 381 -207 285 202 266 18 chr12 94017928 94018037 -49768418 + MLT1K LTR MaLR 453 588 0 403 283 10 0 chr12 94018095 94018194 -49768261 + L2 LINE L2 3168 3267 -5 204 348 34 0 chr12 94018385 94018474 -49767981 + L2 LINE L2 2599 2690 -624 1403 154 5 5 chr12 94018501 94018722 -49767733 - AluJb SINE Alu -6 306 86 27 0 0 0 chr12 94018727 94018754 -49767701 + AT_rich Low_complexity Low_complexity 1 27 0 863 217 6 0 chr12 94018754 94018916 -49767539 - AluJo SINE Alu -149 163 6 586 318 53 27 chr12 94018915 94019245 -49767210 + L2 LINE L2 2713 3057 -215 * 1841 151 49 0 chr12 94019259 94019543 -49766912 - AluSq SINE Alu -15 298 1 371 267 114 35 chr12 94019689 94019888 -49766567 - MER110 LTR ERV1 -61 407 166 291 219 110 73 chr12 94019954 94020118 -49766337 - MER110A LTR ERV1 -298 170 1 380 322 132 0 chr12 94020188 94020309 -49766146 + L2 LINE L2 3134 3270 -2 25 0 0 0 chr12 94020532 94020557 -49765898 + AT_rich Low_complexity Low_complexity 1 25 0 1783 167 51 59 chr12 94020611 94021000 -49765455 - MLT1B LTR MaLR -2 388 3 478 266 36 0 chr12 94021120 94021259 -49765196 - MIR SINE MIR -1 261 118 1068 247 50 36 chr12 94021295 94021733 -49764722 + MER110A LTR ERV1 70 491 0 27 0 0 26 chr12 94022095 94022117 -49764338 + AT_rich Low_complexity Low_complexity 1 23 -14 2266 86 21 0 chr12 94022117 94022408 -49764047 - AluSp SINE Alu -16 297 1 27 0 0 26 chr12 94022408 94022423 -49764032 + AT_rich Low_complexity Low_complexity 23 37 0 465 299 44 0 chr12 94022459 94022596 -49763859 + MIR SINE MIR 70 212 -50 311 248 92 28 chr12 94023258 94023367 -49763088 - MIR SINE MIR -8 254 139 307 318 80 28 chr12 94024635 94024811 -49761644 + LTR33 LTR ERVL 31 215 -306 297 0 0 0 chr12 94025456 94025489 -49760966 + (CA)n Simple_repeat Simple_repeat 1 33 0 266 183 33 0 chr12 94025496 94025556 -49760899 + MLT1K LTR MaLR 525 586 -2 248 247 182 0 chr12 94025586 94025663 -49760792 - MIR SINE MIR -13 249 159 2421 116 32 3 chr12 94026226 94026604 -49759851 - L1PA10 LINE L1 -1 6167 5779 295 245 51 51 chr12 94026931 94027029 -49759426 - MIR SINE MIR -154 108 11 763 298 57 57 chr12 94027105 94027544 -49758911 + LTR16B LTR ERVL 4 442 -22 183 303 66 26 chr12 94027550 94027626 -49758829 + L2 LINE L2 3199 3277 -36 335 353 26 13 chr12 94027763 94027919 -49758536 - MER5A DNA MER1_type -25 164 7 2055 132 3 7 chr12 94028337 94028640 -49757815 - AluSc SINE Alu -7 302 1 292 271 248 8 chr12 94028960 94029089 -49757366 + MIR SINE MIR 99 258 -4 1379 133 60 11 chr12 94030620 94030905 -49755550 + Charlie5 DNA MER1_type 2321 2619 0 186 71 0 0 chr12 94031507 94031535 -49754920 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 2147 117 0 0 chr12 94033780 94034099 -49752356 - AluSx SINE Alu 0 321 3 216 338 103 14 chr12 94034782 94034896 -49751559 + MIR SINE MIR 47 167 -70 333 260 253 43 chr12 94035070 94035351 -49751104 - Charlie8 DNA MER1_type -2019 398 59 2218 85 20 0 chr12 94035473 94035766 -49750689 - AluSx SINE Alu -13 299 1 338 224 100 69 chr12 94035817 94035997 -49750458 - MIR SINE MIR -24 238 54 248 217 67 0 chr12 94036205 94036265 -49750190 - L2 LINE L2 0 3272 3209 1279 141 207 8 chr12 94036788 94037030 -49749425 - AluSx SINE Alu -22 290 1 231 239 15 30 chr12 94037041 94037108 -49749347 + MER94 DNA DNA 67 132 -2 232 214 54 0 chr12 94037120 94037176 -49749279 + L3 LINE CR1 1168 1226 -351 2206 90 13 3 chr12 94037255 94037555 -49748900 - AluSq SINE Alu -10 303 1 277 293 94 9 chr12 94037608 94037714 -49748741 + MIR SINE MIR 2 116 -146 2551 59 0 0 chr12 94038270 94038575 -49747880 + AluY SINE Alu 1 305 -6 255 61 0 0 chr12 94038708 94038741 -49747714 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1295 161 12 45 chr12 94038751 94038994 -49747461 + AluJo SINE Alu 1 235 -77 578 223 46 29 chr12 94039124 94039299 -49747156 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr12 94039961 94039983 -49746472 + GC_rich Low_complexity Low_complexity 1 22 0 357 353 108 18 chr12 94040522 94040800 -49745655 - L3 LINE CR1 -651 926 624 2045 105 39 3 chr12 94041411 94041696 -49744759 + AluSc SINE Alu 1 295 -14 521 296 150 5 chr12 94042297 94042517 -49743938 + MIR SINE MIR 2 253 -9 1160 180 90 22 chr12 94042954 94043129 -49743326 - AluJo SINE Alu -4 298 96 189 0 0 0 chr12 94043129 94043150 -49743305 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1160 180 90 22 chr12 94043150 94043252 -49743203 - AluJo SINE Alu -206 96 2 439 245 234 23 chr12 94045068 94045217 -49741238 - MIR3 SINE MIR -21 187 3 191 36 36 0 chr12 94046449 94046477 -49739978 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr12 94047000 94047024 -49739431 + AT_rich Low_complexity Low_complexity 1 24 0 290 291 82 37 chr12 94048815 94048949 -49737506 - MIR3 SINE MIR -39 169 30 1022 252 9 5 chr12 94049928 94050150 -49736305 - MER58A DNA MER1_type 0 224 2 807 278 155 8 chr12 94051082 94051610 -49734845 + L1MC4 LINE L1 7437 8042 0 269 347 0 0 chr12 94051800 94051875 -49734580 + L2 LINE L2 3004 3078 -194 187 271 21 0 chr12 94051960 94052008 -49734447 + L2 LINE L2 3256 3304 -9 206 42 0 0 chr12 94052894 94052918 -49733537 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr12 94054564 94054592 -49731863 + AT_rich Low_complexity Low_complexity 1 28 0 291 229 214 38 chr12 94054825 94054956 -49731499 - MIR3 SINE MIR -38 170 17 2442 73 0 0 chr12 94055487 94055787 -49730668 - AluSq SINE Alu -13 300 1 24 85 0 0 chr12 94056291 94056350 -49730105 + AT_rich Low_complexity Low_complexity 1 59 0 825 161 0 23 chr12 94056988 94057118 -49729337 + FLAM_C SINE Alu 1 127 -16 22 0 0 0 chr12 94057516 94057538 -49728917 + AT_rich Low_complexity Low_complexity 1 22 0 441 328 23 23 chr12 94058311 94058482 -49727973 - MIR3 SINE MIR -24 184 14 746 268 13 25 chr12 94059672 94059907 -49726548 + HAL1 LINE L1 144 375 -2132 603 186 238 48 chr12 94059907 94060155 -49726300 + L1ME3A LINE L1 5721 6015 -155 1651 233 87 87 chr12 94060173 94060198 -49726257 + HAL1 LINE L1 1656 1680 -827 1515 220 49 26 chr12 94060198 94060585 -49725870 + MSTD LTR MaLR 1 396 0 1651 233 87 87 chr12 94060585 94061410 -49725045 + HAL1 LINE L1 1679 2506 -1 2121 112 10 16 chr12 94061513 94061816 -49724639 - AluSx SINE Alu -11 301 1 229 309 48 12 chr12 94062127 94062211 -49724244 + L2 LINE L2 2766 2852 -462 210 294 59 20 chr12 94062284 94062386 -49724069 + L2 LINE L2 3000 3105 -167 24 32 0 0 chr12 94062497 94062528 -49723927 + AT_rich Low_complexity Low_complexity 1 31 0 1038 149 12 12 chr12 94062677 94062845 -49723610 + MER2 DNA MER2_type 178 345 0 1977 123 3 27 chr12 94063116 94063416 -49723039 - AluSx SINE Alu -19 293 1 887 251 110 10 chr12 94064044 94064343 -49722112 - MER46C DNA MER2_type -7 331 3 22 0 0 0 chr12 94064520 94064542 -49721913 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr12 94064805 94064832 -49721623 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr12 94065078 94065106 -49721349 + AT_rich Low_complexity Low_complexity 1 28 0 791 242 39 0 chr12 94065525 94065707 -49720748 + MER5A DNA MER1_type 1 189 0 236 257 53 71 chr12 94066887 94067000 -49719455 + L2 LINE L2 2422 2532 -782 485 274 115 9 chr12 94067308 94067534 -49718921 - MER102b DNA MER1_type 0 341 92 1870 168 3 3 chr12 94067929 94068221 -49718234 - AluSx SINE Alu -20 292 1 262 209 163 23 chr12 94068375 94068461 -49717994 - L2 LINE L2 -3 3269 3172 1010 150 12 12 chr12 94069121 94069294 -49717161 + FAM SINE Alu 1 173 -2 184 233 244 0 chr12 94069620 94069710 -49716745 + L2 LINE L2 2242 2353 -961 612 304 209 11 chr12 94069717 94070184 -49716271 + L2 LINE L2 2489 3042 -271 263 258 196 10 chr12 94070411 94070508 -49715947 + L2 LINE L2 3180 3294 -19 214 321 22 73 chr12 94070549 94070686 -49715769 + L2 LINE L2 2932 3061 -211 268 243 108 45 chr12 94070837 94070948 -49715507 + MIR SINE MIR 131 248 -14 254 224 0 20 chr12 94071118 94071167 -49715288 + L2 LINE L2 3246 3293 -20 614 223 114 36 chr12 94071227 94071420 -49715035 - MER3 DNA MER1_type 0 209 2 267 345 125 6 chr12 94073507 94073675 -49712780 - MIR SINE MIR -10 252 65 25 0 0 0 chr12 94074150 94074175 -49712280 + AT_rich Low_complexity Low_complexity 1 25 0 2228 116 3 0 chr12 94074563 94074873 -49711582 + AluSx SINE Alu 1 311 -1 439 268 36 22 chr12 94075607 94075745 -49710710 + MIR SINE MIR 5 144 -118 207 300 0 0 chr12 94076061 94076111 -49710344 - MIR SINE MIR -124 84 35 22 35 0 0 chr12 94076741 94076770 -49709685 + AT_rich Low_complexity Low_complexity 1 29 0 232 177 0 81 chr12 94077905 94077967 -49708488 - MER103 DNA DNA -70 96 40 597 319 195 15 chr12 94078738 94079061 -49707394 - L2 LINE L2 -231 3082 2700 32 26 0 0 chr12 94080054 94080093 -49706362 + AT_rich Low_complexity Low_complexity 1 39 0 2138 80 25 4 chr12 94080223 94080499 -49705956 + AluSx SINE Alu 1 282 -30 2145 134 0 3 chr12 94080535 94080848 -49705607 + AluJb SINE Alu 1 312 0 22 0 0 0 chr12 94081357 94081379 -49705076 + AT_rich Low_complexity Low_complexity 1 22 0 2051 85 67 47 chr12 94082365 94082707 -49703748 + MER46B DNA MER2_type 13 236 0 239 264 0 25 chr12 94083265 94083333 -49703122 + G-rich Low_complexity Low_complexity 6 115 0 2428 97 3 0 chr12 94083354 94083665 -49702790 + AluSx SINE Alu 1 312 0 233 361 46 65 chr12 94084021 94084345 -49702110 + L3 LINE CR1 1 318 -1259 558 280 108 0 chr12 94084425 94084611 -49701844 + MIR SINE MIR 8 213 -49 448 285 192 8 chr12 94085168 94085428 -49701027 + L3 LINE CR1 672 979 -598 188 231 123 15 chr12 94085519 94085584 -49700871 + L3 LINE CR1 1441 1512 -65 233 232 18 0 chr12 94085725 94085781 -49700674 + CT-rich Low_complexity Low_complexity 1 57 0 243 79 0 0 chr12 94085990 94086028 -49700427 + (TA)n Simple_repeat Simple_repeat 2 39 0 1615 165 48 15 chr12 94086028 94086300 -49700155 - AluJo SINE Alu -26 286 6 311 315 174 28 chr12 94086349 94086562 -49699893 + MIR SINE MIR 14 257 -5 287 296 113 14 chr12 94086954 94087049 -49699406 - MIR SINE MIR -59 203 88 544 165 157 0 chr12 94087049 94087164 -49699291 - FLAM_C SINE Alu 0 133 1 287 296 113 14 chr12 94087164 94087210 -49699245 - MIR SINE MIR -174 88 48 1063 52 0 0 chr12 94088538 94088674 -49697781 - L1PA4 LINE L1 -3 6152 6017 203 283 100 0 chr12 94089517 94089577 -49696878 + MIR3 SINE MIR 120 185 -23 181 320 54 75 chr12 94089709 94089856 -49696599 + MIR3 SINE MIR 40 183 -25 391 273 62 0 chr12 94090753 94090881 -49695574 + MIR SINE MIR 89 224 -38 595 296 90 52 chr12 94091079 94091423 -49695032 - L2 LINE L2 -24 3289 2933 490 250 104 38 chr12 94091519 94091759 -49694696 - MER112 DNA MER1_type 0 256 1 871 219 146 13 chr12 94092281 94092596 -49693859 + Charlie7 DNA MER1_type 1911 2267 -345 1746 156 50 3 chr12 94092650 94092932 -49693523 - AluJo SINE Alu -17 295 1 294 230 142 0 chr12 94092932 94093080 -49693375 + Charlie7 DNA MER1_type 2441 2609 -3 491 217 142 48 chr12 94093658 94093941 -49692514 + Charlie1b DNA MER1_type 76 387 -136 705 169 128 0 chr12 94093942 94094090 -49692365 - L1MA9 LINE L1 -4 6308 6142 684 181 49 0 chr12 94094090 94094234 -49692221 + Charlie1b DNA MER1_type 373 523 0 2206 99 0 0 chr12 94094455 94094739 -49691716 + AluSx SINE Alu 1 284 -28 210 176 40 14 chr12 94094739 94094813 -49691642 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr12 94094813 94094835 -49691620 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 94095497 94095528 -49690927 + AT_rich Low_complexity Low_complexity 1 31 0 469 204 11 0 chr12 94095572 94095660 -49690795 + MER20 DNA MER1_type 2 90 -129 1865 153 137 13 chr12 94095843 94096222 -49690233 + MSTB LTR MaLR 1 426 0 1559 137 133 16 chr12 94096574 94096896 -49689559 - MER46B DNA MER2_type 0 236 2 653 201 101 25 chr12 94097166 94097325 -49689130 + MIR SINE MIR 92 262 0 503 129 0 0 chr12 94098337 94098407 -49688048 + AluS SINE Alu 1 70 -243 1732 139 0 0 chr12 94098407 94098651 -49687804 + AluSx SINE Alu 39 282 -30 186 43 0 0 chr12 94098654 94098677 -49687778 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 203 225 254 0 chr12 94099566 94099637 -49686818 + MIR SINE MIR 35 123 -85 1324 343 92 42 chr12 94099882 94101604 -49684851 - L2 LINE L2 -11 3261 1450 266 243 14 14 chr12 94102147 94102221 -49684234 + (TATG)n Simple_repeat Simple_repeat 1 74 0 2446 174 31 0 chr12 94102221 94102634 -49683821 + MSTB LTR MaLR 1 426 0 8528 188 29 4 chr12 94102634 94104246 -49682209 + MSTB-int LTR MaLR 1 1651 0 2889 138 0 5 chr12 94104246 94104674 -49681781 + MSTB LTR MaLR 1 426 0 269 296 88 72 chr12 94104900 94105025 -49681430 - L2 LINE L2 -20 3252 3126 1180 170 73 59 chr12 94105809 94106098 -49680357 - AluJb SINE Alu -9 293 1 273 240 223 25 chr12 94106289 94106410 -49680045 + MIR SINE MIR 5 149 -113 21 36 0 0 chr12 94106415 94106443 -49680012 + AT_rich Low_complexity Low_complexity 1 28 0 409 292 130 10 chr12 94106571 94106763 -49679692 + L2 LINE L2 3083 3297 -16 268 179 54 0 chr12 94106768 94106824 -49679631 + HsTC2 DNA Tc2 5 63 -1835 180 77 0 0 chr12 94106942 94106968 -49679487 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1737 171 32 0 chr12 94107272 94107553 -49678902 - AluJo SINE Alu -16 296 7 2795 13 0 3 chr12 94107816 94108127 -49678328 - AluYb8 SINE Alu -8 310 1 28 48 0 0 chr12 94109177 94109219 -49677236 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr12 94110736 94110761 -49675694 + AT_rich Low_complexity Low_complexity 1 25 0 288 308 152 25 chr12 94110918 94111116 -49675339 - MIR SINE MIR -32 230 8 550 251 198 12 chr12 94111268 94111515 -49674940 + L2 LINE L2 3021 3313 0 760 224 44 27 chr12 94112142 94112325 -49674130 - MER5A DNA MER1_type -3 186 1 23 54 0 0 chr12 94112662 94112699 -49673756 + AT_rich Low_complexity Low_complexity 1 37 0 471 18 0 0 chr12 94113131 94113187 -49673268 + (GA)n Simple_repeat Simple_repeat 1 56 0 267 79 0 0 chr12 94113890 94113928 -49672527 + (CA)n Simple_repeat Simple_repeat 2 39 0 2393 59 23 3 chr12 94114173 94114478 -49671977 + AluY SINE Alu 1 311 0 452 346 100 66 chr12 94114682 94115153 -49671302 + L3 LINE CR1 580 1066 -511 290 227 160 25 chr12 94115166 94115285 -49671170 + MIR SINE MIR 128 262 0 194 261 72 0 chr12 94115892 94115961 -49670494 - MIR3 SINE MIR -1 207 134 234 308 211 0 chr12 94117508 94117612 -49668843 + L2 LINE L2 3121 3246 -26 354 277 109 41 chr12 94118148 94118415 -49668040 + L2 LINE L2 1797 2081 -1233 545 181 155 45 chr12 94119107 94119262 -49667193 - MER5A DNA MER1_type -1 188 17 2041 93 61 0 chr12 94119381 94119660 -49666795 - AluSc SINE Alu -13 296 1 22 0 0 0 chr12 94119896 94119918 -49666537 + AT_rich Low_complexity Low_complexity 1 22 0 195 342 60 17 chr12 94120812 94120929 -49665526 + L2 LINE L2 696 817 -2497 219 296 0 19 chr12 94122169 94122223 -49664232 - L2 LINE L2 -92 3180 3128 1187 182 0 0 chr12 94122246 94122466 -49663989 + L1 LINE L1 4468 4687 -1459 310 224 103 65 chr12 94123699 94123806 -49662649 + L2 LINE L2 3137 3247 -25 424 273 112 7 chr12 94124012 94124155 -49662300 + MIR SINE MIR 59 216 -46 31 58 0 0 chr12 94124800 94124852 -49661603 + AT_rich Low_complexity Low_complexity 1 52 0 785 164 0 0 chr12 94124960 94125094 -49661361 - L1PA16 LINE L1 -1 6165 6032 402 192 0 0 chr12 94125595 94125673 -49660782 - MER116 DNA Mariner -2 78 1 332 199 18 146 chr12 94125999 94126170 -49660285 - MIR SINE MIR -32 230 82 299 380 85 8 chr12 94126578 94126707 -49659748 + MIR3 SINE MIR 15 153 -55 1990 142 3 13 chr12 94126709 94127019 -49659436 + AluSx SINE Alu 6 312 0 335 223 116 18 chr12 94127707 94127819 -49658636 + MER103 DNA DNA 32 154 -12 354 282 13 0 chr12 94128630 94128708 -49657747 - L2 LINE L2 -52 3220 3142 189 0 0 0 chr12 94128710 94128731 -49657724 + (CAAT)n Simple_repeat Simple_repeat 3 23 0 626 212 86 13 chr12 94129175 94129326 -49657129 - MIR SINE MIR -92 170 9 213 279 38 38 chr12 94130026 94130105 -49656350 + L2 LINE L2 3235 3313 0 444 212 142 0 chr12 94130994 94131107 -49655348 - FLAM_C SINE Alu -14 129 1 234 0 0 0 chr12 94131544 94131570 -49654885 + (CCA)n Simple_repeat Simple_repeat 1 26 0 435 38 0 0 chr12 94132503 94132556 -49653899 + (CA)n Simple_repeat Simple_repeat 2 54 0 402 192 192 60 chr12 94133758 94133925 -49652530 + MER58C DNA MER1_type 27 215 0 559 302 150 50 chr12 94135008 94135660 -49650795 + HAL1b LINE L1 89 648 -700 1278 108 0 0 chr12 94135974 94136140 -49650315 - AluSg/x SINE Alu -14 298 133 274 288 126 16 chr12 94136147 94136338 -49650117 + L1MC4a LINE L1 3634 3845 -2301 1831 269 136 36 chr12 94136392 94137815 -49648640 + L1MC4a LINE L1 4019 4930 -1216 1485 253 94 27 chr12 94137815 94138365 -49648090 + MLT1G LTR MaLR 1 587 -3 1831 269 136 36 chr12 94138365 94138892 -49647563 + L1MC4a LINE L1 4930 5403 -743 488 227 44 11 chr12 94138950 94139103 -49647352 + L1MC4a LINE L1 6476 6613 -1195 257 284 27 14 chr12 94139697 94139771 -49646684 - L2 LINE L2 -239 3074 3000 990 158 88 0 chr12 94140070 94140241 -49646214 + MER5A DNA MER1_type 1 186 -3 1871 129 98 14 chr12 94140291 94140647 -49645808 + MLT1B LTR MaLR 1 386 -4 1124 110 95 15 chr12 94141539 94141739 -49644716 - MER2 DNA MER2_type 0 345 130 1609 150 75 14 chr12 94141739 94142033 -49644422 + MER7A DNA MER2_type 1 310 -36 646 144 43 93 chr12 94142033 94142172 -49644283 - MER2 DNA MER2_type -213 132 1 235 216 54 153 chr12 94143121 94143232 -49643223 + L2 LINE L2 3169 3268 -4 359 260 154 30 chr12 94143266 94143435 -49643020 + MIR3 SINE MIR 14 203 -5 583 184 15 22 chr12 94143771 94143907 -49642548 - MER53 DNA DNA 0 189 55 512 244 122 37 chr12 94144715 94144986 -49641469 - MARNA DNA Mariner -15 571 278 208 304 164 35 chr12 94145676 94145847 -49640608 + MIR SINE MIR 20 212 -50 510 218 249 36 chr12 94146487 94146817 -49639638 + HsTC2 DNA Tc2 490 889 -1009 972 170 41 18 chr12 94146892 94147063 -49639392 + MER6A DNA MER2_type 1 175 -430 * 2831 144 102 4 chr12 94147058 94147580 -49638875 + MER6A DNA MER2_type 293 605 0 2085 125 3 7 chr12 94149359 94149663 -49636792 + AluJo SINE Alu 1 303 -9 24 32 0 0 chr12 94149987 94150018 -49636437 + AT_rich Low_complexity Low_complexity 1 31 0 266 244 26 13 chr12 94151403 94151481 -49634974 + MIR SINE MIR 184 262 0 180 0 0 0 chr12 94152254 94152274 -49634181 + (T)n Simple_repeat Simple_repeat 1 20 0 1712 94 22 0 chr12 94152477 94152701 -49633754 - AluSx SINE Alu -30 282 54 230 151 38 0 chr12 94152756 94152809 -49633646 + L1ME1 LINE L1 5248 5302 -844 * 1244 203 103 44 chr12 94152798 94153223 -49633232 + L1ME1 LINE L1 5715 6160 -6 1325 257 210 23 chr12 94153286 94153928 -49632527 - HAL1 LINE L1 -1742 765 4 1749 153 0 43 chr12 94154436 94154737 -49631718 - AluJb SINE Alu -24 288 1 605 192 8 23 chr12 94156301 94156431 -49630024 - FLAM_C SINE Alu -5 128 1 253 299 60 0 chr12 94156558 94156625 -49629830 + MER91C DNA MER1_type 40 110 -30 32 0 0 0 chr12 94157703 94157735 -49628720 + AT_rich Low_complexity Low_complexity 1 32 0 456 239 8 75 chr12 94158459 94158593 -49627862 + MER5A DNA MER1_type 63 187 -2 180 97 0 0 chr12 94159194 94159225 -49627230 + (A)n Simple_repeat Simple_repeat 1 31 0 232 204 41 0 chr12 94159241 94159290 -49627165 + MIR SINE MIR 156 206 -56 38 0 0 0 chr12 94163135 94163173 -49623282 + GC_rich Low_complexity Low_complexity 1 38 0 409 283 97 107 chr12 94163280 94164031 -49622424 + L1M2 LINE L1 525 1141 -5708 2186 93 0 0 chr12 94166600 94166909 -49619546 + AluSc SINE Alu 1 309 0 270 289 35 26 chr12 94167952 94168066 -49618389 + MIR SINE MIR 148 262 0 2073 154 100 3 chr12 94168135 94168525 -49617930 - MSTA LTR MaLR 0 428 1 9608 172 15 7 chr12 94168530 94170162 -49616293 - MSTA-int LTR MaLR -6 1645 1 2035 191 78 0 chr12 94170162 94170559 -49615896 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr12 94170581 94170602 -49615853 + AT_rich Low_complexity Low_complexity 1 21 0 231 218 0 18 chr12 94170727 94170782 -49615673 - MLT1L LTR MaLR -4 611 558 456 239 51 36 chr12 94170987 94171125 -49615330 - MER5A DNA MER1_type -15 174 35 2699 101 5 13 chr12 94171256 94171634 -49614821 + THE1C LTR MaLR 1 375 0 1445 219 43 24 chr12 94172430 94172805 -49613650 - MLT1B LTR MaLR -6 384 3 360 314 124 58 chr12 94172942 94173179 -49613276 + L1MEd LINE L1 70 327 -5792 1717 186 36 25 chr12 94173179 94173540 -49612915 + MLT1A1 LTR MaLR 1 365 0 360 314 124 58 chr12 94173540 94173560 -49612895 + L1MEd LINE L1 327 344 -5775 272 301 77 31 chr12 94173691 94173881 -49612574 + HAL1 LINE L1 1374 1581 -926 2337 117 8 22 chr12 94173881 94174250 -49612205 + THE1B LTR MaLR 1 364 0 272 301 77 31 chr12 94174250 94174318 -49612137 + HAL1 LINE L1 1581 1644 -863 2144 97 4 4 chr12 94174365 94174643 -49611812 + AluSx SINE Alu 28 305 -7 2235 22 8 4 chr12 94175090 94175358 -49611097 + AluYa5 SINE Alu 1 269 -42 23 54 0 0 chr12 94175838 94175875 -49610580 + AT_rich Low_complexity Low_complexity 1 37 0 252 120 0 0 chr12 94176250 94176300 -49610155 + (T)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr12 94176742 94176767 -49609688 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr12 94178318 94178342 -49608113 + (CA)n Simple_repeat Simple_repeat 2 25 0 291 113 0 0 chr12 94178906 94178959 -49607496 + (TG)n Simple_repeat Simple_repeat 2 54 0 319 267 40 0 chr12 94180018 94180137 -49606318 - FLAM_A SINE Alu -13 120 7 450 0 0 0 chr12 94181545 94181595 -49604860 + (CA)n Simple_repeat Simple_repeat 2 51 0 263 257 88 14 chr12 94184050 94184198 -49602257 - FRAM SINE Alu -4 162 4 414 0 0 0 chr12 94184530 94184576 -49601879 + (TG)n Simple_repeat Simple_repeat 2 47 0 531 251 16 47 chr12 94186363 94186618 -49599837 - L1MC3 LINE L1 -7 7778 7532 486 79 0 0 chr12 94186830 94186906 -49599549 + (TC)n Simple_repeat Simple_repeat 2 77 0 570 29 0 0 chr12 94187136 94187204 -49599251 + (TA)n Simple_repeat Simple_repeat 2 69 0 252 272 16 56 chr12 94188357 94188482 -49597973 + FLAM_C SINE Alu 4 123 -10 265 17 86 17 chr12 94188680 94188738 -49597717 + T-rich Low_complexity Low_complexity 1 62 0 433 179 105 0 chr12 94188790 94188885 -49597570 - AluSq/x SINE Alu -208 105 1 221 0 35 0 chr12 94188887 94188916 -49597539 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 271 240 21 31 chr12 94189868 94189964 -49596491 - MLT1D LTR MaLR -138 367 273 308 176 0 40 chr12 94190053 94190127 -49596328 - PMER1 DNA MER1_type -19 71 1 239 98 0 118 chr12 94191288 94191339 -49595116 - PMER1 DNA MER1_type -37 53 9 182 337 144 39 chr12 94191363 94191544 -49594911 + MIR SINE MIR 21 220 -42 1275 73 0 0 chr12 94193303 94193766 -49592689 + (TG)n Simple_repeat Simple_repeat 1 463 0 426 358 17 11 chr12 94193797 94193973 -49592482 + C-rich Low_complexity Low_complexity 4 180 0 * 496 302 11 27 chr12 94193878 94194110 -49592345 + CT-rich Low_complexity Low_complexity 1 228 0 341 341 22 0 chr12 94194041 94194179 -49592276 + T-rich Low_complexity Low_complexity 3 143 0 * 223 258 0 44 chr12 94194179 94194361 -49592094 + C-rich Low_complexity Low_complexity 5 178 0 2691 0 0 7 chr12 94194845 94195143 -49591312 + AluYa5 SINE Alu 1 296 -15 24 0 0 0 chr12 94195743 94195767 -49590688 + AT_rich Low_complexity Low_complexity 1 24 0 1800 117 0 0 chr12 94196743 94196983 -49589472 - AluSc SINE Alu -69 240 1 481 256 90 8 chr12 94197765 94197898 -49588557 + MIR SINE MIR 50 193 -69 203 0 37 0 chr12 94198861 94198888 -49587567 + (TA)n Simple_repeat Simple_repeat 2 29 0 * 288 0 0 0 chr12 94198887 94198919 -49587536 + (TG)n Simple_repeat Simple_repeat 1 32 0 201 39 0 0 chr12 94198918 94198944 -49587511 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 542 177 18 0 chr12 94199435 94199548 -49586907 + L1PA15 LINE L1 4812 4926 -1220 * 8286 172 19 6 chr12 94199542 94201275 -49585180 + L1PA13 LINE L1 3680 5429 -734 586 118 0 0 chr12 94201275 94201360 -49585095 + 5S rRNA rRNA 2 86 -35 4995 117 5 1 chr12 94201360 94202107 -49584348 + L1PA13 LINE L1 5414 6163 0 5658 123 13 2 chr12 94202150 94203392 -49583063 + L1PA15 LINE L1 4909 6159 -6 2344 39 4 0 chr12 94203739 94204057 -49582398 + AluY SINE Alu 1 319 0 368 299 75 50 chr12 94204738 94204939 -49581516 - L2 LINE L2 -557 2757 2552 283 182 26 0 chr12 94205215 94205292 -49581163 + (TA)n Simple_repeat Simple_repeat 2 80 0 260 71 48 0 chr12 94206672 94206714 -49579741 + GA-rich Low_complexity Low_complexity 2 45 0 492 292 124 0 chr12 94207849 94208027 -49578428 - MIR SINE MIR -43 219 20 768 311 43 17 chr12 94208120 94208355 -49578100 + MIR SINE MIR 12 252 -10 2069 240 99 2 chr12 94208530 94209035 -49577420 + MLT1H1 LTR MaLR 2 555 0 201 329 0 49 chr12 94209063 94209145 -49577310 - L2 LINE L2 -38 3275 3198 2016 196 5 57 chr12 94209145 94209584 -49576871 - MLT2B1 LTR ERVL 0 520 105 664 347 20 20 chr12 94209607 94210008 -49576447 + MARNA DNA Mariner 171 571 -15 414 311 79 49 chr12 94210192 94210459 -49575996 + L2 LINE L2 2361 2635 -679 198 352 80 0 chr12 94210440 94210528 -49575927 + L2 LINE L2 2943 3037 -235 * 560 277 143 49 chr12 94210648 94211013 -49575442 - L2 LINE L2 0 3313 2915 314 267 0 0 chr12 94211439 94211514 -49574941 + MER3 DNA MER1_type 38 112 -97 14912 141 32 20 chr12 94211517 94212497 -49573958 + L1MA3 LINE L1 1558 2524 -5200 2241 122 0 10 chr12 94212497 94212809 -49573646 + AluSx SINE Alu 1 309 -3 14912 141 32 20 chr12 94212809 94217679 -49568776 + L1MA3 LINE L1 2524 7490 -234 2598 44 0 0 chr12 94217679 94217976 -49568479 + AluY SINE Alu 1 297 -14 14912 141 32 20 chr12 94217976 94218214 -49568241 + L1MA3 LINE L1 7490 7724 0 688 196 138 0 chr12 94218236 94218476 -49567979 + MER33 DNA MER1_type 52 324 0 286 258 67 34 chr12 94218514 94218603 -49567852 + MLT1J2 LTR MaLR 72 140 -310 24 32 0 0 chr12 94218719 94218750 -49567705 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr12 94219008 94219039 -49567416 + AT_rich Low_complexity Low_complexity 1 31 0 1797 228 22 21 chr12 94219039 94219283 -49567172 - L1MEc LINE L1 -3475 2740 2498 252 0 0 0 chr12 94219283 94219311 -49567144 + (TA)n Simple_repeat Simple_repeat 2 29 0 1797 228 22 21 chr12 94219311 94219760 -49566695 - L1MEc LINE L1 -3717 2498 2089 1193 217 18 14 chr12 94219751 94220027 -49566428 - L1MEc LINE L1 -6098 298 22 * 474 270 85 19 chr12 94220163 94220374 -49566081 + L2 LINE L2 2464 2688 -626 4105 234 48 22 chr12 94220388 94221850 -49564605 - L1ME2 LINE L1 -3 6230 4807 1919 147 0 0 chr12 94221850 94222123 -49564332 - AluJb SINE Alu -19 293 21 4105 234 48 22 chr12 94222123 94222500 -49563955 - L1ME2 LINE L1 -1426 4807 4318 207 0 0 0 chr12 94222500 94222523 -49563932 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4105 234 48 22 chr12 94222523 94222756 -49563699 - L1ME2 LINE L1 -1915 4318 4092 678 254 21 8 chr12 94222779 94223019 -49563436 - L1ME2 LINE L1 -2371 3844 3602 351 289 45 29 chr12 94223100 94223342 -49563113 - L1ME2 LINE L1 -6129 267 22 834 256 117 8 chr12 94223353 94223679 -49562776 + L2 LINE L2 2713 3058 -255 523 224 164 0 chr12 94223792 94223926 -49562529 - MER58A DNA MER1_type 0 156 1 2253 103 0 3 chr12 94223997 94224298 -49562157 - AluY SINE Alu -11 300 1 765 288 87 42 chr12 94224533 94224960 -49561495 - MLT1L LTR MaLR 0 615 170 862 209 119 10 chr12 94224983 94225184 -49561271 + MER58A DNA MER1_type 2 224 0 2246 91 10 13 chr12 94226293 94226600 -49559855 + AluSq SINE Alu 1 306 -7 572 88 165 0 chr12 94228402 94228493 -49557962 + U6 snRNA snRNA 2 107 0 2462 149 48 11 chr12 94228493 94228955 -49557500 + L1MA6 LINE L1 5816 6294 -6 1053 142 51 0 chr12 94229252 94229428 -49557027 - L1PA16 LINE L1 -9 6157 5973 223 241 86 0 chr12 94229636 94229694 -49556761 - L2 LINE L2 0 3313 3251 826 134 10 67 chr12 94229717 94229823 -49556632 + L1MB3 LINE L1 5998 6090 -93 2014 109 6 53 chr12 94229823 94230143 -49556312 - AluSx SINE Alu -7 305 1 826 134 10 67 chr12 94230143 94230230 -49556225 + L1MB3 LINE L1 6090 6180 -3 200 213 0 0 chr12 94230234 94230281 -49556174 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2404 237 70 11 chr12 94230289 94231120 -49555335 - L2 LINE L2 -82 3231 2336 442 152 202 0 chr12 94231407 94231506 -49554949 - Charlie4 DNA MER1_type -1839 122 4 328 321 112 15 chr12 94231720 94231820 -49554635 - L1MC4 LINE L1 -21 8021 7932 216 111 0 0 chr12 94231820 94231856 -49554599 + (CA)n Simple_repeat Simple_repeat 2 37 0 328 321 112 15 chr12 94231856 94231951 -49554504 - L1MC4 LINE L1 -110 7932 7807 2995 173 22 14 chr12 94231951 94232904 -49553551 + L1PA16 LINE L1 4815 5771 -395 189 0 0 0 chr12 94232910 94232931 -49553524 + (TG)n Simple_repeat Simple_repeat 2 22 0 335 221 70 23 chr12 94232933 94233019 -49553436 + L1MC4 LINE L1 6614 6703 -1339 300 221 0 0 chr12 94233020 94233097 -49553358 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 2037 122 4 4 chr12 94233106 94233385 -49553070 - AluSg SINE Alu -31 279 1 232 103 0 103 chr12 94233401 94233459 -49552996 - L1MC4 LINE L1 -1339 6703 6652 1863 137 83 14 chr12 94233477 94233827 -49552628 + L1PA16 LINE L1 5784 6157 -9 706 251 181 49 chr12 94233917 94234430 -49552025 - L1MC4 LINE L1 -274 7768 7188 201 196 0 0 chr12 94234825 94234876 -49551579 + CT-rich Low_complexity Low_complexity 5 55 0 189 0 0 0 chr12 94236123 94236144 -49550311 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr12 94236469 94236493 -49549962 + AT_rich Low_complexity Low_complexity 1 24 0 1799 171 0 23 chr12 94237835 94238140 -49548315 + AluJb SINE Alu 1 298 -14 1538 182 62 104 chr12 94238446 94238538 -49547917 + MLT1C LTR MaLR 1 95 -372 4175 49 15 4 chr12 94238538 94239064 -49547391 + L1PA6 LINE L1 5623 6154 0 1538 182 62 104 chr12 94239064 94239079 -49547376 + MLT1C LTR MaLR 95 109 -358 1588 76 4 17 chr12 94239079 94239316 -49547139 + L1PA10 LINE L1 5931 6164 -4 1538 182 62 104 chr12 94239316 94239695 -49546760 + MLT1C LTR MaLR 109 467 0 23 33 0 0 chr12 94239900 94239930 -49546525 + AT_rich Low_complexity Low_complexity 1 30 0 993 254 5 5 chr12 94240373 94240597 -49545858 + MER58A DNA MER1_type 1 224 0 416 272 89 30 chr12 94241120 94241289 -49545166 + MIR SINE MIR 84 262 0 2432 148 5 37 chr12 94241325 94241757 -49544698 + MSTC LTR MaLR 11 428 0 1813 207 113 25 chr12 94241835 94242313 -49544142 - MLT2B1 LTR ERVL 0 520 1 6915 123 26 32 chr12 94242313 94243484 -49542971 - ERVL-B1 LTR ERVL -7 5757 4594 * 14535 189 53 65 chr12 94243482 94245945 -49540510 - ERVL-B1 LTR ERVL -2056 3708 1209 370 133 201 0 chr12 94245945 94246040 -49540415 - FLAM_C SINE Alu -8 125 1 14535 189 53 65 chr12 94246040 94247234 -49539221 - ERVL-B1 LTR ERVL -4555 1209 2 240 130 22 0 chr12 94247235 94247281 -49539174 + MLT2B2 LTR ERVL 458 504 -11 347 40 0 20 chr12 94247287 94247337 -49539118 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 824 228 45 10 chr12 94247337 94247539 -49538916 + ERVL-B2 LTR ERVL 244 452 -5312 1004 207 52 122 chr12 94247610 94247996 -49538459 - MLT2B1 LTR ERVL -54 360 2 931 251 109 52 chr12 94247997 94248228 -49538227 - L2 LINE L2 -31 3282 3023 2442 78 0 0 chr12 94248228 94248535 -49537920 + AluY SINE Alu 1 307 -4 931 251 109 52 chr12 94248535 94248650 -49537805 - L2 LINE L2 -290 3023 2916 1096 264 132 39 chr12 94248658 94249219 -49537236 - L2 LINE L2 -2075 1239 627 185 305 102 0 chr12 94249303 94249362 -49537093 + L2 LINE L2 2995 3059 -213 311 282 188 34 chr12 94250125 94250274 -49536181 + MER5B DNA MER1_type 7 178 0 203 343 152 0 chr12 94251040 94251139 -49535316 + MIR SINE MIR 18 131 -131 307 264 162 41 chr12 94251258 94251455 -49535000 - L2 LINE L2 -2219 1095 875 1829 126 84 31 chr12 94252162 94252518 -49533937 + THE1C LTR MaLR 1 375 0 238 228 24 134 chr12 94252938 94253065 -49533390 + MIR SINE MIR 52 164 -98 245 186 85 0 chr12 94253239 94253298 -49533157 + HSMAR1 DNA Mariner 1 64 -1223 21 89 0 0 chr12 94254122 94254178 -49532277 + AT_rich Low_complexity Low_complexity 1 56 0 332 192 29 106 chr12 94254672 94254741 -49531714 - MIR SINE MIR 0 262 202 1683 181 10 26 chr12 94254741 94255045 -49531410 - AluJo SINE Alu -13 299 1 332 192 29 106 chr12 94255045 94255079 -49531376 - MIR SINE MIR -60 202 167 1106 52 0 0 chr12 94255079 94255214 -49531241 + AluY SINE Alu 164 298 -13 635 227 73 7 chr12 94255216 94255366 -49531089 - MIR SINE MIR -101 161 2 327 274 89 78 chr12 94255418 94255597 -49530858 + MIR SINE MIR 33 213 -49 482 321 71 29 chr12 94256745 94257056 -49529399 + L3b LINE CR1 1114 1437 -146 716 187 0 30 chr12 94257085 94257219 -49529236 - FLAM_A SINE Alu -1 132 3 218 377 61 18 chr12 94257678 94257792 -49528663 - MIR SINE MIR -107 155 37 797 292 64 22 chr12 94257952 94258264 -49528191 + LTR16A LTR ERVL 120 444 -6 675 335 31 29 chr12 94258569 94258918 -49527537 + HERV16 LTR ERVL 362 711 -4285 402 309 108 0 chr12 94258966 94259105 -49527350 + HERV16 LTR ERVL 1682 1835 -3161 359 269 28 9 chr12 94259107 94259215 -49527240 - MER3 DNA MER1_type -99 110 1 484 351 11 0 chr12 94259240 94259414 -49527041 + HERV16 LTR ERVL 2871 3046 -2718 2053 116 69 36 chr12 94259739 94260102 -49526353 + THE1C LTR MaLR 1 375 0 9408 122 51 31 chr12 94260102 94261651 -49524804 + THE1C-int LTR MaLR 1 1580 0 2096 124 59 8 chr12 94261653 94262008 -49524447 + THE1C LTR MaLR 3 375 0 761 275 15 75 chr12 94262046 94262067 -49524388 + LTR16A LTR ERVL 120 141 -309 2539 111 103 0 chr12 94262067 94262455 -49524000 - MSTC LTR MaLR 0 428 1 761 275 15 75 chr12 94262455 94262768 -49523687 + LTR16A LTR ERVL 141 434 -16 245 336 69 46 chr12 94263428 94263559 -49522896 + MIR SINE MIR 20 153 -55 2012 166 0 6 chr12 94263559 94263873 -49522582 + AluJb SINE Alu 1 312 0 256 221 21 74 chr12 94265453 94265513 -49520942 + MIR SINE MIR 96 151 -111 1996 241 83 24 chr12 94265513 94266102 -49520353 + MLT1E2 LTR MaLR 1 624 -2 256 221 21 74 chr12 94266102 94266136 -49520319 + MIR SINE MIR 151 185 -77 226 244 0 0 chr12 94266261 94266306 -49520149 - MIR SINE MIR 0 262 218 2245 211 87 37 chr12 94268662 94269309 -49517146 - L1MC4 LINE L1 0 8042 7353 2066 132 7 0 chr12 94269309 94269610 -49516845 - AluSx SINE Alu 0 303 1 2245 211 87 37 chr12 94269610 94269685 -49516770 - L1MC4 LINE L1 -689 7353 7283 265 320 116 35 chr12 94269722 94270066 -49516389 + LTR33 LTR ERVL 1 372 -149 1729 146 70 114 chr12 94270140 94270231 -49516224 - MSTA LTR MaLR 0 428 335 1101 16 0 0 chr12 94270231 94270360 -49516095 - L1PA4 LINE L1 -3 6152 6024 1729 146 70 114 chr12 94270360 94270708 -49515747 - MSTA LTR MaLR -93 335 8 1036 281 105 19 chr12 94271209 94271675 -49514780 + LTR33 LTR ERVL 12 517 -4 21 0 0 0 chr12 94272354 94272375 -49514080 + AT_rich Low_complexity Low_complexity 1 21 0 251 314 109 41 chr12 94274747 94274967 -49511488 - MIR SINE MIR -27 235 1 189 0 0 0 chr12 94274993 94275014 -49511441 + (CAGC)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 94275233 94275258 -49511197 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 94275349 94275383 -49511072 + (CA)n Simple_repeat Simple_repeat 2 35 0 219 242 0 0 chr12 94275537 94275599 -49510856 + GA-rich Low_complexity Low_complexity 2 63 0 22 56 0 0 chr12 94275881 94275917 -49510538 + AT_rich Low_complexity Low_complexity 1 36 0 1873 161 0 3 chr12 94277362 94277654 -49508801 + AluJb SINE Alu 1 291 -21 1303 217 94 35 chr12 94278855 94279229 -49507226 + MSTD LTR MaLR 1 396 0 1588 198 109 6 chr12 94280327 94280686 -49505769 + MSTD LTR MaLR 1 396 0 33 0 0 0 chr12 94280884 94280917 -49505538 + AT_rich Low_complexity Low_complexity 1 33 0 42095 38 22 1 chr12 94280918 94286940 -49499515 - L1PA3 LINE L1 0 6155 3 2258 98 0 0 chr12 94286943 94287253 -49499202 - AluSx SINE Alu 0 310 1 271 231 0 0 chr12 94287789 94287841 -49498614 - MER5B DNA MER1_type 0 178 127 461 237 141 0 chr12 94287842 94287977 -49498478 - MER5A DNA MER1_type -1 188 35 272 259 153 0 chr12 94287986 94288071 -49498384 + MER5B DNA MER1_type 79 176 -2 765 237 302 34 chr12 94288344 94288754 -49497701 - LTR33A LTR ERVL -2 521 2 2509 141 16 30 chr12 94288988 94289428 -49497027 + Tigger2a DNA MER2_type 1 434 0 27 29 0 0 chr12 94289488 94289522 -49496933 + AT_rich Low_complexity Low_complexity 1 34 0 5495 149 18 1 chr12 94289700 94290735 -49495720 - Tigger1 DNA MER2_type 0 2418 1314 1986 151 0 7 chr12 94290735 94291033 -49495422 - AluSx SINE Alu -12 300 5 1400 257 114 51 chr12 94291704 94292475 -49493980 - HAL1 LINE L1 -1 2506 1687 911 313 170 9 chr12 94292575 94293029 -49493426 - HAL1 LINE L1 -1977 530 4 2135 119 0 0 chr12 94293061 94293346 -49493109 - AluSx SINE Alu -19 293 9 318 213 66 59 chr12 94293909 94294045 -49492410 - L1ME4a LINE L1 -3 6118 5982 2519 40 0 3 chr12 94294102 94294402 -49492053 + AluY SINE Alu 1 299 -12 953 231 42 108 chr12 94294413 94294708 -49491747 - L1MC5 LINE L1 -50 7911 7598 1819 101 83 11 chr12 94294708 94294984 -49491471 + AluSx SINE Alu 1 296 -16 953 231 42 108 chr12 94294984 94295491 -49490964 - L1MC5 LINE L1 -363 7598 7238 289 213 0 38 chr12 94295532 94295612 -49490843 - L1MC5 LINE L1 -781 7180 7104 1655 199 3 0 chr12 94295613 94295905 -49490550 + AluJb SINE Alu 1 293 -19 342 347 88 32 chr12 94295922 94296138 -49490317 - L1ME4a LINE L1 -294 5827 5600 21 0 0 0 chr12 94296156 94296177 -49490278 + AT_rich Low_complexity Low_complexity 1 21 0 448 242 0 24 chr12 94296636 94296760 -49489695 - L1MB8 LINE L1 -14 6164 6044 386 255 0 11 chr12 94296828 94296922 -49489533 - L1MB5 LINE L1 -73 6101 6009 2726 128 0 5 chr12 94296922 94297336 -49489119 + L1PA16 LINE L1 5752 6163 -3 287 214 12 48 chr12 94297350 94297434 -49489021 + HAL1b LINE L1 447 527 -821 1881 110 33 4 chr12 94297538 94297857 -49488598 - AluSx SINE Alu 0 329 3 337 302 0 0 chr12 94298984 94299113 -49487342 - L1MB5 LINE L1 -317 5804 5676 21 36 0 0 chr12 94299219 94299247 -49487208 + AT_rich Low_complexity Low_complexity 1 28 0 406 285 170 15 chr12 94299297 94299627 -49486828 - HAL1b LINE L1 -739 609 229 822 118 0 0 chr12 94301321 94301440 -49485015 - L1PB1 LINE L1 -245 5906 5788 1950 62 0 8 chr12 94301440 94301695 -49484760 + L1PB1 LINE L1 5898 6151 0 722 287 28 85 chr12 94301860 94302247 -49484208 - MLT1H LTR MaLR 0 549 185 504 167 114 0 chr12 94302322 94302436 -49484019 + MIR SINE MIR 78 204 -58 203 179 0 0 chr12 94302769 94302808 -49483647 + A-rich Low_complexity Low_complexity 1 39 0 360 333 140 52 chr12 94303464 94304583 -49481872 - L2 LINE L2 -469 2845 1628 208 339 68 0 chr12 94304901 94304960 -49481495 - L2 LINE L2 -43 3229 3167 200 297 18 72 chr12 94305334 94305445 -49481010 + MIR SINE MIR 4 108 -154 338 283 0 0 chr12 94305611 94305703 -49480752 + MLT1K LTR MaLR 491 582 -6 195 316 26 13 chr12 94306357 94306433 -49480022 + MIR SINE MIR 84 160 -102 544 279 86 30 chr12 94306922 94307155 -49479300 + MIR SINE MIR 3 248 -14 747 153 8 153 chr12 94307277 94307531 -49478924 + MER20 DNA MER1_type 1 217 -2 201 143 0 0 chr12 94307700 94307735 -49478720 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1977 126 3 43 chr12 94309333 94309658 -49476797 + AluSx SINE Alu 1 312 0 199 296 0 0 chr12 94309814 94309868 -49476587 - L2 LINE L2 -8 3264 3211 23 33 0 0 chr12 94310090 94310120 -49476335 + AT_rich Low_complexity Low_complexity 1 30 0 207 362 140 26 chr12 94310176 94310634 -49475821 - L2 LINE L2 0 3313 2804 23 86 0 0 chr12 94312163 94312221 -49474234 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr12 94312943 94312964 -49473491 + AT_rich Low_complexity Low_complexity 1 21 0 249 229 0 0 chr12 94315923 94315971 -49470484 + MIR SINE MIR 200 247 -15 21 0 0 0 chr12 94316313 94316334 -49470121 + AT_rich Low_complexity Low_complexity 1 21 0 1117 278 65 39 chr12 94316987 94317480 -49468975 - MLT1J LTR MaLR -5 506 1 941 250 46 12 chr12 94318326 94318566 -49467889 + MIR SINE MIR 2 249 -13 568 276 121 30 chr12 94318867 94319066 -49467389 + MIR SINE MIR 46 262 0 2160 87 13 10 chr12 94319364 94319675 -49466780 - L1PA14 LINE L1 -3 6158 5847 24 0 0 0 chr12 94321479 94321503 -49464952 + AT_rich Low_complexity Low_complexity 1 24 0 491 255 131 35 chr12 94322213 94322358 -49464097 + MIR3 SINE MIR 33 191 -17 805 204 32 43 chr12 94322637 94322823 -49463632 - MER20 DNA MER1_type 0 219 36 1327 154 31 4 chr12 94323388 94323647 -49462808 + L1MA7 LINE L1 6022 6287 -4 425 254 160 86 chr12 94324105 94324349 -49462106 + MIR SINE MIR 1 262 0 281 307 64 0 chr12 94326375 94326515 -49459940 + L1ME4a LINE L1 5721 5869 -252 298 233 101 13 chr12 94326568 94326727 -49459728 + L1ME4a LINE L1 5944 6116 -5 246 271 114 29 chr12 94327112 94327252 -49459203 - MIR SINE MIR -40 222 71 2112 125 7 13 chr12 94327490 94327794 -49458661 - AluSx SINE Alu -10 302 1 220 234 0 65 chr12 94328379 94328440 -49458015 + T-rich Low_complexity Low_complexity 5 58 -46 1775 128 0 0 chr12 94328440 94328682 -49457773 - AluSx SINE Alu -36 276 35 220 234 0 65 chr12 94328682 94328727 -49457728 + T-rich Low_complexity Low_complexity 58 104 0 198 365 47 37 chr12 94328755 94328862 -49457593 - L2 LINE L2 -19 3253 3146 2479 144 39 2 chr12 94329195 94329606 -49456849 - MSTB LTR MaLR 0 426 1 226 302 63 0 chr12 94331445 94331508 -49454947 - L2 LINE L2 -8 3305 3239 2400 92 0 13 chr12 94331541 94331857 -49454598 + AluSq SINE Alu 1 312 -1 333 281 31 0 chr12 94331974 94332070 -49454385 - L2 LINE L2 -201 3071 2973 436 231 24 185 chr12 94332070 94332368 -49454087 + MIR SINE MIR 2 251 -11 348 365 139 26 chr12 94332397 94332707 -49453748 - L2 LINE L2 -344 2970 2626 252 327 33 40 chr12 94332707 94332857 -49453598 - MER5B DNA MER1_type 0 178 30 22 0 0 0 chr12 94332969 94332991 -49453464 + AT_rich Low_complexity Low_complexity 1 22 0 1171 195 102 16 chr12 94332992 94333238 -49453217 + AluJo SINE Alu 30 296 -16 407 313 148 21 chr12 94333272 94333515 -49452940 - L2 LINE L2 -838 2476 2203 202 262 33 33 chr12 94333589 94333650 -49452805 - L2 LINE L2 -2 3311 3251 246 305 134 50 chr12 94333660 94333922 -49452533 - L2 LINE L2 -1232 2082 1799 795 240 103 96 chr12 94333940 94334482 -49451973 + MLT1H LTR MaLR 1 546 -3 967 234 9 82 chr12 94334686 94335028 -49451427 + L1ME1 LINE L1 5823 6139 -27 2361 158 16 38 chr12 94335029 94335287 -49451168 - Tigger2a DNA MER2_type -2274 434 189 1354 121 35 167 chr12 94335287 94335634 -49450821 - AluY SINE Alu 0 301 1 2361 158 16 38 chr12 94335634 94335818 -49450637 - Tigger2a DNA MER2_type -2519 189 2 1626 221 88 70 chr12 94335897 94336512 -49449943 + MLT1E2 LTR MaLR 1 626 0 234 0 0 0 chr12 94336842 94336868 -49449587 + (TG)n Simple_repeat Simple_repeat 2 27 0 588 249 144 5 chr12 94336949 94337150 -49449305 + MIR SINE MIR 32 260 -2 5258 140 13 26 chr12 94339284 94340210 -49446245 + L1MC1 LINE L1 5420 6333 0 37 39 0 0 chr12 94340509 94340560 -49445895 + AT_rich Low_complexity Low_complexity 1 51 0 923 266 118 62 chr12 94340658 94340728 -49445727 - L1MC4a LINE L1 -1779 6029 5964 207 0 0 0 chr12 94340728 94340751 -49445704 + (TA)n Simple_repeat Simple_repeat 2 24 0 923 266 118 62 chr12 94340751 94341323 -49445132 - L1MC4a LINE L1 -1844 5964 5351 426 295 101 60 chr12 94341348 94341415 -49445040 - L1MC4a LINE L1 -870 5276 5213 6245 55 14 16 chr12 94341415 94342208 -49444247 - SVA Other Other 0 1386 596 426 295 101 60 chr12 94342208 94342587 -49443868 - L1MC4a LINE L1 -933 5213 4812 384 269 112 81 chr12 94342719 94343603 -49442852 - L1MC4a LINE L1 -1542 4604 3694 239 336 54 26 chr12 94343822 94344212 -49442243 - L1P LINE L1 -3599 2547 2147 21 36 0 0 chr12 94344368 94344396 -49442059 + AT_rich Low_complexity Low_complexity 1 28 0 1020 290 115 31 chr12 94344565 94345306 -49441149 - HAL1b LINE L1 -437 911 109 2122 134 0 0 chr12 94345319 94345618 -49440837 - AluSq SINE Alu -14 299 1 897 321 88 0 chr12 94345780 94346132 -49440323 - L2 LINE L2 -388 2926 2544 363 337 37 25 chr12 94346254 94346417 -49440038 - L2 LINE L2 0 3313 3149 * 680 260 48 19 chr12 94346392 94346600 -49439855 - MIR SINE MIR -1 261 48 565 355 37 4 chr12 94346650 94346892 -49439563 - L2 LINE L2 -248 3065 2816 * 667 275 28 28 chr12 94346885 94347103 -49439352 - L2 LINE L2 -642 2672 2455 282 290 90 0 chr12 94347312 94347412 -49439043 - MIR SINE MIR -101 161 53 548 300 26 39 chr12 94349102 94349335 -49437120 + MIR SINE MIR 21 250 -12 23 33 0 0 chr12 94351799 94351829 -49434626 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 94352099 94352121 -49434334 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 94352425 94352453 -49434002 + AT_rich Low_complexity Low_complexity 1 28 0 704 108 25 8 chr12 94352817 94352937 -49433518 + AluSg/x SINE Alu 183 304 -8 340 291 146 0 chr12 94353935 94354045 -49432410 + L2 LINE L2 3187 3312 -1 24 0 0 0 chr12 94354843 94354867 -49431588 + GC_rich Low_complexity Low_complexity 1 24 0 1176 204 0 22 chr12 94455292 94455522 -49330933 - AluJb SINE Alu -87 225 1 3980 145 122 29 chr12 94455606 94456975 -49329480 + pTR5 LTR ERV1 740 2606 0 918 104 0 0 chr12 94456975 94457100 -49329355 + pTR5 LTR ERV1 270 394 -2044 2015 208 48 2 chr12 94457105 94457582 -49328873 + L1 LINE L1 2253 2751 -3395 288 0 0 0 chr12 94457582 94457614 -49328841 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 463 240 13 7 chr12 94457616 94457766 -49328689 - AluSq SINE Alu -30 283 133 234 116 0 0 chr12 94457774 94457817 -49328638 + (TG)n Simple_repeat Simple_repeat 2 44 0 1063 102 25 0 chr12 94458340 94458497 -49327958 - L1P LINE L1 -2673 3473 3313 329 345 58 9 chr12 94458791 94459119 -49327336 + L1ME4a LINE L1 5548 5891 -230 618 231 25 0 chr12 94459327 94459476 -49326979 - AluJb SINE Alu 0 318 167 2320 77 3 10 chr12 94459493 94459790 -49326665 - AluY SINE Alu -16 295 1 2124 52 0 4 chr12 94459815 94460084 -49326371 - L1PA6 LINE L1 0 6154 5887 2273 117 0 0 chr12 94460216 94460514 -49325941 - AluSg SINE Alu -12 298 1 2353 80 10 3 chr12 94461541 94461843 -49324612 - AluSc SINE Alu 0 309 6 526 277 8 0 chr12 94461858 94461977 -49324478 + MER5A DNA MER1_type 69 188 -1 233 254 18 0 chr12 94462024 94462079 -49324376 - MLT1K LTR MaLR -48 540 485 1192 200 109 72 chr12 94463107 94463191 -49323264 - MER31-int LTR ERV1 -1706 3230 3151 1960 156 3 3 chr12 94463191 94463498 -49322957 + AluJb SINE Alu 3 309 -3 1192 200 109 72 chr12 94463498 94463897 -49322558 - MER31-int LTR ERV1 -1785 3151 2729 881 110 0 29 chr12 94463925 94464061 -49322394 + L1PA10 LINE L1 6035 6166 -2 1692 158 30 26 chr12 94464079 94464382 -49322073 + AluSx SINE Alu 1 304 -8 452 245 0 7 chr12 94464451 94464724 -49321731 + AluSg SINE Alu 2 272 -38 1118 29 0 7 chr12 94464733 94464872 -49321583 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 322 111 0 19 chr12 94464895 94464949 -49321506 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 8197 63 9 1 chr12 94465111 94466174 -49320281 - L1P LINE L1 -1365 4781 3710 1791 211 62 114 chr12 94466275 94467000 -49319455 + HAL1 LINE L1 1178 1864 -643 1254 197 229 24 chr12 94467787 94468163 -49318292 - SATR1 Satellite Satellite -6 464 12 2328 204 179 14 chr12 94468191 94470548 -49315907 - SATR1 Satellite Satellite -2 2745 1 250 264 94 38 chr12 94470669 94470775 -49315680 - L2 LINE L2 -1 3312 3201 638 238 21 67 chr12 94470900 94471093 -49315362 - MER63A DNA MER1_type -18 192 9 307 323 55 0 chr12 94471136 94471263 -49315192 - L2 LINE L2 -247 3066 2933 209 108 27 0 chr12 94472819 94472856 -49313599 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 258 324 65 43 chr12 94473784 94473923 -49312532 - MIR SINE MIR -83 179 38 1352 39 0 0 chr12 94474209 94474365 -49312090 - AluY SINE Alu -155 156 1 191 311 33 0 chr12 94474531 94474592 -49311863 + L2 LINE L2 3201 3263 -9 2013 155 3 0 chr12 94474863 94475167 -49311288 - AluSp SINE Alu -8 305 1 1602 170 34 8 chr12 94475171 94475559 -49310896 - L1M2 LINE L1 -4732 2117 1720 370 143 16 0 chr12 94475595 94475658 -49310797 + AluY SINE Alu 1 64 -235 1092 201 221 25 chr12 94475795 94476393 -49310062 + SATR1 Satellite Satellite 1 715 -1 502 216 42 48 chr12 94476449 94476616 -49309839 - MER58C DNA MER1_type -5 210 45 4921 97 9 10 chr12 94477271 94478608 -49307847 - L1PA7 LINE L1 -229 5925 4595 944 254 36 5 chr12 94479074 94479298 -49307157 - MIR SINE MIR -31 231 1 2065 113 28 3 chr12 94479385 94479667 -49306788 + AluSx SINE Alu 1 289 -23 633 190 0 0 chr12 94480099 94480220 -49306235 + AluSp/q SINE Alu 192 312 -1 254 239 15 0 chr12 94481503 94481570 -49304885 - MER115 DNA AcHobo -25 668 601 1845 85 4 4 chr12 94481575 94481823 -49304632 + AluY SINE Alu 62 309 -2 1575 163 21 42 chr12 94481839 94482148 -49304307 + AluSx SINE Alu 1 303 0 23 0 0 0 chr12 94482425 94482448 -49304007 + AT_rich Low_complexity Low_complexity 1 23 0 760 194 16 0 chr12 94482448 94482577 -49303878 - AluJb SINE Alu -23 289 159 1790 179 140 17 chr12 94482720 94483268 -49303187 - SATR1 Satellite Satellite 0 615 1 2339 173 118 10 chr12 94483297 94484122 -49302333 - SATR1 Satellite Satellite -1 914 1 340 239 194 0 chr12 94484360 94484515 -49301940 + MER2 DNA MER2_type 160 344 -1 2014 122 7 0 chr12 94484633 94484912 -49301543 + AluSx SINE Alu 23 303 -9 2324 89 7 7 chr12 94484973 94485276 -49301179 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr12 94486560 94486583 -49299872 + AT_rich Low_complexity Low_complexity 1 23 0 1687 239 50 9 chr12 94489147 94489591 -49296864 - LTR40b LTR ERVL 0 462 1 2712 198 31 15 chr12 94490159 94490769 -49295686 + L1ME1 LINE L1 5542 6161 -5 2711 125 9 41 chr12 94491362 94491802 -49294653 + MSTB LTR MaLR 1 426 0 2032 159 0 7 chr12 94492100 94492408 -49294047 + AluSx SINE Alu 1 306 -6 1771 175 16 3 chr12 94494336 94494639 -49291816 - 7SLRNA srpRNA srpRNA -13 307 1 205 275 99 23 chr12 94495543 94495674 -49290781 + L2 LINE L2 2610 2750 -564 206 308 0 0 chr12 94497752 94497804 -49288651 + L2 LINE L2 3221 3272 0 1653 185 16 32 chr12 94497950 94498329 -49288126 + AluJo SINE Alu 4 377 0 1861 130 19 16 chr12 94498351 94498658 -49287797 + AluSq SINE Alu 1 308 -5 330 241 141 116 chr12 94500895 94501327 -49285128 - LTR33A LTR ERVL -15 508 66 2210 173 108 11 chr12 94502459 94503094 -49283361 + SATR1 Satellite Satellite 1 696 -1 1302 202 216 42 chr12 94503605 94504383 -49282072 - SATR1 Satellite Satellite -2 912 1 423 279 118 11 chr12 94506541 94506803 -49279652 - L1M4 LINE L1 -2299 3847 3558 5860 173 43 9 chr12 94507265 94508428 -49278027 - L1 LINE L1 -1289 4857 3647 239 71 24 0 chr12 94508428 94508470 -49277985 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5860 173 43 9 chr12 94508470 94508567 -49277888 - L1 LINE L1 -2499 3647 3555 835 202 94 22 chr12 94508659 94508882 -49277573 + LTR54 LTR ERV1 1 239 -271 767 178 8 0 chr12 94508917 94509046 -49277409 + AluJo SINE Alu 5 134 -178 21 36 0 0 chr12 94509046 94509074 -49277381 + AT_rich Low_complexity Low_complexity 1 28 0 2543 47 0 28 chr12 94509163 94509482 -49276973 - AluY SINE Alu -1 310 1 5204 41 0 5 chr12 94510152 94510783 -49275672 + L1PA5 LINE L1 5520 6147 -7 508 216 46 7 chr12 94511151 94511304 -49275151 + L1MD1 LINE L1 2521 2679 -3467 3992 223 66 17 chr12 94511322 94512838 -49273617 + L1MD1 LINE L1 4639 6241 -1 4553 98 44 42 chr12 94513572 94514259 -49272196 + LTR12 LTR ERV1 1 688 0 7392 115 12 13 chr12 94514284 94515840 -49270615 + HERV9 LTR ERV1 59 1696 -6703 3377 131 0 0 chr12 94515839 94516349 -49270106 + HERV9 LTR ERV1 2463 2972 -5427 * 1286 102 0 29 chr12 94516348 94516554 -49269901 + HERV9 LTR ERV1 4756 4955 -3444 * 2127 161 112 94 chr12 94516535 94517268 -49269187 + Harlequin LTR ERV1 840 1593 -5303 944 26 0 0 chr12 94517268 94517381 -49269074 - L1PA2 LINE L1 -2 6153 6041 2127 161 112 94 chr12 94517381 94517532 -49268923 + Harlequin LTR ERV1 1593 1740 -5156 * 5224 102 5 1 chr12 94517530 94518301 -49268154 + Harlequin LTR ERV1 7626 8399 0 5026 69 23 29 chr12 94518301 94518993 -49267462 + LTR12 LTR ERV1 1 688 0 26 30 0 0 chr12 94519005 94519038 -49267417 + AT_rich Low_complexity Low_complexity 1 33 0 182 333 49 25 chr12 94519122 94519203 -49267252 - MIR SINE MIR -64 144 62 * 342 320 120 15 chr12 94519198 94519398 -49267057 - MIR SINE MIR 0 262 42 324 0 0 0 chr12 94519495 94519531 -49266924 + (CA)n Simple_repeat Simple_repeat 2 37 0 1304 182 27 116 chr12 94519698 94520104 -49266351 - MLT1A2 LTR MaLR -1 373 4 22 0 0 0 chr12 94520162 94520184 -49266271 + AT_rich Low_complexity Low_complexity 1 22 0 354 285 50 88 chr12 94520343 94520603 -49265852 + L1MEc LINE L1 22 271 -6125 824 260 64 20 chr12 94520659 94521005 -49265450 + L1MEc LINE L1 358 718 -5678 5549 149 32 3 chr12 94521032 94522383 -49264072 - Tigger1 DNA MER2_type -1 2417 987 2876 176 103 10 chr12 94522416 94523029 -49263426 - Tigger1 DNA MER2_type -1744 674 5 596 263 61 83 chr12 94523029 94523626 -49262829 + L1MEc LINE L1 739 1309 -5087 2135 106 0 7 chr12 94523626 94523909 -49262546 + AluSg SINE Alu 1 281 -29 596 263 61 83 chr12 94523909 94524257 -49262198 + L1MEc LINE L1 1309 1663 -4733 45 34 0 0 chr12 94524263 94524322 -49262133 + AT_rich Low_complexity Low_complexity 1 59 0 386 252 25 82 chr12 94524325 94524484 -49261971 + L1MEc LINE L1 3096 3245 -2970 225 256 16 91 chr12 94524928 94525049 -49261406 + L2 LINE L2 2937 3048 -224 24 0 0 0 chr12 94525496 94525520 -49260935 + AT_rich Low_complexity Low_complexity 1 24 0 7371 86 2 10 chr12 94525687 94527342 -49259113 - HERVL-A1 LTR ERVL -3907 1747 1 3275 72 0 39 chr12 94527342 94527799 -49258656 - MLT2A1 LTR ERVL 0 444 6 543 157 12 0 chr12 94527805 94527888 -49258567 + LOR1a LTR ERV1 414 497 0 21 0 0 0 chr12 94528135 94528156 -49258299 + AT_rich Low_complexity Low_complexity 1 21 0 260 208 39 0 chr12 94529103 94529180 -49257275 + (TA)n Simple_repeat Simple_repeat 1 80 0 255 281 67 22 chr12 94529208 94529297 -49257158 + L2 LINE L2 3208 3300 -13 21 36 0 0 chr12 94529317 94529345 -49257110 + AT_rich Low_complexity Low_complexity 1 28 0 236 192 0 19 chr12 94529522 94529574 -49256881 + (CA)n Simple_repeat Simple_repeat 2 52 0 181 313 114 46 chr12 94529914 94530045 -49256410 - L2 LINE L2 -2881 433 294 21 36 0 0 chr12 94530071 94530099 -49256356 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 94530647 94530668 -49255787 + AT_rich Low_complexity Low_complexity 1 21 0 327 319 84 73 chr12 94530893 94531319 -49255136 + L1M4 LINE L1 4480 4910 -1236 549 284 78 58 chr12 94531695 94532290 -49254165 + L1ME1 LINE L1 5265 5876 -290 509 30 15 0 chr12 94532448 94532515 -49253940 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1378 192 21 38 chr12 94533067 94533354 -49253101 + AluJo SINE Alu 1 282 -30 1463 213 51 19 chr12 94533396 94533771 -49252684 + MER39 LTR ERV1 301 687 -20 22 0 0 0 chr12 94534752 94534774 -49251681 + AT_rich Low_complexity Low_complexity 1 22 0 228 329 40 0 chr12 94534951 94535027 -49251428 + L2 LINE L2 3151 3229 -43 677 254 162 18 chr12 94535117 94535389 -49251066 + L1M4 LINE L1 4895 5205 -941 352 143 14 0 chr12 94535390 94535460 -49250995 + L1MB8 LINE L1 6106 6176 -2 319 228 81 27 chr12 94535465 94535614 -49250841 + L1M4 LINE L1 4404 4560 -1586 21 0 0 0 chr12 94535936 94535957 -49250498 + AT_rich Low_complexity Low_complexity 1 21 0 962 245 57 6 chr12 94537281 94537616 -49248839 + L1ME2 LINE L1 3764 4115 -2031 906 271 194 24 chr12 94537588 94538041 -49248414 + L1ME2 LINE L1 5626 6155 -9 * 212 353 29 0 chr12 94538321 94538423 -49248032 + MIR SINE MIR 84 188 -74 501 296 74 34 chr12 94538673 94539025 -49247430 + L1M4 LINE L1 3621 3986 -2160 314 245 20 20 chr12 94540469 94540567 -49245888 + LTR16C LTR ERVL 391 488 -3 186 43 0 0 chr12 94540567 94540590 -49245865 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 276 53 0 0 chr12 94540886 94540924 -49245531 + (TC)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 94541156 94541178 -49245277 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr12 94542329 94542350 -49244105 + AT_rich Low_complexity Low_complexity 1 21 0 6993 209 37 26 chr12 94543199 94543899 -49242556 - L1MA9 LINE L1 -38 6274 5583 2196 123 0 3 chr12 94543899 94544200 -49242255 - AluSx SINE Alu -12 300 1 6993 209 37 26 chr12 94544200 94546095 -49240360 - L1MA9 LINE L1 -729 5583 3656 291 263 13 0 chr12 94546226 94546302 -49240153 + MER94 DNA DNA 56 132 -2 391 59 20 0 chr12 94546427 94546478 -49239977 - MLT1C LTR MaLR -44 423 372 313 104 0 0 chr12 94546486 94546534 -49239921 - L1PA5 LINE L1 0 6154 6107 796 66 0 0 chr12 94546534 94546640 -49239815 + L1P2 LINE L1 5674 5779 -375 23 33 0 0 chr12 94546644 94546674 -49239781 + AT_rich Low_complexity Low_complexity 1 30 0 1120 317 9 21 chr12 94548431 94548851 -49237604 + L1MC4a LINE L1 6442 6856 -952 488 306 40 12 chr12 94548857 94549030 -49237425 + L1ME LINE L1 352 529 -5887 269 292 130 0 chr12 94549188 94549311 -49237144 + L1M3c LINE L1 1472 1965 -4610 206 200 40 0 chr12 94549314 94549364 -49237091 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr12 94549405 94549426 -49237029 + AT_rich Low_complexity Low_complexity 1 21 0 472 280 102 14 chr12 94549480 94549902 -49236553 + L1ME LINE L1 1334 1860 -4566 9224 78 18 34 chr12 94550136 94551487 -49234968 - SVA Other Other 0 1386 58 231 326 0 45 chr12 94551556 94551688 -49234767 + L1ME LINE L1 2149 2274 -4333 680 235 71 18 chr12 94551690 94551860 -49234595 - MER5A DNA MER1_type -1 188 10 2182 238 78 46 chr12 94552012 94552962 -49233493 + L1ME LINE L1 2398 3377 -3049 21 57 0 0 chr12 94553402 94553437 -49233018 + AT_rich Low_complexity Low_complexity 1 35 0 272 269 34 87 chr12 94555223 94555372 -49231083 - MIR SINE MIR -64 198 58 294 141 127 0 chr12 94555708 94555779 -49230676 - L1MC5 LINE L1 -921 7040 6961 462 317 102 64 chr12 94556018 94556138 -49230317 - L1MC4a LINE L1 -1217 6591 6477 1666 174 61 30 chr12 94556138 94556500 -49229955 + THE1C LTR MaLR 1 373 -2 462 317 102 64 chr12 94556500 94556897 -49229558 - L1MC4a LINE L1 -1331 6477 6054 24 32 0 0 chr12 94556929 94556960 -49229495 + AT_rich Low_complexity Low_complexity 1 31 0 872 312 50 57 chr12 94556996 94557641 -49228814 - L1MC4a LINE L1 -1876 5932 5293 8802 229 76 20 chr12 94557677 94558707 -49227748 - L1MB2 LINE L1 -19 7112 6142 2229 100 7 3 chr12 94558707 94559017 -49227438 - AluSx SINE Alu -1 311 1 8802 229 76 20 chr12 94559017 94561945 -49224510 - L1MB2 LINE L1 -989 6142 2917 2026 245 34 28 chr12 94561955 94562428 -49224027 + MER70B LTR ERVL 1 476 -102 1730 237 13 18 chr12 94562459 94563160 -49223295 + MER70B-int LTR ERVL 2 743 -4280 * 4856 188 22 21 chr12 94563151 94564066 -49222389 + MER70B-int LTR ERVL 4102 5017 -6 2488 230 2 8 chr12 94564078 94564557 -49221898 + MER70B LTR ERVL 1 476 -102 22 0 0 0 chr12 94564601 94564623 -49221832 + AT_rich Low_complexity Low_complexity 1 22 0 268 245 49 28 chr12 94564632 94564775 -49221680 - L1MB2 LINE L1 -4260 2848 2703 297 67 22 0 chr12 94564828 94564873 -49221582 + MADE1 DNA Mariner 1 46 -34 1536 236 44 11 chr12 94564889 94565325 -49221130 - L1MB2 LINE L1 -4568 2540 2091 795 269 58 34 chr12 94565364 94565781 -49220674 - L1MB2 LINE L1 -4800 2237 1811 2123 130 44 0 chr12 94565895 94566233 -49220222 - THE1A LTR MaLR -2 353 1 254 341 40 23 chr12 94566373 94566546 -49219909 - L1MB2 LINE L1 -6854 176 1 1904 121 35 7 chr12 94566922 94567211 -49219244 - AluSx SINE Alu -15 297 1 32 0 0 0 chr12 94567406 94567438 -49219017 + AT_rich Low_complexity Low_complexity 1 32 0 446 383 84 0 chr12 94567846 94568073 -49218382 - MIR SINE MIR -12 250 5 1018 348 89 51 chr12 94568080 94568301 -49218154 - L2 LINE L2 -4 3309 3098 2098 73 39 0 chr12 94568301 94568465 -49217990 - AluY SINE Alu -14 297 116 459 0 0 0 chr12 94568465 94568516 -49217939 + (TG)n Simple_repeat Simple_repeat 2 52 0 2098 73 39 0 chr12 94568516 94568637 -49217818 - AluY SINE Alu -195 116 1 1018 348 89 51 chr12 94568637 94569436 -49217019 - L2 LINE L2 -215 3098 2199 1206 217 60 74 chr12 94569436 94569540 -49216915 + MLT1D LTR MaLR 1 105 -400 1675 185 21 0 chr12 94569540 94569827 -49216628 - AluSx SINE Alu -19 293 1 1206 217 60 74 chr12 94569827 94570234 -49216221 + MLT1D LTR MaLR 105 505 0 1018 348 89 51 chr12 94570234 94570673 -49215782 - L2 LINE L2 -1114 2199 1778 242 232 18 0 chr12 94570715 94570771 -49215684 - MLT1L LTR MaLR -363 252 196 227 313 83 14 chr12 94570839 94570983 -49215472 - L2 LINE L2 -2559 755 602 217 337 12 12 chr12 94571088 94571171 -49215284 + L3 LINE CR1 1494 1576 -1 214 282 0 28 chr12 94571402 94571473 -49214982 + CT-rich Low_complexity Low_complexity 1 69 0 7335 206 73 24 chr12 94571598 94574384 -49212071 - L1MA5 LINE L1 0 7362 4714 1824 189 126 5 chr12 94574384 94574766 -49211689 - MSTA LTR MaLR 0 428 1 7335 206 73 24 chr12 94574766 94575173 -49211282 - L1MA5 LINE L1 -2648 4714 4328 2750 17 0 0 chr12 94575173 94575475 -49210980 - AluYb8 SINE Alu -14 304 3 7335 206 73 24 chr12 94575475 94575995 -49210460 - L1MA5 LINE L1 -3034 4328 3835 1553 176 66 0 chr12 94575995 94576268 -49210187 - AluJb SINE Alu -3 309 19 7335 206 73 24 chr12 94576268 94577119 -49209336 - L1MA5 LINE L1 -3527 3835 2536 3224 112 14 16 chr12 94577125 94577634 -49208821 - MER75 DNA T2_type -6 508 1 3041 246 65 93 chr12 94577634 94579153 -49207302 - L1MA5 LINE L1 -4670 2539 1064 363 306 33 0 chr12 94579176 94579297 -49207158 - L1MA5 LINE L1 -6575 634 510 229 298 36 0 chr12 94579303 94579387 -49207068 + MIR SINE MIR 103 189 -73 211 302 116 16 chr12 94580381 94580510 -49205945 + MIR SINE MIR 93 234 -28 328 282 56 90 chr12 94580833 94581058 -49205397 - MIR SINE MIR -31 231 17 3661 154 33 45 chr12 94581137 94581871 -49204584 + LTR8A LTR ERV1 3 727 0 322 111 0 0 chr12 94582740 94582785 -49203670 - MER50 LTR ERV1 -1 733 689 207 0 0 0 chr12 94582903 94582926 -49203529 + (TA)n Simple_repeat Simple_repeat 2 24 0 871 230 91 0 chr12 94584206 94584393 -49202062 + MER39 LTR ERV1 1 204 -503 * 1092 129 11 6 chr12 94584379 94584557 -49201898 + MER39 LTR ERV1 491 669 -38 1057 68 0 0 chr12 94585143 94585275 -49201180 - AluY SINE Alu -179 132 1 4645 105 4 13 chr12 94585371 94586059 -49200396 + L1PA13 LINE L1 5477 6158 -5 2433 62 3 13 chr12 94586062 94586370 -49200085 + AluY SINE Alu 1 305 -6 21 36 0 0 chr12 94586471 94586499 -49199956 + AT_rich Low_complexity Low_complexity 1 28 0 786 171 8 0 chr12 94586499 94586628 -49199827 - AluJo SINE Alu -178 134 5 856 215 94 22 chr12 94586663 94586886 -49199569 - LTR54 LTR ERV1 -271 239 1 8659 170 12 19 chr12 94586978 94589571 -49196884 + L1MA3 LINE L1 3555 6136 -169 1797 87 4 0 chr12 94589593 94589845 -49196610 + L1PA6 LINE L1 5902 6154 0 851 124 0 14 chr12 94590058 94590203 -49196252 + L1MA3 LINE L1 6132 6274 -31 322 263 18 44 chr12 94590215 94590329 -49196126 - L1MC4 LINE L1 -1339 6703 6593 1594 171 100 0 chr12 94590519 94590840 -49195615 + MER46B DNA MER2_type 9 236 0 292 222 0 0 chr12 94590869 94590923 -49195532 + MIR SINE MIR 111 164 -98 1032 249 26 0 chr12 94591259 94591524 -49194931 - L1MB7 LINE L1 -34 6150 5879 3432 126 22 70 chr12 94592207 94592875 -49193580 - L1PB4 LINE L1 -7 6149 5514 306 0 0 0 chr12 94594163 94594197 -49192258 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 94594328 94594348 -49192107 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 208 0 62 0 chr12 94594463 94594495 -49191960 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 363 318 175 0 chr12 94594685 94594874 -49191581 + MIR SINE MIR 3 224 -38 240 59 0 0 chr12 94594929 94594963 -49191492 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2421 39 0 0 chr12 94594963 94595244 -49191211 - AluYa5 SINE Alu -30 281 1 5183 41 0 5 chr12 94595914 94596545 -49189910 + L1PA5 LINE L1 5520 6147 -7 296 274 116 30 chr12 94596691 94596994 -49189461 - L1MEc LINE L1 -5284 1112 784 3121 173 103 10 chr12 94597038 94597651 -49188804 + Tigger1 DNA MER2_type 5 674 -1744 5809 149 32 4 chr12 94597684 94599036 -49187419 + Tigger1 DNA MER2_type 987 2417 -1 778 279 60 23 chr12 94599063 94599411 -49187044 - L1MEc LINE L1 -5678 718 358 358 285 50 88 chr12 94599467 94599727 -49186728 - L1MEc LINE L1 -6125 271 22 22 0 0 0 chr12 94599886 94599908 -49186547 + AT_rich Low_complexity Low_complexity 1 22 0 1385 196 12 105 chr12 94599966 94600374 -49186081 + MLT1A2 LTR MaLR 4 373 -1 288 0 0 0 chr12 94600541 94600573 -49185882 + (TG)n Simple_repeat Simple_repeat 2 33 0 356 320 120 15 chr12 94600670 94600870 -49185585 + MIR SINE MIR 42 262 0 186 333 49 25 chr12 94600865 94600946 -49185509 + MIR SINE MIR 62 144 -64 * 26 30 0 0 chr12 94601030 94601063 -49185392 + AT_rich Low_complexity Low_complexity 1 33 0 5004 69 23 29 chr12 94601075 94601767 -49184688 - LTR12 LTR ERV1 0 688 1 5492 100 7 1 chr12 94601767 94602537 -49183918 - HERV9 LTR ERV1 0 8399 7626 2313 170 108 87 chr12 94602535 94602686 -49183769 - HERV9 LTR ERV1 -5156 1740 1594 * 944 26 0 0 chr12 94602686 94602799 -49183656 + L1PA2 LINE L1 6041 6153 -2 2313 170 108 87 chr12 94602799 94603530 -49182925 - HERV9 LTR ERV1 -5302 1594 840 1327 118 23 27 chr12 94603497 94603717 -49182738 - HERV9 LTR ERV1 -3425 4974 4756 * 3580 129 0 0 chr12 94603716 94604226 -49182229 - HERV9 LTR ERV1 -5427 2972 2463 * 7756 118 12 14 chr12 94604207 94605781 -49180674 - HERV9 LTR ERV1 -6687 1712 59 4511 99 44 42 chr12 94605806 94606493 -49179962 - LTR12 LTR ERV1 0 688 1 4173 220 69 18 chr12 94607227 94608741 -49177714 - L1MD1 LINE L1 -1 6241 4639 550 216 46 7 chr12 94608759 94608912 -49177543 - L1MD1 LINE L1 -3467 2679 2521 5248 36 0 5 chr12 94609280 94609911 -49176544 - L1PA5 LINE L1 -7 6147 5520 28 48 0 0 chr12 94610992 94611034 -49175421 + AT_rich Low_complexity Low_complexity 1 42 0 36 23 0 0 chr12 94611097 94611140 -49175315 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr12 94611305 94611329 -49175126 + AT_rich Low_complexity Low_complexity 1 24 0 1506 209 9 19 chr12 94611521 94611836 -49174619 - AluJo SINE Alu 0 312 1 316 275 54 98 chr12 94611921 94612216 -49174239 + L1ME4a LINE L1 5753 6034 -87 4084 203 40 27 chr12 94612288 94613281 -49173174 - L1MA10 LINE L1 -1 6333 5328 27 0 0 0 chr12 94613456 94613483 -49172972 + AT_rich Low_complexity Low_complexity 1 27 0 183 129 0 0 chr12 94613820 94613851 -49172604 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr12 94614328 94614358 -49172097 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 226 317 12 0 chr12 94614488 94614570 -49171885 + Charlie8 DNA MER1_type 144 226 -2191 264 338 84 0 chr12 94615185 94615327 -49171128 - HsTC2 DNA Tc2 -1156 742 589 305 225 0 0 chr12 94615423 94615494 -49170961 - HsTC2 DNA Tc2 -1610 288 218 1734 177 4 0 chr12 94615663 94615954 -49170501 - AluSq SINE Alu 0 302 11 265 299 61 41 chr12 94616079 94616226 -49170229 + MIR SINE MIR 5 154 -108 42 36 0 0 chr12 94616241 94616297 -49170158 + AT_rich Low_complexity Low_complexity 1 56 0 21 89 0 0 chr12 94616319 94616375 -49170080 + AT_rich Low_complexity Low_complexity 1 56 0 2302 133 19 19 chr12 94616587 94616962 -49169493 + THE1C LTR MaLR 1 375 0 4201 113 119 7 chr12 94616962 94617667 -49168788 + THE1C-int LTR MaLR 1 784 -796 2425 94 9 11 chr12 94617648 94617998 -49168457 + THE1C-int LTR MaLR 1232 1580 0 * 1554 172 58 18 chr12 94618000 94618331 -49168124 + THE1C LTR MaLR 3 355 0 1662 219 19 6 chr12 94618488 94618813 -49167642 - MSTB LTR MaLR -2 424 96 8404 204 22 6 chr12 94618816 94620428 -49166027 - MSTB-int LTR MaLR -13 1638 1 2184 180 32 10 chr12 94620449 94620854 -49165601 - MSTB LTR MaLR -12 414 1 24 67 0 0 chr12 94621082 94621127 -49165328 + AT_rich Low_complexity Low_complexity 1 45 0 767 295 68 0 chr12 94621435 94621672 -49164783 + MIR SINE MIR 10 262 0 204 358 72 24 chr12 94621769 94622101 -49164354 + L2 LINE L2 2444 2791 -523 5991 182 29 11 chr12 94622103 94624990 -49161465 - L1MA8 LINE L1 -5 7705 4673 1064 213 53 18 chr12 94624991 94625216 -49161239 - MSTD LTR MaLR -48 348 116 191 211 39 0 chr12 94625221 94625273 -49161182 + L2 LINE L2 2910 2963 -309 796 28 19 9 chr12 94625312 94625419 -49161036 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 680 147 16 32 chr12 94625465 94625599 -49160856 - MSTD LTR MaLR -293 103 2 3575 256 43 42 chr12 94625601 94627921 -49158534 - L1MA8 LINE L1 -2900 4665 2635 2151 118 0 0 chr12 94627921 94628209 -49158246 + AluSx SINE Alu 1 288 -24 3575 256 43 42 chr12 94628209 94628709 -49157746 - L1MA8 LINE L1 -4930 2635 2137 236 259 0 17 chr12 94629669 94629727 -49156728 - L1MA8 LINE L1 -6084 1412 1356 228 312 88 24 chr12 94629751 94629921 -49156534 + L2 LINE L2 2793 2973 -341 346 380 97 15 chr12 94630010 94630339 -49156116 - L2 LINE L2 -2256 1058 703 496 149 0 0 chr12 94630340 94630414 -49156041 + MLT2D LTR ERVL 3 76 -338 182 326 146 0 chr12 94630807 94630896 -49155559 + MIR SINE MIR 40 141 -67 21 36 0 0 chr12 94631698 94631726 -49154729 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 94633548 94633577 -49152878 + AT_rich Low_complexity Low_complexity 1 29 0 692 150 30 8 chr12 94633881 94634014 -49152441 - L1MB1 LINE L1 -5 6163 6028 6399 57 0 0 chr12 94634018 94634815 -49151640 - L1PA5 LINE L1 -15 6139 5343 1262 149 64 20 chr12 94634814 94635063 -49151392 - L1MB1 LINE L1 -124 6044 5785 * 478 79 91 12 chr12 94635087 94635252 -49151203 + (TA)n Simple_repeat Simple_repeat 1 178 0 2220 162 4 63 chr12 94635252 94635727 -49150728 - L1MB1 LINE L1 -375 5793 5347 2294 72 0 0 chr12 94635958 94636237 -49150218 + AluSc SINE Alu 19 297 -12 221 307 79 0 chr12 94637228 94637329 -49149126 + MIR SINE MIR 98 206 -56 1726 163 16 3 chr12 94637519 94637832 -49148623 - L1M2 LINE L1 -707 5584 5268 317 282 18 0 chr12 94637920 94638030 -49148425 - L1MC4a LINE L1 -1955 5853 5742 31 44 0 0 chr12 94638183 94638228 -49148227 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 94638380 94638401 -49148054 + AT_rich Low_complexity Low_complexity 1 21 0 1970 128 0 0 chr12 94638405 94638717 -49147738 + AluSx SINE Alu 1 312 0 714 185 21 27 chr12 94640993 94641146 -49145309 - MER20 DNA MER1_type -52 167 1 387 252 28 19 chr12 94641359 94641466 -49144989 - MIR SINE MIR -4 258 151 2213 74 0 11 chr12 94642538 94642823 -49143632 + AluY SINE Alu 1 282 -29 1933 150 3 3 chr12 94642933 94643260 -49143195 - L1P LINE L1 -2519 3627 3301 189 0 0 0 chr12 94643303 94643324 -49143131 + (T)n Simple_repeat Simple_repeat 1 21 0 991 317 38 30 chr12 94645062 94645557 -49140898 - MLT1J LTR MaLR -8 503 5 194 265 108 36 chr12 94646537 94646620 -49139835 + MER5A DNA MER1_type 36 124 -65 956 293 16 0 chr12 94647447 94647696 -49138759 + MIR SINE MIR 2 254 -8 1327 107 122 0 chr12 94648911 94649116 -49137339 - MER30 DNA MER1_type 0 230 1 30 27 0 0 chr12 94649893 94649930 -49136525 + AT_rich Low_complexity Low_complexity 1 37 0 1150 308 72 67 chr12 94651762 94652414 -49134041 + L2 LINE L2 2480 3147 -166 461 262 78 35 chr12 94652454 94652710 -49133745 - LTR37B LTR ERV1 -5 463 197 261 207 17 0 chr12 94652804 94652862 -49133593 - LTR37B LTR ERV1 -403 65 7 781 313 59 13 chr12 94652942 94653246 -49133209 - LTR16C LTR ERVL 0 491 174 194 0 39 0 chr12 94653321 94653347 -49133108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 304 267 117 53 chr12 94653569 94653702 -49132753 + MIR SINE MIR 10 150 -63 21 36 0 0 chr12 94654642 94654670 -49131785 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr12 94654857 94654911 -49131544 + AT_rich Low_complexity Low_complexity 1 54 0 295 315 27 18 chr12 94654980 94655091 -49131364 + L2 LINE L2 3201 3312 -1 733 315 69 50 chr12 94655341 94655638 -49130817 - L2 LINE L2 -807 2507 2196 1466 210 52 11 chr12 94655638 94655986 -49130469 - MLT1A1 LTR MaLR -3 362 1 733 315 69 50 chr12 94655986 94656167 -49130288 - L2 LINE L2 -1118 2196 2020 497 335 40 6 chr12 94656171 94656347 -49130108 + L2 LINE L2 1848 2029 -1285 186 98 59 0 chr12 94656783 94656834 -49129621 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 436 286 141 4 chr12 94657317 94657549 -49128906 + L1ME LINE L1 5355 5639 -525 312 310 172 0 chr12 94657566 94657711 -49128744 - MER5A DNA MER1_type 0 189 20 490 103 23 0 chr12 94657956 94658043 -49128412 + (TG)n Simple_repeat Simple_repeat 2 90 0 304 261 0 33 chr12 94658113 94658205 -49128250 - L1MC4 LINE L1 -1340 6702 6614 3751 75 2 0 chr12 94658737 94659231 -49127224 - L1PA7 LINE L1 -8 6146 5652 272 337 0 0 chr12 94659360 94659443 -49127012 + MIR SINE MIR 65 147 -115 316 283 11 11 chr12 94661014 94661106 -49125349 - MER5A DNA MER1_type -6 183 92 1772 154 43 57 chr12 94661106 94661475 -49124980 + THE1B LTR MaLR 1 364 0 9730 86 15 147 chr12 94661475 94663296 -49123159 + THE1B-int LTR MaLR 1 1580 0 1074 145 77 43 chr12 94663296 94663503 -49122952 + THE1B LTR MaLR 1 214 -150 * 1308 159 8 35 chr12 94663502 94663759 -49122696 + THE1B LTR MaLR 115 364 0 436 308 111 0 chr12 94663816 94663988 -49122467 + MIR SINE MIR 40 230 -32 25 75 0 0 chr12 94664482 94664535 -49121920 + AT_rich Low_complexity Low_complexity 1 53 0 188 196 0 20 chr12 94664672 94664723 -49121732 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 284 254 57 41 chr12 94664781 94664903 -49121552 - L1ME LINE L1 -598 5568 5445 351 327 18 0 chr12 94665321 94665434 -49121021 + L2 LINE L2 2944 3058 -255 23 0 0 0 chr12 94665491 94665514 -49120941 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr12 94666060 94666087 -49120368 + (TG)n Simple_repeat Simple_repeat 2 28 0 1556 167 31 17 chr12 94666312 94666599 -49119856 + AluJo SINE Alu 1 291 -21 44 0 0 0 chr12 94666618 94666662 -49119793 + AT_rich Low_complexity Low_complexity 1 44 0 2208 147 21 0 chr12 94667796 94668367 -49118088 - L1P4 LINE L1 -567 5599 5021 1820 167 9 3 chr12 94668367 94668690 -49117765 + L1PA16 LINE L1 5836 6166 0 1515 226 62 54 chr12 94668714 94669215 -49117240 + MLT1D LTR MaLR 1 505 0 2162 115 0 0 chr12 94669250 94669538 -49116917 - AluSx SINE Alu -20 292 5 607 223 108 25 chr12 94672101 94672258 -49114197 + MIR SINE MIR 2 171 -91 2285 82 0 3 chr12 94672451 94672744 -49113711 - AluY SINE Alu -19 292 1 523 258 154 39 chr12 94672819 94673079 -49113376 - LTR50 LTR ERVL -505 290 1 881 220 11 21 chr12 94673956 94674147 -49112308 + MER58A DNA MER1_type 1 189 -35 2439 69 0 10 chr12 94674320 94674626 -49111829 - AluY SINE Alu -6 305 3 2389 119 11 21 chr12 94674814 94675193 -49111262 - THE1C LTR MaLR 0 375 1 255 207 17 0 chr12 94675646 94675704 -49110751 - MLT2B2 LTR ERVL 0 520 462 258 136 0 0 chr12 94675715 94675759 -49110696 + (CATA)n Simple_repeat Simple_repeat 2 45 0 * 2563 199 26 4 chr12 94675743 94676205 -49110250 - MLT2B2 LTR ERVL -40 475 4 264 122 0 0 chr12 94676992 94677033 -49109422 + (TA)n Simple_repeat Simple_repeat 1 41 0 226 365 0 0 chr12 94677856 94677930 -49108525 + MIR SINE MIR 78 151 -57 267 245 126 28 chr12 94678815 94678958 -49107497 + MER104 DNA Tc2 11 167 -13 27 0 0 0 chr12 94679355 94679382 -49107073 + AT_rich Low_complexity Low_complexity 1 27 0 215 200 36 18 chr12 94679716 94679771 -49106684 - MIR SINE MIR -112 150 95 184 344 0 0 chr12 94679788 94679849 -49106606 - L2 LINE L2 -2 3311 3251 * 199 267 0 0 chr12 94679805 94679850 -49106605 - MIR SINE MIR -13 249 205 2038 126 7 0 chr12 94680359 94680652 -49105803 + AluSx SINE Alu 1 295 -17 12028 100 13 9 chr12 94680656 94682453 -49104002 - L1P LINE L1 -1041 5105 3301 189 0 0 0 chr12 94682495 94682516 -49103939 + (T)n Simple_repeat Simple_repeat 1 21 0 732 121 0 9 chr12 94682894 94683010 -49103445 + L1MA3 LINE L1 6160 6274 -31 233 261 0 34 chr12 94683022 94683110 -49103345 - L1MC4 LINE L1 -1339 6703 6619 29 28 0 0 chr12 94683112 94683148 -49103307 + AT_rich Low_complexity Low_complexity 1 36 0 1612 178 100 0 chr12 94683327 94683648 -49102807 + MER46B DNA MER2_type 9 236 0 293 222 0 0 chr12 94683677 94683731 -49102724 + MIR SINE MIR 111 164 -98 1044 249 26 0 chr12 94684068 94684333 -49102122 - L1MB7 LINE L1 -34 6150 5879 3533 124 19 67 chr12 94685016 94685684 -49100771 - L1PB4 LINE L1 -7 6149 5514 306 0 0 0 chr12 94686972 94687006 -49099449 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 94687137 94687157 -49099298 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 208 0 62 0 chr12 94687272 94687304 -49099151 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 366 318 175 0 chr12 94687494 94687683 -49098772 + MIR SINE MIR 3 224 -38 240 59 0 0 chr12 94687738 94687772 -49098683 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2298 60 0 0 chr12 94687772 94688053 -49098402 - AluY SINE Alu -30 281 1 302 299 20 75 chr12 94688532 94688679 -49097776 + MER5A DNA MER1_type 3 141 -48 767 279 57 22 chr12 94688690 94689155 -49097300 + L1MC/D LINE L1 5203 5687 -743 1741 161 3 26 chr12 94689199 94689504 -49096951 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr12 94689505 94689526 -49096929 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 1147 56 0 14 chr12 94689906 94690050 -49096405 + AluY SINE Alu 1 142 -169 24 0 0 0 chr12 94690713 94690737 -49095718 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr12 94691793 94691818 -49094637 + (TG)n Simple_repeat Simple_repeat 2 26 0 845 283 103 35 chr12 94693194 94693562 -49092893 - MLT1J LTR MaLR -74 437 45 218 291 13 25 chr12 94693680 94693759 -49092696 - MIR SINE MIR -65 143 66 1378 145 5 23 chr12 94693990 94694211 -49092244 - AluJo SINE Alu -7 305 89 310 292 71 9 chr12 94694424 94694537 -49091918 + L2 LINE L2 3149 3268 -4 29 28 0 0 chr12 94695044 94695080 -49091375 + AT_rich Low_complexity Low_complexity 1 36 0 212 319 60 35 chr12 94695148 94695264 -49091191 + MIR SINE MIR 25 143 -65 1657 283 71 14 chr12 94695268 94695763 -49090692 - MLT1E LTR MaLR 0 593 71 681 292 18 6 chr12 94696325 94696496 -49089959 + MER5B DNA MER1_type 1 173 -5 275 237 82 52 chr12 94696516 94696613 -49089842 + MER5A DNA MER1_type 10 109 -80 369 241 62 27 chr12 94696853 94696965 -49089490 + MER117 DNA MER1_type 25 140 -57 3520 132 54 24 chr12 94697059 94697443 -49089012 - MER39B LTR ERV1 0 653 241 2292 152 87 0 chr12 94697443 94697858 -49088597 + LTR47A LTR ERVL 2 452 0 3520 132 54 24 chr12 94697858 94698103 -49088352 - MER39B LTR ERV1 -412 241 5 417 257 78 11 chr12 94698112 94698291 -49088164 - LTR48 LTR ERV1 -61 726 536 * 1166 154 5 198 chr12 94698268 94698697 -49087758 - LTR49 LTR ERV1 -245 350 5 378 0 0 0 chr12 94699727 94699769 -49086686 + (CA)n Simple_repeat Simple_repeat 1 42 0 192 182 0 0 chr12 94701696 94701740 -49084715 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 2157 128 40 6 chr12 94701829 94702181 -49084274 - THE1B LTR MaLR 0 364 1 860 224 28 6 chr12 94703284 94703463 -49082992 - MLT1D LTR MaLR 0 505 323 216 178 0 22 chr12 94703705 94703750 -49082705 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr12 94703857 94703878 -49082577 + AT_rich Low_complexity Low_complexity 1 21 0 252 108 0 0 chr12 94703968 94704005 -49082450 + LTR29 LTR ERV1 1 37 -585 315 317 77 14 chr12 94705970 94706178 -49080277 + LTR16C LTR ERVL 271 491 0 275 314 84 51 chr12 94706184 94706598 -49079857 - HAL1 LINE L1 -850 1657 1230 360 260 0 0 chr12 94706879 94706956 -49079499 - Tigger5 DNA MER2_type 0 2323 2247 299 243 86 0 chr12 94706998 94707068 -49079387 - Tigger5 DNA MER2_type -2245 78 3 999 109 40 30 chr12 94707098 94707300 -49079155 - L1MA7 LINE L1 -1 6290 6087 254 171 0 0 chr12 94707739 94707780 -49078675 + LTR48 LTR ERV1 2 42 -602 992 241 70 14 chr12 94707814 94708251 -49078204 + LTR48 LTR ERV1 129 628 -16 1843 156 0 0 chr12 94708936 94709254 -49077201 - AluSx SINE Alu 0 318 1 214 272 65 54 chr12 94709354 94709446 -49077009 - L2 LINE L2 -14 3299 3207 228 94 0 0 chr12 94709833 94709865 -49076590 + LTR29 LTR ERV1 1 32 -590 * 509 165 10 31 chr12 94709861 94709958 -49076497 + LTR49 LTR ERV1 494 588 -7 716 197 16 0 chr12 94709967 94710094 -49076361 + LTR49-int LTR ERV1 1 129 -6202 306 87 0 0 chr12 94710094 94710140 -49076315 + (TC)n Simple_repeat Simple_repeat 2 47 0 3221 193 46 61 chr12 94710142 94711370 -49075085 + LTR49-int LTR ERV1 114 1481 -4465 230 169 237 0 chr12 94711370 94711429 -49075026 + tRNA-Glu-GAG tRNA tRNA 3 75 0 499 121 22 11 chr12 94711472 94711563 -49074892 + LTR48B-int LTR ERV1 1291 1382 -4949 5696 179 60 89 chr12 94711666 94711977 -49074478 + LTR48B-int LTR ERV1 1355 1673 -4658 351 0 0 0 chr12 94711977 94712016 -49074439 + (TG)n Simple_repeat Simple_repeat 2 40 0 5696 179 60 89 chr12 94712016 94712830 -49073625 + LTR48B-int LTR ERV1 1673 2427 -3904 2168 116 0 0 chr12 94712830 94713122 -49073333 + AluSg SINE Alu 1 292 -18 5696 179 60 89 chr12 94713122 94713535 -49072920 + LTR48B-int LTR ERV1 2427 2850 -3481 1017 204 9 45 chr12 94713557 94713649 -49072806 + LTR48B-int LTR ERV1 5952 6046 -285 915 48 87 0 chr12 94713649 94713775 -49072680 - MER85 DNA T2_type -2 137 1 1017 204 9 45 chr12 94713775 94713903 -49072552 + LTR48B-int LTR ERV1 6046 6164 -167 1867 241 80 12 chr12 94714008 94714611 -49071844 + LTR48B LTR ERV1 1 644 0 1735 165 0 0 chr12 94715253 94715519 -49070936 - AluSx SINE Alu -46 266 1 22 0 0 0 chr12 94715521 94715543 -49070912 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 94716093 94716114 -49070341 + AT_rich Low_complexity Low_complexity 1 21 0 515 232 68 72 chr12 94716761 94716998 -49069457 + MER106A DNA MER1_type 1 236 0 194 227 0 15 chr12 94717962 94718028 -49068427 + GA-rich Low_complexity Low_complexity 2 66 0 1275 204 114 42 chr12 94718278 94718826 -49067629 - LTR48 LTR ERV1 0 729 203 29 60 0 0 chr12 94720301 94720351 -49066104 + AT_rich Low_complexity Low_complexity 1 50 0 374 189 0 0 chr12 94720429 94720503 -49065952 - MER116 DNA Mariner 0 80 7 183 253 205 0 chr12 94722328 94722411 -49064044 + MER5A DNA MER1_type 90 189 0 267 103 0 0 chr12 94722461 94722500 -49063955 + (TG)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr12 94722822 94722852 -49063603 + AT_rich Low_complexity Low_complexity 1 30 0 297 304 39 69 chr12 94723694 94723898 -49062557 + L2 LINE L2 3112 3309 -4 183 42 0 0 chr12 94725426 94725450 -49061005 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2034 97 4 4 chr12 94725453 94725731 -49060724 - AluSq SINE Alu -35 278 1 238 331 47 41 chr12 94726360 94726529 -49059926 + MLT1J LTR MaLR 4 173 -338 291 225 0 42 chr12 94726731 94726802 -49059653 + MLT1J LTR MaLR 395 462 -49 364 279 25 56 chr12 94727258 94727419 -49059036 - L2 LINE L2 -192 3080 2925 606 310 84 42 chr12 94727633 94728059 -49058396 - L2 LINE L2 -657 2657 2214 272 328 106 20 chr12 94728326 94728524 -49057931 - MIR SINE MIR -7 255 41 714 256 98 86 chr12 94728587 94729144 -49057311 - MER34B LTR ERV1 0 542 3 25 65 0 0 chr12 94729883 94729929 -49056526 + AT_rich Low_complexity Low_complexity 1 46 0 354 213 43 21 chr12 94730347 94730441 -49056014 - MLT2F LTR ERVL -531 132 37 393 222 128 0 chr12 94730688 94730805 -49055650 + L2 LINE L2 2136 2267 -1047 977 309 112 28 chr12 94730805 94731517 -49054938 + L2 LINE L2 2521 3313 0 1414 188 92 123 chr12 94733047 94733615 -49052840 + LTR49 LTR ERV1 1 550 -45 881 259 39 112 chr12 94733644 94734106 -49052349 + MLT1F1 LTR MaLR 9 436 -131 817 279 77 4 chr12 94734106 94734339 -49052116 - MLT1E1 LTR MaLR 0 654 405 562 226 26 32 chr12 94734353 94734558 -49051897 - MLT1E1 LTR MaLR -397 257 3 * 688 197 53 0 chr12 94734558 94734689 -49051766 + MLT1F1 LTR MaLR 430 567 0 27 62 0 0 chr12 94735084 94735132 -49051323 + AT_rich Low_complexity Low_complexity 1 48 0 38 39 0 0 chr12 94735500 94735552 -49050903 + AT_rich Low_complexity Low_complexity 1 52 0 325 308 23 70 chr12 94736189 94736361 -49050094 - MIR SINE MIR -50 212 49 180 0 0 0 chr12 94736945 94736965 -49049490 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 186 189 0 0 chr12 94737775 94737812 -49048643 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 3812 195 32 28 chr12 94737837 94738700 -49047755 - L1MC2 LINE L1 -25 6319 5453 27 0 0 0 chr12 94740171 94740198 -49046257 + GC_rich Low_complexity Low_complexity 1 27 0 272 328 106 20 chr12 94740527 94740725 -49045730 - MIR SINE MIR -7 255 41 698 258 98 86 chr12 94740788 94741345 -49045110 - MER34B LTR ERV1 0 542 3 25 65 0 0 chr12 94742083 94742129 -49044326 + AT_rich Low_complexity Low_complexity 1 46 0 354 213 43 21 chr12 94742547 94742641 -49043814 - MLT2F LTR ERVL -531 132 37 376 231 128 0 chr12 94742888 94743005 -49043450 + L2 LINE L2 2136 2267 -1047 994 307 112 28 chr12 94743005 94743717 -49042738 + L2 LINE L2 2521 3313 0 1414 188 92 123 chr12 94745247 94745815 -49040640 + LTR49 LTR ERV1 1 550 -45 874 259 39 112 chr12 94745844 94746306 -49040149 + MLT1F1 LTR MaLR 9 436 -131 816 279 77 4 chr12 94746306 94746539 -49039916 - MLT1E1 LTR MaLR 0 654 405 562 226 26 32 chr12 94746553 94746758 -49039697 - MLT1E1 LTR MaLR -397 257 3 * 688 197 53 0 chr12 94746758 94746889 -49039566 + MLT1F1 LTR MaLR 430 567 0 27 62 0 0 chr12 94747284 94747332 -49039123 + AT_rich Low_complexity Low_complexity 1 48 0 38 39 0 0 chr12 94747700 94747752 -49038703 + AT_rich Low_complexity Low_complexity 1 52 0 325 308 23 70 chr12 94748389 94748561 -49037894 - MIR SINE MIR -50 212 49 180 0 0 0 chr12 94749145 94749165 -49037290 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 186 189 0 0 chr12 94749975 94750012 -49036443 + (TA)n Simple_repeat Simple_repeat 2 38 0 3812 195 32 28 chr12 94750037 94750900 -49035555 - L1MC2 LINE L1 -25 6319 5453 268 237 0 124 chr12 94751705 94751802 -49034653 - LTR16A LTR ERVL 0 450 366 1091 223 32 12 chr12 94751816 94752063 -49034392 + AluJo SINE Alu 39 290 -22 1037 319 19 6 chr12 94752085 94752405 -49034050 - LTR16A LTR ERVL -65 385 62 1339 331 60 51 chr12 94753026 94754054 -49032401 - ERVL LTR ERVL -887 4109 3430 248 239 14 14 chr12 94754132 94754203 -49032252 - MIR SINE MIR -118 144 74 240 317 37 0 chr12 94754349 94754431 -49032024 + L2 LINE L2 3182 3266 -6 22 0 0 0 chr12 94754584 94754606 -49031849 + AT_rich Low_complexity Low_complexity 1 22 0 2008 118 7 7 chr12 94754614 94754910 -49031545 + AluSx SINE Alu 1 296 -16 2386 74 3 0 chr12 94755924 94756233 -49030222 + AluY SINE Alu 1 310 -1 189 147 0 0 chr12 94756419 94756453 -49030002 + (TA)n Simple_repeat Simple_repeat 1 34 0 310 295 8 8 chr12 94756575 94756704 -49029751 - L1MC/D LINE L1 -1985 5823 5695 227 250 0 0 chr12 94756823 94756879 -49029576 - L1P4 LINE L1 -584 5579 5524 1360 195 32 38 chr12 94756914 94757338 -49029117 + MER21B LTR ERV1 2 478 -385 216 0 0 0 chr12 94757392 94757416 -49029039 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1705 209 63 0 chr12 94757416 94757765 -49028690 - MER21B LTR ERV1 -20 843 473 1009 247 14 5 chr12 94757772 94757995 -49028460 - Charlie1b DNA MER1_type -297 226 2 307 206 200 69 chr12 94758772 94758947 -49027508 - L1MC4a LINE L1 -1877 5931 5734 231 248 39 85 chr12 94758980 94759109 -49027346 - L1M2 LINE L1 -555 5736 5614 2199 241 22 71 chr12 94759143 94760014 -49026441 - L1ME3 LINE L1 -2763 3383 2556 518 256 13 0 chr12 94760014 94760170 -49026285 + L1ME3 LINE L1 3392 3549 -2597 3303 225 11 5 chr12 94760178 94760938 -49025517 + L1P LINE L1 4518 5281 -865 1499 147 24 12 chr12 94761775 94762026 -49024429 - AluSx SINE Alu -1 311 58 180 324 0 0 chr12 94762293 94762330 -49024125 + L2 LINE L2 3147 3183 -89 377 306 21 7 chr12 94762334 94762478 -49023977 - L1M4 LINE L1 -1949 4197 4052 1355 210 20 7 chr12 94762602 94762897 -49023558 + AluJo SINE Alu 1 299 -13 249 86 0 0 chr12 94763328 94763363 -49023092 + tRNA-Cys-TGC tRNA tRNA 1 35 -40 268 253 118 17 chr12 94763542 94763720 -49022735 + L1ME3 LINE L1 3867 4062 -2084 191 36 36 0 chr12 94763790 94763818 -49022637 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 23 0 0 0 chr12 94763845 94763868 -49022587 + AT_rich Low_complexity Low_complexity 1 23 0 1349 193 19 44 chr12 94764036 94764306 -49022149 + MLT2B1 LTR ERVL 1 263 -257 228 240 20 0 chr12 94764339 94764389 -49022066 + (TG)n Simple_repeat Simple_repeat 2 52 0 2534 52 0 0 chr12 94764426 94764732 -49021723 + AluY SINE Alu 1 306 -5 981 276 50 24 chr12 94764748 94765331 -49021124 + L1ME3 LINE L1 4416 5013 -1133 285 204 128 60 chr12 94765366 94765626 -49020829 + L1ME3 LINE L1 5673 5951 -211 1678 109 16 0 chr12 94765679 94765936 -49020519 + L1PA13 LINE L1 5887 6147 -16 501 17 0 0 chr12 94765938 94765996 -49020459 + (CA)n Simple_repeat Simple_repeat 1 58 0 1266 230 10 28 chr12 94766631 94766922 -49019533 - AluJo SINE Alu -26 286 1 717 272 127 87 chr12 94768826 94769893 -49016562 + L1ME1 LINE L1 98 1206 -4913 307 202 19 39 chr12 94769908 94770012 -49016443 + GA-rich Low_complexity Low_complexity 3 104 0 304 203 203 8 chr12 94770100 94770228 -49016227 + L1ME1 LINE L1 2189 2341 -3788 1517 221 53 56 chr12 94770491 94771042 -49015413 + L1ME1 LINE L1 5552 6100 -49 * 2950 120 14 24 chr12 94771030 94771522 -49014933 + L1MA3 LINE L1 5784 6270 -35 23 0 0 0 chr12 94771940 94771963 -49014492 + AT_rich Low_complexity Low_complexity 1 23 0 377 296 48 21 chr12 94772095 94772281 -49014174 + L1ME2 LINE L1 2918 3108 -3021 277 312 99 63 chr12 94772311 94772725 -49013730 + L1ME2 LINE L1 5453 5881 -266 24 53 0 0 chr12 94772970 94773008 -49013447 + AT_rich Low_complexity Low_complexity 1 38 0 253 320 10 21 chr12 94773008 94773202 -49013253 + L1ME LINE L1 5657 5848 -273 25 31 0 0 chr12 94773202 94773234 -49013221 + AT_rich Low_complexity Low_complexity 1 32 0 436 250 22 0 chr12 94773387 94773479 -49012976 + MER81 DNA DNA 21 114 0 213 212 136 15 chr12 94773687 94773753 -49012702 - MIR3 SINE MIR -11 197 124 893 231 43 5 chr12 94773769 94773977 -49012478 + MER20 DNA MER1_type 1 216 -3 210 71 0 0 chr12 94774573 94774601 -49011854 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 22 70 0 0 chr12 94775158 94775201 -49011254 + AT_rich Low_complexity Low_complexity 1 43 0 2159 180 37 12 chr12 94775907 94776153 -49010302 + MSTB LTR MaLR 9 270 -156 1981 142 7 26 chr12 94776153 94776462 -49009993 + AluSc SINE Alu 2 304 -5 2159 180 37 12 chr12 94776462 94776621 -49009834 + MSTB LTR MaLR 270 424 -2 189 352 42 0 chr12 94776814 94776885 -49009570 - MIR SINE MIR -118 144 71 1038 216 0 5 chr12 94777207 94777411 -49009044 - MER3 DNA MER1_type -2 207 5 1895 294 73 21 chr12 94777538 94778208 -49008247 + L1MB7 LINE L1 14 718 -6141 278 143 0 0 chr12 94778231 94778273 -49008182 + 5S rRNA rRNA 1 42 -79 1838 267 81 36 chr12 94778548 94779723 -49006732 + L1MB7 LINE L1 1205 2409 -4550 35 41 0 0 chr12 94779869 94779918 -49006537 + AT_rich Low_complexity Low_complexity 1 49 0 1489 244 114 19 chr12 94779951 94780802 -49005653 + L1MB7 LINE L1 2332 3258 -3699 2198 232 29 17 chr12 94780803 94781462 -49004993 + L1MB7 LINE L1 5494 6160 -797 879 223 61 4 chr12 94781507 94781754 -49004701 + L1MB7 LINE L1 6734 6994 -1 258 105 0 0 chr12 94782529 94782567 -49003888 + (T)n Simple_repeat Simple_repeat 1 38 0 270 333 31 0 chr12 94782601 94782763 -49003692 - HAL1 LINE L1 -983 1524 1358 1126 322 23 8 chr12 94782817 94783208 -49003247 + HERV16 LTR ERVL 1875 2271 -2725 280 421 0 7 chr12 94783267 94783407 -49003048 + HERV16 LTR ERVL 2384 2522 -2474 1904 165 74 3 chr12 94783407 94783758 -49002697 + MLT1B LTR MaLR 8 383 -7 1300 326 43 56 chr12 94783770 94784202 -49002253 + HERV16 LTR ERVL 2517 2953 -2043 2401 120 13 16 chr12 94784202 94784578 -49001877 - THE1C LTR MaLR 0 375 1 9498 126 43 21 chr12 94784580 94786123 -49000332 - THE1C-int LTR MaLR -2 1578 1 2527 109 13 19 chr12 94786125 94786500 -48999955 - THE1C LTR MaLR -2 373 1 1300 326 43 56 chr12 94786500 94786978 -48999477 + HERV16 LTR ERVL 2955 3317 -1679 998 316 164 11 chr12 94787045 94787746 -48998709 + HERV16 LTR ERVL 3764 4239 -757 486 351 56 29 chr12 94788637 94789047 -48997408 + LTR16B LTR ERVL 33 453 -11 2365 112 0 0 chr12 94789920 94790233 -48996222 - AluSq SINE Alu 0 313 1 1122 272 106 27 chr12 94791258 94791740 -48994715 + MLT2B1 LTR ERVL 1 520 0 266 0 29 0 chr12 94792343 94792377 -48994078 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 277 222 0 0 chr12 94793035 94793089 -48993366 - L1ME LINE L1 -451 5670 5617 39 0 0 0 chr12 94793494 94793533 -48992922 + AT_rich Low_complexity Low_complexity 1 39 0 318 299 88 54 chr12 94793550 94793754 -48992701 - L1ME LINE L1 -1368 4778 4568 1041 167 34 34 chr12 94795665 94795869 -48990586 + MER20 DNA MER1_type 6 209 -10 899 267 47 75 chr12 94796318 94796819 -48989636 + MER39 LTR ERV1 223 585 0 809 207 70 42 chr12 94797441 94797654 -48988801 + MER20 DNA MER1_type 1 219 0 362 225 45 22 chr12 94798648 94798737 -48987718 - MIR SINE MIR -120 142 52 2033 152 8 8 chr12 94799058 94799419 -48987036 + L1MA10 LINE L1 5973 6333 -1 610 231 31 67 chr12 94799446 94799671 -48986784 - Charlie7 DNA MER1_type -1891 721 505 339 257 73 0 chr12 94799746 94799855 -48986600 - Charlie7 DNA MER1_type -2367 245 129 239 412 10 0 chr12 94800651 94800748 -48985707 - L2 LINE L2 -8 3305 3208 3076 76 7 0 chr12 94801552 94801962 -48984493 - L1PA12 LINE L1 0 6168 5756 2917 114 16 10 chr12 94801962 94802456 -48983999 + L1P4 LINE L1 5199 5697 -471 21 57 0 0 chr12 94802637 94802672 -48983783 + AT_rich Low_complexity Low_complexity 1 35 0 488 93 0 27 chr12 94804151 94804226 -48982229 - L1PA11 LINE L1 -16 6158 6086 250 313 89 27 chr12 94805601 94805713 -48980742 - L3 LINE CR1 -890 687 569 2050 69 0 0 chr12 94807121 94807389 -48979066 - AluY SINE Alu 0 305 38 415 222 80 23 chr12 94807391 94807567 -48978888 + Charlie7 DNA MER1_type 2427 2612 0 2172 107 40 0 chr12 94808092 94808391 -48978064 + AluSx SINE Alu 1 311 -1 1813 164 7 7 chr12 94808404 94808703 -48977752 + AluJb SINE Alu 1 299 -13 555 301 13 40 chr12 94808740 94808966 -48977489 + Charlie8 DNA MER1_type 1 220 -2197 322 254 31 100 chr12 94809164 94809294 -48977161 - L2 LINE L2 -32 3281 3161 467 324 47 39 chr12 94809309 94809565 -48976890 - MIR SINE MIR 0 262 5 462 312 72 49 chr12 94809574 94809984 -48976471 - L2 LINE L2 -196 3117 2698 473 202 56 20 chr12 94810125 94810291 -48976164 + MER63 DNA MER1_type 35 1682 -6 528 342 45 22 chr12 94810379 94810601 -48975854 + MIR SINE MIR 5 231 -31 25 0 0 0 chr12 94811266 94811291 -48975164 + AT_rich Low_complexity Low_complexity 1 25 0 831 169 0 0 chr12 94811767 94811891 -48974564 + FLAM_C SINE Alu 1 124 -19 22 0 0 0 chr12 94811891 94811913 -48974542 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 94812365 94812388 -48974067 + AT_rich Low_complexity Low_complexity 1 23 0 314 283 107 57 chr12 94814735 94814979 -48971476 + L2 LINE L2 3049 3304 -9 266 353 72 7 chr12 94815068 94815207 -48971248 - L2 LINE L2 0 3313 3166 33 56 0 0 chr12 94815577 94815631 -48970824 + AT_rich Low_complexity Low_complexity 1 54 0 207 250 0 0 chr12 94816474 94816514 -48969941 + polypurine Low_complexity Low_complexity 3 42 0 205 411 20 14 chr12 94816537 94816683 -48969772 + MIR SINE MIR 35 181 -81 248 241 19 0 chr12 94818008 94818062 -48968393 - L2 LINE L2 0 3272 3218 1262 307 91 22 chr12 94818125 94818750 -48967705 - L2 LINE L2 -779 2535 1868 442 216 0 34 chr12 94818855 94818943 -48967512 + L2 LINE L2 3184 3268 -4 698 249 167 48 chr12 94819210 94819375 -48967080 + MLT1G LTR MaLR 10 154 -436 288 0 0 0 chr12 94819375 94819407 -48967048 + (TC)n Simple_repeat Simple_repeat 1 32 0 698 249 167 48 chr12 94819407 94819571 -48966884 + MLT1G LTR MaLR 154 378 -212 478 322 69 0 chr12 94822227 94822472 -48963983 - MIR SINE MIR 0 262 1 189 239 246 28 chr12 94824478 94824620 -48961835 - L2 LINE L2 -4 3309 3137 2451 71 7 3 chr12 94825268 94825577 -48960878 - AluY SINE Alu -1 310 1 6058 47 15 0 chr12 94826117 94826865 -48959590 - L1PA5 LINE L1 -81 6073 5315 586 53 0 0 chr12 94826865 94826939 -48959516 + L1PA5 LINE L1 6071 6145 -9 504 284 90 28 chr12 94827153 94827364 -48959091 - MIR SINE MIR -34 228 5 230 183 17 0 chr12 94828651 94828711 -48957744 + (TAA)n Simple_repeat Simple_repeat 1 61 0 497 256 45 45 chr12 94828950 94829126 -48957329 - LTR16A LTR ERVL -6 444 269 226 321 37 56 chr12 94829155 94829317 -48957138 - LTR16A1 LTR ERVL -266 191 33 2088 118 63 26 chr12 94829455 94829804 -48956651 - THE1B LTR MaLR -2 362 1 214 382 83 14 chr12 94830018 94830162 -48956293 - L2 LINE L2 -17 3255 3102 1048 196 65 39 chr12 94830260 94830382 -48956073 - MER74C LTR ERVL -139 419 302 2323 81 3 10 chr12 94830382 94830690 -48955765 - AluY SINE Alu -5 306 1 1048 196 65 39 chr12 94830690 94830746 -48955709 - MER74C LTR ERVL -256 302 249 2428 223 7 45 chr12 94830746 94831320 -48955135 - MLT2B3 LTR ERVL 0 554 3 1048 196 65 39 chr12 94831320 94831480 -48954975 - MER74C LTR ERVL -309 249 4 949 210 0 58 chr12 94831974 94832179 -48954276 + AluJo SINE Alu 1 193 -119 2456 165 101 15 chr12 94832179 94832644 -48953811 - MER61D LTR ERV1 0 501 3 548 194 0 0 chr12 94832644 94832737 -48953718 + AluJo SINE Alu 188 280 -32 822 130 0 0 chr12 94832749 94832880 -48953575 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 2423 275 45 15 chr12 94833604 94834335 -48952120 + Charlie7 DNA MER1_type 1486 2249 -363 2507 40 3 3 chr12 94834335 94834635 -48951820 + AluY SINE Alu 1 300 -11 2423 275 45 15 chr12 94834635 94834777 -48951678 + Charlie7 DNA MER1_type 2249 2385 -227 677 210 14 7 chr12 94834925 94835063 -48951392 + MER8 DNA MER2_type 100 238 -1 300 27 0 0 chr12 94835063 94835100 -48951355 + (CA)n Simple_repeat Simple_repeat 2 38 0 788 259 19 23 chr12 94835172 94835388 -48951067 - MER20 DNA MER1_type -2 217 3 342 267 55 59 chr12 94835961 94836234 -48950221 + L1ME4a LINE L1 5846 6117 -4 1080 261 65 22 chr12 94837938 94838306 -48948149 - MLT2C1 LTR ERVL 0 397 14 205 327 99 0 chr12 94838555 94838656 -48947799 + MIR SINE MIR 42 152 -56 2213 208 6 42 chr12 94838785 94839305 -48947150 + MLT1D LTR MaLR 5 505 0 1141 307 85 25 chr12 94839331 94839813 -48946642 + MLT1J LTR MaLR 1 511 0 3076 189 20 18 chr12 94840416 94840930 -48945525 + MLT2B3 LTR ERVL 1 518 -36 728 68 10 0 chr12 94840930 94841033 -48945422 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 3076 189 20 18 chr12 94841033 94841064 -48945391 + MLT2B3 LTR ERVL 518 547 -7 306 329 14 21 chr12 94841981 94842121 -48944334 - LTR16A LTR ERVL -294 156 18 1386 226 107 24 chr12 94842814 94843274 -48943181 - L1MA9 LINE L1 -38 6274 5777 201 71 0 106 chr12 94843357 94843470 -48942985 + (TA)n Simple_repeat Simple_repeat 1 101 0 490 91 0 86 chr12 94843486 94843683 -48942772 + (TA)n Simple_repeat Simple_repeat 1 180 0 411 118 30 59 chr12 94843733 94843902 -48942553 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 286 190 0 51 chr12 94843911 94843990 -48942465 + (TA)n Simple_repeat Simple_repeat 2 76 0 600 207 136 0 chr12 94844012 94844152 -48942303 - L1M2 LINE L1 -499 5813 5655 505 234 42 117 chr12 94844151 94844395 -48942060 - L1M4 LINE L1 -3199 2947 2762 * 17929 34 2 5 chr12 94844395 94847373 -48939082 + L1PA4 LINE L1 3176 6165 0 505 234 42 117 chr12 94847373 94847656 -48938799 - L1M4 LINE L1 -3384 2762 2459 219 225 0 84 chr12 94847704 94847775 -48938680 + L2 LINE L2 3184 3248 -65 842 216 58 41 chr12 94847888 94848179 -48938276 + L1MA9 LINE L1 5979 6274 -38 28 0 0 0 chr12 94848179 94848207 -48938248 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 34 28 chr12 94848207 94848530 -48937925 + ERVL LTR ERVL 4807 5131 -633 1196 223 84 46 chr12 94848757 94849210 -48937245 - MER34-int LTR ERV1 -2768 2168 1699 347 155 74 14 chr12 94849210 94849292 -48937163 + (TA)n Simple_repeat Simple_repeat 2 78 -80 2484 62 0 0 chr12 94849292 94849582 -48936873 + AluY SINE Alu 1 290 -21 347 155 74 14 chr12 94849582 94849647 -48936808 + (TA)n Simple_repeat Simple_repeat 78 158 0 24 32 0 0 chr12 94849652 94849683 -48936772 + AT_rich Low_complexity Low_complexity 1 31 0 291 181 32 21 chr12 94849703 94849797 -48936658 + (TA)n Simple_repeat Simple_repeat 1 95 0 1700 159 24 12 chr12 94849799 94849829 -48936626 + ERVL LTR ERVL 5427 5455 -309 2333 181 49 91 chr12 94849829 94850586 -48935869 - LTR8A LTR ERV1 -2 725 1 1700 159 24 12 chr12 94850586 94850888 -48935567 + ERVL LTR ERVL 5455 5763 -1 900 165 74 6 chr12 94850733 94850909 -48935546 + Ricksha DNA DNA 185 372 -1674 * 2319 222 86 18 chr12 94850914 94851539 -48934916 - MER34-int LTR ERV1 -3641 1295 628 328 237 15 92 chr12 94851638 94851769 -48934686 - MER34-int LTR ERV1 -4542 394 274 255 196 0 0 chr12 94851834 94851880 -48934575 - MER34-int LTR ERV1 -5413 918 873 425 304 23 23 chr12 94852309 94852480 -48933975 - MER34-int LTR ERV1 -6156 645 475 408 296 41 36 chr12 94852667 94852887 -48933568 - MER34-int LTR ERV1 -6110 221 1 1548 138 0 0 chr12 94853401 94853626 -48932829 + AluSg/x SINE Alu 79 303 -9 543 35 35 12 chr12 94854288 94854374 -48932081 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 254 290 14 14 chr12 94854718 94854787 -48931668 - L2 LINE L2 0 3272 3204 229 350 21 21 chr12 94855770 94855867 -48930588 - L2 LINE L2 -298 2974 2878 315 341 59 0 chr12 94855917 94856052 -48930403 + MER117 DNA MER1_type 49 191 -6 1397 178 0 30 chr12 94856245 94856347 -48930108 + AluJo SINE Alu 43 146 -166 1890 143 49 35 chr12 94856347 94856717 -48929738 - THE1C LTR MaLR 0 375 1 1397 178 0 30 chr12 94856717 94856884 -48929571 + AluJo SINE Alu 146 304 -8 616 288 110 37 chr12 94856884 94857183 -48929272 - MER34 LTR ERV1 -77 465 145 1242 128 0 0 chr12 94857242 94857421 -48929034 - THE1C LTR MaLR -196 179 1 8887 115 108 10 chr12 94857421 94858860 -48927595 - THE1C-int LTR MaLR 0 1580 1 1927 182 27 8 chr12 94858860 94859228 -48927227 - THE1C LTR MaLR 0 375 1 631 230 42 59 chr12 94859228 94859512 -48926943 - MER34-int LTR ERV1 -157 4779 4571 291 235 0 47 chr12 94859543 94859628 -48926827 + MER31-int LTR ERV1 2621 2701 -2235 6929 204 73 72 chr12 94859776 94862200 -48924255 - MER34-int LTR ERV1 -823 4113 1686 319 249 71 61 chr12 94862216 94862413 -48924042 - LTR57-int LTR ERVL -3832 1511 1313 296 175 32 0 chr12 94862616 94862679 -48923776 - MER34-int LTR ERV1 -7039 1081 1017 1242 180 8 80 chr12 94862762 94863117 -48923338 - LTR49-int LTR ERV1 -4398 538 301 237 254 36 0 chr12 94863119 94863174 -48923281 - MER67B LTR ERV1 -462 199 143 323 191 19 67 chr12 94863240 94863345 -48923110 - LTR49-int LTR ERV1 -4860 1471 1372 388 206 235 0 chr12 94863432 94863534 -48922921 - LTR49-int LTR ERV1 -6156 645 520 281 132 38 0 chr12 94863545 94863598 -48922857 - LTR49-int LTR ERV1 -4955 1376 1322 760 266 144 35 chr12 94863865 94864241 -48922214 - MER34 LTR ERV1 0 542 126 1477 203 21 14 chr12 94864717 94865007 -48921448 + AluJb SINE Alu 12 303 -9 2726 158 13 57 chr12 94865495 94866038 -48920417 - MLT2B1 LTR ERVL 0 520 2 339 313 74 18 chr12 94866128 94866291 -48920164 + MIR SINE MIR 69 240 -22 208 288 22 58 chr12 94868301 94868440 -48918015 + L2 LINE L2 3165 3298 -15 219 312 55 28 chr12 94868902 94869011 -48917444 - L2 LINE L2 -3 3310 3199 2045 200 26 13 chr12 94869105 94869565 -48916890 - MER31B LTR ERV1 0 466 1 270 226 35 0 chr12 94869714 94869787 -48916668 + MIR SINE MIR 72 146 -62 236 170 19 38 chr12 94870121 94870174 -48916281 + L2 LINE L2 3262 3313 0 191 390 30 30 chr12 94871028 94871128 -48915327 + L2 LINE L2 3020 3119 -153 2691 151 7 11 chr12 94871567 94872016 -48914439 - L1MB1 LINE L1 -310 5879 5433 1535 160 26 36 chr12 94872016 94872316 -48914139 + L1MB1 LINE L1 5865 6168 0 22 88 0 0 chr12 94875183 94875240 -48911215 + AT_rich Low_complexity Low_complexity 1 57 0 2247 202 57 26 chr12 94875255 94875711 -48910744 - MLT2B1 LTR ERVL -50 470 1 181 302 35 23 chr12 94876764 94876850 -48909605 - MIR SINE MIR -128 134 48 2506 119 5 19 chr12 94876900 94877269 -48909186 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr12 94877706 94877729 -48908726 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 94877851 94877886 -48908569 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr12 94878386 94878429 -48908026 + AT_rich Low_complexity Low_complexity 1 43 0 561 200 26 0 chr12 94878797 94878912 -48907543 - L2 LINE L2 0 3313 3196 1506 291 173 41 chr12 94878965 94879232 -48907223 + HAL1 LINE L1 283 513 -1994 1117 206 63 77 chr12 94879232 94879610 -48906845 + MLT1A2 LTR MaLR 2 374 0 1506 291 173 41 chr12 94879610 94880173 -48906282 + HAL1 LINE L1 513 1000 -1507 186 103 0 0 chr12 94880173 94880202 -48906253 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1506 291 173 41 chr12 94880202 94880621 -48905834 + HAL1 LINE L1 1000 1362 -1145 1149 306 42 54 chr12 94880621 94881290 -48905165 - MLT2F LTR ERVL 0 663 3 1506 291 173 41 chr12 94881290 94881526 -48904929 + HAL1 LINE L1 1362 1966 -541 406 281 24 6 chr12 94881551 94881718 -48904737 + HAL1 LINE L1 2047 2216 -291 4331 211 96 19 chr12 94881786 94883897 -48902558 - L1MC2 LINE L1 -12 6332 4053 258 272 37 42 chr12 94883903 94884120 -48902335 + HAL1 LINE L1 2265 2480 -27 200 205 24 24 chr12 94884134 94884217 -48902238 + (TAA)n Simple_repeat Simple_repeat 1 83 0 904 242 107 0 chr12 94885222 94885437 -48901018 - MLT1E LTR MaLR -8 585 348 823 280 21 33 chr12 94885455 94885698 -48900757 - MLT1E LTR MaLR -353 240 1 1598 194 17 0 chr12 94885903 94886065 -48900390 - AluJo SINE Alu -13 299 128 378 0 0 0 chr12 94886065 94886107 -48900348 + (TA)n Simple_repeat Simple_repeat 2 43 0 1598 194 17 0 chr12 94886107 94886238 -48900217 - AluJo SINE Alu -184 128 1 583 292 67 46 chr12 94886287 94886918 -48899537 + L1ME3A LINE L1 614 1257 -4862 588 283 86 9 chr12 94887272 94887744 -48898711 + L1ME3A LINE L1 4914 5422 -723 510 293 144 35 chr12 94887745 94888121 -48898334 + L1ME3A LINE L1 5517 5933 -220 198 347 74 2 chr12 94888180 94888385 -48898070 - MIR SINE MIR -2 260 3 396 311 42 18 chr12 94888734 94888901 -48897554 - MIR SINE MIR -40 222 52 286 202 21 26 chr12 94889332 94889429 -48897026 + MLT1I LTR MaLR 91 154 -255 240 247 118 0 chr12 94889593 94889686 -48896769 + MLT1I LTR MaLR 281 384 -25 714 202 0 0 chr12 94890788 94890907 -48895548 - FLAM_C SINE Alu -24 119 1 379 291 74 20 chr12 94891031 94891275 -48895180 + L1ME4a LINE L1 5104 5360 -786 721 150 15 30 chr12 94891283 94891536 -48894919 + FLAM_C SINE Alu 1 251 0 947 173 0 0 chr12 94891542 94891698 -48894757 + FRAM SINE Alu 1 151 -25 261 265 68 26 chr12 94892093 94892210 -48894245 + L1ME4a LINE L1 5951 6072 -49 183 152 0 65 chr12 94893280 94893326 -48893129 + L2 LINE L2 1588 1630 -1684 1236 231 54 38 chr12 94893761 94894133 -48892322 + MLT1C LTR MaLR 1 378 -89 506 229 99 26 chr12 94895407 94895599 -48890856 - MLT1J1 LTR MaLR -2 444 239 35 63 0 0 chr12 94895749 94895812 -48890643 + AT_rich Low_complexity Low_complexity 1 63 0 724 127 30 26 chr12 94896125 94896392 -48890063 + GA-rich Low_complexity Low_complexity 1 268 0 214 305 105 19 chr12 94898149 94898254 -48888201 + L2 LINE L2 3149 3262 -10 527 254 176 12 chr12 94898276 94898441 -48888014 + MLT1D LTR MaLR 1 192 -313 2090 121 52 30 chr12 94898510 94898875 -48887580 + THE1C LTR MaLR 3 375 0 1467 191 35 65 chr12 94898974 94899376 -48887079 - MLT1B LTR MaLR 0 390 1 23 0 0 0 chr12 94899913 94899936 -48886519 + AT_rich Low_complexity Low_complexity 1 23 0 220 313 223 42 chr12 94901366 94901559 -48884896 - MIR SINE MIR -18 244 19 227 346 40 10 chr12 94901708 94901809 -48884646 - L2 LINE L2 -995 2319 2216 422 281 70 12 chr12 94901955 94902126 -48884329 - LTR50 LTR ERVL -111 684 504 1305 264 13 6 chr12 94902130 94902444 -48884011 - MER77 LTR ERV1 -2 603 288 790 189 26 130 chr12 94902547 94902854 -48883601 + MLT1-int LTR MaLR 613 887 -484 252 229 265 0 chr12 94903019 94903102 -48883353 - LTR50 LTR ERVL -289 506 402 2512 242 59 5 chr12 94903130 94903693 -48882762 - MLT1E3 LTR MaLR 0 624 32 705 227 72 10 chr12 94903695 94903889 -48882566 - LTR50 LTR ERVL -583 212 7 1930 178 89 5 chr12 94904032 94904425 -48882030 + MSTA LTR MaLR 3 428 0 8881 148 19 34 chr12 94904427 94906029 -48880426 + MSTA-int LTR MaLR 3 1580 0 2059 135 82 56 chr12 94906029 94906443 -48880012 + MSTA LTR MaLR 1 425 -3 767 314 118 39 chr12 94907520 94907902 -48878553 + L2 LINE L2 2893 3304 -9 325 323 66 12 chr12 94907999 94908166 -48878289 - MIR SINE MIR -5 257 82 396 349 40 7 chr12 94908438 94908587 -48877868 - MER91A DNA MER1_type -24 172 19 470 303 121 29 chr12 94908596 94908910 -48877545 + L2 LINE L2 2835 3177 -136 293 168 69 0 chr12 94910718 94910819 -48875636 + (TA)n Simple_repeat Simple_repeat 1 108 0 586 316 84 29 chr12 94910834 94911251 -48875204 - MLT1J LTR MaLR -35 476 37 190 194 32 0 chr12 94911304 94911366 -48875089 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 231 114 0 0 chr12 94911386 94911421 -48875034 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 94911502 94911523 -48874932 + AT_rich Low_complexity Low_complexity 1 21 0 7840 168 4 21 chr12 94911996 94914312 -48872143 - L1P3 LINE L1 -4140 2321 2 1233 201 81 49 chr12 94914932 94915340 -48871115 + MER76 LTR ERV 1 443 -245 707 290 83 27 chr12 94915512 94915897 -48870558 - L2 LINE L2 -229 3084 2678 1556 211 83 0 chr12 94916816 94917153 -48869302 - MLT1A1 LTR MaLR 0 365 1 1656 164 63 13 chr12 94917459 94917838 -48868617 + L1MC3 LINE L1 7368 7765 -20 22 0 0 0 chr12 94917927 94917949 -48868506 + AT_rich Low_complexity Low_complexity 1 22 0 541 265 66 33 chr12 94918325 94918506 -48867949 + MIR SINE MIR 64 250 -12 1334 189 52 62 chr12 94918509 94918895 -48867560 - MER39 LTR ERV1 -1 706 325 4417 143 8 14 chr12 94918898 94919058 -48867397 - MER50 LTR ERV1 -23 711 552 4893 70 77 0 chr12 94919058 94919697 -48866758 - LTR12 LTR ERV1 0 688 1 4417 143 8 14 chr12 94919697 94920251 -48866204 - MER50 LTR ERV1 -182 552 1 324 212 242 10 chr12 94920256 94920355 -48866100 - MER34 LTR ERV1 -420 122 1 2474 147 71 2 chr12 94920698 94921121 -48865334 + LTR47A LTR ERVL 1 452 0 219 237 142 95 chr12 94921307 94921518 -48864937 - MIR SINE MIR -10 252 32 260 303 53 0 chr12 94921546 94921622 -48864833 - L2 LINE L2 -56 3216 3137 384 272 257 10 chr12 94921883 94922085 -48864370 + MIR SINE MIR 1 252 -10 196 93 163 0 chr12 94922101 94922144 -48864311 + L2 LINE L2 3208 3257 -15 24 67 0 0 chr12 94922850 94922895 -48863560 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr12 94924308 94924334 -48862121 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1784 266 98 57 chr12 94924505 94925490 -48860965 + L1ME LINE L1 26 1061 -5022 585 242 72 5 chr12 94925483 94925706 -48860749 + L1ME LINE L1 2080 2317 -3763 * 7716 235 44 28 chr12 94925712 94929516 -48856939 + L1MA4A LINE L1 71 5057 -2151 3551 158 39 39 chr12 94929639 94930248 -48856207 + L1MA4A LINE L1 5845 6476 -889 2139 161 56 12 chr12 94930248 94930658 -48855797 + MSTA LTR MaLR 1 428 0 3551 158 39 39 chr12 94930658 94931159 -48855296 + L1MA4A LINE L1 6476 6976 -389 495 179 0 12 chr12 94931164 94931248 -48855207 + MLT1C LTR MaLR 382 464 -3 515 147 10 49 chr12 94931260 94931362 -48855093 + MLT1F1 LTR MaLR 470 567 0 2088 138 44 5 chr12 94931528 94931911 -48854544 - L1MA5 LINE L1 -2 6298 5901 22 88 0 0 chr12 94932012 94932069 -48854386 + AT_rich Low_complexity Low_complexity 1 57 0 484 315 54 46 chr12 94982709 94982950 -48803505 - MLT1L LTR MaLR -299 316 74 284 274 27 0 chr12 94983705 94983778 -48802677 + MIR3 SINE MIR 129 203 -5 2023 67 25 79 chr12 94984134 94984450 -48802005 + AluY SINE Alu 1 299 -12 225 333 82 59 chr12 94985318 94985453 -48801002 + MIR3 SINE MIR 5 142 -66 34 55 0 0 chr12 94985739 94985794 -48800661 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr12 94985903 94985931 -48800524 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 94986763 94986785 -48799670 + AT_rich Low_complexity Low_complexity 1 22 0 1601 193 0 14 chr12 94987104 94987399 -48799056 + AluJb SINE Alu 1 291 -21 438 20 0 0 chr12 94987402 94987453 -48799002 + (TA)n Simple_repeat Simple_repeat 2 52 0 2291 57 0 0 chr12 94989203 94989516 -48796939 + AluY SINE Alu 1 313 0 2401 96 3 3 chr12 94989829 94990174 -48796281 - L1PB1 LINE L1 0 6151 5807 239 119 0 0 chr12 94990250 94990292 -48796163 - LTR66 LTR ERVL -171 439 398 904 139 0 28 chr12 94990297 94990441 -48796014 - AluSq/x SINE Alu -173 140 1 1924 212 10 34 chr12 94990443 94990939 -48795516 - L1 LINE L1 -2249 3897 3414 1081 266 150 35 chr12 94991010 94991603 -48794852 + MLT1E1 LTR MaLR 1 654 0 310 292 131 0 chr12 94992168 94992305 -48794150 + MIR SINE MIR 92 246 -16 310 346 94 6 chr12 94992393 94992552 -48793903 - MIR SINE MIR -72 190 18 7481 247 59 32 chr12 94992601 94994938 -48791517 - L1M4 LINE L1 -891 5255 2831 1240 186 42 7 chr12 94994938 94995223 -48791232 - L1MA4 LINE L1 -11 6289 5995 7481 247 59 32 chr12 94995223 94995685 -48790770 - L1M4 LINE L1 -3315 2831 2383 1449 194 6 63 chr12 94996041 94996376 -48790079 - MLT1A1 LTR MaLR -49 316 1 409 333 39 20 chr12 94996393 94996546 -48789909 - LTR40a LTR ERVL -185 334 179 198 156 0 0 chr12 94996562 94996607 -48789848 + T-rich Low_complexity Low_complexity 1 45 0 5189 143 3 20 chr12 94996679 94997728 -48788727 - L1PA16 LINE L1 -8 6158 5105 526 172 98 16 chr12 94997728 94997850 -48788605 - LTR40a LTR ERVL -386 133 2 1044 322 130 26 chr12 94997958 94998795 -48787660 - L2 LINE L2 -69 3244 2311 2108 108 0 0 chr12 94998990 94999303 -48787152 + AluSc SINE Alu 4 316 0 315 412 55 16 chr12 94999831 95000086 -48786369 - L2 LINE L2 -54 3218 2954 280 324 132 57 chr12 95000099 95000417 -48786038 + L2 LINE L2 2959 3300 -13 258 235 35 47 chr12 95001247 95001332 -48785123 - MIR3 SINE MIR -8 200 117 21 82 0 0 chr12 95001630 95001679 -48784776 + AT_rich Low_complexity Low_complexity 1 49 0 23 68 0 0 chr12 95002755 95002799 -48783656 + AT_rich Low_complexity Low_complexity 1 44 0 1741 163 74 14 chr12 95003553 95003903 -48782552 - THE1C LTR MaLR 0 375 5 9562 142 28 8 chr12 95003907 95005455 -48781000 - THE1C-int LTR MaLR 0 1580 1 1556 176 60 46 chr12 95005455 95005825 -48780630 - THE1C LTR MaLR 0 375 1 416 313 48 29 chr12 95006762 95006970 -48779485 - L1ME LINE L1 -396 5774 5563 2048 153 31 31 chr12 95007062 95007479 -48778976 - L1MA3 LINE L1 -1 7723 7307 1209 185 0 5 chr12 95007479 95007684 -48778771 - AluJb SINE Alu -102 210 7 19690 174 56 12 chr12 95007690 95008358 -48778097 - L1MA3 LINE L1 -477 7247 6610 1584 130 126 4 chr12 95008358 95008657 -48777798 - AluSx SINE Alu 0 331 1 19690 174 56 12 chr12 95008657 95014816 -48771639 - L1MA3 LINE L1 -1114 6610 88 261 0 0 0 chr12 95014816 95014845 -48771610 + (TG)n Simple_repeat Simple_repeat 2 30 0 19690 174 56 12 chr12 95014845 95014929 -48771526 - L1MA3 LINE L1 -7636 88 9 241 305 36 18 chr12 95014922 95015089 -48771366 - L1ME LINE L1 -707 5455 5286 * 6299 191 24 28 chr12 95015399 95017009 -48769446 + L1M2 LINE L1 3899 5506 -680 2962 158 15 35 chr12 95017009 95017183 -48769272 + L1PB4 LINE L1 5569 5745 -411 1787 126 53 7 chr12 95017183 95017468 -48768987 + AluSx SINE Alu 6 303 -9 2962 158 15 35 chr12 95017468 95017893 -48768562 + L1PB4 LINE L1 5745 6156 0 6299 191 24 28 chr12 95017893 95017937 -48768518 + L1M2 LINE L1 5506 5549 -637 306 374 40 18 chr12 95018065 95018292 -48768163 - L1MEc LINE L1 -4241 2155 1924 317 255 92 92 chr12 95018736 95019018 -48767437 + L1ME4a LINE L1 5760 6041 -80 657 186 0 0 chr12 95019032 95019150 -48767305 + L1 LINE L1 4745 4862 -1284 222 37 0 0 chr12 95019647 95019674 -48766781 + (T)n Simple_repeat Simple_repeat 1 27 0 330 312 56 48 chr12 95020094 95020555 -48765900 - L1M4 LINE L1 -2431 3715 3251 585 291 111 13 chr12 95020692 95021080 -48765375 - L1M4 LINE L1 -3243 2903 2478 37 0 0 0 chr12 95021080 95021117 -48765338 + AT_rich Low_complexity Low_complexity 1 37 0 415 315 116 17 chr12 95021144 95021385 -48765070 - L1M4 LINE L1 -3689 2457 2193 22 35 0 0 chr12 95022511 95022540 -48763915 + AT_rich Low_complexity Low_complexity 1 29 0 312 346 133 14 chr12 95022621 95022832 -48763623 + MIR SINE MIR 15 250 -12 225 318 0 0 chr12 95023919 95023985 -48762470 + L3 LINE CR1 1507 1572 -5 477 276 103 39 chr12 95024261 95024430 -48762025 + MLT1I LTR MaLR 194 380 -29 2181 112 74 0 chr12 95024430 95024769 -48761686 - THE1B LTR MaLR 0 364 1 477 276 103 39 chr12 95024769 95024802 -48761653 + MLT1I LTR MaLR 380 409 0 578 264 21 74 chr12 95026056 95026298 -48760157 + MIR SINE MIR 1 229 -33 2187 112 16 3 chr12 95027888 95028192 -48758263 + AluSx SINE Alu 1 308 -4 284 380 27 16 chr12 95028627 95028814 -48757641 - MER5A DNA MER1_type 0 189 1 268 317 145 0 chr12 95028853 95028998 -48757457 + MIR SINE MIR 65 230 -32 894 275 42 28 chr12 95029001 95029285 -48757170 + MLT1J2 LTR MaLR 1 288 -162 24 32 0 0 chr12 95029961 95029992 -48756463 + AT_rich Low_complexity Low_complexity 1 31 0 307 291 60 17 chr12 95030272 95030389 -48756066 + MER117 DNA MER1_type 19 140 -57 1559 85 112 54 chr12 95030623 95030883 -48755572 + AluY SINE Alu 35 309 -2 41 66 0 0 chr12 95032422 95032498 -48753957 + AT_rich Low_complexity Low_complexity 1 76 0 25 0 0 0 chr12 95032895 95032920 -48753535 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr12 95033093 95033135 -48753320 + AT_rich Low_complexity Low_complexity 1 42 0 264 139 0 0 chr12 95033967 95034010 -48752445 - L1MC5 LINE L1 -178 7783 7741 303 179 75 0 chr12 95034248 95034315 -48752140 - L1MCa LINE L1 -4360 2066 1995 300 321 0 0 chr12 95034250 95034334 -48752121 + L1MC4 LINE L1 6615 6698 -1344 * 339 272 0 22 chr12 95034333 95034425 -48752030 - L1MC4 LINE L1 -1339 6703 6614 2085 127 0 0 chr12 95034430 95034714 -48751741 - AluSc SINE Alu -20 289 6 293 299 67 15 chr12 95035008 95035142 -48751313 + MIR3 SINE MIR 32 172 -36 208 209 15 15 chr12 95035709 95035776 -48750679 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 348 24 0 0 chr12 95036388 95036429 -48750026 + (CA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr12 95036845 95036868 -48749587 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 95037155 95037187 -48749268 + AT_rich Low_complexity Low_complexity 1 32 0 603 102 0 0 chr12 95037272 95037360 -48749095 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 1766 154 165 8 chr12 95037556 95037925 -48748530 - MSTA LTR MaLR -1 427 1 1992 145 21 43 chr12 95038081 95038454 -48748001 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr12 95039209 95039231 -48747224 + (CA)n Simple_repeat Simple_repeat 1 22 0 409 211 84 42 chr12 95039363 95039505 -48746950 - MER113 DNA MER1_type? -187 334 187 2115 129 3 0 chr12 95039545 95039854 -48746601 + AluSx SINE Alu 1 310 -2 1876 112 23 0 chr12 95039865 95040123 -48746332 + AluSg SINE Alu 32 295 -15 23 0 0 0 chr12 95041232 95041255 -48745200 + AT_rich Low_complexity Low_complexity 1 23 0 1531 98 0 5 chr12 95042315 95042530 -48743925 + THE1B-int LTR MaLR 1367 1580 0 1871 147 47 39 chr12 95042530 95042891 -48743564 + THE1B LTR MaLR 1 364 0 227 321 0 0 chr12 95042915 95042971 -48743484 - L2 LINE L2 -6 3266 3211 219 284 9 95 chr12 95043194 95043310 -48743145 - MER5A DNA MER1_type -37 152 47 215 152 22 0 chr12 95043475 95043521 -48742934 + T-rich Low_complexity Low_complexity 4 50 0 188 204 61 0 chr12 95043573 95043622 -48742833 + L2 LINE L2 3221 3272 0 333 0 0 0 chr12 95043660 95043697 -48742758 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1465 24 0 0 chr12 95043697 95043866 -48742589 - L1PA5 LINE L1 -18 6136 5968 258 223 71 18 chr12 95044139 95044251 -48742204 + L1ME LINE L1 5197 5314 -832 802 176 8 0 chr12 95044327 95044458 -48741997 + FLAM_C SINE Alu 1 132 -1 442 316 79 13 chr12 95044518 95044816 -48741639 + L1ME LINE L1 5470 5726 -395 24 77 0 0 chr12 95045466 95045518 -48740937 + AT_rich Low_complexity Low_complexity 1 52 0 577 296 22 64 chr12 95045547 95045814 -48740641 + MLT1H LTR MaLR 88 343 -206 1875 168 42 32 chr12 95046640 95047191 -48739264 - MLT2A2 LTR ERVL 0 554 1 497 306 115 17 chr12 95047475 95047936 -48738519 + MLT1H LTR MaLR 5 404 -5 1299 208 46 58 chr12 95048141 95048536 -48737919 + MLT1B LTR MaLR 1 390 0 250 179 71 18 chr12 95048898 95048954 -48737501 + MER5A DNA MER1_type 130 188 -1 3310 256 18 45 chr12 95049313 95050214 -48736241 - L1M4b LINE L1 -5973 886 11 1744 242 12 7 chr12 95050216 95050634 -48735821 - L1ME LINE L1 -431 5735 5316 2006 128 13 3 chr12 95050641 95050939 -48735516 - AluSx SINE Alu -11 301 1 239 0 0 31 chr12 95050945 95050977 -48735478 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 95051213 95051235 -48735220 + AT_rich Low_complexity Low_complexity 1 22 0 362 299 78 64 chr12 95052439 95052643 -48733812 - MLT1K LTR MaLR -359 229 23 231 332 62 67 chr12 95052819 95053027 -48733428 - MLT1I LTR MaLR -105 304 98 6729 94 0 0 chr12 95053370 95054313 -48732142 + L1PA12 LINE L1 2995 3942 -3642 23 0 0 0 chr12 95054359 95054382 -48732073 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr12 95054437 95054475 -48731980 + AT_rich Low_complexity Low_complexity 1 38 0 1298 194 18 110 chr12 95054794 95055195 -48731260 + MLT1A1 LTR MaLR 2 365 0 21 57 0 0 chr12 95055319 95055354 -48731101 + AT_rich Low_complexity Low_complexity 1 35 0 219 397 25 8 chr12 95058660 95058781 -48727674 - L2 LINE L2 -9 3263 3141 327 19 38 19 chr12 95059365 95059418 -48727037 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 350 321 58 50 chr12 95060051 95060394 -48726061 + MLT1J LTR MaLR 108 453 -58 1619 203 15 6 chr12 95061284 95061626 -48724829 - MLT2D LTR ERVL -48 349 1 308 306 82 0 chr12 95062237 95062335 -48724120 + MIR SINE MIR 70 175 -87 210 118 0 0 chr12 95062366 95062400 -48724055 + (TA)n Simple_repeat Simple_repeat 2 35 0 438 266 46 0 chr12 95062404 95062513 -48723942 + Tigger3(Golem) DNA MER2_type 3 116 -2913 * 4794 147 47 11 chr12 95062510 95063382 -48723073 + Tigger3(Golem) DNA MER2_type 2118 3020 -9 800 191 25 94 chr12 95063796 95064031 -48722424 - MER20 DNA MER1_type 0 219 1 375 260 10 10 chr12 95065568 95065668 -48720787 + LTR16B LTR ERVL 365 464 0 225 65 0 0 chr12 95066046 95066077 -48720378 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr12 95066159 95066181 -48720274 + (TG)n Simple_repeat Simple_repeat 2 23 0 530 325 168 16 chr12 95066502 95066884 -48719571 + L2 LINE L2 2874 3313 0 757 239 28 6 chr12 95067090 95067270 -48719185 + MER5A DNA MER1_type 1 184 -5 232 274 0 0 chr12 95069391 95069453 -48717002 - MIR SINE MIR -70 192 131 316 266 70 86 chr12 95070438 95070682 -48715773 + L1M4 LINE L1 2914 3153 -2993 22 70 0 0 chr12 95070712 95070755 -48715700 + AT_rich Low_complexity Low_complexity 1 43 0 4816 251 76 38 chr12 95070800 95071171 -48715284 + L1MD1 LINE L1 2850 3205 -3037 6390 93 14 0 chr12 95071171 95072833 -48713622 + L1PA8 LINE L1 4494 6172 0 4816 251 76 38 chr12 95072833 95073785 -48712670 + L1MD1 LINE L1 3205 4119 -2123 1991 139 10 0 chr12 95073785 95074094 -48712361 + AluSx SINE Alu 1 312 0 1897 153 0 0 chr12 95074100 95074407 -48712048 + AluSx SINE Alu 1 307 0 4816 251 76 38 chr12 95074407 95075589 -48710866 + L1MD1 LINE L1 4123 5259 -983 1698 175 14 0 chr12 95075589 95075874 -48710581 + AluJo SINE Alu 3 291 -21 4816 251 76 38 chr12 95075874 95076480 -48709975 + L1MD1 LINE L1 5259 6105 -137 2147 118 0 7 chr12 95076480 95076785 -48709670 + AluSx SINE Alu 2 304 -8 4816 251 76 38 chr12 95076785 95076929 -48709526 + L1MD1 LINE L1 6105 6242 0 21 0 0 0 chr12 95077017 95077038 -48709417 + AT_rich Low_complexity Low_complexity 1 21 0 374 277 214 6 chr12 95077397 95077556 -48708899 - MIR SINE MIR -27 235 44 21 0 0 0 chr12 95078046 95078067 -48708388 + AT_rich Low_complexity Low_complexity 1 21 0 1706 157 3 30 chr12 95078202 95078502 -48707953 - AluSx SINE Alu -15 297 6 2833 16 0 0 chr12 95078701 95079019 -48707436 - AluYb8 SINE Alu 0 318 1 436 261 14 7 chr12 95079105 95079243 -48707212 - L1MC/D LINE L1 -2021 5787 5649 399 197 0 31 chr12 95079407 95079534 -48706921 + GA-rich Low_complexity Low_complexity 3 125 0 815 149 0 11 chr12 95079548 95079722 -48706733 + (GGAA)n Simple_repeat Simple_repeat 1 172 0 820 224 71 0 chr12 95079968 95080138 -48706317 + MER5A DNA MER1_type 8 189 0 183 375 0 16 chr12 95132626 95132690 -48653765 + L2 LINE L2 3118 3180 -92 2191 148 60 26 chr12 95133073 95133492 -48652963 + Tigger2a DNA MER2_type 1 433 -1 252 0 0 0 chr12 95134039 95134067 -48652388 + (CA)n Simple_repeat Simple_repeat 1 28 0 2920 142 22 16 chr12 95134108 95134609 -48651846 - Tigger3b DNA MER2_type -724 507 4 2036 287 58 17 chr12 95134613 95135372 -48651083 - L2 LINE L2 -532 2782 1993 1400 67 0 0 chr12 95135662 95135842 -48650613 + L1P LINE L1 4608 4787 -1359 591 295 67 59 chr12 95135948 95135996 -48650459 + L2 LINE L2 2447 2493 -820 3744 76 179 40 chr12 95135996 95136600 -48649855 - LTR12 LTR ERV1 0 688 1 591 295 67 59 chr12 95136600 95137350 -48649105 + L2 LINE L2 2493 3297 -16 242 323 89 0 chr12 95137516 95137640 -48648815 + MIR SINE MIR 7 141 -121 769 326 122 15 chr12 95138229 95138640 -48647815 - L2 LINE L2 -16 3297 2843 2635 153 57 14 chr12 95138694 95139203 -48647252 - Tigger3(Golem) DNA MER2_type -1 3028 2498 2158 121 3 0 chr12 95139640 95139945 -48646510 - AluSx SINE Alu -6 306 1 1436 197 49 16 chr12 95142251 95142556 -48643899 - MLT1A1 LTR MaLR -41 324 10 1083 222 133 14 chr12 95143784 95143920 -48642535 - MER69 DNA AcHobo -12 2514 2396 5293 65 3 0 chr12 95143920 95144597 -48641858 + L1PA7 LINE L1 5474 6152 -2 1083 222 133 14 chr12 95144597 95144829 -48641626 - MER69 DNA AcHobo -130 2396 2102 233 222 0 0 chr12 95144929 95144974 -48641481 + L2 LINE L2 3263 3307 -6 6022 55 1 0 chr12 95145523 95146269 -48640186 + L1PA5 LINE L1 5393 6139 -15 217 200 118 9 chr12 95146606 95146716 -48639739 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 2155 140 96 10 chr12 95146753 95147147 -48639308 - MSTA LTR MaLR 0 428 1 1932 144 0 13 chr12 95147747 95148053 -48638402 - AluSx SINE Alu -10 302 1 231 146 0 0 chr12 95148073 95148121 -48638334 - Alu SINE Alu -8 292 245 10172 84 5 0 chr12 95148221 95150451 -48636004 + L1PA7 LINE L1 3929 6152 -2 1469 231 62 76 chr12 95150940 95151215 -48635240 - MER34 LTR ERV1 0 542 277 357 218 26 0 chr12 95151215 95151293 -48635162 + L1PB4 LINE L1 6076 6155 -1 1469 231 62 76 chr12 95151293 95151567 -48634888 - MER34 LTR ERV1 -265 277 1 784 283 103 25 chr12 95152113 95152339 -48634116 + L2 LINE L2 1828 2035 -1279 186 43 0 0 chr12 95152339 95152362 -48634093 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 784 283 103 25 chr12 95152362 95152531 -48633924 + L2 LINE L2 2035 2254 -1060 2338 62 7 13 chr12 95155242 95155546 -48630909 - AluY SINE Alu -9 302 1 7574 31 0 0 chr12 95155693 95156736 -48629719 + L1PA3 LINE L1 5113 6155 0 271 118 15 15 chr12 95156741 95156809 -48629646 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 235 356 61 17 chr12 95157996 95158111 -48628344 + MIR SINE MIR 30 149 -59 297 0 0 0 chr12 95158597 95158630 -48627825 + (TG)n Simple_repeat Simple_repeat 2 34 0 2741 182 11 38 chr12 95159560 95160093 -48626362 + Tigger1 DNA MER2_type 24 542 -1876 749 109 0 0 chr12 95160088 95160198 -48626257 + Tigger1 DNA MER2_type 729 838 -1580 * 413 294 119 51 chr12 95161122 95161527 -48624928 - MLT1J LTR MaLR -1 449 37 28 48 0 0 chr12 95161843 95161885 -48624570 + AT_rich Low_complexity Low_complexity 1 42 0 180 53 79 0 chr12 95162164 95162202 -48624253 + (TA)n Simple_repeat Simple_repeat 1 41 0 2082 93 62 0 chr12 95162282 95162573 -48623882 - AluY SINE Alu -2 309 1 957 257 56 62 chr12 95162676 95163215 -48623240 - MLT1E LTR MaLR -2 591 6 231 273 122 75 chr12 95163301 95163579 -48622876 - HAL1 LINE L1 -701 1806 1516 239 260 110 10 chr12 95163642 95163742 -48622713 + L1ME LINE L1 5561 5670 -451 704 243 54 43 chr12 95164210 95164395 -48622060 + MER20 DNA MER1_type 30 216 -3 2054 88 3 63 chr12 95164888 95165207 -48621248 - AluY SINE Alu -11 300 1 304 294 63 32 chr12 95166519 95166645 -48619810 + MIR SINE MIR 20 149 -113 245 384 88 8 chr12 95166800 95166925 -48619530 - MIR3 SINE MIR -54 154 20 1804 156 0 13 chr12 95168219 95168527 -48617928 + AluSc SINE Alu 1 304 -5 400 267 85 30 chr12 95168551 95168716 -48617739 - MIR SINE MIR -27 235 62 1685 154 13 30 chr12 95169775 95170073 -48616382 + AluSx SINE Alu 13 305 -7 665 225 60 6 chr12 95171081 95171263 -48615192 + L1MD3 LINE L1 7795 7986 -9 278 206 59 59 chr12 95172396 95172464 -48613991 + L2 LINE L2 3205 3272 0 186 103 0 0 chr12 95172833 95172862 -48613593 + (A)n Simple_repeat Simple_repeat 1 29 0 398 371 52 21 chr12 95172940 95173228 -48613227 + L2 LINE L2 971 1267 -2047 1968 106 0 7 chr12 95173760 95174035 -48612420 - AluSc SINE Alu -36 273 1 1058 274 45 40 chr12 95174094 95174539 -48611916 - L1ME2 LINE L1 -64 6100 5654 722 128 17 0 chr12 95174820 95174937 -48611518 - AluSx SINE Alu -40 270 152 256 83 0 0 chr12 95174939 95174975 -48611480 - AluSx SINE Alu -194 108 73 1758 160 85 25 chr12 95174998 95175516 -48610939 - MER51A LTR ERV1 -9 625 3 513 118 0 0 chr12 95175518 95175594 -48610861 - AluSx SINE Alu -237 76 1 1644 181 0 33 chr12 95175782 95176085 -48610370 - AluJo SINE Alu -19 293 1 2247 255 52 37 chr12 95176107 95177271 -48609184 - L1ME1 LINE L1 -5 6161 4987 1032 125 31 10 chr12 95177299 95177491 -48608964 + L1MA4 LINE L1 6100 6295 -5 316 238 12 60 chr12 95180173 95180257 -48606198 + L2 LINE L2 3234 3313 0 363 265 111 72 chr12 95180411 95180592 -48605863 + MIR SINE MIR 74 261 -1 393 351 75 0 chr12 95180924 95181058 -48605397 + MER91A DNA MER1_type 53 196 0 186 271 57 107 chr12 95181186 95181363 -48605092 - L2 LINE L2 -34 3279 3112 188 372 20 27 chr12 95181590 95181738 -48604717 - L2 LINE L2 -1167 2147 2001 210 91 0 0 chr12 95181781 95181814 -48604641 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1740 122 3 77 chr12 95182211 95182584 -48603871 + MER4A LTR ERV1 261 664 0 377 324 47 14 chr12 95182626 95182774 -48603681 + MLT1I LTR MaLR 183 335 -74 1010 265 87 72 chr12 95183803 95184356 -48602099 + MLT1F1 LTR MaLR 1 567 0 24 32 0 0 chr12 95184385 95184416 -48602039 + AT_rich Low_complexity Low_complexity 1 31 0 748 195 79 16 chr12 95185012 95185202 -48601253 + L1MC2 LINE L1 6139 6340 -4 201 74 0 0 chr12 95185378 95185405 -48601050 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 492 77 83 24 chr12 95185872 95186041 -48600414 + (TA)n Simple_repeat Simple_repeat 1 179 0 492 77 83 24 chr12 95186052 95186221 -48600234 + (TA)n Simple_repeat Simple_repeat 1 179 0 421 104 98 6 chr12 95186268 95186431 -48600024 + (TA)n Simple_repeat Simple_repeat 1 178 0 420 317 93 19 chr12 95186484 95186796 -48599659 + L1MC4a LINE L1 5679 6013 -1795 21 0 0 0 chr12 95186910 95186931 -48599524 + AT_rich Low_complexity Low_complexity 1 21 0 421 272 8 16 chr12 95187423 95187548 -48598907 - MER5A DNA MER1_type -10 179 56 1221 147 66 22 chr12 95187549 95187980 -48598475 + LTR54 LTR ERV1 1 510 0 24 0 0 0 chr12 95188094 95188118 -48598337 + AT_rich Low_complexity Low_complexity 1 24 0 184 361 19 19 chr12 95188286 95188444 -48598011 - L2 LINE L2 -499 2815 2658 1452 243 47 76 chr12 95188475 95189008 -48597447 + L1ME1 LINE L1 4828 5375 -791 299 88 0 18 chr12 95189008 95189065 -48597390 + (TA)n Simple_repeat Simple_repeat 1 56 0 1452 243 47 76 chr12 95189065 95189402 -48597053 + L1ME1 LINE L1 5375 5720 -446 2419 70 0 0 chr12 95189402 95189700 -48596755 - AluY SINE Alu -13 298 1 1452 243 47 76 chr12 95189700 95189823 -48596632 + L1ME1 LINE L1 5720 5803 -363 1791 217 44 49 chr12 95189823 95190372 -48596083 - LTR55 LTR ERV -2 546 1 1452 243 47 76 chr12 95190372 95190462 -48595993 + L1ME1 LINE L1 5803 5894 -272 766 147 158 43 chr12 95190473 95190657 -48595798 + MER44D DNA MER2_type 9 483 -126 250 202 0 42 chr12 95190691 95190810 -48595645 + (TA)n Simple_repeat Simple_repeat 1 114 0 401 234 0 21 chr12 95190838 95190932 -48595523 + MER44D DNA MER2_type 495 586 -19 663 273 58 25 chr12 95190959 95191221 -48595234 + L1ME1 LINE L1 5896 6178 0 1311 199 39 25 chr12 95191355 95191690 -48594765 + MSTD LTR MaLR 1 396 0 2081 64 21 0 chr12 95192376 95192656 -48593799 - AluY SINE Alu -25 286 1 210 208 0 0 chr12 95192733 95192781 -48593674 + CT-rich Low_complexity Low_complexity 2 49 0 1976 136 0 10 chr12 95192797 95193099 -48593356 - AluSq SINE Alu -14 299 1 216 368 152 26 chr12 95193226 95193845 -48592610 + L2 LINE L2 1696 2392 -922 1130 144 163 0 chr12 95193875 95194077 -48592378 + AluSq SINE Alu 4 238 -75 235 259 142 65 chr12 95196002 95196187 -48590268 - MIR SINE MIR -14 248 36 1702 93 12 27 chr12 95196917 95197176 -48589279 - THE1C LTR MaLR 0 375 121 483 259 21 21 chr12 95197376 95197519 -48588936 + MIR SINE MIR 101 243 -19 319 24 0 0 chr12 95199063 95199104 -48587351 + L1PA3 LINE L1 6112 6152 -3 206 0 0 65 chr12 95199107 95199138 -48587317 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 257 288 0 0 chr12 95200528 95200594 -48585861 + CT-rich Low_complexity Low_complexity 3 68 0 395 265 34 43 chr12 95201584 95201701 -48584754 - L2 LINE L2 -10 3303 3188 313 329 22 0 chr12 95202284 95202421 -48584034 - HAL1 LINE L1 -853 1654 1515 194 299 52 39 chr12 95202742 95202819 -48583636 - L2 LINE L2 -3 3310 3233 710 261 89 46 chr12 95202993 95203296 -48583159 + L2 LINE L2 888 1203 -2111 1120 238 94 8 chr12 95203555 95203937 -48582518 - Charlie4a DNA MER1_type -89 419 5 290 344 24 16 chr12 95204382 95204507 -48581948 + L2 LINE L2 3175 3300 -13 261 0 0 0 chr12 95204507 95204536 -48581919 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr12 95204718 95204747 -48581708 + AT_rich Low_complexity Low_complexity 1 29 0 309 374 24 0 chr12 95205529 95205661 -48580794 + MIR SINE MIR 6 145 -63 25 31 0 0 chr12 95205733 95205765 -48580690 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr12 95206921 95206957 -48579498 + AT_rich Low_complexity Low_complexity 1 36 0 1101 265 80 44 chr12 95206975 95207472 -48578983 + L1ME3A LINE L1 5662 6170 0 1759 134 4 0 chr12 95207701 95207970 -48578485 - AluSx SINE Alu -11 301 32 1571 246 64 16 chr12 95207975 95208537 -48577918 + MER114 LTR ERV 52 640 -8 1660 142 14 17 chr12 95209222 95209545 -48576910 - AluSx SINE Alu 0 322 1 309 167 0 0 chr12 95210642 95210696 -48575759 - Ricksha DNA DNA -2342 904 851 2340 206 29 41 chr12 95210733 95211247 -48575208 - MLT2B3 LTR ERVL -46 508 1 2291 103 0 0 chr12 95211576 95211876 -48574579 - AluSg SINE Alu -7 303 4 33 43 0 0 chr12 95212526 95212573 -48573882 + AT_rich Low_complexity Low_complexity 1 47 0 1719 149 66 39 chr12 95213081 95213444 -48573011 - THE1C LTR MaLR -2 373 1 323 293 91 0 chr12 95213448 95213547 -48572908 + L2 LINE L2 3205 3312 -1 2024 95 3 61 chr12 95213705 95214068 -48572387 - AluY SINE Alu 0 344 1 710 239 46 8 chr12 95215189 95215428 -48571027 + LTR37B LTR ERV1 213 460 -8 3366 164 25 40 chr12 95215923 95216452 -48570003 - L1MC1 LINE L1 -8 6325 5808 2134 109 10 16 chr12 95216452 95216764 -48569691 - AluSq SINE Alu -2 311 2 3366 164 25 40 chr12 95216764 95216960 -48569495 - L1MC1 LINE L1 -525 5808 5611 25 31 0 0 chr12 95217079 95217111 -48569344 + AT_rich Low_complexity Low_complexity 1 32 0 516 162 20 0 chr12 95217736 95217835 -48568620 + L1MA5 LINE L1 6197 6297 -3 2216 244 79 47 chr12 95217998 95219722 -48566733 - L1ME1 LINE L1 -51 6115 4447 4627 97 57 0 chr12 95219722 95220373 -48566082 - LTR12 LTR ERV1 0 688 1 2216 244 79 47 chr12 95220373 95220454 -48566001 - L1ME1 LINE L1 -1719 4447 4370 2179 112 0 3 chr12 95220454 95220750 -48565705 - AluY SINE Alu -16 295 1 2216 244 79 47 chr12 95220750 95220882 -48565573 - L1ME1 LINE L1 -1796 4370 4074 1604 223 147 81 chr12 95220889 95221503 -48564952 - MLT1E1 LTR MaLR 0 654 1 1705 261 42 53 chr12 95221508 95221751 -48564704 - L1ME1 LINE L1 -2074 4072 3828 2053 87 66 0 chr12 95221751 95222038 -48564417 - AluY SINE Alu -5 306 1 1705 261 42 53 chr12 95222038 95222668 -48563787 - L1ME1 LINE L1 -2318 3828 3208 25 65 0 0 chr12 95223902 95223948 -48562507 + AT_rich Low_complexity Low_complexity 1 46 0 1907 137 3 3 chr12 95225854 95226146 -48560309 - AluSg SINE Alu -18 292 1 23 78 0 0 chr12 95227137 95227188 -48559267 + AT_rich Low_complexity Low_complexity 1 51 0 897 297 94 11 chr12 95227887 95228237 -48558218 + L2 LINE L2 2100 2478 -836 279 288 261 10 chr12 95228263 95228558 -48557897 + L1MC/D LINE L1 5277 5645 -2163 549 110 78 0 chr12 95228570 95228724 -48557731 + (TA)n Simple_repeat Simple_repeat 2 167 0 406 99 80 25 chr12 95228735 95228897 -48557558 + (TA)n Simple_repeat Simple_repeat 1 171 0 15710 113 9 31 chr12 95228999 95233059 -48553396 - L1P LINE L1 -2217 3929 12 350 212 44 22 chr12 95233074 95233134 -48553321 + (TA)n Simple_repeat Simple_repeat 2 59 -82 2649 99 0 0 chr12 95233134 95233489 -48552966 + THE1A LTR MaLR 1 355 0 350 212 44 22 chr12 95233489 95233565 -48552890 + (TA)n Simple_repeat Simple_repeat 59 141 0 873 249 55 24 chr12 95234464 95234866 -48551589 + MER31B LTR ERV1 1 466 0 234 0 0 0 chr12 95235800 95235826 -48550629 + (TA)n Simple_repeat Simple_repeat 1 26 0 270 351 48 18 chr12 95236389 95236554 -48549901 - L3b LINE CR1 -132 1451 1282 25 0 0 0 chr12 95237966 95237991 -48548464 + AT_rich Low_complexity Low_complexity 1 25 0 338 161 0 0 chr12 95238404 95238460 -48547995 + THE1C LTR MaLR 4 59 -316 1470 191 24 27 chr12 95238564 95238858 -48547597 + THE1C LTR MaLR 83 375 0 23 54 0 0 chr12 95242090 95242127 -48544328 + AT_rich Low_complexity Low_complexity 1 37 0 2137 172 41 36 chr12 95242337 95242883 -48543572 + MLT2A2 LTR ERVL 1 554 0 193 400 111 0 chr12 95242986 95243076 -48543379 - L2 LINE L2 -32 3240 3141 2345 62 14 0 chr12 95243725 95244017 -48542438 - AluY SINE Alu -15 296 1 622 296 111 5 chr12 95244151 95244522 -48541933 - L1M4 LINE L1 -1108 5038 4629 1324 213 126 3 chr12 95244529 95244839 -48541616 - MER7A DNA MER2_type 0 346 1 1428 226 38 7 chr12 95244839 95245282 -48541173 - L1M4 LINE L1 -1523 4623 4167 705 242 98 9 chr12 95245273 95245600 -48540855 - L1M4 LINE L1 -2849 3297 2942 * 459 281 69 13 chr12 95245632 95245935 -48540520 - L1M4 LINE L1 -3249 2897 2578 820 309 141 29 chr12 95245936 95246899 -48539556 + L2 LINE L2 2256 3311 -2 284 333 128 9 chr12 95247017 95247236 -48539219 - L3b LINE CR1 -157 1426 1182 906 196 40 10 chr12 95247287 95247486 -48538969 + MER3 DNA MER1_type 1 205 -4 383 276 75 5 chr12 95249248 95249462 -48536993 - L1MEc LINE L1 -2890 3239 3011 2687 72 18 16 chr12 95249674 95250060 -48536395 - L1PA7 LINE L1 -3 6151 5765 742 61 0 0 chr12 95250060 95250158 -48536297 + L1P LINE L1 5313 5410 -744 253 286 81 61 chr12 95250424 95250819 -48535636 - L1MEc LINE L1 -4729 1581 1179 413 269 58 95 chr12 95250844 95250914 -48535541 - L1MEc LINE L1 -5084 1035 964 1124 191 27 0 chr12 95250914 95251139 -48535316 + MER46A DNA MER2_type 2 232 -4 413 269 58 95 chr12 95251139 95251500 -48534955 - L1MEc LINE L1 -5155 964 620 655 297 5 0 chr12 95251553 95251738 -48534717 + L2 LINE L2 2489 2674 -640 261 273 68 62 chr12 95251778 95251954 -48534501 + L2 LINE L2 3020 3196 -117 1769 166 7 3 chr12 95252035 95252325 -48534130 - AluSx SINE Alu -15 297 7 295 293 70 70 chr12 95253126 95253399 -48533056 - L2 LINE L2 -58 3255 2983 477 311 79 39 chr12 95253416 95253696 -48532759 - L2 LINE L2 -498 2816 2526 24 32 0 0 chr12 95255305 95255336 -48531119 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 95255565 95255588 -48530867 + AT_rich Low_complexity Low_complexity 1 23 0 244 340 41 0 chr12 95255959 95256056 -48530399 + L2 LINE L2 3141 3241 -31 1678 171 52 35 chr12 95256158 95256527 -48529928 - THE1C LTR MaLR 0 375 1 8921 157 9 36 chr12 95256527 95258147 -48528308 - THE1C-int LTR MaLR 0 1580 4 1851 158 52 27 chr12 95258150 95258516 -48527939 - THE1C LTR MaLR 0 375 1 2313 117 11 40 chr12 95258893 95259119 -48527336 + THE1B LTR MaLR 1 213 -151 2805 13 0 0 chr12 95259119 95259425 -48527030 + AluYb8 SINE Alu 1 306 -12 2313 117 11 40 chr12 95259425 95259573 -48526882 + THE1B LTR MaLR 213 364 0 387 0 0 0 chr12 95259872 95259915 -48526540 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 0 0 0 chr12 95259917 95259941 -48526514 - MER4E LTR ERV1 -95 684 661 2148 188 30 19 chr12 95259941 95260404 -48526051 + LTR27 LTR ERV1 2 469 -167 28 0 0 0 chr12 95260994 95261022 -48525433 + AT_rich Low_complexity Low_complexity 1 28 0 238 266 71 19 chr12 95261045 95261199 -48525256 + L1MEc LINE L1 1429 1590 -4806 821 278 115 27 chr12 95261242 95262293 -48524162 + L1MEc LINE L1 1703 2787 -3428 378 219 0 0 chr12 95262298 95262362 -48524093 + Tigger7 DNA MER2_type 1 64 -275 230 229 30 30 chr12 95262680 95262811 -48523644 + (TA)n Simple_repeat Simple_repeat 2 132 0 1708 150 3 64 chr12 95263488 95263802 -48522653 + AluSx SINE Alu 1 295 -17 679 196 137 64 chr12 95263802 95264021 -48522434 - L1MC2 LINE L1 -57 6287 6053 312 333 10 56 chr12 95264432 95264627 -48521828 - MER5A DNA MER1_type 0 189 4 199 323 174 12 chr12 95265015 95265182 -48521273 - L3 LINE CR1 -356 1221 1028 242 295 42 32 chr12 95265284 95265379 -48521076 - MIR SINE MIR -87 175 80 2572 244 73 14 chr12 95265781 95267396 -48519059 - L1ME1 LINE L1 -76 6090 4383 218 308 115 13 chr12 95267757 95267835 -48518620 - MER5B DNA MER1_type -89 89 4 25 0 0 0 chr12 95268669 95268694 -48517761 + AT_rich Low_complexity Low_complexity 1 25 0 416 238 0 0 chr12 95269488 95269568 -48516887 - Tigger5 DNA MER2_type -2 2321 2242 363 238 0 12 chr12 95269634 95269714 -48516741 - Tigger5 DNA MER2_type -2244 79 1 2264 104 0 0 chr12 95270730 95271029 -48515426 + AluSg SINE Alu 1 299 -11 213 290 130 0 chr12 95271120 95271189 -48515266 + L2 LINE L2 3158 3235 -37 1355 193 3 38 chr12 95271749 95272039 -48514416 - AluJb SINE Alu -2 310 31 780 197 33 64 chr12 95272039 95272369 -48514086 + pTR5 LTR ERV1 743 1062 -1376 3947 153 69 59 chr12 95272380 95273442 -48513013 + pTR5 LTR ERV1 116 2603 -3 245 303 97 43 chr12 95273630 95273815 -48512640 + MIR3 SINE MIR 12 206 -2 240 122 0 0 chr12 95274157 95274198 -48512257 + (TG)n Simple_repeat Simple_repeat 2 42 0 443 273 68 19 chr12 95276858 95277019 -48509436 - MIR SINE MIR -54 208 40 691 274 57 14 chr12 95277394 95277606 -48508849 + MIR SINE MIR 21 241 -21 191 59 0 29 chr12 95277633 95277667 -48508788 + (TG)n Simple_repeat Simple_repeat 2 34 0 246 346 131 2 chr12 95277937 95278090 -48508365 - MIR SINE MIR -62 146 27 251 263 18 0 chr12 95278303 95278360 -48508095 + MLT1J LTR MaLR 111 168 -343 753 169 8 0 chr12 95278622 95278752 -48507703 - AluJb SINE Alu -181 131 1 871 57 0 0 chr12 95279067 95279172 -48507283 + AluY SINE Alu 1 105 -206 24 0 0 0 chr12 95279172 95279196 -48507259 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr12 95279283 95279324 -48507131 + AT_rich Low_complexity Low_complexity 1 41 0 227 275 0 38 chr12 95279512 95279592 -48506863 + HsTC2 DNA Tc2 2 78 -1820 2869 192 42 59 chr12 95279921 95280651 -48505804 + L1MB3 LINE L1 5466 6183 0 235 254 0 0 chr12 95280662 95280717 -48505738 + HsTC2 DNA Tc2 1840 1894 -4 813 340 118 37 chr12 95280754 95281278 -48505177 - L2 LINE L2 -1736 1578 1098 323 240 136 24 chr12 95281278 95281403 -48505052 + MIR SINE MIR 124 262 0 813 340 118 37 chr12 95281403 95282081 -48504374 - L2 LINE L2 -2216 1098 120 618 141 0 10 chr12 95283432 95283531 -48502924 + MER4A LTR ERV1 1 98 -566 1746 114 165 76 chr12 95283531 95283900 -48502555 + MER4A LTR ERV1 263 664 0 23 78 0 0 chr12 95283968 95284019 -48502436 + AT_rich Low_complexity Low_complexity 1 51 0 491 267 70 37 chr12 95284774 95284961 -48501494 - MIR SINE MIR -50 212 20 828 250 82 77 chr12 95285512 95285900 -48500555 - MLT1H1 LTR MaLR -9 546 157 317 294 84 14 chr12 95285935 95286078 -48500377 + L2 LINE L2 3160 3312 -1 1799 159 13 13 chr12 95286094 95286227 -48500228 + AluSx SINE Alu 1 133 -179 2355 77 0 3 chr12 95286227 95286537 -48499918 + AluY SINE Alu 1 309 -2 1799 159 13 13 chr12 95286537 95286704 -48499751 + AluSx SINE Alu 132 301 -11 306 125 0 0 chr12 95286866 95286914 -48499541 + (T)n Simple_repeat Simple_repeat 1 48 0 391 291 26 26 chr12 95286918 95287035 -48499420 - MIR SINE MIR -68 194 78 1388 249 104 53 chr12 95287527 95288576 -48497879 + L1MD1 LINE L1 370 1449 -4631 898 228 10 5 chr12 95288583 95288785 -48497670 - MLT1B LTR MaLR 0 390 188 467 202 186 15 chr12 95288819 95288976 -48497479 - MLT1B LTR MaLR -183 191 25 889 298 36 38 chr12 95289028 95289478 -48496977 + L1MD1 LINE L1 1491 1939 -4322 243 192 0 0 chr12 95289799 95289851 -48496604 - L2 LINE L2 -1 3312 3261 2580 40 0 0 chr12 95290116 95290420 -48496035 + AluY SINE Alu 1 304 -7 755 300 40 85 chr12 95290582 95291276 -48495179 - L2 LINE L2 -20 3293 2565 27 0 0 26 chr12 95291830 95291841 -48494614 + AT_rich Low_complexity Low_complexity 1 11 -26 358 123 0 0 chr12 95291841 95291898 -48494557 + L1PA8 LINE L1 6111 6167 -5 27 0 0 26 chr12 95291898 95291924 -48494531 + AT_rich Low_complexity Low_complexity 11 37 0 863 222 38 0 chr12 95293209 95293448 -48493007 + L1MD1 LINE L1 2621 2868 -3212 * 901 228 43 18 chr12 95293444 95293725 -48492730 + L1MD1 LINE L1 4919 5206 -874 2966 200 46 7 chr12 95293770 95294466 -48491989 + L1MD1 LINE L1 5192 5914 -262 21 57 0 0 chr12 95294469 95294504 -48491951 + AT_rich Low_complexity Low_complexity 1 35 0 287 104 0 0 chr12 95294511 95294559 -48491896 + MER93b LTR ERV1 322 369 -4 334 290 73 65 chr12 95294567 95294812 -48491643 + MER93b-int LTR ERV1 3 249 -7288 189 0 0 0 chr12 95294880 95294901 -48491554 + (A)n Simple_repeat Simple_repeat 1 21 0 1380 214 47 0 chr12 95295285 95295440 -48491015 - AluJb SINE Alu -23 289 114 219 88 0 0 chr12 95295440 95295474 -48490981 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1380 214 47 0 chr12 95295474 95295594 -48490861 - AluJb SINE Alu -198 114 1 286 214 14 14 chr12 95295623 95295693 -48490762 + MER93b-int LTR ERV1 1234 1303 -3568 1254 143 104 13 chr12 95295979 95296209 -48490246 - MSTA LTR MaLR 0 428 178 2506 55 3 6 chr12 95296247 95296559 -48489896 - AluY SINE Alu 0 311 1 278 140 185 51 chr12 95296679 95296846 -48489609 + MER93b-int LTR ERV1 1570 2157 -2779 180 0 0 0 chr12 95296969 95296989 -48489466 + (TA)n Simple_repeat Simple_repeat 2 21 0 946 200 0 0 chr12 95296989 95297164 -48489291 + AluSg/x SINE Alu 137 311 -1 1507 221 100 66 chr12 95297168 95297756 -48488699 + MER93b-int LTR ERV1 5421 6028 -303 486 242 81 21 chr12 95298104 95298398 -48488057 + MER93b LTR ERV1 3 346 -27 1315 180 31 0 chr12 95298409 95298665 -48487790 + L1MD1 LINE L1 5913 6176 0 2150 108 0 0 chr12 95298845 95299133 -48487322 - AluSc SINE Alu -21 288 1 587 135 10 0 chr12 95299996 95300100 -48486355 + L1MA7 LINE L1 6187 6291 0 180 404 31 19 chr12 95300396 95300557 -48485898 + MIR SINE MIR 92 254 -8 232 298 24 36 chr12 95300758 95300842 -48485613 + MIR SINE MIR 180 262 0 198 417 42 7 chr12 95301075 95301219 -48485236 - L2 LINE L2 -21 3251 3103 22 0 0 0 chr12 95301252 95301274 -48485181 + AT_rich Low_complexity Low_complexity 1 22 0 516 32 0 0 chr12 95301478 95301540 -48484915 + (TA)n Simple_repeat Simple_repeat 1 62 0 1467 180 28 75 chr12 95303248 95303612 -48482843 - AluJo SINE Alu 0 354 6 185 0 0 39 chr12 95303631 95303657 -48482798 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 567 0 0 0 chr12 95303878 95303941 -48482514 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 223 286 0 16 chr12 95303945 95304008 -48482447 + A-rich Low_complexity Low_complexity 1 62 0 535 156 18 94 chr12 95354614 95354838 -48431617 + AluSq SINE Alu 101 307 -6 256 158 88 0 chr12 95354900 95354957 -48431498 + L1MB7 LINE L1 6058 6119 -65 622 277 173 24 chr12 95355001 95355377 -48431078 + L1MC4 LINE L1 5474 5905 -1903 390 346 178 27 chr12 95356699 95357103 -48429352 - L2 LINE L2 -36 3277 2813 3065 185 68 12 chr12 95357110 95357828 -48428627 - L1MB7 LINE L1 0 6184 5427 498 227 31 0 chr12 95357825 95357953 -48428502 - L1MB7 LINE L1 -1793 4353 4222 * 6777 231 41 23 chr12 95357951 95359936 -48426519 - L1M4 LINE L1 -1564 4582 2554 1737 175 10 13 chr12 95359936 95360245 -48426210 + AluJo SINE Alu 1 308 -4 6777 231 41 23 chr12 95360245 95360410 -48426045 - L1M4 LINE L1 -3592 2554 2393 254 320 107 40 chr12 95360483 95360633 -48425822 - MIR SINE MIR 0 262 103 234 205 39 51 chr12 95361209 95361287 -48425168 + L1MC4 LINE L1 6627 6703 -1339 1039 240 26 38 chr12 95362767 95363080 -48423375 + L1MDa LINE L1 268 576 -5964 1912 133 0 11 chr12 95363633 95363957 -48422498 + AluJb SINE Alu 1 321 0 23 0 0 0 chr12 95365428 95365451 -48421004 + AT_rich Low_complexity Low_complexity 1 23 0 444 342 81 40 chr12 95365620 95365942 -48420513 - L2 LINE L2 0 3272 2938 342 45 0 0 chr12 95366275 95366319 -48420136 + (CA)n Simple_repeat Simple_repeat 2 45 0 376 347 105 48 chr12 95366349 95367148 -48419307 - L2 LINE L2 -1197 2117 1273 440 294 9 0 chr12 95367162 95367271 -48419184 - MER81 DNA DNA -4 110 1 22 35 0 0 chr12 95367664 95367693 -48418762 + AT_rich Low_complexity Low_complexity 1 29 0 336 331 62 6 chr12 95368171 95368331 -48418124 + MIR SINE MIR 70 238 -24 905 141 94 0 chr12 95368379 95368549 -48417906 + L1MB1 LINE L1 5945 6130 -38 669 265 112 28 chr12 95368586 95368801 -48417654 - MIR SINE MIR -4 258 26 2177 118 41 39 chr12 95368929 95369292 -48417163 + THE1B LTR MaLR 1 364 0 398 329 75 5 chr12 95369739 95369952 -48416503 + MIR SINE MIR 35 262 0 22 0 0 0 chr12 95371255 95371277 -48415178 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 95374087 95374109 -48412346 + AT_rich Low_complexity Low_complexity 1 22 0 207 341 85 16 chr12 95374342 95374471 -48411984 + L2 LINE L2 2494 2631 -683 799 185 28 110 chr12 95374525 95374779 -48411676 - L1MB8 LINE L1 -6 6172 5940 3328 169 23 2 chr12 95374828 95375433 -48411022 - L1MA6 LINE L1 -236 6064 5447 6230 136 12 9 chr12 95375546 95376527 -48409928 + HERV9 LTR ERV1 54 1037 -7362 * 16017 101 21 8 chr12 95376495 95378764 -48407691 + HERV9 LTR ERV1 1164 3461 -4938 451 245 48 63 chr12 95378781 95379092 -48407363 + MLT1H LTR MaLR 200 549 0 1537 144 61 1 chr12 95379336 95379751 -48406704 + LTR19A LTR ERV1 1 472 -14 303 291 68 29 chr12 95379990 95380093 -48406362 + MER91C DNA MER1_type 33 139 -1 300 303 55 9 chr12 95381267 95381376 -48405079 + MIR SINE MIR 35 148 -114 27 49 0 0 chr12 95381819 95381860 -48404595 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr12 95383257 95383279 -48403176 + AT_rich Low_complexity Low_complexity 1 22 0 1200 199 59 31 chr12 95384164 95384450 -48402005 - AluJb SINE Alu -7 295 2 22 0 0 0 chr12 95384455 95384477 -48401978 + AT_rich Low_complexity Low_complexity 1 22 0 2130 102 33 97 chr12 95385288 95385710 -48400745 + MER48 LTR ERV1 4 398 0 186 320 62 10 chr12 95386068 95386165 -48400290 + MIR SINE MIR 111 212 -50 408 240 109 109 chr12 95387026 95387209 -48399246 - MIR SINE MIR -13 249 67 232 219 109 47 chr12 95387257 95387321 -48399134 - MER5A DNA MER1_type -118 71 4 23 33 0 0 chr12 95388554 95388584 -48397871 + AT_rich Low_complexity Low_complexity 1 30 0 194 308 27 75 chr12 95388986 95389132 -48397323 + L2 LINE L2 2842 2980 -292 282 331 124 0 chr12 95389213 95389334 -48397121 + L2 LINE L2 3134 3269 -3 342 233 0 0 chr12 95391394 95391527 -48394928 + CT-rich Low_complexity Low_complexity 2 134 0 220 250 0 0 chr12 95391550 95391606 -48394849 + CT-rich Low_complexity Low_complexity 1 56 0 205 152 0 0 chr12 95392355 95392388 -48394067 + (CCG)n Simple_repeat Simple_repeat 2 34 0 365 316 86 16 chr12 95393364 95393551 -48392904 - MIR SINE MIR -57 205 6 506 173 26 122 chr12 95393883 95394039 -48392416 + MER6 DNA MER2_type 4 865 0 1254 166 58 0 chr12 95395126 95395385 -48391070 - L1MA6 LINE L1 -5 6295 6022 1042 286 22 22 chr12 95395488 95395631 -48390824 - MLT1E LTR MaLR 0 593 451 2438 113 5 24 chr12 95395631 95396002 -48390453 + THE1B LTR MaLR 1 364 0 1042 286 22 22 chr12 95396002 95396176 -48390279 - MLT1E LTR MaLR -141 452 276 434 184 54 101 chr12 95396402 95396570 -48389885 - MLT1E LTR MaLR -433 160 1 459 262 91 32 chr12 95397697 95397918 -48388537 + ORSL DNA AcHobo 42 275 0 363 259 165 13 chr12 95398220 95398378 -48388077 + MIR SINE MIR 80 261 -1 247 253 13 27 chr12 95399112 95399187 -48387268 + MLT1E3 LTR MaLR 1 74 -550 1599 133 0 4 chr12 95399210 95399443 -48387012 + AluSc SINE Alu 6 237 -72 490 325 75 24 chr12 95399680 95399892 -48386563 - MLT1J2 LTR MaLR -25 425 203 575 260 8 8 chr12 95402691 95402818 -48383637 - MER5B DNA MER1_type -51 127 1 1851 170 49 18 chr12 95403012 95403341 -48383114 - MER1B DNA MER1_type 0 339 1 725 216 96 0 chr12 95403726 95403893 -48382562 - MER5A DNA MER1_type 0 189 7 22 80 0 0 chr12 95404703 95404753 -48381702 + AT_rich Low_complexity Low_complexity 1 50 0 657 273 162 5 chr12 95405306 95405522 -48380933 - MIR SINE MIR -12 250 1 27 0 0 0 chr12 95406640 95406667 -48379788 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr12 95407345 95407374 -48379081 + AT_rich Low_complexity Low_complexity 1 29 0 400 192 0 0 chr12 95407374 95407447 -48379008 - L1PA16 LINE L1 -14 6152 6080 715 254 22 22 chr12 95409008 95409193 -48377262 + MIR SINE MIR 74 258 -4 1128 256 142 39 chr12 95409693 95410255 -48376200 - MLT1E3 LTR MaLR 0 624 5 202 296 12 37 chr12 95412072 95412153 -48374302 + GA-rich Low_complexity Low_complexity 3 81 0 2021 125 0 13 chr12 95412895 95413200 -48373255 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr12 95413569 95413605 -48372850 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr12 95413792 95413829 -48372626 + AT_rich Low_complexity Low_complexity 1 37 0 201 154 0 0 chr12 95413926 95413965 -48372490 + (ATG)n Simple_repeat Simple_repeat 3 41 0 203 123 62 0 chr12 95413979 95414014 -48372441 - MIR SINE MIR -119 143 106 23 0 0 0 chr12 95414086 95414109 -48372346 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 95414515 95414536 -48371919 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 95415455 95415477 -48370978 + AT_rich Low_complexity Low_complexity 1 22 0 198 333 147 34 chr12 95417961 95418138 -48368317 - L3 LINE CR1 -347 1230 1034 978 361 165 13 chr12 95418788 95419975 -48366480 + L2 LINE L2 312 1679 -1635 292 329 20 40 chr12 95420210 95420359 -48366096 + L2 LINE L2 1714 1859 -1455 364 333 19 12 chr12 95420419 95420581 -48365874 + L2 LINE L2 2040 2202 -1112 497 270 101 7 chr12 95420636 95420784 -48365671 - MIR SINE MIR -93 169 8 316 299 175 69 chr12 95420810 95421228 -48365227 + L2 LINE L2 2234 2695 -619 24 0 0 0 chr12 95421280 95421304 -48365151 + AT_rich Low_complexity Low_complexity 1 24 0 6300 70 12 0 chr12 95421310 95422133 -48364322 - L1PA7 LINE L1 -5 6149 5317 458 337 145 18 chr12 95422136 95422657 -48363798 + L2 LINE L2 2726 3313 0 299 226 39 29 chr12 95422982 95423084 -48363371 - MLT1K LTR MaLR 0 588 486 582 251 232 34 chr12 95423334 95423597 -48362858 + L2 LINE L2 2998 3312 -1 5196 217 34 25 chr12 95424108 95425492 -48360963 - L1PA15 LINE L1 -1729 4417 3022 4683 156 24 15 chr12 95425493 95427200 -48359255 + L1PA15 LINE L1 4435 6152 -13 22 0 0 0 chr12 95427506 95427528 -48358927 + AT_rich Low_complexity Low_complexity 1 22 0 217 194 30 45 chr12 95427691 95427758 -48358697 - MIR SINE MIR -56 206 141 202 389 44 0 chr12 95427747 95427837 -48358618 - MIR3 SINE MIR -105 103 10 * 729 288 51 28 chr12 95427908 95428301 -48358154 - HAL1b LINE L1 -629 719 318 4148 214 95 13 chr12 95428616 95430217 -48356238 + L1MCb LINE L1 407 2139 -4425 268 191 44 29 chr12 95430229 95430297 -48356158 + L1MCb LINE L1 2195 2263 -4301 * 2946 196 18 8 chr12 95430293 95430910 -48355545 + L1MC2 LINE L1 5696 6318 -26 202 250 15 103 chr12 95430952 95431020 -48355435 - L2 LINE L2 0 3272 3211 207 0 0 0 chr12 95433083 95433106 -48353349 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 304 0 0 chr12 95433168 95433247 -48353208 + L1ME4a LINE L1 5950 6028 -93 25 0 0 0 chr12 95433464 95433489 -48352966 + AT_rich Low_complexity Low_complexity 1 25 0 1725 177 0 0 chr12 95433512 95433794 -48352661 - AluJb SINE Alu -30 282 1 708 169 47 35 chr12 95433881 95434053 -48352402 + MER53 DNA DNA 4 177 -12 2429 190 18 18 chr12 95434646 95435103 -48351352 - MLT2C2 LTR ERVL -7 457 1 22 35 0 0 chr12 95436017 95436046 -48350409 + AT_rich Low_complexity Low_complexity 1 29 0 190 339 179 13 chr12 95436170 95436394 -48350061 - L2 LINE L2 -10 3303 3043 297 277 25 82 chr12 95437048 95437366 -48349089 + L1MCb LINE L1 2372 2671 -4074 376 206 31 100 chr12 95437367 95437467 -48348988 + L1ME2 LINE L1 5798 5885 -279 2095 187 41 12 chr12 95437467 95437879 -48348576 - MSTB LTR MaLR -2 424 1 376 206 31 100 chr12 95437879 95437938 -48348517 + L1ME2 LINE L1 5885 5946 -218 1044 187 64 107 chr12 95437941 95438267 -48348188 - MLT1A1 LTR MaLR -2 363 52 * 1687 173 79 20 chr12 95438255 95438421 -48348034 - MER46B DNA MER2_type -2495 236 163 2158 172 53 5 chr12 95438421 95438833 -48347622 + MSTB1 LTR MaLR 1 432 0 1687 173 79 20 chr12 95438833 95439007 -48347448 - MER46B DNA MER2_type -2568 163 1 260 217 83 0 chr12 95439008 95439068 -48347387 - MLT1A1 LTR MaLR -300 65 1 554 305 15 25 chr12 95439069 95439272 -48347183 + L1ME2 LINE L1 5945 6145 -19 353 345 23 17 chr12 95439892 95440069 -48346386 - MLT1H LTR MaLR -287 262 85 940 300 96 10 chr12 95440128 95440827 -48345628 + L1MCb LINE L1 3038 3796 -2768 23 33 0 0 chr12 95440881 95440911 -48345544 + AT_rich Low_complexity Low_complexity 1 30 0 588 256 24 30 chr12 95440926 95441094 -48345361 - MIR SINE MIR 0 262 96 222 264 29 43 chr12 95441115 95441255 -48345200 + (CAAAG)n Simple_repeat Simple_repeat 1 138 0 302 341 45 45 chr12 95441735 95441911 -48344544 - L2 LINE L2 -1381 1933 1758 243 333 35 14 chr12 95444205 95444346 -48342109 + MLT1K LTR MaLR 423 566 -22 690 309 63 58 chr12 95445289 95446052 -48340403 + L1ME LINE L1 322 1088 -4982 1534 199 29 61 chr12 95446108 95446293 -48340162 - MLT1B LTR MaLR -26 364 196 185 0 40 0 chr12 95446293 95446318 -48340137 + (GA)n Simple_repeat Simple_repeat 1 26 0 1534 199 29 61 chr12 95446318 95446508 -48339947 - MLT1B LTR MaLR -194 196 1 534 280 62 50 chr12 95446508 95446603 -48339852 + L1ME LINE L1 1160 1252 -5009 204 40 0 0 chr12 95446603 95446628 -48339827 + (CA)n Simple_repeat Simple_repeat 2 26 0 534 280 62 50 chr12 95446628 95446871 -48339584 + L1ME LINE L1 1252 1502 -4759 * 1848 191 69 7 chr12 95446865 95447273 -48339182 + L1MA3 LINE L1 5873 6305 0 257 285 125 42 chr12 95447280 95447592 -48338863 + L1ME LINE L1 1493 1830 -4431 210 344 63 48 chr12 95448937 95449126 -48337329 - MIR3 SINE MIR -1 207 16 278 369 77 5 chr12 95449317 95449512 -48336943 + LTR16C LTR ERVL 256 464 -27 2216 71 3 10 chr12 95450562 95450857 -48335598 - AluY SINE Alu -18 293 1 226 211 0 0 chr12 95451201 95451239 -48335216 + (TG)n Simple_repeat Simple_repeat 1 38 0 818 244 19 94 chr12 95452146 95452454 -48334001 - MLT1A1 LTR MaLR 0 365 81 751 222 19 61 chr12 95452531 95452743 -48333712 + MLT1B LTR MaLR 188 390 0 189 211 158 35 chr12 95452986 95453043 -48333412 + L3 LINE CR1 433 496 -1081 346 289 97 18 chr12 95454042 95454270 -48332185 + HAL1 LINE L1 2258 2503 -4 458 290 40 108 chr12 95454364 95454761 -48331694 - MLT1I LTR MaLR 0 409 40 201 167 0 0 chr12 95455118 95455154 -48331301 + (TAA)n Simple_repeat Simple_repeat 2 37 0 527 272 0 0 chr12 95456272 95456386 -48330069 + MIR SINE MIR 3 116 -146 195 327 115 27 chr12 95456480 95456810 -48329645 + L2 LINE L2 726 1084 -2230 683 318 42 4 chr12 95456959 95457198 -48329257 - MIR SINE MIR -6 256 9 228 182 0 0 chr12 95457575 95457619 -48328836 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 297 279 29 0 chr12 95457771 95457839 -48328616 + MER21B LTR ERV1 19 88 -775 3062 227 84 17 chr12 95457842 95458596 -48327859 + MER21B LTR ERV1 42 845 -18 262 367 115 36 chr12 95459363 95459755 -48326700 + L2 LINE L2 2272 2694 -620 964 265 35 15 chr12 95459778 95460039 -48326416 - MIR SINE MIR 0 262 4 519 371 65 18 chr12 95460417 95460800 -48325655 - L3 LINE CR1 -15 1562 1162 323 242 54 47 chr12 95461011 95461160 -48325295 - MER103 DNA DNA -10 156 7 207 0 0 0 chr12 95462926 95462949 -48323506 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 201 325 57 67 chr12 95463595 95463789 -48322666 - MIR SINE MIR -56 206 15 188 341 103 0 chr12 95464374 95464500 -48321955 + MIR SINE MIR 51 189 -73 610 232 125 36 chr12 95464500 95464668 -48321787 + MER5A DNA MER1_type 2 184 -5 552 230 86 24 chr12 95465762 95465912 -48320543 + MER5A DNA MER1_type 2 148 -30 300 53 0 0 chr12 95467951 95467989 -48318466 + (TC)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr12 95468012 95468038 -48318417 + (TA)n Simple_repeat Simple_repeat 1 26 0 240 141 28 14 chr12 95468314 95468385 -48318070 + (TA)n Simple_repeat Simple_repeat 2 73 0 529 327 97 58 chr12 95470447 95471120 -48315335 + L2 LINE L2 1785 2483 -831 226 271 0 0 chr12 95471548 95471596 -48314859 + L2 LINE L2 3225 3272 0 211 388 0 0 chr12 95471712 95471792 -48314663 + MIR SINE MIR 49 128 -134 227 269 64 0 chr12 95471893 95471971 -48314484 - MIR3 SINE MIR -15 193 111 24 0 0 0 chr12 95472430 95472454 -48314001 + AT_rich Low_complexity Low_complexity 1 24 0 367 275 84 39 chr12 95472548 95472726 -48313729 - HAL1 LINE L1 -29 2478 2293 322 221 64 50 chr12 95472766 95472906 -48313549 - HAL1 LINE L1 -313 2194 2053 731 234 9 72 chr12 95473018 95473240 -48313215 + MIR SINE MIR 11 218 -44 796 279 140 74 chr12 95473725 95474809 -48311646 - HAL1 LINE L1 -701 1806 651 318 269 11 11 chr12 95474817 95474910 -48311545 + (CATA)n Simple_repeat Simple_repeat 3 95 0 1104 345 41 16 chr12 95476427 95476987 -48309468 - ERVL LTR ERVL -3044 2720 2147 280 354 60 43 chr12 95477215 95477517 -48308938 - ERVL LTR ERVL -3947 1817 1511 1481 239 31 8 chr12 95477573 95477928 -48308527 + MLT1A1 LTR MaLR 3 365 0 1135 201 114 22 chr12 95479203 95479536 -48306919 - MSTA LTR MaLR 0 375 1 21 0 0 0 chr12 95480092 95480113 -48306342 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr12 95480686 95480724 -48305731 + AT_rich Low_complexity Low_complexity 1 38 0 381 274 137 8 chr12 95481139 95481263 -48305192 + MIR SINE MIR 79 218 -44 25 0 0 0 chr12 95481630 95481655 -48304800 + AT_rich Low_complexity Low_complexity 1 25 0 2227 101 0 10 chr12 95482783 95483089 -48303366 - AluSx SINE Alu -9 303 1 2377 48 0 35 chr12 95483259 95483569 -48302886 + AluY SINE Alu 2 300 -11 452 305 26 19 chr12 95485093 95485247 -48301208 - MER5A DNA MER1_type -26 163 9 228 184 0 0 chr12 95486143 95486192 -48300263 + GA-rich Low_complexity Low_complexity 5 53 0 22 35 0 0 chr12 95486650 95486679 -48299776 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr12 95486899 95486931 -48299524 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 427 150 6 66 chr12 95487544 95487711 -48298744 + GA-rich Low_complexity Low_complexity 4 160 0 465 303 40 29 chr12 95487789 95487964 -48298491 - L2 LINE L2 -8 3305 3129 310 335 138 18 chr12 95488853 95489020 -48297435 - MIR3 SINE MIR -7 201 15 412 320 67 0 chr12 95489127 95489277 -48297178 + MIR SINE MIR 48 207 -55 300 186 0 0 chr12 95489435 95489494 -48296961 + GA-rich Low_complexity Low_complexity 3 61 0 195 69 0 0 chr12 95490191 95490220 -48296235 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 359 75 0 181 chr12 95490289 95490383 -48296072 + L1PB2 LINE L1 5956 6032 -119 21 0 0 0 chr12 95490882 95490903 -48295552 + AT_rich Low_complexity Low_complexity 1 21 0 494 125 38 0 chr12 95491758 95491838 -48294617 - MLT1C LTR MaLR -384 83 1 609 283 17 39 chr12 95491839 95491919 -48294536 - L2 LINE L2 -655 2659 2579 1647 157 142 9 chr12 95491919 95492250 -48294205 - THE1C LTR MaLR 0 375 1 609 283 17 39 chr12 95492250 95492402 -48294053 - L2 LINE L2 -735 2579 2432 467 281 22 7 chr12 95492408 95492543 -48293912 + MIR SINE MIR 68 204 -58 22 56 0 0 chr12 95492599 95492635 -48293820 + AT_rich Low_complexity Low_complexity 1 36 0 1179 237 37 60 chr12 95492805 95493244 -48293211 - MER39 LTR ERV1 -1 683 274 396 302 77 4 chr12 95493347 95493556 -48292899 - L1ME2 LINE L1 -224 5929 5701 263 288 38 0 chr12 95493630 95493710 -48292745 + MER5A DNA MER1_type 9 91 -98 192 307 27 13 chr12 95493652 95493727 -48292728 - MER5A DNA MER1_type -22 167 92 * 189 367 0 0 chr12 95493711 95493771 -48292684 + MER5A DNA MER1_type 130 189 0 * 409 340 43 40 chr12 95493771 95494141 -48292314 - L1ME2 LINE L1 -524 5623 5253 355 301 79 57 chr12 95494164 95494723 -48291732 - L1ME2 LINE L1 -942 5187 4617 227 360 140 0 chr12 95494797 95494961 -48291494 - LTR50 LTR ERVL -607 188 2 1883 82 0 0 chr12 95495044 95495339 -48291116 - L1PA5 LINE L1 0 6154 5898 493 214 39 0 chr12 95495560 95495663 -48290792 + Tigger3(Golem) DNA MER2_type 2920 3026 -3 491 291 91 45 chr12 95495821 95496549 -48289906 - L1ME2 LINE L1 -3128 3001 2241 6182 110 27 9 chr12 95496688 95497682 -48288773 - L1PA11 LINE L1 -1 7611 6613 2220 101 0 3 chr12 95497683 95497979 -48288476 - AluSg SINE Alu -2 308 14 20045 199 29 25 chr12 95497988 95498800 -48287655 - L1PA11 LINE L1 -1173 6411 5604 1764 163 62 14 chr12 95498800 95499156 -48287299 - THE1C LTR MaLR -2 373 1 20045 199 29 25 chr12 95499156 95499630 -48286825 - L1PA11 LINE L1 -1980 5604 5133 336 24 0 0 chr12 95499630 95499671 -48286784 + (TTG)n Simple_repeat Simple_repeat 3 43 0 20045 199 29 25 chr12 95499671 95503688 -48282767 - L1PA11 LINE L1 -2451 5133 7 273 272 19 19 chr12 95504184 95504287 -48282168 - L1ME2 LINE L1 -4662 1467 1365 410 318 92 42 chr12 95504301 95504562 -48281893 - L1ME2 LINE L1 -4886 1233 960 1122 216 0 0 chr12 95504573 95504795 -48281660 - L1 LINE L1 -1921 4225 4004 1239 199 29 0 chr12 95504796 95505072 -48281383 + L1P LINE L1 3713 3996 -2150 682 323 142 40 chr12 95505320 95506053 -48280402 - L2 LINE L2 -5 3308 2501 1317 233 82 34 chr12 95506053 95506431 -48280024 + MSTD LTR MaLR 1 396 0 682 323 142 40 chr12 95506431 95506447 -48280008 - L2 LINE L2 -812 2501 2488 2581 187 22 15 chr12 95506533 95506929 -48279526 + L1MA8 LINE L1 4017 4421 -1725 1990 128 0 7 chr12 95506929 95507248 -48279207 + AluSc SINE Alu 3 319 0 2581 187 22 15 chr12 95507248 95507395 -48279060 + L1MA8 LINE L1 4421 4565 -1581 298 158 18 18 chr12 95507395 95507452 -48279003 - MSTD LTR MaLR 0 457 401 64 62 0 0 chr12 95507453 95507566 -48278889 + AT_rich Low_complexity Low_complexity 1 113 0 1363 219 95 20 chr12 95507576 95507882 -48278573 - MSTD LTR MaLR -67 329 1 5183 179 40 10 chr12 95507882 95509062 -48277393 + L1MA8 LINE L1 4561 5805 -486 1912 170 28 6 chr12 95509062 95509420 -48277035 + MER47A DNA MER2_type 1 366 0 5183 179 40 10 chr12 95509420 95509910 -48276545 + L1MA8 LINE L1 5805 6279 -12 548 293 89 26 chr12 95510459 95510729 -48275726 + L2 LINE L2 3027 3313 0 274 305 53 70 chr12 95510831 95511141 -48275314 - L2 LINE L2 -194 3078 2776 264 402 0 16 chr12 95511143 95511270 -48275185 - L2 LINE L2 -502 2812 2688 341 22 22 0 chr12 95512736 95512782 -48273673 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 24 32 0 0 chr12 95515371 95515402 -48271053 + AT_rich Low_complexity Low_complexity 1 31 0 236 309 48 0 chr12 95515698 95515782 -48270673 + MIR3 SINE MIR 119 206 -2 267 264 245 19 chr12 95516220 95516379 -48270076 + MIR SINE MIR 53 247 -15 189 0 0 0 chr12 95517682 95517703 -48268752 + (A)n Simple_repeat Simple_repeat 1 21 0 1564 147 109 4 chr12 95517881 95518332 -48268123 + AluSx SINE Alu 1 479 0 207 259 0 0 chr12 95518332 95518390 -48268065 + GA-rich Low_complexity Low_complexity 1 58 0 2078 120 3 0 chr12 95518711 95519002 -48267453 - AluSg SINE Alu -16 294 3 24 0 0 0 chr12 95520009 95520033 -48266422 + AT_rich Low_complexity Low_complexity 1 24 0 247 333 59 32 chr12 95524148 95524334 -48262121 - MIR SINE MIR -6 256 66 332 48 0 0 chr12 95524689 95524731 -48261724 - L1PA8 LINE L1 -224 5948 5907 1241 139 0 0 chr12 95524731 95524936 -48261519 + L1PA8 LINE L1 5964 6172 0 335 304 14 0 chr12 95525199 95525337 -48261118 - L1ME4a LINE L1 -239 5882 5743 25 0 0 0 chr12 95526139 95526164 -48260291 + AT_rich Low_complexity Low_complexity 1 25 0 306 356 53 21 chr12 95526342 95526530 -48259925 + L2 LINE L2 2782 2975 -339 1347 233 63 26 chr12 95526537 95526966 -48259489 - Charlie1 DNA MER1_type -1 2760 2316 863 298 40 0 chr12 95527009 95527281 -48259174 + Charlie1 DNA MER1_type 114 396 -2365 428 250 78 0 chr12 95527295 95527423 -48259032 - Charlie1 DNA MER1_type -413 2348 2211 604 217 183 0 chr12 95527424 95527599 -48258856 - Charlie1 DNA MER1_type -798 1963 1757 * 3350 233 106 53 chr12 95527582 95528276 -48258179 - Charlie1 DNA MER1_type -1480 1281 494 2083 123 13 0 chr12 95528276 95528578 -48257877 - AluSx SINE Alu -6 306 1 3350 233 106 53 chr12 95528578 95529100 -48257355 - Charlie1 DNA MER1_type -2267 494 1 223 293 183 66 chr12 95529128 95529401 -48257054 + L2 LINE L2 3004 3308 -5 23 33 0 0 chr12 95529724 95529754 -48256701 + AT_rich Low_complexity Low_complexity 1 30 0 621 271 69 16 chr12 95530283 95530471 -48255984 + MIR SINE MIR 65 262 0 376 289 54 64 chr12 95530540 95530744 -48255711 + MIR SINE MIR 35 236 -26 43 71 0 0 chr12 95530783 95530868 -48255587 + AT_rich Low_complexity Low_complexity 1 85 0 227 342 50 0 chr12 95531223 95531343 -48255112 - L2 LINE L2 -627 2687 2562 2161 207 166 29 chr12 95531381 95532073 -48254382 - LTR48 LTR ERV1 0 787 1 1329 89 0 26 chr12 95532165 95532355 -48254100 - L1PA8 LINE L1 -1 6171 5987 293 95 0 0 chr12 95532355 95532397 -48254058 + L1PA8 LINE L1 5950 5991 -163 279 54 0 0 chr12 95532440 95532477 -48253978 + (TG)n Simple_repeat Simple_repeat 2 38 0 2119 176 67 7 chr12 95533202 95533606 -48252849 + MSTA LTR MaLR 1 428 0 2184 117 0 7 chr12 95533969 95534276 -48252179 - AluSq SINE Alu -6 307 3 228 224 90 0 chr12 95534757 95534824 -48251631 - L3 LINE CR1 -302 1275 1203 212 411 54 8 chr12 95535068 95535197 -48251258 - MER5A DNA MER1_type 0 189 55 414 91 0 192 chr12 95535724 95535823 -48250632 + MADE1 DNA Mariner 1 80 0 2047 147 27 19 chr12 95536284 95536652 -48249803 + THE1C LTR MaLR 5 375 0 1991 213 40 44 chr12 95536746 95537248 -48249207 - MLT1D LTR MaLR 0 505 6 195 212 106 82 chr12 95538557 95538642 -48247813 - MIR SINE MIR -71 191 105 256 266 79 109 chr12 95538838 95539067 -48247388 + L2 LINE L2 3092 3313 0 21 71 0 0 chr12 95539671 95539713 -48246742 + AT_rich Low_complexity Low_complexity 1 42 0 233 143 0 0 chr12 95539725 95539760 -48246695 + L1ME LINE L1 5602 5636 -485 25 0 0 0 chr12 95539892 95539917 -48246538 + AT_rich Low_complexity Low_complexity 1 25 0 674 149 36 12 chr12 95540976 95541144 -48245311 + CT-rich Low_complexity Low_complexity 1 172 0 * 813 109 17 23 chr12 95541118 95541293 -48245162 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 367 308 119 54 chr12 95541771 95542125 -48244330 - L2 LINE L2 -2 3311 2935 367 332 88 38 chr12 95542102 95542442 -48244013 - L2 LINE L2 -461 2853 2497 262 152 0 0 chr12 95542756 95542802 -48243653 - L2 LINE L2 -1 3312 3267 461 330 110 18 chr12 95544463 95544736 -48241719 + MLT1J2 LTR MaLR 101 398 -52 306 294 84 8 chr12 95545448 95545567 -48240888 - L1ME1 LINE L1 -53 6113 5986 1610 228 50 28 chr12 95545568 95546025 -48240430 - L1ME1 LINE L1 -350 5816 5350 4441 99 37 6 chr12 95546040 95546715 -48239740 - L1MA1 LINE L1 -3 6299 5604 2750 264 78 13 chr12 95546848 95548002 -48238453 - L1ME1 LINE L1 -879 5267 4039 2587 170 38 2 chr12 95548168 95548639 -48237816 - L1PB4 LINE L1 -5 6151 5664 2951 241 22 3 chr12 95548639 95549361 -48237094 + L1PA15-16 LINE L1 2095 2830 -4019 247 219 14 82 chr12 95550763 95550836 -48235619 + L2 LINE L2 3246 3313 0 183 185 37 37 chr12 95551016 95551070 -48235385 + MER5C DNA MER1_type 88 141 -183 23 0 0 0 chr12 95551359 95551382 -48235073 + AT_rich Low_complexity Low_complexity 1 23 0 2183 300 108 11 chr12 95551630 95552630 -48233825 + L2 LINE L2 2212 3312 -1 1767 209 51 32 chr12 95553875 95554310 -48232145 + MLT1C LTR MaLR 8 450 -17 342 217 121 0 chr12 95554396 95554479 -48231976 + MER5A DNA MER1_type 7 99 -90 518 311 17 6 chr12 95554556 95554736 -48231719 - MIR SINE MIR -18 244 63 348 214 0 82 chr12 95554783 95554881 -48231574 + L1MC4 LINE L1 6614 6703 -1339 21 0 0 0 chr12 95555918 95555939 -48230516 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 95556529 95556558 -48229897 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr12 95557309 95557336 -48229119 + AT_rich Low_complexity Low_complexity 1 27 0 1991 139 10 0 chr12 95557343 95557645 -48228810 - AluSx SINE Alu -7 305 1 1366 298 129 24 chr12 95557656 95558559 -48227896 + L2 LINE L2 2335 3313 0 2412 67 0 0 chr12 95559065 95559364 -48227091 - AluY SINE Alu -12 299 1 2255 99 0 19 chr12 95559429 95559741 -48226714 + AluSg SINE Alu 3 308 -2 4223 241 65 21 chr12 95560056 95561437 -48225018 + L1M4 LINE L1 3601 5042 -1104 4861 93 13 9 chr12 95561527 95562216 -48224239 + L1PA8A LINE L1 5437 6128 -3 363 281 31 0 chr12 95562216 95562312 -48224143 + L1MC4 LINE L1 6920 7018 -1024 244 333 50 25 chr12 95562882 95563002 -48223453 + L2 LINE L2 2932 3054 -218 191 259 89 89 chr12 95563145 95563303 -48223152 - L2 LINE L2 -4 3309 3152 21 0 0 0 chr12 95563318 95563339 -48223116 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr12 95564901 95564935 -48221520 + AT_rich Low_complexity Low_complexity 1 34 0 215 333 76 21 chr12 95565271 95565415 -48221040 - MIR SINE MIR -13 249 98 180 111 0 0 chr12 95565671 95565698 -48220757 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 409 314 34 39 chr12 95565731 95565938 -48220517 - MIR SINE MIR -10 252 47 537 356 46 13 chr12 95566135 95566374 -48220081 + MIR SINE MIR 13 259 -3 342 0 0 0 chr12 95566607 95566645 -48219810 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 226 336 91 0 chr12 95567234 95567344 -48219111 + L2 LINE L2 3192 3311 -2 441 328 154 5 chr12 95567367 95567562 -48218893 - MIR SINE MIR -25 237 14 2472 48 0 0 chr12 95568625 95568919 -48217536 - AluY SINE Alu -17 294 1 1964 133 7 0 chr12 95569671 95569964 -48216491 + AluSx SINE Alu 1 295 -17 280 265 12 12 chr12 95570018 95570101 -48216354 + (TA)n Simple_repeat Simple_repeat 2 84 0 242 340 43 3 chr12 95570231 95570454 -48216001 - L1MC/D LINE L1 -620 5558 5346 190 277 0 0 chr12 95571416 95571463 -48214992 - MIR SINE MIR -12 250 204 736 256 74 22 chr12 95571495 95571725 -48214730 + MIR SINE MIR 21 262 0 21 0 0 0 chr12 95571747 95571768 -48214687 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr12 95572408 95572465 -48213990 + AT_rich Low_complexity Low_complexity 1 57 0 2272 88 0 3 chr12 95572935 95573230 -48213225 - AluSc SINE Alu -15 294 1 651 326 102 34 chr12 95573655 95574128 -48212327 - L3 LINE CR1 -124 1453 949 369 348 21 21 chr12 95574301 95574442 -48212013 + LTR33 LTR ERVL 32 172 -349 403 205 90 16 chr12 95574500 95574622 -48211833 + LTR33 LTR ERVL 389 519 -2 2412 14 0 0 chr12 95575091 95575368 -48211087 + L1HS LINE L1 5876 6152 -3 219 69 0 0 chr12 95575392 95575421 -48211034 + (A)n Simple_repeat Simple_repeat 1 29 0 189 74 0 0 chr12 95575443 95575470 -48210985 + (A)n Simple_repeat Simple_repeat 1 27 0 339 367 25 0 chr12 95576792 95576912 -48209543 - L2 LINE L2 -1 3271 3149 23 0 0 0 chr12 95577104 95577127 -48209328 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr12 95577901 95577965 -48208490 + AT_rich Low_complexity Low_complexity 1 64 0 181 372 35 12 chr12 95578038 95578124 -48208331 - MIR SINE MIR -105 103 16 191 238 0 0 chr12 95578286 95578328 -48208127 - MIR3 SINE MIR -16 192 151 342 61 0 0 chr12 95578442 95578491 -48207964 + (CA)n Simple_repeat Simple_repeat 2 50 0 364 343 52 37 chr12 95578685 95578819 -48207636 - MIR3 SINE MIR -52 156 21 1980 116 33 7 chr12 95578820 95579122 -48207333 - AluY SINE Alu -1 310 1 1625 156 64 10 chr12 95580106 95580401 -48206054 + AluJo SINE Alu 1 311 -1 472 185 97 19 chr12 95580423 95580638 -48205817 + L1MC5 LINE L1 7539 7861 -100 2604 42 0 3 chr12 95580773 95581081 -48205374 + AluY SINE Alu 1 307 -4 23 54 0 0 chr12 95581901 95581938 -48204517 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr12 95582189 95582224 -48204231 + AT_rich Low_complexity Low_complexity 1 35 0 605 266 145 67 chr12 95582356 95582908 -48203547 + MLT1G1 LTR MaLR 1 595 0 184 250 23 80 chr12 95585247 95585335 -48201120 - L3b LINE CR1 -267 1316 1234 287 303 139 8 chr12 95585617 95585739 -48200716 - MIR SINE MIR -114 148 11 24 77 0 0 chr12 95587151 95587203 -48199252 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr12 95587266 95587296 -48199159 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr12 95587495 95587515 -48198940 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 331 39 0 chr12 95587992 95588122 -48198333 + L2 LINE L2 3178 3312 -1 237 108 0 0 chr12 95589126 95589163 -48197292 + (GA)n Simple_repeat Simple_repeat 2 38 0 415 346 31 9 chr12 95589965 95590193 -48196262 + L2 LINE L2 2526 2758 -556 207 279 201 17 chr12 95590445 95590624 -48195831 + L2 LINE L2 3079 3290 -23 675 108 34 27 chr12 95591274 95591422 -48195033 + GA-rich Low_complexity Low_complexity 2 150 0 198 193 0 0 chr12 95592125 95592182 -48194273 + (TG)n Simple_repeat Simple_repeat 1 57 0 22 35 0 0 chr12 95592785 95592814 -48193641 + AT_rich Low_complexity Low_complexity 1 29 0 212 327 67 10 chr12 95595211 95595315 -48191140 + L2 LINE L2 3203 3312 -1 245 278 0 28 chr12 95595435 95595507 -48190948 + GA-rich Low_complexity Low_complexity 2 71 0 624 286 12 23 chr12 95595567 95595787 -48190668 + MIR SINE MIR 45 262 0 463 274 99 55 chr12 95595776 95595977 -48190478 - MIR SINE MIR -50 212 3 * 201 271 125 31 chr12 95596254 95596350 -48190105 - MIR SINE MIR -63 145 41 552 268 13 26 chr12 95597000 95597153 -48189302 + MIR SINE MIR 88 238 -24 21 36 0 0 chr12 95597610 95597638 -48188817 + AT_rich Low_complexity Low_complexity 1 28 0 191 413 84 19 chr12 95598016 95598229 -48188226 - L2 LINE L2 -179 3093 2867 219 317 117 25 chr12 95598514 95598634 -48187821 - L2 LINE L2 -577 2737 2607 416 256 307 0 chr12 95599599 95599775 -48186680 + MIR SINE MIR 3 232 -30 1050 211 41 23 chr12 95600984 95601250 -48185205 - L1MB4 LINE L1 -1 6179 5909 2426 62 0 3 chr12 95601957 95602263 -48184192 + AluY SINE Alu 1 305 -6 488 261 18 0 chr12 95602464 95602575 -48183880 + L2 LINE L2 3191 3303 -10 2116 183 42 40 chr12 95603413 95603840 -48182615 + MSTA LTR MaLR 1 428 0 3393 155 53 20 chr12 95603922 95604613 -48181842 + L1MA7 LINE L1 5572 6285 -6 23 54 0 0 chr12 95605283 95605320 -48181135 + AT_rich Low_complexity Low_complexity 1 37 0 4154 218 112 74 chr12 95605376 95606429 -48180026 - L1MCa LINE L1 -3059 3367 2355 468 0 0 0 chr12 95606429 95606481 -48179974 + (TA)n Simple_repeat Simple_repeat 2 53 0 4154 218 112 74 chr12 95606481 95607020 -48179435 - L1MCa LINE L1 -4071 2355 1838 2082 134 49 0 chr12 95607020 95607364 -48179091 - THE1B LTR MaLR -3 361 1 4154 218 112 74 chr12 95607364 95608996 -48177459 - L1MCa LINE L1 -4588 1838 21 3256 190 16 4 chr12 95609135 95609707 -48176748 - L1MB1 LINE L1 -4 6164 5600 436 128 26 0 chr12 95609707 95609785 -48176670 - MADE1 DNA Mariner 0 80 1 3256 190 16 4 chr12 95609785 95610522 -48175933 - L1MB1 LINE L1 -568 5600 4696 182 386 136 30 chr12 95610560 95610692 -48175763 + L2 LINE L2 2549 2694 -620 1964 128 7 33 chr12 95610721 95611026 -48175429 + AluSx SINE Alu 3 299 -13 812 229 19 29 chr12 95611300 95611505 -48174950 + MER3 DNA MER1_type 1 203 -6 292 353 50 29 chr12 95613579 95613718 -48172737 + MIR SINE MIR 37 178 -84 378 254 54 62 chr12 95613881 95614011 -48172444 + L2 LINE L2 3185 3313 0 225 258 48 0 chr12 95614119 95614181 -48172274 - Charlie8 DNA MER1_type -2145 272 208 29 0 0 0 chr12 95615131 95615160 -48171295 + AT_rich Low_complexity Low_complexity 1 29 0 311 87 0 0 chr12 95616157 95616203 -48170252 - MADE1 DNA Mariner -34 46 1 1551 201 103 48 chr12 95616814 95617291 -48169164 - MLT1D LTR MaLR -2 503 1 6945 63 10 0 chr12 95617754 95619435 -48167020 - L1PA7 LINE L1 -2 6152 4462 370 400 57 4 chr12 95620750 95620995 -48165460 + MIR SINE MIR 3 260 -2 398 297 83 75 chr12 95621026 95621104 -48165351 - LTR33 LTR ERVL -33 488 412 851 220 0 0 chr12 95621104 95621263 -48165192 + FRAM SINE Alu 1 159 -7 398 297 83 75 chr12 95621263 95621665 -48164790 - LTR33 LTR ERVL -109 412 4 22 35 0 0 chr12 95622506 95622535 -48163920 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 95622550 95622592 -48163863 + CT-rich Low_complexity Low_complexity 2 43 0 696 24 0 0 chr12 95623368 95623450 -48163005 + (TA)n Simple_repeat Simple_repeat 1 82 0 219 355 89 18 chr12 95623620 95623789 -48162666 + MIR3 SINE MIR 10 190 -18 2012 132 0 0 chr12 95623891 95624186 -48162269 - AluSc SINE Alu -14 295 1 4777 162 25 6 chr12 95624207 95625089 -48161366 - L1PB4 LINE L1 -4 6152 5254 271 98 0 0 chr12 95625097 95625138 -48161317 + L1PB4 LINE L1 5190 5230 -916 300 270 9 63 chr12 95625146 95625257 -48161198 - L1MC2 LINE L1 -24 6320 6216 2798 205 11 28 chr12 95625258 95625867 -48160588 - L1MC2 LINE L1 -242 6102 5504 428 311 145 9 chr12 95626504 95626732 -48159723 + MIR SINE MIR 3 261 -1 199 235 24 59 chr12 95626920 95627005 -48159450 + L2 LINE L2 3154 3235 -78 350 290 84 60 chr12 95627031 95627448 -48159007 - MLT1L LTR MaLR 0 588 190 526 278 0 0 chr12 95627812 95627927 -48158528 + L2 LINE L2 3195 3309 -4 230 304 78 52 chr12 95628209 95628400 -48158055 + L2 LINE L2 2658 2853 -461 318 87 0 0 chr12 95628410 95628456 -48157999 + (TTC)n Simple_repeat Simple_repeat 1 46 0 418 283 40 100 chr12 95628513 95628813 -48157642 + L2 LINE L2 2996 3277 -36 3039 28 0 0 chr12 95629470 95629827 -48156628 - L1PA4 LINE L1 -3 6152 5796 198 301 110 0 chr12 95630392 95630465 -48155990 - L2 LINE L2 -4 3268 3188 230 164 49 33 chr12 95630473 95630534 -48155921 + MLT1F LTR MaLR 481 542 -25 306 89 22 0 chr12 95630780 95630825 -48155630 + MLT1F LTR MaLR 494 539 -3 269 339 27 55 chr12 95630920 95631103 -48155352 + MIR SINE MIR 28 205 -57 274 282 49 70 chr12 95631124 95631266 -48155189 - L2 LINE L2 -592 2722 2584 325 366 138 36 chr12 95631316 95631679 -48154776 - L3 LINE CR1 -262 1315 916 293 218 141 0 chr12 95632094 95632172 -48154283 - L2 LINE L2 0 3272 3184 30 27 0 0 chr12 95632467 95632504 -48153951 + AT_rich Low_complexity Low_complexity 1 37 0 331 202 151 17 chr12 95632944 95633063 -48153392 + L1MC5 LINE L1 7792 7926 -35 405 309 62 34 chr12 95634462 95634640 -48151815 - L2 LINE L2 -1 3312 3130 270 333 93 13 chr12 95634647 95634797 -48151658 + MIR SINE MIR 57 218 -44 240 218 0 0 chr12 95635519 95635574 -48150881 + T-rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr12 95637303 95637334 -48149121 + AT_rich Low_complexity Low_complexity 1 31 0 199 339 65 0 chr12 95637486 95637548 -48148907 - L2 LINE L2 0 3313 3248 186 133 0 0 chr12 95640325 95640355 -48146100 + (A)n Simple_repeat Simple_repeat 1 30 0 647 216 0 0 chr12 95640993 95641118 -48145337 - MER94 DNA DNA -9 125 1 433 266 82 59 chr12 95642921 95643002 -48143453 + L1ME4a LINE L1 5717 5795 -326 407 110 37 12 chr12 95643002 95643084 -48143371 + L1PA13 LINE L1 6078 6161 -2 433 266 82 59 chr12 95643084 95643112 -48143343 + L1ME4a LINE L1 5795 5821 -300 22934 41 0 0 chr12 95643112 95646721 -48139734 + L1PA4 LINE L1 2546 6153 -2 433 266 82 59 chr12 95646721 95647001 -48139454 + L1ME4a LINE L1 5821 6116 -5 343 316 123 0 chr12 95647803 95647917 -48138538 - L2 LINE L2 -2 3270 3143 1552 156 197 8 chr12 95648166 95648526 -48137929 - MSTA LTR MaLR 0 428 1 496 266 79 30 chr12 95648641 95648844 -48137611 - MIR SINE MIR -6 256 44 234 167 0 37 chr12 95648851 95648905 -48137550 + T-rich Low_complexity Low_complexity 3 54 0 265 240 23 76 chr12 95648929 95649100 -48137355 - L1P5 LINE L1 -688 5433 5275 * 6664 82 6 0 chr12 95649071 95649982 -48136473 - L1PA8 LINE L1 0 6172 5257 243 61 0 0 chr12 95650169 95650202 -48136253 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 21 0 0 0 chr12 95650304 95650325 -48136130 + AT_rich Low_complexity Low_complexity 1 21 0 443 209 71 171 chr12 95652260 95652499 -48133956 - MER58 DNA MER1_type 0 2420 1 222 105 0 0 chr12 95652588 95652626 -48133829 + (A)n Simple_repeat Simple_repeat 1 38 0 232 391 71 18 chr12 95652767 95652992 -48133463 - L3b LINE CR1 -245 1338 1102 12428 111 16 49 chr12 95653324 95655958 -48130497 + L1P3 LINE L1 4 2650 -3811 590 249 131 0 chr12 95655960 95656181 -48130274 + L1M4 LINE L1 4477 4726 -1420 3208 72 5 0 chr12 95656181 95656600 -48129855 + L1PA7 LINE L1 5729 6149 -5 27 29 0 0 chr12 95656645 95656679 -48129776 + AT_rich Low_complexity Low_complexity 1 34 0 6109 246 86 18 chr12 95656679 95659994 -48126461 - L1MD2 LINE L1 -298 6061 2513 28 29 0 0 chr12 95660482 95660517 -48125938 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr12 95660525 95660545 -48125910 + (T)n Simple_repeat Simple_repeat 1 20 0 3840 171 87 3 chr12 95661876 95662647 -48123808 - L1MB1 LINE L1 -1 6167 5332 210 358 32 11 chr12 95663276 95663371 -48123084 - MIR SINE MIR -60 148 52 1716 199 27 3 chr12 95663833 95664169 -48122286 - MER2 DNA MER2_type -1 344 1 812 259 98 82 chr12 95664179 95665133 -48121322 - Charlie2 DNA MER1_type -119 2743 1774 794 246 41 75 chr12 95665342 95665853 -48120602 - L1ME LINE L1 -552 5614 5127 2089 229 31 10 chr12 95665854 95666370 -48120085 + L1ME1 LINE L1 5622 6148 -18 267 267 236 22 chr12 95666518 95666743 -48119712 - Charlie2 DNA MER1_type -2329 533 261 746 225 7 7 chr12 95667274 95667425 -48119030 - LTR32 LTR ERVL -4 467 317 1947 182 27 0 chr12 95667480 95667809 -48118646 - LTR32 LTR ERVL -119 352 15 833 227 0 0 chr12 95668657 95668807 -48117648 - MER5A DNA MER1_type -39 150 1 434 322 42 14 chr12 95668807 95668950 -48117505 - MIR3 SINE MIR -48 160 14 502 306 98 14 chr12 95670165 95670512 -48115943 - LTR16B LTR ERVL 0 464 67 582 368 37 21 chr12 95670670 95671102 -48115353 - HERV16 LTR ERVL -405 5359 4921 2467 155 33 0 chr12 95671113 95671658 -48114797 + L1MA4A LINE L1 5657 6280 -23 913 342 79 29 chr12 95671660 95672644 -48113811 - HERV16 LTR ERVL -653 4832 3855 * 2375 336 50 24 chr12 95672631 95674330 -48112125 - HERV16 LTR ERVL -1577 3544 1953 262 343 9 9 chr12 95674872 95674980 -48111475 - MER91C DNA MER1_type -31 109 2 226 133 0 33 chr12 95675212 95675272 -48111183 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 2135 85 64 3 chr12 95676271 95676566 -48109889 - AluSp SINE Alu 0 313 1 216 196 0 22 chr12 95676912 95676958 -48109497 + GA-rich Low_complexity Low_complexity 4 48 0 273 320 86 23 chr12 95677710 95677838 -48108617 + L2 LINE L2 2190 2325 -989 335 43 0 0 chr12 95677838 95677884 -48108571 + MADE1 DNA Mariner 1 46 -34 545 314 50 89 chr12 95678030 95678696 -48107759 + L2 LINE L2 2585 3263 -9 757 279 110 71 chr12 95679560 95679998 -48106457 + LTR67 LTR ERVL 97 551 -6 481 56 42 0 chr12 95681954 95682026 -48104429 + L1PA8 LINE L1 6097 6171 -1 784 338 67 50 chr12 95682344 95683120 -48103335 - L2 LINE L2 -243 3070 2283 253 271 94 0 chr12 95684851 95684936 -48101519 + MIR SINE MIR 59 151 -57 224 250 0 87 chr12 95685822 95685914 -48100541 - MIR SINE MIR -54 208 125 737 251 42 94 chr12 95688108 95688415 -48098040 + L2 LINE L2 261 551 -2763 1281 132 16 80 chr12 95688416 95688493 -48097962 + L1MA4A LINE L1 6038 6118 -185 375 41 0 0 chr12 95688493 95688542 -48097913 + (TG)n Simple_repeat Simple_repeat 2 50 0 1281 132 16 80 chr12 95688542 95688553 -48097902 + L1MA4A LINE L1 6118 6128 -175 2502 58 0 0 chr12 95688553 95688848 -48097607 - AluY SINE Alu -15 296 2 1281 132 16 80 chr12 95688848 95689009 -48097446 + L1MA4A LINE L1 6128 6272 -31 312 274 26 0 chr12 95689009 95689126 -48097329 + L2 LINE L2 685 804 -2510 * 893 290 87 46 chr12 95689125 95689539 -48096916 + L2 LINE L2 2879 3309 -4 24 0 0 0 chr12 95690491 95690515 -48095940 + AT_rich Low_complexity Low_complexity 1 24 0 191 323 15 83 chr12 95690586 95690719 -48095736 - L2 LINE L2 -221 3051 2928 211 276 20 41 chr12 95691019 95691117 -48095338 + CT-rich Low_complexity Low_complexity 2 97 0 389 374 20 14 chr12 95691144 95691291 -48095164 - L2 LINE L2 0 3272 3125 268 370 52 12 chr12 95691275 95691448 -48095007 - L2 LINE L2 -399 2915 2736 * 560 324 152 21 chr12 95691445 95691927 -48094528 + L2 LINE L2 1805 2349 -965 2294 75 0 41 chr12 95692470 95692790 -48093665 - AluY SINE Alu -4 307 1 1243 209 80 35 chr12 95692811 95693184 -48093271 - MLT1B LTR MaLR 0 390 1 850 272 159 14 chr12 95693264 95693842 -48092613 + L1M4 LINE L1 3592 4253 -1893 * 3031 14 11 0 chr12 95693833 95694182 -48092273 - L1PA3 LINE L1 -271 5884 5532 393 0 0 0 chr12 95694182 95694225 -48092230 + L1PA3 LINE L1 6106 6155 0 1144 249 108 18 chr12 95694226 95694788 -48091667 + L1M4 LINE L1 4233 4845 -1301 229 270 0 22 chr12 95694848 95694937 -48091518 + L1MC4 LINE L1 6614 6700 -1342 274 193 0 0 chr12 95694963 95695020 -48091435 + MLT2B1 LTR ERVL 464 520 0 30 0 0 0 chr12 95695031 95695061 -48091394 + AT_rich Low_complexity Low_complexity 1 30 0 288 247 25 0 chr12 95695153 95695234 -48091221 + L1ME3A LINE L1 6082 6164 -6 902 284 116 47 chr12 95695253 95695413 -48091042 + L1M4 LINE L1 4178 4326 -1820 1844 161 3 3 chr12 95695413 95695705 -48090750 + AluSx SINE Alu 3 294 -18 902 284 116 47 chr12 95695705 95696625 -48089830 + L1M4 LINE L1 4326 5332 -814 2819 35 6 6 chr12 95696640 95696988 -48089467 + L1PA2 LINE L1 5806 6153 -2 201 74 0 0 chr12 95697004 95697031 -48089424 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1164 156 0 0 chr12 95697121 95697301 -48089154 + L1M4 LINE L1 20 199 -6185 1994 239 30 41 chr12 95697303 95697961 -48088494 + L1M4 LINE L1 2491 3141 -3241 828 214 21 0 chr12 95697961 95698153 -48088302 + L1MA6 LINE L1 6095 6290 -10 1994 239 30 41 chr12 95698153 95698283 -48088172 + L1M4 LINE L1 3141 3271 -3111 1274 171 0 31 chr12 95698285 95698513 -48087942 + AluJb SINE Alu 49 269 -43 831 231 151 3 chr12 95698522 95698859 -48087596 + L1M4 LINE L1 3264 3650 -2732 283 130 0 19 chr12 95698865 95698919 -48087536 + L1M4 LINE L1 4085 4137 -2245 709 215 101 30 chr12 95699528 95699765 -48086690 + L1M1 LINE L1 3895 4148 -1998 283 275 28 107 chr12 95699778 95700069 -48086386 + L1ME3A LINE L1 5851 6118 -52 241 220 17 17 chr12 95700659 95700718 -48085737 + L1M1 LINE L1 5696 5754 -550 9559 198 22 7 chr12 95701773 95704892 -48081563 - L1PA15 LINE L1 -8 6157 2995 7229 230 25 41 chr12 95704896 95707838 -48078617 + L1M2 LINE L1 2 3287 -3561 3135 62 2 44 chr12 95707864 95708260 -48078195 - L1PA8 LINE L1 -14 6158 5782 2097 137 3 0 chr12 95708260 95708552 -48077903 - AluSc SINE Alu -16 293 1 3135 62 2 44 chr12 95708552 95708609 -48077846 - L1PA8 LINE L1 -390 5782 5724 1141 95 0 0 chr12 95708609 95708757 -48077698 - AluY SINE Alu -23 288 141 5939 87 4 1 chr12 95708757 95709988 -48076467 - L1P3 LINE L1 -441 5731 4499 15024 143 26 2 chr12 95709990 95713509 -48072946 + L1PA10 LINE L1 2579 6178 0 1981 243 7 16 chr12 95713530 95714089 -48072366 - L1P LINE L1 -3180 2966 2413 * 2902 215 10 2 chr12 95714088 95714825 -48071630 + L1P LINE L1 2366 3108 -3741 276 353 89 71 chr12 95715331 95715725 -48070730 + L2 LINE L2 2849 3249 -23 413 254 18 18 chr12 95716358 95716472 -48069983 + MER81 DNA DNA 1 114 0 4537 111 3 13 chr12 95716788 95717485 -48068970 + L1PA13 LINE L1 5474 6163 0 313 376 146 0 chr12 95718534 95718699 -48067756 - MER5A DNA MER1_type 0 189 1 1647 208 6 23 chr12 95718881 95719223 -48067232 - MLT1A1 LTR MaLR -29 336 1 251 349 12 0 chr12 95720990 95721073 -48065382 + MARNA DNA Mariner 130 213 -373 22 35 0 0 chr12 95721134 95721163 -48065292 + AT_rich Low_complexity Low_complexity 1 29 0 1122 184 0 0 chr12 95722085 95722281 -48064174 - L1PA13 LINE L1 -1130 5016 4821 5065 111 48 38 chr12 95722291 95723405 -48063050 + L1PA13 LINE L1 5024 6146 -17 384 307 31 6 chr12 95723532 95723706 -48062749 + MIR SINE MIR 45 222 -40 998 309 142 23 chr12 95723937 95724665 -48061790 - L2 LINE L2 -560 2754 1941 227 277 0 0 chr12 95724678 95724725 -48061730 + L2 LINE L2 3210 3256 -16 685 254 0 58 chr12 95724762 95724882 -48061573 + MIR SINE MIR 12 121 -141 1906 142 3 39 chr12 95724882 95725193 -48061262 - AluSx SINE Alu -12 300 1 685 254 0 58 chr12 95725193 95725245 -48061210 + MIR SINE MIR 121 174 -88 4984 174 24 33 chr12 95725459 95726420 -48060035 - L1MA7 LINE L1 -4 6287 5336 1317 219 41 41 chr12 95726420 95726785 -48059670 - MLT1A1 LTR MaLR 0 365 1 4984 174 24 33 chr12 95726785 95727191 -48059264 - L1MA7 LINE L1 -955 5336 4928 331 341 22 54 chr12 95727225 95727448 -48059007 - LTR33 LTR ERVL -11 510 295 327 335 43 31 chr12 95727514 95727675 -48058780 - LTR33 LTR ERVL -339 182 20 26 50 0 0 chr12 95728344 95728384 -48058071 + AT_rich Low_complexity Low_complexity 1 40 0 298 262 0 36 chr12 95730141 95730225 -48056230 - MIR SINE MIR -59 149 72 1300 129 51 28 chr12 95730453 95730708 -48055747 - L1MA7 LINE L1 -310 5981 5721 453 36 0 0 chr12 95730740 95730795 -48055660 + (C)n Simple_repeat Simple_repeat 1 55 0 1844 161 3 3 chr12 95731221 95731513 -48054942 - AluSx SINE Alu -18 294 3 23 54 0 0 chr12 95731515 95731552 -48054903 + AT_rich Low_complexity Low_complexity 1 37 0 312 235 25 0 chr12 95731692 95731773 -48054682 - L1ME3A LINE L1 -6 6164 6082 30 0 0 0 chr12 95731865 95731895 -48054560 + AT_rich Low_complexity Low_complexity 1 30 0 298 175 0 0 chr12 95731906 95731963 -48054492 - MLT2B1 LTR ERVL 0 520 464 204 40 0 0 chr12 95731989 95732014 -48054441 + (TA)n Simple_repeat Simple_repeat 2 26 0 283 214 24 48 chr12 95732015 95732099 -48054356 + L1MC4 LINE L1 6615 6696 -1346 198 0 0 0 chr12 95732099 95732121 -48054334 + (TG)n Simple_repeat Simple_repeat 1 22 0 271 217 33 0 chr12 95733240 95733300 -48053155 + L1MA6 LINE L1 6158 6219 -81 1000 141 50 0 chr12 95733303 95733501 -48052954 + L1MA6 LINE L1 6093 6300 0 188 111 28 0 chr12 95733569 95733605 -48052850 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3605 54 0 0 chr12 95733749 95734196 -48052259 + L1PA6 LINE L1 5708 6154 0 236 149 21 0 chr12 95734735 95734782 -48051673 + (TA)n Simple_repeat Simple_repeat 2 49 0 1884 120 43 10 chr12 95735249 95735549 -48050906 - AluSx SINE Alu -2 310 1 206 253 0 66 chr12 95735554 95735632 -48050823 + MIR SINE MIR 81 133 -75 941 197 19 38 chr12 95736117 95736160 -48050295 + MER3 DNA MER1_type 1 43 -166 12653 131 48 71 chr12 95736160 95738013 -48048442 - Tigger1 DNA MER2_type 0 2418 633 1899 155 3 3 chr12 95738013 95738304 -48048151 - AluSx SINE Alu -21 291 1 12653 131 48 71 chr12 95738304 95738924 -48047531 - Tigger1 DNA MER2_type -1785 633 1 941 197 19 38 chr12 95738924 95739093 -48047362 + MER3 DNA MER1_type 43 209 0 335 223 13 55 chr12 95739317 95739426 -48047029 + MIR3 SINE MIR 79 183 -25 26 0 0 0 chr12 95740134 95740160 -48046295 + AT_rich Low_complexity Low_complexity 1 26 0 2180 106 3 10 chr12 95742419 95742722 -48043733 - AluSx SINE Alu -11 301 1 267 173 0 0 chr12 95742972 95743024 -48043431 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr12 95743183 95743205 -48043250 + AT_rich Low_complexity Low_complexity 1 22 0 36 53 0 0 chr12 95743247 95743304 -48043151 + AT_rich Low_complexity Low_complexity 1 57 0 317 109 18 0 chr12 95743638 95743693 -48042762 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 418 188 59 10 chr12 95744045 95744146 -48042309 + MER69 DNA AcHobo 2420 2525 -1 202 340 19 19 chr12 95744235 95744338 -48042117 - MER5A DNA MER1_type 0 189 87 303 49 0 0 chr12 95744360 95744401 -48042054 + (TG)n Simple_repeat Simple_repeat 2 42 0 28 107 0 0 chr12 95745569 95745681 -48040774 + AT_rich Low_complexity Low_complexity 1 112 0 348 283 139 48 chr12 95746379 95746566 -48039889 + MIR SINE MIR 47 250 -12 2330 209 98 21 chr12 95747210 95747862 -48038593 + L1MC4a LINE L1 7013 7714 -94 367 176 27 0 chr12 95747869 95747943 -48038512 + L1MC4 LINE L1 7833 7908 -134 201 265 20 0 chr12 95748014 95748063 -48038392 + GA-rich Low_complexity Low_complexity 2 51 0 543 168 8 61 chr12 95748064 95748195 -48038260 + L1MC4 LINE L1 7919 8042 0 244 273 0 15 chr12 95748197 95748263 -48038192 + GA-rich Low_complexity Low_complexity 3 67 0 1896 158 82 15 chr12 95748366 95748707 -48037748 - THE1B LTR MaLR 0 364 1 275 292 14 0 chr12 95748817 95748889 -48037566 + L2 LINE L2 3229 3301 -12 3264 252 94 35 chr12 95749737 95749865 -48036590 - L1ME1 LINE L1 -6 6172 6053 735 81 0 0 chr12 95749865 95749964 -48036491 + L1PA11 LINE L1 6075 6173 -1 3264 252 94 35 chr12 95749964 95752093 -48034362 - L1ME1 LINE L1 -125 6053 3782 440 239 98 55 chr12 95752106 95752269 -48034186 + L1M4 LINE L1 3657 3826 -2320 574 206 54 22 chr12 95752608 95752768 -48033687 + MLT1A2 LTR MaLR 238 374 0 599 347 43 18 chr12 95753581 95753858 -48032597 - L2 LINE L2 -163 3150 2867 1995 142 26 42 chr12 95754889 95755270 -48031185 - THE1C LTR MaLR 0 375 1 272 376 4 30 chr12 95757601 95757823 -48028632 - MIR SINE MIR -46 216 3 307 290 210 0 chr12 95759846 95760008 -48026447 - MIR SINE MIR -44 218 23 1780 212 16 48 chr12 95761926 95762426 -48024029 - MER31A LTR ERV1 0 485 2 25 0 0 0 chr12 95762881 95762906 -48023549 + AT_rich Low_complexity Low_complexity 1 25 0 433 193 44 72 chr12 95763666 95763847 -48022608 - MER53 DNA DNA 0 189 14 323 301 155 18 chr12 95764106 95764332 -48022123 - MLT1L LTR MaLR -10 605 349 702 222 0 32 chr12 95764928 95765048 -48021407 + L1M4 LINE L1 4747 4860 -1286 2647 153 7 2 chr12 95765048 95765474 -48020981 + MSTA LTR MaLR 1 428 0 702 222 0 32 chr12 95765474 95765538 -48020917 + L1M4 LINE L1 4860 4925 -1221 629 245 16 40 chr12 95765536 95765785 -48020670 + L1M4 LINE L1 5160 5402 -744 * 426 173 49 0 chr12 95765790 95765871 -48020584 - MLT1A1 LTR MaLR 0 365 281 2046 128 4 0 chr12 95765999 95766318 -48020137 + AluSx SINE Alu 2 321 0 28 29 0 0 chr12 95766331 95766366 -48020089 + AT_rich Low_complexity Low_complexity 1 35 0 535 220 47 40 chr12 95766520 95766692 -48019763 - MLT1A1 LTR MaLR -91 283 110 190 283 94 66 chr12 95766692 95766798 -48019657 + L2 LINE L2 3205 3313 0 * 586 287 20 0 chr12 95766796 95766946 -48019509 - MIR SINE MIR -109 153 1 21 0 0 0 chr12 95767183 95767204 -48019251 + AT_rich Low_complexity Low_complexity 1 21 0 2960 116 7 0 chr12 95767307 95767740 -48018715 - L1PA13 LINE L1 -2 6161 5726 353 279 68 14 chr12 95768255 95768402 -48018053 + MIR SINE MIR 95 249 -13 189 375 0 12 chr12 95768423 95768503 -48017952 + L2 LINE L2 3235 3313 0 28 71 0 0 chr12 95769368 95769424 -48017031 + AT_rich Low_complexity Low_complexity 1 56 0 718 237 47 28 chr12 95770931 95771146 -48015309 + MLT1H LTR MaLR 1 219 -330 1164 50 0 0 chr12 95771177 95771318 -48015137 + L1PA7 LINE L1 6003 6143 -11 649 263 80 89 chr12 95772686 95773124 -48013331 - MLT1J LTR MaLR -63 448 15 643 268 8 33 chr12 95773689 95773903 -48012552 - L1PA12 LINE L1 -6223 1361 44 402 340 7 21 chr12 95774631 95774772 -48011683 + L2 LINE L2 3134 3272 0 532 299 87 17 chr12 95774911 95775142 -48011313 + MIR SINE MIR 4 250 -12 246 176 0 0 chr12 95775553 95775604 -48010851 + T-rich Low_complexity Low_complexity 1 51 0 1828 196 20 45 chr12 95775902 95776002 -48010453 - MLT1B LTR MaLR 0 390 289 3801 89 12 25 chr12 95776002 95776563 -48009892 - MER41A LTR ERV1 0 554 1 1828 196 20 45 chr12 95776563 95776860 -48009595 - MLT1B LTR MaLR -101 289 3 284 233 43 95 chr12 95776943 95777059 -48009396 + L2 LINE L2 3173 3282 -31 189 196 65 22 chr12 95777119 95777165 -48009290 + L2 LINE L2 3262 3309 -4 463 354 36 18 chr12 95777450 95777673 -48008782 + MER115 DNA AcHobo 40 266 -427 417 304 10 9 chr12 95777954 95778083 -48008372 + MIR SINE MIR 33 163 -45 1782 162 0 24 chr12 95778785 95779082 -48007373 - AluJb SINE Alu -22 290 1 21 36 0 0 chr12 95779800 95779828 -48006627 + AT_rich Low_complexity Low_complexity 1 28 0 1022 229 82 50 chr12 95780018 95780455 -48006000 + LTR16A1 LTR ERVL 5 455 -2 746 176 0 15 chr12 95781321 95781452 -48005003 - FLAM_C SINE Alu -12 131 3 1902 90 24 52 chr12 95782404 95782694 -48003761 - AluSx SINE Alu -30 282 1 293 348 18 0 chr12 95782890 95783002 -48003453 + MIR SINE MIR 32 145 -63 270 0 0 0 chr12 95783031 95783061 -48003394 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 723 291 116 54 chr12 95783487 95783951 -48002504 - LTR33 LTR ERVL -4 517 25 2186 123 0 0 chr12 95784303 95784605 -48001850 - AluSx SINE Alu -10 302 1 884 127 6 66 chr12 95785586 95785728 -48000727 + MLT1B LTR MaLR 1 132 -258 1083 226 29 27 chr12 95785728 95785938 -48000517 - MLT1A1 LTR MaLR 0 365 157 220 36 0 0 chr12 95785938 95785966 -48000489 + (TTTG)n Simple_repeat Simple_repeat 1 152 0 2225 96 0 0 chr12 95785966 95786247 -48000208 - AluSq SINE Alu -31 282 2 1083 226 29 27 chr12 95786247 95786359 -48000096 - MLT1A1 LTR MaLR -207 158 9 1762 138 10 20 chr12 95786431 95786964 -47999491 + MER4A LTR ERV1 1 664 0 358 298 48 32 chr12 95787803 95787927 -47998528 - L2 LINE L2 -13 3300 3175 588 233 21 69 chr12 95787961 95788150 -47998305 + MER5A DNA MER1_type 1 180 -9 262 346 12 74 chr12 95788018 95788153 -47998302 - MER5A DNA MER1_type -37 152 27 * 1897 176 0 0 chr12 95788153 95788455 -47998000 - AluJb SINE Alu -10 302 1 262 346 12 74 chr12 95788455 95788481 -47997974 - MER5A DNA MER1_type -162 27 1 194 318 80 34 chr12 95788557 95788733 -47997722 - L2 LINE L2 -219 3053 2870 1608 200 39 25 chr12 95789026 95789386 -47997069 - MLT1A1 LTR MaLR 0 365 1 1339 153 11 65 chr12 95789387 95789662 -47996793 + MLT1B LTR MaLR 131 390 0 22 0 0 0 chr12 95796458 95796480 -47989975 + AT_rich Low_complexity Low_complexity 1 22 0 209 301 38 60 chr12 95797282 95797415 -47989040 + L3 LINE CR1 1435 1564 -13 988 54 78 0 chr12 95797523 95797652 -47988803 - MER85 DNA T2_type 0 139 1 392 264 32 8 chr12 95798669 95798794 -47987661 - MER94 DNA DNA 0 134 7 407 262 30 18 chr12 95799206 95799374 -47987081 - MER117 DNA MER1_type -8 189 20 198 331 158 24 chr12 95799409 95799536 -47986919 - L2 LINE L2 -40 3232 3089 21 0 0 0 chr12 95799940 95799961 -47986494 + AT_rich Low_complexity Low_complexity 1 21 0 564 275 157 0 chr12 95801331 95801509 -47984946 - MIR SINE MIR -45 217 12 383 278 9 17 chr12 95801814 95801929 -47984526 + MER81 DNA DNA 1 114 0 21 36 0 0 chr12 95802932 95802960 -47983495 + AT_rich Low_complexity Low_complexity 1 28 0 1359 192 113 6 chr12 95803201 95803519 -47982936 - MLT1A1 LTR MaLR -2 363 12 233 297 40 0 chr12 95803619 95803693 -47982762 - MLT1I LTR MaLR -127 282 206 3112 109 14 6 chr12 95803788 95804282 -47982173 - L1MA3 LINE L1 -5 6300 5803 8516 175 14 7 chr12 95804282 95806012 -47980443 - L1MA3 LINE L1 -880 5266 3525 814 337 84 6 chr12 95806156 95806655 -47979800 - HERV16 LTR ERVL -1003 4651 4114 478 343 41 46 chr12 95806868 95807025 -47979430 - HERV16 LTR ERVL -1558 3927 3771 2406 166 31 0 chr12 95807025 95807440 -47979015 + MSTA LTR MaLR 1 428 0 478 343 41 46 chr12 95807440 95807908 -47978547 - HERV16 LTR ERVL -1714 3771 3276 300 161 0 0 chr12 95807911 95807967 -47978488 + MSTA LTR MaLR 1 56 -372 7217 124 6 10 chr12 95807969 95809304 -47977151 + MSTA-int LTR MaLR 191 1580 0 1760 156 82 23 chr12 95809306 95809658 -47976797 + THE1C LTR MaLR 3 375 0 540 314 69 27 chr12 95809778 95810314 -47976141 - HERV16 LTR ERVL -2503 3151 2582 924 214 56 26 chr12 95810954 95811188 -47975267 - MSTD LTR MaLR 0 396 156 1209 228 51 62 chr12 95811219 95811688 -47974767 - MER101 LTR ERV1 0 474 11 614 179 8 17 chr12 95811678 95811795 -47974660 - MSTD LTR MaLR -280 116 1 * 537 307 47 40 chr12 95811797 95812097 -47974358 - HERV16 LTR ERVL -4071 925 624 471 370 32 0 chr12 95812430 95812679 -47973776 - HERV16 LTR ERVL -4702 294 38 596 319 35 29 chr12 95812730 95813078 -47973377 - LTR16B LTR ERVL -17 447 98 422 313 80 6 chr12 95815087 95815250 -47971205 + MIR SINE MIR 75 249 -13 33 0 0 0 chr12 95815455 95815488 -47970967 + AT_rich Low_complexity Low_complexity 1 33 0 191 304 65 43 chr12 95816018 95816110 -47970345 + L2 LINE L2 3149 3242 -30 1108 232 93 117 chr12 95816851 95817611 -47968844 - L1M4 LINE L1 -765 5381 4640 434 236 7 42 chr12 95817617 95817761 -47968694 - L1M4 LINE L1 -2486 3660 3522 918 311 99 29 chr12 95817775 95818390 -47968065 + HERV16 LTR ERVL 915 1572 -3424 2944 334 57 20 chr12 95818440 95819328 -47967127 + HERV16 LTR ERVL 1687 2702 -2505 2431 174 12 9 chr12 95819328 95819759 -47966696 - MSTB1 LTR MaLR 0 432 1 2944 334 57 20 chr12 95819759 95820389 -47966066 + HERV16 LTR ERVL 2702 3307 -1900 1402 237 135 7 chr12 95820550 95820964 -47965491 + MLT1E LTR MaLR 127 593 0 593 351 22 35 chr12 95820978 95821516 -47964939 + HERV16 LTR ERVL 3327 3857 -1907 203 86 0 29 chr12 95821538 95821573 -47964882 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1560 137 67 50 chr12 95821575 95821875 -47964580 - AluSc SINE Alu -4 305 1 414 299 46 42 chr12 95821875 95822159 -47964296 + HERV16 LTR ERVL 3547 3831 -1165 26 64 0 0 chr12 95822696 95822743 -47963712 + AT_rich Low_complexity Low_complexity 1 47 0 1643 158 36 11 chr12 95823096 95823399 -47963056 - AluSx SINE Alu 0 310 1 772 141 81 0 chr12 95823616 95823765 -47962690 - L1MA4 LINE L1 -6 6294 6134 23 0 0 0 chr12 95823813 95823836 -47962619 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 95824117 95824145 -47962310 + AT_rich Low_complexity Low_complexity 1 28 0 326 219 68 0 chr12 95824145 95824218 -47962237 - MER2 DNA MER2_type -1 344 267 986 162 46 5 chr12 95824251 95824448 -47962007 - MER2 DNA MER2_type -139 206 2 589 275 78 30 chr12 95825058 95825353 -47961102 + MER110 LTR ERV1 166 474 -17 311 284 0 0 chr12 95825646 95825720 -47960735 + MIR SINE MIR 79 152 -110 550 298 65 16 chr12 95825869 95826114 -47960341 + MER110 LTR ERV1 48 304 -187 23 92 0 0 chr12 95826218 95826283 -47960172 + AT_rich Low_complexity Low_complexity 1 65 0 243 323 47 8 chr12 95826315 95826442 -47960013 + MER110 LTR ERV1 360 491 0 565 262 0 0 chr12 95826442 95826564 -47959891 - MIR SINE MIR -37 225 104 915 256 33 0 chr12 95827038 95827249 -47959206 - MER58A DNA MER1_type 0 224 7 22 0 0 0 chr12 95828694 95828716 -47957739 + AT_rich Low_complexity Low_complexity 1 22 0 1293 186 64 27 chr12 95829317 95829645 -47956810 + MLT2C1 LTR ERVL 1 340 -57 315 49 0 0 chr12 95829766 95829807 -47956648 + (TG)n Simple_repeat Simple_repeat 2 42 0 343 330 103 31 chr12 95829876 95830137 -47956318 + L2 LINE L2 3031 3310 -3 328 380 105 0 chr12 95830156 95830327 -47956128 - MIR SINE MIR -72 190 2 2352 76 0 0 chr12 95830867 95831157 -47955298 - AluY SINE Alu -21 290 1 284 283 79 26 chr12 95831217 95831369 -47955086 - LTR16B LTR ERVL 0 464 305 207 245 0 0 chr12 95831985 95832034 -47954421 - MIR SINE MIR -101 161 113 315 345 9 9 chr12 95832525 95832635 -47953820 - L2 LINE L2 -1 3271 3162 207 69 0 0 chr12 95832805 95832834 -47953621 + (CA)n Simple_repeat Simple_repeat 2 30 0 210 345 144 14 chr12 95833020 95833159 -47953296 + L2 LINE L2 2926 3082 -190 2391 106 0 0 chr12 95833965 95834277 -47952178 + AluSx SINE Alu 1 312 0 521 230 39 17 chr12 95834301 95834479 -47951976 + L1M4 LINE L1 4623 4804 -1342 315 348 63 36 chr12 95835966 95836187 -47950268 - L2 LINE L2 -214 3058 2832 837 208 141 70 chr12 95837367 95837600 -47948855 + MER46C DNA MER2_type 3 265 -73 1594 192 25 3 chr12 95837600 95837886 -47948569 - AluJb SINE Alu -20 292 1 837 208 141 70 chr12 95837886 95837965 -47948490 + MER46C DNA MER2_type 265 337 -1 221 160 0 20 chr12 95839181 95839231 -47947224 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 36 0 0 chr12 95842707 95842735 -47943720 + AT_rich Low_complexity Low_complexity 1 28 0 337 289 72 82 chr12 95843411 95843619 -47942836 - MIR SINE MIR -9 253 48 195 42 0 0 chr12 95843623 95843647 -47942808 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 666 311 74 50 chr12 95844357 95844695 -47941760 + MLT1I LTR MaLR 63 408 -1 255 324 29 19 chr12 95845225 95845330 -47941125 - MIR SINE MIR -101 161 56 24 53 0 0 chr12 95846209 95846247 -47940208 + AT_rich Low_complexity Low_complexity 1 38 0 1423 97 5 10 chr12 95846623 95846819 -47939636 + AluSx SINE Alu 5 199 -113 426 85 0 0 chr12 95847686 95847745 -47938710 + (CA)n Simple_repeat Simple_repeat 2 60 0 189 356 135 26 chr12 95847887 95848303 -47938152 - L2 LINE L2 0 3313 2853 234 327 75 28 chr12 95848934 95849041 -47937414 + MIR3 SINE MIR 89 200 -8 2206 113 3 0 chr12 95849237 95849546 -47936909 + AluSq SINE Alu 1 310 -3 1295 263 48 111 chr12 95849552 95850302 -47936153 + MER21B LTR ERV1 6 708 -155 1071 65 0 0 chr12 95851590 95851728 -47934727 - AluY SINE Alu -13 298 161 2547 186 73 2 chr12 95851836 95852284 -47934171 + MLT2B1 LTR ERVL 1 487 -33 609 52 0 0 chr12 95852284 95852361 -47934094 + (CA)n Simple_repeat Simple_repeat 2 78 0 2547 186 73 2 chr12 95852361 95852391 -47934064 + MLT2B1 LTR ERVL 487 513 -7 356 350 85 23 chr12 95852630 95852890 -47933565 - MLT1J LTR MaLR -234 277 2 622 191 176 32 chr12 95852971 95853159 -47933296 + MER20 DNA MER1_type 4 218 -1 294 73 0 0 chr12 95853338 95853379 -47933076 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1942 104 3 52 chr12 95853379 95853668 -47932787 - AluSq SINE Alu -32 281 7 2194 130 8 8 chr12 95853932 95854286 -47932169 + L1PA15 LINE L1 5812 6165 0 209 304 14 0 chr12 95855287 95855356 -47931099 + CT-rich Low_complexity Low_complexity 1 70 0 236 313 0 0 chr12 95855586 95855653 -47930802 + (CAT)n Simple_repeat Simple_repeat 3 69 0 443 319 22 7 chr12 95855721 95855859 -47930596 + MIR SINE MIR 120 259 -3 398 241 19 37 chr12 95855886 95855994 -47930461 - MIR SINE MIR -138 124 19 1001 265 52 18 chr12 95856690 95857090 -47929365 - HsTC2 DNA Tc2 0 1898 1485 4606 180 33 14 chr12 95857095 95858393 -47928062 + L1MA9 LINE L1 4334 5655 -657 2740 141 50 22 chr12 95858403 95858801 -47927654 + L1MA9 LINE L1 5752 6171 -141 302 0 26 0 chr12 95858801 95858839 -47927616 + (CA)n Simple_repeat Simple_repeat 2 40 0 2740 141 50 22 chr12 95858839 95858986 -47927469 + L1MA9 LINE L1 6171 6312 0 2471 258 50 42 chr12 95859017 95859124 -47927331 + L1ME1 LINE L1 3067 3172 -2994 521 208 8 32 chr12 95859124 95859249 -47927206 + FLAM_C SINE Alu 3 124 -9 2471 258 50 42 chr12 95859249 95860145 -47926310 + L1ME1 LINE L1 3172 4059 -2107 2341 30 0 0 chr12 95860145 95860440 -47926015 + AluY SINE Alu 19 313 0 2471 258 50 42 chr12 95860440 95862405 -47924050 + L1ME1 LINE L1 4059 6157 -9 318 294 48 16 chr12 95862506 95862693 -47923762 + L1ME LINE L1 5563 5755 -366 564 168 92 37 chr12 95864225 95864374 -47922081 + MIR SINE MIR 98 255 -7 192 352 128 22 chr12 95864380 95864607 -47921848 + L2 LINE L2 2809 3059 -213 7134 41 23 2 chr12 95864634 95865509 -47920946 - L1PA5 LINE L1 -8 6146 5254 2236 106 29 32 chr12 95865578 95865954 -47920501 - THE1C LTR MaLR 0 375 1 279 235 12 59 chr12 95865985 95866070 -47920385 + L2 LINE L2 3177 3257 -15 23 33 0 0 chr12 95866214 95866244 -47920211 + AT_rich Low_complexity Low_complexity 1 30 0 237 291 0 0 chr12 95866247 95866302 -47920153 + MER5A DNA MER1_type 59 113 -76 25 75 0 0 chr12 95867357 95867410 -47919045 + AT_rich Low_complexity Low_complexity 1 53 0 264 100 0 0 chr12 95867506 95867546 -47918909 + (TG)n Simple_repeat Simple_repeat 1 40 0 27 0 0 0 chr12 95868396 95868423 -47918032 + AT_rich Low_complexity Low_complexity 1 27 0 192 261 0 0 chr12 95868604 95868669 -47917786 + C-rich Low_complexity Low_complexity 5 69 0 314 292 8 75 chr12 95868690 95868765 -47917690 - MIR3 SINE MIR -20 188 122 1760 54 5 14 chr12 95868765 95868988 -47917467 + AluY SINE Alu 85 305 -6 314 292 8 75 chr12 95868988 95869032 -47917423 - MIR3 SINE MIR -86 122 77 207 236 90 34 chr12 95869197 95869286 -47917169 + MIR SINE MIR 56 149 -113 22 56 0 0 chr12 95872085 95872121 -47914334 + AT_rich Low_complexity Low_complexity 1 36 0 312 249 164 21 chr12 95872651 95872840 -47913615 - L1ME4a LINE L1 -42 6079 5864 472 61 30 0 chr12 95873666 95873732 -47912723 - L1PA7 LINE L1 -1796 4350 4283 7053 92 12 2 chr12 95873732 95875519 -47910936 + L1PA7 LINE L1 4358 6154 0 349 271 90 23 chr12 95875700 95875877 -47910578 - L1MDa LINE L1 -4785 1295 1107 686 145 0 24 chr12 95876041 95876165 -47910290 + L1MA6 LINE L1 5779 5899 -401 324 254 111 64 chr12 95876177 95876457 -47909998 - L1MDa LINE L1 -5099 971 679 447 380 62 36 chr12 95876747 95877250 -47909205 - L1MDa LINE L1 -5543 527 12 347 269 30 8 chr12 95877277 95877411 -47909044 + L1ME LINE L1 5653 5789 -332 399 227 82 36 chr12 95877423 95877533 -47908922 - L2 LINE L2 -2048 1266 1152 7844 159 25 30 chr12 95877578 95877685 -47908770 + L1MA8 LINE L1 3836 3942 -2349 1681 187 3 13 chr12 95877685 95877995 -47908460 + AluJb SINE Alu 1 307 -5 7844 159 25 30 chr12 95877995 95880349 -47906106 + L1MA8 LINE L1 3942 6288 -3 1862 106 32 7 chr12 95880493 95880777 -47905678 - L1PA15 LINE L1 -2 6163 5873 2532 135 69 44 chr12 95880798 95880885 -47905570 - L1PA15 LINE L1 -382 5783 5700 243 88 0 0 chr12 95880885 95880919 -47905536 + (TG)n Simple_repeat Simple_repeat 2 35 0 1895 101 0 4 chr12 95880919 95881176 -47905279 + AluSg SINE Alu 37 292 -18 2532 135 69 44 chr12 95881176 95881645 -47904810 - L1PA15 LINE L1 -464 5701 5200 570 239 52 85 chr12 95881946 95882218 -47904237 - LTR67 LTR ERVL -63 494 232 22 0 0 0 chr12 95882622 95882644 -47903811 + AT_rich Low_complexity Low_complexity 1 22 0 735 85 0 0 chr12 95883659 95883765 -47902690 - AluY SINE Alu -1 310 205 958 309 103 8 chr12 95883806 95884794 -47901661 - L1ME LINE L1 -659 5505 4423 1137 276 88 9 chr12 95884857 95885331 -47901124 - L1ME3A LINE L1 -12 6158 5650 * 1356 267 36 23 chr12 95885316 95886076 -47900379 - L1ME LINE L1 -421 5724 4953 432 280 132 24 chr12 95886223 95886387 -47900068 - L1ME LINE L1 -5063 1056 854 3060 73 0 0 chr12 95886387 95886785 -47899670 + L1PA8 LINE L1 5775 6172 0 432 280 132 24 chr12 95886785 95886870 -47899585 - L1ME LINE L1 -5265 854 780 186 196 22 0 chr12 95886865 95886911 -47899544 + CT-rich Low_complexity Low_complexity 2 180 0 * 584 262 0 0 chr12 95886911 95887038 -47899417 - FLAM_C SINE Alu 0 177 5 336 307 121 36 chr12 95889507 95889647 -47896808 + L2 LINE L2 3153 3304 -9 300 367 84 9 chr12 95891055 95891270 -47895185 - MIR SINE MIR -31 231 1 183 162 0 0 chr12 95891398 95891435 -47895020 + (GAATG)n Simple_repeat Simple_repeat 3 39 0 222 355 29 29 chr12 95891936 95892074 -47894381 + L2 LINE L2 2720 2857 -457 201 254 51 17 chr12 95892136 95892195 -47894260 - L2 LINE L2 -61 3211 3151 192 208 57 19 chr12 95893279 95893332 -47893123 + L2 LINE L2 3255 3309 -4 21 0 0 0 chr12 95894959 95894980 -47891475 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 95895132 95895153 -47891302 + AT_rich Low_complexity Low_complexity 1 21 0 180 325 24 24 chr12 95895191 95895274 -47891181 - MIR3 SINE MIR -1 207 125 2602 116 82 54 chr12 95896179 95896644 -47889811 - LTR12 LTR ERV1 -236 478 1 1032 193 94 88 chr12 95897191 95897554 -47888901 - MLT1A1 LTR MaLR 0 365 1 311 375 84 25 chr12 95897633 95897990 -47888465 + L1ME LINE L1 4903 5280 -866 268 323 24 8 chr12 95898066 95898193 -47888262 + L1ME LINE L1 5353 5481 -683 518 329 53 22 chr12 95898204 95898432 -47888023 - MLT1I LTR MaLR -6 403 169 254 297 118 50 chr12 95898608 95898931 -47887524 + L1ME LINE L1 5537 5881 -285 24 32 0 0 chr12 95900294 95900325 -47886130 + AT_rich Low_complexity Low_complexity 1 31 0 2024 69 0 7 chr12 95900372 95900646 -47885809 + L1PA7 LINE L1 5883 6154 0 24 53 0 0 chr12 95901397 95901435 -47885020 + AT_rich Low_complexity Low_complexity 1 38 0 2611 98 22 0 chr12 95901561 95901928 -47884527 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr12 95901941 95901963 -47884492 + AT_rich Low_complexity Low_complexity 1 22 0 2183 105 16 0 chr12 95901969 95902274 -47884181 + AluY SINE Alu 1 310 -1 25 0 0 0 chr12 95902404 95902429 -47884026 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr12 95902536 95902571 -47883884 + AT_rich Low_complexity Low_complexity 1 35 0 464 391 64 23 chr12 95902615 95903004 -47883451 + L2 LINE L2 2837 3241 -31 30 0 0 0 chr12 95903389 95903419 -47883036 + AT_rich Low_complexity Low_complexity 1 30 0 256 319 69 31 chr12 95903845 95904005 -47882450 + MIR SINE MIR 8 173 -89 1414 189 82 30 chr12 95904026 95904354 -47882101 + MER2 DNA MER2_type 1 345 0 236 344 53 22 chr12 95905154 95905342 -47881113 + MIR SINE MIR 6 193 -67 354 235 114 8 chr12 95905495 95905627 -47880828 + MER103 DNA DNA 11 156 -10 2123 115 0 0 chr12 95906193 95906480 -47879975 + AluSc SINE Alu 1 287 -22 556 304 23 18 chr12 95906939 95907110 -47879345 - MIR3 SINE MIR -15 193 22 211 234 0 0 chr12 95908378 95908425 -47878030 + A-rich Low_complexity Low_complexity 1 47 0 446 227 0 0 chr12 95908504 95908579 -47877876 - MER58A DNA MER1_type -32 75 1 390 285 81 71 chr12 95909091 95909512 -47876943 + L1MEd LINE L1 511 935 -5184 347 246 134 29 chr12 95910092 95910263 -47876192 + L1MEd LINE L1 889 1077 -5042 344 275 94 84 chr12 95910695 95911004 -47875451 + L1MEd LINE L1 805 1116 -5003 2188 102 3 10 chr12 95911026 95911331 -47875124 + AluSg SINE Alu 1 303 -7 1356 112 0 29 chr12 95911422 95911628 -47874827 + AluSq SINE Alu 103 302 -11 1933 206 48 48 chr12 95911655 95911800 -47874655 + MLT1C LTR MaLR 5 149 -318 351 125 56 0 chr12 95911800 95911872 -47874583 + L1MA7 LINE L1 6216 6291 0 1933 206 48 48 chr12 95911872 95912188 -47874267 + MLT1C LTR MaLR 148 466 -1 252 239 0 0 chr12 95912215 95912282 -47874173 - MER116 DNA Mariner -8 72 6 225 356 91 0 chr12 95913101 95913233 -47873222 - L3b LINE CR1 -120 1463 1320 330 354 37 29 chr12 95914019 95914214 -47872241 - MIR SINE MIR -44 218 27 4179 134 56 56 chr12 95914708 95915534 -47870921 - LTR1B LTR ERV1 0 826 1 218 196 22 0 chr12 95915583 95915629 -47870826 + (TG)n Simple_repeat Simple_repeat 2 48 0 457 285 79 45 chr12 95915711 95916012 -47870443 + L1ME4a LINE L1 5539 5849 -272 25 65 0 0 chr12 95916160 95916206 -47870249 + AT_rich Low_complexity Low_complexity 1 46 0 191 382 29 10 chr12 95916591 95916693 -47869762 - MIR3 SINE MIR -45 163 60 21 36 0 0 chr12 95917132 95917160 -47869295 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 95917816 95917854 -47868601 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr12 95918172 95918211 -47868244 + AT_rich Low_complexity Low_complexity 1 39 0 335 313 117 17 chr12 95920288 95920518 -47865937 + MLT1J LTR MaLR 79 331 -180 27 73 0 0 chr12 95921695 95921750 -47864705 + AT_rich Low_complexity Low_complexity 1 55 0 307 266 64 0 chr12 95922023 95922117 -47864338 + MLT1J2 LTR MaLR 51 150 -300 324 102 0 0 chr12 95923969 95924018 -47862437 + (TG)n Simple_repeat Simple_repeat 2 50 0 340 88 50 12 chr12 95926859 95926939 -47859516 + GA-rich Low_complexity Low_complexity 2 84 0 180 200 0 0 chr12 95927460 95927500 -47858955 + GA-rich Low_complexity Low_complexity 2 41 0 23 0 0 0 chr12 95927752 95927775 -47858680 + AT_rich Low_complexity Low_complexity 1 23 0 484 264 135 57 chr12 95928182 95928375 -47858080 - MIR SINE MIR 0 262 55 418 219 42 0 chr12 95929137 95929233 -47857222 + MLT2E LTR ERVL 2 101 -527 530 273 7 35 chr12 95929459 95929790 -47856665 + MLT2E LTR ERVL 187 628 0 4410 152 15 7 chr12 95929812 95930969 -47855486 + L1PA16 LINE L1 4823 5986 -180 * 14125 42 9 10 chr12 95930968 95932771 -47853684 - L1PA5 LINE L1 -753 5393 3592 6008 49 0 34 chr12 95932771 95933088 -47853367 + L1PA5 LINE L1 5393 5719 -435 2413 63 0 19 chr12 95933088 95933404 -47853051 - AluY SINE Alu -1 310 1 6008 49 0 34 chr12 95933404 95933874 -47852581 + L1PA5 LINE L1 5719 6154 0 1111 146 22 0 chr12 95933886 95934071 -47852384 + L1PA16 LINE L1 5968 6156 -10 254 329 70 35 chr12 95934196 95934424 -47852031 + MLT1-int LTR MaLR 306 541 -830 351 159 80 80 chr12 95934655 95934743 -47851712 + MLT1H1 LTR MaLR 464 538 -17 408 247 267 7 chr12 95935045 95935191 -47851264 + MIR SINE MIR 79 262 0 528 356 7 0 chr12 95935699 95935848 -47850607 - L2 LINE L2 -2 3270 3121 409 351 127 40 chr12 95936066 95936619 -47849836 - L2 LINE L2 -449 2865 2265 249 350 58 10 chr12 95938140 95938243 -47848212 + MIR SINE MIR 79 186 -76 1450 173 121 4 chr12 95938315 95938587 -47847868 + AluSx SINE Alu 1 304 -8 21 71 0 0 chr12 95938703 95938745 -47847710 + AT_rich Low_complexity Low_complexity 1 42 0 521 347 21 0 chr12 95938874 95939064 -47847391 - MIR SINE MIR -55 207 14 491 237 0 17 chr12 95939681 95939799 -47846656 + MER33 DNA MER1_type 1 116 -208 29 0 0 0 chr12 95939811 95939840 -47846615 + AT_rich Low_complexity Low_complexity 1 29 0 1100 205 56 73 chr12 95939844 95940377 -47846078 - LTR48B LTR ERV1 -30 614 5 2949 219 68 27 chr12 95940407 95940729 -47845726 - L1ME1 LINE L1 -4 6162 5855 2043 170 11 16 chr12 95940729 95941106 -47845349 + THE1C LTR MaLR 1 375 0 2949 219 68 27 chr12 95941106 95941967 -47844488 - L1ME1 LINE L1 -311 5855 4936 229 26 26 26 chr12 95942274 95942313 -47844142 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 237 247 130 13 chr12 95942641 95942718 -47843737 - MIR3 SINE MIR -31 177 92 209 224 17 0 chr12 95945153 95945211 -47841244 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 264 262 36 0 chr12 95945241 95945409 -47841046 + (TA)n Simple_repeat Simple_repeat 2 175 0 2011 282 59 14 chr12 95945416 95946384 -47840071 - L1ME1 LINE L1 -2287 3859 2849 248 284 209 22 chr12 95946613 95946747 -47839708 + MIR3 SINE MIR 10 168 -40 958 270 113 46 chr12 95947746 95948249 -47838206 + L2 LINE L2 1751 2287 -1027 935 209 194 39 chr12 95948397 95948727 -47837728 + MLT1B LTR MaLR 4 384 -6 244 314 160 6 chr12 95948757 95948913 -47837542 + L2 LINE L2 3119 3298 -15 293 250 23 29 chr12 95949058 95949282 -47837173 + (TA)n Simple_repeat Simple_repeat 1 222 0 320 178 14 0 chr12 95949293 95949366 -47837089 + (TA)n Simple_repeat Simple_repeat 1 74 0 409 154 0 56 chr12 95949389 95949532 -47836923 + (TA)n Simple_repeat Simple_repeat 1 135 0 320 139 51 0 chr12 95949597 95949676 -47836779 + (TA)n Simple_repeat Simple_repeat 1 83 0 183 343 120 0 chr12 95949971 95950079 -47836376 + L2 LINE L2 3185 3305 -8 214 195 0 0 chr12 95950236 95950277 -47836178 + T-rich Low_complexity Low_complexity 1 41 0 238 306 153 31 chr12 95950738 95950836 -47835619 + MIR SINE MIR 58 167 -95 1070 194 51 145 chr12 95951409 95951858 -47834597 - MLT1E2 LTR MaLR -219 407 1 740 293 82 43 chr12 95951891 95952430 -47834025 + L1MC4a LINE L1 5407 5966 -1842 6156 95 21 3 chr12 95952881 95954538 -47831917 + L1PA13 LINE L1 4516 6161 -2 2724 131 12 12 chr12 95954712 95955140 -47831315 - MSTA LTR MaLR 0 428 1 3677 132 22 3 chr12 95955994 95956859 -47829596 + L1P5 LINE L1 4912 5791 -360 38 0 0 0 chr12 95957228 95957266 -47829189 + AT_rich Low_complexity Low_complexity 1 38 0 288 315 65 0 chr12 95957306 95957398 -47829057 - L2 LINE L2 -8 3305 3208 296 254 0 45 chr12 95957496 95957563 -47828892 + L2 LINE L2 3209 3272 0 219 243 40 0 chr12 95957963 95958037 -47828418 + (TA)n Simple_repeat Simple_repeat 2 78 0 277 384 89 7 chr12 95959497 95959643 -47826812 - L2 LINE L2 -5 3267 3110 2367 159 38 44 chr12 95960200 95960696 -47825759 + L1MC1 LINE L1 5841 6333 0 428 267 48 14 chr12 95962413 95962559 -47823896 - MLT1J1 LTR MaLR -291 155 5 632 320 79 51 chr12 95963502 95964056 -47822399 + L2 LINE L2 2737 3309 -4 434 248 35 7 chr12 95964256 95964397 -47822058 - L1MEc LINE L1 -4515 1881 1737 866 89 65 0 chr12 95964416 95964540 -47821915 - AluY SINE Alu -179 132 1 697 290 84 12 chr12 95964543 95964762 -47821693 - L1MEc LINE L1 -4655 1741 1539 240 35 0 0 chr12 95964762 95964791 -47821664 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 697 290 84 12 chr12 95964791 95964998 -47821457 - L1MEc LINE L1 -4857 1539 1284 755 191 24 24 chr12 95965054 95965263 -47821192 + L1MA4 LINE L1 6092 6300 0 1824 298 24 13 chr12 95965293 95965921 -47820534 - L1MEc LINE L1 -5648 748 114 373 261 56 42 chr12 95966508 95966650 -47819805 - ERVL LTR ERVL -1584 4180 4037 2162 110 0 3 chr12 95967270 95967561 -47818894 - AluSq SINE Alu -19 294 5 2324 73 10 3 chr12 95967593 95967907 -47818548 - L1PA7 LINE L1 0 6154 5839 1278 264 68 44 chr12 95969600 95970243 -47816212 - MLT1E3 LTR MaLR -1 623 1 25 31 0 0 chr12 95970925 95970957 -47815498 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr12 95970965 95970992 -47815463 + AT_rich Low_complexity Low_complexity 1 27 0 779 152 16 0 chr12 95971464 95971589 -47814866 + MER47A DNA MER2_type 2 128 -238 1026 160 6 0 chr12 95971589 95971758 -47814697 + L1PA12 LINE L1 52 221 -7360 297 366 0 0 chr12 95971874 95971956 -47814499 - L2 LINE L2 -31 3282 3201 228 319 66 11 chr12 95972173 95972264 -47814191 + L2 LINE L2 3172 3267 -5 22 0 0 0 chr12 95972393 95972415 -47814040 + AT_rich Low_complexity Low_complexity 1 22 0 340 348 105 19 chr12 95972655 95973139 -47813316 + L2 LINE L2 2532 3060 -212 402 162 27 0 chr12 95973685 95973759 -47812696 + MADE1 DNA Mariner 5 80 0 292 203 68 27 chr12 95973790 95973864 -47812591 - MIR SINE MIR -180 82 6 717 281 68 70 chr12 95973899 95974510 -47811945 - L2 LINE L2 -5 3308 2700 1734 146 45 3 chr12 95974699 95974986 -47811469 + AluSx SINE Alu 6 304 -8 25 31 0 0 chr12 95975018 95975050 -47811405 + AT_rich Low_complexity Low_complexity 1 32 0 621 318 54 21 chr12 95975548 95975790 -47810665 - MIR SINE MIR -1 261 12 590 321 50 29 chr12 95975950 95976190 -47810265 + MIR SINE MIR 15 259 -3 258 148 0 0 chr12 95976482 95976536 -47809919 + (TC)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr12 95976536 95976577 -47809878 + (TG)n Simple_repeat Simple_repeat 2 42 0 453 325 116 59 chr12 95976638 95977145 -47809310 + L3 LINE CR1 928 1463 -114 11559 168 12 0 chr12 95977245 95979036 -47807419 + L1PA12 LINE L1 193 2004 -5577 1793 253 105 33 chr12 95979034 95979848 -47806607 + L1PA13 LINE L1 339 1258 -5529 * 13179 186 64 13 chr12 95979851 95983083 -47803372 + L1PA13 LINE L1 1396 4802 -1995 1127 89 47 6 chr12 95983193 95983362 -47803093 + Tigger5 DNA MER2_type 2098 2273 -50 315 258 79 56 chr12 95983535 95983713 -47802742 + L1ME4a LINE L1 5839 6020 -101 1786 177 27 9 chr12 95983855 95984189 -47802266 - MER50 LTR ERV1 -23 711 372 3170 138 12 4 chr12 95984292 95984785 -47801670 + MER50 LTR ERV1 215 711 -23 1426 177 49 35 chr12 95985329 95985617 -47800838 + AluJo SINE Alu 1 292 -20 3167 83 4 33 chr12 95986313 95986770 -47799685 - MLT2A1 LTR ERVL 0 444 1 517 295 140 5 chr12 95986858 95987058 -47799397 - MIR SINE MIR 0 262 36 341 248 99 8 chr12 95987723 95987785 -47798670 - MIR SINE MIR -30 232 177 2396 83 0 0 chr12 95987785 95988085 -47798370 + AluSg SINE Alu 1 300 -10 341 248 99 8 chr12 95988085 95988143 -47798312 - MIR SINE MIR -85 177 101 432 284 46 24 chr12 95988325 95988527 -47797928 - MIR SINE MIR -51 211 10 470 224 12 12 chr12 95988929 95989099 -47797356 + GA-rich Low_complexity Low_complexity 1 170 0 207 133 0 0 chr12 95990523 95990568 -47795887 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chr12 95990681 95990713 -47795742 + AT_rich Low_complexity Low_complexity 1 32 0 1108 230 148 19 chr12 95991011 95991490 -47794965 - L1M4 LINE L1 -3463 2683 2143 2233 257 38 15 chr12 95991507 95992168 -47794287 - L1MC4a LINE L1 -1 7807 7132 662 307 78 16 chr12 95992282 95992601 -47793854 + MERVL LTR ERVL 3120 3458 -2027 703 381 0 3 chr12 95993101 95993413 -47793042 + MERVL LTR ERVL 4054 4364 -1400 1309 182 94 31 chr12 95993430 95993749 -47792706 - MLT1D LTR MaLR -9 496 158 232 305 0 39 chr12 95993846 95993974 -47792481 - L1MC4a LINE L1 -2276 5532 5410 22 0 0 0 chr12 95994027 95994049 -47792406 + AT_rich Low_complexity Low_complexity 1 22 0 213 121 0 0 chr12 95994399 95994432 -47792023 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 21 57 0 0 chr12 95994445 95994480 -47791975 + AT_rich Low_complexity Low_complexity 1 35 0 21374 132 13 84 chr12 95995607 95999429 -47787026 + L1P LINE L1 2 3481 -2665 228 35 0 0 chr12 95999429 95999458 -47786997 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21374 132 13 84 chr12 95999458 95999976 -47786479 + L1P LINE L1 3481 4034 -2112 279 173 19 0 chr12 95999976 96000028 -47786427 + Tigger5 DNA MER2_type 2271 2323 0 846 251 11 5 chr12 96000958 96001149 -47785306 - MIR SINE MIR -44 218 27 264 149 0 0 chr12 96001217 96001264 -47785191 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 2404 175 70 16 chr12 96001264 96001800 -47784655 - MER82 DNA MER2_type 0 653 21 225 108 0 0 chr12 96001813 96001850 -47784605 + (TA)n Simple_repeat Simple_repeat 2 38 0 245 29 0 29 chr12 96002951 96002986 -47783469 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 366 61 0 0 chr12 96004246 96004295 -47782160 + (CA)n Simple_repeat Simple_repeat 2 50 0 188 167 21 0 chr12 96004296 96004344 -47782111 + (CCA)n Simple_repeat Simple_repeat 2 50 0 409 354 55 6 chr12 96005477 96005658 -47780797 + MIR SINE MIR 45 234 -28 213 233 0 0 chr12 96005658 96005701 -47780754 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 306 311 23 124 chr12 96007008 96007105 -47779350 - L2 LINE L2 -1 3312 3207 2263 101 3 19 chr12 96007105 96007422 -47779033 + AluSx SINE Alu 1 312 0 306 311 23 124 chr12 96007422 96007547 -47778908 - L2 LINE L2 -106 3207 3136 435 62 0 16 chr12 96007547 96007639 -47778816 + L1PA7 LINE L1 6081 6171 0 306 311 23 124 chr12 96007639 96007768 -47778687 - L2 LINE L2 -177 3136 2995 201 282 204 19 chr12 96007823 96007926 -47778529 + MIR SINE MIR 61 182 -80 1685 228 34 30 chr12 96009164 96009602 -47776853 - L1ME2 LINE L1 -11 6153 5714 233 64 0 0 chr12 96009653 96009700 -47776755 - LTR66 LTR ERVL -171 439 393 602 243 203 0 chr12 96009731 96009953 -47776502 - L1ME2 LINE L1 -473 5691 5425 243 227 0 0 chr12 96011900 96011966 -47774489 + (CA)n Simple_repeat Simple_repeat 1 66 0 323 292 23 8 chr12 96012195 96012325 -47774130 + (TA)n Simple_repeat Simple_repeat 2 133 0 335 335 56 12 chr12 96012526 96012687 -47773768 + MLT1K LTR MaLR 91 258 -330 228 246 0 0 chr12 96012709 96012770 -47773685 + MLT1K LTR MaLR 365 425 -163 3526 144 73 20 chr12 96013499 96014212 -47772243 - Tigger3(Golem) DNA MER2_type -1 3028 2278 538 243 9 0 chr12 96014204 96014311 -47772144 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 215 213 0 0 chr12 96016137 96016184 -47770271 + (CA)n Simple_repeat Simple_repeat 1 47 0 27 49 0 0 chr12 96017349 96017390 -47769065 + AT_rich Low_complexity Low_complexity 1 41 0 2084 133 3 7 chr12 96017504 96017805 -47768650 + AluSq SINE Alu 1 300 -13 258 131 61 0 chr12 96017835 96017934 -47768521 + (TA)n Simple_repeat Simple_repeat 1 105 0 1243 282 91 22 chr12 96017997 96018544 -47767911 + L1ME3A LINE L1 5378 5977 -193 1761 176 0 23 chr12 96018544 96018851 -47767604 + AluJo SINE Alu 1 300 -12 1243 282 91 22 chr12 96018851 96018941 -47767514 + L1ME3A LINE L1 5977 6059 -111 282 271 81 97 chr12 96019193 96019451 -47767004 - L2 LINE L2 0 3272 3019 421 289 65 60 chr12 96020059 96020260 -47766195 - L2 LINE L2 -6 3307 3106 367 341 91 9 chr12 96020680 96020900 -47765555 + MIR SINE MIR 20 257 -5 26 88 0 0 chr12 96021507 96021575 -47764880 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr12 96021716 96021737 -47764718 + AT_rich Low_complexity Low_complexity 1 21 0 337 185 0 15 chr12 96022932 96022997 -47763458 - LTR67 LTR ERVL -3 554 491 1389 119 75 79 chr12 96023004 96023282 -47763173 + AluSq SINE Alu 1 277 -36 1016 282 123 55 chr12 96024384 96025404 -47761051 - L2 LINE L2 0 3313 2222 591 112 0 0 chr12 96025428 96025517 -47760938 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 221 143 0 0 chr12 96026222 96026257 -47760198 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 738 153 6 33 chr12 96026257 96026440 -47760015 + GA-rich Low_complexity Low_complexity 3 180 0 581 279 39 6 chr12 96027148 96027327 -47759128 + MIR SINE MIR 1 185 -77 1860 155 3 0 chr12 96027345 96027629 -47758826 - AluSx SINE Alu -27 285 1 21 0 0 0 chr12 96027657 96027678 -47758777 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 96027834 96027873 -47758582 + (CA)n Simple_repeat Simple_repeat 2 40 0 2804 178 38 31 chr12 96028744 96029300 -47757155 - MER68 LTR ERV1 0 562 3 355 357 55 22 chr12 96029735 96030007 -47756448 + L2 LINE L2 2444 2724 -590 432 284 26 138 chr12 96030133 96030327 -47756128 + L2 LINE L2 2932 3054 -259 306 106 0 0 chr12 96030327 96030374 -47756081 + (CA)n Simple_repeat Simple_repeat 1 47 0 432 284 26 138 chr12 96030374 96030605 -47755850 + L2 LINE L2 3054 3309 -4 2409 74 0 3 chr12 96031464 96031775 -47754680 + AluY SINE Alu 1 310 -1 1469 235 68 68 chr12 96031858 96032347 -47754108 + MER77 LTR ERV1 117 605 0 6187 151 22 11 chr12 96033061 96034197 -47752258 - L1MC1 LINE L1 -6 6327 5185 262 239 72 120 chr12 96035086 96035253 -47751202 + L2 LINE L2 3155 3313 0 617 278 66 21 chr12 96037228 96037469 -47748986 - MIR SINE MIR -2 260 9 2083 102 37 3 chr12 96037469 96037763 -47748692 - AluSx SINE Alu -8 304 1 649 272 6 6 chr12 96037963 96038121 -47748334 + MLT1I LTR MaLR 252 409 0 8466 59 3 1 chr12 96238188 96239284 -47547171 - L1P LINE L1 -1379 4767 3670 183 234 21 0 chr12 96240264 96240311 -47546144 + MIR SINE MIR 75 122 -140 458 192 176 8 chr12 96240794 96240919 -47545536 + MER5A DNA MER1_type 5 150 -39 1816 130 7 14 chr12 96240920 96241212 -47545243 + AluSc SINE Alu 1 290 -19 438 293 76 15 chr12 96241305 96241503 -47544952 - MIR SINE MIR -50 212 3 5847 111 25 6 chr12 96242235 96244010 -47542445 + L1PA11 LINE L1 4392 6174 0 675 250 65 75 chr12 96245138 96245583 -47540872 + MLT1H LTR MaLR 117 549 0 487 329 89 9 chr12 96245833 96246046 -47540409 - MIR SINE MIR -2 260 31 644 358 62 52 chr12 96246609 96247339 -47539116 + L2 LINE L2 2583 3296 -17 632 371 36 21 chr12 96247337 96247808 -47538647 - L2 LINE L2 -556 2758 2281 * 1846 140 7 21 chr12 96248250 96248561 -47537894 - AluSx SINE Alu 0 309 3 1271 252 49 106 chr12 96248956 96249580 -47536875 + HAL1 LINE L1 948 1503 -1004 1429 209 60 0 chr12 96249580 96249863 -47536592 + AluJo SINE Alu 3 302 0 1271 252 49 106 chr12 96249863 96250169 -47536286 + HAL1 LINE L1 1503 1825 -682 25 31 0 0 chr12 96250171 96250203 -47536252 + AT_rich Low_complexity Low_complexity 1 32 0 1794 231 77 90 chr12 96250362 96250662 -47535793 + MLT1E1 LTR MaLR 4 306 -348 1544 53 0 0 chr12 96250662 96250885 -47535570 + L1PA5 LINE L1 5948 6170 0 1794 231 77 90 chr12 96250885 96251219 -47535236 + MLT1E1 LTR MaLR 306 631 -23 687 286 91 5 chr12 96252029 96252249 -47534206 + L2 LINE L2 3075 3313 0 284 250 40 0 chr12 96252515 96252591 -47533864 + CT-rich Low_complexity Low_complexity 2 80 0 215 318 45 78 chr12 96252934 96253088 -47533367 - MIR3 SINE MIR -5 203 55 548 324 128 32 chr12 96253703 96254457 -47531998 + L2 LINE L2 2457 3283 -30 3411 128 57 28 chr12 96254795 96255428 -47531027 - L1MC1 LINE L1 -9 6324 5674 228 351 70 29 chr12 96255500 96255671 -47530784 + MIR SINE MIR 30 207 -55 28 29 0 0 chr12 96255781 96255816 -47530639 + AT_rich Low_complexity Low_complexity 1 35 0 645 264 130 9 chr12 96255866 96256082 -47530373 - MIR SINE MIR -2 260 19 22 56 0 0 chr12 96256088 96256124 -47530331 + AT_rich Low_complexity Low_complexity 1 36 0 234 0 0 0 chr12 96257244 96257270 -47529185 + (TA)n Simple_repeat Simple_repeat 2 27 0 369 307 22 22 chr12 96257626 96257763 -47528692 - MER5A DNA MER1_type -3 186 50 256 350 68 34 chr12 96257873 96258050 -47528405 - MIR SINE MIR -74 188 6 305 111 0 0 chr12 96258276 96258321 -47528134 + MADE1 DNA Mariner 5 49 -31 337 321 22 22 chr12 96258714 96258851 -47527604 - MER5A DNA MER1_type -3 186 50 256 350 68 34 chr12 96258962 96259139 -47527316 - MIR SINE MIR -74 188 6 369 96 0 0 chr12 96259362 96259414 -47527041 + MADE1 DNA Mariner 2 53 -27 842 266 11 35 chr12 96259428 96259710 -47526745 + MLT1E3 LTR MaLR 350 624 0 375 293 14 70 chr12 96259710 96259925 -47526530 - L2 LINE L2 -27 3286 3084 853 173 82 39 chr12 96261715 96261923 -47524532 - MER20 DNA MER1_type -1 218 2 2556 180 20 14 chr12 96261994 96262489 -47523966 + MER34 LTR ERV1 45 542 0 568 267 40 34 chr12 96262498 96262674 -47523781 - MIR SINE MIR -47 215 39 221 353 122 0 chr12 96263177 96263316 -47523139 + MIR3 SINE MIR 49 204 -4 1584 226 70 64 chr12 96264519 96264836 -47521619 - MLT1D LTR MaLR -2 503 189 468 89 0 38 chr12 96264836 96264915 -47521540 + L1PA8 LINE L1 6097 6172 0 1584 226 70 64 chr12 96264915 96264934 -47521521 - MLT1D LTR MaLR -316 189 172 1881 122 13 40 chr12 96264934 96265276 -47521179 + AluSq SINE Alu 1 313 0 1584 226 70 64 chr12 96265276 96265438 -47521017 - MLT1D LTR MaLR -333 172 1 290 299 142 16 chr12 96265859 96265986 -47520469 - MIR SINE MIR -2 260 118 2364 109 0 0 chr12 96266134 96266446 -47520009 + AluSx SINE Alu 1 312 0 327 304 95 7 chr12 96266739 96266887 -47519568 + MIR SINE MIR 20 180 -82 479 299 142 5 chr12 96268086 96268290 -47518165 - MIR SINE MIR -6 256 25 2401 132 11 11 chr12 96268350 96268730 -47517725 + Tigger2a DNA MER2_type 1 380 -54 1585 310 70 15 chr12 96270522 96271457 -47514998 + L2 LINE L2 2323 3313 0 196 351 23 30 chr12 96271820 96271951 -47514504 + MIR SINE MIR 124 253 -9 2696 201 134 143 chr12 96272102 96272732 -47513723 + L1MD3 LINE L1 6692 7326 -669 397 254 70 9 chr12 96272732 96272846 -47513609 + MLT1F1 LTR MaLR 1 121 -446 2696 201 134 143 chr12 96272846 96273386 -47513069 + L1MD3 LINE L1 7326 7963 -32 22 56 0 0 chr12 96273453 96273489 -47512966 + AT_rich Low_complexity Low_complexity 1 36 0 2153 249 40 17 chr12 96273657 96274180 -47512275 + MLT1F LTR MaLR 8 542 0 204 300 62 12 chr12 96274706 96274786 -47511669 + MIR SINE MIR 64 147 -115 867 199 32 59 chr12 96276746 96276967 -47509488 + MER58B DNA MER1_type 123 337 -4 22 0 0 0 chr12 96277349 96277371 -47509084 + AT_rich Low_complexity Low_complexity 1 22 0 925 299 108 26 chr12 96277884 96278493 -47507962 - L2 LINE L2 0 3313 2635 261 283 81 110 chr12 96278608 96278781 -47507674 + MLT1H1 LTR MaLR 64 231 -324 249 214 29 0 chr12 96278959 96279029 -47507426 + MLT1G LTR MaLR 512 583 -7 267 359 14 14 chr12 96279257 96279402 -47507053 + MLT1-int LTR MaLR 397 541 -830 2908 175 24 6 chr12 96280658 96281206 -47505249 - L1MC2 LINE L1 -308 6036 5479 1827 241 47 45 chr12 96281204 96281684 -47504771 - L1MC2 LINE L1 -1883 4263 3780 * 1486 233 3 3 chr12 96281684 96281993 -47504462 - AluJb SINE Alu -1 311 3 1827 241 47 45 chr12 96281993 96282114 -47504341 - L1MC2 LINE L1 -2366 3780 3661 1367 282 130 56 chr12 96282148 96283572 -47502883 - HAL1 LINE L1 -975 1532 4 273 356 77 0 chr12 96284140 96284244 -47502211 + MER91A DNA MER1_type 63 174 -22 1541 72 40 48 chr12 96286641 96286891 -47499564 - L1PA11 LINE L1 -5 6169 5922 1036 213 67 22 chr12 96287699 96288117 -47498338 + MLT1D LTR MaLR 3 505 0 374 261 50 17 chr12 96288516 96288635 -47497820 - MIR SINE MIR -67 195 73 2371 121 5 16 chr12 96288782 96289161 -47497294 + THE1C LTR MaLR 1 375 0 270 298 88 61 chr12 96290234 96290442 -47496013 - MIR SINE MIR -50 212 2 1023 149 0 13 chr12 96290745 96290899 -47495556 - AluSx SINE Alu -158 154 3 1174 65 0 0 chr12 96291368 96291523 -47494932 - AluY SINE Alu -1 310 156 2052 109 0 64 chr12 96291836 96292166 -47494289 - AluY SINE Alu -2 309 1 262 368 114 5 chr12 96292185 96292386 -47494069 - L2 LINE L2 -173 3099 2877 261 278 113 52 chr12 96292410 96292507 -47493948 - L2 LINE L2 -3 3310 3208 283 327 91 55 chr12 96292840 96293201 -47493254 - MLT1J LTR MaLR -113 398 25 3926 198 25 11 chr12 96293306 96293796 -47492659 + L1M4c LINE L1 22 528 -5856 435 83 0 0 chr12 96293796 96293856 -47492599 + (CCCCG)n Simple_repeat Simple_repeat 3 62 0 3926 198 25 11 chr12 96293856 96294118 -47492337 + L1M4c LINE L1 528 785 -5599 1267 173 76 21 chr12 96294131 96294556 -47491899 + L1M4c LINE L1 2154 2600 -3782 6836 231 15 5 chr12 96294567 96296196 -47490259 - L1P4 LINE L1 -1106 5040 3396 3091 140 69 0 chr12 96296197 96296896 -47489559 + L1P4 LINE L1 5052 5791 -375 232 120 120 0 chr12 96296914 96297014 -47489441 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 381 102 0 0 chr12 96297039 96297102 -47489353 - L1PA8A LINE L1 -358 5773 5711 387 212 0 0 chr12 96297103 96297188 -47489267 + (CATA)n Simple_repeat Simple_repeat 2 86 0 763 143 234 11 chr12 96297252 96297427 -47489028 + Tigger1 DNA MER2_type 2205 2418 0 286 268 0 41 chr12 96297433 96297530 -47488925 - MIR SINE MIR -70 192 100 194 0 39 0 chr12 96297882 96297908 -47488547 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 216 97 0 0 chr12 96297907 96297938 -47488517 + (TG)n Simple_repeat Simple_repeat 2 32 0 26 50 0 0 chr12 96298208 96298248 -47488207 + AT_rich Low_complexity Low_complexity 1 40 0 1333 225 92 35 chr12 96298784 96299303 -47487152 - MER44D DNA MER2_type -1 604 1 196 281 34 45 chr12 96299531 96299620 -47486835 - L2 LINE L2 -1874 1440 1353 3895 146 10 13 chr12 96301287 96301970 -47484485 + L1MA5 LINE L1 5620 6300 0 2393 185 50 8 chr12 96302437 96302935 -47483520 - LTR53 LTR ERVL 0 519 1 2233 101 0 3 chr12 96303951 96304249 -47482206 - AluSg SINE Alu -13 297 1 942 326 145 27 chr12 96304356 96305282 -47481173 + L2 LINE L2 2267 3313 0 1607 191 14 11 chr12 96305653 96305931 -47480524 - AluJb SINE Alu -31 281 3 3262 252 55 7 chr12 96305933 96306944 -47479511 + L1M4 LINE L1 4025 5084 -1062 3155 79 2 0 chr12 96307081 96307498 -47478957 - L1PA7 LINE L1 -3 6151 5734 1885 297 43 31 chr12 96307937 96308720 -47477735 + HERV16 LTR ERVL 1454 2219 -2777 748 310 50 46 chr12 96308719 96309218 -47477237 + HERV16 LTR ERVL 2498 2993 -2661 * 2410 143 11 8 chr12 96309218 96309590 -47476865 - THE1C LTR MaLR -2 373 1 9716 111 51 34 chr12 96309590 96311143 -47475312 - THE1C-int LTR MaLR 0 1580 1 2681 109 0 5 chr12 96311143 96311520 -47474935 - THE1C LTR MaLR 0 375 1 748 310 50 46 chr12 96311520 96311738 -47474717 + HERV16 LTR ERVL 2992 3309 -2345 492 167 0 11 chr12 96311766 96311856 -47474599 - MER39 LTR ERV1 -618 89 1 586 339 70 64 chr12 96312027 96312558 -47473897 - HAL1 LINE L1 -838 1669 1136 280 254 102 0 chr12 96312583 96312701 -47473754 - L1MDa LINE L1 -5124 1416 1287 2030 123 0 3 chr12 96313276 96313607 -47472848 + AluSq SINE Alu 1 330 0 1932 153 84 25 chr12 96314036 96314565 -47471890 - MLT2A2 LTR ERVL 0 554 1 380 351 15 15 chr12 96315175 96315306 -47471149 - MIR3 SINE MIR -33 175 45 535 333 39 22 chr12 96316587 96316818 -47469637 - MIR SINE MIR -26 236 2 265 221 139 35 chr12 96318628 96318762 -47467693 + L1ME LINE L1 5502 5661 -460 268 188 0 0 chr12 96318839 96318887 -47467568 - MER91 DNA MER1_type 0 196 149 311 256 62 47 chr12 96318997 96319126 -47467329 + MIR SINE MIR 122 252 -10 1799 171 0 16 chr12 96319207 96319512 -47466943 + AluJo SINE Alu 11 310 -2 640 319 51 8 chr12 96319630 96319865 -47466590 - MIR SINE MIR 0 262 18 526 139 128 0 chr12 96319921 96320007 -47466448 - AluJ/FLAM SINE Alu -215 97 1 25277 30 3 0 chr12 96320074 96323896 -47462559 - L1PA3 LINE L1 -1 6154 2325 23 54 0 0 chr12 96324089 96324126 -47462329 + AT_rich Low_complexity Low_complexity 1 37 0 2521 65 0 0 chr12 96324441 96324747 -47461708 - AluY SINE Alu -5 306 1 366 282 174 15 chr12 96325454 96325649 -47460806 - MIR SINE MIR -14 248 23 554 220 121 33 chr12 96325651 96325834 -47460621 - MLT1A1 LTR MaLR -118 247 22 348 363 38 0 chr12 96325881 96326041 -47460414 + L2 LINE L2 3148 3313 0 193 331 74 25 chr12 96326208 96326329 -47460126 - L2 LINE L2 -28 3285 3159 1936 140 7 0 chr12 96326477 96326763 -47459692 + AluSx SINE Alu 1 288 -24 2443 284 117 19 chr12 96327291 96328476 -47457979 - L2 LINE L2 -102 3211 1912 260 187 0 27 chr12 96328962 96329037 -47457418 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 325 319 76 0 chr12 96329169 96329288 -47457167 + MIR SINE MIR 20 147 -115 288 268 65 36 chr12 96330503 96330641 -47455814 - MIR3 SINE MIR -6 202 61 377 298 51 22 chr12 96330829 96331007 -47455448 + L2 LINE L2 3127 3309 -4 1130 107 0 6 chr12 96331579 96331757 -47454698 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 186 229 12 24 chr12 96331804 96331887 -47454568 + GA-rich Low_complexity Low_complexity 2 83 0 418 316 34 25 chr12 96332262 96332461 -47453994 - MIR SINE MIR -51 211 10 286 275 88 0 chr12 96333334 96333425 -47453030 + MIR SINE MIR 82 180 -82 22 70 0 0 chr12 96333639 96333682 -47452773 + AT_rich Low_complexity Low_complexity 1 43 0 323 175 63 0 chr12 96333682 96333745 -47452710 - MIR SINE MIR -105 157 91 529 330 48 18 chr12 96334450 96334677 -47451778 + MIR SINE MIR 15 248 -14 23 33 0 0 chr12 96336149 96336179 -47450276 + AT_rich Low_complexity Low_complexity 1 30 0 1946 250 38 62 chr12 96337092 96337773 -47448682 + MER21B LTR ERV1 147 811 -52 27 87 0 0 chr12 96338445 96338514 -47447941 + AT_rich Low_complexity Low_complexity 1 69 0 2118 145 0 0 chr12 96339453 96339764 -47446691 + AluSx SINE Alu 1 311 -1 479 238 21 3 chr12 96339823 96339945 -47446510 + MER2 DNA MER2_type 1 133 -106 921 253 40 77 chr12 96340009 96340385 -47446070 - MSTD LTR MaLR -32 364 3 477 0 0 0 chr12 96340535 96340588 -47445867 + (TAG)n Simple_repeat Simple_repeat 1 53 0 1101 172 0 0 chr12 96341340 96341520 -47444935 + ERVL-B1 LTR ERVL 5217 5396 -368 * 1342 167 0 29 chr12 96341519 96341765 -47444690 + ERVL-B1 LTR ERVL 5519 5757 -7 1058 199 214 95 chr12 96341767 96342230 -47444225 + MLT2B1 LTR ERVL 3 520 0 258 32 0 0 chr12 96345028 96345059 -47441396 + (CA)n Simple_repeat Simple_repeat 1 31 0 3868 63 2 0 chr12 96345379 96345872 -47440583 - L1PA7 LINE L1 -291 5863 5370 1962 104 0 24 chr12 96345872 96346167 -47440288 + L1PA7 LINE L1 5864 6153 -1 449 319 139 40 chr12 96347035 96347572 -47438883 + L2 LINE L2 2553 3132 -181 221 321 60 0 chr12 96347604 96347688 -47438767 + L2 LINE L2 3218 3306 -7 227 286 11 77 chr12 96347708 96347766 -47438689 + L2 LINE L2 3184 3235 -37 2091 204 29 5 chr12 96347766 96348182 -47438273 - MSTB LTR MaLR 0 426 1 227 286 11 77 chr12 96348182 96348214 -47438241 + L2 LINE L2 3235 3268 -4 2052 197 33 20 chr12 96348255 96348712 -47437743 + MLT1C LTR MaLR 3 465 -2 526 280 48 21 chr12 96348816 96349002 -47437453 + MIR SINE MIR 72 262 0 257 269 177 50 chr12 96349215 96349356 -47437099 + L3 LINE CR1 1347 1505 -72 1186 253 89 13 chr12 96349405 96349777 -47436678 + LTR16A LTR ERVL 21 420 -30 394 291 141 33 chr12 96350655 96350868 -47435587 + MIR SINE MIR 15 250 -12 229 377 0 0 chr12 96350878 96350955 -47435500 - MIR SINE MIR -119 143 67 1435 222 19 15 chr12 96352287 96352680 -47433775 + MLT2D LTR ERVL 3 394 -70 231 36 0 0 chr12 96352699 96352727 -47433728 + (TA)n Simple_repeat Simple_repeat 2 29 0 201 227 64 0 chr12 96352770 96352880 -47433575 + (TA)n Simple_repeat Simple_repeat 1 117 0 180 305 114 71 chr12 96353349 96353716 -47432739 + L2 LINE L2 2806 3188 -125 468 276 16 8 chr12 96354768 96354891 -47431564 - MER5A DNA MER1_type -2 187 64 364 380 64 29 chr12 96357601 96358009 -47428446 + HAL1b LINE L1 77 498 -850 343 264 69 14 chr12 96358220 96358364 -47428091 + L1MC4a LINE L1 4057 4208 -1938 1520 234 86 54 chr12 96358574 96359153 -47427302 + MLT1G LTR MaLR 1 585 -5 527 336 99 35 chr12 96359300 96359425 -47427030 + L1MC4a LINE L1 4633 4749 -1397 2114 126 3 0 chr12 96359425 96359727 -47426728 + AluSx SINE Alu 1 303 -9 527 336 99 35 chr12 96359727 96360166 -47426289 + L1MC4a LINE L1 4749 5233 -913 1200 263 147 25 chr12 96360181 96360828 -47425627 + L1MC4a LINE L1 5255 5980 -1828 321 259 100 24 chr12 96361238 96361476 -47424979 - L1MC5 LINE L1 -199 7817 7557 233 219 122 41 chr12 96361566 96361580 -47424875 - L1MC5 LINE L1 -527 7434 7423 7553 23 1 1 chr12 96361580 96363186 -47423269 - L1PA4 LINE L1 0 6155 4549 233 219 122 41 chr12 96363186 96363294 -47423161 - L1MC5 LINE L1 -538 7423 7302 4325 186 16 58 chr12 96363537 96364370 -47422085 - L1MA10 LINE L1 -14 6320 5453 1540 176 9 44 chr12 96364370 96364689 -47421766 - AluJo SINE Alu 0 312 5 4325 186 16 58 chr12 96364689 96364745 -47421710 - L1MA10 LINE L1 -881 5453 5396 426 39 0 0 chr12 96364745 96364797 -47421658 + (TG)n Simple_repeat Simple_repeat 1 52 0 4325 186 16 58 chr12 96364797 96364990 -47421465 - L1MA10 LINE L1 -938 5396 5283 2783 228 19 59 chr12 96364991 96365900 -47420555 - L1M4 LINE L1 -743 5403 4532 436 271 89 68 chr12 96365910 96366364 -47420091 - L1MC5 LINE L1 -809 7152 6761 6600 156 41 2 chr12 96366364 96367546 -47418909 + Tigger3b DNA MER2_type 4 1231 0 436 271 89 68 chr12 96367546 96367652 -47418803 - L1MC5 LINE L1 -1200 6761 6659 26 30 0 0 chr12 96367710 96367743 -47418712 + AT_rich Low_complexity Low_complexity 1 33 0 402 303 115 59 chr12 96367837 96368124 -47418331 - L1MC4a LINE L1 -1460 6348 6046 1650 265 42 11 chr12 96368165 96368709 -47417746 - L1MC4a LINE L1 -1926 5882 5322 225 250 39 29 chr12 96369324 96369428 -47417027 + L1ME LINE L1 5665 5769 -393 2356 61 0 0 chr12 96369578 96369857 -47416598 + AluY SINE Alu 16 294 -17 207 0 0 0 chr12 96369858 96369881 -47416574 + (TA)n Simple_repeat Simple_repeat 2 24 0 1257 181 38 114 chr12 96370782 96371175 -47415280 - MLT1A1 LTR MaLR -2 363 1 887 287 113 21 chr12 96371179 96371694 -47414761 + L1MEc LINE L1 1223 1784 -4612 4366 207 55 116 chr12 96371697 96373157 -47413298 + MLT1-int LTR MaLR 1 1371 0 1502 316 117 35 chr12 96373193 96374143 -47412312 + L2 LINE L2 2152 3198 -115 207 0 0 0 chr12 96374143 96374166 -47412289 + (CA)n Simple_repeat Simple_repeat 2 24 0 1502 316 117 35 chr12 96374166 96374291 -47412164 + L2 LINE L2 3198 3311 -2 1411 182 0 4 chr12 96374566 96374802 -47411653 + AluJb SINE Alu 3 237 -75 285 299 0 58 chr12 96374802 96374889 -47411566 - MIR SINE MIR -170 92 11 223 287 96 26 chr12 96374905 96375020 -47411435 - MIR SINE MIR -94 168 46 502 218 9 18 chr12 96375149 96375259 -47411196 - L2 LINE L2 -14 3299 3191 204 167 0 24 chr12 96377069 96377111 -47409344 + MIR SINE MIR 114 154 -108 589 199 244 17 chr12 96378610 96378786 -47407669 - MIR SINE MIR -1 261 46 2167 177 22 5 chr12 96378961 96379368 -47407087 - MLT2D LTR ERVL 0 414 1 1918 120 60 0 chr12 96379893 96380177 -47406278 + AluSg SINE Alu 1 301 -9 257 311 196 34 chr12 96380328 96380537 -47405918 - L2 LINE L2 -512 2802 2560 1427 201 10 31 chr12 96380576 96380870 -47405585 + AluJo SINE Alu 1 288 -24 239 337 11 22 chr12 96380912 96381004 -47405451 - L2 LINE L2 0 3272 3182 1082 237 75 26 chr12 96381396 96381810 -47404645 - MLT1C LTR MaLR 0 505 1 590 279 105 26 chr12 96382705 96382947 -47403508 - MIR SINE MIR -2 260 2 1413 144 47 0 chr12 96383439 96383654 -47402801 + AluSx SINE Alu 1 225 -87 205 233 14 55 chr12 96383654 96383727 -47402728 + GA-rich Low_complexity Low_complexity 4 73 0 2018 164 123 5 chr12 96384719 96385102 -47401353 - MSTA LTR MaLR 0 428 1 2335 101 0 7 chr12 96387072 96387380 -47399075 + AluSc SINE Alu 1 306 -3 347 275 126 54 chr12 96388252 96388419 -47398036 + L2 LINE L2 3127 3305 -8 1111 152 0 0 chr12 96388815 96388980 -47397475 - FRAM SINE Alu -11 165 1 1278 143 5 23 chr12 96389060 96389276 -47397179 - AluJb SINE Alu -100 212 1 1581 189 19 25 chr12 96389418 96389735 -47396720 + Tigger7 DNA MER2_type 1 315 -2172 958 202 44 0 chr12 96389712 96389915 -47396540 + Tigger7 DNA MER2_type 2267 2478 -9 * 351 313 0 0 chr12 96389958 96390057 -47396398 - MER5A DNA MER1_type -82 107 9 244 315 71 24 chr12 96391788 96391915 -47394540 - L2 LINE L2 -4 3309 3177 355 309 39 39 chr12 96392868 96393046 -47393409 + MLT1J1 LTR MaLR 36 213 -233 309 277 54 42 chr12 96393106 96393272 -47393183 + MLT1I LTR MaLR 240 407 -2 230 358 0 0 chr12 96393316 96393383 -47393072 - L2 LINE L2 -5 3267 3201 8114 133 17 30 chr12 96393392 96395576 -47390879 + L1PA11 LINE L1 4027 6174 0 213 132 0 0 chr12 96396123 96396161 -47390294 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1761 116 63 76 chr12 96396473 96396853 -47389602 + THE1C LTR MaLR 1 375 0 326 149 69 46 chr12 96397189 96397276 -47389179 + L1MD3 LINE L1 7890 7978 -17 253 277 12 12 chr12 96397280 96397363 -47389092 + GA-rich Low_complexity Low_complexity 3 85 0 346 323 84 46 chr12 96399727 96399966 -47386489 - MIR SINE MIR -8 254 7 21 57 0 0 chr12 96400776 96400811 -47385644 + AT_rich Low_complexity Low_complexity 1 35 0 376 293 70 32 chr12 96400866 96401023 -47385432 + MER20B DNA MER1_type 2 164 -619 21 36 0 0 chr12 96401405 96401433 -47385022 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 96402542 96402577 -47383878 + AT_rich Low_complexity Low_complexity 1 35 0 323 271 167 21 chr12 96402580 96402724 -47383731 - MIR SINE MIR -16 246 82 513 0 0 0 chr12 96403779 96403836 -47382619 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2469 65 3 0 chr12 96403836 96404145 -47382310 + AluY SINE Alu 2 311 0 572 301 32 0 chr12 96404806 96404962 -47381493 + MER91B DNA MER1_type 18 178 -12 228 86 0 0 chr12 96405327 96405362 -47381093 + (TC)n Simple_repeat Simple_repeat 2 36 0 1919 124 24 0 chr12 96406668 96406959 -47379496 - Tigger2 DNA MER2_type -1 2717 2420 773 141 0 0 chr12 96407063 96407191 -47379264 + L1PA5 LINE L1 6019 6146 -8 24 0 0 0 chr12 96407191 96407215 -47379240 + AT_rich Low_complexity Low_complexity 1 24 0 970 287 54 12 chr12 96407240 96407575 -47378880 + MLT1E3 LTR MaLR 276 624 0 1862 117 4 8 chr12 96407825 96408089 -47378366 - AluSx SINE Alu -9 303 41 291 275 0 12 chr12 96408651 96408731 -47377724 + MLT1H LTR MaLR 125 203 -346 229 375 68 30 chr12 96408921 96409158 -47377297 - L2 LINE L2 -2090 1224 979 508 306 35 6 chr12 96409420 96409593 -47376862 + MLT1G1 LTR MaLR 10 187 -408 189 0 0 0 chr12 96410295 96410316 -47376139 + (T)n Simple_repeat Simple_repeat 1 21 0 523 316 52 6 chr12 96410877 96411051 -47375404 + MIR SINE MIR 9 190 -72 273 289 26 0 chr12 96412271 96412347 -47374108 + GA-rich Low_complexity Low_complexity 3 80 0 637 180 111 116 chr12 96413316 96413446 -47373009 + MER5A DNA MER1_type 1 131 -58 2153 105 3 16 chr12 96413446 96413759 -47372696 + AluY SINE Alu 1 309 -2 637 180 111 116 chr12 96413759 96413817 -47372638 + MER5A DNA MER1_type 131 188 -1 418 318 71 10 chr12 96413832 96414030 -47372425 - MIR SINE MIR -50 212 3 300 117 217 0 chr12 96414744 96414804 -47371651 + MER94 DNA DNA 3 75 -59 616 267 106 0 chr12 96415075 96415236 -47371219 - MER45A DNA AcHobo 0 178 1 204 223 117 43 chr12 96415718 96415812 -47370643 - L3b LINE CR1 -200 1383 1283 343 275 52 11 chr12 96415885 96416001 -47370454 - MIR SINE MIR -65 143 36 747 247 156 48 chr12 96416142 96416494 -47369961 + MER57A LTR ERV1 14 403 0 230 196 18 18 chr12 96417568 96417624 -47368831 + MIR SINE MIR 75 130 -132 23 0 0 0 chr12 96417883 96417906 -47368549 + AT_rich Low_complexity Low_complexity 1 23 0 4452 168 10 18 chr12 96417955 96418791 -47367664 + L1MB1 LINE L1 5340 6168 0 22991 178 19 20 chr12 96418872 96425674 -47360781 + L1PA11 LINE L1 1 7608 -4 345 340 128 0 chr12 96425870 96426011 -47360444 + MIR SINE MIR 55 213 -49 198 0 0 0 chr12 96426865 96426887 -47359568 + (CA)n Simple_repeat Simple_repeat 2 23 0 351 187 65 49 chr12 96427182 96427305 -47359150 + L1MC5 LINE L1 7614 7738 -223 1018 144 7 0 chr12 96427311 96427464 -47358991 + Tigger3(Golem) DNA MER2_type 2861 3014 -15 967 184 56 0 chr12 96427691 96427870 -47358585 + MER20 DNA MER1_type 31 219 0 192 216 0 0 chr12 96427873 96427910 -47358545 - L3 LINE CR1 -2 1575 1539 225 244 30 104 chr12 96428771 96428906 -47357549 + L1MC5 LINE L1 7411 7535 -426 612 176 7 66 chr12 96428913 96429049 -47357406 + FLAM_A SINE Alu 1 128 -5 45 55 0 0 chr12 96429294 96429367 -47357088 + AT_rich Low_complexity Low_complexity 1 73 0 511 283 19 25 chr12 96429965 96430124 -47356331 - MIR3 SINE MIR -18 190 33 1395 228 53 8 chr12 96430291 96430686 -47355769 + LTR37A LTR ERV1 13 425 -1 678 266 24 34 chr12 96430752 96430959 -47355496 - MIR SINE MIR -56 206 2 2257 92 0 0 chr12 96431516 96431825 -47354630 - AluY SINE Alu 0 309 1 214 322 17 51 chr12 96432416 96432534 -47353921 + L2 LINE L2 2554 2667 -647 302 62 42 0 chr12 96433678 96433726 -47352729 + MADE1 DNA Mariner 31 80 0 233 205 246 41 chr12 96434957 96435079 -47351376 - L2 LINE L2 -2 3311 3165 333 0 0 0 chr12 96435239 96435276 -47351179 + (CA)n Simple_repeat Simple_repeat 1 37 0 1431 207 21 52 chr12 96436182 96436568 -47349887 + MLT1A2 LTR MaLR 1 374 0 2281 104 0 3 chr12 96436574 96436873 -47349582 - AluSx SINE Alu -5 307 10 1582 163 9 75 chr12 96437154 96437474 -47348981 - AluSx SINE Alu -13 299 1 771 306 60 8 chr12 96437515 96437868 -47348587 - L1ME LINE L1 -431 5739 5369 206 318 206 9 chr12 96439715 96439822 -47346633 - L2 LINE L2 -3 3310 3183 202 280 80 0 chr12 96440072 96440147 -47346308 + MIR SINE MIR 182 262 0 572 339 66 20 chr12 96441506 96441898 -47344557 + L2 LINE L2 1634 2043 -1271 835 336 74 35 chr12 96442703 96443418 -47343037 + L2 LINE L2 1419 2161 -1153 6123 197 24 61 chr12 96543633 96544049 -47242406 - L1 LINE L1 -1114 5032 4602 307 59 0 0 chr12 96544049 96544103 -47242352 - Alu SINE Alu -1 301 256 6123 197 24 61 chr12 96544103 96544448 -47242007 - L1 LINE L1 -1544 4602 4246 15073 32 4 0 chr12 96544448 96547016 -47239439 - L1PA4 LINE L1 -3 6152 3569 6123 197 24 61 chr12 96547016 96547920 -47238535 - L1 LINE L1 -1900 4246 3377 334 259 18 62 chr12 96547973 96548085 -47238370 - L2 LINE L2 -8 3305 3199 431 358 58 16 chr12 96548420 96548610 -47237845 - MIR3 SINE MIR -7 201 4 270 0 0 0 chr12 96548684 96548714 -47237741 + (CA)n Simple_repeat Simple_repeat 1 30 0 268 299 31 0 chr12 96551445 96551542 -47234913 + (TA)n Simple_repeat Simple_repeat 2 101 0 2454 88 0 0 chr12 96551696 96552004 -47234451 + AluY SINE Alu 1 308 -3 575 306 37 62 chr12 96552104 96552346 -47234109 + HAL1 LINE L1 116 346 -2161 1981 126 0 14 chr12 96552346 96552639 -47233816 + AluJb SINE Alu 23 311 -1 575 306 37 62 chr12 96552639 96552801 -47233654 + HAL1 LINE L1 346 510 -1997 1560 179 0 43 chr12 96552837 96553116 -47233339 + AluJo SINE Alu 1 267 -45 317 326 15 7 chr12 96553406 96553541 -47232914 + HAL1 LINE L1 757 892 -1615 252 0 0 0 chr12 96553541 96553569 -47232886 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1481 143 30 0 chr12 96553634 96553900 -47232555 + L1PB4 LINE L1 5519 5792 -364 272 173 27 13 chr12 96553906 96553981 -47232474 + (TA)n Simple_repeat Simple_repeat 1 76 0 2212 116 39 14 chr12 96553981 96554358 -47232097 + L1PB4 LINE L1 5782 6156 0 256 211 138 96 chr12 96554358 96554670 -47231785 + HAL1 LINE L1 978 1302 -1205 26 64 0 0 chr12 96555271 96555318 -47231137 + AT_rich Low_complexity Low_complexity 1 47 0 527 202 52 57 chr12 96555319 96555512 -47230943 - L1MC5 LINE L1 -51 7910 7719 290 257 0 19 chr12 96555512 96555617 -47230838 + (TA)n Simple_repeat Simple_repeat 2 104 0 614 238 30 98 chr12 96555749 96556157 -47230298 - L1MC5 LINE L1 -883 6925 6564 1720 185 16 29 chr12 96556177 96556491 -47229964 - AluJo SINE Alu -2 310 1 368 111 16 0 chr12 96556631 96556694 -47229761 + (GA)n Simple_repeat Simple_repeat 1 64 0 236 167 0 0 chr12 96556694 96556736 -47229719 + GA-rich Low_complexity Low_complexity 4 45 0 238 336 141 32 chr12 96558129 96558391 -47228064 + L2 LINE L2 2798 3083 -189 4822 49 2 2 chr12 96560314 96560911 -47225544 - L1PA7 LINE L1 -1 6153 5557 2274 71 0 0 chr12 96560911 96561272 -47225183 + L1PA7 LINE L1 5200 5560 -594 284 282 73 24 chr12 96561652 96561776 -47224679 + MIR SINE MIR 11 140 -122 723 280 116 94 chr12 96561879 96562433 -47224022 - MLT1K LTR MaLR 0 588 23 316 301 10 20 chr12 96563023 96563139 -47223316 + GA-rich Low_complexity Low_complexity 1 194 0 1501 158 86 14 chr12 96563270 96563561 -47222894 - AluJo SINE Alu 0 312 1 237 270 108 14 chr12 96563864 96564012 -47222443 - L1ME LINE L1 -338 5783 5622 259 204 74 0 chr12 96566170 96566224 -47220231 + L2 LINE L2 3214 3271 -1 640 273 104 17 chr12 96566598 96566829 -47219626 + MIR SINE MIR 12 262 0 259 274 19 38 chr12 96567028 96567134 -47219321 + MIR SINE MIR 92 195 -67 1883 169 3 0 chr12 96567134 96567418 -47219037 + AluSx SINE Alu 1 285 -27 658 275 69 28 chr12 96568932 96569150 -47217305 - MIR SINE MIR -19 243 17 855 143 0 0 chr12 96569273 96569392 -47217063 + AluJb SINE Alu 1 119 -193 231 36 0 0 chr12 96569392 96569420 -47217035 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 528 271 89 34 chr12 96569516 96569785 -47216670 - L2 LINE L2 0 3313 3030 291 54 0 0 chr12 96569786 96569823 -47216632 + (TA)n Simple_repeat Simple_repeat 2 38 0 1269 81 0 0 chr12 96569823 96569983 -47216472 - AluY SINE Alu -8 303 144 332 389 91 9 chr12 96570419 96570712 -47215743 - L2 LINE L2 -311 3002 2690 368 268 71 0 chr12 96570954 96571066 -47215389 - L2 LINE L2 -610 2704 2585 235 302 32 0 chr12 96571078 96571141 -47215314 - MIR SINE MIR -193 69 5 307 339 154 0 chr12 96572510 96572640 -47213815 - MIR3 SINE MIR -21 187 38 219 59 0 78 chr12 96572776 96572827 -47213628 + (CTA)n Simple_repeat Simple_repeat 1 47 0 460 241 18 77 chr12 96572834 96573004 -47213451 + MIR SINE MIR 102 261 -1 2271 93 0 37 chr12 96573048 96573371 -47213084 - AluY SINE Alu 0 311 1 1545 216 102 68 chr12 96573453 96574007 -47212448 - MLT1F1 LTR MaLR 0 567 1 1900 173 0 0 chr12 96574175 96574475 -47211980 - AluJb SINE Alu 0 312 13 253 346 0 12 chr12 96574588 96574669 -47211786 - MIR3 SINE MIR -48 160 81 2247 80 9 58 chr12 96574773 96575100 -47211355 - AluSx SINE Alu -1 311 1 237 33 0 0 chr12 96575481 96575511 -47210944 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1673 193 25 4 chr12 96575520 96575800 -47210655 - AluJo SINE Alu -26 286 1 201 244 0 0 chr12 96576326 96576367 -47210088 + (CA)n Simple_repeat Simple_repeat 2 42 0 938 193 12 6 chr12 96577417 96577588 -47208867 + FAM SINE Alu 1 172 -3 529 332 73 61 chr12 96577678 96577991 -47208464 - L2 LINE L2 -1 3271 2955 275 225 150 0 chr12 96578401 96578481 -47207974 - L2 LINE L2 -1 3312 3221 * 293 261 159 0 chr12 96578467 96578555 -47207900 + L2 LINE L2 2677 2778 -536 255 320 113 73 chr12 96578561 96578836 -47207619 - L2 LINE L2 -90 3182 2897 289 194 79 65 chr12 96578979 96579118 -47207337 - MLT1J LTR MaLR -61 450 310 370 314 160 5 chr12 96579318 96579506 -47206949 - L2 LINE L2 -529 2785 2569 3531 133 0 24 chr12 96579792 96580332 -47206123 - MER1A DNA MER1_type 0 527 1 1656 176 36 4 chr12 96580431 96580709 -47205746 + AluJo SINE Alu 1 287 -25 980 288 104 64 chr12 96580964 96581766 -47204689 + L2 LINE L2 2337 3215 -98 2035 155 3 3 chr12 96581766 96582075 -47204380 + AluJb SINE Alu 1 309 -3 980 288 104 64 chr12 96582075 96582177 -47204278 + L2 LINE L2 3215 3312 -1 358 324 122 60 chr12 96582203 96582906 -47203549 + L2 LINE L2 1604 2350 -964 358 366 35 7 chr12 96582922 96583064 -47203391 - MIR SINE MIR -110 152 7 403 319 73 25 chr12 96583077 96583281 -47203174 + L1ME4a LINE L1 5714 5927 -194 1457 187 24 44 chr12 96583803 96584097 -47202358 + AluJo SINE Alu 1 288 -24 269 206 0 29 chr12 96584111 96584179 -47202276 + LTR67 LTR ERVL 490 555 -2 5690 77 4 1 chr12 96585851 96586644 -47199811 - L1PA8A LINE L1 -28 6103 5309 4784 114 3 1 chr12 96586647 96587390 -47199065 + L1PA8A LINE L1 4553 5296 -850 510 319 88 10 chr12 96587392 96587596 -47198859 + MIR SINE MIR 26 245 -17 337 256 60 94 chr12 96588231 96588279 -47198176 + MER5A DNA MER1_type 77 125 -64 2156 121 0 3 chr12 96588279 96588576 -47197879 - AluSx SINE Alu -16 296 1 337 256 60 94 chr12 96588576 96588644 -47197811 + MER5A DNA MER1_type 125 189 0 803 200 108 5 chr12 96588717 96588912 -47197543 - MER20 DNA MER1_type -4 215 1 359 256 149 25 chr12 96589376 96589497 -47196958 + MIR3 SINE MIR 23 158 -50 527 260 30 37 chr12 96589627 96589772 -47196683 + L1MC4 LINE L1 7775 7919 -123 183 100 0 0 chr12 96589772 96589802 -47196653 + (TA)n Simple_repeat Simple_repeat 1 30 0 527 260 30 37 chr12 96589802 96589925 -47196530 + L1MC4 LINE L1 7919 8041 -1 259 267 129 20 chr12 96589940 96590041 -47196414 + L2 LINE L2 3016 3127 -145 183 266 31 47 chr12 96590507 96590571 -47195884 + L2 LINE L2 3234 3296 -17 376 241 74 0 chr12 96590683 96590791 -47195664 - MIR SINE MIR 0 262 147 2206 111 76 15 chr12 96590981 96591324 -47195131 - THE1B LTR MaLR 0 364 1 415 243 0 88 chr12 96591411 96591547 -47194908 - L2 LINE L2 -1 3271 3148 574 302 99 19 chr12 96591726 96591938 -47194517 - MIR SINE MIR -3 259 31 564 271 12 77 chr12 96592018 96592235 -47194220 + MIR SINE MIR 3 203 -59 321 295 185 29 chr12 96592776 96592949 -47193506 - MIR SINE MIR -11 251 52 269 119 0 0 chr12 96592955 96592997 -47193458 - L2 LINE L2 -1 3312 3271 294 258 0 119 chr12 96593477 96593628 -47192827 - MIR SINE MIR -73 189 57 854 270 79 18 chr12 96593694 96593972 -47192483 - MLT1I LTR MaLR -19 390 96 31 26 0 0 chr12 96594174 96594212 -47192243 + AT_rich Low_complexity Low_complexity 1 38 0 187 213 85 0 chr12 96594776 96594823 -47191632 + L3 LINE CR1 1526 1576 -1 255 250 0 0 chr12 96595942 96596026 -47190429 + (TA)n Simple_repeat Simple_repeat 1 84 0 1992 145 7 3 chr12 96596028 96596318 -47190137 - AluSx SINE Alu -16 296 6 187 219 0 27 chr12 96596370 96596443 -47190012 + (TA)n Simple_repeat Simple_repeat 2 72 0 310 198 22 33 chr12 96596513 96596695 -47189760 + (TA)n Simple_repeat Simple_repeat 1 180 0 189 213 0 0 chr12 96596708 96596755 -47189700 + (TA)n Simple_repeat Simple_repeat 1 47 0 309 240 0 0 chr12 96597019 96597115 -47189340 + (TA)n Simple_repeat Simple_repeat 2 97 0 599 281 72 53 chr12 96597466 96597992 -47188463 + L1MC/D LINE L1 5279 5811 -311 426 180 123 16 chr12 96598430 96598552 -47187903 - MIR SINE MIR 0 262 128 180 302 0 0 chr12 96599906 96599949 -47186506 + MIR SINE MIR 57 99 -109 190 221 73 0 chr12 96599989 96600057 -47186398 - MIR SINE MIR -62 200 128 204 359 9 28 chr12 96600099 96600205 -47186250 + MIR3 SINE MIR 97 200 -8 2870 3 0 0 chr12 96600945 96601253 -47185202 + AluYa5 SINE Alu 1 308 -3 2062 163 34 37 chr12 96601570 96602006 -47184449 + MLT1C LTR MaLR 1 435 -32 245 154 0 0 chr12 96602006 96602045 -47184410 - Tigger5 DNA MER2_type 0 2323 2285 346 200 29 0 chr12 96602079 96602149 -47184306 - Tigger5 DNA MER2_type -2244 79 8 2034 134 41 44 chr12 96602150 96602515 -47183940 - THE1B LTR MaLR 0 364 1 283 57 0 0 chr12 96602525 96602560 -47183895 + MLT1C LTR MaLR 433 467 0 1986 125 68 6 chr12 96602722 96603043 -47183412 - L1PA15 LINE L1 -1 6164 5824 2120 129 0 16 chr12 96603045 96603348 -47183107 - AluSx SINE Alu -14 298 1 445 122 14 0 chr12 96603360 96603434 -47183021 + L1P LINE L1 3620 3694 -2452 2181 110 3 19 chr12 96603476 96603785 -47182670 + AluY SINE Alu 2 305 -6 732 266 118 26 chr12 96605584 96605888 -47180567 + L2 LINE L2 2968 3299 -14 670 231 49 99 chr12 96606040 96606283 -47180172 - MIR SINE MIR 0 262 32 583 200 49 112 chr12 96606393 96606598 -47179857 - MER20 DNA MER1_type -27 192 1 208 164 0 73 chr12 96607016 96607071 -47179384 + L2 LINE L2 2935 2985 -287 286 264 146 45 chr12 96607188 96607298 -47179157 + L2 LINE L2 3189 3309 -4 292 111 32 0 chr12 96608542 96608605 -47177850 + CT-rich Low_complexity Low_complexity 2 66 0 2151 100 0 4 chr12 96609005 96609317 -47177138 - AluSg SINE Alu 0 312 2 242 206 59 29 chr12 96609376 96609444 -47177011 - MER67D LTR ERV1 -13 501 432 * 517 189 123 15 chr12 96609416 96609664 -47176791 - MER31B LTR ERV1 -76 390 1 739 240 127 32 chr12 96609981 96610289 -47176166 - L2 LINE L2 -14 3299 2963 488 250 0 17 chr12 96610633 96610749 -47175706 + MIR SINE MIR 35 148 -114 255 339 71 16 chr12 96611171 96611298 -47175157 + L2 LINE L2 3137 3270 -2 205 410 0 0 chr12 96611472 96611533 -47174922 + L3b LINE CR1 1464 1524 -59 30 0 0 0 chr12 96612113 96612143 -47174312 + AT_rich Low_complexity Low_complexity 1 30 0 1803 124 19 0 chr12 96612144 96612409 -47174046 - AluJo SINE Alu -41 271 2 23 0 0 0 chr12 96612506 96612529 -47173926 + AT_rich Low_complexity Low_complexity 1 23 0 2028 184 69 31 chr12 96612578 96613057 -47173398 - MLT1D LTR MaLR 0 505 9 1829 160 12 35 chr12 96613758 96614077 -47172378 - AluJo SINE Alu 0 312 1 189 121 0 0 chr12 96614548 96614581 -47171874 + (CA)n Simple_repeat Simple_repeat 2 34 0 314 127 0 32 chr12 96615554 96615617 -47170838 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 383 300 172 27 chr12 96615683 96615900 -47170555 + MIR SINE MIR 10 250 -12 195 49 73 0 chr12 96616094 96616135 -47170320 + (TA)n Simple_repeat Simple_repeat 1 44 0 1944 155 14 0 chr12 96616144 96616435 -47170020 - AluSx SINE Alu -17 295 1 24 53 0 0 chr12 96616435 96616473 -47169982 + AT_rich Low_complexity Low_complexity 1 38 0 470 176 0 0 chr12 96616477 96616551 -47169904 - FRAM SINE Alu -54 122 49 22 0 0 0 chr12 96616724 96616746 -47169709 + AT_rich Low_complexity Low_complexity 1 22 0 2406 39 0 42 chr12 96617431 96617737 -47168718 + AluY SINE Alu 11 303 -8 214 339 108 11 chr12 96618115 96618301 -47168154 - L2 LINE L2 -262 3010 2807 573 193 140 0 chr12 96619658 96619772 -47166683 + FLAM_A SINE Alu 1 130 -3 1914 161 0 3 chr12 96620543 96620865 -47165590 - AluJb SINE Alu 0 312 1 837 273 13 13 chr12 96621107 96621334 -47165121 + MIR SINE MIR 15 241 -21 208 319 0 0 chr12 96621358 96621430 -47165025 + MIR SINE MIR 189 260 -2 4764 141 53 108 chr12 96621800 96622269 -47164186 - L1MC1 LINE L1 -5 6328 5834 1933 159 3 0 chr12 96622269 96622578 -47163877 - AluJb SINE Alu -2 310 1 4764 141 53 108 chr12 96622578 96623144 -47163311 - L1MC1 LINE L1 -499 5834 5238 1380 151 92 75 chr12 96623144 96623449 -47163006 - AluJo SINE Alu -2 310 1 4764 141 53 108 chr12 96623449 96623524 -47162931 - L1MC1 LINE L1 -1095 5238 5243 1793 142 0 61 chr12 96623524 96623835 -47162620 + AluJb SINE Alu 1 292 -20 4764 141 53 108 chr12 96623835 96623868 -47162587 - L1MC1 LINE L1 -1089 5244 5211 2506 50 7 0 chr12 96624892 96625189 -47161266 + AluY SINE Alu 1 299 -12 234 321 46 18 chr12 96625709 96625818 -47160637 - MIR3 SINE MIR -8 200 89 546 282 113 25 chr12 96626061 96626387 -47160068 + MLT1K LTR MaLR 170 524 -64 869 307 27 57 chr12 96626391 96626572 -47159883 + L2 LINE L2 2922 3107 -206 881 139 0 0 chr12 96626572 96626701 -47159754 - FLAM_C SINE Alu -3 130 2 869 307 27 57 chr12 96626701 96626923 -47159532 + L2 LINE L2 3107 3313 0 2133 127 0 0 chr12 96627002 96627285 -47159170 - AluSx SINE Alu -29 283 1 988 123 18 65 chr12 96627569 96627739 -47158716 + AluJo SINE Alu 86 247 -65 306 328 107 8 chr12 96629056 96629178 -47157277 - L2 LINE L2 0 3272 3139 2650 87 5 27 chr12 96629275 96629645 -47156810 - THE1B LTR MaLR -2 362 1 213 139 0 0 chr12 96630390 96630433 -47156022 + (GGA)n Simple_repeat Simple_repeat 2 44 0 544 117 0 0 chr12 96630465 96630542 -47155913 + AluJb SINE Alu 38 114 -198 1252 61 0 11 chr12 96630545 96630726 -47155729 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 262 185 37 0 chr12 96630856 96630910 -47155545 - L2 LINE L2 -2 3311 3256 939 177 0 7 chr12 96630964 96631105 -47155350 - FRAM SINE Alu -30 146 7 233 330 47 19 chr12 96631106 96631212 -47155243 - L2 LINE L2 -38 3275 3167 27 29 0 0 chr12 96631809 96631843 -47154612 + AT_rich Low_complexity Low_complexity 1 34 0 2188 133 0 0 chr12 96632138 96632447 -47154008 - AluSx SINE Alu -3 309 1 27 29 0 0 chr12 96632714 96632748 -47153707 + AT_rich Low_complexity Low_complexity 1 34 0 2262 80 0 33 chr12 96633049 96633350 -47153105 + AluY SINE Alu 1 291 -20 329 317 22 50 chr12 96633609 96633789 -47152666 + L1M4 LINE L1 4963 5137 -1009 2147 146 0 3 chr12 96634184 96634492 -47151963 - AluSx SINE Alu -5 307 1 246 207 180 9 chr12 96634779 96634890 -47151565 - L1ME4a LINE L1 -2 6119 5990 815 216 107 70 chr12 96635602 96635866 -47150589 - MER58B DNA MER1_type -2079 341 61 1836 160 3 22 chr12 96635866 96636184 -47150271 + AluJb SINE Alu 1 312 0 815 216 107 70 chr12 96636184 96636247 -47150208 - MER58B DNA MER1_type -2359 61 2 195 129 0 0 chr12 96637407 96637438 -47149017 + (CA)n Simple_repeat Simple_repeat 1 31 0 183 315 96 0 chr12 96638764 96638837 -47147618 - MIR SINE MIR -136 126 47 202 108 0 0 chr12 96638847 96638884 -47147571 + (TTTA)n Simple_repeat Simple_repeat 3 92 0 1756 181 0 0 chr12 96638884 96639166 -47147289 - AluJb SINE Alu -30 282 1 443 363 38 28 chr12 96639207 96639419 -47147036 - L2 LINE L2 0 3272 3059 398 212 51 59 chr12 96640557 96640675 -47145780 + MIR SINE MIR 146 262 0 1160 162 0 0 chr12 96640953 96641132 -47145323 + AluJb SINE Alu 134 312 0 582 226 17 89 chr12 96641827 96641895 -47144560 - MIR SINE MIR 0 262 191 2458 87 3 0 chr12 96641895 96642206 -47144249 - AluSp SINE Alu -1 312 1 582 226 17 89 chr12 96642206 96642372 -47144083 - MIR SINE MIR -71 191 45 558 225 72 49 chr12 96642823 96643191 -47143264 - L1MEc LINE L1 -3806 2409 2053 232 191 106 32 chr12 96643289 96643383 -47143072 - L1 LINE L1 -1312 4834 4734 244 257 178 14 chr12 96643557 96643833 -47142622 - L1 LINE L1 -1526 4620 4300 411 266 164 29 chr12 96644453 96644728 -47141727 + L1 LINE L1 2185 2496 -3650 842 179 0 0 chr12 96644840 96644963 -47141492 - FLAM_C SINE Alu -20 123 1 936 249 115 16 chr12 96645072 96645438 -47141017 + L2 LINE L2 1627 2028 -1286 861 231 73 46 chr12 96645447 96645815 -47140640 - MER69 DNA AcHobo 0 2526 2149 196 250 0 50 chr12 96645848 96645908 -47140547 + L2 LINE L2 3014 3070 -243 963 204 26 163 chr12 96645927 96646382 -47140073 + L2 LINE L2 2921 3313 0 651 291 111 72 chr12 96646477 96647169 -47139286 + L1 LINE L1 2850 3568 -2578 27 29 0 0 chr12 96647646 96647680 -47138775 + AT_rich Low_complexity Low_complexity 1 34 0 2346 88 6 6 chr12 96647837 96648180 -47138275 + HSMAR2 DNA Mariner 3 345 -957 675 216 8 0 chr12 96648180 96648305 -47138150 + FLAM_A SINE Alu 1 126 -16 5857 123 22 7 chr12 96648306 96649256 -47137199 + HSMAR2 DNA Mariner 338 1301 -1 691 348 87 14 chr12 96649278 96649833 -47136622 + L1 LINE L1 4015 4609 -1537 30 45 0 0 chr12 96649855 96649899 -47136556 + AT_rich Low_complexity Low_complexity 1 44 0 358 257 28 2 chr12 96651664 96651758 -47134697 - MER5A DNA MER1_type -78 100 3 299 113 0 19 chr12 96651758 96651795 -47134660 - MLT2B1 LTR ERVL -3 517 481 279 0 0 0 chr12 96651795 96651826 -47134629 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 351 0 0 0 chr12 96651825 96651864 -47134591 + (GA)n Simple_repeat Simple_repeat 2 40 0 299 113 0 19 chr12 96651826 96651879 -47134576 - MLT2B1 LTR ERVL -39 481 466 201 39 0 0 chr12 96651929 96651955 -47134500 + (TTG)n Simple_repeat Simple_repeat 2 27 0 437 139 194 56 chr12 96651968 96652076 -47134379 - AluSg SINE Alu -187 123 1 1954 167 63 54 chr12 96652079 96652540 -47133915 - MLT2B1 LTR ERVL -50 470 6 769 277 45 10 chr12 96652612 96652719 -47133736 - MIR SINE MIR -2 260 158 2045 152 11 14 chr12 96652719 96653068 -47133387 - MER7A DNA MER2_type 0 346 1 769 277 45 10 chr12 96653068 96653162 -47133293 - MIR SINE MIR -104 158 52 186 118 0 0 chr12 96653440 96653474 -47132981 + (A)n Simple_repeat Simple_repeat 1 34 0 1606 187 43 7 chr12 96654244 96654543 -47131912 + AluJb SINE Alu 1 310 -2 2443 67 0 3 chr12 96655422 96655719 -47130736 + AluY SINE Alu 1 296 -15 1033 161 0 17 chr12 96656504 96656678 -47129777 - AluY SINE Alu -14 297 127 24 0 0 0 chr12 96657234 96657258 -47129197 + AT_rich Low_complexity Low_complexity 1 24 0 620 255 94 35 chr12 96658186 96658472 -47127983 - MER46C DNA MER2_type -13 325 23 276 313 55 31 chr12 96658483 96658611 -47127844 - MIR SINE MIR -108 154 24 325 209 26 52 chr12 96658846 96658961 -47127494 + GA-rich Low_complexity Low_complexity 4 115 0 2177 120 0 3 chr12 96659019 96659310 -47127145 + AluSc SINE Alu 1 290 -19 186 211 0 0 chr12 96660268 96660306 -47126149 + MIR SINE MIR 222 259 -3 21 0 0 0 chr12 96660362 96660383 -47126072 + AT_rich Low_complexity Low_complexity 1 21 0 706 159 0 6 chr12 96660529 96660781 -47125674 + AluJo SINE Alu 1 299 -13 739 215 82 155 chr12 96663022 96663436 -47123019 + L2 LINE L2 2925 3308 -5 196 373 15 0 chr12 96663486 96663553 -47122902 - L2 LINE L2 -93 3179 3112 496 287 31 7 chr12 96663626 96663819 -47122636 + MIR SINE MIR 45 241 -21 265 226 0 0 chr12 96665124 96665186 -47121269 + L1ME3 LINE L1 6020 6081 -81 2214 107 3 49 chr12 96665343 96665670 -47120785 + AluSx SINE Alu 1 312 0 315 244 24 0 chr12 96666038 96666120 -47120335 - MER94 DNA DNA -34 100 17 555 323 108 50 chr12 96666199 96666617 -47119838 + L2 LINE L2 2831 3272 0 188 237 0 17 chr12 96667513 96667572 -47118883 + MIR SINE MIR 165 222 -40 225 0 0 0 chr12 96667893 96667918 -47118537 + (CA)n Simple_repeat Simple_repeat 2 26 0 347 211 148 31 chr12 96668028 96668156 -47118299 - MIR SINE MIR -113 149 7 624 258 29 57 chr12 96668324 96668533 -47117922 + MIR SINE MIR 1 203 -59 246 228 172 28 chr12 96669198 96669343 -47117112 - Charlie7 DNA MER1_type -1 2611 2446 21 0 0 0 chr12 96673738 96673759 -47112696 + AT_rich Low_complexity Low_complexity 1 21 0 323 321 70 70 chr12 96675062 96675420 -47111035 - L1M2 LINE L1 -5831 1018 661 21 0 0 0 chr12 96676689 96676710 -47109745 + AT_rich Low_complexity Low_complexity 1 21 0 2392 90 0 0 chr12 96678089 96678389 -47108066 - AluSx SINE Alu -12 300 1 213 65 0 0 chr12 96679444 96679475 -47106980 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1802 139 4 7 chr12 96679479 96679752 -47106703 - AluJb SINE Alu -40 272 1 280 315 45 0 chr12 96679759 96679870 -47106585 - MIR SINE MIR -70 192 77 219 260 26 39 chr12 96679903 96679980 -47106475 + L3b LINE CR1 1393 1468 -115 2517 55 0 3 chr12 96680655 96680967 -47105488 + AluY SINE Alu 1 311 0 1721 112 0 112 chr12 96681132 96681455 -47105000 - AluJb SINE Alu -15 287 1 563 233 17 8 chr12 96681498 96681618 -47104837 + MER5A DNA MER1_type 1 121 -68 1421 76 14 9 chr12 96681696 96681907 -47104548 + L1MA4 LINE L1 5676 5887 -413 1922 183 9 21 chr12 96681952 96682378 -47104077 + L1MA4 LINE L1 5874 6294 -6 2372 73 3 13 chr12 96682384 96682684 -47103771 + AluY SINE Alu 1 297 -14 1468 102 0 39 chr12 96683463 96683669 -47102786 - AluY SINE Alu -10 301 104 1751 189 10 22 chr12 96683864 96684266 -47102189 + L1MA4 LINE L1 5874 6270 -30 1229 88 6 6 chr12 96684266 96684436 -47102019 + AluY SINE Alu 131 300 -11 2133 120 3 0 chr12 96684782 96685073 -47101382 - AluSx SINE Alu -20 292 1 336 247 27 0 chr12 96685214 96685287 -47101168 - MER2 DNA MER2_type -1 344 270 1740 151 60 0 chr12 96685292 96685577 -47100878 + AluJb SINE Alu 6 307 -5 209 130 0 43 chr12 96685586 96685632 -47100823 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1080 168 5 14 chr12 96685638 96685715 -47100740 - MER2 DNA MER2_type -139 206 130 1596 185 48 9 chr12 96685715 96686050 -47100405 + MER7A DNA MER2_type 1 346 0 1080 168 5 14 chr12 96686050 96686180 -47100275 - MER2 DNA MER2_type -215 130 1 1425 208 121 14 chr12 96686207 96686620 -47099835 + LTR48 LTR ERV1 1 457 -330 272 239 109 22 chr12 96686642 96686734 -47099721 + LTR48B LTR ERV1 386 485 -159 2248 216 93 75 chr12 96686734 96687563 -47098892 + MER21B LTR ERV1 1 844 -19 512 211 109 7 chr12 96687588 96687735 -47098720 + LTR48B LTR ERV1 481 642 -2 1304 219 25 19 chr12 96688173 96688539 -47097916 - L1MB8 LINE L1 0 6178 5811 976 120 0 0 chr12 96689844 96689977 -47096478 + FLAM_C SINE Alu 1 133 0 801 134 0 9 chr12 96690026 96690138 -47096317 - AluJb SINE Alu -115 197 87 183 80 0 0 chr12 96690328 96690353 -47096102 + (A)n Simple_repeat Simple_repeat 1 25 0 2316 94 16 0 chr12 96690478 96690785 -47095670 - AluSx SINE Alu 0 312 1 404 293 162 28 chr12 96690879 96691169 -47095286 - L2 LINE L2 -4 3309 2981 234 351 52 39 chr12 96691292 96691446 -47095009 - L2 LINE L2 -470 2844 2689 2072 107 48 0 chr12 96691450 96691741 -47094714 + AluSx SINE Alu 1 305 -7 396 205 0 12 chr12 96691960 96692043 -47094412 - MER58A DNA MER1_type -11 213 132 4619 139 37 1 chr12 96692071 96692861 -47093594 - L1PB4 LINE L1 -7 6149 5332 185 0 0 39 chr12 96692862 96692888 -47093567 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 971 93 14 0 chr12 96692888 96693028 -47093427 - L1PA11 LINE L1 -26 6148 6007 * 5421 181 25 18 chr12 96693022 96693033 -47093422 - L1PB4 LINE L1 -814 5342 5333 2248 109 0 26 chr12 96693033 96693344 -47093111 - AluSx SINE Alu -8 304 2 1940 124 27 17 chr12 96693348 96693646 -47092809 - AluJb SINE Alu -11 301 1 5421 181 25 18 chr12 96693646 96694885 -47091570 - L1PB4 LINE L1 -825 5331 4078 526 222 95 0 chr12 96694915 96695041 -47091414 - MER58A DNA MER1_type 0 139 2 191 36 36 0 chr12 96695425 96695453 -47091002 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 283 277 30 10 chr12 96696370 96696471 -47089984 + Charlie4 DNA MER1_type 1834 1936 -25 279 0 0 0 chr12 96696471 96696502 -47089953 + (CA)n Simple_repeat Simple_repeat 2 32 0 271 217 0 50 chr12 96696518 96696578 -47089877 + L2 LINE L2 3255 3311 -2 405 261 22 0 chr12 96696860 96696952 -47089503 + L2 LINE L2 3178 3271 -1 2026 170 5 24 chr12 96697924 96698294 -47088161 - MLT1A1 LTR MaLR -2 363 1 26 50 0 0 chr12 96699067 96699107 -47087348 + AT_rich Low_complexity Low_complexity 1 40 0 314 304 129 20 chr12 96699159 96699462 -47086993 + L1MC/D LINE L1 5312 5647 -474 292 245 44 48 chr12 96699526 96699781 -47086674 + L1MC/D LINE L1 5653 5905 -344 189 0 0 0 chr12 96700406 96700427 -47086028 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 739 71 10 0 chr12 96700432 96700530 -47085925 - HY3 scRNA scRNA -2 99 1 1750 136 16 55 chr12 96701868 96702176 -47084279 - AluJb SINE Alu -16 296 1 2134 124 0 10 chr12 96703025 96703339 -47083116 - AluSx SINE Alu -1 311 1 470 167 0 0 chr12 96703551 96703635 -47082820 + FLAM_A SINE Alu 59 142 0 726 159 20 99 chr12 96704612 96704813 -47081642 - MER53 DNA DNA 0 189 5 757 167 0 8 chr12 96705062 96705194 -47081261 - FLAM_A SINE Alu -2 140 10 368 123 0 15 chr12 96705217 96705282 -47081173 + (TTTC)n Simple_repeat Simple_repeat 4 67 0 1825 173 3 7 chr12 96705285 96705585 -47080870 - AluJb SINE Alu -13 299 1 1548 179 22 42 chr12 96706299 96706439 -47080016 + AluJo SINE Alu 3 144 -168 2844 140 32 94 chr12 96706439 96707091 -47079364 + LTR9 LTR ERV1 1 612 0 1548 179 22 42 chr12 96707091 96707262 -47079193 + AluJo SINE Alu 144 308 -4 558 202 8 57 chr12 96707534 96707658 -47078797 + AluJo/FLAM SINE Alu 1 118 -194 1727 140 81 4 chr12 96707658 96707929 -47078526 - AluSg SINE Alu -16 294 3 22 35 0 0 chr12 96708067 96708096 -47078359 + AT_rich Low_complexity Low_complexity 1 29 0 1844 179 0 0 chr12 96709159 96709460 -47076995 + AluJb SINE Alu 2 302 -10 897 236 164 11 chr12 96709697 96709977 -47076478 + LTR48 LTR ERV1 1 323 -464 807 206 0 40 chr12 96709981 96710156 -47076299 - AluJb SINE Alu -8 304 137 994 181 91 80 chr12 96710156 96710542 -47075913 + LTR48B LTR ERV1 241 644 0 1082 250 74 59 chr12 96710563 96710739 -47075716 + MLT1C LTR MaLR 1 173 -294 1743 179 19 22 chr12 96710739 96711052 -47075403 + AluJo SINE Alu 1 312 0 1082 250 74 59 chr12 96711052 96711335 -47075120 + MLT1C LTR MaLR 173 467 0 6554 138 22 24 chr12 96711431 96711620 -47074835 - Tigger1 DNA MER2_type -1 2417 2229 2271 101 3 0 chr12 96711620 96711916 -47074539 - AluSx SINE Alu -15 297 1 6554 138 22 24 chr12 96711916 96712920 -47073535 - Tigger1 DNA MER2_type -189 2229 1226 925 164 11 11 chr12 96712933 96713116 -47073339 - Tigger1 DNA MER2_type -2235 183 1 222 236 18 0 chr12 96713274 96713329 -47073126 - MIR SINE MIR -109 153 98 748 277 46 29 chr12 96713346 96713584 -47072871 - MIR SINE MIR 0 262 21 1103 269 84 61 chr12 96714821 96715374 -47071081 - MLT1E LTR MaLR 0 593 1 314 123 18 0 chr12 96715749 96715806 -47070649 + CT-rich Low_complexity Low_complexity 3 60 0 744 245 5 38 chr12 96717112 96717296 -47069159 + MER5B DNA MER1_type 1 178 0 190 258 108 21 chr12 96717681 96717774 -47068681 - MIR3 SINE MIR -13 195 95 184 338 0 15 chr12 96717847 96717915 -47068540 + MIR SINE MIR 193 259 -3 790 157 0 0 chr12 96718030 96718151 -47068304 + FLAM_A SINE Alu 1 121 -12 250 350 23 60 chr12 96718437 96718654 -47067801 - MIR SINE MIR -50 212 5 24 32 0 0 chr12 96719386 96719417 -47067038 + AT_rich Low_complexity Low_complexity 1 31 0 246 203 17 17 chr12 96719597 96719656 -47066799 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1608 169 17 31 chr12 96719860 96720150 -47066305 + AluJo SINE Alu 5 290 -22 269 75 75 12 chr12 96720152 96720232 -47066223 + (TA)n Simple_repeat Simple_repeat 2 86 0 1305 207 32 60 chr12 96720262 96720610 -47065845 + MLT1A2 LTR MaLR 37 374 0 2050 109 7 11 chr12 96720721 96721032 -47065423 + AluSq SINE Alu 1 310 0 249 254 0 0 chr12 96721406 96721461 -47064994 - L2 LINE L2 -32 3240 3186 1991 152 3 7 chr12 96721469 96721778 -47064677 - AluJb SINE Alu -4 308 1 33 0 0 0 chr12 96721779 96721812 -47064643 + AT_rich Low_complexity Low_complexity 1 33 0 296 250 75 25 chr12 96721970 96722050 -47064405 + L2 LINE L2 3182 3265 -48 297 68 0 0 chr12 96723408 96723452 -47063003 + (T)n Simple_repeat Simple_repeat 1 44 0 1540 141 111 0 chr12 96723499 96723769 -47062686 + AluSx SINE Alu 1 300 -12 1678 174 17 13 chr12 96724885 96725183 -47061272 + AluJb SINE Alu 1 299 -13 301 305 0 34 chr12 96725183 96725301 -47061154 - L1MC4 LINE L1 -1340 6702 6589 657 200 6 0 chr12 96725304 96725777 -47060678 + (TA)n Simple_repeat Simple_repeat 1 476 0 2407 77 3 13 chr12 96726002 96726312 -47060143 - AluY SINE Alu -4 307 1 2964 132 10 103 chr12 96726318 96727000 -47059455 - L1MA4 LINE L1 -6 6294 5676 563 233 17 8 chr12 96727078 96727198 -47059257 - MER5A DNA MER1_type -68 121 1 1773 164 17 13 chr12 96727241 96727539 -47058916 + AluJb SINE Alu 1 299 -13 301 305 0 34 chr12 96727539 96727657 -47058798 - L1MC4 LINE L1 -1340 6702 6589 657 198 5 0 chr12 96727660 96728283 -47058172 + (TA)n Simple_repeat Simple_repeat 1 626 0 346 148 12 86 chr12 96728298 96728379 -47058076 + HY5 scRNA scRNA 1 75 -9 210 158 0 0 chr12 96728379 96728417 -47058038 + A-rich Low_complexity Low_complexity 3 40 0 582 271 142 37 chr12 96729067 96729477 -47056978 - MLT1H1 LTR MaLR 0 555 103 1385 159 93 65 chr12 96729679 96729969 -47056486 + AluJo SINE Alu 1 298 -14 662 53 11 0 chr12 96730237 96730332 -47056123 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 386 266 148 0 chr12 96730422 96730550 -47055905 - MLT1L LTR MaLR -3 612 466 679 265 81 28 chr12 96730731 96731014 -47055441 - MLT1L LTR MaLR -315 300 3 231 284 158 56 chr12 96731189 96731404 -47055051 - MIR SINE MIR -3 259 23 318 256 0 0 chr12 96734117 96734195 -47052260 + MLT1K LTR MaLR 511 588 0 281 286 0 0 chr12 96734318 96734381 -47052074 + MIR SINE MIR 53 115 -147 1855 166 0 13 chr12 96734525 96734826 -47051629 + AluJo SINE Alu 1 297 -15 852 181 7 7 chr12 96734836 96734985 -47051470 + FRAM SINE Alu 9 157 -19 251 280 27 0 chr12 96735030 96735105 -47051350 + CT-rich Low_complexity Low_complexity 4 80 0 477 233 59 83 chr12 96735271 96735494 -47050961 - LTR16A LTR ERVL 0 457 233 22 56 0 19 chr12 96735797 96735827 -47050628 + AT_rich Low_complexity Low_complexity 1 31 -22 1745 167 0 20 chr12 96735827 96736121 -47050334 - AluJo SINE Alu -24 288 1 22 56 0 19 chr12 96736121 96736144 -47050311 + AT_rich Low_complexity Low_complexity 31 53 0 1645 156 73 47 chr12 96737367 96737668 -47048787 - AluJb SINE Alu 0 312 4 831 271 55 45 chr12 96737846 96738248 -47048207 - MLT1C LTR MaLR -3 464 59 747 249 58 5 chr12 96738297 96738502 -47047953 + MER20 DNA MER1_type 4 219 0 245 139 0 0 chr12 96738867 96738903 -47047552 + Alu SINE Alu 3 38 -261 1671 210 122 8 chr12 96738907 96739397 -47047058 - L1MC4 LINE L1 -452 7590 7045 206 184 26 0 chr12 96739414 96739452 -47047003 + MER5A DNA MER1_type 149 187 -2 * 332 315 131 0 chr12 96739452 96739578 -47046877 - MIR3 SINE MIR -65 143 1 389 326 11 0 chr12 96739614 96739709 -47046746 - MER5A DNA MER1_type -29 160 65 1534 160 67 11 chr12 96739842 96740152 -47046303 - AluJb SINE Alu 0 325 1 522 213 248 0 chr12 96740298 96740439 -47046016 - MER5A DNA MER1_type -13 176 1 2500 65 0 0 chr12 96740443 96740753 -47045702 + AluY SINE Alu 1 310 -1 570 231 148 18 chr12 96740790 96740959 -47045496 + MER58A DNA MER1_type 34 224 0 516 318 50 10 chr12 96740965 96741163 -47045292 + MIR SINE MIR 13 218 -44 1590 165 32 21 chr12 96741216 96741501 -47044954 + AluJo SINE Alu 1 288 -24 363 278 8 56 chr12 96741519 96741645 -47044810 - MER5A DNA MER1_type -22 167 48 2113 138 0 0 chr12 96741648 96741953 -47044502 - AluJb SINE Alu -7 305 1 1365 161 0 31 chr12 96742791 96743014 -47043441 + AluJo SINE Alu 87 302 -10 859 151 0 14 chr12 96743483 96743622 -47042833 - AluJo SINE Alu -175 137 1 2489 170 21 2 chr12 96744005 96744429 -47042026 + MSTB1 LTR MaLR 1 432 0 24 32 0 0 chr12 96744595 96744626 -47041829 + AT_rich Low_complexity Low_complexity 1 31 0 1618 180 7 27 chr12 96744630 96744924 -47041531 + AluJo SINE Alu 1 288 -24 1076 298 92 27 chr12 96744924 96744994 -47041461 - L2 LINE L2 -18 3295 3231 2122 124 3 10 chr12 96744994 96745308 -47041147 - AluSq SINE Alu -1 312 1 1076 298 92 27 chr12 96745308 96745862 -47040593 - L2 LINE L2 -82 3231 2626 843 259 119 14 chr12 96745890 96746183 -47040272 + MLT1J2 LTR MaLR 2 325 -125 685 324 34 14 chr12 96746233 96746526 -47039929 - L2 LINE L2 -691 2623 2325 199 268 93 0 chr12 96746558 96746619 -47039836 - MIR SINE MIR -61 147 89 1627 163 14 21 chr12 96746640 96746953 -47039502 - AluJo SINE Alu 0 312 2 4877 131 33 85 chr12 96746991 96747940 -47038515 - L1MA5A LINE L1 -10 6287 5444 1999 151 20 3 chr12 96747940 96748245 -47038210 - AluSg SINE Alu 0 310 1 4877 131 33 85 chr12 96748245 96749056 -47037399 - L1MA5A LINE L1 -853 5444 4592 2120 138 0 6 chr12 96749778 96750089 -47036366 + AluJb SINE Alu 4 312 0 2061 171 3 14 chr12 96750274 96750643 -47035812 + MLT1A1 LTR MaLR 1 365 0 234 0 0 0 chr12 96751427 96751453 -47035002 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1569 188 0 24 chr12 96751454 96751741 -47034714 - AluJb SINE Alu -32 280 1 249 83 0 0 chr12 96751771 96751807 -47034648 + (TC)n Simple_repeat Simple_repeat 2 37 0 776 175 0 28 chr12 96751821 96751964 -47034491 - AluJo SINE Alu -154 158 20 189 336 112 7 chr12 96752060 96752203 -47034252 - L2 LINE L2 -8 3264 3107 2632 45 7 0 chr12 96752219 96752528 -47033927 + AluY SINE Alu 1 311 0 848 165 8 0 chr12 96753246 96753379 -47033076 - AluJo SINE Alu -178 134 1 404 310 26 9 chr12 96754568 96754684 -47031771 - L2 LINE L2 -1 3271 3154 26 0 0 0 chr12 96754688 96754714 -47031741 + AT_rich Low_complexity Low_complexity 1 26 0 198 269 10 125 chr12 96754794 96754836 -47031619 + MIR SINE MIR 111 156 -106 1774 152 3 38 chr12 96754836 96755159 -47031296 + AluSx SINE Alu 4 316 0 198 269 10 125 chr12 96755159 96755219 -47031236 + MIR SINE MIR 156 202 -60 1726 189 3 20 chr12 96756035 96756336 -47030119 + AluJo SINE Alu 1 296 -16 1092 23 0 0 chr12 96756673 96756801 -47029654 - L1PA5 LINE L1 -7 6147 6020 364 216 41 10 chr12 96757849 96757946 -47028509 - MER112 DNA MER1_type -6 254 155 904 178 6 0 chr12 96757948 96758105 -47028350 + FAM SINE Alu 1 158 -17 25 0 0 0 chr12 96758240 96758265 -47028190 + AT_rich Low_complexity Low_complexity 1 25 0 336 111 0 0 chr12 96758455 96758509 -47027946 + (TG)n Simple_repeat Simple_repeat 2 55 0 242 261 0 0 chr12 96759035 96759100 -47027355 - MIR SINE MIR 0 262 198 2255 140 52 0 chr12 96759107 96759508 -47026947 + MSTA LTR MaLR 7 428 0 431 296 30 53 chr12 96759511 96759631 -47026824 - MIR SINE MIR -63 199 82 2264 89 4 0 chr12 96759631 96759948 -47026507 + AluSp SINE Alu 1 318 0 431 296 30 53 chr12 96759948 96759995 -47026460 - MIR SINE MIR -180 82 35 346 313 0 10 chr12 96760137 96760233 -47026222 - L2 LINE L2 0 3272 3178 926 135 0 14 chr12 96760784 96760925 -47025530 - FLAM_C SINE Alu -4 139 1 198 295 19 57 chr12 96760998 96761103 -47025352 + MIR3 SINE MIR 15 115 -93 345 270 58 29 chr12 96761476 96761613 -47024842 + MIR SINE MIR 111 251 -11 183 129 0 0 chr12 96762803 96762834 -47023621 + (TA)n Simple_repeat Simple_repeat 1 31 0 2110 71 14 14 chr12 96762888 96763206 -47023249 - AluY SINE Alu 0 318 1 822 144 0 0 chr12 96763496 96763614 -47022841 - AluSq/x SINE Alu -195 118 1 870 235 12 0 chr12 96763706 96763876 -47022579 - AluJo SINE Alu -47 265 94 2007 147 15 0 chr12 96763876 96764210 -47022245 + Tigger6a DNA MER2_type 133 471 -612 1386 207 39 9 chr12 96764343 96764677 -47021778 + MLT2D LTR ERVL 23 366 -48 441 133 0 0 chr12 96764739 96764814 -47021641 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 275 137 0 0 chr12 96764822 96764873 -47021582 - MLT2C1 LTR ERVL -8 389 349 1630 172 56 0 chr12 96765863 96766148 -47020307 - AluJb SINE Alu -11 301 1 429 229 125 10 chr12 96766265 96766411 -47020044 + MLT1F1 LTR MaLR 9 210 -339 245 163 0 0 chr12 96766433 96766482 -47019973 - L1M3 LINE L1 -365 5806 5758 1420 184 12 54 chr12 96766483 96766592 -47019863 + L1MB4 LINE L1 5771 5883 -297 869 165 0 0 chr12 96766592 96766725 -47019730 - FLAM_C SINE Alu 0 133 1 1420 184 12 54 chr12 96766725 96767050 -47019405 + L1MB4 LINE L1 5883 6162 -18 1594 215 43 8 chr12 96767169 96767537 -47018918 + MLT1F1 LTR MaLR 187 567 0 488 266 16 0 chr12 96768238 96768366 -47018089 - FLAM_A SINE Alu -3 130 1 1812 170 3 0 chr12 96768559 96768841 -47017614 + AluJo SINE Alu 5 287 -25 838 134 0 15 chr12 96768937 96769071 -47017384 - AluJb SINE Alu -180 132 1 200 350 41 49 chr12 96769245 96769368 -47017087 + MIR SINE MIR 25 146 -62 244 214 0 0 chr12 96769482 96769524 -47016931 + G-rich Low_complexity Low_complexity 1 42 0 693 224 84 39 chr12 96769984 96770118 -47016337 - MER5A DNA MER1_type -1 188 43 591 189 44 121 chr12 96770118 96770415 -47016040 - ORSL DNA AcHobo -1 274 1 693 224 84 39 chr12 96770415 96770459 -47015996 - MER5A DNA MER1_type -146 43 2 328 272 156 32 chr12 96771221 96771688 -47014767 - L1ME4a LINE L1 -24 6097 5573 21 0 0 0 chr12 96772047 96772068 -47014387 + AT_rich Low_complexity Low_complexity 1 21 0 769 293 23 4 chr12 96772381 96772637 -47013818 - MIR SINE MIR 0 262 2 1724 187 0 14 chr12 96772739 96773033 -47013422 - AluJb SINE Alu -22 290 1 257 242 30 0 chr12 96773167 96773233 -47013222 - MLT1L LTR MaLR -223 392 325 2440 157 19 0 chr12 96773837 96774252 -47012203 - Tigger6 DNA MER2_type -660 423 1 409 236 24 0 chr12 96775172 96775295 -47011160 + MER117 DNA MER1_type 44 169 -28 2038 129 10 3 chr12 96775321 96775615 -47010840 - AluSx SINE Alu -16 296 1 726 198 0 0 chr12 96775782 96775903 -47010552 - FLAM_C SINE Alu -18 125 5 211 229 42 0 chr12 96776210 96776258 -47010197 + GA-rich Low_complexity Low_complexity 4 53 0 1969 124 16 23 chr12 96776982 96777289 -47009166 + AluJb SINE Alu 1 305 -7 428 19 0 0 chr12 96777329 96777381 -47009074 + L1PA12 LINE L1 6115 6166 -2 2224 92 10 3 chr12 96777384 96777676 -47008779 - AluSq SINE Alu -17 296 3 26 30 0 0 chr12 96777680 96777713 -47008742 + AT_rich Low_complexity Low_complexity 1 33 0 958 199 202 86 chr12 96777726 96777877 -47008578 + L2 LINE L2 2888 3020 -293 2022 90 90 14 chr12 96777877 96778165 -47008290 - AluY SINE Alu -1 310 1 958 199 202 86 chr12 96778165 96778288 -47008167 + L2 LINE L2 3020 3127 -186 1739 177 9 28 chr12 96778288 96778605 -47007850 - AluJo SINE Alu -1 311 1 958 199 202 86 chr12 96778605 96778711 -47007744 + L2 LINE L2 3127 3313 0 1540 154 0 41 chr12 96778920 96779186 -47007269 - AluJb SINE Alu -24 288 34 26 0 0 0 chr12 96779219 96779245 -47007210 + AT_rich Low_complexity Low_complexity 1 26 0 2805 188 51 19 chr12 96779391 96779977 -47006478 - MER6A DNA MER2_type 0 605 1 1683 286 52 6 chr12 96780114 96780611 -47005844 - LTR33 LTR ERVL 0 521 2 1434 193 7 38 chr12 96780868 96781190 -47005265 - AluJb SINE Alu 0 317 5 486 307 119 14 chr12 96781207 96781283 -47005172 + MIR SINE MIR 18 85 -177 900 195 29 15 chr12 96781283 96781488 -47004967 - MER3 DNA MER1_type -1 208 1 486 307 119 14 chr12 96781488 96781629 -47004826 + MIR SINE MIR 85 258 -4 2182 137 0 0 chr12 96781905 96782212 -47004243 + AluSx SINE Alu 1 307 -5 357 232 65 113 chr12 96782762 96782947 -47003508 + L2 LINE L2 3111 3286 -27 1551 218 64 26 chr12 96783067 96783534 -47002921 - Charlie4a DNA MER1_type -4 504 20 378 234 140 22 chr12 96784030 96784252 -47002203 - L1ME LINE L1 -302 6213 5966 324 236 35 11 chr12 96784372 96784546 -47001909 + (TA)n Simple_repeat Simple_repeat 2 179 0 2127 118 0 30 chr12 96784550 96784855 -47001600 - AluSg SINE Alu -14 296 1 292 258 0 0 chr12 96784900 96784989 -47001466 - L1P LINE L1 -722 5429 5341 288 0 0 0 chr12 96785135 96785167 -47001288 + (TG)n Simple_repeat Simple_repeat 2 33 0 524 80 13 0 chr12 96786063 96786138 -47000317 + MADE1 DNA Mariner 1 76 -4 4472 184 13 12 chr12 96788070 96788113 -46998342 - L1PB1 LINE L1 -317 5834 5793 432 0 0 0 chr12 96788113 96788161 -46998294 + (TA)n Simple_repeat Simple_repeat 1 48 0 4472 184 13 12 chr12 96788161 96789333 -46997122 - L1PB1 LINE L1 -358 5793 4633 2360 84 3 3 chr12 96789333 96789644 -46996811 + AluY SINE Alu 1 311 0 4472 184 13 12 chr12 96789644 96790193 -46996262 - L1PB1 LINE L1 -1518 4633 4086 1544 193 30 27 chr12 96790872 96791168 -46995287 - AluJo SINE Alu -15 297 1 303 246 82 45 chr12 96792207 96792341 -46994114 - LTR16C LTR ERVL -1 490 352 6963 161 17 3 chr12 96792398 96794497 -46991958 - L1PA13 LINE L1 0 6163 4047 422 261 31 23 chr12 96794969 96795099 -46991356 + MIR SINE MIR 73 203 -59 1859 169 14 10 chr12 96795891 96796187 -46990268 - AluJb SINE Alu -15 297 1 184 247 206 0 chr12 96796323 96796396 -46990059 + MIR SINE MIR 159 246 -16 895 205 27 16 chr12 96796510 96796883 -46989572 - L1ME LINE L1 -743 5797 5484 2642 214 44 44 chr12 96796900 96797759 -46988696 - L1ME LINE L1 -1127 5413 4555 * 3290 156 45 58 chr12 96797743 96798569 -46987886 - L1ME LINE L1 -4284 2256 1442 435 262 76 14 chr12 96798788 96798933 -46987522 - MIR SINE MIR -58 204 51 430 305 30 66 chr12 96798998 96799332 -46987123 + LTR16B LTR ERVL 131 452 -12 233 139 69 14 chr12 96800449 96800521 -46985934 + (TA)n Simple_repeat Simple_repeat 2 77 0 544 200 184 0 chr12 96800541 96800666 -46985789 - MIR SINE MIR -86 176 29 401 250 290 0 chr12 96800691 96800815 -46985640 + MER5A DNA MER1_type 30 189 0 238 153 28 97 chr12 96800751 96800823 -46985632 - MER5A DNA MER1_type -114 75 9 * 1474 120 0 14 chr12 96801122 96801331 -46985124 + AluSg SINE Alu 37 242 -68 378 293 159 43 chr12 96801350 96801558 -46984897 + L3 LINE CR1 342 573 -1004 712 249 257 23 chr12 96801590 96801936 -46984519 - L2 LINE L2 -1 3312 2886 413 305 98 49 chr12 96802141 96802508 -46983947 + L3 LINE CR1 615 999 -578 253 231 124 145 chr12 96802524 96802710 -46983745 - MER5A DNA MER1_type -7 182 1 401 342 263 8 chr12 96803148 96803528 -46982927 + L3 LINE CR1 1100 1576 -1 2118 141 0 7 chr12 96804037 96804342 -46982113 - AluSx SINE Alu -9 303 1 2088 134 3 0 chr12 96804777 96805068 -46981387 - AluSx SINE Alu -20 292 1 1985 178 8 5 chr12 96805068 96805456 -46980999 - L1MC2 LINE L1 -192 6152 5764 329 294 49 25 chr12 96805465 96805628 -46980827 + MARNA DNA Mariner 243 409 -177 229 370 110 0 chr12 96805720 96805874 -46980581 - L2 LINE L2 -6 3266 3096 633 258 152 23 chr12 96806110 96806327 -46980128 - MIR SINE MIR -16 246 2 1870 151 3 63 chr12 96806485 96806802 -46979653 - AluSx SINE Alu -14 298 1 2125 129 0 0 chr12 96807248 96807543 -46978912 + AluSx SINE Alu 1 295 -17 329 317 22 50 chr12 96807950 96808130 -46978325 - L1M4 LINE L1 -1009 5137 4963 2271 80 0 33 chr12 96808390 96808692 -46977763 - AluY SINE Alu -19 292 1 27 29 0 0 chr12 96808993 96809027 -46977428 + AT_rich Low_complexity Low_complexity 1 34 0 2188 133 0 0 chr12 96809294 96809603 -46976852 + AluSx SINE Alu 1 309 -3 27 29 0 0 chr12 96809896 96809930 -46976525 + AT_rich Low_complexity Low_complexity 1 34 0 233 330 47 19 chr12 96810527 96810633 -46975822 + L2 LINE L2 3167 3275 -38 952 170 0 7 chr12 96810634 96810775 -46975680 + FRAM SINE Alu 7 146 -30 582 333 163 36 chr12 96811398 96812209 -46974246 - L2 LINE L2 -189 3083 2175 2082 123 13 10 chr12 96814972 96815281 -46971174 + AluSg SINE Alu 1 310 0 207 0 0 0 chr12 96815584 96815607 -46970848 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 411 73 0 0 chr12 96816065 96816120 -46970335 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1923 167 0 6 chr12 96816125 96816437 -46970018 - AluJb SINE Alu -2 310 1 510 247 0 0 chr12 96816450 96816547 -46969908 + FLAM_C SINE Alu 23 119 -24 257 51 26 0 chr12 96816547 96816586 -46969869 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 804 277 39 22 chr12 96816586 96816817 -46969638 + MIR SINE MIR 24 258 -4 386 274 95 60 chr12 96818103 96818271 -46968184 + MER5B DNA MER1_type 2 175 -3 212 83 0 28 chr12 96818904 96818940 -46967515 + (TTA)n Simple_repeat Simple_repeat 2 36 0 183 42 0 0 chr12 96819985 96820009 -46966446 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2261 110 0 3 chr12 96820148 96820447 -46966008 + AluSx SINE Alu 1 298 -14 642 193 96 0 chr12 96821063 96821198 -46965257 - MIR SINE MIR -51 211 64 1810 201 63 49 chr12 96821243 96821735 -46964720 + MLT1D LTR MaLR 1 499 -6 303 269 65 9 chr12 96822099 96822207 -46964248 + MIR SINE MIR 17 130 -78 781 271 84 13 chr12 96822686 96822911 -46963544 - MIR SINE MIR -9 253 13 1608 141 77 30 chr12 96823027 96823325 -46963130 + AluJb SINE Alu 1 312 0 2357 47 14 7 chr12 96823772 96824068 -46962387 - AluY SINE Alu -13 298 1 217 235 29 29 chr12 96824170 96824238 -46962217 - MIR3 SINE MIR -132 76 9 460 271 106 56 chr12 96825768 96826052 -46960403 + MLT1J2 LTR MaLR 2 299 -151 1834 219 50 61 chr12 96826146 96826667 -46959788 + MLT1F LTR MaLR 19 533 -9 208 326 109 0 chr12 96826685 96826777 -46959678 + L2 LINE L2 3194 3295 -18 365 284 20 0 chr12 96827058 96827160 -46959295 - MIR SINE MIR -36 226 123 261 0 0 0 chr12 96827701 96827730 -46958725 + (A)n Simple_repeat Simple_repeat 1 29 0 2389 25 42 0 chr12 96828889 96829173 -46957282 + AluY SINE Alu 1 296 -15 2006 145 6 25 chr12 96829181 96829531 -46956924 + AluJo SINE Alu 1 344 0 27 0 0 0 chr12 96830074 96830101 -46956354 + AT_rich Low_complexity Low_complexity 1 27 0 776 257 163 34 chr12 96830292 96830704 -46955751 + LTR16C LTR ERVL 7 471 -20 199 399 68 0 chr12 96830965 96831098 -46955357 + L2 LINE L2 2324 2465 -849 181 129 0 0 chr12 96831085 96831116 -46955339 - L3 LINE CR1 -596 981 951 * 613 103 0 31 chr12 96832405 96832546 -46953909 - AluSp/q SINE Alu 0 313 202 186 342 66 0 chr12 96832607 96832683 -46953772 + L2 LINE L2 3145 3225 -47 1465 135 164 0 chr12 96832784 96833028 -46953427 - AluJb SINE Alu -28 284 1 241 282 0 105 chr12 96833033 96833157 -46953298 + L2 LINE L2 3156 3266 -6 875 155 23 35 chr12 96835085 96835251 -46951204 - MER58A DNA MER1_type -15 209 46 257 200 0 0 chr12 96835251 96835296 -46951159 + Alu SINE Alu 1 45 -257 1691 177 7 10 chr12 96835465 96835753 -46950702 - AluSx SINE Alu -25 287 1 1300 99 124 13 chr12 96835753 96835986 -46950469 + MSTA LTR MaLR 170 428 0 393 258 98 0 chr12 96836375 96836497 -46949958 + MIR SINE MIR 20 152 -64 226 412 24 24 chr12 96837076 96837331 -46949124 + L2 LINE L2 2395 2649 -665 237 386 79 45 chr12 96837486 96837753 -46948702 + L2 LINE L2 2842 3117 -155 184 294 44 15 chr12 96837791 96837859 -46948596 + L2 LINE L2 3201 3270 -2 378 243 97 10 chr12 96838142 96838245 -46948210 - L2 LINE L2 -345 2968 2857 1621 169 16 111 chr12 96838245 96838595 -46947860 + MLT1B LTR MaLR 1 383 -7 2134 128 0 0 chr12 96838595 96838876 -46947579 + AluSg SINE Alu 1 281 -29 1067 142 0 0 chr12 96838728 96838876 -46947579 + AluSg/x SINE Alu 136 326 0 388 0 0 0 chr12 96838876 96838919 -46947536 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1621 169 16 111 chr12 96838919 96838998 -46947457 + MLT1B LTR MaLR 381 390 0 360 298 25 51 chr12 96838998 96839156 -46947299 - L2 LINE L2 -452 2862 2709 326 292 58 52 chr12 96839259 96839413 -46947042 - MIR3 SINE MIR -29 179 25 181 116 23 23 chr12 96839782 96839825 -46946630 + (TA)n Simple_repeat Simple_repeat 1 43 0 476 303 72 20 chr12 96839921 96840116 -46946339 + MIR SINE MIR 47 251 -11 2030 195 68 9 chr12 96840124 96840682 -46945773 - L1MEc LINE L1 -3025 3190 2600 2274 286 45 27 chr12 96840705 96842273 -46944182 - L1MEc LINE L1 -3943 2453 857 684 292 39 8 chr12 96842348 96842605 -46943850 - L1MEc LINE L1 -5683 713 449 1349 194 60 117 chr12 96842609 96843079 -46943376 + MSTB2 LTR MaLR 15 457 0 481 287 47 43 chr12 96843079 96843333 -46943122 - L1MEc LINE L1 -5944 452 198 526 203 0 76 chr12 96843337 96843455 -46943000 - MER81 DNA DNA -3 111 3 331 246 0 0 chr12 96847704 96847765 -46938690 - L2 LINE L2 -22 3291 3231 649 286 136 59 chr12 96847766 96848471 -46937984 + L2 LINE L2 2461 3231 -82 248 0 31 0 chr12 96848471 96848503 -46937952 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 649 286 136 59 chr12 96848503 96848593 -46937862 + L2 LINE L2 3231 3313 0 25 95 0 0 chr12 96848765 96848839 -46937616 + AT_rich Low_complexity Low_complexity 1 74 0 782 172 152 44 chr12 96849329 96849579 -46936876 + LTR12 LTR ERV1 1 277 -437 326 202 40 30 chr12 96849579 96849678 -46936777 + LTR30 LTR ERV1 544 643 -79 683 125 0 0 chr12 96849679 96849783 -46936672 + LTR12 LTR ERV1 481 584 -130 3642 133 5 0 chr12 96849803 96850373 -46936082 + HERV9 LTR ERV1 58 630 -7769 1903 132 18 71 chr12 96850409 96850803 -46935652 + HERV9 LTR ERV1 630 1002 -7397 * 28331 109 7 12 chr12 96850800 96855181 -46931274 + HERV9 LTR ERV1 1164 5522 -2877 7847 107 2 10 chr12 96855182 96856368 -46930087 + HERV9 LTR ERV1 7221 8396 -3 840 160 152 44 chr12 96856371 96856621 -46929834 + LTR12 LTR ERV1 1 277 -437 343 208 0 0 chr12 96856621 96856698 -46929757 + LTR30 LTR ERV1 544 620 -102 726 169 24 0 chr12 96856698 96856822 -46929633 + LTR12 LTR ERV1 355 481 -233 1509 182 0 8 chr12 96858083 96858325 -46928130 - AluJo SINE Alu -12 300 61 447 19 0 0 chr12 96858326 96858378 -46928077 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 769 158 0 0 chr12 96858378 96858492 -46927963 - FLAM_C SINE Alu -24 119 6 25 37 0 0 chr12 96858496 96858523 -46927932 + AT_rich Low_complexity Low_complexity 1 27 0 1796 150 20 0 chr12 96858531 96858831 -46927624 - L1MC1 LINE L1 -19 6314 6009 1337 235 99 12 chr12 96858949 96859515 -46926940 + MER114 LTR ERV 33 647 -1 236 210 40 10 chr12 96859742 96859842 -46926613 + (TA)n Simple_repeat Simple_repeat 2 104 0 235 299 0 0 chr12 96860010 96860087 -46926368 + A-rich Low_complexity Low_complexity 1 77 0 205 28 0 56 chr12 96860226 96860262 -46926193 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr12 96860264 96860293 -46926162 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 * 342 98 0 0 chr12 96860292 96860343 -46926112 + (TG)n Simple_repeat Simple_repeat 2 52 0 998 110 69 0 chr12 96860350 96860523 -46925932 - MSTA LTR MaLR -243 185 1 1609 286 149 7 chr12 96861664 96862411 -46924044 + L2 LINE L2 2289 3124 -189 212 302 38 0 chr12 96862411 96862464 -46923991 + polypyrimidine Low_complexity Low_complexity 5 59 0 1551 271 41 20 chr12 96862922 96863431 -46923024 - L2 LINE L2 -978 2336 1817 258 250 0 0 chr12 96863611 96863663 -46922792 + L2 LINE L2 3217 3268 -4 219 259 0 0 chr12 96866001 96866055 -46920400 + CT-rich Low_complexity Low_complexity 3 56 0 493 275 50 33 chr12 96866092 96866274 -46920181 + MIR SINE MIR 2 186 -76 22 0 0 0 chr12 96866526 96866548 -46919907 + AT_rich Low_complexity Low_complexity 1 22 0 200 143 24 0 chr12 96867340 96867382 -46919073 + T-rich Low_complexity Low_complexity 2 44 0 213 321 69 61 chr12 96868238 96868369 -46918086 + MER5B DNA MER1_type 1 132 -46 878 287 108 12 chr12 96868400 96868869 -46917586 - MLT1H1 LTR MaLR 0 590 32 2516 114 11 3 chr12 96869031 96869392 -46917063 + THE1B LTR MaLR 1 364 0 327 25 0 0 chr12 96870185 96870225 -46916230 + (TG)n Simple_repeat Simple_repeat 2 41 0 1591 193 0 37 chr12 96870226 96870522 -46915933 - AluJb SINE Alu -27 285 1 6046 168 109 68 chr12 96870760 96870834 -46915621 - L1MC3 LINE L1 -7 7778 7708 1617 136 101 3 chr12 96870834 96871046 -46915409 - MER44D DNA MER2_type -1883 608 418 204 40 0 0 chr12 96871046 96871071 -46915384 + (TC)n Simple_repeat Simple_repeat 2 26 0 1617 136 101 3 chr12 96871071 96871166 -46915289 - MER44D DNA MER2_type -2073 418 1 6046 168 109 68 chr12 96871166 96871639 -46914816 - L1MC3 LINE L1 -77 7708 7256 267 221 15 15 chr12 96871639 96871707 -46914748 - MLT1F1 LTR MaLR -460 107 40 6046 168 109 68 chr12 96871707 96872729 -46913726 - L1MC3 LINE L1 -529 7256 6075 479 305 98 29 chr12 96872803 96872977 -46913478 - MIR SINE MIR -71 191 6 201 147 0 0 chr12 96873382 96873416 -46913039 + (A)n Simple_repeat Simple_repeat 1 34 0 919 169 77 0 chr12 96873916 96874111 -46912344 - L1MC3 LINE L1 -1361 6424 6215 245 287 76 130 chr12 96874196 96874419 -46912036 - MIR SINE MIR -6 256 46 457 302 139 33 chr12 96875365 96875580 -46910875 - MIR SINE MIR -12 250 13 261 0 0 0 chr12 96875594 96875623 -46910832 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 78 0 0 chr12 96875670 96875721 -46910734 + AT_rich Low_complexity Low_complexity 1 51 0 3601 109 23 2 chr12 96875721 96876279 -46910176 - L1PB1 LINE L1 -2 6865 6296 40946 30 23 1 chr12 96876284 96882294 -46904161 + L1PA2 LINE L1 8 6155 0 13639 186 27 8 chr12 96882293 96884919 -46901536 - L1PB1 LINE L1 -559 6308 3535 * 2813 13 0 0 chr12 96884919 96885228 -46901227 + AluY SINE Alu 1 309 -2 13639 186 27 8 chr12 96885228 96887487 -46898968 - L1PB1 LINE L1 -3332 3535 1321 4342 205 88 1 chr12 96887495 96888557 -46897898 - L1PB1 LINE L1 -5700 1163 10 906 148 20 32 chr12 96888564 96888790 -46897665 - MLT2B3 LTR ERVL -85 460 248 916 165 11 11 chr12 96888800 96888982 -46897473 - L1MD3 LINE L1 -18 7977 7796 459 125 0 0 chr12 96889214 96889286 -46897169 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 252 0 0 0 chr12 96889286 96889314 -46897141 + (TC)n Simple_repeat Simple_repeat 2 29 0 1582 163 28 17 chr12 96889315 96889603 -46896852 - AluJb SINE Alu -21 291 1 396 191 17 17 chr12 96890243 96890358 -46896097 + CT-rich Low_complexity Low_complexity 2 116 0 241 342 93 51 chr12 96890637 96890751 -46895704 + L2 LINE L2 2717 2825 -447 1673 176 31 7 chr12 96890751 96891040 -46895415 - AluJb SINE Alu -16 296 1 241 342 93 51 chr12 96891040 96891192 -46895263 + L2 LINE L2 2825 2988 -284 2164 116 14 3 chr12 96891301 96891595 -46894860 + AluSx SINE Alu 1 297 -15 213 326 121 23 chr12 96891944 96892076 -46894379 - L2 LINE L2 -273 2999 2855 * 386 252 42 17 chr12 96892059 96892178 -46894277 + MIR SINE MIR 8 129 -133 359 275 37 28 chr12 96892474 96892583 -46893872 + L2 LINE L2 3155 3264 -8 2032 199 40 75 chr12 96893041 96893613 -46892842 + MLT2B3 LTR ERVL 3 554 0 423 224 182 12 chr12 96893652 96893822 -46892633 - MIR SINE MIR -1 261 63 4430 208 58 10 chr12 96893980 96894972 -46891483 - MER45B DNA AcHobo 0 1040 1 2070 142 0 10 chr12 96895163 96895473 -46890982 + AluSx SINE Alu 1 307 -5 1532 131 63 0 chr12 96896134 96896402 -46890053 - L1MA5A LINE L1 -6 6291 6007 1880 163 0 7 chr12 96896710 96897010 -46889445 - AluSx SINE Alu -14 298 1 353 266 62 26 chr12 96897058 96897171 -46889284 - L2 LINE L2 0 3313 3197 745 202 0 0 chr12 96897257 96897376 -46889079 - FLAM_C SINE Alu -18 125 7 205 347 41 10 chr12 96897452 96897550 -46888905 - MER5A DNA MER1_type -82 107 7 467 309 52 47 chr12 96899286 96899477 -46886978 + MIR3 SINE MIR 9 200 -8 432 55 0 0 chr12 96900012 96900067 -46886388 + (TA)n Simple_repeat Simple_repeat 1 55 0 295 261 47 49 chr12 96900496 96900627 -46885828 + MIR SINE MIR 42 168 -63 405 280 147 44 chr12 96901523 96901604 -46884851 - MIR SINE MIR -1 261 190 5486 111 3 6 chr12 96901604 96902387 -46884068 - LTR17 LTR ERV1 0 780 1 405 280 147 44 chr12 96902387 96902530 -46883925 - MIR SINE MIR -72 190 14 217 280 230 0 chr12 96902761 96902861 -46883594 - L3 LINE CR1 -2 1575 1453 246 227 57 57 chr12 96903315 96903403 -46883052 + MIR SINE MIR 160 247 -15 455 239 158 94 chr12 96904474 96904804 -46881651 - HAL1 LINE L1 -1 2506 2156 26 30 0 0 chr12 96905199 96905232 -46881223 + AT_rich Low_complexity Low_complexity 1 33 0 1517 181 0 8 chr12 96905368 96905611 -46880844 - AluJo SINE Alu -11 301 61 483 18 0 0 chr12 96905612 96905668 -46880787 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 769 158 0 0 chr12 96905668 96905782 -46880673 - FLAM_C SINE Alu -24 119 6 27 0 0 0 chr12 96905786 96905813 -46880642 + AT_rich Low_complexity Low_complexity 1 27 0 1975 142 10 0 chr12 96905821 96906124 -46880331 - L1MC1 LINE L1 -19 6314 6009 1522 226 84 12 chr12 96906242 96906816 -46879639 + MER114 LTR ERV 33 647 -1 393 39 0 0 chr12 96907041 96907092 -46879363 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 198 155 35 chr12 96907796 96907912 -46878543 + L2 LINE L2 2829 2958 -355 212 344 42 0 chr12 96908041 96908137 -46878318 + L2 LINE L2 3160 3259 -13 222 37 0 0 chr12 96908137 96908164 -46878291 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 426 296 76 0 chr12 96909033 96909165 -46877290 - MER58A DNA MER1_type 0 224 83 1381 163 119 16 chr12 96909180 96909500 -46876955 - MLT1A1 LTR MaLR -12 353 1 296 316 0 0 chr12 96909501 96909580 -46876875 - MER58A DNA MER1_type -28 79 1 472 234 239 12 chr12 96909620 96909787 -46876668 - MLT1A1 LTR MaLR 0 365 161 384 291 159 33 chr12 96909988 96910170 -46876285 + MIR SINE MIR 18 222 -40 351 299 43 70 chr12 96910951 96911138 -46875317 - MIR SINE MIR -44 218 37 546 192 112 0 chr12 96913643 96913768 -46872687 - MER7A DNA MER2_type -209 137 1 258 266 5 67 chr12 96916183 96916443 -46870012 + CT-rich Low_complexity Low_complexity 1 243 0 299 82 0 41 chr12 96917152 96917201 -46869254 + THE1C LTR MaLR 1 47 -328 5450 82 3 0 chr12 96917201 96917932 -46868523 + THE1A-int LTR MaLR 842 1574 -6 2320 114 11 8 chr12 96917940 96918291 -46868164 + THE1A LTR MaLR 4 355 0 1475 161 86 22 chr12 96919076 96919373 -46867082 + AluJb SINE Alu 1 314 0 1423 146 50 42 chr12 96920031 96920100 -46866355 + AluJo SINE Alu 50 117 -195 210 71 0 0 chr12 96920100 96920128 -46866327 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1423 146 50 42 chr12 96920128 96920319 -46866136 + AluJo SINE Alu 117 312 0 1229 297 129 45 chr12 96920613 96921975 -46864480 - HAL1 LINE L1 -1030 1477 2 238 98 0 24 chr12 96922008 96922049 -46864406 + MER53 DNA DNA 2 41 -148 2320 183 44 10 chr12 96922050 96922532 -46863923 - MLT1D LTR MaLR -5 500 3 359 172 279 0 chr12 96922532 96922653 -46863802 + MER53 DNA DNA 34 188 -1 332 329 71 26 chr12 96922654 96922809 -46863646 - MIR SINE MIR -78 184 23 282 241 13 13 chr12 96922811 96922890 -46863565 + CT-rich Low_complexity Low_complexity 2 80 0 2181 154 8 6 chr12 96922900 96923264 -46863191 + MLT1A1 LTR MaLR 1 365 0 736 266 47 5 chr12 96923778 96923992 -46862463 - MER58A DNA MER1_type 0 224 2 1940 163 0 3 chr12 96924837 96925131 -46861324 - AluSx SINE Alu -18 294 2 276 319 60 17 chr12 96925668 96925784 -46860671 + MIR SINE MIR 2 122 -140 515 251 79 75 chr12 96925808 96926168 -46860287 - MLT1K LTR MaLR -4 584 173 3726 175 40 36 chr12 96926168 96926950 -46859505 + LTR1 LTR ERV1 1 785 0 515 251 79 75 chr12 96926950 96927058 -46859397 - MLT1K LTR MaLR -415 173 67 205 346 86 0 chr12 96927100 96927181 -46859274 + MER91C DNA MER1_type 25 112 -28 570 325 26 54 chr12 96927808 96928236 -46858219 - MLT1J LTR MaLR -94 417 2 416 261 18 0 chr12 96929236 96929347 -46857108 + MER94 DNA DNA 1 113 -21 435 255 72 13 chr12 96929993 96930146 -46856309 - MLT1L LTR MaLR -289 326 165 1735 221 0 0 chr12 96930489 96930797 -46855658 - AluSx SINE Alu -4 308 1 351 240 27 23 chr12 96931556 96931723 -46854732 + MIR SINE MIR 21 218 -44 273 264 14 0 chr12 96933832 96933904 -46852551 + (TA)n Simple_repeat Simple_repeat 1 73 0 346 309 123 6 chr12 96934415 96934531 -46851924 + MIR SINE MIR 4 146 -116 180 0 0 0 chr12 96934531 96934551 -46851904 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 346 309 123 6 chr12 96934551 96934596 -46851859 + MIR SINE MIR 146 184 -78 327 293 85 55 chr12 96934620 96934784 -46851671 - MIR SINE MIR -15 247 79 198 0 0 0 chr12 96934791 96934813 -46851642 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 412 89 63 51 chr12 96934828 96934907 -46851548 - L1PA16 LINE L1 -6 6160 6081 2205 107 0 10 chr12 96936442 96936740 -46849715 - AluSx SINE Alu -17 295 1 299 379 58 6 chr12 96936741 96936915 -46849540 + L2 LINE L2 2854 3036 -236 523 209 0 0 chr12 96936920 96937025 -46849430 - MER5B DNA MER1_type -73 105 1 577 179 103 0 chr12 96937033 96937150 -46849305 - MER5A DNA MER1_type 0 189 61 227 91 0 45 chr12 96937153 96937197 -46849258 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 706 140 35 21 chr12 96937312 96937441 -46849014 - L1MA8 LINE L1 -2 6289 6156 243 0 0 0 chr12 96937441 96937468 -46848987 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 706 140 35 21 chr12 96937468 96937481 -46848974 - L1MA8 LINE L1 -135 6156 6145 416 183 0 0 chr12 96937481 96937552 -46848903 - MER5A DNA MER1_type -118 71 1 259 354 194 7 chr12 96937595 96937739 -46848716 + L2 LINE L2 3102 3272 0 783 152 0 0 chr12 96939171 96939349 -46847106 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 1464 214 34 18 chr12 96939431 96939829 -46846626 - Zaphod DNA AcHobo 0 4010 535 1058 198 33 38 chr12 96939821 96940189 -46846266 - Zaphod DNA AcHobo -3039 992 627 * 1309 271 5 32 chr12 96940179 96940559 -46845896 - Zaphod DNA AcHobo -3615 416 47 620 304 154 4 chr12 96940977 96941204 -46845251 - MIR SINE MIR 0 262 2 423 284 178 6 chr12 96941504 96941673 -46844782 - MIR SINE MIR -6 256 59 341 300 87 33 chr12 96942825 96942975 -46843480 - L2 LINE L2 -5 3267 3110 187 351 0 0 chr12 96943094 96943171 -46843284 - L2 LINE L2 -1211 2103 2027 1566 238 147 10 chr12 96943554 96944017 -46842438 + MLT1F LTR MaLR 10 542 0 3289 217 47 26 chr12 96944042 96944849 -46841606 - L1ME2 LINE L1 -10 6154 5331 338 143 0 0 chr12 96945140 96945189 -46841266 + MER63 DNA MER1_type 2 50 -880 23 0 0 0 chr12 96945189 96945212 -46841243 + AT_rich Low_complexity Low_complexity 1 23 0 358 275 83 80 chr12 96945298 96945521 -46840934 - L1ME2 LINE L1 -1767 4379 4153 1545 159 53 43 chr12 96945521 96945823 -46840632 - AluSg SINE Alu 0 310 6 358 275 83 80 chr12 96945823 96946035 -46840420 - L1ME2 LINE L1 -1993 4153 3943 536 243 36 14 chr12 96946047 96946187 -46840268 + MER63 DNA MER1_type 675 817 -245 488 246 57 8 chr12 96946376 96946498 -46839957 - MER5B DNA MER1_type -1 177 50 216 219 0 0 chr12 96946550 96946591 -46839864 - MER5B DNA MER1_type -137 41 1 364 252 261 0 chr12 96947068 96947187 -46839268 - MER5A DNA MER1_type -9 180 31 276 321 54 43 chr12 96947529 96947679 -46838776 - MIR3 SINE MIR -72 136 5 432 0 0 0 chr12 96947772 96947820 -46838635 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2127 115 3 0 chr12 96947822 96948108 -46838347 - AluSx SINE Alu -25 287 1 2158 191 82 0 chr12 96948234 96948626 -46837829 + MSTA LTR MaLR 1 424 -4 237 207 37 98 chr12 96948645 96948663 -46837792 - L2 LINE L2 -8 3264 3246 2055 127 31 0 chr12 96948663 96948954 -46837501 + AluSq SINE Alu 1 300 -13 237 207 37 98 chr12 96948954 96949017 -46837438 - L2 LINE L2 -26 3246 3188 907 268 17 8 chr12 96949242 96949477 -46836978 - MIR SINE MIR -10 252 16 249 232 246 11 chr12 96950670 96950768 -46835687 + MIR SINE MIR 12 129 -79 407 190 25 0 chr12 96950917 96950996 -46835459 - MIR SINE MIR -112 150 70 237 297 40 14 chr12 96951931 96952005 -46834450 - L2 LINE L2 -5 3267 3192 826 270 33 25 chr12 96952125 96952366 -46834089 + MIR SINE MIR 1 243 -19 617 147 0 0 chr12 96952447 96952542 -46833913 + L1PA10 LINE L1 6070 6164 -4 274 301 59 48 chr12 96952618 96952804 -46833651 - L2 LINE L2 -354 2960 2773 1628 188 0 17 chr12 96953306 96953598 -46832857 - AluJb SINE Alu -25 287 1 207 234 234 39 chr12 96953666 96953743 -46832712 + MIR SINE MIR 6 97 -165 634 181 14 0 chr12 96953959 96954103 -46832352 + GA-rich Low_complexity Low_complexity 2 147 0 330 246 0 0 chr12 96957182 96957243 -46829212 - L2 LINE L2 -22 3291 3231 646 282 131 61 chr12 96957244 96957949 -46828506 + L2 LINE L2 2461 3231 -82 248 0 31 0 chr12 96957949 96957981 -46828474 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 646 282 131 61 chr12 96957981 96958071 -46828384 + L2 LINE L2 3231 3313 0 25 95 0 0 chr12 96958243 96958317 -46828138 + AT_rich Low_complexity Low_complexity 1 74 0 226 93 47 47 chr12 96958807 96958850 -46827605 + LTR30 LTR ERV1 1 43 -679 558 184 184 53 chr12 96958850 96959057 -46827398 + LTR12 LTR ERV1 44 277 -437 359 202 40 30 chr12 96959057 96959156 -46827299 + LTR30 LTR ERV1 544 643 -79 729 125 0 0 chr12 96959157 96959261 -46827194 + LTR12 LTR ERV1 481 584 -130 31337 122 19 17 chr12 96959281 96964655 -46821800 + HERV9 LTR ERV1 58 5522 -2877 8462 105 2 10 chr12 96964656 96965842 -46820613 + HERV9 LTR ERV1 7221 8396 -3 850 140 124 27 chr12 96965845 96966032 -46820423 + LTR12 LTR ERV1 1 259 -455 372 190 48 69 chr12 96966076 96966206 -46820249 + LTR30 LTR ERV1 375 477 -92 619 122 33 0 chr12 96966206 96966296 -46820159 + LTR12 LTR ERV1 389 481 -233 1560 201 30 79 chr12 96967510 96967938 -46818517 - MLT1C LTR MaLR 0 467 61 217 247 113 41 chr12 96968301 96968398 -46818057 + MER5A DNA MER1_type 9 112 -77 440 264 157 30 chr12 96968650 96968847 -46817608 - MIR SINE MIR -39 223 2 2548 120 83 10 chr12 96969779 96970178 -46816277 - MSTA LTR MaLR 0 428 1 451 283 43 37 chr12 96970368 96970535 -46815920 - MIR SINE MIR -62 146 33 2001 232 132 40 chr12 96971006 96971822 -46814633 - L1MCb LINE L1 -5154 891 1 211 278 237 21 chr12 96972531 96972628 -46813827 - MER5A DNA MER1_type -6 183 66 905 159 0 14 chr12 96972628 96972773 -46813682 - FLAM_C SINE Alu 0 143 1 366 222 0 0 chr12 96972773 96972845 -46813610 - MER5A DNA MER1_type -114 75 4 411 113 0 0 chr12 96973393 96973455 -46813000 + (TGG)n Simple_repeat Simple_repeat 1 62 0 184 346 0 0 chr12 96973472 96973550 -46812905 + MIR SINE MIR 160 237 -25 436 275 82 50 chr12 96974222 96974444 -46812011 + MIR SINE MIR 30 256 -6 440 223 0 8 chr12 96974625 96974755 -46811700 + CT-rich Low_complexity Low_complexity 1 129 0 215 185 15 92 chr12 96976637 96976702 -46809753 + MIR SINE MIR 110 169 -93 200 281 18 18 chr12 96977053 96977110 -46809345 - L3 LINE CR1 0 1577 1521 4198 118 121 126 chr12 96977769 96979175 -46807280 - pTR5 LTR ERV1 0 2438 743 478 318 4 54 chr12 96979175 96979268 -46807187 + L3 LINE CR1 984 1080 -497 2396 94 7 0 chr12 96979268 96979575 -46806880 + AluY SINE Alu 1 309 -2 478 318 4 54 chr12 96979575 96979720 -46806735 + L3 LINE CR1 1080 1210 -367 291 241 191 22 chr12 96979821 96979984 -46806471 - MIR SINE MIR -7 255 8 380 353 7 40 chr12 96979995 96980145 -46806310 + L3 LINE CR1 1342 1486 -91 778 267 57 47 chr12 96980150 96980450 -46806005 + MLT1J2 LTR MaLR 5 307 -143 2855 213 29 32 chr12 96981329 96981831 -46804624 - MLT1E2 LTR MaLR 0 626 125 1732 189 10 0 chr12 96981831 96982128 -46804327 - AluSx SINE Alu -12 300 1 2855 213 29 32 chr12 96982128 96982253 -46804202 - MLT1E2 LTR MaLR -501 125 1 322 292 22 51 chr12 96982690 96982763 -46803692 - MER5A DNA MER1_type 0 189 120 1345 201 18 91 chr12 96982763 96983157 -46803298 + MLT1A1 LTR MaLR 1 365 0 322 292 22 51 chr12 96983157 96983220 -46803235 - MER5A DNA MER1_type -69 120 57 284 250 0 31 chr12 96983208 96983272 -46803183 + L2 LINE L2 3209 3270 -2 * 1287 181 121 30 chr12 96983278 96983543 -46802912 - AluJo SINE Alu -22 290 2 758 278 51 5 chr12 96984255 96984471 -46801984 + MIR SINE MIR 16 241 -21 298 372 16 8 chr12 96985054 96985175 -46801280 - MIR SINE MIR -66 142 21 1654 147 30 8 chr12 96985557 96985861 -46800594 - AluJb SINE Alu 0 323 14 226 268 7 22 chr12 96986527 96986623 -46799832 + GA-rich Low_complexity Low_complexity 1 94 0 228 189 19 19 chr12 96987535 96987588 -46798867 + MIR SINE MIR 142 194 -68 749 177 0 57 chr12 96988096 96988237 -46798218 - FLAM_C SINE Alu 0 133 1 2400 252 7 23 chr12 96988918 96989473 -46796982 + MLT2B3 LTR ERVL 1 546 -8 238 375 0 0 chr12 96989565 96989645 -46796810 + MER81 DNA DNA 1 80 -34 1219 133 35 5 chr12 96989664 96989881 -46796574 + L1MA5A LINE L1 5601 5823 -474 655 180 18 0 chr12 96989889 96990000 -46796455 + FLAM_A SINE Alu 8 120 -22 2807 126 2 24 chr12 96990024 96990516 -46795939 + L1MA5A LINE L1 5814 6294 -3 23 33 0 0 chr12 96990522 96990552 -46795903 + AT_rich Low_complexity Low_complexity 1 30 0 948 177 116 5 chr12 96990932 96991094 -46795361 - AluJo SINE Alu -7 305 116 775 38 70 0 chr12 96991094 96991251 -46795204 + (TA)n Simple_repeat Simple_repeat 2 169 0 948 177 116 5 chr12 96991251 96991286 -46795169 - AluJo SINE Alu -196 116 86 305 218 26 0 chr12 96992602 96992680 -46793775 - MER116 DNA Mariner 0 80 1 2296 173 64 52 chr12 96993514 96993958 -46792497 + MLT2B1 LTR ERVL 1 453 -67 1507 170 137 0 chr12 96993958 96994264 -46792191 - MER7A DNA MER2_type 0 346 1 2296 173 64 52 chr12 96994264 96994333 -46792122 + MLT2B1 LTR ERVL 453 520 0 1356 262 40 9 chr12 96994655 96995461 -46790994 + MER97a DNA MER1_type? 1 880 -14 416 270 65 43 chr12 96995632 96995817 -46790638 - MIR SINE MIR -38 224 36 213 154 0 0 chr12 96996024 96996063 -46790392 + A-rich Low_complexity Low_complexity 1 39 0 527 194 0 0 chr12 96996412 96996505 -46789950 + MER5A DNA MER1_type 14 106 -83 528 234 40 12 chr12 96996617 96996773 -46789682 + MIR SINE MIR 21 184 -37 210 139 0 0 chr12 96997308 96997344 -46789111 + (TG)n Simple_repeat Simple_repeat 1 36 0 2249 118 0 0 chr12 96998174 96998470 -46787985 + AluSx SINE Alu 4 299 -13 2383 74 0 0 chr12 96999722 97000021 -46786434 + AluY SINE Alu 2 300 -11 579 224 44 51 chr12 97000077 97000334 -46786121 + MIR SINE MIR 2 222 -40 321 211 132 53 chr12 97000423 97000537 -46785918 + L2 LINE L2 3191 3313 0 273 337 41 0 chr12 97000535 97000633 -46785822 + L3 LINE CR1 1471 1572 -5 * 542 112 0 11 chr12 97000716 97000805 -46785650 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 1060 77 0 27 chr12 97000806 97000989 -46785466 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 260 333 81 0 chr12 97002263 97002362 -46784093 - MIR SINE MIR -57 151 45 836 252 17 43 chr12 97002441 97002671 -46783784 - MER58A DNA MER1_type 0 224 1 755 304 46 4 chr12 97002837 97003077 -46783378 + MIR SINE MIR 8 257 -5 1079 264 104 22 chr12 97003177 97003639 -46782816 - MLT1G1 LTR MaLR 0 595 96 268 282 18 112 chr12 97003813 97003983 -46782472 - MLT1A2-int LTR MaLR -185 1186 1033 453 301 32 14 chr12 97004552 97004771 -46781684 - MLT1A2-int LTR MaLR -829 542 320 1539 116 171 10 chr12 97004994 97005286 -46781169 - MSTA LTR MaLR -89 339 1 26 30 0 0 chr12 97005878 97005911 -46780544 + AT_rich Low_complexity Low_complexity 1 33 0 231 277 117 0 chr12 97006222 97006316 -46780139 + L2 LINE L2 3150 3254 -18 654 339 62 11 chr12 97006573 97006927 -46779528 - LTR16A LTR ERVL -78 372 1 251 186 0 17 chr12 97006972 97007031 -46779424 + CT-rich Low_complexity Low_complexity 3 60 0 1267 191 9 0 chr12 97007036 97007256 -46779199 - AluJo SINE Alu -6 306 85 208 231 0 19 chr12 97008156 97008208 -46778247 + L2 LINE L2 3263 3313 0 316 241 38 0 chr12 97008240 97008319 -46778136 - Tigger5 DNA MER2_type 0 2323 2242 397 90 51 0 chr12 97008341 97008419 -46778036 + CT-rich Low_complexity Low_complexity 1 82 0 665 219 0 8 chr12 97008419 97008542 -46777913 - FLAM_C SINE Alu -19 124 3 1690 222 19 19 chr12 97008760 97009134 -46777321 - MLT1A2 LTR MaLR 0 374 1 330 303 115 12 chr12 97009981 97010146 -46776309 + MIR SINE MIR 81 262 0 320 259 53 65 chr12 97010444 97010614 -46775841 + MIR SINE MIR 81 248 -14 785 170 19 50 chr12 97010644 97010844 -46775611 + MLT1A2 LTR MaLR 1 205 -185 208 216 0 0 chr12 97010853 97010890 -46775565 + polypyrimidine Low_complexity Low_complexity 6 42 0 607 216 13 9 chr12 97010923 97011073 -46775382 + MLT1A2 LTR MaLR 236 366 -8 218 320 67 34 chr12 97011530 97011708 -46774747 - MIR3 SINE MIR -6 202 19 197 235 0 0 chr12 97012156 97012190 -46774265 - MIR SINE MIR -181 81 48 438 288 39 13 chr12 97013116 97013269 -46773186 + MIR SINE MIR 66 222 -40 609 260 29 6 chr12 97014002 97014175 -46772280 + MER5B DNA MER1_type 1 177 -1 278 236 45 89 chr12 97014202 97014282 -46772173 - L2 LINE L2 -182 3090 3019 2369 103 3 3 chr12 97014282 97014592 -46771863 - AluSx SINE Alu -2 310 1 278 236 45 89 chr12 97014592 97014668 -46771787 - L2 LINE L2 -253 3019 2941 255 204 0 0 chr12 97015458 97015512 -46770943 + GA-rich Low_complexity Low_complexity 3 56 0 226 380 18 47 chr12 97015664 97015835 -46770620 - MIR3 SINE MIR -21 187 22 400 280 73 7 chr12 97016408 97016558 -46769897 + MIR SINE MIR 77 236 -26 982 274 12 12 chr12 97016616 97016857 -46769598 - MIR SINE MIR -1 261 21 217 341 11 44 chr12 97017533 97017624 -46768831 + MIR SINE MIR 16 103 -105 374 284 80 44 chr12 97017994 97018269 -46768186 - MER102b DNA MER1_type -11 330 46 381 195 25 21 chr12 97018388 97018512 -46767943 - MER5B DNA MER1_type 0 178 2 483 18 0 0 chr12 97019578 97019634 -46766821 + (TC)n Simple_repeat Simple_repeat 2 57 0 1655 197 24 0 chr12 97020951 97021245 -46765210 + AluJo SINE Alu 1 301 -11 216 86 0 0 chr12 97021257 97021292 -46765163 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 267 353 34 8 chr12 97021421 97021540 -46764915 - L2 LINE L2 -5 3308 3187 553 195 0 76 chr12 97023037 97023155 -46763300 + MER81 DNA DNA 3 111 -3 488 293 47 43 chr12 97023159 97023412 -46763043 + L1MEc LINE L1 198 451 -5945 1321 198 60 117 chr12 97023413 97023883 -46762572 - MSTB2 LTR MaLR 0 457 15 669 296 39 8 chr12 97023887 97024144 -46762311 + L1MEc LINE L1 449 713 -5683 2417 284 46 27 chr12 97024219 97025786 -46760669 + L1MEc LINE L1 857 2453 -3943 2029 195 68 9 chr12 97025809 97026367 -46760088 + L1MEc LINE L1 2600 3190 -3025 456 308 72 20 chr12 97026375 97026570 -46759885 - MIR SINE MIR -11 251 47 181 116 23 23 chr12 97026666 97026709 -46759746 + (TA)n Simple_repeat Simple_repeat 1 43 0 326 292 58 52 chr12 97027078 97027232 -46759223 + MIR3 SINE MIR 25 179 -29 728 279 42 46 chr12 97027335 97027493 -46758962 + L2 LINE L2 2709 2867 -447 1708 159 21 108 chr12 97027493 97027568 -46758887 - MLT1B LTR MaLR 0 390 310 2146 125 0 0 chr12 97027568 97027882 -46758573 - AluSg SINE Alu 0 314 1 1708 159 21 108 chr12 97027882 97028232 -46758223 - MLT1B LTR MaLR -80 310 1 728 279 42 46 chr12 97028232 97028335 -46758120 + L2 LINE L2 2867 2969 -345 184 294 44 15 chr12 97028618 97028686 -46757769 - L2 LINE L2 -2 3270 3201 250 411 40 36 chr12 97028724 97028948 -46757507 - L2 LINE L2 -155 3117 2893 226 412 24 24 chr12 97029147 97029402 -46757053 - L2 LINE L2 -665 2649 2395 378 266 98 0 chr12 97029985 97030107 -46756348 - MIR SINE MIR -64 144 20 1354 98 107 104 chr12 97030496 97030729 -46755726 - MSTA LTR MaLR 0 428 197 1784 167 3 7 chr12 97030729 97031017 -46755438 + AluSx SINE Alu 1 287 -25 363 44 0 0 chr12 97031024 97031069 -46755386 + (CA)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 97031071 97031104 -46755351 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 * 378 91 0 0 chr12 97031103 97031158 -46755297 + (TG)n Simple_repeat Simple_repeat 2 56 0 1354 98 107 104 chr12 97031104 97031249 -46755206 - MSTA LTR MaLR -236 192 92 1234 174 126 16 chr12 97031461 97031778 -46754677 - MLT1A1 LTR MaLR -13 352 1 296 316 0 0 chr12 97031779 97031858 -46754597 - MER58A DNA MER1_type -28 79 1 472 234 239 12 chr12 97031898 97032065 -46754390 - MLT1A1 LTR MaLR 0 365 161 384 291 159 33 chr12 97032266 97032448 -46754007 + MIR SINE MIR 18 222 -40 351 299 43 70 chr12 97033227 97033414 -46753041 - MIR SINE MIR -44 218 37 546 192 112 0 chr12 97035919 97036044 -46750411 - MER7A DNA MER2_type -209 137 1 1754 155 19 0 chr12 97038881 97039190 -46747265 + L1MA6 LINE L1 5986 6300 0 21 57 0 0 chr12 97039190 97039225 -46747230 + AT_rich Low_complexity Low_complexity 1 35 0 727 176 0 24 chr12 97039282 97039407 -46747048 + FLAM_A SINE Alu 1 122 -20 207 322 35 26 chr12 97041074 97041189 -46745266 + L3 LINE CR1 695 810 -767 322 283 50 36 chr12 97041360 97041542 -46744913 - MIR SINE MIR 0 262 35 389 330 87 32 chr12 97041579 97041797 -46744658 + L3 LINE CR1 1042 1271 -306 239 317 50 10 chr12 97042200 97042301 -46744154 - L2 LINE L2 -787 2527 2423 22 0 0 0 chr12 97042498 97042520 -46743935 + AT_rich Low_complexity Low_complexity 1 22 0 245 380 9 0 chr12 97042527 97042635 -46743820 - MIR3 SINE MIR 0 208 100 252 0 0 0 chr12 97043221 97043249 -46743206 + (TA)n Simple_repeat Simple_repeat 1 28 0 220 211 0 0 chr12 97044035 97044073 -46742382 + A-rich Low_complexity Low_complexity 3 40 0 349 226 21 0 chr12 97044608 97044701 -46741754 - MLT1J1 LTR MaLR -1 445 351 258 312 140 0 chr12 97044724 97044817 -46741638 - MLT1J2 LTR MaLR -142 308 203 220 319 0 0 chr12 97046302 97046371 -46740084 + MIR SINE MIR 194 262 0 1486 215 5 62 chr12 97046445 97046813 -46739642 + MLT1A1 LTR MaLR 1 347 -18 239 312 69 0 chr12 97047934 97048047 -46738408 + MER5A DNA MER1_type 4 139 -50 1578 201 54 16 chr12 97049203 97049571 -46736884 - MLT1B LTR MaLR 0 390 9 403 269 5 113 chr12 97049675 97049746 -46736709 - MER5A DNA MER1_type 0 189 112 1490 143 106 11 chr12 97049746 97050019 -46736436 + AluJb SINE Alu 2 300 -12 403 269 5 113 chr12 97050019 97050142 -46736313 - MER5A DNA MER1_type -77 112 3 292 368 38 15 chr12 97050279 97050412 -46736043 + L2 LINE L2 3137 3272 0 2210 127 3 16 chr12 97050467 97050783 -46735672 + AluSx SINE Alu 1 312 0 205 263 30 83 chr12 97050884 97051017 -46735438 + L2 LINE L2 2857 2982 -290 244 286 152 18 chr12 97051158 97051270 -46735185 + L2 LINE L2 3179 3305 -8 364 325 57 16 chr12 97051296 97051419 -46735036 + L2 LINE L2 3136 3263 -9 21 0 0 0 chr12 97052715 97052736 -46733719 + AT_rich Low_complexity Low_complexity 1 21 0 1203 239 46 30 chr12 97052817 97053040 -46733415 + MLT1E LTR MaLR 203 436 -157 2254 160 21 8 chr12 97053040 97053422 -46733033 + MLT1B LTR MaLR 1 387 -3 1203 239 46 30 chr12 97053422 97053566 -46732889 + MLT1E LTR MaLR 436 576 -17 2022 154 33 0 chr12 97053580 97053912 -46732543 + MER7A DNA MER2_type 5 345 -1 445 240 48 0 chr12 97054395 97054520 -46731935 + MER69 DNA AcHobo 2384 2514 -12 209 30 61 0 chr12 97055047 97055080 -46731375 + T-rich Low_complexity Low_complexity 2 36 0 775 143 0 8 chr12 97055905 97056031 -46730424 + AluSq/x SINE Alu 1 125 -187 22 0 0 0 chr12 97057162 97057184 -46729271 + AT_rich Low_complexity Low_complexity 1 22 0 29 37 0 19 chr12 97057884 97057901 -46728554 + AT_rich Low_complexity Low_complexity 1 17 -36 2117 132 0 0 chr12 97057901 97058196 -46728259 - AluSx SINE Alu -17 295 1 29 37 0 19 chr12 97058196 97058232 -46728223 + AT_rich Low_complexity Low_complexity 17 53 0 292 279 48 48 chr12 97059336 97059440 -46727015 + L2 LINE L2 3178 3281 -32 610 249 109 12 chr12 97059538 97059703 -46726752 - MIR SINE MIR -27 235 55 278 349 40 6 chr12 97059962 97060137 -46726318 + MLT1L LTR MaLR 88 268 -347 233 311 61 48 chr12 97060213 97060441 -46726014 + MLT1K LTR MaLR 332 562 -26 2282 102 0 0 chr12 97060492 97060787 -46725668 + AluSg SINE Alu 1 295 -15 325 229 143 57 chr12 97061353 97061528 -46724927 + MIR SINE MIR 28 217 -45 717 227 149 56 chr12 97062278 97062706 -46723749 - MLT1J LTR MaLR -10 605 25 372 43 0 0 chr12 97062858 97062904 -46723551 + (TA)n Simple_repeat Simple_repeat 1 46 0 493 198 83 32 chr12 97064372 97064529 -46721926 + MER33 DNA MER1_type 5 169 -155 261 254 75 0 chr12 97065110 97065177 -46721278 + MIR3 SINE MIR 134 205 -3 1878 176 0 0 chr12 97065732 97066033 -46720422 + AluJb SINE Alu 1 301 -11 775 253 11 6 chr12 97066428 97066610 -46719845 - MER5A DNA MER1_type 0 189 7 210 118 0 0 chr12 97067229 97067263 -46719192 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 343 284 0 20 chr12 97067498 97067600 -46718855 + MLT1K LTR MaLR 167 266 -322 1868 151 19 45 chr12 97067607 97067919 -46718536 - AluSq SINE Alu -7 306 3 192 318 9 75 chr12 97067969 97068076 -46718379 - L2 LINE L2 -985 2329 2230 670 315 86 18 chr12 97068091 97068485 -46717970 + MLT1J1 LTR MaLR 24 444 -2 797 272 20 12 chr12 97068490 97068736 -46717719 - L2 LINE L2 -1086 2228 1981 1204 249 98 59 chr12 97068878 97069400 -46717055 + MLT1F LTR MaLR 1 542 0 545 344 188 12 chr12 97069492 97069948 -46716507 - L2 LINE L2 -4 3309 2764 481 359 48 15 chr12 97070162 97070432 -46716023 - L2 LINE L2 -337 2977 2699 259 328 50 17 chr12 97071000 97071119 -46715336 - MIR SINE MIR -117 145 23 2175 99 10 0 chr12 97071599 97071891 -46714564 + AluSg SINE Alu 1 295 -15 1828 164 0 7 chr12 97072107 97072387 -46714068 + AluJb SINE Alu 24 301 -11 27 0 0 0 chr12 97072387 97072414 -46714041 + AT_rich Low_complexity Low_complexity 1 27 0 266 266 111 63 chr12 97072475 97072682 -46713773 + MLT1L LTR MaLR 27 243 -372 198 143 0 0 chr12 97075008 97075043 -46711412 + (CA)n Simple_repeat Simple_repeat 2 36 0 1791 187 0 0 chr12 97075120 97075435 -46711020 - AluJb SINE Alu 0 315 1 225 94 0 0 chr12 97075836 97075868 -46710587 + (TG)n Simple_repeat Simple_repeat 2 33 0 201 109 0 65 chr12 97076317 97076363 -46710092 + (TGGGGG)n Simple_repeat Simple_repeat 6 48 0 669 374 45 15 chr12 97076497 97076829 -46709626 - L2 LINE L2 0 3272 2931 269 231 39 48 chr12 97077572 97077676 -46708779 - MER113 DNA MER1_type? -412 109 7 1956 223 48 29 chr12 97078128 97078685 -46707770 + MER74B LTR ERVL 55 622 0 2007 128 3 20 chr12 97078692 97078990 -46707465 + AluSg SINE Alu 1 293 -17 373 298 53 18 chr12 97079354 97079525 -46706930 - MLT1J2 LTR MaLR -7 443 267 247 230 40 14 chr12 97079626 97079700 -46706755 - MLT1J LTR MaLR -334 177 102 582 300 153 29 chr12 97080247 97080852 -46705603 + L2 LINE L2 2611 3291 -22 213 39 0 0 chr12 97080858 97080884 -46705571 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 637 282 94 26 chr12 97081575 97081884 -46704571 + MLT1I LTR MaLR 80 409 0 28 61 0 0 chr12 97082520 97082569 -46703886 + AT_rich Low_complexity Low_complexity 1 49 0 423 340 10 50 chr12 97083879 97084079 -46702376 - MIR3 SINE MIR -9 199 8 2158 99 14 0 chr12 97084943 97085225 -46701230 + AluSc SINE Alu 20 305 -4 617 170 20 39 chr12 97085233 97085386 -46701069 - L1MA3 LINE L1 0 6305 6156 2068 105 82 103 chr12 97085703 97086140 -46700315 - MSTA LTR MaLR 0 428 1 360 0 0 0 chr12 97086245 97086285 -46700170 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr12 97086284 97086322 -46700133 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 558 275 129 38 chr12 97086728 97086968 -46699487 + MIR SINE MIR 1 262 0 180 77 0 0 chr12 97087603 97087629 -46698826 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1027 257 95 27 chr12 97088606 97089007 -46697448 + MLT1J2 LTR MaLR 9 436 -14 710 146 310 6 chr12 97089240 97089411 -46697044 + MER58A DNA MER1_type 2 224 0 1062 63 23 17 chr12 97089924 97090099 -46696356 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1487 169 45 63 chr12 97090146 97090525 -46695930 - MLT1A2 LTR MaLR 0 374 3 931 328 106 13 chr12 97090569 97091024 -46695431 - L2 LINE L2 0 3313 2817 311 276 26 17 chr12 97091200 97091316 -46695139 + L1ME LINE L1 5550 5666 -455 1858 188 0 17 chr12 97091508 97091865 -46694590 + MLT1A1 LTR MaLR 15 365 0 2459 131 3 8 chr12 97092211 97092577 -46693878 + THE1B LTR MaLR 1 364 0 386 271 20 44 chr12 97093022 97093378 -46693077 + L1MCc LINE L1 1263 1780 -4961 1324 319 16 2 chr12 97093383 97093834 -46692621 + LTR16B LTR ERVL 6 462 -2 1593 181 0 59 chr12 97093942 97094262 -46692193 + AluJo SINE Alu 1 301 -11 764 321 73 29 chr12 97094334 97095141 -46691314 + L1MCc LINE L1 1978 2820 -4302 1386 216 3 21 chr12 97095252 97095539 -46690916 - AluJo SINE Alu -30 282 1 257 234 131 51 chr12 97095625 97095762 -46690693 + MER112 DNA MER1_type 106 253 -7 376 279 75 102 chr12 97095762 97096016 -46690439 - MIR SINE MIR -14 248 2 355 301 42 73 chr12 97096567 97096826 -46689629 - L3b LINE CR1 -231 1352 1102 1838 120 105 12 chr12 97096943 97097267 -46689188 + MER46B DNA MER2_type 1 229 -7 1396 212 98 45 chr12 97098269 97098688 -46687767 + MLT2B1 LTR ERVL 15 455 -65 345 319 0 0 chr12 97098692 97098783 -46687672 + L1MC4 LINE L1 6613 6703 -1339 209 139 23 0 chr12 97098886 97098929 -46687526 + CT-rich Low_complexity Low_complexity 2 45 0 271 279 0 0 chr12 97098932 97099000 -46687455 + (TATG)n Simple_repeat Simple_repeat 3 70 0 239 264 42 0 chr12 97099000 97099072 -46687383 - L1MC4 LINE L1 -131 7911 7837 613 355 144 25 chr12 97099467 97100285 -46686170 - L2 LINE L2 -501 2813 1883 1025 170 14 58 chr12 97100285 97100508 -46685947 - MER20 DNA MER1_type -4 215 3 613 355 144 25 chr12 97100508 97100562 -46685893 - L2 LINE L2 -1431 1883 1837 196 345 164 74 chr12 97101591 97102251 -46684204 - L2 LINE L2 -1534 1780 1062 1121 154 0 12 chr12 97102267 97102436 -46684019 - AluJb SINE Alu -1 311 145 22 56 0 0 chr12 97102593 97102629 -46683826 + AT_rich Low_complexity Low_complexity 1 36 0 412 254 28 30 chr12 97102784 97103023 -46683432 + L1MC4a LINE L1 5266 5509 -612 427 274 70 57 chr12 97103185 97103313 -46683142 + L1MC4a LINE L1 5674 5808 -2000 3710 135 32 66 chr12 97103313 97104024 -46682431 - LTR8 LTR ERV1 -4 687 1 427 274 70 57 chr12 97104024 97104125 -46682330 + L1MC4a LINE L1 5808 5906 -1902 2152 162 3 16 chr12 97105185 97105555 -46680900 - MLT1A1 LTR MaLR 0 365 1 180 211 0 0 chr12 97105800 97105838 -46680617 - L2 LINE L2 -7 3306 3269 22 35 0 0 chr12 97107237 97107266 -46679189 + AT_rich Low_complexity Low_complexity 1 29 0 257 371 66 0 chr12 97107618 97107769 -46678686 + MIR SINE MIR 57 217 -45 190 292 26 19 chr12 97107800 97107868 -46678587 - MIR SINE MIR -132 76 8 1555 95 0 86 chr12 97108061 97108304 -46678151 + AluSg/x SINE Alu 83 304 -6 2186 125 0 0 chr12 97108611 97108908 -46677547 + AluSg1 SINE Alu 1 297 -12 232 293 19 38 chr12 97109203 97109309 -46677146 + L2 LINE L2 3210 3313 0 621 333 65 12 chr12 97109844 97110090 -46676365 + MIR SINE MIR 4 262 0 219 322 0 0 chr12 97111308 97111367 -46675088 + MIR SINE MIR 82 140 -68 181 265 0 0 chr12 97111903 97111937 -46674518 - L2 LINE L2 -18 3295 3262 * 757 225 63 11 chr12 97111907 97112098 -46674357 - MIR SINE MIR -16 246 46 2023 102 63 7 chr12 97112691 97112975 -46673480 - AluY SINE Alu -11 300 1 2168 68 0 68 chr12 97112993 97113303 -46673152 - AluY SINE Alu -22 289 1 324 0 0 0 chr12 97113419 97113455 -46673000 + (TG)n Simple_repeat Simple_repeat 1 36 0 347 298 13 60 chr12 97114466 97114587 -46671868 + MIR3 SINE MIR 38 152 -56 871 189 102 15 chr12 97114587 97114793 -46671662 + MER58A DNA MER1_type 1 224 0 347 298 13 60 chr12 97114793 97114822 -46671633 + MIR3 SINE MIR 152 181 -27 207 163 41 20 chr12 97114971 97115020 -46671435 + MER5B DNA MER1_type 1 50 -128 331 100 33 33 chr12 97115026 97115086 -46671369 - U13 snRNA snRNA -26 78 19 284 315 0 22 chr12 97115105 97115197 -46671258 - MER5B DNA MER1_type -52 126 37 2125 123 23 10 chr12 97115198 97115500 -46670955 + AluSx SINE Alu 1 306 -6 1145 153 0 0 chr12 97115500 97115663 -46670792 + AluSg/x SINE Alu 134 296 -16 2427 131 7 12 chr12 97115718 97116138 -46670317 + L1MA8 LINE L1 5718 6135 -156 267 295 33 66 chr12 97116313 97116435 -46670020 + MER5B DNA MER1_type 46 163 -15 217 392 0 0 chr12 97116542 97116621 -46669834 + L2 LINE L2 3189 3267 -5 227 300 0 0 chr12 97118872 97118932 -46667523 - L2 LINE L2 -8 3264 3205 227 293 27 0 chr12 97119054 97119129 -46667326 + MER5A DNA MER1_type 26 102 -87 2183 57 0 0 chr12 97119340 97119603 -46666852 - AluY SINE Alu -7 304 42 2052 133 3 31 chr12 97120029 97120351 -46666104 + AluSq SINE Alu 1 313 0 764 232 36 52 chr12 97120628 97120878 -46665577 - MIR SINE MIR -2 260 15 268 156 0 0 chr12 97121624 97121669 -46664786 - L2 LINE L2 0 3313 3269 189 316 86 32 chr12 97122262 97122449 -46664006 + L2 LINE L2 1285 1481 -1833 355 292 111 37 chr12 97123192 97123408 -46663047 - MIR SINE MIR -9 253 22 378 0 0 0 chr12 97123442 97123484 -46662971 + (TG)n Simple_repeat Simple_repeat 2 43 0 505 260 144 65 chr12 97125267 97125618 -46660837 + L2 LINE L2 2649 3063 -250 2211 123 0 7 chr12 97125618 97125920 -46660535 + AluSx SINE Alu 1 300 -12 505 260 144 65 chr12 97125920 97126128 -46660327 + L2 LINE L2 3063 3253 -60 557 302 58 41 chr12 97126563 97126854 -46659601 + L2 LINE L2 3017 3312 -1 714 338 98 38 chr12 97127162 97127792 -46658663 - L2 LINE L2 -913 2401 1734 246 214 14 14 chr12 97127841 97127911 -46658544 + L1MA10 LINE L1 6263 6332 -2 842 262 11 19 chr12 97129311 97129574 -46656881 - MIR SINE MIR 0 262 2 299 229 0 14 chr12 97129574 97129644 -46656811 + L2 LINE L2 2572 2640 -674 28 0 0 0 chr12 97129665 97129693 -46656762 + AT_rich Low_complexity Low_complexity 1 28 0 2695 102 13 0 chr12 97129858 97130249 -46656206 - L1PA13 LINE L1 -4 6159 5764 465 304 47 0 chr12 97130773 97130921 -46655534 + L2 LINE L2 3159 3313 0 656 249 65 35 chr12 97131059 97131152 -46655303 + MIR SINE MIR 20 109 -153 2552 151 9 19 chr12 97131152 97131582 -46654873 + MSTB LTR MaLR 1 426 0 656 249 65 35 chr12 97131582 97131717 -46654738 + MIR SINE MIR 109 255 -7 276 207 45 0 chr12 97133051 97133162 -46653293 + (TA)n Simple_repeat Simple_repeat 2 117 0 29 0 0 0 chr12 97133817 97133846 -46652609 + AT_rich Low_complexity Low_complexity 1 29 0 5664 94 14 23 chr12 97135259 97136130 -46650325 + L1PA15 LINE L1 5280 6142 -23 325 331 23 30 chr12 97136130 97136263 -46650192 + MIR SINE MIR 52 183 -79 315 287 56 19 chr12 97136491 97136599 -46649856 + HAL1 LINE L1 1 112 -2395 308 287 89 94 chr12 97136938 97137325 -46649130 + HAL1 LINE L1 814 1201 -1306 6665 64 17 0 chr12 97137325 97138338 -46648117 + L1PA7 LINE L1 5106 6138 -16 308 287 89 94 chr12 97138338 97138890 -46647565 + HAL1 LINE L1 1201 1749 -758 334 277 95 7 chr12 97139072 97139209 -46647246 + HAL1 LINE L1 2027 2175 -332 320 245 57 9 chr12 97139417 97139523 -46646932 + HAL1 LINE L1 1441 1551 -956 467 239 99 42 chr12 97139672 97139885 -46646570 + HAL1 LINE L1 2246 2470 -37 481 283 81 88 chr12 97141609 97141812 -46644643 - Charlie8 DNA MER1_type -1997 420 218 2159 124 0 10 chr12 97141812 97142119 -46644336 + AluSc SINE Alu 2 305 -4 481 283 81 88 chr12 97142119 97142223 -46644232 - Charlie8 DNA MER1_type -2199 218 115 526 312 65 81 chr12 97142326 97142695 -46643760 + L2 LINE L2 2907 3269 -3 299 285 262 0 chr12 97142794 97142966 -46643489 + MIR SINE MIR 46 262 0 287 270 233 21 chr12 97143414 97143603 -46642852 + MIR SINE MIR 22 250 -12 345 217 270 35 chr12 97144336 97144562 -46641893 - LTR67 LTR ERVL -28 529 251 323 252 50 13 chr12 97145238 97145341 -46641114 - MER20B DNA MER1_type 0 219 103 226 274 189 11 chr12 97145575 97145670 -46640785 + MIR SINE MIR 37 148 -60 468 200 67 9 chr12 97145670 97145775 -46640680 - LTR16A1 LTR ERVL 0 457 347 2216 98 0 3 chr12 97146164 97146449 -46640006 + AluSg1 SINE Alu 1 284 -25 381 198 0 0 chr12 97146452 97146533 -46639922 + (TATG)n Simple_repeat Simple_repeat 4 84 0 255 106 0 0 chr12 97146534 97146581 -46639874 + LTR66 LTR ERVL 393 439 -171 210 328 60 0 chr12 97146780 97146847 -46639608 + MIR SINE MIR 36 106 -102 3187 60 3 0 chr12 97147103 97147486 -46638969 - L1PA5 LINE L1 -1 6153 5770 7987 38 0 0 chr12 97147730 97148829 -46637626 - L1PA4 LINE L1 0 6155 5057 2323 77 0 14 chr12 97148863 97149160 -46637295 + AluY SINE Alu 1 293 -18 431 128 117 0 chr12 97149455 97149549 -46636906 + L1 LINE L1 5175 5279 -867 2424 89 0 0 chr12 97149928 97150230 -46636225 - AluY SINE Alu -9 302 1 228 111 0 0 chr12 97150298 97150334 -46636121 + (CA)n Simple_repeat Simple_repeat 1 36 0 323 339 16 31 chr12 97150348 97150475 -46635980 - L2 LINE L2 -7 3265 3141 476 270 53 7 chr12 97151667 97151819 -46634636 + MIR SINE MIR 63 221 -41 194 368 53 21 chr12 97152220 97152315 -46634140 + L2 LINE L2 3164 3261 -11 22 0 0 0 chr12 97153668 97153690 -46632765 + AT_rich Low_complexity Low_complexity 1 22 0 864 234 121 19 chr12 97154067 97154332 -46632123 + MLT1H LTR MaLR 245 536 -13 445 273 27 0 chr12 97154873 97154983 -46631472 + LTR16C LTR ERVL 373 485 -6 287 336 101 25 chr12 97155138 97155504 -46630951 + L2 LINE L2 2584 2977 -337 282 344 47 31 chr12 97155901 97156029 -46630426 + L2 LINE L2 3134 3263 -9 1627 174 7 4 chr12 97156389 97156665 -46629790 + AluJo SINE Alu 1 277 -35 620 255 13 13 chr12 97157073 97157184 -46629271 + MER58 DNA MER1_type 1 114 -227 2139 129 0 0 chr12 97157184 97157478 -46628977 + AluSx SINE Alu 1 294 -18 620 255 13 13 chr12 97157478 97157515 -46628940 + MER58 DNA MER1_type 113 149 -192 860 321 95 11 chr12 97157881 97158249 -46628206 + L3 LINE CR1 1174 1572 -5 2232 116 0 0 chr12 97158318 97158619 -46627836 + AluSc SINE Alu 1 301 -8 2273 88 7 0 chr12 97158619 97158903 -46627552 + AluSg SINE Alu 1 286 -24 189 316 9 79 chr12 97160528 97160642 -46625813 + MIR SINE MIR 2 107 -155 1280 250 159 42 chr12 97161007 97161668 -46624787 + Charlie7 DNA MER1_type 1 738 -1874 2280 129 134 8 chr12 97161681 97162061 -46624394 - MSTA LTR MaLR 0 428 1 2265 107 3 0 chr12 97162196 97162496 -46623959 + AluSx SINE Alu 1 301 -11 1734 211 57 14 chr12 97162632 97162982 -46623473 - MLT1A1 LTR MaLR 0 365 1 373 277 194 0 chr12 97163311 97163466 -46622989 - LTR33 LTR ERVL -331 190 6 553 309 140 40 chr12 97163518 97163996 -46622459 - L2 LINE L2 0 3313 2776 515 360 31 23 chr12 97164079 97164340 -46622115 + L2 LINE L2 2920 3182 -90 909 258 29 17 chr12 97164702 97164942 -46621513 - MIR SINE MIR 0 262 20 2257 92 3 10 chr12 97165002 97165306 -46621149 - AluSc SINE Alu -7 302 1 2190 125 9 12 chr12 97165308 97165636 -46620819 - L1PA15 LINE L1 0 6165 5839 204 316 76 13 chr12 97166026 97166105 -46620350 + MIR3 SINE MIR 104 187 -21 193 319 246 0 chr12 97166719 97166788 -46619667 + MIR3 SINE MIR 75 160 -48 358 290 71 30 chr12 97168058 97168227 -46618228 - MER117 DNA MER1_type -21 176 1 24 32 0 0 chr12 97168424 97168455 -46618000 + AT_rich Low_complexity Low_complexity 1 31 0 372 290 118 43 chr12 97168637 97168892 -46617563 + L2 LINE L2 2402 2675 -639 191 258 33 75 chr12 97169007 97169127 -46617328 - MER5C DNA MER1_type -209 115 1 * 223 289 33 133 chr12 97169127 97169332 -46617123 + L2 LINE L2 2793 2976 -338 2068 153 49 25 chr12 97169370 97169736 -46616719 - THE1C LTR MaLR 0 375 1 10047 132 31 34 chr12 97169736 97171318 -46615137 - THE1C-int LTR MaLR 0 1580 3 1795 136 46 85 chr12 97171320 97171630 -46614825 - THE1C LTR MaLR 0 375 81 4271 119 49 12 chr12 97171630 97172220 -46614235 + LTR9 LTR ERV1 1 612 0 1795 136 46 85 chr12 97172220 97172298 -46614157 - THE1C LTR MaLR -294 81 2 232 225 0 0 chr12 97172422 97172462 -46613993 + L2 LINE L2 3136 3175 -97 3630 125 15 28 chr12 97175328 97175864 -46610591 + MER1A DNA MER1_type 1 529 0 23 33 0 0 chr12 97176503 97176533 -46609922 + AT_rich Low_complexity Low_complexity 1 30 0 588 346 41 8 chr12 97177012 97177255 -46609200 - MIR SINE MIR 0 262 12 180 0 0 0 chr12 97178692 97178712 -46607743 + (A)n Simple_repeat Simple_repeat 1 20 0 240 256 122 0 chr12 97179043 97179125 -46607330 + MIR SINE MIR 65 156 -106 2132 122 0 55 chr12 97179204 97179531 -46606924 - AluSx SINE Alu -3 309 1 182 354 0 0 chr12 97179615 97179663 -46606792 - L2 LINE L2 -88 3184 3137 554 285 146 0 chr12 97179733 97179891 -46606564 - MER5A DNA MER1_type 0 189 9 388 262 55 114 chr12 97180521 97180758 -46605697 + MER102b DNA MER1_type 109 331 -10 427 304 175 0 chr12 97182152 97182346 -46604109 + MIR SINE MIR 14 241 -21 481 229 110 69 chr12 97183230 97183448 -46603007 + L2 LINE L2 3082 3308 -5 24 67 0 0 chr12 97183645 97183690 -46602765 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr12 97184249 97184285 -46602170 + AT_rich Low_complexity Low_complexity 1 36 0 259 219 27 0 chr12 97185633 97185706 -46600749 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 71 0 0 chr12 97186120 97186162 -46600293 + AT_rich Low_complexity Low_complexity 1 42 0 191 352 0 0 chr12 97186966 97187020 -46599435 - MIR SINE MIR -6 256 203 4090 164 23 19 chr12 97187339 97187380 -46599075 + ERVL LTR ERVL 3021 3060 -2704 2228 115 10 0 chr12 97187380 97187685 -46598770 + AluY SINE Alu 1 308 -3 4090 164 23 19 chr12 97187685 97188331 -46598124 + ERVL LTR ERVL 3060 3711 -2053 7176 158 31 14 chr12 97188424 97189603 -46596852 + ERVL LTR ERVL 3714 4913 -851 1602 213 77 23 chr12 97189618 97190007 -46596448 - MER21B LTR ERV1 -51 812 403 302 57 0 0 chr12 97190008 97190034 -46596421 - LTR3b LTR ERVK 0 500 475 1896 155 76 55 chr12 97190034 97190454 -46596001 - LTR3 LTR ERVK 0 429 1 419 147 0 0 chr12 97190466 97190534 -46595921 - HERVK14 LTR ERVK -58 5887 5820 344 161 0 0 chr12 97190551 97190613 -46595842 - HERVK14 LTR ERVK -425 5520 5459 * 2360 182 7 7 chr12 97190608 97191059 -46595396 - HERVK3 LTR ERVK -4934 2309 1859 553 88 33 22 chr12 97191051 97191142 -46595313 - HERVK3 LTR ERVK -5826 1417 1326 * 459 231 0 29 chr12 97191136 97191240 -46595215 - HERVK3 LTR ERVK -6563 680 580 * 596 191 80 98 chr12 97191299 97191524 -46594931 - HERVK3 LTR ERVK -6971 272 52 3293 80 0 9 chr12 97191813 97192263 -46594192 - LTR3b LTR ERVK -54 446 1 707 272 86 37 chr12 97192295 97192563 -46593892 - MER21B LTR ERV1 -496 367 87 24 53 0 0 chr12 97192628 97192666 -46593789 + AT_rich Low_complexity Low_complexity 1 38 0 210 371 76 23 chr12 97192691 97192823 -46593632 - MIR3 SINE MIR -64 144 6 796 169 75 41 chr12 97192945 97193283 -46593172 + MSTD LTR MaLR 3 396 0 527 221 18 68 chr12 97193283 97193446 -46593009 + L2 LINE L2 3159 3313 0 216 143 0 0 chr12 97194011 97194053 -46592402 + (TA)n Simple_repeat Simple_repeat 1 42 0 1912 172 26 28 chr12 97194854 97195243 -46591212 + MLT1B LTR MaLR 1 388 -2 1166 292 57 29 chr12 97195338 97195955 -46590500 - Tigger8 DNA MER2_type -3 663 30 230 292 208 21 chr12 97196123 97196267 -46590188 - L2 LINE L2 -11 3302 3132 1823 160 30 39 chr12 97196705 97197067 -46589388 + MLT1A1 LTR MaLR 1 359 -6 407 312 25 13 chr12 97197267 97197424 -46589031 - MIR3 SINE MIR -1 207 49 530 259 171 23 chr12 97197489 97197705 -46588750 + MIR SINE MIR 1 248 -14 28 29 0 0 chr12 97198960 97198995 -46587460 + AT_rich Low_complexity Low_complexity 1 35 0 1849 149 33 24 chr12 97199139 97199474 -46586981 - MER44D DNA MER2_type -1 608 1 317 293 128 6 chr12 97199557 97199721 -46586734 - MIR SINE MIR -39 223 40 219 69 0 0 chr12 97200000 97200029 -46586426 + (A)n Simple_repeat Simple_repeat 1 29 0 334 383 49 67 chr12 97200481 97200912 -46585543 - L2 LINE L2 -2 3270 2848 365 274 27 86 chr12 97201109 97201295 -46585160 - MIR SINE MIR -51 211 37 770 268 109 0 chr12 97202554 97202774 -46583681 + MIR SINE MIR 19 262 0 216 167 0 0 chr12 97203406 97203442 -46583013 + MER91B DNA MER1_type 33 68 -122 452 306 60 49 chr12 97203836 97204101 -46582354 + L2 LINE L2 3045 3312 -1 301 68 0 0 chr12 97204209 97204253 -46582202 + L1MC2 LINE L1 5660 5703 -2082 2056 158 39 21 chr12 97204257 97204638 -46581817 - MER61D LTR ERV1 0 501 114 2588 183 30 34 chr12 97204685 97204893 -46581562 + L1MC2 LINE L1 5710 5917 -427 1865 228 28 22 chr12 97204893 97205357 -46581098 - MLT1C LTR MaLR 0 467 1 2588 183 30 34 chr12 97205357 97205750 -46580705 + L1MC2 LINE L1 5917 6311 -33 2325 104 0 0 chr12 97205750 97206047 -46580408 + AluSc SINE Alu 1 297 -12 2588 183 30 34 chr12 97206047 97206071 -46580384 + L1MC2 LINE L1 6311 6334 -10 447 243 93 0 chr12 97206132 97206239 -46580216 + Tigger7 DNA MER2_type 1 117 -433 * 1822 166 32 3 chr12 97206236 97206574 -46579881 + Tigger7 DNA MER2_type 2238 2585 -2 25 0 0 0 chr12 97206836 97206861 -46579594 + AT_rich Low_complexity Low_complexity 1 25 0 1867 203 54 11 chr12 97207465 97207908 -46578547 + MLT1C LTR MaLR 6 467 0 281 337 47 70 chr12 97208071 97208192 -46578263 + L2 LINE L2 2582 2704 -610 2086 141 0 7 chr12 97208192 97208496 -46577959 + AluJb SINE Alu 1 302 -10 281 337 47 70 chr12 97208496 97208585 -46577870 + L2 LINE L2 2704 2787 -527 1295 232 16 63 chr12 97208585 97208968 -46577487 - MLT1A1 LTR MaLR 0 365 1 281 337 47 70 chr12 97208968 97209014 -46577441 + L2 LINE L2 2787 2833 -481 299 192 23 115 chr12 97209044 97209174 -46577281 + HAL1 LINE L1 1981 2098 -409 1627 189 92 54 chr12 97209228 97209693 -46576762 + MER68 LTR ERV1 1 483 -79 1828 180 7 66 chr12 97209702 97210113 -46576342 + MSTD LTR MaLR 10 396 0 414 222 37 0 chr12 97210113 97210194 -46576261 + MER68 LTR ERV1 479 562 0 319 241 90 42 chr12 97210276 97210442 -46576013 + HAL1 LINE L1 2282 2455 -52 36 62 0 0 chr12 97210455 97210519 -46575936 + AT_rich Low_complexity Low_complexity 1 64 0 599 217 192 0 chr12 97211172 97211375 -46575080 + L1MC4 LINE L1 6462 6703 -1339 272 245 21 21 chr12 97211331 97211425 -46575030 - L1MC4 LINE L1 -1335 6707 6614 * 552 193 29 21 chr12 97211460 97211600 -46574855 + L1MC4 LINE L1 6888 7028 -1014 2189 200 181 23 chr12 97211601 97212426 -46574029 + L1MC4 LINE L1 7099 8042 0 216 302 135 0 chr12 97212479 97212575 -46573880 - MIR SINE MIR -152 110 2 1304 163 4 49 chr12 97212583 97212897 -46573558 + L1MB8 LINE L1 5887 6175 -9 2522 161 45 0 chr12 97213016 97213457 -46572998 + LOR1b LTR ERV1 1 461 0 527 311 53 41 chr12 97214356 97214600 -46571855 + MIR SINE MIR 16 262 0 223 291 127 9 chr12 97214680 97214790 -46571665 + MIR SINE MIR 105 227 -35 1405 237 79 14 chr12 97214821 97215603 -46570852 + L1M1 LINE L1 2733 3566 -3999 2976 220 28 5 chr12 97215737 97216486 -46569969 + L1M1 LINE L1 3798 4563 -3002 933 251 5 5 chr12 97216486 97216697 -46569758 + AluJo SINE Alu 93 303 -9 1947 204 38 4 chr12 97216700 97217204 -46569251 + L1M1 LINE L1 4559 5079 -2486 222 186 17 34 chr12 97217204 97217263 -46569192 + (TATG)n Simple_repeat Simple_repeat 3 60 0 244 0 0 0 chr12 97217265 97217296 -46569159 - L1MA5 LINE L1 -110 6190 6160 275 212 0 30 chr12 97217308 97217374 -46569081 + (CA)n Simple_repeat Simple_repeat 2 65 0 2708 157 20 10 chr12 97217374 97217877 -46568578 + L1MA6 LINE L1 5789 6296 -4 814 211 46 11 chr12 97218394 97218569 -46567886 - MER5A DNA MER1_type -8 181 1 563 275 89 24 chr12 97219086 97219310 -46567145 - MIR SINE MIR -8 254 21 1169 107 31 2 chr12 97220455 97220670 -46565785 + L1MA4A LINE L1 6012 6234 -67 2472 171 12 0 chr12 97220671 97221098 -46565357 - MER57B LTR ERV1 0 434 3 1227 54 162 5 chr12 97221102 97221287 -46565168 - MER57B-int LTR ERV1 -2 7535 7322 286 118 0 0 chr12 97221287 97221338 -46565117 + L1MA4A LINE L1 6231 6281 -22 2238 98 7 0 chr12 97221341 97221628 -46564827 - AluSq SINE Alu -24 289 1 26 0 0 0 chr12 97221652 97221678 -46564777 + AT_rich Low_complexity Low_complexity 1 26 0 532 250 48 0 chr12 97221697 97221821 -46564634 + MIR SINE MIR 108 237 -25 426 335 54 20 chr12 97222010 97222213 -46564242 + MIR SINE MIR 53 262 0 2104 106 0 7 chr12 97223121 97223423 -46563032 + AluSg SINE Alu 1 300 0 2499 70 3 0 chr12 97223528 97223830 -46562625 + AluY SINE Alu 1 303 -8 23 78 0 0 chr12 97223902 97223953 -46562502 + AT_rich Low_complexity Low_complexity 1 51 0 214 216 45 11 chr12 97223965 97224053 -46562402 + (TA)n Simple_repeat Simple_repeat 1 91 0 477 314 26 6 chr12 97224123 97224279 -46562176 - MIR SINE MIR -65 197 39 2225 102 52 19 chr12 97224378 97224740 -46561715 - THE1C LTR MaLR -1 374 1 391 261 144 0 chr12 97226527 97226638 -46559817 - L2 LINE L2 -1 3312 3186 194 328 101 34 chr12 97226681 97226800 -46559655 + MIR SINE MIR 20 146 -62 238 211 143 75 chr12 97227582 97227698 -46558757 - HAL1 LINE L1 -109 2398 2267 2151 109 7 0 chr12 97227698 97227991 -46558464 - AluSx SINE Alu -17 295 1 238 211 143 75 chr12 97227991 97228035 -46558420 - HAL1 LINE L1 -240 2267 2227 571 252 170 0 chr12 97228284 97228431 -46558024 - MER5A DNA MER1_type -6 183 12 868 224 9 42 chr12 97229048 97229262 -46557193 + MER63A DNA MER1_type 1 207 -3 2073 148 0 3 chr12 97229638 97229936 -46556519 - AluJb SINE Alu -15 297 1 805 251 136 14 chr12 97230222 97230501 -46555954 + MLT1H LTR MaLR 12 324 -225 232 241 86 78 chr12 97230561 97230624 -46555831 + MLT1H LTR MaLR 433 499 -50 1323 103 89 9 chr12 97230624 97230837 -46555618 + MER30 DNA MER1_type 1 230 0 232 241 86 78 chr12 97230837 97230889 -46555566 + MLT1H LTR MaLR 499 549 0 384 229 104 35 chr12 97230892 97231123 -46555332 + L1MC5 LINE L1 7496 7742 -219 390 202 28 113 chr12 97231166 97231379 -46555076 + L1MC5 LINE L1 7719 7913 -48 333 162 0 29 chr12 97231751 97231819 -46554636 - MLT1K LTR MaLR -9 579 514 270 245 0 43 chr12 97231827 97231921 -46554534 - MLT1J2 LTR MaLR -3 447 358 445 186 80 18 chr12 97232056 97232169 -46554286 - MLT1J2 LTR MaLR -328 122 3 2236 141 0 0 chr12 97232560 97232872 -46553583 - AluSx SINE Alu 0 312 1 189 314 79 36 chr12 97233070 97233210 -46553245 - L2 LINE L2 -300 2972 2827 1845 169 0 26 chr12 97233768 97234076 -46552379 + AluJb SINE Alu 1 300 -12 504 266 83 66 chr12 97235479 97235736 -46550719 + MIR SINE MIR 13 262 0 21 36 0 0 chr12 97236180 97236208 -46550247 + AT_rich Low_complexity Low_complexity 1 28 0 1607 165 4 29 chr12 97237190 97237463 -46548992 + AluJo SINE Alu 9 274 -38 484 55 14 14 chr12 97237512 97237585 -46548870 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr12 97238794 97238815 -46547640 + AT_rich Low_complexity Low_complexity 1 21 0 210 292 0 15 chr12 97239330 97239395 -46547060 + GA-rich Low_complexity Low_complexity 3 66 0 190 368 58 26 chr12 97240087 97240242 -46546213 + L2 LINE L2 2193 2352 -962 518 248 66 0 chr12 97240589 97240710 -46545745 + MER94 DNA DNA 1 129 -5 364 296 189 0 chr12 97241084 97241253 -46545202 + MIR SINE MIR 27 227 -35 4166 61 10 0 chr12 97241279 97241790 -46544665 + L1PA7 LINE L1 5619 6134 -20 2466 65 0 19 chr12 97241863 97242173 -46544282 - AluY SINE Alu -7 304 1 2165 106 3 0 chr12 97242625 97242979 -46543476 + AluSx SINE Alu 1 355 0 249 366 23 23 chr12 97243106 97243237 -46543218 - L2 LINE L2 -517 2797 2667 243 297 34 40 chr12 97243255 97243403 -46543052 + MER103 DNA DNA 18 164 -2 259 241 81 23 chr12 97243668 97243755 -46542700 - MIR SINE MIR -7 255 164 320 309 6 0 chr12 97244406 97244503 -46541952 - MIR SINE MIR -36 172 72 1269 254 73 47 chr12 97245055 97245612 -46540843 + MLT1F1 LTR MaLR 1 567 0 22 35 0 0 chr12 97246237 97246266 -46540189 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr12 97246567 97246613 -46539842 + (CA)n Simple_repeat Simple_repeat 1 46 0 341 257 62 18 chr12 97247577 97247690 -46538765 + MIR SINE MIR 48 165 -97 3357 44 0 0 chr12 97247932 97248315 -46538140 - L1PA4 LINE L1 -3 6152 5770 45234 36 2 1 chr12 97248315 97254457 -46531998 - L1PA3 LINE L1 -2 6153 9 15737 28 0 3 chr12 97254462 97256694 -46529761 - L1PA4 LINE L1 -368 5787 3563 191 283 19 0 chr12 97256946 97256999 -46529456 + L2 LINE L2 3214 3267 -5 193 407 56 6 chr12 97257006 97257168 -46529287 - MIR SINE MIR -73 189 20 180 179 0 0 chr12 97257228 97257267 -46529188 + (TTA)n Simple_repeat Simple_repeat 2 40 0 471 279 50 34 chr12 97258135 97258398 -46528057 - L1ME4a LINE L1 -208 5913 5678 704 278 48 5 chr12 97258940 97259127 -46527328 - MER63A DNA MER1_type 0 210 16 2006 133 14 7 chr12 97259209 97259502 -46526953 - AluSx SINE Alu -17 295 1 498 317 27 11 chr12 97260428 97260611 -46525844 + MIR3 SINE MIR 19 204 -4 447 317 200 5 chr12 97261426 97261631 -46524824 + MIR SINE MIR 5 249 -13 1977 145 32 0 chr12 97261888 97262199 -46524256 - MER50 LTR ERV1 -413 321 1 712 261 96 5 chr12 97262223 97262441 -46524014 + MLT1L LTR MaLR 368 605 -10 1264 124 62 24 chr12 97262503 97262713 -46523742 - THE1C LTR MaLR 0 375 158 334 263 0 0 chr12 97262927 97263003 -46523452 - MER5A DNA MER1_type -104 85 10 656 198 63 0 chr12 97263749 97263875 -46522580 + MIR SINE MIR 29 162 -100 1873 132 40 0 chr12 97263875 97264171 -46522284 - AluSx SINE Alu -4 308 1 190 282 36 36 chr12 97264172 97264282 -46522173 + MIR SINE MIR 143 252 -10 360 0 0 0 chr12 97264629 97264669 -46521786 + (TG)n Simple_repeat Simple_repeat 1 40 0 1047 138 7 0 chr12 97266567 97266719 -46519736 + AluSg/x SINE Alu 142 294 -18 760 175 0 8 chr12 97266732 97266852 -46519603 - FLAM_C SINE Alu -23 120 2 917 184 0 36 chr12 97266870 97267038 -46519417 + AluJb SINE Alu 129 290 -22 966 120 7 7 chr12 97267246 97267388 -46519067 + AluSg/x SINE Alu 131 272 -38 2323 77 0 14 chr12 97267771 97268068 -46518387 - AluY SINE Alu -18 293 1 7987 38 0 0 chr12 97268102 97269201 -46517254 + L1PA4 LINE L1 5057 6155 0 3187 60 3 0 chr12 97269445 97269828 -46516627 + L1PA5 LINE L1 5770 6153 -1 210 328 60 0 chr12 97270084 97270151 -46516304 - MIR SINE MIR -102 106 36 255 106 0 0 chr12 97270350 97270397 -46516058 - LTR66 LTR ERVL -171 439 393 381 198 0 0 chr12 97270398 97270479 -46515976 + (CATA)n Simple_repeat Simple_repeat 4 84 0 2216 98 0 3 chr12 97270482 97270767 -46515688 - AluSg1 SINE Alu -25 284 1 468 200 67 9 chr12 97271156 97271261 -46515194 + LTR16A1 LTR ERVL 347 457 0 226 274 189 11 chr12 97271261 97271356 -46515099 - MIR SINE MIR -60 148 37 323 252 50 13 chr12 97271590 97271693 -46514762 + MER20B DNA MER1_type 103 219 0 345 217 270 35 chr12 97272369 97272595 -46513860 + LTR67 LTR ERVL 251 529 -28 287 270 233 21 chr12 97273328 97273517 -46512938 - MIR SINE MIR -12 250 22 299 285 262 0 chr12 97273965 97274137 -46512318 - MIR SINE MIR 0 262 46 526 312 65 81 chr12 97274236 97274605 -46511850 - L2 LINE L2 -3 3269 2907 481 283 81 88 chr12 97274708 97274812 -46511643 + Charlie8 DNA MER1_type 115 218 -2199 2159 124 0 10 chr12 97274812 97275119 -46511336 - AluSc SINE Alu -4 305 2 481 283 81 88 chr12 97275119 97275322 -46511133 + Charlie8 DNA MER1_type 218 420 -1997 467 239 99 42 chr12 97277046 97277259 -46509196 - HAL1 LINE L1 -37 2470 2246 320 245 57 9 chr12 97277408 97277514 -46508941 - HAL1 LINE L1 -956 1551 1441 279 248 117 29 chr12 97277722 97277859 -46508596 - HAL1 LINE L1 -332 2175 2027 603 293 25 53 chr12 97278041 97278359 -46508096 - HAL1 LINE L1 -758 1749 1441 316 348 43 18 chr12 97278388 97278552 -46507903 - HAL1 LINE L1 -1140 1367 1200 7555 58 0 0 chr12 97278593 97279675 -46506780 - L1PA6 LINE L1 -16 6138 5057 2323 77 0 14 chr12 97279709 97280006 -46506449 + AluY SINE Alu 1 293 -18 431 128 117 0 chr12 97280301 97280395 -46506060 + L1 LINE L1 5175 5279 -867 2424 89 0 0 chr12 97280774 97281076 -46505379 - AluY SINE Alu -9 302 1 228 111 0 0 chr12 97281144 97281180 -46505275 + (CA)n Simple_repeat Simple_repeat 1 36 0 323 339 16 31 chr12 97281194 97281321 -46505134 - L2 LINE L2 -7 3265 3141 476 270 53 7 chr12 97282512 97282664 -46503791 + MIR SINE MIR 63 221 -41 194 368 53 21 chr12 97283065 97283160 -46503295 + L2 LINE L2 3164 3261 -11 22 0 0 0 chr12 97284513 97284535 -46501920 + AT_rich Low_complexity Low_complexity 1 22 0 864 234 121 19 chr12 97284912 97285177 -46501278 + MLT1H LTR MaLR 245 536 -13 445 273 27 0 chr12 97285718 97285828 -46500627 + LTR16C LTR ERVL 373 485 -6 4048 55 2 34 chr12 97286848 97287539 -46498916 + L1P2 LINE L1 4895 5545 -610 2644 113 8 4 chr12 97288071 97288447 -46498008 + THE1C LTR MaLR 1 426 0 292 283 196 0 chr12 97489154 97489246 -46297209 - AluJo/FLAM SINE Alu -192 110 1 1123 181 32 57 chr12 97489246 97489494 -46296961 - Tigger3(Golem) DNA MER2_type -2772 257 16 1965 143 0 3 chr12 97489494 97489780 -46296675 - AluSx SINE Alu -27 285 1 441 0 0 0 chr12 97489862 97489911 -46296544 + (TA)n Simple_repeat Simple_repeat 1 49 0 665 192 0 33 chr12 97489914 97490034 -46296421 - FLAM_C SINE Alu -26 117 2 1505 164 82 18 chr12 97490044 97490325 -46296130 - AluJb SINE Alu -13 299 1 1537 151 13 76 chr12 97490684 97491001 -46295454 - AluJo SINE Alu -4 308 12 2158 105 31 0 chr12 97491226 97491520 -46294935 - AluSx SINE Alu -9 303 1 970 118 0 29 chr12 97491710 97491846 -46294609 - FLAM_C SINE Alu -1 132 1 1628 165 50 40 chr12 97491846 97492149 -46294306 - AluJb SINE Alu -6 306 1 1521 169 46 25 chr12 97492681 97492846 -46293609 - AluJb SINE Alu -14 298 123 2283 98 0 7 chr12 97492846 97493152 -46293303 - AluY SINE Alu -7 304 1 1521 169 46 25 chr12 97493152 97493270 -46293185 - AluJb SINE Alu -189 123 9 860 163 0 15 chr12 97493737 97493872 -46292583 - FLAM_A SINE Alu 0 133 1 204 274 41 14 chr12 97494086 97494159 -46292296 - L2 LINE L2 -256 3016 2942 2208 121 0 6 chr12 97494404 97494718 -46291737 - AluSx SINE Alu 0 312 1 207 69 0 0 chr12 97495544 97495573 -46290882 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2262 119 0 0 chr12 97495761 97496073 -46290382 - AluSx SINE Alu 0 312 1 350 199 115 115 chr12 97496221 97496428 -46290027 - L1M4 LINE L1 -744 5471 5262 186 43 0 0 chr12 97496428 97496451 -46290004 + (TATG)n Simple_repeat Simple_repeat 2 24 0 350 199 115 115 chr12 97496451 97496469 -46289986 - L1M4 LINE L1 -952 5263 5246 5587 125 33 8 chr12 97496514 97497397 -46289058 - L1PA16 LINE L1 -1 6165 5261 210 37 0 0 chr12 97498092 97498119 -46288336 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 980 212 0 0 chr12 97498135 97498314 -46288141 - FRAM SINE Alu -5 171 1 2112 147 0 0 chr12 97498326 97498633 -46287822 + AluJb SINE Alu 1 307 -5 356 258 137 16 chr12 97498654 97498778 -46287677 - L2 LINE L2 0 3313 3175 753 273 94 1 chr12 97498787 97499098 -46287357 - L2 LINE L2 -250 3063 2717 3861 197 17 26 chr12 97499105 97499979 -46286476 - L1MEc LINE L1 -1938 4277 3412 608 165 0 0 chr12 97499982 97500073 -46286382 + AluSp/q SINE Alu 193 283 -30 378 181 31 11 chr12 97500100 97500242 -46286213 - L1MEc LINE L1 -2794 3421 2271 2076 146 0 0 chr12 97500546 97500848 -46285607 + AluSx SINE Alu 3 304 -8 972 156 6 67 chr12 97501385 97501565 -46284890 + AluJo SINE Alu 18 186 -126 1343 161 137 24 chr12 97501661 97501953 -46284502 - MER61A LTR ERV1 0 343 19 3218 268 59 7 chr12 97502061 97502998 -46283457 + L2 LINE L2 2071 3063 -250 356 258 137 16 chr12 97503007 97503131 -46283324 + L2 LINE L2 3175 3313 0 410 131 0 0 chr12 97503152 97503213 -46283242 - Alu SINE Alu -5 307 247 464 327 73 29 chr12 97504524 97504799 -46281656 - L1ME LINE L1 -452 5669 5383 976 186 18 0 chr12 97505105 97505272 -46281183 + FAM SINE Alu 1 170 -5 234 175 0 0 chr12 97505749 97505789 -46280666 + Tigger5 DNA MER2_type 43 82 -2241 * 1043 163 198 0 chr12 97505779 97505981 -46280474 + Tigger5 DNA MER2_type 2081 2322 -1 203 240 93 0 chr12 97506208 97506283 -46280172 - MIR SINE MIR -48 214 133 1844 156 3 13 chr12 97507673 97507974 -46278481 - AluJo SINE Alu -14 298 1 427 228 178 10 chr12 97508043 97508245 -46278210 - L1ME4a LINE L1 -197 5924 5689 203 120 0 60 chr12 97508257 97508307 -46278148 + (T)n Simple_repeat Simple_repeat 1 47 0 1873 132 17 17 chr12 97508447 97508734 -46277721 - AluSx SINE Alu -25 287 1 306 246 47 70 chr12 97509052 97509223 -46277232 + L2 LINE L2 3110 3276 -37 2094 123 0 41 chr12 97510202 97510518 -46275937 - AluSq SINE Alu -10 303 1 2197 118 7 3 chr12 97510551 97510855 -46275600 - AluSp SINE Alu -8 305 1 281 212 220 34 chr12 97511194 97511312 -46275143 - MIR3 SINE MIR -4 204 65 238 222 349 0 chr12 97511405 97511468 -46274987 + MER63 DNA MER1_type 1 711 -351 1058 219 139 76 chr12 97511805 97512120 -46274335 - MLT1H LTR MaLR -2 547 194 1674 127 3 103 chr12 97512120 97512248 -46274207 + AluJo SINE Alu 1 140 -172 2188 104 7 0 chr12 97512248 97512535 -46273920 - AluSp SINE Alu -24 289 1 1674 127 3 103 chr12 97512535 97512736 -46273719 + AluJo SINE Alu 140 297 -15 1058 219 139 76 chr12 97512736 97512867 -46273588 - MLT1H LTR MaLR -355 194 73 2315 114 0 0 chr12 97513196 97513494 -46272961 + AluSx SINE Alu 1 298 -14 1043 207 70 16 chr12 97513494 97513750 -46272705 - L1ME4a LINE L1 -578 5586 5317 1833 150 57 7 chr12 97513777 97514077 -46272378 + 7SLRNA srpRNA srpRNA 1 315 -5 5308 158 51 17 chr12 97514077 97515141 -46271314 - L1MC1 LINE L1 -12 6321 5221 2300 113 0 0 chr12 97516460 97516769 -46269686 + AluSq SINE Alu 1 309 -4 1660 181 30 13 chr12 97517474 97517777 -46268678 - AluJo SINE Alu -4 308 1 208 224 259 0 chr12 97518054 97518139 -46268316 + MER5C DNA MER1_type 206 312 -12 2275 97 0 0 chr12 97518151 97518439 -46268016 - AluSg SINE Alu -22 288 1 537 286 198 82 chr12 97518471 97518578 -46267877 - L3 LINE CR1 -103 1474 1381 1839 124 95 0 chr12 97518578 97518861 -46267594 - AluSx SINE Alu -2 310 1 537 286 198 82 chr12 97518861 97519239 -46267216 - L3 LINE CR1 -196 1381 933 213 328 65 54 chr12 97519466 97519652 -46266803 - L2 LINE L2 -620 2694 2507 1887 154 0 3 chr12 97519659 97519958 -46266497 - AluSx SINE Alu -12 300 3 2581 217 58 0 chr12 97520010 97520545 -46265910 + MER90 LTR ERV1 8 573 -2 530 254 125 43 chr12 97520546 97520778 -46265677 - L2 LINE L2 -846 2468 2218 1691 144 12 0 chr12 97520836 97521092 -46265363 - AluJb SINE Alu -18 294 36 464 272 48 5 chr12 97521215 97521421 -46265034 - AluSx SINE Alu -92 220 6 1595 190 14 0 chr12 97521426 97521715 -46264740 - AluJb SINE Alu -19 293 1 427 173 0 27 chr12 97521715 97521790 -46264665 - AluSc SINE Alu -20 289 217 404 288 123 0 chr12 97521797 97521943 -46264512 + MER69 DNA AcHobo 174 337 -889 955 210 32 32 chr12 97521959 97522178 -46264277 + Tigger5 DNA MER2_type 20 238 -2085 * 1402 143 21 13 chr12 97522168 97522327 -46264128 + Tigger5 DNA MER2_type 2085 2248 -75 1999 163 0 3 chr12 97522327 97522640 -46263815 - AluJo SINE Alu 0 312 1 1402 143 21 13 chr12 97522640 97522717 -46263738 + Tigger5 DNA MER2_type 2248 2323 0 225 189 56 89 chr12 97522717 97522803 -46263652 + MER69 DNA AcHobo 2441 2523 -3 285 29 0 0 chr12 97523025 97523059 -46263396 + (CA)n Simple_repeat Simple_repeat 2 35 0 1536 152 95 4 chr12 97523656 97523920 -46262535 + AluJb SINE Alu 1 288 -24 264 62 0 0 chr12 97523928 97523960 -46262495 + U2 snRNA snRNA 1 32 -156 28 0 0 0 chr12 97523967 97523995 -46262460 + AT_rich Low_complexity Low_complexity 1 28 0 2287 103 3 10 chr12 97524618 97524930 -46261525 - AluSq SINE Alu -2 311 2 490 310 116 60 chr12 97525374 97525709 -46260746 - L2 LINE L2 0 3272 2919 1797 179 54 80 chr12 97525844 97525981 -46260474 + L1ME2 LINE L1 5642 5781 -383 1931 138 7 7 chr12 97525981 97526278 -46260177 + AluSx SINE Alu 1 297 -15 1797 179 54 80 chr12 97526278 97526330 -46260125 + L1ME2 LINE L1 5781 5833 -331 2010 122 21 3 chr12 97526330 97526618 -46259837 + AluSp SINE Alu 1 293 -20 1797 179 54 80 chr12 97526618 97526963 -46259492 + L1ME2 LINE L1 5833 6163 -1 250 363 44 0 chr12 97526977 97527090 -46259365 - L2 LINE L2 -567 2747 2630 2123 129 10 10 chr12 97527456 97527766 -46258689 + AluSx SINE Alu 1 310 -2 273 224 53 13 chr12 97528007 97528083 -46258372 - MIR3 SINE MIR 0 208 130 282 259 83 19 chr12 97528143 97528251 -46258204 - MIR SINE MIR -39 223 109 940 245 50 70 chr12 97528287 97528704 -46257751 + MLT1J2 LTR MaLR 38 446 -4 405 281 0 26 chr12 97528741 97528855 -46257600 - L2 LINE L2 -5 3308 3198 358 299 170 48 chr12 97529792 97530103 -46256352 - MLT1K LTR MaLR -164 424 76 180 0 0 0 chr12 97530143 97530163 -46256292 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 240 246 96 91 chr12 97530827 97531026 -46255429 - MLT1K LTR MaLR -14 574 375 200 203 0 17 chr12 97531398 97531437 -46255018 + (TAA)n Simple_repeat Simple_repeat 1 40 -18 2415 58 0 0 chr12 97531437 97531728 -46254727 + AluY SINE Alu 1 291 -20 200 203 0 17 chr12 97531728 97531747 -46254708 + (TAA)n Simple_repeat Simple_repeat 40 58 0 2075 126 14 0 chr12 97532042 97532335 -46254120 - AluSx SINE Alu -15 297 1 1836 168 3 0 chr12 97532374 97532672 -46253783 - AluJb SINE Alu -11 301 3 3054 93 63 101 chr12 97532673 97533305 -46253150 - LOR1-int LTR ERV1 -6436 1684 1077 572 134 0 0 chr12 97533315 97533397 -46253058 + AluS SINE Alu 225 306 -5 1102 226 84 87 chr12 97533406 97533989 -46252466 - MER45C DNA AcHobo -320 633 1 217 171 0 0 chr12 97533999 97534034 -46252421 - MER5A DNA MER1_type -117 72 38 287 104 21 0 chr12 97534047 97534095 -46252360 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 2474 99 0 0 chr12 97534125 97534438 -46252017 - AluSq SINE Alu 0 313 1 234 278 38 53 chr12 97534492 97534625 -46251830 + MIR SINE MIR 124 254 -8 642 261 45 0 chr12 97535358 97535515 -46250940 - MER5B DNA MER1_type -14 164 1 808 141 33 0 chr12 97535969 97536090 -46250365 - FLAM_C SINE Alu -16 127 3 191 317 17 17 chr12 97536288 97536348 -46250107 - L2 LINE L2 -8 3264 3205 295 146 0 0 chr12 97536454 97536502 -46249953 - Alu SINE Alu -254 48 1 * 1677 149 147 45 chr12 97536502 97536685 -46249770 - MSTA LTR MaLR -39 389 226 2077 98 32 0 chr12 97536685 97536997 -46249458 - AluSx SINE Alu 0 312 1 1677 149 147 45 chr12 97536997 97537166 -46249289 - MSTA LTR MaLR -202 226 1 226 386 16 0 chr12 97537189 97537316 -46249139 - L2 LINE L2 -1384 1930 1802 881 178 101 0 chr12 97537421 97537590 -46248865 + MER5A DNA MER1_type 1 186 -3 324 211 300 0 chr12 97538365 97538455 -46248000 + L2 LINE L2 3196 3312 -1 885 234 29 0 chr12 97538567 97538738 -46247717 - MER45A DNA AcHobo 0 178 3 1828 129 57 18 chr12 97538844 97538999 -46247456 - AluSx SINE Alu -21 291 119 201 39 0 0 chr12 97538999 97539025 -46247430 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1828 129 57 18 chr12 97539025 97539149 -46247306 - AluSx SINE Alu -193 119 1 371 248 17 26 chr12 97539256 97539373 -46247082 + MLT1H LTR MaLR 47 162 -387 249 228 79 30 chr12 97539510 97539611 -46246844 + MLT1H LTR MaLR 428 533 -16 736 282 10 10 chr12 97539826 97540035 -46246420 - MIR SINE MIR -45 217 9 1966 134 7 0 chr12 97540066 97540357 -46246098 + AluJb SINE Alu 10 302 -10 229 278 0 0 chr12 97541389 97541443 -46245012 - MLT1K LTR MaLR -286 302 249 272 241 17 86 chr12 97541474 97541515 -46244940 - MLT1K LTR MaLR -471 117 75 1940 198 78 47 chr12 97541515 97542005 -46244450 + MLT1D LTR MaLR 1 505 0 272 241 17 86 chr12 97542005 97542079 -46244376 - MLT1K LTR MaLR -513 75 10 658 321 86 5 chr12 97542254 97542475 -46243980 + MIR SINE MIR 17 255 -7 1078 181 20 5 chr12 97542506 97542705 -46243750 + MIR SINE MIR 31 232 -30 2066 160 0 0 chr12 97543833 97544139 -46242316 - AluSx SINE Alu -6 306 1 381 241 55 118 chr12 97544145 97544218 -46242237 - LTR16A1 LTR ERVL 0 457 381 1944 156 3 0 chr12 97544218 97544513 -46241942 - AluJo SINE Alu -16 296 1 381 241 55 118 chr12 97544513 97544659 -46241796 - LTR16A1 LTR ERVL -76 381 252 1866 238 105 43 chr12 97544673 97545299 -46241156 + MER21B LTR ERV1 13 677 -186 227 222 22 0 chr12 97545300 97545345 -46241110 - LTR16A1 LTR ERVL -411 46 1 2273 186 67 7 chr12 97545351 97545786 -46240669 - LOR1b LTR ERV1 0 461 1 3994 131 113 40 chr12 97545789 97546057 -46240398 - LOR1b-int LTR ERV1 -2 8118 7871 2054 148 0 7 chr12 97546057 97546354 -46240101 + AluSx SINE Alu 1 295 -17 3994 131 113 40 chr12 97546354 97546790 -46239665 - LOR1b-int LTR ERV1 -249 7871 7362 4530 162 2 52 chr12 97546805 97547541 -46238914 - LOR1-int LTR ERV1 -2828 3930 3238 1715 172 7 16 chr12 97547541 97547844 -46238611 - AluJo SINE Alu -2 310 11 4530 162 2 52 chr12 97547844 97547929 -46238526 - LOR1-int LTR ERV1 -3520 3238 3150 7331 126 45 68 chr12 97547939 97548337 -46238118 - LOR1-int LTR ERV1 -2921 5199 4793 241 138 17 52 chr12 97548337 97548395 -46238060 + L1PA2 LINE L1 6084 6139 -16 * 248 35 0 0 chr12 97548366 97548424 -46238031 + L1PA6 LINE L1 6110 6167 0 * 7331 126 45 68 chr12 97548395 97549353 -46237102 - LOR1-int LTR ERV1 -3327 4793 3846 693 24 0 0 chr12 97549369 97549452 -46237003 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 358 212 0 15 chr12 97549452 97549509 -46236946 - AluJ/FRAM SINE Alu -18 284 227 190 296 0 0 chr12 97550250 97550294 -46236161 + L2 LINE L2 2730 2773 -541 21490 114 5 7 chr12 97550338 97553014 -46233441 - L1PA10 LINE L1 -1 6167 3499 2649 48 0 0 chr12 97553014 97553325 -46233130 - AluY SINE Alu 0 311 1 21490 114 5 7 chr12 97553325 97554725 -46231730 - L1PA10 LINE L1 -2669 3499 2098 3381 216 92 55 chr12 97554727 97556014 -46230441 + L1ME1 LINE L1 3703 5255 -911 1900 164 0 0 chr12 97556014 97556300 -46230155 - AluSx SINE Alu -2 310 25 3381 216 92 55 chr12 97556300 97557242 -46229213 + L1ME1 LINE L1 5255 6161 -5 258 300 99 76 chr12 97558428 97558511 -46227944 + L2 LINE L2 2898 2978 -294 2184 125 90 3 chr12 97558511 97558846 -46227609 + THE1B LTR MaLR 1 364 0 258 300 99 76 chr12 97558846 97559025 -46227430 + L2 LINE L2 2978 3166 -106 2004 180 28 57 chr12 97559151 97559657 -46226798 + Tigger3(Golem) DNA MER2_type 2538 3028 -1 2081 123 0 13 chr12 97559742 97560044 -46226411 + AluSx SINE Alu 1 298 -14 1278 197 0 0 chr12 97560052 97560260 -46226195 + AluJo SINE Alu 1 208 -104 990 291 95 33 chr12 97560427 97560850 -46225605 - L2 LINE L2 -1 3312 2864 2164 279 94 48 chr12 97560937 97561850 -46224605 - L2 LINE L2 -2209 1105 151 2331 92 0 13 chr12 97562099 97562405 -46224050 + AluY SINE Alu 2 303 -8 2236 90 3 0 chr12 97562522 97562812 -46223643 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr12 97562901 97562923 -46223532 + AT_rich Low_complexity Low_complexity 1 22 0 437 88 0 0 chr12 97563615 97563672 -46222783 - Alu SINE Alu -15 295 239 1901 136 33 0 chr12 97563721 97564033 -46222422 + AluSx SINE Alu 1 321 0 1932 141 14 10 chr12 97564397 97564688 -46221767 + AluJb SINE Alu 1 292 -20 1847 178 3 0 chr12 97564688 97564981 -46221474 + AluJb SINE Alu 1 294 -18 2087 131 0 0 chr12 97564981 97565264 -46221191 + AluSx SINE Alu 1 283 -29 523 163 0 0 chr12 97565264 97565350 -46221105 + AluSg/x SINE Alu 215 300 -9 26 30 0 0 chr12 97565368 97565401 -46221054 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr12 97565776 97565816 -46220639 + AT_rich Low_complexity Low_complexity 1 40 0 573 299 72 80 chr12 97566061 97566436 -46220019 - L2 LINE L2 -1 3271 2900 2002 99 78 3 chr12 97566474 97566757 -46219698 + AluSq SINE Alu 1 304 -9 2399 65 13 3 chr12 97566932 97567240 -46219215 - AluY SINE Alu 0 311 1 1452 138 5 0 chr12 97567579 97567789 -46218666 + AluSg/x SINE Alu 84 294 -18 362 102 0 0 chr12 97567791 97567840 -46218615 + MSTA LTR MaLR 380 428 0 415 211 42 63 chr12 97568160 97568302 -46218153 - MER104 DNA Tc2 -4 176 38 234 295 23 101 chr12 97568347 97568476 -46217979 + MLT1K LTR MaLR 277 395 -193 272 237 17 0 chr12 97568554 97568613 -46217842 + MLT1K LTR MaLR 529 588 0 403 307 100 18 chr12 97568681 97568961 -46217494 + L2 LINE L2 2456 2758 -556 1213 156 15 5 chr12 97569034 97569239 -46217216 - AluJb SINE Alu -19 293 87 188 278 151 48 chr12 97569241 97569367 -46217088 + L2 LINE L2 2926 3064 -208 1947 137 97 51 chr12 97569654 97569921 -46216534 - MLT1B LTR MaLR 0 390 100 2324 132 33 30 chr12 97569921 97570284 -46216171 + THE1B LTR MaLR 1 364 0 1947 137 97 51 chr12 97570284 97570389 -46216066 - MLT1B LTR MaLR -290 100 1 1129 246 26 26 chr12 97570591 97570648 -46215807 + MLT1C LTR MaLR 122 178 -289 1890 164 10 6 chr12 97570648 97570959 -46215496 + AluJo SINE Alu 1 312 0 1129 246 26 26 chr12 97570959 97571246 -46215209 + MLT1C LTR MaLR 177 466 -1 2235 164 3 0 chr12 97571409 97571745 -46214710 + MER1B DNA MER1_type 1 337 0 279 292 14 0 chr12 97572355 97572427 -46214028 + GA-rich Low_complexity Low_complexity 5 77 0 323 125 0 0 chr12 97572479 97572527 -46213928 - MLT2D LTR ERVL 0 414 367 180 176 0 0 chr12 97572527 97572561 -46213894 + (TG)n Simple_repeat Simple_repeat 2 35 0 1114 101 0 7 chr12 97573088 97573237 -46213218 - MER1B DNA MER1_type 0 339 192 439 85 17 0 chr12 97573230 97573289 -46213166 - MLT2D LTR ERVL -249 165 106 * 1670 180 0 33 chr12 97573290 97573595 -46212860 - AluJb SINE Alu -17 295 1 238 330 78 52 chr12 97573605 97573875 -46212580 - L2 LINE L2 -1098 2216 1940 1039 120 97 11 chr12 97573877 97574052 -46212403 - L1MC4 LINE L1 -1080 6962 6773 893 229 5 0 chr12 97576140 97576328 -46210127 - L1MC4 LINE L1 -469 7573 7385 21 0 0 0 chr12 97576862 97576883 -46209572 + AT_rich Low_complexity Low_complexity 1 21 0 204 70 23 70 chr12 97577298 97577341 -46209114 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 252 333 54 9 chr12 97577472 97577583 -46208872 + L2 LINE L2 3165 3280 -33 2092 116 7 13 chr12 97577648 97577949 -46208506 - AluSx SINE Alu -13 299 1 244 231 77 0 chr12 97578017 97578082 -46208373 - L2 LINE L2 -12 3260 3191 1982 107 16 55 chr12 97578441 97578750 -46207705 + AluSx SINE Alu 1 297 -15 1918 135 0 85 chr12 97579294 97579635 -46206820 + AluJb SINE Alu 1 312 0 2959 58 0 0 chr12 97580281 97580640 -46205815 - L1P2 LINE L1 -343 5811 5453 2346 83 0 7 chr12 97581048 97581348 -46205107 - AluSc SINE Alu -11 298 1 23 33 0 0 chr12 97582078 97582108 -46204347 + AT_rich Low_complexity Low_complexity 1 30 0 184 238 0 95 chr12 97582559 97582622 -46203833 - MIR3 SINE MIR -12 196 140 1261 107 0 17 chr12 97583524 97583702 -46202753 + AluSg/x SINE Alu 85 259 -53 1803 168 0 28 chr12 97584630 97584951 -46201504 + AluSx SINE Alu 1 312 0 813 226 0 39 chr12 97584955 97585136 -46201319 + FRAM SINE Alu 1 169 -7 587 103 78 17 chr12 97585344 97585460 -46200995 + AluY SINE Alu 1 123 -188 2189 91 29 16 chr12 97586262 97586569 -46199886 - AluY SINE Alu 0 311 1 888 134 0 15 chr12 97586579 97586713 -46199742 - FRAM SINE Alu -20 156 25 1630 189 3 16 chr12 97586961 97587268 -46199187 + AluJo SINE Alu 1 303 -9 3062 135 21 17 chr12 97587296 97587779 -46198676 - MER31A LTR ERV1 0 485 1 220 276 0 17 chr12 97588187 97588245 -46198210 + L2 LINE L2 3237 3293 -20 1734 209 17 9 chr12 97588255 97588600 -46197855 + MLT1A1 LTR MaLR 15 362 -3 455 222 177 0 chr12 97588922 97589133 -46197322 - MER58 DNA MER1_type -8 2412 84 2439 90 0 10 chr12 97589134 97589445 -46197010 + AluSx SINE Alu 1 308 -4 2170 163 0 3 chr12 97589445 97589826 -46196629 + L1 LINE L1 4640 5019 -1127 1106 140 0 0 chr12 97589989 97590153 -46196302 + AluSg/x SINE Alu 131 294 -18 378 252 73 101 chr12 97590410 97590628 -46195827 + L2 LINE L2 3102 3313 0 947 150 0 0 chr12 97590875 97591008 -46195447 - FLAM_C SINE Alu 0 133 1 368 293 3 22 chr12 97591734 97592042 -46194413 + G-rich Low_complexity Low_complexity 1 302 0 189 141 16 47 chr12 97592149 97592213 -46194242 + G-rich Low_complexity Low_complexity 2 63 0 893 204 0 0 chr12 97592282 97592444 -46194011 - AluSc SINE Alu -51 258 97 1401 172 107 4 chr12 97592634 97592884 -46193571 + AluJb SINE Alu 1 280 -32 468 0 0 0 chr12 97592884 97592936 -46193519 + (CA)n Simple_repeat Simple_repeat 2 53 0 1891 124 10 24 chr12 97592949 97593247 -46193208 + AluSx SINE Alu 2 295 -17 2315 97 0 0 chr12 97593333 97593631 -46192824 + AluSx SINE Alu 1 298 -14 905 134 0 0 chr12 97593669 97593796 -46192659 - FLAM_C SINE Alu -14 129 3 252 271 17 0 chr12 97593994 97594053 -46192402 - L2 LINE L2 -8 3264 3205 185 207 17 69 chr12 97594099 97594157 -46192298 + MIR SINE MIR 87 141 -67 22 0 0 0 chr12 97594334 97594356 -46192099 + AT_rich Low_complexity Low_complexity 1 22 0 294 286 12 12 chr12 97594647 97594731 -46191724 + Charlie2b DNA MER1_type 568 651 -2131 590 155 39 84 chr12 97594868 97595023 -46191432 + Charlie2b DNA MER1_type 2635 2782 0 212 333 124 0 chr12 97595715 97595820 -46190635 - L2 LINE L2 -16 3297 3180 200 211 0 53 chr12 97596454 97596511 -46189944 + A-rich Low_complexity Low_complexity 5 58 0 288 317 107 64 chr12 97596554 97596835 -46189620 - L2 LINE L2 -882 2432 2140 640 163 73 39 chr12 97597549 97597727 -46188728 + L1PA13 LINE L1 5980 6163 0 1700 173 0 7 chr12 97598219 97598537 -46187918 - AluJo SINE Alu 0 316 1 1296 305 45 26 chr12 97598766 97599189 -46187266 - MLT1C LTR MaLR -2 465 35 234 207 0 0 chr12 97600276 97600334 -46186121 + (CA)n Simple_repeat Simple_repeat 1 58 0 269 318 0 0 chr12 97600569 97600635 -46185820 - L2 LINE L2 -35 3237 3172 1386 149 82 78 chr12 97601184 97601465 -46184990 - AluJo SINE Alu -30 282 1 534 235 0 37 chr12 97601470 97601606 -46184849 - FLAM_A SINE Alu -1 132 2 4297 137 9 9 chr12 97601883 97602576 -46183879 - SVA Other Other -3 1383 691 2073 108 11 0 chr12 97603362 97603641 -46182814 + AluSx SINE Alu 21 302 -10 1222 155 0 0 chr12 97603726 97603913 -46182542 + AluJb SINE Alu 1 187 -125 973 271 73 26 chr12 97604304 97604687 -46181768 + L1ME LINE L1 5423 5823 -339 500 261 25 8 chr12 97604687 97604806 -46181649 - L2 LINE L2 -2 3311 3191 2202 125 0 0 chr12 97605062 97605365 -46181090 + AluSx SINE Alu 1 303 -9 234 258 15 15 chr12 97605522 97605588 -46180867 + L1MEc LINE L1 37 102 -6294 381 310 123 23 chr12 97606142 97606313 -46180142 + MIR SINE MIR 14 201 -61 2353 68 3 3 chr12 97606370 97606696 -46179759 - AluSp SINE Alu 0 313 1 261 302 116 16 chr12 97606702 97606831 -46179624 + MER5A DNA MER1_type 1 142 -47 1976 117 3 17 chr12 97606897 97607187 -46179268 - AluSx SINE Alu -25 287 2 2142 75 6 103 chr12 97607590 97607921 -46178534 - AluSq SINE Alu -14 299 1 2094 110 0 17 chr12 97607997 97608289 -46178166 + AluSc SINE Alu 11 297 -12 1448 165 26 68 chr12 97608554 97608863 -46177592 - AluJo SINE Alu -16 296 1 204 163 20 20 chr12 97609374 97609423 -46177032 + (CTATT)n Simple_repeat Simple_repeat 4 52 0 186 285 92 46 chr12 97609794 97609924 -46176531 + MIR SINE MIR 122 257 -5 399 259 129 0 chr12 97610454 97610593 -46175862 - MIR SINE MIR -18 244 88 485 190 121 35 chr12 97610971 97611087 -46175368 + FLAM_C SINE Alu 1 126 -7 1610 134 131 4 chr12 97611120 97611388 -46175067 - AluJo SINE Alu 0 302 1 259 325 50 0 chr12 97611586 97611666 -46174789 - MIR SINE MIR -87 121 38 383 164 55 82 chr12 97611959 97611982 -46174473 + LTR16A1 LTR ERVL 316 338 -119 2049 138 6 3 chr12 97611982 97612293 -46174162 - AluSx SINE Alu 0 312 1 383 164 55 82 chr12 97612293 97612415 -46174040 + LTR16A1 LTR ERVL 338 457 0 651 286 86 38 chr12 97612419 97612895 -46173560 - L2 LINE L2 -187 3126 2632 687 170 81 0 chr12 97613242 97613382 -46173073 + MIR SINE MIR 6 161 -47 888 184 0 0 chr12 97613385 97613532 -46172923 + FRAM SINE Alu 13 159 -17 2324 97 3 0 chr12 97614076 97614375 -46172080 - AluSc SINE Alu -9 300 1 285 255 108 15 chr12 97614375 97614547 -46171908 - L1MDa LINE L1 -4786 1640 1356 2144 165 0 23 chr12 97614547 97614892 -46171563 - MER1B DNA MER1_type 0 337 1 810 319 86 38 chr12 97614895 97615682 -46170773 - L1MDa LINE L1 -5543 1064 240 382 323 63 21 chr12 97616277 97616466 -46169989 + MIR SINE MIR 22 218 -44 579 181 10 5 chr12 97618231 97618346 -46168109 + L1MB7 LINE L1 6032 6142 -32 1547 159 4 16 chr12 97618369 97618620 -46167835 + AluSx SINE Alu 43 290 -22 247 59 0 0 chr12 97618620 97618654 -46167801 + L1MB7 LINE L1 6133 6166 -18 29 47 0 0 chr12 97619091 97619134 -46167321 + AT_rich Low_complexity Low_complexity 1 43 0 267 327 71 9 chr12 97619580 97619693 -46166762 - L2 LINE L2 -8 3264 3145 574 179 0 49 chr12 97620778 97620901 -46165554 + Tigger2a DNA MER2_type 1 117 -317 313 217 54 0 chr12 97622059 97622151 -46164304 + AluJ/FLAM SINE Alu 1 97 -205 205 109 0 109 chr12 97622477 97622523 -46163932 + (T)n Simple_repeat Simple_repeat 1 41 0 3018 128 8 30 chr12 97622528 97622717 -46163738 - L1PB1 LINE L1 -1 6150 5958 2032 146 3 3 chr12 97622717 97623019 -46163436 - AluSx SINE Alu -10 302 1 3018 128 8 30 chr12 97623019 97623335 -46163120 - L1PB1 LINE L1 -193 5958 5656 2371 92 0 9 chr12 97623554 97623870 -46162585 - AluSq SINE Alu 0 313 1 1016 213 18 0 chr12 97624223 97624387 -46162068 - FAM SINE Alu -8 167 1 2145 122 10 0 chr12 97625484 97625779 -46160676 - AluSx SINE Alu -12 300 3 22 0 0 0 chr12 97626523 97626545 -46159910 + AT_rich Low_complexity Low_complexity 1 22 0 214 286 118 34 chr12 97627411 97627530 -46158925 + MIR SINE MIR 18 146 -116 216 241 0 19 chr12 97628358 97628412 -46158043 + (TG)n Simple_repeat Simple_repeat 2 54 0 2042 123 0 7 chr12 97628727 97629012 -46157443 + AluSx SINE Alu 1 283 -29 290 25 0 25 chr12 97629015 97629055 -46157400 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 265 312 72 16 chr12 97629406 97629531 -46156924 + MIR SINE MIR 82 213 -49 214 314 35 58 chr12 97629561 97629647 -46156808 - L2 LINE L2 -6 3266 3183 754 128 9 0 chr12 97630385 97630494 -46155961 - FLAM_C SINE Alu -32 111 2 521 330 67 0 chr12 97631257 97631451 -46155004 + MIR SINE MIR 12 218 -44 303 264 74 16 chr12 97631960 97632081 -46154374 - L1M LINE L1 -940 5419 5292 238 308 53 0 chr12 97632101 97632234 -46154221 - L1M4 LINE L1 -810 5336 5197 1769 154 4 18 chr12 97632369 97632648 -46153807 - AluJo SINE Alu -37 275 1 1593 170 8 0 chr12 97632739 97633004 -46153451 + AluJb SINE Alu 17 283 -29 22 0 0 0 chr12 97633077 97633099 -46153356 + AT_rich Low_complexity Low_complexity 1 22 0 1181 194 9 9 chr12 97633358 97633569 -46152886 - MLT1A1 LTR MaLR -7 358 148 282 206 0 0 chr12 97633573 97633636 -46152819 + (TA)n Simple_repeat Simple_repeat 1 63 0 878 172 19 6 chr12 97633683 97633840 -46152615 - MLT1A1 LTR MaLR -206 159 1 232 252 88 102 chr12 97635106 97635147 -46151308 - MER5A DNA MER1_type -1 188 148 1440 204 48 70 chr12 97635147 97635520 -46150935 + MLT1A1 LTR MaLR 1 365 0 232 252 88 102 chr12 97635520 97635625 -46150830 - MER5A DNA MER1_type -41 148 44 186 43 0 0 chr12 97636678 97636701 -46149754 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 651 225 16 0 chr12 97636797 97636926 -46149529 + MER7A DNA MER2_type 1 129 -217 242 326 92 10 chr12 97637059 97637157 -46149298 - MIR3 SINE MIR -95 113 8 290 260 39 19 chr12 97637974 97638078 -46148377 - Charlie4 DNA MER1_type -32 1929 1824 251 190 52 17 chr12 97638188 97638246 -46148209 - AluS SINE Alu -243 60 1 33 90 0 0 chr12 97638768 97638857 -46147598 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr12 97638921 97638943 -46147512 + AT_rich Low_complexity Low_complexity 1 22 0 552 60 0 0 chr12 97638943 97639010 -46147445 - L1PA8 LINE L1 -6 6166 6100 695 142 35 18 chr12 97639539 97639652 -46146803 + AluSg/x SINE Alu 169 283 -27 411 213 106 11 chr12 97640444 97640538 -46145917 + MIR SINE MIR 49 151 -111 194 250 100 0 chr12 97640939 97640999 -46145456 - MIR SINE MIR -55 153 88 334 307 102 82 chr12 97641590 97641932 -46144523 + L1M2 LINE L1 1056 1404 -5445 227 215 0 54 chr12 97641939 97642088 -46144367 - AluSg/x SINE Alu -24 276 136 211 136 23 0 chr12 97643038 97643082 -46143373 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 763 157 43 0 chr12 97643091 97643231 -46143224 + L1MB7 LINE L1 5989 6134 -50 5239 59 16 16 chr12 97643670 97644628 -46141827 - L1PA7 LINE L1 -249 5905 4959 1872 126 0 40 chr12 97645066 97645367 -46141088 - AluJo SINE Alu -23 289 1 32 26 0 0 chr12 97645380 97645419 -46141036 + AT_rich Low_complexity Low_complexity 1 39 0 12094 124 16 3 chr12 97646130 97648739 -46137716 + L1PA10 LINE L1 3544 6168 0 428 279 35 50 chr12 97648746 97648947 -46137508 - L1M4 LINE L1 -2430 3716 3519 208 139 28 0 chr12 97648990 97649026 -46137429 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 22 0 0 0 chr12 97649532 97649554 -46136901 + AT_rich Low_complexity Low_complexity 1 22 0 222 333 0 12 chr12 97650538 97650619 -46135836 - MIR3 SINE MIR -30 178 99 199 347 171 6 chr12 97650698 97650868 -46135587 + L2 LINE L2 3075 3272 0 843 218 192 29 chr12 97651105 97651486 -46134969 - L2 LINE L2 0 3313 2871 1735 186 16 0 chr12 97651587 97651893 -46134562 + AluJo SINE Alu 1 311 -1 1086 255 71 47 chr12 97652165 97652637 -46133818 - Charlie8 DNA MER1_type -2135 282 1 515 265 97 22 chr12 97653076 97653261 -46133194 - MLT1K LTR MaLR -39 549 351 571 261 187 15 chr12 97654117 97654320 -46132135 - MIR SINE MIR 0 262 25 330 87 0 0 chr12 97654329 97654375 -46132080 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 971 300 70 14 chr12 97654382 97654825 -46131630 - L2 LINE L2 -22 3291 2824 2202 66 0 0 chr12 97654826 97655084 -46131371 - AluSx SINE Alu -54 258 1 2031 100 4 0 chr12 97655251 97655530 -46130925 + AluSx SINE Alu 1 280 -32 221 371 31 0 chr12 97655780 97655877 -46130578 - MIR SINE MIR -60 148 49 239 122 20 0 chr12 97657884 97657933 -46128522 + CT-rich Low_complexity Low_complexity 1 50 0 219 273 0 0 chr12 97658167 97658222 -46128233 + C-rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr12 97658252 97658275 -46128180 + GC_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr12 97660570 97660598 -46125857 + (T)n Simple_repeat Simple_repeat 1 28 0 229 260 83 0 chr12 97663735 97663831 -46122624 - MIR SINE MIR -13 249 146 216 345 52 20 chr12 97664952 97665051 -46121404 - MIR SINE MIR -11 197 84 288 53 0 0 chr12 97665051 97665089 -46121366 + (CA)n Simple_repeat Simple_repeat 1 38 0 216 345 52 20 chr12 97665089 97665143 -46121312 - MIR SINE MIR -124 84 33 2278 108 10 0 chr12 97666708 97667014 -46119441 + AluSx SINE Alu 1 309 -3 427 194 148 0 chr12 97667551 97667659 -46118796 - MER63 DNA MER1_type -86 750 1 238 313 18 6 chr12 97667992 97668095 -46118360 + CT-rich Low_complexity Low_complexity 1 104 0 273 250 233 17 chr12 97668193 97668365 -46118090 - MIR SINE MIR -7 255 47 223 307 37 66 chr12 97668596 97668837 -46117618 - L2 LINE L2 -454 2860 2627 214 244 286 17 chr12 97669068 97669187 -46117268 + MIR3 SINE MIR 30 180 -28 371 345 97 15 chr12 97670137 97670287 -46116168 - MIR SINE MIR -20 242 69 2546 169 29 41 chr12 97670287 97670803 -46115652 - LTR54 LTR ERV1 0 510 1 371 345 97 15 chr12 97670803 97670858 -46115597 - MIR SINE MIR -193 69 20 2372 111 0 0 chr12 97671125 97671431 -46115024 - AluSq SINE Alu -7 306 1 732 229 122 57 chr12 97671540 97671924 -46114531 - MLT1I LTR MaLR 0 409 1 1185 171 64 115 chr12 97672140 97672497 -46113958 + MER2 DNA MER2_type 4 342 -2 209 179 0 0 chr12 97673127 97673166 -46113289 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 401 337 22 90 chr12 97673166 97673254 -46113201 - L2 LINE L2 0 3272 3180 2192 122 7 0 chr12 97673254 97673557 -46112898 + AluSx SINE Alu 1 305 -7 401 337 22 90 chr12 97673557 97673768 -46112687 - L2 LINE L2 -92 3180 2998 2451 77 0 0 chr12 97673768 97674068 -46112387 + AluY SINE Alu 1 300 -11 401 337 22 90 chr12 97674068 97674123 -46112332 - L2 LINE L2 -274 2998 2941 225 358 28 28 chr12 97674161 97674340 -46112115 - L2 LINE L2 -427 2887 2709 1646 204 69 5 chr12 97674421 97674827 -46111628 + Charlie4a DNA MER1_type 22 453 -55 2178 111 0 23 chr12 97674984 97675290 -46111165 - AluSx SINE Alu -13 299 1 186 71 0 0 chr12 97675915 97675943 -46110512 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2099 101 61 0 chr12 97676340 97676618 -46109837 + AluSg SINE Alu 1 295 -15 2308 61 41 3 chr12 97676887 97677182 -46109273 + AluSg SINE Alu 5 310 0 210 154 0 0 chr12 97677610 97677649 -46108806 + A-rich Low_complexity Low_complexity 1 39 0 995 266 17 27 chr12 97678662 97678963 -46107492 - L1MC4a LINE L1 -1958 5850 5553 189 0 0 0 chr12 97679286 97679307 -46107148 + (T)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr12 97679816 97679862 -46106593 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 97680191 97680213 -46106242 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 97681626 97681662 -46104793 + AT_rich Low_complexity Low_complexity 1 36 0 186 103 0 0 chr12 97682196 97682225 -46104230 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 38 22 0 0 chr12 97682242 97682287 -46104168 + AT_rich Low_complexity Low_complexity 1 45 0 528 274 47 33 chr12 97682540 97682755 -46103700 - MIR SINE MIR -11 251 34 2097 148 0 0 chr12 97682914 97683219 -46103236 + AluSx SINE Alu 1 305 -7 967 207 247 30 chr12 97683348 97683699 -46102756 - L1MD3 LINE L1 -2 7993 5934 1817 137 50 7 chr12 97683704 97683981 -46102474 - AluSx SINE Alu -20 292 4 263 273 173 27 chr12 97684317 97684427 -46102028 - L2 LINE L2 -10 3303 3178 335 304 16 71 chr12 97684567 97684820 -46101635 - L2 LINE L2 -357 2956 2719 673 295 71 46 chr12 97684980 97685534 -46100921 - L1ME3A LINE L1 -295 5875 5303 1683 150 68 31 chr12 97685534 97685828 -46100627 - AluJo SINE Alu -5 307 3 673 295 71 46 chr12 97685828 97685876 -46100579 - L1ME3A LINE L1 -867 5303 5258 1849 193 63 19 chr12 97685944 97686323 -46100132 + MSTD LTR MaLR 1 396 0 861 279 62 34 chr12 97686585 97687118 -46099337 - L1ME3A LINE L1 -1226 4920 4373 1702 203 0 6 chr12 97687148 97687459 -46098996 - AluJb SINE Alu -3 309 1 305 255 26 46 chr12 97687481 97687634 -46098821 - L1ME3A LINE L1 -1768 4378 4229 1442 137 22 109 chr12 97687655 97687977 -46098478 - AluYb8 SINE Alu -24 294 1 1510 179 23 33 chr12 97688463 97688764 -46097691 - AluJo SINE Alu -14 298 1 394 336 83 22 chr12 97689615 97689844 -46096611 - MIR SINE MIR -7 255 13 190 0 67 0 chr12 97690556 97690586 -46095869 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1779 155 6 19 chr12 97691013 97691329 -46095126 - AluJb SINE Alu 0 312 1 873 228 38 22 chr12 97692273 97692691 -46093764 - MLT1J LTR MaLR -2 478 1 2054 150 0 0 chr12 97693028 97693321 -46093134 - AluSx SINE Alu -19 293 1 505 150 126 132 chr12 97693942 97694109 -46092346 + MER96B DNA MER1_type? 9 174 -243 1440 181 43 40 chr12 97694369 97694668 -46091787 - AluJo SINE Alu -11 301 2 225 222 19 0 chr12 97694748 97694802 -46091653 + MER96B DNA MER1_type? 192 246 -171 324 202 211 44 chr12 97694829 97694943 -46091512 + MIR SINE MIR 36 168 -94 185 312 156 0 chr12 97695238 97695315 -46091140 + MIR SINE MIR 83 171 -91 884 133 0 8 chr12 97695346 97695474 -46090981 + AluSq/x SINE Alu 1 127 -185 2082 130 0 0 chr12 97695478 97695790 -46090665 + AluSp SINE Alu 1 312 0 272 201 28 35 chr12 97695801 97695945 -46090510 + (TTAA)n Simple_repeat Simple_repeat 1 143 0 2250 168 73 3 chr12 97696140 97696510 -46089945 - MSTD LTR MaLR 0 396 1 705 215 30 85 chr12 97696556 97696599 -46089856 - MER5A DNA MER1_type 0 189 145 652 188 9 0 chr12 97696599 97696711 -46089744 - MER81 DNA DNA 0 114 2 705 215 30 85 chr12 97696711 97696867 -46089588 - MER5A DNA MER1_type -44 145 1 1530 176 9 151 chr12 97696867 97697292 -46089163 + MLT1A1 LTR MaLR 1 365 0 2198 99 3 23 chr12 97697602 97697905 -46088550 - AluSx SINE Alu -15 297 1 661 293 23 14 chr12 97698776 97698991 -46087464 + LTR16A LTR ERVL 229 445 -5 266 248 59 40 chr12 97699011 97699112 -46087343 + L2 LINE L2 3169 3271 -1 265 288 147 49 chr12 97699812 97699996 -46086459 + MIR SINE MIR 20 221 -41 815 234 25 4 chr12 97700026 97700261 -46086194 + L1MA7 LINE L1 6052 6291 0 606 28 0 0 chr12 97700726 97700798 -46085657 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 1217 90 0 6 chr12 97700798 97700976 -46085479 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 243 0 0 0 chr12 97700976 97701003 -46085452 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1947 116 7 0 chr12 97701004 97701281 -46085174 - AluSx SINE Alu -32 280 2 21 0 0 0 chr12 97701302 97701323 -46085132 + AT_rich Low_complexity Low_complexity 1 21 0 340 289 67 95 chr12 97701447 97701700 -46084755 + L2 LINE L2 3027 3272 0 2100 141 0 0 chr12 97701965 97702264 -46084191 - AluSx SINE Alu -13 299 1 435 281 66 0 chr12 97702264 97702385 -46084070 - MIR3 SINE MIR -14 194 66 632 252 186 92 chr12 97702416 97702872 -46083583 + MLT1K LTR MaLR 70 568 -20 543 261 36 6 chr12 97703709 97703874 -46082581 + L1ME3A LINE L1 5993 6162 -8 697 307 101 31 chr12 97704167 97704284 -46082171 + L2 LINE L2 2543 2650 -663 2949 97 51 10 chr12 97704284 97704695 -46081760 + MSTA LTR MaLR 1 428 0 697 307 101 31 chr12 97704695 97705219 -46081236 + L2 LINE L2 2650 3247 -66 644 185 9 0 chr12 97705236 97705344 -46081111 - FLAM_A SINE Alu -32 110 2 896 272 143 14 chr12 97705346 97705780 -46080675 - LTR33 LTR ERVL -28 493 4 225 175 0 0 chr12 97705815 97705855 -46080600 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 296 326 141 0 chr12 97705898 97706082 -46080373 - MIR SINE MIR -6 256 47 414 228 108 6 chr12 97706557 97706715 -46079740 - L1ME4a LINE L1 -209 5912 5739 2281 107 7 3 chr12 97706772 97707082 -46079373 - AluSx SINE Alu -1 311 1 233 178 44 0 chr12 97707292 97707337 -46079118 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 749 236 3 139 chr12 97707737 97707862 -46078593 + MIR SINE MIR 3 65 -197 1569 170 31 48 chr12 97707862 97708156 -46078299 - AluJo SINE Alu -23 289 1 749 236 3 139 chr12 97708156 97708331 -46078124 + MIR SINE MIR 65 262 0 673 235 206 0 chr12 97708391 97708595 -46077860 + Charlie8 DNA MER1_type 3 248 -2169 413 251 72 77 chr12 97708624 97708819 -46077636 - MLT1L LTR MaLR -11 604 411 1783 153 52 38 chr12 97709425 97709771 -46076684 + THE1C LTR MaLR 1 351 -24 22 35 0 0 chr12 97709771 97709800 -46076655 + AT_rich Low_complexity Low_complexity 1 29 0 854 21 0 0 chr12 97709800 97709894 -46076561 - L1PA3 LINE L1 -4 6151 6058 1348 201 10 100 chr12 97710027 97710080 -46076375 + MLT1A1 LTR MaLR 2 58 -307 2116 116 10 0 chr12 97710080 97710372 -46076083 - AluSx SINE Alu -17 295 1 1348 201 10 100 chr12 97710372 97710659 -46075796 + MLT1A1 LTR MaLR 58 297 -68 2264 92 3 3 chr12 97710659 97710952 -46075503 + AluSc SINE Alu 1 293 -16 1348 201 10 100 chr12 97710952 97711016 -46075439 + MLT1A1 LTR MaLR 297 365 0 2413 92 7 0 chr12 97711834 97712140 -46074315 + AluSx SINE Alu 1 308 -4 416 263 42 8 chr12 97712774 97712892 -46073563 + L2 LINE L2 2902 3023 -249 1642 152 121 3 chr12 97713044 97713334 -46073121 + MSTB LTR MaLR 1 324 -102 2340 141 97 0 chr12 97713336 97713726 -46072729 + MSTA LTR MaLR 1 428 0 183 308 0 0 chr12 97713755 97713807 -46072648 + L2 LINE L2 3262 3313 0 4595 175 44 32 chr12 97713983 97715676 -46070779 - L1MB7 LINE L1 0 6253 4546 3227 239 47 32 chr12 97715673 97715852 -46070603 - L1MB7 LINE L1 -3180 3035 2860 * 2701 111 0 52 chr12 97715852 97715964 -46070491 + L1PA16 LINE L1 5762 5878 -288 2157 112 7 0 chr12 97715964 97716251 -46070204 - AluSg SINE Alu -21 289 1 2701 111 0 52 chr12 97716251 97716560 -46069895 + L1PA16 LINE L1 5878 6161 -5 3227 239 47 32 chr12 97716560 97716599 -46069856 - L1MB7 LINE L1 -3355 2860 2823 2080 150 0 0 chr12 97716599 97716906 -46069549 + AluSx SINE Alu 1 307 -5 3227 239 47 32 chr12 97716906 97718022 -46068433 - L1MB7 LINE L1 -3392 2823 1731 396 271 31 74 chr12 97718049 97718307 -46068148 - L1MEc LINE L1 -4451 1945 1699 2170 129 55 25 chr12 97718546 97718910 -46067545 + THE1C LTR MaLR 1 375 0 4335 92 12 10 chr12 97718927 97719528 -46066927 + THE1C-int LTR MaLR 979 1580 0 1197 112 76 58 chr12 97719528 97719704 -46066751 + THE1C LTR MaLR 1 183 -192 2263 100 3 0 chr12 97719704 97720013 -46066442 + AluSp SINE Alu 1 310 -3 1197 112 76 58 chr12 97720013 97720059 -46066396 + THE1C LTR MaLR 183 227 -148 1765 149 109 32 chr12 97720288 97720636 -46065819 + THE1C LTR MaLR 1 375 0 425 246 144 7 chr12 97720925 97721195 -46065260 - L1ME LINE L1 -463 6093 5736 22 0 0 0 chr12 97721220 97721242 -46065213 + AT_rich Low_complexity Low_complexity 1 22 0 714 260 89 101 chr12 97721835 97722431 -46064024 - L1ME LINE L1 -2880 3660 3072 2368 93 0 3 chr12 97722744 97723055 -46063400 - AluSg SINE Alu 0 310 1 333 293 82 57 chr12 97723089 97723407 -46063048 - L1ME LINE L1 -5126 1414 1089 353 326 42 42 chr12 97723879 97724069 -46062386 + MIR SINE MIR 60 249 -13 456 331 36 0 chr12 97726058 97726224 -46060231 + MIR SINE MIR 21 192 -70 22 70 0 0 chr12 97726598 97726641 -46059814 + AT_rich Low_complexity Low_complexity 1 43 0 1341 259 40 42 chr12 97728125 97728227 -46058228 + MLT1J2 LTR MaLR 1 102 -348 2537 144 29 83 chr12 97728227 97728742 -46057713 - LTR45B LTR ERV1 0 489 3 1341 259 40 42 chr12 97728742 97729090 -46057365 + MLT1J2 LTR MaLR 102 450 0 240 318 99 26 chr12 97729820 97729971 -46056484 + L2 LINE L2 2928 3089 -183 216 0 0 0 chr12 97730130 97730154 -46056301 + (CA)n Simple_repeat Simple_repeat 2 25 0 411 228 94 131 chr12 97730179 97730477 -46055978 - L1ME4a LINE L1 -224 5897 5611 478 236 45 70 chr12 97730482 97730613 -46055842 - MLT1L LTR MaLR -284 331 205 2562 118 28 6 chr12 97730613 97730969 -46055486 - THE1B LTR MaLR 0 364 1 478 236 45 70 chr12 97730969 97731036 -46055419 - MLT1L LTR MaLR -410 205 138 1911 157 0 13 chr12 97731582 97731888 -46054567 + AluJb SINE Alu 1 302 -10 25 0 0 0 chr12 97732756 97732781 -46053674 + AT_rich Low_complexity Low_complexity 1 25 0 1900 167 22 48 chr12 97733147 97733467 -46052988 + MLT1A2 LTR MaLR 1 311 -63 2085 131 7 0 chr12 97733467 97733757 -46052698 + AluSx SINE Alu 1 292 -20 1900 167 22 48 chr12 97733757 97733807 -46052648 + MLT1A2 LTR MaLR 311 361 -13 185 263 105 13 chr12 97734122 97734198 -46052257 - L2 LINE L2 -173 3099 3017 2496 158 65 0 chr12 97734361 97734761 -46051694 + MSTB LTR MaLR 1 426 0 21 36 0 0 chr12 97734770 97734798 -46051657 + AT_rich Low_complexity Low_complexity 1 28 0 1208 131 0 0 chr12 97734950 97735125 -46051330 - AluSg/x SINE Alu -12 300 126 21 36 0 0 chr12 97735312 97735340 -46051115 + AT_rich Low_complexity Low_complexity 1 28 0 180 111 0 0 chr12 97735355 97735382 -46051073 + (TATG)n Simple_repeat Simple_repeat 4 30 0 267 217 0 0 chr12 97735435 97735495 -46050960 + (CA)n Simple_repeat Simple_repeat 2 61 0 193 289 13 13 chr12 97735704 97735780 -46050675 - MIR SINE MIR -4 258 183 811 166 4 179 chr12 97735922 97736073 -46050382 - MER5A DNA MER1_type 0 189 90 2493 91 0 0 chr12 97736073 97736380 -46050075 - AluSc SINE Alu -2 307 1 811 166 4 179 chr12 97736380 97736457 -46049998 - MER5A DNA MER1_type -99 90 1 221 180 0 40 chr12 97736534 97736584 -46049871 + CT-rich Low_complexity Low_complexity 5 52 0 1149 233 27 11 chr12 97737043 97737305 -46049150 - MLT1J LTR MaLR -242 269 4 300 346 19 9 chr12 97737310 97737417 -46049038 - MIR SINE MIR -109 153 46 2168 209 50 61 chr12 97737538 97738061 -46048394 + MLT2B3 LTR ERVL 1 519 -35 201 74 0 0 chr12 97738061 97738088 -46048367 + (CA)n Simple_repeat Simple_repeat 1 27 0 2168 209 50 61 chr12 97738088 97738124 -46048331 + MLT2B3 LTR ERVL 519 554 0 2074 124 3 58 chr12 97738719 97739049 -46047406 + AluSx SINE Alu 1 312 0 771 147 0 0 chr12 97739112 97739214 -46047241 - AluSq/x SINE Alu -209 103 2 1835 141 40 26 chr12 97739654 97740032 -46046423 + Tigger3(Golem) DNA MER2_type 1 3028 -1 278 256 44 11 chr12 97740145 97740235 -46046220 + L2 LINE L2 2562 2654 -660 318 219 70 125 chr12 97740243 97740371 -46046084 + LTR33A LTR ERVL 19 139 -384 180 0 0 0 chr12 97740501 97740521 -46045934 + (CAA)n Simple_repeat Simple_repeat 2 21 0 680 321 16 5 chr12 97740677 97740867 -46045588 - MER91A DNA MER1_type -1 195 4 1712 170 3 21 chr12 97741009 97741159 -46045296 - AluJo SINE Alu -28 284 140 2263 94 10 7 chr12 97741159 97741457 -46044998 - AluSp SINE Alu -14 299 1 1712 170 3 21 chr12 97741457 97741595 -46044860 - AluJo SINE Alu -172 140 1 714 244 47 0 chr12 97742503 97742675 -46043780 - MIR SINE MIR -72 190 11 2059 174 31 31 chr12 97742877 97742916 -46043539 - MLT2B1 LTR ERVL 0 414 376 450 0 0 0 chr12 97742916 97742966 -46043489 + (GA)n Simple_repeat Simple_repeat 1 50 0 2059 174 31 31 chr12 97742966 97743362 -46043093 - MLT2B1 LTR ERVL -38 376 1 669 210 0 0 chr12 97743436 97743555 -46042900 - MER45 DNA AcHobo -2 1579 1461 1072 174 24 73 chr12 97743555 97743775 -46042680 - MER45B DNA AcHobo -198 842 613 184 42 0 0 chr12 97743775 97743799 -46042656 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2267 95 3 0 chr12 97743799 97744085 -46042370 - AluSx SINE Alu -1 310 1 1072 174 24 73 chr12 97744085 97744109 -46042346 - MER45B DNA AcHobo -425 615 608 1250 179 123 24 chr12 97744137 97744389 -46042066 - MER45B DNA AcHobo -722 318 42 2225 126 0 0 chr12 97744702 97745011 -46041444 - AluSx SINE Alu -3 309 1 530 292 72 23 chr12 97745217 97745466 -46040989 - L1ME1 LINE L1 -220 5946 5648 1647 164 58 14 chr12 97745466 97745643 -46040812 - AluJo SINE Alu -7 305 108 255 61 0 0 chr12 97745643 97745676 -46040779 + (TG)n Simple_repeat Simple_repeat 2 34 0 1647 164 58 14 chr12 97745676 97745790 -46040665 - AluJo SINE Alu -204 108 1 530 292 72 23 chr12 97745790 97745972 -46040483 - L1ME1 LINE L1 -518 5648 5476 1504 254 53 33 chr12 97746207 97746663 -46039792 + MER74B LTR ERVL 75 539 -83 1832 130 13 46 chr12 97746663 97746970 -46039485 - AluJb SINE Alu -15 297 1 300 218 141 64 chr12 97746970 97746997 -46039458 - MER88 LTR ERVL -361 103 79 410 248 113 7 chr12 97747740 97747881 -46038574 + MIR SINE MIR 95 250 -12 545 232 12 79 chr12 97748846 97748886 -46037569 + MER5A DNA MER1_type 37 78 -111 2103 141 3 0 chr12 97748886 97749190 -46037265 + AluSq SINE Alu 1 305 -8 545 232 12 79 chr12 97749190 97749313 -46037142 + MER5A DNA MER1_type 78 189 0 2914 179 22 33 chr12 97749546 97750098 -46036357 + MLT2B3 LTR ERVL 1 546 -8 202 361 0 0 chr12 97750150 97750211 -46036244 - L2 LINE L2 -2 3270 3210 1504 234 130 49 chr12 97750390 97750600 -46035855 + MLT1H1 LTR MaLR 1 193 -362 2431 111 39 30 chr12 97750600 97750961 -46035494 - THE1B LTR MaLR 0 364 1 1504 234 130 49 chr12 97750961 97751258 -46035197 + MLT1H1 LTR MaLR 193 549 -6 398 308 111 19 chr12 97751480 97751688 -46034767 + MIR SINE MIR 1 227 -35 319 331 80 20 chr12 97751702 97751853 -46034602 + LTR33A LTR ERVL 2 161 -362 345 279 59 15 chr12 97752192 97752328 -46034127 - L1MEd LINE L1 -5969 150 9 2302 194 0 3 chr12 97752430 97752796 -46033659 + MLT1A1 LTR MaLR 1 365 0 360 256 115 59 chr12 97752889 97753071 -46033384 - MER20B DNA MER1_type -21 198 2 2165 117 0 28 chr12 97753429 97753746 -46032709 + AluSx SINE Alu 1 308 -4 264 253 131 20 chr12 97753800 97753899 -46032556 + MIR3 SINE MIR 97 206 -2 197 273 0 68 chr12 97753895 97753983 -46032472 - MIR SINE MIR -15 247 166 * 293 267 0 44 chr12 97754341 97754431 -46032024 + MIR SINE MIR 7 92 -170 187 324 70 14 chr12 97754457 97754528 -46031927 + MIR SINE MIR 183 257 -5 706 262 52 70 chr12 97754681 97754967 -46031488 - L2 LINE L2 0 3313 3033 758 306 115 8 chr12 97754993 97755392 -46031063 - L2 LINE L2 -703 2611 2170 210 103 0 0 chr12 97755699 97755728 -46030727 - L2 LINE L2 -14 3258 3230 2570 119 63 5 chr12 97755891 97756285 -46030170 - MSTA LTR MaLR -11 417 1 740 139 157 0 chr12 97756616 97756731 -46029724 + FLAM_C SINE Alu 1 133 0 2476 95 0 0 chr12 97756882 97757187 -46029268 + AluSq SINE Alu 1 305 -8 2001 123 0 39 chr12 97758261 97758598 -46027857 - AluSx SINE Alu 0 312 3 461 288 78 44 chr12 97758664 97758935 -46027520 + L2 LINE L2 3023 3302 -11 21 0 0 0 chr12 97758940 97758961 -46027494 + AT_rich Low_complexity Low_complexity 1 21 0 1185 178 57 140 chr12 97759552 97759637 -46026818 - L1MD3 LINE L1 -264 7731 7640 266 111 0 22 chr12 97759637 97759682 -46026773 + MADE1 DNA Mariner 37 80 0 1185 178 57 140 chr12 97759682 97759923 -46026532 - L1MD3 LINE L1 -355 7640 7392 479 291 27 9 chr12 97759934 97760154 -46026301 - L1M4 LINE L1 -3236 2910 2687 2410 100 22 51 chr12 97761069 97761384 -46025071 - MER46B DNA MER2_type -2496 235 56 1875 168 3 3 chr12 97761384 97761694 -46024761 - AluJb SINE Alu 0 312 3 2410 100 22 51 chr12 97761694 97761749 -46024706 - MER46B DNA MER2_type -2675 56 1 218 357 62 8 chr12 97762010 97762139 -46024316 + MIR SINE MIR 4 139 -123 715 214 70 12 chr12 97762153 97762334 -46024121 - Tigger3(Golem) DNA MER2_type -16 3013 1 340 301 54 38 chr12 97763297 97763483 -46022972 - L2 LINE L2 -108 3205 3017 2113 120 0 0 chr12 97765495 97765810 -46020645 - AluSx SINE Alu 0 315 1 2497 64 3 0 chr12 97767257 97767552 -46018903 - AluSp SINE Alu -17 296 1 24 67 0 0 chr12 97767927 97767972 -46018483 + AT_rich Low_complexity Low_complexity 1 45 0 214 260 0 0 chr12 97768233 97768283 -46018172 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 770 246 163 56 chr12 97770526 97770574 -46015881 - L2 LINE L2 0 3313 3272 2137 132 42 30 chr12 97770574 97770907 -46015548 - MER1B DNA MER1_type 0 337 1 770 246 163 56 chr12 97770907 97771215 -46015240 - L2 LINE L2 -41 3272 2919 527 221 78 15 chr12 97771346 97771607 -46014848 - MER113 DNA MER1_type? -34 487 126 2245 127 12 3 chr12 97771613 97771953 -46014502 + L1MA5 LINE L1 5958 6300 0 2308 85 0 3 chr12 97772078 97772372 -46014083 + AluSq SINE Alu 1 293 -20 2313 114 0 16 chr12 97772386 97772703 -46013752 + AluSx SINE Alu 1 312 0 22 0 0 0 chr12 97772745 97772767 -46013688 + AT_rich Low_complexity Low_complexity 1 22 0 557 276 88 33 chr12 97773007 97773188 -46013267 - MIR3 SINE MIR -2 206 16 469 268 12 36 chr12 97773734 97773902 -46012553 + MER5B DNA MER1_type 1 164 -14 180 239 0 22 chr12 97773911 97773957 -46012498 - MER5B DNA MER1_type -129 49 5 1900 145 27 3 chr12 97774588 97774885 -46011570 + AluSx SINE Alu 1 304 -8 692 223 22 43 chr12 97774929 97775113 -46011342 - MIR SINE MIR -3 259 80 254 169 292 0 chr12 97776247 97776312 -46010143 - MIR3 SINE MIR -6 202 119 961 218 44 15 chr12 97776933 97777139 -46009316 - MIR SINE MIR -39 223 12 341 183 51 10 chr12 97777536 97777609 -46008846 - LTR50 LTR ERVL 0 795 697 2561 77 0 0 chr12 97777609 97777922 -46008533 - AluSq SINE Alu 0 313 1 341 183 51 10 chr12 97777922 97777955 -46008500 - LTR50 LTR ERVL -98 697 667 4144 223 46 31 chr12 97778168 97778280 -46008175 + L1MA8 LINE L1 2218 2327 -5238 1200 69 7 0 chr12 97778280 97778425 -46008030 + L1PA10 LINE L1 6019 6164 -4 4144 223 46 31 chr12 97778425 97780169 -46006286 + L1MA8 LINE L1 2327 4108 -3457 11178 138 33 16 chr12 97780187 97781990 -46004465 + L1MA8 LINE L1 4893 6662 -1048 2003 111 27 20 chr12 97781990 97782287 -46004168 + AluSq SINE Alu 1 299 -14 11178 138 33 16 chr12 97782287 97783061 -46003394 + L1MA8 LINE L1 6662 7522 -188 1218 190 131 59 chr12 97783061 97783382 -46003073 - MER2 DNA MER2_type 0 344 1 11178 138 33 16 chr12 97783382 97783502 -46002953 + L1MA8 LINE L1 7522 7638 -72 1142 184 58 116 chr12 97783509 97783890 -46002565 + MLT1A1 LTR MaLR 1 359 -6 397 145 0 0 chr12 97783899 97783961 -46002494 + L1MA8 LINE L1 7643 7704 -6 891 244 60 57 chr12 97784042 97784443 -46002012 - MER39 LTR ERV1 0 707 306 243 226 89 65 chr12 97784463 97784587 -46001868 - LTR48B LTR ERV1 -517 127 1 1541 154 45 19 chr12 97785115 97785382 -46001073 + MER58B DNA MER1_type 68 341 0 2341 84 0 0 chr12 97786802 97787098 -45999357 - AluY SINE Alu -15 296 1 306 335 129 34 chr12 97787163 97787372 -45999083 + L2 LINE L2 2951 3179 -93 21 36 0 0 chr12 97787417 97787445 -45999010 + AT_rich Low_complexity Low_complexity 1 28 0 617 161 16 223 chr12 97787521 97787664 -45998791 - MLT1J LTR MaLR 0 511 465 333 0 0 0 chr12 97787664 97787701 -45998754 + (CA)n Simple_repeat Simple_repeat 2 38 0 617 161 16 223 chr12 97787701 97787867 -45998588 - MLT1J LTR MaLR -46 465 266 1964 156 0 13 chr12 97789716 97790030 -45996425 - AluJb SINE Alu -2 310 1 928 186 38 23 chr12 97790032 97790294 -45996161 - L1MD3 LINE L1 0 7995 6098 969 134 0 7 chr12 97790347 97790489 -45995966 - FLAM_C SINE Alu -2 141 1 335 326 38 54 chr12 97790566 97790750 -45995705 + MIR3 SINE MIR 13 193 -15 * 738 295 135 56 chr12 97790712 97791590 -45994865 + L2 LINE L2 2348 3313 0 22 70 0 0 chr12 97791626 97791669 -45994786 + AT_rich Low_complexity Low_complexity 1 43 0 1015 231 145 78 chr12 97793630 97794133 -45992322 - MLT1H1 LTR MaLR -10 545 9 231 242 263 0 chr12 97794480 97794579 -45991876 - L2 LINE L2 -15 3257 3133 647 259 161 13 chr12 97794699 97794993 -45991462 + L2 LINE L2 2742 3066 -247 461 222 37 9 chr12 97795017 97795125 -45991330 + L2 LINE L2 3203 3313 0 1576 159 12 0 chr12 97795160 97795405 -45991050 - MLT1A1 LTR MaLR -9 356 109 4426 101 10 3 chr12 97795624 97796221 -45990234 - L1PA14 LINE L1 0 6161 5561 826 231 81 112 chr12 97796389 97796702 -45989753 - MLT1H LTR MaLR -35 514 218 2402 100 3 0 chr12 97796702 97797013 -45989442 - AluSx SINE Alu 0 312 1 826 231 81 112 chr12 97797013 97797144 -45989311 - MLT1H LTR MaLR -331 218 84 775 280 77 58 chr12 97797710 97798120 -45988335 + L2 LINE L2 2632 3062 -251 2247 117 0 0 chr12 97798125 97798424 -45988031 - AluSx SINE Alu -13 299 1 340 261 82 37 chr12 97798494 97798628 -45987827 + MIR SINE MIR 105 244 -18 252 340 60 45 chr12 97798633 97798833 -45987622 + L2 LINE L2 3111 3313 0 254 429 58 9 chr12 97798974 97799198 -45987257 + L3 LINE CR1 65 299 -1278 302 310 71 35 chr12 97799232 97799345 -45987110 - MIR3 SINE MIR -77 131 15 1124 165 69 34 chr12 97799677 97799770 -45986685 + MER33 DNA MER1_type 2 90 -2495 1444 210 65 9 chr12 97799770 97800094 -45986361 + MER2 DNA MER2_type 2 343 -1 1124 165 69 34 chr12 97800094 97800291 -45986164 + MER33 DNA MER1_type 90 302 -22 703 286 180 6 chr12 97800316 97800655 -45985800 + L3 LINE CR1 1179 1576 -1 492 248 189 57 chr12 97800850 97801221 -45985234 - MLT1L LTR MaLR 0 615 196 256 211 35 0 chr12 97801188 97801245 -45985210 - MLT1J2 LTR MaLR -322 128 70 * 22 0 0 0 chr12 97801424 97801446 -45985009 + AT_rich Low_complexity Low_complexity 1 22 0 187 292 0 0 chr12 97801506 97801554 -45984901 - MIR SINE MIR -56 152 105 636 138 0 0 chr12 97801897 97801984 -45984471 + FLAM SINE Alu 38 124 -19 24 32 0 0 chr12 97801984 97802015 -45984440 + AT_rich Low_complexity Low_complexity 1 31 0 2137 112 34 0 chr12 97802228 97802523 -45983932 + AluSx SINE Alu 1 305 -7 11753 183 69 44 chr12 97802568 97803897 -45982558 - L1MC1 LINE L1 0 6613 5319 1984 132 17 10 chr12 97803897 97804185 -45982270 - AluSx SINE Alu -18 294 5 11753 183 69 44 chr12 97804185 97805124 -45981331 - L1MC1 LINE L1 -1294 5319 4405 1942 171 0 0 chr12 97805124 97805428 -45981027 - AluJo SINE Alu -8 304 1 11753 183 69 44 chr12 97805428 97807471 -45978984 - L1MC1 LINE L1 -2208 4405 2414 787 177 0 16 chr12 97807471 97807595 -45978860 - FLAM_C SINE Alu -17 126 5 11753 183 69 44 chr12 97807595 97807846 -45978609 - L1MC1 LINE L1 -4199 2414 2171 1987 156 39 18 chr12 97807846 97808179 -45978276 - MER2 DNA MER2_type -4 340 1 11753 183 69 44 chr12 97808179 97809341 -45977114 - L1MC1 LINE L1 -4442 2171 1039 2948 193 12 93 chr12 97809341 97810093 -45976362 + LTR8 LTR ERV1 1 691 0 11753 183 69 44 chr12 97810093 97810462 -45975993 - L1MC1 LINE L1 -5574 1039 681 2114 119 3 13 chr12 97810462 97810765 -45975690 + AluJb SINE Alu 1 300 -12 11753 183 69 44 chr12 97810765 97810985 -45975470 - L1MC1 LINE L1 -5932 681 5 2442 50 0 0 chr12 97811210 97811528 -45974927 - AluY SINE Alu 0 318 1 500 264 127 24 chr12 97812161 97812373 -45974082 - MIR SINE MIR -16 246 13 2220 126 3 0 chr12 97812463 97812772 -45973683 - AluSq SINE Alu -3 310 1 417 257 131 65 chr12 97814261 97814506 -45971949 + L2 LINE L2 3011 3271 -1 398 239 38 59 chr12 97814665 97814904 -45971551 + L1M4 LINE L1 4402 4635 -1511 753 256 92 4 chr12 97815037 97815264 -45971191 + L1ME LINE L1 3640 3886 -2260 816 231 11 24 chr12 97815325 97815598 -45970857 - MER46C DNA MER2_type 0 338 4 2266 97 7 0 chr12 97815873 97816172 -45970283 + AluSp SINE Alu 1 301 -12 348 304 41 10 chr12 97816196 97816390 -45970065 + L1ME LINE L1 5174 5373 -773 380 299 178 5 chr12 97816440 97816637 -45969818 - MIR SINE MIR -12 250 20 900 293 88 17 chr12 97816679 97817031 -45969424 + L1ME LINE L1 5404 5780 -341 2194 113 7 7 chr12 97817086 97817386 -45969069 - AluSx SINE Alu -12 300 1 2410 97 3 0 chr12 97818223 97818534 -45967921 + AluSp SINE Alu 1 312 -1 791 238 94 9 chr12 97818991 97819214 -45967241 + MIR SINE MIR 9 250 -12 506 338 64 5 chr12 97819311 97819515 -45966940 + MIR SINE MIR 47 262 0 209 224 0 35 chr12 97820082 97820106 -45966349 + (TCCA)n Simple_repeat Simple_repeat 2 25 -32 1738 164 13 3 chr12 97820106 97820404 -45966051 - AluJb SINE Alu -11 301 1 209 224 0 35 chr12 97820404 97820437 -45966018 + (TCCA)n Simple_repeat Simple_repeat 25 57 0 * 300 237 26 13 chr12 97820406 97820482 -45965973 + CT-rich Low_complexity Low_complexity 3 79 0 488 125 0 11 chr12 97820484 97820572 -45965883 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 335 169 92 0 chr12 97820572 97820637 -45965818 - L2 LINE L2 -52 3261 3191 198 369 0 14 chr12 97820640 97820781 -45965674 - MIR SINE MIR -46 216 78 355 314 46 102 chr12 97820865 97821524 -45964931 + L2 LINE L2 2642 3271 -1 270 336 88 36 chr12 97821781 97821918 -45964537 + L2 LINE L2 3127 3270 -2 843 189 0 0 chr12 97821985 97822117 -45964338 + FLAM_C SINE Alu 2 133 0 916 162 7 0 chr12 97822276 97822430 -45964025 + AluSg/x SINE Alu 134 288 -22 276 257 20 69 chr12 97823051 97823152 -45963303 + L3b LINE CR1 1266 1361 -222 220 320 70 40 chr12 97823638 97823738 -45962717 + L3b LINE CR1 1417 1519 -64 302 173 0 58 chr12 97825157 97825261 -45961194 + GA-rich Low_complexity Low_complexity 4 101 0 26 93 0 0 chr12 97825700 97825775 -45960680 + AT_rich Low_complexity Low_complexity 1 75 0 23 0 0 0 chr12 97826862 97826885 -45959570 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr12 97828745 97828802 -45957653 + GC_rich Low_complexity Low_complexity 1 57 0 1200 178 9 4 chr12 97829697 97829922 -45956533 - AluJb SINE Alu -9 303 78 22 0 0 0 chr12 97830210 97830232 -45956223 + AT_rich Low_complexity Low_complexity 1 22 0 1427 218 139 51 chr12 97830404 97830990 -45955465 - MLT1E2 LTR MaLR 0 626 1 2268 116 0 0 chr12 97832482 97832783 -45953672 - AluSx SINE Alu -11 301 1 371 194 106 62 chr12 97833467 97833627 -45952828 - L2 LINE L2 -188 3084 2918 484 265 142 11 chr12 97834057 97834325 -45952130 - HAL1b LINE L1 -3 1345 1043 280 275 33 11 chr12 97834737 97834828 -45951627 - HAL1b LINE L1 -739 609 517 52 58 0 0 chr12 97834842 97834929 -45951526 + AT_rich Low_complexity Low_complexity 1 87 0 287 289 39 23 chr12 97834930 97835058 -45951397 - HAL1b LINE L1 -861 487 358 2254 98 0 10 chr12 97835127 97835423 -45951032 - AluY SINE Alu -18 293 1 396 0 0 0 chr12 97835616 97835660 -45950795 + (TG)n Simple_repeat Simple_repeat 2 45 0 4735 124 38 0 chr12 97835732 97835762 -45950693 + L1MB3 LINE L1 5445 5472 -711 225 0 0 0 chr12 97835762 97835787 -45950668 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4735 124 38 0 chr12 97835787 97836466 -45949989 + L1MB3 LINE L1 5472 6181 -2 828 188 0 0 chr12 97836671 97836799 -45949656 - FLAM_C SINE Alu -14 129 2 2021 129 0 14 chr12 97838220 97838551 -45947904 + AluSx SINE Alu 1 312 0 1979 115 0 34 chr12 97838562 97838888 -45947567 + AluSx SINE Alu 1 316 0 719 148 33 71 chr12 97838905 97839087 -45947368 + Charlie5 DNA MER1_type 2410 2584 -28 261 246 0 16 chr12 97839338 97839399 -45947056 + MIR3 SINE MIR 115 174 -34 2360 231 130 13 chr12 97839439 97840140 -45946315 - MER20B DNA MER1_type 0 784 2 237 141 62 78 chr12 97840384 97840448 -45946007 - MIR SINE MIR -124 84 22 820 91 0 18 chr12 97842560 97842670 -45943785 - AluSq/x SINE Alu -180 133 26 1780 142 93 100 chr12 97842756 97843304 -45943151 - L1MC2 LINE L1 -184 6160 5617 2206 115 3 6 chr12 97845418 97845732 -45940723 + AluSp SINE Alu 1 313 0 25 65 0 0 chr12 97845990 97846036 -45940419 + AT_rich Low_complexity Low_complexity 1 46 0 2164 109 3 26 chr12 97846259 97846570 -45939885 + AluSg SINE Alu 1 304 -6 279 209 116 0 chr12 97846939 97847025 -45939430 + MER46C DNA MER2_type 18 113 -225 1060 181 53 45 chr12 97847030 97847296 -45939159 + MER46C DNA MER2_type 71 338 0 262 29 0 0 chr12 97847598 97847632 -45938823 - L1M2 LINE L1 -711 5580 5547 252 0 0 0 chr12 97847764 97847792 -45938663 + (TG)n Simple_repeat Simple_repeat 2 29 0 1265 55 0 18 chr12 97848227 97848391 -45938064 - L1PA3 LINE L1 0 6155 5995 569 247 0 0 chr12 97848924 97849074 -45937381 - L1MA10 LINE L1 -3 6331 6182 191 287 168 20 chr12 97849916 97850017 -45936438 - MIR SINE MIR -74 134 19 2127 119 74 8 chr12 97850252 97850604 -45935851 + THE1C LTR MaLR 1 375 0 206 269 19 0 chr12 97850861 97850913 -45935542 + L2 LINE L2 3261 3313 0 24 0 0 0 chr12 97851369 97851393 -45935062 + AT_rich Low_complexity Low_complexity 1 24 0 648 283 20 75 chr12 97851393 97851686 -45934769 + MARNA DNA Mariner 207 483 -103 262 211 70 56 chr12 97851764 97851835 -45934620 + L2 LINE L2 3186 3257 -15 405 321 31 25 chr12 97852290 97852452 -45934003 - MIR SINE MIR -77 185 23 191 240 210 0 chr12 97852830 97852930 -45933525 - MIR3 SINE MIR -75 133 13 759 254 129 35 chr12 97854204 97854436 -45932019 + MIR SINE MIR 9 262 0 29 28 0 0 chr12 97855269 97855305 -45931150 + AT_rich Low_complexity Low_complexity 1 36 0 193 250 0 21 chr12 97855382 97855430 -45931025 + MIR SINE MIR 92 138 -124 387 0 0 0 chr12 97855430 97855473 -45930982 + (TAA)n Simple_repeat Simple_repeat 2 44 0 469 255 73 44 chr12 97855707 97856091 -45930364 - L1MC5 LINE L1 -54 7907 7513 636 98 22 0 chr12 97856091 97856183 -45930272 - AluY SINE Alu -11 300 207 5157 29 8 0 chr12 97856200 97856815 -45929640 - L1PA4 LINE L1 -2 6153 5534 511 223 11 112 chr12 97856818 97857078 -45929377 - L1MC5 LINE L1 -473 7488 7255 393 218 138 125 chr12 97857195 97857600 -45928855 - L1MC5 LINE L1 -728 7233 6837 2033 118 0 57 chr12 97857646 97857960 -45928495 + AluSx SINE Alu 1 296 -16 559 269 21 28 chr12 97858165 97858310 -45928145 + MIR SINE MIR 20 163 -99 2235 95 10 3 chr12 97858813 97859109 -45927346 + AluSx SINE Alu 1 298 -14 208 264 0 0 chr12 97859160 97859213 -45927242 + T-rich Low_complexity Low_complexity 1 53 0 2149 169 99 8 chr12 97861637 97862122 -45924333 - L1MB8 LINE L1 0 6178 5650 363 272 19 0 chr12 97862204 97862307 -45924148 + L1MC4a LINE L1 5511 5615 -2193 394 313 105 24 chr12 97862311 97862605 -45923850 + L1MC4a LINE L1 5592 5909 -1899 21 36 0 0 chr12 97862780 97862808 -45923647 + AT_rich Low_complexity Low_complexity 1 28 0 214 247 32 65 chr12 97863017 97863110 -45923345 + MIR SINE MIR 2 91 -171 203 381 0 10 chr12 97863878 97863975 -45922480 + L2 LINE L2 3177 3272 0 543 308 6 6 chr12 97864246 97864402 -45922053 + MIR3 SINE MIR 50 205 -3 675 277 145 51 chr12 97864484 97864565 -45921890 + MLT1J2 LTR MaLR 14 86 -364 1839 127 3 59 chr12 97864565 97864888 -45921567 + AluJb SINE Alu 1 305 -7 675 277 145 51 chr12 97864888 97865137 -45921318 + MLT1J2 LTR MaLR 86 389 -61 1945 137 92 9 chr12 97865137 97865473 -45920982 - THE1B LTR MaLR 0 364 1 675 277 145 51 chr12 97865473 97865535 -45920920 + MLT1J2 LTR MaLR 389 444 -6 643 265 33 17 chr12 97865552 97865733 -45920722 - MIR SINE MIR -59 203 20 318 370 115 5 chr12 97866755 97866955 -45919500 - MIR SINE MIR -21 241 20 372 246 177 6 chr12 97867214 97867389 -45919066 + L1ME LINE L1 5267 5471 -2337 251 278 83 49 chr12 97867466 97867671 -45918784 + L1ME LINE L1 5623 5834 -287 2231 234 60 79 chr12 97867700 97868305 -45918150 + L1ME3A LINE L1 4482 5097 -1073 2637 20 0 7 chr12 97868305 97868605 -45917850 + AluY SINE Alu 1 298 -13 2231 234 60 79 chr12 97868605 97869318 -45917137 + L1ME3A LINE L1 5097 5760 -410 1842 157 7 16 chr12 97869318 97869623 -45916832 + AluJb SINE Alu 1 302 -10 2231 234 60 79 chr12 97869623 97870022 -45916433 + L1ME3A LINE L1 5760 6165 -5 709 261 50 15 chr12 97871025 97871224 -45915231 + MIR SINE MIR 51 256 -6 392 274 71 0 chr12 97871802 97871915 -45914540 - L2 LINE L2 -1 3312 3192 615 261 144 54 chr12 97874249 97874602 -45911853 + L2 LINE L2 2422 2806 -508 222 314 74 46 chr12 97875510 97875685 -45910770 + MIR SINE MIR 62 241 -21 472 227 161 79 chr12 97877127 97877480 -45908975 + L2 LINE L2 2368 2749 -565 520 224 175 7 chr12 97877491 97877634 -45908821 - MER5B DNA MER1_type -11 167 1 270 0 0 0 chr12 97877992 97878022 -45908433 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr12 97879844 97879866 -45906589 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr12 97880120 97880165 -45906290 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr12 97880188 97880228 -45906227 + AT_rich Low_complexity Low_complexity 1 40 0 561 316 28 5 chr12 97880701 97880919 -45905536 + L2 LINE L2 2511 2733 -581 457 219 0 0 chr12 97882050 97882132 -45904323 - L2 LINE L2 -1 3312 3231 377 303 38 52 chr12 97882401 97882612 -45903843 - L2 LINE L2 -3 3310 3103 2538 120 3 11 chr12 97883428 97883795 -45902660 + THE1B LTR MaLR 1 364 0 10478 101 39 18 chr12 97883795 97885343 -45901112 + THE1B-int LTR MaLR 1 1580 0 2327 121 3 24 chr12 97885343 97885578 -45900877 + THE1B LTR MaLR 1 227 -137 2441 123 28 14 chr12 97885578 97885937 -45900518 + THE1B LTR MaLR 1 364 0 2327 121 3 24 chr12 97885937 97886073 -45900382 + THE1B LTR MaLR 227 364 0 2063 131 7 0 chr12 97886823 97887121 -45899334 - AluSx SINE Alu -12 300 1 420 200 148 148 chr12 97887957 97888418 -45898037 - LTR37B LTR ERV1 0 468 8 311 220 0 0 chr12 97888726 97888785 -45897670 - L2 LINE L2 0 3272 3214 523 310 197 2 chr12 97889250 97889686 -45896769 + L2 LINE L2 2713 3263 -9 2021 105 4 7 chr12 97890097 97890374 -45896081 + AluSp SINE Alu 1 276 -37 439 143 31 118 chr12 97890474 97890635 -45895820 + L1MA7 LINE L1 6143 6289 -2 180 0 0 0 chr12 97890702 97890722 -45895733 + (T)n Simple_repeat Simple_repeat 1 20 0 796 175 165 19 chr12 97891456 97891662 -45894793 - MIR SINE MIR -26 236 1 345 201 63 75 chr12 97892450 97892609 -45893846 + L1MC5 LINE L1 7751 7907 -54 1974 277 164 20 chr12 97892625 97894026 -45892429 + L2 LINE L2 1699 3312 -1 2051 119 17 0 chr12 97895129 97895423 -45891032 + AluSq SINE Alu 1 299 -14 685 226 54 54 chr12 97897219 97897440 -45889015 - MIR SINE MIR -34 228 8 215 250 42 0 chr12 97897820 97897868 -45888587 + G-rich Low_complexity Low_complexity 1 50 0 227 102 102 41 chr12 97898795 97898844 -45887611 - MLT2A2 LTR ERVL 0 453 402 2173 169 74 54 chr12 97898871 97899208 -45887247 - MLT2B2 LTR ERVL -20 495 143 1657 115 144 38 chr12 97899208 97899388 -45887067 + THE1C LTR MaLR 1 160 -215 180 0 0 0 chr12 97899388 97899408 -45887047 + (TC)n Simple_repeat Simple_repeat 2 21 0 1657 115 144 38 chr12 97899408 97899566 -45886889 + THE1C LTR MaLR 160 375 0 2173 169 74 54 chr12 97899566 97899713 -45886742 - MLT2B2 LTR ERVL -372 143 1 556 247 70 63 chr12 97899742 97900010 -45886445 - L1MC5 LINE L1 -393 7415 7241 452 239 68 13 chr12 97900004 97900185 -45886270 - L1MC5 LINE L1 -747 7214 7071 * 2284 120 0 0 chr12 97900196 97900505 -45885950 - AluSx SINE Alu -3 309 1 4799 86 19 1 chr12 97900516 97901183 -45885272 - L1PB2 LINE L1 -4 6147 5469 1043 239 82 37 chr12 97901929 97902284 -45884171 + MLT1J1 LTR MaLR 18 388 -58 1383 204 53 22 chr12 97902499 97902939 -45883516 + MLT1D LTR MaLR 1 505 0 234 81 0 0 chr12 97904384 97904421 -45882034 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 2430 87 3 3 chr12 97904980 97905289 -45881166 + AluSg SINE Alu 1 309 -1 377 185 65 19 chr12 97905396 97905504 -45880951 - Charlie2a DNA MER1_type 0 2862 2750 835 268 61 4 chr12 97905504 97905750 -45880705 - Charlie2a DNA MER1_type -1863 999 740 509 223 211 0 chr12 97905873 97906048 -45880407 - Charlie2a DNA MER1_type -2524 258 47 363 337 117 15 chr12 97906312 97906576 -45879879 - L2 LINE L2 -15 3298 3008 675 237 69 102 chr12 97906608 97906971 -45879484 - L2 LINE L2 -6 3307 2957 2132 108 84 6 chr12 97906995 97907327 -45879128 - THE1B LTR MaLR -6 358 1 2128 133 3 0 chr12 97907719 97908020 -45878435 - AluSq SINE Alu -11 302 1 462 279 28 34 chr12 97908187 97908366 -45878089 + MIR3 SINE MIR 21 198 -10 2582 70 0 6 chr12 97909073 97909388 -45877067 + AluSp SINE Alu 1 313 0 351 361 27 11 chr12 97910303 97910486 -45875969 + MIR SINE MIR 2 187 -75 3158 124 42 85 chr12 97910490 97911137 -45875318 + L1MC2 LINE L1 5542 6160 -184 824 91 0 18 chr12 97911223 97911333 -45875122 + AluSq/x SINE Alu 26 133 -180 216 141 62 78 chr12 97913446 97913510 -45872945 + MIR SINE MIR 22 84 -124 1720 235 79 13 chr12 97913754 97914455 -45872000 + MER20B DNA MER1_type 2 783 0 241 208 0 19 chr12 97914503 97914556 -45871899 - MIR3 SINE MIR -42 166 115 1362 144 17 122 chr12 97914807 97915006 -45871449 - MER33 DNA MER1_type -2262 323 176 2046 115 0 34 chr12 97915006 97915332 -45871123 - AluSx SINE Alu 0 316 1 1362 144 17 122 chr12 97915332 97915492 -45870963 - MER33 DNA MER1_type -2409 176 1 470 252 59 0 chr12 97916170 97916305 -45870150 - MIR SINE MIR -36 226 84 517 256 21 109 chr12 97918247 97918485 -45867970 + MIR SINE MIR 9 225 -37 434 326 106 31 chr12 97918693 97919079 -45867376 + L2 LINE L2 2245 2659 -655 1878 80 0 32 chr12 97919128 97919377 -45867078 + AluY SINE Alu 64 304 -7 216 359 0 26 chr12 97919509 97919587 -45866868 + L2 LINE L2 2656 2731 -583 321 282 75 69 chr12 97919761 97919809 -45866646 - MIR3 SINE MIR -10 198 152 829 290 45 18 chr12 97919809 97920140 -45866315 + MER102b DNA MER1_type 1 340 -1 321 282 75 69 chr12 97920140 97920279 -45866176 - MIR3 SINE MIR -56 152 10 2262 112 0 0 chr12 97920641 97920935 -45865520 + AluSx SINE Alu 1 294 -18 2250 109 10 0 chr12 97921818 97922122 -45864333 + AluSq SINE Alu 1 307 -6 339 65 0 0 chr12 97923202 97923248 -45863207 + (CA)n Simple_repeat Simple_repeat 2 47 0 1861 86 8 0 chr12 97923825 97924081 -45862374 + L1PA4 LINE L1 5896 6153 -2 611 128 21 0 chr12 97924098 97924192 -45862263 + AluY SINE Alu 207 302 -9 560 261 73 47 chr12 97924192 97924575 -45861880 + L1MC5 LINE L1 7515 7907 -54 387 0 0 0 chr12 97924809 97924852 -45861603 + (TTA)n Simple_repeat Simple_repeat 2 44 0 29 28 0 0 chr12 97924977 97925013 -45861442 + AT_rich Low_complexity Low_complexity 1 36 0 1595 167 0 60 chr12 97925359 97925676 -45860779 + AluJb SINE Alu 1 298 -14 264 149 0 0 chr12 97925889 97925936 -45860519 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 195 42 0 0 chr12 97926193 97926217 -45860238 + (A)n Simple_repeat Simple_repeat 1 24 0 2032 124 11 0 chr12 97926562 97926845 -45859610 + AluSx SINE Alu 4 289 -23 340 45 0 0 chr12 97926847 97926891 -45859564 + MER4E LTR ERV1 731 774 -5 414 240 56 40 chr12 97927027 97927179 -45859276 - MIR SINE MIR -62 146 3 229 229 60 24 chr12 97927355 97927438 -45859017 - MIR SINE MIR -70 192 107 805 144 53 37 chr12 97927583 97927770 -45858685 - MER96B DNA MER1_type? -227 190 1 2210 112 20 0 chr12 97928975 97929271 -45857184 + AluSx SINE Alu 1 302 -10 263 302 62 0 chr12 97929324 97929453 -45857002 - MIR SINE MIR -47 215 79 1098 128 30 98 chr12 97929525 97929760 -45856695 + MER20 DNA MER1_type 1 219 0 1875 163 7 0 chr12 97931071 97931359 -45855096 + AluJo SINE Alu 2 291 -21 423 124 67 11 chr12 97931479 97931568 -45854887 - MER53 DNA DNA 0 189 96 * 511 123 271 0 chr12 97931494 97931616 -45854839 + MER53 DNA DNA 25 179 -10 216 357 0 29 chr12 97931718 97931858 -45854597 + GA-rich Low_complexity Low_complexity 6 141 0 1504 193 166 25 chr12 97932067 97932242 -45854213 + LTR54B LTR ERV1 1 150 -348 2246 180 82 63 chr12 97932242 97932843 -45853612 - LTR9 LTR ERV1 0 612 1 1504 193 166 25 chr12 97932843 97933102 -45853353 + LTR54B LTR ERV1 150 496 -2 750 104 5 183 chr12 97933567 97933769 -45852686 + LTR39 LTR ERV1 2 167 -616 2252 90 21 0 chr12 97933769 97934057 -45852398 + AluSx SINE Alu 1 294 -18 2293 102 10 0 chr12 97934940 97935244 -45851211 + AluSq SINE Alu 1 307 -6 339 65 0 0 chr12 97936323 97936369 -45850086 + (CA)n Simple_repeat Simple_repeat 2 47 0 424 306 41 12 chr12 97937217 97937387 -45849068 + MIR SINE MIR 20 194 -68 512 150 0 0 chr12 97938764 97938844 -45847611 - MER116 DNA Mariner 0 80 1 2636 240 38 13 chr12 97938989 97939677 -45846778 - L1ME1 LINE L1 -5 6161 5457 1538 89 136 39 chr12 97939672 97939930 -45846525 - L1MB1 LINE L1 -1 6167 5885 * 2980 199 41 51 chr12 97939933 97940816 -45845639 - L1ME1 LINE L1 -703 5463 4592 484 264 93 0 chr12 97941411 97941551 -45844904 - Charlie8 DNA MER1_type -2264 153 1 1991 119 7 3 chr12 97941613 97941918 -45844537 - AluSx SINE Alu 0 312 2 298 315 9 19 chr12 97942139 97942247 -45844208 - L2 LINE L2 -186 3086 2980 271 179 89 0 chr12 97942253 97942309 -45844146 - MER112 DNA MER1_type 0 260 200 207 297 47 0 chr12 97942677 97942741 -45843714 + MIR3 SINE MIR 93 159 -49 298 241 25 13 chr12 97942815 97942894 -45843561 + L2 LINE L2 3230 3309 -4 2022 145 7 0 chr12 97943003 97943306 -45843149 + 7SLRNA srpRNA srpRNA 1 305 -15 27 29 0 0 chr12 97943308 97943342 -45843113 + AT_rich Low_complexity Low_complexity 1 34 0 247 318 91 0 chr12 97943554 97943642 -45842813 - L2 LINE L2 -32 3240 3145 419 347 67 30 chr12 97943774 97944180 -45842275 - L3 LINE CR1 -518 1059 639 294 160 0 0 chr12 97944970 97945020 -45841435 + ORSL DNA AcHobo 1 50 -225 668 259 74 69 chr12 97945051 97945262 -45841193 - HAL1b LINE L1 -8 1340 1125 1586 172 27 27 chr12 97945262 97945559 -45840896 - AluJb SINE Alu -7 305 9 668 259 74 69 chr12 97945559 97945725 -45840730 - HAL1b LINE L1 -223 1125 961 569 285 73 63 chr12 97945773 97946170 -45840285 + MLT1I LTR MaLR 1 401 -8 433 269 38 25 chr12 97946178 97946338 -45840117 - HAL1b LINE L1 -435 913 752 341 270 68 7 chr12 97946346 97946420 -45840035 - HAL1b LINE L1 -531 817 749 2268 108 3 0 chr12 97946420 97946716 -45839739 - AluSp SINE Alu -16 297 1 341 270 68 7 chr12 97946716 97946789 -45839666 - HAL1b LINE L1 -599 749 661 894 199 23 6 chr12 97946835 97947011 -45839444 - MER97a DNA MER1_type? -715 179 1 867 274 100 42 chr12 97947018 97947569 -45838886 - HAL1b LINE L1 -691 657 75 703 254 161 78 chr12 97948665 97949074 -45837381 - L2 LINE L2 0 3313 2871 243 0 0 0 chr12 97949176 97949203 -45837252 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2154 102 7 0 chr12 97949206 97949490 -45836965 - AluSx SINE Alu -20 292 7 461 331 50 19 chr12 97949700 97949860 -45836595 - MIR3 SINE MIR -37 171 7 204 40 0 0 chr12 97950143 97950168 -45836287 + (T)n Simple_repeat Simple_repeat 1 25 0 195 26 103 0 chr12 97950310 97950349 -45836106 + (CACTC)n Simple_repeat Simple_repeat 3 45 0 273 146 0 0 chr12 97950425 97950473 -45835982 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 1698 151 0 60 chr12 97950685 97951002 -45835453 - AluJb SINE Alu -14 298 1 262 286 153 30 chr12 97951419 97951720 -45834735 - L1MC/D LINE L1 -582 5584 5279 234 264 90 52 chr12 97951861 97952073 -45834382 - L1MC/D LINE L1 -1049 5097 4878 620 276 87 105 chr12 97952103 97952485 -45833970 - L1MC/D LINE L1 -1591 4555 4167 2118 81 4 4 chr12 97952485 97952758 -45833697 - AluSp SINE Alu -3 310 38 620 276 87 105 chr12 97952758 97953516 -45832939 - L1MC/D LINE L1 -1979 4167 3436 226 310 35 0 chr12 97955210 97955297 -45831158 + MER113 DNA MER1_type? 7 96 -425 2146 118 10 0 chr12 97955307 97955611 -45830844 - AluSx SINE Alu -5 307 1 2021 129 0 14 chr12 97955622 97955953 -45830502 - AluSx SINE Alu 0 312 1 828 188 0 0 chr12 97957374 97957502 -45828953 + FLAM_C SINE Alu 2 129 -14 4735 124 38 0 chr12 97957707 97958386 -45828069 - L1MB3 LINE L1 -2 6181 5472 225 0 0 0 chr12 97958386 97958411 -45828044 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4735 124 38 0 chr12 97958411 97958441 -45828014 - L1MB3 LINE L1 -711 5472 5445 396 0 0 0 chr12 97958513 97958557 -45827898 + (CA)n Simple_repeat Simple_repeat 2 45 0 2254 98 0 10 chr12 97958750 97959046 -45827409 + AluY SINE Alu 1 293 -18 287 289 39 23 chr12 97959115 97959243 -45827212 + HAL1b LINE L1 358 487 -861 52 58 0 0 chr12 97959244 97959331 -45827124 + AT_rich Low_complexity Low_complexity 1 87 0 280 275 33 11 chr12 97959345 97959436 -45827019 + HAL1b LINE L1 517 609 -739 484 265 142 11 chr12 97959848 97960116 -45826339 + HAL1b LINE L1 1043 1345 -3 371 194 106 62 chr12 97960546 97960706 -45825749 + L2 LINE L2 2918 3084 -188 2268 116 0 0 chr12 97961390 97961691 -45824764 + AluSx SINE Alu 1 301 -11 216 111 0 0 chr12 97962504 97962540 -45823915 + (TA)n Simple_repeat Simple_repeat 2 37 0 650 253 50 15 chr12 97963304 97963506 -45822949 + MIR SINE MIR 52 260 -2 261 0 0 0 chr12 97964768 97964797 -45821658 + (TG)n Simple_repeat Simple_repeat 1 29 0 232 200 200 22 chr12 97964866 97964956 -45821499 - L1ME4a LINE L1 -22 6099 5994 307 309 53 20 chr12 97965766 97965918 -45820537 - L1ME4a LINE L1 -297 5824 5668 572 229 95 119 chr12 97965983 97966445 -45820010 - MLT1H LTR MaLR -4 545 95 233 180 0 66 chr12 97966730 97966791 -45819664 - L1ME4a LINE L1 -466 5655 5599 24 53 0 0 chr12 97966804 97966842 -45819613 + AT_rich Low_complexity Low_complexity 1 38 0 2018 125 7 3 chr12 97966847 97967134 -45819321 + AluSx SINE Alu 5 292 -20 272 374 22 14 chr12 97967279 97967418 -45819037 - L2 LINE L2 0 3272 3133 581 215 42 7 chr12 97967553 97967697 -45818758 + MIR SINE MIR 80 228 -34 2245 85 34 0 chr12 97967744 97968037 -45818418 - AluSc SINE Alu -6 303 1 318 301 68 73 chr12 97968243 97968462 -45817993 - L2 LINE L2 -3 3269 3052 984 169 90 15 chr12 97969493 97969694 -45816761 - MSTB1 LTR MaLR 0 432 217 343 157 29 14 chr12 97970131 97970201 -45816254 - MER92C LTR ERV1 0 554 484 424 267 38 13 chr12 97970259 97970424 -45816031 - MER92B LTR ERV1 -386 168 1 2995 127 153 9 chr12 97970460 97970988 -45815467 + MER39 LTR ERV1 1 604 -103 617 165 17 9 chr12 97971191 97971306 -45815149 + MER39 LTR ERV1 588 703 -4 490 127 0 0 chr12 97971412 97971483 -45814972 - MER92C LTR ERV1 0 554 484 360 254 11 99 chr12 97971535 97971647 -45814808 - MER92C LTR ERV1 -387 167 75 1576 178 13 35 chr12 97971647 97971961 -45814494 - AluJb SINE Alu -5 307 1 360 254 11 99 chr12 97971961 97972029 -45814426 - MER92C LTR ERV1 -479 75 3 979 298 97 28 chr12 97972316 97972624 -45813831 - L2 LINE L2 -4 3268 2983 1601 211 38 16 chr12 97972624 97972989 -45813466 + MER93b LTR ERV1 1 373 0 979 298 97 28 chr12 97972989 97973329 -45813126 - L2 LINE L2 -289 2983 2558 1199 259 134 3 chr12 97973334 97973708 -45812747 + LTR16A LTR ERVL 23 445 -5 237 108 0 0 chr12 97973714 97973751 -45812704 - L2 LINE L2 -748 2566 2530 1792 147 30 7 chr12 97973782 97974081 -45812374 + THE1B LTR MaLR 1 306 -58 341 188 82 0 chr12 97974619 97974704 -45811751 + MER103 DNA DNA 73 164 -2 432 0 0 0 chr12 97975528 97975576 -45810879 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 89 0 0 chr12 97975768 97975824 -45810631 + AT_rich Low_complexity Low_complexity 1 56 0 1471 202 41 0 chr12 97976014 97976281 -45810174 - AluJo SINE Alu -30 282 5 580 286 0 0 chr12 97976751 97976898 -45809557 + MIR SINE MIR 90 236 -26 183 276 69 0 chr12 97976867 97976925 -45809530 + L2 LINE L2 3251 3312 -1 * 1214 184 95 48 chr12 97977221 97977351 -45809104 + MER2 DNA MER2_type 1 123 -222 1462 181 67 11 chr12 97977351 97977633 -45808822 - AluJb SINE Alu -14 298 1 1214 184 95 48 chr12 97977633 97977817 -45808638 + MER2 DNA MER2_type 123 330 -15 3456 252 135 27 chr12 97977818 97979308 -45807147 - HAL1 LINE L1 -847 1660 10 24 0 0 0 chr12 97979320 97979344 -45807111 + AT_rich Low_complexity Low_complexity 1 24 0 569 278 122 10 chr12 97979924 97980212 -45806243 + L1ME LINE L1 5465 5784 -337 186 43 0 0 chr12 97980593 97980616 -45805839 + (TC)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr12 97980618 97980646 -45805809 + (CA)n Simple_repeat Simple_repeat 1 28 0 492 254 22 112 chr12 97980751 97981027 -45805428 + L1ME LINE L1 281 531 -5539 863 262 74 83 chr12 97981155 97982010 -45804445 + L1ME LINE L1 525 1371 -4890 2871 262 34 32 chr12 97982055 97982879 -45803576 + L1M4b LINE L1 21 846 -6013 20657 144 30 32 chr12 97983296 97990925 -45795530 - L1MA1 LINE L1 -97 7624 16 494 259 76 117 chr12 97990936 97991356 -45795099 - HAL1 LINE L1 -1267 1240 838 288 362 11 0 chr12 97991884 97991978 -45794477 - L2 LINE L2 -22 3291 3197 216 0 0 0 chr12 97993220 97993244 -45793211 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2114 112 10 10 chr12 97993776 97994072 -45792383 + AluSx SINE Alu 1 296 -16 2405 83 0 13 chr12 97994072 97994385 -45792070 + AluSg SINE Alu 1 309 -1 248 89 0 22 chr12 97994805 97994850 -45791605 + (TTTCC)n Simple_repeat Simple_repeat 2 45 0 1625 171 0 49 chr12 97995484 97995789 -45790666 + AluJo SINE Alu 17 306 -6 732 204 80 44 chr12 97995861 97996091 -45790364 - MLT1F LTR MaLR -300 267 1 3058 137 2 2 chr12 97996301 97996726 -45789729 + MER61B LTR ERV1 1 425 0 207 294 0 0 chr12 97997020 97997071 -45789384 - MIR SINE MIR -108 154 104 299 286 101 36 chr12 97997495 97997663 -45788792 + MIR SINE MIR 14 192 -70 2235 122 0 0 chr12 97997690 97997985 -45788470 + AluSx SINE Alu 1 295 -17 1980 161 13 0 chr12 97998096 97998394 -45788061 - AluJb SINE Alu -10 302 1 284 378 9 10 chr12 97998878 97999015 -45787440 - MIR SINE MIR -63 145 32 605 285 86 85 chr12 97999669 98000078 -45786377 - L2 LINE L2 -12 3260 2853 2535 54 3 3 chr12 98000078 98000375 -45786080 + AluY SINE Alu 1 297 -14 605 285 86 85 chr12 98000375 98001038 -45785417 - L2 LINE L2 -419 2853 2193 496 328 65 9 chr12 98002041 98002273 -45784182 + MIR SINE MIR 18 262 0 515 191 96 29 chr12 98002321 98002457 -45783998 - Charlie8 DNA MER1_type -2272 145 1 515 106 117 0 chr12 98002573 98002667 -45783788 + MER4E LTR ERV1 480 584 -182 1741 107 0 32 chr12 98002685 98002937 -45783518 - AluY SINE Alu -4 307 64 434 326 106 31 chr12 98002986 98003372 -45783083 - L2 LINE L2 -655 2659 2245 517 256 21 109 chr12 98003580 98003818 -45782637 - MIR SINE MIR -37 225 9 470 252 59 0 chr12 98005760 98005895 -45780560 + MIR SINE MIR 84 226 -36 841 174 32 7 chr12 98006573 98006728 -45779727 + MER33 DNA MER1_type 1 159 -165 1002 180 18 31 chr12 98006732 98006954 -45779501 + AluSx SINE Alu 1 219 -93 515 191 96 29 chr12 98007136 98007272 -45779183 - Charlie8 DNA MER1_type -2272 145 1 1564 72 44 160 chr12 98007388 98007498 -45778957 + MER4E LTR ERV1 480 601 -165 1881 144 43 7 chr12 98007498 98007797 -45778658 - AluSx SINE Alu -2 310 1 1564 72 44 160 chr12 98007797 98007958 -45778497 + MER4E LTR ERV1 601 711 -55 2100 120 7 0 chr12 98007958 98008242 -45778213 + AluSx SINE Alu 4 289 -23 1564 72 44 160 chr12 98008242 98008288 -45778167 + MER4E LTR ERV1 711 761 -5 414 240 56 40 chr12 98008424 98008576 -45777879 - MIR SINE MIR -62 146 3 229 229 60 24 chr12 98008752 98008835 -45777620 - MIR SINE MIR -70 192 107 805 144 53 37 chr12 98008980 98009167 -45777288 - MER96B DNA MER1_type? -227 190 1 2210 112 20 0 chr12 98010372 98010668 -45775787 + AluSx SINE Alu 1 302 -10 263 302 62 0 chr12 98010721 98010850 -45775605 - MIR SINE MIR -47 215 79 1098 128 30 98 chr12 98010922 98011157 -45775298 + MER20 DNA MER1_type 1 219 0 1875 163 7 0 chr12 98012468 98012756 -45773699 + AluJo SINE Alu 2 291 -21 423 124 67 11 chr12 98012876 98012965 -45773490 - MER53 DNA DNA 0 189 96 * 511 123 271 0 chr12 98012891 98013013 -45773442 + MER53 DNA DNA 25 179 -10 216 357 0 29 chr12 98013115 98013255 -45773200 + GA-rich Low_complexity Low_complexity 6 141 0 1504 193 166 25 chr12 98013464 98013639 -45772816 + LTR54B LTR ERV1 1 150 -348 2271 178 82 63 chr12 98013639 98014240 -45772215 - LTR9 LTR ERV1 0 612 1 1504 193 166 25 chr12 98014240 98014499 -45771956 + LTR54B LTR ERV1 150 496 -2 4696 133 5 66 chr12 98014964 98015166 -45771289 + LTR39 LTR ERV1 2 215 -568 2232 91 21 0 chr12 98015166 98015452 -45771003 + AluSx SINE Alu 1 292 -20 4696 133 5 66 chr12 98015452 98016082 -45770373 + LTR39 LTR ERV1 215 783 0 3030 144 50 24 chr12 98016389 98016759 -45769696 + MER41E LTR ERV1 1 389 -123 1763 135 67 0 chr12 98016759 98016873 -45769582 + AluJb SINE Alu 1 106 -206 333 0 0 0 chr12 98016873 98016910 -45769545 + (CA)n Simple_repeat Simple_repeat 2 38 0 1763 135 67 0 chr12 98016910 98017077 -45769378 + AluJb SINE Alu 106 301 -11 3030 144 50 24 chr12 98017077 98017205 -45769250 + MER41E LTR ERV1 389 512 0 690 239 19 0 chr12 98017387 98017546 -45768909 + MIR SINE MIR 30 191 -71 1808 160 7 13 chr12 98017547 98017847 -45768608 + AluJb SINE Alu 1 298 -14 2352 169 131 87 chr12 98017864 98017974 -45768481 + MER4D LTR ERV1 10 114 -789 814 119 8 37 chr12 98017974 98018108 -45768347 - FLAM_C SINE Alu -2 131 2 2352 169 131 87 chr12 98018108 98018773 -45767682 + MER4D LTR ERV1 114 903 0 191 239 70 28 chr12 98018773 98018844 -45767611 + MIR SINE MIR 189 262 0 4434 158 8 13 chr12 98018963 98019677 -45766778 - MER50 LTR ERV1 -23 711 1 352 274 146 34 chr12 98019871 98020173 -45766282 - MLT1J2 LTR MaLR -15 428 70 1026 255 90 48 chr12 98020347 98020891 -45765564 - L2 LINE L2 0 3313 2766 477 210 153 8 chr12 98020961 98021085 -45765370 - MER5A DNA MER1_type 0 189 48 1524 157 8 0 chr12 98021086 98021322 -45765133 + MLT1A1 LTR MaLR 1 238 -127 259 185 15 15 chr12 98021336 98021401 -45765054 + L2 LINE L2 2889 2953 -360 406 318 101 0 chr12 98021418 98021566 -45764889 + L2 LINE L2 2908 3070 -243 2228 113 0 0 chr12 98021668 98021961 -45764494 + AluSx SINE Alu 1 293 -19 656 189 25 0 chr12 98021970 98022092 -45764363 + MLT1A2 LTR MaLR 250 374 0 283 67 133 0 chr12 98022092 98022137 -45764318 - MER5A DNA MER1_type -138 51 1 6678 177 43 63 chr12 98022202 98022331 -45764124 - MER45R DNA AcHobo 0 1581 1451 1281 151 40 13 chr12 98022331 98022556 -45763899 + MER46A DNA MER2_type 2 232 -4 6678 177 43 63 chr12 98022556 98023248 -45763207 - MER45R DNA AcHobo -130 1451 747 2399 88 0 0 chr12 98023248 98023545 -45762910 - AluSx SINE Alu -15 297 1 6678 177 43 63 chr12 98023545 98024334 -45762121 - MER45R DNA AcHobo -834 747 1 255 241 35 0 chr12 98024439 98024497 -45761958 + MER58A DNA MER1_type 1 60 -164 1912 144 0 11 chr12 98024539 98024854 -45761601 - AluSg SINE Alu 0 312 1 1285 182 21 64 chr12 98024854 98025184 -45761271 - L1MA9 LINE L1 -60 6252 5937 868 192 58 0 chr12 98025188 98025360 -45761095 + MER58A DNA MER1_type 43 224 0 474 310 0 0 chr12 98025360 98025476 -45760979 + L2 LINE L2 3148 3263 -9 476 220 52 94 chr12 98026046 98026249 -45760206 + LTR33A LTR ERVL 1 159 -364 464 301 0 14 chr12 98026287 98026430 -45760025 + MIR SINE MIR 109 249 -13 1755 164 7 0 chr12 98026433 98026740 -45759715 + AluJb SINE Alu 1 309 0 189 0 0 0 chr12 98027201 98027222 -45759233 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2437 93 0 0 chr12 98027663 98027976 -45758479 - AluSp SINE Alu 0 313 1 636 246 121 15 chr12 98028926 98029125 -45757330 + MIR SINE MIR 40 259 -3 2138 141 49 54 chr12 98029513 98029904 -45756551 + MLT1B LTR MaLR 2 390 0 578 30 0 0 chr12 98029933 98030000 -45756455 + L1MB3 LINE L1 5804 5870 -313 6114 112 9 9 chr12 98030000 98031492 -45754963 + L1PA16 LINE L1 4678 6166 0 1551 157 59 7 chr12 98031493 98031799 -45754656 + L1MB3 LINE L1 5860 6181 -2 328 154 31 173 chr12 98032514 98032587 -45753868 + L1MC4 LINE L1 6939 6978 -1064 2214 121 0 7 chr12 98032587 98032885 -45753570 + AluSx SINE Alu 1 296 -16 328 154 31 173 chr12 98032885 98032973 -45753482 + L1MC4 LINE L1 6978 7077 -965 1417 193 39 184 chr12 98032975 98033352 -45753103 + L1MC4 LINE L1 7160 7590 -452 1975 142 3 10 chr12 98033352 98033655 -45752800 + AluSx SINE Alu 1 301 -11 1417 193 39 184 chr12 98033655 98033720 -45752735 + L1MC4 LINE L1 7590 7663 -379 757 152 0 16 chr12 98033720 98033845 -45752610 + FLAM_C SINE Alu 21 143 0 1417 193 39 184 chr12 98033845 98034095 -45752360 + L1MC4 LINE L1 7663 7900 -142 186 171 0 0 chr12 98034146 98034187 -45752268 + A-rich Low_complexity Low_complexity 1 41 0 387 0 0 0 chr12 98034399 98034442 -45752013 + (TG)n Simple_repeat Simple_repeat 2 44 0 542 235 130 15 chr12 98034781 98034981 -45751474 + MIR SINE MIR 40 262 0 328 285 140 43 chr12 98035472 98035658 -45750797 + MIR SINE MIR 4 207 -55 2304 117 16 47 chr12 98035666 98036051 -45750404 - THE1C LTR MaLR 0 375 3 28 29 0 0 chr12 98036169 98036204 -45750251 + AT_rich Low_complexity Low_complexity 1 35 0 636 255 70 20 chr12 98036314 98036514 -45749941 + MLT1J LTR MaLR 39 248 -263 369 173 37 12 chr12 98036527 98036608 -45749847 + MLT1J LTR MaLR 412 494 -17 245 307 0 0 chr12 98037076 98037151 -45749304 + MIR SINE MIR 179 253 -9 216 267 0 0 chr12 98037152 98037197 -45749258 + (ATG)n Simple_repeat Simple_repeat 3 47 0 703 213 67 0 chr12 98037811 98037975 -45748480 + MER69A DNA AcHobo 2 176 -1 2190 128 3 6 chr12 98038768 98039081 -45747374 - AluSx SINE Alu 0 312 1 1972 116 12 35 chr12 98039881 98040200 -45746255 + AluJo SINE Alu 1 312 0 2287 103 6 6 chr12 98040334 98040646 -45745809 - AluSp SINE Alu -1 312 1 232 319 53 53 chr12 98041151 98041320 -45745135 - MLT1K LTR MaLR -396 192 24 2278 120 0 0 chr12 98041507 98041806 -45744649 + AluSx SINE Alu 1 299 -13 666 275 192 33 chr12 98041868 98042410 -45744045 - HAL1 LINE L1 -408 2099 1472 992 283 88 25 chr12 98042462 98042653 -45743802 - HAL1 LINE L1 -1198 1309 1131 3752 121 49 0 chr12 98042653 98043206 -45743249 + LTR19B LTR ERV1 1 580 0 992 283 88 25 chr12 98043206 98043537 -45742918 - HAL1 LINE L1 -1376 1131 754 2067 155 80 0 chr12 98043680 98044041 -45742414 + MLT1B LTR MaLR 1 390 0 2138 134 3 3 chr12 98044408 98044713 -45741742 + AluSx SINE Alu 1 305 -7 207 303 101 10 chr12 98044713 98044812 -45741643 - L2 LINE L2 -30 3283 3176 752 307 85 22 chr12 98044919 98045320 -45741135 + LTR67 LTR ERVL 125 550 -7 375 333 8 0 chr12 98045505 98045625 -45740830 - L2 LINE L2 0 3313 3193 2756 85 3 6 chr12 98045843 98046206 -45740249 + THE1B LTR MaLR 1 362 -2 614 315 43 12 chr12 98046846 98047100 -45739355 - MIR SINE MIR 0 262 1 23 0 0 0 chr12 98047489 98047512 -45738943 + AT_rich Low_complexity Low_complexity 1 23 0 829 137 0 0 chr12 98048310 98048427 -45738028 - FLAM_C SINE Alu -26 117 1 667 128 47 7 chr12 98048560 98048708 -45737747 + GA-rich Low_complexity Low_complexity 3 156 0 256 239 15 15 chr12 98048711 98048778 -45737677 - L1ME4a LINE L1 -88 6033 5967 1552 158 60 49 chr12 98048843 98049128 -45737327 + AluJo SINE Alu 2 289 -23 2516 129 58 34 chr12 98049258 98049671 -45736784 + MER4B LTR ERV1 1 601 -165 2023 128 27 10 chr12 98049671 98049969 -45736486 - AluSx SINE Alu -9 303 1 2516 129 58 34 chr12 98049969 98050139 -45736316 + MER4B LTR ERV1 601 765 -1 424 198 79 24 chr12 98050878 98051004 -45735451 - L1MB5 LINE L1 -8 6166 6034 258 304 10 20 chr12 98052719 98052821 -45733634 + Charlie2b DNA MER1_type 1557 1657 -1125 495 187 86 43 chr12 98052879 98053018 -45733437 + Charlie2b DNA MER1_type 1844 1908 -874 1857 124 67 0 chr12 98053023 98053290 -45733165 + AluJb SINE Alu 1 285 -27 1202 247 41 11 chr12 98053618 98053987 -45732468 + L1ME2 LINE L1 3639 4018 -2128 1264 233 3 0 chr12 98054014 98054302 -45732153 + L1ME2 LINE L1 5693 5981 -183 393 244 0 0 chr12 98054326 98054408 -45732047 - Tigger5 DNA MER2_type -2233 90 9 2361 100 0 0 chr12 98054420 98054721 -45731734 - AluSq SINE Alu -12 301 1 3506 278 125 18 chr12 98054788 98055414 -45731041 - L2 LINE L2 -178 3135 2578 1800 195 44 88 chr12 98055414 98055958 -45730497 + MLT2B1 LTR ERVL 1 520 0 3506 278 125 18 chr12 98055958 98056895 -45729560 - L2 LINE L2 -735 2578 1397 252 214 14 57 chr12 98056910 98056980 -45729475 + MIR SINE MIR 47 113 -95 2442 104 96 13 chr12 98057242 98057637 -45728818 - MSTA LTR MaLR 0 428 1 702 290 56 40 chr12 98058464 98058767 -45727688 - L3 LINE CR1 -2 1575 1268 332 62 21 21 chr12 98058823 98058871 -45727584 - LTR67 LTR ERVL 0 557 510 1633 200 38 5 chr12 98058875 98059249 -45727206 - MLT1F1 LTR MaLR 0 567 132 279 167 0 0 chr12 98059252 98059318 -45727137 + (TA)n Simple_repeat Simple_repeat 2 67 0 328 283 42 68 chr12 98059621 98059812 -45726643 + LTR68 LTR ERV1 503 688 -52 232 185 37 19 chr12 98059855 98059909 -45726546 - MLT1F1 LTR MaLR -421 146 92 8040 162 10 12 chr12 98059909 98060582 -45725873 + L1PB3 LINE L1 3709 4382 -1772 1589 185 51 0 chr12 98060582 98060874 -45725581 + AluJb SINE Alu 1 307 -5 8040 162 10 12 chr12 98060874 98062648 -45723807 + L1PB3 LINE L1 4382 6150 -4 584 170 19 0 chr12 98062660 98062766 -45723689 - MLT1F1 LTR MaLR -459 108 1 533 294 58 97 chr12 98062771 98062926 -45723529 - MLT1F1-int LTR MaLR -15 1356 1197 918 127 0 8 chr12 98062926 98063060 -45723395 - FLAM_C SINE Alu 0 133 1 533 294 58 97 chr12 98063060 98063316 -45723139 - MLT1F1-int LTR MaLR -174 1197 961 3805 150 7 10 chr12 98063357 98063956 -45722499 + MER39B LTR ERV1 1 597 -56 460 341 64 0 chr12 98064027 98064200 -45722255 - MLT1F1-int LTR MaLR -491 880 697 703 289 48 26 chr12 98064453 98064925 -45721530 - MLT1F1-int LTR MaLR -770 601 1 960 172 37 0 chr12 98064927 98065090 -45721365 - MLT1F1 LTR MaLR -2 565 397 2799 10 0 0 chr12 98065260 98065560 -45720895 + AluY SINE Alu 1 300 -11 349 336 93 0 chr12 98065709 98065849 -45720606 - L3 LINE CR1 -398 1179 1027 273 279 81 43 chr12 98066149 98066310 -45720145 + L2 LINE L2 2550 2716 -598 1275 173 0 17 chr12 98066383 98066614 -45719841 - AluSg/x SINE Alu -1 311 85 367 332 98 53 chr12 98066622 98067147 -45719308 + L2 LINE L2 2760 3309 -4 599 210 6 0 chr12 98067298 98067474 -45718981 + CT-rich Low_complexity Low_complexity 4 180 0 198 233 0 0 chr12 98067506 98067566 -45718889 + CT-rich Low_complexity Low_complexity 3 62 0 911 128 0 17 chr12 98067576 98067755 -45718700 + (TCCC)n Simple_repeat Simple_repeat 1 176 0 777 176 0 0 chr12 98067789 98067965 -45718490 + CT-rich Low_complexity Low_complexity 3 178 0 321 271 24 0 chr12 98068764 98068849 -45717606 + MIR SINE MIR 61 147 -115 1758 161 0 11 chr12 98068850 98069123 -45717332 + AluJb SINE Alu 18 287 -25 311 208 57 0 chr12 98069281 98069334 -45717121 - MLT1I LTR MaLR -126 283 228 904 245 64 39 chr12 98069637 98070044 -45716411 - MLT1D LTR MaLR -7 460 21 21 0 0 0 chr12 98070293 98070314 -45716141 + AT_rich Low_complexity Low_complexity 1 21 0 2423 71 0 26 chr12 98071231 98071541 -45714914 + AluY SINE Alu 1 302 -9 1935 222 23 67 chr12 98071627 98072182 -45714273 + LTR26B LTR ERV1 1 531 0 290 317 63 70 chr12 98072267 98072712 -45713743 + MLT1K LTR MaLR 141 582 -6 869 146 0 0 chr12 98072712 98072842 -45713613 + FLAM_C SINE Alu 1 130 -3 212 344 8 70 chr12 98073265 98073393 -45713062 - MIR SINE MIR -66 142 23 862 304 47 0 chr12 98075120 98075377 -45711078 + LTR16B LTR ERVL 72 340 -124 1121 286 75 14 chr12 98075508 98075991 -45710464 - LTR33 LTR ERVL -6 515 4 282 348 37 5 chr12 98076604 98076791 -45709664 + L2 LINE L2 2461 2653 -661 229 211 0 132 chr12 98077106 98077182 -45709273 - MLT1L LTR MaLR -508 107 42 441 298 67 35 chr12 98077198 98077483 -45708972 + L2 LINE L2 2671 2964 -350 711 270 6 0 chr12 98077884 98078058 -45708397 + MIR SINE MIR 78 252 -10 340 277 130 51 chr12 98078623 98078800 -45707655 - MIR3 SINE MIR -10 198 8 2378 106 0 0 chr12 98078841 98079152 -45707303 - AluSp SINE Alu -2 311 1 208 309 18 0 chr12 98079463 98079518 -45706937 + MIR SINE MIR 44 99 -109 355 307 170 29 chr12 98079531 98079837 -45706618 - L3 LINE CR1 -267 1310 962 429 340 122 16 chr12 98079895 98080207 -45706248 - L3 LINE CR1 -1051 526 182 1001 177 6 0 chr12 98080348 98080512 -45705943 - FRAM SINE Alu -11 165 1 985 67 0 0 chr12 98080593 98080712 -45705743 - AluSc SINE Alu -5 304 186 2082 75 4 0 chr12 98080713 98080968 -45705487 - AluSg SINE Alu -54 256 1 2483 84 0 0 chr12 98080968 98081266 -45705189 - AluSc SINE Alu -11 298 1 1050 264 134 41 chr12 98081314 98081776 -45704679 - MLT1J LTR MaLR -6 505 1 405 285 89 0 chr12 98082563 98082686 -45703769 - MER117 DNA MER1_type -62 135 2 363 176 7 155 chr12 98084634 98084782 -45701673 + LTR67 LTR ERVL 432 557 0 21 0 0 0 chr12 98085099 98085120 -45701335 + AT_rich Low_complexity Low_complexity 1 21 0 435 274 73 18 chr12 98085237 98085340 -45701115 - MER104 DNA Tc2 -1721 177 60 1531 177 86 46 chr12 98085340 98085690 -45700765 + MLT1A1 LTR MaLR 2 365 0 435 274 73 18 chr12 98085690 98085750 -45700705 - MER104 DNA Tc2 -1838 60 5 557 53 0 0 chr12 98085806 98085881 -45700574 - L1PA5 LINE L1 -1 6153 6079 316 200 40 13 chr12 98085882 98085957 -45700498 - MIR SINE MIR -34 228 152 2106 123 27 0 chr12 98086123 98086423 -45700032 - AluSq SINE Alu -5 308 1 446 204 20 10 chr12 98087289 98087387 -45699068 - MER103 DNA DNA -49 117 19 878 214 30 39 chr12 98088490 98088653 -45697802 + MLT1I LTR MaLR 1 164 -245 7994 19 0 0 chr12 98088653 98090146 -45696309 + L1PA2 LINE L1 4665 6155 0 878 214 30 39 chr12 98090146 98090349 -45696106 + MLT1I LTR MaLR 164 407 -2 1364 157 78 0 chr12 98090569 98090837 -45695618 + L1MB2 LINE L1 5743 6031 -140 3322 134 82 37 chr12 98091033 98091658 -45694797 - MER39B LTR ERV1 0 653 1 1651 125 29 0 chr12 98093115 98093355 -45693100 - AluSx SINE Alu -61 251 5 1523 98 19 49 chr12 98093947 98094213 -45692242 + LTR23 LTR ERV1 175 432 -5 843 172 12 71 chr12 98094425 98094594 -45691861 + FRAM SINE Alu 5 163 -3 4045 126 59 38 chr12 98094627 98095339 -45691116 + LTR8A LTR ERV1 1 727 0 344 297 51 8 chr12 98096565 98096683 -45689772 - MIR SINE MIR -80 182 60 1517 158 77 41 chr12 98098186 98098548 -45687907 - THE1C LTR MaLR 0 375 1 384 305 100 82 chr12 98100084 98100353 -45686102 - L2 LINE L2 -20 3252 2979 204 299 102 34 chr12 98100468 98100615 -45685840 - L2 LINE L2 -468 2846 2690 1773 131 4 0 chr12 98101587 98101832 -45684623 + AluSp SINE Alu 1 246 -67 1019 237 0 24 chr12 98102548 98102759 -45683696 - MER58A DNA MER1_type 0 224 19 3631 139 19 64 chr12 98102759 98103028 -45683427 + MER39 LTR ERV1 1 281 -426 2195 96 3 7 chr12 98103028 98103320 -45683135 + AluSc SINE Alu 1 291 -18 3631 139 19 64 chr12 98103320 98103747 -45682708 + MER39 LTR ERV1 281 707 0 1223 277 102 9 chr12 98103785 98104247 -45682208 + LTR33 LTR ERVL 1 505 -16 406 315 0 0 chr12 98104308 98104416 -45682039 + MLT1K LTR MaLR 128 235 -353 864 160 65 18 chr12 98104416 98104585 -45681870 - AluSg/x SINE Alu -12 300 124 381 272 88 0 chr12 98105455 98105569 -45680886 + MER117 DNA MER1_type 1 124 -73 1885 133 104 68 chr12 98105980 98106395 -45680060 + MER34C LTR ERV1 5 434 -151 2926 130 24 0 chr12 98106414 98106836 -45679619 - MSTB1 LTR MaLR 0 432 1 1524 207 128 26 chr12 98106934 98107388 -45679067 + LTR48B LTR ERV1 145 644 0 680 118 118 44 chr12 98107389 98107525 -45678930 + MER34C LTR ERV1 440 585 0 522 249 39 34 chr12 98107601 98107806 -45678649 + LTR67 LTR ERVL 331 536 -21 21 36 0 0 chr12 98107885 98107913 -45678542 + AT_rich Low_complexity Low_complexity 1 28 0 274 311 6 85 chr12 98108728 98108892 -45677563 + L1MEc LINE L1 37 187 -6209 1306 207 24 99 chr12 98109414 98109796 -45676659 - MLT1A1 LTR MaLR -12 353 1 3512 289 74 21 chr12 98109818 98110836 -45675619 + L1MEc LINE L1 706 1668 -4547 2068 148 7 0 chr12 98110836 98111140 -45675315 + AluSx SINE Alu 1 306 -6 3512 289 74 21 chr12 98111140 98112743 -45673712 + L1MEc LINE L1 1668 3627 -2588 1346 252 87 85 chr12 98112845 98113219 -45673236 - MER21B LTR ERV1 -169 694 317 2368 95 0 0 chr12 98113219 98113515 -45672940 - AluY SINE Alu -15 296 1 1346 252 87 85 chr12 98113515 98113810 -45672645 - MER21B LTR ERV1 -546 317 24 297 153 69 14 chr12 98114110 98114182 -45672273 + HsTC2 DNA Tc2 3 78 -1820 859 181 0 0 chr12 98114208 98114335 -45672120 - FLAM_C SINE Alu -6 127 1 400 318 48 0 chr12 98114421 98114547 -45671908 - MIR SINE MIR -128 134 3 941 234 5 29 chr12 98114547 98114756 -45671699 + MIR SINE MIR 59 262 0 678 230 30 115 chr12 98115152 98115239 -45671216 - MER112 DNA MER1_type -13 247 154 2158 123 0 16 chr12 98115239 98115555 -45670900 + AluSx SINE Alu 1 311 -1 678 230 30 115 chr12 98115555 98115737 -45670718 - MER112 DNA MER1_type -106 154 1 2008 117 0 4 chr12 98116439 98116713 -45669742 + AluSx SINE Alu 1 273 -39 415 275 128 13 chr12 98117605 98117754 -45668701 - MARNA DNA Mariner -139 447 282 395 248 37 128 chr12 98118223 98118598 -45667857 - L1ME4a LINE L1 -69 6052 5712 1815 161 118 9 chr12 98118677 98119006 -45667449 + MLT1A1 LTR MaLR 1 365 0 6176 152 9 23 chr12 98119043 98121114 -45665341 + L1PA16 LINE L1 4125 6165 -1 195 42 0 0 chr12 98121239 98121263 -45665192 + (TG)n Simple_repeat Simple_repeat 1 24 0 797 298 105 27 chr12 98121349 98121993 -45664462 - L1MC4a LINE L1 -786 5360 5174 21 57 0 0 chr12 98122090 98122125 -45664330 + AT_rich Low_complexity Low_complexity 1 35 0 1299 119 82 0 chr12 98122390 98122584 -45663871 - AluSg/x SINE Alu -16 296 87 404 313 78 32 chr12 98122604 98123128 -45663327 - L1MC4a LINE L1 -1506 4640 4093 1299 178 10 5 chr12 98123129 98123337 -45663118 + MER21B LTR ERV1 1 209 -654 36866 99 16 14 chr12 98123459 98129580 -45656875 - L1PA7 LINE L1 -1 6153 11 309 299 112 56 chr12 98129875 98129940 -45656515 - L1MC4a LINE L1 -2756 3390 3330 771 152 27 165 chr12 98129940 98130164 -45656291 - 7SK RNA RNA 0 193 1 309 299 112 56 chr12 98130164 98130402 -45656053 - L1MC4a LINE L1 -2816 3330 3070 22 35 0 0 chr12 98130524 98130553 -45655902 + AT_rich Low_complexity Low_complexity 1 29 0 395 333 217 8 chr12 98130598 98130976 -45655479 + L2 LINE L2 2164 2620 -694 502 314 142 50 chr12 98131257 98131617 -45654838 - MLT1L LTR MaLR -5 610 218 182 315 41 14 chr12 98131782 98131855 -45654600 - MIR SINE MIR -165 97 23 894 239 0 0 chr12 98134141 98134304 -45652151 + FRAM SINE Alu 1 163 -3 206 135 0 27 chr12 98134304 98134341 -45652114 + (GGGGA)n Simple_repeat Simple_repeat 4 39 0 852 159 17 17 chr12 98134345 98134543 -45651912 + GA-rich Low_complexity Low_complexity 1 197 -562 2074 132 16 3 chr12 98134543 98134847 -45651608 + AluSx SINE Alu 1 308 -4 852 159 17 17 chr12 98134847 98135104 -45651351 + GA-rich Low_complexity Low_complexity 197 759 0 1191 121 0 28 chr12 98135221 98135403 -45651052 - AluSg/x SINE Alu -6 304 128 2091 120 16 3 chr12 98135403 98135711 -45650744 - AluSx SINE Alu 0 312 1 2530 53 0 10 chr12 98135723 98136026 -45650429 - AluY SINE Alu -11 300 1 271 229 33 0 chr12 98136116 98136177 -45650278 + MLT1F1 LTR MaLR 69 131 -436 1950 184 46 3 chr12 98136177 98136547 -45649908 + L1MC3 LINE L1 7194 7579 -206 1660 192 0 3 chr12 98136548 98136856 -45649599 - AluJb SINE Alu 0 307 1 1121 107 41 25 chr12 98136875 98137071 -45649384 + L1MC2 LINE L1 6136 6334 -10 1291 215 58 87 chr12 98137092 98137461 -45648994 + MER34B LTR ERV1 1 379 -186 2113 134 142 16 chr12 98137461 98137841 -45648614 + MSTA LTR MaLR 1 428 0 11174 118 3 35 chr12 98137843 98139473 -45646982 + MSTA-int LTR MaLR 3 1580 0 2129 128 136 18 chr12 98139473 98139856 -45646599 + MSTA LTR MaLR 1 428 0 1291 215 58 87 chr12 98139856 98140012 -45646443 + MER34B LTR ERV1 378 563 -2 639 264 143 14 chr12 98140240 98140318 -45646137 - MIR SINE MIR -7 255 188 2878 138 24 2 chr12 98140318 98140739 -45645716 - MSTB1 LTR MaLR -2 430 1 639 264 143 14 chr12 98140739 98140876 -45645579 - MIR SINE MIR -74 188 12 489 281 0 0 chr12 98141418 98141532 -45644923 - MER94 DNA DNA -20 114 1 2374 98 0 0 chr12 98142164 98142471 -45643984 - AluSg1 SINE Alu -2 307 1 760 144 8 0 chr12 98142813 98142938 -45643517 + L1MB3 LINE L1 6058 6183 0 519 307 21 59 chr12 98143882 98144013 -45642442 + MIR SINE MIR 34 155 -107 2285 82 0 0 chr12 98144013 98144326 -45642129 + AluY SINE Alu 1 313 0 519 307 21 59 chr12 98144326 98144431 -45642024 + MIR SINE MIR 155 262 0 274 29 0 0 chr12 98144730 98144765 -45641690 + L1MA2 LINE L1 6267 6301 -3 249 235 99 25 chr12 98144843 98144924 -45641531 - L2 LINE L2 -2 3311 3225 229 359 11 22 chr12 98144975 98145067 -45641388 + L2 LINE L2 3101 3191 -81 1957 269 89 71 chr12 98145123 98146180 -45640275 - L1MEd LINE L1 -5040 1079 4 371 333 33 38 chr12 98146613 98146796 -45639659 + MER5A DNA MER1_type 2 183 -6 220 196 0 0 chr12 98146952 98146998 -45639457 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 636 281 28 18 chr12 98148245 98148462 -45637993 - MLT1I LTR MaLR 0 409 191 258 330 62 9 chr12 98148518 98148630 -45637825 - MIR3 SINE MIR -51 157 40 2048 218 130 26 chr12 98148631 98149168 -45637287 + MLT1E LTR MaLR 1 593 0 399 324 91 28 chr12 98149223 98149510 -45636945 + L2 LINE L2 2376 2680 -634 180 0 0 0 chr12 98150496 98150516 -45635939 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2274 100 3 0 chr12 98150516 98150801 -45635654 - AluSx SINE Alu -26 286 1 1567 187 30 10 chr12 98151433 98151732 -45634723 + AluJo SINE Alu 1 305 -7 360 0 0 0 chr12 98151990 98152030 -45634425 + (TG)n Simple_repeat Simple_repeat 1 40 0 380 276 9 0 chr12 98152380 98152485 -45633970 + MER5A DNA MER1_type 14 119 -70 182 158 49 110 chr12 98152546 98152628 -45633827 + MER5A DNA MER1_type 113 189 0 317 164 98 0 chr12 98152761 98152822 -45633633 - LTR8 LTR ERV1 -624 67 1 195 244 167 11 chr12 98152822 98152912 -45633543 + MIR SINE MIR 123 226 -36 850 266 126 38 chr12 98153545 98153917 -45632538 - MLT1I LTR MaLR -3 406 2 201 259 0 35 chr12 98154680 98154738 -45631717 - MER91A DNA MER1_type -1 195 140 384 301 45 83 chr12 98154823 98154979 -45631476 - MER91A DNA MER1_type -46 150 1 560 240 0 40 chr12 98155121 98155271 -45631184 - MLT1J2 LTR MaLR -306 144 1 251 227 64 139 chr12 98155456 98155628 -45630827 - MLT1J2-int LTR MaLR -193 1178 1020 3970 72 14 0 chr12 98155859 98156376 -45630079 + L1PA10 LINE L1 5642 6165 -3 3951 152 15 33 chr12 98156379 98156826 -45629629 - L1MB8 LINE L1 -53 6125 5695 2054 151 3 0 chr12 98156826 98157130 -45629325 + AluJb SINE Alu 1 305 -7 3951 152 15 33 chr12 98157130 98157419 -45629036 - L1MB8 LINE L1 -483 5695 5402 703 224 63 0 chr12 98157444 98157618 -45628837 + MIR SINE MIR 72 256 -6 606 212 113 13 chr12 98158065 98158216 -45628239 - MER91A DNA MER1_type -30 166 1 26 0 0 0 chr12 98159044 98159070 -45627385 + AT_rich Low_complexity Low_complexity 1 26 0 573 311 17 47 chr12 98159093 98159328 -45627127 - MIR SINE MIR -34 228 1 2230 148 51 65 chr12 98159430 98159864 -45626591 - MSTA LTR MaLR 0 428 1 698 248 79 25 chr12 98160006 98160275 -45626180 + MLT1H1 LTR MaLR 15 266 -289 1877 210 19 7 chr12 98160314 98160687 -45625768 - MLT2D LTR ERVL -40 480 4 800 260 56 5 chr12 98160687 98160876 -45625579 + MLT1H1 LTR MaLR 355 553 -2 309 307 40 47 chr12 98161053 98161203 -45625252 + MIR SINE MIR 63 211 -51 235 303 128 28 chr12 98161825 98162036 -45624419 + L2 LINE L2 2831 3062 -210 975 239 20 37 chr12 98162096 98162427 -45624028 - LTR37B LTR ERV1 0 468 111 303 269 141 32 chr12 98162417 98162573 -45623882 - LTR37B LTR ERV1 -271 197 25 * 384 22 0 0 chr12 98162573 98162618 -45623837 + (TG)n Simple_repeat Simple_repeat 2 46 0 310 384 33 0 chr12 98162641 98162792 -45623663 + L2 LINE L2 3116 3271 -1 332 219 102 86 chr12 98163966 98164094 -45622361 + MER94 DNA DNA 5 134 0 287 311 28 0 chr12 98164211 98164317 -45622138 - MLT1L LTR MaLR 0 615 507 2420 97 45 11 chr12 98164343 98164695 -45621760 - THE1B LTR MaLR 0 364 1 375 261 24 104 chr12 98164716 98164852 -45621603 - MLT1L LTR MaLR -223 392 277 2209 116 0 0 chr12 98164852 98165153 -45621302 + AluSg SINE Alu 1 301 -9 375 261 24 104 chr12 98165153 98165227 -45621228 - MLT1L LTR MaLR -338 277 199 395 284 9 0 chr12 98165958 98166067 -45620388 - MIR SINE MIR -68 194 85 395 285 201 0 chr12 98166217 98166396 -45620059 + L2 LINE L2 2848 3062 -251 805 122 65 0 chr12 98166598 98166721 -45619734 + FLAM_C SINE Alu 1 131 -2 212 271 73 21 chr12 98166823 98166919 -45619536 - MIR3 SINE MIR -48 160 60 185 0 40 0 chr12 98166921 98166946 -45619509 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 368 279 58 19 chr12 98166991 98167145 -45619310 + MIR SINE MIR 89 248 -14 2449 84 0 3 chr12 98167276 98167587 -45618868 - AluY SINE Alu -1 310 1 1718 186 8 65 chr12 98167649 98168031 -45618424 - MLT1A1 LTR MaLR 0 365 6 458 305 59 17 chr12 98168502 98168693 -45617762 + MIR SINE MIR 33 230 -32 255 284 0 0 chr12 98169727 98169794 -45616661 + MLT1J1 LTR MaLR 92 158 -288 245 302 146 19 chr12 98170177 98170382 -45616073 + L2 LINE L2 2833 3063 -250 1004 229 111 49 chr12 98170383 98170445 -45616010 - MLT1E LTR MaLR 0 593 536 2332 100 0 7 chr12 98170445 98170744 -45615711 - AluSg SINE Alu -13 297 1 1004 229 111 49 chr12 98170744 98171183 -45615272 - MLT1E LTR MaLR -57 536 1 5825 51 3 0 chr12 98171183 98172062 -45614393 + L1PA6 LINE L1 5078 5959 -195 233 167 37 0 chr12 98172105 98172159 -45614296 + L2 LINE L2 2450 2505 -809 484 277 143 45 chr12 98172190 98172421 -45614034 + L2 LINE L2 2637 2844 -469 1774 156 0 39 chr12 98172421 98172729 -45613726 - AluJo SINE Alu -16 296 1 484 277 143 45 chr12 98172729 98172984 -45613471 + L2 LINE L2 2844 3184 -129 1790 132 140 71 chr12 98172992 98173357 -45613098 - MLT1B LTR MaLR 0 390 1 221 259 176 0 chr12 98174279 98174364 -45612091 + MIR SINE MIR 7 106 -156 17083 65 11 0 chr12 98174479 98177456 -45608999 + L1PA6 LINE L1 3146 6150 -4 1056 274 101 27 chr12 98177571 98177884 -45608571 - L2 LINE L2 -191 3122 2834 2429 92 0 0 chr12 98177884 98178189 -45608266 - AluSx SINE Alu -7 305 1 1056 274 101 27 chr12 98178189 98178512 -45607943 - L2 LINE L2 -479 2834 2436 286 285 65 24 chr12 98178621 98178744 -45607711 + MIR SINE MIR 57 184 -78 1870 112 26 77 chr12 98179066 98179378 -45607077 - AluJb SINE Alu -16 296 1 238 309 56 40 chr12 98179707 98179833 -45606622 + MIR SINE MIR 75 202 -60 259 264 23 35 chr12 98179917 98180004 -45606451 + MER5A DNA MER1_type 8 93 -96 345 24 0 0 chr12 98180958 98181000 -45605455 + (GA)n Simple_repeat Simple_repeat 1 42 0 301 284 137 14 chr12 98182550 98182739 -45603716 - MIR SINE MIR -40 222 14 473 275 39 56 chr12 98182819 98182997 -45603458 - MER5B DNA MER1_type -3 175 1 2289 174 90 6 chr12 98183153 98183619 -45602836 + MLT1D LTR MaLR 1 505 0 278 242 195 16 chr12 98183644 98183772 -45602683 + MIR SINE MIR 112 262 0 443 287 123 40 chr12 98184385 98184636 -45601819 - MLT1J1 LTR MaLR -112 334 63 424 283 94 40 chr12 98184708 98184931 -45601524 + MLT1K LTR MaLR 192 426 -162 261 272 132 7 chr12 98185218 98185354 -45601101 - MIR SINE MIR -9 253 101 1169 201 23 0 chr12 98185391 98185610 -45600845 - MER58A DNA MER1_type 0 224 1 191 283 130 33 chr12 98185644 98185736 -45600719 + MIR SINE MIR 33 133 -75 377 172 34 135 chr12 98186674 98186905 -45599550 - MER58 DNA MER1_type -24 2396 5 204 197 42 183 chr12 98186915 98186970 -45599485 + MIR SINE MIR 56 81 -181 2063 132 42 0 chr12 98186970 98187259 -45599196 - AluSx SINE Alu -11 301 1 204 197 42 183 chr12 98187259 98187345 -45599110 + MIR SINE MIR 81 177 -85 2229 139 56 53 chr12 98187563 98187994 -45598461 + MSTB1 LTR MaLR 1 432 0 24 0 0 0 chr12 98188013 98188037 -45598418 + AT_rich Low_complexity Low_complexity 1 24 0 765 275 106 13 chr12 98188871 98189173 -45597282 - L1ME3A LINE L1 -225 5945 5616 922 152 0 55 chr12 98189326 98189490 -45596965 - AluJb SINE Alu -17 295 141 2894 103 36 7 chr12 98189493 98189909 -45596546 + MSTA LTR MaLR 1 428 0 758 158 42 0 chr12 98189918 98190038 -45596417 - FLAM_C SINE Alu -7 126 2 335 263 120 8 chr12 98190103 98190236 -45596219 - L2 LINE L2 -2 3311 3164 4966 131 53 15 chr12 98190258 98191111 -45595344 + L1MB3 LINE L1 5259 6143 -40 6487 162 38 2 chr12 98191115 98192158 -45594297 + L1M1 LINE L1 16 1096 -6469 4545 116 4 6 chr12 98192158 98192842 -45593613 + L1MA3 LINE L1 5622 6304 -1 9308 149 31 31 chr12 98192868 98194570 -45591885 + L1M1 LINE L1 1420 3122 -4443 19288 73 8 1 chr12 98194672 98197220 -45589235 - L1P LINE L1 -1943 4203 1639 2152 127 0 0 chr12 98197332 98197651 -45588804 + AluSx SINE Alu 1 319 0 816 181 0 0 chr12 98198263 98198396 -45588059 - FLAM_A SINE Alu 0 133 1 2066 153 0 0 chr12 98198969 98199270 -45587185 + AluJb SINE Alu 1 301 -11 389 299 76 13 chr12 98199651 98199808 -45586647 - MIR SINE MIR -17 245 79 378 0 0 0 chr12 98201624 98201666 -45584789 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 400 33 0 chr12 98202473 98202593 -45583862 + MIR SINE MIR 124 247 -15 448 194 83 9 chr12 98203225 98203333 -45583122 + MIR SINE MIR 73 188 -74 1621 194 0 6 chr12 98203347 98203661 -45582794 - AluJo SINE Alu 0 312 1 379 240 10 48 chr12 98204702 98204806 -45581649 - MIR SINE MIR -132 130 31 189 0 0 0 chr12 98204884 98204905 -45581550 + (T)n Simple_repeat Simple_repeat 1 21 0 556 308 89 25 chr12 98204989 98205304 -45581151 - MLT1K LTR MaLR -2 586 252 1319 86 6 0 chr12 98205306 98205481 -45580974 + AluSc SINE Alu 123 298 -11 1414 113 0 10 chr12 98205911 98206115 -45580340 - AluY SINE Alu -109 202 1 670 291 63 56 chr12 98206125 98206410 -45580045 - MER21B LTR ERV1 -553 310 24 366 23 0 0 chr12 98206765 98206808 -45579647 + (CA)n Simple_repeat Simple_repeat 1 43 0 487 239 22 22 chr12 98206844 98206978 -45579477 - MIR SINE MIR -8 254 121 772 284 105 36 chr12 98207776 98208138 -45578317 - L2 LINE L2 -6 3307 2921 1920 90 0 4 chr12 98208152 98208407 -45578048 + AluSg SINE Alu 1 254 -56 317 376 30 0 chr12 98208523 98208656 -45577799 - L2 LINE L2 -9 3304 3168 318 317 50 35 chr12 98208704 98208892 -45577563 - MIR SINE MIR -19 189 11 203 304 128 46 chr12 98210767 98210935 -45575520 + MIR SINE MIR 15 191 -70 358 293 25 61 chr12 98211012 98211164 -45575291 + MIR SINE MIR 50 195 -67 1655 126 4 15 chr12 98211164 98211426 -45575029 + AluJo SINE Alu 39 297 -15 358 293 25 61 chr12 98211426 98211471 -45574984 + MIR SINE MIR 195 240 -22 409 299 16 8 chr12 98211811 98211938 -45574517 + MIR SINE MIR 127 254 -8 410 272 40 40 chr12 98212030 98212203 -45574252 + Charlie8 DNA MER1_type 103 275 -2142 548 300 76 9 chr12 98213011 98213221 -45573234 + L2 LINE L2 3083 3306 -7 194 379 64 50 chr12 98213226 98213445 -45573010 - L2 LINE L2 -86 3186 2965 318 261 239 7 chr12 98213541 98213683 -45572772 - MER5A DNA MER1_type -11 178 4 841 181 11 32 chr12 98215637 98215825 -45570630 - AluJb SINE Alu 0 312 129 243 279 122 10 chr12 98215835 98215939 -45570516 - MIR SINE MIR -74 134 26 2106 100 7 3 chr12 98215940 98216239 -45570216 - AluSx SINE Alu -12 300 1 417 211 250 0 chr12 98216249 98216377 -45570078 - MIR SINE MIR -99 163 4 980 168 74 20 chr12 98216415 98216617 -45569838 + MIR SINE MIR 36 248 -14 439 160 90 10 chr12 98216926 98217026 -45569429 + L2 LINE L2 3175 3282 -31 216 0 0 0 chr12 98217049 98217073 -45569382 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 677 247 67 6 chr12 98217595 98217773 -45568682 - MER5A DNA MER1_type 0 189 1 485 278 109 0 chr12 98217773 98217928 -45568527 - MIR SINE MIR -62 146 3 417 281 74 0 chr12 98218025 98218160 -45568295 - MIR SINE MIR -23 239 95 226 317 37 0 chr12 98218627 98218709 -45567746 + MIR SINE MIR 109 193 -69 768 248 77 44 chr12 98218963 98219261 -45567194 - LTR16C LTR ERVL -52 439 132 209 244 0 0 chr12 98219388 98219429 -45567026 + MIR SINE MIR 203 243 -19 370 307 25 40 chr12 98219496 98219698 -45566757 + L2 LINE L2 2914 3112 -160 2360 79 0 22 chr12 98219716 98220034 -45566421 - AluSx SINE Alu -1 311 1 255 374 41 0 chr12 98220090 98220213 -45566242 + L2 LINE L2 3114 3241 -31 1698 163 4 4 chr12 98220371 98220647 -45565808 - AluJb SINE Alu -36 276 1 549 214 17 3 chr12 98220698 98220827 -45565628 + MLT1J2 LTR MaLR 31 158 -288 770 226 65 0 chr12 98220872 98221040 -45565415 - MER58A DNA MER1_type 0 224 46 618 241 128 87 chr12 98221339 98221605 -45564850 + MLT1K LTR MaLR 306 582 -6 808 287 72 37 chr12 98221624 98222134 -45564321 + MLT1H LTR MaLR 21 545 -4 347 283 40 0 chr12 98222146 98222245 -45564210 + MIR SINE MIR 160 262 0 920 9 9 0 chr12 98222298 98222407 -45564048 + (TTC)n Simple_repeat Simple_repeat 2 111 0 286 368 37 7 chr12 98222423 98222559 -45563896 + L2 LINE L2 3133 3272 0 222 156 44 0 chr12 98222559 98222604 -45563851 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2031 99 3 0 chr12 98223483 98223795 -45562660 + AluSx SINE Alu 1 313 0 281 288 182 45 chr12 98223857 98223989 -45562466 - L2 LINE L2 0 3272 3123 243 91 182 106 chr12 98224623 98224689 -45561766 - MLT1J LTR MaLR -48 463 393 623 286 119 72 chr12 98224783 98225210 -45561245 + L2 LINE L2 2664 3126 -187 1661 181 7 0 chr12 98225210 98225502 -45560953 - AluJo SINE Alu -18 294 1 623 286 119 72 chr12 98225502 98225700 -45560755 + L2 LINE L2 3126 3313 0 2256 86 0 16 chr12 98226149 98226464 -45559991 - AluSg SINE Alu 0 310 1 1106 254 29 0 chr12 98226481 98226788 -45559667 - L2 LINE L2 -563 2751 2436 337 259 56 84 chr12 98226877 98227020 -45559435 + MIR SINE MIR 46 184 -78 184 229 49 33 chr12 98227068 98227129 -45559326 - MIR SINE MIR -131 77 16 1753 112 26 77 chr12 98227342 98227654 -45558801 - AluJb SINE Alu -16 296 1 289 283 177 22 chr12 98227947 98228109 -45558346 + MIR SINE MIR 23 202 -60 290 264 23 35 chr12 98228193 98228280 -45558175 + MER5A DNA MER1_type 8 93 -96 806 228 65 5 chr12 98229026 98229210 -45557245 + MIR SINE MIR 66 260 -2 1723 159 3 13 chr12 98229303 98229604 -45556851 - AluJo SINE Alu -13 299 2 1010 312 107 58 chr12 98229709 98230760 -45555695 - L2 LINE L2 -4 3268 2170 3154 216 22 9 chr12 98230960 98231604 -45554851 - MER82 DNA MER2_type -1 652 1 23 0 0 0 chr12 98232727 98232750 -45553705 + AT_rich Low_complexity Low_complexity 1 23 0 1122 83 52 87 chr12 98232757 98232986 -45553469 - L1MC2 LINE L1 -9 6335 6115 321 275 99 30 chr12 98233187 98233318 -45553137 - MIR SINE MIR -76 186 47 268 366 40 0 chr12 98233574 98233675 -45552780 + L2 LINE L2 3136 3240 -32 528 318 47 40 chr12 98234332 98234510 -45551945 + Charlie8 DNA MER1_type 1 183 -158 1824 142 70 25 chr12 98234510 98234869 -45551586 + THE1C LTR MaLR 1 375 0 528 318 47 40 chr12 98234869 98234964 -45551491 + Charlie8 DNA MER1_type 183 276 -65 2058 153 90 20 chr12 98234989 98235389 -45551066 + MSTA LTR MaLR 1 428 0 270 273 13 13 chr12 98235420 98235497 -45550958 + Charlie8 DNA MER1_type 2341 2417 0 324 228 54 11 chr12 98235685 98235777 -45550678 - MIR3 SINE MIR -21 187 92 1356 226 14 50 chr12 98235994 98236308 -45550147 - MLT1C LTR MaLR -2 465 164 2153 114 0 0 chr12 98236308 98236605 -45549850 + AluSq SINE Alu 1 297 -16 1356 226 14 50 chr12 98236605 98236652 -45549803 - MLT1C LTR MaLR -303 164 117 2356 162 72 43 chr12 98236660 98236950 -45549505 + MLT2B1 LTR ERVL 1 281 -239 2152 128 138 5 chr12 98236950 98237326 -45549129 - MSTA LTR MaLR -2 426 1 2356 162 72 43 chr12 98237326 98237492 -45548963 + MLT2B1 LTR ERVL 281 474 -46 2065 131 52 9 chr12 98237492 98237821 -45548634 - MER2 DNA MER2_type 0 344 2 2356 162 72 43 chr12 98237821 98237851 -45548604 + MLT2B1 LTR ERVL 474 502 -18 2929 182 168 27 chr12 98237866 98237987 -45548468 - Charlie1a DNA MER1_type -1695 1066 964 2274 97 3 0 chr12 98237987 98238295 -45548160 + AluSp SINE Alu 1 309 -4 2929 182 168 27 chr12 98238295 98238794 -45547661 - Charlie1a DNA MER1_type -1797 964 537 2303 97 0 3 chr12 98238794 98239104 -45547351 + AluSc SINE Alu 1 309 0 2929 182 168 27 chr12 98239104 98239343 -45547112 - Charlie1a DNA MER1_type -2224 537 84 324 259 74 0 chr12 98239390 98239471 -45546984 - Charlie1a DNA MER1_type -1367 88 2 3728 25 0 18 chr12 98239580 98240024 -45546431 + L1PA4 LINE L1 5720 6155 0 469 309 11 0 chr12 98240631 98240809 -45545646 + MER104 DNA MER2_type 1 180 0 2092 143 11 17 chr12 98240860 98241210 -45545245 - MER7A DNA MER2_type 0 346 1 379 261 0 0 chr12 98241396 98241488 -45544967 - MER69A DNA AcHobo -63 114 23 804 306 60 24 chr12 98241491 98241860 -45544595 + MLT1J LTR MaLR 130 511 0 218 317 8 83 chr12 98241935 98242055 -45544400 + MIR SINE MIR 31 141 -67 1457 212 77 40 chr12 98242404 98242833 -45543622 - LTR16A1 LTR ERVL -12 445 1 2046 120 0 0 chr12 98244059 98244351 -45542104 - AluSx SINE Alu -16 296 5 313 322 126 40 chr12 98245032 98245595 -45540860 + L2 LINE L2 2575 3253 -19 629 274 80 20 chr12 98245842 98246043 -45540412 + MIR SINE MIR 49 261 -1 2351 145 8 16 chr12 98246141 98246312 -45540143 - Tigger2 DNA MER2_type -1 2717 2546 1754 144 24 110 chr12 98246312 98246722 -45539733 - THE1C LTR MaLR 0 375 1 2351 145 8 16 chr12 98246722 98246937 -45539518 - Tigger2 DNA MER2_type -172 2546 2334 249 36 0 0 chr12 98246968 98246996 -45539459 + Tigger2 DNA MER2_type 1 28 -2690 233 97 0 0 chr12 98247017 98247048 -45539407 - Tigger2 DNA MER2_type -2686 32 2 744 206 16 74 chr12 98247379 98247568 -45538887 + MER45A DNA AcHobo 1 178 0 264 143 61 0 chr12 98247610 98247659 -45538796 + L2 LINE L2 3221 3272 0 2395 193 39 57 chr12 98247707 98248271 -45538184 - MLT2B3 LTR ERVL 0 554 1 257 89 0 0 chr12 98248668 98248713 -45537742 - L1MB4 LINE L1 -1 6179 6135 * 3052 156 33 57 chr12 98248712 98249340 -45537115 + L1MB3 LINE L1 5333 5945 -238 1559 194 43 26 chr12 98249333 98249678 -45536777 - L1MB3 LINE L1 -99 6084 5734 * 225 0 0 0 chr12 98249859 98249884 -45536571 + (A)n Simple_repeat Simple_repeat 1 25 0 2228 103 0 3 chr12 98249938 98250250 -45536205 + AluSx SINE Alu 2 312 0 582 281 122 70 chr12 98250699 98250897 -45535558 - L2 LINE L2 0 3313 3127 1661 181 7 0 chr12 98250897 98251189 -45535266 + AluJo SINE Alu 1 294 -18 582 281 122 70 chr12 98251189 98251617 -45534838 - L2 LINE L2 -186 3127 2664 243 91 182 106 chr12 98251711 98251777 -45534678 + MLT1J LTR MaLR 393 463 -48 281 288 182 45 chr12 98252411 98252543 -45533912 + L2 LINE L2 3123 3272 0 253 0 0 0 chr12 98252605 98252633 -45533822 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2030 99 3 0 chr12 98252633 98252917 -45533538 - AluSx SINE Alu -1 312 1 238 302 208 31 chr12 98254426 98254618 -45531837 - L2 LINE L2 -41 3231 3006 3041 195 29 23 chr12 98254620 98255235 -45531220 + MLT1E3 LTR MaLR 6 624 0 534 251 53 18 chr12 98255402 98255573 -45530882 + MIR SINE MIR 84 260 -2 447 335 6 37 chr12 98255631 98255795 -45530660 + MER5A DNA MER1_type 3 161 -28 2073 110 3 0 chr12 98256233 98256523 -45529932 + AluSx SINE Alu 1 291 -21 341 266 114 51 chr12 98257207 98257264 -45529191 + MIR SINE MIR 83 135 -127 2832 111 34 0 chr12 98257264 98257678 -45528777 - MSTC LTR MaLR 0 428 1 341 266 114 51 chr12 98257678 98257778 -45528677 + MIR SINE MIR 135 250 -12 606 255 166 36 chr12 98257810 98258307 -45528148 + L2 LINE L2 2707 3294 -19 655 268 142 4 chr12 98258322 98258583 -45527872 + L2 LINE L2 3011 3307 -6 562 193 298 6 chr12 98258993 98259154 -45527301 + MIR SINE MIR 21 228 -34 2304 182 45 9 chr12 98259156 98259600 -45526855 - LTR40b LTR ERVL 0 462 3 219 36 0 0 chr12 98260370 98260398 -45526057 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 415 246 115 8 chr12 98260413 98260535 -45525920 + MIR SINE MIR 49 183 -79 765 231 132 5 chr12 98261553 98261765 -45524690 + MIR SINE MIR 23 261 -1 1848 138 78 22 chr12 98262145 98262464 -45523991 + MER1B DNA MER1_type 1 337 0 270 0 0 0 chr12 98263800 98263830 -45522625 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 262 273 125 45 chr12 98263965 98264141 -45522314 - L2 LINE L2 -258 3055 2866 4827 152 43 17 chr12 98264316 98265121 -45521334 + LTR1B LTR ERV1 1 826 0 969 113 0 0 chr12 98265179 98265312 -45521143 + AluY SINE Alu 149 281 -30 180 0 0 0 chr12 98265318 98265338 -45521117 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 591 261 119 10 chr12 98265381 98265676 -45520779 + L1ME4a LINE L1 5725 6051 -70 23 68 0 0 chr12 98265824 98265868 -45520587 + AT_rich Low_complexity Low_complexity 1 44 0 1685 188 10 3 chr12 98265876 98266185 -45520270 + AluJo SINE Alu 1 311 -1 444 226 28 0 chr12 98267490 98267596 -45518859 + Charlie8 DNA MER1_type 103 211 -2206 898 296 23 19 chr12 98268031 98268291 -45518164 + MIR SINE MIR 1 261 -1 246 293 94 19 chr12 98268371 98268477 -45517978 - L2 LINE L2 0 3313 3200 2264 112 0 0 chr12 98268689 98269001 -45517454 + AluSx SINE Alu 1 312 0 324 0 0 0 chr12 98269116 98269152 -45517303 + (CA)n Simple_repeat Simple_repeat 2 37 0 1708 163 0 25 chr12 98269686 98270006 -45516449 + AluJb SINE Alu 1 312 0 720 224 7 0 chr12 98270756 98270903 -45515552 + MER3 DNA MER1_type 62 209 0 291 211 0 0 chr12 98270860 98270912 -45515543 - MER3 DNA MER1_type -119 90 39 * 292 131 16 16 chr12 98270986 98271047 -45515408 + CT-rich Low_complexity Low_complexity 4 64 0 813 231 0 0 chr12 98271047 98271194 -45515261 - FRAM SINE Alu -37 139 1 41 0 0 0 chr12 98271207 98271248 -45515207 + AT_rich Low_complexity Low_complexity 1 41 0 1316 49 0 0 chr12 98271251 98271413 -45515042 - L1MA1 LINE L1 0 6302 6141 1805 162 17 3 chr12 98271418 98271715 -45514740 - AluJb SINE Alu -11 301 1 311 245 157 29 chr12 98272035 98272137 -45514318 - MIR SINE MIR -60 148 34 23 0 0 0 chr12 98272612 98272635 -45513820 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 98272647 98272669 -45513786 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 98272709 98272732 -45513723 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 21 36 0 0 chr12 98272810 98272838 -45513617 + AT_rich Low_complexity Low_complexity 1 28 0 838 160 70 0 chr12 98272838 98272994 -45513461 - AluJb SINE Alu -26 286 120 1119 245 55 26 chr12 98273130 98273477 -45512978 - LTR33 LTR ERVL -164 357 1 470 220 0 8 chr12 98273525 98273643 -45512812 + L1MA10 LINE L1 6218 6334 0 774 50 0 0 chr12 98274685 98274784 -45511671 + (CTATG)n Simple_repeat Simple_repeat 1 99 0 192 77 0 0 chr12 98275585 98275611 -45510844 + (A)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr12 98275922 98275945 -45510510 + (T)n Simple_repeat Simple_repeat 1 23 0 697 290 31 22 chr12 98277961 98278185 -45508270 + MIR SINE MIR 29 254 -8 28 0 0 0 chr12 98278693 98278721 -45507734 + GC_rich Low_complexity Low_complexity 1 28 0 234 289 0 13 chr12 98278806 98278882 -45507573 + GA-rich Low_complexity Low_complexity 4 78 0 620 226 139 57 chr12 98279102 98279403 -45507052 - L2 LINE L2 -6 3307 2982 214 246 70 0 chr12 98279850 98279907 -45506548 - L3b LINE CR1 -229 1354 1294 28 29 0 0 chr12 98279961 98279996 -45506459 + AT_rich Low_complexity Low_complexity 1 35 0 182 217 14 0 chr12 98280191 98280260 -45506195 + (TA)n Simple_repeat Simple_repeat 2 71 0 556 196 101 6 chr12 98280281 98280439 -45506016 - L1MC4a LINE L1 -1971 5837 5665 207 0 0 0 chr12 98280439 98280462 -45505993 + (TG)n Simple_repeat Simple_repeat 1 23 0 309 197 33 0 chr12 98280462 98280523 -45505932 + L1MC4 LINE L1 6641 6703 -1339 228 109 0 0 chr12 98280527 98280573 -45505882 + LTR66 LTR ERVL 394 439 -171 317 211 70 4 chr12 98280600 98280722 -45505733 - L1MC4a LINE L1 -493 5628 5559 456 215 13 27 chr12 98280866 98281015 -45505440 + GA-rich Low_complexity Low_complexity 2 148 0 833 256 68 56 chr12 98281236 98281740 -45504715 - L1MC5 LINE L1 -183 7778 7269 838 194 99 5 chr12 98282018 98282209 -45504246 + MER3 DNA MER1_type 1 209 0 2323 89 0 0 chr12 98282843 98283146 -45503309 + AluSx SINE Alu 1 303 -9 622 274 94 15 chr12 98283181 98283382 -45503073 - MIR SINE MIR 0 262 46 492 318 174 24 chr12 98283474 98283983 -45502472 + L2 LINE L2 2717 3308 -5 1995 106 35 0 chr12 98284502 98284785 -45501670 + AluSc SINE Alu 1 293 -16 21 36 0 0 chr12 98285454 98285482 -45500973 + AT_rich Low_complexity Low_complexity 1 28 0 1040 164 0 0 chr12 98285657 98285828 -45500627 + FRAM SINE Alu 2 172 -4 870 146 14 7 chr12 98285828 98285972 -45500483 + AluSq/x SINE Alu 1 145 -167 28 0 0 0 chr12 98286078 98286106 -45500349 + GC_rich Low_complexity Low_complexity 1 28 0 223 211 0 53 chr12 98289173 98289230 -45497225 - L2 LINE L2 -8 3264 3211 382 258 120 33 chr12 98289887 98290074 -45496381 - MIR SINE MIR -51 211 17 655 318 68 13 chr12 98290928 98291164 -45495291 - MIR SINE MIR 0 262 14 278 354 100 0 chr12 98291248 98291378 -45495077 - MIR SINE MIR -22 240 98 386 281 0 0 chr12 98291673 98291755 -45494700 + L2 LINE L2 3232 3313 0 1041 171 5 31 chr12 98292083 98292276 -45494179 + MER5A DNA MER1_type 1 188 -1 622 301 75 9 chr12 98292814 98293027 -45493428 + MIR SINE MIR 15 241 -21 1152 136 0 0 chr12 98293306 98293475 -45492980 - AluSg/x SINE Alu -12 298 130 1594 166 45 24 chr12 98293529 98293818 -45492637 - AluJo SINE Alu -5 307 13 1849 185 27 9 chr12 98294559 98294894 -45491561 - MER58B DNA MER1_type 0 341 1 326 284 136 6 chr12 98294980 98295142 -45491313 - L2 LINE L2 -180 3092 2910 1085 173 5 32 chr12 98295341 98295561 -45490894 + AluJo SINE Alu 1 214 -98 261 186 0 0 chr12 98295565 98295608 -45490847 + FAM SINE Alu 125 167 -12 254 294 59 12 chr12 98295901 98295986 -45490469 - L2 LINE L2 -2 3270 3182 582 273 28 0 chr12 98296025 98296168 -45490287 - MIR SINE MIR -1 261 115 608 294 149 39 chr12 98296213 98296929 -45489526 - L2 LINE L2 -218 3054 2262 209 364 33 33 chr12 98296980 98297101 -45489354 + L2 LINE L2 3143 3263 -9 833 129 0 57 chr12 98297610 98297656 -45488799 + MLT1D LTR MaLR 34 81 -424 2217 138 9 91 chr12 98297656 98298085 -45488370 - MSTD LTR MaLR 0 396 3 833 129 0 57 chr12 98298085 98298178 -45488277 + MLT1D LTR MaLR 81 165 -340 1370 182 66 0 chr12 98298188 98298430 -45488025 + MLT1D LTR MaLR 248 505 0 235 356 58 29 chr12 98298446 98298550 -45487905 + MIR SINE MIR 132 238 -24 2428 144 34 14 chr12 98298696 98299113 -45487342 - MSTB LTR MaLR 0 426 2 254 283 65 65 chr12 98300072 98300164 -45486291 + L2 LINE L2 2666 2757 -557 297 266 92 35 chr12 98300252 98300425 -45486030 + L2 LINE L2 2909 3091 -181 333 220 44 22 chr12 98300453 98300544 -45485911 - MIR SINE MIR -24 238 146 1803 119 0 0 chr12 98300549 98300800 -45485655 - AluJb SINE Alu -28 284 34 2978 99 24 12 chr12 98300959 98301382 -45485073 + MSTA LTR MaLR 1 428 0 506 355 57 0 chr12 98301862 98302141 -45484314 + L2 LINE L2 2493 2787 -527 382 251 129 41 chr12 98302167 98302338 -45484117 + L2 LINE L2 2906 3091 -181 373 226 9 38 chr12 98302475 98302581 -45483874 + MLT1H LTR MaLR 60 162 -387 370 148 28 93 chr12 98302762 98302870 -45483585 + MLT1I LTR MaLR 309 409 0 332 298 167 0 chr12 98302871 98302985 -45483470 + L2 LINE L2 3178 3310 -3 283 404 7 20 chr12 98303005 98303156 -45483299 + L2 LINE L2 3122 3270 -2 1991 104 50 0 chr12 98303524 98303803 -45482652 - AluSx SINE Alu -19 293 1 895 297 88 19 chr12 98304294 98304759 -45481696 - L2 LINE L2 -171 3142 2640 1727 167 7 3 chr12 98304764 98305058 -45481397 + AluJb SINE Alu 1 295 -17 4299 258 124 39 chr12 98305060 98305611 -45480844 + L2 LINE L2 272 774 -2540 1707 186 0 3 chr12 98305611 98305907 -45480548 - AluJb SINE Alu -17 295 1 4299 258 124 39 chr12 98305907 98306680 -45479775 + L2 LINE L2 774 1479 -1835 2212 100 0 3 chr12 98306680 98306989 -45479466 + AluSx SINE Alu 1 308 -4 4299 258 124 39 chr12 98306989 98307500 -45478955 + L2 LINE L2 1479 2265 -1049 243 250 0 0 chr12 98307500 98307556 -45478899 + MER3 DNA MER1_type 35 90 -119 * 252 196 0 0 chr12 98307513 98307559 -45478896 - Charlie5 DNA MER1_type -2403 209 164 200 167 0 0 chr12 98308102 98308132 -45478323 + polypyrimidine Low_complexity Low_complexity 1 30 0 305 353 29 7 chr12 98309064 98309200 -45477255 + MER5A DNA MER1_type 1 139 -50 604 169 102 25 chr12 98309213 98309331 -45477124 - FLAM_C SINE Alu -6 127 1 205 232 18 54 chr12 98309331 98309387 -45477068 + MER5A DNA MER1_type 125 178 -11 253 237 412 0 chr12 98310204 98310318 -45476137 + MIR SINE MIR 99 259 -3 297 212 71 12 chr12 98310374 98310459 -45475996 + MER103 DNA DNA 42 131 -35 1841 125 43 0 chr12 98310592 98310871 -45475584 + AluSx SINE Alu 1 291 -21 2045 93 10 30 chr12 98310879 98311179 -45475276 + AluSx SINE Alu 1 294 -18 259 333 0 0 chr12 98311228 98311336 -45475119 - L1MC/D LINE L1 -1933 5875 5768 1231 183 75 4 chr12 98312391 98312659 -45473796 - Charlie4a DNA MER1_type -203 305 19 198 269 90 26 chr12 98312793 98312871 -45473584 + L2 LINE L2 3190 3272 0 189 107 0 0 chr12 98312871 98312899 -45473556 + (TGGG)n Simple_repeat Simple_repeat 4 31 0 205 386 10 10 chr12 98312904 98313005 -45473450 - MIR SINE MIR -142 120 20 484 355 201 7 chr12 98313047 98313455 -45473000 + L3 LINE CR1 976 1462 -115 1031 289 98 42 chr12 98313470 98314269 -45472186 - L2 LINE L2 0 3313 2456 475 240 80 46 chr12 98314363 98314538 -45471917 + MER20B DNA MER1_type 1 181 -602 2029 110 20 3 chr12 98314606 98314906 -45471549 + AluSg SINE Alu 1 305 -5 418 298 44 44 chr12 98315466 98315647 -45470808 - MIR SINE MIR -47 215 35 329 207 98 0 chr12 98316014 98316096 -45470359 + MER91C DNA MER1_type 24 113 -27 546 43 0 0 chr12 98316186 98316255 -45470200 + (CA)n Simple_repeat Simple_repeat 1 69 0 791 280 127 60 chr12 98317157 98317678 -45468777 - MLT1L LTR MaLR -16 599 44 673 239 77 70 chr12 98317723 98317982 -45468473 - MIR SINE MIR 0 262 2 423 56 0 0 chr12 98318049 98318103 -45468352 + (TTA)n Simple_repeat Simple_repeat 3 56 0 1441 154 12 4 chr12 98318297 98318543 -45467912 - AluJo SINE Alu -18 294 47 23 0 0 0 chr12 98320632 98320655 -45465800 + AT_rich Low_complexity Low_complexity 1 23 0 200 266 105 40 chr12 98321573 98321697 -45464758 - L3 LINE CR1 -556 1021 890 428 290 22 29 chr12 98321698 98321836 -45464619 + MIR3 SINE MIR 67 203 -5 200 310 220 0 chr12 98322159 98322259 -45464196 + L2 LINE L2 3169 3290 -23 685 276 118 9 chr12 98322900 98323128 -45463327 - MIR SINE MIR -8 254 2 313 313 31 8 chr12 98323996 98324124 -45462331 - L1ME4a LINE L1 -2 6119 5989 237 254 90 0 chr12 98324470 98324537 -45461918 - MIR3 SINE MIR -5 203 131 543 284 86 6 chr12 98324987 98325149 -45461306 - MIR SINE MIR 0 262 88 1863 148 23 0 chr12 98325698 98326001 -45460454 - AluJb SINE Alu -1 311 2 225 313 0 0 chr12 98326612 98326724 -45459731 + (TG)n Simple_repeat Simple_repeat 1 112 0 445 279 0 0 chr12 98327244 98327348 -45459107 - L2 LINE L2 -5 3308 3205 237 288 55 14 chr12 98327523 98327596 -45458859 - MER5B DNA MER1_type -99 79 4 220 207 82 0 chr12 98327658 98327729 -45458726 + MIR3 SINE MIR 108 154 -54 380 161 54 54 chr12 98328603 98328696 -45457759 + MER91B DNA MER1_type 37 129 -61 359 221 0 74 chr12 98328714 98328809 -45457646 + MER91B DNA MER1_type 91 178 -12 2320 86 0 9 chr12 98329230 98329545 -45456910 - AluSx SINE Alu 0 312 1 640 315 123 0 chr12 98330295 98330628 -45455827 - L2 LINE L2 -19 3294 2921 556 264 0 0 chr12 98330756 98330877 -45455578 - MIR SINE MIR -21 241 121 199 268 125 0 chr12 98331188 98331244 -45455211 - L2 LINE L2 -8 3264 3202 24 0 0 0 chr12 98331412 98331436 -45455019 + AT_rich Low_complexity Low_complexity 1 24 0 1697 184 66 21 chr12 98332467 98332891 -45453564 + Charlie4a DNA MER1_type 41 483 -25 231 309 175 16 chr12 98333705 98333831 -45452624 - L2 LINE L2 -3 3310 3165 397 214 27 27 chr12 98334167 98334279 -45452176 + MLT1L LTR MaLR 151 262 -353 16325 50 2 6 chr12 98335679 98338536 -45447919 - L1PA5 LINE L1 0 6154 3329 371 301 104 55 chr12 98338582 98338947 -45447508 - L2 LINE L2 -796 2518 2136 651 96 0 22 chr12 98339015 98339150 -45447305 + (TC)n Simple_repeat Simple_repeat 1 132 0 287 342 103 16 chr12 98339202 98339386 -45447069 - MLT1K LTR MaLR -271 317 118 22 0 0 0 chr12 98340584 98340606 -45445849 + AT_rich Low_complexity Low_complexity 1 22 0 185 250 0 0 chr12 98340930 98340966 -45445489 - MIR SINE MIR -6 256 221 316 295 13 0 chr12 98340997 98341075 -45445380 + L2 LINE L2 3229 3307 -6 499 359 6 0 chr12 98341522 98341678 -45444777 - L2 LINE L2 -219 3053 2897 206 356 0 0 chr12 98341721 98341780 -45444675 + L2 LINE L2 3244 3302 -11 2138 95 0 30 chr12 98342065 98342369 -45444086 - AluSx SINE Alu -17 295 1 2282 95 7 0 chr12 98343191 98343496 -45442959 - AluSx SINE Alu -3 309 3 434 271 117 3 chr12 98343954 98344163 -45442292 + MIR SINE MIR 21 257 -5 2295 122 70 19 chr12 98344205 98344575 -45441880 + MLT1B LTR MaLR 1 389 -1 689 263 101 19 chr12 98344628 98344837 -45441618 - MIR SINE MIR 0 262 37 698 271 85 0 chr12 98344838 98345015 -45441440 - MER91A DNA MER1_type -2 194 3 834 262 22 71 chr12 98348677 98348775 -45437680 - L2 LINE L2 0 3313 3212 2979 74 103 28 chr12 98348775 98349232 -45437223 + L1PA10 LINE L1 5678 6168 0 834 262 22 71 chr12 98349232 98349266 -45437189 - L2 LINE L2 -101 3212 3178 1310 192 166 43 chr12 98349266 98349682 -45436773 - MLT1C LTR MaLR 0 467 1 834 262 22 71 chr12 98349682 98349872 -45436583 - L2 LINE L2 -135 3178 3006 2009 111 0 14 chr12 98350488 98350806 -45435649 - AluSc SINE Alu 0 314 1 401 276 16 16 chr12 98351257 98351384 -45435071 - MIR SINE MIR -105 157 31 313 310 88 9 chr12 98351732 98351845 -45434610 - L2 LINE L2 -8 3264 3143 442 254 162 6 chr12 98352157 98352330 -45434125 - MIR SINE MIR 0 262 63 * 743 313 49 56 chr12 98352327 98352471 -45433984 + L2 LINE L2 2847 2990 -323 1977 103 38 3 chr12 98352471 98352762 -45433693 - AluSx SINE Alu 0 312 12 743 313 49 56 chr12 98352762 98353084 -45433371 + L2 LINE L2 2990 3310 -3 421 316 100 66 chr12 98353082 98353402 -45433053 - L2 LINE L2 -40 3232 2902 * 263 280 83 32 chr12 98353642 98353799 -45432656 - L2 LINE L2 -553 2761 2597 561 233 17 0 chr12 98354017 98354137 -45432318 - MER103 DNA DNA -43 123 2 473 264 14 29 chr12 98354348 98354488 -45431967 + MIR SINE MIR 96 233 -29 2026 169 77 29 chr12 98354500 98354878 -45431577 + MSTD LTR MaLR 1 396 0 695 290 40 13 chr12 98354912 98355136 -45431319 + MIR SINE MIR 2 231 -31 364 223 208 66 chr12 98356588 98356785 -45429670 + MIR SINE MIR 12 236 -26 22 0 0 0 chr12 98357941 98357963 -45428492 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 38 38 chr12 98358229 98358361 -45428094 - L2 LINE L2 0 3272 3141 447 258 42 0 chr12 98360549 98360669 -45425786 - L2 LINE L2 -3 3310 3186 259 277 64 57 chr12 98362384 98362525 -45423930 + L1MC4a LINE L1 5770 5911 -1897 2787 13 0 0 chr12 98362707 98363013 -45423442 + AluYa5 SINE Alu 1 306 -5 7514 48 2 2 chr12 98363041 98363422 -45423033 - L1PA6 LINE L1 -1 6153 5773 2651 61 0 0 chr12 98363422 98363733 -45422722 - AluY SINE Alu 0 311 1 7514 48 2 2 chr12 98363733 98364584 -45421871 - L1PA6 LINE L1 -380 5774 4938 1361 84 0 0 chr12 98364584 98364750 -45421705 - AluSg/x SINE Alu -15 297 132 1964 147 7 7 chr12 98364804 98365097 -45421358 - AluJo SINE Alu -15 297 5 22 35 0 0 chr12 98365215 98365244 -45421211 + AT_rich Low_complexity Low_complexity 1 29 0 2449 68 0 3 chr12 98365616 98365912 -45420543 - AluSq SINE Alu -18 295 1 214 162 0 0 chr12 98365954 98365991 -45420464 + A-rich Low_complexity Low_complexity 2 38 0 468 257 123 51 chr12 98366117 98366265 -45420190 + L1ME LINE L1 4602 4738 -1408 338 0 24 0 chr12 98366265 98366307 -45420148 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 468 257 123 51 chr12 98366307 98366547 -45419908 + L1ME LINE L1 4738 5018 -1128 2128 114 3 10 chr12 98366698 98366995 -45419460 + AluSq SINE Alu 1 295 -18 325 255 61 40 chr12 98367041 98367263 -45419192 + L1P5 LINE L1 5256 5447 -704 * 661 304 52 11 chr12 98367236 98367506 -45418949 + L1ME LINE L1 5530 5810 -311 1225 291 98 24 chr12 98367773 98368346 -45418109 + L2 LINE L2 1826 2440 -874 471 307 16 0 chr12 98368522 98368649 -45417806 + L2 LINE L2 3185 3313 0 186 254 0 0 chr12 98369413 98369480 -45416975 + (CA)n Simple_repeat Simple_repeat 2 68 0 610 314 100 41 chr12 98369676 98370478 -45415977 + L1M4 LINE L1 4497 5357 -789 417 81 0 0 chr12 98370501 98370563 -45415892 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 626 321 90 67 chr12 98371259 98371881 -45414574 - L2 LINE L2 0 3272 2638 514 204 68 53 chr12 98371841 98371973 -45414482 + L2 LINE L2 3180 3313 0 * 2208 192 3 3 chr12 98372314 98372679 -45413776 - MLT1A1 LTR MaLR 0 365 1 979 83 0 0 chr12 98373846 98373967 -45412488 + AluSq/x SINE Alu 1 121 -192 219 69 0 0 chr12 98373967 98373996 -45412459 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 409 347 35 23 chr12 98374104 98374277 -45412178 + MER5A DNA MER1_type 3 188 -1 1720 164 10 10 chr12 98375336 98375629 -45410826 + AluJo SINE Alu 1 293 -19 2331 76 3 3 chr12 98377457 98377748 -45408707 + AluSx SINE Alu 2 292 -20 204 175 25 0 chr12 98378600 98378640 -45407815 - L2 LINE L2 -1 3312 3272 5432 170 21 5 chr12 98379117 98380586 -45405869 - L1MB2 LINE L1 -1 6170 4679 2344 169 28 12 chr12 98380593 98381025 -45405430 - L1MD1 LINE L1 -9 6233 5795 194 250 0 0 chr12 98381509 98381549 -45404906 - L2 LINE L2 -11 3261 3222 185 330 104 0 chr12 98381916 98382022 -45404433 - L2 LINE L2 -278 3035 2919 2238 91 0 7 chr12 98382818 98383103 -45403352 - AluSq SINE Alu -30 283 1 186 43 0 0 chr12 98383266 98383289 -45403166 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 310 241 319 17 chr12 98383540 98383656 -45402799 - MIR SINE MIR -111 151 1 194 366 49 54 chr12 98384557 98384762 -45401693 - L3 LINE CR1 -876 701 498 1344 176 230 4 chr12 98386312 98386590 -45399865 - MER58B DNA MER1_type 0 341 1 290 332 132 43 chr12 98387406 98387641 -45398814 + L3 LINE CR1 1031 1286 -291 318 281 163 38 chr12 98390639 98390927 -45395528 - L1MC5 LINE L1 -36 7925 7602 2064 88 3 32 chr12 98441753 98442038 -45344417 - AluSx SINE Alu -35 277 1 739 198 51 17 chr12 98442090 98442267 -45344188 - MER58B DNA MER1_type -25 316 134 2058 94 37 24 chr12 98442640 98442937 -45343518 - AluY SINE Alu -10 301 1 31 0 0 0 chr12 98443116 98443147 -45343308 + AT_rich Low_complexity Low_complexity 1 31 0 2345 97 0 0 chr12 98443484 98443784 -45342671 - AluSx SINE Alu -12 300 1 1143 73 0 0 chr12 98443785 98443921 -45342534 - AluSq/x SINE Alu -177 136 1 2329 93 0 13 chr12 98444343 98444654 -45341801 - AluSc SINE Alu -2 307 1 1662 91 14 5 chr12 98445267 98445488 -45340967 + AluSg SINE Alu 1 223 -87 1790 151 14 7 chr12 98446169 98446460 -45339995 - AluSx SINE Alu -19 293 1 192 262 155 24 chr12 98446498 98446582 -45339873 + L3 LINE CR1 1179 1273 -304 2223 101 16 10 chr12 98446696 98447003 -45339452 + AluSg SINE Alu 1 309 -1 444 206 78 0 chr12 98447054 98447156 -45339299 + FLAM_C SINE Alu 16 125 -18 22 56 0 0 chr12 98448172 98448208 -45338247 + AT_rich Low_complexity Low_complexity 1 36 0 468 159 37 37 chr12 98449160 98449267 -45337188 + AluSg/x SINE Alu 205 311 -1 444 206 78 0 chr12 98449319 98449421 -45337034 + FLAM_C SINE Alu 16 125 -18 21 57 0 0 chr12 98450435 98450470 -45335985 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 98451711 98451732 -45334723 + AT_rich Low_complexity Low_complexity 1 21 0 1729 203 0 6 chr12 98451750 98452061 -45334394 + AluJb SINE Alu 1 309 -3 721 287 56 28 chr12 98452091 98452624 -45333831 + L1ME3A LINE L1 4373 4920 -1226 1816 193 63 19 chr12 98452886 98453265 -45333190 - MSTD LTR MaLR 0 396 1 507 295 71 46 chr12 98453333 98453381 -45333074 + L1ME3A LINE L1 5258 5303 -867 1691 150 68 31 chr12 98453381 98453675 -45332780 + AluJo SINE Alu 3 307 -5 507 295 71 46 chr12 98453675 98454229 -45332226 + L1ME3A LINE L1 5303 5875 -295 400 304 16 71 chr12 98454389 98454642 -45331813 + L2 LINE L2 2719 2957 -357 305 264 173 27 chr12 98454782 98454892 -45331563 + L2 LINE L2 3178 3303 -10 1691 141 54 11 chr12 98455228 98455504 -45330951 + AluSx SINE Alu 4 291 -21 22 56 0 0 chr12 98455887 98455923 -45330532 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 98457336 98457357 -45329098 + AT_rich Low_complexity Low_complexity 1 21 0 537 211 33 51 chr12 98457743 98457912 -45328543 + L1MD2 LINE L1 6195 7993 -2 180 111 0 0 chr12 98457945 98457972 -45328483 - MIR SINE MIR -66 142 116 2078 148 0 0 chr12 98458041 98458346 -45328109 - AluSx SINE Alu -7 305 1 540 283 47 33 chr12 98458505 98458717 -45327738 + MIR SINE MIR 34 248 -14 189 0 0 0 chr12 98459673 98459694 -45326761 + (A)n Simple_repeat Simple_repeat 1 21 0 309 239 8 86 chr12 98460400 98460421 -45326034 - L2 LINE L2 -1 3312 3291 2178 139 0 0 chr12 98460421 98460724 -45325731 + AluSx SINE Alu 3 305 -7 309 239 8 86 chr12 98460724 98460819 -45325636 - L2 LINE L2 -22 3291 3205 1503 124 37 0 chr12 98460819 98461036 -45325419 + AluSx SINE Alu 1 225 -87 553 227 23 8 chr12 98461116 98461244 -45325211 - LTR67 LTR ERVL 0 557 428 1619 167 13 31 chr12 98461271 98461588 -45324867 - AluJo SINE Alu -1 311 1 328 289 26 9 chr12 98461706 98461820 -45324635 - HAL1 LINE L1 -2119 388 273 2054 110 0 33 chr12 98461990 98462289 -45324166 - AluSx SINE Alu -20 292 4 1139 88 0 0 chr12 98462291 98462428 -45324027 - AluSq/x SINE Alu -175 137 1 2956 70 3 3 chr12 98462526 98462895 -45323560 - L1PA8 LINE L1 -3 6169 5801 884 167 8 0 chr12 98462966 98463098 -45323357 - FLAM_C SINE Alu 0 133 1 30 0 0 0 chr12 98463327 98463357 -45323098 + AT_rich Low_complexity Low_complexity 1 30 0 2372 191 40 15 chr12 98463357 98463712 -45322743 - L1PA16 LINE L1 -17 6149 5778 384 22 0 0 chr12 98463712 98463757 -45322698 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2372 191 40 15 chr12 98463757 98463877 -45322578 - L1PA16 LINE L1 -388 5778 5662 1770 224 15 58 chr12 98463911 98464509 -45321946 + L1MC5 LINE L1 7346 7917 -44 1626 169 21 17 chr12 98464536 98464826 -45321629 + AluJb SINE Alu 1 291 -21 193 206 10 41 chr12 98464914 98465011 -45321444 + (TA)n Simple_repeat Simple_repeat 2 95 0 311 65 22 0 chr12 98465058 98465104 -45321351 + (CA)n Simple_repeat Simple_repeat 2 48 0 263 136 0 152 chr12 98465117 98465183 -45321272 + MER21B LTR ERV1 618 673 -190 * 598 270 82 62 chr12 98465177 98465405 -45321050 + LTR33 LTR ERVL 159 398 -123 291 54 0 0 chr12 98465405 98465442 -45321013 + (CTA)n Simple_repeat Simple_repeat 3 39 0 598 270 82 62 chr12 98465442 98465569 -45320886 + LTR33 LTR ERVL 398 521 0 2230 133 0 0 chr12 98465575 98465877 -45320578 - AluSx SINE Alu -10 302 1 521 282 21 106 chr12 98466062 98466346 -45320109 - MIR SINE MIR -1 261 2 1768 166 0 7 chr12 98466404 98466693 -45319762 + AluJb SINE Alu 1 287 -25 360 0 0 0 chr12 98466696 98466736 -45319719 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 284 79 0 0 chr12 98467336 98467374 -45319081 + MADE1 DNA Mariner 28 65 -15 * 545 255 116 56 chr12 98467347 98467614 -45318841 - MLT1J LTR MaLR -24 487 205 312 167 0 33 chr12 98467600 98467660 -45318795 - MLT1J1 LTR MaLR -322 124 67 * 1109 156 0 0 chr12 98467662 98467835 -45318620 - AluSg/x SINE Alu -11 301 129 821 71 0 0 chr12 98468151 98468250 -45318205 - HY3 scRNA scRNA -2 99 1 690 136 7 100 chr12 98468348 98468488 -45317967 - FLAM_C SINE Alu -11 132 6 364 296 129 21 chr12 98468488 98468674 -45317781 + L2 LINE L2 2885 3090 -182 236 211 0 39 chr12 98468786 98468838 -45317617 + L2 LINE L2 3264 3313 0 528 193 0 0 chr12 98468916 98469004 -45317451 + FLAM_A SINE Alu 37 124 -18 2072 151 0 3 chr12 98469040 98469344 -45317111 - AluJb SINE Alu -7 305 3 2291 92 3 0 chr12 98469350 98469642 -45316813 - AluSg SINE Alu -17 293 1 805 156 0 0 chr12 98469674 98469796 -45316659 - FLAM_C SINE Alu -17 126 5 200 159 159 0 chr12 98470048 98470092 -45316363 + MIR SINE MIR 211 261 -1 829 189 0 0 chr12 98470115 98470247 -45316208 + FLAM_A SINE Alu 1 132 -1 661 242 0 0 chr12 98470341 98470469 -45315986 - FLAM_A SINE Alu -4 129 2 495 247 82 20 chr12 98470506 98470652 -45315803 + MIR SINE MIR 2 156 -106 2313 103 3 0 chr12 98470679 98470979 -45315476 - AluSx SINE Alu -11 301 1 781 143 0 50 chr12 98471014 98471154 -45315301 + FLAM_C SINE Alu 1 133 0 487 202 0 46 chr12 98471927 98472036 -45314419 + FLAM_C SINE Alu 14 117 -26 441 0 0 0 chr12 98472039 98472088 -45314367 + (TA)n Simple_repeat Simple_repeat 2 50 0 1951 147 0 3 chr12 98472170 98472456 -45313999 + AluSx SINE Alu 1 285 -27 1360 153 28 56 chr12 98472456 98472705 -45313750 + Tigger3b DNA MER2_type 16 257 -974 557 149 159 28 chr12 98472707 98472814 -45313641 + FLAM_C SINE Alu 4 124 -19 6140 113 48 11 chr12 98472818 98473787 -45312668 + Tigger3b DNA MER2_type 227 1231 0 2081 123 0 13 chr12 98473872 98474174 -45312281 + AluSx SINE Alu 1 298 -14 1278 197 0 0 chr12 98474182 98474390 -45312065 + AluJo SINE Alu 1 208 -104 990 291 95 33 chr12 98474557 98474980 -45311475 - L2 LINE L2 -1 3312 2864 2164 279 94 48 chr12 98475067 98475980 -45310475 - L2 LINE L2 -2209 1105 151 2384 86 0 3 chr12 98476229 98476530 -45309925 + AluSc SINE Alu 2 301 -8 2236 90 3 0 chr12 98476647 98476937 -45309518 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr12 98477026 98477048 -45309407 + AT_rich Low_complexity Low_complexity 1 22 0 437 88 0 0 chr12 98477739 98477796 -45308659 - Alu SINE Alu -15 297 241 1901 136 33 0 chr12 98477845 98478157 -45308298 + AluSx SINE Alu 1 321 0 1932 141 14 10 chr12 98478521 98478812 -45307643 + AluJb SINE Alu 1 292 -20 1847 178 3 0 chr12 98478812 98479105 -45307350 + AluJb SINE Alu 1 294 -18 2087 131 0 0 chr12 98479105 98479388 -45307067 + AluSx SINE Alu 1 283 -29 523 163 0 0 chr12 98479388 98479474 -45306981 + AluSg/x SINE Alu 218 303 -9 26 30 0 0 chr12 98479492 98479525 -45306930 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr12 98479900 98479940 -45306515 + AT_rich Low_complexity Low_complexity 1 40 0 573 299 72 80 chr12 98480186 98480561 -45305894 - L2 LINE L2 -1 3271 2900 2002 99 78 3 chr12 98480599 98480882 -45305573 + AluSq SINE Alu 1 304 -9 2358 68 13 3 chr12 98481057 98481365 -45305090 - AluY SINE Alu 0 311 1 2272 117 0 0 chr12 98481653 98481961 -45304494 + AluSq SINE Alu 2 309 -4 1660 181 30 13 chr12 98482666 98482969 -45303486 - AluJo SINE Alu -4 308 1 1334 108 16 5 chr12 98483293 98483478 -45302977 + AluSg/x SINE Alu 107 293 -19 1618 117 13 25 chr12 98483556 98483795 -45302660 - AluSq SINE Alu -77 236 1 1474 206 35 14 chr12 98483875 98484157 -45302298 + AluJo SINE Alu 1 288 -24 774 113 7 106 chr12 98484165 98484306 -45302149 + FLAM_C SINE Alu 1 127 -6 31 0 0 0 chr12 98484306 98484337 -45302118 + AT_rich Low_complexity Low_complexity 1 31 0 329 258 73 73 chr12 98484518 98484669 -45301786 + L2 LINE L2 3072 3222 -50 1687 191 0 10 chr12 98484736 98484873 -45301582 + AluJb SINE Alu 1 138 -174 2176 116 3 0 chr12 98484873 98485179 -45301276 + AluSq SINE Alu 1 307 0 1687 191 0 10 chr12 98485179 98485343 -45301112 + AluJb SINE Alu 138 300 -12 223 330 45 55 chr12 98485611 98485802 -45300653 + MIR SINE MIR 16 202 -35 1595 135 85 43 chr12 98486014 98486296 -45300159 - AluJo SINE Alu -18 294 1 981 124 0 7 chr12 98487003 98487140 -45299315 + AluSq/x SINE Alu 1 136 -176 1894 148 22 0 chr12 98487140 98487444 -45299011 + AluSx SINE Alu 1 310 0 2862 139 42 6 chr12 98487670 98488143 -45298312 + L1PA16 LINE L1 5675 6164 -2 328 208 39 13 chr12 98488446 98488523 -45297932 + L1ME4a LINE L1 5955 6033 -88 453 90 26 26 chr12 98488564 98488642 -45297813 + Alu SINE Alu 232 309 0 938 126 0 8 chr12 98488962 98489089 -45297366 - FLAM_C SINE Alu -7 126 1 21 89 0 0 chr12 98489185 98489241 -45297214 + AT_rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chr12 98489859 98489880 -45296575 + (TAA)n Simple_repeat Simple_repeat 1 21 0 229 322 96 0 chr12 98490118 98490233 -45296222 + MIR SINE MIR 66 191 -71 245 291 64 27 chr12 98490476 98490586 -45295869 - MIR SINE MIR -56 152 39 1774 131 57 3 chr12 98491308 98491591 -45294864 - AluJo SINE Alu -8 304 7 930 239 111 60 chr12 98491870 98492088 -45294367 + L2 LINE L2 2926 3172 -141 2202 116 3 0 chr12 98492088 98492390 -45294065 - AluSx SINE Alu -9 303 1 930 239 111 60 chr12 98492390 98492539 -45293916 + L2 LINE L2 3172 3312 -1 214 244 154 39 chr12 98493250 98493328 -45293127 - L2 LINE L2 -436 2878 2792 833 139 14 49 chr12 98493386 98493530 -45292925 + FRAM SINE Alu 8 146 -30 914 265 86 37 chr12 98493546 98493954 -45292501 - L2 LINE L2 -583 2731 2304 1227 167 5 27 chr12 98493968 98494190 -45292265 + AluJo SINE Alu 86 302 -10 235 288 47 47 chr12 98494229 98494399 -45292056 - L2 LINE L2 -1137 2177 2008 2151 116 0 55 chr12 98494518 98494847 -45291608 - AluSx SINE Alu -1 311 1 2215 91 25 0 chr12 98495958 98496244 -45290211 - AluSg SINE Alu -17 293 1 842 154 0 7 chr12 98498370 98498506 -45287949 - FLAM_C SINE Alu -8 135 1 197 208 94 38 chr12 98498577 98498630 -45287825 - L2 LINE L2 -79 3234 3179 2171 103 0 10 chr12 98498656 98498957 -45287498 - AluSg SINE Alu -12 298 1 805 156 0 0 chr12 98498989 98499111 -45287344 - FLAM_C SINE Alu -17 126 5 200 159 159 0 chr12 98499363 98499407 -45287048 + MIR SINE MIR 211 261 -1 702 197 24 0 chr12 98499430 98499557 -45286898 + FLAM_A SINE Alu 1 130 -3 238 143 41 20 chr12 98499564 98499613 -45286842 + L1ME4a LINE L1 5969 6018 -103 661 242 0 0 chr12 98499651 98499779 -45286676 - FLAM_A SINE Alu -4 129 2 495 247 82 20 chr12 98499816 98499962 -45286493 + MIR SINE MIR 2 156 -106 2306 96 3 0 chr12 98499989 98500282 -45286173 - AluSg SINE Alu -11 299 6 5308 158 51 17 chr12 98501605 98502669 -45283786 + L1MC1 LINE L1 5221 6321 -12 1833 150 57 7 chr12 98502669 98502969 -45283486 - 7SLRNA srpRNA srpRNA -5 315 1 1043 207 70 16 chr12 98502996 98503252 -45283203 + L1ME4a LINE L1 5317 5586 -578 2315 114 0 0 chr12 98503252 98503550 -45282905 - AluSx SINE Alu -14 298 1 1047 221 139 76 chr12 98503879 98504010 -45282445 + MLT1H LTR MaLR 73 194 -355 1680 128 3 100 chr12 98504010 98504211 -45282244 - AluJo SINE Alu -15 297 139 2136 112 7 0 chr12 98504211 98504498 -45281957 + AluSp SINE Alu 1 289 -24 1680 128 3 100 chr12 98504498 98504625 -45281830 - AluJo SINE Alu -173 139 1 1047 221 139 76 chr12 98504625 98504940 -45281515 + MLT1H LTR MaLR 194 547 -2 238 222 349 0 chr12 98505277 98505340 -45281115 - MER63 DNA MER1_type -125 711 1 281 212 220 34 chr12 98505433 98505551 -45280904 + MIR3 SINE MIR 65 204 -4 2197 118 7 3 chr12 98505890 98506194 -45280261 + AluSp SINE Alu 1 305 -8 2094 123 0 41 chr12 98506228 98506544 -45279911 + AluSq SINE Alu 1 303 -10 314 246 47 70 chr12 98507523 98507694 -45278761 - L2 LINE L2 -37 3276 3110 1882 132 17 17 chr12 98508012 98508299 -45278156 + AluSx SINE Alu 1 287 -25 203 120 0 60 chr12 98508439 98508489 -45277966 + (A)n Simple_repeat Simple_repeat 1 47 0 296 234 184 10 chr12 98508501 98508702 -45277753 + L1ME4a LINE L1 5689 5924 -197 1861 159 3 13 chr12 98508771 98509072 -45277383 + AluJb SINE Alu 1 298 -14 214 245 184 0 chr12 98510462 98510560 -45275895 + MIR SINE MIR 133 248 -14 941 163 198 0 chr12 98510765 98510967 -45275488 - Tigger5 DNA MER2_type -1 2322 2081 893 192 18 0 chr12 98511474 98511641 -45274814 - FAM SINE Alu -5 170 1 918 103 0 0 chr12 98511885 98512001 -45274454 - AluSg SINE Alu -194 116 1 794 141 7 22 chr12 98514127 98514262 -45272193 - FLAM_C SINE Alu 0 133 1 202 208 94 38 chr12 98514333 98514386 -45272069 - L2 LINE L2 -79 3234 3179 2247 93 0 7 chr12 98514412 98514712 -45271743 - AluSg SINE Alu -12 298 1 268 267 52 10 chr12 98515474 98515584 -45270871 + L1ME LINE L1 5542 5642 -528 267 276 46 11 chr12 98515911 98515998 -45270457 + MER58B DNA MER1_type 1 90 -251 23 0 0 0 chr12 98516001 98516024 -45270431 + AT_rich Low_complexity Low_complexity 1 23 0 544 202 28 0 chr12 98516024 98516133 -45270322 + MER58B DNA MER1_type 198 309 -32 2172 103 0 28 chr12 98517079 98517399 -45269056 + AluY SINE Alu 1 311 0 1471 179 93 0 chr12 98517640 98517953 -45268502 - MER2 DNA MER2_type -1 343 2 857 131 0 23 chr12 98518111 98518241 -45268214 - FLAM_C SINE Alu -6 127 1 203 175 0 88 chr12 98518275 98518332 -45268123 + L2 LINE L2 2911 2962 -310 549 215 99 109 chr12 98518541 98518853 -45267602 - MER102a DNA MER1_type -3 327 19 261 0 0 0 chr12 98520762 98520791 -45265664 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1870 166 7 3 chr12 98522774 98523082 -45263373 - AluJb SINE Alu -3 309 1 1183 274 86 13 chr12 98523159 98523542 -45262913 + L2 LINE L2 1159 1569 -1745 4582 52 3 0 chr12 98523550 98524129 -45262326 - LTR10C LTR ERV1 -4 587 7 2212 248 147 39 chr12 98524129 98524970 -45261485 + L2 LINE L2 1804 2552 -761 2329 76 3 0 chr12 98524970 98525258 -45261197 + AluSx SINE Alu 1 289 -23 2295 99 7 0 chr12 98525260 98525562 -45260893 + AluSp SINE Alu 3 306 -7 2212 248 147 39 chr12 98525562 98526048 -45260407 + L2 LINE L2 2552 3305 -8 1490 110 203 8 chr12 98527542 98527788 -45258667 - AluSg1 SINE Alu -15 294 1 724 143 0 50 chr12 98527823 98527963 -45258492 + FLAM_C SINE Alu 1 133 0 25 51 0 0 chr12 98528921 98528960 -45257495 + AT_rich Low_complexity Low_complexity 1 39 0 666 145 68 0 chr12 98529102 98529219 -45257236 - FLAM_C SINE Alu -18 125 1 1153 172 10 34 chr12 98529248 98529452 -45257003 + AluJo SINE Alu 84 282 -30 216 0 0 0 chr12 98529455 98529479 -45256976 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1086 166 79 7 chr12 98529760 98530038 -45256417 - MER33 DNA MER1_type -4 320 23 2255 80 35 0 chr12 98530206 98530493 -45255962 + AluSp SINE Alu 1 297 -16 195 262 60 60 chr12 98530708 98530792 -45255663 - MIR3 SINE MIR -34 174 91 223 293 30 81 chr12 98531924 98532023 -45254432 + L2 LINE L2 3086 3179 -93 386 239 387 0 chr12 98532102 98532244 -45254211 - MIR SINE MIR -32 230 34 1873 89 0 48 chr12 98532276 98532546 -45253909 - AluY SINE Alu -10 301 45 404 250 143 62 chr12 98534158 98534402 -45252053 + LTR67 LTR ERVL 271 534 -23 239 362 19 38 chr12 98534664 98534769 -45251686 + MIR SINE MIR 20 122 -86 252 292 56 14 chr12 98535713 98535785 -45250670 - MER91C DNA MER1_type -33 107 33 438 248 237 10 chr12 98536143 98536341 -45250114 - MIR SINE MIR 0 262 20 201 239 65 0 chr12 98536554 98536600 -45249855 + L2 LINE L2 3138 3186 -86 728 97 0 57 chr12 98537959 98538025 -45248430 - MER30 DNA MER1_type -113 117 60 2097 99 42 0 chr12 98538025 98538308 -45248147 - AluSx SINE Alu -17 295 1 728 97 0 57 chr12 98538308 98538365 -45248090 - MER30 DNA MER1_type -170 60 1 1829 144 47 9 chr12 98538513 98538853 -45247602 + L1MB7 LINE L1 5816 6168 -16 1824 171 0 14 chr12 98539016 98539308 -45247147 - AluJb SINE Alu -24 288 1 217 263 35 0 chr12 98539491 98539548 -45246907 + L2 LINE L2 2995 3053 -219 2398 95 0 0 chr12 98540077 98540383 -45246072 + AluSg SINE Alu 1 306 -4 544 174 41 0 chr12 98540498 98540596 -45245859 + Tigger3b DNA MER2_type 1 102 -1129 * 4934 109 86 12 chr12 98540594 98541486 -45244969 + Tigger3b DNA MER2_type 274 1231 0 910 116 148 213 chr12 98541721 98542031 -45244424 + AluJb SINE Alu 4 293 -9 2429 55 7 3 chr12 98542034 98542323 -45244132 + AluSq SINE Alu 1 290 -23 540 266 169 19 chr12 98542486 98542693 -45243762 + MIR SINE MIR 25 262 0 2127 76 4 0 chr12 98543039 98543303 -45243152 + AluSg SINE Alu 1 265 -45 2439 53 0 10 chr12 98544021 98544320 -45242135 - AluY SINE Alu -15 296 1 213 333 14 0 chr12 98545026 98545098 -45241357 + MIR3 SINE MIR 100 172 -36 2214 78 3 7 chr12 98545108 98545390 -45241065 + AluSc SINE Alu 11 291 -18 722 201 40 13 chr12 98545978 98546158 -45240297 - FRAM SINE Alu 0 177 1 2286 110 0 0 chr12 98546278 98546579 -45239876 + AluSq SINE Alu 1 301 -12 843 141 0 8 chr12 98546598 98546726 -45239729 + AluSg/x SINE Alu 166 292 -18 302 68 91 0 chr12 98546942 98546986 -45239469 + Alu SINE Alu 241 288 -14 1720 164 11 14 chr12 98547196 98547483 -45238972 - AluJb SINE Alu -26 286 1 701 183 8 8 chr12 98547708 98547839 -45238616 - FLAM_C SINE Alu -1 132 2 314 282 43 17 chr12 98547937 98548054 -45238401 + L1MC/D LINE L1 5654 5773 -2035 837 138 0 23 chr12 98548059 98548189 -45238266 + FLAM_C SINE Alu 1 127 -16 829 185 22 51 chr12 98548276 98548454 -45238001 + FAM SINE Alu 1 173 -2 1922 139 29 0 chr12 98548594 98548890 -45237565 + AluSx SINE Alu 1 304 0 647 302 163 26 chr12 98549191 98549903 -45236552 - L2 LINE L2 0 3313 2488 256 263 212 15 chr12 98550012 98550149 -45236306 + MIR SINE MIR 58 221 -41 1512 203 36 0 chr12 98550285 98550586 -45235869 + AluJo SINE Alu 1 312 0 316 217 24 24 chr12 98552028 98552111 -45234344 + FLAM SINE Alu 43 125 -8 204 40 0 0 chr12 98552111 98552136 -45234319 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 333 288 137 89 chr12 98552306 98553192 -45233263 + L1M2 LINE L1 509 1237 -5612 203 216 0 20 chr12 98553398 98553449 -45233006 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 231 204 284 11 chr12 98553903 98553991 -45232464 - MIR SINE MIR -24 238 127 451 299 69 89 chr12 98554103 98554394 -45232061 - L2 LINE L2 -73 3199 2915 216 300 58 17 chr12 98554459 98554579 -45231876 - MIR SINE MIR -27 235 111 751 221 67 78 chr12 98554825 98555211 -45231244 - MLT1G1 LTR MaLR -201 342 1 251 269 91 102 chr12 98555215 98555274 -45231181 + MER5A DNA MER1_type 1 59 -130 216 0 0 0 chr12 98555274 98555298 -45231157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 251 269 91 102 chr12 98555298 98555424 -45231031 + MER5A DNA MER1_type 59 184 -5 2022 156 0 0 chr12 98555488 98555789 -45230666 - AluSx SINE Alu -11 301 1 436 280 98 8 chr12 98555884 98556016 -45230439 + MIR SINE MIR 100 243 -19 625 193 45 131 chr12 98556362 98556714 -45229741 + L1MA9 LINE L1 5953 6274 -38 2018 153 3 0 chr12 98556729 98557036 -45229419 + AluSq SINE Alu 1 308 -5 1686 142 39 25 chr12 98557038 98557320 -45229135 - AluJb SINE Alu -26 286 1 329 45 0 0 chr12 98557396 98557440 -45229015 + L1MA3 LINE L1 6254 6297 -8 1224 174 170 12 chr12 98557775 98558034 -45228421 - AluJo SINE Alu -12 300 1 2307 109 0 10 chr12 98558049 98558360 -45228095 - AluSx SINE Alu -2 310 3 356 319 18 0 chr12 98558697 98558810 -45227645 + L2 LINE L2 3158 3272 0 2047 92 7 48 chr12 98559595 98559912 -45226543 + AluSx SINE Alu 1 305 0 234 0 0 0 chr12 98560331 98560357 -45226098 + (A)n Simple_repeat Simple_repeat 1 26 0 194 309 86 29 chr12 98560451 98560590 -45225865 - MER5A DNA MER1_type -5 184 38 * 204 329 57 14 chr12 98560475 98560615 -45225840 + MER5A DNA MER1_type 44 189 0 2388 81 0 3 chr12 98560866 98561161 -45225294 - AluSc SINE Alu -15 294 1 2605 61 0 0 chr12 98561550 98561861 -45224594 - AluY SINE Alu 0 311 1 647 140 0 0 chr12 98562023 98562123 -45224332 - AluJ/FLAM SINE Alu -211 101 2 4700 75 8 13 chr12 98562321 98562957 -45223498 - LTR10E LTR ERV1 0 633 1 1157 181 0 0 chr12 98563194 98563376 -45223079 - AluJ SINE Alu -11 301 120 855 113 0 57 chr12 98563425 98563566 -45222889 - AluJ SINE Alu -169 133 1 2243 116 7 0 chr12 98563631 98563933 -45222522 - AluSq SINE Alu -9 304 1 285 29 0 0 chr12 98564227 98564261 -45222194 + (CA)n Simple_repeat Simple_repeat 2 35 0 1556 152 95 4 chr12 98564858 98565122 -45221333 + AluJb SINE Alu 1 288 -24 265 62 0 0 chr12 98565130 98565162 -45221293 + U2 snRNA snRNA 1 32 -156 28 0 0 0 chr12 98565169 98565197 -45221258 + AT_rich Low_complexity Low_complexity 1 28 0 2303 103 3 10 chr12 98565820 98566132 -45220323 - AluSq SINE Alu -2 311 2 396 334 102 45 chr12 98566576 98566911 -45219544 - L2 LINE L2 0 3272 2919 1770 179 54 80 chr12 98567046 98567183 -45219272 + L1ME2 LINE L1 5642 5781 -383 1949 138 7 7 chr12 98567183 98567480 -45218975 + AluSx SINE Alu 1 297 -15 1770 179 54 80 chr12 98567480 98567532 -45218923 + L1ME2 LINE L1 5781 5833 -331 2027 122 21 3 chr12 98567532 98567820 -45218635 + AluSp SINE Alu 1 293 -20 1770 179 54 80 chr12 98567820 98568165 -45218290 + L1ME2 LINE L1 5833 6163 -1 221 363 44 0 chr12 98568179 98568292 -45218163 - L2 LINE L2 -567 2747 2630 2133 129 10 10 chr12 98568658 98568968 -45217487 + AluSx SINE Alu 1 310 -2 248 224 53 13 chr12 98569208 98569284 -45217171 - MIR3 SINE MIR 0 208 130 250 259 83 19 chr12 98569344 98569452 -45217003 - MIR SINE MIR -39 223 109 948 245 50 70 chr12 98569488 98569905 -45216550 + MLT1J2 LTR MaLR 38 446 -4 371 281 0 26 chr12 98569942 98570056 -45216399 - L2 LINE L2 -5 3308 3198 359 299 170 48 chr12 98570993 98571304 -45215151 - MLT1K LTR MaLR -164 424 76 180 0 0 0 chr12 98571344 98571364 -45215091 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 244 246 96 91 chr12 98572028 98572227 -45214228 - MLT1K LTR MaLR -14 574 375 200 203 0 17 chr12 98572599 98572638 -45213817 + (TAA)n Simple_repeat Simple_repeat 1 40 -18 2450 58 0 0 chr12 98572638 98572929 -45213526 + AluY SINE Alu 1 291 -20 200 203 0 17 chr12 98572929 98572948 -45213507 + (TAA)n Simple_repeat Simple_repeat 40 58 0 2093 126 14 0 chr12 98573243 98573536 -45212919 - AluSx SINE Alu -15 297 1 1554 161 86 11 chr12 98573576 98573855 -45212600 - AluJb SINE Alu -12 300 1 1552 151 13 76 chr12 98574214 98574531 -45211924 - AluJo SINE Alu -4 308 12 2181 105 31 0 chr12 98574756 98575050 -45211405 - AluSx SINE Alu -9 303 1 914 118 0 29 chr12 98575240 98575376 -45211079 - FLAM_C SINE Alu -1 132 1 1644 165 50 40 chr12 98575376 98575679 -45210776 - AluJb SINE Alu -6 306 1 1531 176 42 21 chr12 98576211 98576376 -45210079 - AluJb SINE Alu -14 298 123 2302 98 0 7 chr12 98576376 98576682 -45209773 - AluY SINE Alu -7 304 1 1531 176 42 21 chr12 98576682 98576800 -45209655 - AluJb SINE Alu -189 123 9 806 163 0 15 chr12 98577267 98577402 -45209053 - FLAM_A SINE Alu 0 133 1 184 274 41 14 chr12 98577616 98577689 -45208766 - L2 LINE L2 -256 3016 2942 2225 121 0 6 chr12 98577934 98578248 -45208207 - AluSx SINE Alu 0 312 1 207 69 0 0 chr12 98579074 98579103 -45207352 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2276 119 0 0 chr12 98579291 98579603 -45206852 - AluSx SINE Alu 0 312 1 336 174 92 92 chr12 98579751 98579958 -45206497 - L1M4 LINE L1 -744 5402 5193 186 43 0 0 chr12 98579958 98579981 -45206474 + (TATG)n Simple_repeat Simple_repeat 2 24 0 336 174 92 92 chr12 98579981 98579999 -45206456 - L1M4 LINE L1 -952 5194 5177 5536 126 33 8 chr12 98580044 98580927 -45205528 - L1PA16 LINE L1 -1 6165 5261 210 37 0 0 chr12 98581622 98581649 -45204806 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 985 212 0 0 chr12 98581665 98581844 -45204611 - FRAM SINE Alu -5 171 1 2125 147 0 0 chr12 98581856 98582163 -45204292 + AluJb SINE Alu 1 307 -5 319 258 137 16 chr12 98582184 98582308 -45204147 - L2 LINE L2 0 3313 3175 677 275 99 3 chr12 98582317 98582628 -45203827 - L2 LINE L2 -250 3063 2717 3826 197 17 26 chr12 98582635 98583509 -45202946 - L1MEc LINE L1 -1938 4277 3412 572 165 0 0 chr12 98583512 98583603 -45202852 + AluSp/q SINE Alu 193 283 -30 374 181 31 11 chr12 98583630 98583772 -45202683 - L1MEc LINE L1 -2794 3421 2271 2092 146 0 0 chr12 98584076 98584378 -45202077 + AluSx SINE Alu 3 304 -8 944 155 6 72 chr12 98584915 98585096 -45201359 + AluJo SINE Alu 18 186 -126 1352 161 137 24 chr12 98585192 98585484 -45200971 - MER61A LTR ERV1 0 343 19 2953 269 60 7 chr12 98585592 98586527 -45199928 + L2 LINE L2 2071 3063 -250 202 350 81 29 chr12 98586707 98586761 -45199694 + MIR SINE MIR 33 83 -125 270 56 0 0 chr12 98586761 98586797 -45199658 + (TG)n Simple_repeat Simple_repeat 1 36 0 202 350 81 29 chr12 98586797 98586898 -45199557 + MIR SINE MIR 83 197 -11 229 260 83 0 chr12 98588019 98588115 -45198340 + MIR SINE MIR 146 249 -13 231 36 0 0 chr12 98591260 98591288 -45195167 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 98593583 98593606 -45192849 + GC_rich Low_complexity Low_complexity 1 23 0 219 273 0 0 chr12 98593636 98593691 -45192764 + G-rich Low_complexity Low_complexity 1 55 0 239 122 20 0 chr12 98593925 98593974 -45192481 + GA-rich Low_complexity Low_complexity 1 50 0 221 371 31 0 chr12 98595983 98596080 -45190375 + MIR SINE MIR 49 148 -60 1955 111 4 0 chr12 98596330 98596609 -45189846 - AluSx SINE Alu -32 280 1 252 0 0 0 chr12 98596874 98596902 -45189553 + (CA)n Simple_repeat Simple_repeat 1 28 0 2278 108 10 0 chr12 98598530 98598836 -45187619 + AluSx SINE Alu 1 309 -3 427 194 148 0 chr12 98599373 98599481 -45186974 - MER63 DNA MER1_type -86 750 1 238 313 18 6 chr12 98599814 98599917 -45186538 + CT-rich Low_complexity Low_complexity 1 104 0 273 250 233 17 chr12 98600015 98600187 -45186268 - MIR SINE MIR -7 255 47 210 303 37 66 chr12 98600418 98600659 -45185796 - L2 LINE L2 -454 2860 2627 214 244 286 17 chr12 98600890 98601009 -45185446 + MIR3 SINE MIR 30 180 -28 315 364 97 15 chr12 98601960 98602110 -45184345 - MIR SINE MIR -20 242 69 2531 171 29 41 chr12 98602110 98602626 -45183829 - LTR54 LTR ERV1 0 510 1 315 364 97 15 chr12 98602626 98602681 -45183774 - MIR SINE MIR -193 69 20 2372 111 0 0 chr12 98602948 98603254 -45183201 - AluSq SINE Alu -7 306 1 732 229 122 57 chr12 98603363 98603747 -45182708 - MLT1I LTR MaLR 0 409 1 1185 171 64 115 chr12 98603963 98604320 -45182135 + MER2 DNA MER2_type 4 342 -2 209 179 0 0 chr12 98604950 98604989 -45181466 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 325 328 36 114 chr12 98604989 98605077 -45181378 - L2 LINE L2 0 3272 3179 1821 155 13 3 chr12 98605077 98605381 -45181074 + AluSx SINE Alu 1 307 -5 325 328 36 114 chr12 98605381 98605596 -45180859 - L2 LINE L2 -93 3179 2999 2451 77 0 0 chr12 98605596 98605896 -45180559 + AluY SINE Alu 1 300 -11 325 328 36 114 chr12 98605896 98605951 -45180504 - L2 LINE L2 -273 2999 2941 225 358 28 28 chr12 98605989 98606168 -45180287 - L2 LINE L2 -427 2887 2709 1555 203 74 7 chr12 98606249 98606654 -45179801 + Charlie4a DNA MER1_type 22 453 -55 2178 111 0 23 chr12 98606811 98607117 -45179338 - AluSx SINE Alu -13 299 1 186 71 0 0 chr12 98607742 98607770 -45178685 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2099 101 61 0 chr12 98608167 98608445 -45178010 + AluSg SINE Alu 1 295 -15 2117 78 44 3 chr12 98608714 98609008 -45177447 + AluSg SINE Alu 5 310 0 210 154 0 0 chr12 98609436 98609475 -45176980 + A-rich Low_complexity Low_complexity 1 39 0 880 262 10 28 chr12 98610499 98610789 -45175666 - L1MC4a LINE L1 -1971 5837 5553 189 0 0 0 chr12 98611112 98611133 -45175322 + (T)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr12 98611642 98611688 -45174767 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 98612017 98612039 -45174416 + AT_rich Low_complexity Low_complexity 1 22 0 14248 127 5 12 chr12 98612517 98613531 -45172924 - L1P LINE L1 -1650 4496 3477 2624 48 0 0 chr12 98613531 98613842 -45172613 - AluY SINE Alu 0 311 1 14248 127 5 12 chr12 98613842 98615242 -45171213 - L1P LINE L1 -2669 3477 2098 1194 208 82 3 chr12 98615243 98615585 -45170870 + L1ME1 LINE L1 3702 4070 -2076 2928 210 65 57 chr12 98615610 98616531 -45169924 + L1ME1 LINE L1 4272 5185 -981 1937 164 0 0 chr12 98616531 98616817 -45169638 - AluSx SINE Alu -2 310 25 2928 210 65 57 chr12 98616817 98617759 -45168696 + L1ME1 LINE L1 5185 6161 -5 186 355 39 39 chr12 98618693 98618848 -45167607 + L2 LINE L2 3032 3186 -86 281 297 99 76 chr12 98618945 98619028 -45167427 + L2 LINE L2 2898 2978 -294 1917 123 102 6 chr12 98619028 98619360 -45167095 + THE1B LTR MaLR 1 364 0 281 297 99 76 chr12 98619360 98619539 -45166916 + L2 LINE L2 2978 3166 -106 1772 174 57 17 chr12 98619565 98619874 -45166581 - MLT1A1 LTR MaLR 0 365 70 2080 137 6 10 chr12 98619874 98620187 -45166268 + AluSx SINE Alu 1 312 0 279 54 0 0 chr12 98620187 98620224 -45166231 + (TA)n Simple_repeat Simple_repeat 1 37 0 1772 174 57 17 chr12 98620224 98620264 -45166191 - MLT1A1 LTR MaLR -294 71 1 678 277 18 0 chr12 98620299 98620465 -45165990 - MIR SINE MIR -8 254 86 253 271 17 0 chr12 98620511 98620570 -45165885 + L2 LINE L2 3205 3264 -8 908 134 0 0 chr12 98620768 98620895 -45165560 + FLAM_C SINE Alu 3 129 -14 2343 94 0 0 chr12 98620933 98621231 -45165224 - AluSx SINE Alu -14 298 1 327 248 17 26 chr12 98621338 98621455 -45165000 + MLT1H LTR MaLR 47 162 -387 738 282 10 10 chr12 98621908 98622117 -45164338 - MIR SINE MIR -45 217 9 1933 131 10 0 chr12 98622148 98622438 -45164017 + AluJb SINE Alu 10 302 -10 242 248 20 59 chr12 98623556 98623597 -45162858 - MLT1K LTR MaLR -471 117 76 1731 212 67 37 chr12 98623597 98624087 -45162368 + MLT1D LTR MaLR 1 505 0 242 248 20 59 chr12 98624087 98624146 -45162309 - MLT1K LTR MaLR -512 76 21 672 321 86 5 chr12 98624336 98624557 -45161898 + MIR SINE MIR 17 255 -7 1083 181 20 5 chr12 98624588 98624787 -45161668 + MIR SINE MIR 31 232 -30 198 326 62 39 chr12 98625746 98625875 -45160580 - L2 LINE L2 -4 3268 3137 2075 160 0 0 chr12 98625914 98626220 -45160235 - AluSx SINE Alu -6 306 1 1961 156 3 0 chr12 98626299 98626594 -45159861 - AluJo SINE Alu -16 296 1 341 271 86 0 chr12 98626600 98626740 -45159715 - LTR16A1 LTR ERVL -54 403 252 1620 238 105 43 chr12 98626754 98627380 -45159075 + MER21B LTR ERV1 13 677 -186 2077 184 67 7 chr12 98627432 98627867 -45158588 - LOR1b LTR ERV1 0 461 1 3666 131 113 40 chr12 98627870 98628138 -45158317 - LOR1b-int LTR ERV1 -2 8118 7871 2074 148 0 7 chr12 98628138 98628435 -45158020 + AluSx SINE Alu 1 295 -17 3666 131 113 40 chr12 98628435 98628871 -45157584 - LOR1b-int LTR ERV1 -249 7871 7362 4157 161 4 52 chr12 98628886 98629621 -45156834 - LOR1-int LTR ERV1 -2828 3930 3238 1739 172 7 16 chr12 98629621 98629924 -45156531 - AluJo SINE Alu -2 310 11 4157 161 4 52 chr12 98629924 98630009 -45156446 - LOR1-int LTR ERV1 -3520 3238 3150 6989 130 32 55 chr12 98630019 98630446 -45156009 - LOR1-int LTR ERV1 -2921 5199 4764 230 35 0 0 chr12 98630446 98630504 -45155951 + L1PA5 LINE L1 6110 6167 0 6989 130 32 55 chr12 98630504 98631433 -45155022 - LOR1-int LTR ERV1 -3356 4764 3846 726 12 0 0 chr12 98631449 98631532 -45154923 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 1784 176 4 0 chr12 98631534 98631812 -45154643 - AluJo SINE Alu -31 281 3 2255 99 0 29 chr12 98631921 98632235 -45154220 + AluSx SINE Alu 1 305 -7 2410 86 0 3 chr12 98632345 98632647 -45153808 + AluSx SINE Alu 1 301 -11 2156 143 3 0 chr12 98632723 98633024 -45153431 + AluSx SINE Alu 5 306 -6 1441 191 15 18 chr12 98633164 98633314 -45153141 - AluJb SINE Alu -29 283 133 1956 159 0 10 chr12 98633314 98633622 -45152833 - AluSx SINE Alu -7 305 1 1441 191 15 18 chr12 98633622 98633743 -45152712 - AluJb SINE Alu -179 133 13 1525 138 76 25 chr12 98634012 98634287 -45152168 + AluJo SINE Alu 1 289 -23 2192 106 0 0 chr12 98634992 98635284 -45151171 - AluSg1 SINE Alu -17 292 1 1885 77 4 0 chr12 98635479 98635714 -45150741 - AluSp SINE Alu -77 236 1 386 160 181 0 chr12 98636001 98636095 -45150360 - MER3 DNA MER1_type -9 200 90 365 258 137 16 chr12 98637678 98637802 -45148653 - L2 LINE L2 0 3313 3175 3232 272 55 2 chr12 98637811 98638748 -45147707 - L2 LINE L2 -250 3063 2071 1221 161 137 24 chr12 98638856 98639148 -45147307 + MER61A LTR ERV1 19 343 0 985 156 6 67 chr12 98639244 98639424 -45147031 - AluJo SINE Alu -126 186 18 2032 142 3 3 chr12 98639960 98640263 -45146192 - AluSx SINE Alu -7 305 3 347 173 27 0 chr12 98640567 98640642 -45145813 + L1MEc LINE L1 2311 2387 -4009 289 185 0 0 chr12 98640644 98640709 -45145746 + L1MEc LINE L1 3357 3421 -2794 571 165 0 0 chr12 98640736 98640827 -45145628 - AluSp/q SINE Alu -30 283 193 3484 199 16 25 chr12 98640830 98641704 -45144751 + L1MEc LINE L1 3412 4277 -1938 763 273 94 1 chr12 98641711 98642022 -45144433 + L2 LINE L2 2717 3063 -250 365 258 137 16 chr12 98642031 98642155 -45144300 + L2 LINE L2 3175 3313 0 2120 147 0 0 chr12 98642176 98642482 -45143973 - AluJb SINE Alu -6 306 1 1001 212 0 0 chr12 98642494 98642673 -45143782 + FRAM SINE Alu 1 171 -5 210 37 0 0 chr12 98642689 98642716 -45143739 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 300 267 104 67 chr12 98643892 98644132 -45142323 - L1ME4a LINE L1 -8 6113 5865 359 327 73 29 chr12 98644139 98644414 -45142041 - L1ME4a LINE L1 -452 5669 5383 907 186 18 0 chr12 98644720 98644887 -45141568 + FAM SINE Alu 1 170 -5 941 163 198 0 chr12 98645394 98645596 -45140859 + Tigger5 DNA MER2_type 2081 2322 -1 211 240 93 0 chr12 98645823 98645898 -45140557 - MIR SINE MIR -48 214 133 1861 156 3 13 chr12 98647288 98647589 -45138866 - AluJo SINE Alu -14 298 1 332 233 178 10 chr12 98647658 98647860 -45138595 - L1ME4a LINE L1 -197 5924 5689 203 120 0 60 chr12 98647872 98647922 -45138533 + (T)n Simple_repeat Simple_repeat 1 47 0 1882 132 17 17 chr12 98648062 98648349 -45138106 - AluSx SINE Alu -25 287 1 314 246 47 70 chr12 98648667 98648838 -45137617 + L2 LINE L2 3110 3276 -37 2105 123 0 41 chr12 98649817 98650133 -45136322 - AluSq SINE Alu -10 303 1 2206 118 7 3 chr12 98650166 98650470 -45135985 - AluSp SINE Alu -8 305 1 293 212 220 34 chr12 98650809 98650927 -45135528 - MIR3 SINE MIR -4 204 65 914 219 139 76 chr12 98651420 98651735 -45134720 - MLT1H LTR MaLR -2 547 194 1686 127 3 103 chr12 98651735 98651863 -45134592 + AluJo SINE Alu 1 140 -172 2128 108 7 7 chr12 98651863 98652151 -45134304 - AluSp SINE Alu -25 288 1 1686 127 3 103 chr12 98652151 98652352 -45134103 + AluJo SINE Alu 140 297 -15 914 219 139 76 chr12 98652352 98652483 -45133972 - MLT1H LTR MaLR -355 194 73 2323 114 0 0 chr12 98652812 98653110 -45133345 + AluSx SINE Alu 1 298 -14 936 223 62 8 chr12 98653110 98653366 -45133089 - L1ME4a LINE L1 -578 5586 5317 1851 150 57 7 chr12 98653393 98653693 -45132762 + 7SLRNA srpRNA srpRNA 1 315 -5 4809 156 51 18 chr12 98653693 98654757 -45131698 - L1MC1 LINE L1 -12 6321 5221 2302 113 0 0 chr12 98656076 98656385 -45130070 + AluSq SINE Alu 1 309 -4 1688 181 30 13 chr12 98657090 98657393 -45129062 - AluJo SINE Alu -4 308 1 218 224 259 0 chr12 98657670 98657755 -45128700 + MER5C DNA MER1_type 206 312 -12 2268 97 0 0 chr12 98657767 98658055 -45128400 - AluSg SINE Alu -22 288 1 575 286 198 82 chr12 98658087 98658194 -45128261 - L3 LINE CR1 -103 1474 1381 1849 124 95 0 chr12 98658194 98658477 -45127978 - AluSx SINE Alu -2 310 1 575 286 198 82 chr12 98658477 98658855 -45127600 - L3 LINE CR1 -196 1381 933 210 328 65 54 chr12 98659082 98659268 -45127187 - L2 LINE L2 -620 2694 2507 2095 138 0 0 chr12 98659275 98659573 -45126882 - AluSx SINE Alu -12 300 3 2483 217 58 0 chr12 98659625 98660160 -45126295 + MER90 LTR ERV1 8 573 -2 544 254 125 43 chr12 98660161 98660393 -45126062 - L2 LINE L2 -846 2468 2218 200 328 81 51 chr12 98660436 98660451 -45126004 - L2 LINE L2 -1070 2244 2231 2030 140 7 0 chr12 98660451 98660743 -45125712 - AluJb SINE Alu -18 294 1 200 328 81 51 chr12 98660743 98661023 -45125432 - L2 LINE L2 -1083 2231 1940 1026 126 97 11 chr12 98661025 98661200 -45125255 - L1MC4 LINE L1 -1080 6962 6773 1831 159 17 0 chr12 98661312 98661607 -45124848 + AluJb SINE Alu 2 301 -11 2093 126 14 0 chr12 98661646 98661939 -45124516 + AluSx SINE Alu 1 297 -15 2450 58 0 0 chr12 98662234 98662544 -45123911 - AluY SINE Alu 0 310 1 244 246 96 91 chr12 98662955 98663154 -45123301 + MLT1K LTR MaLR 375 574 -14 180 0 0 0 chr12 98663818 98663838 -45122617 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 359 299 170 48 chr12 98663878 98664189 -45122266 + MLT1K LTR MaLR 76 424 -164 371 281 0 26 chr12 98665126 98665240 -45121215 + L2 LINE L2 3198 3308 -5 948 245 50 70 chr12 98665277 98665694 -45120761 - MLT1J2 LTR MaLR -4 446 38 250 259 83 19 chr12 98665730 98665838 -45120617 + MIR SINE MIR 109 223 -39 248 224 53 13 chr12 98665898 98665974 -45120481 + MIR3 SINE MIR 130 208 0 2133 129 10 10 chr12 98666214 98666524 -45119931 - AluSx SINE Alu -2 310 1 221 363 44 0 chr12 98666890 98667003 -45119452 + L2 LINE L2 2630 2747 -567 1770 179 54 80 chr12 98667017 98667362 -45119093 - L1ME2 LINE L1 -1 6163 5811 2027 122 21 3 chr12 98667362 98667650 -45118805 - AluSp SINE Alu -20 293 1 1770 179 54 80 chr12 98667650 98667702 -45118753 - L1ME2 LINE L1 -353 5811 5759 1949 138 7 7 chr12 98667702 98667999 -45118456 - AluSx SINE Alu -15 297 1 1770 179 54 80 chr12 98667999 98668136 -45118319 - L1ME2 LINE L1 -405 5759 5642 396 334 102 45 chr12 98668271 98668606 -45117849 + L2 LINE L2 2919 3272 0 2303 103 3 10 chr12 98669050 98669362 -45117093 + AluSq SINE Alu 2 311 -2 28 0 0 0 chr12 98669985 98670013 -45116442 + AT_rich Low_complexity Low_complexity 1 28 0 265 62 0 0 chr12 98670020 98670052 -45116403 - U2 snRNA snRNA -156 32 1 1556 152 95 4 chr12 98670060 98670324 -45116131 - AluJb SINE Alu -24 288 1 285 29 0 0 chr12 98670921 98670955 -45115500 + (TG)n Simple_repeat Simple_repeat 2 35 0 1394 143 21 13 chr12 98671263 98671340 -45115115 - Tigger5 DNA MER2_type 0 2323 2248 2009 163 0 3 chr12 98671340 98671653 -45114802 + AluJo SINE Alu 1 312 0 1394 143 21 13 chr12 98671653 98671812 -45114643 - Tigger5 DNA MER2_type -75 2248 2085 1174 181 23 32 chr12 98671802 98672023 -45114432 - Tigger5 DNA MER2_type -2085 238 20 * 407 281 125 0 chr12 98672026 98672186 -45114269 - MER69 DNA AcHobo -2173 353 174 557 118 0 0 chr12 98672208 98672284 -45114171 + AluS SINE Alu 4 79 -234 1964 137 26 7 chr12 98672292 98672417 -45114038 + AluSx SINE Alu 1 122 -190 261 0 0 0 chr12 98672417 98672446 -45114009 + (CA)n Simple_repeat Simple_repeat 2 30 0 1964 137 26 7 chr12 98672446 98672626 -45113829 + AluSx SINE Alu 122 312 0 1040 87 12 64 chr12 98672847 98672958 -45113497 + MLT2D LTR ERVL 3 103 -311 1722 181 0 30 chr12 98672958 98673262 -45113193 + AluJb SINE Alu 1 295 -17 1040 87 12 64 chr12 98673262 98673322 -45113133 + MLT2D LTR ERVL 103 165 -249 * 1121 101 0 7 chr12 98673315 98673464 -45112991 + MER1B DNA MER1_type 192 339 0 180 176 0 0 chr12 98673991 98674025 -45112430 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 125 0 0 chr12 98674025 98674073 -45112382 + MLT2C1 LTR ERVL 350 397 0 279 292 14 0 chr12 98674125 98674197 -45112258 + CT-rich Low_complexity Low_complexity 5 77 0 2102 164 3 0 chr12 98674807 98675143 -45111312 - MER1B DNA MER1_type 0 337 1 1144 246 26 26 chr12 98675306 98675593 -45110862 - MLT1C LTR MaLR -1 466 177 1906 164 10 6 chr12 98675593 98675904 -45110551 - AluJo SINE Alu 0 312 1 1144 246 26 26 chr12 98675904 98675961 -45110494 - MLT1C LTR MaLR -289 178 122 1949 137 97 51 chr12 98676163 98676268 -45110187 + MLT1B LTR MaLR 1 100 -290 2197 132 33 30 chr12 98676268 98676631 -45109824 - THE1B LTR MaLR 0 364 1 1949 137 97 51 chr12 98676631 98676898 -45109557 + MLT1B LTR MaLR 100 390 0 1222 156 15 5 chr12 98677313 98677518 -45108937 + AluJb SINE Alu 87 293 -19 332 307 100 18 chr12 98677591 98677871 -45108584 - L2 LINE L2 -556 2758 2456 266 237 17 0 chr12 98677939 98677998 -45108457 - MLT1K LTR MaLR 0 588 529 234 295 23 101 chr12 98678076 98678205 -45108250 - MLT1K LTR MaLR -193 395 277 403 211 42 63 chr12 98678250 98678392 -45108063 + MER104 DNA Tc2 38 176 -4 1816 153 4 0 chr12 98678774 98679055 -45107400 - AluSx SINE Alu -30 282 1 1762 139 144 42 chr12 98679055 98679238 -45107217 - MSTA LTR MaLR -39 389 226 2093 98 32 0 chr12 98679238 98679550 -45106905 - AluSx SINE Alu 0 312 1 1762 139 144 42 chr12 98679550 98679719 -45106736 - MSTA LTR MaLR -202 226 1 191 386 16 0 chr12 98679742 98679869 -45106586 - L2 LINE L2 -1384 1930 1802 820 178 101 0 chr12 98679974 98680143 -45106312 + MER5A DNA MER1_type 1 186 -3 293 211 300 0 chr12 98680918 98681008 -45105447 + L2 LINE L2 3196 3312 -1 825 234 29 0 chr12 98681120 98681291 -45105164 - MER45A DNA AcHobo 0 178 3 1927 122 7 46 chr12 98681397 98681700 -45104755 - AluSx SINE Alu -21 291 1 374 248 17 26 chr12 98681807 98681924 -45104531 + MLT1H LTR MaLR 47 162 -387 246 228 79 30 chr12 98682061 98682162 -45104293 + MLT1H LTR MaLR 428 533 -16 647 277 9 28 chr12 98682377 98682590 -45103865 - MIR SINE MIR -45 217 9 1986 134 7 0 chr12 98682621 98682912 -45103543 + AluJb SINE Alu 10 302 -10 232 278 0 0 chr12 98683944 98683998 -45102457 - MLT1K LTR MaLR -286 302 249 272 241 17 86 chr12 98684029 98684070 -45102385 - MLT1K LTR MaLR -471 117 75 1791 212 67 37 chr12 98684070 98684560 -45101895 + MLT1D LTR MaLR 1 505 0 272 241 17 86 chr12 98684560 98684634 -45101821 - MLT1K LTR MaLR -513 75 10 597 321 86 5 chr12 98684809 98685030 -45101425 + MIR SINE MIR 17 255 -7 1007 181 20 5 chr12 98685061 98685260 -45101195 + MIR SINE MIR 31 232 -30 2013 167 0 0 chr12 98686387 98686693 -45099762 - AluSx SINE Alu -6 306 1 1953 156 3 0 chr12 98686772 98687067 -45099388 - AluJo SINE Alu -16 296 1 389 283 83 0 chr12 98687068 98687213 -45099242 - LTR16A1 LTR ERVL -49 408 252 575 83 0 0 chr12 98687336 98687408 -45099047 + AluSg/x SINE Alu 215 286 -26 26 0 0 0 chr12 98687408 98687434 -45099021 + AT_rich Low_complexity Low_complexity 1 26 0 590 261 45 0 chr12 98687865 98688022 -45098433 + MER5B DNA MER1_type 1 164 -14 203 278 38 53 chr12 98688755 98688888 -45097567 - MIR SINE MIR -8 254 124 2443 105 0 0 chr12 98688942 98689255 -45097200 + AluSq SINE Alu 1 313 0 287 104 21 0 chr12 98689285 98689333 -45097122 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 206 171 0 0 chr12 98689346 98689381 -45097074 + MER5A DNA MER1_type 38 72 -117 1154 238 82 85 chr12 98689391 98689974 -45096481 + MER45C DNA AcHobo 1 633 -320 548 134 0 0 chr12 98689983 98690065 -45096390 - AluS SINE Alu -5 304 223 3000 93 63 101 chr12 98690075 98690707 -45095748 + LOR1-int LTR ERV1 1077 1684 -6436 1813 192 3 0 chr12 98690708 98691072 -45095383 + AluJo SINE Alu 3 367 0 369 171 0 103 chr12 98691084 98691230 -45095225 + LOR1-int LTR ERV1 3847 3977 -4143 17382 134 17 3 chr12 98691717 98692654 -45093801 + L1PA10 LINE L1 2563 3486 -2682 2676 48 0 0 chr12 98692654 98692965 -45093490 + AluY SINE Alu 1 311 0 17382 134 17 3 chr12 98692965 98695638 -45090817 + L1PA10 LINE L1 3486 6168 0 428 279 35 50 chr12 98695645 98695846 -45090609 - L1M4 LINE L1 -2430 3716 3519 208 139 28 0 chr12 98695889 98695925 -45090530 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 22 0 0 0 chr12 98696431 98696453 -45090002 + AT_rich Low_complexity Low_complexity 1 22 0 222 333 0 12 chr12 98697437 98697518 -45088937 - MIR3 SINE MIR -30 178 99 199 347 171 6 chr12 98697597 98697767 -45088688 + L2 LINE L2 3075 3272 0 843 218 192 29 chr12 98698004 98698385 -45088070 - L2 LINE L2 0 3313 2871 1735 186 16 0 chr12 98698486 98698792 -45087663 + AluJo SINE Alu 1 311 -1 1086 255 71 47 chr12 98699064 98699536 -45086919 - Charlie8 DNA MER1_type -2135 282 1 515 265 97 22 chr12 98699975 98700160 -45086295 - MLT1K LTR MaLR -39 549 351 571 261 187 15 chr12 98701016 98701219 -45085236 - MIR SINE MIR 0 262 25 330 87 0 0 chr12 98701228 98701274 -45085181 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 971 300 70 14 chr12 98701281 98701724 -45084731 - L2 LINE L2 -22 3291 2824 2097 79 8 0 chr12 98701728 98701981 -45084474 - AluSq SINE Alu -58 255 1 201 287 11 58 chr12 98702013 98702100 -45084355 - L3 LINE CR1 -103 1474 1392 1850 124 95 0 chr12 98702120 98702403 -45084052 - AluSx SINE Alu -2 310 1 446 320 262 5 chr12 98702403 98702781 -45083674 - L3 LINE CR1 -170 1407 933 210 290 16 73 chr12 98703008 98703132 -45083323 - L2 LINE L2 -620 2694 2578 2100 138 0 0 chr12 98703201 98703499 -45082956 - AluSx SINE Alu -12 300 3 2570 217 58 0 chr12 98703551 98704086 -45082369 + MER90 LTR ERV1 8 573 -2 451 254 110 48 chr12 98704087 98704296 -45082159 - L2 LINE L2 -846 2468 2247 200 328 81 51 chr12 98704362 98704377 -45082078 - L2 LINE L2 -1070 2244 2231 1923 148 10 0 chr12 98704377 98704668 -45081787 - AluJb SINE Alu -18 294 1 200 328 81 51 chr12 98704668 98704948 -45081507 - L2 LINE L2 -1083 2231 1940 1026 126 97 11 chr12 98704950 98705125 -45081330 - L1MC4 LINE L1 -1080 6962 6773 290 147 29 44 chr12 98705218 98705286 -45081169 + AluSp SINE Alu 120 186 -117 1887 152 0 0 chr12 98805293 98805570 -44980885 - AluSq SINE Alu -36 277 1 670 118 0 0 chr12 98805608 98805693 -44980762 - AluJ/FLAM SINE Alu -223 89 5 1996 214 16 9 chr12 98805694 98805905 -44980550 + L1ME1 LINE L1 5514 5722 -444 2382 120 48 31 chr12 98805905 98806263 -44980192 - THE1B LTR MaLR 0 364 1 1996 214 16 9 chr12 98806263 98806481 -44979974 + L1ME1 LINE L1 5722 5946 -220 2233 96 0 10 chr12 98806862 98807154 -44979301 + AluSq SINE Alu 19 307 -6 1943 99 55 11 chr12 98807251 98807549 -44978906 + AluSx SINE Alu 1 310 0 1289 105 0 0 chr12 98807549 98807721 -44978734 + AluSg/x SINE Alu 120 291 -21 253 233 0 0 chr12 98807721 98807764 -44978691 + L1ME2 LINE L1 5480 5522 -644 2046 204 57 24 chr12 98807780 98808274 -44978181 + L1ME2 LINE L1 5653 6162 -2 2632 55 0 0 chr12 98808586 98808897 -44977558 + AluY SINE Alu 1 311 0 1457 166 80 48 chr12 98808909 98809198 -44977257 + AluJo SINE Alu 1 298 -14 275 337 22 0 chr12 98809211 98809303 -44977152 - MIR SINE MIR -121 141 48 213 39 0 0 chr12 98809357 98809383 -44977072 + (TG)n Simple_repeat Simple_repeat 1 26 0 2087 120 0 0 chr12 98809763 98810061 -44976394 + AluSq SINE Alu 12 309 0 1470 181 92 0 chr12 98810309 98810569 -44975886 + AluJo SINE Alu 1 284 -28 6350 192 91 49 chr12 98810682 98812431 -44974024 + L1MDa LINE L1 16 1690 -4850 2334 99 0 7 chr12 98812431 98812734 -44973721 + AluSg SINE Alu 1 301 -9 6350 192 91 49 chr12 98812734 98812946 -44973509 + L1MDa LINE L1 1690 1892 -4648 1792 152 41 3 chr12 98812946 98813236 -44973219 + AluJb SINE Alu 1 301 -11 6350 192 91 49 chr12 98813236 98813282 -44973173 + L1MDa LINE L1 1892 2271 -4269 238 305 21 21 chr12 98813387 98813482 -44972973 + L1MC/D LINE L1 5670 5764 -2044 2138 121 0 3 chr12 98813570 98813867 -44972588 - AluSx SINE Alu -16 296 1 2164 132 0 3 chr12 98814414 98814717 -44971738 - AluSq SINE Alu -11 302 1 310 299 42 108 chr12 98814842 98814942 -44971513 - MIR SINE MIR -35 227 147 2385 91 0 0 chr12 98814942 98815239 -44971216 - AluSc SINE Alu -12 297 1 310 299 42 108 chr12 98815239 98815352 -44971103 - MIR SINE MIR -115 147 28 455 228 29 73 chr12 98815457 98815593 -44970862 - L2 LINE L2 0 3272 3143 455 278 74 0 chr12 98816991 98817153 -44969302 - MER102b DNA MER1_type -3 338 165 2113 198 8 3 chr12 98817203 98817566 -44968889 - MLT1A1 LTR MaLR 0 365 1 1870 121 0 11 chr12 98817597 98817862 -44968593 - AluSx SINE Alu -14 298 37 439 312 29 0 chr12 98817945 98818083 -44968372 - MIR SINE MIR 0 262 121 242 150 50 0 chr12 98818083 98818123 -44968332 + MER57A LTR ERV1 295 336 -67 198 350 12 0 chr12 98818178 98818258 -44968197 - MIR SINE MIR -71 137 57 714 241 51 46 chr12 98818407 98818602 -44967853 + MER58A DNA MER1_type 28 223 -1 2182 122 3 0 chr12 98818687 98818990 -44967465 + AluSx SINE Alu 1 304 -8 2017 155 0 0 chr12 98819001 98819297 -44967158 + AluSx SINE Alu 1 296 -16 2351 100 3 0 chr12 98819398 98819699 -44966756 + AluSx SINE Alu 1 302 -10 403 195 13 0 chr12 98820459 98820536 -44965919 + L1M4 LINE L1 4487 4564 -1582 2247 81 3 20 chr12 98820884 98821182 -44965273 - AluSc SINE Alu -16 293 1 226 210 51 138 chr12 98821512 98821650 -44964805 + MIR SINE MIR 15 140 -122 695 296 35 5 chr12 98821705 98821904 -44964551 - MIR SINE MIR -25 237 33 836 157 0 8 chr12 98821916 98822050 -44964405 + FLAM_C SINE Alu 11 143 0 22 35 0 0 chr12 98822084 98822113 -44964342 + AT_rich Low_complexity Low_complexity 1 29 0 835 184 0 0 chr12 98822222 98822347 -44964108 + FLAM_C SINE Alu 3 127 -16 227 298 64 0 chr12 98822491 98822585 -44963870 + MIR SINE MIR 148 247 -15 913 242 24 0 chr12 98823007 98823218 -44963237 + MIR SINE MIR 37 252 -10 1394 188 149 0 chr12 98823617 98823905 -44962550 + MLT1B LTR MaLR 60 390 0 2232 108 3 0 chr12 98824441 98824737 -44961718 - AluSq SINE Alu -16 297 1 2206 111 0 13 chr12 98825162 98825460 -44960995 - AluSq SINE Alu -18 295 2 1163 251 122 20 chr12 98826084 98826479 -44959976 + LTR16A LTR ERVL 16 450 0 2134 105 17 7 chr12 98826513 98826807 -44959648 - AluSx SINE Alu -15 297 1 2471 219 21 23 chr12 98826807 98826966 -44959489 - L1MDa LINE L1 -3374 3166 3008 1829 149 0 23 chr12 98826966 98827274 -44959181 + AluJb SINE Alu 1 301 -11 2471 219 21 23 chr12 98827274 98827863 -44958592 - L1MDa LINE L1 -3532 3008 2426 2394 74 7 10 chr12 98827875 98828184 -44958271 + AluY SINE Alu 1 308 -3 2123 96 44 10 chr12 98828535 98828828 -44957627 - AluSg1 SINE Alu -6 303 1 190 298 0 0 chr12 98828887 98828934 -44957521 - L2 LINE L2 -1015 2299 2253 746 286 126 19 chr12 98828973 98829291 -44957164 + LTR16A LTR ERVL 1 352 -98 626 288 58 37 chr12 98829569 98829760 -44956695 + MIR SINE MIR 34 228 -34 385 191 45 34 chr12 98829777 98829866 -44956589 - MLT1J1 LTR MaLR -3 443 354 610 246 117 23 chr12 98829909 98830080 -44956375 - MLT1J2 LTR MaLR -202 248 62 300 309 57 74 chr12 98830137 98830435 -44956020 + L2 LINE L2 2554 2846 -468 403 285 113 11 chr12 98830471 98830657 -44955798 - L2 LINE L2 -24 3289 3085 1772 168 28 0 chr12 98831235 98831526 -44954929 - AluJo SINE Alu -13 299 1 308 181 28 0 chr12 98832357 98832429 -44954026 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 2641 104 31 8 chr12 98832769 98833125 -44953330 + THE1B LTR MaLR 1 364 0 3173 132 10 18 chr12 98833399 98833586 -44952869 - L1MB3 LINE L1 0 6183 5996 2801 118 3 3 chr12 98833586 98833950 -44952505 - THE1B LTR MaLR 0 364 1 3173 132 10 18 chr12 98833950 98834263 -44952192 - L1MB3 LINE L1 -187 5996 5687 22 56 0 0 chr12 98834644 98834680 -44951775 + AT_rich Low_complexity Low_complexity 1 36 0 252 273 0 23 chr12 98834702 98834790 -44951665 - L1ME3A LINE L1 -222 5948 5863 334 309 189 13 chr12 98834852 98835085 -44951370 - L1ME3A LINE L1 -2081 5727 5454 514 345 124 0 chr12 98835094 98835303 -44951152 + MIR SINE MIR 14 248 -14 466 231 87 53 chr12 98835439 98835738 -44950717 - L1ME3A LINE L1 -878 5268 4960 1799 182 0 0 chr12 98835934 98836242 -44950213 - AluJo SINE Alu -1 311 4 320 83 0 0 chr12 98836254 98836302 -44950153 - FLAM_A SINE Alu 0 133 86 509 256 67 50 chr12 98836304 98836344 -44950111 - L1ME3A LINE L1 -1376 4770 4732 2491 245 67 17 chr12 98836344 98836940 -44949515 + MLT2E LTR ERVL 3 628 0 509 256 67 50 chr12 98836940 98837137 -44949318 - L1ME3A LINE L1 -1414 4732 4529 959 311 38 7 chr12 98837266 98837687 -44948768 - L1ME3A LINE L1 -1932 4214 3781 305 309 14 86 chr12 98837782 98837842 -44948613 - L1ME3A LINE L1 -2391 3755 3692 2292 95 3 0 chr12 98837842 98838149 -44948306 - AluSp SINE Alu 0 308 1 305 309 14 86 chr12 98838149 98838307 -44948148 - L1ME3A LINE L1 -2454 3692 3552 1514 116 42 0 chr12 98838407 98838623 -44947832 - AluSq SINE Alu -88 225 1 502 299 0 22 chr12 98839386 98839523 -44946932 - L2 LINE L2 -2 3270 3137 28 29 0 0 chr12 98839834 98839869 -44946586 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr12 98840416 98840445 -44946010 + AT_rich Low_complexity Low_complexity 1 29 0 2056 132 0 19 chr12 98840452 98840763 -44945692 + AluSx SINE Alu 1 305 -7 2540 182 58 118 chr12 98840774 98841547 -44944908 + LTR8A LTR ERV1 1 727 0 352 258 45 47 chr12 98842082 98842225 -44944230 + MIR SINE MIR 14 153 -55 356 282 59 12 chr12 98842863 98843017 -44943438 + L1ME4a LINE L1 1194 6120 -1 213 328 134 8 chr12 98843563 98843682 -44942773 - MIR SINE MIR -66 196 63 379 338 88 58 chr12 98843707 98844035 -44942420 - L2 LINE L2 -12 3260 2923 231 203 0 34 chr12 98844304 98844363 -44942092 - MLT1H LTR MaLR -387 162 106 2483 91 0 0 chr12 98844575 98844884 -44941571 - AluSg SINE Alu -1 309 1 216 64 64 0 chr12 98844911 98844958 -44941497 + (TA)n Simple_repeat Simple_repeat 1 50 0 1782 179 33 3 chr12 98847683 98847985 -44938470 - AluJo SINE Alu -1 311 1 22 0 0 0 chr12 98848017 98848039 -44938416 + AT_rich Low_complexity Low_complexity 1 22 0 234 255 118 33 chr12 98848122 98848275 -44938180 + L1M4 LINE L1 4484 4649 -1497 1575 119 46 0 chr12 98848375 98848594 -44937861 + AluSq SINE Alu 7 235 -78 313 285 53 13 chr12 98848687 98848838 -44937617 - L1 LINE L1 -2698 3448 3292 437 307 91 101 chr12 98848982 98849467 -44936988 - L3 LINE CR1 -216 1361 882 246 333 74 0 chr12 98849851 98849932 -44936523 - MIR SINE MIR -113 149 63 330 289 47 47 chr12 98850094 98850243 -44936212 - MIR SINE MIR -76 186 38 28 0 0 0 chr12 98850374 98850402 -44936053 + AT_rich Low_complexity Low_complexity 1 28 0 2233 108 7 3 chr12 98850428 98850734 -44935721 + AluSx SINE Alu 1 307 -5 2585 90 87 0 chr12 98850759 98851094 -44935361 - THE1B LTR MaLR 0 364 1 882 101 0 0 chr12 98851593 98851712 -44934743 + AluY SINE Alu 188 306 -5 1211 205 83 92 chr12 98851832 98852408 -44934047 + L1MC5 LINE L1 7347 7917 -44 530 204 0 88 chr12 98852761 98852898 -44933557 + MER91B DNA MER1_type 5 129 -61 323 245 94 19 chr12 98852907 98853013 -44933442 + MER91B DNA MER1_type 77 190 0 484 250 165 16 chr12 98853025 98853213 -44933242 + MIR SINE MIR 45 260 -2 1955 97 8 0 chr12 98854035 98854343 -44932112 - AluSp SINE Alu 0 336 27 27 0 0 0 chr12 98854704 98854731 -44931724 + AT_rich Low_complexity Low_complexity 1 27 0 1233 120 10 53 chr12 98854801 98855009 -44931446 + AluJb SINE Alu 7 205 -107 878 137 17 11 chr12 98855026 98855201 -44931254 + GA-rich Low_complexity Low_complexity 1 176 0 188 88 59 0 chr12 98855198 98855232 -44931223 + A-rich Low_complexity Low_complexity 1 36 0 * 653 188 15 30 chr12 98855237 98855370 -44931085 + FLAM_A SINE Alu 1 131 -2 29 70 0 0 chr12 98855940 98855997 -44930458 + AT_rich Low_complexity Low_complexity 1 57 0 198 379 48 16 chr12 98857282 98857406 -44929049 - L2 LINE L2 -4 3268 3141 354 235 235 0 chr12 98857441 98857560 -44928895 + MIR SINE MIR 25 171 -91 465 311 107 0 chr12 98857634 98857808 -44928647 - MIR SINE MIR 0 262 70 350 252 122 9 chr12 98857808 98857915 -44928540 + MIR SINE MIR 2 120 -142 358 304 123 14 chr12 98857921 98858328 -44928127 + LTR33A LTR ERVL 1 489 -34 506 267 8 0 chr12 98858336 98858456 -44927999 + MIR SINE MIR 113 233 -29 678 298 48 78 chr12 98858572 98858588 -44927867 - L2 LINE L2 -340 2974 2959 2737 150 19 7 chr12 98858588 98859015 -44927440 - MSTB1 LTR MaLR 0 432 1 678 298 48 78 chr12 98859015 98859559 -44926896 - L2 LINE L2 -355 2959 2431 669 312 48 4 chr12 98859571 98859821 -44926634 + MIR SINE MIR 2 262 0 411 345 13 31 chr12 98859924 98860153 -44926302 - L2 LINE L2 -1054 2260 2036 2376 107 0 0 chr12 98860658 98860967 -44925488 - AluSx SINE Alu -3 309 1 253 282 76 30 chr12 98862807 98862938 -44923517 + L2 LINE L2 2703 2839 -475 1503 148 0 8 chr12 98862948 98863198 -44923257 - MLT1B LTR MaLR -122 268 21 24 0 0 0 chr12 98863302 98863326 -44923129 + AT_rich Low_complexity Low_complexity 1 24 0 2062 113 11 0 chr12 98864657 98864940 -44921515 - AluSx SINE Alu -2 310 25 257 254 79 0 chr12 98864947 98865010 -44921445 - MIR SINE MIR -15 247 180 566 259 174 31 chr12 98865016 98865240 -44921215 + MIR SINE MIR 7 262 0 241 191 43 0 chr12 98865230 98865277 -44921178 - MIR SINE MIR -105 157 109 * 2446 107 40 97 chr12 98865386 98865808 -44920647 - MER48 LTR ERV1 0 398 1 3394 107 40 43 chr12 98865862 98866529 -44919926 + MER4D LTR ERV1 1 606 -295 2388 87 0 0 chr12 98866529 98866829 -44919626 - AluY SINE Alu -11 300 1 1066 90 0 0 chr12 98866829 98866962 -44919493 - AluY SINE Alu -177 134 2 1734 124 50 40 chr12 98866967 98867266 -44919189 + MER4D LTR ERV1 602 903 0 2370 99 0 0 chr12 98867314 98867618 -44918837 - AluSq SINE Alu -9 304 1 194 178 0 44 chr12 98867761 98867806 -44918649 + MIR SINE MIR 120 162 -100 573 200 0 0 chr12 98867967 98868067 -44918388 - FLAM_C SINE Alu -6 137 38 240 35 0 0 chr12 98868713 98868742 -44917713 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2269 113 3 0 chr12 98868967 98869269 -44917186 + AluSg SINE Alu 1 303 -7 367 339 88 69 chr12 98869393 98869546 -44916909 - L2 LINE L2 -339 2975 2826 2094 128 0 13 chr12 98869546 98869850 -44916605 + AluSx SINE Alu 1 300 -12 367 339 88 69 chr12 98869850 98870118 -44916337 - L2 LINE L2 -488 2826 2546 859 114 8 0 chr12 98870186 98870309 -44916146 - LTR23 LTR ERV1 0 437 314 338 244 128 49 chr12 98870338 98870425 -44916030 + L1ME1 LINE L1 5984 6063 -103 2054 99 39 0 chr12 98870425 98870708 -44915747 - AluSx SINE Alu -18 294 1 338 244 128 49 chr12 98870708 98870784 -44915671 + L1ME1 LINE L1 6063 6160 -6 342 311 13 53 chr12 98870804 98870955 -44915500 + MIR SINE MIR 2 146 -116 1616 171 68 14 chr12 98871098 98871391 -44915064 - AluJb SINE Alu -3 309 1 355 270 132 11 chr12 98871391 98871565 -44914890 - MIR SINE MIR -12 250 56 430 218 85 57 chr12 98871708 98871919 -44914536 - MER113 DNA MER1_type? -299 222 6 3572 155 37 9 chr12 98872036 98872678 -44913777 - MER39 LTR ERV1 -3 704 4 484 168 10 40 chr12 98873681 98873751 -44912704 + FLAM_A SINE Alu 44 112 -199 2689 106 48 14 chr12 98873751 98874165 -44912290 + L1MA2 LINE L1 5877 6304 0 484 168 10 40 chr12 98874165 98874195 -44912260 + FLAM_A SINE Alu 112 141 -170 535 112 45 0 chr12 98874512 98874601 -44911854 + HY1 scRNA scRNA 19 111 -1 260 266 0 16 chr12 98874872 98874936 -44911519 + MIR SINE MIR 21 83 -125 226 235 0 0 chr12 98875057 98875108 -44911347 + L2 LINE L2 3263 3313 0 2325 96 3 0 chr12 98875176 98875479 -44910976 + AluSq SINE Alu 1 304 -9 2278 111 0 13 chr12 98875614 98875929 -44910526 + AluSx SINE Alu 1 311 -1 1062 242 25 12 chr12 98876188 98876432 -44910023 - MIR SINE MIR -6 256 10 1871 139 7 4 chr12 98876707 98877026 -44909429 - AluSx SINE Alu 0 320 1 1573 163 33 62 chr12 98877193 98877359 -44909096 - AluJo SINE Alu -14 298 144 2187 112 0 10 chr12 98877359 98877655 -44908800 - AluSx SINE Alu -19 293 1 1573 163 33 62 chr12 98877655 98877794 -44908661 - AluJo SINE Alu -168 144 2 230 190 266 13 chr12 98878495 98878574 -44907881 + Charlie5 DNA MER1_type 23 121 -2491 1948 125 29 98 chr12 98878613 98879030 -44907425 + Charlie5 DNA MER1_type 2237 2624 0 195 231 0 19 chr12 98879065 98879117 -44907338 + MIR SINE MIR 64 114 -148 2162 113 0 0 chr12 98879118 98879423 -44907032 - AluSx SINE Alu 0 305 1 262 137 59 0 chr12 98879450 98879501 -44906954 + Alu SINE Alu 247 300 -2 2405 86 3 0 chr12 98879982 98880286 -44906169 + AluSp SINE Alu 1 305 -8 216 67 0 0 chr12 98880303 98880333 -44906122 + (GA)n Simple_repeat Simple_repeat 2 31 0 557 312 13 106 chr12 98881141 98881539 -44904916 - L2 LINE L2 -4 3268 2908 207 0 0 0 chr12 98881668 98881691 -44904764 + (T)n Simple_repeat Simple_repeat 1 23 0 4052 102 8 41 chr12 98881691 98882300 -44904155 - LTR8 LTR ERV1 -102 589 1 5403 141 13 19 chr12 98882300 98882728 -44903727 - HUERS-P1 LTR ERV1 0 6263 5834 2223 100 3 22 chr12 98882728 98883047 -44903408 - AluSp SINE Alu 0 313 1 5403 141 13 19 chr12 98883047 98883492 -44902963 - HUERS-P1 LTR ERV1 -429 5834 5396 2217 109 6 10 chr12 98883492 98883805 -44902650 - AluSx SINE Alu 0 312 1 23366 116 37 66 chr12 98883806 98886632 -44899823 - HUERS-P1 LTR ERV1 -2326 3937 1032 294 29 0 0 chr12 98886632 98886667 -44899788 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 375 23 0 0 chr12 98886666 98886710 -44899745 + (GA)n Simple_repeat Simple_repeat 2 45 0 23366 116 37 66 chr12 98886667 98887936 -44898519 - HUERS-P1 LTR ERV1 -5231 1032 1 1119 135 0 6 chr12 98887936 98888092 -44898363 - LTR8 LTR ERV1 0 691 537 2180 160 48 0 chr12 98888548 98888879 -44897576 + MER7A DNA MER2_type 2 346 0 608 295 42 5 chr12 98888980 98889173 -44897282 + MIR SINE MIR 46 245 -17 1907 105 4 0 chr12 98889991 98890268 -44896187 - AluSx SINE Alu 0 312 35 1991 150 0 0 chr12 98890734 98891028 -44895427 - AluSx SINE Alu -18 294 1 1255 175 84 96 chr12 98891333 98891631 -44894824 + LTR37A LTR ERV1 3 303 -123 2186 163 46 73 chr12 98891631 98892109 -44894346 + MLT1C LTR MaLR 1 465 -2 1255 175 84 96 chr12 98892109 98892209 -44894246 + LTR37A LTR ERV1 303 398 -28 500 139 13 0 chr12 98892209 98892288 -44894167 - MADE1 DNA Mariner 0 80 1 1255 175 84 96 chr12 98892288 98892317 -44894138 + LTR37A LTR ERV1 398 426 0 2074 126 7 3 chr12 98892680 98892981 -44893474 - AluSg SINE Alu -8 302 1 870 193 118 133 chr12 98893146 98893324 -44893131 - MER34B LTR ERV1 0 565 386 2342 93 3 10 chr12 98893324 98893635 -44892820 - AluSx SINE Alu 0 312 4 870 193 118 133 chr12 98893635 98894026 -44892429 - MER34B LTR ERV1 -179 386 5 279 207 12 37 chr12 98894056 98894138 -44892317 + MER31-int LTR ERV1 1690 1769 -3102 195 69 0 0 chr12 98894196 98894225 -44892230 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1387 84 0 0 chr12 98894225 98894391 -44892064 - L1PA3 LINE L1 -10 6145 5980 325 220 33 80 chr12 98894391 98894541 -44891914 + MER31-int LTR ERV1 1173 1315 -3621 262 259 0 35 chr12 98894584 98894669 -44891786 + MER31-int LTR ERV1 1553 1634 -3489 274 73 36 36 chr12 98894689 98894744 -44891711 + MER31-int LTR ERV1 1391 1445 -3491 371 296 60 37 chr12 98894988 98895204 -44891251 + MER31-int LTR ERV1 2480 2700 -2236 2159 112 3 20 chr12 98895219 98895548 -44890907 - AluSx SINE Alu 0 312 1 256 261 14 87 chr12 98895766 98895904 -44890551 + MER31-int LTR ERV1 4224 4351 -1980 868 165 0 15 chr12 98896037 98896170 -44890285 - FLAM_C SINE Alu -2 131 1 2103 128 7 7 chr12 98896487 98896793 -44889662 - AluSx SINE Alu -6 306 1 2275 102 0 6 chr12 98896827 98897142 -44889313 - AluSq SINE Alu 0 313 1 923 207 40 153 chr12 98897225 98897695 -44888760 + MER31-int LTR ERV1 3118 4841 -1458 1005 241 11 88 chr12 98897752 98898104 -44888351 + MER31-int LTR ERV1 3538 3862 -1074 806 143 0 93 chr12 98898107 98898247 -44888208 + FLAM_A SINE Alu 4 130 -3 312 110 27 14 chr12 98898519 98898592 -44887863 + T-rich Low_complexity Low_complexity 2 75 0 644 183 0 0 chr12 98898614 98898718 -44887737 - U13 snRNA snRNA 0 104 1 966 265 34 23 chr12 98899121 98899385 -44887070 + MLT1L LTR MaLR 349 615 0 207 287 96 0 chr12 98899386 98899480 -44886975 - MIR SINE MIR -61 201 99 1739 166 3 21 chr12 98899482 98899771 -44886684 + AluJo SINE Alu 1 284 -28 10614 197 19 44 chr12 98899781 98899990 -44886465 + L1MB3 LINE L1 2562 2775 -3399 2309 101 3 0 chr12 98899990 98900288 -44886167 + AluSp SINE Alu 1 299 -14 10614 197 19 44 chr12 98900288 98900410 -44886045 + L1MB3 LINE L1 2775 2898 -3276 801 165 0 30 chr12 98900410 98900543 -44885912 + FLAM_C SINE Alu 1 129 -14 10614 197 19 44 chr12 98900543 98901525 -44884930 + L1MB3 LINE L1 2898 3903 -2271 1619 201 23 33 chr12 98901525 98901663 -44884792 + AluJo SINE Alu 1 139 -163 1839 110 13 68 chr12 98901663 98901812 -44884643 + AluSq SINE Alu 1 157 -156 2077 131 3 3 chr12 98901812 98902109 -44884346 + AluSq SINE Alu 1 297 -16 1839 110 13 68 chr12 98902109 98902294 -44884161 + AluSq SINE Alu 157 313 0 1619 201 23 33 chr12 98902294 98902458 -44883997 + AluJo SINE Alu 139 300 -2 10614 197 19 44 chr12 98902458 98902716 -44883739 + L1MB3 LINE L1 3903 4166 -2008 2178 128 0 3 chr12 98902716 98903021 -44883434 + AluSx SINE Alu 1 304 -8 10614 197 19 44 chr12 98903021 98903471 -44882984 + L1MB3 LINE L1 4166 4626 -1548 2329 99 0 0 chr12 98903471 98903774 -44882681 + AluSx SINE Alu 1 303 -9 10614 197 19 44 chr12 98903774 98904615 -44881840 + L1MB3 LINE L1 4626 5486 -688 1873 164 0 19 chr12 98904615 98904932 -44881523 + AluJb SINE Alu 1 311 -1 10614 197 19 44 chr12 98904932 98905153 -44881302 + L1MB3 LINE L1 5486 5711 -463 484 75 15 0 chr12 98905153 98905220 -44881235 - MADE1 DNA Mariner 0 80 13 10614 197 19 44 chr12 98905220 98905668 -44880787 + L1MB3 LINE L1 5711 6009 -165 948 167 4 106 chr12 98905671 98905846 -44880609 - AluJb SINE Alu -8 304 159 935 130 31 6 chr12 98905846 98906007 -44880448 + L1MB3 LINE L1 6018 6182 -1 948 167 4 106 chr12 98906007 98906076 -44880379 - AluJb SINE Alu -153 159 85 296 218 0 0 chr12 98906076 98906131 -44880324 - AluSg/x SINE Alu -52 248 194 385 313 184 0 chr12 98906148 98906327 -44880128 + MIR SINE MIR 1 212 -50 2242 104 13 0 chr12 98906415 98906750 -44879705 - AluSx SINE Alu 0 339 1 222 118 0 0 chr12 98907086 98907120 -44879335 + (T)n Simple_repeat Simple_repeat 1 34 0 287 305 195 0 chr12 98907645 98907763 -44878692 - MIR SINE MIR -20 242 102 1711 218 39 26 chr12 98907899 98908357 -44878098 + MLT1C LTR MaLR 2 465 -2 1970 125 4 4 chr12 98909260 98909540 -44876915 + AluSx SINE Alu 1 280 -32 216 397 43 0 chr12 98909540 98909656 -44876799 + L2 LINE L2 3149 3269 -3 783 294 85 33 chr12 98909665 98910090 -44876365 + L1MC/D LINE L1 5279 5725 -2083 2272 114 3 0 chr12 98910662 98910970 -44875485 - AluSx SINE Alu -3 309 1 992 192 16 6 chr12 98912287 98912469 -44873986 - MER5A DNA MER1_type -1 188 5 383 261 84 8 chr12 98912470 98912589 -44873866 + MIR3 SINE MIR 9 136 -72 804 284 72 6 chr12 98912602 98912852 -44873603 + MIR SINE MIR 2 261 -1 196 281 37 37 chr12 98912865 98912947 -44873508 + MIR SINE MIR 175 256 -6 446 210 34 42 chr12 98913608 98913727 -44872728 - MER103 DNA DNA -46 120 3 1215 209 53 108 chr12 98913949 98914444 -44872011 - MER110A LTR ERV1 0 468 44 255 114 0 0 chr12 98914452 98914496 -44871959 + (TG)n Simple_repeat Simple_repeat 2 45 0 224 317 73 41 chr12 98915666 98915789 -44870666 - L2 LINE L2 -5 3267 3141 2007 177 164 42 chr12 98915880 98916000 -44870455 - MLT1F LTR MaLR 0 542 438 2739 118 6 3 chr12 98916000 98916363 -44870092 + THE1B LTR MaLR 1 364 0 2007 177 164 42 chr12 98916363 98916723 -44869732 - MLT1F LTR MaLR -104 438 3 29 28 0 0 chr12 98916771 98916807 -44869648 + AT_rich Low_complexity Low_complexity 1 36 0 215 254 17 0 chr12 98916870 98916929 -44869526 - MIR SINE MIR 0 262 203 310 295 35 44 chr12 98916941 98917094 -44869361 + MIR SINE MIR 19 170 -90 5363 94 4 21 chr12 98917094 98917537 -44868918 + LTR8 LTR ERV1 1 429 -262 2227 130 0 0 chr12 98917537 98917836 -44868619 - AluSx SINE Alu -13 299 1 5363 94 4 21 chr12 98917836 98918095 -44868360 + LTR8 LTR ERV1 429 691 0 310 295 35 44 chr12 98918095 98918118 -44868337 + MIR SINE MIR 170 192 -68 233 95 0 24 chr12 98918177 98918219 -44868236 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1362 183 7 89 chr12 98919122 98919197 -44867258 + MER21B LTR ERV1 1 81 -782 2158 107 18 0 chr12 98919197 98919477 -44866978 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr12 98919477 98919499 -44866956 + (CTAA)n Simple_repeat Simple_repeat 3 24 0 1362 183 7 89 chr12 98919499 98919938 -44866517 + MER21B LTR ERV1 79 453 -410 2401 190 66 92 chr12 98919961 98920788 -44865667 - LTR1B LTR ERV1 -21 999 1 1546 199 52 62 chr12 98920788 98921188 -44865267 + MER21B LTR ERV1 465 860 -3 2028 130 3 10 chr12 98921698 98922042 -44864413 - AluSx SINE Alu 0 312 1 553 297 139 0 chr12 98922182 98922391 -44864064 + MIR SINE MIR 9 246 -16 2239 89 16 26 chr12 98922410 98922713 -44863742 - AluSg SINE Alu -10 300 1 209 247 14 41 chr12 98923487 98923560 -44862895 + GA-rich Low_complexity Low_complexity 2 72 0 2097 135 7 0 chr12 98923610 98923906 -44862549 + AluJb SINE Alu 1 298 -14 520 206 93 67 chr12 98924643 98924724 -44861731 + Charlie8 DNA MER1_type 2 79 -251 2171 107 0 36 chr12 98924724 98924889 -44861566 - AluSx SINE Alu -14 298 148 2256 111 0 0 chr12 98924889 98925187 -44861268 - AluSx SINE Alu -14 298 1 2171 107 0 36 chr12 98925187 98925330 -44861125 - AluSx SINE Alu -164 148 1 520 206 93 67 chr12 98925330 98925442 -44861013 + Charlie8 DNA MER1_type 79 200 -130 863 150 97 65 chr12 98925933 98926180 -44860275 + MER112 DNA MER1_type 2 256 0 3005 172 21 36 chr12 98926361 98926919 -44859536 + MER44D DNA MER2_type 1 605 0 38 0 0 0 chr12 98927158 98927196 -44859259 + AT_rich Low_complexity Low_complexity 1 38 0 196 102 41 0 chr12 98927196 98927245 -44859210 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 667 244 85 77 chr12 98927246 98928018 -44858437 + L1ME3 LINE L1 801 1632 -4678 476 282 75 24 chr12 98928365 98928737 -44857718 + L1ME3 LINE L1 2214 2604 -3525 409 290 108 35 chr12 98928882 98929462 -44856993 + L1ME3 LINE L1 4956 5585 -560 318 184 156 42 chr12 98929551 98929647 -44856808 + MLT1J LTR MaLR 100 262 -344 239 284 34 11 chr12 98929644 98929732 -44856723 + MLT1L LTR MaLR 305 394 -221 * 606 312 103 7 chr12 98929851 98930143 -44856312 + L1ME3 LINE L1 5596 5915 -230 549 209 19 0 chr12 98930182 98930340 -44856115 + (TA)n Simple_repeat Simple_repeat 2 162 0 3168 132 0 0 chr12 98930562 98931010 -44855445 + L1PB3 LINE L1 5707 6154 0 238 303 97 41 chr12 98931050 98931195 -44855260 - L2 LINE L2 -641 2673 2521 1754 153 69 47 chr12 98931249 98931861 -44854594 - L1MB3 LINE L1 0 6183 5611 1062 115 115 48 chr12 98931864 98932072 -44854383 + MER50 LTR ERV1 1 222 -512 1477 141 98 8 chr12 98932074 98932329 -44854126 + MER50 LTR ERV1 434 711 -23 751 226 0 0 chr12 98932799 98932953 -44853502 + FLAM_C SINE Alu 1 154 0 323 267 141 34 chr12 98933125 98933387 -44853068 - L1ME4a LINE L1 -170 5951 5662 457 218 13 0 chr12 98933409 98933487 -44852968 + FLAM_C SINE Alu 37 115 -28 384 22 0 0 chr12 98933487 98933532 -44852923 + (TAA)n Simple_repeat Simple_repeat 3 47 0 250 253 91 52 chr12 98933594 98933748 -44852707 - HAL1b LINE L1 -1 1347 1188 2399 164 46 37 chr12 98934179 98934636 -44851819 - LOR1b LTR ERV1 0 461 1 503 306 73 16 chr12 98934711 98934959 -44851496 + MIR SINE MIR 1 262 0 2758 110 266 2 chr12 98935046 98935538 -44850917 - LTR29 LTR ERV1 0 622 1 202 184 31 51 chr12 98936668 98936766 -44849689 + (TTATA)n Simple_repeat Simple_repeat 4 99 0 1665 180 41 0 chr12 98937121 98937416 -44849039 + AluJb SINE Alu 3 309 -3 623 187 113 1 chr12 98937972 98938170 -44848285 + L1M4 LINE L1 5262 5479 -685 2243 112 3 3 chr12 98938189 98938494 -44847961 + AluSq SINE Alu 1 305 -8 384 302 65 12 chr12 98938609 98938778 -44847677 + L1ME1 LINE L1 5987 6164 -2 234 291 18 18 chr12 98938758 98938868 -44847587 + L1M4 LINE L1 3146 3255 -2891 * 221 382 24 0 chr12 98938962 98939085 -44847370 + L3b LINE CR1 1132 1257 -326 13375 190 70 12 chr12 98939209 98944497 -44841958 + L1PB1 LINE L1 29 5621 -1241 3035 53 8 0 chr12 98944512 98944868 -44841587 - L1PA5 LINE L1 -4 6150 5792 * 6209 102 12 20 chr12 98944866 98945756 -44840699 + L1PA5 LINE L1 5605 6489 -378 252 0 0 0 chr12 98945756 98945784 -44840671 + (TG)n Simple_repeat Simple_repeat 2 29 0 6209 102 12 20 chr12 98945784 98946158 -44840297 + L1PB1 LINE L1 6489 6864 -3 579 225 47 18 chr12 98946426 98946595 -44839860 - MIR SINE MIR -3 259 86 273 173 86 25 chr12 98946855 98946936 -44839519 - AluJo SINE Alu -9 293 208 308 214 96 19 chr12 98947235 98947340 -44839115 - MLT1J LTR MaLR -319 131 21 2462 169 57 0 chr12 98947364 98947767 -44838688 - MSTB LTR MaLR 0 426 1 1941 154 0 26 chr12 98947827 98948002 -44838453 - AluJb SINE Alu -8 304 139 1874 122 80 0 chr12 98948002 98948289 -44838166 - AluSq SINE Alu -3 310 1 1941 154 0 26 chr12 98948289 98948425 -44838030 - AluJb SINE Alu -173 139 1 497 307 16 0 chr12 98948429 98948618 -44837837 - L1M4 LINE L1 -1014 5132 4941 325 291 133 0 chr12 98948677 98948835 -44837620 - HAL1 LINE L1 -1160 1347 1169 300 27 0 0 chr12 98948838 98948875 -44837580 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1495 156 4 4 chr12 98948878 98949109 -44837346 - AluJo SINE Alu -81 231 1 345 100 0 0 chr12 98949667 98949717 -44836738 + (TG)n Simple_repeat Simple_repeat 1 50 0 269 238 163 75 chr12 98949725 98950007 -44836448 - HAL1 LINE L1 -1384 1123 817 2501 107 21 47 chr12 98950195 98950580 -44835875 - THE1C LTR MaLR 0 375 1 259 216 135 14 chr12 98950580 98950654 -44835801 - HAL1 LINE L1 -1811 696 614 1008 218 0 0 chr12 98950776 98950969 -44835486 - MIR SINE MIR -24 238 46 328 267 152 0 chr12 98951060 98951165 -44835290 + L2 LINE L2 3193 3313 0 892 105 13 0 chr12 98952195 98952347 -44834108 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 305 244 111 59 chr12 98952347 98952482 -44833973 - L2 LINE L2 -13 3300 3159 298 289 61 18 chr12 98952499 98952527 -44833928 + MER94 DNA DNA 1 26 -108 1955 141 7 0 chr12 98952527 98952817 -44833638 - AluJb SINE Alu -20 292 1 298 289 61 18 chr12 98952817 98952902 -44833553 + MER94 DNA DNA 26 119 -15 275 299 175 26 chr12 98952902 98953170 -44833285 - L2 LINE L2 -164 3149 2842 210 37 0 0 chr12 98953342 98953369 -44833086 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 473 186 171 71 chr12 98953427 98953637 -44832818 + L1MC5 LINE L1 7682 7912 -49 1116 276 82 16 chr12 98953671 98954095 -44832360 - L2 LINE L2 -614 2700 2249 472 311 105 21 chr12 98954532 98954770 -44831685 - L2 LINE L2 -1190 2124 1867 1939 163 10 18 chr12 98954771 98955182 -44831273 + MER65C LTR ERV1 2 461 0 391 268 106 57 chr12 98955184 98955334 -44831121 - L2 LINE L2 -1446 1868 1699 2157 113 0 0 chr12 98955334 98955651 -44830804 - AluSx SINE Alu 0 317 1 391 268 106 57 chr12 98955651 98955745 -44830710 - L2 LINE L2 -1615 1699 1611 273 308 38 3 chr12 98956733 98956896 -44829559 + MIR SINE MIR 17 230 -32 451 256 122 13 chr12 98957116 98957272 -44829183 + MIR SINE MIR 76 248 -14 1501 214 30 85 chr12 98957683 98958156 -44828299 + L1MC4 LINE L1 7442 7939 -103 198 71 0 0 chr12 98958156 98958184 -44828271 + (CA)n Simple_repeat Simple_repeat 2 29 0 839 229 6 0 chr12 98958184 98958341 -44828114 + FAM SINE Alu 1 158 -17 1501 214 30 85 chr12 98958341 98958502 -44827953 + L1MC4 LINE L1 7937 8042 0 24 0 0 0 chr12 98959353 98959377 -44827078 + AT_rich Low_complexity Low_complexity 1 24 0 189 250 0 0 chr12 98959429 98959473 -44826982 - L2 LINE L2 0 3313 3270 2916 144 30 2 chr12 98959916 98960352 -44826103 - MER83 LTR ERV1 0 448 1 402 348 14 0 chr12 98960358 98960499 -44825956 + MIR SINE MIR 13 155 -107 2168 150 48 20 chr12 98960509 98960863 -44825592 + THE1B LTR MaLR 1 364 0 240 376 9 0 chr12 98961168 98961277 -44825178 - Tigger8 DNA MER2_type -555 111 2 810 188 47 13 chr12 98961372 98961521 -44824934 - AluJo SINE Alu -157 155 2 773 183 15 0 chr12 98961600 98961764 -44824691 + MLT1J LTR MaLR 1 130 -320 304 253 44 11 chr12 98961922 98962013 -44824442 + MLT1J LTR MaLR 418 511 0 262 178 0 0 chr12 98963572 98963617 -44822838 - U3 snRNA snRNA -172 45 1 240 35 0 0 chr12 98963622 98963651 -44822804 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 280 415 0 8 chr12 98963663 98963786 -44822669 + MER5A DNA MER1_type 68 189 0 457 269 154 63 chr12 98963943 98964293 -44822162 + L1ME LINE L1 5367 5748 -373 3174 169 69 12 chr12 98964299 98964917 -44821538 - MER39 LTR ERV1 -2 705 1 195 132 0 0 chr12 98965003 98965023 -44821432 + (TAA)n Simple_repeat Simple_repeat 1 23 -15 1834 153 11 14 chr12 98965023 98965310 -44821145 + AluJb SINE Alu 1 286 -26 195 132 0 0 chr12 98965310 98965327 -44821128 + (TAA)n Simple_repeat Simple_repeat 22 38 0 262 222 127 0 chr12 98965335 98965398 -44821057 - MIR SINE MIR 0 262 192 237 280 68 42 chr12 98966521 98966639 -44819816 + L2 LINE L2 2933 3053 -219 954 240 60 4 chr12 98966704 98966937 -44819518 - MER90 LTR ERV1 -3 611 366 806 243 61 9 chr12 98966960 98967174 -44819281 - MER90 LTR ERV1 -388 226 2 238 219 27 55 chr12 98967285 98967358 -44819097 + MLT1K LTR MaLR 81 151 -437 830 305 65 21 chr12 98967420 98967807 -44818648 - LTR16A LTR ERVL -21 429 26 1935 166 64 6 chr12 98967905 98968249 -44818206 - MLT1A1 LTR MaLR 0 365 2 350 267 79 61 chr12 98968474 98968538 -44817917 + MLT1K LTR MaLR 379 440 -148 792 244 71 20 chr12 98968538 98968735 -44817720 - MER63A DNA MER1_type -3 207 1 350 267 79 61 chr12 98968735 98968835 -44817620 + MLT1K LTR MaLR 440 546 -42 217 359 0 26 chr12 98968849 98968927 -44817528 + L2 LINE L2 3116 3191 -81 294 29 0 0 chr12 98969119 98969154 -44817301 + (TC)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr12 98969153 98969176 -44817279 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 410 332 97 5 chr12 98969207 98969403 -44817052 + MIR SINE MIR 22 235 -27 1833 195 70 11 chr12 98969503 98969945 -44816510 + Charlie4a DNA MER1_type 41 508 0 221 240 0 40 chr12 98970355 98970430 -44816025 + CT-rich Low_complexity Low_complexity 6 77 0 462 18 0 0 chr12 98970586 98970641 -44815814 + (CA)n Simple_repeat Simple_repeat 1 55 0 207 146 0 0 chr12 98970641 98970682 -44815773 + (TC)n Simple_repeat Simple_repeat 2 42 0 3358 103 36 4 chr12 98971125 98971629 -44814826 + L1PA13 LINE L1 5644 6163 0 2372 103 3 0 chr12 98971635 98971947 -44814508 + AluSp SINE Alu 1 313 0 2876 13 0 3 chr12 98972001 98972313 -44814142 + AluYa5 SINE Alu 1 311 0 1256 187 0 43 chr12 98973780 98974079 -44812376 - L1M4 LINE L1 -1114 5032 4747 525 219 77 71 chr12 98974533 98974716 -44811739 + MER5A DNA MER1_type 4 187 -2 342 0 0 0 chr12 98975643 98975681 -44810774 + (CA)n Simple_repeat Simple_repeat 2 39 0 1771 171 2 57 chr12 98976187 98976554 -44809901 + L1MB7 LINE L1 5485 5829 -355 3426 142 40 23 chr12 98976554 98977123 -44809332 - LTR19B LTR ERV1 -1 579 1 1771 171 2 57 chr12 98977123 98977151 -44809304 + L1MB7 LINE L1 5829 5857 -327 6728 155 3 2 chr12 99077151 99078282 -44708173 - L1P LINE L1 -1498 4648 3517 860 263 22 19 chr12 99078611 99078881 -44707574 - AluJo SINE Alu -40 272 2 21 0 0 0 chr12 99079031 99079052 -44707403 + AT_rich Low_complexity Low_complexity 1 21 0 409 184 0 61 chr12 99080692 99080790 -44705665 + MER58B DNA MER1_type 250 341 0 439 248 94 54 chr12 99081527 99081676 -44704779 + AluJo SINE Alu 7 161 -151 527 203 16 31 chr12 99081776 99081904 -44704551 - LTR9B LTR ERV1 -149 495 370 324 299 0 0 chr12 99081950 99082047 -44704408 + MIR SINE MIR 127 223 -39 206 256 32 104 chr12 99082219 99082344 -44704111 + MIR SINE MIR 32 147 -61 1644 184 55 12 chr12 99082475 99082818 -44703637 + MLT1A1 LTR MaLR 1 358 -7 252 196 0 0 chr12 99083145 99083191 -44703264 - Charlie5 DNA MER1_type -2403 209 164 21 0 0 0 chr12 99086342 99086363 -44700092 + AT_rich Low_complexity Low_complexity 1 21 0 327 172 0 0 chr12 99086767 99086831 -44699624 + AluS SINE Alu 7 70 -233 950 322 8 8 chr12 99087846 99088206 -44698249 + MLT1A1 LTR MaLR 1 360 -5 21 0 0 0 chr12 99089253 99089274 -44697181 + AT_rich Low_complexity Low_complexity 1 21 0 633 287 11 17 chr12 99089799 99089980 -44696475 + MIR SINE MIR 14 193 -69 726 130 0 0 chr12 99090536 99090651 -44695804 - AluSg/x SINE Alu -8 301 187 * 797 78 0 0 chr12 99090645 99090748 -44695707 - AluSg/x SINE Alu -14 298 196 1351 146 0 12 chr12 99090748 99090988 -44695467 - AluY SINE Alu -2 309 73 1267 130 0 5 chr12 99091102 99091302 -44695153 - L1MA3 LINE L1 -412 5893 5695 255 169 42 0 chr12 99091456 99091527 -44694928 + GA-rich Low_complexity Low_complexity 2 75 0 1122 164 72 5 chr12 99091570 99091778 -44694677 - MLT1B LTR MaLR 0 390 169 960 111 14 0 chr12 99091780 99091924 -44694531 - AluSg/x SINE Alu -4 306 161 755 189 24 18 chr12 99091924 99092088 -44694367 - MLT1B LTR MaLR -213 177 13 343 250 38 53 chr12 99092239 99092371 -44694084 - MIR SINE MIR -58 204 75 1201 244 0 14 chr12 99094866 99095153 -44691302 + AluSc SINE Alu 3 285 -14 269 345 131 7 chr12 99096347 99096492 -44689963 + MIR SINE MIR 79 241 -21 22 0 0 0 chr12 99097812 99097834 -44688621 + AT_rich Low_complexity Low_complexity 1 22 0 194 243 0 0 chr12 99098158 99098195 -44688260 - MIR SINE MIR -5 257 221 292 308 13 0 chr12 99098226 99098304 -44688151 + L2 LINE L2 3229 3307 -6 860 144 0 75 chr12 99098683 99098761 -44687694 + MLT1D LTR MaLR 5 64 -441 1780 176 7 89 chr12 99098761 99099188 -44687267 - MSTD LTR MaLR -1 395 4 860 144 0 75 chr12 99099188 99099283 -44687172 + MLT1D LTR MaLR 64 165 -340 854 288 66 4 chr12 99099293 99099536 -44686919 + MLT1D LTR MaLR 248 505 0 207 293 17 0 chr12 99099552 99099610 -44686845 + MIR SINE MIR 132 190 -72 2014 187 34 14 chr12 99099804 99100221 -44686234 - MSTB LTR MaLR 0 426 2 224 304 65 65 chr12 99101181 99101273 -44685182 + L2 LINE L2 2666 2757 -557 205 244 12 61 chr12 99101458 99101540 -44684915 + MIR SINE MIR 185 262 0 1977 151 70 22 chr12 99101593 99101964 -44684491 - MLT1B LTR MaLR -1 389 1 299 296 153 5 chr12 99102006 99102209 -44684246 - MIR SINE MIR -5 257 25 844 217 0 0 chr12 99102677 99102866 -44683589 + AluSq SINE Alu 7 195 -118 359 230 120 0 chr12 99105989 99106089 -44680366 + MIR SINE MIR 118 229 -33 255 294 64 87 chr12 99106260 99106478 -44679977 + L3b LINE CR1 1249 1461 -122 225 0 0 0 chr12 99106501 99106526 -44679929 + (T)n Simple_repeat Simple_repeat 1 25 0 185 347 109 38 chr12 99108131 99108396 -44678059 + L2 LINE L2 2565 2848 -466 465 251 118 21 chr12 99108403 99108590 -44677865 + MIR SINE MIR 6 210 -52 804 179 103 0 chr12 99108712 99108868 -44677587 + LTR8 LTR ERV1 38 209 -482 197 362 106 34 chr12 99109175 99109440 -44677015 + L2 LINE L2 2565 2848 -466 610 231 118 12 chr12 99109447 99109616 -44676839 + MIR SINE MIR 6 192 -70 3875 102 50 71 chr12 99109748 99110080 -44676375 + LTR8 LTR ERV1 29 341 -350 1832 148 3 0 chr12 99110080 99110385 -44676070 - AluSx SINE Alu -6 306 1 3875 102 50 71 chr12 99110385 99110729 -44675726 + LTR8 LTR ERV1 341 691 0 381 370 97 16 chr12 99110856 99111164 -44675291 + L2 LINE L2 2939 3271 -1 507 234 0 0 chr12 99112478 99112585 -44673870 + FLAM_C SINE Alu 15 121 -22 252 251 95 111 chr12 99112590 99112833 -44673622 + MER102a DNA MER1_type 92 330 0 1572 165 3 19 chr12 99112875 99113184 -44673271 - AluSx SINE Alu -4 308 5 205 386 10 10 chr12 99114430 99114531 -44671924 - MIR SINE MIR -142 120 20 484 355 201 7 chr12 99114573 99114981 -44671474 + L3 LINE CR1 976 1462 -115 1031 289 98 42 chr12 99114996 99115795 -44670660 - L2 LINE L2 0 3313 2456 475 240 80 46 chr12 99115889 99116064 -44670391 + MER20B DNA MER1_type 1 181 -602 2064 110 20 0 chr12 99116132 99116431 -44670024 + AluSg SINE Alu 1 305 -5 418 298 44 44 chr12 99116990 99117171 -44669284 - MIR SINE MIR -47 215 35 329 207 98 0 chr12 99117538 99117620 -44668835 + MER91C DNA MER1_type 24 113 -27 546 43 0 0 chr12 99117710 99117779 -44668676 + (CA)n Simple_repeat Simple_repeat 1 69 0 363 214 27 27 chr12 99118865 99118977 -44667478 + MLT1L LTR MaLR 151 262 -353 16280 49 2 6 chr12 99120377 99123234 -44663221 - L1PA5 LINE L1 0 6154 3329 346 307 104 55 chr12 99123280 99123645 -44662810 - L2 LINE L2 -796 2518 2136 524 96 0 11 chr12 99123713 99123807 -44662648 + (TC)n Simple_repeat Simple_repeat 2 94 0 519 126 0 22 chr12 99124374 99124509 -44661946 + (TC)n Simple_repeat Simple_repeat 1 132 0 237 342 103 16 chr12 99124561 99124745 -44661710 - MLT1K LTR MaLR -271 317 118 22 0 0 0 chr12 99125943 99125965 -44660490 + AT_rich Low_complexity Low_complexity 1 22 0 186 268 0 0 chr12 99126289 99126330 -44660125 - MIR SINE MIR -6 256 216 317 295 13 0 chr12 99126356 99126434 -44660021 + L2 LINE L2 3229 3307 -6 504 359 6 0 chr12 99126881 99127037 -44659418 - L2 LINE L2 -219 3053 2897 204 356 0 0 chr12 99127080 99127139 -44659316 + L2 LINE L2 3244 3302 -11 2285 95 0 30 chr12 99127424 99127728 -44658727 - AluSx SINE Alu -17 295 1 2435 95 7 0 chr12 99128550 99128855 -44657600 - AluSx SINE Alu -3 309 3 432 271 117 3 chr12 99129313 99129522 -44656933 + MIR SINE MIR 21 257 -5 2315 122 70 19 chr12 99129564 99129934 -44656521 + MLT1B LTR MaLR 1 389 -1 695 263 101 19 chr12 99129987 99130196 -44656259 - MIR SINE MIR 0 262 37 706 271 85 0 chr12 99130197 99130374 -44656081 - MER91A DNA MER1_type -2 194 3 1251 263 111 21 chr12 99133796 99134272 -44652183 - LTR33 LTR ERVL -2 519 1 471 220 0 8 chr12 99134320 99134438 -44652017 + L1MA10 LINE L1 6218 6334 0 774 50 0 0 chr12 99135480 99135579 -44650876 + (CTATG)n Simple_repeat Simple_repeat 1 99 0 192 77 0 0 chr12 99136380 99136406 -44650049 + (A)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr12 99136717 99136740 -44649715 + (T)n Simple_repeat Simple_repeat 1 23 0 248 333 0 0 chr12 99137876 99137984 -44648471 + L1MC/D LINE L1 5768 5875 -1933 2187 93 10 30 chr12 99138033 99138333 -44648122 - AluSx SINE Alu -18 294 1 1981 125 43 0 chr12 99138341 99138620 -44647835 - AluSx SINE Alu -21 291 1 285 212 71 12 chr12 99138753 99138838 -44647617 - MER103 DNA DNA -35 131 42 246 237 412 0 chr12 99138894 99139008 -44647447 - MIR SINE MIR -3 259 99 205 232 18 54 chr12 99139824 99139880 -44646575 - MER5A DNA MER1_type -11 178 125 623 169 102 25 chr12 99139880 99139998 -44646457 + FLAM_C SINE Alu 1 127 -6 312 353 29 7 chr12 99140011 99140147 -44646308 - MER5A DNA MER1_type -50 139 1 200 167 0 0 chr12 99141079 99141109 -44645346 + polypurine Low_complexity Low_complexity 1 30 0 235 196 0 0 chr12 99141652 99141698 -44644757 + Charlie5 DNA MER1_type 164 209 -2403 228 250 0 0 chr12 99141655 99141711 -44644744 - MER3 DNA MER1_type -119 90 35 * 4373 259 123 38 chr12 99141711 99142222 -44644233 - L2 LINE L2 -1049 2265 1799 2362 100 0 3 chr12 99142222 99142531 -44643924 - AluSx SINE Alu -4 308 1 4373 259 123 38 chr12 99142531 99143304 -44643151 - L2 LINE L2 -1515 1799 1093 1865 185 0 3 chr12 99143304 99143601 -44642854 + AluJb SINE Alu 1 296 -16 4373 259 123 38 chr12 99143601 99144152 -44642303 - L2 LINE L2 -2221 1093 272 1872 167 7 3 chr12 99144154 99144448 -44642007 - AluJb SINE Alu -17 295 1 911 297 88 19 chr12 99144453 99144918 -44641537 + L2 LINE L2 2640 3142 -171 2132 104 50 0 chr12 99145409 99145688 -44640767 + AluSx SINE Alu 1 293 -19 282 404 7 20 chr12 99146056 99146207 -44640248 - L2 LINE L2 -2 3270 3122 330 298 167 0 chr12 99146227 99146341 -44640114 - L2 LINE L2 -3 3310 3178 340 148 28 93 chr12 99146342 99146450 -44640005 - MLT1I LTR MaLR 0 409 309 343 226 9 38 chr12 99146631 99146737 -44639718 - MLT1H LTR MaLR -387 162 60 398 269 117 29 chr12 99146874 99147045 -44639410 - L2 LINE L2 -181 3091 2906 515 355 57 0 chr12 99147071 99147350 -44639105 - L2 LINE L2 -527 2787 2493 3009 99 24 12 chr12 99147830 99148253 -44638202 - MSTA LTR MaLR 0 428 1 1931 124 0 0 chr12 99148412 99148669 -44637786 + AluJb SINE Alu 34 290 -22 325 222 44 22 chr12 99148669 99148759 -44637696 + MIR SINE MIR 147 238 -24 314 266 92 35 chr12 99148787 99148960 -44637495 - L2 LINE L2 -181 3091 2909 254 283 65 65 chr12 99149048 99149140 -44637315 - L2 LINE L2 -557 2757 2666 2470 144 34 14 chr12 99150099 99150516 -44635939 + MSTB LTR MaLR 2 426 0 236 356 58 29 chr12 99150662 99150766 -44635689 - MIR SINE MIR -24 238 132 1298 155 41 21 chr12 99150782 99151127 -44635328 - MLT1D LTR MaLR 0 505 76 2247 138 9 91 chr12 99151127 99151556 -44634899 + MSTD LTR MaLR 3 396 0 1298 155 41 21 chr12 99151556 99151633 -44634822 - MLT1D LTR MaLR -429 76 2 843 262 22 71 chr12 99151871 99151969 -44634486 - L2 LINE L2 0 3313 3212 2984 74 103 28 chr12 99151969 99152426 -44634029 + L1PA10 LINE L1 5678 6168 0 843 262 22 71 chr12 99152426 99152460 -44633995 - L2 LINE L2 -101 3212 3178 1345 192 166 43 chr12 99152460 99152876 -44633579 - MLT1C LTR MaLR 0 467 1 843 262 22 71 chr12 99152876 99153066 -44633389 - L2 LINE L2 -135 3178 3006 2150 111 0 14 chr12 99153682 99154000 -44632455 - AluSc SINE Alu 0 314 1 407 276 16 16 chr12 99154451 99154578 -44631877 - MIR SINE MIR -105 157 31 320 310 88 9 chr12 99154926 99155039 -44631416 - L2 LINE L2 -8 3264 3143 438 254 162 6 chr12 99155350 99155523 -44630932 - MIR SINE MIR 0 262 63 400 328 67 71 chr12 99155520 99155664 -44630791 + L2 LINE L2 2847 2990 -323 * 1591 189 38 3 chr12 99155664 99155955 -44630500 - AluSx SINE Alu 0 312 12 400 328 67 71 chr12 99155955 99156276 -44630179 + L2 LINE L2 2990 3310 -3 701 290 31 22 chr12 99158220 99158444 -44628011 + MIR SINE MIR 29 254 -8 28 0 0 0 chr12 99158952 99158980 -44627475 + GC_rich Low_complexity Low_complexity 1 28 0 265 296 23 0 chr12 99159066 99159154 -44627301 + G-rich Low_complexity Low_complexity 1 90 0 261 232 14 0 chr12 99159207 99159276 -44627179 + C-rich Low_complexity Low_complexity 3 72 0 181 136 0 68 chr12 99159477 99159536 -44626919 + (CCG)n Simple_repeat Simple_repeat 3 57 0 27 0 0 0 chr12 99159588 99159615 -44626840 + GC_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr12 99159846 99159874 -44626581 + GC_rich Low_complexity Low_complexity 1 28 0 223 211 0 53 chr12 99162942 99162999 -44623456 - L2 LINE L2 -8 3264 3211 383 258 120 33 chr12 99163656 99163843 -44622612 - MIR SINE MIR -51 211 17 652 318 68 13 chr12 99164697 99164933 -44621522 - MIR SINE MIR 0 262 14 271 354 100 0 chr12 99165017 99165147 -44621308 - MIR SINE MIR -22 240 98 385 281 0 0 chr12 99165442 99165524 -44620931 + L2 LINE L2 3232 3313 0 1060 171 5 31 chr12 99165852 99166045 -44620410 + MER5A DNA MER1_type 1 188 -1 604 305 75 9 chr12 99166584 99166797 -44619658 + MIR SINE MIR 15 241 -21 1236 136 0 0 chr12 99167076 99167245 -44619210 - AluSg/x SINE Alu -12 298 130 1740 166 45 24 chr12 99167299 99167588 -44618867 - AluJo SINE Alu -5 307 13 1876 185 27 9 chr12 99168329 99168664 -44617791 - MER58B DNA MER1_type 0 341 1 338 277 133 12 chr12 99168746 99168912 -44617543 - L2 LINE L2 -177 3095 2910 1190 173 5 32 chr12 99169111 99169331 -44617124 + AluJo SINE Alu 1 214 -98 258 186 0 0 chr12 99169335 99169378 -44617077 + FAM SINE Alu 125 167 -12 247 294 59 12 chr12 99169671 99169756 -44616699 - L2 LINE L2 -2 3270 3182 560 273 28 0 chr12 99169795 99169938 -44616517 - MIR SINE MIR -1 261 115 690 321 60 44 chr12 99169983 99170481 -44615974 - L2 LINE L2 -218 3054 2540 204 364 33 33 chr12 99170750 99170871 -44615584 + L2 LINE L2 3143 3263 -9 1769 205 105 5 chr12 99171305 99171735 -44614720 - Charlie4a DNA MER1_type -17 491 19 507 60 0 0 chr12 99172204 99172271 -44614184 + (CA)n Simple_repeat Simple_repeat 1 67 0 767 280 127 60 chr12 99173173 99173694 -44612761 - MLT1L LTR MaLR -16 599 44 734 216 89 81 chr12 99173739 99173998 -44612457 - MIR SINE MIR 0 262 2 423 56 0 0 chr12 99174065 99174119 -44612336 + (TTA)n Simple_repeat Simple_repeat 3 56 0 1530 154 12 4 chr12 99174313 99174559 -44611896 - AluJo SINE Alu -18 294 47 23 0 0 0 chr12 99176648 99176671 -44609784 + AT_rich Low_complexity Low_complexity 1 23 0 412 290 22 29 chr12 99177714 99177852 -44608603 + MIR3 SINE MIR 67 203 -5 190 310 220 0 chr12 99178175 99178275 -44608180 + L2 LINE L2 3169 3290 -23 653 272 118 9 chr12 99178916 99179144 -44607311 - MIR SINE MIR -8 254 2 317 313 31 8 chr12 99180012 99180140 -44606315 - L1ME4a LINE L1 -2 6119 5989 228 254 90 0 chr12 99180486 99180553 -44605902 - MIR3 SINE MIR -5 203 131 505 278 86 6 chr12 99181003 99181165 -44605290 - MIR SINE MIR 0 262 88 1957 148 23 0 chr12 99181714 99182017 -44604438 - AluJb SINE Alu -1 311 2 225 313 0 0 chr12 99182628 99182740 -44603715 + (TG)n Simple_repeat Simple_repeat 1 112 0 775 224 137 43 chr12 99183260 99183559 -44602896 - L2 LINE L2 -5 3308 2982 209 246 70 0 chr12 99184006 99184063 -44602392 - L3b LINE CR1 -229 1354 1294 28 29 0 0 chr12 99184117 99184152 -44602303 + AT_rich Low_complexity Low_complexity 1 35 0 182 217 14 0 chr12 99184347 99184416 -44602039 + (TA)n Simple_repeat Simple_repeat 2 71 0 591 196 101 6 chr12 99184437 99184595 -44601860 - L1MC4a LINE L1 -1971 5837 5665 435 193 0 0 chr12 99184595 99184683 -44601772 + (TG)n Simple_repeat Simple_repeat 2 89 0 243 109 0 0 chr12 99184683 99184729 -44601726 + LTR66 LTR ERVL 394 439 -171 235 109 0 0 chr12 99184753 99184799 -44601656 + LTR66 LTR ERVL 394 439 -171 347 225 14 0 chr12 99184807 99184878 -44601577 - L1MC4a LINE L1 -2178 5630 5559 456 215 13 27 chr12 99185022 99185171 -44601284 + GA-rich Low_complexity Low_complexity 2 148 0 868 256 68 56 chr12 99185392 99185896 -44600559 - L1MC5 LINE L1 -183 7778 7269 902 194 99 5 chr12 99186174 99186365 -44600090 + MER3 DNA MER1_type 1 209 0 2439 89 0 0 chr12 99186999 99187302 -44599153 + AluSx SINE Alu 1 303 -9 605 262 102 11 chr12 99187351 99187538 -44598917 - MIR SINE MIR -13 249 46 473 317 178 26 chr12 99187638 99188139 -44598316 + L2 LINE L2 2725 3308 -5 2022 117 35 0 chr12 99188658 99188941 -44597514 + AluSc SINE Alu 1 293 -16 21 36 0 0 chr12 99189610 99189638 -44596817 + AT_rich Low_complexity Low_complexity 1 28 0 1118 158 0 0 chr12 99189813 99189984 -44596471 + FRAM SINE Alu 2 172 -4 792 181 21 14 chr12 99189985 99190129 -44596326 + AluSq/x SINE Alu 2 146 -166 554 0 15 0 chr12 99190260 99190326 -44596129 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 270 333 0 0 chr12 99191369 99191477 -44594978 + L1MC/D LINE L1 5768 5875 -1933 421 113 48 0 chr12 99191526 99191588 -44594867 - AluS SINE Alu -18 291 227 536 340 47 53 chr12 99191770 99191917 -44594538 + L2 LINE L2 2844 2990 -323 2087 103 38 3 chr12 99191917 99192208 -44594247 - AluSx SINE Alu 0 312 12 536 340 47 53 chr12 99192208 99192530 -44593925 + L2 LINE L2 2990 3310 -3 417 316 100 66 chr12 99192528 99192848 -44593607 - L2 LINE L2 -40 3232 2902 * 242 304 68 19 chr12 99193088 99193249 -44593206 - L2 LINE L2 -553 2761 2593 563 233 17 0 chr12 99193463 99193583 -44592872 - MER103 DNA DNA -43 123 2 443 264 14 29 chr12 99193794 99193934 -44592521 + MIR SINE MIR 96 233 -29 2026 169 77 29 chr12 99193946 99194324 -44592131 + MSTD LTR MaLR 1 396 0 664 285 41 14 chr12 99194358 99194579 -44591876 + MIR SINE MIR 2 228 -34 364 223 208 66 chr12 99196034 99196231 -44590224 + MIR SINE MIR 12 236 -26 22 0 0 0 chr12 99197387 99197409 -44589046 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 38 38 chr12 99197675 99197807 -44588648 - L2 LINE L2 0 3272 3141 447 258 42 0 chr12 99199995 99200115 -44586340 - L2 LINE L2 -3 3310 3186 259 277 64 57 chr12 99201830 99201971 -44584484 + L1MC4a LINE L1 5770 5911 -1897 2767 20 0 0 chr12 99202153 99202459 -44583996 + AluYa5 SINE Alu 1 306 -5 7514 48 2 2 chr12 99202487 99202868 -44583587 - L1PA6 LINE L1 -1 6153 5773 2651 61 0 0 chr12 99202868 99203179 -44583276 - AluY SINE Alu 0 311 1 7514 48 2 2 chr12 99203179 99204030 -44582425 - L1PA6 LINE L1 -380 5774 4938 1361 84 0 0 chr12 99204030 99204196 -44582259 - AluSg/x SINE Alu -15 297 132 1964 147 7 7 chr12 99204250 99204543 -44581912 - AluJo SINE Alu -15 297 5 22 35 0 0 chr12 99204661 99204690 -44581765 + AT_rich Low_complexity Low_complexity 1 29 0 2449 68 0 3 chr12 99205062 99205358 -44581097 - AluSq SINE Alu -18 295 1 214 162 0 0 chr12 99205400 99205437 -44581018 + A-rich Low_complexity Low_complexity 2 38 0 468 257 123 51 chr12 99205563 99205711 -44580744 + L1ME LINE L1 4602 4738 -1408 338 0 24 0 chr12 99205711 99205753 -44580702 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 468 257 123 51 chr12 99205753 99205993 -44580462 + L1ME LINE L1 4738 5018 -1128 2128 114 3 10 chr12 99206144 99206441 -44580014 + AluSq SINE Alu 1 295 -18 325 255 61 40 chr12 99206487 99206709 -44579746 + L1P5 LINE L1 5256 5447 -704 * 661 304 52 11 chr12 99206682 99206952 -44579503 + L1ME LINE L1 5530 5810 -311 1225 291 98 24 chr12 99207219 99207792 -44578663 + L2 LINE L2 1826 2440 -874 471 307 16 0 chr12 99207968 99208095 -44578360 + L2 LINE L2 3185 3313 0 186 254 0 0 chr12 99208859 99208926 -44577529 + (CA)n Simple_repeat Simple_repeat 2 68 0 610 314 100 41 chr12 99209122 99209924 -44576531 + L1M4 LINE L1 4497 5357 -789 417 81 0 0 chr12 99209947 99210009 -44576446 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 626 321 90 67 chr12 99210705 99211327 -44575128 - L2 LINE L2 0 3272 2638 514 204 68 53 chr12 99211287 99211419 -44575036 + L2 LINE L2 3180 3313 0 * 2208 192 3 3 chr12 99211760 99212125 -44574330 - MLT1A1 LTR MaLR 0 365 1 979 83 0 0 chr12 99213292 99213413 -44573042 + AluSq/x SINE Alu 1 121 -191 219 69 0 0 chr12 99213413 99213442 -44573013 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 409 347 35 23 chr12 99213550 99213723 -44572732 + MER5A DNA MER1_type 3 188 -1 409 341 37 24 chr12 99214521 99214685 -44571770 + MER5A DNA MER1_type 12 188 -1 1720 164 10 10 chr12 99215744 99216037 -44570418 + AluJo SINE Alu 1 293 -19 2331 76 3 3 chr12 99217865 99218156 -44568299 + AluSx SINE Alu 2 292 -20 204 175 25 0 chr12 99219008 99219048 -44567407 - L2 LINE L2 -1 3312 3272 5432 170 21 5 chr12 99219525 99220994 -44565461 - L1MB2 LINE L1 -1 6170 4679 2231 169 28 12 chr12 99221001 99221433 -44565022 - L1MD1 LINE L1 -9 6233 5795 182 250 0 0 chr12 99221917 99221957 -44564498 - L2 LINE L2 -11 3261 3222 2261 91 0 7 chr12 99223226 99223511 -44562944 - AluSq SINE Alu -30 283 1 186 43 0 0 chr12 99223674 99223697 -44562758 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 270 241 319 17 chr12 99223948 99224064 -44562391 - MIR SINE MIR -111 151 1 1267 176 230 4 chr12 99226720 99226998 -44559457 - MER58B DNA MER1_type 0 341 1 244 333 73 52 chr12 99227814 99228006 -44558449 + L3 LINE CR1 1031 1226 -351 303 281 163 38 chr12 99231047 99231335 -44555120 - L1MC5 LINE L1 -36 7925 7602 3522 123 15 31 chr12 99232331 99232947 -44553508 - L1MA4 LINE L1 0 6300 5695 255 169 42 0 chr12 99233101 99233172 -44553283 + GA-rich Low_complexity Low_complexity 2 75 0 1127 159 72 5 chr12 99233215 99233423 -44553032 - MLT1B LTR MaLR 0 390 169 1130 69 14 0 chr12 99233425 99233569 -44552886 - AluSg/x SINE Alu -4 308 163 985 141 0 73 chr12 99233569 99233760 -44552695 - MLT1B LTR MaLR -213 177 1 361 281 38 38 chr12 99233886 99234046 -44552409 - MIR SINE MIR -60 202 43 209 200 100 25 chr12 99235497 99235577 -44550878 - MIR SINE MIR -93 169 84 1366 86 21 0 chr12 99235745 99235931 -44550524 + MER30B DNA MER1_type 1 190 0 207 314 81 12 chr12 99236400 99236486 -44549969 - L2 LINE L2 -19 3294 3203 927 120 30 8 chr12 99236521 99236654 -44549801 + AluJo SINE Alu 1 136 -176 217 311 14 14 chr12 99236976 99237050 -44549405 - L2 LINE L2 -527 2787 2714 28 0 0 0 chr12 99238186 99238214 -44548241 + AT_rich Low_complexity Low_complexity 1 28 0 678 181 0 0 chr12 99238217 99238333 -44548122 - FLAM_C SINE Alu -26 117 2 568 199 54 113 chr12 99238765 99238986 -44547469 - MIR SINE MIR 0 262 55 307 252 8 48 chr12 99240222 99240356 -44546099 + MIR SINE MIR 29 154 -57 1977 151 0 3 chr12 99240358 99240656 -44545799 - AluSx SINE Alu -15 297 1 579 203 73 0 chr12 99240688 99240811 -44545644 + AluJo SINE Alu 1 132 -170 777 229 69 43 chr12 99240913 99241448 -44545007 - L2 LINE L2 -58 3255 2707 235 275 35 70 chr12 99241503 99241645 -44544810 - MIR SINE MIR -118 144 8 2087 134 3 10 chr12 99241868 99242167 -44544288 + AluJo SINE Alu 2 298 -14 316 296 28 28 chr12 99242326 99242468 -44543987 - MIR3 SINE MIR -49 159 18 2349 94 0 7 chr12 99242839 99243148 -44543307 + AluSx SINE Alu 1 307 -5 805 237 0 0 chr12 99243416 99243572 -44542883 + AluJo SINE Alu 138 293 -9 745 254 77 74 chr12 99243651 99243974 -44542481 + MER102b DNA MER1_type 15 338 -3 2496 88 0 0 chr12 99244061 99244369 -44542086 + AluSc SINE Alu 1 308 -1 364 222 82 52 chr12 99244643 99244778 -44541677 - MER103 DNA DNA -1 165 27 1728 156 13 26 chr12 99244807 99245109 -44541346 - AluJb SINE Alu -14 298 1 514 261 96 0 chr12 99245188 99245345 -44541110 - MIR SINE MIR -46 216 45 198 0 0 0 chr12 99245812 99245834 -44540621 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chr12 99247975 99247995 -44538460 + (A)n Simple_repeat Simple_repeat 1 20 0 1219 108 32 140 chr12 99248624 99248756 -44537699 + AluYb8 SINE Alu 3 148 -160 2076 119 3 10 chr12 99248756 99249067 -44537388 + AluY SINE Alu 1 309 -2 1219 108 32 140 chr12 99249067 99249277 -44537178 + AluYb8 SINE Alu 148 308 0 731 267 6 6 chr12 99249835 99250015 -44536440 - MIR SINE MIR -69 193 14 822 167 8 0 chr12 99250912 99251044 -44535411 + FLAM_C SINE Alu 1 133 0 1668 156 37 17 chr12 99251193 99251488 -44534967 - AluJo SINE Alu -11 301 1 21 0 0 0 chr12 99251637 99251658 -44534797 + AT_rich Low_complexity Low_complexity 1 21 0 181 344 31 0 chr12 99252520 99252584 -44533871 + MIR SINE MIR 13 78 -184 338 211 0 14 chr12 99253257 99253328 -44533127 + MER5A DNA MER1_type 79 148 -41 297 254 55 94 chr12 99253335 99253536 -44532919 + MIR3 SINE MIR 16 208 0 505 299 77 0 chr12 99253933 99254127 -44532328 - MIR SINE MIR 0 262 54 534 306 13 0 chr12 99258798 99258955 -44527500 - MER5A DNA MER1_type 0 189 31 909 198 47 35 chr12 99258965 99259197 -44527258 + MIR SINE MIR 7 241 -21 354 308 15 23 chr12 99259258 99259388 -44527067 + MER5B DNA MER1_type 50 178 0 273 367 13 6 chr12 99260114 99260272 -44526183 - MER5A DNA MER1_type 0 189 31 716 218 42 42 chr12 99260288 99260504 -44525951 + MIR SINE MIR 13 228 -34 289 331 15 23 chr12 99260575 99260705 -44525750 + MER5B DNA MER1_type 50 178 0 221 250 0 0 chr12 99261509 99261553 -44524902 + polypyrimidine Low_complexity Low_complexity 1 44 0 1981 137 20 7 chr12 99262278 99262584 -44523871 - AluSq SINE Alu -3 310 1 865 204 99 5 chr12 99263907 99264108 -44522347 + MER58A DNA MER1_type 1 220 -4 412 293 91 14 chr12 99265218 99265426 -44521029 + MIR SINE MIR 20 243 -19 397 236 73 44 chr12 99265861 99266162 -44520293 - MLT1J LTR MaLR -3 508 143 518 100 14 0 chr12 99266315 99266385 -44520070 + AluJ/FLAM SINE Alu 3 73 -239 358 206 14 0 chr12 99266402 99266475 -44519980 - MLT1J LTR MaLR -369 142 69 643 261 87 0 chr12 99266688 99266889 -44519566 + MIR SINE MIR 37 262 0 181 327 0 0 chr12 99267165 99267220 -44519235 + L2 LINE L2 3003 3057 -215 1799 145 16 58 chr12 99267734 99268044 -44518411 + AluJb SINE Alu 5 301 -11 721 228 105 9 chr12 99268429 99268657 -44517798 + MIR SINE MIR 13 262 0 180 228 41 179 chr12 99268700 99268845 -44517610 - MIR3 SINE MIR -71 137 13 2891 6 0 6 chr12 99269262 99269575 -44516880 + AluYa5 SINE Alu 1 311 0 470 255 20 39 chr12 99270200 99270353 -44516102 + MIR SINE MIR 4 153 -109 1910 155 59 3 chr12 99270737 99271073 -44515382 - MLT1A1 LTR MaLR -13 362 1 266 232 51 106 chr12 99271183 99271349 -44515106 - MIR SINE MIR -61 147 11 368 252 9 18 chr12 99271498 99271609 -44514846 - MIR SINE MIR -35 227 118 1103 133 0 20 chr12 99271644 99271839 -44514616 + LTR9B LTR ERV1 370 560 -84 2375 82 0 7 chr12 99272406 99272700 -44513755 + AluSg SINE Alu 1 292 -18 212 114 0 45 chr12 99273386 99273430 -44513025 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 2280 122 0 0 chr12 99274688 99275000 -44511455 + AluSx SINE Alu 1 312 0 261 248 93 62 chr12 99275156 99275285 -44511170 - Charlie8 DNA MER1_type -2193 224 92 755 192 17 0 chr12 99275290 99275410 -44511045 - FLAM_C SINE Alu -20 123 2 238 182 45 164 chr12 99275411 99275521 -44510934 - Charlie8 DNA MER1_type -2290 127 31 373 360 101 19 chr12 99276710 99277018 -44509437 - L2 LINE L2 -1 3271 2939 4237 80 52 68 chr12 99277145 99277488 -44508967 - LTR8 LTR ERV1 0 691 363 2212 108 10 7 chr12 99277488 99277795 -44508660 + AluSx SINE Alu 1 308 -4 4237 80 52 68 chr12 99277795 99278125 -44508330 - LTR8 LTR ERV1 -328 363 29 586 231 118 12 chr12 99278257 99278426 -44508029 - MIR SINE MIR -70 192 6 234 0 0 0 chr12 99280299 99280325 -44506130 + (A)n Simple_repeat Simple_repeat 1 26 0 274 316 30 38 chr12 99280431 99280564 -44505891 - L3b LINE CR1 -203 1380 1249 360 233 97 10 chr12 99280735 99280838 -44505617 - MIR SINE MIR -33 229 118 419 289 132 6 chr12 99281501 99281660 -44504795 - MIR SINE MIR -5 257 79 440 165 13 0 chr12 99282685 99282764 -44503691 + MER116 DNA Mariner 1 80 0 586 240 106 34 chr12 99283656 99283835 -44502620 + MLT1A2 LTR MaLR 183 374 0 1217 254 117 26 chr12 99283895 99284370 -44502085 + L1ME3A LINE L1 5611 6146 -18 2087 151 58 12 chr12 99284371 99284716 -44501739 + MER46B DNA MER2_type 1 236 0 1135 238 47 38 chr12 99284818 99285158 -44501297 - L1ME3 LINE L1 -42 6120 5778 661 133 83 0 chr12 99285172 99285292 -44501163 + L1MB7 LINE L1 5810 5939 -239 * 928 166 44 0 chr12 99285288 99285469 -44500986 + L1PA16 LINE L1 5957 6145 -21 1137 219 13 4 chr12 99285473 99285711 -44500744 + L1MB7 LINE L1 5922 6161 -23 1425 163 57 39 chr12 99285712 99285994 -44500461 + AluJb SINE Alu 1 287 -25 776 120 23 8 chr12 99289114 99289247 -44497208 - MLT1A1 LTR MaLR -230 135 1 427 272 129 30 chr12 99289328 99289560 -44496895 + L2 LINE L2 3016 3270 -2 1664 185 3 7 chr12 99292840 99293132 -44493323 - AluJb SINE Alu -21 291 1 882 284 185 11 chr12 99293357 99293887 -44492568 - L2 LINE L2 -24 3289 2657 292 310 125 58 chr12 99295001 99295521 -44490934 + L2 LINE L2 2315 2869 -445 503 235 113 14 chr12 99295870 99296035 -44490420 - MIR SINE MIR -61 147 2 347 308 231 0 chr12 99296058 99296175 -44490280 + L2 LINE L2 3129 3272 0 33 43 0 0 chr12 99296356 99296403 -44490052 + AT_rich Low_complexity Low_complexity 1 47 0 258 207 0 0 chr12 99296965 99297023 -44489432 + T-rich Low_complexity Low_complexity 1 58 0 214 210 0 32 chr12 99297937 99297999 -44488456 + T-rich Low_complexity Low_complexity 1 60 0 619 295 123 43 chr12 99298191 99298283 -44488172 - L2 LINE L2 -1532 1782 1699 1696 176 11 3 chr12 99298283 99298567 -44487888 + AluJo SINE Alu 6 291 -21 619 295 123 43 chr12 99298567 99299151 -44487304 - L2 LINE L2 -1615 1699 1052 24 32 0 0 chr12 99301483 99301514 -44484941 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr12 99301517 99301555 -44484900 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr12 99303500 99303524 -44482931 + AT_rich Low_complexity Low_complexity 1 24 0 310 229 160 30 chr12 99304397 99304528 -44481927 + MIR SINE MIR 65 212 -50 468 263 96 13 chr12 99306615 99306771 -44479684 + MIR SINE MIR 20 188 -74 1198 219 17 13 chr12 99307698 99307936 -44478519 + MER8 DNA MER2_type 1 239 0 277 218 39 26 chr12 99307948 99308026 -44478429 - MER116 DNA Mariner -1 79 1 4743 164 47 33 chr12 99308041 99308891 -44477564 + MER21B LTR ERV1 1 862 -1 845 204 0 12 chr12 99309144 99309306 -44477149 + FRAM SINE Alu 1 159 -17 899 200 38 0 chr12 99310605 99310765 -44475690 + FRAM SINE Alu 1 166 0 2358 100 0 0 chr12 99310773 99311072 -44475383 + AluSc SINE Alu 1 299 -10 991 266 73 47 chr12 99311425 99311891 -44474564 - L1ME3A LINE L1 0 6170 5693 2466 229 112 38 chr12 99311919 99313670 -44472785 - L1ME3 LINE L1 -122 6434 4545 * 17770 196 70 20 chr12 99313661 99320884 -44465571 - L1PA13 LINE L1 0 7601 1 2559 224 93 54 chr12 99320884 99321888 -44464567 - L1ME3 LINE L1 -1977 4563 3521 241 153 51 17 chr12 99321898 99321957 -44464498 - L1ME3 LINE L1 -5163 1377 1317 1087 249 211 12 chr12 99321976 99322391 -44464064 + L2 LINE L2 2598 2929 -384 2082 112 0 7 chr12 99322391 99322687 -44463768 - AluSx SINE Alu -18 294 1 1087 249 211 12 chr12 99322687 99322871 -44463584 + L2 LINE L2 2929 3309 -4 378 277 0 10 chr12 99323063 99323164 -44463291 + MER21B LTR ERV1 1 100 -763 1692 219 68 20 chr12 99323202 99323791 -44462664 + MER21B LTR ERV1 100 781 -82 * 1816 192 22 41 chr12 99323787 99324204 -44462251 + MLT1C LTR MaLR 59 467 0 206 196 0 39 chr12 99325076 99325127 -44461328 - MER5A DNA MER1_type 0 189 141 308 299 182 19 chr12 99326014 99326168 -44460287 + MIR3 SINE MIR 16 194 -14 1188 171 19 9 chr12 99326472 99326683 -44459772 - AluJo SINE Alu -4 308 96 195 42 0 0 chr12 99327487 99327511 -44458944 + (CA)n Simple_repeat Simple_repeat 2 25 0 2069 125 16 7 chr12 99328228 99328532 -44457923 + AluSx SINE Alu 5 311 -1 2310 76 3 22 chr12 99328573 99328887 -44457568 - AluY SINE Alu -3 308 1 299 317 32 32 chr12 99329506 99329629 -44456826 - MIR SINE MIR -70 138 16 186 71 0 0 chr12 99330156 99330184 -44456271 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 99332460 99332483 -44453972 + AT_rich Low_complexity Low_complexity 1 23 0 219 313 0 0 chr12 99333596 99333663 -44452792 + L2 LINE L2 3246 3312 -1 602 165 0 28 chr12 99333937 99334046 -44452409 - FLAM_A SINE Alu -8 134 29 341 421 68 12 chr12 99335202 99335794 -44450661 - L2 LINE L2 -2474 840 216 2153 81 0 4 chr12 99336066 99336338 -44450117 - AluSp SINE Alu -4 309 39 465 264 45 0 chr12 99336353 99336463 -44449992 - L2 LINE L2 -7 3306 3192 874 213 10 19 chr12 99336464 99336671 -44449784 + MER3 DNA MER1_type 1 205 -4 2250 110 0 0 chr12 99337547 99337847 -44448608 - AluSx SINE Alu -12 300 1 235 191 32 16 chr12 99337951 99338014 -44448441 + GA-rich Low_complexity Low_complexity 5 68 0 444 225 58 43 chr12 99338031 99338169 -44448286 + MLT1K LTR MaLR 444 583 -5 23 0 0 0 chr12 99338265 99338288 -44448167 + AT_rich Low_complexity Low_complexity 1 23 0 223 391 103 25 chr12 99338767 99338880 -44447575 + L3b LINE CR1 1115 1218 -365 180 0 0 0 chr12 99338880 99338900 -44447555 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 223 391 103 25 chr12 99338900 99339221 -44447234 + L3b LINE CR1 1218 1583 0 25 31 0 0 chr12 99339707 99339739 -44446716 + AT_rich Low_complexity Low_complexity 1 32 0 1021 229 67 12 chr12 99339962 99340215 -44446240 + MER21B LTR ERV1 579 845 -18 1431 163 0 0 chr12 99340217 99340444 -44446011 + AluJb SINE Alu 70 296 -16 396 59 0 0 chr12 99340461 99340512 -44445943 + (CA)n Simple_repeat Simple_repeat 2 52 0 1640 244 61 24 chr12 99340512 99341160 -44445295 + L1ME1 LINE L1 5189 5854 -312 499 294 8 0 chr12 99341163 99341282 -44445173 + L1ME1 LINE L1 5970 6089 -77 343 77 108 0 chr12 99341444 99341509 -44444946 + L1MB3 LINE L1 6111 6182 -1 6376 110 17 18 chr12 99341639 99342397 -44444058 + HSMAR1 DNA Mariner 354 1112 -175 2403 95 3 0 chr12 99342397 99342702 -44443753 + AluSq SINE Alu 3 308 -5 6376 110 17 18 chr12 99342702 99342878 -44443577 + HSMAR1 DNA Mariner 1112 1287 0 3741 224 93 17 chr12 99342878 99344341 -44442114 + L1MB3 LINE L1 3854 5484 -687 5987 221 33 40 chr12 99344382 99345531 -44440924 + L1MA5 LINE L1 21 1177 -6031 2233 114 0 16 chr12 99345531 99345846 -44440609 + AluSg SINE Alu 1 310 0 5987 221 33 40 chr12 99345846 99347578 -44438877 + L1MA5 LINE L1 1177 2921 -4287 1852 150 30 13 chr12 99347578 99347878 -44438577 - AluSx SINE Alu -7 305 1 5987 221 33 40 chr12 99347878 99348122 -44438333 + L1MA5 LINE L1 2921 3165 -4043 2059 126 27 0 chr12 99348122 99348423 -44438032 + AluSc SINE Alu 1 309 0 5987 221 33 40 chr12 99348423 99348604 -44437851 + L1MA5 LINE L1 3165 3346 -3862 2410 84 7 0 chr12 99348604 99348913 -44437542 + AluY SINE Alu 1 311 0 5987 221 33 40 chr12 99348913 99348964 -44437491 + L1MA5 LINE L1 3346 4210 -2998 3291 112 47 4 chr12 99348976 99349466 -44436989 + MER9 LTR ERVK 1 511 0 19895 63 24 25 chr12 99349466 99350228 -44436227 + HERVK9 LTR ERVK 1 762 -5154 207 217 0 83 chr12 99350228 99350288 -44436167 + MER5B DNA MER1_type 55 109 -69 19895 63 24 25 chr12 99350288 99352133 -44434322 + HERVK9 LTR ERVK 762 2664 -3252 578 127 0 0 chr12 99352130 99352209 -44434246 + HERVK9 LTR ERVK 5838 5916 0 * 3186 120 49 10 chr12 99352209 99352701 -44433754 + MER9 LTR ERVK 1 511 0 9369 149 55 32 chr12 99352712 99354598 -44431857 + L1MA5 LINE L1 4228 6070 -1292 1595 215 3 28 chr12 99354598 99354923 -44431532 + 7SLRNA srpRNA srpRNA 4 320 0 9369 149 55 32 chr12 99354923 99355081 -44431374 + L1MA5 LINE L1 6070 6223 -1139 2165 115 3 0 chr12 99355081 99355376 -44431079 - AluSp SINE Alu -17 296 1 9369 149 55 32 chr12 99355376 99355713 -44430742 + L1MA5 LINE L1 6223 6551 -811 2020 111 3 59 chr12 99355713 99356020 -44430435 + AluSx SINE Alu 1 290 -22 9369 149 55 32 chr12 99356020 99356695 -44429760 + L1MA5 LINE L1 6551 7354 -8 2981 175 70 14 chr12 99356702 99357045 -44429410 + L1MB3 LINE L1 5478 5800 -383 2220 112 3 0 chr12 99357045 99357341 -44429114 + AluSx SINE Alu 4 300 -12 2981 175 70 14 chr12 99357341 99357659 -44428796 + L1MB3 LINE L1 5800 6176 -7 329 355 30 10 chr12 99357678 99357875 -44428580 + L1MC4a LINE L1 4583 4783 -1363 860 149 40 14 chr12 99357876 99358024 -44428431 + FRAM SINE Alu 18 169 -7 5971 236 129 44 chr12 99358040 99358862 -44427593 + L1MC4a LINE L1 4777 5528 -2280 1844 142 19 23 chr12 99358862 99359171 -44427284 + AluSx SINE Alu 1 308 -4 5971 236 129 44 chr12 99359171 99361143 -44425312 + L1MC4a LINE L1 5528 7808 0 691 186 8 0 chr12 99362250 99362368 -44424087 + FLAM_A SINE Alu 1 119 -14 2283 81 13 3 chr12 99362551 99362858 -44423597 + AluY SINE Alu 1 310 -1 1707 179 0 14 chr12 99363768 99364053 -44422402 - AluJo SINE Alu -31 281 1 1399 215 21 7 chr12 99364081 99364369 -44422086 + AluJo SINE Alu 1 292 -20 2236 106 0 7 chr12 99365348 99365649 -44420806 - AluSg1 SINE Alu -10 299 1 22 35 0 0 chr12 99365797 99365826 -44420629 + AT_rich Low_complexity Low_complexity 1 29 0 202 364 0 76 chr12 99366096 99366228 -44420227 + MIR SINE MIR 16 137 -71 264 330 42 17 chr12 99368011 99368129 -44418326 - MIR SINE MIR -122 140 20 477 273 62 45 chr12 99368174 99368350 -44418105 - MIR SINE MIR -41 221 43 937 284 111 44 chr12 99368388 99368866 -44417589 - L2 LINE L2 0 3313 2804 519 269 7 14 chr12 99368876 99369021 -44417434 - L2 LINE L2 -662 2652 2509 24 32 0 0 chr12 99369185 99369216 -44417239 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr12 99369459 99369495 -44416960 + AT_rich Low_complexity Low_complexity 1 36 0 396 59 0 0 chr12 99370060 99370111 -44416344 + (CA)n Simple_repeat Simple_repeat 2 52 0 1826 171 0 3 chr12 99370125 99370418 -44416037 - AluSx SINE Alu -20 292 1 1702 172 161 6 chr12 99370495 99370855 -44415600 - MER47B DNA MER2_type -1 417 2 207 194 81 65 chr12 99372598 99372660 -44413795 + L2 LINE L2 3166 3228 -44 249 98 0 0 chr12 99373449 99373490 -44412965 + (A)n Simple_repeat Simple_repeat 1 41 0 225 329 12 12 chr12 99373599 99373681 -44412774 + MIR3 SINE MIR 121 202 -6 * 249 284 15 0 chr12 99373680 99373747 -44412708 - L2 LINE L2 -955 2359 2292 211 274 48 16 chr12 99373921 99373983 -44412472 + MIR3 SINE MIR 127 190 -18 291 282 184 0 chr12 99374082 99374185 -44412270 - MIR SINE MIR -14 248 127 183 158 0 105 chr12 99374246 99374303 -44412152 - L2 LINE L2 -1076 2238 2188 393 254 16 63 chr12 99374405 99374531 -44411924 - L2 LINE L2 0 3313 3194 244 203 0 85 chr12 99374992 99375051 -44411404 + MIR SINE MIR 1 54 -208 235 277 80 18 chr12 99375055 99375167 -44411288 - HAL1 LINE L1 -938 1569 1451 425 189 45 36 chr12 99375178 99375289 -44411166 - L1MD1 LINE L1 0 6242 6131 3432 245 55 44 chr12 99375289 99376672 -44409783 - L1MDa LINE L1 -2532 4008 2611 496 202 10 48 chr12 99376749 99376853 -44409602 + Tigger5 DNA MER2_type 1 100 -2223 340 174 11 41 chr12 99376847 99376939 -44409516 - Tigger5 DNA MER2_type -5 2318 3 * 7503 199 92 17 chr12 99376941 99378879 -44407576 - L1MDa LINE L1 -3921 2619 536 748 248 0 0 chr12 99378876 99379033 -44407422 - L1M4 LINE L1 -2466 3680 3524 * 2349 235 92 18 chr12 99379030 99379152 -44407303 - L1MEc LINE L1 -5569 827 716 2045 146 11 17 chr12 99379152 99379501 -44406954 + MER7A DNA MER2_type 2 346 0 2349 235 92 18 chr12 99379501 99380115 -44406340 - L1MEc LINE L1 -5680 716 36 500 256 139 0 chr12 99380116 99380245 -44406210 + MIR SINE MIR 39 185 -77 5672 141 40 21 chr12 99380264 99380560 -44405895 + L1PA16 LINE L1 4772 5061 -1105 2003 153 0 61 chr12 99380560 99380919 -44405536 + MER1B DNA MER1_type 1 337 0 5672 141 40 21 chr12 99380919 99381977 -44404478 + L1PA16 LINE L1 5061 6157 -9 355 175 68 10 chr12 99382028 99382131 -44404324 + Zaphod DNA AcHobo 863 971 -3060 250 256 75 15 chr12 99382127 99382219 -44404236 + Zaphod DNA AcHobo 3585 3689 -342 * 2070 156 0 0 chr12 99382219 99382520 -44403935 + AluSx SINE Alu 1 301 -11 250 256 75 15 chr12 99382520 99382560 -44403895 + Zaphod DNA AcHobo 3689 3725 -306 222 288 45 0 chr12 99382730 99382796 -44403659 - MIR SINE MIR -1 261 193 37587 84 14 10 chr12 99382878 99388482 -44397973 + L1P2 LINE L1 11 5630 -524 11245 52 8 2 chr12 99388587 99390317 -44396138 + L1PA6 LINE L1 3956 5692 -462 1479 50 0 0 chr12 99390317 99390490 -44395965 + L1PA6 LINE L1 5969 6150 -4 2109 112 10 13 chr12 99390685 99390990 -44395465 + AluY SINE Alu 1 304 -7 2321 108 0 0 chr12 99391427 99391734 -44394721 - AluY SINE Alu -4 307 1 2044 126 3 3 chr12 99392362 99392670 -44393785 + AluSx SINE Alu 1 308 0 199 356 14 0 chr12 99393419 99393492 -44392963 + MIR SINE MIR 30 103 -105 4502 57 17 16 chr12 99393492 99394522 -44391933 + MER11A LTR ERVK 1 1266 0 1252 197 31 80 chr12 99394573 99394862 -44391593 + AluJo SINE Alu 1 275 -37 30 0 0 0 chr12 99395917 99395947 -44390508 + AT_rich Low_complexity Low_complexity 1 30 0 700 266 103 41 chr12 99396842 99397181 -44389274 + MARNA DNA Mariner 182 541 -45 1100 239 21 90 chr12 99397360 99397749 -44388706 - L2 LINE L2 0 3313 2952 1061 86 7 7 chr12 99397763 99397902 -44388553 + AluSq/x SINE Alu 1 139 -173 1155 189 19 53 chr12 99398022 99398287 -44388168 - L1M2 LINE L1 -6281 568 313 1816 182 33 184 chr12 99398313 99398667 -44387788 - MER21A LTR ERV1 -28 903 497 579 78 0 0 chr12 99398667 99398744 -44387711 - Alu SINE Alu -14 298 222 1816 182 33 184 chr12 99398744 99398778 -44387677 - MER21A LTR ERV1 -434 497 460 2246 104 3 10 chr12 99398778 99399085 -44387370 + AluSx SINE Alu 1 305 -7 1816 182 33 184 chr12 99399085 99399662 -44386793 - MER21A LTR ERV1 -471 460 70 387 125 0 0 chr12 99399775 99399831 -44386624 - MER21A LTR ERV1 -863 68 13 743 202 88 13 chr12 99399863 99400680 -44385775 - L1M4 LINE L1 -1003 5143 4232 276 241 50 43 chr12 99400770 99400911 -44385544 - L1M4 LINE L1 -3104 3042 2901 1663 187 24 24 chr12 99400935 99401266 -44385189 - MLT1B LTR MaLR 0 390 60 2437 68 0 13 chr12 99401338 99401646 -44384809 + AluY SINE Alu 1 304 -7 1876 121 7 7 chr12 99402083 99402365 -44384090 - AluY SINE Alu -4 307 26 1792 100 55 29 chr12 99402482 99402793 -44383662 + MER11A LTR ERVK 948 1266 0 2201 115 3 7 chr12 99402844 99403149 -44383306 + AluSx SINE Alu 1 304 -8 381 232 134 9 chr12 99403220 99403332 -44383123 - L2 LINE L2 -467 2847 2722 373 257 73 9 chr12 99403980 99404089 -44382366 + L2 LINE L2 3196 3311 -2 236 250 33 0 chr12 99404273 99404333 -44382122 - MIR SINE MIR -29 233 172 35 54 0 0 chr12 99404917 99404973 -44381482 + AT_rich Low_complexity Low_complexity 1 56 0 197 298 6 124 chr12 99405151 99405312 -44381143 - L2 LINE L2 -566 2748 2607 471 237 57 90 chr12 99405471 99405750 -44380705 + L1MC5 LINE L1 7609 7878 -83 2296 253 78 6 chr12 99405791 99406474 -44379981 + L1MEc LINE L1 34 765 -5631 552 120 0 0 chr12 99406475 99406601 -44379854 + AluSp/q SINE Alu 208 333 0 1398 262 62 47 chr12 99406603 99406865 -44379590 + L1MEc LINE L1 764 1021 -5375 2253 90 0 19 chr12 99406865 99407175 -44379280 + AluY SINE Alu 1 304 -7 1398 262 62 47 chr12 99407175 99407587 -44378868 + L1MEc LINE L1 1021 1448 -4948 1921 138 10 16 chr12 99408035 99408340 -44378115 - AluSx SINE Alu -8 304 2 392 242 13 87 chr12 99408763 99408815 -44377640 - MIR SINE MIR -1 261 207 1288 204 42 25 chr12 99408815 99409100 -44377355 - AluJo SINE Alu -22 290 1 392 242 13 87 chr12 99409100 99409196 -44377259 - MIR SINE MIR -55 207 124 395 360 128 21 chr12 99409534 99409827 -44376628 + L3 LINE CR1 1196 1531 -46 1609 198 121 33 chr12 99409827 99410256 -44376199 - MLT1C LTR MaLR 0 467 1 395 360 128 21 chr12 99410256 99410298 -44376157 + L3 LINE CR1 1531 1567 -10 313 230 250 0 chr12 99410378 99410478 -44375977 - L2 LINE L2 -2 3311 3187 329 284 99 7 chr12 99410492 99410633 -44375822 - MIR SINE MIR -19 243 90 370 208 31 25 chr12 99410641 99410765 -44375690 - L1MEc LINE L1 -3717 2452 2318 231 340 27 27 chr12 99411063 99411210 -44375245 + L3 LINE CR1 1429 1575 -2 23 68 0 0 chr12 99412386 99412430 -44374025 + AT_rich Low_complexity Low_complexity 1 44 0 1260 102 17 0 chr12 99412904 99413080 -44373375 - AluSg/x SINE Alu 0 310 132 2298 81 0 3 chr12 99413080 99413378 -44373077 - AluSx SINE Alu -15 297 1 193 286 0 0 chr12 99413830 99413879 -44372576 - L2 LINE L2 -10 3303 3255 414 57 0 0 chr12 99414046 99414099 -44372356 + (CA)n Simple_repeat Simple_repeat 2 54 0 2336 146 18 0 chr12 99414505 99414888 -44371567 + Tigger1 DNA MER2_type 1973 2362 -56 849 168 75 178 chr12 99414999 99415588 -44370867 + LOR1-int LTR ERV1 1516 2043 -6077 635 267 43 0 chr12 99415569 99415779 -44370676 + LOR1-int LTR ERV1 2343 2561 -2562 * 1433 279 22 22 chr12 99415785 99416416 -44370039 + L1MEc LINE L1 2419 3049 -3166 * 4148 242 99 34 chr12 99416414 99416774 -44369681 + L1ME3A LINE L1 17 352 -6188 213 39 0 0 chr12 99416774 99416800 -44369655 + (CA)n Simple_repeat Simple_repeat 1 26 0 4148 242 99 34 chr12 99416800 99417258 -44369197 + L1ME3A LINE L1 352 779 -5761 1412 197 16 32 chr12 99417258 99417573 -44368882 + AluJo SINE Alu 2 311 -1 4148 242 99 34 chr12 99417573 99417732 -44368723 + L1ME3A LINE L1 779 926 -5614 2160 107 3 7 chr12 99417732 99418017 -44368438 + AluSx SINE Alu 1 286 -26 270 0 0 0 chr12 99418017 99418047 -44368408 + (CATA)n Simple_repeat Simple_repeat 2 31 0 2160 107 3 7 chr12 99418047 99418059 -44368396 + AluSx SINE Alu 286 297 -15 4148 242 99 34 chr12 99418059 99418305 -44368150 + L1ME3A LINE L1 926 1154 -5386 2083 143 3 0 chr12 99418305 99418605 -44367850 + AluSx SINE Alu 1 301 -11 4148 242 99 34 chr12 99418605 99418797 -44367658 + L1ME3A LINE L1 1154 1528 -5012 1309 183 32 0 chr12 99418803 99419054 -44367401 + L1MB5 LINE L1 5908 6166 -8 1355 274 90 52 chr12 99419140 99420182 -44366273 + L1ME3A LINE L1 4421 5504 -1036 434 248 26 20 chr12 99420186 99420339 -44366116 - L1M LINE L1 -760 5418 5265 1099 242 95 91 chr12 99420353 99420687 -44365768 + L1ME3A LINE L1 5864 6195 -369 1253 123 128 0 chr12 99420687 99420788 -44365667 - MER30 DNA MER1_type 0 230 143 206 81 27 0 chr12 99420788 99420825 -44365630 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1253 123 128 0 chr12 99420825 99420927 -44365528 - MER30 DNA MER1_type -87 143 1 1099 242 95 91 chr12 99420927 99421275 -44365180 + L1ME3A LINE L1 6195 6549 -15 1235 196 33 85 chr12 99421278 99421584 -44364871 - AluJo SINE Alu -22 290 1 1195 173 120 46 chr12 99421851 99422053 -44364402 - MER7A DNA MER2_type -2696 342 114 3543 127 24 12 chr12 99422053 99422637 -44363818 + LTR10C LTR ERV1 1 591 0 1195 173 120 46 chr12 99422637 99422718 -44363737 - MER7A DNA MER2_type -2924 114 40 2273 184 57 40 chr12 99422789 99423312 -44363143 - L1ME2 LINE L1 -106 6058 5536 2200 122 7 0 chr12 99423312 99423608 -44362847 - AluSp SINE Alu -15 298 1 2273 184 57 40 chr12 99423608 99423650 -44362805 - L1ME2 LINE L1 -628 5536 5496 260 88 0 0 chr12 99423652 99423686 -44362769 + LTR45B LTR ERV1 3 36 -453 323 243 0 18 chr12 99425217 99425328 -44361127 + GA-rich Low_complexity Low_complexity 5 113 0 1919 152 31 0 chr12 99425378 99425701 -44360754 + LTR45B LTR ERV1 22 354 -135 463 240 116 0 chr12 99425826 99425955 -44360500 - L1ME2 LINE L1 -667 5497 5354 2465 74 3 7 chr12 99426066 99426376 -44360079 + AluY SINE Alu 1 309 -2 377 301 13 70 chr12 99426413 99426569 -44359886 + L2 LINE L2 2897 3043 -229 1124 237 144 31 chr12 99426823 99427275 -44359180 + MLT1D LTR MaLR 3 505 0 339 380 66 15 chr12 99429097 99429234 -44357221 - L2 LINE L2 -8 3264 3121 4286 199 302 15 chr12 99429353 99431110 -44355345 + L1MA4A LINE L1 110 2371 -4478 1163 183 32 21 chr12 99431090 99431374 -44355081 + L1MA4A LINE L1 2938 3224 -3624 * 5200 150 41 15 chr12 99431355 99432279 -44354176 + L1MA4A LINE L1 5523 6496 -509 2358 78 0 26 chr12 99432279 99432588 -44353867 - AluY SINE Alu -10 301 1 5200 150 41 15 chr12 99432588 99433108 -44353347 + L1MA4A LINE L1 6496 7001 -4 24 32 0 0 chr12 99433120 99433151 -44353304 + AT_rich Low_complexity Low_complexity 1 31 0 229 313 50 88 chr12 99433281 99433601 -44352854 - L2 LINE L2 -448 2866 2559 2058 152 0 3 chr12 99433625 99433935 -44352520 + AluJb SINE Alu 1 309 -3 1725 155 51 34 chr12 99434841 99435196 -44351259 - MER46B DNA MER2_type 0 236 1 640 185 117 15 chr12 99435459 99435673 -44350782 + MER39 LTR ERV1 67 507 -200 318 138 17 0 chr12 99435688 99435746 -44350709 + L1PB1 LINE L1 136 194 -6669 13086 180 45 38 chr12 99435746 99436776 -44349679 + L1PB1 LINE L1 995 2016 -4851 2081 128 16 3 chr12 99436776 99437081 -44349374 + AluSc SINE Alu 1 309 0 13086 180 45 38 chr12 99437081 99437287 -44349168 + L1PB1 LINE L1 2016 2219 -4648 1747 151 7 7 chr12 99437287 99437572 -44348883 + AluSx SINE Alu 1 285 -27 13086 180 45 38 chr12 99437572 99438160 -44348295 + L1PB1 LINE L1 2219 2801 -4066 2054 118 10 13 chr12 99438160 99438466 -44347989 + AluSx SINE Alu 1 305 -7 13086 180 45 38 chr12 99438466 99441859 -44344596 + L1PB1 LINE L1 2801 6287 -580 2577 66 0 0 chr12 99441859 99442163 -44344292 + AluY SINE Alu 1 304 -7 13086 180 45 38 chr12 99442163 99442744 -44343711 + L1PB1 LINE L1 6287 6862 -5 678 215 17 12 chr12 99442762 99442934 -44343521 + MER39 LTR ERV1 523 695 -12 366 57 57 0 chr12 99443352 99443405 -44343050 - AluSg/x SINE Alu -171 129 74 1772 143 46 0 chr12 99443408 99443688 -44342767 + AluJb SINE Alu 5 297 -15 3239 259 67 28 chr12 99443704 99445526 -44340929 + L1MEc LINE L1 1775 3637 -2578 3108 213 83 45 chr12 99445550 99445646 -44340809 + L1MB8 LINE L1 3767 3858 -2389 1804 145 3 63 chr12 99445646 99445978 -44340477 + AluJo SINE Alu 1 312 0 3108 213 83 45 chr12 99445978 99446433 -44340022 + L1MB8 LINE L1 3858 4294 -1953 2307 70 3 3 chr12 99446433 99446720 -44339735 - AluY SINE Alu -22 289 3 3108 213 83 45 chr12 99446720 99448537 -44337918 + L1MB8 LINE L1 4294 6247 0 397 219 29 9 chr12 99448633 99448738 -44337717 + MLT1L LTR MaLR 447 553 -62 253 297 116 19 chr12 99449003 99449136 -44337319 - MIR SINE MIR -62 146 2 378 290 86 19 chr12 99449648 99449810 -44336645 + L2 LINE L2 3132 3304 -9 235 180 80 0 chr12 99449886 99449936 -44336519 - MIR SINE MIR -68 140 87 2216 128 0 0 chr12 99449987 99450283 -44336172 + AluSc SINE Alu 1 296 -13 4878 61 0 130 chr12 99450516 99451307 -44335148 + LTR12 LTR ERV1 1 688 0 1952 152 0 10 chr12 99451934 99452244 -44334211 + AluSx SINE Alu 1 307 -5 2011 133 37 40 chr12 99452606 99452982 -44333473 - THE1C LTR MaLR 0 375 1 208 296 167 9 chr12 99452988 99453096 -44333359 - L2 LINE L2 -9 3263 3139 2231 122 0 0 chr12 99454086 99454390 -44332065 + AluSq SINE Alu 1 304 -9 2399 68 3 0 chr12 99454628 99454924 -44331531 + AluSx SINE Alu 1 297 -15 373 267 100 8 chr12 99457219 99457339 -44329116 - MIR SINE MIR 0 262 132 943 81 16 0 chr12 99457459 99457582 -44328873 + AluSq/x SINE Alu 9 133 -180 289 254 189 41 chr12 99457653 99457944 -44328511 + L1ME LINE L1 5491 5824 -297 1452 238 113 68 chr12 99458621 99459445 -44327010 + L1ME2 LINE L1 3325 4185 -1961 * 4138 169 69 16 chr12 99459412 99459895 -44326560 + L1MB7 LINE L1 4681 5137 -1047 2349 108 0 0 chr12 99459895 99460192 -44326263 + AluSx SINE Alu 1 297 -15 4138 169 69 16 chr12 99460192 99461133 -44325322 + L1MB7 LINE L1 5137 6165 -19 1842 133 89 3 chr12 99461157 99461495 -44324960 - Tigger7 DNA MER2_type 0 2487 2121 1491 186 64 0 chr12 99461492 99461772 -44324683 - Tigger7 DNA MER2_type -435 298 1 * 2015 224 100 66 chr12 99461780 99461855 -44324600 + L1ME2 LINE L1 4205 4276 -1870 2395 84 0 3 chr12 99461855 99462152 -44324303 + AluSp SINE Alu 5 300 -13 2015 224 100 66 chr12 99462152 99462349 -44324106 + L1ME2 LINE L1 4276 4465 -1681 2137 141 3 0 chr12 99462349 99462655 -44323800 + AluSx SINE Alu 3 309 -3 2015 224 100 66 chr12 99462655 99462791 -44323664 + L1ME2 LINE L1 4465 4595 -1551 818 129 21 0 chr12 99462791 99462931 -44323524 + L1PB2 LINE L1 6007 6149 -2 2015 224 100 66 chr12 99462931 99463669 -44322786 + L1ME2 LINE L1 4595 5392 -754 4077 192 47 30 chr12 99463685 99464744 -44321711 + L1MB3 LINE L1 4211 5316 -867 1920 157 0 3 chr12 99464744 99465031 -44321424 + AluSx SINE Alu 1 286 -26 4077 192 47 30 chr12 99465031 99465524 -44320931 + L1MB3 LINE L1 5316 5799 -384 3169 97 67 2 chr12 99465524 99465999 -44320456 - MER1A DNA MER1_type 0 529 24 1052 159 82 23 chr12 99465999 99466256 -44320199 + L1MB3 LINE L1 5911 6182 -1 2064 245 81 14 chr12 99466258 99466996 -44319459 + L1ME2 LINE L1 5385 6331 -3 1960 100 0 21 chr12 99467399 99467680 -44318775 - AluSg SINE Alu 0 310 36 246 207 0 0 chr12 99467986 99468044 -44318411 + T-rich Low_complexity Low_complexity 4 61 0 921 173 5 16 chr12 99468051 99468236 -44318219 - MER106A DNA MER1_type -2 234 52 444 284 37 18 chr12 99468276 99468385 -44318070 + L2 LINE L2 3158 3268 -4 2201 114 0 13 chr12 99468729 99469035 -44317420 + AluSc SINE Alu 1 302 -7 2327 188 74 127 chr12 99469040 99470291 -44316164 + L1MC5 LINE L1 6624 7799 -162 814 241 16 5 chr12 99470291 99470478 -44315977 - MER5A DNA MER1_type 0 189 1 2327 188 74 127 chr12 99470478 99470592 -44315863 + L1MC5 LINE L1 7799 7917 -44 630 237 79 9 chr12 99470624 99470852 -44315603 + MER20B DNA MER1_type 539 782 -1 656 196 35 98 chr12 99471227 99471351 -44315104 - MER5B DNA MER1_type -16 162 50 1736 184 0 29 chr12 99471351 99471666 -44314789 + AluJb SINE Alu 1 306 -6 656 196 35 98 chr12 99471666 99471714 -44314741 - MER5B DNA MER1_type -128 50 1 927 190 40 0 chr12 99471730 99471904 -44314551 - MER5A DNA MER1_type -2 187 7 2107 162 160 4 chr12 99471904 99472411 -44314044 + Charlie1 DNA MER1_type 1679 2264 -497 1470 143 68 39 chr12 99472432 99472711 -44313744 - AluJo SINE Alu -17 295 9 8352 29 1 0 chr12 99472756 99473795 -44312660 - L1PA3 LINE L1 -1841 4305 3266 8714 24 1 1 chr12 99473795 99475345 -44311110 + L1PA3 LINE L1 4309 5858 -297 2459 338 31 17 chr12 99476310 99477467 -44308988 - HERV16 LTR ERVL -418 5346 4174 1946 329 54 19 chr12 99477466 99478664 -44307791 - HERV16 LTR ERVL -1928 3068 1786 * 551 348 31 4 chr12 99478967 99479194 -44307261 - HERV16 LTR ERVL -4758 238 6 721 239 84 158 chr12 99479199 99479698 -44306757 - LTR16B LTR ERVL -2 462 1 770 239 54 82 chr12 99479704 99479854 -44306601 + MER20B DNA MER1_type 155 308 -475 2168 111 0 3 chr12 99479854 99480151 -44306304 + AluSc SINE Alu 1 296 -13 770 239 54 82 chr12 99480151 99480352 -44306103 + MER20B DNA MER1_type 308 496 -287 307 259 25 12 chr12 99480472 99480553 -44305902 + L1ME LINE L1 5521 5602 -2206 1883 155 3 7 chr12 99480718 99481022 -44305433 + AluSq SINE Alu 1 303 -10 414 269 62 0 chr12 99481044 99481174 -44305281 + L1ME LINE L1 5563 5700 -421 187 256 0 0 chr12 99481183 99481226 -44305229 - L2 LINE L2 -6 3266 3224 768 169 0 0 chr12 99481319 99481437 -44305018 + FLAM_C SINE Alu 1 118 -15 2739 218 76 27 chr12 99481467 99481873 -44304582 + L1M4 LINE L1 4502 4887 -1259 195 42 0 0 chr12 99481873 99481897 -44304558 + (CA)n Simple_repeat Simple_repeat 1 24 0 2739 218 76 27 chr12 99481897 99482310 -44304145 + L1M4 LINE L1 4887 5361 -785 3986 152 50 19 chr12 99482327 99483031 -44303424 + MER6 DNA MER2_type 130 855 -10 2197 126 0 0 chr12 99483032 99483333 -44303122 + AluSc SINE Alu 1 301 -8 476 189 27 9 chr12 99483364 99483475 -44302980 + L1M4c LINE L1 1253 1365 -5019 2121 109 21 0 chr12 99484026 99484309 -44302146 - AluSx SINE Alu -23 289 1 324 190 0 0 chr12 99484639 99484697 -44301758 + AluS SINE Alu 1 58 -243 204 200 0 0 chr12 99485117 99485167 -44301288 + GA-rich Low_complexity Low_complexity 2 51 0 802 296 78 37 chr12 99485172 99485581 -44300874 + LTR16B LTR ERVL 36 461 -3 291 267 29 29 chr12 99485585 99485690 -44300765 - MER20B DNA MER1_type -632 151 47 184 240 0 40 chr12 99485765 99485815 -44300640 - MIR SINE MIR -122 140 93 542 188 8 38 chr12 99486167 99486300 -44300155 - FLAM_C SINE Alu -4 129 1 2211 125 0 6 chr12 99486694 99487007 -44299448 - AluSx SINE Alu -1 311 1 421 261 85 12 chr12 99487748 99487913 -44298542 - MIR SINE MIR -2 260 84 1291 297 155 28 chr12 99487932 99488495 -44297960 + L2 LINE L2 1963 2453 -860 1862 173 96 8 chr12 99488495 99488859 -44297596 - MSTD LTR MaLR 0 396 1 1291 297 155 28 chr12 99488859 99489278 -44297177 + L2 LINE L2 2453 3073 -240 194 0 39 0 chr12 99489310 99489336 -44297119 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 579 110 0 0 chr12 99489355 99489437 -44297018 - FLAM_A SINE Alu -38 104 23 296 272 132 9 chr12 99489477 99489591 -44296864 + L2 LINE L2 3186 3313 0 1064 212 63 80 chr12 99489736 99490130 -44296325 + MER39 LTR ERV1 167 697 -10 4563 106 0 28 chr12 99491495 99492046 -44294409 - MER41B LTR ERV1 0 635 103 2297 109 3 0 chr12 99492046 99492348 -44294107 + AluSg SINE Alu 1 303 -7 4563 106 0 28 chr12 99492348 99492449 -44294006 - MER41B LTR ERV1 -532 103 1 291 296 36 85 chr12 99492636 99492883 -44293572 + L1ME LINE L1 5333 5567 -554 3371 170 65 39 chr12 99492900 99493576 -44292879 + LTR8A LTR ERV1 34 727 0 395 219 25 2 chr12 99493639 99493739 -44292716 + L1ME3A LINE L1 5475 5570 -592 1833 171 0 19 chr12 99493739 99493951 -44292504 - AluJb SINE Alu -8 304 98 4884 93 2 0 chr12 99493951 99494585 -44291870 + MER41B LTR ERV1 1 635 0 1833 171 0 19 chr12 99494585 99494682 -44291773 - AluJb SINE Alu -214 98 1 605 248 90 9 chr12 99494689 99494987 -44291468 + L1ME3A LINE L1 5562 5916 -254 954 210 104 99 chr12 99494987 99495534 -44290921 + MER34C LTR ERV1 36 585 0 1944 150 24 0 chr12 99495646 99495939 -44290516 - AluSx SINE Alu -12 300 1 565 118 117 1 chr12 99495953 99496064 -44290391 - LTR48 LTR ERV1 -47 740 435 2411 96 0 0 chr12 99496076 99496379 -44290076 - AluSg SINE Alu -7 303 1 456 202 32 21 chr12 99496379 99496473 -44289982 - Tigger7 DNA MER2_type -636 97 3 252 100 0 0 chr12 99496884 99496924 -44289531 + (A)n Simple_repeat Simple_repeat 1 40 0 466 301 32 0 chr12 99497154 99497310 -44289145 - MIR SINE MIR -1 261 101 201 147 0 0 chr12 99497935 99497969 -44288486 + (T)n Simple_repeat Simple_repeat 1 34 0 2363 87 3 31 chr12 99498434 99498755 -44287700 + AluSx SINE Alu 1 312 0 2040 100 4 4 chr12 99499484 99499755 -44286700 - AluSx SINE Alu -19 293 23 388 175 165 0 chr12 99499765 99499862 -44286593 - L2 LINE L2 -19 3294 3182 467 316 147 38 chr12 99500693 99500978 -44285477 + L2 LINE L2 1718 1970 -1344 947 107 28 11 chr12 99500978 99501155 -44285300 + CT-rich Low_complexity Low_complexity 1 180 0 2148 94 45 0 chr12 99501161 99501447 -44285008 - AluSx SINE Alu -13 299 1 467 316 147 38 chr12 99501447 99502222 -44284233 + L2 LINE L2 1974 2902 -412 2176 123 10 3 chr12 99502570 99502872 -44283583 + AluSx SINE Alu 1 304 -8 288 259 114 48 chr12 99503385 99503551 -44282904 - MIR SINE MIR -36 226 50 500 165 0 0 chr12 99503754 99503833 -44282622 - AluJ/FLAM SINE Alu -228 84 6 355 251 165 35 chr12 99503837 99503922 -44282533 - L1MC/D LINE L1 -2266 5542 5469 2216 116 0 7 chr12 99503922 99504223 -44282232 + AluSx SINE Alu 1 299 -13 355 251 165 35 chr12 99504223 99504392 -44282063 - L1MC/D LINE L1 -2339 5469 5255 3022 232 85 80 chr12 99505130 99505191 -44281264 - MER69B DNA AcHobo -1310 1216 1157 1351 170 13 95 chr12 99505191 99505508 -44280947 + AluJo SINE Alu 1 291 -21 3022 232 85 80 chr12 99505508 99505564 -44280891 - MER69B DNA AcHobo -1369 1157 1103 2558 58 0 10 chr12 99505564 99505872 -44280583 + AluY SINE Alu 1 305 -6 3022 232 85 80 chr12 99505872 99506588 -44279867 - MER69B DNA AcHobo -1423 1103 392 2266 110 0 3 chr12 99506588 99506887 -44279568 - AluSx SINE Alu -14 298 1 3022 232 85 80 chr12 99506887 99507107 -44279348 - MER69B DNA AcHobo -2134 392 150 740 167 0 8 chr12 99507107 99507256 -44279199 - FLAM_A SINE Alu 0 148 1 3022 232 85 80 chr12 99507256 99507407 -44279048 - MER69B DNA AcHobo -2376 150 1 578 157 17 52 chr12 99507890 99507923 -44278532 + MLT1D LTR MaLR 85 118 -387 1844 124 13 76 chr12 99507923 99508238 -44278217 + AluSp SINE Alu 5 299 -14 578 157 17 52 chr12 99508238 99508319 -44278136 + MLT1D LTR MaLR 118 195 -310 923 190 0 29 chr12 99508319 99508493 -44277962 + FRAM SINE Alu 1 169 -7 851 234 142 2 chr12 99508518 99508743 -44277712 + MLT1D LTR MaLR 219 505 0 2455 143 13 0 chr12 99508812 99509197 -44277258 + MLT1B LTR MaLR 1 390 0 334 123 68 27 chr12 99509308 99509381 -44277074 - Charlie8 DNA MER1_type 0 2417 2342 2160 101 48 114 chr12 99509395 99509850 -44276605 + MSTA LTR MaLR 1 425 -3 576 211 87 43 chr12 99510053 99510261 -44276194 - Charlie8 DNA MER1_type -2151 266 50 3771 140 26 71 chr12 99510261 99510892 -44275563 + L1MB3 LINE L1 5445 6036 -147 2388 91 0 3 chr12 99510892 99511190 -44275265 + AluSx SINE Alu 1 297 -15 3771 140 26 71 chr12 99511190 99511330 -44275125 + L1MB3 LINE L1 6036 6181 -2 785 203 41 43 chr12 99513934 99514168 -44272287 - MLT1L LTR MaLR -63 552 236 22 0 0 0 chr12 99515915 99515937 -44270518 + AT_rich Low_complexity Low_complexity 1 22 0 703 249 145 44 chr12 99517226 99517541 -44268914 + MLT1L LTR MaLR 196 549 -66 2545 72 0 0 chr12 99517541 99517846 -44268609 + AluSq SINE Alu 1 305 -8 703 249 145 44 chr12 99517846 99517868 -44268587 + MLT1L LTR MaLR 549 567 -48 287 246 93 25 chr12 99518932 99518955 -44267500 + MLT1L LTR MaLR 485 505 -110 2025 140 0 31 chr12 99518955 99519277 -44267178 - AluSx SINE Alu 0 312 1 287 246 93 25 chr12 99519277 99519371 -44267084 + MLT1L LTR MaLR 505 610 -5 2293 102 0 13 chr12 99519777 99520090 -44266365 - AluSg SINE Alu 0 310 2 303 237 59 17 chr12 99520197 99520315 -44266140 + L1ME4a LINE L1 5998 6120 -1 711 226 91 9 chr12 99520724 99520945 -44265510 + L1MC4 LINE L1 6464 6702 -1340 746 240 104 0 chr12 99520950 99521133 -44265322 - MLT1A2 LTR MaLR 0 374 173 724 102 10 0 chr12 99521865 99521963 -44264492 - AluSg SINE Alu -210 100 2 689 217 184 10 chr12 99522064 99522271 -44264184 - AluJo SINE Alu -7 305 63 576 188 288 32 chr12 99522271 99522521 -44263934 - LTR18B LTR ERVL -32 582 269 733 253 63 11 chr12 99522563 99522737 -44263718 - LTR18A LTR ERVL -174 183 1 626 101 11 0 chr12 99522737 99522826 -44263629 - AluJ/FLAM SINE Alu -218 94 5 390 186 350 31 chr12 99522830 99523024 -44263431 - LTR48 LTR ERV1 -369 418 163 422 156 26 13 chr12 99523211 99523284 -44263171 + MER84 LTR ERVI 1 74 -433 2771 137 73 23 chr12 99523284 99523372 -44263083 + MER84 LTR ERVI 2 84 -423 1867 132 21 7 chr12 99523372 99523681 -44262774 + AluSq SINE Alu 1 313 0 2771 137 73 23 chr12 99523681 99524073 -44262382 + MER84 LTR ERVI 84 507 0 1738 154 20 23 chr12 99524454 99524760 -44261695 + AluJb SINE Alu 6 310 -2 415 135 19 29 chr12 99524760 99524864 -44261591 + GA-rich Low_complexity Low_complexity 2 104 0 2288 224 53 19 chr12 99524966 99525494 -44260961 + MER77 LTR ERV1 55 600 -5 2119 129 36 36 chr12 99525581 99525945 -44260510 - THE1B LTR MaLR 0 364 1 9678 86 14 0 chr12 99525945 99527184 -44259271 - THE1B-int LTR MaLR 0 1580 324 1526 162 55 4 chr12 99527184 99527437 -44259018 - AluJo SINE Alu -34 278 13 227 246 131 50 chr12 99527642 99527841 -44258614 - L1MC4a LINE L1 -1705 6103 5889 261 0 0 0 chr12 99527888 99527917 -44258538 + (TG)n Simple_repeat Simple_repeat 2 30 0 480 127 0 0 chr12 99527932 99528003 -44258452 + (T)n Simple_repeat Simple_repeat 1 71 0 296 143 26 85 chr12 99528011 99528200 -44258255 + (TTGTG)n Simple_repeat Simple_repeat 2 179 0 588 221 50 67 chr12 99528425 99528667 -44257788 + L1ME3A LINE L1 5458 5693 -477 2742 194 49 19 chr12 99528683 99529214 -44257241 + MER77 LTR ERV1 53 599 -6 1164 204 100 0 chr12 99529214 99529577 -44256878 + L1ME3A LINE L1 5677 6165 -5 212 314 0 0 chr12 99529605 99529656 -44256799 + polypurine Low_complexity Low_complexity 2 52 0 2929 200 51 25 chr12 99529669 99530318 -44256137 + L1ME1 LINE L1 5497 6162 -4 887 223 32 36 chr12 99530801 99531052 -44255403 - MIR SINE MIR 0 262 13 332 212 19 104 chr12 99531117 99531326 -44255129 - MER112 DNA MER1_type -10 250 6 432 241 62 18 chr12 99532106 99532218 -44254237 - MLT1J2 LTR MaLR -130 320 204 761 204 111 64 chr12 99532758 99532993 -44253462 + L1ME3 LINE L1 5917 6162 0 1531 129 36 8 chr12 99533039 99533287 -44253168 - MSTB LTR MaLR 0 426 172 1197 135 0 0 chr12 99533287 99533457 -44252998 - AluSg/x SINE Alu -9 301 132 2212 100 0 42 chr12 99533457 99533767 -44252688 - AluSg SINE Alu -13 297 1 1085 118 51 11 chr12 99533767 99533945 -44252510 - MSTB LTR MaLR -240 186 2 388 254 42 8 chr12 99534164 99534282 -44252173 + MIR SINE MIR 20 141 -121 2646 148 24 2 chr12 99534347 99534766 -44251689 + MSTA LTR MaLR 1 428 0 221 325 18 75 chr12 99534986 99535160 -44251295 + MIR3 SINE MIR 1 163 -63 4045 106 46 14 chr12 99535405 99536038 -44250417 - L1MA8 LINE L1 -271 6020 5368 251 310 46 0 chr12 99536835 99536922 -44249533 + MLT1L LTR MaLR 200 290 -325 259 86 0 0 chr12 99537097 99537132 -44249323 + MER21B LTR ERV1 1 35 -828 3443 153 43 14 chr12 99537186 99537529 -44248926 + MER21B LTR ERV1 133 500 -363 2799 87 0 6 chr12 99537529 99537895 -44248560 - THE1B LTR MaLR 0 364 1 3443 153 43 14 chr12 99537895 99538108 -44248347 + MER21B LTR ERV1 500 705 -158 351 252 168 0 chr12 99538141 99538248 -44248207 - L2 LINE L2 -1 3312 3188 250 252 81 9 chr12 99538697 99538808 -44247647 - L2 LINE L2 -1335 1979 1861 583 275 149 18 chr12 99538861 99539137 -44247318 + MLT1K LTR MaLR 27 338 -250 1982 144 47 0 chr12 99540131 99540430 -44246025 + 7SLRNA srpRNA srpRNA 1 313 -7 2441 97 0 0 chr12 99540436 99540746 -44245709 + AluSg SINE Alu 1 310 0 26 0 0 0 chr12 99540759 99540785 -44245670 + AT_rich Low_complexity Low_complexity 1 26 0 2533 271 48 71 chr12 99540839 99541691 -44244764 + L2 LINE L2 1875 2745 -568 2810 176 16 52 chr12 99541691 99542265 -44244190 - MLT2B3 LTR ERVL 0 554 2 2533 271 48 71 chr12 99542265 99542276 -44244179 + L2 LINE L2 2745 2755 -558 1659 144 21 69 chr12 99542276 99542610 -44243845 + L1MB3 LINE L1 5825 6141 -42 2338 73 7 20 chr12 99542610 99542911 -44243544 + AluSc SINE Alu 1 297 -12 1659 144 21 69 chr12 99542911 99542952 -44243503 + L1MB3 LINE L1 6141 6182 -1 2533 271 48 71 chr12 99542952 99543525 -44242930 + L2 LINE L2 2755 3298 -15 186 43 0 0 chr12 99543529 99543552 -44242903 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2614 137 41 14 chr12 99543582 99543997 -44242458 - MSTB LTR MaLR 0 426 1 628 209 5 31 chr12 99544401 99544620 -44241835 - L1M4 LINE L1 -6284 258 2 581 224 178 19 chr12 99544622 99544886 -44241569 - L1ME4a LINE L1 -218 5903 5598 459 244 85 77 chr12 99545035 99545281 -44241174 - MLT1L LTR MaLR -143 472 225 329 138 46 31 chr12 99545430 99545495 -44240960 - MLT1G1 LTR MaLR -16 579 514 23 68 0 0 chr12 99545592 99545636 -44240819 + AT_rich Low_complexity Low_complexity 1 44 0 987 290 39 39 chr12 99546669 99547000 -44239455 + L1MC4a LINE L1 5595 5928 -1880 2274 118 0 0 chr12 99547000 99547306 -44239149 + AluSx SINE Alu 1 306 -6 987 290 39 39 chr12 99547306 99547433 -44239022 + L1MC4a LINE L1 5927 6053 -1755 500 269 182 55 chr12 99547479 99547880 -44238575 - L2 LINE L2 -8 3305 2854 326 271 93 23 chr12 99549350 99549479 -44236976 - MIR SINE MIR -55 153 16 1865 211 92 13 chr12 99549568 99550033 -44236422 - MLT1D LTR MaLR -2 503 2 186 71 0 0 chr12 99550312 99550340 -44236115 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1852 145 28 0 chr12 99550355 99550637 -44235818 - AluJb SINE Alu -22 290 1 385 186 0 29 chr12 99551490 99551560 -44234895 - MER39 LTR ERV1 -639 68 1 303 109 0 0 chr12 99551885 99551893 -44234562 + (GGAA)n Simple_repeat Simple_repeat 4 11 -47 1868 152 3 3 chr12 99551893 99552183 -44234272 + AluSx SINE Alu 1 290 -22 303 109 0 0 chr12 99552183 99552229 -44234226 + (GGAA)n Simple_repeat Simple_repeat 10 58 0 195 42 0 0 chr12 99553732 99553756 -44232699 + (TTG)n Simple_repeat Simple_repeat 3 26 0 2147 124 0 0 chr12 99553760 99554042 -44232413 - AluSx SINE Alu -30 282 1 512 291 39 16 chr12 99554045 99554227 -44232228 + MIR SINE MIR 77 262 0 26 23 0 23 chr12 99554460 99554491 -44231964 + AT_rich Low_complexity Low_complexity 1 32 -11 1432 157 95 47 chr12 99554491 99554765 -44231690 + AluJo SINE Alu 1 287 -25 26 23 0 23 chr12 99554765 99554777 -44231678 + AT_rich Low_complexity Low_complexity 32 43 0 2151 113 0 13 chr12 99554777 99555078 -44231377 + AluSx SINE Alu 1 297 -15 2490 65 3 7 chr12 99555081 99555420 -44231035 + AluY SINE Alu 1 311 0 1054 173 0 0 chr12 99555800 99555973 -44230482 + AluSg/x SINE Alu 134 306 -4 1536 204 11 4 chr12 99555997 99556277 -44230178 - AluJo SINE Alu -30 282 1 1295 216 20 120 chr12 99556292 99556637 -44229818 - L1MC5 LINE L1 -821 6987 6814 2311 115 3 10 chr12 99556637 99556951 -44229504 - AluSx SINE Alu 0 312 1 1295 216 20 120 chr12 99556951 99557196 -44229259 - L1MC5 LINE L1 -994 6814 6546 874 163 0 0 chr12 99557220 99557349 -44229106 - FLAM_C SINE Alu -12 131 3 541 291 164 38 chr12 99557551 99558050 -44228405 - HAL1b LINE L1 -493 855 294 412 84 14 14 chr12 99558077 99558148 -44228307 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 279 0 0 0 chr12 99558146 99558177 -44228278 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 2083 136 10 0 chr12 99558177 99558472 -44227983 - AluSx SINE Alu -14 298 1 23 0 0 0 chr12 99558763 99558786 -44227669 + AT_rich Low_complexity Low_complexity 1 23 0 305 228 119 10 chr12 99561234 99561335 -44225120 + MIR SINE MIR 23 134 -128 1116 204 99 129 chr12 99563676 99563931 -44222524 + MER39 LTR ERV1 219 480 -227 2103 92 7 31 chr12 99563931 99564225 -44222230 - AluSq SINE Alu -26 287 1 1116 204 99 129 chr12 99564225 99564374 -44222081 + MER39 LTR ERV1 480 608 -99 1956 151 0 41 chr12 99564374 99564519 -44221936 + AluJb SINE Alu 1 150 -162 2085 142 0 10 chr12 99564519 99564821 -44221634 + AluSx SINE Alu 1 299 -13 1956 151 0 41 chr12 99564821 99564993 -44221462 + AluJb SINE Alu 150 305 -7 1116 204 99 129 chr12 99564993 99565082 -44221373 + MER39 LTR ERV1 608 698 -9 421 217 102 90 chr12 99565361 99565605 -44220850 + MLT1H LTR MaLR 321 549 0 250 289 23 29 chr12 99565661 99565834 -44220621 + L1MC/D LINE L1 5256 5427 -2381 2783 158 25 4 chr12 99566038 99566568 -44219887 + L1 LINE L1 4319 4859 -1287 22 70 0 0 chr12 99566766 99566809 -44219646 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr12 99566859 99566889 -44219566 + AT_rich Low_complexity Low_complexity 1 30 0 775 280 62 23 chr12 99566941 99567198 -44219257 - L1MC4 LINE L1 -143 7899 7633 297 225 42 66 chr12 99567667 99567788 -44218667 - L1ME LINE L1 -329 5833 5714 211 271 85 0 chr12 99567898 99567957 -44218498 - L2 LINE L2 -28 3285 3222 232 320 70 0 chr12 99567957 99568057 -44218398 - L1ME LINE L1 -2256 5552 5446 253 297 84 13 chr12 99568791 99568946 -44217509 + L1MC/D LINE L1 5728 5893 -1915 2156 132 45 12 chr12 99569746 99570079 -44216376 + MER2 DNA MER2_type 1 344 0 2014 133 7 7 chr12 99570192 99570486 -44215969 - AluJb SINE Alu -14 298 5 2372 80 3 3 chr12 99570500 99570800 -44215655 - AluSc SINE Alu -9 300 1 225 0 0 0 chr12 99571295 99571320 -44215135 + (CA)n Simple_repeat Simple_repeat 2 26 0 1641 151 68 7 chr12 99571375 99571494 -44214961 + AluJb SINE Alu 1 111 -201 189 0 0 0 chr12 99571494 99571515 -44214940 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1641 151 68 7 chr12 99571515 99571673 -44214782 + AluJb SINE Alu 111 295 -17 2287 100 0 3 chr12 99572006 99572297 -44214158 + AluY SINE Alu 1 290 -21 493 291 147 27 chr12 99572384 99572758 -44213697 - L3 LINE CR1 -56 1521 1103 490 261 45 40 chr12 99573390 99573566 -44212889 - MER5B DNA MER1_type 0 178 2 352 281 8 50 chr12 99573975 99574029 -44212426 - L2 LINE L2 -490 2824 2769 2243 126 3 0 chr12 99574029 99574339 -44212116 + AluSp SINE Alu 1 311 -2 352 281 8 50 chr12 99574339 99574405 -44212050 - L2 LINE L2 -545 2769 2709 661 161 54 31 chr12 99574494 99574624 -44211831 + FLAM_A SINE Alu 1 133 0 238 214 19 68 chr12 99574820 99574923 -44211532 + L1ME LINE L1 5820 5917 -253 995 123 0 0 chr12 99574932 99575062 -44211393 + FLAM_C SINE Alu 7 136 -7 2137 133 3 0 chr12 99575090 99575398 -44211057 - AluSx SINE Alu -3 309 1 1639 115 90 54 chr12 99576644 99576923 -44209532 + AluJo SINE Alu 1 289 -23 687 264 119 31 chr12 99576989 99577349 -44209106 - L1MC4a LINE L1 -1694 6114 5723 210 298 64 43 chr12 99577448 99577542 -44208913 + L2 LINE L2 2720 2815 -499 2558 65 0 7 chr12 99577967 99578274 -44208181 + AluY SINE Alu 1 305 -6 275 279 15 0 chr12 99578408 99578476 -44207979 + L2 LINE L2 3204 3272 0 30 59 0 0 chr12 99578746 99578797 -44207658 + GC_rich Low_complexity Low_complexity 1 51 0 32 57 0 0 chr12 99579028 99579081 -44207374 + GC_rich Low_complexity Low_complexity 1 53 0 2047 79 41 0 chr12 99580840 99581144 -44205311 + AluSg1 SINE Alu 1 315 0 393 211 78 50 chr12 99582415 99582595 -44203860 + MIR SINE MIR 8 192 -70 22 0 0 0 chr12 99582605 99582627 -44203828 + AT_rich Low_complexity Low_complexity 1 22 0 2462 88 0 0 chr12 99582627 99582934 -44203521 + AluSq SINE Alu 1 307 -6 27 0 0 0 chr12 99582957 99582984 -44203471 + AT_rich Low_complexity Low_complexity 1 27 0 274 283 0 57 chr12 99583359 99583465 -44202990 + MIR SINE MIR 153 252 -10 335 198 182 25 chr12 99583481 99583602 -44202853 - MER46A DNA MER2_type -94 142 3 * 1108 149 32 0 chr12 99583494 99583627 -44202828 + MER46A DNA MER2_type 32 174 -2557 2101 134 3 7 chr12 99583627 99583934 -44202521 + AluSx SINE Alu 1 306 -6 1108 149 32 0 chr12 99583934 99583988 -44202467 + MER46A DNA MER2_type 174 225 -11 394 296 10 0 chr12 99584185 99584283 -44202172 - L2 LINE L2 -1 3271 3173 541 289 102 38 chr12 99585315 99585550 -44200905 - MIR SINE MIR 0 262 13 2259 96 0 3 chr12 99586162 99586455 -44200000 - AluSc SINE Alu -17 292 1 316 265 41 10 chr12 99586519 99586617 -44199838 + MIR SINE MIR 152 252 -10 214 311 0 0 chr12 99587017 99587091 -44199364 - MIR3 SINE MIR -18 190 117 201 39 0 0 chr12 99587426 99587452 -44199003 + (TA)n Simple_repeat Simple_repeat 2 27 0 2406 107 0 0 chr12 99588141 99588450 -44198005 - AluSx SINE Alu -3 309 1 319 210 151 17 chr12 99588691 99588810 -44197645 + MER113 DNA MER1_type? 5 139 -382 1681 156 7 53 chr12 99588886 99589187 -44197268 + AluJb SINE Alu 3 289 -23 570 194 58 19 chr12 99589191 99589346 -44197109 + MER113 DNA MER1_type? 315 475 -46 216 158 0 0 chr12 99589567 99589605 -44196850 + T-rich Low_complexity Low_complexity 1 38 0 369 0 0 0 chr12 99589661 99589702 -44196753 + (TG)n Simple_repeat Simple_repeat 2 42 0 1863 143 14 7 chr12 99589765 99590071 -44196384 - AluSx SINE Alu 0 308 1 275 279 15 0 chr12 99591693 99591761 -44194694 - L2 LINE L2 0 3272 3204 2262 71 10 19 chr12 99591895 99592206 -44194249 - AluY SINE Alu -3 308 1 228 287 64 43 chr12 99592631 99592725 -44193730 - L2 LINE L2 -499 2815 2720 687 264 119 31 chr12 99592824 99593184 -44193271 + L1MC4a LINE L1 5723 6114 -1694 1087 163 22 27 chr12 99593250 99593434 -44193021 - AluJo SINE Alu -23 289 107 378 0 0 0 chr12 99593605 99593647 -44192808 + (TG)n Simple_repeat Simple_repeat 2 43 0 608 235 176 23 chr12 99593656 99593912 -44192543 - L2 LINE L2 -243 3070 2764 2243 126 3 0 chr12 99593912 99594222 -44192233 + AluSp SINE Alu 1 311 -2 608 235 176 23 chr12 99594222 99594288 -44192167 - L2 LINE L2 -549 2764 2709 661 161 54 31 chr12 99594377 99594507 -44191948 + FLAM_A SINE Alu 1 133 0 238 214 19 68 chr12 99594703 99594806 -44191649 + L1ME4a LINE L1 5820 5917 -253 2192 111 3 13 chr12 99594815 99595113 -44191342 + AluSx SINE Alu 7 301 -11 2558 135 31 5 chr12 99595667 99596083 -44190372 + MSTA LTR MaLR 1 427 -1 2039 93 41 4 chr12 99597000 99597294 -44189161 + AluY SINE Alu 1 304 0 719 202 67 88 chr12 99597786 99598024 -44188431 - L1ME3A LINE L1 -1 6169 5937 298 380 8 0 chr12 99598812 99598941 -44187514 + MIR3 SINE MIR 34 163 -45 677 229 66 50 chr12 99598998 99599256 -44187199 + MIR SINE MIR 1 262 0 264 242 174 30 chr12 99599314 99599446 -44187009 + L1ME4a LINE L1 5969 6119 -2 1270 104 21 10 chr12 99600346 99600411 -44186044 - MER30 DNA MER1_type -35 195 132 2408 84 10 0 chr12 99600411 99600708 -44185747 - AluSx SINE Alu -12 300 1 1270 104 21 10 chr12 99600708 99600835 -44185620 - MER30 DNA MER1_type -98 132 1 288 276 26 13 chr12 99601022 99601098 -44185357 - MLT1I LTR MaLR -301 108 42 584 236 70 0 chr12 99601117 99601274 -44185181 - MIR SINE MIR -62 200 33 195 257 40 40 chr12 99601305 99601379 -44185076 - MIR SINE MIR -26 236 163 1396 121 40 48 chr12 99601688 99601936 -44184519 - AluSx SINE Alu -11 301 56 1619 131 40 50 chr12 99603061 99603358 -44183097 + AluJb SINE Alu 1 294 -18 2011 101 21 86 chr12 99603942 99604268 -44182187 + AluSq SINE Alu 1 305 -8 2253 115 0 0 chr12 99604499 99604803 -44181652 + AluSx SINE Alu 1 304 -8 1134 129 41 0 chr12 99604804 99605062 -44181393 + AluSq SINE Alu 136 400 0 31 0 0 0 chr12 99605771 99605802 -44180653 + AT_rich Low_complexity Low_complexity 1 31 0 808 196 0 7 chr12 99605838 99605976 -44180479 - FRAM SINE Alu -39 137 1 1900 149 7 23 chr12 99608583 99608892 -44177563 + AluJo SINE Alu 2 305 -7 2218 122 0 6 chr12 99609077 99609388 -44177067 + AluSx SINE Alu 1 309 -3 271 203 27 40 chr12 99609732 99609806 -44176649 - MIR SINE MIR -157 105 33 712 241 156 13 chr12 99610594 99610818 -44175637 + MIR SINE MIR 3 258 -4 782 164 0 0 chr12 99611465 99611587 -44174868 + FLAM_A SINE Alu 2 123 -10 186 43 0 0 chr12 99611604 99611627 -44174828 + (GA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr12 99611797 99611817 -44174638 + (T)n Simple_repeat Simple_repeat 1 20 0 268 296 0 0 chr12 99612594 99612665 -44173790 + MER112 DNA MER1_type 67 137 -123 2026 123 0 39 chr12 99612788 99613098 -44173357 + AluSx SINE Alu 1 298 -14 1877 146 58 3 chr12 99613098 99613393 -44173062 + AluSx SINE Alu 1 311 -1 644 202 31 16 chr12 99614168 99614297 -44172158 - FLAM_A SINE Alu -1 132 2 1494 124 0 0 chr12 99614635 99614837 -44171618 - AluSg/x SINE Alu -16 294 93 727 158 0 0 chr12 99614839 99614953 -44171502 - AluSq/x SINE Alu -188 124 11 436 235 131 78 chr12 99615015 99615333 -44171122 + L1ME3 LINE L1 5803 6160 -2 1738 172 23 23 chr12 99616071 99616379 -44170076 + AluJb SINE Alu 1 308 -4 201 39 0 0 chr12 99617562 99617588 -44168867 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2229 112 6 22 chr12 99617909 99618108 -44168347 - AluSx SINE Alu -3 309 115 4536 153 84 47 chr12 99618108 99619141 -44167314 - MER11C LTR ERVK 0 1071 1 2229 112 6 22 chr12 99619141 99619255 -44167200 - AluSx SINE Alu -197 115 1 1752 120 68 58 chr12 99620501 99620809 -44165646 + AluJo SINE Alu 1 311 -1 290 232 73 0 chr12 99620809 99620891 -44165564 - MIR SINE MIR -155 107 20 258 317 33 10 chr12 99621267 99621397 -44165058 - MLT1L LTR MaLR -114 492 268 256 222 95 19 chr12 99621420 99621543 -44164912 - MLT1J LTR MaLR -303 312 111 22 0 0 0 chr12 99621979 99622001 -44164454 + AT_rich Low_complexity Low_complexity 1 22 0 194 61 0 30 chr12 99622100 99622133 -44164322 + (CCA)n Simple_repeat Simple_repeat 2 33 0 253 297 84 13 chr12 99622149 99622304 -44164151 + L1MC/D LINE L1 5728 5893 -1915 26 30 0 0 chr12 99623401 99623434 -44163021 + AT_rich Low_complexity Low_complexity 1 33 0 1256 291 106 9 chr12 99623914 99624337 -44162118 + MLT1K LTR MaLR 2 465 -123 447 183 64 130 chr12 99624349 99624389 -44162066 - MLT1H LTR MaLR -12 583 542 2467 87 0 0 chr12 99624389 99624689 -44161766 + AluSx SINE Alu 1 300 -12 447 183 64 130 chr12 99624689 99624837 -44161618 - MLT1H LTR MaLR -53 542 337 3310 162 82 94 chr12 99624838 99625759 -44160696 + MER21A LTR ERV1 2 911 -20 1232 189 96 0 chr12 99625880 99626129 -44160326 - AluJo SINE Alu -39 273 1 785 264 100 11 chr12 99626159 99626428 -44160027 - MLT1H LTR MaLR -256 293 1 409 224 9 43 chr12 99626428 99626544 -44159911 + MLT1K LTR MaLR 477 588 0 210 287 148 9 chr12 99626841 99626949 -44159506 + L2 LINE L2 3189 3311 -2 262 294 0 0 chr12 99627143 99627211 -44159244 - L2 LINE L2 -19 3294 3227 510 248 0 7 chr12 99628120 99628257 -44158198 + L1MB7 LINE L1 5144 5279 -867 252 269 244 0 chr12 99628481 99628600 -44157855 - MIR SINE MIR -11 251 104 333 19 56 0 chr12 99629175 99629229 -44157226 + (TA)n Simple_repeat Simple_repeat 1 57 0 2216 105 0 0 chr12 99629229 99629515 -44156940 - AluSx SINE Alu -26 286 1 315 275 50 23 chr12 99630570 99630712 -44155743 - MIR SINE MIR -63 145 1 21 0 0 0 chr12 99631746 99631767 -44154688 + AT_rich Low_complexity Low_complexity 1 21 0 219 286 238 0 chr12 99632214 99632340 -44154115 - MIR SINE MIR -6 256 101 24 0 0 0 chr12 99632883 99632907 -44153548 + AT_rich Low_complexity Low_complexity 1 24 0 2393 146 55 40 chr12 99632947 99633358 -44153097 + L1MB7 LINE L1 5390 5799 -385 2061 115 10 14 chr12 99633358 99633654 -44152801 + AluSx SINE Alu 1 295 -17 2393 146 55 40 chr12 99633654 99633715 -44152740 + L1MB7 LINE L1 5799 5858 -326 311 169 123 0 chr12 99633720 99633785 -44152670 + L1MB7 LINE L1 5991 6063 -121 2282 96 3 7 chr12 99633786 99634088 -44152367 + AluSq SINE Alu 1 301 -12 545 157 19 19 chr12 99634107 99634215 -44152240 - MLT1C LTR MaLR -359 108 1 2249 114 0 19 chr12 99634234 99634541 -44151914 + AluSx SINE Alu 1 301 -11 2170 106 73 22 chr12 99634864 99635221 -44151234 - THE1C LTR MaLR 0 375 1 198 0 0 0 chr12 99635784 99635806 -44150649 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1936 127 22 4 chr12 99635817 99636085 -44150370 - AluSx SINE Alu -39 273 1 264 248 59 59 chr12 99636093 99636194 -44150261 - MIR SINE MIR -134 128 28 1171 251 229 22 chr12 99636250 99636898 -44149557 + L2 LINE L2 2518 3310 -3 340 224 155 0 chr12 99638332 99638448 -44148007 + L2 LINE L2 3101 3234 -38 1971 128 38 7 chr12 99638913 99639202 -44147253 + AluSx SINE Alu 1 298 -14 403 271 29 36 chr12 99639334 99639474 -44146981 + MIR SINE MIR 12 150 -112 1960 112 0 47 chr12 99639649 99639969 -44146486 - AluSx SINE Alu 0 307 2 2118 133 22 69 chr12 99640204 99640610 -44145845 + MLT1B LTR MaLR 4 390 0 1655 214 31 3 chr12 99640885 99641241 -44145214 + L1ME1 LINE L1 5796 6161 -5 1677 150 12 0 chr12 99641780 99642066 -44144389 + AluSx SINE Alu 29 317 0 2243 113 10 6 chr12 99642863 99643174 -44143281 - AluSx SINE Alu 0 312 1 2335 81 10 19 chr12 99644590 99644897 -44141558 - AluSx SINE Alu -8 304 1 2477 237 42 7 chr12 99645432 99645973 -44140482 + MLT1E1 LTR MaLR 87 646 -8 777 110 118 0 chr12 99646156 99646292 -44140163 - MER30 DNA MER1_type -78 152 1 * 989 158 258 0 chr12 99646292 99646529 -44139926 + MER44D DNA MER2_type 214 567 -38 2032 140 33 12 chr12 99646938 99647274 -44139181 + L1MC1 LINE L1 5991 6333 0 465 108 14 0 chr12 99649776 99649850 -44136605 + L1MB7 LINE L1 6056 6130 -54 669 212 0 15 chr12 99650675 99650807 -44135648 + FLAM_A SINE Alu 1 130 -3 2254 104 0 0 chr12 99652209 99652496 -44133959 - AluSc SINE Alu -22 287 1 2465 95 0 0 chr12 99652505 99652809 -44133646 - AluSx SINE Alu -8 304 1 377 308 99 50 chr12 99653112 99653655 -44132800 + L2 LINE L2 2174 2743 -571 710 195 78 26 chr12 99653775 99653929 -44132526 - FRAM SINE Alu -15 161 1 323 285 34 73 chr12 99653958 99654137 -44132318 + L2 LINE L2 2921 3092 -180 2144 113 7 17 chr12 99654300 99654600 -44131855 + AluSx SINE Alu 5 301 -11 733 233 42 10 chr12 99655509 99655702 -44130753 - MIR SINE MIR -13 249 51 1243 187 108 32 chr12 99655993 99656271 -44130184 - AluJo SINE Alu -13 299 1 1582 128 45 65 chr12 99656681 99656971 -44129484 - AluJo SINE Alu -24 288 5 470 258 20 33 chr12 99657176 99657327 -44129128 + MIR SINE MIR 87 235 -27 27 0 0 0 chr12 99657365 99657392 -44129063 + AT_rich Low_complexity Low_complexity 1 27 0 2067 94 44 0 chr12 99657394 99657669 -44128786 - AluY SINE Alu -24 287 1 223 224 211 0 chr12 99657681 99657757 -44128698 - MIR SINE MIR -64 144 53 2327 97 7 7 chr12 99658058 99658366 -44128089 + AluSx SINE Alu 1 308 -4 2191 110 0 0 chr12 99659417 99659736 -44126719 + AluSx SINE Alu 1 319 0 2127 106 3 3 chr12 99660645 99660957 -44125498 + AluSq SINE Alu 1 312 0 1540 182 93 3 chr12 99661232 99661556 -44124899 - MER46B DNA MER2_type -4 232 5 213 43 64 21 chr12 99661739 99661786 -44124669 + A-rich Low_complexity Low_complexity 2 50 0 252 0 0 0 chr12 99663158 99663186 -44123269 + (T)n Simple_repeat Simple_repeat 1 28 0 217 128 26 0 chr12 99663500 99663539 -44122916 - MIR SINE MIR -109 153 114 312 300 116 48 chr12 99663581 99663874 -44122581 - L2 LINE L2 -110 3162 2850 2282 108 0 3 chr12 99663928 99664235 -44122220 + AluSx SINE Alu 1 306 -6 361 140 0 0 chr12 99664239 99664289 -44122166 + MER46B DNA MER2_type 176 225 -11 394 296 10 0 chr12 99664486 99664584 -44121871 - L2 LINE L2 -1 3271 3173 541 289 102 38 chr12 99665616 99665851 -44120604 - MIR SINE MIR 0 262 13 2259 96 0 3 chr12 99666463 99666756 -44119699 - AluSc SINE Alu -17 292 1 316 265 41 10 chr12 99666820 99666918 -44119537 + MIR SINE MIR 152 252 -10 214 311 0 0 chr12 99667318 99667392 -44119063 - MIR3 SINE MIR -18 190 117 183 42 0 0 chr12 99667727 99667751 -44118704 + (TA)n Simple_repeat Simple_repeat 2 25 0 2218 113 0 0 chr12 99668442 99668749 -44117706 - AluSx SINE Alu 0 307 1 319 210 151 17 chr12 99668990 99669109 -44117346 + MER113 DNA MER1_type? 5 139 -382 1764 166 3 19 chr12 99669185 99669493 -44116962 + AluJb SINE Alu 3 305 -7 2014 133 7 7 chr12 99669507 99669801 -44116654 + AluJb SINE Alu 5 298 -14 2082 139 48 9 chr12 99669914 99670245 -44116210 - MER2 DNA MER2_type 0 344 1 651 309 65 42 chr12 99670902 99671239 -44115216 - L2 LINE L2 -157 3156 2812 200 218 0 18 chr12 99671293 99671348 -44115107 - L2 LINE L2 -653 2661 2608 2228 114 3 13 chr12 99671416 99671588 -44114867 - AluSx SINE Alu -7 305 136 2273 72 0 0 chr12 99671588 99671866 -44114589 - AluSq SINE Alu -1 312 35 2228 114 3 13 chr12 99671866 99672001 -44114454 - AluSx SINE Alu -176 136 1 271 272 176 0 chr12 99672386 99672511 -44113944 - MIR SINE MIR -32 230 84 228 303 104 43 chr12 99672534 99672745 -44113710 - L2 LINE L2 -1362 1952 1729 867 126 31 0 chr12 99672753 99672880 -44113575 + AluSq/x SINE Alu 1 131 -182 1989 131 21 0 chr12 99673580 99673870 -44112585 + AluJb SINE Alu 1 296 -16 3441 119 2 50 chr12 99675450 99676004 -44110451 - MER1A DNA MER1_type 0 527 1 2009 226 41 71 chr12 99676212 99676870 -44109585 + L1ME3 LINE L1 5496 6133 -29 235 269 48 60 chr12 99676748 99676915 -44109540 + L1MA10 LINE L1 6170 6334 0 * 369 284 144 0 chr12 99677004 99677198 -44109257 + L1ME LINE L1 5559 5780 -341 2084 156 36 25 chr12 99677589 99677949 -44108506 - THE1B LTR MaLR 0 364 1 2344 94 0 3 chr12 99678000 99678297 -44108158 + AluSg SINE Alu 9 304 -6 27 0 0 0 chr12 99678320 99678347 -44108108 + AT_rich Low_complexity Low_complexity 1 27 0 265 319 0 0 chr12 99678734 99678828 -44107627 + MIR SINE MIR 159 252 -10 534 122 33 11 chr12 99678857 99678947 -44107508 + MER46A DNA MER2_type 32 123 -113 196 204 0 0 chr12 99679903 99679952 -44106503 + MIR SINE MIR 78 126 -136 2176 108 13 0 chr12 99680031 99680338 -44106117 - AluSp SINE Alu -2 311 1 225 0 0 0 chr12 99680393 99680418 -44106037 + (TG)n Simple_repeat Simple_repeat 2 26 0 2033 96 4 14 chr12 99680911 99681222 -44105233 + AluSc SINE Alu 1 308 0 1569 179 93 3 chr12 99681497 99681821 -44104634 - MER46B DNA MER2_type -4 232 5 213 43 64 21 chr12 99682004 99682051 -44104404 + A-rich Low_complexity Low_complexity 2 50 0 261 0 0 0 chr12 99683423 99683452 -44103003 + (T)n Simple_repeat Simple_repeat 1 29 0 1205 124 0 16 chr12 99684361 99684547 -44101908 - AluSg/x SINE Alu -8 304 122 226 194 45 30 chr12 99686095 99686162 -44100293 - L2 LINE L2 0 3272 3205 207 274 0 55 chr12 99689070 99689143 -44097312 + L2 LINE L2 3244 3312 -1 2328 110 3 0 chr12 99689790 99690099 -44096356 + AluSx SINE Alu 1 310 -2 562 274 43 11 chr12 99690232 99690418 -44096037 + MIR SINE MIR 71 262 0 182 227 40 67 chr12 99690539 99690593 -44095862 + L2 LINE L2 3225 3278 -35 3493 127 49 32 chr12 99690593 99691186 -44095269 - MER6A DNA MER2_type -1 604 2 182 227 40 67 chr12 99691186 99691206 -44095249 + L2 LINE L2 3278 3297 -16 698 223 14 0 chr12 99691486 99691634 -44094821 + FRAM SINE Alu 13 162 -14 199 279 58 0 chr12 99691634 99691720 -44094735 + MER5B DNA MER1_type 85 175 -3 2317 153 62 2 chr12 99691777 99692181 -44094274 - MSTA LTR MaLR 0 428 1 1411 144 24 0 chr12 99692320 99692528 -44093927 - AluJb SINE Alu -13 299 87 2200 112 63 20 chr12 99692531 99692880 -44093575 - THE1B LTR MaLR 0 364 1 2178 115 0 43 chr12 99692895 99693217 -44093238 - AluSq SINE Alu -5 308 1 519 167 19 19 chr12 99693236 99693344 -44093111 + MLT1C LTR MaLR 1 108 -359 2151 113 3 7 chr12 99693363 99693664 -44092791 - AluSq SINE Alu -13 300 1 311 169 123 0 chr12 99693665 99693730 -44092725 - L1MB7 LINE L1 -121 6063 5991 2393 146 55 40 chr12 99693735 99693796 -44092659 - L1MB7 LINE L1 -326 5858 5799 2058 115 10 14 chr12 99693796 99694092 -44092363 - AluSx SINE Alu -17 295 1 2393 146 55 40 chr12 99694092 99694503 -44091952 - L1MB7 LINE L1 -385 5799 5390 24 0 0 0 chr12 99694543 99694567 -44091888 + AT_rich Low_complexity Low_complexity 1 24 0 219 286 238 0 chr12 99695110 99695236 -44091219 + MIR SINE MIR 101 256 -6 21 0 0 0 chr12 99695683 99695704 -44090751 + AT_rich Low_complexity Low_complexity 1 21 0 1512 229 74 22 chr12 99696227 99696724 -44089731 + L2 LINE L2 1212 1734 -1580 1154 229 162 32 chr12 99696725 99697259 -44089196 + L2 LINE L2 2700 3293 -20 244 303 0 0 chr12 99698027 99698103 -44088352 + L2 LINE L2 3197 3272 0 363 257 29 9 chr12 99699036 99699141 -44087314 + L2 LINE L2 3166 3272 0 22 0 0 0 chr12 99699364 99699386 -44087069 + AT_rich Low_complexity Low_complexity 1 22 0 729 273 0 9 chr12 99699390 99699617 -44086838 - L1MA1 LINE L1 -6 6296 6072 25 31 0 0 chr12 99699785 99699817 -44086638 + GC_rich Low_complexity Low_complexity 1 32 0 284 273 106 6 chr12 99700326 99700487 -44085968 + AluSg/x SINE Alu 123 299 -3 454 259 86 40 chr12 99700665 99700717 -44085738 + L1ME LINE L1 5373 5421 -741 2415 84 0 3 chr12 99700717 99701016 -44085439 + AluY SINE Alu 1 298 -13 454 259 86 40 chr12 99701016 99701282 -44085173 + L1ME LINE L1 5421 5795 -367 264 282 18 27 chr12 99701700 99701810 -44084645 - MIR SINE MIR -88 174 66 329 274 0 32 chr12 99701816 99701911 -44084544 + MIR SINE MIR 52 143 -119 1872 124 0 75 chr12 99702733 99703064 -44083391 + AluJb SINE Alu 1 306 -6 515 231 33 39 chr12 99703571 99703764 -44082691 + MER3 DNA MER1_type 41 2443 0 1274 216 52 19 chr12 99704863 99705035 -44081420 + MLT1B LTR MaLR 1 166 -224 1900 90 68 8 chr12 99705035 99705301 -44081154 + AluSx SINE Alu 1 282 -30 1274 216 52 19 chr12 99705301 99705561 -44080894 + MLT1B LTR MaLR 166 385 -5 1860 101 0 116 chr12 99706391 99706728 -44079727 + AluSx SINE Alu 1 298 -4 1679 162 3 37 chr12 99707084 99707405 -44079050 - AluJb SINE Alu -2 310 1 441 180 0 22 chr12 99707417 99707506 -44078949 - AluSc SINE Alu -5 304 218 482 206 48 30 chr12 99707506 99707671 -44078784 - AluSx SINE Alu -138 174 7 436 325 38 12 chr12 99708002 99708027 -44078428 + MIR SINE MIR 10 33 -229 2037 118 3 33 chr12 99708027 99708331 -44078124 + AluSx SINE Alu 1 295 -17 436 325 38 12 chr12 99708331 99708465 -44077990 + MIR SINE MIR 33 173 -89 271 248 88 26 chr12 99708509 99708622 -44077833 - L1ME3 LINE L1 0 6162 6043 398 0 65 0 chr12 99709506 99709568 -44076887 + L1HS LINE L1 6090 6155 0 290 272 58 10 chr12 99711562 99711665 -44074790 - L2 LINE L2 -3 3269 3162 1607 167 105 19 chr12 99712848 99713172 -44073283 + MLT1A1 LTR MaLR 1 352 -13 1867 115 0 8 chr12 99713292 99713544 -44072911 + AluSx SINE Alu 1 250 -62 23 33 0 0 chr12 99713551 99713581 -44072874 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr12 99714645 99714672 -44071783 + AT_rich Low_complexity Low_complexity 1 27 0 310 200 13 160 chr12 99714863 99715013 -44071442 - MLT1K LTR MaLR -7 581 454 494 327 100 18 chr12 99715129 99715349 -44071106 - MLT1K LTR MaLR -152 436 199 386 257 170 23 chr12 99715360 99715531 -44070924 + MLT1K LTR MaLR 10 205 -383 468 211 53 0 chr12 99715669 99715764 -44070691 - MER5A DNA MER1_type -80 109 10 200 137 20 0 chr12 99716128 99716179 -44070276 + A-rich Low_complexity Low_complexity 2 53 0 249 178 181 37 chr12 99716763 99716846 -44069609 - MIR SINE MIR -62 146 56 4855 158 103 29 chr12 99719770 99719940 -44066515 + L1MD2 LINE L1 5144 5300 -1059 1995 136 3 13 chr12 99719940 99720250 -44066205 + AluSx SINE Alu 1 307 -5 4855 158 103 29 chr12 99720250 99720780 -44065675 + L1MD2 LINE L1 5300 5790 -569 2140 99 39 0 chr12 99720780 99721062 -44065393 - AluSx SINE Alu -19 293 1 4855 158 103 29 chr12 99721062 99721489 -44064966 + L1MD2 LINE L1 5790 6357 -2 757 272 173 24 chr12 99722182 99722634 -44063821 + LTR33 LTR ERVL 2 520 -1 531 221 135 25 chr12 99722933 99723096 -44063359 + MIR SINE MIR 80 260 -2 194 254 95 0 chr12 99723130 99723193 -44063262 - MIR SINE MIR -77 185 117 1486 214 92 22 chr12 99723439 99723809 -44062646 - MSTD LTR MaLR 0 396 1 386 154 14 38 chr12 99724023 99724123 -44062332 - AluS SINE Alu -222 80 2 483 296 42 42 chr12 99724329 99724542 -44061913 - MIR SINE MIR -49 213 1 264 314 186 26 chr12 99725073 99725299 -44061156 + MIR SINE MIR 1 262 0 1805 79 0 8 chr12 99725972 99726212 -44060243 + L1PA8 LINE L1 5933 6170 -2 213 121 0 0 chr12 99726215 99726248 -44060207 + (TA)n Simple_repeat Simple_repeat 1 33 0 259 260 0 62 chr12 99726256 99726352 -44060103 - L1MC4 LINE L1 -1339 6703 6614 238 354 0 0 chr12 99726355 99726437 -44060018 + (TA)n Simple_repeat Simple_repeat 1 82 0 261 130 65 0 chr12 99726440 99726486 -44059969 - LTR57-int LTR ERVL -4413 930 882 414 302 161 8 chr12 99726637 99726879 -44059576 - MLT1L LTR MaLR -22 593 315 298 380 8 0 chr12 99729910 99730039 -44056416 + MIR3 SINE MIR 34 163 -45 677 229 66 50 chr12 99730096 99730354 -44056101 + MIR SINE MIR 1 262 0 252 209 288 36 chr12 99730390 99730529 -44055926 + L1ME4a LINE L1 5932 6105 -16 531 241 112 27 chr12 99731628 99731815 -44054640 - L1MD3 LINE L1 -1 7994 7792 256 279 157 7 chr12 99732118 99732265 -44054190 + MIR SINE MIR 28 196 -66 1181 265 25 81 chr12 99732503 99732945 -44053510 - MLT1J LTR MaLR 0 511 95 289 179 18 0 chr12 99732966 99733022 -44053433 - L1MA10 LINE L1 -92 6242 6186 419 200 125 0 chr12 99733023 99733103 -44053352 - MLT1J LTR MaLR -397 114 25 2017 61 19 4 chr12 99733163 99733446 -44053009 - AluY SINE Alu 0 300 14 225 154 0 0 chr12 99733846 99733885 -44052570 + T-rich Low_complexity Low_complexity 1 39 0 333 0 0 0 chr12 99733941 99733978 -44052477 + (TG)n Simple_repeat Simple_repeat 2 38 0 1812 146 14 7 chr12 99734041 99734347 -44052108 - AluSx SINE Alu 0 308 1 225 176 0 0 chr12 99734878 99734912 -44051543 - MER21B LTR ERV1 -811 52 19 590 180 9 9 chr12 99734924 99735035 -44051420 - L1MD3 LINE L1 -500 7495 7385 1302 184 89 61 chr12 99735146 99735473 -44050982 + MER58B DNA MER1_type 1 336 -5 2264 163 35 5 chr12 99736547 99736952 -44049503 + MSTA LTR MaLR 1 417 -11 749 218 27 7 chr12 99738788 99738935 -44047520 - MLT1G1 LTR MaLR 0 595 446 285 211 22 67 chr12 99739303 99739393 -44047062 + MIR SINE MIR 20 105 -157 1836 135 7 14 chr12 99739738 99740035 -44046420 - AluSx SINE Alu -3 309 15 21 0 0 0 chr12 99740511 99740532 -44045923 + AT_rich Low_complexity Low_complexity 1 21 0 1321 195 43 57 chr12 99741252 99741561 -44044894 - L1MC5 LINE L1 -66 7895 7592 1073 197 136 67 chr12 99741561 99741937 -44044518 - MER57A LTR ERV1 -1 402 1 1321 195 43 57 chr12 99741937 99742047 -44044408 - L1MC5 LINE L1 -369 7592 7482 2076 103 67 0 chr12 99742119 99742401 -44044054 - AluSc SINE Alu -8 301 1 829 132 17 157 chr12 99743226 99743343 -44043112 + L1MA7 LINE L1 5935 6004 -287 1662 190 0 21 chr12 99743343 99743633 -44042822 + AluJo SINE Alu 1 284 -28 829 132 17 157 chr12 99743633 99743750 -44042705 + L1MA7 LINE L1 6004 6136 -155 832 491 21 4 chr12 99743754 99744033 -44042422 + AluJo SINE Alu 1 284 -18 1112 144 14 116 chr12 99744047 99744155 -44042300 + L1MA7 LINE L1 6032 6149 -142 1753 159 3 7 chr12 99744155 99744438 -44042017 + AluJo SINE Alu 1 282 -30 1112 144 14 116 chr12 99744438 99744613 -44041842 + L1MA7 LINE L1 6149 6286 -5 22 0 0 0 chr12 99744615 99744637 -44041818 + AT_rich Low_complexity Low_complexity 1 22 0 2376 80 0 0 chr12 99744684 99744983 -44041472 + AluY SINE Alu 1 299 -12 542 281 148 27 chr12 99745061 99745434 -44041021 - L3 LINE CR1 -56 1521 1104 235 304 14 0 chr12 99745775 99745844 -44040611 - L3 LINE CR1 -488 1089 1020 498 256 45 40 chr12 99746066 99746242 -44040213 - MER5B DNA MER1_type 0 178 2 354 310 42 70 chr12 99746955 99747184 -44039271 - L3 LINE CR1 -653 924 703 2058 133 0 26 chr12 99747184 99747492 -44038963 - AluJb SINE Alu -12 300 1 354 310 42 70 chr12 99747492 99747546 -44038909 - L3 LINE CR1 -874 703 649 742 183 0 0 chr12 99747955 99748086 -44038369 + AluJo SINE Alu 1 131 -171 942 234 106 13 chr12 99748218 99748521 -44037934 - L1MD2 LINE L1 -1 6358 6028 808 191 0 7 chr12 99749003 99749150 -44037305 + AluJo SINE Alu 137 282 -30 864 207 161 0 chr12 99749279 99749472 -44036983 - MER58A DNA MER1_type 0 224 1 503 264 107 19 chr12 99749472 99749686 -44036769 + MLT1L LTR MaLR 148 380 -235 789 273 101 21 chr12 99750629 99751017 -44035438 + L2 LINE L2 2256 2674 -640 928 195 110 16 chr12 99751090 99751498 -44034957 - MLT1D LTR MaLR -4 501 1 421 278 144 24 chr12 99751519 99751904 -44034551 + L2 LINE L2 2771 3271 -1 2236 98 0 0 chr12 99751934 99752242 -44034213 + AluSx SINE Alu 1 308 0 1448 165 16 21 chr12 99752370 99752613 -44033842 + AluJo SINE Alu 55 296 -16 201 319 0 85 chr12 99752681 99752775 -44033680 + L3 LINE CR1 885 970 -607 342 0 0 0 chr12 99753742 99753780 -44032675 + (TG)n Simple_repeat Simple_repeat 1 38 0 1232 139 21 10 chr12 99753920 99754114 -44032341 - THE1B LTR MaLR 0 364 169 2027 120 19 38 chr12 99754120 99754436 -44032019 - AluJb SINE Alu 0 312 3 2320 106 0 0 chr12 99754457 99754749 -44031706 - AluSg SINE Alu -18 292 1 1409 198 137 20 chr12 99755090 99755535 -44030920 - Charlie5 DNA MER1_type -107 2505 2009 2238 104 3 0 chr12 99755538 99755837 -44030618 - AluY SINE Alu -11 300 1 3213 94 9 0 chr12 99755838 99756274 -44030181 - L1PA15 LINE L1 -6 6159 5720 880 214 42 0 chr12 99757185 99757353 -44029102 + FAM SINE Alu 1 175 0 769 156 17 17 chr12 99757375 99757554 -44028901 + GA-rich Low_complexity Low_complexity 2 180 0 207 309 51 29 chr12 99758154 99758329 -44028126 - L2 LINE L2 -174 3098 2920 2646 43 0 0 chr12 99758754 99759056 -44027399 - AluY SINE Alu -9 302 1 831 141 148 108 chr12 99759067 99759110 -44027345 - L1MB3 LINE L1 -1 6182 6142 552 202 88 18 chr12 99759110 99759224 -44027231 - FLAM_A SINE Alu -11 122 1 831 141 148 108 chr12 99759224 99759238 -44027217 - L1MB3 LINE L1 -41 6142 6130 2173 106 30 0 chr12 99759238 99759539 -44026916 - AluSg SINE Alu 0 310 1 831 141 148 108 chr12 99759539 99759757 -44026698 - L1MB3 LINE L1 -53 6130 5895 402 21 0 0 chr12 99759965 99760012 -44026443 + (CA)n Simple_repeat Simple_repeat 2 48 0 2238 117 3 0 chr12 99760074 99760372 -44026083 - AluSx SINE Alu -13 299 1 1483 235 77 7 chr12 99760633 99761062 -44025393 + MER113 DNA MER1_type? 60 518 -3 253 356 81 0 chr12 99761100 99761249 -44025206 - L2 LINE L2 0 3313 3153 1881 163 7 3 chr12 99761357 99761651 -44024804 - AluSx SINE Alu -17 295 1 323 305 49 37 chr12 99762054 99762218 -44024237 - L3 LINE CR1 -219 1358 1193 2212 112 13 0 chr12 99762258 99762563 -44023892 + AluSq SINE Alu 1 309 -4 320 222 50 20 chr12 99763933 99764032 -44022423 + L1ME4a LINE L1 6002 6103 -18 468 285 47 29 chr12 99764057 99764229 -44022226 - MIR3 SINE MIR -15 193 19 772 258 75 27 chr12 99764659 99764954 -44021501 - L1MC5 LINE L1 -44 7917 7609 183 179 0 0 chr12 99765004 99765043 -44021412 - MIR SINE MIR -62 200 162 195 267 78 35 chr12 99765102 99765218 -44021237 + L2 LINE L2 2858 2978 -335 290 331 48 18 chr12 99765283 99765449 -44021006 + L2 LINE L2 3120 3290 -23 261 242 0 15 chr12 99765638 99765704 -44020751 - L1ME4a LINE L1 -3 6118 6054 798 289 62 38 chr12 99765751 99766204 -44020251 - L1ME4a LINE L1 -181 5940 5477 207 360 40 0 chr12 99766873 99766948 -44019507 + L2 LINE L2 3228 3305 -8 22 0 0 0 chr12 99767379 99767401 -44019054 + AT_rich Low_complexity Low_complexity 1 22 0 1872 122 0 44 chr12 99767928 99768222 -44018233 + AluSx SINE Alu 32 312 0 271 159 79 0 chr12 99768240 99768303 -44018152 - MIR SINE MIR -111 151 84 2426 197 101 10 chr12 99768402 99768919 -44017536 - MLT1F1 LTR MaLR -2 565 2 1670 176 10 20 chr12 99769093 99769394 -44017061 - AluJo SINE Alu -14 298 1 272 309 88 7 chr12 99770010 99770146 -44016309 + MIR SINE MIR 46 192 -70 279 0 0 0 chr12 99770520 99770551 -44015904 + (TG)n Simple_repeat Simple_repeat 1 31 0 863 227 23 46 chr12 99771635 99771895 -44014560 - MIR SINE MIR -3 259 6 307 331 114 0 chr12 99772165 99772349 -44014106 + MIR SINE MIR 2 206 -56 212 149 21 0 chr12 99772806 99772853 -44013602 + GA-rich Low_complexity Low_complexity 2 49 0 278 265 98 0 chr12 99773002 99773104 -44013351 - MIR SINE MIR -48 214 103 226 172 9 147 chr12 99773216 99773248 -44013207 - MER20B DNA MER1_type 0 783 748 1879 129 79 0 chr12 99773248 99773526 -44012929 - AluSx SINE Alu -8 304 5 226 172 9 147 chr12 99773526 99773609 -44012846 - MER20B DNA MER1_type -35 748 684 240 175 18 18 chr12 99773614 99773671 -44012784 - MER20B DNA MER1_type -701 82 26 2308 111 0 0 chr12 99774462 99774760 -44011695 + AluSg SINE Alu 1 298 -12 1266 177 0 43 chr12 99775006 99775238 -44011217 + AluSq SINE Alu 3 224 -89 522 261 82 33 chr12 99776142 99776326 -44010129 - MIR SINE MIR -7 255 63 1076 228 53 11 chr12 99776494 99776775 -44009680 - L1ME2 LINE L1 0 6164 5872 23 0 0 0 chr12 99777079 99777102 -44009353 + AT_rich Low_complexity Low_complexity 1 23 0 180 188 125 21 chr12 99777422 99777470 -44008985 - MIR SINE MIR -190 72 20 309 361 84 19 chr12 99778609 99778764 -44007691 + L2 LINE L2 3106 3270 -2 2362 130 78 24 chr12 99778785 99779207 -44007248 - MER65A LTR ERV1 0 445 1 271 288 90 18 chr12 99779413 99779524 -44006931 + MIR SINE MIR 32 150 -58 1325 178 155 37 chr12 99779624 99779978 -44006477 + MSTD LTR MaLR 1 396 0 2476 74 0 6 chr12 99780187 99780499 -44005956 - AluY SINE Alu -1 310 1 267 252 112 42 chr12 99780940 99781083 -44005372 + MLT1L LTR MaLR 463 615 0 776 257 61 15 chr12 99781086 99781347 -44005108 - L1ME2 LINE L1 -253 5868 5596 351 352 111 19 chr12 99781900 99782207 -44004248 + L2 LINE L2 2954 3288 -25 243 214 83 12 chr12 99782527 99782611 -44003844 - L1MC5 LINE L1 -22 7939 7850 2405 97 7 0 chr12 99783697 99784005 -44002450 - AluSx SINE Alu -2 310 1 312 300 116 48 chr12 99784059 99784352 -44002103 + L2 LINE L2 2850 3162 -110 217 128 26 0 chr12 99784394 99784433 -44002022 + MIR SINE MIR 114 153 -109 344 280 147 0 chr12 99784601 99784758 -44001697 - MIR SINE MIR 0 262 83 1053 206 44 13 chr12 99786069 99786297 -44000158 + MER46C DNA MER2_type 3 237 -101 2244 111 58 3 chr12 99786959 99787303 -43999152 + L1PB1 LINE L1 5788 6150 -1 611 239 123 10 chr12 99787319 99787541 -43998914 + MIR SINE MIR 19 262 0 298 315 31 24 chr12 99787962 99788046 -43998409 - L2 LINE L2 -3 3269 3182 1549 167 19 59 chr12 99788046 99788370 -43998085 + AluJo SINE Alu 1 311 -1 298 315 31 24 chr12 99788370 99788412 -43998043 - L2 LINE L2 -90 3182 3142 233 270 0 79 chr12 99788719 99788808 -43997647 - L2 LINE L2 -192 3080 2999 703 307 43 7 chr12 99788812 99789089 -43997366 + L1ME4a LINE L1 5533 5819 -302 312 239 87 71 chr12 99789179 99789363 -43997092 + L1ME4a LINE L1 5934 6120 -1 2362 67 0 7 chr12 99789371 99789656 -43996799 + AluSg SINE Alu 1 283 -27 2729 87 5 0 chr12 99790305 99790673 -43995782 - L1PB1 LINE L1 0 6151 5782 753 108 35 0 chr12 99790678 99790913 -43995542 + (TA)n Simple_repeat Simple_repeat 1 243 0 419 98 33 0 chr12 99790926 99790987 -43995468 - L1PB1 LINE L1 -427 5724 5662 2504 84 0 3 chr12 99791198 99791508 -43994947 - AluSc SINE Alu 0 309 1 1576 203 29 38 chr12 99791706 99792046 -43994409 - MER1B DNA MER1_type 0 337 1 731 271 126 29 chr12 99792707 99793158 -43993297 + L1ME4a LINE L1 5434 5928 -193 6668 131 70 9 chr12 99793480 99794639 -43991816 + Tigger3b DNA MER2_type 1 1229 -2 3076 167 31 49 chr12 99794643 99795038 -43991417 - MER6A DNA MER2_type -260 605 223 189 0 0 0 chr12 99795038 99795059 -43991396 + (CA)n Simple_repeat Simple_repeat 1 21 0 3076 167 31 49 chr12 99795059 99795279 -43991176 - MER6A DNA MER2_type -642 223 1 1611 132 0 13 chr12 99795870 99796105 -43990350 + AluSx SINE Alu 48 279 -33 696 35 0 0 chr12 99796106 99796193 -43990262 + (GA)n Simple_repeat Simple_repeat 1 87 0 25 0 0 0 chr12 99796194 99796219 -43990236 + AT_rich Low_complexity Low_complexity 1 25 0 402 21 0 0 chr12 99797307 99797354 -43989101 + (CA)n Simple_repeat Simple_repeat 2 48 0 798 164 77 0 chr12 99797416 99797611 -43988844 - AluSc SINE Alu -13 296 87 4764 154 27 28 chr12 99798351 99798937 -43987518 - L1MB8 LINE L1 0 6178 5601 779 163 8 0 chr12 99798937 99799060 -43987395 - FLAM_A SINE Alu -9 124 1 4764 154 27 28 chr12 99799060 99799512 -43986943 - L1MB8 LINE L1 -577 5601 5150 2676 150 28 22 chr12 99799533 99800044 -43986411 + L1MB3 LINE L1 5636 6148 -35 2278 119 0 3 chr12 99800059 99800370 -43986085 + AluSx SINE Alu 1 310 -2 300 307 7 64 chr12 99801257 99801397 -43985058 - L2 LINE L2 0 3272 3141 1741 196 0 3 chr12 99801548 99801860 -43984595 + AluJo SINE Alu 1 311 -1 341 279 122 23 chr12 99801943 99802115 -43984340 + MIR SINE MIR 19 207 -55 1209 260 25 81 chr12 99802339 99802781 -43983674 - MLT1J LTR MaLR 0 511 95 289 179 18 0 chr12 99802802 99802858 -43983597 - L1MA10 LINE L1 -92 6242 6186 419 200 125 0 chr12 99802859 99802939 -43983516 - MLT1J LTR MaLR -397 114 25 2407 57 0 0 chr12 99802999 99803299 -43983156 - AluY SINE Alu 0 300 1 187 189 0 0 chr12 99803978 99804015 -43982440 + L2 LINE L2 3143 3179 -93 225 259 17 0 chr12 99804082 99804140 -43982315 + MLT1K LTR MaLR 132 190 -398 276 297 39 108 chr12 99804401 99804633 -43981822 + MIR SINE MIR 47 262 0 388 291 16 8 chr12 99805080 99805207 -43981248 - MER5B DNA MER1_type -47 131 4 23 0 0 0 chr12 99805364 99805387 -43981068 + AT_rich Low_complexity Low_complexity 1 23 0 2247 118 13 0 chr12 99805880 99806186 -43980269 - AluSx SINE Alu -2 310 1 311 182 0 0 chr12 99807004 99807059 -43979396 - L2 LINE L2 -5 3308 3254 1805 79 0 8 chr12 99808545 99808785 -43977670 + L1PA8 LINE L1 5933 6170 -2 213 121 0 0 chr12 99808788 99808821 -43977634 + (TA)n Simple_repeat Simple_repeat 1 33 0 259 260 0 62 chr12 99808829 99808925 -43977530 - L1MC4 LINE L1 -1339 6703 6614 257 318 0 0 chr12 99808928 99808991 -43977464 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 251 150 50 33 chr12 99808999 99809059 -43977396 - LTR57-int LTR ERVL -4401 942 882 214 416 0 0 chr12 99809060 99809149 -43977306 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 515 295 113 45 chr12 99809211 99809564 -43976891 - MLT1L LTR MaLR -22 593 217 353 291 87 6 chr12 99810287 99810459 -43975996 + MIR SINE MIR 35 220 -42 2077 135 26 0 chr12 99810946 99811249 -43975206 - AluSx SINE Alu -1 311 1 623 267 36 13 chr12 99811312 99811537 -43974918 - L1ME3A LINE L1 -220 5950 5721 508 213 0 0 chr12 99811571 99811665 -43974790 + MER94 DNA DNA 1 94 -40 188 321 25 0 chr12 99812095 99812176 -43974279 - MIR SINE MIR -117 145 63 1121 159 14 77 chr12 99812820 99813028 -43973427 + AluJo SINE Alu 1 195 -117 974 205 0 0 chr12 99813124 99813290 -43973165 + FRAM SINE Alu 1 166 0 229 246 0 0 chr12 99813433 99813494 -43972961 - L1M4 LINE L1 -418 5756 5696 974 205 0 0 chr12 99813507 99813673 -43972782 - FRAM SINE Alu 0 166 1 1319 104 0 6 chr12 99813675 99813858 -43972597 - THE1B LTR MaLR -182 182 1 * 2521 177 14 2 chr12 99813858 99814268 -43972187 - MSTB1 LTR MaLR -17 415 1 1986 149 3 3 chr12 99814485 99814787 -43971668 - AluJb SINE Alu -2 310 9 215 286 13 13 chr12 99814887 99814964 -43971491 + (TG)n Simple_repeat Simple_repeat 2 78 0 183 156 0 0 chr12 99815596 99815628 -43970827 + (CA)n Simple_repeat Simple_repeat 1 32 0 423 127 0 28 chr12 99816085 99816156 -43970299 + MER94 DNA DNA 2 70 -64 1721 165 4 0 chr12 99816164 99816431 -43970024 + AluJb SINE Alu 1 268 -44 424 262 55 43 chr12 99816548 99816804 -43969651 + L2 LINE L2 2837 3095 -177 955 188 92 66 chr12 99817200 99817504 -43968951 - MER46C DNA MER2_type -6 332 21 1826 147 32 3 chr12 99817504 99817789 -43968666 + AluJb SINE Alu 1 293 -19 468 257 104 27 chr12 99817831 99818014 -43968441 - MIR SINE MIR -2 260 64 350 282 86 8 chr12 99818611 99818728 -43967727 - L2 LINE L2 0 3272 3147 2297 103 0 0 chr12 99819516 99819816 -43966639 - AluSc SINE Alu -9 300 1 360 230 53 53 chr12 99819954 99820067 -43966388 + MLT1J LTR MaLR 391 503 -8 30 0 0 0 chr12 99820960 99820990 -43965465 + AT_rich Low_complexity Low_complexity 1 30 0 1500 173 12 4 chr12 99820997 99821245 -43965210 - AluJo SINE Alu -62 250 1 1409 198 137 20 chr12 99821586 99822031 -43964424 - Charlie5 DNA MER1_type -107 2505 2009 2238 104 3 0 chr12 99822034 99822333 -43964122 - AluY SINE Alu -11 300 1 3213 94 9 0 chr12 99822334 99822770 -43963685 - L1PA15 LINE L1 -6 6159 5720 880 214 42 0 chr12 99823681 99823849 -43962606 + FAM SINE Alu 1 175 0 769 156 17 17 chr12 99823871 99824050 -43962405 + GA-rich Low_complexity Low_complexity 2 180 0 216 307 45 28 chr12 99824650 99824826 -43961629 - L2 LINE L2 -174 3098 2920 2548 53 0 0 chr12 99825251 99825553 -43960902 - AluY SINE Alu -9 302 1 750 126 161 118 chr12 99825564 99825607 -43960848 - L1MB3 LINE L1 -1 6182 6142 552 202 88 18 chr12 99825607 99825721 -43960734 - FLAM_A SINE Alu -11 122 1 750 126 161 118 chr12 99825721 99825735 -43960720 - L1MB3 LINE L1 -41 6142 6130 2173 106 30 0 chr12 99825735 99826036 -43960419 - AluSg SINE Alu 0 310 1 750 126 161 118 chr12 99826036 99826231 -43960224 - L1MB3 LINE L1 -53 6130 5918 345 247 117 12 chr12 99826400 99826440 -43960015 + MIR SINE MIR 81 115 -147 2142 110 0 23 chr12 99826440 99826739 -43959716 - AluSx SINE Alu -20 292 1 345 247 117 12 chr12 99826739 99826860 -43959595 + MIR SINE MIR 115 259 -3 561 181 77 107 chr12 99826981 99827190 -43959265 + L1PA8A LINE L1 5540 5738 -383 477 215 51 25 chr12 99827299 99827457 -43958998 + L1ME4a LINE L1 5959 6120 -1 617 279 86 16 chr12 99827528 99827772 -43958683 + L3 LINE CR1 1090 1350 -227 381 279 16 55 chr12 99828069 99828252 -43958203 + L2 LINE L2 2526 2701 -613 3857 100 57 51 chr12 99828734 99829217 -43957238 + L1MA4A LINE L1 5602 6092 -211 2243 120 0 0 chr12 99829217 99829516 -43956939 + AluSc SINE Alu 1 299 -10 3857 100 57 51 chr12 99829516 99829719 -43956736 + L1MA4A LINE L1 6092 6292 -11 364 244 0 56 chr12 99831160 99831250 -43955205 - L2 LINE L2 -1 3271 3187 2014 145 0 7 chr12 99831252 99831549 -43954906 - AluJo SINE Alu -10 302 8 2011 141 0 20 chr12 99831560 99831865 -43954590 - AluJb SINE Alu -13 299 1 380 288 114 105 chr12 99832128 99832206 -43954249 - L2 LINE L2 0 3272 3196 2301 116 0 0 chr12 99832206 99832517 -43953938 + AluSx SINE Alu 1 311 -1 380 288 114 105 chr12 99832517 99832771 -43953684 - L2 LINE L2 -76 3196 2937 1658 158 42 11 chr12 99833241 99833525 -43952930 - AluJb SINE Alu -19 293 1 260 345 42 5 chr12 99833525 99833716 -43952739 + L1ME LINE L1 5620 5817 -304 526 306 81 12 chr12 99833795 99833968 -43952487 - L2 LINE L2 -25 3247 3063 1920 132 31 10 chr12 99834074 99834363 -43952092 + AluSx SINE Alu 1 295 -17 1270 113 258 48 chr12 99834494 99834804 -43951651 - THE1C LTR MaLR 0 375 1 318 347 48 12 chr12 99834856 99835023 -43951432 - L2 LINE L2 -823 2491 2319 2163 123 0 7 chr12 99835119 99835420 -43951035 + AluSx SINE Alu 1 299 -13 195 330 151 38 chr12 99835740 99835846 -43950609 + L2 LINE L2 3133 3250 -22 369 252 14 79 chr12 99836614 99836753 -43949702 - MER5B DNA MER1_type -45 133 4 181 321 111 0 chr12 99836783 99836864 -43949591 - MIR SINE MIR -59 203 114 1906 181 27 6 chr12 99837638 99837969 -43948486 + MER58B DNA MER1_type 2 339 -2 2422 85 0 0 chr12 99838402 99838697 -43947758 + AluSg SINE Alu 1 295 -15 204 262 65 56 chr12 99839386 99839493 -43946962 + MIR SINE MIR 53 160 -102 391 224 37 19 chr12 99839496 99839603 -43946852 + L1MB8 LINE L1 6068 6176 -2 335 146 0 0 chr12 99839620 99839675 -43946780 + FLAM_A SINE Alu 76 130 -3 796 164 15 8 chr12 99839697 99839831 -43946624 + AluJo SINE Alu 2 136 -176 184 262 0 0 chr12 99840378 99840420 -43946035 + L2 LINE L2 3216 3257 -15 3098 156 60 35 chr12 99840767 99841091 -43945364 + L1 LINE L1 3387 3701 -2445 2201 99 0 3 chr12 99841091 99841427 -43945028 + AluSq SINE Alu 1 335 0 3098 156 60 35 chr12 99841427 99841736 -43944719 + L1 LINE L1 3701 4037 -2109 351 0 0 0 chr12 99842469 99842508 -43943947 + (T)n Simple_repeat Simple_repeat 1 39 0 321 354 76 54 chr12 99843057 99843334 -43943121 + L2 LINE L2 2921 3203 -69 327 333 8 48 chr12 99843858 99843984 -43942471 + MIR3 SINE MIR 15 135 -73 734 274 131 36 chr12 99844004 99844416 -43942039 + MLT1J LTR MaLR 1 451 -60 253 297 31 0 chr12 99844593 99844657 -43941798 + MIR SINE MIR 82 147 -61 427 298 173 12 chr12 99844695 99844863 -43941592 + MIR SINE MIR 20 214 -48 1033 178 114 0 chr12 99844954 99845173 -43941282 - MIR SINE MIR 0 262 19 314 284 54 28 chr12 99846069 99846283 -43940172 + L1MC4a LINE L1 5754 5966 -155 223 271 68 0 chr12 99846452 99846511 -43939944 + L2 LINE L2 3207 3269 -3 678 259 58 10 chr12 99847461 99847666 -43938789 - MIR SINE MIR -1 261 47 2312 123 0 0 chr12 99847994 99848302 -43938153 + AluSx SINE Alu 1 308 -4 2236 92 0 7 chr12 99848302 99848615 -43937840 + AluY SINE Alu 1 311 0 1389 246 124 16 chr12 99848780 99849272 -43937183 + L2 LINE L2 1895 2439 -875 1134 270 48 31 chr12 99849279 99849671 -43936784 + L2 LINE L2 2889 3287 -26 31 44 0 0 chr12 99849888 99849933 -43936522 + AT_rich Low_complexity Low_complexity 1 45 0 365 267 12 0 chr12 99850343 99850429 -43936026 + MIR SINE MIR 176 262 0 1742 162 0 117 chr12 99850519 99850913 -43935542 - MER7A DNA MER2_type 0 346 1 542 226 174 16 chr12 99851259 99851449 -43935006 - MIR SINE MIR -33 229 10 444 290 45 19 chr12 99852085 99852240 -43934215 - L2 LINE L2 -12 3260 3102 1049 258 59 51 chr12 99852251 99852332 -43934123 + L2 LINE L2 2919 2998 -315 2578 175 76 0 chr12 99852332 99852766 -43933689 - MLT1C LTR MaLR 0 467 1 1049 258 59 51 chr12 99852766 99853076 -43933379 + L2 LINE L2 2998 3313 0 233 258 169 8 chr12 99853235 99853359 -43933096 - L2 LINE L2 -1427 1887 1744 5345 158 33 32 chr12 99853723 99854624 -43931831 + L1MA9 LINE L1 4443 5342 -970 1638 175 24 14 chr12 99854624 99854915 -43931540 + AluJo SINE Alu 1 294 -18 5345 158 33 32 chr12 99854915 99855870 -43930585 + L1MA9 LINE L1 5342 6310 -2 356 289 16 15 chr12 99855906 99856053 -43930402 + L1M4 LINE L1 2 428 -6218 4050 229 25 45 chr12 99856346 99857887 -43928568 + L1M4 LINE L1 816 2424 -4222 739 255 111 8 chr12 99858196 99858431 -43928024 + MIR SINE MIR 2 260 -2 312 222 210 0 chr12 99858818 99858899 -43927556 - L2 LINE L2 0 3313 3216 * 381 256 26 34 chr12 99858892 99859009 -43927446 + MIR SINE MIR 137 252 -10 2100 136 0 0 chr12 99859423 99859734 -43926721 + AluSx SINE Alu 1 311 0 1720 134 20 0 chr12 99860502 99860756 -43925699 + AluSq SINE Alu 1 259 -54 360 0 0 0 chr12 99861218 99861258 -43925197 + (T)n Simple_repeat Simple_repeat 1 40 0 879 227 96 5 chr12 99861267 99861487 -43924968 + MIR SINE MIR 19 258 -4 334 300 20 0 chr12 99861647 99861747 -43924708 - MIR SINE MIR -160 102 1 357 285 114 16 chr12 99862162 99862285 -43924170 + MIR SINE MIR 31 165 -97 226 235 118 0 chr12 99862324 99862392 -43924063 + L1MC/D LINE L1 5510 5585 -536 240 246 77 0 chr12 99862416 99862481 -43923974 - MIR SINE MIR -13 249 180 580 194 223 105 chr12 99862564 99862945 -43923510 + MLT1H LTR MaLR 120 545 -4 874 208 64 0 chr12 99862948 99863121 -43923334 - MIR SINE MIR -77 185 2 528 275 34 0 chr12 99863124 99863273 -43923182 + L1MC/D LINE L1 5584 5737 -2071 3972 163 13 2 chr12 99863283 99863920 -43922535 + Tigger1 DNA MER2_type 1 644 -1774 925 84 0 0 chr12 99863915 99864034 -43922421 + Tigger1 DNA MER2_type 1040 1158 -1260 * 6267 111 53 25 chr12 99864030 99864874 -43921581 + Tigger1 DNA MER2_type 1369 2249 -169 2188 87 4 0 chr12 99864874 99865172 -43921283 + AluSp SINE Alu 6 304 0 6267 111 53 25 chr12 99865172 99865347 -43921108 + Tigger1 DNA MER2_type 2249 2418 0 1689 161 10 17 chr12 99865381 99865679 -43920776 + AluJo SINE Alu 1 296 -16 261 0 0 0 chr12 99865679 99865708 -43920747 + (TA)n Simple_repeat Simple_repeat 1 29 0 827 143 0 3 chr12 99866080 99866255 -43920200 + AluJ SINE Alu 84 307 -5 1930 152 109 6 chr12 99866493 99866823 -43919632 - MLT1A1 LTR MaLR 0 365 2 180 288 30 15 chr12 99867081 99867147 -43919308 + MIR SINE MIR 2 68 -194 * 679 247 21 42 chr12 99867137 99867327 -43919128 + L2 LINE L2 3106 3291 -22 200 353 10 49 chr12 99867342 99867444 -43919011 + MER5A DNA MER1_type 49 146 -43 * 402 348 0 29 chr12 99867356 99867494 -43918961 - MER5A DNA MER1_type -48 141 8 223 85 43 0 chr12 99868071 99868118 -43918337 + T-rich Low_complexity Low_complexity 2 50 0 22 56 0 0 chr12 99869087 99869123 -43917332 + GC_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr12 99869256 99869293 -43917162 + GC_rich Low_complexity Low_complexity 1 37 0 1785 97 7 48 chr12 99869697 99870007 -43916448 - AluJb SINE Alu -15 297 1 665 254 43 14 chr12 99871068 99871277 -43915178 - MIR SINE MIR -46 216 2 312 226 12 24 chr12 99871356 99871440 -43915015 + MIR3 SINE MIR 99 181 -27 2114 136 0 10 chr12 99871679 99871989 -43914466 - AluSx SINE Alu -5 307 1 2304 110 0 0 chr12 99872530 99872838 -43913617 - AluSq SINE Alu -5 308 1 540 322 77 0 chr12 99873266 99873474 -43912981 - MIR SINE MIR -11 251 28 234 193 140 0 chr12 99873537 99873594 -43912861 + L1M4c LINE L1 1580 1644 -4740 1039 163 5 37 chr12 99873707 99873897 -43912558 - AluJo SINE Alu -127 185 2 22 0 0 0 chr12 99873989 99874011 -43912444 + AT_rich Low_complexity Low_complexity 1 22 0 276 336 152 0 chr12 99874411 99874536 -43911919 + L2 LINE L2 3125 3268 -4 1458 159 4 4 chr12 99874708 99874941 -43911514 + AluJb SINE Alu 65 297 -15 360 302 19 28 chr12 99875408 99875514 -43910941 - MIR SINE MIR -130 132 28 2011 128 34 0 chr12 99875522 99875818 -43910637 + AluSx SINE Alu 1 306 -6 275 295 13 0 chr12 99876042 99876120 -43910335 + MER117 DNA MER1_type 54 132 -65 281 294 31 55 chr12 99876131 99876294 -43910161 - L2 LINE L2 -458 2856 2698 558 264 76 84 chr12 99876899 99877282 -43909173 + HAL1b LINE L1 86 465 -883 1231 167 5 32 chr12 99877282 99877503 -43908952 + AluJo SINE Alu 84 298 -14 306 0 0 0 chr12 99877505 99877539 -43908916 + (CA)n Simple_repeat Simple_repeat 2 35 0 1485 209 110 54 chr12 99877598 99878153 -43908302 + HAL1b LINE L1 546 1131 -217 300 27 0 0 chr12 99878160 99878197 -43908258 + (TC)n Simple_repeat Simple_repeat 1 37 0 418 218 108 14 chr12 99878200 99878357 -43908098 + HAL1b LINE L1 1184 6119 -2 442 260 46 17 chr12 99878401 99878574 -43907881 + L1ME4a LINE L1 5845 6022 -99 1821 124 3 35 chr12 99878638 99878920 -43907535 + AluSx SINE Alu 1 273 -39 418 156 0 0 chr12 99878922 99878986 -43907469 + Alu SINE Alu 238 301 -11 861 223 0 11 chr12 99878991 99879166 -43907289 + AluJo SINE Alu 1 173 -139 10217 93 8 7 chr12 99879166 99880610 -43905845 + L1P LINE L1 1927 3372 -2774 1802 223 30 90 chr12 99880606 99881325 -43905130 - L1MC5 LINE L1 -759 7202 6525 * 1588 114 0 5 chr12 99881381 99881601 -43904854 + AluSq SINE Alu 76 294 -19 891 213 13 0 chr12 99881791 99881946 -43904509 - FRAM SINE Alu -8 158 2 372 286 89 62 chr12 99882399 99882724 -43903731 - HAL1b LINE L1 -915 433 100 1924 129 0 21 chr12 99882813 99883092 -43903363 - AluSx SINE Alu -39 273 1 1278 165 180 12 chr12 99883376 99883631 -43902824 - AluJo SINE Alu -14 298 1 206 268 0 0 chr12 99883863 99883919 -43902536 + C-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr12 99884400 99884421 -43902034 + AT_rich Low_complexity Low_complexity 1 21 0 370 288 45 0 chr12 99884878 99884989 -43901466 - L2 LINE L2 -9 3263 3148 216 191 64 0 chr12 99885646 99885693 -43900762 - L2 LINE L2 -3 3310 3261 1699 160 11 0 chr12 99885751 99886014 -43900441 + AluJb SINE Alu 1 266 -46 893 264 0 14 chr12 99886415 99886631 -43899824 + MIR SINE MIR 12 224 -38 1603 193 28 3 chr12 99886634 99886924 -43899531 + AluJb SINE Alu 1 297 -15 395 290 174 10 chr12 99887011 99887218 -43899237 - L3 LINE CR1 -9 1568 1328 715 261 28 0 chr12 99887283 99887459 -43898996 + MIR SINE MIR 28 208 -54 236 224 68 141 chr12 99887510 99887627 -43898828 - L3 LINE CR1 -343 1234 1110 231 88 0 0 chr12 99887627 99887661 -43898794 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1850 123 0 35 chr12 99887663 99887948 -43898507 - AluJb SINE Alu -17 295 21 236 224 68 141 chr12 99887948 99887975 -43898480 - L3 LINE CR1 -468 1109 1102 2020 132 54 12 chr12 99887975 99888308 -43898147 + MER7A DNA MER2_type 2 346 0 236 224 68 141 chr12 99888308 99888351 -43898104 - L3 LINE CR1 -475 1102 1057 250 232 21 42 chr12 99888433 99888528 -43897927 - L3 LINE CR1 -569 1008 916 913 207 155 0 chr12 99888529 99888722 -43897733 - MER58A DNA MER1_type -1 223 1 629 308 28 20 chr12 99888779 99889029 -43897426 - L3 LINE CR1 -713 864 613 198 227 23 0 chr12 99889075 99889119 -43897336 + L2 LINE L2 3007 3051 -221 187 133 0 0 chr12 99889274 99889304 -43897151 + MIR SINE MIR 224 253 -9 318 67 0 0 chr12 99889307 99889352 -43897103 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 1669 198 3 7 chr12 99889412 99889705 -43896750 + AluJo SINE Alu 1 292 -20 964 110 0 22 chr12 99890475 99890611 -43895844 - FLAM_C SINE Alu 0 133 1 2339 99 0 3 chr12 99890764 99891067 -43895388 - AluSq SINE Alu -11 302 1 24 53 0 0 chr12 99891693 99891731 -43894724 + AT_rich Low_complexity Low_complexity 1 38 0 1910 161 96 25 chr12 99892144 99892541 -43893914 + LTR2B LTR ERV1 66 490 0 479 233 78 0 chr12 99892580 99892709 -43893746 + MIR SINE MIR 124 262 0 3877 142 65 15 chr12 99893397 99893521 -43892934 + MER50 LTR ERV1 1 117 -617 2088 98 0 4 chr12 99893521 99893798 -43892657 + AluSx SINE Alu 1 276 -36 185 35 69 0 chr12 99893799 99893828 -43892627 + A-rich Low_complexity Low_complexity 3 33 0 3877 142 65 15 chr12 99893828 99894378 -43892077 + MER50 LTR ERV1 116 711 -23 545 86 0 0 chr12 99895114 99895184 -43891271 - THE1C LTR MaLR -305 70 1 815 348 128 18 chr12 99895494 99896180 -43890275 + L3 LINE CR1 815 1576 -1 2227 92 0 4 chr12 99896280 99896581 -43889874 + AluSc SINE Alu 1 300 0 918 123 43 166 chr12 99897144 99897396 -43889059 + L1MB8 LINE L1 5108 5319 -827 2070 147 0 0 chr12 99897396 99897711 -43888744 + AluSx SINE Alu 1 312 0 918 123 43 166 chr12 99897711 99897760 -43888695 + L1MB8 LINE L1 5319 5372 -774 41785 60 6 15 chr12 99897770 99903960 -43882495 + L1PA5 LINE L1 11 6145 -9 3463 221 30 9 chr12 99903963 99904758 -43881697 + L1MB8 LINE L1 5360 6171 -7 755 172 0 0 chr12 99904917 99905033 -43881422 + FLAM_A SINE Alu 1 116 -17 21 0 0 0 chr12 99905034 99905055 -43881400 + AT_rich Low_complexity Low_complexity 1 21 0 2069 130 11 0 chr12 99905093 99905377 -43881078 - AluSx SINE Alu -25 287 1 303 264 212 14 chr12 99905412 99905624 -43880831 + MIR SINE MIR 9 262 0 239 333 0 0 chr12 99906909 99906990 -43879465 - MIR SINE MIR -83 125 45 367 270 102 15 chr12 99907071 99907208 -43879247 + MIR SINE MIR 23 171 -91 527 256 96 9 chr12 99907440 99907659 -43878796 + L1ME4a LINE L1 5882 6119 -2 1496 171 36 36 chr12 99907683 99907992 -43878463 - AluJb SINE Alu -3 309 1 207 302 16 0 chr12 99908837 99908900 -43877555 - MIR3 SINE MIR -43 165 102 193 311 0 0 chr12 99908964 99909025 -43877430 - MIR SINE MIR -108 100 40 2812 13 0 0 chr12 99910421 99910720 -43875735 + AluYa5 SINE Alu 1 299 -12 381 246 42 8 chr12 99910857 99910975 -43875480 + MIR SINE MIR 26 147 -115 2504 86 0 0 chr12 99911255 99911559 -43874896 + AluSq SINE Alu 1 304 -9 2220 135 57 43 chr12 99911579 99912000 -43874455 - MSTA LTR MaLR -1 427 1 25 0 0 0 chr12 99912269 99912294 -43874161 + AT_rich Low_complexity Low_complexity 1 25 0 1972 201 41 73 chr12 99912335 99912359 -43874096 + L1MD3 LINE L1 6589 6612 -1383 2352 97 3 6 chr12 99912359 99912670 -43873785 - AluSg SINE Alu 0 310 1 1972 201 41 73 chr12 99912670 99912736 -43873719 + L1MD3 LINE L1 6612 6679 -1316 198 0 0 0 chr12 99912736 99912758 -43873697 + (CA)n Simple_repeat Simple_repeat 2 23 0 1972 201 41 73 chr12 99912758 99913285 -43873170 + L1MD3 LINE L1 6679 7144 -851 467 238 65 11 chr12 99913427 99913588 -43872867 + L1MD3 LINE L1 7071 7228 -580 626 142 44 18 chr12 99913588 99913701 -43872754 + MLT1F1 LTR MaLR 1 116 -451 1189 198 89 0 chr12 99913706 99913953 -43872502 + L1MD3 LINE L1 7400 7668 -327 2437 118 11 25 chr12 99913998 99914152 -43872303 - MSTB1 LTR MaLR -72 360 205 1764 187 0 0 chr12 99914152 99914451 -43872004 + AluJb SINE Alu 1 299 -13 2437 118 11 25 chr12 99914451 99914661 -43871794 - MSTB1 LTR MaLR -227 205 1 960 171 57 35 chr12 99914661 99914889 -43871566 + L1MD3 LINE L1 7664 7896 -99 2444 90 0 0 chr12 99914889 99915189 -43871266 + AluSx SINE Alu 1 300 -12 1039 159 159 89 chr12 99915755 99916026 -43870429 + AluJo SINE Alu 3 292 -10 1287 221 45 30 chr12 99916123 99916570 -43869885 + MLT1H LTR MaLR 2 549 0 271 221 229 8 chr12 99916599 99916721 -43869734 - L1ME4a LINE L1 -3 6118 5970 375 266 86 76 chr12 99916766 99917056 -43869399 - L1ME4a LINE L1 -222 5899 5607 1115 266 97 40 chr12 99917058 99917079 -43869376 + MLT1L LTR MaLR 23 41 -574 285 29 0 0 chr12 99917079 99917113 -43869342 + (CA)n Simple_repeat Simple_repeat 2 35 0 1115 266 97 40 chr12 99917113 99917637 -43868818 + MLT1L LTR MaLR 41 599 -16 346 302 156 35 chr12 99917890 99918261 -43868194 - L1ME4a LINE L1 -1726 4420 4005 31 88 0 0 chr12 99918284 99918364 -43868091 + AT_rich Low_complexity Low_complexity 1 80 0 2172 119 23 0 chr12 99918787 99919089 -43867366 - AluSx SINE Alu -3 309 1 557 179 166 117 chr12 99919611 99919725 -43866730 - MLT1H LTR MaLR -315 234 127 2149 97 0 11 chr12 99919725 99920003 -43866452 + AluSx SINE Alu 1 275 -37 267 103 0 0 chr12 99920008 99920047 -43866408 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 557 179 166 117 chr12 99920047 99920149 -43866306 - MLT1H LTR MaLR -425 124 1 198 297 178 17 chr12 99920570 99920688 -43865767 + MIR3 SINE MIR 58 194 -14 2054 128 24 3 chr12 99921267 99921564 -43864891 - AluSx SINE Alu -9 303 1 871 273 78 39 chr12 99921566 99921925 -43864530 - L1MC4a LINE L1 -1875 5933 5555 674 156 172 68 chr12 99921925 99922117 -43864338 + MER58C DNA MER1_type 3 214 -1 871 273 78 39 chr12 99922117 99922168 -43864287 - L1MC4a LINE L1 -2253 5555 5507 185 340 0 0 chr12 99922371 99922424 -43864031 - MIR3 SINE MIR -6 202 150 2191 123 3 3 chr12 99922531 99922841 -43863614 + AluSx SINE Alu 1 310 -2 2232 119 3 6 chr12 99923111 99923422 -43863033 + AluSg SINE Alu 1 310 0 224 286 0 0 chr12 99923437 99923493 -43862962 - MIR SINE MIR -123 85 30 4103 175 52 24 chr12 99923910 99924777 -43861678 + L1 LINE L1 4 894 -5955 7350 151 59 11 chr12 99924783 99925413 -43861042 + L1 LINE L1 4502 5100 -1748 2426 147 48 7 chr12 99925413 99925828 -43860627 - MSTB1 LTR MaLR 0 432 1 7350 151 59 11 chr12 99925828 99926567 -43859888 + L1 LINE L1 5100 5937 -911 3501 129 2 4 chr12 99976911 99977423 -43809032 + MER9 LTR ERVK 1 511 0 905 83 29 112 chr12 99977494 99977603 -43808852 - MER53 DNA DNA -1 188 101 2391 78 0 0 chr12 99977603 99977918 -43808537 - AluY SINE Alu 0 315 1 905 83 29 112 chr12 99977918 99978012 -43808443 - MER53 DNA DNA -88 101 1 237 333 0 0 chr12 99978190 99978280 -43808175 + (CA)n Simple_repeat Simple_repeat 1 90 0 340 281 52 3 chr12 99978692 99978867 -43807588 + MIR SINE MIR 2 234 -28 335 213 53 0 chr12 99978968 99979043 -43807412 - MIR SINE MIR -130 132 54 1998 278 80 22 chr12 99979413 99980540 -43805915 + L2 LINE L2 2126 3308 -5 378 143 0 0 chr12 99980680 99980743 -43805712 + (TC)n Simple_repeat Simple_repeat 2 64 0 654 237 46 0 chr12 99980743 99980874 -43805581 - FRAM SINE Alu -38 138 2 2113 101 9 70 chr12 99981629 99981957 -43804498 + AluSq SINE Alu 1 308 -5 2523 81 3 0 chr12 99982211 99982519 -43803936 + AluY SINE Alu 1 309 -2 492 219 55 14 chr12 99982544 99982690 -43803765 - MER104 DNA Tc2 -1 179 28 1922 129 0 18 chr12 99983228 99983500 -43802955 + AluSx SINE Alu 1 267 -45 530 92 11 23 chr12 99983634 99983721 -43802734 - MLT2B1 LTR ERVL 0 520 435 * 968 199 6 6 chr12 99983713 99983884 -43802571 + MLT2B1 LTR ERVL 268 438 -82 471 196 6 143 chr12 99984613 99984681 -43801774 - LTR67 LTR ERVL -8 549 516 713 132 0 0 chr12 99984681 99984787 -43801668 + L1MA3 LINE L1 6200 6305 0 471 196 6 143 chr12 99984787 99984886 -43801569 - LTR67 LTR ERVL -41 516 405 827 259 95 41 chr12 99985257 99985624 -43800831 + L2 LINE L2 2889 3275 -38 542 271 55 22 chr12 99985670 99985851 -43800604 - MIR SINE MIR -74 188 2 882 150 0 0 chr12 99985883 99986016 -43800439 + FLAM_C SINE Alu 1 133 0 217 285 48 82 chr12 99986090 99986297 -43800158 + L2 LINE L2 2066 2265 -1049 2202 136 0 3 chr12 99986353 99986663 -43799792 - AluSx SINE Alu -3 309 1 254 330 59 53 chr12 99986781 99987033 -43799422 + L2 LINE L2 2364 2620 -694 3259 144 67 0 chr12 99987033 99987552 -43798903 - MER41C LTR ERV1 0 554 1 254 330 59 53 chr12 99987552 99987620 -43798835 + L2 LINE L2 2620 2686 -628 1718 181 0 28 chr12 99989032 99989353 -43797102 + AluJo SINE Alu 1 312 0 2234 41 49 0 chr12 99989731 99989997 -43796458 + AluY SINE Alu 1 279 -32 471 186 41 0 chr12 99990150 99990247 -43796208 - Charlie1 DNA MER1_type -263 2498 2398 1832 176 0 0 chr12 99990256 99990545 -43795910 + AluSx SINE Alu 2 290 -22 277 224 59 47 chr12 99991524 99991609 -43794846 - MIR SINE MIR -149 113 28 841 136 0 0 chr12 99991761 99991879 -43794576 + FLAM_C SINE Alu 1 118 -25 279 294 12 0 chr12 99992056 99992141 -43794314 - MIR SINE MIR -6 256 171 39 47 0 35 chr12 99992299 99992347 -43794108 + AT_rich Low_complexity Low_complexity 1 46 -37 2376 77 40 0 chr12 99992347 99992646 -43793809 + AluY SINE Alu 1 311 0 39 47 0 35 chr12 99992646 99992683 -43793772 + AT_rich Low_complexity Low_complexity 46 83 0 2396 103 0 3 chr12 99992899 99993210 -43793245 + AluSx SINE Alu 2 311 -1 268 299 122 0 chr12 99993523 99993630 -43792825 + LTR67 LTR ERVL 412 531 -26 2149 125 3 0 chr12 99993790 99994095 -43792360 - AluSx SINE Alu -6 306 1 299 325 63 48 chr12 99995383 99995651 -43790804 + ERVL LTR ERVL 353 624 -5140 1848 149 54 57 chr12 99996077 99996277 -43790178 - THE1C LTR MaLR 0 375 175 2220 81 13 17 chr12 99996277 99996575 -43789880 - AluSc SINE Alu -11 298 2 1848 149 54 57 chr12 99996575 99996744 -43789711 - THE1C LTR MaLR -200 175 7 1292 300 73 18 chr12 99997042 99997648 -43788807 + ERVL LTR ERVL 1664 2302 -3462 770 213 75 0 chr12 99997648 99997822 -43788633 - MIR SINE MIR -48 214 28 1925 144 21 0 chr12 99997848 99998133 -43788322 + AluJo SINE Alu 1 291 -21 345 290 9 9 chr12 99998142 99998249 -43788206 + ERVL LTR ERVL 5272 5378 -386 472 253 43 86 chr12 99998267 99998500 -43787955 + MIR SINE MIR 3 225 -37 2217 117 3 0 chr12 99998551 99998858 -43787597 - AluSx SINE Alu -4 308 1 883 0 0 18 chr12 99998959 99999068 -43787387 + (TTC)n Simple_repeat Simple_repeat 3 109 0 976 98 30 0 chr12 99999069 99999237 -43787218 - FRAM SINE Alu 0 181 10 2195 129 0 16 chr12 99999436 99999753 -43786702 - AluSx SINE Alu 0 312 1 330 285 46 8 chr12 99999916 100000046 -43786409 + L2 LINE L2 3177 3311 -2 1619 246 137 39 chr12 100000070 100000610 -43785845 - MLT1E LTR MaLR 0 593 1 2323 75 0 4 chr12 100001200 100001506 -43784949 + AluY SINE Alu 1 305 0 2156 80 10 37 chr12 100001516 100001846 -43784609 + AluY SINE Alu 1 311 0 541 195 0 49 chr12 100001924 100002047 -43784408 + MIR SINE MIR 45 161 -101 189 224 17 69 chr12 100002043 100002101 -43784354 - MIR SINE MIR -56 206 152 * 986 202 96 102 chr12 100003472 100003688 -43782767 - LTR16A1 LTR ERVL 0 457 241 1879 133 57 0 chr12 100003688 100003967 -43782488 + AluJb SINE Alu 1 295 -17 986 202 96 102 chr12 100003967 100004172 -43782283 - LTR16A1 LTR ERVL -216 241 36 2169 124 3 0 chr12 100004172 100004470 -43781985 + AluSx SINE Alu 1 299 -13 2374 77 0 3 chr12 100004470 100004780 -43781675 + AluSq SINE Alu 1 309 0 986 202 96 102 chr12 100004780 100004815 -43781640 - LTR16A1 LTR ERVL -419 38 1 2184 129 0 0 chr12 100005220 100005522 -43780933 + AluSx SINE Alu 1 302 -10 438 167 83 21 chr12 100005739 100005835 -43780620 + MIR SINE MIR 64 165 -97 1880 171 0 10 chr12 100005892 100006190 -43780265 - AluJo SINE Alu -17 295 1 611 277 103 50 chr12 100006464 100006803 -43779652 + MLT1J2 LTR MaLR 73 429 -21 2213 118 0 3 chr12 100006970 100007274 -43779181 + AluSg SINE Alu 1 303 -7 320 158 237 0 chr12 100007318 100007394 -43779061 - MER58A DNA MER1_type -1 223 130 878 115 15 0 chr12 100007395 100007525 -43778930 + AluSq/x SINE Alu 5 136 -176 722 221 0 20 chr12 100007542 100007691 -43778764 - MER58A DNA MER1_type 0 146 1 2246 110 0 0 chr12 100008024 100008314 -43778141 - AluSx SINE Alu -22 290 1 287 274 120 51 chr12 100008433 100008550 -43777905 - MIR SINE MIR -124 138 14 700 221 94 6 chr12 100008793 100008974 -43777481 - MIR SINE MIR -2 260 64 2292 109 3 3 chr12 100008975 100009286 -43777169 + AluSq SINE Alu 1 311 -2 363 294 104 14 chr12 100009393 100009604 -43776851 + L2 LINE L2 3080 3309 -4 543 222 25 1 chr12 100009703 100009828 -43776627 + L1M3 LINE L1 5517 5649 -522 2707 138 54 54 chr12 100009872 100010394 -43776061 + L1MB4 LINE L1 5599 6120 -60 2336 102 0 0 chr12 100010394 100010688 -43775767 + AluSx SINE Alu 1 294 -18 2707 138 54 54 chr12 100010688 100010700 -43775755 + L1MB4 LINE L1 6120 6131 -49 1850 153 21 7 chr12 100010700 100010987 -43775468 + AluJb SINE Alu 1 291 -21 2707 138 54 54 chr12 100010987 100011023 -43775432 + L1MB4 LINE L1 6130 6170 -10 2297 104 0 0 chr12 100011673 100011980 -43774475 - AluSx SINE Alu -5 307 1 324 243 136 0 chr12 100012344 100012447 -43774008 + MIR SINE MIR 28 144 -118 1700 164 19 75 chr12 100012504 100012751 -43773704 + MLT1A1 LTR MaLR 1 222 -143 1945 136 27 0 chr12 100012751 100013052 -43773403 + AluSx SINE Alu 1 309 -3 1700 164 19 75 chr12 100013052 100013175 -43773280 + MLT1A1 LTR MaLR 222 350 -15 660 292 165 44 chr12 100014123 100014219 -43772236 - L2 LINE L2 -693 2621 2538 2303 100 0 0 chr12 100014219 100014509 -43771946 + AluSx SINE Alu 2 291 -21 660 292 165 44 chr12 100014509 100015043 -43771412 - L2 LINE L2 -776 2538 1915 523 150 0 0 chr12 100015157 100015237 -43771218 + FLAM_A SINE Alu 43 122 -20 1669 75 0 0 chr12 100015269 100015496 -43770959 - AluY SINE Alu 0 309 83 2120 125 0 0 chr12 100015826 100016134 -43770321 - AluSg SINE Alu 0 308 1 345 355 97 0 chr12 100016157 100016281 -43770174 + L2 LINE L2 3133 3268 -4 1872 164 87 72 chr12 100016426 100016884 -43769571 + MLT1C LTR MaLR 1 465 -2 439 247 117 0 chr12 100017445 100017607 -43768848 - LTR33A LTR ERVL -3 520 340 836 202 64 6 chr12 100017610 100017783 -43768672 - MER20 DNA MER1_type -5 214 32 329 178 306 38 chr12 100017846 100018003 -43768452 - LTR33A LTR ERVL -175 348 150 245 151 19 38 chr12 100018035 100018088 -43768367 - LTR33A LTR ERVL -463 60 9 356 211 118 0 chr12 100018383 100018459 -43767996 + MER69 DNA AcHobo 197 281 -945 1601 297 5 30 chr12 100018462 100018903 -43767552 + MER115 DNA AcHobo 5 434 -259 1793 194 3 0 chr12 100018942 100019251 -43767204 + AluJo SINE Alu 1 310 -2 525 135 0 0 chr12 100019251 100019340 -43767115 + (GA)n Simple_repeat Simple_repeat 1 89 0 219 36 0 0 chr12 100019345 100019373 -43767082 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 2432 192 85 37 chr12 100019373 100020144 -43766311 + MER69 DNA AcHobo 1667 2523 -3 458 239 59 95 chr12 100020912 100021134 -43765321 + HAL1 LINE L1 1 214 -2293 3657 176 131 27 chr12 100021514 100022262 -43764193 + LTR1B LTR ERV1 1 826 0 698 258 32 0 chr12 100022283 100022469 -43763986 - MIR SINE MIR -32 230 39 779 179 70 0 chr12 100022649 100022808 -43763647 + MLT1D LTR MaLR 1 173 -364 482 234 0 0 chr12 100023674 100023768 -43762687 - MER117 DNA MER1_type -36 161 68 829 126 0 0 chr12 100023798 100023940 -43762515 - AluJb SINE Alu 0 313 172 291 218 0 0 chr12 100023940 100023995 -43762460 - MER117 DNA MER1_type -142 55 1 309 238 57 29 chr12 100024216 100024321 -43762134 - MLT1K LTR MaLR -342 246 139 359 253 11 11 chr12 100024508 100024595 -43761860 - MLT1K LTR MaLR -462 126 40 1846 114 28 4 chr12 100025229 100025483 -43760972 + AluSq SINE Alu 1 260 -53 419 280 172 61 chr12 100025548 100025909 -43760546 - MLT1K LTR MaLR -7 581 181 2140 104 3 11 chr12 100026880 100027167 -43759288 + AluSx SINE Alu 1 285 -27 2368 100 3 0 chr12 100027229 100027529 -43758926 - AluSg SINE Alu -9 301 1 470 295 98 8 chr12 100027536 100027770 -43758685 + L1ME4a LINE L1 5864 6118 -3 1701 163 32 7 chr12 100027858 100028135 -43758320 + AluJo SINE Alu 9 292 -20 812 102 47 8 chr12 100028982 100029110 -43757345 + AluJb SINE Alu 1 133 -179 1801 146 20 33 chr12 100030316 100030618 -43755837 - AluJo SINE Alu -14 298 1 645 107 155 10 chr12 100030641 100030744 -43755711 + AluSq/x SINE Alu 2 119 -194 190 0 32 32 chr12 100030744 100030775 -43755680 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1498 117 0 57 chr12 100030786 100031016 -43755439 + AluSg/x SINE Alu 81 297 -13 212 198 73 94 chr12 100031140 100031236 -43755219 + MIR SINE MIR 20 113 -149 26 50 0 0 chr12 100031756 100031796 -43754659 + AT_rich Low_complexity Low_complexity 1 40 0 782 249 116 0 chr12 100031857 100032082 -43754373 - MIR SINE MIR -11 251 1 1089 144 134 25 chr12 100032206 100032407 -43754048 - AluJb SINE Alu -9 303 81 409 265 85 1 chr12 100032460 100032595 -43753860 + MIR SINE MIR 19 160 -48 2420 95 3 0 chr12 100032992 100033298 -43753157 + AluSp SINE Alu 1 307 -6 271 132 0 38 chr12 100033305 100033358 -43753097 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr12 100033365 100033386 -43753069 + AT_rich Low_complexity Low_complexity 1 21 0 2325 88 0 7 chr12 100033540 100033837 -43752618 + AluSg SINE Alu 1 295 -15 1699 170 20 29 chr12 100034664 100034970 -43751485 - AluJo SINE Alu -9 303 1 2996 186 39 30 chr12 100035033 100035071 -43751384 - L1MB7 LINE L1 -34 6150 6114 2141 110 7 0 chr12 100035071 100035361 -43751094 + AluSx SINE Alu 1 292 -20 2996 186 39 30 chr12 100035361 100035960 -43750495 - L1MB7 LINE L1 -70 6114 5507 1818 138 3 24 chr12 100036249 100036545 -43749910 - AluJb SINE Alu -22 290 1 1837 126 61 4 chr12 100036704 100036982 -43749473 - AluSx SINE Alu -18 294 1 2368 68 3 7 chr12 100037176 100037469 -43748986 - AluSg SINE Alu -14 296 5 1578 183 13 30 chr12 100037488 100037789 -43748666 - AluJo SINE Alu -16 296 1 2152 122 0 0 chr12 100039490 100039784 -43746671 - AluSx SINE Alu -18 294 1 1007 77 0 0 chr12 100039968 100040098 -43746357 + AluY SINE Alu 176 305 -6 431 179 0 0 chr12 100040101 100040168 -43746287 + AluJo SINE Alu 108 174 -138 1959 154 3 3 chr12 100040302 100040601 -43745854 + AluJb SINE Alu 1 299 -13 960 182 11 23 chr12 100040605 100040781 -43745674 + FAM SINE Alu 2 175 0 267 323 100 67 chr12 100040792 100041151 -43745304 - L2 LINE L2 -50 3263 2893 236 393 0 9 chr12 100041185 100041292 -43745163 + L2 LINE L2 2942 3047 -225 226 330 80 0 chr12 100041350 100041438 -43745017 + L2 LINE L2 3168 3262 -10 803 241 113 104 chr12 100042027 100042218 -43744237 + L1ME4a LINE L1 5476 5664 -457 1779 141 90 48 chr12 100042218 100042551 -43743904 + MER7A DNA MER2_type 1 345 -1 803 241 113 104 chr12 100042551 100042906 -43743549 + L1ME4a LINE L1 5664 6027 -94 191 341 112 24 chr12 100043467 100043637 -43742818 - MIR SINE MIR -27 235 51 1705 164 19 75 chr12 100044916 100045039 -43741416 - MLT1A1 LTR MaLR -15 350 222 1948 133 27 0 chr12 100045039 100045340 -43741115 - AluSx SINE Alu -3 309 1 1705 164 19 75 chr12 100045340 100045587 -43740868 - MLT1A1 LTR MaLR -143 222 1 361 256 125 17 chr12 100045644 100045783 -43740672 - MIR SINE MIR -63 145 3 2272 104 0 0 chr12 100046111 100046418 -43740037 + AluSx SINE Alu 1 307 -5 1811 150 25 7 chr12 100047104 100047390 -43739065 - AluJb SINE Alu -21 291 1 2132 129 0 0 chr12 100047402 100047697 -43738758 - AluSx SINE Alu -17 295 1 1007 77 0 0 chr12 100047881 100048011 -43738444 + AluY SINE Alu 176 305 -6 431 179 0 0 chr12 100048014 100048081 -43738374 + AluJo SINE Alu 108 174 -138 1959 154 3 3 chr12 100048215 100048514 -43737941 + AluJb SINE Alu 1 299 -13 960 182 11 23 chr12 100048518 100048694 -43737761 + FAM SINE Alu 2 175 0 267 323 100 67 chr12 100048705 100049064 -43737391 - L2 LINE L2 -50 3263 2893 236 393 0 9 chr12 100049098 100049205 -43737250 + L2 LINE L2 2942 3047 -225 226 330 80 0 chr12 100049263 100049351 -43737104 + L2 LINE L2 3168 3262 -10 803 241 113 104 chr12 100049940 100050131 -43736324 + L1ME4a LINE L1 5476 5664 -457 1779 141 90 48 chr12 100050131 100050464 -43735991 + MER7A DNA MER2_type 1 345 -1 803 241 113 104 chr12 100050464 100050819 -43735636 + L1ME4a LINE L1 5664 6027 -94 191 341 112 24 chr12 100051372 100051542 -43734913 - MIR SINE MIR -27 235 51 180 0 0 0 chr12 100051802 100051822 -43734633 + (A)n Simple_repeat Simple_repeat 1 20 0 714 181 17 9 chr12 100051823 100051939 -43734516 + FLAM_C SINE Alu 2 118 -25 2152 134 0 0 chr12 100052043 100052341 -43734114 - AluSx SINE Alu -14 298 1 2387 73 0 3 chr12 100053148 100053449 -43733006 + AluY SINE Alu 3 302 -9 1715 158 0 0 chr12 100054009 100054263 -43732192 + AluSx SINE Alu 1 254 -58 488 235 101 17 chr12 100054496 100054615 -43731840 + FLAM_C SINE Alu 2 130 -3 1517 173 7 47 chr12 100055173 100055473 -43730982 - AluJo SINE Alu -24 288 1 309 325 77 33 chr12 100056513 100056739 -43729716 - MER102a DNA MER1_type -1 329 84 1738 124 36 25 chr12 100056739 100057034 -43729421 + AluSc SINE Alu 1 298 0 22 35 0 0 chr12 100057050 100057079 -43729376 + AT_rich Low_complexity Low_complexity 1 29 0 561 275 124 54 chr12 100057180 100057679 -43728776 + L1ME4a LINE L1 5472 6020 -101 2061 99 41 10 chr12 100057753 100058046 -43728409 - AluSx SINE Alu -10 302 1 916 152 8 0 chr12 100058348 100058480 -43727975 + FLAM_C SINE Alu 1 133 0 1574 200 14 3 chr12 100058515 100058805 -43727650 + AluJo SINE Alu 1 293 -19 969 221 55 24 chr12 100058950 100059240 -43727215 + AluSq SINE Alu 1 299 -14 477 279 52 23 chr12 100059441 100059613 -43726842 + MLT1J2 LTR MaLR 253 429 -21 2233 110 0 7 chr12 100059780 100060090 -43726365 + AluSg SINE Alu 1 308 -2 2188 86 0 36 chr12 100060660 100060964 -43725491 - AluSg SINE Alu -17 293 1 1787 142 30 20 chr12 100060991 100061294 -43725161 + AluJb SINE Alu 1 306 -6 821 143 8 30 chr12 100061311 100061444 -43725011 + AluJb SINE Alu 4 133 -179 2155 120 0 10 chr12 100062229 100062529 -43723926 - AluSx SINE Alu -15 297 1 226 274 40 89 chr12 100062622 100062695 -43723760 + MIR SINE MIR 89 155 -107 1699 185 7 13 chr12 100062695 100062998 -43723457 + AluJb SINE Alu 3 303 -9 226 274 40 89 chr12 100062998 100063048 -43723407 + MIR SINE MIR 155 206 -56 357 97 113 0 chr12 100064308 100064370 -43722085 - MADE1 DNA Mariner 0 80 12 29 47 0 0 chr12 100064437 100064480 -43721975 + AT_rich Low_complexity Low_complexity 1 43 0 774 188 15 0 chr12 100064481 100064614 -43721841 - AluJo SINE Alu -176 136 2 2399 96 3 0 chr12 100065012 100065314 -43721141 - AluSp SINE Alu -10 303 1 558 139 105 0 chr12 100065722 100065808 -43720647 - AluS SINE Alu -217 96 2 21 71 0 0 chr12 100065858 100065900 -43720555 + AT_rich Low_complexity Low_complexity 1 42 0 674 122 0 0 chr12 100065900 100065990 -43720465 + FRAM SINE Alu 59 148 -28 1741 170 0 17 chr12 100066195 100066489 -43719966 - AluJo SINE Alu -21 291 3 2164 122 0 0 chr12 100066703 100066999 -43719456 - AluSx SINE Alu -16 296 1 441 158 98 0 chr12 100067023 100067105 -43719350 - FLAM_A SINE Alu -12 130 41 2375 138 75 29 chr12 100067529 100067942 -43718513 + Tigger4(Zombi) DNA MER2_type 2 433 -2298 413 125 125 50 chr12 100067946 100068026 -43718429 + Tigger4(Zombi) DNA MER2_type 2646 2731 0 2116 127 3 3 chr12 100068545 100068845 -43717610 - AluSc SINE Alu -9 300 1 1325 181 16 12 chr12 100068856 100069104 -43717351 - AluJo SINE Alu -22 290 42 1956 142 35 0 chr12 100069376 100069665 -43716790 - AluJb SINE Alu -13 299 1 509 256 36 45 chr12 100069713 100069936 -43716519 - L1MC5 LINE L1 -823 7138 6918 2511 69 3 0 chr12 100070073 100070377 -43716078 - AluY SINE Alu -6 305 1 1610 167 17 37 chr12 100070695 100070995 -43715460 - AluJo SINE Alu -16 296 3 3300 31 0 0 chr12 100071152 100071512 -43714943 - SVA Other Other -3 1383 1024 520 211 29 0 chr12 100071853 100071957 -43714498 - MIR SINE MIR -102 160 54 2443 76 0 0 chr12 100072066 100072370 -43714085 + AluY SINE Alu 1 304 -7 1308 208 10 20 chr12 100072379 100072673 -43713782 + AluJb SINE Alu 1 291 -21 2416 77 0 3 chr12 100073071 100073371 -43713084 + AluY SINE Alu 1 299 -12 417 239 102 18 chr12 100073645 100073812 -43712643 + L1ME4a LINE L1 5938 6118 -3 1669 166 32 7 chr12 100073900 100074177 -43712278 + AluJo SINE Alu 9 292 -20 362 226 71 0 chr12 100075076 100075160 -43711295 - Charlie8 DNA MER1_type -2258 159 70 257 155 0 69 chr12 100075146 100075204 -43711251 - AluSq SINE Alu -12 289 236 * 1229 140 6 0 chr12 100075211 100075390 -43711065 - AluSq SINE Alu -133 180 1 2381 104 0 0 chr12 100075449 100075758 -43710697 - AluSx SINE Alu -3 309 1 348 145 60 48 chr12 100075778 100075861 -43710594 - MLT1J LTR MaLR -45 466 383 627 249 53 21 chr12 100075914 100076103 -43710352 + MIR SINE MIR 39 233 -29 1849 109 0 4 chr12 100076183 100076431 -43710024 + AluSx SINE Alu 60 306 -6 229 217 72 43 chr12 100077257 100077326 -43709129 - MLT1K LTR MaLR 0 588 518 2045 87 6 140 chr12 100077380 100077738 -43708717 + AluSx SINE Alu 1 310 -2 2038 152 0 0 chr12 100078483 100078785 -43707670 + AluSx SINE Alu 1 302 -10 322 277 119 19 chr12 100078882 100079041 -43707414 - MIR SINE MIR -86 176 2 230 114 0 0 chr12 100079801 100079836 -43706619 + Alu SINE Alu 16 50 -252 2597 58 0 0 chr12 100079903 100080211 -43706244 + AluY SINE Alu 1 308 -3 2082 126 10 0 chr12 100080677 100080970 -43705485 + AluSx SINE Alu 1 296 -16 282 116 0 0 chr12 100080972 100081015 -43705440 + (GGGGA)n Simple_repeat Simple_repeat 4 46 0 1279 181 0 18 chr12 100081021 100081248 -43705207 + AluJo SINE Alu 87 309 -3 308 204 56 0 chr12 100081248 100081356 -43705099 + GA-rich Low_complexity Low_complexity 1 114 0 239 199 23 181 chr12 100081418 100081589 -43704866 - MLT1K LTR MaLR 0 588 445 2156 113 3 0 chr12 100081620 100081913 -43704542 + AluSx SINE Alu 1 294 -18 2006 145 0 0 chr12 100082381 100082671 -43703784 - AluSx SINE Alu -22 290 1 538 321 58 55 chr12 100082814 100083125 -43703330 - L2 LINE L2 -177 3136 2825 573 321 42 19 chr12 100083130 100083182 -43703273 - HERVL LTR ERVL -1160 4604 4555 2145 95 39 3 chr12 100083182 100083466 -43702989 - AluSq SINE Alu -19 294 1 573 321 42 19 chr12 100083466 100083678 -43702777 - HERVL LTR ERVL -1209 4555 4334 498 327 107 20 chr12 100083842 100084492 -43701963 - HERVL LTR ERVL -1556 3929 3175 407 198 173 74 chr12 100084809 100084971 -43701484 - MER5B DNA MER1_type 0 178 1 4368 86 34 14 chr12 100085090 100085674 -43700781 - MER4A LTR ERV1 -4 596 1 435 313 170 57 chr12 100086815 100087045 -43699410 + MIR SINE MIR 2 257 -5 1848 168 0 31 chr12 100087063 100087385 -43699070 - AluJo SINE Alu 0 312 1 571 242 106 6 chr12 100087393 100087554 -43698901 - MER104 DNA MER2_type -3 177 1 886 152 0 0 chr12 100087739 100087864 -43698591 + FLAM_C SINE Alu 1 125 -8 2172 89 3 0 chr12 100089593 100089875 -43696580 - AluSx SINE Alu -9 303 21 6517 84 10 12 chr12 100089906 100090785 -43695670 + L1MA2 LINE L1 5428 6304 0 745 275 162 30 chr12 100090896 100091390 -43695065 + L1ME4a LINE L1 5282 5840 -281 1619 127 21 0 chr12 100091391 100091628 -43694827 + AluJo SINE Alu 1 242 -70 388 307 42 30 chr12 100091750 100091916 -43694539 - MIR SINE MIR -10 252 85 329 216 118 46 chr12 100091940 100091994 -43694461 + L1ME4a LINE L1 5932 5981 -140 1065 212 85 42 chr12 100091994 100092324 -43694131 + MER2 DNA MER2_type 1 344 0 329 216 118 46 chr12 100092324 100092422 -43694033 + L1ME4a LINE L1 5981 6095 -26 1433 187 97 0 chr12 100092839 100093107 -43693348 + AluJo SINE Alu 1 294 -18 1044 288 131 25 chr12 100093402 100094092 -43692363 - L2 LINE L2 -114 3199 2434 21 36 0 0 chr12 100094434 100094462 -43691993 + AT_rich Low_complexity Low_complexity 1 28 0 886 139 7 7 chr12 100094728 100094872 -43691583 + FAM SINE Alu 23 166 -19 1906 141 3 17 chr12 100095177 100095474 -43690981 + AluSq SINE Alu 5 297 -16 284 273 217 12 chr12 100095607 100095768 -43690687 + L2 LINE L2 1898 2091 -1223 620 242 17 83 chr12 100095778 100096018 -43690437 + L2 LINE L2 2256 2479 -835 200 227 0 0 chr12 100096708 100096752 -43689703 + A-rich Low_complexity Low_complexity 1 44 0 1794 143 35 0 chr12 100096772 100096894 -43689561 + AluJb SINE Alu 1 117 -195 228 35 0 0 chr12 100096894 100096923 -43689532 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1794 143 35 0 chr12 100096923 100097086 -43689369 + AluJb SINE Alu 117 296 -16 312 316 26 26 chr12 100097275 100097392 -43689063 + L2 LINE L2 3155 3271 -1 2144 96 33 10 chr12 100097889 100098192 -43688263 - AluY SINE Alu -1 310 1 721 222 142 11 chr12 100098582 100098843 -43687612 + L2 LINE L2 2234 2528 -786 1193 232 172 30 chr12 100098849 100099315 -43687140 + MLT1F LTR MaLR 10 541 -1 479 216 56 56 chr12 100099324 100099486 -43686969 + L2 LINE L2 2555 2716 -598 226 222 32 32 chr12 100099745 100099808 -43686647 + L1MC4 LINE L1 6516 6578 -1464 650 178 18 1 chr12 100099829 100099954 -43686501 + L1MC4a LINE L1 6615 6724 -1084 693 105 0 0 chr12 100099966 100100052 -43686403 + AluSq SINE Alu 2 87 -226 877 99 8 8 chr12 100100052 100100183 -43686272 + AluSp/q SINE Alu 181 311 -2 673 201 22 8 chr12 100100185 100100319 -43686136 + L1MC4 LINE L1 6807 6942 -1100 23 0 0 0 chr12 100100364 100100387 -43686068 + AT_rich Low_complexity Low_complexity 1 23 0 1642 90 0 0 chr12 100100403 100100658 -43685797 + AluSc SINE Alu 82 336 0 1631 192 10 17 chr12 100100665 100100957 -43685498 + AluJo SINE Alu 1 290 -22 2392 79 0 10 chr12 100100967 100101272 -43685183 + AluY SINE Alu 1 302 -9 543 89 78 11 chr12 100101283 100101373 -43685082 + L1M LINE L1 5324 5419 -872 898 182 134 16 chr12 100101375 100101427 -43685028 + AluJo SINE Alu 82 126 -186 2181 113 0 0 chr12 100101427 100101741 -43684714 + AluSq SINE Alu 1 314 0 898 182 134 16 chr12 100101741 100101874 -43684581 + AluJo SINE Alu 126 290 -22 1991 130 46 20 chr12 100101874 100102221 -43684234 + L1MA7 LINE L1 5936 6291 0 1156 147 30 0 chr12 100102225 100102423 -43684032 + AluJb SINE Alu 87 290 -22 2203 242 93 3 chr12 100102461 100103058 -43683397 + L1MC4 LINE L1 6933 7765 -277 2975 146 41 32 chr12 100103058 100103143 -43683312 + MER34 LTR ERV1 5 88 -454 2057 138 30 0 chr12 100103143 100103441 -43683014 + AluJb SINE Alu 1 307 -5 2975 146 41 32 chr12 100103441 100103888 -43682567 + MER34 LTR ERV1 88 542 0 2203 242 93 3 chr12 100103888 100104019 -43682436 + L1MC4 LINE L1 7765 7883 -159 1043 234 110 36 chr12 100104069 100104159 -43682296 + L2 LINE L2 2702 2784 -529 2538 125 67 8 chr12 100104159 100104535 -43681920 + MER48 LTR ERV1 1 398 0 1043 234 110 36 chr12 100104535 100104974 -43681481 + L2 LINE L2 2784 3299 -14 1077 71 21 7 chr12 100105736 100105876 -43680579 + L1PA11 LINE L1 6032 6173 -1 1741 172 0 26 chr12 100106053 100106355 -43680100 - AluJo SINE Alu -18 294 1 658 157 25 107 chr12 100106565 100106626 -43679829 - MER3 DNA MER1_type -16 146 82 1704 147 52 7 chr12 100106626 100106924 -43679531 + AluJb SINE Alu 1 310 0 658 157 25 107 chr12 100106924 100107020 -43679435 - MER3 DNA MER1_type -80 82 1 346 253 65 102 chr12 100107031 100107070 -43679385 + MER102a DNA MER1_type 64 103 -1314 2042 149 3 0 chr12 100107070 100107378 -43679077 + AluSx SINE Alu 1 309 -3 346 253 65 102 chr12 100107378 100107583 -43678872 + MER102a DNA MER1_type 103 299 -31 350 281 54 10 chr12 100107900 100108035 -43678420 - MIR3 SINE MIR -2 206 56 928 269 214 29 chr12 100108130 100108584 -43677871 + MLT1G LTR MaLR 34 571 -19 791 164 39 23 chr12 100108703 100108831 -43677624 + FLAM_A SINE Alu 2 131 -2 1935 140 0 71 chr12 100108831 100108967 -43677488 + AluJb SINE Alu 1 145 -167 2429 100 0 0 chr12 100108967 100109277 -43677178 + AluSx SINE Alu 1 310 -2 2278 109 3 0 chr12 100109277 100109580 -43676875 + AluSx SINE Alu 1 304 -8 1935 140 0 71 chr12 100109580 100109778 -43676677 + AluJb SINE Alu 143 312 0 427 238 139 12 chr12 100110516 100110688 -43675767 + MIR SINE MIR 63 256 -6 213 65 0 0 chr12 100111066 100111097 -43675358 + (TC)n Simple_repeat Simple_repeat 2 32 0 1311 86 0 23 chr12 100111145 100111346 -43675109 - AluSg/x SINE Alu 0 307 111 431 299 1 21 chr12 100111355 100111523 -43674932 + L1ME4a LINE L1 5663 5825 -296 1854 152 10 3 chr12 100111552 100111849 -43674606 + AluJb SINE Alu 1 299 -13 306 0 0 0 chr12 100111951 100111985 -43674470 + (CA)n Simple_repeat Simple_repeat 2 35 0 762 139 17 9 chr12 100111985 100112100 -43674355 - FLAM_C SINE Alu -17 116 1 2248 106 6 10 chr12 100112164 100112476 -43673979 + AluSp SINE Alu 1 311 -2 386 236 71 43 chr12 100112530 100112670 -43673785 + MIR3 SINE MIR 61 204 -4 687 234 0 0 chr12 100112687 100112798 -43673657 + FLAM_A SINE Alu 2 112 -30 300 91 0 0 chr12 100112798 100112842 -43673613 + (CA)n Simple_repeat Simple_repeat 1 44 0 429 291 18 48 chr12 100112913 100113078 -43673377 + MIR SINE MIR 103 262 0 21 0 0 0 chr12 100113158 100113179 -43673276 + AT_rich Low_complexity Low_complexity 1 21 0 1261 149 107 9 chr12 100113223 100113438 -43673017 + MER46A DNA MER2_type 1 236 0 247 162 0 0 chr12 100113464 100113501 -43672954 - MIR SINE MIR -8 254 218 699 159 258 7 chr12 100113505 100113656 -43672799 + MER20 DNA MER1_type 1 189 -30 8306 149 19 6 chr12 100113656 100116089 -43670366 + L1PB2 LINE L1 3688 6151 0 284 188 0 0 chr12 100116101 100116149 -43670306 + MER20 DNA MER1_type 171 218 -1 471 295 20 13 chr12 100116190 100116339 -43670116 - MIR SINE MIR -87 175 26 480 105 0 0 chr12 100116509 100116585 -43669870 + L1PA5 LINE L1 6078 6153 -1 1686 162 13 7 chr12 100116655 100116958 -43669497 + AluJo SINE Alu 7 311 -1 1853 151 0 27 chr12 100116964 100117256 -43669199 + AluJo SINE Alu 1 284 -28 37 0 0 0 chr12 100117257 100117294 -43669161 + AT_rich Low_complexity Low_complexity 1 37 0 445 244 124 94 chr12 100117316 100117340 -43669115 - L1MC/D LINE L1 -2143 5665 5643 2064 108 3 3 chr12 100117340 100117628 -43668827 - AluSc SINE Alu -21 288 1 445 244 124 94 chr12 100117628 100117785 -43668670 - L1MC/D LINE L1 -2165 5643 5492 2341 76 13 7 chr12 100117785 100118089 -43668366 + AluSg SINE Alu 1 306 -4 445 244 124 94 chr12 100118089 100118300 -43668155 - L1MC/D LINE L1 -2316 5492 5260 212 314 116 8 chr12 100118821 100118942 -43667513 - MIR3 SINE MIR -3 205 72 1279 109 0 73 chr12 100119653 100119873 -43666582 + AluJo SINE Alu 5 208 -104 650 196 40 64 chr12 100119876 100119999 -43666456 - L1MC5 LINE L1 -801 7160 7041 1485 150 121 11 chr12 100119999 100120272 -43666183 - AluJo SINE Alu -9 303 1 650 196 40 64 chr12 100120272 100120321 -43666134 - L1MC5 LINE L1 -920 7041 6992 5060 187 99 113 chr12 100120332 100120997 -43665458 - L1MB2 LINE L1 0 6407 5735 219 36 0 0 chr12 100120997 100121025 -43665430 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2296 81 0 0 chr12 100121026 100121309 -43665146 - AluSx SINE Alu -29 283 1 5060 187 99 113 chr12 100121309 100122688 -43663767 - L1MB2 LINE L1 -672 5735 4339 1186 178 5 33 chr12 100122688 100122901 -43663554 - AluJo SINE Alu -105 207 1 5060 187 99 113 chr12 100122901 100123282 -43663173 - L1MB2 LINE L1 -2068 4339 3954 1504 167 58 29 chr12 100123282 100123590 -43662865 + AluSx SINE Alu 1 316 0 5060 187 99 113 chr12 100123590 100123758 -43662697 - L1MB2 LINE L1 -2453 3954 3785 2358 104 0 0 chr12 100123758 100124057 -43662398 - AluSx SINE Alu -13 299 1 5060 187 99 113 chr12 100124057 100124210 -43662245 - L1MB2 LINE L1 -2622 3785 3631 1852 180 0 3 chr12 100124210 100124505 -43661950 + AluSx SINE Alu 1 294 -18 5060 187 99 113 chr12 100124505 100124525 -43661930 - L1MB2 LINE L1 -2776 3631 3612 2182 107 7 17 chr12 100124525 100124825 -43661630 + AluSq SINE Alu 1 297 -16 5060 187 99 113 chr12 100124825 100124848 -43661607 - L1MB2 LINE L1 -2795 3612 3590 1004 126 0 15 chr12 100124848 100124983 -43661472 - FLAM_C SINE Alu 0 133 1 5060 187 99 113 chr12 100124983 100125171 -43661284 - L1MB2 LINE L1 -2817 3590 3401 2213 103 6 13 chr12 100125171 100125482 -43660973 - AluSc SINE Alu 0 309 1 939 213 0 0 chr12 100125484 100125644 -43660811 - FRAM SINE Alu -4 162 3 5060 187 99 113 chr12 100125644 100125819 -43660636 - L1MB2 LINE L1 -3007 3400 3224 2305 105 0 16 chr12 100125819 100126133 -43660322 - AluSg SINE Alu -1 309 1 5060 187 99 113 chr12 100126133 100127014 -43659441 - L1MB2 LINE L1 -3183 3224 2188 815 184 0 29 chr12 100127030 100127166 -43659289 - FLAM_A SINE Alu 0 133 2 700 194 16 139 chr12 100127191 100127443 -43659012 - L1MC5 LINE L1 -1004 6957 6737 678 267 107 11 chr12 100127461 100127483 -43658972 + MIR SINE MIR 52 70 -192 2601 116 36 3 chr12 100127483 100127846 -43658609 - THE1C LTR MaLR 0 375 1 678 267 107 11 chr12 100127846 100128010 -43658445 + MIR SINE MIR 70 256 -6 460 293 161 62 chr12 100128046 100128401 -43658054 - HAL1 LINE L1 -590 1917 1528 1122 114 0 6 chr12 100128412 100128570 -43657885 + FRAM SINE Alu 1 154 -22 426 335 59 25 chr12 100128576 100128812 -43657643 - HAL1 LINE L1 -979 1528 1285 225 243 27 14 chr12 100128926 100129000 -43657455 - L1MEd LINE L1 -5048 1071 997 2325 96 3 0 chr12 100129116 100129407 -43657048 - AluSg SINE Alu -18 292 1 526 184 87 68 chr12 100129670 100129877 -43656578 - HAL1 LINE L1 -94 2413 2203 370 286 116 54 chr12 100130139 100130380 -43656075 + MLT1G1 LTR MaLR 7 262 -333 937 158 18 23 chr12 100130494 100130665 -43655790 - FRAM SINE Alu -7 169 1 1110 274 130 59 chr12 100130853 100130996 -43655459 + MLT1G1 LTR MaLR 36 167 -428 1684 146 13 50 chr12 100130996 100131298 -43655157 - AluSx SINE Alu -8 304 14 1110 274 130 59 chr12 100131298 100131676 -43654779 + MLT1G1 LTR MaLR 167 594 -1 749 243 206 8 chr12 100131855 100132234 -43654221 - L1ME3A LINE L1 -266 5904 5451 502 268 165 25 chr12 100132226 100132469 -43653986 - HAL1 LINE L1 -2126 381 105 * 476 192 34 130 chr12 100132504 100132650 -43653805 + FLAM_A SINE Alu 2 133 0 671 258 90 0 chr12 100133006 100133173 -43653282 + MER58A DNA MER1_type 4 185 -39 342 257 14 0 chr12 100133206 100133276 -43653179 - L1MEd LINE L1 -5488 631 561 291 308 62 15 chr12 100133427 100133557 -43652898 - HAL1 LINE L1 -1158 1349 1214 2057 98 11 7 chr12 100133558 100133833 -43652622 + AluSx SINE Alu 1 276 -36 632 273 92 11 chr12 100133864 100134135 -43652320 - HAL1 LINE L1 -1294 1213 921 502 317 0 14 chr12 100134152 100134297 -43652158 - HAL1 LINE L1 -1622 885 743 21 0 0 0 chr12 100134313 100134334 -43652121 + AT_rich Low_complexity Low_complexity 1 21 0 2403 77 0 10 chr12 100134478 100134776 -43651679 - AluSg SINE Alu -15 295 1 2127 129 0 0 chr12 100134942 100135237 -43651218 - AluSx SINE Alu -17 295 1 1234 199 149 11 chr12 100135240 100135501 -43650954 - AluJo SINE Alu -3 299 3 928 269 214 29 chr12 100135620 100136074 -43650381 - MLT1G LTR MaLR -19 571 34 350 281 54 10 chr12 100136169 100136304 -43650151 + MIR3 SINE MIR 56 206 -2 346 253 65 102 chr12 100136621 100136826 -43649629 - MER102a DNA MER1_type -1118 299 103 2042 149 3 0 chr12 100136826 100137134 -43649321 - AluSx SINE Alu -3 309 1 346 253 65 102 chr12 100137134 100137173 -43649282 - MER102a DNA MER1_type -1314 103 64 658 157 25 107 chr12 100137184 100137280 -43649175 + MER3 DNA MER1_type 1 82 -80 1703 147 52 7 chr12 100137280 100137578 -43648877 - AluJb SINE Alu 0 310 1 658 157 25 107 chr12 100137578 100137639 -43648816 + MER3 DNA MER1_type 82 146 -63 1741 172 0 26 chr12 100137849 100138151 -43648304 + AluJo SINE Alu 1 294 -18 1077 71 21 7 chr12 100138328 100138468 -43647987 - L1PA11 LINE L1 -1 6173 6032 1026 238 110 36 chr12 100139230 100139669 -43646786 - L2 LINE L2 -14 3299 2784 2538 125 67 8 chr12 100139669 100140045 -43646410 - MER48 LTR ERV1 0 398 1 1026 238 110 36 chr12 100140045 100140135 -43646320 - L2 LINE L2 -529 2784 2702 2203 242 93 3 chr12 100140185 100140316 -43646139 - L1MC4 LINE L1 -159 7883 7765 2975 146 41 32 chr12 100140316 100140763 -43645692 - MER34 LTR ERV1 0 542 88 2057 138 30 0 chr12 100140763 100141061 -43645394 - AluJb SINE Alu -5 307 1 2975 146 41 32 chr12 100141061 100141146 -43645309 - MER34 LTR ERV1 -454 88 5 2203 242 93 3 chr12 100141146 100141743 -43644712 - L1MC4 LINE L1 -277 7765 6933 1156 147 30 0 chr12 100141781 100141979 -43644476 - AluJb SINE Alu -22 290 87 1991 130 46 20 chr12 100141983 100142330 -43644125 - L1MA7 LINE L1 0 6291 5936 828 176 134 16 chr12 100142330 100142463 -43643992 - AluJo SINE Alu -22 290 174 279 0 0 0 chr12 100142463 100142494 -43643961 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2180 113 0 0 chr12 100142494 100142777 -43643678 - AluSq SINE Alu -30 283 1 828 176 134 16 chr12 100142777 100142829 -43643626 - AluJo SINE Alu -137 175 82 543 89 78 11 chr12 100142831 100142921 -43643534 - L1MA7 LINE L1 -872 5419 5324 2392 79 0 10 chr12 100142932 100143237 -43643218 - AluY SINE Alu -9 302 1 1631 192 10 17 chr12 100143247 100143539 -43642916 - AluJo SINE Alu -22 290 1 1641 90 0 0 chr12 100143546 100143801 -43642654 - AluSc SINE Alu 0 336 82 23 0 0 0 chr12 100143817 100143840 -43642615 + AT_rich Low_complexity Low_complexity 1 23 0 673 201 22 8 chr12 100143885 100144019 -43642436 - L1MC4 LINE L1 -1100 6942 6807 877 99 8 8 chr12 100144021 100144152 -43642303 - AluSq SINE Alu -2 311 181 693 105 0 0 chr12 100144152 100144238 -43642217 - AluSq SINE Alu -226 87 2 650 178 18 1 chr12 100144250 100144375 -43642080 - L1MC4a LINE L1 -1084 6724 6615 226 222 32 32 chr12 100144396 100144459 -43641996 - L1MC4 LINE L1 -1464 6578 6516 479 216 56 56 chr12 100144718 100144880 -43641575 - L2 LINE L2 -598 2716 2555 1193 232 172 30 chr12 100144889 100145355 -43641100 - MLT1F LTR MaLR -1 541 10 721 222 142 11 chr12 100145361 100145622 -43640833 - L2 LINE L2 -786 2528 2234 2144 96 33 10 chr12 100146012 100146315 -43640140 + AluY SINE Alu 1 310 -1 312 316 26 26 chr12 100146812 100146929 -43639526 - L2 LINE L2 -1 3271 3155 1794 143 35 0 chr12 100147118 100147281 -43639174 - AluJb SINE Alu -16 296 117 228 35 0 0 chr12 100147281 100147310 -43639145 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1794 143 35 0 chr12 100147310 100147432 -43639023 - AluJb SINE Alu -195 117 1 200 227 0 0 chr12 100147452 100147496 -43638959 + T-rich Low_complexity Low_complexity 1 44 0 620 242 17 83 chr12 100148186 100148426 -43638029 - L2 LINE L2 -835 2479 2256 284 273 217 12 chr12 100148436 100148597 -43637858 - L2 LINE L2 -1223 2091 1898 1906 141 3 17 chr12 100148730 100149027 -43637428 - AluSq SINE Alu -16 297 5 886 139 7 7 chr12 100149332 100149476 -43636979 - FAM SINE Alu -19 166 23 21 36 0 0 chr12 100149742 100149770 -43636685 + AT_rich Low_complexity Low_complexity 1 28 0 1007 289 134 25 chr12 100150112 100150801 -43635654 + L2 LINE L2 2434 3199 -114 1433 187 97 0 chr12 100151096 100151364 -43635091 - AluJo SINE Alu -18 294 1 329 216 118 46 chr12 100151781 100151879 -43634576 - L1ME4a LINE L1 -26 6095 5981 1065 212 85 42 chr12 100151879 100152209 -43634246 - MER2 DNA MER2_type 0 344 1 329 216 118 46 chr12 100152209 100152263 -43634192 - L1ME4a LINE L1 -140 5981 5932 388 307 42 30 chr12 100152287 100152453 -43634002 + MIR SINE MIR 85 252 -10 1619 127 21 0 chr12 100152575 100152812 -43633643 - AluJo SINE Alu -70 242 1 745 275 162 30 chr12 100152813 100153307 -43633148 - L1ME4a LINE L1 -281 5840 5282 6517 84 10 12 chr12 100153418 100154297 -43632158 - L1MA2 LINE L1 0 6304 5428 2172 89 3 0 chr12 100154328 100154610 -43631845 + AluSx SINE Alu 21 303 -9 1603 140 57 21 chr12 100156184 100156463 -43629992 - AluJo SINE Alu -23 289 1 2196 121 0 0 chr12 100156555 100156852 -43629603 + AluSx SINE Alu 1 297 -15 1799 155 10 17 chr12 100156961 100157257 -43629198 + AluSx SINE Alu 1 294 -18 194 129 0 0 chr12 100157523 100157554 -43628901 + (A)n Simple_repeat Simple_repeat 1 31 0 2168 99 0 3 chr12 100157907 100158215 -43628240 + AluSx SINE Alu 1 307 0 2061 132 49 37 chr12 100158601 100159009 -43627446 + L1MC3 LINE L1 7373 7785 0 320 346 25 12 chr12 100159686 100159848 -43626607 + LTR67 LTR ERVL 383 546 -11 23 0 0 0 chr12 100159987 100160010 -43626445 + AT_rich Low_complexity Low_complexity 1 23 0 993 285 68 91 chr12 100160517 100161098 -43625357 - L2 LINE L2 -5 3308 2715 845 171 8 0 chr12 100161098 100161227 -43625228 + FLAM_A SINE Alu 3 132 -1 993 285 68 91 chr12 100161227 100161285 -43625170 - L2 LINE L2 -598 2715 2657 2193 107 13 0 chr12 100161285 100161584 -43624871 + AluSx SINE Alu 1 303 -9 2127 122 0 3 chr12 100161590 100161885 -43624570 + AluSg SINE Alu 5 298 -12 993 285 68 91 chr12 100161885 100162023 -43624432 - L2 LINE L2 -661 2652 2522 200 86 29 0 chr12 100162023 100162058 -43624397 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 993 285 68 91 chr12 100162058 100162201 -43624254 - L2 LINE L2 -791 2522 2377 1067 158 119 66 chr12 100162665 100162727 -43623728 - Charlie1 DNA MER1_type -11 2750 2693 1514 64 5 5 chr12 100162727 100162915 -43623540 - AluSq SINE Alu -21 292 105 1067 158 119 66 chr12 100162915 100163016 -43623439 - Charlie1 DNA MER1_type -68 2693 2599 1772 90 38 26 chr12 100163016 100163206 -43623249 - L1MA2 LINE L1 0 6304 6109 2227 108 0 0 chr12 100163206 100163503 -43622952 + AluSg SINE Alu 1 297 -13 1772 90 38 26 chr12 100163503 100163579 -43622876 - L1MA2 LINE L1 -195 6109 6035 1067 158 119 66 chr12 100163579 100163749 -43622706 - Charlie1 DNA MER1_type -162 2599 2398 829 196 0 7 chr12 100163757 100163900 -43622555 + AluJo SINE Alu 2 143 -169 192 152 0 0 chr12 100163954 100163987 -43622468 + (TA)n Simple_repeat Simple_repeat 1 33 0 1351 200 139 10 chr12 100163987 100164297 -43622158 - Charlie1 DNA MER1_type -368 2393 2044 643 237 189 0 chr12 100164268 100164437 -43622018 - Charlie1 DNA MER1_type -2555 206 6 * 200 91 0 30 chr12 100164609 100164642 -43621813 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 281 161 0 18 chr12 100164981 100165037 -43621418 + L1MC5 LINE L1 7729 7783 -178 1714 166 34 20 chr12 100165106 100165401 -43621054 - AluJb SINE Alu -9 303 5 2372 77 10 3 chr12 100165418 100165715 -43620740 - AluY SINE Alu -12 299 1 983 157 52 79 chr12 100165730 100165959 -43620496 - MLT1B LTR MaLR -167 223 1 2129 133 3 0 chr12 100166050 100166351 -43620104 + AluSq SINE Alu 1 302 -11 1168 149 0 0 chr12 100166351 100166526 -43619929 + AluSg/x SINE Alu 134 308 -4 1496 218 28 25 chr12 100166850 100167176 -43619279 + MER7A DNA MER2_type 2 326 -20 324 94 0 0 chr12 100167297 100167350 -43619105 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 2341 122 0 0 chr12 100167657 100167969 -43618486 - AluSx SINE Alu 0 312 1 468 254 0 18 chr12 100167977 100168091 -43618364 + L1ME LINE L1 5520 5631 -490 253 196 0 20 chr12 100168100 100168151 -43618304 - L2 LINE L2 -1 3312 3263 196 200 89 0 chr12 100168240 100168285 -43618170 - L2 LINE L2 -4 3309 3261 2247 99 0 3 chr12 100168455 100168757 -43617698 + AluSq SINE Alu 1 301 -12 293 220 42 85 chr12 100169151 100169269 -43617186 - L2 LINE L2 -26 3246 3134 376 297 81 75 chr12 100169304 100169664 -43616791 - MLT1K LTR MaLR -124 464 103 312 322 27 34 chr12 100169845 100169991 -43616464 + MIR SINE MIR 4 148 -114 2172 110 20 0 chr12 100170023 100170315 -43616140 - AluSx SINE Alu -14 298 1 746 184 54 89 chr12 100170317 100170468 -43615987 - L1MEd LINE L1 -2361 4021 3866 1756 190 0 3 chr12 100170468 100170763 -43615692 + AluSx SINE Alu 1 294 -18 746 184 54 89 chr12 100170763 100170783 -43615672 - L1MEd LINE L1 -2516 3866 3847 2182 107 7 17 chr12 100170783 100171083 -43615372 + AluSq SINE Alu 1 297 -16 746 184 54 89 chr12 100171083 100171106 -43615349 - L1MEd LINE L1 -2535 3847 3825 1004 126 0 15 chr12 100171106 100171241 -43615214 - FLAM_C SINE Alu 0 133 1 746 184 54 89 chr12 100171241 100171428 -43615027 - L1MEd LINE L1 -2557 3825 3675 2239 100 6 13 chr12 100171429 100171740 -43614715 - AluSc SINE Alu 0 309 1 939 213 0 0 chr12 100171742 100171902 -43614553 - FRAM SINE Alu -4 162 3 2407 211 32 67 chr12 100172012 100172072 -43614383 - L1MEd LINE L1 -3267 3115 3054 2304 105 0 16 chr12 100172072 100172387 -43614068 - AluSg SINE Alu 0 310 1 2407 211 32 67 chr12 100172387 100173267 -43613188 - L1MEd LINE L1 -3328 3054 2188 830 176 0 29 chr12 100173287 100173423 -43613032 - FLAM_A SINE Alu 0 133 2 682 198 16 139 chr12 100173448 100173700 -43612755 - L1MC5 LINE L1 -1004 6957 6737 678 267 107 11 chr12 100173718 100173740 -43612715 + MIR SINE MIR 52 70 -192 2601 116 36 3 chr12 100173740 100174103 -43612352 - THE1C LTR MaLR 0 375 1 678 267 107 11 chr12 100174103 100174267 -43612188 + MIR SINE MIR 70 256 -6 448 293 161 62 chr12 100174303 100174658 -43611797 - HAL1 LINE L1 -590 1917 1528 1122 114 0 6 chr12 100174669 100174827 -43611628 + FRAM SINE Alu 1 154 -22 426 335 59 25 chr12 100174833 100175069 -43611386 - HAL1 LINE L1 -979 1528 1285 225 243 27 14 chr12 100175183 100175257 -43611198 - L1MEd LINE L1 -5048 1324 1250 2328 96 3 0 chr12 100175373 100175664 -43610791 - AluSg SINE Alu -18 292 1 546 179 87 68 chr12 100175927 100176134 -43610321 - HAL1 LINE L1 -94 2413 2203 370 286 116 54 chr12 100176396 100176637 -43609818 + MLT1G1 LTR MaLR 7 262 -333 920 160 18 24 chr12 100176751 100176920 -43609535 - FRAM SINE Alu -9 167 1 1110 274 130 59 chr12 100177108 100177251 -43609204 + MLT1G1 LTR MaLR 36 167 -428 1726 149 14 27 chr12 100177251 100177546 -43608909 - AluSx SINE Alu -8 304 14 1110 274 130 59 chr12 100177546 100177924 -43608531 + MLT1G1 LTR MaLR 167 594 -1 749 243 206 8 chr12 100178103 100178482 -43607973 - L1ME3A LINE L1 -266 5904 5451 502 268 165 25 chr12 100178474 100178717 -43607738 - HAL1 LINE L1 -2126 381 105 * 476 192 34 130 chr12 100178752 100178898 -43607557 + FLAM_A SINE Alu 2 133 0 260 206 79 0 chr12 100179174 100179237 -43607218 - L1MEd LINE L1 -5394 978 911 703 261 85 0 chr12 100179253 100179429 -43607026 + MER58A DNA MER1_type 2 192 -32 342 257 14 0 chr12 100179455 100179525 -43606930 - L1MEd LINE L1 -5488 884 814 1243 288 101 93 chr12 100179676 100179807 -43606648 - HAL1 LINE L1 -1158 1349 1221 2068 98 11 7 chr12 100179807 100180082 -43606373 + AluSx SINE Alu 1 276 -36 1243 288 101 93 chr12 100180082 100180727 -43605728 - HAL1 LINE L1 -1286 1221 583 2410 74 0 10 chr12 100180727 100181024 -43605431 - AluSg SINE Alu -16 294 1 1243 288 101 93 chr12 100181024 100181192 -43605263 - HAL1 LINE L1 -1924 583 418 1893 174 0 3 chr12 100181192 100181502 -43604953 - AluJo SINE Alu -3 309 1 1243 288 101 93 chr12 100181502 100181893 -43604562 - HAL1 LINE L1 -2089 418 1 969 145 0 0 chr12 100183089 100183220 -43603235 - FLAM_C SINE Alu -1 132 2 31 58 0 0 chr12 100183419 100183471 -43602984 + AT_rich Low_complexity Low_complexity 1 52 0 180 286 82 0 chr12 100183881 100183930 -43602525 - L2 LINE L2 -5 3267 3215 239 302 70 39 chr12 100184496 100184625 -43601830 - L2 LINE L2 -930 2384 2252 794 160 0 15 chr12 100184731 100184862 -43601593 + FLAM_A SINE Alu 1 129 -4 2139 109 0 10 chr12 100186621 100186923 -43599532 - AluSx SINE Alu -8 304 6 2114 101 45 0 chr12 100188363 100188649 -43597806 - AluSp SINE Alu -14 299 1 2418 77 10 0 chr12 100189053 100189351 -43597104 + AluSx SINE Alu 1 301 -11 924 142 0 22 chr12 100189542 100189676 -43596779 + FLAM_C SINE Alu 1 131 -2 255 61 0 0 chr12 100189705 100189738 -43596717 + (CA)n Simple_repeat Simple_repeat 2 34 0 202 78 16 219 chr12 100191463 100191527 -43594928 - L2 LINE L2 -2 3311 3261 * 257 252 50 101 chr12 100191509 100191668 -43594787 - MIR SINE MIR -29 233 83 2100 87 49 3 chr12 100191888 100192176 -43594279 - AluSx SINE Alu -9 303 3 2452 69 3 22 chr12 100193202 100193519 -43592936 - AluY SINE Alu 0 311 1 1963 123 63 0 chr12 100193519 100193804 -43592651 - AluSg SINE Alu -7 303 1 1824 208 218 20 chr12 100193896 100194391 -43592064 + MLT1E LTR MaLR 1 593 0 27 62 0 0 chr12 100194421 100194469 -43591986 + AT_rich Low_complexity Low_complexity 1 48 0 444 272 80 96 chr12 100194614 100194920 -43591535 + MARNA DNA Mariner 48 346 -240 914 150 0 7 chr12 100194920 100195067 -43591388 + L1PB3 LINE L1 6009 6154 0 444 272 80 96 chr12 100195067 100195198 -43591257 + MARNA DNA Mariner 346 478 -108 1540 180 18 0 chr12 100195198 100195481 -43590974 + L1MB7 LINE L1 5586 5873 -311 293 329 66 36 chr12 100196801 100196968 -43589487 - L2 LINE L2 -219 3053 2882 326 321 157 20 chr12 100197016 100197265 -43589190 - L2 LINE L2 -574 2740 2458 1911 117 35 18 chr12 100197490 100197773 -43588682 + AluSx SINE Alu 1 288 -24 248 245 0 0 chr12 100198732 100198785 -43587670 + MIR SINE MIR 185 237 -25 246 369 27 0 chr12 100198875 100198986 -43587469 - MIR SINE MIR -39 223 110 2113 128 0 7 chr12 100199613 100199918 -43586537 + AluSx SINE Alu 1 303 -9 2250 110 0 10 chr12 100199942 100200075 -43586380 + AluSc SINE Alu 1 134 -175 2342 90 17 3 chr12 100200075 100200376 -43586079 + AluSp SINE Alu 2 306 -7 2250 110 0 10 chr12 100200376 100200543 -43585912 + AluSc SINE Alu 134 298 -11 2238 122 3 0 chr12 100200554 100200866 -43585589 + AluSq SINE Alu 1 313 0 203 156 0 0 chr12 100201408 100201440 -43585015 + T-rich Low_complexity Low_complexity 3 34 0 28 0 0 0 chr12 100202188 100202216 -43584239 + AT_rich Low_complexity Low_complexity 1 28 0 201 277 0 0 chr12 100202233 100202280 -43584175 + GA-rich Low_complexity Low_complexity 4 50 0 2266 108 0 0 chr12 100202408 100202704 -43583751 + AluSx SINE Alu 1 296 -16 227 329 83 8 chr12 100203348 100203493 -43582962 - MIR SINE MIR -45 163 6 2331 101 3 0 chr12 100204030 100204336 -43582119 + AluSx SINE Alu 1 307 -5 1039 50 0 0 chr12 100205730 100205851 -43580604 - L1PA5 LINE L1 0 6154 6034 1467 166 64 0 chr12 100205975 100206240 -43580215 + AluJb SINE Alu 1 282 -30 200 176 59 15 chr12 100206246 100206314 -43580141 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 176 0 20 chr12 100206339 100206390 -43580065 + L2 LINE L2 3221 3270 -43 431 205 36 0 chr12 100206435 100206518 -43579937 + FLAM SINE Alu 40 125 -18 1119 205 79 4 chr12 100206909 100207163 -43579292 + AluJo SINE Alu 2 274 -38 1752 137 25 103 chr12 100207285 100207644 -43578811 - MER7A DNA MER2_type -17 329 1 2249 94 0 10 chr12 100207874 100208172 -43578283 - AluSx SINE Alu -17 295 1 559 312 157 64 chr12 100208552 100209429 -43577026 + L2 LINE L2 2173 3188 -84 2220 113 0 23 chr12 100209429 100209738 -43576717 - AluSx SINE Alu -10 302 1 559 312 157 64 chr12 100209738 100209832 -43576623 + L2 LINE L2 3188 3272 0 388 274 204 18 chr12 100210134 100210360 -43576095 + L2 LINE L2 2476 2743 -571 1945 135 0 26 chr12 100260509 100260812 -43525643 - AluSx SINE Alu -17 295 1 251 28 28 0 chr12 100261346 100261382 -43525073 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 902 185 22 22 chr12 100261406 100261584 -43524871 - L1MB3 LINE L1 -39 6144 5967 186 43 0 0 chr12 100261584 100261607 -43524848 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 950 161 5 62 chr12 100261621 100261814 -43524641 - AluJb SINE Alu -40 272 91 548 220 17 151 chr12 100262046 100262278 -43524177 - MIR SINE MIR -10 252 52 2045 129 0 31 chr12 100262942 100263434 -43523021 - AluSg SINE Alu 0 482 1 5269 58 71 31 chr12 100263557 100264388 -43522067 - SVA Other Other -518 868 5 1816 143 13 51 chr12 100264492 100264806 -43521649 - AluSx SINE Alu -10 302 1 594 286 63 68 chr12 100265033 100265285 -43521170 + MIR SINE MIR 2 252 -10 694 132 26 0 chr12 100265641 100265755 -43520700 - MER41B LTR ERV1 -518 117 1 6821 85 25 10 chr12 100265755 100266695 -43519760 - MER41B-int LTR ERV1 -2 5944 4990 2167 100 20 0 chr12 100266695 100266995 -43519460 + Tigger1 DNA MER2_type 979 1284 -1134 2363 106 3 0 chr12 100267031 100267343 -43519112 + AluSp SINE Alu 1 313 0 1525 85 49 0 chr12 100267347 100267571 -43518884 + Tigger1 DNA MER2_type 1729 1963 -455 279 191 0 48 chr12 100267565 100267628 -43518827 - AluS SINE Alu -10 291 232 * 402 255 7 52 chr12 100267784 100267937 -43518518 + GA-rich Low_complexity Low_complexity 3 148 0 478 251 17 69 chr12 100268106 100268281 -43518174 + MIR SINE MIR 96 261 -1 1876 162 16 7 chr12 100269461 100269769 -43516686 - AluJb SINE Alu -1 311 1 21 36 0 0 chr12 100269893 100269921 -43516534 + AT_rich Low_complexity Low_complexity 1 28 0 222 91 0 0 chr12 100270085 100270118 -43516337 + (GA)n Simple_repeat Simple_repeat 2 34 0 1075 226 28 45 chr12 100270511 100270799 -43515656 - MLT1D LTR MaLR -6 499 217 1784 130 68 14 chr12 100270799 100271091 -43515364 - AluJo SINE Alu -4 308 1 1599 131 15 19 chr12 100271117 100271376 -43515079 - AluJo SINE Alu -13 299 42 21 0 0 0 chr12 100271645 100271666 -43514789 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 0 0 chr12 100271666 100271738 -43514717 - L1MC5 LINE L1 -189 7772 7701 2217 194 39 46 chr12 100271738 100272196 -43514259 + MSTB2 LTR MaLR 1 455 -2 1620 154 61 7 chr12 100272231 100272510 -43513945 + AluJo SINE Alu 1 294 -18 423 250 62 34 chr12 100272515 100272691 -43513764 - L1MC5 LINE L1 -271 7690 7510 692 205 0 31 chr12 100272708 100272835 -43513620 - AluSg/x SINE Alu -15 295 173 2251 107 7 3 chr12 100273068 100273368 -43513087 + AluSx SINE Alu 1 301 -11 284 253 126 0 chr12 100273602 100273689 -43512766 + L2 LINE L2 3171 3268 -4 766 180 0 0 chr12 100273829 100273951 -43512504 + AluJo SINE Alu 15 136 -176 555 118 0 0 chr12 100274694 100274779 -43511676 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 514 63 25 0 chr12 100274761 100274840 -43511615 + (TC)n Simple_repeat Simple_repeat 1 81 0 * 2064 123 0 0 chr12 100274840 100275116 -43511339 - AluSx SINE Alu -36 276 1 280 81 0 0 chr12 100275405 100275442 -43511013 - L2 LINE L2 -14 3299 3263 456 258 182 32 chr12 100275586 100275927 -43510528 - L1MC4a LINE L1 -1673 6135 5744 293 316 226 5 chr12 100276027 100276239 -43510216 - L2 LINE L2 -841 2473 2215 842 216 134 22 chr12 100276398 100276630 -43509825 - MIR SINE MIR 0 262 5 708 151 59 0 chr12 100277407 100277526 -43508929 - MER20 DNA MER1_type 0 219 94 2171 107 13 16 chr12 100277560 100277868 -43508587 - AluSx SINE Alu -5 307 1 1276 184 8 13 chr12 100277904 100278138 -43508317 - AluJo SINE Alu -78 234 2 319 128 0 0 chr12 100278141 100278188 -43508267 - MER20 DNA MER1_type -133 86 40 1001 124 0 0 chr12 100278747 100278876 -43507579 + FLAM_C SINE Alu 3 131 -2 823 157 95 0 chr12 100278946 100279093 -43507362 - FAM SINE Alu -1 48 1 2300 102 3 0 chr12 100279123 100279428 -43507027 + AluSq SINE Alu 1 306 -7 544 137 32 11 chr12 100279626 100279721 -43506734 + AluJb SINE Alu 7 103 -209 1351 119 10 5 chr12 100279821 100280014 -43506441 + AluSg/x SINE Alu 89 282 -30 369 0 0 0 chr12 100280018 100280059 -43506396 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 966 138 0 0 chr12 100280183 100280321 -43506134 - FLAM_C SINE Alu -5 138 1 201 195 0 0 chr12 100282318 100282359 -43504096 + (CA)n Simple_repeat Simple_repeat 2 42 0 1921 147 10 3 chr12 100282611 100282904 -43503551 + AluJb SINE Alu 1 295 -17 1792 161 0 28 chr12 100284028 100284345 -43502110 + AluJo SINE Alu 3 310 -2 2974 79 0 13 chr12 100284644 100285023 -43501432 + THE1C LTR MaLR 2 375 0 1855 174 0 3 chr12 100285592 100285885 -43500570 + AluJb SINE Alu 1 292 -20 27 0 0 0 chr12 100285885 100285912 -43500543 + AT_rich Low_complexity Low_complexity 1 27 0 2434 100 0 0 chr12 100289178 100289488 -43496967 - AluSg SINE Alu 0 310 1 315 327 20 10 chr12 100289832 100289933 -43496522 + MER5B DNA MER1_type 46 147 -31 846 159 0 0 chr12 100290949 100291081 -43495374 + FLAM_C SINE Alu 2 133 0 618 152 38 8 chr12 100291082 100291214 -43495241 + L1MB2 LINE L1 6036 6171 0 185 256 186 12 chr12 100291576 100291662 -43494793 + MIR3 SINE MIR 74 174 -34 321 227 67 0 chr12 100291776 100291851 -43494604 + L2 LINE L2 3192 3271 -42 2306 108 7 0 chr12 100292506 100292812 -43493643 - AluSx SINE Alu -4 308 1 198 0 0 0 chr12 100294321 100294343 -43492112 + (A)n Simple_repeat Simple_repeat 1 22 0 2310 91 3 0 chr12 100295079 100295387 -43491068 - AluY SINE Alu -2 309 1 252 0 0 0 chr12 100295390 100295418 -43491037 + (T)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr12 100295718 100295749 -43490706 + AT_rich Low_complexity Low_complexity 1 31 0 2465 70 0 10 chr12 100296032 100296331 -43490124 + AluSg SINE Alu 1 296 -14 1809 166 0 17 chr12 100296582 100296884 -43489571 + AluJo SINE Alu 5 301 -11 2414 91 3 0 chr12 100296886 100297194 -43489261 + AluSp SINE Alu 1 309 -4 2906 124 25 8 chr12 100299468 100299951 -43486504 - L1MB2 LINE L1 -2 6169 5679 205 256 105 68 chr12 100301072 100301205 -43485250 - MIR SINE MIR -123 139 2 696 206 0 29 chr12 100301280 100301416 -43485039 - FLAM_A SINE Alu -1 132 1 221 333 125 0 chr12 100301432 100301528 -43484927 + MIR SINE MIR 34 141 -67 1680 96 8 64 chr12 100301763 100302014 -43484441 + AluSx SINE Alu 43 279 -33 2022 142 3 0 chr12 100302684 100302972 -43483483 + AluJb SINE Alu 1 289 -23 186 43 0 0 chr12 100303314 100303337 -43483118 + (CA)n Simple_repeat Simple_repeat 1 23 0 1721 171 3 33 chr12 100303360 100303665 -43482790 + AluJb SINE Alu 1 296 -16 1317 263 234 28 chr12 100303683 100304457 -43481998 - L2 LINE L2 -41 3272 2659 2242 98 0 3 chr12 100304457 100304744 -43481711 + AluSx SINE Alu 1 286 -26 1317 263 234 28 chr12 100304744 100304976 -43481479 - L2 LINE L2 -654 2659 1943 377 220 102 43 chr12 100306672 100306858 -43479597 - L1ME4a LINE L1 0 6121 5925 519 264 180 9 chr12 100307070 100307382 -43479073 - L1ME4a LINE L1 -439 5682 5308 2407 231 70 22 chr12 100307493 100307615 -43478840 - L1ME3A LINE L1 -8 6162 6047 2118 144 0 3 chr12 100307615 100307920 -43478535 + AluJb SINE Alu 5 308 -4 2407 231 70 22 chr12 100307920 100308689 -43477766 - L1ME3A LINE L1 -123 6047 5230 1558 133 122 12 chr12 100308737 100308992 -43477463 + AluSg SINE Alu 19 301 -9 1418 190 52 21 chr12 100308998 100309287 -43477168 + AluJo SINE Alu 1 298 -14 1149 160 19 0 chr12 100309322 100309528 -43476927 - MER2 DNA MER2_type -135 210 1 1693 247 60 44 chr12 100309560 100310243 -43476212 - L1ME3A LINE L1 -935 5211 4518 767 261 42 42 chr12 100310459 100310720 -43475735 + MIR SINE MIR 2 262 0 2231 102 0 30 chr12 100310883 100311188 -43475267 - AluSq SINE Alu -17 296 1 320 208 158 62 chr12 100311197 100311438 -43475017 - L1ME3A LINE L1 -2930 3216 2953 610 269 16 36 chr12 100311563 100311756 -43474699 + LTR33 LTR ERVL 76 264 -257 988 154 19 6 chr12 100311756 100311918 -43474537 - FRAM SINE Alu -15 161 1 1825 113 34 40 chr12 100312232 100312558 -43473897 - MER1B DNA MER1_type -15 324 1 1938 75 0 12 chr12 100312741 100313027 -43473428 + AluY SINE Alu 32 314 0 288 0 0 0 chr12 100313199 100313231 -43473224 + (A)n Simple_repeat Simple_repeat 1 32 0 1405 178 4 41 chr12 100313287 100313557 -43472898 + AluJo SINE Alu 44 303 -9 1430 184 74 15 chr12 100314612 100314765 -43471690 - AluJb SINE Alu -25 287 144 2462 77 0 16 chr12 100314765 100315078 -43471377 - AluSq SINE Alu -5 308 1 1430 184 74 15 chr12 100315078 100315195 -43471260 - AluJb SINE Alu -168 144 1 31 68 0 0 chr12 100315907 100315966 -43470489 + AT_rich Low_complexity Low_complexity 1 59 0 1658 213 7 0 chr12 100316159 100316460 -43469995 + AluJb SINE Alu 1 303 -9 224 330 175 10 chr12 100316824 100316921 -43469534 + MIR SINE MIR 17 129 -79 2036 118 3 48 chr12 100317245 100317560 -43468895 + AluSx SINE Alu 1 301 -11 723 128 23 15 chr12 100317843 100317976 -43468479 - FRAM SINE Alu -1 175 42 25 0 0 0 chr12 100318011 100318036 -43468419 + AT_rich Low_complexity Low_complexity 1 25 0 1929 160 0 16 chr12 100320225 100320538 -43465917 - AluJb SINE Alu 0 312 5 2165 119 7 7 chr12 100320826 100321136 -43465319 - AluSx SINE Alu -2 310 1 248 227 15 15 chr12 100321176 100321242 -43465213 + (TA)n Simple_repeat Simple_repeat 1 66 0 585 235 99 9 chr12 100321403 100321624 -43464831 - L1MC/D LINE L1 -2249 5559 5319 2169 87 0 23 chr12 100321719 100322029 -43464426 - AluSp SINE Alu -10 303 1 212 59 29 0 chr12 100322087 100322121 -43464334 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5895 45 36 23 chr12 100322121 100322906 -43463549 - SVA Other Other -16 1370 576 293 167 0 0 chr12 100323577 100323631 -43462824 + Charlie1 DNA MER1_type 88 141 -2620 * 1818 193 64 15 chr12 100323622 100324155 -43462300 + Charlie1 DNA MER1_type 2203 2761 0 835 147 0 0 chr12 100325175 100325304 -43461151 + FLAM_A SINE Alu 4 132 -1 1361 202 70 37 chr12 100325344 100325671 -43460784 + MER58B DNA MER1_type 1 338 -3 24 53 0 0 chr12 100325972 100326010 -43460445 + AT_rich Low_complexity Low_complexity 1 38 0 219 114 0 0 chr12 100326361 100326396 -43460059 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1372 31 0 0 chr12 100326530 100326691 -43459764 - L1PA3 LINE L1 0 6155 5995 2280 111 3 13 chr12 100326752 100327067 -43459388 - AluSx SINE Alu 0 312 1 779 249 104 0 chr12 100327285 100327474 -43458981 - MIR SINE MIR -17 245 28 2208 117 0 0 chr12 100327474 100327774 -43458681 - AluSq SINE Alu -12 301 2 779 249 104 0 chr12 100327774 100327805 -43458650 - MIR SINE MIR -234 28 2 2482 70 0 0 chr12 100329147 100329447 -43457008 + AluSq SINE Alu 1 300 -13 447 286 60 0 chr12 100329451 100329584 -43456871 - MIR SINE MIR -117 145 5 180 0 0 0 chr12 100330092 100330112 -43456343 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 784 171 0 0 chr12 100330282 100330405 -43456050 + FLAM_C SINE Alu 1 123 -10 1333 201 58 43 chr12 100330440 100330741 -43455714 - AluJb SINE Alu 0 305 1 2254 118 13 0 chr12 100330801 100331107 -43455348 - AluSx SINE Alu -2 310 1 2308 80 0 3 chr12 100331895 100332194 -43454261 - AluSg SINE Alu -12 298 1 2269 88 7 0 chr12 100332517 100332813 -43453642 - AluSp SINE Alu -15 298 1 204 200 0 0 chr12 100333009 100333044 -43453411 + MIR SINE MIR 217 251 -11 506 301 13 19 chr12 100333295 100333451 -43453004 + MER5A DNA MER1_type 32 186 -3 399 312 2 0 chr12 100334443 100334544 -43451911 - MIR SINE MIR -103 105 4 182 189 0 75 chr12 100335251 100335304 -43451151 - MIR SINE MIR -50 212 164 704 210 68 0 chr12 100335893 100336055 -43450400 - MIR SINE MIR 0 262 90 2105 148 0 0 chr12 100336594 100336899 -43449556 - AluSx SINE Alu -5 307 3 2336 105 3 0 chr12 100337900 100338206 -43448249 - AluSx SINE Alu -5 307 1 321 301 0 11 chr12 100338315 100338408 -43448047 + MIR SINE MIR 94 185 -77 467 358 35 56 chr12 100338547 100338832 -43447623 + L2 LINE L2 2968 3246 -26 1748 199 0 3 chr12 100339863 100340165 -43446290 + AluJo SINE Alu 2 302 -10 1927 167 13 0 chr12 100340931 100341231 -43445224 - AluJb SINE Alu -8 304 1 1872 151 43 0 chr12 100341355 100341654 -43444801 - AluJb SINE Alu 0 312 1 23 0 0 0 chr12 100342072 100342095 -43444360 + AT_rich Low_complexity Low_complexity 1 23 0 218 261 0 0 chr12 100343717 100343763 -43442692 - L2 LINE L2 -17 3255 3210 21 0 0 0 chr12 100343890 100343911 -43442544 + AT_rich Low_complexity Low_complexity 1 21 0 1825 149 4 11 chr12 100344233 100344509 -43441946 + AluJb SINE Alu 1 274 -38 2433 53 0 10 chr12 100344707 100345006 -43441449 + AluY SINE Alu 1 296 -15 186 43 0 0 chr12 100346338 100346361 -43440094 + (TA)n Simple_repeat Simple_repeat 2 24 0 242 287 16 8 chr12 100346832 100346954 -43439501 + T-rich Low_complexity Low_complexity 3 125 0 407 73 176 0 chr12 100347319 100347387 -43439068 + MADE1 DNA Mariner 1 80 0 1967 112 40 4 chr12 100347555 100347833 -43438622 + AluSc SINE Alu 1 288 -21 2157 91 0 4 chr12 100348053 100348328 -43438127 + AluSc SINE Alu 12 285 -24 342 0 0 0 chr12 100348338 100348376 -43438079 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2171 111 3 0 chr12 100349055 100349343 -43437112 - AluSx SINE Alu -14 298 10 368 192 0 0 chr12 100349477 100349555 -43436900 - L1PB4 LINE L1 -7 6149 6072 1003 117 7 0 chr12 100349558 100349712 -43436743 + MER2 DNA MER2_type 41 195 -150 352 233 14 0 chr12 100349753 100349826 -43436629 + MER2 DNA MER2_type 269 342 -3 339 25 0 0 chr12 100349919 100349959 -43436496 + (TG)n Simple_repeat Simple_repeat 2 41 0 2238 108 0 0 chr12 100350671 100350966 -43435489 - AluSx SINE Alu -17 295 1 319 302 208 20 chr12 100352451 100352653 -43433802 - MIR SINE MIR -18 244 5 1761 160 27 3 chr12 100352760 100353060 -43433395 + AluJb SINE Alu 1 307 -5 1986 229 45 4 chr12 100353299 100353811 -43432644 - MER82 DNA MER2_type -1 652 120 900 296 4 0 chr12 100354465 100354691 -43431764 + MIR SINE MIR 18 244 -18 343 238 137 8 chr12 100354902 100355077 -43431378 - MIR SINE MIR -52 210 19 534 328 114 47 chr12 100355192 100355509 -43430946 - L2 LINE L2 -30 3242 2905 499 297 42 0 chr12 100355519 100355637 -43430818 - L2 LINE L2 -6 3266 3144 1208 293 79 14 chr12 100355686 100355799 -43430656 - L2 LINE L2 -35 3278 3174 1514 166 61 24 chr12 100355799 100356095 -43430360 + AluJo SINE Alu 1 307 -5 1208 293 79 14 chr12 100356095 100356425 -43430030 - L2 LINE L2 -139 3174 2806 388 329 56 25 chr12 100356478 100356658 -43429797 + L1ME LINE L1 3208 3402 -2744 1460 167 94 11 chr12 100356658 100356934 -43429521 - AluJb SINE Alu -13 299 1 388 329 56 25 chr12 100356934 100357039 -43429416 + L1ME LINE L1 3402 3502 -2644 231 247 52 65 chr12 100357047 100357201 -43429254 + L1MC/D LINE L1 5780 5931 -1877 241 346 0 0 chr12 100357222 100357323 -43429132 + (TA)n Simple_repeat Simple_repeat 2 102 0 403 313 26 75 chr12 100357534 100357799 -43428656 + L1ME LINE L1 3595 3846 -2300 1868 138 10 10 chr12 100358082 100358379 -43428076 + AluSx SINE Alu 1 297 -15 1736 118 86 25 chr12 100359209 100359488 -43426967 + AluSq SINE Alu 1 296 -17 360 290 190 43 chr12 100359653 100359667 -43426788 + L1ME LINE L1 5317 5328 -836 661 110 0 10 chr12 100359667 100359767 -43426688 + HY3 scRNA scRNA 1 99 -2 360 290 190 43 chr12 100359767 100360121 -43426334 + L1ME LINE L1 5328 5739 -425 2150 127 3 13 chr12 100360151 100360466 -43425989 - AluJb SINE Alu 0 312 1 360 264 111 115 chr12 100360744 100361005 -43425450 + L2 LINE L2 2379 2638 -676 361 329 76 9 chr12 100361021 100361364 -43425091 + L1ME4a LINE L1 5568 5933 -188 449 304 155 0 chr12 100361532 100361713 -43424742 + MIR SINE MIR 34 242 -20 354 262 243 33 chr12 100361889 100362099 -43424356 + MIR SINE MIR 3 256 -6 2339 83 0 3 chr12 100362683 100362983 -43423472 + AluSp SINE Alu 1 299 -14 1332 140 4 26 chr12 100362998 100363227 -43423228 - MER46A DNA MER2_type -10 226 3 1491 170 50 18 chr12 100363503 100363780 -43422675 - AluJo SINE Alu -26 286 1 1187 289 105 16 chr12 100363813 100364359 -43422096 + L2 LINE L2 2417 3117 -196 329 176 0 12 chr12 100364365 100364450 -43422005 + (CA)n Simple_repeat Simple_repeat 2 85 0 642 213 35 40 chr12 100364497 100364699 -43421756 + L2 LINE L2 3112 3312 -1 341 315 56 37 chr12 100364959 100365121 -43421334 - L1MEd LINE L1 -5327 792 628 1174 185 21 0 chr12 100365187 100365376 -43421079 + AluJo SINE Alu 93 285 -27 198 0 0 0 chr12 100365376 100365398 -43421057 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1868 140 65 0 chr12 100365446 100365724 -43420731 - AluSx SINE Alu -16 296 1 195 42 0 0 chr12 100365835 100365859 -43420596 + (TA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr12 100366689 100366711 -43419744 + AT_rich Low_complexity Low_complexity 1 22 0 214 339 16 48 chr12 100367753 100367877 -43418578 - L2 LINE L2 -2880 434 315 339 83 0 0 chr12 100368569 100368617 -43417838 - MADE1 DNA Mariner -1 79 32 326 68 0 0 chr12 100368618 100368662 -43417793 + AluY SINE Alu 1 44 -257 2070 72 30 4 chr12 100368741 100369004 -43417451 + AluY SINE Alu 35 304 -7 257 103 0 0 chr12 100369004 100369043 -43417412 - MADE1 DNA Mariner -41 39 1 1857 164 7 7 chr12 100369057 100369367 -43417088 + AluJb SINE Alu 1 310 -2 419 243 36 18 chr12 100369533 100369644 -43416811 + MIR SINE MIR 45 157 -105 2382 99 3 6 chr12 100370033 100370345 -43416110 - AluSx SINE Alu -1 311 1 671 137 23 8 chr12 100371229 100371360 -43415095 - L1MB3 LINE L1 -7 6176 6044 1522 164 68 11 chr12 100371367 100371630 -43414825 - AluJb SINE Alu -8 304 27 963 134 6 30 chr12 100372985 100373135 -43413320 + FRAM SINE Alu 1 153 -159 393 39 0 0 chr12 100373135 100373186 -43413269 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 839 439 123 4 chr12 100373189 100373458 -43412997 + AluY SINE Alu 1 301 0 1211 195 93 43 chr12 100373783 100374203 -43412252 - L1MD3 LINE L1 0 8039 7613 235 214 29 14 chr12 100374221 100374291 -43412164 - L1MC4 LINE L1 -741 7301 7231 1111 248 95 8 chr12 100374301 100374660 -43411795 + L1ME1 LINE L1 5609 5998 -168 233 143 24 0 chr12 100374675 100374717 -43411738 - L1MC4a LINE L1 -1083 6725 6683 556 210 0 0 chr12 100374719 100374819 -43411636 + U6 snRNA snRNA 7 106 -1 238 135 39 0 chr12 100374836 100374888 -43411567 - L1MC4 LINE L1 -1341 6701 6648 1495 146 138 4 chr12 100375003 100375256 -43411199 + AluJb SINE Alu 1 287 -15 209 182 0 0 chr12 100375256 100375289 -43411166 + (TG)n Simple_repeat Simple_repeat 2 34 0 312 208 47 4 chr12 100375340 100375463 -43410992 + MER5A DNA MER1_type 14 183 -6 790 194 26 0 chr12 100375510 100375665 -43410790 - MER58A DNA MER1_type -38 186 28 1826 161 0 37 chr12 100375798 100376120 -43410335 - AluSx SINE Alu -2 310 1 314 176 147 69 chr12 100376205 100376307 -43410148 - MER63 DNA MER1_type -302 759 650 336 195 300 50 chr12 100376465 100376569 -43409886 - MIR SINE MIR -12 250 173 2280 117 0 0 chr12 100376569 100376867 -43409588 - AluSg SINE Alu -12 298 1 2289 110 7 3 chr12 100376868 100377168 -43409287 - AluSg SINE Alu -9 301 1 336 195 300 50 chr12 100377168 100377261 -43409194 - MIR SINE MIR -88 174 1 246 295 33 0 chr12 100377689 100377750 -43408705 - L2 LINE L2 -5 3267 3205 1814 146 18 11 chr12 100377925 100378205 -43408250 - AluJb SINE Alu -30 282 1 358 158 131 16 chr12 100378626 100378747 -43407708 + L1ME3 LINE L1 6023 6163 -1 651 325 62 43 chr12 100378878 100379184 -43407271 - LTR67 LTR ERVL -8 549 227 2250 82 0 3 chr12 100379184 100379478 -43406977 - AluSg SINE Alu -17 293 1 651 325 62 43 chr12 100379478 100379701 -43406754 - LTR67 LTR ERVL -330 227 10 2286 116 0 0 chr12 100380678 100380988 -43405467 + AluSx SINE Alu 3 312 0 1284 355 7 57 chr12 100381856 100382187 -43404268 + AluSx SINE Alu 1 316 0 216 0 0 0 chr12 100382486 100382510 -43403945 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 273 268 31 87 chr12 100382578 100382705 -43403750 - L2 LINE L2 -2 3311 3192 23 33 0 0 chr12 100383458 100383488 -43402967 + AT_rich Low_complexity Low_complexity 1 30 0 1032 178 27 5 chr12 100383750 100383935 -43402520 - MER5A DNA MER1_type 0 189 1 186 103 0 0 chr12 100384165 100384194 -43402261 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr12 100386578 100386601 -43399854 + AT_rich Low_complexity Low_complexity 1 23 0 192 338 20 88 chr12 100386666 100386814 -43399641 - MER5A DNA MER1_type 0 189 52 2316 75 0 7 chr12 100386977 100387269 -43399186 + AluY SINE Alu 1 290 -21 1461 183 20 6 chr12 100389708 100390035 -43396420 - L1MB7 LINE L1 -15 6174 5850 1954 135 4 0 chr12 100390065 100390346 -43396109 + AluSx SINE Alu 2 283 -29 189 0 0 0 chr12 100390346 100390367 -43396088 + (TA)n Simple_repeat Simple_repeat 1 21 0 499 111 11 11 chr12 100390597 100390687 -43395768 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 358 264 16 31 chr12 100390874 100391003 -43395452 - L2 LINE L2 -995 2319 2193 2121 130 0 7 chr12 100391875 100392174 -43394281 - AluSx SINE Alu -15 297 1 545 301 40 17 chr12 100392275 100392451 -43394004 - MIR3 SINE MIR -13 195 16 2655 142 174 13 chr12 100392464 100392835 -43393620 - L1MB3 LINE L1 0 6183 5873 273 75 0 0 chr12 100392835 100392875 -43393580 + (CA)n Simple_repeat Simple_repeat 2 41 0 2655 142 174 13 chr12 100392875 100393054 -43393401 - L1MB3 LINE L1 -310 5873 5544 759 165 50 8 chr12 100393073 100393194 -43393261 - FLAM_C SINE Alu -16 127 2 387 0 0 0 chr12 100393204 100393247 -43393208 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 214 376 38 3 chr12 100393291 100393410 -43393045 + MIR SINE MIR 57 132 -76 2267 100 13 0 chr12 100393599 100393899 -43392556 - AluSx SINE Alu -8 304 1 615 140 32 0 chr12 100394526 100394619 -43391836 - FRAM SINE Alu -16 160 65 2189 112 3 3 chr12 100394697 100395000 -43391455 - AluSx SINE Alu -9 303 1 3576 29 2 7 chr12 100395392 100395802 -43390653 - L1PA3 LINE L1 -5 6150 5743 2189 132 0 0 chr12 100395947 100396250 -43390205 + AluSx SINE Alu 1 303 -9 1806 149 3 10 chr12 100397353 100397642 -43388813 + AluJo SINE Alu 1 287 -25 3463 167 32 44 chr12 100397642 100398107 -43388348 + L1MB8 LINE L1 5050 5498 -680 2306 113 0 3 chr12 100398107 100398417 -43388038 - AluSg SINE Alu -1 309 1 3463 167 32 44 chr12 100398417 100398864 -43387591 + L1MB8 LINE L1 5498 5949 -229 1197 173 95 20 chr12 100398876 100399002 -43387453 - Ricksha DNA DNA -7 3247 3132 2284 118 0 0 chr12 100399002 100399306 -43387149 + AluSq SINE Alu 1 304 -9 1197 173 95 20 chr12 100399306 100399535 -43386920 - Ricksha DNA DNA -122 3132 2909 350 302 108 22 chr12 100399860 100399999 -43386456 - L3 LINE CR1 -58 1519 1369 1161 175 4 57 chr12 100400008 100400043 -43386412 + AluJo SINE Alu 84 119 -193 2415 76 13 0 chr12 100400043 100400347 -43386108 + AluY SINE Alu 1 308 -3 1161 175 4 57 chr12 100400347 100400540 -43385915 + AluJo SINE Alu 119 300 -12 304 224 41 49 chr12 100400541 100400674 -43385781 + L1ME4a LINE L1 5734 5869 -252 3081 118 19 11 chr12 100400783 100401249 -43385206 - Tigger1 DNA MER2_type 0 2418 1949 1510 138 0 106 chr12 100401250 100401525 -43384930 + AluSx SINE Alu 1 246 -66 2456 86 7 0 chr12 100401525 100401828 -43384627 + AluSp SINE Alu 1 306 -7 269 194 0 48 chr12 100401828 100401890 -43384565 + AluSx SINE Alu 233 291 -10 * 325 169 15 0 chr12 100401884 100401949 -43384506 - Tigger1 DNA MER2_type -455 1963 1898 306 0 0 0 chr12 100402776 100402810 -43383645 + (CA)n Simple_repeat Simple_repeat 1 34 0 2067 113 0 3 chr12 100402955 100403238 -43383217 + AluSx SINE Alu 27 308 -4 540 125 11 0 chr12 100403252 100403340 -43383115 + L1MB4 LINE L1 6091 6179 -1 528 111 0 44 chr12 100403652 100403742 -43382713 - AluSp/q SINE Alu 0 313 228 593 152 0 120 chr12 100404586 100404672 -43381783 + AluJo/FLAM SINE Alu 2 70 -242 2162 111 3 3 chr12 100404672 100404969 -43381486 + AluSx SINE Alu 1 297 -15 593 152 0 120 chr12 100404969 100405007 -43381448 + AluJo/FLAM SINE Alu 70 111 -201 231 278 0 0 chr12 100405026 100405116 -43381339 - L1MC4 LINE L1 -1339 6703 6614 301 182 0 45 chr12 100405117 100405183 -43381272 + L1MCa LINE L1 2006 2068 -4358 351 192 0 0 chr12 100405185 100405258 -43381197 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 2310 106 0 3 chr12 100406020 100406322 -43380133 - AluSg SINE Alu -9 301 1 1570 194 17 0 chr12 100406539 100406833 -43379622 - AluJb SINE Alu -13 299 1 2641 215 95 31 chr12 100406927 100407000 -43379455 - L1MB7 LINE L1 0 6184 6117 1042 187 0 0 chr12 100407000 100407166 -43379289 + FRAM SINE Alu 1 166 0 2641 215 95 31 chr12 100407166 100408091 -43378364 - L1MB7 LINE L1 -67 6117 5114 1858 145 14 0 chr12 100408270 100408566 -43377889 - AluJo SINE Alu -11 301 2 1603 79 19 5 chr12 100408754 100408970 -43377485 + L1PB1 LINE L1 5931 6149 -2 2008 147 0 3 chr12 100409002 100409295 -43377160 + AluSx SINE Alu 1 292 -20 362 258 73 8 chr12 100409382 100409506 -43376949 - L1MEd LINE L1 -5983 136 5 1145 161 12 37 chr12 100409530 100409772 -43376683 - L1MB8 LINE L1 0 6178 5943 1531 166 60 4 chr12 100409781 100410046 -43376409 + Ricksha DNA DNA 10 289 -2957 * 6161 132 23 56 chr12 100410044 100410126 -43376329 + Ricksha DNA DNA 1821 1904 -1342 1845 164 20 3 chr12 100410126 100410430 -43376025 + AluJb SINE Alu 1 309 -3 6161 132 23 56 chr12 100410430 100411022 -43375433 + Ricksha DNA DNA 1904 2447 -799 2062 123 0 3 chr12 100411022 100411315 -43375140 - AluSx SINE Alu -20 292 1 6161 132 23 56 chr12 100411315 100411748 -43374707 + Ricksha DNA DNA 2447 2893 -353 3030 82 32 0 chr12 100411848 100412248 -43374207 + MER41A LTR ERV1 54 466 -88 6031 143 20 20 chr12 100412264 100413081 -43373374 - Tigger1 DNA MER2_type -1418 1000 181 1513 181 38 11 chr12 100413081 100413368 -43373087 + AluJo SINE Alu 1 295 -17 6031 143 20 20 chr12 100413368 100413547 -43372908 - Tigger1 DNA MER2_type -2236 182 4 2124 97 10 7 chr12 100413768 100414066 -43372389 + AluSx SINE Alu 1 299 -13 2376 92 0 0 chr12 100414317 100414611 -43371844 + AluSq SINE Alu 5 298 -15 763 180 33 0 chr12 100415053 100415175 -43371280 - FLAM_C SINE Alu -7 126 1 262 0 0 0 chr12 100415206 100415234 -43371221 + U6 snRNA snRNA 1 28 -79 1546 173 35 28 chr12 100415338 100415627 -43370828 + AluJo SINE Alu 1 291 -21 1452 149 0 14 chr12 100415949 100416170 -43370285 - AluSx SINE Alu -94 218 1 302 45 23 0 chr12 100417194 100417238 -43369217 + (TG)n Simple_repeat Simple_repeat 2 46 0 763 251 54 25 chr12 100417606 100417845 -43368610 + MIR SINE MIR 15 260 -2 212 277 0 15 chr12 100417929 100417994 -43368461 - MIR3 SINE MIR -5 203 140 888 191 47 91 chr12 100418009 100418074 -43368381 + L1ME2 LINE L1 5854 5920 -258 1987 103 26 4 chr12 100418074 100418345 -43368110 - AluSg SINE Alu -15 295 19 888 191 47 91 chr12 100418345 100418600 -43367855 + L1ME2 LINE L1 5920 6167 -11 422 248 103 8 chr12 100418600 100418717 -43367738 - MER5B DNA MER1_type -50 128 1 211 329 37 24 chr12 100418742 100418824 -43367631 - MIR SINE MIR -97 111 29 1754 145 8 0 chr12 100418979 100419234 -43367221 - AluJo SINE Alu -55 257 1 278 257 43 0 chr12 100419235 100419305 -43367150 + MLT1G1 LTR MaLR 235 307 -288 367 289 0 44 chr12 100419343 100419478 -43366977 + L2 LINE L2 3139 3267 -5 767 307 44 4 chr12 100419493 100419721 -43366734 - MIR SINE MIR -6 256 20 208 286 0 0 chr12 100419796 100419838 -43366617 + L2 LINE L2 3180 3221 -92 2842 10 0 0 chr12 100419907 100420216 -43366239 - AluYa5 SINE Alu -2 309 1 696 327 66 46 chr12 100420675 100420775 -43365680 + L2 LINE L2 1859 1956 -1358 1809 164 3 3 chr12 100420775 100421067 -43365388 - AluJb SINE Alu -20 292 1 696 327 66 46 chr12 100421067 100421483 -43364972 + L2 LINE L2 1956 2385 -929 801 267 106 19 chr12 100421484 100421848 -43364607 + MLT1G1 LTR MaLR 1 423 -172 239 0 32 0 chr12 100421917 100421948 -43364507 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 897 142 0 0 chr12 100421953 100422080 -43364375 - FLAM_C SINE Alu -16 127 1 286 345 149 21 chr12 100422123 100422451 -43364004 + L2 LINE L2 2380 2749 -565 2371 92 7 0 chr12 100422453 100422759 -43363696 + AluSx SINE Alu 2 309 -3 198 118 0 0 chr12 100423032 100423066 -43363389 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 338 321 45 0 chr12 100423067 100423179 -43363276 - L2 LINE L2 -14 3258 3142 1875 113 33 23 chr12 100423719 100424020 -43362435 + LTR49-int LTR ERV1 6028 6331 0 1624 109 16 24 chr12 100424020 100424268 -43362187 + LTR49 LTR ERV1 1 246 -349 227 306 99 54 chr12 100424299 100424409 -43362046 - L2 LINE L2 -509 2805 2701 2213 117 0 3 chr12 100424409 100424709 -43361746 + AluSg SINE Alu 1 299 -11 2547 56 10 3 chr12 100424709 100425014 -43361441 + AluY SINE Alu 1 307 -4 227 306 99 54 chr12 100425014 100425144 -43361311 - L2 LINE L2 -612 2702 2553 464 290 40 23 chr12 100425188 100425291 -43361164 + MER117 DNA MER1_type 17 126 -71 1843 128 26 54 chr12 100425291 100425604 -43360851 + AluSx SINE Alu 1 304 -8 464 290 40 23 chr12 100425604 100425676 -43360779 + MER117 DNA MER1_type 126 195 -2 888 238 30 48 chr12 100425720 100425989 -43360466 + L1ME3 LINE L1 5899 6162 0 382 237 53 18 chr12 100426621 100426735 -43359720 - MIR SINE MIR -100 162 45 206 294 48 95 chr12 100426847 100426896 -43359559 + MIR SINE MIR 31 81 -127 2000 117 27 13 chr12 100426896 100427194 -43359261 - AluSq SINE Alu -11 302 1 206 294 48 95 chr12 100427194 100427270 -43359185 + MIR SINE MIR 81 150 -58 788 174 23 15 chr12 100427449 100427581 -43358874 - AluJo SINE Alu -178 134 2 2155 96 20 13 chr12 100427632 100427934 -43358521 - AluSg SINE Alu -6 304 1 2105 101 0 4 chr12 100427934 100428212 -43358243 - AluSx SINE Alu -6 306 30 1456 225 41 25 chr12 100428242 100428606 -43357849 + MLT1A2 LTR MaLR 1 370 -4 1129 285 72 59 chr12 100429282 100429704 -43356751 - LTR67 LTR ERVL -10 547 115 2092 123 17 7 chr12 100429704 100430005 -43356450 + AluSx SINE Alu 1 304 -8 1129 285 72 59 chr12 100430005 100430122 -43356333 - LTR67 LTR ERVL -442 115 1 319 231 125 10 chr12 100430133 100430237 -43356218 - L1ME LINE L1 -394 5768 5653 838 258 91 48 chr12 100430295 100430469 -43355986 - L1ME LINE L1 -896 5250 5085 1991 93 41 24 chr12 100430469 100430759 -43355696 + AluSg SINE Alu 1 295 -15 838 258 91 48 chr12 100430759 100431103 -43355352 - L1ME LINE L1 -1061 5085 4710 198 103 0 0 chr12 100431182 100431211 -43355244 + (A)n Simple_repeat Simple_repeat 1 29 0 2033 128 3 0 chr12 100432326 100432608 -43353847 - AluSx SINE Alu -24 288 6 1704 142 10 64 chr12 100432631 100432927 -43353528 - AluSg SINE Alu -30 280 1 271 209 139 52 chr12 100433134 100433249 -43353206 - MLT1K LTR MaLR 0 588 464 320 265 52 100 chr12 100433309 100433629 -43352826 - MLT1L LTR MaLR -230 358 32 2017 162 0 0 chr12 100433690 100433987 -43352468 + AluJo SINE Alu 1 297 -15 415 287 28 7 chr12 100435077 100435220 -43351235 - MIR SINE MIR 0 262 117 603 110 24 47 chr12 100435469 100435596 -43350859 + MER4-int LTR ERV1 3924 4047 -2551 250 183 80 88 chr12 100435596 100435733 -43350722 - L2 LINE L2 -94 3219 3084 3090 171 27 54 chr12 100435759 100436034 -43350421 + L1MB7 LINE L1 5567 5848 -336 1758 143 11 4 chr12 100436034 100436307 -43350148 - AluJo SINE Alu -22 290 16 3090 171 27 54 chr12 100436307 100436656 -43349799 + L1MB7 LINE L1 5848 6174 -10 421 341 8 0 chr12 100436674 100436800 -43349655 - L2 LINE L2 -261 3052 2926 2073 148 3 0 chr12 100436811 100437122 -43349333 + AluSx SINE Alu 1 312 0 562 236 85 64 chr12 100437924 100438176 -43348279 + MLT1H LTR MaLR 3 298 -251 1383 167 63 67 chr12 100438253 100438553 -43347902 - AluJb SINE Alu -13 299 1 226 283 177 0 chr12 100438688 100438801 -43347654 + MIR SINE MIR 89 221 -41 786 130 0 24 chr12 100439956 100440079 -43346376 + FLAM_C SINE Alu 23 142 -1 1580 195 48 40 chr12 100440079 100440458 -43345997 + MLT1C LTR MaLR 86 467 0 1664 168 3 24 chr12 100440795 100441092 -43345363 - AluJb SINE Alu -14 298 8 429 162 0 15 chr12 100441183 100441251 -43345204 + MLT1D LTR MaLR 1 67 -438 1920 153 7 13 chr12 100441379 100441550 -43344905 - AluJb SINE Alu -7 305 135 2234 94 0 49 chr12 100441550 100441878 -43344577 - AluSx SINE Alu 0 312 1 1920 153 7 13 chr12 100441878 100442013 -43344442 - AluJb SINE Alu -177 135 1 220 250 0 0 chr12 100443463 100443507 -43342948 + polypyrimidine Low_complexity Low_complexity 3 46 0 2073 51 120 11 chr12 100443507 100443781 -43342674 - AluY SINE Alu -7 304 1 1802 166 21 7 chr12 100443782 100444072 -43342383 - AluJo SINE Alu -18 294 1 983 171 163 0 chr12 100444072 100444317 -43342138 - MER33 DNA MER1_type -39 285 1 4100 116 42 124 chr12 100444502 100446022 -43340433 + pTR5 LTR ERV1 742 2606 0 764 258 62 5 chr12 100446068 100446277 -43340178 + MER102b DNA MER1_type 84 304 -37 1312 144 46 19 chr12 100446557 100446820 -43339635 + L1MA4A LINE L1 5853 6122 -181 829 191 0 0 chr12 100446824 100446965 -43339490 + FLAM_C SINE Alu 1 141 -2 469 165 52 26 chr12 100446981 100447096 -43339359 + L1MA4A LINE L1 6182 6299 -4 2255 132 3 0 chr12 100447155 100447466 -43338989 - AluSx SINE Alu 0 312 1 216 342 40 0 chr12 100447778 100447854 -43338601 - L3 LINE CR1 -71 1506 1428 731 173 0 53 chr12 100448221 100448371 -43338084 + FLAM_C SINE Alu 2 143 0 188 266 158 38 chr12 100448426 100448610 -43337845 - L2 LINE L2 -642 2672 2467 3989 64 10 8 chr12 100449186 100449685 -43336770 + LTR3b LTR ERVK 1 500 0 1396 158 158 4 chr12 100449731 100450144 -43336311 - AluJo SINE Alu 0 453 1 758 214 24 0 chr12 100450147 100450315 -43336140 + MIR SINE MIR 90 261 -1 306 224 64 40 chr12 100450274 100450399 -43336056 - MIR SINE MIR -35 227 100 * 2002 124 4 0 chr12 100451708 100452012 -43334443 - AluSq SINE Alu 0 316 12 2077 182 9 23 chr12 100452036 100452469 -43333986 - L1MB8 LINE L1 0 6178 5752 2314 105 0 0 chr12 100452681 100452976 -43333479 - AluSx SINE Alu -17 295 1 1930 181 91 25 chr12 100453486 100453917 -43332538 + LTR2B LTR ERV1 32 490 0 489 126 53 32 chr12 100454099 100454194 -43332261 + MER4A LTR ERV1 1 97 -567 2024 105 3 27 chr12 100454194 100454547 -43331908 + MER4A LTR ERV1 262 664 0 3033 100 96 60 chr12 100454550 100455208 -43331247 + MER4A-int LTR ERV1 1 834 -5764 279 0 0 0 chr12 100455241 100455272 -43331183 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1266 226 38 41 chr12 100455281 100455595 -43330860 + MER4A-int LTR ERV1 1855 2167 -4164 4345 115 23 23 chr12 100455652 100455804 -43330651 + MER4B-int LTR ERV1 198 349 -6409 1784 64 18 0 chr12 100455804 100456024 -43330431 - AluSc SINE Alu -2 307 84 4345 115 23 23 chr12 100456024 100456768 -43329687 + MER4B-int LTR ERV1 349 1149 -5609 207 100 0 0 chr12 100456768 100456798 -43329657 + (TG)n Simple_repeat Simple_repeat 1 30 0 4002 106 72 12 chr12 100456823 100457513 -43328942 + MER4B-int LTR ERV1 1764 2495 -4103 1187 167 132 0 chr12 100457513 100457740 -43328715 - LTR8 LTR ERV1 -434 257 1 1868 80 34 22 chr12 100457740 100458064 -43328391 + MER4-int LTR ERV1 2737 3064 -3534 288 0 0 0 chr12 100458064 100458096 -43328359 + (T)n Simple_repeat Simple_repeat 1 32 0 38 22 0 0 chr12 100458096 100458141 -43328314 + GC_rich Low_complexity Low_complexity 1 45 0 1425 129 5 0 chr12 100458531 100458732 -43327723 + AluSg/x SINE Alu 96 297 -13 2218 108 0 0 chr12 100458742 100459030 -43327425 + AluSg SINE Alu 8 295 -15 196 313 46 53 chr12 100459033 100459164 -43327291 - MIR3 SINE MIR -65 143 14 750 178 0 0 chr12 100459645 100459763 -43326692 + FLAM_C SINE Alu 1 118 -15 214 295 16 0 chr12 100460425 100460486 -43325969 - L2 LINE L2 -247 3066 3005 2287 91 31 0 chr12 100460525 100460811 -43325644 - AluSx SINE Alu -16 296 2 261 324 27 45 chr12 100460862 100460973 -43325482 + MIR SINE MIR 42 150 -58 1763 152 0 4 chr12 100461170 100461433 -43325022 - AluSx SINE Alu -2 310 49 2415 104 0 0 chr12 100461442 100461751 -43324704 - AluSx SINE Alu -3 309 1 988 320 55 16 chr12 100461803 100462349 -43324106 - L2 LINE L2 -590 2724 2158 256 273 30 0 chr12 100462352 100462418 -43324037 + MER3 DNA MER1_type 45 112 -97 1299 35 0 0 chr12 100462421 100462564 -43323891 + AluYb8 SINE Alu 1 143 -175 608 228 7 0 chr12 100462672 100462821 -43323634 - L1MA10 LINE L1 -1 6333 6184 255 170 0 0 chr12 100462908 100462955 -43323500 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr12 100463085 100463111 -43323344 + AT_rich Low_complexity Low_complexity 1 26 0 305 133 33 47 chr12 100463963 100464174 -43322281 + AluJb SINE Alu 1 300 -2 309 223 18 69 chr12 100464276 100464413 -43322042 + MER110 LTR ERV1 375 484 0 980 281 83 10 chr12 100464430 100464814 -43321641 + L2 LINE L2 2898 3309 -4 2240 119 7 0 chr12 100464862 100465172 -43321283 - AluSx SINE Alu 0 312 1 199 261 0 0 chr12 100465260 100465306 -43321149 + L2 LINE L2 3263 3308 -5 396 82 0 0 chr12 100465936 100465997 -43320458 + (TATG)n Simple_repeat Simple_repeat 2 62 0 222 42 62 21 chr12 100465997 100466045 -43320410 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1611 185 3 14 chr12 100466045 100466337 -43320118 - AluJo SINE Alu -21 291 3 361 106 0 0 chr12 100467040 100467113 -43319342 - Alu SINE Alu 0 310 238 230 298 53 21 chr12 100467870 100467964 -43318491 - L2 LINE L2 -15 3257 3161 449 333 51 30 chr12 100467974 100468005 -43318450 + MIR SINE MIR 23 52 -210 1981 129 3 44 chr12 100468005 100468322 -43318133 + AluSx SINE Alu 1 304 -8 449 333 51 30 chr12 100468322 100468524 -43317931 + MIR SINE MIR 52 261 -1 747 183 0 42 chr12 100468989 100469131 -43317324 + AluJo SINE Alu 1 136 -176 2119 117 0 0 chr12 100469319 100469627 -43316828 + AluSx SINE Alu 1 308 0 2907 13 0 0 chr12 100470088 100470400 -43316055 + AluYb8 SINE Alu 1 312 -6 31103 101 9 10 chr12 100471706 100476027 -43310428 + HERV9 LTR ERV1 4078 8395 -4 247 163 0 0 chr12 100476031 100476074 -43310381 + LTR30 LTR ERV1 1 43 -679 2378 82 7 3 chr12 100476092 100476395 -43310060 - AluSx SINE Alu -8 304 1 729 147 76 119 chr12 100476397 100476653 -43309802 + LTR12 LTR ERV1 48 285 -429 310 221 0 0 chr12 100476654 100476722 -43309733 + LTR30 LTR ERV1 553 620 -102 722 174 22 12 chr12 100476728 100476864 -43309591 + LTR12 LTR ERV1 296 480 -234 820 144 0 8 chr12 100476894 100477019 -43309436 - FLAM_C SINE Alu -19 124 1 2184 167 68 25 chr12 100477053 100477525 -43308930 + LTR22B LTR ERVK 1 492 0 3904 143 38 52 chr12 100477612 100478375 -43308080 + HERVK22 LTR ERVK 3 754 -6083 787 200 21 7 chr12 100478768 100478913 -43307542 + HERVK22 LTR ERVK 2327 2473 -4364 477 155 0 12 chr12 100478908 100478992 -43307463 + HERVK22 LTR ERVK 2825 2907 -3930 * 388 98 0 0 chr12 100478986 100479037 -43307418 + HERVK22 LTR ERVK 2495 2545 -4292 * 4755 118 3 4 chr12 100479036 100479717 -43306738 + HERVK22 LTR ERVK 3655 4334 -2503 301 192 0 0 chr12 100479717 100479769 -43306686 + LTR30 LTR ERV1 1 52 -670 1102 113 5 67 chr12 100479769 100479963 -43306492 + LTR12 LTR ERV1 53 234 -480 253 179 90 0 chr12 100480002 100480069 -43306386 + LTR12 LTR ERV1 205 277 -437 293 303 10 0 chr12 100480069 100480168 -43306287 + LTR30 LTR ERV1 544 643 -79 679 139 0 0 chr12 100480169 100480270 -43306185 + LTR12 LTR ERV1 481 581 -133 3488 119 0 4 chr12 100480270 100480764 -43305691 + HERVKC4 LTR ERVK 4331 4822 -2015 4913 153 16 20 chr12 100480836 100481803 -43304652 + HERVKC4 LTR ERVK 2623 6837 0 2046 175 72 36 chr12 100481803 100482278 -43304177 + LTR22B LTR ERVK 1 492 0 2024 121 4 0 chr12 100482308 100482581 -43303874 - AluSx SINE Alu -34 278 5 3159 162 49 30 chr12 100482905 100483262 -43303193 - L1MB7 LINE L1 -27 6157 5808 1805 171 0 10 chr12 100483262 100483560 -43302895 + AluJb SINE Alu 1 295 -17 3159 162 49 30 chr12 100483560 100483745 -43302710 - L1MB7 LINE L1 -376 5808 5599 1726 182 33 36 chr12 100483745 100483883 -43302572 - MLT1A1 LTR MaLR 0 365 228 2074 105 61 0 chr12 100483883 100484160 -43302295 + AluSg SINE Alu 1 294 -16 1726 182 33 36 chr12 100484160 100484384 -43302071 - MLT1A1 LTR MaLR -137 228 4 3159 162 49 30 chr12 100484384 100484475 -43301980 - L1MB7 LINE L1 -585 5599 5511 2417 98 0 0 chr12 100485351 100485657 -43300798 + AluSx SINE Alu 1 306 -6 226 286 43 0 chr12 100485788 100485858 -43300597 - MIR SINE MIR -108 154 82 366 213 0 75 chr12 100485910 100486004 -43300451 - L1MC1 LINE L1 -1 6332 6246 312 156 0 0 chr12 100486040 100486085 -43300370 - Alu SINE Alu -254 45 1 799 174 0 0 chr12 100486234 100486366 -43300089 + FLAM_C SINE Alu 2 133 0 385 288 50 7 chr12 100486381 100486520 -43299935 + L1ME4a LINE L1 5514 5658 -463 507 237 79 5 chr12 100486559 100486774 -43299681 + L1ME4a LINE L1 5738 5968 -153 249 241 69 35 chr12 100486740 100486827 -43299628 - L1MC4 LINE L1 -1340 6702 6613 * 298 245 39 10 chr12 100486809 100486911 -43299544 + L1ME4a LINE L1 5947 6051 -70 1886 177 3 0 chr12 100487051 100487362 -43299093 + AluJo SINE Alu 1 312 0 410 326 56 10 chr12 100487370 100487566 -43298889 + MIR SINE MIR 26 230 -32 931 114 8 0 chr12 100488464 100488595 -43297860 + FLAM_C SINE Alu 1 132 -1 1994 128 21 0 chr12 100488794 100489082 -43297373 + AluSx SINE Alu 1 294 -18 299 240 128 67 chr12 100489581 100489760 -43296695 - MIR SINE MIR -71 191 2 2090 120 13 0 chr12 100489869 100490168 -43296287 + AluSx SINE Alu 1 303 -9 1754 38 5 14 chr12 100490685 100490898 -43295557 - AluSp SINE Alu -18 295 85 1826 71 4 0 chr12 100490993 100491219 -43295236 - AluY SINE Alu -2 309 83 207 0 0 0 chr12 100491358 100491381 -43295074 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1218 167 108 66 chr12 100491404 100491692 -43294763 - AluJo SINE Alu -9 303 4 2192 141 11 76 chr12 100491700 100491925 -43294530 - L1MB7 LINE L1 -48 6136 5898 2446 93 3 0 chr12 100491925 100492235 -43294220 + AluSx SINE Alu 2 312 0 2192 141 11 76 chr12 100492235 100492748 -43293707 - L1MB7 LINE L1 -286 5898 5720 1712 187 3 3 chr12 100492344 100492638 -43293817 - AluJo SINE Alu -18 294 1 822 292 41 65 chr12 100492638 100492793 -43293662 - L1PB2 LINE L1 -338 5813 5656 2251 103 3 3 chr12 100492793 100493093 -43293362 + AluSp SINE Alu 1 300 -13 822 292 41 65 chr12 100493093 100493386 -43293069 - L1PB2 LINE L1 -495 5656 5378 2085 156 0 0 chr12 100493418 100493726 -43292729 - AluJo SINE Alu -4 308 1 646 292 62 0 chr12 100493897 100494106 -43292349 - MIR SINE MIR -28 234 13 341 318 36 9 chr12 100494224 100494334 -43292121 + MIR SINE MIR 18 130 -78 323 151 0 25 chr12 100494337 100494405 -43292050 + AluJo SINE Alu 85 135 -167 1487 181 23 29 chr12 100494405 100494714 -43291741 + AluSx SINE Alu 1 307 -5 2090 110 3 13 chr12 100495157 100495458 -43290997 + AluSx SINE Alu 1 298 -14 1998 131 10 28 chr12 100495536 100495827 -43290628 + AluJo SINE Alu 3 288 -24 2148 96 0 7 chr12 100495865 100496147 -43290308 + AluSc SINE Alu 20 299 -10 1642 108 0 0 chr12 100496808 100497021 -43289434 - AluSq SINE Alu -15 298 86 4064 159 7 24 chr12 100497060 100497637 -43288818 - L1MB3 LINE L1 -7 6176 5613 2218 102 7 23 chr12 100497637 100497941 -43288514 - AluSx SINE Alu -13 299 1 4064 159 7 24 chr12 100497941 100498111 -43288344 - L1MB3 LINE L1 -570 5613 5442 1897 251 164 44 chr12 100498138 100498461 -43287994 + L2 LINE L2 1826 2109 -1204 2210 126 0 3 chr12 100498461 100498763 -43287692 - AluSx SINE Alu -11 301 1 1897 251 164 44 chr12 100498763 100499291 -43287164 + L2 LINE L2 2109 2572 -741 2188 112 0 14 chr12 100499291 100499587 -43286868 + AluSx SINE Alu 21 312 0 1897 251 164 44 chr12 100499587 100499983 -43286472 + L2 LINE L2 2572 3258 -55 2149 126 7 0 chr12 100500239 100500541 -43285914 + AluSx SINE Alu 2 305 -7 2602 133 38 17 chr12 100500557 100500977 -43285478 - MSTB1 LTR MaLR -2 430 2 2196 113 0 0 chr12 100501051 100501362 -43285093 - AluSx SINE Alu 0 311 1 782 197 0 0 chr12 100501826 100501958 -43284497 + FLAM_A SINE Alu 1 132 -1 1137 160 6 6 chr12 100502077 100502258 -43284197 - AluJo SINE Alu -21 291 111 1794 115 66 28 chr12 100502306 100502594 -43283861 - AluSx SINE Alu -13 299 1 1724 144 49 46 chr12 100502823 100503128 -43283327 - AluJo SINE Alu -6 306 1 221 282 51 0 chr12 100503131 100503209 -43283246 + MIR SINE MIR 116 197 -65 21 0 0 0 chr12 100503215 100503236 -43283219 + AT_rich Low_complexity Low_complexity 1 21 0 441 253 102 110 chr12 100503405 100503787 -43282668 - L2 LINE L2 0 3313 2929 966 96 0 30 chr12 100503787 100503922 -43282533 + FLAM_C SINE Alu 3 133 0 1136 97 11 0 chr12 100503924 100504100 -43282355 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 441 253 102 110 chr12 100504100 100504136 -43282319 - L2 LINE L2 -385 2928 2893 185 0 40 0 chr12 100504136 100504161 -43282294 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 441 253 102 110 chr12 100504161 100504237 -43282218 - L2 LINE L2 -420 2893 2819 2561 62 0 0 chr12 100504284 100504593 -43281862 + AluY SINE Alu 1 309 -2 2087 136 0 10 chr12 100504872 100505194 -43281261 + AluSx SINE Alu 1 312 0 2067 141 0 0 chr12 100505231 100505536 -43280919 + AluSx SINE Alu 1 305 -7 611 162 120 17 chr12 100505556 100505673 -43280782 - FLAM_C SINE Alu 0 133 5 1131 156 73 5 chr12 100505741 100505946 -43280509 - MER20 DNA MER1_type 0 219 1 2459 64 3 6 chr12 100506050 100506361 -43280094 + AluY SINE Alu 1 310 -1 8998 111 22 5 chr12 100506391 100507648 -43278807 + HSMAR1 DNA Mariner 9 1287 0 644 303 70 41 chr12 100507737 100507988 -43278467 - L2 LINE L2 -16 3297 3028 2299 105 0 3 chr12 100507988 100508283 -43278172 + AluSx SINE Alu 1 294 -18 644 303 70 41 chr12 100508283 100508443 -43278012 - L2 LINE L2 -285 3028 2874 1946 129 4 11 chr12 100509052 100509331 -43277124 + AluJb SINE Alu 14 290 -22 684 176 9 0 chr12 100509332 100509440 -43277015 - AluJo/FLAM SINE Alu -201 111 3 1099 188 19 14 chr12 100509602 100509815 -43276640 - MER20 DNA MER1_type -5 214 1 871 191 28 0 chr12 100509910 100510088 -43276367 + MER5A DNA MER1_type 1 183 -6 2089 135 16 3 chr12 100510355 100510658 -43275797 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr12 100510676 100510706 -43275749 + AT_rich Low_complexity Low_complexity 1 30 0 710 58 0 0 chr12 100510836 100510923 -43275532 - U6 snRNA snRNA -6 101 15 667 192 0 0 chr12 100510925 100511045 -43275410 - FLAM_C SINE Alu -22 121 2 1761 167 7 10 chr12 100511136 100511430 -43275025 + AluJb SINE Alu 1 293 -19 1756 122 10 68 chr12 100511990 100512301 -43274154 + AluJb SINE Alu 13 305 -7 1441 154 18 46 chr12 100512322 100512375 -43274080 + L1M4 LINE L1 5318 5371 -807 2141 124 3 16 chr12 100512375 100512682 -43273773 + AluSq SINE Alu 1 303 -10 1441 154 18 46 chr12 100512682 100512913 -43273542 + L1M4 LINE L1 5371 5594 -584 855 230 53 5 chr12 100512916 100513125 -43273330 + MLT1A1 LTR MaLR 1 219 -146 423 0 0 0 chr12 100513322 100513369 -43273086 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 21 57 0 0 chr12 100513410 100513445 -43273010 + AT_rich Low_complexity Low_complexity 1 35 0 968 145 0 0 chr12 100513537 100513675 -43272780 - FLAM_C SINE Alu -3 140 3 204 40 0 0 chr12 100513694 100513719 -43272736 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2054 119 13 3 chr12 100514295 100514597 -43271858 + AluSx SINE Alu 1 305 -7 300 158 0 0 chr12 100514660 100514717 -43271738 + (TA)n Simple_repeat Simple_repeat 2 58 0 2364 99 7 0 chr12 100515877 100516179 -43270276 + AluSx SINE Alu 1 304 -8 2266 117 0 0 chr12 100516231 100516530 -43269925 + AluSx SINE Alu 1 299 -13 323 48 0 0 chr12 100516571 100516613 -43269842 + L1PB1 LINE L1 5926 5967 -184 2466 85 0 3 chr12 100516621 100516927 -43269528 + AluSx SINE Alu 1 305 -7 304 121 17 17 chr12 100516930 100516988 -43269467 - LTR12 LTR ERV1 -656 58 1 50724 98 8 8 chr12 100516991 100523923 -43262532 - HERV9 LTR ERV1 -2 8397 1462 2408 135 0 0 chr12 100523914 100524261 -43262194 - HERV9 LTR ERV1 -5217 3040 2694 * 7450 127 11 34 chr12 100524258 100525621 -43260834 - HERV9 LTR ERV1 -6935 1464 54 739 165 25 0 chr12 100525643 100525764 -43260691 - LTR12 LTR ERV1 -236 478 355 313 221 0 0 chr12 100525764 100525832 -43260623 - LTR30 LTR ERV1 -102 620 553 773 129 82 169 chr12 100525833 100526088 -43260367 - LTR12 LTR ERV1 -429 285 53 244 231 0 0 chr12 100526088 100526140 -43260315 - LTR30 LTR ERV1 -670 52 1 250 338 56 46 chr12 100526145 100526450 -43260005 + HAL1 LINE L1 59 366 -2141 358 316 132 17 chr12 100526654 100526828 -43259627 - MLT1L LTR MaLR 0 615 422 879 223 87 59 chr12 100526857 100526948 -43259507 - MLT1L LTR MaLR -278 337 250 1888 152 7 16 chr12 100526948 100527257 -43259198 - AluJo SINE Alu -6 306 1 879 223 87 59 chr12 100527257 100527488 -43258967 - MLT1L LTR MaLR -365 250 6 1999 133 0 7 chr12 100527618 100527934 -43258521 + AluSx SINE Alu 1 314 0 2137 140 3 0 chr12 100528255 100528555 -43257900 + AluSx SINE Alu 1 301 -11 1045 165 0 34 chr12 100528556 100528732 -43257723 + AluJb SINE Alu 135 304 -8 1973 164 3 0 chr12 100528881 100529192 -43257263 + AluSx SINE Alu 1 312 0 1084 83 0 0 chr12 100529251 100529384 -43257071 + AluSq/x SINE Alu 1 133 -180 1527 120 74 128 chr12 100529621 100529654 -43256801 - MER65A LTR ERV1 -98 347 314 1995 101 44 10 chr12 100529654 100529952 -43256503 - AluSx SINE Alu -4 308 1 1527 120 74 128 chr12 100529952 100530231 -43256224 - MER65A LTR ERV1 -131 314 55 1780 176 17 0 chr12 100530231 100530521 -43255934 - AluJb SINE Alu -17 295 1 1527 120 74 128 chr12 100530521 100530574 -43255881 - MER65A LTR ERV1 -390 55 1 425 353 113 29 chr12 100530662 100531184 -43255271 + L2 LINE L2 1915 2480 -834 2190 87 35 3 chr12 100531239 100531479 -43254976 + AluSx SINE Alu 1 253 -59 180 0 0 0 chr12 100531479 100531499 -43254956 + (CACTG)n Simple_repeat Simple_repeat 5 24 0 2190 87 35 3 chr12 100531499 100531545 -43254910 + AluSx SINE Alu 253 296 -16 1206 56 14 0 chr12 100531552 100531695 -43254760 + AluSg/x SINE Alu 153 297 -13 2334 96 0 0 chr12 100531953 100532246 -43254209 + AluSx SINE Alu 1 293 -19 552 283 72 39 chr12 100532269 100532529 -43253926 - HsTC2 DNA Tc2 -1178 720 405 2173 132 15 26 chr12 100532529 100532870 -43253585 + MER1B DNA MER1_type 1 337 0 552 283 72 39 chr12 100532870 100533036 -43253419 - HsTC2 DNA Tc2 -1493 405 246 812 164 0 0 chr12 100533077 100533193 -43253262 - FLAM_C SINE Alu -27 116 1 2180 117 0 17 chr12 100533216 100533516 -43252939 + AluSx SINE Alu 1 295 -17 216 335 166 35 chr12 100533518 100533802 -43252653 + L2 LINE L2 2952 3272 0 2349 74 10 13 chr12 100534028 100534338 -43252117 - AluSg SINE Alu -1 309 1 1972 126 7 18 chr12 100537608 100537925 -43248530 + AluSx SINE Alu 1 314 0 208 278 0 0 chr12 100538159 100538213 -43248242 - L2 LINE L2 -5 3308 3255 290 254 114 46 chr12 100538354 100538484 -43247971 - MIR SINE MIR -55 153 15 2003 112 52 7 chr12 100538488 100538774 -43247681 - AluSx SINE Alu -13 299 1 237 158 0 0 chr12 100539412 100539450 -43247005 + Alu SINE Alu 129 166 -137 * 267 167 0 0 chr12 100539447 100539489 -43246966 + FLAM SINE Alu 79 120 -13 2231 129 0 3 chr12 100539732 100540041 -43246414 + AluSq SINE Alu 1 308 -5 885 200 42 0 chr12 100540310 100540475 -43245980 + FAM SINE Alu 1 172 -3 2420 75 10 0 chr12 100541158 100541453 -43245002 - AluSq SINE Alu -15 298 1 3207 208 63 28 chr12 100541460 100542639 -43243816 - L1ME1 LINE L1 -37 6129 4915 1577 170 87 7 chr12 100542695 100542971 -43243484 + AluJb SINE Alu 1 298 -14 371 197 0 0 chr12 100543226 100543297 -43243158 - MIR SINE MIR -119 143 73 1650 178 0 14 chr12 100543671 100543957 -43242498 - AluJb SINE Alu -30 282 1 266 143 12 119 chr12 100544013 100544042 -43242413 - MER116 DNA Mariner -2 78 48 1941 137 3 42 chr12 100544042 100544355 -43242100 + AluSx SINE Alu 1 301 -11 266 143 12 119 chr12 100544355 100544409 -43242046 - MER116 DNA Mariner -32 48 4 763 174 0 0 chr12 100544470 100544591 -43241864 - FLAM_A SINE Alu -11 122 2 231 36 0 0 chr12 100544791 100544819 -43241636 + (GAA)n Simple_repeat Simple_repeat 2 29 0 1246 128 0 0 chr12 100544874 100545046 -43241409 + AluSg/x SINE Alu 135 306 -4 21 0 0 0 chr12 100545955 100545976 -43240479 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 100546030 100546051 -43240404 + AT_rich Low_complexity Low_complexity 1 21 0 324 367 25 0 chr12 100546712 100546832 -43239623 - MIR SINE MIR -120 142 20 261 195 98 24 chr12 100546877 100546959 -43239496 + L3 LINE CR1 670 757 -820 29 70 0 0 chr12 100547010 100547067 -43239388 + AT_rich Low_complexity Low_complexity 1 57 0 2307 98 3 0 chr12 100548046 100548341 -43238114 - AluSp SINE Alu -17 296 1 730 245 151 0 chr12 100548484 100548676 -43237779 + MIR SINE MIR 18 238 -24 27 49 0 0 chr12 100549110 100549151 -43237304 + AT_rich Low_complexity Low_complexity 1 41 0 400 272 46 51 chr12 100549283 100549552 -43236903 - L1MC4a LINE L1 -254 5930 5653 2314 102 0 37 chr12 100549762 100550084 -43236371 + AluSx SINE Alu 1 310 -2 226 313 31 16 chr12 100550243 100550371 -43236084 - L1MC4a LINE L1 -1258 4888 4759 1323 87 0 17 chr12 100551229 100551401 -43235054 + AluSp SINE Alu 130 298 -15 531 169 93 0 chr12 100551402 100551520 -43234935 - L1MC4 LINE L1 0 8042 7914 1126 167 0 21 chr12 100551639 100551831 -43234624 - AluJo SINE Alu -5 307 120 517 243 45 25 chr12 100551855 100552057 -43234398 - L1MC4 LINE L1 -564 7478 7273 566 193 0 18 chr12 100552111 100552225 -43234230 - FLAM_A SINE Alu -6 136 25 251 289 41 77 chr12 100552472 100552718 -43233737 - L1MC4 LINE L1 -548 7494 7258 477 238 49 40 chr12 100552769 100553017 -43233438 - L1MC4a LINE L1 -624 7228 7015 1746 177 0 3 chr12 100553068 100553356 -43233099 - AluSx SINE Alu -25 287 1 1688 176 7 10 chr12 100553363 100553652 -43232803 - AluJo SINE Alu -24 288 1 381 117 0 0 chr12 100553656 100553716 -43232739 + (TG)n Simple_repeat Simple_repeat 2 61 0 602 242 0 0 chr12 100553721 100553845 -43232610 - FLAM_C SINE Alu -19 124 1 1346 183 30 11 chr12 100554095 100554358 -43232097 - AluJo SINE Alu 0 312 45 567 203 170 0 chr12 100554376 100554529 -43231926 - MER58A DNA MER1_type 0 224 46 1425 184 35 35 chr12 100554748 100555030 -43231425 + AluJo SINE Alu 11 292 -20 239 315 99 0 chr12 100557055 100557166 -43229289 - MIR SINE MIR -58 204 83 201 39 0 0 chr12 100557826 100557852 -43228603 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1517 200 39 6 chr12 100557934 100558264 -43228191 - L1MC1 LINE L1 -17 6316 5976 3152 156 59 20 chr12 100558321 100558357 -43228098 - L1MB3 LINE L1 -15 6168 6135 2303 112 0 0 chr12 100558357 100558669 -43227786 - AluSx SINE Alu 0 312 1 3152 156 59 20 chr12 100558669 100559292 -43227163 - L1MB3 LINE L1 -48 6135 5483 280 84 80 0 chr12 100559301 100559376 -43227079 - L1MB3 LINE L1 -823 5357 5297 2415 68 0 40 chr12 100559390 100559713 -43226742 + AluY SINE Alu 1 310 -1 1970 127 0 72 chr12 100559836 100560167 -43226288 + AluSx SINE Alu 1 307 -5 5901 202 61 29 chr12 100560317 100560776 -43225679 - L1 LINE L1 -817 5329 4886 1622 199 0 7 chr12 100560776 100561077 -43225378 + AluJo SINE Alu 1 299 -13 5901 202 61 29 chr12 100561077 100561169 -43225286 - L1 LINE L1 -1260 4886 4798 1519 204 6 22 chr12 100561169 100561482 -43224973 - AluJo SINE Alu -1 311 4 5901 202 61 29 chr12 100561482 100561739 -43224716 - L1 LINE L1 -1348 4798 4551 1654 138 93 34 chr12 100561739 100562093 -43224362 - THE1C LTR MaLR 0 375 1 5901 202 61 29 chr12 100562093 100563052 -43223403 - L1 LINE L1 -1595 4551 3503 1785 134 16 59 chr12 100563052 100563372 -43223083 - AluJo SINE Alu -6 306 1 7816 165 61 53 chr12 100563372 100563480 -43222975 - L1M4c LINE L1 -4371 2013 1907 2313 94 3 0 chr12 100563480 100563777 -43222678 + AluSc SINE Alu 1 298 -11 7816 165 61 53 chr12 100563777 100564024 -43222431 - L1M4c LINE L1 -4477 1907 1663 1887 153 0 46 chr12 100564024 100564350 -43222105 - AluJb SINE Alu -1 311 1 7816 165 61 53 chr12 100564350 100565972 -43220483 - L1M4c LINE L1 -4721 1663 19 1816 173 0 22 chr12 100566536 100566848 -43219607 - AluJo SINE Alu -7 305 1 1031 136 19 0 chr12 100567382 100567536 -43218919 - AluSg/x SINE Alu -22 290 134 1937 115 0 32 chr12 100567537 100567815 -43218640 - AluSx SINE Alu -19 293 25 1875 111 0 4 chr12 100567952 100568204 -43218251 - AluSq SINE Alu -62 251 1 276 253 13 25 chr12 100568728 100568807 -43217648 - L2 LINE L2 -7 3306 3229 2030 128 3 16 chr12 100568937 100569242 -43217213 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr12 100569603 100569646 -43216809 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 273 0 0 chr12 100569907 100569951 -43216504 + (CACG)n Simple_repeat Simple_repeat 1 44 0 2184 84 36 26 chr12 100572621 100572929 -43213526 - AluY SINE Alu 0 311 1 244 169 225 0 chr12 100575142 100575171 -43211284 + Tigger4(Zombi) DNA MER2_type 1 22 -2709 1928 128 17 3 chr12 100575171 100575460 -43210995 + AluSx SINE Alu 1 293 -19 244 169 225 0 chr12 100575460 100575501 -43210954 + Tigger4(Zombi) DNA MER2_type 22 87 -2644 * 1616 112 92 112 chr12 100575498 100575944 -43210511 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 2101 100 17 13 chr12 100576241 100576541 -43209914 + AluSq SINE Alu 1 301 -12 2516 66 0 3 chr12 100577358 100577662 -43208793 + AluY SINE Alu 1 303 -8 32 0 0 0 chr12 100578490 100578522 -43207933 + AT_rich Low_complexity Low_complexity 1 32 0 394 302 196 29 chr12 100578530 100578760 -43207695 - MIR SINE MIR -6 256 5 2161 107 0 0 chr12 100579267 100579548 -43206907 + AluSg SINE Alu 1 281 -29 371 217 7 94 chr12 100580164 100580302 -43206153 - MER115 DNA AcHobo -459 234 109 982 229 70 12 chr12 100580365 100580623 -43205832 - L2 LINE L2 -618 2696 2424 2069 160 0 0 chr12 100580793 100581105 -43205350 + AluSx SINE Alu 1 312 0 347 273 124 30 chr12 100581888 100582038 -43204417 - MIR SINE MIR -61 147 38 2006 139 0 16 chr12 100582155 100582458 -43203997 + AluSx SINE Alu 1 298 -14 2317 112 0 10 chr12 100584668 100584982 -43201473 + AluSx SINE Alu 1 311 -1 247 208 64 88 chr12 100585631 100585756 -43200699 - L1ME4a LINE L1 -34 6087 5966 2596 58 0 3 chr12 100585943 100586254 -43200201 - AluY SINE Alu -1 310 1 216 242 81 16 chr12 100587567 100587629 -43198826 + L2 LINE L2 3207 3272 0 329 309 75 99 chr12 100590183 100591022 -43195433 + L1M2 LINE L1 336 1154 -5695 2398 71 3 10 chr12 100591796 100592105 -43194350 + AluSq SINE Alu 1 307 -6 206 324 67 79 chr12 100593337 100593590 -43192865 + L2 LINE L2 3004 3253 -19 2477 84 0 0 chr12 100594671 100594981 -43191474 - AluSg SINE Alu 0 310 1 1512 163 35 58 chr12 100595106 100595419 -43191036 - AluJb SINE Alu -6 306 1 245 75 25 0 chr12 100595660 100595700 -43190755 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr12 100596377 100596399 -43190056 + AT_rich Low_complexity Low_complexity 1 22 0 1816 145 15 0 chr12 100596802 100597064 -43189391 - AluJb SINE Alu -46 266 1 2268 114 0 0 chr12 100597215 100597504 -43188951 - AluSq SINE Alu -24 289 1 2369 98 0 0 chr12 100597829 100598126 -43188329 + AluSq SINE Alu 1 297 -16 1826 112 8 15 chr12 100598701 100598870 -43187585 - AluSx SINE Alu -8 304 136 2174 108 0 0 chr12 100598870 100599158 -43187297 - AluSx SINE Alu -2 310 23 1826 112 8 15 chr12 100599158 100599247 -43187208 - AluSx SINE Alu -176 136 48 1081 155 0 0 chr12 100599546 100599701 -43186754 - FRAM SINE Alu -23 153 1 251 179 0 0 chr12 100599850 100599889 -43186566 - Charlie8 DNA MER1_type -2346 71 33 988 272 153 7 chr12 100600021 100600451 -43186004 + L2 LINE L2 1018 1510 -1804 2298 90 0 3 chr12 100600619 100600931 -43185524 - AluY SINE Alu 0 311 1 327 250 23 34 chr12 100600997 100601085 -43185370 - AluJo SINE Alu -122 180 94 305 140 0 0 chr12 100601111 100601161 -43185294 - FLAM_A SINE Alu 0 133 84 2185 105 29 20 chr12 100601181 100601487 -43184968 - AluSx SINE Alu -2 310 2 261 324 27 45 chr12 100601538 100601649 -43184806 + MIR SINE MIR 42 150 -58 1779 148 0 4 chr12 100601846 100602109 -43184346 - AluSx SINE Alu -2 310 49 2323 100 0 16 chr12 100602118 100602429 -43184026 - AluSc SINE Alu -3 306 1 1135 146 222 42 chr12 100602623 100602898 -43183557 - AluSx SINE Alu 0 318 1 2050 86 23 36 chr12 100603608 100603911 -43182544 - AluSp SINE Alu -14 299 1 2073 136 76 8 chr12 100605110 100605478 -43180977 - MER65A LTR ERV1 0 445 53 673 256 81 5 chr12 100605836 100606047 -43180408 - MER65A LTR ERV1 -168 277 51 2047 128 42 0 chr12 100606246 100606535 -43179920 - AluSx SINE Alu -11 301 1 1903 182 76 8 chr12 100606681 100607050 -43179405 - MSTD LTR MaLR -2 394 1 261 241 48 0 chr12 100607378 100607461 -43178994 - L1ME LINE L1 -318 5848 5762 225 0 0 0 chr12 100607788 100607813 -43178642 + (T)n Simple_repeat Simple_repeat 1 25 0 2518 63 0 0 chr12 100608237 100608538 -43177917 - AluY SINE Alu -10 301 1 2296 111 0 0 chr12 100609459 100609757 -43176698 + AluSg SINE Alu 1 298 -12 203 286 271 0 chr12 100609870 100609940 -43176515 + L2 LINE L2 3151 3239 -33 376 266 37 0 chr12 100610439 100610549 -43175906 + MIR SINE MIR 47 163 -45 255 323 92 27 chr12 100610578 100610661 -43175794 - L2 LINE L2 -4 3309 3233 1719 174 23 16 chr12 100610661 100610971 -43175484 + AluJb SINE Alu 1 312 0 255 323 92 27 chr12 100610971 100611181 -43175274 - L2 LINE L2 -80 3233 2997 555 276 89 36 chr12 100611182 100611220 -43175235 + L2 LINE L2 1805 1840 -1474 2214 105 3 3 chr12 100611220 100611515 -43174940 - AluSg SINE Alu -15 295 1 555 276 89 36 chr12 100611515 100611813 -43174642 + L2 LINE L2 1840 2159 -1155 2285 132 17 13 chr12 100611813 100612216 -43174239 - MER65A LTR ERV1 0 445 1 2149 133 7 0 chr12 100613305 100613605 -43172850 - AluSx SINE Alu -10 302 1 401 136 0 0 chr12 100613606 100613665 -43172790 - AluJo SINE Alu -15 297 239 1089 258 137 58 chr12 100613666 100614402 -43172053 - LTR1B LTR ERV1 0 826 33 1150 189 66 9 chr12 100614408 100614636 -43171819 - AluJo SINE Alu -71 241 1 1052 170 76 52 chr12 100614678 100614900 -43171555 - MER33 DNA MER1_type -2289 296 64 2517 64 0 0 chr12 100614900 100615198 -43171257 - AluY SINE Alu -13 298 1 1052 170 76 52 chr12 100615198 100615264 -43171191 - MER33 DNA MER1_type -2521 64 1 995 319 55 16 chr12 100615270 100615816 -43170639 + L2 LINE L2 2158 2724 -590 2456 100 0 0 chr12 100615868 100616177 -43170278 + AluSx SINE Alu 1 309 -3 1885 118 0 4 chr12 100616186 100616423 -43170032 + AluSx SINE Alu 49 286 -26 198 103 0 0 chr12 100616423 100616452 -43170003 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1885 118 0 4 chr12 100616452 100616476 -43169979 + AluSx SINE Alu 286 309 -3 1251 131 0 0 chr12 100616476 100616644 -43169811 + AluSg/x SINE Alu 134 301 -11 228 171 0 0 chr12 100616644 100616679 -43169776 - Alu SINE Alu -267 36 2 822 156 0 22 chr12 100616815 100616950 -43169505 - FLAM_C SINE Alu 0 133 2 3627 185 60 50 chr12 100616960 100617719 -43168736 - MER21B LTR ERV1 0 863 94 2406 98 0 0 chr12 100617719 100618024 -43168431 - AluSq SINE Alu -8 305 1 3627 185 60 50 chr12 100618024 100618119 -43168336 - MER21B LTR ERV1 -769 94 1 1792 148 62 10 chr12 100618733 100619023 -43167432 + AluSx SINE Alu 1 305 -7 253 117 0 117 chr12 100620023 100620117 -43166338 - AluSg/x SINE Alu -7 293 211 927 176 97 0 chr12 100620242 100620407 -43166048 - AluJb SINE Alu 0 312 132 207 0 0 0 chr12 100620407 100620430 -43166025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1990 124 0 0 chr12 100620430 100620695 -43165760 - AluSx SINE Alu -27 285 21 1621 253 123 85 chr12 100620710 100620920 -43165535 + L2 LINE L2 1525 1725 -1589 2146 118 0 3 chr12 100620920 100621207 -43165248 - AluSg SINE Alu -24 286 1 1621 253 123 85 chr12 100621207 100621805 -43164650 + L2 LINE L2 1725 2386 -928 1929 147 9 101 chr12 100621805 100622167 -43164288 + MLT1B LTR MaLR 1 320 -70 2546 58 0 19 chr12 100622167 100622479 -43163976 - AluY SINE Alu -5 306 1 1929 147 9 101 chr12 100622479 100622544 -43163911 + MLT1B LTR MaLR 320 389 -1 1621 253 123 85 chr12 100622544 100622795 -43163660 + L2 LINE L2 2386 2626 -688 2036 185 63 27 chr12 100622807 100623250 -43163205 - LTR2B LTR ERV1 0 490 32 252 86 0 0 chr12 100623273 100623308 -43163147 + (TAG)n Simple_repeat Simple_repeat 1 35 0 441 149 0 14 chr12 100623308 100623382 -43163073 - AluYb8 SINE Alu -132 186 114 345 269 167 0 chr12 100623512 100623620 -43162835 + L2 LINE L2 2717 2842 -472 1861 191 0 6 chr12 100623620 100623934 -43162521 - AluJo SINE Alu 0 312 1 2229 107 3 0 chr12 100623971 100624262 -43162193 - AluSp SINE Alu -8 305 14 1655 164 0 65 chr12 100624290 100624613 -43161842 - AluJo SINE Alu -6 306 5 1757 151 27 30 chr12 100625059 100625358 -43161097 - AluJb SINE Alu 0 312 15 2486 51 0 74 chr12 100625359 100625695 -43160760 + AluY SINE Alu 1 311 0 199 291 113 28 chr12 100625932 100626073 -43160382 + MIR SINE MIR 96 248 -14 1730 140 10 36 chr12 100626447 100626554 -43159901 + L1PA16 LINE L1 5867 5975 -191 2254 114 0 3 chr12 100626554 100626860 -43159595 + AluSx SINE Alu 1 305 -7 1730 140 10 36 chr12 100626860 100627060 -43159395 + L1PA16 LINE L1 5975 6166 0 615 129 0 11 chr12 100627316 100627409 -43159046 - AluSg/x SINE Alu -90 222 131 41 48 0 0 chr12 100627498 100627560 -43158895 + AT_rich Low_complexity Low_complexity 1 62 0 345 294 10 0 chr12 100627893 100627995 -43158460 + MIR SINE MIR 49 151 -111 1879 130 8 0 chr12 100627995 100628257 -43158198 + AluSx SINE Alu 1 264 -48 2658 58 0 0 chr12 100628911 100629221 -43157234 - AluY SINE Alu -1 310 1 180 354 118 20 chr12 100629222 100629417 -43157038 + L2 LINE L2 1802 2015 -1299 311 196 93 10 chr12 100629540 100629637 -43156818 - MIR SINE MIR -76 186 82 293 315 108 0 chr12 100630757 100630868 -43155587 - MIR SINE MIR -65 143 21 2450 50 4 0 chr12 100630967 100631282 -43155173 - AluSg SINE Alu 0 316 1 914 128 7 54 chr12 100631444 100631592 -43154863 + FLAM_C SINE Alu 3 143 0 1023 152 28 17 chr12 100631607 100631785 -43154670 + AluJb SINE Alu 120 299 -13 237 388 0 0 chr12 100632147 100632250 -43154205 - L3 LINE CR1 -182 1395 1293 1666 158 10 24 chr12 100632343 100632641 -43153814 - AluJo SINE Alu -18 294 1 1136 177 0 0 chr12 100632715 100632896 -43153559 - AluJb SINE Alu -129 183 3 339 188 100 100 chr12 100633007 100633177 -43153278 - MIR SINE MIR -91 171 2 2294 88 23 16 chr12 100633559 100633867 -43152588 + AluSg SINE Alu 1 310 0 189 0 0 0 chr12 100634655 100634676 -43151779 + (A)n Simple_repeat Simple_repeat 1 21 0 941 166 38 0 chr12 100636009 100636166 -43150289 - MER3 DNA MER1_type -1 208 46 2278 132 0 0 chr12 100636202 100636512 -43149943 + AluSx SINE Alu 1 310 -2 1721 136 3 60 chr12 100636713 100637015 -43149440 - AluJb SINE Alu -19 293 9 2373 87 3 7 chr12 100637031 100637341 -43149114 - AluSc SINE Alu 0 309 1 239 310 37 48 chr12 100637345 100637532 -43148923 + L2 LINE L2 2073 2257 -1057 1782 164 23 10 chr12 100637648 100637953 -43148502 + AluSx SINE Alu 1 309 -3 476 185 102 19 chr12 100637980 100638088 -43148367 - FLAM_A SINE Alu -1 141 25 631 251 39 94 chr12 100638088 100638418 -43148037 + L2 LINE L2 2228 2539 -775 274 318 82 48 chr12 100638428 100638852 -43147603 + L2 LINE L2 2643 3188 -84 2340 111 0 0 chr12 100638852 100639149 -43147306 - AluSx SINE Alu -15 297 1 274 318 82 48 chr12 100639149 100639234 -43147221 + L2 LINE L2 3188 3269 -3 216 346 75 45 chr12 100639271 100639636 -43146819 - L2 LINE L2 -488 2826 2440 1368 82 62 215 chr12 100639636 100639989 -43146466 - AluSq SINE Alu -14 299 1 216 346 75 45 chr12 100639989 100640128 -43146327 - L2 LINE L2 -874 2440 2307 1555 144 122 11 chr12 100640270 100640533 -43145922 - AluSg1 SINE Alu -17 292 1 1820 167 0 3 chr12 100640573 100640873 -43145582 + AluJb SINE Alu 1 299 -13 244 191 0 0 chr12 100640873 100640920 -43145535 - L2 LINE L2 -9 3304 3258 2053 134 13 3 chr12 100641320 100641618 -43144837 - AluSx SINE Alu -11 301 1 1660 154 44 54 chr12 100642527 100642825 -43143630 + AluJo SINE Alu 3 297 -15 2194 124 0 6 chr12 100643308 100643623 -43142832 + AluSq SINE Alu 1 313 0 2261 121 3 0 chr12 100643940 100644247 -43142208 - AluSp SINE Alu -5 308 1 2121 103 3 20 chr12 100644826 100645127 -43141328 - AluSx SINE Alu -16 296 1 2252 110 0 7 chr12 100645133 100645441 -43141014 - AluY SINE Alu -5 306 1 277 169 34 17 chr12 100645822 100645881 -43140574 - MER103 DNA DNA -55 111 52 307 287 10 10 chr12 100646221 100646322 -43140133 + MIR SINE MIR 53 153 -109 1592 167 0 4 chr12 100647219 100647477 -43138978 + AluJb SINE Alu 52 308 -4 2262 100 10 10 chr12 100647819 100648128 -43138327 - AluSx SINE Alu -3 309 1 2575 62 0 0 chr12 100648134 100648440 -43138015 - AluY SINE Alu -5 306 1 2222 126 0 7 chr12 100648505 100648815 -43137640 - AluSg SINE Alu 0 310 3 284 228 43 33 chr12 100648822 100648914 -43137541 + MIR SINE MIR 95 187 -75 2106 111 54 0 chr12 100648979 100649276 -43137179 + AluSq SINE Alu 1 313 0 1133 270 48 11 chr12 100649297 100649653 -43136802 + L1ME3A LINE L1 5429 5797 -373 1032 154 12 12 chr12 100649657 100649826 -43136629 + FRAM SINE Alu 1 169 -7 251 207 98 12 chr12 100649868 100649950 -43136505 + L1ME3A LINE L1 5861 5949 -221 2233 136 3 0 chr12 100650023 100650332 -43136123 + AluSx SINE Alu 2 311 -1 1378 155 87 45 chr12 100651006 100651270 -43135185 + AluJo SINE Alu 1 275 -37 2012 139 0 7 chr12 100651799 100652093 -43134362 - AluSx SINE Alu -20 292 1 332 261 80 14 chr12 100652237 100652375 -43134080 + L1ME LINE L1 5672 5818 -303 2309 101 7 0 chr12 100652388 100652685 -43133770 - AluSp SINE Alu -14 299 1 1509 187 0 81 chr12 100652705 100653026 -43133429 - AluJo SINE Alu -17 295 1 8976 158 28 12 chr12 100653026 100654385 -43132070 + ERVL-D LTR ERVL 4013 5378 -276 279 79 0 0 chr12 100654385 100654423 -43132032 + (TA)n Simple_repeat Simple_repeat 1 38 0 8976 158 28 12 chr12 100654423 100654704 -43131751 + ERVL-D LTR ERVL 5378 5653 -1 1002 100 60 0 chr12 100654705 100654855 -43131600 + MLT2D LTR ERVL 1 159 -255 2027 136 0 31 chr12 100655010 100655327 -43131128 - AluJb SINE Alu -5 307 1 1281 254 64 17 chr12 100655733 100656079 -43130376 - LTR16A LTR ERVL 0 450 89 24 0 0 0 chr12 100656336 100656360 -43130095 + AT_rich Low_complexity Low_complexity 1 24 0 518 265 30 70 chr12 100656906 100656976 -43129479 - MIR SINE MIR -40 222 151 2389 99 0 3 chr12 100656976 100657289 -43129166 - AluSx SINE Alu 0 312 1 518 265 30 70 chr12 100657289 100657448 -43129007 - MIR SINE MIR -111 151 2 1811 146 43 130 chr12 100657738 100658130 -43128325 - Looper DNA T2_type -1013 545 120 1194 115 31 5 chr12 100658130 100658321 -43128134 + L1MA3 LINE L1 6110 6305 0 1811 146 43 130 chr12 100658321 100658474 -43127981 - Looper DNA T2_type -1438 120 48 2068 116 55 0 chr12 100658474 100658767 -43127688 - AluSx SINE Alu -3 309 1 1811 146 43 130 chr12 100658767 100658780 -43127675 - Looper DNA T2_type -1510 48 35 321 276 141 25 chr12 100658832 100658931 -43127524 - MIR SINE MIR -75 187 101 2197 122 0 10 chr12 100658931 100659242 -43127213 + AluSg SINE Alu 3 310 0 321 276 141 25 chr12 100659242 100659305 -43127150 - MIR SINE MIR -161 101 6 2213 114 3 0 chr12 100659335 100659632 -43126823 - AluSq SINE Alu -15 298 1 266 185 31 0 chr12 100659691 100659756 -43126699 - L1MC4 LINE L1 -1336 6706 6640 1193 90 83 0 chr12 100659795 100659951 -43126504 - AluSq SINE Alu -140 173 5 5045 41 2 8 chr12 100659976 100660587 -43125868 - L1PA5 LINE L1 0 6154 5548 312 279 0 13 chr12 100660635 100660714 -43125741 + L2 LINE L2 3178 3255 -17 197 261 0 0 chr12 100660674 100660720 -43125735 + MIR SINE MIR 212 257 -5 * 2434 80 3 0 chr12 100661084 100661385 -43125070 - AluSc SINE Alu -7 302 1 1978 159 0 9 chr12 100661428 100661743 -43124712 - AluSx SINE Alu 0 312 1 293 0 27 0 chr12 100661972 100662009 -43124446 + (TTA)n Simple_repeat Simple_repeat 2 39 0 834 197 7 0 chr12 100662018 100662165 -43124290 - AluJb SINE Alu -30 282 135 1661 176 7 7 chr12 100662192 100662487 -43123968 + AluSx SINE Alu 1 295 -17 29 28 0 0 chr12 100662660 100662696 -43123759 + AT_rich Low_complexity Low_complexity 1 36 0 866 220 217 98 chr12 100662757 100663258 -43123197 + MLT1G1 LTR MaLR 31 595 0 192 234 0 78 chr12 100663260 100663324 -43123131 + MIR3 SINE MIR 110 168 -40 446 275 144 60 chr12 100664721 100664951 -43121504 + MLT1K LTR MaLR 150 359 -229 2318 78 0 3 chr12 100664951 100665280 -43121175 + AluY SINE Alu 1 328 0 446 275 144 60 chr12 100665280 100665451 -43121004 + MLT1K LTR MaLR 359 586 -2 240 206 0 43 chr12 100666059 100666151 -43120304 + T-rich Low_complexity Low_complexity 3 90 0 196 296 56 32 chr12 100666521 100666646 -43119809 + L2 LINE L2 3152 3279 -34 1735 207 0 0 chr12 100666650 100666945 -43119510 - AluJb SINE Alu -17 295 1 446 186 177 35 chr12 100666956 100667069 -43119386 - AluSg1 SINE Alu -179 130 2 1985 116 24 7 chr12 100667824 100668118 -43118337 - AluSx SINE Alu -13 299 1 784 158 53 0 chr12 100668118 100668251 -43118204 - AluJo SINE Alu -171 141 2 736 217 36 0 chr12 100668254 100668420 -43118035 - MER58A DNA MER1_type -9 215 44 1837 165 0 28 chr12 100668585 100668906 -43117549 - AluJb SINE Alu 0 312 1 234 151 38 38 chr12 100668907 100668960 -43117495 + MLT1J LTR MaLR 428 480 -31 2280 109 0 19 chr12 100670389 100670701 -43115754 - AluSg SINE Alu -4 306 1 1955 124 14 3 chr12 100671268 100671550 -43114905 + AluSx SINE Alu 1 285 -27 1789 133 51 48 chr12 100671729 100672022 -43114433 + AluSq SINE Alu 1 294 -19 2630 36 0 7 chr12 100672286 100672587 -43113868 + AluY SINE Alu 1 299 -12 542 251 72 5 chr12 100673037 100673244 -43113211 - L1ME4a LINE L1 -264 5857 5637 1641 172 76 3 chr12 100673325 100673615 -43112840 - AluSx SINE Alu -1 311 1 2093 96 46 0 chr12 100673776 100674057 -43112398 - AluSq SINE Alu -14 299 6 2211 86 4 0 chr12 100674731 100675009 -43111446 - AluSp SINE Alu -8 305 27 2529 85 0 0 chr12 100675107 100675413 -43111042 - AluSq SINE Alu -7 306 1 1155 162 88 108 chr12 100675750 100676047 -43110408 + AluJb SINE Alu 3 293 -9 584 199 37 6 chr12 100676221 100676232 -43110223 + Charlie7 DNA MER1_type 2432 2441 -171 2246 118 0 0 chr12 100676232 100676537 -43109918 + AluSx SINE Alu 1 305 -7 584 199 37 6 chr12 100676537 100676686 -43109769 + Charlie7 DNA MER1_type 2441 2597 -15 296 343 126 7 chr12 100676887 100677097 -43109358 + MIR SINE MIR 3 230 -32 272 312 75 0 chr12 100677157 100677250 -43109205 + MIR SINE MIR 2 101 -161 21 0 0 0 chr12 100677255 100677276 -43109179 + AT_rich Low_complexity Low_complexity 1 21 0 2007 104 4 4 chr12 100677309 100677579 -43108876 - AluSx SINE Alu -16 296 27 203 146 24 0 chr12 100677628 100677669 -43108786 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1292 159 0 61 chr12 100677684 100677948 -43108507 - AluJo SINE Alu 0 312 65 305 317 99 25 chr12 100678132 100678293 -43108162 + MER5B DNA MER1_type 6 178 0 236 261 29 0 chr12 100678579 100678648 -43107807 - MIR3 SINE MIR -20 188 118 906 125 0 8 chr12 100678651 100678779 -43107676 + FLAM_C SINE Alu 1 127 -16 1884 153 7 7 chr12 100678865 100679165 -43107290 - AluJb SINE Alu -12 300 1 2275 112 3 0 chr12 100679695 100679998 -43106457 + AluSc SINE Alu 1 304 -5 278 167 21 0 chr12 100679998 100680046 -43106409 + HY1 scRNA scRNA 2 50 -62 1830 171 31 0 chr12 100680310 100680603 -43105852 - AluJb SINE Alu -10 302 1 1994 143 0 17 chr12 100681138 100681439 -43105016 - AluSx SINE Alu -16 296 1 812 164 0 0 chr12 100681462 100681578 -43104877 + FLAM_C SINE Alu 1 116 -27 579 280 82 40 chr12 100681619 100681785 -43104670 + HsTC2 DNA Tc2 246 404 -1494 2207 129 15 24 chr12 100681785 100682125 -43104330 - MER1B DNA MER1_type 0 337 1 579 280 82 40 chr12 100682125 100682408 -43104047 + HsTC2 DNA Tc2 404 756 -1142 2334 96 0 0 chr12 100682408 100682701 -43103754 - AluSx SINE Alu -19 293 1 579 280 82 40 chr12 100682701 100682770 -43103685 + HsTC2 DNA Tc2 756 821 -1077 1745 161 10 30 chr12 100683152 100683456 -43102999 - AluJb SINE Alu -14 298 1 2450 83 0 10 chr12 100683999 100684311 -43102144 + AluY SINE Alu 1 309 -2 197 338 25 12 chr12 100684318 100684398 -43102057 - MER5A DNA MER1_type -10 179 99 1764 152 14 7 chr12 100684417 100684719 -43101736 + AluJb SINE Alu 5 308 0 1217 118 0 0 chr12 100685191 100685352 -43101103 + AluJb SINE Alu 132 292 -20 2317 87 3 0 chr12 100685825 100686123 -43100332 - AluSx SINE Alu -13 299 1 278 281 45 0 chr12 100687572 100687661 -43098794 + L2 LINE L2 3202 3294 -19 2277 98 0 40 chr12 100687731 100688056 -43098399 - AluSq SINE Alu -1 312 1 1129 137 15 10 chr12 100688062 100688281 -43098174 - AluSg/x SINE Alu 0 304 85 1232 82 0 0 chr12 100688299 100688446 -43098009 - AluSq/x SINE Alu -165 147 1 410 82 55 14 chr12 100688455 100688528 -43097927 - L1MB4 LINE L1 0 6180 6105 1321 182 13 4 chr12 100688672 100688903 -43097552 + AluJb SINE Alu 72 304 -8 262 203 47 0 chr12 100688972 100689036 -43097419 - L3 LINE CR1 -189 1388 1322 387 179 0 0 chr12 100689495 100689562 -43096893 + MER66B LTR ERV1 1 67 -419 1448 96 0 50 chr12 100689564 100689755 -43096700 + MER66B-int LTR ERV1 6469 6649 -27 2000 64 24 119 chr12 100689755 100690083 -43096372 + AluY SINE Alu 1 297 -14 1448 96 0 50 chr12 100690083 100690109 -43096346 + MER66B-int LTR ERV1 6649 6675 -1 1902 158 3 46 chr12 100690110 100690188 -43096267 + MER66B LTR ERV1 1 81 -405 2321 97 3 0 chr12 100690188 100690488 -43095967 + AluSp SINE Alu 2 302 -11 1902 158 3 46 chr12 100690488 100690757 -43095698 + MER66B LTR ERV1 81 333 -153 1738 144 29 16 chr12 100690784 100691124 -43095331 - MER4A LTR ERV1 0 664 262 612 116 42 11 chr12 100691125 100691220 -43095235 - MER4A LTR ERV1 -566 98 1 561 110 0 0 chr12 100691220 100691292 -43095163 + MER66B LTR ERV1 415 486 0 416 102 17 0 chr12 100691943 100692002 -43094453 - AluSp/q SINE Alu -24 289 230 246 258 0 16 chr12 100692889 100692951 -43093504 + G-rich Low_complexity Low_complexity 3 63 0 790 257 72 46 chr12 100692951 100692996 -43093459 + L1MC5 LINE L1 7507 7549 -412 2133 133 0 9 chr12 100692996 100693311 -43093144 + AluSq SINE Alu 1 312 -1 790 257 72 46 chr12 100693311 100693708 -43092747 + L1MC5 LINE L1 7549 7915 -46 207 0 0 0 chr12 100693845 100693868 -43092587 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1055 147 0 41 chr12 100693868 100694038 -43092417 - AluSg/x SINE Alu -32 277 115 22 0 0 0 chr12 100694090 100694112 -43092343 + AT_rich Low_complexity Low_complexity 1 22 0 386 257 50 36 chr12 100694167 100694307 -43092148 - MIR SINE MIR -110 152 11 809 277 114 18 chr12 100694371 100694755 -43091700 + L2 LINE L2 2682 3140 -173 1660 180 0 41 chr12 100694755 100695072 -43091383 - AluJo SINE Alu -8 304 1 809 277 114 18 chr12 100695072 100695265 -43091190 + L2 LINE L2 3140 3313 0 369 290 16 12 chr12 100695399 100695516 -43090939 + MIR SINE MIR 43 163 -45 186 167 0 0 chr12 100696408 100696444 -43090011 + GA-rich Low_complexity Low_complexity 1 36 0 2479 101 45 28 chr12 100696463 100696821 -43089634 - THE1B LTR MaLR 0 364 1 2281 68 18 0 chr12 100697684 100697965 -43088490 - AluSp SINE Alu -27 286 1 3250 112 6 15 chr12 100698128 100698594 -43087861 - L1PA14 LINE L1 0 6161 5700 1233 81 6 0 chr12 100698594 100698755 -43087700 + L1PA14 LINE L1 5571 5732 -429 894 45 0 0 chr12 100698985 100699096 -43087359 + (CGTAA)n Simple_repeat Simple_repeat 3 113 0 1164 89 18 24 chr12 100699899 100700068 -43086387 - AluSx SINE Alu -144 168 1 863 178 6 6 chr12 100700092 100700249 -43086206 + AluJb SINE Alu 120 276 -36 783 206 20 3 chr12 100700250 100700559 -43085896 + GA-rich Low_complexity Low_complexity 1 314 0 461 276 78 69 chr12 100701096 100701313 -43085142 - MIR SINE MIR -36 226 8 3464 109 2 42 chr12 100701478 100701982 -43084473 - MER1A DNA MER1_type 0 529 46 497 259 30 7 chr12 100702271 100702406 -43084049 + L2 LINE L2 3174 3311 -2 306 0 0 0 chr12 100702486 100702520 -43083935 + (A)n Simple_repeat Simple_repeat 1 34 0 902 277 45 0 chr12 100702521 100702741 -43083714 + MIR SINE MIR 2 231 -31 321 321 27 0 chr12 100702780 100702892 -43083563 - L2 LINE L2 -40 3273 3159 995 303 86 0 chr12 100702951 100703324 -43083131 - LTR16A LTR ERVL -29 421 17 1026 307 192 28 chr12 100703386 100703446 -43083009 - L2 LINE L2 -269 3044 2995 353 57 0 19 chr12 100703446 100703499 -43082956 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1026 307 192 28 chr12 100703499 100704155 -43082300 - L2 LINE L2 -318 2995 2210 259 217 146 128 chr12 100704283 100704391 -43082064 - MLT1H LTR MaLR -226 323 218 1894 133 20 20 chr12 100704391 100704692 -43081763 + AluJb SINE Alu 1 301 -11 259 217 146 128 chr12 100704692 100704809 -43081646 - MLT1H LTR MaLR -331 218 94 332 320 123 26 chr12 100704879 100704909 -43081546 - L2 LINE L2 -1113 2201 2175 2505 84 0 3 chr12 100704909 100705220 -43081235 + AluSg SINE Alu 1 310 0 332 320 123 26 chr12 100705220 100705458 -43080997 - L2 LINE L2 -1139 2175 1907 218 404 38 25 chr12 100705589 100705829 -43080626 - L2 LINE L2 -443 2871 2629 234 0 0 0 chr12 100705922 100705948 -43080507 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 2029 129 0 0 chr12 100705950 100706230 -43080225 - AluSx SINE Alu -32 280 1 24 67 0 0 chr12 100707041 100707086 -43079369 + AT_rich Low_complexity Low_complexity 1 45 0 1814 138 14 21 chr12 100707647 100707803 -43078652 - AluJo SINE Alu -25 287 132 2443 96 0 6 chr12 100707803 100708116 -43078339 - AluSx SINE Alu -1 311 1 1814 138 14 21 chr12 100708116 100708248 -43078207 - AluJo SINE Alu -180 132 1 339 285 31 31 chr12 100709406 100709536 -43076919 + L2 LINE L2 3184 3313 0 450 254 49 8 chr12 100709711 100709833 -43076622 + MIR SINE MIR 59 185 -77 945 184 51 15 chr12 100710004 100710200 -43076255 + AluJo SINE Alu 87 289 -23 1591 192 0 17 chr12 100710366 100710657 -43075798 - AluJb SINE Alu -13 299 14 2367 79 6 19 chr12 100711484 100711800 -43074655 + AluSx SINE Alu 1 312 0 259 331 28 14 chr12 100712380 100712522 -43073933 + MER5A DNA MER1_type 1 144 -45 2481 44 0 0 chr12 100712531 100712824 -43073631 + AluY SINE Alu 1 293 -18 616 148 0 20 chr12 100713085 100713186 -43073269 - AluSg/x SINE Alu -7 303 205 1858 137 0 35 chr12 100713534 100713849 -43072606 + AluJo SINE Alu 9 312 0 821 270 14 9 chr12 100714136 100714358 -43072097 + MIR SINE MIR 23 245 -17 1863 130 7 4 chr12 100714381 100714650 -43071805 - AluJo SINE Alu -17 295 26 1742 166 35 3 chr12 100714976 100715260 -43071195 - AluJb SINE Alu -19 293 1 319 68 233 0 chr12 100716408 100716554 -43069901 + (GGATG)n Simple_repeat Simple_repeat 1 180 0 333 66 216 15 chr12 100716641 100717181 -43069274 + (GGATG)n Simple_repeat Simple_repeat 1 648 0 27 0 0 0 chr12 100717550 100717577 -43068878 + AT_rich Low_complexity Low_complexity 1 27 0 2314 105 0 0 chr12 100717579 100717874 -43068581 + AluSx SINE Alu 1 295 -17 1264 185 20 64 chr12 100718020 100718318 -43068137 - AluJo SINE Alu -27 285 1 2339 47 4 0 chr12 100718456 100718731 -43067724 + AluY SINE Alu 1 276 -35 226 94 0 0 chr12 100718731 100718796 -43067659 + AluY SINE Alu 252 316 0 24 67 0 0 chr12 100719186 100719231 -43067224 + AT_rich Low_complexity Low_complexity 1 45 0 1894 153 0 17 chr12 100720926 100721227 -43065228 - AluJb SINE Alu -13 299 4 670 294 57 16 chr12 100721280 100721528 -43064927 - MIR SINE MIR -2 260 3 202 27 0 54 chr12 100721629 100721666 -43064789 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2070 125 0 4 chr12 100721666 100721947 -43064508 - AluSx SINE Alu -32 280 1 22 35 0 0 chr12 100722315 100722344 -43064111 + AT_rich Low_complexity Low_complexity 1 29 0 530 245 46 108 chr12 100722514 100723614 -43062841 + L1MC4 LINE L1 6733 7751 -291 1832 154 13 7 chr12 100723858 100724163 -43062292 - AluJb SINE Alu -5 307 1 1727 148 23 29 chr12 100724468 100724778 -43061677 + AluJo SINE Alu 1 308 -4 188 122 24 0 chr12 100725116 100725157 -43061298 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 1868 152 0 23 chr12 100725688 100725990 -43060465 - AluJb SINE Alu -17 295 1 31 88 0 0 chr12 100725990 100726070 -43060385 + AT_rich Low_complexity Low_complexity 1 80 0 1578 120 0 0 chr12 100726252 100726461 -43059994 - AluSg/x SINE Alu -19 293 85 2281 98 20 3 chr12 100727752 100728057 -43058398 + L1PB2 LINE L1 5839 6148 -3 1153 108 108 0 chr12 100728484 100728651 -43057804 + MER30B DNA MER1_type 2 186 -4 1300 82 35 6 chr12 100728822 100728993 -43057462 - AluSg/x SINE Alu -12 300 125 241 273 117 84 chr12 100729119 100729205 -43057250 - MIR3 SINE MIR -3 205 123 1999 122 0 17 chr12 100729205 100729492 -43056963 + AluSx SINE Alu 1 282 -30 326 23 0 23 chr12 100729496 100729540 -43056915 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 241 273 117 84 chr12 100729540 100729602 -43056853 - MIR3 SINE MIR -87 121 47 227 280 13 13 chr12 100729600 100729675 -43056780 + MIR SINE MIR 188 262 0 * 250 247 27 14 chr12 100729661 100729734 -43056721 + L2 LINE L2 3169 3242 -71 707 226 156 27 chr12 100729773 100730099 -43056356 - L2 LINE L2 -231 3082 2719 548 241 222 35 chr12 100730099 100730302 -43056153 - L2 LINE L2 -2095 1219 979 226 206 79 16 chr12 100730439 100730502 -43055953 + L2 LINE L2 3176 3242 -71 2133 132 3 0 chr12 100731107 100731243 -43055212 + AluSx SINE Alu 1 135 -177 1767 91 0 0 chr12 100731243 100731463 -43054992 + AluSg SINE Alu 1 220 -90 2133 132 3 0 chr12 100731463 100731622 -43054833 + AluSx SINE Alu 135 297 -15 465 282 233 5 chr12 100731869 100732075 -43054380 - MIR SINE MIR -8 254 2 325 389 51 47 chr12 100732973 100733248 -43053207 - L2 LINE L2 -2 3270 2995 417 90 0 0 chr12 100733352 100733419 -43053036 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2219 117 0 0 chr12 100733420 100733702 -43052753 - AluSx SINE Alu -30 282 1 2151 111 0 111 chr12 100733722 100734099 -43052356 + MER1B DNA MER1_type 1 335 -2 293 194 30 30 chr12 100734335 100734402 -43052053 - MIR SINE MIR -20 242 176 849 216 7 7 chr12 100734442 100734595 -43051860 + AluJ SINE Alu 1 153 -159 233 196 0 0 chr12 100734609 100734655 -43051800 + G-rich Low_complexity Low_complexity 1 46 0 25 51 0 0 chr12 100736026 100736065 -43050390 + AT_rich Low_complexity Low_complexity 1 39 0 981 139 11 86 chr12 100736398 100736585 -43049870 + AluJ SINE Alu 129 301 -11 259 203 108 0 chr12 100737810 100737884 -43048571 + L1MC4 LINE L1 7960 8041 -1 269 254 48 0 chr12 100738343 100738406 -43048049 + MER45 DNA AcHobo 1515 1580 -1 1200 265 112 106 chr12 100738464 100738502 -43047953 + L1M4 LINE L1 2798 2834 -3312 2201 117 0 10 chr12 100738502 100738810 -43047645 - AluSx SINE Alu -7 305 1 1200 265 112 106 chr12 100738810 100739358 -43047097 + L1M4 LINE L1 2834 3377 -2769 2125 108 24 0 chr12 100739358 100739646 -43046809 + AluY SINE Alu 1 295 -16 1200 265 112 106 chr12 100739646 100740084 -43046371 + L1M4 LINE L1 3377 3811 -2335 5829 60 0 1 chr12 100740084 100740771 -43045684 + L1PA8 LINE L1 5487 6172 0 1200 265 112 106 chr12 100740771 100741713 -43044742 + L1M4 LINE L1 3811 4779 -1367 1133 225 259 0 chr12 100741795 100742150 -43044305 + L2 LINE L2 775 1221 -2093 1208 231 146 31 chr12 100742150 100742678 -43043777 + L2 LINE L2 2721 3313 0 440 175 48 87 chr12 100742794 100742897 -43043558 - MER58 DNA MER1_type -2321 99 1 295 195 81 73 chr12 100742919 100743042 -43043413 + L1ME4a LINE L1 5671 5794 -327 904 203 25 0 chr12 100743123 100743281 -43043174 - FAM SINE Alu -13 162 1 2420 86 0 3 chr12 100743311 100743613 -43042842 + AluSg SINE Alu 1 301 -9 1763 147 33 0 chr12 100744461 100744734 -43041721 - AluJo SINE Alu -7 305 24 477 206 71 43 chr12 100744773 100744914 -43041541 + L1ME4a LINE L1 5977 6121 0 2182 106 0 7 chr12 100745461 100745766 -43040689 - AluSq SINE Alu 0 303 1 945 263 41 21 chr12 100746377 100746711 -43039744 - L2 LINE L2 -1204 2110 1769 1781 153 7 33 chr12 100746711 100747011 -43039444 - AluJo SINE Alu -20 292 1 210 259 0 17 chr12 100747143 100747201 -43039254 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 1878 140 20 14 chr12 100747281 100747574 -43038881 - AluJb SINE Alu -17 295 1 225 276 130 68 chr12 100747771 100747963 -43038492 + MIR SINE MIR 19 230 -32 599 270 75 6 chr12 100748076 100748250 -43038205 + MIR SINE MIR 46 231 -31 1762 147 10 23 chr12 100748292 100748591 -43037864 - AluJb SINE Alu -13 299 5 2183 123 3 0 chr12 100749148 100749457 -43036998 + AluSx SINE Alu 1 310 -2 336 219 0 0 chr12 100749545 100749609 -43036846 - L1MB2 LINE L1 -7 6164 6101 2083 131 6 3 chr12 100750060 100750372 -43036083 - AluSq SINE Alu 0 313 1 298 326 50 14 chr12 100750394 100750535 -43035920 + L2 LINE L2 3160 3305 -8 571 334 108 66 chr12 100750541 100751592 -43034863 - L2 LINE L2 -341 2973 1879 466 255 10 0 chr12 100752924 100753022 -43033433 - L2 LINE L2 0 3272 3174 2162 123 7 0 chr12 100754053 100754363 -43032092 - AluSx SINE Alu 0 312 1 2207 105 0 14 chr12 100754710 100755004 -43031451 - AluSq SINE Alu -23 290 1 243 278 114 90 chr12 100755437 100755692 -43030763 + MIR SINE MIR 2 262 0 2077 140 0 9 chr12 100756117 100756432 -43030023 + AluSx SINE Alu 1 312 0 2020 136 7 3 chr12 100757512 100757806 -43028649 + AluSx SINE Alu 1 295 -17 2198 97 3 3 chr12 100758033 100758321 -43028134 - AluSx SINE Alu -12 300 13 341 225 43 7 chr12 100758571 100758709 -43027746 + CT-rich Low_complexity Low_complexity 3 145 0 309 273 182 11 chr12 100758853 100759040 -43027415 + L2 LINE L2 3087 3305 -8 238 283 101 40 chr12 100759164 100759263 -43027192 + L2 LINE L2 3168 3272 0 1904 148 0 33 chr12 100759557 100759862 -43026593 + AluJo SINE Alu 3 297 -15 389 195 0 26 chr12 100760449 100760526 -43025929 + MIR SINE MIR 28 102 -160 1672 161 97 10 chr12 100760530 100760840 -43025615 - MER2 DNA MER2_type 0 345 9 2073 138 0 22 chr12 100761235 100761547 -43024908 + AluJo SINE Alu 1 305 -7 1077 159 15 20 chr12 100762768 100762969 -43023486 - AluJo SINE Alu 0 312 113 298 281 15 84 chr12 100762998 100763201 -43023254 + MER5A DNA MER1_type 1 189 0 299 266 0 0 chr12 100763311 100763375 -43023080 - MER63 DNA MER1_type -317 744 681 2271 114 3 0 chr12 100763439 100763791 -43022664 - AluSx SINE Alu 0 356 4 2292 113 0 0 chr12 100764679 100764989 -43021466 + AluSx SINE Alu 1 310 -2 441 284 14 7 chr12 100765158 100765299 -43021156 + MIR SINE MIR 121 262 0 185 222 0 0 chr12 100765420 100765456 -43020999 + L2 LINE L2 3228 3263 -9 2257 102 3 10 chr12 100765524 100765837 -43020618 - AluSx SINE Alu -1 311 1 314 195 158 0 chr12 100766216 100766298 -43020157 - MER103 DNA DNA -55 111 17 842 195 0 19 chr12 100766619 100766773 -43019682 - FRAM SINE Alu -15 151 1 416 250 0 0 chr12 100766792 100766880 -43019575 - MER5A DNA MER1_type -87 102 15 22 35 0 0 chr12 100766919 100766948 -43019507 + AT_rich Low_complexity Low_complexity 1 29 0 345 258 67 25 chr12 100768479 100768599 -43017856 + L2 LINE L2 3189 3313 0 1237 159 0 5 chr12 100769523 100769712 -43016743 - MER5A DNA MER1_type 0 189 2 1291 238 41 76 chr12 100769792 100770446 -43016009 + L2 LINE L2 2688 3313 0 1894 38 0 0 chr12 100770922 100771200 -43015255 - AluY SINE Alu 0 349 72 878 161 0 91 chr12 100771206 100771392 -43015063 - AluJo SINE Alu -142 170 2 385 288 105 47 chr12 100771400 100771591 -43014864 - MIR SINE MIR -12 250 49 1734 181 9 19 chr12 100772177 100772201 -43014254 - AluJb SINE Alu 0 312 289 195 42 0 0 chr12 100772201 100772225 -43014230 + (TC)n Simple_repeat Simple_repeat 2 25 0 1734 181 9 19 chr12 100772225 100772515 -43013940 - AluJb SINE Alu -23 289 1 1977 123 62 3 chr12 100773403 100773695 -43012760 + AluSx SINE Alu 1 309 -3 2248 66 13 7 chr12 100774324 100774626 -43011829 + AluY SINE Alu 1 304 -7 1918 133 0 72 chr12 100774661 100774993 -43011462 - AluSx SINE Alu -4 308 1 2487 41 3 28 chr12 100775116 100775434 -43011021 - AluY SINE Alu -1 310 1 242 85 0 43 chr12 100775587 100775634 -43010821 + Alu SINE Alu 257 301 0 847 138 17 0 chr12 100775640 100775756 -43010699 - FLAM_C SINE Alu -15 118 1 2419 74 7 3 chr12 100775766 100776075 -43010380 - AluY SINE Alu -1 310 1 1789 137 15 0 chr12 100776075 100776345 -43010110 - AluSx SINE Alu -12 300 27 203 146 24 0 chr12 100776394 100776435 -43010020 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1084 168 0 90 chr12 100776450 100776718 -43009737 - AluJo SINE Alu 0 312 69 1957 149 0 7 chr12 100828299 100828608 -42957847 - AluJb SINE Alu -5 307 1 504 158 69 30 chr12 100828800 100828901 -42957554 + MER63 DNA MER1_type 2 732 -330 647 188 43 159 chr12 100828921 100829043 -42957412 - L1MEc LINE L1 -6116 280 164 270 26 0 0 chr12 100829043 100829082 -42957373 - AluY SINE Alu 0 308 270 647 188 43 159 chr12 100829082 100829198 -42957257 - L1MEc LINE L1 -6232 164 36 1865 151 27 0 chr12 100829239 100829537 -42956918 - AluJo SINE Alu -6 306 1 189 0 0 0 chr12 100829541 100829562 -42956893 + (T)n Simple_repeat Simple_repeat 1 21 0 346 214 22 11 chr12 100830129 100830218 -42956237 + MER67A LTR ERV1 452 541 -2 288 0 0 0 chr12 100830368 100830400 -42956055 + (A)n Simple_repeat Simple_repeat 1 32 0 2279 114 0 0 chr12 100830465 100830764 -42955691 + AluSx SINE Alu 1 299 -13 1306 115 0 0 chr12 100830986 100831169 -42955286 + AluSg/x SINE Alu 118 300 -10 635 87 78 10 chr12 100831179 100831282 -42955173 + L1MB5 LINE L1 6050 6159 -15 301 263 95 34 chr12 100831344 100831523 -42954932 - L1MC4a LINE L1 -1767 6041 5852 * 776 196 103 31 chr12 100831521 100831745 -42954710 - L1MC4 LINE L1 -460 7582 7343 394 264 33 33 chr12 100831763 100831884 -42954571 - L1MC4 LINE L1 -1197 6845 6725 381 308 76 22 chr12 100832400 100832585 -42953870 - MIR SINE MIR -62 200 6 1025 201 0 5 chr12 100832661 100832850 -42953605 - AluSg/x SINE Alu -20 290 103 2420 101 0 0 chr12 100832987 100833295 -42953160 - AluSg SINE Alu -2 308 1 265 250 31 10 chr12 100833544 100833640 -42952815 - L1ME4a LINE L1 -72 6049 5952 2269 113 0 7 chr12 100833750 100834052 -42952403 - AluSq SINE Alu -13 300 1 252 0 0 0 chr12 100834151 100834179 -42952276 + (T)n Simple_repeat Simple_repeat 1 28 0 6223 83 17 58 chr12 100834180 100835426 -42951029 - SVA Other Other -554 1383 433 227 243 40 40 chr12 100835794 100835868 -42950587 + MIR SINE MIR 103 176 -86 1167 237 209 24 chr12 100835932 100836477 -42949978 - L2 LINE L2 -366 2948 2303 681 112 200 32 chr12 100839684 100839809 -42946646 - AluJo SINE Alu -165 147 2 1834 163 3 7 chr12 100840555 100840844 -42945611 - AluSx SINE Alu -24 288 1 1280 274 76 42 chr12 100841825 100842448 -42944007 - L1ME3A LINE L1 -236 5926 5066 2410 50 7 0 chr12 100842448 100842758 -42943697 - AluY SINE Alu 0 312 1 1280 274 76 42 chr12 100842758 100842899 -42943556 - L1ME3A LINE L1 -1096 5066 4931 26 0 0 0 chr12 100843757 100843783 -42942672 + AT_rich Low_complexity Low_complexity 1 26 0 2079 83 105 0 chr12 100844148 100844424 -42942031 - AluSq SINE Alu -8 305 1 331 246 175 79 chr12 100844820 100845012 -42941443 - MER102b DNA MER1_type -1089 339 109 1751 171 0 17 chr12 100845012 100845326 -42941129 - AluJb SINE Alu 0 309 1 331 246 175 79 chr12 100845326 100845412 -42941043 - MER102b DNA MER1_type -1319 109 33 1276 120 0 0 chr12 100846207 100846374 -42940081 + AluSg/x SINE Alu 124 290 -22 354 327 19 0 chr12 100846424 100846528 -42939927 + MER91A DNA MER1_type 56 161 -35 729 219 112 0 chr12 100846591 100846796 -42939659 - MER20B DNA MER1_type -63 720 493 236 0 0 0 chr12 100846969 100846996 -42939459 - MER20B DNA MER1_type -537 246 220 198 0 0 0 chr12 100847081 100847103 -42939352 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1916 116 19 0 chr12 100847129 100847396 -42939059 - AluSx SINE Alu -40 272 1 1099 275 47 47 chr12 100847493 100847873 -42938582 + MLT1J LTR MaLR 58 440 -71 2261 153 68 12 chr12 100847873 100848273 -42938182 - MSTB LTR MaLR -2 424 3 1099 275 47 47 chr12 100848273 100848339 -42938116 + MLT1J LTR MaLR 439 504 -7 2233 125 3 0 chr12 100848725 100849029 -42937426 + AluSx SINE Alu 1 305 -7 2347 79 20 3 chr12 100849769 100850073 -42936382 + AluSg SINE Alu 1 309 -1 457 224 84 49 chr12 100850281 100850424 -42936031 - L2 LINE L2 0 3313 3166 241 269 63 57 chr12 100850506 100850681 -42935774 + L2 LINE L2 2386 2561 -753 2236 104 3 0 chr12 100850893 100851192 -42935263 + AluSc SINE Alu 1 300 -9 230 186 23 124 chr12 100851587 100851716 -42934739 + L1ME4a LINE L1 6005 6120 -1 308 308 112 54 chr12 100852587 100852918 -42933537 + L1M2 LINE L1 713 1062 -5787 812 159 80 0 chr12 100854222 100854398 -42932057 - L1MA8 LINE L1 -4 6287 6098 780 149 0 0 chr12 100854400 100854507 -42931948 - U6 snRNA snRNA 0 107 1 1169 138 10 25 chr12 100855206 100855402 -42931053 + AluJb SINE Alu 112 304 -8 340 329 133 7 chr12 100855761 100855904 -42930551 - L3 LINE CR1 -17 1560 1400 255 215 333 11 chr12 100856594 100856687 -42929768 + L2 LINE L2 3190 3312 -1 341 281 47 83 chr12 100857050 100857203 -42929252 - MIR SINE MIR 0 262 105 7358 53 18 34 chr12 100857203 100857236 -42929219 - SVA Other Other -683 1386 1354 287 49 24 0 chr12 100857236 100857277 -42929178 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7358 53 18 34 chr12 100857277 100858875 -42927580 - SVA Other Other -715 1354 54 324 0 0 0 chr12 100858875 100858911 -42927544 + (GGGAGA)n Simple_repeat Simple_repeat 4 39 0 341 281 47 83 chr12 100858911 100858946 -42927509 - MIR SINE MIR -155 107 78 9796 197 19 10 chr12 100859247 100860530 -42925925 + L1 LINE L1 3111 4381 -1765 243 0 0 0 chr12 100860530 100860557 -42925898 + (CA)n Simple_repeat Simple_repeat 2 28 0 9796 197 19 10 chr12 100860557 100860803 -42925652 + L1 LINE L1 4381 4623 -1523 1630 194 3 25 chr12 100860803 100861122 -42925333 + AluJo SINE Alu 1 312 0 9796 197 19 10 chr12 100861122 100861704 -42924751 + L1 LINE L1 4623 5242 -904 487 171 8 70 chr12 100861828 100861957 -42924498 + MER20 DNA MER1_type 88 208 -11 2028 126 7 17 chr12 100862265 100862567 -42923888 + AluSx SINE Alu 1 299 -13 201 308 266 7 chr12 100862730 100862873 -42923582 + MIR3 SINE MIR 8 187 -21 23 0 0 0 chr12 100863073 100863096 -42923359 + AT_rich Low_complexity Low_complexity 1 23 0 2902 83 8 6 chr12 100864234 100864595 -42921860 - THE1B LTR MaLR -2 362 1 5642 132 183 85 chr12 100866198 100866989 -42919466 + pTR5 LTR ERV1 276 988 -1450 2312 34 4 0 chr12 100866989 100867254 -42919201 - AluY SINE Alu -9 302 37 5642 132 183 85 chr12 100867254 100867887 -42918568 + pTR5 LTR ERV1 988 2295 -143 283 239 156 72 chr12 100868213 100868380 -42918075 + MER5A DNA MER1_type 9 189 0 227 310 112 26 chr12 100868388 100868504 -42917951 + L2 LINE L2 2870 2995 -277 21 36 0 0 chr12 100869315 100869343 -42917112 + AT_rich Low_complexity Low_complexity 1 28 0 259 310 138 7 chr12 100869386 100869531 -42916924 - MIR SINE MIR -1 261 98 * 518 206 0 96 chr12 100869528 100869664 -42916791 + L2 LINE L2 3190 3312 -1 257 241 149 0 chr12 100869662 100869749 -42916706 - MIR SINE MIR -161 101 2 * 1130 198 30 124 chr12 100869982 100870442 -42916013 + MER96B DNA MER1_type 1 417 0 348 199 42 58 chr12 100870683 100870810 -42915645 - L1ME LINE L1 -402 5719 5595 189 94 0 0 chr12 100871313 100871345 -42915110 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 2176 114 3 0 chr12 100871351 100871640 -42914815 - AluSq SINE Alu -23 290 1 1110 217 302 3 chr12 100871836 100872214 -42914241 - MLT1J LTR MaLR -16 495 5 574 256 13 103 chr12 100872260 100872443 -42914012 + L1MC4a LINE L1 5638 5785 -2023 1998 90 11 8 chr12 100872443 100872710 -42913745 - AluSx SINE Alu -44 268 1 574 256 13 103 chr12 100872710 100872827 -42913628 + L1MC4a LINE L1 5785 5911 -1897 1022 190 0 22 chr12 100872869 100873053 -42913402 - LTR40a LTR ERVL 0 519 340 24 67 0 0 chr12 100873370 100873415 -42913040 + AT_rich Low_complexity Low_complexity 1 45 0 731 200 33 0 chr12 100873418 100873538 -42912917 - FLAM_C SINE Alu -18 125 2 506 241 86 19 chr12 100873538 100873700 -42912755 - L1ME3A LINE L1 -296 5874 5702 4805 137 21 42 chr12 100873880 100873993 -42912462 - L1MB5 LINE L1 -15 6159 6045 2114 129 0 3 chr12 100873993 100874296 -42912159 - AluSx SINE Alu -10 302 1 4805 137 21 42 chr12 100874296 100875048 -42911407 - L1MB5 LINE L1 -129 6045 5314 219 342 0 13 chr12 100875097 100875160 -42911295 + MIR3 SINE MIR 98 161 -47 1283 151 4 88 chr12 100875160 100875218 -42911237 - MER20 DNA MER1_type 0 219 158 1859 151 6 31 chr12 100875218 100875536 -42910919 - AluJb SINE Alu -2 310 1 1283 151 4 88 chr12 100875536 100875716 -42910739 - MER20 DNA MER1_type -61 158 1 219 342 0 13 chr12 100875716 100875731 -42910724 + MIR3 SINE MIR 161 175 -33 317 321 24 57 chr12 100876561 100876770 -42909685 + L2 LINE L2 2909 3110 -162 1646 40 0 10 chr12 100877038 100877236 -42909219 - AluYb8 SINE Alu -122 196 1 3116 191 87 80 chr12 100877253 100878192 -42908263 - L1MC4 LINE L1 -638 7404 6459 2198 87 49 3 chr12 100878694 100878980 -42907475 - AluSg SINE Alu -9 301 3 310 97 0 32 chr12 100879416 100879478 -42906977 + (TTCCC)n Simple_repeat Simple_repeat 2 61 0 431 139 0 13 chr12 100879517 100879596 -42906859 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 1698 168 24 10 chr12 100879598 100879890 -42906565 - AluJb SINE Alu -12 300 5 247 173 37 25 chr12 100879950 100880031 -42906424 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 1827 103 0 8 chr12 100880096 100880378 -42906077 + AluSc SINE Alu 45 309 0 2288 190 33 0 chr12 100880531 100880926 -42905529 + MSTB1 LTR MaLR 25 432 0 2389 91 0 3 chr12 100881583 100881890 -42904565 + AluSq SINE Alu 1 306 -7 2402 99 0 0 chr12 100881890 100882193 -42904262 + AluSg SINE Alu 1 304 -6 241 291 106 14 chr12 100882230 100882411 -42904044 - MIR SINE MIR -6 256 11 2288 117 0 3 chr12 100883440 100883747 -42902708 + AluSq SINE Alu 1 306 -7 614 216 64 0 chr12 100883875 100884000 -42902455 - FLAM_A SINE Alu 0 133 1 357 170 100 50 chr12 100884052 100884152 -42902303 - MER104 DNA Tc2 -70 110 6 243 0 0 0 chr12 100884616 100884643 -42901812 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1911 152 3 7 chr12 100885408 100885705 -42900750 - AluJb SINE Alu -9 303 8 906 290 165 18 chr12 100885834 100886122 -42900333 - L2 LINE L2 -5 3308 2943 534 118 53 0 chr12 100886122 100886198 -42900257 - MADE1 DNA Mariner 0 80 1 906 290 165 18 chr12 100886198 100886309 -42900146 - L2 LINE L2 -370 2943 2850 572 143 89 0 chr12 100886309 100886421 -42900034 + Ricksha DNA DNA 5 126 -3120 345 203 0 0 chr12 100886420 100886479 -42899976 + ERVL LTR ERVL 5643 5701 -63 * 608 124 16 91 chr12 100886475 100886596 -42899859 + Ricksha DNA DNA 1692 1803 -1443 * 2137 153 10 35 chr12 100886591 100886990 -42899465 + Ricksha DNA DNA 2840 3228 -18 2812 249 136 27 chr12 100886990 100888031 -42898424 - L2 LINE L2 -448 2866 1712 377 176 24 0 chr12 100888157 100888242 -42898213 - L2 LINE L2 -1612 1702 1616 1990 220 62 25 chr12 100888280 100888798 -42897657 - L1ME1 LINE L1 -4 6162 5626 730 189 8 15 chr12 100888799 100888931 -42897524 + LTR40a LTR ERVL 387 517 -2 5152 218 32 24 chr12 100888933 100890249 -42896206 - L1ME1 LINE L1 -1473 4673 3347 1105 248 36 65 chr12 100890424 100890795 -42895660 - MER77 LTR ERV1 -6 599 256 201 180 146 90 chr12 100891252 100891341 -42895114 - MIR SINE MIR -6 256 163 465 289 55 15 chr12 100891375 100891576 -42894879 - LTR40b LTR ERVL -50 412 204 782 191 0 16 chr12 100891788 100891914 -42894541 + FLAM_A SINE Alu 2 125 -8 358 189 264 19 chr12 100891920 100892026 -42894429 - MIR SINE MIR -96 166 35 2095 184 121 98 chr12 100892049 100892679 -42893776 + LTR48B LTR ERV1 1 644 0 450 260 71 56 chr12 100893134 100893330 -42893125 + MIR SINE MIR 57 255 -7 720 250 184 17 chr12 100893643 100893941 -42892514 + L1ME4a LINE L1 5573 5820 -301 1761 169 0 43 chr12 100893941 100894266 -42892189 + AluSx SINE Alu 1 311 -1 720 250 184 17 chr12 100894266 100894435 -42892020 + L1ME4a LINE L1 5820 6118 -3 1872 154 0 13 chr12 100894494 100894793 -42891662 + AluJo SINE Alu 1 295 -17 769 114 12 3 chr12 100894990 100895160 -42891295 + MER51A LTR ERV1 1 224 -410 * 1291 119 52 24 chr12 100895156 100895366 -42891089 + MER51A LTR ERV1 419 634 0 456 287 126 58 chr12 100897217 100897729 -42888726 - L2 LINE L2 -166 3147 2610 1658 168 33 4 chr12 100898327 100898601 -42887854 - AluJo SINE Alu -30 282 1 180 0 0 0 chr12 100898604 100898624 -42887831 + (T)n Simple_repeat Simple_repeat 1 20 0 3611 193 60 21 chr12 100899622 100900136 -42886319 - L1MD1 LINE L1 -110 6132 5639 2228 125 3 3 chr12 100900136 100900448 -42886007 - AluSx SINE Alu 0 312 1 3611 193 60 21 chr12 100900448 100901265 -42885190 - L1MD1 LINE L1 -603 5639 4749 2604 223 53 30 chr12 100902224 100902393 -42884062 - L1MD1 LINE L1 -1390 4756 4592 1584 187 107 46 chr12 100902393 100902831 -42883624 + MLT1C LTR MaLR 3 467 0 2604 223 53 30 chr12 100902831 100903494 -42882961 - L1MD1 LINE L1 -1554 4592 3905 216 234 149 152 chr12 100903560 100903889 -42882566 - L2 LINE L2 0 3272 2945 1167 311 59 47 chr12 100904030 100904687 -42881768 - L2 LINE L2 -557 2757 2093 220 343 79 40 chr12 100904764 100905184 -42881271 + L2 LINE L2 2227 2662 -652 185 83 28 0 chr12 100906084 100906120 -42880335 + (TA)n Simple_repeat Simple_repeat 2 38 0 2286 153 63 9 chr12 100906357 100906675 -42879780 - L1MB2 LINE L1 -7 6164 5812 2231 106 10 0 chr12 100906675 100906977 -42879478 - AluSq SINE Alu -8 305 1 2286 153 63 9 chr12 100906977 100907115 -42879340 - L1MB2 LINE L1 -359 5812 5683 231 293 85 12 chr12 100907383 100907465 -42878990 - L3 LINE CR1 -506 1071 984 229 214 56 22 chr12 100908559 100908648 -42877807 - MLT1J LTR MaLR -24 487 396 319 299 90 53 chr12 100908693 100908994 -42877461 - MLT1J LTR MaLR -197 314 3 1666 183 7 13 chr12 100909423 100909729 -42876726 - AluJb SINE Alu -8 304 1 1544 123 5 0 chr12 100910467 100910671 -42875784 + AluSx SINE Alu 1 205 -107 259 253 40 140 chr12 100910955 100911105 -42875350 - MIR3 SINE MIR -13 195 61 1953 96 0 4 chr12 100911688 100912092 -42874363 + AluSq SINE Alu 38 440 0 2276 106 0 10 chr12 100913014 100913316 -42873139 - AluSx SINE Alu -13 299 1 504 306 158 22 chr12 100913367 100913589 -42872866 - MIR SINE MIR -3 259 8 2449 99 65 0 chr12 100913654 100914008 -42872447 + MER51B LTR ERV1 1 377 0 2214 114 3 13 chr12 100914084 100914391 -42872064 - AluSq SINE Alu -9 304 1 334 299 131 46 chr12 100914410 100914869 -42871586 - L1ME4a LINE L1 -275 5829 5332 1390 222 99 2 chr12 100914912 100915327 -42871128 - L1ME4a LINE L1 -3099 3030 2576 779 267 62 23 chr12 100916563 100917046 -42869409 - L1M4 LINE L1 -1537 4609 4108 302 226 89 24 chr12 100917062 100917186 -42869269 - L1ME4a LINE L1 -5975 144 13 24 0 0 0 chr12 100917399 100917423 -42869032 + AT_rich Low_complexity Low_complexity 1 24 0 339 298 105 9 chr12 100917510 100917624 -42868831 - MER91C DNA MER1_type -15 125 1 219 288 25 0 chr12 100917999 100918079 -42868376 + (ATG)n Simple_repeat Simple_repeat 2 83 0 456 19 0 0 chr12 100918464 100918517 -42867938 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 206 196 0 39 chr12 100918950 100919001 -42867454 + L2 LINE L2 3264 3312 -1 1590 171 80 30 chr12 100919525 100919864 -42866591 + MLT1A1 LTR MaLR 1 356 -9 2235 111 20 0 chr12 100920046 100920343 -42866112 - AluSg SINE Alu -7 303 1 493 277 46 0 chr12 100920514 100920644 -42865811 + MIR SINE MIR 127 262 0 792 247 55 43 chr12 100920920 100921092 -42865363 + MIR SINE MIR 2 179 -83 1831 129 144 21 chr12 100921092 100921473 -42864982 - MSTA LTR MaLR 0 428 1 792 247 55 43 chr12 100921473 100921555 -42864900 + MIR SINE MIR 179 259 -3 180 147 15 44 chr12 100921778 100921846 -42864609 + (TATTG)n Simple_repeat Simple_repeat 4 69 0 23 54 0 0 chr12 100922092 100922129 -42864326 + AT_rich Low_complexity Low_complexity 1 37 0 1962 129 69 9 chr12 100922408 100922726 -42863729 - MER1B DNA MER1_type 0 337 1 1467 70 0 15 chr12 100923095 100923295 -42863160 - L1PA8 LINE L1 -8 6164 5968 24 32 0 0 chr12 100923431 100923462 -42862993 + AT_rich Low_complexity Low_complexity 1 31 0 1012 71 0 93 chr12 100923820 100924003 -42862452 + MER30 DNA MER1_type 1 166 -64 1435 181 32 8 chr12 100924414 100924662 -42861793 + AluJo SINE Alu 1 254 -58 1090 111 14 0 chr12 100925104 100925248 -42861207 + AluSc SINE Alu 1 146 -163 2231 133 0 0 chr12 100926167 100926475 -42859980 - AluSx SINE Alu -4 308 1 369 243 230 7 chr12 100926585 100926733 -42859722 + MER5A DNA MER1_type 9 189 0 183 80 0 0 chr12 100926776 100926801 -42859654 + (T)n Simple_repeat Simple_repeat 1 25 0 821 148 0 8 chr12 100926834 100926956 -42859499 + FLAM_A SINE Alu 3 123 -10 212 384 40 24 chr12 100928534 100928659 -42857796 + MIR3 SINE MIR 58 184 -24 1708 170 7 0 chr12 100928833 100929109 -42857346 + AluJo SINE Alu 35 312 0 885 210 17 0 chr12 100929148 100929329 -42857126 - MER5A DNA MER1_type -3 186 3 2160 128 0 0 chr12 100929888 100930185 -42856270 - AluSx SINE Alu -15 297 1 380 208 87 29 chr12 100930199 100930372 -42856083 - L1M4 LINE L1 -1082 5064 4882 1440 189 53 11 chr12 100930416 100930701 -42855754 + AluJo SINE Alu 1 297 -15 393 236 8 81 chr12 100930967 100931090 -42855365 + MER81 DNA DNA 1 114 0 286 314 211 5 chr12 100931182 100931367 -42855088 - MIR SINE MIR -6 256 34 1877 130 9 48 chr12 100931500 100931815 -42854640 - AluJb SINE Alu -9 303 1 256 278 41 0 chr12 100932263 100932360 -42854095 + MER103 DNA DNA 48 148 -18 423 244 42 17 chr12 100932893 100933012 -42853443 + MER5B DNA MER1_type 1 122 -56 6094 43 36 1 chr12 100933013 100933809 -42852646 - L1PA6 LINE L1 -2 6152 5329 261 209 45 45 chr12 100933809 100933876 -42852579 - MER5B DNA MER1_type -111 67 1 566 291 18 24 chr12 100934796 100934961 -42851494 - MIR SINE MIR -97 165 2 514 309 99 5 chr12 100935373 100935574 -42850881 + MIR SINE MIR 21 240 -22 191 259 17 52 chr12 100935658 100935716 -42850739 - L2 LINE L2 -78 3235 3180 1959 168 3 0 chr12 100936006 100936315 -42850140 + AluJo SINE Alu 2 311 -1 324 240 90 0 chr12 100936846 100936946 -42849509 - L1ME4a LINE L1 -39 6082 5974 254 233 71 49 chr12 100937195 100937320 -42849135 - MIR SINE MIR -92 116 19 251 347 0 0 chr12 100937369 100937441 -42849014 - L2 LINE L2 -6 3266 3195 2236 111 0 0 chr12 100937441 100937730 -42848725 + AluSg SINE Alu 1 289 -21 2248 80 4 0 chr12 100937816 100938125 -42848330 + AluSg1 SINE Alu 4 313 0 345 318 97 71 chr12 100938125 100938392 -42848063 - L2 LINE L2 -68 3204 2931 432 258 302 0 chr12 100939202 100939361 -42847094 + MIR SINE MIR 55 261 -1 27 73 0 0 chr12 100939443 100939498 -42846957 + AT_rich Low_complexity Low_complexity 1 55 0 2183 95 11 0 chr12 100940002 100940286 -42846169 + AluSx SINE Alu 1 287 -25 642 79 0 0 chr12 100940287 100940376 -42846079 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 301 311 39 0 chr12 100940376 100940479 -42845976 - MIR3 SINE MIR -10 198 92 1042 122 5 108 chr12 100941390 100941612 -42844843 + MER20 DNA MER1_type 1 199 -20 713 108 31 8 chr12 100941613 100941743 -42844712 + L1MB3 LINE L1 6050 6182 -1 246 238 32 0 chr12 100942010 100942073 -42844382 + MLT1K LTR MaLR 517 581 -7 3155 70 63 2 chr12 100942228 100942655 -42843800 - MLT2A2 LTR ERVL 0 453 1 741 222 41 6 chr12 100943407 100943578 -42842877 - MER5B DNA MER1_type 0 178 2 661 277 40 7 chr12 100943616 100943916 -42842539 + L1ME LINE L1 5255 5564 -606 2063 139 0 0 chr12 100943929 100944216 -42842239 - AluSx SINE Alu -20 292 6 2081 144 57 85 chr12 100944223 100944696 -42841759 + MLT2C2 LTR ERVL 5 464 0 403 240 19 0 chr12 100945242 100945346 -42841109 - L1MD3 LINE L1 -488 7507 7402 31 26 0 0 chr12 100945360 100945398 -42841057 + AT_rich Low_complexity Low_complexity 1 38 0 186 297 126 18 chr12 100945621 100945732 -42840723 + L2 LINE L2 3171 3293 -20 233 303 67 22 chr12 100946412 100946501 -42839954 - L3 LINE CR1 -466 1111 1019 215 299 143 0 chr12 100946506 100946653 -42839802 - L2 LINE L2 0 3313 3146 309 306 0 0 chr12 100946653 100946738 -42839717 - L1MC4 LINE L1 -1341 6701 6617 530 288 184 66 chr12 100946749 100947114 -42839341 - L3 LINE CR1 -156 1421 1014 363 277 45 39 chr12 100947114 100947269 -42839186 - L2 LINE L2 0 3313 3158 2113 107 7 10 chr12 100947270 100947559 -42838896 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr12 100947559 100947581 -42838874 + AT_rich Low_complexity Low_complexity 1 22 0 3263 158 43 61 chr12 100947903 100948529 -42837926 - L1MB3 LINE L1 -1 6179 5610 1662 146 22 19 chr12 100948529 100948796 -42837659 + AluJb SINE Alu 1 268 -44 3263 158 43 61 chr12 100948796 100949112 -42837343 - L1MB3 LINE L1 -570 5610 5290 727 107 33 8 chr12 100949378 100949500 -42836955 + L1MB7 LINE L1 6043 6167 -17 1120 258 204 2 chr12 100949626 100950063 -42836392 - L2 LINE L2 0 3313 2782 1554 193 33 27 chr12 100950721 100951021 -42835434 + AluJo SINE Alu 3 304 -8 33 90 0 0 chr12 100951951 100952040 -42834415 + AT_rich Low_complexity Low_complexity 1 89 0 264 218 238 30 chr12 100954013 100954114 -42832341 - MER20B DNA MER1_type -604 179 58 23 0 0 0 chr12 100954426 100954449 -42832006 + AT_rich Low_complexity Low_complexity 1 23 0 287 351 53 18 chr12 100954922 100955036 -42831419 + MIR3 SINE MIR 38 155 -53 1967 118 0 0 chr12 100955918 100956181 -42830274 - AluSg SINE Alu -10 300 38 304 210 37 25 chr12 100956248 100956329 -42830126 - L1ME3A LINE L1 0 6170 6089 595 257 109 10 chr12 100956946 100957148 -42829307 - MIR SINE MIR -8 254 33 1345 177 154 3 chr12 100957285 100957584 -42828871 - MER2 DNA MER2_type 0 344 1 202 149 170 0 chr12 100957738 100957785 -42828670 + MIR SINE MIR 143 197 -65 1869 119 0 0 chr12 100958666 100958927 -42827528 - AluSx SINE Alu -7 305 45 302 255 112 10 chr12 100959333 100959431 -42827024 + L2 LINE L2 3204 3311 -2 201 271 0 0 chr12 100960946 100960994 -42825461 + L3 LINE CR1 1528 1575 -2 972 224 90 24 chr12 100961141 100961476 -42824979 + L1ME3A LINE L1 5810 6166 -4 229 33 0 0 chr12 100961616 100961646 -42824809 + L1MA9 LINE L1 6282 6311 -1 2273 162 21 2 chr12 100962104 100962536 -42823919 + L1MB2 LINE L1 5705 6144 -27 641 112 60 22 chr12 100962541 100962675 -42823780 + L1MB4 LINE L1 6042 6180 0 5148 62 17 1 chr12 100962937 100963587 -42822868 + PABL_A LTR ERV1 1 660 0 257 315 154 8 chr12 100963690 100963820 -42822635 - L2 LINE L2 -2 3270 3122 266 264 22 33 chr12 100964737 100964828 -42821627 - MER5B DNA MER1_type 0 178 89 424 299 50 41 chr12 100966681 100966902 -42819553 - MIR SINE MIR 0 262 34 22 35 0 0 chr12 100967000 100967029 -42819426 + AT_rich Low_complexity Low_complexity 1 29 0 189 372 85 23 chr12 100967409 100967538 -42818917 + L2 LINE L2 3093 3229 -43 181 271 62 0 chr12 100968438 100968486 -42817969 + MIR SINE MIR 117 167 -95 246 287 9 70 chr12 100969263 100969378 -42817077 + MER5A DNA MER1_type 80 187 -2 423 0 0 0 chr12 100969671 100969718 -42816737 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1846 136 7 48 chr12 100969749 100970058 -42816397 - AluJb SINE Alu -16 296 1 2171 117 0 0 chr12 100970195 100970494 -42815961 + AluSx SINE Alu 1 299 -13 197 347 0 53 chr12 100971155 100971250 -42815205 - MIR3 SINE MIR -10 198 109 333 0 0 0 chr12 100971402 100971439 -42815016 + (TG)n Simple_repeat Simple_repeat 2 38 0 374 333 133 0 chr12 100971726 100971876 -42814579 - L2 LINE L2 -1 3271 3102 319 276 132 15 chr12 100972266 100972531 -42813924 - L1ME4a LINE L1 -20 6101 5806 741 232 38 39 chr12 100973237 100973663 -42812792 - MLT1J LTR MaLR -23 488 1 6480 129 23 2 chr12 100973706 100975297 -42811158 - L1MA3 LINE L1 -29 6276 4647 21 0 0 0 chr12 100975656 100975677 -42810778 + AT_rich Low_complexity Low_complexity 1 21 0 408 291 58 23 chr12 100975715 100975887 -42810568 - MIR SINE MIR -51 211 34 41 21 0 0 chr12 100976238 100976286 -42810169 + AT_rich Low_complexity Low_complexity 1 48 0 1973 156 10 0 chr12 100976318 100976619 -42809836 - AluSx SINE Alu -8 304 1 1317 146 92 85 chr12 100977026 100977354 -42809101 + AluJb SINE Alu 1 330 0 209 254 270 0 chr12 100978329 100978392 -42808063 - MIR3 SINE MIR -3 205 126 374 296 44 25 chr12 100978392 100978551 -42807904 - MIR3 SINE MIR -41 167 6 2248 95 0 3 chr12 100978835 100979155 -42807300 - AluSg SINE Alu 0 319 1 22 35 0 0 chr12 100980438 100980467 -42805988 + AT_rich Low_complexity Low_complexity 1 29 0 2272 101 0 0 chr12 100980518 100980806 -42805649 + AluSx SINE Alu 1 288 -24 1063 130 50 0 chr12 100980814 100981014 -42805441 - L1MA8 LINE L1 -1 6290 6081 27 29 0 0 chr12 100981024 100981058 -42805397 + AT_rich Low_complexity Low_complexity 1 34 0 486 269 66 39 chr12 100981325 100981507 -42804948 + MIR SINE MIR 1 187 -75 2468 93 3 0 chr12 100981521 100981833 -42804622 + AluSp SINE Alu 1 313 0 1035 147 6 0 chr12 100982163 100982319 -42804136 - FRAM SINE Alu -20 156 1 1407 87 6 0 chr12 100982536 100982719 -42803736 - AluSg/x SINE Alu -6 304 121 973 275 98 21 chr12 100982823 100983911 -42802544 - L1ME LINE L1 -518 5644 4459 225 94 0 0 chr12 100984112 100984144 -42802311 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1112 270 116 37 chr12 100984164 100984909 -42801546 + L2 LINE L2 2484 3300 -13 273 98 0 0 chr12 100984909 100984950 -42801505 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2794 154 56 2 chr12 100985013 100985492 -42800963 + MLT1D LTR MaLR 1 505 0 1662 179 27 53 chr12 100985839 100986253 -42800202 + MLT1C LTR MaLR 53 455 -12 1108 231 119 42 chr12 100986344 100986772 -42799683 + MLT1C LTR MaLR 7 467 0 40872 32 23 1 chr12 100986933 100992953 -42793502 + L1PA3 LINE L1 1 6151 -4 2111 159 132 28 chr12 100993168 100993639 -42792816 - MLT2B1 LTR ERVL 0 520 1 1637 207 59 43 chr12 100993784 100994276 -42792179 + LTR53 LTR ERVL 8 507 -12 415 290 28 9 chr12 100994474 100994581 -42791874 + MER5B DNA MER1_type 1 109 -69 1711 133 62 91 chr12 100994785 100995169 -42791286 + THE1C LTR MaLR 3 375 0 2313 103 6 0 chr12 100995332 100995643 -42790812 - AluSp SINE Alu 0 313 1 2812 180 13 18 chr12 100995698 100996035 -42790420 - L1MB8 LINE L1 -94 6084 5750 2682 102 6 6 chr12 100996035 100996399 -42790056 - THE1B LTR MaLR 0 364 1 2812 180 13 18 chr12 100996399 100996667 -42789788 - L1MB8 LINE L1 -428 5750 5482 2940 103 14 18 chr12 100996958 100997394 -42789061 + MER57B LTR ERV1 1 434 0 385 240 156 7 chr12 100997870 100998024 -42788431 + MER104 DNA Tc2 1 177 -3 1990 134 20 0 chr12 100998602 100998900 -42787555 - AluSx SINE Alu -8 304 1 354 107 0 0 chr12 101000059 101000115 -42786340 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 665 244 66 78 chr12 101001559 101002107 -42784348 + L1MC5 LINE L1 7357 7897 -64 1860 156 3 3 chr12 101002138 101002445 -42784010 - AluSx SINE Alu 0 307 1 286 330 30 3 chr12 101002865 101003100 -42783355 - MLT1I LTR MaLR -16 422 124 404 246 35 35 chr12 101003221 101003335 -42783120 - MIR SINE MIR -114 148 35 1905 147 3 29 chr12 101003395 101003709 -42782746 - AluJb SINE Alu -6 306 1 1222 118 0 5 chr12 101003722 101003917 -42782538 - L1MA5 LINE L1 -3 6297 6104 475 273 42 36 chr12 101053920 101054085 -42732370 + MIR SINE MIR 64 229 -33 191 161 0 0 chr12 101054062 101054093 -42732362 - MIR SINE MIR -21 241 211 * 1983 130 27 3 chr12 101055571 101055863 -42730592 - AluSx SINE Alu -13 299 1 2204 119 0 0 chr12 101057209 101057511 -42728944 + AluSx SINE Alu 1 302 -10 311 213 55 87 chr12 101057787 101057914 -42728541 + MIR SINE MIR 23 145 -117 575 184 113 0 chr12 101058705 101058851 -42727604 + MIR SINE MIR 73 233 -29 2034 121 18 0 chr12 101059416 101059697 -42726758 + AluSx SINE Alu 1 286 -26 207 0 0 0 chr12 101059728 101059751 -42726704 + (A)n Simple_repeat Simple_repeat 1 23 0 945 134 0 8 chr12 101060302 101060436 -42726019 - FLAM_C SINE Alu 0 133 1 1852 134 3 61 chr12 101061816 101062129 -42724326 - AluJb SINE Alu -16 296 2 1251 163 41 29 chr12 101063282 101063528 -42722927 - AluJo SINE Alu -6 306 58 302 331 93 0 chr12 101063676 101063815 -42722640 - L2 LINE L2 -508 2806 2655 289 286 39 0 chr12 101064346 101064423 -42722032 + MIR SINE MIR 112 191 -71 278 330 9 17 chr12 101064826 101064931 -42721524 + GA-rich Low_complexity Low_complexity 4 109 -8 2030 147 0 0 chr12 101064931 101065231 -42721224 + AluJb SINE Alu 1 300 -12 201 39 0 0 chr12 101065350 101065376 -42721079 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 195 298 50 66 chr12 101066335 101066456 -42719999 - MER5A DNA MER1_type -13 176 58 1919 135 24 3 chr12 101068505 101068793 -42717662 - AluSx SINE Alu -18 294 1 385 250 74 40 chr12 101069467 101069615 -42716840 + MIR SINE MIR 35 187 -75 191 175 0 25 chr12 101070148 101070188 -42716267 - L2 LINE L2 0 3313 3275 899 246 0 44 chr12 101070806 101071034 -42715421 + MIR SINE MIR 45 262 0 576 202 19 19 chr12 101071877 101071981 -42714474 + FRAM SINE Alu 54 157 -19 437 311 57 0 chr12 101072233 101072355 -42714100 - L2 LINE L2 -1 3271 3143 750 275 123 8 chr12 101072378 101072614 -42713841 + MLT1G LTR MaLR 226 488 -102 356 357 16 8 chr12 101072615 101072741 -42713714 + L2 LINE L2 2960 3086 -186 1579 127 22 0 chr12 101073245 101073494 -42712961 + AluJo SINE Alu 48 301 0 2112 107 20 7 chr12 101074405 101074703 -42711752 - AluSx SINE Alu -8 304 3 182 209 22 44 chr12 101075246 101075337 -42711118 + GA-rich Low_complexity Low_complexity 2 90 0 21 0 0 0 chr12 101075676 101075697 -42710758 + AT_rich Low_complexity Low_complexity 1 21 0 2278 92 0 32 chr12 101075945 101076260 -42710195 - AluSg SINE Alu -5 305 1 340 102 0 0 chr12 101076426 101076475 -42709980 + MADE1 DNA Mariner 32 80 0 2269 97 7 0 chr12 101079861 101080151 -42706304 - AluSq SINE Alu -21 292 1 22 35 0 0 chr12 101080880 101080909 -42705546 + AT_rich Low_complexity Low_complexity 1 29 0 1870 93 93 24 chr12 101082027 101082318 -42704137 + L1PA16 LINE L1 5854 6164 -2 1670 164 17 24 chr12 101082738 101083025 -42703430 + AluJb SINE Alu 1 285 -27 258 256 67 44 chr12 101083555 101083645 -42702810 - L2 LINE L2 -24 3289 3198 199 274 81 32 chr12 101083660 101083722 -42702733 - L2 LINE L2 0 3272 3208 589 313 159 18 chr12 101084383 101084996 -42701459 - L2 LINE L2 -71 3242 2535 1842 172 3 0 chr12 101086533 101086835 -42699620 + AluJb SINE Alu 1 303 -9 488 245 123 13 chr12 101086855 101087010 -42699445 + MIR SINE MIR 41 212 -50 596 148 74 0 chr12 101087502 101087610 -42698845 - L1MA7 LINE L1 -3 6288 6173 428 272 44 68 chr12 101088347 101088641 -42697814 + L1ME4a LINE L1 5739 6025 -96 23 0 0 0 chr12 101089801 101089824 -42696631 + AT_rich Low_complexity Low_complexity 1 23 0 2098 104 52 0 chr12 101090135 101090424 -42696031 + AluSx SINE Alu 1 304 -8 1835 145 35 7 chr12 101090432 101090721 -42695734 + AluJb SINE Alu 1 297 -15 2199 105 7 3 chr12 101090722 101091017 -42695438 + AluSx SINE Alu 1 296 -16 2145 127 3 0 chr12 101092372 101092671 -42693784 + AluSg SINE Alu 1 300 -10 2492 64 0 29 chr12 101093689 101094002 -42692453 - AluY SINE Alu -6 305 2 1918 138 7 16 chr12 101094003 101094308 -42692147 - AluJo SINE Alu -10 302 1 1929 143 3 28 chr12 101094394 101094715 -42691740 + L1MB2 LINE L1 5815 6127 -44 318 256 88 24 chr12 101094814 101094939 -42691516 - MIR SINE MIR -46 216 84 360 94 0 0 chr12 101095770 101095823 -42690632 + (CA)n Simple_repeat Simple_repeat 2 54 0 231 276 35 11 chr12 101096499 101096586 -42689869 - L1MC4 LINE L1 -1345 6697 6609 483 249 143 26 chr12 101096708 101096897 -42689558 + MIR SINE MIR 18 228 -34 783 152 0 0 chr12 101097487 101097599 -42688856 - FLAM_A SINE Alu -11 131 20 2378 79 0 19 chr12 101098020 101098335 -42688120 - AluY SINE Alu -2 309 1 2446 81 3 0 chr12 101098773 101099071 -42687384 - AluSp SINE Alu -14 299 1 331 289 33 16 chr12 101099259 101099380 -42687075 - MER103 DNA DNA -1 165 43 1978 146 14 0 chr12 101099652 101099947 -42686508 + AluJo SINE Alu 1 299 -13 235 275 110 11 chr12 101100785 101100876 -42685579 + MIR SINE MIR 157 256 -6 235 266 52 65 chr12 101101073 101101227 -42685228 + HAL1b LINE L1 1189 1340 -8 222 300 12 50 chr12 101101240 101101320 -42685135 - L2 LINE L2 -5 3267 3191 1081 164 224 0 chr12 101102033 101102296 -42684159 + MER5C DNA MER1_type 3 324 0 544 229 72 7 chr12 101102304 101102454 -42684001 + MIR SINE MIR 20 170 -62 280 280 159 0 chr12 101102620 101102727 -42683728 + MIR SINE MIR 90 213 -49 24 32 0 0 chr12 101103068 101103099 -42683356 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 101103290 101103311 -42683144 + AT_rich Low_complexity Low_complexity 1 21 0 183 323 105 48 chr12 101104328 101104662 -42681793 + L2 LINE L2 2090 2442 -872 22 0 0 0 chr12 101105885 101105907 -42680548 + AT_rich Low_complexity Low_complexity 1 22 0 306 259 93 65 chr12 101106536 101106675 -42679780 - L2 LINE L2 -2 3270 3128 1557 73 14 27 chr12 101107000 101107220 -42679235 + L1PA13 LINE L1 5936 6152 -11 26 0 0 0 chr12 101107318 101107344 -42679111 + AT_rich Low_complexity Low_complexity 1 26 0 2167 43 4 0 chr12 101107662 101107920 -42678535 - L1PA7 LINE L1 0 6154 5896 645 13 0 0 chr12 101110124 101110199 -42676256 + tRNA-Asp-GAC tRNA tRNA 1 75 0 394 304 167 50 chr12 101110522 101110851 -42675604 - L2 LINE L2 -536 2778 2489 1914 162 138 0 chr12 101110851 101111227 -42675228 - MSTA LTR MaLR 0 428 1 394 304 167 50 chr12 101111227 101111536 -42674919 - L2 LINE L2 -825 2489 2065 2303 57 30 20 chr12 101111796 101112093 -42674362 - AluY SINE Alu -11 300 1 1729 144 12 0 chr12 101112519 101112776 -42673679 - AluJb SINE Alu -46 266 7 749 176 0 0 chr12 101113207 101113326 -42673129 + AluJb SINE Alu 2 120 -192 186 43 0 0 chr12 101113326 101113349 -42673106 + (TAA)n Simple_repeat Simple_repeat 2 24 0 294 326 189 11 chr12 101113466 101113641 -42672814 + MIR SINE MIR 56 261 -1 1439 253 68 50 chr12 101114431 101114930 -42671525 + MLT1J LTR MaLR 3 510 -1 337 118 29 0 chr12 101115601 101115669 -42670786 + L1MA6 LINE L1 6231 6300 0 2433 66 0 0 chr12 101115758 101116044 -42670411 - AluY SINE Alu -25 286 1 1641 175 7 7 chr12 101116075 101116267 -42670188 - AluJb SINE Alu 0 312 118 198 0 0 0 chr12 101116267 101116289 -42670166 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 1641 175 7 7 chr12 101116289 101116388 -42670067 - AluJb SINE Alu -193 119 21 3824 55 172 45 chr12 101116388 101116965 -42669490 + PABL_A LTR ERV1 11 660 0 260 241 69 0 chr12 101116965 101116998 -42669457 - AluJ/FLAM SINE Alu -264 38 2 1246 45 13 6 chr12 101117581 101117738 -42668717 + AluY SINE Alu 153 310 -1 1318 216 20 101 chr12 101117819 101118116 -42668339 - L2 LINE L2 -695 2619 2368 811 139 0 8 chr12 101118116 101118245 -42668210 - FLAM_C SINE Alu -1 132 5 1318 216 20 101 chr12 101118245 101118392 -42668063 - L2 LINE L2 -946 2368 2211 278 271 21 0 chr12 101118392 101118488 -42667967 - L2 LINE L2 -1207 2107 2010 2224 125 0 0 chr12 101119334 101119638 -42666817 + AluSc SINE Alu 1 304 -5 295 206 28 103 chr12 101119944 101120012 -42666443 + MER5A DNA MER1_type 8 67 -122 1508 113 38 151 chr12 101120012 101120356 -42666099 + AluYb8 SINE Alu 1 305 -3 295 206 28 103 chr12 101120356 101120394 -42666061 + MER5A DNA MER1_type 67 106 -83 1869 233 18 39 chr12 101120923 101121430 -42665025 - L1ME3A LINE L1 -8 6162 5667 212 31 62 0 chr12 101122476 101122508 -42663947 + (TATG)n Simple_repeat Simple_repeat 3 36 0 3040 209 40 5 chr12 101122526 101123157 -42663298 - MER82 DNA MER2_type 0 653 1 231 258 0 15 chr12 101123331 101123397 -42663058 + GA-rich Low_complexity Low_complexity 3 67 0 405 230 101 78 chr12 101124048 101124305 -42662150 - Charlie7 DNA MER1_type -1894 718 456 225 163 70 0 chr12 101124337 101124380 -42662075 + MLT1A2-int LTR MaLR 1 46 -1689 2503 136 30 28 chr12 101124380 101124814 -42661641 + L1PA16 LINE L1 5718 6152 -14 3172 204 191 122 chr12 101124960 101125519 -42660936 + MLT1A2-int LTR MaLR 33 552 -1183 882 147 0 22 chr12 101125519 101125655 -42660800 + AluJb SINE Alu 1 133 -179 3172 204 191 122 chr12 101125655 101126553 -42659902 + MLT1A2-int LTR MaLR 552 1735 0 1845 208 22 19 chr12 101126556 101126926 -42659529 + MLT1A2 LTR MaLR 4 374 0 2062 132 99 6 chr12 101127369 101127703 -42658752 + MLT1A1 LTR MaLR 1 365 0 525 273 21 7 chr12 101127894 101128037 -42658418 - MLT1F LTR MaLR -396 146 2 346 298 50 7 chr12 101128045 101128186 -42658269 - MIR SINE MIR -112 150 4 690 228 109 24 chr12 101128900 101129111 -42657344 - MIR SINE MIR -18 244 16 2384 113 22 86 chr12 101129143 101129178 -42657277 - MSTA LTR MaLR -4 424 388 2370 93 3 0 chr12 101129178 101129479 -42656976 + AluSg1 SINE Alu 2 303 -6 2461 86 7 0 chr12 101129479 101129782 -42656673 + AluSg SINE Alu 1 306 -4 2384 113 22 86 chr12 101129782 101129817 -42656638 - MSTA LTR MaLR -39 389 353 2361 86 0 13 chr12 101129817 101130130 -42656325 + AluY SINE Alu 1 309 -2 2384 113 22 86 chr12 101130130 101130509 -42655946 - MSTA LTR MaLR -75 353 2 191 267 24 103 chr12 101130531 101130696 -42655759 + L2 LINE L2 2925 3076 -196 969 225 95 36 chr12 101130805 101131167 -42655288 + MER57A LTR ERV1 43 403 0 665 272 191 50 chr12 101131216 101131620 -42654835 + MLT1K LTR MaLR 126 586 -2 25 0 0 0 chr12 101132548 101132573 -42653882 + AT_rich Low_complexity Low_complexity 1 25 0 2302 116 0 0 chr12 101132693 101132994 -42653461 - AluSq SINE Alu -12 301 1 1461 158 28 112 chr12 101133003 101133326 -42653129 - AluJo SINE Alu -6 296 1 1424 226 71 113 chr12 101134618 101135396 -42651059 - LTR1B LTR ERV1 -81 745 1 561 286 51 0 chr12 101135533 101135711 -42650744 + MIR SINE MIR 32 218 -44 2306 93 3 0 chr12 101135711 101136002 -42650453 + AluSp SINE Alu 1 292 -21 209 316 35 0 chr12 101136042 101136099 -42650356 + L2 LINE L2 3199 3257 -15 180 77 0 0 chr12 101136102 101136128 -42650327 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 959 232 0 5 chr12 101136370 101136568 -42649887 - MLT1B LTR MaLR -2 388 192 2122 105 3 7 chr12 101136667 101136962 -42649493 - AluSg SINE Alu -11 299 6 868 185 60 5 chr12 101136988 101137174 -42649281 - MLT1B LTR MaLR -186 188 1 757 193 7 0 chr12 101137311 101137461 -42648994 + MER91B DNA MER1_type 17 167 -23 2326 90 3 19 chr12 101137795 101138106 -42648349 + AluSg SINE Alu 1 306 -4 274 271 246 0 chr12 101138167 101138285 -42648170 - MIR SINE MIR -6 256 110 891 269 49 32 chr12 101138287 101138633 -42647822 + MLT1J LTR MaLR 2 353 -158 2357 130 15 38 chr12 101138635 101139028 -42647427 + Tigger3(Golem) DNA MER2_type 2646 3029 0 2254 191 16 41 chr12 101139095 101139609 -42646846 + MLT1D LTR MaLR 3 503 -2 516 286 60 28 chr12 101139620 101139868 -42646587 - LTR33 LTR ERVL -10 511 256 1904 168 0 3 chr12 101139954 101140252 -42646203 + AluJb SINE Alu 1 297 -15 1988 110 43 17 chr12 101140615 101140915 -42645540 - AluSg1 SINE Alu -1 308 1 23 54 0 0 chr12 101141355 101141392 -42645063 + AT_rich Low_complexity Low_complexity 1 37 0 2360 94 0 0 chr12 101141651 101141948 -42644507 + AluSq SINE Alu 1 297 -16 186 103 0 0 chr12 101142224 101142253 -42644202 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1983 134 0 0 chr12 101142256 101142533 -42643922 - AluJo SINE Alu -30 282 6 788 166 0 43 chr12 101142625 101142764 -42643691 - FLAM_C SINE Alu 0 133 1 278 169 15 31 chr12 101142815 101142880 -42643575 + MLT1L LTR MaLR 11 74 -541 1711 186 3 3 chr12 101142888 101143184 -42643271 - AluJo SINE Alu -15 297 2 903 149 46 29 chr12 101143287 101143462 -42642993 + MER20 DNA MER1_type 42 219 0 320 237 52 31 chr12 101143462 101143557 -42642898 + MLT1L LTR MaLR 148 244 -371 623 274 231 30 chr12 101143569 101143967 -42642488 + MLT1J LTR MaLR 1 478 -33 330 26 0 0 chr12 101144028 101144067 -42642388 + (CA)n Simple_repeat Simple_repeat 1 39 0 566 315 26 39 chr12 101144087 101144319 -42642136 + MLT1L LTR MaLR 331 559 -56 270 95 0 0 chr12 101145490 101145532 -42640923 + (CA)n Simple_repeat Simple_repeat 1 42 0 36 19 0 19 chr12 101145674 101145692 -42640763 + AT_rich Low_complexity Low_complexity 1 18 -35 2226 116 0 0 chr12 101145692 101145995 -42640460 + AluSc SINE Alu 1 303 -6 36 19 0 19 chr12 101145995 101146030 -42640425 + AT_rich Low_complexity Low_complexity 18 53 0 2202 98 14 0 chr12 101146038 101146335 -42640120 - AluSg SINE Alu -9 301 1 217 178 0 0 chr12 101147036 101147081 -42639374 + MIR SINE MIR 188 232 -30 197 254 18 0 chr12 101147122 101147177 -42639278 + L2 LINE L2 3256 3311 -2 25 51 0 0 chr12 101148085 101148124 -42638331 + AT_rich Low_complexity Low_complexity 1 39 0 1016 114 0 74 chr12 101148135 101148265 -42638190 + L1MB5 LINE L1 6012 6127 -47 2154 96 31 14 chr12 101148265 101148556 -42637899 + AluSx SINE Alu 1 296 -16 1016 114 0 74 chr12 101148556 101148601 -42637854 + L1MB5 LINE L1 6127 6174 0 2279 98 16 10 chr12 101149101 101149408 -42637047 + AluSc SINE Alu 1 309 0 3809 123 49 6 chr12 101149516 101150150 -42636305 - L1MA8 LINE L1 -10 6281 5621 1210 218 34 88 chr12 101150156 101150238 -42636217 - MLT1A1 LTR MaLR 0 365 280 2347 80 0 49 chr12 101150238 101150565 -42635890 - AluY SINE Alu 0 311 1 1210 218 34 88 chr12 101150565 101150868 -42635587 - MLT1A1 LTR MaLR -85 280 1 588 138 0 0 chr12 101150868 101150962 -42635493 - L1MA8 LINE L1 -672 5619 5526 546 203 0 56 chr12 101150962 101151105 -42635350 - MER53 DNA DNA -50 139 5 1856 167 0 0 chr12 101151686 101151993 -42634462 - AluJo SINE Alu 0 307 1 340 267 22 98 chr12 101153446 101153532 -42632923 + L2 LINE L2 3008 3099 -214 2286 107 0 0 chr12 101153532 101153822 -42632633 - AluSg SINE Alu -20 290 1 1882 181 10 0 chr12 101153828 101154137 -42632318 - AluJb SINE Alu 0 312 1 340 267 22 98 chr12 101154137 101154268 -42632187 + L2 LINE L2 3104 3215 -98 1881 196 63 55 chr12 101154269 101154456 -42631999 + MLT1C LTR MaLR 1 185 -282 2241 81 0 0 chr12 101154456 101154739 -42631716 + AluSq SINE Alu 2 284 -29 255 31 0 0 chr12 101154742 101154774 -42631681 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1881 196 63 55 chr12 101154774 101155040 -42631415 + MLT1C LTR MaLR 186 462 -5 639 186 10 0 chr12 101155043 101155145 -42631310 + L2 LINE L2 3210 3312 -1 2161 92 0 0 chr12 101155225 101155543 -42630912 - AluSg SINE Alu 0 318 1 1654 197 143 18 chr12 101155559 101156056 -42630399 - LTR48B LTR ERV1 0 644 86 323 145 13 66 chr12 101156037 101156113 -42630342 - LTR29 LTR ERV1 -414 208 137 * 251 218 103 13 chr12 101156088 101156166 -42630289 - MER34 LTR ERV1 -409 133 49 * 843 180 13 20 chr12 101156169 101156304 -42630151 + AluJo SINE Alu 2 137 -175 2145 99 31 0 chr12 101156304 101156596 -42629859 + AluSq SINE Alu 1 301 -12 843 180 13 20 chr12 101156596 101156610 -42629845 + AluJo SINE Alu 137 150 -162 507 154 0 0 chr12 101156609 101156687 -42629768 + AluJ/FRAM SINE Alu 216 293 -19 * 4174 140 3 2 chr12 101157239 101157873 -42628582 + MER41B LTR ERV1 1 635 0 485 193 11 0 chr12 101158124 101158212 -42628243 - MER57A LTR ERV1 -1 402 314 569 255 10 88 chr12 101158297 101158489 -42627966 - LTR8 LTR ERV1 -435 256 80 1167 139 69 32 chr12 101158490 101158706 -42627749 - AluSx SINE Alu -88 224 1 432 258 136 7 chr12 101158891 101159046 -42627409 + MLT1L LTR MaLR 364 538 -77 1944 114 0 33 chr12 101159090 101159396 -42627059 - AluSq SINE Alu -17 296 1 1683 218 95 26 chr12 101159496 101159918 -42626537 - MLT2B2 LTR ERVL -64 451 1 1808 156 58 30 chr12 101160106 101160471 -42625984 + THE1C LTR MaLR 1 375 0 10078 103 6 96 chr12 101160474 101160839 -42625616 + THE1C-int LTR MaLR 4 400 -1180 726 76 0 0 chr12 101160839 101160931 -42625524 - AluSp/q SINE Alu -11 302 211 10078 103 6 96 chr12 101160931 101160981 -42625474 + THE1C-int LTR MaLR 400 453 -1127 2765 7 0 0 chr12 101160981 101161288 -42625167 - AluYa5 SINE Alu -4 307 1 10078 103 6 96 chr12 101161288 101162512 -42623943 + THE1C-int LTR MaLR 453 1580 0 1769 124 118 35 chr12 101162512 101162687 -42623768 + THE1C LTR MaLR 1 160 -215 258 32 0 0 chr12 101162687 101162718 -42623737 + (TC)n Simple_repeat Simple_repeat 1 31 0 1769 124 118 35 chr12 101162718 101162888 -42623567 + THE1C LTR MaLR 160 375 0 2287 116 139 0 chr12 101162895 101163248 -42623207 + MSTA LTR MaLR 27 428 0 312 130 37 0 chr12 101163264 101163318 -42623137 - MLT1A2 LTR MaLR -5 369 314 880 124 5 32 chr12 101163322 101163432 -42623023 + (TTCC)n Simple_repeat Simple_repeat 1 106 -74 2164 111 10 0 chr12 101163432 101163738 -42622717 - AluSc SINE Alu 0 309 1 880 124 5 32 chr12 101163738 101163812 -42622643 + (TTCC)n Simple_repeat Simple_repeat 106 180 0 1368 197 71 0 chr12 101163850 101164018 -42622437 - AluJo SINE Alu -14 298 103 222 37 0 0 chr12 101164018 101164045 -42622410 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1368 197 71 0 chr12 101164045 101164145 -42622310 - AluJo SINE Alu -209 103 11 345 122 7 0 chr12 101164175 101164232 -42622223 - MLT1A2 LTR MaLR -63 311 263 2573 113 6 3 chr12 101164496 101164859 -42621596 + THE1B LTR MaLR 1 364 0 1664 196 8 55 chr12 101165106 101165468 -42620987 + MLT1A1 LTR MaLR 19 363 -2 323 197 15 0 chr12 101165709 101165775 -42620680 - MER96 DNA MER1_type? -108 67 1 274 215 50 36 chr12 101165908 101166022 -42620433 - MLT1J1-int LTR MaLR -1276 95 2 1004 232 148 24 chr12 101166023 101166402 -42620053 - MLT1J1 LTR MaLR 0 446 21 587 271 123 17 chr12 101166864 101167100 -42619355 - LTR16C LTR ERVL -63 428 168 190 333 0 0 chr12 101167416 101167464 -42618991 - L2 LINE L2 -11 3302 3255 213 342 164 0 chr12 101167488 101167640 -42618815 - L2 LINE L2 -16 3297 3121 1369 248 116 22 chr12 101168136 101168595 -42617860 - L2 LINE L2 -1 3312 2811 612 244 86 14 chr12 101168666 101168887 -42617568 + MER20B DNA MER1_type 540 776 -7 1358 239 96 12 chr12 101168897 101169323 -42617132 - L2 LINE L2 -509 2805 2344 188 265 0 0 chr12 101169334 101169368 -42617087 - L2 LINE L2 -34 3279 3246 606 279 136 48 chr12 101169795 101170125 -42616330 - L1ME4a LINE L1 -123 5998 5640 551 311 8 63 chr12 101170136 101170390 -42616065 + MLT1I LTR MaLR 1 240 -169 321 241 13 13 chr12 101170449 101170528 -42615927 + MLT1I LTR MaLR 331 409 0 239 211 58 0 chr12 101170573 101170625 -42615830 + L2 LINE L2 3259 3313 0 342 290 82 27 chr12 101170633 101170816 -42615639 - L1ME4a LINE L1 -580 5541 5349 1307 245 202 29 chr12 101170835 101171539 -42614916 - L2 LINE L2 -1 3312 2450 1720 119 51 31 chr12 101171539 101171833 -42614622 - AluSq SINE Alu -13 300 1 1307 245 202 29 chr12 101171833 101171885 -42614570 - L2 LINE L2 -863 2450 2408 808 285 48 48 chr12 101172041 101172390 -42614065 + MLT1K LTR MaLR 189 540 -48 2335 90 3 0 chr12 101172390 101172702 -42613753 - AluSp SINE Alu 0 313 1 808 285 48 48 chr12 101172702 101172745 -42613710 + MLT1K LTR MaLR 539 581 -7 849 240 67 19 chr12 101173437 101173645 -42612810 + MIR SINE MIR 12 229 -33 1861 187 14 17 chr12 101173649 101174002 -42612453 - MLT1A1 LTR MaLR -4 361 10 180 0 0 0 chr12 101174081 101174101 -42612354 + (A)n Simple_repeat Simple_repeat 1 20 0 2009 116 24 0 chr12 101174330 101174624 -42611831 - AluSx SINE Alu -11 301 1 239 266 62 0 chr12 101174737 101174801 -42611654 - MIR SINE MIR -70 192 125 2242 104 3 0 chr12 101174876 101175184 -42611271 - AluSg SINE Alu -1 309 1 1224 63 0 0 chr12 101175199 101175422 -42611033 + (TA)n Simple_repeat Simple_repeat 1 223 0 1286 164 66 114 chr12 101175431 101175748 -42610707 - AluSx SINE Alu -10 302 1 575 275 200 0 chr12 101175816 101176016 -42610439 - MIR SINE MIR -16 246 7 2095 139 0 0 chr12 101176037 101176353 -42610102 - 7SLRNA srpRNA srpRNA -4 316 1 388 186 82 31 chr12 101176381 101176478 -42609977 - L1ME4a LINE L1 -36 6085 5984 2109 110 3 10 chr12 101176813 101177123 -42609332 + AluSq SINE Alu 1 308 -5 1798 111 0 85 chr12 101177762 101178069 -42608386 + AluSx SINE Alu 1 281 -31 189 0 0 0 chr12 101178071 101178092 -42608363 + (TA)n Simple_repeat Simple_repeat 2 22 0 344 251 50 0 chr12 101178103 101178196 -42608259 - L1MC4 LINE L1 -1339 6983 1996 596 265 65 53 chr12 101178254 101178516 -42607939 - MIR SINE MIR -4 258 2 383 314 46 13 chr12 101178695 101178848 -42607607 + MIR SINE MIR 59 216 -46 708 177 0 0 chr12 101178848 101178961 -42607494 - MER58B DNA MER1_type 0 341 229 2306 86 3 0 chr12 101178969 101179273 -42607182 + AluSx SINE Alu 1 305 -7 1787 161 35 68 chr12 101179281 101179648 -42606807 + MLT1A1 LTR MaLR 4 358 -7 1009 194 25 62 chr12 101179648 101179711 -42606744 - MER58B DNA MER1_type -2186 234 170 1625 156 17 14 chr12 101179711 101180006 -42606449 + AluJb SINE Alu 1 296 -16 1009 194 25 62 chr12 101180006 101180184 -42606271 - MER58B DNA MER1_type -2250 170 2 666 270 107 14 chr12 101180349 101180564 -42605891 - MIR SINE MIR -8 254 20 584 331 67 47 chr12 101180576 101180875 -42605580 - L2 LINE L2 -2 3270 2966 1970 118 16 29 chr12 101180993 101181306 -42605149 - AluSg SINE Alu -1 309 1 337 244 228 12 chr12 101181727 101181886 -42604569 - MIR SINE MIR -26 182 31 443 78 0 0 chr12 101182760 101182824 -42603631 - AluY SINE Alu -10 301 238 7441 108 154 97 chr12 101182824 101184429 -42602026 + pTR5 LTR ERV1 742 2438 0 1644 100 4 8 chr12 101184432 101184673 -42601782 - AluY SINE Alu -71 240 1 2126 107 0 3 chr12 101184675 101184974 -42601481 - AluSx SINE Alu -14 298 1 1660 125 4 4 chr12 101185537 101185785 -42600670 - AluSx SINE Alu -64 248 1 556 180 8 8 chr12 101185906 101186034 -42600421 + CT-rich Low_complexity Low_complexity 3 130 0 1269 154 18 27 chr12 101186373 101186594 -42599861 + MER20 DNA MER1_type 1 219 0 280 282 19 19 chr12 101187208 101187311 -42599144 + L2 LINE L2 2125 2227 -1087 1440 304 136 15 chr12 101187312 101187729 -42598726 + L2 LINE L2 1244 1609 -1705 2051 120 7 3 chr12 101187729 101188029 -42598426 + AluSx SINE Alu 1 301 -11 1440 304 136 15 chr12 101188029 101188279 -42598176 + L2 LINE L2 1609 1992 -1322 2328 80 0 19 chr12 101188503 101188815 -42597640 - AluY SINE Alu -5 306 1 815 150 0 0 chr12 101188852 101188979 -42597476 + FLAM_C SINE Alu 1 127 -16 25 0 0 0 chr12 101189270 101189295 -42597160 + AT_rich Low_complexity Low_complexity 1 25 0 491 297 66 28 chr12 101189334 101189463 -42596992 + MIR SINE MIR 74 213 -49 2240 95 20 0 chr12 101189463 101189769 -42596686 - AluSx SINE Alu 0 312 1 491 297 66 28 chr12 101189769 101189821 -42596634 + MIR SINE MIR 213 262 0 189 0 0 0 chr12 101190066 101190087 -42596368 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 23 33 0 0 chr12 101190375 101190405 -42596050 + AT_rich Low_complexity Low_complexity 1 30 0 1708 146 13 33 chr12 101190445 101190747 -42595708 - AluJb SINE Alu -16 296 1 1903 124 7 7 chr12 101191080 101191378 -42595077 + AluSx SINE Alu 1 298 -14 1099 207 31 22 chr12 101191378 101191600 -42594855 - MER58A DNA MER1_type 0 224 1 266 208 135 52 chr12 101191965 101192061 -42594394 + MLT1H LTR MaLR 333 436 -113 2072 74 4 0 chr12 101192093 101192362 -42594093 + AluSc SINE Alu 35 304 -5 223 304 36 0 chr12 101192539 101192595 -42593860 - MIR SINE MIR -1 261 204 1801 166 0 0 chr12 101192608 101192892 -42593563 - AluJb SINE Alu -25 287 4 583 260 62 39 chr12 101192896 101193104 -42593351 - MIR SINE MIR -49 213 1 4263 171 40 29 chr12 101193164 101193624 -42592831 + L1MB7 LINE L1 4864 5318 -866 2069 126 3 0 chr12 101193624 101193925 -42592530 + AluSx SINE Alu 1 302 -10 4263 171 40 29 chr12 101193925 101194757 -42591698 + L1MB7 LINE L1 5318 6176 -8 254 232 0 24 chr12 101194791 101194873 -42591582 + GA-rich Low_complexity Low_complexity 2 81 0 456 320 66 28 chr12 101194896 101195215 -42591240 - L2 LINE L2 -420 2894 2564 1393 179 107 48 chr12 101195853 101196210 -42590245 - MER69 DNA AcHobo -2 2524 2138 2326 86 0 3 chr12 101196210 101196523 -42589932 - AluSq SINE Alu -1 312 1 1393 179 107 48 chr12 101196523 101196578 -42589877 - MER69 DNA AcHobo -388 2138 2088 1071 132 0 0 chr12 101196618 101196777 -42589678 - FRAM SINE Alu -21 155 1 353 263 0 0 chr12 101197076 101197152 -42589303 - MER69 DNA AcHobo -1149 77 2 1631 188 7 10 chr12 101197418 101197722 -42588733 - AluJo SINE Alu -9 303 1 519 228 272 40 chr12 101197862 101198064 -42588391 - MIR SINE MIR 0 262 14 1529 74 0 0 chr12 101198129 101198318 -42588137 + AluY SINE Alu 1 189 -122 499 116 0 0 chr12 101198318 101198387 -42588068 + AluY SINE Alu 225 293 -18 378 91 0 0 chr12 101198507 101198562 -42587893 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 835 118 8 8 chr12 101198609 101198736 -42587719 + FLAM_C SINE Alu 1 127 -16 1306 291 31 33 chr12 101198805 101199314 -42587141 - MLT1J LTR MaLR -2 509 2 2004 101 14 0 chr12 101199866 101200144 -42586311 - AluY SINE Alu -4 307 26 1776 121 109 118 chr12 101200200 101200438 -42586017 - MSTA LTR MaLR -1 427 193 2191 106 0 0 chr12 101200438 101200739 -42585716 - AluSx SINE Alu -1 311 11 1776 121 109 118 chr12 101200739 101200931 -42585524 - MSTA LTR MaLR -235 193 1 727 297 120 13 chr12 101201362 101201662 -42584793 - L3b LINE CR1 -132 1451 1120 207 315 63 49 chr12 101201843 101201986 -42584469 - L3 LINE CR1 -759 818 674 2340 108 8 45 chr12 101202142 101202281 -42584174 - THE1B LTR MaLR 0 364 221 1776 128 58 0 chr12 101202281 101202555 -42583900 - AluSx SINE Alu -22 290 1 2340 108 8 45 chr12 101202555 101202793 -42583662 - THE1B LTR MaLR -143 221 1 1268 161 28 0 chr12 101202828 101203039 -42583416 - MER20 DNA MER1_type 0 219 3 206 333 186 8 chr12 101203208 101203337 -42583118 - MIR SINE MIR -90 172 21 540 124 9 19 chr12 101203539 101203652 -42582803 + L1MA4A LINE L1 6044 6280 -1 823 122 101 7 chr12 101203991 101204130 -42582325 + FRAM SINE Alu 1 152 -24 180 0 0 0 chr12 101204136 101204156 -42582299 + (CAA)n Simple_repeat Simple_repeat 2 21 0 358 313 56 17 chr12 101205014 101205193 -42581262 - L2 LINE L2 -1611 1703 1518 2053 172 57 117 chr12 101205228 101205879 -42580576 - LTR9 LTR ERV1 0 612 1 1759 139 0 72 chr12 101206716 101207048 -42579407 + AluSx SINE Alu 1 308 -4 853 266 62 52 chr12 101207051 101207359 -42579096 - MER102b DNA MER1_type -22 319 9 513 232 0 0 chr12 101207536 101207631 -42578824 - FLAM_C SINE Alu -36 107 13 2246 109 3 0 chr12 101207652 101207964 -42578491 - AluSq SINE Alu 0 313 1 589 226 61 37 chr12 101208540 101208704 -42577751 - MIR SINE MIR -32 230 63 2266 93 0 3 chr12 101208762 101209072 -42577383 + AluSc SINE Alu 1 309 0 2286 99 0 0 chr12 101209132 101209434 -42577021 + AluSc SINE Alu 1 302 -7 1904 156 0 7 chr12 101209590 101209892 -42576563 - AluJo SINE Alu -12 300 1 816 281 35 13 chr12 101210046 101210274 -42576181 - MIR SINE MIR -17 245 13 277 282 59 0 chr12 101211213 101211298 -42575157 + MIR SINE MIR 41 130 -78 1434 192 26 0 chr12 101211450 101211721 -42574734 + AluJo SINE Alu 5 282 -30 23 0 0 0 chr12 101211725 101211748 -42574707 + AT_rich Low_complexity Low_complexity 1 23 0 1654 147 8 0 chr12 101211904 101212163 -42574292 - AluJo SINE Alu -51 261 1 300 226 75 11 chr12 101212579 101212672 -42573783 - MLT1L LTR MaLR -5 610 512 2235 110 7 0 chr12 101212702 101213012 -42573443 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 101213039 101213060 -42573395 + AT_rich Low_complexity Low_complexity 1 21 0 6584 63 36 0 chr12 101213061 101214055 -42572400 - L1PB1 LINE L1 0 6151 5142 681 267 102 58 chr12 101214055 101214399 -42572056 - MLT1L LTR MaLR -152 463 105 366 138 126 58 chr12 101214623 101214710 -42571745 + FLAM_A SINE Alu 16 108 -25 594 275 94 16 chr12 101215165 101215409 -42571046 - L2 LINE L2 0 3313 3051 262 245 28 47 chr12 101215409 101215515 -42570940 + LTR67 LTR ERVL 454 557 0 259 241 74 93 chr12 101215951 101216059 -42570396 - MIR3 SINE MIR -26 182 77 395 306 113 26 chr12 101216254 101216519 -42569936 - L2 LINE L2 -463 2851 2564 2109 120 0 3 chr12 101216548 101216856 -42569599 + AluSg SINE Alu 1 307 -3 531 173 100 9 chr12 101216866 101216976 -42569479 + FLAM_A SINE Alu 3 122 -11 1236 199 116 25 chr12 101217339 101217615 -42568840 + AluJo SINE Alu 1 301 -1 719 185 0 23 chr12 101218493 101218623 -42567832 - FRAM SINE Alu -57 119 1 270 127 79 48 chr12 101219058 101219121 -42567334 - L2 LINE L2 0 3313 3249 259 313 25 12 chr12 101219381 101219461 -42566994 - L2 LINE L2 -1 3312 3232 634 239 12 136 chr12 101219506 101219749 -42566706 - MIR SINE MIR -32 230 18 1931 140 10 0 chr12 101219945 101220238 -42566217 + AluSx SINE Alu 1 296 -16 209 304 0 0 chr12 101220243 101220299 -42566156 + MIR SINE MIR 96 151 -111 637 269 75 28 chr12 101220989 101221157 -42565298 + MIR SINE MIR 38 219 -43 2198 111 0 0 chr12 101221157 101221464 -42564991 + AluSx SINE Alu 1 307 -5 637 269 75 28 chr12 101221464 101221507 -42564948 + MIR SINE MIR 219 259 -3 2318 81 7 0 chr12 101221776 101222084 -42564371 + AluSp SINE Alu 1 310 -3 643 229 0 0 chr12 101222655 101222777 -42563678 - L2 LINE L2 0 3313 3192 229 313 71 54 chr12 101222784 101222896 -42563559 + MIR SINE MIR 90 203 -59 636 218 55 18 chr12 101222946 101223111 -42563344 + LTR33 LTR ERVL 342 512 -9 2070 160 2 72 chr12 101223827 101224126 -42562329 - MLT1B LTR MaLR 0 390 127 2069 118 7 3 chr12 101224126 101224432 -42562023 - AluSx SINE Alu -5 307 1 2070 160 2 72 chr12 101224432 101224551 -42561904 - MLT1B LTR MaLR -263 127 1 358 203 13 51 chr12 101224565 101224644 -42561811 + MER91B DNA MER1_type 113 188 -2 920 181 0 34 chr12 101225280 101225445 -42561010 + MER3 DNA MER1_type 2 115 -47 1688 174 0 13 chr12 101225445 101225744 -42560711 + AluJo SINE Alu 1 295 -17 920 181 0 34 chr12 101225744 101225755 -42560700 + MER3 DNA MER1_type 115 125 -37 2814 3 0 0 chr12 101226752 101227089 -42559366 - AluY SINE Alu 0 337 1 361 307 90 48 chr12 101227148 101227677 -42558778 + L2 LINE L2 2721 3264 -8 1319 180 157 0 chr12 101227823 101228084 -42558371 + AluJb SINE Alu 1 302 0 594 316 81 21 chr12 101228208 101228341 -42558114 + L2 LINE L2 2511 2635 -679 1290 199 33 93 chr12 101228341 101228379 -42558076 + MLT1A2 LTR MaLR 1 40 -334 2384 64 0 0 chr12 101228379 101228675 -42557780 - AluY SINE Alu -15 296 1 1290 199 33 93 chr12 101228675 101228805 -42557650 + MLT1A2 LTR MaLR 40 176 -198 2045 106 7 13 chr12 101228805 101229107 -42557348 + AluSq SINE Alu 1 300 -13 1290 199 33 93 chr12 101229107 101229335 -42557120 + MLT1A2 LTR MaLR 176 374 0 594 316 81 21 chr12 101229335 101229584 -42556871 + L2 LINE L2 2635 2916 -398 725 286 81 26 chr12 101229638 101229911 -42556544 + L2 LINE L2 3020 3307 -6 459 254 49 36 chr12 101230427 101230625 -42555830 + MIR SINE MIR 20 217 -45 2135 107 0 0 chr12 101230682 101231012 -42555443 + AluSx SINE Alu 1 330 0 299 0 0 73 chr12 101231080 101231135 -42555320 + (TG)n Simple_repeat Simple_repeat 2 52 0 202 279 0 0 chr12 101231274 101231317 -42555138 + L2 LINE L2 2605 2647 -667 285 270 270 7 chr12 101231384 101231536 -42554919 + MIR SINE MIR 3 194 -68 310 276 66 53 chr12 101231957 101232109 -42554346 + L2 LINE L2 3116 3269 -3 5809 33 11 1 chr12 101232188 101233055 -42553400 + SVA Other Other 1 1419 0 2283 89 3 0 chr12 101233070 101233373 -42553082 + AluSp SINE Alu 1 304 -9 714 245 7 0 chr12 101233389 101233536 -42552919 + MIR SINE MIR 5 152 -110 203 56 83 0 chr12 101233537 101233573 -42552882 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 192 280 151 21 chr12 101233575 101233668 -42552787 + MIR SINE MIR 158 262 0 434 289 7 21 chr12 101233927 101234069 -42552386 - MLT1I LTR MaLR -229 180 41 533 214 118 101 chr12 101234530 101234594 -42551861 - MIR SINE MIR -51 211 150 2166 79 4 0 chr12 101234594 101235047 -42551408 - AluSp SINE Alu 0 456 3 533 214 118 101 chr12 101235047 101235159 -42551296 - MIR SINE MIR -112 150 31 750 78 16 48 chr12 101238432 101238811 -42547644 + (CA)n Simple_repeat Simple_repeat 1 366 0 187 258 22 90 chr12 101241037 101241088 -42545367 - L2 LINE L2 0 3272 3228 369 102 0 0 chr12 101241088 101241147 -42545308 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 187 258 22 90 chr12 101241147 101241184 -42545271 - L2 LINE L2 -44 3228 3190 344 219 0 0 chr12 101241811 101241875 -42544580 + Charlie8 DNA MER1_type 2340 2403 -14 1947 133 10 0 chr12 101242537 101242839 -42543616 - AluSx SINE Alu -7 305 1 881 171 79 0 chr12 101242962 101243126 -42543329 + AluJo SINE Alu 1 177 -135 674 142 0 26 chr12 101243383 101243496 -42542959 + FLAM_C SINE Alu 2 111 -32 2116 124 0 0 chr12 101245168 101245467 -42540988 + AluSx SINE Alu 3 301 -11 777 279 94 26 chr12 101245696 101246037 -42540418 + L2 LINE L2 2575 2938 -376 914 176 6 6 chr12 101246052 101246211 -42540244 - AluJb SINE Alu -17 295 137 612 277 176 25 chr12 101246221 101246499 -42539956 + L2 LINE L2 2994 3313 0 233 322 104 16 chr12 101247278 101247461 -42538994 - L2 LINE L2 -1106 2208 2010 370 277 43 64 chr12 101247521 101247662 -42538793 + L2 LINE L2 3172 3309 -4 365 272 44 0 chr12 101247765 101247879 -42538576 + MIR SINE MIR 139 257 -5 1944 150 0 6 chr12 101247942 101248256 -42538199 - AluJb SINE Alu 0 312 1 741 186 18 0 chr12 101248365 101248532 -42537923 - L1MA4 LINE L1 -7 6293 6124 605 121 0 0 chr12 101248532 101248615 -42537840 - AluS SINE Alu -228 84 2 4063 157 4 12 chr12 101248616 101249302 -42537153 - L1MA4 LINE L1 -159 6141 5461 284 180 0 0 chr12 101249311 101249361 -42537094 - AluJb SINE Alu -169 133 84 1328 122 5 33 chr12 101249361 101249575 -42536880 - AluJo SINE Alu -94 218 11 565 121 33 0 chr12 101249587 101249678 -42536777 - L1MA4 LINE L1 -828 5472 5379 441 275 20 110 chr12 101249995 101250122 -42536333 + MIR3 SINE MIR 22 159 -49 1660 182 3 10 chr12 101250122 101250418 -42536037 + AluJb SINE Alu 1 294 -18 441 275 20 110 chr12 101250418 101250451 -42536004 + MIR3 SINE MIR 159 163 -45 1527 250 77 60 chr12 101250451 101250987 -42535468 + MLT1H LTR MaLR 5 549 0 441 275 20 110 chr12 101250987 101251025 -42535430 + MIR3 SINE MIR 163 203 -5 304 319 115 45 chr12 101251549 101251706 -42534749 - MIR3 SINE MIR -12 196 29 2066 133 0 3 chr12 101251712 101252020 -42534435 - AluSx SINE Alu -5 307 1 1556 163 53 20 chr12 101252055 101252356 -42534099 + AluJb SINE Alu 1 311 -1 331 269 216 54 chr12 101252528 101252550 -42533905 - L2 LINE L2 -4 3309 3292 2220 103 7 3 chr12 101252550 101252860 -42533595 + AluSx SINE Alu 1 311 -1 331 269 216 54 chr12 101252860 101253143 -42533312 - L2 LINE L2 -21 3292 2931 2253 103 0 0 chr12 101253143 101253455 -42533000 + AluSx SINE Alu 1 312 0 331 269 216 54 chr12 101253455 101253519 -42532936 - L2 LINE L2 -382 2931 2879 274 360 133 7 chr12 101253654 101253804 -42532651 - MIR SINE MIR -14 248 80 1999 141 0 0 chr12 101253906 101254196 -42532259 - AluSx SINE Alu -22 290 1 268 327 140 0 chr12 101254239 101254346 -42532109 + L2 LINE L2 3151 3272 0 253 208 198 31 chr12 101254418 101254514 -42531941 - MIR3 SINE MIR -93 115 4 2228 138 30 25 chr12 101254997 101255359 -42531096 - THE1B LTR MaLR 0 364 1 2199 106 0 0 chr12 101255527 101255829 -42530626 + AluSc SINE Alu 1 302 -7 32 0 0 0 chr12 101256141 101256173 -42530282 + AT_rich Low_complexity Low_complexity 1 32 0 1069 165 58 53 chr12 101256175 101256418 -42530037 - AluJo SINE Alu -68 244 1 388 250 21 0 chr12 101257045 101257141 -42529314 - MER112 DNA MER1_type -10 250 153 1849 104 64 4 chr12 101257190 101257470 -42528985 - AluSx SINE Alu -13 299 3 1520 159 17 35 chr12 101257562 101257896 -42528559 + AluJo SINE Alu 1 329 0 308 262 84 0 chr12 101257902 101258009 -42528446 - MER112 DNA MER1_type -144 116 1 255 250 0 0 chr12 101258118 101258170 -42528285 + LTR30 LTR ERV1 1 52 -670 950 135 3 177 chr12 101258170 101258452 -42528003 + LTR12 LTR ERV1 53 285 -429 371 222 11 0 chr12 101258452 101258542 -42527913 + LTR30 LTR ERV1 552 642 -80 750 109 0 0 chr12 101258544 101258645 -42527810 + LTR12 LTR ERV1 481 581 -133 2104 168 23 8 chr12 101258651 101259003 -42527452 + MLT1A1 LTR MaLR 9 365 0 222 255 242 78 chr12 101259038 101259191 -42527264 - MIR3 SINE MIR -15 193 16 443 310 19 26 chr12 101259214 101259369 -42527086 + MIR SINE MIR 1 154 -108 218 285 15 85 chr12 101261629 101261759 -42524696 - L2 LINE L2 -180 3092 2972 204 222 0 0 chr12 101261832 101261868 -42524587 - MER5B DNA MER1_type -139 39 4 287 281 74 25 chr12 101261939 101262060 -42524395 + L3b LINE CR1 1280 1406 -177 1630 188 20 62 chr12 101262170 101262434 -42524021 - MER58B DNA MER1_type -2079 341 94 2322 168 43 9 chr12 101262434 101262551 -42523904 + L1MB2 LINE L1 5709 5821 -350 1752 160 3 0 chr12 101262551 101262875 -42523580 + AluJo SINE Alu 1 312 0 2322 168 43 9 chr12 101262875 101263203 -42523252 + L1MB2 LINE L1 5821 6169 -2 1630 188 20 62 chr12 101263203 101263294 -42523161 - MER58B DNA MER1_type -2326 94 1 268 227 45 45 chr12 101263542 101263630 -42522825 - MIR SINE MIR -89 119 32 272 276 91 87 chr12 101263935 101264221 -42522234 + MLT1I LTR MaLR 123 409 0 1886 134 0 38 chr12 101264596 101264916 -42521539 - AluJb SINE Alu -4 308 1 2323 94 0 0 chr12 101265397 101265704 -42520751 + AluSg SINE Alu 4 310 0 609 182 0 50 chr12 101265704 101265825 -42520630 - FLAM_A SINE Alu -18 115 1 2465 125 67 28 chr12 101265828 101265845 -42520610 - L1MC1 LINE L1 -8 6325 6310 2015 126 0 28 chr12 101265845 101266162 -42520293 - AluSx SINE Alu -4 308 1 2465 125 67 28 chr12 101266162 101266576 -42519879 - L1MC1 LINE L1 -23 6310 5877 202 309 73 45 chr12 101266964 101267074 -42519381 - L2 LINE L2 -35 3237 3125 372 256 80 24 chr12 101267140 101267265 -42519190 - MER5B DNA MER1_type -44 134 3 335 218 207 0 chr12 101267265 101267348 -42519107 + MER5A DNA MER1_type 86 186 -3 1926 107 7 45 chr12 101267688 101267997 -42518458 - AluSq SINE Alu -16 297 1 216 198 26 43 chr12 101268422 101268538 -42517917 + (CGCGG)n Simple_repeat Simple_repeat 1 114 0 231 131 16 66 chr12 101268890 101268957 -42517498 + G-rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr12 101270851 101270872 -42515583 + (T)n Simple_repeat Simple_repeat 1 21 0 190 205 26 0 chr12 101271072 101271111 -42515344 + L2 LINE L2 3255 3294 -19 941 169 132 5 chr12 101271318 101271507 -42514948 + MER20 DNA MER1_type 2 214 -5 507 208 0 0 chr12 101272364 101272460 -42513995 - FLAM_A SINE Alu -42 100 5 249 208 186 91 chr12 101272743 101272974 -42513481 - L1ME4a LINE L1 0 6121 5869 306 0 0 0 chr12 101273584 101273618 -42512837 + (TG)n Simple_repeat Simple_repeat 1 34 0 1196 130 90 5 chr12 101274168 101274391 -42512064 - L1MA5A LINE L1 -3 6294 6053 425 120 250 9 chr12 101274487 101274595 -42511860 - L1ME3 LINE L1 0 6162 6029 1073 157 0 50 chr12 101274615 101274768 -42511687 - AluJo SINE Alu -26 286 144 1829 151 3 3 chr12 101274768 101275066 -42511389 - AluSx SINE Alu -14 298 1 1073 157 0 50 chr12 101275066 101275110 -42511345 - AluJo SINE Alu -168 144 99 1206 186 155 8 chr12 101275442 101275706 -42510749 + AluY SINE Alu 1 303 -8 433 333 68 12 chr12 101276212 101276374 -42510081 + L2 LINE L2 2650 2820 -494 1978 142 0 0 chr12 101276627 101276930 -42509525 - AluSx SINE Alu -9 303 1 2092 87 18 0 chr12 101277008 101277284 -42509171 - AluSg SINE Alu -29 281 1 234 273 55 45 chr12 101277475 101277585 -42508870 + L2 LINE L2 3123 3233 -39 2160 106 0 0 chr12 101277762 101278054 -42508401 + AluSx SINE Alu 1 292 -20 916 168 5 26 chr12 101279573 101279763 -42506692 - AluJo SINE Alu -8 304 119 1915 111 46 0 chr12 101280414 101280694 -42505761 - AluSg SINE Alu -6 304 12 2094 109 3 0 chr12 101282151 101282455 -42504000 - AluSx SINE Alu -7 305 1 196 258 30 30 chr12 101284225 101284291 -42502164 - L2 LINE L2 -2036 1278 1213 312 27 0 0 chr12 101284665 101284702 -42501753 + (CA)n Simple_repeat Simple_repeat 1 37 0 441 262 191 38 chr12 101285076 101285286 -42501169 + MIR SINE MIR 15 256 -6 390 21 0 0 chr12 101285583 101285630 -42500825 + (TG)n Simple_repeat Simple_repeat 2 48 0 330 241 13 0 chr12 101285656 101285735 -42500720 + MER116 DNA Mariner 1 80 0 239 260 26 39 chr12 101287085 101287162 -42499293 - L2 LINE L2 -4 3309 3234 1789 141 11 3 chr12 101287827 101288110 -42498345 - AluJo SINE Alu -10 302 18 2169 115 0 0 chr12 101288252 101288564 -42497891 + AluSx SINE Alu 1 312 0 1912 135 7 10 chr12 101289733 101290037 -42496418 - AluJb SINE Alu -9 303 1 863 236 25 33 chr12 101290770 101291012 -42495443 - MIR SINE MIR 0 262 23 1416 197 14 0 chr12 101291076 101291365 -42495090 + AluJo SINE Alu 1 293 -19 1262 203 111 21 chr12 101291365 101291745 -42494710 + LTR37A LTR ERV1 13 426 0 2288 79 0 7 chr12 101291757 101292061 -42494394 + AluSx SINE Alu 1 302 -10 852 218 22 0 chr12 101292542 101292721 -42493734 + L1PB4 LINE L1 5966 6148 -8 2460 53 0 0 chr12 101292752 101293051 -42493404 - AluY SINE Alu -12 299 1 205 233 17 17 chr12 101294315 101294375 -42492080 + CT-rich Low_complexity Low_complexity 2 61 0 2246 87 0 13 chr12 101294486 101294795 -42491660 - AluSq SINE Alu -8 305 1 363 323 19 38 chr12 101296336 101296494 -42489961 - L2 LINE L2 -203 3069 2915 198 294 157 10 chr12 101296689 101296791 -42489664 - L2 LINE L2 -58 3214 3098 3009 115 7 2 chr12 101296846 101297272 -42489183 - MSTA LTR MaLR 0 428 1 385 203 20 150 chr12 101298276 101298429 -42488026 + MIR SINE MIR 90 222 -40 214 270 135 0 chr12 101298430 101298504 -42487951 + MIR SINE MIR 139 222 -40 286 303 79 0 chr12 101298505 101298594 -42487861 + MIR SINE MIR 139 234 -28 573 263 46 37 chr12 101299625 101299821 -42486634 - MIR SINE MIR -38 224 31 1859 155 10 7 chr12 101299956 101300266 -42486189 + AluJb SINE Alu 1 311 -1 332 329 0 0 chr12 101300538 101300767 -42485688 + (CA)n Simple_repeat Simple_repeat 1 229 0 293 250 37 19 chr12 101300899 101301007 -42485448 + GA-rich Low_complexity Low_complexity 3 112 0 637 281 109 9 chr12 101301826 101302047 -42484408 + MIR SINE MIR 6 248 -14 467 105 0 40 chr12 101302134 101302210 -42484245 + FLAM SINE Alu 54 126 -17 2453 72 0 0 chr12 101302241 101302548 -42483907 + AluSc SINE Alu 1 307 -2 329 282 28 63 chr12 101302916 101303058 -42483397 + MIR SINE MIR 103 239 -23 264 309 0 37 chr12 101303153 101303234 -42483221 + L2 LINE L2 3195 3272 0 1848 204 40 26 chr12 101303352 101303627 -42482828 - MLT1C LTR MaLR -5 462 177 2196 114 0 0 chr12 101303627 101303933 -42482522 - AluSg SINE Alu -4 306 1 1848 204 40 26 chr12 101303933 101304113 -42482342 - MLT1C LTR MaLR -290 177 1 2011 161 32 12 chr12 101304123 101304464 -42481991 + MER7A DNA MER2_type 1 346 0 1946 113 32 0 chr12 101305604 101305887 -42480568 - AluSq SINE Alu -21 292 1 317 306 45 90 chr12 101305976 101306352 -42480103 - L2 LINE L2 -86 3186 2828 2286 91 6 25 chr12 101306392 101306710 -42479745 + AluSx SINE Alu 1 312 0 825 146 0 29 chr12 101306732 101306869 -42479586 + FLAM_C SINE Alu 5 137 -6 919 150 0 67 chr12 101306907 101307087 -42479368 + AluJo SINE Alu 121 288 -24 285 289 60 45 chr12 101308742 101308943 -42477512 - MIR SINE MIR -35 227 24 2011 131 16 7 chr12 101309919 101310225 -42476230 - AluSx SINE Alu 0 312 4 201 147 0 0 chr12 101310672 101310706 -42475749 + (TG)n Simple_repeat Simple_repeat 1 34 0 1371 229 76 35 chr12 101310862 101311294 -42475161 - MLT1C LTR MaLR 0 467 18 491 195 0 0 chr12 101311392 101311479 -42474976 + AluJ/FLAM SINE Alu 1 87 -225 966 195 0 6 chr12 101311738 101311912 -42474543 + FAM SINE Alu 1 173 -2 404 204 110 18 chr12 101312395 101312522 -42473933 - MIR SINE MIR -63 145 33 290 247 82 0 chr12 101313108 101313193 -42473262 + MIR SINE MIR 49 140 -122 197 218 73 0 chr12 101314546 101314601 -42471854 - MIR SINE MIR -88 174 116 297 0 0 0 chr12 101315530 101315563 -42470892 + (TG)n Simple_repeat Simple_repeat 2 34 0 471 283 99 13 chr12 101316348 101316581 -42469874 + MIR SINE MIR 10 262 0 984 158 174 45 chr12 101317260 101317525 -42468930 - L1MB8 LINE L1 -9 6169 5871 2214 95 18 0 chr12 101317556 101317671 -42468784 + AluSx SINE Alu 13 125 -187 2352 59 24 3 chr12 101317671 101317960 -42468495 + AluY SINE Alu 1 295 -16 2214 95 18 0 chr12 101317960 101318129 -42468326 + AluSx SINE Alu 125 302 -10 467 237 0 2 chr12 101318265 101318376 -42468079 - L1MB8 LINE L1 -306 5825 5724 21 36 0 0 chr12 101318541 101318569 -42467886 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 101320119 101320140 -42466315 + AT_rich Low_complexity Low_complexity 1 21 0 284 318 110 0 chr12 101320319 101320492 -42465963 + MIR SINE MIR 71 262 0 1562 144 0 25 chr12 101320520 101320763 -42465692 + AluJo SINE Alu 45 281 -31 189 0 0 0 chr12 101320768 101320789 -42465666 + (CAT)n Simple_repeat Simple_repeat 2 22 0 299 228 87 22 chr12 101320790 101320882 -42465573 - MIR SINE MIR -116 146 49 743 239 28 28 chr12 101322870 101322945 -42463510 - MIR SINE MIR -32 230 156 1391 169 0 4 chr12 101322945 101323182 -42463273 - MER46A DNA MER2_type 0 236 1 743 239 28 28 chr12 101323182 101323319 -42463136 - MIR SINE MIR -105 157 18 13235 106 45 30 chr12 101325076 101327082 -42459373 + Tigger1 DNA MER2_type 1 2040 -378 2254 110 3 3 chr12 101327082 101327392 -42459063 + AluSq SINE Alu 1 310 -3 13235 106 45 30 chr12 101327392 101327462 -42458993 + Tigger1 DNA MER2_type 2040 2107 -311 255 358 91 48 chr12 101327913 101328100 -42458355 - L2 LINE L2 0 3272 3078 2121 128 3 0 chr12 101328147 101328437 -42458018 + AluSx SINE Alu 1 291 -21 289 320 66 73 chr12 101328688 101329069 -42457386 - L2 LINE L2 -10 3262 2885 184 275 271 13 chr12 101329060 101329532 -42456923 - L2 LINE L2 -556 2758 2165 * 1378 38 0 0 chr12 101329685 101329844 -42456611 - MER4E LTR ERV1 -10 756 598 1570 78 41 5 chr12 101329849 101330068 -42456387 - MER4E LTR ERV1 -539 227 1 871 227 24 36 chr12 101332071 101332318 -42454137 - MIR SINE MIR -12 250 7 2190 100 28 0 chr12 101333373 101333662 -42452793 + AluSx SINE Alu 1 297 -15 847 136 7 29 chr12 101334266 101334406 -42452049 + FLAM_C SINE Alu 1 137 -6 427 367 42 9 chr12 101334919 101335134 -42451321 + L2 LINE L2 3051 3272 0 187 283 206 11 chr12 101335647 101335739 -42450716 + L2 LINE L2 3198 3307 -6 725 198 53 43 chr12 101336000 101336121 -42450334 - MER5A DNA MER1_type 0 189 64 2152 146 0 0 chr12 101336121 101336422 -42450033 - AluSx SINE Alu -11 301 1 725 198 53 43 chr12 101336422 101336487 -42449968 - MER5A DNA MER1_type -125 64 1 814 125 23 23 chr12 101336920 101337048 -42449407 - FLAM_A SINE Alu -9 133 6 1650 182 7 32 chr12 101338082 101338390 -42448065 - AluJb SINE Alu -12 300 1 1763 167 7 7 chr12 101338604 101338903 -42447552 + AluJo SINE Alu 1 299 -13 443 258 161 38 chr12 101338906 101339092 -42447363 - MIR SINE MIR 0 262 54 1729 185 23 0 chr12 101339507 101339809 -42446646 + AluJb SINE Alu 1 309 -3 359 329 14 0 chr12 101339893 101340033 -42446422 + L1M4 LINE L1 3359 3500 -2646 353 261 63 0 chr12 101340089 101340200 -42446255 + MIR SINE MIR 52 169 -93 32 26 0 0 chr12 101340817 101340856 -42445599 + AT_rich Low_complexity Low_complexity 1 39 0 192 303 86 31 chr12 101343115 101343277 -42443178 - MIR3 SINE MIR -12 196 26 2347 103 0 0 chr12 101344654 101344955 -42441500 + AluSq SINE Alu 1 301 -12 707 239 122 9 chr12 101345156 101345378 -42441077 - MIR SINE MIR 0 262 16 294 29 0 0 chr12 101345593 101345628 -42440827 + (TG)n Simple_repeat Simple_repeat 2 36 0 2219 127 0 0 chr12 101347343 101347634 -42438821 + AluSx SINE Alu 1 291 -21 7769 196 45 26 chr12 101347944 101350600 -42435855 + L1MB4 LINE L1 2198 5435 -981 2254 126 0 0 chr12 101350600 101350910 -42435545 + AluSg SINE Alu 1 310 0 7769 196 45 26 chr12 101350910 101351884 -42434571 + L1MB4 LINE L1 5435 6389 -27 414 0 0 0 chr12 101351884 101351930 -42434525 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 222 0 0 chr12 101402332 101402377 -42384078 - AluJ/monomer SINE Alu -254 47 3 2032 113 0 17 chr12 101402870 101403163 -42383292 + AluSx SINE Alu 1 288 -24 243 0 0 0 chr12 101403166 101403193 -42383262 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1872 167 10 0 chr12 101403750 101404049 -42382406 - AluJo SINE Alu -10 302 1 1960 144 0 0 chr12 101404400 101404678 -42381777 + AluSg SINE Alu 1 278 -32 283 240 107 33 chr12 101404703 101404853 -42381602 - L1ME4a LINE L1 -2 6119 5959 1044 84 23 0 chr12 101404864 101404995 -42381460 - AluSq/x SINE Alu -179 134 1 22 35 0 0 chr12 101405005 101405034 -42381421 + AT_rich Low_complexity Low_complexity 1 29 0 722 47 0 0 chr12 101405061 101405147 -42381308 + L1PA12 LINE L1 6083 6168 0 319 320 20 0 chr12 101405377 101405562 -42380893 - L1MC4a LINE L1 -340 5824 5734 2127 135 0 3 chr12 101405563 101405866 -42380589 - AluSq SINE Alu -11 302 1 2338 93 0 3 chr12 101405875 101406177 -42380278 - AluSq SINE Alu -11 302 2 301 305 175 0 chr12 101406640 101406794 -42379661 + MIR SINE MIR 28 208 -54 299 216 113 92 chr12 101406796 101406889 -42379566 - MLT1K LTR MaLR 0 588 498 2324 104 0 3 chr12 101406889 101407188 -42379267 + AluSx SINE Alu 1 298 -14 299 216 113 92 chr12 101407188 101407279 -42379176 - MLT1K LTR MaLR -90 498 400 529 265 110 20 chr12 101407406 101407606 -42378849 - MLT1K LTR MaLR -347 241 24 2151 111 20 0 chr12 101408403 101408700 -42377755 - AluSx SINE Alu -5 307 5 874 260 74 13 chr12 101408934 101409165 -42377290 + MIR SINE MIR 5 249 -13 401 279 31 9 chr12 101409412 101409543 -42376912 + MIR SINE MIR 22 155 -53 751 242 108 39 chr12 101409546 101409961 -42376494 + LTR33A LTR ERVL 1 479 -44 431 233 0 0 chr12 101409971 101410061 -42376394 + L1MDa LINE L1 18 107 -6433 2207 91 0 56 chr12 101410065 101410384 -42376071 + AluSg SINE Alu 1 301 -9 1947 147 10 10 chr12 101410395 101410694 -42375761 + AluSx SINE Alu 1 299 -13 455 284 127 13 chr12 101411303 101411539 -42374916 - Charlie2 DNA MER1_type -2519 263 1 450 300 18 0 chr12 101411628 101411738 -42374717 - L2 LINE L2 -593 2721 2610 679 227 13 13 chr12 101411747 101411897 -42374558 + AluJb SINE Alu 137 286 -26 570 158 35 76 chr12 101412023 101412194 -42374261 - Charlie5 DNA MER1_type -28 2584 2421 2309 83 0 17 chr12 101412194 101412494 -42373961 + AluSp SINE Alu 1 295 -18 2233 130 0 0 chr12 101412523 101412830 -42373625 + AluSc SINE Alu 1 307 -2 23 0 0 0 chr12 101412866 101412889 -42373566 + AT_rich Low_complexity Low_complexity 1 23 0 421 284 6 48 chr12 101413133 101413467 -42372988 + CT-rich Low_complexity Low_complexity 1 319 0 1764 138 24 0 chr12 101413931 101414221 -42372234 - L1PA15 LINE L1 -2 6163 5867 202 277 21 0 chr12 101414314 101414361 -42372094 + L2 LINE L2 3008 3055 -258 252 86 0 0 chr12 101414400 101414435 -42372020 + (CA)n Simple_repeat Simple_repeat 1 35 0 1202 127 0 0 chr12 101415492 101415650 -42370805 + AluSg/x SINE Alu 122 279 -33 216 0 0 0 chr12 101415652 101415676 -42370779 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2042 118 3 16 chr12 101415774 101416079 -42370376 + AluSg SINE Alu 1 301 -9 498 265 18 16 chr12 101416353 101416645 -42369810 + MLT1I LTR MaLR 64 395 -14 3125 146 14 34 chr12 101416738 101417228 -42369227 - MER41D LTR ERV1 0 557 78 2575 43 0 0 chr12 101417228 101417529 -42368926 - AluY SINE Alu -10 301 1 3125 146 14 34 chr12 101417529 101417606 -42368849 - MER41D LTR ERV1 -479 78 1 5988 199 58 81 chr12 101417749 101418351 -42368104 + L1ME LINE L1 3232 3846 -2320 2101 114 3 7 chr12 101418351 101418649 -42367806 + AluSq SINE Alu 1 297 -16 5988 199 58 81 chr12 101418649 101419455 -42367000 + L1ME LINE L1 3846 4669 -1497 514 144 22 33 chr12 101419455 101419545 -42366910 + FRAM SINE Alu 76 164 -12 5988 199 58 81 chr12 101419545 101420519 -42365936 + L1ME LINE L1 4669 5639 -527 3835 183 9 19 chr12 101420748 101421601 -42364854 - L1P LINE L1 -1980 4166 3322 238 203 0 62 chr12 101421677 101421741 -42364714 - L1ME LINE L1 -461 5660 5601 345 280 0 17 chr12 101422809 101422927 -42363528 + 7SK RNA RNA 1 116 -77 348 318 71 24 chr12 101422942 101423197 -42363258 - L2 LINE L2 -1063 2251 1985 2187 124 0 3 chr12 101423237 101423543 -42362912 - AluSg SINE Alu -5 305 1 260 340 161 6 chr12 101423780 101423942 -42362513 + MIR SINE MIR 42 228 -34 2338 150 25 9 chr12 101425185 101425245 -42361210 - L1PA16 LINE L1 -130 6036 5978 1830 139 32 0 chr12 101425245 101425525 -42360930 - AluSx SINE Alu -23 289 1 2338 150 25 9 chr12 101425525 101425904 -42360551 - L1PA16 LINE L1 -188 5978 5590 636 251 159 37 chr12 101426451 101426722 -42359733 + MLT1I LTR MaLR 40 343 -66 2906 166 37 21 chr12 101427108 101428100 -42358355 - L1P4 LINE L1 -557 5609 4615 540 148 0 0 chr12 101428249 101428357 -42358098 + (G)n Simple_repeat Simple_repeat 1 108 0 1487 239 199 10 chr12 101428425 101429049 -42357406 + LTR50 LTR ERVL 54 795 0 1058 223 85 3 chr12 101430093 101430398 -42356057 - L1ME LINE L1 -463 5703 5374 22 56 0 0 chr12 101430985 101431021 -42355434 + AT_rich Low_complexity Low_complexity 1 36 0 250 291 29 81 chr12 101431143 101431315 -42355140 - MIR SINE MIR -26 236 74 695 191 8 24 chr12 101431647 101431773 -42354682 + FLAM_A SINE Alu 1 124 -9 1732 155 29 4 chr12 101433410 101433710 -42352745 + AluSx SINE Alu 1 307 0 889 83 0 0 chr12 101433713 101433822 -42352633 + AluSg SINE Alu 1 109 -201 286 310 78 9 chr12 101434154 101434270 -42352185 - MIR SINE MIR -66 196 73 993 166 135 15 chr12 101434450 101434767 -42351688 + Charlie1b DNA MER1_type 1 376 -147 272 116 0 0 chr12 101434815 101434858 -42351597 + Charlie1b DNA MER1_type 476 518 -5 25 0 0 0 chr12 101435364 101435389 -42351066 + AT_rich Low_complexity Low_complexity 1 25 0 715 101 0 0 chr12 101435425 101435524 -42350931 + AluSq SINE Alu 1 99 -213 1058 116 0 0 chr12 101435524 101435670 -42350785 + AluSp/q SINE Alu 161 306 -7 297 68 0 0 chr12 101435905 101435949 -42350506 + (TG)n Simple_repeat Simple_repeat 2 45 0 2076 120 0 22 chr12 101437220 101437537 -42348918 + AluSq SINE Alu 1 310 -3 2066 93 0 90 chr12 101437554 101437877 -42348578 + AluSg SINE Alu 1 294 -16 187 254 209 0 chr12 101437894 101437961 -42348494 + MIR SINE MIR 176 256 -6 342 333 113 5 chr12 101438830 101439034 -42347421 + L2 LINE L2 1142 1367 -1947 320 284 117 49 chr12 101439162 101439426 -42347029 + L2 LINE L2 1978 2259 -1055 802 80 0 0 chr12 101439426 101439526 -42346929 - AluSp/q SINE Alu -9 304 205 1657 84 0 5 chr12 101439526 101439739 -42346716 - AluSq SINE Alu -79 234 23 228 245 0 0 chr12 101439743 101439792 -42346663 + L2 LINE L2 2253 2301 -1013 1239 174 86 65 chr12 101439954 101440340 -42346115 + MER110A LTR ERV1 1 394 -74 315 339 31 8 chr12 101441079 101441206 -42345249 + L1MC4a LINE L1 5004 5133 -1013 646 213 93 39 chr12 101441307 101441565 -42344890 + L1MC4a LINE L1 5283 5554 -2254 2688 45 0 0 chr12 101441596 101441906 -42344549 - AluY SINE Alu -1 310 1 476 117 180 0 chr12 101441916 101442027 -42344428 - L1MC3 LINE L1 0 7785 7655 * 2640 145 69 12 chr12 101442023 101442532 -42343923 - L1MC3 LINE L1 -604 7181 6644 522 225 96 0 chr12 101442565 101442743 -42343712 + L1MC4a LINE L1 5670 5864 -1944 1689 165 10 30 chr12 101443345 101443642 -42342813 - AluJo SINE Alu -19 293 3 1829 161 0 0 chr12 101443802 101444082 -42342373 + AluJo SINE Alu 3 282 -30 5199 163 23 15 chr12 101444205 101445527 -42340928 + L1PA16 LINE L1 4631 5941 -225 1729 174 30 0 chr12 101445527 101445825 -42340630 + AluJo SINE Alu 1 307 -5 2221 98 0 7 chr12 101445825 101446120 -42340335 + AluSg SINE Alu 1 294 -16 5199 163 23 15 chr12 101446120 101446314 -42340141 + L1PA16 LINE L1 5940 6157 -9 1313 187 103 22 chr12 101446813 101447086 -42339369 - AluJb SINE Alu -15 297 3 1617 181 6 31 chr12 101447159 101447479 -42338976 + AluJb SINE Alu 1 312 0 24 53 0 0 chr12 101447511 101447549 -42338906 + AT_rich Low_complexity Low_complexity 1 38 0 1806 170 3 19 chr12 101448451 101448768 -42337687 + AluJb SINE Alu 1 312 0 804 163 0 22 chr12 101448780 101448915 -42337540 + FLAM_C SINE Alu 2 133 0 1932 157 61 0 chr12 101449471 101449814 -42336641 - MSTB LTR MaLR 0 426 63 180 0 0 0 chr12 101449818 101449838 -42336617 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1128 161 0 55 chr12 101449848 101450066 -42336389 - AluJo SINE Alu -106 206 1 23 0 0 0 chr12 101450553 101450576 -42335879 + AT_rich Low_complexity Low_complexity 1 23 0 2257 124 0 0 chr12 101450612 101450919 -42335536 - AluSc SINE Alu -2 307 1 827 105 0 0 chr12 101450945 101451059 -42335396 - AluSg/x SINE Alu -14 296 183 516 246 6 42 chr12 101451250 101451417 -42335038 + L1ME2 LINE L1 5777 5937 -227 295 300 60 10 chr12 101451425 101451525 -42334930 - Charlie6 DNA MER1_type -3304 196 92 2016 129 3 10 chr12 101451539 101451834 -42334621 - AluY SINE Alu -18 293 1 2388 83 3 0 chr12 101451929 101452231 -42334224 - AluSx SINE Alu -9 303 1 389 168 239 9 chr12 101452695 101452808 -42333647 + MER58C DNA MER1_type 66 204 -11 2062 144 7 0 chr12 101452881 101453179 -42333276 + AluSx SINE Alu 1 300 -12 679 261 233 3 chr12 101453887 101454213 -42332242 + LTR50 LTR ERVL 6 406 -389 3720 176 68 70 chr12 101454349 101454952 -42331503 + L1MB4 LINE L1 4039 4641 -1539 514 144 22 33 chr12 101454952 101455042 -42331413 + FRAM SINE Alu 76 164 -12 3720 176 68 70 chr12 101455042 101456378 -42330077 + L1MB4 LINE L1 4641 6179 -1 451 234 47 35 chr12 101456550 101456721 -42329734 + L1MCc LINE L1 31 203 -6220 286 224 92 0 chr12 101457367 101457465 -42328990 + L1MCc LINE L1 1273 1379 -5044 926 178 169 78 chr12 101458034 101458394 -42328061 - Charlie1a DNA MER1_type -1061 394 2 266 268 0 93 chr12 101458784 101458881 -42327574 - MIR3 SINE MIR -30 178 91 902 247 144 78 chr12 101459054 101459280 -42327175 + L2 LINE L2 2365 2575 -738 1642 186 3 24 chr12 101459280 101459576 -42326879 + AluJo SINE Alu 3 292 -20 902 247 144 78 chr12 101459576 101460079 -42326376 + L2 LINE L2 2575 3173 -140 2256 98 0 13 chr12 101460079 101460385 -42326070 - AluSc SINE Alu -6 303 2 902 247 144 78 chr12 101460385 101460536 -42325919 + L2 LINE L2 3173 3313 0 195 313 12 48 chr12 101460692 101460775 -42325680 - L2 LINE L2 0 3272 3193 1470 179 99 4 chr12 101460982 101461245 -42325210 - AluJb SINE Alu -18 294 7 1741 153 37 10 chr12 101461860 101462154 -42324301 + AluJo SINE Alu 1 302 -10 771 250 69 26 chr12 101462488 101462792 -42323663 + L1ME3A LINE L1 5629 5945 -225 234 0 0 0 chr12 101463051 101463077 -42323378 + (A)n Simple_repeat Simple_repeat 1 26 0 1973 112 3 18 chr12 101463221 101463507 -42322948 + AluSx SINE Alu 1 282 -30 270 0 0 0 chr12 101463516 101463546 -42322909 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 739 276 141 31 chr12 101464015 101464305 -42322150 - MLT1I LTR MaLR -48 361 40 978 181 131 8 chr12 101465525 101465784 -42320671 - LTR50 LTR ERVL 0 795 505 2361 87 0 0 chr12 101466220 101466506 -42319949 - AluSg SINE Alu -24 286 1 1649 182 4 4 chr12 101466739 101467019 -42319436 - AluJb SINE Alu -30 282 3 2123 108 34 7 chr12 101467092 101467389 -42319066 - AluSg SINE Alu -5 305 1 343 306 164 31 chr12 101467632 101467949 -42318506 + L2 LINE L2 2178 2536 -778 245 232 61 61 chr12 101468107 101468189 -42318266 - L2 LINE L2 -1 3271 3190 2237 104 3 3 chr12 101468881 101469180 -42317275 + AluSx SINE Alu 1 299 -13 484 251 43 37 chr12 101469349 101469512 -42316943 - MER103 DNA DNA 0 166 3 748 217 61 28 chr12 101469702 101469882 -42316573 + MER5A DNA MER1_type 4 189 0 235 0 0 54 chr12 101470927 101470964 -42315491 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2077 89 4 7 chr12 101470967 101471238 -42315217 - AluSx SINE Alu -26 286 17 1812 161 26 0 chr12 101471401 101471705 -42314750 - AluSx SINE Alu 0 312 1 2457 90 3 0 chr12 101471715 101472025 -42314430 - AluSp SINE Alu -2 311 1 2375 92 0 3 chr12 101472034 101472337 -42314118 - AluSp SINE Alu -10 303 2 301 305 175 0 chr12 101472800 101472954 -42313501 + MIR SINE MIR 28 208 -54 299 216 113 92 chr12 101472956 101473049 -42313406 - MLT1K LTR MaLR 0 588 498 2281 107 0 3 chr12 101473049 101473348 -42313107 + AluSx SINE Alu 1 298 -14 299 216 113 92 chr12 101473348 101473439 -42313016 - MLT1K LTR MaLR -90 498 400 2124 112 10 14 chr12 101473734 101474028 -42312427 - AluSx SINE Alu -19 293 1 863 138 35 69 chr12 101474029 101474203 -42312252 + MER21A-int LTR ERV1 3970 4137 -54 326 162 73 0 chr12 101474233 101474301 -42312154 + MER21A-int LTR ERV1 4119 4191 0 536 141 0 12 chr12 101474301 101474386 -42312069 + MER21A LTR ERV1 1 84 -847 2109 125 3 0 chr12 101474388 101474683 -42311772 - AluSx SINE Alu -16 296 1 1815 108 115 11 chr12 101475125 101475404 -42311051 + AluSg SINE Alu 1 308 -2 1857 153 27 0 chr12 101475414 101475715 -42310740 + AluSx SINE Alu 1 309 -3 1476 201 95 22 chr12 101475767 101476136 -42310319 + L1ME1 LINE L1 5752 6147 -19 2265 101 3 7 chr12 101476378 101476676 -42309779 - AluSc SINE Alu -12 297 1 195 42 0 0 chr12 101477295 101477319 -42309136 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1786 190 3 0 chr12 101477529 101477829 -42308626 + AluJo SINE Alu 1 301 -11 480 322 104 10 chr12 101477837 101478039 -42308416 + MIR SINE MIR 35 255 -7 2105 110 3 7 chr12 101478530 101478820 -42307635 - AluSx SINE Alu -23 289 1 247 303 109 42 chr12 101478855 101478974 -42307481 - L2 LINE L2 -4 3309 3183 24 0 0 0 chr12 101479687 101479711 -42306744 + AT_rich Low_complexity Low_complexity 1 24 0 227 324 37 0 chr12 101479781 101479889 -42306566 - L1ME4a LINE L1 -69 6052 5941 472 284 45 22 chr12 101480708 101480842 -42305613 + MIR SINE MIR 47 183 -79 2339 104 0 13 chr12 101481047 101481363 -42305092 + AluSx SINE Alu 1 312 0 237 119 0 0 chr12 101481899 101481941 -42304514 + (GTTTG)n Simple_repeat Simple_repeat 3 44 0 344 323 21 0 chr12 101482050 101482146 -42304309 + MIR SINE MIR 48 145 -117 1774 167 17 0 chr12 101482152 101482439 -42304016 - AluJo SINE Alu -20 292 1 431 286 105 41 chr12 101483405 101483699 -42302756 - Charlie4 DNA MER1_type -1105 856 544 974 76 46 0 chr12 101484435 101484566 -42301889 - AluSg/x SINE Alu -11 299 163 810 162 0 28 chr12 101484623 101484765 -42301690 + FRAM SINE Alu 38 175 -1 1125 131 0 25 chr12 101484818 101484978 -42301477 - AluSq SINE Alu -157 156 1 1300 98 0 0 chr12 101485041 101485205 -42301250 + AluSp SINE Alu 131 294 -19 214 246 46 31 chr12 101485257 101485322 -42301133 - L2 LINE L2 -6 3307 3242 2206 109 3 10 chr12 101485444 101485748 -42300707 - AluSq SINE Alu -11 302 1 747 260 33 6 chr12 101486008 101486189 -42300266 - MIR SINE MIR -70 192 7 867 219 6 6 chr12 101486515 101486679 -42299776 + FRAM SINE Alu 3 166 0 918 117 0 0 chr12 101486800 101486920 -42299535 - FLAM_C SINE Alu -23 120 1 221 185 54 120 chr12 101486941 101487033 -42299422 + L2 LINE L2 3186 3271 -1 2144 112 0 26 chr12 101487876 101487984 -42298471 + AluSx SINE Alu 1 110 -202 2400 99 108 6 chr12 101487984 101488326 -42298129 - MER51B LTR ERV1 0 377 1 2144 112 0 26 chr12 101488326 101488520 -42297935 + AluSx SINE Alu 110 295 -17 1762 109 0 28 chr12 101488614 101488862 -42297593 + AluSx SINE Alu 63 303 -9 393 22 0 0 chr12 101488961 101489007 -42297448 + (TA)n Simple_repeat Simple_repeat 2 47 0 548 172 343 6 chr12 101489065 101489234 -42297221 + MIR SINE MIR 3 228 -34 275 362 39 24 chr12 101489672 101489799 -42296656 - L2 LINE L2 -8 3264 3136 2514 81 0 0 chr12 101489825 101490135 -42296320 + AluSg SINE Alu 1 310 0 992 298 63 25 chr12 101490225 101490621 -42295834 + L2 LINE L2 2898 3308 -5 207 348 0 76 chr12 101490691 101490809 -42295646 - L2 LINE L2 -273 2999 2891 2232 118 3 0 chr12 101491131 101491428 -42295027 - AluSq SINE Alu -15 298 1 283 317 202 0 chr12 101491604 101491708 -42294747 + L2 LINE L2 3141 3265 -7 2216 107 0 13 chr12 101491764 101492063 -42294392 + AluSx SINE Alu 1 295 -17 290 317 10 0 chr12 101492506 101492610 -42293845 + L2 LINE L2 1893 1997 -1317 2003 119 5 109 chr12 101492626 101492708 -42293747 - L1MB3 LINE L1 -47 6136 6047 1562 174 15 64 chr12 101492708 101493036 -42293419 - AluJo SINE Alu 0 312 1 2003 119 5 109 chr12 101493036 101493174 -42293281 - L1MB3 LINE L1 -136 6047 5896 2182 134 0 0 chr12 101493174 101493487 -42292968 - AluSq SINE Alu 0 313 1 2003 119 5 109 chr12 101493487 101493639 -42292816 - L1MB3 LINE L1 -287 5896 5807 2244 103 23 0 chr12 101493639 101493940 -42292515 + AluSq SINE Alu 1 308 -5 2003 119 5 109 chr12 101493940 101493978 -42292477 - L1MB3 LINE L1 -376 5807 5767 351 318 71 24 chr12 101493980 101494235 -42292220 + L2 LINE L2 1985 2251 -1063 384 280 0 17 chr12 101494250 101494368 -42292087 - 7SK RNA RNA -77 116 1 496 125 0 28 chr12 101495082 101495148 -42291307 + AluS SINE Alu 4 67 -244 560 244 106 0 chr12 101495148 101495271 -42291184 + FLAM_A SINE Alu 1 136 -6 1107 107 75 0 chr12 101495502 101495708 -42290747 + AluSg/x SINE Alu 110 327 0 279 196 33 65 chr12 101496149 101496241 -42290214 - MIR SINE MIR -6 256 168 842 148 16 0 chr12 101496253 101496375 -42290080 + AluJo SINE Alu 13 136 -176 365 318 36 0 chr12 101496380 101496490 -42289965 - MIR SINE MIR -120 142 29 431 281 62 0 chr12 101497040 101497168 -42289287 - MLT1L LTR MaLR -301 314 179 1661 164 85 0 chr12 101497260 101497366 -42289089 + AluJo SINE Alu 2 98 -214 252 0 0 0 chr12 101497366 101497394 -42289061 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1661 164 85 0 chr12 101497394 101497568 -42288887 + AluJo SINE Alu 98 306 -6 943 185 60 53 chr12 101497627 101497755 -42288700 - MER21A LTR ERV1 -422 441 315 2035 125 10 3 chr12 101497755 101498052 -42288403 - AluSq SINE Alu -14 299 1 943 185 60 53 chr12 101498052 101498273 -42288182 - MER21A LTR ERV1 -548 315 68 1559 100 14 5 chr12 101498274 101498494 -42287961 + AluSx SINE Alu 1 222 -90 4691 88 33 32 chr12 101498494 101498826 -42287629 + PABL_A LTR ERV1 1 331 -329 2157 123 0 3 chr12 101498826 101499128 -42287327 + AluSg SINE Alu 1 301 -9 825 191 83 6 chr12 101499131 101499288 -42287167 + FAM SINE Alu 1 169 -6 4691 88 33 32 chr12 101499288 101499610 -42286845 + PABL_A LTR ERV1 332 660 0 719 67 0 0 chr12 101499610 101499700 -42286755 + AluSp/q SINE Alu 219 308 -5 557 107 0 0 chr12 101499700 101499775 -42286680 - MER21A LTR ERV1 -856 75 1 326 162 73 0 chr12 101499775 101499843 -42286612 - MER21A-int LTR ERV1 0 4191 4119 863 144 35 69 chr12 101499873 101500047 -42286408 - MER21A-int LTR ERV1 -54 4137 3970 2292 105 10 13 chr12 101500048 101500361 -42286094 + AluSx SINE Alu 1 312 0 2107 111 34 0 chr12 101500361 101500659 -42285796 + AluSp SINE Alu 1 308 -5 2153 135 0 3 chr12 101500786 101501098 -42285357 - AluSq SINE Alu -2 311 1 1747 164 14 7 chr12 101501591 101501877 -42284578 + AluJb SINE Alu 3 290 -22 1498 125 14 5 chr12 101502105 101502321 -42284134 + AluSc SINE Alu 1 218 -91 210 355 0 0 chr12 101502436 101502512 -42283943 + T-rich Low_complexity Low_complexity 1 76 0 225 83 0 0 chr12 101502531 101502567 -42283888 + (T)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr12 101502658 101502685 -42283770 + (T)n Simple_repeat Simple_repeat 1 27 0 24552 48 2 0 chr12 101503305 101507098 -42279357 + L1PA2 LINE L1 2374 6154 -1 619 238 168 16 chr12 101507222 101507466 -42278989 + MER63C DNA MER1_type 244 524 -406 321 170 0 0 chr12 101507487 101507540 -42278915 + MER58 DNA MER1_type 44 96 -119 22 0 0 0 chr12 101507762 101507784 -42278671 + AT_rich Low_complexity Low_complexity 1 22 0 2367 76 3 0 chr12 101508273 101508564 -42277891 + AluSp SINE Alu 1 292 -21 1961 147 7 0 chr12 101508848 101509127 -42277328 + AluSx SINE Alu 1 282 -25 201 39 0 0 chr12 101509127 101509153 -42277302 + (CA)n Simple_repeat Simple_repeat 1 26 0 1537 193 0 64 chr12 101509368 101509679 -42276776 + AluJo SINE Alu 1 291 -21 2049 116 7 14 chr12 101509706 101509991 -42276464 + AluSx SINE Alu 1 305 -7 325 0 0 0 chr12 101509991 101510027 -42276428 + (TAA)n Simple_repeat Simple_repeat 2 180 0 258 323 88 62 chr12 101510177 101510650 -42275805 + L2 LINE L2 2589 3084 -188 1607 214 63 62 chr12 101510803 101511510 -42274945 + L1ME3A LINE L1 5213 5920 -250 24 0 0 0 chr12 101511581 101511605 -42274850 + AT_rich Low_complexity Low_complexity 1 24 0 570 266 13 49 chr12 101511771 101511997 -42274458 + L1ME3A LINE L1 5941 6158 -12 1324 131 8 14 chr12 101513300 101513552 -42272903 + AluJb SINE Alu 1 298 -14 441 295 39 0 chr12 101515004 101515133 -42271322 - MIR SINE MIR -55 153 20 921 151 62 0 chr12 101515465 101515611 -42270844 - AluJb SINE Alu -20 292 138 230 81 27 0 chr12 101515611 101515648 -42270807 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 779 37 102 0 chr12 101515695 101515803 -42270652 - MER85 DNA T2_type 0 139 21 437 181 14 0 chr12 101515803 101515875 -42270580 - AluS SINE Alu -240 73 1 337 378 138 12 chr12 101516008 101516328 -42270127 + L2 LINE L2 2897 3256 -16 21 82 0 0 chr12 101516428 101516477 -42269978 + AT_rich Low_complexity Low_complexity 1 49 0 523 313 68 23 chr12 101516894 101517201 -42269254 + L1MEd LINE L1 69 389 -5730 18001 49 58 3 chr12 101517202 101519664 -42266791 + L1P LINE L1 1 2597 -3549 1759 38 0 25 chr12 101519764 101520003 -42266452 + L1PA2 LINE L1 5922 6154 -1 505 238 168 16 chr12 101520127 101520371 -42266084 + MER63C DNA MER1_type 244 524 -406 571 171 150 29 chr12 101520392 101520532 -42265923 + MER58C DNA MER1_type 44 200 -15 1718 216 48 0 chr12 101520548 101520941 -42265514 + MER63C DNA MER1_type 519 930 0 356 280 37 46 chr12 101520941 101521159 -42265296 + L1MEd LINE L1 623 838 -5281 1792 140 0 83 chr12 101521182 101521518 -42264937 + AluJb SINE Alu 1 308 -4 2276 116 3 0 chr12 101522517 101522819 -42263636 + AluSx SINE Alu 1 303 -9 1016 193 0 0 chr12 101523908 101524074 -42262381 + FRAM SINE Alu 1 165 -11 723 310 59 40 chr12 101524250 101524604 -42261851 - L2 LINE L2 -25 3288 2902 1028 193 16 5 chr12 101524604 101524791 -42261664 - MER5A DNA MER1_type 0 189 1 723 310 59 40 chr12 101524791 101525012 -42261443 - L2 LINE L2 -411 2902 2687 425 243 83 14 chr12 101525012 101525156 -42261299 + L1MD2 LINE L1 5980 6133 -226 243 261 90 45 chr12 101525172 101525306 -42261149 + L1MD2 LINE L1 6201 6340 -19 542 343 72 0 chr12 101525307 101525488 -42260967 - L2 LINE L2 -609 2705 2512 1790 163 13 10 chr12 101525578 101525878 -42260577 - AluJb SINE Alu -11 301 1 3642 127 15 2 chr12 101525978 101526498 -42259957 + MER1A DNA MER1_type 1 527 0 806 311 84 7 chr12 101526601 101526910 -42259545 - L2 LINE L2 -829 2485 2153 1716 120 62 28 chr12 101527028 101527352 -42259103 + L1MB3 LINE L1 5847 6181 -2 2555 166 72 14 chr12 101528390 101528949 -42257506 - L1MB5 LINE L1 0 6174 5584 1877 130 20 23 chr12 101528975 101529275 -42257180 - AluSx SINE Alu -13 299 1 409 193 57 0 chr12 101529950 101530038 -42256417 + Tigger3(Golem) DNA MER2_type 3 95 -2934 215 185 54 120 chr12 101531259 101531351 -42255104 - L2 LINE L2 -1 3271 3186 1794 140 0 83 chr12 101531372 101531708 -42254747 + AluJb SINE Alu 1 308 -4 2276 116 3 0 chr12 101532707 101533009 -42253446 + AluSx SINE Alu 1 303 -9 19056 33 1 0 chr12 101534007 101536435 -42250020 + L1P LINE L1 1465 3895 -2251 628 188 21 62 chr12 101536741 101536885 -42249570 + Tigger3(Golem) DNA MER2_type 3 140 -2889 1378 167 45 0 chr12 101536886 101537131 -42249324 + Tigger3(Golem) DNA MER2_type 2783 3038 0 2192 95 7 30 chr12 101538201 101538506 -42247949 + AluSx SINE Alu 1 298 -14 245 262 119 36 chr12 101538573 101538657 -42247798 + MIR SINE MIR 28 118 -90 180 317 89 65 chr12 101538663 101538786 -42247669 - MIR SINE MIR -128 134 9 282 283 124 9 chr12 101540339 101540452 -42246003 - MIR SINE MIR -89 173 48 505 236 57 0 chr12 101540472 101540612 -42245843 + MER104 DNA Tc2 33 180 0 25 63 0 38 chr12 101540948 101540998 -42245457 + AT_rich Low_complexity Low_complexity 1 48 -28 1494 205 7 17 chr12 101540998 101541286 -42245169 + AluJo SINE Alu 1 285 -27 25 63 0 38 chr12 101541286 101541314 -42245141 + AT_rich Low_complexity Low_complexity 48 76 0 445 257 12 0 chr12 101541488 101541652 -42244803 - L1MEd LINE L1 -5103 1293 1137 22 0 0 0 chr12 101541884 101541906 -42244549 + AT_rich Low_complexity Low_complexity 1 22 0 2321 224 47 74 chr12 101542646 101543268 -42243187 + MER77 LTR ERV1 1 605 0 1035 131 0 0 chr12 101543372 101543509 -42242946 - AluSq/x SINE Alu -176 137 1 875 144 37 56 chr12 101543596 101543811 -42242644 - L1MB3 LINE L1 0 6183 5973 565 209 56 103 chr12 101544066 101544168 -42242287 + MER33 DNA MER1_type 1 106 -2479 934 140 37 51 chr12 101544168 101544382 -42242073 + L1MB3 LINE L1 5973 6183 0 565 209 56 103 chr12 101544382 101544466 -42241989 + MER33 DNA MER1_type 106 192 -2393 1948 141 25 0 chr12 101544466 101544743 -42241712 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr12 101544753 101544773 -42241682 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 565 209 56 103 chr12 101544773 101544914 -42241541 + MER33 DNA MER1_type 201 324 0 21 82 0 0 chr12 101545934 101545983 -42240472 + AT_rich Low_complexity Low_complexity 1 49 0 1615 132 80 24 chr12 101547162 101547449 -42239006 + AluSx SINE Alu 4 306 -6 43 38 0 25 chr12 101547456 101547509 -42238946 + AT_rich Low_complexity Low_complexity 1 53 -24 2099 124 3 0 chr12 101547509 101547800 -42238655 - AluSg SINE Alu -18 292 1 43 38 0 25 chr12 101547800 101547825 -42238630 + AT_rich Low_complexity Low_complexity 53 77 0 268 333 161 6 chr12 101548037 101548199 -42238256 + MIR SINE MIR 42 228 -34 985 198 58 77 chr12 101548241 101548619 -42237836 + MLT1A2 LTR MaLR 1 371 -3 203 0 0 36 chr12 101549387 101549415 -42237040 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 31 26 0 0 chr12 101549899 101549937 -42236518 + AT_rich Low_complexity Low_complexity 1 38 0 234 116 0 0 chr12 101553212 101553255 -42233200 + (CGGGGG)n Simple_repeat Simple_repeat 5 47 0 730 180 0 0 chr12 101554839 101554967 -42231488 + AluSg/x SINE Alu 169 296 -14 2288 98 0 7 chr12 101555011 101555317 -42231138 - AluSq SINE Alu -7 306 3 234 0 0 0 chr12 101555382 101555408 -42231047 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 570 185 8 34 chr12 101555411 101555530 -42230925 - FLAM_C SINE Alu -27 116 1 1306 175 5 0 chr12 101555561 101555784 -42230671 - AluSx SINE Alu -31 281 58 1764 138 24 0 chr12 101556390 101556680 -42229775 - L1PA15 LINE L1 -2 6163 5867 202 277 21 0 chr12 101556773 101556820 -42229635 + L2 LINE L2 3008 3055 -258 252 86 0 0 chr12 101556859 101556894 -42229561 + (CA)n Simple_repeat Simple_repeat 1 35 0 1202 127 0 0 chr12 101557950 101558108 -42228347 + AluSg/x SINE Alu 122 279 -33 216 0 0 0 chr12 101558110 101558134 -42228321 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2144 106 10 3 chr12 101558232 101558524 -42227931 + AluSp SINE Alu 1 294 -19 331 331 93 55 chr12 101558684 101559050 -42227405 + L1M4c LINE L1 32 411 -5973 3658 232 115 13 chr12 101559146 101560385 -42226070 + L1M4c LINE L1 580 1691 -4691 5401 81 11 1 chr12 101560385 101561118 -42225337 - L1PA10 LINE L1 -16 6152 5413 3658 232 115 13 chr12 101561118 101561591 -42224864 + L1M4c LINE L1 1691 2114 -4268 1880 135 24 17 chr12 101561591 101561720 -42224735 + AluSq SINE Alu 1 128 -185 2189 99 0 3 chr12 101561720 101562027 -42224428 + AluSg SINE Alu 1 306 0 1880 135 24 17 chr12 101562027 101562184 -42224271 + AluSq SINE Alu 128 290 -23 2130 137 0 0 chr12 101562184 101562484 -42223971 + AluSc SINE Alu 1 300 -9 3658 232 115 13 chr12 101562484 101562773 -42223682 + L1M4c LINE L1 2113 2787 -3595 1056 198 22 8 chr12 101562873 101563124 -42223331 + L1MC3 LINE L1 7528 7984 -11 1782 152 3 20 chr12 101563337 101563633 -42222822 - AluJo SINE Alu -21 291 1 325 374 32 0 chr12 101563680 101563803 -42222652 - L2 LINE L2 -2010 1304 1178 747 199 0 29 chr12 101563897 101564033 -42222422 + FLAM_C SINE Alu 2 133 -10 2375 103 0 6 chr12 101564669 101564981 -42221474 + AluSg SINE Alu 1 310 0 914 127 8 22 chr12 101565342 101565476 -42220979 + FLAM_C SINE Alu 2 133 0 22 0 0 0 chr12 101566235 101566257 -42220198 + AT_rich Low_complexity Low_complexity 1 22 0 1565 163 43 46 chr12 101566417 101566743 -42219712 - MER44D DNA MER2_type -8 601 7 2389 94 0 0 chr12 101566814 101567113 -42219342 + AluSc SINE Alu 1 299 -10 291 164 18 0 chr12 101567798 101567853 -42218602 + L1MC3 LINE L1 7507 7562 -223 1326 167 20 53 chr12 101568032 101568331 -42218124 - AluSq SINE Alu -14 289 1 21 82 0 0 chr12 101569365 101569414 -42217041 + AT_rich Low_complexity Low_complexity 1 49 0 268 203 0 62 chr12 101569788 101569852 -42216603 + L1ME LINE L1 5601 5660 -461 4668 221 89 13 chr12 101569928 101571142 -42215313 + L1P LINE L1 3322 4627 -1519 596 184 10 0 chr12 101571251 101571354 -42215101 - MER2 DNA MER2_type -241 104 1 2037 127 0 0 chr12 101572756 101573101 -42213354 + AluSx SINE Alu 1 345 0 1263 123 6 0 chr12 101573628 101573935 -42212520 + AluSg/x SINE Alu 131 438 0 1634 159 20 41 chr12 101573985 101574280 -42212175 + AluJo SINE Alu 2 290 -22 209 32 0 32 chr12 101574282 101574313 -42212142 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 221 254 15 30 chr12 101574471 101574538 -42211917 + L2 LINE L2 3248 3313 0 2396 80 0 3 chr12 101574808 101575107 -42211348 - AluSq SINE Alu -15 298 1 216 0 0 0 chr12 101575123 101575147 -42211308 + (A)n Simple_repeat Simple_repeat 1 24 0 4198 105 46 82 chr12 101575207 101576014 -42210441 - LTR1 LTR ERV1 -7 778 1 1809 125 8 0 chr12 101576014 101576278 -42210177 + AluSq SINE Alu 31 296 -17 258 220 275 0 chr12 101576279 101576370 -42210085 + MIR SINE MIR 24 139 -123 372 348 7 7 chr12 101576375 101576530 -42209925 - HERV16 LTR ERVL -3785 1211 1057 1676 118 115 14 chr12 101577222 101577501 -42208954 - AluSg1 SINE Alu -2 307 1 2063 121 4 0 chr12 101577943 101578256 -42208199 + AluSx SINE Alu 1 314 0 729 211 0 0 chr12 101578271 101578385 -42208070 + FLAM_A SINE Alu 2 115 -18 419 303 48 7 chr12 101578588 101578733 -42207722 + MLT1J LTR MaLR 290 440 -71 2220 109 3 3 chr12 101578738 101579041 -42207414 + AluSc SINE Alu 1 303 -6 2221 113 3 0 chr12 101579164 101579464 -42206991 + AluSq SINE Alu 1 301 -12 326 295 24 77 chr12 101579513 101579605 -42206850 + L1MC4a LINE L1 5649 5628 -538 2417 87 3 0 chr12 101579605 101579904 -42206551 + AluSp SINE Alu 3 302 -11 326 295 24 77 chr12 101579904 101580090 -42206365 + L1MC4a LINE L1 5627 5821 -345 722 47 0 0 chr12 101580320 101580406 -42206049 - L1PA12 LINE L1 0 6168 6083 22 35 0 0 chr12 101580433 101580462 -42205993 + AT_rich Low_complexity Low_complexity 1 29 0 1824 145 31 10 chr12 101580472 101580754 -42205701 + AluSx SINE Alu 1 291 -21 671 64 0 11 chr12 101580754 101580848 -42205607 + (GGGGA)n Simple_repeat Simple_repeat 5 97 0 4213 244 49 50 chr12 101580890 101581473 -42204982 + L1 LINE L1 2633 3215 -2931 1917 122 4 0 chr12 101581473 101581744 -42204711 + AluSx SINE Alu 41 312 0 4213 244 49 50 chr12 101581744 101582361 -42204094 + L1 LINE L1 3215 3834 -2312 2176 115 3 0 chr12 101582361 101582657 -42203798 + AluSq SINE Alu 1 297 -16 4213 244 49 50 chr12 101582657 101582969 -42203486 + L1 LINE L1 3834 4145 -2001 2120 131 3 0 chr12 101583306 101583604 -42202851 - AluSx SINE Alu -13 299 1 582 283 127 28 chr12 101583846 101584364 -42202091 - MLT1L LTR MaLR -9 606 6 2114 118 26 3 chr12 101585166 101585472 -42200983 - AluSq SINE Alu 0 313 1 1404 174 44 7 chr12 101585591 101585866 -42200589 - AluJo SINE Alu -27 285 1 235 321 115 18 chr12 101586194 101586359 -42200096 + L2 LINE L2 2853 3033 -239 1347 78 11 0 chr12 101586908 101587087 -42199368 + AluY SINE Alu 129 309 -2 630 249 209 51 chr12 101587135 101587379 -42199076 + L1MC4a LINE L1 5337 5541 -2267 1445 194 53 39 chr12 101587379 101587520 -42198935 - AluJo SINE Alu -22 290 152 2279 120 0 0 chr12 101587520 101587828 -42198627 - AluSq SINE Alu -5 308 1 1445 194 53 39 chr12 101587828 101587970 -42198485 - AluJo SINE Alu -160 152 3 630 249 209 51 chr12 101587970 101588099 -42198356 + L1MC4a LINE L1 5541 5769 -2039 * 4409 44 1 2 chr12 101588084 101588804 -42197651 - L1PA5 LINE L1 -582 5572 4854 5090 45 0 0 chr12 101588804 101589355 -42197100 + L1PA5 LINE L1 5579 6150 -4 362 329 34 0 chr12 101589356 101589502 -42196953 + L1MC4a LINE L1 5745 5895 -1913 1998 135 84 28 chr12 101589539 101589894 -42196561 + THE1C LTR MaLR 1 375 0 2391 87 10 0 chr12 101590077 101590386 -42196069 + AluSp SINE Alu 1 312 -1 2267 103 0 7 chr12 101590924 101591260 -42195195 - AluSx SINE Alu 0 312 1 1034 192 0 0 chr12 101591271 101591443 -42195012 - L1MC1 LINE L1 -2 6331 6160 2416 75 10 0 chr12 101591874 101592180 -42194275 + AluSq SINE Alu 1 309 -4 2206 110 0 3 chr12 101592429 101592721 -42193734 + AluSq SINE Alu 2 292 -21 1783 158 0 42 chr12 101592891 101593202 -42193253 + AluJb SINE Alu 6 303 -9 2236 124 0 0 chr12 101594618 101594925 -42191530 - AluSx SINE Alu -5 307 1 225 0 0 0 chr12 101595167 101595192 -42191263 + (T)n Simple_repeat Simple_repeat 1 25 0 2210 109 0 0 chr12 101595591 101595884 -42190571 - AluSx SINE Alu -19 293 1 434 235 0 34 chr12 101596034 101596153 -42190302 + LTR16A LTR ERVL 336 450 0 2427 85 0 0 chr12 101596344 101596651 -42189804 - AluSx SINE Alu -5 307 1 2170 137 0 3 chr12 101596923 101597230 -42189225 - AluSx SINE Alu -1 311 6 10164 180 31 21 chr12 101597371 101597566 -42188889 + L1PA16 LINE L1 3036 3227 -2939 1861 118 14 14 chr12 101597566 101597853 -42188602 + AluSx SINE Alu 1 287 -25 10164 180 31 21 chr12 101597853 101597864 -42188591 + L1PA16 LINE L1 3227 3236 -2930 2455 57 0 10 chr12 101597864 101598160 -42188295 + AluY SINE Alu 1 293 -18 180 0 0 0 chr12 101598163 101598183 -42188272 + (CAA)n Simple_repeat Simple_repeat 2 21 0 10164 180 31 21 chr12 101598183 101598638 -42187817 + L1PA16 LINE L1 3237 3686 -2480 213 94 0 0 chr12 101598638 101598670 -42187785 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 10164 180 31 21 chr12 101598670 101599364 -42187091 + L1PA16 LINE L1 3686 4371 -1795 390 21 0 0 chr12 101599364 101599411 -42187044 + (CA)n Simple_repeat Simple_repeat 2 48 0 10164 180 31 21 chr12 101599411 101600960 -42185495 + L1PA16 LINE L1 4371 5970 -196 2274 113 0 0 chr12 101600960 101601252 -42185203 + AluSq SINE Alu 1 292 -21 10164 180 31 21 chr12 101601252 101601356 -42185099 + L1PA16 LINE L1 5970 6071 -95 468 0 0 0 chr12 101601542 101601594 -42184861 + (TA)n Simple_repeat Simple_repeat 2 53 0 2277 105 19 3 chr12 101601686 101602001 -42184454 + L1PA14 LINE L1 5842 6161 0 25 31 0 0 chr12 101602460 101602492 -42183963 + AT_rich Low_complexity Low_complexity 1 32 0 2281 103 0 22 chr12 101602788 101603107 -42183348 - AluSx SINE Alu 0 312 1 510 270 64 56 chr12 101603119 101603476 -42182979 - MLT1J LTR MaLR -112 399 1 257 211 0 158 chr12 101603479 101603511 -42182944 - L1ME LINE L1 -411 5753 5718 2203 111 0 3 chr12 101603511 101603808 -42182647 - AluSg SINE Alu -10 300 5 257 211 0 158 chr12 101603808 101603870 -42182585 - L1ME LINE L1 -446 5718 5674 1276 135 0 76 chr12 101603984 101604221 -42182234 - AluJo SINE Alu -10 302 84 230 239 104 0 chr12 101604221 101604288 -42182167 - L1ME LINE L1 -564 5557 5484 404 300 143 14 chr12 101604345 101604625 -42181830 - L2 LINE L2 -1415 1899 1584 186 43 0 0 chr12 101604735 101604758 -42181697 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1576 181 0 0 chr12 101604784 101605038 -42181417 - AluJo SINE Alu -58 254 1 365 228 20 50 chr12 101605075 101605176 -42181279 - L2 LINE L2 -2 3270 3173 2274 98 3 0 chr12 101605643 101605938 -42180517 - AluSc SINE Alu -13 296 1 2441 96 0 0 chr12 101606189 101606502 -42179953 - AluSq SINE Alu 0 313 1 2571 52 0 7 chr12 101606516 101606822 -42179633 - AluY SINE Alu -7 304 1 1216 140 0 16 chr12 101606961 101607154 -42179301 - AluSg/x SINE Alu -3 307 118 2188 103 0 7 chr12 101607156 101607447 -42179008 - AluSx SINE Alu -23 289 1 1272 124 0 11 chr12 101607583 101607769 -42178686 - AluSg/x SINE Alu 0 312 129 2112 126 0 10 chr12 101607773 101608082 -42178373 - AluSg SINE Alu -4 306 1 351 279 58 77 chr12 101608528 101608736 -42177719 + MIR3 SINE MIR 4 207 -1 2175 164 70 43 chr12 101609128 101609177 -42177278 - MSTB LTR MaLR 0 426 380 1951 99 72 0 chr12 101609177 101609461 -42176994 - AluSx SINE Alu 0 303 1 2175 164 70 43 chr12 101609461 101609825 -42176630 - MSTB LTR MaLR -46 380 1 430 189 142 24 chr12 101609934 101610061 -42176394 + MIR SINE MIR 89 230 -32 544 235 17 0 chr12 101610494 101610613 -42175842 + MER94 DNA DNA 2 122 -12 317 331 8 16 chr12 101610808 101610935 -42175520 + HAL1 LINE L1 825 950 -1557 367 193 96 59 chr12 101611041 101611176 -42175279 + MER53 DNA DNA 1 140 -49 1450 166 106 7 chr12 101611182 101611466 -42174989 - AluJo SINE Alu 0 312 1 2301 108 0 0 chr12 101611679 101611974 -42174481 - AluSx SINE Alu -17 295 1 227 279 145 6 chr12 101611987 101612159 -42174296 + L1MC/D LINE L1 5633 5828 -1980 735 262 93 4 chr12 101612214 101612451 -42174004 - MIR SINE MIR -3 259 2 2562 50 0 25 chr12 101612548 101612866 -42173589 + AluY SINE Alu 1 310 -1 2242 92 3 0 chr12 101614234 101614518 -42171937 + AluSp SINE Alu 18 302 -11 472 248 8 26 chr12 101615282 101615399 -42171056 - L2 LINE L2 0 3313 3199 2347 108 0 0 chr12 101615509 101615814 -42170641 - AluSg SINE Alu -5 305 1 339 165 0 126 chr12 101616070 101616115 -42170340 - MIR SINE MIR -1 261 235 2157 121 3 0 chr12 101616115 101616413 -42170042 - AluSx SINE Alu -13 299 1 339 165 0 126 chr12 101616413 101616470 -42169985 - MIR SINE MIR -27 235 172 1365 261 10 3 chr12 101616530 101616913 -42169542 - L1MDa LINE L1 -2988 3552 3167 1863 133 0 14 chr12 101616913 101617198 -42169257 - AluSq SINE Alu 0 313 33 3166 218 215 13 chr12 101617198 101618611 -42167844 - L1MDa LINE L1 -4616 1924 92 2141 113 0 52 chr12 101618611 101618938 -42167517 - AluSg SINE Alu 0 310 1 3166 218 215 13 chr12 101618938 101619032 -42167423 - L1MDa LINE L1 -6448 92 18 841 227 124 44 chr12 101619042 101619457 -42166998 - LTR33A LTR ERVL -44 479 1 399 279 31 9 chr12 101619460 101619591 -42166864 - MIR SINE MIR -53 155 22 865 260 74 13 chr12 101619838 101620069 -42166386 - MIR SINE MIR -13 249 5 2231 99 20 0 chr12 101620303 101620597 -42165858 + AluSq SINE Alu 5 304 -9 1932 144 10 10 chr12 101620608 101620907 -42165548 + AluSx SINE Alu 1 299 -13 547 284 127 13 chr12 101621516 101621752 -42164703 - Charlie2 DNA MER1_type -2519 263 1 449 300 18 0 chr12 101621841 101621951 -42164504 - L2 LINE L2 -593 2721 2610 876 175 11 49 chr12 101621960 101622143 -42164312 + AluJb SINE Alu 137 312 0 1290 153 38 79 chr12 101622235 101622406 -42164049 - MER33 DNA MER1_type -2262 323 147 2412 81 0 16 chr12 101622406 101622716 -42163739 + AluSp SINE Alu 1 305 -8 378 0 0 0 chr12 101622716 101622758 -42163697 + (TA)n Simple_repeat Simple_repeat 2 43 0 1290 153 38 79 chr12 101622758 101622930 -42163525 - MER33 DNA MER1_type -2436 149 1 1890 95 0 15 chr12 101623123 101623385 -42163070 + AluSg SINE Alu 44 301 -9 562 265 18 16 chr12 101623659 101623951 -42162504 + MLT1I LTR MaLR 64 395 -14 3445 139 14 37 chr12 101624044 101624535 -42161920 - MER41D LTR ERV1 0 557 79 2603 43 0 0 chr12 101624535 101624836 -42161619 - AluY SINE Alu -10 301 1 3445 139 14 37 chr12 101624836 101624914 -42161541 - MER41D LTR ERV1 -478 79 1 27 49 0 0 chr12 101625042 101625083 -42161372 + AT_rich Low_complexity Low_complexity 1 41 0 1932 134 11 7 chr12 101625085 101625368 -42161087 + AluSx SINE Alu 5 288 -24 243 0 0 0 chr12 101625371 101625398 -42161057 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1893 168 10 0 chr12 101625951 101626255 -42160200 - AluJo SINE Alu -5 307 1 1960 144 0 0 chr12 101626605 101626883 -42159572 + AluSg SINE Alu 1 278 -32 283 240 107 33 chr12 101626908 101627058 -42159397 - L1ME4a LINE L1 -2 6119 5959 1044 84 23 0 chr12 101627069 101627200 -42159255 - AluSq/x SINE Alu -178 134 1 22 35 0 0 chr12 101627210 101627239 -42159216 + AT_rich Low_complexity Low_complexity 1 29 0 722 47 0 0 chr12 101627266 101627352 -42159103 + L1PA12 LINE L1 6083 6168 0 326 295 24 77 chr12 101627582 101627768 -42158687 - L1MC4a LINE L1 -345 5821 5744 2417 87 3 0 chr12 101627768 101628067 -42158388 - AluSp SINE Alu -11 302 3 326 295 24 77 chr12 101628067 101628159 -42158296 - L1MC4a LINE L1 -422 5744 5649 2221 113 3 0 chr12 101628208 101628508 -42157947 - AluSq SINE Alu -12 301 1 2220 109 3 3 chr12 101628631 101628934 -42157521 - AluSc SINE Alu -6 303 1 419 303 48 7 chr12 101628939 101629084 -42157371 - MLT1J LTR MaLR -71 440 290 729 211 0 0 chr12 101629287 101629401 -42157054 - FLAM_A SINE Alu -18 115 2 2062 121 4 0 chr12 101629416 101629729 -42156726 - AluSx SINE Alu 0 314 1 1676 118 115 14 chr12 101630171 101630450 -42156005 + AluSg1 SINE Alu 1 307 -2 372 348 7 7 chr12 101631142 101631297 -42155158 + HERV16 LTR ERVL 1057 1211 -3785 247 159 0 0 chr12 101631302 101631346 -42155109 - MIR SINE MIR -123 139 96 225 194 60 90 chr12 101631356 101631394 -42155061 - AluJ/FLAM SINE Alu -230 72 34 1809 125 8 0 chr12 101631394 101631658 -42154797 - AluSq SINE Alu -17 296 31 4425 116 44 82 chr12 101631658 101632474 -42153981 + LTR1 LTR ERV1 1 785 0 225 194 60 90 chr12 101632474 101632501 -42153954 - AluJ/FLAM SINE Alu -266 36 8 207 0 0 0 chr12 101632529 101632552 -42153903 + (T)n Simple_repeat Simple_repeat 1 23 0 2396 80 0 3 chr12 101632569 101632868 -42153587 + AluSq SINE Alu 1 298 -15 221 254 15 30 chr12 101633139 101633206 -42153249 - L2 LINE L2 0 3313 3248 209 32 0 32 chr12 101633364 101633395 -42153060 + (TCCCC)n Simple_repeat Simple_repeat 4 33 0 1716 155 17 40 chr12 101633397 101633693 -42152762 - AluJo SINE Alu -22 290 2 1262 123 6 0 chr12 101633743 101634050 -42152405 - AluSg/x SINE Alu 0 440 133 2036 127 0 0 chr12 101634577 101634922 -42151533 - AluSx SINE Alu 0 345 1 1425 192 121 0 chr12 101636324 101636631 -42149824 + MER2 DNA MER2_type 1 344 0 598 241 42 72 chr12 101636707 101636943 -42149512 + MIR SINE MIR 2 230 -32 1377 111 0 0 chr12 101638195 101638384 -42148071 + AluSg/x SINE Alu 122 310 -2 1556 260 82 36 chr12 101638397 101638638 -42147817 - L2 LINE L2 0 3313 3084 846 200 25 6 chr12 101638638 101638798 -42147657 - FRAM SINE Alu -3 163 1 1556 260 82 36 chr12 101638798 101639392 -42147063 - L2 LINE L2 -229 3084 1925 2062 133 0 0 chr12 101639424 101639724 -42146731 - AluSx SINE Alu -12 300 1 642 299 263 12 chr12 101639764 101640357 -42146098 + L2 LINE L2 2555 3309 -4 2226 110 0 7 chr12 101640375 101640674 -42145781 + AluSx SINE Alu 1 297 -15 544 261 22 22 chr12 101640842 101640980 -42145475 - L2 LINE L2 -1 3271 3134 481 279 36 0 chr12 101641029 101641140 -42145315 - L2 LINE L2 -22 3250 3136 2044 92 32 11 chr12 101641190 101641494 -42144961 + AluSg SINE Alu 1 310 0 376 316 144 39 chr12 101641686 101641972 -42144483 - L2 LINE L2 -238 3034 2693 2334 92 7 0 chr12 101641972 101642265 -42144190 - AluSx SINE Alu -17 295 1 376 316 144 39 chr12 101642265 101642343 -42144112 - L2 LINE L2 -579 2693 2625 2214 93 0 0 chr12 101642386 101642684 -42143771 - AluSc SINE Alu 0 303 6 684 67 0 0 chr12 101642890 101642980 -42143475 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1688 151 3 46 chr12 101642980 101643285 -42143170 - AluSx SINE Alu -20 292 1 1364 196 45 84 chr12 101643992 101644392 -42142063 - MLT1B LTR MaLR 0 390 10 409 252 31 31 chr12 101644709 101644836 -42141619 - L2 LINE L2 0 3313 3187 201 270 68 0 chr12 101644877 101644951 -42141504 + MIR SINE MIR 113 191 -71 1352 199 40 17 chr12 101644962 101645158 -42141297 + L1M4 LINE L1 4650 4857 -1289 3410 182 7 5 chr12 101645158 101645714 -42140741 + MER41D LTR ERV1 1 557 0 1352 199 40 17 chr12 101645714 101645813 -42140642 + L1M4 LINE L1 4857 4952 -1194 6750 141 18 44 chr12 101645851 101646037 -42140418 + L1MC1 LINE L1 4850 5039 -1294 2327 100 0 0 chr12 101646037 101646338 -42140117 + AluSc SINE Alu 1 301 -8 6750 141 18 44 chr12 101646338 101646630 -42139825 + L1MC1 LINE L1 5039 5337 -996 1857 125 36 32 chr12 101646630 101646942 -42139513 - AluSx SINE Alu 0 313 1 6750 141 18 44 chr12 101646942 101647328 -42139127 + L1MC1 LINE L1 5337 5731 -602 2146 102 0 3 chr12 101647328 101647656 -42138799 + AluSx SINE Alu 1 327 0 6750 141 18 44 chr12 101647656 101648292 -42138163 + L1MC1 LINE L1 5731 6333 0 189 244 0 0 chr12 101648294 101648335 -42138120 + MIR SINE MIR 198 238 -24 21 0 0 0 chr12 101649869 101649890 -42136565 + AT_rich Low_complexity Low_complexity 1 21 0 896 139 0 29 chr12 101649940 101650077 -42136378 + FLAM_C SINE Alu 1 133 0 660 193 20 21 chr12 101650648 101651116 -42135339 + CT-rich Low_complexity Low_complexity 1 467 0 253 264 11 55 chr12 101651317 101651408 -42135047 + MIR SINE MIR 149 235 -27 192 258 217 17 chr12 101651926 101652046 -42134409 - MIR SINE MIR -2 260 117 325 304 209 16 chr12 101652157 101652348 -42134107 - MIR SINE MIR -12 250 23 2179 118 20 0 chr12 101652592 101653025 -42133430 - AluSg SINE Alu 0 439 1 1934 112 0 0 chr12 101653165 101653423 -42133032 - AluSx SINE Alu -12 300 43 282 287 32 21 chr12 101653544 101653638 -42132817 + L2 LINE L2 3174 3268 -4 2550 47 3 0 chr12 101653720 101654018 -42132437 + AluY SINE Alu 1 299 -12 2355 113 0 0 chr12 101654212 101654549 -42131906 - AluSq SINE Alu 0 337 1 435 38 0 0 chr12 101655181 101655234 -42131221 + (CA)n Simple_repeat Simple_repeat 2 54 0 745 199 20 14 chr12 101655789 101655935 -42130520 - FRAM SINE Alu -7 169 23 2344 94 0 0 chr12 101655950 101656248 -42130207 - AluSx SINE Alu -14 298 1 23 33 0 0 chr12 101656252 101656282 -42130173 + AT_rich Low_complexity Low_complexity 1 30 0 454 307 39 38 chr12 101656478 101656663 -42129792 - L1ME LINE L1 -400 5766 5585 838 245 199 9 chr12 101656675 101657001 -42129454 - L2 LINE L2 0 3313 2926 2243 122 0 0 chr12 101657196 101657491 -42128964 + AluSx SINE Alu 1 295 -17 1955 120 81 0 chr12 101657658 101657941 -42128514 + AluSg SINE Alu 1 306 -4 2037 125 30 7 chr12 101658351 101658655 -42127800 + AluSx SINE Alu 1 311 -1 2060 139 3 0 chr12 101658978 101659280 -42127175 - AluSx SINE Alu -9 303 1 1255 108 6 0 chr12 101659280 101659446 -42127009 - AluSx SINE Alu -145 167 1 492 18 0 0 chr12 101659964 101660021 -42126434 + (TA)n Simple_repeat Simple_repeat 2 58 0 2137 107 4 0 chr12 101660021 101660302 -42126153 - AluSg SINE Alu -28 282 1 32 26 0 0 chr12 101660812 101660851 -42125604 + AT_rich Low_complexity Low_complexity 1 39 0 693 163 14 78 chr12 101661016 101661121 -42125334 - MER94 DNA DNA 0 134 39 2070 140 0 13 chr12 101661121 101661435 -42125020 + AluSx SINE Alu 1 310 -2 693 163 14 78 chr12 101661435 101661470 -42124985 - MER94 DNA DNA -95 39 3 2095 110 7 7 chr12 101662670 101662971 -42123484 - AluSq SINE Alu -12 301 1 490 250 59 102 chr12 101663449 101663574 -42122881 - MIR SINE MIR -1 261 149 2518 63 0 0 chr12 101663574 101663876 -42122579 - AluY SINE Alu -9 302 1 490 250 59 102 chr12 101663876 101663986 -42122469 - MIR SINE MIR -113 149 36 21 0 0 0 chr12 101664705 101664726 -42121729 + AT_rich Low_complexity Low_complexity 1 21 0 235 250 0 36 chr12 101664883 101664939 -42121516 + MIR SINE MIR 16 69 -139 476 333 110 60 chr12 101665183 101665703 -42120752 + L3 LINE CR1 843 1388 -189 420 289 116 8 chr12 101665758 101665879 -42120576 - MIR3 SINE MIR -63 145 12 2108 141 3 0 chr12 101666064 101666368 -42120087 + AluSx SINE Alu 1 305 -7 2264 114 0 3 chr12 101666762 101667059 -42119396 - AluSx SINE Alu -16 296 1 1358 128 41 0 chr12 101667307 101667549 -42118906 - L1MA7 LINE L1 0 6291 6040 589 175 0 0 chr12 101667675 101667778 -42118677 - AluJb SINE Alu 0 312 210 253 204 0 0 chr12 101667780 101667824 -42118631 - AluSc SINE Alu -126 173 130 1771 108 124 12 chr12 101667921 101668179 -42118276 + AluSg SINE Alu 1 287 -23 25 0 0 0 chr12 101668179 101668204 -42118251 + AT_rich Low_complexity Low_complexity 1 25 0 210 379 0 0 chr12 101668213 101668271 -42118184 - MER91A DNA MER1_type 0 196 139 528 352 19 0 chr12 101668302 101668464 -42117991 - MER91A DNA MER1_type -20 176 12 417 39 0 0 chr12 101669163 101669214 -42117241 + (TG)n Simple_repeat Simple_repeat 1 51 0 626 268 76 23 chr12 101670272 101670574 -42115881 - MLT1I LTR MaLR -8 401 84 204 139 28 0 chr12 101670649 101670685 -42115770 + CT-rich Low_complexity Low_complexity 1 37 0 494 305 48 32 chr12 101670853 101671040 -42115415 - MIR3 SINE MIR -13 195 6 204 184 0 0 chr12 101671883 101671921 -42114534 - L2 LINE L2 -4 3309 3272 23 33 0 0 chr12 101671954 101671984 -42114471 + AT_rich Low_complexity Low_complexity 1 30 0 351 174 47 47 chr12 101672021 101672107 -42114348 + MIR SINE MIR 177 262 0 183 296 0 19 chr12 101672119 101672173 -42114282 - L2 LINE L2 -1 3271 3219 303 303 43 21 chr12 101672516 101672750 -42113705 - L1ME LINE L1 -335 5786 5548 26 50 0 0 chr12 101672791 101672831 -42113624 + AT_rich Low_complexity Low_complexity 1 40 0 2212 96 18 0 chr12 101673361 101673643 -42112812 - AluSg SINE Alu -23 287 1 1893 150 3 10 chr12 101674545 101674852 -42111603 - AluJo SINE Alu -3 309 5 1878 151 3 7 chr12 101675211 101675527 -42110928 - AluJb SINE Alu 0 315 1 582 268 49 87 chr12 101675536 101676028 -42110427 - L1ME LINE L1 -1832 4314 3842 710 282 8 0 chr12 101676057 101676323 -42110132 - L1ME LINE L1 -2452 3694 3427 1341 283 52 16 chr12 101676331 101677021 -42109434 - L1ME LINE L1 -2887 3259 2545 1050 262 103 20 chr12 101677014 101677810 -42108645 - L1ME LINE L1 -492 5661 4807 * 3171 143 32 27 chr12 101677805 101677867 -42108588 - L1MD2 LINE L1 -475 5884 5824 1865 156 3 20 chr12 101677867 101678162 -42108293 + AluSx SINE Alu 1 290 -22 3171 143 32 27 chr12 101678162 101678727 -42107728 - L1MD2 LINE L1 -535 5824 5254 345 296 50 44 chr12 101678856 101679015 -42107440 - HAL1 LINE L1 -897 1610 1451 411 298 68 12 chr12 101679210 101679371 -42107084 - L1ME LINE L1 -5021 1098 929 2265 115 0 3 chr12 101679372 101679685 -42106770 - AluSx SINE Alu 0 312 1 2039 142 0 0 chr12 101680289 101680578 -42105877 - AluJb SINE Alu -21 291 3 198 366 177 0 chr12 101680580 101680766 -42105689 + L2 LINE L2 1721 1939 -1375 700 236 0 0 chr12 101680784 101680924 -42105531 - FLAM_A SINE Alu -2 140 1 206 373 0 0 chr12 101681099 101681166 -42105289 + L2 LINE L2 2218 2284 -1030 339 232 232 9 chr12 101681310 101681422 -42105033 + L2 LINE L2 3175 3311 -2 503 277 197 0 chr12 101681954 101682167 -42104288 - L2 LINE L2 -338 2976 2722 405 0 0 0 chr12 101682668 101682713 -42103742 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr12 101682712 101682735 -42103720 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 * 1916 144 32 0 chr12 101682713 101683009 -42103446 - AluSx SINE Alu -26 286 1 21 0 0 0 chr12 101683270 101683291 -42103164 + AT_rich Low_complexity Low_complexity 1 21 0 718 63 13 0 chr12 101683744 101683903 -42102552 - L1PA10 LINE L1 -3 6165 5864 2254 112 3 6 chr12 101684274 101684587 -42101868 - AluSx SINE Alu 0 312 1 426 20 0 0 chr12 101684625 101684676 -42101779 + (CAATT)n Simple_repeat Simple_repeat 4 54 0 2045 133 3 0 chr12 101685015 101685301 -42101154 - AluSx SINE Alu -25 287 1 1818 151 3 17 chr12 101685470 101685762 -42100693 + AluSx SINE Alu 5 292 -20 936 271 0 24 chr12 101685763 101686010 -42100445 + MIR SINE MIR 22 262 0 2223 128 0 3 chr12 101686434 101686746 -42099709 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr12 101686934 101686962 -42099493 + AT_rich Low_complexity Low_complexity 1 28 0 2202 116 3 0 chr12 101687142 101687444 -42099011 - AluSg SINE Alu -7 303 1 2308 107 3 0 chr12 101688332 101688630 -42097825 - AluSq SINE Alu -14 299 1 226 274 96 67 chr12 101688653 101688788 -42097667 + L2 LINE L2 3171 3309 -4 272 271 15 30 chr12 101688801 101688934 -42097521 + CT-rich Low_complexity Low_complexity 3 133 0 336 307 220 0 chr12 101689270 101689420 -42097035 + MER5A DNA MER1_type 4 186 -3 568 250 136 70 chr12 101689529 101690086 -42096369 - L1MC5 LINE L1 -52 7909 7316 550 269 173 23 chr12 101690247 101690507 -42095948 - LTR16C LTR ERVL -5 486 188 787 146 116 18 chr12 101691071 101691235 -42095220 - Tigger2 DNA MER2_type -10 2708 2529 434 149 21 21 chr12 101691393 101691455 -42095000 + MER21A LTR ERV1 72 136 -795 297 0 0 0 chr12 101691455 101691488 -42094967 + (TC)n Simple_repeat Simple_repeat 2 34 0 434 149 21 21 chr12 101691488 101691519 -42094936 + MER21A LTR ERV1 135 165 -766 * 1322 139 36 28 chr12 101691515 101691734 -42094721 + MER39 LTR ERV1 219 439 -268 1228 132 43 30 chr12 101691734 101691949 -42094506 - MSTC LTR MaLR 0 428 208 2330 101 3 7 chr12 101691949 101692257 -42094198 - AluSx SINE Alu -5 307 1 1228 132 43 30 chr12 101692257 101692276 -42094179 - MSTC LTR MaLR -220 208 191 1250 86 6 6 chr12 101692277 101692451 -42094004 + L1PA7 LINE L1 5977 6150 -4 1121 153 5 39 chr12 101692551 101692754 -42093701 - MSTC LTR MaLR -232 196 1 328 102 0 0 chr12 101692771 101692820 -42093635 + MER39B LTR ERV1 416 464 -189 2380 199 55 43 chr12 101692830 101693413 -42093042 + MER21B LTR ERV1 272 861 -2 237 65 0 0 chr12 101693446 101693477 -42092978 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2106 137 0 0 chr12 101693591 101693884 -42092571 + AluSx SINE Alu 1 293 -19 1021 137 0 0 chr12 101694223 101694376 -42092079 - AluSc SINE Alu -5 304 152 872 97 0 0 chr12 101694491 101694604 -42091851 - AluSc SINE Alu -196 113 1 337 310 48 7 chr12 101694609 101694754 -42091701 - MLT1J LTR MaLR -71 440 290 213 361 0 0 chr12 101696556 101696628 -42089827 - L2 LINE L2 -8 3264 3193 204 338 50 0 chr12 101697089 101697169 -42089286 - L3b LINE CR1 -202 1381 1298 436 262 24 42 chr12 101698130 101698298 -42088157 + CT-rich Low_complexity Low_complexity 1 165 0 21 36 0 0 chr12 101698415 101698443 -42088012 + AT_rich Low_complexity Low_complexity 1 28 0 235 397 30 15 chr12 101699168 101699255 -42087200 + MER5A DNA MER1_type 57 148 -41 2292 104 0 0 chr12 101699255 101699552 -42086903 - AluY SINE Alu -14 297 1 235 397 30 15 chr12 101699552 101699595 -42086860 + MER5A DNA MER1_type 148 189 0 198 396 60 7 chr12 101699601 101699750 -42086705 + L3 LINE CR1 1284 1440 -137 712 253 0 13 chr12 101699785 101699943 -42086512 - MER91B DNA MER1_type -28 162 7 528 332 65 5 chr12 101699968 101700182 -42086273 + MIR SINE MIR 15 241 -21 276 188 0 0 chr12 101700576 101700640 -42085815 + (ATG)n Simple_repeat Simple_repeat 2 65 0 2255 131 0 0 chr12 101700693 101700998 -42085457 + AluSx SINE Alu 1 305 -7 1025 273 48 75 chr12 101701013 101701383 -42085072 + L1ME LINE L1 3 354 -5765 1567 171 51 14 chr12 101701383 101701675 -42084780 + AluJb SINE Alu 1 303 -9 1025 273 48 75 chr12 101701675 101701865 -42084590 + L1ME LINE L1 354 548 -5571 375 60 0 0 chr12 101701881 101701931 -42084524 + (TG)n Simple_repeat Simple_repeat 2 51 0 420 238 63 103 chr12 101701953 101702352 -42084103 + L1ME LINE L1 3790 4172 -1957 2352 107 3 0 chr12 101702363 101702673 -42083782 + AluSp SINE Alu 1 311 -2 321 270 82 69 chr12 101702687 101702742 -42083713 + L1ME LINE L1 5651 5704 -449 1886 144 7 3 chr12 101702742 101703041 -42083414 - AluJb SINE Alu -12 300 1 321 270 82 69 chr12 101703041 101703144 -42083311 + L1ME LINE L1 5704 5811 -342 234 263 13 13 chr12 101703557 101703633 -42082822 + LTR33A LTR ERVL 444 519 -4 381 92 42 33 chr12 101703872 101703992 -42082463 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 57 0 0 chr12 101704543 101704578 -42081877 + AT_rich Low_complexity Low_complexity 1 35 0 301 326 143 54 chr12 101705459 101705683 -42080772 - L2 LINE L2 -1 3271 3028 632 267 94 38 chr12 101705802 101706357 -42080098 + L1ME3A LINE L1 4118 4703 -1443 390 284 18 35 chr12 101706433 101706718 -42079737 + L1ME3A LINE L1 4920 5199 -947 21 0 0 0 chr12 101706720 101706741 -42079714 + AT_rich Low_complexity Low_complexity 1 21 0 1348 178 26 40 chr12 101706857 101706989 -42079466 - MLT1D LTR MaLR 0 505 373 3368 108 2 0 chr12 101706989 101707470 -42078985 + L1PA13 LINE L1 5682 6163 0 1348 178 26 40 chr12 101707470 101707641 -42078814 - MLT1D LTR MaLR -132 373 206 817 272 73 3 chr12 101707785 101708086 -42078369 + L1ME3A LINE L1 5594 5915 -255 23 0 0 0 chr12 101708181 101708204 -42078251 + AT_rich Low_complexity Low_complexity 1 23 0 300 268 67 78 chr12 101708420 101708599 -42077856 + L1ME3A LINE L1 5968 6144 -26 1160 90 43 5 chr12 101708663 101708851 -42077604 + L1 LINE L1 4110 4304 -1842 2418 154 34 4 chr12 101708856 101709331 -42077124 + L1 LINE L1 4709 5197 -949 2197 113 0 0 chr12 101709331 101709622 -42076833 + AluSx SINE Alu 1 291 -21 1414 70 0 0 chr12 101709622 101709809 -42076646 + L1MA2 LINE L1 6118 6304 0 343 246 60 8 chr12 101709846 101709980 -42076475 - L1MC4 LINE L1 0 8042 7902 180 222 20 10 chr12 101709982 101710081 -42076374 + (TA)n Simple_repeat Simple_repeat 2 101 0 380 250 13 41 chr12 101710101 101710251 -42076204 - L1MC4 LINE L1 -166 7876 7621 511 164 16 8 chr12 101710263 101710385 -42076070 - L1M4 LINE L1 -1002 5144 5022 2132 143 20 15 chr12 101710387 101710778 -42075677 - L1MA4 LINE L1 -5 6295 5903 387 268 143 48 chr12 101710790 101711021 -42075434 - L1MC4 LINE L1 -314 7728 7476 * 2167 268 66 24 chr12 101711014 101711526 -42074929 - L1MC4a LINE L1 -437 7371 6882 2137 127 51 23 chr12 101711526 101711880 -42074575 + THE1B LTR MaLR 1 364 0 2167 268 66 24 chr12 101711880 101712102 -42074353 - L1MC4a LINE L1 -926 6882 6671 387 0 0 0 chr12 101712102 101712145 -42074310 + (CA)n Simple_repeat Simple_repeat 2 44 0 2167 268 66 24 chr12 101712145 101712168 -42074287 - L1MC4a LINE L1 -1137 6671 6650 2248 111 0 35 chr12 101712168 101712483 -42073972 - AluSx SINE Alu -8 304 1 2167 268 66 24 chr12 101712483 101712759 -42073696 - L1MC4a LINE L1 -1158 6650 6293 2137 121 7 13 chr12 101712823 101713128 -42073327 - AluSx SINE Alu -9 303 1 864 181 20 0 chr12 101715639 101715788 -42070667 - FRAM SINE Alu -20 156 5 22 0 0 0 chr12 101715790 101715812 -42070643 + AT_rich Low_complexity Low_complexity 1 22 0 277 337 136 44 chr12 101715888 101716220 -42070235 - L2 LINE L2 -1540 1774 1474 2351 130 11 13 chr12 101716220 101716596 -42069859 + THE1C LTR MaLR 1 375 0 277 337 136 44 chr12 101716596 101717118 -42069337 - L2 LINE L2 -1840 1474 842 298 284 34 111 chr12 101717375 101717699 -42068756 - L2 LINE L2 -162 3110 2812 23 92 0 0 chr12 101718625 101718690 -42067765 + AT_rich Low_complexity Low_complexity 1 65 0 1663 176 20 3 chr12 101720369 101720671 -42065784 - AluJb SINE Alu -5 307 1 210 71 0 0 chr12 101720700 101720728 -42065727 + (T)n Simple_repeat Simple_repeat 1 28 0 651 244 217 9 chr12 101720926 101721143 -42065312 + MIR SINE MIR 1 262 0 469 317 55 18 chr12 101723086 101723250 -42063205 - MER5B DNA MER1_type -2 176 7 23 0 0 0 chr12 101724903 101724926 -42061529 + AT_rich Low_complexity Low_complexity 1 23 0 228 265 77 75 chr12 101724969 101725504 -42060951 - L1M4 LINE L1 -2202 3944 3409 * 1404 167 17 29 chr12 101725489 101725834 -42060621 - L1M4 LINE L1 -743 5403 5101 293 256 61 0 chr12 101725960 101726042 -42060413 - MIR SINE MIR -3 259 173 1011 213 5 0 chr12 101726043 101726245 -42060210 - L1M4 LINE L1 -1060 5086 4884 316 339 173 12 chr12 101727926 101728094 -42058361 + MIR SINE MIR 7 201 -61 2109 128 0 3 chr12 101728176 101728472 -42057983 + AluSx SINE Alu 1 295 -17 274 329 0 13 chr12 101728521 101728600 -42057855 - L2 LINE L2 -4 3268 3191 217 321 45 60 chr12 101729660 101729794 -42056661 - MER5B DNA MER1_type -1 177 46 191 226 151 0 chr12 101729811 101729864 -42056591 + MER5A DNA MER1_type 128 188 -1 35 24 0 0 chr12 101730269 101730311 -42056144 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr12 101730452 101730486 -42055969 + AT_rich Low_complexity Low_complexity 1 34 0 527 264 107 6 chr12 101730600 101730778 -42055677 + MIR SINE MIR 62 257 -5 287 239 26 44 chr12 101731703 101731816 -42054639 - L1ME4a LINE L1 0 6121 6011 1063 158 33 6 chr12 101731830 101732013 -42054442 + MER20 DNA MER1_type 31 218 -1 982 290 17 14 chr12 101732082 101732427 -42054028 - L1ME4a LINE L1 -157 5964 5619 366 301 202 22 chr12 101732428 101732611 -42053844 + MIR SINE MIR 34 249 -13 186 271 31 10 chr12 101733786 101733850 -42052605 + MIR3 SINE MIR 117 177 -47 257 297 180 0 chr12 101733912 101734023 -42052432 - MIR SINE MIR -12 250 120 211 343 0 18 chr12 101734072 101734172 -42052283 - MIR SINE MIR -90 118 24 2021 162 0 0 chr12 101734579 101734887 -42051568 + AluSx SINE Alu 1 308 -4 295 131 115 16 chr12 101735437 101735498 -42050957 - AluS SINE Alu -4 297 231 1489 129 0 0 chr12 101735547 101735764 -42050691 - AluSx SINE Alu -1 311 95 472 177 184 43 chr12 101735774 101735915 -42050540 + L2 LINE L2 2928 3088 -225 641 110 0 0 chr12 101735928 101736019 -42050436 - AluSx SINE Alu -221 91 1 923 265 70 25 chr12 101736026 101736384 -42050071 + LTR52 LTR ERVL 47 420 -1 2487 237 134 43 chr12 101736462 101736517 -42049938 - L2 LINE L2 -4 3309 3260 875 208 56 0 chr12 101736517 101736695 -42049760 - MER5A DNA MER1_type -1 188 1 2487 237 134 43 chr12 101736695 101737834 -42048621 - L2 LINE L2 -53 3260 1974 246 299 14 56 chr12 101737835 101737979 -42048476 + L2 LINE L2 2607 2744 -570 31 26 0 0 chr12 101738175 101738213 -42048242 + AT_rich Low_complexity Low_complexity 1 38 0 495 371 6 17 chr12 101738279 101738457 -42047998 + MIR SINE MIR 54 229 -33 231 36 0 0 chr12 101740135 101740163 -42046292 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2009 125 0 0 chr12 101740172 101740444 -42046011 - AluSx SINE Alu -40 272 1 821 322 72 66 chr12 101741025 101741860 -42044595 - L2 LINE L2 -767 2547 1708 2616 27 0 7 chr12 101742005 101742306 -42044149 + AluY SINE Alu 1 299 -12 317 315 46 9 chr12 101742424 101742532 -42043923 + L2 LINE L2 3160 3271 -1 229 360 90 0 chr12 101743786 101743886 -42042569 - L2 LINE L2 -19 3253 3145 32 75 0 0 chr12 101744350 101744417 -42042038 + AT_rich Low_complexity Low_complexity 1 67 0 1488 251 77 3 chr12 101745297 101745797 -42040658 - MLT1E1 LTR MaLR -5 649 1 717 304 79 1 chr12 101746273 101746679 -42039776 - ERVL LTR ERVL -2138 2858 2397 644 264 124 58 chr12 101746777 101747574 -42038881 + L1MC/D LINE L1 4797 5654 -748 26 0 0 0 chr12 101747574 101747600 -42038855 + AT_rich Low_complexity Low_complexity 1 26 0 350 362 40 0 chr12 101747664 101747813 -42038642 - ERVL LTR ERVL -945 4819 4665 36156 93 17 9 chr12 101749419 101755514 -42030941 - L1PA6 LINE L1 -7 6147 11 21 0 0 0 chr12 101755587 101755608 -42030847 + AT_rich Low_complexity Low_complexity 1 21 0 246 195 138 23 chr12 101756013 101756100 -42030355 - L2 LINE L2 0 3313 3217 205 294 22 22 chr12 101756108 101756200 -42030255 - L2 LINE L2 -828 2486 2395 317 200 17 0 chr12 101756268 101756328 -42030127 - Charlie8 DNA MER1_type 0 2417 2357 214 297 173 24 chr12 101756425 101756674 -42029781 - L2 LINE L2 -102 3211 2926 473 294 52 62 chr12 101758029 101758451 -42028004 + HAL1 LINE L1 1331 1748 -759 21 57 0 0 chr12 101758487 101758522 -42027933 + AT_rich Low_complexity Low_complexity 1 35 0 270 81 0 0 chr12 101758708 101758745 -42027710 + (CA)n Simple_repeat Simple_repeat 2 38 0 2226 115 0 0 chr12 101758853 101759158 -42027297 - AluSx SINE Alu -7 305 1 414 344 84 8 chr12 101759305 101759567 -42026888 + L1M4 LINE L1 2110 2391 -3755 381 315 153 28 chr12 101759719 101760725 -42025730 + L1M4 LINE L1 3870 5001 -1145 31837 59 9 2 chr12 101760808 101766918 -42019537 + L1PA5 LINE L1 1 6154 0 329 357 107 46 chr12 101767214 101767782 -42018673 - L2 LINE L2 -563 2751 2149 2448 73 3 0 chr12 101768103 101768403 -42018052 + AluY SINE Alu 1 301 -10 465 306 107 35 chr12 101768703 101769125 -42017330 - L2 LINE L2 -1646 1668 1217 1451 183 4 0 chr12 101769327 101769568 -42016887 - AluJb SINE Alu -70 242 1 241 167 0 0 chr12 101770325 101770361 -42016094 + Alu SINE Alu 134 169 -134 2858 107 0 0 chr12 101770633 101770997 -42015458 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr12 101771968 101771992 -42014463 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr12 101772280 101772309 -42014146 + (T)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr12 101772925 101772949 -42013506 + AT_rich Low_complexity Low_complexity 1 24 0 2340 97 0 3 chr12 101772961 101773260 -42013195 - AluSc SINE Alu -7 302 5 1788 162 30 7 chr12 101773263 101773559 -42012896 - AluJo SINE Alu -9 303 1 471 211 18 99 chr12 101773649 101773820 -42012635 - L2 LINE L2 -2 3311 3155 1140 181 57 22 chr12 101773820 101774047 -42012408 + MER46A DNA MER2_type 2 236 0 271 156 55 8 chr12 101774630 101774758 -42011697 + (TA)n Simple_repeat Simple_repeat 2 135 0 415 186 60 6 chr12 101775025 101775259 -42011196 + (TA)n Simple_repeat Simple_repeat 1 246 0 338 90 84 19 chr12 101775410 101775565 -42010890 + (TA)n Simple_repeat Simple_repeat 1 165 0 185 19 130 0 chr12 101775591 101775645 -42010810 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 36 0 0 chr12 101776323 101776351 -42010104 + AT_rich Low_complexity Low_complexity 1 28 0 681 325 75 11 chr12 101777271 101777551 -42008904 + LTR16C LTR ERVL 186 483 -8 180 125 0 0 chr12 101777627 101777659 -42008796 + (T)n Simple_repeat Simple_repeat 1 32 0 3130 80 80 110 chr12 101779089 101779691 -42006764 - THE1-int LTR MaLR -996 584 1 319 302 21 0 chr12 101779852 101779948 -42006507 - L2 LINE L2 -1042 2272 2175 701 130 0 0 chr12 101779948 101780048 -42006407 + AluSg/x SINE Alu 210 309 -3 21 0 0 0 chr12 101780575 101780596 -42005859 + AT_rich Low_complexity Low_complexity 1 21 0 413 350 16 0 chr12 101781926 101782049 -42004406 - L2 LINE L2 -9 3263 3139 322 247 209 19 chr12 101782295 101782385 -42004070 - MER112 DNA MER1_type -6 254 182 2143 126 10 0 chr12 101782385 101782687 -42003768 + AluSg SINE Alu 1 305 -5 322 247 209 19 chr12 101782687 101782754 -42003701 - MER112 DNA MER1_type -78 182 67 602 201 75 35 chr12 101782763 101782937 -42003518 - MER20 DNA MER1_type 0 219 39 1054 232 85 46 chr12 101784786 101785332 -42001123 + MER39 LTR ERV1 6 542 0 543 227 78 0 chr12 101785550 101785691 -42000764 + MER39 LTR ERV1 552 703 -4 243 0 0 0 chr12 101787141 101787168 -41999287 + (T)n Simple_repeat Simple_repeat 1 27 0 2359 79 3 29 chr12 101787211 101787526 -41998929 + AluSx SINE Alu 1 307 -5 378 42 0 0 chr12 101788087 101788135 -41998320 + (CA)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr12 101788216 101788251 -41998204 + (T)n Simple_repeat Simple_repeat 1 35 0 1930 226 62 17 chr12 101788971 101789439 -41997016 - MLT1H LTR MaLR -60 489 1 188 372 42 31 chr12 101790494 101790685 -41995770 - MIR SINE MIR -50 212 20 22 0 0 0 chr12 101790714 101790736 -41995719 + AT_rich Low_complexity Low_complexity 1 22 0 259 255 47 57 chr12 101790972 101791078 -41995377 - MIR SINE MIR -51 211 107 1089 205 83 67 chr12 101791142 101791596 -41994859 - MER39 LTR ERV1 -62 645 1 264 305 48 19 chr12 101791602 101791707 -41994748 - MIR SINE MIR -142 120 13 564 311 61 5 chr12 101791885 101792097 -41994358 + MIR SINE MIR 13 236 -26 1433 232 97 37 chr12 101792097 101792577 -41993878 + MER39 LTR ERV1 1 665 -42 1979 161 143 40 chr12 101792814 101793311 -41993144 + LTR10A LTR ERV1 1 548 -61 488 16 16 0 chr12 101793359 101793420 -41993035 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 549 288 137 10 chr12 101793508 101793713 -41992742 - MIR SINE MIR -3 259 29 2215 215 104 63 chr12 101794112 101794806 -41991649 + MER72 LTR ERV1 1 722 0 1176 200 42 94 chr12 101796288 101796319 -41990136 - MER39 LTR ERV1 0 707 676 2181 163 12 53 chr12 101796319 101796737 -41989718 + MER57A LTR ERV1 3 403 0 1176 200 42 94 chr12 101796737 101796996 -41989459 - MER39 LTR ERV1 -31 676 441 1477 139 146 11 chr12 101796996 101797263 -41989192 - AluSg1 SINE Alu -4 305 3 1176 200 42 94 chr12 101797263 101797376 -41989079 - MER39 LTR ERV1 -266 441 324 278 160 20 0 chr12 101797427 101797477 -41988978 - MER34 LTR ERV1 -491 51 1 214 256 26 39 chr12 101797575 101797653 -41988802 - MIR SINE MIR -27 235 159 981 225 64 97 chr12 101797655 101797916 -41988539 - LTR37B LTR ERV1 0 468 229 2208 155 138 59 chr12 101797916 101798387 -41988068 - LTR54 LTR ERV1 -2 508 1 981 225 64 97 chr12 101798387 101798609 -41987846 - LTR37B LTR ERV1 -239 229 1 417 297 58 13 chr12 101798609 101798764 -41987691 - MIR SINE MIR -100 162 1 29 28 0 0 chr12 101799134 101799170 -41987285 + AT_rich Low_complexity Low_complexity 1 36 0 1694 144 42 4 chr12 101799787 101800051 -41986404 + AluJo SINE Alu 1 274 -38 879 231 5 60 chr12 101800419 101800618 -41985837 - MER5A DNA MER1_type 0 189 2 2155 113 3 0 chr12 101800817 101801144 -41985311 - AluSx SINE Alu 0 328 1 823 295 80 57 chr12 101804760 101805282 -41981173 + L2 LINE L2 2723 3272 0 887 187 18 93 chr12 101805468 101805557 -41980898 - MER58A DNA MER1_type -2209 211 117 2410 126 0 37 chr12 101805557 101805907 -41980548 + MER1B DNA MER1_type 1 337 0 887 187 18 93 chr12 101805907 101806042 -41980413 - MER58A DNA MER1_type -2303 117 4 231 323 60 30 chr12 101806111 101806244 -41980211 - L2 LINE L2 -8 3264 3128 1067 182 107 44 chr12 101807701 101807926 -41978529 + MER8 DNA MER2_type 1 239 0 27 0 0 0 chr12 101808545 101808572 -41977883 + AT_rich Low_complexity Low_complexity 1 27 0 180 132 53 26 chr12 101808746 101808784 -41977671 + MIR SINE MIR 108 146 -62 2123 166 29 32 chr12 101808899 101809456 -41976999 + MLT2A2 LTR ERVL 1 552 -2 698 303 86 32 chr12 101809906 101810279 -41976176 - L1ME LINE L1 -512 5650 5258 251 317 77 0 chr12 101810350 101810454 -41976001 - L1ME LINE L1 -975 5171 5060 279 323 42 21 chr12 101810804 101810900 -41975555 + MIR SINE MIR 20 117 -145 22 35 0 0 chr12 101810947 101810976 -41975479 + AT_rich Low_complexity Low_complexity 1 29 0 857 326 39 24 chr12 101811197 101811611 -41974844 + LTR16A LTR ERVL 25 444 -6 1214 299 68 30 chr12 101811617 101812179 -41974276 + HERV16 LTR ERVL 1 583 -4413 1047 342 81 16 chr12 101812180 101812627 -41973828 + HERV16 LTR ERVL 2584 3059 -1937 1455 257 91 62 chr12 101812760 101813309 -41973146 + MER77 LTR ERV1 41 605 0 1040 322 54 62 chr12 101813387 101813485 -41972970 + HERV16 LTR ERVL 3195 3292 -2362 2410 131 25 8 chr12 101813485 101813843 -41972612 - THE1B LTR MaLR 0 364 1 1040 322 54 62 chr12 101813843 101814502 -41971953 + HERV16 LTR ERVL 3292 3946 -1708 441 310 33 54 chr12 101814593 101814748 -41971707 + HERV16 LTR ERVL 4572 4722 -1042 2013 176 75 61 chr12 101814748 101815242 -41971213 + MLT1D LTR MaLR 5 505 0 441 310 33 54 chr12 101815242 101815328 -41971127 + HERV16 LTR ERVL 4722 4808 -956 269 221 269 0 chr12 101815426 101815530 -41970925 + MIR SINE MIR 98 229 -33 398 266 71 127 chr12 101815550 101815960 -41970495 + L2 LINE L2 2462 2848 -466 22 0 0 0 chr12 101816110 101816132 -41970323 + AT_rich Low_complexity Low_complexity 1 22 0 345 294 20 0 chr12 101816349 101816451 -41970004 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 363 275 143 12 chr12 101816481 101816670 -41969785 - MER20B DNA MER1_type 0 219 7 298 236 132 57 chr12 101816685 101816791 -41969664 + L2 LINE L2 3200 3313 0 191 318 100 82 chr12 101816838 101817168 -41969287 + L2 LINE L2 2937 3272 0 916 288 4 8 chr12 101817532 101817768 -41968687 + MIR SINE MIR 24 258 -4 2395 96 8 36 chr12 101818311 101818542 -41967913 + THE1A LTR MaLR 1 220 -135 2071 137 0 10 chr12 101818542 101818855 -41967600 + AluSx SINE Alu 1 310 -2 2395 96 8 36 chr12 101818855 101818988 -41967467 + THE1A LTR MaLR 220 355 0 4114 67 0 2 chr12 101818988 101819543 -41966912 + THE1-int LTR MaLR 1 554 -1026 1816 114 64 0 chr12 101819543 101819823 -41966632 + THE1A LTR MaLR 58 355 0 247 238 129 99 chr12 101820164 101820366 -41966089 - L2 LINE L2 0 3272 3065 353 262 43 43 chr12 101820453 101820594 -41965861 + MIR SINE MIR 44 184 -78 184 325 0 39 chr12 101821190 101821267 -41965188 + MIR SINE MIR 89 162 -100 317 333 95 16 chr12 101821923 101822049 -41964406 + MIR3 SINE MIR 7 142 -66 300 302 47 23 chr12 101822753 101822882 -41963573 + MIR SINE MIR 20 151 -111 891 195 170 14 chr12 101823752 101824029 -41962426 + MER5C DNA MER1_type 2 321 -3 390 227 0 42 chr12 101824255 101824374 -41962081 - LTR41 LTR ERVL -6 767 654 589 188 53 18 chr12 101824792 101824962 -41961493 - LTR41 LTR ERVL -597 176 1 2325 107 7 0 chr12 101824989 101825298 -41961157 + AluSx SINE Alu 1 311 -1 658 304 45 9 chr12 101825562 101825786 -41960669 + MIR SINE MIR 29 260 -2 295 299 38 71 chr12 101826054 101826265 -41960190 + MLT1H LTR MaLR 104 307 -242 314 350 10 0 chr12 101826356 101826453 -41960002 + L3 LINE CR1 1477 1574 -3 916 185 60 0 chr12 101826548 101826732 -41959723 - MER58A DNA MER1_type 0 224 30 242 77 26 0 chr12 101826822 101826861 -41959594 + MADE1 DNA Mariner 38 77 -3 743 257 75 0 chr12 101826894 101827108 -41959347 - MIR SINE MIR -27 235 6 719 320 45 8 chr12 101827138 101827382 -41959073 - MIR SINE MIR -4 258 6 445 249 57 44 chr12 101827503 101827732 -41958723 + Charlie8 DNA MER1_type 34 265 -2152 235 224 0 0 chr12 101827816 101827865 -41958590 + (TG)n Simple_repeat Simple_repeat 2 50 0 261 284 0 14 chr12 101828443 101828517 -41957938 + MIR SINE MIR 183 255 -7 370 317 90 14 chr12 101829013 101829158 -41957297 + MIR3 SINE MIR 5 160 -48 371 281 70 9 chr12 101829158 101829272 -41957183 + MER5B DNA MER1_type 1 121 -57 309 315 45 55 chr12 101829990 101830190 -41956265 - MIR SINE MIR -43 219 22 650 241 19 50 chr12 101830353 101830572 -41955883 + MIR SINE MIR 47 257 -5 539 221 0 26 chr12 101830646 101830759 -41955696 + MER5A DNA MER1_type 76 185 -4 488 248 258 10 chr12 101830813 101831011 -41955444 - MIR SINE MIR 0 262 16 507 192 102 18 chr12 101832149 101832316 -41954139 - MIR3 SINE MIR -15 193 13 218 286 93 22 chr12 101833383 101833480 -41952975 - MIR SINE MIR -55 153 49 289 224 26 40 chr12 101834849 101834925 -41951530 + L2 LINE L2 3198 3272 0 237 196 0 0 chr12 101835154 101835205 -41951250 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr12 101835362 101835397 -41951058 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 101835460 101835484 -41950971 + AT_rich Low_complexity Low_complexity 1 24 0 579 165 134 6 chr12 101836883 101837047 -41949408 + MER53 DNA DNA 3 187 -2 253 171 171 98 chr12 101837110 101837233 -41949222 + MER117 DNA MER1_type 19 150 -47 334 303 62 73 chr12 101837334 101837512 -41948943 + L2 LINE L2 2715 2890 -424 376 327 7 13 chr12 101837703 101837853 -41948602 + L2 LINE L2 3165 3313 0 853 248 39 68 chr12 101838251 101838606 -41947849 + MLT2C1 LTR ERVL 13 357 -40 275 104 21 0 chr12 101838618 101838666 -41947789 + (TA)n Simple_repeat Simple_repeat 2 50 0 244 157 20 0 chr12 101838666 101838717 -41947738 + MLT2F LTR ERVL 612 663 0 198 0 0 0 chr12 101838758 101838780 -41947675 + (A)n Simple_repeat Simple_repeat 1 22 0 1762 205 43 3 chr12 101839176 101839527 -41946928 + MLT1A1 LTR MaLR 1 365 0 263 247 12 25 chr12 101841277 101841358 -41945097 + L2 LINE L2 2166 2245 -1069 180 77 0 0 chr12 101841619 101841645 -41944810 + (TC)n Simple_repeat Simple_repeat 2 27 0 190 313 15 15 chr12 101842096 101842163 -41944292 - MIR SINE MIR -149 113 47 270 0 0 0 chr12 101842563 101842593 -41943862 + (CA)n Simple_repeat Simple_repeat 2 31 0 2169 121 0 3 chr12 101843395 101843685 -41942770 - AluSx SINE Alu -17 295 7 2111 235 62 14 chr12 101844404 101844970 -41941485 + MLT1E LTR MaLR 1 593 0 2375 75 0 0 chr12 101845862 101846156 -41940299 - AluY SINE Alu -16 295 2 453 282 35 18 chr12 101848775 101848916 -41937539 + MER5B DNA MER1_type 1 130 -48 200 368 13 0 chr12 101849985 101850061 -41936394 + L2 LINE L2 2883 2959 -355 248 232 0 2 chr12 101850251 101850318 -41936137 + MLT1G LTR MaLR 20 76 -466 394 199 167 112 chr12 101850379 101850699 -41935756 + MLT1G LTR MaLR 205 548 -7 302 274 0 0 chr12 101850821 101850883 -41935572 + MIR SINE MIR 201 262 0 294 189 0 0 chr12 101851099 101851152 -41935303 + Alu SINE Alu 1 53 -249 34 0 0 0 chr12 101851167 101851201 -41935254 + AT_rich Low_complexity Low_complexity 1 34 0 415 172 259 17 chr12 101851802 101851918 -41934537 + MIR SINE MIR 71 214 -48 219 114 0 0 chr12 101852257 101852292 -41934163 + (CA)n Simple_repeat Simple_repeat 1 35 0 1450 242 19 14 chr12 101852365 101852729 -41933726 + MLT2D LTR ERVL 1 366 -48 199 0 65 0 chr12 101852744 101852775 -41933680 + (TA)n Simple_repeat Simple_repeat 1 33 0 252 86 0 0 chr12 101852782 101852817 -41933638 + (TC)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr12 101852820 101852843 -41933612 + AT_rich Low_complexity Low_complexity 1 23 0 580 67 54 20 chr12 101852866 101853015 -41933440 + (TA)n Simple_repeat Simple_repeat 1 154 0 280 170 0 6 chr12 101853032 101853091 -41933364 + MLT2C1 LTR ERVL 350 397 0 336 252 34 75 chr12 101854222 101854369 -41932086 + MIR SINE MIR 68 208 -54 391 336 14 7 chr12 101855049 101855189 -41931266 + MIR3 SINE MIR 61 201 -7 787 198 35 6 chr12 101855240 101855412 -41931043 - MER5B DNA MER1_type 0 178 2 1879 129 3 16 chr12 101855759 101856107 -41930348 - MER4A LTR ERV1 0 664 263 523 128 53 11 chr12 101856107 101856201 -41930254 - MER4A LTR ERV1 -566 98 1 255 31 0 0 chr12 101856348 101856380 -41930075 + (CA)n Simple_repeat Simple_repeat 2 33 0 1809 122 187 92 chr12 101856597 101857063 -41929392 - LTR54 LTR ERV1 0 510 1 225 0 0 0 chr12 101857448 101857473 -41928982 + (A)n Simple_repeat Simple_repeat 1 25 0 242 226 33 31 chr12 101858214 101858292 -41928163 - MIR SINE MIR -69 139 76 594 41 0 0 chr12 101858692 101858765 -41927690 + (TA)n Simple_repeat Simple_repeat 1 73 0 362 321 130 28 chr12 101858893 101859106 -41927349 + MIR SINE MIR 4 233 -29 210 37 0 0 chr12 101859384 101859411 -41927044 + (A)n Simple_repeat Simple_repeat 1 27 0 199 295 66 0 chr12 101859871 101859932 -41926523 - MIR SINE MIR 0 262 198 786 251 27 21 chr12 101859966 101860153 -41926302 - MIR SINE MIR -66 196 9 21 0 0 0 chr12 101861379 101861400 -41925055 + AT_rich Low_complexity Low_complexity 1 21 0 322 315 0 0 chr12 101862165 101862254 -41924201 + MIR SINE MIR 54 142 -66 195 316 18 0 chr12 101863310 101863367 -41923088 - L2 LINE L2 -2 3270 3213 213 234 0 0 chr12 101863558 101863605 -41922850 - L2 LINE L2 -306 2966 2920 527 250 0 0 chr12 101863780 101863900 -41922555 + MER58B DNA MER1_type 222 341 0 349 269 15 114 chr12 101864036 101864066 -41922389 + MER5A DNA MER1_type 9 40 -149 2132 130 27 32 chr12 101864066 101864442 -41922013 + THE1C LTR MaLR 1 374 -1 349 269 15 114 chr12 101864442 101864508 -41921947 + MER5A DNA MER1_type 40 111 -78 384 22 0 0 chr12 101864508 101864553 -41921902 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 349 269 15 114 chr12 101864553 101864656 -41921799 + MER5A DNA MER1_type 111 189 0 293 323 113 65 chr12 101864699 101865223 -41921232 - L2 LINE L2 -768 2546 1998 199 278 108 34 chr12 101865237 101865413 -41921042 + L2 LINE L2 2668 2856 -458 283 310 23 0 chr12 101865465 101865552 -41920903 + L2 LINE L2 2972 3060 -212 22 0 0 0 chr12 101866888 101866910 -41919545 + AT_rich Low_complexity Low_complexity 1 22 0 628 286 55 32 chr12 101867171 101867391 -41919064 + MIR SINE MIR 32 256 -6 335 325 139 33 chr12 101868331 101868540 -41917915 - L1MC4a LINE L1 -622 5548 5362 342 0 0 0 chr12 101868540 101868578 -41917877 + (TG)n Simple_repeat Simple_repeat 2 39 0 335 325 139 33 chr12 101868578 101868597 -41917858 - L1MC4a LINE L1 -808 5362 5622 1630 188 7 7 chr12 101868597 101868884 -41917571 - AluJo SINE Alu -25 287 1 335 325 139 33 chr12 101868884 101869122 -41917333 - L1MC4a LINE L1 -547 5623 5411 601 268 48 0 chr12 101869188 101869356 -41917099 - MER20 DNA MER1_type -1 218 43 186 343 0 0 chr12 101871858 101871925 -41914530 + L2 LINE L2 3185 3251 -62 189 255 61 102 chr12 101871927 101872025 -41914430 + L2 LINE L2 3158 3251 -21 565 197 57 35 chr12 101872056 101872284 -41914171 - L1MC5 LINE L1 -112 7849 7617 237 115 33 16 chr12 101872763 101872824 -41913631 + (TA)n Simple_repeat Simple_repeat 2 63 0 189 132 0 0 chr12 101872835 101872873 -41913582 + (TG)n Simple_repeat Simple_repeat 1 38 0 576 370 48 28 chr12 101872917 101873274 -41913181 + L1MEc LINE L1 125 488 -5908 2608 125 70 0 chr12 101873293 101873693 -41912762 + MSTA LTR MaLR 1 428 0 3150 237 70 40 chr12 101873693 101875978 -41910477 + L1MB5 LINE L1 3461 5807 -357 762 113 0 9 chr12 101875978 101876093 -41910362 + FLAM_C SINE Alu 5 118 -15 3150 237 70 40 chr12 101876093 101876461 -41909994 + L1MB5 LINE L1 5807 6163 -1 843 274 104 58 chr12 101876927 101877446 -41909009 + L2 LINE L2 2435 2977 -337 523 258 8 0 chr12 101877539 101877663 -41908792 + L2 LINE L2 3184 3308 -5 219 353 12 12 chr12 101877842 101877927 -41908528 - L3 LINE CR1 -859 718 634 2603 198 43 21 chr12 101878198 101878760 -41907695 - MER82 DNA MER2_type -1 652 79 204 125 0 0 chr12 101878801 101878833 -41907622 + (A)n Simple_repeat Simple_repeat 1 32 0 207 222 19 0 chr12 101878979 101879033 -41907422 - L2 LINE L2 -292 2980 2926 459 280 17 0 chr12 101879033 101879151 -41907304 + MER58A DNA MER1_type 1 120 0 196 350 90 0 chr12 101879215 101879315 -41907140 - L2 LINE L2 -427 2887 2779 322 332 72 67 chr12 101879353 101879742 -41906713 - L2 LINE L2 -639 2675 2285 2847 7 0 0 chr12 101880260 101880569 -41905886 + AluYa5 SINE Alu 1 309 -2 257 233 89 22 chr12 101880774 101880864 -41905591 + MLT1J2 LTR MaLR 1 96 -354 517 303 71 31 chr12 101880875 101881169 -41905286 + MLT1J1 LTR MaLR 141 446 0 29 28 0 0 chr12 101881258 101881294 -41905161 + AT_rich Low_complexity Low_complexity 1 36 0 217 218 127 18 chr12 101881715 101881770 -41904685 - L2 LINE L2 -8 3264 3204 2406 149 49 0 chr12 101882023 101882431 -41904024 + MSTC LTR MaLR 1 428 0 347 98 0 0 chr12 101882644 101882695 -41903760 - MIR3 SINE MIR -9 199 149 281 296 31 56 chr12 101883358 101883520 -41902935 + MER5B DNA MER1_type 1 158 -20 24 0 0 0 chr12 101883626 101883650 -41902805 + AT_rich Low_complexity Low_complexity 1 24 0 782 133 0 31 chr12 101884806 101884934 -41901521 + FLAM_C SINE Alu 5 128 -5 333 0 0 0 chr12 101884934 101884971 -41901484 + (TA)n Simple_repeat Simple_repeat 1 37 0 333 62 0 0 chr12 101884971 101885019 -41901436 + (GA)n Simple_repeat Simple_repeat 1 48 0 620 289 28 11 chr12 101885177 101885357 -41901098 + MIR SINE MIR 18 200 -62 405 274 34 8 chr12 101886177 101886294 -41900161 + MIR SINE MIR 79 198 -64 2170 107 0 10 chr12 101886705 101887004 -41899451 + AluSg SINE Alu 1 296 -14 342 241 120 9 chr12 101887037 101887145 -41899310 + L2 LINE L2 3153 3272 0 671 361 46 17 chr12 101887187 101887536 -41898919 + L3 LINE CR1 427 785 -792 1000 223 86 61 chr12 101887651 101887813 -41898642 + MLT1C LTR MaLR 6 163 -227 2312 106 0 0 chr12 101887813 101888105 -41898350 + AluSx SINE Alu 1 292 -20 1000 223 86 61 chr12 101888105 101888402 -41898053 + MLT1C LTR MaLR 163 390 0 1481 292 85 19 chr12 101888464 101889333 -41897122 - L2 LINE L2 0 3313 2390 184 282 0 0 chr12 101889327 101889366 -41897089 - MIR SINE MIR -123 85 47 * 323 264 85 28 chr12 101889790 101889896 -41896559 - L2 LINE L2 0 3272 3161 202 315 132 85 chr12 101889947 101890242 -41896213 + L3 LINE CR1 852 1160 -417 214 281 31 0 chr12 101890306 101890370 -41896085 + MIR SINE MIR 132 197 -65 352 294 175 40 chr12 101890413 101890641 -41895814 + L3 LINE CR1 1260 1518 -59 230 81 27 0 chr12 101893213 101893250 -41893205 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 256 367 44 0 chr12 101893263 101893353 -41893102 - L2 LINE L2 -32 3281 3188 281 363 76 13 chr12 101894142 101894299 -41892156 - L2 LINE L2 -10 3262 3096 755 246 164 5 chr12 101894318 101894538 -41891917 + MIR SINE MIR 7 261 -1 789 256 44 106 chr12 101895064 101895611 -41890844 + MLT1H LTR MaLR 35 547 -2 228 67 0 0 chr12 101897253 101897283 -41889172 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 245 357 37 104 chr12 101897877 101898174 -41888281 + L2 LINE L2 2996 3272 0 802 271 102 54 chr12 101898320 101898763 -41887692 + MLT1J LTR MaLR 3 466 -45 13233 162 63 11 chr12 101898782 101899136 -41887319 - L1PB1 LINE L1 -5 6862 6528 351 44 0 0 chr12 101899136 101899181 -41887274 + (TG)n Simple_repeat Simple_repeat 2 46 0 13233 162 63 11 chr12 101899181 101904972 -41881483 - L1PB1 LINE L1 -339 6528 399 491 45 45 0 chr12 101904985 101905052 -41881403 - U3 snRNA snRNA -147 70 1 354 255 114 87 chr12 101905432 101905616 -41880839 + MER5A DNA MER1_type 1 189 0 492 258 174 13 chr12 101905740 101905895 -41880560 + MER5A DNA MER1_type 9 188 -1 1969 167 3 16 chr12 101906065 101906436 -41880019 + MLT2D LTR ERVL 1 366 -48 258 106 16 48 chr12 101906508 101906572 -41879883 + MLT2B3 LTR ERVL 341 546 0 328 264 55 61 chr12 101907223 101907386 -41879069 + L2 LINE L2 3061 3222 -91 378 205 36 12 chr12 101907674 101907757 -41878698 + MER91A DNA MER1_type 110 194 -2 2253 109 7 7 chr12 101908853 101909155 -41877300 - AluSg1 SINE Alu -7 302 1 1675 180 10 20 chr12 101909247 101909541 -41876914 - AluJo SINE Alu -20 292 2 376 307 39 20 chr12 101910064 101910217 -41876238 - L2 LINE L2 -443 2871 2716 * 822 298 119 31 chr12 101910212 101910576 -41875879 + L2 LINE L2 2611 3000 -313 1265 184 93 41 chr12 101910587 101910951 -41875504 - LTR8A LTR ERV1 0 727 345 347 80 0 0 chr12 101910960 101911010 -41875445 + MADE1 DNA Mariner 31 80 0 316 193 0 0 chr12 101911013 101911070 -41875385 - LTR8 LTR ERV1 -384 343 287 726 227 62 127 chr12 101911115 101911423 -41875032 - LTR8 LTR ERV1 -439 288 1 759 257 71 61 chr12 101911429 101911552 -41874903 + L2 LINE L2 3015 3135 -178 840 158 0 0 chr12 101911552 101911685 -41874770 - FLAM_C SINE Alu 0 133 1 759 257 71 61 chr12 101911685 101911857 -41874598 + L2 LINE L2 3135 3313 0 555 343 74 19 chr12 101911881 101912245 -41874210 - L2 LINE L2 -656 2658 2275 2456 247 50 14 chr12 101912409 101912738 -41873717 - MER21B LTR ERV1 -51 812 496 2473 138 13 0 chr12 101912738 101913136 -41873319 - MER57A LTR ERV1 0 403 1 2456 247 50 14 chr12 101913136 101913453 -41873002 - MER21B LTR ERV1 -367 496 143 2727 141 17 76 chr12 101913968 101914012 -41872443 + MER34C LTR ERV1 14 59 -526 3006 154 31 6 chr12 101914012 101914530 -41871925 + LTR26B LTR ERV1 1 531 0 2727 141 17 76 chr12 101914530 101915088 -41871367 + MER34C LTR ERV1 59 580 -5 2693 45 0 3 chr12 101915121 101915433 -41871022 + AluY SINE Alu 1 311 0 4163 99 54 33 chr12 101915493 101916221 -41870234 - Tigger3(Golem) DNA MER2_type 0 3029 2287 446 180 56 0 chr12 101916226 101916315 -41870140 - Tigger3(Golem) DNA MER2_type -2924 105 12 2390 157 57 9 chr12 101916521 101916961 -41869494 - LOR1b LTR ERV1 0 461 1 453 317 77 9 chr12 101918690 101919028 -41867427 - L1MC4 LINE L1 -547 7495 7135 5079 170 10 3 chr12 101919190 101920932 -41865523 - L1PA16 LINE L1 0 6869 5114 1127 173 9 13 chr12 101920925 101921150 -41865305 - L1PA16 LINE L1 -4413 2436 2213 * 2100 219 17 44 chr12 101921124 101921649 -41864806 - L1PA16 LINE L1 -6227 622 112 3635 173 33 10 chr12 101921682 101922370 -41864085 + MER39 LTR ERV1 1 704 -3 611 310 39 13 chr12 101923866 101924095 -41862360 + MLT1K LTR MaLR 11 245 -343 1800 164 76 9 chr12 101924402 101924744 -41861711 - MLT1A1 LTR MaLR 0 365 1 426 339 11 17 chr12 101924784 101924964 -41861491 + MIR3 SINE MIR 16 194 -14 21 0 0 0 chr12 101925120 101925141 -41861314 + AT_rich Low_complexity Low_complexity 1 21 0 264 213 0 0 chr12 101925298 101925359 -41861096 + T-rich Low_complexity Low_complexity 1 61 0 1822 190 0 3 chr12 101925805 101926100 -41860355 + AluJo SINE Alu 1 294 -18 288 254 0 0 chr12 101926409 101926472 -41859983 - MER2 DNA MER2_type 0 345 283 * 750 233 0 17 chr12 101926448 101926620 -41859835 - MER8 DNA MER2_type -60 179 11 416 296 0 0 chr12 101926936 101927044 -41859411 - L2 LINE L2 -18 3295 3188 271 333 13 0 chr12 101927204 101927279 -41859176 - MIR SINE MIR -61 147 72 2283 88 17 0 chr12 101927359 101927656 -41858799 + AluSq SINE Alu 1 302 -11 303 330 0 9 chr12 101928218 101928324 -41858131 + MIR3 SINE MIR 98 202 -6 212 339 61 9 chr12 101929531 101929646 -41856809 - L2 LINE L2 -3 3310 3190 895 243 155 70 chr12 101929738 101929919 -41856536 + MER39 LTR ERV1 1 165 -542 1814 164 73 14 chr12 101929919 101930273 -41856182 - THE1C LTR MaLR 0 375 1 895 243 155 70 chr12 101930273 101930582 -41855873 + MER39 LTR ERV1 165 707 0 1338 195 10 42 chr12 101930636 101930802 -41855653 + MLT1F LTR MaLR 245 398 -144 1634 192 42 99 chr12 101930802 101930903 -41855552 + MLT1C LTR MaLR 1 106 -361 2448 68 0 26 chr12 101930903 101931213 -41855242 + AluY SINE Alu 5 306 -5 1634 192 42 99 chr12 101931213 101931606 -41854849 + MLT1C LTR MaLR 106 467 0 1338 195 10 42 chr12 101931606 101931747 -41854708 + MLT1F LTR MaLR 398 542 0 806 47 23 23 chr12 101932103 101932232 -41854223 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 265 154 23 62 chr12 101932264 101932394 -41854061 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 200 340 0 21 chr12 101932395 101932492 -41853963 + GA-rich Low_complexity Low_complexity 2 96 0 2081 156 9 0 chr12 101933080 101933420 -41853035 + MER7A DNA MER2_type 1 341 -5 539 268 118 27 chr12 101935485 101935705 -41850750 + MIR SINE MIR 8 247 -15 282 255 19 9 chr12 101936710 101936816 -41849639 + (TA)n Simple_repeat Simple_repeat 1 107 0 200 273 61 15 chr12 101937520 101937586 -41848869 + L3 LINE CR1 335 403 -1174 404 276 133 15 chr12 101939957 101940182 -41846273 + MIR SINE MIR 3 250 -12 504 224 128 0 chr12 101940383 101940508 -41845947 - MER5B DNA MER1_type -29 149 9 2267 95 0 3 chr12 101941293 101941632 -41844823 + AluSq SINE Alu 1 313 0 198 0 0 0 chr12 101941892 101941914 -41844541 + (T)n Simple_repeat Simple_repeat 1 22 0 321 26 0 0 chr12 101942390 101942428 -41844027 + (GGGTG)n Simple_repeat Simple_repeat 3 40 0 487 279 26 47 chr12 101942621 101942811 -41843644 + MIR SINE MIR 18 203 -59 2278 254 146 30 chr12 101943186 101943425 -41843030 + L2 LINE L2 1962 2172 -1142 1662 178 34 17 chr12 101943425 101943545 -41842910 + AluJo SINE Alu 1 117 -195 246 32 0 0 chr12 101943545 101943576 -41842879 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1662 178 34 17 chr12 101943576 101943747 -41842708 + AluJo SINE Alu 117 297 -15 2278 254 146 30 chr12 101943747 101944403 -41842052 + L2 LINE L2 2172 2961 -353 306 257 75 79 chr12 101944615 101944752 -41841703 + MLT1L LTR MaLR 368 505 -110 1450 212 24 43 chr12 101944752 101944963 -41841492 - MLT1A1 LTR MaLR 0 365 162 1925 146 4 4 chr12 101944963 101945244 -41841211 - AluSc SINE Alu -18 291 11 1450 212 24 43 chr12 101945244 101945404 -41841051 - MLT1A1 LTR MaLR -203 162 1 306 257 75 79 chr12 101945404 101945507 -41840948 + MLT1L LTR MaLR 505 607 -8 23 0 0 0 chr12 101945770 101945793 -41840662 + AT_rich Low_complexity Low_complexity 1 23 0 1121 173 0 102 chr12 101945793 101946047 -41840408 - MER77 LTR ERV1 -223 382 155 1146 254 114 41 chr12 101946079 101946098 -41840357 + L2 LINE L2 2453 2469 -844 2898 94 53 2 chr12 101946098 101946511 -41839944 - MER57B LTR ERV1 0 434 1 1146 254 114 41 chr12 101946511 101947065 -41839390 + L2 LINE L2 2469 3097 -216 2848 3 0 3 chr12 101947065 101947377 -41839078 + AluYa5 SINE Alu 1 311 0 1146 254 114 41 chr12 101947377 101947602 -41838853 + L2 LINE L2 3097 3304 -9 2851 207 13 43 chr12 101947719 101948343 -41838112 + MER77 LTR ERV1 1 605 0 241 318 48 0 chr12 101948343 101948406 -41838049 + L2 LINE L2 3207 3272 0 848 176 0 14 chr12 101949363 101949505 -41836950 - FRAM SINE Alu -33 143 4 2027 103 4 4 chr12 101949614 101949886 -41836569 - AluSc SINE Alu -21 288 17 263 360 176 11 chr12 101950704 101951087 -41835368 - L2 LINE L2 -175 3097 2657 337 268 138 65 chr12 101951265 101951694 -41834761 + Charlie8 DNA MER1_type 73 532 -1885 240 310 0 14 chr12 101951764 101951835 -41834620 - L2 LINE L2 -213 3059 2990 328 304 0 33 chr12 101951984 101952076 -41834379 - L2 LINE L2 -3 3269 3181 31 68 0 0 chr12 101952110 101952169 -41834286 + AT_rich Low_complexity Low_complexity 1 59 0 252 232 101 20 chr12 101952211 101952310 -41834145 - MLT1L LTR MaLR -2 613 507 267 311 175 32 chr12 101952417 101952668 -41833787 - L2 LINE L2 -798 2516 2230 412 248 0 83 chr12 101952766 101952887 -41833568 + MLT1K LTR MaLR 110 220 -368 271 226 0 36 chr12 101953077 101953161 -41833294 + MLT1K LTR MaLR 508 588 0 278 281 108 49 chr12 101953165 101953350 -41833105 - L2 LINE L2 -1085 2229 2034 240 281 267 4 chr12 101953428 101953698 -41832757 - MLT1K LTR MaLR 0 588 248 2149 134 3 0 chr12 101954230 101954535 -41831920 - AluSx SINE Alu -6 306 1 27 0 0 0 chr12 101954638 101954665 -41831790 + AT_rich Low_complexity Low_complexity 1 27 0 731 189 8 0 chr12 101954666 101954798 -41831657 - FLAM_A SINE Alu 0 133 1 298 254 45 0 chr12 101955502 101955612 -41830843 + L1ME4a LINE L1 5976 6090 -31 497 327 155 23 chr12 101955923 101956440 -41830015 + MLT1K LTR MaLR 2 586 -2 3783 119 58 8 chr12 101956508 101957113 -41829342 + MER41B LTR ERV1 1 635 0 284 257 52 96 chr12 101957866 101958002 -41828453 - MER91B DNA MER1_type -60 130 1 536 323 77 6 chr12 101959468 101959806 -41826649 - L1MC4a LINE L1 -1905 5903 5542 332 340 85 13 chr12 101959900 101960053 -41826402 - MIR SINE MIR -71 191 28 860 275 31 9 chr12 101960064 101960293 -41826162 - MIR SINE MIR -12 250 17 2447 99 0 0 chr12 101961769 101962082 -41824373 + AluSq SINE Alu 1 313 0 204 40 0 0 chr12 101962355 101962380 -41824075 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 892 273 130 41 chr12 101962391 101963243 -41823212 - L2 LINE L2 -37 3276 2367 243 88 0 0 chr12 101964658 101964692 -41821763 + (T)n Simple_repeat Simple_repeat 1 34 0 236 130 22 0 chr12 101965554 101965600 -41820855 + (CA)n Simple_repeat Simple_repeat 2 48 0 921 188 0 18 chr12 101967869 101968034 -41818421 + FRAM SINE Alu 3 164 -2 212 255 0 0 chr12 101968241 101968288 -41818167 + MIR SINE MIR 216 262 0 441 0 0 0 chr12 101968336 101968385 -41818070 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr12 101968396 101968417 -41818038 + AT_rich Low_complexity Low_complexity 1 21 0 515 272 139 12 chr12 101968810 101968983 -41817472 - MIR SINE MIR -10 252 58 276 348 35 14 chr12 101968999 101969140 -41817315 - L2 LINE L2 -606 2708 2565 1671 219 31 54 chr12 101969591 101969624 -41816831 + MLT1D LTR MaLR 2 34 -471 1530 176 75 29 chr12 101969624 101969970 -41816485 - MLT1A1 LTR MaLR 0 365 4 1671 219 31 54 chr12 101969970 101970452 -41816003 + MLT1D LTR MaLR 34 505 0 716 240 0 13 chr12 101972378 101972528 -41813927 + MIR SINE MIR 23 170 -92 708 310 47 35 chr12 101972582 101972921 -41813534 + MLT1I LTR MaLR 67 409 0 1847 203 65 11 chr12 101973493 101973936 -41812519 - MLT1C LTR MaLR 0 467 1 434 258 54 54 chr12 101974773 101975033 -41811422 + L1M4b LINE L1 1377 1766 -5181 201 157 0 59 chr12 101975087 101975138 -41811317 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 389 260 125 51 chr12 101975175 101975806 -41810649 + L1M4b LINE L1 1805 2482 -4475 25 0 0 0 chr12 101976079 101976104 -41810351 + AT_rich Low_complexity Low_complexity 1 25 0 181 224 12 24 chr12 101977296 101977381 -41809074 + CT-rich Low_complexity Low_complexity 2 85 0 326 308 19 9 chr12 101977758 101977865 -41808590 - L2 LINE L2 -6 3307 3200 1905 196 23 25 chr12 101978134 101978532 -41807923 - MLT2C1 LTR ERVL 0 397 1 977 215 15 82 chr12 101978903 101979233 -41807222 - MSTD LTR MaLR 0 396 89 226 302 120 40 chr12 101979737 101979962 -41806493 + L2 LINE L2 2362 2604 -710 227 352 48 9 chr12 101980198 101980303 -41806152 + L2 LINE L2 2948 3056 -216 198 118 0 0 chr12 101981472 101981506 -41804949 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 728 226 53 26 chr12 101981587 101981777 -41804678 + MIR SINE MIR 34 228 -34 184 206 0 0 chr12 101981861 101981895 -41804560 + MIR SINE MIR 229 262 0 607 211 24 0 chr12 101981957 101982080 -41804375 - FLAM_A SINE Alu -4 138 13 211 309 128 37 chr12 101982728 101982916 -41803539 + L2 LINE L2 3109 3313 0 635 228 58 23 chr12 101983468 101983639 -41802816 + MER5B DNA MER1_type 1 177 -1 2436 89 0 0 chr12 101983816 101984129 -41802326 - AluSq SINE Alu 0 313 1 2124 135 3 3 chr12 101985470 101985782 -41800673 - AluSq SINE Alu -1 312 1 190 287 130 17 chr12 101986018 101986133 -41800322 + MIR SINE MIR 19 146 -62 286 183 49 12 chr12 101986314 101986396 -41800059 + L1ME4a LINE L1 6033 6117 -4 489 276 41 54 chr12 101987405 101987517 -41798938 + MER58A DNA MER1_type 3 115 -2305 2118 128 76 17 chr12 101987517 101987861 -41798594 - THE1B LTR MaLR 0 364 1 2115 107 4 0 chr12 101987871 101988171 -41798284 - AluSx SINE Alu 0 301 1 489 276 41 54 chr12 101988171 101988267 -41798188 + MER58A DNA MER1_type 124 220 -4 1666 179 14 17 chr12 101988387 101988683 -41797772 - AluJo SINE Alu -17 295 1 182 256 0 0 chr12 101989017 101989056 -41797399 - L2 LINE L2 -24 3248 3210 277 155 107 117 chr12 101989918 101990021 -41796434 + MIR SINE MIR 72 173 -89 883 289 12 16 chr12 101990307 101990560 -41795895 + MIR SINE MIR 9 260 -2 2090 136 17 0 chr12 101990717 101990738 -41795717 - AluSx SINE Alu -6 306 287 210 37 0 0 chr12 101990738 101990765 -41795690 + (TA)n Simple_repeat Simple_repeat 1 27 0 2090 136 17 0 chr12 101990765 101991044 -41795411 - AluSx SINE Alu -25 287 1 2374 67 0 55 chr12 101991335 101991662 -41794793 + AluY SINE Alu 1 309 -2 7529 25 0 0 chr12 101993073 101994108 -41792347 - L1PA3 LINE L1 -3 6152 5117 831 249 14 54 chr12 101994111 101994332 -41792123 - MIR SINE MIR -31 231 20 1035 145 78 0 chr12 101994793 101994986 -41791469 + MER3 DNA MER1_type 1 208 -1 482 200 76 0 chr12 101995086 101995191 -41791264 + MER81 DNA DNA 2 114 0 610 241 123 0 chr12 101996980 101997142 -41789313 - MIR SINE MIR -80 182 1 1602 181 0 11 chr12 101997630 101997906 -41788549 + AluSx SINE Alu 33 305 -7 34 42 0 0 chr12 101998315 101998363 -41788092 + AT_rich Low_complexity Low_complexity 1 48 0 363 204 43 43 chr12 101998363 101998456 -41787999 - L1MC4 LINE L1 -1336 6706 6614 207 344 0 21 chr12 101999578 101999674 -41786781 + MIR3 SINE MIR 110 203 -5 4650 145 8 5 chr12 101999755 102000526 -41785929 - L1MC1 LINE L1 -6 6327 5555 14171 187 12 16 chr12 102000595 102006067 -41780388 + L1PB1 LINE L1 1392 6866 -1 2038 184 5 14 chr12 102006080 102006786 -41779669 - L1MC1 LINE L1 -753 5393 4852 1656 174 55 44 chr12 102006829 102007190 -41779265 + MLT1A1 LTR MaLR 1 365 0 546 299 0 7 chr12 102007458 102007602 -41778853 - MIR SINE MIR -90 172 30 2274 81 3 3 chr12 102009071 102009369 -41777086 + AluSc SINE Alu 1 298 -11 2355 86 0 3 chr12 102009497 102009798 -41776657 + AluY SINE Alu 1 300 -11 560 285 59 5 chr12 102009817 102010003 -41776452 - MIR SINE MIR -14 248 53 2378 245 45 6 chr12 102010010 102010656 -41775799 - L1MEc LINE L1 -5582 814 144 648 238 44 101 chr12 102011358 102011512 -41774943 + MIR SINE MIR 2 138 -124 1224 111 0 11 chr12 102011512 102011701 -41774754 + L1PA13 LINE L1 5965 6151 -12 648 238 44 101 chr12 102011701 102011794 -41774661 + MIR SINE MIR 138 235 -27 22 0 0 0 chr12 102011918 102011940 -41774515 + AT_rich Low_complexity Low_complexity 1 22 0 1881 167 3 0 chr12 102011973 102012272 -41774183 - AluSx SINE Alu 0 312 13 22 35 0 0 chr12 102012553 102012582 -41773873 + AT_rich Low_complexity Low_complexity 1 29 0 402 261 22 51 chr12 102013281 102013419 -41773036 - L3 LINE CR1 -1102 475 342 342 0 0 0 chr12 102013820 102013858 -41772597 + (A)n Simple_repeat Simple_repeat 1 38 0 592 225 143 11 chr12 102014650 102014972 -41771483 - LTR33A LTR ERVL -2 521 81 2085 148 0 3 chr12 102015614 102015918 -41770537 + AluJb SINE Alu 1 303 -9 270 0 0 0 chr12 102015977 102016007 -41770448 + (TG)n Simple_repeat Simple_repeat 2 31 0 1400 236 25 28 chr12 102017803 102018167 -41768288 - MLT1A1 LTR MaLR -2 363 1 4424 150 23 0 chr12 102018291 102019025 -41767430 + Tigger1 DNA MER2_type 24 774 -1644 227 346 13 0 chr12 102019159 102019237 -41767218 - L2 LINE L2 -238 3034 2956 355 287 51 8 chr12 102019919 102020055 -41766400 - MIR SINE MIR -62 146 15 993 303 149 41 chr12 102021254 102022316 -41764139 + L2 LINE L2 1383 2558 -756 493 248 148 38 chr12 102022279 102022489 -41763966 - L2 LINE L2 -1 3312 3080 * 682 313 82 61 chr12 102022474 102023194 -41763261 - L2 LINE L2 -731 2583 1849 2205 120 48 28 chr12 102023314 102023671 -41762784 + THE1B LTR MaLR 1 364 0 2650 93 27 0 chr12 102024051 102024416 -41762039 - THE1C LTR MaLR 0 375 1 593 221 85 48 chr12 102024596 102024816 -41761639 + MIR SINE MIR 37 262 0 198 314 0 0 chr12 102024829 102024880 -41761575 + MIR SINE MIR 203 253 -9 326 293 109 14 chr12 102025758 102025905 -41760550 - MIR3 SINE MIR -5 203 43 285 305 0 44 chr12 102025903 102026004 -41760451 + MER5A DNA MER1_type 81 165 -13 * 448 372 62 0 chr12 102026567 102026793 -41759662 + L2 LINE L2 2234 2473 -841 389 307 163 19 chr12 102026806 102027076 -41759379 - MLT1K LTR MaLR -17 571 263 282 250 10 87 chr12 102027193 102027297 -41759158 - MLT1K LTR MaLR -482 106 11 493 291 135 59 chr12 102027656 102027893 -41758562 - MIR SINE MIR -6 256 2 241 340 21 11 chr12 102027971 102028065 -41758390 + L2 LINE L2 2986 3080 -192 308 330 36 18 chr12 102028323 102028435 -41758020 + MIR SINE MIR 8 121 -141 288 182 182 25 chr12 102028542 102028663 -41757792 + L1ME4a LINE L1 5968 6107 -14 795 296 21 33 chr12 102029552 102029792 -41756663 + MIR SINE MIR 26 262 0 2089 140 0 7 chr12 102029918 102030218 -41756237 + AluSq SINE Alu 1 298 -15 348 344 149 9 chr12 102030338 102030553 -41755902 + MIR SINE MIR 5 249 -13 2073 143 3 10 chr12 102031062 102031376 -41755079 - AluSx SINE Alu 0 312 1 26 74 0 0 chr12 102033425 102033479 -41752976 + AT_rich Low_complexity Low_complexity 1 54 0 2708 23 0 0 chr12 102033755 102034061 -41752394 + AluY SINE Alu 1 306 -5 212 184 20 0 chr12 102034098 102034147 -41752308 + (TA)n Simple_repeat Simple_repeat 2 51 0 300 239 28 55 chr12 102034150 102034259 -41752196 + L1MC4a LINE L1 2005 2110 -4316 375 242 36 65 chr12 102034323 102034622 -41751833 + HAL1b LINE L1 168 1541 -923 307 311 73 29 chr12 102034906 102034960 -41751495 + L1MC4a LINE L1 2332 2382 -4225 1091 174 0 0 chr12 102034960 102035127 -41751328 + FAM SINE Alu 1 167 -8 307 311 73 29 chr12 102035127 102035278 -41751177 + L1MC4a LINE L1 2382 2546 -4061 1128 59 0 0 chr12 102035446 102035582 -41750873 + AluY SINE Alu 161 296 -15 1730 146 78 63 chr12 102035794 102036177 -41750278 + MLT1B LTR MaLR 1 389 -1 303 28 0 0 chr12 102036219 102036255 -41750200 + (TG)n Simple_repeat Simple_repeat 1 36 0 357 260 20 0 chr12 102036667 102036767 -41749688 - MER20 DNA MER1_type 0 219 118 1226 145 10 0 chr12 102037421 102037628 -41748827 - MER2 DNA MER2_type -135 210 2 445 323 112 58 chr12 102037654 102038634 -41747821 + L1MC4a LINE L1 5140 5679 -747 244 232 36 29 chr12 102038695 102038759 -41747696 + (TA)n Simple_repeat Simple_repeat 1 63 -76 8222 125 20 2 chr12 102038759 102040035 -41746420 + HSMAR2 DNA Mariner 4 1301 -1 244 232 36 29 chr12 102040035 102040108 -41746347 + (TA)n Simple_repeat Simple_repeat 63 139 0 24 0 0 0 chr12 102040165 102040189 -41746266 + AT_rich Low_complexity Low_complexity 1 24 0 414 171 24 0 chr12 102040227 102040309 -41746146 + HsTC2 DNA Tc2 2 85 -1813 1232 109 20 40 chr12 102041074 102041275 -41745180 - AluSg/x SINE Alu -3 306 110 243 128 0 0 chr12 102041507 102041554 -41744901 - AluJo SINE Alu 0 301 255 1072 230 5 5 chr12 102041554 102041763 -41744692 - AluJo SINE Alu -101 211 3 669 225 243 7 chr12 102041788 102042064 -41744391 - MLT1A2 LTR MaLR 0 374 25 2373 103 0 0 chr12 102042739 102043041 -41743414 + AluSq SINE Alu 1 302 -11 27 0 0 0 chr12 102043199 102043226 -41743229 + AT_rich Low_complexity Low_complexity 1 27 0 343 326 170 14 chr12 102043350 102043497 -41742958 + MER91A DNA MER1_type 1 170 -26 1207 234 80 19 chr12 102043537 102044048 -41742407 + MLT1G LTR MaLR 1 590 0 204 234 43 0 chr12 102044062 102044109 -41742346 + MER91A DNA MER1_type 148 196 0 301 277 35 21 chr12 102044230 102044371 -41742084 + L2 LINE L2 2855 2997 -275 232 240 170 20 chr12 102047701 102047801 -41738654 + MIR SINE MIR 139 253 -9 359 282 139 33 chr12 102049131 102049468 -41736987 + HAL1b LINE L1 331 703 -645 381 341 84 65 chr12 102050235 102050748 -41735707 - L2 LINE L2 -185 3087 2502 1269 219 67 30 chr12 102050754 102051258 -41735197 - MLT1E LTR MaLR 0 593 10 334 323 83 38 chr12 102051282 102051548 -41734907 - L2 LINE L2 -882 2432 2155 508 238 0 0 chr12 102051607 102051708 -41734747 + MER5B DNA MER1_type 78 178 0 242 307 100 0 chr12 102051725 102051865 -41734590 + L1ME4a LINE L1 5964 6117 -4 2447 91 120 5 chr12 102052029 102052413 -41734042 + MSTA LTR MaLR 1 428 0 757 271 19 0 chr12 102052451 102052665 -41733790 + L1ME LINE L1 5518 5735 -386 5851 123 126 14 chr12 102052866 102053894 -41732561 - Tigger3b DNA MER2_type -1797 1231 69 2166 128 100 28 chr12 102053894 102054293 -41732162 + MSTA LTR MaLR 1 428 0 5851 123 126 14 chr12 102054293 102054371 -41732084 - Tigger3b DNA MER2_type -2959 69 1 822 112 0 0 chr12 102055184 102055309 -41731146 - L1MA8 LINE L1 -3 6288 6164 265 143 0 0 chr12 102056005 102056047 -41730408 - MLT1K LTR MaLR -346 242 201 871 119 57 17 chr12 102056944 102057120 -41729335 + MER53 DNA DNA 5 187 -2 28 29 0 0 chr12 102057213 102057248 -41729207 + AT_rich Low_complexity Low_complexity 1 35 0 599 239 19 72 chr12 102057966 102058229 -41728226 + L1MC5 LINE L1 6973 7221 -740 320 339 29 17 chr12 102058229 102058403 -41728052 + L1MC4a LINE L1 7238 7413 -395 218 364 68 17 chr12 102061215 102061333 -41725122 - L2 LINE L2 -8 3264 3141 386 314 51 97 chr12 102061447 102061590 -41724865 - L2 LINE L2 -338 2976 2828 677 196 156 60 chr12 102061590 102061789 -41724666 - MER20 DNA MER1_type 0 219 2 386 314 51 97 chr12 102061789 102061883 -41724572 - L2 LINE L2 -486 2828 2731 1058 151 11 0 chr12 102061883 102062062 -41724393 + L1PB4 LINE L1 5964 6144 -12 386 314 51 97 chr12 102062062 102062276 -41724179 - L2 LINE L2 -583 2731 2545 209 211 0 58 chr12 102064349 102064401 -41722054 + L2 LINE L2 1875 1923 -1391 1460 86 9 27 chr12 102064426 102064648 -41721807 - L1PB2 LINE L1 0 6151 5934 1548 106 8 16 chr12 102064732 102064986 -41721469 - L1PB2 LINE L1 -232 5919 5668 270 254 54 78 chr12 102065010 102065089 -41721366 - HAL1 LINE L1 -1322 1185 1106 2435 97 0 0 chr12 102065089 102065400 -41721055 - AluSp SINE Alu -2 311 1 270 254 54 78 chr12 102065400 102065525 -41720930 - HAL1 LINE L1 -1401 1106 986 482 310 78 92 chr12 102066332 102066447 -41720008 - HAL1b LINE L1 -739 609 494 2241 92 3 0 chr12 102066447 102066762 -41719693 - AluY SINE Alu 0 311 1 482 310 78 92 chr12 102066762 102067208 -41719247 - HAL1b LINE L1 -854 494 56 846 230 127 25 chr12 102067635 102068167 -41718288 + MLT1G3 LTR MaLR 1 555 0 236 281 0 18 chr12 102070153 102070210 -41716245 - MER5A DNA MER1_type -66 123 68 304 322 93 0 chr12 102070541 102070659 -41715796 - MIR3 SINE MIR -53 155 27 1951 126 0 4 chr12 102071014 102071284 -41715171 - AluSx SINE Alu -1 311 43 379 199 96 22 chr12 102071548 102071684 -41714771 - L1ME3A LINE L1 -219 5951 5806 440 204 19 46 chr12 102071747 102071855 -41714600 - L2 LINE L2 -26 3287 3183 201 217 22 22 chr12 102071999 102072045 -41714410 + MER5B DNA MER1_type 1 46 -132 198 267 117 17 chr12 102072537 102072597 -41713858 - MIR SINE MIR -165 97 32 * 468 324 11 11 chr12 102072564 102072746 -41713709 + MIR SINE MIR 27 208 -54 281 335 125 28 chr12 102072826 102073250 -41713205 + L2 LINE L2 2399 2863 -451 29 0 0 0 chr12 102073267 102073296 -41713159 + AT_rich Low_complexity Low_complexity 1 29 0 532 160 10 24 chr12 102074733 102074856 -41711599 + MSTC LTR MaLR 1 130 -235 460 172 0 21 chr12 102075147 102075240 -41711215 - AluJ/FRAM SINE Alu 0 312 222 424 317 7 14 chr12 102075299 102075441 -41711014 + L2 LINE L2 3168 3308 -5 387 345 156 12 chr12 102076141 102076298 -41710157 + L2 LINE L2 2297 2430 -884 1838 121 110 7 chr12 102076298 102076579 -41709876 - AluSg SINE Alu 0 310 1 387 345 156 12 chr12 102076579 102076916 -41709539 + L2 LINE L2 2430 2862 -452 481 266 0 0 chr12 102077260 102077369 -41709086 - MIR SINE MIR 0 262 154 1653 193 75 57 chr12 102077369 102077922 -41708533 + MER34B LTR ERV1 11 564 -1 435 204 146 22 chr12 102077922 102078059 -41708396 - MIR SINE MIR -105 157 4 251 349 40 16 chr12 102078412 102078538 -41707917 + L2 LINE L2 2853 2981 -332 278 318 56 24 chr12 102078857 102078950 -41707505 + L2 LINE L2 3179 3278 -35 950 157 70 43 chr12 102078950 102079180 -41707275 - MER46A DNA MER2_type 0 236 1 278 318 56 24 chr12 102079180 102079212 -41707243 + L2 LINE L2 3278 3308 -5 991 261 78 44 chr12 102079248 102079893 -41706562 + L2 LINE L2 2544 3214 -99 270 253 189 0 chr12 102079961 102080056 -41706399 + MIR3 SINE MIR 55 167 -41 202 291 58 35 chr12 102080696 102080782 -41705673 - L2 LINE L2 -36 3277 3190 343 333 201 18 chr12 102081555 102081939 -41704516 - L2 LINE L2 -3 3269 2816 673 279 90 21 chr12 102081946 102082179 -41704276 - MIR SINE MIR 0 262 14 232 338 22 43 chr12 102082183 102082322 -41704133 - L2 LINE L2 -498 2816 2681 521 184 28 28 chr12 102084719 102084828 -41701627 + MER5B DNA MER1_type 70 178 0 183 206 0 143 chr12 102084828 102084889 -41701566 + L3 LINE CR1 1526 1577 0 24 32 0 0 chr12 102086283 102086314 -41700141 + AT_rich Low_complexity Low_complexity 1 31 0 247 305 0 0 chr12 102086339 102086398 -41700057 + polypurine Low_complexity Low_complexity 1 59 0 467 33 16 0 chr12 102088670 102088731 -41697724 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 1890 137 0 25 chr12 102088733 102089017 -41697438 - AluSx SINE Alu -31 281 5 322 335 49 27 chr12 102089477 102089662 -41696793 - MIR SINE MIR -54 208 20 285 266 109 39 chr12 102090036 102090164 -41696291 + MER5A DNA MER1_type 7 143 -46 210 289 0 0 chr12 102090919 102090964 -41695491 + MER5B DNA MER1_type 6 50 -128 747 251 0 5 chr12 102090964 102091187 -41695268 - L1ME LINE L1 -3802 2842 2621 1609 258 65 57 chr12 102091239 102092274 -41694181 - L1ME LINE L1 -4131 2694 1668 372 59 0 0 chr12 102092274 102092325 -41694130 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 2196 106 14 0 chr12 102092325 102092607 -41693848 - AluSx SINE Alu -26 286 1 1609 258 65 57 chr12 102092607 102093152 -41693303 - L1ME LINE L1 -5156 1669 1016 236 319 69 14 chr12 102093252 102093396 -41693059 - L1ME LINE L1 -5671 871 720 21 36 0 0 chr12 102093912 102093940 -41692515 + AT_rich Low_complexity Low_complexity 1 28 0 189 323 0 31 chr12 102094110 102094175 -41692280 + MIR SINE MIR 37 99 -109 565 274 29 61 chr12 102094597 102094842 -41691613 - MLT1J1 LTR MaLR -8 438 202 779 275 178 35 chr12 102095151 102095606 -41690849 + MLT1K LTR MaLR 69 588 0 295 297 33 0 chr12 102095776 102095867 -41690588 - MIR SINE MIR -136 126 33 611 226 58 53 chr12 102095869 102096004 -41690451 - MER3 DNA MER1_type 0 209 71 2224 147 3 3 chr12 102096004 102096338 -41690117 - MER1B DNA MER1_type 0 337 4 611 226 58 53 chr12 102096338 102096410 -41690045 - MER3 DNA MER1_type -138 71 1 378 0 0 0 chr12 102096422 102096464 -41689991 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 102097333 102097354 -41689101 + AT_rich Low_complexity Low_complexity 1 21 0 341 286 76 43 chr12 102098818 102099003 -41687452 + MIR SINE MIR 69 259 -3 415 312 188 7 chr12 102099434 102099588 -41686867 - MIR SINE MIR 0 262 81 202 260 182 0 chr12 102100209 102100286 -41686169 - L2 LINE L2 -8 3264 3174 442 295 52 6 chr12 102101319 102101492 -41684963 + MER117 DNA MER1_type 2 182 -15 333 0 0 0 chr12 102102107 102102144 -41684311 + (TTA)n Simple_repeat Simple_repeat 1 37 0 626 323 75 33 chr12 102102259 102102618 -41683837 - L2 LINE L2 -937 2377 2004 212 326 35 12 chr12 102103017 102103103 -41683352 + MIR SINE MIR 66 153 -109 244 389 28 19 chr12 102103597 102103808 -41682647 + L2 LINE L2 2285 2497 -817 225 318 12 103 chr12 102103868 102104040 -41682415 - MIR SINE MIR -12 250 105 1440 208 32 48 chr12 102104040 102104419 -41682036 + MLT1A2 LTR MaLR 2 374 0 225 318 12 103 chr12 102104419 102104488 -41681967 - MIR SINE MIR -157 105 31 191 341 58 35 chr12 102104533 102104706 -41681749 + L2 LINE L2 2580 2756 -558 269 245 157 10 chr12 102104849 102104951 -41681504 + L2 LINE L2 3197 3313 0 1191 279 56 35 chr12 102105246 102105729 -41680726 + MLT1J LTR MaLR 1 493 -18 2119 131 0 23 chr12 102105910 102106215 -41680240 + AluSx SINE Alu 1 298 -14 2345 51 3 3 chr12 102106470 102106766 -41679689 + L1PA7 LINE L1 5849 6144 -10 368 185 31 108 chr12 102108224 102108354 -41678101 - MER103 DNA DNA -1 165 46 202 365 132 12 chr12 102108660 102108827 -41677628 - L2 LINE L2 -220 3052 2866 2016 128 33 0 chr12 102109415 102109744 -41676711 + MER46B DNA MER2_type 1 215 -21 1243 296 36 14 chr12 102110560 102111000 -41675455 + MLT1J2 LTR MaLR 1 450 0 262 325 185 7 chr12 102111687 102111838 -41674617 + MIR SINE MIR 17 194 -68 195 42 0 0 chr12 102114035 102114059 -41672396 + (CA)n Simple_repeat Simple_repeat 2 25 0 902 156 43 76 chr12 102115555 102115766 -41670689 - MER20 DNA MER1_type -15 204 1 21 0 0 0 chr12 102117813 102117834 -41668621 + AT_rich Low_complexity Low_complexity 1 21 0 251 295 107 16 chr12 102119087 102119209 -41667246 - L3 LINE CR1 -5 1572 1440 30 27 0 0 chr12 102120950 102120987 -41665468 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr12 102121027 102121056 -41665399 + AT_rich Low_complexity Low_complexity 1 29 0 249 33 0 0 chr12 102121141 102121171 -41665284 + (A)n Simple_repeat Simple_repeat 1 30 0 220 282 0 28 chr12 102122831 102122902 -41663553 + MIR SINE MIR 93 161 -101 292 320 16 31 chr12 102122937 102123065 -41663390 - L2 LINE L2 0 3313 3188 241 268 49 24 chr12 102123219 102123301 -41663154 + L2 LINE L2 3228 3311 -2 1164 282 67 33 chr12 102123883 102124275 -41662180 - MLT1E LTR MaLR -1 592 215 1032 108 0 0 chr12 102124275 102124433 -41662022 - L1PA10 LINE L1 0 6168 6011 1164 282 67 33 chr12 102124433 102124563 -41661892 - MLT1E LTR MaLR -378 215 59 1283 203 71 47 chr12 102124563 102124928 -41661527 - MLT1A2 LTR MaLR 0 374 1 1164 282 67 33 chr12 102124928 102124990 -41661465 - MLT1E LTR MaLR -534 59 1 446 280 134 5 chr12 102125322 102125508 -41660947 + MIR SINE MIR 28 237 -25 2256 198 77 0 chr12 102126040 102126509 -41659946 - MLT1D LTR MaLR 0 505 1 781 302 81 0 chr12 102127823 102128058 -41658397 - MIR SINE MIR 0 262 9 513 259 30 15 chr12 102128552 102128687 -41657768 + MLT1K LTR MaLR 133 269 -319 723 81 0 0 chr12 102128713 102128812 -41657643 + HY3 scRNA scRNA 1 99 -2 550 256 126 20 chr12 102129207 102129406 -41657049 + MER46C DNA MER2_type 14 233 -105 1406 215 0 26 chr12 102129412 102129548 -41656907 + AluJb SINE Alu 1 139 -173 2821 10 0 0 chr12 102129548 102129857 -41656598 + AluYa5 SINE Alu 1 309 -2 1406 215 0 26 chr12 102129857 102130022 -41656433 + AluJb SINE Alu 139 294 -18 2274 93 0 10 chr12 102130515 102130816 -41655639 + AluSx SINE Alu 1 298 -14 197 318 16 16 chr12 102131043 102131106 -41655349 + L2 LINE L2 3250 3312 -1 360 77 0 0 chr12 102131450 102131502 -41654953 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 36 0 0 chr12 102131529 102131557 -41654898 + AT_rich Low_complexity Low_complexity 1 28 0 323 360 47 9 chr12 102132022 102132236 -41654219 + L2 LINE L2 2015 2236 -1078 4769 174 25 14 chr12 102132243 102133574 -41652881 - L1MB5 LINE L1 0 6174 4833 348 295 204 32 chr12 102133594 102134031 -41652424 + L2 LINE L2 2254 2765 -549 273 293 28 52 chr12 102134061 102134249 -41652206 + L2 LINE L2 2732 3040 -232 324 293 106 106 chr12 102134615 102135048 -41651407 - L2 LINE L2 0 3272 2840 1370 242 62 96 chr12 102135207 102135819 -41650636 + MLT1E LTR MaLR 3 593 0 332 340 112 27 chr12 102137115 102137409 -41649046 + L2 LINE L2 2580 2898 -416 199 326 111 33 chr12 102138844 102139025 -41647430 - L2 LINE L2 -267 3005 2811 209 414 25 13 chr12 102139062 102139219 -41647236 - L2 LINE L2 -604 2710 2552 786 246 31 102 chr12 102139283 102139636 -41646819 - MLT1H LTR MaLR -193 356 29 288 261 59 8 chr12 102139874 102139993 -41646462 + L1MEc LINE L1 1538 1662 -4734 250 200 32 21 chr12 102140357 102140452 -41646003 + (TA)n Simple_repeat Simple_repeat 2 97 0 23 0 0 0 chr12 102140474 102140497 -41645958 + AT_rich Low_complexity Low_complexity 1 23 0 420 224 242 57 chr12 102141202 102141483 -41644972 + L1M4 LINE L1 3653 3985 -2161 830 237 81 49 chr12 102141485 102141872 -41644583 - L1MEc LINE L1 -3555 2415 2044 2230 108 0 6 chr12 102141872 102142186 -41644269 - AluSx SINE Alu 0 312 1 830 237 81 49 chr12 102142186 102142294 -41644161 - L1MEc LINE L1 -3926 2044 1941 2149 105 10 10 chr12 102142295 102142599 -41643856 - AluSq SINE Alu -9 304 1 8664 230 113 15 chr12 102142624 102144999 -41641456 - L1M3d LINE L1 -1013 4957 2287 336 24 0 0 chr12 102144999 102145040 -41641415 + (TTG)n Simple_repeat Simple_repeat 2 42 0 8664 230 113 15 chr12 102145040 102145358 -41641097 - L1M3d LINE L1 -3683 2287 2002 873 167 0 7 chr12 102145377 102145515 -41640940 - FAM SINE Alu -18 167 31 3524 231 95 27 chr12 102145519 102145793 -41640662 - L1M3d LINE L1 -3961 2010 1756 831 92 15 0 chr12 102145793 102145923 -41640532 - L1MB1 LINE L1 -1 6167 6036 3524 231 95 27 chr12 102145923 102147136 -41639319 - L1M3d LINE L1 -4215 1756 388 1020 302 41 20 chr12 102147322 102147716 -41638739 - L1M3d LINE L1 -5489 402 1 659 181 174 7 chr12 102147721 102147876 -41638579 + MER90 LTR ERV1 420 600 -14 431 195 89 8 chr12 102150301 102150360 -41636095 - L1MA10 LINE L1 -30 6304 6246 2479 226 58 20 chr12 102150360 102151056 -41635399 - L1ME1 LINE L1 -89 6471 5750 921 165 63 0 chr12 102151056 102151214 -41635241 - FRAM SINE Alu -9 167 1 4584 219 96 41 chr12 102151216 102152963 -41633492 - L1ME1 LINE L1 -783 5757 3914 310 265 103 0 chr12 102152975 102153092 -41633363 - L1ME1 LINE L1 -2816 3724 3596 740 169 15 0 chr12 102153100 102153230 -41633225 + FLAM_C SINE Alu 7 138 -5 302 307 10 10 chr12 102153230 102153331 -41633124 - L1ME1 LINE L1 -2981 3559 3459 804 186 31 25 chr12 102153337 102153498 -41632957 + FRAM SINE Alu 1 162 -14 604 184 29 0 chr12 102153498 102153634 -41632821 - L1ME1 LINE L1 -3076 3464 3325 1862 248 125 17 chr12 102153712 102154533 -41631922 - L1ME1 LINE L1 -3985 2595 1619 25 31 0 0 chr12 102156101 102156133 -41630322 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr12 102156809 102156833 -41629622 + AT_rich Low_complexity Low_complexity 1 24 0 663 237 79 66 chr12 102157027 102157255 -41629200 - MIR SINE MIR 0 262 32 481 262 200 10 chr12 102157829 102158251 -41628204 - L1ME LINE L1 -390 5772 5262 478 288 75 17 chr12 102158522 102158883 -41627572 - L1ME LINE L1 -1222 4924 4543 810 290 73 38 chr12 102159710 102160106 -41626349 + L1MCc LINE L1 23 432 -5991 549 304 62 26 chr12 102160488 102160715 -41625740 - MIR SINE MIR -8 254 20 2198 122 0 0 chr12 102160814 102161109 -41625346 - AluSx SINE Alu -17 295 1 2903 107 139 48 chr12 102161276 102161721 -41624734 - L1MA7 LINE L1 -1 6290 5782 2444 87 0 0 chr12 102161721 102162031 -41624424 - AluSg SINE Alu 0 310 1 2903 107 139 48 chr12 102162031 102162146 -41624309 - L1MA7 LINE L1 -509 5782 5679 21 36 0 0 chr12 102163906 102163934 -41622521 + AT_rich Low_complexity Low_complexity 1 28 0 440 328 106 6 chr12 102164090 102164270 -41622185 - L2 LINE L2 0 3272 3075 2232 126 39 17 chr12 102164300 102164656 -41621799 - THE1B LTR MaLR 0 364 1 507 186 10 10 chr12 102164872 102164974 -41621481 - MER5A DNA MER1_type -84 105 4 22 35 0 0 chr12 102165042 102165071 -41621384 + AT_rich Low_complexity Low_complexity 1 29 0 525 234 124 0 chr12 102165758 102165895 -41620560 + MIR SINE MIR 44 197 -65 223 292 105 78 chr12 102166108 102166327 -41620128 - L2 LINE L2 -107 3165 2941 1050 218 24 4 chr12 102166348 102166596 -41619859 - L1MB7 LINE L1 -22 6162 5910 1137 134 0 0 chr12 102166609 102166766 -41619689 - AluSg/x SINE Alu -23 287 131 4321 187 50 38 chr12 102166781 102168533 -41617922 - L1MB7 LINE L1 -278 5900 4111 25 0 0 0 chr12 102169293 102169318 -41617137 + AT_rich Low_complexity Low_complexity 1 25 0 1904 163 0 0 chr12 102169566 102169849 -41616606 + AluSx SINE Alu 5 287 -25 248 272 204 32 chr12 102169862 102170141 -41616314 - L1ME4a LINE L1 0 6121 5795 1939 162 7 0 chr12 102170406 102170708 -41615747 + AluJb SINE Alu 1 304 -8 438 297 110 37 chr12 102171558 102171831 -41614624 + L2 LINE L2 3021 3313 0 305 270 0 0 chr12 102171978 102172041 -41614414 - L2 LINE L2 -5 3308 3246 313 298 94 80 chr12 102172918 102173257 -41613198 - MLT1I LTR MaLR -45 364 21 282 203 17 0 chr12 102173355 102173414 -41613041 + MER117 DNA MER1_type 109 168 -29 2182 137 0 0 chr12 102174104 102174411 -41612044 + AluSx SINE Alu 1 307 -5 1957 128 0 17 chr12 102174436 102174780 -41611675 + AluSx SINE Alu 1 339 0 1381 146 139 15 chr12 102175442 102175716 -41610739 - LTR18B LTR ERVL 0 614 307 856 189 10 46 chr12 102175704 102175900 -41610555 - LTR18B LTR ERVL -425 189 1 * 282 73 0 0 chr12 102176254 102176295 -41610160 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 315 167 31 chr12 102176788 102176950 -41609505 - MIR SINE MIR -71 191 8 344 343 109 37 chr12 102177054 102177404 -41609051 + L1MEd LINE L1 46 420 -5699 2444 62 0 0 chr12 102177438 102177744 -41608711 + AluY SINE Alu 3 308 -3 1907 167 96 50 chr12 102178283 102178657 -41607798 - MLT1D LTR MaLR -2 503 101 2074 79 32 85 chr12 102178657 102178973 -41607482 - AluSq SINE Alu -12 301 3 1907 167 96 50 chr12 102178973 102179077 -41607378 - MLT1D LTR MaLR -404 101 3 1059 289 61 30 chr12 102179657 102180183 -41606272 - L1MC4a LINE L1 -1884 5924 5383 478 311 140 20 chr12 102180529 102180928 -41605527 - L1MC4a LINE L1 -1315 4831 4385 1388 188 29 49 chr12 102181041 102181213 -41605242 - MER58B DNA MER1_type -2081 339 176 2092 115 0 24 chr12 102181213 102181509 -41604946 + AluSg SINE Alu 1 289 -21 1388 188 29 49 chr12 102181509 102181682 -41604773 - MER58B DNA MER1_type -2244 176 1 348 283 97 16 chr12 102181721 102182092 -41604363 - L1MC4a LINE L1 -3632 2514 2114 6128 163 109 104 chr12 102182428 102183412 -41603043 - Charlie1 DNA MER1_type -108 2653 1654 2385 73 3 10 chr12 102183412 102183714 -41602741 - AluSp SINE Alu -13 300 1 6128 163 109 104 chr12 102183714 102184540 -41601915 - Charlie1 DNA MER1_type -1107 1654 834 894 195 124 55 chr12 102184847 102184891 -41601564 - L1ME3A LINE L1 -9 6161 6121 2249 110 3 0 chr12 102184891 102185191 -41601264 + AluSq SINE Alu 1 301 -12 894 195 124 55 chr12 102185191 102185637 -41600818 - L1ME3A LINE L1 -49 6121 5580 222 177 16 16 chr12 102185694 102185756 -41600699 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 743 301 59 18 chr12 102186010 102186555 -41599900 - L1ME3A LINE L1 -748 5398 4832 700 311 98 22 chr12 102186558 102187147 -41599308 + HAL1 LINE L1 1162 1795 -712 244 180 0 0 chr12 102187604 102187654 -41598801 + HAL1b LINE L1 748 797 -551 1147 278 157 13 chr12 102188033 102188861 -41597594 + L1ME3A LINE L1 3758 4704 -1442 751 296 45 54 chr12 102188859 102189193 -41597262 + L1ME3A LINE L1 5621 5951 -219 * 2353 95 3 0 chr12 102189670 102189974 -41596481 + AluSp SINE Alu 1 305 -8 266 188 169 28 chr12 102189983 102190092 -41596363 - MIR SINE MIR -78 130 19 445 307 98 35 chr12 102190213 102190530 -41595925 - L1ME LINE L1 -536 5684 5349 323 261 52 30 chr12 102190574 102190708 -41595747 - L1ME LINE L1 -904 5311 5175 470 211 0 28 chr12 102191128 102191237 -41595218 + Charlie4 DNA MER1_type 1822 1927 -34 664 307 108 46 chr12 102191736 102192173 -41594282 + LTR16C LTR ERVL 20 483 -8 1958 125 57 7 chr12 102192249 102192546 -41593909 - AluSx SINE Alu 0 312 1 258 336 84 17 chr12 102193688 102193807 -41592648 - L2 LINE L2 -8 3264 3138 846 109 0 29 chr12 102193972 102194109 -41592346 - AluSg/x SINE Alu -6 304 172 185 264 0 38 chr12 102194417 102194470 -41591985 + L2 LINE L2 3263 3313 0 23 33 0 0 chr12 102194716 102194746 -41591709 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 102196695 102196730 -41589725 + AT_rich Low_complexity Low_complexity 1 35 0 660 59 0 0 chr12 102197250 102197335 -41589120 - AluSg/x SINE Alu -12 300 216 2392 84 0 7 chr12 102197907 102198215 -41588240 - AluSg SINE Alu -4 306 1 596 259 181 9 chr12 102198759 102199091 -41587364 - L1ME LINE L1 -2060 4155 3767 6234 69 21 27 chr12 102199121 102200014 -41586441 - L1PB1 LINE L1 0 6151 5264 * 14576 113 109 6 chr12 102200012 102202361 -41584094 - L1PBa LINE L1 -4268 2595 5 399 311 0 26 chr12 102202377 102202567 -41583888 - L1ME LINE L1 -2459 3756 3572 1381 273 65 55 chr12 102202983 102204116 -41582339 - L1MEc LINE L1 -3085 3130 2019 266 351 59 9 chr12 102204303 102204525 -41581930 - HAL1 LINE L1 -769 1738 1506 698 254 5 32 chr12 102204635 102204820 -41581635 + MIR SINE MIR 12 191 -71 23 54 0 0 chr12 102204820 102204857 -41581598 + AT_rich Low_complexity Low_complexity 1 37 0 429 275 219 0 chr12 102206828 102207006 -41579449 - MIR SINE MIR -44 218 2 363 340 81 61 chr12 102208184 102208381 -41578074 + L1PB4 LINE L1 585 785 -6064 4140 230 24 35 chr12 102208499 102208716 -41577739 + L1PB4 LINE L1 1050 1268 -5581 5462 54 15 29 chr12 102208716 102209452 -41577003 - L1PA8 LINE L1 -11 6161 5436 4140 230 24 35 chr12 102209452 102210280 -41576175 + L1PB4 LINE L1 1268 2083 -4766 * 5053 182 56 10 chr12 102210277 102212220 -41574235 + L1PB4 LINE L1 4765 6797 -61 495 0 0 0 chr12 102212225 102212280 -41574175 + (TA)n Simple_repeat Simple_repeat 1 55 0 491 218 245 14 chr12 102212936 102213083 -41573372 + MER5A DNA MER1_type 9 189 0 486 316 30 12 chr12 102213204 102213372 -41573083 - MIR3 SINE MIR -21 187 17 303 316 0 0 chr12 102213406 102213482 -41572973 - L2 LINE L2 -15 3257 3182 330 244 101 25 chr12 102213918 102214037 -41572418 - MIR SINE MIR -42 220 93 338 219 89 85 chr12 102214037 102214284 -41572171 - HAL1 LINE L1 -349 2158 1911 385 210 118 25 chr12 102214374 102214493 -41571962 - HAL1 LINE L1 -719 1788 1659 2853 251 126 42 chr12 102214976 102216493 -41569962 - HAL1 LINE L1 -835 1672 29 550 189 30 98 chr12 102216497 102216661 -41569794 - LTR48B LTR ERV1 -2 642 490 1463 213 57 27 chr12 102216665 102217036 -41569419 - LTR48 LTR ERV1 -250 537 156 246 183 0 171 chr12 102217038 102217120 -41569335 - LTR48 LTR ERV1 -585 108 1 285 340 21 0 chr12 102217148 102217242 -41569213 + MIR3 SINE MIR 112 207 -1 647 267 58 0 chr12 102218046 102218237 -41568218 + MIR SINE MIR 1 202 -60 250 315 9 56 chr12 102218583 102218691 -41567764 + MIR SINE MIR 117 219 -43 222 192 27 14 chr12 102218921 102218994 -41567461 + CT-rich Low_complexity Low_complexity 4 77 0 204 286 0 0 chr12 102219015 102219057 -41567398 + polypyrimidine Low_complexity Low_complexity 1 42 0 390 277 12 61 chr12 102220368 102220586 -41565869 - MIR SINE MIR -58 204 1 7502 85 1 7 chr12 102220608 102222451 -41564004 - L1PA8 LINE L1 -7 6165 4331 2412 61 27 0 chr12 102223488 102223785 -41562670 - AluY SINE Alu -6 305 1 337 240 53 47 chr12 102225071 102225221 -41561234 - HAL1 LINE L1 -32 2475 2325 494 278 102 27 chr12 102225269 102225456 -41560999 - MLT1I LTR MaLR -107 302 102 512 234 113 5 chr12 102225533 102225755 -41560700 - HAL1 LINE L1 -188 2319 2074 354 294 216 16 chr12 102225836 102226030 -41560425 - HAL1 LINE L1 -539 1968 1736 235 254 143 71 chr12 102226062 102226188 -41560267 - L2 LINE L2 -2 3270 3136 189 248 99 58 chr12 102227054 102227175 -41559280 + MIR3 SINE MIR 6 131 -77 25 0 0 0 chr12 102227762 102227787 -41558668 + AT_rich Low_complexity Low_complexity 1 25 0 221 316 26 44 chr12 102228532 102228646 -41557809 - L2 LINE L2 -3 3310 3199 315 65 0 0 chr12 102229175 102229221 -41557234 + (TG)n Simple_repeat Simple_repeat 2 47 0 237 377 97 24 chr12 102229272 102229479 -41556976 + L2 LINE L2 3042 3263 -9 194 340 80 20 chr12 102229487 102229637 -41556818 - L2 LINE L2 -328 2985 2827 210 343 29 20 chr12 102229917 102230019 -41556436 - L2 LINE L2 -593 2721 2619 202 338 164 27 chr12 102230760 102230985 -41555470 + L2 LINE L2 2580 2835 -479 24 32 0 0 chr12 102231258 102231289 -41555166 + AT_rich Low_complexity Low_complexity 1 31 0 369 154 39 8 chr12 102231312 102231442 -41555013 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 380 72 96 24 chr12 102231494 102231661 -41554794 + (TA)n Simple_repeat Simple_repeat 1 179 0 240 187 36 24 chr12 102231656 102231822 -41554633 + (TTATA)n Simple_repeat Simple_repeat 2 169 0 * 303 144 83 15 chr12 102231830 102231962 -41554493 + (TA)n Simple_repeat Simple_repeat 2 142 0 225 209 27 75 chr12 102233284 102233471 -41552984 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 451 211 25 19 chr12 102233336 102233497 -41552958 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 377 91 75 26 chr12 102233502 102233812 -41552643 + (TA)n Simple_repeat Simple_repeat 1 325 0 240 244 110 49 chr12 102235007 102235253 -41551202 - L1ME4a LINE L1 -60 6061 5801 4260 147 40 26 chr12 102235420 102236277 -41550178 - L1MB4 LINE L1 -1 6179 5311 256 212 40 50 chr12 102236285 102236384 -41550071 - L1ME4a LINE L1 -526 5595 5498 1956 151 10 0 chr12 102236401 102236699 -41549756 - AluSx SINE Alu -11 301 1 731 250 41 73 chr12 102236852 102237068 -41549387 - L2 LINE L2 0 3313 3109 1108 219 14 0 chr12 102237068 102237287 -41549168 + MER58A DNA MER1_type 3 224 0 731 250 41 73 chr12 102237287 102237386 -41549069 - L2 LINE L2 -204 3109 3008 1704 125 10 31 chr12 102237710 102237998 -41548457 + THE1B LTR MaLR 31 312 -52 33 73 0 0 chr12 102237998 102238066 -41548389 + AT_rich Low_complexity Low_complexity 1 68 0 732 291 34 0 chr12 102238091 102238297 -41548158 + MIR SINE MIR 46 258 -4 333 0 0 0 chr12 102239231 102239268 -41547187 + (TG)n Simple_repeat Simple_repeat 1 37 0 623 296 57 12 chr12 102239543 102239790 -41546665 - MIR SINE MIR -2 260 3 4814 150 40 150 chr12 102239993 102241637 -41544818 - MER52A LTR ERV1 0 1755 1 225 369 84 38 chr12 102241659 102242233 -41544222 - L2 LINE L2 -1654 1660 1061 1473 224 35 0 chr12 102242554 102242840 -41543615 - AluJo SINE Alu -11 301 6 240 385 58 26 chr12 102243217 102243373 -41543082 + L2 LINE L2 3112 3272 0 475 286 57 29 chr12 102243458 102243633 -41542822 - L2 LINE L2 -2 3270 3091 211 307 18 44 chr12 102244046 102244107 -41542348 - L2 LINE L2 -20 3252 3194 1839 173 53 8 chr12 102244107 102244466 -41541989 - THE1C LTR MaLR 0 375 1 211 307 18 44 chr12 102244466 102244518 -41541937 - L2 LINE L2 -78 3194 3142 313 251 114 22 chr12 102244586 102244723 -41541732 - MIR SINE MIR -73 135 11 945 231 43 23 chr12 102244810 102245066 -41541389 + MIR SINE MIR 2 262 0 1135 245 76 79 chr12 102245271 102245866 -41540589 - MLT1G1 LTR MaLR 0 595 3 24 32 0 0 chr12 102246264 102246295 -41540160 + AT_rich Low_complexity Low_complexity 1 31 0 203 122 0 24 chr12 102246324 102246365 -41540090 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr12 102247243 102247265 -41539190 + AT_rich Low_complexity Low_complexity 1 22 0 489 279 111 21 chr12 102247541 102247731 -41538724 + MIR SINE MIR 52 258 -4 1873 146 82 6 chr12 102247937 102248301 -41538154 - L1MD1 LINE L1 0 6242 5851 401 226 96 0 chr12 102249224 102249339 -41537116 - MLT1I LTR MaLR -6 403 278 300 276 8 55 chr12 102249428 102249555 -41536900 - MER94 DNA DNA 0 134 14 2238 161 72 33 chr12 102249835 102250321 -41536134 + MLT1D LTR MaLR 1 505 0 521 238 94 26 chr12 102250370 102250531 -41535924 - MIR SINE MIR -62 146 2 1315 205 64 42 chr12 102251082 102251486 -41534969 + LTR16A LTR ERVL 18 430 -20 1112 237 80 32 chr12 102252597 102252973 -41533482 - MER21B LTR ERV1 -107 756 363 480 234 14 35 chr12 102253041 102253182 -41533273 - MER21B LTR ERV1 -476 387 250 339 169 0 0 chr12 102253229 102253288 -41533167 - MER21B LTR ERV1 -792 71 13 1938 141 22 0 chr12 102253793 102254094 -41532361 - AluSx SINE Alu 0 307 1 29 28 0 0 chr12 102254094 102254130 -41532325 + AT_rich Low_complexity Low_complexity 1 36 0 2377 88 0 3 chr12 102254140 102254436 -41532019 + AluSc SINE Alu 1 295 -14 1467 90 188 35 chr12 102255820 102256075 -41530380 + AluSx SINE Alu 1 294 -18 396 275 17 8 chr12 102256229 102256349 -41530106 + MIR SINE MIR 2 122 -140 1640 122 102 64 chr12 102256357 102256718 -41529737 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr12 102256806 102256844 -41529611 + AT_rich Low_complexity Low_complexity 1 38 0 225 248 187 43 chr12 102257155 102257433 -41529022 + L1ME LINE L1 4117 4434 -1712 461 271 102 21 chr12 102257560 102257844 -41528611 + L1ME3A LINE L1 4096 4402 -1744 * 751 249 84 88 chr12 102257841 102257999 -41528456 + L1ME3A LINE L1 4644 4801 -1345 201 74 0 0 chr12 102257999 102258026 -41528429 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 751 249 84 88 chr12 102258026 102258530 -41527925 + L1ME3A LINE L1 4801 5304 -842 1208 216 184 11 chr12 102258821 102259266 -41527189 + L1ME3A LINE L1 5642 6163 -7 180 0 0 0 chr12 102260058 102260078 -41526377 + (CAA)n Simple_repeat Simple_repeat 2 21 0 242 245 72 13 chr12 102260112 102260195 -41526260 + L1ME LINE L1 5506 5593 -528 371 268 45 0 chr12 102260407 102260519 -41525936 - MIR SINE MIR 0 262 146 5956 77 27 3 chr12 102260522 102260635 -41525820 - L1PA14 LINE L1 -1 6160 6051 2426 125 22 5 chr12 102260635 102261004 -41525451 - THE1C LTR MaLR 0 375 1 10321 90 40 47 chr12 102261004 102262596 -41523859 - THE1C-int LTR MaLR 0 1580 1 2743 91 11 5 chr12 102262596 102262969 -41523486 - THE1C LTR MaLR 0 375 1 5956 77 27 3 chr12 102262969 102263290 -41523165 - L1PA14 LINE L1 -110 6051 5739 1834 154 73 22 chr12 102263290 102263647 -41522808 + THE1C LTR MaLR 1 375 0 5956 77 27 3 chr12 102263647 102264342 -41522113 - L1PA14 LINE L1 -422 5739 5026 2952 199 0 19 chr12 102264360 102264989 -41521466 + L1PA14 LINE L1 4384 5000 -1146 393 359 8 0 chr12 102264990 102265107 -41521348 - MIR SINE MIR -115 147 30 1894 138 29 4 chr12 102265113 102265428 -41521027 - AluSg SINE Alu 0 322 1 21 0 0 0 chr12 102265635 102265656 -41520799 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr12 102265858 102265883 -41520572 + (T)n Simple_repeat Simple_repeat 1 25 0 901 202 129 0 chr12 102266982 102267175 -41519280 + MER20 DNA MER1_type 1 218 -1 723 296 16 29 chr12 102267281 102267524 -41518931 + MIR SINE MIR 2 241 -21 201 200 22 0 chr12 102268204 102268249 -41518206 + L2 LINE L2 3263 3308 -5 405 0 0 0 chr12 102268877 102268922 -41517533 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 561 294 64 38 chr12 102269023 102269258 -41517197 - MIR SINE MIR -14 248 8 32 26 0 0 chr12 102270658 102270697 -41515758 + AT_rich Low_complexity Low_complexity 1 39 0 260 168 99 46 chr12 102270838 102270969 -41515486 + L1ME3A LINE L1 5663 5803 -366 318 264 42 96 chr12 102270992 102271159 -41515296 + L1ME3A LINE L1 5791 5948 -222 337 295 101 0 chr12 102272419 102272548 -41513907 - L1ME4a LINE L1 -1 6120 5979 3664 133 27 28 chr12 102273098 102273775 -41512680 + L1MA8 LINE L1 5615 6290 -1 396 286 50 31 chr12 102274008 102274272 -41512183 - L1ME4a LINE L1 -676 5445 5182 2383 83 10 0 chr12 102275377 102275679 -41510776 + AluSp SINE Alu 1 305 -8 2352 94 3 0 chr12 102275705 102276004 -41510451 + AluSc SINE Alu 1 300 -9 492 224 102 14 chr12 102276118 102276265 -41510190 + MIR SINE MIR 2 161 -101 218 262 0 0 chr12 102276257 102276299 -41510156 + L2 LINE L2 3251 3292 -21 * 490 290 26 109 chr12 102276437 102277006 -41509449 + L1ME LINE L1 142 663 -5542 702 259 103 83 chr12 102277136 102278036 -41508419 + L1ME LINE L1 678 1595 -4801 538 265 207 3 chr12 102278058 102278349 -41508106 + L1ME LINE L1 2223 2532 -3683 236 222 222 0 chr12 102278523 102278604 -41507851 + MER81 DNA DNA 1 99 -15 435 285 16 35 chr12 102279039 102279323 -41507132 - MLT1K LTR MaLR 0 588 337 1203 208 85 19 chr12 102279323 102279640 -41506815 - MER58B DNA MER1_type 0 341 4 579 235 120 6 chr12 102279706 102279889 -41506566 + L2 LINE L2 2149 2352 -962 1175 182 125 29 chr12 102280026 102280341 -41506114 - LTR54B LTR ERV1 -1 497 131 2555 20 40 0 chr12 102280341 102280640 -41505815 - AluY SINE Alu 0 311 1 1175 182 125 29 chr12 102280640 102280741 -41505714 - LTR54B LTR ERV1 -367 131 41 234 378 71 42 chr12 102281300 102281538 -41504917 - L2 LINE L2 -1 3271 3027 261 352 17 95 chr12 102284858 102285037 -41501418 - L2 LINE L2 -77 3195 3031 544 315 30 0 chr12 102285204 102285436 -41501019 + LTR16B LTR ERVL 1 239 -225 307 245 28 91 chr12 102285464 102285558 -41500897 + LTR16B LTR ERVL 331 415 -49 1862 164 3 7 chr12 102285558 102285856 -41500599 - AluJo SINE Alu -15 297 1 307 245 28 91 chr12 102285856 102285904 -41500551 + LTR16B LTR ERVL 415 464 0 709 216 30 59 chr12 102285929 102286105 -41500350 - MER34B LTR ERV1 0 565 400 2138 151 119 0 chr12 102286105 102286509 -41499946 + LTR47A LTR ERVL 1 452 0 709 216 30 59 chr12 102286509 102286637 -41499818 - MER34B LTR ERV1 -165 400 270 239 223 9 35 chr12 102286760 102286869 -41499586 - MER34C LTR ERV1 -448 128 35 205 346 110 53 chr12 102287361 102287435 -41499020 - L2 LINE L2 -338 2976 2908 2175 166 3 3 chr12 102287435 102287796 -41498659 - MLT1A1 LTR MaLR -4 361 1 205 346 110 53 chr12 102287796 102288039 -41498416 - L2 LINE L2 -406 2908 2641 253 167 0 0 chr12 102288389 102288437 -41498018 - MLT2D LTR ERVL 0 414 367 7151 129 41 8 chr12 102288444 102289636 -41496819 - Tigger3b DNA MER2_type 0 1231 1 228 184 0 0 chr12 102289636 102289685 -41496770 + (TG)n Simple_repeat Simple_repeat 2 50 0 237 221 78 0 chr12 102289707 102289784 -41496671 - L1MC4 LINE L1 -1339 6703 6621 372 94 0 0 chr12 102289784 102289837 -41496618 + (CA)n Simple_repeat Simple_repeat 1 53 0 1756 201 21 0 chr12 102289856 102290194 -41496261 - MLT2D LTR ERVL -69 345 1 429 199 30 15 chr12 102290441 102290572 -41495883 + LTR37B LTR ERV1 336 468 0 360 269 20 96 chr12 102290737 102290841 -41495614 - L1MEd LINE L1 -4942 1177 1067 1994 139 0 3 chr12 102290841 102291135 -41495320 - AluSx SINE Alu -14 298 6 360 269 20 96 chr12 102291135 102291529 -41494926 - L1MEd LINE L1 -5052 1067 717 220 176 0 0 chr12 102291530 102291564 -41494891 + polypyrimidine Low_complexity Low_complexity 3 36 0 571 163 41 12 chr12 102291565 102291737 -41494718 + CT-rich Low_complexity Low_complexity 4 180 0 1737 202 63 48 chr12 102291756 102292251 -41494204 - MLT1D LTR MaLR 0 505 4 717 289 108 19 chr12 102292255 102292570 -41493885 - L1MEd LINE L1 -5766 353 11 1345 297 95 23 chr12 102292603 102293212 -41493243 - MER115 DNA AcHobo -35 658 6 192 352 0 0 chr12 102293279 102293333 -41493122 + L2 LINE L2 2596 2649 -665 339 290 4 0 chr12 102293342 102293425 -41493030 + MIR SINE MIR 33 117 -91 478 222 8 26 chr12 102293437 102293554 -41492901 + MLT1F LTR MaLR 425 539 -3 1901 104 104 0 chr12 102294014 102294294 -41492161 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr12 102294298 102294319 -41492136 + AT_rich Low_complexity Low_complexity 1 21 0 2187 145 15 0 chr12 102294478 102294810 -41491645 - MER1B DNA MER1_type 0 337 1 828 129 24 0 chr12 102294961 102295085 -41491370 + FLAM_C SINE Alu 6 132 -11 455 233 31 8 chr12 102295226 102295355 -41491100 - L1ME3A LINE L1 -12 6158 6027 232 279 35 47 chr12 102296329 102296415 -41490040 + L2 LINE L2 3227 3311 -2 * 534 343 45 51 chr12 102296410 102296877 -41489578 - L2 LINE L2 -528 2786 2323 35 54 0 0 chr12 102297373 102297429 -41489026 + AT_rich Low_complexity Low_complexity 1 56 0 297 326 0 0 chr12 102297442 102297531 -41488924 + MARNA DNA Mariner 94 182 -404 288 306 83 25 chr12 102297723 102297880 -41488575 + L2 LINE L2 2636 2801 -513 2514 81 3 3 chr12 102298007 102298354 -41488101 + THE1A LTR MaLR 7 353 -2 11425 88 1 2 chr12 102298357 102299931 -41486524 + THE1A-int LTR MaLR 2 1573 -7 2742 85 3 0 chr12 102299937 102300291 -41486164 + THE1A LTR MaLR 1 355 0 503 357 37 12 chr12 102300619 102300860 -41485595 + MIR SINE MIR 5 251 -11 347 192 66 93 chr12 102301025 102301130 -41485325 + L1MC4a LINE L1 5292 5391 -2417 1858 96 89 25 chr12 102301130 102301410 -41485045 + AluY SINE Alu 1 298 -13 347 192 66 93 chr12 102301410 102301486 -41484969 + L1MC4a LINE L1 5391 5468 -2340 271 119 75 75 chr12 102301514 102301581 -41484874 + L1MC4a LINE L1 5540 5606 -515 1309 184 45 0 chr12 102301617 102301935 -41484520 + MER33 DNA MER1_type 1 317 -7 381 325 58 32 chr12 102302000 102302188 -41484267 + L1MC4a LINE L1 5732 5924 -1884 271 336 35 9 chr12 102303198 102303314 -41483141 + L2 LINE L2 2560 2678 -636 421 294 34 41 chr12 102303350 102303496 -41482959 - L2 LINE L2 0 3313 3169 284 339 128 39 chr12 102303602 102304213 -41482242 - L2 LINE L2 -340 2974 2242 1036 271 40 50 chr12 102304226 102304602 -41481853 - L2 LINE L2 0 3313 2942 1890 241 96 47 chr12 102305092 102305535 -41480920 - HAL1 LINE L1 -147 2360 1940 333 0 0 0 chr12 102305535 102305572 -41480883 + (TG)n Simple_repeat Simple_repeat 1 37 0 1890 241 96 47 chr12 102305572 102305752 -41480703 - HAL1 LINE L1 -567 1940 1770 674 200 0 15 chr12 102305752 102305887 -41480568 - FLAM_A SINE Alu 0 133 1 1890 241 96 47 chr12 102305887 102306099 -41480356 - HAL1 LINE L1 -737 1770 1483 2322 87 0 6 chr12 102306491 102306824 -41479631 - AluY SINE Alu 0 311 1 2170 130 3 0 chr12 102307272 102307572 -41478883 - AluSx SINE Alu -11 301 1 2857 10 0 0 chr12 102308640 102308951 -41477504 - AluYa5 SINE Alu 0 311 1 4773 219 76 51 chr12 102309053 102311207 -41475248 - L1M4 LINE L1 -1589 4557 2350 633 255 72 80 chr12 102311445 102311708 -41474747 + MIR SINE MIR 1 261 -1 215 57 19 94 chr12 102311720 102311773 -41474682 + (TTATA)n Simple_repeat Simple_repeat 4 52 0 307 282 8 157 chr12 102312474 102312729 -41473726 + L2 LINE L2 3038 3254 -18 22 0 0 0 chr12 102313161 102313183 -41473272 + GC_rich Low_complexity Low_complexity 1 22 0 716 280 84 46 chr12 102314565 102314618 -41471837 - L2 LINE L2 -116 3197 3147 2493 70 3 0 chr12 102314618 102314918 -41471537 + AluSp SINE Alu 1 301 -12 716 280 84 46 chr12 102314918 102315352 -41471103 - L2 LINE L2 -166 3147 2674 545 182 238 33 chr12 102316282 102316463 -41469992 - MER20 DNA MER1_type -1 218 1 26 30 0 0 chr12 102317822 102317855 -41468600 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr12 102318548 102318577 -41467878 + AT_rich Low_complexity Low_complexity 1 29 0 2423 84 0 0 chr12 102319098 102319395 -41467060 - AluSg SINE Alu -13 297 1 338 321 80 0 chr12 102321161 102321273 -41465182 - MIR3 SINE MIR -7 201 81 1027 317 135 14 chr12 102321529 102321954 -41464501 - L2 LINE L2 -95 3218 2846 291 28 0 0 chr12 102321954 102321990 -41464465 + (TTA)n Simple_repeat Simple_repeat 1 36 0 4444 8 0 0 chr12 102321991 102322488 -41463967 - L1PA2 LINE L1 -13 6142 5646 1027 317 135 14 chr12 102322488 102322806 -41463649 - L2 LINE L2 -466 2847 2374 276 361 0 17 chr12 102322842 102322961 -41463494 + MIR3 SINE MIR 77 193 -15 21 0 0 0 chr12 102323322 102323343 -41463112 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr12 102324094 102324153 -41462302 + AT_rich Low_complexity Low_complexity 1 59 0 334 246 0 0 chr12 102324401 102324466 -41461989 + L2 LINE L2 3202 3266 -6 612 286 132 0 chr12 102324957 102325177 -41461278 + MIR SINE MIR 2 250 -12 2098 136 3 0 chr12 102326896 102327204 -41459251 - AluSx SINE Alu -3 309 1 540 170 30 0 chr12 102327386 102327486 -41458969 - AluJo SINE Alu -13 299 197 887 118 0 29 chr12 102327502 102327638 -41458817 - AluJo SINE Alu -169 133 2 231 274 105 32 chr12 102327849 102327944 -41458511 - MIR3 SINE MIR 0 208 107 2055 235 163 19 chr12 102328354 102328559 -41457896 - L1ME2 LINE L1 0 6164 5990 1893 152 10 7 chr12 102328559 102328855 -41457600 + AluJb SINE Alu 1 297 -15 2055 235 163 19 chr12 102328855 102329506 -41456949 - L1ME2 LINE L1 -174 5990 5184 381 22 0 0 chr12 102329508 102329554 -41456901 + (TG)n Simple_repeat Simple_repeat 1 46 0 1839 268 68 37 chr12 102329580 102330701 -41455754 - L1ME2 LINE L1 -962 5184 3986 260 367 18 9 chr12 102330865 102330974 -41455481 - L2 LINE L2 -177 3095 2986 277 297 90 9 chr12 102331066 102331177 -41455278 - MIR SINE MIR -23 239 120 500 247 77 33 chr12 102331663 102331845 -41454610 + MIR SINE MIR 73 262 0 1827 123 61 0 chr12 102332434 102332711 -41453744 + AluJb SINE Alu 1 294 -18 189 0 0 0 chr12 102332712 102332733 -41453722 + (TG)n Simple_repeat Simple_repeat 2 22 0 434 281 122 24 chr12 102333900 102334146 -41452309 - L1ME4a LINE L1 -199 5922 5653 573 288 122 59 chr12 102334192 102334401 -41452054 - L1M4c LINE L1 -864 964 770 2332 74 0 13 chr12 102334401 102334713 -41451742 - AluY SINE Alu -3 308 1 573 288 122 59 chr12 102334713 102335122 -41451333 - L1M4c LINE L1 -1058 770 61 405 0 0 0 chr12 102335280 102335325 -41451130 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chr12 102335331 102335360 -41451095 + AT_rich Low_complexity Low_complexity 1 29 0 504 0 0 0 chr12 102335880 102335936 -41450519 + (CA)n Simple_repeat Simple_repeat 2 57 0 303 49 0 0 chr12 102335935 102335976 -41450479 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2722 161 39 48 chr12 102335982 102336528 -41449927 - MER68 LTR ERV1 0 562 22 237 196 0 0 chr12 102336533 102336584 -41449871 + (CA)n Simple_repeat Simple_repeat 2 52 0 28 0 0 0 chr12 102337035 102337063 -41449392 + AT_rich Low_complexity Low_complexity 1 28 0 339 178 84 37 chr12 102337514 102337621 -41448834 + L1ME4a LINE L1 5938 6049 -72 25 31 0 0 chr12 102337624 102337656 -41448799 + AT_rich Low_complexity Low_complexity 1 32 0 313 287 148 0 chr12 102337662 102337763 -41448692 + MER58A DNA MER1_type 2 117 0 25 0 0 0 chr12 102338020 102338045 -41448410 + AT_rich Low_complexity Low_complexity 1 25 0 907 135 0 0 chr12 102338048 102338181 -41448274 + FLAM_C SINE Alu 1 133 0 301 156 26 0 chr12 102338187 102338264 -41448191 + (TA)n Simple_repeat Simple_repeat 2 80 0 304 324 51 7 chr12 102338552 102338696 -41447759 - MIR SINE MIR -66 142 40 22 0 0 0 chr12 102338723 102338745 -41447710 + AT_rich Low_complexity Low_complexity 1 22 0 407 336 15 0 chr12 102338848 102338985 -41447470 + L3 LINE CR1 1428 1566 -11 21 0 0 0 chr12 102339813 102339834 -41446621 + AT_rich Low_complexity Low_complexity 1 21 0 2099 126 0 43 chr12 102340212 102340254 -41446201 - AluSx SINE Alu 0 312 270 216 0 0 0 chr12 102340254 102340278 -41446177 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2099 126 0 43 chr12 102340278 102340561 -41445894 - AluSx SINE Alu -42 270 1 780 161 134 65 chr12 102341275 102341461 -41444994 - MER20 DNA MER1_type -20 199 1 198 0 0 0 chr12 102341546 102341568 -41444887 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr12 102342557 102342580 -41443875 + AT_rich Low_complexity Low_complexity 1 23 0 453 159 56 40 chr12 102344397 102344523 -41441932 - L1MC4 LINE L1 -1 8041 7914 210 91 0 0 chr12 102344527 102344560 -41441895 + (TC)n Simple_repeat Simple_repeat 1 33 0 441 290 130 6 chr12 102344611 102344780 -41441675 + MIR SINE MIR 57 246 -16 203 139 0 47 chr12 102344751 102344794 -41441661 + L2 LINE L2 3263 3303 -10 * 342 265 122 34 chr12 102346819 102346966 -41439489 + L1ME LINE L1 5530 5689 -432 487 262 41 28 chr12 102347861 102348006 -41438449 - MIR SINE MIR -62 200 54 1237 246 115 55 chr12 102348396 102348922 -41437533 - MLT1F1 LTR MaLR -8 559 3 277 312 101 30 chr12 102349001 102349200 -41437255 - MIR SINE MIR -43 219 7 24 53 0 0 chr12 102349856 102349894 -41436561 + AT_rich Low_complexity Low_complexity 1 38 0 200 289 0 0 chr12 102350205 102350257 -41436198 + CT-rich Low_complexity Low_complexity 4 55 0 23 68 0 0 chr12 102350317 102350361 -41436094 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr12 102352253 102352293 -41434162 + AT_rich Low_complexity Low_complexity 1 40 0 307 304 37 44 chr12 102353919 102354054 -41432401 - L1MCc LINE L1 -5950 473 340 23 0 0 0 chr12 102354583 102354606 -41431849 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr12 102354894 102354925 -41431530 + AT_rich Low_complexity Low_complexity 1 31 0 307 320 30 10 chr12 102354991 102355091 -41431364 + L3 LINE CR1 1473 1574 -3 219 69 0 0 chr12 102355348 102355377 -41431078 + (TC)n Simple_repeat Simple_repeat 1 29 0 1885 152 10 0 chr12 102355377 102355666 -41430789 - AluSx SINE Alu -20 292 1 207 0 0 0 chr12 102355951 102355974 -41430481 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 296 299 231 0 chr12 102357016 102357163 -41429292 - MIR SINE MIR -51 211 31 842 161 27 0 chr12 102357163 102357312 -41429143 - MER20 DNA MER1_type 0 219 67 755 219 21 101 chr12 102358127 102358365 -41428090 - MIR SINE MIR -21 241 23 2275 108 0 6 chr12 102359119 102359433 -41427022 + AluSx SINE Alu 1 312 0 25 31 0 0 chr12 102360107 102360139 -41426316 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 102360783 102360804 -41425651 + AT_rich Low_complexity Low_complexity 1 21 0 1802 163 0 7 chr12 102360945 102361233 -41425222 + MER7A DNA MER2_type 63 346 0 504 291 29 31 chr12 102362292 102362319 -41424136 - L1MC/D LINE L1 -374 5796 5770 2260 71 3 32 chr12 102362319 102362628 -41423827 - AluY SINE Alu -11 300 1 504 291 29 31 chr12 102362628 102362832 -41423623 - L1MC/D LINE L1 -400 5770 5583 758 271 22 41 chr12 102363678 102363947 -41422508 - L2 LINE L2 0 3313 3050 309 312 54 50 chr12 102364013 102364234 -41422221 - L1M4 LINE L1 -3654 2492 2271 229 294 10 10 chr12 102364495 102364597 -41421858 - L1ME LINE L1 -280 5890 5789 261 245 55 18 chr12 102364601 102364764 -41421691 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 503 311 120 12 chr12 102364778 102365224 -41421231 - L1ME LINE L1 -391 5771 5276 297 246 36 45 chr12 102365237 102365347 -41421108 - L1ME LINE L1 -924 5222 5114 613 297 113 40 chr12 102365375 102366278 -41420177 - L1ME LINE L1 -1095 5051 4083 3135 180 33 25 chr12 102366295 102367072 -41419383 - L1MD2 LINE L1 -12 6347 5577 2438 93 0 0 chr12 102367072 102367382 -41419073 - AluSg SINE Alu 0 310 1 3135 180 33 25 chr12 102367382 102368134 -41418321 - L1MD2 LINE L1 -782 5577 4630 23 33 0 0 chr12 102368199 102368229 -41418226 + AT_rich Low_complexity Low_complexity 1 30 0 252 319 93 0 chr12 102368230 102368412 -41418043 - L1ME LINE L1 -2098 4048 3850 261 271 0 0 chr12 102368526 102368585 -41417870 - L1MD2 LINE L1 -75 6284 6226 1253 226 142 99 chr12 102368590 102369275 -41417180 - MER21B LTR ERV1 -149 714 1 544 263 32 58 chr12 102369288 102369688 -41416767 - L1ME LINE L1 -2647 3499 3110 1339 121 0 0 chr12 102369705 102369887 -41416568 + AluSg SINE Alu 4 185 -125 212 0 36 0 chr12 102369889 102369917 -41416538 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2329 174 32 21 chr12 102369917 102370440 -41416015 - L1MB8 LINE L1 -10 6168 5640 332 308 110 0 chr12 102370570 102370716 -41415739 + L1M4 LINE L1 2662 2823 -3323 1434 192 152 0 chr12 102370803 102371105 -41415350 + MER7A DNA MER2_type 1 346 0 369 0 0 0 chr12 102371213 102371234 -41415221 + (TG)n Simple_repeat Simple_repeat 1 62 0 369 0 0 0 chr12 102371234 102371275 -41415180 + (TG)n Simple_repeat Simple_repeat 2 42 0 1757 122 8 23 chr12 102371307 102371570 -41414885 - AluJo SINE Alu -53 259 1 332 246 31 46 chr12 102371570 102371700 -41414755 - L1ME LINE L1 -3167 2979 2852 428 295 39 14 chr12 102371721 102371928 -41414527 - L1MD2 LINE L1 -1896 4250 4039 1596 38 0 0 chr12 102371946 102372156 -41414299 - L1PA4 LINE L1 -2977 3169 2960 18119 34 0 0 chr12 102372156 102375124 -41411331 + L1PA4 LINE L1 3184 6155 0 1292 245 124 53 chr12 102375167 102375731 -41410724 - L1MC4 LINE L1 -1023 7019 6416 255 61 0 0 chr12 102376418 102376451 -41410004 + (TG)n Simple_repeat Simple_repeat 2 34 0 1906 114 83 20 chr12 102377571 102377922 -41408533 - THE1C LTR MaLR -2 373 1 198 352 68 11 chr12 102378175 102378263 -41408192 - L2 LINE L2 -2 3270 3178 8838 34 4 4 chr12 102378287 102380148 -41406307 + L1PA4 LINE L1 4296 6155 0 2493 78 0 0 chr12 102380224 102380533 -41405922 + AluY SINE Alu 1 309 -2 2346 88 7 3 chr12 102381615 102381922 -41404533 - AluSg SINE Alu -2 308 1 181 403 54 16 chr12 102382646 102382775 -41403680 + L2 LINE L2 2919 3052 -220 882 291 52 59 chr12 102383895 102384355 -41402100 + L2 LINE L2 2810 3266 -47 380 206 77 110 chr12 102384372 102384527 -41401928 + MIR SINE MIR 113 262 0 961 266 61 10 chr12 102385374 102386023 -41400432 + L1MEc LINE L1 1895 2552 -3663 830 238 66 66 chr12 102386033 102386319 -41400136 + MER21B LTR ERV1 318 603 -260 1816 259 58 19 chr12 102386368 102387225 -41399230 + L1MEc LINE L1 2763 3653 -2562 2656 20 0 0 chr12 102387254 102387551 -41398904 + AluYa5 SINE Alu 1 297 -14 460 151 12 0 chr12 102387551 102387637 -41398818 - L1MA4A LINE L1 -35 6268 6182 624 189 24 63 chr12 102387661 102387867 -41398588 - L1MA4A LINE L1 -234 6069 5872 734 233 46 23 chr12 102387955 102388260 -41398195 + L1M4 LINE L1 4572 4883 -1263 285 154 31 15 chr12 102388286 102388351 -41398104 + L1MC5 LINE L1 6688 6753 -1208 526 197 34 41 chr12 102388365 102388512 -41397943 + L1MC5 LINE L1 7051 7196 -765 1263 214 88 50 chr12 102388542 102389141 -41397314 + L1MC5 LINE L1 7293 7914 -47 2314 88 3 14 chr12 102389419 102389715 -41396740 - AluSp SINE Alu -20 293 1 878 181 37 69 chr12 102390544 102390760 -41395695 - MER3 DNA MER1_type 0 209 1 656 130 0 0 chr12 102391651 102391751 -41394704 - AluSg/x SINE Alu -3 306 207 432 300 17 0 chr12 102391751 102391871 -41394584 + L2 LINE L2 2175 2296 -1018 428 247 0 0 chr12 102391971 102392060 -41394395 - MER21B LTR ERV1 -52 811 723 701 97 0 0 chr12 102392060 102392153 -41394302 - AluSq SINE Alu -19 294 202 397 161 12 12 chr12 102392153 102392234 -41394221 - MER21A LTR ERV1 -131 800 720 1683 87 0 0 chr12 102392253 102392459 -41393996 - AluSq SINE Alu -98 215 10 960 171 42 5 chr12 102392463 102392679 -41393776 - ORSL DNA AcHobo -39 236 13 423 341 77 0 chr12 102392761 102392943 -41393512 + MER91A DNA MER1_type 1 196 0 414 306 102 42 chr12 102392980 102393264 -41393191 - L2 LINE L2 -92 3221 2921 796 313 17 0 chr12 102393322 102393555 -41392900 + L2 LINE L2 2061 2297 -1017 3849 182 83 9 chr12 102393660 102394406 -41392049 - MER21B LTR ERV1 -62 801 1 186 43 0 0 chr12 102394411 102394434 -41392021 + (CTAG)n Simple_repeat Simple_repeat 2 24 0 290 228 0 63 chr12 102394444 102394523 -41391932 - MLT2C1 LTR ERVL -55 342 269 586 179 142 8 chr12 102394662 102394796 -41391659 - MLT1E3 LTR MaLR -428 196 45 1184 265 118 58 chr12 102394864 102395235 -41391220 + L2 LINE L2 2285 2632 -681 2122 141 0 0 chr12 102395235 102395539 -41390916 - AluSx SINE Alu -8 304 1 1184 265 118 58 chr12 102395539 102396129 -41390326 + L2 LINE L2 2632 3308 -5 185 343 14 14 chr12 102396126 102396199 -41390256 - L2 LINE L2 -474 2840 2768 * 5551 91 9 6 chr12 102397165 102397654 -41388801 - L1PA13 LINE L1 -2 6161 5675 321 26 0 0 chr12 102397654 102397692 -41388763 + (TG)n Simple_repeat Simple_repeat 2 39 0 5551 91 9 6 chr12 102397692 102397724 -41388731 - L1PA13 LINE L1 -488 5675 5645 933 72 0 0 chr12 102397724 102397863 -41388592 + (TA)n Simple_repeat Simple_repeat 2 140 0 5551 91 9 6 chr12 102397863 102399105 -41387350 - L1PA13 LINE L1 -518 5645 4397 2565 107 6 3 chr12 102399427 102399790 -41386665 - THE1B LTR MaLR 0 364 1 10154 94 56 37 chr12 102399790 102401341 -41385114 - THE1B-int LTR MaLR 0 1580 1 2476 113 31 3 chr12 102401341 102401695 -41384760 - THE1B LTR MaLR 0 364 1 494 309 42 24 chr12 102401941 102402106 -41384349 - L2 LINE L2 -6 3266 3099 189 330 93 33 chr12 102402166 102402348 -41384107 - L2 LINE L2 -407 2907 2715 234 65 0 0 chr12 102402364 102402395 -41384060 - U2 snRNA snRNA -155 33 3 748 299 94 42 chr12 102402419 102402970 -41383485 - L2 LINE L2 -623 2691 2112 277 240 88 48 chr12 102402975 102403100 -41383355 - MLT1I LTR MaLR 0 409 280 214 296 148 0 chr12 102403359 102403440 -41383015 - MIR SINE MIR -37 225 133 624 254 57 10 chr12 102403443 102403636 -41382819 - MLT1I LTR MaLR -205 204 3 823 264 57 108 chr12 102403839 102404006 -41382449 + L2 LINE L2 2881 3055 -258 201 39 0 0 chr12 102404006 102404032 -41382423 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2009 102 11 0 chr12 102404039 102404304 -41382151 - AluSq SINE Alu -45 268 1 823 264 57 108 chr12 102404304 102404582 -41381873 + L2 LINE L2 3061 3311 -2 2248 103 0 3 chr12 102404672 102404962 -41381493 + AluSq SINE Alu 1 289 -24 333 118 0 0 chr12 102404962 102405013 -41381442 + (GA)n Simple_repeat Simple_repeat 1 51 0 359 277 131 72 chr12 102405013 102405595 -41380860 - L2 LINE L2 -1481 1833 1218 227 259 326 34 chr12 102406191 102406338 -41380117 - MIR SINE MIR -66 196 7 195 204 0 0 chr12 102407363 102407407 -41379048 + CT-rich Low_complexity Low_complexity 2 45 0 437 222 30 20 chr12 102407773 102407872 -41378583 + L2 LINE L2 3191 3290 -23 7356 40 1 0 chr12 102407877 102409127 -41377328 + L1PA4 LINE L1 4899 6149 -6 208 289 0 0 chr12 102409159 102409204 -41377251 - L2 LINE L2 -18 3254 3210 1275 164 27 134 chr12 102409431 102409588 -41376867 + MLT1A1 LTR MaLR 1 173 -192 1836 133 70 0 chr12 102409588 102409858 -41376597 - AluSx SINE Alu -23 289 1 1275 164 27 134 chr12 102409858 102410030 -41376425 + MLT1A1 LTR MaLR 173 280 -85 1927 152 0 29 chr12 102410030 102410340 -41376115 - AluJo SINE Alu -8 304 4 1275 164 27 134 chr12 102410340 102410418 -41376037 + MLT1A1 LTR MaLR 280 365 0 191 291 53 66 chr12 102411098 102411249 -41375206 + MIR SINE MIR 48 196 -66 1951 128 35 3 chr12 102411301 102411583 -41374872 - AluSx SINE Alu -21 291 1 21 0 0 0 chr12 102413440 102413461 -41372994 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr12 102413502 102413565 -41372890 + AT_rich Low_complexity Low_complexity 1 63 0 2154 117 13 0 chr12 102413833 102414141 -41372314 + AluSx SINE Alu 1 312 0 1843 86 15 123 chr12 102414606 102414930 -41371525 - AluSg1 SINE Alu -20 289 1 23 33 0 0 chr12 102415132 102415162 -41371293 + AT_rich Low_complexity Low_complexity 1 30 0 1772 170 10 35 chr12 102415393 102415704 -41370751 - AluJb SINE Alu -9 303 1 1838 248 124 28 chr12 102416041 102416750 -41369705 - MER20B DNA MER1_type -6 777 1 2205 133 0 0 chr12 102416821 102417123 -41369332 - AluSx SINE Alu -10 302 1 202 276 60 82 chr12 102418467 102418569 -41367886 + L2 LINE L2 3183 3283 -30 2189 102 6 16 chr12 102418569 102418883 -41367572 - AluSx SINE Alu -1 311 1 202 276 60 82 chr12 102418883 102418914 -41367541 + L2 LINE L2 3283 3313 0 251 299 102 39 chr12 102418930 102419057 -41367398 + MIR SINE MIR 16 150 -58 1901 155 36 31 chr12 102419075 102419405 -41367050 - MLT1B LTR MaLR 0 390 56 2490 142 43 19 chr12 102419405 102419821 -41366634 - MSTB LTR MaLR 0 426 1 1901 155 36 31 chr12 102419821 102419878 -41366577 - MLT1B LTR MaLR -334 56 1 2067 170 78 66 chr12 102419883 102420382 -41366073 - MLT1D LTR MaLR 0 505 1 201 74 0 0 chr12 102420751 102420778 -41365677 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 377 11 0 chr12 102421335 102421518 -41364937 + L1ME LINE L1 5527 5711 -410 334 206 16 71 chr12 102421695 102421821 -41364634 + L1ME4a LINE L1 5947 6065 -56 2250 110 3 3 chr12 102422191 102422492 -41363963 - AluSx SINE Alu -11 301 1 180 115 0 0 chr12 102422546 102422572 -41363883 - MIR SINE MIR -67 141 116 445 311 110 22 chr12 102423639 102423669 -41362786 + MIR SINE MIR 1 27 -235 225 65 0 0 chr12 102423669 102423700 -41362755 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 445 311 110 22 chr12 102423700 102423897 -41362558 + MIR SINE MIR 27 248 -14 370 287 6 33 chr12 102424957 102425138 -41361317 + CT-rich Low_complexity Low_complexity 1 176 0 329 224 184 10 chr12 102426168 102426266 -41360189 + L2 LINE L2 3188 3302 -11 252 86 0 0 chr12 102427518 102427553 -41358902 + (CA)n Simple_repeat Simple_repeat 2 36 0 724 188 45 107 chr12 102427722 102427773 -41358682 + MER63A DNA MER1_type 1 54 -1634 2244 107 3 0 chr12 102427773 102428082 -41358373 + AluSg SINE Alu 1 310 0 724 188 45 107 chr12 102428082 102428254 -41358201 + MER63A DNA MER1_type 54 210 0 28 71 0 0 chr12 102429622 102429678 -41356777 + AT_rich Low_complexity Low_complexity 1 56 0 525 318 67 4 chr12 102430755 102430994 -41355461 + L2 LINE L2 2638 2891 -423 192 156 67 22 chr12 102431209 102431254 -41355201 + L2 LINE L2 3263 3309 -4 29 47 0 0 chr12 102431339 102431382 -41355073 + AT_rich Low_complexity Low_complexity 1 43 0 2235 110 14 14 chr12 102431411 102431765 -41354690 + L1PA15 LINE L1 5696 6049 -116 3301 136 38 49 chr12 102431765 102432420 -41354035 - MER51A LTR ERV1 0 640 2 824 92 8 0 chr12 102432420 102432540 -41353915 + L1PA15 LINE L1 6045 6165 0 241 294 0 12 chr12 102434150 102434235 -41352220 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 2109 284 117 15 chr12 102434383 102434802 -41351653 - L2 LINE L2 -1 3312 2937 198 0 0 0 chr12 102434802 102434824 -41351631 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2109 284 117 15 chr12 102434824 102435563 -41350892 - L2 LINE L2 -376 2937 2031 421 286 137 0 chr12 102436174 102436356 -41350099 - LTR16C LTR ERVL -12 479 273 535 289 116 28 chr12 102436750 102437137 -41349318 + L1ME4a LINE L1 5460 5880 -241 21 0 0 0 chr12 102437152 102437173 -41349282 + AT_rich Low_complexity Low_complexity 1 21 0 2445 68 0 0 chr12 102437177 102437473 -41348982 + AluY SINE Alu 1 296 -15 456 67 0 0 chr12 102437473 102437533 -41348922 + (TA)n Simple_repeat Simple_repeat 2 61 0 21 36 0 0 chr12 102437670 102437698 -41348757 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 102438274 102438299 -41348156 + AT_rich Low_complexity Low_complexity 1 25 0 2769 234 174 96 chr12 102439050 102439810 -41346645 - L2 LINE L2 0 3313 2613 330 115 0 0 chr12 102439810 102439862 -41346593 + (TG)n Simple_repeat Simple_repeat 1 52 0 2769 234 174 96 chr12 102439862 102440299 -41346156 - L2 LINE L2 -700 2613 2211 391 167 14 0 chr12 102440299 102440371 -41346084 + MER104 DNA Tc2 29 101 -79 2769 234 174 96 chr12 102440371 102441234 -41345221 - L2 LINE L2 -1102 2211 1007 303 273 18 18 chr12 102441963 102442073 -41344382 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 1577 213 22 17 chr12 102442469 102442734 -41343721 - L1M4 LINE L1 -2097 4860 4590 1811 154 21 4 chr12 102442734 102443049 -41343406 - AluSx SINE Alu 0 320 1 1577 213 22 17 chr12 102443049 102443190 -41343265 - L1M4 LINE L1 -2367 4590 4451 1967 170 111 39 chr12 102443190 102443696 -41342759 - MER74A LTR ERVL 0 558 72 1636 114 0 5 chr12 102443696 102443915 -41342540 - AluSq SINE Alu -17 296 79 1967 170 111 39 chr12 102443915 102443949 -41342506 - MER74A LTR ERVL -486 72 42 1567 220 27 9 chr12 102443949 102444446 -41342009 - L1M4 LINE L1 -2502 4455 3922 770 288 51 37 chr12 102444475 102444838 -41341617 - L1M4 LINE L1 -6352 507 2 241 259 86 0 chr12 102444943 102445024 -41341431 - L1ME LINE L1 -466 5704 5617 2373 128 27 10 chr12 102445431 102445845 -41340610 - L1MA4 LINE L1 -12 6288 5868 3623 122 10 7 chr12 102445850 102446458 -41339997 + L1MA4 LINE L1 5276 5885 -415 4151 272 187 24 chr12 102446544 102448622 -41337833 - L2 LINE L2 -15 3298 883 26 30 0 0 chr12 102448810 102448843 -41337612 + AT_rich Low_complexity Low_complexity 1 33 0 297 207 69 11 chr12 102449567 102449654 -41336801 - MLT1I LTR MaLR 0 409 318 228 279 16 0 chr12 102449828 102449889 -41336566 - MLT1I LTR MaLR -307 102 41 2165 125 0 0 chr12 102451113 102451409 -41335046 + AluJb SINE Alu 5 300 -12 2355 105 3 0 chr12 102451789 102452093 -41334362 + AluSp SINE Alu 1 305 -8 351 333 31 42 chr12 102452186 102452378 -41334077 - MIR SINE MIR -71 191 2 2768 214 45 20 chr12 102452562 102453199 -41333256 - MER82 DNA MER2_type 0 653 1 2104 122 7 0 chr12 102453772 102454066 -41332389 + AluSx SINE Alu 1 296 -16 236 339 83 9 chr12 102454400 102454509 -41331946 - L2 LINE L2 0 3313 3197 289 218 70 155 chr12 102454691 102454975 -41331480 - L2 LINE L2 0 3313 3054 1513 203 32 24 chr12 102454975 102455354 -41331101 + LTR52 LTR ERVL 1 382 -39 3453 243 79 34 chr12 102455354 102456073 -41330382 - L2 LINE L2 -259 3054 2241 595 217 7 0 chr12 102456073 102456216 -41330239 + L1MA4 LINE L1 6151 6294 -6 3453 243 79 34 chr12 102456216 102456698 -41329757 - L2 LINE L2 -1072 2241 1782 42726 34 1 2 chr12 102456715 102462870 -41323585 - L1PA3 LINE L1 -5 6150 4 354 289 176 0 chr12 102462871 102463013 -41323442 - L2 LINE L2 -1520 1794 1628 286 317 100 19 chr12 102463165 102463474 -41322981 + L1MEd LINE L1 452 785 -5334 4603 201 73 56 chr12 102463987 102465132 -41321323 + Charlie1a DNA MER1_type 1 1125 -1636 275 49 24 0 chr12 102465132 102465173 -41321282 + (TG)n Simple_repeat Simple_repeat 2 43 0 1978 141 0 21 chr12 102465173 102465464 -41320991 - AluSx SINE Alu -27 285 1 4603 201 73 56 chr12 102465464 102465748 -41320707 + Charlie1a DNA MER1_type 1124 1455 0 22 0 0 0 chr12 102466575 102466597 -41319858 + AT_rich Low_complexity Low_complexity 1 22 0 481 244 9 9 chr12 102467386 102467501 -41318954 + L2 LINE L2 3191 3305 -8 369 283 93 78 chr12 102467517 102467722 -41318733 - MIR SINE MIR -49 213 6 584 262 61 76 chr12 102469073 102469481 -41316974 - MLT1K LTR MaLR 0 588 187 971 275 16 23 chr12 102469926 102470074 -41316381 + MIR SINE MIR 6 153 -109 1134 178 58 9 chr12 102470074 102470299 -41316156 - MER46A DNA MER2_type 0 236 1 971 275 16 23 chr12 102470299 102470408 -41316047 + MIR SINE MIR 153 261 -1 36 23 0 0 chr12 102470480 102470523 -41315932 + AT_rich Low_complexity Low_complexity 1 43 0 2174 100 0 0 chr12 102470524 102470805 -41315650 - AluSg SINE Alu -14 296 16 771 271 138 31 chr12 102471015 102471344 -41315111 - L2 LINE L2 -597 2717 2338 1776 198 36 55 chr12 102471344 102471641 -41314814 - MLT1C LTR MaLR -2 465 179 2344 96 0 3 chr12 102471641 102471942 -41314513 - AluSc SINE Alu -9 300 1 1776 198 36 55 chr12 102471942 102472118 -41314337 - MLT1C LTR MaLR -288 179 1 771 271 138 31 chr12 102472118 102472179 -41314276 - L2 LINE L2 -976 2338 2285 224 309 37 0 chr12 102472690 102472771 -41313684 - L2 LINE L2 -5 3308 3225 261 346 40 55 chr12 102473181 102473383 -41313072 + MIR3 SINE MIR 4 202 -6 1302 143 18 14 chr12 102473800 102474017 -41312438 + MER20 DNA MER1_type 2 219 0 2126 114 14 0 chr12 102474200 102474490 -41311965 - AluSx SINE Alu -13 299 6 779 240 55 28 chr12 102474857 102475111 -41311344 + MIR SINE MIR 2 262 0 399 251 216 28 chr12 102475111 102475366 -41311089 + L1ME4a LINE L1 5800 6102 -19 773 287 26 9 chr12 102475895 102476125 -41310330 + MIR SINE MIR 8 241 -21 200 240 40 0 chr12 102477296 102477346 -41309109 - L2 LINE L2 -1 3312 3261 21 36 0 0 chr12 102477701 102477729 -41308726 + AT_rich Low_complexity Low_complexity 1 28 0 6137 81 50 0 chr12 102477729 102478730 -41307725 - L1PA11 LINE L1 -1 6173 5131 278 314 130 23 chr12 102479340 102479639 -41306816 + L2 LINE L2 1763 2093 -1221 488 342 38 60 chr12 102479922 102480188 -41306267 + L2 LINE L2 2992 3251 -21 278 218 14 95 chr12 102480328 102480475 -41305980 + L1ME4a LINE L1 5984 6118 -3 219 277 0 0 chr12 102480530 102480577 -41305878 + L2 LINE L2 3210 3256 -16 502 364 67 0 chr12 102480661 102480900 -41305555 + MIR SINE MIR 1 255 -7 485 310 28 43 chr12 102481594 102481987 -41304468 - HAL1 LINE L1 -863 1644 1258 313 209 0 45 chr12 102482018 102482085 -41304370 + MIR SINE MIR 81 144 -118 1513 170 24 93 chr12 102482096 102482473 -41303982 - MLT1A1 LTR MaLR -5 360 10 370 226 176 0 chr12 102482473 102482575 -41303880 + MIR SINE MIR 143 262 0 261 0 0 0 chr12 102483318 102483347 -41303108 + (CAG)n Simple_repeat Simple_repeat 3 31 0 211 366 65 0 chr12 102483507 102483600 -41302855 + MIR3 SINE MIR 85 183 -25 403 315 39 0 chr12 102484242 102484372 -41302083 - L2 LINE L2 -1 3271 3137 190 48 0 95 chr12 102484460 102484502 -41301953 + (CATAT)n Simple_repeat Simple_repeat 3 40 0 244 283 17 0 chr12 102484785 102484845 -41301610 + MIR SINE MIR 89 149 -113 432 0 0 0 chr12 102485118 102485166 -41301289 + (GA)n Simple_repeat Simple_repeat 1 48 0 821 302 31 4 chr12 102485845 102486100 -41300355 + MIR SINE MIR 1 262 0 274 281 0 0 chr12 102486174 102486231 -41300224 - L3 LINE CR1 -264 1313 1257 207 0 0 0 chr12 102486316 102486339 -41300116 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 549 304 62 26 chr12 102487455 102487682 -41298773 - MIR SINE MIR -8 254 20 2198 122 0 0 chr12 102487781 102488076 -41298379 - AluSx SINE Alu -17 295 1 2903 107 139 48 chr12 102488243 102488688 -41297767 - L1MA7 LINE L1 -1 6290 5782 2339 86 20 0 chr12 102488688 102488992 -41297463 - AluSg SINE Alu 0 310 1 2903 107 139 48 chr12 102488992 102489107 -41297348 - L1MA7 LINE L1 -509 5782 5679 21 36 0 0 chr12 102490867 102490895 -41295560 + AT_rich Low_complexity Low_complexity 1 28 0 442 328 106 6 chr12 102491051 102491231 -41295224 - L2 LINE L2 0 3272 3075 2232 126 39 17 chr12 102491261 102491617 -41294838 - THE1B LTR MaLR 0 364 1 507 186 10 10 chr12 102491833 102491935 -41294520 - MER5A DNA MER1_type -84 105 4 22 35 0 0 chr12 102492003 102492032 -41294423 + AT_rich Low_complexity Low_complexity 1 29 0 525 234 124 0 chr12 102492719 102492856 -41293599 + MIR SINE MIR 44 197 -65 223 292 105 78 chr12 102493069 102493288 -41293167 - L2 LINE L2 -107 3165 2941 1050 218 24 4 chr12 102493309 102493557 -41292898 - L1MB7 LINE L1 -22 6162 5910 1137 134 0 0 chr12 102493570 102493727 -41292728 - AluSg/x SINE Alu -23 289 133 4305 187 50 38 chr12 102493742 102495494 -41290961 - L1MB7 LINE L1 -278 5900 4111 25 0 0 0 chr12 102496254 102496279 -41290176 + AT_rich Low_complexity Low_complexity 1 25 0 1904 163 0 0 chr12 102496527 102496810 -41289645 + AluSx SINE Alu 5 287 -25 248 272 204 32 chr12 102496823 102497102 -41289353 - L1ME4a LINE L1 0 6121 5795 1939 162 7 0 chr12 102497367 102497669 -41288786 + AluJb SINE Alu 1 304 -8 420 294 114 37 chr12 102498519 102498791 -41287664 + L2 LINE L2 3021 3313 0 305 270 0 0 chr12 102498938 102499001 -41287454 - L2 LINE L2 -5 3308 3246 313 298 94 80 chr12 102499878 102500217 -41286238 - MLT1I LTR MaLR -45 364 21 282 203 17 0 chr12 102500315 102500374 -41286081 + MER117 DNA MER1_type 109 168 -29 2182 137 0 0 chr12 102501064 102501371 -41285084 + AluSx SINE Alu 1 307 -5 1957 128 0 17 chr12 102501396 102501740 -41284715 + AluSx SINE Alu 1 339 0 1381 146 139 15 chr12 102502402 102502676 -41283779 - LTR18B LTR ERVL 0 614 307 856 189 10 46 chr12 102502664 102502860 -41283595 - LTR18B LTR ERVL -425 189 1 * 264 77 0 0 chr12 102503214 102503253 -41283202 + (TG)n Simple_repeat Simple_repeat 2 40 0 231 315 167 31 chr12 102503746 102503908 -41282547 - MIR SINE MIR -71 191 8 344 343 109 37 chr12 102504012 102504362 -41282093 + L1MEd LINE L1 46 420 -5699 2467 59 0 0 chr12 102504396 102504702 -41281753 + AluY SINE Alu 3 308 -3 1889 169 96 50 chr12 102505241 102505615 -41280840 - MLT1D LTR MaLR -2 503 101 2074 79 32 85 chr12 102505615 102505931 -41280524 - AluSq SINE Alu -12 301 3 1889 169 96 50 chr12 102505931 102506035 -41280420 - MLT1D LTR MaLR -404 101 3 1041 291 61 30 chr12 102506615 102507141 -41279314 - L1MC4a LINE L1 -1884 5924 5383 478 311 140 20 chr12 102507487 102507886 -41278569 - L1MC4a LINE L1 -1315 4831 4385 1361 191 29 49 chr12 102507999 102508171 -41278284 - MER58B DNA MER1_type -2081 339 176 2130 115 0 14 chr12 102508171 102508467 -41277988 + AluSg SINE Alu 1 292 -18 1361 191 29 49 chr12 102508467 102508640 -41277815 - MER58B DNA MER1_type -2244 176 1 348 283 97 16 chr12 102508679 102509050 -41277405 - L1MC4a LINE L1 -3632 2514 2114 6114 164 109 104 chr12 102509386 102510370 -41276085 - Charlie1 DNA MER1_type -108 2653 1654 2402 72 3 10 chr12 102510370 102510674 -41275781 - AluSp SINE Alu -11 302 1 6114 164 109 104 chr12 102510674 102511500 -41274955 - Charlie1 DNA MER1_type -1107 1654 834 894 195 124 55 chr12 102511807 102511851 -41274604 - L1ME3A LINE L1 -9 6161 6121 2203 114 3 0 chr12 102511851 102512149 -41274306 + AluSq SINE Alu 1 299 -14 894 195 124 55 chr12 102512149 102512595 -41273860 - L1ME3A LINE L1 -49 6121 5580 222 177 16 16 chr12 102512652 102512714 -41273741 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 743 301 59 18 chr12 102512968 102513513 -41272942 - L1ME3A LINE L1 -748 5398 4832 700 311 98 22 chr12 102513516 102514105 -41272350 + HAL1 LINE L1 1162 1795 -712 244 180 0 0 chr12 102514562 102514612 -41271843 + HAL1b LINE L1 748 797 -551 1135 279 157 13 chr12 102514991 102515819 -41270636 + L1ME3A LINE L1 3758 4704 -1442 751 296 45 54 chr12 102515817 102516151 -41270304 + L1ME3A LINE L1 5621 5951 -219 * 2353 95 3 0 chr12 102516628 102516932 -41269523 + AluSp SINE Alu 1 305 -8 266 188 169 28 chr12 102516941 102517050 -41269405 - MIR SINE MIR -78 130 19 445 307 98 35 chr12 102517171 102517488 -41268967 - L1ME LINE L1 -536 5615 5280 323 261 52 30 chr12 102517532 102517666 -41268789 - L1ME LINE L1 -904 5242 5106 470 211 0 28 chr12 102518086 102518195 -41268260 + Charlie4 DNA MER1_type 1822 1927 -34 664 307 108 46 chr12 102518694 102519131 -41267324 + LTR16C LTR ERVL 20 483 -8 1958 125 57 7 chr12 102519207 102519504 -41266951 - AluSx SINE Alu 0 312 1 242 36 0 0 chr12 102620869 102620897 -41165558 + (T)n Simple_repeat Simple_repeat 1 28 0 779 249 67 22 chr12 102623683 102623908 -41162547 + MIR SINE MIR 28 262 0 207 333 0 15 chr12 102623908 102623974 -41162481 + C-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 102624246 102624270 -41162185 + AT_rich Low_complexity Low_complexity 1 24 0 211 225 113 0 chr12 102624701 102624772 -41161683 + L2 LINE L2 3235 3313 0 1101 276 130 23 chr12 102626857 102627352 -41159103 + L2 LINE L2 2773 3308 -5 511 285 37 21 chr12 102627455 102627697 -41158758 - L1ME LINE L1 -350 5771 5526 212 304 29 0 chr12 102627878 102627947 -41158508 - MIR3 SINE MIR -18 190 120 181 352 0 29 chr12 102629472 102629577 -41156878 - MIR SINE MIR -56 206 105 344 143 18 0 chr12 102629659 102629715 -41156740 + LTR50 LTR ERVL 1 57 -738 226 297 14 0 chr12 102630288 102630362 -41156093 + MIR SINE MIR 60 134 -128 247 343 72 64 chr12 102630698 102630934 -41155521 - L2 LINE L2 -18 3254 3017 297 266 190 51 chr12 102631416 102631574 -41154881 + MIR SINE MIR 83 262 0 1232 319 131 43 chr12 102631609 102632660 -41153795 + L2 LINE L2 1818 2961 -353 434 278 48 0 chr12 102632832 102632958 -41153497 + L2 LINE L2 3179 3310 -3 391 348 94 47 chr12 102634117 102634436 -41152019 - L2 LINE L2 -12 3260 2927 424 350 62 38 chr12 102634513 102634913 -41151542 - L2 LINE L2 -502 2812 2403 261 282 70 14 chr12 102635140 102635211 -41151244 + L2 LINE L2 3112 3186 -86 180 225 50 0 chr12 102635260 102635300 -41151155 - MIR SINE MIR -9 253 212 * 276 241 72 12 chr12 102635281 102635364 -41151091 + L2 LINE L2 3180 3267 -5 340 294 50 44 chr12 102635663 102635823 -41150632 + MIR SINE MIR 31 191 -71 289 273 109 0 chr12 102636141 102636251 -41150204 - MER5B DNA MER1_type -54 124 3 1299 172 21 51 chr12 102636526 102636638 -41149817 - MER33 DNA MER1_type -2266 319 205 2225 101 7 0 chr12 102636638 102636934 -41149521 - AluSx SINE Alu -14 298 1 1299 172 21 51 chr12 102636934 102637158 -41149297 - MER33 DNA MER1_type -2380 205 1 508 32 11 160 chr12 102637238 102637332 -41149123 - MADE1 DNA Mariner 0 80 1 352 375 13 18 chr12 102637850 102638074 -41148381 + L3 LINE CR1 1219 1441 -136 291 253 11 23 chr12 102638666 102638753 -41147702 + CT-rich Low_complexity Low_complexity 2 87 0 188 122 24 0 chr12 102638907 102638948 -41147507 + T-rich Low_complexity Low_complexity 1 42 0 346 268 118 31 chr12 102639039 102639166 -41147289 + MIR SINE MIR 13 150 -112 904 295 76 39 chr12 102639191 102639694 -41146761 - L2 LINE L2 -57 3256 2726 423 294 49 49 chr12 102639697 102639881 -41146574 - L2 LINE L2 -860 2454 2271 474 253 45 58 chr12 102639890 102640044 -41146411 - L2 LINE L2 -1345 1969 1818 270 265 111 26 chr12 102640046 102640163 -41146292 + L1ME LINE L1 57 183 -5936 31037 116 14 62 chr12 102640337 102644382 -41142073 + L1PA8 LINE L1 13 3618 -2554 1515 152 109 4 chr12 102644382 102644681 -41141774 + AluSx SINE Alu 1 326 0 31037 116 14 62 chr12 102644681 102647117 -41139338 + L1PA8 LINE L1 3618 6171 -1 979 196 25 0 chr12 102647349 102647548 -41138907 + MER3 DNA MER1_type 5 208 -1 24 32 0 0 chr12 102647581 102647612 -41138843 + AT_rich Low_complexity Low_complexity 1 31 0 658 317 67 20 chr12 102647761 102648368 -41138087 + L1ME LINE L1 916 1576 -4734 532 113 0 0 chr12 102649134 102649214 -41137241 - MADE1 DNA Mariner 0 80 1 228 89 222 0 chr12 102649415 102649460 -41136995 - MIR3 SINE MIR -49 159 105 216 425 50 6 chr12 102650418 102650597 -41135858 - MIR SINE MIR -52 210 24 188 35 35 0 chr12 102650861 102650890 -41135565 + (TAA)n Simple_repeat Simple_repeat 2 31 0 241 374 30 0 chr12 102651109 102651208 -41135247 + L2 LINE L2 2550 2651 -663 279 283 90 68 chr12 102651658 102652071 -41134384 + L1MEd LINE L1 816 1237 -4882 651 248 62 38 chr12 102652609 102652819 -41133636 - MER58C DNA MER1_type 0 215 1 378 91 0 0 chr12 102653670 102653725 -41132730 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 133 0 0 chr12 102655679 102655709 -41130746 + (A)n Simple_repeat Simple_repeat 1 30 0 394 311 0 50 chr12 102656228 102656389 -41130066 - MIR3 SINE MIR -25 183 31 190 372 13 0 chr12 102656511 102656589 -41129866 - L2 LINE L2 -556 2758 2680 335 280 161 0 chr12 102656634 102656752 -41129703 + MIR3 SINE MIR 65 201 -7 2097 104 13 7 chr12 102657846 102658153 -41128302 - AluSg SINE Alu -1 309 1 207 239 22 0 chr12 102658380 102658426 -41128029 - L2 LINE L2 -10 3303 3257 699 338 66 11 chr12 102659188 102659265 -41127190 - HAL1 LINE L1 -650 1857 1786 2092 117 0 46 chr12 102659265 102659590 -41126865 - AluY SINE Alu 0 311 2 699 338 66 11 chr12 102659590 102660056 -41126399 - HAL1 LINE L1 -721 1786 1284 565 285 40 20 chr12 102660073 102660322 -41126133 - L1ME3A LINE L1 -5 6165 5912 189 0 0 0 chr12 102660325 102660346 -41126109 + (TTG)n Simple_repeat Simple_repeat 2 22 0 236 259 132 19 chr12 102660377 102660589 -41125866 - HAL1 LINE L1 -1257 1250 1015 371 294 149 17 chr12 102660619 102660989 -41125466 - MLT1J2 LTR MaLR -41 470 1 232 196 22 54 chr12 102661052 102661144 -41125311 + CT-rich Low_complexity Low_complexity 3 91 0 867 310 79 7 chr12 102661543 102661833 -41124622 - MLT1I LTR MaLR 0 409 99 225 288 50 0 chr12 102662245 102662325 -41124130 - HAL1 LINE L1 -2372 135 52 261 0 0 0 chr12 102662404 102662433 -41124022 + (CA)n Simple_repeat Simple_repeat 1 29 0 7567 26 3 2 chr12 102662456 102663801 -41122654 - L1PA4 LINE L1 -3 6152 4807 2182 34 0 4 chr12 102663801 102664066 -41122389 + L1P1 LINE L1 5366 5629 -526 36 40 0 0 chr12 102665591 102665641 -41120814 + AT_rich Low_complexity Low_complexity 1 50 0 560 214 76 46 chr12 102667677 102667915 -41118540 - MER112 DNA MER1_type -8 252 8 1465 129 99 0 chr12 102668437 102668700 -41117755 + L1MA6 LINE L1 6006 6294 -6 2515 65 3 0 chr12 102668885 102669193 -41117262 + AluY SINE Alu 1 309 -2 497 223 194 29 chr12 102669293 102669432 -41117023 + MER5A DNA MER1_type 28 189 0 3706 122 2 9 chr12 102670820 102671352 -41115103 + MER1A DNA MER1_type 1 528 -1 647 312 8 0 chr12 102671353 102671590 -41114865 - L1MC4a LINE L1 -1894 5914 5676 186 133 0 0 chr12 102671792 102671822 -41114633 + (TTA)n Simple_repeat Simple_repeat 1 30 0 184 350 0 50 chr12 102671828 102671908 -41114547 - MIR SINE MIR -186 76 1 253 277 81 33 chr12 102671946 102672021 -41114434 - MIR SINE MIR -12 250 180 180 0 0 0 chr12 102672021 102672041 -41114414 + (TTG)n Simple_repeat Simple_repeat 1 20 0 253 277 81 33 chr12 102672041 102672134 -41114321 - MIR SINE MIR -82 180 36 338 236 50 79 chr12 102673050 102673190 -41113265 - MIR SINE MIR 0 262 127 241 323 21 42 chr12 102673870 102673966 -41112489 - L2 LINE L2 0 3272 3179 393 250 0 31 chr12 102677321 102677417 -41109038 + L2 LINE L2 3180 3272 0 216 0 0 0 chr12 102677736 102677760 -41108695 + (T)n Simple_repeat Simple_repeat 1 24 0 258 173 0 39 chr12 102680531 102680583 -41105872 - L2 LINE L2 -1 3312 3263 249 329 13 0 chr12 102680628 102680704 -41105751 - MIR SINE MIR -78 130 54 23 54 0 0 chr12 102681313 102681350 -41105105 + AT_rich Low_complexity Low_complexity 1 37 0 474 336 52 17 chr12 102685638 102685870 -41100585 + MIR SINE MIR 23 262 0 320 138 0 12 chr12 102685999 102686079 -41100376 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 198 314 137 20 chr12 102686263 102686365 -41100090 - MIR SINE MIR -55 207 94 186 133 0 0 chr12 102686811 102686841 -41099614 + (A)n Simple_repeat Simple_repeat 1 30 0 357 287 160 6 chr12 102688396 102688577 -41097878 + L2 LINE L2 3086 3294 -19 489 244 126 0 chr12 102688721 102688848 -41097607 - MIR SINE MIR -8 254 112 192 77 0 0 chr12 102690297 102690323 -41096132 + (CACCAT)n Simple_repeat Simple_repeat 5 30 0 2181 141 0 0 chr12 102691391 102691696 -41094759 + AluSx SINE Alu 1 305 -7 6557 147 30 49 chr12 102691766 102693922 -41092533 - L1MA9 LINE L1 -22 6290 4169 1952 108 0 0 chr12 102695233 102695510 -41090945 + AluSp SINE Alu 33 309 0 182 343 177 11 chr12 102695994 102696169 -41090286 - MIR SINE MIR -39 223 20 24 0 0 0 chr12 102696258 102696282 -41090173 + AT_rich Low_complexity Low_complexity 1 24 0 185 326 43 0 chr12 102698554 102698600 -41087855 + L2 LINE L2 3142 3189 -83 397 308 67 38 chr12 102698795 102699032 -41087423 + MIR SINE MIR 20 262 0 2282 116 3 0 chr12 102699035 102699345 -41087110 - AluSx SINE Alu -1 311 1 245 264 0 11 chr12 102699352 102699439 -41087016 + (TTA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr12 102699887 102699908 -41086547 + AT_rich Low_complexity Low_complexity 1 21 0 234 341 37 0 chr12 102702978 102703060 -41083395 - MIR SINE MIR -70 192 108 314 310 10 0 chr12 102703139 102703239 -41083216 + CT-rich Low_complexity Low_complexity 2 102 0 279 0 0 0 chr12 102704180 102704211 -41082244 + (TC)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr12 102705252 102705277 -41081178 + (GAA)n Simple_repeat Simple_repeat 3 27 0 2120 104 20 0 chr12 102705445 102705743 -41080712 + AluSp SINE Alu 1 304 -9 4138 38 0 0 chr12 102705846 102706343 -41080112 + L1PA3 LINE L1 5658 6154 -1 1936 129 7 18 chr12 102706462 102706777 -41079678 - AluJb SINE Alu 0 312 1 312 333 84 18 chr12 102706787 102707012 -41079443 - L1M4 LINE L1 -1743 4403 4164 240 295 32 0 chr12 102707231 102707326 -41079129 - L1ME LINE L1 -230 5891 5794 422 272 37 29 chr12 102707435 102707571 -41078884 - MIR SINE MIR -15 247 111 220 164 0 104 chr12 102707671 102707738 -41078717 - MIR SINE MIR -35 227 168 1170 142 20 25 chr12 102707738 102707935 -41078520 + AluJo SINE Alu 63 258 -54 584 276 58 38 chr12 102708412 102708705 -41077750 + LTR16A LTR ERVL 143 441 -9 2266 97 3 13 chr12 102708721 102709021 -41077434 + AluSq SINE Alu 2 298 -15 2062 102 0 4 chr12 102709383 102709657 -41076798 + AluSg SINE Alu 1 273 -37 197 293 226 8 chr12 102711964 102712097 -41074358 + L2 LINE L2 1606 1767 -1547 701 234 7 0 chr12 102712103 102712244 -41074211 - MER20 DNA MER1_type 0 219 78 16777 28 2 0 chr12 102712475 102714668 -41071787 + L1P1 LINE L1 3393 5588 -567 2328 97 0 3 chr12 102715552 102715863 -41070592 + AluSg SINE Alu 1 310 0 15031 70 8 3 chr12 102716655 102718820 -41067635 - L1ME LINE L1 -494 5672 3491 1482 186 61 3 chr12 102718957 102719071 -41067384 + AluJo SINE Alu 1 107 -205 2110 131 0 0 chr12 102719071 102719368 -41067087 + AluSq SINE Alu 12 308 -5 1482 186 61 3 chr12 102719368 102719548 -41066907 + AluJo SINE Alu 107 312 0 181 372 20 20 chr12 102719823 102719971 -41066484 - MIR SINE MIR -2 260 113 488 159 45 53 chr12 102720311 102720443 -41066012 - L1MC4 LINE L1 -398 7644 7514 261 139 0 0 chr12 102720446 102720489 -41065966 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 521 224 0 0 chr12 102720504 102720602 -41065853 - FLAM_A SINE Alu -44 98 1 618 248 58 27 chr12 102720645 102720940 -41065515 + L1ME4a LINE L1 5712 6015 -106 22 0 0 0 chr12 102722954 102722976 -41063479 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 102722989 102723012 -41063443 + AT_rich Low_complexity Low_complexity 1 23 0 2902 139 25 3 chr12 102723268 102724067 -41062388 - L1P4 LINE L1 -546 5615 4798 2224 86 0 0 chr12 102724067 102724364 -41062091 + L1PA13 LINE L1 5862 6162 -1 3480 108 29 8 chr12 102725418 102725934 -41060521 - L1PA15 LINE L1 -12 6153 5627 1502 152 15 4 chr12 102729109 102729372 -41057083 - L1MD3 LINE L1 0 7995 7730 221 343 96 0 chr12 102729407 102729480 -41056975 + L2 LINE L2 3229 3308 -5 25 73 0 0 chr12 102730661 102730702 -41055753 + AT_rich Low_complexity Low_complexity 1 41 0 30 69 0 0 chr12 102730916 102730974 -41055481 + AT_rich Low_complexity Low_complexity 1 58 0 1596 194 7 29 chr12 102732455 102732765 -41053690 - AluJb SINE Alu -9 303 1 267 258 237 21 chr12 102732794 102732887 -41053568 - MIR SINE MIR -121 141 29 1825 117 82 49 chr12 102733104 102733471 -41052984 - MLT1B LTR MaLR -11 379 1 280 57 0 0 chr12 102733790 102733825 -41052630 - U2 snRNA snRNA -153 35 1 1409 169 51 30 chr12 102733894 102734190 -41052265 - AluJo SINE Alu -6 306 5 518 257 23 37 chr12 102734422 102734636 -41051819 - L1MC4 LINE L1 0 8042 7832 2222 121 0 3 chr12 102734737 102735044 -41051411 - AluSc SINE Alu -3 306 1 5465 88 16 5 chr12 102735959 102736880 -41049575 + L1PA7 LINE L1 5169 6101 -53 389 300 25 22 chr12 102737078 102737334 -41049121 - L1ME LINE L1 -629 5541 5282 1888 167 0 0 chr12 102737334 102737621 -41048834 - AluJo SINE Alu -16 296 10 389 300 25 22 chr12 102737621 102737641 -41048814 - L1ME LINE L1 -888 5282 5264 442 317 81 30 chr12 102737686 102737957 -41048498 - L1ME LINE L1 -979 5167 4883 1969 206 33 10 chr12 102738629 102739114 -41047341 - Charlie1a DNA MER1_type -2 1453 958 40323 42 23 3 chr12 102739114 102745149 -41041306 - L1PA2 LINE L1 -1 6154 3 3364 186 41 110 chr12 102745150 102746184 -41040271 - Charlie1a DNA MER1_type -483 972 11 250 291 78 73 chr12 102747140 102747319 -41039136 - MIR SINE MIR -49 213 34 371 273 28 94 chr12 102747904 102748223 -41038232 + HAL1 LINE L1 58 355 -2152 894 216 8 72 chr12 102748240 102748270 -41038185 - MER58A DNA MER1_type -2199 221 191 1806 163 70 14 chr12 102748270 102748614 -41037841 - MLT1A1 LTR MaLR 0 365 3 894 216 8 72 chr12 102748614 102748649 -41037806 - MER58A DNA MER1_type -2229 191 155 2452 131 5 26 chr12 102748649 102749032 -41037423 - THE1C LTR MaLR 0 375 1 10726 105 31 3 chr12 102749032 102750569 -41035886 - THE1C-int LTR MaLR 0 1580 1 2396 130 11 3 chr12 102750569 102750930 -41035525 - THE1B LTR MaLR 0 364 1 894 216 8 72 chr12 102750930 102751097 -41035358 - MER58A DNA MER1_type -2262 158 1 258 192 14 27 chr12 102751339 102751412 -41035043 + HAL1 LINE L1 2331 2402 -105 2327 126 5 3 chr12 102752553 102752925 -41033530 - L1PA13 LINE L1 0 6163 5791 191 215 127 76 chr12 102752949 102753028 -41033427 + MIR SINE MIR 67 149 -59 1361 175 47 123 chr12 102753030 102753476 -41032979 + MLT2D LTR ERVL 1 412 -2 296 345 21 35 chr12 102753652 102753794 -41032661 + MIR SINE MIR 13 152 -110 213 296 56 0 chr12 102753867 102753938 -41032517 - MIR SINE MIR -95 113 39 30 45 0 0 chr12 102754748 102754792 -41031663 + AT_rich Low_complexity Low_complexity 1 44 0 183 239 0 0 chr12 102754884 102754930 -41031525 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 779 154 6 22 chr12 102755137 102755319 -41031136 + GA-rich Low_complexity Low_complexity 2 180 0 201 338 0 0 chr12 102755340 102755414 -41031041 + GA-rich Low_complexity Low_complexity 1 74 0 269 364 149 18 chr12 102755415 102755643 -41030812 - L2 LINE L2 -8 3264 3007 333 0 0 0 chr12 102756197 102756234 -41030221 + (TTG)n Simple_repeat Simple_repeat 1 37 0 787 246 16 69 chr12 102756597 102756902 -41029553 - L2 LINE L2 -6 3307 3019 1596 223 41 37 chr12 102757004 102757588 -41028867 - L1MB4 LINE L1 -2 6178 5492 1950 135 10 3 chr12 102757588 102757884 -41028571 - AluSc SINE Alu -11 298 1 1596 223 41 37 chr12 102757884 102757913 -41028542 - L1MB4 LINE L1 -688 5492 5465 243 167 0 0 chr12 102757913 102757955 -41028500 + Alu SINE Alu 2 43 -260 334 264 86 61 chr12 102758133 102758296 -41028159 - MIR SINE MIR -46 216 50 17110 35 4 7 chr12 102758355 102761190 -41025265 + L1PA3 LINE L1 3320 6152 -3 26 0 0 0 chr12 102761891 102761917 -41024538 + AT_rich Low_complexity Low_complexity 1 26 0 2063 116 0 17 chr12 102762944 102763262 -41023193 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 102763468 102763489 -41022966 + AT_rich Low_complexity Low_complexity 1 21 0 1733 183 0 43 chr12 102765551 102765873 -41020582 - AluJo SINE Alu -1 311 4 2237 266 72 33 chr12 102765915 102766649 -41019806 - MER21B LTR ERV1 -54 809 47 395 200 13 0 chr12 102766665 102766740 -41019715 - MER21B LTR ERV1 -776 87 12 2630 254 86 44 chr12 102767083 102768233 -41018222 + MER69B DNA AcHobo 2 1199 -27 201 74 0 0 chr12 102768273 102768300 -41018155 + (TC)n Simple_repeat Simple_repeat 1 27 0 378 211 22 17 chr12 102768345 102768584 -41017871 + (TA)n Simple_repeat Simple_repeat 1 240 0 1595 41 31 0 chr12 102769482 102769678 -41016777 - L1PA4 LINE L1 -2 6153 5952 604 355 57 0 chr12 102771767 102772012 -41014443 + MIR SINE MIR 1 259 -3 501 163 0 0 chr12 102772036 102772122 -41014333 - MER117 DNA MER1_type -105 92 7 599 344 170 15 chr12 102772212 102772378 -41014077 - L3 LINE CR1 -5 1572 1433 1488 187 36 65 chr12 102772378 102772763 -41013692 - MLT1A2 LTR MaLR 0 374 1 599 344 170 15 chr12 102772763 102773114 -41013341 - L3 LINE CR1 -144 1433 975 445 250 58 0 chr12 102773541 102773661 -41012794 - MIR SINE MIR -3 259 133 2032 170 23 18 chr12 102773839 102774227 -41012228 - MLT1B LTR MaLR 0 390 1 668 307 53 33 chr12 102774256 102774500 -41011955 + MIR SINE MIR 3 251 -11 2587 184 67 32 chr12 102774546 102775015 -41011440 - L1MA9 LINE L1 -38 6274 5776 270 0 0 0 chr12 102775015 102775045 -41011410 + (TG)n Simple_repeat Simple_repeat 2 31 0 2587 184 67 32 chr12 102775045 102775204 -41011251 - L1MA9 LINE L1 -536 5776 5624 2261 178 24 25 chr12 102775205 102775881 -41010574 + L1M2 LINE L1 4806 5493 -819 2019 109 7 11 chr12 102775881 102776196 -41010259 + AluSx SINE Alu 1 314 0 2261 178 24 25 chr12 102776196 102776353 -41010102 + L1M2 LINE L1 5493 5649 -663 2235 94 0 19 chr12 102776470 102776779 -41009676 - AluSq SINE Alu -10 303 1 1450 242 36 108 chr12 102776857 102777494 -41008961 + MLT1E LTR MaLR 3 593 0 230 374 48 0 chr12 102778439 102778522 -41007933 - L2 LINE L2 -1 3271 3185 264 244 11 33 chr12 102778526 102778616 -41007839 - MLT1I LTR MaLR -4 405 318 325 304 127 52 chr12 102779187 102779756 -41006699 - L2 LINE L2 -7 3265 2719 392 368 56 45 chr12 102780019 102780307 -41006148 - L2 LINE L2 -1 3271 2981 327 234 83 55 chr12 102780342 102780487 -41005968 - MLT1K LTR MaLR -31 557 409 3653 98 38 57 chr12 102780514 102781126 -41005329 + MER4A LTR ERV1 1 600 0 1117 222 43 92 chr12 102781146 102781637 -41004818 - MLT1C LTR MaLR 0 467 1 3611 122 13 6 chr12 102781665 102782188 -41004267 - MER1A DNA MER1_type 0 527 1 2110 171 36 31 chr12 102782764 102783311 -41003144 + MLT2A2 LTR ERVL 2 554 0 751 279 69 12 chr12 102785400 102785647 -41000808 - MIR SINE MIR 0 262 2 569 294 188 8 chr12 102785919 102786174 -41000281 - MLT1K LTR MaLR -18 570 270 1554 157 14 29 chr12 102786376 102786656 -40999799 - AluJo SINE Alu -13 299 24 22 0 0 0 chr12 102789530 102789552 -40996903 + AT_rich Low_complexity Low_complexity 1 22 0 196 375 0 0 chr12 102791618 102791690 -40994765 + L2 LINE L2 3201 3272 0 1597 205 136 29 chr12 102792109 102792528 -40993927 + MER31B LTR ERV1 3 466 0 244 349 0 0 chr12 102792786 102792872 -40993583 - L2 LINE L2 0 3313 3228 27 49 0 0 chr12 102792894 102792935 -40993520 + AT_rich Low_complexity Low_complexity 1 41 0 2999 120 38 7 chr12 102793158 102793609 -40992846 + MER4C LTR ERV1 1 465 0 265 235 0 0 chr12 102793631 102793682 -40992773 + L2 LINE L2 3259 3309 -4 605 273 39 0 chr12 102793965 102794119 -40992336 - MIR SINE MIR -37 225 66 374 289 0 0 chr12 102794125 102794208 -40992247 - MIR SINE MIR -157 105 23 187 265 29 44 chr12 102794658 102794726 -40991729 + MIR SINE MIR 84 150 -112 2292 109 0 0 chr12 102795119 102795423 -40991032 + AluSc SINE Alu 1 304 -5 2010 126 16 19 chr12 102795571 102795881 -40990574 - AluSx SINE Alu -3 309 1 1532 196 18 15 chr12 102796264 102796600 -40989855 + Charlie1a DNA MER1_type 1117 1453 -2 3732 149 8 0 chr12 102797575 102798097 -40988358 + MER1A DNA MER1_type 1 526 -1 351 282 18 18 chr12 102798163 102798273 -40988182 + MER103 DNA DNA 14 123 -43 383 250 77 19 chr12 102798477 102798581 -40987874 + MIR SINE MIR 2 111 -151 374 256 83 60 chr12 102798821 102798989 -40987466 + MIR SINE MIR 50 221 -41 246 344 65 0 chr12 102799048 102799141 -40987314 + L2 LINE L2 3168 3266 -6 286 238 16 168 chr12 102799185 102799370 -40987085 - MIR SINE MIR -56 206 50 826 233 109 5 chr12 102800279 102800472 -40985983 + MER58A DNA MER1_type 1 213 -11 1715 261 114 24 chr12 102801072 102801615 -40984840 - MLT1E LTR MaLR -1 592 1 27 0 0 0 chr12 102802495 102802522 -40983933 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr12 102804081 102804104 -40982351 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 220 304 0 0 chr12 102804288 102804344 -40982111 + L3b LINE CR1 1244 1299 -284 475 310 89 0 chr12 102804580 102804774 -40981681 - MIR SINE MIR -13 249 37 308 246 0 0 chr12 102804992 102805053 -40981402 - L2 LINE L2 -3 3269 3209 3198 149 50 10 chr12 102805226 102805802 -40980653 + L1MA8 LINE L1 5690 6288 -3 1665 133 0 54 chr12 102806044 102806322 -40980133 + AluSg SINE Alu 46 308 -2 288 53 0 0 chr12 102807619 102807657 -40978798 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 229 328 24 56 chr12 102807657 102807782 -40978673 - L2 LINE L2 -13 3259 3139 216 0 0 0 chr12 102808240 102808264 -40978191 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr12 102808522 102808544 -40977911 + AT_rich Low_complexity Low_complexity 1 22 0 524 316 35 41 chr12 102808775 102808946 -40977509 + MIR SINE MIR 4 173 -89 1122 299 118 12 chr12 102808951 102809452 -40977003 + MLT1K LTR MaLR 2 555 -33 195 162 0 0 chr12 102809804 102809841 -40976614 + GA-rich Low_complexity Low_complexity 2 38 0 420 272 144 10 chr12 102810150 102810352 -40976103 - MIR SINE MIR -13 249 21 338 283 94 13 chr12 102811196 102811355 -40975100 - MIR SINE MIR -1 261 90 387 237 13 0 chr12 102811450 102811526 -40974929 + L2 LINE L2 3237 3313 0 681 199 0 0 chr12 102811526 102811682 -40974773 + (TGGA)n Simple_repeat Simple_repeat 2 157 0 855 183 0 0 chr12 102811693 102811873 -40974582 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 202 250 0 0 chr12 102811966 102812014 -40974441 - L2 LINE L2 -240 3032 2985 298 298 58 25 chr12 102812645 102812766 -40973689 - MIR SINE MIR -63 145 21 279 122 0 0 chr12 102813136 102813185 -40973270 + (TG)n Simple_repeat Simple_repeat 2 50 0 258 309 32 32 chr12 102813670 102813793 -40972662 - L2 LINE L2 -638 2676 2554 675 290 162 27 chr12 102814760 102815167 -40971288 - MLT1J LTR MaLR -49 462 1 269 397 27 0 chr12 102815203 102815387 -40971068 + L2 LINE L2 2863 3051 -221 377 284 18 9 chr12 102815656 102815765 -40970690 + MER5B DNA MER1_type 67 176 -2 267 336 41 8 chr12 102815944 102816066 -40970389 - MIR3 SINE MIR -12 196 71 210 171 43 0 chr12 102816472 102816542 -40969913 + (TA)n Simple_repeat Simple_repeat 2 74 0 814 190 0 0 chr12 102818348 102818469 -40967986 + FLAM_A SINE Alu 1 121 -12 255 31 0 0 chr12 102818796 102818828 -40967627 + (TC)n Simple_repeat Simple_repeat 1 32 0 309 51 0 0 chr12 102818830 102818869 -40967586 + (CA)n Simple_repeat Simple_repeat 2 40 0 2005 152 0 0 chr12 102819638 102819934 -40966521 - AluSx SINE Alu -16 296 1 242 179 18 0 chr12 102820481 102820537 -40965918 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 497 355 43 17 chr12 102820570 102820801 -40965654 - MIR SINE MIR 0 262 26 2318 57 0 0 chr12 102821251 102821531 -40964924 + AluY SINE Alu 27 306 -5 851 280 60 51 chr12 102821540 102821890 -40964565 - MLT1K LTR MaLR -158 430 78 237 252 75 150 chr12 102822133 102822280 -40964175 - L2 LINE L2 0 3272 3137 532 298 42 0 chr12 102822634 102822802 -40963653 + MIR SINE MIR 73 247 -15 283 280 32 32 chr12 102822854 102822947 -40963508 - MIR SINE MIR -82 126 34 453 352 22 6 chr12 102823658 102823840 -40962615 + MIR SINE MIR 16 200 -62 2039 147 0 0 chr12 102824326 102824626 -40961829 + AluSx SINE Alu 1 300 -12 190 269 45 15 chr12 102825232 102825299 -40961156 + MIR SINE MIR 84 145 -63 233 322 0 0 chr12 102825329 102825419 -40961036 + L1MC4 LINE L1 6614 6703 -1339 * 317 267 0 0 chr12 102825415 102825505 -40960950 - L1MC4 LINE L1 -1339 6703 6614 245 309 43 0 chr12 102825428 102825522 -40960933 + L1MC4 LINE L1 6615 6712 -1330 * 693 246 27 16 chr12 102825645 102825828 -40960627 - MIR SINE MIR -75 187 3 279 0 0 0 chr12 102826143 102826174 -40960281 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1725 158 10 29 chr12 102827338 102827648 -40958807 - AluJo SINE Alu -4 308 5 454 321 25 6 chr12 102827941 102828100 -40958355 + MIR SINE MIR 82 243 -19 262 298 137 25 chr12 102828272 102828433 -40958022 - L2 LINE L2 -222 3050 2872 1028 266 35 32 chr12 102828759 102829213 -40957242 - MLT1H LTR MaLR -2 547 12 1202 291 69 62 chr12 102830629 102831197 -40955258 + MLT1K LTR MaLR 1 572 -16 219 286 13 39 chr12 102832146 102832223 -40954232 + L2 LINE L2 3193 3267 -5 191 333 48 0 chr12 102832319 102832382 -40954073 - L3 LINE CR1 -602 975 910 950 107 17 17 chr12 102832424 102832524 -40953931 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 950 107 17 17 chr12 102832524 102832702 -40953753 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4803 231 79 24 chr12 102833297 102834917 -40951538 - L1ME1 LINE L1 -44 6191 4372 843 144 0 15 chr12 102834917 102835049 -40951406 - FLAM_C SINE Alu -2 131 2 4803 231 79 24 chr12 102835049 102835945 -40950510 - L1ME1 LINE L1 -1863 4372 3527 813 253 5 9 chr12 102835959 102836180 -40950275 - L1ME1 LINE L1 -4364 2032 1813 2333 251 44 86 chr12 102836184 102837389 -40949066 - L1ME1 LINE L1 -5205 1191 38 429 256 62 68 chr12 102837528 102837880 -40948575 + HAL1b LINE L1 647 996 -352 37241 44 2 1 chr12 102837886 102842685 -40943770 + L1P LINE L1 1 4803 -1343 316 356 120 17 chr12 102842864 102843156 -40943299 + L2 LINE L2 2034 2355 -959 2327 111 0 0 chr12 102843304 102843611 -40942844 + AluSx SINE Alu 3 309 -3 1095 148 46 1 chr12 102843613 102843858 -40942597 - L1M3 LINE L1 -708 5472 5219 411 231 44 19 chr12 102844653 102844813 -40941642 - MER103 DNA DNA 0 166 3 229 245 10 20 chr12 102845107 102845205 -40941250 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 2238 104 49 14 chr12 102845212 102845558 -40940897 - THE1B LTR MaLR 0 364 7 35852 82 8 17 chr12 102845955 102848821 -40937634 + L1PA6 LINE L1 11 2901 -3253 2236 108 3 3 chr12 102848821 102849128 -40937327 + AluY SINE Alu 1 307 -4 35852 82 8 17 chr12 102849128 102852464 -40933991 + L1PA6 LINE L1 2901 6154 0 1923 109 16 87 chr12 102852477 102852799 -40933656 + AluSq SINE Alu 3 301 -12 2027 127 7 7 chr12 102852802 102853093 -40933362 + AluSx SINE Alu 1 291 -21 405 342 15 10 chr12 102854223 102854419 -40932036 - MER117 DNA MER1_type 0 197 1 225 344 183 17 chr12 102855444 102855624 -40930831 + MIR SINE MIR 38 247 -15 2892 264 77 41 chr12 102855719 102858781 -40927674 + L1MEc LINE L1 17 3142 -3073 810 115 16 44 chr12 102858837 102859019 -40927436 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 294 29 0 0 chr12 102859043 102859078 -40927377 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 258 257 0 0 chr12 102859078 102859159 -40927296 + L1MEc LINE L1 1421 1492 -4892 308 288 98 35 chr12 102859232 102859460 -40926995 - MIR SINE MIR -16 246 1 829 292 21 8 chr12 102859501 102859737 -40926718 - MIR SINE MIR -22 240 2 205 171 0 0 chr12 102860078 102860113 -40926342 + T-rich Low_complexity Low_complexity 5 39 0 2030 77 0 0 chr12 102860605 102860865 -40925590 + AluY SINE Alu 44 303 -8 990 147 0 19 chr12 102860919 102861075 -40925380 + AluJo SINE Alu 22 174 -138 638 209 0 45 chr12 102861130 102861264 -40925191 + AluJo SINE Alu 173 300 -12 22 56 0 0 chr12 102862572 102862608 -40923847 + AT_rich Low_complexity Low_complexity 1 36 0 515 179 28 14 chr12 102863527 102863672 -40922783 + GA-rich Low_complexity Low_complexity 3 149 0 289 317 0 0 chr12 102864315 102864397 -40922058 + L2 LINE L2 2677 2758 -556 1269 183 4 23 chr12 102864417 102864674 -40921781 + MLT2B1 LTR ERVL 3 254 -266 37380 76 8 6 chr12 102864674 102870811 -40915644 - L1PA5 LINE L1 -1 6153 2 663 210 166 10 chr12 102870843 102871048 -40915407 + MLT2B1 LTR ERVL 284 520 0 356 299 68 122 chr12 102871101 102871202 -40915253 + L2 LINE L2 2827 2932 -340 627 209 51 98 chr12 102871202 102871437 -40915018 - MER58A DNA MER1_type 0 224 1 356 299 68 122 chr12 102871437 102871725 -40914730 + L2 LINE L2 2932 3190 -82 2305 97 3 3 chr12 102871725 102872023 -40914432 - AluSc SINE Alu -11 298 1 356 299 68 122 chr12 102872023 102872091 -40914364 + L2 LINE L2 3190 3260 -12 600 261 14 7 chr12 102872283 102872425 -40914030 - MER5B DNA MER1_type 0 178 36 1215 233 52 48 chr12 102872425 102872885 -40913570 - MLT1C LTR MaLR 0 467 6 186 71 0 0 chr12 102873226 102873254 -40913201 + (A)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr12 102874483 102874531 -40911924 + A-rich Low_complexity Low_complexity 1 48 0 2586 170 25 6 chr12 102875246 102875722 -40910733 + MER31A LTR ERV1 1 485 0 781 286 59 48 chr12 102875964 102876547 -40909908 - L2 LINE L2 -1 3312 2714 182 300 20 0 chr12 102876544 102876594 -40909861 + L2 LINE L2 2729 2779 -535 * 602 273 79 44 chr12 102876909 102877136 -40909319 - MIR SINE MIR -9 253 19 819 302 133 28 chr12 102877250 102877723 -40908732 + MLT1K LTR MaLR 66 588 0 1105 188 9 48 chr12 102877812 102878091 -40908364 + L1MC3 LINE L1 5580 5807 -377 244 0 56 0 chr12 102878091 102878127 -40908328 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 40016 41 21 2 chr12 102878127 102884144 -40902311 - L1PA2 LINE L1 -16 6139 3 15737 36 0 0 chr12 102884143 102886161 -40900294 - L1P LINE L1 -2806 3340 1323 * 973 9 0 0 chr12 102886161 102886268 -40900187 - U6 snRNA snRNA 0 107 1 338 279 32 85 chr12 102886367 102886614 -40899841 - MLT1J LTR MaLR 0 511 278 1204 250 173 2 chr12 102886661 102887061 -40899394 + MLT1H LTR MaLR 81 548 -1 736 219 0 95 chr12 102887594 102887804 -40898651 - AluJo SINE Alu -21 291 102 380 349 7 48 chr12 102888125 102888397 -40898058 + L3 LINE CR1 523 783 -794 400 383 23 33 chr12 102888597 102888811 -40897644 + L2 LINE L2 3060 3271 -1 7540 12 1 1 chr12 102889026 102890050 -40896405 + L1HS LINE L1 5132 6155 0 1761 198 0 0 chr12 102890092 102890400 -40896055 + AluJb SINE Alu 1 308 -4 982 235 27 0 chr12 102890585 102890806 -40895649 + Charlie1 DNA MER1_type 1 227 -2534 547 239 0 0 chr12 102890812 102890942 -40895513 + Charlie1 DNA MER1_type 2632 2761 0 430 322 161 14 chr12 102890946 102891157 -40895298 + MIR SINE MIR 21 262 0 320 275 46 21 chr12 102891705 102891843 -40894612 - MIR3 SINE MIR -4 204 63 425 290 43 36 chr12 102891852 102891990 -40894465 - MIR SINE MIR -75 187 49 480 280 73 0 chr12 102893370 102893520 -40892935 + MIR SINE MIR 46 206 -56 644 262 71 77 chr12 102893567 102893918 -40892537 - MLT1I LTR MaLR -6 403 55 300 351 30 15 chr12 102895800 102895934 -40890521 + L2 LINE L2 3137 3272 0 2585 172 51 24 chr12 102896092 102897006 -40889449 - L1MC3 LINE L1 -10 7775 6760 338 186 0 29 chr12 102897006 102897076 -40889379 + MLT1A1 LTR MaLR 1 68 -360 30 0 0 0 chr12 102897275 102897305 -40889150 + AT_rich Low_complexity Low_complexity 1 30 0 767 241 25 10 chr12 102897370 102897569 -40888886 + MLT1A1 LTR MaLR 164 365 0 4119 170 34 33 chr12 102897569 102897719 -40888736 - L1MC3 LINE L1 -1021 6764 6616 1834 184 7 0 chr12 102897719 102898024 -40888431 - AluJb SINE Alu -5 307 1 4119 170 34 33 chr12 102898024 102898793 -40887662 - L1MC3 LINE L1 -1169 6616 5844 8957 36 1 0 chr12 102898793 102899943 -40886512 + L1P LINE L1 1712 2862 -3284 307 248 241 21 chr12 102901041 102901186 -40885269 + MIR SINE MIR 86 262 0 183 42 0 0 chr12 102902047 102902071 -40884384 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 303 204 118 104 chr12 102903559 102903770 -40882685 + L1ME4a LINE L1 5906 6119 -2 2094 113 7 0 chr12 102903840 102904133 -40882322 - AluSx SINE Alu -17 295 1 232 208 8 176 chr12 102904555 102904680 -40881775 - MER46C DNA MER2_type -234 104 1 329 214 97 29 chr12 102905217 102905320 -40881135 - L2 LINE L2 -4 3309 3200 287 316 98 35 chr12 102905355 102905529 -40880926 + L2 LINE L2 3129 3313 0 386 333 62 74 chr12 102905607 102906126 -40880329 + L2 LINE L2 2563 3084 -188 29 47 0 0 chr12 102908788 102908831 -40877624 + GC_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr12 102908864 102908901 -40877554 + GC_rich Low_complexity Low_complexity 1 37 0 780 290 6 15 chr12 102909177 102909508 -40876947 - L1PA13 LINE L1 0 6163 5836 851 130 55 0 chr12 102910726 102910749 -40875706 - AluSg/x SINE Alu -5 305 285 459 0 0 0 chr12 102910749 102910800 -40875655 + (TG)n Simple_repeat Simple_repeat 2 52 0 851 130 55 0 chr12 102910800 102910922 -40875533 - AluSg/x SINE Alu -25 285 152 2507 50 0 3 chr12 102911233 102911531 -40874924 + AluY SINE Alu 1 297 -14 404 301 44 55 chr12 102912186 102912369 -40874086 + MIR SINE MIR 36 216 -46 246 316 0 0 chr12 102912432 102912508 -40873947 + (TA)n Simple_repeat Simple_repeat 1 76 0 340 278 0 21 chr12 102913269 102913366 -40873089 - L2 LINE L2 -1 3312 3218 201 74 0 0 chr12 102913927 102913954 -40872501 + (CATA)n Simple_repeat Simple_repeat 2 28 0 317 93 19 0 chr12 102913974 102914028 -40872427 + (TG)n Simple_repeat Simple_repeat 2 56 0 24 0 0 0 chr12 102914226 102914250 -40872205 + AT_rich Low_complexity Low_complexity 1 24 0 287 289 86 47 chr12 102914499 102914627 -40871828 - L2 LINE L2 -4 3268 3136 2274 64 0 0 chr12 102914692 102915002 -40871453 - AluY SINE Alu 0 310 1 223 365 71 46 chr12 102915040 102915322 -40871133 + L2 LINE L2 2951 3239 -33 21 0 0 0 chr12 102916690 102916711 -40869744 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 102916874 102916897 -40869558 + AT_rich Low_complexity Low_complexity 1 23 0 670 291 152 49 chr12 102916903 102917464 -40868991 - L1MD2 LINE L1 -302 5819 5266 2270 112 0 13 chr12 102917706 102918019 -40868436 + AluSc SINE Alu 1 309 0 272 286 52 52 chr12 102918030 102918091 -40868364 + HAL1 LINE L1 1658 1718 -789 2151 197 108 92 chr12 102918091 102918902 -40867553 - LTR1B LTR ERV1 0 826 3 272 286 52 52 chr12 102918902 102918994 -40867461 + HAL1 LINE L1 1717 1811 -696 1138 171 8 25 chr12 102919002 102919241 -40867214 - MER21B LTR ERV1 0 863 629 825 218 47 0 chr12 102919249 102919419 -40867036 - MER21B LTR ERV1 -685 178 1 341 268 46 59 chr12 102919424 102919663 -40866792 + HAL1 LINE L1 1814 2049 -458 1182 271 73 31 chr12 102919689 102920457 -40865998 + L1M4 LINE L1 3186 3985 -2161 1446 194 11 81 chr12 102920459 102920893 -40865562 + MER83B-int LTR ERV1 1132 3360 -3401 1460 278 83 20 chr12 102920897 102922007 -40864448 + L1M4 LINE L1 3995 5301 -845 2328 141 116 0 chr12 102922118 102922550 -40863905 - MER41E LTR ERV1 0 512 31 4193 150 8 4 chr12 102922550 102923258 -40863197 + MER50 LTR ERV1 1 711 -23 519 191 6 44 chr12 102923347 102923530 -40862925 + CT-rich Low_complexity Low_complexity 1 176 0 384 288 25 75 chr12 102923531 102923597 -40862858 + MIR SINE MIR 43 111 -151 2214 179 15 0 chr12 102923597 102923994 -40862461 - MER57A LTR ERV1 0 403 1 384 288 25 75 chr12 102923994 102924087 -40862368 + MIR SINE MIR 111 194 -68 306 324 59 0 chr12 102924111 102924213 -40862242 + L1M4 LINE L1 3724 3831 -2315 282 233 0 0 chr12 102924251 102924324 -40862131 + MIR SINE MIR 133 205 -57 452 314 80 34 chr12 102924720 102925045 -40861410 + L1M4 LINE L1 4268 4607 -1539 21 57 0 0 chr12 102925058 102925093 -40861362 + AT_rich Low_complexity Low_complexity 1 35 0 1969 147 11 0 chr12 102925233 102925518 -40860937 + AluSg SINE Alu 6 293 -17 186 171 0 0 chr12 102925982 102926023 -40860432 + (CA)n Simple_repeat Simple_repeat 1 41 0 256 336 82 8 chr12 102926513 102926647 -40859808 - MIR SINE MIR -53 209 66 451 328 62 63 chr12 102926919 102927110 -40859345 + L2 LINE L2 2768 2958 -355 2141 109 19 51 chr12 102927110 102927485 -40858970 + THE1B LTR MaLR 2 364 0 451 328 62 63 chr12 102927485 102927555 -40858900 + L2 LINE L2 2958 3027 -286 1807 161 0 29 chr12 102927555 102927871 -40858584 + AluJo SINE Alu 1 307 -5 451 328 62 63 chr12 102927871 102928150 -40858305 + L2 LINE L2 3027 3309 -4 228 294 153 0 chr12 102931088 102931173 -40855282 - MIR SINE MIR -8 254 157 1226 188 46 106 chr12 102931248 102931636 -40854819 - MLT1A1 LTR MaLR 0 365 1 254 235 0 0 chr12 102932177 102932255 -40854200 - L1ME LINE L1 -725 5439 5362 387 0 0 0 chr12 102932326 102932369 -40854086 + (TG)n Simple_repeat Simple_repeat 2 44 0 945 305 41 14 chr12 102932408 102932991 -40853464 - L1ME LINE L1 -919 5227 4629 34 24 0 0 chr12 102933094 102933135 -40853320 + AT_rich Low_complexity Low_complexity 1 41 0 393 273 76 51 chr12 102933349 102933611 -40852844 - L1ME LINE L1 -1486 4660 4406 7122 57 8 0 chr12 102933611 102934839 -40851616 - L1PA7 LINE L1 -6 6148 4915 22 0 0 0 chr12 102934844 102934866 -40851589 + AT_rich Low_complexity Low_complexity 1 22 0 393 273 76 51 chr12 102934866 102934970 -40851485 - L1ME LINE L1 -1743 4403 4253 301 193 84 12 chr12 102934980 102935063 -40851392 - L1ME LINE L1 -1950 4196 4108 219 353 103 17 chr12 102935982 102936098 -40850357 - L2 LINE L2 -8 3264 3139 1683 239 122 30 chr12 102936181 102936724 -40849731 - MLT1E LTR MaLR 0 593 1 424 305 33 13 chr12 102936927 102937078 -40849377 - MIR SINE MIR -20 242 89 256 326 90 43 chr12 102937223 102937524 -40848931 - L2 LINE L2 -661 2653 2339 621 298 117 31 chr12 102937806 102938138 -40848317 + L2 LINE L2 2766 3154 -159 2336 179 104 66 chr12 102938138 102938838 -40847617 - LTR8A LTR ERV1 0 727 1 621 298 117 31 chr12 102938838 102938889 -40847566 + L2 LINE L2 3154 3199 -114 1167 258 58 75 chr12 102939252 102939748 -40846707 - L1MC/D LINE L1 -1994 5814 5327 354 262 24 12 chr12 102939758 102939842 -40846613 + L2 LINE L2 3185 3269 -3 362 298 35 28 chr12 102940770 102940911 -40845544 - L2 LINE L2 -8 3305 3164 232 239 60 15 chr12 102940956 102941023 -40845432 + MIR SINE MIR 180 249 -13 189 158 0 26 chr12 102940990 102941028 -40845427 + L2 LINE L2 3262 3298 -15 * 2096 126 64 14 chr12 102941382 102941739 -40844716 - THE1C LTR MaLR 0 375 1 286 373 108 20 chr12 102942030 102942486 -40843969 + L2 LINE L2 2434 2929 -385 202 343 119 32 chr12 102943380 102943657 -40842798 + L2 LINE L2 2437 2737 -577 489 250 76 8 chr12 102943727 102943859 -40842596 + MIR SINE MIR 121 261 -1 340 298 137 8 chr12 102943949 102944073 -40842382 + MIR SINE MIR 27 166 -96 2218 110 0 7 chr12 102944078 102944387 -40842068 - AluSg1 SINE Alu 0 309 3 267 366 60 19 chr12 102944416 102944684 -40841771 - L2 LINE L2 -1217 2097 1819 224 266 0 16 chr12 102944869 102944933 -40841522 - MIR SINE MIR -26 236 174 285 29 0 0 chr12 102944949 102944983 -40841472 + (TG)n Simple_repeat Simple_repeat 1 34 0 1867 139 4 0 chr12 102944987 102945274 -40841181 - AluSx SINE Alu 0 302 15 185 341 0 0 chr12 102945306 102945347 -40841108 - MIR SINE MIR -190 72 32 322 215 11 43 chr12 102945380 102945473 -40840982 - L2 LINE L2 0 3313 3224 2079 116 0 50 chr12 102945473 102945793 -40840662 + AluSg SINE Alu 1 304 -6 222 150 0 0 chr12 102946700 102946740 -40839715 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 36 40 0 0 chr12 102947870 102947920 -40838535 + AT_rich Low_complexity Low_complexity 1 50 0 243 325 16 8 chr12 102948846 102948972 -40837483 - L1ME LINE L1 -360 5761 5635 689 293 4 72 chr12 102948987 102949236 -40837219 + MIR SINE MIR 31 262 0 367 313 18 0 chr12 102949363 102949475 -40836980 + L2 LINE L2 3198 3311 -2 2841 121 7 2 chr12 102949559 102949990 -40836465 - MER57B LTR ERV1 0 434 2 441 264 114 55 chr12 102950346 102950566 -40835889 + MIR SINE MIR 28 260 -2 257 256 211 0 chr12 102951269 102951359 -40835096 - L2 LINE L2 0 3272 3164 22916 90 3 3 chr12 102951783 102955872 -40830583 + L1PA7 LINE L1 2063 6152 -2 231 224 20 0 chr12 102955900 102955949 -40830506 - MER5A DNA MER1_type -91 98 49 2503 68 0 3 chr12 102956024 102956335 -40830120 + AluY SINE Alu 1 310 -1 481 336 0 0 chr12 102956335 102956469 -40829986 + MER63A DNA MER1_type 74 207 -3 307 133 0 67 chr12 102956530 102956590 -40829865 + MER5B DNA MER1_type 1 56 -122 1424 246 77 8 chr12 102956906 102957296 -40829159 - MER74A LTR ERVL -9 549 133 226 255 53 21 chr12 102957380 102957474 -40828981 - MER74A LTR ERVL -461 97 1 214 242 61 15 chr12 102957618 102957684 -40828771 - L2 LINE L2 -2 3270 3202 1858 241 47 9 chr12 102958263 102958741 -40827714 + MLT1H LTR MaLR 14 549 0 386 318 74 42 chr12 102958741 102959035 -40827420 - MLT1L LTR MaLR -133 482 179 202 143 122 0 chr12 102960094 102960143 -40826312 + L3 LINE CR1 1248 1302 -275 231 276 17 0 chr12 102960164 102960222 -40826233 + GA-rich Low_complexity Low_complexity 2 60 0 430 297 34 43 chr12 102960272 102960481 -40825974 + L3 LINE CR1 1340 1546 -31 2202 104 0 0 chr12 102960482 102960788 -40825667 - AluSc SINE Alu 0 306 1 1800 145 51 43 chr12 102961443 102961815 -40824640 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr12 102963154 102963179 -40823276 + AT_rich Low_complexity Low_complexity 1 25 0 600 221 234 0 chr12 102963208 102963366 -40823089 - MER58A DNA MER1_type -29 195 1 265 280 174 68 chr12 102963369 102963655 -40822800 - L1M4 LINE L1 -906 5240 4986 216 86 0 0 chr12 102963655 102963690 -40822765 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 265 280 174 68 chr12 102963690 102964578 -40821877 - L1M4 LINE L1 -1160 4986 3942 2402 60 0 3 chr12 102964736 102965034 -40821421 - AluY SINE Alu -14 297 1 596 318 148 26 chr12 102965086 102965639 -40820816 + L2 LINE L2 2577 3207 -106 301 353 68 16 chr12 102966523 102966832 -40819623 + L1ME LINE L1 5321 5645 -476 424 242 26 26 chr12 102967171 102967324 -40819131 + L1ME4a LINE L1 5969 6121 0 240 345 96 28 chr12 102967437 102967614 -40818841 + L2 LINE L2 2898 3086 -186 722 70 61 5 chr12 102967748 102967966 -40818489 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 23 0 0 0 chr12 102969486 102969509 -40816946 + AT_rich Low_complexity Low_complexity 1 23 0 1605 201 13 0 chr12 102969883 102970191 -40816264 - AluJb SINE Alu 0 312 1 275 202 211 37 chr12 102970400 102970509 -40815946 - L2 LINE L2 -6 3307 3180 748 325 94 41 chr12 102971314 102971988 -40814467 - L2 LINE L2 0 3272 2560 426 291 68 50 chr12 102972056 102972215 -40814240 + MIR SINE MIR 8 167 -95 1790 179 11 37 chr12 102972215 102972590 -40813865 + MLT1A1 LTR MaLR 1 365 0 426 291 68 50 chr12 102972590 102972681 -40813774 + MIR SINE MIR 167 255 -7 482 250 37 53 chr12 102973682 102973870 -40812585 + MLT1K LTR MaLR 397 581 -7 194 395 82 0 chr12 102974125 102974320 -40812135 + MIR SINE MIR 1 211 -51 276 264 0 0 chr12 102974346 102974418 -40812037 + L2 LINE L2 3229 3300 -13 180 111 0 0 chr12 102974470 102974497 -40811958 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 186 329 76 38 chr12 102974666 102974745 -40811710 - L2 LINE L2 0 3272 3191 634 301 47 21 chr12 102974766 102975002 -40811453 - MIR SINE MIR 0 262 21 234 79 0 0 chr12 102975502 102975540 -40810915 - HY5 scRNA scRNA -46 38 1 674 336 92 11 chr12 102975882 102976239 -40810216 - L2 LINE L2 0 3313 2928 23893 37 8 0 chr12 102976943 102980624 -40805831 + L1PA4 LINE L1 2467 6154 -1 2136 107 0 0 chr12 102980743 102981052 -40805403 - AluSg1 SINE Alu 0 309 1 321 281 16 86 chr12 102982927 102983055 -40803400 - L2 LINE L2 0 3313 3195 319 298 9 44 chr12 102983088 102983212 -40803243 - MIR SINE MIR -66 142 36 460 325 31 12 chr12 102983655 102983910 -40802545 - L1ME4a LINE L1 -263 5858 5599 22 0 0 0 chr12 102984109 102984131 -40802324 + AT_rich Low_complexity Low_complexity 1 22 0 1722 236 96 59 chr12 102984178 102984542 -40801913 - L1ME3A LINE L1 -5 6165 5816 2701 124 51 15 chr12 102984542 102985010 -40801445 - MER31A LTR ERV1 0 485 1 1722 236 96 59 chr12 102985010 102985456 -40800999 - L1ME3A LINE L1 -354 5816 5325 589 301 88 91 chr12 102985586 102986625 -40799830 - L1MEc LINE L1 -4442 1783 793 1312 275 114 62 chr12 102987283 102988809 -40797646 - HAL1 LINE L1 0 2507 762 1633 194 7 0 chr12 102988809 102989098 -40797357 + AluJo SINE Alu 1 291 -21 1312 275 114 62 chr12 102989098 102989808 -40796647 - HAL1 LINE L1 -1745 762 90 541 240 137 11 chr12 102989955 102990130 -40796325 + MIR SINE MIR 57 253 -9 730 232 28 38 chr12 102990393 102990604 -40795851 - MER58A DNA MER1_type -12 212 4 227 278 192 13 chr12 102990662 102990813 -40795642 - MLT1J2 LTR MaLR -34 416 239 257 226 210 73 chr12 102990866 102990990 -40795465 - MLT1J2 LTR MaLR -307 143 3 665 262 141 15 chr12 102991084 102991290 -40795165 - MER45C DNA AcHobo -9 944 713 904 213 20 25 chr12 102991421 102991618 -40794837 - MER45C DNA AcHobo -757 196 1 537 295 82 14 chr12 102992034 102992241 -40794214 + MIR SINE MIR 42 262 0 1343 238 156 14 chr12 102993569 102994011 -40792444 - MLT1D LTR MaLR 0 505 1 382 310 91 68 chr12 102994075 102994427 -40792028 + L2 LINE L2 1661 2020 -1294 878 265 105 37 chr12 102994465 102994949 -40791506 + MLT1K LTR MaLR 36 581 -7 318 338 138 50 chr12 102994964 102995323 -40791132 + L2 LINE L2 2045 2371 -943 1514 219 45 62 chr12 102995323 102995794 -40790661 + MLT1C LTR MaLR 1 463 -4 318 338 138 50 chr12 102995794 102996117 -40790338 + L2 LINE L2 2371 2787 -527 293 182 50 0 chr12 102996117 102996216 -40790239 + (TA)n Simple_repeat Simple_repeat 2 105 0 352 345 124 37 chr12 102996319 102996667 -40789788 + L2 LINE L2 2923 3300 -13 220 331 79 8 chr12 102996828 102996955 -40789500 - L2 LINE L2 0 3272 3137 483 148 9 37 chr12 102997627 102997735 -40788720 + Charlie5 DNA MER1_type 2251 2355 -257 1536 87 4 37 chr12 102997771 102998013 -40788442 + L1PA8 LINE L1 5939 6172 0 405 247 0 12 chr12 102998733 102998818 -40787637 + MIR SINE MIR 41 124 -84 2641 45 0 0 chr12 102999505 102999816 -40786639 - AluY SINE Alu 0 311 1 428 253 0 10 chr12 103000289 103000388 -40786067 + MER3 DNA MER1_type 46 143 -66 1551 174 50 21 chr12 103000413 103000656 -40785799 + MER3 DNA MER1_type 2234 2493 -131 2444 71 0 0 chr12 103000656 103000965 -40785490 + AluY SINE Alu 2 310 -1 1551 174 50 21 chr12 103000965 103001101 -40785354 + MER3 DNA MER1_type 2493 2624 0 203 342 13 25 chr12 103001280 103001359 -40785096 - MIR SINE MIR -137 125 48 22 0 0 0 chr12 103001378 103001400 -40785055 + AT_rich Low_complexity Low_complexity 1 22 0 704 333 55 36 chr12 103001414 103001889 -40784566 + L1MA6 LINE L1 499 982 -5797 1040 274 11 16 chr12 103002011 103002391 -40784064 + L1MA6 LINE L1 2057 2434 -4415 13497 174 23 33 chr12 103002480 103003414 -40783041 + L1MA6 LINE L1 3236 4177 -2825 2197 99 14 0 chr12 103003414 103003697 -40782758 + AluSg SINE Alu 2 288 -22 13497 174 23 33 chr12 103003697 103006549 -40779906 + L1MA6 LINE L1 4177 6986 -16 266 337 0 0 chr12 103006617 103006703 -40779752 + MIR SINE MIR 156 241 -21 485 250 50 8 chr12 103007580 103007700 -40778755 + L2 LINE L2 3185 3309 -4 2568 50 0 0 chr12 103007916 103008216 -40778239 - AluY SINE Alu -10 301 2 1868 193 19 25 chr12 103008947 103009015 -40777440 + MLT1A1 LTR MaLR 5 72 -293 1272 177 4 25 chr12 103009015 103009252 -40777203 - MER46A DNA MER2_type -4 232 1 1868 193 19 25 chr12 103009252 103009546 -40776909 + MLT1A1 LTR MaLR 72 365 0 1008 215 88 47 chr12 103009606 103009945 -40776510 - MLT1C LTR MaLR -5 462 110 209 108 27 0 chr12 103010981 103011018 -40775437 + CT-rich Low_complexity Low_complexity 3 40 0 199 233 17 33 chr12 103011420 103011480 -40774975 - MIR SINE MIR -92 170 112 729 104 0 0 chr12 103011578 103011674 -40774781 + L1P LINE L1 3 98 -6048 * 32577 76 5 3 chr12 103011643 103016031 -40770424 + L1P LINE L1 580 4974 -1172 238 227 76 136 chr12 103016032 103016164 -40770291 + L2 LINE L2 3136 3259 -54 752 161 15 0 chr12 103016192 103016322 -40770133 - AluJo SINE Alu -178 134 3 239 292 292 0 chr12 103016363 103016493 -40769962 - MLT1J LTR MaLR -343 168 1 220 152 55 21 chr12 103016671 103016816 -40769639 + (TA)n Simple_repeat Simple_repeat 1 150 0 985 47 78 0 chr12 103016894 103017022 -40769433 + MER85 DNA T2_type 1 138 -1 289 119 0 0 chr12 103017022 103017064 -40769391 - MER85 DNA T2_type -12 127 86 2219 158 48 15 chr12 103018036 103018435 -40768020 - MSTA LTR MaLR 0 428 17 319 320 39 16 chr12 103018470 103018598 -40767857 + L2 LINE L2 3142 3272 0 452 150 0 0 chr12 103018791 103018871 -40767584 - AluS SINE Alu -2 307 228 1206 134 0 0 chr12 103018871 103019035 -40767420 - AluSq SINE Alu -143 170 7 1551 175 39 26 chr12 103019326 103019634 -40766821 - AluJo SINE Alu 0 312 1 195 42 0 0 chr12 103019761 103019785 -40766670 + (CA)n Simple_repeat Simple_repeat 2 25 0 2315 159 60 17 chr12 103020005 103020420 -40766035 + Tigger2a DNA MER2_type 1 433 -1 2080 136 39 49 chr12 103020479 103020869 -40765586 - MER61D LTR ERV1 0 501 116 663 286 87 0 chr12 103021097 103021293 -40765162 - MIR SINE MIR 0 262 50 318 358 37 72 chr12 103022474 103022795 -40763660 - L3b LINE CR1 -108 1475 1166 578 239 42 99 chr12 103024050 103024175 -40762280 - MIR SINE MIR -13 249 145 8790 26 2 1 chr12 103024175 103025988 -40760467 + L1PA3 LINE L1 4342 6155 0 578 239 42 99 chr12 103025988 103026125 -40760330 - MIR SINE MIR -117 145 2 280 289 57 82 chr12 103026768 103026962 -40759493 - MIR3 SINE MIR -17 191 3 2211 210 193 2 chr12 103027291 103027891 -40758564 - L1P LINE L1 -1881 4265 3551 1793 247 14 2 chr12 103027891 103028333 -40758122 - L1P LINE L1 -3557 2589 2143 335 311 83 39 chr12 103028334 103028514 -40757941 + L3b LINE CR1 1164 1351 -232 1240 234 14 66 chr12 103029897 103030247 -40756208 - MLT1A2 LTR MaLR 0 374 43 341 291 48 10 chr12 103030766 103030869 -40755586 - MIR SINE MIR -109 153 47 458 319 111 35 chr12 103031277 103031503 -40754952 + MIR SINE MIR 20 262 0 1913 125 32 11 chr12 103031584 103031864 -40754591 + AluSx SINE Alu 1 286 -26 243 61 0 0 chr12 103031864 103031897 -40754558 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 712 274 41 49 chr12 103032539 103032604 -40753851 - MIR SINE MIR -14 248 184 2176 118 3 0 chr12 103032604 103032900 -40753555 - AluSp SINE Alu -16 297 1 712 274 41 49 chr12 103032900 103033079 -40753376 - MIR SINE MIR -78 184 6 2131 115 77 3 chr12 103033132 103033471 -40752984 + THE1B LTR MaLR 1 364 0 204 303 15 0 chr12 103034081 103034147 -40752308 + L2 LINE L2 3244 3310 -3 198 313 24 36 chr12 103034155 103034238 -40752217 - L2 LINE L2 -75 3197 3116 978 221 73 52 chr12 103034786 103035075 -40751380 - L1ME1 LINE L1 -4 6162 5868 588 183 23 8 chr12 103035106 103035237 -40751218 - L1ME1 LINE L1 -917 5229 5097 * 873 229 89 91 chr12 103035232 103035783 -40750672 - L1ME1 LINE L1 -1433 4713 4164 24843 115 9 55 chr12 103035903 103041343 -40745112 - L1P LINE L1 -1017 5129 12 333 230 14 7 chr12 103041518 103041666 -40744789 + (TA)n Simple_repeat Simple_repeat 2 150 0 365 281 61 9 chr12 103041714 103041828 -40744627 - MIR SINE MIR -124 138 19 2999 154 91 2 chr12 103041921 103042461 -40743994 - LTR69 LTR ERVL 0 588 1 25 0 0 0 chr12 103042468 103042493 -40743962 + AT_rich Low_complexity Low_complexity 1 25 0 1781 181 0 28 chr12 103043290 103043611 -40742844 - AluJb SINE Alu 0 312 1 349 183 73 24 chr12 103043638 103043720 -40742735 - L2 LINE L2 -40 3273 3188 279 206 156 71 chr12 103043756 103043897 -40742558 + MIR SINE MIR 60 212 -50 195 42 0 0 chr12 103043911 103043935 -40742520 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2244 77 7 7 chr12 103044499 103044797 -40741658 - AluY SINE Alu -13 298 1 318 238 364 0 chr12 103045238 103045389 -40741066 + MIR SINE MIR 47 252 -10 377 265 71 0 chr12 103045474 103045572 -40740883 - MIR SINE MIR -13 249 145 180 0 0 0 chr12 103046999 103047019 -40739436 + (CAA)n Simple_repeat Simple_repeat 2 21 0 480 314 73 16 chr12 103047032 103047223 -40739232 - MIR SINE MIR -14 248 47 494 56 127 0 chr12 103047266 103047337 -40739118 - MADE1 DNA Mariner 0 80 1 198 373 18 45 chr12 103047430 103047540 -40738915 + MIR SINE MIR 1 107 -155 1120 83 7 0 chr12 103048384 103048528 -40737927 - AluY SINE Alu -166 145 1 268 301 89 16 chr12 103049395 103049518 -40736937 - MIR3 SINE MIR -46 162 31 184 286 0 0 chr12 103050681 103050723 -40735732 + L2 LINE L2 3255 3296 -17 251 382 29 7 chr12 103050736 103050872 -40735583 + L2 LINE L2 3124 3262 -10 626 242 43 32 chr12 103050897 103051083 -40735372 + MIR SINE MIR 32 219 -43 317 187 103 0 chr12 103051118 103051236 -40735219 - MLT1J2 LTR MaLR -19 431 289 582 283 21 43 chr12 103051696 103051975 -40734480 - MER102a DNA MER1_type -15 315 43 513 324 155 14 chr12 103052271 103052490 -40733965 + MIR SINE MIR 11 260 -2 1533 186 61 3 chr12 103052763 103052943 -40733512 - AluJo SINE Alu 0 312 107 2210 121 0 0 chr12 103052943 103053240 -40733215 - AluSq SINE Alu -5 308 12 1533 186 61 3 chr12 103053240 103053354 -40733101 - AluJo SINE Alu -205 107 1 186 382 32 0 chr12 103053518 103053641 -40732814 - MIR SINE MIR -133 129 3 319 311 126 10 chr12 103054411 103054617 -40731838 - MIR SINE MIR -32 230 1 21 0 0 0 chr12 103055157 103055178 -40731277 + AT_rich Low_complexity Low_complexity 1 21 0 2044 116 0 30 chr12 103055188 103055490 -40730965 + AluSc SINE Alu 1 293 -16 480 315 19 0 chr12 103055512 103055674 -40730781 + L2 LINE L2 525 689 -2625 255 200 120 0 chr12 103055689 103055764 -40730691 - MER58 DNA MER1_type -28 2392 2309 4449 276 85 17 chr12 103056178 103056689 -40729766 + L2 LINE L2 682 1157 -2157 2222 105 0 0 chr12 103056689 103057015 -40729440 - AluSq SINE Alu 0 326 1 4449 276 85 17 chr12 103057015 103058079 -40728376 + L2 LINE L2 1157 2365 -949 22 35 0 0 chr12 103058134 103058163 -40728292 + AT_rich Low_complexity Low_complexity 1 29 0 571 276 69 91 chr12 103058451 103059287 -40727168 + L1MEd LINE L1 440 1257 -4862 273 113 0 75 chr12 103059465 103059518 -40726937 + L2 LINE L2 2334 2382 -932 982 285 110 45 chr12 103059521 103060242 -40726213 + L2 LINE L2 2560 3313 0 2693 205 55 56 chr12 103060295 103060545 -40725910 - L1ME3 LINE L1 -38 6124 5875 510 159 0 0 chr12 103060545 103060633 -40725822 - L1MB7 LINE L1 -19 6165 6078 2693 205 55 56 chr12 103060633 103061398 -40725057 - L1ME3 LINE L1 -287 5875 5110 1628 195 7 20 chr12 103061398 103061701 -40724754 + AluJo SINE Alu 1 299 -13 2693 205 55 56 chr12 103061701 103061875 -40724580 - L1ME3 LINE L1 -1052 5110 4937 759 184 19 0 chr12 103061864 103062022 -40724433 - L1ME LINE L1 -441 5721 5561 * 2158 255 96 28 chr12 103062024 103063102 -40723353 - L1ME LINE L1 -743 5403 4253 2733 10 0 0 chr12 103063325 103063623 -40722832 - AluYa5 SINE Alu -13 298 1 229 331 91 54 chr12 103064573 103064981 -40721474 + L2 LINE L2 1935 2357 -957 180 0 0 0 chr12 103065109 103065129 -40721326 + (A)n Simple_repeat Simple_repeat 1 20 0 239 290 45 149 chr12 103065557 103065643 -40720812 - L2 LINE L2 -10 3262 3169 2292 108 3 0 chr12 103065643 103065939 -40720516 + AluSq SINE Alu 1 297 -16 239 290 45 149 chr12 103065939 103066073 -40720382 - L2 LINE L2 -103 3169 3065 433 373 0 13 chr12 103066130 103066366 -40720089 + LTR67 LTR ERVL 2 234 -323 285 378 39 13 chr12 103066707 103066863 -40719592 - L2 LINE L2 -217 3055 2896 268 330 0 21 chr12 103067310 103067440 -40719015 + CT-rich Low_complexity Low_complexity 1 127 0 240 270 161 22 chr12 103067647 103067784 -40718671 + MER103 DNA DNA 2 157 -9 185 173 269 0 chr12 103067926 103067978 -40718477 + L2 LINE L2 2703 2768 -546 587 236 127 0 chr12 103068530 103068695 -40717760 - MER5A DNA MER1_type 0 189 4 294 318 82 47 chr12 103068863 103069033 -40717422 + MIR SINE MIR 81 256 -6 360 0 0 0 chr12 103069346 103069386 -40717069 + (A)n Simple_repeat Simple_repeat 1 40 0 718 214 0 0 chr12 103069416 103069556 -40716899 - MER46A DNA MER2_type -89 147 8 228 369 92 8 chr12 103069771 103069901 -40716554 + L2 LINE L2 3125 3265 -7 428 246 9 35 chr12 103070784 103070898 -40715557 - MIR SINE MIR 0 262 152 346 275 70 48 chr12 103070909 103071138 -40715317 - LTR16C LTR ERVL 0 491 258 5560 164 22 19 chr12 103071465 103073459 -40712996 - L1MA10 LINE L1 -2 6332 4330 2659 188 25 0 chr12 103073471 103074039 -40712416 - L1MA10 LINE L1 -1909 4237 3656 1169 209 57 122 chr12 103074136 103074232 -40712223 - MLT1C LTR MaLR 0 467 366 4955 94 10 13 chr12 103074232 103074944 -40711511 - L1PB2 LINE L1 -8 6143 5434 1169 209 57 122 chr12 103074944 103075341 -40711114 - MLT1C LTR MaLR -101 366 6 285 320 94 39 chr12 103075871 103076074 -40710381 - MIR SINE MIR -29 233 20 263 349 23 30 chr12 103076287 103076419 -40710036 - MIR SINE MIR -130 132 2 573 311 131 29 chr12 103076592 103076936 -40709519 - L2 LINE L2 0 3313 2935 488 293 66 96 chr12 103076966 103077150 -40709305 - L2 LINE L2 -438 2876 2688 2026 141 0 0 chr12 103077150 103077433 -40709022 - AluSg SINE Alu -27 283 1 488 293 66 96 chr12 103077433 103077453 -40709002 - L2 LINE L2 -626 2688 2669 1705 178 44 0 chr12 103077453 103077728 -40708727 - AluJo SINE Alu -25 287 1 488 293 66 96 chr12 103077728 103078010 -40708445 - L2 LINE L2 -645 2669 2404 255 150 0 0 chr12 103078709 103078769 -40707686 + (CA)n Simple_repeat Simple_repeat 1 60 0 204 40 0 0 chr12 103078769 103078794 -40707661 + (TC)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr12 103078793 103078813 -40707642 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 800 226 10 15 chr12 103079651 103079850 -40706605 + MER3 DNA MER1_type 1 198 -11 504 0 0 0 chr12 103079889 103079945 -40706510 + (TG)n Simple_repeat Simple_repeat 2 57 0 1019 269 41 16 chr12 103080048 103080435 -40706020 - L1M4 LINE L1 -1992 4154 3758 1954 247 64 31 chr12 103080439 103081201 -40705254 - L1M4 LINE L1 -2437 3709 2973 2047 117 21 4 chr12 103081201 103081482 -40704973 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr12 103081482 103081502 -40704953 + (TA)n Simple_repeat Simple_repeat 2 21 0 1954 247 64 31 chr12 103081502 103081696 -40704759 - L1M4 LINE L1 -3172 2974 2721 246 262 78 0 chr12 103081718 103081821 -40704634 - L1ME LINE L1 -468 5653 5543 22 35 0 0 chr12 103082050 103082079 -40704376 + AT_rich Low_complexity Low_complexity 1 29 0 5568 131 28 4 chr12 103082083 103083170 -40703285 - L1PA7 LINE L1 -7 6147 5036 1329 226 29 48 chr12 103083285 103083700 -40702755 - MLT1C LTR MaLR -55 412 6 386 222 5 16 chr12 103085270 103085387 -40701068 + MIR SINE MIR 98 211 -51 189 191 21 21 chr12 103085463 103085510 -40700945 + MIR SINE MIR 216 262 0 195 42 0 0 chr12 103085534 103085558 -40700897 + (TTCTG)n Simple_repeat Simple_repeat 1 24 0 2149 126 3 0 chr12 103085603 103085905 -40700550 - AluSx SINE Alu -9 303 1 1417 269 74 49 chr12 103085926 103086480 -40699975 - MLT1G LTR MaLR -12 578 11 309 307 33 154 chr12 103086541 103086994 -40699461 - L2 LINE L2 -2583 731 334 520 236 136 68 chr12 103087273 103087453 -40699002 - MLT1L LTR MaLR -221 394 228 4809 102 9 18 chr12 103087453 103088186 -40698269 + L1PA15 LINE L1 5439 6165 0 520 236 136 68 chr12 103088186 103088373 -40698082 - MLT1L LTR MaLR -387 228 2 1823 151 0 25 chr12 103088468 103088747 -40697708 + AluSq SINE Alu 33 304 -9 205 300 45 45 chr12 103088805 103088915 -40697540 + L2 LINE L2 3125 3234 -79 831 296 87 21 chr12 103089659 103089993 -40696462 - L3 LINE CR1 -1 1576 1221 203 133 0 0 chr12 103090446 103090476 -40695979 + (TGG)n Simple_repeat Simple_repeat 2 31 0 448 241 86 11 chr12 103091300 103091474 -40694981 + MLT1J LTR MaLR 9 195 -316 394 218 29 48 chr12 103091512 103091667 -40694788 + L1MDa LINE L1 34 311 -6232 279 141 16 31 chr12 103091821 103091885 -40694570 + L1ME1 LINE L1 6084 6146 -20 841 314 96 93 chr12 103092112 103092915 -40693540 - L3 LINE CR1 -657 920 116 1279 301 87 11 chr12 103093099 103093684 -40692771 - L2 LINE L2 0 3313 2671 298 270 0 0 chr12 103093696 103093759 -40692696 - L2 LINE L2 0 3313 3251 1389 261 109 57 chr12 103093798 103094393 -40692062 - L2 LINE L2 -507 2807 2182 1774 190 46 153 chr12 103094395 103095207 -40691248 - LTR8A LTR ERV1 -2 725 1 1460 299 77 28 chr12 103095207 103095840 -40690615 - L2 LINE L2 -1129 2185 1522 386 335 127 16 chr12 103096333 103096578 -40689877 - L2 LINE L2 -411 2903 2632 1595 166 15 8 chr12 103096584 103097023 -40689432 + AluSx SINE Alu 39 479 0 1206 95 0 6 chr12 103096844 103097090 -40689365 + (GAAA)n Simple_repeat Simple_repeat 3 247 0 919 319 46 49 chr12 103097090 103097657 -40688798 - L2 LINE L2 -652 2662 2098 291 315 85 31 chr12 103099924 103100054 -40686401 + L2 LINE L2 3171 3307 -6 402 353 26 52 chr12 103100797 103101029 -40685426 + MIR SINE MIR 2 227 -35 327 314 63 23 chr12 103101076 103101251 -40685204 - MIR SINE MIR -79 183 2 722 291 54 14 chr12 103101747 103102101 -40684354 - LTR33 LTR ERVL -82 439 72 196 222 28 93 chr12 103102176 103102284 -40684171 - L2 LINE L2 -172 3141 3041 571 70 0 0 chr12 103102290 103102361 -40684094 + FLAM SINE Alu 55 125 -18 1271 308 92 19 chr12 103102482 103103121 -40683334 - L2 LINE L2 -405 2909 2224 1273 237 94 22 chr12 103103144 103103607 -40682848 + MLT1H LTR MaLR 13 549 0 203 222 0 22 chr12 103103609 103103654 -40682801 - L2 LINE L2 -1099 2215 2172 1207 269 53 47 chr12 103103672 103104144 -40682311 - MLT1E LTR MaLR 0 593 119 546 291 24 18 chr12 103104142 103104307 -40682148 - MLT1E LTR MaLR -427 166 1 * 425 197 126 71 chr12 103104313 103104440 -40682015 - MER5B DNA MER1_type -24 154 21 366 287 169 7 chr12 103104430 103104566 -40681889 - MER5A DNA MER1_type -16 173 16 * 3928 265 79 95 chr12 103104571 103105562 -40680893 - L2 LINE L2 -1149 2165 1159 1011 198 63 5 chr12 103105562 103105769 -40680686 - MER20 DNA MER1_type 0 219 1 3928 265 79 95 chr12 103105769 103106852 -40679603 - L2 LINE L2 -2155 1159 126 193 365 0 14 chr12 103106937 103107011 -40679444 - L2 LINE L2 -3191 123 51 693 330 57 57 chr12 103107662 103108296 -40678159 - L2 LINE L2 -475 2839 2206 2040 135 73 0 chr12 103108313 103108654 -40677801 - MER47A DNA MER2_type 0 366 1 224 182 23 0 chr12 103108654 103108698 -40677757 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 236 259 60 52 chr12 103109043 103109159 -40677296 + LTR67 LTR ERVL 439 555 -2 365 289 63 13 chr12 103109383 103109542 -40676913 + L3 LINE CR1 739 905 -672 312 220 110 0 chr12 103109581 103109672 -40676783 - MER53 DNA DNA -88 101 1 275 349 99 32 chr12 103109679 103109963 -40676492 + L3 LINE CR1 903 1205 -372 278 318 0 9 chr12 103110028 103110135 -40676320 + LTR67 LTR ERVL 432 537 -20 378 298 123 25 chr12 103110294 103110529 -40675926 + L3 LINE CR1 1220 1477 -100 925 290 36 0 chr12 103110810 103111062 -40675393 - MIR SINE MIR 0 262 2 2303 103 0 6 chr12 103111295 103111607 -40674848 + AluSg SINE Alu 1 310 0 1927 130 76 17 chr12 103112839 103113193 -40673262 - THE1C LTR MaLR 0 375 1 977 311 52 61 chr12 103113824 103114365 -40672090 - MER115 DNA AcHobo -3 690 155 201 381 74 48 chr12 103114555 103114744 -40671711 - L2 LINE L2 -4 3268 3075 212 287 10 0 chr12 103115530 103115631 -40670824 + (TA)n Simple_repeat Simple_repeat 2 103 0 225 0 0 0 chr12 103115692 103115717 -40670738 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 103115737 103115759 -40670696 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr12 103115772 103115808 -40670647 + AT_rich Low_complexity Low_complexity 1 36 0 327 335 66 47 chr12 103115911 103116123 -40670332 - MIR SINE MIR -13 249 34 28 0 0 0 chr12 103116302 103116330 -40670125 + AT_rich Low_complexity Low_complexity 1 28 0 1536 88 0 0 chr12 103116339 103116554 -40669901 - L1PA13 LINE L1 0 6163 5949 231 217 0 33 chr12 103116572 103116632 -40669823 + CT-rich Low_complexity Low_complexity 1 58 0 433 262 34 27 chr12 103116637 103116786 -40669669 - L1ME LINE L1 -409 5712 5563 532 269 28 11 chr12 103117157 103117339 -40669116 + HAL1 LINE L1 2288 2472 -35 21 0 0 0 chr12 103117368 103117389 -40669066 + AT_rich Low_complexity Low_complexity 1 21 0 836 264 24 5 chr12 103117868 103118076 -40668379 + MIR SINE MIR 41 252 -10 247 343 128 52 chr12 103118153 103118325 -40668130 + MIR SINE MIR 4 188 -74 609 28 111 0 chr12 103118365 103118625 -40667830 + (TA)n Simple_repeat Simple_repeat 1 288 0 492 44 113 0 chr12 103118731 103118890 -40667565 + (TA)n Simple_repeat Simple_repeat 2 178 0 550 43 106 0 chr12 103118906 103119067 -40667388 + (TA)n Simple_repeat Simple_repeat 2 179 0 2448 77 0 0 chr12 103119122 103119420 -40667035 + AluY SINE Alu 1 298 -13 1694 230 91 35 chr12 103119729 103120269 -40666186 - MLT1E LTR MaLR -9 584 15 25 31 0 0 chr12 103120716 103120748 -40665707 + AT_rich Low_complexity Low_complexity 1 32 0 196 208 57 19 chr12 103121064 103121117 -40665338 + MIR SINE MIR 109 163 -99 21 36 0 0 chr12 103121159 103121187 -40665268 + AT_rich Low_complexity Low_complexity 1 28 0 1292 216 16 4 chr12 103121464 103121719 -40664736 + MIR SINE MIR 4 261 -1 184 330 80 27 chr12 103121701 103121813 -40664642 - L2 LINE L2 -13 3300 3183 * 195 333 0 0 chr12 103121832 103121886 -40664569 + L2 LINE L2 2429 2482 -832 739 268 129 0 chr12 103122190 103122414 -40664041 + MIR SINE MIR 2 254 -8 1899 256 37 37 chr12 103122546 103123117 -40663338 + MLT1E LTR MaLR 1 571 -22 194 327 106 9 chr12 103123130 103123243 -40663212 + L2 LINE L2 2979 3102 -170 33 0 0 0 chr12 103123877 103123910 -40662545 + AT_rich Low_complexity Low_complexity 1 33 0 383 98 0 0 chr12 103124897 103124962 -40661493 - MLT1D LTR MaLR 0 505 450 6791 194 24 5 chr12 103124962 103126259 -40660196 + L1MA4A LINE L1 2 1322 -5527 * 11427 165 28 27 chr12 103126254 103129882 -40656573 + L1MA4A LINE L1 3364 6983 -22 1361 211 124 17 chr12 103129890 103130293 -40656162 - MLT1D LTR MaLR -53 452 7 564 256 65 83 chr12 103132061 103132290 -40654165 - MIR SINE MIR -2 260 39 267 203 87 14 chr12 103132459 103132528 -40653927 - MER5A DNA MER1_type -77 112 39 340 287 64 0 chr12 103132573 103132667 -40653788 - MER5B DNA MER1_type 0 178 79 1729 145 4 22 chr12 103134200 103134469 -40651986 + AluSx SINE Alu 2 265 -47 734 59 0 10 chr12 103134481 103134582 -40651873 + (GGGAA)n Simple_repeat Simple_repeat 3 102 0 1124 98 0 25 chr12 103134683 103134989 -40651466 + (GGGAA)n Simple_repeat Simple_repeat 4 299 0 367 253 0 0 chr12 103135733 103135820 -40650635 - LTR33A LTR ERVL -4 519 433 349 312 55 30 chr12 103136288 103136487 -40649968 + L2 LINE L2 2479 2682 -632 277 281 25 94 chr12 103136487 103136646 -40649809 + MER20 DNA MER1_type 1 140 -79 1713 261 66 38 chr12 103136646 103137255 -40649200 - MLT1E2 LTR MaLR 0 626 1 277 281 25 94 chr12 103137255 103137330 -40649125 + MER20 DNA MER1_type 140 219 0 481 352 34 68 chr12 103137333 103137951 -40648504 + L2 LINE L2 2689 3272 0 189 296 86 12 chr12 103138069 103138150 -40648305 - MIR SINE MIR -71 191 105 2259 116 0 13 chr12 103138150 103138451 -40648004 + AluSc SINE Alu 1 297 -12 347 349 41 0 chr12 103138619 103138765 -40647690 - MIR SINE MIR -77 185 34 363 293 48 66 chr12 103139148 103139178 -40647277 - MLT1K LTR MaLR 0 588 559 2111 244 42 10 chr12 103139178 103139699 -40646756 + MLT1F LTR MaLR 5 542 0 363 293 48 66 chr12 103139699 103139941 -40646514 - MLT1K LTR MaLR -29 559 321 286 289 22 22 chr12 103140529 103140619 -40645836 - MIR SINE MIR -164 98 9 327 362 53 7 chr12 103141092 103141244 -40645211 + MIR SINE MIR 66 224 -38 2044 161 52 26 chr12 103141246 103141667 -40644788 + MSTB1 LTR MaLR 1 432 0 746 267 69 9 chr12 103142388 103142605 -40643850 + MIR SINE MIR 33 262 0 353 350 42 14 chr12 103143803 103143946 -40642509 + L3 LINE CR1 1332 1478 -99 397 278 34 22 chr12 103144083 103144242 -40642213 + MIR SINE MIR 15 174 -64 545 296 136 14 chr12 103144670 103144890 -40641565 - MIR SINE MIR -15 247 1 465 209 61 9 chr12 103144976 103145091 -40641364 + L1ME4a LINE L1 5999 6119 -2 2129 128 7 0 chr12 103145951 103146249 -40640206 - AluSx SINE Alu -12 300 1 270 309 65 50 chr12 103146356 103146557 -40639898 + L2 LINE L2 3029 3232 -40 395 273 0 0 chr12 103146557 103146645 -40639810 - MIR SINE MIR -78 130 43 549 268 0 66 chr12 103147497 103147680 -40638775 - MIR SINE MIR -2 260 90 639 129 7 34 chr12 103148120 103148267 -40638188 + (GGAA)n Simple_repeat Simple_repeat 4 146 0 224 276 207 43 chr12 103149871 103149987 -40636468 - L2 LINE L2 0 3272 3138 465 198 11 0 chr12 103149994 103150085 -40636370 - MER53 DNA DNA -94 95 4 994 181 0 0 chr12 103150116 103150282 -40636173 - FRAM SINE Alu 0 166 1 2060 133 71 66 chr12 103150327 103150928 -40635527 - L1MA9 LINE L1 -611 5701 5087 3298 157 14 24 chr12 103150928 103151554 -40634901 + L1MA9 LINE L1 5688 6307 -5 300 317 120 91 chr12 103151592 103152047 -40634408 - L2 LINE L2 -243 3029 2589 276 30 0 0 chr12 103152047 103152080 -40634375 + (TA)n Simple_repeat Simple_repeat 1 33 0 464 231 85 15 chr12 103152086 103152216 -40634239 - MIR SINE MIR -85 177 39 300 317 120 91 chr12 103152216 103152616 -40633839 - L2 LINE L2 -687 2585 2013 1904 175 39 11 chr12 103152616 103152971 -40633484 + MLT1A1 LTR MaLR 1 365 0 1847 141 0 14 chr12 103152998 103153274 -40633181 + AluSx SINE Alu 1 272 -40 1100 147 0 12 chr12 103153280 103153606 -40632849 + (GAA)n Simple_repeat Simple_repeat 2 323 0 7051 216 84 32 chr12 103153606 103154870 -40631585 + MLT1A1-int LTR MaLR 26 1394 -341 3641 136 3 3 chr12 103154870 103155436 -40631019 - L1PB3 LINE L1 -2 6152 5587 7051 216 84 32 chr12 103155436 103155797 -40630658 + MLT1A1-int LTR MaLR 1394 1735 0 1969 199 6 6 chr12 103155797 103156154 -40630301 + MLT1A1 LTR MaLR 1 357 -8 467 254 118 65 chr12 103156833 103157156 -40629299 + L1MEd LINE L1 321 660 -5459 211 297 66 22 chr12 103157560 103157651 -40628804 - L2 LINE L2 -1365 1949 1855 5222 187 29 35 chr12 103158569 103162771 -40623684 + L1MA9 LINE L1 3 5290 -1816 2178 49 0 8 chr12 103162771 103163038 -40623417 + AluY SINE Alu 35 299 -12 5222 187 29 35 chr12 103163038 103163108 -40623347 + L1MA9 LINE L1 5290 5359 -1747 * 5950 148 19 16 chr12 103163107 103164179 -40622276 + L1MA9 LINE L1 6197 7271 -1 1808 215 21 61 chr12 103164741 103165267 -40621188 - MLT1D LTR MaLR 0 505 1 339 25 0 0 chr12 103166197 103166237 -40620218 + (TC)n Simple_repeat Simple_repeat 1 40 0 288 0 0 0 chr12 103166236 103166268 -40620187 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 2239 129 24 16 chr12 103168686 103169058 -40617397 - THE1C LTR MaLR 0 375 1 563 258 206 12 chr12 103169541 103169871 -40616584 + L2 LINE L2 2919 3312 -1 905 190 11 17 chr12 103170067 103170246 -40616209 - MER5B DNA MER1_type 0 178 1 318 304 108 0 chr12 103171900 103172002 -40614453 - MIR3 SINE MIR -9 199 87 998 246 105 93 chr12 103173123 103173626 -40612829 - MLT1J LTR MaLR -2 509 1 895 246 118 59 chr12 103173749 103174208 -40612247 - MLT1H LTR MaLR -60 489 4 1025 263 111 38 chr12 103174987 103175327 -40611128 + L2 LINE L2 2749 3140 -173 1967 108 0 25 chr12 103175327 103175604 -40610851 - AluSc SINE Alu -39 270 1 1025 263 111 38 chr12 103175604 103175787 -40610668 + L2 LINE L2 3140 3308 -5 180 200 0 0 chr12 103175830 103175870 -40610585 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr12 103176324 103176352 -40610103 + AT_rich Low_complexity Low_complexity 1 28 0 308 358 52 36 chr12 103176718 103177048 -40609407 + L2 LINE L2 2545 2879 -435 634 284 126 14 chr12 103177351 103177566 -40608889 - MIR SINE MIR -15 247 9 310 250 21 42 chr12 103177659 103177755 -40608700 - MIR SINE MIR -75 133 40 393 317 97 11 chr12 103178034 103178220 -40608235 - MIR SINE MIR 0 262 61 2228 112 0 0 chr12 103178508 103178802 -40607653 - AluSx SINE Alu -18 294 1 663 104 0 0 chr12 103179091 103179187 -40607268 - AluY SINE Alu -10 301 206 510 79 0 0 chr12 103179872 103179948 -40606507 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2108 121 97 15 chr12 103180014 103180344 -40606111 - THE1B LTR MaLR -2 362 6 294 29 0 0 chr12 103180344 103180379 -40606076 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 27 29 0 0 chr12 103182332 103182366 -40604089 + AT_rich Low_complexity Low_complexity 1 34 0 34 65 0 0 chr12 103182579 103182641 -40603814 + AT_rich Low_complexity Low_complexity 1 62 0 672 31 0 31 chr12 103182981 103183079 -40603376 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 906 245 21 0 chr12 103183115 103183303 -40603152 + L1MB7 LINE L1 102 293 -6566 2171 181 2 23 chr12 103183376 103183774 -40602681 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr12 103183780 103183812 -40602643 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 103184003 103184024 -40602431 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 103184214 103184235 -40602220 + AT_rich Low_complexity Low_complexity 1 21 0 1681 246 14 8 chr12 103184236 103184813 -40601642 + L1MB7 LINE L1 2853 3393 -3564 7112 213 85 20 chr12 103184817 103186865 -40599590 + L1MB7 LINE L1 3896 6168 -827 1600 199 3 33 chr12 103186865 103187171 -40599284 + AluJo SINE Alu 1 297 -15 7112 213 85 20 chr12 103187171 103188047 -40598408 + L1MB7 LINE L1 6168 6986 -9 365 313 23 0 chr12 103188220 103188348 -40598107 + MIR SINE MIR 106 236 -26 2350 98 0 3 chr12 103188420 103188717 -40597738 - AluSx SINE Alu -14 298 3 405 263 94 25 chr12 103189395 103189555 -40596900 + MIR SINE MIR 6 176 -86 1432 189 128 0 chr12 103189721 103190027 -40596428 + MER2 DNA MER2_type 1 345 0 314 261 9 52 chr12 103190230 103190345 -40596110 + MIR SINE MIR 111 220 -42 246 287 20 50 chr12 103191188 103191289 -40595166 - MLT1J LTR MaLR -192 319 222 207 145 16 32 chr12 103191653 103191715 -40594740 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 761 211 8 0 chr12 103191851 103191979 -40594476 + FLAM_C SINE Alu 4 132 -11 293 250 43 0 chr12 103192549 103192641 -40593814 - L1MC4 LINE L1 -1333 6709 6614 226 260 0 62 chr12 103192559 103192655 -40593800 + L1MC4 LINE L1 6614 6703 -1339 * 268 353 0 10 chr12 103192655 103192670 -40593785 + (CA)n Simple_repeat Simple_repeat 2 16 -86 195 42 0 0 chr12 103192670 103192694 -40593761 + (TG)n Simple_repeat Simple_repeat 1 24 0 268 353 0 10 chr12 103192694 103192714 -40593741 + (CA)n Simple_repeat Simple_repeat 16 35 -67 2535 98 24 56 chr12 103192714 103193090 -40593365 - THE1B LTR MaLR 0 364 1 268 353 0 10 chr12 103193090 103193155 -40593300 + (CA)n Simple_repeat Simple_repeat 35 102 0 204 40 0 0 chr12 103193161 103193186 -40593269 + (TA)n Simple_repeat Simple_repeat 1 25 0 351 230 24 105 chr12 103193200 103193409 -40593046 - HAL1 LINE L1 -17 2490 2299 1899 170 10 6 chr12 103193414 103193725 -40592730 - AluJb SINE Alu 0 312 1 2208 184 65 69 chr12 103194013 103194232 -40592223 + MLT2B1 LTR ERVL 1 219 -301 617 69 11 0 chr12 103194232 103194319 -40592136 + (TC)n Simple_repeat Simple_repeat 1 88 0 2208 184 65 69 chr12 103194319 103194621 -40591834 + MLT2B1 LTR ERVL 219 520 0 503 188 9 0 chr12 103195196 103195308 -40591147 + CT-rich Low_complexity Low_complexity 2 114 0 2023 148 7 0 chr12 103195777 103196074 -40590381 + AluSx SINE Alu 1 299 -13 198 103 0 0 chr12 103197805 103197834 -40588621 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 197 232 43 72 chr12 103197854 103197923 -40588532 - L2 LINE L2 -40 3232 3166 231 241 0 60 chr12 103198170 103198253 -40588202 - L1P4 LINE L1 -300 5865 5788 314 283 254 24 chr12 103199301 103199506 -40586949 - L3 LINE CR1 -27 1550 1299 199 323 40 10 chr12 103199801 103199900 -40586555 - L3 LINE CR1 -316 1261 1160 703 340 50 58 chr12 103199910 103200681 -40585774 + L2 LINE L2 2482 3253 -19 1944 129 7 0 chr12 103200941 103201213 -40585242 + AluSx SINE Alu 28 301 -11 652 236 146 9 chr12 103201226 103201438 -40585017 + MIR SINE MIR 1 241 -21 832 178 23 29 chr12 103201470 103201644 -40584811 + MLT1A2 LTR MaLR 189 361 -13 195 319 42 0 chr12 103201661 103201733 -40584722 + MIR SINE MIR 113 187 -75 239 299 91 0 chr12 103201792 103201869 -40584586 + MIR SINE MIR 69 152 -110 2352 170 31 12 chr12 103201948 103202371 -40584084 + MER95 LTR ERV 1 431 0 32 75 0 0 chr12 103202371 103202438 -40584017 + AT_rich Low_complexity Low_complexity 1 67 0 718 227 12 31 chr12 103202651 103202814 -40583641 - MLT1A2 LTR MaLR -214 160 1 242 290 130 30 chr12 103202936 103203036 -40583419 - MER5B DNA MER1_type -68 110 1 205 291 191 37 chr12 103204731 103204802 -40581653 + MIR SINE MIR 20 79 -183 3063 116 36 20 chr12 103204802 103205252 -40581203 + MSTB2 LTR MaLR 1 457 0 205 291 191 37 chr12 103205252 103205369 -40581086 + MIR SINE MIR 79 237 -25 330 254 103 32 chr12 103205653 103205909 -40580546 + MLT1L LTR MaLR 252 565 -50 277 253 84 11 chr12 103206061 103206156 -40580299 - MIR SINE MIR -147 115 14 768 255 75 35 chr12 103206616 103206871 -40579584 - L2 LINE L2 0 3313 3049 331 294 55 0 chr12 103206884 103207030 -40579425 + HAL1b LINE L1 759 912 -436 321 341 40 29 chr12 103207175 103207348 -40579107 + MER117 DNA MER1_type 7 181 -16 209 246 98 16 chr12 103208713 103208774 -40577681 - L2 LINE L2 -17 3255 3190 277 395 58 19 chr12 103209152 103209463 -40576992 - L2 LINE L2 -453 2861 2539 241 333 98 66 chr12 103209958 103210141 -40576314 + MIR SINE MIR 15 203 -59 374 333 108 17 chr12 103210301 103210541 -40575914 + MLT1J2 LTR MaLR 189 450 0 216 0 0 0 chr12 103210892 103210916 -40575539 + (CA)n Simple_repeat Simple_repeat 1 24 0 2572 169 43 51 chr12 103211034 103211543 -40574912 + MLT1D LTR MaLR 1 505 0 2525 147 2 13 chr12 103212133 103212527 -40573928 + MLT1B LTR MaLR 1 390 0 276 298 0 0 chr12 103212695 103212779 -40573676 - MIR SINE MIR -4 258 175 182 103 0 26 chr12 103212798 103212837 -40573618 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 444 300 24 35 chr12 103215046 103215216 -40571239 - MIR SINE MIR -90 172 5 190 239 130 76 chr12 103216202 103216294 -40570161 - L3 LINE CR1 -931 646 550 2274 132 50 26 chr12 103216310 103216690 -40569765 - MSTA LTR MaLR 0 428 40 255 292 35 62 chr12 103217154 103217235 -40569220 + L2 LINE L2 3189 3268 -45 2980 107 60 0 chr12 103217235 103217666 -40568789 + L1PA11 LINE L1 5718 6174 0 255 292 35 62 chr12 103217666 103217697 -40568758 + L2 LINE L2 3268 3298 -15 * 790 241 47 70 chr12 103217696 103218009 -40568446 + L2 LINE L2 2899 3313 0 201 321 27 18 chr12 103218192 103218304 -40568151 + L2 LINE L2 2749 2861 -453 189 0 0 0 chr12 103219219 103219240 -40567215 + (TG)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr12 103219582 103219613 -40566842 + AT_rich Low_complexity Low_complexity 1 31 0 615 324 41 0 chr12 103219750 103219974 -40566481 + L1MC4a LINE L1 5616 5824 -297 347 272 0 72 chr12 103219985 103220110 -40566345 + L2 LINE L2 3197 3312 -1 21 36 0 0 chr12 103220356 103220384 -40566071 + AT_rich Low_complexity Low_complexity 1 28 0 368 314 145 6 chr12 103221493 103221652 -40564803 + MIR SINE MIR 30 210 -52 655 229 10 159 chr12 103222564 103222866 -40563589 + MIR SINE MIR 6 262 0 538 212 8 0 chr12 103223582 103223700 -40562755 - L1MA8 LINE L1 -4 6287 6169 658 125 0 36 chr12 103223700 103223812 -40562643 - L1M2 LINE L1 -498 5802 5695 2628 134 17 9 chr12 103223812 103224378 -40562077 + L1M2 LINE L1 5111 5689 -611 196 276 0 138 chr12 103224610 103224697 -40561758 + MIR SINE MIR 37 111 -97 22 0 0 0 chr12 103224778 103224800 -40561655 + AT_rich Low_complexity Low_complexity 1 22 0 1423 212 93 43 chr12 103225378 103225817 -40560638 + MLT1C LTR MaLR 6 466 -1 194 333 0 35 chr12 103226657 103226714 -40559741 + MIR SINE MIR 38 92 -116 187 254 55 0 chr12 103227351 103227406 -40559049 - MIR3 SINE MIR -7 201 144 503 232 122 50 chr12 103228661 103228842 -40557613 + MLT1K LTR MaLR 395 588 0 23 68 0 0 chr12 103229030 103229074 -40557381 + AT_rich Low_complexity Low_complexity 1 44 0 603 92 0 0 chr12 103229179 103229266 -40557189 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 624 242 110 30 chr12 103229313 103229577 -40556878 - L1ME4a LINE L1 -252 5869 5585 1487 226 25 58 chr12 103229690 103230238 -40556217 - MLT1E2 LTR MaLR 0 505 3 491 254 9 75 chr12 103232729 103232942 -40553513 + LTR33 LTR ERVL 22 220 -301 234 330 173 21 chr12 103233641 103233832 -40552623 - MIR SINE MIR -8 254 35 219 302 221 34 chr12 103233847 103233996 -40552459 + L2 LINE L2 1130 1306 -2008 1505 294 100 21 chr12 103234027 103235041 -40551414 + L2 LINE L2 2216 3312 -1 702 151 22 28 chr12 103235093 103235272 -40551183 + GA-rich Low_complexity Low_complexity 2 179 0 254 255 0 0 chr12 103235274 103235325 -40551130 + polypurine Low_complexity Low_complexity 1 51 0 8569 112 18 24 chr12 103235338 103235468 -40550987 - HSMAR2 DNA Mariner -1 1301 1172 2283 125 38 27 chr12 103235468 103235835 -40550620 - THE1C LTR MaLR 0 375 5 8569 112 18 24 chr12 103235835 103236671 -40549784 - HSMAR2 DNA Mariner -130 1172 343 2473 69 0 19 chr12 103236671 103236988 -40549467 - AluY SINE Alu 0 311 1 8569 112 18 24 chr12 103236988 103237329 -40549126 - HSMAR2 DNA Mariner -959 343 1 2027 181 87 42 chr12 103237332 103237813 -40548642 + MLT1D LTR MaLR 1 503 -2 476 217 0 0 chr12 103238035 103238127 -40548328 + MIR SINE MIR 74 165 -97 3425 140 121 0 chr12 103239120 103239698 -40546757 - L1PB4 LINE L1 -2 6154 5507 198 219 37 98 chr12 103239751 103239833 -40546622 - L2 LINE L2 -5 3308 3232 2449 129 16 19 chr12 103240087 103240452 -40546003 + THE1B LTR MaLR 1 364 0 11588 110 4 5 chr12 103240470 103242041 -40544414 + THE1B-int LTR MaLR 12 1580 0 2383 129 25 25 chr12 103242041 103242405 -40544050 + THE1B LTR MaLR 1 364 0 427 296 22 15 chr12 103242408 103242543 -40543912 - L2 LINE L2 -5 3308 3173 1728 206 45 6 chr12 103242544 103242874 -40543581 - MER2 DNA MER2_type -1 343 1 297 320 94 58 chr12 103243362 103243775 -40542680 + L2 LINE L2 2337 2764 -550 488 208 120 0 chr12 103243807 103243932 -40542523 + MER103 DNA DNA 8 147 -19 577 278 220 20 chr12 103244047 103244393 -40542062 + MLT1J LTR MaLR 95 509 -2 219 354 39 84 chr12 103245033 103245366 -40541089 + L2 LINE L2 2950 3267 -5 4069 155 50 58 chr12 103246364 103247156 -40539299 + MER54B LTR ERVL 8 793 0 3812 99 27 22 chr12 103247299 103247854 -40538601 + L1PB1 LINE L1 5593 6150 -1 27 29 0 0 chr12 103247854 103247888 -40538567 + AT_rich Low_complexity Low_complexity 1 34 0 225 270 22 11 chr12 103248856 103248945 -40537510 - LTR67 LTR ERVL -8 549 460 468 302 30 6 chr12 103249389 103249558 -40536897 + L2 LINE L2 3141 3313 0 452 265 192 0 chr12 103250555 103250706 -40535749 - MER5A DNA MER1_type 0 189 10 192 274 39 0 chr12 103252284 103252335 -40534120 - L2 LINE L2 -15 3298 3246 187 264 264 8 chr12 103252340 103252469 -40533986 + MIR SINE MIR 25 186 -76 432 0 0 0 chr12 103252473 103252521 -40533934 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 255 221 40 33 chr12 103252564 103252656 -40533799 - MIR SINE MIR -63 145 96 193 290 86 43 chr12 103253327 103253420 -40533035 - L2 LINE L2 -2 3270 3174 606 299 41 27 chr12 103253588 103253759 -40532696 + MIR SINE MIR 23 199 -63 1720 184 0 10 chr12 103253759 103254052 -40532403 + AluJo SINE Alu 1 290 -22 606 299 41 27 chr12 103254052 103254101 -40532354 + MIR SINE MIR 199 246 -16 507 307 58 22 chr12 103254289 103254514 -40531941 + MIR SINE MIR 1 233 -29 252 0 0 0 chr12 103255104 103255132 -40531323 + (A)n Simple_repeat Simple_repeat 1 28 0 385 218 26 26 chr12 103256498 103256654 -40529801 + (CATATA)n Simple_repeat Simple_repeat 1 156 0 1528 46 0 0 chr12 103256745 103256919 -40529536 - L1PA5 LINE L1 -2 6152 5979 1946 171 28 31 chr12 103257877 103257897 -40528558 - MLT1B LTR MaLR 0 390 371 2067 147 43 25 chr12 103257897 103258265 -40528190 + THE1C LTR MaLR 1 375 0 1946 171 28 31 chr12 103258265 103258635 -40527820 - MLT1B LTR MaLR -19 371 1 234 345 24 0 chr12 103258954 103259038 -40527417 + L2 LINE L2 3150 3235 -37 2051 138 0 0 chr12 103259687 103259976 -40526479 + AluSx SINE Alu 1 289 -23 788 352 82 16 chr12 103260710 103261139 -40525316 - L3 LINE CR1 -13 1564 1108 269 235 0 0 chr12 103261137 103261188 -40525267 - L2 LINE L2 0 3313 3263 * 211 242 113 0 chr12 103261189 103261251 -40525204 - L3 LINE CR1 -453 1124 1056 193 319 0 14 chr12 103261319 103261388 -40525067 - L3 LINE CR1 -542 1035 968 472 302 177 43 chr12 103261435 103261763 -40524692 - MLT1J2 LTR MaLR -34 416 45 537 344 111 31 chr12 103261806 103262222 -40524233 - L3 LINE CR1 -603 974 526 219 203 0 0 chr12 103262229 103262288 -40524167 + (TA)n Simple_repeat Simple_repeat 1 59 0 223 278 219 5 chr12 103262357 103262544 -40523911 - MIR SINE MIR -9 253 27 693 314 152 44 chr12 103262777 103263826 -40522629 + L2 LINE L2 1968 3232 -40 938 137 0 0 chr12 103263826 103263957 -40522498 - AluJb SINE Alu -13 299 169 734 216 26 0 chr12 103264944 103265097 -40521358 - MER5A DNA MER1_type -1 188 32 491 264 109 32 chr12 103265160 103265336 -40521119 - MIR SINE MIR -21 241 43 1452 191 46 11 chr12 103265336 103265619 -40520836 - AluJb SINE Alu -19 293 1 491 264 109 32 chr12 103265619 103265662 -40520793 - MIR SINE MIR -219 43 5 584 195 214 24 chr12 103266253 103266463 -40519992 + MIR SINE MIR 13 262 0 252 154 0 0 chr12 103266654 103266706 -40519749 + A-rich Low_complexity Low_complexity 1 52 0 545 290 54 13 chr12 103269637 103269861 -40516594 + MIR SINE MIR 25 257 -5 938 199 128 74 chr12 103269964 103270444 -40516011 + MLT1E3 LTR MaLR 1 611 -13 395 292 22 15 chr12 103270472 103270609 -40515846 + L2 LINE L2 2898 3035 -237 619 279 22 22 chr12 103270793 103270976 -40515479 - MIR SINE MIR -61 201 19 1524 207 96 76 chr12 103271136 103271425 -40515030 - MLT1C LTR MaLR 0 467 164 2267 93 0 10 chr12 103271425 103271725 -40514730 + AluSc SINE Alu 1 297 -12 1524 207 96 76 chr12 103271725 103271893 -40514562 - MLT1C LTR MaLR -303 164 1 1425 198 123 57 chr12 103272639 103273044 -40513411 + MSTB1 LTR MaLR 1 432 0 632 231 126 21 chr12 103274090 103274328 -40512127 + MER102a DNA MER1_type 68 330 0 10167 122 26 5 chr12 103274784 103276299 -40510156 - Tigger1 DNA MER2_type 0 2418 872 537 111 0 0 chr12 103276299 103276371 -40510084 - AluSg/x SINE Alu -21 288 217 1137 112 51 17 chr12 103276371 103276549 -40509906 + Tigger1 DNA MER2_type 1208 1391 -1027 1632 127 72 0 chr12 103276572 103276809 -40509646 - AluSx SINE Alu -58 254 1 5931 134 10 1 chr12 103276811 103277681 -40508774 - Tigger1 DNA MER2_type -1540 878 1 2476 58 0 0 chr12 103277681 103277973 -40508482 + AluY SINE Alu 1 292 -19 21 0 0 0 chr12 103278615 103278636 -40507819 + AT_rich Low_complexity Low_complexity 1 21 0 187 268 54 36 chr12 103278707 103278763 -40507692 - L2 LINE L2 -15 3257 3201 376 264 188 0 chr12 103278881 103279025 -40507430 - MLT1H LTR MaLR 0 549 379 2877 102 5 10 chr12 103279300 103279702 -40506753 + THE1C-int LTR MaLR 1181 1580 0 2094 152 52 19 chr12 103279702 103280065 -40506390 + THE1C LTR MaLR 1 375 0 359 372 84 22 chr12 103280240 103280608 -40505847 - L2 LINE L2 -632 2682 2292 253 156 109 31 chr12 103280668 103280732 -40505723 + MIR SINE MIR 20 88 -174 3703 163 48 3 chr12 103282436 103283013 -40503442 - MER77 LTR ERV1 -2 603 1 313 275 25 42 chr12 103284473 103284593 -40501862 - L2 LINE L2 -92 3221 3104 647 140 10 0 chr12 103285147 103285247 -40501208 + L1MA3 LINE L1 6199 6299 -6 353 238 0 0 chr12 103285495 103285558 -40500897 - L2 LINE L2 -3 3310 3248 221 268 0 0 chr12 103285931 103285987 -40500468 + MIR SINE MIR 37 92 -170 783 376 60 11 chr12 103286118 103286583 -40499872 - MLT1K LTR MaLR -63 525 38 398 309 163 49 chr12 103287172 103287329 -40499126 + L2 LINE L2 1694 1832 -1482 1943 164 42 89 chr12 103287329 103287780 -40498675 + MSTB1 LTR MaLR 1 430 -2 398 309 163 49 chr12 103287780 103288136 -40498319 + L2 LINE L2 1832 2266 -1048 482 346 80 28 chr12 103288163 103288562 -40497893 - L2 LINE L2 -1150 2164 1745 2203 108 0 25 chr12 103289064 103289380 -40497075 - AluSc SINE Alu -1 308 1 620 229 0 28 chr12 103289702 103289846 -40496609 - L2 LINE L2 -6 3307 3168 198 255 21 0 chr12 103289959 103290006 -40496449 - L2 LINE L2 -81 3232 3185 339 297 62 73 chr12 103290940 103291132 -40495323 - MIR SINE MIR -53 209 20 323 288 42 0 chr12 103291223 103291341 -40495114 - LTR67 LTR ERVL 0 557 435 267 149 99 33 chr12 103291501 103291574 -40494881 - MLT1J LTR MaLR -310 161 65 186 322 0 0 chr12 103292290 103292349 -40494106 - L2 LINE L2 -218 3054 2996 183 42 0 0 chr12 103292722 103292746 -40493709 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2096 106 13 30 chr12 103293029 103293330 -40493125 + AluSc SINE Alu 1 296 -13 23 0 0 0 chr12 103293355 103293378 -40493077 + AT_rich Low_complexity Low_complexity 1 23 0 788 296 195 30 chr12 103293794 103294255 -40492200 - L2 LINE L2 -1 3271 2735 1211 212 15 93 chr12 103294261 103294658 -40491797 - MLT1A2 LTR MaLR -8 366 1 197 310 26 78 chr12 103294658 103294774 -40491681 - L2 LINE L2 -573 2741 2632 1380 217 59 7 chr12 103295153 103295663 -40490792 - MLT1E3 LTR MaLR 0 624 40 240 59 0 0 chr12 103295803 103295837 -40490618 + (A)n Simple_repeat Simple_repeat 1 34 0 1577 167 86 30 chr12 103296174 103296355 -40490100 + Charlie1 DNA MER1_type 2343 2512 -249 1294 248 21 47 chr12 103296355 103296778 -40489677 - MER92A LTR ERV1 0 412 1 1577 167 86 30 chr12 103296778 103296991 -40489464 + Charlie1 DNA MER1_type 2512 2759 -2 365 373 59 18 chr12 103297024 103297193 -40489262 - MIR3 SINE MIR -17 191 16 390 91 0 0 chr12 103297400 103297455 -40489000 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 281 105 0 0 chr12 103298020 103298058 -40488397 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 579 308 95 60 chr12 103298433 103298507 -40487948 + L2 LINE L2 2527 2597 -716 819 281 89 78 chr12 103298507 103299023 -40487432 - LTR33A LTR ERVL -1 522 1 579 308 95 60 chr12 103299023 103299688 -40486767 + L2 LINE L2 2597 3293 -20 225 65 0 0 chr12 103300180 103300211 -40486244 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 184 305 85 28 chr12 103301051 103301192 -40485263 - L2 LINE L2 -4 3309 3161 253 305 164 34 chr12 103302039 103302216 -40484239 - L2 LINE L2 -188 3084 2885 2385 88 0 7 chr12 103302545 103302852 -40483603 + AluSq SINE Alu 1 305 -8 22 0 0 0 chr12 103303314 103303336 -40483119 + AT_rich Low_complexity Low_complexity 1 22 0 402 287 85 10 chr12 103304287 103304471 -40481984 - MLT1J2 LTR MaLR 0 427 264 358 302 25 31 chr12 103304515 103304674 -40481781 - MLT1J1 LTR MaLR -288 158 1 271 302 129 45 chr12 103304674 103304876 -40481579 - L2 LINE L2 -994 2320 2102 230 336 138 0 chr12 103305204 103305320 -40481135 + MIR SINE MIR 19 150 -58 671 241 19 31 chr12 103305348 103305558 -40480897 - MIR SINE MIR -11 251 48 242 329 12 0 chr12 103306491 103306576 -40479879 + L2 LINE L2 3222 3307 -6 249 307 31 39 chr12 103306603 103306730 -40479725 - L2 LINE L2 -61 3252 3127 299 236 8 57 chr12 103307277 103307400 -40479055 - LTR33A LTR ERVL -3 520 404 1707 218 112 108 chr12 103309214 103310025 -40476430 - MER21B LTR ERV1 -49 814 1 1826 175 45 13 chr12 103310283 103310661 -40475794 + MLT1B LTR MaLR 1 390 0 262 367 47 8 chr12 103310978 103311106 -40475349 - L2 LINE L2 -1 3271 3139 220 220 9 73 chr12 103312632 103312741 -40473714 + T-rich Low_complexity Low_complexity 2 103 0 260 239 43 22 chr12 103314181 103314273 -40472182 + L1MEc LINE L1 -65 28 -6233 330 297 93 34 chr12 103314285 103314403 -40472052 + L1MEc LINE L1 120 244 -6017 733 288 37 39 chr12 103314711 103315423 -40471032 + L1MEc LINE L1 520 1079 -5003 192 97 0 0 chr12 103315481 103315512 -40470943 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 21 71 0 0 chr12 103316165 103316207 -40470248 + AT_rich Low_complexity Low_complexity 1 42 0 433 294 119 16 chr12 103316585 103316711 -40469744 + L2 LINE L2 3134 3272 0 1201 204 48 70 chr12 103316904 103317277 -40469178 + MLT1A1 LTR MaLR 1 365 0 576 278 24 6 chr12 103319615 103319784 -40466671 - MIR3 SINE MIR -6 202 31 977 189 9 8 chr12 103319846 103320073 -40466382 + AluJb SINE Alu 1 310 -2 247 342 20 20 chr12 103320142 103320291 -40466164 + MIR SINE MIR 110 258 -4 210 219 0 0 chr12 103320376 103320417 -40466038 + (CA)n Simple_repeat Simple_repeat 2 42 0 577 246 8 0 chr12 103320817 103320947 -40465508 + MER94 DNA DNA 1 131 -3 1059 271 85 46 chr12 103320958 103321497 -40464958 - MLT1K LTR MaLR -27 561 2 503 297 20 0 chr12 103321522 103321670 -40464785 - MIR SINE MIR -1 261 111 704 221 162 17 chr12 103321681 103322117 -40464338 + MER34 LTR ERV1 12 542 0 381 263 11 11 chr12 103322119 103322214 -40464241 - MIR SINE MIR -150 112 18 2262 153 38 18 chr12 103322462 103322885 -40463570 + MSTB1 LTR MaLR 1 365 0 198 0 0 0 chr12 103322912 103322934 -40463521 + (A)n Simple_repeat Simple_repeat 1 22 0 661 328 29 12 chr12 103323872 103324116 -40462339 + MIR SINE MIR 15 262 0 1570 236 58 18 chr12 103324789 103325234 -40461221 - MLT1C LTR MaLR 0 467 5 332 275 55 37 chr12 103326386 103326495 -40459960 - L2 LINE L2 -8 3264 3154 496 192 24 108 chr12 103327097 103327236 -40459219 + MER5B DNA MER1_type 7 131 -47 2155 137 10 0 chr12 103327236 103327542 -40458913 + AluSx SINE Alu 1 309 -3 496 192 24 108 chr12 103327542 103327569 -40458886 + MER5B DNA MER1_type 131 159 -19 252 268 0 49 chr12 103327589 103327671 -40458784 + MER5A DNA MER1_type 10 87 -102 224 259 37 0 chr12 103327747 103327828 -40458627 - MER5A DNA MER1_type -99 90 7 * 643 277 28 0 chr12 103327818 103327959 -40458496 + MER5A DNA MER1_type 45 189 0 503 268 12 54 chr12 103328654 103328815 -40457640 + MIR SINE MIR 6 165 -68 723 211 80 6 chr12 103328927 103329102 -40457353 - MIR SINE MIR -38 224 37 1045 218 4 12 chr12 103329389 103329637 -40456818 + L1MB4 LINE L1 5935 6180 0 820 262 79 18 chr12 103330723 103330952 -40455503 - MIR SINE MIR -7 255 13 305 353 29 22 chr12 103330981 103331117 -40455338 - MIR SINE MIR -95 167 31 506 191 45 0 chr12 103331285 103331402 -40455053 + MLT1J2 LTR MaLR 16 139 -308 351 290 71 13 chr12 103331590 103331745 -40454710 + MLT1J2 LTR MaLR 287 450 0 533 204 153 7 chr12 103331913 103332050 -40454405 - L2 LINE L2 -537 2777 2621 515 219 84 14 chr12 103334476 103334691 -40451764 - LTR16C LTR ERVL -2 489 260 2497 50 10 0 chr12 103336885 103337186 -40449269 - AluY SINE Alu -7 304 1 328 354 60 52 chr12 103337278 103337837 -40448618 - L2 LINE L2 -37 3235 2634 210 316 149 18 chr12 103338593 103338707 -40447748 - MIR3 SINE MIR -78 130 2 365 341 21 38 chr12 103339318 103339532 -40446923 - MIR3 SINE MIR -27 181 7 624 255 189 10 chr12 103339717 103339913 -40446542 + MIR SINE MIR 20 250 -12 1892 171 0 7 chr12 103341068 103341378 -40445077 - AluSg SINE Alu -2 308 1 2143 122 7 7 chr12 103341669 103341972 -40444483 - AluSx SINE Alu -9 303 1 2311 94 7 0 chr12 103341982 103342281 -40444174 - AluSq SINE Alu -12 301 1 301 253 81 0 chr12 103344334 103344421 -40442034 + MIR SINE MIR 91 184 -78 5189 62 8 0 chr12 103344466 103345077 -40441378 - L1PA6 LINE L1 -11 6143 5528 448 286 205 27 chr12 103345357 103345616 -40440839 + L3 LINE CR1 1262 1566 -11 225 0 0 0 chr12 103345644 103345669 -40440786 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 818 296 68 3 chr12 103346387 103346708 -40439747 + MLT1J LTR MaLR 3 344 -167 788 245 62 0 chr12 103346708 103346967 -40439488 + L2 LINE L2 2776 3055 -258 32458 109 16 57 chr12 103346979 103352559 -40433896 + L1PA7 LINE L1 12 5271 -883 300 27 0 0 chr12 103352559 103352596 -40433859 + (CA)n Simple_repeat Simple_repeat 2 38 0 32458 109 16 57 chr12 103352596 103353445 -40433010 + L1PA7 LINE L1 5271 6154 0 1020 88 15 0 chr12 103353680 103353816 -40432639 - AluSg/x SINE Alu -8 304 167 596 165 9 0 chr12 103354876 103354991 -40431464 + GA-rich Low_complexity Low_complexity 2 117 0 258 193 0 0 chr12 103356124 103356181 -40430274 + A-rich Low_complexity Low_complexity 1 57 0 294 185 0 0 chr12 103356385 103356439 -40430016 + C-rich Low_complexity Low_complexity 1 54 0 232 193 15 76 chr12 103356446 103356643 -40429812 + A-rich Low_complexity Low_complexity 1 185 0 245 263 20 10 chr12 103357127 103357226 -40429229 + (CGGGG)n Simple_repeat Simple_repeat 4 103 0 29 0 0 0 chr12 103357646 103357675 -40428780 + GC_rich Low_complexity Low_complexity 1 29 0 405 296 113 80 chr12 103357768 103358380 -40428075 - L1M2 LINE L1 -5612 1237 606 2143 111 0 0 chr12 103360002 103360281 -40426174 - AluSx SINE Alu -33 279 1 234 0 0 0 chr12 103360607 103360633 -40425822 + (T)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr12 103360876 103360903 -40425552 + AT_rich Low_complexity Low_complexity 1 27 0 693 95 16 24 chr12 103361235 103361361 -40425094 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 592 283 6 6 chr12 103361468 103361627 -40424828 + MIR SINE MIR 46 204 -58 2055 125 20 10 chr12 103361628 103361931 -40424524 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr12 103362206 103362227 -40424228 + (T)n Simple_repeat Simple_repeat 1 21 0 722 261 61 0 chr12 103362380 103362545 -40423910 - MER96 DNA MER1_type 0 175 1 200 206 0 0 chr12 103363363 103363397 -40423058 - L2 LINE L2 -14 3258 3225 186 222 0 0 chr12 103363367 103363403 -40423052 - MIR SINE MIR -12 250 215 * 3224 122 27 101 chr12 103363482 103364145 -40422310 - LTR18B LTR ERVL 0 614 1 768 294 124 42 chr12 103364239 103364739 -40421716 + MLT1K LTR MaLR 2 542 -46 897 265 59 43 chr12 103366323 103366696 -40419759 + L1MC4a LINE L1 5520 5898 -1910 3053 247 98 52 chr12 103366802 103368422 -40418033 + L2 LINE L2 1594 3303 -10 1753 178 0 38 chr12 103368423 103368737 -40417718 + AluJb SINE Alu 1 302 -10 207 0 0 0 chr12 103368751 103368774 -40417681 + (TA)n Simple_repeat Simple_repeat 2 24 0 269 229 57 143 chr12 103368807 103369017 -40417438 - MIR SINE MIR -5 257 66 1972 110 10 23 chr12 103369147 103369455 -40417000 - AluSg SINE Alu -6 304 1 1394 290 83 22 chr12 103370160 103370566 -40415889 + LTR16C LTR ERVL 5 444 -47 3406 109 51 29 chr12 103370566 103371115 -40415340 + MER34B LTR ERV1 5 565 0 1394 290 83 22 chr12 103371115 103371167 -40415288 + LTR16C LTR ERVL 444 491 0 1069 256 140 28 chr12 103371211 103371640 -40414815 - L2 LINE L2 0 3313 2837 200 260 0 0 chr12 103371813 103371863 -40414592 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 435 312 38 42 chr12 103371929 103372112 -40414343 - MIR SINE MIR -58 150 2 706 176 209 55 chr12 103372228 103372410 -40414045 + MER63A DNA MER1_type 1 210 0 405 102 0 0 chr12 103372585 103372644 -40413811 + (CA)n Simple_repeat Simple_repeat 1 59 0 188 263 141 10 chr12 103374373 103374472 -40411983 - L3b LINE CR1 -185 1398 1287 213 290 83 78 chr12 103374595 103374788 -40411667 + L2 LINE L2 2812 3005 -267 353 100 0 17 chr12 103374884 103374944 -40411511 + (TTGG)n Simple_repeat Simple_repeat 2 60 0 2074 162 138 85 chr12 103375260 103375301 -40411154 - MLT2B1 LTR ERVL 0 520 483 330 26 0 0 chr12 103375301 103375340 -40411115 + (TG)n Simple_repeat Simple_repeat 2 40 0 2074 162 138 85 chr12 103375340 103375792 -40410663 - MLT2B1 LTR ERVL -37 483 1 587 244 25 15 chr12 103375823 103375987 -40410468 - MIR SINE MIR -62 146 8 264 211 0 0 chr12 103377088 103377140 -40409315 + L2 LINE L2 3262 3313 0 577 279 100 35 chr12 103377961 103378090 -40408365 - MIR SINE MIR -1 261 142 2401 128 19 30 chr12 103378090 103378458 -40407997 + THE1B LTR MaLR 1 364 0 577 279 100 35 chr12 103378458 103378557 -40407898 - MIR SINE MIR -120 142 18 231 295 288 0 chr12 103378649 103378788 -40407667 + MIR SINE MIR 47 225 -37 270 216 0 0 chr12 103378986 103379037 -40407418 - L1MC4 LINE L1 -1337 6705 6655 1682 206 3 10 chr12 103379543 103379844 -40406611 - AluJo SINE Alu -13 299 1 294 328 86 35 chr12 103380673 103380847 -40405608 - L2 LINE L2 -15 3257 3075 265 330 64 0 chr12 103381716 103381810 -40404645 - L2 LINE L2 -191 3081 2982 1046 291 80 66 chr12 103382108 103382867 -40403588 + L1MC/D LINE L1 3693 4440 -2009 2038 129 7 3 chr12 103382867 103383162 -40403293 + AluSx SINE Alu 1 296 -16 1046 291 80 66 chr12 103383162 103384382 -40402073 + L1MC/D LINE L1 4440 5700 -749 1939 225 87 104 chr12 103384384 103384799 -40401656 + Zaphod DNA AcHobo 1 422 -3609 2271 106 0 0 chr12 103384799 103385083 -40401372 - AluSx SINE Alu -28 284 1 1939 225 87 104 chr12 103385083 103385480 -40400975 + Zaphod DNA AcHobo 422 824 -3207 2368 102 0 0 chr12 103385480 103385783 -40400672 - AluSx SINE Alu -9 303 1 1939 225 87 104 chr12 103385783 103385936 -40400519 + Zaphod DNA AcHobo 824 952 -3079 1763 175 0 48 chr12 103385936 103386250 -40400205 - AluJb SINE Alu -6 306 8 1939 225 87 104 chr12 103386250 103386269 -40400186 + Zaphod DNA AcHobo 952 970 -3061 1462 215 72 26 chr12 103386281 103386699 -40399756 + Zaphod DNA AcHobo 3595 4031 0 1886 196 11 32 chr12 103386786 103387159 -40399296 - MLT1A1 LTR MaLR 0 365 1 200 239 42 42 chr12 103387273 103387344 -40399111 + L2 LINE L2 3237 3307 -6 180 0 0 0 chr12 103387345 103387365 -40399090 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 2130 129 0 13 chr12 103387383 103387694 -40398761 + AluSx SINE Alu 6 312 0 207 217 0 0 chr12 103389593 103389653 -40396802 + (TG)n Simple_repeat Simple_repeat 1 60 0 246 317 114 35 chr12 103391215 103391417 -40395038 - L2 LINE L2 -638 2676 2459 1347 204 108 29 chr12 103393353 103393697 -40392758 + MLT1A2 LTR MaLR 4 374 0 189 0 0 0 chr12 103393860 103393881 -40392574 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr12 103393909 103393937 -40392518 + AT_rich Low_complexity Low_complexity 1 28 0 1549 167 85 40 chr12 103394310 103394663 -40391792 - MLT1A2 LTR MaLR 0 374 6 231 267 58 35 chr12 103395177 103395263 -40391192 + L2 LINE L2 3208 3295 -18 185 231 62 62 chr12 103395916 103395981 -40390474 + L3 LINE CR1 684 748 -829 923 219 84 138 chr12 103396367 103397416 -40389039 + L1MC5 LINE L1 6834 7825 -136 797 242 130 45 chr12 103398059 103398568 -40387887 + L1ME LINE L1 5267 5818 -303 22 0 0 0 chr12 103399441 103399463 -40386992 + AT_rich Low_complexity Low_complexity 1 22 0 245 306 67 100 chr12 103399583 103399763 -40386692 - L2 LINE L2 0 3272 3099 498 199 22 44 chr12 103399914 103400050 -40386405 + MER103 DNA DNA 32 164 -2 360 276 11 23 chr12 103400172 103400259 -40386196 + L2 LINE L2 3169 3254 -18 355 291 47 16 chr12 103400336 103400463 -40385992 - MIR SINE MIR -62 146 16 364 267 217 22 chr12 103401193 103401373 -40385082 + MIR SINE MIR 32 246 -16 2927 6 0 0 chr12 103401486 103401802 -40384653 - AluYb8 SINE Alu -2 316 1 1908 92 11 4 chr12 103402988 103403249 -40383206 - AluSq SINE Alu -11 302 40 2146 107 10 0 chr12 103403455 103403745 -40382710 - AluSp SINE Alu -20 293 1 183 296 0 0 chr12 103403816 103403870 -40382585 - L3 LINE CR1 -7 1570 1517 2216 89 0 0 chr12 103404238 103404518 -40381937 + AluY SINE Alu 20 299 -12 489 313 55 0 chr12 103406012 103406175 -40380280 - MIR3 SINE MIR 0 208 37 195 312 98 73 chr12 103406721 103406926 -40379529 + L2 LINE L2 2828 3037 -276 1015 285 91 39 chr12 103406950 103407434 -40379021 + MLT1H LTR MaLR 26 534 -15 243 316 11 53 chr12 103407530 103407625 -40378830 + L2 LINE L2 3178 3268 -4 238 135 0 0 chr12 103408299 103408336 -40378119 + L1MB3 LINE L1 6086 6122 -61 206 304 43 0 chr12 103409061 103409130 -40377325 - MER5A DNA MER1_type -117 72 1 288 357 47 0 chr12 103409201 103409330 -40377125 + MIR SINE MIR 128 262 0 205 283 31 136 chr12 103409436 103409789 -40376666 + L2 LINE L2 2943 3258 -14 831 245 32 36 chr12 103409874 103410123 -40376332 + MIR SINE MIR 15 262 0 488 231 14 61 chr12 103410131 103410278 -40376177 + MIR SINE MIR 12 151 -111 2224 118 0 0 chr12 103412076 103412373 -40374082 + AluSx SINE Alu 1 297 -15 342 254 373 8 chr12 103412638 103412764 -40373691 + MER5A DNA MER1_type 10 181 -8 534 31 0 0 chr12 103413283 103413347 -40373108 + (TG)n Simple_repeat Simple_repeat 1 64 0 23 54 0 0 chr12 103415566 103415603 -40370852 + AT_rich Low_complexity Low_complexity 1 37 0 246 309 24 0 chr12 103415628 103415712 -40370743 - L2 LINE L2 -81 3232 3147 402 21 0 0 chr12 103416214 103416261 -40370194 + (CA)n Simple_repeat Simple_repeat 2 48 0 231 125 0 0 chr12 103416261 103416301 -40370154 + (GA)n Simple_repeat Simple_repeat 1 40 0 335 256 39 0 chr12 103416601 103416679 -40369776 + L2 LINE L2 3146 3226 -46 648 276 109 100 chr12 103416815 103416972 -40369483 - MLT1L LTR MaLR -42 573 419 2380 104 0 0 chr12 103416972 103417281 -40369174 - AluY SINE Alu -2 309 1 648 276 109 100 chr12 103417281 103417691 -40368764 - MLT1L LTR MaLR -196 419 1 13442 173 37 41 chr12 103417792 103419141 -40367314 + L1MA4 LINE L1 1 1354 -5128 2440 80 0 0 chr12 103419141 103419440 -40367015 - AluY SINE Alu -12 299 1 13442 173 37 41 chr12 103419440 103421956 -40364499 + L1MA4 LINE L1 1354 3879 -2603 507 100 44 22 chr12 103421956 103422043 -40364412 + L1PA11 LINE L1 6082 6173 -1 308 34 51 0 chr12 103422044 103422103 -40364352 + Charlie5 DNA MER1_type 2477 2538 -74 13442 173 37 41 chr12 103422103 103424221 -40362234 + L1MA4 LINE L1 3879 5970 -512 2278 120 0 0 chr12 103424221 103424530 -40361925 + AluSx SINE Alu 1 309 -3 13442 173 37 41 chr12 103424530 103425035 -40361420 + L1MA4 LINE L1 5970 6476 -6 2257 110 3 0 chr12 103425316 103425615 -40360840 - AluSc SINE Alu -9 300 1 207 305 37 0 chr12 103426348 103426430 -40360025 - MIR3 SINE MIR -7 201 117 679 306 76 21 chr12 103426436 103426857 -40359598 + HAL1 LINE L1 3 446 -2061 398 308 210 0 chr12 103426969 103427164 -40359291 - MIR SINE MIR -13 249 14 1614 236 104 40 chr12 103427296 103427796 -40358659 + HAL1 LINE L1 757 1326 -1181 1407 186 128 7 chr12 103427796 103427894 -40358561 + AluJb SINE Alu 1 86 -226 201 94 0 0 chr12 103427894 103427926 -40358529 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1407 186 128 7 chr12 103427926 103428101 -40358354 + AluJb SINE Alu 86 307 -5 1614 236 104 40 chr12 103428101 103428377 -40358078 + HAL1 LINE L1 1326 1583 -924 275 0 29 0 chr12 103428655 103428690 -40357765 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2063 102 7 4 chr12 103428693 103428967 -40357488 - AluSx SINE Alu -37 275 1 2520 232 31 7 chr12 103429027 103429638 -40356817 - MLT1E2 LTR MaLR 0 626 1 326 235 47 0 chr12 103429758 103429843 -40356612 - L2 LINE L2 -8 3305 3217 7019 2 0 0 chr12 103429858 103430671 -40355784 + L1HS LINE L1 5343 6155 0 1749 70 0 0 chr12 103430988 103431202 -40355253 + AluY SINE Alu 1 214 -97 223 371 46 40 chr12 103431351 103431502 -40354953 - MIR SINE MIR -85 177 26 389 296 218 47 chr12 103433101 103433130 -40353325 - L2 LINE L2 0 3313 3290 1734 195 14 11 chr12 103433130 103433489 -40352966 + MLT1A1 LTR MaLR 5 364 -1 389 296 218 47 chr12 103433489 103433776 -40352679 - L2 LINE L2 -23 3290 2943 1980 128 31 55 chr12 103434266 103434650 -40351805 - THE1C LTR MaLR 0 375 1 997 269 96 47 chr12 103435399 103435827 -40350628 - MLT1J2 LTR MaLR 0 450 2 431 262 16 16 chr12 103437126 103437248 -40349207 - MIR SINE MIR -116 146 25 266 318 27 55 chr12 103438408 103438628 -40347827 + L1MEd LINE L1 511 724 -5395 1932 152 11 14 chr12 103438853 103439201 -40347254 + MLT1A1 LTR MaLR 19 365 0 480 306 87 24 chr12 103439207 103439810 -40346645 + L1MEd LINE L1 932 1465 -4666 840 292 46 33 chr12 103441178 103441568 -40344887 - MLT1I LTR MaLR 0 409 15 517 245 46 0 chr12 103442737 103442888 -40343567 + MER103 DNA DNA 7 164 -2 319 219 61 117 chr12 103443642 103443838 -40342617 + L2 LINE L2 3030 3214 -99 1169 242 69 38 chr12 103444213 103444773 -40341682 + L2 LINE L2 2626 3193 -120 228 67 0 0 chr12 103444774 103444804 -40341651 + (TTA)n Simple_repeat Simple_repeat 2 31 0 865 164 0 0 chr12 103444806 103444940 -40341515 - FRAM SINE Alu -30 146 13 465 277 0 18 chr12 103444977 103445089 -40341366 + L2 LINE L2 3203 3312 -1 400 308 126 7 chr12 103445090 103445233 -40341222 + MIR SINE MIR 13 172 -90 329 274 54 43 chr12 103446148 103446334 -40340121 - MLT1J LTR MaLR -299 212 25 2264 101 3 16 chr12 103446637 103446945 -40339510 + AluSx SINE Alu 1 304 -8 244 284 95 0 chr12 103450103 103450177 -40336278 - L2 LINE L2 -2 3311 3231 434 229 83 0 chr12 103450203 103450312 -40336143 + MER94 DNA DNA 4 121 -13 439 296 106 25 chr12 103450572 103450771 -40335684 - MIR SINE MIR -11 251 37 214 282 120 60 chr12 103452588 103452705 -40333750 + L2 LINE L2 3143 3266 -6 426 345 105 42 chr12 103452770 103453152 -40333303 - L2 LINE L2 -3 3269 2864 409 248 22 7 chr12 103453760 103453897 -40332558 + L1ME2 LINE L1 5546 5684 -437 429 245 11 0 chr12 103453953 103454047 -40332408 + MER63A DNA MER1_type 90 184 -26 324 0 0 0 chr12 103454097 103454133 -40332322 + (CA)n Simple_repeat Simple_repeat 1 36 0 233 226 32 0 chr12 103454133 103454195 -40332260 - MLT1J LTR MaLR -324 187 124 292 157 0 0 chr12 103456536 103456587 -40329868 + MLT2D LTR ERVL 5 55 -409 * 2167 131 81 5 chr12 103456581 103456964 -40329491 + MSTB LTR MaLR 15 426 0 1324 204 7 7 chr12 103456964 103457244 -40329211 + MLT2D LTR ERVL 87 366 -48 444 82 0 0 chr12 103457275 103457336 -40329119 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 6241 140 43 15 chr12 103457336 103458515 -40327940 - Tigger3b DNA MER2_type -3 1228 17 435 38 0 0 chr12 103458526 103458579 -40327876 + (TG)n Simple_repeat Simple_repeat 2 54 0 428 262 153 57 chr12 103460260 103460489 -40325966 + MIR SINE MIR 11 261 -1 1072 188 95 61 chr12 103460817 103461057 -40325398 + L1ME2 LINE L1 5735 5996 -168 2115 137 23 0 chr12 103461057 103461357 -40325098 + AluSg SINE Alu 1 307 -3 1072 188 95 61 chr12 103461357 103461526 -40324929 + L1ME2 LINE L1 5996 6158 -6 227 224 47 28 chr12 103462146 103462253 -40324202 + L1MC/D LINE L1 2214 2322 -3824 35269 87 12 9 chr12 103462266 103466376 -40320079 + L1PA6 LINE L1 8 4145 -2009 189 0 0 0 chr12 103466376 103466397 -40320058 + (CCCTAA)n Simple_repeat Simple_repeat 5 25 0 35269 87 12 9 chr12 103466397 103468410 -40318045 + L1PA6 LINE L1 4145 6149 -5 522 294 79 29 chr12 103468472 103469095 -40317360 + L1MC/D LINE L1 2402 3055 -3091 2007 134 3 0 chr12 103470662 103470945 -40315510 + AluSx SINE Alu 1 284 -28 1969 296 62 26 chr12 103472060 103473652 -40312803 + L1MC/D LINE L1 3073 4722 -1424 21 0 0 0 chr12 103473767 103473788 -40312667 + AT_rich Low_complexity Low_complexity 1 21 0 327 323 70 26 chr12 103473838 103474067 -40312388 + L1MC/D LINE L1 5457 5695 -475 3768 125 44 33 chr12 103474128 103474830 -40311625 - L1MA4A LINE L1 -3 6300 5591 4654 116 16 11 chr12 103474830 103475329 -40311126 - L1PA16 LINE L1 -9 6157 5645 1951 128 80 14 chr12 103475329 103475681 -40310774 + THE1C LTR MaLR 1 375 0 4654 116 16 11 chr12 103475681 103475924 -40310531 - L1PA16 LINE L1 -521 5645 5405 1315 88 10 15 chr12 103475924 103476128 -40310327 - L1MA4A LINE L1 -698 5605 5403 * 3831 214 53 7 chr12 103476124 103476996 -40309459 - L1M2 LINE L1 -5339 1510 599 2499 169 24 2 chr12 103477051 103477513 -40308942 - L1M2 LINE L1 -6376 473 2 740 175 54 12 chr12 103477698 103477864 -40308591 - LTR8 LTR ERV1 -516 175 3 1124 188 74 81 chr12 103477869 103478263 -40308192 - MER39 LTR ERV1 -57 650 260 400 259 123 12 chr12 103478459 103478579 -40307876 + MER5A DNA MER1_type 1 147 -42 324 0 0 0 chr12 103478579 103478615 -40307840 + (TG)n Simple_repeat Simple_repeat 2 37 0 400 259 123 12 chr12 103478615 103478664 -40307791 + MER5A DNA MER1_type 147 189 0 236 135 0 0 chr12 103478834 103478871 -40307584 + AluSx SINE Alu 1 37 -265 1246 106 0 0 chr12 103478871 103479032 -40307423 - AluSp SINE Alu -13 300 140 1919 84 0 0 chr12 103479334 103479573 -40306882 + AluSq SINE Alu 55 293 -20 1870 105 23 4 chr12 103479767 103480024 -40306431 + AluSx SINE Alu 40 301 -11 609 329 84 0 chr12 103480028 103480241 -40306214 - MIR SINE MIR -18 244 14 230 337 21 11 chr12 103480389 103480484 -40305971 - MIR SINE MIR -59 149 54 3880 181 44 21 chr12 103481246 103481289 -40305166 - MER21B LTR ERV1 -20 843 802 1567 153 153 26 chr12 103481289 103481669 -40304786 - MSTA LTR MaLR 0 428 1 3880 181 44 21 chr12 103481669 103482435 -40304020 - MER21B LTR ERV1 -61 802 15 2341 105 0 3 chr12 103482438 103482744 -40303711 - AluSc SINE Alu -4 305 1 1989 151 16 3 chr12 103483656 103483961 -40302494 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr12 103483977 103483998 -40302457 + AT_rich Low_complexity Low_complexity 1 21 0 1361 201 57 57 chr12 103484305 103484742 -40301713 + LTR56 LTR ERV1 9 445 0 2118 103 17 13 chr12 103484844 103485144 -40301311 + AluSg SINE Alu 1 301 -9 268 331 84 33 chr12 103485809 103486235 -40300220 - L1ME LINE L1 -296 5825 5378 243 341 71 13 chr12 103486847 103486948 -40299507 + MIR SINE MIR 43 137 -125 3182 130 54 6 chr12 103486948 103487487 -40298968 - MER34B LTR ERV1 0 565 1 243 341 71 13 chr12 103487487 103487591 -40298864 + MIR SINE MIR 137 262 0 465 314 94 8 chr12 103488087 103488332 -40298123 + MLT1J LTR MaLR 241 506 -5 450 191 113 21 chr12 103488374 103488515 -40297940 - MIR3 SINE MIR -17 191 38 232 271 0 33 chr12 103489349 103489471 -40296984 - L1ME4a LINE L1 -45 6076 5959 1987 106 15 4 chr12 103491233 103491541 -40294914 - AluSx SINE Alu 0 316 6 2087 106 18 0 chr12 103491571 103491854 -40294601 - AluSc SINE Alu -21 288 1 387 254 42 0 chr12 103492341 103492459 -40293996 - L1ME4a LINE L1 -1984 5824 5702 229 288 36 14 chr12 103492502 103492641 -40293814 + L1M4 LINE L1 4561 4702 -1444 271 275 7 49 chr12 103493033 103493175 -40293280 - L1ME LINE L1 -349 5772 5637 589 269 82 24 chr12 103493431 103493658 -40292797 - MIR SINE MIR 0 262 20 298 191 52 38 chr12 103494054 103494133 -40292322 + MER67D LTR ERV1 311 438 -76 390 246 11 2 chr12 103494343 103494466 -40291989 + MLT1K LTR MaLR 455 577 -11 923 225 36 55 chr12 103494537 103494790 -40291665 - MIR SINE MIR -8 254 7 512 152 0 48 chr12 103495272 103495377 -40291078 - FLAM_C SINE Alu -1 142 43 896 167 0 0 chr12 103495293 103495419 -40291036 - AluJo/FLAM SINE Alu -176 126 1 2728 177 12 22 chr12 103496241 103496622 -40289833 + MLT2B1 LTR ERVL 1 384 -136 2922 73 3 0 chr12 103496622 103496976 -40289479 - THE1A LTR MaLR 0 355 1 2728 177 12 22 chr12 103496976 103497045 -40289410 + MLT2B1 LTR ERVL 384 448 -72 3999 107 27 9 chr12 103497045 103497604 -40288851 + MER61E LTR ERV1 1 569 0 2728 177 12 22 chr12 103497604 103497648 -40288807 + MLT2B1 LTR ERVL 448 491 -29 1244 102 0 6 chr12 103497650 103497826 -40288629 - MER41B LTR ERV1 -460 175 1 1495 90 28 5 chr12 103497826 103498037 -40288418 - MER41B-int LTR ERV1 -2 5944 5729 536 111 33 22 chr12 103498033 103498123 -40288332 - MER41B-int LTR ERV1 -5855 91 1 * 1057 117 7 0 chr12 103498123 103498277 -40288178 - MER41B LTR ERV1 0 635 481 2307 92 3 0 chr12 103498491 103498784 -40287671 + AluSx SINE Alu 3 296 -16 22 0 0 0 chr12 103499044 103499066 -40287389 + AT_rich Low_complexity Low_complexity 1 22 0 402 21 0 0 chr12 103499221 103499268 -40287187 + (TTATA)n Simple_repeat Simple_repeat 3 49 0 484 148 0 23 chr12 103499432 103499520 -40286935 - L1PA16 LINE L1 -1 6165 6080 255 282 12 35 chr12 103501102 103501187 -40285268 - MIR3 SINE MIR -39 169 87 549 247 112 72 chr12 103501441 103501692 -40284763 - MIR SINE MIR 0 262 2 200 344 0 22 chr12 103501721 103501811 -40284644 - L2 LINE L2 0 3313 3226 2104 26 0 0 chr12 103502348 103502582 -40283873 + AluY SINE Alu 78 311 0 207 0 0 0 chr12 103503714 103503737 -40282718 + (A)n Simple_repeat Simple_repeat 1 23 0 1090 193 47 14 chr12 103503914 103504127 -40282328 - MER58A DNA MER1_type -4 220 1 332 292 18 83 chr12 103504638 103504806 -40281649 + MIR SINE MIR 21 177 -85 2308 103 3 3 chr12 103505670 103505982 -40280473 + AluSq SINE Alu 1 312 -1 553 138 64 0 chr12 103505993 103506087 -40280368 + MLT1A2 LTR MaLR 273 372 -2 229 161 143 0 chr12 103506095 103506151 -40280304 - L1ME LINE L1 -654 5512 5449 239 243 43 14 chr12 103506228 103506298 -40280157 - MIR SINE MIR -119 143 72 22 0 0 0 chr12 103506725 103506747 -40279708 + AT_rich Low_complexity Low_complexity 1 22 0 363 282 8 8 chr12 103507002 103507119 -40279336 + MIR SINE MIR 91 207 -55 770 297 32 20 chr12 103507204 103507453 -40279002 + MIR SINE MIR 5 256 -6 406 270 68 34 chr12 103508003 103508151 -40278304 + MIR SINE MIR 14 166 -96 1074 120 109 5 chr12 103508151 103508335 -40278120 + L1MA5A LINE L1 6092 6294 -3 24 0 0 0 chr12 103508335 103508359 -40278096 + AT_rich Low_complexity Low_complexity 1 24 0 206 284 14 14 chr12 103508362 103508436 -40278019 + MIR SINE MIR 160 233 -29 772 256 109 0 chr12 103509066 103509277 -40277178 + MIR SINE MIR 21 254 -8 344 363 0 0 chr12 103509286 103509388 -40277067 - L2 LINE L2 -21 3251 3150 937 230 47 0 chr12 103509696 103509909 -40276546 + MIR SINE MIR 40 262 0 655 75 0 0 chr12 103509951 103510031 -40276424 - MADE1 DNA Mariner 0 80 1 226 267 267 29 chr12 103510041 103510146 -40276309 - MIR SINE MIR -62 146 17 1044 157 11 11 chr12 103510643 103510834 -40275621 - L1MB3 LINE L1 0 6183 5993 210 143 0 0 chr12 103511978 103512013 -40274442 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 245 0 0 chr12 103512525 103512574 -40273881 + GA-rich Low_complexity Low_complexity 2 50 0 251 266 31 16 chr12 103512635 103512763 -40273692 + (TG)n Simple_repeat Simple_repeat 1 130 0 221 188 31 10 chr12 103512787 103512883 -40273572 + (TG)n Simple_repeat Simple_repeat 1 98 0 301 269 29 34 chr12 103512993 103513053 -40273402 + (TATG)n Simple_repeat Simple_repeat 4 63 -114 275 65 22 0 chr12 103513053 103513099 -40273356 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 269 29 34 chr12 103513099 103513213 -40273242 + (TATG)n Simple_repeat Simple_repeat 63 177 0 2391 145 111 3 chr12 103514987 103515373 -40271082 - MSTA LTR MaLR 0 428 1 199 381 12 0 chr12 103517122 103517206 -40269249 + L2 LINE L2 3107 3191 -81 * 489 314 118 0 chr12 103517195 103517424 -40269031 - MIR SINE MIR -5 257 2 235 297 109 25 chr12 103517726 103517994 -40268461 + L1ME1 LINE L1 5677 5962 -204 2364 103 3 0 chr12 103518041 103518352 -40268103 + AluSq SINE Alu 1 312 -1 1271 231 0 0 chr12 103518360 103518603 -40267852 + MIR SINE MIR 20 262 0 2329 64 6 51 chr12 103518787 103519099 -40267356 - AluSp SINE Alu -15 298 1 257 271 0 0 chr12 103519318 103519366 -40267089 - L2 LINE L2 -10 3262 3215 1109 262 138 20 chr12 103520359 103520809 -40265646 - MLT1J LTR MaLR -8 503 1 376 238 69 30 chr12 103521629 103521730 -40264725 - MIR SINE MIR -106 156 52 285 275 55 37 chr12 103521764 103521873 -40264582 - L2 LINE L2 -30 3242 3132 2718 176 21 25 chr12 103522825 103523349 -40263106 - MER89 LTR ERV1 0 559 38 657 246 47 39 chr12 103523397 103523604 -40262851 + MIR SINE MIR 35 251 -11 189 0 0 0 chr12 103523924 103523945 -40262510 + (A)n Simple_repeat Simple_repeat 1 21 0 319 274 24 0 chr12 103524016 103524100 -40262355 - MIR SINE MIR -81 181 96 2158 104 7 3 chr12 103525198 103525486 -40260969 + AluSx SINE Alu 1 289 -23 669 204 8 8 chr12 103525672 103525804 -40260651 + MLT1I LTR MaLR 9 140 -269 1061 214 42 19 chr12 103525861 103526076 -40260379 + MER58A DNA MER1_type 5 224 0 471 266 35 7 chr12 103526088 103526231 -40260224 + MLT1I LTR MaLR 256 402 -7 297 321 72 62 chr12 103527699 103527989 -40258466 + L3 LINE CR1 678 970 -607 229 250 18 0 chr12 103528033 103528089 -40258366 - L2 LINE L2 0 3272 3216 415 193 45 136 chr12 103528122 103528322 -40258133 + MER58C DNA MER1_type 35 215 0 789 263 81 77 chr12 103528444 103528874 -40257581 + L3b LINE CR1 1133 1564 -19 274 208 0 19 chr12 103528905 103528958 -40257497 + MIR SINE MIR 96 147 -61 227 270 48 42 chr12 103529214 103529403 -40257052 + L1MDa LINE L1 2452 2641 -3899 1997 244 105 24 chr12 103529809 103530741 -40255714 + L2 LINE L2 2297 3309 -4 277 316 22 63 chr12 103531112 103531173 -40255282 + MIR SINE MIR 17 79 -183 645 154 245 85 chr12 103531173 103531361 -40255094 - MER20 DNA MER1_type 0 219 2 277 316 22 63 chr12 103531361 103531505 -40254950 + MIR SINE MIR 79 213 -49 414 250 97 8 chr12 103532234 103532358 -40254097 - MIR SINE MIR -108 154 20 2391 101 0 0 chr12 103532657 103532965 -40253490 + AluSq SINE Alu 1 308 -5 1364 120 76 54 chr12 103533061 103533198 -40253257 + L1MA8 LINE L1 6004 6137 -154 9554 117 10 0 chr12 103533198 103535348 -40251107 + L1PA10 LINE L1 3992 6154 -14 2156 104 3 0 chr12 103535350 103535637 -40250818 - AluSg SINE Alu -22 288 1 1364 120 76 54 chr12 103535637 103535772 -40250683 + L1MA8 LINE L1 6137 6285 -6 25 31 0 0 chr12 103535772 103535804 -40250651 + AT_rich Low_complexity Low_complexity 1 32 0 226 114 0 0 chr12 103535861 103535896 -40250559 + L1P LINE L1 4961 4995 -1151 520 307 26 31 chr12 103535903 103536095 -40250360 + MIR SINE MIR 72 262 0 515 272 103 25 chr12 103536777 103537020 -40249435 + MIR SINE MIR 1 262 0 2029 180 11 75 chr12 103537153 103537604 -40248851 + LTR9 LTR ERV1 1 422 -190 549 188 34 91 chr12 103537733 103537909 -40248546 + LTR9 LTR ERV1 458 612 0 385 250 154 0 chr12 103537987 103538091 -40248364 - L2 LINE L2 -1 3271 3152 2417 93 0 0 chr12 103538274 103538586 -40247869 + AluSx SINE Alu 1 312 0 287 241 36 72 chr12 103541386 103541469 -40244986 - L2 LINE L2 -96 3176 3097 293 184 0 0 chr12 103541537 103541586 -40244869 - L2 LINE L2 -6 3266 3218 2080 150 3 0 chr12 103541698 103542005 -40244450 + AluJb SINE Alu 1 308 -4 2528 74 0 3 chr12 103542159 103542468 -40243987 + AluSg SINE Alu 1 308 -2 276 344 72 6 chr12 103542528 103542708 -40243747 + L2 LINE L2 2873 3064 -208 287 320 64 8 chr12 103542881 103543006 -40243449 + L2 LINE L2 3141 3272 0 210 319 210 0 chr12 103543721 103543840 -40242615 + L2 LINE L2 3170 3313 0 2312 119 0 0 chr12 103543918 103544230 -40242225 - AluSx SINE Alu 0 312 1 367 271 21 0 chr12 103545614 103545722 -40240733 - MIR3 SINE MIR 0 208 97 1072 296 117 39 chr12 103545810 103546637 -40239818 + HAL1 LINE L1 684 1575 -932 2194 114 3 3 chr12 103546638 103546937 -40239518 + AluSx SINE Alu 1 299 -13 1300 123 0 0 chr12 103546940 103547111 -40239344 + AluSg/x SINE Alu 128 298 -14 731 233 133 12 chr12 103547113 103547362 -40239093 + HAL1 LINE L1 1572 1850 -657 431 274 75 127 chr12 103547900 103548289 -40238166 + MLT1L LTR MaLR 179 542 -73 2299 108 0 6 chr12 103548289 103548603 -40237852 - AluSx SINE Alu 0 312 1 431 274 75 127 chr12 103548603 103548669 -40237786 + MLT1L LTR MaLR 542 610 -5 336 252 27 9 chr12 103548795 103548906 -40237549 + L1MC/D LINE L1 5364 5476 -2332 253 254 0 0 chr12 103549445 103549478 -40236977 + (AATTG)n Simple_repeat Simple_repeat 2 34 -38 2253 86 3 7 chr12 103549478 103549770 -40236685 + AluSx SINE Alu 2 292 -20 253 254 0 0 chr12 103549770 103549807 -40236648 + (AATTG)n Simple_repeat Simple_repeat 33 72 0 2376 101 0 0 chr12 103550075 103550383 -40236072 + AluSx SINE Alu 1 308 -4 246 105 0 0 chr12 103550631 103550669 -40235786 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 311 258 62 0 chr12 103551016 103551113 -40235342 - MIR SINE MIR -68 140 38 222 37 0 0 chr12 103551746 103551773 -40234682 + (CA)n Simple_repeat Simple_repeat 2 28 0 205 282 159 29 chr12 103551832 103552002 -40234453 + L2 LINE L2 2992 3183 -89 1146 144 0 0 chr12 103552414 103552581 -40233874 + AluSg/x SINE Alu 133 299 -11 503 243 83 0 chr12 103552784 103552928 -40233527 - MIR SINE MIR -105 157 2 983 214 0 0 chr12 103553111 103553284 -40233171 - MER45A DNA AcHobo 0 178 6 180 152 0 0 chr12 103553469 103553502 -40232953 + A-rich Low_complexity Low_complexity 1 33 0 340 248 17 0 chr12 103553674 103553791 -40232664 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 248 271 58 103 chr12 103554892 103555047 -40231408 + MIR SINE MIR 59 206 -56 196 328 75 0 chr12 103555152 103555219 -40231236 - MIR3 SINE MIR -30 178 107 505 297 27 0 chr12 103555349 103555497 -40230958 - MIR SINE MIR -109 153 2 180 0 0 0 chr12 103555529 103555549 -40230906 + (TC)n Simple_repeat Simple_repeat 2 21 0 581 298 31 5 chr12 103556684 103556875 -40229580 + MER117 DNA MER1_type 1 196 -1 404 301 8 16 chr12 103557599 103557722 -40228733 + L2 LINE L2 3151 3272 0 588 276 35 101 chr12 103557915 103558321 -40228134 + L2 LINE L2 2931 3309 -4 251 213 12 50 chr12 103558378 103558458 -40227997 - LTR50 LTR ERVL -2 793 717 2579 71 0 0 chr12 103558474 103558782 -40227673 - AluY SINE Alu -3 308 1 1835 167 0 3 chr12 103559354 103559641 -40226814 + AluJb SINE Alu 6 291 -21 203 275 11 66 chr12 103559950 103560041 -40226414 + L2 LINE L2 3137 3222 -50 336 344 61 8 chr12 103560185 103560316 -40226139 - L2 LINE L2 -2 3270 3133 1768 158 53 0 chr12 103560806 103561090 -40225365 + AluSx SINE Alu 1 299 -13 855 142 0 15 chr12 103561099 103561233 -40225222 + FLAM_C SINE Alu 1 132 -1 1192 181 104 26 chr12 103561946 103562316 -40224139 + MSTC LTR MaLR 1 428 0 234 354 20 0 chr12 103562614 103562713 -40223742 + MIR SINE MIR 53 153 -109 318 314 88 13 chr12 103562897 103563136 -40223319 + L2 LINE L2 3055 3311 -2 1972 168 3 0 chr12 103563508 103563818 -40222637 + AluJb SINE Alu 1 311 -1 2723 45 0 0 chr12 103565834 103566162 -40220293 - AluY SINE Alu 0 328 1 1078 179 20 5 chr12 103566639 103566835 -40219620 - LTR52 LTR ERVL -4 417 219 356 245 149 53 chr12 103567087 103567194 -40219261 + MIR SINE MIR 47 142 -120 525 228 60 24 chr12 103567194 103567361 -40219094 + MER104 DNA MER2_type 5 177 -3 356 245 149 53 chr12 103567361 103567441 -40219014 + MIR SINE MIR 142 252 -10 527 240 16 0 chr12 103567451 103567576 -40218879 + MIR SINE MIR 111 237 -25 474 281 78 10 chr12 103567693 103567885 -40218570 + MIR SINE MIR 58 262 0 1445 224 54 89 chr12 103568000 103568311 -40218144 - MER90 LTR ERV1 -2 612 326 1858 76 86 92 chr12 103568311 103568615 -40217840 + AluSg SINE Alu 1 302 -8 1445 224 54 89 chr12 103568615 103568843 -40217612 - MER90 LTR ERV1 -288 326 92 544 170 18 27 chr12 103568876 103568988 -40217467 + MER81 DNA DNA 1 111 -3 465 250 95 0 chr12 103569092 103569208 -40217247 + MIR SINE MIR 19 145 -117 941 133 7 0 chr12 103569542 103569685 -40216770 - U4 snRNA snRNA -1 144 1 314 295 21 0 chr12 103569821 103569916 -40216539 - MIR SINE MIR -92 170 74 286 191 55 45 chr12 103571164 103571226 -40215229 + AluSq SINE Alu 121 186 -117 666 246 130 52 chr12 103571226 103571556 -40214899 + LTR18A LTR ERVL 1 356 -1 286 191 55 45 chr12 103571556 103571603 -40214852 + AluSq SINE Alu 186 231 -72 5846 199 24 5 chr12 103571603 103572677 -40213778 + HERVL18 LTR ERVL 32 1126 -4921 306 203 16 0 chr12 103572712 103572776 -40213679 + LTR18B LTR ERVL 130 194 -420 16181 145 21 8 chr12 103572779 103575275 -40211180 + HERVL18 LTR ERVL 3520 6047 0 562 241 89 41 chr12 103575276 103575618 -40210837 + LTR18A LTR ERVL 1 614 0 1525 182 0 8 chr12 103575618 103575871 -40210584 + AluJo SINE Alu 41 291 -21 2226 123 0 0 chr12 103577147 103577447 -40209008 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 103577456 103577477 -40208978 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr12 103578122 103578166 -40208289 + AT_rich Low_complexity Low_complexity 1 44 0 268 325 121 54 chr12 103578319 103578707 -40207748 + MLT1K LTR MaLR 102 515 -73 3647 66 60 2 chr12 103578772 103579257 -40207198 - L1PA10 LINE L1 0 6168 5656 1776 183 0 3 chr12 103579494 103579789 -40206666 + AluJo SINE Alu 1 294 -18 2327 97 0 0 chr12 103579802 103580092 -40206363 + AluSg SINE Alu 1 290 -20 792 221 155 13 chr12 103580102 103580328 -40206127 - MIR SINE MIR 0 262 5 924 134 33 211 chr12 103580455 103580881 -40205574 - MER46B DNA MER2_type 0 236 2 2073 137 7 0 chr12 103580881 103581181 -40205274 + AluSq SINE Alu 1 302 -11 879 250 120 47 chr12 103581201 103581585 -40204870 + MLT1J1 LTR MaLR 32 443 -3 2269 114 0 0 chr12 103581745 103582043 -40204412 + AluY SINE Alu 2 299 -12 244 292 68 31 chr12 103582677 103582838 -40203617 - L1M4 LINE L1 -2662 3484 3318 2416 149 50 16 chr12 103582840 103583282 -40203173 - MSTB2 LTR MaLR 0 457 1 286 292 43 29 chr12 103583295 103583504 -40202951 - L1MC5 LINE L1 -60 7901 7690 2121 122 3 0 chr12 103583756 103584050 -40202405 + AluSx SINE Alu 1 295 -17 1786 180 3 7 chr12 103584340 103584629 -40201826 - AluJo SINE Alu -24 288 1 1993 134 3 11 chr12 103584638 103584944 -40201511 - AluSx SINE Alu 0 304 1 487 203 110 8 chr12 103584983 103585032 -40201423 + MER33 DNA MER1_type 1 36 -2549 2470 139 27 41 chr12 103585032 103585471 -40200984 + Tigger2a DNA MER2_type 1 433 -1 487 203 110 8 chr12 103585471 103585620 -40200835 + MER33 DNA MER1_type 36 230 -94 7690 169 18 10 chr12 103585620 103587515 -40198940 + L1M2 LINE L1 3665 5537 -743 526 260 0 18 chr12 103587521 103587754 -40198701 - MER90 LTR ERV1 -36 539 316 2270 126 20 48 chr12 103587758 103587907 -40198548 + Tigger2 DNA MER2_type 2334 2486 -232 2305 129 0 0 chr12 103587907 103588216 -40198239 - AluSx SINE Alu -3 309 1 2270 126 20 48 chr12 103588216 103588462 -40197993 + Tigger2 DNA MER2_type 2486 2718 0 410 266 9 137 chr12 103588570 103588803 -40197652 + L3 LINE CR1 1154 1356 -221 196 322 11 22 chr12 103588878 103588968 -40197487 + L3 LINE CR1 1483 1571 -6 1203 185 13 59 chr12 103588983 103589125 -40197330 + L1MD3 LINE L1 7705 7827 -168 2179 97 3 29 chr12 103589125 103589435 -40197020 + AluSx SINE Alu 1 302 -10 1203 185 13 59 chr12 103589435 103589595 -40196860 + L1MD3 LINE L1 7827 7993 -2 456 278 58 21 chr12 103589601 103589792 -40196663 + MIR SINE MIR 65 262 0 1741 202 3 0 chr12 103590122 103590429 -40196026 + AluJo SINE Alu 1 308 -4 2276 115 3 0 chr12 103590783 103591079 -40195376 - AluSx SINE Alu -15 297 1 213 39 0 0 chr12 103592202 103592228 -40194227 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2823 131 37 23 chr12 103592346 103592475 -40193980 + L1PB1 LINE L1 5650 5776 -375 423 0 0 0 chr12 103592475 103592522 -40193933 + (TA)n Simple_repeat Simple_repeat 2 48 0 2823 131 37 23 chr12 103592522 103592830 -40193625 + L1PB1 LINE L1 5776 6097 -54 2352 102 0 10 chr12 103592830 103593134 -40193321 + AluSq SINE Alu 1 301 -12 2823 131 37 23 chr12 103593134 103593182 -40193273 + L1PB1 LINE L1 6097 6143 -8 33 80 0 0 chr12 103593189 103593264 -40193191 + AT_rich Low_complexity Low_complexity 1 75 0 195 129 0 0 chr12 103593534 103593565 -40192890 + (A)n Simple_repeat Simple_repeat 1 31 0 2258 100 7 10 chr12 103593641 103593950 -40192505 + AluSq SINE Alu 1 308 -5 22 35 0 0 chr12 103594054 103594083 -40192372 + AT_rich Low_complexity Low_complexity 1 29 0 2206 102 6 40 chr12 103594452 103594775 -40191680 + AluSx SINE Alu 1 312 0 2018 214 52 77 chr12 103594950 103595197 -40191258 - MLT1E2 LTR MaLR -3 623 371 2327 122 0 0 chr12 103595197 103595509 -40190946 - AluSx SINE Alu 0 312 1 2018 214 52 77 chr12 103595509 103595900 -40190555 - MLT1E2 LTR MaLR -255 371 1 2101 151 3 0 chr12 103596709 103597021 -40189434 - AluSq SINE Alu 0 313 1 1888 183 110 53 chr12 103597023 103597134 -40189321 + MLT2B1 LTR ERVL 1 104 -416 2248 97 0 13 chr12 103597134 103597432 -40189023 + AluSx SINE Alu 1 294 -18 1888 183 110 53 chr12 103597432 103597812 -40188643 + MLT2B1 LTR ERVL 104 520 0 333 0 0 0 chr12 103598891 103598928 -40187527 + (CA)n Simple_repeat Simple_repeat 2 38 0 2395 112 0 0 chr12 103599376 103599680 -40186775 - AluSx SINE Alu -8 304 1 1780 108 31 52 chr12 103600438 103600744 -40185711 - AluJb SINE Alu 0 301 2 1100 110 43 18 chr12 103600756 103600920 -40185535 - AluSg/x SINE Alu -11 299 132 2483 63 0 7 chr12 103600920 103601222 -40185233 - AluY SINE Alu -11 300 1 694 242 21 36 chr12 103601329 103601523 -40184932 - LTR16A LTR ERVL -242 208 18 2331 121 0 0 chr12 103601846 103602153 -40184302 - AluSx SINE Alu -5 307 1 298 255 28 19 chr12 103602230 103602336 -40184119 - L1MC5 LINE L1 -37 7924 7818 256 282 126 60 chr12 103602468 103602715 -40183740 + L1M4 LINE L1 4180 4409 -1737 1719 172 53 0 chr12 103602715 103603000 -40183455 + AluJb SINE Alu 2 301 -11 256 282 126 60 chr12 103603000 103603354 -40183101 + L1M4 LINE L1 4409 4738 -1408 276 30 0 0 chr12 103603354 103603387 -40183068 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 282 126 60 chr12 103603387 103603508 -40182947 + L1M4 LINE L1 4738 4850 -1296 2074 117 23 16 chr12 103603508 103603816 -40182639 + AluSx SINE Alu 1 310 -2 256 282 126 60 chr12 103603816 103603853 -40182602 + L1M4 LINE L1 4850 4991 -1155 1639 189 3 17 chr12 103603856 103604157 -40182298 - AluJb SINE Alu -15 297 1 416 173 0 0 chr12 103604171 103604246 -40182209 - MER116 DNA Mariner -5 75 1 2177 112 3 7 chr12 103604306 103604611 -40181844 + AluSx SINE Alu 1 304 -8 2127 108 7 3 chr12 103605478 103605783 -40180672 - AluSq SINE Alu -7 306 1 231 36 0 0 chr12 103608653 103608681 -40177774 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2073 98 0 54 chr12 103608912 103609039 -40177416 + AluSq SINE Alu 1 133 -180 7752 28 5 0 chr12 103609039 103610325 -40176130 + L1PA3 LINE L1 4862 6155 0 2073 98 0 54 chr12 103610325 103610512 -40175943 + AluSq SINE Alu 133 298 -15 395 159 0 29 chr12 103610768 103610837 -40175618 - LTR40a LTR ERVL -2 517 451 2173 112 0 16 chr12 103610847 103611150 -40175305 - AluSx SINE Alu -14 298 1 327 308 134 58 chr12 103611492 103611584 -40174871 - L3 LINE CR1 -385 1192 1108 2345 86 7 3 chr12 103611584 103611886 -40174569 + AluSq SINE Alu 1 303 -10 327 308 134 58 chr12 103611886 103612069 -40174386 - L3 LINE CR1 -469 1108 896 730 253 26 5 chr12 103612080 103612270 -40174185 + MIR SINE MIR 1 194 -68 2528 55 3 0 chr12 103612295 103612588 -40173867 + AluY SINE Alu 1 294 -17 1963 145 0 23 chr12 103612600 103612904 -40173551 + AluJo SINE Alu 1 297 -15 512 286 18 23 chr12 103612964 103613135 -40173320 - MIR SINE MIR -73 189 20 1102 171 4 100 chr12 103613205 103613445 -40173010 - AluJb SINE Alu -95 217 1 2148 117 0 7 chr12 103613500 103613800 -40172655 + AluSx SINE Alu 1 298 -14 1790 163 10 26 chr12 103613806 103614113 -40172342 + AluJb SINE Alu 1 302 -10 348 302 22 43 chr12 103614113 103614252 -40172203 + MIR SINE MIR 22 157 -105 2236 105 14 0 chr12 103614257 103614551 -40171904 + AluSx SINE Alu 1 298 -14 215 333 0 0 chr12 103614660 103614729 -40171726 - L3 LINE CR1 -760 817 749 263 364 0 0 chr12 103614766 103614843 -40171612 - L3 LINE CR1 -1273 304 228 273 303 25 42 chr12 103615235 103615354 -40171101 - MIR SINE MIR -73 189 73 311 200 54 54 chr12 103615426 103615556 -40170899 + MER113 DNA MER1_type? 1 130 -391 1725 145 0 99 chr12 103615642 103615974 -40170481 + AluJb SINE Alu 1 299 -13 1054 170 102 124 chr12 103615974 103616368 -40170087 - MLT1B LTR MaLR 0 390 6 309 256 26 0 chr12 103616382 103616460 -40169995 + MER113 DNA MER1_type? 429 508 -13 961 171 25 0 chr12 103616649 103616807 -40169648 - AluSg/x SINE Alu -14 298 137 2411 97 3 0 chr12 103618130 103618441 -40168014 - AluSp SINE Alu 0 313 2 1717 193 0 10 chr12 103618445 103618746 -40167709 - AluJb SINE Alu -14 298 1 1962 138 47 3 chr12 103618874 103619171 -40167284 + AluSx SINE Alu 1 310 -2 2068 101 0 44 chr12 103619227 103619654 -40166801 + AluSx SINE Alu 1 312 0 2571 188 60 12 chr12 103619811 103620328 -40166127 + MLT1F LTR MaLR 1 542 0 2420 101 0 0 chr12 103620466 103620774 -40165681 - AluSq SINE Alu -5 308 1 560 263 69 82 chr12 103620813 103621121 -40165334 + MLT1K LTR MaLR 252 557 -31 1299 62 34 6 chr12 103621121 103621299 -40165156 + L1PA11 LINE L1 5992 6174 0 2372 76 10 3 chr12 103622303 103622607 -40163848 - AluSc SINE Alu -3 306 1 228 163 0 0 chr12 103623207 103623250 -40163205 + GA-rich Low_complexity Low_complexity 1 43 0 1655 185 6 22 chr12 103623266 103623580 -40162875 + AluJb SINE Alu 1 309 -3 1806 176 56 62 chr12 103623583 103623695 -40162760 + MLT1C LTR MaLR 6 117 -350 2252 92 14 3 chr12 103623695 103623987 -40162468 + AluSx SINE Alu 5 299 -13 1806 176 56 62 chr12 103623987 103624339 -40162116 + MLT1C LTR MaLR 117 467 0 1832 119 65 7 chr12 103624757 103625050 -40161405 + AluJb SINE Alu 1 310 -2 24 0 0 0 chr12 103625407 103625431 -40161024 + AT_rich Low_complexity Low_complexity 1 24 0 579 15 0 0 chr12 103625761 103625829 -40160626 + (CA)n Simple_repeat Simple_repeat 1 68 0 1433 154 0 0 chr12 103625884 103626111 -40160344 - AluJb SINE Alu 0 312 86 203 100 60 20 chr12 103626735 103626785 -40159670 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 124 0 0 chr12 103626917 103627215 -40159240 + AluSq SINE Alu 1 298 -15 2366 108 3 0 chr12 103627447 103627752 -40158703 + AluSx SINE Alu 1 306 -6 2055 124 54 40 chr12 103627826 103628196 -40158259 + THE1C LTR MaLR 1 375 0 216 211 0 35 chr12 103628213 103628270 -40158185 + (CA)n Simple_repeat Simple_repeat 2 56 0 731 250 17 6 chr12 103628405 103628577 -40157878 + MLT1G1 LTR MaLR 1 174 -421 993 172 0 0 chr12 103628588 103628745 -40157710 - FRAM SINE Alu -9 167 11 535 268 50 55 chr12 103629085 103629136 -40157319 - MIR SINE MIR -26 236 186 1835 166 14 0 chr12 103629136 103629426 -40157029 - AluJo SINE Alu -18 294 1 535 268 50 55 chr12 103629426 103629594 -40156861 - MIR SINE MIR -76 186 18 1748 130 142 75 chr12 103629638 103629701 -40156754 - MSTA LTR MaLR 0 428 371 1930 121 0 0 chr12 103629701 103629965 -40156490 + AluJo SINE Alu 34 297 -15 1748 130 142 75 chr12 103629965 103630302 -40156153 - MSTA LTR MaLR -57 371 1 776 297 128 53 chr12 103630319 103630734 -40155721 + LTR67 LTR ERVL 47 504 -53 2428 93 0 0 chr12 103630734 103631045 -40155410 - AluY SINE Alu 0 311 1 776 297 128 53 chr12 103631045 103631104 -40155351 + LTR67 LTR ERVL 504 557 0 383 269 146 0 chr12 103631698 103631828 -40154627 + MLT1L LTR MaLR 3 151 -464 329 250 75 0 chr12 103631956 103632036 -40154419 + MLT1L LTR MaLR 306 391 -224 185 0 0 39 chr12 103632041 103632067 -40154388 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 2173 100 0 0 chr12 103632071 103632374 -40154081 + AluSg SINE Alu 2 304 0 310 304 64 37 chr12 103632573 103632759 -40153696 - MLT2E LTR ERVL -344 177 1 441 207 11 0 chr12 103632761 103632848 -40153607 + HAL1 LINE L1 1533 1620 -887 930 198 0 12 chr12 103632852 103633019 -40153436 + FRAM SINE Alu 1 158 -18 2291 112 3 10 chr12 103633035 103633349 -40153106 + AluSx SINE Alu 1 312 0 795 264 11 67 chr12 103633355 103633624 -40152831 + HAL1 LINE L1 1637 1890 -617 742 190 115 110 chr12 103633765 103634124 -40152331 + MLT1E LTR MaLR 3 361 -265 2171 116 13 0 chr12 103634129 103634430 -40152025 + AluSq SINE Alu 1 305 -8 317 159 16 0 chr12 103634438 103634501 -40151954 + G-rich Low_complexity Low_complexity 4 67 0 1255 252 15 0 chr12 103634505 103634767 -40151688 + MLT1E LTR MaLR 328 593 0 1767 169 13 20 chr12 103635144 103635445 -40151010 + AluJb SINE Alu 1 299 -13 312 296 22 67 chr12 103635545 103635680 -40150775 + L1ME3A LINE L1 5963 6091 -79 2350 75 6 35 chr12 103635819 103636137 -40150318 + AluSq SINE Alu 1 309 -4 987 221 112 21 chr12 103636560 103636845 -40149610 + L1MC/D LINE L1 5286 5596 -2212 265 212 129 12 chr12 103636860 103636945 -40149510 + MLT1L LTR MaLR 3 97 -518 381 223 0 32 chr12 103636982 103637076 -40149379 - L2 LINE L2 -17 3296 3206 498 215 8 54 chr12 103637159 103637229 -40149226 + MER94 DNA DNA 8 71 -63 2334 92 7 3 chr12 103637229 103637533 -40148922 + AluSx SINE Alu 1 305 -7 498 215 8 54 chr12 103637533 103637592 -40148863 + MER94 DNA DNA 71 131 -3 337 289 96 96 chr12 103638090 103638381 -40148074 + MLT1L LTR MaLR 207 497 -118 2058 102 0 53 chr12 103638435 103638738 -40147717 + AluSx SINE Alu 12 298 -14 580 183 50 17 chr12 103638752 103638872 -40147583 + AluJo SINE Alu 9 132 -180 4158 140 91 66 chr12 103638956 103639358 -40147097 - MER4D LTR ERV1 -3 900 510 1803 151 0 7 chr12 103639358 103639636 -40146819 - AluJb SINE Alu -36 276 1 4158 140 91 66 chr12 103639636 103639655 -40146800 - MER4D LTR ERV1 -393 510 493 2129 89 10 31 chr12 103639655 103639988 -40146467 - AluSq SINE Alu 0 327 1 4158 140 91 66 chr12 103639988 103640442 -40146013 - MER4D LTR ERV1 -410 493 1 815 205 0 6 chr12 103640548 103640704 -40145751 + AluJo SINE Alu 137 291 -21 301 239 77 31 chr12 103641450 103641580 -40144875 - L1ME4a LINE L1 -22 6099 5964 2426 91 3 0 chr12 103641583 103641892 -40144563 - AluSx SINE Alu -2 310 1 2039 128 16 10 chr12 103642191 103642496 -40143959 + AluSg SINE Alu 1 307 -3 289 272 54 0 chr12 103642925 103643017 -40143438 + MIR3 SINE MIR 88 184 -24 421 258 39 32 chr12 103643361 103643449 -40143006 + MIR SINE MIR 103 189 -73 2339 135 155 44 chr12 103643449 103643601 -40142854 + LTR54 LTR ERV1 1 135 -375 1251 169 70 77 chr12 103643601 103643914 -40142541 + AluJb SINE Alu 1 311 -1 2339 135 155 44 chr12 103643914 103644090 -40142365 + LTR54 LTR ERV1 135 290 -220 2219 117 0 3 chr12 103644090 103644389 -40142066 + AluSq SINE Alu 1 298 -15 2339 135 155 44 chr12 103644389 103644518 -40141937 + LTR54 LTR ERV1 290 510 0 421 258 39 32 chr12 103644518 103644584 -40141871 + MIR SINE MIR 189 258 -4 254 371 60 7 chr12 103644599 103644750 -40141705 + L2 LINE L2 3102 3260 -12 1622 117 61 24 chr12 103644822 103645069 -40141386 - AluSg SINE Alu -6 304 49 25 0 0 0 chr12 103645083 103645108 -40141347 + AT_rich Low_complexity Low_complexity 1 25 0 1895 128 10 17 chr12 103645110 103645429 -40141026 + AluSg SINE Alu 1 317 0 714 233 15 4 chr12 103645576 103645750 -40140705 - L1ME4a LINE L1 -327 5794 5612 1716 179 3 14 chr12 103645752 103646067 -40140388 - AluJb SINE Alu 0 312 1 282 206 15 0 chr12 103646082 103646150 -40140305 + L1ME1 LINE L1 6093 6161 -5 279 0 0 0 chr12 103646177 103646208 -40140247 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1943 132 23 3 chr12 103646466 103646770 -40139685 - AluSx SINE Alu -2 310 1 380 240 72 32 chr12 103646794 103646919 -40139536 + L2 LINE L2 3160 3289 -24 256 150 117 0 chr12 103646946 103647006 -40139449 + L2 LINE L2 2330 2396 -918 2990 104 9 31 chr12 103647089 103647489 -40138966 + MER57B LTR ERV1 1 392 -42 2390 87 0 0 chr12 103647489 103647789 -40138666 - AluSx SINE Alu -12 300 1 2990 104 9 31 chr12 103647789 103647832 -40138623 + MER57B LTR ERV1 392 434 0 207 212 47 0 chr12 103647848 103647900 -40138555 - MER91B DNA MER1_type -53 87 32 1052 235 33 42 chr12 103647900 103648052 -40138403 + L2 LINE L2 2395 2544 -770 2037 137 14 0 chr12 103648052 103648345 -40138110 + AluJb SINE Alu 1 297 -15 1052 235 33 42 chr12 103648345 103648498 -40137957 + L2 LINE L2 2544 2697 -617 1313 146 10 10 chr12 103648498 103648703 -40137752 - AluJo SINE Alu -18 294 90 313 235 105 123 chr12 103648710 103648763 -40137692 + L2 LINE L2 2696 2748 -565 1936 148 14 20 chr12 103648763 103648883 -40137572 + L1MA4 LINE L1 5947 6066 -234 2083 120 37 3 chr12 103648883 103649182 -40137273 + AluSx SINE Alu 1 309 -3 1936 148 14 20 chr12 103649182 103649406 -40137049 + L1MA4 LINE L1 6066 6289 -11 313 235 105 123 chr12 103649406 103649567 -40136888 + L2 LINE L2 2748 2910 -403 1727 120 35 35 chr12 103649567 103649850 -40136605 + AluSx SINE Alu 1 283 -29 313 235 105 123 chr12 103649850 103650101 -40136354 + L2 LINE L2 2910 3311 -2 2240 93 14 0 chr12 103651049 103651340 -40135115 + AluSq SINE Alu 1 295 -18 1773 89 30 4 chr12 103651377 103651614 -40134841 + AluSx SINE Alu 43 285 -27 243 61 0 0 chr12 103651806 103651839 -40134616 + (TTG)n Simple_repeat Simple_repeat 2 34 0 257 167 74 0 chr12 103651846 103651900 -40134555 - LTR8 LTR ERV1 -166 525 468 2256 93 7 0 chr12 103652010 103652301 -40134154 + AluSq SINE Alu 1 293 -20 1983 84 3 96 chr12 103652625 103652947 -40133508 + AluSx SINE Alu 1 292 -20 616 28 0 0 chr12 103653408 103653480 -40132975 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 635 14 0 0 chr12 103654157 103654229 -40132226 + tRNA-Trp tRNA tRNA 1 72 -3 237 233 105 0 chr12 103654674 103654760 -40131695 - MIR SINE MIR -86 176 82 2236 122 0 0 chr12 103654850 103655146 -40131309 + AluSg SINE Alu 2 297 -13 1252 139 117 70 chr12 103655152 103655425 -40131030 + MLT1B LTR MaLR 105 390 0 564 176 107 8 chr12 103655614 103655745 -40130710 + MER5A DNA MER1_type 42 185 -4 3682 81 47 26 chr12 103656308 103656701 -40129754 - MER41A LTR ERV1 -12 542 159 2622 62 7 0 chr12 103656701 103657006 -40129449 - AluSg SINE Alu -3 307 1 3682 81 47 26 chr12 103657006 103657090 -40129365 - MER41A LTR ERV1 -395 159 50 2511 75 10 0 chr12 103657090 103657397 -40129058 - AluSp SINE Alu -3 310 1 3682 81 47 26 chr12 103657397 103657449 -40129006 - MER41A LTR ERV1 -504 50 1 2303 107 27 68 chr12 103657449 103658053 -40128402 + MER4A LTR ERV1 20 664 0 371 215 111 7 chr12 103658178 103658313 -40128142 - L1ME4a LINE L1 -9 6112 5964 219 69 0 0 chr12 103658313 103658342 -40128113 + (T)n Simple_repeat Simple_repeat 1 29 0 1050 133 0 58 chr12 103658342 103658390 -40128065 - AluJo SINE Alu -130 182 133 2337 89 10 3 chr12 103658390 103658693 -40127762 - AluSq SINE Alu -8 305 1 1050 133 0 58 chr12 103658693 103658832 -40127623 - AluJo SINE Alu -179 133 6 417 271 116 10 chr12 103658835 103659034 -40127421 - L1ME4a LINE L1 -270 5851 5632 2111 107 10 0 chr12 103659050 103659341 -40127114 - AluSg SINE Alu -16 294 1 1842 105 90 0 chr12 103659351 103659618 -40126837 - AluSx SINE Alu -21 291 1 2192 79 38 0 chr12 103659816 103660106 -40126349 - AluSp SINE Alu -8 305 5 2113 132 0 7 chr12 103660174 103660478 -40125977 + AluSx SINE Alu 1 302 -10 1885 108 4 12 chr12 103660488 103660747 -40125708 + AluSq SINE Alu 3 259 -54 393 143 0 183 chr12 103660833 103660941 -40125514 + MER4A LTR ERV1 412 496 -168 1860 149 25 4 chr12 103660941 103661222 -40125233 - AluJb SINE Alu -25 287 1 393 143 0 183 chr12 103661222 103661239 -40125216 + MER4A LTR ERV1 496 514 -150 1228 316 110 52 chr12 103661415 103662382 -40124073 - L2 LINE L2 -1869 1445 423 21 0 0 0 chr12 103664559 103664580 -40121875 + GC_rich Low_complexity Low_complexity 1 21 0 2420 74 0 3 chr12 103665253 103665565 -40120890 - AluSp SINE Alu -2 311 1 202 210 81 32 chr12 103666107 103666169 -40120286 + L2 LINE L2 3248 3312 -1 2037 56 88 28 chr12 103666335 103666620 -40119835 + AluSx SINE Alu 1 302 -10 1054 174 19 81 chr12 103666760 103667019 -40119436 - AluJo SINE Alu -26 286 44 2337 68 3 3 chr12 103667343 103667636 -40118819 - AluY SINE Alu -18 293 1 1760 159 52 0 chr12 103667663 103667953 -40118502 - AluSx SINE Alu -7 305 1 2447 90 0 0 chr12 103668403 103668714 -40117741 - AluSx SINE Alu -1 311 1 369 0 0 0 chr12 103668727 103668768 -40117687 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 2192 102 0 14 chr12 103668779 103669063 -40117392 - AluSg SINE Alu -30 280 1 1512 108 205 0 chr12 103669081 103669330 -40117125 - AluY SINE Alu -1 300 1 2327 84 0 16 chr12 103669559 103669870 -40116585 - AluY SINE Alu -5 306 1 2107 103 7 14 chr12 103670203 103670485 -40115970 - AluSg SINE Alu -27 283 4 1620 164 68 7 chr12 103670493 103670773 -40115682 - AluJo SINE Alu -15 297 1 248 333 101 18 chr12 103670872 103671100 -40115355 + MIR SINE MIR 1 247 -15 278 269 64 64 chr12 103671246 103671387 -40115068 + MIR SINE MIR 118 258 -4 2010 109 57 14 chr12 103671730 103672013 -40114442 + AluSx SINE Alu 1 295 -17 2061 136 0 10 chr12 103672128 103672429 -40114026 - AluSx SINE Alu -6 306 9 1214 119 0 0 chr12 103672750 103672909 -40113546 + AluSg SINE Alu 1 159 -151 2119 105 0 51 chr12 103673159 103673473 -40112982 + AluSx SINE Alu 1 298 -14 295 315 114 21 chr12 103673699 103674077 -40112378 - MER4D LTR ERV1 -8 895 483 1329 201 41 112 chr12 103676693 103677274 -40109181 + HAL1b LINE L1 612 1151 -197 322 384 11 7 chr12 103678116 103678397 -40108058 - AluSx SINE Alu 0 302 21 24 32 0 0 chr12 103678797 103678828 -40107627 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 103679161 103679186 -40107269 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 103679288 103679309 -40107146 + (G)n Simple_repeat Simple_repeat 1 21 0 207 100 0 0 chr12 103680440 103680470 -40105985 + (T)n Simple_repeat Simple_repeat 1 30 0 290 244 286 0 chr12 103680676 103680795 -40105660 - MIR SINE MIR -106 156 4 685 135 18 0 chr12 103681261 103681372 -40105083 + L1MB7 LINE L1 6053 6165 -19 273 199 42 60 chr12 103681925 103682091 -40104364 + (CACCAT)n Simple_repeat Simple_repeat 1 163 0 184 287 170 72 chr12 103683150 103683415 -40103040 - L2 LINE L2 -165 3107 2817 22 0 0 0 chr12 103683983 103684005 -40102450 + AT_rich Low_complexity Low_complexity 1 22 0 1131 209 89 123 chr12 103684306 103685057 -40101398 + MER20B DNA MER1_type 36 761 -22 3909 168 40 10 chr12 103685396 103686175 -40100280 - L1 LINE L1 -1181 4965 4164 2130 124 7 0 chr12 103687137 103687435 -40099020 + AluSx SINE Alu 1 300 -12 1122 120 53 48 chr12 103687976 103688184 -40098271 + MER2 DNA MER2_type 1 209 -136 356 190 0 0 chr12 103688211 103688269 -40098186 + MER2 DNA MER2_type 268 325 -20 2446 88 0 0 chr12 103688356 103688662 -40097793 + AluSc SINE Alu 1 306 -3 1679 150 0 83 chr12 103688894 103689221 -40097234 + AluJb SINE Alu 1 300 -12 205 309 0 0 chr12 103689850 103689905 -40096550 + MIR3 SINE MIR 137 191 -17 2472 70 0 10 chr12 103689941 103690255 -40096200 - AluY SINE Alu 0 311 1 1122 120 53 48 chr12 103690651 103690859 -40095596 + MER2 DNA MER2_type 1 209 -136 356 190 0 0 chr12 103690886 103690944 -40095511 + MER2 DNA MER2_type 268 325 -20 1658 179 6 28 chr12 103691031 103691350 -40095105 + AluJb SINE Alu 1 312 0 2310 107 0 3 chr12 103691409 103691709 -40094746 - AluSq SINE Alu -14 299 1 1688 172 27 3 chr12 103691916 103692213 -40094242 - AluJo SINE Alu -8 304 1 1788 184 3 3 chr12 103692409 103692708 -40093747 + AluJo SINE Alu 1 299 -13 1641 138 16 4 chr12 103693344 103693590 -40092865 - AluSq SINE Alu -60 253 5 1961 144 20 0 chr12 103693590 103693889 -40092566 - AluSx SINE Alu -7 305 1 24 53 0 0 chr12 103694592 103694630 -40091825 + AT_rich Low_complexity Low_complexity 1 38 0 319 211 70 0 chr12 103697406 103697477 -40088978 - MER5C DNA MER1_type -247 77 2 2186 113 10 0 chr12 103698712 103699005 -40087450 - AluSq SINE Alu -17 296 1 2183 103 0 3 chr12 103700716 103701007 -40085448 - AluSq SINE Alu -23 290 1 2309 100 0 3 chr12 103701587 103701888 -40084567 - AluSx SINE Alu -11 301 2 730 237 114 78 chr12 103701915 103702361 -40084094 - L1MC5 LINE L1 -168 7793 7400 733 181 60 111 chr12 103702361 103702495 -40083960 + MER3 DNA MER1_type 5 125 -84 2186 94 37 0 chr12 103702495 103702792 -40083663 - AluSp SINE Alu -4 309 2 733 181 60 111 chr12 103702792 103702873 -40083582 + MER3 DNA MER1_type 125 209 0 730 237 114 78 chr12 103702873 103702990 -40083465 - L1MC5 LINE L1 -561 7400 7289 1725 284 182 25 chr12 103703115 103704362 -40082093 - L1MC4a LINE L1 -847 6961 5519 295 243 76 76 chr12 103704481 103704625 -40081830 - MER5B DNA MER1_type -30 148 5 2051 124 19 13 chr12 103704695 103705002 -40081453 + AluSx SINE Alu 1 309 -3 222 202 313 20 chr12 103705476 103705575 -40080880 + MER5A DNA MER1_type 62 189 0 23 54 0 0 chr12 103707226 103707263 -40079192 + AT_rich Low_complexity Low_complexity 1 37 0 2496 68 0 0 chr12 103707854 103708148 -40078307 - AluSx SINE Alu -18 294 1 799 193 0 0 chr12 103708676 103708790 -40077665 + FLAM_A SINE Alu 1 114 -19 2134 93 3 51 chr12 103709194 103709507 -40076948 - AluSq SINE Alu -15 298 1 2294 164 82 11 chr12 103709748 103710072 -40076383 + L1M3 LINE L1 4992 5291 -880 2413 75 3 0 chr12 103710072 103710367 -40076088 + AluSp SINE Alu 1 296 -17 2294 164 82 11 chr12 103710367 103710650 -40075805 + L1M3 LINE L1 5291 5667 -504 1941 95 44 22 chr12 103710650 103710923 -40075532 + AluY SINE Alu 1 279 -32 191 368 142 0 chr12 103711194 103711300 -40075155 + L2 LINE L2 3145 3265 -7 2122 110 7 3 chr12 103711659 103711951 -40074504 - AluSx SINE Alu -18 294 2 619 226 126 75 chr12 103711978 103712416 -40074039 - L1MC5 LINE L1 -168 7793 7334 1707 144 17 11 chr12 103712574 103712917 -40073538 - L1MB3 LINE L1 -272 5899 5563 918 221 14 42 chr12 103713647 103713932 -40072523 - AluJb SINE Alu -26 286 10 2434 74 7 0 chr12 103714475 103714771 -40071684 - AluSq SINE Alu -15 298 1 2303 102 0 7 chr12 103716235 103716540 -40069915 + AluSc SINE Alu 1 303 -6 1429 111 259 4 chr12 103716615 103716858 -40069597 - AluSx SINE Alu -7 305 1 704 273 15 25 chr12 103718172 103718370 -40068085 - MIR SINE MIR -6 256 61 1579 150 90 19 chr12 103718606 103718873 -40067582 + AluSx SINE Alu 1 286 -26 2161 77 59 0 chr12 103718935 103719222 -40067233 - AluSx SINE Alu -8 304 1 1902 138 14 3 chr12 103719748 103720031 -40066424 + AluSx SINE Alu 2 287 -25 2011 113 6 53 chr12 103720039 103720357 -40066098 + AluSq SINE Alu 1 303 -10 346 143 186 14 chr12 103720635 103720705 -40065750 + Tigger5 DNA MER2_type 2241 2322 -1 529 246 99 43 chr12 103720706 103720917 -40065538 + L1ME3 LINE L1 5834 6056 -106 828 194 56 61 chr12 103720917 103721097 -40065358 + AluJo SINE Alu 2 180 -132 253 218 11 46 chr12 103721120 103721207 -40065248 + L1MDb LINE L1 1289 1372 -5037 2459 43 3 10 chr12 103721217 103721516 -40064939 - AluSp SINE Alu -16 297 1 2337 52 0 14 chr12 103721690 103721976 -40064479 + AluY SINE Alu 1 282 -29 895 222 0 84 chr12 103722160 103722493 -40063962 - AluJb SINE Alu -1 311 7 408 298 152 32 chr12 103722585 103722857 -40063598 + L1MC4a LINE L1 5666 5989 -1819 462 36 0 0 chr12 103722857 103722913 -40063542 + (TG)n Simple_repeat Simple_repeat 1 56 0 408 298 152 32 chr12 103722913 103722982 -40063473 + L1MC4a LINE L1 5989 6048 -1760 2121 133 0 7 chr12 103723016 103723324 -40063131 - AluJb SINE Alu -6 306 1 246 246 16 0 chr12 103723349 103723410 -40063045 + L1ME3A LINE L1 5675 5736 -434 308 320 87 53 chr12 103723598 103723748 -40062707 + L1ME3A LINE L1 5963 6117 -53 935 155 62 0 chr12 103723748 103723909 -40062546 + FRAM SINE Alu 1 166 -10 335 138 52 0 chr12 103723927 103723985 -40062470 + L1M3 LINE L1 4673 4733 -1413 992 156 0 17 chr12 103724001 103724174 -40062281 - AluSg/x SINE Alu -3 307 138 2237 122 0 0 chr12 103724182 103724478 -40061977 - AluSx SINE Alu -14 298 3 2467 174 70 17 chr12 103724479 103724764 -40061691 + L1M3 LINE L1 4719 4987 -1184 1544 163 85 18 chr12 103724764 103725047 -40061408 + AluJb SINE Alu 1 302 -10 2467 174 70 17 chr12 103725047 103725365 -40061090 + L1M3 LINE L1 4987 5287 -884 2432 75 3 0 chr12 103725365 103725659 -40060796 + AluSx SINE Alu 1 295 -17 2467 174 70 17 chr12 103725659 103725942 -40060513 + L1M3 LINE L1 5287 5667 -504 2001 81 44 22 chr12 103725942 103726215 -40060240 + AluY SINE Alu 1 279 -32 266 122 0 20 chr12 103726215 103726264 -40060191 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 2099 121 0 0 chr12 103726265 103726545 -40059910 - AluSx SINE Alu -32 280 1 679 216 0 8 chr12 103726685 103726819 -40059636 - FLAM_A SINE Alu -2 140 8 2143 130 3 0 chr12 103726855 103727162 -40059293 + AluSx SINE Alu 1 308 -4 1040 173 12 18 chr12 103727175 103727343 -40059112 + FAM SINE Alu 1 167 -8 914 150 0 0 chr12 103728089 103728222 -40058233 + FLAM_C SINE Alu 1 133 0 2161 127 0 3 chr12 103728235 103728542 -40057913 + AluJb SINE Alu 1 306 -6 799 273 171 27 chr12 103728546 103728645 -40057810 - L1MC4a LINE L1 -1709 6099 6016 462 36 0 0 chr12 103728645 103728701 -40057754 + (CA)n Simple_repeat Simple_repeat 1 56 0 799 273 171 27 chr12 103728701 103729032 -40057423 - L1MC4a LINE L1 -1792 6016 5599 383 265 103 8 chr12 103729032 103729058 -40057397 - FLAM_A SINE Alu -174 128 106 1850 164 0 19 chr12 103729058 103729369 -40057086 + AluJb SINE Alu 1 305 -7 383 265 103 8 chr12 103729369 103729459 -40056996 - FLAM_A SINE Alu -196 106 1 799 273 171 27 chr12 103729459 103729478 -40056977 - L1MC4a LINE L1 -2209 5599 5584 2534 99 33 30 chr12 103729613 103729768 -40056687 + THE1B LTR MaLR 1 154 -210 360 0 0 0 chr12 103729768 103729808 -40056647 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2183 90 0 4 chr12 103729808 103730085 -40056370 - AluSc SINE Alu -32 277 2 2534 99 33 30 chr12 103730085 103730291 -40056164 + THE1B LTR MaLR 153 364 0 2310 82 3 0 chr12 103730615 103730908 -40055547 - AluSg SINE Alu -16 294 1 2382 78 14 0 chr12 103730952 103731247 -40055208 - AluSp SINE Alu -14 299 1 309 197 113 0 chr12 103731445 103731516 -40054939 + LTR50 LTR ERVL 1 79 -716 2226 114 0 0 chr12 103731672 103731971 -40054484 - AluSg SINE Alu -11 299 1 1168 149 0 11 chr12 103731974 103732155 -40054300 - AluSg/x SINE Alu 0 312 134 2134 104 20 10 chr12 103732156 103732454 -40054001 - AluSq SINE Alu -12 301 1 712 211 206 3 chr12 103732640 103732939 -40053516 + LTR50 LTR ERVL 340 776 -19 3544 164 98 46 chr12 103733028 103733649 -40052806 - MER21A LTR ERV1 -3 928 205 1804 143 0 0 chr12 103733649 103733908 -40052547 - AluSq SINE Alu -24 289 31 3544 164 98 46 chr12 103733908 103734114 -40052341 - MER21A LTR ERV1 -726 205 11 1193 118 0 6 chr12 103734183 103734353 -40052102 - AluSg/x SINE Alu -10 300 132 1856 116 91 7 chr12 103734353 103734629 -40051826 - AluSq SINE Alu -14 299 1 182 267 56 56 chr12 103734902 103734992 -40051463 - L2 LINE L2 0 3313 3224 605 205 33 0 chr12 103735149 103735271 -40051184 + L1MC4a LINE L1 6697 6822 -986 879 128 0 8 chr12 103735271 103735396 -40051059 + FLAM_C SINE Alu 1 124 -19 41 0 0 0 chr12 103735396 103735437 -40051018 + AT_rich Low_complexity Low_complexity 1 41 0 2279 192 56 71 chr12 103735442 103735548 -40050907 + L1MC4 LINE L1 6895 7001 -1041 1732 152 33 33 chr12 103735548 103735850 -40050605 + AluJo SINE Alu 1 302 -10 2279 192 56 71 chr12 103735850 103735953 -40050502 + L1MC4 LINE L1 7001 7104 -938 1882 157 0 4 chr12 103735953 103736253 -40050202 - AluSx SINE Alu 0 301 3 2279 192 56 71 chr12 103736253 103736316 -40050139 + L1MC4 LINE L1 7104 7166 -876 2044 128 16 26 chr12 103736316 103736628 -40049827 - AluSx SINE Alu -3 309 1 2279 192 56 71 chr12 103736628 103737044 -40049411 + L1MC4 LINE L1 7166 7576 -466 1712 34 0 0 chr12 103737039 103737247 -40049208 - L1PA7 LINE L1 -704 5468 5261 * 5957 48 6 0 chr12 103737247 103737928 -40048527 + L1PA7 LINE L1 5465 6152 -2 1500 174 0 16 chr12 103737970 103738228 -40048227 + AluSx SINE Alu 1 254 -58 865 202 54 36 chr12 103738235 103738458 -40047997 + L1MC4 LINE L1 7613 7839 -203 1916 141 0 4 chr12 103738458 103738735 -40047720 + AluSx SINE Alu 1 276 -36 318 147 73 29 chr12 103738761 103738829 -40047626 + L1MC4 LINE L1 7824 7894 -148 206 247 13 0 chr12 103738833 103738910 -40047545 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 539 172 17 17 chr12 103738925 103739041 -40047414 + L1MC4 LINE L1 7927 8042 0 401 311 143 59 chr12 103739470 103739792 -40046663 + MLT1J2 LTR MaLR 72 420 -30 189 74 0 0 chr12 103739867 103739894 -40046561 + (TTA)n Simple_repeat Simple_repeat 2 28 0 669 164 8 152 chr12 103739976 103740148 -40046307 + L1MC4 LINE L1 6450 6577 -1465 2027 127 20 0 chr12 103740148 103740447 -40046008 - AluSx SINE Alu -3 309 5 669 164 8 152 chr12 103740447 103740524 -40045931 + L1MC4 LINE L1 6577 6663 -1379 478 105 74 25 chr12 103740565 103740727 -40045728 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 2332 91 3 10 chr12 103740768 103741077 -40045378 + AluSq SINE Alu 1 307 -6 2263 110 7 0 chr12 103741079 103741388 -40045067 + AluSp SINE Alu 1 311 -2 610 62 44 9 chr12 103741398 103741511 -40044944 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 1366 179 92 68 chr12 103741528 103741864 -40044591 - MER2 DNA MER2_type 0 344 1 3995 170 67 148 chr12 103741872 103742131 -40044324 + L1MC4 LINE L1 6670 6949 -1093 932 147 7 20 chr12 103742131 103742281 -40044174 + FRAM SINE Alu 14 161 -15 3995 170 67 148 chr12 103742281 103743226 -40043229 + L1MC4 LINE L1 6949 7912 -130 263 203 13 0 chr12 103743271 103743350 -40043105 + (TA)n Simple_repeat Simple_repeat 1 80 0 209 119 24 0 chr12 103743355 103743397 -40043058 + GA-rich Low_complexity Low_complexity 2 44 0 640 162 18 0 chr12 103743398 103743509 -40042946 + L1MC4 LINE L1 7920 8032 -10 914 120 0 76 chr12 103743509 103743667 -40042788 + AluSg/x SINE Alu 135 280 -32 186 43 0 0 chr12 103743672 103743695 -40042760 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2014 124 39 0 chr12 103744088 103744371 -40042084 - AluY SINE Alu -17 294 1 2252 126 0 0 chr12 103744438 103744748 -40041707 - AluSq SINE Alu -3 310 1 2028 143 6 22 chr12 103744757 103745072 -40041383 - AluSx SINE Alu -2 310 1 2160 127 3 22 chr12 103745279 103745593 -40040862 - AluSq SINE Alu -5 308 1 289 284 126 31 chr12 103745596 103745723 -40040732 + MER5A DNA MER1_type 36 174 -4 2238 119 3 3 chr12 103745985 103746297 -40040158 + AluSq SINE Alu 2 313 0 204 40 0 0 chr12 103746492 103746517 -40039938 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 109 7 0 chr12 103746517 103746828 -40039627 + AluSx SINE Alu 1 313 0 2255 114 0 3 chr12 103746828 103747135 -40039320 + AluSx SINE Alu 1 306 -6 2352 94 0 3 chr12 103747336 103747634 -40038821 + AluSq SINE Alu 1 297 -16 957 301 71 52 chr12 103747745 103748323 -40038132 + MLT2F LTR ERVL 67 655 -8 2002 124 29 13 chr12 103748519 103748825 -40037630 + AluSx SINE Alu 1 311 -1 706 281 79 13 chr12 103748826 103749054 -40037401 - ERVL LTR ERVL -5071 693 451 2421 87 0 6 chr12 103749173 103749485 -40036970 + AluY SINE Alu 1 310 -1 2179 104 3 14 chr12 103749630 103749927 -40036528 - AluSg SINE Alu -16 294 1 590 258 93 46 chr12 103749942 103750121 -40036334 + ERVL-E LTR ERVL 452 621 -5143 1789 174 0 7 chr12 103750121 103750426 -40036029 - AluJb SINE Alu -9 303 1 590 258 93 46 chr12 103750426 103750578 -40035877 + ERVL-E LTR ERVL 621 872 -4892 1555 55 6 0 chr12 103750583 103750765 -40035690 + AluSp SINE Alu 35 217 -96 483 313 12 12 chr12 103750915 103751081 -40035374 + ERVL-E LTR ERVL 5592 5757 -7 727 200 29 9 chr12 103751840 103751994 -40034461 + MLT2E LTR ERVL 2 157 -471 454 271 0 16 chr12 103752005 103752127 -40034328 + MLT2F LTR ERVL 235 354 -309 202 350 58 22 chr12 103752299 103752436 -40034019 + L2 LINE L2 2734 2875 -439 368 286 62 57 chr12 103752978 103753058 -40033397 - L1ME LINE L1 -440 5730 5652 1835 168 14 7 chr12 103753058 103753355 -40033100 + AluSx SINE Alu 1 299 -13 368 286 62 57 chr12 103753355 103753466 -40032989 - L1ME LINE L1 -518 5652 5538 470 113 0 62 chr12 103753485 103753565 -40032890 + FLAM SINE Alu 57 131 -12 1086 124 59 0 chr12 103753826 103753995 -40032460 - AluSg/x SINE Alu 0 312 134 2294 108 3 10 chr12 103753995 103754309 -40032146 - AluSq SINE Alu -1 312 1 265 205 196 79 chr12 103754309 103754505 -40031950 - L1ME LINE L1 -831 5513 5285 770 158 0 43 chr12 103754505 103754644 -40031811 - FLAM_C SINE Alu 0 133 1 265 205 196 79 chr12 103754644 103754676 -40031779 - L1ME LINE L1 -1059 5285 5258 2543 263 50 49 chr12 103754734 103755083 -40031372 - L1ME LINE L1 -838 5308 4961 2250 113 7 3 chr12 103755083 103755393 -40031062 + AluSx SINE Alu 1 311 -1 2543 263 50 49 chr12 103755393 103756151 -40030304 - L1ME LINE L1 -1185 4961 4199 1998 166 70 21 chr12 103756189 103756505 -40029950 + Tigger3b DNA MER2_type 2 342 -2686 2442 70 3 10 chr12 103756505 103756803 -40029652 + AluSc SINE Alu 1 296 -13 1998 166 70 21 chr12 103756803 103756872 -40029583 + Tigger3b DNA MER2_type 342 406 -825 1857 114 0 4 chr12 103756872 103757117 -40029338 + AluSx SINE Alu 50 293 -19 477 0 0 0 chr12 103757118 103757171 -40029284 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 773 192 0 15 chr12 103757207 103757337 -40029118 - FLAM_C SINE Alu -14 129 2 2191 118 7 7 chr12 103757340 103757644 -40028811 - AluSx SINE Alu -7 305 2 1783 182 176 3 chr12 103757648 103758136 -40028319 - L1ME2 LINE L1 -275 5958 5346 2270 111 3 0 chr12 103758136 103758434 -40028021 - AluSg SINE Alu -11 299 1 1783 182 176 3 chr12 103758434 103758507 -40027948 - L1ME2 LINE L1 -887 5346 5287 2197 220 95 18 chr12 103758548 103759059 -40027396 - L1ME2 LINE L1 -3193 3022 2437 2415 69 3 3 chr12 103759059 103759363 -40027092 - AluY SINE Alu -7 304 1 2197 220 95 18 chr12 103759363 103759577 -40026878 - L1ME2 LINE L1 -3778 2437 2241 335 113 324 0 chr12 103759582 103759653 -40026802 - MER30 DNA MER1_type 0 230 137 372 198 0 81 chr12 103759670 103759699 -40026756 + Tigger5 DNA MER2_type 1 31 -387 2092 87 18 3 chr12 103759699 103759985 -40026470 + AluSc SINE Alu 1 290 -19 372 198 0 81 chr12 103759985 103760040 -40026415 + Tigger5 DNA MER2_type 31 78 -340 268 220 0 0 chr12 103760040 103760090 -40026365 - Tigger5 DNA MER2_type -3 2320 2271 810 255 154 14 chr12 103760101 103760524 -40025931 - L1ME2 LINE L1 -4154 2242 1761 313 241 54 45 chr12 103760698 103760749 -40025706 - MIR SINE MIR -65 197 148 540 211 124 31 chr12 103760749 103760832 -40025623 - MER45A DNA AcHobo -1403 178 104 2337 90 0 0 chr12 103760832 103761133 -40025322 + AluSx SINE Alu 1 301 -11 540 211 124 31 chr12 103761133 103761210 -40025245 - MER45A DNA AcHobo -1477 104 3 313 241 54 45 chr12 103761210 103761270 -40025185 - MIR SINE MIR -114 148 85 25 31 0 0 chr12 103764707 103764739 -40021716 + AT_rich Low_complexity Low_complexity 1 32 0 1920 138 26 22 chr12 103765125 103765436 -40021019 + AluSx SINE Alu 1 312 0 546 204 164 0 chr12 103765652 103765804 -40020651 - MER44D DNA MER2_type -162 447 1 2016 113 3 42 chr12 103765806 103766116 -40020339 - AluSx SINE Alu -13 299 2 2332 64 50 3 chr12 103767157 103767454 -40019001 - AluYa5 SINE Alu 0 311 1 2324 78 31 0 chr12 103767454 103767746 -40018709 - AluSp SINE Alu -11 302 1 1381 168 33 0 chr12 103768627 103768795 -40017660 - AluSx SINE Alu -8 304 124 2410 84 7 3 chr12 103768795 103769105 -40017350 - AluSq SINE Alu -2 311 1 1381 168 33 0 chr12 103769105 103769180 -40017275 - AluSx SINE Alu -188 124 53 21 36 0 0 chr12 103769471 103769499 -40016956 + AT_rich Low_complexity Low_complexity 1 28 0 2250 92 10 0 chr12 103770564 103770857 -40015598 - AluSp SINE Alu -17 296 1 534 253 76 57 chr12 103771702 103771931 -40014524 - MLT1G LTR MaLR -332 258 35 2381 72 7 0 chr12 103772366 103772657 -40013798 + AluSp SINE Alu 2 294 -19 216 0 0 0 chr12 103772657 103772681 -40013774 + (TA)n Simple_repeat Simple_repeat 2 25 0 960 186 164 19 chr12 103772890 103773153 -40013302 - AluJo SINE Alu -1 301 1 1766 172 10 3 chr12 103773166 103773456 -40012999 - AluJo SINE Alu -20 292 1 31 0 0 0 chr12 103773460 103773491 -40012964 + AT_rich Low_complexity Low_complexity 1 31 0 1824 157 39 0 chr12 103773531 103773811 -40012644 + AluJb SINE Alu 1 291 -21 2070 120 7 7 chr12 103773929 103774220 -40012235 + AluSx SINE Alu 1 291 -21 1891 134 28 3 chr12 103774230 103774521 -40011934 + AluJo SINE Alu 1 298 -14 23 33 0 0 chr12 103774724 103774754 -40011701 + AT_rich Low_complexity Low_complexity 1 30 0 1162 142 34 0 chr12 103775307 103775511 -40010944 - MER6 DNA MER2_type -22 843 633 2161 114 0 7 chr12 103775512 103775809 -40010646 + AluSg SINE Alu 1 295 -15 546 204 164 0 chr12 103776281 103776433 -40010022 - MER44D DNA MER2_type -162 447 1 792 239 13 52 chr12 103776435 103776745 -40009710 - AluSq SINE Alu -3 300 3 1723 92 0 38 chr12 103777325 103777565 -40008890 + AluSx SINE Alu 56 286 -26 1800 175 3 3 chr12 103777650 103777947 -40008508 + AluSx SINE Alu 3 299 -13 1395 150 12 114 chr12 103777951 103778284 -40008171 + AluSx SINE Alu 3 301 -1 273 242 0 0 chr12 103778743 103778805 -40007650 + MIR SINE MIR 195 256 -6 1895 126 3 11 chr12 103779727 103780012 -40006443 + AluSx SINE Alu 23 305 -7 2206 69 9 87 chr12 103780022 103780355 -40006100 + AluY SINE Alu 1 307 -4 590 116 11 0 chr12 103780905 103781000 -40005455 + AluY SINE Alu 154 249 -62 453 81 81 41 chr12 103782100 103782272 -40004183 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1952 115 42 48 chr12 103782282 103782595 -40003860 - AluSp SINE Alu -2 311 1 2190 103 3 3 chr12 103782747 103783039 -40003416 - AluSg SINE Alu -18 292 1 727 129 0 9 chr12 103783107 103783223 -40003232 + FLAM_C SINE Alu 4 118 -15 189 324 42 0 chr12 103783268 103783339 -40003116 - MIR3 SINE MIR -21 187 114 2322 107 0 3 chr12 103783340 103783648 -40002807 + AluSx SINE Alu 1 307 -5 225 244 167 11 chr12 103784018 103784108 -40002347 + MIR SINE MIR 83 186 -76 2476 81 0 0 chr12 103784171 103784467 -40001988 + AluSc SINE Alu 1 296 -13 1574 184 18 3 chr12 103784619 103784901 -40001554 + AluJo SINE Alu 1 286 -26 25 65 0 0 chr12 103785253 103785299 -40001156 + AT_rich Low_complexity Low_complexity 1 46 0 2357 75 10 0 chr12 103785358 103785653 -40000802 - AluSx SINE Alu -14 298 1 1277 169 153 4 chr12 103785671 103785920 -40000535 - AluJo SINE Alu -26 286 1 807 155 31 0 chr12 103785947 103786076 -40000379 - FLAM_C SINE Alu 0 133 1 2291 78 4 4 chr12 103787176 103787479 -39998976 - AluY SINE Alu 0 303 1 2069 138 3 3 chr12 103789339 103789643 -39996812 - AluSx SINE Alu -8 304 1 2675 52 0 0 chr12 103789804 103790112 -39996343 - AluY SINE Alu -3 308 1 469 129 0 86 chr12 103790380 103790426 -39996029 - AluY SINE Alu -232 86 50 2821 81 20 0 chr12 103790426 103790783 -39995672 - THE1B LTR MaLR 0 364 1 469 129 0 86 chr12 103790783 103790829 -39995626 - AluY SINE Alu -268 50 2 637 286 90 16 chr12 103790829 103791018 -39995437 - MLT1H1 LTR MaLR -311 244 42 437 304 75 9 chr12 103791095 103791322 -39995133 + MIR SINE MIR 16 257 -5 225 206 0 110 chr12 103791377 103791450 -39995005 - L2 LINE L2 0 3272 3208 190 252 175 39 chr12 103792318 103792421 -39994034 - L3 LINE CR1 -1 1576 1460 2226 119 7 0 chr12 103793173 103793475 -39992980 + AluSp SINE Alu 1 304 -9 3434 119 40 46 chr12 103794274 103794341 -39992114 - MER4A LTR ERV1 0 600 534 2401 90 0 3 chr12 103794341 103794642 -39991813 + AluSg SINE Alu 1 300 -10 3434 119 40 46 chr12 103794642 103795178 -39991277 - MER4A LTR ERV1 -66 534 1 241 340 53 5 chr12 103796479 103796685 -39989770 + L2 LINE L2 661 876 -2438 773 305 56 5 chr12 103796722 103797116 -39989339 + L2 LINE L2 2228 2641 -673 446 272 171 59 chr12 103797206 103797491 -39988964 + L2 LINE L2 2891 3229 -84 2357 63 0 30 chr12 103797491 103797792 -39988663 + AluY SINE Alu 1 292 -19 446 272 171 59 chr12 103797792 103797881 -39988574 + L2 LINE L2 3229 3307 -6 6079 131 16 29 chr12 103798700 103800033 -39986422 - L1MA4 LINE L1 -47 6253 4938 268 321 37 18 chr12 103800040 103800149 -39986306 + L2 LINE L2 2927 3037 -235 844 266 163 42 chr12 103800158 103800723 -39985732 - L2 LINE L2 -3 3310 2684 321 248 182 42 chr12 103800695 103800909 -39985546 + L2 LINE L2 3027 3270 -2 * 216 0 0 0 chr12 103801497 103801521 -39984934 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 103801843 103801864 -39984591 + AT_rich Low_complexity Low_complexity 1 21 0 698 292 189 0 chr12 103805261 103805542 -39980913 - MER102b DNA MER1_type -4 337 4 1046 252 55 94 chr12 103805728 103806259 -39980196 - MLT1J LTR MaLR -1 510 1 274 167 0 0 chr12 103806595 103806643 -39979812 - MER5B DNA MER1_type -3 175 128 206 270 32 16 chr12 103806669 103806732 -39979723 - MIR SINE MIR -151 111 48 241 253 172 0 chr12 103807126 103807213 -39979242 - MIR SINE MIR -55 207 106 416 286 136 15 chr12 103807739 103807938 -39978517 + MIR SINE MIR 34 256 -6 208 302 0 0 chr12 103808237 103808280 -39978175 + MIR SINE MIR 42 84 -124 230 243 135 14 chr12 103809212 103809286 -39977169 + L3 LINE CR1 448 530 -1047 234 289 215 16 chr12 103809309 103809430 -39977025 - L2 LINE L2 -1 3312 3168 301 263 79 0 chr12 103809792 103809906 -39976549 - MIR SINE MIR -19 243 121 204 254 109 18 chr12 103809968 103810023 -39976432 + L2 LINE L2 3230 3289 -24 2321 243 171 11 chr12 103810121 103811217 -39975238 + L2 LINE L2 2028 3313 0 29 47 0 0 chr12 103811483 103811526 -39974929 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 103811594 103811622 -39974833 + AT_rich Low_complexity Low_complexity 1 28 0 844 160 8 0 chr12 103811803 103811928 -39974527 - FLAM_A SINE Alu -7 126 1 225 349 0 0 chr12 103812629 103812695 -39973760 + GA-rich Low_complexity Low_complexity 1 66 0 1965 142 3 3 chr12 103813162 103813444 -39973011 + AluJo SINE Alu 1 282 -30 2313 88 7 0 chr12 103813464 103813758 -39972697 + AluSc SINE Alu 1 296 -13 22 35 0 0 chr12 103814984 103815013 -39971442 + AT_rich Low_complexity Low_complexity 1 29 0 1008 159 33 16 chr12 103815507 103815689 -39970766 + L1MC1 LINE L1 6086 6270 -63 700 229 18 41 chr12 103815691 103815861 -39970594 - MIR SINE MIR -95 167 2 1451 107 123 0 chr12 103816790 103817042 -39969413 - L1MA4 LINE L1 -6 6294 6012 2202 138 3 54 chr12 103817305 103817659 -39968796 + MER1B DNA MER1_type 2 337 0 212 294 132 52 chr12 103817841 103817977 -39968478 + L2 LINE L2 3167 3313 0 324 201 80 130 chr12 103818075 103818142 -39968313 + MIR SINE MIR 16 74 -143 1909 147 6 16 chr12 103818142 103818456 -39967999 - AluSx SINE Alu 0 312 2 324 201 80 130 chr12 103818456 103818529 -39967926 + MIR SINE MIR 74 149 -68 211 175 25 0 chr12 103818829 103818869 -39967586 + MIR SINE MIR 114 154 -108 2391 94 3 0 chr12 103818875 103819235 -39967220 - AluSq SINE Alu 0 313 1 802 226 77 109 chr12 103819267 103819643 -39966812 + MLT1G LTR MaLR 227 590 0 255 125 0 0 chr12 103820124 103820164 -39966291 + (TG)n Simple_repeat Simple_repeat 1 40 0 293 154 26 77 chr12 103820208 103820286 -39966169 + MIR SINE MIR 111 184 -78 604 272 78 33 chr12 103820314 103820557 -39965898 - MIR SINE MIR 0 262 9 201 74 0 0 chr12 103820916 103820943 -39965512 + (TTCTC)n Simple_repeat Simple_repeat 2 28 0 1885 145 19 22 chr12 103820976 103821287 -39965168 - AluSx SINE Alu -2 310 1 192 364 15 0 chr12 103821510 103821576 -39964879 + L2 LINE L2 3200 3266 -6 1639 120 4 4 chr12 103821952 103822218 -39964237 + AluSx SINE Alu 49 314 0 246 209 26 126 chr12 103822221 103822364 -39964091 + HAL1b LINE L1 1188 1292 -56 1298 171 0 5 chr12 103822478 103822688 -39963767 - AluJb SINE Alu -19 293 85 1111 152 0 0 chr12 103823913 103824078 -39962377 + AluSg/x SINE Alu 135 299 -13 657 216 82 29 chr12 103824162 103824333 -39962122 + AluJo SINE Alu 126 305 -7 939 178 19 6 chr12 103824368 103824525 -39961930 + FRAM SINE Alu 1 154 -22 409 156 78 107 chr12 103824527 103824545 -39961910 - MIR SINE MIR -62 146 129 1584 170 51 4 chr12 103824545 103824821 -39961634 + AluJb SINE Alu 1 289 -23 409 156 78 107 chr12 103824821 103824951 -39961504 - MIR SINE MIR -79 129 28 785 144 0 0 chr12 103825302 103825413 -39961042 + AluSg/x SINE Alu 194 304 -8 2476 82 0 0 chr12 103825413 103825716 -39960739 + AluSc SINE Alu 1 303 -6 249 219 16 0 chr12 103825735 103825799 -39960656 + MIR SINE MIR 184 248 -14 778 199 54 6 chr12 103826770 103826936 -39959519 + MER5B DNA MER1_type 4 177 -1 570 178 22 0 chr12 103827726 103827816 -39958639 + AluJ/FLAM SINE Alu 2 93 -219 2345 90 0 0 chr12 103827816 103828105 -39958350 + AluSg SINE Alu 1 289 -21 1918 151 0 3 chr12 103828161 103828473 -39957982 + AluSx SINE Alu 1 311 0 499 265 114 0 chr12 103828505 103828637 -39957818 - MIR SINE MIR -109 153 7 29 78 0 0 chr12 103829859 103829923 -39956532 + AT_rich Low_complexity Low_complexity 1 64 0 23 68 0 0 chr12 103830139 103830183 -39956272 + AT_rich Low_complexity Low_complexity 1 44 0 1639 177 3 18 chr12 103830384 103830666 -39955789 + AluJb SINE Alu 1 278 -34 321 100 14 29 chr12 103830701 103830771 -39955684 + (GGGGA)n Simple_repeat Simple_repeat 4 72 0 432 253 140 29 chr12 103830777 103831287 -39955168 + L1ME4a LINE L1 5496 6119 -2 522 268 136 10 chr12 103831320 103831518 -39954937 + L1ME LINE L1 5583 5805 -316 1058 249 20 69 chr12 103831686 103832032 -39954423 + L2 LINE L2 2198 2526 -788 468 209 156 52 chr12 103832030 103832241 -39954214 + L2 LINE L2 3081 3313 0 * 1974 135 3 41 chr12 103832544 103832862 -39953593 + AluJb SINE Alu 1 306 -6 1458 139 50 76 chr12 103833212 103833515 -39952940 + AluJo SINE Alu 1 295 -17 530 198 0 0 chr12 103833545 103833646 -39952809 + L1MC4a LINE L1 7236 7336 -472 815 139 0 0 chr12 103833653 103833768 -39952687 + AluJb SINE Alu 12 126 -186 1670 196 100 48 chr12 103833780 103834239 -39952216 + L1MD3 LINE L1 7501 7983 -12 253 207 183 0 chr12 103835180 103835262 -39951193 + L1ME4a LINE L1 5588 5684 -437 216 0 0 0 chr12 103835348 103835372 -39951083 + (TA)n Simple_repeat Simple_repeat 2 25 0 1132 207 0 31 chr12 103835375 103835597 -39950858 + AluJo SINE Alu 85 299 -13 660 211 195 35 chr12 103835600 103835793 -39950662 + L1ME4a LINE L1 5683 5844 -277 1656 181 10 14 chr12 103835793 103836086 -39950369 + AluJo SINE Alu 1 292 -20 660 211 195 35 chr12 103836086 103836210 -39950245 + L1ME4a LINE L1 5844 6051 -70 2021 114 7 0 chr12 103836311 103836632 -39949823 + AluSg SINE Alu 1 323 0 2250 119 7 0 chr12 103836670 103836980 -39949475 + AluSx SINE Alu 1 312 0 739 217 0 0 chr12 103837114 103837234 -39949221 + FLAM_C SINE Alu 1 120 -13 22 35 0 0 chr12 103837623 103837652 -39948803 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 103837999 103838029 -39948426 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 103838173 103838196 -39948259 + AT_rich Low_complexity Low_complexity 1 23 0 978 113 14 0 chr12 103838656 103838797 -39947658 - AluJb SINE Alu -169 143 1 908 183 187 72 chr12 103839680 103839785 -39946670 + AluJb SINE Alu 2 94 -208 2256 96 0 10 chr12 103839785 103840086 -39946369 - AluY SINE Alu -13 298 1 908 183 187 72 chr12 103840086 103840242 -39946213 + AluJb SINE Alu 94 293 -9 1645 162 52 0 chr12 103840630 103840783 -39945672 - AluJo SINE Alu -27 285 111 288 0 0 0 chr12 103840783 103840815 -39945640 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1645 162 52 0 chr12 103840815 103840932 -39945523 - AluJo SINE Alu -201 111 1 187 248 238 19 chr12 103841457 103841562 -39944893 + L2 LINE L2 3138 3265 -7 226 388 114 20 chr12 103841885 103842086 -39944369 + L2 LINE L2 3020 3239 -33 2290 129 0 0 chr12 103842749 103843060 -39943395 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr12 103843067 103843100 -39943355 + (TA)n Simple_repeat Simple_repeat 1 33 0 1747 141 48 0 chr12 103843788 103844082 -39942373 - AluSx SINE Alu 0 307 1 3754 106 4 53 chr12 103844198 103844898 -39941557 - SVA Other Other 0 1386 721 307 175 18 0 chr12 103845230 103845287 -39941168 - AluJ/FLAM SINE Alu -242 60 3 2280 78 0 0 chr12 103845467 103845785 -39940670 + AluSp SINE Alu 1 318 0 1254 209 25 11 chr12 103846057 103846339 -39940116 + AluSq SINE Alu 1 286 -27 801 141 0 31 chr12 103846506 103846634 -39939821 - FLAM_C SINE Alu -7 136 13 343 295 145 26 chr12 103846659 103846893 -39939562 + L2 LINE L2 3050 3311 -2 2013 154 3 0 chr12 103847775 103848086 -39938369 - AluJb SINE Alu 0 312 1 1508 246 39 51 chr12 103848750 103848772 -39937683 + MLT1D LTR MaLR 3 24 -481 2341 160 70 8 chr12 103848772 103848978 -39937477 - MSTB LTR MaLR 0 426 234 2305 105 0 0 chr12 103848978 103849282 -39937173 - AluSq SINE Alu -9 304 1 2341 160 70 8 chr12 103849282 103849476 -39936979 - MSTB LTR MaLR -192 234 1 1508 246 39 51 chr12 103849476 103849962 -39936493 + MLT1D LTR MaLR 24 505 0 596 305 20 52 chr12 103850566 103850815 -39935640 - L2 LINE L2 -2 3270 3030 2156 118 0 0 chr12 103851060 103851339 -39935116 - AluSg SINE Alu -31 279 1 3282 183 12 17 chr12 103851666 103852316 -39934139 - MER82 DNA MER2_type 0 653 7 545 294 160 11 chr12 103852577 103852852 -39933603 - L2 LINE L2 0 3313 2998 695 255 0 7 chr12 103854786 103854931 -39931524 + MER5B DNA MER1_type 1 144 -34 265 361 89 47 chr12 103855138 103855203 -39931252 - L2 LINE L2 -36 3236 3175 1705 164 52 25 chr12 103855203 103855568 -39930887 + THE1C LTR MaLR 1 375 0 265 361 89 47 chr12 103855568 103855906 -39930549 - L2 LINE L2 -97 3175 2816 257 256 109 36 chr12 103855963 103856100 -39930355 - Charlie7 DNA MER1_type -17 2595 2449 209 359 39 0 chr12 103856278 103856356 -39930099 - MIR SINE MIR -76 132 52 2331 89 7 0 chr12 103856662 103856953 -39929502 - AluSc SINE Alu -16 293 1 364 298 106 43 chr12 103856978 103857166 -39929289 + MIR SINE MIR 4 203 -59 26 0 0 0 chr12 103857282 103857308 -39929147 + AT_rich Low_complexity Low_complexity 1 26 0 238 285 56 73 chr12 103857368 103857547 -39928908 - MIR SINE MIR 0 262 87 7982 175 32 34 chr12 103857669 103860332 -39926123 + L1MB1 LINE L1 3496 6167 -1 277 238 48 29 chr12 103860466 103860571 -39925884 - MER103 DNA DNA -54 112 6 7513 210 37 19 chr12 103862387 103864227 -39922228 - L1MB7 LINE L1 -2 6662 4719 279 0 0 0 chr12 103864227 103864258 -39922197 + (TG)n Simple_repeat Simple_repeat 2 32 0 7513 210 37 19 chr12 103864258 103865474 -39920981 - L1MB7 LINE L1 -1945 4719 3527 474 238 62 31 chr12 103865484 103865711 -39920744 - L1MB7 LINE L1 -4123 2523 2290 28 48 0 0 chr12 103865724 103865766 -39920689 + AT_rich Low_complexity Low_complexity 1 42 0 5889 228 52 21 chr12 103865795 103867818 -39918637 - L1MB7 LINE L1 -4481 2165 69 207 244 205 0 chr12 103867824 103867902 -39918553 - L2 LINE L2 -1056 2258 2165 1843 175 40 70 chr12 103869885 103870330 -39916125 - MSTB1 LTR MaLR 0 432 1 2357 97 0 0 chr12 103870501 103870801 -39915654 + AluSx SINE Alu 1 300 -12 238 326 38 91 chr12 103871975 103872107 -39914348 + L2 LINE L2 3147 3271 -1 338 293 19 9 chr12 103872114 103872220 -39914235 + GA-rich Low_complexity Low_complexity 3 109 0 2356 93 51 23 chr12 103872598 103872952 -39913503 + THE1B LTR MaLR 1 364 0 542 161 0 0 chr12 103873102 103873195 -39913260 + MLT1C LTR MaLR 207 299 -168 * 615 187 2 9 chr12 103873182 103873318 -39913137 + MLT1B LTR MaLR 243 390 0 437 309 117 42 chr12 103874076 103874825 -39911630 + L1ME LINE L1 4974 5781 -381 215 289 167 11 chr12 103875324 103875414 -39911041 + L2 LINE L2 3169 3272 0 594 276 92 21 chr12 103875953 103876098 -39910357 + MIR SINE MIR 7 177 -85 1631 159 0 0 chr12 103876098 103876337 -39910118 + AluJb SINE Alu 60 298 -14 594 276 92 21 chr12 103876337 103876430 -39910025 + MIR SINE MIR 177 262 0 244 288 129 38 chr12 103876428 103876560 -39909895 - MIR SINE MIR -15 247 104 * 313 318 27 9 chr12 103877405 103877515 -39908940 + MIR SINE MIR 22 133 -75 1261 163 92 102 chr12 103877573 103877647 -39908808 - MLT1B LTR MaLR -1 389 316 2021 144 0 3 chr12 103877647 103877938 -39908517 + AluSx SINE Alu 1 290 -22 1261 163 92 102 chr12 103877938 103878256 -39908199 - MLT1B LTR MaLR -74 316 1 1314 235 25 77 chr12 103878264 103878830 -39907625 - L2 LINE L2 -46 3267 2745 1356 254 187 50 chr12 103878830 103878881 -39907574 - L2 LINE L2 -785 2529 2486 2256 151 78 5 chr12 103878881 103879278 -39907177 - MSTB LTR MaLR 0 426 1 1356 254 187 50 chr12 103879278 103879408 -39907047 - L2 LINE L2 -828 2486 2375 1881 122 0 11 chr12 103879408 103879671 -39906784 + AluSx SINE Alu 40 299 -13 1356 254 187 50 chr12 103879671 103880174 -39906281 - L2 LINE L2 -939 2375 1750 278 250 0 98 chr12 103880199 103880311 -39906144 - MER102a DNA MER1_type -9 321 221 282 283 138 106 chr12 103880645 103880928 -39905527 - L2 LINE L2 -13 3259 2968 821 275 64 8 chr12 103881024 103881260 -39905195 + MIR SINE MIR 14 262 0 428 258 25 8 chr12 103883841 103883961 -39902494 + MIR SINE MIR 56 177 -85 433 241 46 0 chr12 103884729 103884837 -39901618 - MIR SINE MIR -58 204 92 235 286 0 13 chr12 103884847 103884924 -39901531 + MIR SINE MIR 158 233 -29 279 226 0 0 chr12 103885031 103885084 -39901371 - MER45 DNA AcHobo 0 1581 1529 * 647 289 72 59 chr12 103885082 103885253 -39901202 - MER45C DNA AcHobo -322 631 453 2321 111 19 35 chr12 103885253 103885623 -39900832 - THE1B LTR MaLR 0 364 1 647 289 72 59 chr12 103885623 103885755 -39900700 - MER45C DNA AcHobo -500 453 324 892 204 119 34 chr12 103885788 103886057 -39900398 - MER45C DNA AcHobo -607 346 55 1533 114 74 34 chr12 103886102 103886244 -39900211 + L1MA9 LINE L1 6004 6139 -173 408 40 0 0 chr12 103886244 103886294 -39900161 + (CA)n Simple_repeat Simple_repeat 1 50 0 1533 114 74 34 chr12 103886294 103886448 -39900007 + L1MA9 LINE L1 6139 6312 0 1949 162 0 7 chr12 103887503 103887812 -39898643 - AluJo SINE Alu -5 307 1 542 170 16 54 chr12 103888086 103888229 -39898226 + MIR SINE MIR 43 178 -66 226 233 171 85 chr12 103888302 103888431 -39898024 + MIR SINE MIR 1 140 -122 61 45 0 0 chr12 103889171 103889260 -39897195 + AT_rich Low_complexity Low_complexity 1 89 0 600 309 36 32 chr12 103889330 103889550 -39896905 + L3 LINE CR1 1329 1549 -28 1021 222 140 57 chr12 103889558 103889964 -39896491 - MLT1K LTR MaLR -6 582 143 636 297 61 22 chr12 103890504 103890733 -39895722 - MIR SINE MIR -18 244 7 326 308 99 28 chr12 103891915 103892126 -39894329 + L2 LINE L2 2129 2354 -960 252 311 83 93 chr12 103892130 103892419 -39894036 - L2 LINE L2 -1 3271 2986 209 276 17 0 chr12 103893488 103893546 -39892909 - MIR SINE MIR -5 257 199 1296 200 71 49 chr12 103893547 103893912 -39892543 - MLT2C1 LTR ERVL 0 397 25 386 310 43 27 chr12 103893983 103894170 -39892285 - MIR SINE MIR -70 192 3 4977 131 43 0 chr12 103895092 103896060 -39890395 - L1PB4 LINE L1 -1 6155 5149 442 192 177 15 chr12 103896842 103896972 -39889483 + MIR SINE MIR 112 262 0 204 40 0 0 chr12 103898290 103898315 -39888140 + (CCG)n Simple_repeat Simple_repeat 2 26 0 252 214 0 34 chr12 103898321 103898430 -39888025 + G-rich Low_complexity Low_complexity 1 105 0 205 284 179 45 chr12 103899716 103899850 -39886605 + L3b LINE CR1 1317 1468 -115 2077 133 7 0 chr12 103903654 103903956 -39882499 + AluSq SINE Alu 1 304 -9 867 311 70 30 chr12 103904295 103905005 -39881450 - L2 LINE L2 0 3313 2527 300 225 56 22 chr12 103905016 103905105 -39881350 - L1ME4a LINE L1 -41 6080 5989 947 237 44 44 chr12 103905133 103905397 -39881058 - HAL1b LINE L1 -2 1346 1080 1866 140 7 18 chr12 103905397 103905682 -39880773 + AluSx SINE Alu 11 292 -20 947 237 44 44 chr12 103905682 103905827 -39880628 - HAL1b LINE L1 -267 1081 937 301 98 98 16 chr12 103905828 103905889 -39880566 - MER69 DNA AcHobo 0 2526 2461 541 225 14 56 chr12 103905894 103906036 -39880419 - MER69 DNA AcHobo -1088 138 3 1495 242 108 33 chr12 103906039 103906386 -39880069 - HAL1b LINE L1 -406 942 622 240 35 0 0 chr12 103906386 103906415 -39880040 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1495 242 108 33 chr12 103906415 103906707 -39879748 - HAL1b LINE L1 -726 622 255 324 269 34 27 chr12 103906712 103906861 -39879594 - HAL1b LINE L1 -1128 220 71 226 177 16 16 chr12 103907246 103907308 -39879147 + CT-rich Low_complexity Low_complexity 4 65 0 1041 245 89 55 chr12 103908162 103908470 -39877985 - L2 LINE L2 -765 2549 2224 2856 13 0 0 chr12 103908470 103908782 -39877673 - AluYb8 SINE Alu -6 312 1 1041 245 89 55 chr12 103908782 103908856 -39877599 - L2 LINE L2 -1090 2224 2154 238 271 29 0 chr12 103909460 103909530 -39876925 - MIR SINE MIR 0 262 191 25 0 0 0 chr12 103912277 103912302 -39874153 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr12 103912476 103912499 -39873956 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2622 48 0 6 chr12 103912502 103912815 -39873640 - AluY SINE Alu 0 311 1 557 246 65 55 chr12 103913866 103914082 -39872373 + MIR SINE MIR 45 262 0 244 318 0 0 chr12 103914237 103914300 -39872155 + MER91 DNA MER1_type 1 63 -77 194 352 38 38 chr12 103914734 103914839 -39871616 - L2 LINE L2 -52 3220 3116 500 151 0 0 chr12 103914894 103914998 -39871457 - AluSg/x SINE Alu 0 314 211 190 325 50 50 chr12 103915313 103915393 -39871062 + L2 LINE L2 3143 3222 -50 207 333 25 12 chr12 103916700 103916781 -39869674 - L2 LINE L2 -4 3268 3187 291 337 36 68 chr12 103916873 103917122 -39869333 - L2 LINE L2 -181 3091 2851 240 303 0 13 chr12 103917154 103917230 -39869225 - L2 LINE L2 -556 2758 2684 301 332 157 32 chr12 103917829 103918205 -39868250 - L2 LINE L2 -434 2880 2458 313 354 26 31 chr12 103918861 103919056 -39867399 - L3 LINE CR1 -1101 476 283 213 280 0 0 chr12 103919932 103919982 -39866473 - L2 LINE L2 0 3272 3223 1619 131 40 131 chr12 103920428 103920747 -39865708 - MLT1B LTR MaLR 0 390 118 2071 149 0 0 chr12 103920747 103921043 -39865412 - AluSx SINE Alu -16 296 1 1619 131 40 131 chr12 103921043 103921150 -39865305 - MLT1B LTR MaLR -272 118 3 305 311 19 10 chr12 103921762 103921865 -39864590 + MIR SINE MIR 40 143 -65 444 258 19 75 chr12 103923071 103923230 -39863225 - MIR SINE MIR 0 262 113 225 196 0 0 chr12 103923572 103923618 -39862837 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 349 287 41 16 chr12 103924029 103924151 -39862304 - L2 LINE L2 0 3313 3189 284 268 89 48 chr12 103924281 103924449 -39862006 + MIR SINE MIR 84 258 -4 2280 87 3 7 chr12 103925421 103925720 -39860735 - AluY SINE Alu -12 299 2 370 361 82 0 chr12 103926833 103927016 -39859439 - L2 LINE L2 -557 2757 2560 203 140 0 120 chr12 103927062 103927112 -39859343 + L2 LINE L2 2893 2936 -377 1494 167 78 33 chr12 103927143 103927493 -39858962 + MLT1A1 LTR MaLR 6 365 0 1086 281 12 60 chr12 103927493 103927895 -39858560 + L2 LINE L2 2931 3313 0 1070 230 47 16 chr12 103928562 103928924 -39857531 - MLT2D LTR ERVL -8 389 4 1245 103 47 23 chr12 103928927 103929141 -39857314 + L1MA4A LINE L1 6082 6300 -3 927 278 12 24 chr12 103930831 103931086 -39855369 - MIR SINE MIR 0 262 11 250 329 161 13 chr12 103931438 103931593 -39854862 + MIR3 SINE MIR 20 197 -11 1393 108 33 0 chr12 103932408 103932620 -39853835 - L1PA10 LINE L1 0 6168 5950 633 98 0 0 chr12 103932620 103932712 -39853743 + L1PA10 LINE L1 5850 5941 -227 1737 168 13 7 chr12 103934660 103934963 -39851492 + AluJb SINE Alu 1 305 -7 255 61 0 0 chr12 103935624 103935657 -39850798 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 211 205 77 123 chr12 103935779 103935974 -39850481 + L2 LINE L2 1505 1690 -1624 191 380 81 46 chr12 103935963 103936247 -39850208 + L2 LINE L2 2892 3185 -87 * 514 263 75 43 chr12 103936787 103936973 -39849482 - MIR SINE MIR -58 204 13 209 238 60 95 chr12 103937706 103937790 -39848665 - L2 LINE L2 -1 3312 3232 2822 13 0 0 chr12 103938115 103938422 -39848033 - AluYb8 SINE Alu -11 307 1 181 213 43 21 chr12 103938753 103938800 -39847655 + MIR SINE MIR 100 147 -115 561 312 104 40 chr12 103939427 103939754 -39846701 - L2 LINE L2 -1 3312 2965 282 266 208 29 chr12 103940551 103940724 -39845731 + MIR SINE MIR 20 223 -39 361 281 12 0 chr12 103941020 103941102 -39845353 - L2 LINE L2 0 3313 3231 2305 99 0 0 chr12 103941249 103941542 -39844913 - AluSc SINE Alu -2 307 15 241 286 0 57 chr12 103941608 103941678 -39844777 - MIR SINE MIR -13 249 184 365 350 109 24 chr12 103941835 103942166 -39844289 + L2 LINE L2 2914 3272 0 2524 68 0 0 chr12 103942533 103942840 -39843615 + AluY SINE Alu 1 307 -4 2379 92 0 0 chr12 103944261 103944556 -39841899 + AluSx SINE Alu 1 295 -17 1251 126 0 6 chr12 103944566 103944740 -39841715 + AluSg/x SINE Alu 127 299 -13 3216 184 21 44 chr12 103945327 103945404 -39841051 + L1MA10 LINE L1 5598 5675 -659 2241 117 0 0 chr12 103945404 103945702 -39840753 + AluSx SINE Alu 1 298 -14 3216 184 21 44 chr12 103945702 103946378 -39840077 + L1MA10 LINE L1 5675 6334 0 250 313 12 25 chr12 103946536 103946616 -39839839 - L2 LINE L2 -265 3007 2929 312 222 0 0 chr12 103947263 103947335 -39839120 + (TATG)n Simple_repeat Simple_repeat 1 72 0 24 32 0 0 chr12 103947556 103947587 -39838868 + AT_rich Low_complexity Low_complexity 1 31 0 191 318 19 28 chr12 103947855 103947962 -39838493 - MIR SINE MIR 0 262 157 351 276 164 26 chr12 103947985 103948137 -39838318 + MIR SINE MIR 20 192 -70 1999 249 48 29 chr12 103948223 103948813 -39837642 - L3 LINE CR1 -645 932 332 710 249 54 29 chr12 103948968 103949209 -39837246 - MIR SINE MIR -14 248 2 2126 175 40 37 chr12 103949719 103950175 -39836280 - MSTB2 LTR MaLR 0 457 1 2428 241 22 18 chr12 103950706 103951424 -39835031 - L1ME1 LINE L1 -5 6161 5441 297 140 0 0 chr12 103953897 103953954 -39832501 + (CATA)n Simple_repeat Simple_repeat 2 58 0 2361 92 0 19 chr12 103955936 103956250 -39830205 - AluY SINE Alu -3 308 1 440 278 71 38 chr12 103957176 103957385 -39829070 + MIR SINE MIR 15 230 -32 197 159 23 0 chr12 103957547 103957591 -39828864 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 351 286 94 14 chr12 103957943 103958096 -39828359 - MIR SINE MIR -29 233 66 270 0 0 0 chr12 103958172 103958202 -39828253 + (TAA)n Simple_repeat Simple_repeat 2 31 0 231 284 46 55 chr12 103959039 103959148 -39827307 + L3b LINE CR1 1121 1228 -355 2355 126 5 11 chr12 103959342 103959716 -39826739 + L1PA16 LINE L1 5794 6165 -1 368 328 97 11 chr12 103959976 103960162 -39826293 + MIR SINE MIR 21 222 -40 508 353 57 35 chr12 103960349 103960805 -39825650 - L2 LINE L2 0 3313 2848 1305 140 0 15 chr12 103961324 103961524 -39824931 + AluSg/x SINE Alu 77 273 -39 2420 82 0 0 chr12 103962053 103962359 -39824096 + AluY SINE Alu 1 306 -5 210 308 15 0 chr12 103962395 103962460 -39823995 + GA-rich Low_complexity Low_complexity 1 66 0 255 216 80 11 chr12 103968116 103968252 -39818203 - MIR SINE MIR -59 203 20 22 35 0 0 chr12 103968284 103968313 -39818142 + AT_rich Low_complexity Low_complexity 1 29 0 312 318 91 7 chr12 103968628 103968782 -39817673 + MIR SINE MIR 42 208 -54 1985 123 0 7 chr12 103969508 103969800 -39816655 + AluSx SINE Alu 1 290 -22 207 194 0 0 chr12 103970971 103971007 -39815448 + CT-rich Low_complexity Low_complexity 1 36 0 388 207 275 36 chr12 103971113 103971306 -39815149 - MLT1K LTR MaLR -2 586 348 1961 150 3 0 chr12 103971392 103971685 -39814770 + AluSx SINE Alu 1 294 -18 213 119 0 0 chr12 103971774 103971816 -39814639 + (GA)n Simple_repeat Simple_repeat 1 42 0 333 328 55 0 chr12 103972123 103972251 -39814204 + MIR SINE MIR 57 191 -71 409 308 15 0 chr12 103972973 103973103 -39813352 - MIR SINE MIR -123 139 8 838 327 86 19 chr12 103973560 103973979 -39812476 - L3 LINE CR1 -3 1574 1128 323 338 40 76 chr12 103974123 103974348 -39812107 - L3 LINE CR1 -790 787 571 564 140 0 0 chr12 103975069 103975162 -39811293 + (GGGA)n Simple_repeat Simple_repeat 4 96 0 191 213 43 0 chr12 103976596 103976643 -39809812 + L2 LINE L2 3262 3310 -3 1952 129 22 0 chr12 103976708 103977012 -39809443 + AluSx SINE Alu 1 310 0 1393 254 275 33 chr12 103977062 103978194 -39808261 - L2 LINE L2 -245 3068 1616 197 250 0 78 chr12 103979042 103979106 -39807349 - MIR SINE MIR -83 179 121 2285 105 3 6 chr12 103979120 103979433 -39807022 + AluSx SINE Alu 1 312 0 1994 125 3 61 chr12 103979445 103979772 -39806683 + AluSx SINE Alu 1 308 -4 1682 177 13 29 chr12 103979783 103980094 -39806361 + AluJo SINE Alu 1 306 -6 21 0 0 0 chr12 103980428 103980449 -39806006 + AT_rich Low_complexity Low_complexity 1 21 0 1727 154 0 15 chr12 103980450 103980722 -39805733 + AluSx SINE Alu 28 295 -17 1737 152 22 82 chr12 103980803 103981171 -39805284 - MER7A DNA MER2_type 0 346 3 5513 133 31 13 chr12 103982687 103983591 -39802864 - MER49 LTR ERV1 0 923 4 350 189 44 56 chr12 103983711 103983801 -39802654 + MIR3 SINE MIR 69 157 -51 186 133 0 0 chr12 103985770 103985800 -39800655 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr12 103986955 103987007 -39799448 + AT_rich Low_complexity Low_complexity 1 52 0 1965 153 0 3 chr12 103987127 103987421 -39799034 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr12 103988006 103988028 -39798427 + AT_rich Low_complexity Low_complexity 1 22 0 294 87 0 0 chr12 103990379 103990425 -39796030 + L1MA4A LINE L1 6233 6278 -25 333 0 0 0 chr12 103990668 103990705 -39795750 + (A)n Simple_repeat Simple_repeat 1 37 0 277 41 82 0 chr12 103992730 103992779 -39793676 + (TTTAG)n Simple_repeat Simple_repeat 3 55 0 23 33 0 0 chr12 103994590 103994620 -39791835 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 103994796 103994821 -39791634 + AT_rich Low_complexity Low_complexity 1 25 0 2181 104 10 7 chr12 103994879 103995176 -39791279 + AluSx SINE Alu 1 298 -14 762 243 0 11 chr12 103995850 103996030 -39790425 - MIR SINE MIR -33 175 1 245 385 0 0 chr12 103996031 103996114 -39790341 + MIR3 SINE MIR 111 193 -15 304 305 24 12 chr12 103997145 103997227 -39789228 - L2 LINE L2 -104 3168 3086 706 228 89 0 chr12 103997368 103997526 -39788929 - MIR SINE MIR -57 205 34 218 0 94 0 chr12 103997593 103997625 -39788830 + T-rich Low_complexity Low_complexity 2 36 0 2613 70 0 0 chr12 103998877 103999190 -39787265 - AluSq SINE Alu 0 313 1 1585 151 44 0 chr12 103999642 103999960 -39786495 - L1MA6 LINE L1 -830 5316 4985 * 5432 123 12 43 chr12 103999959 104000980 -39785475 + L1MA6 LINE L1 5302 6290 -10 964 210 6 0 chr12 104001578 104001745 -39784710 + FAM SINE Alu 1 168 -7 2254 77 49 0 chr12 104001949 104002235 -39784220 - AluSg SINE Alu -10 300 1 752 178 0 8 chr12 104002677 104002806 -39783649 + FLAM_C SINE Alu 1 128 -5 441 265 156 25 chr12 104002820 104003042 -39783413 - MIR SINE MIR 0 262 7 967 266 51 43 chr12 104003216 104003793 -39782662 - L1ME4a LINE L1 -11 6110 5524 2083 127 26 13 chr12 104003932 104004239 -39782216 - AluSx SINE Alu -1 311 1 288 204 19 0 chr12 104004566 104004620 -39781835 + MER5A DNA MER1_type 1 55 -134 324 277 254 8 chr12 104004839 104004969 -39781486 - L3b LINE CR1 -99 1484 1323 209 189 0 0 chr12 104005020 104005057 -39781398 + T-rich Low_complexity Low_complexity 1 37 0 883 83 0 17 chr12 104005057 104005177 -39781278 - AluSq/x SINE Alu -194 118 1 229 163 0 0 chr12 104005341 104005384 -39781071 - AluSx SINE Alu -1 299 257 1801 126 4 4 chr12 104005384 104005662 -39780793 - AluSx SINE Alu -34 278 1 348 253 13 0 chr12 104005751 104005830 -39780625 + MER116 DNA Mariner 1 80 0 190 316 112 74 chr12 104005835 104006050 -39780405 - L2 LINE L2 -50 3222 3000 2105 131 0 0 chr12 104007800 104008112 -39778343 - AluSx SINE Alu 0 312 1 349 328 196 20 chr12 104008875 104009726 -39776729 + L2 LINE L2 1981 3056 -216 476 223 149 0 chr12 104009896 104010044 -39776411 - MER117 DNA MER1_type -27 170 1 286 60 20 20 chr12 104011936 104011986 -39774469 + (TG)n Simple_repeat Simple_repeat 2 51 0 245 267 0 0 chr12 104012314 104012374 -39774081 + (CATA)n Simple_repeat Simple_repeat 3 62 0 1613 74 5 0 chr12 104014902 104015105 -39771350 - AluSx SINE Alu -108 204 1 1652 176 3 10 chr12 104016082 104016383 -39770072 - AluJo SINE Alu -5 307 9 1703 154 22 26 chr12 104017548 104017860 -39768595 + AluJb SINE Alu 1 311 -1 260 356 104 0 chr12 104019005 104019140 -39767315 + MIR SINE MIR 20 168 -94 2230 86 0 7 chr12 104019544 104019845 -39766610 + AluSx SINE Alu 1 299 -13 2351 149 0 30 chr12 104020384 104020548 -39765907 - MLT1B LTR MaLR 0 390 223 2841 87 0 6 chr12 104020548 104020914 -39765541 + THE1B LTR MaLR 1 364 0 2351 149 0 30 chr12 104020914 104021151 -39765304 - MLT1B LTR MaLR -167 223 1 1707 156 0 33 chr12 104021521 104021822 -39764633 + AluJb SINE Alu 1 291 -21 1478 190 17 14 chr12 104021831 104022121 -39764334 + AluJo SINE Alu 1 291 -21 261 0 0 0 chr12 104024105 104024134 -39762321 + (A)n Simple_repeat Simple_repeat 1 29 0 2458 53 0 0 chr12 104024547 104024847 -39761608 - AluY SINE Alu -11 300 1 234 0 0 0 chr12 104024847 104024873 -39761582 + (T)n Simple_repeat Simple_repeat 1 26 0 1624 147 29 46 chr12 104026180 104026487 -39759968 + AluJb SINE Alu 1 302 -10 562 277 126 22 chr12 104027306 104027405 -39759050 + MIR SINE MIR 2 89 -173 1762 109 3 118 chr12 104027405 104027736 -39758719 + AluSx SINE Alu 1 293 -19 2000 131 3 0 chr12 104027736 104028033 -39758422 + AluSx SINE Alu 1 298 -14 562 277 126 22 chr12 104028033 104028163 -39758292 + MIR SINE MIR 88 256 -6 235 333 26 13 chr12 104028355 104028433 -39758022 - L2 LINE L2 -86 3186 3108 2102 114 0 3 chr12 104028772 104029069 -39757386 + AluSx SINE Alu 1 296 -16 354 268 65 14 chr12 104029623 104029761 -39756694 + L1ME4a LINE L1 5942 6086 -35 462 240 99 128 chr12 104030391 104030703 -39755752 - L2 LINE L2 -5 3267 2965 533 299 117 14 chr12 104032113 104032327 -39754128 + MIR SINE MIR 3 238 -24 1227 171 0 5 chr12 104032818 104033028 -39753427 + AluJb SINE Alu 85 293 -19 229 263 105 0 chr12 104033142 104033237 -39753218 - HAL1b LINE L1 -56 1292 1188 197 32 0 32 chr12 104033288 104033319 -39753136 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1563 120 4 4 chr12 104033321 104033554 -39752901 - AluSx SINE Alu -31 281 49 200 364 15 0 chr12 104033930 104033996 -39752459 - L2 LINE L2 -6 3266 3200 1824 145 19 19 chr12 104034219 104034529 -39751926 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr12 104034562 104034589 -39751866 + (GAGAA)n Simple_repeat Simple_repeat 2 28 0 641 272 78 33 chr12 104034948 104035191 -39751264 + MIR SINE MIR 9 262 0 302 154 26 77 chr12 104035219 104035297 -39751158 - MIR SINE MIR -78 184 111 255 125 0 0 chr12 104035341 104035381 -39751074 + (CA)n Simple_repeat Simple_repeat 1 40 0 838 210 88 120 chr12 104035863 104036239 -39750216 - MLT1G LTR MaLR 0 590 227 2242 90 0 3 chr12 104036271 104036572 -39749883 + AluSq SINE Alu 1 300 -13 1545 111 8 60 chr12 104036575 104036827 -39749628 - AluSx SINE Alu -31 281 43 2819 81 20 0 chr12 104036827 104037184 -39749271 - THE1B LTR MaLR 0 364 1 366 106 0 0 chr12 104037184 104037231 -39749224 - AluSx SINE Alu -254 47 1 * 640 286 90 16 chr12 104037231 104037419 -39749036 - MLT1G LTR MaLR -312 243 42 540 300 75 9 chr12 104037496 104037723 -39748732 + MIR SINE MIR 16 257 -5 253 206 0 110 chr12 104037778 104037851 -39748604 - L2 LINE L2 0 3272 3208 230 252 175 39 chr12 104038719 104038822 -39747633 - L3 LINE CR1 -1 1576 1460 2100 119 7 0 chr12 104039574 104039876 -39746579 + AluSp SINE Alu 1 304 -9 3455 119 38 46 chr12 104040675 104040743 -39745712 - MER4A LTR ERV1 0 600 533 2270 90 0 3 chr12 104040743 104041044 -39745411 + AluSg SINE Alu 1 300 -10 3455 119 38 46 chr12 104041044 104041580 -39744875 - MER4A LTR ERV1 -67 533 1 299 330 50 18 chr12 104042881 104043099 -39743356 + L2 LINE L2 661 885 -2429 909 305 56 5 chr12 104043124 104043518 -39742937 + L2 LINE L2 2228 2641 -673 586 272 171 59 chr12 104043608 104043893 -39742562 + L2 LINE L2 2891 3229 -84 2227 63 0 30 chr12 104043893 104044194 -39742261 + AluY SINE Alu 1 292 -19 586 272 171 59 chr12 104044194 104044283 -39742172 + L2 LINE L2 3229 3307 -6 6034 131 16 29 chr12 104045102 104046435 -39740020 - L1MA4 LINE L1 -47 6253 4938 272 321 37 18 chr12 104046442 104046551 -39739904 + L2 LINE L2 2927 3037 -235 885 271 162 42 chr12 104046560 104047125 -39739330 - L2 LINE L2 -3 3310 2684 309 248 182 42 chr12 104047097 104047311 -39739144 + L2 LINE L2 3027 3270 -2 * 216 0 0 0 chr12 104047900 104047924 -39738531 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 104048246 104048267 -39738188 + AT_rich Low_complexity Low_complexity 1 21 0 722 292 189 0 chr12 104051665 104051946 -39734509 - MER102b DNA MER1_type -4 337 4 897 254 55 94 chr12 104052132 104052663 -39733792 - MLT1J LTR MaLR -1 510 1 281 167 0 0 chr12 104052999 104053047 -39733408 - MER5B DNA MER1_type -3 175 128 211 270 32 16 chr12 104053073 104053136 -39733319 - MIR SINE MIR -151 111 48 256 253 172 0 chr12 104053530 104053617 -39732838 - MIR SINE MIR -55 207 106 453 290 130 15 chr12 104054143 104054343 -39732112 + MIR SINE MIR 34 256 -6 209 302 0 0 chr12 104054642 104054685 -39731770 + MIR SINE MIR 42 84 -124 231 243 135 14 chr12 104055617 104055691 -39730764 + L3 LINE CR1 448 530 -1047 235 289 215 16 chr12 104055714 104055835 -39730620 - L2 LINE L2 -1 3312 3168 303 263 79 0 chr12 104056197 104056311 -39730144 - MIR SINE MIR -19 243 121 204 254 109 18 chr12 104056373 104056428 -39730027 + L2 LINE L2 3230 3289 -24 2303 245 172 11 chr12 104056526 104057622 -39728833 + L2 LINE L2 2028 3313 0 29 47 0 0 chr12 104057888 104057931 -39728524 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 104057999 104058027 -39728428 + AT_rich Low_complexity Low_complexity 1 28 0 795 160 8 0 chr12 104058208 104058333 -39728122 - FLAM_A SINE Alu -7 126 1 225 349 0 0 chr12 104059034 104059100 -39727355 + GA-rich Low_complexity Low_complexity 1 66 0 1976 142 3 3 chr12 104059567 104059849 -39726606 + AluJo SINE Alu 1 282 -30 2307 88 7 0 chr12 104059869 104060163 -39726292 + AluSc SINE Alu 1 296 -13 22 35 0 0 chr12 104061389 104061418 -39725037 + AT_rich Low_complexity Low_complexity 1 29 0 925 156 34 17 chr12 104061915 104062094 -39724361 + L1MC1 LINE L1 6089 6270 -63 706 229 18 41 chr12 104062096 104062266 -39724189 - MIR SINE MIR -95 167 2 1320 107 123 0 chr12 104063195 104063447 -39723008 - L1MA4 LINE L1 -6 6294 6012 2058 136 3 54 chr12 104063710 104064064 -39722391 + MER1B DNA MER1_type 2 337 0 240 293 105 102 chr12 104064078 104064382 -39722073 + L2 LINE L2 2968 3272 0 335 201 80 130 chr12 104064480 104064547 -39721908 + MIR SINE MIR 16 74 -143 1922 147 6 16 chr12 104064547 104064861 -39721594 - AluSx SINE Alu 0 312 2 335 201 80 130 chr12 104064861 104064934 -39721521 + MIR SINE MIR 74 149 -68 214 175 25 0 chr12 104065234 104065274 -39721181 + MIR SINE MIR 114 154 -108 2446 90 0 0 chr12 104065280 104065641 -39720814 - AluSq SINE Alu 0 313 1 864 145 0 0 chr12 104065736 104065867 -39720588 - AluJb SINE Alu -13 299 169 310 217 211 30 chr12 104066341 104066507 -39719948 + L1 LINE L1 4151 4346 -1800 437 277 136 23 chr12 104068145 104068365 -39718090 + MIR SINE MIR 17 261 -1 477 358 62 59 chr12 104068436 104068858 -39717597 - L2 LINE L2 -6 3266 2844 22 35 0 0 chr12 104069197 104069226 -39717229 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr12 104072109 104072130 -39714325 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2488 59 0 7 chr12 104072313 104072616 -39713839 - AluY SINE Alu -10 301 1 187 284 162 14 chr12 104072798 104072872 -39713583 - L2 LINE L2 -5 3308 3224 24 53 0 0 chr12 104073431 104073469 -39712986 + AT_rich Low_complexity Low_complexity 1 38 0 481 277 35 48 chr12 104073520 104073648 -39712807 + HAL1 LINE L1 109 235 -2272 2068 92 7 14 chr12 104073648 104073952 -39712503 + AluSc SINE Alu 1 302 0 481 277 35 48 chr12 104073952 104074053 -39712402 + HAL1 LINE L1 235 336 -2171 1835 146 7 0 chr12 104074363 104074644 -39711811 - AluJo SINE Alu -27 285 3 2160 123 16 7 chr12 104074768 104075076 -39711379 + AluSx SINE Alu 1 311 -1 1876 246 103 67 chr12 104075159 104075624 -39710831 + HAL1 LINE L1 475 922 -1585 2280 109 0 0 chr12 104075624 104075926 -39710529 + AluSp SINE Alu 1 302 -11 1876 246 103 67 chr12 104075926 104076132 -39710323 + HAL1 LINE L1 922 1119 -1388 2249 102 0 13 chr12 104076132 104076437 -39710018 + AluSg SINE Alu 1 301 -9 1876 246 103 67 chr12 104076437 104076831 -39709624 + HAL1 LINE L1 1119 1580 -927 741 206 86 13 chr12 104077036 104077269 -39709186 + HAL1 LINE L1 2257 2506 -1 414 0 0 0 chr12 104078018 104078064 -39708391 + (TA)n Simple_repeat Simple_repeat 2 47 0 186 43 0 0 chr12 104078443 104078466 -39707989 + (A)n Simple_repeat Simple_repeat 1 23 0 395 278 278 5 chr12 104078707 104078912 -39707543 + MIR SINE MIR 2 262 0 1794 174 3 7 chr12 104080181 104080474 -39705981 + AluJb SINE Alu 1 292 -20 1674 186 13 7 chr12 104080484 104080785 -39705670 + AluJo SINE Alu 1 303 -9 313 387 0 8 chr12 104082420 104082544 -39703911 - MIR3 SINE MIR -81 127 5 756 150 0 24 chr12 104082580 104082707 -39703748 + FLAM_C SINE Alu 5 128 -5 21 36 0 0 chr12 104083092 104083120 -39703335 + AT_rich Low_complexity Low_complexity 1 28 0 2030 133 13 0 chr12 104083126 104083428 -39703027 + AluSx SINE Alu 1 306 -6 306 304 76 11 chr12 104084888 104084980 -39701475 + MIR SINE MIR 12 109 -153 218 221 132 15 chr12 104084980 104085048 -39701407 + MER5C DNA MER1_type 1 76 -248 2235 112 7 0 chr12 104085055 104085351 -39701104 + AluSx SINE Alu 1 298 -14 260 205 361 25 chr12 104085516 104085581 -39700874 + MIR SINE MIR 100 142 -120 213 39 0 0 chr12 104085581 104085607 -39700848 + (TA)n Simple_repeat Simple_repeat 1 26 0 260 205 361 25 chr12 104085607 104085663 -39700792 + MIR SINE MIR 142 262 0 198 320 37 86 chr12 104085875 104086119 -39700336 - L2 LINE L2 -229 3043 2812 199 260 20 0 chr12 104086477 104086527 -39699928 + L2 LINE L2 3261 3311 -2 1002 226 82 78 chr12 104086894 104087430 -39699025 + L1MC4a LINE L1 5616 6153 -1655 1856 140 0 14 chr12 104088242 104088527 -39697928 + AluSx SINE Alu 27 307 -5 768 129 14 43 chr12 104089034 104089174 -39697281 + FLAM_C SINE Alu 1 136 -7 255 204 0 0 chr12 104089535 104089579 -39696876 + L2 LINE L2 3221 3264 -8 2361 76 0 50 chr12 104090440 104090757 -39695698 - AluSp SINE Alu -12 301 1 2449 62 0 0 chr12 104090937 104091229 -39695226 + AluY SINE Alu 3 294 -17 1984 136 64 13 chr12 104091690 104092064 -39694391 + L1MB4 LINE L1 5392 5784 -396 1911 172 57 5 chr12 104092313 104092702 -39693753 + L1MB4 LINE L1 5772 6180 0 259 256 187 0 chr12 104092993 104093088 -39693367 + MIR SINE MIR 38 148 -75 880 125 0 31 chr12 104094947 104095061 -39691394 + FLAM_C SINE Alu 1 112 -190 189 0 0 0 chr12 104095061 104095082 -39691373 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 880 125 0 31 chr12 104095082 104095095 -39691360 + FLAM_C SINE Alu 112 124 -178 292 344 28 78 chr12 104095850 104096068 -39690387 - L2 LINE L2 -37 3235 3029 260 378 7 40 chr12 104096340 104096488 -39689967 + L2 LINE L2 3125 3267 -5 901 123 8 0 chr12 104096504 104096634 -39689821 + AluJb SINE Alu 1 131 -181 1408 181 41 86 chr12 104096742 104097195 -39689260 + MSTB1 LTR MaLR 1 395 -1 660 248 158 72 chr12 104097205 104097762 -39688693 + HAL1 LINE L1 49 653 -1854 1098 131 0 48 chr12 104097769 104097937 -39688518 + AluJb SINE Alu 135 294 -18 2191 111 0 32 chr12 104097953 104098269 -39688186 + AluSg SINE Alu 5 310 0 482 101 25 0 chr12 104098343 104098422 -39688033 + AluY SINE Alu 218 298 -13 858 232 103 124 chr12 104098470 104099887 -39686568 + HAL1 LINE L1 787 2173 -334 1389 206 30 3 chr12 104098955 104099285 -39687170 - L1P LINE L1 -929 5217 4879 684 169 0 60 chr12 104099881 104099907 -39686548 + L1 LINE L1 4302 4328 -1818 788 172 0 22 chr12 104099907 104100041 -39686414 + FLAM_C SINE Alu 2 132 -1 684 169 0 60 chr12 104100041 104100197 -39686258 + L1 LINE L1 4328 4473 -1673 4190 103 43 11 chr12 104100234 104100891 -39685564 + L1PA16 LINE L1 5480 6157 -9 2352 88 0 3 chr12 104100917 104101225 -39685230 + AluY SINE Alu 1 307 -4 212 362 107 51 chr12 104101733 104102077 -39684378 - L2 LINE L2 -1437 1877 1483 2433 74 3 0 chr12 104102077 104102373 -39684082 - AluSg SINE Alu -13 297 1 212 362 107 51 chr12 104102373 104102636 -39683819 - L2 LINE L2 -1831 1483 1236 1324 183 115 4 chr12 104103544 104103796 -39682659 + AluJo SINE Alu 3 282 -30 264 30 0 0 chr12 104103803 104103836 -39682619 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr12 104103835 104103864 -39682591 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 1690 202 6 6 chr12 104104185 104104497 -39681958 + AluJb SINE Alu 1 312 0 185 61 91 0 chr12 104104501 104104534 -39681921 + A-rich Low_complexity Low_complexity 2 37 0 1554 181 64 24 chr12 104104540 104104838 -39681617 + AluJo SINE Alu 1 310 -2 1532 119 9 0 chr12 104105272 104105490 -39680965 + AluSg/x SINE Alu 83 302 -8 807 154 51 32 chr12 104105523 104105679 -39680776 + MSTD LTR MaLR 1 140 -256 288 162 11 48 chr12 104105726 104105825 -39680630 + MSTC LTR MaLR 305 396 0 2502 68 0 0 chr12 104105922 104106217 -39680238 - AluSg1 SINE Alu -14 295 1 626 251 63 67 chr12 104106954 104107363 -39679092 + L1MC5 LINE L1 7373 7782 -179 2037 128 3 3 chr12 104107363 104107651 -39678804 + AluSx SINE Alu 1 288 -24 626 251 63 67 chr12 104107651 104107666 -39678789 + L1MC5 LINE L1 7782 7796 -165 2185 96 7 7 chr12 104107666 104107959 -39678496 + AluSc SINE Alu 1 293 -16 626 251 63 67 chr12 104107959 104108024 -39678431 + L1MC5 LINE L1 7796 7861 -100 301 267 0 20 chr12 104108793 104108939 -39677516 + GA-rich Low_complexity Low_complexity 1 143 0 28 0 0 0 chr12 104109025 104109053 -39677402 + AT_rich Low_complexity Low_complexity 1 28 0 787 239 107 66 chr12 104109531 104109941 -39676514 + MLT1K LTR MaLR 154 580 -8 443 298 80 21 chr12 104110473 104110661 -39675794 + MIR SINE MIR 13 211 -51 237 368 44 29 chr12 104110695 104110831 -39675624 + MIR3 SINE MIR 3 140 -68 2583 49 0 0 chr12 104110947 104111255 -39675200 + AluY SINE Alu 1 308 -3 1952 173 0 0 chr12 104111938 104112238 -39674217 + AluSx SINE Alu 1 300 -12 851 206 5 38 chr12 104112566 104112750 -39673705 + AluJo SINE Alu 121 298 -14 23 0 0 0 chr12 104113036 104113059 -39673396 + AT_rich Low_complexity Low_complexity 1 23 0 8597 180 29 36 chr12 104113242 104115010 -39671445 - MER52A LTR ERV1 0 1755 1 2413 78 7 0 chr12 104116355 104116649 -39669806 + AluSx SINE Alu 1 296 -16 2091 119 17 0 chr12 104116791 104117084 -39669371 + AluSx SINE Alu 1 298 -14 293 308 67 2 chr12 104117218 104117348 -39669107 + MIR SINE MIR 21 161 -65 2038 156 15 0 chr12 104117514 104117853 -39668602 + MER2 DNA MER2_type 1 344 0 673 171 128 117 chr12 104118435 104118692 -39667763 - MIR SINE MIR 0 262 3 207 0 0 0 chr12 104118837 104118860 -39667595 + (GA)n Simple_repeat Simple_repeat 2 24 0 1714 189 19 10 chr12 104119009 104119316 -39667139 + AluJb SINE Alu 2 311 -1 21 36 0 0 chr12 104119322 104119350 -39667105 + AT_rich Low_complexity Low_complexity 1 28 0 296 286 22 88 chr12 104119782 104119834 -39666621 + MIR SINE MIR 3 57 -205 1701 112 165 8 chr12 104119834 104120101 -39666354 - AluSg1 SINE Alu 0 309 1 296 286 22 88 chr12 104120101 104120230 -39666225 + MIR SINE MIR 57 172 -90 2141 84 3 14 chr12 104120242 104120563 -39665892 + AluSp SINE Alu 1 318 0 590 273 70 62 chr12 104120758 104120835 -39665620 - MIR SINE MIR -12 250 175 2076 134 0 0 chr12 104120835 104121146 -39665309 + AluSx SINE Alu 1 311 0 590 273 70 62 chr12 104121146 104121309 -39665146 - MIR SINE MIR -87 175 7 29 78 0 0 chr12 104122531 104122595 -39663860 + AT_rich Low_complexity Low_complexity 1 64 0 23 68 0 0 chr12 104122811 104122855 -39663600 + AT_rich Low_complexity Low_complexity 1 44 0 1651 177 3 18 chr12 104123056 104123338 -39663117 + AluJb SINE Alu 1 278 -34 321 100 14 29 chr12 104123373 104123443 -39663012 + (GGGGA)n Simple_repeat Simple_repeat 4 72 0 543 232 45 34 chr12 104123448 104123631 -39662824 + L1ME4a LINE L1 5498 5679 -442 290 262 185 21 chr12 104123673 104123959 -39662496 + L1ME4a LINE L1 5787 6119 -2 428 263 139 10 chr12 104123992 104124186 -39662269 + L1ME LINE L1 5583 5801 -320 1078 251 17 67 chr12 104124358 104124704 -39661751 + L2 LINE L2 2198 2526 -788 478 209 156 52 chr12 104124702 104124913 -39661542 + L2 LINE L2 3081 3313 0 * 1990 135 3 41 chr12 104125216 104125534 -39660921 + AluJb SINE Alu 1 306 -6 1471 142 50 76 chr12 104125884 104126187 -39660268 + AluJo SINE Alu 1 295 -17 467 181 0 0 chr12 104126217 104126311 -39660144 + L1MC4a LINE L1 7236 7329 -479 826 169 0 0 chr12 104126316 104126440 -39660015 + AluJb SINE Alu 3 126 -186 1471 190 104 48 chr12 104126469 104126911 -39659544 + L1MD3 LINE L1 7517 7983 -12 309 257 133 18 chr12 104127821 104127934 -39658521 + L1ME4a LINE L1 5559 5684 -437 216 0 0 0 chr12 104128020 104128044 -39658411 + (TA)n Simple_repeat Simple_repeat 2 25 0 1162 207 0 31 chr12 104128047 104128269 -39658186 + AluJo SINE Alu 85 299 -13 520 223 82 43 chr12 104128272 104128465 -39657990 + L1ME4a LINE L1 5683 5888 -233 1675 181 10 14 chr12 104128465 104128758 -39657697 + AluJo SINE Alu 1 292 -20 520 223 82 43 chr12 104128758 104128797 -39657658 + L1ME4a LINE L1 5888 5924 -197 2014 114 7 0 chr12 104128983 104129304 -39657151 + AluSg SINE Alu 1 323 0 2263 119 7 0 chr12 104129342 104129652 -39656803 + AluSx SINE Alu 1 312 0 695 217 0 0 chr12 104129786 104129906 -39656549 + FLAM_C SINE Alu 1 120 -13 22 35 0 0 chr12 104130295 104130324 -39656131 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 104130671 104130701 -39655754 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 104130845 104130868 -39655587 + AT_rich Low_complexity Low_complexity 1 23 0 274 228 13 0 chr12 104131236 104131315 -39655140 + MER116 DNA Mariner 1 80 0 2078 88 28 0 chr12 104131551 104131834 -39654621 + AluSp SINE Alu 21 311 -2 1776 88 12 4 chr12 104132099 104132339 -39654116 + AluY SINE Alu 1 242 -69 180 207 0 0 chr12 104132352 104132381 -39654074 - MER5A DNA MER1_type -18 171 143 262 299 130 0 chr12 104132568 104132645 -39653810 + L2 LINE L2 3186 3272 0 203 143 0 29 chr12 104132755 104132790 -39653665 + MIR SINE MIR 201 234 -28 183 240 40 0 chr12 104132771 104132821 -39653634 + L2 LINE L2 3261 3312 -1 * 1848 182 0 7 chr12 104132939 104133236 -39653219 - AluJb SINE Alu -17 295 1 2322 105 3 3 chr12 104133517 104133830 -39652625 - AluSq SINE Alu 0 313 1 1189 181 9 14 chr12 104134440 104134656 -39651799 - MER20 DNA MER1_type -4 215 1 321 301 86 24 chr12 104134697 104134871 -39651584 + MIR SINE MIR 28 211 -51 774 266 40 0 chr12 104135383 104135560 -39650895 - MIR SINE MIR -30 232 49 334 140 0 0 chr12 104135593 104135650 -39650805 + L1MC/D LINE L1 5683 5739 -2069 248 294 54 33 chr12 104135817 104135909 -39650546 - L2 LINE L2 -2779 535 442 1087 339 134 25 chr12 104135939 104136686 -39649769 - L2 LINE L2 -2229 1085 258 1595 143 47 53 chr12 104137084 104137217 -39649238 + AluJb SINE Alu 1 133 -179 2561 60 0 0 chr12 104137217 104137518 -39648937 + AluY SINE Alu 1 301 -10 1595 143 47 53 chr12 104137518 104137685 -39648770 + AluJb SINE Alu 133 299 -13 6138 34 7 11 chr12 104137764 104138477 -39647978 + SVA Other Other 677 1386 0 1751 141 48 0 chr12 104138593 104138887 -39647568 + AluSx SINE Alu 1 307 0 297 0 0 0 chr12 104139575 104139608 -39646847 + (TA)n Simple_repeat Simple_repeat 2 34 0 2373 112 0 0 chr12 104139613 104139925 -39646530 - AluSx SINE Alu 0 312 1 2225 75 7 0 chr12 104140375 104140684 -39645771 + AluSp SINE Alu 1 311 0 291 301 58 38 chr12 104140708 104141000 -39645455 + L1ME LINE L1 5260 5557 -605 1717 151 22 45 chr12 104141047 104141187 -39645268 + AluJo SINE Alu 1 143 -169 1830 183 0 0 chr12 104141187 104141476 -39644979 + AluJb SINE Alu 3 291 -21 1717 151 22 45 chr12 104141476 104141647 -39644808 + AluJo SINE Alu 143 305 -7 2070 89 50 11 chr12 104142805 104143085 -39643370 - AluSq SINE Alu -22 291 1 367 310 95 21 chr12 104145020 104145304 -39641151 + L1MC4a LINE L1 5378 5682 -439 276 159 0 0 chr12 104145334 104145378 -39641077 + Alu SINE Alu 4 47 -255 314 307 0 13 chr12 104145434 104145584 -39640871 + L1MC4a LINE L1 5735 5882 -1926 1942 110 42 26 chr12 104145630 104145938 -39640517 + AluSq SINE Alu 1 313 0 998 155 50 0 chr12 104145988 104146169 -39640286 + MER6B DNA MER2_type 2 191 -19 297 268 161 9 chr12 104146196 104146308 -39640147 - MIR SINE MIR -57 205 77 2437 87 6 0 chr12 104146440 104146751 -39639704 - AluSq SINE Alu 0 313 1 1501 163 40 86 chr12 104146784 104147110 -39639345 + AluJb SINE Alu 1 311 -1 324 0 0 0 chr12 104147110 104147146 -39639309 + (TA)n Simple_repeat Simple_repeat 2 37 0 2098 130 0 19 chr12 104147218 104147525 -39638930 - AluSx SINE Alu -11 301 1 2215 112 3 3 chr12 104148109 104148414 -39638041 - AluSx SINE Alu -7 305 1 310 95 0 0 chr12 104148544 104148586 -39637869 - 5S rRNA rRNA -79 42 1 1036 122 0 0 chr12 104149132 104149271 -39637184 - FRAM SINE Alu -12 164 26 2512 68 0 0 chr12 104149308 104149604 -39636851 - AluSg1 SINE Alu -13 296 1 512 264 68 68 chr12 104150340 104150747 -39635708 + L1MC5 LINE L1 7373 7779 -182 2037 128 3 3 chr12 104150747 104151035 -39635420 + AluSx SINE Alu 1 288 -24 512 264 68 68 chr12 104151035 104151050 -39635405 + L1MC5 LINE L1 7779 7793 -168 2153 99 7 7 chr12 104151050 104151343 -39635112 + AluSc SINE Alu 1 293 -16 512 264 68 68 chr12 104151343 104151408 -39635047 + L1MC5 LINE L1 7792 7861 -100 469 322 0 0 chr12 104152177 104152323 -39634132 + C-rich Low_complexity Low_complexity 1 146 0 891 178 11 46 chr12 104152601 104152775 -39633680 - AluJo SINE Alu -144 168 1 2268 100 0 0 chr12 104152808 104153097 -39633358 + AluSg SINE Alu 1 289 -21 2437 102 0 3 chr12 104153153 104153467 -39632988 + AluSp SINE Alu 1 313 0 297 268 161 9 chr12 104153603 104153715 -39632740 + MIR SINE MIR 77 205 -57 998 155 50 0 chr12 104153742 104153923 -39632532 - MER6B DNA MER2_type -19 191 2 2131 102 30 3 chr12 104153980 104154285 -39632170 - AluSq SINE Alu 0 313 1 836 168 0 0 chr12 104154314 104154439 -39632016 + AluJb SINE Alu 1 125 -187 1656 162 52 0 chr12 104154825 104154978 -39631477 - AluJo SINE Alu -27 285 111 288 0 0 0 chr12 104154978 104155010 -39631445 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1656 162 52 0 chr12 104155010 104155127 -39631328 - AluJo SINE Alu -201 111 1 194 248 238 19 chr12 104155652 104155757 -39630698 + L2 LINE L2 3138 3265 -7 262 383 114 20 chr12 104156080 104156281 -39630174 + L2 LINE L2 3020 3239 -33 2701 42 0 0 chr12 104156649 104156958 -39629497 + AluY SINE Alu 1 309 -2 2053 138 3 3 chr12 104157118 104157422 -39629033 + AluSx SINE Alu 1 304 -8 2267 78 4 4 chr12 104159283 104159586 -39626869 + AluY SINE Alu 1 303 0 856 155 31 0 chr12 104160686 104160815 -39625640 + FLAM_C SINE Alu 1 133 0 1251 169 153 4 chr12 104160842 104161091 -39625364 + AluJo SINE Alu 1 286 -26 2190 110 3 0 chr12 104161109 104161401 -39625054 + AluSx SINE Alu 1 293 -19 928 111 0 15 chr12 104161514 104161649 -39624806 - AluSq/x SINE Alu -179 133 1 191 167 62 21 chr12 104162104 104162152 -39624303 - L2 LINE L2 0 3272 3223 2045 80 0 4 chr12 104164705 104164968 -39621487 + AluSx SINE Alu 42 303 -9 2234 110 0 0 chr12 104165530 104165829 -39620626 + AluSg SINE Alu 1 299 -11 2186 110 7 0 chr12 104165890 104166181 -39620274 + AluSx SINE Alu 9 301 -11 1937 120 47 0 chr12 104166331 104166606 -39619849 + AluSx SINE Alu 1 288 -24 1548 203 11 7 chr12 104166826 104167107 -39619348 + AluJb SINE Alu 1 282 -30 1964 125 21 3 chr12 104167720 104168008 -39618447 + AluJb SINE Alu 1 293 -19 2198 80 11 21 chr12 104168299 104168626 -39617829 - AluSp SINE Alu 0 324 1 1111 152 0 0 chr12 104169574 104169739 -39616716 + AluSg/x SINE Alu 133 297 -13 657 216 82 29 chr12 104169823 104169994 -39616461 + AluJo SINE Alu 126 305 -7 939 178 19 6 chr12 104170029 104170186 -39616269 + FRAM SINE Alu 1 154 -22 409 156 78 107 chr12 104170188 104170206 -39616249 - MIR SINE MIR -62 146 129 1584 170 51 4 chr12 104170206 104170482 -39615973 + AluJb SINE Alu 1 289 -23 409 156 78 107 chr12 104170482 104170612 -39615843 - MIR SINE MIR -79 129 28 785 144 0 0 chr12 104170963 104171074 -39615381 + AluSg/x SINE Alu 194 304 -8 2476 82 0 0 chr12 104171074 104171377 -39615078 + AluSc SINE Alu 1 303 -6 249 219 16 0 chr12 104171396 104171460 -39614995 + MIR SINE MIR 184 248 -14 778 199 54 6 chr12 104172431 104172597 -39613858 + MER5B DNA MER1_type 4 177 -1 1290 159 133 26 chr12 104173386 104173477 -39612978 + AluJo SINE Alu 1 81 -231 2224 98 14 7 chr12 104173477 104173772 -39612683 + AluSq SINE Alu 1 297 -16 2543 57 0 0 chr12 104173774 104174070 -39612385 + AluY SINE Alu 3 298 -13 1290 159 133 26 chr12 104174070 104174246 -39612209 + AluJo SINE Alu 81 300 -12 327 95 0 0 chr12 104174792 104174834 -39611621 + 5S rRNA rRNA 1 42 -79 2221 113 3 3 chr12 104174964 104175273 -39611182 + AluSx SINE Alu 1 309 -3 2192 111 0 19 chr12 104175853 104176160 -39610295 + AluSx SINE Alu 1 301 -11 324 0 0 0 chr12 104176232 104176268 -39610187 + (TA)n Simple_repeat Simple_repeat 2 37 0 1459 163 40 86 chr12 104176268 104176593 -39609862 - AluJb SINE Alu -2 310 1 2343 86 0 0 chr12 104176626 104176916 -39609539 + AluSg SINE Alu 1 290 -20 1336 129 152 11 chr12 104177133 104177396 -39609059 - AluSg1 SINE Alu -9 300 1 697 88 137 10 chr12 104178279 104178381 -39608074 + AluJo/FLAM SINE Alu 2 116 -186 2583 57 0 0 chr12 104178384 104178682 -39607773 - AluY SINE Alu -13 298 1 708 147 9 9 chr12 104178834 104178943 -39607512 - FAM SINE Alu -15 170 62 195 291 91 0 chr12 104178991 104179046 -39607409 + L2 LINE L2 3137 3196 -76 649 230 199 67 chr12 104179116 104179507 -39606948 - Tigger8 DNA MER2_type -3 663 221 228 308 115 23 chr12 104179633 104179763 -39606692 - Tigger8 DNA MER2_type -524 142 1 5982 127 37 22 chr12 104180059 104181497 -39604958 + L1MA9 LINE L1 4666 6129 -183 1721 157 17 20 chr12 104181497 104181796 -39604659 + AluSx SINE Alu 1 298 -14 5982 127 37 22 chr12 104181796 104181983 -39604472 + L1MA9 LINE L1 6129 6312 0 1993 112 3 34 chr12 104182296 104182618 -39603837 + AluSx SINE Alu 1 312 0 324 0 0 0 chr12 104183682 104183718 -39602737 + (CA)n Simple_repeat Simple_repeat 1 36 0 1860 155 104 15 chr12 104183984 104184319 -39602136 - MLT1A1 LTR MaLR 0 365 1 2031 121 0 26 chr12 104184498 104184803 -39601652 + AluSx SINE Alu 3 299 -13 357 143 0 57 chr12 104184845 104184915 -39601540 + L1ME1 LINE L1 5911 5976 -190 290 123 0 53 chr12 104184922 104184979 -39601476 - MLT2B1 LTR ERVL -8 456 403 231 36 0 0 chr12 104184979 104185007 -39601448 + (TAGG)n Simple_repeat Simple_repeat 2 29 0 2592 172 32 8 chr12 104185022 104185503 -39600952 - MLT2B1 LTR ERVL -24 478 1 233 163 291 23 chr12 104185537 104185623 -39600832 + L1MA10 LINE L1 6170 6278 -56 1547 154 0 79 chr12 104185628 104185933 -39600522 - AluJo SINE Alu -9 303 23 1403 189 3 66 chr12 104186117 104186454 -39600001 - AluJo SINE Alu 0 319 2 2517 74 0 0 chr12 104186481 104186792 -39599663 - AluSq SINE Alu -2 311 1 2269 65 0 17 chr12 104186799 104187092 -39599363 - AluY SINE Alu -23 288 1 1523 161 79 0 chr12 104187243 104187523 -39598932 + AluJb SINE Alu 1 302 -10 1988 184 28 50 chr12 104187548 104187971 -39598484 - MLT2D LTR ERVL 0 414 1 230 292 29 88 chr12 104188206 104188343 -39598112 - L2 LINE L2 0 3272 3144 249 57 0 0 chr12 104188358 104188393 -39598062 + (T)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 104188415 104188436 -39598019 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 104188517 104188538 -39597917 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 104188538 104188563 -39597892 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr12 104188614 104188649 -39597806 + GC_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 104188707 104188730 -39597725 + AT_rich Low_complexity Low_complexity 1 23 0 255 182 0 0 chr12 104190504 104190559 -39595896 + MER4-int LTR ERV1 1111 1165 -5433 24 32 0 0 chr12 104190790 104190821 -39595634 + AT_rich Low_complexity Low_complexity 1 31 0 213 308 19 28 chr12 104191089 104191196 -39595259 - MIR SINE MIR 0 262 157 340 276 164 26 chr12 104191219 104191371 -39595084 + MIR SINE MIR 20 192 -70 1956 251 48 29 chr12 104191457 104192047 -39594408 - L3 LINE CR1 -645 932 332 699 249 54 29 chr12 104192202 104192443 -39594012 - MIR SINE MIR -14 248 2 2337 175 40 37 chr12 104192953 104193409 -39593046 - MSTB2 LTR MaLR 0 457 1 2743 241 22 18 chr12 104193940 104194658 -39591797 - L1ME1 LINE L1 -5 6161 5441 300 148 0 0 chr12 104197132 104197193 -39589262 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2357 92 0 22 chr12 104199175 104199490 -39586965 - AluY SINE Alu -3 308 1 2509 77 0 0 chr12 104200912 104201223 -39585232 - AluY SINE Alu 0 311 1 357 350 109 24 chr12 104201589 104201920 -39584535 - L2 LINE L2 0 3272 2914 237 286 0 57 chr12 104202077 104202147 -39584308 + MIR SINE MIR 184 249 -13 2283 100 0 0 chr12 104202213 104202504 -39583951 + AluSc SINE Alu 15 305 -4 359 281 12 0 chr12 104202651 104202733 -39583722 + L2 LINE L2 3231 3313 0 264 242 254 19 chr12 104203029 104203204 -39583251 - MIR SINE MIR -39 223 20 557 309 104 40 chr12 104204003 104204330 -39582125 + L2 LINE L2 2965 3312 -1 181 213 43 21 chr12 104204957 104205004 -39581451 - MIR SINE MIR -115 147 100 2474 78 0 3 chr12 104205335 104205642 -39580813 + AluSg SINE Alu 1 306 -4 1224 132 0 6 chr12 104205651 104205825 -39580630 + AluSg/x SINE Alu 127 299 -13 3497 190 20 42 chr12 104206412 104206489 -39579966 + L1MA10 LINE L1 5598 5675 -659 2232 117 0 0 chr12 104206489 104206788 -39579667 + AluSx SINE Alu 1 299 -13 3497 190 20 42 chr12 104206788 104207464 -39578991 + L1MA10 LINE L1 5675 6334 0 2091 134 6 14 chr12 104207799 104208143 -39578312 + L1PA16 LINE L1 5826 6166 0 375 312 102 16 chr12 104208403 104208589 -39577866 + MIR SINE MIR 21 222 -40 508 353 57 35 chr12 104208776 104209232 -39577223 - L2 LINE L2 0 3313 2848 1305 140 0 15 chr12 104209751 104209951 -39576504 + AluSg/x SINE Alu 77 273 -39 2301 85 0 0 chr12 104210480 104210773 -39575682 + AluY SINE Alu 1 293 -18 213 119 0 0 chr12 104210862 104210904 -39575551 + (GA)n Simple_repeat Simple_repeat 1 42 0 333 328 55 0 chr12 104211211 104211339 -39575116 + MIR SINE MIR 57 191 -71 391 315 15 0 chr12 104212061 104212191 -39574264 - MIR SINE MIR -123 139 8 838 327 86 19 chr12 104212648 104213067 -39573388 - L3 LINE CR1 -3 1574 1128 323 338 40 76 chr12 104213211 104213436 -39573019 - L3 LINE CR1 -790 787 571 16485 124 20 16 chr12 104213626 104214215 -39572240 - L1 LINE L1 -3097 4468 3883 181 0 69 0 chr12 104214215 104214244 -39572211 + (TA)n Simple_repeat Simple_repeat 2 32 0 16485 124 20 16 chr12 104214244 104217005 -39569450 - L1 LINE L1 -3682 3883 1099 686 107 36 0 chr12 104217002 104217114 -39569341 - L1 LINE L1 -7432 133 18 * 231 218 18 0 chr12 104218452 104218507 -39567948 + GA-rich Low_complexity Low_complexity 1 56 0 2157 102 3 14 chr12 104218989 104219334 -39567121 + AluY SINE Alu 1 311 0 190 203 43 87 chr12 104219811 104219880 -39566575 + L2 LINE L2 3193 3258 -55 239 260 0 65 chr12 104219952 104220029 -39566426 + L2 LINE L2 3242 3313 0 980 324 104 17 chr12 104220034 104220632 -39565823 - L2 LINE L2 -414 2900 2251 1914 225 16 18 chr12 104220767 104221215 -39565240 + L2 LINE L2 2283 2729 -585 764 282 131 30 chr12 104221197 104221594 -39564861 + L2 LINE L2 2831 3267 -46 * 207 114 0 0 chr12 104221691 104221726 -39564729 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 412 261 96 0 chr12 104222135 104222250 -39564205 - MSTC LTR MaLR -302 126 1 381 286 38 0 chr12 104222524 104222629 -39563826 - MER5A DNA MER1_type -77 112 4 185 386 30 15 chr12 104222844 104222976 -39563479 - L2 LINE L2 -455 2859 2726 261 0 0 0 chr12 104223068 104223097 -39563358 + (A)n Simple_repeat Simple_repeat 1 29 0 1632 194 14 17 chr12 104223182 104223314 -39563141 + AluJo SINE Alu 1 132 -180 2205 122 3 0 chr12 104223314 104223609 -39562846 + AluSx SINE Alu 1 296 -16 1632 194 14 17 chr12 104223609 104223770 -39562685 + AluJo SINE Alu 132 293 -19 221 344 74 48 chr12 104223771 104224149 -39562306 - L2 LINE L2 -843 2471 2084 313 300 47 59 chr12 104224296 104224466 -39561989 + MIR SINE MIR 34 201 -61 293 290 58 22 chr12 104224636 104224774 -39561681 - L2 LINE L2 -4 3309 3167 692 220 82 13 chr12 104225717 104225876 -39560579 + FRAM SINE Alu 1 169 -7 2285 128 0 0 chr12 104226114 104226420 -39560035 - AluSx SINE Alu -6 306 1 737 82 6 75 chr12 104227383 104227542 -39558913 + AluY SINE Alu 1 148 -163 1660 112 4 12 chr12 104227663 104227913 -39558542 - AluSx SINE Alu -63 249 2 22 0 0 0 chr12 104228411 104228433 -39558022 + AT_rich Low_complexity Low_complexity 1 22 0 414 247 182 26 chr12 104228483 104228637 -39557818 - MER5A DNA MER1_type -1 188 11 774 278 92 22 chr12 104228909 104229309 -39557146 - L1ME3A LINE L1 -236 5934 5507 1634 217 89 44 chr12 104229309 104229855 -39556600 - MLT1E2 LTR MaLR 0 626 5 313 252 43 29 chr12 104229876 104230015 -39556440 - MLT1E2-int LTR MaLR -8 1727 1587 612 273 26 109 chr12 104230015 104230437 -39556018 - MLT1E2-int LTR MaLR -293 1078 692 1363 239 18 0 chr12 104230641 104230976 -39555479 - MLT1E2-int LTR MaLR -767 604 264 1822 158 7 4 chr12 104231019 104231292 -39555163 + AluJo SINE Alu 11 284 -28 1060 205 22 27 chr12 104231388 104231612 -39554843 - AluJo SINE Alu -4 308 86 2273 263 70 28 chr12 104231635 104232893 -39553562 - L1MCc LINE L1 -4122 3000 1452 1712 182 10 23 chr12 104232893 104233200 -39553255 - AluJb SINE Alu -9 303 1 2273 263 70 28 chr12 104233200 104233436 -39553019 - L1MCc LINE L1 -5670 1452 1227 29 78 0 0 chr12 104233552 104233616 -39552839 + AT_rich Low_complexity Low_complexity 1 64 0 385 335 101 0 chr12 104234039 104234227 -39552228 + MLT1K LTR MaLR 311 517 -71 21 36 0 0 chr12 104234237 104234265 -39552190 + AT_rich Low_complexity Low_complexity 1 28 0 5410 124 21 22 chr12 104234271 104235938 -39550517 - L1MA8 LINE L1 -7 6284 4613 543 148 0 0 chr12 104235938 104236019 -39550436 + AluJ/FLAM SINE Alu 1 81 -231 942 220 0 11 chr12 104236019 104236326 -39550129 + AluJo/FRAM SINE Alu 129 433 0 1628 133 38 0 chr12 104236330 104236623 -39549832 - L1MA8 LINE L1 -1527 4619 4316 502 302 106 54 chr12 104237328 104237559 -39548896 - MIR SINE MIR -3 259 18 314 299 36 108 chr12 104237563 104237757 -39548698 + MIR3 SINE MIR 16 195 -13 554 147 17 86 chr12 104237759 104237875 -39548580 - MER44D DNA MER2_type -1 704 597 209 259 0 35 chr12 104237877 104237962 -39548493 + (TA)n Simple_repeat Simple_repeat 2 83 0 1692 172 112 32 chr12 104237972 104238384 -39548071 - MER44D DNA MER2_type -100 505 6 503 294 40 40 chr12 104239181 104239382 -39547073 + MIR SINE MIR 1 201 -61 2265 113 0 0 chr12 104239617 104239917 -39546538 - AluSx SINE Alu -12 300 1 201 339 0 15 chr12 104240541 104240606 -39545849 + MIR SINE MIR 11 74 -188 470 259 38 15 chr12 104240623 104240754 -39545701 - MIR SINE MIR -109 153 20 267 355 37 0 chr12 104241078 104241185 -39545270 - L2 LINE L2 -7 3265 3155 326 211 0 0 chr12 104241332 104241389 -39545066 - L2 LINE L2 -3 3269 3213 32 26 0 0 chr12 104242273 104242312 -39544143 + AT_rich Low_complexity Low_complexity 1 39 0 203 320 39 13 chr12 104242569 104242647 -39543808 - MIR SINE MIR -64 144 65 937 148 66 33 chr12 104243367 104243549 -39542906 - MER5A DNA MER1_type 0 189 2 313 272 44 49 chr12 104243578 104243708 -39542747 - MER5B DNA MER1_type -2 176 51 195 42 0 0 chr12 104244028 104244052 -39542403 + (T)n Simple_repeat Simple_repeat 1 24 0 303 71 0 0 chr12 104244122 104244164 -39542291 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 829 246 82 12 chr12 104244734 104244978 -39541477 - MIR SINE MIR 0 262 2 849 295 88 42 chr12 104245259 104245468 -39540987 + L2 LINE L2 2811 3009 -304 1727 123 65 86 chr12 104245468 104245851 -39540604 + THE1C LTR MaLR 1 375 0 849 295 88 42 chr12 104245851 104246048 -39540407 + L2 LINE L2 3009 3236 -77 2010 146 0 3 chr12 104246321 104246623 -39539832 - AluSx SINE Alu -11 301 1 21 36 0 0 chr12 104247128 104247156 -39539299 + AT_rich Low_complexity Low_complexity 1 28 0 2295 157 5 20 chr12 104247437 104247488 -39538967 - MLT1B LTR MaLR 0 390 340 2082 102 0 11 chr12 104247488 104247763 -39538692 + AluSx SINE Alu 1 272 -40 2295 157 5 20 chr12 104247763 104248106 -39538349 - MLT1B LTR MaLR -50 340 2 441 246 60 8 chr12 104248329 104248463 -39537992 - MIR SINE MIR 0 262 122 1040 88 0 0 chr12 104248463 104248588 -39537867 + AluSq/x SINE Alu 1 125 -187 22 0 0 0 chr12 104248588 104248610 -39537845 + AT_rich Low_complexity Low_complexity 1 22 0 277 350 21 0 chr12 104248612 104248709 -39537746 - MIR SINE MIR -132 130 32 1599 243 101 24 chr12 104248745 104249371 -39537084 + L1MEc LINE L1 36 709 -5687 2492 75 3 3 chr12 104249689 104249997 -39536458 + AluY SINE Alu 1 308 -3 2160 80 45 3 chr12 104250655 104250941 -39535514 - AluSc SINE Alu -11 298 1 225 275 14 14 chr12 104253326 104253395 -39533060 + GA-rich Low_complexity Low_complexity 3 71 0 2381 103 3 0 chr12 104253508 104253819 -39532636 - AluSx SINE Alu 0 312 1 3996 169 63 40 chr12 104253853 104254382 -39532073 - L1MB1 LINE L1 -7 6161 5645 1854 148 27 7 chr12 104254382 104254679 -39531776 - AluJo SINE Alu -9 303 1 3996 169 63 40 chr12 104254679 104254762 -39531693 - L1MB1 LINE L1 -523 5645 5565 3956 180 32 10 chr12 104254762 104255573 -39530882 - L1MA9 LINE L1 0 6312 5484 3996 169 63 40 chr12 104255573 104255615 -39530840 - L1MB1 LINE L1 -603 5565 5525 699 164 53 20 chr12 104255615 104255767 -39530688 - L1MA9 LINE L1 -15 6297 6141 3996 169 63 40 chr12 104255767 104256715 -39529740 - L1MB1 LINE L1 -643 5525 4520 191 315 19 0 chr12 104256902 104256956 -39529499 + L2 LINE L2 3161 3215 -57 243 229 31 21 chr12 104257437 104257533 -39528922 + MLT1L LTR MaLR 510 606 -9 490 279 143 0 chr12 104257540 104257701 -39528754 + MIR SINE MIR 79 262 0 324 254 56 24 chr12 104260070 104260196 -39526259 - MIR SINE MIR -22 240 111 245 179 0 18 chr12 104261599 104261655 -39524800 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr12 104262019 104262048 -39524407 + AT_rich Low_complexity Low_complexity 1 29 0 1058 232 12 42 chr12 104263444 104263685 -39522770 + MIR SINE MIR 8 241 -21 510 241 129 6 chr12 104263776 104263946 -39522509 - MIR SINE MIR -7 255 65 1417 165 50 15 chr12 104264039 104264326 -39522129 - AluJb SINE Alu 0 316 21 596 123 41 143 chr12 104264414 104264590 -39521865 + MLT1E LTR MaLR 287 370 -4 249 139 0 0 chr12 104266345 104266388 -39520067 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 7778 40 0 0 chr12 104266962 104268425 -39518030 - L1PA5 LINE L1 -1 6153 4681 211 361 24 0 chr12 104268611 104268694 -39517761 - MIR SINE MIR -23 239 155 277 264 198 19 chr12 104268772 104268878 -39517577 + L2 LINE L2 3189 3313 0 742 193 10 23 chr12 104270196 104270721 -39515734 + CT-rich Low_complexity Low_complexity 1 517 0 855 275 128 26 chr12 104270722 104271144 -39515311 - L2 LINE L2 -7 3306 2842 237 33 0 0 chr12 104273010 104273040 -39513415 + (GA)n Simple_repeat Simple_repeat 1 30 0 249 300 11 22 chr12 104273289 104273379 -39513076 + MIR3 SINE MIR 87 175 -33 313 61 15 61 chr12 104274290 104274356 -39512099 - AluS SINE Alu -239 64 2 571 249 60 87 chr12 104274359 104274979 -39511476 - L1MEc LINE L1 -4707 1508 954 2305 49 0 21 chr12 104274980 104275292 -39511163 - AluY SINE Alu 0 306 1 5177 96 8 19 chr12 104276126 104276165 -39510290 + L1MA3 LINE L1 5269 5307 -998 1765 154 7 3 chr12 104276165 104276458 -39509997 + AluSp SINE Alu 1 294 -19 5177 96 8 19 chr12 104276458 104277160 -39509295 + L1MA3 LINE L1 5307 6002 -303 1344 107 16 16 chr12 104277267 104277485 -39508970 + L1PA5 LINE L1 5855 6072 -82 204 232 53 84 chr12 104328534 104328629 -39457826 + MIR SINE MIR 33 124 -84 369 324 149 29 chr12 104328648 104329092 -39457363 + L2 LINE L2 1704 2200 -1114 1260 288 156 19 chr12 104329223 104329290 -39457165 - L2 LINE L2 -1297 2017 1961 3059 97 5 11 chr12 104329290 104329735 -39456720 + L1PA11 LINE L1 5733 6174 0 1260 288 156 19 chr12 104329735 104330365 -39456090 - L2 LINE L2 -1353 1961 1224 278 325 58 0 chr12 104330446 104330566 -39455889 + MIR SINE MIR 63 189 -73 629 224 0 15 chr12 104331563 104331725 -39454730 + FLAM_C SINE Alu 1 160 0 832 180 0 11 chr12 104331725 104331903 -39454552 + GA-rich Low_complexity Low_complexity 3 178 0 239 133 22 0 chr12 104331919 104331964 -39454491 + GA-rich Low_complexity Low_complexity 1 46 0 10999 110 9 5 chr12 104332104 104332392 -39454063 - L1PA8A LINE L1 -655 5476 5191 2349 98 10 0 chr12 104332392 104332689 -39453766 - AluSc SINE Alu -9 300 1 10999 110 9 5 chr12 104332689 104334241 -39452214 - L1PA8A LINE L1 -940 5191 3633 15314 54 5 0 chr12 104334341 104336577 -39449878 + L1P2 LINE L1 3335 5579 -575 3101 80 7 4 chr12 104336677 104337137 -39449318 - L1PA8A LINE L1 -226 5905 5445 * 22245 88 9 11 chr12 104337128 104340391 -39446064 + L1P LINE L1 11 3267 -2879 7125 55 3 26 chr12 104340501 104341474 -39444981 - L1PA6 LINE L1 -2 6152 5203 1959 98 25 95 chr12 104341474 104341801 -39444654 - AluY SINE Alu -7 304 1 7125 55 3 26 chr12 104341801 104342278 -39444177 - L1PA6 LINE L1 -951 5203 4717 8098 164 38 18 chr12 104342278 104344030 -39442425 - L1 LINE L1 -1164 4982 3197 335 273 133 40 chr12 104344137 104344287 -39442168 + MIR3 SINE MIR 37 200 -8 31 0 0 0 chr12 104344442 104344473 -39441982 + AT_rich Low_complexity Low_complexity 1 31 0 509 282 19 6 chr12 104344767 104344907 -39441548 + MER92A LTR ERV1 2 143 -269 2522 133 5 8 chr12 104344907 104345304 -39441151 - MSTA LTR MaLR 0 428 33 723 240 58 31 chr12 104345345 104345603 -39440852 + MER92A LTR ERV1 139 403 -9 1858 167 47 21 chr12 104346428 104346960 -39439495 - MLT2A2 LTR ERVL 0 554 1 26 0 0 0 chr12 104347059 104347085 -39439370 + AT_rich Low_complexity Low_complexity 1 26 0 328 339 8 39 chr12 104347518 104347648 -39438807 + MIR SINE MIR 19 144 -64 2254 150 22 12 chr12 104347657 104348063 -39438392 - MSTA LTR MaLR 0 428 19 27 0 0 0 chr12 104348266 104348293 -39438162 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 104348338 104348366 -39438089 + AT_rich Low_complexity Low_complexity 1 28 0 227 286 45 62 chr12 104348551 104348663 -39437792 - L2 LINE L2 -600 2714 2605 278 219 0 62 chr12 104348663 104348727 -39437728 + Charlie3 DNA MER1_type 1 60 -2650 1802 100 0 11 chr12 104348830 104349090 -39437365 + Charlie3 DNA MER1_type 2450 2706 -4 1114 148 0 6 chr12 104349683 104349875 -39436580 - AluJb SINE Alu 0 307 117 374 349 56 10 chr12 104349998 104350193 -39436262 - L1M4 LINE L1 -1040 5106 4903 2389 70 17 3 chr12 104350237 104350539 -39435916 + AluY SINE Alu 1 306 -5 2219 116 0 0 chr12 104350687 104350972 -39435483 + AluSg SINE Alu 1 285 -25 1343 165 3 70 chr12 104351521 104351806 -39434649 - MER67D LTR ERV1 -234 280 15 673 268 96 0 chr12 104352142 104352340 -39434115 - MIR SINE MIR -39 223 7 527 267 106 0 chr12 104353010 104353190 -39433265 + MIR SINE MIR 49 247 -15 48 0 0 0 chr12 104353379 104353427 -39433028 + AT_rich Low_complexity Low_complexity 1 48 0 244 121 58 46 chr12 104353427 104353600 -39432855 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 7395 126 46 7 chr12 104353841 104354369 -39432086 - HSMAR2 DNA Mariner 0 1302 796 2165 137 16 29 chr12 104354369 104354749 -39431706 + THE1C LTR MaLR 1 375 0 7395 126 46 7 chr12 104354749 104355469 -39430986 - HSMAR2 DNA Mariner -506 796 5 480 177 13 0 chr12 104355474 104355553 -39430902 - Tigger3(Golem) DNA MER2_type -2949 80 1 287 314 50 7 chr12 104355624 104355764 -39430691 + L3 LINE CR1 1424 1569 -8 209 300 0 17 chr12 104356120 104356180 -39430275 - L3 LINE CR1 -3 1574 1516 804 249 88 0 chr12 104356190 104356395 -39430060 + MIR SINE MIR 40 262 0 235 383 78 7 chr12 104356621 104356762 -39429693 - MIR3 SINE MIR -52 156 6 2052 134 50 34 chr12 104357506 104357864 -39428591 - THE1B LTR MaLR 0 364 1 408 178 56 0 chr12 104358091 104358198 -39428257 - L1PA8 LINE L1 -4 6168 6056 3139 126 18 11 chr12 104358303 104358859 -39427596 - L1P LINE L1 -2597 3549 2990 1152 249 8 27 chr12 104360556 104360794 -39425661 - MIR SINE MIR 0 262 28 1614 223 25 83 chr12 104360794 104361345 -39425110 - MLT2B1 LTR ERVL 0 520 2 1152 249 8 27 chr12 104361345 104361367 -39425088 - MIR SINE MIR -234 28 7 248 260 26 0 chr12 104361987 104362064 -39424391 + (TATG)n Simple_repeat Simple_repeat 4 82 0 333 322 65 30 chr12 104362206 104362405 -39424050 + L1M4 LINE L1 3816 4021 -2125 287 247 22 0 chr12 104362410 104362499 -39423956 + L1M4 LINE L1 4106 4196 -1950 199 122 44 44 chr12 104362687 104362777 -39423678 + (TA)n Simple_repeat Simple_repeat 1 90 0 472 296 109 17 chr12 104362790 104363212 -39423243 + L1M4 LINE L1 4387 4847 -1299 344 308 28 49 chr12 104363715 104363858 -39422597 + MIR3 SINE MIR 21 160 -48 838 299 116 26 chr12 104364657 104365115 -39421340 + L3 LINE CR1 682 1180 -397 497 332 80 13 chr12 104365698 104365924 -39420531 + L3 LINE CR1 1335 1575 -2 2396 135 64 25 chr12 104366356 104366764 -39419691 + MSTB LTR MaLR 1 424 -2 188 291 17 106 chr12 104367280 104367342 -39419113 + L2 LINE L2 3016 3082 -231 4925 83 27 3 chr12 104367342 104368019 -39418436 + L1PB1 LINE L1 5453 6145 -6 188 291 17 106 chr12 104368019 104368135 -39418320 + L2 LINE L2 3082 3178 -135 396 245 170 7 chr12 104368239 104368386 -39418069 + L2 LINE L2 3131 3301 -12 506 274 0 37 chr12 104370266 104370401 -39416054 + MIR3 SINE MIR 72 201 -7 615 350 56 35 chr12 104372005 104372490 -39413965 - L2 LINE L2 -1330 1984 1490 28 0 0 0 chr12 104372939 104372967 -39413488 + AT_rich Low_complexity Low_complexity 1 28 0 260 341 57 65 chr12 104373444 104373673 -39412782 + L2 LINE L2 2825 3051 -221 505 279 52 13 chr12 104373934 104374088 -39412367 + MIR SINE MIR 6 165 -97 453 281 30 0 chr12 104374474 104374609 -39411846 + LTR67 LTR ERVL 405 543 -14 26 30 0 0 chr12 104375270 104375303 -39411152 + AT_rich Low_complexity Low_complexity 1 33 0 682 157 0 43 chr12 104375303 104375418 -39411037 + Tigger3(Golem) DNA MER2_type 2929 3038 0 236 368 0 13 chr12 104375457 104375533 -39410922 - MIR3 SINE MIR -125 83 9 269 311 61 38 chr12 104375593 104375725 -39410730 + MIR3 SINE MIR 37 171 -37 31 0 0 0 chr12 104375731 104375762 -39410693 + AT_rich Low_complexity Low_complexity 1 31 0 10132 184 19 11 chr12 104376212 104378017 -39408438 + L1M1 LINE L1 13 1833 -5732 31557 118 15 60 chr12 104378121 104383861 -39402594 - L1P3 LINE L1 -686 5486 12 481 271 33 0 chr12 104384571 104384722 -39401733 - MER103 DNA DNA -3 163 8 2181 86 7 4 chr12 104384727 104385033 -39401422 - AluSq SINE Alu 0 310 4 6652 109 15 24 chr12 104385283 104386057 -39400398 + L1MA3 LINE L1 5202 5964 -341 1772 134 100 31 chr12 104386057 104386408 -39400047 + THE1C LTR MaLR 1 375 0 6652 109 15 24 chr12 104386408 104386747 -39399708 + L1MA3 LINE L1 5964 6305 0 1367 193 30 4 chr12 104387165 104387430 -39399025 - MER39 LTR ERV1 -25 682 411 643 203 92 3 chr12 104387475 104387663 -39398792 - MER39 LTR ERV1 -425 282 5 189 0 0 0 chr12 104387754 104387775 -39398680 + (A)n Simple_repeat Simple_repeat 1 21 0 287 316 68 26 chr12 104387992 104388109 -39398346 - L2 LINE L2 -3 3269 3148 2265 96 45 20 chr12 104388724 104389102 -39397353 - THE1B LTR MaLR 0 375 1 5721 120 2 4 chr12 104389102 104389918 -39396537 - THE1B-int LTR MaLR 0 1580 766 2735 112 64 0 chr12 104389915 104390373 -39396082 - THE1B-int LTR MaLR -1150 430 1 * 2388 103 43 6 chr12 104390376 104390725 -39395730 - THE1B LTR MaLR -2 362 1 987 194 145 43 chr12 104390839 104391190 -39395265 - HsTC2 DNA Tc2 -82 1816 1430 365 278 45 8 chr12 104391225 104391358 -39395097 - HsTC2 DNA Tc2 -1757 141 4 276 339 41 8 chr12 104392013 104392134 -39394321 + MIR SINE MIR 20 144 -118 261 238 113 38 chr12 104392438 104392518 -39393937 - L2 LINE L2 -4 3309 3224 188 316 31 10 chr12 104392847 104392945 -39393510 - L2 LINE L2 -570 2744 2645 1467 145 19 6 chr12 104393447 104393891 -39392564 - LTR54 LTR ERV1 0 510 1 1421 206 71 87 chr12 104393891 104394028 -39392427 - LTR49-int LTR ERV1 -490 7326 7188 454 104 13 26 chr12 104394028 104394105 -39392350 + MADE1 DNA Mariner 1 76 -4 1421 206 71 87 chr12 104394105 104394446 -39392009 - LTR49-int LTR ERV1 -628 7188 6676 646 211 26 19 chr12 104394618 104394774 -39391681 - LTR49-int LTR ERV1 -761 4110 3954 894 82 0 37 chr12 104394774 104394909 -39391546 - LTR19A LTR ERV1 0 486 357 3273 90 43 0 chr12 104394919 104395385 -39391070 - LTR19A LTR ERV1 0 486 1 3463 254 48 20 chr12 104395385 104396465 -39389990 - LTR49-int LTR ERV1 -913 3958 2849 271 161 247 12 chr12 104396475 104396556 -39389899 - LTR49-int LTR ERV1 -1898 4433 4334 * 1919 214 82 85 chr12 104396551 104397468 -39388987 - LTR49-int LTR ERV1 -2000 2936 2023 524 236 54 34 chr12 104397586 104397947 -39388508 - LTR49-int LTR ERV1 -2957 1979 1694 516 244 0 30 chr12 104397956 104398091 -39388364 + MER34 LTR ERV1 1 131 -411 716 249 11 0 chr12 104398302 104398479 -39387976 - LTR49-int LTR ERV1 -4104 1019 841 808 229 42 123 chr12 104398564 104399173 -39387282 - LTR49-int LTR ERV1 -3773 2558 464 270 203 0 63 chr12 104399179 104399258 -39387197 - LTR49-int LTR ERV1 -7047 490 417 709 242 13 0 chr12 104399347 104399496 -39386959 - LTR49-int LTR ERV1 -4089 2242 2092 267 270 80 10 chr12 104399487 104399587 -39386868 - LTR49-int LTR ERV1 -4185 2146 2040 * 1293 174 20 46 chr12 104399714 104400175 -39386280 - LTR54 LTR ERV1 0 510 1 181 356 11 0 chr12 104401110 104401200 -39385255 - L2 LINE L2 0 3313 3223 2404 82 0 3 chr12 104401416 104401720 -39384735 + AluY SINE Alu 1 303 -8 236 338 36 29 chr12 104401726 104401865 -39384590 - L2 LINE L2 -200 3072 2933 562 261 178 54 chr12 104402045 104402480 -39383975 + MLT1H LTR MaLR 23 549 0 209 344 0 16 chr12 104403154 104403215 -39383240 + L2 LINE L2 3203 3262 -10 312 27 0 0 chr12 104403216 104403253 -39383202 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 633 282 66 8 chr12 104403958 104404247 -39382208 + L2 LINE L2 2762 3065 -248 1035 178 9 71 chr12 104405869 104406094 -39380361 - MLT1F LTR MaLR -2 540 330 608 229 21 0 chr12 104406197 104406337 -39380118 - MLT2B1 LTR ERVL -373 147 5 413 291 27 20 chr12 104406367 104406515 -39379940 - MLT1J2 LTR MaLR -299 151 3 201 74 0 0 chr12 104406585 104406612 -39379843 + (TC)n Simple_repeat Simple_repeat 2 28 0 327 104 0 0 chr12 104406612 104406660 -39379795 + (CA)n Simple_repeat Simple_repeat 1 48 0 1907 142 34 3 chr12 104406790 104407085 -39379370 - AluJb SINE Alu -8 304 1 1369 177 26 19 chr12 104407248 104407513 -39378942 + L1MB7 LINE L1 5900 6166 -18 253 176 0 20 chr12 104407648 104407699 -39378756 + FLAM_A SINE Alu 49 92 -41 305 412 23 0 chr12 104407721 104407852 -39378603 - L2 LINE L2 -6 3266 3133 24 32 0 0 chr12 104408056 104408087 -39378368 + AT_rich Low_complexity Low_complexity 1 31 0 330 292 92 23 chr12 104408168 104408298 -39378157 - L2 LINE L2 -199 3073 2935 824 240 41 19 chr12 104408342 104408706 -39377749 - MLT1J1 LTR MaLR -2 444 63 1651 153 2 143 chr12 104410131 104410570 -39375885 - MLT1B LTR MaLR -8 382 6 908 252 107 82 chr12 104410958 104411114 -39375341 + MLT1G1 LTR MaLR 1 152 -443 4003 124 31 2 chr12 104411114 104411759 -39374696 + L1MA3 LINE L1 5637 6300 -5 908 252 107 82 chr12 104411759 104412015 -39374440 + MLT1G1 LTR MaLR 152 423 -172 492 305 81 8 chr12 104412269 104412515 -39373940 + MLT1-int LTR MaLR 289 552 -819 1079 126 140 29 chr12 104412819 104412932 -39373523 + MER30 DNA MER1_type 1 100 -130 2301 80 0 46 chr12 104412932 104413256 -39373199 + AluSg1 SINE Alu 1 309 0 1079 126 140 29 chr12 104413256 104413349 -39373106 + MER30 DNA MER1_type 100 230 0 260 252 34 92 chr12 104413719 104413838 -39372617 + MLT1-int LTR MaLR 1028 1139 -232 20840 171 39 10 chr12 104414171 104418664 -39367791 - L1 LINE L1 -2940 4625 11 1912 224 22 30 chr12 104418680 104419215 -39367240 + L1ME1 LINE L1 5634 6164 -2 930 371 12 6 chr12 104419276 104419616 -39366839 - L2 LINE L2 -420 2894 2553 203 305 122 8 chr12 104420697 104420828 -39365627 - MIR SINE MIR -10 252 107 2563 256 74 23 chr12 104420871 104422017 -39364438 + L2 LINE L2 2079 3283 -30 195 167 119 0 chr12 104422517 104422559 -39363896 + L2 LINE L2 3221 3267 -5 3089 141 23 0 chr12 104422815 104423292 -39363163 + MLT2B2 LTR ERVL 1 488 -27 1888 164 3 13 chr12 104424814 104425113 -39361342 + AluJo SINE Alu 1 296 -16 442 322 97 26 chr12 104425412 104425599 -39360856 + MIR SINE MIR 19 226 -36 2313 130 25 0 chr12 104425599 104425954 -39360501 - THE1B LTR MaLR 0 364 1 442 322 97 26 chr12 104425954 104425993 -39360462 + MIR SINE MIR 226 261 -1 411 256 43 43 chr12 104426599 104426716 -39359739 + L2 LINE L2 3155 3271 -1 27 0 0 0 chr12 104426962 104426989 -39359466 + AT_rich Low_complexity Low_complexity 1 27 0 741 306 76 55 chr12 104427378 104427797 -39358658 - L2 LINE L2 -2 3311 2884 2246 228 72 38 chr12 104427798 104428282 -39358173 + L1ME LINE L1 4593 5059 -1107 1984 94 7 0 chr12 104428282 104428570 -39357885 + L1PA13 LINE L1 5871 6160 -3 2246 228 72 38 chr12 104428570 104429078 -39357377 + L1ME LINE L1 5059 5628 -538 6476 124 9 15 chr12 104429078 104429258 -39357197 - L1MA3 LINE L1 -7 6298 6118 1867 124 4 0 chr12 104429258 104429517 -39356938 + AluSp SINE Alu 37 296 -17 6476 124 9 15 chr12 104429517 104430419 -39356036 - L1MA3 LINE L1 -187 6118 5223 294 329 69 76 chr12 104430965 104431254 -39355201 - L2 LINE L2 -1 3271 2985 2073 234 26 26 chr12 104431373 104431868 -39354587 - MLT1D LTR MaLR -9 496 2 241 289 13 94 chr12 104432272 104432431 -39354024 + MLT1K LTR MaLR 277 422 -166 1274 45 0 0 chr12 104432509 104432663 -39353792 + L1PA3 LINE L1 5999 6152 -3 213 108 0 0 chr12 104432666 104432703 -39353752 + (A)n Simple_repeat Simple_repeat 1 37 0 190 209 47 23 chr12 104432843 104432886 -39353569 + MER5A DNA MER1_type 144 187 -2 232 329 92 0 chr12 104432887 104433051 -39353404 - L2 LINE L2 -1294 2020 1842 282 248 120 0 chr12 104433091 104433216 -39353239 - L1ME4a LINE L1 -8 6113 5974 233 187 154 22 chr12 104433232 104433323 -39353132 - L1ME4a LINE L1 -235 5886 5784 769 236 89 47 chr12 104434312 104434761 -39351694 - L1MC5 LINE L1 -30 7931 7464 33 0 0 0 chr12 104434848 104434881 -39351574 + AT_rich Low_complexity Low_complexity 1 33 0 2394 97 0 3 chr12 104435190 104435500 -39350955 + AluSc SINE Alu 1 309 0 1681 225 77 16 chr12 104435641 104436112 -39350343 - MER39 LTR ERV1 -23 684 1 23 54 0 0 chr12 104436372 104436409 -39350046 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr12 104437134 104437157 -39349298 + (T)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr12 104437702 104437737 -39348718 + (TA)n Simple_repeat Simple_repeat 2 36 0 312 325 41 118 chr12 104437838 104438328 -39348127 - L2 LINE L2 -5 3267 2816 33 25 0 0 chr12 104438520 104438560 -39347895 + AT_rich Low_complexity Low_complexity 1 40 0 373 403 17 0 chr12 104438628 104438804 -39347651 - L2 LINE L2 -557 2757 2579 515 269 61 103 chr12 104438846 104439158 -39347297 - L2 LINE L2 -55 3258 2960 2377 62 0 3 chr12 104439541 104439832 -39346623 + AluY SINE Alu 1 290 -21 227 263 152 30 chr12 104441321 104441420 -39345035 + MIR SINE MIR 3 113 -149 230 370 171 36 chr12 104441433 104441795 -39344660 + L2 LINE L2 2825 3235 -37 249 33 0 0 chr12 104441809 104441839 -39344616 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 272 262 33 0 chr12 104442526 104442587 -39343868 + L2 LINE L2 3209 3271 -1 483 306 134 9 chr12 104442838 104443070 -39343385 + MIR SINE MIR 2 262 0 392 278 26 9 chr12 104443127 104443242 -39343213 + MIR SINE MIR 100 216 -46 509 189 144 9 chr12 104443872 104443983 -39342472 - MER5A DNA MER1_type 0 189 64 420 172 172 0 chr12 104443990 104444077 -39342378 - MER5A DNA MER1_type -28 161 60 688 218 95 0 chr12 104444080 104444227 -39342228 - MER5A DNA MER1_type -28 161 1 997 185 14 28 chr12 104444235 104444446 -39342009 - MER3 DNA MER1_type 0 209 2 373 341 97 47 chr12 104444958 104445257 -39341198 + HAL1 LINE L1 1144 1457 -1050 322 282 120 46 chr12 104445284 104445406 -39341049 + HAL1b LINE L1 444 556 -792 1673 119 128 41 chr12 104445406 104445751 -39340704 - THE1C LTR MaLR 0 375 1 322 282 120 46 chr12 104445751 104445844 -39340611 + HAL1b LINE L1 556 675 -673 342 237 101 111 chr12 104446154 104446352 -39340103 + MIR SINE MIR 65 260 -2 262 232 162 0 chr12 104446699 104446841 -39339614 + L1ME4a LINE L1 5956 6120 -1 2014 257 216 41 chr12 104446954 104448208 -39338247 - L2 LINE L2 -6 3307 1829 252 231 269 10 chr12 104450294 104450398 -39336057 + MIR SINE MIR 125 255 -7 21 36 0 0 chr12 104450692 104450720 -39335735 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 104451251 104451272 -39335183 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 104451737 104451770 -39334685 + AT_rich Low_complexity Low_complexity 1 33 0 711 282 58 66 chr12 104451813 104452074 -39334381 + L1MEc LINE L1 898 1160 -5150 2375 58 3 3 chr12 104452074 104452368 -39334087 - AluY SINE Alu -17 294 1 711 282 58 66 chr12 104452368 104452824 -39333631 + L1MEc LINE L1 1160 1663 -4647 1603 126 0 0 chr12 104453051 104453274 -39333181 - AluSg/x SINE Alu 0 310 88 1443 287 93 30 chr12 104453395 104454706 -39331749 + L1MEc LINE L1 2636 4029 -2100 944 208 6 0 chr12 104454899 104455067 -39331388 - Charlie1 DNA MER1_type -2591 170 2 2266 222 42 27 chr12 104455069 104455663 -39330792 - L1MC4 LINE L1 -202 7840 7238 395 165 88 0 chr12 104455667 104455758 -39330697 - L1MC4 LINE L1 -961 7081 6983 1733 168 14 20 chr12 104456092 104456389 -39330066 - AluJo SINE Alu -17 295 1 181 264 19 57 chr12 104457852 104457905 -39328550 - L2 LINE L2 -12 3260 3210 210 187 107 40 chr12 104457945 104458020 -39328435 - MIR SINE MIR 0 262 183 229 308 62 55 chr12 104458100 104458246 -39328209 - L2 LINE L2 -217 3055 2909 401 262 85 40 chr12 104459159 104459437 -39327018 - HAL1b LINE L1 -14 2493 815 1318 275 86 66 chr12 104460007 104460865 -39325590 - HAL1 LINE L1 -601 1906 1032 495 0 0 0 chr12 104461289 104461344 -39325111 + (TG)n Simple_repeat Simple_repeat 1 55 0 342 129 0 0 chr12 104461343 104461405 -39325050 + (GA)n Simple_repeat Simple_repeat 1 62 0 626 278 38 24 chr12 104461930 104462139 -39324316 + MIR SINE MIR 7 218 -44 2466 93 0 3 chr12 104462637 104462950 -39323505 + AluSx SINE Alu 1 312 0 315 246 97 60 chr12 104463134 104463268 -39323187 - MIR SINE MIR -25 237 99 837 139 0 44 chr12 104463494 104463631 -39322824 - FLAM_C SINE Alu -2 131 1 350 296 91 111 chr12 104464746 104465548 -39320907 - L2 LINE L2 0 3272 2456 290 245 24 47 chr12 104467893 104467993 -39318462 - MIR SINE MIR -64 144 60 229 284 0 15 chr12 104469162 104469229 -39317226 - MIR3 SINE MIR -30 178 113 319 351 52 0 chr12 104470621 104470755 -39315700 + L2 LINE L2 3173 3313 0 2928 271 104 33 chr12 104470782 104471546 -39314909 + L2 LINE L2 1571 2456 -858 234 91 0 0 chr12 104471546 104471579 -39314876 + (CA)n Simple_repeat Simple_repeat 2 34 0 2928 271 104 33 chr12 104471579 104472034 -39314421 + L2 LINE L2 2456 2877 -437 1691 175 84 29 chr12 104472036 104472567 -39313888 + MLT2A2 LTR ERVL 1 553 -1 573 263 45 142 chr12 104472568 104472963 -39313492 + L2 LINE L2 2874 3215 -98 186 103 0 0 chr12 104472963 104472992 -39313463 + (TA)n Simple_repeat Simple_repeat 1 29 0 573 263 45 142 chr12 104472992 104473083 -39313372 + L2 LINE L2 3215 3313 0 287 237 0 0 chr12 104473144 104473203 -39313252 - tRNA-Ile-ATT tRNA tRNA -18 59 1 217 287 264 15 chr12 104473802 104473958 -39312497 - MIR SINE MIR -56 206 16 390 74 0 0 chr12 104474631 104474685 -39311770 + (CA)n Simple_repeat Simple_repeat 2 55 0 368 268 228 51 chr12 104475098 104475352 -39311103 + L2 LINE L2 2191 2489 -825 3421 155 27 8 chr12 104475630 104476223 -39310232 + MER6A DNA MER2_type 2 605 0 1543 214 87 34 chr12 104476510 104476982 -39309473 - MLT1D LTR MaLR -4 501 5 9426 96 3 2 chr12 104477926 104479338 -39307117 + L1P LINE L1 3287 4699 -1447 24 32 0 0 chr12 104479340 104479371 -39307084 + AT_rich Low_complexity Low_complexity 1 31 0 465 293 49 12 chr12 104479473 104479637 -39306818 - MIR SINE MIR 0 262 93 986 250 18 5 chr12 104479811 104480031 -39306424 - MIR SINE MIR -9 253 31 2383 95 3 7 chr12 104480035 104480341 -39306114 - AluSq SINE Alu -8 305 1 5969 103 8 36 chr12 104480352 104481224 -39305231 - L1PA14 LINE L1 0 6161 5291 2181 123 0 0 chr12 104481224 104481516 -39304939 - AluSx SINE Alu -16 296 5 5969 103 8 36 chr12 104481516 104481642 -39304813 - L1PA14 LINE L1 -870 5291 5163 196 317 37 12 chr12 104481818 104481900 -39304555 + MIR SINE MIR 102 185 -77 187 291 55 0 chr12 104482459 104482514 -39303941 - L2 LINE L2 -1 3312 3255 291 372 44 0 chr12 104483021 104483134 -39303321 + L2 LINE L2 3155 3272 0 240 214 22 90 chr12 104483225 104483314 -39303141 + MIR SINE MIR 112 194 -68 184 282 0 0 chr12 104483326 104483365 -39303090 - L2 LINE L2 -11 3261 3223 185 372 90 43 chr12 104483405 104483593 -39302862 - L2 LINE L2 -48 3224 3028 225 292 69 56 chr12 104483778 104483922 -39302533 + MIR SINE MIR 29 174 -88 276 305 88 99 chr12 104484832 104485104 -39301351 - L2 LINE L2 0 3272 3004 225 296 37 12 chr12 104485948 104486029 -39300426 + MIR SINE MIR 39 121 -87 * 261 235 128 29 chr12 104486027 104486129 -39300326 + MIR SINE MIR 81 192 -70 437 267 99 0 chr12 104486215 104486346 -39300109 + MIR SINE MIR 6 149 -113 290 363 55 14 chr12 104486452 104486598 -39299857 - MIR SINE MIR -109 153 2 328 311 115 0 chr12 104487568 104487690 -39298765 - L2 LINE L2 0 3272 3137 39 88 0 0 chr12 104488805 104488907 -39297548 + AT_rich Low_complexity Low_complexity 1 102 0 938 166 68 10 chr12 104489212 104489417 -39297038 + L1MA4 LINE L1 6080 6296 -4 274 339 80 9 chr12 104490078 104490190 -39296265 + L2 LINE L2 3141 3260 -12 2182 75 0 4 chr12 104490200 104490466 -39295989 - AluY SINE Alu -9 302 38 466 202 18 70 chr12 104490978 104491092 -39295363 - L2 LINE L2 -5 3308 3201 244 352 19 29 chr12 104491989 104492094 -39294361 + L2 LINE L2 3137 3240 -32 612 226 7 29 chr12 104493076 104493213 -39293242 - FRAM SINE Alu -45 131 1 1746 210 0 0 chr12 104493223 104493528 -39292927 - AluJb SINE Alu -7 305 1 213 39 0 0 chr12 104493550 104493576 -39292879 + (GAA)n Simple_repeat Simple_repeat 2 27 0 624 329 162 36 chr12 104493586 104494128 -39292327 + L2 LINE L2 1712 2184 -1130 2152 141 0 0 chr12 104494128 104494426 -39292029 + AluSx SINE Alu 1 298 -14 624 329 162 36 chr12 104494426 104494885 -39291570 + L2 LINE L2 2184 2839 -475 2092 148 0 0 chr12 104495160 104495458 -39290997 + AluSx SINE Alu 1 298 -14 258 289 114 18 chr12 104495500 104495614 -39290841 + L2 LINE L2 3142 3266 -6 189 211 0 0 chr12 104495619 104495671 -39290784 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 1582 165 29 3 chr12 104496031 104496340 -39290115 - MER45B DNA AcHobo -4 1036 720 1302 301 82 37 chr12 104496457 104497161 -39289294 - MER45C DNA AcHobo -183 770 35 293 176 19 62 chr12 104497165 104497271 -39289184 - MIR SINE MIR -97 111 13 360 0 0 0 chr12 104497329 104497369 -39289086 + (A)n Simple_repeat Simple_repeat 1 40 0 487 254 32 24 chr12 104497774 104497900 -39288555 + MIR SINE MIR 62 188 -74 5351 135 29 2 chr12 104498013 104498968 -39287487 + L1MA3 LINE L1 1932 2912 -4653 6288 141 15 18 chr12 104498976 104500504 -39285951 + L1MA3 LINE L1 6195 7724 0 603 125 0 0 chr12 104501482 104501586 -39284869 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 189 0 0 0 chr12 104501837 104501858 -39284597 + (A)n Simple_repeat Simple_repeat 1 21 0 318 333 283 4 chr12 104502384 104502621 -39283834 + L2 LINE L2 2586 2888 -426 543 289 13 85 chr12 104502627 104502973 -39283482 + L2 LINE L2 2668 2992 -280 184 390 53 0 chr12 104503189 104503284 -39283171 + L2 LINE L2 3155 3254 -18 517 216 183 7 chr12 104503435 104503588 -39282867 - MER5A DNA MER1_type 0 189 10 23 54 0 0 chr12 104504588 104504625 -39281830 + AT_rich Low_complexity Low_complexity 1 37 0 280 333 20 29 chr12 104505207 104505309 -39281146 - MIR3 SINE MIR -1 207 107 331 235 31 80 chr12 104505880 104506042 -39280413 + L1ME4a LINE L1 5255 5408 -2400 447 325 68 10 chr12 104506176 104506487 -39279968 + L1ME4a LINE L1 5555 5883 -238 2511 252 119 21 chr12 104506497 104507611 -39278844 - L1MEc LINE L1 -5063 1333 111 21 0 0 0 chr12 104507707 104507728 -39278727 + AT_rich Low_complexity Low_complexity 1 21 0 309 206 228 22 chr12 104507832 104507968 -39278487 + L1ME4a LINE L1 5943 6106 -15 302 235 37 88 chr12 104508398 104508451 -39278004 - MIR SINE MIR -10 252 198 1902 171 61 6 chr12 104508451 104508797 -39277658 + MLT1A1 LTR MaLR 1 365 0 302 235 37 88 chr12 104508797 104508879 -39277576 - MIR SINE MIR -64 198 124 2513 161 52 54 chr12 104509168 104509727 -39276728 + MER74A LTR ERVL 1 558 0 332 73 73 0 chr12 104509744 104509799 -39276656 - MLT1H LTR MaLR -262 287 229 254 333 56 0 chr12 104511536 104511644 -39274811 + MIR SINE MIR 147 260 -2 23 0 0 0 chr12 104512230 104512253 -39274202 + AT_rich Low_complexity Low_complexity 1 23 0 207 176 0 0 chr12 104512571 104512608 -39273847 + (CA)n Simple_repeat Simple_repeat 1 37 0 1848 168 7 0 chr12 104514488 104514786 -39271669 + AluSx SINE Alu 1 300 -12 33 43 0 0 chr12 104515540 104515587 -39270868 + AT_rich Low_complexity Low_complexity 1 47 0 36209 97 14 7 chr12 104515611 104521710 -39264745 - L1PA6 LINE L1 -2 6152 11 661 168 0 0 chr12 104521737 104521844 -39264611 + FLAM_A SINE Alu 13 119 -23 189 171 0 0 chr12 104522299 104522334 -39264121 + (TA)n Simple_repeat Simple_repeat 1 35 0 2505 81 17 0 chr12 104522528 104522874 -39263581 - L1PA13 LINE L1 -2 6161 5810 756 156 33 0 chr12 104522876 104522998 -39263457 + L1P LINE L1 4047 4172 -1974 1956 139 54 25 chr12 104522999 104523352 -39263103 + THE1C LTR MaLR 1 363 -12 509 163 0 0 chr12 104523355 104523441 -39263014 + L1P LINE L1 4169 4254 -1892 555 300 33 17 chr12 104523512 104523692 -39262763 + MER5A DNA MER1_type 7 189 0 239 328 16 0 chr12 104524206 104524270 -39262185 + L3 LINE CR1 1397 1461 -116 377 238 152 19 chr12 104524875 104524980 -39261475 + MIR SINE MIR 37 155 -107 220 258 121 0 chr12 104526336 104526402 -39260053 - MIR SINE MIR -112 150 77 2546 62 0 3 chr12 104526609 104526916 -39259539 - AluY SINE Alu -5 306 1 15203 131 31 31 chr12 104527505 104529090 -39257365 + Tigger4(Zombi) DNA MER2_type 150 1732 -999 2148 163 74 20 chr12 104529090 104529494 -39256961 - MSTB LTR MaLR 0 426 1 15203 131 31 31 chr12 104529494 104529913 -39256542 + Tigger4(Zombi) DNA MER2_type 1732 2149 -582 2022 136 0 7 chr12 104529913 104530207 -39256248 + AluSx SINE Alu 1 292 -20 15203 131 31 31 chr12 104530207 104530781 -39255674 + Tigger4(Zombi) DNA MER2_type 2149 2731 0 27 29 0 0 chr12 104531259 104531293 -39255162 + AT_rich Low_complexity Low_complexity 1 34 0 431 297 40 49 chr12 104531304 104531583 -39254872 - MLT1K LTR MaLR -92 496 188 1557 266 98 44 chr12 104531602 104532151 -39254304 - MLT1E LTR MaLR 0 593 15 257 350 65 16 chr12 104532165 104532288 -39254167 - MLT1K LTR MaLR -420 168 40 23 54 0 0 chr12 104532432 104532469 -39253986 + AT_rich Low_complexity Low_complexity 1 37 0 289 226 48 24 chr12 104533202 104533286 -39253169 - MIR SINE MIR -7 255 170 466 269 124 74 chr12 104533786 104534223 -39252232 + L2 LINE L2 2791 3251 -21 301 222 0 0 chr12 104535715 104535778 -39250677 - MIR SINE MIR -194 68 6 481 267 101 45 chr12 104536168 104536415 -39250040 + MIR SINE MIR 2 262 0 196 220 203 0 chr12 104536421 104536480 -39249975 + MIR SINE MIR 187 257 -5 270 304 96 40 chr12 104536882 104537007 -39249448 + L2 LINE L2 3182 3313 0 520 339 23 6 chr12 104537332 104537503 -39248952 + L2 LINE L2 2932 3105 -208 2322 101 0 16 chr12 104537510 104537827 -39248628 - AluSq SINE Alu -1 312 1 7367 231 43 29 chr12 104537845 104540902 -39245553 - L1ME1 LINE L1 -6 6971 3837 238 167 0 0 chr12 104540902 104540938 -39245517 + tRNA-Asp-GAC tRNA tRNA 1 36 -39 7367 231 43 29 chr12 104540938 104541049 -39245406 - L1ME1 LINE L1 -3140 3837 3729 1445 157 70 0 chr12 104541896 104542195 -39244260 + L1MD2 LINE L1 5254 5573 -669 1999 222 101 25 chr12 104542198 104542556 -39243899 + L1MD2 LINE L1 5754 6172 -187 333 0 0 0 chr12 104542556 104542593 -39243862 + (CA)n Simple_repeat Simple_repeat 2 38 0 1999 222 101 25 chr12 104542593 104542797 -39243658 + L1MD2 LINE L1 6172 6359 0 2218 93 14 0 chr12 104542991 104543281 -39243174 - AluSg SINE Alu -16 294 1 22 70 0 0 chr12 104543646 104543689 -39242766 + AT_rich Low_complexity Low_complexity 1 43 0 1852 187 20 27 chr12 104543723 104544124 -39242331 - L1MB8 LINE L1 -21 6157 5760 * 4198 220 87 79 chr12 104544120 104544517 -39241938 - L1ME1 LINE L1 -5649 1210 817 1461 163 89 11 chr12 104544517 104544799 -39241656 - AluJo SINE Alu -1 311 8 4198 220 87 79 chr12 104544799 104544872 -39241583 - L1ME1 LINE L1 -6042 817 746 5607 137 9 2 chr12 104544872 104545413 -39241042 + L1PA16 LINE L1 4495 5031 -1135 2269 85 0 33 chr12 104545413 104545718 -39240737 + AluY SINE Alu 1 295 -16 5607 137 9 2 chr12 104545718 104546843 -39239612 + L1PA16 LINE L1 5031 6166 0 4198 220 87 79 chr12 104546843 104547571 -39238884 - L1ME1 LINE L1 -6113 746 2 206 146 49 0 chr12 104547627 104547668 -39238787 + MIR SINE MIR 111 153 -109 1293 137 14 0 chr12 104548242 104548454 -39238001 - L1PB4 LINE L1 0 6156 5942 21 0 0 0 chr12 104549086 104549107 -39237348 + AT_rich Low_complexity Low_complexity 1 21 0 287 368 93 41 chr12 104549474 104549988 -39236467 - L2 LINE L2 -407 2907 2367 303 203 0 17 chr12 104550001 104550060 -39236395 - L2 LINE L2 -1 3312 3255 * 689 256 166 23 chr12 104550057 104550358 -39236097 + L3 LINE CR1 1231 1574 -3 202 152 65 22 chr12 104550836 104550882 -39235573 + GA-rich Low_complexity Low_complexity 3 50 0 2161 142 0 0 chr12 104554505 104554815 -39231640 - AluSx SINE Alu -2 310 1 211 398 9 0 chr12 104555742 104555855 -39230600 + L2 LINE L2 3139 3252 -20 342 356 43 9 chr12 104555955 104556070 -39230385 - L2 LINE L2 0 3272 3154 192 264 69 56 chr12 104557386 104557458 -39228997 + MIR3 SINE MIR 111 183 -25 251 233 17 33 chr12 104558426 104558486 -39227969 + MIR SINE MIR 200 258 -4 334 298 120 66 chr12 104558490 104558938 -39227517 + L2 LINE L2 2683 3150 -122 1327 160 38 0 chr12 104558965 104559178 -39227277 - MER58A DNA MER1_type 0 224 4 206 237 13 53 chr12 104559279 104559355 -39227100 + GA-rich Low_complexity Low_complexity 3 75 0 622 272 28 125 chr12 104559572 104559932 -39226523 + L2 LINE L2 2943 3267 -5 181 391 0 0 chr12 104560307 104560371 -39226084 - L2 LINE L2 -1 3271 3208 216 357 125 46 chr12 104560637 104560965 -39225490 + L2 LINE L2 2804 3157 -115 1567 137 66 119 chr12 104561062 104561472 -39224983 - MLT1B LTR MaLR -2 388 1 213 327 73 18 chr12 104561928 104562093 -39224362 - MIR SINE MIR -4 258 85 252 296 163 0 chr12 104563381 104563479 -39222976 - MIR SINE MIR -102 160 47 625 200 177 29 chr12 104563690 104563865 -39222590 + MIR SINE MIR 62 262 0 238 158 18 70 chr12 104564010 104564067 -39222388 + 7SK RNA RNA 133 186 -7 366 367 9 0 chr12 104564081 104564190 -39222265 - MIR3 SINE MIR -41 167 58 22 70 0 0 chr12 104564353 104564396 -39222059 + AT_rich Low_complexity Low_complexity 1 43 0 192 363 100 12 chr12 104564835 104564915 -39221540 - L2 LINE L2 -52 3220 3134 227 215 62 15 chr12 104566687 104566752 -39219703 - L1ME LINE L1 -479 5642 5575 568 288 67 38 chr12 104566980 104567390 -39219065 + L2 LINE L2 2639 3072 -241 356 271 68 68 chr12 104567438 104567630 -39218825 + MIR SINE MIR 58 249 -13 580 247 12 54 chr12 104567649 104567815 -39218640 + L2 LINE L2 3155 3313 0 266 122 20 0 chr12 104567915 104567964 -39218491 + MER53 DNA DNA 6 55 -134 207 254 36 0 chr12 104568024 104568079 -39218376 + CT-rich Low_complexity Low_complexity 3 59 0 332 350 22 15 chr12 104568918 104569055 -39217400 + MIR SINE MIR 55 192 -70 180 0 0 0 chr12 104569415 104569435 -39217020 + (T)n Simple_repeat Simple_repeat 1 20 0 473 179 63 11 chr12 104570076 104570171 -39216284 + MIR SINE MIR 140 239 -23 477 245 0 0 chr12 104572371 104572473 -39213982 + MER3 DNA MER1_type 2 103 -106 270 246 58 29 chr12 104572484 104572622 -39213833 - L2 LINE L2 -1379 1935 1794 2055 93 75 0 chr12 104572789 104573067 -39213388 + AluSq SINE Alu 9 307 -6 312 283 33 11 chr12 104575256 104575348 -39211107 - MIR3 SINE MIR -1 207 114 334 391 17 11 chr12 104575351 104575530 -39210925 + L2 LINE L2 2680 2859 -455 3264 75 9 0 chr12 104575879 104576321 -39210134 - L1PA13 LINE L1 -4 6159 5714 22 0 0 0 chr12 104576528 104576550 -39209905 + AT_rich Low_complexity Low_complexity 1 22 0 426 0 0 0 chr12 104576550 104576601 -39209854 - L1PA3 LINE L1 -3 6152 6102 1887 151 0 33 chr12 104577167 104577466 -39208989 - AluSx SINE Alu -10 302 14 679 79 0 0 chr12 104578000 104578089 -39208366 + 5S rRNA rRNA 2 90 -31 504 172 0 0 chr12 104578191 104578284 -39208171 + L1MB3 LINE L1 6081 6173 -10 301 169 0 108 chr12 104578984 104579049 -39207406 + L2 LINE L2 3237 3294 -19 541 308 61 5 chr12 104579284 104579482 -39206973 + L2 LINE L2 2600 2808 -506 * 1047 266 42 33 chr12 104579476 104579837 -39206618 + L2 LINE L2 2950 3313 0 192 125 0 0 chr12 104580006 104580038 -39206417 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 399 244 64 35 chr12 104581667 104581839 -39204616 - LTR31 LTR ERV1 0 619 443 1435 246 111 19 chr12 104582631 104583144 -39203311 - MLT1E LTR MaLR -8 585 26 221 163 0 0 chr12 104584828 104584871 -39201584 + T-rich Low_complexity Low_complexity 1 43 0 979 245 23 0 chr12 104584903 104585119 -39201336 - MER58A DNA MER1_type 0 224 4 489 315 15 0 chr12 104585777 104585907 -39200548 - L2 LINE L2 0 3313 3182 357 199 45 34 chr12 104585939 104586115 -39200340 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 * 365 198 47 29 chr12 104585992 104586164 -39200291 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 918 241 130 19 chr12 104586408 104586802 -39199653 - MLT1J2 LTR MaLR -8 442 3 488 280 12 48 chr12 104587854 104588022 -39198433 - MIR3 SINE MIR -3 205 44 651 312 98 4 chr12 104588592 104588826 -39197629 + MIR SINE MIR 2 257 -5 736 273 52 32 chr12 104588950 104589199 -39197256 - L2 LINE L2 0 3313 3060 180 353 118 0 chr12 104589192 104589260 -39197195 - MIR SINE MIR -186 76 1 * 586 259 97 5 chr12 104589410 104589595 -39196860 + MIR SINE MIR 57 258 -4 2184 110 3 0 chr12 104589960 104590260 -39196195 + AluSg SINE Alu 1 301 -9 215 290 68 62 chr12 104590639 104590815 -39195640 - L2 LINE L2 -23 3290 3114 1561 164 57 7 chr12 104590940 104591220 -39195235 + AluJo SINE Alu 1 294 -18 910 226 99 37 chr12 104591787 104592030 -39194425 - MIR SINE MIR -2 260 3 327 321 89 57 chr12 104592822 104593102 -39193353 - L2 LINE L2 -46 3226 2938 285 75 0 0 chr12 104593161 104593201 -39193254 + (TC)n Simple_repeat Simple_repeat 2 41 0 1203 180 180 3 chr12 104593387 104593682 -39192773 + MER7A DNA MER2_type 1 345 -1 390 115 0 0 chr12 104593985 104594046 -39192409 + (CA)n Simple_repeat Simple_repeat 2 62 0 1229 274 92 33 chr12 104595116 104595559 -39190896 + L2 LINE L2 2503 3005 -308 1925 157 3 19 chr12 104595559 104595871 -39190584 - AluSx SINE Alu -5 307 1 1229 274 92 33 chr12 104595871 104596198 -39190257 + L2 LINE L2 3005 3311 -2 506 16 0 16 chr12 104596385 104596449 -39190006 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 556 319 16 5 chr12 104599682 104599873 -39186582 - MIR SINE MIR 0 262 70 188 338 149 14 chr12 104599965 104600113 -39186342 + L2 LINE L2 2327 2494 -820 302 226 51 51 chr12 104600358 104600495 -39185960 - MLT1J LTR MaLR -50 461 325 490 263 121 20 chr12 104600500 104600665 -39185790 + MER5A DNA MER1_type 1 188 -1 494 69 0 14 chr12 104601316 104601324 -39185131 + (TG)n Simple_repeat Simple_repeat 1 78 0 494 69 0 14 chr12 104601324 104601396 -39185059 + (TG)n Simple_repeat Simple_repeat 2 72 0 532 298 8 0 chr12 104602314 104602445 -39184010 - MIR3 SINE MIR 0 208 77 294 357 39 23 chr12 104602684 104602813 -39183642 - L2 LINE L2 -5 3267 3137 2881 6 0 0 chr12 104603016 104603327 -39183128 + AluY SINE Alu 1 311 0 1951 142 0 41 chr12 104603504 104603821 -39182634 + AluSx SINE Alu 1 304 -8 536 286 69 0 chr12 104604733 104604908 -39181547 - MIR SINE MIR -17 245 59 487 310 61 31 chr12 104604994 104605255 -39181200 - L2 LINE L2 -815 2499 2231 261 348 142 21 chr12 104605435 104605668 -39180787 - L2 LINE L2 -510 2804 2544 347 243 150 36 chr12 104605800 104605940 -39180515 + L2 LINE L2 3155 3310 -3 22 0 0 0 chr12 104606150 104606172 -39180283 + AT_rich Low_complexity Low_complexity 1 22 0 2092 123 0 26 chr12 104607206 104607514 -39178941 + AluSx SINE Alu 1 300 -12 2868 9 0 3 chr12 104609290 104609607 -39176848 - AluYb8 SINE Alu -2 316 1 2373 79 3 22 chr12 104611056 104611373 -39175082 + AluY SINE Alu 1 311 0 234 62 0 0 chr12 104612721 104612753 -39173702 + (TG)n Simple_repeat Simple_repeat 2 33 0 765 225 94 0 chr12 104614000 104614160 -39172295 - MER45A DNA AcHobo 0 178 4 2970 264 53 30 chr12 104614162 104614638 -39171817 - L1MEc LINE L1 -4612 1784 1320 2220 131 0 0 chr12 104614638 104614935 -39171520 - AluSx SINE Alu -15 297 1 2970 264 53 30 chr12 104614935 104615215 -39171240 - L1MEc LINE L1 -5076 1320 1048 2406 84 0 28 chr12 104615215 104615535 -39170920 - AluY SINE Alu 0 311 1 2970 264 53 30 chr12 104615535 104616431 -39170024 - L1MEc LINE L1 -5348 1048 37 409 298 0 18 chr12 104616463 104616577 -39169878 + MER5B DNA MER1_type 67 178 0 189 273 0 0 chr12 104616592 104616636 -39169819 - L2 LINE L2 -559 2755 2712 24 0 0 0 chr12 104616764 104616788 -39169667 + AT_rich Low_complexity Low_complexity 1 24 0 417 264 38 63 chr12 104617098 104617257 -39169198 + MIR SINE MIR 34 188 -74 528 267 95 45 chr12 104619164 104619385 -39167070 + MIR SINE MIR 14 245 -17 925 310 106 24 chr12 104619474 104619967 -39166488 - MLT1H LTR MaLR -16 533 1 1687 175 11 7 chr12 104620010 104620334 -39166121 - AluJb SINE Alu 0 325 1 219 200 40 0 chr12 104621119 104621169 -39165286 + MIR SINE MIR 28 79 -183 454 228 59 0 chr12 104621190 104621291 -39165164 + L2 LINE L2 3201 3307 -6 241 276 0 0 chr12 104621370 104621428 -39165027 - MIR SINE MIR -80 182 125 255 61 0 0 chr12 104621755 104621788 -39164667 + (CA)n Simple_repeat Simple_repeat 2 34 0 202 114 0 29 chr12 104621789 104621824 -39164631 + (GA)n Simple_repeat Simple_repeat 2 35 0 870 30 0 0 chr12 104622249 104622385 -39164070 + L1PA3 LINE L1 6042 6177 0 206 326 133 10 chr12 104622425 104622523 -39163932 + MIR3 SINE MIR 4 113 -95 225 311 136 8 chr12 104622535 104622667 -39163788 + L2 LINE L2 3161 3309 -4 1703 257 108 18 chr12 104622957 104623877 -39162578 - L2 LINE L2 -15 3298 2282 1957 97 54 4 chr12 104624539 104624818 -39161637 - AluSg1 SINE Alu -16 293 1 1784 255 152 6 chr12 104625010 104625641 -39160814 - HsTC2c DNA Tc2 -3 726 4 418 257 222 63 chr12 104626209 104626373 -39160082 + L2 LINE L2 2818 2955 -358 4659 101 3 6 chr12 104626373 104627028 -39159427 - MER39B LTR ERV1 0 653 1 418 257 222 63 chr12 104627028 104627291 -39159164 + L2 LINE L2 2955 3313 0 1987 142 10 3 chr12 104627438 104627733 -39158722 + AluJb SINE Alu 2 298 -14 1351 90 0 0 chr12 104628376 104628543 -39157912 - AluSg/x SINE Alu -17 295 129 514 287 102 0 chr12 104628814 104628971 -39157484 - MER5B DNA MER1_type -5 173 1 1198 244 84 27 chr12 104629355 104629797 -39156658 + MLT1C LTR MaLR 1 467 0 372 252 50 117 chr12 104630166 104630590 -39155865 - MLT1L LTR MaLR -4 611 101 326 253 110 131 chr12 104631244 104631489 -39154966 - L2 LINE L2 -4 3268 3029 239 321 118 1 chr12 104632141 104632266 -39154189 - MIR SINE MIR -63 145 31 24 32 0 0 chr12 104632913 104632944 -39153511 + AT_rich Low_complexity Low_complexity 1 31 0 212 308 13 0 chr12 104633838 104633916 -39152539 - MIR SINE MIR 0 262 184 272 244 26 26 chr12 104634236 104634314 -39152141 - MIR SINE MIR -99 163 86 306 243 162 9 chr12 104634521 104634632 -39151823 + MIR3 SINE MIR 71 198 -10 642 313 60 32 chr12 104635345 104635811 -39150644 + L1MEd LINE L1 2 480 -5639 1580 276 43 63 chr12 104635973 104636644 -39149811 + MLT2F LTR ERVL 6 663 0 292 184 26 40 chr12 104636927 104637003 -39149452 + MER88 LTR ERVL 79 153 -311 * 1334 256 46 40 chr12 104636939 104637419 -39149036 - MER74B LTR ERVL -74 548 66 299 331 31 41 chr12 104637492 104637812 -39148643 + L1ME3A LINE L1 5594 5910 -260 44 80 0 0 chr12 104638052 104638152 -39148303 + AT_rich Low_complexity Low_complexity 1 100 0 236 228 35 0 chr12 104638160 104638274 -39148181 + (TA)n Simple_repeat Simple_repeat 2 119 0 312 209 93 0 chr12 104639323 104639409 -39147046 - MIR SINE MIR -73 189 96 27 0 0 0 chr12 104639979 104640006 -39146449 + AT_rich Low_complexity Low_complexity 1 27 0 308 342 45 60 chr12 104640428 104640627 -39145828 - L3 LINE CR1 -26 1551 1356 425 280 83 26 chr12 104640635 104640828 -39145627 + MIR SINE MIR 47 250 -12 21 0 0 0 chr12 104641384 104641405 -39145050 + AT_rich Low_complexity Low_complexity 1 21 0 575 310 93 7 chr12 104641405 104641847 -39144608 + L1ME4a LINE L1 5628 6107 -14 23 0 0 0 chr12 104642116 104642139 -39144316 + AT_rich Low_complexity Low_complexity 1 23 0 187 120 20 40 chr12 104642412 104642462 -39143993 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2674 244 57 49 chr12 104742551 104743943 -39042512 + L1PA13 LINE L1 196 1801 -4986 1342 87 0 0 chr12 104744476 104744649 -39041806 - AluY SINE Alu -8 303 131 462 256 173 51 chr12 104745624 104745815 -39040640 + L1ME4a LINE L1 5541 5707 -414 1128 170 0 26 chr12 104745815 104746044 -39040411 + L1MA4 LINE L1 6078 6300 0 462 256 173 51 chr12 104746044 104746263 -39040192 + L1ME4a LINE L1 5707 6001 -120 414 53 0 0 chr12 104746302 104746359 -39040096 + (CA)n Simple_repeat Simple_repeat 1 57 0 230 372 51 0 chr12 104746382 104746460 -39039995 - L2 LINE L2 -76 3196 3115 245 309 95 16 chr12 104746483 104746609 -39039846 + L2 LINE L2 3171 3306 -7 277 339 39 24 chr12 104746646 104746773 -39039682 - L2 LINE L2 -191 3081 2953 2592 114 3 0 chr12 104748277 104748637 -39037818 + THE1B LTR MaLR 4 364 0 10613 100 15 58 chr12 104748637 104750283 -39036172 + THE1B-int LTR MaLR 1 1575 -5 2444 113 32 0 chr12 104750299 104750644 -39035811 + THE1B LTR MaLR 1 356 -8 1677 187 10 0 chr12 104750656 104750945 -39035510 - AluJb SINE Alu -20 292 1 2667 228 73 32 chr12 104752415 104753335 -39033120 - L1ME1 LINE L1 0 6166 5174 2840 16 0 3 chr12 104753335 104753654 -39032801 - AluYb8 SINE Alu 0 318 1 2667 228 73 32 chr12 104753654 104754019 -39032436 - L1ME1 LINE L1 -992 5174 4826 307 267 79 0 chr12 104754152 104754253 -39032202 - MIR SINE MIR -80 182 74 3359 130 18 30 chr12 104755026 104755362 -39031093 - Tigger1 DNA MER2_type 0 2418 2090 2442 87 0 0 chr12 104755362 104755673 -39030782 - AluY SINE Alu 0 311 1 3359 130 18 30 chr12 104755673 104755899 -39030556 - Tigger1 DNA MER2_type -328 2090 1863 11113 138 20 18 chr12 104756095 104757017 -39029438 - Tigger1 DNA MER2_type -550 1868 949 2458 132 3 21 chr12 104757017 104757397 -39029058 - THE1C LTR MaLR -2 373 1 11113 138 20 18 chr12 104757397 104758339 -39028116 - Tigger1 DNA MER2_type -1469 949 1 246 285 85 60 chr12 104758515 104758715 -39027740 - L1MC/D LINE L1 -1991 5817 5613 350 292 15 23 chr12 104758718 104758848 -39027607 + L1ME LINE L1 5672 5800 -370 32 51 0 38 chr12 104758913 104758992 -39027463 + AT_rich Low_complexity Low_complexity 1 76 0 197 324 40 27 chr12 104759701 104759775 -39026680 - L2 LINE L2 -13 3259 3185 670 210 141 125 chr12 104759775 104760166 -39026289 - MLT1E1-int LTR MaLR -98 1273 877 599 281 10 31 chr12 104760246 104760442 -39026013 - MLT1E1-int LTR MaLR -484 887 696 1223 250 47 24 chr12 104760629 104761026 -39025429 - MLT1E1-int LTR MaLR -728 643 119 1119 218 132 41 chr12 104761026 104761389 -39025066 + MSTD LTR MaLR 1 396 0 1223 250 47 24 chr12 104761389 104761473 -39024982 - MLT1E1-int LTR MaLR -1252 119 38 1002 225 48 30 chr12 104761502 104761908 -39024547 - MLT1E1 LTR MaLR -40 614 151 25 0 0 0 chr12 104762143 104762168 -39024287 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 104762302 104762333 -39024122 + AT_rich Low_complexity Low_complexity 1 31 0 3058 134 36 33 chr12 104763531 104764136 -39022319 - MER4B LTR ERV1 -5 774 1 22 0 0 0 chr12 104764716 104764738 -39021717 + AT_rich Low_complexity Low_complexity 1 22 0 639 264 37 2 chr12 104764858 104765026 -39021429 + MIR SINE MIR 45 215 -47 3661 157 15 24 chr12 104765070 104765751 -39020704 + L1MB1 LINE L1 5494 6168 0 202 250 59 15 chr12 104765941 104766009 -39020446 + MIR SINE MIR 122 192 -70 1609 228 24 34 chr12 104766972 104767385 -39019070 - MLT1C LTR MaLR 0 467 59 1033 218 77 4 chr12 104767785 104768033 -39018422 - L1ME LINE L1 -506 5660 5395 216 67 0 0 chr12 104768108 104768138 -39018317 + (GA)n Simple_repeat Simple_repeat 1 30 0 194 279 82 0 chr12 104769134 104769195 -39017260 - L2 LINE L2 -96 3176 3111 556 255 96 0 chr12 104769207 104769364 -39017091 - MIR SINE MIR -6 256 85 1754 211 82 15 chr12 104769651 104770124 -39016331 - MLT1D LTR MaLR 0 505 1 495 340 50 35 chr12 104770485 104770826 -39015629 - L2 LINE L2 -811 2503 2158 3462 151 99 8 chr12 104772409 104773057 -39013398 - MER39 LTR ERV1 0 707 1 2590 194 28 69 chr12 104773113 104773914 -39012541 - MER39-int LTR ERV1 -148 6183 4131 558 103 13 0 chr12 104773914 104773992 -39012463 - AluSc SINE Alu -22 287 209 2122 213 70 79 chr12 104774092 104774891 -39011564 - LTR49-int LTR ERV1 -1459 4872 4085 2277 128 0 0 chr12 104774891 104775204 -39011251 + AluSq SINE Alu 1 313 0 2122 213 70 79 chr12 104775204 104775567 -39010888 - LTR49-int LTR ERV1 -2246 4085 3720 5601 171 15 6 chr12 104775569 104776631 -39009824 - L1MA6 LINE L1 -10 6290 5219 502 220 117 32 chr12 104776837 104777191 -39009264 - LTR49-int LTR ERV1 -2973 1963 1694 479 184 0 79 chr12 104777361 104777475 -39008980 - LTR49-int LTR ERV1 -2879 3452 3348 373 222 12 0 chr12 104777530 104777611 -39008844 - LTR49-int LTR ERV1 -2985 3346 3265 434 153 64 30 chr12 104777789 104777908 -39008547 - LTR49-int LTR ERV1 -3111 3220 1405 281 224 159 28 chr12 104778110 104778217 -39008238 - MER67D LTR ERV1 -296 218 98 274 231 88 22 chr12 104778249 104778340 -39008115 - LTR49-int LTR ERV1 -4062 874 778 263 239 26 68 chr12 104778528 104778645 -39007810 - LTR49-int LTR ERV1 -4342 3195 3084 289 148 0 19 chr12 104778651 104778705 -39007750 - LTR49-int LTR ERV1 -7047 490 438 1148 256 7 39 chr12 104778845 104779154 -39007301 - LTR49-int LTR ERV1 -4106 2225 1927 234 135 0 0 chr12 104779181 104779218 -39007237 + MER31A LTR ERV1 267 303 -182 1587 209 46 53 chr12 104779224 104779831 -39006624 - LTR49-int LTR ERV1 -4329 1905 283 384 275 140 51 chr12 104779849 104780085 -39006370 - LTR49-int LTR ERV1 -5709 622 366 3994 154 41 9 chr12 104780395 104781077 -39005378 - MER39 LTR ERV1 -3 704 1 189 0 0 0 chr12 104781766 104781787 -39004668 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2303 151 30 5 chr12 104782624 104783027 -39003428 - L1MA4 LINE L1 -36 6264 5852 26 30 0 0 chr12 104783090 104783123 -39003332 + AT_rich Low_complexity Low_complexity 1 33 0 9252 195 22 7 chr12 104783123 104786150 -39000305 - L1PA16 LINE L1 0 6166 3092 387 0 0 0 chr12 104786150 104786193 -39000262 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 478 232 202 17 chr12 104786204 104786437 -39000018 + L1ME4a LINE L1 5832 6107 -14 * 5089 228 23 22 chr12 104786419 104786535 -38999920 - L1PA16 LINE L1 -3041 3105 2991 1160 171 0 0 chr12 104786535 104786734 -38999721 + L1PA16 LINE L1 5968 6166 0 5089 228 23 22 chr12 104786734 104787706 -38998749 - L1PA16 LINE L1 -3155 2991 2012 2294 106 42 25 chr12 104787706 104788064 -38998391 + THE1B LTR MaLR 1 364 0 5089 228 23 22 chr12 104788064 104788364 -38998091 - L1PA16 LINE L1 -4134 2012 1714 2297 260 42 3 chr12 104788390 104789041 -38997414 - L1M4 LINE L1 -1830 4316 3641 225 188 29 43 chr12 104789037 104789106 -38997349 - L1MEc LINE L1 -5718 678 611 * 556 343 34 10 chr12 104789151 104789355 -38997100 - LTR16A LTR ERVL -2 448 240 622 320 81 29 chr12 104789532 104789876 -38996579 - L2 LINE L2 -1665 1649 1288 317 316 137 0 chr12 104789876 104789971 -38996484 - L2 LINE L2 -2127 1187 1080 400 290 7 7 chr12 104790161 104790316 -38996139 + L1MB2 LINE L1 3763 3917 -2229 195 216 0 0 chr12 104790473 104790510 -38995945 + MIR SINE MIR 120 156 -106 25 31 0 0 chr12 104790703 104790735 -38995720 + AT_rich Low_complexity Low_complexity 1 32 0 30 77 0 0 chr12 104791152 104791217 -38995238 + AT_rich Low_complexity Low_complexity 1 65 0 390 192 246 15 chr12 104791297 104791427 -38995028 - MIR3 SINE MIR -9 199 40 21 0 0 0 chr12 104792096 104792117 -38994338 + AT_rich Low_complexity Low_complexity 1 21 0 407 175 113 81 chr12 104792707 104792823 -38993632 - L1MC5 LINE L1 -30 7931 7807 2430 71 3 0 chr12 104792823 104793118 -38993337 - AluY SINE Alu -15 296 1 407 175 113 81 chr12 104793118 104793161 -38993294 - L1MC5 LINE L1 -154 7807 7767 21 0 0 0 chr12 104793172 104793193 -38993262 + AT_rich Low_complexity Low_complexity 1 21 0 1107 264 137 18 chr12 104793523 104793910 -38992545 - LTR16A LTR ERVL 0 450 18 608 200 194 13 chr12 104793985 104794166 -38992289 - MIR SINE MIR -16 246 30 202 303 92 37 chr12 104794571 104794680 -38991775 + MIR SINE MIR 25 139 -69 1857 214 88 8 chr12 104794974 104795442 -38991013 + MLT1D LTR MaLR 1 505 0 2662 123 26 19 chr12 104796161 104796582 -38989873 + MSTC LTR MaLR 1 424 -4 225 319 34 0 chr12 104796602 104796721 -38989734 + L1MB2 LINE L1 4487 4609 -1537 5160 157 34 8 chr12 104796724 104797850 -38988605 + L1MB2 LINE L1 5014 6164 -7 2823 199 29 44 chr12 104798274 104798932 -38987523 + MER82 DNA MER2_type 1 648 -5 1979 125 24 21 chr12 104799101 104799388 -38987067 + AluSx SINE Alu 1 288 -24 564 82 0 0 chr12 104799413 104799478 -38986977 + THE1C LTR MaLR 1 65 -310 3058 82 25 2 chr12 104799478 104799881 -38986574 + MLT2A2 LTR ERVL 1 412 -41 203 146 24 0 chr12 104799881 104799922 -38986533 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 237 139 0 0 chr12 104799923 104799966 -38986489 + (GA)n Simple_repeat Simple_repeat 1 43 0 244 53 105 0 chr12 104799966 104800004 -38986451 + MLT2A2 LTR ERVL 412 453 0 * 1276 131 10 24 chr12 104800004 104800200 -38986255 + THE1C LTR MaLR 62 254 -121 7443 110 198 40 chr12 104800209 104801573 -38984882 + THE1C-int LTR MaLR 1 1580 0 2232 127 24 8 chr12 104801573 104801942 -38984513 + THE1C LTR MaLR 1 375 0 2095 133 0 0 chr12 104801967 104802261 -38984194 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr12 104802265 104802292 -38984163 + AT_rich Low_complexity Low_complexity 1 27 0 1693 209 81 8 chr12 104802413 104802782 -38983673 + MSTD LTR MaLR 1 396 0 207 220 0 0 chr12 104802802 104802852 -38983603 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 242 293 10 10 chr12 104802999 104803098 -38983357 - HAL1b LINE L1 -7 1341 1243 236 321 123 28 chr12 104803327 104803433 -38983022 - MIR SINE MIR -80 182 67 188 318 163 23 chr12 104803497 104803626 -38982829 + L2 LINE L2 3167 3313 0 298 347 0 0 chr12 104804049 104804147 -38982308 + MIR SINE MIR 165 262 0 1460 193 70 142 chr12 104804435 104804615 -38981840 - MLT1D LTR MaLR 0 505 314 1707 123 0 4 chr12 104804615 104804851 -38981604 + AluSx SINE Alu 5 239 -73 1460 193 70 142 chr12 104804851 104805214 -38981241 - MLT1D LTR MaLR -191 314 1 3023 238 52 76 chr12 104805214 104806744 -38979711 - MLT1D-int LTR MaLR 0 1371 2 2150 193 87 2 chr12 104806750 104807211 -38979244 - MLT1D LTR MaLR -5 500 1 289 315 108 9 chr12 104807523 104807634 -38978821 - MIR3 SINE MIR -2 206 85 23 0 0 0 chr12 104807656 104807679 -38978776 + AT_rich Low_complexity Low_complexity 1 23 0 2295 89 13 0 chr12 104808454 104808757 -38977698 + AluSg SINE Alu 1 307 -3 504 278 57 32 chr12 104809302 104809550 -38976905 - L1ME4a LINE L1 -257 5864 5611 25 0 0 0 chr12 104812355 104812380 -38974075 + AT_rich Low_complexity Low_complexity 1 25 0 194 0 39 0 chr12 104812495 104812521 -38973934 + (TC)n Simple_repeat Simple_repeat 1 27 0 184 234 0 43 chr12 104812605 104812652 -38973803 + L2 LINE L2 3218 3262 -10 279 198 12 37 chr12 104813887 104813968 -38972487 + (TA)n Simple_repeat Simple_repeat 2 80 0 232 236 22 0 chr12 104814016 104814105 -38972350 + (TA)n Simple_repeat Simple_repeat 1 91 0 2144 125 0 0 chr12 104814182 104814479 -38971976 + AluSx SINE Alu 1 297 -15 1708 167 66 10 chr12 104815556 104815844 -38970611 - AluJo SINE Alu 0 312 9 197 265 96 48 chr12 104815862 104815945 -38970510 - L2 LINE L2 -37 3276 3190 619 319 156 41 chr12 104817599 104818210 -38968245 + HAL1 LINE L1 23 703 -1804 247 153 97 56 chr12 104818334 104818406 -38968049 + HAL1 LINE L1 961 1035 -1472 301 288 120 3 chr12 104818471 104818653 -38967802 + HAL1 LINE L1 1182 1381 -1126 737 243 57 40 chr12 104818962 104819209 -38967246 - MIR SINE MIR 0 262 12 216 0 0 0 chr12 104819786 104819810 -38966645 + (A)n Simple_repeat Simple_repeat 1 24 0 246 326 11 0 chr12 104819810 104819905 -38966550 + L2 LINE L2 2714 2809 -505 440 291 89 32 chr12 104820032 104820279 -38966176 + MIR SINE MIR 1 261 -1 584 296 109 13 chr12 104820453 104820683 -38965772 + MIR SINE MIR 11 262 0 204 286 186 0 chr12 104820796 104820866 -38965589 + L2 LINE L2 3186 3268 -4 276 323 25 44 chr12 104821359 104821517 -38964938 + L3 LINE CR1 1279 1433 -144 258 143 0 0 chr12 104821517 104821566 -38964889 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 302 101 15 chr12 104821627 104821778 -38964677 - MIR SINE MIR -62 146 17 2153 116 13 10 chr12 104822240 104822551 -38963904 - AluSx SINE Alu 0 312 1 501 309 98 67 chr12 104822591 104822761 -38963694 + L2 LINE L2 2678 2841 -472 5179 63 5 8 chr12 104822761 104823428 -38963027 + PABL_B LTR ERV1 3 667 0 501 309 98 67 chr12 104823428 104823546 -38962909 + L2 LINE L2 2841 2954 -359 1297 220 84 96 chr12 104823546 104824059 -38962396 + MLT1J LTR MaLR 3 509 -2 501 309 98 67 chr12 104824059 104824373 -38962082 + L2 LINE L2 2954 3304 -9 197 65 32 0 chr12 104824373 104824404 -38962051 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 23 0 0 0 chr12 104826321 104826344 -38960111 + AT_rich Low_complexity Low_complexity 1 23 0 215 306 0 28 chr12 104826416 104826488 -38959967 + GA-rich Low_complexity Low_complexity 2 71 0 225 121 0 0 chr12 104826541 104826574 -38959881 - MER3 DNA MER1_type -160 49 17 1912 195 49 89 chr12 104826788 104827374 -38959081 - L1ME1 LINE L1 -289 5877 5318 2287 58 0 31 chr12 104827374 104827667 -38958788 - AluY SINE Alu -15 296 13 1912 195 49 89 chr12 104827667 104827730 -38958725 - L1ME1 LINE L1 -848 5318 5254 2132 227 61 22 chr12 104827741 104828411 -38958044 - L1ME1 LINE L1 -1031 5115 4420 445 168 11 11 chr12 104828430 104828525 -38957930 - L1M4 LINE L1 -1628 4518 4424 962 161 83 5 chr12 104828605 104828746 -38957709 - L1MA9 LINE L1 -4 6308 6145 351 0 0 0 chr12 104828746 104828785 -38957670 + (TG)n Simple_repeat Simple_repeat 1 39 0 962 161 83 5 chr12 104828785 104828848 -38957607 - L1MA9 LINE L1 -167 6145 6088 201 74 0 0 chr12 104829080 104829107 -38957348 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 300 70 0 0 chr12 104829112 104829155 -38957300 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 10920 89 8 4 chr12 104829445 104831743 -38954712 + L1PA8 LINE L1 3855 6159 -13 198 71 0 0 chr12 104831747 104831775 -38954680 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 476 338 56 31 chr12 104831824 104832172 -38954283 + L2 LINE L2 2689 3099 -214 486 188 10 0 chr12 104832200 104832301 -38954154 + L1 LINE L1 4463 4564 -1582 17476 181 20 45 chr12 104832302 104839345 -38947110 + L1PA16 LINE L1 2 6867 -2 296 314 199 13 chr12 104839350 104839506 -38946949 + L2 LINE L2 3125 3309 -4 250 196 36 0 chr12 104839681 104839737 -38946718 - L2 LINE L2 -2966 348 291 556 264 124 22 chr12 104841297 104841475 -38944980 - MIR SINE MIR -21 241 46 1701 204 39 0 chr12 104841899 104842232 -38944223 - MER7A DNA MER2_type 0 346 3 1576 192 77 27 chr12 104842524 104842867 -38943588 - MSTD LTR MaLR 0 396 33 727 263 84 0 chr12 104842950 104843129 -38943326 + MER58A DNA MER1_type 31 224 0 262 302 19 22 chr12 104843509 104843638 -38942817 + MIR SINE MIR 19 144 -64 1185 157 0 30 chr12 104843802 104843892 -38942563 + MSTC LTR MaLR 237 328 -100 2623 96 6 8 chr12 104843892 104844257 -38942198 + THE1B LTR MaLR 1 364 0 1185 157 0 30 chr12 104844257 104844364 -38942091 + MSTC LTR MaLR 328 428 0 5156 253 58 28 chr12 104844366 104845774 -38940681 + MSTC-int LTR MaLR 2 1451 -284 369 0 0 0 chr12 104845783 104845824 -38940631 + (TA)n Simple_repeat Simple_repeat 1 41 0 2727 48 8 6 chr12 104845824 104846166 -38940289 - L1PA5 LINE L1 -8 6146 5801 589 165 25 8 chr12 104846272 104846393 -38940062 - L1MA9 LINE L1 -168 6144 6022 2102 119 0 11 chr12 104846432 104846751 -38939704 + AluSx SINE Alu 1 316 0 2187 258 133 12 chr12 104846836 104847964 -38938491 - L1MEc LINE L1 -1873 4342 2972 854 274 80 18 chr12 104847943 104848505 -38937950 - L1MEc LINE L1 -4938 1458 862 * 918 192 0 13 chr12 104848549 104848705 -38937750 - FRAM SINE Alu -23 153 1 979 325 31 49 chr12 104848715 104849432 -38937023 - L1MEc LINE L1 -5637 759 56 37 39 0 0 chr12 104849850 104849901 -38936554 + AT_rich Low_complexity Low_complexity 1 51 0 359 320 127 20 chr12 104852499 104852696 -38933759 + HAL1 LINE L1 1257 1474 -1033 369 317 103 72 chr12 104852834 104853194 -38933261 + HAL1b LINE L1 393 763 -585 314 263 84 89 chr12 104853201 104853581 -38932874 + L1ME4a LINE L1 4193 4570 -1576 188 301 118 11 chr12 104853639 104853732 -38932723 + L2 LINE L2 3208 3310 -3 673 295 128 14 chr12 104854248 104854807 -38931648 + L1ME4a LINE L1 5255 5875 -246 22 56 0 0 chr12 104854862 104854898 -38931557 + AT_rich Low_complexity Low_complexity 1 36 0 315 247 81 77 chr12 104855017 104855252 -38931203 + L1ME4a LINE L1 5629 5864 -257 2378 118 30 3 chr12 104855306 104855671 -38930784 + THE1C LTR MaLR 1 375 0 2115 97 0 4 chr12 104857072 104857351 -38929104 + AluSg SINE Alu 12 289 -21 1771 154 3 7 chr12 104858677 104858969 -38927486 - AluJb SINE Alu -11 301 11 302 330 34 0 chr12 104859024 104859142 -38927313 + HAL1 LINE L1 1453 1574 -933 11613 111 33 12 chr12 104859183 104859528 -38926927 + L1PB1 LINE L1 1 337 -6526 1607 193 24 0 chr12 104859528 104859824 -38926631 + AluSx SINE Alu 1 303 -9 11613 111 33 12 chr12 104859824 104861243 -38925212 + L1PB1 LINE L1 337 1801 -5062 * 12764 185 32 15 chr12 104861233 104862235 -38924220 + L1PB1 LINE L1 2947 3930 -2937 1999 141 33 43 chr12 104862235 104862603 -38923852 - THE1B LTR MaLR 0 364 1 12764 185 32 15 chr12 104862603 104865088 -38921367 + L1PB1 LINE L1 3930 6497 -370 2456 104 20 0 chr12 104865214 104865571 -38920884 + L1PB1 LINE L1 6499 6862 -5 755 242 23 116 chr12 104865598 104866017 -38920438 + MER57A LTR ERV1 13 403 0 3040 290 69 26 chr12 104866153 104867922 -38918533 - L1MEc LINE L1 -4391 2005 80 1568 171 21 36 chr12 104868008 104868288 -38918167 + AluJo SINE Alu 12 287 -25 288 351 101 14 chr12 104868687 104868835 -38917620 - L2 LINE L2 -246 3067 2907 1062 287 64 58 chr12 104868835 104869447 -38917008 + MLT1E LTR MaLR 1 608 15 1891 149 27 35 chr12 104869447 104869823 -38916632 - THE1C LTR MaLR -2 373 1 10311 114 42 6 chr12 104869823 104871347 -38915108 - THE1C-int LTR MaLR 0 1580 2 1062 287 64 58 chr12 104871347 104871461 -38914994 + MLT1E LTR MaLR 478 590 -3 2183 315 31 57 chr12 104871479 104871920 -38914535 - L2 LINE L2 -411 2903 2452 2297 125 0 0 chr12 104871920 104872232 -38914223 + AluSx SINE Alu 1 312 0 2183 315 31 57 chr12 104872232 104873059 -38913396 - L2 LINE L2 -862 2452 1668 1523 71 5 20 chr12 104873303 104873501 -38912954 - AluY SINE Alu -7 304 110 2217 117 0 10 chr12 104873602 104873900 -38912555 + AluSx SINE Alu 5 299 -13 24 0 0 0 chr12 104874171 104874195 -38912260 + AT_rich Low_complexity Low_complexity 1 24 0 560 298 153 21 chr12 104874196 104874438 -38912017 - L3 LINE CR1 -8 1569 1296 1931 80 19 0 chr12 104875078 104875341 -38911114 + L1PA10 LINE L1 5897 6164 -4 1365 117 0 0 chr12 104875349 104875555 -38910900 + L1PA16 LINE L1 5959 6164 -2 5757 167 22 13 chr12 104875764 104877368 -38909087 + L1MC2 LINE L1 4724 6343 -1 485 266 141 32 chr12 104877427 104877796 -38908659 + L1MC4a LINE L1 5980 6388 -1420 312 345 9 9 chr12 104877871 104877981 -38908474 + L1MC4 LINE L1 6448 6557 -1485 219 352 38 19 chr12 104878146 104878251 -38908204 + L2 LINE L2 2935 3041 -231 197 116 0 47 chr12 104878488 104878531 -38907924 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2196 152 31 0 chr12 104879742 104880130 -38906325 - MER44D DNA MER2_type 0 605 334 321 130 19 0 chr12 104880137 104880191 -38906264 - MER44D DNA MER2_type -650 55 1 6762 112 5 4 chr12 104880835 104881989 -38904466 - L1MA3 LINE L1 0 6305 5149 1350 174 0 9 chr12 104881993 104882205 -38904250 - AluJb SINE Alu -18 294 85 1298 172 8 4 chr12 104882205 104882461 -38903994 - L1MA3 LINE L1 -981 5165 4909 283 240 0 0 chr12 104882684 104882734 -38903721 + MER81 DNA DNA 1 50 -64 378 303 123 87 chr12 104882937 104883294 -38903161 + L2 LINE L2 2895 3264 -8 259 188 14 14 chr12 104883964 104884033 -38902422 + (CA)n Simple_repeat Simple_repeat 2 70 0 1253 307 121 3 chr12 104884279 104884959 -38901496 + HAL1 LINE L1 14 773 -1734 1149 273 150 33 chr12 104884949 104885787 -38900668 + HAL1 LINE L1 1511 2446 -61 * 23 0 0 0 chr12 104885787 104885810 -38900645 + AT_rich Low_complexity Low_complexity 1 23 0 1932 222 71 55 chr12 104885973 104886553 -38899902 + MLT1E LTR MaLR 1 589 -4 2134 184 29 39 chr12 104887813 104888323 -38898132 - MLT1D LTR MaLR 0 505 1 421 294 117 11 chr12 104888868 104889060 -38897395 - MIR SINE MIR -6 256 40 1252 117 31 0 chr12 104890736 104890932 -38895523 - L1PA13 LINE L1 -4 6159 5958 4530 95 13 1 chr12 104890932 104891624 -38894831 + L1PA13 LINE L1 5277 5976 -187 846 222 36 27 chr12 104891722 104891947 -38894508 + MLT1D LTR MaLR 1 227 -278 1881 242 33 87 chr12 104891947 104892659 -38893796 - MLT1D-int LTR MaLR -62 1673 661 2020 219 74 55 chr12 104892717 104893351 -38893104 - MLT1D-int LTR MaLR -712 659 14 1300 206 47 78 chr12 104893356 104893802 -38892653 - MLT1D LTR MaLR 0 505 74 2692 162 14 18 chr12 104893802 104894283 -38892172 + Tigger1 DNA MER2_type 2 482 -1936 1950 149 3 31 chr12 104894283 104894604 -38891851 + AluSx SINE Alu 1 312 0 2692 162 14 18 chr12 104894604 104894627 -38891828 + Tigger1 DNA MER2_type 482 504 -1914 2836 69 101 2 chr12 104894627 104895035 -38891420 + LTR7 LTR ERV1 1 448 -2 19140 91 13 21 chr12 104895037 104897345 -38889110 + HERVH LTR ERV1 1 2282 -5431 2486 50 10 0 chr12 104897345 104897645 -38888810 - AluY SINE Alu -8 303 1 19140 91 13 21 chr12 104897645 104898343 -38888112 + HERVH LTR ERV1 2282 2984 -4729 808 133 20 13 chr12 104898340 104898490 -38887965 + HERVH LTR ERV1 3140 3290 -4423 * 7318 120 17 3 chr12 104898480 104900182 -38886273 + HERVH LTR ERV1 3492 5149 -2564 1286 130 23 0 chr12 104900183 104900398 -38886057 + HERVH LTR ERV1 5600 5819 -1894 2197 110 48 5 chr12 104900398 104900772 -38885683 + HERVH LTR ERV1 7324 7713 0 2919 66 93 2 chr12 104900773 104901183 -38885272 + LTR7 LTR ERV1 2 448 -2 6144 97 23 28 chr12 104901183 104902164 -38884291 + Tigger1 DNA MER2_type 498 1474 -944 25372 130 13 14 chr12 104902164 104908386 -38878069 + L1PA8A LINE L1 4 6262 -184 791 207 0 0 chr12 104908386 104908531 -38877924 + Tigger1 DNA MER2_type 2274 2418 0 281 296 90 16 chr12 104908595 104908784 -38877671 - L1M4b LINE L1 -4714 2424 2222 1787 216 90 114 chr12 104908823 104909753 -38876702 - L1M4b LINE L1 -5125 1730 670 183 80 0 0 chr12 104909753 104909778 -38876677 + (CAAGT)n Simple_repeat Simple_repeat 5 29 0 1787 216 90 114 chr12 104909778 104910345 -38876110 - L1M4b LINE L1 -6185 670 91 1062 163 0 22 chr12 104910369 104910553 -38875902 - AluSp SINE Alu 0 313 134 2228 121 0 0 chr12 104910553 104910859 -38875596 - AluSx SINE Alu -1 311 6 414 0 0 0 chr12 104910859 104910905 -38875550 + (TG)n Simple_repeat Simple_repeat 2 47 0 288 197 136 0 chr12 104910908 104910974 -38875481 - L1M4b LINE L1 -6774 85 11 1830 219 70 13 chr12 104910987 104912188 -38874267 + L1MD3 LINE L1 4859 6155 -11 262 296 65 0 chr12 104912534 104912642 -38873813 + MLT1I LTR MaLR 21 135 -274 635 309 9 9 chr12 104912926 104913136 -38873319 - MIR SINE MIR -6 256 47 363 351 25 45 chr12 104913714 104913764 -38872691 + L2 LINE L2 1634 1683 -1631 2137 102 0 4 chr12 104913764 104914039 -38872416 - AluSq SINE Alu -39 274 1 363 351 25 45 chr12 104914039 104914347 -38872108 + L2 LINE L2 1683 1985 -1329 205 313 117 31 chr12 104914364 104914492 -38871963 + L2 LINE L2 2358 2496 -818 6952 171 26 9 chr12 104914567 104916089 -38870366 + L1 LINE L1 2992 4539 -1607 185 292 0 0 chr12 104966398 104966446 -38820009 - MIR3 SINE MIR -1 207 160 1625 228 24 34 chr12 104966507 104966920 -38819535 + MLT1C LTR MaLR 59 467 0 418 248 45 0 chr12 104967208 104967355 -38819100 - L1P LINE L1 -2296 3850 3695 2128 241 69 1 chr12 104968048 104968737 -38817718 + MER69 DNA AcHobo 27 2205 -321 1534 195 98 2 chr12 104968740 104969140 -38817315 - Charlie5 DNA MER1_type 0 2623 2186 206 250 59 15 chr12 104969913 104969981 -38816474 - MIR SINE MIR -70 192 122 3651 159 15 24 chr12 104970171 104970852 -38815603 - L1MB1 LINE L1 0 6168 5494 641 264 37 2 chr12 104970896 104971064 -38815391 - MIR SINE MIR -47 215 45 22 0 0 0 chr12 104971184 104971206 -38815249 + AT_rich Low_complexity Low_complexity 1 22 0 3058 134 36 33 chr12 104971786 104972391 -38814064 + MER4B LTR ERV1 1 774 -5 24 32 0 0 chr12 104973588 104973619 -38812836 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 104973754 104973779 -38812676 + AT_rich Low_complexity Low_complexity 1 25 0 277 339 39 24 chr12 104974356 104974483 -38811972 + L2 LINE L2 2953 3081 -191 245 309 95 16 chr12 104974521 104974647 -38811808 - L2 LINE L2 -7 3306 3171 254 359 51 0 chr12 104974670 104974748 -38811707 + L2 LINE L2 3115 3196 -76 345 75 0 0 chr12 104974771 104974824 -38811631 + (TG)n Simple_repeat Simple_repeat 1 53 0 447 254 176 51 chr12 104974863 104975081 -38811374 - L1ME4a LINE L1 -120 6001 5811 918 157 13 64 chr12 104975081 104975316 -38811139 - L1MA4 LINE L1 0 6300 6078 447 254 176 51 chr12 104975316 104975507 -38810948 - L1ME4a LINE L1 -310 5811 5541 1334 87 0 0 chr12 104976482 104976654 -38809801 + AluY SINE Alu 131 302 -9 2592 114 3 0 chr12 104978082 104978442 -38808013 + THE1B LTR MaLR 4 364 0 10641 99 15 58 chr12 104978442 104980088 -38806367 + THE1B-int LTR MaLR 1 1575 -5 2444 113 32 0 chr12 104980104 104980449 -38806006 + THE1B LTR MaLR 1 356 -8 1663 190 10 0 chr12 104980461 104980750 -38805705 - AluJb SINE Alu -20 292 1 2670 230 61 34 chr12 104982220 104983140 -38803315 - L1ME1 LINE L1 0 6235 5342 2840 16 0 3 chr12 104983140 104983459 -38802996 - AluYb8 SINE Alu 0 318 1 2670 230 61 34 chr12 104983459 104984171 -38802284 - L1ME1 LINE L1 -893 5342 4553 2357 153 30 9 chr12 104984171 104984609 -38801846 - L1MA4 LINE L1 -2 6298 5852 2670 230 61 34 chr12 104984609 104984632 -38801823 - L1ME1 LINE L1 -1682 4553 4532 30 27 0 0 chr12 104984668 104984705 -38801750 + AT_rich Low_complexity Low_complexity 1 37 0 9222 197 23 7 chr12 104984705 104987731 -38798724 - L1PA16 LINE L1 0 6166 3092 387 0 0 0 chr12 104987731 104987774 -38798681 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 461 236 202 17 chr12 104987785 104988018 -38798437 + L1ME4a LINE L1 5832 6107 -14 * 5146 228 22 22 chr12 104988000 104988116 -38798339 - L1PA16 LINE L1 -3041 3105 2990 1160 171 0 0 chr12 104988116 104988315 -38798140 + L1PA16 LINE L1 5968 6166 0 5146 228 22 22 chr12 104988315 104989289 -38797166 - L1PA16 LINE L1 -3156 2990 2012 2295 106 42 25 chr12 104989289 104989647 -38796808 + THE1B LTR MaLR 1 364 0 5146 228 22 22 chr12 104989647 104989947 -38796508 - L1PA16 LINE L1 -4133 2013 1714 2297 260 42 3 chr12 104989973 104990624 -38795831 - L1ME1 LINE L1 -1830 4385 3710 225 188 29 43 chr12 104990620 104990689 -38795766 - L1ME1 LINE L1 -5718 678 611 * 556 343 34 10 chr12 104990734 104990938 -38795517 - LTR16A LTR ERVL -2 448 240 622 320 81 29 chr12 104991115 104991459 -38794996 - L2 LINE L2 -1665 1649 1288 317 316 137 0 chr12 104991459 104991554 -38794901 - L2 LINE L2 -2127 1187 1080 400 290 7 7 chr12 104991744 104991899 -38794556 + L1M4 LINE L1 3763 3917 -2229 195 216 0 0 chr12 104992056 104992093 -38794362 + MIR SINE MIR 120 156 -106 25 31 0 0 chr12 104992286 104992318 -38794137 + AT_rich Low_complexity Low_complexity 1 32 0 30 77 0 0 chr12 104992735 104992800 -38793655 + AT_rich Low_complexity Low_complexity 1 65 0 390 192 246 15 chr12 104992880 104993010 -38793445 - MIR3 SINE MIR -9 199 40 21 0 0 0 chr12 104993679 104993700 -38792755 + AT_rich Low_complexity Low_complexity 1 21 0 407 175 113 81 chr12 104994290 104994406 -38792049 - L1MC5 LINE L1 -30 7931 7807 2455 68 3 0 chr12 104994406 104994701 -38791754 - AluY SINE Alu -15 296 1 407 175 113 81 chr12 104994701 104994744 -38791711 - L1MC5 LINE L1 -154 7807 7767 21 0 0 0 chr12 104994755 104994776 -38791679 + AT_rich Low_complexity Low_complexity 1 21 0 1107 264 137 18 chr12 104995106 104995493 -38790962 - LTR16A LTR ERVL 0 450 18 608 200 194 13 chr12 104995568 104995749 -38790706 - MIR SINE MIR -16 246 30 202 303 92 37 chr12 104996154 104996263 -38790192 + MIR SINE MIR 25 139 -69 1857 214 88 8 chr12 104996557 104997025 -38789430 + MLT1D LTR MaLR 1 505 0 1002 225 48 30 chr12 104997686 104998092 -38788363 + MLT1E1 LTR MaLR 151 614 -40 1223 250 47 24 chr12 104998121 104998205 -38788250 + MLT1E1-int LTR MaLR 38 119 -1252 1134 215 132 41 chr12 104998205 104998568 -38787887 - MSTD LTR MaLR 0 396 1 1223 250 47 24 chr12 104998568 104998965 -38787490 + MLT1E1-int LTR MaLR 119 643 -728 599 281 10 31 chr12 104999152 104999348 -38787107 + MLT1E1-int LTR MaLR 696 887 -484 670 210 141 125 chr12 104999428 104999819 -38786636 + MLT1E1-int LTR MaLR 877 1273 -98 197 324 40 27 chr12 104999819 104999893 -38786562 + L2 LINE L2 3185 3259 -13 32 51 0 38 chr12 105000602 105000681 -38785774 + AT_rich Low_complexity Low_complexity 1 76 0 350 292 15 23 chr12 105000746 105000876 -38785579 - L1ME LINE L1 -370 5800 5672 246 285 85 60 chr12 105000879 105001079 -38785376 + L1MC/D LINE L1 5613 5817 -1991 11128 137 20 18 chr12 105001255 105002197 -38784258 + Tigger1 DNA MER2_type 1 949 -1469 2458 132 3 21 chr12 105002197 105002577 -38783878 + THE1C LTR MaLR 1 373 -2 11128 137 20 18 chr12 105002577 105003499 -38782956 + Tigger1 DNA MER2_type 949 1868 -550 3347 130 18 30 chr12 105003695 105003921 -38782534 + Tigger1 DNA MER2_type 1863 2090 -328 2054 138 0 0 chr12 105003921 105004232 -38782223 + AluY SINE Alu 1 311 0 3347 130 18 30 chr12 105004232 105004568 -38781887 + Tigger1 DNA MER2_type 2090 2418 0 416 291 56 34 chr12 105005341 105005520 -38780935 + MIR SINE MIR 74 256 -6 4983 231 47 33 chr12 105005834 105008008 -38778447 + L1PA13 LINE L1 1 2411 -4386 7577 221 10 7 chr12 105008013 105009763 -38776692 + L1PA13 LINE L1 3188 4941 -1856 3764 140 67 0 chr12 105009763 105010376 -38776079 + L1PA15 LINE L1 5511 6164 -1 1049 325 68 24 chr12 105010918 105011376 -38775079 - MLT1K LTR MaLR -109 479 2 996 201 26 0 chr12 105011386 105011575 -38774880 + MER58A DNA MER1_type 7 200 -24 2065 130 14 35 chr12 105012044 105012390 -38774065 - MER2 DNA MER2_type -1 344 6 554 287 22 0 chr12 105012546 105012682 -38773773 - L2 LINE L2 0 3272 3134 619 355 58 59 chr12 105012706 105013370 -38773085 - L2 LINE L2 -2 3270 2551 450 94 0 0 chr12 105013487 105013551 -38772904 + (TCCCC)n Simple_repeat Simple_repeat 2 65 0 204 314 17 114 chr12 105014344 105014425 -38772030 - MER5A DNA MER1_type -4 185 128 2141 120 0 0 chr12 105014425 105014716 -38771739 - AluSx SINE Alu -15 297 7 204 314 17 114 chr12 105014716 105014809 -38771646 - MER5A DNA MER1_type -61 128 28 197 331 161 0 chr12 105014787 105014911 -38771544 - L3 LINE CR1 -830 747 604 * 654 199 99 12 chr12 105014948 105015119 -38771336 - LTR46 LTR ERV1 0 460 275 490 181 85 0 chr12 105015207 105015301 -38771154 - LTR46 LTR ERV1 -358 102 1 202 250 18 0 chr12 105015518 105015574 -38770881 + GA-rich Low_complexity Low_complexity 4 60 0 341 379 114 22 chr12 105015581 105015898 -38770557 - L3 LINE CR1 -1199 378 33 241 203 102 17 chr12 105016158 105016217 -38770238 + L2 LINE L2 3203 3266 -6 23 0 0 0 chr12 105016506 105016529 -38769926 + AT_rich Low_complexity Low_complexity 1 23 0 249 171 243 0 chr12 105016639 105016709 -38769746 - L2 LINE L2 -1 3312 3226 352 371 26 13 chr12 105017452 105017603 -38768852 - MER91A DNA MER1_type 0 196 44 324 299 80 43 chr12 105017768 105017955 -38768500 - MIR SINE MIR -48 214 21 313 123 31 0 chr12 105019265 105019330 -38767125 + (TA)n Simple_repeat Simple_repeat 1 67 0 216 377 24 12 chr12 105020094 105020261 -38766194 + L3b LINE CR1 1125 1293 -290 266 228 38 51 chr12 105020288 105020367 -38766088 + MER5B DNA MER1_type 101 178 0 214 307 93 47 chr12 105020553 105020703 -38765752 - MIR SINE MIR -74 188 32 21 36 0 0 chr12 105020925 105020953 -38765502 + AT_rich Low_complexity Low_complexity 1 28 0 349 320 0 14 chr12 105021226 105021246 -38765209 - L1MD2 LINE L1 -384 5975 5956 10220 203 64 49 chr12 105021246 105023197 -38763258 - L1MB7 LINE L1 -228 6454 4533 2089 112 25 0 chr12 105023197 105023483 -38762972 - AluSx SINE Alu -19 293 1 10220 203 64 49 chr12 105023483 105025189 -38761266 - L1MB7 LINE L1 -2149 4533 2745 652 170 15 44 chr12 105025189 105025324 -38761131 + FLAM_C SINE Alu 1 131 -2 10220 203 64 49 chr12 105025324 105025942 -38760513 - L1MB7 LINE L1 -3937 2745 2138 8189 145 21 6 chr12 105025955 105028441 -38758014 + L1MA1 LINE L1 3781 6301 -1 1524 106 18 9 chr12 105028664 105028890 -38757565 - L1MC1 LINE L1 -16 6317 6090 1368 243 76 13 chr12 105028919 105029314 -38757141 - L1MB7 LINE L1 -6104 438 19 2481 77 0 0 chr12 105030053 105030363 -38756092 + AluY SINE Alu 1 310 -1 219 212 0 30 chr12 105031142 105031208 -38755247 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 6322 169 14 27 chr12 105031357 105032404 -38754051 + L1PB3 LINE L1 3981 4987 -1167 2313 69 3 0 chr12 105032404 105032695 -38753760 + AluY SINE Alu 3 294 -17 6322 169 14 27 chr12 105032695 105033706 -38752749 + L1PB3 LINE L1 4987 6009 -145 391 86 0 0 chr12 105033710 105033768 -38752687 + L1PB3 LINE L1 6095 6152 -2 21 0 0 0 chr12 105034413 105034434 -38752021 + AT_rich Low_complexity Low_complexity 1 21 0 525 246 9 0 chr12 105034940 105035050 -38751405 + MER58B DNA MER1_type 199 309 -32 184 306 30 52 chr12 105035250 105035384 -38751071 - L2 LINE L2 -681 2633 2503 2003 145 3 0 chr12 105035388 105035691 -38750764 - AluSx SINE Alu -8 304 1 3606 157 3 65 chr12 105036419 105037243 -38749212 - L1P LINE L1 -801 5367 4597 440 265 154 6 chr12 105037272 105037434 -38749021 - MIR SINE MIR -64 198 13 340 275 50 50 chr12 105037443 105037625 -38748830 + MER5A DNA MER1_type 7 188 -1 2227 165 95 12 chr12 105037861 105038292 -38748163 - MLT1C LTR MaLR 0 467 1 348 263 132 21 chr12 105038882 105039129 -38747326 - L1MC/D LINE L1 -596 5525 5255 1936 199 68 33 chr12 105039895 105040113 -38746342 - MLT1D LTR MaLR 0 505 296 2073 112 44 52 chr12 105040113 105040480 -38745975 + THE1B LTR MaLR 1 364 0 1936 199 68 33 chr12 105040480 105040748 -38745707 - MLT1D LTR MaLR -209 296 2 557 296 143 34 chr12 105041152 105041211 -38745244 - L3 LINE CR1 -32 1545 1494 2409 82 3 0 chr12 105041211 105041514 -38744941 + AluY SINE Alu 1 304 -7 557 296 143 34 chr12 105041514 105041894 -38744561 - L3 LINE CR1 -83 1494 1058 352 365 68 15 chr12 105042235 105042501 -38743954 - L3 LINE CR1 -520 1057 778 14758 161 38 14 chr12 105042942 105043970 -38742485 + L1MA2 LINE L1 1383 2385 -5338 2182 119 7 7 chr12 105043970 105044280 -38742175 + AluSp SINE Alu 3 312 -1 14758 161 38 14 chr12 105044280 105047411 -38739044 + L1MA2 LINE L1 2385 5440 -2283 1485 108 0 51 chr12 105047411 105047625 -38738830 - AluSq SINE Alu -109 204 2 14758 161 38 14 chr12 105047625 105048298 -38738157 + L1MA2 LINE L1 5440 6096 -1627 2425 119 13 8 chr12 105048298 105048675 -38737780 - L1PA10 LINE L1 0 6168 5790 14758 161 38 14 chr12 105048675 105050028 -38736427 + L1MA2 LINE L1 6096 7719 -4 21 36 0 0 chr12 105050030 105050058 -38736397 + AT_rich Low_complexity Low_complexity 1 28 0 402 317 88 26 chr12 105050397 105050624 -38735831 + MIR SINE MIR 22 262 0 206 277 15 15 chr12 105050829 105050894 -38735561 - L2 LINE L2 0 3313 3249 263 340 48 27 chr12 105051064 105051211 -38735244 - L3 LINE CR1 -1104 473 324 * 562 340 75 24 chr12 105051176 105051511 -38734944 - L2 LINE L2 -595 2719 2368 2018 148 21 0 chr12 105051665 105051996 -38734459 - Tigger1 DNA MER2_type 0 2418 2081 6019 92 15 2 chr12 105051997 105053779 -38732676 - L1PA11 LINE L1 0 6174 4361 2631 124 5 0 chr12 105053798 105054200 -38732255 + L1P LINE L1 3909 4312 -1834 12929 117 35 9 chr12 105054200 105056206 -38730249 - Tigger1 DNA MER2_type -330 2088 32 30 45 0 0 chr12 105056524 105056568 -38729887 + AT_rich Low_complexity Low_complexity 1 44 0 288 328 143 12 chr12 105056773 105057017 -38729438 + L1ME4a LINE L1 5676 5951 -211 248 285 89 25 chr12 105057506 105057664 -38728791 + L1ME4a LINE L1 5936 6103 -18 393 212 51 68 chr12 105058016 105058134 -38728321 - L2 LINE L2 -1 3312 3197 581 257 55 108 chr12 105058299 105058606 -38727849 - L3 LINE CR1 -185 1392 1102 2351 164 16 13 chr12 105058871 105059250 -38727205 + MER47B DNA MER2_type 1 380 -38 263 313 50 12 chr12 105059322 105059402 -38727053 + L2 LINE L2 3140 3222 -50 259 64 21 21 chr12 105059403 105059450 -38727005 + (TA)n Simple_repeat Simple_repeat 2 48 0 197 161 0 0 chr12 105059459 105059490 -38726965 + L2 LINE L2 3273 3303 -10 756 293 77 40 chr12 105059679 105060058 -38726397 - MLT1L LTR MaLR -18 597 205 1581 175 46 0 chr12 105061850 105062113 -38724342 + AluJb SINE Alu 16 290 -22 942 260 78 0 chr12 105062269 105062511 -38723944 - MIR SINE MIR 0 262 2 198 329 12 37 chr12 105062967 105063049 -38723406 - L2 LINE L2 -14 3258 3179 767 296 41 71 chr12 105063642 105064258 -38722197 + L1MEd LINE L1 586 1182 -4937 544 271 91 13 chr12 105064434 105064784 -38721671 - MLT1G1 LTR MaLR 0 595 198 365 231 44 0 chr12 105064790 105064881 -38721574 - MLT1B LTR MaLR -78 312 218 326 284 0 11 chr12 105065106 105065201 -38721254 - MLT1G1-int LTR MaLR -1277 94 1 793 226 80 2 chr12 105065203 105065403 -38721052 - MLT1G1 LTR MaLR -2 593 302 365 250 141 55 chr12 105065499 105065627 -38720828 - MLT1G1 LTR MaLR -456 139 1 409 336 91 50 chr12 105066341 105066959 -38719496 - L2 LINE L2 -4 3268 2564 210 71 0 0 chr12 105067210 105067238 -38719217 + (GA)n Simple_repeat Simple_repeat 1 28 0 1383 184 20 134 chr12 105067267 105067672 -38718783 + MLT1B LTR MaLR 1 354 -36 1769 148 31 70 chr12 105067672 105068029 -38718426 - MER2 DNA MER2_type -1 343 1 1383 184 20 134 chr12 105068029 105068063 -38718392 + MLT1B LTR MaLR 354 390 0 240 143 0 0 chr12 105068659 105068701 -38717754 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 342 0 0 0 chr12 105069679 105069717 -38716738 + (CA)n Simple_repeat Simple_repeat 2 39 0 1153 289 88 102 chr12 105069970 105070305 -38716150 + L2 LINE L2 1298 1636 -1678 2213 63 0 0 chr12 105070305 105070574 -38715881 - AluY SINE Alu -8 303 35 1153 289 88 102 chr12 105070574 105071608 -38714847 + L2 LINE L2 1636 2648 -666 6918 175 19 0 chr12 105071935 105073311 -38713144 - L1P LINE L1 -1926 4220 2821 710 83 0 0 chr12 105073311 105073407 -38713048 + L1PA14 LINE L1 5852 5947 -214 1270 161 42 0 chr12 105073432 105073668 -38712787 + L1PA13 LINE L1 5913 6158 -5 2071 92 42 0 chr12 105073735 105074018 -38712437 - AluYa5 SINE Alu -16 295 1 210 255 0 0 chr12 105074819 105074870 -38711585 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 1968 116 4 0 chr12 105075792 105076067 -38710388 - AluSg SINE Alu -10 300 25 21 57 0 0 chr12 105076082 105076117 -38710338 + AT_rich Low_complexity Low_complexity 1 35 0 447 248 78 89 chr12 105076794 105077348 -38709107 + L1M4 LINE L1 2219 2766 -3380 681 168 60 12 chr12 105077639 105077806 -38708649 + Charlie5 DNA MER1_type 604 778 -1834 13849 195 32 24 chr12 105077806 105078556 -38707899 + L1PB3 LINE L1 7 750 -5461 378 0 0 0 chr12 105078556 105078598 -38707857 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 13849 195 32 24 chr12 105078598 105084013 -38702442 + L1PB3 LINE L1 750 6202 -9 2473 207 46 22 chr12 105084027 105084719 -38701736 + Charlie5 DNA MER1_type 760 1468 -1144 2931 160 79 104 chr12 105084724 105085018 -38701437 + Charlie5 DNA MER1_type 1735 2035 -589 3184 122 11 41 chr12 105085018 105085577 -38700878 - L1MA7 LINE L1 -4 6287 5746 2931 160 79 104 chr12 105085577 105086194 -38700261 + Charlie5 DNA MER1_type 2035 2623 -1 2128 241 69 1 chr12 105086197 105086886 -38699569 - MER69 DNA AcHobo -321 2205 27 544 198 72 0 chr12 105087211 105087322 -38699133 - MER94 DNA DNA 0 134 16 892 229 89 5 chr12 105087369 105087583 -38698872 - MIR SINE MIR 0 262 31 430 223 11 0 chr12 105087583 105087677 -38698778 + MER81 DNA DNA 1 95 -19 258 194 47 17 chr12 105087716 105087792 -38698663 - L1M4 LINE L1 -584 5582 5509 1659 271 92 18 chr12 105087804 105088347 -38698108 + MLT1E LTR MaLR 11 593 0 307 353 12 35 chr12 105088351 105088524 -38697931 - L1M4 LINE L1 -678 5486 5318 264 334 59 3 chr12 105088538 105088640 -38697815 - L1M4 LINE L1 -871 5275 5180 2029 137 7 7 chr12 105088640 105088946 -38697509 - AluSx SINE Alu -6 306 1 264 334 59 3 chr12 105088946 105089166 -38697289 - L1M4 LINE L1 -966 5180 4935 21 36 0 0 chr12 105089552 105089580 -38696875 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr12 105089738 105089774 -38696681 + AT_rich Low_complexity Low_complexity 1 36 0 2057 128 0 26 chr12 105089789 105090102 -38696353 - AluSx SINE Alu -7 305 1 282 329 43 14 chr12 105090116 105090326 -38696129 - L1P LINE L1 -1902 4244 4029 312 264 132 78 chr12 105090373 105090631 -38695824 - L1M4 LINE L1 -3755 2391 2120 355 337 64 14 chr12 105090750 105091094 -38695361 + L1ME LINE L1 3545 3905 -2241 536 295 138 26 chr12 105091279 105091743 -38694712 + L1ME LINE L1 5289 5804 -360 271 236 121 43 chr12 105092075 105092215 -38694240 - L1ME4a LINE L1 -14 6107 5957 224 255 157 20 chr12 105092588 105092690 -38693765 - L2 LINE L2 -18 3295 3180 240 35 0 0 chr12 105093378 105093407 -38693048 + (TG)n Simple_repeat Simple_repeat 1 29 0 1372 202 22 4 chr12 105094915 105095219 -38691236 - AluJo SINE Alu 0 309 1 44133 37 1 1 chr12 105095606 105101748 -38684707 - L1PA3 LINE L1 -3 6152 9 2037 187 60 0 chr12 105101980 105102382 -38684073 - MSTB LTR MaLR 0 426 1 1438 304 34 2 chr12 105102506 105102921 -38683534 - LTR16A LTR ERVL -5 445 18 341 373 99 26 chr12 105102937 105103580 -38682875 - L2 LINE L2 -2188 1126 437 14075 151 65 12 chr12 105103620 105103983 -38682472 - L1PB1 LINE L1 0 6867 6524 231 114 0 0 chr12 105103983 105104018 -38682437 + (TA)n Simple_repeat Simple_repeat 2 36 0 14075 151 65 12 chr12 105104018 105109575 -38676880 - L1PB1 LINE L1 -343 6524 636 1136 120 11 0 chr12 105109573 105109756 -38676699 - L1PB1 LINE L1 -6678 185 1 * 356 386 0 0 chr12 105110890 105111043 -38675412 + L2 LINE L2 2824 2976 -337 1537 232 96 75 chr12 105111335 105111739 -38674716 - MLT1F1 LTR MaLR 0 567 123 2455 77 0 0 chr12 105111739 105112049 -38674406 - AluY SINE Alu -1 310 1 1537 232 96 75 chr12 105112049 105112175 -38674280 - MLT1F1 LTR MaLR -444 123 1 221 347 42 0 chr12 105112535 105112607 -38673848 - L2 LINE L2 0 3272 3198 963 258 9 13 chr12 105112779 105113004 -38673451 + MER58A DNA MER1_type 1 224 0 344 238 167 16 chr12 105113184 105113236 -38673219 - MIR SINE MIR 0 262 219 240 86 0 0 chr12 105113236 105113271 -38673184 + (CA)n Simple_repeat Simple_repeat 1 35 0 344 238 167 16 chr12 105113271 105113344 -38673111 - MIR SINE MIR -43 219 118 393 366 30 17 chr12 105113411 105113643 -38672812 + L2 LINE L2 2836 3070 -202 1677 243 44 40 chr12 105114631 105115108 -38671347 + MLT2B1 LTR ERVL 1 482 -38 564 15 0 0 chr12 105115108 105115173 -38671282 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1677 243 44 40 chr12 105115173 105115213 -38671242 + MLT2B1 LTR ERVL 482 520 0 245 313 63 35 chr12 105115521 105115647 -38670808 - MIR SINE MIR -67 141 44 416 237 125 63 chr12 105115775 105116206 -38670249 + L1MEd LINE L1 737 1194 -4925 625 208 32 0 chr12 105116207 105116332 -38670123 + L2 LINE L2 2381 2509 -805 5814 136 41 17 chr12 105116350 105117606 -38668849 - L1MA8 LINE L1 -4 6287 4989 665 221 8 0 chr12 105117606 105117728 -38668727 - FLAM_A SINE Alu -10 123 1 5814 136 41 17 chr12 105117728 105118056 -38668399 - L1MA8 LINE L1 -1302 4989 4670 354 234 57 57 chr12 105118532 105118673 -38667782 + MIR SINE MIR 122 262 0 1791 179 3 7 chr12 105119035 105119337 -38667118 + AluJb SINE Alu 1 301 -11 1539 189 60 9 chr12 105119385 105119718 -38666737 - L1MC1 LINE L1 -7 6326 5977 645 172 9 17 chr12 105122728 105122844 -38663611 + FLAM_A SINE Alu 1 115 -18 24 67 0 0 chr12 105123038 105123083 -38663372 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr12 105123957 105123988 -38662467 + AT_rich Low_complexity Low_complexity 1 31 0 2982 226 67 33 chr12 105124776 105125926 -38660529 - L1ME2 LINE L1 -34 6130 4943 545 234 134 64 chr12 105125966 105126325 -38660130 - L1ME2 LINE L1 -1763 4383 4000 200 280 147 64 chr12 105126476 105126694 -38659761 - L2 LINE L2 -843 2471 2236 239 235 20 0 chr12 105126839 105126890 -38659565 - MIR SINE MIR -64 144 93 1286 237 13 22 chr12 105127671 105127987 -38658468 + MLT1A1 LTR MaLR 1 313 -52 21 0 0 0 chr12 105128620 105128641 -38657814 + AT_rich Low_complexity Low_complexity 1 21 0 265 182 104 0 chr12 105128673 105128750 -38657705 - MIR SINE MIR -61 201 117 331 219 55 14 chr12 105129159 105129232 -38657223 + MER5B DNA MER1_type 30 105 -73 189 300 67 0 chr12 105131033 105131093 -38655362 - L2 LINE L2 0 3272 3209 958 220 235 3 chr12 105131213 105131536 -38654919 + L2 LINE L2 2123 2520 -794 987 234 14 18 chr12 105131536 105131754 -38654701 + Charlie1 DNA MER1_type 1 217 -2544 458 244 55 0 chr12 105131758 105131885 -38654570 + Charlie1 DNA MER1_type 2624 2757 -4 874 335 107 6 chr12 105131885 105132556 -38653899 + L2 LINE L2 2509 3249 -64 214 150 50 0 chr12 105132556 105132596 -38653859 + CT-rich Low_complexity Low_complexity 3 44 0 1979 186 26 53 chr12 105132765 105133234 -38653221 - MSTB2 LTR MaLR -1 456 1 330 169 155 0 chr12 105133433 105133504 -38652951 + MER103 DNA DNA 3 84 -82 188 309 0 44 chr12 105133752 105133820 -38652635 - MIR SINE MIR -74 188 124 22 35 0 0 chr12 105134892 105134921 -38651534 + AT_rich Low_complexity Low_complexity 1 29 0 2276 238 50 45 chr12 105134991 105135057 -38651398 - L1MC4 LINE L1 -140 7902 7838 2514 58 0 3 chr12 105135057 105135367 -38651088 - AluY SINE Alu -2 309 1 2276 238 50 45 chr12 105135367 105135875 -38650580 - L1MC4 LINE L1 -204 7838 7334 258 32 0 0 chr12 105135875 105135906 -38650549 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2276 238 50 45 chr12 105135906 105136609 -38649846 - L1MC4 LINE L1 -708 7334 6469 1038 293 86 29 chr12 105137292 105137822 -38648633 - L2 LINE L2 0 3313 2750 1243 300 88 22 chr12 105137938 105138680 -38647775 - L2 LINE L2 -132 3181 2380 347 288 106 57 chr12 105139594 105139978 -38646477 + L1MC/D LINE L1 5099 5502 -664 26 0 0 0 chr12 105140231 105140257 -38646198 + AT_rich Low_complexity Low_complexity 1 26 0 2986 89 23 12 chr12 105140403 105140831 -38645624 - MER57B LTR ERV1 0 434 2 287 104 21 0 chr12 105140832 105140880 -38645575 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 321 26 0 0 chr12 105140900 105140938 -38645517 + (TG)n Simple_repeat Simple_repeat 2 39 0 4283 118 6 14 chr12 105141574 105142234 -38644221 - L1PA13 LINE L1 -21 6142 5488 307 385 20 78 chr12 105142662 105143020 -38643435 + L2 LINE L2 2855 3191 -81 1999 154 78 32 chr12 105143193 105143602 -38642853 - MSTA LTR MaLR 0 428 1 277 339 47 0 chr12 105144211 105144338 -38642117 - MIR SINE MIR -10 252 120 1548 207 3 7 chr12 105145374 105145669 -38640786 + AluJo SINE Alu 1 294 -18 3160 258 65 20 chr12 105145837 105146799 -38639656 + L1MD1 LINE L1 3240 4262 -1884 216 0 0 0 chr12 105146799 105146823 -38639632 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3160 258 65 20 chr12 105146823 105147001 -38639454 + L1MD1 LINE L1 4262 4431 -1715 997 281 59 35 chr12 105146956 105147583 -38638872 - L1M1 LINE L1 -4261 3304 2663 * 2198 252 52 10 chr12 105147583 105148257 -38638198 + L1MD1 LINE L1 4433 5134 -1012 5293 150 48 13 chr12 105148479 105149356 -38637099 + L1MD1 LINE L1 5137 6060 -182 2378 66 0 0 chr12 105149356 105149645 -38636810 + AluY SINE Alu 1 289 -22 5293 150 48 13 chr12 105149645 105149835 -38636620 + L1MD1 LINE L1 6060 6242 0 3660 54 13 2 chr12 105150513 105150975 -38635480 - L1PA7 LINE L1 -14 6140 5674 434 156 26 0 chr12 105151110 105151187 -38635268 - MER116 DNA Mariner -1 79 1 235 314 42 34 chr12 105152111 105152229 -38634226 + MIR SINE MIR 128 246 -16 266 296 72 40 chr12 105153063 105153313 -38633142 + HAL1 LINE L1 842 1099 -1408 329 230 0 70 chr12 105153333 105153433 -38633022 + L2 LINE L2 3220 3312 -1 364 245 19 44 chr12 105153530 105153689 -38632766 + L1M4 LINE L1 4748 4902 -1244 2383 120 6 0 chr12 105153772 105154122 -38632333 + L1PA16 LINE L1 5641 5992 -174 337 335 208 21 chr12 105154155 105154391 -38632064 + MER45C DNA AcHobo 133 412 -541 * 832 241 123 14 chr12 105154365 105154577 -38631878 + MER45C DNA AcHobo 697 931 -22 2265 64 0 0 chr12 105154643 105154951 -38631504 - AluY SINE Alu 0 308 1 1285 256 31 3 chr12 105154991 105155308 -38631147 - MER58B DNA MER1_type -15 326 1 6317 144 20 18 chr12 105155680 105157131 -38629324 - L1MA3 LINE L1 0 6305 4850 1466 212 19 76 chr12 105257148 105257487 -38528968 - MSTD LTR MaLR 0 396 84 1676 181 7 20 chr12 105257487 105257790 -38528665 - AluJo SINE Alu -11 301 3 1466 212 19 76 chr12 105257790 105257870 -38528585 - MSTD LTR MaLR -312 84 1 22 35 0 0 chr12 105259338 105259367 -38527088 + AT_rich Low_complexity Low_complexity 1 29 0 689 344 130 25 chr12 105259977 105260631 -38525824 + L3 LINE CR1 320 1042 -535 250 272 43 37 chr12 105260692 105260854 -38525601 - L1ME4a LINE L1 -75 6046 5884 808 314 101 44 chr12 105260884 105261388 -38525067 + L3 LINE CR1 1044 1576 -1 353 219 34 84 chr12 105261504 105261623 -38524832 - MIR SINE MIR -44 218 106 485 271 142 0 chr12 105261983 105262138 -38524317 + MIR SINE MIR 53 229 -33 21 0 0 0 chr12 105262674 105262695 -38523760 + AT_rich Low_complexity Low_complexity 1 21 0 417 298 167 45 chr12 105264858 105265347 -38521108 - L1M2 LINE L1 -5734 1115 564 532 274 36 6 chr12 105266049 105266217 -38520238 - MIR SINE MIR -81 181 9 587 246 150 21 chr12 105266268 105266455 -38520000 - MIR SINE MIR -12 250 40 234 348 43 0 chr12 105267353 105267445 -38519010 + MIR3 SINE MIR 111 206 -2 2213 118 0 0 chr12 105267545 105267833 -38518622 - AluSx SINE Alu -24 288 1 316 299 47 16 chr12 105268094 105268221 -38518234 - L3 LINE CR1 -1200 377 247 277 265 12 12 chr12 105269276 105269359 -38517096 + LTR16C LTR ERVL 408 490 -1 2193 122 3 0 chr12 105270130 105270425 -38516030 + AluSq SINE Alu 6 301 -12 353 320 33 50 chr12 105270707 105270888 -38515567 + HERVL LTR ERVL 1390 1567 -3429 1832 162 64 0 chr12 105270889 105271234 -38515221 - MLT1C LTR MaLR 0 467 101 262 229 71 14 chr12 105271325 105271395 -38515060 + HERVL LTR ERVL 1738 1811 -3185 461 267 33 0 chr12 105271994 105272114 -38514341 + MER5C DNA MER1_type 1 124 -200 299 353 7 0 chr12 105272266 105272419 -38514036 + HERVL LTR ERVL 3793 3946 -1708 838 342 21 11 chr12 105272449 105272829 -38513626 + HERVL LTR ERVL 4013 4396 -1258 1712 161 32 50 chr12 105272996 105273338 -38513117 + MER1B DNA MER1_type 4 339 0 634 240 65 0 chr12 105273649 105273803 -38512652 - MIR SINE MIR -98 164 1 26 30 0 0 chr12 105273934 105273967 -38512488 + AT_rich Low_complexity Low_complexity 1 33 0 478 258 114 3 chr12 105274358 105274490 -38511965 + MIR SINE MIR 6 149 -59 1373 168 28 28 chr12 105274869 105275191 -38511264 + MER33 DNA MER1_type 2 323 -1 2268 150 34 92 chr12 105275640 105276192 -38510263 - MLT2B1 LTR ERVL 0 520 1 2054 102 52 68 chr12 105276276 105276657 -38509798 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr12 105277012 105277059 -38509396 + AT_rich Low_complexity Low_complexity 1 47 0 1101 239 37 0 chr12 105277138 105277381 -38509074 + MIR SINE MIR 11 262 0 220 326 126 0 chr12 105277708 105277803 -38508652 - L2 LINE L2 -8 3264 3158 1832 170 122 6 chr12 105277845 105278198 -38508257 + MSTD LTR MaLR 3 396 0 239 395 0 0 chr12 105278211 105278325 -38508130 - L2 LINE L2 -290 2982 2869 294 350 36 43 chr12 105278419 105278559 -38507896 - L2 LINE L2 -233 3039 2901 259 204 0 20 chr12 105279035 105279084 -38507371 - MER96B DNA MER1_type? 0 417 370 622 206 67 6 chr12 105279104 105279269 -38507186 - MER96B DNA MER1_type? -242 175 1 256 206 59 59 chr12 105279269 105279337 -38507118 + L2 LINE L2 3204 3271 -1 1582 183 105 9 chr12 105279694 105280027 -38506428 + MLT1A1 LTR MaLR 1 365 0 491 240 97 34 chr12 105280061 105280236 -38506219 + L2 LINE L2 3083 3268 -45 401 254 148 0 chr12 105280350 105280472 -38505983 + L1MEd LINE L1 116 255 -5864 614 250 44 33 chr12 105280546 105280726 -38505729 + L1MEd LINE L1 394 575 -5544 457 235 15 15 chr12 105280726 105280862 -38505593 + LTR41 LTR ERVL 1 136 -637 23 33 0 0 chr12 105280918 105280948 -38505507 + AT_rich Low_complexity Low_complexity 1 30 0 1434 200 163 45 chr12 105281450 105281915 -38504540 + MLT2B1 LTR ERVL 1 520 0 360 262 56 95 chr12 105282246 105282498 -38503957 + MLT1K LTR MaLR 333 574 -14 878 198 0 18 chr12 105282817 105282984 -38503471 + FRAM SINE Alu 2 165 -1 32 0 0 0 chr12 105283015 105283047 -38503408 + AT_rich Low_complexity Low_complexity 1 32 0 2661 7 0 0 chr12 105283434 105283758 -38502697 - AluYb8 SINE Alu 0 324 1 11258 28 0 0 chr12 105284441 105285779 -38500676 - L1PA4 LINE L1 -755 5391 4054 6353 33 3 1 chr12 105285779 105286533 -38499922 + L1PA4 LINE L1 5390 6152 -3 253 105 0 0 chr12 105286751 105286789 -38499666 - L1P5 LINE L1 -437 5714 5677 226 204 0 0 chr12 105286785 105286834 -38499621 + L1PB1 LINE L1 6095 6143 -8 * 364 342 7 7 chr12 105288187 105288336 -38498119 + GA-rich Low_complexity Low_complexity 1 149 0 180 246 16 66 chr12 105288704 105288765 -38497690 + L3b LINE CR1 1306 1363 -220 397 292 88 0 chr12 105289217 105289354 -38497101 + MIR3 SINE MIR 4 152 -56 349 286 71 21 chr12 105289511 105289651 -38496804 - MIR3 SINE MIR -10 198 52 5465 165 20 22 chr12 105290690 105291702 -38494753 - L1PA16 LINE L1 -9 6157 5145 186 43 0 0 chr12 105291702 105291725 -38494730 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1845 148 0 0 chr12 105291733 105291997 -38494458 - AluSx SINE Alu -48 264 1 5465 165 20 22 chr12 105291997 105292567 -38493888 - L1PA16 LINE L1 -1028 5138 4572 2067 108 28 0 chr12 105292619 105292906 -38493549 + AluSg SINE Alu 1 295 -15 362 346 107 19 chr12 105294554 105294713 -38491742 - L2 LINE L2 -1 3271 3099 266 339 69 49 chr12 105294763 105295008 -38491447 - L2 LINE L2 -700 2614 2365 789 158 12 36 chr12 105295085 105295221 -38491234 + L1 LINE L1 4577 4710 -1436 1757 175 0 38 chr12 105295221 105295541 -38490914 + AluJb SINE Alu 2 309 -3 789 158 12 36 chr12 105295541 105295569 -38490886 + L1 LINE L1 4710 4737 -1409 1442 224 68 36 chr12 105295576 105296080 -38490375 + L1MA9 LINE L1 5780 6299 -13 1096 187 26 90 chr12 105296066 105296534 -38489921 + L1ME1 LINE L1 5426 5835 -331 * 256 213 0 0 chr12 105296659 105296706 -38489749 + MER63 DNA MER1_type 680 726 -335 911 225 121 61 chr12 105296759 105297117 -38489338 + HAL1 LINE L1 732 1138 -1369 1788 146 82 0 chr12 105297117 105297397 -38489058 + AluSg SINE Alu 1 303 -7 911 225 121 61 chr12 105297397 105297608 -38488847 + HAL1 LINE L1 1138 1335 -1172 2039 118 0 50 chr12 105297620 105297760 -38488695 + AluSx SINE Alu 1 146 -166 2402 69 7 3 chr12 105297760 105298064 -38488391 + AluY SINE Alu 1 305 -6 2039 118 0 50 chr12 105298064 105298246 -38488209 + AluSx SINE Alu 146 307 -5 23 0 0 0 chr12 105298263 105298286 -38488169 + AT_rich Low_complexity Low_complexity 1 23 0 343 272 140 70 chr12 105298747 105299148 -38487307 + L1ME LINE L1 4560 4988 -1158 1086 273 224 0 chr12 105299149 105299560 -38486895 + L2 LINE L2 2804 3306 -7 747 262 65 32 chr12 105299560 105299902 -38486553 + L1ME LINE L1 5355 5707 -414 753 257 73 60 chr12 105300254 105300690 -38485765 + L1MC/D LINE L1 5288 5729 -392 949 87 0 8 chr12 105300707 105300833 -38485622 + AluSq/x SINE Alu 11 135 -178 1909 157 0 0 chr12 105300833 105301126 -38485329 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr12 105301163 105301187 -38485268 + AT_rich Low_complexity Low_complexity 1 24 0 236 339 24 0 chr12 105301224 105301351 -38485104 + L1MC/D LINE L1 5772 5901 -1907 387 248 59 10 chr12 105301352 105301453 -38485002 - MIR SINE MIR -32 230 125 321 258 0 0 chr12 105301962 105302024 -38484431 - L2 LINE L2 -2905 409 348 1894 129 6 60 chr12 105303525 105303842 -38482613 + AluJb SINE Alu 3 302 -10 1447 129 97 0 chr12 105303843 105304122 -38482333 - MER33 DNA MER1_type -18 306 1 1006 110 0 37 chr12 105304190 105304354 -38482101 + L1PA11 LINE L1 6017 6174 0 419 266 0 0 chr12 105304520 105304599 -38481856 + MER58A DNA MER1_type 1 79 -28 1836 213 75 21 chr12 105305304 105305783 -38480672 + MLT1D LTR MaLR 1 505 0 814 290 37 16 chr12 105305882 105306127 -38480328 - MIR SINE MIR -10 252 3 461 298 121 63 chr12 105306131 105306175 -38480280 - L1ME LINE L1 -682 5508 5468 3580 137 41 8 chr12 105306175 105306789 -38479666 - L1PB4 LINE L1 -2 6154 5521 461 298 121 63 chr12 105306789 105307489 -38478966 - L1ME LINE L1 -722 5468 4702 721 214 0 0 chr12 105307489 105307615 -38478840 + FLAM_A SINE Alu 2 127 -6 461 298 121 63 chr12 105307615 105307726 -38478729 - L1ME LINE L1 -1488 4702 4599 404 328 65 20 chr12 105307727 105307928 -38478527 + MIR SINE MIR 48 257 -5 24 0 0 0 chr12 105307965 105307989 -38478466 + AT_rich Low_complexity Low_complexity 1 24 0 714 300 5 0 chr12 105308012 105308202 -38478253 - MIR SINE MIR -27 235 45 1674 248 216 36 chr12 105308339 105309131 -38477324 - L2 LINE L2 0 3313 2377 257 302 129 15 chr12 105309160 105309362 -38477093 - L1ME LINE L1 -1952 4263 4039 1006 237 55 0 chr12 105309386 105309605 -38476850 + MIR SINE MIR 6 236 -26 283 323 116 27 chr12 105309622 105310294 -38476161 - L1ME LINE L1 -2187 4028 3297 2559 122 84 7 chr12 105310769 105311211 -38475244 + MER31A LTR ERV1 1 476 -9 339 194 69 0 chr12 105311464 105311536 -38474919 - L1PA11 LINE L1 -5 6169 6093 11374 120 21 1 chr12 105311720 105314306 -38472149 - L1PA11 LINE L1 -87 6087 3455 317 322 104 48 chr12 105314361 105314696 -38471759 - L1ME LINE L1 -3876 2520 2167 553 167 108 0 chr12 105315390 105315492 -38470963 + MER39 LTR ERV1 1 113 -594 923 209 12 0 chr12 105315492 105315664 -38470791 - FRAM SINE Alu -3 173 1 3357 125 24 6 chr12 105315681 105316221 -38470234 + MER39 LTR ERV1 70 707 0 739 282 71 4 chr12 105316843 105317154 -38469301 + L1ME3A LINE L1 4702 5048 -1098 2408 129 42 10 chr12 105317191 105317594 -38468861 + L1PA16 LINE L1 5750 6165 -1 243 93 47 0 chr12 105317644 105317687 -38468768 + L1MC4 LINE L1 6658 6702 -1340 * 2211 233 149 6 chr12 105317682 105318378 -38468077 + L1ME3A LINE L1 5375 6170 0 342 0 0 0 chr12 105318675 105318713 -38467742 + (TC)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr12 105318763 105318802 -38467653 + AT_rich Low_complexity Low_complexity 1 39 0 314 227 71 71 chr12 105320330 105320484 -38465971 - L2 LINE L2 0 3313 3160 524 146 68 29 chr12 105320877 105320980 -38465475 - MER99 DNA DNA -5 823 717 14465 189 23 9 chr12 105320980 105322390 -38464065 + L1PB1 LINE L1 9 1397 -5470 2212 71 0 7 chr12 105322390 105322705 -38463750 - AluY SINE Alu 0 313 1 14465 189 23 9 chr12 105322705 105327381 -38459074 + L1PB1 LINE L1 1397 6823 -44 3429 216 18 19 chr12 105327402 105328029 -38458426 - MER99 DNA DNA -86 742 115 2380 96 0 3 chr12 105328029 105328341 -38458114 - AluSx SINE Alu -1 311 1 3429 216 18 19 chr12 105328341 105328455 -38458000 - MER99 DNA DNA -713 115 2 283 357 7 42 chr12 105328871 105329014 -38457441 - L2 LINE L2 -550 2764 2627 1087 259 107 27 chr12 105329278 105329680 -38456775 + MER57B LTR ERV1 1 434 0 2218 117 0 0 chr12 105331827 105332127 -38454328 + AluY SINE Alu 1 300 -11 2089 106 3 39 chr12 105332183 105332495 -38453960 + AluSc SINE Alu 1 301 -8 429 325 82 15 chr12 105332993 105333199 -38453256 + MIR SINE MIR 23 242 -20 366 229 25 25 chr12 105334491 105334609 -38451846 + LTR67 LTR ERVL 432 549 -8 997 268 85 37 chr12 105335727 105335764 -38450691 + L1ME3A LINE L1 3545 3579 -2567 1994 144 35 44 chr12 105335764 105336131 -38450324 - THE1B LTR MaLR 0 364 1 997 268 85 37 chr12 105336131 105336188 -38450267 + L1ME3A LINE L1 3579 3632 -2514 198 0 0 0 chr12 105336188 105336210 -38450245 + (TTG)n Simple_repeat Simple_repeat 2 23 0 997 268 85 37 chr12 105336210 105336551 -38449904 + L1ME3A LINE L1 3632 4002 -2144 501 310 82 0 chr12 105336565 105336749 -38449706 + L1ME3A LINE L1 5961 6159 -11 1645 248 164 18 chr12 105336751 105337169 -38449286 + L1ME3A LINE L1 4012 4368 -1778 2074 127 7 0 chr12 105337169 105337468 -38448987 + AluSq SINE Alu 1 301 -12 1645 248 164 18 chr12 105337468 105337785 -38448670 + L1ME3A LINE L1 4368 4637 -1509 2282 82 3 26 chr12 105337785 105338090 -38448365 + AluSp SINE Alu 1 298 -15 1645 248 164 18 chr12 105338090 105338297 -38448158 + L1ME3A LINE L1 4637 5093 -1053 5781 166 24 4 chr12 105338331 105340331 -38446124 - L1PA16 LINE L1 0 6166 4126 403 222 256 17 chr12 105340449 105340625 -38445830 + L1ME3A LINE L1 5429 5646 -516 619 233 27 0 chr12 105340665 105340815 -38445640 + L1ME3A LINE L1 6004 6157 -13 713 179 29 21 chr12 105341399 105341539 -38444916 + MIR SINE MIR 84 224 -38 355 331 67 47 chr12 105341569 105341928 -38444527 - HAL1 LINE L1 -1658 849 484 486 256 80 130 chr12 105341928 105342058 -38444397 - L3 LINE CR1 -313 1264 1129 1961 169 65 23 chr12 105342058 105342394 -38444061 + MLT2D LTR ERVL 1 358 -56 180 0 0 0 chr12 105342394 105342414 -38444041 + (TC)n Simple_repeat Simple_repeat 1 20 0 1961 169 65 23 chr12 105342414 105342474 -38443981 + MLT2D LTR ERVL 358 414 0 486 256 80 130 chr12 105342474 105342928 -38443527 - L3 LINE CR1 -448 1129 709 485 322 64 10 chr12 105343108 105343310 -38443145 + MIR SINE MIR 39 251 -11 449 290 22 77 chr12 105344139 105344322 -38442133 - L2 LINE L2 -4 3268 3096 194 250 103 0 chr12 105344362 105344430 -38442025 - L3 LINE CR1 -3 1574 1500 274 339 124 65 chr12 105344525 105344832 -38441623 - L2 LINE L2 0 3272 2948 2148 96 7 30 chr12 105344834 105345137 -38441318 + AluSx SINE Alu 1 296 -16 545 255 254 61 chr12 105345237 105346068 -38440387 - HAL1 LINE L1 -2 2505 1515 1654 159 27 10 chr12 105346172 105346473 -38439982 + AluJb SINE Alu 3 308 -4 1719 261 111 77 chr12 105346817 105347055 -38439400 - HAL1 LINE L1 -1109 1398 1170 407 70 0 0 chr12 105347055 105347112 -38439343 - L1PA10 LINE L1 -10 6158 6102 1719 261 111 77 chr12 105347112 105348076 -38438379 - HAL1 LINE L1 -1337 1170 154 402 320 0 10 chr12 105348351 105348451 -38438004 + MIR SINE MIR 3 101 -161 847 251 19 0 chr12 105348603 105348810 -38437645 - MIR SINE MIR -48 214 4 251 286 26 0 chr12 105349366 105349443 -38437012 + L1ME1 LINE L1 69 147 -5923 3406 223 79 40 chr12 105350049 105350959 -38435496 + L1ME1 LINE L1 391 1338 -4742 1532 92 9 9 chr12 105350959 105351188 -38435267 + L1PB1 LINE L1 5916 6144 -7 3406 223 79 40 chr12 105351188 105351589 -38434866 + L1ME1 LINE L1 1338 1722 -4358 3457 216 48 38 chr12 105351601 105352027 -38434428 + L1ME1 LINE L1 4751 5171 -929 2255 98 0 0 chr12 105352027 105352313 -38434142 + AluSg SINE Alu 1 286 -24 3457 216 48 38 chr12 105352313 105352451 -38434004 + L1ME1 LINE L1 5171 5306 -794 537 114 0 0 chr12 105352451 105352530 -38433925 + MADE1 DNA Mariner 2 80 0 3457 216 48 38 chr12 105352530 105353282 -38433173 + L1ME1 LINE L1 5306 6075 -25 21 71 0 0 chr12 105353289 105353331 -38433124 + AT_rich Low_complexity Low_complexity 1 42 0 250 281 70 35 chr12 105353347 105353461 -38432994 + MIR SINE MIR 53 170 -92 293 341 41 59 chr12 105353498 105353668 -38432787 + L2 LINE L2 2932 3098 -174 2262 65 35 10 chr12 105353702 105353992 -38432463 - AluY SINE Alu -12 299 3 3100 129 2 6 chr12 105353996 105354478 -38431977 - L1PB3 LINE L1 0 6154 5675 1210 121 30 19 chr12 105354478 105354703 -38431752 - L1MC/D LINE L1 -587 5567 5344 213 175 0 0 chr12 105354917 105354957 -38431498 + (TA)n Simple_repeat Simple_repeat 1 40 0 1476 164 47 3 chr12 105355588 105355886 -38430569 + MER33 DNA MER1_type 1 311 -13 216 326 111 26 chr12 105355914 105356104 -38430351 + MIR SINE MIR 2 207 -55 261 0 0 0 chr12 105357361 105357390 -38429065 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 313 39 67 chr12 105357563 105357742 -38428713 - MIR SINE MIR -43 219 46 278 238 24 24 chr12 105358289 105358373 -38428082 - MER5B DNA MER1_type -89 89 6 2500 166 13 22 chr12 105358536 105358960 -38427495 + MLT2C2 LTR ERVL 2 423 -41 468 0 0 0 chr12 105358960 105359012 -38427443 + (TG)n Simple_repeat Simple_repeat 2 53 0 2500 166 13 22 chr12 105359012 105359046 -38427409 + MLT2C2 LTR ERVL 423 456 -8 182 355 43 0 chr12 105359054 105359147 -38427308 - MIR SINE MIR -7 255 159 644 248 12 0 chr12 105359353 105359514 -38426941 - L1MB7 LINE L1 -204 5980 5818 614 196 84 38 chr12 105359529 105359703 -38426752 - L1MB7 LINE L1 -540 5640 5461 263 70 0 23 chr12 105359703 105359746 -38426709 + (TG)n Simple_repeat Simple_repeat 2 43 0 614 196 84 38 chr12 105359746 105359777 -38426678 - L1MB7 LINE L1 -719 5461 5433 800 147 0 31 chr12 105359778 105359907 -38426548 - FLAM_C SINE Alu -18 125 1 653 148 8 0 chr12 105359907 105360029 -38426426 - L1MB7 LINE L1 -737 5441 5319 803 201 50 53 chr12 105360066 105360369 -38426086 + L1MC5 LINE L1 7581 7882 -79 2298 100 0 0 chr12 105360390 105360690 -38425765 - AluY SINE Alu -11 300 1 1950 276 124 14 chr12 105360711 105361444 -38425011 + HAL1 LINE L1 12 825 -1682 2472 60 0 3 chr12 105361516 105361817 -38424638 + AluY SINE Alu 1 300 -11 1879 146 0 0 chr12 105362052 105362340 -38424115 - L1PA16 LINE L1 -187 5979 5692 329 281 0 0 chr12 105362343 105362425 -38424030 + HAL1 LINE L1 816 897 -1610 764 179 0 8 chr12 105362524 105362658 -38423797 + AluJ SINE Alu 1 133 -169 429 70 0 0 chr12 105362661 105362718 -38423737 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 207 0 0 0 chr12 105362717 105362740 -38423715 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 * 1271 126 0 0 chr12 105362743 105362917 -38423538 + AluJ SINE Alu 130 303 -9 929 179 89 0 chr12 105362925 105363115 -38423340 + MER47A DNA MER2_type 1 207 -159 34 0 0 0 chr12 105363144 105363178 -38423277 + AT_rich Low_complexity Low_complexity 1 34 0 1249 152 54 0 chr12 105363203 105363407 -38423048 + MER47A DNA MER2_type 152 366 0 1173 219 0 8 chr12 105363407 105363649 -38422806 + MLT2D LTR ERVL 1 240 -174 459 122 184 0 chr12 105363654 105363752 -38422703 - MLT2B1 LTR ERVL 0 520 405 264 269 9 83 chr12 105363761 105363869 -38422586 + MLT2B1 LTR ERVL 421 520 0 617 193 58 12 chr12 105363910 105364081 -38422374 + HAL1 LINE L1 1209 1387 -1120 2730 170 23 40 chr12 105364355 105364931 -38421524 - L1MA9 LINE L1 -37 6275 5710 23 33 0 0 chr12 105366227 105366257 -38420198 + AT_rich Low_complexity Low_complexity 1 30 0 312 198 74 0 chr12 105366416 105366497 -38419958 + MIR SINE MIR 176 262 0 246 62 0 0 chr12 105367212 105367244 -38419211 + (ATG)n Simple_repeat Simple_repeat 3 34 0 323 253 71 40 chr12 105367329 105367428 -38419027 - MIR3 SINE MIR -38 170 69 189 245 0 0 chr12 105367429 105367478 -38418977 + (ATGGTG)n Simple_repeat Simple_repeat 5 53 0 754 287 19 5 chr12 105367493 105367702 -38418753 - MIR SINE MIR -48 214 3 1947 118 7 0 chr12 105368288 105368560 -38417895 - AluSx SINE Alu -14 298 25 487 129 0 0 chr12 105368685 105368755 -38417700 - AluS SINE Alu -242 71 2 2344 96 0 0 chr12 105368783 105369085 -38417370 + AluSg SINE Alu 1 302 -8 336 305 31 61 chr12 105369162 105369355 -38417100 - MIR SINE MIR -58 150 16 323 231 22 44 chr12 105370136 105370227 -38416228 + MLT1K LTR MaLR 45 133 -455 456 297 8 0 chr12 105370363 105370481 -38415974 + MIR SINE MIR 29 147 -115 * 772 287 115 56 chr12 105370479 105371112 -38415343 - L2 LINE L2 0 3313 2649 311 269 174 12 chr12 105371134 105371301 -38415154 - L2 LINE L2 -813 2501 2308 1870 122 72 0 chr12 105371312 105371477 -38414978 - AluSx SINE Alu -14 298 104 240 35 0 0 chr12 105371477 105371506 -38414949 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1870 122 72 0 chr12 105371506 105371618 -38414837 - AluSx SINE Alu -208 104 1 326 227 67 0 chr12 105371629 105371704 -38414751 + MIR SINE MIR 183 262 0 831 183 180 0 chr12 105372114 105372246 -38414209 - MER33 DNA MER1_type -2262 362 255 1072 137 5 43 chr12 105372246 105372457 -38413998 + L1PB1 LINE L1 5947 6149 -2 831 183 180 0 chr12 105372457 105372583 -38413872 - MER33 DNA MER1_type -2369 255 3 2093 137 0 0 chr12 105372752 105373051 -38413404 - AluSx SINE Alu -13 299 1 288 347 11 0 chr12 105373278 105373373 -38413082 - MER5B DNA MER1_type -82 96 1 2254 169 13 0 chr12 105374107 105374492 -38411963 - MLT1B LTR MaLR 0 390 1 191 325 149 18 chr12 105374612 105374726 -38411729 + MER5B DNA MER1_type 1 129 -49 228 305 179 13 chr12 105375356 105375507 -38410948 - L2 LINE L2 -5 3308 3133 234 0 0 0 chr12 105376373 105376399 -38410056 + (A)n Simple_repeat Simple_repeat 1 26 0 1727 176 7 7 chr12 105376858 105377159 -38409296 + AluJb SINE Alu 1 301 -11 196 333 83 0 chr12 105377220 105377292 -38409163 - L3 LINE CR1 -52 1525 1448 3414 168 65 34 chr12 105377298 105377778 -38408677 - L1MA9 LINE L1 -38 6274 5761 450 0 0 0 chr12 105377778 105377828 -38408627 + (TG)n Simple_repeat Simple_repeat 2 51 0 3414 168 65 34 chr12 105377828 105378103 -38408352 - L1MA9 LINE L1 -551 5761 5496 1125 145 53 5 chr12 105378113 105378320 -38408135 - L1MA9 LINE L1 -1312 4834 4618 1870 148 25 40 chr12 105378608 105378651 -38407804 + L1MB8 LINE L1 5785 5827 -351 2166 84 63 0 chr12 105378651 105378938 -38407517 + AluSx SINE Alu 1 305 -7 1870 148 25 40 chr12 105378938 105379294 -38407161 + L1MB8 LINE L1 5827 6178 0 201 284 86 0 chr12 105379474 105379555 -38406900 - MIR SINE MIR 0 262 175 415 292 110 6 chr12 105379574 105379741 -38406714 - MIR SINE MIR -43 219 37 755 192 89 33 chr12 105380200 105380471 -38405984 - L1MC5 LINE L1 -36 7925 7640 1550 148 49 95 chr12 105380544 105380915 -38405540 - MER93b LTR ERV1 0 373 19 2303 114 0 0 chr12 105380915 105381212 -38405243 - AluSx SINE Alu -15 297 1 1550 148 49 95 chr12 105381212 105381231 -38405224 - MER93b LTR ERV1 -354 19 1 316 299 47 16 chr12 105381473 105381600 -38404855 - L3 LINE CR1 -1200 377 247 277 265 12 12 chr12 105382655 105382738 -38403717 + LTR16C LTR ERVL 408 490 -1 2193 122 3 0 chr12 105383509 105383804 -38402651 + AluSq SINE Alu 6 301 -12 353 320 33 50 chr12 105384086 105384267 -38402188 + HERVL LTR ERVL 1390 1567 -3429 1832 162 64 0 chr12 105384268 105384613 -38401842 - MLT1C LTR MaLR 0 467 101 262 229 71 14 chr12 105384704 105384774 -38401681 + HERVL LTR ERVL 1738 1811 -3185 461 267 33 0 chr12 105385373 105385493 -38400962 + MER5C DNA MER1_type 1 124 -200 299 353 7 0 chr12 105385645 105385798 -38400657 + HERVL LTR ERVL 3793 3946 -1708 838 342 21 11 chr12 105385828 105386208 -38400247 + HERVL LTR ERVL 4013 4396 -1258 1737 159 32 49 chr12 105386373 105386718 -38399737 + MER1B DNA MER1_type 1 339 0 634 240 65 0 chr12 105387029 105387183 -38399272 - MIR SINE MIR -98 164 1 26 30 0 0 chr12 105387314 105387347 -38399108 + AT_rich Low_complexity Low_complexity 1 33 0 478 258 114 3 chr12 105387738 105387870 -38398585 + MIR SINE MIR 6 149 -59 1373 168 28 28 chr12 105388249 105388571 -38397884 + MER33 DNA MER1_type 2 323 -1 2265 150 34 92 chr12 105389020 105389572 -38396883 - MLT2B1 LTR ERVL 0 520 1 2060 102 52 68 chr12 105389656 105390037 -38396418 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr12 105390392 105390439 -38396016 + AT_rich Low_complexity Low_complexity 1 47 0 1099 239 37 0 chr12 105390518 105390761 -38395694 + MIR SINE MIR 11 262 0 220 323 186 0 chr12 105391088 105391212 -38395243 - L2 LINE L2 -8 3264 3118 1828 170 122 6 chr12 105391225 105391578 -38394877 + MSTD LTR MaLR 3 396 0 239 395 0 0 chr12 105391591 105391705 -38394750 - L2 LINE L2 -290 2982 2869 293 350 36 43 chr12 105391799 105391939 -38394516 - L2 LINE L2 -233 3039 2901 231 178 0 22 chr12 105392415 105392460 -38393995 - MER96B DNA MER1_type? 0 417 374 577 206 67 6 chr12 105392484 105392649 -38393806 - MER96B DNA MER1_type? -242 175 1 257 206 59 59 chr12 105392649 105392717 -38393738 + L2 LINE L2 3204 3271 -1 1506 192 105 9 chr12 105393074 105393407 -38393048 + MLT1A1 LTR MaLR 1 365 0 490 240 97 34 chr12 105393442 105393617 -38392838 + L2 LINE L2 3083 3268 -45 362 254 148 0 chr12 105393731 105393853 -38392602 + L1MEd LINE L1 116 255 -5864 555 250 44 33 chr12 105393927 105394107 -38392348 + L1MEd LINE L1 394 575 -5544 414 235 15 15 chr12 105394107 105394243 -38392212 + LTR41 LTR ERVL 1 136 -637 23 33 0 0 chr12 105394299 105394329 -38392126 + AT_rich Low_complexity Low_complexity 1 30 0 1421 200 163 45 chr12 105394831 105395296 -38391159 + MLT2B1 LTR ERVL 1 520 0 288 262 56 95 chr12 105395627 105395879 -38390576 + MLT1K LTR MaLR 333 574 -14 884 198 0 18 chr12 105396198 105396365 -38390090 + FRAM SINE Alu 2 165 -1 32 0 0 0 chr12 105396396 105396428 -38390027 + AT_rich Low_complexity Low_complexity 1 32 0 2636 7 0 0 chr12 105396815 105397139 -38389316 - AluYb8 SINE Alu 0 324 1 10781 28 0 0 chr12 105397821 105399159 -38387296 - L1PA4 LINE L1 -755 5391 4054 6361 33 3 1 chr12 105399159 105399913 -38386542 + L1PA4 LINE L1 5390 6152 -3 10557 142 25 13 chr12 105400203 105403267 -38383188 - L1MA3 LINE L1 -2 6303 3199 1378 217 88 41 chr12 105403933 105404409 -38382046 - MLT1E3 LTR MaLR -32 592 40 1835 140 76 25 chr12 105404409 105404765 -38381690 - THE1C LTR MaLR -1 374 1 1378 217 88 41 chr12 105404765 105404800 -38381655 - MLT1E3 LTR MaLR -584 40 8 859 144 0 0 chr12 105404926 105405051 -38381404 + FLAM_C SINE Alu 1 125 -8 1964 245 58 29 chr12 105406550 105407102 -38379353 + MLT1E LTR MaLR 26 593 0 1936 146 7 0 chr12 105407663 105407951 -38378504 - AluJo SINE Alu -22 290 1 801 151 14 22 chr12 105407953 105408092 -38378363 - FLAM_C SINE Alu -5 138 1 460 311 61 8 chr12 105409555 105409687 -38376768 + L2 LINE L2 3134 3272 0 230 426 62 5 chr12 105409829 105410024 -38376431 - L2 LINE L2 -553 2761 2556 305 276 60 43 chr12 105410085 105410201 -38376254 - L2 LINE L2 -2 3270 3153 293 353 96 34 chr12 105410368 105411097 -38375358 - L2 LINE L2 -834 2480 1707 298 319 88 9 chr12 105411235 105411348 -38375107 - L2 LINE L2 0 3313 3192 449 337 111 26 chr12 105411504 105411854 -38374601 + MLT1K LTR MaLR 204 583 -5 2512 106 22 6 chr12 105411975 105412333 -38374122 - THE1B LTR MaLR 0 364 1 1718 50 27 0 chr12 105412373 105412594 -38373861 - L1PA7 LINE L1 -2 6152 5926 185 262 48 101 chr12 105412820 105412988 -38373467 + L2 LINE L2 2933 3091 -181 207 375 73 22 chr12 105413415 105413551 -38372904 - L2 LINE L2 -221 3051 2909 * 963 285 116 36 chr12 105413550 105413988 -38372467 - L2 LINE L2 -11 3302 2830 185 234 85 0 chr12 105414309 105414356 -38372099 - MIR3 SINE MIR -49 159 109 278 219 0 14 chr12 105414612 105414685 -38371770 + MLT1I LTR MaLR 338 409 0 1489 159 66 27 chr12 105414861 105415195 -38371260 - MLT1A2 LTR MaLR -26 348 4 378 303 12 30 chr12 105415198 105415363 -38371092 + MLT1H LTR MaLR 99 260 -289 1894 212 106 70 chr12 105416151 105416755 -38369700 - MLT1E2 LTR MaLR 0 626 1 248 316 178 13 chr12 105417600 105417752 -38368703 - MIR SINE MIR -65 197 21 879 233 101 0 chr12 105418282 105418471 -38367984 + MER58A DNA MER1_type 2 209 -15 195 42 0 0 chr12 105418518 105418542 -38367913 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1517 158 54 50 chr12 105418542 105418821 -38367634 - AluJo SINE Alu -32 280 1 2149 239 84 59 chr12 105418823 105419931 -38366524 - HAL1 LINE L1 -127 2380 1245 262 276 181 0 chr12 105419959 105420064 -38366391 - MLT1H LTR MaLR -17 532 409 1413 186 11 43 chr12 105420160 105420440 -38366015 + AluJo SINE Alu 7 277 -35 239 119 0 0 chr12 105420530 105420572 -38365883 + L1MA5 LINE L1 6223 6264 -36 586 183 58 119 chr12 105420785 105421130 -38365325 - HAL1 LINE L1 -1264 1243 920 355 275 43 29 chr12 105421347 105421485 -38364970 - HAL1 LINE L1 -2320 187 48 805 145 192 57 chr12 105423230 105423423 -38363032 + MER20 DNA MER1_type 1 219 0 2054 26 4 0 chr12 105423850 105424084 -38362371 + AluY SINE Alu 77 311 0 2145 123 3 13 chr12 105424554 105424856 -38361599 + AluSx SINE Alu 1 299 -13 223 304 14 0 chr12 105424860 105424929 -38361526 + (TAAA)n Simple_repeat Simple_repeat 4 73 0 275 293 83 68 chr12 105425557 105425762 -38360693 + MIR SINE MIR 34 241 -21 229 331 0 34 chr12 105426115 105426289 -38360166 + MIR SINE MIR 18 244 -18 362 323 78 72 chr12 105426409 105426870 -38359585 - L2 LINE L2 0 3272 2809 2050 136 0 26 chr12 105426936 105427246 -38359209 - AluJb SINE Alu -10 302 1 2166 84 0 71 chr12 105427616 105427939 -38358516 - AluY SINE Alu -11 300 1 2137 113 0 3 chr12 105429508 105429840 -38356615 + AluSx SINE Alu 1 331 0 4955 126 38 0 chr12 105430637 105431384 -38355071 - L1PA8A LINE L1 -2 6129 5382 2536 56 0 0 chr12 105431384 105431686 -38354769 - AluY SINE Alu -9 302 1 4955 126 38 0 chr12 105431686 105431947 -38354508 - L1PA8A LINE L1 -749 5382 5132 250 318 0 0 chr12 105432938 105433004 -38353451 + CT-rich Low_complexity Low_complexity 3 68 0 2522 225 134 20 chr12 105433566 105434215 -38352240 + L1MC4 LINE L1 6586 7363 -445 1945 126 40 7 chr12 105434215 105434516 -38351939 + AluSx SINE Alu 1 311 -1 2522 225 134 20 chr12 105434516 105434912 -38351543 + L1MC4 LINE L1 7363 7713 -95 35 24 0 0 chr12 105434953 105434995 -38351460 + AT_rich Low_complexity Low_complexity 1 42 0 31 68 0 0 chr12 105435692 105435751 -38350704 + AT_rich Low_complexity Low_complexity 1 59 0 540 309 69 10 chr12 105435769 105435973 -38350482 - MIR SINE MIR 0 262 47 992 166 0 0 chr12 105435995 105436146 -38350309 - FRAM SINE Alu -15 161 11 2381 81 0 7 chr12 105436202 105436510 -38349945 + AluSc SINE Alu 3 308 -1 2097 89 4 7 chr12 105436850 105437130 -38349325 + AluY SINE Alu 1 279 -32 333 0 0 0 chr12 105437130 105437167 -38349288 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 2875 128 34 0 chr12 105437233 105437640 -38348815 + MSTB LTR MaLR 5 425 -1 1713 162 0 19 chr12 105437790 105438056 -38348399 - AluJo SINE Alu -49 263 3 237 263 79 125 chr12 105438359 105438511 -38347944 + MIR SINE MIR 2 146 -116 437 287 19 45 chr12 105438672 105438829 -38347626 - MER5A DNA MER1_type -1 188 36 287 267 38 0 chr12 105438857 105438962 -38347493 + L1ME4a LINE L1 5794 5902 -219 369 317 49 37 chr12 105439268 105439432 -38347023 + L2 LINE L2 2936 3101 -171 9176 115 71 15 chr12 105440452 105441871 -38344584 + Tigger1 DNA MER2_type 30 1670 -748 1856 147 7 13 chr12 105441871 105442171 -38344284 + AluJb SINE Alu 1 298 -14 9176 115 71 15 chr12 105442171 105442964 -38343491 + Tigger1 DNA MER2_type 1670 2418 0 644 160 0 0 chr12 105443163 105443257 -38343198 + AluJb SINE Alu 1 94 -218 816 148 0 0 chr12 105443313 105443428 -38343027 - AluJb SINE Alu -197 115 1 758 91 0 0 chr12 105443428 105443527 -38342928 - Tigger1 DNA MER2_type -829 1589 1491 901 223 15 24 chr12 105443528 105443734 -38342721 + AluJb SINE Alu 87 290 -22 1865 108 27 6 chr12 105444015 105444344 -38342111 - L1PA16 LINE L1 -633 5533 5200 3796 138 33 0 chr12 105444344 105444922 -38341533 + L1PA16 LINE L1 5559 6158 -8 1637 212 19 76 chr12 105445378 105445717 -38340738 - MSTD LTR MaLR 0 396 84 1651 178 7 20 chr12 105445717 105446020 -38340435 - AluJo SINE Alu -11 301 3 1637 212 19 76 chr12 105446020 105446100 -38340355 - MSTD LTR MaLR -312 84 1 22 35 0 0 chr12 105447568 105447597 -38338858 + AT_rich Low_complexity Low_complexity 1 29 0 645 325 129 33 chr12 105448205 105448808 -38337647 + L3 LINE CR1 314 974 -603 307 265 49 43 chr12 105448922 105449084 -38337371 - L1ME4a LINE L1 -75 6046 5884 757 314 101 44 chr12 105449114 105449618 -38336837 + L3 LINE CR1 1044 1576 -1 343 219 34 84 chr12 105449734 105449853 -38336602 - MIR SINE MIR -44 218 106 482 271 142 0 chr12 105450213 105450368 -38336087 + MIR SINE MIR 53 229 -33 21 0 0 0 chr12 105450904 105450925 -38335530 + AT_rich Low_complexity Low_complexity 1 21 0 369 284 176 52 chr12 105453088 105453553 -38332902 - L1M2 LINE L1 -5763 1086 564 518 256 48 18 chr12 105454279 105454447 -38332008 - MIR SINE MIR -81 181 9 582 246 150 21 chr12 105454498 105454685 -38331770 - MIR SINE MIR -12 250 40 230 348 43 0 chr12 105455583 105455675 -38330780 + MIR3 SINE MIR 111 206 -2 1826 113 4 0 chr12 105455775 105456022 -38330433 - AluSx SINE Alu -24 288 41 31 0 0 0 chr12 105456031 105456062 -38330393 + AT_rich Low_complexity Low_complexity 1 31 0 2283 92 0 3 chr12 105456121 105456444 -38330011 + AluY SINE Alu 1 322 0 1486 200 58 7 chr12 105458189 105458499 -38327956 - MER58B DNA MER1_type 0 341 16 2142 117 0 0 chr12 105458704 105459045 -38327410 + AluSx SINE Alu 1 341 0 718 221 165 6 chr12 105459127 105459449 -38327006 - LTR50 LTR ERVL -242 553 86 4014 152 35 123 chr12 105459786 105460787 -38325668 - MER21A LTR ERV1 -6 925 13 27 0 0 0 chr12 105461025 105461052 -38325403 + AT_rich Low_complexity Low_complexity 1 27 0 16468 58 3 10 chr12 105461122 105463267 -38323188 + L1P LINE L1 2953 5081 -1065 7564 59 1 2 chr12 105463374 105464781 -38321674 + L1PA6 LINE L1 4751 6154 0 192 40 0 0 chr12 105464787 105464812 -38321643 + (CAA)n Simple_repeat Simple_repeat 1 25 0 214 258 169 11 chr12 105464840 105464929 -38321526 - MIR SINE MIR 0 262 160 2240 122 3 0 chr12 105464934 105465238 -38321217 - AluSx SINE Alu -7 305 1 646 204 28 63 chr12 105465923 105466065 -38320390 + FRAM SINE Alu 22 158 -18 616 308 60 48 chr12 105466120 105466435 -38320020 - L2 LINE L2 -1 3271 2953 1237 227 3 48 chr12 105467239 105467534 -38318921 + AluJo SINE Alu 1 282 -30 2176 143 61 26 chr12 105467671 105467871 -38318584 - MLT1B LTR MaLR 0 390 198 2835 16 0 0 chr12 105467871 105468180 -38318275 - AluYa5 SINE Alu -2 309 1 2176 143 61 26 chr12 105468180 105468356 -38318099 - MLT1B LTR MaLR -192 198 1 1831 174 161 115 chr12 105468376 105469071 -38317384 - LTR8A LTR ERV1 0 727 1 1871 68 57 11 chr12 105469237 105469500 -38316955 + AluYa5 SINE Alu 23 297 -14 33 0 0 0 chr12 105469501 105469534 -38316921 + AT_rich Low_complexity Low_complexity 1 33 0 1462 176 77 61 chr12 105469534 105469897 -38316558 + LTR49 LTR ERV1 227 595 0 10540 66 2 5 chr12 105470532 105472599 -38313856 - L1PA6 LINE L1 -94 6060 4000 41583 62 17 3 chr12 105472710 105478394 -38308061 - L1P2 LINE L1 -373 5781 11 194 303 0 15 chr12 105478415 105478481 -38307974 - L2 LINE L2 -2226 1088 1024 1188 236 104 6 chr12 105478527 105478786 -38307669 - MLT1C LTR MaLR 0 467 166 438 75 0 0 chr12 105478786 105478853 -38307602 + (TG)n Simple_repeat Simple_repeat 2 68 0 1188 236 104 6 chr12 105478853 105478928 -38307527 - MLT1C LTR MaLR -301 166 100 188 310 141 50 chr12 105478969 105479266 -38307189 + L2 LINE L2 2367 2690 -624 371 339 124 14 chr12 105480181 105480458 -38305997 + L2 LINE L2 2681 3033 -280 402 299 152 33 chr12 105480535 105480746 -38305709 - HAL1b LINE L1 -637 711 476 328 231 0 0 chr12 105480753 105480818 -38305637 + MLT1L LTR MaLR 11 75 -540 357 153 0 0 chr12 105480865 105480924 -38305531 + MLT1L LTR MaLR 173 231 -384 549 241 147 0 chr12 105481030 105481200 -38305255 + MLT1L LTR MaLR 421 615 0 603 278 83 35 chr12 105481398 105481581 -38304874 + L2 LINE L2 1206 1404 -1910 2298 170 57 0 chr12 105481581 105481986 -38304469 + MSTA LTR MaLR 1 428 0 603 278 83 35 chr12 105481986 105482032 -38304423 + L2 LINE L2 1404 1446 -1868 258 333 116 52 chr12 105482035 105482458 -38303997 + LTR16A LTR ERVL 1 450 0 1882 294 118 10 chr12 105482462 105483030 -38303425 + L2 LINE L2 1450 2124 -1190 1898 121 7 0 chr12 105483030 105483302 -38303153 - AluSx SINE Alu -7 305 32 1882 294 118 10 chr12 105483302 105483502 -38302953 + L2 LINE L2 2124 2301 -1013 2089 123 13 28 chr12 105483600 105483918 -38302537 - AluSq SINE Alu 0 313 1 1541 130 96 66 chr12 105483927 105484228 -38302227 - AluJb SINE Alu -2 310 1 357 323 79 6 chr12 105484486 105484650 -38301805 - L3 LINE CR1 -1282 295 120 2221 129 96 0 chr12 105484672 105485059 -38301396 - MSTC LTR MaLR 0 428 5 2935 219 68 12 chr12 105485511 105486813 -38299642 + L1ME1 LINE L1 4781 6160 -6 195 184 0 0 chr12 105487325 105487363 -38299092 + (CAT)n Simple_repeat Simple_repeat 3 40 0 1933 122 40 33 chr12 105487457 105487761 -38298694 + AluSx SINE Alu 1 306 -6 1240 190 18 9 chr12 105488039 105488265 -38298190 - AluJo SINE Alu -84 228 1 1456 151 14 91 chr12 105488436 105488787 -38297668 + MLT1A2 LTR MaLR 1 324 -50 236 271 0 17 chr12 105488966 105489025 -38297430 + MIR3 SINE MIR 137 194 -14 2072 128 20 0 chr12 105489031 105489328 -38297127 + AluSq SINE Alu 7 309 -4 1717 155 37 0 chr12 105489434 105489705 -38296750 - AluJb SINE Alu -15 297 17 805 179 0 28 chr12 105489797 105489942 -38296513 + FLAM_C SINE Alu 1 141 -2 2434 62 0 13 chr12 105489944 105490251 -38296204 + AluY SINE Alu 1 303 -8 220 300 50 57 chr12 105490475 105490615 -38295840 + MIR SINE MIR 68 206 -56 263 325 50 0 chr12 105491872 105491952 -38294503 + MIR SINE MIR 38 121 -87 483 173 16 5 chr12 105492150 105492395 -38294060 + AluJo SINE Alu 1 280 -32 21 0 0 0 chr12 105492817 105492838 -38293617 + AT_rich Low_complexity Low_complexity 1 21 0 460 330 71 5 chr12 105494263 105494460 -38291995 - MIR SINE MIR 0 262 53 2108 89 0 7 chr12 105494718 105494989 -38291466 - AluSg1 SINE Alu -16 293 25 305 321 0 12 chr12 105495021 105495102 -38291353 + L2 LINE L2 3186 3265 -7 1935 161 0 0 chr12 105495195 105495486 -38290969 + AluJb SINE Alu 1 291 -21 206 262 250 70 chr12 105495524 105495696 -38290759 + MIR SINE MIR 46 248 -14 2032 224 105 17 chr12 105496814 105497355 -38289100 - MLT1E LTR MaLR -3 590 2 1237 120 102 4 chr12 105498026 105498300 -38288155 - AluY SINE Alu 0 301 1 593 249 81 45 chr12 105498729 105499038 -38287417 - HERV16 LTR ERVL -3081 1915 1596 186 43 0 0 chr12 105500477 105500500 -38285955 + (CA)n Simple_repeat Simple_repeat 2 24 0 508 202 0 64 chr12 105500530 105500639 -38285816 - AluJ/FLAM SINE Alu -210 102 1 2002 145 3 0 chr12 105500895 105501184 -38285271 + AluJb SINE Alu 1 290 -22 211 171 0 0 chr12 105501524 105501559 -38284896 - L2 LINE L2 -16 3256 3222 1051 83 15 0 chr12 105503145 105503278 -38283177 + AluSq/x SINE Alu 1 135 -177 2190 123 7 10 chr12 105503278 105503586 -38282869 + AluSx SINE Alu 1 307 -5 1712 161 0 66 chr12 105504131 105504435 -38282020 + AluSx SINE Alu 1 284 -28 2280 86 3 3 chr12 105504436 105504737 -38281718 + AluSx SINE Alu 1 301 -11 2011 169 11 3 chr12 105505376 105505731 -38280724 + L1MC1 LINE L1 5951 6308 -25 29 47 0 0 chr12 105505991 105506034 -38280421 + AT_rich Low_complexity Low_complexity 1 43 0 227 59 0 0 chr12 105506471 105506505 -38279950 - L1MB7 LINE L1 -18 6166 6133 1563 159 4 16 chr12 105506505 105506756 -38279699 - AluSx SINE Alu -22 290 43 528 176 10 0 chr12 105506779 105506881 -38279574 - L1MB7 LINE L1 -43 6141 6039 2286 112 0 0 chr12 105507934 105508229 -38278226 + AluSx SINE Alu 1 295 -17 1794 151 20 10 chr12 105508555 105508847 -38277608 + AluJo SINE Alu 1 295 -17 1755 103 27 30 chr12 105508852 105509114 -38277341 + AluSg SINE Alu 1 261 -49 278 209 0 7 chr12 105509127 105509212 -38277243 + L1ME LINE L1 5747 5824 -297 700 157 43 0 chr12 105509453 105509593 -38276862 - L1MB7 LINE L1 -50 6134 5989 211 136 23 0 chr12 105509602 105509646 -38276809 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 426 275 239 0 chr12 105510100 105510238 -38276217 + MER5A DNA MER1_type 13 183 -6 215 269 0 0 chr12 105510725 105510777 -38275678 + C-rich Low_complexity Low_complexity 3 54 0 25 0 0 0 chr12 105511974 105511999 -38274456 + AT_rich Low_complexity Low_complexity 1 25 0 741 312 162 27 chr12 105512324 105512927 -38273528 + L2 LINE L2 2382 3055 -217 405 311 71 27 chr12 105513059 105513284 -38273171 - MIR SINE MIR -13 249 15 424 345 23 23 chr12 105513294 105513465 -38272990 - MER5B DNA MER1_type -7 171 1 2436 53 0 3 chr12 105513526 105513825 -38272630 - AluY SINE Alu -13 298 1 1015 71 0 50 chr12 105514163 105514304 -38272151 - FLAM_C SINE Alu 0 143 10 214 357 60 0 chr12 105514367 105514451 -38272004 + L2 LINE L2 3212 3300 -13 189 0 0 0 chr12 105514799 105514820 -38271635 + (A)n Simple_repeat Simple_repeat 1 21 0 325 321 142 30 chr12 105515958 105516226 -38270229 + L2 LINE L2 2135 2432 -882 200 211 0 53 chr12 105516269 105516326 -38270129 + T-rich Low_complexity Low_complexity 5 58 0 184 382 0 15 chr12 105516997 105517065 -38269390 + L2 LINE L2 3190 3256 -16 515 162 44 44 chr12 105517757 105517893 -38268562 - Charlie2b DNA MER1_type 0 2782 2647 265 286 12 12 chr12 105518049 105518133 -38268322 - Charlie2b DNA MER1_type -2131 651 568 650 239 32 11 chr12 105518172 105518360 -38268095 - Charlie2b DNA MER1_type -2583 279 88 377 222 0 12 chr12 105518360 105518441 -38268014 - Charlie4 DNA MER1_type -1 1960 1881 2783 243 73 17 chr12 105518442 105518734 -38267721 - L1MEc LINE L1 -1502 4713 4439 1729 194 27 7 chr12 105518734 105519033 -38267422 - AluJo SINE Alu -7 305 1 2783 243 73 17 chr12 105519033 105519776 -38266679 - L1MEc LINE L1 -1776 4439 3620 2638 215 94 43 chr12 105519821 105519856 -38266599 - L1MEc LINE L1 -2852 3363 3331 1653 210 0 22 chr12 105519856 105520175 -38266280 - AluJb SINE Alu 0 312 1 2638 215 94 43 chr12 105520175 105521687 -38264768 - L1MEc LINE L1 -2884 3331 1801 1496 175 0 0 chr12 105521725 105521989 -38264466 - AluJb SINE Alu 0 312 49 442 264 48 38 chr12 105522011 105522165 -38264290 - L1MEc LINE L1 -4728 1668 1517 2365 97 0 0 chr12 105522165 105522465 -38263990 - AluSc SINE Alu -9 300 1 442 264 48 38 chr12 105522465 105522624 -38263831 - L1MEc LINE L1 -4879 1517 1352 2115 142 3 23 chr12 105522637 105522981 -38263474 - MER1B DNA MER1_type 0 337 1 593 326 77 37 chr12 105522984 105523763 -38262692 - L1MEc LINE L1 -5543 853 44 356 291 0 0 chr12 105523980 105524059 -38262396 - Charlie2b DNA MER1_type -2777 85 7 1216 150 53 13 chr12 105524173 105524400 -38262055 + MER46A DNA MER2_type 1 236 0 1870 150 7 0 chr12 105524557 105524850 -38261605 - AluJb SINE Alu -1 311 17 805 179 0 28 chr12 105524942 105525087 -38261368 + FLAM_C SINE Alu 1 141 -2 2442 60 3 3 chr12 105525089 105525391 -38261064 + AluY SINE Alu 1 302 -9 1450 179 0 28 chr12 105525549 105525824 -38260631 - AluSx SINE Alu 0 305 38 2165 120 3 0 chr12 105525856 105526156 -38260299 - AluSx SINE Alu -7 305 5 258 27 27 0 chr12 105527103 105527140 -38259315 - AluSx SINE Alu -264 38 1 1735 106 0 0 chr12 105528071 105528298 -38258157 - AluSx SINE Alu -85 227 1 696 195 16 0 chr12 105528425 105528548 -38257907 + FLAM_C SINE Alu 1 125 -8 27 29 0 0 chr12 105528560 105528594 -38257861 + AT_rich Low_complexity Low_complexity 1 34 0 934 204 161 22 chr12 105528610 105529145 -38257310 - L1ME3A LINE L1 -31 6139 5436 41 36 0 0 chr12 105530308 105530363 -38256092 + AT_rich Low_complexity Low_complexity 1 55 0 23 54 0 0 chr12 105530475 105530512 -38255943 + AT_rich Low_complexity Low_complexity 1 37 0 237 33 0 0 chr12 105530804 105530834 -38255621 + (TTG)n Simple_repeat Simple_repeat 2 31 0 979 168 19 0 chr12 105530838 105530993 -38255462 - FAM SINE Alu -17 158 1 28 61 0 0 chr12 105531325 105531374 -38255081 + AT_rich Low_complexity Low_complexity 1 49 0 702 233 0 0 chr12 105531850 105531983 -38254472 - FLAM_C SINE Alu 0 133 1 2119 132 3 7 chr12 105532089 105532392 -38254063 + AluJo SINE Alu 1 302 -10 441 190 121 35 chr12 105532425 105532541 -38253914 - FLAM_C SINE Alu -7 126 1 408 259 129 0 chr12 105532919 105533058 -38253397 + MIR SINE MIR 88 244 -18 188 300 85 39 chr12 105533588 105533718 -38252737 - MIR SINE MIR -5 257 122 204 163 20 20 chr12 105534089 105534138 -38252317 + (AATAG)n Simple_repeat Simple_repeat 4 52 0 249 232 43 14 chr12 105536152 105536221 -38250234 - MIR SINE MIR -21 241 171 189 304 36 0 chr12 105536254 105536310 -38250145 - MIR SINE MIR -186 76 19 1434 146 82 78 chr12 105536370 105536651 -38249804 - AluJo SINE Alu -30 282 1 566 230 0 22 chr12 105536656 105536791 -38249664 - FLAM_A SINE Alu -1 132 1 6467 72 13 68 chr12 105537066 105539490 -38246965 - SVA Other Other -518 1383 1 293 0 0 26 chr12 105539496 105539534 -38246921 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 215 322 43 0 chr12 105539620 105539735 -38246720 + L2 LINE L2 3150 3269 -3 542 333 65 0 chr12 105540924 105541125 -38245330 - MIR SINE MIR -44 218 5 22 0 0 0 chr12 105542079 105542101 -38244354 + AT_rich Low_complexity Low_complexity 1 22 0 2135 75 6 103 chr12 105542283 105542614 -38243841 - AluSq SINE Alu -14 299 1 1925 149 0 17 chr12 105542690 105542992 -38243463 + AluJo SINE Alu 11 307 -5 3101 226 40 29 chr12 105543079 105544049 -38242406 - L1ME1 LINE L1 -5 6161 5170 6585 113 15 7 chr12 105544089 105545314 -38241141 - L1MA2 LINE L1 0 6304 5069 494 252 0 0 chr12 105545309 105545428 -38241027 - L1ME1 LINE L1 -3459 2687 2569 * 3352 172 33 21 chr12 105545424 105546093 -38240362 - L1M1 LINE L1 -6368 1197 521 * 11240 106 10 31 chr12 105546090 105548332 -38238123 - L1PA7 LINE L1 -4098 2363 125 * 21926 81 11 4 chr12 105548316 105552381 -38234074 + L1PA7 LINE L1 2385 6469 0 1977 193 51 60 chr12 105552394 105552837 -38233618 - L1M1 LINE L1 -7029 536 97 294 95 0 0 chr12 105552837 105552879 -38233576 + (TG)n Simple_repeat Simple_repeat 1 42 0 1977 193 51 60 chr12 105552879 105552964 -38233491 - L1M1 LINE L1 -7468 97 13 * 3469 122 28 141 chr12 105552963 105553717 -38232738 - L1MB3 LINE L1 -40 6143 5509 2022 139 3 0 chr12 105553717 105554026 -38232429 - AluSg SINE Alu 0 310 1 3469 122 28 141 chr12 105554026 105554188 -38232267 - L1MB3 LINE L1 -674 5509 5330 522 293 101 0 chr12 105555296 105555494 -38230961 - MIR SINE MIR -38 224 7 32 26 0 0 chr12 105556514 105556553 -38229902 + AT_rich Low_complexity Low_complexity 1 39 0 1849 126 0 40 chr12 105556566 105556867 -38229588 + AluJo SINE Alu 1 289 -23 2157 122 10 0 chr12 105557611 105557906 -38228549 - AluSx SINE Alu -12 300 3 183 321 36 36 chr12 105558801 105558913 -38227542 - L2 LINE L2 -5 3308 3197 436 271 8 0 chr12 105559058 105559187 -38227268 - MER94 DNA DNA 0 134 5 30 0 0 0 chr12 105559242 105559272 -38227183 + AT_rich Low_complexity Low_complexity 1 30 0 225 274 69 56 chr12 105560035 105560174 -38226281 + MIR SINE MIR 18 162 -46 1886 136 26 20 chr12 105560550 105560852 -38225603 + AluJb SINE Alu 1 304 -8 706 203 8 0 chr12 105560993 105561116 -38225339 - FLAM_A SINE Alu -9 124 1 2279 109 0 3 chr12 105562051 105562362 -38224093 - AluSx SINE Alu -2 310 1 1256 107 0 17 chr12 105563292 105563470 -38222985 - AluSg/x SINE Alu -53 259 85 2256 73 0 11 chr12 105563994 105564328 -38222127 + AluSx SINE Alu 1 331 0 24 0 0 0 chr12 105564629 105564653 -38221802 + AT_rich Low_complexity Low_complexity 1 24 0 722 138 15 164 chr12 105564653 105564848 -38221607 - AluJb SINE Alu -25 287 122 270 178 148 10 chr12 105565345 105565446 -38221009 - L1ME4a LINE L1 -42 6079 5965 1756 144 33 36 chr12 105565497 105565802 -38220653 + AluJo SINE Alu 6 309 -3 2687 19 0 3 chr12 105565822 105566130 -38220325 + AluY SINE Alu 1 307 -4 1946 154 0 44 chr12 105566206 105566352 -38220103 + AluJo SINE Alu 1 152 -160 1917 112 0 4 chr12 105566352 105566610 -38219845 + AluSq SINE Alu 45 301 -12 1946 154 0 44 chr12 105566610 105566781 -38219674 + AluJo SINE Alu 152 304 -8 220 300 50 57 chr12 105567005 105567145 -38219310 + MIR SINE MIR 68 206 -56 263 325 50 0 chr12 105568402 105568482 -38217973 + MIR SINE MIR 38 121 -87 483 173 16 5 chr12 105568680 105568925 -38217530 + AluJo SINE Alu 1 280 -32 21 0 0 0 chr12 105569349 105569370 -38217085 + AT_rich Low_complexity Low_complexity 1 21 0 460 330 71 5 chr12 105570795 105570992 -38215463 - MIR SINE MIR 0 262 53 2108 89 0 7 chr12 105571250 105571521 -38214934 - AluSg1 SINE Alu -16 293 25 305 321 0 12 chr12 105571553 105571634 -38214821 + L2 LINE L2 3186 3265 -7 1935 161 0 0 chr12 105571727 105572018 -38214437 + AluJb SINE Alu 1 291 -21 230 283 225 52 chr12 105572056 105572229 -38214226 + MIR SINE MIR 46 248 -14 2032 224 105 17 chr12 105573347 105573888 -38212567 - MLT1E LTR MaLR -3 590 2 2125 132 10 0 chr12 105574553 105574857 -38211598 - AluSx SINE Alu -5 307 1 1839 134 4 4 chr12 105575070 105575339 -38211116 + AluJb SINE Alu 14 282 -30 2849 183 39 0 chr12 105575678 105576213 -38210242 - MER68 LTR ERV1 -6 556 1 551 266 47 47 chr12 105576213 105576446 -38210009 + L1ME3A LINE L1 5831 6063 -107 1905 138 3 14 chr12 105576459 105576755 -38209700 - AluJb SINE Alu -17 295 3 304 151 63 135 chr12 105576763 105576889 -38209566 + L1ME3A LINE L1 6049 6165 -5 636 260 67 24 chr12 105576999 105577207 -38209248 + MIR SINE MIR 2 218 -44 814 229 5 0 chr12 105580169 105580357 -38206098 - L1MC4 LINE L1 -469 7573 7385 21 0 0 0 chr12 105580891 105580912 -38205543 + AT_rich Low_complexity Low_complexity 1 21 0 266 291 105 12 chr12 105581674 105581760 -38204695 - L2 LINE L2 -32 3281 3188 1469 165 99 13 chr12 105581845 105582148 -38204307 - MER58D DNA MER1_type -51 335 7 462 217 152 0 chr12 105585573 105585711 -38200744 + MER112 DNA MER1_type 1 159 -101 2381 84 0 3 chr12 105585773 105586072 -38200383 + AluSc SINE Alu 1 298 -11 5933 47 16 0 chr12 105586484 105587171 -38199284 + L1PA5 LINE L1 5457 6154 0 882 195 142 19 chr12 105587286 105587343 -38199112 - MER33 DNA MER1_type -2289 296 247 1809 130 3 60 chr12 105587343 105587658 -38198797 - AluSx SINE Alu -15 297 1 882 195 142 19 chr12 105587658 105587688 -38198767 - MER33 DNA MER1_type -2338 247 222 1912 150 24 3 chr12 105587688 105587975 -38198480 + AluJb SINE Alu 2 294 -18 882 195 142 19 chr12 105587975 105588155 -38198300 - MER33 DNA MER1_type -2363 222 1 634 122 24 98 chr12 105588156 105588279 -38198176 + AluSp SINE Alu 3 116 -197 1624 105 31 4 chr12 105588311 105588539 -38197916 + AluSg SINE Alu 56 289 -21 378 208 58 68 chr12 105589048 105589234 -38197221 + LTR41 LTR ERVL 577 793 -2 2006 123 0 85 chr12 105589791 105590132 -38196323 - AluJb SINE Alu 0 312 1 2000 106 16 55 chr12 105590677 105590988 -38195467 - AluSx SINE Alu -13 299 1 335 270 139 0 chr12 105591294 105591409 -38195046 + MIR SINE MIR 122 252 -10 2092 116 7 13 chr12 105591479 105591780 -38194675 + AluSx SINE Alu 1 299 -13 252 333 54 9 chr12 105591845 105591956 -38194499 - L2 LINE L2 -33 3280 3165 220 111 37 0 chr12 105592087 105592141 -38194314 + T-rich Low_complexity Low_complexity 2 57 0 251 304 0 0 chr12 105592199 105592255 -38194200 + L3b LINE CR1 1520 1575 -8 1913 114 15 8 chr12 105593151 105593414 -38193041 + AluSx SINE Alu 21 285 -27 447 204 108 0 chr12 105594206 105594299 -38192156 + MIR SINE MIR 49 151 -111 786 180 0 23 chr12 105594614 105594742 -38191713 - FLAM_A SINE Alu -5 128 4 191 316 248 15 chr12 105594946 105595079 -38191376 + MIR SINE MIR 49 212 -50 246 62 0 0 chr12 105595533 105595565 -38190890 + (T)n Simple_repeat Simple_repeat 1 32 0 1874 130 7 44 chr12 105596056 105596383 -38190072 + AluSx SINE Alu 1 316 0 3200 81 29 11 chr12 105596875 105597317 -38189138 - L1PA13 LINE L1 0 6163 5714 260 316 120 57 chr12 105597451 105597767 -38188688 + L2 LINE L2 2937 3272 0 1040 215 37 16 chr12 105597843 105598089 -38188366 + MIR SINE MIR 12 262 0 1712 211 37 23 chr12 105598512 105598943 -38187512 + L1MB8 LINE L1 5731 6167 -11 291 161 0 0 chr12 105598953 105599009 -38187446 + GA-rich Low_complexity Low_complexity 1 56 0 800 261 39 12 chr12 105599009 105599253 -38187202 + MIR SINE MIR 3 254 -8 207 224 52 0 chr12 105599538 105599596 -38186859 - L2 LINE L2 -9 3304 3244 * 443 239 141 43 chr12 105599585 105599819 -38186636 - L2 LINE L2 -165 3107 2851 481 34 0 0 chr12 105599865 105599924 -38186531 - L1P3 LINE L1 -451 5721 5663 1909 81 0 0 chr12 105599924 105600147 -38186308 + L1PA8 LINE L1 5932 6166 -6 190 296 0 0 chr12 105600191 105600235 -38186220 - L2 LINE L2 -541 2773 2730 184 238 0 95 chr12 105601328 105601391 -38185064 + MIR3 SINE MIR 140 196 -12 23 33 0 0 chr12 105601842 105601872 -38184583 + AT_rich Low_complexity Low_complexity 1 30 0 1712 161 27 3 chr12 105602601 105602899 -38183556 + AluJo SINE Alu 1 305 -7 919 201 0 0 chr12 105604181 105604340 -38182115 - AluJo SINE Alu -17 295 137 687 172 62 0 chr12 105604344 105604472 -38181983 - MIR SINE MIR -121 141 6 652 278 87 34 chr12 105604819 105605295 -38181160 + L2 LINE L2 2632 3126 -187 650 206 101 63 chr12 105605299 105605421 -38181034 - LTR16A1 LTR ERVL 0 457 341 2049 138 6 3 chr12 105605421 105605732 -38180723 + AluSx SINE Alu 1 312 0 650 206 101 63 chr12 105605732 105605896 -38180559 - LTR16A1 LTR ERVL -116 341 160 842 133 0 70 chr12 105606128 105606271 -38180184 - AluJo SINE Alu -169 133 1 4244 324 68 33 chr12 105606588 105607127 -38179328 - HERVL LTR ERVL -437 5217 4698 1746 127 19 0 chr12 105607127 105607386 -38179069 - AluSx SINE Alu -29 283 20 4244 324 68 33 chr12 105607386 105607499 -38178956 - HERVL LTR ERVL -956 4698 4590 1999 135 0 22 chr12 105607499 105607810 -38178645 + AluSx SINE Alu 1 304 -8 4244 324 68 33 chr12 105607810 105609627 -38176828 - HERVL LTR ERVL -1064 4590 2660 186 43 0 0 chr12 105609788 105609811 -38176644 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 282 62 29 chr12 105609811 105610581 -38175874 - HERVL LTR ERVL -2605 2391 1596 1866 141 0 7 chr12 105611278 105611593 -38174862 - AluJo SINE Alu 0 313 1 2114 194 42 18 chr12 105611822 105612271 -38174184 - MLT1C LTR MaLR -2 465 6 320 293 38 23 chr12 105612272 105612405 -38174050 - HERVL LTR ERVL -4009 987 853 292 212 106 0 chr12 105612580 105612645 -38173810 - Charlie8 DNA MER1_type -1907 510 439 296 210 86 12 chr12 105612645 105612726 -38173729 - LTR67 LTR ERVL 0 557 471 2159 118 0 16 chr12 105612731 105613046 -38173409 + AluSx SINE Alu 1 310 -2 252 346 0 12 chr12 105613314 105613395 -38173060 - LTR67 LTR ERVL -364 193 114 220 45 91 0 chr12 105613406 105613450 -38173005 + T-rich Low_complexity Low_complexity 1 48 0 513 280 169 42 chr12 105613537 105613798 -38172657 - Charlie8 DNA MER1_type -2013 404 111 201 39 0 0 chr12 105613833 105613859 -38172596 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 811 142 0 8 chr12 105613874 105613994 -38172461 - FLAM_C SINE Alu -24 119 1 2158 141 3 0 chr12 105614025 105614337 -38172118 - AluSq SINE Alu 0 313 1 673 295 106 13 chr12 105614882 105615109 -38171346 - MIR SINE MIR -12 250 3 1845 107 55 11 chr12 105615269 105615583 -38170872 - AluSx SINE Alu 0 326 1 236 326 67 52 chr12 105615616 105615751 -38170704 + MIR SINE MIR 108 244 -18 1918 142 34 98 chr12 105615855 105616093 -38170362 - MLT1B LTR MaLR 0 390 189 859 168 84 13 chr12 105616093 105616248 -38170207 - FAM SINE Alu -9 166 1 1918 142 34 98 chr12 105616248 105616426 -38170029 - MLT1B LTR MaLR -201 189 1 814 130 0 0 chr12 105616484 105616599 -38169856 - FLAM_C SINE Alu -18 115 1 2292 107 0 13 chr12 105617313 105617623 -38168832 - AluSx SINE Alu -6 306 1 461 221 12 58 chr12 105617818 105617959 -38168496 - MIR SINE MIR -64 144 28 2138 143 0 0 chr12 105618064 105618371 -38168084 + AluSx SINE Alu 1 307 -5 273 139 0 23 chr12 105618819 105618862 -38167593 - LTR16B LTR ERVL 0 464 423 895 174 7 7 chr12 105618875 105619024 -38167431 - FRAM SINE Alu -30 146 1 788 254 124 27 chr12 105619024 105619355 -38167100 - LTR16B LTR ERVL -55 409 47 525 274 134 5 chr12 105619489 105619602 -38166853 - MIR SINE MIR -16 246 149 2398 158 2 33 chr12 105619602 105620000 -38166455 + MLT1B LTR MaLR 3 388 -2 525 274 134 5 chr12 105620000 105620087 -38166368 - MIR SINE MIR -113 149 20 274 319 28 35 chr12 105620244 105620388 -38166067 + MIR SINE MIR 50 192 -70 2249 126 0 0 chr12 105620535 105620844 -38165611 - AluSx SINE Alu -3 309 1 754 264 0 29 chr12 105621047 105621255 -38165200 - MIR SINE MIR -26 236 35 2304 96 10 0 chr12 105621320 105621621 -38164834 - AluSx SINE Alu -8 304 1 2141 266 161 24 chr12 105621622 105622552 -38163903 - L2 LINE L2 -852 2462 1405 486 318 32 13 chr12 105622665 105622819 -38163636 + L2 LINE L2 3116 3272 0 2309 96 0 3 chr12 105622889 105623190 -38163265 + AluSc SINE Alu 2 301 -8 2294 91 3 23 chr12 105623665 105623973 -38162482 + AluSp SINE Alu 1 302 -11 371 241 19 35 chr12 105624056 105624238 -38162217 + MIR SINE MIR 2 235 -27 250 103 0 35 chr12 105624261 105624319 -38162136 + (TAA)n Simple_repeat Simple_repeat 1 56 0 692 198 0 0 chr12 105624731 105624847 -38161608 - AluJb SINE Alu -20 292 177 293 302 38 0 chr12 105625000 105625106 -38161349 - L2 LINE L2 -1 3312 3203 297 51 0 0 chr12 105625302 105625341 -38161114 + (GA)n Simple_repeat Simple_repeat 2 40 0 1955 227 50 6 chr12 105625380 105625865 -38160590 - Charlie4a DNA MER1_type 0 508 3 231 282 47 24 chr12 105626426 105626511 -38159944 + MER103 DNA DNA 78 164 -2 1453 179 45 28 chr12 105627461 105627752 -38158703 - AluJo SINE Alu -16 296 1 260 143 20 0 chr12 105627773 105627822 -38158633 + MIR SINE MIR 188 237 -25 1552 121 35 13 chr12 105628068 105628299 -38158156 + AluSx SINE Alu 1 236 -76 207 0 0 0 chr12 105628315 105628338 -38158117 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr12 105628867 105628887 -38157568 + (TG)n Simple_repeat Simple_repeat 1 20 0 324 111 0 0 chr12 105628887 105628941 -38157514 + (GA)n Simple_repeat Simple_repeat 2 55 0 2172 124 3 7 chr12 105628984 105629290 -38157165 - AluSx SINE Alu -7 305 1 1581 235 94 15 chr12 105629503 105629971 -38156484 - MLT1D LTR MaLR 0 505 1 30 0 0 0 chr12 105630022 105630052 -38156403 + AT_rich Low_complexity Low_complexity 1 30 0 4808 162 21 7 chr12 105630052 105630440 -38156015 - L1MB1 LINE L1 -1 6167 5786 2398 102 0 0 chr12 105630440 105630743 -38155712 - AluSx SINE Alu -9 303 1 4808 162 21 7 chr12 105630743 105631206 -38155249 - L1MB1 LINE L1 -382 5786 5309 396 238 132 23 chr12 105631469 105631651 -38154804 + MIR SINE MIR 16 214 -48 * 1190 288 60 26 chr12 105631649 105632219 -38154236 + L2 LINE L2 2710 3303 -10 262 194 69 97 chr12 105632320 105632392 -38154063 + L2 LINE L2 3151 3220 -52 329 312 46 103 chr12 105632575 105632944 -38153511 - L2 LINE L2 0 3272 2925 238 246 18 0 chr12 105632998 105633055 -38153400 - MIR SINE MIR -8 254 197 285 29 0 0 chr12 105633319 105633594 -38152861 + (TTA)n Simple_repeat Simple_repeat 1 275 0 1457 178 7 72 chr12 105633398 105633560 -38152895 - AluJo SINE Alu -24 288 117 285 29 0 0 chr12 105633560 105633594 -38152861 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2130 128 0 0 chr12 105633594 105633876 -38152579 - AluSx SINE Alu -30 282 1 1457 178 7 72 chr12 105633876 105634016 -38152439 - AluJo SINE Alu -193 119 5 230 267 178 52 chr12 105634031 105634091 -38152364 + L2 LINE L2 3161 3212 -101 2415 93 0 6 chr12 105634091 105634403 -38152052 - AluY SINE Alu -1 310 1 919 148 0 108 chr12 105634405 105634581 -38151874 - FRAM SINE Alu -9 157 1 230 267 178 52 chr12 105634581 105634652 -38151803 + L2 LINE L2 3212 3312 -1 1853 135 0 71 chr12 105635037 105635363 -38151092 - AluSx SINE Alu -9 303 1 520 257 60 44 chr12 105635431 105635614 -38150841 + MIR3 SINE MIR 17 202 -6 695 240 41 12 chr12 105635720 105635891 -38150564 + L3 LINE CR1 1381 1556 -21 779 201 30 91 chr12 105635959 105636223 -38150232 - MER112 DNA MER1_type -11 249 2 1146 70 7 7 chr12 105636855 105636998 -38149457 - AluSq SINE Alu -149 164 22 279 222 0 32 chr12 105637460 105637523 -38148932 - MIR3 SINE MIR -35 173 113 1648 188 44 0 chr12 105637652 105637950 -38148505 - MER58B DNA MER1_type -27 314 4 366 275 18 0 chr12 105637961 105638070 -38148385 + MER113 DNA MER1_type? 1 111 -410 2328 110 0 3 chr12 105638148 105638458 -38147997 - AluSx SINE Alu -3 309 1 407 103 27 65 chr12 105638481 105638666 -38147789 + (TA)n Simple_repeat Simple_repeat 2 179 0 351 295 19 0 chr12 105638800 105638905 -38147550 + MIR3 SINE MIR 99 205 -3 1207 103 0 0 chr12 105639070 105639226 -38147229 + AluSg/x SINE Alu 140 295 -15 1384 118 16 63 chr12 105639226 105639481 -38146974 + Tigger2 DNA MER2_type 2283 2525 -193 1207 162 5 0 chr12 105639545 105639730 -38146725 + Tigger2 DNA MER2_type 2533 2718 0 350 266 180 88 chr12 105641054 105641106 -38145349 + L2 LINE L2 2699 2745 -568 1000 239 153 50 chr12 105641106 105641604 -38144851 - MLT1H LTR MaLR 0 549 1 350 266 180 88 chr12 105641604 105641966 -38144489 + L2 LINE L2 2745 3072 -241 3110 86 20 82 chr12 105641966 105642173 -38144282 - L1PB1 LINE L1 -7 6144 5926 2243 92 0 0 chr12 105642173 105642455 -38144000 - AluSc SINE Alu -27 282 1 3110 86 20 82 chr12 105642455 105642640 -38143815 - L1PB1 LINE L1 -225 5926 5787 288 0 0 0 chr12 105642640 105642672 -38143783 + (TG)n Simple_repeat Simple_repeat 2 33 0 3110 86 20 82 chr12 105642672 105642777 -38143678 - L1PB1 LINE L1 -364 5787 5677 350 266 180 88 chr12 105642777 105642898 -38143557 + L2 LINE L2 3072 3269 -44 255 264 122 37 chr12 105642903 105643020 -38143435 + MER5B DNA MER1_type 2 178 0 1424 184 106 3 chr12 105643349 105643632 -38142823 - AluJb SINE Alu 0 312 1 207 361 12 0 chr12 105644540 105644623 -38141832 - MIR3 SINE MIR -41 167 84 409 292 53 54 chr12 105644700 105644876 -38141579 - MIR SINE MIR -48 214 38 216 314 0 35 chr12 105645010 105645096 -38141359 - L2 LINE L2 -17 3296 3214 1300 267 91 43 chr12 105645131 105645577 -38140878 - L2 LINE L2 -167 3146 2723 2949 16 0 0 chr12 105645577 105645895 -38140560 + AluYb8 SINE Alu 1 318 0 288 0 0 0 chr12 105645897 105645929 -38140526 + (TA)n Simple_repeat Simple_repeat 2 33 0 1300 267 91 43 chr12 105645929 105646012 -38140443 - L2 LINE L2 -590 2723 2645 2062 135 6 28 chr12 105646012 105646331 -38140124 + AluSx SINE Alu 1 312 0 1300 267 91 43 chr12 105646331 105646458 -38139997 - L2 LINE L2 -668 2645 2453 308 250 0 25 chr12 105646655 105646735 -38139720 + MIR SINE MIR 69 146 -62 397 250 71 0 chr12 105646764 105646876 -38139579 + L2 LINE L2 3194 3313 0 399 246 91 0 chr12 105647286 105647396 -38139059 + L2 LINE L2 3194 3313 0 259 268 61 0 chr12 105647442 105647524 -38138931 + MIR SINE MIR 176 262 0 451 126 11 11 chr12 105647536 105647623 -38138832 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 218 307 158 0 chr12 105647630 105647731 -38138724 - L2 LINE L2 0 3272 3156 1011 210 38 13 chr12 105648317 105648555 -38137900 - L2 LINE L2 -650 2664 2421 400 265 27 27 chr12 105648555 105648702 -38137753 - L1ME4a LINE L1 -11 6110 5964 664 226 34 60 chr12 105648908 105648957 -38137498 - L1ME4a LINE L1 -247 5874 5825 2336 108 0 0 chr12 105648957 105649252 -38137203 + AluSx SINE Alu 1 295 -17 664 226 34 60 chr12 105649252 105649437 -38137018 - L1ME4a LINE L1 -296 5825 5646 314 162 29 0 chr12 105649855 105649923 -38136532 + CT-rich Low_complexity Low_complexity 1 70 0 1885 150 13 22 chr12 105649940 105650253 -38136202 - AluJb SINE Alu -2 310 1 1477 187 14 128 chr12 105650513 105650881 -38135574 - L1MC4a LINE L1 -1546 6262 5966 2037 123 7 0 chr12 105650881 105651158 -38135297 - AluSx SINE Alu -13 299 21 1477 187 14 128 chr12 105651158 105651298 -38135157 - L1MC4a LINE L1 -1842 5966 5812 2245 102 16 0 chr12 105651317 105651621 -38134834 - AluSc SINE Alu 0 309 1 1288 213 28 109 chr12 105651622 105652045 -38134410 - L1MC4a LINE L1 -1984 5824 5436 938 296 14 17 chr12 105652041 105652328 -38134127 - L1MEc LINE L1 -6073 323 38 * 408 276 110 59 chr12 105652330 105652703 -38133752 + HAL1 LINE L1 1215 1606 -901 205 80 0 0 chr12 105652723 105652748 -38133707 + (T)n Simple_repeat Simple_repeat 1 25 0 2098 173 22 22 chr12 105652951 105653013 -38133442 - MLT1A1 LTR MaLR 0 365 304 2145 128 7 0 chr12 105653013 105653311 -38133144 - AluSx SINE Alu -12 300 1 2106 122 24 0 chr12 105653311 105653599 -38132856 - AluSx SINE Alu -17 295 1 2098 173 22 22 chr12 105653599 105653900 -38132555 - MLT1A1 LTR MaLR -59 306 1 1815 154 7 7 chr12 105654160 105654458 -38131997 + AluJb SINE Alu 9 306 -6 503 237 100 26 chr12 105654458 105654648 -38131807 - MLT1L LTR MaLR -9 606 403 223 218 192 51 chr12 105654900 105654978 -38131477 - MIR3 SINE MIR -42 166 78 238 169 0 169 chr12 105655309 105655347 -38131108 - ORSL DNA AcHobo -213 62 40 2059 125 7 3 chr12 105655347 105655642 -38130813 + AluJb SINE Alu 1 296 -16 238 169 0 169 chr12 105655642 105655674 -38130781 - ORSL DNA AcHobo -235 40 4 489 283 85 34 chr12 105656349 105656392 -38130063 - MIR3 SINE MIR -11 197 158 2471 115 19 22 chr12 105656392 105656757 -38129698 + THE1B LTR MaLR 1 364 0 489 283 85 34 chr12 105656757 105656890 -38129565 - MIR3 SINE MIR -50 158 12 1962 156 46 38 chr12 105657103 105657475 -38128980 - THE1C LTR MaLR 0 375 1 589 333 31 16 chr12 105657554 105657806 -38128649 + MIR SINE MIR 2 256 -6 283 278 56 11 chr12 105658084 105658174 -38128281 - MIR SINE MIR -50 212 119 2201 110 13 3 chr12 105658685 105658984 -38127471 - AluSx SINE Alu -9 303 2 599 181 0 19 chr12 105659831 105659936 -38126519 + U13 snRNA snRNA 1 103 -1 2147 126 27 0 chr12 105660882 105661183 -38125272 + AluSx SINE Alu 2 310 -2 230 233 165 48 chr12 105661428 105661531 -38124924 - L2 LINE L2 -21 3251 3137 190 386 11 0 chr12 105661949 105662037 -38124418 - L3 LINE CR1 -23 1554 1466 279 0 0 0 chr12 105662189 105662220 -38124235 + (CA)n Simple_repeat Simple_repeat 1 31 0 627 258 50 0 chr12 105662386 105662545 -38123910 - MIR SINE MIR -6 256 90 1965 195 126 24 chr12 105663021 105663545 -38122910 + MLT1D LTR MaLR 28 626 0 765 182 23 8 chr12 105663552 105663684 -38122771 + AluJo SINE Alu 2 135 -177 783 291 136 17 chr12 105663988 105664226 -38122229 - L2 LINE L2 -340 2974 2766 2369 88 3 3 chr12 105664226 105664523 -38121932 - AluSx SINE Alu -15 297 1 783 291 136 17 chr12 105664523 105664697 -38121758 - L2 LINE L2 -548 2766 2513 377 316 58 7 chr12 105664666 105664821 -38121634 + MIR SINE MIR 93 255 -7 * 2389 60 0 3 chr12 105665274 105665593 -38120862 - AluY SINE Alu 0 318 1 22 35 0 0 chr12 105665628 105665657 -38120798 + AT_rich Low_complexity Low_complexity 1 29 0 184 206 69 157 chr12 105666816 105666833 -38119622 - L2 LINE L2 0 3272 3255 423 0 0 0 chr12 105666833 105666880 -38119575 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2007 135 0 0 chr12 105666883 105667165 -38119290 - AluSx SINE Alu -30 282 1 184 206 69 157 chr12 105667165 105667245 -38119210 - L2 LINE L2 -19 3253 3180 335 349 59 58 chr12 105667336 105667757 -38118698 - L2 LINE L2 -218 3054 2615 1985 125 10 16 chr12 105667757 105667893 -38118562 + AluSx SINE Alu 1 136 -176 2300 104 0 0 chr12 105667893 105668190 -38118265 + AluY SINE Alu 1 297 -14 1985 125 10 16 chr12 105668190 105668356 -38118099 + AluSx SINE Alu 136 301 -11 335 349 59 58 chr12 105668356 105668529 -38117926 - L2 LINE L2 -657 2615 2444 451 312 116 9 chr12 105668543 105668758 -38117697 - MIR SINE MIR -8 254 17 1938 120 3 65 chr12 105668859 105669190 -38117265 + AluSx SINE Alu 1 312 0 2048 79 24 48 chr12 105669992 105670284 -38116171 + L1PA8 LINE L1 5888 6172 0 254 290 0 0 chr12 105671009 105671071 -38115384 - MIR3 SINE MIR -49 159 98 367 298 0 16 chr12 105671123 105671244 -38115211 - MIR SINE MIR -21 241 123 1952 164 0 3 chr12 105671373 105671685 -38114770 + AluJb SINE Alu 1 311 -1 251 234 122 56 chr12 105671791 105671898 -38114557 - MIR SINE MIR -138 124 11 424 283 25 31 chr12 105672093 105672252 -38114203 + MIR SINE MIR 47 204 -58 399 284 42 0 chr12 105672259 105672354 -38114101 - L2 LINE L2 -28 3285 3187 464 192 50 0 chr12 105672523 105672622 -38113833 - MER5A DNA MER1_type -77 112 9 1647 130 119 8 chr12 105672868 105673129 -38113326 + AluSg1 SINE Alu 7 296 -13 1686 173 11 0 chr12 105673130 105673408 -38113047 - AluJb SINE Alu -31 281 1 295 198 156 10 chr12 105673425 105673521 -38112934 - MIR SINE MIR -59 203 94 397 226 12 0 chr12 105674332 105674416 -38112039 - L2 LINE L2 -4 3268 3184 268 362 85 7 chr12 105674473 105674614 -38111841 - MIR SINE MIR -56 206 55 1826 118 0 0 chr12 105674656 105674893 -38111562 - AluSx SINE Alu -75 237 1 292 267 20 50 chr12 105675000 105675101 -38111354 - MIR SINE MIR -48 214 117 2373 54 4 0 chr12 105676961 105677237 -38109218 + AluY SINE Alu 22 298 -13 3274 154 10 38 chr12 105677489 105678201 -38108254 - pTR5 LTR ERV1 -1005 1433 742 372 168 42 0 chr12 105678309 105678404 -38108051 + GA-rich Low_complexity Low_complexity 2 100 0 1925 220 55 19 chr12 105678829 105679306 -38107149 + L1ME3 LINE L1 5499 5992 -172 286 135 135 56 chr12 105679307 105679396 -38107059 + L1ME3 LINE L1 6067 6162 0 * 620 218 101 21 chr12 105679391 105679519 -38106936 + L1ME4a LINE L1 5815 5964 -157 1494 73 123 0 chr12 105679519 105679723 -38106732 - MER30 DNA MER1_type 0 230 2 620 218 101 21 chr12 105679723 105679782 -38106673 + L1ME4a LINE L1 5964 6017 -104 525 154 64 0 chr12 105679782 105679860 -38106595 + AluJ/FLAM SINE Alu 2 84 -228 1567 172 15 7 chr12 105680030 105680303 -38106152 - AluJo SINE Alu -33 279 5 221 308 115 0 chr12 105680349 105680427 -38106028 + L2 LINE L2 2554 2640 -674 662 216 112 39 chr12 105680455 105680687 -38105768 - HAL1 LINE L1 -1451 1056 808 1755 224 53 39 chr12 105680700 105681289 -38105166 + L2 LINE L2 1833 2429 -885 985 255 99 43 chr12 105681323 105681715 -38104740 + L2 LINE L2 2891 3304 -9 1216 139 0 0 chr12 105681716 105681882 -38104573 + AluJb SINE Alu 134 299 -13 219 69 0 0 chr12 105681886 105681915 -38104540 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 523 325 22 48 chr12 105681923 105682191 -38104264 - HAL1 LINE L1 -1724 783 523 344 318 27 9 chr12 105682201 105682311 -38104144 - L2 LINE L2 0 3313 3202 531 205 128 149 chr12 105682316 105682746 -38103709 - HAL1 LINE L1 -1996 511 91 338 318 0 30 chr12 105683446 105683578 -38102877 + MIR SINE MIR 108 235 -27 454 258 33 108 chr12 105683936 105684269 -38102186 + MLT1I LTR MaLR 73 380 -29 207 0 0 0 chr12 105684392 105684415 -38102040 + (A)n Simple_repeat Simple_repeat 1 23 0 236 232 43 0 chr12 105684776 105684845 -38101610 + L1MEd LINE L1 561 632 -5487 315 0 0 0 chr12 105684845 105684880 -38101575 + (A)n Simple_repeat Simple_repeat 1 35 0 465 280 65 48 chr12 105685051 105685503 -38100952 + L1MEd LINE L1 763 1232 -4887 289 298 75 0 chr12 105685554 105685648 -38100807 - L2 LINE L2 -845 2469 2369 22 0 0 0 chr12 105686265 105686287 -38100168 + AT_rich Low_complexity Low_complexity 1 22 0 223 316 0 13 chr12 105686396 105686475 -38099980 - MIR SINE MIR -1 261 184 198 0 0 0 chr12 105686636 105686658 -38099797 + (A)n Simple_repeat Simple_repeat 1 22 0 260 281 177 26 chr12 105687386 105687578 -38098877 - L3 LINE CR1 -30 1547 1327 326 283 130 0 chr12 105687588 105687726 -38098729 + MIR SINE MIR 57 212 -50 312 342 74 0 chr12 105687755 105687904 -38098551 - L3 LINE CR1 -289 1288 1129 2275 101 0 3 chr12 105688900 105689196 -38097259 + AluSq SINE Alu 1 295 -18 2157 236 77 83 chr12 105689542 105690239 -38096216 - HAL1 LINE L1 -156 2351 1664 2010 163 0 0 chr12 105690239 105690533 -38095922 - AluSx SINE Alu -18 294 1 2157 236 77 83 chr12 105690533 105691192 -38095263 - HAL1 LINE L1 -843 1664 1003 453 174 0 0 chr12 105691228 105691297 -38095158 + FRAM SINE Alu 71 139 -37 405 0 0 0 chr12 105691297 105691342 -38095113 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 289 311 123 0 chr12 105691349 105691471 -38094984 - Charlie8 DNA MER1_type -2280 137 1 798 50 0 10 chr12 105691527 105691628 -38094827 + HY3 scRNA scRNA 1 100 -1 2067 119 41 0 chr12 105691643 105691938 -38094517 + AluSp SINE Alu 1 307 -6 2150 127 13 0 chr12 105691940 105692248 -38094207 + AluSx SINE Alu 1 312 0 2501 71 0 0 chr12 105692377 105692686 -38093769 + AluY SINE Alu 1 309 -2 182 323 15 15 chr12 105693587 105693652 -38092803 - L2 LINE L2 -94 3178 3114 308 308 0 0 chr12 105694136 105694240 -38092215 + HAL1 LINE L1 1441 1544 -963 1401 211 3 32 chr12 105694312 105694596 -38091859 + AluJo SINE Alu 21 296 -16 276 200 0 0 chr12 105694598 105694658 -38091797 + GA-rich Low_complexity Low_complexity 3 62 0 1909 174 0 13 chr12 105694691 105695007 -38091448 + AluJb SINE Alu 1 312 0 2193 94 7 3 chr12 105696100 105696399 -38090056 + AluSx SINE Alu 1 300 -12 183 261 0 22 chr12 105697207 105697253 -38089202 - L2 LINE L2 -2 3311 3267 1572 164 58 0 chr12 105697318 105697449 -38089006 + AluJo SINE Alu 1 123 -189 2366 84 0 3 chr12 105697449 105697745 -38088710 + AluSx SINE Alu 1 295 -17 1572 164 58 0 chr12 105697745 105697888 -38088567 + AluJo SINE Alu 123 291 -21 638 192 24 40 chr12 105698084 105698209 -38088246 + FLAM_A SINE Alu 1 123 -10 214 230 14 40 chr12 105698603 105698677 -38087778 + CT-rich Low_complexity Low_complexity 3 74 0 2031 125 3 14 chr12 105698798 105699095 -38087360 + AluSx SINE Alu 1 294 -18 381 262 109 86 chr12 105699303 105699570 -38086885 + L2 LINE L2 3041 3313 0 891 150 0 0 chr12 105699817 105699950 -38086505 - FLAM_C SINE Alu 0 133 1 385 197 42 0 chr12 105701004 105701075 -38085380 + MIR SINE MIR 92 165 -97 500 211 31 62 chr12 105701193 105701354 -38085101 - MIR SINE MIR -11 251 96 2329 105 10 0 chr12 105701811 105702115 -38084340 + AluSx SINE Alu 1 307 -5 2411 87 3 3 chr12 105702351 105702661 -38083794 - AluSx SINE Alu -2 310 1 214 345 50 25 chr12 105702732 105702851 -38083604 - L2 LINE L2 0 3313 3192 270 191 0 0 chr12 105702859 105702906 -38083549 + L2 LINE L2 3263 3309 -4 986 179 15 25 chr12 105703175 105703371 -38083084 + AluJb SINE Alu 118 311 -1 271 339 222 24 chr12 105703393 105703751 -38082704 - L2 LINE L2 -457 2857 2571 2016 130 7 0 chr12 105703751 105704044 -38082411 + AluSx SINE Alu 1 295 -17 271 339 222 24 chr12 105704044 105704146 -38082309 - L2 LINE L2 -743 2571 2491 2179 109 0 0 chr12 105704146 105704457 -38081998 + AluSg SINE Alu 1 311 0 271 339 222 24 chr12 105704457 105704554 -38081901 - L2 LINE L2 -823 2491 2415 1373 164 68 25 chr12 105704554 105704834 -38081621 + AluJo SINE Alu 1 292 -20 2223 84 0 3 chr12 105704836 105705122 -38081333 + AluY SINE Alu 1 285 -26 271 339 222 24 chr12 105705122 105705139 -38081316 - L2 LINE L2 -899 2415 2403 533 72 12 0 chr12 105705139 105705222 -38081233 + (TA)n Simple_repeat Simple_repeat 1 84 0 222 37 0 0 chr12 105705225 105705252 -38081203 + (GA)n Simple_repeat Simple_repeat 2 28 0 271 339 222 24 chr12 105705252 105706069 -38080386 - L2 LINE L2 -912 2402 1177 1617 147 108 3 chr12 105706074 105706381 -38080074 + MER44D DNA MER2_type 1 609 0 340 235 191 57 chr12 105706633 105706863 -38079592 + MIR SINE MIR 2 262 0 213 94 0 0 chr12 105707435 105707467 -38078988 + (T)n Simple_repeat Simple_repeat 1 32 0 820 164 0 8 chr12 105707767 105707901 -38078554 - FLAM_C SINE Alu 0 133 1 31 26 0 0 chr12 105707901 105707939 -38078516 + AT_rich Low_complexity Low_complexity 1 38 0 2096 106 7 3 chr12 105708237 105708546 -38077909 - AluSx SINE Alu 0 310 1 218 204 0 56 chr12 105708646 105708754 -38077701 + CT-rich Low_complexity Low_complexity 2 103 0 1692 158 13 45 chr12 105708850 105709161 -38077294 + AluJo SINE Alu 1 301 -11 489 203 0 0 chr12 105709338 105709417 -38077038 + AluJb SINE Alu 136 214 -98 932 121 0 0 chr12 105709433 105709557 -38076898 - FLAM_C SINE Alu -19 124 1 288 114 0 0 chr12 105709562 105709606 -38076849 + FLAM_A SINE Alu 71 114 -19 1575 181 7 36 chr12 105709632 105709936 -38076519 + AluJo SINE Alu 1 295 -17 2101 133 7 0 chr12 105709941 105710242 -38076213 + AluSx SINE Alu 1 303 -9 1574 179 4 4 chr12 105710529 105710792 -38075663 + AluJb SINE Alu 1 263 -49 1701 103 68 18 chr12 105710856 105711137 -38075318 + AluSx SINE Alu 1 295 -17 29 28 0 0 chr12 105711574 105711610 -38074845 + AT_rich Low_complexity Low_complexity 1 36 0 203 250 0 0 chr12 105711610 105711654 -38074801 + L3 LINE CR1 1520 1563 -14 6086 128 9 13 chr12 105711738 105711811 -38074644 + L1PB1 LINE L1 4574 4646 -1505 2411 97 0 10 chr12 105711811 105712122 -38074333 + AluSx SINE Alu 1 308 -4 6086 128 9 13 chr12 105712122 105713445 -38073010 + L1PB1 LINE L1 4646 5962 -189 2080 146 3 0 chr12 105713445 105713746 -38072709 + AluSx SINE Alu 1 302 -10 6086 128 9 13 chr12 105713746 105713935 -38072520 + L1PB1 LINE L1 5962 6150 -1 185 106 0 85 chr12 105713940 105713987 -38072468 + (A)n Simple_repeat Simple_repeat 1 43 0 300 186 0 0 chr12 105714210 105714269 -38072186 + (TA)n Simple_repeat Simple_repeat 2 60 0 2850 133 21 17 chr12 105714683 105715166 -38071289 + MER31A LTR ERV1 1 485 0 1294 171 28 0 chr12 105715194 105715405 -38071050 - AluJb SINE Alu -9 303 87 392 310 123 23 chr12 105716166 105716337 -38070118 + MIR SINE MIR 14 201 -61 2336 68 3 3 chr12 105716394 105716720 -38069735 - AluSp SINE Alu 0 313 1 272 302 116 16 chr12 105716726 105716855 -38069600 + MER5A DNA MER1_type 1 142 -47 2247 97 0 13 chr12 105716911 105717211 -38069244 - AluSx SINE Alu -15 297 2 1247 172 0 0 chr12 105717361 105717564 -38068891 - AluSg/x SINE Alu -14 298 96 1415 172 107 4 chr12 105717749 105717999 -38068456 + AluJb SINE Alu 1 280 -32 378 0 0 0 chr12 105717999 105718041 -38068414 + (CA)n Simple_repeat Simple_repeat 2 43 0 1882 125 10 24 chr12 105718054 105718351 -38068104 + AluSx SINE Alu 2 294 -18 2335 89 0 0 chr12 105718438 105718730 -38067725 + AluSp SINE Alu 1 292 -21 26 0 0 0 chr12 105718733 105718759 -38067696 + AT_rich Low_complexity Low_complexity 1 26 0 925 172 6 6 chr12 105718911 105719074 -38067381 - FRAM SINE Alu -13 163 1 469 124 11 45 chr12 105719387 105719476 -38066979 - AluSg/x SINE Alu -5 304 219 1338 107 0 0 chr12 105719480 105719649 -38066806 - AluY SINE Alu -142 169 1 893 134 0 15 chr12 105719659 105719793 -38066662 - FRAM SINE Alu -20 156 25 1750 169 0 28 chr12 105720041 105720361 -38066094 + AluJo SINE Alu 1 311 -1 354 266 30 89 chr12 105720371 105720574 -38065881 + MERVL LTR ERVL 3899 4089 -1396 202 205 0 0 chr12 105720635 105720674 -38065781 + CT-rich Low_complexity Low_complexity 2 40 0 1904 136 26 16 chr12 105720676 105720985 -38065470 - AluJb SINE Alu 0 312 1 2027 118 11 0 chr12 105721070 105721350 -38065105 - AluSx SINE Alu -10 302 20 386 315 142 14 chr12 105721365 105721584 -38064871 - HAL1 LINE L1 -1435 1072 826 2374 89 0 9 chr12 105721626 105721942 -38064513 - AluSq SINE Alu 0 313 1 953 213 18 0 chr12 105722294 105722458 -38063997 - FAM SINE Alu -8 167 1 2118 122 0 0 chr12 105723167 105723455 -38063000 + AluSg SINE Alu 1 288 -22 2293 94 0 19 chr12 105724489 105724796 -38061659 + AluSx SINE Alu 1 301 -11 225 45 0 68 chr12 105725604 105725648 -38060807 - MADE1 DNA Mariner 0 80 40 358 258 132 42 chr12 105725904 105725958 -38060497 - MIR SINE MIR -61 201 153 2284 109 0 10 chr12 105725958 105726262 -38060193 - AluSx SINE Alu -11 301 1 358 258 132 42 chr12 105726262 105726374 -38060081 - MIR SINE MIR -109 153 20 685 206 0 0 chr12 105726616 105726723 -38059732 + FRAM SINE Alu 1 105 -71 1869 167 7 3 chr12 105726760 105727060 -38059395 + AluJo SINE Alu 1 301 -11 2298 108 0 10 chr12 105727065 105727372 -38059083 + AluSg SINE Alu 1 304 -6 352 207 61 0 chr12 105727404 105727486 -38058969 + FLAM_A SINE Alu 44 130 -3 880 222 6 6 chr12 105727493 105727673 -38058782 - FRAM SINE Alu 0 176 1 236 200 0 0 chr12 105727709 105727759 -38058696 + (TA)n Simple_repeat Simple_repeat 1 50 0 28 0 0 0 chr12 105727775 105727803 -38058652 + AT_rich Low_complexity Low_complexity 1 28 0 192 296 14 42 chr12 105728035 105728106 -38058349 + MIR SINE MIR 30 98 -110 358 354 90 0 chr12 105728134 105728278 -38058177 + MIR3 SINE MIR 38 194 -14 1888 150 25 32 chr12 105728291 105728605 -38057850 - AluJb SINE Alu 0 312 1 204 40 0 0 chr12 105730132 105730157 -38056298 + (T)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr12 105730986 105731014 -38055441 + AT_rich Low_complexity Low_complexity 1 28 0 840 120 8 8 chr12 105731178 105731311 -38055144 + FLAM_C SINE Alu 1 133 0 222 314 35 58 chr12 105732027 105732113 -38054342 + L2 LINE L2 3183 3266 -6 272 312 72 16 chr12 105732143 105732268 -38054187 - MIR SINE MIR -49 213 82 212 316 188 8 chr12 105732683 105732800 -38053655 - MIR3 SINE MIR -16 192 55 1653 158 10 36 chr12 105732854 105733158 -38053297 + AluJb SINE Alu 1 296 -16 25 90 0 0 chr12 105733481 105733548 -38052907 + AT_rich Low_complexity Low_complexity 1 67 0 205 323 0 0 chr12 105734141 105734206 -38052249 + MER5B DNA MER1_type 108 172 -6 1513 170 45 55 chr12 105734552 105734864 -38051591 - AluJo SINE Alu -3 309 1 329 320 75 15 chr12 105735242 105735442 -38051013 - L1ME3 LINE L1 -298 5864 5653 1748 172 7 13 chr12 105735932 105736240 -38050215 + AluJb SINE Alu 6 311 -1 2332 104 0 10 chr12 105736286 105736594 -38049861 - AluSg SINE Alu -5 305 1 453 183 150 50 chr12 105736647 105736767 -38049688 - FLAM_C SINE Alu -1 132 1 248 241 101 13 chr12 105737228 105737307 -38049148 - MIR SINE MIR -75 187 102 191 150 25 25 chr12 105737428 105737468 -38048987 + L2 LINE L2 3219 3258 -14 332 160 23 9 chr12 105737540 105737606 -38048849 - Alu SINE Alu -255 46 1 799 161 60 30 chr12 105737692 105737747 -38048708 - L1MA5A LINE L1 -6 6291 6239 1797 151 21 3 chr12 105737747 105738038 -38048417 + AluJo SINE Alu 2 297 -15 799 161 60 30 chr12 105738038 105738150 -38048305 - L1MA5A LINE L1 -58 6239 6119 558 200 17 8 chr12 105738169 105738289 -38048166 + FLAM_A SINE Alu 4 124 -9 330 305 39 0 chr12 105738335 105738463 -38047992 + L1MD2 LINE L1 5926 6058 -301 2158 113 3 13 chr12 105738581 105738881 -38047574 - AluSx SINE Alu -15 297 1 599 239 161 17 chr12 105739524 105739704 -38046751 - MIR SINE MIR -14 248 43 767 165 8 0 chr12 105739712 105739833 -38046622 - MER20 DNA MER1_type -12 207 86 1234 175 67 14 chr12 105739842 105740065 -38046390 - AluJb SINE Alu -75 237 3 1827 176 0 0 chr12 105740271 105740573 -38045882 + AluJb SINE Alu 1 302 -10 212 271 0 17 chr12 105740684 105740743 -38045712 + MIR3 SINE MIR 137 194 -14 2074 128 20 0 chr12 105740749 105741046 -38045409 + AluSq SINE Alu 7 309 -4 1829 149 39 4 chr12 105741152 105741433 -38045022 - AluJb SINE Alu -15 297 7 781 225 35 20 chr12 105741710 105741910 -38044545 - MIR SINE MIR -54 208 6 1345 186 68 54 chr12 105741948 105742243 -38044212 + AluJo SINE Alu 1 299 -13 2120 108 3 35 chr12 105742339 105742653 -38043802 + AluSx SINE Alu 1 304 -8 506 150 0 0 chr12 105742713 105742793 -38043662 + AluJb SINE Alu 54 133 -179 201 39 0 0 chr12 105742822 105742848 -38043607 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1968 120 4 0 chr12 105742862 105743121 -38043334 - AluSx SINE Alu -52 260 1 33 90 0 0 chr12 105743643 105743732 -38042723 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr12 105743796 105743818 -38042637 + AT_rich Low_complexity Low_complexity 1 22 0 529 60 0 0 chr12 105743818 105743885 -38042570 - L1PA8 LINE L1 -6 6166 6100 1402 182 28 42 chr12 105744526 105744653 -38041802 + AluJo SINE Alu 1 128 -184 1978 149 0 28 chr12 105744653 105744974 -38041481 + AluSx SINE Alu 1 312 0 1402 182 28 42 chr12 105744974 105745132 -38041323 + AluJo SINE Alu 128 282 -30 2631 50 3 0 chr12 105745369 105745672 -38040783 + AluY SINE Alu 1 304 -7 2286 91 0 7 chr12 105745714 105746012 -38040443 + AluSg SINE Alu 1 296 -14 1562 171 34 87 chr12 105746061 105746417 -38040038 + MER1B DNA MER1_type 1 337 0 1971 78 4 4 chr12 105746443 105746699 -38039756 - AluY SINE Alu -13 298 43 506 263 120 29 chr12 105746811 105747087 -38039368 - L1ME4a LINE L1 -202 5919 5670 2222 100 0 3 chr12 105747087 105747386 -38039069 + AluSg SINE Alu 1 298 -12 1555 152 39 4 chr12 105747396 105747652 -38038803 + AluSx SINE Alu 1 265 -47 506 263 120 29 chr12 105747652 105747714 -38038741 - L1ME4a LINE L1 -459 5662 5538 202 175 50 0 chr12 105747748 105747788 -38038667 + GA-rich Low_complexity Low_complexity 3 44 0 294 29 0 0 chr12 105748773 105748808 -38037647 + (TG)n Simple_repeat Simple_repeat 2 36 0 2164 90 0 0 chr12 105748959 105749237 -38037218 + AluSx SINE Alu 1 278 -34 329 246 115 0 chr12 105750178 105750308 -38036147 + MIR SINE MIR 87 231 -31 1205 161 62 66 chr12 105750311 105750512 -38035943 - AluJo SINE Alu -3 309 108 441 0 0 0 chr12 105750512 105750561 -38035894 + (TG)n Simple_repeat Simple_repeat 2 50 0 1205 161 62 66 chr12 105750561 105750663 -38035792 - AluJo SINE Alu -204 108 7 208 94 0 0 chr12 105750755 105750787 -38035668 - MIR SINE MIR -168 94 63 207 296 101 53 chr12 105751639 105751808 -38034647 + MIR SINE MIR 9 185 -77 437 275 23 23 chr12 105751912 105752083 -38034372 + L1ME3A LINE L1 5777 5947 -223 2162 122 3 3 chr12 105752314 105752618 -38033837 - AluSq SINE Alu -9 304 1 2421 98 0 0 chr12 105752842 105753148 -38033307 - AluSp SINE Alu -7 306 1 210 273 80 23 chr12 105753611 105753699 -38032756 - MIR SINE MIR -38 170 77 200 276 0 17 chr12 105754649 105754707 -38031748 + L2 LINE L2 3237 3293 -20 1737 209 17 9 chr12 105754717 105755062 -38031393 + MLT1A1 LTR MaLR 15 362 -3 845 220 145 14 chr12 105755384 105755596 -38030859 - MER58 DNA MER1_type -8 2412 2229 1665 186 16 10 chr12 105755596 105755902 -38030553 + AluJb SINE Alu 1 308 -4 845 220 145 14 chr12 105755902 105755981 -38030474 - MER58 DNA MER1_type -191 2229 6 368 281 52 122 chr12 105756023 105756351 -38030104 - L2 LINE L2 -47 3225 2921 1206 197 9 9 chr12 105756547 105756765 -38029690 - MLT1A1 LTR MaLR 0 365 148 282 206 0 0 chr12 105756769 105756832 -38029623 + (TA)n Simple_repeat Simple_repeat 2 64 0 883 172 19 6 chr12 105756879 105757036 -38029419 - MLT1A1 LTR MaLR -206 159 1 188 320 64 0 chr12 105758033 105758111 -38028344 + L2 LINE L2 3177 3259 -54 396 0 0 0 chr12 105758167 105758211 -38028244 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 244 0 0 chr12 105758263 105758308 -38028147 + L2 LINE L2 3210 3254 -18 339 287 59 30 chr12 105759611 105759813 -38026642 + L2 LINE L2 3081 3288 -25 252 231 0 0 chr12 105760033 105760085 -38026370 + LTR30 LTR ERV1 1 52 -670 1805 89 37 5 chr12 105760085 105760356 -38026099 + LTR12 LTR ERV1 57 2032 -406 329 231 11 0 chr12 105760356 105760447 -38026008 + LTR30 LTR ERV1 552 643 -79 739 121 0 0 chr12 105760449 105760548 -38025907 + LTR12 LTR ERV1 615 713 -1 1070 227 20 13 chr12 105761713 105761982 -38024473 - MLT1D LTR MaLR 0 505 206 812 161 31 0 chr12 105762003 105762150 -38024305 - MSTC LTR MaLR -245 151 1 286 328 63 11 chr12 105762674 105762786 -38023669 - L1MC/D LINE L1 -2011 5797 5671 222 37 0 0 chr12 105762786 105762813 -38023642 + (TA)n Simple_repeat Simple_repeat 2 28 0 286 328 63 11 chr12 105762813 105762874 -38023581 - L1MC/D LINE L1 -2137 5671 5615 30 0 0 0 chr12 105764261 105764291 -38022164 + AT_rich Low_complexity Low_complexity 1 30 0 2339 92 7 0 chr12 105764665 105764968 -38021487 + AluSq SINE Alu 5 309 -4 1450 218 24 27 chr12 105765132 105765410 -38021045 - L1ME1 LINE L1 -5 6161 5883 2534 64 0 13 chr12 105765410 105765724 -38020731 - AluY SINE Alu -1 310 1 1450 218 24 27 chr12 105765724 105765817 -38020638 - L1ME1 LINE L1 -283 5883 5791 21 0 0 0 chr12 105766028 105766049 -38020406 + AT_rich Low_complexity Low_complexity 1 21 0 4158 238 84 16 chr12 105766049 105767352 -38019103 - L1MEc LINE L1 -4970 1426 36 2230 127 0 0 chr12 105767505 105767812 -38018643 - AluSx SINE Alu -5 307 1 465 261 25 8 chr12 105768068 105768187 -38018268 + L2 LINE L2 3191 3311 -2 952 271 73 26 chr12 105768187 105768570 -38017885 - L1ME1 LINE L1 -339 5823 5423 1821 86 171 0 chr12 105769067 105769324 -38017131 + AluSg1 SINE Alu 1 301 -8 189 0 0 0 chr12 105769572 105769593 -38016862 + (TAGGG)n Simple_repeat Simple_repeat 1 21 0 1075 320 52 11 chr12 105769739 105770183 -38016272 + L2 LINE L2 2851 3312 -1 240 310 0 0 chr12 105770198 105770269 -38016186 + (TGAA)n Simple_repeat Simple_repeat 2 72 0 2245 110 3 10 chr12 105770280 105770580 -38015875 + AluSg SINE Alu 1 298 -12 1467 165 26 68 chr12 105770845 105771154 -38015301 - AluJo SINE Alu -16 296 1 2113 124 13 0 chr12 105772393 105772692 -38013763 + AluY SINE Alu 1 303 -8 464 250 149 22 chr12 105772891 105773252 -38013203 - L1ME LINE L1 -460 5702 5296 331 308 53 0 chr12 105773275 105773408 -38013047 - L1ME1 LINE L1 -810 5336 5197 1793 161 4 4 chr12 105773543 105773816 -38012639 - AluJo SINE Alu -37 275 3 772 158 68 7 chr12 105774556 105774702 -38011753 - MER5A DNA MER1_type -33 156 2 290 25 0 25 chr12 105775109 105775149 -38011306 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2063 123 0 7 chr12 105775152 105775437 -38011018 - AluSx SINE Alu -29 283 1 216 241 0 19 chr12 105775752 105775806 -38010649 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 371 84 0 chr12 105777150 105777293 -38009162 + MIR3 SINE MIR 31 185 -23 2423 98 0 0 chr12 105777321 105777627 -38008828 + AluSg SINE Alu 1 306 -4 424 261 42 8 chr12 105777629 105777748 -38008707 + L2 LINE L2 3188 3310 -3 250 154 39 0 chr12 105779054 105779106 -38007349 + L1MC4a LINE L1 5885 5938 -1870 180 0 0 0 chr12 105779107 105779127 -38007328 + (TG)n Simple_repeat Simple_repeat 2 21 0 1387 50 0 16 chr12 105779184 105779366 -38007089 + L1PA8 LINE L1 5991 6169 -3 534 226 166 25 chr12 105779526 105779725 -38006730 + MIR SINE MIR 26 252 -10 2079 134 3 16 chr12 105779861 105780175 -38006280 + AluSg SINE Alu 1 310 0 204 364 17 8 chr12 105780987 105781105 -38005350 + MER5B DNA MER1_type 28 146 -32 2010 134 14 0 chr12 105781219 105781509 -38004946 - AluJb SINE Alu -18 294 1 27 0 0 0 chr12 105781516 105781543 -38004912 + AT_rich Low_complexity Low_complexity 1 27 0 321 252 78 0 chr12 105783647 105783750 -38002705 + MIR SINE MIR 101 211 -51 1912 214 81 8 chr12 105783856 105784327 -38002128 + LTR22 LTR ERVK 1 505 -4 5502 110 5 0 chr12 105784333 105785069 -38001386 + HERVK22 LTR ERVK 2 741 -6096 5816 91 8 28 chr12 105785506 105786331 -38000124 + HERVK22 LTR ERVK 2673 3481 -3356 * 24330 79 14 6 chr12 105786320 105789463 -37996992 + HERVK22 LTR ERVK 3670 6837 0 1945 205 66 25 chr12 105789465 105789948 -37996507 + LTR22 LTR ERVK 3 505 -4 1078 147 127 25 chr12 105790627 105790824 -37995631 + 7SLRNA srpRNA srpRNA 95 311 -9 2098 113 7 14 chr12 105790826 105791118 -37995337 + AluSg1 SINE Alu 1 290 -19 28 0 0 0 chr12 105792878 105792906 -37993549 + AT_rich Low_complexity Low_complexity 1 28 0 2233 97 10 0 chr12 105793007 105793296 -37993159 + AluSp SINE Alu 1 292 -21 230 235 0 82 chr12 105794855 105794953 -37991502 - L1MC4 LINE L1 -1339 6703 6614 2283 94 0 10 chr12 105796136 105796433 -37990022 + AluSq SINE Alu 1 294 -19 1184 144 0 17 chr12 105796446 105796627 -37989828 + AluJb SINE Alu 129 306 -6 1803 179 72 24 chr12 105796651 105797065 -37989390 + Charlie4a DNA MER1_type 69 502 -6 570 182 0 0 chr12 105797412 105797511 -37988944 + AluSg/x SINE Alu 205 303 -9 1197 126 5 51 chr12 105797513 105797728 -37988727 - LTR24C LTR ERV1 -426 209 5 1448 186 40 11 chr12 105797737 105798012 -37988443 - AluJb SINE Alu -29 283 1 583 188 0 10 chr12 105798030 105798131 -37988324 - LTR23 LTR ERV1 -40 397 298 1779 148 7 26 chr12 105798131 105798436 -37988019 - AluJb SINE Alu -3 309 11 2340 100 0 3 chr12 105800239 105800540 -37985915 - AluSq SINE Alu -13 300 1 470 149 234 0 chr12 105800559 105800653 -37985802 + MER63 DNA MER1_type 7 748 -314 3499 117 48 83 chr12 105800655 105800851 -37985604 - MER4E LTR ERV1 0 779 578 2544 53 3 7 chr12 105800851 105801155 -37985300 + AluY SINE Alu 1 303 -8 3499 117 48 83 chr12 105801155 105801166 -37985289 - MER4E LTR ERV1 -201 578 568 2236 98 3 3 chr12 105801166 105801451 -37985004 + AluSg SINE Alu 1 285 -25 3499 117 48 83 chr12 105801451 105801470 -37984985 - MER4E LTR ERV1 -211 568 550 2353 94 0 0 chr12 105801470 105801756 -37984699 + AluSc SINE Alu 1 286 -23 3499 117 48 83 chr12 105801756 105802176 -37984279 - MER4E LTR ERV1 -229 550 154 2559 175 23 11 chr12 105802171 105802647 -37983808 + MER41B LTR ERV1 100 466 -12 * 4018 155 113 28 chr12 105802689 105803450 -37983005 + LTR1B LTR ERV1 1 826 0 21 0 0 0 chr12 105803482 105803503 -37982952 + AT_rich Low_complexity Low_complexity 1 21 0 240 273 109 0 chr12 105803658 105803768 -37982687 - MIR SINE MIR -100 162 41 1991 109 71 0 chr12 105803925 105804208 -37982247 + AluSx SINE Alu 1 303 -9 2170 170 25 5 chr12 105804386 105804781 -37981674 - MER57A LTR ERV1 0 403 1 2117 83 7 14 chr12 105804789 105805065 -37981390 - AluSx SINE Alu -16 296 23 289 267 20 50 chr12 105805209 105805357 -37981098 - MIR SINE MIR -66 142 33 2119 105 20 7 chr12 105805589 105805895 -37980560 + AluSg SINE Alu 1 310 0 214 207 0 66 chr12 105806081 105806202 -37980253 + (CCCGG)n Simple_repeat Simple_repeat 3 115 0 236 104 0 42 chr12 105807628 105807676 -37978779 + LTR66 LTR ERVL 394 439 -171 283 187 0 27 chr12 105807680 105807755 -37978700 + (TA)n Simple_repeat Simple_repeat 2 74 0 838 100 33 0 chr12 105807760 105807880 -37978575 - AluSq/x SINE Alu -187 125 2 713 203 68 26 chr12 105808002 105808194 -37978261 - MER105 DNA DNA -3 201 2 225 0 0 0 chr12 105808328 105808353 -37978102 + (TA)n Simple_repeat Simple_repeat 2 26 0 2360 95 7 0 chr12 105808353 105808659 -37977796 - AluSp SINE Alu -5 308 1 621 228 198 8 chr12 105809140 105809377 -37977078 + L2 LINE L2 3029 3310 -3 246 62 0 0 chr12 105810196 105810228 -37976227 + (TG)n Simple_repeat Simple_repeat 2 33 0 1116 177 19 14 chr12 105810458 105810673 -37975782 + MER20 DNA MER1_type 1 216 -3 513 174 7 5 chr12 105810896 105811044 -37975411 - MER20 DNA MER1_type 0 219 3 910 155 0 7 chr12 105811464 105811606 -37974849 + AluJb SINE Alu 1 141 -171 2413 99 3 0 chr12 105811972 105812284 -37974171 + AluSp SINE Alu 1 313 0 23 0 0 0 chr12 105812740 105812763 -37973692 + AT_rich Low_complexity Low_complexity 1 23 0 2361 102 0 0 chr12 105812857 105813152 -37973303 - AluSg SINE Alu -15 295 1 1460 252 110 60 chr12 105813215 105813516 -37972939 - L2 LINE L2 -6 3307 3022 2088 134 23 0 chr12 105813516 105813821 -37972634 + AluSx SINE Alu 1 312 0 1460 252 110 60 chr12 105813821 105814451 -37972004 - L2 LINE L2 -291 3022 2327 2171 110 0 39 chr12 105814451 105814760 -37971695 - AluSx SINE Alu -15 297 1 1460 252 110 60 chr12 105814760 105814789 -37971666 - L2 LINE L2 -986 2327 2301 1477 156 127 26 chr12 105814975 105815283 -37971172 - MER44D DNA MER2_type 0 609 1 189 273 57 68 chr12 105815409 105815497 -37970958 - MIR SINE MIR -113 149 63 2143 130 85 93 chr12 105815743 105815810 -37970645 - MSTB2 LTR MaLR 0 457 391 2232 86 4 0 chr12 105815810 105816121 -37970334 - AluY SINE Alu 0 312 1 2095 136 3 3 chr12 105816123 105816418 -37970037 - AluSx SINE Alu -17 295 1 2143 130 85 93 chr12 105816418 105816806 -37969649 - MSTB2 LTR MaLR -67 390 2 2260 94 7 7 chr12 105816991 105817288 -37969167 + AluSx SINE Alu 1 297 -15 53 17 0 0 chr12 105817698 105817758 -37968697 + AT_rich Low_complexity Low_complexity 1 60 0 1508 164 0 0 chr12 105817758 105817983 -37968472 - AluJb SINE Alu -16 296 72 639 39 0 0 chr12 105818043 105818121 -37968334 + (TC)n Simple_repeat Simple_repeat 2 79 0 309 51 0 0 chr12 105818122 105818161 -37968294 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2029 104 31 28 chr12 105818161 105818449 -37968006 - AluSq SINE Alu -24 289 1 2079 112 3 14 chr12 105818823 105819110 -37967345 + AluSx SINE Alu 1 284 -28 368 252 29 19 chr12 105819564 105819667 -37966788 + L2 LINE L2 3209 3312 -1 228 178 0 0 chr12 105820673 105820718 -37965737 - AluJb SINE Alu -1 298 254 1567 202 3 3 chr12 105821070 105821352 -37965103 - AluJo SINE Alu -30 282 1 23 33 0 0 chr12 105822456 105822486 -37963969 + AT_rich Low_complexity Low_complexity 1 30 0 181 316 34 51 chr12 105822837 105822954 -37963501 + L2 LINE L2 2936 3050 -222 734 173 16 0 chr12 105822970 105823097 -37963358 - FLAM_C SINE Alu -2 131 3 250 299 78 19 chr12 105823198 105823352 -37963103 + L2 LINE L2 3128 3290 -23 1543 185 11 4 chr12 105823445 105823715 -37962740 - AluJb SINE Alu -40 272 1 2295 94 0 13 chr12 105823726 105824033 -37962422 - AluSx SINE Alu -9 303 1 456 111 0 0 chr12 105824065 105824146 -37962309 + (TA)n Simple_repeat Simple_repeat 1 81 0 1807 148 7 40 chr12 105824149 105824310 -37962145 - AluJo SINE Alu -18 294 146 2094 132 0 10 chr12 105824310 105824620 -37961835 - AluSg SINE Alu -3 307 1 1807 148 7 40 chr12 105824620 105824762 -37961693 - AluJo SINE Alu -166 146 1 1377 183 19 70 chr12 105824784 105825096 -37961359 - AluJo SINE Alu -11 301 6 436 217 98 0 chr12 105825103 105825195 -37961260 - Charlie8 DNA MER1_type -2308 109 9 1424 120 28 81 chr12 105825431 105825715 -37960740 + MER21A LTR ERV1 656 924 -7 493 256 40 11 chr12 105825723 105825899 -37960556 + L2 LINE L2 3126 3306 -7 307 299 211 26 chr12 105825878 105826229 -37960226 - L2 LINE L2 -10 3303 2888 * 460 197 179 0 chr12 105826360 105826477 -37959978 + MER58A DNA MER1_type 1 138 0 348 261 84 11 chr12 105826657 105826788 -37959667 + MIR3 SINE MIR 31 165 -43 714 195 23 0 chr12 105826963 105827091 -37959364 - FLAM_A SINE Alu -2 131 1 230 157 0 20 chr12 105827111 105827162 -37959293 + (TA)n Simple_repeat Simple_repeat 2 51 0 3084 213 58 64 chr12 105827176 105827242 -37959213 - L1ME1 LINE L1 -5 6161 6096 2248 92 7 0 chr12 105827242 105827534 -37958921 - AluSp SINE Alu -19 294 1 3084 213 58 64 chr12 105827534 105827702 -37958753 - L1ME1 LINE L1 -70 6096 5928 2266 121 0 6 chr12 105827702 105828017 -37958438 - AluSp SINE Alu 0 313 1 3084 213 58 64 chr12 105828017 105828265 -37958190 - L1ME1 LINE L1 -238 5928 5680 195 42 0 0 chr12 105828265 105828289 -37958166 + (TC)n Simple_repeat Simple_repeat 2 25 0 3084 213 58 64 chr12 105828289 105828683 -37957772 - L1ME1 LINE L1 -486 5680 5285 2174 114 13 3 chr12 105828683 105828989 -37957466 - AluSx SINE Alu -3 309 1 3084 213 58 64 chr12 105828989 105829945 -37956510 - L1ME1 LINE L1 -881 5285 4324 183 42 0 0 chr12 105829945 105829969 -37956486 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2173 112 0 3 chr12 105829976 105830262 -37956193 - AluSg SINE Alu -25 285 1 3084 213 58 64 chr12 105830262 105830273 -37956182 - L1ME1 LINE L1 -1848 4318 4312 1607 160 71 15 chr12 105830339 105830664 -37955791 - L1MC3 LINE L1 0 7785 7443 270 0 0 0 chr12 105830664 105830694 -37955761 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1025 171 6 6 chr12 105830698 105830862 -37955593 - AluJb SINE Alu -37 275 112 439 156 0 0 chr12 105830883 105830960 -37955495 - L1MC3 LINE L1 -331 7454 7378 25 31 0 0 chr12 105830960 105830992 -37955463 + AT_rich Low_complexity Low_complexity 1 32 0 268 316 29 29 chr12 105831141 105831280 -37955175 + MER5B DNA MER1_type 3 141 -37 1675 122 6 113 chr12 105831282 105831618 -37954837 + AluJo SINE Alu 1 300 -12 1271 175 136 128 chr12 105831650 105831866 -37954589 - L1MC3 LINE L1 -392 7393 7180 249 237 17 0 chr12 105831866 105831925 -37954530 - MLT1F1 LTR MaLR -456 111 52 1271 175 136 128 chr12 105831925 105832158 -37954297 - L1MC3 LINE L1 -605 7180 6882 * 2032 236 20 27 chr12 105832154 105832604 -37953851 - L1ME1 LINE L1 -1819 4327 3875 1381 187 106 7 chr12 105832604 105832888 -37953567 - AluJo SINE Alu 0 312 1 2117 108 34 10 chr12 105832891 105833188 -37953267 - AluSx SINE Alu -8 304 1 2032 236 20 27 chr12 105833188 105833288 -37953167 - L1ME1 LINE L1 -2273 3873 3777 1748 175 26 3 chr12 105833293 105833596 -37952859 - AluJb SINE Alu -2 310 1 2002 147 3 3 chr12 105833666 105833959 -37952496 - AluSx SINE Alu -19 293 1 739 189 0 0 chr12 105835275 105835407 -37951048 - FLAM_C SINE Alu -1 132 1 556 247 80 0 chr12 105835421 105835571 -37950884 - MIR SINE MIR 0 262 101 2003 101 54 7 chr12 105835611 105835889 -37950566 - AluSx SINE Alu -21 291 1 1856 183 0 0 chr12 105835898 105836193 -37950262 - AluJb SINE Alu -16 296 2 1047 76 0 0 chr12 105836202 105836333 -37950122 - AluSc SINE Alu -8 301 171 180 0 0 0 chr12 105836403 105836423 -37950032 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1576 167 12 85 chr12 105836557 105836886 -37949569 - AluJb SINE Alu -7 305 1 1244 176 130 42 chr12 105837041 105837175 -37949280 + AluJo SINE Alu 1 122 -190 2111 98 0 14 chr12 105837175 105837452 -37949003 + AluSg SINE Alu 1 273 -37 229 26 53 0 chr12 105837456 105837494 -37948961 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1244 176 130 42 chr12 105837494 105837616 -37948839 + AluJo SINE Alu 124 285 -27 967 138 96 12 chr12 105837636 105837803 -37948652 + AluJb SINE Alu 132 312 0 379 317 114 9 chr12 105837850 105838077 -37948378 - L1ME4a LINE L1 -187 5934 5684 414 331 229 31 chr12 105838296 105838589 -37947866 + L2 LINE L2 2915 3265 -7 319 314 83 24 chr12 105839103 105839272 -37947183 + MIR SINE MIR 74 252 -10 2037 139 3 7 chr12 105839298 105839600 -37946855 - AluSx SINE Alu -11 301 1 2595 126 19 17 chr12 105839600 105839711 -37946744 - L1MA3 LINE L1 -120 6185 6076 1484 128 179 40 chr12 105839711 105839868 -37946587 - THE1C LTR MaLR 0 375 241 495 0 0 0 chr12 105839868 105839923 -37946532 + (GA)n Simple_repeat Simple_repeat 1 55 0 1484 128 179 40 chr12 105839923 105840094 -37946361 - THE1C LTR MaLR -134 241 1 2595 126 19 17 chr12 105840094 105840448 -37946007 - L1MA3 LINE L1 -229 6076 5715 21 89 0 0 chr12 105840771 105840827 -37945628 + AT_rich Low_complexity Low_complexity 1 56 0 26 50 0 0 chr12 105840921 105840961 -37945494 + AT_rich Low_complexity Low_complexity 1 40 0 1791 161 0 24 chr12 105841042 105841334 -37945121 + AluJb SINE Alu 2 286 -26 1821 102 0 19 chr12 105841421 105841677 -37944778 - AluSc SINE Alu -6 303 53 200 146 0 21 chr12 105841713 105841761 -37944694 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2136 114 13 10 chr12 105841770 105842076 -37944379 - AluSx SINE Alu -5 307 1 5311 142 16 73 chr12 105842320 105844354 -37942101 - L1PB3 LINE L1 0 6154 4250 2137 142 3 0 chr12 105844579 105844889 -37941566 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr12 105846360 105846382 -37940073 + AT_rich Low_complexity Low_complexity 1 22 0 2175 110 3 10 chr12 105846671 105846972 -37939483 + AluSx SINE Alu 1 299 -13 1872 150 14 0 chr12 105846983 105847270 -37939185 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr12 105847437 105847458 -37938997 + AT_rich Low_complexity Low_complexity 1 21 0 323 267 19 48 chr12 105848193 105848298 -37938157 - MER5A DNA MER1_type -6 183 82 1712 163 4 7 chr12 105848377 105848654 -37937801 - AluJo SINE Alu -36 276 1 1889 149 0 7 chr12 105848758 105849053 -37937402 - AluJb SINE Alu -10 302 10 26 0 0 0 chr12 105849077 105849103 -37937352 + AT_rich Low_complexity Low_complexity 1 26 0 1747 164 23 20 chr12 105849132 105849301 -37937154 - AluJo SINE Alu -7 305 138 255 61 0 0 chr12 105849301 105849334 -37937121 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 1442 207 52 0 chr12 105849334 105849604 -37936851 - AluJo SINE Alu -28 284 1 1747 164 23 20 chr12 105849604 105849737 -37936718 - AluJo SINE Alu -173 139 1 23 54 0 0 chr12 105849747 105849784 -37936671 + AT_rich Low_complexity Low_complexity 1 37 0 2052 120 13 10 chr12 105849791 105850092 -37936363 + AluSx SINE Alu 3 304 -8 351 127 0 0 chr12 105850107 105850170 -37936285 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1825 157 0 24 chr12 105850171 105850464 -37935991 - AluSx SINE Alu -26 286 1 1797 154 0 11 chr12 105850866 105851151 -37935304 - AluJb SINE Alu -30 282 1 1332 219 7 7 chr12 105851974 105852243 -37934212 - AluJb SINE Alu 0 312 44 1948 152 0 7 chr12 105852245 105852547 -37933908 - AluJo SINE Alu -12 300 1 260 326 11 22 chr12 105852720 105852809 -37933646 + L2 LINE L2 3166 3253 -19 2065 111 3 10 chr12 105852817 105853114 -37933341 - AluSx SINE Alu -17 295 1 22 0 0 0 chr12 105854031 105854053 -37932402 + AT_rich Low_complexity Low_complexity 1 22 0 1746 158 14 10 chr12 105854218 105854509 -37931946 - AluSx SINE Alu -20 292 1 1295 224 54 24 chr12 105854677 105854972 -37931483 + AluJb SINE Alu 5 308 -4 542 296 28 32 chr12 105855319 105855566 -37930889 + Charlie2 DNA MER1_type 78 323 -2459 998 214 66 14 chr12 105855577 105855866 -37930589 + Charlie2 DNA MER1_type 1898 2201 -661 1867 138 0 11 chr12 105856998 105857274 -37929181 + AluSx SINE Alu 24 296 -16 2353 83 0 10 chr12 105857279 105857591 -37928864 + AluY SINE Alu 1 309 -2 2291 89 7 7 chr12 105857596 105857900 -37928555 + AluSg SINE Alu 1 304 -6 1062 136 65 0 chr12 105857900 105858054 -37928401 + AluSg/x SINE Alu 134 297 -15 1787 134 51 43 chr12 105858952 105859302 -37927153 - THE1A LTR MaLR -2 353 1 21 36 0 0 chr12 105859340 105859368 -37927087 + AT_rich Low_complexity Low_complexity 1 28 0 2243 104 0 3 chr12 105859497 105859794 -37926661 - AluSx SINE Alu -3 309 14 204 270 22 67 chr12 105860817 105860838 -37925617 - L2 LINE L2 -516 2798 2782 249 253 74 42 chr12 105860838 105860933 -37925522 - MER5A DNA MER1_type -3 186 89 871 223 131 23 chr12 105861365 105861670 -37924785 + MER46C DNA MER2_type 1 338 0 230 103 0 51 chr12 105861842 105861881 -37924574 + MIR SINE MIR 74 110 -152 2496 70 0 0 chr12 105861903 105862205 -37924250 - AluSg SINE Alu -8 302 1 819 203 69 51 chr12 105862252 105862469 -37923986 + MIR SINE MIR 41 261 -1 295 324 95 9 chr12 105862472 105862577 -37923878 + L2 LINE L2 3155 3268 -4 32 43 0 0 chr12 105863135 105863181 -37923274 + AT_rich Low_complexity Low_complexity 1 46 0 453 167 176 46 chr12 105863752 105863860 -37922595 - AluJ SINE Alu -61 251 130 432 0 0 0 chr12 105864657 105864705 -37921750 + (TG)n Simple_repeat Simple_repeat 1 48 0 767 136 0 50 chr12 105864734 105864874 -37921581 - AluJ SINE Alu -169 133 1 2249 114 0 0 chr12 105864879 105865177 -37921278 - AluSx SINE Alu -14 298 1 334 88 0 18 chr12 105865316 105865373 -37921082 - L1MA5 LINE L1 0 6300 6245 1049 161 89 34 chr12 105865413 105865698 -37920757 - L1MA5 LINE L1 -47 6253 5935 5355 159 25 3 chr12 105866300 105867677 -37918778 + L1PA15 LINE L1 4761 6165 0 402 264 62 14 chr12 105867704 105867848 -37918607 - MER77 LTR ERV1 -4 601 451 2360 105 5 72 chr12 105867862 105868252 -37918203 - THE1B LTR MaLR 0 364 1 10342 84 7 69 chr12 105868252 105868636 -37917819 - THE1B-int LTR MaLR 0 1580 1174 729 92 0 0 chr12 105868636 105868734 -37917721 + AluY SINE Alu 205 302 -9 10342 84 7 69 chr12 105868734 105869937 -37916518 - THE1B-int LTR MaLR -406 1174 1 2329 124 11 27 chr12 105869937 105870307 -37916148 - THE1B LTR MaLR 0 364 1 2249 151 63 19 chr12 105870617 105871027 -37915428 - MSTA LTR MaLR 0 428 1 1103 192 23 19 chr12 105871424 105871638 -37914817 + MER20 DNA MER1_type 1 215 -4 1091 143 52 94 chr12 105871710 105871997 -37914458 - MER7A DNA MER2_type -71 275 3 2108 141 0 3 chr12 105872390 105872695 -37913760 + AluSx SINE Alu 1 304 -8 1412 165 11 8 chr12 105872957 105873218 -37913237 - L1PA16 LINE L1 0 6166 5905 4908 178 107 23 chr12 105873218 105873774 -37912681 - L1P4 LINE L1 -653 5513 5005 2499 68 0 0 chr12 105873774 105874068 -37912387 + AluSg SINE Alu 1 294 -16 4908 178 107 23 chr12 105874068 105874473 -37911982 - L1P4 LINE L1 -1161 5005 4636 2087 136 17 0 chr12 105874473 105874767 -37911688 - AluSx SINE Alu -13 299 1 4908 178 107 23 chr12 105874767 105874816 -37911639 - L1P4 LINE L1 -1530 4636 4593 240 35 0 0 chr12 105874816 105874845 -37911610 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4908 178 107 23 chr12 105874845 105875368 -37911087 - L1P4 LINE L1 -1573 4593 3834 26 0 0 0 chr12 105875431 105875457 -37910998 + AT_rich Low_complexity Low_complexity 1 26 0 189 107 0 0 chr12 105875491 105875519 -37910936 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 428 18 18 0 chr12 105875522 105875577 -37910878 - MADE1 DNA Mariner -24 56 1 1014 113 0 0 chr12 105875584 105875717 -37910738 + AluSq/x SINE Alu 1 133 -180 398 224 24 0 chr12 105875752 105875837 -37910618 - L1MB4 LINE L1 -70 6110 6024 777 177 0 0 chr12 105876535 105876659 -37909796 - FLAM_C SINE Alu -9 124 1 2177 124 0 10 chr12 105876790 105877104 -37909351 - AluSx SINE Alu 0 312 2 2017 155 0 0 chr12 105877565 105877869 -37908586 - AluSx SINE Alu -8 304 1 22 35 0 0 chr12 105878047 105878076 -37908379 + AT_rich Low_complexity Low_complexity 1 29 0 1638 149 45 42 chr12 105878080 105878368 -37908087 - AluSx SINE Alu -19 293 5 1778 117 113 0 chr12 105878527 105878793 -37907662 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 105878793 105878815 -37907640 + AT_rich Low_complexity Low_complexity 1 22 0 222 299 67 67 chr12 105878927 105879061 -37907394 - MIR SINE MIR -127 135 2 37 23 0 0 chr12 105879173 105879217 -37907238 + AT_rich Low_complexity Low_complexity 1 44 0 2637 93 3 3 chr12 105879217 105879592 -37906863 - L1PB1 LINE L1 -1 6150 5776 234 188 0 0 chr12 105879598 105879646 -37906809 - L1MC4 LINE L1 -1343 6699 6652 3603 168 18 35 chr12 105879674 105879859 -37906596 - L1P5 LINE L1 -369 6498 6311 1647 164 89 0 chr12 105879859 105880128 -37906327 - AluSg SINE Alu -17 293 1 3603 168 18 35 chr12 105880128 105881358 -37905097 - L1P5 LINE L1 -556 6311 5108 5387 208 9 11 chr12 105881358 105882267 -37904188 - L1 LINE L1 -2619 4243 3335 2290 82 0 36 chr12 105882267 105882572 -37903883 - AluY SINE Alu -17 294 1 5387 208 9 11 chr12 105882572 105882977 -37903478 - L1 LINE L1 -3527 3335 2931 4256 72 14 36 chr12 105882981 105884045 -37902410 - MER11A LTR ERVK 0 1266 1 7801 135 46 9 chr12 105884045 105885348 -37901107 - L1P5 LINE L1 -3935 2928 1562 2356 103 6 0 chr12 105885348 105885659 -37900796 - AluSp SINE Alu 0 313 1 7801 135 46 9 chr12 105885659 105885837 -37900618 - L1P5 LINE L1 -5301 1562 1392 796 237 5 0 chr12 105885834 105886024 -37900431 - L1P5 LINE L1 -6666 197 7 * 1746 184 13 10 chr12 105886094 105886404 -37900051 - AluJo SINE Alu -1 311 1 1938 159 50 19 chr12 105886839 105887217 -37899238 - MLT1B LTR MaLR 0 390 1 2643 36 3 0 chr12 105887403 105887707 -37898748 - AluY SINE Alu -6 305 1 200 139 0 28 chr12 105888115 105888151 -37898304 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 24 100 0 0 chr12 105888759 105888839 -37897616 + AT_rich Low_complexity Low_complexity 1 80 0 22 0 0 0 chr12 105891075 105891097 -37895358 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 105891661 105891715 -37894740 + AT_rich Low_complexity Low_complexity 1 54 0 1970 140 40 0 chr12 105892228 105892528 -37893927 - AluSx SINE Alu 0 312 1 22 80 0 0 chr12 105892601 105892651 -37893804 + AT_rich Low_complexity Low_complexity 1 50 0 747 41 51 0 chr12 105892695 105892793 -37893662 - MSTD LTR MaLR -7 389 287 585 245 94 13 chr12 105892836 105892995 -37893460 - MSTD LTR MaLR -193 172 1 432 259 164 17 chr12 105893043 105893238 -37893217 - MIR SINE MIR 0 262 42 470 222 34 26 chr12 105893254 105893371 -37893084 - MIR SINE MIR -88 174 57 2162 138 0 0 chr12 105893384 105893689 -37892766 - AluSq SINE Alu -8 305 1 851 230 90 5 chr12 105893715 105893915 -37892540 - MIR SINE MIR -26 236 20 555 294 67 47 chr12 105894058 105894313 -37892142 - MIR SINE MIR 0 262 3 23 33 0 0 chr12 105894601 105894631 -37891824 + AT_rich Low_complexity Low_complexity 1 30 0 490 266 151 34 chr12 105894632 105895102 -37891353 - L1ME4a LINE L1 -15 6106 5582 301 217 24 12 chr12 105895367 105895450 -37891005 - L1ME4a LINE L1 -92 6029 5946 259 301 0 0 chr12 105895465 105895551 -37890904 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 2191 107 0 10 chr12 105895671 105895961 -37890494 - AluSx SINE Alu -25 287 1 2384 94 0 0 chr12 105895991 105896300 -37890155 + AluY SINE Alu 1 309 -2 190 397 30 15 chr12 105896314 105896445 -37890010 + L2 LINE L2 2704 2836 -478 28 0 0 0 chr12 105896578 105896606 -37889849 + AT_rich Low_complexity Low_complexity 1 28 0 1941 113 80 0 chr12 105896741 105897015 -37889440 + AluSx SINE Alu 1 296 -16 1731 150 46 4 chr12 105897028 105897308 -37889147 - AluJb SINE Alu -18 294 3 278 299 46 11 chr12 105897442 105897529 -37888926 - L2 LINE L2 -3 3310 3221 * 588 193 58 35 chr12 105897508 105897679 -37888776 + MER5C DNA MER1_type 150 324 0 1334 161 9 5 chr12 105898244 105898467 -37887988 - AluJo SINE Alu -2 310 87 21 0 0 0 chr12 105898921 105898942 -37887513 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr12 105899393 105899440 -37887015 + AT_rich Low_complexity Low_complexity 1 47 0 363 23 0 0 chr12 105900272 105900316 -37886139 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 31 0 0 chr12 105900316 105900348 -37886107 + (TC)n Simple_repeat Simple_repeat 1 32 0 28 48 0 0 chr12 105901126 105901168 -37885287 + AT_rich Low_complexity Low_complexity 1 42 0 2113 128 0 3 chr12 105901571 105901868 -37884587 - AluSq SINE Alu -17 296 1 9613 70 19 0 chr12 105902345 105904406 -37882049 - L1PA6 LINE L1 0 6154 4069 210 37 0 0 chr12 105904977 105905004 -37881451 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 470 252 56 7 chr12 105905657 105905800 -37880655 + L1M4 LINE L1 4806 4955 -1191 1671 142 135 34 chr12 105905810 105905985 -37880470 - Tigger1 DNA MER2_type 0 2418 2262 2111 129 3 0 chr12 105905985 105906280 -37880175 + AluSx SINE Alu 1 296 -16 1671 142 135 34 chr12 105906280 105906429 -37880026 - Tigger1 DNA MER2_type -156 2262 2061 494 237 14 7 chr12 105906430 105906569 -37879886 - L1M4 LINE L1 -1011 5135 4996 4618 208 52 49 chr12 105906607 105907349 -37879106 - L1M4 LINE L1 -1310 4836 4087 2511 72 0 0 chr12 105907349 105907654 -37878801 + AluSc SINE Alu 1 305 -4 4618 208 52 49 chr12 105907654 105908362 -37878093 - L1M4 LINE L1 -2059 4087 3382 2016 102 17 31 chr12 105908368 105908684 -37877771 - AluSx SINE Alu 0 312 1 818 162 7 0 chr12 105908696 105908832 -37877623 - FLAM_C SINE Alu -3 140 4 321 277 108 0 chr12 105908834 105908982 -37877473 - L1M4 LINE L1 -2758 3388 3225 292 244 12 35 chr12 105909565 105909651 -37876804 - L2 LINE L2 -1 3271 3188 298 310 134 45 chr12 105910417 105910452 -37876003 - L2 LINE L2 -981 2333 2303 2393 89 0 0 chr12 105910452 105910745 -37875710 + AluSp SINE Alu 5 297 -16 298 310 134 45 chr12 105910745 105911067 -37875388 - L2 LINE L2 -1011 2303 1944 310 233 39 58 chr12 105911120 105911223 -37875232 - L1ME LINE L1 -491 5630 5530 24 77 0 0 chr12 105911909 105911961 -37874494 + AT_rich Low_complexity Low_complexity 1 52 0 26 50 0 0 chr12 105912263 105912303 -37874152 + AT_rich Low_complexity Low_complexity 1 40 0 2253 116 0 3 chr12 105913249 105913560 -37872895 - AluSq SINE Alu -3 310 1 4074 133 43 59 chr12 105914292 105915142 -37871313 - L1MA8 LINE L1 -5 6286 5450 2140 120 13 0 chr12 105915253 105915552 -37870903 + AluSx SINE Alu 1 303 -9 559 301 121 11 chr12 105915760 105916032 -37870423 + L2 LINE L2 2400 2701 -613 809 319 14 77 chr12 105916379 105916743 -37869712 + L2 LINE L2 2931 3271 -1 1505 170 96 0 chr12 105917339 105917609 -37868846 - AluJo SINE Alu -16 296 1 2070 120 7 17 chr12 105917621 105917922 -37868533 - AluSx SINE Alu -14 298 1 2365 102 0 0 chr12 105918677 105918982 -37867473 + AluSx SINE Alu 1 305 -7 2116 121 3 7 chr12 105918995 105919292 -37867163 + AluSx SINE Alu 1 296 -16 2131 110 7 7 chr12 105919376 105919676 -37866779 + AluSx SINE Alu 3 302 -10 1742 149 22 4 chr12 105919854 105920123 -37866332 + AluJo SINE Alu 9 282 -30 219 69 0 0 chr12 105920128 105920157 -37866298 + (CAA)n Simple_repeat Simple_repeat 2 30 0 456 313 65 26 chr12 105920967 105921197 -37865258 + MER8 DNA MER2_type 1 239 0 639 289 226 15 chr12 105921247 105921649 -37864806 - L3 LINE CR1 0 1577 1091 577 274 199 22 chr12 105921653 105922015 -37864440 - MLT1L LTR MaLR 0 615 190 2143 115 3 0 chr12 105922038 105922334 -37864121 + AluSp SINE Alu 1 297 -16 6166 104 51 106 chr12 105922497 105922896 -37863559 + Tigger3b DNA MER2_type 14 433 -2595 1865 158 3 10 chr12 105922896 105923193 -37863262 - AluJb SINE Alu -17 295 1 6166 104 51 106 chr12 105923193 105924080 -37862375 + Tigger3b DNA MER2_type 433 1230 -1 478 370 144 17 chr12 105924129 105924421 -37862034 - L2 LINE L2 -3 3269 2941 235 335 91 37 chr12 105924452 105924694 -37861761 - L3 LINE CR1 -535 1042 788 905 189 61 17 chr12 105924709 105924889 -37861566 - MER58A DNA MER1_type 0 224 37 5226 80 30 45 chr12 105925144 105925342 -37861113 - L1PB1 LINE L1 -1 6866 6667 2136 94 3 17 chr12 105925342 105925630 -37860825 - AluSp SINE Alu -29 284 1 5226 80 30 45 chr12 105925630 105925922 -37860533 - L1PB1 LINE L1 -200 6667 6372 2166 119 3 3 chr12 105925922 105926217 -37860238 - AluSq SINE Alu -18 295 1 5226 80 30 45 chr12 105926217 105926534 -37859921 - L1PB1 LINE L1 -495 6372 6070 2119 203 0 4 chr12 105926529 105927001 -37859454 - L1PB1 LINE L1 -1024 5838 5369 * 1732 153 66 3 chr12 105927014 105927334 -37859121 - L1PB1 LINE L1 -6521 342 3 2310 77 0 3 chr12 105927701 105928009 -37858446 - AluY SINE Alu 0 307 1 26 0 0 0 chr12 105928009 105928035 -37858420 + AT_rich Low_complexity Low_complexity 1 26 0 675 178 33 33 chr12 105928043 105928195 -37858260 - FRAM SINE Alu -25 151 1 2045 200 65 77 chr12 105928198 105928832 -37857623 - MLT1E2 LTR MaLR 0 626 1 732 272 20 4 chr12 105929025 105929275 -37857180 - L1ME4a LINE L1 -237 5884 5631 3039 86 64 7 chr12 105929602 105930042 -37856413 + MER4C LTR ERV1 1 465 0 2205 125 0 0 chr12 105930260 105930565 -37855890 - AluSx SINE Alu -1 311 7 262 219 47 0 chr12 105930629 105930693 -37855762 + MLT1J LTR MaLR 13 79 -432 301 287 11 11 chr12 105930703 105930797 -37855658 - L1MC4 LINE L1 -1335 6707 6614 225 236 28 0 chr12 105930797 105930869 -37855586 + (TA)n Simple_repeat Simple_repeat 2 75 0 441 286 171 0 chr12 105930869 105931009 -37855446 + MLT1J LTR MaLR 98 261 -250 1320 211 84 166 chr12 105931036 105931842 -37854613 - L2 LINE L2 -1262 2052 1313 2096 129 7 7 chr12 105931845 105932148 -37854307 + AluSx SINE Alu 1 303 -9 356 330 0 0 chr12 105932148 105932251 -37854204 - L2 LINE L2 -2087 1227 1125 183 42 0 0 chr12 105932254 105932278 -37854177 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 852 9 0 44 chr12 105932281 105932395 -37854060 - L1PA5 LINE L1 -13 6141 6033 2181 88 0 7 chr12 105932733 105933027 -37853428 + AluY SINE Alu 18 309 -2 320 280 0 0 chr12 105933035 105933135 -37853320 + L1ME LINE L1 3387 3486 -2660 2076 135 7 0 chr12 105933265 105933562 -37852893 + AluSq SINE Alu 1 299 -14 1591 204 134 7 chr12 105933677 105934214 -37852241 - LTR50 LTR ERVL -92 703 19 1741 163 36 27 chr12 105934369 105934670 -37851785 + AluJb SINE Alu 1 304 -8 648 236 67 44 chr12 105934780 105935005 -37851450 - MIR SINE MIR -13 249 20 1584 145 33 0 chr12 105935632 105935908 -37850547 - L1MC1 LINE L1 -12 6321 6037 850 277 127 27 chr12 105936139 105936675 -37849780 - MLT1L LTR MaLR 0 615 1 338 301 27 89 chr12 105936677 105937046 -37849409 + L2 LINE L2 2230 2575 -739 21 36 0 0 chr12 105937189 105937217 -37849238 + AT_rich Low_complexity Low_complexity 1 28 0 462 280 150 52 chr12 105938116 105938423 -37848032 + L1ME LINE L1 4995 5331 -815 581 302 96 2 chr12 105938458 105938823 -37847632 + L1ME LINE L1 5397 5800 -362 1371 253 110 12 chr12 105939690 105940117 -37846338 - MLT1J LTR MaLR -37 474 6 22 0 0 0 chr12 105940282 105940304 -37846151 + AT_rich Low_complexity Low_complexity 1 22 0 455 315 87 0 chr12 105941158 105941307 -37845148 - L2 LINE L2 0 3272 3111 625 332 61 9 chr12 105941759 105941988 -37844467 - MIR SINE MIR -21 241 1 23 33 0 0 chr12 105942019 105942049 -37844406 + AT_rich Low_complexity Low_complexity 1 30 0 185 278 148 37 chr12 105942717 105942825 -37843630 - L2 LINE L2 -1 3312 3193 238 322 141 35 chr12 105943143 105943342 -37843113 + MIR SINE MIR 9 228 -34 2527 37 0 0 chr12 105943412 105943706 -37842749 + AluY SINE Alu 1 294 -17 294 264 170 9 chr12 105943789 105943895 -37842560 + L2 LINE L2 3191 3313 0 22 56 0 0 chr12 105944474 105944510 -37841945 + AT_rich Low_complexity Low_complexity 1 36 0 533 260 58 24 chr12 105945853 105946061 -37840394 - MER112 DNA MER1_type -45 215 1 775 197 0 0 chr12 105946177 105946314 -37840141 + FRAM SINE Alu 26 162 -14 416 316 53 13 chr12 105946498 105946650 -37839805 - MIR SINE MIR -13 249 92 549 322 71 44 chr12 105946707 105947002 -37839453 - L3b LINE CR1 -136 1447 1145 234 256 60 45 chr12 105947738 105947937 -37838518 - L1ME4a LINE L1 -161 5960 5759 1267 209 13 0 chr12 105947955 105948194 -37838261 + MIR SINE MIR 18 259 -3 1899 135 7 28 chr12 105948461 105948750 -37837705 - AluSx SINE Alu -17 295 13 309 256 128 61 chr12 105948798 105948978 -37837477 - L1ME4a LINE L1 -2104 5704 5513 420 162 86 51 chr12 105948980 105949065 -37837390 - L1ME4a LINE L1 -2337 5471 5379 2046 121 17 10 chr12 105949065 105949362 -37837093 + AluSx SINE Alu 1 299 -13 420 162 86 51 chr12 105949362 105949393 -37837062 - L1ME4a LINE L1 -2429 5379 5351 307 260 7 27 chr12 105949409 105949559 -37836896 - L1ME4a LINE L1 -2396 5412 5266 246 229 9 182 chr12 105949572 105949786 -37836669 - L2 LINE L2 -1 3312 3136 474 219 26 9 chr12 105950715 105950829 -37835626 - MER45A DNA AcHobo -1 177 62 395 277 76 56 chr12 105951055 105951304 -37835151 + MER112 DNA MER1_type 1 254 -6 977 221 69 71 chr12 105951449 105951859 -37834596 + L1ME4a LINE L1 5540 5949 -172 2065 156 0 0 chr12 105951859 105952154 -37834301 + AluSx SINE Alu 1 295 -17 977 221 69 71 chr12 105952154 105952217 -37834238 + L1ME4a LINE L1 5949 6011 -110 2016 167 31 16 chr12 105952217 105952601 -37833854 - MLT1B LTR MaLR 0 390 1 977 221 69 71 chr12 105952601 105952691 -37833764 + L1ME4a LINE L1 6011 6103 -18 21 0 0 0 chr12 105952704 105952725 -37833730 + AT_rich Low_complexity Low_complexity 1 21 0 1610 145 52 28 chr12 105953049 105953166 -37833289 + AluJo SINE Alu 7 120 -192 2238 92 13 29 chr12 105953166 105953481 -37832974 + AluSg SINE Alu 1 310 0 1610 145 52 28 chr12 105953481 105953653 -37832802 + AluJo SINE Alu 120 303 -9 465 250 106 56 chr12 105953787 105953947 -37832508 - MIR SINE MIR -78 184 17 25 0 0 0 chr12 105954452 105954477 -37831978 + AT_rich Low_complexity Low_complexity 1 25 0 303 305 90 23 chr12 105954669 105954846 -37831609 + MIR SINE MIR 3 191 -71 1599 205 51 13 chr12 105954864 105955259 -37831196 - MER63D DNA MER1_type 0 1060 651 979 200 47 28 chr12 105955262 105955477 -37830978 - MER20 DNA MER1_type 0 219 1 419 223 33 2 chr12 105955482 105955662 -37830793 + MER58 DNA MER1_type 2 2419 -1 * 1610 201 138 57 chr12 105955662 105956265 -37830190 - MER63D DNA MER1_type -408 653 1 585 330 50 52 chr12 105956265 105956750 -37829705 + L2 LINE L2 2818 3301 -12 1585 277 64 35 chr12 105957045 105957191 -37829264 - L2 LINE L2 -64 3249 3109 1942 152 7 3 chr12 105957191 105957494 -37828961 + AluSx SINE Alu 1 304 -8 1585 277 64 35 chr12 105957494 105958103 -37828352 - L2 LINE L2 -204 3109 2472 1039 234 44 28 chr12 105958260 105958508 -37827947 - MIR SINE MIR 0 262 11 281 26 0 26 chr12 105958894 105958933 -37827522 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 272 39 68 chr12 105958978 105959081 -37827374 - L2 LINE L2 0 3272 3173 208 258 0 61 chr12 105959493 105959559 -37826896 + L2 LINE L2 3210 3271 -1 667 227 68 0 chr12 105959569 105959732 -37826723 - MIR SINE MIR 0 262 89 687 217 6 0 chr12 105961424 105961581 -37824874 + L1MA10 LINE L1 6169 6326 -8 321 26 0 0 chr12 105961581 105961619 -37824836 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 546 316 24 19 chr12 105962126 105962183 -37824272 - MIR SINE MIR -44 218 163 2347 93 7 0 chr12 105962183 105962493 -37823962 - AluSx SINE Alu 0 312 1 546 316 24 19 chr12 105962493 105962647 -37823808 - MIR SINE MIR -99 163 6 858 220 0 0 chr12 105963200 105963350 -37823105 + FRAM SINE Alu 1 150 -16 50 31 0 0 chr12 105963793 105963857 -37822598 + AT_rich Low_complexity Low_complexity 1 64 0 1463 171 0 42 chr12 105964416 105964726 -37821729 + L1MC1 LINE L1 6017 6313 -20 653 296 121 9 chr12 105965116 105965578 -37820877 - L1MC/D LINE L1 -2030 5778 5265 311 277 129 26 chr12 105965763 105965918 -37820537 - L1MC/D LINE L1 -1094 5052 4882 186 274 40 81 chr12 105965978 105966102 -37820353 + L2 LINE L2 2941 3059 -213 971 276 144 11 chr12 105966102 105966616 -37819839 + L2 LINE L2 2722 3310 -3 739 256 86 71 chr12 105967146 105967681 -37818774 - MLT1H LTR MaLR 0 549 7 1910 138 3 38 chr12 105967951 105968093 -37818362 + AluJb SINE Alu 1 146 -166 2345 61 4 0 chr12 105968093 105968412 -37818043 + AluY SINE Alu 1 320 0 1910 138 3 38 chr12 105968412 105968586 -37817869 + AluJb SINE Alu 146 307 -5 224 276 0 0 chr12 105968876 105968934 -37817521 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 289 294 176 34 chr12 105968934 105969053 -37817402 - L2 LINE L2 0 3272 3137 408 208 0 0 chr12 105969167 105969244 -37817211 - MER96 DNA MER1_type? 0 175 99 2250 122 3 0 chr12 105969381 105969685 -37816770 - AluSx SINE Alu -7 305 1 47 19 0 0 chr12 105969802 105969856 -37816599 + AT_rich Low_complexity Low_complexity 1 54 0 2464 101 0 0 chr12 105970161 105970468 -37815987 + AluSx SINE Alu 1 307 -5 497 242 172 40 chr12 105971644 105971842 -37814613 - MER58A DNA MER1_type 0 224 1 186 43 0 0 chr12 105971978 105972001 -37814454 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2247 87 10 3 chr12 105972005 105972293 -37814162 - AluSx SINE Alu -22 290 1 346 215 74 40 chr12 105972338 105972487 -37813968 - L1ME LINE L1 -344 5818 5665 441 332 84 23 chr12 105973415 105973725 -37812730 + L1MC/D LINE L1 5254 5582 -2226 22 70 0 0 chr12 105973769 105973812 -37812643 + AT_rich Low_complexity Low_complexity 1 43 0 2235 108 3 49 chr12 105974046 105974371 -37812084 - AluSx SINE Alu -2 310 1 2103 142 10 0 chr12 105974456 105974759 -37811696 - AluSx SINE Alu -6 306 1 1299 233 47 26 chr12 105974885 105975391 -37811064 + Charlie2 DNA MER1_type 2318 2834 -28 1542 198 33 18 chr12 105975767 105976100 -37810355 - MER58B DNA MER1_type 0 341 4 206 179 0 0 chr12 105976618 105976657 -37809798 - MIR SINE MIR -6 256 218 381 275 27 67 chr12 105976887 105977036 -37809419 + L3b LINE CR1 1320 1462 -121 281 192 20 40 chr12 105977086 105977185 -37809270 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 1810 161 17 17 chr12 105977262 105977554 -37808901 - AluJb SINE Alu -20 292 1 263 275 81 79 chr12 105978235 105978619 -37807836 + L2 LINE L2 1608 3313 0 253 298 76 23 chr12 105980008 105980139 -37806316 - MIR3 SINE MIR -17 191 54 2152 123 10 3 chr12 105981910 105982210 -37804245 + AluSc SINE Alu 1 302 -7 381 312 104 62 chr12 105982590 105982927 -37803528 - L2 LINE L2 -45 3268 2918 183 293 0 0 chr12 105982978 105983019 -37803436 + MIR SINE MIR 65 105 -103 391 287 112 26 chr12 105983424 105983772 -37802683 - LTR16C LTR ERVL -18 473 96 287 247 82 31 chr12 105984531 105984628 -37801827 + MIR SINE MIR 110 211 -51 1872 96 93 21 chr12 105984816 105985107 -37801348 + AluSx SINE Alu 1 312 0 846 145 0 0 chr12 105985382 105985513 -37800942 - FRAM SINE Alu -4 172 42 324 290 48 16 chr12 105986309 105986433 -37800022 + MIR SINE MIR 40 167 -95 * 448 310 32 13 chr12 105986421 105986579 -37799876 - MIR SINE MIR -34 228 68 736 188 0 0 chr12 105986853 105986981 -37799474 + MER3 DNA MER1_type 1 128 -81 198 71 0 0 chr12 105986984 105987012 -37799443 + (TTTAA)n Simple_repeat Simple_repeat 1 28 0 1807 145 63 41 chr12 105987018 105987383 -37799072 + THE1C LTR MaLR 1 373 -2 271 191 0 0 chr12 105987383 105987430 -37799025 - MER3 DNA MER1_type -119 90 44 408 311 32 42 chr12 105987923 105988113 -37798342 + MIR SINE MIR 25 212 -50 347 264 7 64 chr12 105988187 105988327 -37798128 - MIR SINE MIR -50 212 81 512 295 6 29 chr12 105988543 105988716 -37797739 - MIR SINE MIR -35 227 59 1467 148 59 102 chr12 105988716 105989089 -37797366 - MLT1B LTR MaLR 0 390 34 289 200 0 0 chr12 105989094 105989149 -37797306 + Tigger5 DNA MER2_type 8 62 -2261 480 145 0 0 chr12 105989153 105989236 -37797219 + Tigger5 DNA MER2_type 2077 2159 -164 1354 117 14 22 chr12 105989257 105989480 -37796975 - THE1C LTR MaLR -154 221 1 573 289 30 4 chr12 105990294 105990526 -37795929 - MER112 DNA MER1_type -6 254 17 21 0 0 0 chr12 105990697 105990718 -37795737 + AT_rich Low_complexity Low_complexity 1 21 0 339 339 16 16 chr12 105990906 105991030 -37795425 - L2 LINE L2 0 3272 3149 369 359 71 5 chr12 105991063 105991275 -37795180 - MIR SINE MIR -33 229 4 183 308 34 103 chr12 105991278 105991424 -37795031 - L2 LINE L2 -111 3161 3026 235 245 41 0 chr12 105991593 105991642 -37794813 - L2 LINE L2 -8 3264 3214 728 219 112 0 chr12 105991784 105991971 -37794484 - MER3 DNA MER1_type 0 209 2 262 300 12 25 chr12 105992380 105992460 -37793995 + L2 LINE L2 3169 3247 -25 369 0 0 0 chr12 105992462 105992503 -37793952 + (CA)n Simple_repeat Simple_repeat 2 42 0 2145 114 3 10 chr12 105992968 105993267 -37793188 - AluSx SINE Alu -15 297 1 216 263 140 0 chr12 105993546 105993603 -37792852 + MIR SINE MIR 56 120 -142 2363 97 0 6 chr12 105993911 105994222 -37792233 - AluSc SINE Alu 0 309 1 254 320 29 74 chr12 105994412 105994587 -37791868 - MIR3 SINE MIR -1 207 41 215 265 143 69 chr12 105994619 105994808 -37791647 - L2 LINE L2 -220 3052 2850 544 271 148 5 chr12 105994953 105995163 -37791292 + MIR SINE MIR 13 252 -10 1201 217 46 7 chr12 105995244 105995548 -37790907 + MER46C DNA MER2_type 23 338 0 325 381 25 19 chr12 105995548 105995708 -37790747 - MIR SINE MIR -64 198 38 771 269 40 9 chr12 105995952 105996175 -37790280 - MIR SINE MIR -13 249 20 234 0 0 0 chr12 105996375 105996401 -37790054 + (CA)n Simple_repeat Simple_repeat 1 26 0 649 297 138 24 chr12 105996427 105997013 -37789442 - L1MC4a LINE L1 -1902 5906 5254 252 0 0 0 chr12 105997067 105997095 -37789360 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr12 105998000 105998023 -37788432 + AT_rich Low_complexity Low_complexity 1 23 0 25 40 0 20 chr12 105998077 105998104 -37788351 + AT_rich Low_complexity Low_complexity 1 28 -21 2379 81 0 0 chr12 105998104 105998388 -37788067 + AluSq SINE Alu 6 289 -24 25 40 0 20 chr12 105998388 105998410 -37788045 + AT_rich Low_complexity Low_complexity 28 49 0 1962 141 0 0 chr12 105998415 105998698 -37787757 + AluJb SINE Alu 6 288 -24 22 35 0 0 chr12 105998781 105998810 -37787645 + AT_rich Low_complexity Low_complexity 1 29 0 2301 81 3 3 chr12 105998819 105999114 -37787341 + AluY SINE Alu 1 295 -16 294 291 0 12 chr12 105999170 105999256 -37787199 - L2 LINE L2 0 3313 3229 290 238 50 50 chr12 105999626 105999706 -37786749 + L2 LINE L2 3187 3266 -6 2021 128 0 4 chr12 105999971 106000252 -37786203 + AluSx SINE Alu 1 280 -32 636 14 0 0 chr12 106000258 106000331 -37786124 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 231 331 8 24 chr12 106000366 106000490 -37785965 + L3 LINE CR1 799 920 -657 638 327 33 44 chr12 106000492 106000764 -37785691 + L3 LINE CR1 1308 1576 -1 1188 156 42 9 chr12 106000890 106001102 -37785353 - MER20 DNA MER1_type 0 219 1 2372 98 0 3 chr12 106001625 106001931 -37784524 - AluSx SINE Alu -7 305 1 288 218 35 35 chr12 106002085 106002172 -37784283 + MIR SINE MIR 176 262 0 677 207 152 0 chr12 106002334 106002498 -37783957 + MER5A DNA MER1_type 1 189 0 2443 58 10 0 chr12 106002831 106003125 -37783330 - AluY SINE Alu -14 297 1 202 293 85 0 chr12 106003147 106003229 -37783226 - MIR SINE MIR -49 213 125 5098 136 29 0 chr12 106003363 106004241 -37782214 - L1MA6 LINE L1 -4 6296 5394 419 321 51 0 chr12 106004245 106004382 -37782073 - MIR SINE MIR -113 149 6 237 309 67 39 chr12 106004657 106004835 -37781620 - L2 LINE L2 -1143 2171 1989 554 251 76 12 chr12 106005019 106005190 -37781265 - MER58A DNA MER1_type 0 224 43 2199 107 17 0 chr12 106005248 106005547 -37780908 - AluSx SINE Alu -8 304 1 239 296 80 11 chr12 106006683 106006771 -37779684 + MIR SINE MIR 22 115 -147 203 235 222 0 chr12 106007381 106007462 -37778993 + MIR SINE MIR 87 185 -77 391 280 83 0 chr12 106008416 106008548 -37777907 + MIR SINE MIR 11 153 -109 726 164 18 0 chr12 106008551 106008716 -37777739 + (ATG)n Simple_repeat Simple_repeat 2 169 0 414 231 11 11 chr12 106008726 106008817 -37777638 - MIR SINE MIR -16 246 156 323 294 11 0 chr12 106008823 106008915 -37777540 + MIR SINE MIR 170 262 0 181 232 29 72 chr12 106008922 106008991 -37777464 + MIR SINE MIR 164 229 -33 5376 133 8 13 chr12 106009010 106010070 -37776385 - L1PB3 LINE L1 0 6154 5101 384 313 39 16 chr12 106010227 106010355 -37776100 - L2 LINE L2 0 3313 3183 231 304 89 0 chr12 106011085 106011197 -37775258 - HAL1 LINE L1 -6 2501 2380 2126 207 40 69 chr12 106012058 106012839 -37773616 - L1M4 LINE L1 -2458 3688 2931 476 277 25 75 chr12 106013672 106013709 -37772746 + MIR SINE MIR 1 38 -224 1900 143 7 20 chr12 106013709 106014010 -37772445 + AluJo SINE Alu 5 301 -11 476 277 25 75 chr12 106014010 106014131 -37772324 + MIR SINE MIR 38 151 -111 1440 43 0 0 chr12 106014131 106014315 -37772140 - L1PA4 LINE L1 -176 5979 5796 407 259 28 0 chr12 106014343 106014451 -37772004 + MIR SINE MIR 137 247 -15 709 171 0 0 chr12 106014727 106014844 -37771611 + AluSg/x SINE Alu 184 300 -12 294 307 133 44 chr12 106015744 106016037 -37770418 + L2 LINE L2 2564 2882 -432 323 226 85 57 chr12 106016323 106016429 -37770026 - MER91B DNA MER1_type -73 117 9 899 265 40 8 chr12 106016658 106016907 -37769548 + MIR SINE MIR 6 262 0 249 286 0 0 chr12 106017186 106017242 -37769213 - MER91 DNA MER1_type -2 188 133 2161 107 7 3 chr12 106017633 106017932 -37768523 + AluSx SINE Alu 1 300 -12 237 322 60 40 chr12 106018500 106018649 -37767806 + L2 LINE L2 3153 3304 -9 2746 3 10 0 chr12 106020350 106020652 -37765803 - AluYb8 SINE Alu -13 305 1 535 156 73 0 chr12 106021086 106021182 -37765273 - MIR SINE MIR -74 188 86 755 182 198 11 chr12 106022345 106022532 -37763923 - MER58A DNA MER1_type -1 223 2 283 292 92 77 chr12 106024018 106024164 -37762291 - L2 LINE L2 -183 3089 2947 2209 128 13 0 chr12 106024164 106024469 -37761986 - AluSx SINE Alu -3 309 1 283 292 92 77 chr12 106024469 106024847 -37761608 - L2 LINE L2 -325 2947 2553 206 309 62 0 chr12 106025573 106025654 -37760801 + L2 LINE L2 3186 3271 -1 305 212 88 35 chr12 106025814 106025927 -37760528 - L2 LINE L2 -2 3311 3193 985 254 173 19 chr12 106026096 106026568 -37759887 - L2 LINE L2 -2 3311 2761 231 325 79 24 chr12 106027307 106027433 -37759022 + L2 LINE L2 3179 3311 -2 592 206 139 123 chr12 106027684 106027730 -37758725 - MIR SINE MIR -2 260 216 1919 180 3 0 chr12 106027730 106028041 -37758414 - AluSx SINE Alu 0 312 1 2059 147 20 7 chr12 106028050 106028356 -37758099 - AluSx SINE Alu -2 310 1 592 206 139 123 chr12 106028356 106028523 -37757932 - MIR SINE MIR -53 209 30 2122 136 0 3 chr12 106028523 106028818 -37757637 + AluSx SINE Alu 1 294 -18 592 206 139 123 chr12 106028818 106028845 -37757610 - MIR SINE MIR -232 30 5 284 343 107 11 chr12 106028912 106029090 -37757365 + L3b LINE CR1 1384 1578 -5 263 345 147 15 chr12 106029363 106029827 -37756628 - L2 LINE L2 -53 3219 2698 261 0 0 0 chr12 106030019 106030048 -37756407 + (TG)n Simple_repeat Simple_repeat 2 30 0 2530 66 0 0 chr12 106030430 106030734 -37755721 + AluY SINE Alu 1 304 -7 219 314 129 0 chr12 106030867 106030937 -37755518 + MIR SINE MIR 12 90 -172 318 313 26 0 chr12 106031039 106031154 -37755301 + L2 LINE L2 3195 3312 -1 2042 157 0 6 chr12 106031817 106032129 -37754326 + AluJo SINE Alu 1 310 -2 878 281 101 37 chr12 106032232 106032666 -37753789 - LTR16B LTR ERVL 0 464 3 816 289 127 70 chr12 106032721 106032874 -37753581 + L2 LINE L2 785 928 -2386 2185 106 0 3 chr12 106032874 106033184 -37753271 + AluSg SINE Alu 2 310 0 816 289 127 70 chr12 106033184 106033603 -37752852 + L2 LINE L2 928 1391 -1923 2317 95 0 7 chr12 106034073 106034377 -37752078 + AluY SINE Alu 1 302 -9 272 311 146 0 chr12 106034647 106034750 -37751705 - L2 LINE L2 -9 3304 3187 623 239 66 86 chr12 106034797 106035044 -37751411 - MLT1J LTR MaLR -6 505 267 2031 138 0 0 chr12 106035044 106035348 -37751107 + AluY SINE Alu 1 304 -7 623 239 66 86 chr12 106035348 106035494 -37750961 - MLT1J LTR MaLR -244 267 120 2126 136 0 3 chr12 106036345 106036653 -37749802 - AluSq SINE Alu -6 307 1 414 289 44 49 chr12 106036848 106037052 -37749403 - MIR SINE MIR -40 222 20 1681 172 45 0 chr12 106037731 106038045 -37748410 + MER2 DNA MER2_type 2 329 -16 270 240 157 66 chr12 106038057 106038178 -37748277 + L2 LINE L2 3137 3268 -4 30 0 0 0 chr12 106038280 106038310 -37748145 + AT_rich Low_complexity Low_complexity 1 30 0 252 351 0 0 chr12 106038544 106038621 -37747834 - L2 LINE L2 -8 3264 3188 1680 194 14 7 chr12 106038628 106038921 -37747534 + AluJo SINE Alu 1 295 -17 363 320 103 87 chr12 106038921 106038991 -37747464 - L2 LINE L2 -20 3252 3185 2307 85 0 7 chr12 106038991 106039285 -37747170 - AluSc SINE Alu -17 292 1 363 320 103 87 chr12 106039285 106039467 -37746988 - L2 LINE L2 -87 3185 2996 825 311 86 7 chr12 106039553 106039962 -37746493 - MLT1L LTR MaLR -7 608 168 288 0 0 0 chr12 106040380 106040412 -37746043 + (CA)n Simple_repeat Simple_repeat 2 33 0 389 362 63 34 chr12 106041148 106041416 -37745039 + L3 LINE CR1 11 286 -1291 523 279 131 26 chr12 106041595 106041824 -37744631 - MIR SINE MIR -8 254 2 21 36 0 0 chr12 106042091 106042119 -37744336 + AT_rich Low_complexity Low_complexity 1 28 0 2453 90 3 0 chr12 106042173 106042483 -37743972 + AluSp SINE Alu 1 311 -2 341 239 25 101 chr12 106042688 106042847 -37743608 + MIR SINE MIR 60 206 -56 21 0 0 0 chr12 106043000 106043021 -37743434 + AT_rich Low_complexity Low_complexity 1 21 0 1341 158 61 36 chr12 106043023 106043068 -37743387 - L1PB4 LINE L1 -3 6153 6111 2566 156 36 0 chr12 106043068 106043479 -37742976 - MSTB LTR MaLR 0 426 1 1341 158 61 36 chr12 106043479 106043712 -37742743 - L1PB4 LINE L1 -45 6111 5868 207 0 0 0 chr12 106044028 106044051 -37742404 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1902 105 81 48 chr12 106044068 106044363 -37742092 + AluSg SINE Alu 3 307 -3 1836 168 4 4 chr12 106044363 106044643 -37741812 - AluJb SINE Alu -30 282 3 295 327 109 13 chr12 106044648 106044804 -37741651 - L2 LINE L2 -257 3015 2845 438 296 250 0 chr12 106044831 106045003 -37741452 + MIR SINE MIR 28 242 -20 2632 171 15 26 chr12 106045180 106045789 -37740666 + pTR5 LTR ERV1 743 1344 -1094 3997 144 25 88 chr12 106045805 106046682 -37739773 + LTR12 LTR ERV1 5 826 0 2437 61 0 6 chr12 106047096 106047408 -37739047 + AluY SINE Alu 1 310 -1 477 229 69 0 chr12 106048014 106048158 -37738297 - L1ME4a LINE L1 -1 6120 5967 709 281 128 18 chr12 106048170 106048451 -37738004 - L2 LINE L2 0 3313 3002 269 241 0 0 chr12 106048561 106048640 -37737815 - L1ME4a LINE L1 -319 5802 5724 297 319 2 0 chr12 106048873 106048978 -37737477 + L1ME3 LINE L1 5572 5677 -485 320 235 96 30 chr12 106048983 106049149 -37737306 + L1ME3 LINE L1 5978 6154 -8 1803 128 0 40 chr12 106050655 106050952 -37735503 + AluJb SINE Alu 19 303 -9 348 233 22 22 chr12 106051538 106051628 -37734827 + MER21B LTR ERV1 1 90 -773 1156 172 19 5 chr12 106052016 106052225 -37734230 + MER20 DNA MER1_type 8 219 0 1904 135 96 3 chr12 106052238 106052572 -37733883 - MLT1A1 LTR MaLR 0 365 1 751 311 16 8 chr12 106052926 106053172 -37733283 + MLT1K LTR MaLR 26 265 -350 550 267 20 72 chr12 106053278 106053656 -37732799 + MLT1H LTR MaLR 68 384 -25 816 261 126 51 chr12 106053684 106054074 -37732381 + LTR33A LTR ERVL 3 421 -102 528 320 89 23 chr12 106054145 106054404 -37732051 + MLT1K LTR MaLR 269 544 -44 1464 223 87 28 chr12 106054633 106055069 -37731386 - MLT1C LTR MaLR 0 467 6 537 30 0 0 chr12 106055896 106055963 -37730492 + (CA)n Simple_repeat Simple_repeat 2 68 0 2033 90 14 4 chr12 106056012 106056322 -37730133 + AluY SINE Alu 1 313 0 23 0 0 0 chr12 106056322 106056345 -37730110 + AT_rich Low_complexity Low_complexity 1 23 0 2090 180 22 0 chr12 106056979 106057380 -37729075 - LOR1b LTR ERV1 0 461 52 273 247 301 0 chr12 106057479 106057572 -37728883 + L2 LINE L2 3185 3305 -8 245 281 73 56 chr12 106057560 106057738 -37728717 + L2 LINE L2 2218 2398 -916 * 253 317 115 50 chr12 106057873 106058291 -37728164 + L2 LINE L2 2647 3099 -173 233 310 8 47 chr12 106058416 106058512 -37727943 - MIR3 SINE MIR -41 167 76 2308 109 0 0 chr12 106058512 106058824 -37727631 + AluJb SINE Alu 1 312 0 233 310 8 47 chr12 106058824 106058856 -37727599 - MIR3 SINE MIR -132 76 44 40 0 0 0 chr12 106058872 106058912 -37727543 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr12 106059034 106059058 -37727397 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr12 106059666 106059689 -37726766 + (CGG)n Simple_repeat Simple_repeat 2 24 0 624 246 11 56 chr12 106061001 106061180 -37725275 + MIR SINE MIR 63 233 -29 266 224 40 53 chr12 106061273 106061349 -37725106 + MIR SINE MIR 166 240 -22 358 307 48 54 chr12 106061359 106061458 -37724997 - MIR SINE MIR -13 249 150 2301 70 7 3 chr12 106061458 106061759 -37724696 - AluSc SINE Alu -7 302 1 358 307 48 54 chr12 106061759 106061825 -37724630 - MIR SINE MIR -112 150 85 422 248 72 53 chr12 106063094 106063283 -37723172 - L1MC4a LINE L1 -216 5905 5724 576 270 178 53 chr12 106063728 106064269 -37722186 - L2 LINE L2 -200 3072 2459 24 0 0 0 chr12 106067921 106067945 -37718510 + AT_rich Low_complexity Low_complexity 1 24 0 2117 160 32 16 chr12 106068003 106068446 -37718009 - LTR7 LTR ERV1 0 450 1 829 227 80 39 chr12 106068667 106068953 -37717502 - MLT1D LTR MaLR 0 505 208 227 196 0 0 chr12 106068957 106069013 -37717442 - MLT1D LTR MaLR -270 235 180 846 86 16 0 chr12 106069025 106069153 -37717302 - MER41B LTR ERV1 -28 607 478 805 172 103 0 chr12 106069150 106069324 -37717131 - MLT1D LTR MaLR -313 192 1 * 282 116 0 0 chr12 106069473 106069516 -37716939 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1627 116 17 13 chr12 106069518 106069750 -37716705 - AluSc SINE Alu -76 233 1 624 273 107 8 chr12 106070319 106070561 -37715894 + L2 LINE L2 2055 2320 -994 2013 135 3 3 chr12 106070561 106070850 -37715605 - AluSc SINE Alu -18 291 3 2299 89 0 35 chr12 106070865 106071180 -37715275 - AluY SINE Alu -7 304 1 2200 95 0 0 chr12 106071261 106071535 -37714920 - AluSg SINE Alu -36 274 1 261 273 102 74 chr12 106071591 106071847 -37714608 + L2 LINE L2 2399 2661 -653 249 284 12 49 chr12 106072019 106072100 -37714355 + L2 LINE L2 2695 2772 -542 7307 208 5 14 chr12 106072110 106073752 -37712703 + L1PB1 LINE L1 2540 4166 -1980 2418 67 0 0 chr12 106073752 106074059 -37712396 + AluY SINE Alu 1 307 0 7307 208 5 14 chr12 106074059 106074170 -37712285 + L1PB1 LINE L1 4166 4277 -1869 4333 60 15 16 chr12 106074171 106075198 -37711257 - MER11A LTR ERVK 0 1266 1 5557 164 15 16 chr12 106075202 106077073 -37709382 + L1PB1 LINE L1 4279 6150 -1 330 282 63 35 chr12 106077090 106077232 -37709223 + L2 LINE L2 3150 3295 -18 551 282 111 6 chr12 106077614 106077795 -37708660 - MIR SINE MIR -12 250 51 28 29 0 0 chr12 106080048 106080083 -37706372 + AT_rich Low_complexity Low_complexity 1 35 0 269 57 0 0 chr12 106081130 106081165 -37705290 + U2 snRNA snRNA 1 35 -153 405 301 71 15 chr12 106081647 106081843 -37704612 + MIR SINE MIR 52 258 -4 228 234 21 0 chr12 106081909 106081956 -37704499 + CT-rich Low_complexity Low_complexity 4 51 0 201 259 0 0 chr12 106083568 106083626 -37702829 + T-rich Low_complexity Low_complexity 2 59 0 23 0 0 0 chr12 106083944 106083967 -37702488 + AT_rich Low_complexity Low_complexity 1 23 0 2199 230 110 0 chr12 106084008 106084608 -37701847 - L1MC4 LINE L1 -139 7903 7238 724 189 83 0 chr12 106084611 106084780 -37701675 - L1MC4 LINE L1 -964 7078 6896 349 188 94 12 chr12 106084791 106084876 -37701579 - L1MC4a LINE L1 -1243 6565 6474 21 0 0 0 chr12 106085332 106085353 -37701102 + AT_rich Low_complexity Low_complexity 1 21 0 315 174 72 0 chr12 106085387 106085456 -37700999 - MER58 DNA MER1_type -31 2389 2316 * 391 206 54 0 chr12 106085453 106085545 -37700910 - MER58 DNA MER1_type -2320 100 4 231 36 0 0 chr12 106085630 106085658 -37700797 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 273 303 230 13 chr12 106085658 106085810 -37700645 - MIR SINE MIR -7 255 71 1720 162 4 18 chr12 106085921 106086199 -37700256 + AluJo SINE Alu 1 274 -38 396 311 0 37 chr12 106086567 106086702 -37699753 - L2 LINE L2 -6 3307 3178 237 272 57 114 chr12 106087908 106088066 -37698389 + MIR SINE MIR 87 235 -27 248 259 136 0 chr12 106088080 106088161 -37698294 + MIR SINE MIR 141 232 -30 22 0 0 0 chr12 106088434 106088456 -37697999 + AT_rich Low_complexity Low_complexity 1 22 0 17376 145 64 18 chr12 106088488 106092980 -37693475 - L1MA2 LINE L1 -7 7716 3430 278 114 0 0 chr12 106092980 106093024 -37693431 - U5 snRNA snRNA -72 44 1 17376 145 64 18 chr12 106093024 106094511 -37691944 - L1MA2 LINE L1 -4293 3430 2012 2120 75 43 7 chr12 106094511 106094792 -37691663 - AluY SINE Alu -20 291 1 17376 145 64 18 chr12 106094792 106096108 -37690347 - L1MA2 LINE L1 -5711 2012 16 316 212 18 44 chr12 106096184 106096297 -37690158 + L1ME LINE L1 5719 5828 -293 1642 173 24 14 chr12 106096966 106097255 -37689200 - AluJo SINE Alu -10 302 11 2220 148 15 0 chr12 106097484 106097816 -37688639 - MER1B DNA MER1_type 0 337 1 641 223 34 0 chr12 106098818 106098966 -37687489 - MER97c DNA MER1_type? -911 179 27 2384 89 0 0 chr12 106099573 106099876 -37686579 - AluY SINE Alu -8 303 1 31 26 0 0 chr12 106100104 106100142 -37686313 + AT_rich Low_complexity Low_complexity 1 38 0 2098 114 24 0 chr12 106100164 106100454 -37686001 + AluSx SINE Alu 1 297 -15 6018 199 50 20 chr12 106100516 106102403 -37684052 - L1MB7 LINE L1 -19 6165 4183 1703 152 30 79 chr12 106102403 106102731 -37683724 - AluJo SINE Alu 0 312 1 6018 199 50 20 chr12 106102731 106103351 -37683104 - L1MB7 LINE L1 -2001 4183 3583 231 314 144 31 chr12 106104944 106105173 -37681282 - L2 LINE L2 -696 2618 2364 23 0 0 0 chr12 106107407 106107430 -37679025 + AT_rich Low_complexity Low_complexity 1 23 0 315 146 0 0 chr12 106107847 106107902 -37678553 + (GA)n Simple_repeat Simple_repeat 1 55 0 483 227 158 20 chr12 106107902 106108062 -37678393 + MIR SINE MIR 6 183 -79 342 67 0 0 chr12 106108732 106108777 -37677678 + (A)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr12 106109004 106109037 -37677418 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 106109371 106109394 -37677061 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 106111677 106111701 -37674754 + AT_rich Low_complexity Low_complexity 1 24 0 2196 105 3 0 chr12 106112816 106113101 -37673354 + AluSg SINE Alu 25 310 0 2194 110 0 26 chr12 106113230 106113559 -37672896 - AluSq SINE Alu 0 313 2 2137 103 3 3 chr12 106114885 106115187 -37671268 - AluSx SINE Alu 0 302 1 216 192 0 39 chr12 106115508 106115560 -37670895 + MIR SINE MIR 212 261 -1 589 238 25 0 chr12 106115916 106116038 -37670417 + L2 LINE L2 3189 3313 0 259 186 23 0 chr12 106116039 106116082 -37670373 - MIR SINE MIR -57 151 108 180 176 0 0 chr12 106116440 106116474 -37669981 + L2 LINE L2 3239 3272 0 21 36 0 0 chr12 106116590 106116618 -37669837 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 106116836 106116857 -37669598 + AT_rich Low_complexity Low_complexity 1 21 0 250 372 173 0 chr12 106117142 106117368 -37669087 + L2 LINE L2 2966 3230 -42 23 33 0 0 chr12 106117687 106117717 -37668738 + AT_rich Low_complexity Low_complexity 1 30 0 218 200 0 176 chr12 106118041 106118126 -37668329 - L2 LINE L2 0 3272 3203 1237 184 10 49 chr12 106119087 106119486 -37666969 - LTR2B LTR ERV1 0 490 1 14988 117 3 7 chr12 106119486 106122109 -37664346 - Harlequin LTR ERV1 0 6896 4721 5710 32 0 1 chr12 106122110 106122787 -37663668 - L1PA4 LINE L1 -4 6151 5476 41924 43 1 0 chr12 106122806 106128950 -37657505 - L1PA4 LINE L1 -3 6152 1 28858 178 10 10 chr12 106128950 106134171 -37652284 - HERVE LTR ERV1 -2593 5220 1 1579 189 115 24 chr12 106134171 106134590 -37651865 - LTR2B LTR ERV1 0 490 34 592 241 29 0 chr12 106135972 106136109 -37650346 - MIR SINE MIR -12 250 110 535 221 67 0 chr12 106136487 106136650 -37649805 - MLT1I LTR MaLR 0 409 245 429 175 50 0 chr12 106137240 106137320 -37649135 - MER91C DNA MER1_type -24 116 33 306 233 41 70 chr12 106137596 106137768 -37648687 - MLT1K LTR MaLR -3 585 419 255 241 81 11 chr12 106138011 106138098 -37648357 - MIR SINE MIR -156 106 14 23 0 0 0 chr12 106139215 106139238 -37647217 + AT_rich Low_complexity Low_complexity 1 23 0 341 259 147 0 chr12 106139261 106139377 -37647078 - L2 LINE L2 -1 3312 3180 187 356 74 37 chr12 106139519 106139654 -37646801 - L2 LINE L2 -253 3060 2921 202 278 26 43 chr12 106139694 106139809 -37646646 - L2 LINE L2 -485 2829 2717 2212 111 3 0 chr12 106140085 106140391 -37646064 - AluY SINE Alu -4 307 1 359 270 17 52 chr12 106140682 106140797 -37645658 + L2 LINE L2 3190 3300 -13 258 32 0 0 chr12 106140797 106140828 -37645627 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 308 310 43 17 chr12 106140898 106141014 -37645441 - L2 LINE L2 0 3272 3154 853 304 59 17 chr12 106141158 106141618 -37644837 + L1ME3A LINE L1 5474 5952 -218 746 177 9 0 chr12 106141674 106141787 -37644668 - MER81 DNA DNA 0 114 1 213 94 0 0 chr12 106142203 106142235 -37644220 + (CA)n Simple_repeat Simple_repeat 2 33 0 427 305 97 34 chr12 106142352 106142559 -37643896 + MIR SINE MIR 12 232 -30 22 0 0 0 chr12 106142584 106142606 -37643849 + AT_rich Low_complexity Low_complexity 1 22 0 236 236 139 14 chr12 106143643 106143787 -37642668 - L1MEd LINE L1 -3936 2604 2443 410 278 106 35 chr12 106144263 106144687 -37641768 - L1MEd LINE L1 -908 1993 1358 363 288 58 29 chr12 106145363 106145502 -37640953 + MIR SINE MIR 117 259 -3 291 368 0 0 chr12 106145608 106145725 -37640730 - L2 LINE L2 -189 3083 2967 669 267 37 0 chr12 106146048 106146239 -37640216 + MIR SINE MIR 52 249 -13 259 254 33 49 chr12 106146243 106146365 -37640090 - L2 LINE L2 -820 2494 2375 453 278 38 23 chr12 106146937 106147070 -37639385 - MIR SINE MIR -108 154 20 474 130 76 11 chr12 106147684 106147776 -37638679 + MER4A LTR ERV1 1 98 -566 1851 120 157 82 chr12 106147776 106148152 -37638303 + MER4A LTR ERV1 261 664 0 2390 81 10 7 chr12 106148360 106148669 -37637786 + AluSg SINE Alu 1 310 0 2104 76 69 14 chr12 106148783 106149071 -37637384 + AluY SINE Alu 1 304 -7 200 397 112 0 chr12 106149766 106149882 -37636573 + L2 LINE L2 3142 3270 -2 1538 125 82 107 chr12 106150223 106150500 -37635955 - AluSx SINE Alu 0 424 157 2101 110 0 3 chr12 106150500 106150790 -37635665 - AluSx SINE Alu -23 289 1 1538 125 82 107 chr12 106150790 106150944 -37635511 - AluSx SINE Alu -267 157 1 240 35 0 0 chr12 106151276 106151305 -37635150 + (TG)n Simple_repeat Simple_repeat 2 30 0 1731 157 31 14 chr12 106151305 106151598 -37634857 - AluJb SINE Alu -14 298 1 390 292 39 81 chr12 106152149 106152457 -37633998 - L1M4 LINE L1 -1534 4612 4318 27 0 0 0 chr12 106152487 106152514 -37633941 + AT_rich Low_complexity Low_complexity 1 27 0 1915 70 30 94 chr12 106153157 106153483 -37632972 - AluSg SINE Alu 0 307 1 225 196 0 0 chr12 106153728 106153774 -37632681 + (TA)n Simple_repeat Simple_repeat 1 46 0 2088 121 17 3 chr12 106153810 106154108 -37632347 + AluSx SINE Alu 1 302 -10 1924 112 0 44 chr12 106154213 106154508 -37631947 + AluSx SINE Alu 31 312 0 26 50 0 0 chr12 106154510 106154550 -37631905 + AT_rich Low_complexity Low_complexity 1 40 0 1433 234 53 55 chr12 106155305 106155817 -37630638 - L1MC4 LINE L1 -1 8041 7531 248 181 74 63 chr12 106156354 106156516 -37629939 + MLT1K LTR MaLR 379 585 -3 238 282 48 19 chr12 106156620 106156723 -37629732 + MIR SINE MIR 149 254 -8 257 279 70 12 chr12 106159147 106159233 -37627222 + MIR SINE MIR 64 154 -108 182 308 0 56 chr12 106159851 106159958 -37626497 - L2 LINE L2 -237 3035 2935 443 48 16 0 chr12 106159965 106160027 -37626428 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 496 249 46 83 chr12 106160114 106160355 -37626100 + MIR SINE MIR 6 237 -25 2288 101 0 23 chr12 106160758 106161064 -37625391 + AluSx SINE Alu 1 299 -13 388 224 88 40 chr12 106161066 106161191 -37625264 + MIR SINE MIR 61 191 -71 191 147 29 0 chr12 106161713 106161747 -37624708 - L2 LINE L2 -12 3301 3267 480 178 115 19 chr12 106161840 106162005 -37624450 + MER69 DNA AcHobo 1 2525 -1 2782 100 19 3 chr12 106162188 106162557 -37623898 + THE1C LTR MaLR 1 375 0 546 241 19 0 chr12 106162836 106162944 -37623511 - MER81 DNA DNA 0 114 5 449 200 11 21 chr12 106163005 106163100 -37623355 + L2 LINE L2 2260 2353 -961 * 1097 260 80 11 chr12 106163099 106163461 -37622994 + L2 LINE L2 2926 3312 -1 2370 95 0 0 chr12 106163465 106163761 -37622694 - AluY SINE Alu -15 296 1 1647 251 44 77 chr12 106163767 106164656 -37621799 + L2 LINE L2 2456 3312 -1 30 27 0 0 chr12 106164791 106164828 -37621627 + AT_rich Low_complexity Low_complexity 1 37 0 1227 69 25 6 chr12 106165113 106165272 -37621183 + AluY SINE Alu 133 294 -17 1771 112 10 83 chr12 106165391 106165704 -37620751 + AluJo SINE Alu 1 290 -22 427 244 84 8 chr12 106165794 106165925 -37620530 - MIR SINE MIR -21 241 101 1203 226 85 65 chr12 106165926 106166280 -37620175 + LTR16C LTR ERVL 1 361 -130 309 383 9 0 chr12 106166327 106166434 -37620021 - MIR SINE MIR -152 110 3 595 324 31 4 chr12 106167222 106167488 -37618967 + L2 LINE L2 2782 3060 -253 276 309 0 0 chr12 106167538 106167606 -37618849 + L2 LINE L2 3241 3308 -5 26 50 0 0 chr12 106167780 106167820 -37618635 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr12 106168050 106168072 -37618383 + AT_rich Low_complexity Low_complexity 1 22 0 240 259 0 0 chr12 106168276 106168330 -37618125 - MIR SINE MIR -1 261 208 302 340 78 7 chr12 106168664 106168817 -37617638 + L2 LINE L2 2897 3060 -212 317 305 19 9 chr12 106168867 106168972 -37617483 + MLT1K LTR MaLR 1 106 -482 726 263 122 59 chr12 106168974 106169415 -37617040 + MLT1K LTR MaLR 5 473 -3 207 85 106 0 chr12 106169453 106169500 -37616955 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 304 303 79 0 chr12 106169538 106169627 -37616828 + L2 LINE L2 3134 3229 -43 934 180 31 10 chr12 106169914 106170108 -37616347 - MIR SINE MIR -2 260 63 3030 92 3 0 chr12 106170508 106170879 -37615576 - THE1C LTR MaLR -3 372 1 9952 111 56 48 chr12 106170879 106172446 -37614009 - THE1C-int LTR MaLR 0 1580 1 2795 108 8 0 chr12 106172446 106172816 -37613639 - THE1C LTR MaLR 0 375 3 1378 228 27 21 chr12 106173072 106173405 -37613050 + MLT1J LTR MaLR 1 335 -176 22 0 0 0 chr12 106173580 106173602 -37612853 + AT_rich Low_complexity Low_complexity 1 22 0 511 288 66 30 chr12 106173730 106173928 -37612527 + MER63A DNA MER1_type 2 206 -4 21 0 0 0 chr12 106175442 106175463 -37610992 + AT_rich Low_complexity Low_complexity 1 21 0 2284 93 3 3 chr12 106175529 106175829 -37610626 - AluY SINE Alu -11 300 1 672 189 157 19 chr12 106176058 106176217 -37610238 + MER5A DNA MER1_type 9 189 0 515 311 7 0 chr12 106176292 106176440 -37610015 - MIR SINE MIR -19 243 95 370 222 236 0 chr12 106176600 106176744 -37609711 - L1MC4 LINE L1 -1 8041 7864 1068 90 35 80 chr12 106176823 106177023 -37609432 - L1MA3 LINE L1 -5 6300 6110 6531 114 56 6 chr12 106177035 106178165 -37608290 - L1MA2 LINE L1 0 6304 5117 2278 134 73 32 chr12 106178170 106178198 -37608257 + MSTA LTR MaLR 1 26 -402 1868 158 166 19 chr12 106178198 106178571 -37607884 + MSTA LTR MaLR 1 428 0 2278 134 73 32 chr12 106178571 106178953 -37607502 + MSTA LTR MaLR 26 428 0 1474 150 0 4 chr12 106178953 106179206 -37607249 - L1MA2 LINE L1 -1026 5120 4869 1780 243 71 60 chr12 106179218 106179440 -37607015 - L1MC4 LINE L1 -145 7897 7679 2453 80 0 6 chr12 106179440 106179752 -37606703 - AluSg SINE Alu 0 310 1 1780 243 71 60 chr12 106179752 106180258 -37606197 - L1MC4 LINE L1 -363 7679 7161 1641 166 16 44 chr12 106180309 106180628 -37605827 - AluJb SINE Alu -2 310 1 953 133 0 0 chr12 106180628 106180763 -37605692 - AluJb SINE Alu -177 135 1 255 125 0 0 chr12 106181680 106181720 -37604735 + (TCCCC)n Simple_repeat Simple_repeat 4 43 0 * 486 193 11 33 chr12 106181718 106181899 -37604556 + CT-rich Low_complexity Low_complexity 2 178 0 1095 268 82 79 chr12 106181996 106182303 -37604152 - L1MC4a LINE L1 -943 6865 6560 2386 75 0 0 chr12 106182303 106182659 -37603796 + AluY SINE Alu 1 311 0 1095 268 82 79 chr12 106182659 106182877 -37603578 - L1MC4a LINE L1 -1248 6560 6344 2148 127 3 3 chr12 106182877 106183185 -37603270 + AluSx SINE Alu 1 308 -4 1095 268 82 79 chr12 106183185 106183467 -37602988 - L1MC4a LINE L1 -1464 6344 6055 1127 146 0 23 chr12 106183500 106183671 -37602784 - AluJb SINE Alu -13 299 133 254 152 51 13 chr12 106183671 106183750 -37602705 + (TA)n Simple_repeat Simple_repeat 2 83 0 793 149 18 0 chr12 106183772 106183886 -37602569 - AluJb SINE Alu -195 117 2 2679 227 42 11 chr12 106183887 106184549 -37601906 - L1MC4a LINE L1 -1801 6007 5325 2049 127 0 7 chr12 106185723 106186042 -37600413 + AluSx SINE Alu 5 312 0 1384 148 126 0 chr12 106186447 106186710 -37599745 - L1MB7 LINE L1 -17 6167 5872 484 156 41 82 chr12 106186721 106186843 -37599612 - L1MC2 LINE L1 -9 6335 6219 630 270 21 5 chr12 106187640 106187829 -37598626 - MIR SINE MIR 0 262 71 291 247 0 47 chr12 106187889 106187974 -37598481 + MIR3 SINE MIR 89 169 -39 1563 237 82 30 chr12 106187976 106188414 -37598041 + LTR16B LTR ERVL 1 461 -3 517 270 40 98 chr12 106188781 106188938 -37597517 + MIR SINE MIR 5 170 -92 2289 70 3 48 chr12 106188938 106189253 -37597202 - AluSp SINE Alu -12 301 1 2336 102 0 0 chr12 106189259 106189564 -37596891 - AluSg SINE Alu -5 305 1 517 270 40 98 chr12 106189564 106189673 -37596782 + MIR SINE MIR 175 262 0 2193 125 0 0 chr12 106189683 106189980 -37596475 - AluSx SINE Alu -10 302 6 332 266 44 38 chr12 106190903 106191061 -37595394 - MLT1J LTR MaLR -347 164 6 22 56 0 0 chr12 106191759 106191795 -37594660 + AT_rich Low_complexity Low_complexity 1 36 0 291 190 0 0 chr12 106192618 106192676 -37593779 + CT-rich Low_complexity Low_complexity 4 61 0 437 340 21 7 chr12 106192702 106192846 -37593609 + MIR SINE MIR 24 169 -93 1037 335 44 19 chr12 106193587 106194068 -37592387 + MLT1K LTR MaLR 72 564 -24 980 237 198 68 chr12 106194068 106194553 -37591902 + MLT1H LTR MaLR 2 549 0 3012 208 53 81 chr12 106194792 106196484 -37589971 - L1M4 LINE L1 -744 5402 2872 2115 102 54 36 chr12 106196484 106196816 -37589639 - THE1B LTR MaLR 0 364 27 922 79 3 9 chr12 106197028 106197143 -37589312 - L1PA11 LINE L1 -564 5604 5492 4278 79 42 0 chr12 106197143 106197686 -37588769 + L1PA11 LINE L1 5608 6174 0 922 79 3 9 chr12 106197686 106197715 -37588740 - L1P4 LINE L1 -676 5492 5464 2335 94 0 13 chr12 106197972 106198280 -37588175 - AluY SINE Alu -7 304 1 2335 98 13 0 chr12 106198334 106198639 -37587816 - AluSx SINE Alu -3 309 1 217 302 177 0 chr12 106198770 106198866 -37587589 + MIR SINE MIR 55 167 -95 300 191 16 0 chr12 106199410 106199473 -37586982 - MLT2B1 LTR ERVL 0 520 457 302 214 12 0 chr12 106199583 106199667 -37586788 + (TA)n Simple_repeat Simple_repeat 1 85 0 2031 186 72 38 chr12 106199716 106200163 -37586292 - MLT2B1 LTR ERVL -58 462 1 28 29 0 0 chr12 106200182 106200217 -37586238 + AT_rich Low_complexity Low_complexity 1 35 0 216 254 0 0 chr12 106200487 106200542 -37585913 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 237 308 48 29 chr12 106200880 106200984 -37585471 - L2 LINE L2 -5 3267 3162 * 269 230 92 0 chr12 106200960 106201047 -37585408 - L2 LINE L2 -104 3209 3115 1217 54 0 0 chr12 106201862 106202010 -37584445 - AluY SINE Alu -9 302 155 270 268 49 54 chr12 106202708 106202866 -37583589 - MIR SINE MIR -62 146 34 310 293 150 60 chr12 106203907 106204406 -37582049 + L1M2 LINE L1 473 1016 -5833 301 244 96 35 chr12 106204699 106204873 -37581582 + MIR SINE MIR 31 212 -41 784 280 70 4 chr12 106207097 106207354 -37579101 - L2 LINE L2 -210 3103 2830 401 281 25 16 chr12 106207643 106207764 -37578691 - MIR SINE MIR -52 210 89 257 274 118 59 chr12 106207843 106208029 -37578426 + L2 LINE L2 2191 2387 -927 272 341 209 3 chr12 106208052 106208339 -37578116 - L2 LINE L2 -22 3250 2905 1402 167 33 56 chr12 106208506 106208812 -37577643 - AluJb SINE Alu -13 299 1 390 119 17 0 chr12 106208812 106208871 -37577584 + MIR SINE MIR 87 146 -62 354 366 149 0 chr12 106208980 106209201 -37577254 + L2 LINE L2 2499 2752 -562 344 327 55 32 chr12 106209372 106209592 -37576863 + L2 LINE L2 3048 3272 0 25 0 0 0 chr12 106209973 106209998 -37576457 + AT_rich Low_complexity Low_complexity 1 25 0 1077 181 22 76 chr12 106210057 106210333 -37576122 - MLT1A2 LTR MaLR 0 374 114 538 184 37 37 chr12 106210582 106210691 -37575764 - MLT1A2 LTR MaLR -265 109 1 184 302 0 0 chr12 106210746 106210799 -37575656 + L3 LINE CR1 244 296 -1281 * 260 221 0 135 chr12 106210789 106210893 -37575562 - L2 LINE L2 -25 3288 3199 195 326 109 0 chr12 106211145 106211237 -37575218 - L2 LINE L2 -9 3263 3162 2662 46 0 0 chr12 106212170 106212472 -37573983 - AluY SINE Alu -9 302 1 288 265 49 43 chr12 106212653 106212769 -37573686 + MIR SINE MIR 32 148 -60 394 211 39 19 chr12 106212966 106213070 -37573385 + L1ME3A LINE L1 6065 6170 0 397 283 20 0 chr12 106213405 106213504 -37572951 - MER5A DNA MER1_type -85 104 4 1060 276 59 43 chr12 106213881 106214559 -37571896 - L1MDa LINE L1 -3379 3161 2471 22 0 0 0 chr12 106214907 106214929 -37571526 + AT_rich Low_complexity Low_complexity 1 22 0 589 268 59 41 chr12 106215322 106215542 -37570913 + MIR SINE MIR 32 255 -7 372 294 60 47 chr12 106215645 106215880 -37570575 - L1ME3A LINE L1 -9 6161 5924 480 263 53 0 chr12 106215906 106216077 -37570378 - L1ME3A LINE L1 -208 5962 5783 677 77 0 58 chr12 106216112 106216216 -37570239 + AluSp/q SINE Alu 215 312 -1 551 271 6 18 chr12 106216219 106216385 -37570070 - MIR SINE MIR -10 252 89 359 324 49 21 chr12 106217150 106217292 -37569163 - MIR SINE MIR -96 166 21 233 328 0 0 chr12 106217387 106217445 -37569010 - L2 LINE L2 -11 3261 3204 3767 128 42 7 chr12 106218183 106218777 -37567678 - L1MC1 LINE L1 -17 6316 5702 3056 153 58 16 chr12 106218777 106219505 -37566950 - L1MC/D LINE L1 -545 5788 5023 271 297 72 36 chr12 106219548 106219686 -37566769 + MIR SINE MIR 48 190 -72 416 307 24 24 chr12 106219816 106219982 -37566473 + L2 LINE L2 2556 2721 -593 234 299 89 102 chr12 106220137 106220462 -37565993 + L2 LINE L2 2947 3267 -5 22 0 0 0 chr12 106220703 106220725 -37565730 + AT_rich Low_complexity Low_complexity 1 22 0 253 190 165 33 chr12 106220920 106221041 -37565414 + MER113 DNA MER1_type? 7 143 -378 241 193 175 0 chr12 106221101 106221158 -37565297 + MER113 DNA MER1_type? 317 383 -138 440 266 174 19 chr12 106221337 106221544 -37564911 - MIR SINE MIR -15 247 9 706 246 56 19 chr12 106223093 106223308 -37563147 - MIR SINE MIR -5 257 35 2403 166 34 9 chr12 106223401 106223848 -37562607 + MLT1C LTR MaLR 6 463 -4 648 259 134 80 chr12 106223942 106224466 -37561989 - MLT1L LTR MaLR -45 570 19 1254 211 70 32 chr12 106225512 106225854 -37560601 - L1MA9 LINE L1 -37 6275 5921 206 169 15 0 chr12 106225866 106225931 -37560524 + (TA)n Simple_repeat Simple_repeat 1 66 0 30 69 0 0 chr12 106225936 106225994 -37560461 + AT_rich Low_complexity Low_complexity 1 58 0 313 197 158 0 chr12 106225998 106226074 -37560381 - L1MA9 LINE L1 -356 5935 5848 275 219 41 27 chr12 106226290 106226363 -37560092 + MIR SINE MIR 121 194 -68 193 235 59 0 chr12 106226459 106226510 -37559945 + L2 LINE L2 3218 3271 -1 863 114 0 38 chr12 106227070 106227201 -37559254 - FLAM_A SINE Alu -7 126 1 1682 190 79 0 chr12 106227484 106227800 -37558655 + MER58B DNA MER1_type 1 341 0 234 310 48 59 chr12 106228187 106228374 -37558081 - MER5A DNA MER1_type 0 189 5 232 191 48 0 chr12 106229714 106229756 -37556699 - MER91 DNA MER1_type -152 44 1 291 114 0 0 chr12 106229806 106229850 -37556605 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 274 382 49 7 chr12 106229850 106229994 -37556461 - L2 LINE L2 -17 3255 3106 56 39 0 0 chr12 106230039 106230116 -37556339 + AT_rich Low_complexity Low_complexity 1 77 0 1380 166 0 0 chr12 106230527 106230744 -37555711 - L1PA15 LINE L1 0 6165 5949 217 321 30 72 chr12 106230809 106231046 -37555409 + L2 LINE L2 2156 2382 -932 1651 182 25 50 chr12 106231075 106231438 -37555017 - MLT1A1 LTR MaLR -1 364 11 344 216 10 0 chr12 106231714 106231811 -37554644 + CT-rich Low_complexity Low_complexity 1 98 0 778 260 89 71 chr12 106232353 106232992 -37553463 + L1MEd LINE L1 965 1635 -4494 2020 141 3 3 chr12 106232992 106233282 -37553173 + AluSx SINE Alu 1 290 -22 778 260 89 71 chr12 106233282 106233327 -37553128 + L1MEd LINE L1 1635 1678 -4451 826 176 34 7 chr12 106233365 106233538 -37552917 + MER20 DNA MER1_type 7 155 -64 1067 184 102 5 chr12 106233779 106233975 -37552480 - MER20 DNA MER1_type -4 215 1 2155 128 0 3 chr12 106234412 106234710 -37551745 + AluSg SINE Alu 1 297 -13 800 202 39 14 chr12 106235377 106235619 -37550836 - L1MCa LINE L1 -3947 2479 2287 187 0 0 0 chr12 106236628 106236649 -37549806 + MER5C DNA MER1_type 4 24 -300 358 172 153 153 chr12 106236832 106236944 -37549511 - MER5A DNA MER1_type 0 189 75 1916 147 16 38 chr12 106236944 106237263 -37549192 - AluSx SINE Alu 0 312 1 358 172 153 153 chr12 106237263 106237313 -37549142 - MER5A DNA MER1_type -113 76 27 573 278 81 50 chr12 106237662 106237960 -37548495 - LTR16A LTR ERVL 0 491 144 537 306 24 103 chr12 106238436 106238766 -37547689 - L2 LINE L2 0 3272 2969 403 288 36 36 chr12 106238756 106238895 -37547560 + MIR3 SINE MIR 24 162 -46 * 435 230 50 141 chr12 106239086 106239369 -37547086 + MER112 DNA MER1_type 4 260 0 259 296 61 0 chr12 106239656 106239754 -37546701 - MLT1I LTR MaLR -25 384 281 * 497 273 123 62 chr12 106239729 106240129 -37546326 - MLT1H LTR MaLR -103 446 23 273 346 65 9 chr12 106240903 106241010 -37545445 - L2 LINE L2 -38 3234 3122 289 371 26 42 chr12 106241043 106241307 -37545148 + L2 LINE L2 2477 2736 -578 3609 119 72 7 chr12 106241309 106241878 -37544577 + L1MB5 LINE L1 5561 6166 -8 298 321 162 50 chr12 106242061 106242363 -37544092 + L2 LINE L2 2935 3270 -2 2214 119 0 0 chr12 106243172 106243467 -37542988 - AluSg SINE Alu -15 295 1 236 325 157 15 chr12 106243554 106243828 -37542627 + L2 LINE L2 2040 2352 -962 199 250 262 12 chr12 106244424 106244508 -37541947 - L3 LINE CR1 -12 1565 1461 1403 260 82 16 chr12 106245472 106245910 -37540545 - MLT1C LTR MaLR 0 467 1 186 281 184 44 chr12 106245924 106246038 -37540417 - MIR SINE MIR -62 146 17 323 294 138 12 chr12 106247046 106247206 -37539249 - MIR SINE MIR -8 254 75 249 275 110 18 chr12 106247292 106247401 -37539054 + MIR3 SINE MIR 78 196 -12 2966 182 58 9 chr12 106248115 106248647 -37537808 - MER68 LTR ERV1 -4 558 1 622 203 8 8 chr12 106249625 106249748 -37536707 + L2 LINE L2 3187 3309 -4 495 258 54 36 chr12 106249748 106249915 -37536540 - MIR SINE MIR -60 202 33 23 0 0 0 chr12 106250729 106250752 -37535703 + AT_rich Low_complexity Low_complexity 1 23 0 5916 205 57 29 chr12 106251636 106252187 -37534268 - L1 LINE L1 -2346 5219 4685 1652 188 32 23 chr12 106252187 106252496 -37533959 - AluJo SINE Alu 0 312 1 5916 205 57 29 chr12 106252496 106252572 -37533883 - L1 LINE L1 -2880 4685 4613 2780 170 14 2 chr12 106252572 106253055 -37533400 - L1MA7 LINE L1 -12 6279 5791 5916 205 57 29 chr12 106253055 106254184 -37532271 - L1 LINE L1 -2952 4613 3401 2344 195 5 15 chr12 106254203 106254614 -37531841 - Tigger7 DNA MER2_type -2078 409 3 1941 230 58 50 chr12 106254693 106255315 -37531140 - L1 LINE L1 -6393 1096 470 252 361 77 13 chr12 106255325 106255480 -37530975 + L2 LINE L2 3100 3264 -8 230 274 59 29 chr12 106256256 106256358 -37530097 + MIR SINE MIR 42 146 -62 424 301 60 27 chr12 106257001 106257184 -37529271 + MER5A DNA MER1_type 1 189 0 180 0 0 0 chr12 106257601 106257621 -37528834 + (T)n Simple_repeat Simple_repeat 1 20 0 3645 190 23 18 chr12 106258149 106258833 -37527622 - MER76 LTR ERV 0 688 1 198 135 0 27 chr12 106259042 106259079 -37527376 + L3 LINE CR1 1242 1277 -300 374 230 20 20 chr12 106259215 106259315 -37527140 + MIR SINE MIR 126 225 -37 6769 89 6 12 chr12 106259438 106261212 -37525243 - L1PA11 LINE L1 0 6174 4390 777 254 161 45 chr12 106261651 106262005 -37524450 - L1MC/D LINE L1 -2144 5664 5270 1059 247 10 10 chr12 106262029 106262329 -37524126 - AluSg SINE Alu 0 300 1 1523 203 59 13 chr12 106262777 106263082 -37523373 - MLT1A1 LTR MaLR -1 364 46 197 363 65 16 chr12 106263087 106263211 -37523244 + L2 LINE L2 3179 3308 -5 381 281 83 0 chr12 106263276 106263372 -37523083 + L3 LINE CR1 1461 1564 -13 279 235 0 0 chr12 106263497 106263565 -37522890 - L1ME3A LINE L1 -5 6165 6098 1254 209 14 5 chr12 106263663 106263883 -37522572 + MER58A DNA MER1_type 2 223 -1 21 0 0 0 chr12 106264889 106264910 -37521545 + AT_rich Low_complexity Low_complexity 1 21 0 364 303 49 27 chr12 106265285 106265470 -37520985 + MIR SINE MIR 48 236 -26 877 244 51 0 chr12 106265794 106266011 -37520444 - MIR SINE MIR -1 261 34 272 218 355 9 chr12 106266763 106266873 -37519582 - MIR3 SINE MIR -21 187 40 2117 104 0 80 chr12 106266873 106267199 -37519256 - AluSx SINE Alu -12 300 1 2554 57 0 0 chr12 106267700 106267999 -37518456 - AluY SINE Alu -12 299 1 22 56 0 0 chr12 106268165 106268201 -37518254 + AT_rich Low_complexity Low_complexity 1 36 0 304 271 113 45 chr12 106268362 106268495 -37517960 + MIR3 SINE MIR 17 158 -50 201 132 0 0 chr12 106268828 106268866 -37517589 + (A)n Simple_repeat Simple_repeat 1 38 0 275 171 113 30 chr12 106268892 106268986 -37517469 - MER5A DNA MER1_type -54 135 6 22 0 0 0 chr12 106269713 106269735 -37516720 + AT_rich Low_complexity Low_complexity 1 22 0 991 191 48 11 chr12 106269810 106269998 -37516457 - AluJo SINE Alu -18 294 100 1261 207 108 90 chr12 106270033 106270477 -37515978 - MER41B LTR ERV1 -36 599 148 741 144 0 0 chr12 106270519 106270623 -37515832 - AluJo SINE Alu -207 105 2 21 37 0 56 chr12 106270685 106270739 -37515716 + AT_rich Low_complexity Low_complexity 1 51 0 672 247 58 6 chr12 106272327 106272501 -37513954 + MIR SINE MIR 9 191 -71 213 254 111 40 chr12 106272628 106272754 -37513701 + L2 LINE L2 2216 2350 -964 195 42 0 0 chr12 106272829 106272853 -37513602 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 227 348 11 11 chr12 106272861 106272953 -37513502 - L2 LINE L2 -4 3268 3177 250 244 24 24 chr12 106273337 106273419 -37513036 - LTR33A LTR ERVL 0 523 442 235 236 0 18 chr12 106274708 106274763 -37511692 + CT-rich Low_complexity Low_complexity 2 55 0 5537 113 22 5 chr12 106274861 106275647 -37510808 - L1MC1 LINE L1 -2 6331 5533 252 390 44 0 chr12 106276685 106276821 -37509634 - L2 LINE L2 -8 3264 3123 257 345 34 42 chr12 106277008 106277246 -37509209 - L2 LINE L2 -218 3054 2819 506 269 215 32 chr12 106278480 106278852 -37507603 - L2 LINE L2 -22 3291 2852 265 237 230 17 chr12 106278968 106279088 -37507367 - MIR SINE MIR -63 145 11 188 271 0 0 chr12 106279589 106279637 -37506818 - L2 LINE L2 -4 3309 3262 1530 142 24 98 chr12 106280875 106281213 -37505242 + AluYb8 SINE Alu 1 313 -5 247 290 118 0 chr12 106282165 106282258 -37504197 - L2 LINE L2 -3 3310 3207 196 227 0 23 chr12 106282900 106282944 -37503511 + L2 LINE L2 3187 3229 -84 25 51 0 0 chr12 106286325 106286364 -37500091 + AT_rich Low_complexity Low_complexity 1 39 0 231 167 0 0 chr12 106286813 106286855 -37499600 + (TA)n Simple_repeat Simple_repeat 1 42 0 2203 81 11 3 chr12 106289602 106289887 -37496568 + AluSc SINE Alu 1 287 -22 251 228 141 87 chr12 106289891 106289983 -37496472 - MIR3 SINE MIR -31 177 81 372 308 25 8 chr12 106290386 106290506 -37495949 - L2 LINE L2 0 3272 3151 206 174 0 22 chr12 106291024 106291070 -37495385 + L2 LINE L2 2911 2955 -317 288 0 0 0 chr12 106291233 106291265 -37495190 + (TC)n Simple_repeat Simple_repeat 1 32 0 205 312 72 128 chr12 106291575 106291700 -37494755 - L2 LINE L2 -11 3261 3144 231 36 0 0 chr12 106292748 106292776 -37493679 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 364 252 8 59 chr12 106292821 106292940 -37493515 - L2 LINE L2 -94 3219 3107 398 259 43 22 chr12 106293756 106293895 -37492560 + MIR SINE MIR 12 153 -109 2427 76 3 0 chr12 106294522 106294825 -37491630 - AluSg SINE Alu 0 310 7 379 284 93 41 chr12 106295286 106295554 -37490901 - L1M4 LINE L1 -1304 4842 4561 5881 98 51 11 chr12 106295558 106296469 -37489986 - L1PA11 LINE L1 -7 6167 5222 301 248 10 50 chr12 106296508 106296609 -37489846 - L1M4 LINE L1 -1625 4521 4425 389 299 159 62 chr12 106296954 106297122 -37489333 - L2 LINE L2 0 3313 3163 1782 131 0 22 chr12 106297122 106297390 -37489065 + AluSx SINE Alu 35 296 -16 389 299 159 62 chr12 106297390 106297905 -37488550 - L2 LINE L2 -150 3163 2555 898 265 144 43 chr12 106297918 106298651 -37487804 - L2 LINE L2 0 3313 2510 192 273 0 0 chr12 106299975 106300041 -37486414 + (CA)n Simple_repeat Simple_repeat 2 67 0 243 341 63 24 chr12 106300054 106300180 -37486275 + L2 LINE L2 3137 3267 -5 713 235 13 0 chr12 106301402 106301555 -37484900 + Charlie2 DNA MER1_type 163 317 -2465 * 808 188 40 49 chr12 106301550 106301884 -37484571 + Charlie2 DNA MER1_type 2438 2820 -42 180 0 0 0 chr12 106301884 106301904 -37484551 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 808 188 40 49 chr12 106301904 106301946 -37484509 + Charlie2 DNA MER1_type 2820 2861 -1 621 172 0 16 chr12 106302208 106302336 -37484119 - L1MB8 LINE L1 -13 6165 6040 29 60 0 0 chr12 106303657 106303707 -37482748 + AT_rich Low_complexity Low_complexity 1 50 0 219 36 0 0 chr12 106303728 106303756 -37482699 + (TG)n Simple_repeat Simple_repeat 1 28 0 456 327 47 59 chr12 106304143 106304464 -37481991 - L2 LINE L2 -69 3203 2887 198 281 14 101 chr12 106304479 106304618 -37481837 - L2 LINE L2 -680 2634 2508 24 0 0 0 chr12 106304909 106304933 -37481522 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr12 106306139 106306169 -37480286 + AT_rich Low_complexity Low_complexity 1 30 0 313 302 111 23 chr12 106306579 106306699 -37479756 + MIR3 SINE MIR 22 163 -45 947 233 38 5 chr12 106306699 106306909 -37479546 + MER20 DNA MER1_type 3 219 0 313 302 111 23 chr12 106306909 106306960 -37479495 + MIR3 SINE MIR 163 208 0 450 154 0 0 chr12 106306977 106307055 -37479400 + (TA)n Simple_repeat Simple_repeat 2 79 0 509 341 87 28 chr12 106309672 106310062 -37476393 - L1MC4a LINE L1 -1900 5908 5496 201 138 0 0 chr12 106310600 106310629 -37475826 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 179 0 0 chr12 106312369 106312408 -37474047 + L2 LINE L2 3274 3312 -1 258 347 100 0 chr12 106313369 106313519 -37472936 - MIR SINE MIR -6 256 92 1952 268 125 27 chr12 106314785 106315678 -37470777 + L2 LINE L2 2315 3313 0 24 85 0 0 chr12 106315733 106315792 -37470663 + AT_rich Low_complexity Low_complexity 1 59 0 1947 102 23 8 chr12 106316857 106317113 -37469342 + AluSx SINE Alu 37 296 -16 516 317 24 44 chr12 106317257 106317506 -37468949 + MIR SINE MIR 13 256 -6 339 328 22 38 chr12 106318031 106318214 -37468241 + MIR SINE MIR 34 213 -49 515 293 2 48 chr12 106319789 106319956 -37466499 + MIR3 SINE MIR 14 175 -33 213 341 37 24 chr12 106320329 106320411 -37466044 - L3 LINE CR1 -14 1563 1481 241 293 65 16 chr12 106322012 106322135 -37464320 - LTR67 LTR ERVL 0 557 429 1227 285 45 39 chr12 106322601 106323092 -37463363 - L2 LINE L2 -8 3305 2812 227 290 122 0 chr12 106323265 106323372 -37463083 + L2 LINE L2 3145 3264 -8 249 295 33 0 chr12 106324356 106324417 -37462038 - L2 LINE L2 -36 3277 3215 1619 36 0 0 chr12 106324428 106324621 -37461834 - L1PA5 LINE L1 -8 6146 5954 798 255 78 41 chr12 106325270 106325513 -37460942 - MIR SINE MIR 0 262 11 912 118 0 15 chr12 106325574 106325710 -37460745 + FLAM_C SINE Alu 3 136 -7 612 163 0 0 chr12 106325720 106325818 -37460637 + FRAM SINE Alu 69 166 -10 750 112 0 0 chr12 106326223 106326330 -37460125 + AluSg/x SINE Alu 198 304 -8 1209 231 83 15 chr12 106327288 106327686 -37458769 + HsTC2 DNA Tc2 1282 1882 -16 213 39 0 0 chr12 106328201 106328227 -37458228 + (TAA)n Simple_repeat Simple_repeat 2 27 0 424 254 16 32 chr12 106328516 106328642 -37457813 - MIR SINE MIR -119 143 20 274 266 75 21 chr12 106328695 106328789 -37457666 - L3 LINE CR1 -276 1301 1203 941 242 154 23 chr12 106329416 106329759 -37456696 - L2 LINE L2 0 3313 2926 255 61 0 0 chr12 106330474 106330507 -37455948 + (TG)n Simple_repeat Simple_repeat 1 33 0 1523 221 13 43 chr12 106330632 106331008 -37455447 - MLT1A1 LTR MaLR 0 365 1 209 320 101 16 chr12 106331159 106331328 -37455127 + MIR SINE MIR 5 260 -2 288 0 0 0 chr12 106332065 106332097 -37454358 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 919 327 110 37 chr12 106332102 106333354 -37453101 - L2 LINE L2 -18 3295 1730 322 188 59 79 chr12 106333540 106333641 -37452814 + MLT1K LTR MaLR 436 534 -54 189 318 114 0 chr12 106333908 106333996 -37452459 - MIR3 SINE MIR -21 187 90 516 320 82 14 chr12 106334027 106334246 -37452209 + MIR SINE MIR 19 252 -10 487 145 131 0 chr12 106334392 106334515 -37451940 - L1MD1 LINE L1 -17 6225 6105 208 264 154 0 chr12 106334657 106334748 -37451707 + MIR SINE MIR 61 165 -97 440 319 75 86 chr12 106334932 106335317 -37451138 + L2 LINE L2 2892 3272 0 2468 50 0 0 chr12 106335553 106335836 -37450619 - AluY SINE Alu -16 295 13 476 274 92 26 chr12 106336469 106336622 -37449833 - MER5B DNA MER1_type -15 163 1 214 366 114 8 chr12 106337050 106337173 -37449282 + L2 LINE L2 3137 3272 0 338 314 101 28 chr12 106337636 106337884 -37448571 - L1MC4a LINE L1 -1967 5824 5559 23 33 0 0 chr12 106338202 106338232 -37448223 + AT_rich Low_complexity Low_complexity 1 30 0 587 277 117 33 chr12 106338960 106339505 -37446950 - L1ME4a LINE L1 -265 5856 5266 834 277 117 30 chr12 106339752 106340206 -37446249 - L2 LINE L2 -153 3160 2671 542 240 98 71 chr12 106340357 106340723 -37445732 - MLT1J LTR MaLR 0 511 136 750 282 32 16 chr12 106341052 106341682 -37444773 - L1MC4a LINE L1 -698 5455 4712 312 241 51 29 chr12 106342121 106342258 -37444197 - L1P LINE L1 -4167 1979 1840 380 275 72 50 chr12 106342485 106342707 -37443748 - L1MC4a LINE L1 -4914 1205 979 340 403 83 32 chr12 106343845 106344254 -37442201 - L2 LINE L2 -8 3264 2835 232 289 10 52 chr12 106344956 106345053 -37441402 - L2 LINE L2 -767 2547 2455 342 301 239 14 chr12 106345445 106345658 -37440797 - MIR SINE MIR 0 262 2 1603 168 105 0 chr12 106346183 106346498 -37439957 - MER7A DNA MER2_type 0 346 1 886 265 78 50 chr12 106347264 106347585 -37438870 + MLT1I LTR MaLR 80 409 0 220 300 82 12 chr12 106347782 106347949 -37438506 + L2 LINE L2 3143 3300 -13 333 256 217 31 chr12 106348725 106348854 -37437601 - L2 LINE L2 0 3313 3161 452 233 0 0 chr12 106348854 106348940 -37437515 - Tigger3b DNA MER2_type 0 1241 1156 589 137 0 0 chr12 106348940 106349035 -37437420 - LTR12 LTR ERV1 -5 709 615 310 198 33 22 chr12 106349037 106349128 -37437327 - LTR30 LTR ERV1 -79 643 552 1204 140 208 0 chr12 106349128 106349364 -37437091 - LTR12 LTR ERV1 -429 285 1 4692 110 53 5 chr12 106349366 106350145 -37436310 - Tigger3b DNA MER2_type -79 1152 337 30 0 0 0 chr12 106350145 106350175 -37436280 + AT_rich Low_complexity Low_complexity 1 30 0 761 150 0 39 chr12 106350178 106350305 -37436150 - FLAM_A SINE Alu -19 123 2 2055 144 9 0 chr12 106350310 106350390 -37436065 - Tigger3b DNA MER2_type -895 336 258 2282 113 7 0 chr12 106350390 106350699 -37435756 - AluSq SINE Alu -2 311 1 2055 144 9 0 chr12 106350699 106350951 -37435504 - Tigger3b DNA MER2_type -973 258 1 655 263 113 62 chr12 106350952 106351474 -37434981 - L2 LINE L2 -157 3156 2587 328 290 0 32 chr12 106351467 106351560 -37434895 + L2 LINE L2 3001 3090 -182 * 996 240 39 71 chr12 106351569 106351978 -37434477 - MER97a DNA MER1_type? -498 396 1 854 257 102 93 chr12 106352023 106352463 -37433992 - MLT1K LTR MaLR -112 476 33 4278 57 124 0 chr12 106352770 106353352 -37433103 - L1PA8 LINE L1 -7 6165 5512 1889 61 24 0 chr12 106353353 106353734 -37432721 + L1PA8 LINE L1 5106 5492 -662 886 274 159 16 chr12 106353764 106354216 -37432239 - LTR33 LTR ERVL 0 521 5 577 286 26 51 chr12 106354640 106354913 -37431542 - ERVL LTR ERVL -733 5031 4766 341 263 34 25 chr12 106355171 106355289 -37431166 - ERVL LTR ERVL -3184 2580 2462 266 105 0 0 chr12 106355325 106355363 -37431092 - MLT2B1 LTR ERVL 0 397 360 1096 224 137 36 chr12 106355384 106355666 -37430789 - MLT2B1 LTR ERVL -127 393 141 192 40 0 0 chr12 106355666 106355691 -37430764 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 207 0 0 0 chr12 106355690 106355713 -37430742 + (CA)n Simple_repeat Simple_repeat 1 23 0 1096 224 137 36 chr12 106355691 106355787 -37430668 - MLT2B1 LTR ERVL -379 141 1 1183 318 67 5 chr12 106355806 106356373 -37430082 - ERVL LTR ERVL -3357 2407 1806 607 215 31 52 chr12 106356879 106357070 -37429385 - MER58C DNA MER1_type -26 189 3 288 189 67 56 chr12 106357405 106357495 -37428960 - ERVL LTR ERVL -4839 925 835 1878 155 0 36 chr12 106359682 106360011 -37426444 - MLT1A1 LTR MaLR -39 326 10 189 0 0 0 chr12 106360207 106360228 -37426227 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 186 348 14 14 chr12 106360228 106360297 -37426158 - L2 LINE L2 -17 3255 3187 2104 131 134 11 chr12 106360907 106361288 -37425167 + MSTA LTR MaLR 1 428 0 9096 168 26 6 chr12 106361290 106362589 -37423866 + MSTA-int LTR MaLR 3 1342 -309 2144 148 0 0 chr12 106362589 106362899 -37423556 - AluSx SINE Alu -2 310 1 9096 168 26 6 chr12 106362899 106363216 -37423239 + MSTA-int LTR MaLR 1342 1651 0 856 99 167 0 chr12 106363217 106363379 -37423076 + MSTA LTR MaLR 3 191 -237 525 212 190 11 chr12 106363394 106363578 -37422877 - MLT1J2 LTR MaLR -221 229 13 191 262 66 33 chr12 106363678 106363739 -37422716 - L2 LINE L2 -13 3259 3197 * 1124 249 299 37 chr12 106363716 106364065 -37422390 - L2 LINE L2 -726 2588 2332 745 270 6 6 chr12 106364065 106364243 -37422212 + MER45A DNA AcHobo 1 178 0 1124 249 299 37 chr12 106364243 106364762 -37421693 - L2 LINE L2 -982 2332 1492 1409 187 4 0 chr12 106364762 106365024 -37421431 - L1 LINE L1 -1218 4928 4666 2630 135 2 29 chr12 106365024 106365503 -37420952 + L1MA7 LINE L1 5813 6279 -12 522 266 182 42 chr12 106365520 106365877 -37420578 - L2 LINE L2 -1806 1508 1102 350 319 142 0 chr12 106365859 106366000 -37420455 - MIR SINE MIR -99 163 3 * 215 368 72 48 chr12 106366301 106366426 -37420029 - L2 LINE L2 -16 3256 3129 210 262 202 0 chr12 106367560 106367644 -37418811 + L2 LINE L2 3208 3308 -5 244 348 56 0 chr12 106367709 106367798 -37418657 + L2 LINE L2 3168 3261 -11 189 250 21 0 chr12 106367821 106367869 -37418586 - L2 LINE L2 -2 3311 3263 569 261 195 0 chr12 106368388 106368603 -37417852 - MIR SINE MIR -3 259 3 823 29 0 0 chr12 106369075 106369177 -37417278 - L1PA4 LINE L1 -215 5939 5838 1701 34 0 0 chr12 106369183 106369378 -37417077 + L1PA4 LINE L1 5949 6152 -3 642 253 7 13 chr12 106369659 106369809 -37416646 + MIR3 SINE MIR 45 193 -15 340 364 8 0 chr12 106369982 106370103 -37416352 + MIR SINE MIR 51 172 -90 552 287 122 30 chr12 106370169 106370399 -37416056 - MIR SINE MIR 0 262 12 616 267 68 0 chr12 106370485 106370631 -37415824 - MIR SINE MIR -90 172 17 2043 112 0 7 chr12 106370760 106371084 -37415371 - AluSx SINE Alu 0 322 1 908 206 57 0 chr12 106371374 106371568 -37414887 - MER58A DNA MER1_type -18 206 2 1674 191 99 60 chr12 106372596 106372786 -37413669 - MLT1D LTR MaLR 0 505 324 2146 123 0 0 chr12 106372786 106373078 -37413377 - AluSx SINE Alu -20 292 1 1674 191 99 60 chr12 106373078 106373373 -37413082 - MLT1D LTR MaLR -181 324 1 877 245 37 17 chr12 106373557 106373798 -37412657 + MIR SINE MIR 17 262 0 222 367 57 13 chr12 106374090 106374248 -37412207 + L2 LINE L2 2454 2618 -696 1213 186 23 14 chr12 106374702 106374923 -37411532 + MER58A DNA MER1_type 1 223 -1 376 252 162 0 chr12 106375703 106375814 -37410641 + L2 LINE L2 3185 3313 0 653 254 141 40 chr12 106376353 106376822 -37409633 - LTR33 LTR ERVL -5 516 1 232 175 79 32 chr12 106376822 106376885 -37409570 - MIR3 SINE MIR -42 166 101 192 40 0 0 chr12 106376955 106376980 -37409475 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4981 37 0 0 chr12 106376980 106377569 -37408886 - L1PA3 LINE L1 -18 6137 5549 2359 30 17 0 chr12 106377569 106377892 -37408563 + L1PA3 LINE L1 5236 5563 -591 200 182 18 36 chr12 106377942 106377997 -37408458 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 303 241 109 44 chr12 106377997 106378134 -37408321 - L1ME LINE L1 -267 5854 5709 280 347 83 26 chr12 106378168 106378361 -37408094 - MIR SINE MIR -1 261 58 340 218 40 20 chr12 106378432 106378533 -37407922 - L1ME LINE L1 -421 5700 5598 5356 148 6 34 chr12 106378701 106379656 -37406799 - L1MC1 LINE L1 0 6333 5405 35 24 0 0 chr12 106379660 106379702 -37406753 + AT_rich Low_complexity Low_complexity 1 42 0 2972 159 32 37 chr12 106379709 106380357 -37406098 - L1MA8 LINE L1 -5 6286 5642 1129 206 91 52 chr12 106380616 106380946 -37405509 + MER2 DNA MER2_type 2 344 0 207 250 304 18 chr12 106381000 106381112 -37405343 - L2 LINE L2 -5 3308 3165 241 284 9 37 chr12 106381703 106381812 -37404643 - MLT1H LTR MaLR -387 162 57 2468 22 0 0 chr12 106382802 106383077 -37403378 + AluYa5 SINE Alu 36 310 -1 2381 95 0 3 chr12 106383642 106383946 -37402509 - AluSq SINE Alu -10 303 1 22 0 0 0 chr12 106383950 106383972 -37402483 + AT_rich Low_complexity Low_complexity 1 22 0 1110 202 80 36 chr12 106384197 106384533 -37401922 + MLT1D LTR MaLR 1 351 -154 390 236 164 14 chr12 106384597 106384737 -37401718 + MLT1C LTR MaLR 345 467 0 849 279 58 0 chr12 106384940 106385180 -37401275 - MIR SINE MIR -6 256 3 353 279 98 22 chr12 106386106 106386289 -37400166 + MIR SINE MIR 51 247 -15 21 82 0 0 chr12 106386672 106386721 -37399734 + AT_rich Low_complexity Low_complexity 1 49 0 544 248 33 20 chr12 106387921 106388074 -37398381 - MIR SINE MIR -74 188 34 204 224 0 20 chr12 106388093 106388142 -37398313 - MIR SINE MIR -39 223 176 301 223 21 0 chr12 106388278 106388372 -37398083 + CT-rich Low_complexity Low_complexity 2 97 0 201 74 0 0 chr12 106388373 106388400 -37398055 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2072 35 8 8 chr12 106388400 106388654 -37397801 - L1PA5 LINE L1 -11 6143 5890 1204 39 0 0 chr12 106388655 106388808 -37397647 + L1PA5 LINE L1 5752 5904 -250 258 178 0 0 chr12 106388957 106389002 -37397453 + L2 LINE L2 3269 3313 0 496 187 22 88 chr12 106390197 106390379 -37396076 - L1MC5 LINE L1 -45 7916 7747 22 0 0 0 chr12 106390797 106390819 -37395636 + AT_rich Low_complexity Low_complexity 1 22 0 635 274 48 35 chr12 106390983 106391220 -37395235 + MIR SINE MIR 7 241 -21 13905 80 3 11 chr12 106393044 106395459 -37390996 - L1P3 LINE L1 -419 5735 3345 21 0 0 0 chr12 106395592 106395613 -37390842 + AT_rich Low_complexity Low_complexity 1 21 0 6016 269 128 34 chr12 106395663 106398326 -37388129 - L2 LINE L2 -157 3156 242 410 372 69 37 chr12 106398469 106398902 -37387553 + L2 LINE L2 2811 3257 -15 553 344 71 19 chr12 106398924 106399232 -37387223 - L3 LINE CR1 -238 1339 1016 2031 92 54 7 chr12 106399383 106399678 -37386777 + AluSp SINE Alu 5 313 0 22 99 0 0 chr12 106399781 106399852 -37386603 + AT_rich Low_complexity Low_complexity 1 71 0 274 253 35 35 chr12 106400340 106400427 -37386028 - LTR67 LTR ERVL -3 554 468 458 301 20 46 chr12 106401036 106401189 -37385266 + MIR SINE MIR 25 173 -89 313 164 0 0 chr12 106401190 106401245 -37385210 - MER53 DNA DNA 0 189 135 360 108 78 108 chr12 106401325 106401427 -37385028 + MER53 DNA DNA 91 189 0 673 279 63 40 chr12 106402388 106402610 -37383845 - MIR SINE MIR 0 262 36 349 280 176 0 chr12 106403274 106403399 -37383056 - MIR SINE MIR -71 191 45 2197 125 3 0 chr12 106403414 106403725 -37382730 + AluSx SINE Alu 1 312 0 870 126 0 0 chr12 106403730 106403857 -37382598 + AluSg/x SINE Alu 179 305 -7 24 0 0 0 chr12 106404526 106404550 -37381905 + AT_rich Low_complexity Low_complexity 1 24 0 1319 143 50 4 chr12 106404614 106404852 -37381603 + Tigger7 DNA MER2_type 2233 2481 -6 191 302 23 0 chr12 106404867 106404910 -37381545 - MIR SINE MIR -166 96 53 1664 178 13 26 chr12 106405990 106406299 -37380156 - AluJo SINE Alu -7 305 1 213 350 154 8 chr12 106406951 106407068 -37379387 - MIR SINE MIR -116 146 13 193 288 0 45 chr12 106407617 106407683 -37378772 - L2 LINE L2 -16 3256 3194 566 156 21 10 chr12 106408076 106408172 -37378283 + AluJb SINE Alu 200 296 -16 1636 196 4 4 chr12 106409230 106409511 -37376944 + AluJb SINE Alu 9 289 -23 249 279 36 43 chr12 106409528 106409668 -37376787 - L1ME4a LINE L1 -46 6075 5937 6670 134 63 3 chr12 106409668 106410830 -37375625 + Tigger3b DNA MER2_type 1 1231 0 417 86 0 0 chr12 106410847 106410905 -37375550 + (TG)n Simple_repeat Simple_repeat 1 58 0 476 44 0 15 chr12 106410905 106410973 -37375482 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 309 183 37 24 chr12 106410985 106411067 -37375388 - L1ME4a LINE L1 -235 5886 5804 240 367 11 0 chr12 106411438 106411528 -37374927 + MIR SINE MIR 38 128 -80 462 285 104 0 chr12 106412045 106412189 -37374266 - MIR SINE MIR -13 249 91 400 215 66 58 chr12 106412286 106412407 -37374048 - L2 LINE L2 0 3313 3192 7229 51 0 3 chr12 106414313 106415397 -37371058 - L1PA6 LINE L1 0 6154 5072 261 279 88 0 chr12 106415482 106415550 -37370905 - MIR SINE MIR -90 172 99 1206 54 0 0 chr12 106416517 106416666 -37369789 - L1PA7 LINE L1 -181 5991 5843 1443 18 12 0 chr12 106416666 106416832 -37369623 + L1PA7 LINE L1 5985 6154 0 581 169 0 8 chr12 106416929 106417047 -37369408 + (TA)n Simple_repeat Simple_repeat 1 117 0 221 339 161 17 chr12 106417105 106417279 -37369176 - MIR SINE MIR -10 252 54 210 148 56 130 chr12 106417589 106417643 -37368812 - L2 LINE L2 -30 3242 3193 294 50 0 0 chr12 106417772 106417812 -37368643 + (TG)n Simple_repeat Simple_repeat 2 41 0 259 262 48 39 chr12 106418159 106418262 -37368193 + L2 LINE L2 3209 3312 -1 351 219 325 0 chr12 106419444 106419558 -37366897 + MIR SINE MIR 103 253 -9 423 273 55 9 chr12 106419644 106419754 -37366701 - MIR SINE MIR -128 134 20 4596 87 30 4 chr12 106420155 106420830 -37365625 - L1MA3 LINE L1 0 6305 5614 3421 145 3 5 chr12 106421063 106421743 -37364712 - L1MA3 LINE L1 -743 5403 4768 324 300 250 0 chr12 106422643 106422823 -37363632 + MIR SINE MIR 24 248 -14 11918 62 8 1 chr12 106424290 106426606 -37359849 - L1PA6 LINE L1 0 6154 3813 277 285 49 41 chr12 106426827 106426950 -37359505 + L2 LINE L2 3144 3267 -5 996 189 28 32 chr12 106427425 106427642 -37358813 - MER20 DNA MER1_type -1 218 3 303 298 226 11 chr12 106427950 106428131 -37358324 - MIR SINE MIR -6 256 37 615 239 115 46 chr12 106428360 106428620 -37357835 - L2 LINE L2 0 3313 3036 226 232 36 0 chr12 106428685 106428741 -37357714 + L2 LINE L2 3251 3308 -5 1725 215 138 9 chr12 106428796 106429238 -37357217 - MLT1D LTR MaLR 0 505 7 274 315 9 27 chr12 106429464 106429575 -37356880 + L2 LINE L2 3164 3272 0 23 0 0 0 chr12 106430100 106430123 -37356332 + AT_rich Low_complexity Low_complexity 1 23 0 325 278 31 0 chr12 106431477 106431574 -37354881 - MIR3 SINE MIR -28 180 81 298 226 22 66 chr12 106432255 106432392 -37354063 - MER112 DNA MER1_type -101 159 29 786 297 62 49 chr12 106432552 106433040 -37353415 - L1ME3A LINE L1 -207 5963 5470 2297 82 0 0 chr12 106433134 106433455 -37353000 - AluSg SINE Alu 0 324 4 21 0 0 0 chr12 106435538 106435559 -37350896 + AT_rich Low_complexity Low_complexity 1 21 0 3515 267 162 22 chr12 106437000 106438484 -37347971 - L2 LINE L2 -5 3308 1570 566 258 26 26 chr12 106438465 106438655 -37347800 + L2 LINE L2 1411 1600 -1714 * 313 294 164 0 chr12 106438859 106439005 -37347450 - MIR SINE MIR -57 205 36 1856 72 155 40 chr12 106439072 106439349 -37347106 + AluY SINE Alu 1 309 -2 240 298 75 32 chr12 106439463 106439557 -37346898 + MIR SINE MIR 31 128 -134 670 213 66 5 chr12 106439656 106439867 -37346588 - MER113 DNA MER1_type? -277 244 21 2096 216 53 68 chr12 106439891 106440493 -37345962 + MLT1E LTR MaLR 1 593 0 494 291 181 0 chr12 106440493 106440703 -37345752 + MIR SINE MIR 14 261 -1 201 133 0 0 chr12 106441023 106441053 -37345402 + (CAA)n Simple_repeat Simple_repeat 2 31 0 545 251 160 46 chr12 106441657 106441964 -37344491 - LTR16A1 LTR ERVL -1 456 115 4219 104 12 10 chr12 106442214 106442818 -37343637 + L1PA12 LINE L1 5356 5960 -208 1117 193 14 31 chr12 106442975 106443198 -37343257 - MER20 DNA MER1_type 0 219 1 674 272 43 36 chr12 106443339 106443577 -37342878 + MIR SINE MIR 7 241 -21 505 358 115 10 chr12 106446548 106446614 -37339841 - L2 LINE L2 -14 3258 3200 1806 229 209 12 chr12 106446614 106447111 -37339344 - MLT1G1 LTR MaLR 0 595 1 505 358 115 10 chr12 106447111 106447340 -37339115 - L2 LINE L2 -72 3200 2932 2243 185 61 34 chr12 106448531 106448974 -37337481 - MSTB2 LTR MaLR 0 457 3 1138 133 6 6 chr12 106449065 106449245 -37337210 - AluSx SINE Alu -11 301 122 615 146 0 0 chr12 106449245 106449341 -37337114 + MSTB2 LTR MaLR 362 457 0 862 132 22 37 chr12 106449343 106449479 -37336976 - AluSx SINE Alu -178 134 1 601 297 85 52 chr12 106449504 106449834 -37336621 + L2 LINE L2 999 1339 -1975 759 205 21 147 chr12 106449886 106450040 -37336415 - L2 LINE L2 -39 3274 3181 1246 194 21 24 chr12 106450040 106450329 -37336126 + AluJb SINE Alu 1 288 -24 759 205 21 147 chr12 106450329 106450501 -37335954 - L2 LINE L2 -132 3181 2989 1446 272 129 35 chr12 106450510 106451360 -37335095 + L2 LINE L2 1289 2218 -1096 225 132 0 0 chr12 106451713 106451751 -37334704 + (CA)n Simple_repeat Simple_repeat 2 39 0 656 39 0 0 chr12 106452010 106452088 -37334367 + L1PA8 LINE L1 6094 6171 -1 185 315 102 37 chr12 106452557 106452665 -37333790 + L2 LINE L2 3150 3264 -8 276 250 16 0 chr12 106452823 106452887 -37333568 + MLT1J LTR MaLR 123 187 -324 316 156 0 0 chr12 106452966 106453011 -37333444 + MLT1I LTR MaLR 292 336 -73 1091 169 88 19 chr12 106453036 106453296 -37333159 - MER33 DNA MER1_type -36 288 11 470 171 0 0 chr12 106453305 106453381 -37333074 + MLT1I LTR MaLR 334 409 0 234 311 67 22 chr12 106453734 106453824 -37332631 - L2 LINE L2 -4 3268 3175 1285 252 42 29 chr12 106453878 106454255 -37332200 - MLT1E3 LTR MaLR 0 624 243 1316 304 52 8 chr12 106454301 106454837 -37331618 - L2 LINE L2 -672 2642 2083 372 59 0 0 chr12 106454949 106455000 -37331455 + (TG)n Simple_repeat Simple_repeat 2 52 0 289 279 38 25 chr12 106455122 106455201 -37331254 - MIR SINE MIR -61 147 68 322 297 50 10 chr12 106455405 106455506 -37330949 - MIR SINE MIR -80 182 78 668 283 71 10 chr12 106455692 106455890 -37330565 + MIR SINE MIR 32 241 -21 1347 266 56 13 chr12 106456133 106456528 -37329927 + L2 LINE L2 2902 3313 0 780 314 144 36 chr12 106456654 106457480 -37328975 + L2 LINE L2 2399 3310 -3 530 337 36 10 chr12 106457735 106457931 -37328524 - MIR SINE MIR -49 213 13 655 215 85 81 chr12 106457964 106458211 -37328244 + L2 LINE L2 2173 2420 -894 586 217 6 13 chr12 106458242 106458399 -37328056 + (CATATA)n Simple_repeat Simple_repeat 3 158 0 279 0 0 0 chr12 106459042 106459073 -37327382 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 305 114 36 chr12 106459420 106459587 -37326868 + MIR SINE MIR 83 262 0 22 0 0 0 chr12 106459754 106459776 -37326679 + AT_rich Low_complexity Low_complexity 1 22 0 200 339 25 41 chr12 106460644 106460765 -37325690 - L2 LINE L2 -1 3312 3194 542 290 177 11 chr12 106461610 106462096 -37324359 + L2 LINE L2 2543 3146 -167 384 292 0 26 chr12 106462097 106462210 -37324245 + CT-rich Low_complexity Low_complexity 2 111 0 29 0 0 0 chr12 106462310 106462339 -37324116 + GC_rich Low_complexity Low_complexity 1 29 0 23 92 0 0 chr12 106462373 106462438 -37324017 + GC_rich Low_complexity Low_complexity 1 65 0 212 200 32 32 chr12 106462473 106462568 -37323887 + (CCG)n Simple_repeat Simple_repeat 1 95 0 370 0 40 0 chr12 106462832 106462882 -37323573 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1973 122 17 0 chr12 106462882 106463169 -37323286 - AluSq SINE Alu -21 292 1 217 235 191 15 chr12 106463244 106463312 -37323143 + L2 LINE L2 3189 3268 -4 2109 150 54 8 chr12 106465687 106466074 -37320381 - L1MC2 LINE L1 0 6344 5940 30 0 0 0 chr12 106466505 106466535 -37319920 + AT_rich Low_complexity Low_complexity 1 30 0 1044 95 7 14 chr12 106467323 106467471 -37318984 - L1PB2 LINE L1 0 6151 6005 2172 103 3 58 chr12 106467565 106467895 -37318560 - AluSx SINE Alu 0 312 1 195 42 0 0 chr12 106468087 106468111 -37318344 + (A)n Simple_repeat Simple_repeat 1 24 0 882 233 44 0 chr12 106468666 106468846 -37317609 - MER5A DNA MER1_type -1 188 1 356 209 22 14 chr12 106469150 106469251 -37317204 + MIR SINE MIR 81 144 -64 822 178 0 22 chr12 106469561 106469696 -37316759 + FLAM_A SINE Alu 2 133 0 373 352 165 26 chr12 106469764 106470353 -37316102 + L2 LINE L2 2532 3222 -50 708 284 131 0 chr12 106470555 106470791 -37315664 - L3 LINE CR1 -4 1573 1307 326 311 142 48 chr12 106471548 106471898 -37314557 - L2 LINE L2 -1042 2272 1857 952 171 44 33 chr12 106471898 106472079 -37314376 - MER5A DNA MER1_type -3 186 4 326 311 142 48 chr12 106472079 106472243 -37314212 - L2 LINE L2 -1457 1857 1710 2330 68 0 40 chr12 106472337 106472658 -37313797 - AluY SINE Alu -3 308 1 437 99 28 0 chr12 106474039 106474110 -37312345 + GA-rich Low_complexity Low_complexity 2 74 0 186 43 0 0 chr12 106474123 106474146 -37312309 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 341 226 66 51 chr12 106474476 106474613 -37311842 - MIR SINE MIR -75 187 49 189 271 255 52 chr12 106475194 106475386 -37311069 - MIR SINE MIR -6 256 26 258 393 30 7 chr12 106475510 106475645 -37310810 - MIR3 SINE MIR -40 168 31 3096 207 43 12 chr12 106475924 106476529 -37309926 - MLT1E2 LTR MaLR 0 626 3 1592 132 9 0 chr12 106476715 106476942 -37309513 - AluSg/x SINE Alu -12 300 72 321 93 0 0 chr12 106476942 106476985 -37309470 + Alu SINE Alu 26 68 -233 269 330 11 0 chr12 106477226 106477317 -37309138 - MIR SINE MIR -108 154 63 987 241 73 8 chr12 106477973 106478218 -37308237 - MIR SINE MIR 0 262 2 1801 174 38 9 chr12 106478499 106478815 -37307640 + MLT2B1 LTR ERVL 1 325 -195 * 1976 199 8 1 chr12 106478806 106479197 -37307258 - MLT2B1 LTR ERVL -77 443 1 552 268 151 0 chr12 106480442 106480647 -37305808 - MLT1J2 LTR MaLR -4 446 211 21 0 0 0 chr12 106481160 106481181 -37305274 + AT_rich Low_complexity Low_complexity 1 21 0 2389 107 0 0 chr12 106481210 106481518 -37304937 + AluSg SINE Alu 1 308 -2 590 140 9 0 chr12 106482124 106482238 -37304217 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 209 274 0 0 chr12 106482354 106482405 -37304050 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 467 186 0 0 chr12 106482618 106482688 -37303767 + T-rich Low_complexity Low_complexity 1 70 0 550 275 0 0 chr12 106482703 106482874 -37303581 + C-rich Low_complexity Low_complexity 1 171 0 229 370 0 0 chr12 106482876 106482976 -37303479 + CT-rich Low_complexity Low_complexity 2 101 0 24 53 0 0 chr12 106485543 106485581 -37300874 + AT_rich Low_complexity Low_complexity 1 38 0 1994 126 4 0 chr12 106485717 106485994 -37300461 + AluSq SINE Alu 1 278 -35 789 309 126 31 chr12 106486020 106486606 -37299849 + L2 LINE L2 1986 2627 -687 1401 179 93 0 chr12 106486647 106486904 -37299551 + AluJb SINE Alu 24 304 -8 198 0 0 0 chr12 106490253 106490275 -37296180 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 239 0 0 chr12 106490276 106490322 -37296133 + (TA)n Simple_repeat Simple_repeat 2 47 0 185 363 29 0 chr12 106490337 106490439 -37296016 - MIR SINE MIR -81 181 77 265 243 153 0 chr12 106491456 106491567 -37294888 - MIR3 SINE MIR -46 162 35 21 36 0 0 chr12 106491753 106491781 -37294674 + AT_rich Low_complexity Low_complexity 1 28 0 354 100 0 0 chr12 106492680 106492740 -37293715 + (TTGG)n Simple_repeat Simple_repeat 2 61 0 22 0 0 0 chr12 106494672 106494694 -37291761 + AT_rich Low_complexity Low_complexity 1 22 0 201 243 0 0 chr12 106496736 106496773 -37289682 - MIR SINE MIR -87 121 85 937 260 206 39 chr12 106496931 106497560 -37288895 + L2 LINE L2 2580 3311 -2 464 44 0 15 chr12 106499590 106499658 -37286797 + (CATA)n Simple_repeat Simple_repeat 2 68 0 357 86 0 0 chr12 106499658 106499716 -37286739 + (GA)n Simple_repeat Simple_repeat 1 58 0 3726 106 19 9 chr12 106500412 106501334 -37285121 - L1PA8A LINE L1 -383 5748 4818 425 157 0 157 chr12 106501586 106501688 -37284767 - MER20 DNA MER1_type -130 89 4 898 117 25 128 chr12 106501764 106501960 -37284495 + AluSp SINE Alu 136 311 -2 182 352 56 37 chr12 106501960 106502068 -37284387 + L2 LINE L2 2994 3103 -169 513 270 157 0 chr12 106502877 106503081 -37283374 - MLT1J2 LTR MaLR -4 446 211 21 0 0 0 chr12 106503596 106503617 -37282838 + AT_rich Low_complexity Low_complexity 1 21 0 2364 103 0 6 chr12 106503646 106503957 -37282498 + AluSg SINE Alu 1 309 -1 388 153 31 0 chr12 106504574 106504672 -37281783 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 279 150 0 0 chr12 106504694 106504754 -37281701 + (ATTG)n Simple_repeat Simple_repeat 2 61 0 195 170 0 0 chr12 106504818 106504865 -37281590 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 657 169 6 23 chr12 106504922 106505094 -37281361 + (TGGA)n Simple_repeat Simple_repeat 3 171 0 22 0 0 0 chr12 106505470 106505492 -37280963 + AT_rich Low_complexity Low_complexity 1 22 0 353 346 87 56 chr12 106505581 106506029 -37280426 - L2 LINE L2 0 3272 2811 219 69 0 0 chr12 106506551 106506580 -37279875 + (A)n Simple_repeat Simple_repeat 1 29 0 539 333 90 52 chr12 106506920 106507815 -37278640 + L2 LINE L2 2346 3290 -23 1806 158 11 0 chr12 106507948 106508226 -37278229 + AluJo SINE Alu 2 282 -30 183 80 0 0 chr12 106508229 106508254 -37278201 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 431 203 188 22 chr12 106508390 106508528 -37277927 - MIR SINE MIR -25 237 77 676 274 163 42 chr12 106508548 106508905 -37277550 - MLT1J1 LTR MaLR -38 408 9 204 355 13 13 chr12 106508908 106508984 -37277471 - MIR SINE MIR -186 76 1 933 180 44 22 chr12 106508986 106509169 -37277286 - MER20 DNA MER1_type -3 216 30 385 261 17 34 chr12 106509750 106509869 -37276586 - L2 LINE L2 -9 3304 3188 919 190 0 34 chr12 106509909 106510088 -37276367 + MER20 DNA MER1_type 35 207 -12 404 266 187 58 chr12 106510113 106510537 -37275918 - L2 LINE L2 -161 3152 2678 226 262 0 0 chr12 106510809 106510851 -37275604 + L2 LINE L2 3143 3184 -88 2354 77 3 3 chr12 106511440 106511727 -37274728 + AluSq SINE Alu 1 287 -26 2423 70 7 0 chr12 106512091 106512389 -37274066 + AluSg SINE Alu 1 300 -10 3166 76 67 7 chr12 106513038 106513417 -37273038 + MLT2A1 LTR ERVL 1 409 -35 339 25 0 0 chr12 106513417 106513457 -37272998 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 3166 76 67 7 chr12 106513457 106513496 -37272959 + MLT2A1 LTR ERVL 409 444 0 828 213 116 10 chr12 106513898 106514105 -37272350 - MIR SINE MIR -1 261 33 2015 191 56 82 chr12 106514128 106514642 -37271813 - MLT1D LTR MaLR -4 501 1 279 200 22 89 chr12 106514753 106514800 -37271655 + MIR SINE MIR 166 206 -56 1996 132 0 16 chr12 106514800 106515104 -37271351 + AluSx SINE Alu 1 299 -13 279 200 22 89 chr12 106515104 106515146 -37271309 + MIR SINE MIR 206 249 -13 250 222 37 0 chr12 106515984 106516038 -37270417 - L2 LINE L2 -1 3271 3216 210 192 0 0 chr12 106516057 106516109 -37270346 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 304 337 129 10 chr12 106516431 106516624 -37269831 - MIR SINE MIR -27 235 20 363 325 110 25 chr12 106517242 106517405 -37269050 - MER91A DNA MER1_type 0 196 20 938 309 55 9 chr12 106518175 106518502 -37267953 - MLT1I LTR MaLR 0 409 68 856 125 0 0 chr12 106518720 106518856 -37267599 + L1MA6 LINE L1 6047 6182 -118 763 258 206 18 chr12 106519198 106519700 -37266755 - LTR50 LTR ERVL -117 678 1 340 250 179 51 chr12 106520533 106520689 -37265766 + MIR SINE MIR 12 187 -75 253 275 0 33 chr12 106520884 106520975 -37265480 + CT-rich Low_complexity Low_complexity 2 89 0 559 295 64 75 chr12 106521464 106521949 -37264506 + L1ME3A LINE L1 5599 6082 -88 1898 151 11 0 chr12 106522107 106522391 -37264064 + AluSx SINE Alu 1 287 -25 579 251 123 0 chr12 106522442 106522629 -37263826 - MIR SINE MIR -6 256 47 936 210 0 0 chr12 106522754 106522921 -37263534 - FRAM SINE Alu -10 166 1 1604 268 61 49 chr12 106523244 106524086 -37262369 - HAL1 LINE L1 -10 2497 1646 2346 171 5 0 chr12 106524088 106524467 -37261988 + MLT1B LTR MaLR 1 381 -9 1334 269 53 21 chr12 106524479 106524992 -37261463 - HAL1 LINE L1 -873 1634 1106 787 264 24 60 chr12 106524986 106525319 -37261136 - HAL1 LINE L1 -2184 323 3 * 808 236 154 90 chr12 106525855 106526355 -37260100 - MLT1H LTR MaLR 0 549 18 338 269 69 111 chr12 106526409 106526743 -37259712 - MLT1I-int LTR MaLR -24 1347 1028 380 279 69 111 chr12 106527173 106527506 -37258949 - MLT1I-int LTR MaLR -24 1347 1029 252 215 13 63 chr12 106527984 106528063 -37258392 - L2 LINE L2 -62 3210 3136 827 266 188 18 chr12 106528292 106528739 -37257716 - L2 LINE L2 -362 2952 2430 277 163 0 0 chr12 106528750 106528799 -37257656 - L1PA11 LINE L1 0 6174 6126 * 903 117 0 0 chr12 106528793 106528921 -37257534 + L1P4 LINE L1 5512 5639 -526 473 217 63 63 chr12 106528921 106529064 -37257391 - L2 LINE L2 -906 2408 2266 269 225 56 0 chr12 106529181 106529252 -37257203 - MIR SINE MIR -95 113 39 1023 160 55 30 chr12 106529411 106529611 -37256844 - MER3 DNA MER1_type -4 205 1 271 218 26 26 chr12 106530387 106530465 -37255990 + MIR SINE MIR 32 109 -153 1611 166 43 7 chr12 106530642 106530920 -37255535 - AluJo SINE Alu -24 288 1 990 281 77 27 chr12 106531145 106531547 -37254908 - L1MC4a LINE L1 -1867 5941 5520 2596 151 21 32 chr12 106531923 106532354 -37254101 - MSTB LTR MaLR 0 426 1 300 287 139 10 chr12 106532391 106532492 -37253963 - L2 LINE L2 -2 3270 3157 486 283 42 18 chr12 106532607 106532773 -37253682 - MIR SINE MIR -63 199 30 2653 100 17 11 chr12 106532871 106533230 -37253225 - THE1B LTR MaLR -3 361 1 820 237 48 25 chr12 106533408 106533648 -37252807 + MIR SINE MIR 1 231 -31 404 278 139 9 chr12 106534641 106534756 -37251699 + L2 LINE L2 3142 3271 -1 210 108 0 0 chr12 106534869 106534906 -37251549 - L2 LINE L2 -222 3050 3014 204 216 0 0 chr12 106535178 106535215 -37251240 + (CA)n Simple_repeat Simple_repeat 1 37 0 477 269 167 43 chr12 106536181 106536486 -37249969 - L2 LINE L2 -36 3277 2935 1584 234 210 34 chr12 106536699 106537356 -37249099 - LTR41 LTR ERVL 0 773 1 182 330 257 0 chr12 106537362 106537471 -37248984 + L3 LINE CR1 674 810 -767 24 0 0 0 chr12 106537670 106537694 -37248761 + AT_rich Low_complexity Low_complexity 1 24 0 415 338 72 57 chr12 106537694 106537957 -37248498 + L3 LINE CR1 817 1083 -494 1987 97 0 4 chr12 106538541 106538798 -37247657 - AluSg SINE Alu -17 293 38 413 238 0 12 chr12 106538884 106538968 -37247487 + L2 LINE L2 3185 3267 -5 1725 179 16 3 chr12 106539185 106539493 -37246962 + AluJb SINE Alu 1 312 0 2340 105 0 0 chr12 106540110 106540405 -37246050 + AluSx SINE Alu 1 295 -17 181 178 44 44 chr12 106540538 106540583 -37245872 - L2 LINE L2 -4 3309 3265 1714 224 105 78 chr12 106540901 106541464 -37244991 + L1MEc LINE L1 35 612 -5784 3191 223 70 20 chr12 106541465 106542402 -37244053 + L1M4 LINE L1 3726 4709 -1437 1143 185 105 16 chr12 106542418 106542732 -37243723 + L1M4 LINE L1 4861 5202 -944 * 25818 143 44 17 chr12 106542730 106545424 -37241031 + L1P3 LINE L1 1 2620 -3841 2130 130 0 0 chr12 106545424 106545717 -37240738 + AluSc SINE Alu 1 293 -16 25818 143 44 17 chr12 106545717 106548521 -37237934 + L1P3 LINE L1 2620 5718 -743 7749 20 1 0 chr12 106548224 106549267 -37237188 + L1PA3 LINE L1 5422 6465 -5 6263 93 4 9 chr12 106549269 106550450 -37236005 + L1PA6 LINE L1 4978 6154 0 321 300 250 0 chr12 106551916 106552096 -37234359 - MIR SINE MIR -14 248 24 3234 145 3 5 chr12 106552996 106553676 -37232779 + L1MA3 LINE L1 4768 5446 -743 5370 108 22 7 chr12 106553744 106554588 -37231867 + L1MA3 LINE L1 5449 6305 0 8503 94 2 0 chr12 106555109 106556583 -37229872 + L1P4 LINE L1 4163 5639 -529 3680 0 19 0 chr12 106556588 106556747 -37229708 + L1PA11 LINE L1 5325 5462 -712 3680 91 6 0 chr12 106556747 106557247 -37229208 + L1PA11 LINE L1 5652 6158 -16 3680 0 19 0 chr12 106557247 106557266 -37229189 + L1PA11 LINE L1 5462 6158 -16 4706 156 8 10 chr12 106557893 106558509 -37227946 + L1PA8A LINE L1 4865 5481 -650 2255 106 13 0 chr12 106558509 106558811 -37227644 + AluSg1 SINE Alu 1 306 -3 4706 156 8 10 chr12 106558811 106559439 -37227016 + L1PA8A LINE L1 5481 6113 -18 2786 222 82 18 chr12 106559441 106560371 -37226084 + L1ME1 LINE L1 5184 6161 -5 299 244 49 24 chr12 106560397 106560479 -37225976 - MIR SINE MIR -59 149 66 2010 107 23 7 chr12 106560543 106560851 -37225604 + L1PA15 LINE L1 5853 6165 0 4598 140 18 0 chr12 106560862 106561716 -37224739 + L1MA9 LINE L1 5319 6283 -29 185 315 178 0 chr12 106562641 106562714 -37223741 - L2 LINE L2 -31 3241 3156 320 283 66 28 chr12 106563506 106563612 -37222843 - MIR3 SINE MIR -86 122 13 804 148 0 0 chr12 106563626 106563741 -37222714 + FLAM_C SINE Alu 4 118 -25 198 0 0 0 chr12 106563745 106563767 -37222688 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 353 246 75 82 chr12 106563842 106563976 -37222479 + MIR3 SINE MIR 69 201 -7 1970 147 0 0 chr12 106564053 106564361 -37222094 + AluJo SINE Alu 1 308 0 394 319 52 6 chr12 106564415 106564573 -37221882 - MIR SINE MIR -66 196 38 2962 48 5 0 chr12 106565435 106565806 -37220649 - L1PA7 LINE L1 0 6154 5782 209 365 75 56 chr12 106566371 106566478 -37219977 - L2 LINE L2 -6 3266 3158 560 303 149 9 chr12 106568678 106568906 -37217549 + MIR SINE MIR 2 261 -1 201 284 0 88 chr12 106569040 106569142 -37217313 + MIR SINE MIR 119 211 -51 356 283 174 16 chr12 106570018 106570202 -37216253 - MIR SINE MIR -48 214 2 258 185 0 0 chr12 106570443 106570497 -37215958 - MLT1K LTR MaLR -12 576 523 2270 85 3 0 chr12 106571796 106572101 -37214354 + AluSx SINE Alu 1 306 0 291 209 147 53 chr12 106573734 106573846 -37212609 + MIR SINE MIR 34 156 -93 184 185 0 148 chr12 106574131 106574212 -37212243 + L2 LINE L2 2995 3063 -209 384 125 0 0 chr12 106574355 106574419 -37212036 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 284 250 11 43 chr12 106576007 106576099 -37210356 + MER117 DNA MER1_type 5 93 -104 576 245 198 19 chr12 106576405 106576617 -37209838 - MIR SINE MIR -1 261 12 593 258 84 38 chr12 106577600 106577813 -37208642 - MIR SINE MIR -11 251 29 2182 161 75 14 chr12 106578192 106578632 -37207823 - MLT1C LTR MaLR 0 467 1 248 320 64 12 chr12 106578691 106578863 -37207592 - L2 LINE L2 -536 2778 2598 283 171 14 14 chr12 106578940 106579010 -37207445 + L1ME LINE L1 5710 5779 -342 3965 236 59 22 chr12 106579202 106579329 -37207126 - L1ME1 LINE L1 0 6166 6045 2008 67 60 7 chr12 106579329 106579611 -37206844 - AluY SINE Alu -14 297 1 3965 236 59 22 chr12 106579611 106581668 -37204787 - L1ME1 LINE L1 -121 6045 3894 6761 63 6 0 chr12 106581679 106583282 -37203173 - L1PA7 LINE L1 -2 6152 4555 27924 104 8 27 chr12 106583382 106588784 -37197671 - L1P3 LINE L1 -1058 5403 11 2640 248 85 12 chr12 106588825 106589916 -37196539 - L1ME1 LINE L1 -2289 3857 2687 1000 137 52 38 chr12 106590105 106590316 -37196139 - L1P3 LINE L1 -6237 224 11 2614 256 86 7 chr12 106590357 106591443 -37195012 - L1M4 LINE L1 -2289 3857 2687 1411 101 0 0 chr12 106591455 106591684 -37194771 + L1PA7 LINE L1 5948 6176 0 2973 143 6 50 chr12 106591690 106592235 -37194220 + Tigger7 DNA MER2_type 2 522 -1965 379 200 88 0 chr12 106592239 106592319 -37194136 + Tigger7 DNA MER2_type 2501 2587 0 6279 173 11 1 chr12 106592369 106593588 -37192867 + L1MA2 LINE L1 3261 4492 -1654 261 25 0 0 chr12 106593952 106593992 -37192463 + L1PA6 LINE L1 6115 6154 0 1785 169 4 4 chr12 106594399 106594678 -37191777 + AluSx SINE Alu 18 296 -16 22 35 0 0 chr12 106596942 106596971 -37189484 + AT_rich Low_complexity Low_complexity 1 29 0 6345 132 13 20 chr12 106596985 106598830 -37187625 + L1MA2 LINE L1 4477 6305 0 22 0 0 0 chr12 106598829 106598851 -37187604 + AT_rich Low_complexity Low_complexity 1 22 0 * 449 308 135 8 chr12 106599155 106599415 -37187040 - MLT1J2 LTR MaLR -157 293 1 6809 53 22 0 chr12 106599457 106600549 -37185906 + L1PA6 LINE L1 5026 6136 -18 2269 60 21 0 chr12 106600549 106600593 -37185862 + L1P LINE L1 5026 6168 -743 189 0 0 0 chr12 106600871 106600892 -37185563 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 513 311 87 36 chr12 106601175 106601613 -37184842 - MLT1J LTR MaLR -51 460 1 331 354 69 64 chr12 106601868 106602289 -37184166 - L2 LINE L2 -1 3271 2849 307 202 18 0 chr12 106602634 106602743 -37183712 + (TA)n Simple_repeat Simple_repeat 1 111 0 1992 178 11 3 chr12 106603116 106603475 -37182980 + MLT1A1 LTR MaLR 4 365 0 3042 160 58 0 chr12 106603920 106604450 -37182005 + MER68 LTR ERV1 2 562 0 1033 214 28 25 chr12 106604592 106604877 -37181578 - MER46C DNA MER2_type -52 286 1 340 314 33 26 chr12 106604877 106605030 -37181425 - MIR SINE MIR -108 154 1 273 98 0 0 chr12 106605320 106605361 -37181094 + (TG)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr12 106605823 106605849 -37180606 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr12 106607352 106607375 -37179080 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 459 156 0 0 chr12 106607486 106607563 -37178892 + AluJ/FLAM SINE Alu 1 77 -235 253 86 0 0 chr12 106607576 106607611 -37178844 - MLT1B LTR MaLR -145 245 211 1646 126 0 0 chr12 106607611 106607833 -37178622 + AluSg/x SINE Alu 68 289 -23 350 100 17 0 chr12 106607865 106607925 -37178530 + (TA)n Simple_repeat Simple_repeat 1 61 0 268 194 28 0 chr12 106607952 106608011 -37178444 + (TA)n Simple_repeat Simple_repeat 2 65 -10 240 86 0 0 chr12 106608011 106608046 -37178409 + (TG)n Simple_repeat Simple_repeat 2 36 0 268 194 28 0 chr12 106608046 106608058 -37178397 + (TA)n Simple_repeat Simple_repeat 65 75 0 208 286 179 0 chr12 106608220 106608304 -37178151 + MIR3 SINE MIR 89 187 -21 2305 113 10 79 chr12 106608627 106609043 -37177412 - MLT1B LTR MaLR -3 387 1 2412 99 16 16 chr12 106609049 106609412 -37177043 + THE1B LTR MaLR 2 364 0 447 262 42 65 chr12 106610895 106611063 -37175392 - MIR SINE MIR -40 222 59 277 265 126 39 chr12 106611148 106611378 -37175077 + MER112 DNA MER1_type 2 251 -9 274 292 131 8 chr12 106611596 106611726 -37174729 - MIR SINE MIR -114 148 3 * 290 266 57 105 chr12 106611726 106611926 -37174529 - MIR SINE MIR -43 219 30 242 368 45 15 chr12 106612679 106612812 -37173643 + MER5A DNA MER1_type 3 139 -50 2831 111 16 91 chr12 106613220 106613780 -37172675 + L1PB3 LINE L1 5634 6151 -3 8436 61 7 1 chr12 106614043 106615212 -37171243 + L1P LINE L1 1264 2439 -3707 1934 139 4 0 chr12 106615215 106615488 -37170967 + AluSc SINE Alu 1 274 -35 25894 27 1 5 chr12 106615598 106619376 -37167079 + L1PA4 LINE L1 2132 5891 -264 989 175 43 33 chr12 106619503 106619714 -37166741 + MLT1J2 LTR MaLR 3 215 -235 767 93 29 14 chr12 106619742 106619882 -37166573 + CT-rich Low_complexity Low_complexity 2 143 0 1672 194 3 28 chr12 106619889 106620208 -37166247 - AluJo SINE Alu -1 311 1 1398 208 6 24 chr12 106620208 106620540 -37165915 - MER4D LTR ERV1 -26 877 552 1475 194 17 7 chr12 106620568 106620862 -37165593 - MER49 LTR ERV1 -626 297 1 2437 84 7 0 chr12 106620924 106621234 -37165221 + AluSx SINE Alu 1 312 0 213 121 0 0 chr12 106621238 106621271 -37165184 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 268 212 0 15 chr12 106621354 106621420 -37165035 + MLT1J1 LTR MaLR 358 422 -24 384 185 8 59 chr12 106621821 106621940 -37164515 - LTR33A LTR ERVL 0 523 411 575 239 37 0 chr12 106622128 106622262 -37164193 + MLT1G LTR MaLR 9 147 -443 32 0 0 0 chr12 106622262 106622294 -37164161 + AT_rich Low_complexity Low_complexity 1 32 0 845 67 8 0 chr12 106622294 106622413 -37164042 - L1PA8 LINE L1 -1 6171 6052 3221 37 5 5 chr12 106622413 106622816 -37163639 - L1PA4 LINE L1 -1 6154 5748 1914 152 24 7 chr12 106622868 106623164 -37163291 + AluSx SINE Alu 1 301 -11 312 305 84 0 chr12 106623205 106623372 -37163083 + L1ME3 LINE L1 5767 5947 -215 195 311 0 0 chr12 106623560 106623605 -37162850 + L2 LINE L2 3220 3264 -8 732 218 95 25 chr12 106623640 106623883 -37162572 - MLT1K LTR MaLR -3 585 326 10201 102 46 8 chr12 106624892 106627086 -37159369 - L1P2 LINE L1 -343 5811 3529 324 285 8 57 chr12 106627573 106627696 -37158759 - MIR SINE MIR -115 147 31 23 54 0 0 chr12 106629562 106629599 -37156856 + AT_rich Low_complexity Low_complexity 1 37 0 962 209 79 55 chr12 106631199 106631462 -37154993 + MIR SINE MIR 2 262 0 21 0 0 0 chr12 106631582 106631603 -37154852 + AT_rich Low_complexity Low_complexity 1 21 0 3503 222 62 24 chr12 106631644 106632146 -37154309 - L1MC4a LINE L1 -6 7802 7320 2310 116 0 0 chr12 106632146 106632456 -37153999 + AluSg SINE Alu 1 310 0 3503 222 62 24 chr12 106632456 106633073 -37153382 - L1MC4a LINE L1 -488 7320 6641 22 35 0 0 chr12 106633527 106633556 -37152899 + AT_rich Low_complexity Low_complexity 1 29 0 248 298 149 0 chr12 106633847 106633941 -37152514 + L2 LINE L2 3156 3263 -9 302 330 36 0 chr12 106633997 106634109 -37152346 - L2 LINE L2 -12 3260 3145 24 0 0 0 chr12 106634694 106634718 -37151737 + AT_rich Low_complexity Low_complexity 1 24 0 196 320 0 0 chr12 106635018 106635068 -37151387 + L2 LINE L2 3264 3313 0 312 278 90 28 chr12 106635843 106635987 -37150468 - MIR SINE MIR -47 215 63 21 0 0 0 chr12 106637359 106637380 -37149075 + AT_rich Low_complexity Low_complexity 1 21 0 195 239 0 0 chr12 106637959 106638005 -37148450 - L2 LINE L2 0 3313 3268 234 264 66 38 chr12 106638019 106638125 -37148330 - MIR SINE MIR 0 262 154 1072 161 0 6 chr12 106638152 106638314 -37148141 + AluJb SINE Alu 139 299 -13 185 364 108 28 chr12 106638928 106639104 -37147351 - L2 LINE L2 -229 3043 2854 429 336 0 0 chr12 106639740 106639862 -37146593 + MER5B DNA MER1_type 1 122 -56 340 204 243 10 chr12 106640217 106640320 -37146135 - MIR SINE MIR -13 249 123 696 207 48 7 chr12 106640419 106640564 -37145891 + FRAM SINE Alu 13 163 -13 192 286 18 0 chr12 106640655 106640711 -37145744 - MIR3 SINE MIR -32 176 120 3408 35 0 0 chr12 106641562 106641968 -37144487 - L1PA5 LINE L1 -1 6153 5748 1914 152 24 7 chr12 106642020 106642316 -37144139 + AluSx SINE Alu 1 301 -11 312 305 84 0 chr12 106642357 106642524 -37143931 + L1ME3 LINE L1 5767 5947 -215 195 311 0 0 chr12 106642712 106642757 -37143698 + L2 LINE L2 3220 3264 -8 724 236 86 30 chr12 106642792 106643059 -37143396 - MLT1K LTR MaLR -3 585 304 5589 119 11 0 chr12 106643909 106644588 -37141867 - L1PA16 LINE L1 -1 6165 5472 2217 113 10 0 chr12 106644588 106644889 -37141566 - AluSg1 SINE Alu -5 304 1 5589 119 11 0 chr12 106644889 106645505 -37140950 - L1PA16 LINE L1 -694 5472 4865 789 149 0 29 chr12 106646132 106646151 -37140304 - L1P4 LINE L1 -672 5494 5476 3680 91 6 0 chr12 106646151 106646655 -37139800 - L1PA11 LINE L1 -16 6158 5652 789 149 0 29 chr12 106646655 106646810 -37139645 - L1P4 LINE L1 -690 5476 5325 9881 133 47 10 chr12 106646815 106648843 -37137612 - L1PA11 LINE L1 -529 5639 3529 352 266 229 42 chr12 106649252 106649444 -37137011 - MIR SINE MIR -4 258 31 242 321 0 9 chr12 106651207 106651316 -37135139 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr12 106651431 106651452 -37135003 + AT_rich Low_complexity Low_complexity 1 21 0 2944 102 0 29 chr12 106651829 106651906 -37134549 + L1PB2 LINE L1 5710 5788 -363 2477 77 0 3 chr12 106651906 106652218 -37134237 + AluY SINE Alu 1 311 0 2944 102 0 29 chr12 106652218 106652593 -37133862 + L1PB2 LINE L1 5788 6149 -2 1969 122 15 0 chr12 106652687 106652958 -37133497 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr12 106652962 106652987 -37133468 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2484 112 22 0 chr12 106653304 106653660 -37132795 - THE1B LTR MaLR 0 364 1 2644 40 0 0 chr12 106653741 106654042 -37132413 - AluY SINE Alu -10 301 1 22 56 0 0 chr12 106654300 106654336 -37132119 + AT_rich Low_complexity Low_complexity 1 36 0 477 0 0 0 chr12 106654617 106654670 -37131785 + (TG)n Simple_repeat Simple_repeat 1 53 0 2081 87 0 21 chr12 106654670 106654956 -37131499 - AluSq SINE Alu -33 280 1 414 276 159 0 chr12 106655241 106655404 -37131051 - MER5A DNA MER1_type 0 189 1 180 77 0 0 chr12 106655644 106655670 -37130785 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 2688 38 0 0 chr12 106655670 106655989 -37130466 - L1PA4 LINE L1 -16 6139 5821 1165 272 99 7 chr12 106656236 106656648 -37129807 + LTR16A LTR ERVL 1 450 0 341 181 139 0 chr12 106656700 106656772 -37129683 - L2 LINE L2 0 3313 3232 2960 143 11 25 chr12 106658055 106658678 -37127777 + L1MB8 LINE L1 5203 5801 -383 1536 164 0 124 chr12 106658678 106659074 -37127381 - MER7A DNA MER2_type 0 346 2 1942 147 33 19 chr12 106659074 106659441 -37127014 + L1MB8 LINE L1 5802 6173 -5 306 330 25 8 chr12 106659612 106659730 -37126725 + L1MEd LINE L1 51 170 -5949 377 296 68 61 chr12 106660042 106660908 -37125547 + L1MEd LINE L1 494 1467 -1023 1129 203 8 56 chr12 106660908 106661159 -37125296 - MER8 DNA MER2_type 0 239 1 377 296 68 61 chr12 106661159 106661345 -37125110 + L1MEd LINE L1 1467 1650 -840 232 62 0 0 chr12 106661393 106661425 -37125030 - HSMAR1 DNA Mariner -1255 32 1 207 217 0 0 chr12 106661521 106661581 -37124874 + GA-rich Low_complexity Low_complexity 3 62 0 22 0 0 0 chr12 106661635 106661657 -37124798 + AT_rich Low_complexity Low_complexity 1 22 0 299 352 152 29 chr12 106661752 106662333 -37124122 + L2 LINE L2 2412 3055 -217 2203 120 120 26 chr12 106662559 106662950 -37123505 - MSTA LTR MaLR 0 428 1 1145 238 47 26 chr12 106662973 106663317 -37123138 + MER87 LTR ERV1 168 518 -23 833 285 162 19 chr12 106663620 106664051 -37122404 - L2 LINE L2 -16 3297 2805 220 374 18 49 chr12 106664374 106664537 -37121918 - L2 LINE L2 -239 3033 2876 977 207 5 5 chr12 106664692 106664880 -37121575 + MER5A DNA MER1_type 1 188 -1 3309 106 21 27 chr12 106665679 106665845 -37120610 + L1PB3 LINE L1 5634 5799 -355 231 114 0 0 chr12 106665845 106665880 -37120575 + (TA)n Simple_repeat Simple_repeat 2 36 0 3309 106 21 27 chr12 106665880 106666234 -37120221 + L1PB3 LINE L1 5799 6151 -3 804 184 106 48 chr12 106667086 106667293 -37119162 - MER20 DNA MER1_type 0 219 1 2057 84 0 0 chr12 106667438 106667687 -37118768 - AluSg SINE Alu -24 286 38 1637 121 0 18 chr12 106668598 106668870 -37117585 + HERVH LTR ERV1 1878 2144 -5569 41011 32 21 0 chr12 106668880 106674901 -37111554 + L1HS LINE L1 1 6151 0 19227 30 1 0 chr12 106674901 106677984 -37108471 + L1PA2 LINE L1 3072 6155 0 254 28 0 28 chr12 106678048 106678084 -37108371 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1014 187 16 11 chr12 106678092 106678274 -37108181 - AluJb SINE Alu -43 269 87 1685 185 6 44 chr12 106678322 106678641 -37107814 - AluJo SINE Alu -3 309 3 21 0 0 0 chr12 106678643 106678664 -37107791 + AT_rich Low_complexity Low_complexity 1 21 0 297 225 88 12 chr12 106680493 106680653 -37105802 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 441 0 0 0 chr12 106681396 106681445 -37105010 + (TC)n Simple_repeat Simple_repeat 2 50 0 362 21 0 21 chr12 106681444 106681492 -37104963 + (TA)n Simple_repeat Simple_repeat 1 47 0 * 539 335 5 16 chr12 106681868 106682056 -37104399 + MER5A DNA MER1_type 3 188 -1 298 302 138 0 chr12 106682129 106682245 -37104210 - L2 LINE L2 -4 3309 3178 2117 109 0 11 chr12 106682743 106683051 -37103404 + AluSx SINE Alu 1 305 0 414 224 157 0 chr12 106683448 106683582 -37102873 + L2 LINE L2 2546 2700 -614 622 198 22 71 chr12 106683583 106683851 -37102604 + HAL1 LINE L1 1105 1359 -1148 732 305 48 25 chr12 106683869 106684262 -37102193 + HAL1 LINE L1 1459 1860 -647 562 267 22 37 chr12 106684480 106684678 -37101777 - MIR SINE MIR -50 212 22 2767 84 33 2 chr12 106685210 106685661 -37100794 + L1PA16 LINE L1 5613 6157 -9 479 284 98 51 chr12 106685673 106686112 -37100343 - L2 LINE L2 -78 3235 2686 1809 132 75 0 chr12 106686244 106686525 -37099930 + AluSx SINE Alu 1 302 -10 1116 286 59 20 chr12 106686578 106687306 -37099149 + L1ME LINE L1 4748 5505 -659 236 291 46 120 chr12 106687873 106688048 -37098407 + L2 LINE L2 3111 3272 0 183 156 0 0 chr12 106689711 106689743 -37096712 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 410 358 15 95 chr12 106692612 106692950 -37093505 - L2 LINE L2 -31 3241 2931 1976 199 81 41 chr12 106693151 106693710 -37092745 + L1MDa LINE L1 19 599 -5941 2690 154 105 4 chr12 106693712 106694246 -37092209 - LTR69 LTR ERVL 0 588 1 346 175 75 0 chr12 106695501 106695581 -37090874 + L1MD1 LINE L1 123 208 -6332 2394 141 52 5 chr12 106697056 106697579 -37088876 - LTR69 LTR ERVL -1 587 1 5896 205 97 39 chr12 106697579 106698443 -37088012 + L1MD1 LINE L1 847 1659 -4977 216 0 0 0 chr12 106698443 106698467 -37087988 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5896 205 97 39 chr12 106698467 106700282 -37086173 + L1MD1 LINE L1 1659 3367 -3269 381 93 0 0 chr12 106700282 106700336 -37086119 + (CA)n Simple_repeat Simple_repeat 2 55 0 5896 205 97 39 chr12 106700336 106702725 -37083730 + L1MD1 LINE L1 3367 6636 0 964 108 0 0 chr12 106703562 106703691 -37082764 - FLAM_C SINE Alu -4 129 1 255 339 134 27 chr12 106704362 106704548 -37081907 - MIR SINE MIR -53 209 4 182 65 65 0 chr12 106705122 106705153 -37081302 + (CTAAT)n Simple_repeat Simple_repeat 4 36 0 2626 71 0 0 chr12 106705874 106706185 -37080270 - AluY SINE Alu 0 311 1 530 272 27 0 chr12 106707305 106707452 -37079003 + MIR SINE MIR 112 262 0 22 0 0 0 chr12 106707700 106707722 -37078733 + AT_rich Low_complexity Low_complexity 1 22 0 2081 126 10 0 chr12 106708407 106708708 -37077747 - AluSx SINE Alu -1 311 8 180 0 0 0 chr12 106708918 106708938 -37077517 + (T)n Simple_repeat Simple_repeat 1 20 0 795 276 66 8 chr12 106709394 106709637 -37076818 + MIR SINE MIR 6 262 0 586 199 167 6 chr12 106709640 106709796 -37076659 + MIR SINE MIR 72 252 -10 409 290 121 4 chr12 106710896 106711127 -37075328 + MIR SINE MIR 2 259 -3 1013 241 73 36 chr12 106711257 106711560 -37074895 + LTR16A LTR ERVL 128 441 -9 246 366 85 0 chr12 106712451 106712604 -37073851 + L2 LINE L2 2845 3010 -262 375 336 0 15 chr12 106712729 106712863 -37073592 - MIR SINE MIR -82 180 49 27 29 0 0 chr12 106713556 106713590 -37072865 + AT_rich Low_complexity Low_complexity 1 34 0 2321 101 0 7 chr12 106715800 106716107 -37070348 - AluSx SINE Alu -7 305 1 234 355 130 22 chr12 106716748 106716886 -37069569 - L2 LINE L2 -216 3056 2904 1773 139 10 43 chr12 106717304 106717605 -37068850 - AluJo SINE Alu -16 296 6 2184 111 10 3 chr12 106718529 106718827 -37067628 - AluSc SINE Alu -9 300 1 1455 59 0 39 chr12 106718847 106719051 -37067404 - L1PA13 LINE L1 -19 6144 5949 249 297 71 16 chr12 106719290 106719472 -37066983 + L1MC4a LINE L1 6075 6266 -1542 660 239 11 57 chr12 106719630 106719806 -37066649 + MER5B DNA MER1_type 4 171 -7 1692 181 53 94 chr12 106719807 106720508 -37065947 + L1MC5 LINE L1 6877 7523 -438 * 3266 232 133 8 chr12 106720501 106721754 -37064701 + L1ME2 LINE L1 2463 3871 -2275 846 244 92 0 chr12 106721752 106722068 -37064387 + L1ME2 LINE L1 4137 4481 -1665 * 748 140 0 0 chr12 106722103 106722210 -37064245 - U6 snRNA snRNA 0 107 1 288 98 82 0 chr12 106722271 106722332 -37064123 - L1M LINE L1 -801 5363 5298 1810 208 24 126 chr12 106722399 106723235 -37063220 + L1ME2 LINE L1 5405 6155 -9 553 212 158 30 chr12 106723322 106723695 -37062760 + L1MC5 LINE L1 7511 7931 -30 30 27 0 0 chr12 106725370 106725407 -37061048 + AT_rich Low_complexity Low_complexity 1 37 0 183 243 27 0 chr12 106725627 106725664 -37060791 - L2 LINE L2 -61 3211 3174 2224 120 3 0 chr12 106726180 106726481 -37059974 - AluSx SINE Alu -10 302 1 796 229 34 34 chr12 106727542 106727778 -37058677 - L1ME1 LINE L1 -19 6147 5912 182 107 0 0 chr12 106728293 106728321 -37058134 - MIR3 SINE MIR -6 202 175 279 227 13 13 chr12 106728502 106728577 -37057878 - MIR SINE MIR -79 183 109 389 235 67 54 chr12 106730156 106730305 -37056150 + MIR SINE MIR 98 248 -14 268 210 16 0 chr12 106730525 106730587 -37055868 - Charlie8 DNA MER1_type -1006 1411 1349 * 311 258 16 47 chr12 106730585 106730713 -37055742 - Charlie8 DNA MER1_type -1926 491 368 751 227 92 10 chr12 106731599 106731806 -37054649 - MIR SINE MIR 0 262 39 180 281 16 31 chr12 106732006 106732070 -37054385 - MIR3 SINE MIR -8 200 138 299 296 137 52 chr12 106733424 106733657 -37052798 - MIR SINE MIR 0 262 10 212 135 67 11 chr12 106734133 106734222 -37052233 + (TA)n Simple_repeat Simple_repeat 1 94 0 321 281 94 0 chr12 106734475 106734603 -37051852 + MIR SINE MIR 67 206 -56 479 311 39 36 chr12 106734833 106735196 -37051259 - HAL1b LINE L1 -732 616 253 2268 117 0 3 chr12 106735309 106735617 -37050838 - AluSc SINE Alu -2 307 1 870 108 19 19 chr12 106736497 106736747 -37049708 + THE1C LTR MaLR 1 364 0 11403 102 11 1 chr12 106736747 106738311 -37048144 + THE1B-int LTR MaLR 1 1580 0 2209 138 30 25 chr12 106738311 106738672 -37047783 + THE1B LTR MaLR 1 363 -1 1591 269 44 26 chr12 106738825 106739326 -37047129 + L2 LINE L2 2804 3313 0 944 252 31 28 chr12 106739531 106739987 -37046468 - MLT1J LTR MaLR -2 509 1 2209 110 0 0 chr12 106740422 106740713 -37045742 - AluSx SINE Alu -21 291 1 4106 178 41 13 chr12 106740722 106741674 -37044781 - L1MB3 LINE L1 -2 6181 5207 474 327 13 0 chr12 106742049 106742208 -37044247 + MIR SINE MIR 102 262 0 449 380 150 4 chr12 106742224 106742458 -37043997 + L2 LINE L2 3004 3271 -1 1370 233 79 79 chr12 106742758 106743194 -37043261 + LTR38 LTR ERV1 1 385 -171 1920 144 3 34 chr12 106743194 106743514 -37042941 - AluJb SINE Alu -2 310 1 1370 233 79 79 chr12 106743514 106743687 -37042768 + LTR38 LTR ERV1 384 556 0 230 214 0 86 chr12 106743892 106743962 -37042493 - MER81 DNA DNA -1 113 50 414 254 59 25 chr12 106744385 106744503 -37041952 + MIR SINE MIR 19 140 -68 2014 128 10 17 chr12 106744782 106745080 -37041375 - AluSx SINE Alu -14 298 3 418 234 106 28 chr12 106745231 106745372 -37041083 - MER63A DNA MER1_type 0 210 59 252 224 35 0 chr12 106745809 106745867 -37040588 + MIR SINE MIR 61 120 -142 242 162 15 88 chr12 106746003 106746071 -37040384 + MER81 DNA DNA 50 112 -2 1782 165 3 7 chr12 106746211 106746496 -37039959 - AluJb SINE Alu -28 284 1 388 222 70 76 chr12 106746553 106746724 -37039731 + MER69A DNA AcHobo 8 177 0 2157 118 0 19 chr12 106747497 106747811 -37038644 + AluY SINE Alu 1 308 -3 608 238 127 24 chr12 106747931 106748153 -37038302 + MIR SINE MIR 10 252 -10 2297 95 0 3 chr12 106748327 106748622 -37037833 - AluSx SINE Alu -17 295 2 28 48 0 0 chr12 106748734 106748776 -37037679 + AT_rich Low_complexity Low_complexity 1 42 0 548 294 7 14 chr12 106749647 106749793 -37036662 + MIR SINE MIR 2 146 -116 1513 117 89 104 chr12 106749799 106750115 -37036340 + AluY SINE Alu 1 311 0 271 203 59 102 chr12 106750262 106750380 -37036075 + MIR SINE MIR 147 259 -3 1919 137 3 3 chr12 106750441 106750726 -37035729 - AluSx SINE Alu -16 296 12 233 194 14 97 chr12 106750731 106750803 -37035652 - L2 LINE L2 0 3272 3207 264 128 0 0 chr12 106751407 106751446 -37035009 - MIR SINE MIR -6 256 218 221 232 0 18 chr12 106751439 106751495 -37034960 + MIR SINE MIR 205 259 -3 * 2360 87 0 3 chr12 106751888 106752187 -37034268 - AluSq SINE Alu -15 298 1 423 264 60 89 chr12 106752497 106752960 -37033495 + MER113 DNA MER1_type? 1 450 -71 21 36 0 0 chr12 106754256 106754284 -37032171 + AT_rich Low_complexity Low_complexity 1 28 0 186 259 0 17 chr12 106754311 106754369 -37032086 - MIR SINE MIR -42 220 164 * 226 228 185 43 chr12 106754366 106754458 -37031997 - MIR SINE MIR -19 243 139 1710 156 61 51 chr12 106754465 106754875 -37031580 - LTR52 LTR ERVL -7 414 1 1295 208 63 113 chr12 106754993 106755016 -37031439 - MLT2B1 LTR ERVL -21 393 370 441 0 0 0 chr12 106755016 106755065 -37031390 + (CA)n Simple_repeat Simple_repeat 2 50 0 1295 208 63 113 chr12 106755065 106755455 -37031000 - MLT2B1 LTR ERVL -44 370 1 328 301 44 0 chr12 106755571 106755684 -37030771 + MIR SINE MIR 7 124 -138 228 263 163 12 chr12 106755690 106755770 -37030685 - L3 LINE CR1 -120 1457 1366 839 230 157 37 chr12 106756124 106756424 -37030031 - MLT1K LTR MaLR -250 338 3 1535 198 50 20 chr12 106757159 106757502 -37028953 + LTR42 LTR ERVL 8 360 -135 239 191 92 7 chr12 106757547 106757688 -37028767 + (TA)n Simple_repeat Simple_repeat 2 154 0 2420 79 0 0 chr12 106757728 106758031 -37028424 - AluY SINE Alu -8 303 1 2114 233 65 26 chr12 106758448 106759019 -37027436 + MLT1E LTR MaLR 1 593 0 433 214 29 0 chr12 106759149 106759252 -37027203 - MLT1K LTR MaLR 0 588 483 295 282 61 80 chr12 106759372 106759585 -37026870 - MLT1K LTR MaLR -378 210 2 1611 192 102 32 chr12 106759607 106760018 -37026437 + LTR47B LTR ERVL 4 443 0 278 215 178 0 chr12 106760127 106760234 -37026221 - L1ME3A LINE L1 -6 6164 6039 3856 159 66 69 chr12 106760234 106761257 -37025198 - MER52C LTR ERV1 -1 1277 9 2371 233 56 30 chr12 106761259 106762195 -37024260 - L1ME3A LINE L1 -125 6045 5088 917 174 39 0 chr12 106763122 106763277 -37023178 + FRAM SINE Alu 2 162 -4 493 260 112 5 chr12 106763284 106763480 -37022975 + MARNA DNA Mariner 133 349 -237 424 99 0 14 chr12 106763593 106763664 -37022791 - MER53 DNA DNA -18 171 102 261 71 48 0 chr12 106763671 106763713 -37022742 + MER53 DNA DNA 146 189 0 268 315 115 8 chr12 106763722 106763852 -37022603 - MARNA DNA Mariner -400 186 43 246 57 57 19 chr12 106764522 106764567 -37021888 + (TTTA)n Simple_repeat Simple_repeat 2 51 -5 1667 36 0 0 chr12 106764567 106764763 -37021692 - L1PA3 LINE L1 -3 6152 5957 246 57 57 19 chr12 106764763 106764770 -37021685 + (TTTA)n Simple_repeat Simple_repeat 51 56 0 507 33 0 0 chr12 106764983 106765044 -37021411 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 774 258 37 76 chr12 106765181 106765697 -37020758 + HAL1 LINE L1 2012 2507 0 994 160 0 13 chr12 106767142 106767298 -37019157 - AluJo SINE Alu -136 176 23 243 0 0 0 chr12 106767304 106767331 -37019124 + (TA)n Simple_repeat Simple_repeat 2 28 0 373 278 0 0 chr12 106767331 106767421 -37019034 - L1MC4 LINE L1 -1339 6703 6614 346 261 0 70 chr12 106767345 106767460 -37018995 + L1MC4 LINE L1 6614 6720 -1322 * 1925 127 27 135 chr12 106767525 106768005 -37018450 + MSTA LTR MaLR 1 428 0 429 247 0 0 chr12 106768892 106768981 -37017474 - MIR SINE MIR -6 256 168 1893 154 3 7 chr12 106769814 106770106 -37016349 - AluSx SINE Alu -21 291 1 237 239 30 63 chr12 106770259 106770380 -37016075 - MIR SINE MIR -61 147 22 21 0 0 0 chr12 106770394 106770415 -37016040 + AT_rich Low_complexity Low_complexity 1 21 0 1491 129 0 40 chr12 106770570 106770822 -37015633 - AluSg/x SINE Alu 0 311 69 183 211 26 0 chr12 106770882 106770920 -37015535 - MIR SINE MIR -13 249 211 727 321 159 8 chr12 106772511 106772894 -37013561 - L2 LINE L2 -410 2904 2464 554 296 96 9 chr12 106772956 106773186 -37013269 - MIR SINE MIR 0 262 13 1305 273 117 17 chr12 106773209 106773678 -37012777 - L2 LINE L2 -860 2454 1939 186 293 158 24 chr12 106773840 106773922 -37012533 - L2 LINE L2 -8 3305 3213 1732 174 14 3 chr12 106773922 106774209 -37012246 - AluJb SINE Alu -16 296 7 257 244 15 15 chr12 106774246 106774377 -37012078 + GA-rich Low_complexity Low_complexity 2 132 0 747 271 37 0 chr12 106774494 106774738 -37011717 + HAL1 LINE L1 1621 1873 -634 958 272 91 52 chr12 106774807 106775366 -37011089 - HAL1 LINE L1 -1910 597 17 264 297 51 0 chr12 106775405 106775523 -37010932 - L1ME3A LINE L1 -51 6119 5996 398 278 56 0 chr12 106775627 106775735 -37010720 - L1ME3A LINE L1 -208 5954 5841 522 288 110 8 chr12 106775776 106776040 -37010415 - L1ME3A LINE L1 -401 5769 5479 253 270 26 69 chr12 106776082 106776271 -37010184 - HAL1 LINE L1 -482 2025 1845 3137 245 66 53 chr12 106776276 106777645 -37008810 - HAL1 LINE L1 -736 1771 386 1978 121 31 97 chr12 106777760 106778150 -37008305 - THE1B LTR MaLR 0 364 1 333 178 45 198 chr12 106778232 106778389 -37008066 - HAL1 LINE L1 -2316 191 59 256 300 44 22 chr12 106779299 106779389 -37007066 - L2 LINE L2 -27 3245 3154 611 163 0 0 chr12 106780626 106780724 -37005731 - FRAM SINE Alu -61 115 18 1445 234 35 7 chr12 106781034 106781469 -37004986 + L1M4 LINE L1 4848 5294 -852 466 156 31 10 chr12 106781723 106781819 -37004636 - FRAM SINE Alu -61 115 18 3778 165 47 5 chr12 106782129 106783221 -37003234 + L1MB3 LINE L1 4848 5975 -208 334 221 0 13 chr12 106784775 106784852 -37001603 - MER3 DNA MER1_type -124 85 10 294 288 126 18 chr12 106784973 106785084 -37001371 + MIR3 SINE MIR 86 208 0 2303 113 0 0 chr12 106785089 106785398 -37001057 - AluSc SINE Alu 0 309 1 473 290 80 129 chr12 106785622 106786637 -36999818 - L2 LINE L2 -181 3091 2129 840 257 44 24 chr12 106786696 106786945 -36999510 - MLT1H LTR MaLR -239 310 57 21 0 0 0 chr12 106787095 106787116 -36999339 + AT_rich Low_complexity Low_complexity 1 21 0 664 198 17 0 chr12 106787127 106787243 -36999212 - FLAM_C SINE Alu -15 118 1 23 33 0 0 chr12 106787281 106787311 -36999144 + AT_rich Low_complexity Low_complexity 1 30 0 3067 134 18 4 chr12 106787485 106787979 -36998476 - L1PA16 LINE L1 -3 6163 5663 203 143 0 24 chr12 106788011 106788053 -36998402 + (CATA)n Simple_repeat Simple_repeat 3 43 0 255 255 37 28 chr12 106788359 106788517 -36997938 - L1MC/D LINE L1 -302 5819 5682 246 193 0 70 chr12 106790963 106791020 -36995435 - L2 LINE L2 0 3313 3261 340 328 98 16 chr12 106791142 106791264 -36995191 - L2 LINE L2 0 3313 3182 336 264 36 36 chr12 106791297 106791407 -36995048 - L2 LINE L2 -432 2882 2773 292 301 54 0 chr12 106791603 106791696 -36994759 - L2 LINE L2 -6 3266 3169 611 213 15 15 chr12 106791763 106791899 -36994556 + MIR SINE MIR 78 213 -49 2125 115 0 0 chr12 106792490 106792769 -36993686 + AluSx SINE Alu 1 279 -33 240 35 0 0 chr12 106792771 106792800 -36993655 + (CA)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chr12 106792800 106792825 -36993630 + (TAA)n Simple_repeat Simple_repeat 1 25 0 29 70 0 0 chr12 106793181 106793238 -36993217 + AT_rich Low_complexity Low_complexity 1 57 0 855 238 54 9 chr12 106794486 106794670 -36991785 + MIR SINE MIR 29 226 -36 2171 80 59 0 chr12 106794670 106794958 -36991497 + AluSp SINE Alu 1 305 -8 855 238 54 9 chr12 106794958 106794996 -36991459 + MIR SINE MIR 226 261 -1 278 252 64 110 chr12 106795503 106795721 -36990734 - L2 LINE L2 -4 3309 3102 219 333 40 40 chr12 106795926 106796052 -36990403 - L2 LINE L2 -202 3070 2945 9045 40 7 1 chr12 106796286 106797501 -36988954 - L1P LINE L1 -2871 3275 2054 723 122 84 0 chr12 106797497 106797628 -36988827 - L1PA8 LINE L1 -104 6068 5927 * 730 209 47 7 chr12 106797640 106797788 -36988667 + MLT1G LTR MaLR 134 287 -303 * 837 181 191 18 chr12 106797787 106798069 -36988386 + MLT1D LTR MaLR 175 505 0 227 234 21 0 chr12 106798070 106798117 -36988338 + L2 LINE L2 3224 3271 -1 509 220 254 6 chr12 106798316 106798489 -36987966 - MIR SINE MIR -1 261 46 2371 98 3 0 chr12 106798490 106798797 -36987658 + AluSp SINE Alu 1 308 -5 405 294 35 14 chr12 106798903 106799046 -36987409 + MIR3 SINE MIR 35 180 -28 1309 231 113 31 chr12 106799243 106799633 -36986822 + MLT1H LTR MaLR 1 422 -127 352 232 0 0 chr12 106799837 106799919 -36986536 - MLT1K LTR MaLR -21 567 486 272 301 114 31 chr12 106799986 106800179 -36986276 - MLT1J LTR MaLR -163 283 75 687 229 83 10 chr12 106800324 106800516 -36985939 + L2 LINE L2 3108 3313 0 3682 159 80 11 chr12 106800737 106801722 -36984733 - L1MC2 LINE L1 0 6344 5171 251 286 48 0 chr12 106801979 106802042 -36984413 - MIR SINE MIR -114 94 29 967 236 107 41 chr12 106802200 106802564 -36983891 - MLT1K LTR MaLR -17 571 184 2324 118 6 38 chr12 106802669 106803016 -36983439 + MER1B DNA MER1_type 2 337 0 2063 134 7 0 chr12 106803068 106803367 -36983088 - AluSx SINE Alu -11 301 1 215 229 344 10 chr12 106803430 106803526 -36982929 + MIR SINE MIR 19 146 -62 886 154 13 13 chr12 106803534 106803690 -36982765 + L1 LINE L1 4698 4853 -1293 1100 147 11 6 chr12 106803699 106803876 -36982579 - AluSg/x SINE Alu -13 299 122 2263 83 3 7 chr12 106804192 106804493 -36981962 - AluSx SINE Alu -12 300 1 221 240 213 13 chr12 106804535 106804610 -36981845 - MIR SINE MIR -168 94 5 35 0 0 0 chr12 106804758 106804793 -36981662 + AT_rich Low_complexity Low_complexity 1 35 0 305 226 0 0 chr12 106804808 106804870 -36981585 - L2 LINE L2 0 3313 3252 1186 171 52 9 chr12 106804919 106805009 -36981446 - AluJo SINE Alu -90 222 137 369 0 0 0 chr12 106805009 106805050 -36981405 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1186 171 52 9 chr12 106805050 106805170 -36981285 - AluJo SINE Alu -175 137 3 301 278 35 52 chr12 106805172 106805287 -36981168 - L2 LINE L2 -965 2349 2237 200 378 52 0 chr12 106805407 106805542 -36980913 - L2 LINE L2 -1372 1942 1801 22 35 0 0 chr12 106805627 106805656 -36980799 + AT_rich Low_complexity Low_complexity 1 29 0 663 261 92 23 chr12 106806088 106806306 -36980149 + MIR SINE MIR 2 234 -28 366 250 25 0 chr12 106806302 106806382 -36980073 + MIR SINE MIR 78 159 -103 * 190 333 141 0 chr12 106806482 106806581 -36979874 + L2 LINE L2 3200 3312 -1 186 279 49 0 chr12 106806627 106806688 -36979767 + L3 LINE CR1 1503 1566 -11 1800 171 10 3 chr12 106806995 106807288 -36979167 + AluJb SINE Alu 1 295 -17 185 174 0 22 chr12 106807290 106807336 -36979119 + GA-rich Low_complexity Low_complexity 4 48 0 462 262 11 75 chr12 106807339 106807526 -36978929 - L2 LINE L2 -161 3111 2937 195 167 0 0 chr12 106807681 106807711 -36978744 + MIR SINE MIR 116 145 -63 317 53 0 0 chr12 106807819 106807857 -36978598 + U2 snRNA snRNA 1 38 -150 604 105 48 38 chr12 106808030 106808135 -36978320 - FLAM_A SINE Alu -5 137 32 450 262 50 14 chr12 106808224 106808365 -36978090 + MIR SINE MIR 19 164 -98 382 294 8 24 chr12 106808628 106808754 -36977701 - FRAM SINE Alu 0 166 43 443 248 30 45 chr12 106808922 106809055 -36977400 + Charlie8 DNA MER1_type 104 234 -2183 2168 103 0 0 chr12 106809299 106809609 -36976846 - AluSx SINE Alu 0 312 3 360 0 0 0 chr12 106809693 106809733 -36976722 + (CA)n Simple_repeat Simple_repeat 2 41 0 360 253 44 70 chr12 106810147 106810230 -36976225 + MIR SINE MIR 109 188 -74 998 194 21 5 chr12 106810230 106810416 -36976039 + MER5A DNA MER1_type 1 189 0 360 253 44 70 chr12 106810416 106810490 -36975965 + MIR SINE MIR 188 262 0 5381 152 10 2 chr12 106810585 106811449 -36975006 - L1MA4 LINE L1 0 6300 5430 787 90 10 0 chr12 106811499 106811599 -36974856 - FRAM SINE Alu -52 124 24 2680 144 51 12 chr12 106811599 106812178 -36974277 - L1MA4 LINE L1 -743 5403 4846 1025 136 7 7 chr12 106812178 106812325 -36974130 + AluSq/x SINE Alu 1 147 -166 17321 27 1 18 chr12 106812428 106815150 -36971305 + L1PA4 LINE L1 3444 6154 -1 910 67 8 0 chr12 106815150 106815265 -36971190 + L1PA8 LINE L1 6052 6171 -1 32 0 0 0 chr12 106815265 106815297 -36971158 + AT_rich Low_complexity Low_complexity 1 32 0 632 239 37 0 chr12 106815297 106815431 -36971024 - MLT1G LTR MaLR -443 147 9 1792 192 102 32 chr12 106865714 106866125 -36920330 - LTR47B LTR ERVL 0 443 4 345 282 61 80 chr12 106866147 106866360 -36920095 + MLT1K LTR MaLR 2 210 -378 480 214 29 0 chr12 106866480 106866583 -36919872 + MLT1K LTR MaLR 483 588 0 2344 233 65 26 chr12 106866713 106867284 -36919171 - MLT1E LTR MaLR 0 593 1 2431 79 0 0 chr12 106867701 106868004 -36918451 + AluY SINE Alu 1 303 -8 239 191 92 7 chr12 106868044 106868185 -36918270 + (TA)n Simple_repeat Simple_repeat 1 153 0 1674 198 50 20 chr12 106868230 106868573 -36917882 - LTR42 LTR ERVL -135 360 8 2108 107 0 0 chr12 106870097 106870378 -36916077 - AluSx SINE Alu -31 281 1 419 243 9 0 chr12 106870378 106870489 -36915966 - L1MEc LINE L1 -3988 2408 2297 812 229 172 41 chr12 106870611 106870878 -36915577 + MLT1K LTR MaLR 37 338 -250 223 263 163 12 chr12 106871232 106871312 -36915143 + L3 LINE CR1 1366 1457 -120 322 301 44 0 chr12 106871318 106871431 -36915024 - MIR SINE MIR -138 124 7 1416 208 63 113 chr12 106871547 106871937 -36914518 + MLT2B1 LTR ERVL 1 370 -44 459 0 0 0 chr12 106871937 106871988 -36914467 + (TG)n Simple_repeat Simple_repeat 2 52 0 1416 208 63 113 chr12 106871988 106872011 -36914444 + MLT2B1 LTR ERVL 370 393 -21 1883 156 61 51 chr12 106872129 106872539 -36913916 + LTR52 LTR ERVL 1 414 -7 221 228 185 43 chr12 106872546 106872638 -36913817 + MIR SINE MIR 139 243 -19 21 36 0 0 chr12 106872720 106872748 -36913707 + AT_rich Low_complexity Low_complexity 1 28 0 574 256 61 98 chr12 106873967 106874507 -36911948 - MER113 DNA MER1_type? -1 520 1 2366 87 0 3 chr12 106874817 106875116 -36911339 + AluSq SINE Alu 1 298 -15 220 232 0 18 chr12 106875509 106875565 -36910890 - MIR SINE MIR -3 259 205 * 264 128 0 0 chr12 106875558 106875597 -36910858 + MIR SINE MIR 218 256 -6 231 194 14 97 chr12 106876201 106876273 -36910182 + L2 LINE L2 3207 3272 0 1909 137 3 3 chr12 106876278 106876563 -36909892 + AluSx SINE Alu 12 296 -16 261 203 59 102 chr12 106876624 106876742 -36909713 - MIR SINE MIR -3 259 147 1501 120 89 104 chr12 106876889 106877205 -36909250 - AluY SINE Alu 0 311 1 542 294 7 14 chr12 106877211 106877357 -36909098 - MIR SINE MIR -116 146 2 236 258 163 52 chr12 106878200 106878382 -36908073 + L1ME4a LINE L1 5861 6077 -44 2220 95 0 3 chr12 106878382 106878695 -36907760 + AluSx SINE Alu 2 313 0 236 258 163 52 chr12 106878695 106878744 -36907711 + L1ME4a LINE L1 6077 6119 -2 598 238 127 24 chr12 106878851 106879073 -36907382 - MIR SINE MIR -10 252 10 2154 118 0 19 chr12 106879193 106879507 -36906948 - AluY SINE Alu -3 308 1 453 222 70 76 chr12 106880280 106880451 -36906004 - MER69A DNA AcHobo 0 177 8 1771 165 3 7 chr12 106880508 106880793 -36905662 + AluJb SINE Alu 1 284 -28 265 162 15 88 chr12 106880933 106881001 -36905454 - MER81 DNA DNA -2 112 50 249 208 38 0 chr12 106881142 106881195 -36905260 - MIR SINE MIR -147 115 61 472 234 106 28 chr12 106881632 106881773 -36904682 + MER63A DNA MER1_type 59 210 0 2005 128 10 17 chr12 106881924 106882222 -36904233 + AluSx SINE Alu 3 298 -14 410 254 59 25 chr12 106882501 106882619 -36903836 - MIR SINE MIR -68 140 19 227 273 0 39 chr12 106882847 106882924 -36903531 - LTR16C LTR ERVL -10 481 408 250 186 0 86 chr12 106883042 106883112 -36903343 + MER81 DNA DNA 50 113 -1 1533 234 79 79 chr12 106883317 106883490 -36902965 - LTR38 LTR ERV1 0 556 384 1924 141 3 34 chr12 106883490 106883810 -36902645 + AluJb SINE Alu 1 310 -2 1533 234 79 79 chr12 106883810 106884246 -36902209 - LTR38 LTR ERV1 -171 385 1 419 385 150 4 chr12 106884546 106884780 -36901675 - L2 LINE L2 -1 3271 3004 559 299 11 6 chr12 106884796 106884970 -36901485 - MIR SINE MIR 0 262 88 1081 175 43 33 chr12 106884981 106885192 -36901263 + MLT1J2 LTR MaLR 3 215 -235 767 93 29 14 chr12 106885220 106885360 -36901095 + CT-rich Low_complexity Low_complexity 2 143 0 1632 194 3 28 chr12 106885367 106885686 -36900769 - AluJo SINE Alu -1 311 1 1540 208 6 24 chr12 106885686 106886018 -36900437 - MER4D LTR ERV1 -26 877 552 1604 194 17 7 chr12 106886046 106886340 -36900115 - MER49 LTR ERV1 -626 297 1 2457 81 7 0 chr12 106886402 106886711 -36899744 + AluSx SINE Alu 1 311 -1 213 121 0 0 chr12 106886718 106886751 -36899704 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 300 200 13 53 chr12 106886825 106886900 -36899555 + MLT1J1 LTR MaLR 355 422 -24 430 178 8 78 chr12 106887301 106887430 -36899025 - LTR33A LTR ERVL 0 523 404 632 239 37 0 chr12 106887608 106887742 -36898713 + MLT1G LTR MaLR 9 147 -443 32 0 0 0 chr12 106887742 106887774 -36898681 + AT_rich Low_complexity Low_complexity 1 32 0 910 67 8 0 chr12 106887774 106887893 -36898562 - L1PA8 LINE L1 -1 6171 6052 28435 29 1 4 chr12 106887893 106892006 -36894449 - L1PA4 LINE L1 -5 6150 2054 774 122 84 0 chr12 106892002 106892133 -36894322 - L1PA8 LINE L1 -104 6068 5927 * 788 209 47 7 chr12 106892145 106892293 -36894162 + MLT1G LTR MaLR 134 287 -303 * 951 181 191 18 chr12 106892292 106892574 -36893881 + MLT1J2 LTR MaLR 175 505 0 226 234 21 0 chr12 106892575 106892622 -36893833 + L2 LINE L2 3224 3271 -1 499 220 254 6 chr12 106892821 106892994 -36893461 - MIR SINE MIR -1 261 46 2386 94 3 0 chr12 106892995 106893302 -36893153 + AluSp SINE Alu 1 308 -5 406 287 42 21 chr12 106893408 106893551 -36892904 + MIR3 SINE MIR 35 180 -28 1466 221 105 50 chr12 106893748 106894186 -36892269 + MLT1H LTR MaLR 1 462 -87 390 232 0 0 chr12 106894342 106894424 -36892031 - MLT1K LTR MaLR -21 567 486 392 252 114 110 chr12 106894503 106894820 -36891635 - MLT1J LTR MaLR -193 318 1 677 229 83 10 chr12 106894829 106895021 -36891434 + L2 LINE L2 3108 3313 0 4053 159 80 11 chr12 106895242 106896227 -36890228 - L1MC2 LINE L1 0 6344 5171 251 286 48 0 chr12 106896484 106896547 -36889908 - MIR SINE MIR -114 94 29 1104 236 107 41 chr12 106896705 106897069 -36889386 - MLT1K LTR MaLR -17 571 184 2398 107 6 38 chr12 106897174 106897521 -36888934 + MER1B DNA MER1_type 2 337 0 2166 124 7 0 chr12 106897570 106897876 -36888579 - AluSx SINE Alu -4 308 1 207 229 344 10 chr12 106897939 106898035 -36888420 + MIR SINE MIR 19 146 -62 3425 142 44 32 chr12 106898043 106898208 -36888247 + L1MA4 LINE L1 4698 4860 -1320 2107 128 7 3 chr12 106898208 106898505 -36887950 - AluSx SINE Alu -14 298 1 3425 142 44 32 chr12 106898505 106899084 -36887371 + L1MA4 LINE L1 4860 5437 -743 787 90 10 0 chr12 106899084 106899184 -36887271 + FRAM SINE Alu 24 124 -52 5381 152 10 2 chr12 106899234 106900098 -36886357 + L1MA4 LINE L1 5430 6300 0 350 267 100 67 chr12 106900193 106900267 -36886188 - MIR SINE MIR 0 262 192 1003 188 21 5 chr12 106900267 106900453 -36886002 - MER5A DNA MER1_type 0 189 1 350 267 100 67 chr12 106900453 106900588 -36885867 - MIR SINE MIR -70 192 46 396 0 0 0 chr12 106900950 106900994 -36885461 + (TG)n Simple_repeat Simple_repeat 2 45 0 2183 100 0 0 chr12 106901078 106901388 -36885067 + AluSx SINE Alu 3 312 0 514 254 15 37 chr12 106901632 106901766 -36884689 - Charlie8 DNA MER1_type -2194 223 93 24 0 0 0 chr12 106901805 106901829 -36884626 + AT_rich Low_complexity Low_complexity 1 24 0 1534 215 3 13 chr12 106901848 106902155 -36884300 + AluJo SINE Alu 2 305 -7 480 268 42 14 chr12 106902415 106902557 -36883898 - MIR SINE MIR -98 164 19 604 105 48 38 chr12 106902646 106902751 -36883704 + FLAM_A SINE Alu 32 137 -5 317 53 0 0 chr12 106902924 106902962 -36883493 - U2 snRNA snRNA -150 38 1 195 167 0 0 chr12 106903070 106903100 -36883355 - MIR SINE MIR -63 145 116 462 262 11 75 chr12 106903255 106903442 -36883013 + L2 LINE L2 2937 3111 -161 185 174 0 22 chr12 106903445 106903491 -36882964 + CT-rich Low_complexity Low_complexity 4 48 0 1833 167 10 3 chr12 106903493 106903786 -36882669 - AluJb SINE Alu -17 295 1 204 333 141 0 chr12 106904200 106904299 -36882156 - L2 LINE L2 -1 3312 3200 371 250 25 0 chr12 106904399 106904479 -36881976 - MIR SINE MIR -103 159 78 * 641 271 92 23 chr12 106904475 106904693 -36881762 - MIR SINE MIR -28 234 2 22 35 0 0 chr12 106905125 106905154 -36881301 + AT_rich Low_complexity Low_complexity 1 29 0 255 304 268 5 chr12 106905239 106905459 -36880996 + L2 LINE L2 1801 2078 -1236 306 278 35 52 chr12 106905495 106905610 -36880845 + L2 LINE L2 2237 2349 -965 1264 172 53 0 chr12 106905612 106905730 -36880725 + AluJo SINE Alu 3 138 -174 207 0 0 0 chr12 106905730 106905753 -36880702 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1264 172 53 0 chr12 106905753 106905843 -36880612 + AluJo SINE Alu 138 222 -90 306 226 0 0 chr12 106905892 106905954 -36880501 + L2 LINE L2 3252 3313 0 35 0 0 0 chr12 106905969 106906004 -36880451 + AT_rich Low_complexity Low_complexity 1 35 0 222 240 213 13 chr12 106906152 106906227 -36880228 + MIR SINE MIR 5 94 -168 2224 84 3 7 chr12 106906269 106906568 -36879887 + AluSx SINE Alu 1 298 -14 334 221 0 13 chr12 106908167 106908244 -36878211 - MER3 DNA MER1_type -124 85 10 294 288 126 18 chr12 106908365 106908476 -36877979 + MIR3 SINE MIR 86 208 0 2303 113 0 0 chr12 106908481 106908790 -36877665 - AluSc SINE Alu 0 309 1 479 290 80 128 chr12 106909014 106910028 -36876427 - L2 LINE L2 -181 3091 2129 840 257 44 24 chr12 106910087 106910336 -36876119 - MLT1H LTR MaLR -239 310 57 21 0 0 0 chr12 106910486 106910507 -36875948 + AT_rich Low_complexity Low_complexity 1 21 0 664 198 17 0 chr12 106910518 106910634 -36875821 - FLAM_C SINE Alu -15 118 1 23 33 0 0 chr12 106910672 106910702 -36875753 + AT_rich Low_complexity Low_complexity 1 30 0 3088 132 18 4 chr12 106910872 106911366 -36875089 - L1PA16 LINE L1 -3 6163 5663 203 143 0 24 chr12 106911398 106911440 -36875015 + (CATA)n Simple_repeat Simple_repeat 3 43 0 255 255 37 28 chr12 106911746 106911904 -36874551 - L1MC/D LINE L1 -302 5819 5682 246 193 0 70 chr12 106914350 106914407 -36872048 - L2 LINE L2 0 3313 3261 340 328 98 16 chr12 106914529 106914651 -36871804 - L2 LINE L2 0 3313 3182 336 264 36 36 chr12 106914684 106914794 -36871661 - L2 LINE L2 -432 2882 2773 292 301 54 0 chr12 106914990 106915083 -36871372 - L2 LINE L2 -6 3266 3169 611 213 15 15 chr12 106915150 106915286 -36871169 + MIR SINE MIR 78 213 -49 2115 118 0 0 chr12 106915877 106916156 -36870299 + AluSx SINE Alu 1 279 -33 258 32 0 0 chr12 106916158 106916189 -36870266 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr12 106916189 106916214 -36870241 + (TAA)n Simple_repeat Simple_repeat 1 25 0 29 70 0 0 chr12 106916569 106916626 -36869829 + AT_rich Low_complexity Low_complexity 1 57 0 824 248 54 5 chr12 106917874 106918057 -36868398 + MIR SINE MIR 29 226 -36 2287 76 52 0 chr12 106918057 106918347 -36868108 + AluSp SINE Alu 1 305 -8 824 248 54 5 chr12 106918347 106918385 -36868070 + MIR SINE MIR 226 261 -1 278 252 64 110 chr12 106918892 106919110 -36867345 - L2 LINE L2 -4 3309 3102 219 333 40 40 chr12 106919315 106919441 -36867014 - L2 LINE L2 -202 3070 2945 22 35 0 0 chr12 106920665 106920694 -36865761 + AT_rich Low_complexity Low_complexity 1 29 0 2097 90 0 0 chr12 106920808 106921075 -36865380 - AluY SINE Alu 0 311 45 1302 239 169 46 chr12 106921075 106921320 -36865135 - HAL1 LINE L1 -140 2367 2153 2261 114 0 3 chr12 106921320 106921628 -36864827 - AluSx SINE Alu -5 307 1 1302 239 169 46 chr12 106921628 106922222 -36864233 - HAL1 LINE L1 -354 2153 1425 358 223 203 58 chr12 106922468 106922723 -36863732 + L1ME4a LINE L1 5774 6053 -112 1382 207 18 30 chr12 106922739 106923072 -36863383 - L1MD2 LINE L1 -13 6346 6018 2580 62 0 0 chr12 106923074 106923383 -36863072 + AluY SINE Alu 1 309 -2 1101 119 0 0 chr12 106923383 106923564 -36862891 + AluY SINE Alu 133 313 0 1866 168 7 0 chr12 106923993 106924291 -36862164 - AluJb SINE Alu -5 307 8 529 325 138 8 chr12 106924946 106925422 -36861033 - L2 LINE L2 -39 3274 2718 183 100 0 0 chr12 106925640 106925670 -36860785 + (T)n Simple_repeat Simple_repeat 1 30 0 428 309 27 13 chr12 106927238 106927387 -36859068 + L2 LINE L2 2932 3082 -190 437 227 0 59 chr12 106927592 106927711 -36858744 - MER3 DNA MER1_type -97 112 1 774 256 0 53 chr12 106927726 106927953 -36858502 - MER58C DNA MER1_type 0 215 1 694 111 0 0 chr12 106928034 106928133 -36858322 + FLAM_C SINE Alu 13 111 -32 2139 124 0 0 chr12 106928170 106928475 -36857980 + AluSx SINE Alu 1 305 0 1696 165 11 18 chr12 106928705 106929015 -36857440 - AluJb SINE Alu 0 308 1 1154 233 96 46 chr12 106929943 106930582 -36855873 - L2 LINE L2 0 3313 2654 366 252 48 29 chr12 106930987 106931090 -36855365 + MIR SINE MIR 7 111 -151 265 222 62 49 chr12 106931316 106931397 -36855058 + L2 LINE L2 2692 2773 -541 731 204 6 12 chr12 106931398 106931565 -36854890 + MER20 DNA MER1_type 54 219 0 708 241 101 116 chr12 106931565 106932149 -36854306 + L2 LINE L2 2742 3307 -6 374 348 8 0 chr12 106932153 106932271 -36854184 - MIR SINE MIR -143 119 1 244 247 82 27 chr12 106932271 106932318 -36854137 + L2 LINE L2 3206 3256 -16 257 101 34 67 chr12 106932326 106932415 -36854040 + (TATAA)n Simple_repeat Simple_repeat 5 90 0 355 239 11 11 chr12 106932470 106932562 -36853893 + MIR SINE MIR 54 145 -63 332 348 11 53 chr12 106932970 106933157 -36853298 + MER5A DNA MER1_type 1 179 -10 2519 43 0 16 chr12 106933676 106933979 -36852476 + AluY SINE Alu 1 298 -13 279 0 0 0 chr12 106934079 106934110 -36852345 + (CA)n Simple_repeat Simple_repeat 2 32 0 1978 150 10 0 chr12 106934168 106934461 -36851994 - AluSx SINE Alu -16 296 1 416 293 56 36 chr12 106934464 106934713 -36851742 - L1MC4a LINE L1 -1978 5830 5577 24 32 0 0 chr12 106935218 106935249 -36851206 + AT_rich Low_complexity Low_complexity 1 31 0 2385 67 0 3 chr12 106935519 106935817 -36850638 - AluY SINE Alu -14 297 1 2318 105 3 0 chr12 106937078 106937383 -36849072 + AluSp SINE Alu 1 306 -7 334 289 141 7 chr12 106938301 106938436 -36848019 - L1ME4a LINE L1 -5 6116 5964 2053 91 25 4 chr12 106939203 106939524 -36846931 - AluSp SINE Alu 0 327 1 3182 264 74 85 chr12 106940034 106941161 -36845294 - L2 LINE L2 -377 2937 1800 2460 74 0 0 chr12 106941161 106941457 -36844998 + AluY SINE Alu 1 296 -15 3182 264 74 85 chr12 106941457 106941603 -36844852 - L2 LINE L2 -1514 1800 1654 1929 100 36 25 chr12 106941603 106941882 -36844573 + AluSx SINE Alu 1 282 -30 3182 264 74 85 chr12 106941882 106941988 -36844467 - L2 LINE L2 -1660 1654 1548 2279 107 0 0 chr12 106941988 106942279 -36844176 + AluSg SINE Alu 1 291 -19 3182 264 74 85 chr12 106942279 106942429 -36844026 - L2 LINE L2 -1766 1548 1422 253 338 0 0 chr12 106943033 106943113 -36843342 - MIR SINE MIR 0 262 183 390 312 280 20 chr12 106943560 106943903 -36842552 + L3 LINE CR1 722 1153 -424 293 317 151 5 chr12 106943974 106944173 -36842282 + L3 LINE CR1 1343 1570 -7 239 250 66 13 chr12 106944656 106944732 -36841723 - MIR3 SINE MIR -17 191 112 187 274 253 0 chr12 106945168 106945263 -36841192 - L2 LINE L2 -1 3271 3153 2304 117 0 0 chr12 106945335 106945635 -36840820 + AluSx SINE Alu 3 302 -10 452 184 0 0 chr12 106945773 106945849 -36840606 + Tigger7 DNA MER2_type 1 76 -657 2063 148 0 0 chr12 106947058 106947356 -36839099 + AluSx SINE Alu 1 298 -14 893 204 5 21 chr12 106948515 106948701 -36837754 - AluJb SINE Alu -1 311 129 2309 91 0 3 chr12 106948774 106949072 -36837383 - AluSx SINE Alu -13 299 3 26 0 0 0 chr12 106949113 106949139 -36837316 + AT_rich Low_complexity Low_complexity 1 26 0 283 267 144 83 chr12 106949835 106950375 -36836080 - L1ME4a LINE L1 -158 5963 5391 383 316 56 28 chr12 106950421 106950636 -36835819 - L1ME4a LINE L1 -1037 5109 4889 1336 111 0 25 chr12 106950636 106950835 -36835620 + AluSg SINE Alu 1 194 -116 289 292 143 23 chr12 106951683 106951873 -36834582 - MIR SINE MIR -30 232 22 2293 85 0 0 chr12 106952523 106952841 -36833614 - AluSx SINE Alu 0 318 1 533 253 198 0 chr12 106954009 106954171 -36832284 - MIR SINE MIR -49 213 20 580 230 105 7 chr12 106954719 106954871 -36831584 - MIR SINE MIR -95 167 1 350 293 38 0 chr12 106955309 106955415 -36831040 - MER94 DNA DNA -24 110 1 265 268 72 0 chr12 106956101 106956198 -36830257 + L1ME4a LINE L1 5823 5926 -195 1794 172 23 0 chr12 106956873 106957176 -36829279 - AluJo SINE Alu -2 310 1 1792 94 0 17 chr12 106957908 106958142 -36828313 + AluSx SINE Alu 1 230 -82 2330 90 3 0 chr12 106959516 106959816 -36826639 - AluSp SINE Alu -12 301 1 758 312 122 20 chr12 106961281 106961725 -36824730 + L2 LINE L2 2619 3104 -209 884 196 12 41 chr12 106961752 106961848 -36824607 - L1MEc LINE L1 -5381 1015 918 1538 174 36 11 chr12 106961848 106962123 -36824332 - AluJo SINE Alu -3 309 28 884 196 12 41 chr12 106962123 106962271 -36824184 - L1MEc LINE L1 -5478 918 778 268 224 32 104 chr12 106962765 106962890 -36823565 - MIR SINE MIR -52 210 95 2220 113 0 0 chr12 106962985 106963285 -36823170 - AluSx SINE Alu -12 300 1 750 271 38 33 chr12 106963816 106964056 -36822399 + MIR SINE MIR 22 262 0 229 322 167 0 chr12 106964157 106964247 -36822208 + L2 LINE L2 3168 3272 0 772 184 0 0 chr12 106964984 106965109 -36821346 + FLAM_A SINE Alu 1 125 -8 2607 191 170 25 chr12 106965752 106966500 -36819955 - Charlie1a DNA MER1_type -532 923 68 418 292 108 21 chr12 106966526 106966789 -36819666 - L2 LINE L2 -264 3049 2713 1173 170 0 113 chr12 106967301 106967619 -36818836 + AluSx SINE Alu 1 282 -30 216 86 0 0 chr12 106968599 106968634 -36817821 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr12 106971854 106971878 -36814577 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr12 106972279 106972310 -36814145 + AT_rich Low_complexity Low_complexity 1 31 0 272 89 0 22 chr12 106973963 106974008 -36812447 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 214 278 0 19 chr12 106981981 106982035 -36804420 + CT-rich Low_complexity Low_complexity 1 53 0 1162 110 12 0 chr12 106985564 106985727 -36800728 - AluSq SINE Alu -148 165 1 754 215 89 14 chr12 106985727 106986020 -36800435 - L1MEc LINE L1 -3988 2408 2094 626 236 34 26 chr12 106986026 106986259 -36800196 - L1MEc LINE L1 -4461 1935 1701 359 239 104 104 chr12 106986304 106986341 -36800114 - L1MEc LINE L1 -4616 1780 1744 780 145 15 15 chr12 106986341 106986472 -36799983 - FLAM_C SINE Alu 0 133 3 359 239 104 104 chr12 106986472 106986789 -36799666 - L1MEc LINE L1 -4651 1745 1426 1152 215 42 58 chr12 106986840 106986999 -36799456 - L1MEc LINE L1 -4922 1474 1314 1823 153 0 82 chr12 106986999 106987339 -36799116 - AluSx SINE Alu 0 312 1 1152 215 42 58 chr12 106987339 106987701 -36798754 - L1MEc LINE L1 -5082 1314 961 1592 152 52 15 chr12 106987786 106988055 -36798400 - AluJo SINE Alu -33 279 1 2157 261 55 25 chr12 106988055 106988727 -36797728 - L1MEc LINE L1 -5578 818 119 2283 101 0 0 chr12 106988727 106989023 -36797432 - AluSg SINE Alu -14 296 1 2157 261 55 25 chr12 106989023 106989111 -36797344 - L1MEc LINE L1 -6277 119 35 1177 76 22 33 chr12 106989128 106989312 -36797143 - L1PA10 LINE L1 0 6168 5987 2100 24 0 0 chr12 106989836 106990087 -36796368 - L1PA3 LINE L1 -339 5816 5566 2956 9 3 3 chr12 106990087 106990424 -36796031 + L1PA3 LINE L1 5815 6155 0 23 33 0 0 chr12 106990424 106990454 -36796001 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr12 106990520 106990563 -36795892 + AT_rich Low_complexity Low_complexity 1 43 0 379 262 14 43 chr12 106991003 106991144 -36795311 + L1M4 LINE L1 3084 3220 -2926 775 197 16 49 chr12 106991145 106991328 -36795127 + FRAM SINE Alu 1 171 -5 357 268 9 94 chr12 106991449 106991579 -36794876 + L1M4 LINE L1 3371 3478 -2668 2097 146 0 7 chr12 106991579 106991887 -36794568 + AluSx SINE Alu 5 310 -2 357 268 9 94 chr12 106991887 106991969 -36794486 + L1M4 LINE L1 3478 3565 -2581 207 363 71 44 chr12 106992152 106992334 -36794121 + L2 LINE L2 3074 3260 -12 837 239 93 0 chr12 106993139 106993344 -36793111 + MER58A DNA MER1_type 1 224 0 41 78 0 0 chr12 106993345 106993435 -36793020 + AT_rich Low_complexity Low_complexity 1 90 0 2404 88 3 0 chr12 106993716 106994024 -36792431 - AluSp SINE Alu -4 309 1 1845 169 0 10 chr12 106995067 106995363 -36791092 + AluJb SINE Alu 1 293 -19 326 278 52 10 chr12 106995425 106995522 -36790933 + MER5A DNA MER1_type 9 109 -80 1655 212 64 129 chr12 106995767 106996372 -36790083 - L1MDa LINE L1 -4153 2387 1744 263 264 14 0 chr12 106996372 106996444 -36790011 - U13 snRNA snRNA -26 78 6 1655 212 64 129 chr12 106996444 106996654 -36789801 - L1MDa LINE L1 -4796 1744 1522 1995 152 10 7 chr12 106996654 106996964 -36789491 - AluSx SINE Alu -1 311 1 1655 212 64 129 chr12 106996964 106997064 -36789391 - L1MDa LINE L1 -5018 1522 1417 291 54 0 0 chr12 106997064 106997101 -36789354 + (TG)n Simple_repeat Simple_repeat 2 38 0 1655 212 64 129 chr12 106997101 106997309 -36789146 - L1MDa LINE L1 -5123 1417 1269 510 221 8 33 chr12 106997854 106997976 -36788479 + FLAM_A SINE Alu 1 119 -14 275 237 13 40 chr12 106998011 106998087 -36788368 - Tigger5 DNA MER2_type 0 2323 2250 * 336 167 0 0 chr12 106998055 106998109 -36788346 - Tigger5 DNA MER2_type -2268 55 2 2129 104 17 30 chr12 106998141 106998440 -36788015 + AluSx SINE Alu 1 295 -17 630 253 124 20 chr12 106998611 106998813 -36787642 + MIR SINE MIR 34 256 -6 1951 139 0 7 chr12 106998940 106999278 -36787177 + AluSq SINE Alu 1 336 0 309 281 86 0 chr12 106999819 106999958 -36786497 + L1ME LINE L1 5512 5662 -459 2127 128 0 0 chr12 107000020 107000324 -36786131 + AluSx SINE Alu 1 304 -8 1927 163 0 0 chr12 107000449 107000737 -36785718 + AluSx SINE Alu 1 288 -24 872 126 0 8 chr12 107001723 107001842 -36784613 + FLAM_C SINE Alu 1 118 -25 315 286 162 22 chr12 107001951 107002170 -36784285 - MIR SINE MIR -6 256 3 351 0 0 0 chr12 107002671 107002710 -36783745 + (TG)n Simple_repeat Simple_repeat 2 40 0 2170 96 7 3 chr12 107003547 107003839 -36782616 + AluSx SINE Alu 1 293 -19 1883 168 9 25 chr12 107004596 107004912 -36781543 + AluJo SINE Alu 1 311 -1 195 254 104 0 chr12 107004916 107004983 -36781472 + L2 LINE L2 2691 2764 -550 308 323 10 10 chr12 107005143 107005239 -36781216 + L2 LINE L2 3199 3294 -19 2111 121 0 36 chr12 107005725 107006031 -36780424 - AluSx SINE Alu -17 295 1 417 226 15 186 chr12 107006288 107006492 -36779963 - MIR SINE MIR -74 188 20 200 375 42 21 chr12 107006701 107006797 -36779658 + L2 LINE L2 3154 3251 -21 618 125 11 0 chr12 107006935 107007023 -36779432 + AluJ/FLAM SINE Alu 2 90 -222 1864 147 10 20 chr12 107007530 107007822 -36778633 + AluJo SINE Alu 1 289 -23 236 82 0 144 chr12 107008411 107008475 -36777980 - L1MB3 LINE L1 0 6180 6125 2494 75 0 10 chr12 107009123 107009429 -36777026 - AluSc SINE Alu -4 305 3 429 301 159 22 chr12 107009855 107010081 -36776374 + MIR SINE MIR 6 262 0 23 54 0 0 chr12 107010925 107010962 -36775493 + AT_rich Low_complexity Low_complexity 1 37 0 2817 10 0 0 chr12 107011553 107011858 -36774597 + AluYa5 SINE Alu 1 305 -6 348 189 67 13 chr12 107011878 107011984 -36774471 - L1ME LINE L1 -346 5820 5716 510 216 86 9 chr12 107012754 107012870 -36773585 + FLAM_A SINE Alu 1 125 -17 1239 136 14 28 chr12 107012923 107013137 -36773318 + MER20 DNA MER1_type 5 215 -4 379 167 0 0 chr12 107013643 107013709 -36772746 - L1MA9 LINE L1 -17 6295 6230 1328 175 74 4 chr12 107013930 107014187 -36772268 - Tigger3(Golem) DNA MER2_type -1 3028 2754 2070 106 7 11 chr12 107014240 107014547 -36771908 - AluSx SINE Alu 0 306 1 1051 83 15 0 chr12 107014547 107014680 -36771775 - AluSq/x SINE Alu -178 135 1 2297 90 0 3 chr12 107014939 107015229 -36771226 - AluSc SINE Alu -20 289 1 873 142 0 0 chr12 107015538 107015665 -36770790 + AluJb SINE Alu 1 127 -185 584 278 76 32 chr12 107015684 107015931 -36770524 + MIR SINE MIR 2 249 -13 2022 156 17 0 chr12 107016040 107016342 -36770113 + AluSq SINE Alu 1 307 -6 205 264 14 69 chr12 107016505 107016538 -36769917 + L2 LINE L2 3155 3188 -84 1701 148 49 7 chr12 107016538 107016843 -36769612 - L1MA4 LINE L1 -4 6296 5979 205 264 14 69 chr12 107016843 107016881 -36769574 + L2 LINE L2 3188 3222 -50 1224 120 0 0 chr12 107017419 107017586 -36768869 - AluSg/x SINE Alu -13 297 131 1895 183 6 3 chr12 107017694 107018005 -36768450 + AluJb SINE Alu 1 312 0 225 258 81 0 chr12 107018042 107018104 -36768351 + L2 LINE L2 3246 3312 -1 2297 105 0 3 chr12 107018179 107018485 -36767970 + AluSx SINE Alu 1 305 -7 2070 113 0 13 chr12 107018848 107019149 -36767306 + AluSx SINE Alu 1 297 -15 2097 146 0 0 chr12 107019341 107019649 -36766806 + AluSx SINE Alu 3 310 -2 349 239 10 139 chr12 107019685 107019730 -36766725 + L3 LINE CR1 1229 1278 -299 1756 159 25 0 chr12 107019730 107020006 -36766449 + AluSx SINE Alu 6 288 -24 216 0 0 0 chr12 107020013 107020037 -36766418 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 349 239 10 139 chr12 107020037 107020173 -36766282 + L3 LINE CR1 1284 1391 -186 2130 131 3 0 chr12 107020173 107020471 -36765984 + AluSx SINE Alu 1 299 -13 349 239 10 139 chr12 107020471 107020489 -36765966 + L3 LINE CR1 1391 1410 -167 196 148 33 0 chr12 107021383 107021444 -36765011 + (TA)n Simple_repeat Simple_repeat 2 64 0 186 43 0 0 chr12 107021444 107021467 -36764988 + (CA)n Simple_repeat Simple_repeat 2 24 0 546 204 0 65 chr12 107021497 107021605 -36764850 - AluJ/FLAM SINE Alu -210 102 2 1988 145 3 0 chr12 107021862 107022151 -36764304 + AluJb SINE Alu 1 290 -22 208 167 0 0 chr12 107022490 107022526 -36763929 - MIR SINE MIR -9 253 218 1873 139 10 30 chr12 107023815 107024118 -36762337 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 107024188 107024209 -36762246 + AT_rich Low_complexity Low_complexity 1 21 0 480 305 58 34 chr12 107024272 107024652 -36761803 + L1ME3A LINE L1 4350 4738 -1408 313 321 211 8 chr12 107024653 107024890 -36761565 + L1ME3A LINE L1 5097 5381 -765 546 263 193 25 chr12 107025099 107025659 -36760796 + L1ME3A LINE L1 5392 6027 -143 27066 26 4 1 chr12 107025857 107029808 -36756647 + L1PA3 LINE L1 2190 6155 0 503 250 149 16 chr12 107029967 107030137 -36756318 - MIR SINE MIR -29 233 34 2314 82 7 20 chr12 107030137 107030442 -36756013 + AluSx SINE Alu 1 301 -11 503 250 149 16 chr12 107030442 107030459 -36755996 - MIR SINE MIR -228 34 21 23 0 0 0 chr12 107030666 107030689 -36755766 + AT_rich Low_complexity Low_complexity 1 23 0 508 189 54 27 chr12 107030745 107030856 -36755599 - L2 LINE L2 -5 3308 3195 187 230 162 0 chr12 107030958 107031032 -36755423 - MIR3 SINE MIR 0 208 123 199 307 40 40 chr12 107031536 107031611 -36754844 - L2 LINE L2 -9 3263 3189 299 342 55 45 chr12 107032438 107032637 -36753818 + MIR SINE MIR 5 205 -57 191 167 33 83 chr12 107033395 107033455 -36753000 + MIR3 SINE MIR 143 199 -9 697 243 127 57 chr12 107034268 107034827 -36751628 - L1ME4a LINE L1 -11 6110 5513 627 188 312 21 chr12 107034915 107035101 -36751354 + AluJo SINE Alu 43 282 -30 2211 105 0 16 chr12 107035101 107035406 -36751049 - AluSg SINE Alu -10 300 1 983 113 0 0 chr12 107035720 107035884 -36750571 + FLAM_C SINE Alu 1 164 0 21 0 0 0 chr12 107036802 107036823 -36749632 + AT_rich Low_complexity Low_complexity 1 21 0 2405 92 0 6 chr12 107036997 107037337 -36749118 - AluSq SINE Alu 0 338 1 1579 199 48 9 chr12 107037575 107037684 -36748771 - MER2 DNA MER2_type 0 344 241 2164 131 0 0 chr12 107037684 107037989 -36748466 + AluSg SINE Alu 1 305 -5 1579 199 48 9 chr12 107037989 107038210 -36748245 - MER2 DNA MER2_type -103 241 1 24 0 0 0 chr12 107039168 107039192 -36747263 + AT_rich Low_complexity Low_complexity 1 24 0 1162 148 35 57 chr12 107039398 107039577 -36746878 + L1MB7 LINE L1 5936 6110 -74 1986 133 7 10 chr12 107039577 107039871 -36746584 - AluSx SINE Alu -19 293 1 1162 148 35 57 chr12 107039871 107039921 -36746534 + L1MB7 LINE L1 6110 6160 -24 2298 98 0 13 chr12 107040994 107041309 -36745146 - AluSx SINE Alu -1 311 1 24 53 0 0 chr12 107041665 107041703 -36744752 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr12 107041911 107041936 -36744519 + AT_rich Low_complexity Low_complexity 1 25 0 2159 94 0 21 chr12 107042500 107042818 -36743637 + AluSg SINE Alu 1 312 0 300 156 0 0 chr12 107042992 107043037 -36743418 - MER57A LTR ERV1 -64 339 295 2359 103 3 0 chr12 107043321 107043632 -36742823 - AluSp SINE Alu -1 312 1 439 301 55 58 chr12 107044350 107044587 -36741868 + L2 LINE L2 2884 3120 -193 856 134 16 0 chr12 107044587 107044714 -36741741 - FLAM_C SINE Alu 0 133 5 439 301 55 58 chr12 107044714 107044754 -36741701 + L2 LINE L2 3120 3159 -154 2255 90 0 26 chr12 107044754 107045065 -36741390 + AluSx SINE Alu 1 303 -9 439 301 55 58 chr12 107045065 107045115 -36741340 + L2 LINE L2 3159 3211 -102 2156 108 3 46 chr12 107045447 107045772 -36740683 - AluSx SINE Alu -1 311 1 2045 113 41 3 chr12 107046249 107046540 -36739915 + AluSx SINE Alu 1 302 -10 467 200 0 0 chr12 107046540 107046615 -36739840 - FRAM SINE Alu -30 146 72 489 110 96 0 chr12 107046651 107046724 -36739731 - FLAM SINE Alu -19 124 45 697 243 127 57 chr12 107046813 107047372 -36739083 + L1ME4a LINE L1 5513 6110 -11 357 257 66 73 chr12 107047904 107047983 -36738472 - L2 LINE L2 -4 3268 3190 183 42 0 0 chr12 107047983 107048007 -36738448 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1960 153 3 0 chr12 107048009 107048297 -36738158 - AluSx SINE Alu -23 289 1 357 257 66 73 chr12 107048297 107048350 -36738105 - L2 LINE L2 -83 3189 3134 6662 130 28 7 chr12 107048378 107049857 -36736598 + L1MA4 LINE L1 4775 6289 -11 323 258 175 0 chr12 107049937 107050057 -36736398 + MIR3 SINE MIR 64 204 -4 2636 36 0 3 chr12 107050492 107050795 -36735660 - AluY SINE Alu -9 302 1 239 29 57 0 chr12 107050821 107050856 -36735599 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1406 147 13 13 chr12 107051043 107051268 -36735187 + AluJb SINE Alu 67 291 -21 21 36 0 0 chr12 107051979 107052007 -36734448 + AT_rich Low_complexity Low_complexity 1 28 0 1816 140 11 21 chr12 107052035 107052353 -36734102 - AluSq SINE Alu 0 315 1 925 69 5 0 chr12 107052418 107052600 -36733855 - L1PB2 LINE L1 -2 6149 5928 2057 141 7 0 chr12 107053013 107053312 -36733143 + AluSx SINE Alu 1 301 -11 835 121 0 0 chr12 107053382 107053498 -36732957 - AluSg/x SINE Alu -19 293 178 1304 87 0 0 chr12 107053631 107053792 -36732663 + AluSg/x SINE Alu 139 299 -13 2012 121 4 0 chr12 107053988 107054260 -36732195 - AluSx SINE Alu -39 273 1 323 183 0 0 chr12 107054625 107054685 -36731770 + MIR SINE MIR 203 262 0 393 241 155 69 chr12 107054884 107055058 -36731397 - MIR SINE MIR -27 235 47 302 272 37 12 chr12 107055059 107055140 -36731315 + L2 LINE L2 3226 3308 -5 2040 138 7 0 chr12 107055151 107055441 -36731014 + AluSx SINE Alu 1 292 -20 1938 103 57 29 chr12 107055750 107056031 -36730424 - AluSx SINE Alu -23 289 1 409 308 59 34 chr12 107056182 107056419 -36730036 + L2 LINE L2 2939 3181 -132 2128 122 3 0 chr12 107056498 107056819 -36729636 - AluSp SINE Alu 0 322 1 2116 116 7 3 chr12 107056822 107057116 -36729339 - AluSx SINE Alu -17 295 1 822 120 0 0 chr12 107057116 107057224 -36729231 - AluSq/x SINE Alu -178 135 28 1996 117 40 0 chr12 107057869 107058169 -36728286 - AluSx SINE Alu 0 312 1 437 273 31 16 chr12 107058442 107058570 -36727885 + L1MC4a LINE L1 5790 5919 -1889 2370 84 3 3 chr12 107058653 107058952 -36727503 + AluSp SINE Alu 1 299 -14 25 0 0 0 chr12 107059001 107059026 -36727429 + AT_rich Low_complexity Low_complexity 1 25 0 982 169 90 35 chr12 107059064 107059265 -36727190 + AluJb SINE Alu 86 297 -15 762 232 4 107 chr12 107059477 107059650 -36726805 + MIR SINE MIR 11 200 -62 216 0 0 0 chr12 107059650 107059674 -36726781 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1994 115 18 4 chr12 107059676 107059954 -36726501 - AluSx SINE Alu -30 282 1 2509 65 0 3 chr12 107059961 107060270 -36726185 - AluY SINE Alu -3 308 1 762 232 4 107 chr12 107060270 107060293 -36726162 + MIR SINE MIR 207 187 -75 2207 127 9 21 chr12 107060293 107060633 -36725822 + MER44D DNA MER2_type 1 606 -3 762 232 4 107 chr12 107060633 107060696 -36725759 + MIR SINE MIR 186 254 -8 364 256 12 12 chr12 107061105 107061191 -36725264 + MIR3 SINE MIR 112 197 -11 21 0 0 0 chr12 107061772 107061793 -36724662 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr12 107062433 107062458 -36723997 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2763 148 10 4 chr12 107062834 107063268 -36723187 - MSTC LTR MaLR 0 428 1 2405 71 0 3 chr12 107063336 107063633 -36722822 - AluY SINE Alu 0 311 16 1236 217 101 7 chr12 107063645 107063931 -36722524 + MSTD LTR MaLR 84 396 0 268 318 84 19 chr12 107064298 107064405 -36722050 - L2 LINE L2 -956 2358 2245 837 152 7 14 chr12 107064447 107064585 -36721870 + FRAM SINE Alu 38 174 -2 555 221 55 16 chr12 107064669 107064796 -36721659 - FLAM_C SINE Alu 0 133 2 802 189 15 0 chr12 107064912 107065044 -36721411 + FLAM_C SINE Alu 2 135 -8 1736 143 28 17 chr12 107065045 107065332 -36721123 + AluJb SINE Alu 1 290 -22 3377 128 53 62 chr12 107065333 107065877 -36720578 + MER39B LTR ERV1 17 556 -97 758 189 0 8 chr12 107065877 107066009 -36720446 - FLAM_A SINE Alu -1 132 2 3377 128 53 62 chr12 107066009 107066107 -36720348 + MER39B LTR ERV1 556 653 0 31 68 0 0 chr12 107066359 107066418 -36720037 + AT_rich Low_complexity Low_complexity 1 59 0 836 111 0 0 chr12 107066418 107066526 -36719929 - AluJb SINE Alu -194 118 11 569 174 33 11 chr12 107066526 107066618 -36719837 - AluSc SINE Alu -100 209 116 2418 89 3 0 chr12 107066958 107067262 -36719193 - AluSp SINE Alu -7 306 2 2234 106 0 3 chr12 107067265 107067557 -36718898 - AluSg SINE Alu -19 291 1 821 182 0 0 chr12 107067558 107067690 -36718765 - AluJb SINE Alu -178 134 3 717 189 67 18 chr12 107067704 107067868 -36718587 + MSTD LTR MaLR 176 347 -49 267 93 0 0 chr12 107068195 107068238 -36718217 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2020 128 0 3 chr12 107068241 107068523 -36717932 - AluSx SINE Alu -26 286 6 278 268 96 96 chr12 107068546 107068725 -36717730 - L1MC4a LINE L1 -303 5818 5641 839 116 0 95 chr12 107068725 107068872 -36717583 - FLAM_C SINE Alu 0 133 1 278 268 96 96 chr12 107068872 107069097 -36717358 - L1MC4a LINE L1 -480 5641 5418 2298 110 0 0 chr12 107069097 107069397 -36717058 - AluSx SINE Alu -8 304 5 278 268 96 96 chr12 107069397 107069411 -36717044 - L1MC4a LINE L1 -703 5418 5702 2076 128 7 0 chr12 107069411 107069713 -36716742 - AluSx SINE Alu 0 304 1 278 268 96 96 chr12 107069713 107069769 -36716686 - L1MC4a LINE L1 -418 5703 5649 716 256 112 28 chr12 107069868 107070189 -36716266 - L1ME3A LINE L1 -331 5839 5492 2238 125 0 3 chr12 107070190 107070501 -36715954 - AluSq SINE Alu -3 310 1 34 24 0 0 chr12 107070509 107070550 -36715905 + AT_rich Low_complexity Low_complexity 1 41 0 475 295 166 11 chr12 107070631 107070909 -36715546 + LTR33 LTR ERVL 17 337 -184 1239 78 0 0 chr12 107071138 107071291 -36715164 + AluSc SINE Alu 154 306 -3 638 255 64 30 chr12 107071356 107071591 -36714864 - MIR SINE MIR -10 252 10 1794 144 0 44 chr12 107071708 107072006 -36714449 + AluSx SINE Alu 12 296 -16 827 172 100 17 chr12 107072062 107072242 -36714213 + L1MC4 LINE L1 7376 7570 -472 745 220 0 8 chr12 107072246 107072378 -36714077 + FLAM_A SINE Alu 1 131 -11 787 125 9 0 chr12 107072382 107072494 -36713961 + AluJb SINE Alu 22 134 -178 606 249 39 52 chr12 107072519 107072748 -36713707 + L1MC4 LINE L1 7576 7801 -241 734 104 47 0 chr12 107072795 107072901 -36713554 + HY1 scRNA scRNA 1 111 -1 227 132 0 38 chr12 107072901 107072928 -36713527 + (TAAA)n Simple_repeat Simple_repeat 2 28 -24 2065 136 0 0 chr12 107072928 107073214 -36713241 + AluJb SINE Alu 2 287 -25 227 132 0 38 chr12 107073214 107073239 -36713216 + (TAAA)n Simple_repeat Simple_repeat 28 52 0 2021 110 14 0 chr12 107073454 107073785 -36712670 - AluSq SINE Alu 0 335 1 298 286 114 0 chr12 107073786 107073961 -36712494 - L1M4 LINE L1 -1575 4571 4377 3872 99 37 21 chr12 107073977 107074542 -36711913 - L1PB3 LINE L1 -4 6150 5577 2390 90 25 75 chr12 107074542 107074942 -36711513 + L1MC1 LINE L1 5954 6333 0 3475 172 10 23 chr12 107074945 107075076 -36711379 - L1PB3 LINE L1 -563 5591 5460 1719 154 3 53 chr12 107075076 107075412 -36711043 + AluJb SINE Alu 1 321 0 3475 172 10 23 chr12 107075412 107076298 -36710157 - L1PB3 LINE L1 -694 5460 4585 1369 142 0 19 chr12 107076301 107076338 -36710117 + AluSq SINE Alu 100 136 -177 2214 109 3 16 chr12 107076338 107076641 -36709814 + AluSg SINE Alu 1 299 -11 1369 142 0 19 chr12 107076641 107076815 -36709640 + AluSq SINE Alu 136 307 -6 787 211 0 18 chr12 107076817 107076988 -36709467 - L1PB3 LINE L1 -1554 4592 4425 248 117 50 17 chr12 107076990 107077050 -36709405 - L1PB3 LINE L1 -1698 4448 4387 605 82 0 12 chr12 107077081 107077166 -36709289 - MER51A LTR ERV1 -81 553 470 416 111 0 0 chr12 107077184 107077238 -36709217 - FLAM SINE Alu -18 125 72 251 145 0 48 chr12 107077240 107077302 -36709153 - L1PB3 LINE L1 -1702 4444 4386 1015 207 12 72 chr12 107077308 107077330 -36709125 - L1PB3 LINE L1 -1722 4424 4402 853 180 0 0 chr12 107077330 107077458 -36708997 - FLAM_C SINE Alu -5 128 1 1015 207 12 72 chr12 107077458 107077564 -36708891 - L1PB3 LINE L1 -1744 4402 4291 2253 119 0 22 chr12 107077564 107077882 -36708573 - AluSx SINE Alu 0 312 2 1015 207 12 72 chr12 107077882 107078071 -36708384 - L1PB3 LINE L1 -1855 4291 4125 1001 144 26 0 chr12 107078151 107078304 -36708151 - AluSp SINE Alu -11 302 146 1148 151 0 0 chr12 107078404 107078570 -36707885 - AluSx SINE Alu -142 170 5 1012 176 0 0 chr12 107078576 107078735 -36707720 - FRAM SINE Alu -18 158 1 353 292 141 36 chr12 107078772 107078964 -36707491 + MIR SINE MIR 8 219 -43 2157 117 0 3 chr12 107079067 107079367 -36707088 - AluSq SINE Alu -14 299 1 1862 156 0 0 chr12 107079379 107079687 -36706768 - AluSx SINE Alu 0 308 1 2021 143 0 7 chr12 107079707 107080001 -36706454 - AluSx SINE Alu -16 296 5 186 43 0 0 chr12 107080019 107080042 -36706413 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2112 76 10 31 chr12 107080045 107080334 -36706121 - AluSp SINE Alu -30 283 1 3375 159 26 78 chr12 107080334 107081076 -36705379 - MER6 DNA MER2_type -70 795 -10 372 195 24 0 chr12 107081076 107081158 -36705297 - L1M4 LINE L1 -931 5215 5132 933 154 21 0 chr12 107081161 107081304 -36705151 - AluSg/x SINE Alu -8 302 157 809 183 20 0 chr12 107081341 107081494 -36704961 - L1M4 LINE L1 -1888 4258 4103 1437 133 28 0 chr12 107081613 107081831 -36704624 - L1M2 LINE L1 -584 5728 5505 2500 81 0 7 chr12 107081984 107082293 -36704162 - AluSc SINE Alu -2 307 1 2262 125 0 0 chr12 107082305 107082618 -36703837 - AluSq SINE Alu 0 313 1 1030 109 0 0 chr12 107082754 107082891 -36703564 - AluSg/x SINE Alu -2 308 172 438 188 0 0 chr12 107082891 107082960 -36703495 - AluS SINE Alu -242 70 2 1517 143 81 19 chr12 107082964 107083222 -36703233 - AluJb SINE Alu -23 289 16 729 309 98 31 chr12 107083227 107083583 -36702872 + L2 LINE L2 2933 3312 -1 621 114 0 0 chr12 107083929 107084008 -36702447 + FLAM_A SINE Alu 36 114 -28 2187 106 3 0 chr12 107084132 107084453 -36702002 - AluSx SINE Alu 0 322 1 1764 135 127 0 chr12 107084524 107084791 -36701664 - AluJo SINE Alu -1 301 1 518 141 0 0 chr12 107084923 107085001 -36701454 + Alu SINE Alu 235 312 0 2088 135 3 0 chr12 107085256 107085552 -36700903 - AluSx SINE Alu -15 297 1 482 0 17 0 chr12 107085696 107085754 -36700701 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 441 289 77 10 chr12 107085778 107085972 -36700483 - L1ME3A LINE L1 -225 5945 5739 267 309 126 22 chr12 107085996 107086219 -36700236 - L1ME LINE L1 -395 5775 5530 1654 88 18 0 chr12 107086722 107086939 -36699516 + AluJb SINE Alu 82 302 -10 2259 95 3 0 chr12 107086942 107087236 -36699219 + AluSc SINE Alu 1 295 -14 683 130 17 26 chr12 107087243 107087358 -36699097 + U5 snRNA snRNA 1 114 -2 349 145 0 16 chr12 107087365 107087427 -36699028 - Alu SINE Alu 0 302 242 205 217 15 29 chr12 107087815 107087886 -36698569 + MIR SINE MIR 14 82 -126 2304 81 0 0 chr12 107087991 107088320 -36698135 + AluSx SINE Alu 1 329 0 504 212 106 30 chr12 107088405 107088537 -36697918 + MIR SINE MIR 9 150 -112 381 31 31 31 chr12 107088538 107088549 -36697906 + (GAAA)n Simple_repeat Simple_repeat 3 13 -53 2353 100 0 3 chr12 107088549 107088860 -36697595 + AluY SINE Alu 1 310 -1 381 31 31 31 chr12 107088860 107088912 -36697543 + (GAAA)n Simple_repeat Simple_repeat 12 66 0 2107 108 27 3 chr12 107088929 107089224 -36697231 - AluSx SINE Alu -10 302 1 475 292 70 11 chr12 107089224 107089409 -36697046 - MIR SINE MIR -20 242 47 617 217 128 11 chr12 107089459 107089639 -36696816 + L1MEc LINE L1 2204 2404 -4317 808 133 37 37 chr12 107089666 107089801 -36696654 + AluJo SINE Alu 2 136 -176 1828 235 90 37 chr12 107089820 107090589 -36695866 + L1MEc LINE L1 2364 3156 -3384 2073 82 68 14 chr12 107090736 107091029 -36695426 - AluSp SINE Alu -2 311 3 808 154 0 8 chr12 107091058 107091175 -36695280 - FLAM_C SINE Alu -17 116 1 2213 132 0 0 chr12 107091878 107092182 -36694273 + AluJo SINE Alu 1 304 -8 2087 128 0 13 chr12 107092333 107092639 -36693816 + AluSx SINE Alu 1 302 -10 491 271 0 0 chr12 107092646 107092753 -36693702 + 5S rRNA rRNA 2 108 -13 23 33 0 0 chr12 107092754 107092784 -36693671 + AT_rich Low_complexity Low_complexity 1 30 0 2155 110 13 13 chr12 107092786 107093096 -36693359 + AluSx SINE Alu 3 312 0 1188 78 0 0 chr12 107093106 107093247 -36693208 + AluSq/x SINE Alu 1 141 -172 1600 96 14 0 chr12 107093265 107093473 -36692982 + AluSg/x SINE Alu 84 294 -16 300 300 14 64 chr12 107093617 107093757 -36692698 + MIR SINE MIR 16 148 -114 226 313 44 55 chr12 107093814 107093996 -36692459 + L2 LINE L2 2809 2988 -325 441 216 59 0 chr12 107094065 107094167 -36692288 - FLAM_A SINE Alu -32 110 3 243 269 277 35 chr12 107094170 107094430 -36692025 + L2 LINE L2 2990 3312 -1 25 31 0 0 chr12 107095664 107095696 -36690759 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr12 107096814 107096856 -36689599 + AT_rich Low_complexity Low_complexity 1 42 0 1090 191 43 9 chr12 107097567 107097777 -36688678 + MER20 DNA MER1_type 2 218 -1 1425 153 14 0 chr12 107098041 107098257 -36688198 + AluSx SINE Alu 1 219 -93 361 200 15 6 chr12 107098369 107098451 -36688004 + AluSp/q SINE Alu 192 254 -49 2599 55 0 0 chr12 107098465 107098774 -36687681 - AluY SINE Alu 0 311 3 542 105 0 0 chr12 107098798 107098874 -36687581 - FLAM_A SINE Alu -3 139 64 2087 148 0 0 chr12 107099300 107099611 -36686844 + AluJb SINE Alu 1 311 -1 1398 16 6 22 chr12 107099621 107099804 -36686651 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2126 135 3 0 chr12 107100253 107100557 -36685898 - AluSx SINE Alu -3 309 5 905 136 0 0 chr12 107101150 107101275 -36685180 + FLAM_C SINE Alu 1 125 -8 1256 140 48 118 chr12 107101644 107101958 -36684497 - AluJo SINE Alu -20 292 1 2263 102 0 20 chr12 107101960 107102265 -36684190 - AluSq SINE Alu -14 299 1 978 120 0 0 chr12 107102269 107102402 -36684053 - AluJb SINE Alu -179 133 1 727 128 145 8 chr12 107103121 107103238 -36683217 - FLAM_C SINE Alu 0 133 1 1688 90 22 34 chr12 107103238 107103506 -36682949 - Tigger3b DNA MER2_type -639 592 328 321 106 94 94 chr12 107103525 107103610 -36682845 - Tigger3(Golem) DNA MER2_type -874 2155 274 280 83 0 0 chr12 107103608 107103644 -36682811 - Tigger3(Golem) DNA MER2_type -2927 102 67 * 1732 141 87 4 chr12 107103644 107103921 -36682534 - AluSq SINE Alu -13 300 1 320 85 0 21 chr12 107103938 107103985 -36682470 - MER57A LTR ERV1 -63 340 295 276 127 0 0 chr12 107103998 107104053 -36682402 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2082 136 0 7 chr12 107104286 107104596 -36681859 + AluSx SINE Alu 3 310 -2 312 128 0 21 chr12 107104629 107104676 -36681779 + MER57A LTR ERV1 295 340 -63 490 159 0 0 chr12 107104722 107104791 -36681664 + AluS SINE Alu 2 70 -242 966 61 0 0 chr12 107104791 107104906 -36681549 + AluSg/x SINE Alu 174 288 -24 216 0 0 0 chr12 107104911 107104935 -36681520 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2139 72 9 63 chr12 107105814 107106133 -36680322 - AluSx SINE Alu -10 302 1 39 0 0 0 chr12 107107129 107107168 -36679287 + AT_rich Low_complexity Low_complexity 1 39 0 1146 159 93 0 chr12 107107187 107107401 -36679054 - L1PB4 LINE L1 -1 6155 5922 22 0 0 0 chr12 107107404 107107426 -36679029 + AT_rich Low_complexity Low_complexity 1 22 0 207 100 0 0 chr12 107107464 107107494 -36678961 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2620 39 0 10 chr12 107107574 107107886 -36678569 - AluY SINE Alu -2 309 1 482 162 0 0 chr12 107108259 107108333 -36678122 - AluJb SINE Alu -9 303 230 819 132 21 28 chr12 107108338 107108482 -36677973 - AluJb SINE Alu -169 143 1 273 133 0 0 chr12 107108566 107108611 -36677844 - LOR1a LTR ERV1 -214 283 239 1183 153 3 141 chr12 107108628 107108941 -36677514 - L1 LINE L1 -837 5309 5040 227 56 56 0 chr12 107108946 107108982 -36677473 + CT-rich Low_complexity Low_complexity 3 40 0 4082 150 21 87 chr12 107108986 107109473 -36676982 + L1MA7 LINE L1 5405 5806 -485 2178 142 0 0 chr12 107109473 107109775 -36676680 + AluSx SINE Alu 1 302 -10 4082 150 21 87 chr12 107109775 107110200 -36676255 + L1MA7 LINE L1 5806 6257 -34 814 181 0 0 chr12 107111095 107111222 -36675233 + FLAM_C SINE Alu 1 127 -16 1031 111 47 12 chr12 107112007 107112178 -36674277 - L1MA10 LINE L1 -1 6333 6157 2229 116 10 0 chr12 107112231 107112533 -36673922 - AluSx SINE Alu -7 305 1 4131 150 25 54 chr12 107112537 107112612 -36673843 - L1MB1 LINE L1 -34 6155 6079 2342 102 96 0 chr12 107112612 107112944 -36673511 - THE1B LTR MaLR 0 364 1 4131 150 25 54 chr12 107112944 107113661 -36672794 - L1MB1 LINE L1 -110 6079 5386 21 36 0 0 chr12 107114044 107114072 -36672383 + AT_rich Low_complexity Low_complexity 1 28 0 315 290 101 22 chr12 107114339 107114451 -36672004 - MIR SINE MIR 0 262 136 2521 54 0 0 chr12 107114451 107114738 -36671717 + AluY SINE Alu 1 290 -21 195 42 0 0 chr12 107114738 107114762 -36671693 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 315 290 101 22 chr12 107114770 107114795 -36671660 - MIR SINE MIR -126 136 114 1951 162 10 0 chr12 107115007 107115304 -36671151 - AluSx SINE Alu -12 300 1 * 1990 156 3 0 chr12 107115304 107115605 -36670850 - AluJb SINE Alu -10 302 1 460 235 105 19 chr12 107115763 107115925 -36670530 - L1ME3 LINE L1 0 6162 5987 336 148 0 0 chr12 107115987 107116041 -36670414 - L1 LINE L1 -2582 3564 3511 2023 124 0 3 chr12 107116043 107116357 -36670098 - AluY SINE Alu 0 313 1 1806 164 4 0 chr12 107116419 107116735 -36669720 - AluSx SINE Alu 0 317 1 407 208 0 14 chr12 107116750 107116822 -36669633 + MER21B LTR ERV1 23 93 -770 1478 195 13 20 chr12 107116822 107117124 -36669331 - AluJb SINE Alu -8 304 5 460 225 70 7 chr12 107117180 107117322 -36669133 + MER21B LTR ERV1 98 248 -615 2222 93 3 13 chr12 107117324 107117625 -36668830 - AluSx SINE Alu 0 312 15 1520 165 112 4 chr12 107118256 107118523 -36667932 + AluSg1 SINE Alu 1 296 -13 342 0 0 0 chr12 107118954 107118992 -36667463 + (TG)n Simple_repeat Simple_repeat 2 39 0 1654 190 3 11 chr12 107118996 107119280 -36667175 - AluJo SINE Alu -30 282 1 271 260 48 29 chr12 107119461 107119565 -36666890 - MLT1L LTR MaLR -7 608 503 659 262 105 8 chr12 107119732 107119980 -36666475 - MLT1L LTR MaLR -339 276 5 358 283 28 81 chr12 107120231 107120514 -36665941 + L1MB4 LINE L1 5732 5999 -181 * 2370 113 19 16 chr12 107120280 107120651 -36665804 + L1PA16 LINE L1 5770 6141 -25 285 132 0 0 chr12 107120651 107120718 -36665737 - Alu SINE Alu 0 311 245 967 154 0 0 chr12 107120718 107120861 -36665594 - AluSq/x SINE Alu -170 143 1 195 129 0 0 chr12 107120887 107120918 -36665537 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 639 321 69 48 chr12 107121290 107121667 -36664788 - LTR67 LTR ERVL -14 543 159 534 229 25 118 chr12 107121670 107121915 -36664540 - LTR67 LTR ERVL -333 224 3 1263 268 64 27 chr12 107122339 107122722 -36663733 + LTR16C LTR ERVL 90 453 -4 258 293 105 68 chr12 107122869 107123002 -36663453 - MIR SINE MIR -99 163 26 307 187 37 0 chr12 107123179 107123241 -36663214 + L1ME LINE L1 5525 5584 -537 504 130 0 0 chr12 107123242 107123319 -36663136 - L1PA13 LINE L1 -4 6159 6083 1312 292 130 41 chr12 107123319 107124229 -36662226 - HAL1 LINE L1 -1248 1259 269 2373 93 3 6 chr12 107124342 107124655 -36661800 - AluSp SINE Alu -1 312 1 2187 122 10 0 chr12 107124711 107125007 -36661448 - AluSx SINE Alu -13 299 1 22 0 0 0 chr12 107125245 107125267 -36661188 + AT_rich Low_complexity Low_complexity 1 22 0 2012 120 7 14 chr12 107125306 107125590 -36660865 - AluSx SINE Alu -18 294 13 2521 111 8 8 chr12 107125766 107126117 -36660338 + THE1A LTR MaLR 5 355 0 12125 94 8 13 chr12 107126117 107127704 -36658751 + THE1A-int LTR MaLR 1 1580 0 2433 136 8 6 chr12 107127704 107128058 -36658397 + THE1A LTR MaLR 1 355 0 28 0 0 0 chr12 107128073 107128101 -36658354 + AT_rich Low_complexity Low_complexity 1 28 0 2209 113 3 0 chr12 107128560 107128861 -36657594 - AluSg SINE Alu -8 302 1 19036 27 0 0 chr12 107129096 107131980 -36654475 - L1PA2 LINE L1 0 6155 3272 6734 189 27 36 chr12 107132388 107132477 -36653978 - L1 LINE L1 -1052 5094 5006 1988 171 0 0 chr12 107132477 107132782 -36653673 - AluSx SINE Alu -7 305 1 6734 189 27 36 chr12 107132782 107133445 -36653010 - L1 LINE L1 -1140 5006 4339 1877 180 0 7 chr12 107133445 107133750 -36652705 + AluJo SINE Alu 1 303 -9 6734 189 27 36 chr12 107133750 107134156 -36652299 - L1 LINE L1 -1807 4339 3948 1945 165 0 0 chr12 107134156 107134453 -36652002 - AluJb SINE Alu -15 297 1 6734 189 27 36 chr12 107134453 107134799 -36651656 - L1 LINE L1 -2198 3948 3601 6051 137 8 6 chr12 107134801 107135857 -36650598 + L1PA16 LINE L1 5107 6164 -2 2271 80 7 17 chr12 107135919 107136220 -36650235 - AluSc SINE Alu -11 298 1 993 127 0 0 chr12 107136221 107136355 -36650100 - AluSq/x SINE Alu -178 134 1 2254 106 0 3 chr12 107136914 107137216 -36649239 + AluSx SINE Alu 1 301 -11 46 45 0 0 chr12 107137278 107137345 -36649110 + AT_rich Low_complexity Low_complexity 1 67 0 359 85 0 0 chr12 107137352 107137399 -36649056 + ERVL-B1 LTR ERVL 5711 5757 -7 713 200 7 33 chr12 107137400 107137550 -36648905 + MLT2B1 LTR ERVL 2 147 -373 3181 184 60 55 chr12 107137566 107138298 -36648157 - MER21A LTR ERV1 -17 914 179 1654 180 3 14 chr12 107138324 107138618 -36647837 - AluJo SINE Alu -20 292 2 274 233 17 0 chr12 107138769 107138829 -36647626 - AluS SINE Alu -241 62 2 2117 136 3 7 chr12 107138866 107139176 -36647279 + AluSx SINE Alu 3 311 -1 699 140 111 105 chr12 107139176 107139347 -36647108 - MER21A LTR ERV1 -739 192 21 189 107 0 0 chr12 107139347 107139375 -36647080 + (CA)n Simple_repeat Simple_repeat 2 29 0 1295 231 161 6 chr12 107139403 107139699 -36646756 + MLT2B1 LTR ERVL 141 494 -26 351 0 0 0 chr12 107139699 107139738 -36646717 + (CA)n Simple_repeat Simple_repeat 2 40 0 1295 231 161 6 chr12 107139738 107139770 -36646685 + MLT2B1 LTR ERVL 494 520 0 1452 221 28 44 chr12 107139771 107140133 -36646322 - MLT1A2 LTR MaLR -17 357 2 2384 102 0 0 chr12 107140156 107140459 -36645996 - AluSg SINE Alu -7 303 1 3635 127 12 7 chr12 107140694 107141278 -36645177 + L1MA4A LINE L1 5484 6070 -233 1919 136 179 16 chr12 107141496 107141864 -36644591 - MSTA LTR MaLR 0 428 1 377 208 42 0 chr12 107142200 107142296 -36644159 - MIR SINE MIR -10 252 153 451 266 63 0 chr12 107142471 107142614 -36643841 - MIR SINE MIR -109 153 2 3562 157 8 54 chr12 107142730 107142882 -36643573 - MER6A DNA MER2_type -262 603 446 2333 98 3 0 chr12 107142882 107143056 -36643399 - AluSp SINE Alu -7 306 129 207 0 0 0 chr12 107143056 107143079 -36643376 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2333 98 3 0 chr12 107143079 107143209 -36643246 - AluSp SINE Alu -184 129 1 3562 157 8 54 chr12 107143209 107143688 -36642767 - MER6A DNA MER2_type -419 446 1 1983 170 0 0 chr12 107143760 107144072 -36642383 + AluSx SINE Alu 1 312 0 716 162 0 8 chr12 107144235 107144352 -36642103 - FLAM_C SINE Alu -26 117 2 678 252 188 30 chr12 107144387 107144685 -36641770 - L2 LINE L2 0 3313 2969 2285 83 3 20 chr12 107145040 107145340 -36641115 - AluSc SINE Alu -14 295 1 1624 194 78 34 chr12 107145665 107146052 -36640403 - MLT1C LTR MaLR 0 467 64 2256 102 3 19 chr12 107146052 107146365 -36640090 + AluSq SINE Alu 1 308 -5 1130 149 6 0 chr12 107146365 107146540 -36639915 + AluSq SINE Alu 134 309 -4 472 169 0 0 chr12 107146543 107146614 -36639841 - MLT1C LTR MaLR -396 71 1 2219 127 0 0 chr12 107147436 107147735 -36638720 + AluSx SINE Alu 1 299 -13 835 160 0 15 chr12 107148627 107148758 -36637697 - FLAM_A SINE Alu -4 129 1 522 224 37 151 chr12 107148791 107149036 -36637419 + MIR SINE MIR 3 219 -43 230 264 208 0 chr12 107149118 107149190 -36637265 - L2 LINE L2 0 3272 3186 1020 162 7 0 chr12 107149258 107149412 -36637043 - FRAM SINE Alu -22 154 1 789 292 69 71 chr12 107149483 107149571 -36636884 + L2 LINE L2 2592 2679 -634 1943 140 4 0 chr12 107149571 107149849 -36636606 - AluJo SINE Alu -32 280 2 789 292 69 71 chr12 107149849 107150491 -36635964 + L2 LINE L2 2679 3313 0 244 214 0 0 chr12 107150529 107150571 -36635884 + 5S rRNA rRNA 1 42 -79 2119 119 0 22 chr12 107150601 107150912 -36635543 + AluSq SINE Alu 1 304 -9 180 291 17 51 chr12 107151160 107151277 -36635178 + MIR SINE MIR 12 124 -138 734 169 65 49 chr12 107151471 107151655 -36634800 - MER5A DNA MER1_type -2 187 1 820 239 17 6 chr12 107151656 107151836 -36634619 + MIR SINE MIR 10 191 -71 1085 176 45 0 chr12 107151901 107152100 -36634355 + MER3 DNA MER1_type 2 209 0 2288 100 7 7 chr12 107152208 107152517 -36633938 - AluSg1 SINE Alu 0 309 1 401 258 62 0 chr12 107152517 107152614 -36633841 + MIR SINE MIR 62 164 -98 186 307 148 23 chr12 107152797 107152885 -36633570 + L2 LINE L2 3203 3301 -12 2282 110 0 16 chr12 107152905 107153222 -36633233 + AluSx SINE Alu 1 312 0 598 239 0 15 chr12 107153536 107153666 -36632789 - L2 LINE L2 -2 3311 3184 5519 151 12 8 chr12 107154531 107155463 -36630992 + L1MA9 LINE L1 5372 6307 -5 1332 151 25 76 chr12 107155905 107156014 -36630441 - MER33 DNA MER1_type -2261 324 211 1807 164 0 55 chr12 107156014 107156344 -36630111 + AluJo SINE Alu 1 312 0 1332 151 25 76 chr12 107156344 107156551 -36629904 - MER33 DNA MER1_type -2374 211 24 743 231 87 12 chr12 107156566 107156739 -36629716 + MIR SINE MIR 77 262 0 1769 144 22 0 chr12 107157185 107157456 -36628999 + AluSx SINE Alu 36 312 0 280 306 154 40 chr12 107157502 107157934 -36628521 - L2 LINE L2 -108 3205 2731 2184 124 3 0 chr12 107158355 107158654 -36627801 + AluSx SINE Alu 1 300 -12 337 113 0 0 chr12 107158603 107158656 -36627799 + AluSc SINE Alu 247 299 0 678 328 101 17 chr12 107158671 107159028 -36627427 - L2 LINE L2 -638 2676 2290 329 268 80 9 chr12 107159418 107159530 -36626925 + L2 LINE L2 3193 3312 -1 672 253 33 42 chr12 107159586 107159827 -36626628 + HAL1 LINE L1 4 242 -2265 202 308 19 0 chr12 107159935 107159987 -36626468 + MIR SINE MIR 206 258 -4 1514 194 22 29 chr12 107160044 107160358 -36626097 - AluJo SINE Alu 0 312 1 1274 226 141 44 chr12 107160405 107160839 -36625616 - MLT1H LTR MaLR 0 549 74 1043 255 58 66 chr12 107160869 107161296 -36625159 - HAL1 LINE L1 -908 1599 1176 2028 139 3 3 chr12 107161296 107161590 -36624865 - AluSx SINE Alu -16 296 3 1814 171 13 3 chr12 107161602 107161900 -36624555 - AluJo SINE Alu -3 309 9 2059 132 0 3 chr12 107161907 107162194 -36624261 - AluSx SINE Alu -17 295 10 240 266 25 0 chr12 107162213 107162292 -36624163 - HAL1 LINE L1 -1329 1178 1098 4581 147 12 70 chr12 107162426 107162624 -36623831 - L1PB4 LINE L1 0 6156 5948 2018 144 3 0 chr12 107162624 107162929 -36623526 - AluSx SINE Alu -6 306 1 4581 147 12 70 chr12 107162929 107163241 -36623214 - L1PB4 LINE L1 -208 5948 5620 455 70 0 200 chr12 107163241 107163341 -36623114 - MADE1 DNA Mariner 0 80 1 4581 147 12 70 chr12 107163341 107163714 -36622741 - L1PB4 LINE L1 -536 5620 5227 2297 114 0 3 chr12 107163714 107164020 -36622435 - AluSq SINE Alu -8 305 1 856 148 0 22 chr12 107164023 107164158 -36622297 - AluJo/FLAM SINE Alu -170 132 1 2361 96 0 0 chr12 107164165 107164468 -36621987 - AluY SINE Alu -8 303 1 4581 147 12 70 chr12 107164468 107164650 -36621805 - L1PB4 LINE L1 -937 5219 5157 2070 154 0 0 chr12 107164781 107165093 -36621362 + AluSx SINE Alu 1 312 0 383 286 18 9 chr12 107165274 107165386 -36621069 - L2 LINE L2 0 3313 3201 5958 184 10 12 chr12 107165645 107167267 -36619188 + L1MA3 LINE L1 4687 6304 -1 995 92 8 0 chr12 107167612 107167742 -36618713 - THE1B LTR MaLR 0 364 234 1155 110 21 37 chr12 107167842 107167898 -36618557 - L1MA3 LINE L1 0 6305 6250 2366 87 0 22 chr12 107167898 107168209 -36618246 - AluSc SINE Alu -5 304 1 1155 110 21 37 chr12 107168209 107168343 -36618112 - L1MA3 LINE L1 -55 6250 6118 1367 129 10 0 chr12 107168346 107168539 -36617916 + AluSx SINE Alu 1 195 -117 1294 109 77 0 chr12 107168539 107168722 -36617733 - THE1B LTR MaLR -166 198 2 12614 96 4 0 chr12 107168723 107170297 -36616158 - THE1B-int LTR MaLR 0 1580 1 2505 128 31 14 chr12 107170297 107170655 -36615800 - THE1B LTR MaLR 0 364 1 665 255 12 0 chr12 107170854 107171015 -36615440 + MIR SINE MIR 100 262 0 1672 190 10 10 chr12 107171161 107171472 -36614983 - AluJb SINE Alu -1 311 1 960 135 0 0 chr12 107171475 107171608 -36614847 - AluJb SINE Alu -179 133 1 23 0 0 0 chr12 107172318 107172341 -36614114 + AT_rich Low_complexity Low_complexity 1 23 0 461 333 83 27 chr12 107172838 107172909 -36613546 - L2 LINE L2 -6 3307 3241 1079 179 29 0 chr12 107172909 107173082 -36613373 - MER45A DNA AcHobo 0 178 1 461 333 83 27 chr12 107173082 107173174 -36613281 - L2 LINE L2 -72 3241 3156 2217 107 0 0 chr12 107173174 107173472 -36612983 + AluY SINE Alu 1 298 -13 461 333 83 27 chr12 107173472 107173784 -36612671 - L2 LINE L2 -157 3156 1976 2026 161 0 0 chr12 107173885 107174195 -36612260 - AluSx SINE Alu -2 310 1 2060 138 3 0 chr12 107174746 107175035 -36611420 + AluSx SINE Alu 1 290 -22 269 250 14 14 chr12 107175120 107175192 -36611263 + L2 LINE L2 3154 3225 -47 1929 154 3 13 chr12 107175697 107175996 -36610459 - AluJo SINE Alu -16 296 1 236 340 21 0 chr12 107176194 107176291 -36610164 + L2 LINE L2 3199 3297 -16 536 270 124 22 chr12 107176295 107176480 -36609975 - LTR16C LTR ERVL -79 412 209 229 200 0 0 chr12 107176661 107176706 -36609749 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr12 107176803 107176830 -36609625 + AT_rich Low_complexity Low_complexity 1 27 0 366 299 71 82 chr12 107176896 107176994 -36609461 + L1MC4a LINE L1 5346 5444 -718 2000 142 0 3 chr12 107176994 107177283 -36609172 + AluSx SINE Alu 1 288 -24 366 299 71 82 chr12 107177283 107177753 -36608702 + L1MC4a LINE L1 5444 5650 -512 946 224 0 0 chr12 107177753 107177914 -36608541 - FRAM SINE Alu -5 161 1 366 299 71 82 chr12 107177914 107178063 -36608392 + L1MC4a LINE L1 5650 5799 -363 7662 52 1 2 chr12 107178220 107179336 -36607119 + L1PA5 LINE L1 5036 6151 -3 581 279 58 16 chr12 107179443 107179633 -36606822 + MIR SINE MIR 6 203 -59 7030 84 4 0 chr12 107179884 107180289 -36606166 - L1PA10 LINE L1 -1 6167 5765 2225 98 0 43 chr12 107180289 107180321 -36606134 - AluSq SINE Alu 0 313 281 1095 92 23 0 chr12 107180321 107180495 -36605960 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2225 98 0 43 chr12 107180495 107180789 -36605666 - AluSq SINE Alu -32 281 1 7030 84 4 0 chr12 107180789 107181419 -36605036 - L1PA10 LINE L1 -403 5765 5148 738 176 0 24 chr12 107181425 107181550 -36604905 - FLAM_C SINE Alu -7 126 5 432 0 0 0 chr12 107181728 107181776 -36604679 + (CA)n Simple_repeat Simple_repeat 2 49 0 191 294 54 33 chr12 107182096 107182188 -36604267 + L2 LINE L2 2867 2960 -353 1872 97 127 4 chr12 107182914 107183181 -36603274 - AluSx SINE Alu -1 301 2 572 237 7 40 chr12 107183201 107183353 -36603102 + MIR SINE MIR 45 191 -71 2108 294 97 22 chr12 107183360 107184324 -36602131 + L2 LINE L2 1651 2686 -628 1057 122 0 0 chr12 107184339 107184486 -36601969 - AluSp SINE Alu -11 302 156 1340 89 0 0 chr12 107184521 107184689 -36601766 - AluSp SINE Alu -141 172 5 1782 155 21 24 chr12 107184714 107185004 -36601451 - AluJb SINE Alu -23 289 1 394 297 58 102 chr12 107185010 107185040 -36601415 + L2 LINE L2 2697 2727 -587 2026 141 44 39 chr12 107185040 107185403 -36601052 - MLT1A1 LTR MaLR 0 365 1 394 297 58 102 chr12 107185403 107185665 -36600790 + L2 LINE L2 2727 2976 -338 2036 142 7 0 chr12 107185783 107186092 -36600363 + AluSx SINE Alu 1 311 -1 611 263 31 12 chr12 107186929 107187089 -36599366 + MIR SINE MIR 16 178 -84 242 222 131 10 chr12 107188922 107189021 -36597434 + L1ME4a LINE L1 5976 6086 -35 370 217 67 163 chr12 107189413 107189538 -36596917 - L1MC4a LINE L1 -1899 5909 5774 1738 164 41 14 chr12 107189538 107189757 -36596698 - AluJb SINE Alu 0 312 111 189 0 0 0 chr12 107189757 107189778 -36596677 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1738 164 41 14 chr12 107189778 107189891 -36596564 - AluJb SINE Alu -201 111 3 370 217 67 163 chr12 107189891 107190078 -36596377 - L1MC4a LINE L1 -2034 5774 5627 1882 131 10 21 chr12 107190968 107191258 -36595197 - AluJo SINE Alu -25 287 1 1978 110 50 0 chr12 107191532 107191813 -36594642 + AluSx SINE Alu 1 295 -17 3972 199 55 14 chr12 107192622 107193553 -36592902 + L1MA9 LINE L1 5319 6287 -25 285 251 20 128 chr12 107193575 107193770 -36592685 + MER5B DNA MER1_type 3 176 -2 413 322 23 91 chr12 107194254 107194518 -36591937 + MIR SINE MIR 4 249 -13 2193 114 0 0 chr12 107194826 107195116 -36591339 + AluSq SINE Alu 1 290 -23 442 189 92 85 chr12 107195370 107195534 -36590921 - L1MC5 LINE L1 -34 7927 7763 1062 249 124 12 chr12 107195585 107196078 -36590377 - L1ME3A LINE L1 -2 6168 5551 339 336 42 14 chr12 107196949 107197092 -36589363 + L2 LINE L2 3126 3272 0 22 0 0 0 chr12 107197258 107197280 -36589175 + AT_rich Low_complexity Low_complexity 1 22 0 2396 84 3 3 chr12 107197366 107197664 -36588791 - AluSp SINE Alu -15 298 1 21 71 0 0 chr12 107197769 107197811 -36588644 + AT_rich Low_complexity Low_complexity 1 42 0 1733 168 3 19 chr12 107197945 107198254 -36588201 - AluSx SINE Alu -8 304 1 247 272 98 0 chr12 107199056 107199148 -36587307 - MER117 DNA MER1_type -48 149 49 1067 246 20 4 chr12 107199266 107199518 -36586937 + MIR SINE MIR 3 258 -4 809 133 0 59 chr12 107199519 107199654 -36586801 + FLAM_C SINE Alu 1 127 -16 2066 121 7 10 chr12 107199685 107199992 -36586463 - AluSg SINE Alu -4 306 1 6553 87 29 6 chr12 107200001 107200206 -36586249 - L1PA14 LINE L1 0 6161 5962 2168 128 3 7 chr12 107200206 107200511 -36585944 - AluSx SINE Alu -8 304 1 6553 87 29 6 chr12 107200511 107201264 -36585191 - L1PA14 LINE L1 -199 5962 5227 593 261 26 88 chr12 107201748 107202024 -36584431 - MIR SINE MIR -8 254 4 261 277 15 0 chr12 107202373 107202438 -36584017 - Charlie8 DNA MER1_type -990 1427 1362 238 347 0 13 chr12 107202551 107202626 -36583829 - Charlie8 DNA MER1_type -2343 74 1 194 354 48 34 chr12 107202729 107202876 -36583579 - L2 LINE L2 -206 3066 2918 198 417 7 7 chr12 107203179 107203318 -36583137 + L3b LINE CR1 1119 1257 -326 2247 122 0 3 chr12 107203715 107204026 -36582429 - AluSx SINE Alu -2 310 1 218 347 84 21 chr12 107204369 107204559 -36581896 - L2 LINE L2 -1034 2280 2079 2596 122 14 3 chr12 107204635 107204995 -36581460 - THE1B LTR MaLR 0 364 1 1172 235 67 75 chr12 107205005 107205039 -36581416 - Charlie2 DNA MER1_type 0 2862 2829 2001 179 22 16 chr12 107205039 107205407 -36581048 + MLT1A2 LTR MaLR 1 370 -4 1172 235 67 75 chr12 107205407 107205997 -36580458 - Charlie2 DNA MER1_type -33 2829 2243 1734 25 0 0 chr12 107205997 107206194 -36580261 - L1PA2 LINE L1 -1164 4982 4786 8377 11 1 2 chr12 107206194 107207365 -36579090 + L1PA2 LINE L1 4983 6152 -3 227 53 0 26 chr12 107207375 107207413 -36579042 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 7675 221 34 33 chr12 107207482 107209651 -36576804 + L1M4 LINE L1 2318 4487 -1659 1879 167 6 13 chr12 107209815 107210126 -36576329 - AluJb SINE Alu -3 309 1 316 303 34 0 chr12 107210126 107210245 -36576210 + L1M4 LINE L1 2865 2987 -3159 21 71 0 0 chr12 107211011 107211053 -36575402 + AT_rich Low_complexity Low_complexity 1 42 0 428 281 24 92 chr12 107211180 107211475 -36574980 + L1MC4a LINE L1 5688 5962 -159 1021 283 130 16 chr12 107211638 107211836 -36574619 + MLT1J LTR MaLR 7 181 -330 1041 89 0 0 chr12 107211836 107211982 -36574473 + (TTCTCC)n Simple_repeat Simple_repeat 3 148 0 1021 283 130 16 chr12 107211982 107212236 -36574219 + MLT1J LTR MaLR 181 511 0 512 314 19 0 chr12 107212820 107212998 -36573457 - MIR3 SINE MIR -6 202 20 812 170 7 0 chr12 107213635 107213776 -36572679 - FLAM_C SINE Alu -1 142 1 1138 172 12 16 chr12 107213786 107214030 -36572425 - L1MB7 LINE L1 -54 6130 5888 2067 93 7 4 chr12 107214051 107214321 -36572134 - AluSp SINE Alu -29 284 14 479 148 3 0 chr12 107214351 107214443 -36572012 - L1MB8 LINE L1 -286 5892 5811 37 39 0 0 chr12 107216037 107216088 -36570367 + AT_rich Low_complexity Low_complexity 1 51 0 2185 130 0 0 chr12 107218098 107218406 -36568049 - AluSx SINE Alu -4 308 1 1826 171 0 25 chr12 107218653 107218968 -36567487 - AluJb SINE Alu -5 307 1 189 0 0 0 chr12 107219393 107219414 -36567041 + (TTG)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr12 107220703 107220749 -36565706 + AT_rich Low_complexity Low_complexity 1 46 0 434 219 45 101 chr12 107222164 107222294 -36564161 + MIR SINE MIR 77 196 -66 2300 111 0 7 chr12 107222294 107222601 -36563854 - AluSx SINE Alu -5 307 3 434 219 45 101 chr12 107222601 107222648 -36563807 + MIR SINE MIR 196 244 -18 2429 77 3 3 chr12 107223149 107223449 -36563006 + AluSp SINE Alu 1 300 -13 1726 169 40 0 chr12 107223749 107224021 -36562434 + AluJb SINE Alu 4 286 -26 464 214 107 8 chr12 107224981 107225112 -36561343 + MER96 DNA MER1_type? 32 175 0 391 161 37 0 chr12 107225490 107225571 -36560884 - Charlie1 DNA MER1_type 0 2761 2678 2114 137 0 3 chr12 107225665 107225972 -36560483 + AluSq SINE Alu 1 306 -7 1878 151 10 10 chr12 107225999 107226290 -36560165 + AluJb SINE Alu 1 291 -21 297 0 0 0 chr12 107226290 107226323 -36560132 + (CA)n Simple_repeat Simple_repeat 2 34 0 908 228 47 14 chr12 107226323 107226534 -36559921 - Charlie1 DNA MER1_type -2542 219 2 821 153 0 29 chr12 107226553 107226690 -36559765 - FLAM_C SINE Alu 0 133 1 1582 184 58 3 chr12 107226913 107227207 -36559248 - AluSx SINE Alu -2 310 1 25 0 0 0 chr12 107227605 107227630 -36558825 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr12 107227866 107227892 -36558563 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 299 180 98 0 chr12 107229300 107229361 -36557094 + MER5A DNA MER1_type 9 75 -114 1228 189 49 12 chr12 107229386 107229629 -36556826 - AluJb SINE Alu -20 292 41 220 304 196 0 chr12 107229647 107229749 -36556706 + MER5A DNA MER1_type 62 183 -6 216 286 98 27 chr12 107230663 107230775 -36555680 - MIR SINE MIR -29 233 114 403 255 176 13 chr12 107230946 107231099 -36555356 + MIR SINE MIR 21 198 -64 2513 82 0 0 chr12 107231883 107232188 -36554267 + AluSc SINE Alu 1 305 -4 547 290 129 5 chr12 107232265 107232458 -36553997 - MIR SINE MIR -12 250 34 221 0 35 0 chr12 107234412 107234441 -36552014 + (GA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr12 107235742 107235767 -36550688 + GC_rich Low_complexity Low_complexity 1 25 0 691 167 0 0 chr12 107235976 107236090 -36550365 - FRAM SINE Alu -1 175 62 363 23 0 0 chr12 107238941 107238985 -36547470 + (TG)n Simple_repeat Simple_repeat 2 45 0 229 318 32 0 chr12 107239535 107239598 -36546857 + L2 LINE L2 3247 3311 -2 195 42 0 0 chr12 107240128 107240152 -36546303 + (CTTG)n Simple_repeat Simple_repeat 4 27 0 276 246 16 0 chr12 107240469 107240530 -36545925 - L2 LINE L2 -4 3268 3207 441 299 69 45 chr12 107240586 107240877 -36545578 - MARNA DNA Mariner -241 345 48 29 28 0 0 chr12 107241140 107241176 -36545279 + AT_rich Low_complexity Low_complexity 1 36 0 2099 142 0 19 chr12 107242539 107242856 -36543599 + AluSx SINE Alu 1 311 -1 2102 132 0 10 chr12 107243140 107243443 -36543012 + AluSx SINE Alu 1 300 -12 502 52 0 39 chr12 107243454 107243531 -36542924 + L1MA4A LINE L1 6219 6292 -11 28 29 0 0 chr12 107244310 107244345 -36542110 + AT_rich Low_complexity Low_complexity 1 35 0 833 175 4 159 chr12 107244575 107244826 -36541629 - AluJo SINE Alu -13 299 88 24 0 0 0 chr12 107245269 107245293 -36541162 + AT_rich Low_complexity Low_complexity 1 24 0 2415 68 7 13 chr12 107245891 107246199 -36540256 + AluSq SINE Alu 2 307 -6 2278 107 0 0 chr12 107247330 107247629 -36538826 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 107248277 107248299 -36538156 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 329 314 0 0 chr12 107248331 107248417 -36538038 - L2 LINE L2 -22 3291 3206 2155 115 0 0 chr12 107249677 107249973 -36536482 + AluSx SINE Alu 1 296 -16 2280 151 18 3 chr12 107249975 107250366 -36536089 - L1MB5 LINE L1 -9 6165 5769 588 272 54 0 chr12 107250417 107250564 -36535891 + MIR SINE MIR 10 164 -98 242 258 10 21 chr12 107251274 107251371 -36535084 + (TA)n Simple_repeat Simple_repeat 2 97 0 1248 98 0 0 chr12 107252235 107252399 -36534056 - AluSg SINE Alu -146 164 1 447 316 115 69 chr12 107252399 107252771 -36533684 - L3 LINE CR1 -197 1380 984 1964 150 0 17 chr12 107252771 107253071 -36533384 + AluSx SINE Alu 1 295 -17 447 316 115 69 chr12 107253071 107253134 -36533321 - L3 LINE CR1 -593 984 925 235 340 21 11 chr12 107253742 107253836 -36532619 + MER5B DNA MER1_type 75 169 -9 21 0 0 0 chr12 107255006 107255027 -36531428 + AT_rich Low_complexity Low_complexity 1 21 0 443 256 23 17 chr12 107256699 107256871 -36529584 - MER104 DNA MER2_type -3 177 5 22 35 0 0 chr12 107257164 107257193 -36529262 + AT_rich Low_complexity Low_complexity 1 29 0 450 235 20 0 chr12 107257559 107257661 -36528794 - MIR SINE MIR -62 146 43 576 264 75 17 chr12 107257938 107258112 -36528343 + MIR SINE MIR 49 232 -30 197 73 0 73 chr12 107259562 107259589 -36526866 + (CATATA)n Simple_repeat Simple_repeat 2 27 -12 2108 125 10 10 chr12 107259589 107259886 -36526569 - AluJb SINE Alu -15 297 1 197 73 0 73 chr12 107259886 107259899 -36526556 + (CATATA)n Simple_repeat Simple_repeat 27 39 0 2102 109 11 0 chr12 107260437 107260713 -36525742 + AluSx SINE Alu 31 309 -3 22 0 0 0 chr12 107261402 107261424 -36525031 + AT_rich Low_complexity Low_complexity 1 22 0 2190 123 0 7 chr12 107263603 107263913 -36522542 - AluSx SINE Alu -4 308 1 21 36 0 0 chr12 107264667 107264695 -36521760 + AT_rich Low_complexity Low_complexity 1 28 0 1752 135 32 0 chr12 107265942 107266223 -36520232 + AluJo SINE Alu 2 291 -21 225 0 0 0 chr12 107267152 107267177 -36519278 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1905 177 3 0 chr12 107267184 107267484 -36518971 + AluSx SINE Alu 4 304 -8 278 290 0 40 chr12 107267794 107267918 -36518537 + L1MC/D LINE L1 5351 5469 -2339 248 343 86 0 chr12 107268698 107268803 -36517652 - L2 LINE L2 0 3313 3200 2778 89 0 18 chr12 107269888 107270268 -36516187 - THE1C LTR MaLR -2 373 1 1499 185 25 7 chr12 107271240 107271526 -36514929 + AluJb SINE Alu 1 291 -21 342 67 0 0 chr12 107272107 107272152 -36514303 + (TC)n Simple_repeat Simple_repeat 1 45 0 209 189 0 0 chr12 107272846 107272883 -36513572 + (CA)n Simple_repeat Simple_repeat 1 37 0 475 354 16 0 chr12 107273243 107273435 -36513020 - L2 LINE L2 -313 3000 2806 1891 127 7 14 chr12 107273503 107273795 -36512660 + AluSx SINE Alu 1 290 -22 27 29 0 0 chr12 107273795 107273829 -36512626 + AT_rich Low_complexity Low_complexity 1 34 0 3376 225 39 78 chr12 107273829 107275025 -36511430 + L1MEc LINE L1 233 1382 -5225 743 179 60 0 chr12 107275050 107275201 -36511254 + L1MEc LINE L1 19 178 -6248 * 6027 217 49 21 chr12 107275196 107277491 -36508964 + L1MEc LINE L1 1569 4053 -2373 1970 30 17 8 chr12 107277491 107277728 -36508727 + AluY SINE Alu 62 300 -11 6027 217 49 21 chr12 107277728 107278229 -36508226 + L1MEc LINE L1 4053 4538 -1888 22 0 0 0 chr12 107278255 107278277 -36508178 + AT_rich Low_complexity Low_complexity 1 22 0 201 226 0 0 chr12 107278597 107278650 -36507805 + A-rich Low_complexity Low_complexity 1 53 0 504 200 147 13 chr12 107278947 107279097 -36507358 + MIR SINE MIR 49 218 -44 180 261 0 0 chr12 107279471 107279536 -36506919 + CT-rich Low_complexity Low_complexity 2 66 0 2145 126 35 41 chr12 107280228 107280594 -36505861 - THE1B LTR MaLR 0 364 1 2137 131 0 25 chr12 107281185 107281505 -36504950 + AluSx SINE Alu 1 312 0 188 119 0 48 chr12 107284746 107284788 -36501667 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 194 152 0 43 chr12 107286053 107286099 -36500356 + CT-rich Low_complexity Low_complexity 5 48 0 459 52 0 0 chr12 107286464 107286522 -36499933 + (CA)n Simple_repeat Simple_repeat 1 58 0 226 174 0 43 chr12 107287703 107287749 -36498706 - L1M2b LINE L1 -7016 193 150 853 264 4 25 chr12 107287808 107288043 -36498412 + Charlie1a DNA MER1_type 50 279 -1176 2080 94 4 14 chr12 107288043 107288319 -36498136 - AluSq SINE Alu -16 297 25 1729 166 4 0 chr12 107289257 107289522 -36496933 + AluJb SINE Alu 35 300 -12 1944 178 30 0 chr12 107289949 107290347 -36496108 + L1MA8 LINE L1 5882 6291 0 28 29 0 0 chr12 107290451 107290486 -36495969 + AT_rich Low_complexity Low_complexity 1 35 0 619 155 0 0 chr12 107290790 107290887 -36495568 + AluJ/FLAM SINE Alu 1 97 -215 1037 121 30 81 chr12 107290995 107291193 -36495262 - MLT2A1 LTR ERVL -256 188 1 990 149 6 0 chr12 107291261 107291422 -36495033 - L1M2 LINE L1 -599 5692 5531 704 177 33 6 chr12 107291425 107291606 -36494849 + L1MA7 LINE L1 6106 6291 0 558 114 11 0 chr12 107292275 107292363 -36494092 + AluSg/x SINE Alu 208 296 -16 563 204 9 30 chr12 107293147 107293376 -36493079 + CT-rich Low_complexity Low_complexity 1 224 0 326 206 5 27 chr12 107293387 107293573 -36492882 + CT-rich Low_complexity Low_complexity 1 181 0 638 230 51 43 chr12 107294067 107294769 -36491686 - L1MA4A LINE L1 0 6180 5597 1235 154 14 19 chr12 107294769 107294983 -36491472 - AluJb SINE Alu 0 312 100 1278 145 10 10 chr12 107294983 107295190 -36491265 + MLT1A1 LTR MaLR 157 363 -2 302 275 6 22 chr12 107296645 107296823 -36489632 + GA-rich Low_complexity Low_complexity 3 177 0 299 269 11 0 chr12 107298241 107298334 -36488121 + (TG)n Simple_repeat Simple_repeat 1 94 0 2669 174 42 29 chr12 107298363 107298951 -36487504 + LTR8A LTR ERV1 11 606 -121 2727 124 29 45 chr12 107298951 107299442 -36487013 - MER41B LTR ERV1 0 635 153 564 105 47 0 chr12 107299547 107299633 -36486822 + MLT1A2 LTR MaLR 285 374 0 197 159 23 0 chr12 107300945 107300989 -36485466 + (TA)n Simple_repeat Simple_repeat 1 45 0 211 196 18 27 chr12 107301134 107301246 -36485209 + (TA)n Simple_repeat Simple_repeat 1 111 0 267 103 0 0 chr12 107301246 107301285 -36485170 + (GA)n Simple_repeat Simple_repeat 2 40 0 2059 119 7 3 chr12 107304167 107304461 -36481994 - AluSg SINE Alu -14 296 2 615 105 29 19 chr12 107304822 107304927 -36481528 - AluSq/x SINE Alu -206 106 1 453 131 12 0 chr12 107304931 107305015 -36481440 - L1MA2 LINE L1 -164 6140 6056 209 200 0 0 chr12 107305312 107305352 -36481103 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chr12 107305933 107306336 -36480119 - L1PB1 LINE L1 -1 6150 5746 641 164 9 0 chr12 107306856 107306966 -36479489 + Tigger5 DNA MER2_type 2212 2322 -1 1294 188 9 75 chr12 107306967 107307235 -36479220 + MLT1A1 LTR MaLR 68 313 -52 1906 169 50 14 chr12 107307235 107307597 -36478858 - THE1C LTR MaLR 0 375 1 1294 188 9 75 chr12 107307597 107307647 -36478808 + MLT1A1 LTR MaLR 313 365 0 843 186 0 19 chr12 107308351 107308512 -36477943 - AluJo/FRAM SINE Alu -19 293 136 1815 152 17 10 chr12 107308513 107308815 -36477640 - AluSx SINE Alu -8 304 1 385 327 62 29 chr12 107309524 107309799 -36476656 + L2 LINE L2 713 996 -2318 529 219 41 0 chr12 107310640 107310763 -36475692 + MLT1A2 LTR MaLR 1 128 -246 2101 158 127 10 chr12 107310869 107311287 -36475168 + LTR1B LTR ERV1 360 826 0 911 225 23 97 chr12 107311288 107311630 -36474825 - L1ME LINE L1 -553 5613 5297 1187 270 31 24 chr12 107311698 107312113 -36474342 - L1MD3 LINE L1 -59 7936 7519 540 116 49 6 chr12 107312118 107312282 -36474173 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 295 154 31 74 chr12 107312285 107312447 -36474008 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 * 303 174 72 14 chr12 107312345 107312483 -36473972 + (TA)n Simple_repeat Simple_repeat 2 147 0 372 210 34 118 chr12 107312492 107312559 -36473896 - Tigger2 DNA MER2_type 0 2718 2664 2058 118 3 3 chr12 107312559 107312846 -36473609 + AluSx SINE Alu 1 287 -25 372 210 34 118 chr12 107312846 107312897 -36473558 - Tigger2 DNA MER2_type -54 2664 2610 332 172 0 0 chr12 107312897 107312955 -36473500 - Tigger2 DNA MER2_type -2660 58 1 300 293 28 19 chr12 107314231 107314337 -36472118 + GA-rich Low_complexity Low_complexity 1 107 0 1849 141 7 3 chr12 107314882 107315166 -36471289 - AluSx SINE Alu -27 285 1 933 183 48 65 chr12 107315166 107315456 -36470999 - L1MB3 LINE L1 -41 6142 5858 1062 231 22 19 chr12 107315647 107315963 -36470492 - MLT1C LTR MaLR -2 465 149 2404 80 17 0 chr12 107315963 107316313 -36470142 - L1PB1 LINE L1 -25 6126 5771 753 198 19 0 chr12 107316313 107316475 -36469980 - MLT1C LTR MaLR -300 167 3 1304 148 65 0 chr12 107316558 107316774 -36469681 - MER30 DNA MER1_type 0 230 1 223 276 9 95 chr12 107317148 107317264 -36469191 - MIR SINE MIR -70 192 87 2028 137 3 3 chr12 107317490 107317796 -36468659 - AluSx SINE Alu -6 306 1 880 249 48 16 chr12 107317951 107318260 -36468195 + L1ME1 LINE L1 5843 6161 -5 901 70 25 13 chr12 107318373 107318530 -36467925 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chr12 107318546 107318858 -36467597 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chr12 107318882 107319226 -36467229 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 1870 183 99 2 chr12 107320011 107320405 -36466050 - MSTB1 LTR MaLR 0 432 1 2392 78 7 0 chr12 107321061 107321420 -36465035 - AluY SINE Alu 0 361 1 213 94 0 0 chr12 107321498 107321530 -36464925 + (CA)n Simple_repeat Simple_repeat 2 33 0 1474 161 7 4 chr12 107321879 107322152 -36464303 - L1MC1 LINE L1 -10 6323 6050 242 293 36 62 chr12 107322977 107323070 -36463385 - L1MCc LINE L1 -6186 237 143 1676 200 37 115 chr12 107323070 107323341 -36463114 - MLT2B3 LTR ERVL 0 554 353 2060 132 0 21 chr12 107323341 107323667 -36462788 + AluSx SINE Alu 1 320 0 1676 200 37 115 chr12 107323667 107323995 -36462460 - MLT2B3 LTR ERVL -201 353 1 242 293 36 62 chr12 107323995 107324126 -36462329 - L1MCc LINE L1 -6280 143 19 527 273 42 24 chr12 107325465 107325630 -36460825 + MER5B DNA MER1_type 6 173 -5 1013 76 25 25 chr12 107325852 107326010 -36460445 - AluSc SINE Alu -18 291 134 249 260 0 0 chr12 107326634 107326711 -36459744 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 350 256 33 11 chr12 107326718 107326808 -36459647 - L1MC4 LINE L1 -1339 6703 6612 373 94 44 44 chr12 107326808 107326967 -36459488 + (TA)n Simple_repeat Simple_repeat 2 160 0 591 200 0 0 chr12 107327065 107327200 -36459255 - L1MB4 LINE L1 -2 6178 6044 24 0 0 0 chr12 107327214 107327238 -36459217 + AT_rich Low_complexity Low_complexity 1 24 0 251 173 36 0 chr12 107327238 107327348 -36459107 + (TA)n Simple_repeat Simple_repeat 2 115 0 36 76 0 0 chr12 107327361 107327427 -36459028 + AT_rich Low_complexity Low_complexity 1 66 0 1991 104 10 52 chr12 107327709 107328017 -36458438 + AluSc SINE Alu 1 295 -14 180 0 0 0 chr12 107328225 107328245 -36458210 + (T)n Simple_repeat Simple_repeat 1 20 0 390 239 0 46 chr12 107328379 107328488 -36457967 - L1M3 LINE L1 -556 5624 5521 461 194 19 9 chr12 107328499 107328607 -36457848 + L1MB7 LINE L1 5853 5961 -223 24 32 0 0 chr12 107328984 107329015 -36457440 + AT_rich Low_complexity Low_complexity 1 31 0 952 137 256 64 chr12 107329225 107329538 -36456917 + MLT1A2 LTR MaLR 1 373 -1 32 26 0 0 chr12 107329576 107329615 -36456840 + AT_rich Low_complexity Low_complexity 1 39 0 213 221 52 52 chr12 107330729 107330806 -36455649 + MIR SINE MIR 131 207 -55 336 48 0 0 chr12 107331612 107331654 -36454801 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chr12 107331921 107331982 -36454473 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chr12 107331986 107332170 -36454285 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 270 0 12 chr12 107332079 107332377 -36454078 + (TA)n Simple_repeat Simple_repeat 1 294 0 416 281 6 0 chr12 107332392 107332570 -36453885 + (TA)n Simple_repeat Simple_repeat 2 180 0 382 247 0 48 chr12 107332551 107332737 -36453718 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chr12 107332746 107332915 -36453540 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chr12 107332919 107333294 -36453161 - MER7A DNA MER2_type 0 346 2 2053 162 80 15 chr12 107333341 107333743 -36452712 + MSTA LTR MaLR 1 428 0 308 225 0 11 chr12 107334387 107334476 -36451979 + CT-rich Low_complexity Low_complexity 4 91 0 1074 92 17 6 chr12 107334487 107334661 -36451794 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 863 124 16 0 chr12 107334661 107334782 -36451673 - AluSg/x SINE Alu -32 280 158 1151 214 105 3 chr12 107335493 107335778 -36450677 - MER7A DNA MER2_type 0 346 35 4064 71 2 42 chr12 107336503 107337080 -36449375 + MER41A LTR ERV1 1 554 0 34 55 0 0 chr12 107337117 107337172 -36449283 + AT_rich Low_complexity Low_complexity 1 55 0 1191 194 24 24 chr12 107337172 107337465 -36448990 - L1MA7 LINE L1 -1 6290 5998 290 266 37 0 chr12 107338274 107338383 -36448072 + MLT1I LTR MaLR 297 409 0 2629 106 0 8 chr12 107338419 107338786 -36447669 + THE1B LTR MaLR 1 364 0 1802 174 8 8 chr12 107339068 107339417 -36447038 + MLT1A1 LTR MaLR 1 349 -16 1115 130 24 23 chr12 107339417 107339722 -36446733 - MLT2A2 LTR ERVL 0 453 248 760 177 13 102 chr12 107339823 107339918 -36446537 - L1MA9 LINE L1 -267 6045 5943 2458 191 130 20 chr12 107339918 107340572 -36445883 + LTR8A LTR ERV1 2 727 0 2344 66 7 3 chr12 107340573 107340874 -36445581 - AluY SINE Alu -9 302 1 760 177 13 102 chr12 107340874 107341002 -36445453 - L1MA9 LINE L1 -368 5944 5840 5417 68 4 1 chr12 107341130 107341819 -36444636 + LTR8 LTR ERV1 1 691 0 2013 116 84 66 chr12 107342024 107342464 -36443991 - LTR7 LTR ERV1 -2 448 1 2657 69 5 13 chr12 107342464 107342857 -36443598 - HERVH LTR ERV1 0 7713 7324 1069 184 38 0 chr12 107342857 107343069 -36443386 - HERVH LTR ERV1 -1894 5819 5600 467 183 122 13 chr12 107343073 107343303 -36443152 - HERVH LTR ERV1 -2567 5146 4892 1869 246 35 42 chr12 107343798 107344518 -36441937 - L1MEc LINE L1 -1767 4448 3734 1798 271 52 18 chr12 107344519 107344723 -36441732 - L1MEc LINE L1 -2375 3840 3644 1688 215 18 3 chr12 107344723 107345105 -36441350 + MLT1B LTR MaLR 3 390 0 1798 271 52 18 chr12 107345105 107345861 -36440594 - L1MEc LINE L1 -2571 3644 2847 1266 185 83 33 chr12 107345880 107346242 -36440213 - LTR25 LTR ERV1 0 794 415 269 175 143 0 chr12 107346213 107346276 -36440179 - MER51A LTR ERV1 -354 280 209 * 388 161 0 119 chr12 107346408 107346526 -36439929 - MER61E LTR ERV1 -461 108 5 1344 281 21 24 chr12 107346535 107347285 -36439170 - L1MEc LINE L1 -3372 2843 2134 11033 85 8 10 chr12 107347402 107349051 -36437404 + HERVH LTR ERV1 1342 2987 -4726 817 149 20 0 chr12 107349045 107349193 -36437262 + HERVH LTR ERV1 3140 3290 -4423 * 801 180 13 7 chr12 107349183 107349333 -36437122 + HERVH LTR ERV1 3492 3642 -4071 * 503 196 10 0 chr12 107349866 107349963 -36436492 - MER90 LTR ERV1 0 575 478 670 219 38 65 chr12 107349963 107350255 -36436200 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chr12 107350341 107350478 -36435977 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chr12 107350521 107350648 -36435807 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chr12 107350688 107350832 -36435623 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chr12 107350836 107350888 -36435567 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chr12 107351050 107351362 -36435093 + AluSx SINE Alu 1 293 -19 312 27 0 0 chr12 107351394 107351431 -36435024 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr12 107351441 107351464 -36434991 + AT_rich Low_complexity Low_complexity 1 23 0 182 362 32 11 chr12 107351954 107352048 -36434407 - L2 LINE L2 -501 2813 2718 387 60 0 0 chr12 107352151 107352201 -36434254 + (TA)n Simple_repeat Simple_repeat 2 51 0 382 110 41 0 chr12 107352201 107352274 -36434181 - L1PB3 LINE L1 -9 6145 6070 616 202 6 52 chr12 107354146 107354319 -36432136 - MER20 DNA MER1_type -25 194 30 490 293 21 21 chr12 107354403 107354591 -36431864 + MER5A DNA MER1_type 2 189 0 1635 196 3 10 chr12 107354677 107355030 -36431425 + AluJo SINE Alu 1 534 -59 1185 0 22 39 chr12 107355030 107355212 -36431243 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1635 196 3 10 chr12 107355212 107355272 -36431183 + AluJo SINE Alu 534 593 0 288 0 0 0 chr12 107355595 107355627 -36430828 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chr12 107355952 107356090 -36430365 + CT-rich Low_complexity Low_complexity 1 135 0 1625 139 8 11 chr12 107356255 107356521 -36429934 - AluJb SINE Alu -20 292 28 32 0 0 0 chr12 107356524 107356556 -36429899 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 107357025 107357055 -36429400 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chr12 107357079 107357117 -36429338 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1910 118 59 0 chr12 107357600 107357931 -36428524 + AluSx SINE Alu 1 347 0 322 371 40 7 chr12 107358484 107358635 -36427820 - MIR SINE MIR -12 250 95 230 200 24 24 chr12 107359561 107359646 -36426809 + L1MC4 LINE L1 6619 6703 -1339 207 232 0 18 chr12 107359647 107359731 -36426724 + (TA)n Simple_repeat Simple_repeat 1 82 0 2237 107 0 7 chr12 107359791 107360101 -36426354 - AluSc SINE Alu -1 308 1 3254 104 16 22 chr12 107360398 107360908 -36425547 - MER84 LTR ERV1 0 507 1 919 270 39 32 chr12 107361303 107361710 -36424745 - L1M4 LINE L1 -2986 3160 2748 1991 142 53 11 chr12 107361710 107362070 -36424385 + THE1C LTR MaLR 1 375 0 919 270 39 32 chr12 107362070 107362128 -36424327 - L1M4 LINE L1 -3398 2748 2692 1507 277 59 71 chr12 107362135 107363322 -36423133 + L1MEc LINE L1 718 1891 -4505 236 206 103 21 chr12 107363349 107363446 -36423009 + L1MEc LINE L1 1826 1930 -4466 505 198 38 0 chr12 107363552 107363658 -36422797 - MER47A DNA MER2_type -226 140 31 461 118 0 15 chr12 107363672 107363740 -36422715 - MLT1A2 LTR MaLR -304 70 4 489 286 14 32 chr12 107364047 107364264 -36422191 - L1ME LINE L1 -443 5788 5576 1604 178 0 44 chr12 107364366 107364687 -36421768 + AluJo SINE Alu 1 307 -5 326 322 61 20 chr12 107364729 107365024 -36421431 - L1ME LINE L1 -2133 4082 3776 1178 78 0 0 chr12 107365027 107365169 -36421286 - AluSp/q SINE Alu -16 297 156 201 74 0 0 chr12 107365275 107365302 -36421153 + (T)n Simple_repeat Simple_repeat 1 27 0 378 265 48 48 chr12 107365490 107365720 -36420735 - L1ME LINE L1 -2806 3409 3180 1705 201 0 3 chr12 107365771 107366074 -36420381 - AluJb SINE Alu -10 302 1 403 296 58 50 chr12 107366075 107366352 -36420103 - L1ME LINE L1 -3061 3154 2876 829 268 91 21 chr12 107366912 107367285 -36419170 + MER50 LTR ERV1 10 408 -326 1556 214 0 10 chr12 107367907 107368216 -36418239 + AluJo SINE Alu 1 306 -6 751 161 0 23 chr12 107369258 107369388 -36417067 + FRAM SINE Alu 47 173 -3 449 152 25 0 chr12 107369393 107369472 -36416983 + AluJo SINE Alu 56 136 -176 22 0 0 0 chr12 107371392 107371414 -36415041 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr12 107371542 107371584 -36414871 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 107371641 107371662 -36414793 + AT_rich Low_complexity Low_complexity 1 21 0 1419 272 44 15 chr12 107371736 107372542 -36413913 - L1MEc LINE L1 -3379 2836 2048 684 194 35 97 chr12 107374977 107375010 -36411445 + Charlie1 DNA MER1_type 1586 1619 -1142 1873 153 10 7 chr12 107375010 107375311 -36411144 + AluJb SINE Alu 6 307 -5 684 194 35 97 chr12 107375311 107375504 -36410951 + Charlie1 DNA MER1_type 1619 1798 -963 2202 106 27 0 chr12 107375854 107376155 -36410300 + AluSx SINE Alu 1 309 -3 288 0 0 0 chr12 107376323 107376355 -36410100 + (CA)n Simple_repeat Simple_repeat 1 32 0 1265 140 0 42 chr12 107377252 107377466 -36408989 + MER3 DNA MER1_type 1 205 -4 468 117 0 0 chr12 107377500 107377577 -36408878 + (CA)n Simple_repeat Simple_repeat 2 78 0 434 262 47 42 chr12 107378106 107378297 -36408158 - MIR SINE MIR -70 192 1 2016 123 10 3 chr12 107378765 107379057 -36407398 + AluSq SINE Alu 1 294 -19 598 212 152 12 chr12 107379112 107379277 -36407178 - MIR SINE MIR -74 188 1 358 267 197 4 chr12 107379303 107379457 -36406998 + MIR SINE MIR 38 232 -30 22 56 0 0 chr12 107379934 107379970 -36406485 + AT_rich Low_complexity Low_complexity 1 36 0 2250 117 0 0 chr12 107379970 107380260 -36406195 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr12 107380555 107380578 -36405877 + AT_rich Low_complexity Low_complexity 1 23 0 1906 158 23 0 chr12 107380786 107381090 -36405365 + AluSx SINE Alu 1 311 -1 272 292 13 77 chr12 107381748 107381938 -36404517 + MIR3 SINE MIR 9 191 -61 1452 91 101 0 chr12 107382181 107382390 -36404065 - MER30 DNA MER1_type 0 230 1 319 200 0 29 chr12 107382429 107382499 -36403956 - MIR SINE MIR -63 145 85 1001 148 0 0 chr12 107382509 107382651 -36403804 + AluSg/x SINE Alu 151 292 -18 1962 157 14 0 chr12 107382673 107382967 -36403488 + AluJo SINE Alu 1 298 -14 263 214 18 0 chr12 107383083 107383139 -36403316 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2030 114 45 0 chr12 107385081 107385370 -36401085 + AluSx SINE Alu 3 304 -8 265 313 15 15 chr12 107385416 107385550 -36400905 - L2 LINE L2 -970 2344 2211 360 134 31 28 chr12 107386069 107386093 -36400362 - L1MA9 LINE L1 -188 6103 6081 405 234 0 0 chr12 107386093 107386200 -36400255 - L1MA7 LINE L1 -7 6284 6178 360 134 31 28 chr12 107386200 107386262 -36400193 - L1MA9 LINE L1 -210 6081 6022 216 0 0 0 chr12 107387754 107387778 -36398677 + (TA)n Simple_repeat Simple_repeat 2 25 0 261 140 0 0 chr12 107388021 107388078 -36398377 + (C)n Simple_repeat Simple_repeat 1 57 0 29 0 0 0 chr12 107388457 107388486 -36397969 + AT_rich Low_complexity Low_complexity 1 29 0 2552 53 0 3 chr12 107388599 107388898 -36397557 + AluSc SINE Alu 1 298 -11 263 274 172 0 chr12 107389052 107389209 -36397246 - L2 LINE L2 -606 2708 2525 2314 102 0 10 chr12 107389268 107389582 -36396873 + AluSx SINE Alu 1 311 -1 2327 118 0 0 chr12 107389685 107389990 -36396465 - AluSq SINE Alu -8 305 1 435 93 0 35 chr12 107390088 107390174 -36396281 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 201 139 0 0 chr12 107390164 107390207 -36396248 + (TTCTC)n Simple_repeat Simple_repeat 5 47 0 * 400 139 63 0 chr12 107390207 107390286 -36396169 - LTR9 LTR ERV1 -91 521 438 2020 143 6 19 chr12 107390545 107390860 -36395595 + AluJb SINE Alu 1 311 -1 2175 101 3 7 chr12 107391216 107391504 -36394951 + AluSq SINE Alu 1 287 -26 2206 112 0 26 chr12 107391808 107392121 -36394334 + AluSx SINE Alu 1 305 -7 2258 114 3 0 chr12 107392485 107392783 -36393672 - AluSq SINE Alu -14 299 1 359 267 123 27 chr12 107393272 107393418 -36393037 - MIR SINE MIR -95 167 8 375 273 124 8 chr12 107393657 107393778 -36392677 - L2 LINE L2 -7 3306 3172 2204 109 10 3 chr12 107393819 107394121 -36392334 + AluSx SINE Alu 1 304 -8 2008 89 75 4 chr12 107394433 107394713 -36391742 + AluSp SINE Alu 1 300 -13 1614 158 67 7 chr12 107395255 107395539 -36390916 - AluJb SINE Alu -8 304 4 2355 96 3 13 chr12 107395684 107395996 -36390459 - AluSc SINE Alu 0 309 1 2392 67 10 7 chr12 107396035 107396333 -36390122 + AluSq SINE Alu 2 300 -13 1349 265 58 60 chr12 107396460 107397082 -36389373 - L1MC4a LINE L1 -1826 5982 5362 2609 26 33 7 chr12 107397238 107397540 -36388915 + AluY SINE Alu 1 310 -1 726 235 44 107 chr12 107397734 107398146 -36388309 - L2 LINE L2 -99 3214 2829 690 218 0 0 chr12 107398154 107398287 -36388168 + FLAM_A SINE Alu 1 133 0 1274 139 0 5 chr12 107398353 107398540 -36387915 - AluSg/x SINE Alu -15 295 110 2463 87 3 7 chr12 107399059 107399369 -36387086 + AluSx SINE Alu 1 309 -3 959 168 5 69 chr12 107399383 107399608 -36386847 + AluJo SINE Alu 97 308 0 2414 72 10 0 chr12 107399642 107399934 -36386521 - AluSc SINE Alu -14 295 1 908 150 8 0 chr12 107400067 107400200 -36386255 + AluJo SINE Alu 1 134 -178 2252 94 0 23 chr12 107400362 107400661 -36385794 + AluSx SINE Alu 13 304 -8 195 69 0 0 chr12 107400732 107400761 -36385694 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1305 201 38 14 chr12 107402787 107403076 -36383379 + AluJb SINE Alu 17 312 0 2255 115 0 13 chr12 107403391 107403703 -36382752 + AluSx SINE Alu 1 308 -4 1282 172 138 30 chr12 107404165 107404433 -36382022 + AluJo SINE Alu 1 297 -15 2061 109 0 7 chr12 107404454 107404728 -36381727 + AluSx SINE Alu 24 295 -17 1985 137 0 16 chr12 107404729 107405042 -36381413 + AluSg SINE Alu 1 308 -2 2485 59 0 13 chr12 107405310 107405617 -36380838 + AluY SINE Alu 1 303 -8 2466 64 0 3 chr12 107405622 107405917 -36380538 + AluSq SINE Alu 1 294 -19 1150 139 12 0 chr12 107406565 107406738 -36379717 - AluSg/x SINE Alu -5 307 133 267 31 0 0 chr12 107406738 107406770 -36379685 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1922 126 3 11 chr12 107406770 107407056 -36379399 - AluSx SINE Alu -28 284 1 2283 103 12 9 chr12 107407060 107407381 -36379074 - LTR8 LTR ERV1 -369 322 1 680 142 0 24 chr12 107407381 107407508 -36378947 - Tigger1 DNA MER2_type -70 2348 2225 1970 164 6 3 chr12 107407509 107407820 -36378635 + AluJb SINE Alu 1 312 0 489 67 0 0 chr12 107407831 107407891 -36378564 + U6 snRNA snRNA 1 60 -47 28 29 0 0 chr12 107407894 107407929 -36378526 + AT_rich Low_complexity Low_complexity 1 35 0 2369 103 0 0 chr12 107407936 107408236 -36378219 + AluSg SINE Alu 1 300 -10 875 126 0 42 chr12 107408247 107408390 -36378065 + FLAM_C SINE Alu 1 137 -6 6606 105 44 31 chr12 107408398 107408706 -36377749 - Tigger1 DNA MER2_type -184 2234 1931 2627 47 0 0 chr12 107408706 107409007 -36377448 - AluY SINE Alu -10 301 1 6606 105 44 31 chr12 107409007 107409127 -36377328 - Tigger1 DNA MER2_type -487 1931 1814 2336 113 0 0 chr12 107409127 107409427 -36377028 + AluSx SINE Alu 1 300 -12 6606 105 44 31 chr12 107409427 107409783 -36376672 - Tigger1 DNA MER2_type -604 1814 1430 1796 172 27 7 chr12 107409783 107410080 -36376375 + AluJb SINE Alu 1 303 -9 6606 105 44 31 chr12 107410080 107410344 -36376111 - Tigger1 DNA MER2_type -988 1430 1171 2400 74 3 3 chr12 107410344 107410641 -36375814 - AluSg SINE Alu -13 297 1 2150 127 7 7 chr12 107410641 107410941 -36375514 - AluSx SINE Alu -12 300 1 2398 93 0 0 chr12 107411034 107411335 -36375120 - AluSx SINE Alu -11 301 1 1306 188 4 16 chr12 107411383 107411628 -36374827 + AluJb SINE Alu 71 312 0 496 194 28 0 chr12 107411636 107411744 -36374711 + L1MD3 LINE L1 7367 7477 -518 1858 95 64 109 chr12 107411744 107411892 -36374563 + LTR8 LTR ERV1 1 154 -537 2338 119 0 0 chr12 107411892 107412202 -36374253 + AluSx SINE Alu 1 310 -2 1858 95 64 109 chr12 107412202 107412388 -36374067 + LTR8 LTR ERV1 154 319 -372 1479 197 102 135 chr12 107412388 107413355 -36373100 - LTR28 LTR ERV1 0 1020 1 2630 93 5 73 chr12 107413363 107413595 -36372860 + LTR8 LTR ERV1 311 505 -186 2294 98 7 0 chr12 107413595 107413891 -36372564 + AluSq SINE Alu 2 299 -14 2630 93 5 73 chr12 107413891 107414067 -36372388 + LTR8 LTR ERV1 505 691 0 1148 123 29 0 chr12 107414067 107414238 -36372217 + HUERS-P1 LTR ERV1 1 176 -6087 2645 96 75 0 chr12 107414239 107414613 -36371842 + HUERS-P1 LTR ERV1 382 783 -5480 405 0 0 0 chr12 107414625 107414670 -36371785 + (TG)n Simple_repeat Simple_repeat 2 46 0 1329 172 34 0 chr12 107414673 107414882 -36371573 - AluSx SINE Alu -33 279 64 662 162 0 0 chr12 107414882 107414981 -36371474 - AluSq/x SINE Alu -205 108 10 1117 168 98 23 chr12 107414981 107415237 -36371218 + AluJo SINE Alu 20 294 -18 1216 196 61 51 chr12 107415268 107415580 -36370875 - MLT1A1 LTR MaLR 0 365 51 2269 132 0 0 chr12 107415609 107415919 -36370536 - AluSx SINE Alu -2 310 1 280 250 0 0 chr12 107415922 107415982 -36370473 - MLT1A1 LTR MaLR -314 60 1 893 258 120 19 chr12 107416016 107416442 -36370013 + LTR1B LTR ERV1 48 516 -310 301 305 0 12 chr12 107416495 107416577 -36369878 + LTR28 LTR ERV1 900 980 -40 2278 111 0 0 chr12 107416642 107416940 -36369515 - AluSg SINE Alu -12 298 1 1654 150 41 3 chr12 107417106 107417399 -36369056 + LTR23 LTR ERV1 1 304 -133 * 3322 130 9 0 chr12 107417398 107417861 -36368594 - MER1A DNA MER1_type -60 469 3 318 132 0 0 chr12 107418073 107418126 -36368329 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 603 214 0 30 chr12 107418159 107418290 -36368165 - FLAM_C SINE Alu -13 130 4 422 254 51 8 chr12 107419005 107419123 -36367332 + L2 LINE L2 3187 3309 -4 204 340 140 0 chr12 107419260 107419360 -36367095 + L2 LINE L2 3150 3263 -9 1964 144 0 0 chr12 107420039 107420360 -36366095 - AluSx SINE Alu 0 321 1 2109 125 0 0 chr12 107420536 107420823 -36365632 + AluSx SINE Alu 2 288 -24 23 0 0 0 chr12 107420827 107420850 -36365605 + AT_rich Low_complexity Low_complexity 1 23 0 250 286 86 59 chr12 107421288 107421398 -36365057 - L2 LINE L2 -777 2537 2432 1791 168 7 10 chr12 107421398 107421696 -36364759 + AluSx SINE Alu 3 299 -13 250 286 86 59 chr12 107421696 107421875 -36364580 - L2 LINE L2 -882 2432 2240 312 262 56 9 chr12 107422480 107422587 -36363868 - MIR3 SINE MIR -29 179 68 2080 138 3 6 chr12 107422676 107422988 -36363467 + AluSx SINE Alu 1 311 -1 2426 125 19 21 chr12 107423216 107423592 -36362863 - THE1C LTR MaLR 0 375 1 3158 113 89 0 chr12 107423987 107424447 -36362008 + MER61D LTR ERV1 1 501 0 2229 122 40 6 chr12 107424843 107425195 -36361260 + THE1B LTR MaLR 1 364 0 1945 144 10 19 chr12 107425681 107425817 -36360638 + AluSx SINE Alu 2 138 -174 2323 92 0 7 chr12 107425817 107426123 -36360332 + AluSq SINE Alu 1 304 -9 1945 144 10 19 chr12 107426123 107426298 -36360157 + AluSx SINE Alu 138 310 -2 565 204 37 32 chr12 107426323 107426479 -36359976 - MIR SINE MIR -21 241 84 350 230 10 50 chr12 107426646 107426746 -36359709 - L2 LINE L2 0 3313 3218 1180 260 24 7 chr12 107426747 107427039 -36359416 + HERV16 LTR ERVL 1698 1994 -3002 1429 186 44 20 chr12 107427125 107427248 -36359207 + AluJb SINE Alu 1 120 -192 288 70 0 0 chr12 107427248 107427291 -36359164 + (CA)n Simple_repeat Simple_repeat 2 44 0 1429 186 44 20 chr12 107427291 107427462 -36358993 + AluJb SINE Alu 120 302 -10 2351 112 0 0 chr12 107427526 107427838 -36358617 - AluSx SINE Alu 0 312 1 1125 78 32 13 chr12 107428079 107428233 -36358222 - AluYa5 SINE Alu -14 297 141 283 189 0 0 chr12 107428233 107428286 -36358169 + Alu SINE Alu 249 301 0 * 1896 135 0 0 chr12 107428282 107428556 -36357899 + MER66B LTR ERV1 213 486 0 1507 190 76 30 chr12 107428556 107428924 -36357531 + L1ME1 LINE L1 5781 6161 -5 893 242 74 71 chr12 107429167 107429560 -36356895 + L2 LINE L2 2920 3313 0 1866 189 0 0 chr12 107429659 107429965 -36356490 - AluJb SINE Alu -6 306 1 510 290 68 32 chr12 107429994 107430202 -36356253 + L1MC4a LINE L1 5541 5730 -391 2158 130 0 0 chr12 107430202 107430502 -36355953 + AluSx SINE Alu 1 300 -12 510 290 68 32 chr12 107430502 107430596 -36355859 + L1MC4a LINE L1 5730 5819 -302 811 284 52 8 chr12 107430611 107430861 -36355594 + MIR SINE MIR 1 261 -1 21 0 0 0 chr12 107430865 107430886 -36355569 + AT_rich Low_complexity Low_complexity 1 21 0 359 248 16 70 chr12 107430938 107431067 -36355388 + L2 LINE L2 3186 3307 -6 2053 149 0 3 chr12 107431129 107431425 -36355030 + AluSx SINE Alu 1 295 -17 2075 86 3 98 chr12 107431435 107431761 -36354694 - AluSp SINE Alu -18 295 1 335 240 15 128 chr12 107431780 107431984 -36354471 + L1MC4 LINE L1 7836 8016 -26 278 50 25 0 chr12 107431990 107432030 -36354425 + (TG)n Simple_repeat Simple_repeat 2 42 0 278 309 52 7 chr12 107432119 107432255 -36354200 - MER20B DNA MER1_type -605 178 37 721 121 0 141 chr12 107432573 107432679 -36353776 - FLAM_C SINE Alu -174 128 47 2575 60 0 0 chr12 107432679 107432980 -36353475 - AluY SINE Alu -10 301 1 721 121 0 141 chr12 107432980 107433022 -36353433 - FLAM_C SINE Alu -255 47 1 2110 114 0 0 chr12 107433285 107433557 -36352898 + AluSx SINE Alu 1 272 -40 604 161 100 77 chr12 107433573 107433703 -36352752 + FLAM_C SINE Alu 1 133 0 1683 164 26 23 chr12 107433715 107434020 -36352435 + AluJo SINE Alu 7 312 0 2173 112 7 3 chr12 107434709 107435003 -36351452 + AluSx SINE Alu 1 295 -17 281 239 230 18 chr12 107435058 107435171 -36351284 + LTR33A LTR ERVL 6 142 -381 1110 141 0 32 chr12 107435335 107435520 -36350935 - AluSg/x SINE Alu -1 311 133 181 367 39 0 chr12 107435673 107435801 -36350654 - L2 LINE L2 -1265 2049 1917 286 171 53 26 chr12 107435891 107435967 -36350488 + L1M4 LINE L1 5307 5384 -762 1826 150 13 45 chr12 107435994 107436308 -36350147 - AluJb SINE Alu -8 304 1 237 65 0 0 chr12 107436336 107436367 -36350088 + (TG)n Simple_repeat Simple_repeat 2 32 0 1970 131 10 13 chr12 107436367 107436665 -36349790 - AluSg SINE Alu -13 297 1 186 43 0 0 chr12 107437634 107437657 -36348798 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2471 84 0 3 chr12 107437926 107438249 -36348206 - AluY SINE Alu 0 322 1 1455 190 35 28 chr12 107438400 107438568 -36347887 - AluJo SINE Alu -8 304 132 2257 96 0 17 chr12 107438568 107438869 -36347586 - AluSx SINE Alu -16 296 1 1455 190 35 28 chr12 107438869 107438990 -36347465 - AluJo SINE Alu -180 132 13 305 257 35 44 chr12 107439010 107439123 -36347332 + L1M4 LINE L1 2686 2797 -3349 612 219 25 25 chr12 107439554 107439714 -36346741 + LTR41 LTR ERVL 1 160 -613 22 0 0 0 chr12 107439771 107439793 -36346662 + AT_rich Low_complexity Low_complexity 1 22 0 231 146 98 0 chr12 107439808 107439849 -36346606 - MER66A LTR ERV1 -140 338 294 886 129 0 15 chr12 107439860 107439992 -36346463 - FLAM_C SINE Alu -1 132 3 1613 166 0 51 chr12 107440025 107440339 -36346116 - AluJo SINE Alu -9 303 6 330 308 28 20 chr12 107440604 107440851 -36345604 + L1M4 LINE L1 2962 3210 -2936 1764 154 0 24 chr12 107440874 107441172 -36345283 - AluSx SINE Alu 0 312 22 1950 154 7 0 chr12 107441245 107441538 -36344917 + AluJb SINE Alu 1 295 -17 2026 141 0 0 chr12 107441800 107442084 -36344371 - AluSx SINE Alu -18 294 11 350 353 6 6 chr12 107442121 107442277 -36344178 - L2 LINE L2 0 3313 3158 2219 134 3 0 chr12 107442305 107442610 -36343845 + AluSx SINE Alu 1 306 -6 640 110 0 22 chr12 107442722 107442813 -36343642 - 5S rRNA rRNA -31 90 2 2255 125 0 0 chr12 107442837 107443149 -36343306 + AluSx SINE Alu 1 312 0 1795 191 3 28 chr12 107443245 107443600 -36342855 - L1PB4 LINE L1 -4 6152 5807 513 121 204 89 chr12 107444272 107444294 -36342161 + MER53 DNA DNA 15 33 -156 2265 120 0 3 chr12 107444294 107444602 -36341853 + AluSq SINE Alu 1 307 -6 513 121 204 89 chr12 107444602 107444736 -36341719 + MER53 DNA DNA 33 189 0 299 264 80 27 chr12 107444948 107445174 -36341281 + L2 LINE L2 2917 3192 -80 759 133 100 0 chr12 107445774 107445894 -36340561 + FLAM_C SINE Alu 2 133 -10 188 292 90 0 chr12 107446018 107446107 -36340348 - MIR SINE MIR -13 249 153 614 154 0 174 chr12 107446332 107446447 -36340008 - MER96B DNA MER1_type? 0 417 284 2441 83 3 0 chr12 107446447 107446748 -36339707 - AluSp SINE Alu -11 302 1 614 154 0 174 chr12 107446748 107446780 -36339675 - MER96B DNA MER1_type? -133 284 310 2308 114 0 9 chr12 107446780 107447095 -36339360 + AluSx SINE Alu 1 312 0 614 154 0 174 chr12 107447095 107447147 -36339308 - MER96B DNA MER1_type? -106 311 252 669 124 41 124 chr12 107447168 107447313 -36339142 - FLAM_C SINE Alu 0 133 1 622 253 186 0 chr12 107447401 107447595 -36338860 + MIR SINE MIR 32 261 -1 350 229 60 0 chr12 107447904 107447987 -36338468 + MARNA DNA Mariner 400 487 -99 289 331 115 0 chr12 107448177 107448307 -36338148 + L2 LINE L2 3128 3272 0 25 90 0 0 chr12 107448658 107448725 -36337730 + GC_rich Low_complexity Low_complexity 1 67 0 216 0 0 0 chr12 107448889 107448913 -36337542 + (CGG)n Simple_repeat Simple_repeat 2 25 0 852 123 0 0 chr12 107449154 107449284 -36337171 - FLAM_C SINE Alu -3 130 1 775 134 0 8 chr12 107449397 107449516 -36336939 - FLAM_C SINE Alu -15 118 1 255 61 0 0 chr12 107449590 107449623 -36336832 + (T)n Simple_repeat Simple_repeat 1 33 0 320 259 84 23 chr12 107449695 107449826 -36336629 + L2 LINE L2 3134 3272 0 2266 124 0 0 chr12 107450126 107450425 -36336030 - AluSx SINE Alu -13 299 1 748 221 99 22 chr12 107450695 107450917 -36335538 - MIR SINE MIR 0 262 24 1988 98 18 98 chr12 107450917 107451244 -36335211 - AluSg SINE Alu -9 301 1 512 261 76 0 chr12 107451302 107451459 -36334996 + MIR SINE MIR 82 250 -12 2063 130 10 7 chr12 107451645 107451945 -36334510 - AluSq SINE Alu -12 301 1 1606 130 52 45 chr12 107452092 107452227 -36334228 + AluJo SINE Alu 1 134 -178 1682 144 104 0 chr12 107452227 107452505 -36333950 + AluJb SINE Alu 1 307 -5 1606 130 52 45 chr12 107452505 107452677 -36333778 + AluJo SINE Alu 134 310 -2 314 130 101 0 chr12 107452969 107453038 -36333417 - MER46C DNA MER2_type -182 156 81 244 219 0 0 chr12 107453107 107453171 -36333284 + A-rich Low_complexity Low_complexity 1 64 0 274 281 0 0 chr12 107453173 107453237 -36333218 - MER46C DNA MER2_type -272 66 3 233 204 20 0 chr12 107453238 107453287 -36333168 + (TG)n Simple_repeat Simple_repeat 2 51 0 411 236 45 18 chr12 107454021 107454131 -36332324 + L2 LINE L2 3201 3313 0 860 258 127 90 chr12 107454786 107454882 -36331573 - MLT1K LTR MaLR -21 567 476 2013 107 63 27 chr12 107454882 107455181 -36331274 + AluSg SINE Alu 1 310 0 860 258 127 90 chr12 107455181 107455194 -36331261 - MLT1K LTR MaLR -112 476 465 252 0 0 0 chr12 107455194 107455222 -36331233 + (TA)n Simple_repeat Simple_repeat 2 29 0 860 258 127 90 chr12 107455222 107455623 -36330832 - MLT1K LTR MaLR -123 465 37 2371 106 0 0 chr12 107455997 107456299 -36330156 - AluSx SINE Alu -10 302 1 260 245 133 10 chr12 107456526 107456624 -36329831 - MLT1L LTR MaLR -363 252 143 2449 25 7 4 chr12 107457188 107457495 -36328960 - AluY SINE Alu 0 308 1 393 229 9 28 chr12 107458308 107458417 -36328038 - L2 LINE L2 -19 3294 3188 2267 105 3 3 chr12 107458547 107458851 -36327604 - AluSx SINE Alu -8 304 1 1188 121 87 39 chr12 107458946 107459153 -36327302 + MER20 DNA MER1_type 1 217 -2 255 296 12 25 chr12 107459295 107459376 -36327079 - L2 LINE L2 -36 3236 3157 2515 123 3 27 chr12 107460242 107460315 -36326140 - THE1B LTR MaLR 0 364 291 2310 113 0 0 chr12 107460315 107460617 -36325838 + AluSq SINE Alu 1 302 -11 2515 123 3 27 chr12 107460617 107460916 -36325539 - THE1B LTR MaLR -73 291 1 2247 120 3 0 chr12 107460950 107461250 -36325205 + AluSx SINE Alu 1 301 -11 187 351 0 0 chr12 107461272 107461329 -36325126 - L2 LINE L2 -94 3178 3122 194 372 37 28 chr12 107461547 107461765 -36324690 - L2 LINE L2 -460 2854 2635 768 158 8 0 chr12 107461811 107461938 -36324517 - FLAM_A SINE Alu -5 137 10 6129 137 18 23 chr12 107461971 107462059 -36324396 - L1MA4 LINE L1 -1 6299 6212 2026 142 10 3 chr12 107462059 107462361 -36324094 + AluJo SINE Alu 1 304 -8 6129 137 18 23 chr12 107462361 107463905 -36322550 - L1MA4 LINE L1 -88 6212 4670 1087 198 12 0 chr12 107463989 107464161 -36322294 - FAM SINE Alu -1 174 1 1572 152 108 4 chr12 107464288 107464557 -36321898 + AluJb SINE Alu 1 297 -15 2126 156 85 51 chr12 107464577 107464917 -36321538 + Charlie1b DNA MER1_type 1 328 -2433 2116 119 3 3 chr12 107464917 107465212 -36321243 - AluSx SINE Alu -17 295 1 2126 156 85 51 chr12 107465212 107465315 -36321140 + Charlie1b DNA MER1_type 328 466 -2295 1722 162 3 30 chr12 107465315 107465535 -36320920 - AluJb SINE Alu -18 294 83 2473 75 0 0 chr12 107465535 107465828 -36320627 - AluSg SINE Alu -17 293 1 1722 162 3 30 chr12 107465828 107465909 -36320546 - AluJb SINE Alu -229 83 1 2126 156 85 51 chr12 107465909 107465970 -36320485 + Charlie1b DNA MER1_type 466 523 0 293 323 0 11 chr12 107466064 107466157 -36320298 + L2 LINE L2 2648 2739 -575 358 211 125 19 chr12 107466331 107466435 -36320020 + MER58B DNA MER1_type 43 157 -184 592 81 15 184 chr12 107466435 107466494 -36319961 + U5 snRNA snRNA 1 68 -48 1694 154 3 88 chr12 107466494 107466824 -36319631 + AluJb SINE Alu 1 302 -10 592 81 15 184 chr12 107466824 107466852 -36319603 + U5 snRNA snRNA 68 61 -55 1866 153 7 17 chr12 107466852 107467153 -36319302 - AluJb SINE Alu -14 298 1 592 81 15 184 chr12 107467153 107467200 -36319255 + U5 snRNA snRNA 60 113 -3 2113 113 106 101 chr12 107467200 107467369 -36319086 + MSTA LTR MaLR 1 168 -260 1934 132 24 14 chr12 107467369 107467657 -36318798 - AluSx SINE Alu -21 291 1 2113 113 106 101 chr12 107467657 107467689 -36318766 + MSTA LTR MaLR 168 198 -230 2327 97 3 0 chr12 107467689 107467988 -36318467 + AluSx SINE Alu 1 300 -12 2113 113 106 101 chr12 107467988 107468211 -36318244 + MSTA LTR MaLR 198 428 0 986 255 5 0 chr12 107468246 107468446 -36318009 + MER58B DNA MER1_type 141 341 0 367 160 47 127 chr12 107468515 107468665 -36317790 - MLT1H LTR MaLR -240 309 172 700 266 79 62 chr12 107468665 107469068 -36317387 + L2 LINE L2 2892 3301 -12 402 21 0 0 chr12 107469149 107469157 -36317298 + (TG)n Simple_repeat Simple_repeat 1 55 0 402 21 0 0 chr12 107469157 107469204 -36317251 + (TG)n Simple_repeat Simple_repeat 2 48 0 5684 155 42 36 chr12 107469235 107469360 -36317095 - L1MC2 LINE L1 -8 6336 6213 1255 186 124 4 chr12 107469360 107469634 -36316821 - AluJo SINE Alu -5 307 1 5684 155 42 36 chr12 107469634 107470675 -36315780 - L1MC2 LINE L1 -131 6213 5163 2248 96 3 7 chr12 107470675 107470966 -36315489 - AluSp SINE Alu -23 290 1 5684 155 42 36 chr12 107470966 107471065 -36315390 - L1MC2 LINE L1 -1181 5163 5066 1576 180 60 0 chr12 107471070 107471354 -36315101 - AluJb SINE Alu -11 301 1 4640 223 17 71 chr12 107471358 107471728 -36314727 - L1MC2 LINE L1 -1497 4649 4261 1311 153 189 8 chr12 107471728 107471982 -36314473 - AluSg SINE Alu 0 300 1 4640 223 17 71 chr12 107471982 107473004 -36313451 - L1MC2 LINE L1 -1885 4261 3332 1505 194 24 7 chr12 107473043 107473337 -36313118 - L1MB4 LINE L1 -4 6176 5878 314 266 96 11 chr12 107473476 107473570 -36312885 + L2 LINE L2 3179 3280 -33 499 227 81 88 chr12 107473592 107473900 -36312555 - L1ME4a LINE L1 -268 5853 5548 1678 160 3 27 chr12 107473948 107474241 -36312214 + AluJb SINE Alu 13 298 -14 247 243 135 36 chr12 107474696 107474807 -36311648 - MIR SINE MIR -64 198 77 572 257 84 6 chr12 107474890 107475069 -36311386 + MER3 DNA MER1_type 17 209 0 218 302 94 19 chr12 107475078 107475184 -36311271 + L3 LINE CR1 1461 1574 -3 1485 164 103 36 chr12 107475398 107475679 -36310776 - AluJo SINE Alu 0 302 3 191 245 0 38 chr12 107475912 107475965 -36310490 + L2 LINE L2 3184 3234 -79 387 182 273 0 chr12 107476446 107476545 -36309910 - MER39 LTR ERV1 -575 132 7 268 183 0 17 chr12 107476556 107476616 -36309839 - L1MD2 LINE L1 -461 5898 5840 1484 162 16 50 chr12 107477369 107477724 -36308731 - AluJo SINE Alu 0 344 1 781 197 0 15 chr12 107477736 107477868 -36308587 - FLAM_C SINE Alu -1 132 3 1969 153 10 3 chr12 107478063 107478371 -36308084 - AluJb SINE Alu -2 310 1 2068 132 7 0 chr12 107478371 107478675 -36307780 - AluJb SINE Alu -2 310 5 2063 122 0 58 chr12 107478827 107479154 -36307301 - AluSx SINE Alu -4 308 1 35 0 0 0 chr12 107479266 107479301 -36307154 + AT_rich Low_complexity Low_complexity 1 35 0 843 153 0 0 chr12 107479310 107479428 -36307027 - FLAM_C SINE Alu -15 118 1 314 231 9 93 chr12 107479487 107479595 -36306860 - MER65-int LTR ERV1 -4128 743 645 8231 134 58 29 chr12 107479658 107481108 -36305347 - Tigger2 DNA MER2_type -994 1724 233 421 212 145 21 chr12 107481102 107481295 -36305160 + MLT1J LTR MaLR 143 359 -152 * 542 312 251 8 chr12 107481337 107481934 -36304521 - L2 LINE L2 -1201 2113 1372 2166 98 7 3 chr12 107481993 107482288 -36304167 - AluSx SINE Alu -16 296 1 215 327 164 0 chr12 107482477 107482636 -36303819 + L2 LINE L2 2873 3057 -215 653 110 0 158 chr12 107483094 107483221 -36303234 + U6 snRNA snRNA 1 107 0 572 179 170 45 chr12 107483780 107483839 -36302616 + Charlie1 DNA MER1_type 2510 2560 -201 2113 114 7 0 chr12 107483839 107484160 -36302295 - AluSx SINE Alu 0 323 1 572 179 170 45 chr12 107484160 107484321 -36302134 + Charlie1 DNA MER1_type 2560 2760 -1 592 250 99 6 chr12 107484330 107484502 -36301953 - MER5A DNA MER1_type -1 188 1 35 24 0 0 chr12 107484678 107484720 -36301735 + AT_rich Low_complexity Low_complexity 1 42 0 856 167 0 0 chr12 107484720 107484846 -36301609 - FLAM_C SINE Alu -17 126 1 896 159 0 15 chr12 107485132 107485264 -36301191 - FLAM_C SINE Alu -3 130 1 213 243 216 0 chr12 107485349 107485423 -36301032 + MIR3 SINE MIR 68 157 -51 2077 110 3 3 chr12 107485488 107485805 -36300650 + AluSx SINE Alu 1 317 0 31 26 0 0 chr12 107486185 107486223 -36300232 + AT_rich Low_complexity Low_complexity 1 38 0 398 303 33 16 chr12 107486470 107486592 -36299863 - L2 LINE L2 -11 3302 3179 455 200 0 0 chr12 107486618 107486693 -36299762 + MER5A DNA MER1_type 1 75 -114 191 225 0 0 chr12 107487032 107487072 -36299383 - L2 LINE L2 -340 2973 2934 1736 228 40 38 chr12 107487266 107487766 -36298689 + L2 LINE L2 2812 3312 -1 1540 86 43 56 chr12 107488038 107488270 -36298185 - MER30 DNA MER1_type -1 229 1 211 359 29 0 chr12 107488335 107488438 -36298017 - L2 LINE L2 -246 3026 2921 533 258 67 49 chr12 107488554 107488779 -36297676 - L2 LINE L2 -10 3303 3075 1733 134 95 18 chr12 107488857 107489141 -36297314 - AluJo SINE Alu 0 312 7 581 172 30 0 chr12 107489717 107489816 -36296639 - U13 snRNA snRNA -2 102 1 2026 157 3 6 chr12 107489847 107490160 -36296295 + AluJb SINE Alu 1 312 0 2533 60 7 0 chr12 107491700 107491999 -36294456 - AluSp SINE Alu -12 301 1 31 76 0 0 chr12 107492042 107492108 -36294347 + AT_rich Low_complexity Low_complexity 1 66 0 405 269 69 87 chr12 107492224 107492570 -36293885 - L1ME4a LINE L1 -199 5922 5583 332 261 108 31 chr12 107492606 107492906 -36293549 - L1ME4a LINE L1 -700 5451 5269 1066 204 111 28 chr12 107493999 107494114 -36292341 + MLT1A1 LTR MaLR 4 108 -257 1347 152 87 73 chr12 107494114 107494403 -36292052 + AluJo SINE Alu 1 293 -19 1066 204 111 28 chr12 107494403 107494576 -36291879 + MLT1A1 LTR MaLR 108 316 -49 1929 152 7 10 chr12 107495614 107495911 -36290544 + AluJb SINE Alu 1 296 -16 241 372 109 0 chr12 107496099 107496236 -36290219 - L3 LINE CR1 -149 1428 1277 1707 260 66 22 chr12 107496390 107497188 -36289267 - L2 LINE L2 -9 3304 2477 909 324 85 31 chr12 107497192 107497766 -36288689 - L3 LINE CR1 -547 1030 426 1779 151 35 11 chr12 107497932 107498102 -36288353 - AluJb SINE Alu -17 295 114 181 0 69 0 chr12 107498102 107498131 -36288324 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1779 151 35 11 chr12 107498131 107498244 -36288211 - AluJb SINE Alu -198 114 5 773 44 0 0 chr12 107499727 107499818 -36286637 - 5S rRNA rRNA -30 91 1 357 238 60 0 chr12 107499818 107499902 -36286553 - L2 LINE L2 -26 3287 3199 2160 100 10 0 chr12 107500716 107501007 -36285448 - AluSx SINE Alu -18 294 1 288 328 84 25 chr12 107502015 107502253 -36284202 - L2 LINE L2 -210 3062 2811 2341 95 0 16 chr12 107503969 107504275 -36282180 + AluSc SINE Alu 1 301 -8 446 231 10 0 chr12 107504510 107504614 -36281841 - MER20 DNA MER1_type -5 214 110 513 228 8 24 chr12 107505538 107505661 -36280794 - MLT1I LTR MaLR 0 409 289 26 30 0 0 chr12 107505695 107505728 -36280727 + AT_rich Low_complexity Low_complexity 1 33 0 2026 119 24 10 chr12 107506521 107506815 -36279640 + AluSg SINE Alu 1 298 -12 217 301 48 29 chr12 107507016 107507119 -36279336 - L2 LINE L2 -12 3260 3156 294 208 130 13 chr12 107507830 107507907 -36278548 + Charlie8 DNA MER1_type 85 170 -2247 2249 99 3 0 chr12 107508088 107508390 -36278065 + AluSx SINE Alu 1 303 -9 205 270 14 27 chr12 107509302 107509376 -36277079 + CT-rich Low_complexity Low_complexity 3 75 0 1478 169 3 111 chr12 107509701 107510033 -36276422 + AluJb SINE Alu 1 296 -6 187 297 250 8 chr12 107510746 107510874 -36275581 - L2 LINE L2 -188 3084 2926 1686 188 21 0 chr12 107511716 107512003 -36274452 + AluJo SINE Alu 2 294 -18 2359 99 0 0 chr12 107512973 107513276 -36273179 - AluSq SINE Alu -10 303 1 225 0 0 0 chr12 107513741 107513766 -36272689 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 621 178 30 0 chr12 107514122 107514223 -36272232 + U6 snRNA snRNA 1 104 -3 347 271 20 121 chr12 107515495 107515694 -36270761 - MIR SINE MIR -1 261 83 397 308 40 55 chr12 107515923 107516176 -36270279 - L2 LINE L2 -47 3225 2977 2253 115 0 3 chr12 107516380 107516693 -36269762 - AluSx SINE Alu 0 312 1 295 253 59 54 chr12 107516718 107516904 -36269551 - L1ME4a LINE L1 0 6121 5935 180 0 0 0 chr12 107517000 107517020 -36269435 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 439 276 88 46 chr12 107517062 107517314 -36269141 - L1ME4a LINE L1 -543 5578 5460 2166 103 30 3 chr12 107518560 107518860 -36267595 + AluSx SINE Alu 1 308 -4 314 257 80 0 chr12 107520020 107520133 -36266322 - HsTC2 DNA Tc2 -1772 126 5 2542 60 0 0 chr12 107520249 107520550 -36265905 - AluY SINE Alu -9 302 2 987 110 0 7 chr12 107521158 107521294 -36265161 + AluSq/x SINE Alu 1 135 -177 2404 93 0 0 chr12 107521294 107521595 -36264860 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr12 107522427 107522452 -36264003 + AT_rich Low_complexity Low_complexity 1 25 0 905 206 7 0 chr12 107523052 107523207 -36263248 - AluJb SINE Alu -23 289 134 283 245 80 90 chr12 107524062 107524262 -36262193 - L1MC4 LINE L1 -245 7797 7600 789 231 119 49 chr12 107524402 107524888 -36261567 - L1MC5 LINE L1 -143 7818 7299 1987 127 10 29 chr12 107525181 107525488 -36260967 - AluSx SINE Alu -11 301 1 1554 145 4 0 chr12 107525537 107525765 -36260690 - AluSx SINE Alu -83 229 1 2295 104 3 3 chr12 107526355 107526662 -36259793 - AluSq SINE Alu -6 307 1 216 0 0 0 chr12 107527187 107527211 -36259244 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1952 127 0 4 chr12 107527215 107527491 -36258964 - AluSx SINE Alu -37 275 1 327 267 167 33 chr12 107527621 107527801 -36258654 - MIR SINE MIR -32 230 27 303 289 213 0 chr12 107527861 107528033 -36258422 - MIR SINE MIR -14 248 30 467 351 101 18 chr12 107528129 107528465 -36257990 - L2 LINE L2 -2 3270 2907 181 285 311 0 chr12 107529251 107529402 -36257053 - L2 LINE L2 -898 2416 2219 779 234 48 19 chr12 107533355 107533564 -36252891 - MER58C DNA MER1_type 0 215 1 2037 115 11 4 chr12 107533571 107533881 -36252574 - AluSx SINE Alu 0 312 1 1405 219 20 39 chr12 107534619 107534975 -36251480 - MLT1A1 LTR MaLR 0 365 17 358 280 7 73 chr12 107535073 107535223 -36251232 - MIR3 SINE MIR -49 159 20 379 290 179 19 chr12 107535244 107535451 -36251004 + MIR SINE MIR 16 255 -7 1632 176 17 10 chr12 107535621 107535923 -36250532 - AluJb SINE Alu -7 305 2 526 286 106 24 chr12 107536023 107536352 -36250103 + L1M4 LINE L1 3554 3909 -2237 261 279 240 6 chr12 107536597 107536780 -36249675 - MIR SINE MIR -25 237 12 295 211 13 13 chr12 107537281 107537357 -36249098 + MIR SINE MIR 186 261 -1 795 153 0 0 chr12 107537560 107537678 -36248777 - FLAM_C SINE Alu -15 118 1 190 346 84 19 chr12 107538133 107538240 -36248215 - L2 LINE L2 -362 2952 2839 309 214 83 12 chr12 107538274 107538358 -36248097 - MIR SINE MIR -1 261 172 1685 132 31 80 chr12 107538641 107538966 -36247489 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr12 107539031 107539052 -36247403 + AT_rich Low_complexity Low_complexity 1 21 0 388 244 0 34 chr12 107539060 107539179 -36247276 + L1ME4a LINE L1 5950 6064 -57 232 272 54 0 chr12 107539237 107539329 -36247126 - L1ME LINE L1 -612 5552 5456 2282 94 7 0 chr12 107539633 107539932 -36246523 - AluSx SINE Alu -11 301 1 2264 74 3 0 chr12 107540895 107541178 -36245277 - AluSx SINE Alu -28 284 1 2160 103 0 17 chr12 107541191 107541491 -36244964 - AluSq SINE Alu -18 295 1 22 0 0 0 chr12 107541491 107541513 -36244942 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 107542303 107542324 -36244131 + AT_rich Low_complexity Low_complexity 1 21 0 339 85 0 0 chr12 107542891 107542938 -36243517 + (CA)n Simple_repeat Simple_repeat 2 48 0 883 121 0 23 chr12 107543628 107543760 -36242695 + FLAM_C SINE Alu 1 129 -4 189 0 0 0 chr12 107543760 107543781 -36242674 + (TA)n Simple_repeat Simple_repeat 2 22 0 2308 95 0 0 chr12 107543958 107544252 -36242203 - AluSc SINE Alu -15 294 1 1483 112 197 8 chr12 107544790 107545039 -36241416 + AluSg1 SINE Alu 6 301 -8 849 127 8 15 chr12 107545220 107545354 -36241101 - FLAM_C SINE Alu 0 133 1 567 255 186 63 chr12 107546239 107546588 -36239867 - MLT1K LTR MaLR 0 588 197 407 194 28 0 chr12 107546590 107546662 -36239793 - MER2 DNA MER2_type -1 344 271 2267 111 0 13 chr12 107546662 107546978 -36239477 + AluSx SINE Alu 1 312 0 1069 184 19 28 chr12 107546990 107547202 -36239253 - MER2 DNA MER2_type -135 210 1 272 276 119 22 chr12 107547249 107547383 -36239072 - L2 LINE L2 -2310 1004 858 434 283 118 7 chr12 107547393 107547545 -36238910 + MIR SINE MIR 1 169 -93 805 219 27 11 chr12 107547558 107547741 -36238714 - L2 LINE L2 -2464 850 665 21 36 0 0 chr12 107547895 107547923 -36238532 + AT_rich Low_complexity Low_complexity 1 28 0 1567 137 75 38 chr12 107548848 107549141 -36237314 + AluJb SINE Alu 1 304 -8 277 382 171 4 chr12 107549291 107549566 -36236889 + L2 LINE L2 2435 2755 -559 271 303 30 20 chr12 107549883 107549982 -36236473 + L2 LINE L2 3171 3270 -2 2296 101 0 0 chr12 107551369 107551665 -36234790 - AluSx SINE Alu -16 296 1 25 0 0 0 chr12 107552171 107552196 -36234259 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr12 107552620 107552652 -36233803 + AT_rich Low_complexity Low_complexity 1 32 0 216 279 131 16 chr12 107553522 107553644 -36232811 - MIR3 SINE MIR -64 144 9 21 36 0 0 chr12 107554301 107554329 -36232126 + AT_rich Low_complexity Low_complexity 1 28 0 2196 113 0 7 chr12 107555398 107555698 -36230757 - AluSx SINE Alu -14 298 1 23 68 0 0 chr12 107555912 107555956 -36230499 + AT_rich Low_complexity Low_complexity 1 44 0 893 106 0 53 chr12 107556911 107557062 -36229393 - FLAM_C SINE Alu 0 143 1 2215 116 0 0 chr12 107557559 107557852 -36228603 - AluSg SINE Alu -15 295 3 1992 123 3 23 chr12 107558331 107558633 -36227822 - AluSx SINE Alu -16 296 1 33 56 0 0 chr12 107559661 107559715 -36226740 + AT_rich Low_complexity Low_complexity 1 54 0 744 93 19 0 chr12 107559717 107559825 -36226630 - HY1 scRNA scRNA -2 110 1 1868 87 20 4 chr12 107560452 107560706 -36225749 - AluSq SINE Alu -3 310 53 1396 156 0 29 chr12 107560950 107561193 -36225262 - AluJo SINE Alu -11 301 66 3536 118 101 60 chr12 107561200 107561912 -36224543 - L1MC1 LINE L1 -1 6332 5592 446 273 156 0 chr12 107561935 107562089 -36224366 + MIR SINE MIR 5 182 -80 28 0 0 0 chr12 107562477 107562505 -36223950 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 107562702 107562725 -36223730 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 107562790 107562811 -36223644 + AT_rich Low_complexity Low_complexity 1 21 0 770 305 114 49 chr12 107563464 107564035 -36222420 + L2 LINE L2 1713 2320 -994 460 239 99 42 chr12 107564010 107564152 -36222303 + MIR SINE MIR 101 250 -12 * 1722 230 40 38 chr12 107565405 107565905 -36220550 - L2 LINE L2 -1 3312 2812 193 225 0 0 chr12 107566099 107566139 -36220316 + L2 LINE L2 2934 2973 -340 455 200 0 0 chr12 107566478 107566553 -36219902 - MER5A DNA MER1_type -114 75 1 410 303 33 16 chr12 107566579 107566701 -36219754 + L2 LINE L2 3179 3302 -11 31 26 0 0 chr12 107566948 107566986 -36219469 + AT_rich Low_complexity Low_complexity 1 38 0 2076 110 3 3 chr12 107567366 107567683 -36218772 - AluSx SINE Alu 0 317 1 213 243 216 0 chr12 107567748 107567822 -36218633 - MIR3 SINE MIR -51 157 68 896 159 0 15 chr12 107567907 107568039 -36218416 + FLAM_C SINE Alu 1 130 -3 856 167 0 0 chr12 107568325 107568451 -36218004 + FLAM_C SINE Alu 1 126 -17 35 24 0 0 chr12 107568451 107568493 -36217962 + AT_rich Low_complexity Low_complexity 1 42 0 592 250 99 6 chr12 107568669 107568841 -36217614 + MER5A DNA MER1_type 1 188 -1 572 179 170 45 chr12 107568850 107569011 -36217444 - Charlie1 DNA MER1_type -1 2760 2560 2114 114 7 0 chr12 107569011 107569332 -36217123 + AluSx SINE Alu 1 323 0 572 179 170 45 chr12 107569332 107569391 -36217064 - Charlie1 DNA MER1_type -201 2560 2510 653 110 0 158 chr12 107569950 107570077 -36216378 - U6 snRNA snRNA 0 107 1 215 327 164 0 chr12 107570535 107570694 -36215761 - L2 LINE L2 -215 3057 2873 2166 98 7 3 chr12 107570883 107571178 -36215277 + AluSx SINE Alu 1 296 -16 542 312 251 8 chr12 107571237 107571834 -36214621 + L2 LINE L2 1372 2113 -1201 421 212 145 21 chr12 107571876 107572069 -36214386 - MLT1J LTR MaLR -152 359 143 * 8231 134 58 29 chr12 107572063 107573513 -36212942 + Tigger2 DNA MER2_type 233 1724 -994 314 231 9 93 chr12 107573576 107573684 -36212771 + MER65-int LTR ERV1 645 743 -4128 843 153 0 0 chr12 107573743 107573861 -36212594 + FLAM_C SINE Alu 1 118 -15 35 0 0 0 chr12 107573870 107573905 -36212550 + AT_rich Low_complexity Low_complexity 1 35 0 2079 119 0 58 chr12 107574017 107574344 -36212111 + AluSx SINE Alu 1 308 -4 2068 132 7 0 chr12 107574496 107574800 -36211655 + AluJb SINE Alu 5 310 -2 1969 153 10 3 chr12 107574800 107575108 -36211347 + AluJb SINE Alu 1 310 -2 781 197 0 15 chr12 107575303 107575435 -36211020 + FLAM_C SINE Alu 3 132 -1 1485 162 16 50 chr12 107575447 107575802 -36210653 + AluJo SINE Alu 1 344 0 268 183 0 17 chr12 107576555 107576615 -36209840 + L1MD2 LINE L1 5840 5898 -461 387 182 273 0 chr12 107576626 107576725 -36209730 + MER39 LTR ERV1 7 132 -575 191 245 0 38 chr12 107577206 107577259 -36209196 - L2 LINE L2 -79 3234 3184 1485 164 103 36 chr12 107577492 107577773 -36208682 + AluJo SINE Alu 3 302 0 218 302 94 19 chr12 107577987 107578093 -36208362 - L3 LINE CR1 -3 1574 1461 572 257 84 6 chr12 107578102 107578281 -36208174 - MER3 DNA MER1_type 0 209 17 247 243 135 36 chr12 107578364 107578475 -36207980 + MIR SINE MIR 77 198 -64 1678 160 3 27 chr12 107578930 107579223 -36207232 - AluJb SINE Alu -14 298 13 499 227 81 88 chr12 107579271 107579579 -36206876 + L1ME4a LINE L1 5548 5853 -268 314 266 96 11 chr12 107579601 107579695 -36206760 - L2 LINE L2 -33 3280 3179 1505 194 24 7 chr12 107579834 107580128 -36206327 + L1MB4 LINE L1 5878 6176 -4 4640 223 17 71 chr12 107580167 107581189 -36205266 + L1MC2 LINE L1 3332 4261 -1885 1311 153 189 8 chr12 107581189 107581443 -36205012 + AluSg SINE Alu 1 300 0 4640 223 17 71 chr12 107581443 107581813 -36204642 + L1MC2 LINE L1 4261 4649 -1497 1576 180 60 0 chr12 107581817 107582101 -36204354 + AluJb SINE Alu 1 301 -11 5684 155 42 36 chr12 107582106 107582205 -36204250 + L1MC2 LINE L1 5066 5163 -1181 2248 96 3 7 chr12 107582205 107582496 -36203959 + AluSp SINE Alu 1 290 -23 5684 155 42 36 chr12 107582496 107583537 -36202918 + L1MC2 LINE L1 5163 6213 -131 1255 186 124 4 chr12 107583537 107583811 -36202644 + AluJo SINE Alu 1 307 -5 5684 155 42 36 chr12 107583811 107583936 -36202519 + L1MC2 LINE L1 6213 6336 -8 402 21 0 0 chr12 107583937 107583963 -36202492 + (CA)n Simple_repeat Simple_repeat 1 73 0 402 21 0 0 chr12 107583963 107584010 -36202445 + (CA)n Simple_repeat Simple_repeat 2 48 0 700 266 79 62 chr12 107584099 107584502 -36201953 - L2 LINE L2 -12 3301 2892 367 160 47 127 chr12 107584502 107584652 -36201803 + MLT1H LTR MaLR 172 309 -240 986 255 5 0 chr12 107584721 107584921 -36201534 - MER58B DNA MER1_type 0 341 141 1255 126 103 27 chr12 107584956 107585179 -36201276 - MSTA LTR MaLR 0 428 189 2240 93 0 0 chr12 107585179 107585459 -36200996 - AluSx SINE Alu -12 300 21 1934 132 24 14 chr12 107585564 107585852 -36200603 + AluSx SINE Alu 1 291 -21 859 120 171 0 chr12 107585863 107586021 -36200434 - MSTA LTR MaLR -243 185 1 592 81 15 184 chr12 107586021 107586068 -36200387 - U5 snRNA snRNA -3 113 60 1866 153 7 17 chr12 107586068 107586369 -36200086 + AluJb SINE Alu 1 298 -14 592 81 15 184 chr12 107586369 107586397 -36200058 - U5 snRNA snRNA -56 60 67 1694 154 3 88 chr12 107586397 107586727 -36199728 - AluJb SINE Alu -10 302 1 592 81 15 184 chr12 107586727 107586786 -36199669 - U5 snRNA snRNA -48 68 1 358 211 125 19 chr12 107586786 107586890 -36199565 - MER58B DNA MER1_type -184 157 43 293 323 0 11 chr12 107587064 107587157 -36199298 - L2 LINE L2 -575 2739 2648 2126 156 85 51 chr12 107587251 107587312 -36199143 - Charlie1b DNA MER1_type -2238 523 466 1722 162 3 30 chr12 107587312 107587393 -36199062 + AluJb SINE Alu 1 83 -229 2473 75 0 0 chr12 107587393 107587686 -36198769 + AluSg SINE Alu 1 293 -17 1722 162 3 30 chr12 107587686 107587906 -36198549 + AluJb SINE Alu 83 294 -18 2126 156 85 51 chr12 107587906 107588009 -36198446 - Charlie1b DNA MER1_type -2295 466 368 2116 119 3 3 chr12 107588009 107588304 -36198151 + AluSx SINE Alu 1 295 -17 2126 156 85 51 chr12 107588304 107588644 -36197811 - Charlie1b DNA MER1_type -2393 368 1 1553 152 108 4 chr12 107588664 107588933 -36197522 - AluJb SINE Alu -15 297 1 1087 198 12 0 chr12 107589060 107589232 -36197223 + FAM SINE Alu 1 174 -1 6186 137 18 23 chr12 107589316 107590860 -36195595 + L1MA4 LINE L1 4670 6212 -88 2032 139 10 3 chr12 107590860 107591162 -36195293 - AluJo SINE Alu -8 304 1 6186 137 18 23 chr12 107591162 107591250 -36195205 + L1MA4 LINE L1 6212 6299 -1 817 158 8 0 chr12 107591283 107591410 -36195045 + FLAM_A SINE Alu 10 137 -5 248 353 46 37 chr12 107591456 107591674 -36194781 + L2 LINE L2 2635 2854 -460 203 351 0 0 chr12 107591892 107591949 -36194506 + L2 LINE L2 3122 3178 -94 2234 120 3 0 chr12 107591971 107592271 -36194184 - AluSx SINE Alu -11 301 1 2648 123 3 27 chr12 107592305 107592604 -36193851 + THE1B LTR MaLR 1 291 -73 2291 113 0 0 chr12 107592604 107592906 -36193549 - AluSq SINE Alu -11 302 1 2648 123 3 27 chr12 107592906 107592979 -36193476 + THE1B LTR MaLR 291 364 0 281 296 12 25 chr12 107593845 107593926 -36192529 + L2 LINE L2 3157 3236 -36 1264 121 87 39 chr12 107594068 107594275 -36192180 - MER20 DNA MER1_type -2 217 1 2245 105 3 3 chr12 107594370 107594674 -36191781 + AluSx SINE Alu 1 304 -8 430 239 8 26 chr12 107594796 107594913 -36191542 + L2 LINE L2 3180 3294 -19 2412 25 7 4 chr12 107595726 107596033 -36190422 + AluY SINE Alu 1 308 0 262 245 133 10 chr12 107596597 107596695 -36189760 + MLT1L LTR MaLR 143 252 -363 2357 106 0 0 chr12 107596922 107597224 -36189231 + AluSx SINE Alu 1 302 -10 859 258 127 90 chr12 107597598 107597999 -36188456 + MLT1K LTR MaLR 37 422 -166 252 0 0 0 chr12 107597999 107598027 -36188428 + (TA)n Simple_repeat Simple_repeat 2 29 0 859 258 127 90 chr12 107598027 107598040 -36188415 + MLT1K LTR MaLR 422 433 -155 2001 107 63 27 chr12 107598040 107598339 -36188116 - AluSg SINE Alu 0 310 1 859 258 127 90 chr12 107598339 107598435 -36188020 + MLT1K LTR MaLR 433 567 -21 446 236 45 18 chr12 107599090 107599200 -36187255 - L2 LINE L2 0 3313 3201 233 204 20 0 chr12 107599934 107599983 -36186472 + (CA)n Simple_repeat Simple_repeat 2 51 0 275 281 0 0 chr12 107599984 107600048 -36186407 + MER46C DNA MER2_type 3 66 -272 244 219 0 0 chr12 107600050 107600114 -36186341 + T-rich Low_complexity Low_complexity 1 64 0 316 130 101 0 chr12 107600183 107600252 -36186203 + MER46C DNA MER2_type 81 156 -182 1598 130 52 45 chr12 107600544 107600716 -36185739 - AluJo SINE Alu -2 310 134 1666 144 104 0 chr12 107600716 107600994 -36185461 - AluJb SINE Alu -5 307 1 1598 130 52 45 chr12 107600994 107601129 -36185326 - AluJo SINE Alu -178 134 1 2050 130 10 7 chr12 107601276 107601576 -36184879 + AluSq SINE Alu 1 301 -12 557 261 76 0 chr12 107601762 107601919 -36184536 - MIR SINE MIR -12 250 82 1971 98 18 98 chr12 107601977 107602304 -36184151 + AluSg SINE Alu 1 301 -9 818 221 99 22 chr12 107602304 107602526 -36183929 + MIR SINE MIR 24 262 0 2254 124 0 0 chr12 107602796 107603095 -36183360 + AluSx SINE Alu 1 299 -13 366 259 84 23 chr12 107603395 107603526 -36182929 - L2 LINE L2 0 3272 3134 246 62 0 0 chr12 107603598 107603630 -36182825 + (A)n Simple_repeat Simple_repeat 1 32 0 826 134 0 8 chr12 107603704 107603823 -36182632 + FLAM_C SINE Alu 1 118 -15 898 123 0 0 chr12 107603936 107604066 -36182389 + FLAM_C SINE Alu 1 130 -3 216 0 0 0 chr12 107604307 107604331 -36182124 + (CCG)n Simple_repeat Simple_repeat 2 25 0 28 113 0 0 chr12 107604433 107604566 -36181889 + GC_rich Low_complexity Low_complexity 1 133 0 322 359 107 5 chr12 107604917 107605123 -36181332 - L2 LINE L2 0 3272 3046 354 229 60 0 chr12 107605237 107605320 -36181135 - MARNA DNA Mariner -99 487 400 681 253 186 0 chr12 107605629 107605823 -36180632 - MIR SINE MIR -1 261 32 724 124 41 124 chr12 107605911 107606056 -36180399 + FLAM_C SINE Alu 1 133 0 627 154 0 174 chr12 107606077 107606129 -36180326 + MER96B DNA MER1_type? 252 311 -106 2298 114 0 9 chr12 107606129 107606444 -36180011 - AluSx SINE Alu 0 312 1 627 154 0 174 chr12 107606444 107606476 -36179979 + MER96B DNA MER1_type? 311 347 -70 2422 83 3 0 chr12 107606476 107606777 -36179678 + AluSp SINE Alu 1 302 -11 627 154 0 174 chr12 107606777 107606892 -36179563 + MER96B DNA MER1_type? 347 417 0 212 281 90 0 chr12 107607117 107607206 -36179249 + MIR SINE MIR 153 249 -13 810 133 100 0 chr12 107607330 107607450 -36179005 - FLAM_C SINE Alu -10 133 2 372 283 243 22 chr12 107608050 107608276 -36178179 - L2 LINE L2 -80 3192 2917 523 121 204 89 chr12 107608489 107608623 -36177832 - MER53 DNA DNA 0 189 33 2255 120 0 3 chr12 107608623 107608931 -36177524 - AluSq SINE Alu -6 307 1 523 121 204 89 chr12 107608931 107608953 -36177502 - MER53 DNA DNA -156 33 15 1857 192 6 28 chr12 107609625 107609979 -36176476 + L1PB4 LINE L1 5807 6152 -4 2221 128 0 0 chr12 107610075 107610387 -36176068 - AluSx SINE Alu 0 312 1 636 110 0 22 chr12 107610411 107610502 -36175953 + 5S rRNA rRNA 2 90 -31 2095 154 3 0 chr12 107610614 107610920 -36175535 - AluSx SINE Alu -5 307 1 1925 124 0 0 chr12 107610993 107611260 -36175195 + AluSx SINE Alu 22 288 -24 23 0 0 0 chr12 107611264 107611287 -36175168 + AT_rich Low_complexity Low_complexity 1 23 0 223 315 171 11 chr12 107611454 107611635 -36174820 - L2 LINE L2 -420 2894 2685 2226 124 0 0 chr12 107611835 107612133 -36174322 + AluSx SINE Alu 3 300 -12 1801 127 34 7 chr12 107612133 107612425 -36174030 - Tigger1 DNA MER2_type -613 1805 1506 2010 119 3 23 chr12 107613190 107613492 -36172963 + AluSx SINE Alu 1 296 -16 2221 119 0 0 chr12 107613969 107614264 -36172191 + AluSg SINE Alu 1 295 -15 931 119 0 8 chr12 107614761 107614895 -36171560 + AluJb SINE Alu 1 133 -179 219 167 0 0 chr12 107614898 107614940 -36171515 + A-rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr12 107615867 107615911 -36170544 + AT_rich Low_complexity Low_complexity 1 44 0 2216 113 0 7 chr12 107616125 107616425 -36170030 + AluSx SINE Alu 1 298 -14 317 286 118 25 chr12 107616444 107616605 -36169850 - L2 LINE L2 -899 2415 2240 347 266 89 8 chr12 107617193 107617317 -36169138 - MIR3 SINE MIR -7 201 68 2080 138 3 6 chr12 107617406 107617718 -36168737 + AluSx SINE Alu 1 311 -1 2426 125 19 21 chr12 107617946 107618322 -36168133 - THE1C LTR MaLR 0 375 1 3158 113 89 0 chr12 107618717 107619177 -36167278 + MER61D LTR ERV1 1 501 0 2229 122 40 6 chr12 107619573 107619925 -36166530 + THE1B LTR MaLR 1 364 0 1945 144 10 19 chr12 107620411 107620547 -36165908 + AluSx SINE Alu 2 138 -174 2323 92 0 7 chr12 107620547 107620853 -36165602 + AluSq SINE Alu 1 304 -9 1945 144 10 19 chr12 107620853 107621028 -36165427 + AluSx SINE Alu 138 310 -2 565 204 37 32 chr12 107621053 107621209 -36165246 - MIR SINE MIR -21 241 84 350 230 10 50 chr12 107621376 107621476 -36164979 - L2 LINE L2 0 3313 3218 1180 260 24 7 chr12 107621477 107621769 -36164686 + HERV16 LTR ERVL 1698 1994 -3002 1367 192 48 11 chr12 107621855 107621978 -36164477 + AluJb SINE Alu 1 118 -194 270 73 0 0 chr12 107621978 107622019 -36164436 + (CA)n Simple_repeat Simple_repeat 2 42 0 1367 192 48 11 chr12 107622019 107622166 -36164289 + AluJb SINE Alu 118 281 -31 2351 112 0 0 chr12 107622254 107622566 -36163889 - AluSx SINE Alu 0 312 1 1125 78 32 13 chr12 107622807 107622961 -36163494 - AluYa5 SINE Alu -14 297 141 283 189 0 0 chr12 107622961 107623014 -36163441 + Alu SINE Alu 248 300 0 * 1896 135 0 0 chr12 107623010 107623284 -36163171 + MER66B LTR ERV1 213 486 0 1507 190 76 30 chr12 107623284 107623652 -36162803 + L1ME1 LINE L1 5781 6161 -5 893 242 74 71 chr12 107623895 107624288 -36162167 + L2 LINE L2 2920 3313 0 1866 189 0 0 chr12 107624387 107624693 -36161762 - AluJb SINE Alu -6 306 1 510 290 68 32 chr12 107624722 107624930 -36161525 + L1MC4a LINE L1 5541 5730 -391 2095 137 0 0 chr12 107624930 107625230 -36161225 + AluSx SINE Alu 1 300 -12 510 290 68 32 chr12 107625230 107625324 -36161131 + L1MC4a LINE L1 5730 5819 -302 811 284 52 8 chr12 107625339 107625589 -36160866 + MIR SINE MIR 1 261 -1 21 0 0 0 chr12 107625593 107625614 -36160841 + AT_rich Low_complexity Low_complexity 1 21 0 359 248 16 70 chr12 107625666 107625795 -36160660 + L2 LINE L2 3186 3307 -6 918 167 0 31 chr12 107625975 107626160 -36160295 + AluJb SINE Alu 129 308 0 2565 51 0 0 chr12 107626194 107626489 -36159966 - AluSc SINE Alu -14 295 1 29 0 0 0 chr12 107626602 107626631 -36159824 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 107627430 107627454 -36159001 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr12 107627584 107627612 -36158843 + AT_rich Low_complexity Low_complexity 1 28 0 2116 105 0 69 chr12 107627665 107627999 -36158456 - AluSx SINE Alu -1 311 1 29 28 0 0 chr12 107628153 107628189 -36158266 + AT_rich Low_complexity Low_complexity 1 36 0 330 228 11 11 chr12 107628651 107628743 -36157712 - MER63A DNA MER1_type -2 208 117 445 209 114 9 chr12 107628791 107628896 -36157559 - MER63A DNA MER1_type 0 124 9 600 219 56 28 chr12 107629028 107629206 -36157249 + MIR SINE MIR 78 260 -2 186 43 0 0 chr12 107629289 107629312 -36157143 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr12 107629355 107629380 -36157075 + AT_rich Low_complexity Low_complexity 1 25 0 2003 132 0 40 chr12 107629380 107629547 -36156908 - AluJb SINE Alu -21 291 140 2268 123 3 7 chr12 107629547 107629857 -36156598 - AluSx SINE Alu -3 309 1 2003 132 0 40 chr12 107629857 107629992 -36156463 - AluJb SINE Alu -172 140 1 1649 176 17 10 chr12 107630219 107630521 -36155934 - AluJb SINE Alu -7 305 2 576 286 106 24 chr12 107630621 107630950 -36155505 + L1M4 LINE L1 3554 3909 -2237 219 289 132 0 chr12 107631257 107631378 -36155077 - MIR SINE MIR -114 148 12 263 211 13 13 chr12 107631879 107631955 -36154500 + MIR SINE MIR 186 261 -1 800 153 0 0 chr12 107632158 107632276 -36154179 - FLAM_C SINE Alu -15 118 1 276 214 83 12 chr12 107632872 107632956 -36153499 - MIR SINE MIR -1 261 172 1724 129 31 80 chr12 107633239 107633564 -36152891 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr12 107633629 107633650 -36152805 + AT_rich Low_complexity Low_complexity 1 21 0 395 244 0 34 chr12 107633658 107633777 -36152678 + L1ME4a LINE L1 5950 6064 -57 239 261 63 18 chr12 107633816 107633927 -36152528 - L1ME LINE L1 -593 5571 5456 2320 94 7 0 chr12 107634231 107634530 -36151925 - AluSx SINE Alu -11 301 1 492 166 20 133 chr12 107634543 107634632 -36151823 + Charlie1 DNA MER1_type 2628 2695 -66 1712 166 3 30 chr12 107634632 107634851 -36151604 - AluJb SINE Alu -19 293 83 2408 88 0 0 chr12 107634851 107635146 -36151309 - AluSx SINE Alu -17 295 1 1712 166 3 30 chr12 107635146 107635227 -36151228 - AluJb SINE Alu -229 83 1 492 166 20 133 chr12 107635227 107635288 -36151167 + Charlie1 DNA MER1_type 2695 2761 0 277 312 0 0 chr12 107635382 107635459 -36150996 + L2 LINE L2 2648 2724 -590 378 229 110 17 chr12 107635649 107635767 -36150688 + MER58 DNA MER1_type 43 171 -170 378 100 17 17 chr12 107635753 107635813 -36150642 + U5 snRNA snRNA 1 60 -56 964 215 5 9 chr12 107635813 107636027 -36150428 + AluJb SINE Alu 1 213 -99 1100 108 0 0 chr12 107636277 107636416 -36150039 - AluSq/x SINE Alu -173 139 1 435 93 0 35 chr12 107636514 107636600 -36149855 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 201 139 0 0 chr12 107636590 107636633 -36149822 + (TTCTC)n Simple_repeat Simple_repeat 5 47 0 * 400 139 63 0 chr12 107636633 107636712 -36149743 - LTR9 LTR ERV1 -91 521 438 2022 142 6 22 chr12 107636971 107637288 -36149167 + AluJb SINE Alu 1 312 0 330 308 28 20 chr12 107637310 107637557 -36148898 - L1M4 LINE L1 -2936 3210 2962 1613 166 0 51 chr12 107637822 107638136 -36148319 + AluJo SINE Alu 6 303 -9 886 129 0 15 chr12 107638169 107638301 -36148154 + FLAM_C SINE Alu 3 132 -1 231 146 98 0 chr12 107638312 107638353 -36148102 + MER66A LTR ERV1 294 338 -140 22 0 0 0 chr12 107638368 107638390 -36148065 + AT_rich Low_complexity Low_complexity 1 22 0 537 229 52 20 chr12 107638447 107638600 -36147855 - LTR41 LTR ERVL -613 160 3 2887 82 5 34 chr12 107738604 107739018 -36047437 - LTR17 LTR ERV1 -378 402 1 544 108 0 0 chr12 107739018 107739092 -36047363 - MER4D LTR ERV1 -69 803 730 1015 123 0 0 chr12 107739095 107739241 -36047214 - AluSg/x SINE Alu -2 308 163 3574 151 28 25 chr12 107739245 107739882 -36046573 - MER4E LTR ERV1 -139 640 2 26 0 0 0 chr12 107740326 107740352 -36046103 + AT_rich Low_complexity Low_complexity 1 26 0 361 275 133 75 chr12 107740391 107740737 -36045718 + MLT1I LTR MaLR 3 368 -41 328 275 104 18 chr12 107741458 107741680 -36044775 - MER20B DNA MER1_type -13 770 530 209 271 0 34 chr12 107741799 107741858 -36044597 + MER91 DNA MER1_type 73 129 -11 247 349 101 0 chr12 107742246 107742355 -36044100 + L2 LINE L2 3139 3258 -14 436 352 108 35 chr12 107742490 107743155 -36043300 + L2 LINE L2 2143 2856 -458 1140 156 17 0 chr12 107743535 107743714 -36042741 - Tigger3(Golem) DNA MER2_type 0 3036 2855 544 94 59 0 chr12 107743814 107743899 -36042556 + L1PA13 LINE L1 6074 6163 0 7071 161 26 4 chr12 107743899 107745280 -36041175 - L1 LINE L1 -1145 5001 3590 4324 173 50 3 chr12 107745286 107746196 -36040259 + L1 LINE L1 2698 3649 -2497 1881 161 7 7 chr12 107746257 107746562 -36039893 - AluJb SINE Alu -7 305 1 201 74 0 0 chr12 107747526 107747553 -36038902 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2295 92 7 0 chr12 107747707 107748002 -36038453 + AluSg SINE Alu 1 297 -13 557 276 98 5 chr12 107748570 107748773 -36037682 + L1MC4 LINE L1 6842 7063 -979 563 280 43 51 chr12 107748916 107748987 -36037468 + L1MC4a LINE L1 7086 7156 -652 2409 78 0 3 chr12 107748987 107749295 -36037160 - AluY SINE Alu -4 307 1 563 280 43 51 chr12 107749295 107749480 -36036975 + L1MC4a LINE L1 7156 7268 -540 385 281 41 0 chr12 107749522 107749668 -36036787 + L1MC5 LINE L1 7261 7412 -549 388 251 151 25 chr12 107749730 107749929 -36036526 + L1MC4 LINE L1 7700 7923 -119 2010 154 0 6 chr12 107750192 107750504 -36035951 + AluSx SINE Alu 1 310 -2 1008 66 0 0 chr12 107750642 107750764 -36035691 + AluY SINE Alu 1 122 -189 5781 104 17 15 chr12 107750867 107750953 -36035502 - L1PA13 LINE L1 0 6163 6079 2141 118 0 23 chr12 107750953 107751259 -36035196 - AluSx SINE Alu -13 299 1 5781 104 17 15 chr12 107751259 107751840 -36034615 - L1PA13 LINE L1 -84 6079 5500 2152 125 0 0 chr12 107751840 107752129 -36034326 - AluSx SINE Alu -14 298 10 5781 104 17 15 chr12 107752129 107752298 -36034157 - L1PA13 LINE L1 -663 5500 5333 2120 122 0 13 chr12 107752298 107752609 -36033846 - AluSq SINE Alu -6 307 1 5781 104 17 15 chr12 107752609 107753370 -36033085 - L1PA13 LINE L1 -830 5333 4559 884 196 16 0 chr12 107753379 107753573 -36032882 + L1PA13 LINE L1 4358 4554 -1592 * 4849 142 41 59 chr12 107753551 107753895 -36032560 + L1MA8 LINE L1 4977 5326 -965 628 246 8 0 chr12 107753895 107754021 -36032434 + FLAM_A SINE Alu 1 127 -6 4849 142 41 59 chr12 107754021 107754650 -36031805 + L1MA8 LINE L1 5326 5941 -350 2306 76 7 0 chr12 107754650 107754941 -36031514 + AluY SINE Alu 1 293 -18 4849 142 41 59 chr12 107754941 107755283 -36031172 + L1MA8 LINE L1 5941 6288 -3 296 356 30 0 chr12 107755295 107755396 -36031059 - MIR SINE MIR -150 112 9 246 316 21 16 chr12 107755399 107755589 -36030866 - L1ME LINE L1 -233 5888 5698 1807 171 10 7 chr12 107755763 107756068 -36030387 - AluJb SINE Alu -6 306 1 283 292 100 23 chr12 107756585 107756715 -36029740 - MIR SINE MIR -28 234 95 1613 140 92 41 chr12 107757182 107757475 -36028980 - AluSx SINE Alu -4 308 1 22 0 0 0 chr12 107757649 107757671 -36028784 + AT_rich Low_complexity Low_complexity 1 22 0 1825 160 3 29 chr12 107758671 107758983 -36027472 - AluJo SINE Alu -3 309 6 532 250 98 81 chr12 107759238 107759586 -36026869 + MLT1L LTR MaLR 30 521 -94 304 171 85 27 chr12 107759635 107759734 -36026721 + HsTC2 DNA Tc2 21 1842 -56 1683 135 107 6 chr12 107761120 107761447 -36025008 + MER46B DNA MER2_type 1 235 -1 2170 95 17 10 chr12 107761552 107761848 -36024607 + AluSq SINE Alu 1 298 -15 398 255 138 64 chr12 107762089 107762277 -36024178 + MIR SINE MIR 61 262 0 5589 69 1 0 chr12 107762454 107763178 -36023277 + L1PA6 LINE L1 5430 6154 0 272 130 0 0 chr12 107763215 107763261 -36023194 - L1PA8A LINE L1 -431 5700 5655 190 309 124 18 chr12 107763730 107763947 -36022508 + L2 LINE L2 1464 1703 -1611 5550 150 18 12 chr12 107764709 107766209 -36020246 - L1PB3 LINE L1 -1 6153 4646 2312 97 3 0 chr12 107767131 107767430 -36019025 - AluY SINE Alu -4 307 8 33608 66 8 2 chr12 107767709 107773805 -36012650 - L1PA5 LINE L1 -20 6134 1 291 254 42 0 chr12 107774262 107774333 -36012122 - MIR SINE MIR -63 145 72 304 29 0 0 chr12 107776054 107776089 -36010366 - U2 snRNA snRNA -153 35 1 8405 28 2 1 chr12 107776149 107777757 -36008698 + L1PA3 LINE L1 4390 6000 -155 2636 199 53 45 chr12 107778329 107778967 -36007488 + MER82 DNA MER2_type 11 653 0 1037 171 6 0 chr12 107779203 107779379 -36007076 + AluJb SINE Alu 133 309 -3 616 296 18 18 chr12 107779475 107779695 -36006760 - MIR SINE MIR -41 221 2 842 277 23 0 chr12 107779906 107780162 -36006293 + MIR SINE MIR 1 262 0 233 287 35 17 chr12 107780284 107780399 -36006056 + MER103 DNA DNA 10 126 -40 775 211 136 5 chr12 107780429 107780628 -36005827 + MIR SINE MIR 36 260 -2 1663 131 71 25 chr12 107780647 107780929 -36005526 - AluJb SINE Alu -17 295 1 712 226 208 9 chr12 107781418 107781630 -36004825 - MIR SINE MIR -6 256 3 1013 250 38 0 chr12 107782993 107783229 -36003226 + MIR SINE MIR 18 262 0 1377 164 13 0 chr12 107783296 107783521 -36002934 + AluJb SINE Alu 1 228 -84 401 141 31 0 chr12 107783592 107783656 -36002799 + AluJb SINE Alu 233 298 -4 230 0 33 0 chr12 107784026 107784056 -36002399 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1943 166 0 6 chr12 107784069 107784383 -36002072 + AluJb SINE Alu 1 312 0 1616 167 13 51 chr12 107785735 107786046 -36000409 + AluJb SINE Alu 3 301 -11 942 226 56 59 chr12 107787282 107787619 -35998836 - L1ME3A LINE L1 -14 6156 5821 6074 84 41 67 chr12 107787638 107788660 -35997795 - SVA Other Other 0 1386 391 730 274 0 99 chr12 107788711 107789014 -35997441 - L1ME3A LINE L1 -342 5828 5556 24 32 0 0 chr12 107789572 107789603 -35996852 + AT_rich Low_complexity Low_complexity 1 31 0 2323 99 0 10 chr12 107790047 107790360 -35996095 + AluSx SINE Alu 1 310 -2 2094 131 3 10 chr12 107790786 107791100 -35995355 + AluSq SINE Alu 1 312 -1 209 216 20 0 chr12 107792632 107792683 -35993772 + (TAG)n Simple_repeat Simple_repeat 2 53 0 250 309 22 29 chr12 107795017 107795153 -35991302 + (TATATG)n Simple_repeat Simple_repeat 1 135 0 29 28 0 0 chr12 107795522 107795558 -35990897 + AT_rich Low_complexity Low_complexity 1 36 0 813 287 134 27 chr12 107795591 107796068 -35990387 + MLT1H LTR MaLR 22 549 0 806 320 109 19 chr12 107796074 107796542 -35989913 + L2 LINE L2 2804 3313 0 805 215 138 13 chr12 107796616 107796938 -35989517 - MLT1D LTR MaLR -12 487 81 7273 183 25 7 chr12 107796950 107799296 -35987159 + L1PA16 LINE L1 3678 6063 -103 253 53 105 0 chr12 107799303 107799341 -35987114 + L1PA16 LINE L1 6116 6157 -9 28 0 0 0 chr12 107799341 107799369 -35987086 + AT_rich Low_complexity Low_complexity 1 28 0 280 209 60 0 chr12 107799369 107799436 -35987019 - MLT1D LTR MaLR -432 73 3 343 287 156 0 chr12 107799510 107799632 -35986823 + MIR SINE MIR 111 251 -11 529 246 288 5 chr12 107799643 107799834 -35986621 - MIR SINE MIR -5 257 13 1777 162 7 28 chr12 107799887 107800177 -35986278 + AluJb SINE Alu 1 284 -28 1668 189 0 26 chr12 107800202 107800514 -35985941 + AluJb SINE Alu 1 304 -8 209 200 92 46 chr12 107800951 107801016 -35985439 + L2 LINE L2 3190 3257 -56 * 1341 285 86 23 chr12 107801010 107801643 -35984812 + L2 LINE L2 2647 3304 -9 2118 128 0 3 chr12 107801643 107801941 -35984514 + AluSx SINE Alu 3 299 -13 805 153 0 0 chr12 107802405 107802523 -35983932 - MER3 DNA MER1_type -91 118 1 499 278 6 41 chr12 107802642 107802811 -35983644 - L2 LINE L2 -1 3312 3150 704 149 18 0 chr12 107803684 107803798 -35982657 + FRAM SINE Alu 36 151 -25 229 228 61 61 chr12 107804009 107804123 -35982332 + L1M4 LINE L1 4723 4836 -1310 6253 126 60 44 chr12 107804286 107805497 -35980958 - Tigger3b DNA MER2_type 0 1231 2 37 39 0 0 chr12 107805521 107805572 -35980883 + AT_rich Low_complexity Low_complexity 1 51 0 1053 224 122 0 chr12 107805658 107805962 -35980493 + MER2 DNA MER2_type 1 341 -3 249 174 51 92 chr12 107805971 107806069 -35980386 + L1ME4a LINE L1 5991 6084 -37 1806 176 17 7 chr12 107806213 107806515 -35979940 - 7SLRNA srpRNA srpRNA -15 305 1 2596 39 3 0 chr12 107806697 107807007 -35979448 + AluY SINE Alu 1 311 0 332 344 120 53 chr12 107810185 107811291 -35975164 - L2 LINE L2 -384 2930 1751 521 277 147 98 chr12 107811304 107811904 -35974551 + L2 LINE L2 2138 2766 -548 210 305 144 0 chr12 107812294 107812412 -35974043 - L2 LINE L2 -669 2645 2511 426 312 19 57 chr12 107812634 107812791 -35973664 + MIR3 SINE MIR 34 184 -24 2575 88 11 45 chr12 107814404 107814781 -35971674 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr12 107815052 107815077 -35971378 + AT_rich Low_complexity Low_complexity 1 25 0 361 226 0 135 chr12 107815077 107815097 -35971358 - MIR SINE MIR -92 170 149 422 211 32 76 chr12 107815097 107815168 -35971287 + MER104 DNA MER2_type 3 76 -1822 2267 77 0 26 chr12 107815168 107815481 -35970974 - AluY SINE Alu -6 305 1 422 211 32 76 chr12 107815481 107815594 -35970861 + MER104 DNA MER2_type 76 179 -1 361 226 0 135 chr12 107815594 107815706 -35970749 - MIR SINE MIR -113 149 56 231 229 14 0 chr12 107816145 107816215 -35970240 + (TA)n Simple_repeat Simple_repeat 1 71 0 1935 118 0 0 chr12 107816254 107816516 -35969939 - AluSc SINE Alu -12 297 36 273 57 0 0 chr12 107817006 107817041 -35969414 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr12 107817606 107817628 -35968827 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 359 229 32 122 chr12 107819940 107820128 -35966327 - MIR3 SINE MIR -6 202 32 216 130 0 0 chr12 107820699 107820745 -35965710 + (TA)n Simple_repeat Simple_repeat 1 46 0 428 227 83 53 chr12 107821723 107821855 -35964600 - MIR SINE MIR -50 212 77 3157 154 43 2 chr12 107822967 107823473 -35962982 + MER1A DNA MER1_type 1 527 0 202 331 66 25 chr12 107824012 107824133 -35962322 - L2 LINE L2 -1890 1424 1299 193 361 16 0 chr12 107824227 107824288 -35962167 + L2 LINE L2 326 387 -2927 216 231 31 31 chr12 107824403 107824468 -35961987 - L2 LINE L2 0 3313 3249 1722 198 3 16 chr12 107824997 107825320 -35961135 - MLT1C LTR MaLR 0 467 149 3808 57 0 0 chr12 107825900 107826372 -35960083 - L1PA7 LINE L1 -4 6150 5679 6456 69 9 2 chr12 107826372 107827256 -35959199 - L1PA7 LINE L1 -2992 3154 2265 * 12217 56 4 2 chr12 107827254 107828837 -35957618 + L1P LINE L1 3239 4823 -1323 1929 167 0 0 chr12 107830102 107830396 -35956059 - AluSx SINE Alu -16 296 3 988 286 24 0 chr12 107831976 107832231 -35954224 - MIR SINE MIR 0 262 2 2204 112 7 0 chr12 107833297 107833591 -35952864 - AluSx SINE Alu -16 296 1 26 0 0 0 chr12 107833666 107833692 -35952763 + AT_rich Low_complexity Low_complexity 1 26 0 6149 156 35 15 chr12 107833961 107835190 -35951265 - L1 LINE L1 -781 5365 4112 1974 181 24 0 chr12 107835190 107835571 -35950884 + L1 LINE L1 3741 4130 -2016 3672 199 45 15 chr12 107835573 107836715 -35949740 - L1M3 LINE L1 -556 5615 4428 1857 152 0 21 chr12 107836809 107837099 -35949356 + AluJb SINE Alu 1 284 -28 2173 114 10 3 chr12 107837149 107837448 -35949007 + AluSx SINE Alu 2 302 -10 1191 231 111 43 chr12 107837448 107837863 -35948592 + MLT1C LTR MaLR 17 459 -8 269 351 18 9 chr12 107838007 107838118 -35948337 + MIR3 SINE MIR 66 177 -31 2629 164 13 2 chr12 107838332 107838788 -35947667 + LOR1b LTR ERV1 1 461 0 537 245 78 5 chr12 107839191 107839383 -35947072 + L1ME3A LINE L1 5757 5962 -208 1530 216 74 102 chr12 107839600 107840170 -35946285 + MLT2B3 LTR ERVL 1 554 0 28 0 0 0 chr12 107841112 107841140 -35945315 + AT_rich Low_complexity Low_complexity 1 28 0 1736 233 141 52 chr12 107841694 107841783 -35944672 + L1ME3 LINE L1 5374 5454 -708 1576 193 0 25 chr12 107841783 107842099 -35944356 + AluJb SINE Alu 1 308 -4 1736 233 141 52 chr12 107842099 107842127 -35944328 + L1ME3 LINE L1 5454 5478 -684 1610 181 7 11 chr12 107842127 107842414 -35944041 + AluJb SINE Alu 1 286 -26 1736 233 141 52 chr12 107842414 107843020 -35943435 + L1ME3 LINE L1 5478 6162 0 721 185 0 30 chr12 107844080 107844215 -35942240 + FLAM_C SINE Alu 1 131 -2 229 318 0 24 chr12 107844781 107844866 -35941589 + L1MEd LINE L1 269 351 -5768 866 297 78 19 chr12 107846242 107846562 -35939893 - L3 LINE CR1 -13 1564 1226 557 168 0 72 chr12 107846831 107846956 -35939499 + MER33 DNA MER1_type 1 116 -208 334 310 35 26 chr12 107847187 107847303 -35939152 - L3 LINE CR1 -1053 524 408 2146 87 11 7 chr12 107848289 107848586 -35937869 + AluSg SINE Alu 2 299 0 1897 126 45 0 chr12 107848738 107849024 -35937431 + AluSx SINE Alu 1 299 -13 394 302 0 35 chr12 107849319 107849435 -35937020 - MIR SINE MIR -149 113 2 456 299 103 21 chr12 107850453 107850647 -35935808 - MIR SINE MIR 0 262 53 960 91 91 7 chr12 107850830 107850984 -35935471 + L1PA10 LINE L1 5998 6164 -4 197 143 24 24 chr12 107852126 107852168 -35934287 + MIR SINE MIR 38 79 -129 298 290 150 24 chr12 107852271 107852478 -35933977 - MIR SINE MIR -17 245 13 1166 181 148 26 chr12 107852769 107853073 -35933382 + MER58B DNA MER1_type 1 341 0 2103 107 59 0 chr12 107853111 107853401 -35933054 - AluSx SINE Alu -3 309 3 691 221 105 6 chr12 107853453 107853634 -35932821 - MIR SINE MIR -1 261 63 369 299 192 9 chr12 107854264 107854478 -35931977 + MIR SINE MIR 7 259 -3 361 258 73 16 chr12 107854479 107854603 -35931852 - MLT1J LTR MaLR -2 547 417 * 1380 175 191 10 chr12 107854594 107854908 -35931547 - MER68 LTR ERV1 -191 371 1 648 180 25 8 chr12 107854910 107855032 -35931423 - MLT1H LTR MaLR -342 207 84 198 310 90 40 chr12 107855939 107856039 -35930416 - MER5B DNA MER1_type -45 133 29 929 259 46 88 chr12 107856700 107857156 -35929299 - L2 LINE L2 -2 3311 2875 426 259 26 26 chr12 107857209 107857325 -35929130 - L2 LINE L2 -18 3295 3180 308 277 108 0 chr12 107857431 107857514 -35928941 - HAL1 LINE L1 -1994 513 422 314 327 49 62 chr12 107857645 107858033 -35928422 - L1MEd LINE L1 -5720 399 17 1981 122 37 0 chr12 107858070 107858364 -35928091 + AluSx SINE Alu 1 305 -7 1256 259 68 54 chr12 107859974 107860415 -35926040 - MLT1J LTR MaLR -64 447 1 1471 172 124 43 chr12 107863739 107864036 -35922419 + LTR8A LTR ERV1 326 660 -67 1648 174 25 3 chr12 107864036 107864318 -35922137 - AluJo SINE Alu -24 288 1 1471 172 124 43 chr12 107864318 107864392 -35922063 + LTR8A LTR ERV1 660 727 0 301 182 15 30 chr12 107864933 107864999 -35921456 + AluJb SINE Alu 69 133 -169 205 256 124 50 chr12 107865004 107865125 -35921330 - L2 LINE L2 -161 3152 3023 1700 156 28 17 chr12 107865775 107866064 -35920391 + AluJb SINE Alu 11 302 -10 1560 216 24 17 chr12 107866068 107866489 -35919966 - L1M4 LINE L1 -986 5094 4671 1205 286 45 51 chr12 107866492 107867494 -35918961 - L1ME LINE L1 -4785 1297 389 369 220 15 98 chr12 107868166 107868298 -35918157 - MER103 DNA DNA -45 121 1 284 327 53 18 chr12 107868430 107868543 -35917912 - MIR3 SINE MIR 0 208 92 249 333 48 0 chr12 107868738 107868822 -35917633 - LTR67 LTR ERVL -283 274 187 955 248 63 4 chr12 107869726 107869964 -35916491 - MIR SINE MIR 0 262 11 25 0 0 0 chr12 107870179 107870204 -35916251 + AT_rich Low_complexity Low_complexity 1 25 0 412 279 167 12 chr12 107870249 107870489 -35915966 - HAL1 LINE L1 -573 1934 1658 1398 278 119 65 chr12 107870531 107871457 -35914998 - HAL1 LINE L1 -1511 996 21 29 0 0 0 chr12 107871765 107871794 -35914661 + AT_rich Low_complexity Low_complexity 1 29 0 4483 131 27 34 chr12 107872060 107872874 -35913581 - Tigger3b DNA MER2_type -422 809 2 2486 40 0 10 chr12 107872978 107873277 -35913178 + AluY SINE Alu 1 296 -15 331 278 67 33 chr12 107874355 107874535 -35911920 + L1MEd LINE L1 1 186 -5933 560 289 134 9 chr12 107874633 107874969 -35911486 + L1M4 LINE L1 3961 4338 -1808 22 56 0 0 chr12 107874986 107875022 -35911433 + AT_rich Low_complexity Low_complexity 1 36 0 259 361 49 21 chr12 107875553 107875697 -35910758 - MER5B DNA MER1_type -6 172 25 298 286 107 0 chr12 107875902 107875986 -35910469 - MIR SINE MIR -148 114 22 365 289 37 44 chr12 107876368 107876503 -35909952 + MIR SINE MIR 60 193 -69 251 308 93 9 chr12 107877232 107877339 -35909116 + MIR3 SINE MIR 91 206 -2 2336 84 7 3 chr12 107877376 107877675 -35908780 - AluSq SINE Alu -13 300 1 180 111 0 0 chr12 107878129 107878156 -35908299 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 332 333 53 20 chr12 107878716 107878866 -35907589 - MIR SINE MIR -85 177 23 33 0 0 0 chr12 107878881 107878914 -35907541 + AT_rich Low_complexity Low_complexity 1 33 0 200 334 158 41 chr12 107878962 107879330 -35907125 + L2 LINE L2 2562 2972 -342 335 389 89 0 chr12 107879401 107879558 -35906897 + L2 LINE L2 3102 3272 0 259 213 40 0 chr12 107880211 107880286 -35906169 - L1ME4a LINE L1 -11 6110 6033 298 337 54 33 chr12 107880415 107880599 -35905856 - MIR SINE MIR -10 252 65 1125 259 65 19 chr12 107880772 107881142 -35905313 - MLT1B LTR MaLR 0 390 4 1088 213 7 69 chr12 107881814 107882105 -35904350 + AluJo SINE Alu 1 273 -39 197 344 0 0 chr12 107882600 107882664 -35903791 + L2 LINE L2 3246 3309 -4 907 438 145 0 chr12 107882728 107883032 -35903423 - MER7A DNA MER2_type 0 346 1 1296 213 33 33 chr12 107883131 107883432 -35903023 - MLT1A1 LTR MaLR 0 365 65 2138 169 24 45 chr12 107883432 107883852 -35902603 + MER47B DNA MER2_type 1 411 -7 363 88 18 18 chr12 107883865 107883922 -35902533 - MLT1A1 LTR MaLR -371 57 1 244 286 14 0 chr12 107884614 107884684 -35901771 - L2 LINE L2 -1 3312 3242 25 31 0 0 chr12 107884691 107884723 -35901732 + AT_rich Low_complexity Low_complexity 1 32 0 1845 128 100 0 chr12 107885198 107885479 -35900976 + AluSx SINE Alu 1 309 -3 190 300 157 0 chr12 107885489 107885559 -35900896 + L3b LINE CR1 1365 1445 -138 23 33 0 0 chr12 107885559 107885589 -35900866 + AT_rich Low_complexity Low_complexity 1 30 0 1082 112 0 6 chr12 107885597 107885758 -35900697 - L1MA2 LINE L1 -3 6301 6142 268 296 99 0 chr12 107885883 107885964 -35900491 - MIR3 SINE MIR -41 167 79 4747 177 31 26 chr12 107886630 107887066 -35899389 - L1 LINE L1 -2189 3957 3525 1954 137 17 0 chr12 107887066 107887359 -35899096 - AluSx SINE Alu -14 298 1 4747 177 31 26 chr12 107887359 107887974 -35898481 - L1 LINE L1 -2621 3525 2900 21 0 0 0 chr12 107889313 107889334 -35897121 + AT_rich Low_complexity Low_complexity 1 21 0 336 286 64 58 chr12 107890019 107890551 -35895904 + L1ME LINE L1 612 1151 -4919 779 213 112 0 chr12 107890751 107890939 -35895516 + MER3 DNA MER1_type 1 209 0 428 97 0 14 chr12 107891492 107891564 -35894891 - L1MA3 LINE L1 -5 6300 6230 394 231 37 19 chr12 107891694 107891802 -35894653 - L2 LINE L2 0 3313 3204 363 303 68 41 chr12 107892159 107892380 -35894075 - L2 LINE L2 -102 3211 2985 212 347 45 20 chr12 107892446 107892626 -35893829 - MIR SINE MIR 0 262 23 405 295 145 12 chr12 107893690 107893856 -35892599 - MIR SINE MIR -55 207 20 1011 256 27 4 chr12 107893904 107894166 -35892289 - L3 LINE CR1 -628 949 682 34 24 0 0 chr12 107894362 107894403 -35892052 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr12 107894726 107894777 -35891678 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr12 107895080 107895108 -35891347 + AT_rich Low_complexity Low_complexity 1 28 0 1893 274 102 58 chr12 107899920 107900983 -35885472 - L1ME LINE L1 -414 5748 4733 1072 172 48 26 chr12 107900983 107901210 -35885245 - MER46A DNA MER2_type -3 233 2 1893 274 102 58 chr12 107901210 107902363 -35884092 - L1ME LINE L1 -1429 4733 3383 2266 107 0 3 chr12 107902592 107902902 -35883553 + AluSx SINE Alu 1 309 -3 3410 196 64 51 chr12 107903784 107904669 -35881786 - L1ME2 LINE L1 0 6164 5268 2161 207 122 35 chr12 107904708 107905274 -35881181 + MLT2F LTR ERVL 48 662 -1 688 229 13 0 chr12 107905274 107905431 -35881024 + L1M4 LINE L1 3623 3781 -2365 761 287 92 4 chr12 107905545 107905817 -35880638 - L2 LINE L2 -1345 1969 1674 333 0 0 0 chr12 107906165 107906202 -35880253 + (TG)n Simple_repeat Simple_repeat 1 37 0 2021 125 0 26 chr12 107907019 107907324 -35879131 + AluSx SINE Alu 1 297 -15 2272 98 0 16 chr12 107957847 107958162 -35828293 + AluSq SINE Alu 1 310 -3 844 268 77 9 chr12 107958587 107958807 -35827648 - MIR SINE MIR 0 262 28 1600 128 16 4 chr12 107959304 107959577 -35826878 - AluSx SINE Alu 0 313 38 2384 69 0 0 chr12 107960150 107960453 -35826002 + AluY SINE Alu 1 303 -8 886 279 161 19 chr12 107960593 107961268 -35825187 - L1MC4a LINE L1 -844 5302 5127 345 329 56 0 chr12 107962159 107962302 -35824153 - Charlie8 DNA MER1_type -1205 1212 1062 1180 306 82 25 chr12 107962459 107963149 -35823306 - L1ME2 LINE L1 -272 5892 5135 837 254 71 0 chr12 107963149 107963389 -35823066 + MIR SINE MIR 5 261 -1 1180 306 82 25 chr12 107963389 107963660 -35822795 - L1ME2 LINE L1 -1029 5135 4881 230 301 109 41 chr12 107963789 107964155 -35822300 - HAL1b LINE L1 -767 581 191 288 273 91 18 chr12 107964373 107964538 -35821917 - HAL1 LINE L1 -856 1651 1475 2576 220 33 18 chr12 107964547 107964770 -35821685 - MER74A LTR ERVL 0 558 340 1990 203 20 70 chr12 107964770 107965313 -35821142 - MLT2B1 LTR ERVL 0 520 5 2576 220 33 18 chr12 107965313 107965639 -35820816 - MER74A LTR ERVL -218 340 1 1081 307 52 31 chr12 107965649 107966524 -35819931 - L1MEd LINE L1 -4868 1251 452 1716 173 13 3 chr12 107966859 107967165 -35819290 - AluJb SINE Alu -3 309 1 337 366 35 39 chr12 107967258 107967512 -35818943 - HAL1b LINE L1 -955 393 141 22 103 0 0 chr12 107967758 107967836 -35818619 + AT_rich Low_complexity Low_complexity 1 78 0 3173 162 14 0 chr12 107967864 107968382 -35818073 - LTR45 LTR ERV1 0 525 1 25 90 0 0 chr12 107968406 107968473 -35817982 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr12 107968720 107968742 -35817713 + AT_rich Low_complexity Low_complexity 1 22 0 316 321 179 0 chr12 107968864 107968970 -35817485 - L2 LINE L2 -4 3268 3144 264 59 0 0 chr12 107969004 107969038 -35817417 + (TC)n Simple_repeat Simple_repeat 1 34 0 4932 107 26 45 chr12 107969097 107969831 -35816624 - Tigger3(Golem) DNA MER2_type 0 3028 2310 3077 66 22 50 chr12 107969831 107970288 -35816167 - MLT2A1 LTR ERVL 0 444 1 4932 107 26 45 chr12 107970288 107970373 -35816082 - Tigger3(Golem) DNA MER2_type -718 2310 2225 559 171 0 0 chr12 107970371 107970453 -35816002 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 670 257 104 25 chr12 107972715 107972956 -35813499 + MIR SINE MIR 3 262 0 395 375 29 76 chr12 107972959 107973234 -35813221 - L2 LINE L2 -9 3263 3002 2092 156 56 9 chr12 107973242 107973638 -35812817 + MSTB1 LTR MaLR 16 374 0 713 335 47 53 chr12 107973664 107974196 -35812259 - L2 LINE L2 -395 2919 2391 530 277 53 10 chr12 107974280 107974620 -35811835 + MLT1K LTR MaLR 91 472 -116 2163 87 3 13 chr12 107974652 107974961 -35811494 - L1PA10 LINE L1 0 6168 5863 411 233 0 0 chr12 107974961 107975051 -35811404 - L1ME LINE L1 -558 5606 5517 * 12375 174 5 2 chr12 107975047 107977456 -35808999 - L1P3 LINE L1 -2553 3908 1495 6482 32 1 0 chr12 107977470 107978275 -35808180 - L1PA4 LINE L1 -1 6154 5349 3930 214 44 59 chr12 107978275 107978961 -35807494 - L1P3 LINE L1 -4735 1140 445 2053 107 55 60 chr12 107978961 107979327 -35807128 + THE1B LTR MaLR 1 364 0 11917 93 2 1 chr12 107979327 107980904 -35805551 + THE1B-int LTR MaLR 1 1580 0 2176 109 48 31 chr12 107980904 107981262 -35805193 + THE1B LTR MaLR 1 364 0 3930 214 44 59 chr12 107981262 107981407 -35805048 - L1P3 LINE L1 -5428 447 301 180 0 0 0 chr12 107981407 107981427 -35805028 + (CTGTG)n Simple_repeat Simple_repeat 1 20 0 3930 214 44 59 chr12 107981427 107982005 -35804450 - L1P3 LINE L1 -5574 301 2 262 336 16 48 chr12 107982106 107982231 -35804224 - L2 LINE L2 -925 2389 2269 1885 205 94 5 chr12 107982468 107982916 -35803539 + MLT1D LTR MaLR 1 488 -17 1375 189 31 25 chr12 107983031 107983391 -35803064 - L1MB8 LINE L1 -3 6986 6625 1363 151 125 0 chr12 107983395 107983627 -35802828 - AluJb SINE Alu -26 286 26 1418 186 11 0 chr12 107983704 107983973 -35802482 - L1MB8 LINE L1 -492 6497 6226 1806 166 22 67 chr12 107983982 107984386 -35802069 + MLT1B LTR MaLR 2 387 -3 1961 213 36 15 chr12 107984392 107984998 -35801457 - L1MB8 LINE L1 -743 6214 5596 12259 199 31 46 chr12 107985000 107987127 -35799328 - L1PB4 LINE L1 -21 6192 4033 274 98 0 0 chr12 107987127 107987168 -35799287 - MER41A LTR ERV1 -114 440 400 12259 199 31 46 chr12 107987168 107989180 -35797275 - L1PB4 LINE L1 -2180 4033 1906 738 163 7 15 chr12 107989180 107989315 -35797140 + FLAM_C SINE Alu 9 142 -1 12259 199 31 46 chr12 107989315 107990514 -35795941 - L1PB4 LINE L1 -4307 1906 690 257 305 0 0 chr12 107990494 107990576 -35795879 - L1PA15-16 LINE L1 -5280 1569 1488 * 1550 270 31 15 chr12 107990586 107991414 -35795041 - L1MB8 LINE L1 -3536 3421 2625 507 271 82 33 chr12 107991609 107992107 -35794348 - L1M2 LINE L1 -4242 2141 1445 2714 256 69 48 chr12 107992130 107993149 -35793306 - L1MB8 LINE L1 -5276 1583 544 2072 135 52 6 chr12 107993149 107993497 -35792958 + THE1B LTR MaLR 1 364 0 2739 110 46 5 chr12 107993503 107993920 -35792535 + MER57B LTR ERV1 1 434 0 4331 121 20 5 chr12 107993920 107994582 -35791873 + MER57B-int LTR ERV1 1 672 -6865 4042 153 68 23 chr12 107994579 107995299 -35791156 + MER57-int LTR ERV1 288 975 -3905 * 2492 92 0 3 chr12 107995299 107995613 -35790842 + AluSq SINE Alu 1 313 0 4042 153 68 23 chr12 107995613 107996214 -35790241 + MER57-int LTR ERV1 975 1942 -2938 784 101 109 7 chr12 107996209 107996347 -35790108 + MER57-int LTR ERV1 1866 2017 -3929 * 251 106 64 0 chr12 107996343 107996390 -35790065 + MER57-int LTR ERV1 2167 2216 -3730 * 2890 112 44 19 chr12 107996375 107997054 -35789401 + MER57-int LTR ERV1 3336 4162 -3654 7800 13 21 1 chr12 107997071 107998773 -35787682 - L1PA2 LINE L1 -7 6148 4429 32478 39 36 2 chr12 107999074 108003337 -35783118 - L1PA2 LINE L1 -1736 4410 1 4248 154 73 45 chr12 108003337 108004357 -35782098 + MER57-int LTR ERV1 3014 4041 -1905 * 4265 105 26 4 chr12 108004348 108005525 -35780930 + MER57-int LTR ERV1 5307 6547 -990 1303 127 26 9 chr12 108005529 108005757 -35780698 + MER57B LTR ERV1 203 434 0 289 261 109 0 chr12 108005758 108005877 -35780578 - L1MB8 LINE L1 -6314 545 414 270 213 85 21 chr12 108007093 108007187 -35779268 + MLT1I LTR MaLR 307 406 -3 217 163 23 0 chr12 108007802 108007845 -35778610 + GA-rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 108007964 108007986 -35778469 + (TG)n Simple_repeat Simple_repeat 1 22 0 475 74 25 0 chr12 108007986 108008067 -35778388 + (GA)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr12 108008311 108008334 -35778121 + AT_rich Low_complexity Low_complexity 1 23 0 716 333 156 46 chr12 108009047 108009567 -35776888 + L3 LINE CR1 931 1507 -70 577 275 94 6 chr12 108009659 108009830 -35776625 + MIR SINE MIR 8 193 -69 416 224 10 0 chr12 108011052 108011150 -35775305 - MLT1I LTR MaLR -2 407 309 1586 112 27 0 chr12 108011188 108011411 -35775044 + MER30 DNA MER1_type 2 230 0 1696 144 74 0 chr12 108012960 108013244 -35773211 + AluSx SINE Alu 2 306 -6 536 125 0 100 chr12 108013275 108013395 -35773060 + MER50 LTR ERV1 497 604 -130 222 320 77 81 chr12 108013569 108013803 -35772652 - L2 LINE L2 -173 3099 2867 309 214 51 61 chr12 108013878 108013976 -35772479 + MIR SINE MIR 100 196 -66 728 191 7 0 chr12 108014324 108014460 -35771995 - MSTC LTR MaLR 0 428 292 206 121 0 52 chr12 108014460 108014518 -35771937 + (T)n Simple_repeat Simple_repeat 1 55 0 3235 34 0 3 chr12 108014519 108014903 -35771552 - L1PA3 LINE L1 -3 6152 5770 1194 153 48 35 chr12 108014903 108015132 -35771323 - MSTC LTR MaLR -137 291 60 2269 117 13 61 chr12 108015132 108015526 -35770929 + THE1C LTR MaLR 1 375 0 3243 90 73 85 chr12 108015526 108016139 -35770316 + THE1C-int LTR MaLR 1 606 -974 2215 111 0 3 chr12 108016159 108016483 -35769972 + THE1C LTR MaLR 50 372 -3 256 153 203 0 chr12 108016486 108016545 -35769910 - MSTC LTR MaLR -386 71 1 346 349 121 0 chr12 108017448 108017597 -35768858 - L2 LINE L2 -4 3268 3102 570 178 0 71 chr12 108017726 108017893 -35768562 - HERVL LTR ERVL -2609 3082 2946 498 211 83 69 chr12 108018056 108018274 -35768181 - LTR33 LTR ERVL 0 521 301 6038 178 32 12 chr12 108018300 108020114 -35766341 + ERVL LTR ERVL 1750 3647 -2117 924 255 60 14 chr12 108020117 108020399 -35766056 - MSTB2 LTR MaLR -2 455 161 1938 184 3 0 chr12 108020488 108020797 -35765658 - AluJb SINE Alu -2 310 1 380 237 21 0 chr12 108020799 108020892 -35765563 - MSTB2 LTR MaLR -301 95 1 1315 139 17 78 chr12 108020892 108021221 -35765234 + ERVL LTR ERVL 3604 5028 -736 1166 234 9 102 chr12 108021225 108021666 -35764789 + MLT2B1 LTR ERVL 121 520 0 1693 185 42 45 chr12 108021670 108022210 -35764245 + MLT-int LTR MaLR 5 654 -1081 2085 199 19 14 chr12 108022565 108022983 -35763472 + MLT1B-int LTR MaLR 1316 1735 0 294 200 0 15 chr12 108022986 108023051 -35763404 + MLT1B LTR MaLR 4 67 -307 407 237 8 30 chr12 108023180 108023311 -35763144 + MLT1B LTR MaLR 263 390 0 2224 243 86 18 chr12 108023320 108024882 -35761573 - L1MEc LINE L1 -3518 3423 1807 2413 168 23 64 chr12 108024930 108025447 -35761008 - MLT1D LTR MaLR -1 504 9 1485 221 130 39 chr12 108025482 108025943 -35760512 + MLT1D LTR MaLR 3 505 0 2170 247 52 35 chr12 108025943 108026644 -35759811 - L1MEc LINE L1 -4899 1524 809 2670 35 0 16 chr12 108027061 108027375 -35759080 + AluY SINE Alu 1 309 -2 1139 282 49 3 chr12 108027420 108027806 -35758649 - L1MEc LINE L1 -5948 475 72 232 250 105 0 chr12 108027836 108027912 -35758543 - L1MEc LINE L1 -6323 100 17 1070 313 23 67 chr12 108027973 108028538 -35757917 + L2 LINE L2 2330 2869 -445 1602 184 3 27 chr12 108029011 108029304 -35757151 - AluJo SINE Alu -19 293 8 207 186 0 0 chr12 108029324 108029367 -35757088 + CT-rich Low_complexity Low_complexity 2 44 0 181 318 0 30 chr12 108029412 108029478 -35756977 + L3 LINE CR1 1414 1477 -100 203 299 11 46 chr12 108029486 108029573 -35756882 - L2 LINE L2 0 3272 3189 219 287 11 53 chr12 108029776 108029870 -35756585 + MIR SINE MIR 59 148 -114 1848 172 7 0 chr12 108030391 108030693 -35755762 - AluJo SINE Alu -8 304 1 362 223 117 11 chr12 108030813 108030907 -35755548 - MIR SINE MIR -58 150 47 216 143 0 0 chr12 108031185 108031227 -35755228 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr12 108031258 108031286 -35755169 + AT_rich Low_complexity Low_complexity 1 28 0 612 259 36 0 chr12 108031379 108031518 -35754937 + MER63 DNA MER1_type 1 770 -66 1538 139 49 11 chr12 108032382 108032648 -35753807 - AluJo SINE Alu -16 296 21 287 286 14 55 chr12 108032941 108033158 -35753297 - AluJo SINE Alu -94 208 1 593 210 71 51 chr12 108033212 108033699 -35752756 + MLT1G1 LTR MaLR 11 592 -3 3734 216 34 28 chr12 108034538 108035327 -35751128 - L1ME1 LINE L1 -5 6161 5360 1901 157 146 29 chr12 108035327 108035710 -35750745 + MSTA LTR MaLR 1 428 0 3734 216 34 28 chr12 108035710 108035917 -35750538 - L1ME1 LINE L1 -806 5360 5156 404 329 155 18 chr12 108037111 108037330 -35749125 + MIR SINE MIR 12 260 -2 279 313 0 0 chr12 108038706 108038773 -35747682 + L2 LINE L2 3201 3267 -5 814 229 6 12 chr12 108039372 108039542 -35746913 - MER5A DNA MER1_type -3 186 18 2108 173 35 39 chr12 108040792 108041346 -35745109 - MLT2A2 LTR ERVL 0 554 1 2512 250 9 14 chr12 108041433 108041944 -35744511 + MLT2B3 LTR ERVL 6 515 -39 465 66 0 0 chr12 108041944 108042005 -35744450 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2512 250 9 14 chr12 108042005 108042045 -35744410 + MLT2B3 LTR ERVL 515 554 0 1375 289 140 12 chr12 108042086 108043048 -35743407 - L2 LINE L2 -2 3311 2214 21 0 0 0 chr12 108043259 108043280 -35743175 + AT_rich Low_complexity Low_complexity 1 21 0 2193 117 15 35 chr12 108043535 108043878 -35742577 - THE1C LTR MaLR -2 373 38 9329 123 46 42 chr12 108043878 108045399 -35741056 - THE1C-int LTR MaLR -53 1527 1 2210 132 20 14 chr12 108045411 108045760 -35740695 - THE1C LTR MaLR -24 351 1 364 317 35 7 chr12 108045762 108045907 -35740548 + MARNA DNA Mariner 364 512 -74 189 0 0 0 chr12 108046114 108046135 -35740320 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 271 271 0 14 chr12 108047774 108047844 -35738611 - MIR SINE MIR -6 256 188 2243 133 95 18 chr12 108048078 108048469 -35737986 - MSTA LTR MaLR 0 428 8 1267 222 47 11 chr12 108048633 108048967 -35737488 + MLT1I LTR MaLR 63 409 0 715 279 45 20 chr12 108049074 108049275 -35737180 + MIR SINE MIR 5 210 -52 263 179 54 0 chr12 108049373 108049429 -35737026 + MIR3 SINE MIR 147 205 -3 952 194 5 43 chr12 108051489 108051700 -35734755 - MSTD LTR MaLR 0 396 194 504 153 16 8 chr12 108051700 108051824 -35734631 + GA-rich Low_complexity Low_complexity 2 126 0 23 0 0 0 chr12 108051839 108051862 -35734593 + AT_rich Low_complexity Low_complexity 1 23 0 836 171 9 4 chr12 108051904 108052048 -35734407 - MSTD LTR MaLR -264 132 4 338 240 87 19 chr12 108052048 108052152 -35734303 + MIR SINE MIR 68 178 -84 2883 86 16 0 chr12 108052521 108052895 -35733560 + MLT2A2 LTR ERVL 1 380 -73 985 238 178 72 chr12 108053596 108054028 -35732427 + LTR33A LTR ERVL 46 523 0 514 330 54 47 chr12 108054466 108054724 -35731731 + LTR67 LTR ERVL 219 478 -79 1134 329 88 24 chr12 108054908 108055620 -35730835 + ERVL LTR ERVL 4028 4828 -936 601 309 101 25 chr12 108055709 108056075 -35730380 + ERVL LTR ERVL 4967 5360 -404 1003 281 110 20 chr12 108056164 108056688 -35729767 + L2 LINE L2 2737 3311 -2 900 254 128 37 chr12 108058017 108058408 -35728047 + MER77 LTR ERV1 194 599 -6 2606 104 3 6 chr12 108058972 108059317 -35727138 - THE1C LTR MaLR 0 375 32 256 80 260 0 chr12 108059328 108059378 -35727077 - THE1C LTR MaLR -312 63 1 10817 109 31 41 chr12 108059378 108060975 -35725480 - THE1C-int LTR MaLR 0 1580 1 2160 106 3 7 chr12 108060975 108061267 -35725188 - THE1C LTR MaLR 0 375 85 3695 112 32 8 chr12 108061455 108061989 -35724466 + L1PA16 LINE L1 5615 6161 -5 288 0 0 0 chr12 108062039 108062071 -35724384 + (TG)n Simple_repeat Simple_repeat 1 32 0 393 75 0 0 chr12 108062274 108062327 -35724128 + (TG)n Simple_repeat Simple_repeat 2 54 0 2545 127 14 11 chr12 108062682 108063045 -35723410 + THE1B LTR MaLR 1 364 0 224 198 86 78 chr12 108063051 108063167 -35723288 - MER5A DNA MER1_type -5 184 68 23 0 0 0 chr12 108063167 108063190 -35723265 + AT_rich Low_complexity Low_complexity 1 23 0 462 275 133 87 chr12 108063517 108063862 -35722593 - L2 LINE L2 -1 3271 2911 382 329 12 30 chr12 108063906 108064070 -35722385 + MER5A DNA MER1_type 1 161 -28 716 200 39 61 chr12 108064087 108064267 -35722188 - MER5B DNA MER1_type 0 178 3 446 288 57 116 chr12 108065291 108065479 -35720976 - MIR3 SINE MIR -26 182 3 234 389 8 23 chr12 108066091 108066222 -35720233 + MIR3 SINE MIR 63 191 -17 185 343 0 55 chr12 108066238 108066311 -35720144 - L3 LINE CR1 -3 1574 1506 1390 226 72 16 chr12 108066501 108066864 -35719591 - L1ME3 LINE L1 -7 6155 5773 275 349 191 0 chr12 108066908 108067034 -35719421 + MIR3 SINE MIR 38 187 -21 312 191 53 11 chr12 108067090 108067184 -35719271 + L1M4 LINE L1 5232 5329 -817 447 269 15 8 chr12 108068455 108068585 -35717870 + MIR SINE MIR 117 247 -15 181 310 30 60 chr12 108068616 108068716 -35717739 - MIR SINE MIR -70 138 42 570 331 28 20 chr12 108069621 108069875 -35716580 + MIR SINE MIR 3 258 -4 285 29 0 0 chr12 108069907 108069941 -35716514 + (TG)n Simple_repeat Simple_repeat 1 34 0 471 243 9 36 chr12 108070067 108070178 -35716277 - L2 LINE L2 -9 3263 3156 1586 179 23 20 chr12 108072710 108073012 -35713443 - AluJb SINE Alu -9 303 1 383 319 86 62 chr12 108073016 108073354 -35713101 + L2 LINE L2 1310 1655 -1659 2789 82 0 36 chr12 108073354 108073744 -35712711 - L1PB1 LINE L1 0 6151 5776 6001 179 11 4 chr12 108073773 108075441 -35711014 - L1PB1 LINE L1 -360 5791 4010 187 350 138 12 chr12 108075441 108075687 -35710768 + L2 LINE L2 1644 1920 -1394 4911 171 36 2 chr12 108075757 108076999 -35709456 - L1MCa LINE L1 -5080 1346 21 1600 185 40 61 chr12 108077039 108077515 -35708940 - MLT1C LTR MaLR -1 466 1 316 291 50 50 chr12 108077583 108077762 -35708693 - L2 LINE L2 -768 2546 2368 493 281 97 40 chr12 108077794 108078022 -35708433 + MIR SINE MIR 1 241 -21 1216 146 64 39 chr12 108078534 108078814 -35707641 - MER33 DNA MER1_type 0 324 38 222 289 105 0 chr12 108079185 108079261 -35707194 + L2 LINE L2 3184 3267 -5 231 293 0 0 chr12 108080224 108080282 -35706173 + tRNA-Ile-ATT tRNA tRNA 17 74 -3 1357 75 0 21 chr12 108081809 108081995 -35704460 + L1PA7 LINE L1 5973 6154 0 209 227 0 0 chr12 108082079 108082123 -35704332 + (TAA)n Simple_repeat Simple_repeat 1 44 0 282 323 124 12 chr12 108082491 108082652 -35703803 - MIR SINE MIR -74 188 10 1041 268 93 38 chr12 108082663 108082730 -35703725 - LTR33A LTR ERVL 0 523 461 1669 144 9 92 chr12 108082730 108083056 -35703399 - AluJo SINE Alu -7 305 7 1041 268 93 38 chr12 108083056 108083484 -35702971 - LTR33A LTR ERVL -62 461 1 1950 205 73 15 chr12 108084489 108085035 -35701420 - MER20B DNA MER1_type 0 783 206 648 308 30 17 chr12 108085720 108085957 -35700498 + MIR SINE MIR 13 252 -10 21 0 0 0 chr12 108087576 108087597 -35698858 + AT_rich Low_complexity Low_complexity 1 21 0 2254 106 0 3 chr12 108088420 108088721 -35697734 + AluSg SINE Alu 1 300 -10 204 111 0 0 chr12 108089586 108089622 -35696833 + (A)n Simple_repeat Simple_repeat 1 36 0 216 97 0 0 chr12 108090278 108090309 -35696146 + (T)n Simple_repeat Simple_repeat 1 31 0 387 41 0 0 chr12 108090607 108090656 -35695799 + (TG)n Simple_repeat Simple_repeat 2 50 0 185 323 31 31 chr12 108091444 108091540 -35694915 + L2 LINE L2 3209 3304 -9 21 57 0 0 chr12 108092118 108092153 -35694302 + AT_rich Low_complexity Low_complexity 1 35 0 668 127 15 60 chr12 108092666 108092800 -35693655 - MIR SINE MIR -74 188 61 27 0 0 0 chr12 108093727 108093754 -35692701 + AT_rich Low_complexity Low_complexity 1 27 0 790 267 51 9 chr12 108094601 108094818 -35691637 + MIR SINE MIR 37 262 0 1664 156 3 49 chr12 108094963 108095271 -35691184 - AluJb SINE Alu -18 294 1 481 286 17 0 chr12 108095289 108095408 -35691047 + L2 LINE L2 3192 3312 -1 2274 94 0 3 chr12 108096245 108096544 -35689911 - AluSg SINE Alu 0 310 13 2173 106 3 3 chr12 108096576 108096887 -35689568 - AluSx SINE Alu 0 311 1 2462 96 0 3 chr12 108098311 108098623 -35687832 + AluSx SINE Alu 2 312 0 221 294 44 73 chr12 108098688 108098824 -35687631 - MIR SINE MIR -50 212 81 346 363 46 39 chr12 108098850 108099109 -35687346 - MIR SINE MIR 0 262 2 412 306 64 58 chr12 108100162 108100492 -35685963 + LTR16B LTR ERVL 122 453 -11 457 276 14 41 chr12 108100506 108100651 -35685804 + MIR SINE MIR 51 191 -71 373 289 59 37 chr12 108100822 108100957 -35685498 + L2 LINE L2 3132 3269 -3 466 343 85 8 chr12 108101130 108101366 -35685089 + MIR SINE MIR 8 261 -1 219 69 0 0 chr12 108103890 108103919 -35682536 + (CA)n Simple_repeat Simple_repeat 1 29 0 359 380 21 5 chr12 108105379 108105571 -35680884 - L3 LINE CR1 -1 1576 1382 197 324 0 15 chr12 108105583 108105651 -35680804 - MIR SINE MIR 0 262 196 263 102 0 20 chr12 108105678 108105727 -35680728 + (CA)n Simple_repeat Simple_repeat 1 48 0 816 258 32 0 chr12 108105729 108105915 -35680540 - MIR SINE MIR -70 192 1 2120 123 0 7 chr12 108105930 108106223 -35680232 - AluSx SINE Alu -21 291 1 193 231 0 0 chr12 108106270 108106309 -35680146 + L2 LINE L2 3254 3292 -21 558 29 0 0 chr12 108106738 108106806 -35679649 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 689 43 0 21 chr12 108107032 108107126 -35679329 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 285 266 138 21 chr12 108108061 108108155 -35678300 + MIR3 SINE MIR 104 208 0 1888 169 15 57 chr12 108108278 108108685 -35677770 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr12 108108986 108109017 -35677438 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 108109057 108109082 -35677373 + AT_rich Low_complexity Low_complexity 1 25 0 570 288 52 34 chr12 108110558 108110791 -35675664 - MIR SINE MIR -21 241 5 413 285 17 25 chr12 108111674 108111813 -35674642 - MIR SINE MIR -60 148 11 587 262 30 18 chr12 108111823 108111991 -35674464 + MIR SINE MIR 80 249 -13 585 331 84 34 chr12 108114318 108114581 -35671874 + L3 LINE CR1 1295 1570 -7 261 0 0 0 chr12 108114759 108114788 -35671667 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr12 108114942 108114966 -35671489 + AT_rich Low_complexity Low_complexity 1 24 0 711 242 104 22 chr12 108117657 108117888 -35668567 + MIR SINE MIR 13 262 0 203 208 14 56 chr12 108118326 108118398 -35668057 + CT-rich Low_complexity Low_complexity 2 70 0 205 152 0 0 chr12 108119321 108119354 -35667101 + GA-rich Low_complexity Low_complexity 2 34 0 206 346 67 0 chr12 108119572 108119676 -35666779 + MIR3 SINE MIR 70 180 -28 520 301 36 15 chr12 108122916 108123112 -35663343 - MIR SINE MIR -3 259 60 704 283 31 21 chr12 108123651 108123941 -35662514 - L1ME4a LINE L1 -218 5903 5611 543 40 54 0 chr12 108124271 108124345 -35662110 + L1PA4 LINE L1 6067 6144 -11 318 26 0 0 chr12 108124347 108124386 -35662069 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr12 108124389 108124417 -35662038 + AT_rich Low_complexity Low_complexity 1 28 0 237 309 15 0 chr12 108124748 108124816 -35661639 - L2 LINE L2 -24 3289 3221 185 286 0 0 chr12 108125106 108125148 -35661307 + L2 LINE L2 3141 3182 -90 287 307 114 9 chr12 108125317 108125431 -35661024 + MIR SINE MIR 117 242 -20 255 271 29 0 chr12 108125491 108125561 -35660894 + MIR SINE MIR 4 75 -187 7151 18 11 6 chr12 108125648 108126469 -35659986 - L1PA2 LINE L1 0 6155 5331 24 77 0 0 chr12 108126497 108126549 -35659906 + AT_rich Low_complexity Low_complexity 1 52 0 * 733 163 7 48 chr12 108126545 108126692 -35659763 - MER2 DNA MER2_type -139 206 66 220 273 182 0 chr12 108126693 108126803 -35659652 + MIR SINE MIR 70 199 -63 204 183 197 56 chr12 108127044 108127115 -35659340 - MIR SINE MIR -85 177 97 727 247 7 7 chr12 108127262 108127416 -35659039 - MER5A DNA MER1_type -1 188 35 28 0 0 0 chr12 108128192 108128220 -35658235 + AT_rich Low_complexity Low_complexity 1 28 0 709 120 8 0 chr12 108128896 108129013 -35657442 - L1 LINE L1 -938 5208 5091 2558 129 15 2 chr12 108129022 108129416 -35657039 + L1MA6 LINE L1 5896 6294 -6 404 290 85 77 chr12 108130335 108130607 -35655848 + L2 LINE L2 3027 3300 -13 668 309 141 29 chr12 108131181 108131599 -35654856 + L3b LINE CR1 1108 1572 -11 464 344 16 16 chr12 108131886 108132072 -35654383 - MIR3 SINE MIR -7 201 16 228 309 111 39 chr12 108132165 108132346 -35654109 + MIR3 SINE MIR 14 207 -1 192 333 78 14 chr12 108132757 108132898 -35653557 + L2 LINE L2 2416 2565 -749 570 329 0 0 chr12 108133215 108133373 -35653082 - MIR SINE MIR -58 204 47 1874 187 3 0 chr12 108133406 108133747 -35652708 - AluJb SINE Alu 0 343 2 287 286 100 21 chr12 108134348 108134488 -35651967 - MIR SINE MIR -2 260 110 1196 279 71 55 chr12 108134623 108135100 -35651355 + MLT1J LTR MaLR 3 487 -24 2061 128 3 10 chr12 108135308 108135626 -35650829 - AluSx SINE Alu 0 312 1 223 125 50 0 chr12 108136016 108136056 -35650399 - L2 LINE L2 -5 3308 3267 183 419 52 26 chr12 108136192 108136347 -35650108 - L2 LINE L2 -15 3257 3099 19725 92 9 1 chr12 108136468 108139218 -35647237 - L1PA7 LINE L1 -1225 4921 2150 2643 90 5 0 chr12 108139214 108139590 -35646865 + L1PA7 LINE L1 4934 5315 -836 * 5502 13 2 0 chr12 108139589 108140202 -35646253 + L1HS LINE L1 5542 6155 0 6859 73 8 0 chr12 108140202 108141053 -35645402 + L1PA7 LINE L1 5293 6153 -1 366 229 19 57 chr12 108143219 108143260 -35643195 + L2 LINE L2 3199 3240 -73 2130 135 66 33 chr12 108143260 108143480 -35642975 + THE1C LTR MaLR 1 239 -136 2879 13 0 0 chr12 108143480 108143790 -35642665 + AluY SINE Alu 1 310 -1 2130 135 66 33 chr12 108143790 108143932 -35642523 + THE1C LTR MaLR 239 375 0 366 229 19 57 chr12 108143932 108143995 -35642460 + L2 LINE L2 3240 3299 -14 236 362 35 17 chr12 108144910 108145026 -35641429 - L2 LINE L2 0 3272 3155 880 254 31 9 chr12 108145282 108145506 -35640949 + MIR SINE MIR 33 261 -1 414 0 0 0 chr12 108147721 108147767 -35638688 + (TG)n Simple_repeat Simple_repeat 2 47 0 192 323 65 32 chr12 108150150 108150212 -35636243 - L2 LINE L2 -62 3210 3147 353 290 19 28 chr12 108150586 108150693 -35635762 - Charlie8 DNA MER1_type -2311 106 1 296 316 51 32 chr12 108151574 108151732 -35634723 - Charlie8 DNA MER1_type -2228 189 29 197 341 80 11 chr12 108152534 108152622 -35633833 - MIR SINE MIR -85 123 30 186 281 185 37 chr12 108153457 108153592 -35632863 + MER5A DNA MER1_type 7 161 -28 379 317 35 14 chr12 108155347 108155489 -35630966 + MIR3 SINE MIR 57 201 -7 410 259 74 7 chr12 108156839 108156981 -35629474 - MIR SINE MIR -63 145 38 2212 99 0 0 chr12 108157154 108157487 -35628968 + AluSx SINE Alu 1 333 0 1145 196 9 19 chr12 108157842 108158056 -35628399 + MER20 DNA MER1_type 8 219 0 1978 151 0 13 chr12 108158121 108158432 -35628023 + AluJb SINE Alu 3 309 -3 304 193 53 0 chr12 108159342 108159399 -35627056 + MIR SINE MIR 66 125 -83 261 250 0 0 chr12 108159428 108159496 -35626959 - L1PB4 LINE L1 -2 6154 6087 1006 216 60 22 chr12 108161581 108161813 -35624642 - MIR SINE MIR -2 260 20 320 359 55 8 chr12 108162794 108162922 -35623533 - MIR3 SINE MIR -19 189 56 327 370 126 22 chr12 108163250 108163480 -35622975 - L3b LINE CR1 -9 1574 1321 240 170 0 0 chr12 108164503 108164556 -35621899 + (CAATT)n Simple_repeat Simple_repeat 2 54 0 185 301 60 53 chr12 108164778 108164911 -35621544 + L2 LINE L2 3179 3312 -1 306 0 0 0 chr12 108167910 108167944 -35618511 + (GA)n Simple_repeat Simple_repeat 1 34 0 180 111 0 0 chr12 108169485 108169512 -35616943 + (T)n Simple_repeat Simple_repeat 1 27 0 246 235 47 0 chr12 108169741 108169826 -35616629 + A-rich Low_complexity Low_complexity 2 90 0 195 146 0 0 chr12 108171388 108171429 -35615026 + (CA)n Simple_repeat Simple_repeat 2 42 0 375 23 0 0 chr12 108172847 108172891 -35613564 + (TG)n Simple_repeat Simple_repeat 1 44 0 207 305 93 17 chr12 108173550 108173668 -35612787 - L2 LINE L2 -9 3263 3137 263 270 180 0 chr12 108176369 108176469 -35609986 + L2 LINE L2 3193 3310 -3 738 222 102 115 chr12 108176723 108176893 -35609562 - MER113 DNA MER1_type? -57 464 293 1105 92 0 0 chr12 108176893 108177035 -35609420 - L1MA1 LINE L1 0 6302 6161 738 222 102 115 chr12 108177035 108177333 -35609122 - MER113 DNA MER1_type? -228 293 2 258 323 40 60 chr12 108177505 108177706 -35608749 - L2 LINE L2 -211 3061 2865 2379 85 0 10 chr12 108178378 108178685 -35607770 + AluSp SINE Alu 3 306 -7 2127 167 63 23 chr12 108178838 108179233 -35607222 - MLT2D LTR ERVL 0 414 4 21033 96 3 9 chr12 108179993 108183620 -35602835 - L1PA7 LINE L1 -4 6150 2523 10475 112 22 12 chr12 108183620 108185586 -35600869 - L1P3 LINE L1 -3693 2768 766 287 289 0 13 chr12 108186026 108186102 -35600353 + L2 LINE L2 3226 3300 -13 234 220 20 0 chr12 108186235 108186285 -35600170 + L2 LINE L2 3221 3271 -1 * 258 311 34 42 chr12 108186282 108186401 -35600054 - MIR SINE MIR -129 133 16 232 336 80 16 chr12 108189347 108189472 -35596983 - L2 LINE L2 0 3272 3140 2609 318 51 31 chr12 108190103 108191186 -35595269 + L2 LINE L2 163 1266 -2048 4316 153 63 8 chr12 108191338 108192116 -35594339 + L1MA7 LINE L1 5471 6291 0 744 213 14 7 chr12 108192208 108192349 -35594106 - MER5A DNA MER1_type -8 181 40 190 278 28 14 chr12 108192466 108192538 -35593917 - L2 LINE L2 -1468 1846 1774 1271 160 148 0 chr12 108192556 108192800 -35593655 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr12 108192800 108192829 -35593626 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 888 104 0 0 chr12 108193096 108193221 -35593234 - AluSg/x SINE Alu -5 307 183 477 301 119 14 chr12 108193224 108193510 -35592945 - L2 LINE L2 -1887 1427 1112 194 297 44 55 chr12 108193999 108194090 -35592365 + L2 LINE L2 3223 3312 -1 280 221 63 36 chr12 108194146 108194255 -35592200 + L1P4 LINE L1 5504 5612 -544 644 135 277 14 chr12 108194271 108194412 -35592043 - MSTD LTR MaLR 0 396 219 324 359 41 47 chr12 108195156 108195476 -35590979 + L2 LINE L2 2540 2857 -457 1320 265 28 39 chr12 108195858 108196292 -35590163 - LTR16A LTR ERVL -2 448 20 243 316 0 0 chr12 108196313 108196370 -35590085 + MIR SINE MIR 23 79 -183 877 235 77 8 chr12 108196372 108196713 -35589742 - MLT1G1 LTR MaLR 0 595 166 825 202 27 38 chr12 108196725 108196908 -35589547 + MSTD LTR MaLR 1 181 -215 484 125 0 0 chr12 108196904 108196976 -35589479 + MSTD LTR MaLR 325 396 0 * 421 171 0 0 chr12 108196988 108197058 -35589397 - MLT1G1 LTR MaLR -525 70 1 2206 118 3 3 chr12 108197589 108197902 -35588553 - AluSq SINE Alu 0 313 1 630 292 36 51 chr12 108198272 108198608 -35587847 - MLT1G1-int LTR MaLR -796 575 245 1658 244 177 15 chr12 108198697 108198939 -35587516 - MLT1G1 LTR MaLR -6 589 388 2344 136 33 25 chr12 108198939 108199299 -35587156 + THE1B LTR MaLR 1 363 -1 1658 244 177 15 chr12 108199299 108199519 -35586936 - MLT1G1 LTR MaLR -207 388 52 212 97 0 0 chr12 108199548 108199579 -35586876 + MIR SINE MIR 94 124 -138 * 225 302 116 0 chr12 108199574 108199660 -35586795 - L3 LINE CR1 -463 1114 1019 1315 179 18 39 chr12 108199679 108199908 -35586547 + MER58A DNA MER1_type 1 224 0 351 231 0 65 chr12 108199923 108200031 -35586424 - MIR3 SINE MIR -9 199 99 843 86 0 0 chr12 108200051 108200156 -35586299 + AluSq/x SINE Alu 44 148 -164 305 254 79 79 chr12 108200233 108200410 -35586045 - MER5B DNA MER1_type 0 178 2 426 280 9 0 chr12 108201399 108201506 -35584949 + MER81 DNA DNA 7 114 0 338 361 8 8 chr12 108201949 108202071 -35584384 + MIR3 SINE MIR 72 193 -15 440 239 46 8 chr12 108202358 108202488 -35583967 - L1ME4a LINE L1 -8 6113 5979 339 294 89 67 chr12 108202497 108202687 -35583768 - L1ME4a LINE L1 -211 5910 5726 1412 223 7 23 chr12 108202687 108202987 -35583468 + AluJo SINE Alu 1 295 -17 339 294 89 67 chr12 108202987 108203167 -35583288 - L1ME4a LINE L1 -395 5726 5532 409 297 68 26 chr12 108203588 108203780 -35582675 - MIR SINE MIR -52 210 11 1970 221 3 6 chr12 108205252 108205618 -35580837 + MLT1A1 LTR MaLR 1 365 0 794 297 110 23 chr12 108205727 108206365 -35580090 - L2 LINE L2 -1 3312 2622 21 0 0 0 chr12 108206593 108206614 -35579841 + AT_rich Low_complexity Low_complexity 1 21 0 335 303 8 16 chr12 108206640 108206762 -35579693 - L2 LINE L2 -1 3312 3192 1531 145 21 48 chr12 108206802 108207092 -35579363 + L1MA10 LINE L1 6041 6322 -12 814 243 65 109 chr12 108207454 108207917 -35578538 + L1MC5 LINE L1 7256 7681 -280 2205 120 35 27 chr12 108207917 108208283 -35578172 + L1MB3 LINE L1 5815 6183 0 814 243 65 109 chr12 108208283 108208486 -35577969 + L1MC5 LINE L1 7681 7892 -69 708 240 16 49 chr12 108208807 108208990 -35577465 + MER5B DNA MER1_type 1 177 -1 181 239 43 0 chr12 108209001 108209047 -35577408 + L2 LINE L2 3224 3271 -1 189 74 0 0 chr12 108209777 108209804 -35576651 + (TG)n Simple_repeat Simple_repeat 2 28 0 848 132 176 0 chr12 108209865 108210024 -35576431 + MER53 DNA DNA 1 187 -2 763 273 114 51 chr12 108210182 108210610 -35575845 - MLT1H LTR MaLR 0 549 95 1228 293 89 45 chr12 108211087 108211636 -35574819 - MLT1K LTR MaLR -5 583 11 372 318 16 39 chr12 108211994 108212123 -35574332 + L2 LINE L2 3142 3267 -5 1966 157 3 10 chr12 108212521 108212834 -35573621 + AluJb SINE Alu 1 311 -1 216 111 0 0 chr12 108213668 108213704 -35572751 + (T)n Simple_repeat Simple_repeat 1 36 0 490 262 101 0 chr12 108214194 108214362 -35572093 + MIR SINE MIR 63 247 -15 195 245 0 0 chr12 108214851 108214900 -35571555 - MIR3 SINE MIR 0 208 160 277 125 0 0 chr12 108214905 108214945 -35571510 + MER20 DNA MER1_type 177 216 -3 526 328 21 11 chr12 108215028 108215217 -35571238 - MLT1L LTR MaLR -28 587 397 823 169 11 0 chr12 108215291 108215468 -35570987 + GA-rich Low_complexity Low_complexity 2 180 0 530 222 9 0 chr12 108215706 108215814 -35570641 - MER20 DNA MER1_type -3 216 108 1121 321 188 15 chr12 108215824 108216942 -35569513 - L2 LINE L2 -448 2866 1556 447 273 36 7 chr12 108217102 108217241 -35569214 + MER103 DNA DNA 3 145 -21 2261 82 6 25 chr12 108217618 108217935 -35568520 + AluY SINE Alu 1 311 0 524 265 77 12 chr12 108218259 108218429 -35568026 - MER5A DNA MER1_type -8 181 1 189 0 0 0 chr12 108218534 108218555 -35567900 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 232 290 32 32 chr12 108218561 108218654 -35567801 + MIR SINE MIR 114 206 -56 194 255 39 0 chr12 108218703 108218754 -35567701 - L3 LINE CR1 -2 1575 1523 221 303 101 11 chr12 108218778 108218867 -35567588 + L2 LINE L2 3166 3262 -10 1542 247 70 47 chr12 108219892 108220362 -35566093 + MLT1J LTR MaLR 23 503 -8 366 323 60 35 chr12 108221020 108221252 -35565203 + L2 LINE L2 2809 3046 -226 686 289 93 45 chr12 108221252 108221605 -35564850 - MLT1I LTR MaLR -4 405 36 306 216 80 23 chr12 108221729 108221817 -35564638 - MIR SINE MIR -24 238 146 926 170 12 0 chr12 108221817 108221982 -35564473 - MIR SINE MIR -64 198 32 749 231 101 10 chr12 108221997 108222205 -35564250 - MIR SINE MIR -35 227 1 1076 288 77 31 chr12 108222564 108222642 -35563813 - L2 LINE L2 0 3313 3240 566 104 10 0 chr12 108222642 108222738 -35563717 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 1076 288 77 31 chr12 108222738 108223227 -35563228 - L2 LINE L2 -73 3240 2721 186 258 72 23 chr12 108223533 108223657 -35562798 - MIR SINE MIR -60 148 31 1919 160 3 6 chr12 108224024 108224342 -35562113 + L1MB3 LINE L1 5477 5793 -390 246 164 60 60 chr12 108224384 108224451 -35562004 - L1MB3 LINE L1 -378 5805 5739 2743 112 5 8 chr12 108224464 108224865 -35561590 + L1MB3 LINE L1 5782 6181 -2 207 97 0 32 chr12 108226247 108226278 -35560177 + MIR SINE MIR 33 62 -200 308 328 129 0 chr12 108226855 108226971 -35559484 - MIR SINE MIR -82 180 50 236 345 101 22 chr12 108227581 108227720 -35558735 + L2 LINE L2 3110 3259 -13 183 129 0 0 chr12 108227726 108227757 -35558698 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 432 0 0 0 chr12 108227898 108227946 -35558509 + (CA)n Simple_repeat Simple_repeat 1 48 0 288 0 0 0 chr12 108228147 108228179 -35558276 + (CA)n Simple_repeat Simple_repeat 1 32 0 3748 111 32 6 chr12 108228229 108228762 -35557693 - L1PA16 LINE L1 -5 6161 5615 825 319 100 43 chr12 108229007 108229187 -35557268 - L2 LINE L2 -3 3310 3142 1508 147 60 77 chr12 108229187 108229486 -35556969 + AluJo SINE Alu 3 296 -16 825 319 100 43 chr12 108229486 108230139 -35556316 - L2 LINE L2 -171 3142 2425 413 309 36 72 chr12 108230497 108230966 -35555489 - L2 LINE L2 -181 3091 2600 714 241 27 27 chr12 108231028 108231215 -35555240 - MIR SINE MIR -43 219 33 1291 177 0 0 chr12 108232037 108232280 -35554175 - L1MA4 LINE L1 -5 6295 6053 902 291 171 21 chr12 108232442 108233128 -35553327 - L2 LINE L2 -62 3251 2446 2573 51 0 0 chr12 108233613 108233907 -35552548 + AluY SINE Alu 11 304 -7 337 261 70 35 chr12 108235199 108235314 -35551141 + MIR3 SINE MIR 65 183 -25 962 194 0 29 chr12 108235399 108235574 -35550881 - MER45A DNA AcHobo -6 172 3 474 169 16 105 chr12 108238346 108238470 -35547985 + MER81 DNA DNA 2 114 0 467 260 117 17 chr12 108238629 108238848 -35547607 - MLT1H LTR MaLR -285 264 16 200 234 0 21 chr12 108239036 108239083 -35547372 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr12 108239419 108239442 -35547013 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr12 108239461 108239484 -35546971 + (TAA)n Simple_repeat Simple_repeat 2 24 0 817 250 95 4 chr12 108239485 108239717 -35546738 - MIR SINE MIR -9 253 1 559 331 62 27 chr12 108239774 108240112 -35546343 - L2 LINE L2 -679 2635 2286 348 338 68 10 chr12 108240131 108240424 -35546031 - L2 LINE L2 -1303 2011 1702 198 103 0 0 chr12 108240435 108240464 -35545991 + (T)n Simple_repeat Simple_repeat 1 29 0 205 283 57 0 chr12 108240841 108240894 -35545561 - MIR SINE MIR -11 251 196 186 336 0 66 chr12 108241032 108241154 -35545301 - L2 LINE L2 -4 3268 3155 716 193 174 6 chr12 108241361 108241522 -35544933 + MER5A DNA MER1_type 1 188 -1 539 217 166 7 chr12 108241920 108242102 -35544353 - MIR SINE MIR -13 249 42 204 216 0 0 chr12 108242504 108242555 -35543900 + CT-rich Low_complexity Low_complexity 3 53 0 216 0 0 0 chr12 108243241 108243265 -35543190 + (T)n Simple_repeat Simple_repeat 1 24 0 338 309 116 24 chr12 108243411 108243618 -35542837 - MIR SINE MIR -34 228 3 241 319 0 0 chr12 108243618 108243687 -35542768 + CT-rich Low_complexity Low_complexity 6 74 0 218 307 23 34 chr12 108243702 108243790 -35542665 - L2 LINE L2 -8 3264 3178 1049 289 73 20 chr12 108244060 108244416 -35542039 + MLT1K LTR MaLR 201 575 -13 407 273 10 10 chr12 108244505 108244604 -35541851 + L2 LINE L2 3173 3271 -1 279 302 16 24 chr12 108245038 108245164 -35541291 + CT-rich Low_complexity Low_complexity 4 128 0 241 279 131 48 chr12 108245555 108245757 -35540698 + MIR SINE MIR 1 213 -49 408 246 54 131 chr12 108245932 108246229 -35540226 - MER102b DNA MER1_type -1 340 67 372 322 96 0 chr12 108247058 108247204 -35539251 + MIR SINE MIR 53 212 -50 213 326 66 97 chr12 108247234 108247522 -35538933 + L2 LINE L2 2977 3255 -17 387 0 0 0 chr12 108247625 108247668 -35538787 + (CA)n Simple_repeat Simple_repeat 2 44 0 236 222 0 48 chr12 108248975 108249038 -35537417 + L2 LINE L2 3254 3313 0 362 344 109 48 chr12 108250714 108251167 -35535288 + L2 LINE L2 2394 2910 -362 1135 170 78 57 chr12 108251167 108251397 -35535058 - MER8 DNA MER2_type -4 235 1 362 344 109 48 chr12 108251397 108251697 -35534758 + L2 LINE L2 2910 3190 -82 2071 183 50 21 chr12 108251716 108252235 -35534220 + MLT2A2 LTR ERVL 1 554 0 2786 22 0 9 chr12 108252264 108252580 -35533875 - AluYb8 SINE Alu -5 313 1 2238 93 38 0 chr12 108253000 108253291 -35533164 - AluSx SINE Alu -10 302 1 688 179 54 54 chr12 108253564 108253748 -35532707 + MER53 DNA DNA 6 189 0 767 279 50 65 chr12 108253751 108254210 -35532245 - Charlie8 DNA MER1_type -1892 525 74 3375 131 32 87 chr12 108255105 108255311 -35531144 + MER39B LTR ERV1 1 217 -436 1918 28 0 0 chr12 108255311 108255521 -35530934 + L1PA5 LINE L1 5943 6153 -1 3375 131 32 87 chr12 108255521 108255994 -35530461 + MER39B LTR ERV1 217 643 -10 504 226 48 103 chr12 108256479 108256625 -35529830 - MIR SINE MIR -110 152 15 505 238 215 35 chr12 108256937 108257277 -35529178 + MLT1J LTR MaLR 105 505 -6 204 313 91 71 chr12 108257375 108257474 -35528981 + L2 LINE L2 3139 3239 -33 554 317 0 44 chr12 108257708 108257857 -35528598 + MIR3 SINE MIR 28 169 -39 2293 99 0 3 chr12 108257857 108258159 -35528296 + AluSc SINE Alu 1 301 -8 554 317 0 44 chr12 108258159 108258192 -35528263 + MIR3 SINE MIR 169 202 -6 1253 165 26 88 chr12 108258239 108258511 -35527944 - MLT1B LTR MaLR -135 255 1 435 260 136 26 chr12 108258745 108258899 -35527556 + L2 LINE L2 3100 3270 -2 583 319 46 17 chr12 108259062 108259303 -35527152 - MIR SINE MIR -12 250 3 219 167 0 0 chr12 108259696 108259738 -35526717 + T-rich Low_complexity Low_complexity 1 42 0 2178 110 0 19 chr12 108260595 108260903 -35525552 - AluY SINE Alu -9 302 1 263 222 14 14 chr12 108261274 108261346 -35525109 - LTR67 LTR ERVL -24 533 462 25 51 0 0 chr12 108262481 108262520 -35523935 + AT_rich Low_complexity Low_complexity 1 39 0 452 275 8 17 chr12 108262574 108262694 -35523761 - MIR SINE MIR -27 235 117 395 263 66 33 chr12 108263301 108263349 -35523106 - MIR SINE MIR -8 254 209 318 26 0 0 chr12 108263349 108263388 -35523067 + (TA)n Simple_repeat Simple_repeat 2 40 0 395 263 66 33 chr12 108263388 108263491 -35522964 - MIR SINE MIR -53 209 98 721 130 0 98 chr12 108263493 108263616 -35522839 + MSTB2 LTR MaLR 6 131 -316 764 181 82 11 chr12 108263900 108264082 -35522373 + MSTB2 LTR MaLR 263 457 0 324 306 0 60 chr12 108265191 108265325 -35521130 + MIR SINE MIR 66 191 -71 284 346 20 49 chr12 108265443 108265635 -35520820 + MIR SINE MIR 10 192 -63 21 36 0 0 chr12 108265932 108265960 -35520495 + AT_rich Low_complexity Low_complexity 1 28 0 268 309 52 126 chr12 108266029 108266417 -35520038 - L2 LINE L2 0 3272 2914 1588 170 21 24 chr12 108266700 108266989 -35519466 + AluJo SINE Alu 1 288 -24 2812 91 6 0 chr12 108267286 108267638 -35518817 + THE1A LTR MaLR 2 355 0 606 339 141 21 chr12 108268720 108269245 -35517210 + L2 LINE L2 1931 2518 -796 348 111 0 0 chr12 108269408 108269462 -35516993 + (TG)n Simple_repeat Simple_repeat 1 54 0 1869 149 30 0 chr12 108269962 108270257 -35516198 + AluSq SINE Alu 1 304 -9 222 208 0 0 chr12 108270257 108270305 -35516150 + (TA)n Simple_repeat Simple_repeat 1 48 0 283 134 27 205 chr12 108270437 108270549 -35515906 + MER5C DNA MER1_type 1 92 -232 411 186 14 0 chr12 108270596 108270666 -35515789 - MER5C DNA MER1_type -253 71 1 316 252 47 0 chr12 108270758 108270865 -35515590 + A-rich Low_complexity Low_complexity 3 114 0 284 299 79 57 chr12 108270957 108271068 -35515387 + HAL1b LINE L1 60 167 -1181 4937 34 2 9 chr12 108271068 108271632 -35514823 + L1PA5 LINE L1 5593 6152 -2 284 299 79 57 chr12 108271632 108271650 -35514805 + HAL1b LINE L1 167 183 -1165 2086 96 6 19 chr12 108271650 108271964 -35514491 + AluSp SINE Alu 1 310 -3 284 299 79 57 chr12 108271964 108272288 -35514167 + HAL1b LINE L1 183 524 -824 613 161 0 0 chr12 108272302 108272389 -35514066 + AluS SINE Alu 5 91 -222 197 268 0 0 chr12 108272461 108272502 -35513953 - L2 LINE L2 -52 3220 3180 310 305 63 47 chr12 108272506 108272696 -35513759 + HAL1b LINE L1 569 761 -587 6436 102 6 3 chr12 108273132 108274230 -35512225 - L1PA13 LINE L1 -19 6144 5037 7503 160 38 10 chr12 108274231 108275596 -35510859 + L1PA13 LINE L1 3645 5047 -1099 1085 70 0 7 chr12 108276693 108276836 -35509619 + L1PA13 LINE L1 6022 6163 0 1821 163 7 17 chr12 108278233 108278533 -35507922 + AluSx SINE Alu 2 298 -14 238 121 17 17 chr12 108279093 108279105 -35507350 + A-rich Low_complexity Low_complexity 1 12 -46 2265 95 0 3 chr12 108279105 108279399 -35507056 + AluSp SINE Alu 1 293 -20 238 121 17 17 chr12 108279399 108279444 -35507011 + A-rich Low_complexity Low_complexity 11 58 0 24 0 0 0 chr12 108279883 108279907 -35506548 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 29 chr12 108280002 108280022 -35506433 + AT_rich Low_complexity Low_complexity 1 21 -12 2287 112 0 7 chr12 108280022 108280326 -35506129 + AluSg SINE Alu 1 302 -8 23 0 0 29 chr12 108280326 108280339 -35506116 + AT_rich Low_complexity Low_complexity 21 33 0 281 26 26 0 chr12 108280339 108280377 -35506078 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 229 0 0 chr12 108280509 108280570 -35505885 + (TATG)n Simple_repeat Simple_repeat 4 64 0 241 279 0 39 chr12 108280700 108280829 -35505626 + L1MEd LINE L1 1054 1177 -4942 504 314 16 8 chr12 108280918 108281173 -35505282 + HAL1 LINE L1 1437 1693 -814 434 282 15 15 chr12 108281888 108282083 -35504372 + L1 LINE L1 3478 3672 -2474 489 322 23 42 chr12 108282780 108282994 -35503461 + MIR SINE MIR 47 256 -6 1118 189 102 84 chr12 108284188 108284862 -35501593 - LTR1B LTR ERV1 -81 745 2 13454 182 36 48 chr12 108284863 108285979 -35500476 - HUERS-P2 LTR ERV1 0 3088 1960 1881 122 23 4 chr12 108285979 108286282 -35500173 + AluSx SINE Alu 17 324 0 13454 182 36 48 chr12 108286282 108288277 -35498178 - HUERS-P2 LTR ERV1 -1128 1960 193 1433 234 104 69 chr12 108288479 108289236 -35497219 - LTR1B LTR ERV1 -42 784 1 283 242 198 0 chr12 108289497 108289599 -35496856 - MIR SINE MIR -56 152 37 526 318 102 26 chr12 108289678 108290021 -35496434 + L1MD1 LINE L1 5571 5939 -303 229 303 61 0 chr12 108290347 108290413 -35496042 + MIR SINE MIR 3 72 -190 466 246 8 0 chr12 108290427 108290549 -35495906 + MER103 DNA DNA 42 164 -2 210 353 0 15 chr12 108291195 108291263 -35495192 + MIR SINE MIR 27 93 -169 249 171 57 23 chr12 108291331 108291419 -35495036 + (TTATA)n Simple_repeat Simple_repeat 3 93 0 263 216 18 90 chr12 108291419 108291530 -35494925 + HsTC2 DNA Tc2 1 103 -1795 275 311 40 54 chr12 108291783 108291931 -35494524 + MIR SINE MIR 67 212 -50 300 344 83 66 chr12 108294882 108295338 -35491117 + L2 LINE L2 2809 3272 0 220 255 0 0 chr12 108295486 108295533 -35490922 - MIR SINE MIR -76 186 140 206 274 32 63 chr12 108295602 108295697 -35490758 - MIR SINE MIR -125 137 46 1717 102 16 4 chr12 108296320 108296564 -35489891 + AluSg SINE Alu 58 304 -6 235 329 26 13 chr12 108296564 108296640 -35489815 - L2 LINE L2 -28 3244 3168 20307 104 4 1 chr12 108296935 108300071 -35486384 - L1PA7 LINE L1 -1031 5115 1970 6834 63 16 0 chr12 108300073 108301104 -35485351 + L1PA7 LINE L1 5107 6153 -1 545 233 31 12 chr12 108302149 108302312 -35484143 - L1ME4a LINE L1 -1 6120 5955 314 228 26 26 chr12 108302414 108302528 -35483927 - L1ME4a LINE L1 -431 5690 5577 330 408 6 11 chr12 108303024 108303203 -35483252 - L2 LINE L2 -2 3270 3093 665 270 142 22 chr12 108303205 108303431 -35483024 + MIR SINE MIR 7 259 -3 255 271 24 159 chr12 108303482 108303733 -35482722 - L2 LINE L2 -191 3081 2865 2911 232 54 49 chr12 108303814 108305858 -35480597 + L1M2 LINE L1 1527 3510 -2705 213 433 31 0 chr12 108305877 108306004 -35480451 + L2 LINE L2 3138 3268 -4 37 0 0 0 chr12 108306446 108306483 -35479972 + AT_rich Low_complexity Low_complexity 1 37 0 724 207 0 7 chr12 108306483 108306618 -35479837 - AluJo SINE Alu -178 134 1 819 224 0 0 chr12 108306736 108306892 -35479563 - AluJb SINE Alu -1 311 156 526 225 0 62 chr12 108307207 108307264 -35479191 + MER58A DNA MER1_type 7 66 -275 2448 74 14 0 chr12 108307264 108307561 -35478894 - AluSq SINE Alu -12 301 1 526 225 0 62 chr12 108307561 108307632 -35478823 + MER58A DNA MER1_type 66 127 -97 192 40 0 0 chr12 108307988 108308013 -35478442 + (TTA)n Simple_repeat Simple_repeat 2 26 0 323 248 221 6 chr12 108308726 108308893 -35477562 + MIR SINE MIR 36 245 -17 892 252 37 5 chr12 108311334 108311548 -35474907 + MER58A DNA MER1_type 2 222 -2 387 329 52 24 chr12 108311569 108311782 -35474673 + L1MC1 LINE L1 4672 4890 -1256 288 327 33 7 chr12 108311980 108312130 -35474325 - HAL1 LINE L1 -825 1682 1529 298 268 92 76 chr12 108312290 108312540 -35473915 - L1MEd LINE L1 -4915 1204 951 5789 161 11 14 chr12 108312573 108313720 -35472735 + L1MC1 LINE L1 5186 6332 -1 249 256 23 12 chr12 108314462 108314548 -35471907 - MLT1J LTR MaLR -330 181 95 21 0 0 0 chr12 108315108 108315129 -35471326 + AT_rich Low_complexity Low_complexity 1 21 0 718 304 26 17 chr12 108315566 108315796 -35470659 + MIR SINE MIR 12 243 -19 797 237 89 46 chr12 108316159 108316509 -35469946 - MLT1A1 LTR MaLR 0 365 1 226 394 11 11 chr12 108316934 108317028 -35469427 - MER5A DNA MER1_type -11 178 85 255 146 0 0 chr12 108317079 108317127 -35469328 - LTR8A LTR ERV1 -679 48 1 356 104 75 0 chr12 108317171 108317238 -35469217 - L1MA5 LINE L1 -6 6294 6223 253 218 0 0 chr12 108317636 108317691 -35468764 - MER58 DNA MER1_type -8 2412 2358 2836 137 16 8 chr12 108317734 108318232 -35468223 + L1MA4 LINE L1 5794 6295 -5 3171 147 77 54 chr12 108318271 108318973 -35467482 + LTR8A LTR ERV1 1 718 -9 454 225 80 7 chr12 108319002 108319153 -35467302 - MER58 DNA MER1_type -2206 214 53 4088 162 17 4 chr12 108319154 108319856 -35466599 + MER50 LTR ERV1 1 711 -23 183 330 93 42 chr12 108319905 108320120 -35466335 + L2 LINE L2 1498 1723 -1591 1907 194 23 3 chr12 108320121 108320507 -35465948 + MLT2C2 LTR ERVL 1 394 -70 234 182 18 0 chr12 108320564 108320619 -35465836 + MLT2C2 LTR ERVL 465 520 0 522 309 37 63 chr12 108320711 108320980 -35465475 + Charlie8 DNA MER1_type 15 276 -2141 680 325 56 21 chr12 108321066 108321337 -35465118 + L2 LINE L2 2781 3060 -253 194 223 21 106 chr12 108321421 108321515 -35464940 + L2 LINE L2 3219 3304 -9 313 298 32 0 chr12 108321946 108322070 -35464385 - LTR16A LTR ERVL -9 441 314 1373 339 52 21 chr12 108322117 108322958 -35463497 - HERVL LTR ERVL -1232 4422 3556 314 329 166 21 chr12 108323296 108323579 -35462876 - L2 LINE L2 -585 2729 2406 1515 164 84 77 chr12 108323683 108324074 -35462381 + MSTD LTR MaLR 3 396 0 2165 107 0 4 chr12 108324152 108324432 -35462023 + AluSx SINE Alu 2 280 -32 207 0 0 0 chr12 108324432 108324455 -35462000 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 333 271 10 21 chr12 108324496 108324592 -35461863 + L2 LINE L2 3218 3312 -1 667 256 87 15 chr12 108324937 108325114 -35461341 - MIR3 SINE MIR -3 205 15 744 281 73 65 chr12 108326223 108326593 -35459862 - L2 LINE L2 -21 3292 2920 410 316 41 69 chr12 108326711 108327028 -35459427 - L2 LINE L2 -414 2900 2593 207 325 38 25 chr12 108327273 108327353 -35459102 + L2 LINE L2 3189 3269 -3 24 0 0 0 chr12 108327463 108327487 -35458968 + AT_rich Low_complexity Low_complexity 1 24 0 419 312 75 16 chr12 108327829 108328015 -35458440 + MIR3 SINE MIR 10 206 -2 528 285 23 11 chr12 108328431 108328691 -35457764 + L1ME3A LINE L1 4266 4528 -1618 * 701 285 28 16 chr12 108328671 108328990 -35457465 + L1ME3A LINE L1 4769 5091 -1055 2377 126 42 0 chr12 108328992 108329373 -35457082 - L1PA16 LINE L1 -1 6165 5769 298 270 0 0 chr12 108329288 108329388 -35457067 - L1ME LINE L1 -309 5853 5754 1837 77 123 11 chr12 108329470 108329731 -35456724 - AluYa8 SINE Alu 0 310 21 1635 130 20 4 chr12 108329731 108329984 -35456471 - L1P4 LINE L1 -381 5785 5529 1128 261 80 52 chr12 108329995 108330766 -35455689 + L1ME3A LINE L1 5087 5906 -264 6171 168 13 21 chr12 108330766 108331931 -35454524 + L1PA15 LINE L1 4127 5289 -876 2156 142 0 0 chr12 108331931 108332241 -35454214 + AluSx SINE Alu 1 310 -2 6171 168 13 21 chr12 108332241 108332913 -35453542 + L1PA15 LINE L1 5289 5965 -200 617 259 6 19 chr12 108332905 108333067 -35453388 + L1ME3A LINE L1 6005 6164 -6 * 640 213 31 12 chr12 108333180 108333344 -35453111 + MER58C DNA MER1_type 36 200 -15 410 273 77 42 chr12 108333361 108333504 -35452951 - MIR3 SINE MIR -51 157 10 269 346 124 34 chr12 108333610 108333740 -35452715 + L2 LINE L2 2375 2492 -822 2264 153 82 8 chr12 108333740 108334140 -35452315 + MSTB1 LTR MaLR 3 432 0 269 346 124 34 chr12 108334140 108334364 -35452091 + L2 LINE L2 2492 2761 -553 927 218 5 0 chr12 108334373 108334561 -35451894 - MER3 DNA MER1_type -19 190 2 326 349 91 17 chr12 108334620 108334852 -35451603 + L2 LINE L2 2812 3060 -212 557 296 7 0 chr12 108334961 108335103 -35451352 - MER58B DNA MER1_type -1 340 198 618 237 92 0 chr12 108335346 108335519 -35450936 + Charlie4 DNA MER1_type 1741 1929 -32 376 297 87 8 chr12 108336337 108336487 -35449968 + MIR SINE MIR 8 168 -64 2141 143 30 124 chr12 108336941 108337401 -35449054 + MER47B DNA MER2_type 2 418 0 267 384 104 20 chr12 108337861 108338202 -35448253 - L2 LINE L2 -213 3059 2686 802 149 0 15 chr12 108338209 108338343 -35448112 + AluSg/x SINE Alu 170 301 -9 207 139 0 0 chr12 108338745 108338781 -35447674 + (A)n Simple_repeat Simple_repeat 1 36 0 743 282 40 28 chr12 108339451 108339699 -35446756 + MIR SINE MIR 11 261 -1 2058 123 158 13 chr12 108340111 108340288 -35446167 - MSTA LTR MaLR 0 428 278 486 33 0 0 chr12 108340288 108340348 -35446107 + (GA)n Simple_repeat Simple_repeat 1 60 0 2058 123 158 13 chr12 108340348 108340544 -35445911 - MSTA LTR MaLR -150 278 1 238 261 25 127 chr12 108340710 108340867 -35445588 - MIR SINE MIR -120 142 2 337 269 31 88 chr12 108341068 108341295 -35445160 + L2 LINE L2 3100 3313 0 2200 115 7 3 chr12 108341394 108341698 -35444757 + AluSq SINE Alu 1 305 -8 2651 262 91 114 chr12 108341864 108343872 -35442583 - L2 LINE L2 -377 2937 978 614 335 173 15 chr12 108343924 108344461 -35441994 - L2 LINE L2 -2619 695 74 1738 232 22 73 chr12 108344819 108345367 -35441088 + MLT2B1 LTR ERVL 1 520 0 17097 184 54 34 chr12 108345369 108348364 -35438091 + ERVL-B1 LTR ERVL 3 3074 -2690 1956 108 141 15 chr12 108348364 108348697 -35437758 + THE1C LTR MaLR 1 375 0 17097 184 54 34 chr12 108348697 108349099 -35437356 + ERVL-B1 LTR ERVL 3074 3467 -2297 10721 89 2 1 chr12 108349101 108350485 -35435970 - THE1B-int LTR MaLR -195 1385 1 2331 128 73 14 chr12 108350485 108350829 -35435626 - THE1B LTR MaLR 0 364 1 8402 168 17 34 chr12 108350830 108352349 -35434106 + ERVL-B1 LTR ERVL 4261 5753 -11 1315 223 10 85 chr12 108352353 108352752 -35433703 + MLT2B1 LTR ERVL 1 369 -151 3852 121 0 4 chr12 108352832 108353345 -35433110 - MER9 LTR ERVK 0 511 1 46597 64 18 14 chr12 108353345 108358415 -35428040 - HERVK9 LTR ERVK 0 5916 760 198 233 0 83 chr12 108358415 108358475 -35427980 - MER5B DNA MER1_type -69 109 55 46597 64 18 14 chr12 108358475 108359213 -35427242 - HERVK9 LTR ERVK -5156 760 26 251 163 78 66 chr12 108359213 108359237 -35427218 + MLT2D LTR ERVL 373 357 -57 3872 117 0 4 chr12 108359237 108359750 -35426705 - MER9 LTR ERVK 0 511 1 251 163 78 66 chr12 108359750 108359810 -35426645 + MLT2D LTR ERVL 356 414 0 607 215 290 11 chr12 108359864 108360050 -35426405 - MIR SINE MIR 0 262 25 25 0 0 0 chr12 108362123 108362148 -35424307 + AT_rich Low_complexity Low_complexity 1 25 0 362 88 59 0 chr12 108363425 108363493 -35422962 - MER69 DNA AcHobo -126 2400 2329 542 221 107 0 chr12 108363534 108363656 -35422799 - AluJb SINE Alu -2 310 176 386 178 96 59 chr12 108363656 108363717 -35422738 - MER69 DNA AcHobo -237 2289 2232 5563 83 6 3 chr12 108363717 108364406 -35422049 - LTR8 LTR ERV1 0 691 1 386 178 96 59 chr12 108364406 108364479 -35421976 - MER69 DNA AcHobo -294 2232 2150 1065 242 115 31 chr12 108364494 108364850 -35421605 - MER69 DNA AcHobo -1754 772 387 184 224 0 86 chr12 108364865 108364923 -35421532 - L2 LINE L2 -96 3217 3165 3590 145 36 43 chr12 108365463 108366069 -35420386 - LTR26 LTR ERV1 0 603 2 253 287 30 40 chr12 108366246 108366347 -35420108 - MER5A DNA MER1_type -30 159 60 511 250 33 13 chr12 108366559 108366711 -35419744 + L1MC4a LINE L1 5673 5827 -1981 3388 195 60 21 chr12 108366872 108367453 -35419002 + MER54B LTR ERVL 1 611 -182 1915 149 155 13 chr12 108367453 108367828 -35418627 + MSTA LTR MaLR 1 428 0 3388 195 60 21 chr12 108367828 108367901 -35418554 + MER54B LTR ERVL 611 680 -113 313 228 250 7 chr12 108368025 108368161 -35418294 + MLT1H LTR MaLR 123 291 -258 424 277 37 95 chr12 108368230 108368450 -35418005 - MLT2F LTR ERVL -45 618 164 1137 278 59 12 chr12 108368451 108368771 -35417684 - MLT2F LTR ERVL -326 337 3 242 283 100 17 chr12 108368807 108368927 -35417528 + MLT1H LTR MaLR 382 511 -38 653 346 49 47 chr12 108369303 108369832 -35416623 + L2 LINE L2 2423 2952 -362 845 189 26 0 chr12 108369834 108369987 -35416468 + MSTA LTR MaLR 1 157 -271 656 167 8 48 chr12 108369987 108370113 -35416342 + MSTA LTR MaLR 308 428 0 513 248 39 26 chr12 108370113 108370266 -35416189 + L2 LINE L2 3159 3313 0 369 286 16 16 chr12 108370324 108370450 -35416005 + L2 LINE L2 2940 3065 -248 1036 166 6 0 chr12 108371123 108371298 -35415157 + MLT2B1 LTR ERVL 1 176 -344 258 326 0 0 chr12 108371298 108371384 -35415071 - L1MC/D LINE L1 -1998 5810 5725 675 285 158 25 chr12 108372295 108372688 -35413767 + L2 LINE L2 2869 3313 0 508 287 17 29 chr12 108372716 108372890 -35413565 - MER5B DNA MER1_type 0 178 7 221 306 12 0 chr12 108372926 108373011 -35413444 - L2 LINE L2 -691 2623 2538 185 356 59 0 chr12 108373027 108373128 -35413327 - MIR SINE MIR -84 124 18 662 152 37 16 chr12 108373430 108373675 -35412780 + CT-rich Low_complexity Low_complexity 1 250 0 239 225 11 112 chr12 108374762 108374851 -35411604 - L2 LINE L2 0 3313 3234 207 114 0 0 chr12 108375202 108375237 -35411218 + (ATG)n Simple_repeat Simple_repeat 2 36 0 611 270 25 69 chr12 108375540 108375778 -35410677 - MIR SINE MIR 0 262 36 2174 111 7 0 chr12 108375778 108376076 -35410379 - AluSg SINE Alu -10 300 1 611 270 25 69 chr12 108376076 108376111 -35410344 - MIR SINE MIR -226 36 1 183 180 80 20 chr12 108376430 108376480 -35409975 + L2 LINE L2 3261 3313 0 364 309 7 59 chr12 108376562 108376698 -35409757 - L2 LINE L2 0 3272 3144 255 258 65 0 chr12 108378077 108378139 -35408316 - L2 LINE L2 0 3313 3248 301 299 97 35 chr12 108378435 108378579 -35407876 - MIR3 SINE MIR -18 190 38 1062 179 5 41 chr12 108379629 108379747 -35406708 - MER5A DNA MER1_type -1 188 67 2363 110 0 0 chr12 108379747 108380055 -35406400 - AluSg SINE Alu -2 308 1 348 112 0 4 chr12 108380009 108380072 -35406383 - Alu SINE Alu -256 46 1 1062 179 5 41 chr12 108380072 108380131 -35406324 - MER5A DNA MER1_type -139 50 1 195 326 134 23 chr12 108380619 108380791 -35405664 + MIR SINE MIR 22 212 -50 255 61 0 0 chr12 108380835 108380868 -35405587 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 234 262 211 21 chr12 108381212 108381308 -35405147 + MIR SINE MIR 37 149 -65 471 101 0 0 chr12 108382618 108382697 -35403758 + (GA)n Simple_repeat Simple_repeat 2 80 0 477 0 0 0 chr12 108382704 108382757 -35403698 + (CA)n Simple_repeat Simple_repeat 2 54 0 204 218 0 55 chr12 108383548 108383603 -35402852 + CT-rich Low_complexity Low_complexity 2 53 0 1823 107 16 4 chr12 108384103 108384345 -35402110 - AluSx SINE Alu -22 290 46 187 204 23 0 chr12 108384787 108384831 -35401624 + L2 LINE L2 3262 3306 -7 46 0 0 0 chr12 108384884 108384930 -35401525 + AT_rich Low_complexity Low_complexity 1 46 0 18979 155 33 15 chr12 108385035 108388587 -35397868 + L1MA2 LINE L1 22 3508 -4215 2357 99 3 0 chr12 108388587 108388891 -35397564 + AluSc SINE Alu 1 305 -4 18979 155 33 15 chr12 108388891 108392907 -35393548 + L1MA2 LINE L1 3508 7723 0 28 0 0 0 chr12 108393336 108393364 -35393091 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr12 108394019 108394047 -35392408 + (T)n Simple_repeat Simple_repeat 1 28 0 366 172 0 0 chr12 108394366 108394424 -35392031 - L2 LINE L2 -3 3269 3212 461 371 95 14 chr12 108394595 108395187 -35391268 + L2 LINE L2 2676 3313 0 22 56 0 0 chr12 108395219 108395255 -35391200 + AT_rich Low_complexity Low_complexity 1 36 0 274 369 74 8 chr12 108395406 108395528 -35390927 - MIR SINE MIR -63 145 16 185 86 57 0 chr12 108395722 108395757 -35390698 + CT-rich Low_complexity Low_complexity 2 38 0 861 91 14 14 chr12 108395760 108395903 -35390552 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 504 269 41 15 chr12 108395945 108396357 -35390098 - HAL1 LINE L1 -1131 1376 821 317 155 64 15 chr12 108396361 108396475 -35389980 - MER53 DNA DNA 0 189 1 1824 260 143 11 chr12 108396476 108397203 -35389252 - HAL1 LINE L1 -1682 825 3 241 351 61 15 chr12 108397207 108397338 -35389117 + MIR3 SINE MIR 70 206 -2 210 212 91 136 chr12 108397455 108397587 -35388868 + MIR SINE MIR 87 212 -50 2560 47 0 0 chr12 108397733 108398032 -35388423 - AluY SINE Alu -12 299 1 740 294 26 18 chr12 108398165 108398393 -35388062 - MIR SINE MIR -31 231 2 196 312 11 132 chr12 108398642 108398657 -35387798 + L2 LINE L2 3004 3019 -253 1755 192 3 7 chr12 108398657 108398954 -35387501 - AluJb SINE Alu -14 298 3 196 312 11 132 chr12 108398954 108399037 -35387418 + L2 LINE L2 3019 3071 -201 336 208 0 0 chr12 108399037 108399114 -35387341 + MER116 DNA Mariner 1 77 -3 196 312 11 132 chr12 108399114 108399203 -35387252 + L2 LINE L2 3071 3169 -103 652 280 30 51 chr12 108399228 108399370 -35387085 - MIR SINE MIR -19 243 106 1927 207 43 82 chr12 108399370 108399946 -35386509 - MLT2B3 LTR ERVL 0 554 1 652 280 30 51 chr12 108399946 108400039 -35386416 - MIR SINE MIR -156 106 13 350 197 15 0 chr12 108400075 108400141 -35386314 + L2 LINE L2 3186 3252 -20 227 253 115 35 chr12 108400170 108400257 -35386198 - L2 LINE L2 -17 3296 3203 232 195 0 0 chr12 108400442 108400483 -35385972 - L2 LINE L2 -346 2968 2928 604 301 17 54 chr12 108400505 108400756 -35385699 + MIR SINE MIR 2 242 -20 2655 111 57 2 chr12 108400854 108401260 -35385195 - MSTA LTR MaLR 0 428 1 501 271 100 29 chr12 108401308 108401518 -35384937 - MIR SINE MIR -36 226 2 1220 175 109 12 chr12 108401551 108401845 -35384610 + AluJo SINE Alu 1 319 0 196 250 0 0 chr12 108402292 108402332 -35384123 - MIR3 SINE MIR -15 193 154 572 228 21 21 chr12 108402370 108402515 -35383940 + MIR SINE MIR 84 228 -34 199 280 173 0 chr12 108402523 108402598 -35383857 - MIR SINE MIR -99 109 22 514 177 9 0 chr12 108402976 108403089 -35383366 + L1MA4 LINE L1 6183 6296 -4 440 271 74 8 chr12 108404228 108404350 -35382105 + L2 LINE L2 3184 3313 0 472 242 46 36 chr12 108404357 108404632 -35381823 - MLT1I LTR MaLR 0 409 102 1418 185 66 44 chr12 108404838 108405201 -35381254 - MLT1A2 LTR MaLR 0 374 4 864 178 40 0 chr12 108405205 108405379 -35381076 + MER106A DNA MER1_type 1 181 -55 571 58 0 0 chr12 108405382 108405451 -35381004 + AluSg/x SINE Alu 213 281 -31 207 0 0 0 chr12 108405454 108405477 -35380978 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 646 289 0 0 chr12 108406033 108406185 -35380270 + MIR SINE MIR 44 195 -67 5510 158 33 6 chr12 108406202 108407211 -35379244 - L1MA8 LINE L1 -3 6288 5221 1819 152 93 7 chr12 108407211 108407521 -35378934 - MER1B DNA MER1_type 0 337 1 5510 158 33 6 chr12 108407521 108408180 -35378275 - L1MA8 LINE L1 -1070 5221 4581 6892 190 40 6 chr12 108408183 108409778 -35376677 - L1MA8 LINE L1 -2091 4055 2407 1714 208 44 3 chr12 108409790 108410155 -35376300 + MSTB LTR MaLR 47 426 0 251 133 0 0 chr12 108410156 108410201 -35376254 - L1MA8 LINE L1 -3732 2414 2370 194 273 18 18 chr12 108410229 108410284 -35376171 + MIR SINE MIR 205 259 -3 330 132 0 0 chr12 108410972 108411025 -35375430 + (CA)n Simple_repeat Simple_repeat 1 53 0 575 312 135 43 chr12 108411474 108411964 -35374491 - LTR67 LTR ERVL -10 547 13 279 338 114 45 chr12 108412879 108413080 -35373375 + MIR SINE MIR 30 244 -18 650 256 152 17 chr12 108413241 108413471 -35372984 - MIR SINE MIR 0 262 2 372 94 0 0 chr12 108414302 108414355 -35372100 + (TG)n Simple_repeat Simple_repeat 1 53 0 213 293 0 71 chr12 108414553 108414652 -35371803 - L2 LINE L2 0 3313 3222 180 196 109 22 chr12 108416276 108416322 -35370133 - L2 LINE L2 -2911 403 354 2229 145 31 75 chr12 108416404 108416927 -35369528 + MLT1D LTR MaLR 1 500 -5 3129 278 54 9 chr12 108417478 108418475 -35367980 + ERVL LTR ERVL 3770 4811 -953 678 242 65 53 chr12 108418479 108418675 -35367780 - MLT1C LTR MaLR 0 467 275 1904 158 3 6 chr12 108418675 108418986 -35367469 - AluJb SINE Alu -2 310 1 678 242 65 53 chr12 108418986 108419179 -35367276 - MLT1C LTR MaLR -192 275 27 243 244 87 132 chr12 108419200 108419386 -35367069 - MER5B DNA MER1_type -12 166 3 702 260 58 31 chr12 108419412 108419620 -35366835 + MIR SINE MIR 48 258 -4 291 114 0 0 chr12 108420085 108420129 -35366326 + (TG)n Simple_repeat Simple_repeat 1 44 0 684 229 49 0 chr12 108420147 108420291 -35366164 + MER58A DNA MER1_type 1 151 0 230 300 36 27 chr12 108420316 108420426 -35366029 - L2 LINE L2 -36 3277 3167 365 268 124 0 chr12 108421563 108421660 -35364795 + MIR SINE MIR 45 153 -55 209 333 140 18 chr12 108421749 108421863 -35364592 + MIR SINE MIR 69 196 -66 247 284 12 0 chr12 108421977 108422058 -35364397 + L1ME4a LINE L1 5582 5663 -458 696 258 93 70 chr12 108423206 108423304 -35363151 - MLT1J LTR MaLR -3 508 414 2071 138 33 25 chr12 108423304 108423665 -35362790 + THE1B LTR MaLR 1 364 0 696 258 93 70 chr12 108423665 108424063 -35362392 - MLT1J LTR MaLR -97 414 1 504 293 69 86 chr12 108424076 108424288 -35362167 + HAL1b LINE L1 399 604 -744 2146 76 7 50 chr12 108424288 108424633 -35361822 + AluY SINE Alu 1 311 0 504 293 69 86 chr12 108424633 108424768 -35361687 + HAL1b LINE L1 604 740 -608 329 285 120 74 chr12 108424848 108425032 -35361423 + L1M4 LINE L1 3419 3593 -2553 2117 102 35 0 chr12 108425032 108425315 -35361140 + AluSp SINE Alu 1 293 -20 329 285 120 74 chr12 108425315 108425590 -35360865 + L1M4 LINE L1 3593 3899 -2247 407 251 136 68 chr12 108425640 108425867 -35360588 + L1M4 LINE L1 3953 4206 -1940 2227 95 14 3 chr12 108425867 108426162 -35360293 + AluSc SINE Alu 1 298 -11 407 251 136 68 chr12 108426162 108426229 -35360226 + L1M4 LINE L1 4206 4267 -1879 278 183 58 17 chr12 108426317 108426437 -35360018 + (TA)n Simple_repeat Simple_repeat 1 125 0 1788 172 7 7 chr12 108426608 108426899 -35359556 + AluJb SINE Alu 1 291 -21 406 310 9 0 chr12 108427196 108427309 -35359146 + L2 LINE L2 3195 3308 -5 269 48 48 0 chr12 108427729 108427771 -35358684 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 321 26 0 0 chr12 108428626 108428664 -35357791 + (TTCTC)n Simple_repeat Simple_repeat 1 38 0 1962 168 3 0 chr12 108428664 108428974 -35357481 - AluJb SINE Alu -1 311 1 523 236 67 24 chr12 108429066 108429231 -35357224 + L2 LINE L2 3142 3313 0 329 271 0 9 chr12 108430298 108430405 -35356050 + L1ME4a LINE L1 5779 5884 -237 181 83 56 0 chr12 108430421 108430457 -35355998 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 332 303 41 25 chr12 108433008 108433130 -35353325 - L3 LINE CR1 -1 1576 1453 237 197 0 0 chr12 108433481 108433547 -35352908 + (TG)n Simple_repeat Simple_repeat 2 67 0 2724 79 3 0 chr12 108434231 108434573 -35351882 + THE1A LTR MaLR 13 355 0 7916 36 5 56 chr12 108434664 108435967 -35350488 - L1PA5 LINE L1 -1 6153 4877 209 260 40 0 chr12 108436485 108436535 -35349920 - MIR SINE MIR -155 107 56 293 286 62 27 chr12 108436670 108436782 -35349673 - L2 LINE L2 -1025 2289 2174 389 304 20 6 chr12 108436886 108437045 -35349410 - MIR3 SINE MIR -69 139 6 239 277 198 0 chr12 108438656 108438757 -35347698 + L2 LINE L2 3193 3313 0 4116 117 12 55 chr12 108438929 108439034 -35347421 - L1PA15 LINE L1 -17 6148 6040 2386 108 71 8 chr12 108439034 108439387 -35347068 - THE1C LTR MaLR 0 375 1 4116 117 12 55 chr12 108439387 108439601 -35346854 - L1PA15 LINE L1 -125 6040 5818 495 0 0 0 chr12 108439601 108439656 -35346799 + (TTC)n Simple_repeat Simple_repeat 2 56 0 4116 117 12 55 chr12 108439656 108439681 -35346774 - L1PA15 LINE L1 -347 5818 5793 2195 105 0 3 chr12 108439681 108439966 -35346489 - AluSg SINE Alu -26 284 1 4116 117 12 55 chr12 108439966 108440275 -35346180 - L1PA15 LINE L1 -372 5793 5521 2367 138 31 6 chr12 108440305 108440660 -35345795 - THE1B LTR MaLR 0 364 1 294 265 15 0 chr12 108440788 108440856 -35345599 - MIR SINE MIR -127 135 67 559 248 172 6 chr12 108441016 108441173 -35345282 + MER5A DNA MER1_type 7 189 0 510 17 0 0 chr12 108441185 108441244 -35345211 + (CA)n Simple_repeat Simple_repeat 2 60 0 420 270 120 0 chr12 108441501 108441601 -35344854 - MER81 DNA DNA -2 112 1 195 316 165 32 chr12 108441652 108441810 -35344645 + MIR SINE MIR 29 207 -55 2121 128 6 6 chr12 108442095 108442407 -35344048 + AluJo SINE Alu 1 312 0 426 272 6 51 chr12 108442410 108442568 -35343887 + MIR SINE MIR 46 196 -66 1794 134 25 25 chr12 108442784 108443090 -35343365 + AluSx SINE Alu 9 314 0 209 238 48 0 chr12 108443125 108443167 -35343288 - L2 LINE L2 -16 3256 3213 361 310 168 5 chr12 108443168 108443371 -35343084 - MIR SINE MIR -3 259 24 651 213 161 0 chr12 108443488 108443643 -35342812 - MER5A DNA MER1_type -1 188 9 268 313 0 0 chr12 108443948 108444015 -35342440 + MER5A DNA MER1_type 108 174 -15 29 28 0 0 chr12 108444301 108444337 -35342118 + AT_rich Low_complexity Low_complexity 1 36 0 1315 277 95 37 chr12 108444435 108445078 -35341377 + L1ME3 LINE L1 5452 6131 -31 360 43 0 0 chr12 108445139 108445185 -35341270 + (CA)n Simple_repeat Simple_repeat 1 46 0 2269 93 0 13 chr12 108446006 108446306 -35340149 + AluY SINE Alu 1 296 -15 315 257 0 14 chr12 108446454 108446524 -35339931 + Charlie8 DNA MER1_type 11 79 -2338 261 273 262 5 chr12 108446517 108446704 -35339751 + Charlie8 DNA MER1_type 92 2413 -4 * 202 372 54 8 chr12 108447539 108447668 -35338787 - L2 LINE L2 -4 3309 3175 232 265 15 45 chr12 108448994 108449126 -35337329 + CT-rich Low_complexity Low_complexity 4 131 0 181 271 0 34 chr12 108450073 108450132 -35336323 + MIR SINE MIR 59 115 -147 1815 139 83 12 chr12 108450171 108450508 -35335947 + MER46B DNA MER2_type 1 236 0 678 221 8 0 chr12 108450609 108450736 -35335719 - MER3 DNA MER1_type -81 128 1 835 268 68 0 chr12 108451467 108451702 -35334753 - MIR SINE MIR -3 259 9 942 178 53 0 chr12 108452065 108452234 -35334221 + MER58A DNA MER1_type 37 214 -10 2347 83 0 13 chr12 108452739 108453040 -35333415 + AluSx SINE Alu 1 297 -15 1508 252 99 61 chr12 108453145 108453753 -35332702 + MER21B LTR ERV1 1 631 -232 216 318 68 0 chr12 108454361 108454449 -35332006 - MIR SINE MIR -66 142 49 441 0 0 0 chr12 108455098 108455147 -35331308 + (TG)n Simple_repeat Simple_repeat 1 49 0 225 339 181 0 chr12 108455253 108455380 -35331075 - MIR SINE MIR -6 256 107 2414 96 0 3 chr12 108455845 108456157 -35330298 + AluSq SINE Alu 1 311 -2 712 254 97 5 chr12 108456417 108456602 -35329853 + AluJo SINE Alu 2 203 -109 2351 62 0 0 chr12 108456702 108456977 -35329478 + AluY SINE Alu 21 295 -16 250 382 33 20 chr12 108457027 108457179 -35329276 + L2 LINE L2 2908 3061 -211 212 184 0 0 chr12 108458085 108458123 -35328332 + A-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr12 108458878 108458902 -35327553 + AT_rich Low_complexity Low_complexity 1 24 0 231 310 11 35 chr12 108459677 108459764 -35326691 - MIR SINE MIR -64 144 60 2047 98 0 4 chr12 108461233 108461499 -35324956 + AluSq SINE Alu 1 265 -48 184 381 129 14 chr12 108462481 108462620 -35323835 + L2 LINE L2 3116 3270 -2 600 324 30 38 chr12 108462795 108463057 -35323398 - MIR SINE MIR 0 262 3 581 233 164 0 chr12 108463409 108463555 -35322900 + MER5A DNA MER1_type 20 189 0 466 255 10 0 chr12 108463717 108463819 -35322636 + MER5B DNA MER1_type 44 146 -32 206 347 103 61 chr12 108463884 108464097 -35322358 + L2 LINE L2 2976 3197 -75 280 279 208 7 chr12 108464117 108464271 -35322184 - MIR SINE MIR -6 256 72 296 132 0 19 chr12 108464286 108464339 -35322116 + L2 LINE L2 3262 3313 0 307 237 43 21 chr12 108464976 108465069 -35321386 - MIR SINE MIR -42 220 126 323 303 40 0 chr12 108465457 108465556 -35320899 - L2 LINE L2 -1 3271 3169 323 189 122 14 chr12 108465747 108465821 -35320634 - MER5B DNA MER1_type -52 126 45 197 291 10 58 chr12 108465844 108465947 -35320508 - L2 LINE L2 -317 2955 2858 700 257 23 6 chr12 108466392 108466563 -35319892 - MER5B DNA MER1_type -2 176 3 289 331 60 23 chr12 108466575 108466708 -35319747 + MER5A DNA MER1_type 4 141 -48 361 183 122 0 chr12 108466813 108466895 -35319560 - MER5A DNA MER1_type -84 105 14 282 329 63 35 chr12 108466994 108467137 -35319318 + L2 LINE L2 3126 3272 0 287 250 25 0 chr12 108467815 108467895 -35318560 + GA-rich Low_complexity Low_complexity 1 82 0 280 217 42 189 chr12 108468443 108468660 -35317795 + MER5A DNA MER1_type 1 185 -4 205 241 111 0 chr12 108468775 108468829 -35317626 + MIR SINE MIR 89 148 -60 714 244 43 29 chr12 108468852 108469061 -35317394 - MER102b DNA MER1_type -24 317 106 839 220 11 16 chr12 108469322 108469504 -35316951 - MER5A DNA MER1_type -4 185 5 19524 31 0 0 chr12 108469647 108471958 -35314497 - L1P LINE L1 -972 5174 2865 1295 169 127 46 chr12 108472783 108472931 -35313524 - AluSx SINE Alu -5 307 172 186 43 0 0 chr12 108472931 108472954 -35313501 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2109 84 7 21 chr12 108472954 108473238 -35313217 - AluSc SINE Alu -29 280 1 1295 169 127 46 chr12 108473238 108473372 -35313083 - AluSx SINE Alu -139 173 1 1938 125 27 3 chr12 108474295 108474591 -35311864 - AluSg SINE Alu -3 307 5 233 175 35 18 chr12 108474769 108474826 -35311629 - L1M LINE L1 -765 5419 5362 313 258 148 22 chr12 108474846 108475028 -35311427 - L1M4 LINE L1 -813 5333 5129 2194 111 7 3 chr12 108475723 108476020 -35310435 + AluSg1 SINE Alu 1 298 -11 2131 127 6 19 chr12 108476914 108477229 -35309226 - AluJo SINE Alu -1 311 1 212 171 0 0 chr12 108477807 108477848 -35308607 + A-rich Low_complexity Low_complexity 1 41 0 222 286 0 0 chr12 108477939 108477988 -35308467 + (CA)n Simple_repeat Simple_repeat 1 49 0 332 200 0 0 chr12 108478012 108478072 -35308383 - MER117 DNA MER1_type -132 65 6 12852 97 9 11 chr12 108479125 108480997 -35305458 - L1P LINE L1 -3341 2805 937 752 204 29 0 chr12 108482841 108482978 -35303477 + MER63 DNA MER1_type 4 770 -292 350 224 112 0 chr12 108483772 108483897 -35302558 - MIR SINE MIR -107 155 17 201 314 42 25 chr12 108485154 108485272 -35301183 - L2 LINE L2 -5 3308 3189 2745 73 19 5 chr12 108485451 108485821 -35300634 + THE1C LTR MaLR 1 375 0 8207 198 41 27 chr12 108487112 108489063 -35297392 - L1M1 LINE L1 -3899 2949 991 3972 144 55 59 chr12 108490329 108491209 -35295246 - L1MB8 LINE L1 -15 6163 5288 26 50 0 0 chr12 108491443 108491483 -35294972 + AT_rich Low_complexity Low_complexity 1 40 0 229 289 107 42 chr12 108492777 108493040 -35293415 - L2 LINE L2 -668 2646 2367 251 250 25 17 chr12 108493690 108493810 -35292645 - L1MC4 LINE L1 -1339 6703 6583 1941 127 7 10 chr12 108494159 108494458 -35291997 - AluSp SINE Alu -13 300 3 230 54 0 27 chr12 108494606 108494643 -35291812 + (TTA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr12 108494673 108494702 -35291753 + AT_rich Low_complexity Low_complexity 1 29 0 234 299 45 0 chr12 108495403 108495557 -35290898 + L1M LINE L1 5264 5424 -2384 22 35 0 0 chr12 108495858 108495887 -35290568 + AT_rich Low_complexity Low_complexity 1 29 0 382 271 132 35 chr12 108496486 108496796 -35289659 - L1MC5 LINE L1 -273 7688 7349 1654 162 78 48 chr12 108496797 108497111 -35289344 + MER1B DNA MER1_type 1 189 -2513 2144 99 17 7 chr12 108497111 108497403 -35289052 + AluSg SINE Alu 1 295 -15 1654 162 78 48 chr12 108497403 108497549 -35288906 + MER1B DNA MER1_type 189 329 0 399 128 154 13 chr12 108497576 108497654 -35288801 - MER3 DNA MER1_type -1 208 120 2198 95 34 0 chr12 108497655 108497950 -35288505 + AluSq SINE Alu 1 305 -8 220 267 17 0 chr12 108498081 108498141 -35288314 - MIR SINE MIR 0 262 202 6989 187 16 10 chr12 108498270 108500107 -35286348 - L1PA13 LINE L1 -4335 2462 769 8876 156 17 2 chr12 108504077 108505791 -35280664 - L1P4 LINE L1 -630 5533 3795 322 272 97 0 chr12 108506004 108506118 -35280337 - L3 LINE CR1 -62 1515 1391 329 320 41 7 chr12 108506439 108506586 -35279869 + HAL1 LINE L1 553 704 -1803 384 22 0 0 chr12 108506663 108506708 -35279747 + (CA)n Simple_repeat Simple_repeat 1 45 0 2054 232 97 4 chr12 108506726 108507243 -35279212 + MLT1F1 LTR MaLR 1 565 -2 216 0 0 0 chr12 108507267 108507291 -35279164 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1531 159 0 102 chr12 108507296 108507610 -35278845 - AluJb SINE Alu -30 282 1 11855 62 4 1 chr12 108507791 108509295 -35277160 - L1P LINE L1 -1083 5063 3556 488 161 115 0 chr12 108509672 108509759 -35276696 - MER46C DNA MER2_type -3 335 239 374 224 10 31 chr12 108509760 108509858 -35276597 + MER82 DNA MER2_type 1 96 -557 203 125 25 0 chr12 108509858 108509898 -35276557 + (CA)n Simple_repeat Simple_repeat 1 41 0 187 365 79 0 chr12 108509921 108510047 -35276408 - MIR SINE MIR -77 185 50 1005 242 5 0 chr12 108510136 108510330 -35276125 + MER82 DNA MER2_type 459 653 0 678 234 0 40 chr12 108510335 108510510 -35275945 - MER46C DNA MER2_type -112 226 59 1007 170 52 39 chr12 108511247 108511311 -35275144 - L1MC/D LINE L1 -823 5536 5474 1143 205 26 4 chr12 108511311 108511545 -35274910 + MER8 DNA MER2_type 1 239 0 1007 170 52 39 chr12 108511545 108511710 -35274745 - L1MC/D LINE L1 -885 5474 5304 * 3675 214 37 27 chr12 108511691 108512670 -35273785 - L1MC/D LINE L1 -1254 4892 3904 2345 266 71 24 chr12 108512824 108513984 -35272471 + L1M4 LINE L1 2782 4191 -1955 2797 113 9 12 chr12 108513997 108514421 -35272034 + L1PA15 LINE L1 5444 5866 -299 1462 60 35 10 chr12 108514551 108514751 -35271704 - L1P LINE L1 -2100 4046 3842 * 6860 36 2 0 chr12 108514750 108515552 -35270903 + L1PA3 LINE L1 5258 6061 -94 245 227 21 10 chr12 108515626 108515723 -35270732 + (TGGG)n Simple_repeat Simple_repeat 4 101 0 206 134 37 24 chr12 108515736 108515818 -35270637 + (GGGTG)n Simple_repeat Simple_repeat 3 85 0 273 250 130 28 chr12 108517302 108517410 -35269045 - L3b LINE CR1 -115 1468 1350 229 307 131 15 chr12 108518307 108518581 -35267874 + L2 LINE L2 2192 2497 -817 306 183 37 49 chr12 108519307 108519389 -35267066 + L1M4 LINE L1 5013 5093 -1053 1090 118 59 6 chr12 108519518 108519688 -35266767 - AluSg/x SINE Alu -5 305 127 5301 84 4 6 chr12 108519690 108520406 -35266049 - L1PA8 LINE L1 -1 6171 5457 386 270 25 12 chr12 108520418 108520581 -35265874 - FRAM SINE Alu 0 166 2 2047 115 3 7 chr12 108520969 108521265 -35265190 - AluSx SINE Alu -13 299 5 185 363 39 59 chr12 108521415 108521517 -35264938 - L2 LINE L2 -32 3240 3141 5556 138 11 4 chr12 108522339 108523717 -35262738 - L1PA16 LINE L1 -98 6068 4679 325 321 22 36 chr12 108526456 108526809 -35259646 + LTR16B LTR ERVL 38 458 -6 189 74 0 0 chr12 108527633 108527660 -35258795 + (T)n Simple_repeat Simple_repeat 1 27 0 1024 221 7 52 chr12 108527809 108528116 -35258339 + AluSx SINE Alu 5 297 -5 1541 226 82 61 chr12 108528169 108528890 -35257565 - L1M4 LINE L1 -2734 3412 2677 220 308 46 0 chr12 108529046 108529111 -35257344 + L2 LINE L2 3200 3267 -5 7145 190 38 11 chr12 108530454 108532061 -35254394 + L1 LINE L1 3039 4688 -1458 860 178 205 19 chr12 108533707 108533965 -35252490 - L1MB8 LINE L1 -3 6175 5870 2172 116 17 0 chr12 108533965 108534258 -35252197 - AluSx SINE Alu -14 298 1 1653 68 39 1 chr12 108534258 108534541 -35251914 - L1PA8A LINE L1 -690 5441 5151 1140 97 7 0 chr12 108534541 108534685 -35251770 - AluSq/x SINE Alu -168 145 1 282 273 141 71 chr12 108535169 108535367 -35251088 - MARNA DNA Mariner -355 231 20 272 215 183 0 chr12 108535581 108535674 -35250781 - MER103 DNA DNA -12 154 45 523 206 41 41 chr12 108536853 108536999 -35249456 + MER91B DNA MER1_type 44 189 -1 714 242 132 9 chr12 108539285 108539504 -35246951 + MIR SINE MIR 17 262 0 181 354 63 8 chr12 108540946 108541073 -35245382 - L2 LINE L2 -222 3050 2917 2102 145 150 8 chr12 108541899 108542272 -35244183 - MSTA LTR MaLR -2 426 1 382 286 57 50 chr12 108542869 108543152 -35243303 - HAL1 LINE L1 -1 2506 2222 3061 181 22 16 chr12 108543408 108544477 -35241978 - L1MB4 LINE L1 -286 5894 4822 205 333 0 0 chr12 108544951 108545002 -35241453 + L2 LINE L2 3210 3260 -12 1458 24 0 0 chr12 108545950 108546114 -35240341 - L1PA5 LINE L1 0 6154 5991 207 0 0 0 chr12 108546269 108546292 -35240163 + (T)n Simple_repeat Simple_repeat 1 23 0 262 307 79 55 chr12 108546798 108546925 -35239530 - L2 LINE L2 -1 3271 3142 424 252 75 0 chr12 108547369 108547476 -35238979 - L2 LINE L2 -1 3312 3198 253 121 69 52 chr12 108547644 108547702 -35238753 + L2 LINE L2 3214 3272 0 340 266 62 9 chr12 108547850 108547963 -35238492 - MIR SINE MIR -71 191 73 431 339 57 22 chr12 108548384 108548611 -35237844 - L3 LINE CR1 -41 1536 1302 222 214 22 22 chr12 108548802 108548891 -35237564 + (TTA)n Simple_repeat Simple_repeat 1 89 0 434 329 180 21 chr12 108549121 108549544 -35236911 - L3 LINE CR1 -554 1023 534 215 339 0 15 chr12 108549875 108549940 -35236515 - MIR SINE MIR -171 91 28 23 33 0 0 chr12 108551146 108551176 -35235279 + AT_rich Low_complexity Low_complexity 1 30 0 1237 333 145 21 chr12 108551824 108552898 -35233557 + L2 LINE L2 386 1614 -1700 2211 133 42 33 chr12 108552898 108553258 -35233197 + THE1B LTR MaLR 2 364 0 1237 333 145 21 chr12 108553258 108553334 -35233121 + L2 LINE L2 1614 1679 -1635 232 194 60 60 chr12 108553492 108553559 -35232896 - MER5C DNA MER1_type -257 67 1 628 349 74 2 chr12 108553566 108553970 -35232485 + L2 LINE L2 1686 2118 -1196 260 118 0 39 chr12 108554067 108554118 -35232337 + (TTCTCC)n Simple_repeat Simple_repeat 6 54 0 2003 154 0 16 chr12 108554120 108554425 -35232030 - AluSx SINE Alu -12 300 1 424 266 101 0 chr12 108554589 108554698 -35231757 - L2 LINE L2 -1 3312 3193 425 277 61 31 chr12 108554795 108554959 -35231496 - MIR SINE MIR -63 145 17 201 74 0 0 chr12 108555323 108555350 -35231105 + (CA)n Simple_repeat Simple_repeat 1 27 0 344 206 0 0 chr12 108555600 108555668 -35230787 + MIR SINE MIR 67 134 -128 756 220 27 21 chr12 108555750 108555936 -35230519 + MIR SINE MIR 76 262 0 2187 110 0 0 chr12 108556568 108556849 -35229606 + AluSq SINE Alu 1 281 -32 210 354 15 0 chr12 108556956 108557021 -35229434 + L2 LINE L2 1136 1201 -2113 511 265 73 63 chr12 108557086 108557388 -35229067 + MLT1H LTR MaLR 50 354 -195 3759 279 131 42 chr12 108557492 108559436 -35227019 + L2 LINE L2 1211 3313 0 380 274 26 0 chr12 108559428 108559545 -35226910 - MIR SINE MIR -59 203 84 * 476 322 78 6 chr12 108559953 108560133 -35226322 + MIR SINE MIR 19 211 -51 241 313 184 25 chr12 108560835 108560998 -35225457 - MIR3 SINE MIR 0 208 20 451 139 129 20 chr12 108561923 108562024 -35224431 - MER103 DNA DNA -54 112 1 977 313 30 44 chr12 108562654 108563086 -35223369 + LTR16A LTR ERVL 16 441 -9 1834 175 35 23 chr12 108563185 108563533 -35222922 + MLT1A1 LTR MaLR 11 362 -3 714 291 36 76 chr12 108563546 108563966 -35222489 + L2 LINE L2 2823 3225 -88 5610 181 66 34 chr12 108564024 108565320 -35221135 + Charlie1a DNA MER1_type 73 1410 -45 435 71 0 0 chr12 108565330 108565386 -35221069 - MER41A LTR ERV1 -99 455 400 370 180 0 0 chr12 108565388 108565449 -35221006 + Charlie1a DNA MER1_type 1395 1455 0 186 245 19 19 chr12 108565450 108565503 -35220952 + L2 LINE L2 3255 3307 -6 2111 95 13 48 chr12 108565681 108565996 -35220459 - AluSx SINE Alu -8 304 1 2161 156 151 39 chr12 108567922 108568385 -35218070 - MLT2B2 LTR ERVL 0 515 1 376 296 31 0 chr12 108570215 108570313 -35216142 + MIR3 SINE MIR 81 181 -27 259 248 38 98 chr12 108570744 108570877 -35215578 + L2 LINE L2 2965 3089 -183 481 235 167 32 chr12 108570974 108571225 -35215230 + L2 LINE L2 3029 3313 0 195 330 149 21 chr12 108572182 108572276 -35214179 - MIR SINE MIR -60 148 43 390 311 47 27 chr12 108572284 108572432 -35214023 + MIR SINE MIR 16 166 -96 186 133 0 0 chr12 108573069 108573099 -35213356 + (A)n Simple_repeat Simple_repeat 1 30 0 1185 186 31 40 chr12 108573983 108574209 -35212246 + MER58A DNA MER1_type 1 224 0 396 272 147 7 chr12 108574307 108574443 -35212012 - MIR3 SINE MIR -37 171 17 744 303 5 0 chr12 108575553 108575748 -35210707 + MIR SINE MIR 23 218 -44 268 315 182 40 chr12 108575758 108576060 -35210395 + L2 LINE L2 2926 3270 -2 240 259 0 0 chr12 108576065 108576123 -35210332 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 434 290 32 0 chr12 108576334 108576458 -35209997 - MER91B DNA MER1_type -62 128 1 433 287 38 45 chr12 108576717 108576874 -35209581 + MIR3 SINE MIR 21 176 -32 252 213 16 0 chr12 108576904 108576965 -35209490 + (TAA)n Simple_repeat Simple_repeat 2 63 0 193 292 0 28 chr12 108577603 108577675 -35208780 - MIR SINE MIR -148 114 45 259 204 61 0 chr12 108578625 108578702 -35207753 + MIR SINE MIR 38 122 -86 981 276 126 63 chr12 108579089 108579389 -35207066 + LTR16C LTR ERVL 2 343 -148 4158 40 0 0 chr12 108579389 108579860 -35206595 - L1PA4 LINE L1 0 6155 5685 981 276 126 63 chr12 108579860 108580020 -35206435 + LTR16C LTR ERVL 343 491 0 199 255 59 0 chr12 108580246 108580297 -35206158 + MIR SINE MIR 198 251 -11 234 339 50 58 chr12 108580393 108580514 -35205941 - L2 LINE L2 0 3272 3153 364 245 133 10 chr12 108581341 108581439 -35205016 + MIR SINE MIR 59 168 -94 623 304 79 54 chr12 108581488 108581880 -35204575 + L2 LINE L2 2912 3313 0 428 273 20 0 chr12 108582562 108582661 -35203794 - MIR SINE MIR -73 135 35 387 273 18 36 chr12 108582648 108582758 -35203697 + L2 LINE L2 3136 3243 -29 * 413 308 8 0 chr12 108583198 108583315 -35203140 - MER5A DNA MER1_type -50 139 22 22 0 0 0 chr12 108583612 108583634 -35202821 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr12 108583980 108584003 -35202452 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 760 271 11 5 chr12 108584335 108584523 -35201932 - MER3 DNA MER1_type -20 189 1 1600 152 71 11 chr12 108584780 108585063 -35201392 + AluJo SINE Alu 1 300 -12 21 71 0 0 chr12 108585506 108585548 -35200907 + AT_rich Low_complexity Low_complexity 1 42 0 337 240 62 0 chr12 108585580 108585709 -35200746 - MER113 DNA MER1_type? -384 137 1 1349 0 0 0 chr12 108585777 108585917 -35200538 - L1PA3 LINE L1 -2 6153 6014 340 184 0 40 chr12 108586437 108586513 -35199942 - MER103 DNA DNA -1 165 93 455 266 0 9 chr12 108586585 108586698 -35199757 + MIR SINE MIR 111 222 -40 2191 110 3 7 chr12 108586736 108587044 -35199411 + AluSx SINE Alu 1 307 -5 317 171 136 45 chr12 108587044 108587125 -35199330 - MER103 DNA DNA -72 94 3 280 256 13 13 chr12 108587489 108587567 -35198888 + L2 LINE L2 3234 3311 -2 891 250 34 41 chr12 108588406 108588674 -35197781 + LTR33 LTR ERVL 5 270 -251 393 245 182 7 chr12 108588862 108589005 -35197450 + MIR SINE MIR 95 262 0 21 0 0 0 chr12 108589033 108589054 -35197401 + AT_rich Low_complexity Low_complexity 1 21 0 588 274 87 29 chr12 108589705 108589946 -35196509 + MIR SINE MIR 8 262 0 720 289 78 4 chr12 108590183 108590415 -35196040 - MIR SINE MIR -12 250 2 668 285 6 11 chr12 108590565 108590744 -35195711 - MER5B DNA MER1_type 0 178 1 246 203 94 0 chr12 108591387 108591451 -35195004 + MLT1L LTR MaLR 14 83 -532 849 263 102 13 chr12 108591619 108591923 -35194532 + LTR33 LTR ERVL 187 517 -4 808 256 43 28 chr12 108592490 108592701 -35193754 - MIR SINE MIR -29 233 20 252 128 0 0 chr12 108592718 108592757 -35193698 - MIR SINE MIR -60 148 110 1582 242 177 18 chr12 108593002 108593776 -35192679 - Charlie2 DNA MER1_type -2 2860 1964 341 264 154 66 chr12 108593776 108593958 -35192497 + L2 LINE L2 3113 3310 -3 284 167 37 0 chr12 108594773 108594827 -35191628 - MIR SINE MIR -93 169 114 2164 114 3 43 chr12 108594867 108595192 -35191263 + AluSx SINE Alu 1 312 0 394 299 10 21 chr12 108595201 108595298 -35191157 + MIR SINE MIR 20 115 -147 210 313 25 50 chr12 108595336 108595416 -35191039 - MIR SINE MIR -154 108 31 581 283 32 53 chr12 108596493 108596740 -35189715 - MIR SINE MIR 0 262 21 381 117 0 0 chr12 108597263 108597323 -35189132 + (CAT)n Simple_repeat Simple_repeat 1 60 0 618 307 64 22 chr12 108597332 108597757 -35188698 - LTR16C LTR ERVL 0 491 6 362 344 53 0 chr12 108597818 108597969 -35188486 - MIR SINE MIR -68 194 36 547 306 19 0 chr12 108598164 108598321 -35188134 - MIR SINE MIR -40 222 63 303 337 57 50 chr12 108598911 108599220 -35187235 - L1MC4a LINE L1 -90 6031 5719 26 30 0 0 chr12 108601466 108601499 -35184956 + AT_rich Low_complexity Low_complexity 1 33 0 2287 156 19 8 chr12 108602048 108602419 -35184036 - THE1C LTR MaLR 0 375 1 203 143 0 24 chr12 108602681 108602723 -35183732 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 67 0 0 chr12 108602735 108602765 -35183690 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 931 102 36 7 chr12 108602792 108602929 -35183526 - L1MB2 LINE L1 -8 6163 6023 539 221 158 29 chr12 108602933 108603173 -35183282 - L1MC5 LINE L1 -163 7798 7528 347 243 51 40 chr12 108603380 108603557 -35182898 - L1ME4a LINE L1 -21 6100 5922 316 158 105 26 chr12 108603629 108603705 -35182750 + L1MC5 LINE L1 7832 7913 -48 231 234 0 31 chr12 108603709 108603773 -35182682 - MIR SINE MIR 0 262 201 722 265 99 73 chr12 108603824 108604319 -35182136 - L1ME4a LINE L1 -306 5815 5306 2123 104 25 41 chr12 108604319 108604637 -35181818 - AluSq SINE Alu 0 313 1 722 265 99 73 chr12 108604637 108604687 -35181768 - L1ME4a LINE L1 -815 5306 5259 2979 38 3 3 chr12 108605153 108605525 -35180930 - L1P LINE L1 -3428 2718 2347 211 285 161 8 chr12 108605561 108605691 -35180764 - L2 LINE L2 -12 3301 3152 377 293 80 20 chr12 108606415 108606565 -35179890 - MIR3 SINE MIR -8 200 42 326 305 153 0 chr12 108606612 108606743 -35179712 - MER5A DNA MER1_type -37 152 2 27991 43 38 2 chr12 108607198 108610669 -35175786 - L1P LINE L1 -2551 3595 1 270 318 72 80 chr12 108610834 108611098 -35175357 - MIR SINE MIR 0 262 1 1719 101 48 4 chr12 108611362 108611660 -35174795 + AluSq SINE Alu 29 337 0 305 156 31 0 chr12 108612937 108613001 -35173454 - L1MA7 LINE L1 -10 6281 6216 230 270 0 16 chr12 108613007 108613070 -35173385 + L1MC4 LINE L1 6648 6709 -1333 252 273 23 23 chr12 108613097 108613185 -35173270 - L1MC4 LINE L1 -1341 6701 6614 237 284 23 23 chr12 108613141 108613229 -35173226 + L1MC4 LINE L1 6614 6701 -1341 * 579 158 37 37 chr12 108613217 108613387 -35173068 - L1MA7 LINE L1 -15 6288 6111 276 30 0 0 chr12 108613445 108613478 -35172977 + (TG)n Simple_repeat Simple_repeat 2 34 0 184 290 43 14 chr12 108613696 108613765 -35172690 - L2 LINE L2 -1 3312 3242 2221 112 3 0 chr12 108613836 108614123 -35172332 + AluSx SINE Alu 3 290 -22 211 285 161 8 chr12 108614278 108614408 -35172047 - L2 LINE L2 -12 3301 3152 377 293 80 20 chr12 108615133 108615283 -35171172 - MIR3 SINE MIR -8 200 42 326 305 153 0 chr12 108615330 108615461 -35170994 - MER5A DNA MER1_type -37 152 2 206 280 0 0 chr12 108617125 108617175 -35169280 + MER5A DNA MER1_type 136 185 -4 219 321 82 31 chr12 108617264 108617423 -35169032 - L2 LINE L2 -283 2989 2823 26 30 0 0 chr12 108617753 108617786 -35168669 + AT_rich Low_complexity Low_complexity 1 33 0 712 249 25 76 chr12 108618411 108618687 -35167768 - MIR SINE MIR 0 262 1 424 281 37 15 chr12 108618891 108619026 -35167429 + MIR SINE MIR 37 174 -88 232 280 46 80 chr12 108619176 108619351 -35167104 + MLT1K LTR MaLR 7 175 -413 556 261 0 0 chr12 108620510 108620629 -35165826 - L2 LINE L2 0 3313 3195 3126 168 8 77 chr12 108621926 108622521 -35163934 + MLT2B3 LTR ERVL 1 554 0 443 329 59 0 chr12 108623136 108623288 -35163167 - MIR3 SINE MIR -3 205 45 25 51 0 0 chr12 108623511 108623550 -35162905 + AT_rich Low_complexity Low_complexity 1 39 0 437 301 14 21 chr12 108624570 108624713 -35161742 - MIR3 SINE MIR -3 205 64 845 270 93 61 chr12 108624984 108625641 -35160814 - L2 LINE L2 0 3313 2633 2028 226 21 19 chr12 108626476 108626990 -35159465 - L2 LINE L2 -645 2669 2155 291 211 92 13 chr12 108628074 108628150 -35158305 - MIR SINE MIR -136 126 45 1666 204 13 16 chr12 108628270 108628583 -35157872 + AluJo SINE Alu 1 312 0 726 315 44 8 chr12 108630495 108630746 -35155709 + MIR SINE MIR 3 262 0 817 221 175 14 chr12 108631229 108631446 -35155009 - MIR SINE MIR 0 262 11 282 262 288 0 chr12 108631620 108631811 -35154644 - L3 LINE CR1 -3 1574 1329 217 204 0 23 chr12 108631812 108631856 -35154599 + MIR SINE MIR 220 262 0 294 276 35 76 chr12 108631981 108632126 -35154329 - MIR SINE MIR -8 254 116 228 35 0 0 chr12 108632274 108632303 -35154152 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 372 75 0 28 chr12 108633408 108633487 -35152968 + L1MA8 LINE L1 6209 6282 -9 23 54 0 0 chr12 108633487 108633524 -35152931 + AT_rich Low_complexity Low_complexity 1 37 0 345 256 104 32 chr12 108633652 108633777 -35152678 + MER5A DNA MER1_type 52 185 -4 33730 52 6 2 chr12 108633792 108639441 -35147014 + L1PA5 LINE L1 484 6154 0 4444 81 17 3 chr12 108639441 108640019 -35146436 + L1PA13 LINE L1 5570 6155 -8 446 266 84 44 chr12 108640479 108640705 -35145750 + MIR SINE MIR 26 260 -2 741 319 115 25 chr12 108640839 108641281 -35145174 + MLT1K LTR MaLR 61 542 -46 558 227 117 35 chr12 108641471 108641722 -35144733 - L2 LINE L2 0 3272 2998 183 227 0 45 chr12 108641941 108641985 -35144470 + MIR SINE MIR 57 98 -164 1256 224 11 14 chr12 108641986 108642263 -35144192 + MER82 DNA MER2_type 358 633 -20 189 178 0 89 chr12 108642414 108642459 -35143996 + MIR SINE MIR 69 109 -153 397 353 129 13 chr12 108642772 108642996 -35143459 + MIR SINE MIR 13 262 0 192 216 0 0 chr12 108643893 108643944 -35142511 + (CA)n Simple_repeat Simple_repeat 2 52 0 263 299 80 29 chr12 108644568 108644705 -35141750 - MIR SINE MIR -12 250 107 360 64 0 0 chr12 108645266 108645313 -35141142 + (TC)n Simple_repeat Simple_repeat 2 48 0 227 256 47 0 chr12 108645337 108645423 -35141032 + L1MC4 LINE L1 6614 6703 -1339 243 220 22 33 chr12 108645427 108645518 -35140937 + L1MC4 LINE L1 6614 6703 -1339 248 177 32 0 chr12 108645533 108645595 -35140860 - L1MC4 LINE L1 -1340 6702 6639 369 297 27 77 chr12 108646638 108646897 -35139558 + L1ME4a LINE L1 5876 6121 0 511 386 14 0 chr12 108647668 108647891 -35138564 + MIR SINE MIR 19 244 -18 769 306 82 33 chr12 108648295 108648838 -35137617 + L2 LINE L2 2430 3008 -264 987 256 33 83 chr12 108649011 108649028 -35137427 + LTR37B LTR ERV1 9 25 -443 2106 125 7 0 chr12 108649028 108649324 -35137131 + AluSq SINE Alu 1 298 -15 216 0 0 0 chr12 108649324 108649348 -35137107 + (TA)n Simple_repeat Simple_repeat 2 25 0 987 256 33 83 chr12 108649348 108649813 -35136642 + LTR37B LTR ERV1 23 468 0 2155 125 7 0 chr12 108650048 108650337 -35136118 + AluSq SINE Alu 1 291 -22 932 271 141 13 chr12 108650507 108650890 -35135565 + MLT1J2 LTR MaLR 1 432 -18 21 0 0 0 chr12 108651031 108651052 -35135403 + AT_rich Low_complexity Low_complexity 1 21 0 280 265 129 14 chr12 108651131 108651278 -35135177 + MER103 DNA DNA 1 164 -2 279 304 94 14 chr12 108651847 108651985 -35134470 + MIR SINE MIR 108 256 -6 222 292 0 31 chr12 108652020 108652085 -35134370 + GA-rich Low_complexity Low_complexity 4 66 0 230 79 0 26 chr12 108653276 108653314 -35133141 + (TA)n Simple_repeat Simple_repeat 1 37 0 189 336 42 25 chr12 108654327 108654446 -35132009 + L2 LINE L2 2917 3037 -235 1849 131 4 8 chr12 108655223 108655491 -35130964 - AluSx SINE Alu -45 267 1 189 341 0 0 chr12 108655921 108655965 -35130490 + L2 LINE L2 3151 3194 -78 359 193 26 18 chr12 108655984 108656098 -35130357 + GA-rich Low_complexity Low_complexity 3 117 0 234 339 48 32 chr12 108656203 108656327 -35130128 - MIR SINE MIR -95 167 42 527 253 33 33 chr12 108656974 108657124 -35129331 - MIR SINE MIR -97 165 16 181 256 0 0 chr12 108657159 108657202 -35129253 + MIR SINE MIR 8 50 -212 660 271 7 0 chr12 108657314 108657458 -35128997 - MIR SINE MIR -22 240 96 395 291 97 19 chr12 108658007 108658213 -35128242 - L2 LINE L2 -8 3305 3084 232 164 0 33 chr12 108658242 108658303 -35128152 - L1MA9 LINE L1 -3 6309 6251 39 68 0 0 chr12 108658313 108658387 -35128068 + AT_rich Low_complexity Low_complexity 1 74 0 2177 120 0 0 chr12 108658387 108658678 -35127777 - AluSg SINE Alu -19 291 1 3980 157 44 37 chr12 108658692 108659506 -35126949 - L1MA9 LINE L1 -20 6292 5473 675 291 38 38 chr12 108659667 108659904 -35126551 + MIR SINE MIR 2 238 -24 321 214 11 11 chr12 108659937 108660026 -35126429 - L1MC4 LINE L1 -1340 6702 6614 189 0 0 0 chr12 108660026 108660047 -35126408 + (TA)n Simple_repeat Simple_repeat 1 21 0 337 289 115 32 chr12 108660078 108660302 -35126153 + MIR SINE MIR 16 260 -2 233 56 0 28 chr12 108660333 108660369 -35126086 + (GGA)n Simple_repeat Simple_repeat 3 37 0 184 324 54 0 chr12 108660369 108660443 -35126012 + MIR SINE MIR 20 97 -111 215 59 0 29 chr12 108660869 108660903 -35125552 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 736 240 107 5 chr12 108661174 108661370 -35125085 + MIR SINE MIR 26 241 -21 320 342 27 9 chr12 108661821 108661932 -35124523 + MIR SINE MIR 32 144 -118 638 276 138 0 chr12 108662189 108662406 -35124049 - MIR SINE MIR -14 248 2 324 289 88 0 chr12 108664155 108664269 -35122186 + L2 LINE L2 3188 3311 -2 222 233 19 10 chr12 108664526 108664629 -35121826 + GA-rich Low_complexity Low_complexity 4 107 0 362 268 127 19 chr12 108665526 108665683 -35120772 - MIR SINE MIR -48 214 41 180 236 28 111 chr12 108665684 108665828 -35120627 + MIR SINE MIR 100 231 -31 1041 64 29 12 chr12 108666770 108666943 -35119512 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 2284 95 0 3 chr12 108668168 108668464 -35117991 + AluSx SINE Alu 1 295 -17 187 354 62 18 chr12 108668559 108668672 -35117783 + L2 LINE L2 3102 3219 -53 277 240 130 50 chr12 108668706 108668806 -35117649 + MIR3 SINE MIR 76 183 -25 274 262 166 43 chr12 108668914 108669101 -35117354 - MIR SINE MIR -18 244 35 4086 157 23 11 chr12 108669783 108670485 -35115970 + L1MC2 LINE L1 5624 6333 -11 2276 125 0 0 chr12 108670485 108670798 -35115657 + AluSp SINE Alu 1 313 0 499 276 175 40 chr12 108670897 108671125 -35115330 - MIR SINE MIR 0 262 4 341 320 77 33 chr12 108671208 108671389 -35115066 - L2 LINE L2 -2 3270 3082 342 283 25 1 chr12 108671460 108671608 -35114847 - L1P LINE L1 -1142 5004 4853 2287 156 19 8 chr12 108672143 108672514 -35113941 - THE1C LTR MaLR 0 375 1 203 143 0 24 chr12 108672776 108672818 -35113637 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 67 0 0 chr12 108672829 108672859 -35113596 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1929 173 67 3 chr12 108672886 108673257 -35113198 - L1MB2 LINE L1 -8 6163 5769 14425 26 0 0 chr12 108673272 108675636 -35110819 - L1PA2 LINE L1 0 6155 3793 250 148 0 33 chr12 108675744 108675805 -35110650 + (TA)n Simple_repeat Simple_repeat 1 59 0 251 209 22 33 chr12 108675805 108675896 -35110559 + L1MC4 LINE L1 6614 6703 -1339 1107 129 0 0 chr12 108675898 108676076 -35110379 + (TA)n Simple_repeat Simple_repeat 2 179 0 232 278 31 81 chr12 108677121 108677380 -35109075 + L1ME4a LINE L1 5876 6121 0 488 390 14 0 chr12 108678151 108678374 -35108081 + MIR SINE MIR 19 244 -18 774 309 82 32 chr12 108678778 108679320 -35107135 + L2 LINE L2 2430 3008 -264 987 256 33 83 chr12 108679493 108679510 -35106945 + LTR37B LTR ERV1 9 25 -443 2374 107 3 0 chr12 108679510 108679819 -35106636 + AluSq SINE Alu 1 310 -3 324 0 0 0 chr12 108679819 108679855 -35106600 + (TA)n Simple_repeat Simple_repeat 2 37 0 987 256 33 83 chr12 108679855 108680320 -35106135 + LTR37B LTR ERV1 23 468 0 2155 125 7 0 chr12 108680555 108680844 -35105611 + AluSq SINE Alu 1 291 -22 932 271 141 13 chr12 108681014 108681397 -35105058 + MLT1J2 LTR MaLR 1 432 -18 21 0 0 0 chr12 108681538 108681559 -35104896 + AT_rich Low_complexity Low_complexity 1 21 0 280 265 129 14 chr12 108681638 108681785 -35104670 + MER103 DNA DNA 1 164 -2 279 304 94 14 chr12 108682354 108682492 -35103963 + MIR SINE MIR 108 256 -6 222 292 0 31 chr12 108682527 108682592 -35103863 + GA-rich Low_complexity Low_complexity 4 66 0 230 79 0 26 chr12 108683783 108683821 -35102634 + (TA)n Simple_repeat Simple_repeat 2 38 0 203 328 42 25 chr12 108684830 108684949 -35101506 + L2 LINE L2 2917 3037 -235 208 211 0 0 chr12 108685256 108685294 -35101161 + G-rich Low_complexity Low_complexity 5 42 0 1849 131 4 8 chr12 108685726 108685994 -35100461 - AluSx SINE Alu -45 267 1 189 341 0 0 chr12 108686424 108686468 -35099987 + L2 LINE L2 3151 3194 -78 359 193 26 18 chr12 108686487 108686601 -35099854 + GA-rich Low_complexity Low_complexity 3 117 0 220 347 48 32 chr12 108686706 108686830 -35099625 - MIR SINE MIR -95 167 42 527 253 33 33 chr12 108687477 108687627 -35098828 - MIR SINE MIR -97 165 16 181 256 0 0 chr12 108687662 108687705 -35098750 + MIR SINE MIR 8 50 -212 660 271 7 0 chr12 108687817 108687961 -35098494 - MIR SINE MIR -22 240 96 395 291 97 19 chr12 108688510 108688716 -35097739 - L2 LINE L2 -8 3305 3084 232 164 0 33 chr12 108688745 108688806 -35097649 - L1MA9 LINE L1 -3 6309 6251 39 68 0 0 chr12 108688816 108688890 -35097565 + AT_rich Low_complexity Low_complexity 1 74 0 2177 120 0 0 chr12 108688890 108689181 -35097274 - AluSg SINE Alu -19 291 1 3927 161 44 38 chr12 108689195 108690010 -35096445 - L1MA9 LINE L1 -20 6292 5473 675 291 38 38 chr12 108690171 108690408 -35096047 + MIR SINE MIR 2 238 -24 321 214 11 11 chr12 108690441 108690530 -35095925 - L1MC4 LINE L1 -1340 6702 6614 27 0 0 0 chr12 108690530 108690557 -35095898 + AT_rich Low_complexity Low_complexity 1 27 0 358 282 115 32 chr12 108690580 108690804 -35095651 + MIR SINE MIR 16 260 -2 233 56 0 28 chr12 108690835 108690871 -35095584 + (GGA)n Simple_repeat Simple_repeat 3 37 0 184 324 54 0 chr12 108690871 108690945 -35095510 + MIR SINE MIR 20 97 -111 215 59 0 29 chr12 108691371 108691405 -35095050 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 694 250 107 5 chr12 108691676 108691872 -35094583 + MIR SINE MIR 26 241 -21 320 342 27 9 chr12 108692323 108692434 -35094021 + MIR SINE MIR 32 144 -118 650 272 138 0 chr12 108692691 108692908 -35093547 - MIR SINE MIR -14 248 2 345 296 78 0 chr12 108694657 108694772 -35091683 + L2 LINE L2 3188 3311 -2 222 233 19 10 chr12 108695029 108695132 -35091323 + GA-rich Low_complexity Low_complexity 4 107 0 345 266 127 25 chr12 108696029 108696187 -35090268 - MIR SINE MIR -48 214 41 180 236 28 111 chr12 108696188 108696332 -35090123 + MIR SINE MIR 100 231 -31 951 102 28 11 chr12 108697275 108697452 -35089003 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2284 95 0 3 chr12 108698672 108698968 -35087487 + AluSx SINE Alu 1 295 -17 187 354 62 18 chr12 108699063 108699176 -35087279 + L2 LINE L2 3102 3219 -53 277 240 130 50 chr12 108699210 108699310 -35087145 + MIR3 SINE MIR 76 183 -25 274 262 166 43 chr12 108699418 108699605 -35086850 - MIR SINE MIR -18 244 35 4086 157 23 11 chr12 108700287 108700989 -35085466 + L1MC2 LINE L1 5624 6333 -11 2276 125 0 0 chr12 108700989 108701302 -35085153 + AluSp SINE Alu 1 313 0 499 276 175 40 chr12 108701401 108701629 -35084826 - MIR SINE MIR 0 262 4 341 320 77 33 chr12 108701712 108701893 -35084562 - L2 LINE L2 -2 3270 3082 710 226 7 0 chr12 108701966 108702121 -35084334 - L1P LINE L1 -1142 5004 4849 908 154 0 0 chr12 108702121 108702256 -35084199 + L1PA15 LINE L1 6028 6163 -2 248 111 32 63 chr12 108702263 108702326 -35084129 + A-rich Low_complexity Low_complexity 2 62 0 211 379 0 0 chr12 108702344 108702447 -35084008 - MIR SINE MIR 0 262 160 25 31 0 0 chr12 108702494 108702526 -35083929 + AT_rich Low_complexity Low_complexity 1 32 0 394 322 96 5 chr12 108703204 108703412 -35083043 + MIR SINE MIR 35 261 -1 2216 95 0 26 chr12 108703436 108703741 -35082714 + AluSx SINE Alu 1 297 -15 240 35 0 0 chr12 108703741 108703770 -35082685 + (TA)n Simple_repeat Simple_repeat 1 29 0 1052 308 116 32 chr12 108703791 108704502 -35081953 - L2 LINE L2 -8 3305 2530 730 314 127 22 chr12 108704800 108705304 -35081151 - L1ME LINE L1 -301 5820 5264 294 143 0 0 chr12 108705316 108705365 -35081090 + (TA)n Simple_repeat Simple_repeat 2 50 0 415 195 13 0 chr12 108707289 108707366 -35079089 - AluY SINE Alu -230 80 3 257 323 101 0 chr12 108708286 108708385 -35078070 + MIR SINE MIR 42 150 -112 1104 295 71 33 chr12 108708843 108709569 -35076886 - L2 LINE L2 -7 3306 2557 2112 120 0 40 chr12 108710098 108710423 -35076032 + AluSx SINE Alu 1 312 0 404 381 0 0 chr12 108711163 108711310 -35075145 - MIR SINE MIR -110 152 6 536 269 58 0 chr12 108711433 108711589 -35074866 + MER103 DNA DNA 2 166 0 366 295 73 18 chr12 108712585 108712770 -35073685 + MIR SINE MIR 45 237 -25 200 315 0 0 chr12 108712797 108712851 -35073604 - MER5B DNA MER1_type 0 178 125 706 294 75 27 chr12 108713009 108713599 -35072856 + L1M4 LINE L1 5257 5873 -297 627 207 8 0 chr12 108713708 108713829 -35072626 - MIR SINE MIR -57 205 84 216 283 0 17 chr12 108714269 108714329 -35072126 + MER5B DNA MER1_type 101 159 -19 562 269 71 16 chr12 108714342 108714528 -35071927 + MIR SINE MIR 2 191 -61 1929 140 3 44 chr12 108714614 108714935 -35071520 - AluSx SINE Alu -4 308 1 240 163 0 20 chr12 108715091 108715140 -35071315 + MIR SINE MIR 115 162 -100 282 29 0 0 chr12 108715239 108715274 -35071181 + (CA)n Simple_repeat Simple_repeat 2 36 0 2603 155 86 137 chr12 108715575 108715855 -35070600 - L1MC3 LINE L1 -12 7773 7480 2090 100 55 7 chr12 108715855 108716145 -35070310 - AluSq SINE Alu -9 304 1 2603 155 86 137 chr12 108716145 108716682 -35069773 - L1MC3 LINE L1 -305 7480 6998 2101 120 0 0 chr12 108716704 108716987 -35069468 + AluSx SINE Alu 11 293 -19 30 27 0 0 chr12 108717015 108717052 -35069403 + AT_rich Low_complexity Low_complexity 1 37 0 830 285 67 47 chr12 108717301 108717390 -35069065 + MER45C DNA AcHobo 1 87 -866 2206 89 0 0 chr12 108717390 108717672 -35068783 - AluY SINE Alu -14 297 16 830 285 67 47 chr12 108717672 108717943 -35068512 + MER45C DNA AcHobo 87 368 -585 947 175 21 26 chr12 108718193 108718382 -35068073 + MER45C DNA AcHobo 766 953 0 697 237 28 47 chr12 108718389 108718600 -35067855 + MIR SINE MIR 2 208 -54 289 267 107 27 chr12 108719097 108719247 -35067208 - MER103 DNA DNA -3 163 2 481 303 21 28 chr12 108719588 108719730 -35066725 - MIR SINE MIR -102 160 20 306 291 60 15 chr12 108720181 108720315 -35066140 - L2 LINE L2 -8 3305 3166 276 391 56 6 chr12 108720408 108720569 -35065886 + MIR SINE MIR 24 192 -70 704 244 38 38 chr12 108721308 108721521 -35064934 - MIR SINE MIR -10 252 40 476 248 60 8 chr12 108722334 108722467 -35063988 - MIR3 SINE MIR -37 171 32 284 316 103 17 chr12 108722649 108722823 -35063632 + MER5A DNA MER1_type 1 189 0 420 236 24 31 chr12 108723733 108723860 -35062595 - MIR3 SINE MIR -43 165 40 465 251 163 25 chr12 108724973 108725176 -35061279 - L2 LINE L2 -8 3305 3075 273 57 0 0 chr12 108725465 108725500 -35060955 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 198 91 0 0 chr12 108725579 108725612 -35060843 + (T)n Simple_repeat Simple_repeat 1 33 0 361 336 67 0 chr12 108726017 108726166 -35060289 - MIR SINE MIR -18 244 86 5409 104 12 5 chr12 108726322 108727064 -35059391 - L1MA2 LINE L1 -1 6303 5557 913 303 64 43 chr12 108727816 108728391 -35058064 - L1ME2 LINE L1 -279 5885 5299 1008 244 110 65 chr12 108728969 108729214 -35057241 - L1MC4a LINE L1 -1634 6174 5941 2079 128 3 3 chr12 108729214 108729510 -35056945 - AluSc SINE Alu -13 296 1 1008 244 110 65 chr12 108729510 108729847 -35056608 - L1MC4a LINE L1 -1867 5941 5566 446 242 23 31 chr12 108729848 108729976 -35056479 + MER94 DNA DNA 2 128 -6 227 284 112 15 chr12 108730586 108730720 -35055735 - L1MC4a LINE L1 -2322 5486 5340 356 281 61 7 chr12 108731483 108731608 -35054847 + LTR40b LTR ERVL 72 179 -283 562 296 65 23 chr12 108731673 108731889 -35054566 + LTR40b LTR ERVL 120 344 -118 1182 277 53 55 chr12 108732015 108732520 -35053935 + MLT1J LTR MaLR 1 504 -7 595 322 103 38 chr12 108733031 108733506 -35052949 - L2 LINE L2 -3 3310 2805 470 145 26 0 chr12 108733538 108733614 -35052841 - MADE1 DNA Mariner 0 80 3 1309 214 13 19 chr12 108733652 108733970 -35052485 - MER63 DNA MER1_type -49 1011 696 236 294 60 124 chr12 108734309 108734527 -35051928 + L2 LINE L2 3046 3249 -23 22 0 0 0 chr12 108735149 108735171 -35051284 + AT_rich Low_complexity Low_complexity 1 22 0 1544 65 10 0 chr12 108735172 108735372 -35051083 - L1MA3 LINE L1 -2 6303 6102 1828 119 0 28 chr12 108735954 108736263 -35050192 + THE1C LTR MaLR 3 375 0 564 302 125 33 chr12 108736431 108736901 -35049554 - L2 LINE L2 -343 2970 2401 338 183 85 0 chr12 108737098 108737180 -35049275 - MIR SINE MIR -93 169 81 1115 293 57 25 chr12 108737267 108737673 -35048782 + MER69B DNA AcHobo 1 419 -807 1607 242 100 16 chr12 108737714 108738293 -35048162 + MER69B DNA AcHobo 597 1224 -2 206 337 41 0 chr12 108738777 108738875 -35047580 + L2 LINE L2 3196 3297 -16 481 261 0 23 chr12 108738883 108739013 -35047442 - L2 LINE L2 -16 3297 3171 15031 167 28 12 chr12 108739829 108743869 -35042586 - L1MA3 LINE L1 0 7724 3578 2648 100 16 3 chr12 108743869 108744238 -35042217 + THE1C LTR MaLR 1 374 -1 15031 167 28 12 chr12 108744238 108744978 -35041477 - L1MA3 LINE L1 -4146 3578 2852 5597 263 68 23 chr12 108744985 108748721 -35037734 + L1PA15 LINE L1 3 3983 -3601 5236 150 24 175 chr12 108748721 108751585 -35034870 + L1PA15 LINE L1 5210 7602 -1 * 17318 141 38 23 chr12 108751583 108754384 -35032071 - L1M1 LINE L1 -4700 2865 22 315 85 0 0 chr12 108754699 108754746 -35031709 + (TG)n Simple_repeat Simple_repeat 2 48 0 320 330 77 37 chr12 108754764 108755113 -35031342 - L2 LINE L2 -817 2497 2135 219 342 26 8 chr12 108755141 108755258 -35031197 - L2 LINE L2 -1291 2023 1905 604 205 181 68 chr12 108755268 108755584 -35030871 - MLT2B1 LTR ERVL 0 520 74 213 372 60 4 chr12 108755811 108756045 -35030410 - L2 LINE L2 -2378 936 690 244 294 122 22 chr12 108756272 108756411 -35030044 - MER5A DNA MER1_type -1 188 25 209 242 242 22 chr12 108756977 108757068 -35029387 - MIR3 SINE MIR -20 188 78 226 250 73 0 chr12 108757607 108757675 -35028780 - MIR SINE MIR -10 252 180 21 36 0 0 chr12 108760827 108760855 -35025600 + AT_rich Low_complexity Low_complexity 1 28 0 240 297 159 16 chr12 108761966 108762148 -35024307 - MIR SINE MIR -15 247 40 263 280 32 32 chr12 108762873 108762966 -35023489 - MIR SINE MIR -73 135 55 256 267 122 15 chr12 108764419 108764550 -35021905 - MIR3 SINE MIR -21 187 43 286 360 0 0 chr12 108765002 108765102 -35021353 + G-rich Low_complexity Low_complexity 1 100 0 384 99 25 12 chr12 108765883 108765964 -35020491 + (CAG)n Simple_repeat Simple_repeat 3 84 0 235 120 20 20 chr12 108766955 108767005 -35019450 + GA-rich Low_complexity Low_complexity 2 51 0 288 53 0 0 chr12 108768223 108768261 -35018194 + (TG)n Simple_repeat Simple_repeat 2 39 0 1108 53 29 10 chr12 108769906 108770118 -35016337 + (TTTC)n Simple_repeat Simple_repeat 1 216 0 545 265 67 29 chr12 108770870 108771108 -35015347 + L2 LINE L2 3013 3259 -54 1231 247 86 36 chr12 108771181 108771658 -35014797 + LTR33 LTR ERVL 12 512 -9 341 276 9 27 chr12 108772759 108772986 -35013469 + GA-rich Low_complexity Low_complexity 1 222 0 281 254 8 40 chr12 108773402 108773528 -35012927 + CT-rich Low_complexity Low_complexity 2 123 0 203 291 213 7 chr12 108774605 108774746 -35011709 - MIR SINE MIR -82 180 11 264 218 18 0 chr12 108774917 108774972 -35011483 + GA-rich Low_complexity Low_complexity 1 56 0 235 244 39 26 chr12 108775092 108775170 -35011285 + MIR SINE MIR 118 196 -66 1394 217 32 7 chr12 108776939 108777220 -35009235 + AluJo SINE Alu 1 288 -24 202 143 48 0 chr12 108777400 108777442 -35009013 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 209 311 189 0 chr12 108777503 108777593 -35008862 - L2 LINE L2 -2 3270 3164 388 294 68 45 chr12 108777638 108777992 -35008463 - L1ME4a LINE L1 -264 5857 5496 183 320 93 0 chr12 108779000 108779075 -35007380 + MIR SINE MIR 100 181 -81 515 289 88 101 chr12 108779146 108779700 -35006755 - LTR67 LTR ERVL -2 555 9 756 237 155 0 chr12 108779734 108779928 -35006527 - MER58A DNA MER1_type 0 224 1 456 91 0 0 chr12 108780924 108780990 -35005465 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 593 163 12 37 chr12 108781134 108781381 -35005074 + CT-rich Low_complexity Low_complexity 1 240 0 498 234 0 22 chr12 108781449 108781633 -35004822 + CT-rich Low_complexity Low_complexity 1 180 0 454 284 42 47 chr12 108781649 108781864 -35004591 - MLT1J LTR MaLR -78 433 220 327 273 12 91 chr12 108782171 108782280 -35004175 - MIR3 SINE MIR -3 205 112 2299 91 0 3 chr12 108782280 108782578 -35003877 + AluSg SINE Alu 1 297 -13 327 273 12 91 chr12 108782578 108782633 -35003822 - MIR3 SINE MIR -96 112 54 247 380 8 0 chr12 108783523 108783644 -35002811 - L2 LINE L2 -5 3308 3187 1982 137 45 24 chr12 108783898 108784234 -35002221 - MER2 DNA MER2_type -1 343 1 206 213 128 0 chr12 108784940 108784987 -35001468 + L2 LINE L2 3244 3296 -17 22 0 0 0 chr12 108785563 108785585 -35000870 + AT_rich Low_complexity Low_complexity 1 22 0 377 307 28 28 chr12 108786624 108786803 -34999652 + MIR3 SINE MIR 15 193 -15 * 789 258 54 71 chr12 108786801 108787193 -34999262 - L2 LINE L2 -1 3312 2928 811 215 17 0 chr12 108787284 108787456 -34998999 - MER5B DNA MER1_type -2 176 2 21 0 0 0 chr12 108788662 108788683 -34997772 + AT_rich Low_complexity Low_complexity 1 21 0 261 331 0 0 chr12 108789134 108789246 -34997209 - L1ME LINE L1 -505 5657 5546 292 245 142 52 chr12 108789568 108789780 -34996675 - MLT1J LTR MaLR -40 471 241 285 57 71 14 chr12 108789869 108789939 -34996516 + (TA)n Simple_repeat Simple_repeat 2 75 0 189 0 0 0 chr12 108789939 108789960 -34996495 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 402 21 0 0 chr12 108789959 108790006 -34996449 + (GA)n Simple_repeat Simple_repeat 2 48 0 1506 106 126 43 chr12 108790006 108790260 -34996195 - AluSc SINE Alu -34 275 1 326 236 22 22 chr12 108790281 108790370 -34996085 - MLT1J LTR MaLR -422 89 1 407 256 82 53 chr12 108791055 108791262 -34995193 - MIR SINE MIR -13 249 37 1022 273 111 21 chr12 108791707 108792502 -34993953 - L2 LINE L2 0 3313 2450 201 259 95 78 chr12 108792535 108792651 -34993804 + L2 LINE L2 2935 3052 -220 302 362 86 0 chr12 108792916 108793068 -34993387 + MIR3 SINE MIR 44 208 0 570 295 99 43 chr12 108793726 108794442 -34992013 + L1ME4a LINE L1 5314 6069 -52 228 67 0 0 chr12 108794707 108794737 -34991718 + (TA)n Simple_repeat Simple_repeat 1 30 0 1443 190 61 29 chr12 108794751 108795030 -34991425 - AluJo SINE Alu -24 288 1 2018 97 43 10 chr12 108795279 108795578 -34990877 - AluY SINE Alu -2 309 1 230 363 15 7 chr12 108796052 108796187 -34990268 + CT-rich Low_complexity Low_complexity 2 137 0 243 288 62 0 chr12 108796359 108796439 -34990016 - MIR SINE MIR -30 232 148 1026 114 25 0 chr12 108796512 108796670 -34989785 - L1PA15 LINE L1 -212 5953 5792 374 274 20 107 chr12 108796820 108797017 -34989438 - MER5A DNA MER1_type 0 189 10 511 311 26 33 chr12 108797296 108797598 -34988857 + MER102b DNA MER1_type 7 306 -35 253 269 10 67 chr12 108798155 108798259 -34988196 + MLT1H LTR MaLR 8 105 -444 2572 119 8 0 chr12 108798259 108798630 -34987825 + L1PA15 LINE L1 5791 6164 -1 1515 208 72 28 chr12 108798729 108799162 -34987293 + MLT1H LTR MaLR 91 542 -7 1776 222 43 9 chr12 108799180 108799622 -34986833 - MLT1C LTR MaLR -4 463 7 205 318 24 24 chr12 108799899 108799984 -34986471 - MIR SINE MIR -147 115 31 207 318 139 33 chr12 108800007 108800158 -34986297 + MIR SINE MIR 21 146 -62 592 320 64 26 chr12 108800172 108800406 -34986049 + MIR SINE MIR 8 250 -12 377 297 8 16 chr12 108802180 108802308 -34984147 + MLT1H LTR MaLR 42 168 -381 422 279 31 0 chr12 108802754 108802807 -34983648 - L1MA10 LINE L1 0 6334 6282 1706 229 31 33 chr12 108802807 108803327 -34983128 - L1ME1 LINE L1 -45 6121 5603 3358 221 29 15 chr12 108803361 108803548 -34982907 - L1MD2 LINE L1 -26 6727 6544 255 61 0 0 chr12 108803548 108803581 -34982874 + (TG)n Simple_repeat Simple_repeat 2 34 0 3358 221 29 15 chr12 108803581 108804261 -34982194 - L1MD2 LINE L1 -209 6544 5848 232 307 61 26 chr12 108804438 108804552 -34981903 - MIR SINE MIR -72 136 19 1794 265 41 14 chr12 108804859 108804946 -34981509 - L1MD2 LINE L1 -787 5753 5670 516 16 0 0 chr12 108804946 108805007 -34981448 + (TA)n Simple_repeat Simple_repeat 2 62 0 1794 265 41 14 chr12 108805007 108805676 -34980779 - L1MD2 LINE L1 -870 5670 5073 1252 218 52 56 chr12 108805691 108806039 -34980416 - L1MD2 LINE L1 -4652 1888 1540 1468 131 165 58 chr12 108806039 108806367 -34980088 - THE1B LTR MaLR 0 364 2 11942 95 1 1 chr12 108806368 108807948 -34978507 - THE1B-int LTR MaLR 0 1580 1 1968 161 48 22 chr12 108807948 108808303 -34978152 - THE1B LTR MaLR 0 364 1 1252 218 52 56 chr12 108808303 108808397 -34978058 - L1MD2 LINE L1 -4998 1542 1445 1210 219 98 26 chr12 108808399 108808891 -34977564 - L1MEc LINE L1 -1739 4476 3950 279 283 20 20 chr12 108809082 108809181 -34977274 - L1MEc LINE L1 -2280 3935 3837 769 226 44 56 chr12 108809184 108809436 -34977019 - L1MEc LINE L1 -2434 3781 3533 468 243 86 7 chr12 108809869 108810021 -34976434 - L1MEc LINE L1 -4582 1814 1651 * 3491 263 54 52 chr12 108810020 108811778 -34974677 - L1MEc LINE L1 -4600 1796 36 236 283 27 14 chr12 108811909 108812032 -34974423 + MLT1K LTR MaLR 153 278 -337 233 229 143 57 chr12 108812414 108812519 -34973936 + MIR SINE MIR 77 190 -72 5162 83 9 0 chr12 108812546 108813235 -34973220 - L1PA10 LINE L1 -4 6164 5470 603 108 27 9 chr12 108813329 108813440 -34973015 + CT-rich Low_complexity Low_complexity 4 116 0 1731 127 75 8 chr12 108813455 108813722 -34972733 - AluSx SINE Alu -7 305 21 1335 176 38 41 chr12 108813761 108814102 -34972353 + MER63B DNA MER1_type 1 340 -96 250 261 163 11 chr12 108814297 108814389 -34972066 + MER63B DNA MER1_type 323 428 -8 208 302 0 0 chr12 108814823 108814876 -34971579 - L2 LINE L2 -5 3308 3256 289 283 11 11 chr12 108815533 108815625 -34970830 + G-rich Low_complexity Low_complexity 1 92 0 224 331 116 12 chr12 108816227 108816399 -34970056 - L2 LINE L2 -82 3231 3042 1830 226 87 45 chr12 108816443 108816975 -34969480 - MLT2B3 LTR ERVL 0 554 1 276 326 183 36 chr12 108817242 108817739 -34968716 - L2 LINE L2 -527 2787 2218 989 232 69 19 chr12 108817743 108817777 -34968678 - MLT1D LTR MaLR 0 505 474 1651 156 38 61 chr12 108817777 108818123 -34968332 + MER44D DNA MER2_type 2 609 0 989 232 69 19 chr12 108818123 108818534 -34967921 - MLT1D LTR MaLR -31 474 1 3022 177 44 3 chr12 108819081 108819652 -34966803 + MER6A DNA MER2_type 1 594 -11 312 217 0 0 chr12 108820111 108820171 -34966284 + L2 LINE L2 3252 3311 -2 933 167 96 5 chr12 108820713 108820911 -34965544 + MER106A DNA MER1_type 1 216 -20 790 303 60 59 chr12 108821127 108821697 -34964758 - L2 LINE L2 0 3313 2753 232 307 61 26 chr12 108822057 108822171 -34964284 + MIR SINE MIR 19 136 -72 209 297 0 0 chr12 108822872 108822936 -34963519 + G-rich Low_complexity Low_complexity 5 68 0 182 167 0 24 chr12 108824050 108824092 -34962363 + CT-rich Low_complexity Low_complexity 3 43 0 325 296 59 44 chr12 108824349 108824484 -34961971 - L2 LINE L2 -4 3309 3173 443 107 13 0 chr12 108824942 108825017 -34961438 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 250 302 233 0 chr12 108825024 108825153 -34961302 - MIR SINE MIR -1 261 103 998 116 14 13 chr12 108825740 108827746 -34958709 - HSATII Satellite Satellite -9 2007 1 1031 111 12 8 chr12 108827769 108828854 -34957601 - HSATII Satellite Satellite -71 1088 1 10204 91 24 2 chr12 108828990 108830615 -34955840 + L1P LINE L1 1223 2882 -3264 235 222 0 0 chr12 108831054 108831117 -34955338 + L1MC4 LINE L1 6640 6702 -1340 201 74 0 0 chr12 108831118 108831145 -34955310 + (TA)n Simple_repeat Simple_repeat 1 27 0 234 184 92 13 chr12 108832279 108832355 -34954100 + L1ME4a LINE L1 5944 6025 -96 403 115 0 48 chr12 108933043 108933147 -34853308 + (TCCCC)n Simple_repeat Simple_repeat 5 103 0 1679 153 17 21 chr12 108933154 108933442 -34853013 - AluSq SINE Alu -25 288 2 277 370 7 7 chr12 108933443 108933578 -34852877 + HERVL LTR ERVL 2893 3027 -2627 465 244 8 16 chr12 108933662 108933785 -34852670 + HERVL LTR ERVL 3086 3207 -2557 341 228 47 63 chr12 108934244 108934371 -34852084 - LTR36 LTR ERV1 -47 564 440 1034 157 0 0 chr12 108934719 108934866 -34851589 - AluSq/x SINE Alu -164 149 3 200 301 14 0 chr12 108935363 108935436 -34851019 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 219 271 0 0 chr12 108937032 108937080 -34849375 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 6331 113 102 0 chr12 108937680 108938798 -34847657 + L1P LINE L1 3607 4838 -1308 676 276 73 3 chr12 108940911 108941226 -34845229 + L1ME3 LINE L1 5620 5956 -206 758 316 65 20 chr12 108942069 108942471 -34843984 - ERVL LTR ERVL -3287 2477 2058 538 260 0 87 chr12 108942478 108942709 -34843746 + AluJo SINE Alu 1 211 -101 908 227 18 4 chr12 108943210 108943435 -34843020 - MSTD-int LTR MaLR -1409 326 99 1698 199 47 11 chr12 108943449 108943831 -34842624 - MSTD LTR MaLR 0 396 1 3257 109 10 6 chr12 108943961 108944474 -34841981 + L1PA13 LINE L1 5354 5868 -295 268 350 77 0 chr12 108945216 108945359 -34841096 - MER97c DNA MER1_type? -913 177 24 5909 148 15 8 chr12 108945769 108946921 -34839534 - L1P3 LINE L1 -3707 2754 1602 43 76 0 0 chr12 109048258 109048350 -34738105 + AT_rich Low_complexity Low_complexity 1 92 0 235 259 28 28 chr12 109049663 109049771 -34736684 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 26 50 0 0 chr12 109053824 109053864 -34732591 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr12 109061477 109061500 -34724955 + (A)n Simple_repeat Simple_repeat 1 23 0 381 22 0 0 chr12 109061981 109062027 -34724428 + (TC)n Simple_repeat Simple_repeat 2 47 0 270 0 0 0 chr12 109068329 109068359 -34718096 + (A)n Simple_repeat Simple_repeat 1 30 0 38 51 0 0 chr12 109068929 109068988 -34717467 + AT_rich Low_complexity Low_complexity 1 59 0 182 0 77 26 chr12 109070332 109070371 -34716084 + GA-rich Low_complexity Low_complexity 2 42 0 252 77 0 0 chr12 109071489 109071528 -34714927 + (TG)n Simple_repeat Simple_repeat 2 40 0 204 40 0 0 chr12 109075717 109075742 -34710713 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr12 109084479 109084500 -34701955 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 109084873 109084894 -34701561 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 109086846 109086876 -34699579 + AT_rich Low_complexity Low_complexity 1 30 0 1746 149 10 0 chr12 109088512 109088814 -34697641 - MER46B DNA MER2_type -56 180 1 436 334 62 26 chr12 109089170 109089478 -34696977 + MLT1K LTR MaLR 155 473 -115 242 290 16 0 chr12 109089592 109089654 -34696801 - MIR3 SINE MIR -132 76 14 429 299 112 50 chr12 109089968 109090041 -34696414 + MIR SINE MIR 7 74 -188 975 167 62 152 chr12 109090041 109090442 -34696013 + MLT1A1 LTR MaLR 1 365 0 429 299 112 50 chr12 109090442 109090609 -34695846 + MIR SINE MIR 74 262 0 279 0 0 0 chr12 109090621 109090652 -34695803 + (T)n Simple_repeat Simple_repeat 1 31 0 603 263 153 62 chr12 109090757 109091176 -34695279 - LTR16B LTR ERVL 0 464 8 1130 289 92 37 chr12 109091301 109091963 -34694492 + L2 LINE L2 2545 3244 -69 524 324 0 7 chr12 109092054 109092196 -34694259 + MIR SINE MIR 20 160 -102 971 144 58 53 chr12 109092199 109092407 -34694048 - THE1B LTR MaLR 0 364 156 720 274 130 25 chr12 109092442 109092821 -34693634 + LTR16B LTR ERVL 34 464 0 189 0 0 0 chr12 109092926 109092947 -34693508 + (A)n Simple_repeat Simple_repeat 1 21 0 346 250 164 33 chr12 109092959 109093111 -34693344 - MIR SINE MIR 0 262 91 341 115 16 16 chr12 109093126 109093187 -34693268 - MSTB2 LTR MaLR 0 457 397 1055 136 13 0 chr12 109093189 109093344 -34693111 - THE1B LTR MaLR -207 157 1 349 234 125 70 chr12 109093530 109093658 -34692797 + MIR SINE MIR 57 191 -71 355 346 32 22 chr12 109094881 109095066 -34691389 - MIR SINE MIR -55 207 21 875 233 58 122 chr12 109097123 109097540 -34688915 + MLT1B LTR MaLR 1 390 0 2230 121 3 0 chr12 109097934 109098241 -34688214 - AluSp SINE Alu -5 308 1 345 338 102 9 chr12 109098457 109098673 -34687782 - MIR SINE MIR -10 252 17 1054 253 36 42 chr12 109098791 109099175 -34687280 + MLT2C2 LTR ERVL 83 464 0 1977 300 98 17 chr12 109099257 109101331 -34685124 - L1ME LINE L1 -3946 2315 2 615 298 4 42 chr12 109101585 109101823 -34684632 - L2 LINE L2 -141 3172 2944 569 273 32 27 chr12 109101853 109102040 -34684415 - MIR SINE MIR -74 188 1 195 235 0 0 chr12 109102402 109102453 -34684002 + GA-rich Low_complexity Low_complexity 1 51 0 190 282 0 0 chr12 109102779 109102818 -34683637 + L2 LINE L2 3216 3254 -18 2317 264 73 57 chr12 109103264 109104229 -34682226 + L2 LINE L2 2070 3050 -263 335 211 13 13 chr12 109104232 109104308 -34682147 - MER45A DNA AcHobo 0 178 103 43 76 0 0 chr12 109104514 109104606 -34681849 + AT_rich Low_complexity Low_complexity 1 92 0 237 258 16 0 chr12 109105072 109105134 -34681321 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 685 250 63 39 chr12 109105166 109105396 -34681059 - MER5C DNA MER1_type -23 301 92 2547 37 3 0 chr12 109105396 109105691 -34680764 - AluY SINE Alu -15 296 1 685 250 63 39 chr12 109105691 109105786 -34680669 - MER5C DNA MER1_type -232 92 1 244 274 11 0 chr12 109107222 109107317 -34679138 + L1MC/D LINE L1 5335 5430 -929 189 0 0 0 chr12 109107800 109107821 -34678634 + (T)n Simple_repeat Simple_repeat 1 21 0 326 261 270 0 chr12 109108933 109109070 -34677385 + MIR SINE MIR 71 243 -19 610 249 97 0 chr12 109109316 109109481 -34676974 + MIR SINE MIR 34 214 -48 2005 140 0 0 chr12 109109560 109109852 -34676603 - AluSx SINE Alu -20 292 1 346 302 78 39 chr12 109110561 109110740 -34675715 + MER117 DNA MER1_type 12 197 0 2072 145 15 0 chr12 109110840 109111171 -34675284 + MER1B DNA MER1_type 2 337 0 1375 206 84 12 chr12 109111278 109111598 -34674857 + MER2 DNA MER2_type 2 344 0 29 28 0 0 chr12 109111603 109111639 -34674816 + AT_rich Low_complexity Low_complexity 1 36 0 1577 217 137 33 chr12 109111917 109112405 -34674050 - MLT1H LTR MaLR -8 541 3 297 289 77 10 chr12 109112624 109112728 -34673727 + MIR SINE MIR 104 214 -48 397 298 57 0 chr12 109112820 109112944 -34673511 + MIR SINE MIR 36 166 -96 474 343 42 19 chr12 109113036 109113249 -34673206 + L2 LINE L2 7 224 -3090 305 186 14 14 chr12 109113258 109113328 -34673127 - Charlie5 DNA MER1_type -2537 75 6 2705 283 47 12 chr12 109113332 109114464 -34671991 + L2 LINE L2 2133 3311 -2 285 182 0 0 chr12 109114485 109114529 -34671926 + L2 LINE L2 3213 3256 -16 306 0 0 0 chr12 109114546 109114580 -34671875 + (TG)n Simple_repeat Simple_repeat 2 35 0 1443 292 66 8 chr12 109116241 109117466 -34668989 - L1ME3A LINE L1 -220 5950 4650 25 0 0 0 chr12 109117471 109117496 -34668959 + AT_rich Low_complexity Low_complexity 1 25 0 731 192 7 0 chr12 109117496 109117642 -34668813 - L1MD1 LINE L1 -14 6622 6476 9225 243 36 13 chr12 109117642 109120577 -34665878 - L1MD1 LINE L1 -749 5791 2825 3153 212 44 46 chr12 109120578 109121493 -34664962 - L1MD1 LINE L1 -4671 1869 957 6389 83 139 0 chr12 109121507 109122285 -34664170 - L1PA8 LINE L1 0 6172 5347 2053 116 7 3 chr12 109122285 109122578 -34663877 - AluSc SINE Alu -15 294 1 6389 83 139 0 chr12 109122578 109122765 -34663690 - L1PA8 LINE L1 -825 5347 5187 17022 110 10 3 chr12 109122765 109125335 -34661120 + L1PA8 LINE L1 2595 5181 -965 1032 289 68 0 chr12 109125340 109125651 -34660804 - L1MD1 LINE L1 -5592 948 617 904 283 93 7 chr12 109125657 109126302 -34660153 - L1MEc LINE L1 -3453 2953 2291 26 50 0 0 chr12 109126466 109126506 -34659949 + AT_rich Low_complexity Low_complexity 1 40 0 554 317 22 35 chr12 109127004 109127337 -34659118 - L1MEc LINE L1 -4579 2008 1685 326 120 10 210 chr12 109127337 109127437 -34659018 + MADE1 DNA Mariner 1 80 0 554 317 22 35 chr12 109127437 109127696 -34658759 - L1MEc LINE L1 -4902 1685 1424 42747 78 9 6 chr12 109127732 109133286 -34653169 + HERVL-A2 LTR ERVL 79 5654 0 3262 84 34 0 chr12 109133286 109133681 -34652774 + MLT2A2 LTR ERVL 1 414 -39 639 112 0 0 chr12 109133681 109133797 -34652658 + (TA)n Simple_repeat Simple_repeat 1 116 0 3262 84 34 0 chr12 109133797 109133839 -34652616 + MLT2A2 LTR ERVL 414 453 0 258 321 21 11 chr12 109133868 109134058 -34652397 - L1MEc LINE L1 -5082 1327 1136 1874 181 5 29 chr12 109134116 109134491 -34651964 - MER47A DNA MER2_type 0 366 1 360 164 0 0 chr12 109135282 109135349 -34651106 + (CA)n Simple_repeat Simple_repeat 1 67 0 218 290 9 65 chr12 109135444 109135551 -34650904 - L2 LINE L2 -168 3145 3045 2359 132 22 0 chr12 109136283 109136639 -34649816 + THE1B LTR MaLR 1 364 0 1605 108 0 0 chr12 109137418 109137641 -34648814 - L1PA13 LINE L1 -513 5650 5428 3611 94 4 2 chr12 109137642 109138142 -34648313 + L1PA13 LINE L1 5652 6152 -11 222 286 16 0 chr12 109138719 109138782 -34647673 - MIR SINE MIR -150 112 49 1758 165 10 10 chr12 109139613 109139904 -34646551 + AluJo SINE Alu 5 295 -17 265 229 21 73 chr12 109140732 109140828 -34645627 - L2 LINE L2 -915 2399 2309 1285 71 11 33 chr12 109140860 109141043 -34645412 + L1PA7 LINE L1 5968 6146 -8 656 286 35 20 chr12 109141541 109141740 -34644715 - MIR SINE MIR -21 241 40 503 232 32 10 chr12 109142188 109142359 -34644096 - MIR SINE MIR -17 245 23 233 329 12 12 chr12 109142855 109142940 -34643515 + MIR SINE MIR 64 148 -60 524 296 54 16 chr12 109142946 109143132 -34643323 - MIR SINE MIR -6 256 64 1040 248 46 23 chr12 109144388 109144691 -34641764 - MLT1I LTR MaLR -2 407 98 314 248 50 33 chr12 109145141 109145262 -34641193 + LTR67 LTR ERVL 435 557 0 871 282 58 0 chr12 109145559 109145800 -34640655 - MIR SINE MIR -2 260 6 1603 282 25 14 chr12 109146044 109146555 -34639900 - HAL1 LINE L1 -519 1988 1472 27 73 0 0 chr12 109146575 109146630 -34639825 + AT_rich Low_complexity Low_complexity 1 55 0 483 252 0 65 chr12 109147027 109147166 -34639289 + MER94 DNA DNA 5 134 0 184 231 0 0 chr12 109147305 109147344 -34639111 - L2 LINE L2 -1 3312 3274 976 34 0 0 chr12 109147390 109147508 -34638947 + L1PA5 LINE L1 6034 6151 -3 2213 112 3 0 chr12 109147888 109148184 -34638271 + AluSx SINE Alu 3 299 -13 379 273 97 28 chr12 109148634 109148810 -34637645 + MIR SINE MIR 63 250 -12 728 62 10 0 chr12 109149195 109149292 -34637163 - L1PA7 LINE L1 -2 6152 6055 22 0 0 0 chr12 109149624 109149646 -34636809 + AT_rich Low_complexity Low_complexity 1 22 0 411 226 38 9 chr12 109151864 109151996 -34634459 - L1PA16 LINE L1 0 6166 6057 409 224 24 73 chr12 109152397 109152562 -34633893 - MIR SINE MIR -4 258 102 364 226 36 0 chr12 109153048 109153132 -34633323 + L2 LINE L2 3186 3272 0 1696 260 74 21 chr12 109153365 109153625 -34632830 + MLT1F LTR MaLR 1 246 -296 2566 46 3 0 chr12 109153625 109153931 -34632524 + AluY SINE Alu 1 307 -4 1696 260 74 21 chr12 109153931 109154185 -34632270 + MLT1F LTR MaLR 246 542 0 381 22 0 0 chr12 109154412 109154458 -34631997 + (TG)n Simple_repeat Simple_repeat 2 47 0 285 269 117 14 chr12 109154498 109154667 -34631788 + MIR SINE MIR 33 225 -37 433 281 78 0 chr12 109155181 109155337 -34631118 + MIR SINE MIR 19 191 -71 1305 282 118 14 chr12 109159801 109160589 -34625866 + L2 LINE L2 2439 3310 -3 2194 220 54 45 chr12 109160734 109161312 -34625143 + MER119 DNA MER1_type 1 583 0 311 333 8 8 chr12 109161571 109161688 -34624767 - MIR3 SINE MIR -47 161 45 586 306 0 6 chr12 109163044 109163204 -34623251 + MIR SINE MIR 60 218 -44 227 167 0 0 chr12 109163717 109163753 -34622702 + MIR SINE MIR 215 250 -12 1429 238 32 4 chr12 109164860 109165335 -34621120 - L1M4 LINE L1 -2797 3349 2862 348 290 28 40 chr12 109165535 109165711 -34620744 + GA-rich Low_complexity Low_complexity 5 178 0 * 352 376 0 25 chr12 109165594 109165756 -34620699 + G-rich Low_complexity Low_complexity 4 161 0 466 285 40 9 chr12 109167896 109168077 -34618378 + MIR SINE MIR 2 191 -63 224 341 23 8 chr12 109168477 109168609 -34617846 + L2 LINE L2 2214 2347 -967 2095 242 60 23 chr12 109168609 109169122 -34617333 - MLT1H LTR MaLR 0 549 18 201 325 130 25 chr12 109169123 109169400 -34617055 + L2 LINE L2 2338 2643 -671 1226 119 10 10 chr12 109169408 109169602 -34616853 + MER107 DNA MER1_type 4 197 0 1464 234 147 63 chr12 109169602 109170188 -34616267 - MLT1E1 LTR MaLR -11 643 9 1288 64 0 0 chr12 109170737 109170894 -34615561 - AluSc SINE Alu -15 294 138 377 316 128 5 chr12 109170894 109171090 -34615365 - MIR SINE MIR -3 259 40 1974 109 25 4 chr12 109171358 109171665 -34614790 - AluSc SINE Alu 0 313 1 740 276 87 79 chr12 109171665 109172278 -34614177 + L1ME2 LINE L1 250 876 -5243 1486 154 48 39 chr12 109172278 109172589 -34613866 + L1PA16 LINE L1 5844 6157 -9 740 276 87 79 chr12 109172589 109172970 -34613485 + L1ME2 LINE L1 876 1252 -4867 272 312 65 12 chr12 109173131 109173301 -34613154 + HAL1 LINE L1 1591 1769 -738 234 140 35 35 chr12 109173304 109173361 -34613094 + A-rich Low_complexity Low_complexity 2 58 0 526 287 104 75 chr12 109173721 109175678 -34610777 + L1ME2 LINE L1 2116 4130 -1999 810 262 37 27 chr12 109175693 109176224 -34610231 + L1M4 LINE L1 4405 5339 -807 220 136 23 0 chr12 109176504 109176548 -34609907 + (TATAA)n Simple_repeat Simple_repeat 2 46 0 236 259 62 47 chr12 109176566 109176759 -34609696 + L1ME2 LINE L1 5076 5271 -858 289 125 0 0 chr12 109176934 109176982 -34609473 + Alu SINE Alu 252 299 -2 338 278 106 25 chr12 109177073 109177271 -34609184 + L1ME2 LINE L1 5718 5931 -216 2096 118 0 3 chr12 109179303 109179591 -34606864 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 109179592 109179613 -34606842 + AT_rich Low_complexity Low_complexity 1 21 0 876 166 29 40 chr12 109180455 109180630 -34605825 + MER20 DNA MER1_type 40 212 -7 234 143 20 41 chr12 109180960 109181009 -34605446 - U7 snRNA snRNA -1 62 15 713 210 68 23 chr12 109181307 109181483 -34604972 + MER5A DNA MER1_type 4 187 -2 201 274 35 71 chr12 109181483 109181563 -34604892 + MIR SINE MIR 61 136 -126 371 246 37 90 chr12 109182471 109182605 -34603850 + MIR SINE MIR 117 243 -19 2118 113 3 10 chr12 109183005 109183306 -34603149 + AluSq SINE Alu 1 299 -14 342 67 0 0 chr12 109183306 109183351 -34603104 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 308 87 19 chr12 109183549 109183653 -34602802 - L2 LINE L2 -4 3268 3158 404 296 26 0 chr12 109183685 109183800 -34602655 - MIR SINE MIR -98 164 47 2340 114 23 43 chr12 109183826 109184263 -34602192 - L1MA5A LINE L1 0 6297 5870 259 281 72 79 chr12 109184451 109184590 -34601865 - MIR SINE MIR -25 237 100 237 299 81 11 chr12 109184821 109184908 -34601547 + MIR SINE MIR 120 212 -50 241 325 115 19 chr12 109185065 109185216 -34601239 + L2 LINE L2 3097 3263 -4 237 83 0 0 chr12 109185216 109185252 -34601203 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 2330 49 87 0 chr12 109185443 109185729 -34600726 + AluY SINE Alu 1 311 0 324 294 40 24 chr12 109185866 109185992 -34600463 - MER94 DNA DNA -2 132 5 538 289 27 39 chr12 109186040 109186300 -34600155 + MIR SINE MIR 2 258 -4 401 305 0 91 chr12 109186519 109186673 -34599782 + L2 LINE L2 3133 3272 0 297 276 53 0 chr12 109187028 109187104 -34599351 - L2 LINE L2 -20 3293 3214 409 289 16 0 chr12 109187475 109187596 -34598859 + MIR SINE MIR 79 201 -61 263 193 12 0 chr12 109187607 109187690 -34598765 + (TTA)n Simple_repeat Simple_repeat 3 86 0 24 32 0 0 chr12 109187739 109187770 -34598685 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr12 109189314 109189341 -34597114 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1051 293 62 43 chr12 109189343 109190014 -34596441 - L2 LINE L2 -13 3259 2511 947 170 90 55 chr12 109190513 109190825 -34595630 + MER33 DNA MER1_type 2 324 0 270 0 0 0 chr12 109191081 109191111 -34595344 + (T)n Simple_repeat Simple_repeat 1 30 0 254 289 95 13 chr12 109193421 109193595 -34592860 + L1MC/D LINE L1 4067 4260 -1886 404 296 114 42 chr12 109193826 109194134 -34592321 + L1MC/D LINE L1 5318 5647 -2161 207 182 0 0 chr12 109194430 109194463 -34591992 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1054 209 9 23 chr12 109194496 109194711 -34591744 + MER20 DNA MER1_type 8 219 0 238 333 0 0 chr12 109195145 109195217 -34591238 + GA-rich Low_complexity Low_complexity 2 73 0 24 0 0 0 chr12 109195394 109195418 -34591037 + AT_rich Low_complexity Low_complexity 1 24 0 186 244 44 0 chr12 109195432 109195477 -34590978 - MIR SINE MIR -21 241 195 414 252 61 0 chr12 109195526 109195641 -34590814 + MIR SINE MIR 129 250 -12 459 361 34 10 chr12 109197061 109197266 -34589189 - MIR SINE MIR -35 227 18 903 307 62 3 chr12 109197444 109197783 -34588672 - LTR16A LTR ERVL 0 450 92 407 306 18 12 chr12 109198741 109198911 -34587544 + (TGG)n Simple_repeat Simple_repeat 3 173 0 11661 188 81 69 chr12 109199058 109199798 -34586657 + L1MA4A LINE L1 7 737 -6112 225 239 115 44 chr12 109199798 109199911 -34586544 + MER52A LTR ERV1 220 340 -1415 11661 188 81 69 chr12 109199911 109200610 -34585845 + L1MA4A LINE L1 737 1426 -5423 2491 131 5 5 chr12 109200610 109200985 -34585470 + THE1C LTR MaLR 1 375 0 11661 188 81 69 chr12 109200985 109202097 -34584358 + L1MA4A LINE L1 1426 2709 -4140 1680 189 3 10 chr12 109202097 109202410 -34584045 + AluJb SINE Alu 1 311 -1 11661 188 81 69 chr12 109202410 109202563 -34583892 + L1MA4A LINE L1 2709 2859 -3990 7791 161 27 12 chr12 109202558 109205099 -34581356 + L1MA4A LINE L1 4418 7001 -4 * 1978 146 130 18 chr12 109205145 109205530 -34580925 + MSTA LTR MaLR 1 428 0 325 264 118 9 chr12 109206039 109206149 -34580306 + MIR SINE MIR 19 140 -68 240 35 0 0 chr12 109206520 109206549 -34579906 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 237 33 0 0 chr12 109207755 109207785 -34578670 + (CA)n Simple_repeat Simple_repeat 2 31 0 2358 97 0 0 chr12 109208455 109208755 -34577700 - AluSq SINE Alu -13 300 1 549 239 36 126 chr12 109210722 109210969 -34575486 + MIR SINE MIR 23 247 -15 251 247 21 32 chr12 109211154 109211247 -34575208 + GA-rich Low_complexity Low_complexity 3 94 0 1130 244 46 97 chr12 109212366 109213017 -34573438 + L1ME4a LINE L1 5455 6072 -49 2002 142 3 0 chr12 109213124 109213544 -34572911 + AluSx SINE Alu 1 312 0 330 98 0 0 chr12 109214395 109214446 -34572009 + (T)n Simple_repeat Simple_repeat 1 51 0 513 98 37 0 chr12 109216273 109216355 -34570100 + MER53 DNA DNA 1 85 -104 363 88 25 125 chr12 109216294 109216374 -34570081 - MER53 DNA DNA -12 177 106 * 1889 138 67 28 chr12 109216408 109216769 -34569686 + THE1C LTR MaLR 1 375 0 210 305 94 31 chr12 109217110 109217238 -34569217 - L2 LINE L2 0 3272 3137 470 306 51 25 chr12 109217374 109217570 -34568885 - MIR SINE MIR -6 256 56 2085 91 43 4 chr12 109217876 109218152 -34568303 - AluSg SINE Alu -23 287 1 481 302 14 33 chr12 109218190 109218402 -34568053 + L1ME3A LINE L1 3525 3732 -2414 290 208 42 0 chr12 109218413 109218485 -34567970 - MER116 DNA Mariner 0 80 6 310 242 100 8 chr12 109218542 109218662 -34567793 + L1ME3A LINE L1 3847 3977 -2169 1749 240 52 30 chr12 109218684 109219279 -34567176 + MLT1E3 LTR MaLR 1 620 -4 1013 254 74 77 chr12 109219294 109219968 -34566487 + L1ME3A LINE L1 4013 4684 -1462 2182 285 30 33 chr12 109219993 109221284 -34565171 + L1ME3A LINE L1 4885 6168 -2 536 184 0 40 chr12 109222594 109222823 -34563632 + (TA)n Simple_repeat Simple_repeat 1 219 0 25 99 0 0 chr12 109222930 109223011 -34563444 + AT_rich Low_complexity Low_complexity 1 81 0 948 232 21 32 chr12 109223150 109223435 -34563020 + L1ME3A LINE L1 5886 6167 -3 6343 78 14 0 chr12 109223439 109224734 -34561721 - L1PA8A LINE L1 -13 6118 4814 340 311 146 0 chr12 109225026 109225177 -34561278 - MIR SINE MIR 0 262 90 2213 89 20 3 chr12 109225527 109225819 -34560636 + AluSg SINE Alu 1 297 -13 270 342 36 54 chr12 109226293 109226404 -34560051 - L2 LINE L2 -15 3257 3149 412 294 113 60 chr12 109227740 109227988 -34558467 + MIR SINE MIR 2 262 0 387 234 38 32 chr12 109228317 109228475 -34557980 - MER103 DNA DNA -4 162 4 297 0 0 0 chr12 109229435 109229468 -34556987 + (TG)n Simple_repeat Simple_repeat 1 33 0 746 213 27 21 chr12 109230638 109230826 -34555629 + MIR SINE MIR 36 224 -38 213 326 91 23 chr12 109230824 109230956 -34555499 - MIR SINE MIR -116 146 6 * 1903 186 85 12 chr12 109231905 109232330 -34554125 + MER101 LTR ERV1 6 461 -13 337 250 12 12 chr12 109232570 109232654 -34553801 - L2 LINE L2 -37 3276 3193 2352 69 7 0 chr12 109232688 109232993 -34553462 + AluSx SINE Alu 1 307 -5 222 37 0 0 chr12 109233005 109233032 -34553423 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 607 290 45 29 chr12 109233043 109233288 -34553167 + MIR SINE MIR 14 262 0 317 345 93 36 chr12 109233326 109233520 -34552935 - MIR SINE MIR -38 224 20 201 279 33 0 chr12 109233784 109233845 -34552610 + MIR SINE MIR 200 262 0 438 36 0 0 chr12 109234808 109234864 -34551591 + (TG)n Simple_repeat Simple_repeat 2 57 0 247 296 272 0 chr12 109235273 109235354 -34551101 - MIR3 SINE MIR -23 185 83 291 177 81 0 chr12 109235513 109235575 -34550880 - MIR SINE MIR -12 250 184 3983 72 0 0 chr12 109235583 109236134 -34550321 + L1PA7 LINE L1 5637 6154 0 781 226 88 32 chr12 109236134 109236351 -34550104 + LTR9 LTR ERV1 301 529 -83 645 305 6 0 chr12 109236363 109236540 -34549915 - MIR SINE MIR -82 180 3 595 289 330 12 chr12 109237015 109237661 -34548794 + L2 LINE L2 2031 2881 -433 221 328 0 0 chr12 109237784 109237848 -34548607 - MIR3 SINE MIR -18 190 127 565 255 139 50 chr12 109237947 109238318 -34548137 + L2 LINE L2 2871 3311 -2 205 296 86 33 chr12 109238558 109238710 -34547745 - L2 LINE L2 -1062 2252 2093 192 40 0 0 chr12 109239022 109239047 -34547408 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 282 267 95 19 chr12 109239405 109239510 -34546945 - MIR SINE MIR -67 195 83 191 286 52 13 chr12 109239985 109240062 -34546393 - MIR3 SINE MIR -39 169 90 290 377 41 8 chr12 109240154 109240276 -34546179 - MIR3 SINE MIR -39 169 44 571 298 85 0 chr12 109241017 109241205 -34545250 - MIR SINE MIR -12 250 47 807 215 41 73 chr12 109241313 109241526 -34544929 - MIR SINE MIR -29 233 31 546 279 44 58 chr12 109243202 109243428 -34543027 + MIR SINE MIR 25 247 -15 734 230 73 11 chr12 109243486 109243677 -34542778 - MIR SINE MIR -57 205 3 246 32 0 0 chr12 109244773 109244804 -34541651 + (TG)n Simple_repeat Simple_repeat 1 31 0 183 156 0 0 chr12 109245008 109245040 -34541415 + GA-rich Low_complexity Low_complexity 2 33 0 474 360 97 47 chr12 109246076 109246498 -34539957 - L2 LINE L2 -1 3271 2829 687 176 30 146 chr12 109247030 109247297 -34539158 + MER106A DNA MER1_type 1 236 0 261 292 52 42 chr12 109247449 109247545 -34538910 - MER5A DNA MER1_type -43 146 50 2531 80 3 0 chr12 109247545 109247856 -34538599 - AluSp SINE Alu -1 312 1 313 127 21 211 chr12 109248003 109248145 -34538310 + MLT2A2 LTR ERVL 339 453 0 456 272 39 88 chr12 109248227 109248635 -34537820 - L1M3e LINE L1 -6571 459 72 2590 133 0 9 chr12 109248671 109249123 -34537332 + HERVH LTR ERV1 2193 2640 -5073 410 264 65 62 chr12 109249357 109249607 -34536848 + L1M3e LINE L1 925 1178 -5128 1527 172 91 128 chr12 109249607 109250178 -34536277 - MLT2B3 LTR ERVL 0 554 5 410 264 65 62 chr12 109250178 109250268 -34536187 + L1M3e LINE L1 1178 1266 -5040 * 2053 288 38 21 chr12 109250235 109251111 -34535344 + L1MA10 LINE L1 1017 2022 -4360 1291 197 6 104 chr12 109251111 109251456 -34534999 + AluSp SINE Alu 1 311 -2 2053 288 38 21 chr12 109251456 109251824 -34534631 + L1MA10 LINE L1 2022 2382 -4000 8048 206 50 17 chr12 109251828 109251921 -34534534 + L1MA10 LINE L1 2408 2496 -3886 2175 105 0 3 chr12 109251921 109252207 -34534248 + AluSc SINE Alu 14 298 -11 8048 206 50 17 chr12 109252207 109254473 -34531982 + L1MA10 LINE L1 2496 4845 -1537 5314 139 18 10 chr12 109254478 109255740 -34530715 - L1PA15 LINE L1 -5 6160 4890 4062 255 23 9 chr12 109255742 109257000 -34529455 - L1PA13 LINE L1 -3121 3676 2402 3306 223 4 12 chr12 109257002 109257760 -34528695 - L1PA13 LINE L1 -4759 2028 1277 2645 278 38 18 chr12 109257842 109258627 -34527828 - L1PA13 LINE L1 -5986 801 1 4307 209 15 26 chr12 109258671 109260306 -34526149 + L1MA10 LINE L1 4901 6522 -48 8536 103 14 9 chr12 109260462 109261719 -34524736 - HSMAR1 DNA Mariner 0 1287 25 832 250 99 48 chr12 109264436 109264918 -34521537 + L1ME3 LINE L1 5111 5637 -533 2542 122 6 0 chr12 109264918 109265279 -34521176 - THE1B LTR MaLR -1 363 1 832 250 99 48 chr12 109265279 109265547 -34520908 + L1ME3 LINE L1 5637 5890 -280 250 310 80 32 chr12 109265848 109266035 -34520420 + LTR16A LTR ERVL 237 432 -18 278 173 91 109 chr12 109266053 109266163 -34520292 + L1ME3 LINE L1 5974 6081 -81 225 0 0 0 chr12 109266206 109266231 -34520224 + (CA)n Simple_repeat Simple_repeat 2 26 0 323 203 0 0 chr12 109266296 109266355 -34520100 - AluJ/FRAM SINE Alu -20 282 224 199 254 0 34 chr12 109266598 109266657 -34519798 - MIR SINE MIR -57 151 95 738 280 125 4 chr12 109266719 109266998 -34519457 + MLT1I LTR MaLR 97 409 0 247 283 139 34 chr12 109269588 109269941 -34516514 - HAL1 LINE L1 0 2507 2118 380 281 150 51 chr12 109270049 109270323 -34516132 - HAL1 LINE L1 -509 1998 1698 207 146 0 0 chr12 109270323 109270364 -34516091 + (T)n Simple_repeat Simple_repeat 1 41 0 818 157 43 0 chr12 109270531 109270671 -34515784 + FRAM SINE Alu 1 145 -31 291 267 217 27 chr12 109270675 109270896 -34515559 - HAL1 LINE L1 -601 1906 1644 571 203 85 7 chr12 109270951 109271104 -34515351 - MLT1B LTR MaLR -217 173 9 975 245 105 35 chr12 109271114 109271514 -34514941 + MLT1F1 LTR MaLR 140 567 0 528 245 128 0 chr12 109271523 109271780 -34514675 - L1M4 LINE L1 -897 5249 4960 936 253 72 51 chr12 109271894 109272408 -34514047 - L1MC5 LINE L1 -304 7657 7133 212 139 0 23 chr12 109272624 109272667 -34513788 + (TA)n Simple_repeat Simple_repeat 1 42 0 609 226 172 5 chr12 109272852 109273038 -34513417 - MIR SINE MIR -24 238 22 243 296 0 34 chr12 109273707 109273795 -34512660 - MIR SINE MIR 0 262 178 305 284 0 27 chr12 109274885 109275068 -34511387 + (TAA)n Simple_repeat Simple_repeat 3 180 0 2192 57 0 28 chr12 109276052 109276335 -34510120 - AluY SINE Alu -8 303 29 224 234 36 90 chr12 109276368 109276479 -34509976 - MIR SINE MIR -75 187 83 2099 137 0 0 chr12 109276521 109276828 -34509627 - AluSx SINE Alu -5 307 1 1801 150 10 46 chr12 109276927 109277233 -34509222 + AluJo SINE Alu 5 299 -13 2114 122 10 0 chr12 109277685 109277981 -34508474 + AluSp SINE Alu 1 299 -14 23 0 0 0 chr12 109278508 109278531 -34507924 + AT_rich Low_complexity Low_complexity 1 23 0 1614 78 14 0 chr12 109278610 109278827 -34507628 + L1PA7 LINE L1 313 532 -5929 460 48 0 0 chr12 109278826 109278888 -34507567 - L1P LINE L1 -3931 2215 2154 * 6663 65 17 0 chr12 109278888 109280088 -34506367 + L1PA7 LINE L1 5249 6463 -6 186 325 0 0 chr12 109281064 109281104 -34505351 - L2 LINE L2 -18 3254 3215 260 311 162 36 chr12 109281340 109281507 -34504948 + MIR3 SINE MIR 18 205 -3 3417 64 0 9 chr12 109281802 109282254 -34504201 - LTR7 LTR ERV1 -2 448 1 182 356 42 0 chr12 109282576 109282694 -34503761 + L2 LINE L2 1571 1693 -1621 2404 74 45 13 chr12 109282810 109283188 -34503267 - HERVH LTR ERV1 0 7713 7324 1305 139 19 0 chr12 109283188 109283404 -34503051 - HERVH LTR ERV1 -1894 5819 5600 4011 143 9 1 chr12 109283405 109284062 -34502393 - HERVH LTR ERV1 -2564 5149 4488 3198 108 6 0 chr12 109284064 109284555 -34501900 - HERVH LTR ERV1 -3720 3993 3500 793 152 21 0 chr12 109284553 109284698 -34501757 - HERVH LTR ERV1 -4426 3287 3140 * 18636 93 9 45 chr12 109284692 109287790 -34498665 - HERVH LTR ERV1 -4726 2987 1 3558 47 2 7 chr12 109287792 109288242 -34498213 - LTR7 LTR ERV1 -2 448 1 215 125 42 21 chr12 109288673 109288721 -34497734 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 252 172 17 17 chr12 109288971 109289029 -34497426 - MLT1L LTR MaLR -62 553 496 26 0 0 0 chr12 109289161 109289187 -34497268 + AT_rich Low_complexity Low_complexity 1 26 0 366 307 11 85 chr12 109289391 109289567 -34496888 - L1ME3A LINE L1 -232 5938 5776 970 240 18 9 chr12 109289784 109290013 -34496442 - MLT1E LTR MaLR -27 566 336 730 263 12 62 chr12 109290024 109290267 -34496188 - MLT1E LTR MaLR -362 231 1 408 264 109 15 chr12 109290418 109290812 -34495643 - L1M4 LINE L1 -2925 3221 2791 5796 179 14 14 chr12 109290821 109292113 -34494342 - L1MC1 LINE L1 -1 6332 5046 2333 76 0 10 chr12 109292113 109292415 -34494040 + AluY SINE Alu 1 299 -12 5796 179 14 14 chr12 109292415 109292552 -34493903 - L1MC1 LINE L1 -1287 5046 4910 735 146 124 17 chr12 109292584 109292762 -34493693 - L1MA4 LINE L1 -4 6296 6100 * 3767 227 48 29 chr12 109292754 109293881 -34492574 - L1MC1 LINE L1 -1236 4910 3763 21 36 0 0 chr12 109294710 109294738 -34491717 + AT_rich Low_complexity Low_complexity 1 28 0 347 259 0 0 chr12 109295118 109295199 -34491256 - L1MC1 LINE L1 -2303 3843 3763 449 304 14 0 chr12 109295305 109295443 -34491012 + MIR SINE MIR 105 244 -18 24 67 0 0 chr12 109295767 109295812 -34490643 + AT_rich Low_complexity Low_complexity 1 45 0 396 267 126 7 chr12 109297032 109297167 -34489288 + MIR SINE MIR 1 151 -111 1340 276 138 5 chr12 109297227 109297676 -34488779 - MLT1H LTR MaLR 0 549 41 704 254 37 26 chr12 109297849 109298038 -34488417 + MER58A DNA MER1_type 23 213 -11 397 214 313 15 chr12 109298065 109298196 -34488259 + MER5A DNA MER1_type 20 189 0 404 240 56 8 chr12 109298804 109298929 -34487526 + MIR SINE MIR 132 262 0 195 204 0 0 chr12 109298932 109298981 -34487474 + (CAT)n Simple_repeat Simple_repeat 2 50 0 311 280 20 30 chr12 109299801 109299901 -34486554 - MIR SINE MIR -1 261 163 316 277 185 23 chr12 109300021 109300151 -34486304 - MIR SINE MIR -84 178 28 436 350 36 0 chr12 109300469 109300609 -34485846 + L2 LINE L2 3127 3271 -1 537 349 11 5 chr12 109301176 109301365 -34485090 + MIR3 SINE MIR 6 195 -13 223 327 40 30 chr12 109301366 109301467 -34484988 - L2 LINE L2 -1 3271 3170 1682 180 3 20 chr12 109302714 109303009 -34483446 - AluJo SINE Alu -22 290 1 29 70 0 0 chr12 109303146 109303203 -34483252 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr12 109303261 109303289 -34483166 + AT_rich Low_complexity Low_complexity 1 28 0 804 231 6 6 chr12 109303562 109303735 -34482720 + MER5B DNA MER1_type 1 173 -5 268 260 13 13 chr12 109304941 109305018 -34481437 + MIR SINE MIR 74 150 -112 421 346 33 33 chr12 109305048 109305288 -34481167 + MIR SINE MIR 23 262 0 203 68 23 91 chr12 109306664 109306708 -34479747 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 666 294 19 27 chr12 109307525 109307787 -34478668 - MIR SINE MIR 0 262 3 444 277 158 12 chr12 109308363 109308541 -34477914 + MIR SINE MIR 33 234 -28 250 244 81 12 chr12 109308913 109308999 -34477456 - MIR SINE MIR -55 207 116 450 0 0 0 chr12 109309738 109309788 -34476667 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 576 290 99 40 chr12 109309867 109310191 -34476264 - MLT1K LTR MaLR -65 523 181 276 77 0 0 chr12 109310553 109310592 -34475863 + (TG)n Simple_repeat Simple_repeat 2 40 0 284 312 28 28 chr12 109310712 109310821 -34475634 - L2 LINE L2 0 3313 3205 920 305 76 9 chr12 109310821 109311165 -34475290 + MLT2E LTR ERVL 258 624 -4 195 42 0 0 chr12 109311631 109311655 -34474800 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1154 63 0 0 chr12 109311655 109311797 -34474658 - L1PA8 LINE L1 -24 6148 6007 4874 76 0 8 chr12 109311803 109312936 -34473519 - L1PA8 LINE L1 -349 5823 4702 1317 172 14 44 chr12 109313043 109313339 -34473116 - L1MA10 LINE L1 -31 6303 6017 1164 164 24 0 chr12 109313341 109313554 -34472901 + L1MA10 LINE L1 5794 6011 -178 2278 108 3 0 chr12 109314510 109314816 -34471639 + AluY SINE Alu 4 310 -1 928 204 230 3 chr12 109314859 109315168 -34471287 + Charlie1b DNA MER1_type 1 379 -144 493 231 26 26 chr12 109315168 109315285 -34471170 - L1MC3 LINE L1 -571 7214 7098 338 308 81 75 chr12 109316103 109316363 -34470092 - L1M4 LINE L1 -2033 4113 3856 1498 177 69 7 chr12 109316363 109316640 -34469815 - AluJo SINE Alu -18 294 1 338 308 81 75 chr12 109316640 109317149 -34469306 - L1M4 LINE L1 -2290 3856 3340 227 182 0 0 chr12 109317779 109317823 -34468632 + (CA)n Simple_repeat Simple_repeat 1 44 0 215 221 59 29 chr12 109318029 109318097 -34468358 - MIR SINE MIR -63 199 130 881 283 9 9 chr12 109318163 109318396 -34468059 + MIR SINE MIR 15 247 -15 299 130 19 0 chr12 109318669 109318723 -34467732 + CT-rich Low_complexity Low_complexity 1 55 0 250 320 97 0 chr12 109318838 109318941 -34467514 - MIR3 SINE MIR -39 169 57 253 341 30 43 chr12 109319563 109319727 -34466728 + MIR3 SINE MIR 16 177 -31 248 326 98 11 chr12 109320417 109320509 -34465946 - MIR3 SINE MIR -52 156 57 22 0 0 0 chr12 109320593 109320615 -34465840 + AT_rich Low_complexity Low_complexity 1 22 0 522 282 55 12 chr12 109320819 109321029 -34465426 - MIR SINE MIR -41 221 5 1701 26 0 0 chr12 109321668 109321886 -34464569 + L1PA3 LINE L1 5955 6172 0 243 0 0 0 chr12 109321909 109321936 -34464519 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 417 109 0 0 chr12 109322047 109322111 -34464344 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 284 288 0 0 chr12 109322324 109322397 -34464058 + L2 LINE L2 2715 2787 -527 322 290 94 56 chr12 109322545 109322831 -34463624 + L2 LINE L2 2967 3263 -9 580 233 39 48 chr12 109323041 109323247 -34463208 - L1M3e LINE L1 -6826 204 1 2075 191 27 25 chr12 109323690 109324112 -34462343 - MSTB LTR MaLR -2 407 2 618 168 14 35 chr12 109324172 109324315 -34462140 + L1PB1 LINE L1 6009 6148 -3 309 331 99 0 chr12 109324511 109324632 -34461823 - MLT1K LTR MaLR -437 151 19 679 288 30 60 chr12 109325164 109325431 -34461024 + MIR SINE MIR 1 259 -3 2271 129 6 11 chr12 109326682 109327039 -34459416 - THE1A LTR MaLR 0 355 1 370 114 29 0 chr12 109327082 109327152 -34459303 + GA-rich Low_complexity Low_complexity 3 74 0 371 295 13 83 chr12 109327252 109327408 -34459047 + LTR16C LTR ERVL 72 216 -275 1930 203 0 30 chr12 109327514 109327913 -34458542 - MLT1B LTR MaLR 0 390 4 2792 254 45 15 chr12 109328132 109329201 -34457254 + L1M4 LINE L1 2216 3316 -2830 2093 113 0 3 chr12 109329229 109329513 -34456942 + AluSc SINE Alu 1 283 -26 919 206 103 0 chr12 109329602 109329816 -34456639 + L1MD2 LINE L1 6027 6262 -97 268 241 28 0 chr12 109329867 109329956 -34456499 + L1MD1 LINE L1 6151 6358 -1 2041 119 0 19 chr12 109331314 109331624 -34454831 - AluSc SINE Alu 0 309 6 297 266 50 36 chr12 109331685 109331873 -34454582 + AluS SINE Alu 3 89 -213 182 273 23 80 chr12 109332780 109332868 -34453587 - L2 LINE L2 0 3313 3231 717 297 59 13 chr12 109332877 109333113 -34453342 - MIR SINE MIR -2 260 14 2068 135 0 3 chr12 109333157 109333453 -34453002 + AluSx SINE Alu 1 295 -17 355 317 52 39 chr12 109333532 109333762 -34452693 - MIR SINE MIR -15 247 15 235 227 0 0 chr12 109333822 109333866 -34452589 - L2 LINE L2 -223 3049 3006 2216 87 21 0 chr12 109334187 109334475 -34451980 - AluY SINE Alu -15 296 3 776 243 0 0 chr12 109334489 109334641 -34451814 - FRAM SINE Alu -14 152 1 447 64 64 0 chr12 109334684 109334762 -34451693 + GA-rich Low_complexity Low_complexity 4 86 0 385 303 65 43 chr12 109334762 109334947 -34451508 + MLT1K LTR MaLR 397 585 -3 2045 153 14 14 chr12 109335137 109335483 -34450972 + MER7A DNA MER2_type 2 345 -1 476 332 139 21 chr12 109336093 109336661 -34449794 + L2 LINE L2 2550 3272 0 347 302 0 0 chr12 109337430 109337516 -34448939 + L2 LINE L2 3228 3313 0 526 208 333 5 chr12 109337586 109337793 -34448662 + ORSL DNA AcHobo 1 275 0 21 36 0 0 chr12 109339353 109339381 -34447074 + AT_rich Low_complexity Low_complexity 1 28 0 298 388 54 0 chr12 109339494 109339623 -34446832 - L2 LINE L2 -11 3261 3126 191 59 0 59 chr12 109339689 109339723 -34446732 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 24 53 0 0 chr12 109340283 109340321 -34446134 + AT_rich Low_complexity Low_complexity 1 38 0 245 250 28 0 chr12 109340363 109340435 -34446020 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 240 0 0 chr12 109340495 109340545 -34445910 + L2 LINE L2 3256 3305 -8 247 252 168 9 chr12 109340555 109340662 -34445793 + L2 LINE L2 3182 3305 -8 258 278 60 45 chr12 109340672 109340805 -34445650 - L2 LINE L2 -220 3052 2918 360 0 0 0 chr12 109342023 109342063 -34444392 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 33 43 0 0 chr12 109342332 109342379 -34444076 + AT_rich Low_complexity Low_complexity 1 47 0 418 303 0 0 chr12 109342467 109342566 -34443889 + L2 LINE L2 3210 3308 -5 1269 210 38 17 chr12 109342586 109342876 -34443579 + MLT1A1 LTR MaLR 1 296 -69 215 276 17 0 chr12 109343085 109343143 -34443312 - L2 LINE L2 -12 3301 3243 431 310 138 73 chr12 109343525 109344016 -34442439 - L2 LINE L2 -2756 558 36 5259 58 3 0 chr12 109344313 109344972 -34441483 - L1PA6 LINE L1 -7 6147 5487 292 305 139 3 chr12 109345016 109345318 -34441137 - L1ME4a LINE L1 -8 6113 5771 321 309 0 21 chr12 109345350 109345447 -34441008 - L1ME4a LINE L1 -437 5684 5590 211 175 0 0 chr12 109345876 109345916 -34440539 + L2 LINE L2 3268 3307 -6 34 72 0 0 chr12 109345925 109345994 -34440461 + AT_rich Low_complexity Low_complexity 1 69 0 1690 161 16 35 chr12 109346120 109346430 -34440025 - AluJb SINE Alu -8 304 1 2164 128 0 0 chr12 109348455 109348751 -34437704 + AluSq SINE Alu 1 296 -17 795 292 142 8 chr12 109348910 109349424 -34437031 - L1ME4a LINE L1 -1306 4840 4258 30 77 0 0 chr12 109349451 109349516 -34436939 + AT_rich Low_complexity Low_complexity 1 65 0 448 339 75 28 chr12 109349791 109350361 -34436094 - HAL1b LINE L1 -684 664 68 2381 92 51 23 chr12 109350660 109351052 -34435403 - L1PA13 LINE L1 0 6163 5761 771 102 24 16 chr12 109351052 109351179 -34435276 + L1P4 LINE L1 5428 5555 -613 252 86 0 0 chr12 109351828 109351863 -34434592 + (TA)n Simple_repeat Simple_repeat 1 35 0 345 321 25 72 chr12 109351976 109352421 -34434034 + L1ME4a LINE L1 5627 6050 -71 1211 171 9 0 chr12 109353358 109353569 -34432886 + L1PB4 LINE L1 5935 6147 -9 492 281 105 0 chr12 109353737 109353890 -34432565 + MIR SINE MIR 27 195 -67 1768 206 32 61 chr12 109353932 109354393 -34432062 - MER41B LTR ERV1 -40 595 148 1192 162 18 9 chr12 109354465 109354687 -34431768 + L1MB8 LINE L1 5651 5874 -310 456 159 11 0 chr12 109354820 109354908 -34431547 + L1MB8 LINE L1 6088 6176 -2 533 267 73 0 chr12 109355775 109355940 -34430515 + MER69A DNA AcHobo 1 177 0 465 259 143 57 chr12 109356094 109356395 -34430060 - MER46C DNA MER2_type -4 334 8 306 257 81 0 chr12 109356470 109356544 -34429911 + L2 LINE L2 3193 3272 0 255 310 86 17 chr12 109356561 109356677 -34429778 + L2 LINE L2 3148 3271 -1 990 73 23 17 chr12 109356852 109357029 -34429426 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1130 35 7 0 chr12 109357137 109357281 -34429174 + L1PA4 LINE L1 6011 6155 0 267 79 0 0 chr12 109357359 109357397 -34429058 + (GA)n Simple_repeat Simple_repeat 2 39 0 1957 87 7 34 chr12 109358962 109359260 -34427195 - L1PA13 LINE L1 -83 6080 5791 316 296 63 21 chr12 109359620 109359762 -34426693 + MIR SINE MIR 91 238 -24 7367 35 5 3 chr12 109359991 109361501 -34424954 - L1PA5 LINE L1 -4 6150 4639 10189 34 1 2 chr12 109361502 109362732 -34423723 + L1PA5 LINE L1 3412 4640 -1506 488 273 102 0 chr12 109363350 109363478 -34422977 + MIR SINE MIR 122 262 0 28 0 0 0 chr12 109363478 109363506 -34422949 + AT_rich Low_complexity Low_complexity 1 28 0 195 291 29 68 chr12 109364007 109364110 -34422345 - MIR SINE MIR -75 187 89 448 223 50 50 chr12 109364518 109364639 -34421816 + L2 LINE L2 3193 3313 0 2124 79 10 31 chr12 109364641 109364997 -34421458 + AluY SINE Alu 1 350 0 254 345 108 31 chr12 109365020 109365243 -34421212 + MIR SINE MIR 7 246 -16 309 89 0 0 chr12 109365253 109365298 -34421157 + (TTA)n Simple_repeat Simple_repeat 2 46 0 453 0 0 0 chr12 109365578 109365631 -34420824 + AluY SINE Alu 242 294 -16 4600 30 9 2 chr12 109365631 109366188 -34420267 + L1PA4 LINE L1 5392 5952 -203 2028 52 4 8 chr12 109366302 109366551 -34419904 - AluY SINE Alu -63 248 1 241 305 34 51 chr12 109366603 109366895 -34419560 + L1M4 LINE L1 2273 2559 -3587 2174 121 0 3 chr12 109366924 109367230 -34419225 - AluSc SINE Alu -4 305 1 2453 109 32 5 chr12 109367389 109367766 -34418689 - L1PA10 LINE L1 -3 6165 5779 793 130 0 0 chr12 109367768 109367891 -34418564 - L1 LINE L1 -1315 4831 4709 584 102 0 41 chr12 109367890 109367988 -34418467 + L1P LINE L1 3640 3733 -2413 * 390 59 0 0 chr12 109367992 109368043 -34418412 - L1PA8 LINE L1 -12 6160 6110 2847 133 13 2 chr12 109368043 109368518 -34417937 + L1P LINE L1 4852 5331 -815 293 111 0 0 chr12 109368515 109368560 -34417895 - L1P LINE L1 -1863 4283 4239 * 434 100 38 25 chr12 109368561 109368641 -34417814 - MER50 LTR ERV1 -83 651 571 1557 125 8 0 chr12 109368641 109368897 -34417558 + L1P LINE L1 4278 4535 -1611 738 45 18 18 chr12 109470120 109470232 -34316223 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 337 280 0 21 chr12 109470233 109470326 -34316129 - MER117 DNA MER1_type -90 107 17 217 247 194 0 chr12 109470981 109471074 -34315381 - L2 LINE L2 -2 3311 3201 1776 156 20 7 chr12 109471273 109471574 -34314881 + AluSq SINE Alu 5 309 -4 1897 151 0 3 chr12 109471638 109471936 -34314519 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr12 109471942 109471963 -34314492 + (CA)n Simple_repeat Simple_repeat 2 22 0 194 250 0 24 chr12 109472146 109472230 -34314225 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 307 198 151 12 chr12 109472392 109472478 -34313977 - MIR SINE MIR -49 213 116 343 252 103 9 chr12 109473044 109473151 -34313304 + FLAM_A SINE Alu 1 117 -16 24 32 0 0 chr12 109473152 109473183 -34313272 + AT_rich Low_complexity Low_complexity 1 31 0 887 226 21 5 chr12 109473439 109473625 -34312830 - MER58A DNA MER1_type -35 189 1 325 341 67 23 chr12 109473638 109473937 -34312518 + L1M4 LINE L1 4828 5139 -1007 2049 136 0 0 chr12 109473982 109474277 -34312178 + AluSg SINE Alu 1 295 -15 334 238 38 9 chr12 109474369 109474474 -34311981 + L1M4 LINE L1 4247 4354 -1792 249 346 67 28 chr12 109475446 109475625 -34310830 - L2 LINE L2 -729 2585 2400 1340 253 0 3 chr12 109475800 109476101 -34310354 + AluJo SINE Alu 2 301 -11 490 266 119 101 chr12 109476106 109476352 -34310103 + L1M4 LINE L1 3110 3350 -2796 811 218 0 0 chr12 109476352 109476485 -34309970 - FLAM_A SINE Alu 0 133 1 490 266 119 101 chr12 109476485 109477000 -34309455 + L1M4 LINE L1 3350 3885 -2261 292 263 58 58 chr12 109477219 109477356 -34309099 + MIR SINE MIR 89 225 -37 1484 191 3 7 chr12 109478157 109478461 -34307994 - AluSp SINE Alu -6 307 5 1560 151 39 32 chr12 109478737 109479022 -34307433 + AluSx SINE Alu 1 287 -25 221 315 11 11 chr12 109479221 109479310 -34307145 - L2 LINE L2 -829 2485 2397 487 235 51 0 chr12 109479683 109479781 -34306674 + MER20 DNA MER1_type 1 103 -116 2123 109 7 7 chr12 109479919 109480221 -34306234 + AluSp SINE Alu 1 302 -11 207 0 0 0 chr12 109480221 109480244 -34306211 + (TA)n Simple_repeat Simple_repeat 1 23 0 1880 214 60 16 chr12 109480682 109480706 -34305749 - L1MB7 LINE L1 -10 6174 6152 1873 183 22 57 chr12 109480706 109481110 -34305345 + MLT1B LTR MaLR 1 390 0 1880 214 60 16 chr12 109481110 109481570 -34304885 - L1MB7 LINE L1 -32 6152 5669 325 262 83 0 chr12 109481721 109481805 -34304650 + FRAM SINE Alu 69 159 -7 248 262 0 16 chr12 109481805 109481866 -34304589 + (CA)n Simple_repeat Simple_repeat 1 60 0 4254 175 21 58 chr12 109481885 109482458 -34303997 - L1MA9 LINE L1 -67 6245 5723 1562 174 3 20 chr12 109482458 109482756 -34303699 + AluSx SINE Alu 5 297 -15 4254 175 21 58 chr12 109482756 109483176 -34303279 - L1MA9 LINE L1 -589 5723 5289 22 70 0 0 chr12 109483500 109483543 -34302912 + AT_rich Low_complexity Low_complexity 1 43 0 1045 242 129 28 chr12 109483812 109484176 -34302279 - LTR33 LTR ERVL -114 407 7 2078 125 0 0 chr12 109485715 109486004 -34300451 - AluSg SINE Alu -21 289 1 2244 104 3 3 chr12 109486675 109486973 -34299482 - AluSp SINE Alu -15 298 1 1454 170 0 0 chr12 109487481 109487704 -34298751 + AluSg/x SINE Alu 73 295 -15 1068 230 49 46 chr12 109487705 109488009 -34298446 + MSTD LTR MaLR 89 393 -3 2506 67 0 16 chr12 109488364 109488679 -34297776 - AluY SINE Alu 0 311 2 1442 211 0 14 chr12 109488788 109489097 -34297358 + AluJo SINE Alu 1 305 0 340 186 0 0 chr12 109489111 109489170 -34297285 + L1MB8 LINE L1 6116 6174 -4 1452 193 3 10 chr12 109489985 109490285 -34296170 + AluSp SINE Alu 1 298 -15 25 0 0 0 chr12 109491158 109491183 -34295272 + AT_rich Low_complexity Low_complexity 1 25 0 2212 104 3 0 chr12 109492013 109492300 -34294155 - AluSx SINE Alu -20 292 5 748 190 0 0 chr12 109493109 109493225 -34293230 - AluJb SINE Alu -194 118 3 21 0 0 0 chr12 109493234 109493255 -34293200 + AT_rich Low_complexity Low_complexity 1 21 0 530 198 35 112 chr12 109493260 109493307 -34293148 - L1MA9 LINE L1 -38 6274 6225 1531 98 142 105 chr12 109493307 109493632 -34292823 + MER1B DNA MER1_type 1 337 0 530 198 35 112 chr12 109493632 109493781 -34292674 - L1MA9 LINE L1 -87 6225 6093 911 176 36 0 chr12 109493848 109494013 -34292442 + FRAM SINE Alu 1 167 -9 586 281 39 54 chr12 109494078 109494338 -34292117 + MIR SINE MIR 2 257 -5 287 240 22 31 chr12 109495613 109495714 -34290741 - L1MC/D LINE L1 -568 5595 5506 452 302 113 55 chr12 109495762 109496232 -34290223 - MARNA DNA Mariner -16 570 74 2138 139 0 3 chr12 109496620 109496922 -34289533 - AluSx SINE Alu -11 301 1 198 0 0 0 chr12 109497258 109497280 -34289175 + (A)n Simple_repeat Simple_repeat 1 22 0 201 277 30 89 chr12 109497296 109497397 -34289058 + MIR SINE MIR 161 255 -7 260 219 146 37 chr12 109497401 109497483 -34288972 + MER46C DNA MER2_type 11 101 -237 383 214 12 12 chr12 109497495 109497579 -34288876 + MER46C DNA MER2_type 250 333 -5 215 265 0 0 chr12 109497598 109497647 -34288808 - MIR SINE MIR -19 243 195 180 0 0 0 chr12 109497909 109497929 -34288526 + (TC)n Simple_repeat Simple_repeat 2 21 0 2392 262 113 19 chr12 109498066 109499243 -34287212 + HAL1 LINE L1 807 2177 -330 326 165 0 106 chr12 109499337 109499393 -34287062 + Tigger2 DNA MER2_type 2 48 -2670 2320 96 0 13 chr12 109499393 109499696 -34286759 - AluY SINE Alu -12 299 1 326 165 0 106 chr12 109499696 109499717 -34286738 + Tigger2 DNA MER2_type 48 70 -2648 292 190 103 0 chr12 109499717 109499775 -34286680 - MER2 DNA MER2_type 0 345 282 * 823 211 29 11 chr12 109499751 109499926 -34286529 - MER8 DNA MER2_type -61 178 1 390 261 23 54 chr12 109499931 109500061 -34286394 + HAL1 LINE L1 2344 2469 -38 299 350 11 50 chr12 109500618 109500798 -34285657 - MER5B DNA MER1_type -4 174 2 28 61 0 0 chr12 109500988 109501037 -34285418 + AT_rich Low_complexity Low_complexity 1 49 0 354 98 0 0 chr12 109501421 109501472 -34284983 + (TA)n Simple_repeat Simple_repeat 2 52 0 375 23 0 0 chr12 109501472 109501516 -34284939 + (CA)n Simple_repeat Simple_repeat 2 45 0 2174 121 7 0 chr12 109501557 109501854 -34284601 - AluSx SINE Alu -13 299 1 230 250 0 25 chr12 109503125 109503234 -34283221 - L2 LINE L2 0 3272 3125 762 316 110 54 chr12 109503300 109503808 -34282647 - L2 LINE L2 -22 3250 2719 2592 99 17 8 chr12 109503951 109504303 -34282152 - THE1A LTR MaLR 0 355 1 12666 82 8 4 chr12 109504303 109505877 -34280578 - THE1A-int LTR MaLR 0 1580 1 551 46 0 0 chr12 109505877 109505942 -34280513 - THE1A LTR MaLR 0 355 291 2644 189 58 8 chr12 109506044 109506579 -34279876 + Tigger6a DNA MER2_type 118 679 -404 1805 165 53 0 chr12 109506590 109506875 -34279580 + AluJb SINE Alu 1 300 -12 1342 178 16 0 chr12 109506875 109507122 -34279333 + Tigger6a DNA MER2_type 833 1083 0 4184 131 38 21 chr12 109507142 109507854 -34278601 - L1M3f LINE L1 -4595 733 10 639 250 95 6 chr12 109507855 109508023 -34278432 - MIR SINE MIR -64 198 16 460 158 13 0 chr12 109508185 109508261 -34278194 - Tigger7 DNA MER2_type -8 2479 2403 1312 196 9 9 chr12 109508265 109508495 -34277960 - Tigger7 DNA MER2_type -475 258 29 1286 224 62 6 chr12 109508702 109509017 -34277438 - MLT1J LTR MaLR -125 325 22 523 353 96 20 chr12 109509162 109509661 -34276794 + L2 LINE L2 1647 2183 -1131 1733 206 106 28 chr12 109509805 109509981 -34276474 + MLT1C LTR MaLR 1 162 -305 1956 175 0 0 chr12 109509981 109510284 -34276171 + AluJb SINE Alu 1 303 -9 1733 206 106 28 chr12 109510284 109510540 -34275915 + MLT1C LTR MaLR 162 467 0 774 259 16 26 chr12 109512287 109512480 -34273975 - MIR SINE MIR -71 191 1 2063 151 0 59 chr12 109512540 109512898 -34273557 + MER1B DNA MER1_type 1 337 0 2447 84 0 3 chr12 109513024 109513332 -34273123 + AluSx SINE Alu 1 307 -5 2265 82 0 13 chr12 109513810 109514113 -34272342 + AluSq SINE Alu 2 300 -13 293 211 0 0 chr12 109514431 109514483 -34271972 + AluSc SINE Alu 197 248 -51 904 239 5 50 chr12 109514483 109514705 -34271750 + AluJo SINE Alu 85 296 -16 500 319 151 6 chr12 109517675 109517870 -34268585 - L1MC4a LINE L1 -1916 5892 5727 513 71 0 0 chr12 109517870 109517940 -34268515 + (TA)n Simple_repeat Simple_repeat 1 70 0 500 319 151 6 chr12 109517940 109518082 -34268373 - L1MC4a LINE L1 -2081 5727 5506 298 291 60 86 chr12 109518130 109518398 -34268057 - MARNA DNA Mariner -16 570 310 518 116 0 0 chr12 109518714 109518783 -34267672 - AluS SINE Alu -239 70 2 271 215 120 47 chr12 109518804 109518995 -34267460 - L1M4 LINE L1 -2734 3412 3208 2080 112 7 3 chr12 109519849 109520144 -34266311 + AluSx SINE Alu 1 296 -16 1580 132 21 28 chr12 109521984 109522271 -34264184 - AluSx SINE Alu -27 285 1 227 260 143 0 chr12 109522437 109522514 -34263941 + L1ME4a LINE L1 5588 5675 -446 829 263 109 8 chr12 109522519 109522877 -34263578 + L1ME4a LINE L1 5698 6091 -30 1315 277 97 5 chr12 109523447 109523870 -34262585 + MLT1J LTR MaLR 1 462 -49 14396 48 7 0 chr12 109523990 109526444 -34260011 + L1PA5 LINE L1 3706 6164 0 563 221 46 49 chr12 109526527 109526840 -34259615 + LTR45B LTR ERV1 293 518 -7 321 141 13 26 chr12 109527279 109527357 -34259098 + CT-rich Low_complexity Low_complexity 1 77 0 321 224 64 51 chr12 109527545 109527701 -34258754 + L1ME4a LINE L1 5810 5967 -154 2620 96 14 8 chr12 109527762 109528115 -34258340 + THE1A LTR MaLR 1 355 0 6298 133 6 4 chr12 109528115 109529066 -34257389 + THE1A-int LTR MaLR 1 953 -627 354 307 142 9 chr12 109530348 109530566 -34255889 + MIR SINE MIR 14 260 -2 680 283 43 5 chr12 109530872 109531056 -34255399 + MIR SINE MIR 18 208 -54 285 215 31 0 chr12 109531063 109531128 -34255327 + MIR SINE MIR 178 244 -18 1992 263 150 27 chr12 109531233 109532362 -34254093 - L2 LINE L2 -3 3310 2039 25 0 0 0 chr12 109532987 109533012 -34253443 + AT_rich Low_complexity Low_complexity 1 25 0 276 188 104 10 chr12 109533216 109533312 -34253143 + L1MC4 LINE L1 7938 8042 0 2240 114 3 0 chr12 109533605 109533904 -34252551 - AluSx SINE Alu -12 300 1 254 300 157 7 chr12 109533993 109534133 -34252322 + MIR SINE MIR 85 245 -17 1424 171 22 29 chr12 109534310 109534585 -34251870 - AluJo SINE Alu -34 278 6 1626 181 35 0 chr12 109534629 109534911 -34251544 + AluJb SINE Alu 1 292 -20 712 253 24 0 chr12 109535214 109535384 -34251071 + MER5A DNA MER1_type 16 189 0 1718 150 58 3 chr12 109535813 109535937 -34250518 + AluJb SINE Alu 1 117 -195 390 21 0 0 chr12 109535937 109535984 -34250471 + (CA)n Simple_repeat Simple_repeat 2 48 0 1718 150 58 3 chr12 109535984 109536153 -34250302 + AluJb SINE Alu 117 310 -2 1840 136 3 61 chr12 109536183 109536267 -34250188 - L1 LINE L1 -1847 4299 4212 1801 133 46 4 chr12 109536267 109536530 -34249925 + AluSx SINE Alu 1 274 -38 180 0 0 0 chr12 109536538 109536558 -34249897 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1840 136 3 61 chr12 109536558 109536809 -34249646 - L1 LINE L1 -1941 4205 3975 2094 140 16 0 chr12 109536902 109537254 -34249201 + AluSx SINE Alu 1 538 -36 1319 67 6 0 chr12 109537254 109537433 -34249022 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2094 140 16 0 chr12 109537433 109537471 -34248984 + AluSx SINE Alu 538 574 0 317 280 68 8 chr12 109537577 109537695 -34248760 - MER113 DNA MER1_type? 0 521 397 232 278 29 73 chr12 109537708 109537883 -34248572 - MER113 DNA MER1_type? -260 261 99 2255 108 0 0 chr12 109537883 109538170 -34248285 - AluSq SINE Alu -26 287 1 232 278 29 73 chr12 109538170 109538239 -34248216 - MER113 DNA MER1_type? -422 99 28 436 296 76 23 chr12 109538292 109538464 -34247991 + MIR SINE MIR 20 200 -62 1996 149 0 10 chr12 109538511 109538819 -34247636 - AluJb SINE Alu -7 305 1 22 0 0 0 chr12 109538821 109538843 -34247612 + AT_rich Low_complexity Low_complexity 1 22 0 1156 91 0 0 chr12 109539139 109539282 -34247173 + AluSq/x SINE Alu 1 143 -169 791 99 0 41 chr12 109539282 109539403 -34247052 - MER53 DNA DNA -73 116 1 437 189 71 55 chr12 109539471 109539598 -34246857 - MER69 DNA AcHobo 0 2526 2398 1251 82 13 0 chr12 109539813 109539971 -34246484 - L1PA10 LINE L1 -4 6164 6005 402 74 0 0 chr12 109540312 109540366 -34246089 + (TG)n Simple_repeat Simple_repeat 2 55 0 1494 33 0 0 chr12 109540995 109541066 -34245389 + (TTC)n Simple_repeat Simple_repeat 1 251 0 1494 33 0 0 chr12 109541066 109541246 -34245209 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1544 126 88 39 chr12 109541314 109541599 -34244856 - AluJo SINE Alu -11 301 3 1212 279 59 11 chr12 109542161 109542682 -34243773 + L2 LINE L2 2761 3311 -2 1901 169 0 7 chr12 109542894 109543196 -34243259 + AluSx SINE Alu 1 300 -12 1471 166 0 0 chr12 109543688 109543941 -34242514 + AluJb SINE Alu 1 253 -59 378 0 0 0 chr12 109544361 109544403 -34242052 + (CA)n Simple_repeat Simple_repeat 2 43 0 1841 142 0 68 chr12 109544678 109544863 -34241592 - AluJo SINE Alu -9 303 148 2282 103 0 0 chr12 109544863 109545154 -34241301 - AluSg SINE Alu -19 291 1 1841 142 0 68 chr12 109545154 109545293 -34241162 - AluJo SINE Alu -164 148 1 342 276 151 20 chr12 109546690 109546889 -34239566 + L1ME1 LINE L1 5288 5512 -652 * 350 248 38 29 chr12 109546887 109546992 -34239463 + L1ME3A LINE L1 6065 6170 0 635 295 83 55 chr12 109547491 109548076 -34238379 - L1MC4a LINE L1 -384 5786 5415 204 0 83 0 chr12 109548129 109548165 -34238290 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1515 154 0 0 chr12 109548168 109548388 -34238067 - AluSx SINE Alu -30 282 63 1401 177 67 18 chr12 109548423 109548705 -34237750 - AluJo SINE Alu -16 296 1 437 226 129 40 chr12 109548708 109548956 -34237499 - L1MC4a LINE L1 -751 5395 5126 1627 195 3 13 chr12 109549108 109549416 -34237039 + AluJo SINE Alu 1 305 -7 384 155 0 0 chr12 109549419 109549490 -34236965 + GA-rich Low_complexity Low_complexity 2 72 0 834 166 83 0 chr12 109549596 109549741 -34236714 - AluSx SINE Alu -155 157 1 471 271 26 2 chr12 109549741 109549881 -34236574 + L1ME1 LINE L1 5578 5689 -477 1508 214 96 46 chr12 109549903 109550448 -34236007 - LTR24B LTR ERV1 -7 569 1 1599 212 74 19 chr12 109550448 109550868 -34235587 + L1ME1 LINE L1 5720 6162 -4 794 159 86 0 chr12 109550728 109550879 -34235576 + L1MA10 LINE L1 6169 6332 -2 1353 88 0 0 chr12 109550942 109551112 -34235343 - AluSx SINE Alu -16 296 127 435 126 57 0 chr12 109551115 109551274 -34235181 + (TA)n Simple_repeat Simple_repeat 1 168 0 851 92 0 85 chr12 109551274 109551415 -34235040 - AluSx SINE Alu -183 129 1 454 134 0 0 chr12 109552571 109552638 -34233817 + MSTB1 LTR MaLR 353 419 -13 476 322 69 62 chr12 109552649 109553025 -34233430 + L2 LINE L2 2664 3048 -265 389 312 8 0 chr12 109553199 109553324 -34233131 - L2 LINE L2 -2 3311 3186 718 266 37 16 chr12 109553325 109553569 -34232886 + L1ME3A LINE L1 5692 5940 -230 1961 81 77 0 chr12 109555668 109555927 -34230528 - AluSq SINE Alu -21 292 14 257 328 129 25 chr12 109556946 109557147 -34229308 - L2 LINE L2 -1275 2039 1818 41 90 0 0 chr12 109557403 109557514 -34228941 + AT_rich Low_complexity Low_complexity 1 111 0 22 0 0 0 chr12 109557818 109557840 -34228615 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 109560202 109560224 -34226231 + AT_rich Low_complexity Low_complexity 1 22 0 398 275 18 0 chr12 109560847 109560956 -34225499 - MIR3 SINE MIR -6 202 92 1793 68 0 0 chr12 109563101 109563320 -34223135 + L1PA13 LINE L1 5942 6160 -3 40 59 0 0 chr12 109563708 109563776 -34222679 + AT_rich Low_complexity Low_complexity 1 68 0 2267 91 7 3 chr12 109564135 109564433 -34222022 - AluSx SINE Alu -13 299 1 431 276 30 45 chr12 109564611 109564745 -34221710 - MIR SINE MIR -111 151 20 21 0 0 0 chr12 109564936 109564957 -34221498 + AT_rich Low_complexity Low_complexity 1 21 0 1776 150 25 0 chr12 109565050 109565336 -34221119 - AluJo SINE Alu -19 293 1 31741 63 7 1 chr12 109565661 109570498 -34215957 + L1PA6 LINE L1 1275 6140 -14 4914 99 93 33 chr12 109570598 109571201 -34215254 + Tigger3b DNA MER2_type 316 985 -2043 2050 108 3 14 chr12 109571201 109571523 -34214932 - AluSx SINE Alu 0 319 1 4914 99 93 33 chr12 109571523 109571756 -34214699 + Tigger3b DNA MER2_type 985 1203 -28 2045 240 152 22 chr12 109571762 109572122 -34214333 - L1M LINE L1 -772 5394 5082 2583 172 65 7 chr12 109572122 109572581 -34213874 + MER66B LTR ERV1 1 486 0 2045 240 152 22 chr12 109572581 109572738 -34213717 - L1M LINE L1 -1084 5082 4947 2150 126 0 7 chr12 109572738 109573039 -34213416 - AluSx SINE Alu -13 299 1 2045 240 152 22 chr12 109573039 109573525 -34212930 - L1M LINE L1 -1219 4947 4226 1852 87 126 11 chr12 109573803 109574080 -34212375 - AluSg1 SINE Alu 0 309 1 273 216 0 0 chr12 109574413 109574464 -34211991 - L2 LINE L2 -1 3312 3262 441 292 0 35 chr12 109574579 109574723 -34211732 + MLT1I LTR MaLR 251 389 -20 263 197 0 66 chr12 109575079 109575140 -34211315 - MIR SINE MIR -61 147 91 2314 100 3 0 chr12 109577119 109577419 -34209036 - AluSx SINE Alu -11 301 1 2020 135 20 3 chr12 109577483 109577787 -34208668 - AluSq SINE Alu -4 309 1 1151 100 7 0 chr12 109578509 109578659 -34207796 + AluSq/x SINE Alu 1 151 -161 833 241 76 34 chr12 109578765 109579001 -34207454 - MIR SINE MIR -15 247 2 735 326 181 19 chr12 109579005 109579541 -34206914 + L3 LINE CR1 472 1094 -483 1831 166 7 7 chr12 109579858 109580153 -34206302 + AluJo SINE Alu 1 295 -17 1211 119 0 31 chr12 109580247 109580441 -34206014 + AluJo SINE Alu 123 310 -2 1452 210 74 7 chr12 109580529 109580839 -34205616 - MER2 DNA MER2_type -1 344 14 2198 104 19 10 chr12 109580943 109581250 -34205205 + AluSg SINE Alu 1 310 0 956 174 26 26 chr12 109581509 109581820 -34204635 + L1MA9 LINE L1 5885 6291 -21 31 44 0 0 chr12 109581820 109581865 -34204590 + AT_rich Low_complexity Low_complexity 1 45 0 2481 68 0 0 chr12 109581903 109582195 -34204260 - AluY SINE Alu -19 292 1 324 198 276 9 chr12 109582224 109582340 -34204115 - MIR SINE MIR 0 262 116 615 170 104 0 chr12 109582906 109583012 -34203443 + FLAM_A SINE Alu 1 117 -16 25 31 0 0 chr12 109583013 109583045 -34203410 + AT_rich Low_complexity Low_complexity 1 32 0 437 267 36 48 chr12 109583316 109583481 -34202974 + MIR SINE MIR 50 212 -50 747 133 17 0 chr12 109583582 109583702 -34202753 + Charlie5 DNA MER1_type 6 127 -2485 * 809 158 9 136 chr12 109583699 109583790 -34202665 + Charlie5 DNA MER1_type 2234 2280 -344 539 130 16 73 chr12 109583790 109583913 -34202542 - L1MA4 LINE L1 -4 6296 6181 809 158 9 136 chr12 109583913 109584049 -34202406 + Charlie5 DNA MER1_type 2280 2432 -192 1769 93 96 4 chr12 109584051 109584321 -34202134 + L1MA5A LINE L1 5987 6281 -16 770 125 50 19 chr12 109584351 109584511 -34201944 + Charlie5 DNA MER1_type 2421 2585 -27 1094 158 0 18 chr12 109584511 109584682 -34201773 + FRAM SINE Alu 1 166 -10 2387 80 3 0 chr12 109584684 109584985 -34201470 + AluSx SINE Alu 1 302 -10 1175 103 6 6 chr12 109586666 109586831 -34199624 - AluSx SINE Alu -147 165 1 2047 131 7 0 chr12 109588366 109588656 -34197799 - AluJb SINE Alu -18 294 3 237 268 216 0 chr12 109588656 109588753 -34197702 - MIR SINE MIR -73 189 72 1719 196 3 16 chr12 109589099 109589415 -34197040 - AluJb SINE Alu 0 312 1 2423 88 3 0 chr12 109589608 109589916 -34196539 + AluSp SINE Alu 1 309 -4 567 267 102 29 chr12 109590715 109590921 -34195534 - MIR SINE MIR -37 225 5 23 68 0 0 chr12 109591622 109591666 -34194789 + AT_rich Low_complexity Low_complexity 1 44 0 2327 113 3 3 chr12 109591739 109592050 -34194405 + AluSx SINE Alu 1 311 -1 1297 185 24 5 chr12 109592205 109592416 -34194039 - MER20 DNA MER1_type -4 215 1 350 349 65 77 chr12 109592762 109593053 -34193402 + L2 LINE L2 2370 2663 -609 1914 127 36 26 chr12 109593053 109593361 -34193094 - AluSx SINE Alu -1 311 1 350 349 65 77 chr12 109593361 109593979 -34192476 + L2 LINE L2 2663 3258 -14 252 0 0 0 chr12 109594707 109594735 -34191720 + (TG)n Simple_repeat Simple_repeat 1 28 0 1564 172 11 21 chr12 109594737 109595022 -34191433 - AluJb SINE Alu -30 282 1 339 26 0 0 chr12 109595089 109595128 -34191327 + MSTD LTR MaLR 1 39 -357 3396 172 26 3 chr12 109595228 109595832 -34190623 - L1P LINE L1 -5518 628 11 342 80 0 0 chr12 109595971 109596021 -34190434 - L1MA9 LINE L1 0 6312 6263 766 247 47 0 chr12 109596022 109596172 -34190283 + FRAM SINE Alu 1 156 -20 306 194 0 0 chr12 109596172 109596234 -34190221 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5544 130 22 48 chr12 109596234 109596823 -34189632 - L1MA9 LINE L1 -40 6272 5718 2220 106 0 17 chr12 109596823 109597125 -34189330 + AluSx SINE Alu 1 297 -15 5544 130 22 48 chr12 109597125 109597545 -34188910 - L1MA9 LINE L1 -594 5718 5289 22 70 0 0 chr12 109597869 109597912 -34188543 + AT_rich Low_complexity Low_complexity 1 43 0 3884 151 28 82 chr12 109599274 109600129 -34186326 - L1MA9 LINE L1 -812 5334 4526 273 297 148 4 chr12 109600156 109600291 -34186164 - MIR3 SINE MIR -5 203 52 259 184 13 105 chr12 109600289 109600365 -34186090 - MIR SINE MIR -28 234 166 * 763 235 179 50 chr12 109600385 109600706 -34185749 - L1MC4 LINE L1 0 8042 7764 2354 90 0 0 chr12 109600706 109600995 -34185460 - AluSc SINE Alu -20 289 1 763 235 179 50 chr12 109600995 109601371 -34185084 - L1MC4 LINE L1 -278 7764 7168 277 348 78 21 chr12 109601371 109601512 -34184943 - MIR SINE MIR -112 150 2 234 91 0 0 chr12 109601694 109601727 -34184728 + (CA)n Simple_repeat Simple_repeat 2 34 0 763 270 73 4 chr12 109602159 109602392 -34184063 + MIR SINE MIR 14 262 0 267 282 17 17 chr12 109602452 109602569 -34183886 - MLT1K LTR MaLR -2 586 470 2002 153 0 0 chr12 109603709 109604009 -34182446 - AluSx SINE Alu -12 300 1 846 230 53 0 chr12 109604271 109604497 -34181958 + L1M4 LINE L1 4894 5131 -1015 509 167 0 0 chr12 109604498 109604576 -34181879 + AluS SINE Alu 1 78 -235 882 192 0 0 chr12 109604676 109604846 -34181609 + FRAM SINE Alu 1 169 0 1042 164 6 23 chr12 109604874 109605051 -34181404 - FAM SINE Alu 0 175 2 2426 116 72 12 chr12 109605128 109605486 -34180969 + MSTA LTR MaLR 1 387 -41 2377 89 0 0 chr12 109605486 109605788 -34180667 - AluY SINE Alu -9 302 1 2426 116 72 12 chr12 109605788 109605833 -34180622 + MSTA LTR MaLR 387 428 0 195 184 0 0 chr12 109607656 109607694 -34178761 + (TA)n Simple_repeat Simple_repeat 1 38 0 253 264 22 0 chr12 109607841 109607932 -34178523 - L1ME4a LINE L1 -182 5939 5847 21 0 0 0 chr12 109608195 109608216 -34178239 + AT_rich Low_complexity Low_complexity 1 21 0 412 167 12 0 chr12 109608216 109608300 -34178155 + L1MB4 LINE L1 6096 6180 0 25 0 0 0 chr12 109608623 109608648 -34177807 + AT_rich Low_complexity Low_complexity 1 25 0 222 316 133 10 chr12 109609984 109610082 -34176373 - L2 LINE L2 0 3272 3163 405 244 12 0 chr12 109610151 109610233 -34176222 - L2 LINE L2 -36 3277 3195 * 698 355 56 17 chr12 109610229 109610587 -34175868 + L2 LINE L2 2214 2585 -729 2244 104 0 3 chr12 109611725 109612014 -34174441 - AluSq SINE Alu -25 288 1 1784 167 27 0 chr12 109612025 109612319 -34174136 - AluJb SINE Alu -10 302 1 358 350 44 39 chr12 109612612 109612818 -34173637 - MIR SINE MIR -32 230 24 368 306 41 59 chr12 109612897 109613067 -34173388 + HAL1 LINE L1 1 167 -2340 367 295 51 26 chr12 109613375 109613531 -34172924 + HAL1 LINE L1 516 675 -1832 23 0 0 0 chr12 109613690 109613713 -34172742 + AT_rich Low_complexity Low_complexity 1 23 0 2045 98 0 51 chr12 109613815 109613962 -34172493 + AluSx SINE Alu 1 126 -179 2263 105 0 0 chr12 109613962 109614257 -34172198 + AluSx SINE Alu 1 295 -17 2045 98 0 51 chr12 109614257 109614429 -34172026 + AluSx SINE Alu 126 305 0 297 279 92 108 chr12 109614495 109614735 -34171720 - L2 LINE L2 -1 3271 3036 276 278 82 31 chr12 109614774 109614871 -34171584 + L2 LINE L2 3180 3281 -32 374 244 136 66 chr12 109614954 109615167 -34171288 + MLT1J LTR MaLR 91 318 -193 1382 141 13 9 chr12 109615501 109615728 -34170727 + MER30 DNA MER1_type 3 230 0 2247 240 224 24 chr12 109615894 109616298 -34170157 + L2 LINE L2 1983 2305 -1008 2155 130 0 0 chr12 109616298 109616597 -34169858 - AluSx SINE Alu -13 299 1 2247 240 224 24 chr12 109616597 109617302 -34169153 + L2 LINE L2 2305 3313 0 318 283 131 7 chr12 109617708 109617853 -34168602 - L1MC4 LINE L1 -68 7974 7812 209 211 211 22 chr12 109617861 109617951 -34168504 + L2 LINE L2 3164 3270 -2 389 267 80 27 chr12 109618606 109618700 -34167755 + MER117 DNA MER1_type 17 123 -74 738 45 18 18 chr12 109618700 109618812 -34167643 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 389 267 80 27 chr12 109618812 109618867 -34167588 + MER117 DNA MER1_type 123 174 -23 864 261 59 8 chr12 109619103 109619341 -34167114 - MIR SINE MIR -10 252 3 1680 169 21 28 chr12 109619664 109619954 -34166501 - AluJo SINE Alu -19 293 6 1851 140 3 36 chr12 109619961 109620136 -34166319 - MLT1A1 LTR MaLR -40 325 165 2349 103 0 3 chr12 109620136 109620436 -34166019 - AluSp SINE Alu -14 299 1 1851 140 3 36 chr12 109620436 109620596 -34165859 - MLT1A1 LTR MaLR -200 165 1 897 203 132 0 chr12 109620695 109620892 -34165563 + MER58A DNA MER1_type 2 224 0 543 221 29 0 chr12 109621115 109621255 -34165200 + MER103 DNA DNA 2 145 -21 222 250 11 65 chr12 109621385 109621477 -34164978 + GA-rich Low_complexity Low_complexity 2 88 0 379 315 27 40 chr12 109621696 109621845 -34164610 - MIR SINE MIR -115 147 1 345 47 0 0 chr12 109622374 109622417 -34164038 + (TA)n Simple_repeat Simple_repeat 1 43 0 375 23 0 0 chr12 109622417 109622461 -34163994 + (CA)n Simple_repeat Simple_repeat 2 45 0 2309 104 7 0 chr12 109622502 109622799 -34163656 - AluSx SINE Alu -13 299 1 338 0 0 23 chr12 109623209 109623252 -34163203 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 339 127 0 63 chr12 109623608 109623659 -34162796 + AluJ/FLAM SINE Alu 2 50 -252 1682 97 0 0 chr12 109623659 109623876 -34162579 + AluSg/x SINE Alu 84 300 -10 339 127 0 63 chr12 109623876 109623887 -34162568 + AluJ/FLAM SINE Alu 50 60 -242 336 181 75 60 chr12 109623887 109624020 -34162435 + HAL1 LINE L1 2244 2378 -129 1206 308 125 21 chr12 109624817 109625782 -34160673 + L2 LINE L2 2240 3304 -9 1714 163 10 17 chr12 109625840 109626128 -34160327 - AluJo SINE Alu -26 286 1 2147 184 55 27 chr12 109626139 109626689 -34159766 - L1MD3 LINE L1 0 7995 7431 308 222 0 0 chr12 109626746 109626809 -34159646 - MLT1F1 LTR MaLR -442 125 63 1057 189 0 0 chr12 109627946 109628115 -34158340 - AluJb SINE Alu -9 303 135 23 0 0 0 chr12 109628248 109628271 -34158184 + AT_rich Low_complexity Low_complexity 1 23 0 834 287 12 8 chr12 109628421 109628679 -34157776 - MIR SINE MIR -2 260 2 1732 133 101 16 chr12 109629323 109629640 -34156815 - MER2 DNA MER2_type 0 344 1 615 180 7 43 chr12 109629862 109630001 -34156454 + MER94 DNA DNA 1 134 0 376 226 78 43 chr12 109630572 109630687 -34155768 - L2 LINE L2 -2 3311 3193 1289 264 154 6 chr12 109630719 109631193 -34155262 + MLT1H1 LTR MaLR 12 555 0 381 335 50 11 chr12 109631378 109631560 -34154895 + HAL1 LINE L1 1550 1738 -769 2350 66 0 10 chr12 109631571 109631859 -34154596 + AluY SINE Alu 1 285 -26 191 61 30 0 chr12 109631862 109631895 -34154560 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2119 101 7 7 chr12 109632330 109632663 -34153792 + AluSx SINE Alu 1 333 0 329 310 0 0 chr12 109632835 109632922 -34153533 + (CA)n Simple_repeat Simple_repeat 2 88 0 343 186 0 0 chr12 109633594 109633653 -34152802 + FLAM_A SINE Alu 1 59 -74 341 281 88 35 chr12 109635503 109635674 -34150781 + MIR SINE MIR 12 191 -71 1288 117 17 69 chr12 109635681 109635912 -34150543 - MER20 DNA MER1_type 0 219 1 656 173 86 7 chr12 109636481 109636620 -34149835 - MER5A DNA MER1_type -11 178 29 2189 93 0 3 chr12 109636620 109636909 -34149546 - AluSx SINE Alu -18 294 7 23 0 0 0 chr12 109638682 109638705 -34147750 + AT_rich Low_complexity Low_complexity 1 23 0 1203 194 52 92 chr12 109638705 109638852 -34147603 - L1MA9 LINE L1 -39 6273 6122 1817 151 4 4 chr12 109638852 109639159 -34147296 + AluJb SINE Alu 3 309 0 1203 194 52 92 chr12 109639159 109639488 -34146967 - L1MA9 LINE L1 -190 6122 5814 2883 51 0 19 chr12 109639508 109639857 -34146598 - L1PA8 LINE L1 0 6172 5829 2378 57 0 20 chr12 109639857 109640154 -34146301 - AluY SINE Alu -20 291 1 2883 51 0 19 chr12 109640154 109640179 -34146276 - L1PA8 LINE L1 -343 5829 5805 291 297 125 62 chr12 109640260 109640452 -34146003 + MIR SINE MIR 32 235 -27 2508 64 0 6 chr12 109640621 109640932 -34145523 - AluY SINE Alu -2 309 1 305 273 41 25 chr12 109641228 109641349 -34145106 - MLT1H LTR MaLR -333 216 94 653 178 0 0 chr12 109641403 109641536 -34144919 - AluJb SINE Alu 0 311 179 1791 153 30 6 chr12 109641536 109641875 -34144580 - L1M4 LINE L1 -580 5604 5258 1624 209 10 0 chr12 109641917 109642218 -34144237 + AluJb SINE Alu 1 304 -8 1370 185 16 38 chr12 109642218 109642471 -34143984 - L1M4 LINE L1 -1519 4627 4383 2563 43 0 7 chr12 109642471 109642770 -34143685 - AluY SINE Alu -14 297 1 1370 185 16 38 chr12 109642770 109642889 -34143566 - L1M4 LINE L1 -1763 4383 4263 935 278 146 80 chr12 109642890 109642994 -34143461 - L1M4 LINE L1 -827 5319 5223 2265 102 0 0 chr12 109642994 109643289 -34143166 - AluSg SINE Alu -15 295 1 935 278 146 80 chr12 109643289 109643645 -34142810 - L1M4 LINE L1 -923 5223 4892 1059 227 18 0 chr12 109643645 109643865 -34142590 + MER58A DNA MER1_type 1 224 0 935 278 146 80 chr12 109643865 109643967 -34142488 - L1M4 LINE L1 -1254 4892 4798 1746 154 0 69 chr12 109643967 109644286 -34142169 - AluJb SINE Alu -15 297 1 935 278 146 80 chr12 109644286 109644900 -34141555 - L1M4 LINE L1 -1348 4798 4226 778 211 0 0 chr12 109644900 109645033 -34141422 + FLAM_A SINE Alu 1 133 0 935 278 146 80 chr12 109645033 109645284 -34141171 - L1M4 LINE L1 -1920 4226 3993 1804 193 0 3 chr12 109645284 109645585 -34140870 - AluJo SINE Alu -11 301 2 935 278 146 80 chr12 109645585 109645989 -34140466 - L1M4 LINE L1 -2153 3993 3617 721 179 26 0 chr12 109645989 109646106 -34140349 - FLAM_A SINE Alu -13 120 1 935 278 146 80 chr12 109646106 109646218 -34140237 - L1M4 LINE L1 -2529 3617 2506 329 310 0 0 chr12 109646777 109646864 -34139591 + (TG)n Simple_repeat Simple_repeat 2 88 0 2180 83 0 17 chr12 109647036 109647373 -34139082 - AluSx SINE Alu 0 333 2 1684 170 28 0 chr12 109647386 109647669 -34138786 - AluJb SINE Alu -10 302 12 465 335 47 6 chr12 109648009 109648179 -34138276 - MIR SINE MIR -62 200 24 259 275 36 65 chr12 109648267 109648405 -34138050 + HAL1 LINE L1 10 143 -2364 1088 259 88 38 chr12 109648555 109649719 -34136736 + HAL1 LINE L1 352 1666 -841 235 244 12 35 chr12 109751342 109751428 -34035027 + L1MC/D LINE L1 5742 5825 -1983 3643 177 89 1 chr12 109751508 109752293 -34034162 + L1PBa LINE L1 3 856 -6007 352 240 0 13 chr12 109752393 109752468 -34033987 + MLT1H LTR MaLR 86 159 -390 213 0 81 0 chr12 109753329 109753366 -34033089 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2983 26 3 3 chr12 109753366 109753745 -34032710 - L1PA3 LINE L1 -18 6137 5778 4256 8 0 0 chr12 109753745 109754251 -34032204 + L1PA3 LINE L1 5267 5772 -383 254 344 111 12 chr12 109754325 109754569 -34031886 - L2 LINE L2 -993 2321 2054 * 371 289 156 0 chr12 109754541 109754676 -34031779 + MIR SINE MIR 9 164 -98 675 44 66 0 chr12 109754780 109754917 -34031538 + (TA)n Simple_repeat Simple_repeat 2 147 0 1555 182 10 37 chr12 109755022 109755319 -34031136 + AluJo SINE Alu 1 289 -23 209 184 0 0 chr12 109758843 109758881 -34027574 + CT-rich Low_complexity Low_complexity 2 39 0 371 314 58 10 chr12 109759958 109760165 -34026290 - L1MEc LINE L1 -4702 1885 1669 320 182 117 13 chr12 109760230 109760307 -34026148 - MIR SINE MIR 0 262 178 3666 251 41 38 chr12 109760307 109760558 -34025897 - L1MB4 LINE L1 0 6180 5931 2245 191 78 32 chr12 109760558 109761055 -34025400 - MLT2B1 LTR ERVL 0 520 1 3666 251 41 38 chr12 109761055 109762687 -34023768 - L1MB4 LINE L1 -249 5931 4265 380 263 13 95 chr12 109762875 109763081 -34023374 + LTR67 LTR ERVL 329 516 -41 2051 141 82 35 chr12 109763081 109763485 -34022970 - MSTB LTR MaLR 0 426 4 380 263 13 95 chr12 109763485 109763510 -34022945 + LTR67 LTR ERVL 516 541 -16 526 201 201 21 chr12 109763540 109763729 -34022726 + L2 LINE L2 3090 3312 -1 487 292 14 14 chr12 109764979 109765123 -34021332 - L2 LINE L2 -1 3312 3169 523 263 21 30 chr12 109765143 109765309 -34021146 + Charlie7 DNA MER1_type 466 631 -1981 2375 73 0 0 chr12 109765309 109765610 -34020845 - AluY SINE Alu -10 301 1 523 263 21 30 chr12 109765610 109765679 -34020776 + Charlie7 DNA MER1_type 631 699 -1913 203 220 20 53 chr12 109765785 109765935 -34020520 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 * 302 134 62 36 chr12 109765836 109765948 -34020507 + (TA)n Simple_repeat Simple_repeat 1 115 0 187 108 31 46 chr12 109765968 109766033 -34020422 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1755 142 81 39 chr12 109766089 109766448 -34020007 + THE1C LTR MaLR 1 374 -1 377 286 27 0 chr12 109768381 109768493 -34017962 + MLT1L LTR MaLR 161 275 -340 386 314 113 71 chr12 109768648 109769196 -34017259 + HAL1b LINE L1 58 628 -720 262 100 0 0 chr12 109769421 109769461 -34016994 - L1MEc LINE L1 -4938 1468 1429 3026 166 13 9 chr12 109769467 109770003 -34016452 + MER44D DNA MER2_type 9 601 -4 414 199 66 22 chr12 109770023 109770159 -34016296 - L1MEc LINE L1 -4987 1422 1281 242 305 26 78 chr12 109770336 109770438 -34016017 + L2 LINE L2 3113 3206 -107 2118 166 31 0 chr12 109770438 109770829 -34015626 + MER57A LTR ERV1 1 403 0 242 305 26 78 chr12 109770829 109770880 -34015575 + L2 LINE L2 3206 3258 -55 193 191 0 32 chr12 109771243 109771306 -34015149 + CT-rich Low_complexity Low_complexity 6 66 0 423 259 34 14 chr12 109772080 109772227 -34014228 + MIR SINE MIR 110 259 -3 330 274 24 24 chr12 109773877 109773961 -34012494 + L2 LINE L2 3218 3301 -12 411 215 0 0 chr12 109773961 109774054 -34012401 + L1MA6 LINE L1 6019 6111 -189 770 182 0 8 chr12 109774054 109774186 -34012269 - FLAM_C SINE Alu -11 132 2 1103 124 25 0 chr12 109774186 109774388 -34012067 + L1MA6 LINE L1 6094 6300 0 21 0 0 0 chr12 109774388 109774409 -34012046 + AT_rich Low_complexity Low_complexity 1 21 0 314 250 0 0 chr12 109774500 109774564 -34011891 + L2 LINE L2 3201 3264 -8 310 224 56 84 chr12 109774879 109774986 -34011469 - MIR3 SINE MIR -44 164 61 497 322 46 25 chr12 109775086 109775432 -34011023 + L2 LINE L2 2646 3084 -229 360 248 48 0 chr12 109775525 109775650 -34010805 - L1ME1 LINE L1 -5 6161 6031 902 235 103 7 chr12 109775671 109775952 -34010503 + L1ME1 LINE L1 5721 6028 -138 460 333 20 10 chr12 109775960 109776155 -34010300 + L2 LINE L2 3117 3313 0 13357 199 18 2 chr12 109776455 109781150 -34005305 + L1PB1 LINE L1 2827 7589 0 262 238 24 0 chr12 109781178 109781262 -34005193 + L1MC/D LINE L1 5812 5897 -1911 222 156 0 0 chr12 109781970 109782015 -34004440 + CT-rich Low_complexity Low_complexity 2 46 0 270 0 0 0 chr12 109782015 109782045 -34004410 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 326 70 42 chr12 109782121 109782477 -34003978 + MLT1K LTR MaLR 178 543 -45 229 310 14 0 chr12 109782924 109782995 -34003460 - L2 LINE L2 0 3313 3242 213 39 0 0 chr12 109783237 109783263 -34003192 + (T)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr12 109783277 109783300 -34003155 + AT_rich Low_complexity Low_complexity 1 23 0 40352 37 21 2 chr12 109783300 109789332 -33997123 - L1PA2 LINE L1 -1 6154 2 353 324 97 0 chr12 109789362 109789538 -33996917 + MLT1K LTR MaLR 100 292 -296 217 274 74 74 chr12 109789558 109789693 -33996762 + MIR SINE MIR 29 163 -99 291 192 182 10 chr12 109790105 109790204 -33996251 - L1MC5 LINE L1 -534 7427 7312 234 260 0 55 chr12 109790208 109790281 -33996174 - L1MC4 LINE L1 -571 7471 7403 288 214 92 20 chr12 109790411 109790509 -33995946 - L1MC5 LINE L1 -808 7153 7049 2070 145 40 13 chr12 109790749 109791129 -33995326 - MLT1B LTR MaLR 0 390 1 3509 153 73 5 chr12 109791255 109791914 -33994541 + MER50 LTR ERV1 1 704 -30 304 294 140 7 chr12 109792179 109792276 -33994179 - MIR SINE MIR -102 160 39 2230 96 17 0 chr12 109792276 109792577 -33993878 + AluSq SINE Alu 1 306 -7 304 294 140 7 chr12 109792577 109792615 -33993840 - MIR SINE MIR -223 39 7 358 223 36 18 chr12 109792992 109793104 -33993351 - MIR SINE MIR -58 204 91 424 113 141 0 chr12 109793107 109793178 -33993277 + MLT1B LTR MaLR 4 84 -306 826 246 5 5 chr12 109793234 109793433 -33993022 + MLT1B LTR MaLR 192 390 0 566 273 106 15 chr12 109793599 109793863 -33992592 + MLT1L LTR MaLR 168 455 -160 804 119 5 1 chr12 109793868 109794003 -33992452 + MSTB1 LTR MaLR 17 154 -274 228 313 30 0 chr12 109793980 109794111 -33992344 + MLT1L LTR MaLR 454 588 -27 * 228 174 65 0 chr12 109794506 109794552 -33991903 - L3 LINE CR1 -297 1280 1232 2058 173 43 17 chr12 109794909 109795330 -33991125 + MSTB1 LTR MaLR 1 432 0 558 338 64 10 chr12 109795333 109795537 -33990918 - MIR SINE MIR -28 234 20 246 213 66 49 chr12 109798601 109798692 -33987763 - MIR SINE MIR -68 194 103 228 258 155 48 chr12 109798767 109799019 -33987436 + L1ME4a LINE L1 5784 6062 -59 322 167 0 0 chr12 109800155 109800221 -33986234 - MER116 DNA Mariner 0 80 15 880 250 54 6 chr12 109800366 109800593 -33985862 + MIR SINE MIR 14 249 -13 188 222 0 0 chr12 109800643 109800679 -33985776 - L2 LINE L2 -90 3223 3188 362 287 84 14 chr12 109801052 109801195 -33985260 - L2 LINE L2 0 3313 3161 1554 248 42 20 chr12 109801218 109801670 -33984785 + LTR40a LTR ERVL 7 468 -51 21 36 0 0 chr12 109801897 109801925 -33984530 + AT_rich Low_complexity Low_complexity 1 28 0 874 321 42 76 chr12 109802011 109802312 -33984143 - L2 LINE L2 -472 2842 2532 1455 222 0 10 chr12 109802312 109802609 -33983846 - AluJo SINE Alu -18 294 1 874 321 42 76 chr12 109802609 109803048 -33983407 - L2 LINE L2 -782 2532 2127 721 263 79 59 chr12 109803183 109803615 -33982840 + L2 LINE L2 50 3298 -15 225 0 0 0 chr12 109803617 109803642 -33982813 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 520 348 72 30 chr12 109804474 109804876 -33981579 - L2 LINE L2 -1260 2054 1636 184 365 36 18 chr12 109805296 109805463 -33980992 - L2 LINE L2 -1677 1637 1468 385 331 38 13 chr12 109805522 109805679 -33980776 - MIR SINE MIR 0 262 102 225 132 0 0 chr12 109805725 109805763 -33980692 + (TG)n Simple_repeat Simple_repeat 1 38 0 2331 97 0 3 chr12 109806025 109806324 -33980131 - AluSg SINE Alu -12 298 1 24 53 0 0 chr12 109806326 109806364 -33980091 + AT_rich Low_complexity Low_complexity 1 38 0 2271 105 13 0 chr12 109806445 109806751 -33979704 - AluSg SINE Alu 0 310 1 912 292 62 18 chr12 109806777 109807337 -33979118 - L1MEc LINE L1 -3532 2683 2149 222 37 0 0 chr12 109807337 109807364 -33979091 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2032 128 4 4 chr12 109807368 109807649 -33978806 - AluSx SINE Alu -31 281 1 912 292 62 18 chr12 109807649 109807724 -33978731 - L1MEc LINE L1 -4068 2147 2066 11383 134 19 21 chr12 109807782 109809689 -33976766 + Tigger3(Golem) DNA MER2_type 2 1903 -1126 252 217 0 0 chr12 109809688 109809734 -33976721 + Tigger3(Golem) DNA MER2_type 2983 3028 -1 * 1818 164 10 24 chr12 109809772 109810070 -33976385 + AluJo SINE Alu 1 294 -18 2104 93 57 23 chr12 109810327 109810628 -33975827 - AluY SINE Alu 0 311 1 205 29 59 0 chr12 109810836 109810870 -33975585 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 536 294 13 20 chr12 109810927 109811080 -33975375 + MIR SINE MIR 2 153 -109 766 278 26 30 chr12 109811092 109811326 -33975129 - MIR SINE MIR 0 262 30 5141 95 3 7 chr12 109811954 109812723 -33973732 + L1PB1 LINE L1 5385 6150 -1 322 165 25 0 chr12 109813373 109813452 -33973003 + L1MA10 LINE L1 6253 6333 -1 49 60 0 0 chr12 109813526 109813610 -33972845 + AT_rich Low_complexity Low_complexity 1 84 0 2377 121 10 17 chr12 109814406 109814812 -33971643 + L1MA4A LINE L1 5890 6292 -11 2331 91 0 0 chr12 109814929 109815225 -33971230 + AluSg SINE Alu 1 296 -14 1087 241 92 14 chr12 109815367 109815736 -33970719 + MLT1K LTR MaLR 191 588 0 977 287 108 25 chr12 109815927 109816150 -33970305 - L2 LINE L2 0 3313 3110 2501 108 11 19 chr12 109816150 109816528 -33969927 - THE1C LTR MaLR 0 375 1 977 287 108 25 chr12 109816528 109816928 -33969527 - L2 LINE L2 -203 3110 2636 988 166 4 104 chr12 109817097 109817338 -33969117 + MER20 DNA MER1_type 2 218 -1 2044 149 62 6 chr12 109818618 109818973 -33967482 - THE1C LTR MaLR 0 375 1 29 0 0 0 chr12 109820080 109820109 -33966346 + AT_rich Low_complexity Low_complexity 1 29 0 595 309 100 44 chr12 109820386 109820817 -33965638 - LTR67 LTR ERVL 0 557 103 230 306 0 47 chr12 109821043 109821128 -33965327 - MIR SINE MIR -155 107 27 2092 164 8 13 chr12 109821136 109821513 -33964942 + THE1C LTR MaLR 1 375 0 409 312 140 0 chr12 109821648 109821834 -33964621 + MIR SINE MIR 43 254 -8 27 0 0 0 chr12 109822588 109822615 -33963840 + AT_rich Low_complexity Low_complexity 1 27 0 965 211 166 30 chr12 109822615 109822732 -33963723 + AluJo SINE Alu 2 102 -200 288 0 0 0 chr12 109822732 109822764 -33963691 + (CAA)n Simple_repeat Simple_repeat 2 33 0 965 211 166 30 chr12 109822764 109822911 -33963544 + AluJo SINE Alu 102 302 0 236 285 28 83 chr12 109823017 109823161 -33963294 + L2 LINE L2 2945 3080 -192 1172 160 138 90 chr12 109823337 109823458 -33962997 + MER93b LTR ERV1 1 115 -258 3112 87 41 0 chr12 109823458 109823895 -33962560 + L1PA10 LINE L1 5699 6153 -15 1172 160 138 90 chr12 109823895 109824129 -33962326 + MER93b LTR ERV1 115 373 0 2089 135 30 28 chr12 109824250 109824613 -33961842 + THE1B LTR MaLR 1 364 0 301 148 0 50 chr12 109825759 109825860 -33960595 + (TA)n Simple_repeat Simple_repeat 1 96 0 407 310 51 13 chr12 109825959 109826117 -33960338 - MIR SINE MIR -53 209 46 1829 136 0 41 chr12 109827205 109827537 -33958918 - AluJb SINE Alu 0 320 1 286 238 12 48 chr12 109827703 109827787 -33958668 - MIR SINE MIR -35 227 147 2203 148 11 5 chr12 109827913 109828292 -33958163 + L1PA15 LINE L1 5777 6157 -8 23 0 0 0 chr12 109828292 109828315 -33958140 + AT_rich Low_complexity Low_complexity 1 23 0 227 383 47 8 chr12 109829129 109829257 -33957198 + MIR SINE MIR 18 150 -112 360 301 140 0 chr12 109829268 109829404 -33957051 - MIR SINE MIR -106 156 2 397 246 183 35 chr12 109829719 109829861 -33956594 - MER5A DNA MER1_type 0 189 27 484 181 29 19 chr12 109829871 109829976 -33956479 + MER5A DNA MER1_type 7 112 -77 232 179 90 45 chr12 109830160 109830227 -33956228 + L2 LINE L2 3166 3235 -37 696 182 47 7 chr12 109832020 109832168 -33954287 + MER30 DNA MER1_type 55 208 -22 2697 181 123 6 chr12 109832526 109833194 -33953261 + MER45R DNA AcHobo 836 1581 0 3515 80 4 6 chr12 109833502 109833987 -33952468 + L1PA8 LINE L1 5689 6172 0 609 259 97 73 chr12 109834086 109834796 -33951659 - HAL1 LINE L1 -1043 1464 738 365 289 82 94 chr12 109835050 109835379 -33951076 - HAL1 LINE L1 -2095 412 88 616 278 119 22 chr12 109836064 109836291 -33950164 + MIR SINE MIR 2 250 -12 818 198 12 17 chr12 109838136 109838308 -33948147 - MIR SINE MIR 0 262 92 701 256 39 43 chr12 109838962 109839036 -33947419 + MIR SINE MIR 21 94 -168 2396 78 3 0 chr12 109839036 109839330 -33947125 + AluY SINE Alu 1 295 -16 701 256 39 43 chr12 109839330 109839485 -33946970 + MIR SINE MIR 94 249 -13 199 355 85 14 chr12 109839975 109840116 -33946339 - MIR SINE MIR -36 226 76 1937 116 84 7 chr12 109840519 109840803 -33945652 - AluSx SINE Alu -6 306 1 419 248 62 12 chr12 109840803 109840964 -33945491 - L1MC/D LINE L1 -1985 5823 5655 211 292 97 18 chr12 109841140 109841253 -33945202 + MIR SINE MIR 101 222 -40 212 246 105 0 chr12 109841758 109841815 -33944640 - L2 LINE L2 -3 3269 3207 185 320 20 0 chr12 109842133 109842183 -33944272 + L2 LINE L2 3218 3268 -4 323 277 31 82 chr12 109842247 109842406 -33944049 + MIR3 SINE MIR 20 170 -38 766 254 43 14 chr12 109843423 109843632 -33942823 - MIR SINE MIR -40 222 8 617 256 97 13 chr12 109844547 109844774 -33941681 + L2 LINE L2 2835 3080 -233 299 305 14 14 chr12 109845137 109845278 -33941177 - L1ME3A LINE L1 -288 5882 5742 1684 143 76 52 chr12 109845329 109845658 -33940797 + MER1B DNA MER1_type 1 337 0 1827 158 3 6 chr12 109845738 109846074 -33940381 + L1MA4A LINE L1 5966 6300 -3 509 315 76 14 chr12 109846136 109846919 -33939536 - L1MC/D LINE L1 -634 5540 4696 374 256 45 15 chr12 109847003 109847136 -33939319 - L1MC/D LINE L1 -1611 4535 4399 29 0 0 0 chr12 109847138 109847167 -33939288 + AT_rich Low_complexity Low_complexity 1 29 0 635 133 0 10 chr12 109847354 109847474 -33938981 - AluSg/x SINE Alu 0 309 197 254 247 91 110 chr12 109847526 109847789 -33938666 + L2 LINE L2 3038 3295 -18 183 189 0 0 chr12 109847815 109847868 -33938587 + (CA)n Simple_repeat Simple_repeat 2 54 0 217 158 26 0 chr12 109848109 109848147 -33938308 + GA-rich Low_complexity Low_complexity 2 40 0 211 296 121 23 chr12 109849799 109849931 -33936524 - L2 LINE L2 -18 3254 3110 237 241 19 83 chr12 109850080 109850188 -33936267 + MLT1H LTR MaLR 431 531 -18 182 300 130 20 chr12 109850981 109851081 -33935374 + L2 LINE L2 3144 3254 -18 2485 56 0 3 chr12 109851098 109851402 -33935053 + AluY SINE Alu 1 303 -8 203 290 187 15 chr12 109851445 109851579 -33934876 - MIR SINE MIR -11 197 21 405 258 58 25 chr12 109851924 109852044 -33934411 - MER91C DNA MER1_type -16 124 1 231 210 0 0 chr12 109852130 109852192 -33934263 - L1MA10 LINE L1 -1 6333 6272 512 233 181 0 chr12 109854166 109854299 -33932156 - MER5A DNA MER1_type 0 189 33 193 372 94 77 chr12 109854613 109854847 -33931608 - L2 LINE L2 -40 3232 2995 358 274 71 19 chr12 109854981 109855144 -33931311 - MIR SINE MIR -62 146 31 2482 141 23 21 chr12 109855324 109855756 -33930699 + Tigger2a DNA MER2_type 1 433 -1 336 338 78 7 chr12 109856013 109856155 -33930300 - MER91A DNA MER1_type -44 152 1 207 333 9 35 chr12 109856225 109856339 -33930116 - L2 LINE L2 -1499 1815 1705 288 380 6 23 chr12 109858049 109858220 -33928235 - L3 LINE CR1 -3 1574 1407 1836 196 19 14 chr12 109859469 109859832 -33926623 + MLT1A1 LTR MaLR 1 365 0 186 167 0 0 chr12 109859850 109859886 -33926569 + (CA)n Simple_repeat Simple_repeat 1 36 0 1703 113 0 0 chr12 109860391 109860613 -33925842 + AluSq SINE Alu 1 222 -91 3108 175 35 13 chr12 109860771 109861487 -33924968 - L1P LINE L1 -772 5374 4643 5565 95 27 28 chr12 109861516 109862448 -33924007 - L1PB1 LINE L1 -5 6146 5211 2280 216 22 4 chr12 109862435 109862981 -33923474 - L1PB1 LINE L1 -1511 4635 4080 * 1976 266 1 19 chr12 109862979 109863647 -33922808 + L1 LINE L1 2174 2829 -3317 * 243 286 43 57 chr12 109865308 109865448 -33921007 + L2 LINE L2 2628 2765 -549 339 321 14 7 chr12 109865769 109865909 -33920546 + (TGGA)n Simple_repeat Simple_repeat 3 143 0 185 379 11 0 chr12 109866867 109866954 -33919501 - L3 LINE CR1 -606 971 884 262 381 80 14 chr12 109867007 109867343 -33919112 - L2 LINE L2 -187 3085 2722 1738 121 36 0 chr12 109868595 109868844 -33917611 - AluSg SINE Alu -52 258 1 1641 184 7 14 chr12 109869315 109869597 -33916858 + AluJb SINE Alu 1 280 -32 22 35 0 0 chr12 109871814 109871843 -33914612 + AT_rich Low_complexity Low_complexity 1 29 0 7036 88 15 0 chr12 109872273 109872674 -33913781 + L1P3 LINE L1 2 395 -6066 216 0 0 0 chr12 109872674 109872698 -33913757 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7036 88 15 0 chr12 109872698 109873290 -33913165 + L1P3 LINE L1 395 1010 -5451 6723 18 0 0 chr12 109873390 109874160 -33912295 + L1PA3 LINE L1 5386 6155 0 189 107 0 0 chr12 109874230 109874258 -33912197 + (CG)n Simple_repeat Simple_repeat 2 29 0 * 300 53 0 0 chr12 109874257 109874295 -33912160 + (CA)n Simple_repeat Simple_repeat 1 38 0 29 70 0 0 chr12 109876461 109876518 -33909937 + AT_rich Low_complexity Low_complexity 1 57 0 497 218 148 1 chr12 109877824 109877976 -33908479 + MLT1H LTR MaLR 14 173 -376 821 263 53 24 chr12 109878123 109878370 -33908085 - MIR SINE MIR -3 259 6 1497 260 51 23 chr12 109878431 109879105 -33907350 + L2 LINE L2 2605 3297 -16 338 146 252 19 chr12 109879443 109879546 -33906909 + MER53 DNA DNA 1 127 -62 248 336 103 49 chr12 109879627 109879975 -33906480 + L3 LINE CR1 1202 1568 -9 1299 294 40 30 chr12 109880005 109880505 -33905950 - MLT1K LTR MaLR 0 588 84 324 325 50 17 chr12 109881029 109881149 -33905306 - L2 LINE L2 -15 3298 3175 1672 93 0 0 chr12 109881458 109881684 -33904771 + L1PA8 LINE L1 5939 6164 -8 237 159 79 0 chr12 109881821 109881884 -33904571 - L1ME4a LINE L1 -5 6116 6049 25 31 0 0 chr12 109881988 109882020 -33904435 + AT_rich Low_complexity Low_complexity 1 32 0 207 364 114 45 chr12 109882886 109883018 -33903437 + L2 LINE L2 3111 3251 -21 1458 135 151 6 chr12 109883182 109883501 -33902954 - MER47A DNA MER2_type 0 366 2 225 250 50 0 chr12 109883571 109883631 -33902824 - L2 LINE L2 -1 3271 3209 187 213 163 50 chr12 109884353 109884433 -33902022 - MIR SINE MIR -106 156 68 273 336 97 0 chr12 109884650 109884784 -33901671 + L2 LINE L2 3106 3252 -61 533 158 20 0 chr12 109884808 109884909 -33901546 + MLT1C LTR MaLR 6 108 -359 407 98 0 0 chr12 109884953 109885014 -33901441 + MER58 DNA MER1_type 2357 2417 -3 683 289 164 4 chr12 109885302 109885527 -33900928 + MIR SINE MIR 2 262 0 23 0 0 0 chr12 109886453 109886476 -33899979 + AT_rich Low_complexity Low_complexity 1 23 0 317 285 13 119 chr12 109888055 109888206 -33898249 + L2 LINE L2 3134 3268 -4 304 286 198 62 chr12 109888488 109888717 -33897738 + MIR3 SINE MIR 5 262 0 219 36 0 0 chr12 109889473 109889501 -33896954 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2035 114 0 11 chr12 109889503 109889783 -33896672 - AluSc SINE Alu -32 277 1 515 221 16 0 chr12 109890224 109890346 -33896109 + MER3 DNA MER1_type 56 179 -30 2006 126 18 30 chr12 109891349 109891683 -33894772 - L1PA13 LINE L1 -19 6144 5815 1444 74 0 0 chr12 109891683 109891886 -33894569 + L1P4 LINE L1 5352 5554 -609 2173 235 67 26 chr12 109892115 109892963 -33893492 + L1MEc LINE L1 159 1131 -5265 2520 72 0 0 chr12 109892963 109893267 -33893188 + AluY SINE Alu 1 304 -7 2173 235 67 26 chr12 109893267 109893317 -33893138 + L1MEc LINE L1 1131 1177 -5219 22 0 0 0 chr12 109893317 109893339 -33893116 + AT_rich Low_complexity Low_complexity 1 22 0 864 206 0 35 chr12 109893339 109893509 -33892946 + FAM SINE Alu 1 164 -11 1185 247 47 6 chr12 109893567 109894036 -33892419 + L1MEc LINE L1 2035 2522 -3874 521 131 28 28 chr12 109894037 109894144 -33892311 + MLT2B2 LTR ERVL 405 511 -4 255 103 0 0 chr12 109894173 109894212 -33892243 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 373 254 63 28 chr12 109894546 109894688 -33891767 - MIR SINE MIR -3 259 113 2373 78 23 7 chr12 109895628 109895936 -33890519 + AluSq SINE Alu 1 313 0 223 336 56 9 chr12 109896993 109897100 -33889355 + MIR SINE MIR 18 129 -79 476 303 52 52 chr12 109897107 109897358 -33889097 + MIR SINE MIR 2 252 -10 * 793 220 39 6 chr12 109897354 109897536 -33888919 + MIR SINE MIR 75 262 0 346 260 53 102 chr12 109897801 109898047 -33888408 + L1ME4a LINE L1 5710 5943 -178 321 271 0 0 chr12 109898537 109898644 -33887811 - L1MA8 LINE L1 -1 6290 6184 2160 67 11 0 chr12 109899190 109899473 -33886982 - L1PA7 LINE L1 -1 6153 5868 2062 44 4 4 chr12 109899573 109899845 -33886610 + L1P3 LINE L1 1033 1304 -5157 1624 98 0 0 chr12 109899850 109900085 -33886370 - L1P3 LINE L1 -5581 880 646 * 28279 99 7 7 chr12 109900059 109904998 -33881457 + L1PA7 LINE L1 931 5866 -288 193 393 8 17 chr12 109905758 109905875 -33880580 - L2 LINE L2 -2504 810 695 535 242 25 0 chr12 109906150 109906270 -33880185 + MER63A DNA MER1_type 88 210 0 541 272 51 19 chr12 109906337 109906495 -33879960 + MER91B DNA MER1_type 17 179 -11 393 272 49 43 chr12 109906508 109906670 -33879785 + Charlie8 DNA MER1_type 1 163 -2254 376 273 198 37 chr12 109906822 109907383 -33879072 + L2 LINE L2 2550 3095 -218 320 265 29 29 chr12 109907432 109907534 -33878921 + MER5A DNA MER1_type 84 185 -4 183 270 40 54 chr12 109908543 109908617 -33877838 - MER5B DNA MER1_type -63 115 43 551 101 0 0 chr12 109908720 109908799 -33877656 + MADE1 DNA Mariner 1 79 -1 11662 110 20 13 chr12 109910745 109913330 -33873125 - L1PA10 LINE L1 -90 6078 3488 251 307 79 87 chr12 109913332 109913459 -33872996 + L2 LINE L2 289 414 -2900 353 242 23 53 chr12 109913517 109913649 -33872806 + MLT1F1 LTR MaLR 70 197 -370 811 244 124 65 chr12 109913724 109914110 -33872345 + MLT1H LTR MaLR 1 409 -140 250 121 52 0 chr12 109916383 109916441 -33870014 - L1ME4a LINE L1 0 6121 6061 591 254 77 55 chr12 109916568 109916930 -33869525 - L1ME4a LINE L1 -292 5829 5460 205 289 84 24 chr12 109917096 109917179 -33869276 - MIR SINE MIR -97 111 24 2568 217 19 4 chr12 109917612 109918141 -33868314 + MLT1G LTR MaLR 39 575 -15 22 35 0 0 chr12 109918268 109918297 -33868158 + AT_rich Low_complexity Low_complexity 1 29 0 394 239 155 21 chr12 109918600 109918742 -33867713 - MIR SINE MIR -94 168 8 567 273 30 26 chr12 109918743 109918974 -33867481 + MER112 DNA MER1_type 3 234 -26 2670 42 0 0 chr12 109919116 109919422 -33867033 - AluY SINE Alu -5 306 1 486 206 16 56 chr12 109920270 109920396 -33866059 + MIR SINE MIR 129 249 -13 242 292 58 50 chr12 109920400 109920520 -33865935 - MIR SINE MIR -74 188 68 237 259 74 0 chr12 109920589 109920643 -33865812 - L2 LINE L2 -67 3205 3148 381 149 0 0 chr12 109921485 109921552 -33864903 + (TATG)n Simple_repeat Simple_repeat 2 68 0 322 324 9 0 chr12 109922924 109923035 -33863420 - MER117 DNA MER1_type -83 114 3 221 338 40 46 chr12 109923213 109923364 -33863091 + MIR SINE MIR 21 170 -92 259 320 132 30 chr12 109923417 109923614 -33862841 - MLT1K LTR MaLR -241 347 131 197 200 267 13 chr12 109923745 109923820 -33862635 + MIR SINE MIR 161 254 -8 505 310 200 17 chr12 109924137 109924492 -33861963 - L2 LINE L2 -32 3281 2862 1789 187 60 36 chr12 109924510 109924976 -33861479 + MLT1D LTR MaLR 29 505 0 561 119 0 59 chr12 109925651 109925752 -33860703 - FLAM_C SINE Alu -6 137 43 233 240 0 0 chr12 109926523 109926573 -33859882 + MER69 DNA AcHobo 2472 2521 -5 1080 302 85 30 chr12 109926764 109928229 -33858226 - L1MEd LINE L1 -2291 3838 2294 468 272 101 59 chr12 109928526 109928915 -33857540 - L1MEd LINE L1 -3907 2403 1950 564 279 69 53 chr12 109929209 109929484 -33856971 - L1MEd LINE L1 -861 1629 1360 209 56 0 56 chr12 109929484 109929520 -33856935 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 564 279 69 53 chr12 109929520 109930208 -33856247 - L1MEd LINE L1 -1130 1360 656 999 168 40 5 chr12 109930211 109930413 -33856042 + L1MC1 LINE L1 6112 6320 -13 35569 90 12 7 chr12 109930692 109931892 -33854563 - L1PA6 LINE L1 0 6154 4962 2523 72 0 0 chr12 109931892 109932197 -33854258 - AluY SINE Alu -6 305 1 35569 90 12 7 chr12 109932197 109937111 -33849344 - L1PA6 LINE L1 -1192 4962 11 653 335 111 19 chr12 109937454 109938068 -33848387 - L1M4 LINE L1 -1821 4325 3656 2201 129 0 3 chr12 109938976 109939286 -33847169 - AluSx SINE Alu -3 309 1 968 312 99 47 chr12 109939798 109940483 -33845972 + L2 LINE L2 2303 3018 -254 253 287 0 30 chr12 109940714 109940815 -33845640 + A-rich Low_complexity Low_complexity 3 100 0 185 108 27 0 chr12 109942438 109942475 -33843980 + C-rich Low_complexity Low_complexity 4 41 0 326 273 74 16 chr12 109944395 109944516 -33841939 - MIR3 SINE MIR -4 204 77 186 367 0 17 chr12 109944704 109944764 -33841691 - L2 LINE L2 -80 3192 3134 2190 105 0 19 chr12 109944778 109945091 -33841364 + AluSc SINE Alu 1 307 -2 341 224 15 0 chr12 109945327 109945394 -33841061 + L2 LINE L2 3205 3272 0 921 168 42 2 chr12 109945413 109945644 -33840811 + L1MA9 LINE L1 5707 5950 -221 3170 61 23 12 chr12 109945644 109946070 -33840385 + L1PA10 LINE L1 5736 6168 0 1706 148 42 45 chr12 109946070 109946444 -33840011 + L1MA9 LINE L1 5936 6312 0 205 396 19 9 chr12 109946862 109946968 -33839487 - L2 LINE L2 -638 2676 2570 1768 189 0 3 chr12 109947909 109948195 -33838260 + AluJo SINE Alu 7 291 -21 278 231 0 15 chr12 109948740 109948805 -33837650 - MIR SINE MIR -5 257 194 335 293 81 41 chr12 109948929 109949052 -33837403 - L2 LINE L2 -2 3311 3184 384 271 17 17 chr12 109949413 109949531 -33836924 - MIR SINE MIR -117 145 28 402 191 61 0 chr12 109949585 109949700 -33836755 - Charlie8 DNA MER1_type -2264 153 32 710 292 130 60 chr12 109950047 109950945 -33835510 - L1M4 LINE L1 -2866 3280 2320 28 61 0 0 chr12 109950964 109951013 -33835442 + AT_rich Low_complexity Low_complexity 1 49 0 941 131 114 6 chr12 109951204 109951379 -33835076 + MER21B LTR ERV1 658 851 -12 557 292 64 19 chr12 109951400 109952000 -33834455 - L1M1 LINE L1 -637 5525 4942 259 250 16 0 chr12 109952082 109952146 -33834309 - MIR SINE MIR 0 262 198 3845 143 57 2 chr12 109952172 109953338 -33833117 + L1PB1 LINE L1 2408 3637 -3225 6004 155 13 7 chr12 109953340 109955124 -33831331 + L1PB1 LINE L1 4711 6508 -359 465 19 0 0 chr12 109955124 109955178 -33831277 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 6004 155 13 7 chr12 109955178 109955540 -33830915 + L1PB1 LINE L1 6508 6866 -1 634 304 83 42 chr12 109955650 109956107 -33830348 - L1M1 LINE L1 -1316 4830 4377 392 249 189 5 chr12 109956174 109956375 -33830080 - L1M1 LINE L1 -2261 3885 3648 322 279 70 8 chr12 109956437 109956566 -33829889 - L1M4 LINE L1 -2385 3761 3625 1479 194 43 0 chr12 109957231 109957556 -33828899 - AluJo SINE Alu 0 312 1 388 250 94 55 chr12 109957852 109957980 -33828475 - MLT1H-int LTR MaLR -1445 135 2 1122 292 22 85 chr12 109957984 109958536 -33827919 - MLT1H LTR MaLR -3 546 30 4341 48 0 0 chr12 109958553 109959079 -33827376 + L1PA5 LINE L1 5627 6152 -2 21 82 0 0 chr12 109959275 109959324 -33827131 + AT_rich Low_complexity Low_complexity 1 49 0 379 224 76 79 chr12 109959350 109959627 -33826828 - L1M4 LINE L1 -2741 3405 3130 187 364 160 14 chr12 109960497 109960772 -33825683 + L2 LINE L2 1609 1923 -1391 537 269 29 18 chr12 109960927 109961098 -33825357 + MIR SINE MIR 60 232 -30 2007 209 50 24 chr12 109961941 109962401 -33824054 - MER70A LTR ERVL 0 472 1 198 0 0 0 chr12 109963204 109963226 -33823229 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 241 352 97 17 chr12 109964478 109964654 -33821801 + MIR SINE MIR 54 243 -19 694 250 22 33 chr12 109964945 109965268 -33821187 - LTR16B LTR ERVL 0 464 107 2284 153 68 0 chr12 109965320 109965719 -33820736 + MSTB LTR MaLR 1 426 0 242 265 15 0 chr12 109966126 109966194 -33820261 - MLT1J1 LTR MaLR -14 432 364 686 254 38 19 chr12 109966327 109966536 -33819919 - MLT1J2 LTR MaLR -233 217 5 598 268 38 13 chr12 109967628 109967785 -33818670 + MIR3 SINE MIR 2 162 -46 2343 99 0 10 chr12 109968139 109968452 -33818003 - AluSq SINE Alu -3 310 1 358 313 19 97 chr12 109968943 109969211 -33817244 + MIR SINE MIR 13 259 -3 204 200 0 0 chr12 109969394 109969444 -33817011 + (AATAG)n Simple_repeat Simple_repeat 1 50 0 2874 46 5 82 chr12 110019507 110019920 -33766535 - SVA Other Other -328 1058 678 774 209 53 0 chr12 110019920 110020107 -33766348 - MIR SINE MIR -3 259 63 199 252 37 37 chr12 110020187 110020322 -33766133 - L2 LINE L2 -181 3091 2957 1372 211 7 18 chr12 110020724 110021003 -33765452 + AluJo SINE Alu 30 305 -7 204 314 183 16 chr12 110021061 110021252 -33765203 + MIR SINE MIR 20 242 -20 200 385 0 0 chr12 110021906 110021958 -33764497 + C-rich Low_complexity Low_complexity 5 56 0 1851 122 65 4 chr12 110022947 110023226 -33763229 - AluSg SINE Alu -14 296 1 398 367 25 50 chr12 110023436 110023796 -33762659 + L2 LINE L2 2917 3267 -5 306 259 221 15 chr12 110023866 110023997 -33762458 - MLT1K LTR MaLR -359 229 72 277 179 143 0 chr12 110025682 110025766 -33760689 + AluS SINE Alu 1 96 -206 2152 58 0 0 chr12 110025886 110026147 -33760308 - AluY SINE Alu -50 261 1 2309 97 0 23 chr12 110026194 110026503 -33759952 - AluSg SINE Alu -8 302 1 1606 207 102 46 chr12 110026729 110027270 -33759185 - L1MB7 LINE L1 -15 6169 5599 437 261 0 0 chr12 110028266 110028404 -33758051 + C-rich Low_complexity Low_complexity 1 138 0 245 333 0 11 chr12 110028418 110028511 -33757944 + C-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr12 110028984 110029004 -33757451 + (A)n Simple_repeat Simple_repeat 1 20 0 1032 181 25 29 chr12 110029648 110029852 -33756603 - MER3 DNA MER1_type -5 204 2 326 306 113 40 chr12 110030320 110030416 -33756039 - L1ME LINE L1 -334 5787 5699 483 63 0 0 chr12 110030416 110030479 -33755976 + (TA)n Simple_repeat Simple_repeat 2 64 0 326 306 113 40 chr12 110030479 110030657 -33755798 - L1ME LINE L1 -422 5699 5493 437 306 14 74 chr12 110030991 110031354 -33755101 + L2 LINE L2 2250 2590 -724 492 213 178 0 chr12 110031855 110032005 -33754450 + MER5A DNA MER1_type 6 186 -3 187 301 147 14 chr12 110032031 110032153 -33754302 - MIR SINE MIR -70 192 47 2186 136 0 0 chr12 110032153 110032455 -33754000 + AluSg SINE Alu 1 302 -8 187 301 147 14 chr12 110032455 110032475 -33753980 - MIR SINE MIR -215 47 31 285 191 0 15 chr12 110032795 110032863 -33753592 + (CA)n Simple_repeat Simple_repeat 2 68 0 319 488 0 0 chr12 110032893 110032973 -33753482 + A-rich Low_complexity Low_complexity 1 80 0 2012 96 32 7 chr12 110033321 110033603 -33752852 + AluSc SINE Alu 1 289 -20 1151 225 30 7 chr12 110034078 110034376 -33752079 - MER57B LTR ERV1 0 434 130 2218 116 0 10 chr12 110034737 110035048 -33751407 - AluSg SINE Alu -2 308 1 303 268 72 21 chr12 110035101 110035198 -33751257 - MIR SINE MIR -6 256 155 4156 15 0 0 chr12 110035644 110036105 -33750350 - L1PA3 LINE L1 -176 5979 5519 414 0 0 0 chr12 110036593 110036639 -33749816 + (CA)n Simple_repeat Simple_repeat 2 47 0 2787 13 0 3 chr12 110036910 110037214 -33749241 - AluYb8 SINE Alu -15 303 1 477 301 59 7 chr12 110037470 110037623 -33748832 - MIR3 SINE MIR -28 180 20 257 347 40 16 chr12 110037990 110038114 -33748341 - L2 LINE L2 -4 3268 3142 1016 250 19 11 chr12 110038402 110038662 -33747793 - MIR SINE MIR 0 262 1 25 51 0 0 chr12 110039754 110039793 -33746662 + AT_rich Low_complexity Low_complexity 1 39 0 530 270 61 20 chr12 110041944 110042140 -33744315 - MIR SINE MIR -56 206 3 308 244 83 32 chr12 110043249 110043405 -33743050 - L1ME4a LINE L1 -3 6118 5955 419 245 95 36 chr12 110043565 110043759 -33742696 - L1ME4a LINE L1 -474 5647 5503 442 292 0 0 chr12 110045053 110045190 -33741265 - MER117 DNA MER1_type -33 164 28 184 204 91 0 chr12 110045563 110045607 -33740848 - L2 LINE L2 -4 3268 3221 310 221 70 23 chr12 110045811 110045897 -33740558 + L2 LINE L2 3210 3299 -14 301 250 130 67 chr12 110046521 110046729 -33739726 + MIR SINE MIR 34 254 -8 299 164 18 0 chr12 110047225 110047280 -33739175 - MER5B DNA MER1_type -5 173 118 530 126 153 9 chr12 110047299 110047410 -33739045 + L1MA5A LINE L1 6170 6296 -1 192 237 0 0 chr12 110047419 110047457 -33738998 - MER5B DNA MER1_type -85 93 56 611 271 72 0 chr12 110047641 110047848 -33738607 + MIR SINE MIR 41 262 0 2411 243 57 40 chr12 110048936 110049033 -33737422 - L1MC4 LINE L1 -2 8040 7946 2063 116 39 0 chr12 110049033 110049318 -33737137 + AluSg SINE Alu 1 296 -14 2411 243 57 40 chr12 110049318 110050093 -33736362 - L1MC4 LINE L1 -96 7946 7153 493 328 65 10 chr12 110053163 110053364 -33733091 + L3 LINE CR1 1255 1466 -111 372 303 0 15 chr12 110053847 110053979 -33732476 - MIR SINE MIR -11 251 122 1266 215 112 23 chr12 110053992 110054379 -33732076 - MLT1C LTR MaLR -8 459 39 271 297 10 10 chr12 110054399 110054500 -33731955 - MIR SINE MIR -149 113 13 369 316 21 26 chr12 110055053 110055243 -33731212 - Charlie8 DNA MER1_type -2203 214 26 1065 177 41 32 chr12 110055323 110055543 -33730912 - MLT1A1 LTR MaLR 0 365 144 439 208 10 0 chr12 110055559 110055660 -33730795 - U13 snRNA snRNA -2 102 1 815 107 160 8 chr12 110055661 110055792 -33730663 - MLT1A1 LTR MaLR -214 151 1 580 301 94 20 chr12 110055844 110056313 -33730142 - L2 LINE L2 -255 3058 2552 578 180 0 0 chr12 110056327 110056416 -33730039 + AluJ/FLAM SINE Alu 5 93 -219 904 286 142 33 chr12 110056445 110057193 -33729262 - L2 LINE L2 -774 2540 1712 248 254 55 36 chr12 110057216 110057326 -33729129 - L1MC5 LINE L1 -48 7913 7802 330 337 77 6 chr12 110057347 110057528 -33728927 - L2 LINE L2 -1596 1718 1525 216 276 26 0 chr12 110057536 110057612 -33728843 + (TTAG)n Simple_repeat Simple_repeat 4 81 0 377 316 153 29 chr12 110057625 110057801 -33728654 - L2 LINE L2 -1815 1499 1346 2122 152 39 14 chr12 110057801 110058156 -33728299 - THE1B LTR MaLR 0 364 1 377 316 153 29 chr12 110058156 110058562 -33727893 - L2 LINE L2 -1968 1346 845 215 294 140 70 chr12 110058754 110059040 -33727415 - L2 LINE L2 -2790 524 219 585 289 66 25 chr12 110059901 110060098 -33726357 + MIR SINE MIR 3 207 -55 486 257 0 0 chr12 110060147 110060295 -33726160 + (TG)n Simple_repeat Simple_repeat 2 149 0 1868 141 3 10 chr12 110060824 110061121 -33725334 + AluSx SINE Alu 1 295 -17 309 284 93 19 chr12 110061336 110061498 -33724957 + L1MEd LINE L1 775 948 -5171 413 216 108 24 chr12 110061540 110061707 -33724748 + L1ME4a LINE L1 5940 6120 -1 332 311 43 37 chr12 110062058 110062222 -33724233 + L3 LINE CR1 1369 1533 -44 392 261 0 0 chr12 110062277 110062369 -33724086 + MER103 DNA DNA 23 114 -52 667 281 158 10 chr12 110062401 110062604 -33723851 - MIR SINE MIR -21 241 9 1568 107 167 8 chr12 110062775 110063027 -33723428 - AluSg SINE Alu -8 292 1 225 83 28 0 chr12 110063105 110063141 -33723314 + MER103 DNA DNA 109 145 -21 2506 74 16 0 chr12 110063649 110063972 -33722483 + L1PA13 LINE L1 5825 6152 -11 761 265 47 9 chr12 110064050 110064261 -33722194 - MIR SINE MIR 0 262 44 26 30 0 0 chr12 110065184 110065217 -33721238 + AT_rich Low_complexity Low_complexity 1 33 0 1418 181 0 53 chr12 110065384 110065687 -33720768 + AluJo SINE Alu 1 287 -25 253 295 26 26 chr12 110065922 110066000 -33720455 - LTR67 LTR ERVL -366 191 114 240 0 24 48 chr12 110066300 110066342 -33720113 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2031 138 0 0 chr12 110066647 110066938 -33719517 + AluSx SINE Alu 4 294 -18 1867 146 3 3 chr12 110067144 110067439 -33719016 + AluJb SINE Alu 5 299 -13 1529 291 58 38 chr12 110068832 110069402 -33717053 - L1MEc LINE L1 -4305 2091 1494 2026 139 0 0 chr12 110069402 110069712 -33716743 + AluY SINE Alu 1 310 -1 1529 291 58 38 chr12 110069712 110070079 -33716376 - L1MEc LINE L1 -4902 1494 1136 43541 53 2 3 chr12 110070089 110070856 -33715599 - L1PA5 LINE L1 -3 6151 5385 2092 77 3 14 chr12 110070856 110071141 -33715314 - AluY SINE Alu -29 282 1 43541 53 2 3 chr12 110071141 110076535 -33709920 - L1PA5 LINE L1 -769 5385 1 1144 227 93 0 chr12 110076537 110076933 -33709522 - L1MEc LINE L1 -5239 1157 725 281 364 36 29 chr12 110077531 110077671 -33708784 - MER5A DNA MER1_type 0 189 49 486 257 10 0 chr12 110077672 110077773 -33708682 + MER91A DNA MER1_type 50 151 -45 202 253 61 81 chr12 110077791 110077890 -33708565 + MER91A DNA MER1_type 90 186 -10 1159 257 111 17 chr12 110077891 110078307 -33708148 - LTR16B LTR ERVL -2 462 8 2041 118 49 22 chr12 110078315 110078680 -33707775 - THE1C LTR MaLR 0 375 1 194 269 21 86 chr12 110078689 110078782 -33707673 - MER5A DNA MER1_type -100 89 3 271 275 84 66 chr12 110080139 110080306 -33706149 - MIR SINE MIR -73 189 20 186 243 100 43 chr12 110080504 110080574 -33705881 + MIR SINE MIR 12 85 -177 2525 134 0 3 chr12 110080820 110081186 -33705269 + MLT1A1 LTR MaLR 1 365 0 558 243 23 8 chr12 110081337 110081486 -33704969 + MIR SINE MIR 42 193 -62 2556 109 19 6 chr12 110081503 110081862 -33704593 + THE1B LTR MaLR 1 364 0 208 328 0 16 chr12 110082216 110082277 -33704178 + L2 LINE L2 3206 3265 -7 436 346 48 22 chr12 110082495 110082723 -33703732 + L2 LINE L2 2871 3104 -168 409 345 38 29 chr12 110082723 110082932 -33703523 + MIR SINE MIR 4 214 -48 318 106 0 0 chr12 110083326 110083373 -33703082 + (CA)n Simple_repeat Simple_repeat 2 48 0 1646 126 7 57 chr12 110083515 110083816 -33702639 + AluY SINE Alu 1 286 -25 253 295 26 26 chr12 110084051 110084129 -33702326 - LTR67 LTR ERVL -366 191 114 240 0 24 48 chr12 110084429 110084471 -33701984 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2031 138 0 0 chr12 110084776 110085067 -33701388 + AluSx SINE Alu 4 294 -18 1867 146 3 3 chr12 110085273 110085568 -33700887 + AluJb SINE Alu 5 299 -13 2058 185 19 46 chr12 110087420 110087896 -33698559 - MLT1C LTR MaLR -3 464 2 635 216 59 64 chr12 110088950 110089154 -33697301 - MLT1J LTR MaLR -154 357 155 264 250 0 0 chr12 110089158 110089222 -33697233 - L1M4 LINE L1 -1534 4612 4549 398 314 117 26 chr12 110089354 110089556 -33696899 - MIR SINE MIR -39 169 3 190 226 22 28 chr12 110089650 110089750 -33696705 + MIR SINE MIR 72 231 -31 856 214 63 75 chr12 110089968 110090220 -33696235 + MIR SINE MIR 3 251 -11 276 30 0 0 chr12 110090320 110090353 -33696102 + (TC)n Simple_repeat Simple_repeat 2 34 0 206 176 0 0 chr12 110090851 110090885 -33695570 - L2 LINE L2 0 3313 3280 305 197 40 13 chr12 110090888 110090964 -33695491 + MER116 DNA Mariner 3 80 0 230 306 16 0 chr12 110091003 110091065 -33695390 - L2 LINE L2 0 3313 3251 329 305 121 21 chr12 110091093 110091234 -33695221 - MIR SINE MIR -11 251 97 1611 189 3 6 chr12 110091708 110092020 -33694435 - AluJo SINE Alu -1 311 1 414 0 0 0 chr12 110092271 110092317 -33694138 + (TG)n Simple_repeat Simple_repeat 1 46 0 644 296 40 10 chr12 110092504 110092703 -33693752 - MIR SINE MIR -14 248 44 377 258 132 19 chr12 110092765 110092924 -33693531 + MIR SINE MIR 86 262 0 239 257 22 117 chr12 110093045 110093224 -33693231 - L3 LINE CR1 -125 1452 1291 232 245 58 65 chr12 110093685 110093824 -33692631 - L1ME LINE L1 -199 5922 5785 386 206 83 144 chr12 110094099 110094209 -33692246 - MIR SINE MIR -11 251 155 1714 172 3 7 chr12 110094209 110094499 -33691956 - AluJb SINE Alu -23 289 1 386 206 83 144 chr12 110094499 110094568 -33691887 - MIR SINE MIR -107 155 83 212 239 68 119 chr12 110094720 110094896 -33691559 - MIR SINE MIR -8 254 88 718 208 107 19 chr12 110095590 110095749 -33690706 - MIR SINE MIR 0 262 90 2422 68 3 3 chr12 110095758 110096067 -33690388 - AluSp SINE Alu -4 309 1 570 239 176 0 chr12 110096302 110096461 -33689994 + MER3 DNA MER1_type 2 188 -21 1046 256 109 22 chr12 110096474 110096885 -33689570 - L2 LINE L2 -338 2976 2530 1741 166 0 27 chr12 110096895 110097196 -33689259 - AluJo SINE Alu -19 293 1 1767 161 9 28 chr12 110097200 110097517 -33688938 - AluJb SINE Alu -1 311 1 464 242 16 40 chr12 110097666 110097790 -33688665 + L2 LINE L2 3193 3313 0 323 303 63 49 chr12 110098342 110098484 -33687971 + MIR3 SINE MIR 1 144 -64 217 253 168 21 chr12 110099163 110099258 -33687197 - L3 LINE CR1 -2 1575 1467 215 265 128 17 chr12 110099479 110099596 -33686859 + MIR SINE MIR 2 131 -131 1289 115 0 0 chr12 110099690 110099872 -33686583 - AluSp SINE Alu -2 311 130 331 300 88 53 chr12 110099878 110100009 -33686446 - L1ME4a LINE L1 -3 6118 5974 1007 233 96 94 chr12 110100009 110100457 -33685998 - MLT1J LTR MaLR 0 511 60 2136 123 0 0 chr12 110100457 110100759 -33685696 + AluSx SINE Alu 1 302 -10 1007 233 96 94 chr12 110100759 110100820 -33685635 - MLT1J LTR MaLR -451 60 1 331 300 88 53 chr12 110100820 110100915 -33685540 - L1ME4a LINE L1 -147 5974 5884 531 256 50 19 chr12 110101144 110101304 -33685151 + MIR SINE MIR 8 172 -90 654 13 0 0 chr12 110101329 110101404 -33685051 + (CA)n Simple_repeat Simple_repeat 1 75 0 805 226 133 4 chr12 110102049 110102283 -33684172 + L1MD3 LINE L1 7730 7993 -2 2391 62 0 34 chr12 110102292 110102614 -33683841 + AluY SINE Alu 1 311 0 668 269 41 0 chr12 110102675 110102846 -33683609 + MIR SINE MIR 15 192 -70 687 257 108 40 chr12 110102849 110103145 -33683310 - L2 LINE L2 0 3313 2998 1268 138 0 5 chr12 110103553 110103749 -33682706 + AluSx SINE Alu 1 195 -117 431 309 51 14 chr12 110104769 110104986 -33681469 + L1ME4a LINE L1 5570 5794 -327 328 291 120 40 chr12 110105453 110105628 -33680827 + L1ME4a LINE L1 5816 6004 -117 545 199 45 58 chr12 110105645 110105801 -33680654 + L1ME4a LINE L1 5968 6121 0 762 296 36 28 chr12 110106245 110106492 -33679963 - MIR SINE MIR -12 250 2 200 262 36 71 chr12 110106924 110107008 -33679447 + MIR SINE MIR 35 115 -147 762 229 93 15 chr12 110107087 110107292 -33679163 + MIR SINE MIR 32 252 -10 275 248 9 0 chr12 110107292 110107397 -33679058 + (ATG)n Simple_repeat Simple_repeat 3 108 0 1890 146 14 0 chr12 110107412 110107706 -33678749 + AluSx SINE Alu 1 298 -14 226 229 0 0 chr12 110107871 110107919 -33678536 - L2 LINE L2 -2 3270 3223 917 277 23 0 chr12 110108561 110108781 -33677674 + MIR SINE MIR 17 241 -21 515 285 0 8 chr12 110109125 110109248 -33677207 + L2 LINE L2 3192 3313 0 343 231 187 8 chr12 110109245 110109379 -33677076 - MIR SINE MIR -77 185 28 * 185 243 0 0 chr12 110109686 110109723 -33676732 + MIR SINE MIR 88 124 -138 230 85 0 0 chr12 110109729 110109776 -33676679 - LTR66 LTR ERVL -157 453 407 43 35 0 0 chr12 110109776 110109833 -33676622 + AT_rich Low_complexity Low_complexity 1 57 0 1661 181 10 0 chr12 110109833 110110132 -33676323 - AluJb SINE Alu -10 302 1 923 260 66 40 chr12 110110188 110110705 -33675750 - L2 LINE L2 -126 3187 2655 418 213 71 49 chr12 110111093 110111316 -33675139 - MLT1H LTR MaLR -16 526 223 221 250 200 0 chr12 110112051 110112111 -33674344 + MIR SINE MIR 190 261 -1 517 319 0 0 chr12 110112311 110112430 -33674025 + MIR SINE MIR 23 141 -121 180 111 0 0 chr12 110112433 110112460 -33673995 + (ATG)n Simple_repeat Simple_repeat 2 28 0 1459 201 48 91 chr12 110112489 110113008 -33673447 - MER34 LTR ERV1 -3 539 44 1910 148 0 0 chr12 110113008 110113305 -33673150 - AluSx SINE Alu -15 297 1 1459 201 48 91 chr12 110113305 110113348 -33673107 - MER34 LTR ERV1 -498 44 1 216 298 0 0 chr12 110113353 110113410 -33673045 + (TGG)n Simple_repeat Simple_repeat 2 58 0 259 204 0 0 chr12 110113446 110113490 -33672965 + MIR SINE MIR 213 256 -6 225 259 17 0 chr12 110113539 110113597 -33672858 - MER5A DNA MER1_type -1 188 130 321 252 107 0 chr12 110113749 110113852 -33672603 + MIR3 SINE MIR 77 190 -18 597 222 33 19 chr12 110114462 110114616 -33671839 + MIR SINE MIR 102 258 -4 743 277 103 0 chr12 110114679 110114903 -33671552 + MIR SINE MIR 6 252 -10 786 308 11 0 chr12 110115852 110116112 -33670343 + L1ME3 LINE L1 5892 6154 -8 1651 109 121 8 chr12 110116732 110116997 -33669458 - AluSg1 SINE Alu -14 295 1 2004 108 37 0 chr12 110117560 110117856 -33668599 + AluSx SINE Alu 1 307 -5 1577 136 83 0 chr12 110118321 110118586 -33667869 - AluJb SINE Alu -25 287 1 307 282 127 0 chr12 110118723 110118875 -33667580 - MIR SINE MIR -68 140 20 259 242 16 0 chr12 110119392 110119454 -33667001 + L2 LINE L2 3201 3263 -9 3508 147 87 29 chr12 110119620 110120319 -33666136 + L1MB7 LINE L1 5430 6169 -15 2171 100 0 23 chr12 110120545 110120854 -33665601 + AluSg SINE Alu 1 302 -8 2105 117 3 0 chr12 110120897 110121196 -33665259 + AluSx SINE Alu 1 300 -12 3199 171 22 15 chr12 110121485 110122088 -33664367 + L1MB3 LINE L1 5541 6147 -36 232 245 58 65 chr12 110122816 110122955 -33663500 - L1ME LINE L1 -199 5922 5785 234 260 156 10 chr12 110123230 110123326 -33663129 - MIR SINE MIR -11 251 142 1332 229 10 14 chr12 110123340 110123628 -33662827 - AluJo SINE Alu -13 289 3 23 0 0 0 chr12 110123813 110123836 -33662619 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr12 110123906 110123927 -33662528 + (T)n Simple_repeat Simple_repeat 1 21 0 318 271 33 40 chr12 110124240 110124391 -33662064 - MLT1L LTR MaLR -35 580 431 1826 152 3 7 chr12 110125854 110126150 -33660305 - AluJb SINE Alu -17 295 1 1821 146 55 47 chr12 110126173 110126535 -33659920 + MLT1A1 LTR MaLR 1 365 0 1703 231 56 35 chr12 110126551 110127065 -33659390 - MER20B DNA MER1_type -256 527 3 1135 255 80 5 chr12 110127945 110128345 -33658110 - LTR16A LTR ERVL 0 450 21 606 224 208 0 chr12 110128600 110128783 -33657672 + MER58A DNA MER1_type 1 221 -3 2298 93 0 6 chr12 110129815 110130128 -33656327 + AluSq SINE Alu 1 311 -2 1871 142 0 13 chr12 110130140 110130443 -33656012 + AluSx SINE Alu 1 299 -13 187 238 0 24 chr12 110130832 110130874 -33655581 + L2 LINE L2 3268 3308 -5 2223 112 3 0 chr12 110131689 110132001 -33654454 + AluSp SINE Alu 1 313 0 243 79 0 0 chr12 110132070 110132108 -33654347 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 530 301 59 7 chr12 110132556 110132709 -33653746 + MIR3 SINE MIR 20 180 -28 2118 98 3 13 chr12 110132964 110133270 -33653185 + AluSx SINE Alu 1 303 -9 559 294 151 33 chr12 110133684 110134243 -33652212 - L2 LINE L2 0 3313 2681 1988 139 3 3 chr12 110134319 110134620 -33651835 - AluSx SINE Alu -11 301 1 353 191 103 0 chr12 110134676 110134744 -33651711 - MARNA DNA Mariner -185 401 327 26 82 0 0 chr12 110135228 110135289 -33651166 + AT_rich Low_complexity Low_complexity 1 61 0 340 289 179 24 chr12 110135349 110135685 -33650770 - L1ME4a LINE L1 -207 5914 5527 1636 188 3 17 chr12 110135797 110136089 -33650366 + AluJo SINE Alu 1 288 -24 263 288 14 0 chr12 110136345 110136418 -33650037 + MIR SINE MIR 187 260 -2 2222 112 0 0 chr12 110136779 110137092 -33649363 + AluSq SINE Alu 1 313 0 420 212 212 8 chr12 110137093 110137225 -33649230 - MER103 DNA DNA 0 166 8 1491 180 6 53 chr12 110137725 110137905 -33648550 - AluJo SINE Alu -5 307 120 207 0 0 0 chr12 110137905 110137928 -33648527 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1715 122 59 0 chr12 110137928 110138182 -33648273 - AluSx SINE Alu -27 285 17 1491 180 6 53 chr12 110138182 110138322 -33648133 - AluJo SINE Alu -190 122 1 2271 65 37 0 chr12 110138332 110138626 -33647829 - AluY SINE Alu -6 305 1 435 289 16 0 chr12 110138630 110138758 -33647697 - L1ME4a LINE L1 -296 5825 5696 2174 173 83 28 chr12 110139002 110139267 -33647188 + LTR42 LTR ERVL 1 305 -190 2060 121 3 46 chr12 110139267 110139615 -33646840 + MER1B DNA MER1_type 1 333 -4 2174 173 83 28 chr12 110139615 110139818 -33646637 + LTR42 LTR ERVL 305 495 0 268 297 31 55 chr12 110140151 110140279 -33646176 - MER20B DNA MER1_type -596 187 63 498 321 75 9 chr12 110141748 110141960 -33644495 - MIR SINE MIR -21 241 16 1958 122 90 35 chr12 110143114 110143459 -33642996 - THE1B LTR MaLR 0 364 1 829 237 76 13 chr12 110143601 110143837 -33642618 + MIR SINE MIR 12 262 0 1153 154 315 0 chr12 110144652 110144925 -33641530 + MER47A DNA MER2_type 1 359 -7 2127 105 3 3 chr12 110145230 110145536 -33640919 - AluSq SINE Alu -7 306 1 225 321 49 0 chr12 110146105 110146186 -33640269 + MER91 DNA MER1_type 45 129 -67 2147 86 3 30 chr12 110146186 110146489 -33639966 - AluSx SINE Alu -17 295 1 854 237 45 5 chr12 110146691 110146889 -33639566 + MER6B DNA MER2_type 5 210 0 224 286 25 0 chr12 110147002 110147121 -33639334 + (TA)n Simple_repeat Simple_repeat 1 122 0 1063 219 25 14 chr12 110147353 110147597 -33638858 - MIR SINE MIR -3 259 16 2026 142 0 0 chr12 110148275 110148584 -33637871 + AluSx SINE Alu 1 309 -3 611 300 43 13 chr12 110148861 110149091 -33637364 + MIR SINE MIR 12 248 -14 1823 112 130 30 chr12 110149961 110150291 -33636164 - THE1B LTR MaLR 0 364 2 2191 118 0 0 chr12 110152091 110152396 -33634059 - AluSx SINE Alu -5 307 3 540 242 146 69 chr12 110152684 110152889 -33633566 - HAL1 LINE L1 -169 2338 2150 2143 112 3 0 chr12 110152889 110153192 -33633263 - AluSq SINE Alu -9 304 1 540 242 146 69 chr12 110153192 110153559 -33632896 - HAL1 LINE L1 -357 2150 1687 309 326 125 18 chr12 110153559 110153783 -33632672 - HAL1 LINE L1 -2213 294 47 1054 188 147 0 chr12 110153817 110154041 -33632414 - MIR SINE MIR 0 262 6 1654 94 47 33 chr12 110154158 110154433 -33632022 + L1PA13 LINE L1 5825 6103 -60 2012 92 39 0 chr12 110154702 110154983 -33631472 + AluSx SINE Alu 1 292 -20 2743 142 9 2 chr12 110155457 110155888 -33630567 - MER57B LTR ERV1 0 434 1 970 213 88 25 chr12 110156271 110156510 -33629945 - LTR16C LTR ERVL -2 489 236 2091 166 45 57 chr12 110156515 110157026 -33629429 + MLT1D LTR MaLR 1 505 0 185 276 152 29 chr12 110157441 110157546 -33628909 + L2 LINE L2 3155 3272 0 223 285 192 35 chr12 110157623 110157795 -33628660 + MIR SINE MIR 8 206 -56 2127 100 10 10 chr12 110157909 110158209 -33628246 + AluSx SINE Alu 1 300 -12 5922 32 9 0 chr12 110158613 110159306 -33627149 - L1PA4 LINE L1 -2 6153 5455 1264 166 0 14 chr12 110159372 110159583 -33626872 + MER3 DNA MER1_type 2 209 0 386 320 107 7 chr12 110159591 110159741 -33626714 + MIR SINE MIR 10 174 -88 195 42 0 0 chr12 110159837 110159861 -33626594 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 492 275 149 19 chr12 110160239 110160468 -33625987 - MIR SINE MIR 0 262 3 364 183 92 69 chr12 110161127 110161258 -33625197 + L2 LINE L2 3180 3313 0 426 293 64 7 chr12 110161466 110161606 -33624849 + MIR SINE MIR 101 248 -14 226 111 0 0 chr12 110161609 110161645 -33624810 - MER96B DNA MER1_type? -23 152 117 * 329 149 263 18 chr12 110161618 110161676 -33624779 + MER96B DNA MER1_type? 37 79 -338 1949 210 68 5 chr12 110161676 110162115 -33624340 - MLT1C LTR MaLR 0 467 1 329 149 263 18 chr12 110162115 110162170 -33624285 + MER96B DNA MER1_type? 79 178 -239 824 208 45 49 chr12 110162367 110162632 -33623823 + MER90 LTR ERV1 1 264 -311 232 236 0 18 chr12 110162660 110162715 -33623740 + MER90 LTR ERV1 561 614 0 341 317 43 48 chr12 110162956 110163164 -33623291 + L2 LINE L2 3106 3312 -1 356 326 26 66 chr12 110163334 110163561 -33622894 - L2 LINE L2 -606 2708 2491 2015 185 56 50 chr12 110163691 110164193 -33622262 + MLT1D LTR MaLR 1 505 0 201 153 34 17 chr12 110165092 110165151 -33621304 + GA-rich Low_complexity Low_complexity 2 61 0 199 228 228 0 chr12 110165374 110165431 -33621024 - MIR SINE MIR -103 105 36 272 254 180 76 chr12 110165460 110166055 -33620400 - LTR41 LTR ERVL -8 765 109 215 224 86 52 chr12 110166140 110166198 -33620257 + MIR3 SINE MIR 101 160 -48 303 239 23 23 chr12 110166341 110166429 -33620026 + ERVL LTR ERVL 4075 4162 -1602 2195 82 0 23 chr12 110166651 110166955 -33619500 + AluSx SINE Alu 1 297 -15 414 0 0 0 chr12 110167225 110167271 -33619184 + (TG)n Simple_repeat Simple_repeat 2 47 0 5696 12 0 11 chr12 110167759 110168403 -33618052 + L1PA3 LINE L1 5519 6155 0 2099 105 84 23 chr12 110169577 110169920 -33616535 + THE1B LTR MaLR 1 364 0 1671 222 244 11 chr12 110170964 110171598 -33614857 + LTR50 LTR ERVL 8 789 -6 219 245 38 19 chr12 110171952 110172005 -33614450 - L2 LINE L2 -87 3185 3132 258 297 177 29 chr12 110174203 110174412 -33612043 + MER102a DNA MER1_type 91 330 0 201 211 0 0 chr12 110174525 110174563 -33611892 - MIR SINE MIR -8 254 217 929 268 19 0 chr12 110174610 110174823 -33611632 + MER58A DNA MER1_type 8 224 0 481 242 73 32 chr12 110175001 110175125 -33611330 - MER91A DNA MER1_type -40 156 28 971 79 0 0 chr12 110175247 110175374 -33611081 - AluSc SINE Alu -178 131 5 1661 132 75 7 chr12 110175795 110176076 -33610379 - AluJo SINE Alu -12 300 1 278 154 19 0 chr12 110176526 110176578 -33609877 + MER112 DNA MER1_type 1 53 -207 209 216 0 0 chr12 110176608 110176645 -33609810 + (CA)n Simple_repeat Simple_repeat 1 37 0 267 133 0 0 chr12 110176645 110176690 -33609765 + (GA)n Simple_repeat Simple_repeat 2 46 0 329 252 29 29 chr12 110176692 110176795 -33609660 + MER112 DNA MER1_type 105 207 -53 1891 144 32 90 chr12 110176823 110177234 -33609221 + MLT1B LTR MaLR 4 390 0 189 74 0 0 chr12 110177317 110177344 -33609111 + (CCCA)n Simple_repeat Simple_repeat 4 30 0 225 330 64 0 chr12 110177543 110177652 -33608803 + L2 LINE L2 3157 3272 0 487 159 0 0 chr12 110177669 110177757 -33608698 + L1MA9 LINE L1 6195 6282 -30 361 261 43 26 chr12 110178134 110178249 -33608206 + L2 LINE L2 3191 3307 -6 229 237 86 32 chr12 110178546 110178639 -33607816 + L1MC5 LINE L1 7827 7924 -37 824 250 78 20 chr12 110178870 110179114 -33607341 + MIR SINE MIR 5 262 0 2195 115 0 0 chr12 110179739 110180043 -33606412 - AluSx SINE Alu -8 304 1 943 208 5 50 chr12 110180192 110180394 -33606061 + MER63A DNA MER1_type 18 210 0 555 248 0 24 chr12 110180787 110180912 -33605543 + MER5B DNA MER1_type 57 178 0 558 267 145 14 chr12 110181458 110181679 -33604776 + MIR SINE MIR 12 261 -1 603 245 53 0 chr12 110181941 110182092 -33604363 + MIR SINE MIR 48 206 -56 1495 190 45 3 chr12 110182450 110182740 -33603715 + AluJb SINE Alu 1 302 -10 647 208 15 12 chr12 110183219 110183350 -33603105 + L1MA4 LINE L1 5894 6025 -280 344 163 31 41 chr12 110183350 110183448 -33603007 + L1MB3 LINE L1 6087 6183 0 647 208 15 12 chr12 110183448 110183476 -33602979 + L1MA4 LINE L1 6025 6051 -254 342 290 112 47 chr12 110183528 110183742 -33602713 + MIR SINE MIR 12 239 -23 507 107 0 0 chr12 110183745 110183820 -33602635 + (CA)n Simple_repeat Simple_repeat 2 76 0 766 148 42 69 chr12 110184467 110184656 -33601799 + MER53 DNA DNA 5 188 -1 580 244 57 17 chr12 110185572 110185748 -33600707 + MER53 DNA DNA 1 183 -6 2253 98 0 0 chr12 110186278 110186575 -33599880 - AluSg SINE Alu -13 297 1 226 195 24 0 chr12 110186726 110186767 -33599688 - MER91 DNA MER1_type -3 187 146 2757 141 10 45 chr12 110187170 110187360 -33599095 + MLT1C LTR MaLR 1 196 -271 2032 86 4 0 chr12 110187360 110187629 -33598826 + AluSc SINE Alu 37 306 -3 2757 141 10 45 chr12 110187629 110187922 -33598533 + MLT1C LTR MaLR 196 467 0 348 330 43 27 chr12 110188380 110188568 -33597887 + MLT1K LTR MaLR 4 194 -394 303 311 83 15 chr12 110188785 110188917 -33597538 + MLT1K LTR MaLR 401 541 -47 3556 170 6 6 chr12 110188932 110189568 -33596887 - L1MB3 LINE L1 -7 6176 5541 2138 96 27 0 chr12 110189857 110190149 -33596306 - AluSp SINE Alu -13 300 1 1912 127 7 3 chr12 110190606 110190916 -33595539 + AluSx SINE Alu 1 311 0 1849 78 0 46 chr12 110191272 110191555 -33594900 - AluY SINE Alu -7 304 35 621 284 92 13 chr12 110192780 110193009 -33593446 - MIR SINE MIR 0 262 16 767 195 87 16 chr12 110193102 110193287 -33593168 - MLT1K LTR MaLR -17 571 374 933 196 193 63 chr12 110193474 110193836 -33592619 + MLT1J1 LTR MaLR 1 409 -37 187 333 13 13 chr12 110194172 110194250 -33592205 - L2 LINE L2 -6 3307 3230 280 208 0 0 chr12 110194870 110194918 -33591537 - L2 LINE L2 -12 3301 3254 532 266 212 0 chr12 110194939 110195123 -33591332 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr12 110196591 110196612 -33589843 + AT_rich Low_complexity Low_complexity 1 21 0 2151 115 0 0 chr12 110196676 110196988 -33589467 + AluSx SINE Alu 1 312 0 1245 171 26 9 chr12 110197005 110197260 -33589195 + AluJb SINE Alu 51 309 0 295 239 34 51 chr12 110199063 110199239 -33587216 + (CATATA)n Simple_repeat Simple_repeat 5 177 0 33 73 0 0 chr12 110199351 110199419 -33587036 + AT_rich Low_complexity Low_complexity 1 68 0 223 280 129 15 chr12 110199982 110200114 -33586341 + L2 LINE L2 1639 1785 -1529 1405 181 22 48 chr12 110200406 110200514 -33585941 + MER58B DNA MER1_type 32 141 -2279 1917 127 13 3 chr12 110200514 110200814 -33585641 + AluSx SINE Alu 1 303 -9 1405 181 22 48 chr12 110200814 110201019 -33585436 + MER58B DNA MER1_type 141 337 -4 434 253 39 113 chr12 110201156 110201195 -33585260 + MARNA DNA Mariner 280 320 -266 1645 92 5 0 chr12 110201195 110201440 -33585015 + AluSg/x SINE Alu 66 311 0 434 253 39 113 chr12 110201440 110201656 -33584799 + MARNA DNA Mariner 320 517 -69 516 275 171 24 chr12 110201742 110201953 -33584502 + MIR SINE MIR 2 243 -19 270 296 62 0 chr12 110201969 110202050 -33584405 + MIR SINE MIR 60 145 -117 203 179 0 0 chr12 110202193 110202232 -33584223 + A-rich Low_complexity Low_complexity 1 39 0 544 230 80 61 chr12 110202376 110202589 -33583866 + MIR SINE MIR 21 237 -25 185 241 167 0 chr12 110202555 110202609 -33583846 + L2 LINE L2 3208 3270 -2 * 288 184 105 79 chr12 110203382 110203496 -33582959 - MIR SINE MIR -59 149 33 21 57 0 0 chr12 110203927 110203962 -33582493 + AT_rich Low_complexity Low_complexity 1 35 0 282 316 71 53 chr12 110204395 110204443 -33582012 + L2 LINE L2 1271 1317 -1997 1848 171 49 17 chr12 110204443 110204793 -33581662 + THE1B LTR MaLR 4 364 0 282 316 71 53 chr12 110204793 110204969 -33581486 + L2 LINE L2 1317 1499 -1815 216 276 26 0 chr12 110204982 110205058 -33581397 + (CTAA)n Simple_repeat Simple_repeat 4 81 0 401 337 77 6 chr12 110205066 110205247 -33581208 + L2 LINE L2 1525 1718 -1596 257 259 54 36 chr12 110205268 110205380 -33581075 + L1MC5 LINE L1 7802 7915 -46 1158 272 110 104 chr12 110205405 110206182 -33580273 + L2 LINE L2 1712 2581 -732 583 180 0 0 chr12 110206182 110206271 -33580184 - AluJ/FLAM SINE Alu -219 93 5 1158 272 110 104 chr12 110206271 110206753 -33579702 + L2 LINE L2 2581 3058 -255 391 171 150 71 chr12 110206805 110206945 -33579510 + MLT1A1 LTR MaLR 1 151 -214 2587 95 46 0 chr12 110207403 110207751 -33578704 - THE1B LTR MaLR 0 364 1 677 309 43 17 chr12 110207803 110208036 -33578419 + MIR SINE MIR 10 248 -14 187 203 51 127 chr12 110208052 110208131 -33578324 + MIR SINE MIR 30 102 -106 526 231 107 30 chr12 110209033 110209202 -33577253 - L2 LINE L2 -14 3299 3118 1993 177 111 20 chr12 110209371 110209812 -33576643 + L1MC3 LINE L1 7298 7778 -7 5584 198 28 24 chr12 110210106 110210374 -33576081 - L1PBa LINE L1 -5225 1638 1372 2204 93 0 3 chr12 110210374 110210665 -33575790 - AluY SINE Alu -17 294 5 5584 198 28 24 chr12 110210665 110212387 -33574068 - L1PBa LINE L1 -5491 1372 558 195 295 63 32 chr12 110213016 110213111 -33573344 + L3 LINE CR1 660 757 -820 * 676 305 94 0 chr12 110213107 110213363 -33573092 + L3 LINE CR1 969 1248 -329 216 313 44 84 chr12 110213485 110213734 -33572721 + L2 LINE L2 3004 3242 -30 315 313 31 18 chr12 110214726 110214889 -33571566 + L1MC3 LINE L1 5815 5979 -1806 * 1378 143 91 71 chr12 110214767 110214977 -33571478 + L1MB7 LINE L1 5855 6074 -110 1831 169 0 0 chr12 110214977 110215261 -33571194 - AluJo SINE Alu -28 284 1 1378 143 91 71 chr12 110215261 110215358 -33571097 + L1MB7 LINE L1 6074 6168 -16 594 258 168 18 chr12 110215423 110215691 -33570764 - L1ME4a LINE L1 -43 6078 5733 1173 208 22 0 chr12 110215691 110215922 -33570533 - MER46A DNA MER2_type 0 236 1 594 258 168 18 chr12 110215922 110216041 -33570414 - L1ME4a LINE L1 -388 5733 5633 3859 188 91 38 chr12 110216052 110216985 -33569470 + Looper DNA T2_type 10 992 -566 833 268 34 8 chr12 110217076 110217315 -33569140 - MIR SINE MIR -1 261 17 2146 130 7 0 chr12 110217921 110218214 -33568241 - AluSx SINE Alu -17 295 1 3166 153 80 5 chr12 110219300 110219887 -33566568 - L1MB3 LINE L1 -2 6181 5551 465 206 4 59 chr12 110220656 110220849 -33565606 + MLT1I LTR MaLR 272 407 -2 371 301 59 33 chr12 110220871 110221024 -33565431 + MLT1K LTR MaLR 73 229 -359 838 220 22 16 chr12 110222235 110222417 -33564038 + L1ME LINE L1 5517 5699 -422 550 271 65 62 chr12 110224026 110224318 -33562137 - L1ME1 LINE L1 -4 6162 5870 1291 195 74 4 chr12 110224933 110225190 -33561265 + AluJo SINE Alu 6 280 -32 297 268 89 0 chr12 110225320 110225443 -33561012 - MIR SINE MIR -55 207 74 181 315 0 0 chr12 110225457 110225511 -33560944 + MIR SINE MIR 202 255 -7 936 193 221 9 chr12 110225558 110225642 -33560813 + Charlie1b DNA MER1_type 1 66 -2695 2157 165 54 48 chr12 110225642 110226144 -33560311 + MLT1D LTR MaLR 1 505 0 936 193 221 9 chr12 110226144 110226375 -33560080 + Charlie1b DNA MER1_type 66 383 -140 2049 114 0 4 chr12 110226382 110226654 -33559801 + AluSx SINE Alu 3 273 -39 23 0 0 0 chr12 110226677 110226700 -33559755 + AT_rich Low_complexity Low_complexity 1 23 0 263 171 0 57 chr12 110226700 110226770 -33559685 + Charlie1b DNA MER1_type 365 430 -93 251 239 42 0 chr12 110226814 110226885 -33559570 + Charlie1b DNA MER1_type 443 516 -7 271 330 96 4 chr12 110227555 110227774 -33558681 + L3 LINE CR1 1231 1553 -24 2237 131 0 3 chr12 110228104 110228417 -33558038 - AluSx SINE Alu 0 312 1 846 232 76 0 chr12 110228616 110228801 -33557654 - MER58A DNA MER1_type -16 208 10 489 266 51 9 chr12 110228848 110229049 -33557406 - L1MEc LINE L1 -3794 2421 2236 256 289 134 0 chr12 110229315 110229464 -33556991 - HAL1 LINE L1 -867 1640 1472 891 269 39 0 chr12 110229492 110229726 -33556729 - MIR SINE MIR -11 251 9 1953 239 75 56 chr12 110229791 110230494 -33555961 - L1MEc LINE L1 -4863 1342 621 1879 125 75 31 chr12 110230494 110230853 -33555602 + THE1C LTR MaLR 1 375 0 1953 239 75 56 chr12 110230853 110230937 -33555518 - L1MEc LINE L1 -5584 621 540 2195 128 0 3 chr12 110231192 110231498 -33554957 - AluSx SINE Alu -7 305 1 421 319 37 6 chr12 110231498 110231661 -33554794 - L1MEc LINE L1 -5950 255 88 478 256 8 30 chr12 110231745 110231878 -33554577 + MER5A DNA MER1_type 60 189 0 355 261 54 39 chr12 110232957 110233087 -33553368 + L2 LINE L2 3141 3272 0 371 235 20 10 chr12 110233194 110233292 -33553163 - L2 LINE L2 0 3272 3174 1280 146 82 5 chr12 110233364 110233583 -33552872 - MER46A DNA MER2_type 0 236 1 248 275 55 48 chr12 110233976 110234101 -33552354 - MIR SINE MIR -81 127 3 1886 158 3 10 chr12 110234599 110234903 -33551552 - AluJb SINE Alu -10 302 1 983 154 39 107 chr12 110236089 110236323 -33550132 - MER20 DNA MER1_type 0 219 2 2017 126 14 0 chr12 110236382 110236695 -33549760 - AluSx SINE Alu 0 317 1 277 150 300 0 chr12 110237299 110237379 -33549076 - L2 LINE L2 -1 3271 3168 250 335 130 10 chr12 110237394 110237594 -33548861 - L2 LINE L2 -464 2850 2627 475 298 84 5 chr12 110237785 110237920 -33548535 + MIR SINE MIR 10 170 -92 945 199 0 0 chr12 110237920 110238086 -33548369 + FRAM SINE Alu 1 166 0 475 298 84 5 chr12 110238086 110238165 -33548290 + MIR SINE MIR 170 241 -21 612 281 19 51 chr12 110239478 110239734 -33546721 - MIR SINE MIR -3 259 12 2277 73 10 3 chr12 110240639 110240927 -33545528 - AluY SINE Alu -19 292 3 306 304 63 26 chr12 110241117 110241308 -33545147 - MIR SINE MIR -44 218 21 784 251 169 18 chr12 110241715 110242046 -33544409 + MLT1K LTR MaLR 205 585 -3 22 56 0 0 chr12 110242813 110242849 -33543606 + AT_rich Low_complexity Low_complexity 1 36 0 1046 158 51 47 chr12 110243354 110243569 -33542886 - MER20 DNA MER1_type -3 216 1 1578 150 101 16 chr12 110243732 110244092 -33542363 + L1MC3 LINE L1 6288 7785 0 355 267 35 9 chr12 110244801 110244917 -33541538 - MIR3 SINE MIR -21 187 69 187 296 0 0 chr12 110245011 110245055 -33541400 - MIR SINE MIR 0 262 219 2707 81 0 8 chr12 110245189 110245547 -33540908 - THE1A LTR MaLR 0 355 1 8936 129 36 44 chr12 110245547 110247313 -33539142 - THE1A-int LTR MaLR 0 1651 1 2698 96 6 0 chr12 110247313 110247666 -33538789 - THE1A LTR MaLR 0 355 1 408 270 0 0 chr12 110247703 110247818 -33538637 - MIR SINE MIR -31 231 117 3154 164 53 80 chr12 110247878 110248623 -33537832 + L1MD2 LINE L1 5569 6292 -67 1536 175 34 10 chr12 110248623 110248914 -33537541 - AluJb SINE Alu -14 298 1 3154 164 53 80 chr12 110248914 110248981 -33537474 + L1MD2 LINE L1 6292 6359 0 233 280 121 7 chr12 110249414 110249547 -33536908 + MIR SINE MIR 15 169 -53 636 106 0 0 chr12 110249752 110249846 -33536609 + (CATCT)n Simple_repeat Simple_repeat 4 97 0 183 178 20 50 chr12 110250476 110250577 -33535878 + (CCG)n Simple_repeat Simple_repeat 3 100 0 189 142 38 57 chr12 110250685 110250791 -33535664 + G-rich Low_complexity Low_complexity 3 106 0 327 307 0 51 chr12 110251770 110251851 -33534604 - MIR SINE MIR -54 208 135 982 173 151 58 chr12 110251851 110252001 -33534454 + MER2 DNA MER2_type 2 137 -207 1927 155 0 3 chr12 110252001 110252297 -33534158 - AluJo SINE Alu -17 295 1 982 173 151 58 chr12 110252297 110252458 -33533997 + MER2 DNA MER2_type 137 342 -2 327 307 0 51 chr12 110252458 110252513 -33533942 - MIR SINE MIR -127 135 79 1321 186 105 85 chr12 110254130 110254197 -33532258 + L1MC4 LINE L1 7444 7508 -534 2007 172 0 0 chr12 110254197 110254499 -33531956 + AluJb SINE Alu 1 302 -10 1321 186 105 85 chr12 110254499 110254936 -33531519 + L1MC4 LINE L1 7508 7958 -84 810 128 0 0 chr12 110254952 110255069 -33531386 + FLAM_C SINE Alu 11 127 -16 301 253 11 0 chr12 110255090 110255177 -33531278 + L1MC4 LINE L1 7955 8042 0 2337 108 0 0 chr12 110255224 110255529 -33530926 + AluSx SINE Alu 1 305 -7 437 265 93 6 chr12 110256988 110257150 -33529305 - MIR SINE MIR -40 222 47 574 324 167 18 chr12 110258418 110259101 -33527354 + L2 LINE L2 1826 2610 -704 181 304 137 10 chr12 110259642 110259744 -33526711 + MIR3 SINE MIR 91 205 -3 201 74 0 0 chr12 110260338 110260365 -33526090 + (GA)n Simple_repeat Simple_repeat 2 28 0 1082 176 56 23 chr12 110261154 110261370 -33525085 + AluJo SINE Alu 86 308 -4 182 301 68 48 chr12 110261602 110261705 -33524750 - L2 LINE L2 -26 3287 3183 355 261 54 39 chr12 110262340 110262470 -33523985 + L2 LINE L2 3141 3272 0 355 232 20 20 chr12 110262577 110262676 -33523779 - L2 LINE L2 0 3272 3174 1254 154 77 5 chr12 110262746 110262966 -33523489 - MER46A DNA MER2_type 0 236 1 248 276 55 48 chr12 110263359 110263484 -33522971 - MIR SINE MIR -81 127 3 2187 129 15 73 chr12 110264344 110264756 -33521699 - MLT1B LTR MaLR -2 388 1 1195 139 28 42 chr12 110265631 110265846 -33520609 + MER20 DNA MER1_type 2 213 -6 1623 145 42 35 chr12 110265865 110266154 -33520301 - AluJo SINE Alu -21 291 1 2175 109 3 7 chr12 110266698 110266991 -33519464 + AluSx SINE Alu 1 292 -20 618 276 27 50 chr12 110267891 110268152 -33518303 + MIR SINE MIR 5 259 -3 278 362 35 11 chr12 110268899 110269073 -33517382 + CT-rich Low_complexity Low_complexity 1 178 0 2112 140 14 75 chr12 110269639 110270052 -33516403 + MLT1B LTR MaLR 1 388 -2 478 291 33 29 chr12 110270293 110270503 -33515952 + L2 LINE L2 2629 2839 -475 220 313 71 10 chr12 110270797 110270896 -33515559 + L2 LINE L2 3168 3272 0 206 93 163 0 chr12 110271567 110271610 -33514845 - MIR SINE MIR -124 138 89 1148 224 138 60 chr12 110271679 110272178 -33514277 + MLT1H LTR MaLR 12 549 0 601 247 55 46 chr12 110272346 110272565 -33513890 - MIR SINE MIR -12 250 30 2212 123 0 0 chr12 110272718 110273026 -33513429 + AluSx SINE Alu 1 308 -4 1140 78 0 7 chr12 110273514 110273655 -33512800 - AluSq/x SINE Alu -171 142 3 771 129 30 8 chr12 110273866 110273998 -33512457 - LTR49 LTR ERV1 0 595 461 353 264 18 18 chr12 110273989 110274099 -33512356 - LTR48B LTR ERV1 -155 489 380 * 1207 117 0 0 chr12 110274099 110274253 -33512202 - AluSx SINE Alu -158 154 1 1074 185 43 5 chr12 110274289 110274500 -33511955 - MER20 DNA MER1_type 0 219 1 1169 86 0 0 chr12 110274723 110274862 -33511593 - AluSc SINE Alu -170 139 1 540 0 0 0 chr12 110275767 110275827 -33510628 + (TG)n Simple_repeat Simple_repeat 2 61 0 664 262 79 69 chr12 110276584 110277261 -33509194 - L1ME4a LINE L1 -3 6118 5447 2105 115 3 3 chr12 110277287 110277596 -33508859 - AluSx SINE Alu 0 309 1 520 165 21 0 chr12 110277597 110277694 -33508761 + MER53 DNA DNA 35 133 -56 * 638 151 55 27 chr12 110277690 110277836 -33508619 - MER53 DNA DNA -34 155 6 594 192 72 8 chr12 110278509 110278634 -33507821 - FLAM_A SINE Alu 0 133 1 2109 158 0 0 chr12 110278860 110279170 -33507285 + AluSx SINE Alu 1 310 -2 2094 141 0 3 chr12 110279492 110279790 -33506665 + AluJb SINE Alu 1 297 -15 777 237 53 18 chr12 110280227 110280455 -33506000 + MIR SINE MIR 6 241 -21 816 257 108 53 chr12 110280924 110281302 -33505153 - MLT1J LTR MaLR -82 429 31 1861 105 23 8 chr12 110281326 110281584 -33504871 - AluSq SINE Alu -13 300 39 2429 90 3 0 chr12 110282846 110283147 -33503308 - AluSp SINE Alu -11 302 1 702 252 69 20 chr12 110283875 110284121 -33502334 + MIR SINE MIR 5 262 0 305 257 164 29 chr12 110284664 110284804 -33501651 + MIR SINE MIR 83 241 -21 253 216 108 39 chr12 110284805 110284907 -33501548 + MLT1I LTR MaLR 2 110 -299 703 199 133 24 chr12 110284911 110285077 -33501378 + MLT1I LTR MaLR 214 397 -12 203 278 143 32 chr12 110285209 110285335 -33501120 + MIR SINE MIR 51 190 -72 211 132 26 0 chr12 110286611 110286649 -33499806 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 346 293 10 0 chr12 110286860 110286959 -33499496 + CT-rich Low_complexity Low_complexity 2 101 0 293 363 55 0 chr12 110286963 110287109 -33499346 - L2 LINE L2 0 3272 3119 2395 97 0 0 chr12 110287818 110288126 -33498329 - AluSc SINE Alu -1 308 1 212 296 113 26 chr12 110288645 110288760 -33497695 - L2 LINE L2 0 3272 3148 363 303 91 17 chr12 110288773 110288948 -33497507 - MIR SINE MIR -18 244 57 410 323 219 9 chr12 110290233 110291214 -33495241 - L2 LINE L2 -23 3249 2037 356 296 148 32 chr12 110292409 110292693 -33493762 + L2 LINE L2 2282 2598 -716 2690 160 5 0 chr12 110292718 110293167 -33493288 - L1MC3 LINE L1 -1910 5875 5425 337 224 69 9 chr12 110293392 110293508 -33492947 + MER20B DNA MER1_type 538 660 -123 477 170 0 50 chr12 110293748 110293848 -33492607 - MIR3 SINE MIR -13 195 101 2935 6 0 0 chr12 110293940 110294251 -33492204 - AluYa5 SINE Alu 0 311 1 360 254 98 16 chr12 110294739 110294861 -33491594 - L2 LINE L2 -6 3307 3176 308 230 206 43 chr12 110295370 110295579 -33490876 + MIR SINE MIR 8 250 -12 1555 188 82 0 chr12 110295657 110295939 -33490516 + AluJb SINE Alu 2 306 -6 233 116 0 23 chr12 110296522 110296565 -33489890 + (TAA)n Simple_repeat Simple_repeat 2 43 0 661 186 27 22 chr12 110296655 110296810 -33489645 - MIR SINE MIR -57 151 46 664 260 31 63 chr12 110297437 110297691 -33488764 - MIR SINE MIR 0 262 17 981 248 97 42 chr12 110297747 110298202 -33488253 + L2 LINE L2 2326 2805 -509 230 338 13 26 chr12 110298228 110298379 -33488076 + L2 LINE L2 2869 3017 -296 654 287 91 63 chr12 110298389 110298818 -33487637 + MLT1J2 LTR MaLR 2 442 -8 451 321 43 16 chr12 110298876 110299063 -33487392 + L2 LINE L2 3122 3313 0 838 294 44 23 chr12 110299126 110299514 -33486941 + L2 LINE L2 2913 3308 -5 1031 135 11 0 chr12 110299558 110299736 -33486719 + GA-rich Low_complexity Low_complexity 1 180 0 330 132 0 0 chr12 110299736 110299789 -33486666 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 205 261 0 72 chr12 110299836 110299905 -33486550 + polypyrimidine Low_complexity Low_complexity 2 65 0 370 244 22 28 chr12 110300335 110300515 -33485940 + GA-rich Low_complexity Low_complexity 2 180 0 285 284 15 0 chr12 110300519 110300586 -33485869 + polypurine Low_complexity Low_complexity 3 70 0 456 202 28 32 chr12 110300587 110300835 -33485620 + GA-rich Low_complexity Low_complexity 1 247 0 586 129 0 32 chr12 110300839 110300963 -33485492 + (GGGGA)n Simple_repeat Simple_repeat 2 121 0 190 318 48 0 chr12 110301294 110301357 -33485098 + L2 LINE L2 3189 3254 -18 2079 87 32 14 chr12 110301479 110301794 -33484661 + AluY SINE Alu 1 320 0 808 273 127 50 chr12 110301883 110301956 -33484499 + L2 LINE L2 2639 2705 -608 1535 180 18 21 chr12 110301956 110302239 -33484216 + AluJo SINE Alu 1 282 -30 808 273 127 50 chr12 110302239 110302776 -33483679 + L2 LINE L2 2705 3294 -19 1036 207 8 16 chr12 110303164 110303410 -33483045 - L1MB7 LINE L1 -3 6181 5938 766 163 32 0 chr12 110303928 110304051 -33482404 - FLAM_A SINE Alu -6 127 1 2506 63 0 13 chr12 110304223 110304523 -33481932 - AluY SINE Alu -15 296 1 224 241 12 96 chr12 110305518 110305601 -33480854 + MIR3 SINE MIR 133 208 0 1302 283 87 40 chr12 110306750 110307301 -33479154 + MLT1K LTR MaLR 12 588 0 507 275 144 0 chr12 110307819 110307979 -33478476 - MER5A DNA MER1_type 0 189 7 499 261 41 51 chr12 110307999 110308194 -33478261 + MIR SINE MIR 24 216 -46 832 179 151 6 chr12 110308225 110308404 -33478051 - MER20B DNA MER1_type -14 205 1 415 321 25 6 chr12 110310454 110310613 -33475842 - MIR SINE MIR -77 185 24 497 184 0 0 chr12 110310996 110311094 -33475361 - L1MB7 LINE L1 -933 5411 5314 * 6153 174 21 18 chr12 110311085 110311480 -33474975 - L1PA15 LINE L1 -8 6157 5765 2074 145 0 0 chr12 110311480 110311776 -33474679 - AluSx SINE Alu -14 298 3 6153 174 21 18 chr12 110311776 110312867 -33473588 - L1PA15 LINE L1 -400 5765 4659 1784 222 32 26 chr12 110312867 110313331 -33473124 + MLT1C LTR MaLR 1 467 0 6153 174 21 18 chr12 110313331 110313911 -33472544 - L1PA15 LINE L1 -1506 4659 4082 828 341 41 32 chr12 110313906 110314397 -33472058 + L2 LINE L2 2563 3051 -262 * 317 297 51 51 chr12 110314674 110314869 -33471586 + L2 LINE L2 2856 3050 -222 341 243 45 18 chr12 110315270 110315381 -33471074 - MIR SINE MIR -116 146 33 238 258 140 44 chr12 110315642 110315871 -33470584 - L1ME4a LINE L1 -12 6109 5859 2009 138 0 24 chr12 110315872 110316169 -33470286 + AluSx SINE Alu 2 291 -21 210 227 216 23 chr12 110316183 110316271 -33470184 - L2 LINE L2 -25 3288 3184 429 250 161 12 chr12 110316451 110316619 -33469836 + MIR SINE MIR 2 194 -68 816 228 73 23 chr12 110316621 110316880 -33469575 - MER74B LTR ERVL 0 622 351 939 171 28 74 chr12 110316880 110317097 -33469358 - AluJb SINE Alu -19 293 87 525 153 12 0 chr12 110317097 110317182 -33469273 - MER74B LTR ERVL -263 359 274 437 245 77 35 chr12 110317197 110317340 -33469115 - MER74A LTR ERVL -409 149 1 1116 124 0 0 chr12 110318565 110318632 -33467823 + (GGAA)n Simple_repeat Simple_repeat 1 245 0 1116 124 0 0 chr12 110318632 110318810 -33467645 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 237 132 0 0 chr12 110319324 110319362 -33467093 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 237 380 83 0 chr12 110319403 110319524 -33466931 + MIR3 SINE MIR 53 183 -25 2078 123 4 0 chr12 110319715 110319992 -33466463 + AluSx SINE Alu 2 279 -33 619 211 13 0 chr12 110319993 110320149 -33466306 + GA-rich Low_complexity Low_complexity 1 158 0 26 64 0 0 chr12 110321924 110321971 -33464484 + AT_rich Low_complexity Low_complexity 1 47 0 1722 143 44 7 chr12 110322078 110322350 -33464105 - AluJo SINE Alu -30 282 1 181 327 0 0 chr12 110322386 110322441 -33464014 - MIR SINE MIR -22 240 186 2456 96 0 0 chr12 110322441 110322754 -33463701 + AluSq SINE Alu 1 313 0 2273 80 7 30 chr12 110323321 110323622 -33462833 - AluSg SINE Alu -16 294 1 1248 172 0 5 chr12 110323989 110324198 -33462257 + AluSg/x SINE Alu 89 296 -16 338 288 17 17 chr12 110324220 110324338 -33462117 + L1ME LINE L1 5536 5653 -468 456 272 53 0 chr12 110324671 110324785 -33461670 - MIR SINE MIR -134 128 9 1810 238 72 52 chr12 110324850 110325553 -33460902 - L1MEd LINE L1 -4863 1256 535 1753 139 78 33 chr12 110325553 110325912 -33460543 + THE1C LTR MaLR 1 375 0 1810 238 72 52 chr12 110325912 110325976 -33460479 - L1MEd LINE L1 -5584 535 474 1132 221 49 46 chr12 110326664 110326971 -33459484 - MSTD LTR MaLR 0 396 89 1787 172 3 0 chr12 110326972 110327262 -33459193 - AluSx SINE Alu -15 297 7 1783 183 0 10 chr12 110328063 110328358 -33458097 - AluJb SINE Alu -20 292 1 427 317 85 18 chr12 110328723 110328947 -33457508 + MIR SINE MIR 21 259 -3 413 241 28 0 chr12 110329110 110329218 -33457237 + MARNA DNA Mariner 356 466 -120 37 23 0 0 chr12 110329963 110330007 -33456448 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 110330068 110330100 -33456355 + AT_rich Low_complexity Low_complexity 1 32 0 40 108 0 0 chr12 110330214 110330380 -33456075 + AT_rich Low_complexity Low_complexity 1 166 0 482 223 70 61 chr12 110330762 110331089 -33455366 + L1MCa LINE L1 1204 1533 -5007 836 161 7 0 chr12 110331175 110331312 -33455143 - FLAM_C SINE Alu 0 143 6 651 215 20 3 chr12 110331321 110331491 -33454964 + L1MCa LINE L1 1843 2052 -4532 2159 126 0 0 chr12 110331493 110331786 -33454669 + AluSg SINE Alu 1 293 -17 637 231 52 14 chr12 110331796 110332008 -33454447 + L1MCa LINE L1 2372 2591 -4130 2225 134 0 3 chr12 110332507 110332820 -33453635 - AluSx SINE Alu 0 312 1 649 299 70 0 chr12 110333003 110333204 -33453251 - MER58A DNA MER1_type 0 224 10 489 272 51 30 chr12 110333246 110333449 -33453006 - L1MEc LINE L1 -3791 2386 2167 190 240 80 120 chr12 110334915 110335090 -33451365 + MER5B DNA MER1_type 6 173 -5 729 189 120 40 chr12 110335195 110335370 -33451085 + MER5A DNA MER1_type 1 189 0 202 257 248 0 chr12 110336180 110336285 -33450170 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr12 110336290 110336353 -33450102 + CT-rich Low_complexity Low_complexity 2 64 0 324 0 0 0 chr12 110336353 110336389 -33450066 + (CA)n Simple_repeat Simple_repeat 2 37 0 95 79 0 0 chr12 110336605 110336819 -33449636 + GC_rich Low_complexity Low_complexity 1 214 0 21 36 0 0 chr12 110337327 110337355 -33449100 + GC_rich Low_complexity Low_complexity 1 28 0 328 378 68 37 chr12 110337726 110338136 -33448319 - L3 LINE CR1 -509 1068 646 40 59 0 0 chr12 110338250 110338318 -33448137 + GC_rich Low_complexity Low_complexity 1 68 0 5895 158 39 25 chr12 110338947 110340046 -33446409 - L1P LINE L1 -4973 1173 60 511 176 0 14 chr12 110340267 110340409 -33446046 + GA-rich Low_complexity Low_complexity 2 141 0 2145 122 3 0 chr12 110340550 110340837 -33445618 - AluSx SINE Alu -24 288 1 462 271 26 2 chr12 110340837 110340977 -33445478 + L1ME1 LINE L1 5578 5689 -477 1467 199 104 62 chr12 110340999 110341549 -33444906 - LTR24B LTR ERV1 -7 569 1 1015 202 62 29 chr12 110341549 110341821 -33444634 + L1ME1 LINE L1 5720 6000 -166 756 157 85 0 chr12 110341826 110341979 -33444476 + L1MA10 LINE L1 6167 6332 -2 1364 88 0 0 chr12 110342042 110342212 -33444243 - AluSx SINE Alu -16 296 127 429 130 56 0 chr12 110342215 110342377 -33444078 + (TA)n Simple_repeat Simple_repeat 2 172 0 834 88 0 88 chr12 110342377 110342514 -33443941 - AluSx SINE Alu -188 125 1 452 134 0 0 chr12 110343670 110343737 -33442718 + MSTB1 LTR MaLR 353 419 -13 477 301 136 43 chr12 110343748 110344335 -33442120 + L2 LINE L2 2664 3311 -2 22 0 0 0 chr12 110344365 110344387 -33442068 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr12 110344599 110344641 -33441814 + AT_rich Low_complexity Low_complexity 1 42 0 1656 182 22 0 chr12 110344641 110344916 -33441539 - AluJo SINE Alu -31 281 1 2071 133 0 7 chr12 110344937 110345238 -33441217 - AluSx SINE Alu -13 299 1 246 256 120 29 chr12 110345249 110345415 -33441040 - MIR3 SINE MIR -66 196 15 2408 148 73 2 chr12 110345596 110345994 -33440461 + MSTB LTR MaLR 1 426 0 376 256 159 0 chr12 110346061 110346237 -33440218 - L1MC4a LINE L1 -1904 5904 5701 971 269 77 9 chr12 110346917 110347241 -33439214 + L2 LINE L2 2433 2778 -536 657 261 164 51 chr12 110347476 110347867 -33438588 - L1ME4a LINE L1 -260 5861 5427 2040 129 3 3 chr12 110347872 110348181 -33438274 - AluSx SINE Alu 0 309 1 330 186 0 0 chr12 110348995 110349054 -33437401 - L1MB8 LINE L1 -4 6174 6116 1544 196 0 14 chr12 110349068 110349380 -33437075 - AluJo SINE Alu 0 308 1 631 89 33 0 chr12 110349383 110349473 -33436982 - MSTD LTR MaLR -303 93 1 1582 172 11 21 chr12 110349540 110349825 -33436630 + AluJb SINE Alu 1 282 -30 252 0 0 0 chr12 110349827 110349855 -33436600 + (CA)n Simple_repeat Simple_repeat 1 28 0 246 345 64 90 chr12 110350588 110351023 -33435432 - L2 LINE L2 -18 3254 2831 1937 127 36 26 chr12 110351205 110351513 -33434942 + AluSx SINE Alu 1 311 -1 225 319 26 26 chr12 110351688 110351804 -33434651 - L2 LINE L2 -829 2485 2370 1219 185 24 5 chr12 110352150 110352361 -33434094 + MER20 DNA MER1_type 1 215 -4 2340 113 3 3 chr12 110352516 110352827 -33433628 - AluSx SINE Alu -1 311 1 23 68 0 0 chr12 110352900 110352944 -33433511 + AT_rich Low_complexity Low_complexity 1 44 0 508 267 102 29 chr12 110353645 110353851 -33432604 + MIR SINE MIR 5 225 -37 2501 81 3 0 chr12 110354650 110354958 -33431497 - AluSp SINE Alu -4 309 1 1725 196 3 16 chr12 110355151 110355467 -33430988 + AluJb SINE Alu 1 312 0 208 231 138 0 chr12 110355845 110355910 -33430545 + MIR SINE MIR 116 189 -73 2067 131 7 0 chr12 110355910 110356200 -33430255 + AluJb SINE Alu 3 294 -18 1736 79 5 5 chr12 110357735 110357951 -33428504 + AluSx SINE Alu 1 216 -96 241 272 3 38 chr12 110358410 110358566 -33427889 - L1MC4 LINE L1 -1339 6983 1995 429 20 0 0 chr12 110358585 110358635 -33427820 + (CA)n Simple_repeat Simple_repeat 2 51 0 234 238 0 0 chr12 110358847 110358889 -33427566 + (CA)n Simple_repeat Simple_repeat 2 43 0 2139 112 13 23 chr12 110358984 110359289 -33427166 - AluSx SINE Alu -10 302 1 330 261 28 47 chr12 110360602 110360786 -33425669 - L1M4 LINE L1 -1155 4991 4810 2183 133 0 16 chr12 110360786 110361103 -33425352 - AluSx SINE Alu 0 312 1 330 261 28 47 chr12 110361103 110361129 -33425326 - L1M4 LINE L1 -1336 4810 4785 344 246 42 84 chr12 110361140 110361282 -33425173 + LTR67 LTR ERVL 4 139 -418 2463 181 109 10 chr12 110361282 110361768 -33424687 + MLT1F LTR MaLR 1 534 -8 367 263 82 35 chr12 110361793 110362025 -33424430 - L1M4 LINE L1 -1650 4496 4254 581 171 200 7 chr12 110362399 110362539 -33423916 - L1ME1 LINE L1 0 6166 6000 787 121 57 0 chr12 110362612 110362736 -33423719 + AluJ SINE Alu 1 131 -171 2095 116 27 7 chr12 110362771 110363072 -33423383 - AluSx SINE Alu -5 307 1 923 189 6 6 chr12 110363088 110363247 -33423208 + AluJ SINE Alu 131 289 -23 37 0 0 0 chr12 110363247 110363284 -33423171 + AT_rich Low_complexity Low_complexity 1 37 0 372 309 36 0 chr12 110363295 110363405 -33423050 + L2 LINE L2 3200 3313 0 2352 86 0 3 chr12 110363924 110364225 -33422230 - AluSq SINE Alu -13 300 1 432 147 0 27 chr12 110368963 110369038 -33417417 - MLT1I LTR MaLR -2 407 335 * 1032 202 79 0 chr12 110369029 110369232 -33417223 + MER58A DNA MER1_type 6 224 0 550 290 59 65 chr12 110369245 110369552 -33416903 - MLT1I LTR MaLR -104 305 1 205 328 62 16 chr12 110370312 110370376 -33416079 + MIR3 SINE MIR 90 156 -52 2364 96 3 0 chr12 110370655 110370958 -33415497 - AluSp SINE Alu -9 304 1 189 219 0 0 chr12 110371801 110371833 -33414622 + L2 LINE L2 3194 3225 -88 205 294 118 0 chr12 110372068 110372136 -33414319 + L2 LINE L2 2182 2257 -1057 245 191 0 0 chr12 110372137 110372179 -33414276 - MER58B DNA MER1_type 0 341 300 534 181 110 16 chr12 110372208 110372317 -33414138 - MER58B DNA MER1_type -2103 317 193 1552 154 81 32 chr12 110372317 110372602 -33413853 + AluJb SINE Alu 1 299 -13 534 181 110 16 chr12 110372602 110372619 -33413836 - MER58B DNA MER1_type -2227 193 179 282 368 26 9 chr12 110372661 110372775 -33413680 + L2 LINE L2 2251 2366 -948 260 105 0 0 chr12 110372983 110373016 -33413439 + Alu SINE Alu 1 33 -269 755 227 130 11 chr12 110373016 110373201 -33413254 + MER3 DNA MER1_type 3 209 0 291 191 0 0 chr12 110373161 110373208 -33413247 - MER3 DNA MER1_type -122 87 41 * 2361 79 3 13 chr12 110373843 110374146 -33412309 + AluSx SINE Alu 1 300 -12 181 175 12 38 chr12 110374321 110374401 -33412054 + GA-rich Low_complexity Low_complexity 1 78 0 1662 184 13 17 chr12 110375056 110375355 -33411100 - AluJo SINE Alu -9 303 6 707 232 106 24 chr12 110375880 110376126 -33410329 + Charlie4a DNA MER1_type 239 504 -4 1154 137 100 37 chr12 110376593 110376864 -33409591 - MER33 DNA MER1_type -4 320 33 242 209 209 0 chr12 110376832 110376899 -33409556 - MER3 DNA MER1_type -97 112 32 * 185 266 16 31 chr12 110378887 110378951 -33407504 + MIR SINE MIR 94 156 -106 23 33 0 0 chr12 110379385 110379415 -33407040 + AT_rich Low_complexity Low_complexity 1 30 0 2213 107 3 0 chr12 110380514 110380812 -33405643 - AluSg SINE Alu -11 299 1 733 188 88 53 chr12 110381123 110381293 -33405162 + FAM SINE Alu 1 40 -9 805 163 8 0 chr12 110381762 110381885 -33404570 + AluJ SINE Alu 1 124 -188 1246 179 0 0 chr12 110381903 110382110 -33404345 + MER2 DNA MER2_type 1 207 -138 904 211 35 0 chr12 110382198 110382369 -33404086 + MER8 DNA MER2_type 1 177 -62 231 138 224 17 chr12 110382396 110382454 -33404001 - Tigger2 DNA MER2_type -2645 73 4 267 306 0 0 chr12 110383273 110383381 -33403074 + GA-rich Low_complexity Low_complexity 1 108 0 1892 87 8 8 chr12 110384000 110384253 -33402202 - AluSg1 SINE Alu -18 291 39 533 233 10 10 chr12 110384267 110384370 -33402085 + AluJ SINE Alu 120 222 -90 400 287 37 0 chr12 110384425 110384533 -33401922 + MLT1F1 LTR MaLR 14 125 -442 1202 161 220 50 chr12 110384533 110384911 -33401544 + L1MD3 LINE L1 7404 7845 -150 1076 103 45 0 chr12 110384914 110385069 -33401386 - AluSx SINE Alu -21 291 130 435 126 57 0 chr12 110385074 110385233 -33401222 + (TA)n Simple_repeat Simple_repeat 1 168 0 851 92 0 85 chr12 110385233 110385374 -33401081 - AluSx SINE Alu -183 129 1 454 134 0 0 chr12 110386530 110386597 -33399858 + MSTB1 LTR MaLR 353 419 -13 598 301 136 43 chr12 110386608 110387195 -33399260 + L2 LINE L2 2664 3311 -2 22 0 0 0 chr12 110387225 110387247 -33399208 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr12 110387459 110387501 -33398954 + AT_rich Low_complexity Low_complexity 1 42 0 1642 182 22 0 chr12 110387501 110387776 -33398679 - AluJo SINE Alu -31 281 1 2069 130 0 7 chr12 110387797 110388098 -33398357 - AluSx SINE Alu -13 299 1 283 256 120 29 chr12 110388109 110388275 -33398180 - MIR3 SINE MIR -66 196 15 2444 153 87 2 chr12 110388456 110388849 -33397606 + MSTB LTR MaLR 1 426 0 397 256 159 0 chr12 110388916 110389092 -33397363 - L1MC4a LINE L1 -1904 5904 5701 1424 274 99 15 chr12 110389772 110390328 -33396127 + L2 LINE L2 2433 3036 -277 4123 144 41 14 chr12 110390333 110391039 -33395416 + L1MB8 LINE L1 5372 6096 -82 180 219 293 12 chr12 110391047 110391129 -33395326 + L2 LINE L2 3209 3313 0 188 273 61 15 chr12 110391131 110391197 -33395258 + L2 LINE L2 3204 3272 0 889 286 102 9 chr12 110392562 110392894 -33393561 + LTR16A LTR ERVL 88 450 0 1354 178 189 59 chr12 110393754 110393897 -33392558 - L1MD3 LINE L1 0 7995 7872 1984 108 47 0 chr12 110393897 110394175 -33392280 + AluSx SINE Alu 1 291 -21 1354 178 189 59 chr12 110394175 110394555 -33391900 - L1MD3 LINE L1 -123 7872 7404 372 284 37 9 chr12 110394555 110394664 -33391791 - MLT1F1 LTR MaLR -442 125 14 492 252 10 10 chr12 110394719 110394822 -33391633 - AluJo SINE Alu -90 222 120 1951 81 8 8 chr12 110394836 110395094 -33391361 + AluSg1 SINE Alu 39 296 -13 267 306 0 0 chr12 110395707 110395815 -33390640 + CT-rich Low_complexity Low_complexity 1 108 0 225 136 220 34 chr12 110396635 110396694 -33389761 + Tigger2 DNA MER2_type 4 73 -2645 904 211 35 0 chr12 110396721 110396892 -33389563 - MER8 DNA MER2_type -62 177 1 380 105 0 0 chr12 110396980 110397037 -33389418 - MER2 DNA MER2_type -138 207 151 207 182 0 23 chr12 110397175 110397189 -33389266 + (TTCA)n Simple_repeat Simple_repeat 1 14 -29 1861 99 121 11 chr12 110397189 110397462 -33388993 - AluSx SINE Alu -9 303 1 207 182 0 23 chr12 110397462 110397491 -33388964 + (TTCA)n Simple_repeat Simple_repeat 14 43 0 1785 115 70 11 chr12 110397491 110397761 -33388694 - AluSx SINE Alu -26 286 1 802 177 5 81 chr12 110397764 110397962 -33388493 - L1MC4a LINE L1 -607 5559 5377 6255 115 112 25 chr12 110398053 110398925 -33387530 + Tigger3b DNA MER2_type 1 992 -2036 2010 107 3 28 chr12 110398925 110399242 -33387213 - AluSx SINE Alu 0 310 1 6255 115 112 25 chr12 110399242 110399475 -33386980 + Tigger3b DNA MER2_type 992 1203 -28 2045 240 152 22 chr12 110399481 110399841 -33386614 - L1MC4a LINE L1 -772 5394 5082 2604 170 65 7 chr12 110399841 110400300 -33386155 + MER66B LTR ERV1 1 486 0 2045 240 152 22 chr12 110400300 110400457 -33385998 - L1MC4a LINE L1 -1084 5082 4947 2150 126 0 7 chr12 110400457 110400758 -33385697 - AluSx SINE Alu -13 299 1 2045 240 152 22 chr12 110400758 110401244 -33385211 - L1MC4a LINE L1 -1219 4947 4226 1823 90 126 11 chr12 110401523 110401800 -33384655 - AluSg1 SINE Alu 0 309 1 273 216 0 0 chr12 110402133 110402184 -33384271 - L2 LINE L2 -1 3312 3262 441 292 0 35 chr12 110402299 110402443 -33384012 + MLT1I LTR MaLR 251 389 -20 263 197 0 66 chr12 110402799 110402860 -33383595 - MIR SINE MIR -61 147 91 2314 100 3 0 chr12 110404839 110405139 -33381316 - AluSx SINE Alu -11 301 1 2022 139 20 0 chr12 110405203 110405506 -33380949 - AluSq SINE Alu -4 309 1 1207 87 7 0 chr12 110406228 110406378 -33380077 + AluSq/x SINE Alu 1 151 -161 833 241 76 34 chr12 110406484 110406720 -33379735 - MIR SINE MIR -15 247 2 735 326 181 19 chr12 110406724 110407260 -33379195 + L3 LINE CR1 472 1094 -483 1831 166 7 7 chr12 110407577 110407872 -33378583 + AluJo SINE Alu 1 295 -17 1211 119 0 31 chr12 110407966 110408160 -33378295 + AluJo SINE Alu 123 310 -2 1452 210 74 7 chr12 110408248 110408558 -33377897 - MER2 DNA MER2_type -1 344 14 2139 118 20 3 chr12 110408662 110408967 -33377488 + AluSg SINE Alu 1 310 0 241 261 29 14 chr12 110409240 110409309 -33377146 - MIR3 SINE MIR -40 168 99 2129 118 0 0 chr12 110409508 110409797 -33376658 - AluSg SINE Alu -21 289 1 2297 97 3 3 chr12 110410467 110410765 -33375690 - AluSp SINE Alu -15 298 1 340 186 0 0 chr12 110411579 110411638 -33374817 - L1MB8 LINE L1 -4 6174 6116 1522 200 0 14 chr12 110411652 110411961 -33374494 - AluJo SINE Alu 0 305 1 2570 57 0 16 chr12 110412070 110412385 -33374070 + AluY SINE Alu 2 311 0 21 0 0 0 chr12 110412927 110412948 -33373507 + AT_rich Low_complexity Low_complexity 1 21 0 2052 98 0 51 chr12 110413050 110413197 -33373258 + AluSx SINE Alu 1 126 -179 2268 105 0 0 chr12 110413197 110413492 -33372963 + AluSx SINE Alu 1 295 -17 2052 98 0 51 chr12 110413492 110413664 -33372791 + AluSx SINE Alu 126 305 0 299 279 92 108 chr12 110413730 110413970 -33372485 - L2 LINE L2 -1 3271 3036 275 278 82 31 chr12 110414009 110414106 -33372349 + L2 LINE L2 3180 3281 -32 461 261 172 56 chr12 110414189 110414549 -33371906 + MLT1J LTR MaLR 91 492 -19 1493 141 13 9 chr12 110414736 110414963 -33371492 + MER30 DNA MER1_type 3 230 0 2244 236 225 25 chr12 110415129 110415533 -33370922 + L2 LINE L2 1983 2305 -1008 2142 130 0 0 chr12 110415533 110415832 -33370623 - AluSx SINE Alu -13 299 1 2244 236 225 25 chr12 110415832 110416537 -33369918 + L2 LINE L2 2305 3313 0 183 320 0 103 chr12 110416704 110416801 -33369654 + L2 LINE L2 2615 2701 -613 373 283 131 7 chr12 110416943 110417088 -33369367 - L1MC4 LINE L1 -68 7974 7812 212 211 211 22 chr12 110417096 110417186 -33369269 + L2 LINE L2 3164 3270 -2 441 267 80 27 chr12 110417841 110417935 -33368520 + MER117 DNA MER1_type 17 123 -74 738 45 18 18 chr12 110417935 110418047 -33368408 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 441 267 80 27 chr12 110418047 110418102 -33368353 + MER117 DNA MER1_type 123 174 -23 851 261 59 8 chr12 110418338 110418576 -33367879 - MIR SINE MIR -10 252 3 1651 169 21 28 chr12 110418899 110419189 -33367266 - AluJo SINE Alu -19 293 6 1972 140 3 33 chr12 110419196 110419371 -33367084 - MLT1A1 LTR MaLR -40 325 163 2342 103 0 3 chr12 110419371 110419671 -33366784 - AluSp SINE Alu -14 299 1 1972 140 3 33 chr12 110419671 110419830 -33366625 - MLT1A1 LTR MaLR -202 163 1 982 203 132 0 chr12 110419929 110420126 -33366329 + MER58A DNA MER1_type 2 224 0 607 221 29 0 chr12 110420349 110420489 -33365966 + MER103 DNA DNA 2 145 -21 222 250 11 65 chr12 110420619 110420711 -33365744 + GA-rich Low_complexity Low_complexity 2 88 0 379 315 27 40 chr12 110420930 110421079 -33365376 - MIR SINE MIR -115 147 1 2387 80 3 0 chr12 110422877 110423178 -33363277 - AluSx SINE Alu -10 302 1 1094 158 0 18 chr12 110423180 110423351 -33363104 - FRAM SINE Alu -10 166 1 770 125 50 19 chr12 110423351 110423511 -33362944 - Charlie5 DNA MER1_type -27 2585 2421 1769 93 96 4 chr12 110423541 110423811 -33362644 - L1MA5A LINE L1 -16 6281 5987 809 158 9 136 chr12 110423813 110423949 -33362506 - Charlie5 DNA MER1_type -192 2432 2335 539 130 16 73 chr12 110423949 110424072 -33362383 + L1MA4 LINE L1 6181 6296 -4 809 158 9 136 chr12 110424072 110424163 -33362292 - Charlie5 DNA MER1_type -289 2335 2234 747 133 17 0 chr12 110424160 110424280 -33362175 - Charlie5 DNA MER1_type -2485 127 6 * 353 277 36 54 chr12 110424381 110424547 -33361908 - MIR SINE MIR -50 212 50 406 350 6 19 chr12 110424571 110424764 -33361691 + CT-rich Low_complexity Low_complexity 1 190 0 186 320 0 0 chr12 110424770 110424867 -33361588 + C-rich Low_complexity Low_complexity 5 101 0 272 324 7 37 chr12 110424913 110425049 -33361406 + C-rich Low_complexity Low_complexity 5 136 0 252 86 0 0 chr12 110425277 110425312 -33361143 + (CA)n Simple_repeat Simple_repeat 2 36 0 5596 126 22 48 chr12 110425314 110425904 -33360551 - L1MA9 LINE L1 -40 6272 5719 2220 106 0 17 chr12 110425904 110426206 -33360249 + AluSx SINE Alu 1 297 -15 5596 126 22 48 chr12 110426206 110426626 -33359829 - L1MA9 LINE L1 -593 5719 5289 22 70 0 0 chr12 110426950 110426993 -33359462 + AT_rich Low_complexity Low_complexity 1 43 0 3884 151 28 82 chr12 110428355 110429210 -33357245 - L1MA9 LINE L1 -812 5334 4526 273 297 148 4 chr12 110429237 110429372 -33357083 - MIR3 SINE MIR -5 203 52 259 184 13 105 chr12 110429370 110429446 -33357009 - MIR SINE MIR -28 234 166 * 778 236 177 49 chr12 110429466 110429787 -33356668 - L1MC4 LINE L1 0 8042 7764 2354 90 0 0 chr12 110429787 110430076 -33356379 - AluSc SINE Alu -20 289 1 778 236 177 49 chr12 110430076 110430452 -33356003 - L1MC4 LINE L1 -278 7764 7168 266 257 105 41 chr12 110430460 110430592 -33355863 - MIR SINE MIR -65 143 2 234 91 0 0 chr12 110430774 110430807 -33355648 + (CA)n Simple_repeat Simple_repeat 2 34 0 746 270 73 4 chr12 110431239 110431472 -33354983 + MIR SINE MIR 14 262 0 308 282 17 17 chr12 110431532 110431649 -33354806 - MLT1K LTR MaLR -2 586 470 2087 133 0 0 chr12 110432789 110433083 -33353372 - AluSx SINE Alu -12 300 7 1190 230 57 16 chr12 110433100 110433417 -33353038 + L1ME1 LINE L1 5254 5583 -583 1123 160 6 0 chr12 110433417 110433598 -33352857 - AluJb SINE Alu -2 310 129 811 186 0 21 chr12 110433632 110433777 -33352678 - FLAM_C SINE Alu 0 143 2 2559 200 47 11 chr12 110433779 110434334 -33352121 + L1ME1 LINE L1 5574 6148 -18 1251 82 13 0 chr12 110434575 110434733 -33351722 - L1PA10 LINE L1 -4 6164 6005 402 74 0 0 chr12 110435074 110435128 -33351327 + (TG)n Simple_repeat Simple_repeat 2 55 0 1002 124 11 6 chr12 110435763 110435940 -33350515 + (TTC)n Simple_repeat Simple_repeat 3 180 0 216 158 0 0 chr12 110436048 110436086 -33350369 + A-rich Low_complexity Low_complexity 1 38 0 1110 245 46 22 chr12 110436095 110436418 -33350037 - MER20B DNA MER1_type -344 439 109 214 321 18 0 chr12 110436736 110436792 -33349663 + L2 LINE L2 3248 3304 -9 215 265 0 0 chr12 110437373 110437422 -33349033 + MIR SINE MIR 195 243 -19 383 214 12 12 chr12 110437441 110437525 -33348930 - MER46C DNA MER2_type -5 333 250 260 219 146 37 chr12 110437537 110437619 -33348836 - MER46C DNA MER2_type -237 101 11 201 277 30 89 chr12 110437623 110437724 -33348731 - MIR SINE MIR -7 255 161 198 0 0 0 chr12 110437740 110437762 -33348693 + (T)n Simple_repeat Simple_repeat 1 22 0 2138 139 0 3 chr12 110438098 110438400 -33348055 + AluSx SINE Alu 1 301 -11 452 302 113 55 chr12 110438788 110439258 -33347197 + MARNA DNA Mariner 74 570 -16 544 262 132 77 chr12 110439258 110439448 -33347007 + L1MC4a LINE L1 5479 5612 -552 513 71 0 0 chr12 110439448 110439518 -33346937 + (TA)n Simple_repeat Simple_repeat 1 70 0 544 262 132 77 chr12 110439518 110439713 -33346742 + L1MC4a LINE L1 5612 5795 -369 528 119 20 10 chr12 110441777 110441878 -33344577 + CT-rich Low_complexity Low_complexity 3 104 0 1544 126 88 39 chr12 110441883 110442168 -33344287 - AluJo SINE Alu -11 301 3 1212 279 59 11 chr12 110442730 110443251 -33343204 + L2 LINE L2 2761 3311 -2 1901 169 0 7 chr12 110443463 110443765 -33342690 + AluSx SINE Alu 1 300 -12 2192 118 0 9 chr12 110444257 110444572 -33341883 + AluJb SINE Alu 1 312 0 342 197 79 63 chr12 110444634 110444761 -33341694 + MER69 DNA AcHobo 2398 2526 0 488 83 28 0 chr12 110444983 110445055 -33341400 - AluS SINE Alu -238 75 2 22 0 0 0 chr12 110445352 110445374 -33341081 + AT_rich Low_complexity Low_complexity 1 22 0 1996 149 0 10 chr12 110445376 110445684 -33340771 + AluJb SINE Alu 1 305 -7 436 296 76 23 chr12 110445731 110445903 -33340552 - MIR SINE MIR -62 200 20 232 278 29 73 chr12 110445956 110446025 -33340430 + MER113 DNA MER1_type? 28 99 -422 2255 108 0 0 chr12 110446025 110446312 -33340143 + AluSq SINE Alu 1 287 -26 232 278 29 73 chr12 110446312 110446487 -33339968 + MER113 DNA MER1_type? 99 261 -260 317 280 68 8 chr12 110446500 110446618 -33339837 + MER113 DNA MER1_type? 397 521 0 2093 140 16 0 chr12 110446724 110446762 -33339693 - AluSx SINE Alu 0 574 538 1319 67 6 0 chr12 110446762 110446941 -33339514 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2093 140 16 0 chr12 110446941 110447293 -33339162 - AluSx SINE Alu -36 538 1 1798 137 6 61 chr12 110447386 110447637 -33338818 + L1 LINE L1 3975 4238 -1908 180 0 0 0 chr12 110447637 110447657 -33338798 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1801 133 46 4 chr12 110447665 110447928 -33338527 - AluSx SINE Alu -38 274 1 1798 137 6 61 chr12 110447928 110448010 -33338445 + L1 LINE L1 4245 4298 -1848 1682 154 58 3 chr12 110448041 110448209 -33338246 - AluJb SINE Alu -3 309 117 390 21 0 0 chr12 110448209 110448256 -33338199 + (TG)n Simple_repeat Simple_repeat 2 48 0 1682 154 58 3 chr12 110448256 110448380 -33338075 - AluJb SINE Alu -195 117 1 712 253 24 0 chr12 110448808 110448978 -33337477 - MER5A DNA MER1_type 0 189 16 1626 181 35 0 chr12 110449281 110449563 -33336892 - AluJb SINE Alu -20 292 1 1438 167 22 29 chr12 110449607 110449882 -33336573 + AluJo SINE Alu 6 278 -34 269 243 114 0 chr12 110449939 110450009 -33336446 - L2 LINE L2 -41 3272 3195 30 45 0 0 chr12 110450017 110450061 -33336394 + AT_rich Low_complexity Low_complexity 1 44 0 1880 214 60 16 chr12 110450107 110450567 -33335888 + L1MB7 LINE L1 5669 6152 -32 1889 181 22 57 chr12 110450567 110450971 -33335484 - MLT1B LTR MaLR 0 390 1 1880 214 60 16 chr12 110450971 110450995 -33335460 + L1MB7 LINE L1 6152 6174 -10 207 0 0 0 chr12 110451433 110451456 -33334999 + (TA)n Simple_repeat Simple_repeat 2 24 0 2285 97 10 0 chr12 110451456 110451755 -33334700 - AluSp SINE Alu -11 302 1 24 53 0 0 chr12 110451918 110451956 -33334499 + AT_rich Low_complexity Low_complexity 1 38 0 230 250 0 25 chr12 110452822 110452931 -33333524 - L2 LINE L2 0 3272 3125 719 316 110 57 chr12 110452997 110453506 -33332949 - L2 LINE L2 -22 3250 2719 249 208 65 69 chr12 110453614 110453649 -33332806 - L1ME4a LINE L1 0 6121 6087 2592 99 17 8 chr12 110453649 110454001 -33332454 - THE1A LTR MaLR 0 355 1 12636 82 8 4 chr12 110454001 110455576 -33330879 - THE1A-int LTR MaLR 0 1580 1 2620 96 14 8 chr12 110455576 110455929 -33330526 - THE1A LTR MaLR 0 355 1 249 208 65 69 chr12 110455929 110456146 -33330309 - L1ME4a LINE L1 -31 6090 5810 321 141 13 26 chr12 110456334 110456412 -33330043 + GA-rich Low_complexity Low_complexity 1 77 0 567 229 63 74 chr12 110456845 110457165 -33329290 - LTR45 LTR ERV1 0 578 293 213 39 0 0 chr12 110457248 110457274 -33329181 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 14375 48 0 1 chr12 110457274 110459702 -33326753 - L1PA5 LINE L1 -16 6138 3706 1367 272 97 5 chr12 110459822 110460245 -33326210 - MLT1J LTR MaLR -49 462 1 438 237 0 0 chr12 110460557 110460675 -33325780 + CT-rich Low_complexity Low_complexity 2 119 0 1627 195 3 13 chr12 110460678 110460986 -33325469 - AluJo SINE Alu -7 305 1 437 226 129 40 chr12 110461138 110461386 -33325069 + L1MC4a LINE L1 5126 5395 -751 1401 177 67 18 chr12 110461389 110461671 -33324784 + AluJo SINE Alu 1 296 -16 1515 154 0 0 chr12 110461706 110461926 -33324529 + AluSx SINE Alu 63 282 -30 204 0 83 0 chr12 110461929 110461965 -33324490 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 635 295 83 55 chr12 110462018 110462603 -33323852 + L1MC4a LINE L1 5415 5786 -384 350 248 38 29 chr12 110463102 110463207 -33323248 - L1ME3A LINE L1 0 6170 6065 342 276 151 20 chr12 110463205 110463404 -33323051 - L1ME3A LINE L1 -650 5512 5288 * 1841 142 0 68 chr12 110464801 110464940 -33321515 + AluJo SINE Alu 1 148 -164 2282 103 0 0 chr12 110464940 110465231 -33321224 + AluSg SINE Alu 1 291 -19 1841 142 0 68 chr12 110465231 110465416 -33321039 + AluJo SINE Alu 148 303 -9 378 0 0 0 chr12 110465691 110465733 -33320722 + (TG)n Simple_repeat Simple_repeat 2 43 0 354 307 142 9 chr12 110467042 110467260 -33319195 + MIR SINE MIR 14 260 -2 680 283 43 5 chr12 110467566 110467750 -33318705 + MIR SINE MIR 18 208 -54 285 215 31 0 chr12 110467757 110467822 -33318633 + MIR SINE MIR 178 244 -18 1997 262 149 26 chr12 110467927 110469056 -33317399 - L2 LINE L2 -3 3310 2039 25 0 0 0 chr12 110469681 110469706 -33316749 + AT_rich Low_complexity Low_complexity 1 25 0 276 188 104 10 chr12 110469910 110470006 -33316449 + L1MC4 LINE L1 7938 8042 0 2240 114 3 0 chr12 110470299 110470598 -33315857 - AluSx SINE Alu -12 300 1 221 297 149 14 chr12 110470687 110470835 -33315620 + MIR SINE MIR 85 252 -10 23127 62 9 2 chr12 110470962 110473956 -33312499 + L1P LINE L1 2137 5152 -994 324 0 0 0 chr12 110474548 110474584 -33311871 + (CA)n Simple_repeat Simple_repeat 1 36 0 2338 91 0 7 chr12 110475287 110475595 -33310860 - AluY SINE Alu -5 306 1 13372 133 12 18 chr12 110475842 110477932 -33308523 - L1P LINE L1 -4058 2088 11 334 270 28 7 chr12 110478130 110478245 -33308210 + AluJ/FLAM SINE Alu 11 83 -219 2481 68 0 0 chr12 110478413 110478705 -33307750 - AluY SINE Alu -19 292 1 324 198 276 9 chr12 110478734 110478850 -33307605 - MIR SINE MIR 0 262 116 615 170 104 0 chr12 110479416 110479522 -33306933 + FLAM_A SINE Alu 1 117 -16 25 31 0 0 chr12 110479523 110479555 -33306900 + AT_rich Low_complexity Low_complexity 1 32 0 1488 235 107 27 chr12 110480416 110480893 -33305562 - LTR33 LTR ERVL 0 521 7 770 167 36 0 chr12 110482120 110482258 -33304197 + Tigger6 DNA MER2_type 5 147 -936 278 222 0 0 chr12 110482652 110482715 -33303740 + Tigger6 DNA MER2_type 1128 1190 -407 1741 175 53 0 chr12 110482729 110483014 -33303441 + AluJb SINE Alu 1 300 -12 1342 178 16 0 chr12 110483014 110483261 -33303194 + Tigger6 DNA MER2_type 1347 1597 0 4184 131 38 21 chr12 110483281 110483993 -33302462 - L1M3f LINE L1 -4595 733 10 639 250 95 6 chr12 110483994 110484162 -33302293 - MIR SINE MIR -64 198 16 460 158 13 0 chr12 110484324 110484400 -33302055 - Tigger7 DNA MER2_type -8 2479 2403 1312 196 9 9 chr12 110484404 110484634 -33301821 - Tigger7 DNA MER2_type -2229 258 29 1286 224 62 6 chr12 110484841 110485156 -33301299 - MLT1J LTR MaLR -125 325 22 523 353 96 20 chr12 110485301 110485800 -33300655 + L2 LINE L2 1647 2183 -1131 1733 206 106 28 chr12 110485944 110486120 -33300335 + MLT1C LTR MaLR 1 162 -305 1970 172 0 0 chr12 110486120 110486423 -33300032 + AluJb SINE Alu 1 303 -9 1733 206 106 28 chr12 110486423 110486679 -33299776 + MLT1C LTR MaLR 162 467 0 1872 117 8 4 chr12 110487015 110487279 -33299176 - AluSx SINE Alu -47 265 1 748 190 0 0 chr12 110487563 110487679 -33298776 - AluJb SINE Alu -194 118 3 21 0 0 0 chr12 110487688 110487709 -33298746 + AT_rich Low_complexity Low_complexity 1 21 0 1202 105 5 23 chr12 110487821 110488088 -33298367 + MER1B DNA MER1_type 104 339 0 453 211 15 83 chr12 110488104 110488237 -33298218 - L1MA9 LINE L1 -96 6216 6093 911 176 36 0 chr12 110488304 110488469 -33297986 + FRAM SINE Alu 1 167 -9 586 281 39 54 chr12 110488534 110488794 -33297661 + MIR SINE MIR 2 257 -5 332 281 88 35 chr12 110490585 110490756 -33295699 + MIR SINE MIR 12 191 -71 1389 117 17 69 chr12 110490763 110490994 -33295461 - MER20 DNA MER1_type 0 219 1 663 173 86 7 chr12 110491563 110491702 -33294753 - MER5A DNA MER1_type -11 178 29 2201 93 0 3 chr12 110491702 110491991 -33294464 - AluSx SINE Alu -18 294 7 23 0 0 0 chr12 110493764 110493787 -33292668 + AT_rich Low_complexity Low_complexity 1 23 0 1399 194 52 92 chr12 110493787 110493934 -33292521 - L1MA9 LINE L1 -39 6273 6122 1880 140 4 4 chr12 110493934 110494241 -33292214 + AluJb SINE Alu 3 309 0 1399 194 52 92 chr12 110494241 110494570 -33291885 - L1MA9 LINE L1 -190 6122 5814 3075 51 0 19 chr12 110494590 110494939 -33291516 - L1PA8 LINE L1 0 6172 5829 2398 57 0 20 chr12 110494939 110495236 -33291219 - AluY SINE Alu -20 291 1 3075 51 0 19 chr12 110495236 110495261 -33291194 - L1PA8 LINE L1 -343 5829 5805 288 253 108 76 chr12 110495376 110495534 -33290921 + MIR SINE MIR 73 235 -27 2520 64 0 6 chr12 110495703 110496014 -33290441 - AluY SINE Alu -2 309 1 351 289 47 27 chr12 110496310 110496459 -33289996 - MLT1H LTR MaLR -333 216 65 693 178 0 0 chr12 110496485 110496618 -33289837 - AluJb SINE Alu 0 311 179 1957 153 30 6 chr12 110496618 110496957 -33289498 - L1M4 LINE L1 -580 5604 5258 1593 209 10 0 chr12 110496999 110497300 -33289155 + AluJb SINE Alu 1 304 -8 1531 189 23 36 chr12 110497300 110497553 -33288902 - L1M4 LINE L1 -1519 4627 4379 2586 43 0 7 chr12 110497553 110497852 -33288603 - AluY SINE Alu -14 297 1 1531 189 23 36 chr12 110497852 110497984 -33288471 - L1M4 LINE L1 -1767 4379 4247 538 302 127 45 chr12 110497987 110498076 -33288379 - L1M4 LINE L1 -839 5307 5227 2269 102 0 0 chr12 110498076 110498371 -33288084 - AluSg SINE Alu -15 295 1 538 302 127 45 chr12 110498371 110498727 -33287728 - L1M4 LINE L1 -919 5227 4810 1152 227 18 0 chr12 110498727 110498947 -33287508 + MER58A DNA MER1_type 1 224 0 538 302 127 45 chr12 110498947 110499027 -33287428 - L1M4 LINE L1 -1336 4810 4738 1731 154 0 69 chr12 110499049 110499368 -33287087 - AluJb SINE Alu -15 297 1 875 261 168 93 chr12 110499468 110499982 -33286473 - L1M4 LINE L1 -2261 3885 3411 829 211 0 0 chr12 110499982 110500115 -33286340 + FLAM_A SINE Alu 1 133 0 875 261 168 93 chr12 110500115 110500366 -33286089 - L1M4 LINE L1 -2735 3411 3180 1772 193 0 3 chr12 110500366 110500667 -33285788 - AluJo SINE Alu -11 301 2 875 261 168 93 chr12 110500667 110501071 -33285384 - L1M4 LINE L1 -2966 3180 2610 764 179 26 0 chr12 110501071 110501188 -33285267 - FLAM_A SINE Alu -13 120 1 875 261 168 93 chr12 110501188 110501288 -33285167 - L1M4 LINE L1 -3536 2610 2519 329 310 0 0 chr12 110501859 110501946 -33284509 + (TG)n Simple_repeat Simple_repeat 2 88 0 2241 92 7 3 chr12 110502118 110502450 -33284005 - AluSx SINE Alu 0 333 1 191 61 30 0 chr12 110502885 110502918 -33283537 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2366 66 0 10 chr12 110502921 110503209 -33283246 - AluY SINE Alu -26 285 1 233 335 50 11 chr12 110503220 110503402 -33283053 - HAL1 LINE L1 -769 1738 1550 1467 264 154 6 chr12 110503587 110504061 -33282394 - MLT1H1 LTR MaLR 0 555 12 370 226 78 43 chr12 110504093 110504208 -33282247 + L2 LINE L2 3193 3311 -2 672 180 7 43 chr12 110504779 110504918 -33281537 - MER94 DNA DNA 0 134 1 1893 133 101 16 chr12 110505140 110505457 -33280998 + MER2 DNA MER2_type 1 344 0 939 287 12 8 chr12 110506101 110506359 -33280096 + MIR SINE MIR 2 260 -2 23 0 0 0 chr12 110506509 110506532 -33279923 + AT_rich Low_complexity Low_complexity 1 23 0 1038 189 0 0 chr12 110506665 110506834 -33279621 + AluJb SINE Alu 135 303 -9 335 222 0 0 chr12 110507971 110508034 -33278421 + MLT1F1 LTR MaLR 63 125 -442 232 103 128 0 chr12 110508034 110508073 -33278382 + L1MC4 LINE L1 7310 7353 -689 2570 156 63 38 chr12 110508091 110508642 -33277813 + L1MD3 LINE L1 7431 7995 0 1698 163 10 17 chr12 110508653 110508941 -33277514 + AluJo SINE Alu 1 286 -26 1170 306 127 21 chr12 110508999 110509964 -33276491 - L2 LINE L2 -9 3304 2240 263 210 325 35 chr12 110509965 110510165 -33276290 + L1ME4a LINE L1 5864 6121 0 401 261 57 65 chr12 110510664 110510894 -33275561 - HAL1 LINE L1 -36 2471 2244 358 127 0 63 chr12 110510894 110510905 -33275550 - AluJ/FLAM SINE Alu -242 60 50 1679 97 0 0 chr12 110510905 110511122 -33275333 - AluSg/x SINE Alu -10 300 84 358 127 0 63 chr12 110511122 110511173 -33275282 - AluJ/FLAM SINE Alu -252 50 2 201 108 0 0 chr12 110511529 110511566 -33274889 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2302 104 7 0 chr12 110511980 110512277 -33274178 + AluSx SINE Alu 1 299 -13 375 23 0 0 chr12 110512318 110512362 -33274093 + (TG)n Simple_repeat Simple_repeat 2 45 0 354 98 0 0 chr12 110512362 110512413 -33274042 + (TA)n Simple_repeat Simple_repeat 1 51 0 28 61 0 0 chr12 110512797 110512846 -33273609 + AT_rich Low_complexity Low_complexity 1 49 0 299 350 11 50 chr12 110513036 110513216 -33273239 + MER5B DNA MER1_type 2 174 -4 390 261 23 54 chr12 110513773 110513903 -33272552 - HAL1 LINE L1 -38 2469 2344 823 211 29 11 chr12 110513908 110514083 -33272372 + MER8 DNA MER2_type 1 178 -61 292 190 103 0 chr12 110514059 110514117 -33272338 + MER2 DNA MER2_type 282 345 0 * 326 165 0 106 chr12 110514110 110514138 -33272317 - Tigger2 DNA MER2_type -2641 77 48 2333 92 0 13 chr12 110514138 110514441 -33272014 + AluY SINE Alu 1 299 -12 326 165 0 106 chr12 110514441 110514497 -33271958 - Tigger2 DNA MER2_type -2670 48 2 2498 265 129 35 chr12 110514519 110516507 -33269948 - HAL1 LINE L1 -241 2266 10 490 312 49 39 chr12 110516595 110516800 -33269655 + MIR SINE MIR 24 230 -32 1762 167 27 0 chr12 110517093 110517387 -33269068 + AluJb SINE Alu 1 302 -10 2241 104 0 3 chr12 110517398 110517687 -33268768 + AluSq SINE Alu 1 288 -25 704 355 56 17 chr12 110518825 110519183 -33267272 - L2 LINE L2 -729 2585 2214 403 244 12 0 chr12 110519179 110519261 -33267194 + L2 LINE L2 3195 3277 -36 * 225 316 133 10 chr12 110519330 110519428 -33267027 + L2 LINE L2 3163 3272 0 828 203 0 0 chr12 110521754 110521892 -33264563 - FRAM SINE Alu -30 146 9 1635 114 36 85 chr12 110521909 110522215 -33264240 - AluSx SINE Alu -13 299 9 419 256 25 8 chr12 110622299 110622420 -33164035 + MLT1L LTR MaLR 491 613 -2 250 243 13 130 chr12 110622658 110622749 -33163706 + MIR SINE MIR 7 107 -105 2218 90 6 10 chr12 110622749 110623061 -33163394 - AluSp SINE Alu -2 311 1 2164 101 0 0 chr12 110623069 110623392 -33163063 - AluSx SINE Alu 0 312 2 250 243 13 130 chr12 110623392 110623441 -33163014 + MIR SINE MIR 114 147 -65 680 248 108 14 chr12 110623481 110623821 -33162634 + MLT1J2 LTR MaLR 1 435 -15 1028 215 61 103 chr12 110623952 110624181 -33162274 - MLT1A2 LTR MaLR -2 622 385 222 37 0 0 chr12 110624181 110624208 -33162247 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2805 77 11 8 chr12 110624208 110624585 -33161870 - L1PA8 LINE L1 -11 6161 5784 1028 215 61 103 chr12 110624585 110624777 -33161678 - MLT1A2 LTR MaLR -237 387 1 265 236 28 0 chr12 110624872 110624944 -33161511 - MER113 DNA MER1_type? -422 99 26 197 300 0 0 chr12 110624950 110625000 -33161455 + MIR SINE MIR 158 207 -55 1483 164 0 4 chr12 110625019 110625263 -33161192 + AluJb SINE Alu 40 282 -30 477 328 16 0 chr12 110625525 110625647 -33160808 + L2 LINE L2 3148 3271 -1 191 289 105 18 chr12 110625667 110625743 -33160712 - MIR3 SINE MIR -3 205 114 2252 92 3 0 chr12 110625743 110626046 -33160409 + AluSp SINE Alu 3 306 -7 191 289 105 18 chr12 110626046 110626083 -33160372 - MIR3 SINE MIR -94 114 82 665 250 141 0 chr12 110626089 110626273 -33160182 - MER20B DNA MER1_type -568 215 6 1556 167 59 10 chr12 110626401 110626689 -33159766 + AluJo SINE Alu 1 302 -10 2496 58 0 0 chr12 110627246 110627554 -33158901 - AluY SINE Alu -3 308 1 854 274 10 0 chr12 110628189 110628397 -33158058 + MER63A DNA MER1_type 1 210 0 1675 164 22 0 chr12 110628415 110628714 -33157741 - AluJo SINE Alu 0 307 3 903 296 33 38 chr12 110628719 110629111 -33157344 - L2 LINE L2 -13 3300 2911 323 276 0 0 chr12 110629439 110629515 -33156940 + L2 LINE L2 3230 3305 -8 305 204 0 0 chr12 110629528 110629582 -33156873 + MER20B DNA MER1_type 516 569 -214 616 200 45 7 chr12 110629730 110629885 -33156570 + MER20B DNA MER1_type 594 754 -29 231 326 41 0 chr12 110630665 110630763 -33155692 - MIR SINE MIR -69 139 38 1899 179 54 21 chr12 110630820 110630847 -33155608 - MLT2D LTR ERVL -15 399 374 396 0 0 0 chr12 110630847 110630891 -33155564 + (TG)n Simple_repeat Simple_repeat 2 45 0 1899 179 54 21 chr12 110630891 110631249 -33155206 - MLT2D LTR ERVL -40 374 1 250 318 0 0 chr12 110631452 110631540 -33154915 - L1ME LINE L1 -223 5898 5811 475 252 8 8 chr12 110631581 110631700 -33154755 + MLT1K LTR MaLR 16 134 -454 2027 119 7 0 chr12 110631748 110632041 -33154414 + AluSx SINE Alu 1 295 -17 1147 191 70 47 chr12 110632041 110632340 -33154115 + MLT1K LTR MaLR 275 580 -8 1926 164 0 0 chr12 110632487 110632799 -33153656 + AluJo SINE Alu 1 312 0 197 256 0 0 chr12 110632981 110633024 -33153431 + L2 LINE L2 2778 2820 -494 311 259 161 28 chr12 110633037 110633080 -33153375 - MER5A DNA MER1_type -18 171 135 1961 119 0 3 chr12 110633080 110633365 -33153090 + AluSx SINE Alu 3 286 -26 191 35 0 35 chr12 110633372 110633401 -33153054 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 311 259 161 28 chr12 110633401 110633492 -33152963 - MER5A DNA MER1_type -59 130 10 2662 107 3 5 chr12 110634312 110634686 -33151769 + THE1C LTR MaLR 3 375 0 563 266 48 25 chr12 110635393 110635577 -33150878 + LTR16A LTR ERVL 273 442 -8 895 222 39 50 chr12 110635758 110636146 -33150309 - Charlie4a DNA MER1_type -55 453 17 251 28 28 0 chr12 110636170 110636206 -33150249 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1825 174 28 19 chr12 110636303 110636665 -33149790 + MLT1A1 LTR MaLR 1 365 0 767 281 68 74 chr12 110637375 110637695 -33148760 - L2 LINE L2 0 3313 2996 2116 120 0 3 chr12 110637695 110637994 -33148461 + AluSx SINE Alu 1 298 -14 767 281 68 74 chr12 110637994 110638161 -33148294 - L2 LINE L2 -317 2996 2829 322 370 136 28 chr12 110638153 110638507 -33147948 - L2 LINE L2 -41 3231 2840 * 2174 255 93 23 chr12 110638548 110639470 -33146985 - L2 LINE L2 -52 3261 2272 501 255 68 27 chr12 110639481 110639722 -33146733 - L1M4 LINE L1 -864 5282 5028 2103 123 3 0 chr12 110639722 110640024 -33146431 - AluSx SINE Alu -9 303 1 501 255 68 27 chr12 110640024 110640045 -33146410 - L1M4 LINE L1 -1118 5028 5009 2050 125 0 10 chr12 110640047 110640351 -33146104 - AluSq SINE Alu -12 301 1 475 241 21 69 chr12 110640734 110640811 -33145644 + MER5A DNA MER1_type 2 71 -118 1982 102 3 7 chr12 110640811 110641120 -33145335 + AluY SINE Alu 1 308 0 475 241 21 69 chr12 110641120 110641186 -33145269 + MER5A DNA MER1_type 71 139 -50 1745 252 42 24 chr12 110641204 110641700 -33144755 - L1ME1 LINE L1 -4 6162 5658 215 234 47 16 chr12 110641700 110641764 -33144691 + MER5A DNA MER1_type 124 189 0 797 173 12 6 chr12 110642096 110642264 -33144191 - L1MB3 LINE L1 -3 6180 6012 302 310 120 0 chr12 110642366 110642508 -33143947 + MIR SINE MIR 48 206 -56 1931 111 25 0 chr12 110642515 110642795 -33143660 + AluSg SINE Alu 21 307 -3 1106 201 35 126 chr12 110642865 110643372 -33143083 + MER4C LTR ERV1 1 461 -4 831 219 49 6 chr12 110643408 110643591 -33142864 + MIR SINE MIR 72 262 0 2530 148 33 41 chr12 110644099 110644716 -33141739 - MER4B LTR ERV1 0 779 3 283 143 0 0 chr12 110645079 110645125 -33141330 - AluJb SINE Alu -180 122 85 1191 150 0 44 chr12 110645125 110645352 -33141103 - AluJo SINE Alu -95 217 1 409 297 74 66 chr12 110645914 110646170 -33140285 - L2 LINE L2 0 3272 3015 1956 193 83 9 chr12 110648121 110648556 -33137899 + MLT1C LTR MaLR 1 467 0 230 223 50 107 chr12 110649183 110649304 -33137151 + MLT1K LTR MaLR 385 498 -90 329 286 57 82 chr12 110649687 110649968 -33136487 - L1ME LINE L1 -464 5702 5442 1533 198 42 3 chr12 110649968 110650256 -33136199 - AluJo SINE Alu -3 299 1 329 286 57 82 chr12 110650256 110650552 -33135903 - L1ME LINE L1 -724 5442 5140 2239 220 78 88 chr12 110650580 110651206 -33135249 + MLT1E2 LTR MaLR 3 624 -2 236 173 0 107 chr12 110651290 110651365 -33135090 + MER106B DNA MER1_type 1 67 -992 200 154 19 0 chr12 110651385 110651437 -33135018 + (TA)n Simple_repeat Simple_repeat 2 54 0 1176 121 0 0 chr12 110651630 110651803 -33134652 - AluSx SINE Alu -137 175 3 3187 208 54 48 chr12 110651803 110652007 -33134448 + Charlie6 DNA MER1_type 573 774 -2726 1408 188 59 42 chr12 110652007 110652363 -33134092 + MLT1A1 LTR MaLR 3 364 -1 3187 208 54 48 chr12 110652363 110652989 -33133466 + Charlie6 DNA MER1_type 774 1408 -2092 277 125 196 0 chr12 110652978 110653034 -33133421 - Charlie6 DNA MER1_type -2066 1434 1368 * 861 227 74 37 chr12 110653082 110653333 -33133122 - L1ME1 LINE L1 -5 6161 5898 1804 118 5 170 chr12 110653333 110653750 -33132705 + MER7A DNA MER2_type 1 346 0 861 227 74 37 chr12 110653750 110653767 -33132688 - L1ME1 LINE L1 -268 5898 5883 726 257 111 41 chr12 110653784 110654126 -33132329 + MLT1H1 LTR MaLR 185 550 -5 272 293 27 0 chr12 110654464 110654539 -33131916 - MER5A DNA MER1_type -28 161 85 978 217 70 89 chr12 110655579 110655792 -33130663 - L1ME3A LINE L1 -5 6165 5950 2189 107 3 0 chr12 110655792 110656091 -33130364 + AluSx SINE Alu 1 300 -12 978 217 70 89 chr12 110656091 110656261 -33130194 - L1ME3A LINE L1 -220 5950 5790 1280 147 86 79 chr12 110656261 110656553 -33129902 - AluJb SINE Alu -16 296 3 978 217 70 89 chr12 110656553 110656623 -33129832 - L1ME3A LINE L1 -380 5790 5720 270 252 80 11 chr12 110656673 110656770 -33129685 + MIR SINE MIR 38 140 -68 306 256 151 0 chr12 110656799 110656885 -33129570 - L2 LINE L2 -4 3309 3211 301 315 140 25 chr12 110656993 110657228 -33129227 + L2 LINE L2 2995 3256 -16 659 227 29 55 chr12 110657513 110657746 -33128709 - MIR SINE MIR 0 262 34 427 243 131 0 chr12 110658089 110658196 -33128259 - L2 LINE L2 0 3313 3193 4075 137 25 42 chr12 110658207 110658353 -33128102 - MER50 LTR ERV1 -23 711 564 2416 73 0 6 chr12 110658353 110658667 -33127788 + AluSx SINE Alu 1 312 0 4075 137 25 42 chr12 110658667 110659243 -33127212 - MER50 LTR ERV1 -170 564 1 628 265 24 76 chr12 110659581 110659830 -33126625 + L2 LINE L2 2228 2463 -851 1158 246 58 79 chr12 110659882 110660350 -33126105 - MLT1J LTR MaLR -30 481 24 659 302 78 34 chr12 110660404 110660762 -33125693 + L2 LINE L2 2813 3186 -127 2376 153 71 7 chr12 110660763 110661213 -33125242 + MER50 LTR ERV1 1 479 -255 285 330 21 21 chr12 110661668 110661765 -33124690 - MIR3 SINE MIR -9 199 103 407 256 183 6 chr12 110661766 110661930 -33124525 - LTR67 LTR ERVL 0 557 365 1117 234 86 29 chr12 110661947 110662331 -33124124 + MLT1C LTR MaLR 9 414 -53 1239 115 0 0 chr12 110662391 110662574 -33123881 + AluSg/x SINE Alu 83 265 -45 1346 181 83 58 chr12 110662576 110662902 -33123553 - MLT1B LTR MaLR -29 361 28 256 280 53 0 chr12 110662915 110662990 -33123465 - MIR3 SINE MIR -119 89 11 559 246 58 58 chr12 110663198 110663405 -33123050 - LTR67 LTR ERVL 0 557 351 360 252 92 25 chr12 110663494 110663613 -33122842 - MIR SINE MIR -47 215 89 299 276 92 65 chr12 110663699 110663884 -33122571 - L1ME LINE L1 -541 5580 5391 2224 113 47 14 chr12 110663887 110664231 -33122224 - THE1A LTR MaLR 0 355 1 369 0 0 0 chr12 110664266 110664307 -33122148 + (TG)n Simple_repeat Simple_repeat 1 41 0 1439 133 12 16 chr12 110664402 110664651 -33121804 - L1PA16 LINE L1 -4 6162 5915 1931 109 61 0 chr12 110664693 110664987 -33121468 - AluSq SINE Alu -1 312 1 185 245 19 38 chr12 110665090 110665143 -33121312 - L2 LINE L2 -8 3305 3254 1618 154 10 14 chr12 110665648 110665941 -33120514 + AluJo SINE Alu 9 300 -12 401 339 54 23 chr12 110665965 110666186 -33120269 + MIR SINE MIR 18 245 -17 330 259 66 67 chr12 110666894 110667075 -33119380 - L1M1 LINE L1 -554 5567 5399 2747 214 112 26 chr12 110667561 110668337 -33118118 + L1ME2 LINE L1 5313 6155 -9 1976 81 48 4 chr12 110668402 110668675 -33117780 - AluSx SINE Alu -13 299 15 1891 134 27 0 chr12 110669698 110669997 -33116458 + AluSx SINE Alu 1 307 -5 421 287 18 15 chr12 110670021 110670322 -33116133 + CT-rich Low_complexity Low_complexity 1 301 0 2305 27 5 11 chr12 110670961 110671273 -33115182 + AluY SINE Alu 1 282 -29 224 247 11 90 chr12 110671647 110671736 -33114719 - L3 LINE CR1 -1 1576 1495 246 279 15 29 chr12 110671745 110671813 -33114642 - L2 LINE L2 -19 3294 3228 202 235 0 39 chr12 110672704 110672755 -33113700 - L2 LINE L2 -3 3310 3262 249 108 0 0 chr12 110674630 110674667 -33111788 + (T)n Simple_repeat Simple_repeat 1 37 0 2076 119 0 0 chr12 110677226 110677536 -33108919 + AluSx SINE Alu 1 310 -2 282 304 49 29 chr12 110677748 110677850 -33108605 + L2 LINE L2 3169 3272 0 2195 108 0 9 chr12 110678726 110679041 -33107414 + AluSp SINE Alu 1 312 -1 42829 45 2 0 chr12 110679166 110684347 -33102108 - L1P LINE L1 -955 5191 1 509 207 35 55 chr12 110684347 110684492 -33101963 + HsTC2 DNA Tc2 1754 1895 -3 449 167 130 37 chr12 110684564 110684672 -33101783 - MIR SINE MIR -119 143 26 188 86 29 0 chr12 110685243 110685278 -33101177 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 183 156 0 0 chr12 110685495 110685527 -33100928 + GA-rich Low_complexity Low_complexity 2 33 0 2543 114 5 14 chr12 110685602 110685969 -33100486 + THE1B LTR MaLR 1 364 0 855 201 108 39 chr12 110686933 110687212 -33099243 - L2 LINE L2 0 3313 3016 371 240 44 103 chr12 110687242 110687323 -33099132 - L2 LINE L2 -782 2532 2448 1494 232 89 69 chr12 110687323 110687423 -33099032 + MLT1E LTR MaLR 1 97 -496 2219 89 0 3 chr12 110687423 110687715 -33098740 - AluSg SINE Alu -19 291 1 1494 232 89 69 chr12 110687715 110688195 -33098260 + MLT1E LTR MaLR 97 593 0 371 240 44 103 chr12 110688195 110688288 -33098167 - L2 LINE L2 -866 2448 2351 1546 121 39 0 chr12 110688288 110688520 -33097935 - AluSx SINE Alu -14 298 58 1680 104 36 8 chr12 110688521 110688770 -33097685 - AluSq SINE Alu -53 260 5 371 240 44 103 chr12 110688770 110688796 -33097659 - L2 LINE L2 -962 2352 2341 1889 151 0 3 chr12 110688944 110689242 -33097213 + AluJb SINE Alu 1 297 -15 2134 166 0 50 chr12 110691042 110691445 -33095010 + MLT1B LTR MaLR 8 390 0 2058 110 3 35 chr12 110691817 110692134 -33094321 - AluSx SINE Alu -5 307 1 205 287 75 53 chr12 110694237 110694331 -33092124 - MIR SINE MIR -97 165 70 374 270 58 52 chr12 110695403 110695577 -33090878 + MIR SINE MIR 52 226 -36 1721 150 3 58 chr12 110695927 110696254 -33090201 - AluJo SINE Alu -1 311 3 526 247 162 0 chr12 110696781 110696935 -33089520 - MER5A DNA MER1_type 0 189 11 261 256 3 0 chr12 110697087 110697151 -33089304 + MIR SINE MIR 44 105 -103 479 246 18 96 chr12 110697254 110697474 -33088981 + MIR SINE MIR 45 247 -15 531 305 0 0 chr12 110697745 110697912 -33088543 - L1M4 LINE L1 -2605 3541 3375 217 205 152 61 chr12 110698735 110698842 -33087613 + MIR SINE MIR 3 116 -92 * 329 243 14 111 chr12 110698841 110698985 -33087470 + MIR SINE MIR 38 167 -95 844 203 0 6 chr12 110699002 110699165 -33087290 - FRAM SINE Alu -10 166 5 2082 114 0 0 chr12 110699219 110699520 -33086935 - AluSg SINE Alu 0 301 1 1581 173 3 40 chr12 110699536 110699837 -33086618 - AluJb SINE Alu -22 290 1 1953 212 123 5 chr12 110699891 110700340 -33086115 - MLT1D LTR MaLR -2 503 2 184 248 109 89 chr12 110700378 110700417 -33086038 + L2 LINE L2 3211 3248 -65 2356 155 5 5 chr12 110700417 110700791 -33085664 + MLT1A2 LTR MaLR 1 374 0 184 248 109 89 chr12 110700791 110700852 -33085603 + L2 LINE L2 3248 3313 0 464 209 114 82 chr12 110700889 110701194 -33085261 + MLT1I LTR MaLR 67 390 -19 649 188 24 73 chr12 110701373 110701503 -33084952 + MIR SINE MIR 105 240 -22 189 0 0 0 chr12 110701503 110701524 -33084931 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2001 92 42 3 chr12 110701526 110701809 -33084646 - AluSq SINE Alu -19 294 1 649 188 24 73 chr12 110701809 110701840 -33084615 + MIR SINE MIR 241 261 -1 909 162 0 0 chr12 110701840 110702013 -33084442 + (CCA)n Simple_repeat Simple_repeat 1 173 0 1404 170 65 4 chr12 110702175 110702451 -33084004 + AluJo SINE Alu 1 293 -19 1024 139 11 33 chr12 110702718 110702898 -33083557 + MER20 DNA MER1_type 24 199 -20 2108 115 70 17 chr12 110702907 110703263 -33083192 - THE1C LTR MaLR 0 375 1 600 304 62 29 chr12 110703313 110703556 -33082899 - MIR SINE MIR 0 262 12 242 327 28 0 chr12 110703666 110703773 -33082682 + L2 LINE L2 2148 2257 -1057 424 297 46 29 chr12 110703856 110704031 -33082424 + L2 LINE L2 3095 3272 0 941 199 178 25 chr12 110704323 110704604 -33081851 - MER33 DNA MER1_type 0 324 1 21 0 0 0 chr12 110704667 110704688 -33081767 + AT_rich Low_complexity Low_complexity 1 21 0 1585 141 24 62 chr12 110704691 110704982 -33081473 - AluJo SINE Alu -32 280 1 198 0 0 0 chr12 110705101 110705123 -33081332 + (CA)n Simple_repeat Simple_repeat 2 23 0 282 288 0 0 chr12 110705242 110705308 -33081147 - MIR SINE MIR -106 156 91 324 48 0 0 chr12 110705485 110705527 -33080928 + (TGG)n Simple_repeat Simple_repeat 1 42 0 315 130 0 0 chr12 110706614 110706668 -33079787 + (CCA)n Simple_repeat Simple_repeat 3 56 0 234 358 74 62 chr12 110707965 110708141 -33078314 - L2 LINE L2 -86 3186 3009 550 215 16 25 chr12 110708149 110708270 -33078185 - L2 LINE L2 -1 3312 3193 297 0 0 0 chr12 110708369 110708402 -33078053 + (TA)n Simple_repeat Simple_repeat 2 34 0 225 132 0 0 chr12 110708489 110708527 -33077928 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 54 0 0 chr12 110708709 110708746 -33077709 + AT_rich Low_complexity Low_complexity 1 37 0 330 145 72 0 chr12 110708765 110708931 -33077524 + (TA)n Simple_repeat Simple_repeat 1 178 0 29 28 0 0 chr12 110708931 110708967 -33077488 + AT_rich Low_complexity Low_complexity 1 36 0 219 200 50 10 chr12 110709015 110709115 -33077340 + (TA)n Simple_repeat Simple_repeat 1 104 0 802 282 117 12 chr12 110709115 110709533 -33076922 - L1ME4a LINE L1 -157 5964 5503 202 297 109 0 chr12 110709650 110709714 -33076741 + L2 LINE L2 3199 3269 -3 438 273 127 6 chr12 110709975 110710140 -33076315 - MIR SINE MIR -57 205 21 2083 136 58 9 chr12 110710229 110710575 -33075880 + MLT1A1 LTR MaLR 3 365 0 183 42 0 0 chr12 110710954 110710978 -33075477 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 67 0 0 chr12 110711039 110711084 -33075371 + AT_rich Low_complexity Low_complexity 1 45 0 504 239 76 32 chr12 110712002 110712149 -33074306 - MLT1K LTR MaLR -186 429 257 552 252 25 0 chr12 110712149 110712268 -33074187 + L2 LINE L2 3192 3313 0 21 36 0 0 chr12 110712407 110712435 -33074020 + AT_rich Low_complexity Low_complexity 1 28 0 556 227 128 17 chr12 110712692 110712864 -33073591 - MLT1J LTR MaLR -320 191 1 1701 213 74 42 chr12 110712974 110713067 -33073388 + MLT1C LTR MaLR 21 110 -357 2258 83 0 7 chr12 110713067 110713367 -33073088 + AluSg SINE Alu 3 300 -10 1701 213 74 42 chr12 110713367 110713706 -33072749 + MLT1C LTR MaLR 110 467 0 275 330 66 0 chr12 110713757 110713863 -33072592 + MIR SINE MIR 36 148 -60 400 293 108 27 chr12 110713903 110714125 -33072330 + L2 LINE L2 2738 2977 -337 336 102 0 0 chr12 110714536 110714585 -33071870 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1668 109 18 56 chr12 110714594 110714878 -33071577 - AluSq SINE Alu 0 313 41 275 292 303 11 chr12 110715396 110715581 -33070874 - MIR SINE MIR 0 262 24 2218 95 0 0 chr12 110715979 110716273 -33070182 - AluSx SINE Alu -18 294 1 355 250 102 0 chr12 110717055 110717163 -33069292 - MER103 DNA DNA -45 121 3 323 274 60 0 chr12 110717191 110717275 -33069180 - L2 LINE L2 -1 3271 3183 441 240 13 73 chr12 110717287 110717437 -33069018 + MIR SINE MIR 121 261 -1 224 291 43 86 chr12 110717437 110717647 -33068808 - L2 LINE L2 -115 3198 2998 229 277 24 24 chr12 110717951 110718034 -33068421 - MER5A DNA MER1_type -104 85 3 339 181 0 0 chr12 110718750 110718822 -33067633 + (TG)n Simple_repeat Simple_repeat 1 72 0 263 128 0 0 chr12 110719464 110719503 -33066952 - MIR3 SINE MIR 0 208 170 196 256 0 0 chr12 110719470 110719509 -33066946 - L3b LINE CR1 -2 1581 1543 * 330 270 109 52 chr12 110719948 110720016 -33066439 - MIR SINE MIR 0 262 199 1828 167 7 0 chr12 110720016 110720322 -33066133 - AluJo SINE Alu -3 309 2 330 270 109 52 chr12 110720322 110720427 -33066028 - MIR SINE MIR -63 199 79 1154 130 0 0 chr12 110720665 110720834 -33065621 - FRAM SINE Alu -8 168 1 1032 174 0 0 chr12 110721096 110721532 -33064923 + (TG)n Simple_repeat Simple_repeat 1 436 0 1631 109 87 143 chr12 110721568 110721781 -33064674 - MLT1B LTR MaLR 0 390 167 2188 111 0 6 chr12 110721781 110722096 -33064359 - AluSq SINE Alu 0 313 1 1631 109 87 143 chr12 110722096 110722232 -33064223 - MLT1B LTR MaLR -223 167 64 1980 90 52 0 chr12 110722232 110722522 -33063933 - AluSc SINE Alu 0 304 1 1631 109 87 143 chr12 110722522 110722583 -33063872 - MLT1B LTR MaLR -326 64 1 650 291 141 43 chr12 110724124 110724211 -33062244 + L2 LINE L2 2650 2727 -586 1411 176 15 52 chr12 110724211 110724535 -33061920 - AluJo SINE Alu 0 312 1 650 291 141 43 chr12 110724535 110724856 -33061599 + L2 LINE L2 2727 3015 -298 1922 109 0 0 chr12 110724856 110725122 -33061333 - AluY SINE Alu -13 298 33 650 291 141 43 chr12 110725122 110725332 -33061123 + L2 LINE L2 3015 3313 0 2193 92 0 3 chr12 110725512 110725806 -33060649 + AluSg SINE Alu 3 295 -15 1501 178 62 0 chr12 110726588 110726864 -33059591 - AluJo SINE Alu -19 293 1 211 212 61 45 chr12 110727119 110727185 -33059270 + L2 LINE L2 640 706 -2608 24 0 0 0 chr12 110727538 110727562 -33058893 + AT_rich Low_complexity Low_complexity 1 24 0 3917 187 5 19 chr12 110727566 110728311 -33058144 - L1MB2 LINE L1 -7 6164 5430 751 230 113 15 chr12 110728375 110728579 -33057876 - MIR SINE MIR -2 260 37 202 217 8 33 chr12 110729327 110729447 -33057008 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 510 17 0 0 chr12 110729644 110729703 -33056752 + (TA)n Simple_repeat Simple_repeat 1 59 0 2342 212 82 15 chr12 110730212 110730736 -33055719 - MER68 LTR ERV1 0 562 4 2028 112 0 42 chr12 110731350 110731662 -33054793 - AluSx SINE Alu -13 299 1 1362 210 42 52 chr12 110732099 110732721 -33053734 + MLT1D LTR MaLR 11 505 0 1132 284 130 9 chr12 110732780 110733241 -33053214 + MLT1K LTR MaLR 70 586 -2 235 316 92 10 chr12 110733516 110733614 -33052841 - MIR SINE MIR -85 123 18 7235 30 7 12 chr12 110733865 110734754 -33051701 + L1PA4 LINE L1 5270 6153 -2 1102 244 53 24 chr12 110734754 110735086 -33051369 - HsTC2 DNA Tc2 -131 1767 1247 304 256 111 0 chr12 110735077 110735167 -33051288 - HsTC2 DNA Tc2 -1760 138 39 * 183 222 44 0 chr12 110735658 110735703 -33050752 + MER5B DNA MER1_type 1 47 -131 250 312 106 7 chr12 110736360 110736501 -33049954 - L1MC/D LINE L1 -1986 5822 5668 257 259 148 19 chr12 110736542 110736650 -33049805 - MLT1L LTR MaLR -336 279 158 319 174 14 43 chr12 110736664 110736733 -33049722 + L2 LINE L2 3247 3313 0 422 121 0 0 chr12 110737937 110738003 -33048452 - L1PA8 LINE L1 -9 6163 6098 258 287 21 53 chr12 110738014 110738108 -33048347 - MIR SINE MIR -52 210 120 223 239 75 0 chr12 110738134 110738201 -33048254 - L2 LINE L2 -2 3311 3240 410 309 86 30 chr12 110738405 110738638 -33047817 + MIR SINE MIR 17 262 0 214 203 125 0 chr12 110738660 110738724 -33047731 + L2 LINE L2 2997 3068 -245 674 131 0 9 chr12 110739806 110739913 -33046542 + FLAM_A SINE Alu 10 115 -27 272 254 22 97 chr12 110739916 110740050 -33046405 - MER5B DNA MER1_type -43 135 12 751 200 45 55 chr12 110740287 110740507 -33045948 + MER20 DNA MER1_type 1 218 -1 559 188 0 0 chr12 110740549 110740644 -33045811 - MER5A DNA MER1_type -83 106 12 592 256 117 39 chr12 110740644 110740874 -33045581 + MIR SINE MIR 4 251 -11 613 253 39 0 chr12 110741399 110741553 -33044902 + MIR SINE MIR 52 211 -51 198 274 211 0 chr12 110741597 110741692 -33044763 - MER5A DNA MER1_type -5 184 70 431 289 60 20 chr12 110742507 110742656 -33043799 + MIR SINE MIR 9 163 -99 582 261 43 79 chr12 110742746 110743075 -33043380 - MLT1H LTR MaLR -182 367 51 191 274 35 62 chr12 110743227 110743340 -33043115 + L2 LINE L2 2887 2996 -276 692 251 38 55 chr12 110743342 110743577 -33042878 + MIR SINE MIR 31 261 -1 383 163 12 0 chr12 110744004 110744084 -33042371 + (CCA)n Simple_repeat Simple_repeat 2 82 0 1984 126 86 21 chr12 110744185 110744510 -33041945 + THE1B LTR MaLR 19 364 0 219 313 16 16 chr12 110744621 110744685 -33041770 + L2 LINE L2 3241 3304 -9 791 257 148 55 chr12 110744911 110745277 -33041178 - MLT1J2 LTR MaLR 0 450 51 288 324 28 19 chr12 110746789 110746897 -33039558 + MIR SINE MIR 84 192 -70 1352 139 0 28 chr12 110746942 110747158 -33039297 + MER2 DNA MER2_type 1 210 -135 271 203 0 62 chr12 110747467 110747531 -33038924 - L2 LINE L2 -4 3268 3209 516 238 40 0 chr12 110747597 110747723 -33038732 - MER94 DNA DNA 0 134 4 231 186 0 0 chr12 110748233 110748276 -33038179 + G-rich Low_complexity Low_complexity 1 43 0 434 114 14 0 chr12 110749005 110749075 -33037380 - MSTB1 LTR MaLR 0 432 362 1815 159 118 9 chr12 110749651 110749991 -33036464 - MSTB1 LTR MaLR -55 377 1 316 171 11 80 chr12 110749999 110750087 -33036368 + MIR SINE MIR 111 192 -70 1648 197 13 13 chr12 110750159 110750474 -33035981 + MER58B DNA MER1_type 27 341 0 234 0 0 0 chr12 110750615 110750641 -33035814 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 593 254 165 49 chr12 110750643 110751013 -33035442 - L2 LINE L2 -9 3304 2892 907 163 116 6 chr12 110751192 110751364 -33035091 - MER20 DNA MER1_type -8 211 21 370 274 132 20 chr12 110752080 110752277 -33034178 - MIR SINE MIR -3 259 41 261 240 31 31 chr12 110752645 110752741 -33033714 - MER5A DNA MER1_type -80 109 14 1868 121 21 3 chr12 110753129 110753419 -33033036 + AluJo SINE Alu 11 305 -7 249 108 0 0 chr12 110754061 110754098 -33032357 + (T)n Simple_repeat Simple_repeat 1 37 0 414 0 0 0 chr12 110754180 110754226 -33032229 + (TG)n Simple_repeat Simple_repeat 2 47 0 180 341 37 12 chr12 110755281 110755363 -33031092 + MIR SINE MIR 61 144 -118 210 37 0 0 chr12 110755619 110755646 -33030809 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 451 283 112 7 chr12 110756546 110756698 -33029757 - MIR3 SINE MIR -11 197 30 275 298 106 69 chr12 110757315 110757533 -33028922 + MIR SINE MIR 18 243 -19 320 208 14 132 chr12 110757600 110757744 -33028711 + MER5B DNA MER1_type 5 131 -47 698 168 0 0 chr12 110757793 110757900 -33028555 - FLAM_C SINE Alu -34 109 3 299 266 25 48 chr12 110758630 110758731 -33027724 + MIR SINE MIR 38 146 -62 219 114 0 0 chr12 110759141 110759176 -33027279 + (T)n Simple_repeat Simple_repeat 1 35 0 821 176 6 0 chr12 110759634 110759810 -33026645 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 380 280 47 0 chr12 110759815 110759922 -33026533 - L2 LINE L2 -9 3304 3193 680 171 38 142 chr12 110760214 110760425 -33026030 - AluJo SINE Alu -3 309 121 911 268 37 16 chr12 110760577 110760820 -33025635 + MIR SINE MIR 15 262 0 227 30 0 30 chr12 110761336 110761369 -33025086 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 846 128 88 34 chr12 110762173 110762321 -33024134 + MLT1B LTR MaLR 1 156 -234 727 89 73 40 chr12 110762326 110762450 -33024005 + MLT1B LTR MaLR 263 390 0 2010 111 72 33 chr12 110762837 110763198 -33023257 - THE1C LTR MaLR 0 375 1 182 287 230 0 chr12 110763292 110763379 -33023076 - MIR SINE MIR -5 257 151 308 245 326 0 chr12 110764425 110764572 -33021883 + MIR SINE MIR 31 225 -37 1590 247 61 28 chr12 110764581 110764994 -33021461 - MLT1J LTR MaLR -19 492 60 1950 126 0 3 chr12 110764994 110765280 -33021175 + AluSx SINE Alu 1 285 -27 1590 247 61 28 chr12 110765280 110765339 -33021116 - MLT1J LTR MaLR -451 60 4 216 200 0 0 chr12 110765369 110765419 -33021036 + (CAT)n Simple_repeat Simple_repeat 2 51 0 1511 162 96 4 chr12 110766330 110766602 -33019853 + AluJo SINE Alu 5 301 -1 448 340 19 6 chr12 110767028 110767184 -33019271 - MIR SINE MIR -99 163 6 191 267 60 129 chr12 110767181 110767413 -33019042 + L2 LINE L2 2807 3022 -250 * 462 170 113 9 chr12 110767446 110767552 -33018903 + LTR55 LTR ERV 2 118 -430 662 250 34 0 chr12 110767567 110767715 -33018740 - MER21B LTR ERV1 -396 467 315 * 1012 187 192 56 chr12 110767688 110768047 -33018408 + LTR55 LTR ERV 82 489 -59 899 116 0 0 chr12 110768052 110768181 -33018274 - FLAM_A SINE Alu -4 138 10 210 91 0 0 chr12 110768702 110768735 -33017720 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 350 167 39 51 chr12 110771499 110771577 -33014878 + MER5A DNA MER1_type 9 85 -104 335 252 219 0 chr12 110771752 110771875 -33014580 + MIR SINE MIR 113 262 0 365 327 32 3 chr12 110772508 110772617 -33013838 + MIR SINE MIR 3 112 -96 539 198 15 26 chr12 110772693 110772809 -33013646 - L1MC2 LINE L1 0 7770 7654 1775 168 3 7 chr12 110772809 110773101 -33013354 - AluJo SINE Alu -11 301 11 539 198 15 26 chr12 110773101 110773649 -33012806 - L1MC2 LINE L1 -116 7654 6136 768 236 19 61 chr12 110773982 110774194 -33012261 - MIR SINE MIR 0 262 60 576 205 114 30 chr12 110774303 110774469 -33011986 + MIR SINE MIR 21 200 -62 868 186 95 135 chr12 110774853 110774957 -33011498 + MER2 DNA MER2_type 1 108 -237 982 129 0 0 chr12 110774957 110775089 -33011366 - FLAM_C SINE Alu -1 132 1 868 186 95 135 chr12 110775089 110775333 -33011122 + MER2 DNA MER2_type 108 335 -10 22 0 0 0 chr12 110775414 110775436 -33011019 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr12 110776223 110776247 -33010208 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chr12 110776246 110776276 -33010179 + (CA)n Simple_repeat Simple_repeat 1 30 0 1113 122 0 6 chr12 110776893 110777049 -33009406 + AluSg/x SINE Alu 131 285 -25 2196 134 3 14 chr12 110777287 110777653 -33008802 + L1MB3 LINE L1 5561 5922 -261 2728 143 17 2 chr12 110778076 110778496 -33007959 - MSTB LTR MaLR 0 426 1 1775 160 26 16 chr12 110778962 110779299 -33007156 + AluJo SINE Alu 1 340 0 2165 106 34 0 chr12 110779550 110779842 -33006613 + AluSx SINE Alu 1 302 -10 637 276 42 9 chr12 110780716 110780930 -33005525 - MLT1A1 LTR MaLR 0 365 145 645 233 0 8 chr12 110780945 110781065 -33005390 - AluSg/x SINE Alu -17 293 175 709 163 41 0 chr12 110781074 110781197 -33005258 - MLT1A1 LTR MaLR -206 159 32 1993 147 27 0 chr12 110781303 110781595 -33004860 + AluJo SINE Alu 1 300 -12 571 276 61 6 chr12 110782778 110782941 -33003514 + MIR SINE MIR 23 194 -68 256 281 0 0 chr12 110783161 110783218 -33003237 + MLT1L LTR MaLR 559 615 0 231 267 48 95 chr12 110783227 110783332 -33003123 + L2 LINE L2 3150 3249 -23 238 347 0 0 chr12 110783359 110783392 -33003063 + GA-rich Low_complexity Low_complexity 2 34 -42 1036 224 35 0 chr12 110783392 110783593 -33002862 + MER63A DNA MER1_type 2 209 -1 238 347 0 0 chr12 110783593 110783634 -33002821 + GA-rich Low_complexity Low_complexity 33 76 0 22 0 0 0 chr12 110783634 110783656 -33002799 + AT_rich Low_complexity Low_complexity 1 22 0 1680 142 4 8 chr12 110784776 110785030 -33001425 + AluJo SINE Alu 39 291 -21 1058 215 28 0 chr12 110785523 110785737 -33000718 - MER58A DNA MER1_type 0 224 5 534 234 186 7 chr12 110787145 110787290 -32999165 - MER5A DNA MER1_type -6 183 13 331 237 151 124 chr12 110787349 110787409 -32999046 + L2 LINE L2 2923 2980 -333 2220 129 3 0 chr12 110787409 110787718 -32998737 - AluJb SINE Alu 0 312 3 331 237 151 124 chr12 110787718 110788028 -32998427 + L2 LINE L2 2980 3303 -10 588 221 54 7 chr12 110788177 110788326 -32998129 + MIR SINE MIR 106 261 -1 226 226 19 0 chr12 110788329 110788382 -32998073 + (ATGGTG)n Simple_repeat Simple_repeat 2 55 0 196 295 16 16 chr12 110788404 110788465 -32997990 - L2 LINE L2 -219 3053 2993 1262 226 125 24 chr12 110788477 110788500 -32997955 - MLT1E LTR MaLR 0 576 557 1780 152 177 19 chr12 110788500 110788683 -32997772 - MSTA LTR MaLR -2 426 273 309 26 0 0 chr12 110788683 110788721 -32997734 + (GA)n Simple_repeat Simple_repeat 1 38 0 1780 152 177 19 chr12 110788721 110788905 -32997550 - MSTA LTR MaLR -155 273 1 1262 226 125 24 chr12 110788905 110789387 -32997068 - MLT1E LTR MaLR -19 557 1 269 230 52 26 chr12 110789416 110789524 -32996931 - L2 LINE L2 -300 2972 2861 290 342 66 13 chr12 110789524 110789676 -32996779 + MIR3 SINE MIR 1 160 -48 244 229 0 0 chr12 110790115 110790163 -32996292 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 248 262 78 78 chr12 110790652 110790793 -32995662 + MIR3 SINE MIR 34 174 -34 261 265 15 0 chr12 110791336 110791404 -32995051 - MIR SINE MIR -117 145 77 1942 150 35 123 chr12 110791491 110791813 -32994642 - MLT1C LTR MaLR 0 467 205 2480 93 0 0 chr12 110791813 110792114 -32994341 + AluSx SINE Alu 1 301 -11 1942 150 35 123 chr12 110792114 110792303 -32994152 - MLT1C LTR MaLR -262 205 1 191 217 43 0 chr12 110792451 110792497 -32993958 - L2 LINE L2 -491 2823 2776 1919 131 3 7 chr12 110793667 110793950 -32992505 - AluSx SINE Alu -30 282 1 482 222 34 51 chr12 110794300 110794417 -32992038 + L2 LINE L2 3180 3294 -19 600 230 33 53 chr12 110794419 110794571 -32991884 - L2 LINE L2 0 3313 3165 2431 95 0 9 chr12 110794572 110794887 -32991568 + AluSq SINE Alu 1 312 -1 37 23 0 0 chr12 110794957 110795001 -32991454 + AT_rich Low_complexity Low_complexity 1 44 0 355 58 0 0 chr12 110795418 110795470 -32990985 + L1MA1 LINE L1 6249 6300 -2 986 231 193 58 chr12 110796199 110796682 -32989773 - L2 LINE L2 -32 3281 2727 2187 125 10 0 chr12 110796758 110797055 -32989400 - AluSx SINE Alu -12 300 1 893 144 17 61 chr12 110797178 110797358 -32989097 - FRAM SINE Alu -3 173 2 2217 98 29 13 chr12 110798543 110798849 -32987606 - AluSx SINE Alu 0 312 2 227 152 0 22 chr12 110798849 110798895 -32987560 - LTR33A LTR ERVL -33 490 446 278 304 39 0 chr12 110799208 110799310 -32987145 - LTR67 LTR ERVL -338 219 114 751 256 92 43 chr12 110799515 110799863 -32986592 - Charlie7 DNA MER1_type -1986 626 262 580 262 77 45 chr12 110800643 110800864 -32985591 - L2 LINE L2 -6 3307 3080 264 185 12 37 chr12 110800915 110800996 -32985459 + (CCCG)n Simple_repeat Simple_repeat 2 80 0 623 280 42 9 chr12 110801296 110801510 -32984945 - MLT1A1 LTR MaLR 0 365 145 640 248 0 8 chr12 110801519 110801648 -32984807 - AluSg/x SINE Alu -8 304 177 697 171 41 0 chr12 110801657 110801780 -32984675 - MLT1A1 LTR MaLR -206 159 32 1916 150 35 0 chr12 110801886 110802173 -32984282 + AluJo SINE Alu 1 297 -15 589 270 61 6 chr12 110803354 110803517 -32982938 + MIR SINE MIR 23 194 -68 256 281 0 0 chr12 110803737 110803794 -32982661 + MLT1L LTR MaLR 559 615 0 231 267 48 95 chr12 110803803 110803908 -32982547 + L2 LINE L2 3150 3249 -23 238 347 0 0 chr12 110803935 110803968 -32982487 + GA-rich Low_complexity Low_complexity 2 34 -42 1036 224 35 0 chr12 110803968 110804169 -32982286 + MER63A DNA MER1_type 2 209 -1 238 347 0 0 chr12 110804169 110804210 -32982245 + GA-rich Low_complexity Low_complexity 33 76 0 22 0 0 0 chr12 110804210 110804232 -32982223 + AT_rich Low_complexity Low_complexity 1 22 0 1680 142 4 8 chr12 110805353 110805607 -32980848 + AluJo SINE Alu 39 291 -21 1058 215 28 0 chr12 110806100 110806314 -32980141 - MER58A DNA MER1_type 0 224 5 534 234 186 7 chr12 110807722 110807867 -32978588 - MER5A DNA MER1_type -6 183 13 342 237 151 124 chr12 110807926 110807986 -32978469 + L2 LINE L2 2923 2980 -333 2220 129 3 0 chr12 110807986 110808295 -32978160 - AluJb SINE Alu 0 312 3 342 237 151 124 chr12 110808295 110808605 -32977850 + L2 LINE L2 2980 3303 -10 588 221 54 7 chr12 110808754 110808903 -32977552 + MIR SINE MIR 106 261 -1 226 226 19 0 chr12 110808906 110808959 -32977496 + (ATGGTG)n Simple_repeat Simple_repeat 2 55 0 196 295 16 16 chr12 110808981 110809042 -32977413 - L2 LINE L2 -219 3053 2993 1262 226 124 24 chr12 110809054 110809077 -32977378 - MLT1E LTR MaLR 0 576 557 1780 152 177 19 chr12 110809077 110809260 -32977195 - MSTA LTR MaLR -2 426 273 255 31 0 0 chr12 110809260 110809292 -32977163 + (GA)n Simple_repeat Simple_repeat 1 32 0 1780 152 177 19 chr12 110809292 110809476 -32976979 - MSTA LTR MaLR -155 273 1 1262 226 124 24 chr12 110809476 110809958 -32976497 - MLT1E LTR MaLR -19 557 1 269 135 0 0 chr12 110809987 110810039 -32976416 - L2 LINE L2 -300 2972 2921 290 342 66 13 chr12 110810095 110810247 -32976208 + MIR3 SINE MIR 1 160 -48 244 229 0 0 chr12 110810686 110810734 -32975721 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 248 262 78 78 chr12 110811223 110811364 -32975091 + MIR3 SINE MIR 34 174 -34 261 265 15 0 chr12 110811907 110811975 -32974480 - MIR SINE MIR -117 145 77 1929 152 35 123 chr12 110812062 110812384 -32974071 - MLT1C LTR MaLR 0 467 205 2480 93 0 0 chr12 110812384 110812685 -32973770 + AluSx SINE Alu 1 301 -11 1929 152 35 123 chr12 110812685 110812874 -32973581 - MLT1C LTR MaLR -262 205 1 267 343 37 0 chr12 110813023 110813131 -32973324 - L2 LINE L2 -491 2823 2712 1942 127 3 7 chr12 110814241 110814524 -32971931 - AluSx SINE Alu -30 282 1 482 222 34 51 chr12 110814874 110814991 -32971464 + L2 LINE L2 3180 3294 -19 1123 287 58 51 chr12 110814993 110815146 -32971309 - L2 LINE L2 0 3313 3162 2334 98 0 0 chr12 110815146 110815464 -32970991 + AluSq SINE Alu 1 318 0 1123 287 58 51 chr12 110815464 110815552 -32970903 - L2 LINE L2 -151 3162 3076 554 74 0 25 chr12 110815552 110815633 -32970822 - MADE1 DNA Mariner -1 79 1 1123 287 58 51 chr12 110815633 110815856 -32970599 - L2 LINE L2 -237 3076 2844 304 336 44 9 chr12 110816272 110816385 -32970070 + MIR SINE MIR 16 132 -76 188 283 195 35 chr12 110816465 110816578 -32969877 + L2 LINE L2 3142 3272 0 334 322 48 7 chr12 110816664 110816810 -32969645 + MIR SINE MIR 40 191 -71 413 269 83 6 chr12 110817073 110817229 -32969226 - MLT1J LTR MaLR -343 168 1 371 294 0 10 chr12 110817360 110817462 -32968993 - MIR SINE MIR -15 247 147 1165 66 0 0 chr12 110817468 110817605 -32968850 - AluSc SINE Alu -14 295 159 190 263 35 18 chr12 110817624 110817681 -32968774 - MIR SINE MIR -187 75 18 199 248 157 58 chr12 110818325 110818446 -32968009 - MIR3 SINE MIR -15 193 61 483 240 13 67 chr12 110818608 110818696 -32967759 + MIR SINE MIR 103 181 -81 2058 105 14 10 chr12 110818696 110819012 -32967443 - AluSx SINE Alu 0 312 1 483 240 13 67 chr12 110819012 110819073 -32967382 + MIR SINE MIR 181 244 -18 182 217 94 75 chr12 110819131 110819237 -32967218 + L2 LINE L2 2435 2542 -772 532 263 48 48 chr12 110820048 110820234 -32966221 + MIR SINE MIR 76 261 -1 2642 113 3 3 chr12 110820386 110820750 -32965705 - THE1B LTR MaLR 0 364 1 2454 104 0 0 chr12 110820933 110821241 -32965214 - AluSx SINE Alu -4 308 1 210 250 98 54 chr12 110821795 110821907 -32964548 + MIR SINE MIR 69 185 -77 313 244 12 35 chr12 110822449 110822535 -32963920 - MER117 DNA MER1_type -36 161 78 1694 159 126 6 chr12 110823384 110823710 -32962745 + MLT1A1 LTR MaLR 1 365 0 899 201 109 0 chr12 110824330 110824514 -32961941 - MIR SINE MIR -57 205 2 886 189 73 16 chr12 110824650 110824841 -32961614 - MIR SINE MIR -32 230 29 234 258 152 0 chr12 110826222 110826288 -32960167 - L2 LINE L2 -37 3276 3201 465 306 45 30 chr12 110826318 110826366 -32960089 - MIR SINE MIR 0 262 216 2100 112 0 0 chr12 110826366 110826662 -32959793 - AluSx SINE Alu -15 297 2 465 306 45 30 chr12 110826662 110826812 -32959643 - MIR SINE MIR -46 216 61 2072 108 7 0 chr12 110826837 110827133 -32959322 - AluSp SINE Alu -14 299 2 8586 44 2 1 chr12 110827428 110828498 -32957957 - L1PA4 LINE L1 -2036 4110 3040 10877 31 7 0 chr12 110828504 110830540 -32955915 + L1PA4 LINE L1 4108 6154 -1 1882 145 3 7 chr12 110830582 110830878 -32955577 + AluSx SINE Alu 1 295 -17 262 231 0 0 chr12 110830963 110831015 -32955440 - L2 LINE L2 -4 3268 3217 501 280 45 13 chr12 110831833 110831990 -32954465 - MIR SINE MIR -51 211 50 334 280 53 30 chr12 110832400 110832532 -32953923 + MER5A DNA MER1_type 43 177 -12 252 0 0 0 chr12 110832907 110832935 -32953520 + (T)n Simple_repeat Simple_repeat 1 28 0 651 36 12 0 chr12 110832949 110833032 -32953423 - L1MB3 LINE L1 -12 6171 6088 333 296 64 40 chr12 110833761 110833886 -32952569 - MIR3 SINE MIR -7 201 74 270 326 52 22 chr12 110834944 110835079 -32951376 + MIR SINE MIR 9 147 -115 317 197 16 0 chr12 110835095 110835156 -32951299 + MIR SINE MIR 86 147 -61 810 145 46 0 chr12 110836431 110836562 -32949893 - FLAM_C SINE Alu -5 138 2 632 297 55 14 chr12 110837803 110838022 -32948433 - MIR SINE MIR -32 230 3 390 206 186 0 chr12 110838327 110838429 -32948026 + MIR SINE MIR 63 183 -79 2161 91 0 3 chr12 110839393 110839680 -32946775 - AluSx SINE Alu -22 290 5 1911 146 10 0 chr12 110839920 110840228 -32946227 - AluSx SINE Alu -1 311 1 386 276 26 46 chr12 110840451 110840603 -32945852 - L1ME LINE L1 -378 5743 5595 769 210 25 0 chr12 110841154 110841316 -32945139 - MIR SINE MIR -15 247 82 1594 199 121 24 chr12 110841331 110841752 -32944703 - MLT1C LTR MaLR 0 467 6 1561 169 3 7 chr12 110843058 110843370 -32943085 - AluJb SINE Alu 0 311 1 351 0 0 0 chr12 110843429 110843468 -32942987 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 363 94 0 0 chr12 110843511 110843564 -32942891 - Alu SINE Alu -1 301 249 1070 232 41 0 chr12 110843748 110843994 -32942461 - L1MB7 LINE L1 -1 6183 5928 2305 170 89 38 chr12 110844507 110844790 -32941665 + L1MB3 LINE L1 5664 5984 -199 1721 176 3 7 chr12 110844790 110845092 -32941363 + AluJb SINE Alu 1 301 -11 2305 170 89 38 chr12 110845092 110845303 -32941152 + L1MB3 LINE L1 5984 6183 0 2004 74 4 0 chr12 110845428 110845714 -32940741 + AluSx SINE Alu 29 315 0 189 301 120 45 chr12 110845925 110846058 -32940397 + MER5A DNA MER1_type 43 185 -4 1096 268 185 19 chr12 110846121 110846312 -32940143 - L2 LINE L2 0 3313 3155 1913 131 7 7 chr12 110846312 110846609 -32939846 + AluSx SINE Alu 1 297 -15 1096 268 185 19 chr12 110846609 110847249 -32939206 - L2 LINE L2 -158 3155 2355 412 313 27 27 chr12 110847588 110847735 -32938720 + MIR3 SINE MIR 19 165 -43 507 178 0 0 chr12 110847757 110847858 -32938597 + C-rich Low_complexity Low_complexity 2 102 0 2212 169 6 8 chr12 110847924 110848290 -32938165 - MLT1A1 LTR MaLR 0 365 1 187 146 125 21 chr12 110848368 110848416 -32938039 + MIR3 SINE MIR 125 177 -31 547 233 53 0 chr12 110849334 110849467 -32936988 + MIR SINE MIR 49 188 -74 235 283 67 0 chr12 110849752 110849812 -32936643 - L2 LINE L2 -1 3271 3208 219 331 51 23 chr12 110849807 110849982 -32936473 + MIR3 SINE MIR 8 187 -21 * 1631 162 40 7 chr12 110850346 110850648 -32935807 + AluJb SINE Alu 1 312 0 483 267 73 13 chr12 110851194 110851344 -32935111 - MIR3 SINE MIR -16 192 34 370 305 147 16 chr12 110851349 110851539 -32934916 - MIR SINE MIR -11 251 37 556 234 9 0 chr12 110851567 110851678 -32934777 - MER81 DNA DNA -2 112 1 673 262 26 78 chr12 110852191 110852462 -32933993 + MIR SINE MIR 6 262 0 276 267 130 20 chr12 110852466 110852612 -32933843 + MIR3 SINE MIR 44 205 -3 206 171 73 0 chr12 110853248 110853289 -32933166 - L2 LINE L2 -6 3266 3223 316 258 0 0 chr12 110853333 110853399 -32933056 + L2 LINE L2 3248 3313 0 676 285 6 12 chr12 110853563 110853728 -32932727 + MIR SINE MIR 33 196 -66 336 188 0 171 chr12 110854185 110854302 -32932153 - MER5A DNA MER1_type -38 151 55 1141 213 146 13 chr12 110855455 110855756 -32930699 + MER58B DNA MER1_type 1 341 0 947 242 13 22 chr12 110856126 110856353 -32930102 - MIR SINE MIR -7 255 31 617 188 12 16 chr12 110856518 110856768 -32929687 + CT-rich Low_complexity Low_complexity 1 249 0 188 322 58 11 chr12 110856804 110856891 -32929564 - L2 LINE L2 -2 3311 3221 277 229 0 33 chr12 110859110 110859171 -32927284 + L2 LINE L2 3168 3226 -46 254 323 54 32 chr12 110859201 110859294 -32927161 + MIR SINE MIR 46 140 -122 440 315 43 30 chr12 110859377 110859554 -32926901 + MIR SINE MIR 6 184 -69 550 279 81 22 chr12 110860552 110860774 -32925681 - MIR SINE MIR -27 235 1 198 0 0 0 chr12 110860827 110860849 -32925606 + (A)n Simple_repeat Simple_repeat 1 22 0 1739 86 0 0 chr12 110861034 110861278 -32925177 + AluY SINE Alu 63 306 -5 21 0 0 0 chr12 110861838 110861859 -32924596 + GC_rich Low_complexity Low_complexity 1 21 0 247 224 0 53 chr12 110861992 110862068 -32924387 + GA-rich Low_complexity Low_complexity 1 72 0 619 270 88 10 chr12 110862070 110862274 -32924181 - MIR SINE MIR -6 256 37 1883 119 36 0 chr12 110862461 110862739 -32923716 + AluSx SINE Alu 1 288 -24 246 32 0 0 chr12 110862742 110862773 -32923682 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 192 275 90 72 chr12 110863237 110863518 -32922937 - L2 LINE L2 -247 3025 2741 372 265 6 118 chr12 110863549 110863658 -32922797 + MIR3 SINE MIR 56 141 -67 634 251 0 27 chr12 110863658 110863841 -32922614 - MER5B DNA MER1_type 0 178 1 372 265 6 118 chr12 110863841 110863901 -32922554 + MIR3 SINE MIR 141 206 -2 2932 116 2 7 chr12 110863919 110864341 -32922114 + MER83 LTR ERV1 14 433 -15 345 258 170 31 chr12 110865228 110865422 -32921033 + MIR SINE MIR 1 221 -41 500 30 15 0 chr12 110865722 110865788 -32920667 + (TG)n Simple_repeat Simple_repeat 2 68 0 280 342 139 16 chr12 110866474 110866661 -32919794 + MIR SINE MIR 50 259 -3 1465 196 16 6 chr12 110866746 110867063 -32919392 - MER33 DNA MER1_type -2 322 3 343 355 8 0 chr12 110867137 110867261 -32919194 + L2 LINE L2 3147 3271 -1 2581 151 47 16 chr12 110867839 110868289 -32918166 - MLT1C LTR MaLR 0 467 4 4565 133 23 49 chr12 110868356 110868618 -32917837 + L1MA9 LINE L1 5478 5745 -567 1631 120 94 11 chr12 110868618 110868893 -32917562 + AluJb SINE Alu 1 298 -14 4565 133 23 49 chr12 110868893 110868951 -32917504 + L1MA9 LINE L1 5745 5803 -509 189 0 0 0 chr12 110868951 110868972 -32917483 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 4565 133 23 49 chr12 110868972 110869068 -32917387 + L1MA9 LINE L1 5803 5900 -412 2340 84 145 18 chr12 110869068 110869448 -32917007 + MSTA LTR MaLR 1 428 0 4565 133 23 49 chr12 110869448 110869885 -32916570 + L1MA9 LINE L1 5900 6311 -1 1417 163 32 4 chr12 110869947 110870199 -32916256 + AluJo SINE Alu 1 259 -53 32 26 0 0 chr12 110870203 110870242 -32916213 + AT_rich Low_complexity Low_complexity 1 39 0 378 214 0 0 chr12 110870305 110870394 -32916061 + (TG)n Simple_repeat Simple_repeat 2 90 0 757 281 16 48 chr12 110871170 110871322 -32915133 + MIR SINE MIR 1 143 -119 2093 122 0 3 chr12 110871322 110871625 -32914830 + AluSx SINE Alu 1 302 -10 757 281 16 48 chr12 110871625 110871721 -32914734 + MIR SINE MIR 143 241 -21 276 240 91 12 chr12 110871904 110872028 -32914427 + MER5B DNA MER1_type 1 176 -2 320 250 52 0 chr12 110872046 110872142 -32914313 + MER5A DNA MER1_type 9 109 -80 2279 81 0 3 chr12 110872145 110872441 -32914014 - AluSc SINE Alu -14 295 1 542 263 7 40 chr12 110873153 110873305 -32913150 + MIR SINE MIR 1 147 -115 758 300 60 9 chr12 110873337 110873570 -32912885 + MIR SINE MIR 8 252 -10 2196 105 0 10 chr12 110873571 110873884 -32912571 - AluSg SINE Alu 0 310 1 1914 164 0 34 chr12 110873889 110874212 -32912243 - AluJb SINE Alu 0 312 1 338 237 99 69 chr12 110874390 110874521 -32911934 - MIR SINE MIR -102 160 26 240 111 0 0 chr12 110876291 110876327 -32910128 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1469 182 99 28 chr12 110877083 110877500 -32908955 + MLT1D LTR MaLR 1 465 -2 875 172 30 12 chr12 110878338 110878507 -32907948 + MIR SINE MIR 65 236 -26 708 156 141 0 chr12 110878687 110878822 -32907633 - MER58B DNA MER1_type 0 341 188 335 326 79 11 chr12 110878855 110879033 -32907422 + MIR SINE MIR 36 225 -37 2250 79 7 33 chr12 110879107 110879410 -32907045 + AluSx SINE Alu 1 295 -17 409 297 9 0 chr12 110880246 110880357 -32906098 + MIR SINE MIR 134 245 -17 1781 194 50 13 chr12 110880389 110880765 -32905690 - MLT1B LTR MaLR 0 390 1 2353 99 0 0 chr12 110880981 110881283 -32905172 - AluSq SINE Alu -11 302 1 4578 117 33 8 chr12 110882229 110882958 -32903497 - L1MC1 LINE L1 0 6333 5587 189 107 0 0 chr12 110883327 110883355 -32903100 + (ATG)n Simple_repeat Simple_repeat 1 28 0 470 284 123 6 chr12 110883455 110883617 -32902838 - MIR SINE MIR -41 221 41 220 330 178 23 chr12 110884157 110884499 -32901956 + L2 LINE L2 2810 3204 -68 388 237 0 0 chr12 110884639 110884715 -32901740 + MIR SINE MIR 6 81 -181 811 216 117 10 chr12 110884715 110884979 -32901476 - MLT1E1 LTR MaLR 0 654 304 1034 132 23 96 chr12 110885011 110885088 -32901367 - Tigger5 DNA MER2_type 0 2323 2242 2113 132 0 7 chr12 110885088 110885376 -32901079 + AluSx SINE Alu 1 286 -26 1034 132 23 96 chr12 110885376 110885518 -32900937 - Tigger5 DNA MER2_type -81 2242 2120 1076 188 47 8 chr12 110885587 110885821 -32900634 - MLT1E1 LTR MaLR -411 243 1 714 224 121 6 chr12 110885821 110885986 -32900469 + MIR SINE MIR 77 260 -2 438 262 77 21 chr12 110887179 110887315 -32899140 + LTR16A1 LTR ERVL 211 367 -90 880 218 6 17 chr12 110887315 110887494 -32898961 - MER45A DNA AcHobo 0 178 2 438 262 77 21 chr12 110887494 110887590 -32898865 + LTR16A1 LTR ERVL 367 456 -1 249 300 66 92 chr12 110887598 110887915 -32898540 - L2 LINE L2 -44 3228 2920 2245 95 7 13 chr12 110889037 110889341 -32897114 - AluSx SINE Alu -10 302 1 384 221 135 10 chr12 110889636 110889740 -32896715 - L2 LINE L2 -5 3308 3192 492 211 141 35 chr12 110889767 110889909 -32896546 + L2 LINE L2 3155 3311 -2 219 69 0 0 chr12 110890559 110890588 -32895867 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 431 220 11 0 chr12 110890591 110890682 -32895773 + MER96 DNA MER1_type? 3 94 -81 398 272 40 8 chr12 110891694 110891819 -32894636 - MIR SINE MIR -106 156 28 1024 199 27 0 chr12 110892240 110892426 -32894029 + MIR SINE MIR 46 236 -26 2021 139 3 13 chr12 110892645 110892947 -32893508 + AluJb SINE Alu 1 299 -13 1340 24 0 30 chr12 110892949 110893116 -32893339 + L1PA4 LINE L1 5993 6154 -1 317 290 122 74 chr12 110893165 110893639 -32892816 + L2 LINE L2 2729 3246 -26 224 197 0 15 chr12 110893749 110893815 -32892640 + GA-rich Low_complexity Low_complexity 1 65 0 328 227 55 68 chr12 110893821 110893984 -32892471 - MER112 DNA MER1_type -83 177 17 379 151 62 130 chr12 110894891 110895037 -32891418 + L1M4 LINE L1 5678 5814 -360 1826 229 8 3 chr12 110895041 110895425 -32891030 - LTR31 LTR ERV1 -25 594 209 5122 160 49 31 chr12 110895425 110896400 -32890055 + L1MC2 LINE L1 5225 6222 -122 1880 209 126 77 chr12 110896400 110897188 -32889267 + LTR1B LTR ERV1 1 826 0 5122 160 49 31 chr12 110897188 110897314 -32889141 + L1MC2 LINE L1 6222 6344 0 687 272 142 43 chr12 110897397 110897489 -32888966 + L1ME4a LINE L1 5557 5638 -483 922 203 37 51 chr12 110897489 110897706 -32888749 + MER20 DNA MER1_type 4 217 -2 687 272 142 43 chr12 110897706 110897973 -32888482 + L1ME4a LINE L1 5638 5877 -244 1949 149 3 37 chr12 110897973 110898296 -32888159 - AluJb SINE Alu 0 312 1 687 272 142 43 chr12 110898296 110898449 -32888006 + L1ME4a LINE L1 5877 6121 0 1950 155 3 16 chr12 110898638 110898947 -32887508 + AluJo SINE Alu 1 305 -7 198 0 0 0 chr12 110899233 110899255 -32887200 + (CA)n Simple_repeat Simple_repeat 1 22 0 2519 70 10 0 chr12 110900541 110900843 -32885612 - AluY SINE Alu -6 305 1 447 234 55 23 chr12 110900911 110901039 -32885416 - MIR SINE MIR -85 177 46 268 318 42 108 chr12 110901738 110902048 -32884407 + L2 LINE L2 2840 3116 -156 1825 92 126 0 chr12 110902048 110902309 -32884146 + AluSc SINE Alu 1 294 -5 268 318 42 108 chr12 110902309 110902423 -32884032 + L2 LINE L2 3116 3236 -36 228 111 0 0 chr12 110902429 110902465 -32883990 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 382 281 45 0 chr12 110902466 110902555 -32883900 - L2 LINE L2 -13 3300 3208 323 265 29 66 chr12 110902628 110902764 -32883691 + L3 LINE CR1 1378 1508 -69 21 36 0 0 chr12 110902935 110902963 -32883492 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 110903113 110903143 -32883312 + AT_rich Low_complexity Low_complexity 1 30 0 1347 269 105 12 chr12 110903261 110903747 -32882708 - MLT1F LTR MaLR -7 535 5 397 227 75 101 chr12 110904051 110904124 -32882331 - LTR33 LTR ERVL -9 512 439 2180 120 13 13 chr12 110904124 110904425 -32882030 + AluSx SINE Alu 1 301 -11 397 227 75 101 chr12 110904425 110904742 -32881713 - LTR33 LTR ERVL -82 439 32 22 0 0 0 chr12 110904874 110904896 -32881559 + AT_rich Low_complexity Low_complexity 1 22 0 436 322 54 50 chr12 110904905 110905147 -32881308 - MIR SINE MIR 0 262 20 424 221 376 0 chr12 110906452 110906601 -32879854 + MIR SINE MIR 14 218 -44 300 286 59 17 chr12 110906800 110906919 -32879536 + L3 LINE CR1 832 955 -622 2368 172 14 0 chr12 110908578 110909015 -32877440 - L1MB2 LINE L1 0 6171 5729 622 251 32 85 chr12 110909208 110909455 -32877000 - MIR SINE MIR -1 261 28 289 185 222 0 chr12 110909666 110909747 -32876708 - L2 LINE L2 -6 3266 3168 332 235 12 12 chr12 110911548 110911629 -32874826 - MLT1J LTR MaLR -193 318 238 252 327 73 67 chr12 110912564 110912729 -32873726 - MIR SINE MIR -26 182 17 1419 182 47 71 chr12 110913776 110914156 -32872299 - MLT1B LTR MaLR -19 371 1 1175 261 4 0 chr12 110914337 110914586 -32871869 - MIR SINE MIR 0 262 13 613 192 66 42 chr12 110914781 110914948 -32871507 + MIR SINE MIR 48 218 -44 1411 167 30 46 chr12 110915049 110915280 -32871175 + MER33 DNA MER1_type 1 227 -2358 1955 136 0 52 chr12 110915280 110915588 -32870867 + AluJo SINE Alu 1 292 -20 1411 167 30 46 chr12 110915588 110915685 -32870770 + MER33 DNA MER1_type 227 324 0 420 244 11 11 chr12 110915709 110915799 -32870656 + L2 LINE L2 3173 3262 -10 442 299 58 7 chr12 110916679 110916833 -32869622 + MIR SINE MIR 47 208 -54 1341 159 7 113 chr12 110916841 110916982 -32869473 + AluJb SINE Alu 1 95 -217 189 0 0 0 chr12 110916982 110917003 -32869452 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1341 159 7 113 chr12 110917003 110917163 -32869292 + AluJb SINE Alu 95 270 -42 201 244 0 0 chr12 110917704 110917745 -32868710 + L2 LINE L2 3216 3256 -16 590 241 52 42 chr12 110917789 110917980 -32868475 + MIR SINE MIR 20 212 -50 471 258 82 19 chr12 110918932 110919199 -32867256 - L1ME4a LINE L1 0 6121 5838 285 98 0 0 chr12 110919450 110919491 -32866964 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 331 320 53 47 chr12 110920755 110920905 -32865550 + MIR SINE MIR 32 182 -80 468 269 57 0 chr12 110921095 110921236 -32865219 + MIR SINE MIR 113 261 -1 2446 82 3 3 chr12 110921366 110921714 -32864741 - AluSc SINE Alu 0 348 1 235 271 106 24 chr12 110922520 110922605 -32863850 + L2 LINE L2 3171 3262 -10 520 294 45 6 chr12 110923200 110923377 -32863078 + MIR SINE MIR 34 217 -45 468 228 101 34 chr12 110923410 110923559 -32862896 + MER5B DNA MER1_type 19 177 -1 601 236 16 114 chr12 110923625 110923879 -32862576 + MIR SINE MIR 25 253 -9 216 317 73 0 chr12 110923877 110923959 -32862496 - MIR SINE MIR -49 213 126 * 387 297 40 20 chr12 110925234 110925382 -32861073 + MIR SINE MIR 16 166 -96 480 268 132 29 chr12 110925386 110925591 -32860864 + MIR SINE MIR 31 256 -6 630 198 9 7 chr12 110926068 110926526 -32859929 + (CA)n Simple_repeat Simple_repeat 1 459 0 384 303 191 0 chr12 110926889 110927051 -32859404 + MIR SINE MIR 33 225 -37 285 109 0 0 chr12 110927325 110927371 -32859084 + (TC)n Simple_repeat Simple_repeat 1 46 0 1243 218 201 17 chr12 110928503 110928912 -32857543 - MLT1D LTR MaLR -17 488 5 915 213 10 20 chr12 110929008 110929205 -32857250 + MIR SINE MIR 68 262 0 285 98 0 0 chr12 110929357 110929398 -32857057 + MIR SINE MIR 80 120 -142 787 234 69 65 chr12 110929921 110930182 -32856273 - MIR SINE MIR 0 262 1 357 180 259 43 chr12 110930447 110930586 -32855869 + MIR SINE MIR 81 249 -13 605 233 168 15 chr12 110931219 110931421 -32855034 + MIR SINE MIR 13 245 -17 256 300 139 28 chr12 110931399 110931579 -32854876 - MIR SINE MIR -34 228 29 * 1879 190 114 26 chr12 110931737 110932021 -32854434 - MLT1D LTR MaLR -1 504 162 2206 86 36 0 chr12 110932021 110932299 -32854156 - AluSc SINE Alu -21 288 1 1879 190 114 26 chr12 110932299 110932477 -32853978 - MLT1D LTR MaLR -343 162 1 238 320 139 0 chr12 110932649 110932771 -32853684 + MIR SINE MIR 124 262 0 800 275 130 12 chr12 110933405 110933750 -32852705 + L2 LINE L2 2819 3204 -109 349 316 29 50 chr12 110933896 110934035 -32852420 + L2 LINE L2 3168 3303 -10 403 186 255 0 chr12 110934041 110934143 -32852312 - MIR SINE MIR -22 240 113 320 255 155 25 chr12 110934366 110934527 -32851928 - MIR SINE MIR 0 262 81 457 287 60 27 chr12 110934688 110934838 -32851617 - MIR SINE MIR -85 177 23 416 282 145 36 chr12 110935641 110936103 -32850352 - L2 LINE L2 0 3313 2778 706 240 82 25 chr12 110936455 110936651 -32849804 + MIR SINE MIR 16 222 -40 1622 177 83 10 chr12 110936823 110937195 -32849260 + L1MB8 LINE L1 5774 6333 -1 581 162 0 30 chr12 110937249 110937348 -32849107 + AluJb SINE Alu 87 182 -130 2579 58 0 10 chr12 110937416 110937729 -32848726 - AluY SINE Alu -1 310 1 651 112 0 0 chr12 110939853 110939951 -32846504 + (TGGA)n Simple_repeat Simple_repeat 1 98 0 260 217 14 58 chr12 110939985 110940054 -32846401 + MIR SINE MIR 86 151 -111 267 93 0 0 chr12 110940118 110940161 -32846294 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 2165 101 0 17 chr12 110940162 110940449 -32846006 - AluSx SINE Alu -30 282 1 444 291 153 11 chr12 110941091 110941280 -32845175 + MIR SINE MIR 37 252 -10 1581 187 9 29 chr12 110941542 110941858 -32844597 + AluJo SINE Alu 1 310 -2 2340 118 0 0 chr12 110942243 110942556 -32843899 - AluSq SINE Alu 0 313 1 771 246 44 10 chr12 110942993 110943196 -32843259 - MIR SINE MIR -12 250 41 493 317 43 29 chr12 110943894 110944102 -32842353 - MIR SINE MIR -50 212 2 448 212 28 55 chr12 110944214 110944431 -32842024 + L1ME4a LINE L1 5647 5857 -264 584 140 21 0 chr12 110944451 110944544 -32841911 + FLAM_A SINE Alu 2 96 -46 396 282 70 70 chr12 110944571 110944798 -32841657 + L1ME4a LINE L1 5874 6100 -21 217 307 63 16 chr12 110945153 110945280 -32841175 - L2 LINE L2 -2 3270 3138 2080 131 3 10 chr12 110946152 110946458 -32839997 + AluJb SINE Alu 1 304 -8 236 324 118 0 chr12 110946683 110946785 -32839670 + MIR SINE MIR 30 143 -65 2201 111 0 7 chr12 110947098 110947396 -32839059 - AluSc SINE Alu -13 296 1 542 245 97 13 chr12 110947984 110948139 -32838316 - MIR SINE MIR 0 262 95 276 232 0 0 chr12 110948139 110948195 -32838260 - MLT1B LTR MaLR 0 390 335 1965 124 8 77 chr12 110948195 110948559 -32837896 + MER1B DNA MER1_type 1 339 0 1762 172 11 44 chr12 110948559 110948901 -32837554 - MLT1B LTR MaLR -55 335 6 257 221 208 13 chr12 110948905 110948982 -32837473 - MIR SINE MIR -166 96 5 547 233 25 0 chr12 110948996 110949116 -32837339 + MER94 DNA DNA 8 130 -4 601 209 30 132 chr12 110949141 110949376 -32837079 - L2 LINE L2 -83 3189 2979 505 211 23 11 chr12 110949511 110949688 -32836767 - MER58 DNA MER1_type -13 2407 24 292 295 90 39 chr12 110949810 110949966 -32836489 + MIR SINE MIR 18 181 -81 180 398 12 12 chr12 110949974 110950057 -32836398 - L2 LINE L2 -2 3270 3188 300 352 25 25 chr12 110950667 110950826 -32835629 + MIR SINE MIR 31 189 -73 184 296 0 0 chr12 110950831 110950875 -32835580 - MIR SINE MIR -3 259 216 229 306 0 0 chr12 110950958 110951007 -32835448 - MIR SINE MIR -213 49 1 285 29 0 0 chr12 110951055 110951089 -32835366 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 295 152 38 chr12 110951097 110951202 -32835253 - L2 LINE L2 -1 3271 3155 2052 106 0 86 chr12 110951963 110952302 -32834153 + AluSx SINE Alu 1 310 -2 333 338 0 0 chr12 110952570 110952703 -32833752 - L1ME LINE L1 -349 5813 5681 2410 126 167 5 chr12 110952820 110953257 -32833198 + MLT2B2 LTR ERVL 1 508 -7 274 263 71 114 chr12 110953569 110953919 -32832536 + L2 LINE L2 2548 2882 -432 239 364 74 25 chr12 110954100 110954221 -32832234 + L2 LINE L2 3180 3306 -7 588 269 32 19 chr12 110954672 110954828 -32831627 + MER5A DNA MER1_type 27 184 -5 1192 171 99 33 chr12 110954841 110955145 -32831310 + MER33 DNA MER1_type 1 324 0 225 224 176 12 chr12 110955354 110955439 -32831016 - L1M2a LINE L1 -5266 1902 1804 795 314 32 16 chr12 110956038 110956290 -32830165 + MIR SINE MIR 7 262 0 1601 108 5 0 chr12 110956437 110956641 -32829814 + AluSc SINE Alu 1 205 -104 305 283 41 44 chr12 110956741 110956874 -32829581 - MIR SINE MIR -57 151 16 382 136 45 23 chr12 110957121 110957209 -32829246 + L3 LINE CR1 1403 1492 -85 669 241 96 22 chr12 110957857 110958077 -32828378 - MIR SINE MIR 0 262 22 423 222 50 10 chr12 110958725 110958824 -32827631 + L2 LINE L2 3211 3313 0 785 257 217 19 chr12 110958857 110959496 -32826959 + L2 LINE L2 2249 3047 -266 197 179 54 36 chr12 110959497 110959553 -32826902 + MIR SINE MIR 174 230 -32 198 304 38 25 chr12 110959619 110959698 -32826757 + L2 LINE L2 3229 3308 -5 422 309 105 16 chr12 110960854 110961045 -32825410 + MIR SINE MIR 32 239 -23 308 250 45 76 chr12 110961111 110961243 -32825212 - L2 LINE L2 -78 3235 3108 1973 146 30 0 chr12 110961246 110961541 -32824914 + AluSx SINE Alu 1 304 -8 896 176 26 7 chr12 110961544 110961697 -32824758 + AluJo/FRAM SINE Alu 130 285 -27 2148 80 7 14 chr12 110961726 110962012 -32824443 + AluSx SINE Alu 20 303 -9 219 69 0 0 chr12 110962038 110962067 -32824388 + (TGGG)n Simple_repeat Simple_repeat 2 30 0 * 231 36 0 0 chr12 110962066 110962094 -32824361 + (GA)n Simple_repeat Simple_repeat 1 28 0 277 239 14 0 chr12 110962097 110962168 -32824287 - L2 LINE L2 -247 3066 2995 473 331 148 32 chr12 110962598 110962876 -32823579 + L2 LINE L2 2960 3269 -3 451 248 67 20 chr12 110962919 110963068 -32823387 - MER112 DNA MER1_type -6 254 99 207 254 0 18 chr12 110963343 110963398 -32823057 + (CA)n Simple_repeat Simple_repeat 2 55 0 440 335 0 11 chr12 110963409 110963588 -32822867 + (CA)n Simple_repeat Simple_repeat 2 178 0 402 277 71 39 chr12 110963801 110963956 -32822499 + MIR SINE MIR 25 184 -78 222 333 154 12 chr12 110963964 110964126 -32822329 + MIR SINE MIR 8 192 -70 195 250 0 0 chr12 110965157 110965201 -32821254 - MIR SINE MIR -70 192 149 592 193 40 60 chr12 110965293 110965443 -32821012 + L1MB7 LINE L1 5916 6062 -122 461 145 0 0 chr12 110965436 110965512 -32820943 + L1MB8 LINE L1 6098 6173 -5 * 1776 171 3 13 chr12 110965524 110965823 -32820632 + AluJo SINE Alu 1 296 -16 33 0 0 0 chr12 110967318 110967351 -32819104 + AT_rich Low_complexity Low_complexity 1 33 0 379 346 102 15 chr12 110967715 110967920 -32818535 - MIR SINE MIR -11 251 29 364 286 116 9 chr12 110968034 110968156 -32818299 - MIR3 SINE MIR -49 159 24 321 89 0 0 chr12 110970158 110970203 -32816252 + (ATG)n Simple_repeat Simple_repeat 3 47 0 628 201 26 12 chr12 110970344 110970483 -32815972 + MIR SINE MIR 25 161 -63 286 264 90 76 chr12 110970601 110970692 -32815763 + MIR SINE MIR 47 142 -120 2322 96 0 29 chr12 110970692 110971006 -32815449 + AluSx SINE Alu 1 305 -7 286 264 90 76 chr12 110971006 110971058 -32815397 + MIR SINE MIR 142 192 -70 * 398 267 119 45 chr12 110971052 110971254 -32815201 - MIR SINE MIR 0 262 46 814 231 149 0 chr12 110971899 110972107 -32814348 + MIR SINE MIR 2 240 -22 310 289 231 0 chr12 110972139 110972260 -32814195 + L2 LINE L2 3123 3271 -1 736 132 16 0 chr12 110972408 110972529 -32813926 - MLT1D LTR MaLR -4 501 379 736 191 95 111 chr12 110972544 110972875 -32813580 - MLT1D LTR MaLR -192 320 1 2161 106 3 0 chr12 110973101 110973409 -32813046 + AluSg SINE Alu 1 309 0 1231 101 0 0 chr12 110973409 110973567 -32812888 + AluSg/x SINE Alu 131 288 -22 26 0 0 0 chr12 110973567 110973593 -32812862 + AT_rich Low_complexity Low_complexity 1 26 0 941 277 8 8 chr12 110973699 110973934 -32812521 - MIR SINE MIR -8 254 20 256 370 7 22 chr12 110973963 110974101 -32812354 - MIR SINE MIR -56 206 71 490 303 103 15 chr12 110975814 110976009 -32810446 - MIR SINE MIR -12 250 39 201 143 0 0 chr12 110976898 110976933 -32809522 + (CA)n Simple_repeat Simple_repeat 1 35 0 341 219 10 128 chr12 110976979 110977149 -32809306 + MIR SINE MIR 47 195 -63 1434 184 86 4 chr12 110977609 110977765 -32808690 - AluJb SINE Alu -23 289 147 312 27 0 0 chr12 110977765 110977802 -32808653 + (TG)n Simple_repeat Simple_repeat 1 37 0 1434 184 86 4 chr12 110977802 110977912 -32808543 - AluJb SINE Alu -165 147 1 230 205 82 139 chr12 110978815 110978937 -32807518 - MIR SINE MIR -73 189 75 273 200 53 13 chr12 110979435 110979510 -32806945 + L1MB3 LINE L1 5786 5863 -320 541 304 120 5 chr12 110979577 110979794 -32806661 - L2 LINE L2 -500 2814 2573 1125 170 107 14 chr12 110979797 110980086 -32806369 + L1MB3 LINE L1 5861 6176 -7 666 174 99 6 chr12 110980405 110980566 -32805889 - MER53 DNA DNA -13 176 1 368 313 37 0 chr12 110980678 110980812 -32805643 + MIR SINE MIR 53 191 -71 372 296 104 0 chr12 110980961 110981086 -32805369 + MIR3 SINE MIR 43 180 -28 25 0 0 0 chr12 110981121 110981146 -32805309 + AT_rich Low_complexity Low_complexity 1 25 0 233 298 18 0 chr12 110983183 110983240 -32803215 + L2 LINE L2 3215 3272 0 351 274 150 9 chr12 110983322 110983435 -32803020 - L2 LINE L2 -1 3312 3184 202 244 0 0 chr12 110983657 110983702 -32802753 + (TAA)n Simple_repeat Simple_repeat 3 47 0 188 271 127 17 chr12 110984844 110984962 -32801493 + MIR SINE MIR 70 200 -62 271 264 187 11 chr12 110985046 110985137 -32801318 - MER5A DNA MER1_type -32 157 51 712 297 18 14 chr12 110985796 110986015 -32800440 + MIR SINE MIR 35 254 -8 259 260 177 0 chr12 110986211 110986307 -32800148 - L2 LINE L2 -232 3040 2928 240 269 77 0 chr12 110987239 110987317 -32799138 + MIR SINE MIR 102 185 -77 245 309 93 0 chr12 110987465 110987562 -32798893 - L2 LINE L2 -20 3252 3147 506 278 122 10 chr12 110988557 110988762 -32797693 - MIR SINE MIR -33 229 2 205 268 54 0 chr12 110989118 110989174 -32797281 - MIR SINE MIR -6 256 198 520 114 13 0 chr12 110989195 110989274 -32797181 - MADE1 DNA Mariner 0 80 1 601 181 17 26 chr12 110989274 110989390 -32797065 - MIR SINE MIR -111 151 37 22 35 0 0 chr12 110989823 110989852 -32796603 + AT_rich Low_complexity Low_complexity 1 29 0 325 291 43 43 chr12 110990009 110990126 -32796329 - MIR3 SINE MIR -46 162 46 339 331 88 7 chr12 110990605 110990732 -32795723 - L2 LINE L2 -9 3263 3126 822 278 69 12 chr12 110990732 110990977 -32795478 + MIR SINE MIR 1 259 -3 222 300 0 0 chr12 110991910 110991960 -32794495 + polypurine Low_complexity Low_complexity 2 51 0 501 335 69 5 chr12 110992905 110993108 -32793347 + MIR SINE MIR 16 231 -31 382 309 173 0 chr12 110994227 110994389 -32792066 - MIR SINE MIR -70 192 3 838 213 30 0 chr12 110995038 110995207 -32791248 - MIR SINE MIR -87 175 2 424 306 34 34 chr12 110995324 110995530 -32790925 - MIR SINE MIR -49 213 8 444 288 68 0 chr12 110996110 110996256 -32790199 + MIR3 SINE MIR 47 202 -6 317 316 26 72 chr12 110997383 110997576 -32788879 + MER5A DNA MER1_type 6 189 0 710 284 0 0 chr12 110997657 110997819 -32788636 - MIR SINE MIR -13 249 88 386 244 147 30 chr12 110998688 110998885 -32787570 - L2 LINE L2 0 3313 3094 7861 160 6 10 chr12 110999225 111000454 -32786001 - L1PA13 LINE L1 -4 6159 4926 396 0 0 0 chr12 111000454 111000498 -32785957 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2252 105 0 0 chr12 111000498 111000783 -32785672 - AluSx SINE Alu -27 285 1 7861 160 6 10 chr12 111000783 111001687 -32784768 - L1PA13 LINE L1 -1235 4928 4014 242 320 10 10 chr12 111001689 111001789 -32784666 + Charlie8 DNA MER1_type 139 238 -2179 188 175 75 0 chr12 111002558 111002598 -32783857 - MIR SINE MIR -81 127 85 405 162 54 72 chr12 111002686 111002797 -32783658 + MER5B DNA MER1_type 68 176 -2 691 235 195 5 chr12 111002865 111003065 -32783390 + MIR SINE MIR 24 261 -1 313 143 0 0 chr12 111003898 111003947 -32782508 + MER5A DNA MER1_type 3 51 -138 856 250 53 35 chr12 111003947 111004392 -32782063 + MLT1B LTR MaLR 1 380 -10 773 184 21 21 chr12 111004395 111004536 -32781919 + MER5A DNA MER1_type 49 189 0 2429 96 0 6 chr12 111006039 111006353 -32780102 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 111006371 111006394 -32780061 + AT_rich Low_complexity Low_complexity 1 23 0 35 63 0 0 chr12 111006450 111006513 -32779942 + AT_rich Low_complexity Low_complexity 1 63 0 358 250 45 0 chr12 111007354 111007442 -32779013 - MIR SINE MIR -85 177 86 1899 207 46 7 chr12 111007616 111008050 -32778405 - MLT1C LTR MaLR -4 463 13 2112 105 0 3 chr12 111008105 111008438 -32778017 - AluSx SINE Alu 0 332 1 434 299 55 0 chr12 111008515 111008642 -32777813 - L2 LINE L2 0 3313 3180 263 246 107 25 chr12 111008647 111008769 -32777686 + MIR3 SINE MIR 2 133 -75 339 271 75 53 chr12 111008898 111009031 -32777424 + MIR SINE MIR 126 261 -1 739 211 86 62 chr12 111009881 111010304 -32776151 - MLT1H LTR MaLR -5 544 57 2105 129 13 13 chr12 111011113 111011422 -32775033 + AluSq SINE Alu 1 309 -4 270 0 0 0 chr12 111012152 111012182 -32774273 + (TG)n Simple_repeat Simple_repeat 2 31 0 1773 180 3 0 chr12 111012182 111012466 -32773989 - AluJo SINE Alu -27 285 1 22 56 0 0 chr12 111013698 111013734 -32772721 + AT_rich Low_complexity Low_complexity 1 36 0 382 196 175 10 chr12 111014157 111014254 -32772201 - L2 LINE L2 -1 3312 3200 381 254 116 14 chr12 111014474 111014612 -32771843 + MER117 DNA MER1_type 11 162 -35 23 33 0 0 chr12 111015055 111015085 -32771370 + AT_rich Low_complexity Low_complexity 1 30 0 404 197 71 55 chr12 111015634 111015761 -32770694 + MER103 DNA DNA 38 166 0 333 0 0 0 chr12 111017084 111017121 -32769334 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 232 0 36 chr12 111017951 111018007 -32768448 - MIR SINE MIR -189 73 20 2327 100 3 0 chr12 111018165 111018464 -32767991 - AluSc SINE Alu -9 300 1 909 166 25 6 chr12 111018564 111018721 -32767734 - FRAM SINE Alu -19 157 1 2510 71 0 26 chr12 111019450 111019760 -32766695 - AluSc SINE Alu -7 302 1 206 298 26 88 chr12 111020406 111020520 -32765935 + MIR3 SINE MIR 54 160 -48 21 0 0 0 chr12 111020893 111020914 -32765541 + AT_rich Low_complexity Low_complexity 1 21 0 2257 85 0 39 chr12 111021091 111021435 -32765020 - AluY SINE Alu 0 311 1 338 241 121 54 chr12 111021811 111021925 -32764530 - MIR SINE MIR -5 257 127 2278 88 74 37 chr12 111021925 111022276 -32764179 + THE1B LTR MaLR 1 364 0 338 241 121 54 chr12 111022276 111022327 -32764128 - MIR SINE MIR -135 127 81 252 257 14 68 chr12 111023048 111023122 -32763333 - L2 LINE L2 0 3272 3203 283 299 0 0 chr12 111023318 111023385 -32763070 + MER20 DNA MER1_type 152 218 -1 196 359 24 36 chr12 111023393 111023641 -32762814 - L2 LINE L2 -775 2539 2295 440 231 220 6 chr12 111023652 111023801 -32762654 + MER5A DNA MER1_type 4 189 0 372 232 98 87 chr12 111023853 111023902 -32762553 - MIR SINE MIR -60 202 155 302 291 80 106 chr12 111023902 111024101 -32762354 + MER91A DNA MER1_type 1 194 -2 372 232 98 87 chr12 111024101 111024113 -32762342 - MIR SINE MIR -107 155 145 1357 231 34 3 chr12 111024113 111024437 -32762018 + MER46C DNA MER2_type 5 338 0 372 232 98 87 chr12 111024437 111024541 -32761914 - MIR SINE MIR -117 145 42 189 0 0 0 chr12 111024608 111024629 -32761826 + (T)n Simple_repeat Simple_repeat 1 21 0 243 122 0 0 chr12 111025528 111025569 -32760886 - L1M LINE L1 -804 5370 5330 * 3618 223 52 57 chr12 111025567 111027797 -32758658 - L1MEc LINE L1 -888 5327 2289 1758 158 14 0 chr12 111027797 111028081 -32758374 - AluJo SINE Alu -24 288 1 3618 223 52 57 chr12 111028081 111028727 -32757728 - L1MEc LINE L1 -3926 2289 1642 2141 283 59 34 chr12 111028752 111029089 -32757366 - L1MEc LINE L1 -5084 1312 985 234 0 0 0 chr12 111029089 111029115 -32757340 + (TG)n Simple_repeat Simple_repeat 2 27 0 2141 283 59 34 chr12 111029115 111030020 -32756435 - L1MEc LINE L1 -5411 985 39 241 311 33 33 chr12 111030207 111030358 -32756097 - L1ME LINE L1 -462 5659 5509 192 125 0 0 chr12 111030727 111030759 -32755696 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1786 156 80 0 chr12 111030775 111031064 -32755391 - AluJb SINE Alu 0 312 1 327 287 16 57 chr12 111031245 111031367 -32755088 + L2 LINE L2 3187 3303 -10 201 314 143 0 chr12 111033084 111033189 -32753266 + L2 LINE L2 3170 3289 -24 1008 227 172 0 chr12 111033798 111034089 -32752366 + MER2 DNA MER2_type 2 342 -2 807 237 143 45 chr12 111034461 111035019 -32751436 + HAL1 LINE L1 817 1429 -1078 219 173 19 0 chr12 111035662 111035714 -32750741 + (CA)n Simple_repeat Simple_repeat 2 54 0 925 239 87 84 chr12 111035802 111036738 -32749717 - MER52A LTR ERV1 -5 1750 287 409 287 30 0 chr12 111036883 111036984 -32749471 - L2 LINE L2 0 3313 3210 1727 273 104 0 chr12 111037002 111037500 -32748955 - L2 LINE L2 -346 2968 2419 719 271 120 0 chr12 111037532 111037757 -32748698 - MIR SINE MIR 0 262 11 329 181 12 72 chr12 111037769 111037852 -32748603 - L2 LINE L2 -911 2403 2326 1116 220 121 52 chr12 111037852 111038342 -32748113 - MLT1F1 LTR MaLR 0 567 31 275 292 42 0 chr12 111038346 111038418 -32748037 - L2 LINE L2 -995 2319 2245 251 269 37 28 chr12 111038449 111038557 -32747898 - LTR67 LTR ERVL -97 460 352 229 301 89 42 chr12 111038895 111039344 -32747111 + HAL1 LINE L1 968 1437 -1070 195 190 138 0 chr12 111039344 111039402 -32747053 - L2 LINE L2 -549 2765 2700 832 217 119 13 chr12 111039412 111039638 -32746817 - MIR SINE MIR -2 260 11 359 253 58 63 chr12 111039642 111039816 -32746639 + HAL1 LINE L1 1506 1678 -829 310 259 61 0 chr12 111039837 111039984 -32746471 + (TA)n Simple_repeat Simple_repeat 1 156 0 499 195 188 60 chr12 111040984 111041133 -32745322 + MER5A DNA MER1_type 16 183 -6 1624 182 49 3 chr12 111041255 111041563 -32744892 - MSTD LTR MaLR -74 322 1 2061 184 66 10 chr12 111042477 111042969 -32743486 + MER54A LTR ERVL 79 886 -15 752 157 0 0 chr12 111043060 111043181 -32743274 + FLAM_C SINE Alu 1 121 -12 2020 153 0 7 chr12 111043965 111044273 -32742182 + AluSx SINE Alu 1 306 -6 1225 251 78 21 chr12 111044456 111044878 -32741577 - MER74B LTR ERVL -56 566 121 26 0 0 0 chr12 111044939 111044965 -32741490 + AT_rich Low_complexity Low_complexity 1 26 0 1101 91 10 111 chr12 111045020 111045079 -32741376 - L1PB1 LINE L1 -9 6142 6079 2353 82 0 7 chr12 111045079 111045385 -32741070 - AluSx SINE Alu -6 306 3 1101 91 10 111 chr12 111045385 111045533 -32740922 - L1PB1 LINE L1 -72 6079 5956 225 0 0 0 chr12 111045599 111045624 -32740831 + (TA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr12 111045624 111045649 -32740806 + (T)n Simple_repeat Simple_repeat 1 25 0 247 209 171 29 chr12 111046025 111046130 -32740325 + MER5B DNA MER1_type 59 178 0 429 259 54 29 chr12 111046857 111047062 -32739393 - L1ME4a LINE L1 -236 5885 5676 248 0 31 0 chr12 111048081 111048113 -32738342 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 177 10 52 chr12 111048615 111048711 -32737744 + MLT1J2 LTR MaLR 15 106 -344 252 155 129 43 chr12 111049562 111049678 -32736777 - L1ME4a LINE L1 -13 6108 5983 307 255 71 0 chr12 111049699 111049797 -32736658 - L1ME4a LINE L1 -218 5903 5799 1804 161 20 13 chr12 111049828 111050127 -32736328 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 111050246 111050275 -32736180 + AT_rich Low_complexity Low_complexity 1 29 0 838 250 103 48 chr12 111050345 111050781 -32735674 - L1MC4a LINE L1 -1723 6085 5626 612 40 0 0 chr12 111051884 111051959 -32734496 + (TG)n Simple_repeat Simple_repeat 1 75 0 809 241 37 0 chr12 111051960 111052151 -32734304 - MER58A DNA MER1_type -26 198 1 736 266 184 3 chr12 111052198 111052518 -32733937 - L1MC4a LINE L1 -2176 5632 5255 316 184 40 0 chr12 111052524 111052600 -32733855 - L1MEc LINE L1 -3459 2756 2678 1492 264 57 21 chr12 111052600 111053036 -32733419 - L2 LINE L2 -977 2337 1886 1113 191 32 73 chr12 111053039 111053448 -32733007 + MER65A-int LTR ERV1 2044 2435 -4323 827 172 32 41 chr12 111053675 111053896 -32732559 + MER65A-int LTR ERV1 3512 3730 -2868 1458 159 127 86 chr12 111053976 111054886 -32731569 + MER65A-int LTR ERV1 3730 4699 -1632 254 249 11 50 chr12 111055733 111055914 -32730541 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 * 369 295 0 22 chr12 111055786 111055969 -32730486 + G-rich Low_complexity Low_complexity 1 179 0 356 185 134 34 chr12 111057272 111057391 -32729064 - L1MEc LINE L1 -5298 1098 968 1155 98 6 0 chr12 111057556 111057739 -32728716 - L1MA8 LINE L1 0 6291 6108 1104 178 32 94 chr12 111057739 111058048 -32728407 + Tigger3(Golem) DNA MER2_type 3 292 -2737 3351 121 63 15 chr12 111058098 111058716 -32727739 + Tigger3(Golem) DNA MER2_type 2361 3008 -21 360 211 48 109 chr12 111058819 111058966 -32727489 + L1MEd LINE L1 1011 1148 -4971 2211 103 0 0 chr12 111058981 111059289 -32727166 + AluSg SINE Alu 1 308 0 749 295 98 7 chr12 111059295 111060010 -32726445 + L1MEd LINE L1 2500 3279 -2850 25 31 0 0 chr12 111060798 111060830 -32725625 + AT_rich Low_complexity Low_complexity 1 32 0 470 240 36 86 chr12 111061639 111061918 -32724537 - L1ME3 LINE L1 -222 5940 5676 470 234 8 0 chr12 111061945 111062069 -32724386 - Charlie4 DNA MER1_type -1 1960 1836 183 123 0 137 chr12 111062088 111062161 -32724294 - MER5C DNA MER1_type -135 189 127 2238 97 0 10 chr12 111062345 111062645 -32723810 + AluSq SINE Alu 1 297 -16 303 100 140 0 chr12 111062887 111062937 -32723518 + MER65A-int LTR ERV1 5336 5392 -939 5498 199 61 5 chr12 111062947 111064149 -32722306 + MER65A-int LTR ERV1 3603 4871 0 2466 124 35 49 chr12 111064149 111064600 -32721855 + MER65A LTR ERV1 1 445 0 874 277 131 3 chr12 111064647 111064976 -32721479 - L2 LINE L2 -2017 1297 927 329 316 48 49 chr12 111066049 111066226 -32720229 + MIR SINE MIR 19 191 -51 26 30 0 0 chr12 111067117 111067150 -32719305 + AT_rich Low_complexity Low_complexity 1 33 0 1262 137 0 0 chr12 111067163 111067345 -32719110 + AluSg/x SINE Alu 129 310 0 180 0 0 0 chr12 111067519 111067539 -32718916 + (CA)n Simple_repeat Simple_repeat 1 20 0 1286 105 0 0 chr12 111067690 111067862 -32718593 + AluSg/x SINE Alu 141 312 0 180 0 0 0 chr12 111068036 111068056 -32718399 + (CA)n Simple_repeat Simple_repeat 1 20 0 274 289 107 13 chr12 111069368 111069527 -32716928 - L2 LINE L2 -1293 2021 1848 9279 28 1 0 chr12 111069756 111071631 -32714824 - L1PA4 LINE L1 -3 6152 4277 1277 179 94 122 chr12 111072197 111072673 -32713782 + MLT1D LTR MaLR 43 505 0 181 324 105 29 chr12 111073931 111074036 -32712419 - L2 LINE L2 -18 3295 3183 486 96 0 96 chr12 111074223 111074317 -32712138 - MER2 DNA MER2_type -260 85 1 571 259 93 82 chr12 111074324 111074860 -32711595 - L1MEd LINE L1 -5574 545 4 235 203 0 34 chr12 111074860 111074919 -32711536 + T-rich Low_complexity Low_complexity 2 58 0 541 209 117 11 chr12 111074983 111075137 -32711318 + MIR SINE MIR 3 169 -63 22 56 0 0 chr12 111075326 111075362 -32711093 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr12 111075651 111075690 -32710765 + AT_rich Low_complexity Low_complexity 1 39 0 572 280 32 16 chr12 111076370 111076559 -32709896 - MIR SINE MIR -7 255 64 1510 152 76 4 chr12 111076716 111077005 -32709450 - AluJb SINE Alu 0 308 1 21 36 0 0 chr12 111077007 111077035 -32709420 + AT_rich Low_complexity Low_complexity 1 28 0 881 262 145 14 chr12 111077098 111077526 -32708929 - HAL1 LINE L1 -566 1941 1458 329 248 271 15 chr12 111077529 111077662 -32708793 - MIR SINE MIR 0 262 96 609 346 128 20 chr12 111077754 111078208 -32708247 - HAL1 LINE L1 -1860 647 145 271 313 113 0 chr12 111078512 111078707 -32707748 - L1ME LINE L1 -301 5869 5653 409 220 102 42 chr12 111078866 111078984 -32707471 - L1P5 LINE L1 -516 5635 5511 323 296 88 10 chr12 111079003 111079146 -32707309 + MIR SINE MIR 15 167 -41 241 318 23 0 chr12 111079159 111079247 -32707208 + MIR SINE MIR 98 187 -75 629 183 10 0 chr12 111079255 111079359 -32707096 - MER58A DNA MER1_type 0 109 5 27 49 0 0 chr12 111079484 111079525 -32706930 + AT_rich Low_complexity Low_complexity 1 41 0 229 328 138 88 chr12 111079648 111080112 -32706343 - L3 LINE CR1 -126 1451 965 189 219 244 49 chr12 111080176 111080258 -32706197 - MIR SINE MIR -117 145 48 526 236 217 0 chr12 111080706 111080918 -32705537 - MIR SINE MIR -2 260 3 5358 34 0 0 chr12 111081000 111081651 -32704804 + L1P LINE L1 3317 3967 -2179 1553 195 64 20 chr12 111082065 111082471 -32703984 + L1M4 LINE L1 4782 5205 -941 667 257 16 0 chr12 111082473 111082660 -32703795 + L1MA9 LINE L1 6057 6246 -66 4452 124 45 48 chr12 111082728 111083505 -32702950 + LTR1 LTR ERV1 11 785 0 18175 149 19 12 chr12 111083505 111086506 -32699949 + HUERS-P2 LTR ERV1 1 3084 -4 4617 106 47 46 chr12 111086552 111087332 -32699123 + LTR1 LTR ERV1 5 785 0 519 150 75 38 chr12 111087376 111087509 -32698946 + L1M4 LINE L1 5190 5327 -819 1482 203 70 3 chr12 111087675 111087991 -32698464 + MER58B DNA MER1_type 4 340 -1 430 356 51 23 chr12 111088098 111088156 -32698299 + MIR SINE MIR 25 80 -182 1097 191 81 84 chr12 111088156 111088501 -32697954 + MER2 DNA MER2_type 1 344 0 430 356 51 23 chr12 111088501 111088658 -32697797 + MIR SINE MIR 80 246 -16 505 206 84 0 chr12 111088847 111088978 -32697477 - L1ME3A LINE L1 -226 5944 5803 811 203 0 0 chr12 111089011 111089154 -32697301 - FLAM_C SINE Alu 0 143 1 186 43 0 0 chr12 111089181 111089204 -32697251 + (TC)n Simple_repeat Simple_repeat 2 24 0 500 238 8 33 chr12 111089204 111089326 -32697129 - FLAM_C SINE Alu -24 119 1 674 179 0 0 chr12 111089374 111089486 -32696969 + MER7A DNA MER2_type 1 110 -236 297 238 213 0 chr12 111089863 111089943 -32696512 - L2 LINE L2 -4 3268 3172 199 186 0 47 chr12 111092650 111092693 -32693762 - MIR SINE MIR -4 258 218 255 351 40 0 chr12 111092722 111092796 -32693659 - MIR SINE MIR -57 151 75 276 260 123 14 chr12 111093058 111093204 -32693251 - MIR SINE MIR -51 211 50 2163 107 7 3 chr12 111093804 111094095 -32692360 - AluSx SINE Alu -20 292 1 760 262 147 0 chr12 111094110 111094335 -32692120 + MIR SINE MIR 5 262 0 295 214 63 92 chr12 111095026 111095156 -32691299 - MIR SINE MIR -77 131 30 263 306 61 61 chr12 111095403 111095700 -32690755 - L2 LINE L2 -923 2391 2095 359 302 195 14 chr12 111095731 111095946 -32690509 - MIR SINE MIR -7 255 2 24 0 0 0 chr12 111096488 111096512 -32689943 + AT_rich Low_complexity Low_complexity 1 24 0 219 313 88 0 chr12 111096773 111096853 -32689602 + L2 LINE L2 3200 3286 -27 2464 75 0 3 chr12 111097447 111097755 -32688700 - AluSg SINE Alu -3 307 1 21 36 0 0 chr12 111098748 111098776 -32687679 + AT_rich Low_complexity Low_complexity 1 28 0 319 141 258 86 chr12 111098976 111099139 -32687316 - L1MC5 LINE L1 -47 7914 7724 245 271 202 54 chr12 111099372 111099630 -32686825 - L2 LINE L2 -2 3311 3016 351 238 36 0 chr12 111101700 111101784 -32684671 + MIR SINE MIR 164 250 -12 382 264 58 17 chr12 111102043 111102217 -32684238 + HAL1 LINE L1 1994 2174 -333 1777 161 3 26 chr12 111102897 111103201 -32683254 + AluJo SINE Alu 1 297 -15 582 230 138 38 chr12 111104330 111104621 -32681834 + L1ME LINE L1 155 474 -5949 1662 219 20 10 chr12 111104625 111105032 -32681423 + L1ME LINE L1 1081 1491 -4932 * 2288 221 138 27 chr12 111105019 111105217 -32681238 + L1ME LINE L1 3029 3203 -3738 2190 106 0 10 chr12 111105217 111105518 -32680937 + AluSc SINE Alu 1 298 -11 2288 221 138 27 chr12 111105518 111105632 -32680823 + L1ME LINE L1 3203 3303 -3638 1180 155 40 0 chr12 111105632 111105832 -32680623 + MER6B DNA MER2_type 2 209 -1 2288 221 138 27 chr12 111105832 111106529 -32679926 + L1ME LINE L1 3303 4152 -2789 548 279 66 12 chr12 111106533 111106791 -32679664 + L1ME LINE L1 4524 4795 -2146 243 0 0 0 chr12 111106792 111106819 -32679636 + (CA)n Simple_repeat Simple_repeat 1 27 0 790 243 98 32 chr12 111106832 111107232 -32679223 + L1ME LINE L1 5655 6080 -861 661 289 18 46 chr12 111107242 111107441 -32679014 + L1ME LINE L1 6198 6401 -556 1849 174 0 0 chr12 111107441 111107722 -32678733 + AluJo SINE Alu 1 281 -31 198 103 0 0 chr12 111107724 111107753 -32678702 + (TAAG)n Simple_repeat Simple_repeat 3 31 0 661 289 18 46 chr12 111107753 111107834 -32678621 + L1ME LINE L1 6402 6473 -484 659 241 85 40 chr12 111108849 111109073 -32677382 + MIR SINE MIR 29 262 0 204 40 0 0 chr12 111109263 111109288 -32677167 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1378 183 0 16 chr12 111109291 111109537 -32676918 - AluJo SINE Alu -24 288 47 547 148 11 0 chr12 111109788 111109876 -32676579 + HY4 scRNA scRNA 1 89 -4 21 0 0 0 chr12 111109878 111109899 -32676556 + AT_rich Low_complexity Low_complexity 1 21 0 450 0 0 0 chr12 111111673 111111723 -32674732 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1523 185 0 54 chr12 111111726 111112024 -32674431 - AluJo SINE Alu -30 282 1 517 240 55 50 chr12 111112044 111112244 -32674211 + MER106A DNA MER1_type 36 236 0 2585 40 0 0 chr12 111112246 111112548 -32673907 + AluY SINE Alu 1 302 -9 22 70 0 0 chr12 111113165 111113208 -32673247 + AT_rich Low_complexity Low_complexity 1 43 0 261 272 58 0 chr12 111113482 111113585 -32672870 - L1ME LINE L1 -305 5865 5757 327 335 218 22 chr12 111113800 111113974 -32672481 - L2 LINE L2 -898 2416 2277 517 183 324 0 chr12 111113974 111114116 -32672339 - MER5A DNA MER1_type -1 188 1 327 335 218 22 chr12 111114116 111114756 -32671699 - L2 LINE L2 -1037 2277 1442 855 215 77 105 chr12 111114805 111115196 -32671259 + L1MEc LINE L1 1688 2067 -4329 5454 30 6 3 chr12 111115330 111115975 -32670480 + L1PA5 LINE L1 5505 6151 -3 22 0 0 0 chr12 111116164 111116186 -32670269 + AT_rich Low_complexity Low_complexity 1 22 0 252 279 45 65 chr12 111116282 111116453 -32670002 + MIR SINE MIR 20 249 -13 781 169 0 0 chr12 111116621 111116745 -32669710 - AluJo SINE Alu -157 155 32 1710 173 0 33 chr12 111117707 111118007 -32668448 - AluJb SINE Alu -22 290 1 1781 43 26 0 chr12 111118143 111118376 -32668079 + L1PA8 LINE L1 5933 6171 -1 1683 152 52 17 chr12 111118545 111118835 -32667620 - AluJo SINE Alu -8 304 5 27 0 0 0 chr12 111119736 111119763 -32666692 + AT_rich Low_complexity Low_complexity 1 27 0 252 250 70 0 chr12 111120507 111120607 -32665848 - L1ME4a LINE L1 -49 6072 5966 811 108 58 0 chr12 111120626 111120765 -32665690 - L1MA8 LINE L1 -6 6285 6139 1325 139 51 0 chr12 111120765 111121002 -32665453 - L1MA8 LINE L1 -44 6247 5999 32 86 0 0 chr12 111121005 111121086 -32665369 + AT_rich Low_complexity Low_complexity 1 81 0 1535 208 14 3 chr12 111121126 111121414 -32665041 + AluJo SINE Alu 7 297 -15 4076 249 146 70 chr12 111121426 111123711 -32662744 - HAL1 LINE L1 -48 2459 2 507 284 62 29 chr12 111123713 111124019 -32662436 - L1ME4a LINE L1 -218 5903 5588 339 105 0 0 chr12 111124324 111124381 -32662074 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chr12 111124545 111124569 -32661886 + AT_rich Low_complexity Low_complexity 1 24 0 683 228 149 19 chr12 111124830 111125045 -32661410 - MIR SINE MIR -3 259 17 33 25 0 0 chr12 111125992 111126032 -32660423 + AT_rich Low_complexity Low_complexity 1 40 0 1768 135 45 107 chr12 111126497 111126964 -32659491 + L1MB7 LINE L1 5582 6019 -165 819 219 0 0 chr12 111126973 111127128 -32659327 - FRAM SINE Alu -21 155 1 799 166 7 0 chr12 111127129 111127268 -32659187 + L1MB7 LINE L1 6026 6165 -19 464 208 0 64 chr12 111127382 111127507 -32658948 + L1MC4 LINE L1 7925 8041 -1 586 342 69 9 chr12 111227932 111228163 -32558292 - MIR SINE MIR -5 257 13 248 264 98 43 chr12 111229562 111229725 -32556730 + L1ME LINE L1 5578 5749 -372 351 303 26 17 chr12 111229896 111230010 -32556445 - L2 LINE L2 -22 3291 3136 312 231 62 57 chr12 111230112 111230259 -32556196 - MER103 DNA DNA 0 166 2 748 197 0 0 chr12 111230506 111230638 -32555817 + FLAM_A SINE Alu 2 133 0 284 153 0 14 chr12 111231653 111231725 -32554730 + (TA)n Simple_repeat Simple_repeat 2 72 0 951 107 0 0 chr12 111231729 111231869 -32554586 - AluY SINE Alu -3 308 169 1616 166 45 42 chr12 111231886 111232175 -32554280 + AluJo SINE Alu 1 290 -22 317 222 42 12 chr12 111232194 111232361 -32554094 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 2365 92 0 0 chr12 111232773 111233068 -32553387 + AluSx SINE Alu 1 295 -17 686 229 169 5 chr12 111233198 111233399 -32553056 - MIR SINE MIR -25 237 4 1088 252 112 3 chr12 111233601 111233887 -32552568 + MLT1J LTR MaLR 1 317 -194 600 184 0 9 chr12 111234134 111234243 -32552212 + L1PB4 LINE L1 6006 6113 -43 256 317 48 60 chr12 111234536 111234703 -32551752 - L2 LINE L2 -107 3165 3001 1349 150 0 30 chr12 111234937 111235043 -32551412 + AluSg/x SINE Alu 81 189 -123 2246 118 59 3 chr12 111235043 111235398 -32551057 - THE1C LTR MaLR 0 375 1 1349 150 0 30 chr12 111235398 111235524 -32550931 + AluSg/x SINE Alu 189 306 -6 843 171 5 45 chr12 111235842 111236041 -32550414 - AluSx SINE Alu -18 292 102 703 254 201 18 chr12 111237088 111237485 -32548970 - L2 LINE L2 -623 2691 2222 231 281 0 0 chr12 111238057 111238139 -32548316 - AluSx SINE Alu -201 102 21 541 282 63 11 chr12 111238158 111238332 -32548123 + MER5A DNA MER1_type 7 189 0 1552 171 39 25 chr12 111239198 111239364 -32547091 - AluJo SINE Alu -27 285 112 1864 122 4 0 chr12 111239364 111239618 -32546837 + AluSp SINE Alu 1 255 -58 1552 171 39 25 chr12 111239618 111239732 -32546723 - AluJo SINE Alu -200 112 1 777 293 107 25 chr12 111240259 111240662 -32545793 + LTR16B LTR ERVL 2 437 -27 4484 91 37 11 chr12 111240679 111241307 -32545148 + LTR9B LTR ERV1 1 644 0 508 227 37 6 chr12 111241318 111241481 -32544974 + L1M4 LINE L1 3178 3345 -2801 1510 185 50 36 chr12 111241481 111241783 -32544672 + AluJo SINE Alu 1 306 -6 1296 225 85 88 chr12 111242582 111243196 -32543259 + LTR9 LTR ERV1 1 612 0 262 313 0 0 chr12 111243390 111243457 -32542998 - L2 LINE L2 -25 3247 3181 2454 76 3 6 chr12 111243567 111243881 -32542574 + AluSp SINE Alu 1 313 0 701 257 48 61 chr12 111243964 111244275 -32542180 - L1ME1 LINE L1 -15 6151 5845 * 2217 214 50 47 chr12 111244273 111244819 -32541636 - L1MEc LINE L1 -3288 3252 2702 2139 74 95 0 chr12 111244819 111245102 -32541353 - AluSp SINE Alu -3 310 1 2217 214 50 47 chr12 111245102 111245236 -32541219 - L1MEc LINE L1 -3838 2702 2570 672 84 0 11 chr12 111245240 111245335 -32541120 - L1MA3 LINE L1 0 6305 6212 1011 140 7 0 chr12 111245338 111245488 -32540967 + AluSp SINE Alu 137 287 -26 534 151 9 38 chr12 111245502 111245608 -32540847 - L1MA3 LINE L1 -73 6232 6130 4208 88 75 40 chr12 111245608 111246549 -32539906 - MER11A LTR ERVK -134 1132 1 342 0 0 0 chr12 111246581 111246619 -32539836 + (TG)n Simple_repeat Simple_repeat 2 39 0 466 247 57 60 chr12 111246646 111247002 -32539453 - L1MEc LINE L1 -4916 1624 1301 1957 151 7 0 chr12 111247002 111247293 -32539162 - AluSx SINE Alu -19 293 1 466 247 57 60 chr12 111247293 111247319 -32539136 - L1MEc LINE L1 -5239 1301 1276 1783 181 3 0 chr12 111247495 111247787 -32538668 - AluJo SINE Alu -19 293 1 364 305 136 50 chr12 111247857 111248159 -32538296 - L2 LINE L2 -2 3270 2943 1486 189 70 20 chr12 111248294 111248596 -32537859 + MER45B DNA AcHobo 2 318 -722 1858 174 96 10 chr12 111248603 111248987 -32537468 + MER45B DNA AcHobo 624 1040 0 222 118 0 0 chr12 111249886 111249920 -32536535 + (CCA)n Simple_repeat Simple_repeat 3 36 0 370 172 16 0 chr12 111249950 111250014 -32536441 + MLT1K LTR MaLR 524 588 0 376 290 26 65 chr12 111250057 111250212 -32536243 - MIR SINE MIR -111 151 3 214 233 41 0 chr12 111250619 111250692 -32535763 + (CTATT)n Simple_repeat Simple_repeat 3 78 0 1432 189 61 18 chr12 111250802 111251082 -32535373 - AluJb SINE Alu -20 292 1 1719 181 41 15 chr12 111251115 111251458 -32534997 - L1MB7 LINE L1 -19 6165 5814 45275 33 1 4 chr12 111251463 111257580 -32528875 - L1PA4 LINE L1 0 6155 55 1567 145 30 30 chr12 111257581 111257877 -32528578 - L1MB7 LINE L1 -360 5824 5529 1333 236 96 37 chr12 111257880 111258308 -32528147 + MLT1J LTR MaLR 59 511 0 7656 42 1 1 chr12 111258371 111259344 -32527111 + L1PA8 LINE L1 5200 6172 0 2174 194 92 58 chr12 111259578 111259876 -32526579 + MER99 DNA DNA 5 291 -537 2131 138 3 0 chr12 111259876 111260181 -32526274 - AluSx SINE Alu -6 306 1 2174 194 92 58 chr12 111260181 111260469 -32525986 + MER99 DNA DNA 291 611 -217 212 319 21 42 chr12 111260510 111260654 -32525801 + L2 LINE L2 3169 3309 -4 653 279 50 0 chr12 111260937 111261156 -32525299 + MIR SINE MIR 20 249 -13 2005 99 0 21 chr12 111261548 111261854 -32524601 + AluSg SINE Alu 33 310 0 1654 257 130 107 chr12 111262080 111262321 -32524134 + L2 LINE L2 1290 1524 -1789 1569 134 51 16 chr12 111262321 111262575 -32523880 - AluSx SINE Alu -11 301 39 1654 257 130 107 chr12 111262575 111262741 -32523714 + L2 LINE L2 1524 1685 -1628 386 169 0 0 chr12 111262741 111262806 -32523649 + MLT1K LTR MaLR 524 588 0 1654 257 130 107 chr12 111262806 111264302 -32522153 + L2 LINE L2 1685 3286 -27 284 359 44 56 chr12 111264421 111264741 -32521714 - L2 LINE L2 -9 3263 2948 205 191 0 21 chr12 111265251 111265298 -32521157 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 2505 67 0 0 chr12 111266141 111266438 -32520017 - AluSg SINE Alu -13 297 1 329 229 114 23 chr12 111266551 111266682 -32519773 + MIR3 SINE MIR 66 208 0 27 92 0 0 chr12 111267229 111267305 -32519150 + GC_rich Low_complexity Low_complexity 1 76 0 27 73 0 0 chr12 111267542 111267597 -32518858 + GC_rich Low_complexity Low_complexity 1 55 0 560 244 35 51 chr12 111267721 111267918 -32518537 + MIR SINE MIR 37 230 -32 380 221 17 125 chr12 111268994 111269180 -32517275 + MIR3 SINE MIR 28 191 -17 603 235 153 0 chr12 111269546 111269716 -32516739 - MIR SINE MIR -30 232 37 1902 141 4 0 chr12 111270637 111270914 -32515541 - AluJo SINE Alu -4 308 31 366 260 135 31 chr12 111271193 111271385 -32515070 + MIR SINE MIR 50 261 -1 571 271 6 33 chr12 111271867 111272048 -32514407 + MIR SINE MIR 58 233 -29 462 250 61 24 chr12 111272260 111272424 -32514031 - MER112 DNA MER1_type 0 260 91 2306 104 0 3 chr12 111273347 111273668 -32512787 + AluSq SINE Alu 1 313 0 1176 154 98 5 chr12 111275023 111275237 -32511218 + MER46A DNA MER2_type 2 235 -1 343 284 32 53 chr12 111275508 111275698 -32510757 - MIR SINE MIR -13 249 64 681 143 9 0 chr12 111276146 111276251 -32510204 + FLAM_C SINE Alu 21 126 -17 1539 148 0 39 chr12 111276282 111276539 -32509916 - AluJo SINE Alu -7 305 59 626 186 47 31 chr12 111278810 111278939 -32507516 - MIR SINE MIR -124 138 8 568 266 52 34 chr12 111279395 111279628 -32506827 + MIR SINE MIR 9 245 -17 671 313 22 5 chr12 111281917 111282141 -32504314 + MIR SINE MIR 6 233 -29 978 216 58 10 chr12 111282985 111283193 -32503262 + MER58A DNA MER1_type 4 221 -3 831 303 12 12 chr12 111283250 111283501 -32502954 + MIR SINE MIR 12 262 0 282 213 33 0 chr12 111283858 111283919 -32502536 - L2 LINE L2 0 3272 3210 1730 184 6 35 chr12 111285291 111285607 -32500848 - AluJb SINE Alu -5 307 1 818 223 173 53 chr12 111286621 111287038 -32499417 - MLT1C LTR MaLR 0 467 1 634 188 16 16 chr12 111287066 111287194 -32499261 - FLAM_C SINE Alu -4 129 2 1984 74 78 32 chr12 111287384 111287668 -32498787 - AluY SINE Alu -14 297 1 380 238 0 0 chr12 111287873 111287953 -32498502 - L2 LINE L2 -2 3311 3232 3095 197 125 22 chr12 111288001 111288779 -32497676 - MER21B LTR ERV1 -1 862 5 429 233 0 22 chr12 111288788 111288878 -32497577 - MER21B LTR ERV1 -773 90 3 2005 110 7 23 chr12 111289222 111289531 -32496924 - AluSp SINE Alu -9 304 1 244 351 39 13 chr12 111290224 111290378 -32496077 + MIR SINE MIR 68 225 -37 205 245 176 10 chr12 111290987 111291089 -32495366 + MIR SINE MIR 132 250 -12 2476 85 3 0 chr12 111291292 111291598 -32494857 - AluY SINE Alu -4 307 1 256 317 48 60 chr12 111292381 111292548 -32493907 - L2 LINE L2 -107 3165 3001 206 299 65 0 chr12 111292677 111292754 -32493701 - L2 LINE L2 -49 3223 3142 2468 65 0 0 chr12 111293178 111293471 -32492984 + AluY SINE Alu 1 293 -18 294 95 24 0 chr12 111297299 111297341 -32489114 - MER75 DNA T2_type 0 504 462 234 0 0 0 chr12 111300373 111300399 -32486056 + (TG)n Simple_repeat Simple_repeat 2 27 0 255 242 0 0 chr12 111301638 111301700 -32484755 + (TA)n Simple_repeat Simple_repeat 2 63 0 2077 127 7 0 chr12 111302201 111302485 -32483970 + AluSx SINE Alu 1 286 -26 423 107 0 0 chr12 111302506 111302581 -32483874 + (CATA)n Simple_repeat Simple_repeat 2 76 0 2434 58 0 49 chr12 111303276 111303602 -32482853 + AluY SINE Alu 1 310 -1 245 296 99 0 chr12 111304608 111304679 -32481776 + MIR SINE MIR 113 190 -72 228 196 0 0 chr12 111306514 111306560 -32479895 + MIR SINE MIR 104 149 -113 2374 77 10 22 chr12 111306642 111306955 -32479500 + AluSp SINE Alu 1 309 -4 363 296 57 31 chr12 111307176 111307297 -32479158 - MIR3 SINE MIR -43 165 38 2196 138 0 0 chr12 111307297 111307609 -32478846 - AluJb SINE Alu 0 312 1 363 296 57 31 chr12 111307609 111307646 -32478809 - MIR3 SINE MIR -170 38 3 316 321 51 7 chr12 111308228 111308365 -32478090 - MIR SINE MIR -118 144 2 2325 115 0 6 chr12 111308661 111308974 -32477481 - AluSx SINE Alu -1 311 1 377 300 28 50 chr12 111309887 111310067 -32476388 + MIR3 SINE MIR 20 195 -13 248 215 122 56 chr12 111310229 111310336 -32476119 - 7SK RNA RNA -72 121 8 198 146 83 21 chr12 111310541 111310589 -32475866 - L2 LINE L2 -8 3305 3255 566 212 152 0 chr12 111310808 111310940 -32475515 - MER3 DNA MER1_type 0 209 58 713 235 7 0 chr12 111311035 111311184 -32475271 - MER33 DNA MER1_type -170 154 5 22 35 0 0 chr12 111312156 111312185 -32474270 + AT_rich Low_complexity Low_complexity 1 29 0 1484 246 165 35 chr12 111312333 111312830 -32473625 + L2 LINE L2 2215 2646 -667 2382 91 0 0 chr12 111312830 111313126 -32473329 - AluSx SINE Alu -16 296 1 1484 246 165 35 chr12 111313126 111313598 -32472857 + L2 LINE L2 2646 3299 -14 481 258 33 40 chr12 111313871 111314022 -32472433 + MIR SINE MIR 3 152 -110 391 218 30 10 chr12 111314117 111314218 -32472237 + MIR SINE MIR 160 262 0 2162 121 0 0 chr12 111314351 111314649 -32471806 + AluSg SINE Alu 1 298 -12 300 246 29 0 chr12 111315378 111315447 -32471008 + L2 LINE L2 3202 3272 0 189 280 160 0 chr12 111315584 111315684 -32470771 + MIR SINE MIR 100 215 -47 197 267 0 0 chr12 111315900 111315945 -32470510 + L2 LINE L2 3213 3257 -15 2094 136 0 10 chr12 111316900 111317201 -32469254 + AluSx SINE Alu 1 298 -14 5899 107 26 9 chr12 111317244 111318184 -32468271 - L1PB3 LINE L1 0 6154 5200 201 74 0 0 chr12 111318250 111318277 -32468178 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1754 186 20 0 chr12 111318281 111318587 -32467868 - AluJb SINE Alu 0 312 1 413 217 45 16 chr12 111318599 111318787 -32467668 - L1MEc LINE L1 -5469 513 451 1624 184 3 32 chr12 111318819 111319128 -32467327 - AluJb SINE Alu -9 303 4 291 146 0 0 chr12 111319495 111319543 -32466912 - L1MEc LINE L1 -5652 418 371 2302 104 0 0 chr12 111319950 111320238 -32466217 - AluSc SINE Alu -21 288 1 23 0 0 0 chr12 111320241 111320264 -32466191 + AT_rich Low_complexity Low_complexity 1 23 0 520 196 13 19 chr12 111320292 111320450 -32466005 + CT-rich Low_complexity Low_complexity 1 157 0 1749 186 10 7 chr12 111320453 111320760 -32465695 - AluJo SINE Alu -4 308 1 664 201 33 152 chr12 111320760 111321004 -32465451 - MER58A DNA MER1_type -8 216 2 237 311 115 0 chr12 111321268 111321390 -32465065 - L2 LINE L2 -1 3312 3177 273 119 0 0 chr12 111321444 111321486 -32464969 + (TA)n Simple_repeat Simple_repeat 2 43 0 3132 148 26 5 chr12 111321499 111321611 -32464844 - L1M3 LINE L1 -403 5768 5660 2166 136 0 0 chr12 111321611 111321912 -32464543 - AluSq SINE Alu -12 301 1 3132 148 26 5 chr12 111321912 111322442 -32464013 - L1M3 LINE L1 -511 5660 5116 233 220 0 0 chr12 111322941 111323000 -32463455 + A-rich Low_complexity Low_complexity 2 60 0 2887 10 0 0 chr12 111323050 111323359 -32463096 + AluY SINE Alu 1 309 -2 1311 178 23 8 chr12 111323480 111323921 -32462534 + MLT1D LTR MaLR 1 505 0 1063 85 0 0 chr12 111324044 111324173 -32462282 + AluSq/x SINE Alu 1 129 -184 3812 106 2 12 chr12 111324592 111325151 -32461304 - L1PA14 LINE L1 0 6161 5609 378 88 0 0 chr12 111325664 111325721 -32460734 - AluSx SINE Alu -3 297 241 1435 140 0 0 chr12 111325721 111325921 -32460534 - AluSx SINE Alu -106 206 7 929 228 26 34 chr12 111325999 111326232 -32460223 - MIR SINE MIR -30 232 2 231 255 0 0 chr12 111326535 111326582 -32459873 + L2 LINE L2 3252 3298 -15 230 284 120 7 chr12 111326921 111327083 -32459372 - L1MC/D LINE L1 -439 5803 5662 22 56 0 0 chr12 111328129 111328165 -32458290 + GC_rich Low_complexity Low_complexity 1 36 0 1614 62 20 0 chr12 111328900 111329095 -32457360 + AluSg/x SINE Alu 65 263 -47 1067 141 241 28 chr12 111329628 111329877 -32456578 - AluJb SINE Alu 0 302 1 21 36 0 0 chr12 111331251 111331279 -32455176 + AT_rich Low_complexity Low_complexity 1 28 0 348 193 219 17 chr12 111331559 111331678 -32454777 - L1ME2 LINE L1 -9 6155 6013 182 235 59 20 chr12 111331782 111331833 -32454622 - MIR SINE MIR 0 262 210 3079 167 37 52 chr12 111331849 111332580 -32453875 - L1MB8 LINE L1 0 6178 5459 538 211 18 0 chr12 111332680 111332789 -32453666 - FLAM_C SINE Alu -32 111 1 1596 161 51 17 chr12 111333179 111333471 -32452984 + AluJb SINE Alu 1 302 -10 34 42 0 0 chr12 111333906 111333954 -32452501 + AT_rich Low_complexity Low_complexity 1 48 0 1649 125 70 42 chr12 111333975 111334262 -32452193 - AluJb SINE Alu -17 295 1 450 259 19 23 chr12 111334319 111334494 -32451961 - L1MDa LINE L1 -4549 1991 1871 225 0 0 0 chr12 111334680 111334705 -32451750 + (A)n Simple_repeat Simple_repeat 1 25 0 2547 38 3 0 chr12 111334876 111335169 -32451286 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 111335244 111335290 -32451165 + AT_rich Low_complexity Low_complexity 1 46 0 528 68 14 0 chr12 111335801 111335875 -32450580 + MADE1 DNA Mariner 1 75 -5 2007 101 0 60 chr12 111335875 111336193 -32450262 - AluSx SINE Alu -13 299 1 342 289 134 94 chr12 111336421 111336930 -32449525 - L1M2 LINE L1 -5489 1360 832 207 0 0 0 chr12 111336986 111337009 -32449446 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2728 177 34 19 chr12 111338411 111339026 -32447429 + L1ME1 LINE L1 5527 6150 -16 2186 132 0 0 chr12 111339033 111339328 -32447127 - AluSx SINE Alu -17 295 1 440 216 14 108 chr12 111340003 111340032 -32446423 - MIR SINE MIR -49 213 183 1866 163 49 0 chr12 111340032 111340358 -32446097 + MER2 DNA MER2_type 3 344 0 440 216 14 108 chr12 111340358 111340401 -32446054 - MIR SINE MIR -79 183 138 1505 145 0 0 chr12 111340401 111340635 -32445820 + MER46A DNA MER2_type 2 235 -1 440 216 14 108 chr12 111340635 111340709 -32445746 - MIR SINE MIR -124 138 80 223 333 15 0 chr12 111340715 111340781 -32445674 - L2 LINE L2 -66 3206 3140 533 293 141 23 chr12 111340844 111341284 -32445171 + L1ME3A LINE L1 5350 5842 -328 41 21 0 0 chr12 111341535 111341583 -32444872 + AT_rich Low_complexity Low_complexity 1 48 0 386 318 162 28 chr12 111342328 111342592 -32443863 + L2 LINE L2 2905 3221 -51 393 279 120 82 chr12 111342592 111342760 -32443695 - MER102a DNA MER1_type -1088 329 169 1881 96 0 8 chr12 111342760 111343010 -32443445 - AluSx SINE Alu -9 303 56 393 279 120 82 chr12 111343010 111343157 -32443298 - MER102a DNA MER1_type -1248 169 2 386 318 162 28 chr12 111343157 111343213 -32443242 + L2 LINE L2 3221 3268 -4 24 0 0 0 chr12 111343483 111343507 -32442948 + AT_rich Low_complexity Low_complexity 1 24 0 2157 121 0 25 chr12 111343663 111343978 -32442477 + AluSx SINE Alu 1 307 -5 475 321 42 46 chr12 111344210 111344472 -32441983 + MIR SINE MIR 2 262 0 677 207 13 13 chr12 111344510 111344660 -32441795 - MIR SINE MIR 0 262 113 534 284 113 5 chr12 111344686 111344906 -32441549 + MIR SINE MIR 19 262 0 620 276 63 11 chr12 111344983 111345157 -32441298 - MER5A DNA MER1_type 0 189 7 2049 122 0 11 chr12 111345176 111345463 -32440992 + AluSx SINE Alu 21 304 -8 2358 78 0 0 chr12 111345658 111345939 -32440516 - AluSp SINE Alu -32 281 1 2509 87 0 0 chr12 111346754 111347066 -32439389 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 111347069 111347092 -32439363 + AT_rich Low_complexity Low_complexity 1 23 0 584 180 7 20 chr12 111347130 111347280 -32439175 + CT-rich Low_complexity Low_complexity 1 148 0 1777 186 10 7 chr12 111347283 111347590 -32438865 - AluJo SINE Alu -4 308 1 580 205 33 152 chr12 111347590 111347834 -32438621 - MER58A DNA MER1_type -8 216 2 285 311 115 0 chr12 111348098 111348220 -32438235 - L2 LINE L2 -1 3312 3177 369 62 0 0 chr12 111348272 111348320 -32438135 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2919 149 26 5 chr12 111348333 111348445 -32438010 - L1M3 LINE L1 -403 5768 5660 2164 136 0 0 chr12 111348445 111348746 -32437709 - AluSq SINE Alu -12 301 1 2919 149 26 5 chr12 111348746 111349276 -32437179 - L1M3 LINE L1 -511 5660 5116 233 220 0 0 chr12 111349775 111349834 -32436621 + A-rich Low_complexity Low_complexity 2 60 0 2808 10 0 0 chr12 111349884 111350192 -32436263 + AluY SINE Alu 1 308 -3 1220 183 23 8 chr12 111350313 111350754 -32435701 + MLT1D LTR MaLR 1 505 0 1047 85 0 0 chr12 111350877 111351006 -32435449 + AluSq/x SINE Alu 1 129 -183 3428 117 2 19 chr12 111351425 111351988 -32434467 - L1PA14 LINE L1 0 6161 5609 1674 127 138 0 chr12 111352501 111352761 -32433694 - AluSx SINE Alu -4 298 3 1014 228 26 34 chr12 111352835 111353068 -32433387 - MIR SINE MIR -30 232 2 241 255 0 0 chr12 111353371 111353418 -32433037 + L2 LINE L2 3252 3298 -15 327 295 124 7 chr12 111353746 111353919 -32432536 - L1MC4a LINE L1 -439 5803 5662 389 281 142 80 chr12 111354344 111355035 -32431420 - L1M2 LINE L1 -5851 998 295 1593 70 20 0 chr12 111355730 111355929 -32430526 + AluSq SINE Alu 64 266 -47 183 275 174 14 chr12 111356152 111356221 -32430234 - L2 LINE L2 -4 3268 3189 997 148 236 28 chr12 111356461 111356711 -32429744 - AluJb SINE Alu 0 302 1 21 36 0 0 chr12 111358085 111358113 -32428342 + AT_rich Low_complexity Low_complexity 1 28 0 305 193 219 17 chr12 111358393 111358512 -32427943 - L1ME2 LINE L1 -9 6155 6013 182 235 59 20 chr12 111358616 111358667 -32427788 - MIR SINE MIR 0 262 210 3600 164 42 45 chr12 111358683 111359586 -32426869 - L1MB8 LINE L1 0 6178 5279 694 238 90 26 chr12 111359586 111359775 -32426680 - MIR SINE MIR -60 202 2 212 256 39 39 chr12 111359786 111359864 -32426591 - L3b LINE CR1 -318 1265 1188 398 245 255 33 chr12 111361365 111361577 -32424878 - MIR SINE MIR -2 260 2 24 32 0 0 chr12 111361960 111361991 -32424464 + AT_rich Low_complexity Low_complexity 1 31 0 732 222 93 16 chr12 111363294 111363542 -32422913 + L1MA9 LINE L1 6008 6274 -38 402 281 138 6 chr12 111363609 111363776 -32422679 - LTR50 LTR ERVL -133 662 474 315 257 37 28 chr12 111363830 111363939 -32422516 - L1M4 LINE L1 -3655 2491 2382 281 283 48 32 chr12 111364014 111364201 -32422254 - L1M4 LINE L1 -3786 2360 2171 518 248 0 8 chr12 111364448 111364565 -32421890 - L2 LINE L2 -7 3306 3191 208 302 10 62 chr12 111364879 111364975 -32421480 - L2 LINE L2 -1 3271 3181 23 0 0 0 chr12 111365804 111365827 -32420628 + AT_rich Low_complexity Low_complexity 1 23 0 431 302 43 0 chr12 111365903 111366042 -32420413 - LTR50 LTR ERVL -170 625 481 1088 31 8 0 chr12 111366759 111366888 -32419567 + BC200 scRNA scRNA 1 130 -70 188 0 74 0 chr12 111366888 111366915 -32419540 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 228 150 333 0 chr12 111367119 111367179 -32419276 - MADE1 DNA Mariner 0 80 1 219 36 0 0 chr12 111367516 111367544 -32418911 + (TG)n Simple_repeat Simple_repeat 2 29 0 2369 96 0 0 chr12 111368315 111368616 -32417839 - AluSc SINE Alu -8 301 1 26 30 0 0 chr12 111368859 111368892 -32417563 + AT_rich Low_complexity Low_complexity 1 33 0 6308 128 85 27 chr12 111369325 111369843 -32416612 + Tigger1 DNA MER2_type 2 489 -1929 2003 115 7 0 chr12 111369843 111370122 -32416333 + AluSx SINE Alu 1 281 -31 6308 128 85 27 chr12 111370122 111370770 -32415685 + Tigger1 DNA MER2_type 489 1235 -1183 920 131 85 0 chr12 111370753 111370929 -32415526 + Tigger1 DNA MER2_type 2119 2309 -109 * 1964 94 4 0 chr12 111370929 111371183 -32415272 - AluSp SINE Alu -12 301 47 2363 101 0 0 chr12 111371283 111371589 -32414866 - AluSg SINE Alu -4 306 1 1074 186 25 5 chr12 111371663 111371867 -32414588 - MER3 DNA MER1_type -1 208 1 1162 124 0 32 chr12 111371987 111372204 -32414251 + Tigger2 DNA MER2_type 1 210 -2508 738 171 55 0 chr12 111372203 111372349 -32414106 + Tigger2 DNA MER2_type 2564 2717 -1 * 347 248 73 24 chr12 111374495 111374701 -32411754 - HAL1 LINE L1 0 2507 2292 * 422 139 35 12 chr12 111374694 111374780 -32411675 - L1MC5 LINE L1 -50 7911 7824 361 296 11 67 chr12 111374810 111374989 -32411466 + L3 LINE CR1 576 744 -833 302 129 138 0 chr12 111375000 111375066 -32411389 + MERVL LTR ERVL 5098 5162 -323 249 320 32 64 chr12 111375098 111375317 -32411138 + L3 LINE CR1 804 1015 -562 942 130 214 10 chr12 111375343 111375535 -32410920 + MER46A DNA MER2_type 1 231 -5 2079 118 6 46 chr12 111375579 111375756 -32410699 - AluSx SINE Alu -2 310 150 2326 82 0 0 chr12 111375756 111376049 -32410406 - AluSg SINE Alu -12 298 6 2079 118 6 46 chr12 111376049 111376194 -32410261 - AluSx SINE Alu -162 150 1 653 88 9 26 chr12 111376208 111376321 -32410134 - L1PA13 LINE L1 0 6163 6053 593 290 86 52 chr12 111376339 111376629 -32409826 + L3 LINE CR1 1051 1350 -227 393 254 105 41 chr12 111376636 111376751 -32409704 - MIR SINE MIR 0 262 156 619 257 133 0 chr12 111376751 111376977 -32409478 - MIR SINE MIR -2 260 5 393 254 105 41 chr12 111376977 111377102 -32409353 - MIR SINE MIR -106 156 17 255 367 100 7 chr12 111377118 111377268 -32409187 + L3 LINE CR1 1412 1575 -2 2620 20 0 0 chr12 111377863 111378197 -32408258 - AluYb8 SINE Alu 0 318 1 2272 104 0 10 chr12 111378975 111379283 -32407172 - AluSx SINE Alu -7 305 1 526 258 145 0 chr12 111379472 111379599 -32406856 + MIR SINE MIR 49 213 -49 396 0 0 0 chr12 111379599 111379643 -32406812 + (TG)n Simple_repeat Simple_repeat 2 45 0 526 258 145 0 chr12 111379643 111379701 -32406754 + MIR SINE MIR 213 261 -1 1012 295 75 35 chr12 111379701 111380440 -32406015 + L2 LINE L2 2543 3313 0 1280 282 187 35 chr12 111380875 111382857 -32403598 - L1MEd LINE L1 -3127 3002 568 22 56 0 0 chr12 111385013 111385049 -32401406 + AT_rich Low_complexity Low_complexity 1 36 0 546 278 79 48 chr12 111386032 111386220 -32400235 - L1ME LINE L1 -406 5756 5575 354 98 0 0 chr12 111386220 111386271 -32400184 + (TA)n Simple_repeat Simple_repeat 1 51 0 546 278 79 48 chr12 111386271 111386699 -32399756 - L1ME LINE L1 -587 5575 5113 2077 75 43 3 chr12 111386699 111386981 -32399474 - AluSg SINE Alu -15 295 3 546 278 79 48 chr12 111386981 111387073 -32399382 - L1ME LINE L1 -1049 5113 5025 21 0 0 0 chr12 111391926 111391947 -32394508 + AT_rich Low_complexity Low_complexity 1 21 0 254 299 158 0 chr12 111392375 111392502 -32393953 - L2 LINE L2 0 3313 3167 267 333 184 34 chr12 111392688 111392895 -32393560 + MIR SINE MIR 14 251 -11 24 0 0 0 chr12 111393349 111393373 -32393082 + AT_rich Low_complexity Low_complexity 1 24 0 1025 173 43 35 chr12 111393493 111393724 -32392731 - MER46A DNA MER2_type -3 233 1 2390 77 3 0 chr12 111394442 111394742 -32391713 + AluSp SINE Alu 6 306 -7 294 271 188 0 chr12 111395167 111395263 -32391192 - L2 LINE L2 -4 3268 3155 254 235 0 99 chr12 111395831 111395912 -32390543 + L2 LINE L2 3155 3227 -86 24 96 0 0 chr12 111396354 111396427 -32390028 + AT_rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr12 111396757 111396779 -32389676 + AT_rich Low_complexity Low_complexity 1 22 0 457 272 95 26 chr12 111397059 111397291 -32389164 - L1ME LINE L1 -336 5785 5538 1825 158 3 23 chr12 111397322 111397503 -32388952 + AluSx SINE Alu 5 179 -133 2257 114 50 6 chr12 111397503 111397862 -32388593 - THE1C LTR MaLR 0 375 1 1825 158 3 23 chr12 111397862 111397990 -32388465 + AluSx SINE Alu 179 308 -4 2190 110 0 0 chr12 111398304 111398596 -32387859 - AluSg SINE Alu -18 292 1 208 267 0 0 chr12 111399551 111399596 -32386859 - L2 LINE L2 -15 3257 3213 236 280 160 0 chr12 111399812 111399912 -32386543 - MIR SINE MIR -47 215 100 333 246 29 0 chr12 111400049 111400118 -32386337 - L2 LINE L2 0 3272 3202 2098 121 0 0 chr12 111400847 111401145 -32385310 - AluSg SINE Alu -12 298 1 442 218 30 10 chr12 111401278 111401379 -32385076 - MIR SINE MIR 0 262 160 529 258 33 40 chr12 111401474 111401625 -32384830 - MIR SINE MIR -110 152 3 1722 246 165 35 chr12 111401894 111402366 -32384089 - L2 LINE L2 -14 3299 2890 2310 91 0 0 chr12 111402366 111402662 -32383793 + AluSx SINE Alu 1 296 -16 1722 246 165 35 chr12 111402662 111403159 -32383296 - L2 LINE L2 -423 2890 2215 22 35 0 0 chr12 111403307 111403336 -32383119 + AT_rich Low_complexity Low_complexity 1 29 0 696 235 7 0 chr12 111404308 111404457 -32381998 + MER33 DNA MER1_type 5 154 -170 566 204 152 0 chr12 111404552 111404684 -32381771 + MER3 DNA MER1_type 58 209 0 1981 250 153 26 chr12 111404789 111405761 -32380694 + L1MC4 LINE L1 6947 8042 0 278 346 45 28 chr12 111406373 111406552 -32379903 - L2 LINE L2 -2877 437 256 1711 146 20 33 chr12 111407155 111407456 -32378999 - AluJo SINE Alu -15 297 1 248 141 234 0 chr12 111408659 111408723 -32377732 - MER3 DNA MER1_type 0 209 131 562 168 26 44 chr12 111408761 111408874 -32377581 - MER3 DNA MER1_type -69 140 30 277 290 210 0 chr12 111408892 111408992 -32377463 + L2 LINE L2 3150 3270 -2 332 289 47 34 chr12 111409115 111409264 -32377191 + MIR SINE MIR 1 151 -111 26 0 0 0 chr12 111409590 111409616 -32376839 + AT_rich Low_complexity Low_complexity 1 26 0 2284 71 22 22 chr12 111409751 111410062 -32376393 - AluY SINE Alu 0 311 1 1793 155 0 27 chr12 111410306 111410602 -32375853 - AluJo SINE Alu -12 300 13 23 54 0 0 chr12 111412420 111412457 -32373998 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr12 111412539 111412574 -32373881 + AT_rich Low_complexity Low_complexity 1 35 0 35 63 0 0 chr12 111413154 111413217 -32373238 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr12 111415214 111415246 -32371209 + AT_rich Low_complexity Low_complexity 1 32 0 2705 182 84 10 chr12 111416302 111416954 -32369501 + Tigger7 DNA MER2_type 1 2585 -2 555 194 189 33 chr12 111417909 111418089 -32368366 + MIR SINE MIR 5 212 -50 21 0 0 0 chr12 111418557 111418578 -32367877 + AT_rich Low_complexity Low_complexity 1 21 0 582 272 194 15 chr12 111418855 111419349 -32367106 - L1MB8 LINE L1 -312 5866 5257 310 242 242 21 chr12 111421578 111421673 -32364782 + MER58A DNA MER1_type 1 116 0 2184 99 0 0 chr12 111421710 111421992 -32364463 - AluSx SINE Alu -30 282 1 281 247 215 11 chr12 111421992 111422085 -32364370 + MER58A DNA MER1_type 113 224 0 232 212 0 91 chr12 111422156 111422177 -32364278 + L2 LINE L2 3137 3158 -114 528 176 314 0 chr12 111422177 111422336 -32364119 - MER3 DNA MER1_type 0 209 1 232 212 0 91 chr12 111422336 111422380 -32364075 + L2 LINE L2 3158 3196 -76 244 262 0 48 chr12 111422447 111422531 -32363924 - MER5A DNA MER1_type -106 83 4 1983 127 10 0 chr12 111424610 111424901 -32361554 - AluSx SINE Alu -18 294 1 952 113 192 31 chr12 111425124 111425353 -32361102 + L1MB7 LINE L1 5910 6175 -9 31272 106 16 57 chr12 111425797 111428845 -32357610 - L1PA7 LINE L1 -1 6153 3522 2134 102 0 14 chr12 111428845 111429139 -32357316 - AluSq SINE Alu -23 290 1 31272 106 16 57 chr12 111429139 111432515 -32353940 - L1PA7 LINE L1 -2632 3522 9 3440 171 86 37 chr12 111432637 111432963 -32353492 - L1MB5 LINE L1 -59 6115 5807 1046 125 180 15 chr12 111432963 111433163 -32353292 - MER46A DNA MER2_type 0 236 4 3440 171 86 37 chr12 111433163 111433416 -32353039 - L1MB5 LINE L1 -367 5807 5568 477 14 0 106 chr12 111433416 111433558 -32352897 + (TA)n Simple_repeat Simple_repeat 2 128 0 3440 171 86 37 chr12 111433558 111433855 -32352600 - L1MB5 LINE L1 -606 5568 5191 783 256 21 56 chr12 111434111 111434345 -32352110 - MIR SINE MIR -6 256 31 876 184 176 8 chr12 111434345 111434600 -32351855 - Charlie5 DNA MER1_type 0 2624 26 2011 127 3 38 chr12 111435825 111436140 -32350315 - AluSx SINE Alu -8 304 1 184 171 24 0 chr12 111437277 111437318 -32349137 + L2 LINE L2 3267 3308 -5 321 304 41 35 chr12 111437981 111438152 -32348303 - MIR3 SINE MIR -4 204 33 452 273 139 10 chr12 111438487 111438696 -32347759 + L2 LINE L2 1902 2137 -1177 194 273 0 18 chr12 111438874 111438929 -32347526 - L2 LINE L2 -38 3234 3181 2306 74 7 0 chr12 111439039 111439324 -32347131 + AluSp SINE Alu 1 287 -26 492 152 19 38 chr12 111439338 111439443 -32347012 - L1MA3 LINE L1 -73 6232 6130 4177 92 74 39 chr12 111439443 111440384 -32346071 - MER11A LTR ERVK -134 1132 1 183 80 0 0 chr12 111440416 111440441 -32346014 + (TG)n Simple_repeat Simple_repeat 1 25 0 200 308 17 52 chr12 111440442 111440614 -32345841 + C-rich Low_complexity Low_complexity 3 168 0 587 277 205 26 chr12 111441368 111441953 -32344502 - L2 LINE L2 -398 2916 2227 940 70 0 0 chr12 111492242 111492356 -32294099 + HERVK11 LTR ERVK 3505 3618 -4335 3759 113 6 6 chr12 111492356 111492867 -32293588 - MER9 LTR ERVK 0 511 1 34908 80 16 21 chr12 111492867 111497693 -32288762 - HERVK9 LTR ERVK 0 5916 1113 4806 49 2 0 chr12 111497694 111498261 -32288194 - HERVK9 LTR ERVK -5348 568 1 3832 94 26 8 chr12 111498261 111498763 -32287692 - MER9 LTR ERVK 0 511 1 25341 67 5 2 chr12 111498765 111501911 -32284544 + HERVK11 LTR ERVK 3615 6767 -1186 8547 50 0 0 chr12 111501896 111502893 -32283562 + HERVK11 LTR ERVK 6957 7953 0 * 7344 118 15 19 chr12 111502893 111503968 -32282487 + MER11C LTR ERVK 1 1071 0 359 331 25 38 chr12 111504036 111504193 -32282262 + MER5A DNA MER1_type 35 189 0 318 373 104 26 chr12 111504918 111505301 -32281154 - L2 LINE L2 -30 3242 2830 411 345 58 61 chr12 111505448 111505776 -32280679 + L2 LINE L2 2944 3270 -2 2065 142 0 10 chr12 111506331 111506633 -32279822 + AluSx SINE Alu 3 301 -11 3789 116 114 76 chr12 111506822 111507075 -32279380 + MER4D LTR ERV1 15 257 -615 1916 155 16 3 chr12 111507075 111507378 -32279077 + AluSx SINE Alu 1 307 -5 3789 116 114 76 chr12 111507378 111507528 -32278927 + MER4D LTR ERV1 257 400 -472 2329 89 10 16 chr12 111507528 111507832 -32278623 - AluSx SINE Alu -10 302 1 3789 116 114 76 chr12 111507832 111508254 -32278201 + MER4D LTR ERV1 400 872 0 340 282 82 51 chr12 111508790 111509004 -32277451 - MIR SINE MIR 0 262 33 2099 173 37 31 chr12 111509101 111509647 -32276808 - MLT2A2 LTR ERVL 0 554 1 224 330 11 33 chr12 111509823 111509914 -32276541 + MIR3 SINE MIR 111 199 -9 1949 167 0 0 chr12 111510002 111510307 -32276148 + AluJb SINE Alu 1 305 -7 678 215 73 20 chr12 111511131 111511463 -32274992 - LTR52 LTR ERVL -5 416 20 2319 100 0 3 chr12 111511463 111511763 -32274692 + AluSx SINE Alu 1 299 -13 678 215 73 20 chr12 111511763 111511781 -32274674 - LTR52 LTR ERVL -401 20 4 22 35 0 0 chr12 111512852 111512881 -32273574 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 111513093 111513114 -32273341 + AT_rich Low_complexity Low_complexity 1 21 0 266 194 171 47 chr12 111514292 111514421 -32272034 - L1ME4a LINE L1 -11 6110 5966 21 0 0 0 chr12 111514486 111514507 -32271948 + AT_rich Low_complexity Low_complexity 1 21 0 1713 236 93 37 chr12 111514941 111515480 -32270975 - MLT1K LTR MaLR -7 581 13 277 242 219 16 chr12 111516039 111516167 -32270288 + MIR SINE MIR 7 160 -102 335 335 60 18 chr12 111516203 111516370 -32270085 - MIR SINE MIR 0 262 89 2175 121 13 0 chr12 111517034 111517339 -32269116 - AluSg SINE Alu -1 309 1 24 32 0 0 chr12 111518077 111518108 -32268347 + AT_rich Low_complexity Low_complexity 1 31 0 207 69 0 0 chr12 111518311 111518340 -32268115 + (T)n Simple_repeat Simple_repeat 1 29 0 266 226 200 37 chr12 111518757 111518947 -32267508 + L2 LINE L2 3054 3274 -39 908 92 17 0 chr12 111518956 111519075 -32267380 - L1PB4 LINE L1 -15 6141 6021 1954 229 34 21 chr12 111519143 111519615 -32266840 - MER90 LTR ERV1 -67 547 70 1984 133 18 0 chr12 111520034 111520336 -32266119 - AluSg SINE Alu 0 307 1 227 313 0 0 chr12 111520472 111520536 -32265919 + L2 LINE L2 3242 3305 -8 411 314 0 8 chr12 111520747 111520865 -32265590 - MIR SINE MIR -113 149 33 305 281 65 114 chr12 111521352 111521754 -32264701 - L1M2 LINE L1 -5759 1090 709 297 0 0 0 chr12 111522369 111522402 -32264053 + (CA)n Simple_repeat Simple_repeat 2 34 0 2160 119 3 22 chr12 111523225 111523543 -32262912 + AluSq SINE Alu 1 312 -1 22 35 0 0 chr12 111524530 111524559 -32261896 + AT_rich Low_complexity Low_complexity 1 29 0 180 167 0 0 chr12 111525195 111525225 -32261230 - L2 LINE L2 -216 3056 3027 266 250 96 58 chr12 111526334 111526438 -32260017 + L2 LINE L2 3169 3276 -37 324 222 78 131 chr12 111526504 111526657 -32259798 + L2 LINE L2 3169 3313 0 200 359 16 0 chr12 111526900 111526964 -32259491 - L2 LINE L2 -376 2938 2874 741 289 71 16 chr12 111527029 111527284 -32259171 + MIR SINE MIR 3 260 -2 2498 125 97 20 chr12 111528055 111528456 -32257999 + MSTB1 LTR MaLR 1 432 0 2166 110 3 7 chr12 111528492 111528791 -32257664 + AluSx SINE Alu 1 298 -14 2250 97 17 0 chr12 111529887 111530186 -32256269 - AluSx SINE Alu -8 304 1 372 265 123 59 chr12 111530404 111530574 -32255881 - MIR3 SINE MIR -6 202 22 22 0 0 0 chr12 111531565 111531587 -32254868 + AT_rich Low_complexity Low_complexity 1 22 0 337 354 15 15 chr12 111533301 111533431 -32253024 - L3 LINE CR1 -49 1528 1399 * 495 211 135 19 chr12 111533422 111533578 -32252877 + MIR SINE MIR 30 203 -59 217 225 233 83 chr12 111534168 111534288 -32252167 + MIR3 SINE MIR 40 177 -31 2240 76 0 0 chr12 111534497 111534774 -32251681 - L1PA8 LINE L1 -2 6170 5894 509 291 14 0 chr12 111535614 111535762 -32250693 - MIR SINE MIR 0 262 113 186 43 0 0 chr12 111535922 111535945 -32250510 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 315 172 31 148 chr12 111536204 111536332 -32250123 - MLT1F LTR MaLR -13 529 417 334 267 50 25 chr12 111536486 111536606 -32249849 - MLT1I LTR MaLR -267 142 20 1040 243 9 0 chr12 111536658 111536876 -32249579 + MER58A DNA MER1_type 2 221 -3 518 242 0 39 chr12 111537123 111537276 -32249179 - LTR67 LTR ERVL 0 557 411 237 343 90 8 chr12 111537635 111537769 -32248686 - MIR3 SINE MIR -43 165 21 535 278 71 71 chr12 111538531 111538909 -32247546 - MLT1K LTR MaLR -51 537 160 420 297 53 39 chr12 111539014 111539382 -32247073 + L2 LINE L2 2697 3069 -203 3731 106 14 43 chr12 111539531 111539579 -32246876 - LTR24B LTR ERV1 -7 569 521 1588 146 25 103 chr12 111539579 111539900 -32246555 - AluJo SINE Alu -16 296 1 3731 106 14 43 chr12 111539900 111540437 -32246018 - LTR24B LTR ERV1 -55 521 1 23 33 0 0 chr12 111540852 111540882 -32245573 + AT_rich Low_complexity Low_complexity 1 30 0 251 264 58 11 chr12 111541179 111541266 -32245189 + MIR SINE MIR 29 119 -143 206 231 77 0 chr12 111541295 111541347 -32245108 + MIR SINE MIR 21 76 -186 228 253 209 33 chr12 111541379 111541470 -32244985 + MIR SINE MIR 21 127 -135 545 209 6 23 chr12 111541475 111541647 -32244808 + CT-rich Low_complexity Low_complexity 4 172 0 1673 175 33 3 chr12 111541670 111541973 -32244482 - AluJo SINE Alu 0 312 1 277 283 80 0 chr12 111541974 111542015 -32244440 + MIR SINE MIR 119 155 -107 850 190 113 63 chr12 111542015 111542236 -32244219 + MER8 DNA MER2_type 4 235 -4 277 283 80 0 chr12 111542236 111542307 -32244148 + MIR SINE MIR 155 240 -22 285 200 0 40 chr12 111542483 111542583 -32243872 + C-rich Low_complexity Low_complexity 1 96 0 382 324 17 23 chr12 111542595 111542771 -32243684 + CT-rich Low_complexity Low_complexity 3 177 0 270 0 0 0 chr12 111544201 111544231 -32242224 + (TG)n Simple_repeat Simple_repeat 1 30 0 296 77 19 0 chr12 111544231 111544283 -32242172 + (GA)n Simple_repeat Simple_repeat 2 54 0 1592 192 0 14 chr12 111544285 111544571 -32241884 - AluJb SINE Alu -30 282 1 1522 206 3 28 chr12 111544657 111544977 -32241478 + AluJb SINE Alu 1 312 0 2172 135 0 0 chr12 111545913 111546217 -32240238 + AluSx SINE Alu 1 304 -8 2268 89 0 16 chr12 111547490 111547793 -32238662 + AluY SINE Alu 5 302 -9 1346 252 111 17 chr12 111547970 111548430 -32238025 + MLT1D LTR MaLR 3 505 0 2447 214 74 56 chr12 111548674 111549089 -32237366 - MER21B LTR ERV1 -112 751 345 2442 111 31 0 chr12 111549089 111549442 -32237013 + THE1B LTR MaLR 1 364 0 2447 214 74 56 chr12 111549442 111549468 -32236987 - MER21B LTR ERV1 -518 345 321 1831 148 33 103 chr12 111549468 111549894 -32236561 + MSTD LTR MaLR 1 396 0 2447 214 74 56 chr12 111549894 111550171 -32236284 - MER21B LTR ERV1 -542 321 19 189 74 0 0 chr12 111551206 111551233 -32235222 + (CA)n Simple_repeat Simple_repeat 1 27 0 2374 75 3 7 chr12 111551808 111552114 -32234341 + AluYa5 SINE Alu 1 305 -6 288 51 0 0 chr12 111552127 111552166 -32234289 + Alu SINE Alu 37 75 -233 253 296 45 29 chr12 111552407 111552715 -32233740 + L1 LINE L1 3070 3382 -2764 480 235 16 65 chr12 111552735 111552749 -32233706 - MLT1I LTR MaLR -18 428 415 978 144 0 0 chr12 111552749 111552929 -32233526 + (CTATG)n Simple_repeat Simple_repeat 1 180 0 480 235 16 65 chr12 111552929 111553099 -32233356 - MLT1I LTR MaLR -31 415 232 1904 152 0 0 chr12 111553161 111553437 -32233018 - AluSx SINE Alu -36 276 1 599 282 76 65 chr12 111553490 111553873 -32232582 + LTR16B LTR ERVL 28 414 -50 337 255 90 10 chr12 111553898 111553998 -32232457 - MLT1I LTR MaLR -255 154 61 2278 142 51 40 chr12 111554052 111554344 -32232111 - MER65A LTR ERV1 -6 439 139 2381 97 0 0 chr12 111554344 111554644 -32231811 + AluSp SINE Alu 1 300 -13 2278 142 51 40 chr12 111554644 111554781 -32231674 - MER65A LTR ERV1 -306 139 5 293 309 149 40 chr12 111554801 111555023 -32231432 + MLT1L LTR MaLR 29 304 -311 2204 103 3 13 chr12 111555023 111555325 -32231130 + AluSq SINE Alu 6 304 -9 293 309 149 40 chr12 111555325 111555452 -32231003 + MLT1L LTR MaLR 304 416 -199 233 250 0 0 chr12 111555849 111555905 -32230550 - MIR SINE MIR -7 255 200 240 35 0 0 chr12 111556166 111556195 -32230260 + (T)n Simple_repeat Simple_repeat 1 29 0 2015 94 0 0 chr12 111556396 111556650 -32229805 - AluSx SINE Alu -58 254 1 516 200 15 85 chr12 111556699 111556829 -32229626 - AluJo SINE Alu -106 206 86 2876 3 3 0 chr12 111557679 111557984 -32228471 + AluYa5 SINE Alu 1 306 -5 2301 57 0 0 chr12 111557996 111558260 -32228195 + AluY SINE Alu 37 300 -11 341 281 196 0 chr12 111558354 111558507 -32227948 + MIR SINE MIR 48 230 -32 661 184 161 36 chr12 111559148 111559316 -32227139 - MER3 DNA MER1_type -7 202 14 2325 101 0 7 chr12 111559387 111559694 -32226761 + AluSg SINE Alu 1 305 -5 1290 291 107 37 chr12 111560093 111561355 -32225100 - L2 LINE L2 0 3313 1967 204 231 0 0 chr12 111562124 111562163 -32224292 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 251 272 0 78 chr12 111562691 111562794 -32223661 + L1M4 LINE L1 2351 2445 -3701 1722 178 3 14 chr12 111563267 111563560 -32222895 - AluJb SINE Alu -22 290 1 4732 183 47 72 chr12 111563767 111564764 -32221691 + L1MA6 LINE L1 5307 6278 -22 771 192 6 19 chr12 111564768 111564924 -32221531 + FRAM SINE Alu 9 162 -14 21 36 0 0 chr12 111565871 111565899 -32220556 + AT_rich Low_complexity Low_complexity 1 28 0 448 246 83 150 chr12 111566101 111566508 -32219947 - MLT1J LTR MaLR -23 488 109 324 292 35 89 chr12 111566982 111567184 -32219271 - MIR3 SINE MIR -3 205 15 211 300 50 12 chr12 111567184 111567264 -32219191 - MER5A DNA MER1_type 0 189 107 * 234 333 104 14 chr12 111567201 111567345 -32219110 + MER5A DNA MER1_type 32 188 -1 22 35 0 0 chr12 111569472 111569501 -32216954 + AT_rich Low_complexity Low_complexity 1 29 0 239 239 63 88 chr12 111569784 111569943 -32216512 - LTR67 LTR ERVL 0 557 403 264 258 58 42 chr12 111570102 111570222 -32216233 - MLT1K LTR MaLR -465 123 2 2425 103 27 46 chr12 111570736 111571038 -32215417 + THE1B LTR MaLR 1 296 -68 2524 61 0 16 chr12 111571038 111571349 -32215106 + AluY SINE Alu 1 306 -5 2425 103 27 46 chr12 111571349 111571416 -32215039 + THE1B LTR MaLR 296 363 -1 6646 113 30 34 chr12 111571523 111572598 -32213857 + MER11C LTR ERVK 1 1071 0 2485 97 0 0 chr12 111572598 111572919 -32213536 + HERVK11 LTR ERVK 1 321 -7632 * 4017 109 14 2 chr12 111572910 111573716 -32212739 + HERVK11 LTR ERVK 200 1078 -6875 2266 107 0 3 chr12 111575200 111575499 -32210956 - AluSx SINE Alu -14 298 1 317 194 15 0 chr12 111575676 111575743 -32210712 + MER87 LTR ERV1 82 149 -392 1020 251 78 66 chr12 111575888 111576314 -32210141 + LTR8A LTR ERV1 121 667 -52 1858 131 62 10 chr12 111576315 111576606 -32209849 - AluSx SINE Alu -6 306 1 252 257 57 0 chr12 111576824 111576894 -32209561 - MIR3 SINE MIR -6 202 129 463 223 96 13 chr12 111577237 111577394 -32209061 - L1MD3 LINE L1 -271 7724 7555 1031 153 0 0 chr12 111577397 111577547 -32208908 + FRAM SINE Alu 1 146 -30 703 232 5 42 chr12 111577562 111577712 -32208743 - L1MD3 LINE L1 -433 7562 7419 1901 171 7 0 chr12 111577712 111578022 -32208433 - AluJo SINE Alu 0 312 1 703 232 5 42 chr12 111578022 111578061 -32208394 - L1MD3 LINE L1 -576 7419 7380 543 204 29 0 chr12 111578062 111578165 -32208290 - MLT1F1 LTR MaLR -460 107 2 321 167 0 0 chr12 111578167 111578221 -32208234 - L1MD3 LINE L1 -718 7277 7224 379 182 15 0 chr12 111578221 111578287 -32208168 - AluS SINE Alu -233 67 1 430 294 11 75 chr12 111578912 111579022 -32207433 + L2 LINE L2 2889 2984 -329 2487 74 3 3 chr12 111579022 111579333 -32207122 - AluY SINE Alu 0 311 1 430 294 11 75 chr12 111579333 111579409 -32207046 + L2 LINE L2 2984 3063 -250 267 273 50 22 chr12 111579509 111579648 -32206807 + LTR16B LTR ERVL 248 390 -74 306 231 13 13 chr12 111580045 111580123 -32206332 + AluS SINE Alu 1 78 -225 969 290 57 27 chr12 111580271 111580747 -32205708 + L2 LINE L2 2812 3301 -12 528 269 216 14 chr12 111580751 111580888 -32205567 + L1ME4a LINE L1 5465 5573 -548 1987 122 36 0 chr12 111580888 111581167 -32205288 + AluJb SINE Alu 1 289 -23 324 0 0 0 chr12 111581167 111581203 -32205252 + (TG)n Simple_repeat Simple_repeat 2 37 0 528 269 216 14 chr12 111581203 111581480 -32204975 + L1ME4a LINE L1 5572 5964 -157 233 271 0 62 chr12 111581515 111581611 -32204844 - L1MC4 LINE L1 -1339 6703 6614 546 209 176 0 chr12 111582744 111582892 -32203563 + MIR SINE MIR 59 232 -30 2653 40 0 3 chr12 111582945 111583246 -32203209 + AluY SINE Alu 1 300 -11 1276 102 64 11 chr12 111583276 111583509 -32202946 + AluJb SINE Alu 87 329 0 284 281 21 0 chr12 111583567 111583663 -32202792 + MIR SINE MIR 145 242 -20 1750 175 56 28 chr12 111584316 111584671 -32201784 + MLT1A1 LTR MaLR 1 365 0 1506 168 105 14 chr12 111584722 111585008 -32201447 + AluJb SINE Alu 1 312 0 258 32 0 0 chr12 111585584 111585615 -32200840 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1984 159 7 0 chr12 111585615 111586084 -32200371 - AluJo SINE Alu 0 471 1 292 229 12 24 chr12 111586290 111586373 -32200082 - MIR SINE MIR -10 252 171 189 0 0 0 chr12 111586811 111586832 -32199623 + (TG)n Simple_repeat Simple_repeat 1 21 0 516 184 62 134 chr12 111586955 111587134 -32199321 - MER63A DNA MER1_type -44 166 1 326 164 30 0 chr12 111587316 111587383 -32199072 + L2 LINE L2 1730 1798 -1516 2208 108 7 7 chr12 111587391 111587698 -32198757 - AluSg SINE Alu -3 307 1 585 251 21 88 chr12 111588173 111588456 -32197999 - LTR67 LTR ERVL -9 548 285 372 270 22 44 chr12 111588513 111588650 -32197805 - LTR67 LTR ERVL -382 175 42 806 190 82 22 chr12 111589312 111589544 -32196911 - Charlie4a DNA MER1_type 0 508 263 1990 152 3 3 chr12 111589545 111589854 -32196601 - AluJb SINE Alu -3 309 1 1938 145 3 7 chr12 111589883 111590172 -32196283 + AluJo SINE Alu 1 288 -24 2062 175 70 10 chr12 111590303 111590703 -32195752 - MSTB LTR MaLR -2 424 1 282 29 0 0 chr12 111590813 111590848 -32195607 + (GGGAGA)n Simple_repeat Simple_repeat 6 40 0 233 311 0 0 chr12 111591324 111591385 -32195070 + A-rich Low_complexity Low_complexity 3 63 0 1946 188 54 12 chr12 111591590 111591999 -32194456 + MLT1C LTR MaLR 42 467 0 412 148 65 0 chr12 111592326 111592495 -32193960 + (TA)n Simple_repeat Simple_repeat 1 180 0 611 281 53 0 chr12 111592509 111592712 -32193743 + Charlie8 DNA MER1_type 74 263 -2154 802 255 9 13 chr12 111592786 111593017 -32193438 + MIR SINE MIR 5 234 -28 1903 193 72 25 chr12 111593958 111594404 -32192051 + MLT1C LTR MaLR 1 467 0 1660 171 36 0 chr12 111594556 111594836 -32191619 - AluJb SINE Alu -22 290 1 246 234 0 0 chr12 111594857 111594934 -32191521 + L1MA10 LINE L1 6258 6334 0 450 279 95 46 chr12 111595780 111596042 -32190413 + L1M4 LINE L1 2608 2882 -3264 1996 217 85 14 chr12 111597123 111597629 -32188826 + MLT1F LTR MaLR 1 542 0 2569 92 3 39 chr12 111597911 111598300 -32188155 + THE1C LTR MaLR 1 375 0 1744 140 56 18 chr12 111598755 111599040 -32187415 - AluJb SINE Alu -16 296 1 448 368 24 0 chr12 111599201 111599410 -32187045 - MIR SINE MIR -35 227 14 305 193 148 11 chr12 111599775 111599863 -32186592 - MIR3 SINE MIR -6 202 103 509 214 0 0 chr12 111599918 111600016 -32186439 + MIR SINE MIR 57 154 -108 248 79 0 0 chr12 111600020 111600058 -32186397 + MADE1 DNA Mariner 6 43 -37 373 153 0 56 chr12 111600129 111600201 -32186254 + MLT1A1-int LTR MaLR 1548 1615 -36 32 26 0 0 chr12 111600611 111600650 -32185805 + AT_rich Low_complexity Low_complexity 1 39 0 508 260 6 41 chr12 111600689 111600858 -32185597 - MIR SINE MIR -77 185 23 210 250 0 0 chr12 111601878 111601922 -32184533 + MIR SINE MIR 109 152 -56 * 481 296 112 0 chr12 111601921 111602117 -32184338 + MIR SINE MIR 9 226 -36 477 268 134 6 chr12 111602235 111602414 -32184041 - MIR SINE MIR 0 262 61 999 218 46 40 chr12 111603236 111603539 -32182916 - L1MC5 LINE L1 -34 7927 7623 3533 47 5 20 chr12 111603540 111603986 -32182469 - L1PA7 LINE L1 -6 6148 5710 1090 133 4 133 chr12 111604445 111604468 -32181987 - AluJo SINE Alu -9 303 279 2093 134 36 38 chr12 111604468 111604833 -32181622 + THE1B LTR MaLR 1 364 0 1090 133 4 133 chr12 111604833 111605057 -32181398 - AluJo SINE Alu -33 279 88 400 167 0 0 chr12 111605154 111605214 -32181241 - AluJ/FLAM SINE Alu -251 61 2 1514 262 95 44 chr12 111605245 111606219 -32180236 - HERV16 LTR ERVL -3911 1085 3 1157 256 47 34 chr12 111606226 111606467 -32179988 - LTR16A LTR ERVL -7 443 194 1754 189 36 19 chr12 111606467 111606826 -32179629 + MLT1A1 LTR MaLR 1 365 0 1157 256 47 34 chr12 111606826 111606971 -32179484 - LTR16A LTR ERVL -256 194 52 519 265 73 40 chr12 111606975 111607191 -32179264 + MLT1H LTR MaLR 14 289 -260 2003 139 11 69 chr12 111607365 111607519 -32178936 + MER1B DNA MER1_type 1 162 -2550 2177 112 3 10 chr12 111607519 111607814 -32178641 + AluSg SINE Alu 1 293 -17 2003 139 11 69 chr12 111607814 111608019 -32178436 + MER1B DNA MER1_type 162 339 0 414 206 39 12 chr12 111608049 111608157 -32178298 + MLT1H LTR MaLR 454 546 -3 243 203 0 34 chr12 111608629 111608688 -32177767 + L2 LINE L2 3216 3272 0 489 250 141 21 chr12 111608991 111609183 -32177272 + MIR SINE MIR 48 262 0 240 283 53 26 chr12 111610073 111610186 -32176269 + MIR SINE MIR 67 182 -80 288 0 0 0 chr12 111610583 111610615 -32175840 + (CAA)n Simple_repeat Simple_repeat 2 33 0 361 318 38 8 chr12 111610744 111610876 -32175579 - LTR33 LTR ERVL -364 157 22 187 290 60 40 chr12 111611126 111611226 -32175229 + MIR SINE MIR 24 125 -137 1134 272 69 5 chr12 111611228 111611607 -32174848 - LTR16C LTR ERVL 0 491 89 273 274 135 43 chr12 111611828 111611955 -32174500 - MIR SINE MIR -69 139 11 287 91 0 0 chr12 111612310 111612354 -32174101 - MER20B DNA MER1_type -32 751 708 2201 149 14 40 chr12 111612392 111612696 -32173759 - L1MB3 LINE L1 0 6183 5873 928 103 29 11 chr12 111612696 111612870 -32173585 + CT-rich Low_complexity Low_complexity 2 178 0 1982 133 18 0 chr12 111612872 111613157 -32173298 - AluSx SINE Alu -20 292 3 2201 149 14 40 chr12 111613157 111613278 -32173177 - L1MB3 LINE L1 -311 5872 5766 1050 224 5 0 chr12 111613278 111613479 -32172976 - L1PA16 LINE L1 -21 6145 5944 * 1696 134 4 19 chr12 111613454 111613722 -32172733 - L1MB3 LINE L1 -384 5799 5536 1175 266 156 32 chr12 111613722 111614287 -32172168 - MER20B DNA MER1_type -142 641 7 217 273 62 56 chr12 111614831 111614992 -32171463 + MIR SINE MIR 20 181 -81 1825 141 0 0 chr12 111615058 111615342 -32171113 + L1PA13 LINE L1 4796 5079 -1067 242 135 0 0 chr12 111615339 111615376 -32171079 - L1P LINE L1 -786 5382 5346 * 5799 85 7 29 chr12 111615376 111616202 -32170253 + L1PA13 LINE L1 5337 6144 -19 2014 114 29 26 chr12 111616214 111616521 -32169934 + AluSp SINE Alu 1 308 -5 2547 168 18 13 chr12 111616542 111616994 -32169461 - MLT2C2 LTR ERVL 0 464 11 201 263 0 18 chr12 111617588 111617645 -32168810 - MIR SINE MIR -57 205 150 1988 149 0 3 chr12 111618849 111619145 -32167310 - AluSx SINE Alu -17 295 1 221 326 51 10 chr12 111619145 111619243 -32167212 - MIR SINE MIR -59 203 102 673 274 49 51 chr12 111619541 111619931 -32166524 - LTR16B LTR ERVL -74 390 2 851 211 10 21 chr12 111620129 111620323 -32166132 + MIR SINE MIR 11 202 -60 26 0 0 0 chr12 111620559 111620585 -32165870 + AT_rich Low_complexity Low_complexity 1 26 0 2045 102 0 7 chr12 111620920 111621195 -32165260 - AluSg SINE Alu -16 294 22 461 310 88 30 chr12 111621612 111621941 -32164514 - L1MC4a LINE L1 -1897 5911 5564 588 226 0 0 chr12 111621959 111622114 -32164341 + (TATAG)n Simple_repeat Simple_repeat 1 155 0 343 227 27 17 chr12 111622210 111622359 -32164096 + MIR SINE MIR 32 238 -24 267 281 73 10 chr12 111623193 111623289 -32163166 + MIR SINE MIR 49 150 -112 594 306 119 32 chr12 111623304 111623706 -32162749 - MLT1K LTR MaLR -11 577 141 278 219 78 0 chr12 111624361 111624425 -32162030 + MIR SINE MIR 73 141 -121 2262 84 0 7 chr12 111624426 111624722 -32161733 - AluY SINE Alu -17 294 1 680 209 144 32 chr12 111625338 111625525 -32160930 - MER3 DNA MER1_type 0 209 2 223 291 155 0 chr12 111625790 111625893 -32160562 - MIR SINE MIR -37 225 107 345 279 108 16 chr12 111626223 111626352 -32160103 + MIR SINE MIR 12 152 -110 23 68 0 0 chr12 111626673 111626717 -32159738 + AT_rich Low_complexity Low_complexity 1 44 0 237 33 0 0 chr12 111627351 111627381 -32159074 + (TG)n Simple_repeat Simple_repeat 2 31 0 507 283 35 7 chr12 111627822 111627967 -32158488 + MLT1I LTR MaLR 33 181 -228 331 313 53 13 chr12 111628203 111628353 -32158102 + MIR SINE MIR 32 187 -75 252 59 0 0 chr12 111628476 111628510 -32157945 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 186 103 0 0 chr12 111628563 111628592 -32157863 + (GA)n Simple_repeat Simple_repeat 1 29 0 542 235 10 0 chr12 111628635 111628733 -32157722 + MER81 DNA DNA 11 109 -5 240 59 0 0 chr12 111628733 111628767 -32157688 + (TG)n Simple_repeat Simple_repeat 1 34 0 183 340 21 43 chr12 111628839 111628980 -32157475 - L2 LINE L2 -683 2631 2494 356 40 20 0 chr12 111630136 111630186 -32156269 + (CA)n Simple_repeat Simple_repeat 1 51 0 2345 94 3 0 chr12 111630393 111630691 -32155764 + AluSx SINE Alu 2 300 -12 4266 127 38 23 chr12 111632074 111632594 -32153861 - Tigger3(Golem) DNA MER2_type -1 3027 2491 2029 78 0 0 chr12 111632594 111632838 -32153617 - AluY SINE Alu -16 295 52 4266 127 38 23 chr12 111632838 111633057 -32153398 - Tigger3(Golem) DNA MER2_type -537 2491 2277 580 223 0 0 chr12 111633048 111633151 -32153304 - Tigger3(Golem) DNA MER2_type -2921 108 6 * 1641 200 66 24 chr12 111633171 111633551 -32152904 - MSTD LTR MaLR 0 396 1 6836 236 35 37 chr12 111633552 111634739 -32151716 - MSTD-int LTR MaLR 0 1735 550 2303 114 0 0 chr12 111634739 111635045 -32151410 - AluSg SINE Alu -4 306 1 6836 236 35 37 chr12 111635045 111635594 -32150861 - MSTD-int LTR MaLR -1185 550 2 911 228 18 12 chr12 111635596 111635821 -32150634 - MSTD LTR MaLR 0 396 194 524 185 66 0 chr12 111635855 111635975 -32150480 + MSTC LTR MaLR 1 136 -229 320 268 33 91 chr12 111637096 111637339 -32149116 + LTR37A-int LTR ERV1 1695 1923 -4878 818 189 72 0 chr12 111637351 111637503 -32148952 + MER2 DNA MER2_type 1 163 -182 1743 161 31 74 chr12 111637503 111637751 -32148704 - THE1C LTR MaLR 0 375 149 1971 72 0 0 chr12 111637751 111637987 -32148468 + AluY SINE Alu 76 311 0 1743 161 31 74 chr12 111637987 111638130 -32148325 - THE1C LTR MaLR -226 149 1 9284 116 62 65 chr12 111638130 111638898 -32147557 - THE1C-int LTR MaLR 0 1580 812 1874 88 23 4 chr12 111638898 111639161 -32147294 - L1PA8 LINE L1 0 6172 5905 9284 116 62 65 chr12 111639161 111639976 -32146479 - THE1C-int LTR MaLR -768 812 1 1540 140 117 51 chr12 111639976 111640327 -32146128 - THE1C LTR MaLR 0 375 2 896 182 57 0 chr12 111640328 111640504 -32145951 + MER2 DNA MER2_type 159 344 -1 2113 75 43 4 chr12 111640839 111641143 -32145312 - AluY SINE Alu 0 311 1 495 232 88 67 chr12 111641316 111641657 -32144798 + LTR37A-int LTR ERV1 1738 2085 -2851 327 245 0 91 chr12 111641949 111642092 -32144363 + LTR37A-int LTR ERV1 3985 4114 -533 1014 244 55 91 chr12 111642105 111642655 -32143800 + MER34 LTR ERV1 11 540 -2 2109 215 28 26 chr12 111642658 111643160 -32143295 + LTR37A-int LTR ERV1 4114 4616 -31 592 291 54 0 chr12 111643436 111643638 -32142817 + MER110A LTR ERV1 212 424 -44 3372 142 143 22 chr12 111643638 111644267 -32142188 + MER50 LTR ERV1 1 705 -29 318 120 21 5 chr12 111644274 111644342 -32142113 + MER110A LTR ERV1 399 468 0 1009 166 39 88 chr12 111644361 111644692 -32141763 - LTR37A LTR ERV1 -109 317 3 339 292 15 23 chr12 111644693 111644823 -32141632 - MIR SINE MIR -28 234 106 1021 174 125 64 chr12 111645017 111645344 -32141111 + LTR37A LTR ERV1 78 424 -2 1257 227 63 72 chr12 111645965 111646410 -32140045 - MLT1K LTR MaLR -1 587 147 2242 31 0 0 chr12 111646463 111646724 -32139731 + L1PA3 LINE L1 5887 6147 -8 270 0 0 0 chr12 111646858 111646897 -32139558 + L1PA4 LINE L1 6117 6155 0 3604 103 90 11 chr12 111646984 111647549 -32138906 + MER4B LTR ERV1 1 610 0 400 282 4 137 chr12 111648553 111648794 -32137661 - MIR SINE MIR -31 231 23 829 301 126 32 chr12 111648814 111649401 -32137054 - L2 LINE L2 -410 2904 2263 1620 211 30 42 chr12 111649430 111649897 -32136558 - MLT1C LTR MaLR 0 467 5 186 319 93 11 chr12 111649956 111650138 -32136317 - L2 LINE L2 -1133 2181 1985 30 45 0 0 chr12 111650227 111650271 -32136184 + AT_rich Low_complexity Low_complexity 1 44 0 1805 169 10 13 chr12 111650354 111650667 -32135788 - AluJo SINE Alu 0 312 1 1029 256 0 0 chr12 111652665 111652876 -32133579 - MER58A DNA MER1_type -12 212 2 197 315 174 28 chr12 111652876 111653089 -32133366 + L2 LINE L2 2731 2974 -340 2269 135 30 25 chr12 111653789 111654151 -32132304 + THE1B LTR MaLR 1 364 0 288 301 65 8 chr12 111654184 111654307 -32132148 - MIR SINE MIR -2 260 131 1123 246 107 42 chr12 111654307 111654709 -32131746 - MLT1F1 LTR MaLR 0 567 140 726 175 98 88 chr12 111654716 111654910 -32131545 + MLT1A1 LTR MaLR 1 196 -169 431 310 0 16 chr12 111654980 111655109 -32131346 - MLT1F1 LTR MaLR -466 127 1 337 277 118 0 chr12 111655110 111655229 -32131226 - MIR SINE MIR -128 134 2 249 206 32 16 chr12 111655229 111655289 -32131166 - MER5B DNA MER1_type -114 64 4 439 213 234 0 chr12 111655301 111655442 -32131013 - MER5A DNA MER1_type -7 182 9 195 167 0 0 chr12 111655547 111655589 -32130866 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 215 268 18 0 chr12 111655678 111655734 -32130721 + L2 LINE L2 3001 3057 -215 414 278 0 0 chr12 111655815 111655912 -32130543 - MER91B DNA MER1_type 0 190 94 41 36 0 0 chr12 111655943 111655998 -32130457 + AT_rich Low_complexity Low_complexity 1 55 0 2547 51 3 0 chr12 111656349 111656645 -32129810 + AluY SINE Alu 1 297 -14 349 273 31 19 chr12 111657334 111657495 -32128960 + L1ME4a LINE L1 5941 6103 -18 303 296 93 0 chr12 111657520 111657628 -32128827 - L2 LINE L2 -33 3239 3122 214 283 17 0 chr12 111657630 111657690 -32128765 + MER91B DNA MER1_type 31 91 -99 47 61 0 0 chr12 111657852 111657934 -32128521 + AT_rich Low_complexity Low_complexity 1 82 0 1316 309 91 27 chr12 111658007 111658517 -32127938 + L2 LINE L2 2359 2959 -354 1923 210 44 101 chr12 111658517 111659089 -32127366 - MLT1F LTR MaLR 0 542 4 1316 309 91 27 chr12 111659089 111659466 -32126989 + L2 LINE L2 2959 3311 -2 420 180 0 149 chr12 111660264 111660425 -32126030 - LTR37B LTR ERV1 0 468 332 276 30 0 0 chr12 111660435 111660468 -32125987 + (CA)n Simple_repeat Simple_repeat 2 34 0 195 184 0 0 chr12 111660472 111660510 -32125945 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 557 300 57 24 chr12 111660874 111661084 -32125371 - MIR SINE MIR -15 247 31 847 209 9 62 chr12 111661456 111661681 -32124774 + MER96B DNA MER1_type? 43 255 -162 470 211 56 56 chr12 111661812 111661954 -32124501 - L1ME3A LINE L1 -29 6141 6000 374 301 82 3 chr12 111662881 111663077 -32123378 + MIR SINE MIR 50 262 0 942 266 40 72 chr12 111663335 111663622 -32122833 + LTR16A1 LTR ERVL 43 313 -144 1672 172 0 35 chr12 111663622 111663936 -32122519 - AluJb SINE Alu -9 303 1 942 266 40 72 chr12 111663936 111664076 -32122379 + LTR16A1 LTR ERVL 313 456 -1 590 259 78 120 chr12 111664585 111664967 -32121488 - MLT1J LTR MaLR 0 511 146 226 186 0 23 chr12 111665020 111665063 -32121392 - MLT1J LTR MaLR -467 44 3 689 281 17 21 chr12 111666396 111666657 -32119798 - MIR SINE MIR -2 260 3 193 274 0 0 chr12 111666923 111666974 -32119481 + L2 LINE L2 3217 3267 -5 234 0 0 0 chr12 111667364 111667390 -32119065 + (TG)n Simple_repeat Simple_repeat 2 27 0 515 224 6 0 chr12 111670092 111670266 -32116189 + (TG)n Simple_repeat Simple_repeat 2 176 0 582 218 0 0 chr12 111670301 111670586 -32115869 + (TG)n Simple_repeat Simple_repeat 1 285 0 392 222 11 11 chr12 111670643 111670733 -32115722 - MER5B DNA MER1_type -14 164 75 189 241 0 0 chr12 111671044 111671098 -32115357 + CT-rich Low_complexity Low_complexity 3 56 0 306 269 93 0 chr12 111671105 111671213 -32115242 - L2 LINE L2 -5 3308 3191 420 281 17 67 chr12 111671612 111671850 -32114605 - L1ME3A LINE L1 -215 5955 5730 2387 77 0 17 chr12 111671850 111672150 -32114305 - AluSc SINE Alu -11 298 4 866 235 80 111 chr12 111673271 111673731 -32112724 + LTR16A1 LTR ERVL 8 453 -4 240 188 47 31 chr12 111674589 111674653 -32111802 - LTR16A1 LTR ERVL -4 453 389 193 265 48 12 chr12 111674715 111674798 -32111657 - L2 LINE L2 -124 3189 3104 219 360 9 26 chr12 111675886 111676000 -32110455 + L2 LINE L2 2874 2985 -287 428 244 9 17 chr12 111676891 111677006 -32109449 - MIR SINE MIR -70 138 25 406 302 39 22 chr12 111677418 111677600 -32108855 - MIR SINE MIR -72 190 6 189 0 0 0 chr12 111678110 111678131 -32108324 + (T)n Simple_repeat Simple_repeat 1 21 0 1784 139 21 10 chr12 111678997 111679285 -32107170 - AluJb SINE Alu -16 296 6 234 194 0 45 chr12 111679336 111679403 -32107052 + A-rich Low_complexity Low_complexity 2 65 0 248 179 60 0 chr12 111679518 111679585 -32106870 + MIR SINE MIR 71 141 -121 215 267 178 11 chr12 111679711 111679801 -32106654 + L2 LINE L2 3205 3309 -4 233 328 177 0 chr12 111681081 111681267 -32105188 - L2 LINE L2 -257 3056 2838 215 288 75 0 chr12 111681912 111681992 -32104463 - MIR SINE MIR -65 143 58 671 222 64 53 chr12 111682358 111682624 -32103831 + ORSL DNA AcHobo 5 273 -2 267 163 0 0 chr12 111682970 111683013 -32103442 - MER116 DNA Mariner 0 80 38 705 203 135 0 chr12 111683194 111683357 -32103098 - MER5A DNA MER1_type -4 185 1 1968 215 40 16 chr12 111683413 111683864 -32102591 + MLT1C LTR MaLR 1 462 -5 305 188 0 8 chr12 111683892 111684004 -32102451 - MER66A LTR ERV1 -1 485 290 2103 125 0 7 chr12 111684027 111684316 -32102139 + AluSx SINE Alu 1 287 -25 388 253 22 0 chr12 111684380 111684471 -32101984 - MER66A LTR ERV1 -217 261 169 256 289 10 39 chr12 111684448 111684552 -32101903 - MER41A LTR ERV1 -253 301 201 * 529 192 0 10 chr12 111684773 111684872 -32101583 - AluJ/FLAM SINE Alu -214 98 1 944 189 88 9 chr12 111684872 111685100 -32101355 - Charlie4 DNA MER1_type -1686 275 30 391 297 0 65 chr12 111686350 111686488 -32099967 + MIR SINE MIR 23 151 -111 213 39 0 0 chr12 111687181 111687207 -32099248 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 229 328 37 15 chr12 111687646 111687780 -32098675 - L2 LINE L2 0 3313 3177 1457 205 92 15 chr12 111687999 111688336 -32098119 - MLT1A1 LTR MaLR -1 364 2 236 53 26 0 chr12 111688816 111688854 -32097601 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 862 67 0 0 chr12 111688854 111688958 -32097497 - L1PA10 LINE L1 -18 6150 6047 316 339 93 14 chr12 111690155 111690435 -32096020 + L2 LINE L2 2448 2749 -565 345 330 59 29 chr12 111690473 111690712 -32095743 + L2 LINE L2 2836 3081 -191 250 247 86 11 chr12 111691331 111691424 -32095031 - L2 LINE L2 -16 3256 3157 938 163 7 0 chr12 111691668 111691815 -32094640 - AluSg/x SINE Alu -39 271 124 2052 135 10 3 chr12 111691816 111692113 -32094342 - AluJo SINE Alu -13 299 1 292 229 12 24 chr12 111692319 111692402 -32094053 - MIR SINE MIR -10 252 171 189 0 0 0 chr12 111692839 111692860 -32093595 + (TG)n Simple_repeat Simple_repeat 1 21 0 452 197 62 129 chr12 111692986 111693164 -32093291 - MER63A DNA MER1_type -44 166 1 317 164 45 0 chr12 111693347 111693414 -32093041 + L2 LINE L2 1730 1799 -1515 2228 108 7 7 chr12 111693421 111693727 -32092728 - AluSg SINE Alu -4 306 1 585 251 21 88 chr12 111694202 111694485 -32091970 - LTR67 LTR ERVL -9 548 285 390 259 127 25 chr12 111694542 111694700 -32091755 - LTR67 LTR ERVL -382 175 2 722 180 0 0 chr12 111694861 111694972 -32091483 + Tigger3(Golem) DNA MER2_type 2928 3038 0 3267 119 30 104 chr12 111694972 111695038 -32091417 + L1MA6 LINE L1 5380 5449 -851 5485 56 19 1 chr12 111695038 111695714 -32090741 - LTR12 LTR ERV1 0 688 1 3267 119 30 104 chr12 111695714 111696388 -32090067 + L1MA6 LINE L1 5449 6065 -235 1211 126 33 104 chr12 111696384 111696654 -32089801 + L1MB8 LINE L1 5928 6178 0 * 277 268 190 45 chr12 111697497 111697676 -32088779 - MIR SINE MIR -26 236 32 227 319 35 0 chr12 111697772 111697885 -32088570 + MIR3 SINE MIR 65 181 -27 311 264 132 0 chr12 111698072 111698163 -32088292 + MIR SINE MIR 50 152 -110 376 229 12 0 chr12 111698722 111698805 -32087650 + MIR SINE MIR 108 191 -71 814 298 59 11 chr12 111699140 111699412 -32087043 - MLT1J LTR MaLR -42 469 185 651 315 5 11 chr12 111699444 111699644 -32086811 - MLT1J LTR MaLR -286 188 1 24 32 0 0 chr12 111699702 111699733 -32086722 + AT_rich Low_complexity Low_complexity 1 31 0 1062 184 14 32 chr12 111699765 111699983 -32086472 - AluJo SINE Alu -94 218 5 357 141 35 0 chr12 111700546 111700631 -32085824 + GA-rich Low_complexity Low_complexity 1 88 0 284 197 16 0 chr12 111700729 111700790 -32085665 - MLT1K LTR MaLR -5 583 522 548 287 55 0 chr12 111700941 111701105 -32085350 - MLT1K LTR MaLR -414 174 2 431 122 0 12 chr12 111701124 111701206 -32085249 + (GA)n Simple_repeat Simple_repeat 2 82 0 356 242 12 12 chr12 111701273 111701434 -32085021 + GA-rich Low_complexity Low_complexity 1 161 0 183 392 0 10 chr12 111702754 111702856 -32083599 + MIR SINE MIR 47 147 -115 1018 163 29 67 chr12 111703169 111703409 -32083046 - L1MB7 LINE L1 0 6184 5954 725 188 97 17 chr12 111703623 111703799 -32082656 + MER33 DNA MER1_type 2 191 -133 220 211 19 0 chr12 111704053 111704105 -32082350 + L2 LINE L2 3257 3309 -4 2336 102 0 0 chr12 111704605 111704899 -32081556 + AluSc SINE Alu 1 294 -15 207 0 0 0 chr12 111704902 111704925 -32081530 + (CAA)n Simple_repeat Simple_repeat 2 24 0 191 276 0 53 chr12 111705022 111705098 -32081357 - MIR3 SINE MIR -135 73 2 543 249 90 51 chr12 111705387 111705564 -32080891 - MLT1K LTR MaLR -90 498 315 292 103 0 0 chr12 111707135 111707174 -32079281 - MLT2B2 LTR ERVL 0 515 477 1510 208 0 17 chr12 111707559 111707857 -32078598 + AluJo SINE Alu 1 293 -19 43959 47 5 3 chr12 111708299 111714441 -32072014 - L1PA4 LINE L1 0 6155 4 1775 162 25 164 chr12 111714452 111714976 -32071479 - MLT2B2 LTR ERVL -64 451 1 213 39 0 0 chr12 111715009 111715035 -32071420 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 205 304 14 0 chr12 111715616 111715685 -32070770 + GA-rich Low_complexity Low_complexity 4 73 0 196 283 0 0 chr12 111716623 111716676 -32069779 - MIR SINE MIR -13 249 197 191 342 63 19 chr12 111716791 111716949 -32069506 - MIR SINE MIR -78 184 20 439 297 31 47 chr12 111717103 111717300 -32069155 - MER20B DNA MER1_type -4 215 19 225 0 0 0 chr12 111717654 111717679 -32068776 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 203 213 43 0 chr12 111718029 111718076 -32068379 - L2 LINE L2 -3 3310 3262 499 257 142 20 chr12 111718177 111718384 -32068071 - MIR SINE MIR -14 248 25 203 267 0 0 chr12 111718860 111718905 -32067550 - L2 LINE L2 -6 3307 3263 996 253 46 43 chr12 111719721 111720089 -32066366 - L1ME3A LINE L1 -5 6165 5797 181 206 0 0 chr12 111720103 111720137 -32066318 + MIR SINE MIR 224 257 -5 1190 284 19 19 chr12 111720219 111720592 -32065863 - L1ME3A LINE L1 -381 5789 5417 * 2592 235 3 17 chr12 111720588 111721187 -32065268 - L1MD3 LINE L1 -2 7993 7403 304 234 11 85 chr12 111721190 111721284 -32065171 - MLT1F1 LTR MaLR -446 121 35 1614 47 5 0 chr12 111721498 111721689 -32064766 - LTR5 LTR ERVK -777 192 1 301 256 111 43 chr12 111721990 111722107 -32064348 - L2 LINE L2 -2 3270 3146 1701 215 89 5 chr12 111722362 111722744 -32063711 + LTR40c LTR ERVL 50 463 -2 1615 195 27 39 chr12 111723492 111723826 -32062629 + MER58B DNA MER1_type 1 330 -11 355 242 227 15 chr12 111723832 111723964 -32062491 - MER5A DNA MER1_type -2 187 28 185 380 33 24 chr12 111724553 111724766 -32061689 + L2 LINE L2 2870 3084 -188 287 271 42 42 chr12 111725085 111725203 -32061252 - MIR SINE MIR -64 144 27 279 0 0 0 chr12 111725774 111725805 -32060650 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 608 212 0 0 chr12 111725808 111725907 -32060548 + AluJ/FLAM SINE Alu 1 99 -213 237 324 101 36 chr12 111726143 111726362 -32060093 - L2 LINE L2 -174 3098 2866 265 384 38 8 chr12 111726458 111726591 -32059864 - L2 LINE L2 -9 3263 3127 310 329 13 34 chr12 111726746 111726865 -32059590 + MIR SINE MIR 2 119 -143 2194 122 36 28 chr12 111726865 111727226 -32059229 + THE1B LTR MaLR 1 364 0 310 329 13 34 chr12 111727226 111727255 -32059200 + MIR SINE MIR 119 147 -115 531 280 60 33 chr12 111728149 111728282 -32058173 + MIR SINE MIR 5 146 -116 1781 163 3 17 chr12 111728282 111728577 -32057878 + AluJo SINE Alu 1 291 -21 531 280 60 33 chr12 111728577 111728625 -32057830 + MIR SINE MIR 146 191 -71 391 329 33 43 chr12 111728681 111728891 -32057564 - L2 LINE L2 0 3272 3065 310 365 13 6 chr12 111728895 111729054 -32057401 + (TGG)n Simple_repeat Simple_repeat 1 160 0 * 377 283 5 63 chr12 111728943 111729134 -32057321 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 313 309 0 10 chr12 111729093 111729190 -32057265 + (TGG)n Simple_repeat Simple_repeat 1 96 0 * 2057 137 20 0 chr12 111730608 111730907 -32055548 - AluSx SINE Alu -7 305 1 3406 166 16 25 chr12 111730913 111731586 -32054869 - L1MA7 LINE L1 0 6291 5625 233 266 47 0 chr12 111731596 111731660 -32054795 - MIR3 SINE MIR -32 176 110 516 243 70 56 chr12 111731716 111731930 -32054525 - MIR SINE MIR -10 252 36 519 150 16 0 chr12 111732033 111732137 -32054318 + MER5A DNA MER1_type 4 109 -80 273 311 0 29 chr12 111732199 111732302 -32054153 + MIR SINE MIR 89 188 -74 300 68 23 0 chr12 111733548 111733592 -32052863 - MADE1 DNA Mariner -1 79 35 254 231 112 22 chr12 111733614 111733748 -32052707 + MIR SINE MIR 46 191 -71 2349 94 0 3 chr12 111733908 111734207 -32052248 + AluSc SINE Alu 1 298 -11 192 335 53 33 chr12 111734288 111734440 -32052015 - L2 LINE L2 -9 3263 3109 639 191 7 7 chr12 111734843 111734984 -32051471 + L1ME1 LINE L1 5756 5896 -270 453 233 135 54 chr12 111734988 111735284 -32051171 - L1ME LINE L1 -588 5576 5257 270 261 99 28 chr12 111735330 111735472 -32050983 + MLT1H1 LTR MaLR 291 442 -113 185 300 33 0 chr12 111735572 111735632 -32050823 + MIR SINE MIR 48 109 -153 405 239 217 7 chr12 111735744 111735882 -32050573 - MIR SINE MIR -77 185 19 1226 274 110 8 chr12 111736645 111737318 -32049137 - L2 LINE L2 -1 3312 2560 1321 179 7 62 chr12 111737451 111737724 -32048731 + AluJo SINE Alu 1 258 -54 374 191 0 0 chr12 111737732 111737826 -32048629 - Zaphod DNA AcHobo -77 3954 3861 2309 72 10 0 chr12 111738097 111738389 -32048066 - AluY SINE Alu -16 295 1 4558 171 42 16 chr12 111738483 111739452 -32047003 - L1MB8 LINE L1 0 6178 5185 2126 154 25 6 chr12 111739615 111739972 -32046483 - MSTA LTR MaLR -64 364 1 420 292 183 35 chr12 111740247 111740578 -32045877 + L2 LINE L2 2603 2883 -430 2875 170 37 42 chr12 111740578 111740719 -32045736 - MLT2B2 LTR ERVL 0 515 375 2501 70 0 7 chr12 111740719 111741020 -32045435 + AluY SINE Alu 3 301 -10 2875 170 37 42 chr12 111741020 111741396 -32045059 - MLT2B2 LTR ERVL -140 375 1 420 292 183 35 chr12 111741396 111741642 -32044813 + L2 LINE L2 2883 3263 -50 216 0 0 0 chr12 111741652 111741676 -32044779 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 297 0 0 0 chr12 111741675 111741708 -32044747 + (TA)n Simple_repeat Simple_repeat 1 33 0 238 278 31 0 chr12 111741725 111741822 -32044633 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 1858 156 42 68 chr12 111741830 111742215 -32044240 - THE1C LTR MaLR 0 375 1 9949 117 59 7 chr12 111742215 111743717 -32042738 - THE1C-int LTR MaLR 0 1580 1 1662 141 61 72 chr12 111743717 111744079 -32042376 - THE1C LTR MaLR 0 375 18 313 277 129 0 chr12 111744322 111744423 -32042032 - L2 LINE L2 -18 3295 3182 1104 258 63 77 chr12 111744514 111744956 -32041499 + MLT1H LTR MaLR 54 489 -60 5502 144 26 50 chr12 111745470 111745660 -32040795 - L1MA9 LINE L1 -30 6282 6089 1923 137 48 43 chr12 111745660 111746033 -32040422 + THE1C LTR MaLR 1 375 0 5502 144 26 50 chr12 111746033 111747005 -32039450 - L1MA9 LINE L1 -223 6089 5148 255 406 88 0 chr12 111747007 111747167 -32039288 - L2 LINE L2 -13 3259 3086 266 118 0 0 chr12 111747863 111747897 -32038558 - MER58A DNA MER1_type 0 224 191 * 1349 268 105 3 chr12 111747895 111748287 -32038168 - MLT1E LTR MaLR -43 550 119 27 0 0 0 chr12 111748445 111748472 -32037983 + AT_rich Low_complexity Low_complexity 1 27 0 2517 128 28 17 chr12 111748673 111749033 -32037422 - THE1B LTR MaLR 0 364 1 214 243 0 0 chr12 111749913 111749950 -32036505 + L2 LINE L2 3203 3239 -33 569 260 19 19 chr12 111750059 111750213 -32036242 + MIR SINE MIR 2 155 -107 1808 152 158 9 chr12 111750232 111750568 -32035887 + MLT1F1 LTR MaLR 182 567 0 459 0 0 0 chr12 111750571 111750622 -32035833 + (TG)n Simple_repeat Simple_repeat 2 52 0 337 291 11 137 chr12 111750622 111750829 -32035626 - L2 LINE L2 -79 3193 3048 2136 123 0 3 chr12 111750829 111751121 -32035334 - AluSx SINE Alu -21 291 1 337 291 11 137 chr12 111751121 111751270 -32035185 - L2 LINE L2 -224 3048 2882 236 363 75 41 chr12 111751926 111752221 -32034234 + L2 LINE L2 2870 3174 -98 434 300 21 14 chr12 111752590 111752730 -32033725 - MER5A DNA MER1_type -2 187 47 377 316 15 7 chr12 111754134 111754270 -32032185 + LTR16B LTR ERVL 11 147 -317 2625 117 11 16 chr12 111754292 111754669 -32031786 + THE1C LTR MaLR 1 375 0 627 273 81 41 chr12 111754737 111755008 -32031447 + LTR16B LTR ERVL 183 464 0 207 344 16 23 chr12 111755206 111755334 -32031121 - MIR SINE MIR -116 146 20 821 312 118 27 chr12 111755650 111756414 -32030041 + L2 LINE L2 2474 3309 -4 439 320 43 26 chr12 111756733 111756964 -32029491 - MIR SINE MIR 0 262 28 271 278 139 9 chr12 111757413 111757521 -32028934 + MIR SINE MIR 48 169 -93 389 307 13 20 chr12 111757825 111757978 -32028477 - MIR SINE MIR 0 262 111 213 222 0 74 chr12 111758059 111758113 -32028342 + L2 LINE L2 3262 3311 -2 1042 231 37 0 chr12 111758120 111758336 -32028119 - MER58A DNA MER1_type 0 224 1 289 215 19 4 chr12 111758374 111758485 -32027970 - MIR SINE MIR -12 250 92 440 303 148 0 chr12 111758581 111758736 -32027719 + MER5A DNA MER1_type 9 186 -3 207 167 0 0 chr12 111760358 111760400 -32026055 + (TAA)n Simple_repeat Simple_repeat 1 42 0 609 285 75 9 chr12 111760413 111760627 -32025828 - MIR SINE MIR -12 250 23 5774 125 19 30 chr12 111760771 111761745 -32024710 - Tigger3b DNA MER2_type -266 965 2 784 171 63 6 chr12 111761745 111761920 -32024535 - L1 LINE L1 -764 5382 5198 * 1981 167 68 0 chr12 111761913 111762308 -32024147 - L1 LINE L1 -784 5362 4941 1184 195 13 35 chr12 111762341 111762572 -32023883 + AluJo SINE Alu 67 292 -20 2473 139 10 7 chr12 111762587 111762991 -32023464 - L1 LINE L1 -1191 4955 4551 858 176 3 10 chr12 111763744 111764059 -32022396 + (CCA)n Simple_repeat Simple_repeat 1 312 0 344 296 6 0 chr12 111764022 111764198 -32022257 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 * 246 143 0 0 chr12 111764886 111764935 -32021520 + (A)n Simple_repeat Simple_repeat 1 49 0 2506 115 3 6 chr12 111765400 111765740 -32020715 - L1PB3 LINE L1 -2 6152 5814 7638 65 10 2 chr12 111766559 111767518 -32018937 - LTR5 LTR ERVK 0 969 3 1156 197 14 0 chr12 111767676 111767894 -32018561 + Ricksha DNA DNA 63 283 -2963 8164 148 9 26 chr12 111767925 111769306 -32017149 + Ricksha DNA DNA 1845 3201 -45 767 225 21 52 chr12 111770886 111771077 -32015378 + MIR SINE MIR 12 196 -66 2052 136 3 10 chr12 111771578 111771886 -32014569 + AluSx SINE Alu 1 306 -6 1540 171 65 10 chr12 111772534 111772827 -32013628 - AluJb SINE Alu -3 309 1 203 274 32 84 chr12 111772935 111773030 -32013425 + MIR SINE MIR 102 191 -71 275 286 22 44 chr12 111773230 111773321 -32013134 - MIR SINE MIR -103 105 17 486 268 22 14 chr12 111773515 111773653 -32012802 - MIR SINE MIR -77 185 47 750 281 201 37 chr12 111773653 111774116 -32012339 - LTR67 LTR ERVL 0 557 19 289 303 172 0 chr12 111774381 111774480 -32011975 + L2 LINE L2 3153 3268 -4 845 246 57 25 chr12 111774543 111774823 -32011632 - L2 LINE L2 -843 2471 2183 28 0 0 0 chr12 111774859 111774887 -32011568 + AT_rich Low_complexity Low_complexity 1 28 0 428 321 19 13 chr12 111775512 111775671 -32010784 + MIR SINE MIR 14 173 -89 462 302 95 30 chr12 111775729 111775961 -32010494 - L2 LINE L2 -544 2770 2524 22 56 0 0 chr12 111775978 111776014 -32010441 + AT_rich Low_complexity Low_complexity 1 36 0 520 224 201 50 chr12 111776120 111776159 -32010296 - MIR SINE MIR -21 241 209 2228 179 89 69 chr12 111776159 111776197 -32010258 - MLT2B1 LTR ERVL -2 518 482 254 0 0 77 chr12 111776197 111776236 -32010219 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2228 179 89 69 chr12 111776236 111776705 -32009750 - MLT2B1 LTR ERVL -38 482 1 520 224 201 50 chr12 111776705 111776844 -32009611 - MIR SINE MIR -53 209 36 186 356 40 20 chr12 111777367 111777468 -32008987 + L2 LINE L2 2948 3050 -222 314 311 44 0 chr12 111777523 111777613 -32008842 - L2 LINE L2 -20 3252 3159 960 213 27 0 chr12 111777613 111777801 -32008654 + MER3 DNA MER1_type 15 207 -2 325 203 31 0 chr12 111777749 111777813 -32008642 - MER3 DNA MER1_type -106 103 38 * 202 333 24 24 chr12 111777955 111778039 -32008416 + MIR SINE MIR 24 107 -155 396 317 87 28 chr12 111778575 111779033 -32007422 - L1MC/D LINE L1 -2057 5751 5267 2092 102 35 0 chr12 111779051 111779336 -32007119 - AluSq SINE Alu -18 295 1 242 256 58 12 chr12 111779912 111779998 -32006457 + MIR SINE MIR 30 119 -89 226 339 150 35 chr12 111780134 111780388 -32006067 + L2 LINE L2 176 458 -2856 454 265 107 92 chr12 111780830 111781252 -32005203 + MLT1J LTR MaLR 2 429 -82 297 0 0 0 chr12 111781707 111781740 -32004715 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 182 293 0 147 chr12 111781952 111782102 -32004353 + L2 LINE L2 1618 1745 -1569 2670 230 91 28 chr12 111782120 111783191 -32003264 + L1ME2 LINE L1 4922 6063 -101 1288 131 61 0 chr12 111783192 111783406 -32003049 - THE1C LTR MaLR 0 375 149 2011 117 52 0 chr12 111783978 111784268 -32002187 + AluSx SINE Alu 1 305 -7 1615 239 128 41 chr12 111784294 111784582 -32001873 + L1M3 LINE L1 4323 4585 -1595 186 43 0 0 chr12 111784582 111784605 -32001850 + (TG)n Simple_repeat Simple_repeat 1 23 0 1615 239 128 41 chr12 111784605 111785337 -32001118 + L1M3 LINE L1 4585 5448 -732 414 253 42 83 chr12 111785746 111786011 -32000444 + HsTC2 DNA Tc2 31 284 -1614 965 283 27 3 chr12 111786048 111786345 -32000110 + HsTC2 DNA Tc2 522 825 -1073 748 273 71 4 chr12 111786367 111786605 -31999850 + MIR SINE MIR 5 258 -4 1041 235 80 10 chr12 111786777 111787110 -31999345 - L1ME3A LINE L1 -238 5932 5574 22 0 0 0 chr12 111788264 111788286 -31998169 + AT_rich Low_complexity Low_complexity 1 22 0 665 269 6 22 chr12 111788292 111788474 -31997981 - L1ME1 LINE L1 -5 6161 5983 267 200 0 0 chr12 111788966 111789021 -31997434 + MER4-int LTR ERV1 1108 1162 -5436 237 250 0 0 chr12 111789023 111789099 -31997356 + (TG)n Simple_repeat Simple_repeat 2 77 0 245 333 26 8 chr12 111889875 111889992 -31896463 + L3 LINE CR1 1208 1326 -251 263 324 28 56 chr12 111890016 111890195 -31896260 + Charlie8 DNA MER1_type 1 174 -2243 347 274 44 44 chr12 111890427 111890562 -31895893 + Charlie8 DNA MER1_type 154 288 -2129 336 319 68 39 chr12 111890613 111890820 -31895635 + L3 LINE CR1 1340 1552 -25 344 326 94 6 chr12 111891408 111891589 -31894866 - L3b LINE CR1 -208 1375 1179 2235 115 0 0 chr12 111892297 111892601 -31893854 - AluSq SINE Alu -9 304 1 494 234 158 68 chr12 111893301 111893523 -31892932 + MLT1H LTR MaLR 67 308 -241 337 283 53 35 chr12 111893595 111893708 -31892747 + MLT1H LTR MaLR 435 549 0 232 258 62 31 chr12 111893803 111893931 -31892524 - L1ME4a LINE L1 -2 6119 5988 244 206 113 62 chr12 111894217 111894314 -31892141 + L1P5 LINE L1 5352 5453 -701 627 234 54 6 chr12 111894900 111895067 -31891388 - LTR16A1 LTR ERVL -23 434 260 199 284 69 10 chr12 111896117 111896219 -31890236 + L2 LINE L2 2800 2907 -407 466 223 102 36 chr12 111896780 111896946 -31889509 - MIR SINE MIR 0 262 86 444 322 73 19 chr12 111897557 111897794 -31888661 + MIR SINE MIR 3 252 -10 351 275 56 39 chr12 111898339 111898517 -31887938 - L1ME4a LINE L1 -4 6117 5937 366 250 160 21 chr12 111900012 111900200 -31886255 + MIR SINE MIR 49 262 0 1205 130 77 5 chr12 111901676 111901884 -31884571 - AluSc SINE Alu 0 309 87 447 340 93 7 chr12 111901965 111902182 -31884273 + MIR SINE MIR 15 246 -16 187 211 26 0 chr12 111902546 111902584 -31883871 - L2 LINE L2 -20 3293 3255 2411 171 0 47 chr12 111902915 111903360 -31883095 - MSTB LTR MaLR 0 426 3 476 294 15 40 chr12 111903417 111903618 -31882837 + MIR SINE MIR 64 259 -3 235 143 31 174 chr12 111903978 111904039 -31882416 + MER112 DNA MER1_type 1 44 -216 198 0 0 0 chr12 111904039 111904061 -31882394 + (TG)n Simple_repeat Simple_repeat 2 23 0 235 143 31 174 chr12 111904061 111904097 -31882358 + MER112 DNA MER1_type 44 84 -176 7992 36 0 0 chr12 111904121 111905809 -31880646 + L1PA4 LINE L1 4465 6153 -2 2792 49 3 6 chr12 111905968 111906293 -31880162 + L1PA6 LINE L1 5823 6146 -8 809 179 85 22 chr12 111906394 111906618 -31879837 - L1MC3 LINE L1 0 7785 7548 38 22 0 0 chr12 111906745 111906790 -31879665 + AT_rich Low_complexity Low_complexity 1 45 0 2411 130 12 3 chr12 111906887 111907232 -31879223 - L1PB4 LINE L1 -13 6143 5796 27 0 0 0 chr12 111907242 111907269 -31879186 + AT_rich Low_complexity Low_complexity 1 27 0 2450 48 0 3 chr12 111907317 111907612 -31878843 + AluY SINE Alu 1 294 -17 740 170 38 12 chr12 111907835 111907986 -31878469 - L1ME4a LINE L1 -496 5804 5652 207 258 113 0 chr12 111907986 111908048 -31878407 - MIR SINE MIR -147 115 47 1288 290 102 25 chr12 111908099 111908709 -31877746 + L1MCc LINE L1 17 673 -5750 1862 205 68 25 chr12 111908770 111909213 -31877242 - MLT1C LTR MaLR 0 467 6 1019 283 133 25 chr12 111909247 111909440 -31877015 + L1MCc LINE L1 781 952 -5471 1243 198 63 121 chr12 111909440 111909854 -31876601 + MLT1B LTR MaLR 1 390 0 1019 283 133 25 chr12 111909854 111910102 -31876353 + L1MCc LINE L1 952 1270 -5153 519 268 6 9 chr12 111911040 111911231 -31875224 + MIR SINE MIR 20 262 0 244 292 51 66 chr12 111911390 111911527 -31874928 + L2 LINE L2 3137 3271 -1 825 182 119 59 chr12 111911747 111911983 -31874472 + MIR SINE MIR 13 262 0 247 387 33 29 chr12 111912122 111912365 -31874090 + MIR SINE MIR 1 244 -18 1628 224 55 50 chr12 111913654 111914091 -31872364 - MLT1H LTR MaLR -110 439 1 398 309 68 23 chr12 111914444 111914664 -31871791 + L2 LINE L2 3043 3272 0 217 339 61 28 chr12 111914703 111914883 -31871572 - L2 LINE L2 -263 3009 2824 277 222 0 14 chr12 111914998 111915070 -31871385 + MIR SINE MIR 86 156 -106 830 245 79 28 chr12 111915073 111915144 -31871311 - MIR SINE MIR -35 227 161 207 100 0 0 chr12 111915144 111915174 -31871281 + (TTA)n Simple_repeat Simple_repeat 3 32 0 830 245 79 28 chr12 111915174 111915318 -31871137 - MIR SINE MIR -101 161 1 389 184 46 55 chr12 111915334 111915443 -31871012 + MIR SINE MIR 155 262 0 797 178 0 0 chr12 111915742 111915888 -31870567 - MLT1B-int LTR MaLR -1224 147 2 2125 155 16 39 chr12 111915888 111916269 -31870186 - MLT1B LTR MaLR -18 372 1 2082 135 7 0 chr12 111916305 111916593 -31869862 + AluSx SINE Alu 1 290 -22 369 0 0 0 chr12 111916608 111916649 -31869806 + (GA)n Simple_repeat Simple_repeat 2 42 0 334 339 40 8 chr12 111917533 111917657 -31868798 + MIR SINE MIR 16 143 -65 212 294 152 22 chr12 111917732 111917824 -31868631 + MIR SINE MIR 28 131 -131 254 154 0 19 chr12 111917831 111917883 -31868572 - L2 LINE L2 0 3313 3263 239 278 63 48 chr12 111917914 111918040 -31868415 + MIR SINE MIR 125 252 -10 265 333 0 0 chr12 111918427 111918505 -31867950 + (CA)n Simple_repeat Simple_repeat 2 79 0 598 189 81 14 chr12 111918690 111918838 -31867617 - MER103 DNA DNA -1 165 8 271 292 39 45 chr12 111919477 111919634 -31866821 - MER5A DNA MER1_type -3 175 25 258 322 42 35 chr12 111919685 111919828 -31866627 + L2 LINE L2 2926 3069 -203 958 236 100 24 chr12 111919971 111920352 -31866103 - L1ME4a LINE L1 -4 6117 5708 486 278 179 0 chr12 111920355 111920528 -31865927 + LTR33 LTR ERVL 1 204 -317 568 230 43 104 chr12 111920561 111920791 -31865664 + LTR33 LTR ERVL 304 519 -2 343 278 195 42 chr12 111920801 111921114 -31865341 - L1ME4a LINE L1 -416 5705 5345 231 321 12 0 chr12 111921358 111921442 -31865013 - MIR SINE MIR 0 262 178 244 321 67 72 chr12 111923491 111923882 -31862573 + MLT1K LTR MaLR 168 558 -30 2596 111 45 78 chr12 111923882 111924331 -31862124 + Tigger2a DNA MER2_type 1 434 0 244 321 67 72 chr12 111924331 111924344 -31862111 + MLT1K LTR MaLR 558 570 -18 602 220 67 13 chr12 111924405 111924555 -31861900 - MIR SINE MIR -34 228 71 235 335 34 67 chr12 111924553 111924762 -31861693 - L2 LINE L2 -1340 1974 1773 * 595 244 12 18 chr12 111924784 111924948 -31861507 - MLT1L LTR MaLR -4 611 449 284 257 0 62 chr12 111924950 111925122 -31861333 - L1MEd LINE L1 -4862 1257 1177 214 367 102 72 chr12 111925692 111926122 -31860333 - L2 LINE L2 -23 3249 2807 488 225 18 9 chr12 111926214 111926325 -31860130 - MER5A DNA MER1_type -77 112 1 429 319 139 47 chr12 111927230 111927703 -31858752 + L2 LINE L2 2337 2853 -461 297 290 37 26 chr12 111927897 111928147 -31858308 - L1P5 LINE L1 -693 5463 5208 212 326 38 61 chr12 111928188 111928320 -31858135 - MIR3 SINE MIR -73 135 7 425 306 8 0 chr12 111928602 111928723 -31857732 - MER117 DNA MER1_type -5 192 71 2355 118 35 32 chr12 111928883 111929257 -31857198 + THE1C LTR MaLR 1 375 0 511 317 120 61 chr12 111929436 111930228 -31856227 + L1MEc LINE L1 1149 1987 -4409 272 172 7 172 chr12 111930326 111930427 -31856028 + L1ME4a LINE L1 5991 6061 -60 2020 149 0 13 chr12 111930427 111930742 -31855713 - AluSx SINE Alu -1 311 1 272 172 7 172 chr12 111930742 111930791 -31855664 + L1ME4a LINE L1 6061 6116 -5 25 0 0 0 chr12 111930792 111930817 -31855638 + AT_rich Low_complexity Low_complexity 1 25 0 208 404 11 0 chr12 111930851 111930945 -31855510 + L3 LINE CR1 1475 1569 -8 222 308 51 13 chr12 111931265 111931343 -31855112 + MIR SINE MIR 47 127 -135 298 327 43 53 chr12 111931902 111932110 -31854345 - L3 LINE CR1 -50 1527 1322 389 294 0 24 chr12 111932112 111932238 -31854217 + MER94 DNA DNA 1 123 -11 1138 210 192 93 chr12 111932497 111932805 -31853650 - MLT1F1 LTR MaLR -1 566 290 2047 175 5 49 chr12 111932805 111933211 -31853244 - MLT1B LTR MaLR 0 390 3 1138 210 192 93 chr12 111933211 111933417 -31853038 - MLT1F1 LTR MaLR -277 290 1 24 0 0 29 chr12 111933848 111933868 -31852587 + AT_rich Low_complexity Low_complexity 1 21 -13 860 174 0 36 chr12 111933868 111934006 -31852449 + FLAM_C SINE Alu 1 133 0 24 0 0 29 chr12 111934006 111934020 -31852435 + AT_rich Low_complexity Low_complexity 21 34 0 1096 199 0 39 chr12 111934028 111934259 -31852196 + AluJo SINE Alu 87 308 -4 21 57 0 0 chr12 111935046 111935081 -31851374 + AT_rich Low_complexity Low_complexity 1 35 0 16313 122 35 8 chr12 111935119 111937474 -31848981 + Tigger1 DNA MER2_type 1 2417 -1 199 295 143 45 chr12 111937838 111937950 -31848505 + L2 LINE L2 3121 3243 -29 669 283 66 18 chr12 111938347 111938573 -31847882 + MIR SINE MIR 20 256 -6 344 275 133 0 chr12 111939184 111939304 -31847151 + MIR SINE MIR 53 188 -74 13110 152 111 18 chr12 111939320 111941650 -31844805 + L1MA3 LINE L1 3361 5472 -2252 4297 31 6 4 chr12 111941650 111942133 -31844322 + SVA Other Other 902 1385 -1 13110 152 111 18 chr12 111942133 111943798 -31842657 + L1MA3 LINE L1 5472 7724 0 974 193 117 21 chr12 111943838 111944077 -31842378 + MIR SINE MIR 1 262 0 297 51 0 0 chr12 111944839 111944878 -31841577 + (A)n Simple_repeat Simple_repeat 1 39 0 276 278 11 17 chr12 111945080 111945260 -31841195 + (TA)n Simple_repeat Simple_repeat 2 180 0 419 329 116 9 chr12 111945610 111945820 -31840635 - MIR SINE MIR -6 256 19 2611 46 20 0 chr12 111945820 111946125 -31840330 - L1PA7 LINE L1 0 6154 5844 419 329 116 9 chr12 111946125 111946139 -31840316 - MIR SINE MIR -243 19 8 859 259 114 69 chr12 111946172 111946336 -31840119 - L2 LINE L2 0 3313 3158 7347 125 58 12 chr12 111946336 111947513 -31838942 - Tigger3b DNA MER2_type 0 1231 1 859 259 114 69 chr12 111947513 111947785 -31838670 - L2 LINE L2 -155 3158 2857 525 268 8 0 chr12 111947787 111947910 -31838545 + MER5A DNA MER1_type 3 126 -63 342 115 0 0 chr12 111947912 111947964 -31838491 + (TG)n Simple_repeat Simple_repeat 2 53 0 932 207 36 0 chr12 111947964 111948157 -31838298 - L1MD3 LINE L1 -8 7987 7788 283 258 32 0 chr12 111948157 111948219 -31838236 + MER5A DNA MER1_type 125 188 -1 394 209 52 52 chr12 111948220 111948354 -31838101 - L2 LINE L2 -449 2865 2732 * 626 239 102 75 chr12 111948340 111948633 -31837822 + L2 LINE L2 3008 3308 -5 360 262 16 115 chr12 111948651 111948842 -31837613 - L2 LINE L2 -579 2735 2564 457 280 30 0 chr12 111949301 111949433 -31837022 + MIR SINE MIR 25 160 -102 214 310 0 0 chr12 111951405 111951463 -31834992 - MIR SINE MIR -62 146 89 22 0 0 0 chr12 111951555 111951577 -31834878 + AT_rich Low_complexity Low_complexity 1 22 0 1478 167 56 52 chr12 111951577 111951865 -31834590 - AluJo SINE Alu -23 289 1 202 328 75 63 chr12 111951967 111952220 -31834235 - L2 LINE L2 0 3313 3058 217 302 47 35 chr12 111952777 111952863 -31833592 + MIR3 SINE MIR 112 198 -10 2459 271 53 22 chr12 111952867 111953044 -31833411 + L1MEc LINE L1 36 206 -6190 2252 137 60 20 chr12 111953044 111953394 -31833061 + THE1B LTR MaLR 1 364 0 2459 271 53 22 chr12 111953394 111954408 -31832047 + L1MEc LINE L1 206 1625 -4771 649 153 105 0 chr12 111954430 111954566 -31831889 + L1MB8 LINE L1 5790 5945 -256 1367 163 15 56 chr12 111954627 111954897 -31831558 + L1MB8 LINE L1 5911 6169 -9 748 228 31 26 chr12 111954899 111955092 -31831363 + L1MEc LINE L1 1622 1815 -4581 258 250 50 10 chr12 111955088 111955188 -31831267 - L1ME LINE L1 -253 5868 5765 * 288 284 34 0 chr12 111955193 111955281 -31831174 - L2 LINE L2 -1732 1582 1492 2370 227 22 4 chr12 111955591 111956125 -31830330 + L1MD3 LINE L1 7428 7971 -24 1183 223 13 13 chr12 111956555 111956779 -31829676 - MER58A DNA MER1_type 0 224 1 270 222 0 0 chr12 111957523 111957577 -31828878 + MER113 DNA MER1_type? 1 54 -467 2112 104 11 0 chr12 111957649 111957927 -31828528 + AluSq SINE Alu 1 281 -32 543 267 50 42 chr12 111958524 111958786 -31827669 - MLT1J LTR MaLR -19 492 229 818 161 0 0 chr12 111959101 111959219 -31827236 + FLAM_A SINE Alu 3 120 -13 26 74 0 0 chr12 111959225 111959279 -31827176 + AT_rich Low_complexity Low_complexity 1 54 0 1067 175 31 57 chr12 111959396 111959458 -31826997 + MER58A DNA MER1_type 2 64 -2356 2092 135 0 7 chr12 111959458 111959761 -31826694 - AluSg SINE Alu -9 301 1 1067 175 31 57 chr12 111959761 111959927 -31826528 + MER58A DNA MER1_type 64 224 0 192 71 0 0 chr12 111960371 111960393 -31826062 + (A)n Simple_repeat Simple_repeat 1 23 0 2030 119 0 4 chr12 111960393 111960670 -31825785 - AluSx SINE Alu -36 276 1 347 275 144 19 chr12 111961341 111961501 -31824954 - MIR SINE MIR -52 210 31 564 283 87 18 chr12 111961501 111961720 -31824735 + MLT1L LTR MaLR 372 605 -10 334 231 30 6 chr12 111962227 111962396 -31824059 + GA-rich Low_complexity Low_complexity 1 173 0 281 375 10 0 chr12 111962431 111962535 -31823920 + MIR SINE MIR 6 110 -152 578 178 22 128 chr12 111962696 111962758 -31823697 + MIR SINE MIR 101 168 -94 2105 128 7 0 chr12 111962758 111963062 -31823393 - AluSx SINE Alu -6 306 1 578 178 22 128 chr12 111963062 111963179 -31823276 + MIR SINE MIR 168 261 -1 463 246 17 8 chr12 111963181 111963299 -31823156 - MIR SINE MIR -124 138 20 2479 115 19 25 chr12 111963696 111964062 -31822393 - THE1B LTR MaLR 0 364 1 509 336 53 25 chr12 111964279 111964523 -31821932 + MIR SINE MIR 12 262 0 1087 266 52 15 chr12 111964999 111965395 -31821060 + LTR16A1 LTR ERVL 72 457 0 3169 164 122 17 chr12 111965457 111966115 -31820340 - LTR8A LTR ERV1 0 727 1 1951 156 112 43 chr12 111966485 111966922 -31819533 - LTR10A LTR ERV1 -61 548 82 1224 129 74 10 chr12 111967354 111967556 -31818899 + MER20 DNA MER1_type 1 215 -4 252 355 44 39 chr12 111968156 111968202 -31818253 + MIR SINE MIR 34 78 -184 1030 184 50 10 chr12 111968202 111968403 -31818052 - MER3 DNA MER1_type 0 209 1 252 355 44 39 chr12 111968403 111968559 -31817896 + MIR SINE MIR 78 237 -25 318 148 19 0 chr12 111969499 111969553 -31816902 - L2 LINE L2 -76 3237 3183 307 264 67 8 chr12 111970104 111970234 -31816221 - MIR SINE MIR -49 213 70 226 100 0 0 chr12 111970398 111970428 -31816027 - MLT2B2 LTR ERVL 0 520 491 6705 130 70 18 chr12 111970430 111970514 -31815941 + Tigger3b DNA MER2_type 24 102 -2926 6552 66 2 18 chr12 111970514 111971306 -31815149 - LTR17 LTR ERV1 0 780 1 6705 130 70 18 chr12 111971306 111972370 -31814085 + Tigger3b DNA MER2_type 102 1231 0 1572 182 161 3 chr12 111972375 111972699 -31813756 - MLT2B2 LTR ERVL -50 465 91 234 62 0 0 chr12 111973243 111973275 -31813180 + (ATG)n Simple_repeat Simple_repeat 2 33 0 397 223 55 19 chr12 111973406 111973546 -31812909 + MLT1L LTR MaLR 148 305 -283 221 279 0 35 chr12 111974480 111974560 -31811895 + MIR SINE MIR 90 147 -61 490 279 91 9 chr12 111974622 111974841 -31811614 + MIR SINE MIR 20 256 -6 339 379 0 0 chr12 111974823 111974926 -31811529 - L2 LINE L2 -8 3264 3162 * 445 376 36 20 chr12 111975678 111975928 -31810527 + L2 LINE L2 2543 2796 -518 641 234 85 0 chr12 111976007 111976148 -31810307 + MLT1L LTR MaLR 126 278 -337 306 319 100 19 chr12 111976192 111976238 -31810217 + MLT1L LTR MaLR 354 395 -220 592 239 9 0 chr12 111976238 111976351 -31810104 - MER81 DNA DNA 0 114 1 306 319 100 19 chr12 111976351 111976464 -31809991 + MLT1L LTR MaLR 395 526 -89 266 319 59 30 chr12 111976811 111976946 -31809509 + L2 LINE L2 3132 3270 -2 1805 75 0 38 chr12 111977219 111977486 -31808969 + L1MA1 LINE L1 6046 6302 0 527 286 134 41 chr12 111977741 111978084 -31808371 + MLT1J2 LTR MaLR 46 420 -30 381 286 85 11 chr12 111978271 111978504 -31807951 - MLT1L LTR MaLR -50 565 231 204 289 19 0 chr12 111978946 111978998 -31807457 + MIR3 SINE MIR 147 199 -9 186 43 0 0 chr12 111978999 111979022 -31807433 + (TC)n Simple_repeat Simple_repeat 2 24 0 1122 148 22 6 chr12 111980310 111980493 -31805962 - MER5A DNA MER1_type 0 189 4 379 276 52 0 chr12 111980796 111980912 -31805543 + MIR SINE MIR 37 158 -104 260 312 123 47 chr12 111980941 111981147 -31805308 + L2 LINE L2 2353 2587 -727 225 0 0 0 chr12 111981147 111981172 -31805283 + (TCTCC)n Simple_repeat Simple_repeat 1 25 0 260 312 123 47 chr12 111981172 111981241 -31805214 + L2 LINE L2 2587 2649 -665 269 314 53 68 chr12 111981241 111981448 -31805007 + L2 LINE L2 2758 2961 -353 * 909 336 30 14 chr12 111981425 111981851 -31804604 + L2 LINE L2 2879 3311 -2 790 223 80 40 chr12 111982903 111983216 -31803239 - LTR16A1 LTR ERVL -4 453 78 570 251 11 56 chr12 111983250 111983429 -31803026 - MLT1I LTR MaLR -238 171 1 2154 114 3 3 chr12 111983706 111984003 -31802452 + AluSx SINE Alu 4 300 -12 21 0 0 0 chr12 111984235 111984256 -31802199 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 111984859 111984890 -31801565 + AT_rich Low_complexity Low_complexity 1 31 0 389 186 0 12 chr12 111985124 111985210 -31801245 + GA-rich Low_complexity Low_complexity 4 88 0 206 345 17 0 chr12 111985770 111985828 -31800627 - L2 LINE L2 -5 3267 3209 248 245 0 0 chr12 111985910 111985963 -31800492 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 506 286 40 8 chr12 111986039 111986165 -31800290 - L2 LINE L2 -14 3258 3129 28 0 0 0 chr12 111987048 111987076 -31799379 + AT_rich Low_complexity Low_complexity 1 28 0 476 276 182 0 chr12 111987077 111987280 -31799175 - MIR SINE MIR 0 262 23 383 234 183 51 chr12 111987532 111987707 -31798748 + MIR SINE MIR 5 202 -60 1329 213 105 70 chr12 111989145 111989733 -31796722 - L1MC5 LINE L1 -440 7521 6913 524 196 21 0 chr12 111989875 111989972 -31796483 - MER58A DNA MER1_type 0 128 30 260 204 0 37 chr12 111990077 111990131 -31796324 + MER112 DNA MER1_type 1 52 -208 260 285 89 8 chr12 111990141 111990264 -31796191 + MER112 DNA MER1_type 96 228 -32 380 222 83 42 chr12 111990539 111990683 -31795772 - MER113 DNA MER1_type? -367 154 5 184 304 13 63 chr12 111990770 111990849 -31795606 + L2 LINE L2 3198 3272 0 431 164 46 13 chr12 111990906 111991058 -31795397 + (TGGA)n Simple_repeat Simple_repeat 3 159 0 637 191 107 0 chr12 111991946 111992077 -31794378 + MIR SINE MIR 107 251 -11 396 40 0 0 chr12 111992402 111992452 -31794003 + (TG)n Simple_repeat Simple_repeat 2 51 0 1653 116 64 169 chr12 111993119 111993526 -31792929 + THE1B LTR MaLR 1 364 0 420 306 36 71 chr12 111993554 111993957 -31792498 - L2 LINE L2 -4 3309 2876 26 0 0 0 chr12 111993971 111993997 -31792458 + AT_rich Low_complexity Low_complexity 1 26 0 256 239 9 80 chr12 111994194 111994307 -31792148 + MER5B DNA MER1_type 5 109 -69 180 276 92 51 chr12 111995521 111995619 -31790836 - MIR SINE MIR -12 250 149 * 257 318 20 34 chr12 111995596 111995744 -31790711 + MIR SINE MIR 109 254 -8 402 312 16 0 chr12 111995779 111995904 -31790551 - MIR SINE MIR -105 157 31 2242 194 89 4 chr12 111996405 111996863 -31789592 - MLT1D LTR MaLR -8 497 1 217 246 16 0 chr12 111996869 111996930 -31789525 - L2 LINE L2 -4 3268 3207 485 292 64 9 chr12 111997057 111997276 -31789179 - MIR SINE MIR -21 241 11 2636 113 3 3 chr12 111998094 111998458 -31787997 + THE1B LTR MaLR 1 364 0 626 298 34 4 chr12 111998534 111998761 -31787694 - MIR SINE MIR -4 258 27 30 27 0 0 chr12 111999045 111999082 -31787373 + AT_rich Low_complexity Low_complexity 1 37 0 376 254 34 25 chr12 111999097 111999215 -31787240 - L1ME1 LINE L1 -52 6114 5996 264 253 126 0 chr12 111999322 111999409 -31787046 - LTR10A LTR ERV1 -511 98 1 453 132 0 53 chr12 112000831 112000907 -31785548 - AluS SINE Alu -240 73 2 317 370 17 0 chr12 112001038 112001157 -31785298 - L2 LINE L2 -5 3308 3188 26 0 0 0 chr12 112001404 112001430 -31785025 + AT_rich Low_complexity Low_complexity 1 26 0 194 312 32 43 chr12 112001694 112001787 -31784668 - MER5B DNA MER1_type -1 177 86 1872 151 7 13 chr12 112001800 112002099 -31784356 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 112002109 112002130 -31784325 + AT_rich Low_complexity Low_complexity 1 21 0 2346 92 0 0 chr12 112002130 112002433 -31784022 - AluSg SINE Alu -7 303 1 182 367 17 25 chr12 112003542 112003662 -31782793 + MIR SINE MIR 32 150 -112 414 0 0 0 chr12 112004045 112004091 -31782364 + (TG)n Simple_repeat Simple_repeat 1 46 0 2122 100 0 4 chr12 112004091 112004372 -31782083 - AluSq SINE Alu -33 280 1 271 294 96 7 chr12 112004382 112004528 -31781927 + L3b LINE CR1 1303 1461 -122 3564 134 15 31 chr12 112004589 112005047 -31781408 + MER6A DNA MER2_type 1 448 -417 2175 125 0 13 chr12 112005047 112005350 -31781105 - AluSx SINE Alu -13 299 1 3564 134 15 31 chr12 112005350 112005503 -31780952 + MER6A DNA MER2_type 448 602 -3 195 294 11 33 chr12 112006003 112006095 -31780360 - L2 LINE L2 -4 3268 3179 21 36 0 0 chr12 112006167 112006195 -31780260 + AT_rich Low_complexity Low_complexity 1 28 0 790 250 59 69 chr12 112006224 112006517 -31779938 + L2 LINE L2 2860 3149 -164 2029 96 0 96 chr12 112006517 112006849 -31779606 - AluSx SINE Alu -12 300 1 790 250 59 69 chr12 112006849 112006959 -31779496 + L2 LINE L2 3149 3259 -54 280 244 37 0 chr12 112007162 112007244 -31779211 - MIR SINE MIR -48 214 130 2274 99 0 0 chr12 112008043 112008359 -31778096 + AluSg SINE Alu 1 316 0 16846 154 27 22 chr12 112008419 112008688 -31777767 - L1MA2 LINE L1 0 7723 7457 2195 169 67 5 chr12 112008688 112009091 -31777364 + MSTA LTR MaLR 1 428 0 16846 154 27 22 chr12 112009091 112010825 -31775630 - L1MA2 LINE L1 -266 7457 5733 2075 97 4 7 chr12 112010825 112011137 -31775318 - AluSx SINE Alu 0 316 6 16846 154 27 22 chr12 112011137 112013794 -31772661 - L1MA2 LINE L1 -1990 5733 3033 2858 25 0 0 chr12 112013794 112014112 -31772343 - AluYb8 SINE Alu 0 318 1 16846 154 27 22 chr12 112014112 112014504 -31771951 - L1MA2 LINE L1 -4690 3033 2644 430 291 70 6 chr12 112015069 112015241 -31771214 - MIR SINE MIR -55 207 25 24 0 0 0 chr12 112015684 112015708 -31770747 + AT_rich Low_complexity Low_complexity 1 24 0 2312 111 0 0 chr12 112015816 112016113 -31770342 + AluSx SINE Alu 1 297 -15 318 272 19 10 chr12 112016388 112016491 -31769964 + MIR SINE MIR 41 144 -118 903 135 0 8 chr12 112016847 112016980 -31769475 - FLAM_C SINE Alu -1 132 1 534 246 51 42 chr12 112017175 112017390 -31769065 - MIR SINE MIR -14 248 32 389 325 24 12 chr12 112018069 112018238 -31768217 - MIR3 SINE MIR -8 200 30 434 252 84 14 chr12 112019641 112019784 -31766671 - LTR33 LTR ERVL -348 173 21 2390 98 0 0 chr12 112019879 112020185 -31766270 + AluSc SINE Alu 1 306 -3 287 224 90 0 chr12 112020238 112020305 -31766150 + Tigger7 DNA MER2_type 8 80 -470 * 1971 133 94 55 chr12 112020292 112020675 -31765780 + Tigger7 DNA MER2_type 2184 2581 -6 319 125 28 14 chr12 112020727 112020799 -31765656 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 553 261 153 0 chr12 112020824 112021027 -31765428 + MIR SINE MIR 4 237 -25 2247 126 0 0 chr12 112022549 112022851 -31763604 + AluSq SINE Alu 1 302 -11 1634 177 81 20 chr12 112023617 112023962 -31762493 + L1MD2 LINE L1 5744 6109 -250 810 121 15 23 chr12 112023966 112024098 -31762357 + FLAM_C SINE Alu 1 131 -2 23 33 0 0 chr12 112026097 112026127 -31760328 + AT_rich Low_complexity Low_complexity 1 30 0 33417 105 12 45 chr12 112027494 112033885 -31752570 - L1PA8 LINE L1 -1 6171 3 319 361 84 7 chr12 112033980 112034135 -31752320 + MIR SINE MIR 7 173 -89 2231 149 60 60 chr12 112034466 112034969 -31751486 + MLT1D LTR MaLR 3 505 0 2221 98 0 10 chr12 112035005 112035302 -31751153 + AluSg SINE Alu 1 294 -16 2162 109 17 7 chr12 112035312 112035605 -31750850 + AluSq SINE Alu 1 296 -17 245 151 19 0 chr12 112036650 112036703 -31749752 + GA-rich Low_complexity Low_complexity 1 54 0 297 0 0 0 chr12 112036794 112036827 -31749628 + (CA)n Simple_repeat Simple_repeat 1 33 0 514 315 9 0 chr12 112037513 112037699 -31748756 - L1MA10 LINE L1 0 6334 5985 5252 237 109 51 chr12 112037700 112037783 -31748672 - L1MEc LINE L1 -4268 2128 2051 1468 65 0 0 chr12 112037783 112037967 -31748488 - L1PA7 LINE L1 -2 6152 5969 5252 237 109 51 chr12 112037967 112038290 -31748165 - L1MEc LINE L1 -4345 2051 1748 1705 174 50 7 chr12 112038290 112038468 -31747987 - AluJb SINE Alu 0 312 114 233 0 62 0 chr12 112038468 112038500 -31747955 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1705 174 50 7 chr12 112038500 112038620 -31747835 - AluJb SINE Alu -198 114 1 5252 237 109 51 chr12 112038620 112039712 -31746743 - L1MEc LINE L1 -4648 1748 484 2186 121 0 0 chr12 112039712 112040017 -31746438 - AluSx SINE Alu 0 307 3 5252 237 109 51 chr12 112040017 112040494 -31745961 - L1MEc LINE L1 -5912 484 36 194 91 30 0 chr12 112040553 112040586 -31745869 + (TA)n Simple_repeat Simple_repeat 1 34 0 549 292 54 105 chr12 112040591 112040718 -31745737 - L2 LINE L2 -13 3259 3127 680 191 34 39 chr12 112040718 112040896 -31745559 - MER104 DNA MER2_type 0 180 4 549 292 54 105 chr12 112040896 112041158 -31745297 - L2 LINE L2 -145 3127 2890 530 334 103 14 chr12 112041230 112041249 -31745206 - L2 LINE L2 -578 2736 2720 1948 172 14 14 chr12 112041249 112041597 -31744858 - MER7A DNA MER2_type 0 346 1 530 334 103 14 chr12 112041597 112041936 -31744519 - L2 LINE L2 -594 2720 2346 424 320 153 19 chr12 112042675 112043193 -31743262 - L2 LINE L2 -995 2319 1733 198 156 0 0 chr12 112043194 112043239 -31743216 + T-rich Low_complexity Low_complexity 1 45 0 180 165 266 38 chr12 112043360 112043439 -31743016 - L2 LINE L2 -3 3269 3173 * 539 225 78 26 chr12 112043409 112043439 -31743016 + MIR SINE MIR 6 33 -229 2379 92 0 0 chr12 112043439 112043732 -31742723 + AluSx SINE Alu 1 293 -19 539 225 78 26 chr12 112043732 112043892 -31742563 + MIR SINE MIR 33 206 -56 185 189 0 0 chr12 112043893 112043930 -31742525 - MIR SINE MIR 0 262 226 391 143 16 0 chr12 112043936 112043999 -31742456 - L1MEc LINE L1 -6294 102 39 520 209 237 11 chr12 112044122 112044299 -31742156 - MIR SINE MIR -44 218 2 203 290 16 16 chr12 112045169 112045231 -31741224 - MIR3 SINE MIR -5 203 142 247 225 9 108 chr12 112045757 112045868 -31740587 - MER102a DNA MER1_type 0 330 231 1485 187 7 10 chr12 112046097 112046386 -31740069 + AluJb SINE Alu 5 292 -20 769 231 79 32 chr12 112046472 112046688 -31739767 - MIR SINE MIR -5 257 32 1849 144 26 7 chr12 112046703 112047009 -31739446 - AluJb SINE Alu 0 312 1 198 346 108 22 chr12 112047110 112047295 -31739160 + MIR SINE MIR 3 203 -59 2157 104 0 0 chr12 112047410 112047708 -31738747 - AluY SINE Alu -7 304 7 499 286 26 48 chr12 112048394 112048583 -31737872 - MIR3 SINE MIR -6 202 18 314 206 65 52 chr12 112049005 112049101 -31737354 + MIR3 SINE MIR 63 159 -49 1362 164 11 15 chr12 112049347 112049610 -31736845 + AluJb SINE Alu 1 262 -50 391 297 61 33 chr12 112050022 112050234 -31736221 - L1ME2 LINE L1 -254 5910 5693 720 293 67 0 chr12 112050309 112050517 -31735938 - MLT1K LTR MaLR -109 479 258 650 241 114 6 chr12 112050567 112050725 -31735730 - MLT1K LTR MaLR -411 177 3 191 383 44 39 chr12 112050735 112050915 -31735540 + L2 LINE L2 3074 3254 -18 556 93 58 0 chr12 112051217 112051303 -31735152 + L1MB7 LINE L1 6089 6179 -5 814 249 66 0 chr12 112051324 112051565 -31734890 + L1ME3 LINE L1 5904 6160 -2 373 95 79 0 chr12 112051648 112051711 -31734744 + MADE1 DNA Mariner 13 80 0 1034 202 5 37 chr12 112051724 112051942 -31734513 + MIR SINE MIR 49 259 -3 277 303 191 17 chr12 112052440 112052618 -31733837 + L2 LINE L2 3060 3268 -4 689 175 24 137 chr12 112053260 112053412 -31733043 + MER5A DNA MER1_type 2 125 -64 2129 103 0 10 chr12 112053412 112053722 -31732733 - AluY SINE Alu -4 307 1 689 175 24 137 chr12 112053722 112053780 -31732675 + MER5A DNA MER1_type 125 188 -1 272 222 0 56 chr12 112053782 112053854 -31732601 - MIR3 SINE MIR -49 159 92 3964 121 123 161 chr12 112053855 112055127 -31731328 + pTR5 LTR ERV1 6 581 -133 185 300 115 50 chr12 112055858 112056181 -31730274 + L2 LINE L2 2540 2883 -431 244 236 169 22 chr12 112056610 112056699 -31729756 - MIR SINE MIR -21 241 140 234 193 0 0 chr12 112056699 112056756 -31729699 + (CACCAT)n Simple_repeat Simple_repeat 4 60 0 195 169 0 1 chr12 112056758 112056789 -31729666 - MIR SINE MIR -102 106 67 264 241 103 23 chr12 112057118 112057205 -31729250 + L2 LINE L2 3178 3271 -1 429 282 141 29 chr12 112057906 112058112 -31728343 + MIR SINE MIR 34 262 0 559 250 35 23 chr12 112058194 112058257 -31728198 + MER5B DNA MER1_type 1 62 -116 2380 73 0 0 chr12 112058257 112058558 -31727897 + AluY SINE Alu 1 301 -10 559 250 35 23 chr12 112058558 112058666 -31727789 + MER5B DNA MER1_type 62 174 -4 272 102 0 51 chr12 112058977 112059036 -31727419 + (T)n Simple_repeat Simple_repeat 1 56 0 394 271 42 72 chr12 112061425 112061591 -31724864 + MLT1K LTR MaLR 16 176 -412 201 175 0 0 chr12 112061681 112061721 -31724734 + A-rich Low_complexity Low_complexity 1 40 0 572 220 90 50 chr12 112061753 112061953 -31724502 + L1MC5 LINE L1 7369 7576 -385 590 209 39 23 chr12 112061978 112062107 -31724348 + FLAM_A SINE Alu 1 131 -2 25 0 0 0 chr12 112062107 112062132 -31724323 + AT_rich Low_complexity Low_complexity 1 25 0 212 167 0 0 chr12 112062243 112062279 -31724176 + GA-rich Low_complexity Low_complexity 4 39 0 2666 10 0 3 chr12 112062341 112062645 -31723810 - AluYa5 SINE Alu -8 303 1 1165 220 21 17 chr12 112063054 112063295 -31723160 + MIR SINE MIR 20 261 -1 271 316 120 8 chr12 112063413 112063546 -31722909 + MIR3 SINE MIR 48 195 -13 201 269 0 0 chr12 112063741 112063793 -31722662 + L2 LINE L2 3217 3268 -4 200 364 136 8 chr12 112064027 112064145 -31722310 - L2 LINE L2 0 3313 3181 339 337 5 26 chr12 112064164 112064372 -31722083 - MIR SINE MIR -11 251 5 461 298 63 36 chr12 112064751 112064979 -31721476 + MIR SINE MIR 23 253 -9 224 179 0 26 chr12 112065190 112065229 -31721226 - L2 LINE L2 -10 3303 3266 844 259 83 4 chr12 112065232 112065460 -31720995 + MIR SINE MIR 6 251 -11 1806 148 3 25 chr12 112065512 112065829 -31720626 + AluJo SINE Alu 1 310 -2 252 333 32 32 chr12 112065851 112065944 -31720511 - MIR3 SINE MIR -18 190 98 194 286 18 0 chr12 112066187 112066243 -31720212 - L2 LINE L2 -16 3256 3200 2243 92 0 0 chr12 112066601 112066904 -31719551 - AluSx SINE Alu -9 303 1 320 256 56 48 chr12 112067237 112067362 -31719093 + MIR SINE MIR 66 191 -71 2167 94 3 10 chr12 112067470 112067769 -31718686 + AluSx SINE Alu 1 297 -15 208 320 0 0 chr12 112068579 112068629 -31717826 + polypurine Low_complexity Low_complexity 2 51 0 210 91 0 0 chr12 112068632 112068665 -31717790 + (CCG)n Simple_repeat Simple_repeat 2 34 0 231 114 0 0 chr12 112068715 112068759 -31717696 + (CGG)n Simple_repeat Simple_repeat 3 46 0 29 78 0 0 chr12 112068863 112068927 -31717528 + GC_rich Low_complexity Low_complexity 1 64 0 208 160 10 110 chr12 112069181 112069281 -31717174 + G-rich Low_complexity Low_complexity 4 93 0 225 108 0 0 chr12 112069285 112069322 -31717133 + (GGGGA)n Simple_repeat Simple_repeat 4 40 0 487 234 119 45 chr12 112070019 112070220 -31716235 - MIR SINE MIR -34 228 13 298 215 38 13 chr12 112070231 112070310 -31716145 - MIR SINE MIR -78 130 50 232 298 9 44 chr12 112070391 112070505 -31715950 + L2 LINE L2 2942 3051 -221 203 244 0 0 chr12 112070574 112070615 -31715840 - L2 LINE L2 -8 3305 3265 29 28 0 0 chr12 112071584 112071620 -31714835 + AT_rich Low_complexity Low_complexity 1 36 0 1498 159 96 0 chr12 112071626 112071897 -31714558 + AluJo SINE Alu 1 297 -15 398 256 175 7 chr12 112072035 112072172 -31714283 + MIR SINE MIR 1 160 -102 1405 178 8 16 chr12 112072177 112072435 -31714020 + AluJb SINE Alu 1 256 -56 1809 120 0 4 chr12 112073410 112073668 -31712787 + AluSx SINE Alu 1 257 -55 231 225 0 0 chr12 112073677 112073748 -31712707 + (ATG)n Simple_repeat Simple_repeat 2 72 0 1871 112 6 26 chr12 112074387 112074699 -31711756 - AluSx SINE Alu -5 307 2 913 240 28 43 chr12 112074733 112074803 -31711652 - MIR SINE MIR -2 260 190 625 65 21 0 chr12 112074803 112074896 -31711559 - L1PB1 LINE L1 -1 6150 6056 913 240 28 43 chr12 112074896 112075079 -31711376 - MIR SINE MIR -72 190 11 399 241 116 21 chr12 112075576 112075714 -31710741 + MIR SINE MIR 37 189 -73 2100 244 100 21 chr12 112075714 112076424 -31710031 + L2 LINE L2 2362 3123 -190 2196 96 3 0 chr12 112076743 112077036 -31709419 + AluSx SINE Alu 1 294 -18 1786 141 7 20 chr12 112077471 112077777 -31708678 - AluJb SINE Alu 0 312 11 2163 91 0 14 chr12 112077789 112078086 -31708369 - AluSc SINE Alu -16 293 1 290 273 53 69 chr12 112078225 112078602 -31707853 - L1MDa LINE L1 -4533 1596 1241 703 279 18 42 chr12 112078615 112078952 -31707503 - L1MDa LINE L1 -4896 1223 895 1837 138 44 3 chr12 112079120 112079416 -31707039 - AluSx SINE Alu -4 308 1 1569 179 53 0 chr12 112079888 112080173 -31706282 - AluJb SINE Alu -12 300 1 22 56 0 0 chr12 112080425 112080461 -31705994 + AT_rich Low_complexity Low_complexity 1 36 0 1431 194 26 0 chr12 112081087 112081392 -31705063 + AluJo SINE Alu 5 316 0 22 0 0 0 chr12 112081918 112081940 -31704515 + AT_rich Low_complexity Low_complexity 1 22 0 365 281 217 28 chr12 112082334 112082551 -31703904 - MIR SINE MIR 0 262 5 345 286 106 53 chr12 112082551 112082740 -31703715 + MIR SINE MIR 30 228 -34 1502 193 0 29 chr12 112083562 112083868 -31702587 + AluJb SINE Alu 1 297 -15 965 187 0 0 chr12 112083869 112084035 -31702420 + AluJb SINE Alu 133 298 -14 5194 122 14 63 chr12 112084120 112085002 -31701453 - Tigger1 DNA MER2_type 0 2418 1581 3140 86 18 59 chr12 112085019 112085507 -31700948 - MER41A LTR ERV1 -86 468 1 840 144 7 14 chr12 112085510 112085649 -31700806 - MER41A-int LTR ERV1 -2 5944 5807 9508 123 50 22 chr12 112085649 112086968 -31699487 - Tigger1 DNA MER2_type -825 1593 222 2309 100 7 0 chr12 112086968 112087278 -31699177 + AluSx SINE Alu 1 312 0 9508 123 50 22 chr12 112087278 112087507 -31698948 - Tigger1 DNA MER2_type -2196 222 1 3097 194 21 42 chr12 112087633 112088101 -31698354 - MER82 DNA MER2_type -1 652 201 1890 120 14 0 chr12 112088101 112088392 -31698063 - AluSg SINE Alu -15 295 1 3097 194 21 42 chr12 112088392 112088589 -31697866 - MER82 DNA MER2_type -452 201 1 2094 110 10 0 chr12 112089334 112089633 -31696822 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 112089759 112089780 -31696675 + AT_rich Low_complexity Low_complexity 1 21 0 2311 81 0 0 chr12 112089896 112090194 -31696261 + AluY SINE Alu 2 299 -12 435 271 140 37 chr12 112090454 112090782 -31695673 - L1ME4a LINE L1 -201 5920 5559 381 277 122 27 chr12 112090958 112091146 -31695309 + MIR SINE MIR 21 226 -36 2193 104 0 0 chr12 112091588 112091886 -31694569 - AluSc SINE Alu -11 298 1 1159 153 0 45 chr12 112092815 112093017 -31693438 - MER46A DNA MER2_type 0 236 44 881 222 0 12 chr12 112093018 112093185 -31693270 + FAM SINE Alu 1 165 -10 1941 154 6 3 chr12 112093207 112093518 -31692937 + AluSx SINE Alu 1 312 0 262 151 132 0 chr12 112093556 112093609 -31692846 - MER46A DNA MER2_type -176 60 1 2016 232 28 34 chr12 112094070 112094165 -31692290 - MLT1F1 LTR MaLR -68 499 405 964 189 6 6 chr12 112094165 112094340 -31692115 + FAM SINE Alu 1 175 0 2016 232 28 34 chr12 112094340 112094744 -31691711 - MLT1F1 LTR MaLR -162 405 3 224 217 253 12 chr12 112094874 112094957 -31691498 - MIR3 SINE MIR -6 202 100 2275 126 0 0 chr12 112095424 112095734 -31690721 - AluSp SINE Alu -3 310 1 321 26 0 0 chr12 112097126 112097164 -31689291 + (TG)n Simple_repeat Simple_repeat 1 38 0 342 0 0 0 chr12 112097394 112097432 -31689023 + (CA)n Simple_repeat Simple_repeat 2 39 0 286 105 0 0 chr12 112098617 112098655 -31687800 - MSTA LTR MaLR 0 428 391 1208 169 24 10 chr12 112098657 112098864 -31687591 + AluJb SINE Alu 84 293 -19 2270 127 53 13 chr12 112098864 112099243 -31687212 - MSTA LTR MaLR -34 394 1 2103 85 37 4 chr12 112099323 112099595 -31686860 + AluSx SINE Alu 1 281 -31 212 357 69 79 chr12 112100089 112100366 -31686089 - L2 LINE L2 -42 3230 2957 1691 154 30 37 chr12 112100436 112100563 -31685892 + AluJo SINE Alu 1 127 -185 240 35 0 0 chr12 112100563 112100592 -31685863 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1691 154 30 37 chr12 112100592 112100762 -31685693 + AluJo SINE Alu 127 296 -16 311 218 11 23 chr12 112100820 112100907 -31685548 - L1MC5 LINE L1 -44 7917 7832 541 163 33 85 chr12 112100977 112101130 -31685325 - L1ME2 LINE L1 -108 6056 5912 1125 182 97 77 chr12 112101145 112101485 -31684970 - L1ME2 LINE L1 -194 5970 5624 44933 34 8 2 chr12 112101488 112107202 -31679253 + L1P2 LINE L1 6 5758 -397 936 308 84 25 chr12 112107622 112108344 -31678111 + L2 LINE L2 2548 3313 0 188 154 123 77 chr12 112108442 112108507 -31677948 + MIR SINE MIR 3 70 -192 2256 103 0 0 chr12 112108733 112109024 -31677431 + AluSx SINE Alu 1 291 -21 256 323 0 0 chr12 112109047 112109109 -31677346 - L2 LINE L2 0 3272 3211 259 186 29 0 chr12 112109732 112109802 -31676653 + L1ME4a LINE L1 6048 6119 -2 1301 195 0 0 chr12 112109995 112110210 -31676245 - MLT1A1 LTR MaLR -1 364 150 1231 114 0 0 chr12 112110210 112110377 -31676078 - AluSg/x SINE Alu -12 300 134 2597 30 0 7 chr12 112110377 112110711 -31675744 - AluYb8 SINE Alu 0 318 1 951 142 6 43 chr12 112110711 112110873 -31675582 - MLT1A1 LTR MaLR -209 156 1 323 318 189 0 chr12 112111127 112111344 -31675111 - MIR SINE MIR 0 262 5 5398 147 29 18 chr12 112111543 112111618 -31674837 + MER6 DNA MER2_type 1 74 -791 2212 110 7 3 chr12 112111618 112111926 -31674529 + AluSc SINE Alu 1 309 0 5398 147 29 18 chr12 112111926 112112705 -31673750 + MER6 DNA MER2_type 74 865 0 311 337 96 28 chr12 112113408 112113586 -31672869 - L2 LINE L2 -45 3227 3038 735 207 144 118 chr12 112113586 112113921 -31672534 - MLT1J2 LTR MaLR -2 448 66 591 274 61 26 chr12 112114329 112114571 -31671884 - MIR SINE MIR -12 250 3 315 68 27 41 chr12 112115125 112115198 -31671257 + (TTAAA)n Simple_repeat Simple_repeat 1 72 0 2295 285 54 10 chr12 112115374 112116452 -31670003 - L2 LINE L2 -1 3312 2190 733 218 107 20 chr12 112116484 112116681 -31669774 - MIR SINE MIR -47 215 2 * 913 285 49 26 chr12 112116681 112117021 -31669434 - L2 LINE L2 -1122 2192 1845 2106 131 7 0 chr12 112117021 112117326 -31669129 + AluSx SINE Alu 1 307 -5 366 216 10 72 chr12 112117380 112117477 -31668978 - MIR SINE MIR -66 196 106 301 309 198 14 chr12 112117623 112117901 -31668554 + L3 LINE CR1 1088 1416 -161 558 244 113 38 chr12 112117923 112118161 -31668294 - MIR SINE MIR -5 257 2 1520 157 54 58 chr12 112118582 112118895 -31667560 - AluJo SINE Alu 0 312 1 303 210 24 113 chr12 112119603 112119679 -31666776 - MIR SINE MIR -66 142 78 2179 96 0 0 chr12 112119679 112119984 -31666471 + AluSg SINE Alu 1 305 0 303 210 24 113 chr12 112119984 112120030 -31666425 - MIR SINE MIR -130 78 30 263 218 39 13 chr12 112120103 112120181 -31666274 - LTR67 LTR ERVL -21 536 457 569 296 40 13 chr12 112120563 112120715 -31665740 + L2 LINE L2 3117 3272 0 676 237 28 28 chr12 112120898 112121075 -31665380 + MER5B DNA MER1_type 1 177 -1 1039 147 17 82 chr12 112121758 112121989 -31664466 + MER20 DNA MER1_type 3 218 -1 216 0 0 0 chr12 112122737 112122761 -31663694 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 794 268 69 15 chr12 112122958 112123202 -31663253 - MIR SINE MIR -8 254 4 775 171 41 0 chr12 112123504 112123650 -31662805 - MER63 DNA MER1_type 0 1062 911 1493 179 101 0 chr12 112123651 112123958 -31662497 + L1MD2 LINE L1 5565 5902 -457 1346 200 89 34 chr12 112123964 112124314 -31662141 - MLT1A2 LTR MaLR -5 369 1 1267 220 122 29 chr12 112124314 112124733 -31661722 + L1MD2 LINE L1 5899 6356 -3 1047 216 138 10 chr12 112124749 112125046 -31661409 + L1ME2 LINE L1 5813 6147 -17 22 80 0 0 chr12 112125054 112125104 -31661351 + AT_rich Low_complexity Low_complexity 1 50 0 365 241 0 25 chr12 112125214 112125293 -31661162 - MER63 DNA MER1_type -229 833 757 198 226 38 19 chr12 112125298 112125351 -31661104 - MIR3 SINE MIR -54 154 101 * 199 374 0 9 chr12 112125326 112125433 -31661022 - L2 LINE L2 -1035 2279 2174 372 352 64 0 chr12 112125767 112125986 -31660469 + L2 LINE L2 2397 2629 -685 2337 99 0 3 chr12 112126077 112126380 -31660075 + AluSc SINE Alu 1 302 -7 317 135 0 0 chr12 112126564 112126616 -31659839 + U5 snRNA snRNA 1 52 -64 455 256 98 8 chr12 112126876 112127009 -31659446 + L2 LINE L2 3108 3252 -20 24 0 0 0 chr12 112127419 112127443 -31659012 + AT_rich Low_complexity Low_complexity 1 24 0 2188 73 0 0 chr12 112127964 112128225 -31658230 - AluSc SINE Alu -8 301 41 232 339 94 41 chr12 112128670 112128841 -31657614 - MIR3 SINE MIR -5 203 24 620 257 88 52 chr12 112129000 112129249 -31657206 + MIR SINE MIR 3 260 -2 5951 121 45 9 chr12 112129577 112130273 -31656182 - L1PA15 LINE L1 0 6165 5433 2220 117 0 13 chr12 112130273 112130581 -31655874 + AluSx SINE Alu 1 304 -8 5951 121 45 9 chr12 112130581 112131115 -31655340 - L1PA15 LINE L1 -732 5433 4920 239 273 23 57 chr12 112131393 112131481 -31654974 - MIR SINE MIR -120 88 2 1072 317 57 45 chr12 112132911 112133491 -31652964 - MLT1K LTR MaLR 0 588 2 307 281 132 9 chr12 112133977 112134091 -31652364 + L2 LINE L2 3186 3313 0 411 279 27 18 chr12 112134097 112134208 -31652247 - MIR SINE MIR -141 121 10 982 257 72 46 chr12 112134997 112135460 -31650995 - L2 LINE L2 -190 3123 2640 2625 114 13 16 chr12 112135467 112135843 -31650612 + THE1C LTR MaLR 1 375 0 3062 254 135 30 chr12 112136865 112138185 -31648270 - HAL1 LINE L1 -611 1896 438 1154 245 136 24 chr12 112138211 112138587 -31647868 - MLT1J2 LTR MaLR -13 437 20 354 267 121 55 chr12 112138605 112138770 -31647685 + MIR SINE MIR 87 262 0 307 279 88 59 chr12 112138925 112139061 -31647394 - L2 LINE L2 -1 3312 3173 1758 244 234 2 chr12 112139174 112139790 -31646665 + L2 LINE L2 1888 2646 -668 375 268 82 0 chr12 112139854 112139951 -31646504 + L2 LINE L2 3182 3286 -27 477 248 8 66 chr12 112140913 112141034 -31645421 - MER81 DNA DNA 0 114 1 614 282 44 69 chr12 112141206 112141525 -31644930 + LTR16A1 LTR ERVL 5 315 -142 1197 309 57 36 chr12 112141557 112142030 -31644425 + HERV16 LTR ERVL 2352 2834 -2162 1623 335 79 38 chr12 112142229 112143343 -31643112 + HERV16 LTR ERVL 3078 4237 -1417 1602 247 43 18 chr12 112143349 112143795 -31642660 + MER70A LTR ERVL 4 460 -12 1521 336 68 47 chr12 112143796 112144213 -31642242 + HERV16 LTR ERVL 4279 4686 -1078 2360 87 3 0 chr12 112144213 112144512 -31641943 + AluSp SINE Alu 1 300 -13 1521 336 68 47 chr12 112144512 112145143 -31641312 + HERV16 LTR ERVL 4686 5349 -415 1763 248 35 26 chr12 112145266 112145718 -31640737 + LTR16A1 LTR ERVL 1 456 -1 547 273 27 55 chr12 112145814 112146034 -31640421 + MLT1I LTR MaLR 59 272 -137 241 133 56 65 chr12 112146112 112146196 -31640259 + MLT1F LTR MaLR 317 542 0 383 254 55 0 chr12 112146196 112146306 -31640149 + MER103 DNA DNA 6 121 -45 185 294 43 43 chr12 112147240 112147332 -31639123 + L2 LINE L2 2550 2641 -673 426 302 93 23 chr12 112147440 112147655 -31638800 + MIR SINE MIR 30 259 -3 228 255 32 53 chr12 112148161 112148255 -31638200 + L1ME LINE L1 5795 5886 -284 824 185 43 38 chr12 112148305 112148489 -31637966 + L1MC3 LINE L1 5428 5612 -2173 5788 138 49 18 chr12 112148507 112149856 -31636599 - L1MA8 LINE L1 -3 6288 4896 9629 188 92 10 chr12 112149857 112151866 -31634589 + L1MC3 LINE L1 5593 7765 -20 252 249 149 11 chr12 112152465 112152572 -31633883 + MIR SINE MIR 37 154 -67 446 297 43 0 chr12 112152820 112152958 -31633497 + MIR3 SINE MIR 34 177 -31 182 167 0 0 chr12 112153173 112153203 -31633252 + MIR3 SINE MIR 165 194 -14 193 343 27 0 chr12 112153419 112153492 -31632963 - L2 LINE L2 -5 3308 3234 * 323 338 86 45 chr12 112153487 112153709 -31632746 - L2 LINE L2 -558 2756 2526 297 0 0 0 chr12 112154163 112154196 -31632259 + (TG)n Simple_repeat Simple_repeat 2 34 0 324 300 125 8 chr12 112154760 112154880 -31631575 + MIR SINE MIR 19 152 -110 * 647 243 53 6 chr12 112154873 112155042 -31631413 - MIR SINE MIR -84 178 2 357 264 28 0 chr12 112155094 112155200 -31631255 + MIR SINE MIR 84 192 -70 238 311 126 0 chr12 112155303 112155406 -31631049 + L2 LINE L2 3160 3275 -38 332 247 13 0 chr12 112155472 112155549 -31630906 + MIR SINE MIR 150 227 -35 191 327 131 42 chr12 112156132 112156300 -31630155 + MIR SINE MIR 11 193 -69 313 298 15 46 chr12 112156810 112156941 -31629514 + HAL1 LINE L1 215 341 -2166 11490 191 59 31 chr12 112157073 112159784 -31626671 - Charlie6 DNA MER1_type -30 3470 684 326 329 12 6 chr12 112159865 112160035 -31626420 + L1M4 LINE L1 4757 4927 -1219 533 125 144 10 chr12 112160260 112160364 -31626091 - LTR50 LTR ERVL -677 118 1 614 241 97 38 chr12 112160458 112160695 -31625760 + HAL1 LINE L1 2243 2493 -14 2819 112 0 3 chr12 112161045 112161410 -31625045 - THE1B LTR MaLR 0 364 1 216 318 99 44 chr12 112161579 112161831 -31624624 - L2 LINE L2 -191 3081 2816 285 320 32 0 chr12 112162038 112162163 -31624292 - MIR SINE MIR -25 237 109 192 333 40 30 chr12 112162669 112162768 -31623687 + L2 LINE L2 2395 2494 -820 2290 186 61 11 chr12 112162917 112163362 -31623093 + MLT1C LTR MaLR 1 467 0 195 100 0 0 chr12 112163372 112163402 -31623053 + (T)n Simple_repeat Simple_repeat 1 30 0 403 332 88 15 chr12 112163473 112163678 -31622777 - MIR SINE MIR -13 249 30 1102 226 14 0 chr12 112163717 112163925 -31622530 - MER58A DNA MER1_type -11 213 3 190 236 264 0 chr12 112164064 112164136 -31622319 - MIR SINE MIR -161 101 11 530 321 23 60 chr12 112164583 112164982 -31621473 + MLT1J LTR MaLR 124 507 -4 190 314 0 0 chr12 112165015 112165066 -31621389 + L2 LINE L2 3221 3271 -1 445 293 71 37 chr12 112165158 112165385 -31621070 - MIR SINE MIR -30 232 2 428 310 109 21 chr12 112165427 112165628 -31620827 + MIR SINE MIR 38 253 -9 405 265 57 91 chr12 112166331 112166500 -31619955 + MIR SINE MIR 28 188 -74 1516 70 5 0 chr12 112166500 112166686 -31619769 - L1PA8 LINE L1 -14 6158 5972 405 265 57 91 chr12 112166686 112166746 -31619709 + MIR SINE MIR 188 249 -13 1975 139 37 0 chr12 112166935 112167230 -31619225 - AluSq SINE Alu -7 306 1 189 308 89 53 chr12 112167246 112167415 -31619040 - L2 LINE L2 -13 3300 3126 519 220 92 21 chr12 112167626 112167767 -31618688 - MLT1J2 LTR MaLR -255 195 45 487 248 108 95 chr12 112168694 112169088 -31617367 + MLT1J LTR MaLR 25 427 -84 2305 201 27 41 chr12 112169088 112169600 -31616855 - MLT1D LTR MaLR 0 505 1 487 248 108 95 chr12 112169600 112169648 -31616807 + MLT1J LTR MaLR 427 473 -38 275 294 73 0 chr12 112169820 112169929 -31616526 + L2 LINE L2 3155 3271 -1 315 215 62 0 chr12 112170182 112170247 -31616208 - MER103 DNA DNA -86 80 12 441 283 18 0 chr12 112171202 112171315 -31615140 - MIR SINE MIR -62 146 32 391 327 26 9 chr12 112172155 112172286 -31614169 - MIR SINE MIR -73 135 3 218 224 0 20 chr12 112172317 112172366 -31614089 - L2 LINE L2 -16 3256 3209 880 256 185 33 chr12 112174531 112174921 -31611534 - MLT1K LTR MaLR -3 585 137 215 122 20 41 chr12 112175531 112175580 -31610875 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 3980 174 17 18 chr12 112175855 112176579 -31609876 + L1MB8 LINE L1 5447 6169 -9 3085 118 7 5 chr12 112176759 112177207 -31609248 - L1PB1 LINE L1 -2 6149 5701 388 263 10 20 chr12 112177284 112177383 -31609072 + MLT1K LTR MaLR 129 226 -362 842 281 41 51 chr12 112177390 112177782 -31608673 + MLT1K LTR MaLR 193 580 -8 216 324 15 0 chr12 112178567 112178635 -31607820 + L2 LINE L2 3189 3257 -15 1008 281 51 84 chr12 112178730 112179204 -31607251 - MLT1K LTR MaLR -42 546 89 241 313 24 76 chr12 112179219 112179388 -31607067 - MIR3 SINE MIR -62 146 5 25 0 0 0 chr12 112179936 112179961 -31606494 + AT_rich Low_complexity Low_complexity 1 25 0 327 242 114 40 chr12 112180538 112180687 -31605768 + MIR SINE MIR 10 169 -93 249 344 25 16 chr12 112181195 112181317 -31605138 + MIR SINE MIR 140 262 0 1999 121 7 36 chr12 112181331 112181638 -31604817 - AluSx SINE Alu -12 300 3 298 280 19 57 chr12 112182636 112182689 -31603766 + C-rich Low_complexity Low_complexity 4 57 -97 1610 182 7 108 chr12 112182689 112183095 -31603360 + MLT1A1 LTR MaLR 1 365 0 298 280 19 57 chr12 112183095 112183198 -31603257 + C-rich Low_complexity Low_complexity 57 154 0 1095 262 111 41 chr12 112183230 112184119 -31602336 + HAL1b LINE L1 369 1348 0 611 283 11 17 chr12 112184854 112185031 -31601424 - MIR SINE MIR -48 214 39 319 320 50 10 chr12 112185735 112185835 -31600620 + MER91C DNA MER1_type 1 104 -36 536 295 128 13 chr12 112185967 112186201 -31600254 - MIR SINE MIR -1 261 1 1385 175 7 2 chr12 112186223 112186520 -31599935 - MER2 DNA MER2_type 0 345 1 222 312 65 26 chr12 112186586 112186663 -31599792 + L2 LINE L2 3138 3217 -55 2289 143 37 48 chr12 112187626 112188059 -31598396 + MSTA LTR MaLR 1 428 0 1606 204 74 72 chr12 112188064 112188524 -31597931 - MLT1C LTR MaLR -2 465 5 412 308 144 8 chr12 112189387 112189599 -31596856 + MIR SINE MIR 11 262 0 609 267 108 39 chr12 112189772 112190004 -31596451 - MIR SINE MIR -8 254 7 306 234 43 11 chr12 112191094 112191188 -31595267 - MIR SINE MIR -64 198 102 598 160 193 99 chr12 112191340 112191522 -31594933 - MER21B LTR ERV1 -27 904 631 4308 132 20 3 chr12 112191551 112192211 -31594244 + MER50 LTR ERV1 52 722 -12 2743 214 22 52 chr12 112192244 112192455 -31594000 - MER21B LTR ERV1 -220 643 427 1772 158 3 7 chr12 112192455 112192747 -31593708 + AluSx SINE Alu 15 305 -7 2743 214 22 52 chr12 112192747 112193183 -31593272 - MER21B LTR ERV1 -436 427 16 422 184 18 114 chr12 112193594 112193708 -31592747 - MIR SINE MIR -158 104 2 205 340 21 11 chr12 112193724 112193818 -31592637 - L2 LINE L2 -473 2841 2747 659 253 113 18 chr12 112194265 112194494 -31591961 - MIR SINE MIR -9 253 3 281 331 57 32 chr12 112194861 112194985 -31591470 - L2 LINE L2 -2 3270 3144 2469 96 0 0 chr12 112195293 112195605 -31590850 + AluSx SINE Alu 1 312 0 291 337 92 54 chr12 112195743 112196351 -31590104 - L2 LINE L2 -665 2649 2019 426 226 226 8 chr12 112196413 112196537 -31589918 - MER5A DNA MER1_type -29 160 10 198 143 0 29 chr12 112197317 112197352 -31589103 - L3 LINE CR1 -2 1575 1542 1007 287 6 27 chr12 112198060 112198395 -31588060 + L2 LINE L2 2528 2855 -459 268 150 0 50 chr12 112198398 112198458 -31587997 - MLT2B1 LTR ERVL 0 520 464 211 215 15 31 chr12 112198469 112198534 -31587921 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 186 29 0 chr12 112198539 112198609 -31587846 + L1MC4 LINE L1 6620 6691 -1351 1148 177 20 10 chr12 112198609 112198812 -31587643 - MLT2B1 LTR ERVL -40 480 276 6952 158 10 16 chr12 112198813 112199917 -31586538 - ERVL LTR ERVL -1650 4114 3018 768 279 63 69 chr12 112199918 112200431 -31586024 + L2 LINE L2 2800 3309 -4 239 278 146 49 chr12 112200477 112200682 -31585773 - MER102b DNA MER1_type -10 331 107 658 189 0 8 chr12 112201242 112201374 -31585081 + MIR SINE MIR 132 262 0 5968 204 59 48 chr12 112201464 112203838 -31582617 + L1ME1 LINE L1 3703 6114 -52 30 27 0 0 chr12 112203853 112203890 -31582565 + AT_rich Low_complexity Low_complexity 1 37 0 626 296 35 7 chr12 112204175 112204403 -31582052 + MIR SINE MIR 27 258 -4 222 193 0 0 chr12 112204424 112204481 -31581974 + (ATG)n Simple_repeat Simple_repeat 2 58 0 676 314 75 41 chr12 112204686 112205243 -31581212 - L2 LINE L2 -467 2847 2272 462 269 26 26 chr12 112205377 112205533 -31580922 + MIR SINE MIR 103 258 -4 413 294 108 41 chr12 112205665 112205795 -31580660 + MIR SINE MIR 41 190 -72 2080 159 43 68 chr12 112205795 112206311 -31580144 + MLT1D LTR MaLR 1 503 -2 413 294 108 41 chr12 112206311 112206374 -31580081 + MIR SINE MIR 190 247 -15 272 370 50 0 chr12 112206492 112206611 -31579844 - L2 LINE L2 -46 3226 3102 26 0 0 0 chr12 112206997 112207023 -31579432 + AT_rich Low_complexity Low_complexity 1 26 0 1984 158 3 10 chr12 112207028 112207339 -31579116 + AluSx SINE Alu 1 309 -3 288 242 121 45 chr12 112207653 112207785 -31578670 - L2 LINE L2 0 3313 3172 490 275 7 7 chr12 112208233 112208371 -31578084 + MIR SINE MIR 20 157 -105 327 306 8 60 chr12 112208732 112208866 -31577589 + MIR3 SINE MIR 52 178 -30 2087 155 0 0 chr12 112209467 112209764 -31576691 - AluSx SINE Alu -15 297 1 257 284 74 32 chr12 112209776 112209871 -31576584 + L2 LINE L2 3122 3220 -52 2253 110 10 0 chr12 112210428 112210729 -31575726 + AluSx SINE Alu 1 304 -8 607 265 130 0 chr12 112210930 112211153 -31575302 + MIR SINE MIR 11 262 0 266 323 74 0 chr12 112211746 112211918 -31574537 + MIR SINE MIR 3 191 -63 316 294 0 22 chr12 112212643 112212735 -31573720 - L2 LINE L2 -4 3268 3179 223 196 0 22 chr12 112213254 112213300 -31573155 - MIR SINE MIR -201 61 17 428 284 79 8 chr12 112215002 112215129 -31571326 + MIR3 SINE MIR 6 141 -67 276 321 18 9 chr12 112215146 112215258 -31571197 + L2 LINE L2 3199 3311 -2 1014 249 69 102 chr12 112216607 112217085 -31569370 + MLT1K LTR MaLR 124 585 -3 2112 171 3 0 chr12 112218181 112218521 -31567934 - MER7A DNA MER2_type -7 339 1 419 182 166 107 chr12 112218534 112218721 -31567734 - MLT1J2 LTR MaLR -11 435 238 1015 255 19 8 chr12 112218747 112219006 -31567449 - LTR16A LTR ERVL -12 438 177 809 221 18 0 chr12 112219135 112219298 -31567157 - MER58A DNA MER1_type -35 189 24 640 244 72 6 chr12 112219309 112219489 -31566966 - MLT1J2 LTR MaLR -258 192 1 470 248 95 13 chr12 112219706 112219910 -31566545 + MIR SINE MIR 23 249 -13 1505 130 0 0 chr12 112219931 112220138 -31566317 + AluSg/x SINE Alu 76 282 -30 1872 135 21 10 chr12 112220204 112220493 -31565962 + AluJo SINE Alu 5 296 -16 258 243 0 27 chr12 112220496 112220570 -31565885 + MIR SINE MIR 79 150 -112 301 181 241 53 chr12 112220791 112220924 -31565531 - MLT1H LTR MaLR -34 515 358 277 198 12 47 chr12 112221028 112221114 -31565341 - MLT1J2 LTR MaLR -439 103 21 558 150 2 18 chr12 112221331 112221434 -31565021 - MLT1J2 LTR MaLR -267 142 48 1957 173 29 24 chr12 112222254 112222636 -31563819 - MER45B DNA AcHobo 0 1040 657 957 127 0 0 chr12 112222647 112222773 -31563682 + AluSq/x SINE Alu 8 133 -180 982 188 0 6 chr12 112222827 112223003 -31563452 - AluSg/x SINE Alu -9 301 127 363 87 0 0 chr12 112223009 112223055 -31563400 - Alu SINE Alu -257 46 1 2958 197 100 2 chr12 112223055 112223633 -31562822 - MER45B DNA AcHobo -399 641 7 510 309 22 69 chr12 112223644 112224106 -31562349 + L2 LINE L2 2313 2752 -562 481 306 118 20 chr12 112224101 112224398 -31562057 + L2 LINE L2 2988 3313 0 * 268 238 71 0 chr12 112224652 112224736 -31561719 + MER94 DNA DNA 40 129 -5 746 50 0 10 chr12 112224848 112224948 -31561507 + (TTC)n Simple_repeat Simple_repeat 3 101 0 213 114 0 0 chr12 112224948 112224978 -31561477 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 228 87 22 chr12 112225001 112225093 -31561362 - MLT1K LTR MaLR -304 284 187 295 264 157 0 chr12 112225272 112225393 -31561062 - L2 LINE L2 -217 3055 2916 482 231 15 22 chr12 112225670 112225804 -31560651 - MER112 DNA MER1_type -58 202 70 511 268 19 68 chr12 112228703 112228908 -31557547 + L2 LINE L2 3119 3313 0 3518 253 60 105 chr12 112229028 112230793 -31555662 + L1M3b LINE L1 3 1642 -4709 2168 107 3 6 chr12 112230793 112231110 -31555345 + L1PB1 LINE L1 5833 6148 -3 3518 253 60 105 chr12 112231110 112231445 -31555010 + L1M3b LINE L1 1642 1990 -4361 663 276 35 0 chr12 112231460 112231634 -31554821 - MIR SINE MIR -73 189 10 244 226 333 0 chr12 112231854 112231956 -31554499 - MIR SINE MIR -93 169 34 210 143 0 0 chr12 112232866 112232901 -31553554 + (TAA)n Simple_repeat Simple_repeat 2 36 0 456 345 17 6 chr12 112233118 112233292 -31553163 - MER91A DNA MER1_type -1 195 20 395 260 29 0 chr12 112233966 112234070 -31552385 + L2 LINE L2 3205 3311 -2 231 242 15 30 chr12 112234084 112234150 -31552305 - L2 LINE L2 -211 3061 2997 865 235 73 66 chr12 112235300 112235879 -31550576 - L2 LINE L2 -23 3290 2690 537 258 50 6 chr12 112235890 112236049 -31550406 - MIR SINE MIR -50 212 47 1218 147 84 52 chr12 112236051 112236161 -31550294 + L1MA9 LINE L1 5997 6102 -210 2135 122 0 3 chr12 112236161 112236473 -31549982 + AluSx SINE Alu 2 312 0 1218 147 84 52 chr12 112236473 112236527 -31549928 + L1MA9 LINE L1 6102 6153 -159 264 59 0 0 chr12 112236527 112236561 -31549894 + (CA)n Simple_repeat Simple_repeat 1 34 0 1218 147 84 52 chr12 112236561 112236680 -31549775 + L1MA9 LINE L1 6153 6291 -21 40 49 0 0 chr12 112236718 112236779 -31549676 + AT_rich Low_complexity Low_complexity 1 61 0 2792 232 117 33 chr12 112237182 112237435 -31549020 - L2 LINE L2 -610 2704 2474 1542 191 0 23 chr12 112237435 112237734 -31548721 + AluJo SINE Alu 1 292 -20 2792 232 117 33 chr12 112237734 112238469 -31547986 - L2 LINE L2 -840 2474 1623 2100 143 60 20 chr12 112238469 112238819 -31547636 + THE1B LTR MaLR 1 364 0 2792 232 117 33 chr12 112238819 112238864 -31547591 - L2 LINE L2 -1691 1623 1583 225 255 52 46 chr12 112239441 112239594 -31546861 + L1M3b LINE L1 2351 2504 -3846 180 0 0 0 chr12 112239887 112239907 -31546548 + (T)n Simple_repeat Simple_repeat 1 20 0 262 326 53 23 chr12 112240246 112240378 -31546077 + L2 LINE L2 2568 2703 -611 328 310 33 113 chr12 112240524 112240921 -31545534 + L2 LINE L2 2893 3257 -15 243 0 0 0 chr12 112240922 112240949 -31545506 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 197 33 33 0 chr12 112241090 112241120 -31545335 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 193 284 34 34 chr12 112242712 112242800 -31543655 - MIR SINE MIR -15 247 160 936 265 8 24 chr12 112242815 112243068 -31543387 + MIR SINE MIR 3 251 -11 277 289 26 0 chr12 112243063 112243139 -31543316 - MIR3 SINE MIR -47 161 84 * 1774 214 35 104 chr12 112243260 112243715 -31542740 + L1MC4 LINE L1 7437 7774 -221 2429 75 0 3 chr12 112243715 112244008 -31542447 + AluY SINE Alu 1 292 -19 1774 214 35 104 chr12 112244008 112244216 -31542239 + L1MC4 LINE L1 7774 7995 0 280 291 73 83 chr12 112244754 112245056 -31541399 - L2 LINE L2 0 3272 2974 3334 150 9 57 chr12 112245108 112246507 -31539948 + L1MB2 LINE L1 5532 6165 -6 2705 124 31 12 chr12 112245187 112246158 -31540297 + MSTA LTR MaLR 1 1298 -55 2182 106 0 3 chr12 112246158 112246474 -31539981 - AluSx SINE Alu 0 315 1 2705 124 31 12 chr12 112246474 112246532 -31539923 + MSTA LTR MaLR 1298 1353 0 873 198 13 114 chr12 112246829 112247066 -31539389 + MER58A DNA MER1_type 9 221 -3 989 189 29 23 chr12 112247930 112248151 -31538304 + MER20 DNA MER1_type 1 213 -6 1017 288 56 44 chr12 112248276 112248794 -31537661 - MLT1L LTR MaLR -91 524 1 236 224 0 17 chr12 112248863 112248921 -31537534 - MER5A DNA MER1_type 0 189 133 * 257 323 73 16 chr12 112248918 112249042 -31537413 + MER5A DNA MER1_type 53 183 -6 255 261 15 0 chr12 112249305 112249370 -31537085 - MIR SINE MIR -13 249 184 350 231 0 26 chr12 112249401 112249479 -31536976 + MER21B LTR ERV1 1 76 -787 22 56 0 0 chr12 112250909 112250945 -31535510 + AT_rich Low_complexity Low_complexity 1 36 0 1665 232 71 47 chr12 112252097 112252705 -31533750 + MER21B LTR ERV1 59 734 -129 448 275 58 18 chr12 112252728 112252899 -31533556 - MIR SINE MIR -69 193 16 522 250 21 14 chr12 112253014 112253181 -31533274 - MER5A DNA MER1_type -10 179 1 887 268 67 26 chr12 112253729 112254298 -31532157 + MLT1G1 LTR MaLR 4 554 -1 187 180 180 0 chr12 112254336 112254386 -31532069 + MER5C DNA MER1_type 1 59 -265 894 249 135 69 chr12 112254387 112254764 -31531691 - MER57A LTR ERV1 0 403 1 213 202 169 11 chr12 112254770 112254859 -31531596 + MER5C DNA MER1_type 75 177 -147 275 174 32 24 chr12 112255048 112255136 -31531319 - MLT1L LTR MaLR -8 607 414 892 228 21 5 chr12 112255260 112255453 -31531002 + LTR16C LTR ERVL 246 441 -50 419 297 81 6 chr12 112255801 112256018 -31530437 + MIR SINE MIR 16 247 -15 326 158 42 74 chr12 112256702 112256797 -31529658 - MER69 DNA AcHobo 0 2526 2435 1010 188 44 0 chr12 112256835 112257016 -31529439 + MLT1E LTR MaLR 403 591 -2 2960 109 21 76 chr12 112257175 112257689 -31528766 + LTR45B LTR ERV1 3 488 -1 180 339 31 0 chr12 112257987 112258052 -31528403 - L3 LINE CR1 -6 1571 1505 906 286 36 48 chr12 112258052 112258254 -31528201 + MLT1J LTR MaLR 151 349 -162 2100 145 3 0 chr12 112258254 112258557 -31527898 + AluSx SINE Alu 3 306 -6 906 286 36 48 chr12 112258557 112258711 -31527744 + MLT1J LTR MaLR 349 503 -8 1523 191 42 69 chr12 112258790 112259167 -31527288 + MLT1A2 LTR MaLR 4 370 -4 202 343 9 38 chr12 112259366 112259471 -31526984 - L3 LINE CR1 -347 1230 1129 1138 248 75 82 chr12 112259919 112260456 -31525999 + MLT1K LTR MaLR 56 588 0 203 311 0 0 chr12 112261248 112261309 -31525146 - MIR SINE MIR -118 144 84 227 372 20 0 chr12 112261486 112261634 -31524821 + (CATA)n Simple_repeat Simple_repeat 4 154 0 213 39 0 0 chr12 112261642 112261668 -31524787 + (CA)n Simple_repeat Simple_repeat 2 27 0 259 300 122 17 chr12 112262669 112262899 -31523556 + L1ME LINE L1 4780 5033 -1113 346 284 0 24 chr12 112263051 112263178 -31523277 + L1ME LINE L1 5036 5159 -987 342 146 31 10 chr12 112263442 112263538 -31522917 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 409 252 45 73 chr12 112263906 112264165 -31522290 - MIR3 SINE MIR -6 256 7 779 243 119 13 chr12 112264739 112264974 -31521481 - MIR SINE MIR 0 262 3 2118 122 3 7 chr12 112265129 112265425 -31521030 + AluSx SINE Alu 1 295 -17 235 162 0 0 chr12 112265883 112265920 -31520535 + MER3 DNA MER1_type 14 50 -159 284 257 92 0 chr12 112265967 112266076 -31520379 - MER91C DNA MER1_type -21 119 1 182 62 31 0 chr12 112266360 112266392 -31520063 + (CCA)n Simple_repeat Simple_repeat 1 33 0 506 270 32 22 chr12 112267096 112267281 -31519174 - L2 LINE L2 -229 3043 2857 430 189 63 27 chr12 112267519 112267630 -31518825 + MER53 DNA DNA 4 118 -71 335 241 13 0 chr12 112267787 112267866 -31518589 + L1ME LINE L1 5557 5636 -485 1791 177 7 3 chr12 112267984 112268289 -31518166 + AluSx SINE Alu 2 307 -5 4102 69 4 9 chr12 112268363 112268913 -31517542 - L1PB1 LINE L1 -3 6148 5602 446 337 148 28 chr12 112269570 112269997 -31516458 - L2 LINE L2 -20 3293 2816 392 304 138 9 chr12 112270031 112270248 -31516207 - MIR SINE MIR -4 258 14 2132 131 27 29 chr12 112270578 112270952 -31515503 - THE1C LTR MaLR -2 373 1 246 227 0 0 chr12 112271012 112271087 -31515368 + C-rich Low_complexity Low_complexity 3 77 0 683 214 0 6 chr12 112271111 112271284 -31515171 + C-rich Low_complexity Low_complexity 1 172 0 467 269 12 0 chr12 112271301 112271468 -31514987 + CT-rich Low_complexity Low_complexity 3 171 0 * 746 191 0 19 chr12 112271430 112271650 -31514805 + C-rich Low_complexity Low_complexity 1 215 0 241 271 43 86 chr12 112272235 112272375 -31514080 + MIR SINE MIR 16 149 -59 686 308 120 5 chr12 112272386 112272863 -31513592 + MLT1K LTR MaLR 18 572 -16 7687 161 157 30 chr12 112272903 112274460 -31511995 - MER52A LTR ERV1 0 1755 1 191 284 30 0 chr12 112274504 112274571 -31511884 - MIR SINE MIR -184 78 10 1890 131 55 30 chr12 112274738 112275066 -31511389 - THE1C LTR MaLR -37 338 3 1752 168 7 43 chr12 112275250 112275553 -31510902 + AluJo SINE Alu 1 292 -20 266 294 0 0 chr12 112276078 112276146 -31510309 + L2 LINE L2 3242 3309 -4 1753 248 60 63 chr12 112276608 112276819 -31509636 + L1MC4a LINE L1 5374 5584 -2224 2025 127 79 20 chr12 112276819 112277173 -31509282 - THE1C LTR MaLR 0 375 1 1753 248 60 63 chr12 112277173 112277815 -31508640 + L1MC4a LINE L1 5584 6224 -1584 243 174 0 0 chr12 112278065 112278111 -31508344 - LTR66 LTR ERVL -171 439 394 243 174 0 0 chr12 112278073 112278119 -31508336 + LTR66 LTR ERVL 394 439 -171 615 242 64 145 chr12 112278483 112279028 -31507427 - MLT1J LTR MaLR -2 509 9 299 192 13 26 chr12 112279118 112279196 -31507259 + MER53 DNA DNA 103 179 -10 * 324 247 12 12 chr12 112279130 112279215 -31507240 - MER53 DNA DNA -104 85 1 364 269 127 35 chr12 112279266 112279463 -31506992 + MIR SINE MIR 7 221 -41 192 233 121 52 chr12 112279725 112279841 -31506614 + MIR SINE MIR 121 244 -18 499 252 33 13 chr12 112280864 112281015 -31505440 + MIR SINE MIR 47 200 -62 517 254 0 8 chr12 112281378 112281508 -31504947 + LTR67 LTR ERVL 429 557 0 1935 190 165 32 chr12 112281686 112282239 -31504216 - MLT1E2 LTR MaLR 0 626 1 39 0 0 0 chr12 112282725 112282764 -31503691 + AT_rich Low_complexity Low_complexity 1 39 0 435 254 168 14 chr12 112283189 112283398 -31503057 + MIR SINE MIR 11 251 -11 236 332 34 39 chr12 112283494 112283636 -31502819 + MIR SINE MIR 24 165 -62 2532 111 5 22 chr12 112283659 112284029 -31502426 - THE1B LTR MaLR 0 364 1 282 236 160 7 chr12 112284029 112284257 -31502198 + LTR33 LTR ERVL 21 335 -186 2770 146 55 47 chr12 112284283 112284789 -31501666 - MER21A LTR ERV1 -6 925 416 644 288 46 46 chr12 112284791 112285076 -31501379 - MLT1K LTR MaLR -15 573 289 208 154 15 77 chr12 112285470 112285535 -31500920 + CT-rich Low_complexity Low_complexity 1 61 0 351 305 110 30 chr12 112286528 112286692 -31499763 + MIR SINE MIR 6 182 -80 188 240 20 0 chr12 112287232 112287282 -31499173 + L2 LINE L2 3263 3313 0 207 298 48 25 chr12 112287546 112287644 -31498811 + MIR SINE MIR 11 112 -96 1784 304 69 39 chr12 112287645 112289377 -31497078 + L1MEc LINE L1 37 1820 -4576 484 259 17 17 chr12 112289372 112289546 -31496909 + L1MEc LINE L1 2965 3138 -3077 * 5151 221 60 37 chr12 112289534 112290017 -31496438 + L1MEc LINE L1 3567 4037 -2184 2243 107 0 7 chr12 112290017 112290315 -31496140 + AluSx SINE Alu 1 296 -16 5151 221 60 37 chr12 112290315 112291594 -31494861 + L1MEc LINE L1 4037 5371 -850 468 149 11 0 chr12 112291598 112291685 -31494770 - MSTC LTR MaLR 0 428 341 356 266 42 49 chr12 112292957 112293100 -31493355 + MIR SINE MIR 8 149 -113 416 272 83 46 chr12 112293239 112293649 -31492806 + MLT1J2 LTR MaLR 2 450 0 431 238 81 50 chr12 112294219 112294379 -31492076 + L2 LINE L2 2926 3090 -223 281 262 24 24 chr12 112294470 112294554 -31491901 + MLT1L LTR MaLR 499 582 -33 383 288 88 0 chr12 112294661 112294786 -31491669 - MIR SINE MIR -28 234 99 816 291 98 30 chr12 112294867 112295266 -31491189 + MLT1K LTR MaLR 145 570 -18 190 370 33 0 chr12 112295382 112295474 -31490981 + L2 LINE L2 2868 2962 -310 202 275 150 0 chr12 112295743 112295823 -31490632 - MIR3 SINE MIR -19 189 98 753 169 56 17 chr12 112295993 112296171 -31490284 - MER53 DNA DNA -1 188 4 280 189 19 0 chr12 112296899 112296952 -31489503 + MLT1K LTR MaLR 511 564 -24 203 125 25 0 chr12 112297039 112297079 -31489376 + A-rich Low_complexity Low_complexity 2 42 0 252 0 0 0 chr12 112298962 112298990 -31487465 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 509 224 109 44 chr12 112299838 112300021 -31486434 - MER117 DNA MER1_type 0 197 3 308 160 0 0 chr12 112302589 112302639 -31483816 - L2 LINE L2 -2 3311 3262 322 234 9 45 chr12 112302732 112302780 -31483675 + (TA)n Simple_repeat Simple_repeat 2 50 -58 3561 186 6 15 chr12 112302780 112303437 -31483018 - MER82 DNA MER2_type -2 651 1 322 234 9 45 chr12 112303437 112303499 -31482956 + (TA)n Simple_repeat Simple_repeat 50 108 0 241 227 0 0 chr12 112303610 112303654 -31482801 + MLT1G3 LTR MaLR 64 107 -423 329 77 0 77 chr12 112303673 112303738 -31482717 + Alu SINE Alu 242 301 -1 331 302 38 0 chr12 112304112 112304218 -31482237 - MIR3 SINE MIR -21 187 78 438 292 10 67 chr12 112304817 112304999 -31481456 - MIR SINE MIR -57 205 30 770 282 87 8 chr12 112305108 112305360 -31481095 - Charlie8 DNA MER1_type -2143 274 3 373 253 112 65 chr12 112305891 112306258 -31480197 + L1ME4a LINE L1 5728 6111 -10 295 267 34 27 chr12 112306692 112306838 -31479617 + MER113 DNA MER1_type? 1 147 -374 222 253 40 91 chr12 112307125 112307224 -31479231 + MIR SINE MIR 99 192 -70 1815 100 0 0 chr12 112307255 112307496 -31478959 + AluSx SINE Alu 53 293 -19 195 204 0 0 chr12 112307657 112307701 -31478754 + (TA)n Simple_repeat Simple_repeat 1 44 0 227 172 0 52 chr12 112307704 112307762 -31478693 - LTR66 LTR ERVL -171 439 385 180 0 0 0 chr12 112307909 112307929 -31478526 + (TAA)n Simple_repeat Simple_repeat 2 21 0 357 167 192 0 chr12 112308015 112308093 -31478362 + L1MB3 LINE L1 6081 6173 -10 235 281 0 23 chr12 112308107 112308187 -31478268 - MIR SINE MIR -63 145 68 297 0 0 0 chr12 112308954 112308987 -31477468 + (CA)n Simple_repeat Simple_repeat 2 34 0 567 276 0 13 chr12 112309103 112309259 -31477196 + MIR SINE MIR 99 252 -10 1405 252 73 9 chr12 112309354 112309803 -31476652 - MER113 DNA MER1_type? -43 478 1 1858 155 53 0 chr12 112310370 112310693 -31475762 + L1MB3 LINE L1 5840 6179 -4 405 276 138 28 chr12 112310857 112311074 -31475381 + MIR SINE MIR 21 261 -1 202 363 20 20 chr12 112311223 112311325 -31475130 + MIR SINE MIR 10 111 -151 403 239 0 0 chr12 112311335 112311431 -31475024 + MER5A DNA MER1_type 14 98 -80 508 259 12 56 chr12 112311467 112311629 -31474826 + MIR SINE MIR 104 258 -4 261 295 48 19 chr12 112311636 112311741 -31474714 + MIR SINE MIR 100 207 -55 825 213 0 0 chr12 112311745 112311909 -31474546 + FRAM SINE Alu 1 157 -19 601 210 0 93 chr12 112311924 112312086 -31474369 - MIR SINE MIR -26 236 90 288 340 215 16 chr12 112312721 112312912 -31473543 + MIR SINE MIR 28 256 -6 220 336 34 17 chr12 112312931 112313050 -31473405 + L2 LINE L2 2928 3048 -224 408 289 64 13 chr12 112313134 112313289 -31473166 - L2 LINE L2 -213 3059 2899 436 272 158 11 chr12 112313304 112313488 -31472967 + L2 LINE L2 3040 3250 -63 309 291 117 0 chr12 112313531 112313634 -31472821 + L2 LINE L2 3199 3313 0 246 214 68 87 chr12 112313723 112313826 -31472629 - MSTC LTR MaLR -288 140 40 256 200 47 71 chr12 112314789 112314874 -31471581 - L2 LINE L2 0 3313 3231 263 315 99 9 chr12 112314887 112314998 -31471457 + MIR3 SINE MIR 73 193 -15 223 307 0 68 chr12 112315771 112315859 -31470596 + L2 LINE L2 3182 3263 -9 304 330 128 0 chr12 112315910 112316019 -31470436 - MIR SINE MIR -123 139 17 377 240 129 41 chr12 112316074 112316245 -31470210 - MIR SINE MIR -70 192 7 809 227 6 12 chr12 112317009 112317172 -31469283 + MIR SINE MIR 28 189 -73 316 279 54 27 chr12 112317251 112317362 -31469093 + L2 LINE L2 3151 3264 -8 1442 165 18 18 chr12 112319364 112319661 -31466794 - AluJo SINE Alu 0 310 14 364 292 51 7 chr12 112319754 112319891 -31466564 + L1ME4a LINE L1 5622 5764 -357 723 177 5 0 chr12 112319967 112320170 -31466285 + L1MD3 LINE L1 7728 7995 0 490 266 26 7 chr12 112320189 112320343 -31466112 + L1ME4a LINE L1 5964 6120 -1 266 287 21 32 chr12 112320988 112321082 -31465373 + L2 LINE L2 2740 2832 -482 538 183 92 78 chr12 112321101 112321243 -31465212 + L2 LINE L2 3169 3312 -1 502 262 29 52 chr12 112321274 112321446 -31465009 - MIR SINE MIR 0 262 95 451 299 51 17 chr12 112322226 112322403 -31464052 + MIR SINE MIR 80 262 0 205 176 0 0 chr12 112322605 112322639 -31463816 + GA-rich Low_complexity Low_complexity 1 34 0 1906 129 14 3 chr12 112323177 112323471 -31462984 + AluSx SINE Alu 1 297 -15 519 269 118 34 chr12 112324071 112324309 -31462146 - MIR SINE MIR -2 260 3 240 186 0 0 chr12 112324533 112324576 -31461879 - MIR3 SINE MIR -4 204 162 380 261 200 0 chr12 112325463 112325578 -31460877 - MIR SINE MIR 0 262 125 875 152 0 0 chr12 112325582 112325714 -31460741 + FLAM_C SINE Alu 2 133 0 1346 243 36 61 chr12 112325732 112325904 -31460551 - L1ME3A LINE L1 -99 6071 5896 1853 92 78 4 chr12 112325904 112326175 -31460280 + AluSc SINE Alu 1 291 -18 1346 243 36 61 chr12 112326175 112326447 -31460008 - L1ME3A LINE L1 -274 5896 5638 1889 134 0 32 chr12 112327462 112327776 -31458679 - AluJb SINE Alu -8 304 1 389 184 11 35 chr12 112329128 112329215 -31457240 + MIR SINE MIR 61 145 -117 533 221 0 10 chr12 112330519 112330623 -31455832 + MER5B DNA MER1_type 76 178 0 617 210 91 17 chr12 112330724 112330926 -31455529 - MIR SINE MIR -3 259 44 256 152 22 0 chr12 112330965 112331011 -31455444 + MADE1 DNA Mariner 1 47 -33 184 119 71 48 chr12 112331027 112331069 -31455386 + MIR SINE MIR 204 246 -16 211 200 0 0 chr12 112331085 112331125 -31455330 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 474 224 0 19 chr12 112331401 112331508 -31454947 - MER5A DNA MER1_type 0 189 85 592 317 91 0 chr12 112333218 112333448 -31453007 + MIR SINE MIR 12 262 0 1100 161 0 0 chr12 112333455 112333629 -31452826 - AluSg/x SINE Alu -9 303 130 350 140 8 0 chr12 112334036 112334103 -31452352 - Alu SINE Alu -253 48 1 581 316 145 14 chr12 112334108 112334612 -31451843 + L2 LINE L2 2694 3272 0 233 98 24 0 chr12 112334734 112334775 -31451680 + (TTG)n Simple_repeat Simple_repeat 3 44 0 1762 185 65 5 chr12 112335265 112335633 -31450822 + MLT1B LTR MaLR 1 390 0 372 245 20 20 chr12 112335637 112335735 -31450720 + MIR SINE MIR 95 192 -70 266 275 0 38 chr12 112336153 112336233 -31450222 - Charlie4 DNA MER1_type -3 1958 1882 1234 164 10 0 chr12 112336267 112336474 -31449981 + MER3 DNA MER1_type 1 209 0 408 301 3 14 chr12 112336609 112336779 -31449676 - MIR SINE MIR -58 204 40 188 310 78 23 chr12 112337420 112337549 -31448906 + L2 LINE L2 2928 3063 -209 2677 92 11 5 chr12 112337590 112337958 -31448497 + THE1C LTR MaLR 1 370 -5 1990 149 0 0 chr12 112337998 112338299 -31448156 - AluSx SINE Alu -11 301 1 823 161 51 0 chr12 112338443 112338580 -31447875 - MER5A DNA MER1_type -45 144 1 1973 140 3 0 chr12 112338885 112339185 -31447270 - AluSx SINE Alu -10 302 2 546 295 39 23 chr12 112339230 112339535 -31446920 + L1ME4a LINE L1 5613 5922 -199 262 0 53 0 chr12 112340684 112340722 -31445733 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 215 308 13 64 chr12 112341893 112341971 -31444484 + L2 LINE L2 3229 3302 -11 255 228 0 51 chr12 112341972 112342051 -31444404 + GA-rich Low_complexity Low_complexity 4 78 0 184 259 19 19 chr12 112343101 112343155 -31443300 - MIR SINE MIR -90 118 65 268 240 19 136 chr12 112343178 112343332 -31443123 - MIR SINE MIR 0 262 127 429 141 0 35 chr12 112343423 112343508 -31442947 + MER58 DNA MER1_type 43 124 -91 729 243 162 14 chr12 112343580 112343802 -31442653 + MIR SINE MIR 1 255 -7 487 233 172 18 chr12 112344996 112345159 -31441296 + MIR SINE MIR 74 261 -1 389 188 99 20 chr12 112345534 112345635 -31440820 - MER5A DNA MER1_type -77 112 4 329 235 284 82 chr12 112345700 112345883 -31440572 - MIR SINE MIR -3 259 40 246 326 7 52 chr12 112345898 112346033 -31440422 + L3 LINE CR1 700 828 -749 399 206 27 103 chr12 112347384 112347530 -31438925 + MER5A DNA MER1_type 50 184 -5 361 167 17 0 chr12 112348319 112348379 -31438076 + MIR SINE MIR 119 179 -83 554 245 38 25 chr12 112348470 112348629 -31437826 - MIR3 SINE MIR -18 190 30 226 395 12 0 chr12 112350005 112350086 -31436369 + L2 LINE L2 3199 3280 -33 294 240 27 13 chr12 112350261 112350336 -31436119 + MIR SINE MIR 110 185 -77 453 260 150 53 chr12 112350356 112350583 -31435872 - MIR SINE MIR -1 261 13 294 218 0 0 chr12 112350598 112350653 -31435802 + L2 LINE L2 3251 3305 -8 310 256 0 49 chr12 112351805 112351887 -31434568 + L2 LINE L2 3226 3303 -10 228 247 142 37 chr12 112352127 112352289 -31434166 - MIR SINE MIR -71 191 13 22 0 0 0 chr12 112354341 112354363 -31432092 + AT_rich Low_complexity Low_complexity 1 22 0 644 280 6 6 chr12 112354863 112355038 -31431417 - MER5B DNA MER1_type 0 178 4 316 290 90 33 chr12 112355045 112355230 -31431225 + MIR SINE MIR 16 210 -52 1746 170 0 0 chr12 112355399 112355693 -31430762 + AluSx SINE Alu 1 294 -18 543 301 32 11 chr12 112356277 112356463 -31429992 + MIR SINE MIR 73 262 0 390 273 5 107 chr12 112356618 112356823 -31429632 + MER5A DNA MER1_type 6 189 0 334 325 26 17 chr12 112356823 112356934 -31429521 + L2 LINE L2 3153 3264 -8 334 258 0 67 chr12 112357029 112357118 -31429337 - L2 LINE L2 -1 3271 3189 986 167 97 0 chr12 112357239 112357425 -31429030 + MER3 DNA MER1_type 6 209 0 406 217 54 22 chr12 112358363 112358455 -31428000 - L2 LINE L2 -40 3273 3179 372 305 8 34 chr12 112358539 112358657 -31427798 + L2 LINE L2 3191 3305 -8 1843 112 48 0 chr12 112358657 112358966 -31427489 + AluSx SINE Alu 1 322 0 463 223 25 16 chr12 112358999 112359120 -31427335 - MIR3 SINE MIR -48 160 39 359 306 27 0 chr12 112359147 112359258 -31427197 - L2 LINE L2 -7 3306 3193 499 308 142 19 chr12 112359317 112359528 -31426927 + MIR SINE MIR 11 247 -15 190 233 183 17 chr12 112360173 112360233 -31426222 + L2 LINE L2 3157 3226 -46 487 271 86 0 chr12 112360413 112360553 -31425902 + MIR SINE MIR 111 262 0 415 274 74 7 chr12 112360938 112361073 -31425382 - MIR SINE MIR 0 262 119 1559 179 23 13 chr12 112361093 112361395 -31425060 - AluJo SINE Alu -6 306 2 234 266 0 16 chr12 112361704 112361768 -31424687 - MIR3 SINE MIR -24 184 122 291 281 281 0 chr12 112361876 112362054 -31424401 - MIR SINE MIR -6 256 29 1948 138 3 3 chr12 112362058 112362363 -31424092 - AluSx SINE Alu -4 308 4 368 206 103 31 chr12 112363289 112363386 -31423069 - L2 LINE L2 0 3272 3169 428 307 21 58 chr12 112363642 112363883 -31422572 - MIR SINE MIR 0 262 31 2134 112 0 0 chr12 112363912 112364216 -31422239 - AluSx SINE Alu -8 304 1 323 207 70 150 chr12 112364530 112364743 -31421712 + MER91A DNA MER1_type 1 196 0 509 302 81 18 chr12 112364747 112364969 -31421486 - MIR SINE MIR -12 250 15 2603 128 48 97 chr12 112365112 112365692 -31420763 - L1MB8 LINE L1 -1 6177 5626 214 231 0 39 chr12 112365958 112366010 -31420445 + L3 LINE CR1 1264 1313 -264 251 310 0 28 chr12 112366273 112366344 -31420111 - L2 LINE L2 -1 3271 3203 794 215 200 0 chr12 112366816 112367021 -31419434 + MIR SINE MIR 17 262 0 692 254 28 11 chr12 112367455 112367632 -31418823 + MIR SINE MIR 77 256 -6 274 313 165 17 chr12 112367786 112367901 -31418554 + L2 LINE L2 3182 3313 0 389 344 13 6 chr12 112368010 112368167 -31418288 + MIR3 SINE MIR 38 195 -13 566 313 30 0 chr12 112368991 112369157 -31417298 - MIR SINE MIR -46 216 46 26 64 0 0 chr12 112372766 112372813 -31413642 + GC_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr12 112372962 112372991 -31413464 + GC_rich Low_complexity Low_complexity 1 29 0 200 100 25 0 chr12 112373111 112373151 -31413304 + (CGG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr12 112373397 112373428 -31413027 + GC_rich Low_complexity Low_complexity 1 31 0 293 221 105 61 chr12 112374685 112374817 -31411638 + MIR SINE MIR 38 171 -43 1129 286 55 16 chr12 112374848 112375215 -31411240 + MLT1I LTR MaLR 27 407 -2 545 269 42 30 chr12 112375310 112375477 -31410978 - MIR SINE MIR -91 171 3 488 259 61 8 chr12 112375680 112375811 -31410644 + MIR SINE MIR 15 152 -110 3647 41 0 32 chr12 112375814 112376277 -31410178 - LTR7 LTR ERV1 -2 448 1 2042 121 0 7 chr12 112376428 112376725 -31409730 - AluSq SINE Alu -18 295 1 1756 141 35 0 chr12 112376957 112377240 -31409215 + L1MA5 LINE L1 5824 6116 -184 229 121 71 61 chr12 112377294 112377393 -31409062 + (TTATA)n Simple_repeat Simple_repeat 4 103 0 1160 92 65 0 chr12 112377393 112377577 -31408878 + L1MA5 LINE L1 6105 6300 0 383 322 89 21 chr12 112377611 112377847 -31408608 - MIR SINE MIR 0 262 11 735 285 79 31 chr12 112378095 112378443 -31408012 + MLT1J2 LTR MaLR 68 450 0 230 324 162 0 chr12 112378669 112378774 -31407681 - L2 LINE L2 0 3272 3151 751 262 39 43 chr12 112378943 112379199 -31407256 + MIR SINE MIR 8 262 0 191 59 0 29 chr12 112379203 112379237 -31407218 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 301 295 50 104 chr12 112380023 112380301 -31406154 + L2 LINE L2 2918 3180 -92 689 181 21 160 chr12 112380305 112380724 -31405731 - Charlie5 DNA MER1_type 0 2624 2264 213 125 42 42 chr12 112380730 112380802 -31405653 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 429 133 0 0 chr12 112380885 112380960 -31405495 + (TGGA)n Simple_repeat Simple_repeat 3 77 0 709 216 136 73 chr12 112381172 112381459 -31404996 + L2 LINE L2 3006 3310 -3 355 240 110 68 chr12 112381471 112381617 -31404838 + MIR SINE MIR 46 197 -65 25 51 0 0 chr12 112381707 112381746 -31404709 + AT_rich Low_complexity Low_complexity 1 39 0 277 276 163 10 chr12 112382345 112382443 -31404012 - L2 LINE L2 0 3272 3160 195 362 43 0 chr12 112383569 112383663 -31402792 - MIR SINE MIR -39 223 126 1497 165 28 11 chr12 112383686 112383971 -31402484 + MER58B DNA MER1_type 37 326 -15 199 221 126 63 chr12 112384085 112384212 -31402243 + MIR SINE MIR 128 262 0 282 254 0 0 chr12 112384260 112384319 -31402136 + MIR SINE MIR 96 154 -108 2011 119 0 19 chr12 112384840 112385150 -31401305 + AluSx SINE Alu 1 304 -8 554 246 121 30 chr12 112385512 112385711 -31400744 + MIR SINE MIR 41 257 -5 249 108 0 0 chr12 112386568 112386605 -31399850 + (CA)n Simple_repeat Simple_repeat 2 38 0 294 348 70 30 chr12 112387444 112387645 -31398810 + L2 LINE L2 3048 3256 -16 388 250 0 69 chr12 112387672 112387788 -31398667 - MARNA DNA Mariner -17 569 462 626 281 81 60 chr12 112387890 112387953 -31398502 - MLT1L LTR MaLR -10 605 545 2226 97 13 0 chr12 112387953 112388261 -31398194 + AluSx SINE Alu 1 312 0 626 281 81 60 chr12 112388261 112388482 -31397973 - MLT1L LTR MaLR -70 545 315 700 257 37 8 chr12 112388773 112388997 -31397458 - MIR SINE MIR 0 262 36 950 231 68 105 chr12 112389192 112389573 -31396882 + MLT1J LTR MaLR 31 394 -117 2238 46 7 14 chr12 112389573 112389886 -31396569 - AluY SINE Alu 0 311 1 950 231 68 105 chr12 112389886 112389970 -31396485 + MLT1J LTR MaLR 394 480 -31 6237 140 39 18 chr12 112390795 112390930 -31395525 - Tigger3b DNA MER2_type -1798 1230 1099 1552 91 22 26 chr12 112390930 112391161 -31395294 + MER30 DNA MER1_type 1 230 0 6237 140 39 18 chr12 112391161 112392111 -31394344 - Tigger3b DNA MER2_type -1929 1099 123 195 271 141 35 chr12 112392143 112392313 -31394142 + L2 LINE L2 2717 2904 -410 244 91 55 109 chr12 112392390 112392445 -31394010 + HSMAR1 DNA Mariner 1 52 -1235 312 304 19 117 chr12 112392460 112392769 -31393686 - MLT1I LTR MaLR -28 381 103 196 30 61 0 chr12 112393319 112393352 -31393103 + (TAA)n Simple_repeat Simple_repeat 2 36 0 248 278 0 14 chr12 112393352 112393424 -31393031 - MIR SINE MIR -8 254 184 1580 166 41 0 chr12 112393436 112393707 -31392748 + AluJo SINE Alu 3 284 -28 654 229 52 31 chr12 112393725 112393917 -31392538 - MIR SINE MIR -65 197 2 1282 173 14 58 chr12 112394071 112394399 -31392056 - AluJo SINE Alu 0 315 1 206 250 50 17 chr12 112394469 112394529 -31391926 - L2 LINE L2 -1 3271 3210 1609 235 84 35 chr12 112394636 112395066 -31391389 + MLT1H LTR MaLR 99 549 0 4386 163 20 33 chr12 112395559 112395782 -31390673 - L1MB3 LINE L1 -30 6153 5929 2766 128 7 14 chr12 112395782 112396219 -31390236 - MER57B LTR ERV1 0 434 1 4386 163 20 33 chr12 112396219 112396842 -31389613 - L1MB3 LINE L1 -254 5929 5318 394 270 121 6 chr12 112396868 112397042 -31389413 - MIR SINE MIR -32 230 37 21637 99 5 10 chr12 112397512 112398382 -31388073 + L1PA8 LINE L1 706 1579 -4908 1893 69 0 8 chr12 112398382 112398627 -31387828 + AluY SINE Alu 66 308 -3 21637 99 5 10 chr12 112398627 112403553 -31382902 + L1PA8 LINE L1 1579 6486 -1 23 33 0 0 chr12 112404919 112404949 -31381506 + AT_rich Low_complexity Low_complexity 1 30 0 810 121 15 23 chr12 112406946 112407078 -31379377 - FLAM_C SINE Alu -2 131 1 1634 177 81 20 chr12 112407082 112407427 -31379028 - L1MD2 LINE L1 -250 6109 5744 2262 123 0 0 chr12 112408193 112408495 -31377960 - AluSq SINE Alu -11 302 1 553 261 153 0 chr12 112410017 112410220 -31376235 - MIR SINE MIR -25 237 4 319 125 28 14 chr12 112410245 112410317 -31376138 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1971 133 94 55 chr12 112410369 112410752 -31375703 - Tigger7 DNA MER2_type -6 2581 2184 287 224 90 0 chr12 112410739 112410806 -31375649 - Tigger7 DNA MER2_type -470 80 8 * 2390 98 0 0 chr12 112410859 112411165 -31375290 - AluSc SINE Alu -3 306 1 434 252 84 14 chr12 112411260 112411403 -31375052 + LTR33 LTR ERVL 21 173 -348 410 319 24 12 chr12 112412807 112412976 -31373479 + MIR3 SINE MIR 30 200 -8 534 246 51 42 chr12 112413655 112413870 -31372585 + MIR SINE MIR 32 248 -14 903 135 0 8 chr12 112414065 112414198 -31372257 + FLAM_C SINE Alu 1 132 -1 318 272 19 10 chr12 112414554 112414657 -31371798 - MIR SINE MIR -118 144 41 2312 111 0 0 chr12 112414932 112415229 -31371226 - AluSx SINE Alu -15 297 1 24 0 0 0 chr12 112415337 112415361 -31371094 + AT_rich Low_complexity Low_complexity 1 24 0 430 291 70 6 chr12 112415804 112415976 -31370479 + MIR SINE MIR 25 207 -55 1910 159 3 3 chr12 112416704 112417000 -31369455 + AluJb SINE Alu 1 296 -16 273 296 65 0 chr12 112417221 112417329 -31369126 - L2 LINE L2 0 3313 3199 405 257 7 42 chr12 112417503 112417647 -31368808 + Charlie8 DNA MER1_type 94 232 -2185 338 285 118 0 chr12 112418212 112418356 -31368099 - MIR SINE MIR -16 246 86 306 303 149 13 chr12 112418739 112418967 -31367488 + L1ME4a LINE L1 5862 6120 -1 3330 143 39 2 chr12 112419284 112419821 -31366634 + MER41D LTR ERV1 1 557 0 184 291 101 0 chr12 112419856 112419935 -31366520 - MIR SINE MIR -52 210 124 305 273 136 59 chr12 112420549 112420769 -31365686 + MIR SINE MIR 20 256 -6 352 213 50 0 chr12 112421004 112421084 -31365371 - MER103 DNA DNA -80 86 3 195 271 71 14 chr12 112421703 112421773 -31364682 + MIR SINE MIR 29 102 -106 694 206 186 10 chr12 112421904 112422103 -31364352 + MIR SINE MIR 29 262 0 264 218 103 0 chr12 112422895 112422973 -31363482 - MIR SINE MIR -68 194 109 199 351 84 37 chr12 112423137 112423257 -31363198 - L2 LINE L2 -38 3234 3121 694 246 49 20 chr12 112423257 112423460 -31362995 - MER3 DNA MER1_type 0 209 1 199 351 84 37 chr12 112423460 112423638 -31362817 - L2 LINE L2 -151 3121 2922 654 264 5 15 chr12 112423680 112423881 -31362574 + MIR SINE MIR 13 211 -51 304 336 35 0 chr12 112423914 112424027 -31362428 - L2 LINE L2 -470 2844 2728 260 271 113 65 chr12 112424028 112424257 -31362198 - Charlie8 DNA MER1_type -2136 281 42 1589 226 9 0 chr12 112425679 112426024 -31360431 + Charlie4a DNA MER1_type 4 351 -157 330 301 224 6 chr12 112426667 112426823 -31359632 + MLT1K LTR MaLR 23 212 -376 741 299 117 10 chr12 112426833 112427124 -31359331 + MLT1K LTR MaLR 172 493 -95 1046 227 55 49 chr12 112427253 112427561 -31358894 - MLT1I LTR MaLR -19 390 81 563 256 12 31 chr12 112427657 112427817 -31358638 - MIR3 SINE MIR -35 173 17 262 267 0 44 chr12 112428843 112428933 -31357522 - MIR SINE MIR -65 197 112 255 253 162 0 chr12 112429012 112429111 -31357344 - L2 LINE L2 0 3272 3158 361 291 16 24 chr12 112430300 112430427 -31356028 - MIR SINE MIR -13 249 124 297 276 6 90 chr12 112430441 112430476 -31355979 - MIR3 SINE MIR -21 187 151 318 345 41 6 chr12 112430476 112430647 -31355808 - MER5B DNA MER1_type 0 178 2 297 276 6 90 chr12 112430647 112430767 -31355688 - MIR3 SINE MIR -57 151 45 332 295 170 0 chr12 112430921 112431033 -31355422 - L2 LINE L2 -8 3264 3134 231 158 0 0 chr12 112431650 112431688 -31354767 - U2 snRNA snRNA -149 39 2 447 215 0 0 chr12 112431733 112431812 -31354643 + MER67A LTR ERV1 3 81 -462 645 161 49 23 chr12 112431813 112431984 -31354471 + MER67A LTR ERV1 4 198 -345 306 87 0 0 chr12 112432150 112432196 -31354259 + (CA)n Simple_repeat Simple_repeat 1 46 0 813 197 0 0 chr12 112432726 112432863 -31353592 + MLT1F LTR MaLR 2 138 -404 777 239 43 16 chr12 112432926 112433114 -31353341 + MLT1H1 LTR MaLR 1 193 -362 * 844 254 10 10 chr12 112433109 112433310 -31353145 + MLT1H1 LTR MaLR 355 555 0 777 172 20 20 chr12 112433338 112433489 -31352966 + Charlie4 DNA MER1_type 24 174 -1787 183 186 0 0 chr12 112433553 112433596 -31352859 + (CA)n Simple_repeat Simple_repeat 2 44 0 224 295 105 9 chr12 112433963 112434068 -31352387 - MIR SINE MIR -94 168 54 2125 139 20 0 chr12 112434273 112434576 -31351879 - AluSx SINE Alu -3 309 1 756 246 18 0 chr12 112434759 112434930 -31351525 - MIR SINE MIR -84 178 5 284 300 127 0 chr12 112434917 112435027 -31351428 + L2 LINE L2 3188 3311 -2 * 259 296 0 12 chr12 112435049 112435130 -31351325 + L2 LINE L2 3232 3311 -2 479 288 28 47 chr12 112436229 112436444 -31350011 - L2 LINE L2 0 3313 3103 331 141 129 35 chr12 112436468 112436553 -31349902 - L1ME3A LINE L1 0 6170 6078 1835 143 87 39 chr12 112436553 112436704 -31349751 + THE1C LTR MaLR 1 143 -232 7043 44 0 30 chr12 112436704 112437977 -31348478 + L1PA4 LINE L1 4912 6154 -1 1835 143 87 39 chr12 112437977 112438182 -31348273 + THE1C LTR MaLR 143 374 -1 459 261 72 0 chr12 112438286 112438424 -31348031 + MLT1I LTR MaLR 8 155 -254 422 199 96 48 chr12 112438470 112438636 -31347819 + MLT1I LTR MaLR 234 407 -2 291 298 82 3 chr12 112438640 112438773 -31347682 - L2 LINE L2 -240 3032 2892 2221 152 6 14 chr12 112438775 112439137 -31347318 + MLT1A1 LTR MaLR 1 359 -6 1194 254 52 17 chr12 112439140 112439502 -31346953 - LTR16C LTR ERVL 0 491 117 491 322 28 9 chr12 112439618 112439832 -31346623 + L2 LINE L2 2603 2820 -494 458 268 181 42 chr12 112440008 112440456 -31345999 - L2 LINE L2 0 3313 2804 283 242 0 0 chr12 112440657 112440719 -31345736 + MIR SINE MIR 59 120 -142 17056 81 13 1 chr12 112440763 112443831 -31342624 - L1PA7 LINE L1 0 6154 3047 14139 134 19 96 chr12 112443831 112446820 -31339635 - L1P LINE L1 -3384 2762 3 313 371 74 9 chr12 112446915 112447144 -31339311 + MIR SINE MIR 7 250 -12 2253 147 60 60 chr12 112447401 112447904 -31338551 + MLT1D LTR MaLR 3 505 0 2221 98 0 10 chr12 112447940 112448237 -31338218 + AluSg SINE Alu 1 294 -16 2148 113 17 7 chr12 112448247 112448540 -31337915 + AluSq SINE Alu 1 296 -17 299 113 19 0 chr12 112449585 112449638 -31336817 + GA-rich Low_complexity Low_complexity 1 54 0 243 0 0 0 chr12 112449733 112449760 -31336695 + (CA)n Simple_repeat Simple_repeat 1 27 0 514 315 9 0 chr12 112450448 112450634 -31335821 - L1MA10 LINE L1 0 6334 5985 4274 242 118 46 chr12 112450635 112450718 -31335737 - L1MEc LINE L1 -4268 2128 2052 1468 65 0 0 chr12 112450718 112450902 -31335553 - L1PA7 LINE L1 -2 6152 5969 4274 242 118 46 chr12 112450902 112451225 -31335230 - L1MEc LINE L1 -4344 2052 1754 1705 174 50 7 chr12 112451225 112451403 -31335052 - AluJb SINE Alu 0 312 114 200 31 62 0 chr12 112451403 112451435 -31335020 + T-rich Low_complexity Low_complexity 2 35 0 1705 174 50 7 chr12 112451435 112451555 -31334900 - AluJb SINE Alu -198 114 1 4274 242 118 46 chr12 112451555 112452647 -31333808 - L1MEc LINE L1 -4642 1754 477 2186 121 0 0 chr12 112452647 112452952 -31333503 - AluSx SINE Alu 0 307 3 4274 242 118 46 chr12 112452952 112453429 -31333026 - L1MEc LINE L1 -5919 477 36 194 91 30 0 chr12 112453488 112453521 -31332934 + (TA)n Simple_repeat Simple_repeat 1 34 0 549 292 54 105 chr12 112453526 112453653 -31332802 - L2 LINE L2 -13 3259 3127 680 191 34 39 chr12 112453653 112453831 -31332624 - MER104 DNA MER2_type 0 180 4 549 292 54 105 chr12 112453831 112454093 -31332362 - L2 LINE L2 -145 3127 2890 530 334 103 14 chr12 112454165 112454184 -31332271 - L2 LINE L2 -578 2736 2720 1948 172 14 14 chr12 112454184 112454532 -31331923 - MER7A DNA MER2_type 0 346 1 530 334 103 14 chr12 112454532 112454871 -31331584 - L2 LINE L2 -594 2720 2346 424 320 153 19 chr12 112455610 112456128 -31330327 - L2 LINE L2 -995 2319 1733 198 156 0 0 chr12 112456129 112456174 -31330281 + T-rich Low_complexity Low_complexity 1 45 0 180 165 266 38 chr12 112456295 112456374 -31330081 - L2 LINE L2 -3 3269 3173 * 539 225 78 26 chr12 112456344 112456374 -31330081 + MIR SINE MIR 6 33 -229 2379 92 0 0 chr12 112456374 112456667 -31329788 + AluSx SINE Alu 1 293 -19 539 225 78 26 chr12 112456667 112456827 -31329628 + MIR SINE MIR 33 206 -56 185 189 0 0 chr12 112456828 112456865 -31329590 - MIR SINE MIR 0 262 226 391 143 16 0 chr12 112456871 112456934 -31329521 - L1MEc LINE L1 -6294 102 39 520 209 237 11 chr12 112457057 112457234 -31329221 - MIR SINE MIR -44 218 2 240 225 9 108 chr12 112458692 112458803 -31327652 - MER102a DNA MER1_type 0 330 231 1595 176 10 14 chr12 112459032 112459321 -31327134 + AluJb SINE Alu 5 292 -20 672 231 79 32 chr12 112459407 112459623 -31326832 - MIR SINE MIR -5 257 32 1965 144 26 7 chr12 112459638 112459944 -31326511 - AluJb SINE Alu 0 312 1 2276 104 0 0 chr12 112460345 112460643 -31325812 - AluY SINE Alu -7 304 7 429 286 26 48 chr12 112461329 112461518 -31324937 - MIR3 SINE MIR -6 202 18 285 264 69 0 chr12 112461964 112462036 -31324419 + MIR3 SINE MIR 83 159 -49 1442 167 11 15 chr12 112462282 112462545 -31323910 + AluJb SINE Alu 1 262 -50 706 293 67 0 chr12 112463244 112463452 -31323003 - MLT1K LTR MaLR -109 479 258 631 247 114 6 chr12 112463502 112463660 -31322795 - MLT1K LTR MaLR -411 177 3 563 93 58 0 chr12 112464152 112464238 -31322217 + L1MB7 LINE L1 6089 6179 -5 844 241 66 0 chr12 112464259 112464500 -31321955 + L1ME3 LINE L1 5904 6160 -2 378 79 79 0 chr12 112464583 112464646 -31321809 + MADE1 DNA Mariner 13 80 0 936 202 5 37 chr12 112464659 112464877 -31321578 + MIR SINE MIR 49 259 -3 212 318 16 32 chr12 112465268 112465394 -31321061 - L2 LINE L2 -571 2743 2620 218 274 195 18 chr12 112465440 112465553 -31320902 + L2 LINE L2 3136 3268 -4 631 176 61 8 chr12 112466195 112466326 -31320129 + MER5A DNA MER1_type 2 139 -50 2305 99 0 10 chr12 112466357 112466671 -31319784 - AluY SINE Alu 0 311 1 270 232 0 0 chr12 112466673 112466729 -31319726 + MER5A DNA MER1_type 133 188 -1 244 203 0 58 chr12 112466731 112466800 -31319655 - MIR3 SINE MIR -49 159 95 3903 117 123 161 chr12 112466804 112468076 -31318379 + pTR5 LTR ERV1 6 581 -133 226 243 86 0 chr12 112469556 112469626 -31316829 - MIR SINE MIR -21 241 166 290 184 13 0 chr12 112469626 112469702 -31316753 + (CACCAT)n Simple_repeat Simple_repeat 2 78 0 181 194 0 0 chr12 112469704 112469735 -31316720 - MIR SINE MIR -156 106 76 207 314 93 0 chr12 112470062 112470148 -31316307 + L2 LINE L2 3178 3271 -1 361 272 141 29 chr12 112470849 112471055 -31315400 + MIR SINE MIR 34 262 0 277 210 16 0 chr12 112471137 112471199 -31315256 + MER5B DNA MER1_type 1 63 -115 2361 94 0 0 chr12 112471200 112471497 -31314958 + AluY SINE Alu 1 297 -14 2057 108 22 0 chr12 112471903 112472180 -31314275 + AluSx SINE Alu 1 283 -29 361 247 13 0 chr12 112472471 112472621 -31313834 + (ATG)n Simple_repeat Simple_repeat 2 153 0 449 299 116 27 chr12 112472703 112472927 -31313528 - MIR SINE MIR -10 252 9 566 0 29 0 chr12 112473548 112473617 -31312838 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 1448 147 27 77 chr12 112473619 112473918 -31312537 - MLT1B LTR MaLR 0 390 107 197 265 102 72 chr12 112474075 112474241 -31312214 + L2 LINE L2 3124 3294 -19 522 108 0 0 chr12 112474241 112474324 -31312131 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 517 160 53 0 chr12 112474328 112474422 -31312033 - MLT1B LTR MaLR -290 100 2 16751 149 26 52 chr12 112474474 112476361 -31310094 + L1MA2 LINE L1 16 1950 -5773 2378 84 10 0 chr12 112476361 112476659 -31309796 - AluSp SINE Alu -12 301 1 16751 149 26 52 chr12 112476659 112477631 -31308824 + L1MA2 LINE L1 1950 2945 -4778 2858 25 0 0 chr12 112477631 112477949 -31308506 + AluYb8 SINE Alu 1 318 0 16751 149 26 52 chr12 112477949 112480606 -31305849 + L1MA2 LINE L1 2945 5669 -2054 2076 97 4 7 chr12 112480606 112480918 -31305537 + AluSx SINE Alu 6 316 0 16751 149 26 52 chr12 112480918 112482654 -31303801 + L1MA2 LINE L1 5669 7451 -272 2195 169 67 5 chr12 112482654 112483057 -31303398 - MSTA LTR MaLR 0 428 1 16751 149 26 52 chr12 112483057 112483324 -31303131 + L1MA2 LINE L1 7451 7723 0 2196 117 3 3 chr12 112483392 112483700 -31302755 - AluSg SINE Alu -2 308 1 280 244 37 0 chr12 112484498 112484580 -31301875 + MIR SINE MIR 130 214 -48 790 250 59 69 chr12 112484783 112484893 -31301562 - L2 LINE L2 -54 3259 3149 2029 96 0 96 chr12 112484893 112485225 -31301230 + AluSx SINE Alu 1 300 -12 790 250 59 69 chr12 112485225 112485518 -31300937 - L2 LINE L2 -164 3149 2860 21 36 0 0 chr12 112485547 112485575 -31300880 + AT_rich Low_complexity Low_complexity 1 28 0 195 294 11 33 chr12 112485647 112485739 -31300716 + L2 LINE L2 3179 3268 -4 3545 136 15 31 chr12 112486239 112486392 -31300063 - MER6A DNA MER2_type -263 602 448 2175 125 0 13 chr12 112486392 112486695 -31299760 + AluSx SINE Alu 1 299 -13 3545 136 15 31 chr12 112486695 112487153 -31299302 - MER6A DNA MER2_type -417 448 1 271 294 96 7 chr12 112487214 112487360 -31299095 - L3b LINE CR1 -122 1461 1303 2122 100 0 4 chr12 112487370 112487651 -31298804 + AluSq SINE Alu 1 280 -33 378 0 0 0 chr12 112487651 112487693 -31298762 + (CA)n Simple_repeat Simple_repeat 1 42 0 358 138 0 0 chr12 112489271 112489329 -31297126 + Alu SINE Alu 244 301 0 24 0 0 0 chr12 112489329 112489353 -31297102 + AT_rich Low_complexity Low_complexity 1 24 0 1947 153 0 13 chr12 112489363 112489664 -31296791 + AluJb SINE Alu 1 297 -15 194 312 32 43 chr12 112489677 112489770 -31296685 + MER5B DNA MER1_type 86 177 -1 26 0 0 0 chr12 112490034 112490060 -31296395 + AT_rich Low_complexity Low_complexity 1 26 0 317 370 17 0 chr12 112490307 112490426 -31296029 + L2 LINE L2 3188 3308 -5 1560 163 10 33 chr12 112490554 112490854 -31295601 + AluSx SINE Alu 1 293 -19 353 155 28 0 chr12 112490854 112490925 -31295530 + GA-rich Low_complexity Low_complexity 1 73 0 826 186 14 0 chr12 112490996 112491141 -31295314 + FRAM SINE Alu 21 167 -9 397 197 17 92 chr12 112491670 112491913 -31294542 - MER63 DNA MER1_type -3 1058 10 307 293 48 18 chr12 112492663 112492894 -31293561 + L1ME4a LINE L1 5576 5820 -301 343 258 0 31 chr12 112493021 112493118 -31293337 + L1ME4a LINE L1 5970 6063 -58 763 218 39 79 chr12 112493159 112493236 -31293219 - MIR SINE MIR -14 248 170 959 202 0 0 chr12 112493236 112493409 -31293046 + FAM SINE Alu 1 173 -2 763 218 39 79 chr12 112493409 112493560 -31292895 - MIR SINE MIR -92 170 29 5434 113 30 53 chr12 112493828 112494739 -31291716 + MER4D LTR ERV1 16 903 0 3481 180 140 20 chr12 112495828 112496694 -31289761 - LTR28 LTR ERV1 0 1020 1 207 0 0 0 chr12 112496962 112496985 -31289470 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 187 337 30 10 chr12 112497211 112497312 -31289143 - MIR SINE MIR -8 254 152 269 235 0 0 chr12 112497345 112497413 -31289042 - L1ME1 LINE L1 -222 5944 5877 262 281 0 9 chr12 112497424 112497514 -31288941 - MIR SINE MIR -102 106 19 3330 230 39 20 chr12 112497799 112498629 -31287826 + L1ME1 LINE L1 5318 6162 -4 342 0 0 0 chr12 112498633 112498671 -31287784 + (CA)n Simple_repeat Simple_repeat 2 39 0 1627 182 98 9 chr12 112498671 112499006 -31287449 + MLT1A1 LTR MaLR 1 365 0 270 0 0 0 chr12 112499009 112499039 -31287416 + (CA)n Simple_repeat Simple_repeat 2 31 0 259 361 107 17 chr12 112499471 112499770 -31286685 + L2 LINE L2 2636 2961 -353 333 146 18 0 chr12 112499776 112499831 -31286624 - U7 snRNA snRNA -6 57 2 307 313 18 119 chr12 112499833 112500168 -31286287 + L2 LINE L2 2939 3239 -33 2393 82 7 10 chr12 112500345 112500651 -31285804 - AluSp SINE Alu -8 305 1 595 184 77 51 chr12 112500952 112501148 -31285307 - L2 LINE L2 0 3313 3113 307 227 114 0 chr12 112501239 112501327 -31285128 + MLT1L LTR MaLR 514 611 -4 1140 266 194 15 chr12 112501643 112502277 -31284178 + L2 LINE L2 2566 3313 0 458 134 51 13 chr12 112502438 112502595 -31283860 + (TA)n Simple_repeat Simple_repeat 1 163 0 2258 98 0 10 chr12 112503393 112503690 -31282765 - AluSg SINE Alu -16 294 1 2071 133 10 0 chr12 112503838 112504132 -31282323 + AluSq SINE Alu 1 297 -16 3357 156 22 2 chr12 112505109 112505646 -31280809 - MER44D DNA MER2_type -2 603 1 1035 263 75 62 chr12 112505651 112506187 -31280268 + MLT1H1 LTR MaLR 10 552 -3 202 254 15 0 chr12 112506247 112506314 -31280141 - L2 LINE L2 -530 2784 2717 1898 138 10 10 chr12 112506555 112506851 -31279604 - AluSx SINE Alu -16 296 1 249 361 128 8 chr12 112507107 112507240 -31279215 - L2 LINE L2 -1 3271 3123 1690 169 43 4 chr12 112507295 112507414 -31279041 + AluJo SINE Alu 3 116 -196 207 0 0 0 chr12 112507414 112507437 -31279018 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1690 169 43 4 chr12 112507437 112507596 -31278859 + AluJo SINE Alu 116 292 -20 245 214 184 87 chr12 112507630 112507733 -31278722 - MLT1J2 LTR MaLR -300 150 38 322 344 19 13 chr12 112507760 112507914 -31278541 - MIR SINE MIR -56 206 52 1817 133 37 114 chr12 112508040 112508417 -31278038 + Tigger3(Golem) DNA MER2_type 1 3028 -1 2169 97 0 10 chr12 112508939 112509263 -31277192 + AluSx SINE Alu 1 321 0 867 197 40 55 chr12 112510521 112510795 -31275660 - LTR37B LTR ERV1 0 468 199 1569 192 14 7 chr12 112510880 112511166 -31275289 - AluJo SINE Alu -24 288 1 414 262 49 43 chr12 112511215 112511379 -31275076 - LTR37B LTR ERV1 -295 173 9 22 35 0 0 chr12 112512545 112512574 -31273881 + AT_rich Low_complexity Low_complexity 1 29 0 2234 112 0 3 chr12 112512587 112512882 -31273573 - AluSx SINE Alu -18 294 1 2204 125 7 3 chr12 112513473 112513778 -31272677 + AluSx SINE Alu 1 306 -6 252 115 211 0 chr12 112515122 112515174 -31271281 - L1MC1 LINE L1 0 6333 6271 23 33 0 0 chr12 112515346 112515376 -31271079 + AT_rich Low_complexity Low_complexity 1 30 0 2259 110 0 3 chr12 112515376 112515667 -31270788 - AluSx SINE Alu -22 290 1 2040 130 10 3 chr12 112515668 112515960 -31270495 - AluSq SINE Alu -19 294 1 940 192 6 28 chr12 112516276 112516458 -31269997 - MER45A DNA AcHobo 0 178 1 2251 82 0 7 chr12 112517173 112517474 -31268981 - AluSg SINE Alu 0 299 1 400 228 54 15 chr12 112518184 112518355 -31268100 - MIR SINE MIR -3 259 40 404 167 47 47 chr12 112519154 112519304 -31267151 + C-rich Low_complexity Low_complexity 2 151 0 385 241 14 21 chr12 112520591 112520736 -31265719 - MER113 DNA MER1_type? -372 149 6 622 245 38 81 chr12 112521921 112522182 -31264273 + MIR SINE MIR 13 262 0 192 276 149 0 chr12 112522265 112522352 -31264103 - L2 LINE L2 -46 3226 3127 428 357 18 13 chr12 112522548 112522775 -31263680 - L2 LINE L2 -259 3054 2827 832 214 212 57 chr12 112523075 112523495 -31262960 - L1MC4 LINE L1 -1 8041 7557 449 279 188 14 chr12 112523522 112523730 -31262725 - MIR SINE MIR 0 262 19 361 284 67 0 chr12 112524675 112524809 -31261646 - MIR SINE MIR 0 262 120 200 328 0 0 chr12 112525150 112525217 -31261238 - MIR SINE MIR -110 98 32 194 250 100 0 chr12 112525867 112525927 -31260528 - L2 LINE L2 -186 3086 3021 194 276 171 9 chr12 112526574 112526679 -31259776 + L2 LINE L2 3150 3271 -1 233 248 175 15 chr12 112527376 112527513 -31258942 - MIR SINE MIR -40 222 64 343 267 126 56 chr12 112528954 112529224 -31257231 - L1ME4a LINE L1 -236 5885 5597 2294 111 3 0 chr12 112529440 112529737 -31256718 + AluSx SINE Alu 1 298 -14 2076 105 22 0 chr12 112530142 112530459 -31255996 + AluSx SINE Alu 1 323 0 2468 63 7 3 chr12 112530603 112530903 -31255552 - AluY SINE Alu -10 301 1 378 0 0 0 chr12 112531373 112531415 -31255040 + (TG)n Simple_repeat Simple_repeat 1 42 0 312 48 0 0 chr12 112531414 112531456 -31254999 + (GA)n Simple_repeat Simple_repeat 1 42 0 * 1766 164 3 23 chr12 112531556 112531861 -31254594 + AluJo SINE Alu 2 300 -12 1539 115 17 4 chr12 112531866 112532100 -31254355 + AluSq SINE Alu 77 313 0 513 314 7 84 chr12 112532132 112532406 -31254049 + L2 LINE L2 3006 3258 -14 204 40 0 0 chr12 112532801 112532826 -31253629 + (AGATG)n Simple_repeat Simple_repeat 2 26 0 1783 161 25 7 chr12 112533299 112533578 -31252877 - AluJo SINE Alu -27 285 2 514 216 86 0 chr12 112533578 112533694 -31252761 + MER94 DNA DNA 8 133 -1 * 599 175 88 15 chr12 112533694 112533830 -31252625 - Charlie8 DNA MER1_type -2228 189 44 1901 212 56 63 chr12 112533942 112534493 -31251962 - MLT1H LTR MaLR -2 547 1 2516 75 0 0 chr12 112535857 112536162 -31250293 - AluSg SINE Alu -5 305 1 2405 93 3 0 chr12 112536172 112536474 -31249981 - AluSg SINE Alu -7 303 1 270 0 0 0 chr12 112537342 112537372 -31249083 + (T)n Simple_repeat Simple_repeat 1 30 0 369 284 74 47 chr12 112537785 112537933 -31248522 - L2 LINE L2 0 3272 3121 1946 147 11 0 chr12 112537965 112538251 -31248204 + AluSx SINE Alu 1 289 -23 2098 127 0 10 chr12 112538462 112538762 -31247693 + AluSx SINE Alu 1 297 -15 300 229 67 76 chr12 112539001 112539106 -31247349 - LTR67 LTR ERVL -26 531 428 362 259 108 42 chr12 112539559 112539725 -31246730 - MLT1J2 LTR MaLR -21 429 253 343 236 130 24 chr12 112539760 112539883 -31246572 - MLT1J2 LTR MaLR -307 143 8 203 349 28 18 chr12 112540171 112540280 -31246175 + MIR SINE MIR 19 128 -134 486 282 126 5 chr12 112540933 112541139 -31245316 - MIR SINE MIR -7 255 25 2334 118 0 6 chr12 112541163 112541477 -31244978 + AluSx SINE Alu 1 312 0 740 148 15 37 chr12 112541498 112541633 -31244822 + FLAM_C SINE Alu 1 132 -1 541 301 151 5 chr12 112542430 112542649 -31243806 + MIR SINE MIR 5 255 -7 2377 79 3 13 chr12 112542821 112543126 -31243329 - AluSg SINE Alu -8 302 1 335 279 130 19 chr12 112543300 112543454 -31243001 - Charlie8 DNA MER1_type -2132 285 115 316 235 82 133 chr12 112543659 112543725 -31242730 + MER5A DNA MER1_type 2 70 -119 2333 84 3 0 chr12 112543725 112544022 -31242433 + AluSx SINE Alu 1 298 -14 316 235 82 133 chr12 112544022 112544038 -31242417 + MER5A DNA MER1_type 70 85 -104 2064 104 22 0 chr12 112544038 112544308 -31242147 + AluSx SINE Alu 7 282 -30 316 235 82 133 chr12 112544308 112544420 -31242035 + MER5A DNA MER1_type 85 187 -2 1517 39 6 0 chr12 112544698 112544878 -31241577 + AluYb8 SINE Alu 136 316 -2 883 141 31 12 chr12 112545002 112545165 -31241290 - L1MB3 LINE L1 -1 6182 6017 367 242 22 0 chr12 112545665 112545756 -31240699 - L1MB3 LINE L1 -2011 5797 5705 244 372 83 12 chr12 112546959 112547201 -31239254 - L2 LINE L2 -341 2973 2715 1794 157 45 0 chr12 112547232 112547519 -31238936 + AluJb SINE Alu 1 300 -12 256 232 242 11 chr12 112548338 112548433 -31238022 - L2 LINE L2 0 3272 3156 2649 160 29 4 chr12 112549138 112549593 -31236862 - MLT1C LTR MaLR -1 466 1 461 152 120 0 chr12 112549699 112549791 -31236664 - L1ME2 LINE L1 -123 6041 5939 1010 242 70 31 chr12 112549818 112550206 -31236249 + L2 LINE L2 2041 2443 -871 217 250 0 19 chr12 112550478 112550530 -31235925 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2357 189 44 0 chr12 112551199 112551634 -31234821 + L1MB7 LINE L1 5431 5884 -300 2290 85 0 3 chr12 112551652 112551946 -31234509 + AluSg SINE Alu 1 293 -17 273 317 28 14 chr12 112552005 112552150 -31234305 - L2 LINE L2 -447 2867 2721 607 258 0 0 chr12 112552185 112552317 -31234138 - FLAM_A SINE Alu -1 132 1 2185 113 0 13 chr12 112552372 112552672 -31233783 + AluSx SINE Alu 2 297 -15 1642 108 48 4 chr12 112552677 112552908 -31233547 - Tigger3(Golem) DNA MER2_type -677 2352 2112 721 136 0 0 chr12 112552927 112553030 -31233425 - Tigger3(Golem) DNA MER2_type -2924 105 3 2084 140 3 3 chr12 112553620 112553928 -31232527 + AluSx SINE Alu 1 308 -4 5471 204 67 31 chr12 112554022 112555508 -31230947 - L1MD3 LINE L1 0 7808 6276 463 235 8 34 chr12 112555501 112555620 -31230835 - L1MC4a LINE L1 -1634 6174 6059 * 2393 225 81 43 chr12 112555769 112556666 -31229789 - L1M4 LINE L1 -779 5367 4437 395 221 27 47 chr12 112556685 112556756 -31229699 + L1ME4a LINE L1 5976 6047 -74 423 0 0 0 chr12 112556756 112556803 -31229652 + (CA)n Simple_repeat Simple_repeat 2 48 0 395 221 27 47 chr12 112556803 112556880 -31229575 + L1ME4a LINE L1 6047 6121 0 22 0 0 0 chr12 112557521 112557543 -31228912 + AT_rich Low_complexity Low_complexity 1 22 0 518 165 96 1 chr12 112557624 112557746 -31228709 - L1MB4 LINE L1 -4 6180 6055 293 351 38 8 chr12 112557779 112557910 -31228545 - MIR3 SINE MIR -35 173 39 32 0 0 0 chr12 112557924 112557956 -31228499 + AT_rich Low_complexity Low_complexity 1 32 0 443 294 57 21 chr12 112558431 112558625 -31227830 + MIR SINE MIR 11 211 -51 2332 92 3 0 chr12 112558770 112559064 -31227391 + AluSp SINE Alu 1 295 -18 1004 195 75 0 chr12 112559603 112559777 -31226678 + MER5A DNA MER1_type 3 189 0 222 37 0 0 chr12 112560573 112560600 -31225855 + (T)n Simple_repeat Simple_repeat 1 27 0 331 211 22 128 chr12 112561130 112561310 -31225145 - L1MC4a LINE L1 -1770 6038 5878 390 238 162 9 chr12 112562046 112562151 -31224304 + MIR SINE MIR 114 234 -28 198 341 80 72 chr12 112562591 112562729 -31223726 - L2 LINE L2 0 3272 3134 2299 111 0 13 chr12 112562925 112563241 -31223214 - AluSx SINE Alu 0 312 1 7075 32 0 0 chr12 112563427 112564274 -31222181 + L1PA3 LINE L1 5321 6167 0 249 254 36 0 chr12 112564282 112564337 -31222118 - L2 LINE L2 -7 3265 3209 1518 155 8 12 chr12 112566278 112566536 -31219919 + AluSx SINE Alu 1 257 -55 231 225 0 0 chr12 112566545 112566616 -31219839 + (ATG)n Simple_repeat Simple_repeat 2 72 0 2097 124 3 7 chr12 112567081 112567388 -31219067 - AluSx SINE Alu -5 307 2 322 234 18 54 chr12 112567422 112567492 -31218963 - MIR SINE MIR -2 260 194 658 65 21 0 chr12 112567492 112567585 -31218870 - L1PB1 LINE L1 -1 6150 6056 322 234 18 54 chr12 112567585 112567625 -31218830 - MIR SINE MIR -68 194 154 39 95 0 0 chr12 112567706 112567822 -31218633 + GC_rich Low_complexity Low_complexity 1 116 0 22 35 0 0 chr12 112568067 112568096 -31218359 + GC_rich Low_complexity Low_complexity 1 29 0 206 254 16 15 chr12 112568154 112568232 -31218223 + C-rich Low_complexity Low_complexity 2 127 0 23 33 0 0 chr12 112568491 112568521 -31217934 + GC_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 112570670 112570700 -31215755 + GC_rich Low_complexity Low_complexity 1 30 0 368 353 111 22 chr12 112571338 112571706 -31214749 - L2 LINE L2 -440 2874 2474 639 263 125 13 chr12 112571828 112572052 -31214403 + MIR SINE MIR 11 259 -3 426 102 0 0 chr12 112572088 112572147 -31214308 + Alu SINE Alu 1 59 -259 2052 115 0 26 chr12 112573142 112573454 -31213001 + AluSx SINE Alu 1 304 -8 391 255 88 10 chr12 112573455 112573557 -31212898 + L1ME LINE L1 5523 5632 -532 3234 127 25 43 chr12 112573569 112574223 -31212232 - L1PA4 LINE L1 -3 6152 5511 32 0 0 0 chr12 112574347 112574379 -31212076 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 112574461 112574482 -31211973 + AT_rich Low_complexity Low_complexity 1 21 0 227 79 26 0 chr12 112575850 112575888 -31210567 + (TA)n Simple_repeat Simple_repeat 1 39 0 515 265 151 53 chr12 112576672 112577183 -31209272 - MLT1F LTR MaLR -13 529 20 2364 92 3 0 chr12 112577704 112578009 -31208446 - AluSp SINE Alu -7 306 1 481 279 0 51 chr12 112578111 112578269 -31208186 - L2 LINE L2 0 3313 3164 1626 266 113 37 chr12 112578433 112579212 -31207243 - L1ME LINE L1 -5166 904 67 1016 218 69 9 chr12 112579212 112579428 -31207027 - MER82 DNA MER2_type 0 653 425 1768 173 29 2 chr12 112579434 112579851 -31206604 - L1M3 LINE L1 -745 5401 5004 400 255 39 0 chr12 112579976 112580078 -31206377 + MIR SINE MIR 88 193 -69 389 309 16 12 chr12 112580110 112580356 -31206099 - L1MEc LINE L1 -4894 1502 1256 409 193 22 58 chr12 112580648 112580802 -31205653 - HsTC2 DNA Tc2 0 1898 29 392 248 80 16 chr12 112580834 112580959 -31205496 - L1MEc LINE L1 -5317 888 756 339 333 48 16 chr12 112581315 112581441 -31205014 + L2 LINE L2 3143 3272 0 358 364 119 22 chr12 112581522 112581841 -31204614 + L2 LINE L2 2406 2755 -559 204 271 14 14 chr12 112583336 112583406 -31203049 + L2 LINE L2 2782 2851 -463 751 308 118 9 chr12 112583801 112584148 -31202307 - L2 LINE L2 -346 2968 2584 279 354 112 6 chr12 112587430 112587591 -31198864 + L2 LINE L2 3093 3270 -2 1390 213 89 14 chr12 112587989 112588337 -31198118 - L1MC4a LINE L1 0 7808 7435 496 277 116 22 chr12 112588409 112588676 -31197779 - L1ME LINE L1 -306 5815 5524 250 289 26 26 chr12 112589834 112589910 -31196545 - MIR SINE MIR -179 83 8 202 303 105 0 chr12 112590457 112590533 -31195922 - L2 LINE L2 -52 3220 3137 408 217 113 17 chr12 112590619 112590734 -31195721 - MIR SINE MIR -74 188 63 337 186 43 14 chr12 112590943 112591013 -31195442 - L2 LINE L2 -1 3312 3241 236 284 68 47 chr12 112591213 112591361 -31195094 + MLT1K LTR MaLR 27 177 -411 1993 116 0 55 chr12 112591564 112591875 -31194580 - AluSx SINE Alu -17 295 2 317 244 24 12 chr12 112591877 112591959 -31194496 + LTR67 LTR ERVL 461 543 -14 612 271 57 21 chr12 112591975 112592167 -31194288 + MIR SINE MIR 45 243 -19 2552 77 26 6 chr12 112594354 112594693 -31191762 - L1PA10 LINE L1 -41 6127 5782 338 263 0 0 chr12 112594837 112594932 -31191523 + (TA)n Simple_repeat Simple_repeat 1 95 0 938 178 23 11 chr12 112594933 112595107 -31191348 - AluJo SINE Alu -17 295 120 1605 172 32 18 chr12 112595536 112595821 -31190634 + AluJo SINE Alu 13 301 -11 1200 160 10 0 chr12 112595877 112596071 -31190384 + AluJo SINE Alu 84 279 -33 1698 175 10 17 chr12 112596206 112596498 -31189957 + AluJo SINE Alu 1 290 -22 1073 243 151 15 chr12 112596556 112597112 -31189343 + L2 LINE L2 2412 3060 -253 243 284 11 23 chr12 112597244 112597332 -31189123 + L2 LINE L2 3159 3245 -68 230 140 0 20 chr12 112597684 112597718 -31188737 + (TA)n Simple_repeat Simple_repeat 2 36 -14 2067 153 23 40 chr12 112597718 112598072 -31188383 - MER7A DNA MER2_type 0 346 1 230 140 0 20 chr12 112598072 112598087 -31188368 + (TA)n Simple_repeat Simple_repeat 36 50 0 327 205 12 23 chr12 112598088 112598203 -31188252 - L1ME LINE L1 -302 5819 5708 2354 110 3 0 chr12 112598265 112598575 -31187880 + AluSp SINE Alu 1 311 -2 1525 164 102 6 chr12 112599473 112599826 -31186629 - Charlie5 DNA MER1_type 0 2624 2238 631 76 50 84 chr12 112599845 112599964 -31186491 - Charlie5 DNA MER1_type -2488 124 10 2084 114 3 10 chr12 112599987 112600286 -31186169 - AluSx SINE Alu -15 297 1 2242 97 7 0 chr12 112600297 112600586 -31185869 - AluSc SINE Alu -18 291 1 299 326 91 8 chr12 112601620 112601752 -31184703 - L2 LINE L2 0 3313 3171 23 0 0 0 chr12 112602847 112602870 -31183585 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr12 112602883 112602912 -31183543 + (A)n Simple_repeat Simple_repeat 1 29 0 2297 106 10 13 chr12 112604893 112605205 -31181250 - AluSx SINE Alu -1 311 1 252 276 39 79 chr12 112605440 112605483 -31180972 + L2 LINE L2 3151 3194 -78 2629 106 11 0 chr12 112605483 112605840 -31180615 - MER46B DNA MER2_type 0 236 1 2790 138 23 23 chr12 112605845 112606279 -31180176 - Tigger2a DNA MER2_type 0 434 1 252 276 39 79 chr12 112606279 112606356 -31180099 + L2 LINE L2 3198 3272 0 3029 189 102 61 chr12 112606405 112607806 -31178649 + L1ME1 LINE L1 4681 6334 0 1873 147 25 11 chr12 112607812 112608097 -31178358 + AluSx SINE Alu 1 289 -23 240 111 0 0 chr12 112608100 112608136 -31178319 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 285 276 49 6 chr12 112609326 112609489 -31176966 - L1M4 LINE L1 -1594 4552 4383 * 433 193 61 94 chr12 112609480 112609693 -31176762 - L1MC5 LINE L1 -35 7926 7721 2839 174 8 13 chr12 112609781 112610259 -31176196 - MLT2B2 LTR ERVL -39 476 1 2271 98 3 3 chr12 112610274 112610571 -31175884 - AluSg SINE Alu -13 297 1 372 186 21 121 chr12 112610571 112610711 -31175744 - L1MC5 LINE L1 -564 7397 7272 808 205 56 78 chr12 112610813 112611156 -31175299 - L1MC4 LINE L1 -719 7242 6931 687 227 18 39 chr12 112611139 112611635 -31174820 - L1M4 LINE L1 -1475 4671 4048 * 249 318 27 0 chr12 112611637 112611747 -31174708 - L1MCc LINE L1 -5654 769 657 497 253 89 32 chr12 112612016 112612206 -31174249 - L1MCc LINE L1 -5954 469 269 762 252 77 35 chr12 112612239 112612525 -31173930 - L1ME3A LINE L1 -183 5987 5690 390 328 9 0 chr12 112612525 112612641 -31173814 + MER5A DNA MER1_type 14 130 -59 405 0 0 0 chr12 112612642 112612687 -31173768 + (TG)n Simple_repeat Simple_repeat 2 46 0 1678 100 0 0 chr12 112612687 112612897 -31173558 - AluSg/x SINE Alu -28 281 72 1174 60 0 0 chr12 112612898 112613032 -31173423 - AluSg1 SINE Alu -173 136 3 342 206 0 0 chr12 112613034 112613097 -31173358 + MER5A DNA MER1_type 126 188 -1 333 250 164 0 chr12 112613108 112613212 -31173243 - L1ME3A LINE L1 -524 5646 5526 1573 167 76 0 chr12 112615582 112615858 -31170597 - AluSx SINE Alu -15 297 1 32 57 0 0 chr12 112615955 112616008 -31170447 + AT_rich Low_complexity Low_complexity 1 53 0 1932 131 137 11 chr12 112616592 112616964 -31169491 - MSTA LTR MaLR -9 419 1 1211 212 77 5 chr12 112617333 112617555 -31168900 + MER8 DNA MER2_type 2 239 0 435 305 64 32 chr12 112617828 112618015 -31168440 - L3 LINE CR1 0 1577 1385 534 306 54 0 chr12 112618611 112618758 -31167697 - L2 LINE L2 0 3313 3159 698 144 0 36 chr12 112618771 112618882 -31167573 + FLAM_A SINE Alu 29 135 -7 772 314 46 31 chr12 112618900 112619287 -31167168 - L2 LINE L2 -169 3144 2752 882 175 137 8 chr12 112619310 112619632 -31166823 - MSTD LTR MaLR 0 396 15 1563 252 78 20 chr12 112619651 112620139 -31166316 - L2 LINE L2 -578 2736 2221 2528 68 3 0 chr12 112620275 112620583 -31165872 + AluY SINE Alu 1 309 -2 276 304 65 0 chr12 112620586 112620678 -31165777 - MIR SINE MIR -131 131 34 180 0 0 0 chr12 112621525 112621545 -31164910 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 33070 49 32 15 chr12 112622992 112627179 -31159276 - L1P LINE L1 -1887 4259 2 2168 131 0 6 chr12 112627180 112627494 -31158961 - AluSx SINE Alu 0 312 1 26 0 0 0 chr12 112628013 112628039 -31158416 + AT_rich Low_complexity Low_complexity 1 26 0 1009 225 142 79 chr12 112628128 112628635 -31157820 - HAL1 LINE L1 -904 1603 1065 2422 84 0 10 chr12 112628659 112628970 -31157485 - AluY SINE Alu -3 308 1 1355 137 11 163 chr12 112629000 112629437 -31157018 - AluJb SINE Alu 0 399 16 290 286 152 41 chr12 112629487 112629658 -31156797 - HAL1 LINE L1 -1594 913 724 879 245 202 37 chr12 112629986 112630686 -31155769 - L2 LINE L2 -3 3310 2495 258 297 117 36 chr12 112630948 112631059 -31155396 - HAL1 LINE L1 -2387 120 1 21 0 0 0 chr12 112631138 112631159 -31155296 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr12 112631225 112631245 -31155210 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 15121 133 20 27 chr12 112631669 112634154 -31152301 - L1P LINE L1 -3667 2479 11 231 294 128 0 chr12 112634171 112634273 -31152182 + L2 LINE L2 3199 3313 0 10368 21 2 2 chr12 112634422 112636339 -31150116 - L1PA2 LINE L1 -4 6151 4235 441 204 84 98 chr12 112636485 112636695 -31149760 - MLT1G LTR MaLR -319 228 47 1218 218 89 62 chr12 112636697 112637101 -31149354 - L1ME LINE L1 -5649 421 7 26 88 0 0 chr12 112637373 112637441 -31149014 + AT_rich Low_complexity Low_complexity 1 68 0 745 260 150 29 chr12 112637445 112638124 -31148331 - L1ME3 LINE L1 -210 5952 5211 21 36 0 0 chr12 112638133 112638161 -31148294 + AT_rich Low_complexity Low_complexity 1 28 0 2299 101 0 0 chr12 112638161 112638449 -31148006 - AluSx SINE Alu -24 288 1 2894 129 31 7 chr12 112638531 112638949 -31147506 + MSTA LTR MaLR 1 428 0 379 258 226 40 chr12 112638955 112639335 -31147120 - L1ME3 LINE L1 -1121 5025 4575 1904 151 43 0 chr12 112639463 112639762 -31146693 - AluJo SINE Alu 0 312 1 21 57 0 0 chr12 112640709 112640744 -31145711 + AT_rich Low_complexity Low_complexity 1 35 0 208 244 0 0 chr12 112642248 112642293 -31144162 + T-rich Low_complexity Low_complexity 5 49 0 522 271 47 59 chr12 112642604 112642774 -31143681 + MIR3 SINE MIR 36 203 -5 288 255 0 20 chr12 112643328 112643426 -31143029 - L1ME4a LINE L1 -64 6057 5962 515 324 82 55 chr12 112643661 112644066 -31142389 - L2 LINE L2 -90 3182 2750 1597 174 43 13 chr12 112644066 112644365 -31142090 - AluJb SINE Alu -4 308 1 515 324 82 55 chr12 112644365 112644486 -31141969 - L2 LINE L2 -522 2750 2634 201 39 0 0 chr12 112644980 112645006 -31141449 + (TG)n Simple_repeat Simple_repeat 1 26 0 841 192 20 20 chr12 112645007 112645158 -31141297 - AluJo SINE Alu -38 274 124 311 288 14 75 chr12 112645741 112645887 -31140568 + MIR3 SINE MIR 61 197 -11 220 336 64 14 chr12 112646055 112646195 -31140260 - L2 LINE L2 -4 3268 3122 916 251 34 0 chr12 112646225 112646460 -31139995 - MIR SINE MIR -16 246 4 387 359 55 43 chr12 112646613 112647031 -31139424 + L2 LINE L2 1490 1912 -1402 1763 156 24 7 chr12 112647053 112647342 -31139113 - AluSg SINE Alu -16 294 1 445 300 14 7 chr12 112647343 112647483 -31138972 - L2 LINE L2 -10 3303 3163 473 230 26 18 chr12 112647530 112647643 -31138812 + L2 LINE L2 3200 3313 0 2203 91 21 0 chr12 112648208 112648494 -31137961 - AluSg SINE Alu -18 292 1 263 320 131 60 chr12 112648613 112649026 -31137429 + L2 LINE L2 2826 3267 -5 520 231 100 15 chr12 112649087 112649217 -31137238 + MIR SINE MIR 49 189 -73 522 272 75 0 chr12 112649936 112650109 -31136346 - MIR3 SINE MIR 0 208 23 1142 232 31 4 chr12 112650264 112650518 -31135937 - MIR SINE MIR 0 262 2 221 176 0 39 chr12 112650520 112650571 -31135884 + MIR SINE MIR 201 249 -13 7167 60 10 21 chr12 112651421 112652443 -31134012 - L1PA7 LINE L1 -1 6153 5118 24 0 0 0 chr12 112652767 112652791 -31133664 + GC_rich Low_complexity Low_complexity 1 24 0 1416 102 0 0 chr12 112652944 112653131 -31133324 + THE1B LTR MaLR 178 364 0 21 36 0 0 chr12 112653595 112653623 -31132832 + AT_rich Low_complexity Low_complexity 1 28 0 295 357 32 7 chr12 112656363 112656517 -31129938 + MLT1J LTR MaLR 352 509 -2 195 337 24 0 chr12 112656523 112656606 -31129849 - MIR SINE MIR -177 85 1 381 221 0 79 chr12 112657234 112657361 -31129094 - MIR SINE MIR -32 230 114 321 345 78 13 chr12 112659323 112659555 -31126900 + L1ME LINE L1 5266 5512 -609 240 213 98 0 chr12 112659556 112659617 -31126838 + L1ME LINE L1 5560 5626 -495 838 143 74 118 chr12 112659661 112659864 -31126591 + AluJo SINE Alu 1 194 -118 633 280 94 18 chr12 112660398 112660673 -31125782 + MLT1K LTR MaLR 72 367 -221 21 36 0 0 chr12 112660724 112660752 -31125703 + AT_rich Low_complexity Low_complexity 1 28 0 2140 129 0 0 chr12 112660752 112661046 -31125409 + AluSx SINE Alu 1 294 -18 859 280 46 41 chr12 112661053 112661450 -31125005 - L1ME1 LINE L1 -28 6138 5742 229 106 85 43 chr12 112661463 112661510 -31124945 + MLT1K LTR MaLR 435 483 -105 4626 173 35 20 chr12 112661718 112662649 -31123806 - L1MB5 LINE L1 0 6174 5227 974 236 55 66 chr12 112662817 112663257 -31123198 + MER113 DNA MER1_type? 7 441 -80 319 276 13 0 chr12 112664443 112664519 -31121936 + L2 LINE L2 3192 3268 -4 1362 144 159 42 chr12 112666383 112666647 -31119808 + AluJo SINE Alu 1 295 -17 712 203 31 6 chr12 112670570 112670733 -31115722 + MIR SINE MIR 58 224 -38 1512 93 30 55 chr12 112671115 112671351 -31115104 - MER30 DNA MER1_type 0 230 1 493 141 106 0 chr12 112671491 112671576 -31114879 + FLAM SINE Alu 38 131 -12 281 315 81 0 chr12 112671752 112671863 -31114592 - L2 LINE L2 -3 3310 3191 789 266 106 4 chr12 112671903 112672159 -31114296 + L2 LINE L2 3032 3313 0 2281 97 0 37 chr12 112672659 112672980 -31113475 - AluSq SINE Alu 0 313 5 242 308 189 12 chr12 112673731 112673900 -31112555 - MIR3 SINE MIR -5 203 5 255 264 147 39 chr12 112674128 112674257 -31112198 + MIR SINE MIR 47 189 -73 1109 300 56 25 chr12 112674447 112675158 -31111297 - L2 LINE L2 -3 3310 2574 192 370 0 0 chr12 112676001 112676074 -31110381 + L2 LINE L2 3157 3229 -43 1052 158 99 15 chr12 112676177 112676379 -31110076 + MER20 DNA MER1_type 1 219 0 183 241 58 69 chr12 112676511 112676598 -31109857 + MIR SINE MIR 125 210 -52 187 295 114 29 chr12 112678017 112678122 -31108333 - MIR SINE MIR -146 116 3 284 317 89 56 chr12 112678670 112678850 -31107605 - MIR3 SINE MIR -6 202 17 504 254 17 0 chr12 112678916 112679034 -31107421 - L2 LINE L2 -4 3309 3190 1972 132 40 10 chr12 112679372 112679675 -31106780 - AluJb SINE Alu 0 312 1 430 213 115 8 chr12 112681926 112682048 -31104407 - L1ME4a LINE L1 0 6121 5987 261 312 251 0 chr12 112682187 112682450 -31104005 - L1ME4a LINE L1 -233 5888 5560 269 178 140 75 chr12 112684574 112684681 -31101774 + MER103 DNA DNA 10 123 -43 2160 121 7 7 chr12 112684865 112685172 -31101283 - AluJb SINE Alu -5 307 1 226 271 167 0 chr12 112685507 112685603 -31100852 - L2 LINE L2 -21 3251 3140 263 283 28 9 chr12 112685738 112685844 -31100611 - MIR SINE MIR -114 148 41 796 170 0 22 chr12 112686188 112686323 -31100132 + FLAM_A SINE Alu 2 133 0 21 110 0 0 chr12 112686357 112686448 -31100007 + AT_rich Low_complexity Low_complexity 1 91 0 1018 232 52 65 chr12 112686757 112687140 -31099315 - MLT1B LTR MaLR -8 382 5 1552 228 97 54 chr12 112687186 112687368 -31099087 + L1ME3A LINE L1 5580 5753 -417 1866 121 39 70 chr12 112687368 112687755 -31098700 + THE1C LTR MaLR 1 375 0 1552 228 97 54 chr12 112687755 112687864 -31098591 + L1ME3A LINE L1 5753 5856 -314 2301 100 0 3 chr12 112687864 112688164 -31098291 + AluSx SINE Alu 5 303 -9 1552 228 97 54 chr12 112688164 112688427 -31098028 + L1ME3A LINE L1 5856 6159 -11 528 254 114 14 chr12 112688460 112688680 -31097775 + MIR SINE MIR 18 259 -3 683 179 30 0 chr12 112689998 112690132 -31096323 + MER5A DNA MER1_type 1 138 -51 985 115 214 16 chr12 112690413 112690526 -31095929 + MER30 DNA MER1_type 1 90 -140 2323 97 0 0 chr12 112690526 112690816 -31095639 + AluSg SINE Alu 6 295 -15 985 115 214 16 chr12 112690816 112690894 -31095561 + MER30 DNA MER1_type 90 230 0 438 275 0 0 chr12 112691065 112691185 -31095270 + MIR SINE MIR 143 262 0 1177 174 39 0 chr12 112691216 112691423 -31095032 - MER20 DNA MER1_type -4 215 1 409 302 121 26 chr12 112692499 112692644 -31093811 + MIR SINE MIR 8 185 -77 1666 164 10 48 chr12 112692644 112692766 -31093689 + AluJo SINE Alu 1 126 -186 2617 53 0 0 chr12 112692766 112693065 -31093390 - AluY SINE Alu -12 299 1 1666 164 10 48 chr12 112693065 112693235 -31093220 + AluJo SINE Alu 126 282 -30 409 302 121 26 chr12 112693235 112693321 -31093134 + MIR SINE MIR 185 261 -1 193 265 73 15 chr12 112694658 112694726 -31091729 - L2 LINE L2 -43 3270 3199 197 333 0 14 chr12 112695240 112695312 -31091143 - L2 LINE L2 -217 3055 2985 213 297 242 0 chr12 112696651 112696779 -31089676 - MIR SINE MIR -58 204 46 662 153 7 0 chr12 112696989 112697133 -31089322 + (TG)n Simple_repeat Simple_repeat 1 145 0 233 200 80 0 chr12 112697493 112697543 -31088912 - L1ME4a LINE L1 -83 6038 5985 257 240 40 0 chr12 112697697 112697772 -31088683 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 189 74 0 0 chr12 112698024 112698051 -31088404 + (CA)n Simple_repeat Simple_repeat 1 27 0 3890 218 57 54 chr12 112698070 112699260 -31087195 - L1MC5 LINE L1 -49 7912 6717 432 0 0 0 chr12 112699260 112699308 -31087147 + (TG)n Simple_repeat Simple_repeat 1 48 0 3890 218 57 54 chr12 112699308 112699390 -31087065 - L1MC5 LINE L1 -1244 6717 6637 217 175 0 35 chr12 112699399 112699429 -31087026 + GA-rich Low_complexity Low_complexity 2 31 -25 1181 190 153 43 chr12 112699429 112699755 -31086700 + MLT1A1 LTR MaLR 2 363 -2 217 175 0 35 chr12 112699755 112699781 -31086674 + GA-rich Low_complexity Low_complexity 31 56 0 1447 130 0 5 chr12 112700039 112700246 -31086209 - AluSg/x SINE Alu -10 302 97 304 250 144 64 chr12 112700266 112700530 -31085925 - L1MC4a LINE L1 -1450 6358 6074 33 25 0 0 chr12 112700550 112700590 -31085865 + AT_rich Low_complexity Low_complexity 1 40 0 270 250 0 0 chr12 112700630 112700694 -31085761 - L1MC4a LINE L1 -1915 5893 5830 4629 211 40 45 chr12 112701062 112702395 -31084060 + L1MCb LINE L1 3 1540 -5205 2249 113 7 0 chr12 112702395 112702696 -31083759 + AluSx SINE Alu 1 303 -9 4629 211 40 45 chr12 112702696 112703447 -31083008 + L1MCb LINE L1 1540 2293 -4452 10395 171 36 16 chr12 112703488 112703824 -31082631 - L1PB1 LINE L1 -2 6865 6537 249 108 0 0 chr12 112703824 112703861 -31082594 + (TG)n Simple_repeat Simple_repeat 2 38 0 10395 171 36 16 chr12 112703861 112704319 -31082136 - L1PB1 LINE L1 -330 6537 6090 2578 61 3 0 chr12 112704319 112704629 -31081826 - AluY SINE Alu 0 311 1 10395 171 36 16 chr12 112704629 112710377 -31076078 - L1PB1 LINE L1 -777 6090 31 4799 162 68 35 chr12 112710439 112711439 -31075016 + L1MC3 LINE L1 5318 6350 -1435 1844 151 48 45 chr12 112711445 112711777 -31074678 + MER1B DNA MER1_type 7 339 0 573 158 58 72 chr12 112711778 112711917 -31074538 + L1MC3 LINE L1 6344 6480 -1305 1506 173 31 3 chr12 112711928 112712217 -31074238 + L1MC3 LINE L1 7489 7785 0 2742 219 39 41 chr12 112712296 112713049 -31073406 + L1ME2 LINE L1 5423 6332 -2 32 0 0 0 chr12 112713337 112713369 -31073086 + AT_rich Low_complexity Low_complexity 1 32 0 2279 150 35 11 chr12 112713490 112713856 -31072599 - THE1C LTR MaLR 0 375 1 27 29 0 0 chr12 112713858 112713892 -31072563 + AT_rich Low_complexity Low_complexity 1 34 0 2632 179 19 2 chr12 112714080 112714499 -31071956 - MSTB LTR MaLR 0 426 1 10066 154 35 14 chr12 112714499 112715659 -31070796 - MSTB-int LTR MaLR 0 1651 446 1922 155 0 29 chr12 112715659 112715968 -31070487 + AluSx SINE Alu 1 300 -12 10066 154 35 14 chr12 112715968 112716424 -31070031 - MSTB-int LTR MaLR -1205 446 1 2842 149 17 7 chr12 112716424 112716846 -31069609 - MSTB LTR MaLR 0 426 1 2377 82 7 3 chr12 112717077 112717380 -31069075 + AluSq SINE Alu 1 304 -9 219 284 0 41 chr12 112717745 112717929 -31068526 + A-rich Low_complexity Low_complexity 3 233 0 6931 162 32 50 chr12 112717995 112718722 -31067733 + L1MA6 LINE L1 4043 4782 -1421 2528 30 3 7 chr12 112718722 112719021 -31067434 + AluY SINE Alu 1 298 -13 6931 162 32 50 chr12 112719021 112719590 -31066865 + L1MA6 LINE L1 4782 5341 -862 2321 110 0 3 chr12 112719590 112719899 -31066556 + AluSc SINE Alu 1 308 -1 6931 162 32 50 chr12 112719899 112720017 -31066438 + L1MA6 LINE L1 5341 5460 -743 * 40119 75 10 7 chr12 112720016 112726145 -31060310 - L1PA6 LINE L1 0 6154 11 5610 122 24 7 chr12 112726155 112726997 -31059458 + L1MA6 LINE L1 5445 6300 0 201 237 0 0 chr12 112727774 112727812 -31058643 + polypurine Low_complexity Low_complexity 4 41 0 2216 107 0 0 chr12 112727887 112728167 -31058288 + AluSx SINE Alu 1 280 -32 37 62 0 0 chr12 112728488 112728553 -31057902 + AT_rich Low_complexity Low_complexity 1 65 0 1315 230 160 14 chr12 112728556 112728756 -31057699 - MLT1D LTR MaLR 0 505 336 2491 114 89 30 chr12 112728756 112729160 -31057295 + MSTA LTR MaLR 1 428 0 1315 230 160 14 chr12 112729160 112729377 -31057078 - MLT1D LTR MaLR -169 336 27 1450 160 98 4 chr12 112729442 112729698 -31056757 - AluJb SINE Alu -11 301 22 2011 147 49 43 chr12 112729729 112730077 -31056378 - THE1B LTR MaLR 0 364 15 425 247 32 0 chr12 112730309 112730445 -31056010 + L1MC4a LINE L1 4508 4648 -1498 374 277 75 48 chr12 112730441 112730733 -31055722 + L1MC4a LINE L1 5600 5899 -1909 * 233 229 0 0 chr12 112730788 112730836 -31055619 - MIR SINE MIR -7 255 208 741 299 63 19 chr12 112731175 112731443 -31055012 - MLT1K LTR MaLR -4 584 305 3380 131 25 0 chr12 112731738 112732258 -31054197 - Tigger3(Golem) DNA MER2_type -2 3027 2495 8043 29 0 1 chr12 112732445 112733880 -31052575 - L1PA4 LINE L1 0 6155 4722 1112 96 56 88 chr12 112733888 112734055 -31052400 - Tigger3(Golem) DNA MER2_type -524 2505 2347 1483 165 96 0 chr12 112734055 112734327 -31052128 + AluSg SINE Alu 1 298 -12 1112 96 56 88 chr12 112734327 112734409 -31052046 - Tigger3(Golem) DNA MER2_type -682 2347 2264 679 157 59 0 chr12 112734381 112734483 -31051972 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 320 290 73 8 chr12 112734614 112734738 -31051717 + L2 LINE L2 3168 3299 -14 21 0 0 0 chr12 112734760 112734781 -31051674 + AT_rich Low_complexity Low_complexity 1 21 0 758 229 0 7 chr12 112734989 112735133 -31051322 + MLT1J LTR MaLR 60 202 -309 971 260 173 50 chr12 112735146 112735665 -31050790 + MLT1G1 LTR MaLR 13 595 0 2159 123 25 2 chr12 112735692 112736054 -31050401 + MSTB1 LTR MaLR 3 432 0 271 213 173 13 chr12 112736063 112736138 -31050317 + MLT1J LTR MaLR 224 310 -201 296 208 65 0 chr12 112736205 112736282 -31050173 + MLT1J LTR MaLR 427 508 -3 907 178 101 53 chr12 112737078 112737286 -31049169 - MER20 DNA MER1_type 0 219 2 546 313 100 30 chr12 112737658 112738188 -31048267 + HAL1 LINE L1 1164 1730 -777 460 292 195 0 chr12 112738512 112738820 -31047635 + L1ME LINE L1 2173 2540 -3606 405 156 39 0 chr12 112738831 112738908 -31047547 + L1ME2 LINE L1 6072 6151 -13 1020 282 112 40 chr12 112738912 112739341 -31047114 - LTR16B LTR ERVL -4 460 1 1584 158 7 32 chr12 112739623 112739902 -31046553 + AluJb SINE Alu 1 272 -40 721 138 12 30 chr12 112739902 112740069 -31046386 + GA-rich Low_complexity Low_complexity 1 164 0 406 305 96 32 chr12 112740081 112740363 -31046092 + L1ME LINE L1 4616 4915 -1231 774 157 72 10 chr12 112740363 112740531 -31045924 + MLT1B LTR MaLR 1 172 -213 302 223 13 145 chr12 112740531 112740689 -31045766 + MER21B LTR ERV1 329 554 -377 725 225 56 11 chr12 112741509 112741687 -31044768 + MLT1B LTR MaLR 189 374 0 612 275 7 13 chr12 112741881 112742030 -31044425 - MLT1E LTR MaLR -444 149 2 426 271 82 71 chr12 112742035 112742278 -31044177 + L1ME LINE L1 5346 5598 -523 2327 202 19 5 chr12 112742278 112742698 -31043757 + MSTB LTR MaLR 1 426 0 426 271 82 71 chr12 112742698 112742907 -31043548 + L1ME LINE L1 5598 5803 -318 1012 128 0 0 chr12 112743040 112743217 -31043238 - AluSg/x SINE Alu 0 315 139 1699 127 4 0 chr12 112743218 112743454 -31043001 - AluSx SINE Alu -75 237 1 1136 290 37 19 chr12 112744125 112744556 -31041899 + MLT1L LTR MaLR 93 531 -84 323 211 16 16 chr12 112744639 112744762 -31041693 + CT-rich Low_complexity Low_complexity 2 124 0 2153 136 7 0 chr12 112744919 112745229 -31041226 - AluJb SINE Alu 0 312 1 4120 208 37 32 chr12 112745442 112746010 -31040445 + L1MCb LINE L1 12 576 -5988 1724 167 49 26 chr12 112746010 112746315 -31040140 + AluSx SINE Alu 1 312 0 4120 208 37 32 chr12 112746315 112746705 -31039750 + L1MCb LINE L1 576 962 -5602 2295 90 0 13 chr12 112746705 112747004 -31039451 + AluSx SINE Alu 2 296 -16 4120 208 37 32 chr12 112747004 112747922 -31038533 + L1MCb LINE L1 962 1987 -4577 1399 136 9 14 chr12 112747923 112747945 -31038510 + AluSg/x SINE Alu 66 87 -228 691 211 122 41 chr12 112747945 112748092 -31038363 + AluJo/FRAM SINE Alu 137 295 -7 1399 136 9 14 chr12 112748092 112748320 -31038135 + AluSg/x SINE Alu 87 315 0 900 263 139 23 chr12 112748322 112748892 -31037563 + L1MCb LINE L1 2101 2736 -4009 1252 118 38 9 chr12 112748896 112749107 -31037348 + AluSc SINE Alu 75 291 -18 407 298 16 0 chr12 112749107 112749231 -31037224 + L1MCb LINE L1 2741 2866 -3698 199 319 16 122 chr12 112749430 112749618 -31036837 - L2 LINE L2 -88 3184 3017 2739 210 51 106 chr12 112749996 112751107 -31035348 + L1MC5 LINE L1 6706 7755 -206 441 269 31 23 chr12 112751371 112751501 -31034954 + MER5A DNA MER1_type 53 183 -6 894 328 72 0 chr12 112751526 112751926 -31034529 + L2 LINE L2 2231 2659 -655 276 222 97 0 chr12 112751956 112752028 -31034427 - MLT1H LTR MaLR -17 532 454 718 202 219 0 chr12 112752321 112752504 -31033951 + MIR SINE MIR 40 262 0 307 107 14 112 chr12 112752598 112752668 -31033787 - MLT1H LTR MaLR -35 514 270 241 275 93 83 chr12 112752707 112752900 -31033555 - MLT1H LTR MaLR -248 301 107 319 296 56 35 chr12 112753960 112754102 -31032353 + MIR SINE MIR 118 262 0 432 181 48 19 chr12 112754134 112754239 -31032216 - L1ME3A LINE L1 -5 6165 6058 471 199 0 133 chr12 112754317 112754483 -31031972 + L2 LINE L2 3168 3311 -2 299 254 8 90 chr12 112755199 112755333 -31031122 - L2 LINE L2 -252 3061 2939 260 221 298 19 chr12 112755400 112755504 -31030951 - MIR3 SINE MIR -65 143 11 26 0 0 0 chr12 112755733 112755759 -31030696 + GC_rich Low_complexity Low_complexity 1 26 0 235 359 6 6 chr12 112756038 112756205 -31030250 + GA-rich Low_complexity Low_complexity 1 167 0 * 375 249 40 34 chr12 112756152 112756329 -31030126 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 26 82 0 0 chr12 112756692 112756753 -31029702 + GC_rich Low_complexity Low_complexity 1 61 0 280 171 0 29 chr12 112757200 112757270 -31029185 + T-rich Low_complexity Low_complexity 1 68 0 252 143 0 0 chr12 112757304 112757346 -31029109 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 271 305 0 0 chr12 112757621 112757703 -31028752 + (TG)n Simple_repeat Simple_repeat 1 82 0 330 127 270 0 chr12 112762736 112762799 -31023656 - MADE1 DNA Mariner 0 80 1 201 307 223 6 chr12 112763545 112763711 -31022744 - MIR SINE MIR -15 247 46 324 284 133 28 chr12 112764030 112764241 -31022214 - L2 LINE L2 0 3313 3081 180 292 124 0 chr12 112764259 112764372 -31022083 + MIR SINE MIR 63 189 -73 259 315 36 0 chr12 112764382 112764493 -31021962 - MIR SINE MIR -2 260 146 1794 168 10 7 chr12 112764762 112765065 -31021390 + AluJo SINE Alu 1 304 -8 227 207 11 161 chr12 112765128 112765215 -31021240 - MIR SINE MIR -184 78 5 186 43 0 0 chr12 112765229 112765252 -31021203 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 2376 82 10 3 chr12 112765361 112765664 -31020791 - AluSg SINE Alu -5 305 1 408 335 57 8 chr12 112765979 112766227 -31020228 + MIR SINE MIR 3 262 0 207 298 0 0 chr12 112768978 112769035 -31017420 + GA-rich Low_complexity Low_complexity 2 58 0 486 266 94 34 chr12 112769171 112769372 -31017083 - MIR SINE MIR -36 226 17 705 250 49 18 chr12 112769881 112770105 -31016350 + MIR SINE MIR 18 248 -14 2388 110 19 22 chr12 112770206 112770571 -31015884 + THE1B LTR MaLR 1 364 0 243 296 23 11 chr12 112770895 112770983 -31015472 + L2 LINE L2 3184 3272 0 191 212 106 15 chr12 112771116 112771182 -31015273 - MIR SINE MIR -5 257 186 375 269 74 40 chr12 112771302 112771477 -31014978 - MIR SINE MIR -62 200 20 600 237 82 21 chr12 112771597 112771791 -31014664 - MIR SINE MIR -49 213 8 837 234 0 0 chr12 112771812 112771966 -31014489 + FRAM SINE Alu 1 154 -12 380 359 22 11 chr12 112772065 112772249 -31014206 - MIR SINE MIR -21 241 56 268 247 0 9 chr12 112773485 112773564 -31012891 + MIR SINE MIR 27 103 -105 375 60 0 0 chr12 112773570 112773620 -31012835 + (ATG)n Simple_repeat Simple_repeat 1 50 0 617 212 8 8 chr12 112773879 112774011 -31012444 - MER94 DNA DNA -1 133 2 446 335 97 40 chr12 112774285 112774655 -31011800 + L2 LINE L2 2875 3265 -7 524 266 125 22 chr12 112774712 112775166 -31011289 + L2 LINE L2 2730 3312 -1 291 312 45 19 chr12 112775901 112776055 -31010400 + L2 LINE L2 2887 3044 -228 180 148 99 99 chr12 112776158 112776239 -31010216 + MIR3 SINE MIR 3 83 -125 299 244 0 39 chr12 112776548 112776626 -31009829 - MIR SINE MIR -167 95 21 330 262 81 54 chr12 112776643 112776933 -31009522 + L2 LINE L2 2827 3141 -172 300 260 83 10 chr12 112776936 112777032 -31009423 - L2 LINE L2 -35 3278 3176 234 302 21 10 chr12 112778030 112778126 -31008329 - L2 LINE L2 -18 3254 3158 2440 78 0 7 chr12 112778214 112778520 -31007935 - AluSx SINE Alu -8 304 1 187 265 0 0 chr12 112778535 112778584 -31007871 + L2 LINE L2 3216 3264 -8 749 264 14 14 chr12 112779053 112779269 -31007186 + MIR SINE MIR 47 262 0 464 325 87 42 chr12 112779601 112779936 -31006519 + L3 LINE CR1 975 1324 -253 347 296 106 21 chr12 112781047 112781189 -31005266 + MIR SINE MIR 96 249 -13 257 0 30 0 chr12 112781855 112781888 -31004567 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2340 85 14 0 chr12 112782009 112782303 -31004152 + AluSq SINE Alu 1 298 -15 294 143 0 0 chr12 112782844 112782893 -31003562 + (T)n Simple_repeat Simple_repeat 1 49 0 1507 223 63 34 chr12 112783777 112784222 -31002233 - L1ME2 LINE L1 0 6098 5641 1128 73 0 0 chr12 112784223 112784360 -31002095 + AluY SINE Alu 169 305 -6 7552 184 25 32 chr12 112784385 112785607 -31000848 - L1MB3 LINE L1 0 6183 4955 2256 104 0 7 chr12 112785607 112785906 -31000549 - AluSg SINE Alu -10 300 4 7552 184 25 32 chr12 112785906 112786654 -30999801 - L1MB3 LINE L1 -1228 4955 4204 2258 115 0 0 chr12 112786654 112786950 -30999505 + AluSx SINE Alu 1 296 -16 7552 184 25 32 chr12 112786950 112787465 -30998990 - L1MB3 LINE L1 -1979 4204 3724 2194 108 3 3 chr12 112787465 112787762 -30998693 - AluSq SINE Alu -16 297 1 7552 184 25 32 chr12 112787762 112787919 -30998536 - L1MB3 LINE L1 -2459 3724 3567 7188 238 48 39 chr12 112787918 112788266 -30998189 - L1ME2 LINE L1 -469 5635 5292 * 2283 107 0 0 chr12 112788266 112788557 -30997898 - AluSg SINE Alu -19 291 1 7188 238 48 39 chr12 112788557 112788576 -30997879 - L1ME2 LINE L1 -812 5292 5275 387 0 0 0 chr12 112788576 112788619 -30997836 + (TG)n Simple_repeat Simple_repeat 2 44 0 2473 49 0 3 chr12 112788623 112788907 -30997548 - AluY SINE Alu -28 283 1 7188 238 48 39 chr12 112788907 112790870 -30995585 - L1ME2 LINE L1 -831 5273 3239 2125 112 0 30 chr12 112790870 112791166 -30995289 - AluSg SINE Alu -23 287 1 7188 238 48 39 chr12 112791166 112791804 -30994651 - L1ME2 LINE L1 -2865 3239 2608 2187 133 0 0 chr12 112791825 112792125 -30994330 - AluSx SINE Alu -12 300 1 344 150 8 181 chr12 112792132 112792265 -30994190 - L1ME2 LINE L1 -3401 2679 2570 208 155 84 0 chr12 112792278 112792349 -30994106 + (TA)n Simple_repeat Simple_repeat 1 77 0 2003 253 84 74 chr12 112792361 112794343 -30992112 - L1ME2 LINE L1 -3513 2567 564 3786 105 78 27 chr12 112794351 112795413 -30991042 - MER11A LTR ERVK -4 1232 1 412 288 79 28 chr12 112795960 112796137 -30990318 - L1ME2 LINE L1 -5884 186 1 397 289 19 0 chr12 112796153 112796257 -30990198 - MIR SINE MIR -73 135 30 27 0 0 0 chr12 112796315 112796342 -30990113 + AT_rich Low_complexity Low_complexity 1 27 0 333 170 181 75 chr12 112796361 112796549 -30989906 - L1ME4a LINE L1 -18 6103 5896 213 330 0 10 chr12 112796569 112796669 -30989786 - MIR SINE MIR -50 212 114 2301 77 17 17 chr12 112796721 112797018 -30989437 - AluSc SINE Alu -12 297 1 347 174 0 7 chr12 112797042 112797111 -30989344 - MIR SINE MIR -97 111 45 2240 81 53 0 chr12 112797136 112797421 -30989034 - AluY SINE Alu -11 300 1 357 252 37 37 chr12 112797583 112797690 -30988765 + L2 LINE L2 3165 3271 -42 875 164 0 0 chr12 112797756 112797896 -30988559 + AluJb SINE Alu 156 295 -17 752 289 80 37 chr12 112797902 112798252 -30988203 - MLT1L LTR MaLR -10 605 241 646 205 82 87 chr12 112798350 112798403 -30988052 + MER58C DNA MER1_type 22 74 -2346 2202 89 0 27 chr12 112798403 112798723 -30987732 - AluSc SINE Alu 0 309 3 646 205 82 87 chr12 112798723 112798864 -30987591 + MER58C DNA MER1_type 74 215 0 593 263 0 7 chr12 112799179 112799316 -30987139 - MIR3 SINE MIR -33 175 40 449 279 57 9 chr12 112799866 112800063 -30986392 - MIR SINE MIR -33 229 19 356 230 182 34 chr12 112800220 112800368 -30986087 + MER5A DNA MER1_type 13 182 -7 223 213 0 0 chr12 112800396 112800443 -30986012 - L2 LINE L2 -222 3050 3004 2045 118 11 7 chr12 112801354 112801667 -30984788 + AluSq SINE Alu 1 314 0 315 139 139 76 chr12 112802411 112802490 -30983965 + L2 LINE L2 3168 3251 -21 1242 250 98 55 chr12 112802666 112802861 -30983594 - L1MC4a LINE L1 -1641 6167 5982 2037 145 10 0 chr12 112802861 112803157 -30983298 - AluSx SINE Alu -13 299 1 1242 250 98 55 chr12 112803157 112803544 -30982911 - L1MC4a LINE L1 -1826 5982 5560 1769 164 33 4 chr12 112803553 112803871 -30982584 - AluJb SINE Alu 0 326 1 308 123 19 13 chr12 112803874 112803978 -30982477 - AluJo SINE Alu -161 141 1 640 241 87 23 chr12 112803986 112804251 -30982204 - L1MC4a LINE L1 -2255 5553 5272 457 208 47 0 chr12 112805053 112805159 -30981296 + MIR SINE MIR 46 156 -106 262 268 49 0 chr12 112805232 112805314 -30981141 + MIR SINE MIR 167 252 -10 2122 156 11 16 chr12 112805513 112805878 -30980577 + MLT1A1 LTR MaLR 1 363 -2 666 242 64 0 chr12 112806077 112806234 -30980221 - MIR SINE MIR -71 191 25 784 185 0 0 chr12 112806786 112806916 -30979539 - FLAM_A SINE Alu -3 130 1 349 286 76 9 chr12 112807033 112807138 -30979317 + L2 LINE L2 3161 3272 0 420 302 55 6 chr12 112807415 112807597 -30978858 + MIR SINE MIR 70 260 -2 354 289 78 34 chr12 112807614 112807818 -30978637 - MIR SINE MIR -42 220 8 233 293 108 45 chr12 112808065 112808287 -30978168 + L1ME4a LINE L1 5874 6109 -12 189 225 0 0 chr12 112808325 112808365 -30978090 + L2 LINE L2 3005 3044 -228 341 281 0 43 chr12 112808540 112808679 -30977776 - MIR SINE MIR -46 216 84 262 269 115 98 chr12 112808819 112809124 -30977331 + L2 LINE L2 2963 3272 0 304 287 65 9 chr12 112809154 112809262 -30977193 - MIR SINE MIR -65 143 30 1913 139 17 3 chr12 112809424 112809711 -30976744 - AluSx SINE Alu -21 291 1 248 314 63 49 chr12 112809740 112810027 -30976428 - L1ME LINE L1 -452 5669 5379 239 320 47 39 chr12 112810127 112810255 -30976200 - L2 LINE L2 -33 3239 3111 1825 102 0 42 chr12 112810255 112810519 -30975936 + AluSq SINE Alu 61 313 0 990 261 95 56 chr12 112810798 112811385 -30975070 - MLT1L LTR MaLR -5 610 1 1408 208 36 34 chr12 112811885 112812116 -30974339 + MER58D DNA MER1_type 1 235 -2185 2148 121 21 0 chr12 112812116 112812406 -30974049 - AluSx SINE Alu -16 296 1 1408 208 36 34 chr12 112812406 112812559 -30973896 + MER58D DNA MER1_type 235 386 0 471 151 0 0 chr12 112812654 112812727 -30973728 - MLT1A1 LTR MaLR -3 362 290 1626 142 35 53 chr12 112812751 112813069 -30973386 - MLT1A1 LTR MaLR -53 312 1 482 281 48 17 chr12 112814216 112814401 -30972054 - MIR SINE MIR -48 214 25 2078 142 0 0 chr12 112814877 112815179 -30971276 - AluSx SINE Alu -10 302 1 970 250 9 0 chr12 112815324 112815544 -30970911 + MIR SINE MIR 24 245 -17 374 253 0 11 chr12 112815900 112815991 -30970464 - L2 LINE L2 0 3272 3183 262 226 0 0 chr12 112816006 112816068 -30970387 - LTR66 LTR ERVL -148 462 401 227 133 0 17 chr12 112816070 112816120 -30970335 + (TA)n Simple_repeat Simple_repeat 1 51 -8 2165 112 3 0 chr12 112816120 112816405 -30970050 - AluSp SINE Alu -24 289 4 227 133 0 17 chr12 112816405 112816414 -30970041 + (TA)n Simple_repeat Simple_repeat 51 59 0 1809 153 7 17 chr12 112816436 112816724 -30969731 + AluJo SINE Alu 5 289 -23 350 327 100 23 chr12 112816737 112816957 -30969498 - L2 LINE L2 -146 3167 2931 711 309 25 18 chr12 112816996 112817271 -30969184 - LTR16A LTR ERVL -47 403 127 215 333 0 33 chr12 112817377 112817497 -30968958 - L2 LINE L2 -381 2932 2817 22 0 0 0 chr12 112817843 112817865 -30968590 + AT_rich Low_complexity Low_complexity 1 22 0 360 298 82 62 chr12 112818205 112818329 -30968126 - L1MC4a LINE L1 -1921 5887 5767 2317 113 3 0 chr12 112818329 112818630 -30967825 - AluSx SINE Alu -9 303 2 360 298 82 62 chr12 112818630 112818858 -30967597 - L1MC4a LINE L1 -2041 5767 5528 252 0 0 0 chr12 112820530 112820558 -30965897 + (A)n Simple_repeat Simple_repeat 1 28 0 321 230 96 96 chr12 112821201 112821336 -30965119 + L2 LINE L2 3138 3272 0 181 388 26 20 chr12 112821358 112821510 -30964945 + MIR SINE MIR 28 180 -82 22 35 0 0 chr12 112821549 112821578 -30964877 + AT_rich Low_complexity Low_complexity 1 29 0 499 270 81 11 chr12 112821889 112822063 -30964392 - MIR SINE MIR -54 208 23 252 333 33 0 chr12 112824018 112824108 -30962347 + L2 LINE L2 2560 2652 -662 239 188 0 0 chr12 112824104 112824152 -30962303 - L2 LINE L2 0 3313 3266 * 2203 106 17 0 chr12 112824549 112824842 -30961613 + AluSx SINE Alu 1 298 -14 210 71 0 0 chr12 112824979 112825007 -30961448 + (TTA)n Simple_repeat Simple_repeat 2 29 0 498 229 109 27 chr12 112825374 112825557 -30960898 + MIR SINE MIR 65 262 0 868 193 201 47 chr12 112825748 112826022 -30960433 - MER102a DNA MER1_type -8 322 7 383 229 143 0 chr12 112826269 112826374 -30960081 + L2 LINE L2 3189 3308 -5 359 241 165 8 chr12 112826377 112826510 -30959945 + L2 LINE L2 3160 3313 0 255 336 48 0 chr12 112826520 112826624 -30959831 - L2 LINE L2 -4 3268 3160 981 297 61 50 chr12 112826870 112827331 -30959124 + MARNA DNA Mariner 80 545 -41 526 263 65 21 chr12 112827463 112827649 -30958806 - MIR SINE MIR -21 241 48 257 304 29 20 chr12 112828118 112828220 -30958235 + MIR SINE MIR 42 144 -64 789 203 96 17 chr12 112830314 112830491 -30955964 - MER3 DNA MER1_type -18 191 1 240 214 18 18 chr12 112830758 112830814 -30955641 + CT-rich Low_complexity Low_complexity 3 58 0 246 226 32 11 chr12 112831904 112831997 -30954458 + L2 LINE L2 3094 3188 -125 434 178 161 8 chr12 112832114 112832232 -30954223 + L2 LINE L2 3171 3306 -7 226 265 92 41 chr12 112832252 112832350 -30954105 - MIR SINE MIR -26 236 134 1035 253 8 4 chr12 112833670 112833915 -30952540 - MIR SINE MIR -3 259 14 2264 135 3 15 chr12 112834752 112835093 -30951362 + MER1B DNA MER1_type 1 337 0 311 309 0 0 chr12 112835221 112835305 -30951150 + MIR3 SINE MIR 74 157 -51 253 278 33 0 chr12 112835370 112835460 -30950995 - MIR SINE MIR -21 241 149 6944 135 17 36 chr12 112835486 112836982 -30949473 - L1MC1 LINE L1 -16 6317 4857 376 202 135 56 chr12 112837659 112837837 -30948618 + MIR SINE MIR 63 254 -8 509 268 35 52 chr12 112838630 112838868 -30947587 + L1MC/D LINE L1 5529 5770 -468 23 0 0 0 chr12 112838971 112838994 -30947461 + AT_rich Low_complexity Low_complexity 1 23 0 208 250 0 0 chr12 112838997 112839041 -30947414 + GA-rich Low_complexity Low_complexity 3 46 0 726 191 16 0 chr12 112839787 112839913 -30946542 + FLAM_C SINE Alu 1 128 -5 303 316 8 26 chr12 112840021 112840138 -30946317 + MIR SINE MIR 20 134 -128 197 255 0 0 chr12 112840841 112840888 -30945567 + MIR3 SINE MIR 130 176 -32 607 115 122 101 chr12 112841029 112841168 -30945287 + FLAM_C SINE Alu 2 143 0 931 178 31 76 chr12 112841291 112841505 -30944950 - MER2 DNA MER2_type -21 324 119 2182 128 0 0 chr12 112841505 112841803 -30944652 + AluSx SINE Alu 1 298 -14 2162 120 3 7 chr12 112841824 112842125 -30944330 + AluSx SINE Alu 1 300 -12 473 234 9 0 chr12 112842130 112842240 -30944215 - Charlie7 DNA MER1_type -1851 761 651 2272 163 33 5 chr12 112842240 112842632 -30943823 + MSTB LTR MaLR 1 403 -23 1609 234 87 80 chr12 112842614 112843208 -30943247 - Charlie7 DNA MER1_type -1931 681 80 * 2565 68 0 3 chr12 112843208 112843516 -30942939 + AluY SINE Alu 1 307 -4 1609 234 87 80 chr12 112843516 112843597 -30942858 - Charlie7 DNA MER1_type -2532 80 1 253 386 0 9 chr12 112843597 112843711 -30942744 + L2 LINE L2 1791 1903 -1411 365 228 152 14 chr12 112843950 112844095 -30942360 - MIR SINE MIR -15 247 83 186 257 186 0 chr12 112844155 112844225 -30942230 + L2 LINE L2 3230 3312 -1 2684 251 161 18 chr12 112844407 112845579 -30940876 + L2 LINE L2 1728 3068 -245 2221 93 10 17 chr12 112845589 112845722 -30940733 + AluSg SINE Alu 1 133 -177 2353 101 0 3 chr12 112845722 112846028 -30940427 + AluSc SINE Alu 1 305 -4 2221 93 10 17 chr12 112846028 112846196 -30940259 + AluSg SINE Alu 133 300 -10 194 184 61 0 chr12 112846699 112846748 -30939707 - MIR SINE MIR -170 92 41 2341 110 0 19 chr12 112847113 112847430 -30939025 + AluSx SINE Alu 1 311 -1 215 125 25 0 chr12 112847452 112847492 -30938963 + A-rich Low_complexity Low_complexity 4 44 0 207 0 0 0 chr12 112847839 112847862 -30938593 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7968 17 0 0 chr12 112847862 112849259 -30937196 - L1PA3 LINE L1 -8 6147 4751 195 335 118 49 chr12 112850087 112850478 -30935977 + L2 LINE L2 2823 3240 -32 371 278 71 0 chr12 112851285 112851411 -30935044 - L2 LINE L2 0 3272 3138 187 125 62 0 chr12 112851791 112851823 -30934632 + MIR SINE MIR 112 145 -117 390 308 51 26 chr12 112851958 112852026 -30934429 - MIR SINE MIR -40 222 157 1895 149 3 0 chr12 112852026 112852308 -30934147 - AluJb SINE Alu -24 288 6 390 308 51 26 chr12 112852308 112852434 -30934021 - MIR SINE MIR -105 157 23 707 186 197 5 chr12 112853504 112853697 -30932758 + MIR SINE MIR 11 240 -22 478 255 21 35 chr12 112853761 112853902 -30932553 + L2 LINE L2 3134 3272 0 376 298 21 33 chr12 112853906 112854060 -30932395 + MIR3 SINE MIR 56 208 0 269 238 75 0 chr12 112854073 112854153 -30932302 - MIR SINE MIR 0 262 177 1726 163 0 49 chr12 112854178 112854484 -30931971 + AluJb SINE Alu 11 301 -11 531 244 15 0 chr12 112855729 112855860 -30930595 + MIR3 SINE MIR 49 181 -27 500 317 54 63 chr12 112855876 112856321 -30930134 - L2 LINE L2 -5 3267 2827 224 29 0 29 chr12 112858410 112858444 -30928011 + (TAA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr12 112859755 112859775 -30926680 + (TG)n Simple_repeat Simple_repeat 1 20 0 193 255 21 0 chr12 112861629 112861676 -30924779 + MIR SINE MIR 76 123 -85 1641 117 132 29 chr12 112862094 112862375 -30924080 + AluJo SINE Alu 1 310 -2 624 137 58 153 chr12 112862701 112862765 -30923690 + MER5B DNA MER1_type 1 69 -109 1698 180 18 0 chr12 112862765 112863048 -30923407 + AluJo SINE Alu 1 288 -24 624 137 58 153 chr12 112863048 112863173 -30923282 + MER5B DNA MER1_type 69 172 -6 280 278 50 2 chr12 112864255 112864349 -30922106 - MIR SINE MIR -57 151 53 710 180 36 0 chr12 112864356 112864467 -30921988 + FLAM_C SINE Alu 3 117 -16 271 289 83 32 chr12 112865791 112865947 -30920508 - MIR SINE MIR -6 256 93 249 286 0 0 chr12 112866077 112866126 -30920329 - MIR SINE MIR -140 68 20 208 188 29 87 chr12 112866422 112866491 -30919964 - L3 LINE CR1 -4 1573 1509 21 0 0 0 chr12 112867027 112867048 -30919407 + AT_rich Low_complexity Low_complexity 1 21 0 2143 136 0 0 chr12 112867142 112867443 -30919012 - AluSx SINE Alu -11 301 1 2301 90 7 10 chr12 112867485 112867785 -30918670 - AluSp SINE Alu -14 299 1 565 269 0 0 chr12 112867905 112868024 -30918431 + MER5B DNA MER1_type 1 119 -59 236 299 0 46 chr12 112868139 112868226 -30918229 - MIR3 SINE MIR -7 201 119 301 289 133 15 chr12 112869057 112869192 -30917263 + MIR3 SINE MIR 33 183 -25 228 298 97 26 chr12 112869563 112869677 -30916778 + MIR SINE MIR 99 220 -42 228 236 55 0 chr12 112869786 112869841 -30916614 + L2 LINE L2 3210 3267 -5 193 349 57 28 chr12 112869865 112869971 -30916484 + L2 LINE L2 3200 3308 -5 259 234 216 36 chr12 112870125 112870236 -30916219 + MIR3 SINE MIR 15 145 -63 498 191 70 9 chr12 112870255 112870370 -30916085 + L2 LINE L2 3189 3310 -3 192 281 35 0 chr12 112870372 112870429 -30916026 + MIR SINE MIR 176 234 -28 281 301 0 0 chr12 112870529 112870603 -30915852 + MIR SINE MIR 45 118 -90 195 188 0 0 chr12 112871533 112871581 -30914874 + GA-rich Low_complexity Low_complexity 4 51 0 462 235 29 52 chr12 112872214 112872350 -30914105 - MIR SINE MIR -60 202 70 415 158 167 50 chr12 112872399 112872519 -30913936 - MIR SINE MIR -54 208 75 424 302 101 28 chr12 112872928 112873107 -30913348 - MIR SINE MIR -70 192 1 229 240 0 0 chr12 112873342 112873392 -30913063 - L2 LINE L2 0 3313 3264 1417 180 46 18 chr12 112873795 112874078 -30912377 - AluJb SINE Alu -20 292 2 669 294 52 20 chr12 112874530 112874782 -30911673 + MIR SINE MIR 2 261 -1 1015 215 58 5 chr12 112874809 112875032 -30911423 + MIR SINE MIR 22 256 -6 183 42 0 0 chr12 112875343 112875367 -30911088 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 344 259 114 75 chr12 112875411 112875639 -30910816 - MIR SINE MIR -10 252 16 565 213 0 113 chr12 112875697 112875838 -30910617 + MER2 DNA MER2_type 1 125 -220 769 106 0 10 chr12 112875839 112875943 -30910512 - AluSp/q SINE Alu -23 290 188 2306 72 0 0 chr12 112876043 112876321 -30910134 - AluY SINE Alu -30 281 4 599 243 130 53 chr12 112876409 112876824 -30909631 - L1M4 LINE L1 -913 5233 4787 284 278 44 0 chr12 112876908 112876998 -30909457 + MIR SINE MIR 81 174 -88 248 226 215 45 chr12 112878066 112878288 -30908167 + L1MC/D LINE L1 5544 5801 -462 200 140 70 0 chr12 112878293 112878350 -30908105 + (TA)n Simple_repeat Simple_repeat 1 61 0 1526 139 87 49 chr12 112878367 112878654 -30907801 - AluJo SINE Alu -14 298 1 2201 99 7 0 chr12 112879056 112879349 -30907106 + AluSp SINE Alu 1 295 -18 1417 161 65 15 chr12 112879377 112879638 -30906817 + AluJo SINE Alu 6 279 -33 2319 81 3 13 chr12 112879657 112879955 -30906500 + AluSg SINE Alu 1 295 -15 398 300 40 0 chr12 112879968 112880068 -30906387 + L2 LINE L2 3169 3272 0 359 355 16 8 chr12 112880371 112880492 -30905963 + MIR3 SINE MIR 49 170 -38 811 274 41 8 chr12 112880843 112881088 -30905367 + MIR SINE MIR 10 262 0 329 286 25 25 chr12 112881099 112881218 -30905237 - MIR SINE MIR -140 122 4 291 271 82 33 chr12 112881665 112881787 -30904668 + MIR3 SINE MIR 44 171 -37 437 207 121 0 chr12 112881854 112881970 -30904485 + MIR SINE MIR 119 248 -14 2104 120 3 0 chr12 112882072 112882363 -30904092 + AluSx SINE Alu 1 292 -20 197 270 90 27 chr12 112882701 112882812 -30903643 + MIR SINE MIR 133 250 -12 181 227 40 93 chr12 112883010 112883085 -30903370 - L2 LINE L2 -66 3247 3177 218 313 66 71 chr12 112883251 112883449 -30903006 - L2 LINE L2 -4 3268 3072 1946 134 3 3 chr12 112883771 112884098 -30902357 + AluSx SINE Alu 1 327 0 1009 176 122 0 chr12 112884497 112884685 -30901770 + AluJo SINE Alu 85 295 -17 3072 151 34 2 chr12 112885177 112885669 -30900786 + L1MB3 LINE L1 5639 6151 -32 2422 82 0 0 chr12 112885669 112885962 -30900493 + AluSx SINE Alu 3 295 -17 3072 151 34 2 chr12 112885962 112885994 -30900461 + L1MB3 LINE L1 6151 6180 -3 1511 174 71 17 chr12 112886133 112886427 -30900028 + AluJo SINE Alu 1 310 -2 494 305 101 19 chr12 112886485 112886941 -30899514 + L1MEd LINE L1 926 1507 -983 961 300 43 20 chr12 112887444 112887634 -30898821 - MLT1J2 LTR MaLR 0 450 266 842 221 44 0 chr12 112887634 112887815 -30898640 + MER5A DNA MER1_type 1 189 0 961 300 43 20 chr12 112887815 112888064 -30898391 - MLT1J2 LTR MaLR -184 266 1 333 0 0 0 chr12 112888516 112888553 -30897902 + (T)n Simple_repeat Simple_repeat 1 37 0 244 354 20 46 chr12 112888623 112888818 -30897637 - L2 LINE L2 -3 3269 3080 21 36 0 0 chr12 112890357 112890385 -30896070 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr12 112890479 112890508 -30895947 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 23 33 0 0 chr12 112890541 112890571 -30895884 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 112891762 112891783 -30894672 + GC_rich Low_complexity Low_complexity 1 21 0 351 204 129 0 chr12 112892668 112892761 -30893694 - L2 LINE L2 -12 3260 3156 247 263 76 25 chr12 112893014 112893132 -30893323 - L1ME4a LINE L1 -3 6118 5995 493 250 70 8 chr12 112893633 112893761 -30892694 - MIR SINE MIR -82 180 45 318 307 61 9 chr12 112893767 112893881 -30892574 + MIR SINE MIR 10 129 -133 216 232 347 0 chr12 112894294 112894389 -30892066 + MIR SINE MIR 120 247 -15 1835 162 3 7 chr12 112895005 112895134 -30891321 + AluJb SINE Alu 3 131 -181 2375 101 0 7 chr12 112895134 112895441 -30891014 + AluSg SINE Alu 1 305 -5 1835 162 3 7 chr12 112895441 112895607 -30890848 + AluJb SINE Alu 131 297 -15 257 141 16 78 chr12 112895900 112895964 -30890491 + CT-rich Low_complexity Low_complexity 3 62 0 451 333 139 42 chr12 112895966 112896433 -30890022 - L2 LINE L2 -15 3257 2742 2122 128 20 3 chr12 112896709 112897015 -30889440 + AluSx SINE Alu 1 311 -1 460 247 93 52 chr12 112897089 112897283 -30889172 - MIR SINE MIR -41 221 20 2208 132 3 0 chr12 112897726 112898037 -30888418 + AluSx SINE Alu 1 312 0 1224 77 6 28 chr12 112898037 112898218 -30888237 + L1MA8 LINE L1 6115 6291 0 395 282 16 85 chr12 112898230 112898478 -30887977 - L2 LINE L2 -198 3074 2844 236 279 163 0 chr12 112898560 112898707 -30887748 - L2 LINE L2 -655 2659 2489 708 250 27 0 chr12 112899526 112899710 -30886745 + MIR SINE MIR 37 225 -37 292 289 0 24 chr12 112899694 112899777 -30886678 - MIR SINE MIR -181 81 1 * 311 333 41 53 chr12 112899893 112900139 -30886316 - L2 LINE L2 -392 2922 2680 1066 129 18 0 chr12 112900141 112900304 -30886151 + FRAM SINE Alu 1 166 -10 495 293 57 26 chr12 112900308 112900537 -30885918 - L2 LINE L2 -647 2667 2432 11544 196 58 37 chr12 112901723 112906878 -30879577 - L1MCa LINE L1 -1145 5281 20 743 213 97 124 chr12 112907076 112907456 -30878999 - MLT1J LTR MaLR -49 462 93 725 167 8 32 chr12 112907475 112907601 -30878854 + FLAM_A SINE Alu 1 123 -10 391 302 38 0 chr12 112908145 112908251 -30878204 - MIR3 SINE MIR -31 177 68 342 0 0 0 chr12 112908869 112908907 -30877548 + (TG)n Simple_repeat Simple_repeat 2 39 0 605 234 75 66 chr12 112908920 112909147 -30877308 + MIR SINE MIR 30 258 -4 466 236 103 67 chr12 112910258 112910453 -30876002 - MARNA DNA Mariner -219 367 166 2242 122 3 3 chr12 112910677 112910989 -30875466 - AluSx SINE Alu 0 312 1 221 256 12 73 chr12 112912459 112912541 -30873914 - MIR SINE MIR -74 188 112 247 320 0 0 chr12 112912751 112912829 -30873626 + L1ME LINE L1 5691 5768 -353 1196 262 47 21 chr12 112912868 112913353 -30873102 + L2 LINE L2 2585 3093 -220 2262 122 3 0 chr12 112913353 112913657 -30872798 - AluSx SINE Alu -7 305 1 1196 262 47 21 chr12 112913657 112913884 -30872571 + L2 LINE L2 3093 3313 0 1889 103 6 35 chr12 112914046 112914176 -30872279 + L1MA8 LINE L1 5989 6121 -170 2133 142 3 0 chr12 112914176 112914487 -30871968 + AluSx SINE Alu 1 312 0 1889 103 6 35 chr12 112914487 112914668 -30871787 + L1MA8 LINE L1 6121 6291 0 307 312 14 55 chr12 112914710 112914928 -30871527 - L2 LINE L2 -220 3052 2844 195 279 163 0 chr12 112915010 112915157 -30871298 - L2 LINE L2 -655 2659 2489 653 250 27 0 chr12 112915976 112916160 -30870295 + MIR SINE MIR 37 225 -37 268 289 0 24 chr12 112916144 112916227 -30870228 - MIR SINE MIR -181 81 1 * 254 342 25 55 chr12 112916343 112916580 -30869875 - L2 LINE L2 -392 2922 2693 1077 129 18 0 chr12 112916591 112916754 -30869701 + FRAM SINE Alu 1 166 -10 443 296 52 26 chr12 112916758 112916988 -30869467 - L2 LINE L2 -647 2667 2432 454 236 118 23 chr12 112917793 112918013 -30868442 - L1ME4a LINE L1 -233 5888 5648 2179 124 13 3 chr12 112918203 112918510 -30867945 + AluSx SINE Alu 1 310 -2 329 264 208 20 chr12 112918804 112919001 -30867454 + L3 LINE CR1 878 1111 -466 261 210 32 0 chr12 112919443 112919505 -30866950 - MIR SINE MIR -126 136 73 872 263 33 4 chr12 112919789 112920032 -30866423 - MIR SINE MIR 0 262 13 491 246 114 62 chr12 112920274 112920747 -30865708 - L2 LINE L2 -91 3222 2713 325 303 200 20 chr12 112921588 112921783 -30864672 - L2 LINE L2 -31 3241 3012 490 193 104 15 chr12 112921963 112922098 -30864357 + MER103 DNA DNA 15 161 -5 424 288 181 21 chr12 112922259 112922502 -30863953 - MARNA DNA Mariner -220 366 85 219 36 0 0 chr12 112922502 112922530 -30863925 + (A)n Simple_repeat Simple_repeat 1 28 0 2138 118 3 0 chr12 112923114 112923403 -30863052 + AluSx SINE Alu 1 290 -22 236 148 0 93 chr12 112923403 112923457 -30862998 + L1PA8A LINE L1 6082 6130 -1 470 304 31 0 chr12 112923781 112923942 -30862513 + L3 LINE CR1 1336 1501 -76 232 277 131 46 chr12 112924105 112924235 -30862220 + MER5A DNA MER1_type 1 141 -48 671 238 6 12 chr12 112924367 112924535 -30861920 + MIR SINE MIR 51 217 -45 437 284 14 27 chr12 112924541 112924689 -30861766 - MER5A DNA MER1_type -7 182 37 334 284 17 26 chr12 112924586 112924702 -30861753 + MER5A DNA MER1_type 64 178 -11 * 397 265 82 41 chr12 112924750 112924959 -30861496 + MIR SINE MIR 38 249 -13 2367 103 3 6 chr12 112925163 112925474 -30860981 + AluSg SINE Alu 1 310 0 228 225 0 0 chr12 112925864 112925904 -30860551 + polypyrimidine Low_complexity Low_complexity 1 40 0 336 64 0 0 chr12 112926168 112926215 -30860240 + (TC)n Simple_repeat Simple_repeat 2 48 0 306 0 0 0 chr12 112926215 112926249 -30860206 + (CA)n Simple_repeat Simple_repeat 1 34 0 2229 106 20 3 chr12 112926294 112926597 -30859858 + AluSq SINE Alu 1 308 -5 966 138 60 0 chr12 112926601 112926768 -30859687 + L1MC3 LINE L1 7593 7769 -16 235 146 36 0 chr12 112926797 112926852 -30859603 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 2532 81 0 0 chr12 112927083 112927390 -30859065 - AluSg SINE Alu -3 307 1 21 36 0 0 chr12 112927741 112927769 -30858686 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 112927787 112927809 -30858646 + AT_rich Low_complexity Low_complexity 1 22 0 349 200 63 42 chr12 112927950 112928045 -30858410 - L2 LINE L2 -35 3237 3141 387 202 16 65 chr12 112928449 112928573 -30857882 - MIR SINE MIR -13 249 132 637 278 146 17 chr12 112929482 112929823 -30856632 - MLT1J2 LTR MaLR -3 443 63 224 281 12 0 chr12 112930340 112930422 -30856033 - MIR SINE MIR -91 117 35 438 270 104 0 chr12 112930661 112930824 -30855631 + L2 LINE L2 3134 3313 0 2514 78 0 0 chr12 112930899 112931195 -30855260 + AluSc SINE Alu 1 296 -13 510 262 8 0 chr12 112931271 112931393 -30855062 + MIR SINE MIR 47 169 -93 453 240 146 6 chr12 112931954 112932125 -30854330 + L2 LINE L2 2335 2529 -785 421 254 212 0 chr12 112932897 112933086 -30853369 - MIR SINE MIR 0 262 34 214 200 33 17 chr12 112933707 112933767 -30852688 + MIR SINE MIR 188 248 -14 2031 103 17 17 chr12 112933780 112934072 -30852383 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr12 112935595 112935624 -30850831 + AT_rich Low_complexity Low_complexity 1 29 0 228 250 31 0 chr12 112935908 112935972 -30850483 + LTR33 LTR ERVL 1 66 -455 1418 173 14 29 chr12 112936494 112936772 -30849683 - MLT1C LTR MaLR 0 467 194 584 289 36 0 chr12 112936774 112936940 -30849515 - L1MDb LINE L1 -1962 4979 4808 2218 99 0 7 chr12 112936975 112937297 -30849158 - AluSq SINE Alu 0 320 1 1020 166 37 78 chr12 112937303 112937520 -30848935 - AluJo SINE Alu -21 291 84 514 189 11 89 chr12 112937539 112937729 -30848726 - L1MDb LINE L1 -2373 4568 4394 4191 240 59 36 chr12 112937734 112939049 -30847406 - L1MDb LINE L1 -2789 4152 2869 1722 180 3 23 chr12 112939049 112939354 -30847101 - AluJo SINE Alu -13 299 1 4191 240 59 36 chr12 112939354 112939417 -30847038 - L1MDb LINE L1 -4072 2869 2809 2865 16 0 0 chr12 112939417 112939728 -30846727 - AluY SINE Alu 0 311 1 4191 240 59 36 chr12 112939728 112940764 -30845691 - L1MDb LINE L1 -4132 2809 1689 1147 208 136 8 chr12 112940771 112941021 -30845434 + AluJo SINE Alu 1 282 -30 33 66 0 0 chr12 112941021 112941082 -30845373 + AT_rich Low_complexity Low_complexity 1 61 0 1859 189 199 17 chr12 112941086 112941679 -30844776 - L1MDb LINE L1 -4901 1522 822 1628 279 52 14 chr12 112941785 112942338 -30844117 - L1MDb LINE L1 -5825 598 25 298 239 92 46 chr12 112942333 112942463 -30843992 + L1ME4a LINE L1 5975 6110 -11 * 2192 136 0 0 chr12 112942803 112943112 -30843343 + AluSx SINE Alu 1 309 -3 470 261 23 0 chr12 112943196 112943326 -30843129 - L2 LINE L2 0 3313 3181 188 313 15 0 chr12 112943473 112943540 -30842915 - L2 LINE L2 0 3313 3246 339 130 0 0 chr12 112943821 112943875 -30842580 + (TG)n Simple_repeat Simple_repeat 2 55 0 574 260 86 7 chr12 112944029 112944254 -30842201 + MIR SINE MIR 5 248 -14 505 242 41 31 chr12 112944579 112944773 -30841682 - L2 LINE L2 -300 3013 2818 601 312 96 45 chr12 112944841 112945523 -30840932 - L2 LINE L2 -5 3267 2518 592 236 116 88 chr12 112945584 112946206 -30840249 + L1MC5 LINE L1 7293 7931 -30 203 289 66 0 chr12 112946230 112946306 -30840149 - L2 LINE L2 -884 2430 2350 295 278 178 45 chr12 112946506 112946806 -30839649 - L2 LINE L2 -1264 2050 1791 207 0 0 0 chr12 112946806 112946829 -30839626 + (TTG)n Simple_repeat Simple_repeat 2 24 0 295 278 178 45 chr12 112946829 112946871 -30839584 - L2 LINE L2 -1523 1791 1756 2124 117 7 3 chr12 112946871 112947161 -30839294 + AluSx SINE Alu 1 291 -21 295 278 178 45 chr12 112947161 112947514 -30838941 - L2 LINE L2 -1558 1756 1261 352 282 193 20 chr12 112948543 112948745 -30837710 - MIR SINE MIR -14 248 12 340 220 104 82 chr12 112948754 112948925 -30837530 - MIR SINE MIR -66 196 24 392 259 77 77 chr12 112951158 112951498 -30834957 + MER102b DNA MER1_type 1 340 -1 199 269 19 0 chr12 112952332 112952384 -30834071 - L2 LINE L2 -3 3310 3258 361 328 80 5 chr12 112952421 112952622 -30833833 - L2 LINE L2 -174 3139 2924 2225 111 7 7 chr12 112952806 112953112 -30833343 + AluSq SINE Alu 1 306 -7 330 254 115 33 chr12 112953227 112953349 -30833106 - MIR SINE MIR -98 164 33 28 0 0 0 chr12 112953560 112953588 -30832867 + AT_rich Low_complexity Low_complexity 1 28 0 652 284 55 5 chr12 112955737 112955955 -30830500 - MIR SINE MIR 0 262 34 201 74 0 0 chr12 112956021 112956048 -30830407 + (A)n Simple_repeat Simple_repeat 1 27 0 360 311 33 8 chr12 112956605 112956727 -30829728 - L2 LINE L2 -21 3251 3127 532 202 58 52 chr12 112957372 112957545 -30828910 + MIR SINE MIR 3 176 -86 2467 65 0 37 chr12 112957849 112958170 -30828285 + AluY SINE Alu 1 309 -2 183 238 0 0 chr12 112958238 112958280 -30828175 - MIR SINE MIR -130 132 91 * 234 224 53 40 chr12 112958267 112958343 -30828112 - L2 LINE L2 -1 3271 3195 2110 121 0 16 chr12 112959393 112959707 -30826748 - AluJb SINE Alu -3 309 1 180 195 26 117 chr12 112960405 112960482 -30825973 - L3 LINE CR1 -343 1234 1165 244 239 185 54 chr12 112963020 112963150 -30823305 - MIR SINE MIR 0 262 116 226 335 112 35 chr12 112963235 112963405 -30823050 - MIR SINE MIR -60 202 20 352 262 186 6 chr12 112963551 112963728 -30822727 + L1MEc LINE L1 1537 1743 -833 2185 90 35 3 chr12 112963760 112964048 -30822407 + AluSx SINE Alu 1 297 -15 398 212 40 50 chr12 112964083 112964182 -30822273 - MLT1G LTR MaLR 0 590 493 593 261 85 10 chr12 112964187 112964386 -30822069 - MLT1G LTR MaLR -367 223 10 2379 83 3 13 chr12 112964985 112965298 -30821157 + AluSg SINE Alu 1 310 0 2120 140 0 0 chr12 112967076 112967383 -30819072 - AluSx SINE Alu -5 307 1 534 248 7 15 chr12 112967412 112967549 -30818906 - L1MA10 LINE L1 -3 6331 6196 * 1261 184 35 21 chr12 112967542 112967830 -30818625 + L1 LINE L1 4756 5047 -1099 1199 244 118 56 chr12 112969793 112969879 -30816576 + L1M4 LINE L1 3627 3706 -2440 2219 117 0 0 chr12 112969879 112970170 -30816285 - AluSx SINE Alu -21 291 1 1199 244 118 56 chr12 112970170 112970710 -30815745 + L1M4 LINE L1 3706 4292 -1854 696 205 3 101 chr12 112970721 112971019 -30815436 - AluSg SINE Alu -15 295 27 1759 174 57 30 chr12 112971191 112971288 -30815167 + MER2 DNA MER2_type 2 95 -249 2292 103 0 3 chr12 112971288 112971590 -30814865 + AluSc SINE Alu 1 301 -8 1759 174 57 30 chr12 112971590 112971826 -30814629 + MER2 DNA MER2_type 95 344 0 22 0 0 0 chr12 112972309 112972331 -30814124 + AT_rich Low_complexity Low_complexity 1 22 0 1032 208 22 0 chr12 112973268 112973451 -30813004 - MER5A DNA MER1_type -2 187 1 392 313 269 5 chr12 112973770 112973971 -30812484 + MIR SINE MIR 8 261 -1 189 107 0 0 chr12 112974458 112974486 -30811969 + (T)n Simple_repeat Simple_repeat 1 28 0 436 177 0 0 chr12 112974545 112974607 -30811848 + AluJ/FLAM SINE Alu 2 63 -249 33 25 0 0 chr12 112974722 112974762 -30811693 + AT_rich Low_complexity Low_complexity 1 40 0 1372 164 36 14 chr12 112974795 112975076 -30811379 + L1MA4 LINE L1 6006 6292 -8 2335 88 3 7 chr12 112975227 112975534 -30810921 - AluSg SINE Alu -4 306 1 479 264 56 0 chr12 112975849 112975974 -30810481 + MIR SINE MIR 63 194 -68 713 224 14 42 chr12 112976019 112976233 -30810222 - L2 LINE L2 0 3313 3106 206 339 37 18 chr12 112976422 112976531 -30809924 + L2 LINE L2 3160 3270 -2 359 355 16 8 chr12 112976635 112976756 -30809699 + MIR3 SINE MIR 49 170 -38 811 274 41 8 chr12 112977106 112977351 -30809104 + MIR SINE MIR 10 262 0 329 286 25 25 chr12 112977362 112977481 -30808974 - MIR SINE MIR -140 122 4 291 271 82 33 chr12 112977928 112978050 -30808405 + MIR3 SINE MIR 44 171 -37 437 207 121 0 chr12 112978117 112978233 -30808222 + MIR SINE MIR 119 248 -14 220 149 21 21 chr12 112978238 112978285 -30808170 + (ATG)n Simple_repeat Simple_repeat 3 49 0 2104 120 3 0 chr12 112978334 112978625 -30807830 + AluSx SINE Alu 1 292 -20 197 270 90 27 chr12 112978963 112979074 -30807381 + MIR SINE MIR 133 250 -12 181 227 40 93 chr12 112979272 112979347 -30807108 - L2 LINE L2 -66 3247 3177 218 313 66 71 chr12 112979513 112979711 -30806744 - L2 LINE L2 -4 3268 3072 1946 134 3 3 chr12 112980033 112980360 -30806095 + AluSx SINE Alu 1 327 0 1009 176 122 0 chr12 112980759 112980947 -30805508 + AluJo SINE Alu 85 295 -17 3096 149 34 2 chr12 112981439 112981931 -30804524 + L1MB3 LINE L1 5639 6151 -32 2422 82 0 0 chr12 112981931 112982224 -30804231 + AluSx SINE Alu 3 295 -17 3096 149 34 2 chr12 112982224 112982256 -30804199 + L1MB3 LINE L1 6151 6180 -3 1511 174 71 17 chr12 112982395 112982689 -30803766 + AluJo SINE Alu 1 310 -2 494 305 101 19 chr12 112982747 112983203 -30803252 + L1MEd LINE L1 926 1507 -983 961 300 43 20 chr12 112983706 112983896 -30802559 - MLT1J2 LTR MaLR 0 450 266 821 226 44 0 chr12 112983896 112984077 -30802378 + MER5A DNA MER1_type 1 189 0 961 300 43 20 chr12 112984077 112984326 -30802129 - MLT1J2 LTR MaLR -184 266 1 333 0 0 0 chr12 112984778 112984815 -30801640 + (T)n Simple_repeat Simple_repeat 1 37 0 342 315 99 31 chr12 112984880 112985102 -30801353 - L2 LINE L2 0 3313 3077 21 36 0 0 chr12 112986616 112986644 -30799811 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr12 112986738 112986767 -30799688 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 23 33 0 0 chr12 112986800 112986830 -30799625 + AT_rich Low_complexity Low_complexity 1 30 0 201 74 0 0 chr12 112988173 112988200 -30798255 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 982 265 109 28 chr12 112988200 112988660 -30797795 - L2 LINE L2 -13 3300 2804 643 102 0 11 chr12 112988822 112988910 -30797545 + AluSg/x SINE Alu 209 295 -14 1144 166 34 15 chr12 112989026 112989231 -30797224 + MER3 DNA MER1_type 1 209 0 2345 103 42 21 chr12 112989344 112989674 -30796781 - MER1B DNA MER1_type 0 337 1 1864 148 14 0 chr12 112989778 112990095 -30796360 - AluJb SINE Alu 0 321 1 457 230 201 0 chr12 112990162 112990313 -30796142 + MER5A DNA MER1_type 4 189 0 627 234 120 6 chr12 112990325 112990483 -30795972 + MIR SINE MIR 32 207 -55 199 280 0 0 chr12 112990523 112990573 -30795882 - L2 LINE L2 0 3313 3264 351 204 129 0 chr12 112991222 112991315 -30795140 - L2 LINE L2 -12 3260 3156 247 263 76 25 chr12 112991568 112991686 -30794769 - L1ME4a LINE L1 -3 6118 5995 493 250 70 8 chr12 112992187 112992315 -30794140 - MIR SINE MIR -82 180 45 318 307 61 9 chr12 112992321 112992435 -30794020 + MIR SINE MIR 10 129 -133 216 232 347 0 chr12 112992848 112992943 -30793512 + MIR SINE MIR 120 247 -15 1835 162 3 7 chr12 112993559 112993688 -30792767 + AluJb SINE Alu 3 131 -181 2375 101 0 7 chr12 112993688 112993995 -30792460 + AluSg SINE Alu 1 305 -5 1835 162 3 7 chr12 112993995 112994161 -30792294 + AluJb SINE Alu 131 297 -15 257 141 16 78 chr12 112994454 112994518 -30791937 + CT-rich Low_complexity Low_complexity 3 62 0 451 333 139 42 chr12 112994520 112994987 -30791468 - L2 LINE L2 -15 3257 2742 2122 128 20 3 chr12 112995263 112995569 -30790886 + AluSx SINE Alu 1 311 -1 460 247 93 52 chr12 112995643 112995837 -30790618 - MIR SINE MIR -41 221 20 2135 105 10 23 chr12 112996279 112996416 -30790039 + AluSx SINE Alu 1 138 -174 2404 91 0 3 chr12 112996416 112996723 -30789732 + AluSc SINE Alu 1 306 -3 2135 105 10 23 chr12 112996723 112996891 -30789564 + AluSx SINE Alu 138 302 -10 212 200 55 0 chr12 112997394 112997451 -30789004 - MIR SINE MIR -115 93 36 2326 110 0 19 chr12 112997808 112998125 -30788330 + AluSx SINE Alu 1 311 -1 215 125 25 0 chr12 112998147 112998187 -30788268 + A-rich Low_complexity Low_complexity 4 44 0 207 0 0 0 chr12 112998534 112998557 -30787898 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8321 17 0 0 chr12 112998557 112999954 -30786501 - L1PA3 LINE L1 -8 6147 4751 320 336 129 39 chr12 113000551 113001174 -30785281 + L2 LINE L2 2566 3240 -32 185 282 0 0 chr12 113001193 113001232 -30785223 - L2 LINE L2 -24 3248 3210 419 221 44 66 chr12 113001971 113002107 -30784348 - L2 LINE L2 -2 3270 3138 199 125 62 0 chr12 113002487 113002519 -30783936 + MIR SINE MIR 112 145 -117 455 296 50 30 chr12 113002650 113002722 -30783733 - MIR SINE MIR -37 225 156 1856 153 3 0 chr12 113002722 113003004 -30783451 - AluJb SINE Alu -24 288 6 455 296 50 30 chr12 113003004 113003130 -30783325 - MIR SINE MIR -106 156 23 777 186 197 5 chr12 113004199 113004392 -30782063 + MIR SINE MIR 11 240 -22 524 255 21 35 chr12 113004456 113004597 -30781858 + L2 LINE L2 3134 3272 0 415 289 58 32 chr12 113004599 113004755 -30781700 + MIR3 SINE MIR 49 208 0 290 238 75 0 chr12 113004768 113004848 -30781607 - MIR SINE MIR 0 262 177 1713 163 0 49 chr12 113004873 113005179 -30781276 + AluJb SINE Alu 11 301 -11 579 271 14 0 chr12 113006424 113006568 -30779887 + MIR3 SINE MIR 49 194 -14 621 317 54 63 chr12 113006571 113007016 -30779439 - L2 LINE L2 -5 3267 2827 224 29 0 29 chr12 113009105 113009139 -30777316 + (TAA)n Simple_repeat Simple_repeat 1 33 0 193 255 21 0 chr12 113012325 113012372 -30774083 + MIR SINE MIR 76 123 -85 1650 117 131 28 chr12 113012790 113013072 -30773383 + AluJo SINE Alu 1 311 -1 624 137 58 153 chr12 113013397 113013461 -30772994 + MER5B DNA MER1_type 1 69 -109 1698 180 18 0 chr12 113013461 113013744 -30772711 + AluJo SINE Alu 1 288 -24 624 137 58 153 chr12 113013744 113013869 -30772586 + MER5B DNA MER1_type 69 172 -6 280 278 50 2 chr12 113014951 113015045 -30771410 - MIR SINE MIR -57 151 53 710 180 36 0 chr12 113015052 113015163 -30771292 + FLAM_C SINE Alu 3 117 -16 271 289 83 32 chr12 113016487 113016643 -30769812 - MIR SINE MIR -6 256 93 249 286 0 0 chr12 113016773 113016822 -30769633 - MIR SINE MIR -140 68 20 208 188 29 87 chr12 113017118 113017187 -30769268 - L3 LINE CR1 -4 1573 1509 21 0 0 0 chr12 113017723 113017744 -30768711 + AT_rich Low_complexity Low_complexity 1 21 0 2143 136 0 0 chr12 113017838 113018139 -30768316 - AluSx SINE Alu -11 301 1 2301 90 7 10 chr12 113018181 113018481 -30767974 - AluSp SINE Alu -14 299 1 565 269 0 0 chr12 113018601 113018720 -30767735 + MER5B DNA MER1_type 1 119 -59 236 299 0 46 chr12 113018835 113018922 -30767533 - MIR3 SINE MIR -7 201 119 316 294 125 15 chr12 113019753 113019889 -30766566 + MIR3 SINE MIR 33 183 -25 228 298 97 26 chr12 113020260 113020374 -30766081 + MIR SINE MIR 99 220 -42 228 236 55 0 chr12 113020483 113020538 -30765917 + L2 LINE L2 3210 3267 -5 193 349 57 28 chr12 113020562 113020668 -30765787 + L2 LINE L2 3200 3308 -5 259 234 216 36 chr12 113020822 113020933 -30765522 + MIR3 SINE MIR 15 145 -63 498 191 70 9 chr12 113020952 113021067 -30765388 + L2 LINE L2 3189 3310 -3 192 281 35 0 chr12 113021069 113021126 -30765329 + MIR SINE MIR 176 234 -28 281 301 0 0 chr12 113021226 113021300 -30765155 + MIR SINE MIR 45 118 -90 195 188 0 0 chr12 113022230 113022278 -30764177 + GA-rich Low_complexity Low_complexity 4 51 0 462 235 29 52 chr12 113022911 113023047 -30763408 - MIR SINE MIR -60 202 70 415 158 167 50 chr12 113023096 113023216 -30763239 - MIR SINE MIR -54 208 75 472 291 101 28 chr12 113023625 113023804 -30762651 - MIR SINE MIR -70 192 1 229 240 0 0 chr12 113024039 113024089 -30762366 - L2 LINE L2 0 3313 3264 1417 180 46 18 chr12 113024492 113024775 -30761680 - AluJb SINE Alu -20 292 2 669 294 52 20 chr12 113025227 113025479 -30760976 + MIR SINE MIR 2 261 -1 1015 215 58 5 chr12 113025506 113025729 -30760726 + MIR SINE MIR 22 256 -6 183 42 0 0 chr12 113026040 113026064 -30760391 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 344 259 114 75 chr12 113026108 113026336 -30760119 - MIR SINE MIR -10 252 16 1280 169 8 153 chr12 113026394 113026536 -30759919 + MER2 DNA MER2_type 1 162 -183 2199 100 3 3 chr12 113026536 113026826 -30759629 - AluSp SINE Alu -23 290 1 1280 169 8 153 chr12 113026826 113026847 -30759608 + MER2 DNA MER2_type 162 184 -161 2163 128 0 0 chr12 113026847 113027145 -30759310 - AluSx SINE Alu -14 298 1 1280 169 8 153 chr12 113027145 113027359 -30759096 + MER2 DNA MER2_type 184 324 -21 678 118 126 74 chr12 113027482 113027617 -30758838 - FLAM_C SINE Alu 0 143 2 211 255 0 0 chr12 113027758 113027805 -30758650 - MIR3 SINE MIR -32 176 130 341 316 8 26 chr12 113028508 113028625 -30757830 - MIR SINE MIR -128 134 20 775 186 16 0 chr12 113028735 113028859 -30757596 - FLAM_C SINE Alu -7 126 1 208 250 0 0 chr12 113029605 113029649 -30756806 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr12 113029652 113029675 -30756780 + AT_rich Low_complexity Low_complexity 1 23 0 517 270 34 52 chr12 113029778 113030016 -30756439 - L1MC/D LINE L1 -468 5653 5529 505 211 119 62 chr12 113030809 113031003 -30755452 - MIR SINE MIR -8 254 50 377 343 56 81 chr12 113031146 113031505 -30754950 + L2 LINE L2 2825 3174 -98 1504 162 63 15 chr12 113032001 113032272 -30754183 - AluJo SINE Alu -28 284 1 336 372 126 31 chr12 113032855 113033180 -30753275 + L2 LINE L2 2915 3270 -2 261 300 92 25 chr12 113033272 113033392 -30753063 + MER5B DNA MER1_type 1 128 -50 261 0 0 0 chr12 113033395 113033424 -30753031 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 297 0 0 0 chr12 113033423 113033456 -30752999 + (TG)n Simple_repeat Simple_repeat 2 34 0 1307 225 71 0 chr12 113033473 113033740 -30752715 - AluJo SINE Alu -26 286 1 2560 65 0 0 chr12 113033749 113034055 -30752400 - AluY SINE Alu -5 306 1 953 265 140 9 chr12 113034084 113034427 -30752028 + L1MC4a LINE L1 5511 5898 -1910 2281 126 9 14 chr12 113035111 113035460 -30750995 - THE1A LTR MaLR -8 347 1 12680 85 6 1 chr12 113035460 113037031 -30749424 - THE1A-int LTR MaLR 0 1580 2 2160 126 86 3 chr12 113037034 113037360 -30749095 - THE1A LTR MaLR -2 353 1 285 326 31 0 chr12 113037675 113037773 -30748682 - MIR SINE MIR -99 163 63 202 272 304 0 chr12 113038542 113038634 -30747821 + L2 LINE L2 3193 3312 -1 4856 237 108 33 chr12 113040090 113040263 -30746192 + L1MB7 LINE L1 1 160 -6978 952 201 0 6 chr12 113040263 113040422 -30746033 + FRAM SINE Alu 1 158 -8 4856 237 108 33 chr12 113040422 113042629 -30743826 + L1MB7 LINE L1 160 2702 -4436 422 269 92 48 chr12 113042644 113042868 -30743587 + L1MEc LINE L1 1731 1976 -4420 3829 102 76 22 chr12 113042868 113043449 -30743006 - LTR9 LTR ERV1 0 612 1 422 269 92 48 chr12 113043449 113043559 -30742896 + L1MEc LINE L1 1976 2080 -4316 4575 190 118 11 chr12 113043563 113043862 -30742593 + L1MB7 LINE L1 5256 5522 -1473 885 118 0 76 chr12 113043862 113044006 -30742449 + AluJo SINE Alu 1 133 -169 4575 190 118 11 chr12 113044006 113045284 -30741171 + L1MB7 LINE L1 5522 6994 -1 655 245 98 1 chr12 113045319 113045519 -30740936 - MIR SINE MIR -41 221 7 282 290 170 0 chr12 113045945 113046045 -30740410 - MIR SINE MIR -56 152 36 427 294 41 24 chr12 113046122 113046292 -30740163 - L3 LINE CR1 -62 1515 1343 181 319 0 0 chr12 113046922 113046969 -30739486 - L2 LINE L2 -16 3297 3251 * 392 272 97 42 chr12 113046937 113047159 -30739296 - MIR SINE MIR -25 237 9 242 287 185 38 chr12 113047216 113047373 -30739082 - MIR SINE MIR -82 180 1 1413 179 35 112 chr12 113047462 113047762 -30738693 - MLT1A2 LTR MaLR 0 374 111 2379 124 119 13 chr12 113047762 113048149 -30738306 - MSTA LTR MaLR 0 428 1 1413 179 35 112 chr12 113048149 113048250 -30738205 - MLT1A2 LTR MaLR -263 111 4 234 0 0 0 chr12 113050141 113050167 -30736288 + (T)n Simple_repeat Simple_repeat 1 26 0 339 284 69 17 chr12 113050326 113050442 -30736013 + MIR SINE MIR 19 140 -68 1604 180 10 29 chr12 113050533 113050844 -30735611 + AluJo SINE Alu 1 305 -7 371 268 73 8 chr12 113051502 113051625 -30734830 - MIR SINE MIR -65 197 67 336 142 157 127 chr12 113051714 113051803 -30734652 - MIR SINE MIR 0 262 166 2140 92 26 23 chr12 113051803 113052108 -30734347 - AluSx SINE Alu -1 311 6 336 142 157 127 chr12 113052108 113052152 -30734303 - MIR SINE MIR -96 166 125 629 312 47 44 chr12 113052814 113052962 -30733493 + L2 LINE L2 2400 2546 -768 877 206 38 0 chr12 113052962 113053122 -30733333 + AluJo SINE Alu 137 302 0 629 312 47 44 chr12 113053122 113053313 -30733142 + L2 LINE L2 2546 2740 -574 1056 291 214 25 chr12 113053314 113053540 -30732915 + L2 LINE L2 1597 1779 -1535 2293 96 10 6 chr12 113053540 113053852 -30732603 - AluSp SINE Alu 0 313 1 1056 291 214 25 chr12 113053852 113054160 -30732295 + L2 LINE L2 1779 2028 -1286 2089 121 10 0 chr12 113054160 113054457 -30731998 + AluSg SINE Alu 6 305 -5 1056 291 214 25 chr12 113054457 113054759 -30731696 + L2 LINE L2 2028 2592 -722 371 257 60 129 chr12 113054841 113055320 -30731135 - MLT1J2 LTR MaLR 0 450 1 225 234 21 0 chr12 113055362 113055409 -30731046 - MER2 DNA MER2_type -25 320 273 2407 84 3 0 chr12 113055409 113055707 -30730748 + AluSx SINE Alu 1 299 -13 1283 160 19 0 chr12 113055757 113055963 -30730492 - MER2 DNA MER2_type -134 211 2 500 229 256 23 chr12 113056068 113056330 -30730125 - MER5C DNA MER1_type 0 324 2 24 32 0 0 chr12 113056427 113056458 -30729997 + AT_rich Low_complexity Low_complexity 1 31 0 190 388 38 0 chr12 113056750 113056830 -30729625 + MIR SINE MIR 30 112 -150 2315 98 7 3 chr12 113056847 113057154 -30729301 + AluSx SINE Alu 1 308 -4 1665 144 21 11 chr12 113057303 113057587 -30728868 - L1MA4 LINE L1 -8 6292 6006 33 25 0 0 chr12 113057620 113057660 -30728795 + AT_rich Low_complexity Low_complexity 1 40 0 389 206 0 0 chr12 113057776 113057839 -30728616 - AluJ/FLAM SINE Alu -239 63 1 189 107 0 0 chr12 113057897 113057925 -30728530 + (A)n Simple_repeat Simple_repeat 1 28 0 392 313 269 5 chr12 113058412 113058613 -30727842 - MIR SINE MIR -1 261 8 1032 208 22 0 chr12 113058932 113059115 -30727340 + MER5A DNA MER1_type 1 187 -2 22 0 0 0 chr12 113060052 113060074 -30726381 + AT_rich Low_complexity Low_complexity 1 22 0 1759 174 57 30 chr12 113060558 113060794 -30725661 - MER2 DNA MER2_type 0 344 95 2292 103 0 3 chr12 113060794 113061096 -30725359 - AluSc SINE Alu -8 301 1 1759 174 57 30 chr12 113061096 113061193 -30725262 - MER2 DNA MER2_type -249 95 2 261 304 55 75 chr12 113064731 113064932 -30721523 - L2 LINE L2 0 3313 3117 2470 55 0 19 chr12 113065144 113065451 -30721004 + AluY SINE Alu 1 301 -10 344 241 43 17 chr12 113065659 113065775 -30720680 - L1ME4a LINE L1 0 6121 6003 2403 74 10 0 chr12 113065775 113066071 -30720384 - AluSg SINE Alu -11 299 1 1417 161 65 15 chr12 113066090 113066351 -30720104 - AluJo SINE Alu -33 279 6 2201 99 7 0 chr12 113066379 113066672 -30719783 - AluSp SINE Alu -18 295 1 1526 139 87 49 chr12 113067074 113067361 -30719094 + AluJo SINE Alu 1 298 -14 38 39 0 0 chr12 113067383 113067435 -30719020 + AT_rich Low_complexity Low_complexity 1 52 0 248 274 94 0 chr12 113067556 113067662 -30718793 - L1ME LINE L1 -462 5659 5544 284 278 44 0 chr12 113068730 113068820 -30717635 - MIR SINE MIR -88 174 81 1683 243 98 48 chr12 113068904 113069407 -30717048 + L1ME3A LINE L1 4787 5264 -906 2540 71 0 0 chr12 113069407 113069715 -30716740 + AluY SINE Alu 4 311 0 1683 243 98 48 chr12 113069715 113070175 -30716280 + L1ME3A LINE L1 5264 5814 -356 243 200 113 12 chr12 113070177 113070257 -30716198 - MER5C DNA MER1_type -6 318 231 406 314 16 0 chr12 113070268 113070389 -30716066 - MER5C DNA MER1_type -201 123 1 931 253 120 25 chr12 113070395 113070711 -30715744 + L1ME3A LINE L1 5808 6153 -17 188 353 59 0 chr12 113070853 113070938 -30715517 - L2 LINE L2 -266 3047 2958 2384 83 0 3 chr12 113071292 113071593 -30714862 - AluSq SINE Alu -13 300 1 221 361 59 8 chr12 113071819 113071938 -30714517 - MIR SINE MIR -50 212 88 2210 103 0 35 chr12 113072221 113072533 -30713922 + AluSq SINE Alu 1 301 -12 776 261 28 19 chr12 113073716 113073927 -30712528 - MIR SINE MIR 0 262 50 42 17 0 17 chr12 113074061 113074079 -30712376 + AT_rich Low_complexity Low_complexity 1 18 -41 2005 128 3 7 chr12 113074079 113074368 -30712087 + AluSx SINE Alu 1 288 -24 42 17 0 17 chr12 113074368 113074409 -30712046 + AT_rich Low_complexity Low_complexity 18 59 0 1808 144 49 3 chr12 113074413 113074698 -30711757 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr12 113075636 113075660 -30710795 + AT_rich Low_complexity Low_complexity 1 24 0 420 175 167 8 chr12 113077230 113077350 -30709105 - L1MB3 LINE L1 0 6183 6045 1493 192 28 9 chr12 113077589 113077907 -30708548 - L1 LINE L1 -1295 4851 4528 308 359 120 0 chr12 113077957 113078074 -30708381 - L2 LINE L2 -19 3253 3123 194 182 11 125 chr12 113078327 113078415 -30708040 + L2 LINE L2 3047 3124 -189 1180 266 30 75 chr12 113079538 113079916 -30706539 + L2 LINE L2 2844 3196 -117 1958 110 4 0 chr12 113079916 113080189 -30706266 + AluSx SINE Alu 24 297 -15 1180 266 30 75 chr12 113080189 113080302 -30706153 + L2 LINE L2 3196 3313 0 343 238 130 16 chr12 113080710 113080895 -30705560 - Charlie7 DNA MER1_type 0 2612 2407 2287 114 3 0 chr12 113080927 113081226 -30705229 + AluSx SINE Alu 1 300 -12 481 234 9 0 chr12 113081231 113081341 -30705114 - Charlie7 DNA MER1_type -1851 761 651 2262 163 33 5 chr12 113081341 113081733 -30704722 + MSTB LTR MaLR 1 403 -23 1657 234 87 80 chr12 113081715 113082309 -30704146 - Charlie7 DNA MER1_type -1931 681 80 * 2583 62 0 3 chr12 113082309 113082617 -30703838 + AluY SINE Alu 1 307 -4 1657 234 87 80 chr12 113082617 113082698 -30703757 - Charlie7 DNA MER1_type -2532 80 1 297 377 0 9 chr12 113082698 113082812 -30703643 + L2 LINE L2 1791 1903 -1411 409 228 152 14 chr12 113083050 113083195 -30703260 - MIR SINE MIR -15 247 83 207 257 186 0 chr12 113083255 113083325 -30703130 + L2 LINE L2 3230 3312 -1 3032 249 161 18 chr12 113083507 113084679 -30701776 + L2 LINE L2 1728 3068 -245 2059 93 4 4 chr12 113084689 113084957 -30701498 + AluSg SINE Alu 1 268 -42 448 285 49 0 chr12 113085083 113085227 -30701228 + L1M4 LINE L1 4034 4184 -1962 610 202 16 8 chr12 113085229 113085358 -30701097 + MLT1C LTR MaLR 194 323 -144 25 0 0 0 chr12 113086551 113086576 -30699879 + AT_rich Low_complexity Low_complexity 1 25 0 2120 140 0 0 chr12 113086585 113086892 -30699563 - AluSx SINE Alu -5 307 1 534 248 7 15 chr12 113086921 113087058 -30699397 - L1MA10 LINE L1 -3 6331 6196 * 1466 171 35 7 chr12 113087051 113087337 -30699118 + L1MA9 LINE L1 4756 5049 -1097 983 188 24 0 chr12 113087339 113087504 -30698951 + AluJb SINE Alu 131 299 -13 4278 165 45 47 chr12 113087533 113088664 -30697791 + L1MA9 LINE L1 5043 6165 -147 1800 151 21 7 chr12 113088691 113088970 -30697485 + AluJb SINE Alu 5 287 -25 2060 68 0 0 chr12 113092449 113092698 -30693757 + AluY SINE Alu 56 304 -7 1086 283 153 14 chr12 113093061 113093824 -30692631 - L2 LINE L2 -2 3311 2443 3346 254 169 26 chr12 113093848 113095278 -30691177 + L2 LINE L2 806 2440 -874 250 412 0 0 chr12 113096660 113096762 -30689693 + C-rich Low_complexity Low_complexity 1 102 0 21 36 0 0 chr12 113096766 113096794 -30689661 + AT_rich Low_complexity Low_complexity 1 28 0 306 336 78 73 chr12 113096798 113097223 -30689232 + L1M2 LINE L1 897 1323 -5526 21 81 0 0 chr12 113097234 113097271 -30689184 + GC_rich Low_complexity Low_complexity 1 37 0 287 243 35 49 chr12 113097340 113097484 -30688971 + (CCCCG)n Simple_repeat Simple_repeat 1 142 0 239 365 0 42 chr12 113097995 113098091 -30688364 + C-rich Low_complexity Low_complexity 1 92 0 30 0 0 0 chr12 113098144 113098174 -30688281 + AT_rich Low_complexity Low_complexity 1 30 0 60 206 0 0 chr12 113098174 113098276 -30688179 + GC_rich Low_complexity Low_complexity 1 102 0 293 177 48 57 chr12 113098292 113098327 -30688128 + G-rich Low_complexity Low_complexity 6 40 -88 217 68 45 0 chr12 113098327 113098371 -30688084 + (CCGCG)n Simple_repeat Simple_repeat 2 47 0 293 177 48 57 chr12 113098371 113098459 -30687996 + G-rich Low_complexity Low_complexity 40 128 0 32 29 0 0 chr12 113098459 113098493 -30687962 + GC_rich Low_complexity Low_complexity 1 34 0 262 167 42 17 chr12 113098493 113098613 -30687842 + (CGCGG)n Simple_repeat Simple_repeat 4 126 0 218 153 19 64 chr12 113098594 113098751 -30687704 + (CGG)n Simple_repeat Simple_repeat 3 152 0 * 231 212 30 61 chr12 113098754 113098886 -30687569 + (CGCGG)n Simple_repeat Simple_repeat 4 131 0 290 176 39 39 chr12 113098894 113099047 -30687408 + (CGGG)n Simple_repeat Simple_repeat 4 156 0 188 290 23 107 chr12 113099228 113099262 -30687193 + MIR SINE MIR 116 151 -111 2058 120 3 10 chr12 113099262 113099563 -30686892 + AluSx SINE Alu 1 299 -13 188 290 23 107 chr12 113099563 113099659 -30686796 + MIR SINE MIR 151 235 -27 246 62 0 0 chr12 113099786 113099818 -30686637 + (TA)n Simple_repeat Simple_repeat 1 32 0 1680 153 3 44 chr12 113099824 113100118 -30686337 - AluJb SINE Alu -30 282 1 335 132 15 0 chr12 113100181 113100249 -30686206 + CT-rich Low_complexity Low_complexity 1 69 0 2672 140 9 82 chr12 113100411 113100961 -30685494 + L1MB8 LINE L1 5574 6083 -95 1744 181 7 0 chr12 113101657 113101949 -30684506 + AluJo SINE Alu 1 294 -18 453 62 0 0 chr12 113102158 113102223 -30684232 + (TG)n Simple_repeat Simple_repeat 2 66 0 379 322 42 0 chr12 113103168 113103311 -30683144 - MIR SINE MIR -12 250 102 194 279 75 122 chr12 113103451 113103598 -30682857 - MIR3 SINE MIR -64 144 5 236 341 131 33 chr12 113104141 113104355 -30682100 - L2 LINE L2 -8 3264 3030 349 289 20 86 chr12 113104402 113104554 -30681901 + MIR SINE MIR 102 243 -19 289 279 231 30 chr12 113104561 113104830 -30681625 - L2 LINE L2 -187 3126 2804 21 0 0 0 chr12 113106091 113106112 -30680343 + AT_rich Low_complexity Low_complexity 1 21 0 691 306 159 35 chr12 113106540 113107259 -30679196 - L2 LINE L2 0 3313 2508 367 270 191 43 chr12 113107271 113107501 -30678954 + L1MEd LINE L1 859 1122 -4997 2336 95 0 3 chr12 113107510 113107804 -30678651 - AluSp SINE Alu -20 293 1 180 0 0 0 chr12 113108041 113108061 -30678394 + (T)n Simple_repeat Simple_repeat 1 20 0 369 240 70 0 chr12 113108075 113108175 -30678280 - MER20B DNA MER1_type -194 589 483 1015 299 111 20 chr12 113109380 113109921 -30676534 + MLT1L LTR MaLR 18 607 -8 574 280 108 9 chr12 113110843 113111057 -30675398 - MIR SINE MIR 0 262 28 877 320 71 27 chr12 113111810 113112288 -30674167 - LTR33 LTR ERVL -22 499 1 348 214 11 34 chr12 113112669 113112758 -30673697 + MLT1J1 LTR MaLR 63 149 -297 445 232 146 20 chr12 113112839 113112990 -30673465 + MLT1J2 LTR MaLR 263 432 -18 694 219 34 58 chr12 113113149 113113354 -30673101 - L1MC4a LINE L1 -1953 5855 5656 1116 237 101 50 chr12 113113361 113113700 -30672755 + L2 LINE L2 2705 3025 -288 1757 166 7 7 chr12 113113700 113113990 -30672465 - AluJb SINE Alu -22 290 1 1116 237 101 50 chr12 113113990 113114197 -30672258 + L2 LINE L2 3025 3276 -37 2081 151 27 3 chr12 113114197 113114529 -30671926 - MER2 DNA MER2_type -1 343 4 1116 237 101 50 chr12 113114529 113114570 -30671885 + L2 LINE L2 3276 3313 0 363 257 115 27 chr12 113115457 113115605 -30670850 + MIR SINE MIR 52 212 -50 274 220 0 0 chr12 113116123 113116173 -30670282 - MIR3 SINE MIR -48 160 111 431 237 66 38 chr12 113116368 113116551 -30669904 - MLT1J LTR MaLR -332 179 1 235 156 0 0 chr12 113116551 113116596 -30669859 + L2 LINE L2 3266 3310 -3 2012 141 68 8 chr12 113116691 113117045 -30669410 - THE1C LTR MaLR 0 375 1 259 348 29 14 chr12 113117707 113117845 -30668610 + MIR3 SINE MIR 30 169 -39 227 308 32 32 chr12 113118065 113118221 -30668234 - L1ME LINE L1 -193 5928 5773 1297 289 68 16 chr12 113118221 113118961 -30667494 + L2 LINE L2 2453 3231 -82 203 304 99 12 chr12 113119178 113119339 -30667116 - L2 LINE L2 -640 2674 2500 363 121 0 0 chr12 113119637 113119695 -30666760 + (GA)n Simple_repeat Simple_repeat 1 58 0 241 109 36 0 chr12 113119696 113119751 -30666704 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 264 175 0 37 chr12 113119825 113119902 -30666553 - MIR SINE MIR -63 145 91 487 259 212 6 chr12 113119931 113120101 -30666354 - MIR SINE MIR -11 251 47 1257 176 0 5 chr12 113120876 113121080 -30665375 + AluJo SINE Alu 85 287 -25 365 241 59 24 chr12 113122933 113123069 -30663386 - MLT1K LTR MaLR -2 586 469 237 139 0 0 chr12 113123091 113123134 -30663321 - L2 LINE L2 -35 3237 3195 717 198 15 5 chr12 113123153 113123289 -30663166 + MLT1G1 LTR MaLR 403 581 -14 946 174 152 131 chr12 113123312 113123754 -30662701 - LTR49 LTR ERV1 0 595 145 336 302 78 8 chr12 113123902 113124031 -30662424 + L2 LINE L2 3176 3313 0 289 345 79 6 chr12 113124844 113125021 -30661434 + MIR3 SINE MIR 16 205 -3 579 110 11 0 chr12 113125345 113125436 -30661019 - L1MA4 LINE L1 -11 6289 6198 3145 153 4 10 chr12 113125465 113125987 -30660468 + LTR44 LTR ERV1 1 519 0 1934 176 24 49 chr12 113126616 113127041 -30659414 + MLT2D LTR ERVL 1 414 0 2189 228 69 42 chr12 113127854 113128586 -30657869 - L2 LINE L2 -870 2444 1688 2224 106 0 0 chr12 113128586 113128888 -30657567 + AluSq SINE Alu 1 302 0 2189 228 69 42 chr12 113128888 113128925 -30657530 - L2 LINE L2 -1626 1688 1653 388 248 38 0 chr12 113128937 113129042 -30657413 - L1ME LINE L1 -320 5801 5693 259 193 70 44 chr12 113129089 113129197 -30657258 - MLT1K LTR MaLR -340 248 144 341 247 176 39 chr12 113129291 113129546 -30656909 - L1ME LINE L1 -412 5709 5420 270 0 0 0 chr12 113129741 113129771 -30656684 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2449 42 0 0 chr12 113129780 113130067 -30656388 - L1PA5 LINE L1 -20 6134 5848 238 276 0 104 chr12 113130502 113130636 -30655819 - L2 LINE L2 -1421 1893 1774 255 256 154 0 chr12 113131321 113131399 -30655056 + L2 LINE L2 3180 3269 -44 725 206 15 0 chr12 113131504 113131640 -30654815 + MLT1A1 LTR MaLR 1 138 -227 535 250 0 10 chr12 113131640 113131744 -30654711 + MSTB LTR MaLR 1 103 -323 314 254 15 0 chr12 113131753 113131820 -30654635 + MST-int LTR MaLR 2 69 -1582 8618 98 9 2 chr12 113131830 113133091 -30653364 + L1P LINE L1 2325 3594 -2552 1799 108 123 4 chr12 113133480 113133757 -30652698 + AluY SINE Alu 1 310 -1 1856 187 81 79 chr12 113133849 113134368 -30652087 + MLT2B1 LTR ERVL 1 520 0 186 306 0 0 chr12 113134989 113135061 -30651394 + C-rich Low_complexity Low_complexity 1 72 0 426 330 6 16 chr12 113135080 113135262 -30651193 + C-rich Low_complexity Low_complexity 1 180 0 344 266 188 5 chr12 113135493 113135700 -30650755 + HAL1b LINE L1 1018 1262 -86 1943 133 7 36 chr12 113135712 113136020 -30650435 - AluJb SINE Alu -13 299 1 1579 153 0 50 chr12 113136048 113136329 -30650126 - AluJb SINE Alu -8 304 38 808 214 107 11 chr12 113136372 113136559 -30649896 + MER58C DNA MER1_type 10 214 -1 539 247 167 16 chr12 113137299 113137485 -30648970 + MER58A DNA MER1_type 2 215 -9 466 281 96 0 chr12 113137648 113137826 -30648629 + LTR33A LTR ERVL 329 523 0 397 216 45 0 chr12 113137856 113137944 -30648511 - MIR SINE MIR -88 174 83 24 32 0 0 chr12 113137987 113138018 -30648437 + AT_rich Low_complexity Low_complexity 1 31 0 1844 148 22 0 chr12 113138028 113138298 -30648157 - AluJo SINE Alu -36 276 1 22 0 0 0 chr12 113138301 113138323 -30648132 + AT_rich Low_complexity Low_complexity 1 22 0 608 201 97 0 chr12 113138349 113138493 -30647962 + L1ME3A LINE L1 6008 6165 -5 221 298 75 0 chr12 113138663 113138757 -30647698 - L2 LINE L2 -36 3277 3177 1101 68 0 0 chr12 113139181 113139313 -30647142 - AluY SINE Alu -11 300 169 2065 140 6 12 chr12 113139499 113139841 -30646614 - THE1C LTR MaLR -35 340 1 10346 106 36 33 chr12 113139841 113141407 -30645048 - THE1C-int LTR MaLR 0 1580 3 304 275 62 6 chr12 113141570 113141825 -30644630 + AluYa8 SINE Alu 128 295 -5 198 246 169 0 chr12 113142032 113142097 -30644358 + MIR SINE MIR 7 82 -180 714 209 16 42 chr12 113142114 113142305 -30644150 + MIR SINE MIR 57 242 -20 462 251 34 56 chr12 113142396 113142636 -30643819 - MLT1L LTR MaLR -198 417 84 391 273 37 71 chr12 113143057 113143383 -30643072 + L1ME4a LINE L1 5563 5877 -244 634 282 149 31 chr12 113143616 113144006 -30642449 + L2 LINE L2 2225 2660 -654 606 213 164 0 chr12 113144077 113144196 -30642259 - MLT1D LTR MaLR -34 471 333 593 228 19 12 chr12 113144196 113144358 -30642097 + MLT2D LTR ERVL 1 145 -269 16058 147 34 25 chr12 113144366 113144906 -30641549 + ERVL LTR ERVL 3033 3567 -2197 2116 134 0 0 chr12 113144906 113145204 -30641251 + AluSx SINE Alu 1 298 -14 16058 147 34 25 chr12 113145204 113145651 -30640804 + ERVL LTR ERVL 3567 4008 -1756 2005 88 35 21 chr12 113145651 113145934 -30640521 + AluSq SINE Alu 1 287 -26 16058 147 34 25 chr12 113145934 113147652 -30638803 + ERVL LTR ERVL 4008 5764 0 518 207 118 7 chr12 113147652 113147704 -30638751 + Ricksha DNA DNA 338 404 -850 451 149 0 0 chr12 113147704 113147771 -30638684 - THE1C LTR MaLR 0 428 362 312 120 0 0 chr12 113147781 113147831 -30638624 + Alu SINE Alu 250 299 -3 397 275 9 9 chr12 113147887 113147996 -30638459 + L2 LINE L2 3204 3312 -1 488 197 31 31 chr12 113149203 113149330 -30637125 - MIR SINE MIR -73 189 63 246 234 81 48 chr12 113149387 113149511 -30636944 - MIR SINE MIR -14 248 121 345 281 103 18 chr12 113150137 113150413 -30636042 + L2 LINE L2 2883 3278 -35 2097 138 36 28 chr12 113150522 113150883 -30635572 - THE1B LTR MaLR 0 364 1 353 265 96 42 chr12 113151103 113151269 -30635186 + MIR3 SINE MIR 32 206 -2 245 303 47 49 chr12 113152598 113152714 -30633741 + MIR SINE MIR 39 152 -62 519 267 25 135 chr12 113152836 113153024 -30633431 + L2 LINE L2 2536 2678 -636 1818 169 0 0 chr12 113153024 113153325 -30633130 + AluJo SINE Alu 11 311 0 519 267 25 135 chr12 113153325 113153459 -30632996 + L2 LINE L2 2678 2825 -489 2165 134 0 0 chr12 113153474 113153773 -30632682 - AluSq SINE Alu -14 299 1 287 312 64 21 chr12 113153773 113153914 -30632541 + MIR3 SINE MIR 45 191 -17 2166 109 3 0 chr12 113155274 113155597 -30630858 - AluSp SINE Alu 0 324 1 207 0 0 0 chr12 113155613 113155636 -30630819 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 514 265 230 5 chr12 113156270 113156470 -30629985 - MIR SINE MIR 0 262 18 390 268 130 0 chr12 113156710 113156833 -30629622 + L2 LINE L2 3175 3313 0 738 278 52 12 chr12 113157427 113157675 -30628780 + MLT1I LTR MaLR 135 392 -17 876 242 121 51 chr12 113157846 113157931 -30628524 + L1M4 LINE L1 2608 2686 -3460 646 194 7 50 chr12 113157931 113158070 -30628385 - FLAM_A SINE Alu 0 133 1 876 242 121 51 chr12 113158070 113158537 -30627918 + L1M4 LINE L1 2686 3199 -2947 285 313 75 34 chr12 113158672 113158819 -30627636 + L1ME3A LINE L1 5636 5788 -382 23 24 0 24 chr12 113158819 113158842 -30627613 + AT_rich Low_complexity Low_complexity 1 24 -16 697 168 0 7 chr12 113158842 113158979 -30627476 - L1MA7 LINE L1 -1 6290 6155 23 24 0 24 chr12 113158979 113158996 -30627459 + AT_rich Low_complexity Low_complexity 24 40 0 1527 133 17 4 chr12 113159008 113159241 -30627214 - AluSx SINE Alu -76 236 1 939 143 5 58 chr12 113159254 113159404 -30627051 - L1MA7 LINE L1 -235 6056 5916 3193 69 47 5 chr12 113159404 113159826 -30626629 - MLT2A1 LTR ERVL 0 444 5 939 143 5 58 chr12 113159826 113159864 -30626591 - L1MA7 LINE L1 -375 5916 5878 454 230 130 12 chr12 113159861 113160022 -30626433 + L1ME3A LINE L1 5786 5965 -205 * 224 304 0 0 chr12 113160453 113160509 -30625946 - L2 LINE L2 -289 3024 2969 231 294 120 48 chr12 113160932 113161201 -30625254 + L2 LINE L2 2623 2918 -396 2475 151 92 2 chr12 113161201 113161646 -30624809 - MER31A LTR ERV1 0 485 1 231 294 120 48 chr12 113161646 113161685 -30624770 + L2 LINE L2 2918 2953 -361 1803 247 65 78 chr12 113163454 113164235 -30622220 - L2 LINE L2 -10 3303 2531 1833 121 67 21 chr12 113164235 113164517 -30621938 + AluSg SINE Alu 1 295 -15 1803 247 65 78 chr12 113164517 113164845 -30621610 - L2 LINE L2 -782 2531 2200 644 188 15 38 chr12 113164858 113164991 -30621464 - L2 LINE L2 -3 3310 3181 * 672 227 48 48 chr12 113164980 113165187 -30621268 - L2 LINE L2 -1109 2205 1999 1935 123 3 7 chr12 113165190 113165474 -30620981 + AluSx SINE Alu 17 299 -13 310 309 21 31 chr12 113165804 113165901 -30620554 + MIR3 SINE MIR 61 156 -52 21 0 0 0 chr12 113166015 113166036 -30620419 + AT_rich Low_complexity Low_complexity 1 21 0 717 246 38 41 chr12 113166226 113166244 -30620211 + L1MA9 LINE L1 5994 6011 -301 2440 96 16 22 chr12 113166244 113166610 -30619845 - THE1B LTR MaLR 0 364 1 717 246 38 41 chr12 113166610 113166884 -30619571 + L1MA9 LINE L1 6011 6285 -27 2064 144 3 3 chr12 113168332 113168630 -30617825 + AluSx SINE Alu 1 298 -14 2146 116 7 0 chr12 113168634 113168927 -30617528 + AluSx SINE Alu 3 297 -15 251 221 0 73 chr12 113170721 113170789 -30615666 + L2 LINE L2 3206 3268 -4 2303 263 66 12 chr12 113170795 113171726 -30614729 - L2 LINE L2 -1 3312 2330 727 180 39 2 chr12 113171728 113171881 -30614574 + L1MB1 LINE L1 5933 6090 -78 1966 80 55 34 chr12 113171881 113172205 -30614250 + L1MA3 LINE L1 5972 6305 0 330 26 0 0 chr12 113172226 113172265 -30614190 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 937 107 0 0 chr12 113172265 113172387 -30614068 - FLAM_C SINE Alu -21 122 1 26 50 0 0 chr12 113172387 113172427 -30614028 + AT_rich Low_complexity Low_complexity 1 40 0 264 216 284 11 chr12 113172486 113172574 -30613881 + MER5A DNA MER1_type 77 188 -1 676 282 41 41 chr12 113172834 113172881 -30613574 - L2 LINE L2 -1035 2279 2233 2014 108 62 25 chr12 113172881 113173206 -30613249 + MER1B DNA MER1_type 1 337 0 676 282 41 41 chr12 113173206 113173403 -30613052 - L2 LINE L2 -1080 2234 2035 361 58 0 0 chr12 113173492 113173544 -30612911 + MADE1 DNA Mariner 29 80 0 216 400 25 0 chr12 113173556 113173676 -30612779 + MIR SINE MIR 140 262 0 861 168 46 63 chr12 113173729 113173967 -30612488 + MER46A DNA MER2_type 2 235 -1 189 0 0 0 chr12 113174255 113174276 -30612179 + (T)n Simple_repeat Simple_repeat 1 21 0 387 267 163 23 chr12 113175481 113175653 -30610802 - MIR SINE MIR -17 245 50 385 257 178 0 chr12 113175912 113176064 -30610391 + L1ME4a LINE L1 5930 6108 -13 23 68 0 0 chr12 113176136 113176180 -30610275 + AT_rich Low_complexity Low_complexity 1 44 0 2429 97 0 0 chr12 113176397 113176707 -30609748 - AluSg SINE Alu 0 310 1 192 340 0 0 chr12 113176795 113176848 -30609607 - L2 LINE L2 -50 3222 3170 351 233 0 0 chr12 113176871 113176944 -30609511 - Charlie8 DNA MER1_type -1 2416 2344 275 277 248 0 chr12 113177040 113177181 -30609274 - Charlie8 DNA MER1_type -2202 215 40 261 0 0 0 chr12 113177253 113177282 -30609173 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 2410 78 7 0 chr12 113177451 113177745 -30608710 + AluSc SINE Alu 1 296 -13 1192 335 104 51 chr12 113178381 113179743 -30606712 + L2 LINE L2 1831 3272 0 259 365 79 15 chr12 113179980 113180183 -30606272 - L2 LINE L2 -466 2848 2633 574 294 147 0 chr12 113182454 113182651 -30603804 - MIR SINE MIR -19 243 18 38 0 0 0 chr12 113186478 113186516 -30599939 + AT_rich Low_complexity Low_complexity 1 38 0 788 223 156 5 chr12 113187331 113187542 -30598913 - MIR SINE MIR 0 262 20 2501 155 144 40 chr12 113187606 113188272 -30598183 - L1MB3 LINE L1 -2 6181 5447 1221 263 132 44 chr12 113188489 113189215 -30597240 + L2 LINE L2 2490 3313 0 401 232 24 8 chr12 113189608 113189733 -30596722 + MER102a DNA MER1_type 50 176 -154 552 279 85 10 chr12 113189741 113189942 -30596513 + MER102a DNA MER1_type 105 320 -10 441 0 0 0 chr12 113191708 113191757 -30594698 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 96 19 0 chr12 113191794 113191870 -30594585 - Alu SINE Alu 0 300 251 21 0 0 0 chr12 113192388 113192409 -30594046 + AT_rich Low_complexity Low_complexity 1 21 0 2028 132 10 0 chr12 113192600 113192904 -30593551 + AluSx SINE Alu 2 308 -4 249 57 0 0 chr12 113194413 113194448 -30592007 + (A)n Simple_repeat Simple_repeat 1 35 0 2390 86 3 3 chr12 113195328 113195632 -30590823 + AluSp SINE Alu 1 304 -9 440 271 116 26 chr12 113196511 113196666 -30589789 - L2 LINE L2 -8 3264 3096 29 0 0 0 chr12 113198642 113198671 -30587784 + AT_rich Low_complexity Low_complexity 1 29 0 1330 146 82 54 chr12 113199087 113199402 -30587053 + MER33 DNA MER1_type 1 324 0 1124 108 65 5 chr12 113200684 113200869 -30585586 - MER30 DNA MER1_type -34 196 1 714 203 14 0 chr12 113203351 113203489 -30582966 - MIR3 SINE MIR -34 174 35 370 252 58 19 chr12 113203673 113203776 -30582679 - L2 LINE L2 -17 3255 3149 372 253 11 21 chr12 113203983 113204078 -30582377 - L2 LINE L2 -5 3267 3174 221 363 59 0 chr12 113204960 113205062 -30581393 + L2 LINE L2 3098 3205 -67 475 291 87 54 chr12 113205128 113205369 -30581086 - MIR SINE MIR -9 253 5 195 42 0 0 chr12 113205417 113205441 -30581014 + (TTA)n Simple_repeat Simple_repeat 1 24 0 420 226 104 27 chr12 113205481 113205611 -30580844 - MIR SINE MIR -61 147 19 233 316 143 10 chr12 113207198 113207296 -30579159 + L2 LINE L2 3161 3271 -1 698 194 143 17 chr12 113207334 113207509 -30578946 + MIR3 SINE MIR 5 201 -7 250 312 0 13 chr12 113208251 113208328 -30578127 + GA-rich Low_complexity Low_complexity 6 81 0 258 207 0 0 chr12 113210108 113210166 -30576289 + (TA)n Simple_repeat Simple_repeat 1 58 0 200 239 194 0 chr12 113211279 113211346 -30575109 - MIR SINE MIR -6 256 177 193 208 0 139 chr12 113211837 113211909 -30574546 - MIR SINE MIR -85 177 116 1269 148 141 3 chr12 113211996 113212286 -30574169 - L1ME4a LINE L1 -7 6114 5785 25 0 0 0 chr12 113212354 113212379 -30574076 + AT_rich Low_complexity Low_complexity 1 25 0 711 181 96 21 chr12 113212978 113213166 -30573289 + MER105 DNA DNA 1 202 -2 429 212 54 136 chr12 113213451 113213635 -30572820 - MIR SINE MIR -86 176 8 294 281 102 16 chr12 113213848 113213976 -30572479 - L2 LINE L2 -4 3309 3171 403 337 58 5 chr12 113214248 113214438 -30572017 - L2 LINE L2 -616 2698 2499 738 206 50 0 chr12 113215023 113215164 -30571291 - MER63 DNA MER1_type -288 774 1 556 285 169 46 chr12 113215169 113215601 -30570854 + HAL1 LINE L1 254 738 -1769 1239 266 82 13 chr12 113215637 113216114 -30570341 - L2 LINE L2 0 3313 2804 494 234 19 39 chr12 113216127 113216281 -30570174 + HAL1 LINE L1 778 928 -1579 7165 123 32 45 chr12 113216454 113216680 -30569775 + Tigger3b DNA MER2_type 1 228 -2800 1810 168 0 11 chr12 113216680 113216966 -30569489 + AluJo SINE Alu 1 283 -29 7165 123 32 45 chr12 113216966 113217297 -30569158 + Tigger3b DNA MER2_type 228 562 -2466 2260 99 3 3 chr12 113217297 113217590 -30568865 - AluSg SINE Alu -17 293 1 7165 123 32 45 chr12 113217590 113218278 -30568177 + Tigger3b DNA MER2_type 562 1231 0 618 128 11 0 chr12 113218470 113218564 -30567891 - FLAM SINE Alu -10 133 39 291 93 0 0 chr12 113218707 113218750 -30567705 + (CAT)n Simple_repeat Simple_repeat 2 44 0 210 366 37 22 chr12 113219102 113219236 -30567219 - MIR SINE MIR -126 136 1 746 136 41 0 chr12 113219348 113219517 -30566938 + G-rich Low_complexity Low_complexity 2 177 0 897 65 21 54 chr12 113219539 113219725 -30566730 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 265 290 134 13 chr12 113219787 113220011 -30566444 - MIR SINE MIR 0 262 12 238 268 14 14 chr12 113221938 113222009 -30564446 + MIR SINE MIR 19 89 -119 209 345 14 27 chr12 113222087 113222235 -30564220 - MIR SINE MIR -70 192 47 2323 89 0 7 chr12 113222422 113222724 -30563731 + AluSc SINE Alu 1 300 -9 603 269 92 34 chr12 113222964 113223202 -30563253 - MLT1L LTR MaLR -354 261 10 277 234 0 0 chr12 113223302 113223366 -30563089 + MIR SINE MIR 186 249 -13 195 42 0 0 chr12 113223374 113223398 -30563057 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2050 116 3 11 chr12 113223400 113223685 -30562770 - AluSp SINE Alu -30 283 1 271 254 14 0 chr12 113223686 113223757 -30562698 - MER5A DNA MER1_type -114 75 4 280 248 182 41 chr12 113224049 113224170 -30562285 - MIR SINE MIR -91 171 34 2230 95 24 7 chr12 113224574 113224870 -30561585 - AluSx SINE Alu -11 301 1 217 274 36 12 chr12 113225906 113225990 -30560465 + MIR SINE MIR 176 261 -1 641 201 72 0 chr12 113227067 113227206 -30559249 + L1MD2 LINE L1 6108 6256 -103 274 184 79 13 chr12 113227190 113227266 -30559189 + L1MD1 LINE L1 6162 6242 0 * 957 264 14 0 chr12 113227483 113227699 -30558756 + MER69 DNA AcHobo 65 283 -2243 * 3226 199 66 55 chr12 113227687 113228394 -30558061 + MER69 DNA AcHobo 1452 2150 -376 2263 111 13 0 chr12 113228394 113228700 -30557755 - AluSx SINE Alu -2 310 1 3226 199 66 55 chr12 113228700 113228806 -30557649 + MER69 DNA AcHobo 2150 2253 -273 1878 231 3 0 chr12 113228806 113229170 -30557285 - MLT1A1 LTR MaLR 0 365 1 3226 199 66 55 chr12 113229170 113229416 -30557039 + MER69 DNA AcHobo 2253 2524 -2 299 208 100 4 chr12 113229515 113229657 -30556798 - MIR SINE MIR -36 226 18 181 222 44 0 chr12 113229732 113229777 -30556678 - MIR SINE MIR -57 205 159 351 79 171 40 chr12 113229815 113229891 -30556564 - MLT1I LTR MaLR 0 409 324 2285 112 3 7 chr12 113230157 113230462 -30555993 - AluSq SINE Alu -9 304 1 194 189 0 0 chr12 113230487 113230524 -30555931 - MIR SINE MIR -109 153 117 213 39 0 0 chr12 113231215 113231241 -30555214 + (T)n Simple_repeat Simple_repeat 1 26 0 2175 146 56 5 chr12 113231281 113231659 -30554796 + MER57A LTR ERV1 1 397 -6 222 145 29 43 chr12 113231661 113231730 -30554725 + CT-rich Low_complexity Low_complexity 4 71 0 1368 149 110 4 chr12 113231755 113231983 -30554472 - AluJb SINE Alu -39 273 22 637 215 22 0 chr12 113232098 113232233 -30554222 + AluJb SINE Alu 116 253 -59 2485 73 0 0 chr12 113232736 113233037 -30553418 + AluY SINE Alu 1 301 -10 1864 144 17 10 chr12 113233055 113233346 -30553109 - AluJo SINE Alu -15 297 5 340 307 36 14 chr12 113234329 113234469 -30551986 - MIR SINE MIR -110 152 10 2034 148 7 0 chr12 113234773 113235083 -30551372 - AluJo SINE Alu 0 312 1 2093 141 3 0 chr12 113235141 113235440 -30551015 - AluSx SINE Alu -12 300 1 329 299 173 14 chr12 113235646 113235860 -30550595 + MIR SINE MIR 3 250 -12 281 156 311 11 chr12 113236957 113237047 -30549408 - MER5B DNA MER1_type -8 170 54 310 209 55 55 chr12 113237137 113237247 -30549208 - MIR3 SINE MIR -27 181 72 2378 23 0 0 chr12 113237367 113237625 -30548830 - AluY SINE Alu -53 258 1 320 147 73 0 chr12 113237627 113237695 -30548760 + MER115 DNA AcHobo 613 685 -8 600 308 51 60 chr12 113238099 113238414 -30548041 - L1ME LINE L1 -461 5660 5349 641 268 126 57 chr12 113238543 113239002 -30547453 + L2 LINE L2 2818 3308 -5 1429 139 51 27 chr12 113239002 113239147 -30547308 - L1MA4A LINE L1 -2 6301 6161 1980 140 45 0 chr12 113239147 113239439 -30547016 - AluJo SINE Alu -7 305 1 1429 139 51 27 chr12 113239439 113239588 -30546867 - L1MA4A LINE L1 -142 6161 6000 1395 178 87 0 chr12 113239708 113239950 -30546505 + AluJo SINE Alu 1 263 -49 244 0 56 0 chr12 113241195 113241231 -30545224 + (TAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 113241389 113241411 -30545044 + (CA)n Simple_repeat Simple_repeat 1 22 0 185 327 59 10 chr12 113241749 113241850 -30544605 + MIR3 SINE MIR 74 179 -29 229 257 14 29 chr12 113242362 113242432 -30544023 + L2 LINE L2 3201 3269 -3 230 275 29 0 chr12 113242887 113242956 -30543499 + MIR3 SINE MIR 124 194 -14 490 226 83 0 chr12 113243253 113243386 -30543069 - MIR SINE MIR -54 208 65 319 173 161 43 chr12 113243440 113243602 -30542853 - L1ME4a LINE L1 0 6121 5941 1524 55 5 30 chr12 113243762 113243963 -30542492 - MER107 DNA MER1_type -1 196 1 2053 107 55 7 chr12 113244798 113245089 -30541366 - AluSx SINE Alu -7 305 1 4018 72 25 7 chr12 113245095 113245661 -30540794 - L1MA2 LINE L1 0 6304 5729 2632 194 56 94 chr12 113245663 113245993 -30540462 - L1MC5 LINE L1 -111 7850 7509 381 164 0 0 chr12 113245993 113246054 -30540401 - L1PA10 LINE L1 -10 6158 6098 2632 194 56 94 chr12 113246054 113246564 -30539891 - L1MC5 LINE L1 -452 7509 7053 2697 87 20 3 chr12 113246564 113246922 -30539533 - THE1B LTR MaLR 0 364 1 2632 194 56 94 chr12 113246922 113247088 -30539367 - L1MC5 LINE L1 -908 7053 6882 189 0 0 0 chr12 113247088 113247109 -30539346 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 251 277 24 12 chr12 113247109 113247192 -30539263 - L1MC4 LINE L1 -1064 6978 6895 * 1973 244 22 18 chr12 113247180 113247676 -30538779 - L1MC4 LINE L1 -1868 5940 5443 1870 116 0 97 chr12 113247798 113248118 -30538337 - AluSx SINE Alu -23 289 1 1239 140 106 53 chr12 113248171 113248201 -30538254 + MLT1B LTR MaLR 112 139 -251 2225 105 7 0 chr12 113248201 113248497 -30537958 - AluSx SINE Alu -14 298 1 1239 140 106 53 chr12 113248497 113248678 -30537777 + MLT1B LTR MaLR 139 342 -48 1969 151 43 6 chr12 113248678 113249003 -30537452 - MER1B DNA MER1_type 0 337 1 1239 140 106 53 chr12 113249003 113249055 -30537400 + MLT1B LTR MaLR 342 390 0 2021 146 3 0 chr12 113249126 113249421 -30537034 - AluJb SINE Alu -16 296 1 2945 170 114 155 chr12 113249521 113249835 -30536620 - L1MC3 LINE L1 -8 7777 7452 1614 168 12 53 chr12 113249835 113250029 -30536426 - AluJb SINE Alu -3 309 132 2273 124 0 0 chr12 113250029 113250335 -30536120 + AluSx SINE Alu 1 306 -6 1614 168 12 53 chr12 113250335 113250462 -30535993 - AluJb SINE Alu -180 132 1 2945 170 114 155 chr12 113250462 113250849 -30535606 - L1MC3 LINE L1 -333 7452 7051 265 226 0 48 chr12 113250849 113250911 -30535544 - MLT1F1 LTR MaLR -472 95 37 2945 170 114 155 chr12 113250911 113250964 -30535491 - L1MC3 LINE L1 -734 7051 6997 201 94 0 0 chr12 113250964 113250996 -30535459 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2945 170 114 155 chr12 113250996 113251292 -30535163 - L1MC3 LINE L1 -788 6997 6710 1174 292 80 61 chr12 113251294 113251418 -30535037 - L1MC4 LINE L1 -1127 5019 4899 1557 165 40 37 chr12 113251418 113251715 -30534740 + AluJo SINE Alu 1 298 -14 1174 292 80 61 chr12 113251715 113252959 -30533496 - L1MC4 LINE L1 -1247 4899 3625 4543 145 12 7 chr12 113252959 113253907 -30532548 + L1MB7 LINE L1 4559 5515 -748 913 154 21 27 chr12 113253907 113254083 -30532372 + L1MB7 LINE L1 5998 6184 0 1954 148 3 7 chr12 113254092 113254383 -30532072 + AluJo SINE Alu 1 290 -22 461 17 0 17 chr12 113255270 113255329 -30531126 + (TA)n Simple_repeat Simple_repeat 1 58 0 377 118 66 66 chr12 113255356 113255432 -30531023 - Tigger1 DNA MER2_type -2342 76 1 271 188 12 47 chr12 113255432 113255517 -30530938 + (TA)n Simple_repeat Simple_repeat 1 82 0 11609 104 19 125 chr12 113255536 113257197 -30529258 + Tigger1 DNA MER2_type 400 1971 -447 1057 153 26 5 chr12 113257197 113257386 -30529069 + AluJb SINE Alu 120 312 0 11609 104 19 125 chr12 113257386 113257790 -30528665 + Tigger1 DNA MER2_type 1971 2416 -2 212 83 0 28 chr12 113257790 113257826 -30528629 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 113258297 113258319 -30528136 + AT_rich Low_complexity Low_complexity 1 22 0 1011 150 0 12 chr12 113258319 113258479 -30527976 - L1PB3 LINE L1 -2 6152 5995 2184 119 3 0 chr12 113258830 113259123 -30527332 + AluSx SINE Alu 1 294 -18 1617 158 14 40 chr12 113259378 113259675 -30526780 - AluJo SINE Alu -23 289 1 2015 82 93 4 chr12 113259684 113259963 -30526492 - AluSc SINE Alu -5 304 1 23 0 0 0 chr12 113259963 113259986 -30526469 + AT_rich Low_complexity Low_complexity 1 23 0 214 208 19 19 chr12 113260006 113260059 -30526396 + CT-rich Low_complexity Low_complexity 5 57 0 1872 230 102 29 chr12 113260301 113260482 -30525973 + L1MC4a LINE L1 6440 6606 -1202 414 0 0 0 chr12 113260482 113260528 -30525927 + (TG)n Simple_repeat Simple_repeat 2 47 0 1872 230 102 29 chr12 113260528 113260868 -30525587 + L1MC4a LINE L1 6606 6999 -809 2206 122 7 0 chr12 113260939 113261242 -30525213 + AluSx SINE Alu 1 305 -7 190 351 182 0 chr12 113261622 113261770 -30524685 - MIR SINE MIR -87 175 1 3116 90 53 101 chr12 113262014 113262438 -30524017 - MER4B LTR ERV1 0 779 224 2196 121 10 0 chr12 113262438 113262745 -30523710 - AluSg SINE Alu 0 310 1 3116 90 53 101 chr12 113262745 113262959 -30523496 - MER4B LTR ERV1 -555 224 1 18738 114 25 33 chr12 113262959 113266234 -30520221 - MER4B-int LTR ERV1 0 6758 3458 2906 10 0 0 chr12 113266234 113266544 -30519911 - AluY SINE Alu -1 310 1 18738 114 25 33 chr12 113266544 113266762 -30519693 - MER4B-int LTR ERV1 -3300 3458 3240 2313 104 3 0 chr12 113266762 113267069 -30519386 - AluSq SINE Alu -5 308 1 18738 114 25 33 chr12 113267069 113267417 -30519038 - MER4B-int LTR ERV1 -3518 3240 2997 1063 101 126 0 chr12 113267417 113267576 -30518879 - AluSg/x SINE Alu 0 312 134 8084 112 27 45 chr12 113267576 113269737 -30516718 - MER4B-int LTR ERV1 -3748 3010 1435 1899 200 63 43 chr12 113268687 113269012 -30517443 - LTR57-int LTR ERVL -3766 1577 1260 * 2227 53 15 0 chr12 113269012 113269274 -30517181 + AluY SINE Alu 23 288 -23 1899 200 63 43 chr12 113269274 113269286 -30517169 - LTR57-int LTR ERVL -4083 1260 1250 2148 118 0 3 chr12 113269286 113269582 -30516873 + AluSg SINE Alu 1 295 -15 1899 200 63 43 chr12 113269582 113269829 -30516626 - LTR57-int LTR ERVL -4093 1250 980 * 2775 133 24 13 chr12 113269815 113270275 -30516180 - MER4B-int LTR ERV1 -6056 702 238 1478 137 28 25 chr12 113270317 113270601 -30515854 - MER4B-int LTR ERV1 -6473 285 1 2786 103 60 72 chr12 113270609 113271216 -30515239 - MER4B LTR ERV1 -9 770 1 1728 81 0 4 chr12 113272271 113272505 -30513950 - THE1C LTR MaLR -142 233 1 2572 188 107 20 chr12 113272824 113273522 -30512933 - L1ME1 LINE L1 -6 6160 5402 776 182 39 0 chr12 113273539 113273720 -30512735 + L1ME1 LINE L1 5804 5991 -175 * 1349 202 76 47 chr12 113273719 113273872 -30512583 - L1ME1 LINE L1 -747 5399 5252 2166 97 31 0 chr12 113273872 113273993 -30512462 + AluY SINE Alu 1 117 -194 222 37 0 0 chr12 113273993 113274020 -30512435 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2166 97 31 0 chr12 113274020 113274188 -30512267 + AluY SINE Alu 117 299 -12 1349 202 76 47 chr12 113274188 113274505 -30511950 - L1ME1 LINE L1 -894 5252 4915 2607 190 48 37 chr12 113274717 113275285 -30511170 - MER90 LTR ERV1 0 575 2 557 256 11 83 chr12 113275287 113275467 -30510988 + MIR SINE MIR 8 174 -88 1704 150 4 11 chr12 113276149 113276409 -30510046 - AluJo SINE Alu -30 282 25 1743 183 0 0 chr12 113276473 113276758 -30509697 - AluJb SINE Alu -17 295 11 219 287 171 0 chr12 113278047 113278176 -30508279 - L2 LINE L2 -9 3304 3154 474 18 0 0 chr12 113280107 113280162 -30506293 + (TG)n Simple_repeat Simple_repeat 1 55 0 347 301 49 41 chr12 113280480 113280603 -30505852 + L2 LINE L2 3146 3269 -3 27 49 0 0 chr12 113281240 113281281 -30505174 + AT_rich Low_complexity Low_complexity 1 41 0 910 144 0 0 chr12 113281720 113281852 -30504603 - FLAM_C SINE Alu -11 132 1 417 259 69 23 chr12 113281969 113282100 -30504355 + L2 LINE L2 3134 3270 -2 2009 113 0 0 chr12 113282189 113282464 -30503991 - AluSx SINE Alu -17 295 21 30 27 0 0 chr12 113282858 113282895 -30503560 + AT_rich Low_complexity Low_complexity 1 37 0 2354 96 0 0 chr12 113282984 113283276 -30503179 - AluSx SINE Alu -20 292 1 243 103 0 0 chr12 113283938 113283977 -30502478 + (TTCTC)n Simple_repeat Simple_repeat 3 41 0 276 30 0 0 chr12 113283977 113284010 -30502445 + (TCCTG)n Simple_repeat Simple_repeat 4 36 0 1279 184 14 88 chr12 113284011 113284294 -30502161 - AluJo SINE Alu -27 285 24 306 339 117 37 chr12 113285358 113285733 -30500722 + L2 LINE L2 2006 2410 -904 984 256 246 26 chr12 113285812 113286443 -30500012 - L2 LINE L2 -25 3288 2435 240 378 0 20 chr12 113286986 113287084 -30499371 - L2 LINE L2 -35 3237 3142 272 289 122 0 chr12 113287250 113287340 -30499115 - MIR SINE MIR -157 105 5 1045 265 105 63 chr12 113287761 113288266 -30498189 + L2 LINE L2 2541 3081 -232 2443 84 3 0 chr12 113288266 113288564 -30497891 + AluSx SINE Alu 1 299 -13 1045 265 105 63 chr12 113288564 113288738 -30497717 + L2 LINE L2 3081 3246 -67 4365 126 26 10 chr12 113288918 113289615 -30496840 - L1PA15 LINE L1 -3 6162 5455 2234 114 0 9 chr12 113290187 113290502 -30495953 - AluSx SINE Alu 0 312 1 650 93 0 0 chr12 113291248 113291334 -30495121 + AluSg/x SINE Alu 214 299 -13 2556 64 0 0 chr12 113292386 113292684 -30493771 + AluY SINE Alu 1 298 -13 1782 178 111 21 chr12 113293144 113293623 -30492832 - Charlie1b DNA MER1_type -1 522 1 22 0 0 0 chr12 113295802 113295824 -30490631 + AT_rich Low_complexity Low_complexity 1 22 0 363 284 93 10 chr12 113297137 113297248 -30489207 + MER5A DNA MER1_type 48 166 -12 244 304 188 9 chr12 113297385 113297497 -30488958 - MIR SINE MIR -6 256 125 207 292 0 0 chr12 113298122 113298170 -30488285 + L2 LINE L2 1197 1244 -2070 1556 165 10 41 chr12 113298248 113298539 -30487916 - AluJo SINE Alu -30 282 1 658 267 30 25 chr12 113298699 113298901 -30487554 + L2 LINE L2 2142 2344 -970 244 202 60 48 chr12 113298925 113299009 -30487446 + MER94 DNA DNA 10 94 -40 221 250 109 33 chr12 113299062 113299154 -30487301 + L2 LINE L2 2815 2913 -401 247 221 176 0 chr12 113299157 113299225 -30487230 + MIR SINE MIR 81 160 -102 302 230 216 43 chr12 113299771 113299910 -30486545 + MIR SINE MIR 35 197 -65 28 29 0 0 chr12 113300302 113300337 -30486118 + AT_rich Low_complexity Low_complexity 1 35 0 577 160 40 0 chr12 113301869 113301969 -30484486 + AluSp/q SINE Alu 192 295 -18 1217 81 0 7 chr12 113302422 113302571 -30483884 + AluSx SINE Alu 24 171 -141 963 179 81 16 chr12 113302741 113302833 -30483622 - MER34 LTR ERV1 0 542 457 2321 95 0 10 chr12 113302833 113303137 -30483318 - AluSc SINE Alu -8 301 1 963 179 81 16 chr12 113303137 113303500 -30482955 - MER34 LTR ERV1 -85 457 31 289 265 102 20 chr12 113304255 113304353 -30482102 + MIR SINE MIR 131 236 -26 207 0 0 0 chr12 113304449 113304472 -30481983 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1952 133 0 14 chr12 113304476 113304762 -30481693 - AluJb SINE Alu -30 282 1 257 254 74 16 chr12 113304801 113304923 -30481532 - L1ME4a LINE L1 -8 6113 5985 292 258 184 39 chr12 113305568 113305801 -30480654 - L1ME4a LINE L1 -331 5790 5524 1542 178 70 0 chr12 113306092 113306423 -30480032 - L1MB4 LINE L1 0 6180 5827 233 301 0 37 chr12 113306836 113306972 -30479483 + L2 LINE L2 1279 1409 -1905 687 141 23 47 chr12 113307374 113307477 -30478978 - AluJb SINE Alu -187 125 24 2178 135 33 28 chr12 113307477 113307839 -30478616 + THE1B LTR MaLR 1 364 0 687 141 23 47 chr12 113307839 113307863 -30478592 - AluJb SINE Alu -288 24 1 290 266 153 31 chr12 113307864 113308093 -30478362 + L2 LINE L2 1939 2195 -1119 217 333 135 43 chr12 113308142 113308349 -30478106 + L2 LINE L2 2715 2940 -374 226 339 59 8 chr12 113308963 113309081 -30477374 + L2 LINE L2 3185 3308 -5 512 188 188 19 chr12 113309137 113309297 -30477158 + MIR SINE MIR 36 222 -40 453 168 189 120 chr12 113309300 113309491 -30476964 - MIR SINE MIR -50 212 9 208 254 0 34 chr12 113309472 113309531 -30476924 + L2 LINE L2 3208 3264 -8 * 448 225 33 66 chr12 113310714 113310865 -30475590 - L2 LINE L2 0 3313 3168 202 267 0 0 chr12 113311105 113311150 -30475305 + L2 LINE L2 3220 3264 -8 2195 91 7 3 chr12 113312330 113312628 -30473827 + AluY SINE Alu 1 299 -12 1140 185 5 29 chr12 113312856 113313061 -30473394 - AluJo SINE Alu -30 282 83 1487 157 0 111 chr12 113313062 113313394 -30473061 - AluSx SINE Alu -17 295 1 868 185 0 7 chr12 113313395 113313541 -30472914 - FRAM SINE Alu -31 145 1 216 286 18 0 chr12 113313803 113313859 -30472596 + MER91 DNA MER1_type 1 57 -83 467 291 119 7 chr12 113313934 113314085 -30472370 - MIR SINE MIR -93 169 2 21 36 0 0 chr12 113315147 113315175 -30471280 + AT_rich Low_complexity Low_complexity 1 28 0 413 176 0 15 chr12 113316677 113316761 -30469694 - L1M3 LINE L1 -695 5476 5395 206 130 43 22 chr12 113316987 113317033 -30469422 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 551 301 39 6 chr12 113318001 113318157 -30468298 + MIR SINE MIR 23 183 -79 515 197 121 0 chr12 113318398 113318530 -30467925 - L1MD1 LINE L1 -14 6228 6081 5038 92 11 18 chr12 113318584 113318782 -30467673 - L1PA11 LINE L1 0 6174 5976 2289 92 3 10 chr12 113318782 113319087 -30467368 - AluSp SINE Alu -10 303 1 5038 92 11 18 chr12 113319087 113319615 -30466840 - L1PA11 LINE L1 -198 5976 5453 22 35 0 0 chr12 113321510 113321539 -30464916 + AT_rich Low_complexity Low_complexity 1 29 0 297 0 0 0 chr12 113321601 113321634 -30464821 + (CA)n Simple_repeat Simple_repeat 2 34 0 2177 115 3 7 chr12 113321702 113322006 -30464449 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr12 113322115 113322140 -30464315 + AT_rich Low_complexity Low_complexity 1 25 0 2140 116 7 0 chr12 113323296 113323589 -30462866 - AluSx SINE Alu -15 297 3 2042 144 3 3 chr12 113323593 113323891 -30462564 - AluSx SINE Alu -14 298 1 795 246 38 41 chr12 113325339 113325613 -30460842 - L1MA9 LINE L1 -27 6285 6011 2430 96 16 22 chr12 113325613 113325979 -30460476 + THE1B LTR MaLR 1 364 0 795 246 38 41 chr12 113325979 113325997 -30460458 - L1MA9 LINE L1 -301 6011 5994 21 0 0 0 chr12 113326187 113326208 -30460247 + AT_rich Low_complexity Low_complexity 1 21 0 310 309 21 31 chr12 113326322 113326419 -30460036 - MIR3 SINE MIR -52 156 61 2262 94 3 3 chr12 113326749 113327046 -30459409 - AluSg SINE Alu -13 297 1 189 288 85 0 chr12 113327855 113327914 -30458541 - MIR SINE MIR -48 214 151 472 161 0 0 chr12 113327947 113328034 -30458421 + L1MB3 LINE L1 6097 6183 0 1993 113 39 3 chr12 113329045 113329329 -30457126 + AluSx SINE Alu 1 294 -18 442 304 37 61 chr12 113329419 113329580 -30456875 - L1MD1 LINE L1 -2165 5643 5487 1938 121 20 46 chr12 113329580 113329885 -30456570 - AluSg SINE Alu -13 297 1 442 304 37 61 chr12 113329885 113329937 -30456518 - L1MD1 LINE L1 -2321 5487 5435 415 246 169 15 chr12 113330157 113330287 -30456168 + MIR SINE MIR 3 152 -110 1698 198 0 7 chr12 113330463 113330766 -30455689 - AluJo SINE Alu -6 306 6 862 251 70 47 chr12 113331455 113331615 -30454840 - L1MD1 LINE L1 -1987 4159 4004 2563 108 8 3 chr12 113331615 113331977 -30454478 + THE1B LTR MaLR 1 364 0 862 251 70 47 chr12 113331977 113332202 -30454253 - L1MD1 LINE L1 -2142 4004 3765 2016 133 17 0 chr12 113332203 113332504 -30453951 + AluSx SINE Alu 1 306 -6 351 0 0 0 chr12 113332505 113332544 -30453911 + (TA)n Simple_repeat Simple_repeat 2 40 0 674 187 0 45 chr12 113332568 113332702 -30453753 + FLAM_C SINE Alu 1 128 -15 1639 233 41 27 chr12 113332721 113333283 -30453172 - L1MD1 LINE L1 -2392 3754 3185 234 136 0 23 chr12 113333287 113333331 -30453124 - LTR41 LTR ERVL -19 754 712 15031 116 20 33 chr12 113333340 113333553 -30452902 + Tigger1 DNA MER2_type 10 224 -2194 740 206 0 0 chr12 113333553 113333684 -30452771 - FLAM_A SINE Alu -2 131 1 15031 116 20 33 chr12 113333684 113334006 -30452449 + Tigger1 DNA MER2_type 224 549 -1869 2218 98 3 19 chr12 113334006 113334321 -30452134 + AluSg SINE Alu 1 310 0 15031 116 20 33 chr12 113334321 113334850 -30451605 + Tigger1 DNA MER2_type 549 1083 -1335 2165 119 3 0 chr12 113334850 113335153 -30451302 + AluSx SINE Alu 1 304 -8 15031 116 20 33 chr12 113335153 113336527 -30449928 + Tigger1 DNA MER2_type 1083 2418 0 849 193 95 54 chr12 113336618 113336913 -30449542 + MER33 DNA MER1_type 18 324 0 267 224 17 0 chr12 113337398 113337456 -30448999 - LTR50 LTR ERVL -726 69 11 586 176 124 29 chr12 113337466 113337676 -30448779 - L1MD1 LINE L1 -2959 3187 2958 743 170 0 0 chr12 113337677 113337789 -30448666 + MER2 DNA MER2_type 1 112 -233 2146 124 0 0 chr12 113337819 113338117 -30448338 - AluSg SINE Alu -12 298 1 1343 160 0 23 chr12 113338286 113338505 -30447950 - AluJb SINE Alu -17 295 82 1469 152 0 9 chr12 113338635 113338865 -30447590 - AluJo SINE Alu -22 290 63 2106 123 0 0 chr12 113338969 113339287 -30447168 + AluSx SINE Alu 1 318 0 2591 251 81 14 chr12 113339561 113340298 -30446157 + L2 LINE L2 2191 2977 -337 676 256 90 95 chr12 113340350 113340717 -30445738 - MLT1H LTR MaLR -114 435 71 990 253 115 10 chr12 113340740 113341044 -30445411 + L2 LINE L2 2974 3309 -4 1757 167 10 29 chr12 113341240 113341552 -30444903 + AluSx SINE Alu 1 306 -6 207 114 0 0 chr12 113342354 113342389 -30444066 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1262 233 44 0 chr12 113342590 113342860 -30443595 + AluJo SINE Alu 1 282 -30 2214 102 107 63 chr12 113343317 113343727 -30442728 + MSTA LTR MaLR 1 428 0 393 311 27 34 chr12 113343740 113343888 -30442567 + MIR3 SINE MIR 19 165 -43 2239 107 3 3 chr12 113343944 113344243 -30442212 + AluSx SINE Alu 2 300 -12 657 241 102 51 chr12 113344286 113344580 -30441875 + L1MC4a LINE L1 5610 5918 -1890 219 218 0 0 chr12 113344637 113344692 -30441763 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr12 113345149 113345181 -30441274 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr12 113345283 113345305 -30441150 + AT_rich Low_complexity Low_complexity 1 22 0 240 210 0 65 chr12 113346192 113346212 -30440243 + MER3 DNA MER1_type 33 48 -161 1063 157 56 30 chr12 113346212 113346410 -30440045 - MER3 DNA MER1_type -1 208 6 1476 166 111 7 chr12 113347349 113347620 -30438835 - AluJb SINE Alu -13 299 1 657 180 29 14 chr12 113348387 113348526 -30437929 + MIR SINE MIR 122 262 0 180 413 8 8 chr12 113348541 113348662 -30437793 + L2 LINE L2 2554 2674 -640 464 83 64 0 chr12 113349021 113349130 -30437325 + (TA)n Simple_repeat Simple_repeat 1 116 0 2024 125 3 10 chr12 113349186 113349475 -30436980 - AluSx SINE Alu -25 287 1 189 0 0 0 chr12 113349711 113349732 -30436723 + (T)n Simple_repeat Simple_repeat 1 21 0 358 250 70 0 chr12 113349746 113349846 -30436609 - MER20B DNA MER1_type -194 589 483 2306 225 21 88 chr12 113351403 113352025 -30434430 - MER20B DNA MER1_type -20 763 101 622 219 8 17 chr12 113352025 113352144 -30434311 - FLAM_A SINE Alu -14 119 2 2306 225 21 88 chr12 113352144 113352250 -30434205 - MER20B DNA MER1_type -682 101 90 1881 135 0 50 chr12 113352250 113352568 -30433887 + AluJb SINE Alu 1 302 -10 2306 225 21 88 chr12 113352568 113352635 -30433820 - MER20B DNA MER1_type -693 90 20 314 226 235 0 chr12 113352979 113353081 -30433374 + L2 LINE L2 3147 3272 0 213 313 241 30 chr12 113353176 113353342 -30433113 - MIR SINE MIR -42 220 20 243 259 116 18 chr12 113353516 113353628 -30432827 - MLT1I LTR MaLR -286 123 1 2509 194 58 14 chr12 113354446 113354863 -30431592 + L1MD3 LINE L1 7400 7850 -145 2417 87 3 0 chr12 113354863 113355175 -30431280 - AluSq SINE Alu 0 313 1 2509 194 58 14 chr12 113355175 113355328 -30431127 + L1MD3 LINE L1 7850 7995 0 183 42 0 0 chr12 113355447 113355471 -30430984 + (CA)n Simple_repeat Simple_repeat 2 25 0 1066 189 66 1 chr12 113355516 113355743 -30430712 + AluJb SINE Alu 1 275 -37 1754 266 83 39 chr12 113355798 113356790 -30429665 + L1MB1 LINE L1 3075 4109 -2037 769 160 237 21 chr12 113356823 113356883 -30429572 + MER46A DNA MER2_type 1 47 -2684 3260 171 19 22 chr12 113356883 113357520 -30428935 + MER41B LTR ERV1 1 635 0 769 160 237 21 chr12 113357520 113357653 -30428802 + MER46A DNA MER2_type 47 236 0 307 200 0 0 chr12 113357653 113357728 -30428727 + L1MB1 LINE L1 4145 4219 -1927 386 264 66 0 chr12 113358268 113358374 -30428081 - L2 LINE L2 -10 3303 3191 750 201 140 28 chr12 113358410 113358624 -30427831 - MIR SINE MIR -10 252 15 249 272 146 0 chr12 113358617 113358720 -30427735 - L2 LINE L2 -151 3162 3045 * 323 139 97 0 chr12 113358767 113358839 -30427616 + L2 LINE L2 2372 2450 -864 481 266 118 38 chr12 113358850 113359222 -30427233 - MLT1I LTR MaLR -7 402 1 1443 266 51 42 chr12 113359222 113360000 -30426455 + L2 LINE L2 2458 3241 -72 849 276 69 86 chr12 113360030 113360216 -30426239 - L2 LINE L2 -278 3035 2847 2061 106 4 0 chr12 113360216 113360490 -30425965 + AluSq SINE Alu 25 299 -14 849 276 69 86 chr12 113360490 113360639 -30425816 - L2 LINE L2 -466 2847 2697 243 0 0 0 chr12 113360639 113360666 -30425789 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1824 177 0 0 chr12 113360668 113360950 -30425505 - AluJo SINE Alu -30 282 1 849 276 69 86 chr12 113360950 113361144 -30425311 - L2 LINE L2 -617 2696 2514 320 292 85 0 chr12 113361150 113361280 -30425175 - L2 LINE L2 -1018 2296 2156 1125 265 76 12 chr12 113361591 113361918 -30424537 + L1M3d LINE L1 1 621 -5270 1211 118 0 6 chr12 113361919 113362089 -30424366 + AluSp SINE Alu 137 305 -8 3990 171 30 52 chr12 113362099 113363213 -30423242 + L1MB1 LINE L1 4964 6048 -120 2303 97 6 10 chr12 113363213 113363524 -30422931 - AluSg SINE Alu 0 310 1 3990 171 30 52 chr12 113363524 113363642 -30422813 + L1MB1 LINE L1 6048 6167 -1 708 181 9 0 chr12 113363874 113363990 -30422465 - FLAM_C SINE Alu -16 117 1 2803 215 80 14 chr12 113364788 113365528 -30420927 + L1MC4a LINE L1 6683 7471 -337 10884 168 34 46 chr12 113365548 113367543 -30418912 + L1M2a LINE L1 13 1983 -5185 3605 178 26 8 chr12 113367544 113368318 -30418137 + L1M2a LINE L1 2134 2921 -4247 953 144 0 0 chr12 113368319 113368458 -30417997 + AluSc SINE Alu 1 139 -170 1763 37 0 0 chr12 113368458 113368674 -30417781 - L1P LINE L1 -1015 5131 4916 1870 42 0 8 chr12 113368674 113368911 -30417544 + L1PA5 LINE L1 5916 6151 -3 1376 98 0 0 chr12 113368911 113369085 -30417370 + AluSc SINE Alu 124 297 -12 892 209 0 0 chr12 113369088 113369246 -30417209 + AluJo/FRAM SINE Alu 137 294 -8 3717 212 42 21 chr12 113369246 113370354 -30416101 + L1M2a LINE L1 2912 4057 -3110 2487 114 8 16 chr12 113370354 113370732 -30415723 + THE1C LTR MaLR 1 375 0 3717 212 42 21 chr12 113370732 113370965 -30415490 + L1M2a LINE L1 4057 4284 -2883 2120 120 0 3 chr12 113371029 113371321 -30415134 - AluSg SINE Alu -19 291 1 519 284 55 11 chr12 113371469 113371737 -30414718 - L1M3f LINE L1 -4164 1164 1021 328 256 106 50 chr12 113371757 113371937 -30414518 - L1MCb LINE L1 -4963 944 757 2003 143 0 10 chr12 113372317 113372617 -30413838 - AluSx SINE Alu -13 299 3 332 353 120 17 chr12 113372765 113373057 -30413398 - L2 LINE L2 -959 2355 2034 256 324 11 28 chr12 113373086 113373240 -30413215 + GA-rich Low_complexity Low_complexity 1 153 -26 2065 197 31 7 chr12 113373240 113373656 -30412799 + MSTB LTR MaLR 1 426 0 256 324 11 28 chr12 113373656 113373683 -30412772 + GA-rich Low_complexity Low_complexity 153 179 0 21 0 0 0 chr12 113374848 113374869 -30411586 + AT_rich Low_complexity Low_complexity 1 21 0 763 304 159 35 chr12 113375297 113376014 -30410441 - L2 LINE L2 0 3313 2508 238 283 90 38 chr12 113376066 113376265 -30410190 + L1MEd LINE L1 1306 1493 -4978 2321 92 0 3 chr12 113376265 113376559 -30409896 - AluSp SINE Alu -20 293 1 238 283 90 38 chr12 113376559 113376796 -30409659 + L1MEd LINE L1 1493 1954 -4517 310 261 153 33 chr12 113376850 113377065 -30409390 + L1MEd LINE L1 1856 2096 -4444 208 158 0 53 chr12 113377296 113377353 -30409102 + (TTAA)n Simple_repeat Simple_repeat 2 55 0 882 254 70 98 chr12 113377444 113378670 -30407785 + L1MEd LINE L1 2504 3695 -2845 528 178 178 0 chr12 113378673 113378780 -30407675 + AluJo SINE Alu 5 130 -172 330 292 68 99 chr12 113379008 113379200 -30407255 + L1MEd LINE L1 294 479 -5726 1419 117 38 5 chr12 113379409 113379622 -30406833 - MER30 DNA MER1_type 0 230 11 330 271 128 56 chr12 113379686 113379974 -30406481 + L1MEd LINE L1 1444 1752 -4644 951 174 0 0 chr12 113380523 113380672 -30405783 + AluJo SINE Alu 134 282 -30 1769 141 31 21 chr12 113380728 113381018 -30405437 + AluJo SINE Alu 11 303 -9 21 0 0 0 chr12 113381144 113381165 -30405290 + AT_rich Low_complexity Low_complexity 1 21 0 198 150 0 0 chr12 113381211 113381251 -30405204 + (CA)n Simple_repeat Simple_repeat 2 41 0 253 332 223 19 chr12 113381444 113381763 -30404692 + L3 LINE CR1 219 602 -975 247 327 69 10 chr12 113381901 113382002 -30404453 + MIR3 SINE MIR 85 191 -17 395 220 121 0 chr12 113382050 113382182 -30404273 + MER112 DNA MER1_type 80 227 -33 1765 166 14 17 chr12 113382195 113382491 -30403964 - AluJo SINE Alu -14 298 4 394 232 226 11 chr12 113382662 113382843 -30403612 + L3 LINE CR1 737 956 -621 429 259 59 47 chr12 113383069 113383128 -30403327 - MIR SINE MIR -44 218 161 1719 188 97 3 chr12 113383128 113383490 -30402965 + MSTD LTR MaLR 1 396 0 429 259 59 47 chr12 113383490 113383600 -30402855 - MIR SINE MIR -101 161 47 2216 74 51 0 chr12 113383650 113383946 -30402509 + AluY SINE Alu 1 311 0 35 63 0 0 chr12 113384092 113384155 -30402300 + AT_rich Low_complexity Low_complexity 1 63 0 2217 102 0 30 chr12 113384318 113384623 -30401832 - AluSx SINE Alu -16 296 1 1001 127 0 19 chr12 113384840 113384997 -30401458 + AluJb SINE Alu 159 312 0 196 313 188 9 chr12 113386145 113386257 -30400198 - L2 LINE L2 -779 2535 2404 2325 98 3 0 chr12 113386532 113386838 -30399617 - AluSq SINE Alu -6 307 1 210 350 20 30 chr12 113386893 113386993 -30399462 - MER5A DNA MER1_type -41 148 50 267 246 29 14 chr12 113386999 113387068 -30399387 + L1ME2 LINE L1 5997 6066 -98 * 556 170 38 0 chr12 113387064 113387170 -30399285 + L1MA7 LINE L1 5794 5903 -388 1429 168 78 3 chr12 113387170 113387492 -30398963 + L1MC/D LINE L1 5258 5603 -2439 274 225 69 62 chr12 113387877 113387956 -30398499 + HAL1b LINE L1 642 719 -629 1932 135 14 7 chr12 113387956 113388244 -30398211 + AluSx SINE Alu 1 290 -22 2244 112 0 7 chr12 113388252 113388556 -30397899 + AluSq SINE Alu 1 302 -11 274 225 69 62 chr12 113388556 113388627 -30397828 + HAL1b LINE L1 725 802 -546 479 223 194 5 chr12 113389181 113389387 -30397068 + HAL1b LINE L1 1018 1262 -86 1975 135 6 32 chr12 113389393 113389705 -30396750 - AluJb SINE Alu -8 304 1 1561 153 0 50 chr12 113389733 113390014 -30396441 - AluJb SINE Alu -8 304 38 800 226 103 10 chr12 113390049 113390244 -30396211 + MER58C DNA MER1_type 2 214 -1 786 214 161 0 chr12 113390984 113391176 -30395279 + MER58A DNA MER1_type 2 224 0 1927 144 7 7 chr12 113391247 113391539 -30394916 - AluSx SINE Alu -20 292 1 3603 162 72 35 chr12 113391540 113392168 -30394287 - L1MB5 LINE L1 -32 6142 5480 1469 69 0 0 chr12 113392168 113392343 -30394112 - AluY SINE Alu -14 297 123 3603 162 72 35 chr12 113392343 113392462 -30393993 - L1MB5 LINE L1 -694 5480 5367 580 82 13 56 chr12 113392468 113392716 -30393739 + (TA)n Simple_repeat Simple_repeat 1 237 0 563 317 97 28 chr12 113392741 113393341 -30393114 + L1ME3 LINE L1 5297 5937 -225 2197 80 0 14 chr12 113393608 113393945 -30392510 - AluY SINE Alu 0 333 1 508 284 180 9 chr12 113394032 113394360 -30392095 - L1MEc LINE L1 -1947 4268 3885 263 302 26 26 chr12 113394426 113394542 -30391913 - L1MEc LINE L1 -2525 3690 3575 317 274 92 12 chr12 113394588 113394752 -30391703 + L1M4 LINE L1 3207 3383 -2763 333 261 31 8 chr12 113396260 113396390 -30390065 - Alu SINE Alu 0 301 169 4236 117 5 2 chr12 113396565 113397198 -30389257 + MER41B LTR ERV1 1 635 0 32 57 0 0 chr12 113398406 113398459 -30387996 + AT_rich Low_complexity Low_complexity 1 53 0 444 299 104 38 chr12 113399542 113399830 -30386625 - L2 LINE L2 -955 2359 2053 466 191 15 96 chr12 113399926 113400062 -30386393 + MLT1H LTR MaLR 221 345 -204 21 57 0 0 chr12 113400956 113400991 -30385464 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr12 113401616 113401641 -30384814 + AT_rich Low_complexity Low_complexity 1 25 0 469 175 7 119 chr12 113402541 113402684 -30383771 - MLT1E3 LTR MaLR -8 616 490 431 212 82 21 chr12 113402687 113402882 -30383573 - MLT1E1 LTR MaLR -396 258 1 216 303 67 0 chr12 113403079 113403168 -30383287 - MIR SINE MIR -59 203 109 237 266 112 21 chr12 113403527 113403670 -30382785 - L1MEc LINE L1 -3518 2697 2542 671 286 89 60 chr12 113403774 113404426 -30382029 - L1MEc LINE L1 -3726 2489 1875 327 320 146 12 chr12 113404441 113404934 -30381521 - L1MEc LINE L1 -4584 1812 1254 2125 128 3 13 chr12 113404947 113405253 -30381202 + AluSx SINE Alu 1 303 -9 2314 154 46 2 chr12 113405299 113405709 -30380746 + MSTA LTR MaLR 1 428 0 216 67 0 0 chr12 113405766 113405796 -30380659 + (CA)n Simple_repeat Simple_repeat 2 31 0 246 222 0 19 chr12 113407276 113407330 -30379125 - MIR3 SINE MIR -2 206 154 2350 103 0 0 chr12 113407351 113407661 -30378794 + AluSq SINE Alu 1 310 -3 665 282 128 31 chr12 113408288 113408671 -30377784 - L2 LINE L2 -596 2718 2299 1279 196 53 15 chr12 113408798 113409232 -30377223 - L1 LINE L1 -3812 3036 2593 1100 155 0 0 chr12 113409232 113409393 -30377062 - AluSg/x SINE Alu -18 292 132 2477 68 3 0 chr12 113409393 113409689 -30376766 - AluSc SINE Alu -12 297 1 235 366 67 8 chr12 113409894 113410028 -30376427 + L2 LINE L2 3117 3258 -14 2214 116 0 0 chr12 113410367 113410669 -30375786 + AluSx SINE Alu 11 312 0 330 194 31 51 chr12 113411142 113411240 -30375215 + Charlie5 DNA MER1_type 2490 2585 -27 265 236 28 28 chr12 113412317 113412389 -30374066 + MLT1H LTR MaLR 1 72 -477 247 327 69 10 chr12 113413195 113413296 -30373159 + MIR3 SINE MIR 85 191 -17 395 220 121 0 chr12 113413344 113413476 -30372979 + MER112 DNA MER1_type 80 227 -33 1765 166 14 17 chr12 113413489 113413785 -30372670 - AluJo SINE Alu -14 298 4 687 204 15 7 chr12 113414054 113414191 -30372264 - AluJo SINE Alu -174 138 1 1419 83 56 5 chr12 113414191 113414407 -30372048 - LTR39 LTR ERV1 -556 227 1 663 258 75 96 chr12 113414793 113415114 -30371341 - MLT1J LTR MaLR -2 509 202 1721 156 4 11 chr12 113415114 113415390 -30371065 - AluJb SINE Alu -38 274 1 663 258 75 96 chr12 113415390 113415588 -30370867 - MLT1J LTR MaLR -309 202 1 233 320 10 30 chr12 113415828 113415928 -30370527 + L2 LINE L2 1827 1924 -1390 1125 184 17 4 chr12 113416839 113417072 -30369383 + MER33 DNA MER1_type 1 236 -88 2337 169 5 21 chr12 113417073 113417259 -30369196 + L1MC3 LINE L1 7241 7429 -356 2543 106 8 3 chr12 113417259 113417618 -30368837 + THE1B LTR MaLR 3 363 -1 2337 169 5 21 chr12 113417618 113417862 -30368593 + L1MC3 LINE L1 7429 7664 -121 719 204 0 64 chr12 113417875 113418080 -30368375 - AluJo SINE Alu 0 317 124 259 187 107 40 chr12 113419268 113419343 -30367112 + MIR SINE MIR 91 170 -92 26 30 0 0 chr12 113419434 113419467 -30366988 + AT_rich Low_complexity Low_complexity 1 33 0 2459 162 35 2 chr12 113419472 113419867 -30366588 - LTR39 LTR ERV1 -160 623 216 847 195 62 88 chr12 113419867 113420139 -30366316 - AluJo SINE Alu -8 304 40 2434 74 0 0 chr12 113421131 113421428 -30365027 + AluY SINE Alu 1 297 -14 378 342 100 11 chr12 113421438 113421698 -30364757 - L2 LINE L2 -1152 2162 1880 523 209 170 26 chr12 113422308 113422461 -30363994 - MLT1J2 LTR MaLR -275 175 1 294 297 0 0 chr12 113422540 113422614 -30363841 + L2 LINE L2 3199 3272 0 55 16 0 0 chr12 113423259 113423321 -30363134 + AT_rich Low_complexity Low_complexity 1 62 0 594 217 75 97 chr12 113423350 113423617 -30362838 - MIR SINE MIR 0 262 2 21 57 0 0 chr12 113423753 113423788 -30362667 + AT_rich Low_complexity Low_complexity 1 35 0 432 0 0 0 chr12 113424219 113424267 -30362188 + (CA)n Simple_repeat Simple_repeat 1 48 0 326 306 118 16 chr12 113424794 113425049 -30361406 - MSTB LTR MaLR -132 294 14 1361 221 36 11 chr12 113425117 113425397 -30361058 - AluJo SINE Alu -15 287 1 2397 209 44 4 chr12 113425397 113425851 -30360604 - MSTB-int LTR MaLR -29 1622 1151 879 235 12 0 chr12 113425888 113426054 -30360401 - MST-int LTR MaLR -333 1318 1151 361 165 0 24 chr12 113426095 113426180 -30360275 + T-rich Low_complexity Low_complexity 2 84 0 354 242 113 8 chr12 113426247 113426371 -30360084 - MST-int LTR MaLR -513 1138 1002 203 323 40 10 chr12 113426489 113426588 -30359867 - L2 LINE L2 -1212 2102 2001 565 203 8 0 chr12 113426919 113427052 -30359403 + LTR37A LTR ERV1 290 423 -3 182 310 0 56 chr12 113427486 113427557 -30358898 + MIR SINE MIR 45 111 -97 2165 210 27 44 chr12 113427805 113428395 -30358060 - MER20B DNA MER1_type -20 763 184 670 219 8 17 chr12 113428429 113428548 -30357907 - FLAM_A SINE Alu -14 119 2 9145 88 18 2 chr12 113428837 113430097 -30356358 - L1P LINE L1 -894 5252 3972 1462 194 82 3 chr12 113430202 113430496 -30355959 + MSTB LTR MaLR 106 422 -4 1127 161 117 5 chr12 113430499 113430704 -30355751 + MLT1A1 LTR MaLR 133 360 -5 2297 180 23 7 chr12 113430820 113431247 -30355208 - L1MB7 LINE L1 -90 6094 5661 582 168 7 58 chr12 113431325 113431480 -30354975 - FRAM SINE Alu 0 176 30 816 224 24 5 chr12 113431605 113431810 -30354645 + LTR37A LTR ERV1 197 405 -21 514 153 0 0 chr12 113431820 113431892 -30354563 + AluJ/FRAM SINE Alu 221 292 -20 524 263 58 23 chr12 113432210 113432381 -30354074 - MIR3 SINE MIR -11 197 21 29 0 0 0 chr12 113432629 113432658 -30353797 + AT_rich Low_complexity Low_complexity 1 29 0 1728 193 25 28 chr12 113433184 113433542 -30352913 + MLT1A2 LTR MaLR 18 374 0 317 283 50 0 chr12 113434382 113434481 -30351974 - L2 LINE L2 -19 3294 3191 680 221 141 24 chr12 113434517 113434730 -30351725 - MIR SINE MIR -10 252 15 236 272 146 0 chr12 113434723 113434826 -30351629 - L2 LINE L2 -151 3162 3045 * 323 139 97 0 chr12 113434873 113434945 -30351510 + L2 LINE L2 2372 2450 -864 495 132 30 21 chr12 113434956 113435058 -30351397 - MLT1I LTR MaLR -7 441 314 198 241 84 0 chr12 113435323 113435406 -30351049 + L2 LINE L2 2456 2545 -769 243 0 0 0 chr12 113485551 113485578 -30300877 + (T)n Simple_repeat Simple_repeat 1 27 0 522 287 7 0 chr12 113485590 113485726 -30300729 + MIR SINE MIR 125 261 -1 2410 94 0 0 chr12 113485875 113486182 -30300273 + AluSx SINE Alu 1 307 -5 2839 138 13 48 chr12 113486475 113487020 -30299435 + LTR26B LTR ERV1 1 526 -5 25 51 0 0 chr12 113487067 113487106 -30299349 + AT_rich Low_complexity Low_complexity 1 39 0 2011 231 50 67 chr12 113487108 113487583 -30298872 - L1ME3A LINE L1 -11 6159 5699 4134 24 10 0 chr12 113487583 113488074 -30298381 - L1PA4 LINE L1 -8 6147 5652 2011 231 50 67 chr12 113488074 113488315 -30298140 - L1ME3A LINE L1 -471 5699 5455 2162 127 0 16 chr12 113488336 113488651 -30297804 - AluSx SINE Alu -1 311 2 1996 179 7 21 chr12 113488813 113489250 -30297205 - L1MB8 LINE L1 -1 6177 5747 21 0 0 0 chr12 113489378 113489399 -30297056 + AT_rich Low_complexity Low_complexity 1 21 0 2189 103 3 0 chr12 113489399 113489691 -30296764 + AluSg SINE Alu 1 293 -17 914 159 34 67 chr12 113490256 113490464 -30295991 + MER20 DNA MER1_type 1 201 -18 195 42 0 0 chr12 113490551 113490575 -30295880 + (TC)n Simple_repeat Simple_repeat 1 24 0 277 276 181 9 chr12 113490947 113491063 -30295392 + L2 LINE L2 3176 3311 -2 884 156 10 47 chr12 113491614 113491806 -30294649 + MLT1B LTR MaLR 1 185 -205 1839 135 21 44 chr12 113491839 113492179 -30294276 + MER65C LTR ERV1 1 332 -129 2135 108 15 3 chr12 113492186 113492518 -30293937 + MER65C LTR ERV1 126 461 0 1174 165 0 5 chr12 113492518 113492714 -30293741 + MLT1B LTR MaLR 196 390 0 33444 33 7 0 chr12 113492953 113497962 -30288493 + L1PA4 LINE L1 1114 6151 -4 654 200 11 58 chr12 113498300 113498490 -30287965 + L1ME3A LINE L1 5795 5975 -195 1501 195 38 69 chr12 113498494 113498970 -30287485 - MLT1C LTR MaLR 0 467 7 618 222 49 10 chr12 113498978 113499160 -30287295 + L1ME3A LINE L1 5978 6162 -8 532 235 124 60 chr12 113499581 113499798 -30286657 + MIR SINE MIR 32 262 0 1590 210 23 23 chr12 113500625 113501021 -30285434 - MSTD LTR MaLR 0 396 1 534 275 88 12 chr12 113501301 113501472 -30284983 + MIR SINE MIR 74 257 -5 270 116 0 0 chr12 113501613 113501656 -30284799 + (TG)n Simple_repeat Simple_repeat 2 44 0 3090 191 13 38 chr12 113501674 113502242 -30284213 - L1MB4 LINE L1 -9 6171 5623 2306 107 0 0 chr12 113502242 113502540 -30283915 - AluSx SINE Alu -14 298 1 3090 191 13 38 chr12 113502540 113502687 -30283768 - L1MB4 LINE L1 -557 5623 5474 1260 223 34 14 chr12 113502701 113503055 -30283400 + MLT2D LTR ERVL 1 361 -53 559 26 26 0 chr12 113503069 113503146 -30283309 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 364 113 38 0 chr12 113503255 113503335 -30283120 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 946 210 52 35 chr12 113503459 113503688 -30282767 - MIR SINE MIR -10 252 20 1361 108 0 0 chr12 113504281 113504457 -30281998 - AluSc SINE Alu -2 307 132 2198 103 20 0 chr12 113504471 113504772 -30281683 - AluSc SINE Alu -2 307 1 261 0 0 0 chr12 113504780 113504809 -30281646 + (T)n Simple_repeat Simple_repeat 1 29 0 231 341 0 0 chr12 113505103 113505185 -30281270 - MIR3 SINE MIR -15 193 112 204 341 126 23 chr12 113505277 113505491 -30280964 + L3 LINE CR1 733 968 -609 282 284 147 94 chr12 113505751 113505928 -30280527 + L3 LINE CR1 1009 1175 -402 3804 100 17 22 chr12 113505928 113506516 -30279939 - L1MA2 LINE L1 -1 6303 5719 282 284 147 94 chr12 113506516 113506795 -30279660 + L3 LINE CR1 1175 1489 -88 180 345 89 35 chr12 113507032 113507107 -30279348 + L2 LINE L2 2839 2908 -364 669 206 0 15 chr12 113507107 113507238 -30279217 - FLAM_C SINE Alu -4 129 1 180 345 89 35 chr12 113507238 113507365 -30279090 + L2 LINE L2 2908 3052 -220 510 262 9 98 chr12 113508011 113508225 -30278230 - MIR SINE MIR 0 262 68 330 225 45 63 chr12 113508769 113508880 -30277575 + MIR SINE MIR 52 160 -102 295 204 117 48 chr12 113508882 113508985 -30277470 + MIR SINE MIR 95 204 -58 607 143 0 0 chr12 113509256 113509340 -30277115 - FLAM SINE Alu -20 123 40 453 228 83 104 chr12 113509345 113509537 -30276918 - L1ME4a LINE L1 -1 6120 5925 2276 104 0 7 chr12 113509537 113509835 -30276620 - AluSg SINE Alu -14 296 1 453 228 83 104 chr12 113509835 113510199 -30276256 - L1ME4a LINE L1 -196 5925 5576 * 2962 220 40 33 chr12 113510188 113510965 -30275490 - L1ME1 LINE L1 -34 6132 5330 2106 130 0 0 chr12 113510965 113511258 -30275197 - AluSc SINE Alu -16 293 1 2962 220 40 33 chr12 113511258 113511397 -30275058 - L1ME1 LINE L1 -836 5330 5194 694 147 4 142 chr12 113511399 113511631 -30274824 - L1ME1 LINE L1 -1727 4419 4220 3685 173 32 13 chr12 113511634 113512300 -30274155 - L1MB5 LINE L1 0 6174 5491 2170 146 3 0 chr12 113512300 113512608 -30273847 - AluSq SINE Alu -4 309 1 3685 173 32 13 chr12 113512608 113512693 -30273762 - L1MB5 LINE L1 -683 5491 5409 823 269 54 56 chr12 113512726 113513209 -30273246 - L1M4 LINE L1 -4314 2824 2343 1049 172 0 0 chr12 113513209 113513366 -30273089 - FRAM SINE Alu -21 155 1 796 250 19 8 chr12 113513366 113513629 -30272826 - L1M4 LINE L1 -4765 2194 1929 270 271 39 8 chr12 113513959 113514088 -30272367 - L1M4 LINE L1 -6661 198 66 2086 106 0 68 chr12 113514171 113514492 -30271963 - AluSx SINE Alu -13 299 1 515 290 25 10 chr12 113514501 113514701 -30271754 - L1ME LINE L1 -514 5607 5405 337 268 84 7 chr12 113515268 113515410 -30271045 - L1ME4a LINE L1 0 6121 5969 27 0 0 26 chr12 113515468 113515486 -30270969 + AT_rich Low_complexity Low_complexity 1 18 -19 198 0 0 0 chr12 113515486 113515508 -30270947 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 27 0 0 26 chr12 113515508 113515527 -30270928 + AT_rich Low_complexity Low_complexity 18 37 0 29 47 0 0 chr12 113515857 113515900 -30270555 + AT_rich Low_complexity Low_complexity 1 43 0 302 244 122 0 chr12 113516148 113516230 -30270225 - MER5C DNA MER1_type 0 324 233 289 262 184 0 chr12 113516258 113516361 -30270094 - MER5C DNA MER1_type -202 122 1 240 233 0 0 chr12 113516416 113516459 -30269996 + MER63 DNA MER1_type 1 43 -393 4657 60 206 26 chr12 113516464 113517164 -30269291 + LTR12 LTR ERV1 1 826 0 15270 92 40 18 chr12 113517164 113519392 -30267063 + HERV9 LTR ERV1 1 2177 -6222 7083 58 1 0 chr12 113519392 113521020 -30265435 + L1PA5 LINE L1 4536 6151 -3 7264 59 1 0 chr12 113520123 113521022 -30265433 + L1PA5 LINE L1 5254 6153 -1 * 15270 92 40 18 chr12 113521020 113521700 -30264755 + HERV9 LTR ERV1 2177 2972 -5427 * 17757 75 4 11 chr12 113521698 113524048 -30262407 + HERV9 LTR ERV1 6068 8399 0 5775 62 90 28 chr12 113524048 113524826 -30261629 + LTR12 LTR ERV1 1 826 0 324 205 39 126 chr12 113524830 113524957 -30261498 + MER63 DNA MER1_type 689 804 -256 413 299 31 0 chr12 113525099 113525226 -30261229 + LTR67 LTR ERVL 40 170 -387 402 148 46 83 chr12 113525455 113525511 -30260944 + LTR67 LTR ERVL 454 506 -51 2981 122 26 13 chr12 113525511 113525979 -30260476 + MER101 LTR ERV1 1 474 0 402 148 46 83 chr12 113525979 113526030 -30260425 + LTR67 LTR ERVL 506 557 0 3139 150 27 40 chr12 113526053 113526679 -30259776 - L1MB8 LINE L1 -5 6173 5556 835 153 13 38 chr12 113526679 113526836 -30259619 + FRAM SINE Alu 23 175 -1 311 268 106 28 chr12 113526875 113527017 -30259438 + L3 LINE CR1 1342 1494 -83 1066 144 39 6 chr12 113527735 113527915 -30258540 + AluSg/x SINE Alu 122 307 -3 285 284 0 14 chr12 113527940 113528014 -30258441 - MIR SINE MIR -170 92 20 337 247 11 11 chr12 113528136 113528225 -30258230 - MLT1J LTR MaLR -33 478 390 21 0 0 0 chr12 113528380 113528401 -30258054 + GC_rich Low_complexity Low_complexity 1 21 0 2185 118 0 7 chr12 113528401 113528705 -30257750 + AluSx SINE Alu 11 312 0 355 192 77 0 chr12 113529067 113529145 -30257310 - MIR SINE MIR -66 142 59 252 86 0 0 chr12 113529206 113529241 -30257214 + (T)n Simple_repeat Simple_repeat 1 35 0 2045 124 0 3 chr12 113529326 113529634 -30256821 - AluSx SINE Alu 0 309 3 1466 82 0 5 chr12 113530425 113530609 -30255846 + AluSx SINE Alu 1 183 -129 297 96 19 0 chr12 113530609 113530661 -30255794 + AluSp/q SINE Alu 251 303 0 315 313 61 30 chr12 113530977 113531175 -30255280 + L1ME4a LINE L1 5747 5950 -171 1954 129 18 4 chr12 113531289 113531608 -30254847 - AluSq SINE Alu 0 323 1 1636 82 23 5 chr12 113531751 113531970 -30254485 + AluSg/x SINE Alu 72 294 -16 2129 115 0 3 chr12 113531972 113532289 -30254166 + AluSg SINE Alu 1 316 0 660 159 0 0 chr12 113532291 113532398 -30254057 + AluJo/FRAM SINE Alu 131 237 -75 227 130 0 22 chr12 113532488 113532534 -30253921 + (GGA)n Simple_repeat Simple_repeat 1 45 0 1526 187 27 23 chr12 113533273 113533573 -30252882 + AluJo SINE Alu 1 301 -11 533 298 105 18 chr12 113533772 113534000 -30252455 + MIR SINE MIR 8 255 -7 439 100 71 0 chr12 113534150 113534220 -30252235 + MER5A DNA MER1_type 1 75 -114 1243 118 163 0 chr12 113534221 113534424 -30252031 + AluSg/x SINE Alu 74 309 -3 401 208 13 0 chr12 113534425 113534502 -30251953 + MER5A DNA MER1_type 62 139 -50 261 160 0 20 chr12 113534555 113534605 -30251850 + MER5A DNA MER1_type 140 188 -1 213 175 0 0 chr12 113535303 113535343 -30251112 + CT-rich Low_complexity Low_complexity 2 41 0 1324 244 50 33 chr12 113535803 113536201 -30250254 - MLT1I LTR MaLR 0 409 5 244 305 214 16 chr12 113536202 113536389 -30250066 - MIR SINE MIR -36 226 3 264 221 35 35 chr12 113536414 113536500 -30249955 - MIR SINE MIR -14 248 163 823 268 55 8 chr12 113537445 113537680 -30248775 - MIR SINE MIR -11 251 6 297 357 28 0 chr12 113537740 113537883 -30248572 + L3 LINE CR1 1030 1176 -401 584 263 110 22 chr12 113537884 113538112 -30248343 - MIR SINE MIR 0 262 15 315 179 95 0 chr12 113538155 113538239 -30248216 - MER5A DNA MER1_type -84 105 14 273 316 20 59 chr12 113538279 113538431 -30248024 + L3 LINE CR1 1175 1320 -257 266 340 184 18 chr12 113538450 113539068 -30247387 + L2 LINE L2 2245 2965 -349 1031 125 46 0 chr12 113539273 113539425 -30247030 - AluSg/x SINE Alu -19 293 135 1014 279 96 67 chr12 113539506 113540091 -30246364 + L2 LINE L2 2445 3070 -243 1014 195 6 0 chr12 113540091 113540265 -30246190 + FAM SINE Alu 1 175 0 1014 279 96 67 chr12 113540265 113540508 -30245947 + L2 LINE L2 3070 3305 -8 406 308 26 26 chr12 113540519 113540675 -30245780 + L3 LINE CR1 1323 1478 -99 260 230 100 40 chr12 113540917 113541017 -30245438 - L1ME4a LINE L1 -49 6072 5967 502 233 171 36 chr12 113541057 113541442 -30245013 - MLT1F1 LTR MaLR 0 584 140 220 353 39 10 chr12 113541504 113541606 -30244849 - L2 LINE L2 -1 3312 3208 324 227 27 0 chr12 113541730 113541805 -30244650 + MIR SINE MIR 180 256 -6 550 291 166 7 chr12 113541817 113542234 -30244221 + LTR33A LTR ERVL 1 509 -14 1598 159 19 15 chr12 113542254 113542524 -30243931 + AluJb SINE Alu 18 288 -24 632 247 51 0 chr12 113542544 113542702 -30243753 - MIR SINE MIR -64 198 33 191 351 42 36 chr12 113545252 113545417 -30241038 + L2 LINE L2 2896 3061 -211 865 183 56 6 chr12 113545421 113545601 -30240854 + MER53 DNA DNA 1 189 0 475 246 51 37 chr12 113545974 113546189 -30240266 - MIR SINE MIR -14 248 31 1062 257 63 41 chr12 113546289 113546748 -30239707 - MLT1J LTR MaLR -42 469 1 676 286 76 93 chr12 113546928 113547295 -30239160 + LTR67 LTR ERVL 2 362 -195 460 314 53 47 chr12 113547305 113547641 -30238814 + MLT1H LTR MaLR 1 301 -108 506 250 53 26 chr12 113547949 113548101 -30238354 + LTR67 LTR ERVL 398 553 -4 326 302 38 13 chr12 113548348 113548487 -30237968 + MIR SINE MIR 16 154 -79 230 323 72 12 chr12 113548623 113548790 -30237665 + L1ME4a LINE L1 5941 6117 -4 321 93 0 0 chr12 113549479 113549533 -30236922 + (GA)n Simple_repeat Simple_repeat 1 54 0 227 258 15 0 chr12 113549584 113549650 -30236805 - L2 LINE L2 -5 3267 3201 686 271 71 12 chr12 113549723 113549963 -30236492 - MIR SINE MIR -8 254 1 362 261 37 37 chr12 113549977 113550165 -30236290 - L2 LINE L2 -188 3084 2897 565 320 32 16 chr12 113550522 113550772 -30235683 + MIR SINE MIR 9 262 0 917 291 92 27 chr12 113550798 113551244 -30235211 - L2 LINE L2 -3 3310 2836 514 283 40 17 chr12 113551315 113551492 -30234963 - MIR SINE MIR -79 183 3 378 151 0 0 chr12 113551554 113551627 -30234828 + (TG)n Simple_repeat Simple_repeat 1 73 0 1017 231 20 20 chr12 113551830 113552081 -30234374 + MIR SINE MIR 2 252 -10 1158 238 211 21 chr12 113552235 113552710 -30233745 + L2 LINE L2 680 1244 -2070 579 241 68 11 chr12 113552724 113552915 -30233540 + L2 LINE L2 1495 1696 -1618 833 199 137 97 chr12 113552987 113553067 -30233388 - MLT1F LTR MaLR -123 419 344 324 0 0 0 chr12 113553067 113553103 -30233352 + (CA)n Simple_repeat Simple_repeat 1 36 0 833 199 137 97 chr12 113553103 113553316 -30233139 - MLT1F LTR MaLR -198 344 103 3727 141 54 6 chr12 113553316 113553948 -30232507 + L1MB3 LINE L1 5512 6173 -10 833 199 137 97 chr12 113553948 113554056 -30232399 - MLT1F LTR MaLR -439 103 1 2151 142 0 0 chr12 113554078 113554388 -30232067 - AluSx SINE Alu 0 312 3 1757 200 84 68 chr12 113554424 113555025 -30231430 + MLT1E1 LTR MaLR 1 652 -2 3215 247 65 49 chr12 113555026 113556539 -30229916 + L2 LINE L2 1775 3304 -9 211 264 47 94 chr12 113556520 113556626 -30229829 - L2 LINE L2 -10 3303 3203 * 412 308 13 19 chr12 113556643 113556802 -30229653 + MER5A DNA MER1_type 4 161 -28 269 329 20 27 chr12 113556675 113556824 -30229631 - MER5A DNA MER1_type -24 165 18 * 187 171 24 0 chr12 113556891 113556932 -30229523 + MIR SINE MIR 91 132 -76 2519 79 0 0 chr12 113557092 113557397 -30229058 - AluY SINE Alu -6 305 1 246 261 45 11 chr12 113557685 113557773 -30228682 + MIR SINE MIR 63 153 -109 1615 259 98 48 chr12 113557953 113558028 -30228427 - L1MC4 LINE L1 -1 8041 7971 1954 203 82 52 chr12 113558028 113558566 -30227889 - MLT2B3 LTR ERVL 0 554 1 1615 259 98 48 chr12 113558566 113558606 -30227849 - L1MC4 LINE L1 -71 7971 7934 432 0 0 0 chr12 113558606 113558654 -30227801 + (CA)n Simple_repeat Simple_repeat 2 49 0 1615 259 98 48 chr12 113558654 113559320 -30227135 - L1MC4 LINE L1 -108 7934 7220 195 239 34 11 chr12 113559415 113559503 -30226952 + CT-rich Low_complexity Low_complexity 4 93 0 585 233 27 43 chr12 113559503 113559684 -30226771 - MLT1E2 LTR MaLR -212 414 206 360 156 86 94 chr12 113559841 113559969 -30226486 + MER106B DNA MER1_type 903 1029 -30 2283 118 13 55 chr12 113560216 113560596 -30225859 + THE1B LTR MaLR 1 364 0 723 244 113 4 chr12 113560621 113560851 -30225604 + MIR SINE MIR 8 262 0 26 30 0 0 chr12 113561757 113561790 -30224665 + AT_rich Low_complexity Low_complexity 1 33 0 1570 141 25 116 chr12 113561911 113562231 -30224224 + AluJo SINE Alu 1 291 -21 330 318 105 63 chr12 113562285 113562618 -30223837 - MLT1K LTR MaLR -111 477 131 1782 163 76 17 chr12 113563636 113563971 -30222484 + MLT1A1 LTR MaLR 5 365 0 5793 194 42 31 chr12 113564433 113564701 -30221754 + Charlie1a DNA MER1_type 1 265 -2496 2031 119 17 3 chr12 113564701 113564995 -30221460 + AluSx SINE Alu 15 312 0 5793 194 42 31 chr12 113564995 113565058 -30221397 + Charlie1a DNA MER1_type 265 326 -2435 2110 107 17 0 chr12 113565058 113565347 -30221108 - AluSc SINE Alu -15 294 1 5793 194 42 31 chr12 113565347 113566177 -30220278 + Charlie1a DNA MER1_type 326 1183 -1578 1608 91 9 0 chr12 113566177 113566387 -30220068 - AluSq SINE Alu -2 311 100 5793 194 42 31 chr12 113566387 113566663 -30219792 + Charlie1a DNA MER1_type 1183 1455 0 248 51 0 26 chr12 113567018 113567057 -30219398 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 2087 17 0 0 chr12 113567057 113567289 -30219166 - L1PA4 LINE L1 -24 6131 5900 3402 23 0 0 chr12 113567290 113567683 -30218772 + L1P LINE L1 4898 5290 -856 2319 93 0 7 chr12 113567709 113568010 -30218445 + AluY SINE Alu 1 299 -12 357 255 94 0 chr12 113568083 113568189 -30218266 + MIR SINE MIR 49 164 -98 192 97 0 0 chr12 113568251 113568282 -30218173 + (CAT)n Simple_repeat Simple_repeat 1 31 0 247 250 17 0 chr12 113569230 113569290 -30217165 - MLT1K LTR MaLR -4 584 524 767 284 47 4 chr12 113569375 113569611 -30216844 + MIR SINE MIR 15 260 -2 21 0 0 0 chr12 113569679 113569700 -30216755 + AT_rich Low_complexity Low_complexity 1 21 0 2274 118 0 9 chr12 113569700 113570015 -30216440 + AluSx SINE Alu 1 312 0 3889 264 74 41 chr12 113570430 113571310 -30215145 + L1ME3A LINE L1 711 1561 -4654 2082 124 0 0 chr12 113571310 113571593 -30214862 + AluSx SINE Alu 1 283 -29 3889 264 74 41 chr12 113571593 113573559 -30212896 + L1ME3A LINE L1 1561 3579 -2636 1795 232 120 25 chr12 113573557 113574117 -30212338 + L1ME3A LINE L1 5627 6239 0 * 2192 271 75 11 chr12 113574220 113574863 -30211592 - MER115 DNA AcHobo -1 692 9 209 171 0 0 chr12 113574911 113574946 -30211509 + GA-rich Low_complexity Low_complexity 2 36 0 257 261 109 59 chr12 113575019 113575138 -30211317 + L2 LINE L2 3185 3309 -4 246 224 138 0 chr12 113575495 113575553 -30210902 - MIR SINE MIR -57 151 86 184 317 0 0 chr12 113575664 113575705 -30210750 - MER5A DNA MER1_type 0 189 149 234 184 0 0 chr12 113575718 113575756 -30210699 - MER5B DNA MER1_type -140 38 1 184 266 68 113 chr12 113576480 113576657 -30209798 - L2 LINE L2 -138 3134 2966 398 347 48 7 chr12 113577209 113577356 -30209099 + MIR SINE MIR 32 184 -78 528 147 0 0 chr12 113578080 113578155 -30208300 - 5S rRNA rRNA -33 88 14 216 275 0 0 chr12 113578451 113578600 -30207855 + GA-rich Low_complexity Low_complexity 1 149 0 1602 172 69 3 chr12 113580338 113580629 -30205826 + AluSx SINE Alu 3 312 0 396 40 0 0 chr12 113580649 113580699 -30205756 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 32 67 0 0 chr12 113581113 113581173 -30205282 + AT_rich Low_complexity Low_complexity 1 60 0 494 358 0 6 chr12 113581218 113581391 -30205064 - MIR3 SINE MIR -7 201 30 323 331 69 28 chr12 113583216 113583361 -30203094 - L3 LINE CR1 -2 1575 1425 222 37 0 0 chr12 113583362 113583389 -30203066 + (CACAG)n Simple_repeat Simple_repeat 1 27 0 303 374 30 8 chr12 113583985 113584116 -30202339 - L3 LINE CR1 -940 637 504 497 323 24 6 chr12 113584183 113584350 -30202105 + MIR SINE MIR 35 204 -58 634 361 21 0 chr12 113584364 113584605 -30201850 + MIR SINE MIR 3 248 -14 265 260 130 13 chr12 113584677 113584754 -30201701 - L3 LINE CR1 -1165 412 327 2328 104 7 0 chr12 113585211 113585518 -30200937 + AluSq SINE Alu 5 313 0 722 254 83 77 chr12 113585545 113586052 -30200403 + L1ME4a LINE L1 5566 6075 -46 1749 220 118 45 chr12 113586162 113586652 -30199803 + MLT1E LTR MaLR 68 593 0 2503 239 102 24 chr12 113586664 113586840 -30199615 - Zaphod DNA AcHobo -3133 898 737 1965 133 0 14 chr12 113586840 113587184 -30199271 + AluSx SINE Alu 1 340 0 2503 239 102 24 chr12 113587184 113587769 -30198686 - Zaphod DNA AcHobo -3294 737 76 2105 132 3 3 chr12 113587792 113588096 -30198359 - AluSx SINE Alu -7 305 2 986 116 7 7 chr12 113588145 113588291 -30198164 - THE1C LTR MaLR -229 146 1 4027 104 4 7 chr12 113588291 113588840 -30197615 - THE1C-int LTR MaLR 0 1580 1034 2931 106 72 98 chr12 113588842 113589380 -30197075 - THE1C-int LTR MaLR -1056 524 1 1995 152 37 35 chr12 113589380 113589754 -30196701 - THE1C LTR MaLR 0 375 1 819 281 28 60 chr12 113590563 113590962 -30195493 + MLT1J2 LTR MaLR 65 450 0 264 285 103 118 chr12 113590962 113591225 -30195230 + L2 LINE L2 2996 3254 -18 654 256 102 71 chr12 113591347 113591796 -30194659 + MLT1J LTR MaLR 11 473 -38 465 255 139 28 chr12 113592076 113592292 -30194163 - MIR SINE MIR -22 240 1 253 242 15 0 chr12 113592412 113592478 -30193977 - MLT1K LTR MaLR 0 588 522 302 242 0 15 chr12 113592702 113592768 -30193687 - MLT1K LTR MaLR -333 255 191 3755 140 48 28 chr12 113593129 113593738 -30192717 + MER4D LTR ERV1 1 625 -278 2264 113 3 0 chr12 113593738 113594040 -30192415 - AluSx SINE Alu -9 303 1 3755 140 48 28 chr12 113594040 113594080 -30192375 + MER4D LTR ERV1 625 663 -240 563 265 168 59 chr12 113594098 113594539 -30191916 - MLT1L LTR MaLR -92 523 35 295 280 8 45 chr12 113594596 113594728 -30191727 + L2 LINE L2 3161 3287 -26 346 311 74 37 chr12 113594866 113595056 -30191399 - L2 LINE L2 -1 3271 3075 1186 169 53 83 chr12 113595141 113595442 -30191013 + AluJo SINE Alu 12 303 -9 291 279 78 54 chr12 113595476 113595605 -30190850 - MIR SINE MIR -83 179 48 363 213 0 0 chr12 113596299 113596379 -30190076 + CT-rich Low_complexity Low_complexity 1 80 0 2104 138 7 0 chr12 113596381 113596685 -30189770 - AluSx SINE Alu -6 306 1 1034 201 34 30 chr12 113597069 113597332 -30189123 - AluJo SINE Alu -17 295 32 180 370 0 0 chr12 113597754 113597827 -30188628 - L2 LINE L2 -5 3308 3236 700 272 66 41 chr12 113597850 113598255 -30188200 + MLT1H LTR MaLR 30 549 0 255 369 24 12 chr12 113598258 113598342 -30188113 - L2 LINE L2 -71 3201 3117 283 321 57 7 chr12 113598986 113599126 -30187329 + MIR SINE MIR 3 149 -113 943 269 131 80 chr12 113599130 113599520 -30186935 + MLT1J2 LTR MaLR 1 406 -3 2208 155 37 26 chr12 113599790 113600333 -30186122 + MLT2A2 LTR ERVL 1 552 -2 977 259 34 4 chr12 113600715 113600977 -30185478 + MER102b DNA MER1_type 71 340 -1 422 370 42 69 chr12 113601081 113601165 -30185290 - L2 LINE L2 -1 3271 3186 1926 159 0 0 chr12 113601165 113601448 -30185007 + AluSx SINE Alu 1 283 -29 239 54 27 0 chr12 113601452 113601489 -30184966 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 422 370 42 69 chr12 113601489 113601880 -30184575 - L2 LINE L2 -89 3183 2804 2361 96 3 0 chr12 113602254 113602555 -30183900 - AluSc SINE Alu -7 302 1 420 329 103 7 chr12 113603149 113603304 -30183151 - MIR SINE MIR -70 192 23 650 245 145 59 chr12 113603421 113603883 -30182572 - MLT1H LTR MaLR -16 533 1 713 295 148 19 chr12 113603967 113604484 -30181971 + L2 LINE L2 2743 3313 0 2286 120 0 3 chr12 113604538 113604847 -30181608 - AluSg SINE Alu -2 308 1 480 212 108 13 chr12 113605120 113605273 -30181182 + MIR SINE MIR 23 190 -62 270 226 48 0 chr12 113605730 113605792 -30180663 - MIR3 SINE MIR -46 162 98 396 0 0 0 chr12 113605831 113605875 -30180580 + (TG)n Simple_repeat Simple_repeat 2 45 0 1006 260 74 9 chr12 113605898 113606221 -30180234 - Tigger8 DNA MER2_type -91 575 232 1740 255 32 91 chr12 113606264 113606836 -30179619 - MER69 DNA AcHobo -1826 700 181 2985 55 0 0 chr12 113606836 113607181 -30179274 - L1PA5 LINE L1 -3 6151 5807 1740 255 32 91 chr12 113607181 113607352 -30179103 - MER69 DNA AcHobo -2345 181 1 225 250 0 0 chr12 113607471 113607519 -30178936 + MER58A DNA MER1_type 1 48 -176 1066 263 43 60 chr12 113608079 113608285 -30178170 + L2 LINE L2 2605 2813 -500 903 224 40 36 chr12 113608285 113608508 -30177947 + MER58A DNA MER1_type 1 224 0 1066 263 43 60 chr12 113608508 113608617 -30177838 + L2 LINE L2 2813 2922 -391 1536 109 4 50 chr12 113608617 113608855 -30177600 - MER30 DNA MER1_type -2 228 2 1066 263 43 60 chr12 113608855 113609258 -30177197 + L2 LINE L2 2922 3313 0 458 278 61 77 chr12 113609313 113609691 -30176764 - MLT1J LTR MaLR -111 400 29 245 302 35 23 chr12 113609897 113609983 -30176472 + L2 LINE L2 3186 3272 0 233 314 138 62 chr12 113610060 113610270 -30176185 - MIR SINE MIR -12 250 25 315 170 0 0 chr12 113610291 113610344 -30176111 - L2 LINE L2 0 3313 3261 481 168 53 11 chr12 113610719 113610814 -30175641 - LTR67 LTR ERVL -2 555 457 842 291 60 44 chr12 113610976 113611361 -30175094 - MLT1I LTR MaLR -18 391 1 1808 220 107 22 chr12 113611858 113612386 -30174069 + MLT1F1 LTR MaLR 1 567 0 181 239 227 11 chr12 113612390 113612478 -30173977 - L2 LINE L2 -1 3312 3206 304 284 17 0 chr12 113612478 113612594 -30173861 + MER103 DNA DNA 33 150 -16 235 286 57 0 chr12 113612807 113612877 -30173578 - L2 LINE L2 -4 3268 3195 307 242 74 47 chr12 113613676 113613825 -30172630 + L1 LINE L1 5152 5304 -842 583 264 150 0 chr12 113613842 113614009 -30172446 + MIR SINE MIR 68 259 -3 686 283 63 52 chr12 113614009 113614376 -30172079 + L1ME4a LINE L1 5455 5825 -296 524 188 194 88 chr12 113614387 113614706 -30171749 + L1MC4 LINE L1 7690 8042 0 180 250 0 23 chr12 113614826 113614870 -30171585 - L2 LINE L2 -20 3252 3210 * 296 329 88 37 chr12 113614842 113615058 -30171397 - MIR SINE MIR -29 233 7 244 322 56 0 chr12 113615237 113615327 -30171128 - L2 LINE L2 -241 3031 2937 187 389 7 22 chr12 113615492 113615631 -30170824 - L2 LINE L2 -612 2702 2566 1289 248 37 77 chr12 113615724 113616143 -30170312 + LTR33A LTR ERVL 2 397 -126 2266 112 0 0 chr12 113616143 113616438 -30170017 - AluSx SINE Alu -17 295 1 1289 248 37 77 chr12 113616438 113616554 -30169901 + LTR33A LTR ERVL 397 516 -7 198 255 0 0 chr12 113616812 113616859 -30169596 - L2 LINE L2 0 3313 3267 372 290 105 16 chr12 113617044 113617168 -30169287 - L2 LINE L2 0 3272 3138 592 263 34 34 chr12 113617503 113617682 -30168773 + MLT1I LTR MaLR 1 179 -230 1734 104 0 0 chr12 113617899 113618121 -30168334 + AluSq SINE Alu 1 222 -91 396 231 0 44 chr12 113618140 113618231 -30168224 - MLT1I LTR MaLR -230 179 93 545 147 0 32 chr12 113618231 113618326 -30168129 + AluSg/x SINE Alu 203 294 -18 300 223 157 25 chr12 113618803 113618924 -30167531 - MIR SINE MIR 0 262 126 233 91 114 0 chr12 113618930 113618974 -30167481 + MADE1 DNA Mariner 32 80 0 983 129 26 19 chr12 113619352 113619507 -30166948 + FRAM SINE Alu 1 151 -25 22 0 0 0 chr12 113619981 113620003 -30166452 + AT_rich Low_complexity Low_complexity 1 22 0 2470 130 28 0 chr12 113620077 113620431 -30166024 - THE1B LTR MaLR 0 364 1 388 272 85 67 chr12 113620434 113620554 -30165901 + L1ME4a LINE L1 5681 5797 -324 363 44 0 0 chr12 113620554 113620599 -30165856 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr12 113620598 113620625 -30165830 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 388 272 85 67 chr12 113620599 113620879 -30165576 + L1ME4a LINE L1 5797 6062 -59 289 279 29 0 chr12 113621165 113621233 -30165222 - L2 LINE L2 -211 3061 2992 369 315 20 96 chr12 113621314 113621565 -30164890 - MIR SINE MIR -2 260 29 292 328 51 56 chr12 113621820 113622015 -30164440 - L2 LINE L2 -219 3053 2860 189 222 0 0 chr12 113622057 113622120 -30164335 + (TG)n Simple_repeat Simple_repeat 2 64 0 1198 119 0 71 chr12 113622151 113622361 -30164094 - L1M2 LINE L1 -618 5694 5500 5450 130 15 18 chr12 113622751 113623396 -30163059 - L1MA9 LINE L1 -5 6307 5664 2274 132 0 0 chr12 113623396 113623706 -30162749 - AluSx SINE Alu -2 310 1 5450 130 15 18 chr12 113623706 113624004 -30162451 - L1MA9 LINE L1 -648 5664 5367 308 246 180 48 chr12 113624048 113624276 -30162179 - L2 LINE L2 -1 3271 3014 21 0 0 0 chr12 113625062 113625083 -30161372 + AT_rich Low_complexity Low_complexity 1 21 0 219 290 9 9 chr12 113626583 113626690 -30159765 + (CGG)n Simple_repeat Simple_repeat 3 109 0 * 236 169 28 42 chr12 113626642 113626713 -30159742 + (CCG)n Simple_repeat Simple_repeat 2 71 0 292 254 0 0 chr12 113628035 113628106 -30158349 + (TG)n Simple_repeat Simple_repeat 1 71 0 252 0 0 0 chr12 113628364 113628392 -30158063 + (CA)n Simple_repeat Simple_repeat 1 28 0 530 245 19 32 chr12 113628688 113628843 -30157612 + MIR3 SINE MIR 34 186 -22 378 226 321 0 chr12 113629476 113629582 -30156873 - MIR SINE MIR -118 144 5 194 298 53 43 chr12 113629717 113629811 -30156644 + L2 LINE L2 3170 3264 -8 737 150 31 16 chr12 113629895 113630022 -30156433 - FLAM_A SINE Alu 0 142 14 248 281 146 12 chr12 113630398 113630480 -30155975 + L2 LINE L2 2928 3020 -252 280 209 11 121 chr12 113630544 113630635 -30155820 + L2 LINE L2 3188 3268 -4 702 273 100 22 chr12 113630690 113630921 -30155534 + MIR SINE MIR 13 261 -1 488 214 0 0 chr12 113631144 113631228 -30155227 + FLAM SINE Alu 38 121 -22 217 0 61 0 chr12 113631228 113631261 -30155194 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 263 110 3 0 chr12 113631389 113631433 -30155022 - AluSq/x SINE Alu -187 115 78 260 161 0 18 chr12 113631435 113631491 -30154964 + L1ME3 LINE L1 6108 6162 0 252 204 68 199 chr12 113631655 113631831 -30154624 + MIR SINE MIR 95 247 -15 229 196 39 27 chr12 113632516 113632591 -30153864 + MIR SINE MIR 87 168 -40 * 267 189 63 54 chr12 113632575 113632669 -30153786 - MIR SINE MIR -1 261 164 2189 122 3 0 chr12 113632669 113632965 -30153490 - AluSq SINE Alu -16 297 1 267 189 63 54 chr12 113632965 113632981 -30153474 - MIR SINE MIR -98 164 150 452 275 68 68 chr12 113632999 113633279 -30153176 - MLT1J1 LTR MaLR -52 394 115 618 287 196 3 chr12 113634523 113634844 -30151611 - MLT1J1 LTR MaLR 0 446 64 638 228 29 0 chr12 113634920 113635056 -30151399 - MIR SINE MIR -85 177 38 248 296 80 11 chr12 113635059 113635147 -30151308 + MIR SINE MIR 159 252 -10 604 323 85 5 chr12 113635333 113635534 -30150921 - MIR SINE MIR -32 230 14 889 289 4 33 chr12 113636003 113636245 -30150210 + MIR SINE MIR 27 261 -1 511 266 283 0 chr12 113636359 113636532 -30149923 + MIR SINE MIR 40 261 -1 412 292 145 60 chr12 113636565 113637143 -30149312 - L2 LINE L2 -55 3217 2609 366 304 9 18 chr12 113637125 113637275 -30149180 - MIR SINE MIR -62 146 19 * 537 234 89 9 chr12 113637297 113637453 -30149002 - MIR3 SINE MIR -41 167 1 212 339 39 47 chr12 113637997 113638124 -30148331 - L2 LINE L2 -30 3242 3117 243 280 67 0 chr12 113638911 113638986 -30147469 + MIR SINE MIR 80 159 -103 545 248 101 7 chr12 113639135 113639284 -30147171 - MIR SINE MIR -91 171 9 226 344 21 11 chr12 113639390 113639483 -30146972 - MIR SINE MIR -142 120 27 495 258 58 32 chr12 113640195 113640384 -30146071 + MIR SINE MIR 20 211 -51 2983 250 107 19 chr12 113640414 113641668 -30144787 - L2 LINE L2 -2 3311 1961 2137 153 0 3 chr12 113641764 113642077 -30144378 + AluJo SINE Alu 1 312 0 599 232 165 18 chr12 113643129 113643353 -30143102 + MIR SINE MIR 6 262 0 228 229 148 0 chr12 113643452 113643513 -30142942 + L2 LINE L2 3242 3311 -2 441 222 28 28 chr12 113643518 113643626 -30142829 + L2 LINE L2 3192 3299 -14 180 341 47 24 chr12 113643965 113644050 -30142405 - MIR SINE MIR -66 142 56 378 296 79 16 chr12 113644236 113644425 -30142030 - MIR SINE MIR -26 236 36 191 170 106 0 chr12 113644704 113644751 -30141704 - L2 LINE L2 0 3313 3262 407 228 108 42 chr12 113645098 113645265 -30141190 - MIR SINE MIR -65 197 20 965 203 6 0 chr12 113645587 113645750 -30140705 - FAM SINE Alu -11 164 1 281 169 17 0 chr12 113646424 113646483 -30139972 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 301 145 0 chr12 113647660 113647743 -30138712 - L2 LINE L2 -22 3250 3156 219 143 0 0 chr12 113648229 113648264 -30138191 + MIR SINE MIR 115 149 -59 2137 154 93 18 chr12 113648448 113648845 -30137610 + MSTA LTR MaLR 1 427 -1 219 281 16 16 chr12 113649699 113649763 -30136692 + L2 LINE L2 3126 3189 -83 1840 181 3 16 chr12 113649765 113650074 -30136381 - AluJo SINE Alu -7 305 1 1114 234 43 90 chr12 113650275 113650390 -30136065 - MLT1J LTR MaLR -18 493 374 1972 155 21 39 chr12 113650390 113650771 -30135684 - THE1C LTR MaLR 0 375 2 1114 234 43 90 chr12 113650771 113651146 -30135309 - MLT1J LTR MaLR -137 374 26 428 197 25 74 chr12 113652204 113652326 -30134129 - MLT1K LTR MaLR -11 577 462 488 330 17 22 chr12 113652659 113652838 -30133617 - MIR SINE MIR -38 224 47 2155 121 0 0 chr12 113653228 113653517 -30132938 - AluY SINE Alu -20 291 3 232 203 72 14 chr12 113653970 113654039 -30132416 - L2 LINE L2 -7 3306 3234 21 36 0 0 chr12 113654054 113654082 -30132373 + AT_rich Low_complexity Low_complexity 1 28 0 447 169 153 24 chr12 113654114 113654238 -30132217 - MLT1G1 LTR MaLR -2 553 414 505 248 121 10 chr12 113654321 113654617 -30131838 - MLT1G1 LTR MaLR -302 288 1 303 203 0 0 chr12 113654962 113655036 -30131419 + (TA)n Simple_repeat Simple_repeat 1 74 0 237 65 0 0 chr12 113655045 113655076 -30131379 + (CA)n Simple_repeat Simple_repeat 2 32 0 685 263 181 51 chr12 113655101 113655214 -30131241 - L2 LINE L2 -2 3311 3214 1748 147 46 11 chr12 113655214 113655499 -30130956 + AluJb SINE Alu 2 296 -16 685 263 181 51 chr12 113655499 113655739 -30130716 - L2 LINE L2 -99 3214 2912 210 71 0 0 chr12 113656199 113656227 -30130228 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 495 223 119 4 chr12 113656237 113656387 -30130068 + MIR SINE MIR 24 192 -63 568 142 277 0 chr12 113656401 113656549 -30129906 + MER53 DNA DNA 1 189 0 2249 65 28 10 chr12 113657030 113657321 -30129134 + AluY SINE Alu 1 296 -15 272 313 156 36 chr12 113657889 113658113 -30128342 - MIR SINE MIR -10 252 2 284 197 26 111 chr12 113658197 113658222 -30128233 + MIR SINE MIR 42 68 -140 1863 174 115 6 chr12 113658222 113658579 -30127876 + MSTD LTR MaLR 1 396 0 284 197 26 111 chr12 113658579 113658670 -30127785 + MIR SINE MIR 68 148 -60 431 291 123 68 chr12 113658779 113659267 -30127188 - L2 LINE L2 -18 3254 2740 400 335 159 6 chr12 113659267 113659437 -30127018 + MER91A DNA MER1_type 1 196 0 1003 81 0 27 chr12 113659696 113659845 -30126610 + Alu SINE Alu 166 310 0 321 312 16 32 chr12 113659857 113659982 -30126473 - MIR3 SINE MIR -83 125 3 189 0 0 0 chr12 113660760 113660781 -30125674 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1337 158 134 24 chr12 113660784 113661038 -30125417 - AluJo SINE Alu -30 282 1 191 266 188 0 chr12 113661291 113661355 -30125100 + MIR SINE MIR 15 90 -172 399 162 0 15 chr12 113661355 113661423 -30125032 - MLT1C LTR MaLR 0 467 401 257 223 117 76 chr12 113661430 113661627 -30124828 - MLT1C LTR MaLR -218 287 83 379 340 0 9 chr12 113661641 113661747 -30124708 + MIR SINE MIR 67 171 -91 193 233 0 23 chr12 113661812 113661855 -30124600 - L2 LINE L2 -18 3254 3213 3590 67 18 2 chr12 113662117 113662563 -30123892 + MLT2A2 LTR ERVL 1 453 0 197 325 34 43 chr12 113662788 113662905 -30123550 + MIR3 SINE MIR 44 159 -49 282 152 0 0 chr12 113663216 113663262 -30123193 - MLT2A2 LTR ERVL -56 397 352 186 297 81 0 chr12 113663433 113663507 -30122948 + L2 LINE L2 2761 2840 -474 459 321 10 25 chr12 113663537 113663733 -30122722 + L2 LINE L2 2921 3113 -200 * 636 200 124 7 chr12 113663716 113663861 -30122594 + MIR SINE MIR 98 259 -3 198 248 228 24 chr12 113663961 113664167 -30122288 - L2 LINE L2 -338 2976 2729 229 281 116 20 chr12 113664232 113664378 -30122077 + L2 LINE L2 1858 2017 -1297 2618 108 8 3 chr12 113664378 113664740 -30121715 - THE1B LTR MaLR 0 364 1 197 259 89 27 chr12 113664812 113664924 -30121531 + MIR SINE MIR 46 164 -98 300 287 20 50 chr12 113665852 113665953 -30120502 - MIR3 SINE MIR -23 185 88 1441 245 66 58 chr12 113665971 113666792 -30119663 - L2 LINE L2 0 3313 2487 393 296 128 23 chr12 113666834 113667217 -30119238 - MLT1K LTR MaLR 0 588 122 490 324 40 17 chr12 113668593 113668766 -30117689 + MIR SINE MIR 15 191 -71 200 305 85 43 chr12 113668783 113668924 -30117531 + L2 LINE L2 2245 2391 -923 245 170 57 0 chr12 113669405 113669458 -30116997 + L1MB5 LINE L1 5800 5855 -329 658 201 18 30 chr12 113669461 113669630 -30116825 + L1MB5 LINE L1 6008 6174 0 272 186 34 0 chr12 113669636 113669695 -30116760 + L1MB5 LINE L1 6114 6174 0 2317 153 97 36 chr12 113671093 113671389 -30115066 - MLT1D LTR MaLR 0 505 168 1368 168 137 11 chr12 113671389 113671651 -30114804 - AluJo SINE Alu -17 295 1 2317 153 97 36 chr12 113671651 113671830 -30114625 - MLT1D LTR MaLR -337 168 1 290 172 0 109 chr12 113672205 113672269 -30114186 + L2 LINE L2 3209 3265 -7 972 266 62 50 chr12 113672446 113672849 -30113606 + LTR16C LTR ERVL 82 489 -2 672 251 37 53 chr12 113672883 113673070 -30113385 - MIR SINE MIR 0 262 79 831 281 65 32 chr12 113674105 113674600 -30111855 - L1ME4a LINE L1 -109 6012 5502 206 222 0 0 chr12 113674673 113674709 -30111746 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 374 278 48 16 chr12 113674709 113674835 -30111620 - L1ME4a LINE L1 -1990 4156 4027 2193 93 4 4 chr12 113675434 113675712 -30110743 + AluSg SINE Alu 1 278 -32 1798 180 24 12 chr12 113675831 113676170 -30110285 + LTR32 LTR ERVL 10 352 -119 181 290 0 58 chr12 113676669 113676738 -30109717 + L2 LINE L2 3208 3272 0 190 318 135 40 chr12 113676806 113676932 -30109523 - MER5A DNA MER1_type -2 187 50 * 431 326 7 14 chr12 113676830 113676968 -30109487 + MER5A DNA MER1_type 50 186 -3 2930 6 0 16 chr12 113677108 113677429 -30109026 + AluYb8 SINE Alu 1 316 -2 478 204 120 7 chr12 113677728 113677869 -30108586 - LTR16C LTR ERVL 0 491 335 1497 215 29 6 chr12 113677869 113678213 -30108242 - MLT1A1 LTR MaLR 0 365 14 971 247 144 0 chr12 113678225 113678516 -30107939 - LTR16C LTR ERVL -158 333 1 1943 152 3 19 chr12 113678684 113679000 -30107455 + AluJo SINE Alu 1 311 -1 492 307 21 46 chr12 113679476 113679717 -30106738 + L2 LINE L2 3079 3313 0 295 238 129 34 chr12 113679772 113679919 -30106536 - L1ME LINE L1 -347 5774 5614 954 204 36 0 chr12 113679932 113680128 -30106327 + MER3 DNA MER1_type 7 209 0 208 308 141 13 chr12 113680830 113680908 -30105547 + L2 LINE L2 3216 3303 -10 276 157 0 0 chr12 113680908 113680959 -30105496 + L1MA4 LINE L1 6250 6300 0 1108 230 143 46 chr12 113681238 113681490 -30104965 - MLT1D LTR MaLR -8 497 271 2345 117 0 16 chr12 113681490 113681807 -30104648 - AluSx SINE Alu 0 312 1 1108 230 143 46 chr12 113681807 113682007 -30104448 - MLT1D LTR MaLR -234 271 1 581 275 0 7 chr12 113683794 113683943 -30102512 - L1MA10 LINE L1 -26 6308 6161 239 339 18 18 chr12 113683991 113684100 -30102355 + L2 LINE L2 2688 2796 -518 508 311 64 63 chr12 113684325 113684828 -30101627 + L2 LINE L2 2792 3312 -1 202 316 25 0 chr12 113684828 113684907 -30101548 + GA-rich Low_complexity Low_complexity 3 83 0 401 272 95 6 chr12 113684957 113685115 -30101340 - MIR SINE MIR -43 219 48 200 214 0 24 chr12 113685204 113685246 -30101209 - MER5A DNA MER1_type -2 187 147 3768 69 4 0 chr12 113685256 113685736 -30100719 + L1PA10 LINE L1 5683 6164 -4 1911 186 0 6 chr12 113685763 113686075 -30100380 + AluJb SINE Alu 3 312 0 231 349 37 28 chr12 113686089 113686198 -30100257 - MER5A DNA MER1_type -34 155 46 300 250 73 0 chr12 113686252 113686320 -30100135 + L2 LINE L2 3200 3272 0 2009 159 46 6 chr12 113686927 113687278 -30099177 - MLT1A1 LTR MaLR 0 365 1 253 155 6 23 chr12 113687391 113687464 -30098991 + Alu SINE Alu 1 43 -259 722 227 50 7 chr12 113687538 113687787 -30098668 - L2 LINE L2 -297 3016 2761 335 275 58 43 chr12 113688629 113688767 -30097688 - MIR SINE MIR -91 171 32 240 280 40 0 chr12 113689341 113689416 -30097039 - L2 LINE L2 -44 3269 3192 297 374 35 17 chr12 113689417 113689532 -30096923 - L2 LINE L2 0 3272 3156 862 194 204 28 chr12 113689737 113689953 -30096502 - MLT1D LTR MaLR -2 503 250 779 225 60 11 chr12 113690760 113690942 -30095513 - MER117 DNA MER1_type -3 194 4 607 262 231 38 chr12 113691514 113691901 -30094554 + L2 LINE L2 2792 3271 -42 1345 132 47 19 chr12 113691901 113692114 -30094341 - MER20 DNA MER1_type 0 219 1 607 262 231 38 chr12 113692114 113692168 -30094287 + L2 LINE L2 3271 3313 0 305 280 32 32 chr12 113692467 113692560 -30093895 + MIR SINE MIR 169 261 -1 397 302 14 36 chr12 113692625 113692764 -30093691 - MIR3 SINE MIR -54 154 19 1842 186 0 7 chr12 113694116 113694404 -30092051 + AluJb SINE Alu 1 288 -24 396 0 0 0 chr12 113694404 113694448 -30092007 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1842 186 0 7 chr12 113694448 113694466 -30091989 + AluJb SINE Alu 288 305 -7 231 251 22 153 chr12 113694537 113694720 -30091735 + MIR3 SINE MIR 42 200 -8 776 284 125 31 chr12 113694815 113695359 -30091096 + L2 LINE L2 2726 3313 0 193 245 75 0 chr12 113695540 113695593 -30090862 + MIR3 SINE MIR 152 208 0 312 215 298 78 chr12 113695725 113695930 -30090525 - MIR SINE MIR 0 262 13 1399 294 9 29 chr12 113695993 113696370 -30090085 + LTR16A LTR ERVL 7 390 -60 189 0 0 0 chr12 113696370 113696391 -30090064 + (GA)n Simple_repeat Simple_repeat 1 21 0 324 0 0 0 chr12 113696396 113696432 -30090023 + (TG)n Simple_repeat Simple_repeat 2 37 0 1399 294 9 29 chr12 113696432 113696497 -30089958 + LTR16A LTR ERVL 394 446 -4 723 278 41 10 chr12 113697331 113697525 -30088930 - MIR SINE MIR -3 259 60 659 243 95 33 chr12 113697973 113698216 -30088239 + MIR SINE MIR 2 259 -3 2640 110 3 6 chr12 113698245 113698610 -30087845 + THE1B LTR MaLR 1 364 0 184 311 123 19 chr12 113698661 113698767 -30087688 - L2 LINE L2 -1 3271 3155 258 265 83 38 chr12 113698803 113698935 -30087520 + MIR SINE MIR 38 175 -87 193 245 75 0 chr12 113698991 113699044 -30087411 + MIR3 SINE MIR 152 208 0 237 190 52 69 chr12 113699505 113699563 -30086892 - MIR SINE MIR -68 140 89 274 220 77 44 chr12 113699933 113700024 -30086431 + Charlie7 DNA MER1_type 2519 2612 0 534 237 124 40 chr12 113700040 113700289 -30086166 + L2 LINE L2 3044 3313 0 275 327 210 8 chr12 113700362 113700610 -30085845 - L2 LINE L2 -165 3107 2810 944 237 40 12 chr12 113700685 113700938 -30085517 + MIR SINE MIR 2 261 -1 487 280 168 36 chr12 113700939 113701189 -30085266 - L2 LINE L2 -4 3309 3027 1237 59 0 0 chr12 113701387 113701557 -30084898 - L1P LINE L1 -1740 4406 4237 2860 51 0 6 chr12 113701557 113701907 -30084548 + L1PA7 LINE L1 5807 6154 0 983 266 52 20 chr12 113702332 113702584 -30083871 + MIR SINE MIR 2 261 -1 184 289 67 39 chr12 113702629 113702733 -30083722 + MIR SINE MIR 156 262 0 488 336 136 14 chr12 113703105 113703325 -30083130 - MIR SINE MIR -6 256 10 1024 257 138 6 chr12 113703465 113703784 -30082671 - LTR16A LTR ERVL 0 450 90 506 245 78 59 chr12 113704116 113704320 -30082135 - L2 LINE L2 0 3313 3106 270 146 247 11 chr12 113704953 113705042 -30081413 + MIR SINE MIR 37 146 -62 564 286 132 45 chr12 113705084 113705441 -30081014 + L2 LINE L2 2920 3307 -6 348 24 0 0 chr12 113705873 113705914 -30080541 + (TG)n Simple_repeat Simple_repeat 1 41 0 2592 70 0 0 chr12 113705958 113706260 -30080195 - AluSq SINE Alu -11 302 1 511 286 53 23 chr12 113706387 113706558 -30079897 - L2 LINE L2 -10 3303 3128 228 262 0 33 chr12 113706608 113706669 -30079786 - L2 LINE L2 0 3272 3214 442 222 15 26 chr12 113706876 113706943 -30079512 + CT-rich Low_complexity Low_complexity 1 67 -656 2413 103 3 0 chr12 113706943 113707254 -30079201 - AluSx SINE Alu 0 312 1 442 222 15 26 chr12 113707254 113707608 -30078847 + CT-rich Low_complexity Low_complexity 67 723 0 241 236 18 0 chr12 113707748 113707803 -30078652 + MIR SINE MIR 189 244 -18 270 251 299 43 chr12 113708272 113708479 -30077976 - MIR SINE MIR -1 261 2 592 256 114 37 chr12 113708561 113708807 -30077648 - MLT1H1 LTR MaLR 0 555 291 426 79 0 0 chr12 113708817 113708880 -30077575 + (TG)n Simple_repeat Simple_repeat 2 64 0 299 262 12 12 chr12 113709063 113709147 -30077308 - MLT1F LTR MaLR -458 84 1 647 248 48 39 chr12 113709214 113709420 -30077035 - MIR SINE MIR -52 210 3 603 265 34 91 chr12 113709780 113709851 -30076604 - MIR SINE MIR -5 257 184 2320 125 0 0 chr12 113709851 113710154 -30076301 + AluSx SINE Alu 1 303 -9 603 265 34 91 chr12 113710154 113710346 -30076109 - MIR SINE MIR -78 184 9 268 308 110 0 chr12 113710526 113710617 -30075838 - MIR SINE MIR -66 142 42 187 100 25 25 chr12 113710804 113710844 -30075611 + (TG)n Simple_repeat Simple_repeat 1 40 0 536 319 101 5 chr12 113710923 113711130 -30075325 + MIR SINE MIR 24 250 -12 325 340 139 12 chr12 113711366 113711805 -30074650 + L2 LINE L2 2770 3267 -5 324 191 0 127 chr12 113712518 113712628 -30073827 + L2 LINE L2 3175 3270 -2 2408 92 0 0 chr12 113712632 113712937 -30073518 + AluY SINE Alu 1 305 -6 297 297 81 18 chr12 113712940 113713051 -30073404 - MIR SINE MIR -130 132 15 277 382 40 7 chr12 113713144 113713296 -30073159 - MIR SINE MIR -58 204 48 914 220 131 0 chr12 113713551 113713765 -30072690 + MIR SINE MIR 18 259 -3 246 253 0 58 chr12 113714780 113714867 -30071588 - MIR SINE MIR -116 146 65 325 294 150 0 chr12 113715311 113715454 -30071001 + MIR SINE MIR 39 206 -56 21 0 0 0 chr12 113715564 113715585 -30070870 + AT_rich Low_complexity Low_complexity 1 21 0 303 302 61 19 chr12 113715873 113716022 -30070433 - L1MB8 LINE L1 -205 5959 5804 663 307 80 38 chr12 113716104 113716451 -30070004 - L1MB8 LINE L1 -519 5651 5320 213 65 0 0 chr12 113716451 113716482 -30069973 + (TG)n Simple_repeat Simple_repeat 2 32 0 663 307 80 38 chr12 113716482 113716943 -30069512 - L1MB8 LINE L1 -850 5320 4806 2567 75 8 0 chr12 113718734 113719093 -30067362 - L1PA8 LINE L1 -208 5964 5603 473 262 87 0 chr12 113719178 113719304 -30067151 - MER5A DNA MER1_type -52 137 1 365 266 119 35 chr12 113719399 113719542 -30066913 + MIR SINE MIR 108 262 0 710 206 103 54 chr12 113720978 113721162 -30065293 - MIR SINE MIR -13 195 3 381 272 82 8 chr12 113721174 113721333 -30065122 + MIR SINE MIR 23 197 -65 323 325 53 16 chr12 113721958 113722154 -30064301 - MIR SINE MIR -14 248 42 278 221 117 48 chr12 113722311 113722456 -30063999 + MIR SINE MIR 98 252 -10 2445 103 0 0 chr12 113722734 113723046 -30063409 + AluSx SINE Alu 1 312 0 486 296 33 49 chr12 113723686 113723923 -30062532 - MIR SINE MIR -27 235 4 499 228 39 24 chr12 113724001 113724128 -30062327 + MER91C DNA MER1_type 9 137 -3 397 296 49 14 chr12 113724668 113724810 -30061645 + MIR3 SINE MIR 19 165 -43 793 207 87 58 chr12 113724851 113725093 -30061362 + MIR SINE MIR 2 250 -12 1044 170 0 24 chr12 113725136 113725301 -30061154 + FRAM SINE Alu 1 160 -16 610 203 86 61 chr12 113725469 113725666 -30060789 - L2 LINE L2 0 3313 3112 729 225 55 35 chr12 113725773 113725973 -30060482 + MIR SINE MIR 22 225 -37 691 205 73 7 chr12 113725976 113726127 -30060328 + MIR SINE MIR 81 241 -21 346 202 42 109 chr12 113726142 113726261 -30060194 - MLT1H LTR MaLR -9 546 436 575 253 90 36 chr12 113726315 113726592 -30059863 - MLT1H LTR MaLR -237 312 21 311 254 203 0 chr12 113727374 113727492 -30058963 - MIR SINE MIR -3 259 118 258 222 13 41 chr12 113727582 113727661 -30058794 + MIR SINE MIR 20 93 -115 408 344 126 16 chr12 113727667 113727914 -30058541 - L2 LINE L2 0 3272 2999 266 243 14 0 chr12 113727927 113727997 -30058458 + CT-rich Low_complexity Low_complexity 2 72 0 445 250 10 0 chr12 113727997 113728097 -30058358 + MLT1G3 LTR MaLR 153 253 -277 291 243 14 27 chr12 113728098 113728172 -30058283 - MER45A DNA AcHobo 0 178 106 2710 93 61 2 chr12 113728172 113728725 -30057730 + L1PA10 LINE L1 5525 6167 -1 650 219 0 34 chr12 113728753 113728899 -30057556 - MER45A DNA AcHobo -35 143 3 21 0 0 0 chr12 113729078 113729099 -30057356 + AT_rich Low_complexity Low_complexity 1 21 0 473 316 206 24 chr12 113729118 113729792 -30056663 - L2 LINE L2 -337 2977 2181 325 183 0 157 chr12 113729810 113729871 -30056584 - MER3 DNA MER1_type 0 209 173 1913 123 3 40 chr12 113729871 113730172 -30056283 + AluSx SINE Alu 1 290 -22 325 183 0 157 chr12 113730172 113730225 -30056230 - MER3 DNA MER1_type -36 173 113 227 291 9 64 chr12 113730264 113730374 -30056081 + MIR SINE MIR 156 259 -3 592 304 11 11 chr12 113730999 113731180 -30055275 - MIR SINE MIR -3 259 79 233 293 155 9 chr12 113731353 113731469 -30054986 - MIR3 SINE MIR -4 204 72 275 346 5 87 chr12 113731689 113731850 -30054605 + MER5A DNA MER1_type 18 164 -25 2713 30 0 0 chr12 113731850 113732148 -30054307 + AluY SINE Alu 1 298 -13 275 346 5 87 chr12 113732148 113732171 -30054284 + MER5A DNA MER1_type 164 187 -2 314 237 0 0 chr12 113732195 113732254 -30054201 - MIR SINE MIR -125 137 79 429 180 0 125 chr12 113732535 113732563 -30053892 + MER103 DNA DNA 15 45 -121 538 215 133 19 chr12 113732563 113732721 -30053734 + MER5B DNA MER1_type 2 177 -1 429 180 0 125 chr12 113732721 113732820 -30053635 + MER103 DNA DNA 45 126 -40 312 259 0 25 chr12 113733173 113733254 -30053201 + L2 LINE L2 2687 2765 -549 354 308 39 77 chr12 113733511 113733564 -30052891 + L2 LINE L2 2812 2865 -407 2202 133 13 3 chr12 113733564 113733872 -30052583 - AluSx SINE Alu -1 311 1 354 308 39 77 chr12 113733872 113734273 -30052182 + L2 LINE L2 2865 3267 -5 1569 94 5 9 chr12 113734284 113734496 -30051959 + AluY SINE Alu 1 211 -100 539 287 20 4 chr12 113734908 113735097 -30051358 + MIR SINE MIR 1 191 -62 2237 111 3 3 chr12 113735322 113735620 -30050835 - AluSq SINE Alu -15 298 1 297 276 43 17 chr12 113736178 113736294 -30050161 - MIR SINE MIR -32 230 112 1181 122 17 6 chr12 113736808 113736980 -30049475 - AluSx SINE Alu -2 308 135 500 103 0 0 chr12 113736980 113737048 -30049407 - AluSx SINE Alu -244 69 2 220 351 38 9 chr12 113737204 113737324 -30049131 + MIR SINE MIR 19 142 -66 395 268 78 73 chr12 113737754 113737836 -30048619 + MIR SINE MIR 76 156 -106 1582 183 35 3 chr12 113737836 113738120 -30048335 - AluJo SINE Alu -19 293 1 395 268 78 73 chr12 113738120 113738216 -30048239 + MIR SINE MIR 156 255 -7 1282 212 55 53 chr12 113738445 113738993 -30047462 - LTR29 LTR ERV1 0 598 79 237 167 15 76 chr12 113738987 113739053 -30047402 - LTR29 LTR ERV1 -424 198 137 * 315 292 0 0 chr12 113739056 113739152 -30047303 - MER34 LTR ERV1 -446 96 1 243 335 126 42 chr12 113739638 113739948 -30046507 + L2 LINE L2 2641 2976 -338 224 350 0 58 chr12 113740011 113740148 -30046307 - MIR SINE MIR 0 262 134 191 359 0 0 chr12 113740201 113740254 -30046201 + L2 LINE L2 3111 3163 -109 1055 276 60 76 chr12 113740259 113740381 -30046074 - L2 LINE L2 0 3313 3191 2614 40 7 0 chr12 113740381 113740684 -30045771 - AluY SINE Alu -6 305 1 1055 276 60 76 chr12 113740684 113740747 -30045708 - L2 LINE L2 -122 3191 3128 2011 111 39 16 chr12 113740747 113741053 -30045402 + AluSq SINE Alu 1 313 0 1055 276 60 76 chr12 113741053 113741458 -30044997 - L2 LINE L2 -185 3128 2739 2272 152 3 16 chr12 113741458 113741826 -30044629 + MLT1A1 LTR MaLR 1 363 -2 1055 276 60 76 chr12 113741826 113742209 -30044246 - L2 LINE L2 -574 2739 2351 496 226 49 10 chr12 113742226 113742328 -30044127 + L2 LINE L2 3208 3313 0 601 203 81 0 chr12 113742428 113742586 -30043869 - MER45A DNA AcHobo 0 178 1 510 232 22 81 chr12 113743025 113743210 -30043245 - MIR SINE MIR 0 262 89 412 285 49 0 chr12 113743267 113743390 -30043065 - MIR SINE MIR -109 153 25 187 261 138 0 chr12 113743393 113743458 -30042997 + MIR SINE MIR 34 107 -155 260 316 61 10 chr12 113743634 113743732 -30042723 + L2 LINE L2 3139 3241 -31 1216 217 46 94 chr12 113743735 113744191 -30042264 - MLT1H LTR MaLR 0 549 116 956 233 20 40 chr12 113744262 113744421 -30042034 - MIR SINE MIR -2 260 106 3457 144 41 4 chr12 113744421 113744929 -30041526 + MER1A DNA MER1_type 1 527 0 956 233 20 40 chr12 113744929 113745022 -30041433 - MIR SINE MIR -156 106 13 2286 100 7 7 chr12 113745031 113745331 -30041124 - AluSq SINE Alu -3 310 11 537 285 55 25 chr12 113745521 113745721 -30040734 + MIR SINE MIR 9 214 -48 252 0 0 0 chr12 113746402 113746430 -30040025 + (T)n Simple_repeat Simple_repeat 1 28 0 198 273 91 55 chr12 113746897 113747007 -30039448 - L2 LINE L2 -14 3258 3145 710 269 42 19 chr12 113747089 113747301 -30039154 + MIR SINE MIR 8 224 -38 2293 129 6 23 chr12 113747311 113747653 -30038802 + MER1B DNA MER1_type 2 337 0 311 224 38 1 chr12 113747725 113747815 -30038640 - L1ME1 LINE L1 -51 6115 6035 2588 130 16 34 chr12 113747901 113748510 -30037945 - L1MB8 LINE L1 0 6178 5435 554 278 91 5 chr12 113748526 113748724 -30037731 - L1ME1 LINE L1 -177 5989 5775 184 329 41 14 chr12 113749386 113749459 -30036996 - MIR SINE MIR -121 141 67 296 242 99 0 chr12 113749562 113749653 -30036802 + MER113 DNA MER1_type? 1 100 -421 233 383 17 17 chr12 113749884 113749999 -30036456 + L2 LINE L2 3156 3270 -2 197 267 0 0 chr12 113750521 113750566 -30035889 - L2 LINE L2 -11 3261 3217 1644 195 0 10 chr12 113751037 113751329 -30035126 + AluJo SINE Alu 23 311 -1 255 111 32 32 chr12 113751642 113751705 -30034750 + CT-rich Low_complexity Low_complexity 2 64 0 1336 229 97 37 chr12 113751728 113752182 -30034273 - L2 LINE L2 -14 3299 2819 449 196 20 77 chr12 113752217 113752285 -30034170 + MER5A DNA MER1_type 52 123 -66 1859 160 17 0 chr12 113752285 113752579 -30033876 - AluSx SINE Alu -13 299 1 449 196 20 77 chr12 113752579 113752640 -30033815 + MER5A DNA MER1_type 123 186 -3 462 226 29 0 chr12 113752923 113753025 -30033430 - MIR3 SINE MIR -5 203 99 301 224 0 0 chr12 113753427 113753485 -30032970 - MIR SINE MIR -115 147 90 246 243 27 27 chr12 113753615 113753689 -30032766 + CT-rich Low_complexity Low_complexity 5 78 0 299 316 75 43 chr12 113753878 113754065 -30032390 - L2 LINE L2 -214 3058 2866 1693 151 3 108 chr12 113754445 113754777 -30031678 - AluJb SINE Alu -15 297 1 840 271 133 19 chr12 113754827 113755255 -30031200 - L1ME4a LINE L1 -24 6097 5621 2128 149 14 30 chr12 113755460 113755829 -30030626 + MLT1A1 LTR MaLR 1 363 -2 1931 160 3 0 chr12 113756197 113756490 -30029965 + AluJo SINE Alu 1 294 -18 714 318 51 0 chr12 113756494 113756711 -30029744 - MIR SINE MIR -24 238 11 719 257 34 11 chr12 113757529 113757708 -30028747 + MIR SINE MIR 3 185 -77 403 227 0 0 chr12 113757710 113757798 -30028657 - MLT1I LTR MaLR -7 402 315 2229 118 0 13 chr12 113757962 113758277 -30028178 - AluSx SINE Alu -1 311 1 26 0 0 0 chr12 113758528 113758554 -30027901 + AT_rich Low_complexity Low_complexity 1 26 0 237 222 99 62 chr12 113758578 113758659 -30027796 + L3 LINE CR1 1363 1446 -131 772 291 31 24 chr12 113758709 113758963 -30027492 + MIR SINE MIR 7 262 0 287 221 158 31 chr12 113758989 113759116 -30027339 + MIR SINE MIR 106 248 -14 188 323 129 11 chr12 113759216 113759309 -30027146 + MIR SINE MIR 158 261 -1 217 275 38 62 chr12 113759865 113759945 -30026510 + L2 LINE L2 3193 3270 -2 1939 138 10 10 chr12 113761013 113761325 -30025130 - AluSx SINE Alu 0 312 1 957 254 118 45 chr12 113761598 113761972 -30024483 - MLT1I LTR MaLR -8 401 1 867 331 41 24 chr12 113761984 113762900 -30023555 - L1M4 LINE L1 -392 5782 4852 2104 119 3 16 chr12 113762913 113763223 -30023232 - AluSq SINE Alu -7 306 1 603 280 76 36 chr12 113763909 113764134 -30022321 + MIR SINE MIR 19 252 -10 503 287 105 24 chr12 113764247 113764456 -30021999 - MIR SINE MIR -16 246 21 353 265 144 0 chr12 113764601 113764733 -30021722 - MIR3 SINE MIR -7 201 51 750 218 18 24 chr12 113765176 113765341 -30021114 - MIR SINE MIR -70 192 29 933 246 180 15 chr12 113765392 113765725 -30020730 - L2 LINE L2 0 3313 2926 444 239 45 45 chr12 113766223 113766357 -30020098 + MIR SINE MIR 18 151 -57 2035 126 10 16 chr12 113766430 113766740 -30019715 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 113766871 113766894 -30019561 + AT_rich Low_complexity Low_complexity 1 23 0 1388 201 78 31 chr12 113766925 113766996 -30019459 + MLT1C LTR MaLR 51 117 -350 2419 113 25 6 chr12 113766996 113767350 -30019105 - THE1B LTR MaLR 0 364 4 1388 201 78 31 chr12 113767350 113767637 -30018818 + MLT1C LTR MaLR 117 426 -41 643 239 6 12 chr12 113768522 113769024 -30017431 + (ATGGTG)n Simple_repeat Simple_repeat 1 499 0 679 221 0 11 chr12 113769024 113769205 -30017250 + (ATG)n Simple_repeat Simple_repeat 1 179 0 739 199 9 13 chr12 113769208 113769444 -30017011 + (ATGGTG)n Simple_repeat Simple_repeat 1 235 0 991 270 4 4 chr12 113769459 113769689 -30016766 - MIR SINE MIR -19 243 14 237 337 105 0 chr12 113769761 113769856 -30016599 - MIR SINE MIR -33 229 125 372 261 90 30 chr12 113769932 113770066 -30016389 + MIR3 SINE MIR 33 174 -34 468 0 0 0 chr12 113770263 113770315 -30016140 + (TG)n Simple_repeat Simple_repeat 2 53 0 705 240 78 75 chr12 113770324 113770361 -30016094 - L2 LINE L2 -255 3058 3023 1852 194 0 0 chr12 113770361 113770665 -30015790 - AluJo SINE Alu -8 304 1 705 240 78 75 chr12 113770665 113770820 -30015635 - L2 LINE L2 -290 3023 2863 946 208 0 91 chr12 113770820 113771004 -30015451 + MER20 DNA MER1_type 1 159 -60 252 0 0 0 chr12 113771004 113771032 -30015423 + (CA)n Simple_repeat Simple_repeat 2 29 0 946 208 0 91 chr12 113771032 113771088 -30015367 + MER20 DNA MER1_type 159 219 0 705 240 78 75 chr12 113771088 113771173 -30015282 - L2 LINE L2 -450 2863 2780 196 202 164 58 chr12 113771315 113771419 -30015036 - MIR SINE MIR -126 136 22 413 268 176 26 chr12 113771421 113771574 -30014881 + L2 LINE L2 3094 3269 -3 299 308 22 22 chr12 113771979 113772070 -30014385 - L2 LINE L2 0 3272 3182 207 321 24 24 chr12 113772875 113772959 -30013496 - L2 LINE L2 -212 3060 2977 412 259 37 0 chr12 113772960 113773068 -30013387 + MER46C DNA MER2_type 220 331 -7 228 304 0 39 chr12 113773074 113773176 -30013279 + MIR SINE MIR 153 250 -12 219 125 0 0 chr12 113773661 113773701 -30012754 + (CA)n Simple_repeat Simple_repeat 1 40 0 406 263 276 0 chr12 113774705 113774861 -30011594 - L2 LINE L2 -10 3303 3105 272 245 0 102 chr12 113774933 113775031 -30011424 + MIR SINE MIR 83 170 -92 661 323 1 32 chr12 113775373 113775603 -30010852 + MIR SINE MIR 10 232 -30 338 213 163 0 chr12 113775703 113775783 -30010672 + MIR SINE MIR 154 246 -16 290 211 0 28 chr12 113775791 113775862 -30010593 + MER116 DNA Mariner 2 70 -10 1342 40 11 6 chr12 113775906 113776083 -30010372 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1816 178 3 0 chr12 113776089 113776392 -30010063 - AluSx SINE Alu -8 304 1 213 196 36 18 chr12 113776979 113777035 -30009420 + L2 LINE L2 3168 3224 -48 661 246 77 11 chr12 113777181 113777364 -30009091 - MIR SINE MIR -3 259 65 202 188 0 0 chr12 113777498 113777530 -30008925 + polypurine Low_complexity Low_complexity 3 34 0 347 269 7 87 chr12 113777544 113777693 -30008762 - MIR SINE MIR 0 262 126 204 303 45 30 chr12 113777982 113778048 -30008407 - MIR SINE MIR -57 151 85 979 234 9 22 chr12 113778482 113778709 -30007746 + MIR SINE MIR 16 239 -23 1260 224 134 57 chr12 113779202 113779416 -30007039 - L1ME3A LINE L1 -3 6167 5971 1791 114 4 0 chr12 113779416 113779671 -30006784 - AluSx SINE Alu -19 293 38 1260 224 134 57 chr12 113779671 113779845 -30006610 - L1ME3A LINE L1 -199 5971 5812 2022 102 65 3 chr12 113779845 113780138 -30006317 - AluSx SINE Alu -1 311 1 1260 224 134 57 chr12 113780138 113780257 -30006198 - L1ME3A LINE L1 -358 5812 5620 228 337 45 0 chr12 113781324 113781413 -30005042 + MIR SINE MIR 104 196 -66 273 265 24 0 chr12 113781526 113781609 -30004846 + L2 LINE L2 2622 2706 -608 390 209 15 97 chr12 113781703 113781837 -30004618 - MIR SINE MIR -51 211 89 218 319 23 11 chr12 113782457 113782573 -30003882 + MIR SINE MIR 36 152 -66 187 308 31 15 chr12 113782785 113782850 -30003605 + L2 LINE L2 3123 3188 -84 198 0 0 0 chr12 113782867 113782889 -30003566 + (TG)n Simple_repeat Simple_repeat 2 23 0 219 32 32 0 chr12 113782980 113783011 -30003444 + L2 LINE L2 3274 3305 -8 212 172 17 0 chr12 113783657 113783715 -30002740 + T-rich Low_complexity Low_complexity 5 63 0 281 313 0 24 chr12 113784441 113784524 -30001931 + L2 LINE L2 3187 3267 -5 840 217 77 24 chr12 113785411 113785618 -30000837 + MIR SINE MIR 45 262 0 215 240 0 0 chr12 113785770 113785820 -30000635 - MIR SINE MIR -13 249 200 385 288 157 0 chr12 113785868 113786021 -30000434 - MIR SINE MIR -74 188 12 288 324 132 18 chr12 113786122 113786434 -30000021 - L2 LINE L2 -233 3039 2685 350 328 114 8 chr12 113786504 113786635 -29999820 - MIR SINE MIR -80 128 4 566 199 0 16 chr12 113787067 113787225 -29999230 + MER20 DNA MER1_type 1 219 0 324 161 9 143 chr12 113787548 113787660 -29998795 - MIR3 SINE MIR -22 186 90 647 306 184 16 chr12 113787669 113787937 -29998518 - MLT1K LTR MaLR 0 588 366 477 50 0 0 chr12 113787937 113787997 -29998458 + (TC)n Simple_repeat Simple_repeat 1 60 0 647 306 184 16 chr12 113787997 113788222 -29998233 - MLT1K LTR MaLR -222 366 12 1470 174 3 85 chr12 113788814 113788910 -29997545 - AluJb SINE Alu 0 377 275 1150 89 6 11 chr12 113788910 113789089 -29997366 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1470 174 3 85 chr12 113789089 113789397 -29997058 - AluJb SINE Alu -102 275 1 1636 183 3 16 chr12 113789739 113790045 -29996410 - AluJo SINE Alu -10 302 1 1679 263 113 57 chr12 113790121 113791049 -29995406 - L2 LINE L2 -20 3293 2295 346 358 16 11 chr12 113791088 113791275 -29995180 - MIR SINE MIR -55 207 20 828 172 121 0 chr12 113792097 113792271 -29994184 + MSTB2 LTR MaLR 1 195 -262 676 159 254 0 chr12 113792383 113792521 -29993934 + MER58A DNA MER1_type 45 217 -7 626 156 0 0 chr12 113792598 113792688 -29993767 - 5S rRNA rRNA -31 90 1 958 264 44 0 chr12 113792804 113793031 -29993424 - MIR SINE MIR 0 262 26 223 163 20 20 chr12 113793048 113793097 -29993358 - MIR SINE MIR -101 161 113 301 275 46 18 chr12 113793226 113793335 -29993120 + L2 LINE L2 3143 3254 -18 245 324 67 38 chr12 113794193 113794298 -29992157 + MIR SINE MIR 13 120 -142 480 230 43 29 chr12 113794301 113794441 -29992014 + L1ME1 LINE L1 6034 6334 0 382 300 42 0 chr12 113794449 113794569 -29991886 + MIR SINE MIR 114 238 -24 584 117 19 10 chr12 113794725 113794828 -29991627 - L1MB3 LINE L1 -15 6168 6065 328 275 94 84 chr12 113795174 113795291 -29991164 + L1ME LINE L1 5482 5596 -525 1930 123 7 0 chr12 113795291 113795606 -29990849 + AluSx SINE Alu 1 317 0 328 275 94 84 chr12 113795606 113795807 -29990648 + L1ME LINE L1 5596 5804 -317 869 159 45 6 chr12 113795816 113795973 -29990482 - FRAM SINE Alu -13 163 1 216 0 0 0 chr12 113795973 113795997 -29990458 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 470 275 79 32 chr12 113796887 113797076 -29989379 - MIR SINE MIR -36 226 29 324 333 76 7 chr12 113797438 113797582 -29988873 - L2 LINE L2 0 3272 3119 1921 147 0 0 chr12 113797603 113797895 -29988560 + AluSx SINE Alu 11 302 -10 1251 161 18 9 chr12 113797985 113798203 -29988252 - LTR26B LTR ERV1 -66 465 246 2166 194 33 13 chr12 113799618 113800076 -29986379 + MLT1C LTR MaLR 1 467 0 680 233 45 45 chr12 113801827 113802003 -29984452 + MIR SINE MIR 83 258 -4 975 261 40 0 chr12 113802704 113802930 -29983525 - MIR SINE MIR -15 247 13 240 235 0 0 chr12 113803108 113803159 -29983296 + MIR SINE MIR 189 239 -23 392 198 38 19 chr12 113803168 113803325 -29983130 + (CACCAT)n Simple_repeat Simple_repeat 2 161 0 645 235 0 0 chr12 113803354 113803533 -29982922 + (CAT)n Simple_repeat Simple_repeat 2 180 0 407 160 25 25 chr12 113803521 113803640 -29982815 + (CACCAT)n Simple_repeat Simple_repeat 1 119 0 * 197 282 39 26 chr12 113803640 113803718 -29982737 + L2 LINE L2 3194 3272 0 1331 192 32 52 chr12 113804460 113804928 -29981527 - MLT1D LTR MaLR -2 503 3 263 281 192 7 chr12 113805037 113805183 -29981272 + MIR SINE MIR 83 255 -7 254 73 24 0 chr12 113805415 113805456 -29980999 + (TG)n Simple_repeat Simple_repeat 1 42 0 1561 169 82 25 chr12 113805548 113805732 -29980723 - THE1C LTR MaLR 0 375 203 2089 137 0 0 chr12 113805732 113806038 -29980417 - AluSx SINE Alu -6 306 1 1561 169 82 25 chr12 113806038 113806208 -29980247 - THE1C LTR MaLR -172 203 1 215 243 50 29 chr12 113806543 113806628 -29979827 + MIR SINE MIR 32 120 -88 198 154 96 58 chr12 113806704 113806756 -29979699 + MER5B DNA MER1_type 1 54 -124 288 298 63 52 chr12 113806814 113807005 -29979450 + L2 LINE L2 2642 2834 -480 989 189 4 96 chr12 113807009 113807258 -29979197 + MIR SINE MIR 23 248 -14 1991 140 3 3 chr12 113807470 113807770 -29978685 + AluSx SINE Alu 1 300 -12 642 198 6 80 chr12 113807995 113808120 -29978335 - MER5B DNA MER1_type 0 178 66 2001 129 0 17 chr12 113808120 113808422 -29978033 - AluSx SINE Alu -15 297 1 642 198 6 80 chr12 113808422 113808458 -29977997 - MER5B DNA MER1_type -112 66 29 624 228 18 48 chr12 113808458 113808625 -29977830 + MER106A DNA MER1_type 1 162 -74 2160 146 0 26 chr12 113808638 113808981 -29977474 + MER1B DNA MER1_type 3 336 -1 2918 171 25 23 chr12 113809011 113809537 -29976918 - MER74A LTR ERVL -27 531 5 1918 133 33 0 chr12 113809537 113809839 -29976616 + AluJb SINE Alu 1 312 0 288 141 115 77 chr12 113809881 113809959 -29976496 + MER106A DNA MER1_type 156 236 0 279 257 0 57 chr12 113810909 113811014 -29975441 - MER113 DNA MER1_type? -122 399 301 279 278 52 46 chr12 113811286 113811459 -29974996 + L1M4 LINE L1 4643 4816 -1330 4273 76 12 5 chr12 113811652 113812218 -29974237 - L1PA13 LINE L1 -72 6091 5522 345 322 72 11 chr12 113812242 113812602 -29973853 + L1M4 LINE L1 5010 5391 -755 380 241 99 7 chr12 113812745 113812886 -29973569 + L2 LINE L2 3160 3313 0 269 265 93 104 chr12 113813665 113813933 -29972522 + L2 LINE L2 2804 3068 -204 489 156 0 0 chr12 113814099 113814195 -29972260 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 348 244 78 35 chr12 113814197 113814312 -29972143 + L2 LINE L2 3192 3311 -2 198 103 0 0 chr12 113814336 113814365 -29972090 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 2147 97 19 10 chr12 113814492 113814800 -29971655 - AluY SINE Alu 0 311 1 209 283 21 110 chr12 113815540 113815731 -29970724 - L2 LINE L2 -93 3179 3006 417 320 102 0 chr12 113815981 113816178 -29970277 - MIR SINE MIR -2 260 44 860 265 46 71 chr12 113816520 113816685 -29969770 - L2 LINE L2 -110 3203 3048 1731 155 0 23 chr12 113816685 113816995 -29969460 + AluJb SINE Alu 1 303 -9 860 265 46 71 chr12 113816995 113817153 -29969302 - L2 LINE L2 -265 3048 2888 1765 218 100 30 chr12 113817341 113817850 -29968605 - MLT1H LTR MaLR -1 548 4 229 227 136 23 chr12 113818596 113818684 -29967771 + L2 LINE L2 3154 3251 -21 762 266 11 73 chr12 113818692 113818836 -29967619 + MIR SINE MIR 2 123 -139 933 265 15 8 chr12 113818836 113819096 -29967359 - MIR SINE MIR 0 262 1 762 266 11 73 chr12 113819096 113819226 -29967229 + MIR SINE MIR 123 259 -3 2154 117 32 35 chr12 113819335 113819711 -29966744 + THE1C LTR MaLR 1 375 0 426 265 146 27 chr12 113820062 113820247 -29966208 - MIR SINE MIR -13 249 43 580 250 16 109 chr12 113821000 113821248 -29965207 - MIR SINE MIR -10 252 28 599 294 12 32 chr12 113821893 113822075 -29964380 - MER112 DNA MER1_type -6 254 77 255 61 0 0 chr12 113822075 113822108 -29964347 + (TG)n Simple_repeat Simple_repeat 1 33 0 599 294 12 32 chr12 113822108 113822177 -29964278 - MER112 DNA MER1_type -183 77 8 2268 98 0 3 chr12 113822278 113822584 -29963871 - AluSx SINE Alu -7 305 1 5942 39 4 0 chr12 113823015 113823737 -29962718 - L1PA5 LINE L1 -1085 5061 4337 7425 39 15 0 chr12 113823746 113824817 -29961638 + L1PA5 LINE L1 5071 6154 0 253 260 21 73 chr12 113824994 113825090 -29961365 + L2 LINE L2 3139 3229 -43 1884 135 30 0 chr12 113825367 113825670 -29960785 - AluSx SINE Alu 0 312 1 474 290 6 40 chr12 113826910 113827025 -29959430 + MIR SINE MIR 93 201 -61 2285 144 24 65 chr12 113827025 113827316 -29959139 - MER65A LTR ERV1 0 445 179 369 0 0 0 chr12 113827316 113827357 -29959098 + (TG)n Simple_repeat Simple_repeat 2 42 0 2285 144 24 65 chr12 113827357 113827529 -29958926 - MER65A LTR ERV1 -266 179 1 474 290 6 40 chr12 113827529 113827589 -29958866 + MIR SINE MIR 201 262 0 586 241 135 50 chr12 113827603 113827971 -29958484 + L2 LINE L2 2693 3099 -214 1600 206 35 19 chr12 113827971 113828339 -29958116 - MLT1A2 LTR MaLR 0 374 1 586 241 135 50 chr12 113828339 113828408 -29958047 + L2 LINE L2 3099 3161 -152 872 201 75 9 chr12 113828411 113828629 -29957826 - L1MB7 LINE L1 0 6184 5952 320 224 0 0 chr12 113828672 113828739 -29957716 + L2 LINE L2 3230 3296 -17 560 142 21 28 chr12 113828780 113828921 -29957534 + GA-rich Low_complexity Low_complexity 3 142 0 966 214 37 53 chr12 113829433 113829756 -29956699 - Charlie4a DNA MER1_type -2 506 189 334 344 20 13 chr12 113830664 113830815 -29955640 - MIR SINE MIR -108 154 3 1719 161 8 105 chr12 113831022 113831096 -29955359 + MER7A DNA MER2_type 5 85 -2953 2125 132 10 6 chr12 113831096 113831407 -29955048 + AluJo SINE Alu 1 312 0 1719 161 8 105 chr12 113831407 113831705 -29954750 + MER7A DNA MER2_type 85 339 -7 482 182 0 0 chr12 113831926 113832014 -29954441 - MIR SINE MIR -108 154 67 1142 253 48 53 chr12 113832998 113833331 -29953124 + L2 LINE L2 2881 3213 -100 2212 113 0 3 chr12 113833331 113833624 -29952831 - AluSx SINE Alu -20 292 1 1142 253 48 53 chr12 113833624 113833725 -29952730 + L2 LINE L2 3213 3313 0 286 291 29 0 chr12 113833963 113834066 -29952389 + MIR SINE MIR 80 185 -77 694 240 60 5 chr12 113834345 113834545 -29951910 - MER113 DNA MER1_type? -307 214 4 195 129 0 0 chr12 113834796 113834827 -29951628 + (CTG)n Simple_repeat Simple_repeat 1 31 0 937 124 0 32 chr12 113834833 113835019 -29951436 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 1002 144 0 0 chr12 113835032 113835234 -29951221 + (ATG)n Simple_repeat Simple_repeat 1 382 0 1002 144 0 0 chr12 113835234 113835414 -29951041 + (ATG)n Simple_repeat Simple_repeat 1 180 0 291 146 0 0 chr12 113835489 113835544 -29950911 + (ATGGTG)n Simple_repeat Simple_repeat 2 56 0 472 237 30 8 chr12 113835559 113835690 -29950765 - MIR SINE MIR 0 262 129 362 259 224 6 chr12 113835699 113835873 -29950582 - MIR SINE MIR -49 213 2 228 304 13 13 chr12 113836029 113836108 -29950347 - L2 LINE L2 -189 3083 3005 878 273 95 36 chr12 113836460 113836987 -29949468 - L1ME4a LINE L1 0 6121 5564 477 273 103 16 chr12 113837054 113837154 -29949301 + MIR SINE MIR 20 110 -152 935 193 91 0 chr12 113837154 113837351 -29949104 - MER20 DNA MER1_type -4 215 1 477 273 103 16 chr12 113837351 113837444 -29949011 + MIR SINE MIR 110 230 -32 17069 185 38 13 chr12 113837655 113840105 -29946350 + L1MA5 LINE L1 252 2640 -4722 997 211 0 0 chr12 113840105 113840280 -29946175 + FAM SINE Alu 1 175 0 17069 185 38 13 chr12 113840280 113843584 -29942871 + L1MA5 LINE L1 2640 7362 0 420 287 69 6 chr12 113844319 113844493 -29941962 + MIR SINE MIR 72 256 -6 347 273 153 34 chr12 113845021 113845230 -29941225 + MIR SINE MIR 10 243 -19 215 294 322 0 chr12 113845761 113845904 -29940551 - MIR SINE MIR -24 238 50 779 251 15 20 chr12 113846131 113846330 -29940125 - MLT1A1 LTR MaLR -4 361 164 * 1804 126 4 26 chr12 113846325 113846595 -29939860 - MLT2B3 LTR ERVL -290 264 1 1575 143 50 57 chr12 113846754 113847054 -29939401 + AluJo SINE Alu 1 298 -14 276 204 0 0 chr12 113847054 113847103 -29939352 + MER117 DNA MER1_type 50 98 -99 2215 116 50 112 chr12 113847440 113847784 -29938671 - MLT2D LTR ERVL -1 413 100 1206 174 10 0 chr12 113847784 113847985 -29938470 + L1PA15 LINE L1 5963 6165 0 2215 116 50 112 chr12 113847985 113848079 -29938376 - MLT2D LTR ERVL -314 100 2 2403 81 0 7 chr12 113848080 113848378 -29938077 + AluSx SINE Alu 1 296 -16 476 239 224 15 chr12 113848405 113848631 -29937824 - MER113 DNA MER1_type? -3 518 228 2564 150 11 23 chr12 113848631 113849070 -29937385 - Tigger2a DNA MER2_type 0 434 1 476 239 224 15 chr12 113849070 113849106 -29937349 - MER113 DNA MER1_type? -293 228 201 2209 124 0 9 chr12 113849106 113849421 -29937034 + AluSx SINE Alu 1 312 0 471 301 7 7 chr12 113849467 113849610 -29936845 - L2 LINE L2 -221 3051 2909 546 228 243 5 chr12 113850852 113851054 -29935401 + MIR SINE MIR 13 262 0 1875 130 13 25 chr12 113851280 113851595 -29934860 - AluJb SINE Alu -1 311 1 400 285 89 42 chr12 113852087 113852301 -29934154 + L2 LINE L2 3090 3313 0 222 333 116 27 chr12 113852304 113852529 -29933926 + L2 LINE L2 2274 2518 -796 1933 113 0 4 chr12 113852669 113852925 -29933530 + AluSx SINE Alu 36 290 -22 28 0 0 0 chr12 113852925 113852953 -29933502 + AT_rich Low_complexity Low_complexity 1 28 0 2030 157 0 0 chr12 113852964 113853264 -29933191 + AluJb SINE Alu 1 300 -12 210 191 0 0 chr12 113853264 113853306 -29933149 + G-rich Low_complexity Low_complexity 2 43 0 242 326 140 26 chr12 113853734 113853927 -29932528 + MIR SINE MIR 22 230 -32 295 382 16 27 chr12 113856197 113856383 -29930072 - LTR67 LTR ERVL -110 447 264 301 272 103 44 chr12 113856428 113856564 -29929891 - LTR67 LTR ERVL -407 150 7 2333 121 0 6 chr12 113856621 113856935 -29929520 - AluSx SINE Alu 0 312 1 261 231 0 0 chr12 113857518 113857570 -29928885 - MER112 DNA MER1_type -6 254 203 1038 228 38 0 chr12 113857578 113857789 -29928666 + MER58A DNA MER1_type 5 223 -1 2401 87 3 0 chr12 113857805 113858104 -29928351 - AluSq SINE Alu -13 300 1 332 295 47 7 chr12 113858384 113858533 -29927922 - L1ME4a LINE L1 -13 6108 5954 190 374 43 0 chr12 113858635 113858750 -29927705 - MIR3 SINE MIR -3 205 86 221 294 44 59 chr12 113858781 113858917 -29927538 + L2 LINE L2 2924 3057 -215 238 167 0 21 chr12 113858934 113858982 -29927473 + L2 LINE L2 3262 3308 -5 270 275 70 42 chr12 113859104 113859246 -29927209 + MIR SINE MIR 117 262 0 664 218 6 46 chr12 113859295 113859469 -29926986 - MIR SINE MIR -14 248 82 1925 141 0 4 chr12 113859709 113859985 -29926470 + AluSx SINE Alu 1 275 -37 398 270 71 8 chr12 113860113 113860239 -29926216 - MIR SINE MIR -10 252 119 371 129 57 0 chr12 113860307 113860377 -29926078 - L1MA5 LINE L1 0 6300 6227 803 216 11 21 chr12 113860412 113860602 -29925853 + MIR SINE MIR 30 217 -45 566 197 184 0 chr12 113860685 113860837 -29925618 - MER5A DNA MER1_type 0 189 10 823 209 99 5 chr12 113861670 113861861 -29924594 - MER3 DNA MER1_type 0 209 1 619 285 47 30 chr12 113862065 113862148 -29924307 - MIR SINE MIR -22 240 160 2380 85 3 3 chr12 113862148 113862442 -29924013 - AluSp SINE Alu -13 300 7 619 285 47 30 chr12 113862442 113862593 -29923862 - MIR SINE MIR -102 160 2 2227 113 0 3 chr12 113862781 113863074 -29923381 + AluSx SINE Alu 1 292 -20 2006 170 17 14 chr12 113863158 113863505 -29922950 - MER7A DNA MER2_type 0 346 1 922 236 37 21 chr12 113863699 113863940 -29922515 - MIR SINE MIR -10 252 8 504 283 49 41 chr12 113864749 113864993 -29921462 - MIR SINE MIR -3 259 14 254 315 62 37 chr12 113864980 113865142 -29921313 + L2 LINE L2 3078 3243 -29 * 787 273 93 19 chr12 113865906 113866272 -29920183 - L1ME4a LINE L1 0 6121 5729 1363 282 56 13 chr12 113868207 113868690 -29917765 - L2 LINE L2 -67 3246 2750 499 291 45 0 chr12 113869368 113869547 -29916908 - L2 LINE L2 0 3313 3127 423 0 0 0 chr12 113870143 113870190 -29916265 + (TG)n Simple_repeat Simple_repeat 2 48 0 318 325 183 4 chr12 113870218 113870492 -29915963 - L3 LINE CR1 -11 1566 1244 224 250 50 86 chr12 113870544 113870684 -29915771 - MIR SINE MIR -117 145 11 239 245 0 71 chr12 113872203 113872301 -29914154 + T-rich Low_complexity Low_complexity 2 92 0 336 24 0 0 chr12 113872701 113872742 -29913713 + (CA)n Simple_repeat Simple_repeat 2 42 0 183 233 0 0 chr12 113872816 113872859 -29913596 - MER5B DNA MER1_type -13 165 123 1671 161 0 22 chr12 113872900 113873173 -29913282 + AluJo SINE Alu 18 284 -28 256 218 18 0 chr12 113873339 113873394 -29913061 - MIR3 SINE MIR -34 174 119 1573 167 0 0 chr12 113873396 113873639 -29912816 + MER7A DNA MER2_type 1 241 -105 2290 122 33 3 chr12 113873639 113873968 -29912487 + MER1B DNA MER1_type 1 339 0 447 176 0 197 chr12 113873968 113874108 -29912347 + MER7A DNA MER2_type 225 336 -1 304 329 13 53 chr12 113874157 113874309 -29912146 + MIR SINE MIR 6 151 -111 888 198 96 5 chr12 113874538 113874725 -29911730 - MER3 DNA MER1_type 0 209 6 224 236 28 42 chr12 113874866 113874938 -29911517 - MIR SINE MIR -76 132 62 1806 234 63 15 chr12 113875767 113876241 -29910214 - MLT1J LTR MaLR -14 497 1 2144 125 3 3 chr12 113876264 113876567 -29909888 - AluSx SINE Alu -9 303 1 229 232 30 77 chr12 113876804 113876972 -29909483 + L2 LINE L2 2804 2963 -309 716 270 95 5 chr12 113876976 113877198 -29909257 + MIR SINE MIR 5 246 -16 * 806 249 120 13 chr12 113877194 113877419 -29909036 - MIR SINE MIR 0 262 14 1262 204 142 70 chr12 113878032 113878503 -29907952 + MLT1D LTR MaLR 1 505 0 199 358 0 0 chr12 113878520 113878587 -29907868 + MER5A DNA MER1_type 120 186 -3 358 82 0 0 chr12 113879377 113879426 -29907029 - MLT2C1 LTR ERVL 0 397 349 792 100 0 0 chr12 113879451 113879571 -29906884 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 307 130 0 0 chr12 113879618 113879664 -29906791 + MLT2C2 LTR ERVL 417 462 -2 * 1988 177 32 5 chr12 113879664 113880030 -29906425 - MLT2D LTR ERVL -38 482 1 189 186 70 0 chr12 113880142 113880185 -29906270 + MIR SINE MIR 162 207 -55 296 188 16 0 chr12 113880232 113880296 -29906159 + LTR67 LTR ERVL 114 178 -379 441 208 131 115 chr12 113880419 113880493 -29905962 + MER5A DNA MER1_type 4 75 -114 2002 122 61 3 chr12 113880493 113880788 -29905667 + AluSx SINE Alu 1 312 0 441 208 131 115 chr12 113880788 113880896 -29905559 + MER5A DNA MER1_type 75 189 0 912 248 51 31 chr12 113881401 113881490 -29904965 - MIR SINE MIR 0 262 176 2013 187 122 26 chr12 113881490 113881949 -29904506 - MLT1D LTR MaLR -2 503 1 912 248 51 31 chr12 113881949 113882113 -29904342 - MIR SINE MIR -86 176 4 2157 154 31 11 chr12 113882333 113882715 -29903740 - MLT1B LTR MaLR 0 390 1 985 201 10 20 chr12 113883101 113883300 -29903155 + MER58A DNA MER1_type 28 224 0 371 294 34 34 chr12 113883304 113883450 -29903005 - MIR3 SINE MIR -43 165 20 513 308 8 15 chr12 113883797 113883965 -29902490 + MER5A DNA MER1_type 11 188 -1 339 85 0 0 chr12 113884420 113884467 -29901988 + (T)n Simple_repeat Simple_repeat 1 47 0 469 241 9 9 chr12 113884962 113885078 -29901377 - L2 LINE L2 -12 3301 3186 384 345 43 24 chr12 113885385 113885594 -29900861 + MIR SINE MIR 2 214 -48 220 311 123 19 chr12 113885926 113886032 -29900423 + MER5A DNA MER1_type 7 123 -66 902 205 29 12 chr12 113886068 113886239 -29900216 + MER5A DNA MER1_type 1 174 -15 642 250 12 25 chr12 113886228 113886388 -29900067 + MER5B DNA MER1_type 21 178 0 * 260 227 13 40 chr12 113886933 113887008 -29899447 - MIR SINE MIR -50 158 85 25 0 0 0 chr12 113887360 113887385 -29899070 + GC_rich Low_complexity Low_complexity 1 25 0 947 284 39 12 chr12 113888266 113888520 -29897935 - MIR SINE MIR -1 261 1 273 299 86 8 chr12 113888619 113888736 -29897719 - MIR SINE MIR -12 250 125 697 318 27 27 chr12 113889040 113889298 -29897157 + MIR SINE MIR 5 262 0 427 257 3 31 chr12 113889440 113889591 -29896864 - MIR SINE MIR -62 146 6 487 239 32 0 chr12 113890354 113890483 -29895972 - MIR SINE MIR -63 145 45 194 286 117 13 chr12 113890761 113890838 -29895617 + MIR3 SINE MIR 15 99 -109 275 213 93 46 chr12 113891507 113891615 -29894840 + MIR SINE MIR 58 170 -92 229 200 0 55 chr12 113892792 113892847 -29893608 - L2 LINE L2 -7 3265 3214 372 285 107 89 chr12 113892926 113893548 -29892907 - L2 LINE L2 -205 3067 2451 711 136 185 0 chr12 113893561 113893723 -29892732 + L1MB3 LINE L1 5989 6180 -3 1898 181 67 25 chr12 113893909 113894356 -29892099 - MLT1C LTR MaLR -1 466 1 2261 114 0 0 chr12 113894573 113894871 -29891584 - AluSx SINE Alu -12 300 3 1171 223 12 8 chr12 113894992 113895248 -29891207 + MIR SINE MIR 3 259 -3 314 106 0 0 chr12 113895847 113895894 -29890561 + L2 LINE L2 3266 3312 -1 2362 97 0 13 chr12 113895966 113896266 -29890189 - AluSx SINE Alu -16 296 1 232 332 98 13 chr12 113896311 113896671 -29889784 - L2 LINE L2 -1015 2299 1842 225 200 0 0 chr12 113897223 113897258 -29889197 + MIR3 SINE MIR 153 187 -21 2194 123 136 21 chr12 113897305 113897688 -29888767 - MSTA LTR MaLR -1 427 1 426 338 66 9 chr12 113897798 113898011 -29888444 - MIR SINE MIR -17 245 21 495 302 142 19 chr12 113898214 113898734 -29887721 + L1ME3A LINE L1 5365 5948 -222 906 191 121 10 chr12 113899197 113899396 -29887059 + MER58A DNA MER1_type 1 221 -3 188 323 42 31 chr12 113899543 113899639 -29886816 + L2 LINE L2 3168 3264 -8 1293 246 143 24 chr12 113899668 113900123 -29886332 - MLT1J LTR MaLR 0 511 3 1000 142 99 62 chr12 113900923 113901134 -29885321 - MER20 DNA MER1_type 0 219 1 260 291 94 34 chr12 113901216 113901333 -29885122 + MIR3 SINE MIR 85 208 0 695 259 39 17 chr12 113901690 113901883 -29884572 + MIR SINE MIR 3 206 -56 195 162 0 0 chr12 113901887 113901924 -29884531 + (TA)n Simple_repeat Simple_repeat 2 38 0 328 217 43 61 chr12 113901933 113902048 -29884407 - L1MCa LINE L1 -4335 2091 1979 2157 134 3 6 chr12 113902384 113902697 -29883758 + AluSx SINE Alu 1 312 0 245 246 0 18 chr12 113902792 113902849 -29883606 + CT-rich Low_complexity Low_complexity 4 59 0 1525 201 130 11 chr12 113903336 113903690 -29882765 - MSTD LTR MaLR 0 396 1 376 237 85 40 chr12 113903711 113903888 -29882567 - MLT1J LTR MaLR 0 511 327 841 178 168 0 chr12 113903896 113904081 -29882374 + MER58A DNA MER1_type 1 216 -8 616 259 23 76 chr12 113904125 113904201 -29882254 - MLT1J LTR MaLR -239 272 194 940 256 10 5 chr12 113904201 113904408 -29882047 + MER63A DNA MER1_type 3 210 0 616 259 23 76 chr12 113904408 113904594 -29881861 - MLT1J LTR MaLR -317 194 24 616 304 33 5 chr12 113904766 113904950 -29881505 - MIR3 SINE MIR -5 203 15 357 298 10 0 chr12 113905010 113905114 -29881341 - MER117 DNA MER1_type -92 105 1 433 298 18 42 chr12 113905319 113905487 -29880968 - MIR SINE MIR -56 206 43 302 311 66 0 chr12 113905727 113905833 -29880622 + L2 LINE L2 3201 3313 0 215 308 211 0 chr12 113905902 113906006 -29880449 + L2 LINE L2 3139 3264 -8 464 250 87 41 chr12 113906064 113906260 -29880195 + MIR SINE MIR 22 226 -36 * 664 278 90 14 chr12 113906243 113906455 -29880000 + MIR SINE MIR 35 262 0 558 312 48 22 chr12 113907105 113907333 -29879122 - MIR SINE MIR -12 250 18 243 364 70 8 chr12 113907371 113907500 -29878955 + MIR SINE MIR 117 253 -9 1091 219 32 8 chr12 113907658 113907904 -29878551 + MIR SINE MIR 9 260 -2 373 242 105 24 chr12 113907912 113908036 -29878419 - MIR SINE MIR -101 161 28 741 272 72 17 chr12 113908507 113908742 -29877713 - MIR SINE MIR -8 254 7 3668 124 31 45 chr12 113909507 113909940 -29876515 + L1MA8 LINE L1 4873 5310 -981 2557 59 0 0 chr12 113909940 113910230 -29876225 + AluY SINE Alu 1 290 -21 3668 124 31 45 chr12 113910230 113910252 -29876203 + L1MA8 LINE L1 5310 5331 -960 1657 143 8 0 chr12 113910252 113910490 -29875965 + AluSx SINE Alu 34 273 -39 3668 124 31 45 chr12 113910490 113911094 -29875361 + L1MA8 LINE L1 5331 5920 -371 544 135 143 32 chr12 113911088 113911214 -29875241 + L1MA8 LINE L1 6146 6285 -6 * 1308 277 136 41 chr12 113911280 113912174 -29874281 - L2 LINE L2 -36 3236 2245 550 227 171 15 chr12 113912171 113912372 -29874083 + MIR SINE MIR 21 256 -6 * 286 301 129 0 chr12 113912505 113912598 -29873857 + L2 LINE L2 3155 3259 -13 281 235 43 70 chr12 113912759 113912874 -29873581 - L3 LINE CR1 -136 1441 1330 514 109 0 14 chr12 113913186 113913310 -29873145 - MER53 DNA DNA -6 183 1 1831 149 24 28 chr12 113914640 113915066 -29871389 + AluJo SINE Alu 1 425 0 431 348 66 17 chr12 113915171 113915352 -29871103 + L2 LINE L2 3072 3261 -11 222 279 59 66 chr12 113915605 113915741 -29870714 - L2 LINE L2 -18 3295 3161 852 256 57 5 chr12 113915799 113916010 -29870445 + MIR SINE MIR 40 261 -1 253 200 0 0 chr12 113917268 113917313 -29869142 - FAM SINE Alu -8 171 127 1509 156 0 0 chr12 113917313 113917531 -29868924 - AluJo SINE Alu -92 220 3 401 258 120 25 chr12 113917535 113917818 -29868637 - L1ME4a LINE L1 -286 5835 5526 355 311 194 26 chr12 113917844 113918226 -29868229 - L1ME4a LINE L1 -813 5333 4888 393 275 62 62 chr12 113919511 113919671 -29866784 + MIR SINE MIR 23 182 -80 278 280 30 45 chr12 113921634 113921752 -29864703 - MER5B DNA MER1_type -23 166 41 202 209 0 23 chr12 113922665 113922708 -29863747 + L3 LINE CR1 1534 1575 -2 521 242 172 19 chr12 113922795 113922952 -29863503 - MER5A DNA MER1_type 0 189 9 340 156 109 0 chr12 113923530 113923594 -29862861 + MER5A DNA MER1_type 56 126 -63 287 222 12 0 chr12 113924484 113924565 -29861890 + (CA)n Simple_repeat Simple_repeat 1 82 0 432 283 58 42 chr12 113924700 113924880 -29861575 - MER5A DNA MER1_type -8 170 1 205 284 80 34 chr12 113925579 113925667 -29860788 + MIR SINE MIR 59 150 -58 233 255 0 0 chr12 113925979 113926030 -29860425 + C-rich Low_complexity Low_complexity 2 52 0 606 286 36 5 chr12 113927626 113927846 -29858609 - L1ME3A LINE L1 -5 6165 5939 1111 121 0 7 chr12 113928011 113928160 -29858295 + AluJb SINE Alu 1 148 -164 1993 148 28 0 chr12 113928535 113928826 -29857629 - AluSx SINE Alu -13 299 1 2377 105 0 3 chr12 113929105 113929411 -29857044 - AluSc SINE Alu -4 305 1 2350 123 0 0 chr12 113929411 113929719 -29856736 - AluSx SINE Alu -4 308 1 714 336 109 12 chr12 113929759 113930170 -29856285 - L2 LINE L2 -10 3303 2853 5435 141 28 17 chr12 113930318 113931364 -29855091 - L1MD1 LINE L1 -8 6234 5181 3994 197 144 11 chr12 113931343 113932362 -29854093 - L1MDa LINE L1 -5385 1155 1 * 2175 97 0 11 chr12 113932396 113932674 -29853781 - AluY SINE Alu -10 301 27 633 155 0 0 chr12 113932955 113933058 -29853397 + FLAM_C SINE Alu 38 140 -3 307 267 317 17 chr12 113933417 113933597 -29852858 - MIR SINE MIR -28 234 1 213 333 33 0 chr12 113933749 113933809 -29852646 - L3b LINE CR1 -7 1576 1515 255 241 108 0 chr12 113933929 113934012 -29852443 + MER113 DNA MER1_type? 123 214 -307 2121 119 0 7 chr12 113934210 113934495 -29851960 - AluSq SINE Alu -30 283 1 284 197 99 0 chr12 113934723 113934794 -29851661 - MER116 DNA Mariner -2 78 1 593 300 56 0 chr12 113934806 113934986 -29851469 - MIR SINE MIR -61 201 12 1867 160 0 20 chr12 113935187 113935487 -29850968 + AluJo SINE Alu 1 294 -18 278 105 0 0 chr12 113936298 113936336 -29850119 + L2 LINE L2 3262 3299 -14 231 36 0 0 chr12 113936338 113936366 -29850089 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 914 187 96 53 chr12 113936576 113936785 -29849670 - AluJo SINE Alu -92 220 3 3287 168 30 31 chr12 113936785 113936994 -29849461 - L1MC3 LINE L1 -1 7784 7576 3550 131 9 14 chr12 113936994 113937576 -29848879 - L1PA16 LINE L1 -2 6164 5586 3287 168 30 31 chr12 113937576 113938039 -29848416 - L1MC3 LINE L1 -209 7576 7113 2333 180 38 84 chr12 113938616 113939151 -29847304 - MLT1E2 LTR MaLR 0 626 125 1600 170 139 9 chr12 113939151 113939474 -29846981 + MLT1A1 LTR MaLR 1 365 0 2333 180 38 84 chr12 113939474 113939594 -29846861 - MLT1E2 LTR MaLR -501 125 1 492 245 199 0 chr12 113939594 113939745 -29846710 - MER5A DNA MER1_type 0 189 9 972 192 57 0 chr12 113939829 113940006 -29846449 - MER5A DNA MER1_type -2 187 1 267 54 0 0 chr12 113941915 113941952 -29844503 + (CA)n Simple_repeat Simple_repeat 1 37 0 486 113 0 0 chr12 113943044 113943106 -29843349 + AluS SINE Alu 2 63 -248 248 276 23 11 chr12 113943136 113943223 -29843232 - MIR SINE MIR -1 261 174 1696 118 0 17 chr12 113943226 113943463 -29842992 + AluSg/x SINE Alu 66 298 -14 278 186 9 177 chr12 113943720 113943833 -29842622 - MER102a DNA MER1_type 0 330 237 432 0 0 0 chr12 113943839 113943887 -29842568 + (TG)n Simple_repeat Simple_repeat 1 48 0 613 234 161 46 chr12 113944718 113944936 -29841519 - MIR SINE MIR -1 261 19 614 319 70 31 chr12 113945080 113945618 -29840837 - L2 LINE L2 -213 3059 2498 375 306 67 30 chr12 113945715 113945849 -29840606 + MIR SINE MIR 12 150 -112 453 262 97 14 chr12 113946626 113946771 -29839684 - MER91A DNA MER1_type -39 157 1 975 94 44 0 chr12 113947343 113947503 -29838952 + L1MD3 LINE L1 7829 7995 0 394 274 0 38 chr12 113947654 113947760 -29838695 - L2 LINE L2 -10 3303 3202 615 264 72 78 chr12 113948385 113948733 -29837722 - L2 LINE L2 0 3272 2927 2005 112 10 34 chr12 113949184 113949479 -29836976 + AluJb SINE Alu 19 306 -6 1752 178 0 38 chr12 113949798 113950113 -29836342 - AluJb SINE Alu -2 310 8 531 264 16 8 chr12 113950119 113950244 -29836211 - MIR SINE MIR -112 150 25 851 168 22 50 chr12 113950337 113950516 -29835939 + MER5B DNA MER1_type 1 174 -4 334 191 22 70 chr12 113950536 113950659 -29835796 - MER5A DNA MER1_type -6 183 88 1635 134 128 26 chr12 113950669 113951012 -29835443 - L1PA15 LINE L1 -9 6156 5779 2321 68 34 10 chr12 113951025 113951319 -29835136 - AluSq SINE Alu -12 301 1 341 183 56 0 chr12 113951320 113951391 -29835064 - MER5A DNA MER1_type -114 75 1 465 293 66 18 chr12 113951402 113951569 -29834886 - MIR SINE MIR -70 192 18 230 162 0 0 chr12 113951750 113951787 -29834668 + L2 LINE L2 3263 3299 -14 2101 156 0 3 chr12 113953099 113953406 -29833049 + AluJb SINE Alu 1 306 -6 1028 198 0 0 chr12 113953407 113953579 -29832876 + AluJo/FRAM SINE Alu 133 304 -8 816 278 57 4 chr12 113953737 113953982 -29832473 - MIR SINE MIR -3 259 2 2052 117 3 3 chr12 113954151 113954433 -29832022 + AluSx SINE Alu 1 282 -30 306 0 0 0 chr12 113954433 113954467 -29831988 + (CA)n Simple_repeat Simple_repeat 1 34 0 421 310 129 54 chr12 113954778 113955165 -29831290 + L3 LINE CR1 1084 1499 -78 943 199 102 5 chr12 113956175 113956391 -29830064 + MIR SINE MIR 10 246 -16 1864 116 72 0 chr12 113956588 113956864 -29829591 - AluY SINE Alu -15 296 1 549 89 0 0 chr12 113956864 113956943 -29829512 + HY3 scRNA scRNA 22 100 -1 186 43 0 0 chr12 113956943 113956966 -29829489 + (TAAAAA)n Simple_repeat Simple_repeat 5 27 0 515 292 109 35 chr12 113957131 113957388 -29829067 - L2 LINE L2 -2 3270 2995 351 242 74 11 chr12 113958110 113958205 -29828250 - MER5A DNA MER1_type -77 112 12 742 220 64 6 chr12 113958209 113958382 -29828073 + MER5A DNA MER1_type 5 187 -2 703 259 24 12 chr12 113958390 113958560 -29827895 + MER5B DNA MER1_type 2 173 -5 260 265 59 44 chr12 113958608 113958744 -29827711 + MER5B DNA MER1_type 9 146 -32 210 386 11 0 chr12 113958777 113958865 -29827590 - MIR3 SINE MIR -39 169 81 1071 134 20 0 chr12 113958950 113959128 -29827327 - AluSp SINE Alu 0 314 134 2437 90 0 3 chr12 113959287 113959599 -29826856 + AluY SINE Alu 1 311 0 721 236 40 6 chr12 113959639 113959813 -29826642 - MIR SINE MIR -9 253 74 3235 131 14 10 chr12 113959825 113960337 -29826118 - L1MB3 LINE L1 -8 6175 5662 2166 132 23 0 chr12 113960348 113960651 -29825804 - AluSx SINE Alu -2 310 1 240 156 0 22 chr12 113960651 113960696 -29825759 - L1MB3 LINE L1 -507 5676 5633 199 275 29 43 chr12 113960697 113960766 -29825689 - MIR SINE MIR -194 68 1 405 0 0 0 chr12 113960868 113960913 -29825542 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr12 113961307 113961328 -29825127 + AT_rich Low_complexity Low_complexity 1 21 0 1939 134 7 42 chr12 113962058 113962365 -29824090 + AluJb SINE Alu 1 296 -16 916 188 97 19 chr12 113962406 113962613 -29823842 - MER58A DNA MER1_type 0 224 2 202 288 0 51 chr12 113962613 113962665 -29823790 + MIR SINE MIR 38 88 -120 189 246 35 0 chr12 113962842 113962899 -29823556 + MIR3 SINE MIR 112 170 -38 1059 147 0 83 chr12 113962916 113963120 -29823335 + AluSg/x SINE Alu 119 305 -5 321 250 0 0 chr12 113963291 113963359 -29823096 - MIR3 SINE MIR -51 157 90 259 218 0 18 chr12 113963360 113963415 -29823040 - MLT1H LTR MaLR -429 120 67 227 256 239 8 chr12 113966912 113967029 -29819426 + L3 LINE CR1 1431 1574 -3 337 180 36 139 chr12 113967428 113967577 -29818878 + MIR SINE MIR 22 148 -114 2326 109 0 3 chr12 113967577 113967888 -29818567 + AluSx SINE Alu 1 310 -2 337 180 36 139 chr12 113967888 113967932 -29818523 + MIR SINE MIR 148 195 -67 212 290 81 0 chr12 113968164 113968226 -29818229 + L2 LINE L2 3201 3267 -5 207 242 48 3 chr12 113969126 113969200 -29817255 + MIR SINE MIR 58 135 -73 1089 182 83 57 chr12 113969510 113969882 -29816573 - L1MD2 LINE L1 -12 6230 5881 1381 197 42 4 chr12 113969882 113970052 -29816403 - AluJb SINE Alu 0 302 116 207 0 0 0 chr12 113970052 113970075 -29816380 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1381 197 42 4 chr12 113970075 113970188 -29816267 - AluJb SINE Alu -186 116 9 769 161 0 0 chr12 113970210 113970322 -29816133 - FLAM_C SINE Alu -17 126 15 405 261 4 10 chr12 113970334 113970454 -29816001 - L1MD2 LINE L1 -287 5891 5772 1190 163 30 5 chr12 113970462 113970664 -29815791 - AluJb SINE Alu -30 282 76 443 158 0 24 chr12 113970738 113970841 -29815614 - MER5A DNA MER1_type -86 103 4 1434 67 5 0 chr12 113971033 113971226 -29815229 + L1PA8 LINE L1 5896 6089 -83 1541 76 0 0 chr12 113971226 113971421 -29815034 + L1PA5 LINE L1 5956 6153 -1 487 346 16 16 chr12 113972161 113972343 -29814112 + L3 LINE CR1 904 1085 -492 320 278 102 0 chr12 113972349 113972457 -29813998 - LTR67 LTR ERVL 0 557 439 283 215 13 63 chr12 113972534 113972613 -29813842 + L3 LINE CR1 1180 1254 -323 456 269 81 0 chr12 113972850 113973010 -29813445 - LTR67 LTR ERVL -381 176 4 675 298 116 45 chr12 113973017 113973088 -29813367 + L3 LINE CR1 1098 1163 -414 2090 112 19 57 chr12 113973088 113973402 -29813053 + AluSx SINE Alu 1 302 -10 675 298 116 45 chr12 113973402 113973511 -29812944 + L3 LINE CR1 1163 1263 -314 1623 215 3 10 chr12 113973511 113973818 -29812637 + AluJb SINE Alu 1 305 -7 675 298 116 45 chr12 113973818 113974076 -29812379 + L3 LINE CR1 1263 1568 -9 370 248 186 19 chr12 113975163 113975324 -29811131 - MIR SINE MIR -55 207 20 1449 170 101 4 chr12 113975418 113975695 -29810760 + AluJo SINE Alu 1 304 -8 801 182 8 0 chr12 113975703 113975835 -29810620 + FLAM_A SINE Alu 1 133 0 254 259 43 52 chr12 113977565 113977681 -29808774 + MIR SINE MIR 22 136 -126 393 242 222 7 chr12 113977723 113977876 -29808579 + MER5A DNA MER1_type 4 189 0 2000 130 16 36 chr12 113977971 113978279 -29808176 + AluJb SINE Alu 1 302 -10 1933 161 55 6 chr12 113978806 113979154 -29807301 + MLT1A1 LTR MaLR 1 365 0 820 202 64 0 chr12 113979609 113979782 -29806673 + MER20 DNA MER1_type 36 219 0 833 132 7 37 chr12 113980138 113980274 -29806181 + AluSq/x SINE Alu 1 132 -180 26 50 0 0 chr12 113980289 113980329 -29806126 + AT_rich Low_complexity Low_complexity 1 40 0 2123 103 0 0 chr12 113980770 113981065 -29805390 - AluSx SINE Alu 0 307 13 454 252 7 70 chr12 113981100 113981243 -29805212 - MIR SINE MIR -116 146 13 249 258 75 21 chr12 113981326 113981419 -29805036 + MIR SINE MIR 13 110 -152 291 294 11 11 chr12 113981515 113981607 -29804848 - MIR3 SINE MIR -49 159 68 1948 148 10 3 chr12 113981846 113982151 -29804304 + AluJb SINE Alu 1 307 -5 2443 76 7 0 chr12 113982152 113982455 -29804000 + AluSp SINE Alu 1 305 -8 186 128 85 43 chr12 113982593 113982640 -29803815 - L2 LINE L2 0 3313 3265 2063 131 31 56 chr12 113983067 113983425 -29803030 - THE1B LTR MaLR -15 349 1 364 253 0 0 chr12 113983663 113983746 -29802709 + MLT1K LTR MaLR 1 83 -472 205 265 119 62 chr12 113983751 113984011 -29802444 + L2 LINE L2 2573 2847 -467 994 298 145 19 chr12 113984549 113985025 -29801430 + MLT1K LTR MaLR 46 581 -7 2191 113 17 13 chr12 113985162 113985462 -29800993 - AluSx SINE Alu -11 301 1 456 267 33 0 chr12 113985502 113985622 -29800833 - L2 LINE L2 0 3272 3149 233 245 128 29 chr12 113986250 113986352 -29800103 - L2 LINE L2 0 3313 3202 247 128 0 0 chr12 113986581 113986620 -29799835 + L1MB3 LINE L1 6099 6137 -46 426 140 0 0 chr12 113986620 113986677 -29799778 + FRAM SINE Alu 75 131 -45 3293 120 37 78 chr12 113986679 113987232 -29799223 + LTR36 LTR ERV1 1 527 -84 2291 115 0 0 chr12 113987232 113987536 -29798919 - AluSx SINE Alu -8 304 1 3293 120 37 78 chr12 113987536 113987607 -29798848 + LTR36 LTR ERV1 527 599 -12 1780 141 18 25 chr12 113987617 113987766 -29798689 - AluJb SINE Alu 0 312 164 6223 145 101 19 chr12 113987766 113988947 -29797508 - MER52C LTR ERV1 0 1278 1 1780 141 18 25 chr12 113988947 113989081 -29797374 - AluJb SINE Alu -148 164 31 275 91 0 0 chr12 113989149 113989193 -29797262 + L1MB4 LINE L1 6136 6179 -1 1509 199 85 111 chr12 113989215 113989502 -29796953 - MLT1G LTR MaLR -38 552 332 2143 105 28 95 chr12 113989502 113989676 -29796779 + THE1B LTR MaLR 1 136 -228 2217 131 0 0 chr12 113989676 113989982 -29796473 - AluSg SINE Alu -4 306 1 2143 105 28 95 chr12 113989982 113990197 -29796258 + THE1B LTR MaLR 136 364 0 1509 199 85 111 chr12 113990197 113990521 -29795934 - MLT1G LTR MaLR -258 332 1 353 229 235 18 chr12 113991161 113991331 -29795124 + MIR SINE MIR 35 241 -21 201 232 10 71 chr12 113992462 113992561 -29793894 - L2 LINE L2 -633 2681 2589 281 233 41 0 chr12 113992664 113992737 -29793718 - L2 LINE L2 -22 3291 3216 2739 32 0 13 chr12 113992737 113993051 -29793404 + AluY SINE Alu 2 311 0 582 239 52 32 chr12 113993432 113993587 -29792868 - MER5B DNA MER1_type -19 159 2 607 204 0 0 chr12 113993671 113993779 -29792676 + FRAM SINE Alu 1 108 -68 2554 71 3 0 chr12 113993801 113994112 -29792343 + AluSx SINE Alu 1 312 0 869 146 206 2 chr12 113995208 113995471 -29790984 + MER44D DNA MER2_type 1 605 0 2364 88 0 3 chr12 113995514 113995809 -29790646 + AluSx SINE Alu 1 294 -18 857 150 56 25 chr12 113996286 113996446 -29790009 + FRAM SINE Alu 1 164 -12 1745 135 4 0 chr12 113996517 113996769 -29789686 - AluSg SINE Alu -14 296 44 218 272 58 29 chr12 113997432 113997535 -29788920 - L2 LINE L2 -545 2769 2664 364 246 108 15 chr12 113998336 113998466 -29787989 - MER103 DNA DNA -23 143 2 736 139 29 44 chr12 113999391 113999528 -29786927 - FLAM_C SINE Alu -7 136 2 812 166 31 43 chr12 113999636 113999799 -29786656 + FRAM SINE Alu 1 161 -5 2346 73 0 36 chr12 114001026 114001329 -29785126 + AluY SINE Alu 2 293 -18 22 56 0 0 chr12 114001499 114001535 -29784920 + AT_rich Low_complexity Low_complexity 1 36 0 2426 99 0 0 chr12 114002081 114002384 -29784071 - AluSx SINE Alu -9 303 1 226 184 293 61 chr12 114003270 114003417 -29783038 + MER5A DNA MER1_type 9 189 0 2198 103 20 0 chr12 114004132 114004424 -29782031 + AluSx SINE Alu 1 298 -14 903 200 0 12 chr12 114004431 114004591 -29781864 + AluJb SINE Alu 137 294 -18 1762 164 3 38 chr12 114004625 114004942 -29781513 - AluJo SINE Alu -6 306 1 1929 138 11 0 chr12 114005032 114005331 -29781124 + AluSg SINE Alu 1 302 0 4479 128 57 42 chr12 114005847 114005892 -29780563 - L1MB3 LINE L1 0 6183 6140 2618 125 0 11 chr12 114005892 114006260 -29780195 - THE1B LTR MaLR 0 364 1 4479 128 57 42 chr12 114006260 114006955 -29779500 - L1MB3 LINE L1 -43 6140 5427 616 194 24 24 chr12 114006955 114007079 -29779376 - FLAM_A SINE Alu -9 124 1 4479 128 57 42 chr12 114007079 114007186 -29779269 - L1MB3 LINE L1 -756 5427 5323 993 161 0 7 chr12 114007187 114007342 -29779113 - AluJb SINE Alu -22 290 137 3023 183 34 93 chr12 114007405 114007729 -29778726 - L1MB3 LINE L1 -901 5245 4903 2075 137 3 0 chr12 114007729 114008028 -29778427 - AluSx SINE Alu -12 300 1 3023 183 34 93 chr12 114008028 114008335 -29778120 - L1MB3 LINE L1 -1243 4903 4686 2103 122 10 3 chr12 114008335 114008629 -29777826 - AluSx SINE Alu -16 296 1 3023 183 34 93 chr12 114008629 114008937 -29777518 - L1MB3 LINE L1 -1460 4686 4361 258 228 109 0 chr12 114009275 114009367 -29777088 - MIR SINE MIR -54 208 107 329 260 0 0 chr12 114010116 114010189 -29776266 - MLT1H LTR MaLR -456 93 21 14780 34 5 5 chr12 114011502 114014062 -29772393 - L1PA5 LINE L1 -1 6153 3620 21 0 0 0 chr12 114015640 114015661 -29770794 + AT_rich Low_complexity Low_complexity 1 21 0 277 208 0 0 chr12 114015811 114015864 -29770591 - L2 LINE L2 -4 3268 3216 22 0 0 0 chr12 114015919 114015941 -29770514 + AT_rich Low_complexity Low_complexity 1 22 0 654 198 0 0 chr12 114016700 114016811 -29769644 - FLAM_A SINE Alu -26 116 6 249 186 0 0 chr12 114016869 114016912 -29769543 + U2 snRNA snRNA 1 43 -145 3297 107 6 19 chr12 114017048 114017525 -29768930 - MER9 LTR ERVK -1 510 40 244 269 77 0 chr12 114018920 114018998 -29767457 - L2 LINE L2 0 3272 3189 2180 110 0 3 chr12 114020150 114020440 -29766015 + AluSq SINE Alu 1 289 -24 2202 108 16 0 chr12 114020686 114020992 -29765463 - AluSx SINE Alu -1 311 1 232 279 132 25 chr12 114021783 114021987 -29764468 + L1MEd LINE L1 1046 1271 -4934 2050 214 64 11 chr12 114021988 114022520 -29763935 + L1MB8 LINE L1 5595 6154 -24 1547 186 28 45 chr12 114022545 114022835 -29763620 + AluJb SINE Alu 1 285 -27 316 293 86 35 chr12 114022958 114023156 -29763299 + L1MEd LINE L1 1869 2076 -4320 2063 132 4 0 chr12 114023319 114023600 -29762855 + AluSx SINE Alu 1 282 -30 653 249 107 11 chr12 114023612 114023966 -29762489 + L1MEd LINE L1 3142 3529 -2686 297 312 32 40 chr12 114025074 114025199 -29761256 - LTR67 LTR ERVL -335 222 99 510 265 39 106 chr12 114025319 114025678 -29760777 - L1MC4a LINE L1 -1935 5873 5539 336 209 135 34 chr12 114026381 114026529 -29759926 - L1MC4a LINE L1 -738 5424 5262 475 267 94 64 chr12 114026645 114026887 -29759568 - L1MC4a LINE L1 -1127 5019 4786 1140 43 0 0 chr12 114026887 114027025 -29759430 - L1PA8 LINE L1 -7 6165 6028 475 267 94 64 chr12 114027025 114027304 -29759151 - L1MC4a LINE L1 -1360 4786 4517 1987 108 0 14 chr12 114027304 114027583 -29758872 - AluSx SINE Alu -1 311 37 1596 180 26 4 chr12 114027583 114027854 -29758601 - AluJo SINE Alu -30 282 5 475 267 94 64 chr12 114027854 114028094 -29758361 - L1MC4a LINE L1 -1628 4518 4233 230 284 37 0 chr12 114028108 114028189 -29758266 - L1MC4a LINE L1 -1988 4158 4075 2296 123 0 0 chr12 114028252 114028561 -29757894 - AluSc SINE Alu 0 309 1 21 36 0 0 chr12 114028571 114028599 -29757856 + AT_rich Low_complexity Low_complexity 1 28 0 330 47 0 0 chr12 114028602 114028645 -29757810 - AluSc SINE Alu -7 292 250 262 319 44 0 chr12 114028680 114028771 -29757684 + L2 LINE L2 2941 3035 -237 759 83 0 0 chr12 114028776 114028872 -29757583 + L1PA5 LINE L1 3 98 -6048 * 37096 45 8 6 chr12 114028870 114034394 -29752061 + L1PA5 LINE L1 623 6152 -2 1953 154 3 0 chr12 114034526 114034824 -29751631 - AluSx SINE Alu -13 299 1 2096 96 25 3 chr12 114035894 114036176 -29750279 - AluSq SINE Alu -9 304 17 470 136 0 0 chr12 114036684 114036750 -29749705 + AluS SINE Alu 2 67 -246 1731 156 32 65 chr12 114037123 114037494 -29748961 - MLT1B LTR MaLR -4 386 28 355 292 67 31 chr12 114038023 114038218 -29748237 - MIR SINE MIR -32 230 29 889 275 47 94 chr12 114040824 114041119 -29745336 - L1ME2 LINE L1 -209 5955 5699 1149 183 0 0 chr12 114041119 114041294 -29745161 - FAM SINE Alu 0 175 1 889 275 47 94 chr12 114041294 114041572 -29744883 - L1ME2 LINE L1 -465 5699 5409 1232 182 23 5 chr12 114041615 114041829 -29744626 + MER20 DNA MER1_type 2 219 0 213 178 0 22 chr12 114041832 114041877 -29744578 - MIR3 SINE MIR -14 194 151 257 228 13 51 chr12 114042104 114042183 -29744272 - MIR3 SINE MIR -48 160 85 1323 268 176 49 chr12 114042240 114043231 -29743224 - L2 LINE L2 -5 3308 2171 197 298 0 18 chr12 114043731 114043788 -29742667 + L3 LINE CR1 1462 1517 -60 643 293 0 18 chr12 114043792 114043956 -29742499 + MER5B DNA MER1_type 1 161 -17 766 191 92 40 chr12 114043959 114044132 -29742323 + MLT1A2 LTR MaLR 6 187 -187 517 210 8 16 chr12 114044145 114044269 -29742186 - MLT1B LTR MaLR -55 335 213 255 251 3 0 chr12 114044270 114044332 -29742123 + MLT1B LTR MaLR 312 379 0 362 319 48 48 chr12 114044702 114044912 -29741543 + L2 LINE L2 2540 2749 -565 397 183 0 0 chr12 114044913 114044984 -29741471 + L1MB2 LINE L1 6069 6139 -32 327 25 0 0 chr12 114045004 114045044 -29741411 + (CA)n Simple_repeat Simple_repeat 2 41 0 426 110 82 0 chr12 114046160 114046233 -29740222 - MER58B DNA MER1_type -1 340 262 1722 199 0 0 chr12 114046334 114046625 -29739830 + AluJb SINE Alu 1 291 -21 1380 210 21 35 chr12 114047557 114047847 -29738608 + AluJo SINE Alu 1 286 -26 1625 175 13 23 chr12 114048893 114049196 -29737259 - AluJo SINE Alu -12 300 1 2038 161 3 0 chr12 114049962 114050273 -29736182 + AluSx SINE Alu 1 312 0 2414 88 0 0 chr12 114050907 114051214 -29735241 + AluSx SINE Alu 1 307 -5 1436 144 25 84 chr12 114051420 114051740 -29734715 + AluJo SINE Alu 12 312 0 2085 136 3 0 chr12 114052618 114052913 -29733542 - AluSx SINE Alu -16 296 1 836 148 0 37 chr12 114053128 114053263 -29733192 + FLAM_C SINE Alu 1 130 -3 450 100 0 0 chr12 114053926 114053986 -29732469 - AluJb SINE Alu -14 298 239 766 189 0 15 chr12 114053987 114054119 -29732336 - AluJb SINE Alu -120 192 63 1369 135 14 5 chr12 114054122 114054337 -29732118 + AluY SINE Alu 94 310 -1 3273 165 88 6 chr12 114054346 114054970 -29731485 + L1MB7 LINE L1 5494 6168 -16 513 273 102 5 chr12 114055251 114055456 -29730999 + L2 LINE L2 2154 2378 -936 881 136 0 0 chr12 114055525 114055650 -29730805 - FLAM_C SINE Alu -6 137 13 378 296 113 80 chr12 114055965 114056388 -29730067 + L2 LINE L2 2809 3245 -27 1699 170 18 4 chr12 114056392 114056668 -29729787 + AluJb SINE Alu 1 280 -32 337 293 189 0 chr12 114057301 114057465 -29728990 + MIR SINE MIR 52 246 -16 851 167 15 0 chr12 114058057 114058189 -29728266 - FAM SINE Alu -27 158 25 579 184 10 0 chr12 114058195 114058293 -29728162 - FRAM SINE Alu -70 106 8 26 30 0 0 chr12 114059721 114059754 -29726701 + AT_rich Low_complexity Low_complexity 1 33 0 633 255 115 81 chr12 114059754 114060244 -29726211 + L1ME4a LINE L1 5424 5940 -181 1139 170 103 100 chr12 114060244 114060544 -29725911 + AluJo SINE Alu 1 301 -1 633 255 115 81 chr12 114060544 114060733 -29725722 + L1ME4a LINE L1 5940 6121 0 26 30 0 0 chr12 114061512 114061545 -29724910 + AT_rich Low_complexity Low_complexity 1 33 0 2080 106 36 0 chr12 114061552 114061827 -29724628 - AluSx SINE Alu -27 285 1 1546 179 3 46 chr12 114062245 114062552 -29723903 - AluJb SINE Alu -18 294 1 2245 92 0 16 chr12 114062962 114063265 -29723190 + AluSq SINE Alu 6 303 -10 1191 121 0 0 chr12 114063267 114063424 -29723031 + AluSg/x SINE Alu 134 290 -20 246 303 144 15 chr12 114064230 114064362 -29722093 - MIR SINE MIR -64 198 50 337 293 189 0 chr12 114064673 114064837 -29721618 - MIR SINE MIR -16 246 52 299 259 0 12 chr12 114065308 114065393 -29721062 - MIR SINE MIR 0 262 179 1362 145 4 4 chr12 114065393 114065620 -29720835 - AluJo SINE Alu -1 311 85 481 272 41 20 chr12 114065620 114065767 -29720688 - MIR SINE MIR -98 164 15 1211 196 84 31 chr12 114066144 114066430 -29720025 + AluJo SINE Alu 3 303 -9 376 251 139 106 chr12 114067918 114068467 -29717988 + L1M2 LINE L1 511 1444 -5405 185 304 0 0 chr12 114068840 114068886 -29717569 - L2 LINE L2 -32 3240 3195 3857 192 66 21 chr12 114069486 114069596 -29716859 + L1ME1 LINE L1 5006 5110 -1056 1863 139 25 4 chr12 114069596 114069877 -29716578 + AluJo SINE Alu 7 293 -19 3857 192 66 21 chr12 114069877 114070318 -29716137 + L1ME1 LINE L1 5110 5530 -636 2037 149 7 0 chr12 114070318 114070627 -29715828 - AluSx SINE Alu -1 311 1 3857 192 66 21 chr12 114070627 114071178 -29715277 + L1ME1 LINE L1 5530 6160 -6 252 357 126 0 chr12 114071245 114071427 -29715028 + L2 LINE L2 3108 3312 -1 1613 183 30 20 chr12 114071593 114071893 -29714562 + AluJb SINE Alu 1 303 -9 1951 122 11 109 chr12 114071946 114072314 -29714141 - MER7A DNA MER2_type -16 330 1 1453 265 33 28 chr12 114072732 114073158 -29713297 - L2 LINE L2 -5 3308 2881 268 280 0 0 chr12 114073160 114073240 -29713215 + MER3 DNA MER1_type 41 2334 0 256 224 0 0 chr12 114073334 114073383 -29713072 + MLT1H LTR MaLR 91 139 -410 1949 130 49 3 chr12 114073707 114073991 -29712464 - AluJb SINE Alu -15 297 1 4505 133 46 82 chr12 114074176 114075098 -29711357 - MER21A LTR ERV1 -43 888 1 733 296 109 22 chr12 114075559 114075609 -29710846 + L1M4 LINE L1 3472 3516 -2630 1664 181 38 0 chr12 114075609 114075896 -29710559 + AluJb SINE Alu 1 298 -14 733 296 109 22 chr12 114075896 114076342 -29710113 + L1M4 LINE L1 3516 4011 -2135 1892 147 0 17 chr12 114076387 114076687 -29709768 + AluSc SINE Alu 1 295 -14 357 248 28 9 chr12 114076690 114076799 -29709656 + L1ME3 LINE L1 6051 6161 -1 241 304 28 61 chr12 114076873 114076970 -29709485 + L1M4 LINE L1 4370 4469 -1677 180 0 0 0 chr12 114076970 114076990 -29709465 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2310 83 0 0 chr12 114076990 114077279 -29709176 - AluSc SINE Alu -20 289 1 241 304 28 61 chr12 114077279 114077394 -29709061 + L1M4 LINE L1 4467 4576 -1570 1647 187 0 3 chr12 114077402 114077685 -29708770 - AluJb SINE Alu -30 282 1 248 283 0 0 chr12 114077865 114077918 -29708537 + MER91 DNA MER1_type 138 190 0 2410 76 10 10 chr12 114078390 114078694 -29707761 - AluSp SINE Alu -9 304 1 204 40 0 0 chr12 114078724 114078749 -29707706 + (GA)n Simple_repeat Simple_repeat 1 25 0 385 279 139 0 chr12 114079127 114079292 -29707163 - L1MC4a LINE L1 -1899 5909 5722 1903 133 55 3 chr12 114079304 114079597 -29706858 - AluSg SINE Alu -2 308 1 2229 114 0 3 chr12 114079602 114079900 -29706555 - AluSx SINE Alu -13 299 3 914 141 20 7 chr12 114080049 114080198 -29706257 + AluSg/x SINE Alu 134 323 0 352 0 0 0 chr12 114080198 114080237 -29706218 + (TAA)n Simple_repeat Simple_repeat 2 180 0 305 265 12 0 chr12 114080270 114080353 -29706102 - L1MC4a LINE L1 -2290 5518 5435 364 272 56 31 chr12 114080354 114080516 -29705939 + L2 LINE L2 2641 2806 -508 852 164 0 8 chr12 114080656 114080790 -29705665 - FLAM_C SINE Alu 0 133 1 184 167 28 0 chr12 114084189 114084225 -29702230 - MIR SINE MIR -110 152 116 246 351 82 24 chr12 114084234 114084442 -29702013 - MIR SINE MIR -14 248 29 592 160 11 0 chr12 114084804 114084898 -29701557 + AluJ/FLAM SINE Alu 2 96 -216 1320 200 0 24 chr12 114084994 114085289 -29701166 + AluJo SINE Alu 1 288 -24 213 39 0 0 chr12 114085691 114085717 -29700738 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 309 290 53 15 chr12 114085767 114085898 -29700557 + MIR3 SINE MIR 48 183 -25 213 325 180 39 chr12 114086592 114087014 -29699441 - L2 LINE L2 -666 2648 2287 1655 142 29 32 chr12 114087014 114087323 -29699132 + AluJo SINE Alu 5 312 0 213 325 180 39 chr12 114087323 114087544 -29698911 - L2 LINE L2 -1027 2287 1914 1927 134 3 3 chr12 114088237 114088552 -29697903 - AluSx SINE Alu 0 315 1 1591 182 64 34 chr12 114088997 114089355 -29697100 + MLT1A2 LTR MaLR 1 369 -5 1646 131 22 66 chr12 114090335 114090655 -29695800 - AluJo SINE Alu -2 310 5 1447 184 24 31 chr12 114090667 114090961 -29695494 - AluJo SINE Alu -20 292 1 478 235 173 12 chr12 114090977 114091139 -29695316 - MIR SINE MIR -64 198 11 441 270 57 19 chr12 114091658 114091817 -29694638 + MIR SINE MIR 47 211 -51 753 256 128 47 chr12 114091984 114092285 -29694170 - MLT1H LTR MaLR -6 549 169 2261 69 10 0 chr12 114092285 114092575 -29693880 + AluY SINE Alu 1 293 -18 753 256 128 47 chr12 114092575 114092759 -29693696 - MLT1H LTR MaLR -386 169 1 409 210 26 1 chr12 114092789 114092899 -29693556 - L1MC4 LINE L1 0 8038 7880 533 124 247 21 chr12 114092992 114093089 -29693366 - FLAM_C SINE Alu -14 119 1 1848 153 3 0 chr12 114093099 114093406 -29693049 - AluSx SINE Alu -4 308 1 1708 266 82 16 chr12 114093406 114093955 -29692500 - L1MC4 LINE L1 -406 7636 7052 1270 171 25 13 chr12 114093984 114094223 -29692232 - AluJo SINE Alu -25 287 46 312 27 0 0 chr12 114094223 114094260 -29692195 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 1681 152 11 0 chr12 114094260 114094537 -29691918 - AluJo SINE Alu -32 280 1 614 168 61 15 chr12 114094543 114094674 -29691781 - L1MC4 LINE L1 -1031 7011 6875 419 0 20 0 chr12 114094695 114094746 -29691709 + (CA)n Simple_repeat Simple_repeat 2 53 0 222 294 0 0 chr12 114094997 114095048 -29691407 + MIR SINE MIR 210 260 -2 258 288 72 14 chr12 114095594 114095733 -29690722 + MIR3 SINE MIR 61 207 -1 2505 131 69 5 chr12 114095772 114096177 -29690278 - MER61C LTR ERV1 -3 431 1 18890 105 28 40 chr12 114096177 114098050 -29688405 - MER61C-int LTR ERV1 0 5217 3392 2132 120 0 3 chr12 114098050 114098351 -29688104 + AluSx SINE Alu 11 310 -2 18890 105 28 40 chr12 114098351 114099436 -29687019 - MER61C-int LTR ERV1 -1825 3392 2295 1207 146 10 5 chr12 114099551 114099756 -29686699 + AluSg/x SINE Alu 91 296 -14 1455 193 139 17 chr12 114099804 114100157 -29686298 - MSTD LTR MaLR 0 396 1 365 288 62 17 chr12 114100178 114100355 -29686100 - MLT1J LTR MaLR 0 511 327 530 165 239 0 chr12 114100363 114100472 -29685983 + MER58A DNA MER1_type 1 135 0 254 224 0 0 chr12 114100658 114100707 -29685748 - MLT1J LTR MaLR -410 139 91 1877 103 0 4 chr12 114100874 114101137 -29685318 + AluY SINE Alu 1 262 -49 389 271 57 48 chr12 114101353 114101534 -29684921 + MER5A DNA MER1_type 1 170 -8 276 231 259 28 chr12 114101701 114101809 -29684646 + MER5A DNA MER1_type 57 189 0 1943 160 20 0 chr12 114153278 114153584 -29632871 - AluSx SINE Alu 0 312 1 2098 106 4 0 chr12 114153982 114154257 -29632198 + AluSx SINE Alu 21 296 -16 229 196 0 39 chr12 114154303 114154354 -29632101 + L1 LINE L1 3526 3574 -2572 * 368 250 40 40 chr12 114154334 114154486 -29631969 + L1MC/D LINE L1 5588 5739 -2046 2588 47 3 3 chr12 114154529 114154828 -29631627 + AluY SINE Alu 1 299 -12 968 196 22 57 chr12 114154836 114155066 -29631389 + AluJb SINE Alu 87 308 -4 308 273 126 33 chr12 114155653 114155836 -29630619 + MIR SINE MIR 46 245 -17 1726 182 3 14 chr12 114156759 114157055 -29629400 + AluJo SINE Alu 1 293 -19 2711 264 61 70 chr12 114158130 114158476 -29627979 + ERVL LTR ERVL 3605 3953 -1811 2285 125 0 3 chr12 114158476 114158789 -29627666 + AluSx SINE Alu 1 312 0 2711 264 61 70 chr12 114158789 114159099 -29627356 + ERVL LTR ERVL 3953 4264 -1500 1511 171 70 89 chr12 114159099 114159539 -29626916 + MSTB1 LTR MaLR 1 432 0 2711 264 61 70 chr12 114159539 114160046 -29626409 + ERVL LTR ERVL 4264 4758 -1006 2015 214 69 26 chr12 114160061 114160523 -29625932 - MER74A LTR ERVL -17 541 60 3187 117 22 70 chr12 114160947 114161530 -29624925 - LTR10A LTR ERV1 -54 555 1 1463 197 46 20 chr12 114161609 114161941 -29624514 - AluJo SINE Alu 0 312 1 256 241 160 19 chr12 114162303 114162493 -29623962 + LTR41 LTR ERVL 584 793 -2 347 237 35 74 chr12 114162614 114162803 -29623652 + L1M4c LINE L1 1405 1591 -4837 1585 182 7 14 chr12 114162804 114163079 -29623376 + AluJb SINE Alu 1 273 -39 2365 174 32 16 chr12 114163079 114163572 -29622883 + Charlie5 DNA MER1_type 1066 1566 -1046 676 206 32 7 chr12 114163641 114163796 -29622659 + Charlie5 DNA MER1_type 1741 1899 -713 362 133 56 67 chr12 114164354 114164444 -29622011 - MER20 DNA MER1_type -130 89 1 2238 120 0 0 chr12 114164493 114164792 -29621663 - AluSq SINE Alu -14 299 1 2477 81 0 0 chr12 114164983 114165292 -29621163 + LTR12 LTR ERV1 406 714 0 17460 100 19 6 chr12 114165292 114167704 -29618751 + HERV9 LTR ERV1 1 2445 -5954 7329 78 1 9 chr12 114167697 114168648 -29617807 + HERV9 LTR ERV1 3445 4387 -4012 * 3807 134 9 2 chr12 114168652 114169213 -29617242 - HERV30 LTR ERV1 -722 7535 6971 453 143 26 0 chr12 114169218 114169295 -29617160 + LTR5 LTR ERVK 4 82 -887 1769 106 51 4 chr12 114169295 114169549 -29616906 - HERVK LTR ERVK -6977 266 1 5721 155 21 20 chr12 114169549 114170517 -29615938 - LTR5 LTR ERVK 0 969 1 2774 160 11 0 chr12 114170523 114170974 -29615481 - HERV30 LTR ERV1 -1289 6968 6513 10862 99 16 9 chr12 114171065 114171879 -29614576 - HERV30 LTR ERV1 -1748 6509 5679 2901 10 0 0 chr12 114171879 114172186 -29614269 + AluYb8 SINE Alu 1 307 -11 10862 99 16 9 chr12 114172186 114172843 -29613612 - HERV30 LTR ERV1 -2578 5679 5028 3652 67 2 0 chr12 114172844 114173305 -29613150 - L1PA5 LINE L1 -2 6152 5691 779 142 0 0 chr12 114173307 114173434 -29613021 + FRAM SINE Alu 49 175 -1 467 251 22 77 chr12 114173878 114174061 -29612394 - MIR SINE MIR -67 195 23 828 217 88 18 chr12 114174710 114174936 -29611519 - MIR SINE MIR -19 243 2 240 278 78 17 chr12 114175623 114175738 -29610717 + L2 LINE L2 2394 2515 -799 182 292 34 22 chr12 114175752 114175841 -29610614 + MIR SINE MIR 23 112 -150 2026 107 0 0 chr12 114176843 114177104 -29609351 - AluSc SINE Alu -16 293 33 226 236 109 55 chr12 114177467 114177577 -29608878 + MIR SINE MIR 82 197 -65 182 292 34 22 chr12 114177612 114177701 -29608754 - MIR SINE MIR -150 112 23 22 0 0 0 chr12 114177832 114177854 -29608601 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 114178193 114178216 -29608239 + AT_rich Low_complexity Low_complexity 1 23 0 290 122 0 20 chr12 114178351 114178400 -29608055 - MADE1 DNA Mariner -30 50 3 1710 298 25 11 chr12 114178805 114179536 -29606919 + L1ME LINE L1 4219 4959 -1187 904 267 11 22 chr12 114180318 114180643 -29605812 + L1ME LINE L1 5290 5606 -560 546 230 34 14 chr12 114180644 114180792 -29605663 + L1MA10 LINE L1 6175 6325 -9 431 249 267 25 chr12 114181800 114182085 -29604370 + L2 LINE L2 1638 1991 -1323 2249 88 3 47 chr12 114182484 114182801 -29603654 - AluSg SINE Alu -7 303 1 23 33 0 0 chr12 114183456 114183486 -29602969 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr12 114183558 114183600 -29602855 + AT_rich Low_complexity Low_complexity 1 42 0 2117 96 17 0 chr12 114184547 114184839 -29601616 + AluSx SINE Alu 7 303 -9 482 79 34 101 chr12 114186597 114186686 -29599769 - AluSq SINE Alu -110 203 121 781 11 0 0 chr12 114186690 114186780 -29599675 - L1HS LINE L1 -2 6153 6064 1013 90 0 8 chr12 114186785 114186919 -29599536 - AluSq SINE Alu -180 133 1 372 115 0 0 chr12 114188106 114188113 -29598342 + (GA)n Simple_repeat Simple_repeat 1 7 -54 1855 154 7 0 chr12 114188113 114188398 -29598057 + AluSx SINE Alu 17 303 -9 372 115 0 0 chr12 114188398 114188451 -29598004 + (GA)n Simple_repeat Simple_repeat 6 61 0 758 222 176 23 chr12 114189015 114189367 -29597088 - LTR56 LTR ERV1 0 445 40 1134 177 8 31 chr12 114189850 114190104 -29596351 + Tigger1 DNA MER2_type 1 248 -2170 2729 116 41 55 chr12 114190104 114190597 -29595858 + LTR19A LTR ERV1 1 486 0 8654 102 28 21 chr12 114190597 114192016 -29594439 + LTR19A-int LTR ERV1 1 1503 -4083 2182 113 3 0 chr12 114192016 114192335 -29594120 - AluSx SINE Alu 0 320 1 8654 102 28 21 chr12 114192335 114193046 -29593409 + LTR19A-int LTR ERV1 1503 2207 -3379 2525 93 0 3 chr12 114193078 114193423 -29593032 + L1PA8 LINE L1 5829 6172 0 2291 52 0 0 chr12 114193612 114193881 -29592574 + AluY SINE Alu 1 269 -42 242 0 0 0 chr12 114193881 114193909 -29592546 + AluY SINE Alu 254 281 -20 1200 69 0 0 chr12 114193912 114194071 -29592384 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 693 192 0 0 chr12 114194568 114194693 -29591762 + AluSg/x SINE Alu 134 258 -54 24 0 0 0 chr12 114196716 114196740 -29589715 + AT_rich Low_complexity Low_complexity 1 24 0 427 93 0 0 chr12 114197554 114197608 -29588847 + AluSc SINE Alu 60 113 -196 1614 101 57 0 chr12 114198279 114198506 -29587949 - AluSc SINE Alu -14 295 56 2440 102 0 0 chr12 114198697 114199010 -29587445 - AluSq SINE Alu 0 313 1 315 0 0 0 chr12 114199316 114199351 -29587104 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr12 114199350 114199381 -29587074 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1409 242 61 16 chr12 114199351 114199798 -29586657 + L1M4 LINE L1 3966 4404 -1742 184 275 77 44 chr12 114199864 114199955 -29586500 - L2 LINE L2 -473 2841 2748 453 272 44 6 chr12 114200087 114200245 -29586210 - MIR SINE MIR -26 236 73 1555 261 72 7 chr12 114200615 114201163 -29585292 - L1ME1 LINE L1 -153 6013 5557 620 225 24 18 chr12 114201175 114201344 -29585111 + L1M4 LINE L1 1735 1904 -4480 3616 131 22 0 chr12 114201382 114201964 -29584491 + L1PA15-16 LINE L1 1951 2545 -4304 381 55 8 8 chr12 114202308 114202372 -29584083 + L1PA15-16 LINE L1 2528 2591 -4258 * 17881 101 10 1 chr12 114202365 114204947 -29581508 + L1P LINE L1 1771 4373 -1773 305 239 0 26 chr12 114204947 114205064 -29581391 + pTR5 LTR ERV1 747 860 -1578 5165 93 97 4 chr12 114205388 114206144 -29580311 + LTR12 LTR ERV1 1 826 0 7634 78 22 3 chr12 114206144 114207924 -29578531 + L1PA7 LINE L1 4364 6150 -4 1551 157 14 60 chr12 114207965 114208316 -29578139 - L1MA9 LINE L1 -32 6280 5946 4664 135 51 13 chr12 114208326 114209155 -29577300 - Tigger3b DNA MER2_type -371 860 1 2414 155 27 0 chr12 114209155 114209568 -29576887 - L1MA9 LINE L1 -506 5785 5362 2294 239 19 11 chr12 114209560 114210197 -29576258 + L1M4 LINE L1 2573 3214 -3168 * 722 214 34 47 chr12 114210921 114211155 -29575300 + L1MA9 LINE L1 5866 6096 -216 423 209 94 94 chr12 114211158 114211359 -29575096 + L1MA9 LINE L1 6046 6246 -66 337 256 78 0 chr12 114211360 114211489 -29574966 - MER3 DNA MER1_type -87 122 31 22 0 0 0 chr12 114211538 114211560 -29574895 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr12 114211707 114211751 -29574704 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 239 22 0 chr12 114212117 114212163 -29574292 - L3 LINE CR1 -401 1176 1130 489 157 41 6 chr12 114212176 114212288 -29574167 - MSTC LTR MaLR -262 112 1 2248 114 7 3 chr12 114212429 114212736 -29573719 + AluSc SINE Alu 1 308 -1 1655 139 89 14 chr12 114213125 114213405 -29573050 - AluJb SINE Alu -1 311 11 341 225 202 31 chr12 114213405 114213534 -29572921 - MER58A DNA MER1_type -32 192 42 189 125 75 25 chr12 114214785 114214825 -29571630 - MIR SINE MIR -112 150 109 2323 93 0 13 chr12 114214847 114215158 -29571297 - AluSc SINE Alu 0 309 3 27 81 0 0 chr12 114216150 114216212 -29570243 + AT_rich Low_complexity Low_complexity 1 62 0 2145 137 0 3 chr12 114216917 114217230 -29569225 - AluSx SINE Alu 0 312 1 1624 141 46 14 chr12 114217506 114217790 -29568665 - L1MA5A LINE L1 -4 6293 6001 203 206 44 15 chr12 114218037 114218105 -29568350 + (TA)n Simple_repeat Simple_repeat 1 70 0 182 103 73 44 chr12 114218113 114218181 -29568274 + (TATAA)n Simple_repeat Simple_repeat 3 72 0 2067 124 0 33 chr12 114218702 114219009 -29567446 - AluSx SINE Alu -15 297 1 1909 142 7 7 chr12 114220061 114220350 -29566105 + AluSx SINE Alu 3 291 -21 463 238 0 0 chr12 114222642 114222747 -29563708 - L1PB4 LINE L1 -12 6144 6040 1514 169 13 50 chr12 114224991 114225293 -29561162 - AluJb SINE Alu -21 291 1 539 170 80 101 chr12 114225609 114225650 -29560805 - L1M4 LINE L1 -3176 2970 2930 748 177 0 0 chr12 114225650 114225774 -29560681 - FLAM_A SINE Alu -9 124 1 539 170 80 101 chr12 114225774 114226008 -29560447 - L1M4 LINE L1 -3216 2930 2701 2080 86 0 0 chr12 114226628 114226916 -29559539 + AluSg SINE Alu 26 313 0 769 171 0 29 chr12 114227026 114227166 -29559289 + AluJo SINE Alu 1 136 -176 788 248 135 7 chr12 114227963 114228245 -29558210 - MER33 DNA MER1_type -6 318 1 2344 82 0 20 chr12 114228862 114229166 -29557289 - AluSg SINE Alu -12 298 1 350 197 121 0 chr12 114229274 114229340 -29557115 + MER3 DNA MER1_type 37 110 -99 722 107 57 7 chr12 114229345 114229485 -29556970 + MER3 DNA MER1_type 2469 2615 0 384 217 239 14 chr12 114229507 114229645 -29556810 - MER5A DNA MER1_type -6 183 15 2411 98 0 0 chr12 114230651 114230958 -29555497 - AluSc SINE Alu -2 307 1 408 195 42 8 chr12 114230958 114231076 -29555379 - L1M4 LINE L1 -3226 2920 2799 1005 220 23 4 chr12 114231421 114231680 -29554775 + L1MA4 LINE L1 6036 6299 -1 2007 169 8 32 chr12 114232247 114232620 -29553835 + MLT1A1 LTR MaLR 2 365 0 538 270 26 21 chr12 114232703 114232936 -29553519 + L1ME LINE L1 5451 5684 -486 409 319 83 0 chr12 114232958 114233115 -29553340 + MIR SINE MIR 15 184 -78 2575 74 0 0 chr12 114233329 114233638 -29552817 - AluY SINE Alu -2 309 1 287 243 18 45 chr12 114233718 114233829 -29552626 - LTR41 LTR ERVL -6 767 660 2601 53 0 0 chr12 114234271 114234572 -29551883 - AluY SINE Alu -10 301 1 198 243 117 58 chr12 114234887 114234990 -29551465 + L2 LINE L2 3145 3253 -19 22 0 0 0 chr12 114235042 114235064 -29551391 + AT_rich Low_complexity Low_complexity 1 22 0 2982 124 13 2 chr12 114235065 114235526 -29550929 - L1MA3 LINE L1 -2 6303 5838 2106 158 59 35 chr12 114236075 114236618 -29549837 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr12 114237279 114237302 -29549153 + AT_rich Low_complexity Low_complexity 1 23 0 660 225 22 16 chr12 114237489 114237671 -29548784 + L1MD3 LINE L1 7323 7505 -490 21 0 0 0 chr12 114237910 114237931 -29548524 + AT_rich Low_complexity Low_complexity 1 21 0 2197 88 29 0 chr12 114238289 114238586 -29547869 - AluSc SINE Alu 0 305 1 1678 164 25 0 chr12 114238782 114238955 -29547500 - AluJo SINE Alu -14 298 114 188 35 35 0 chr12 114238955 114238984 -29547471 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1678 164 25 0 chr12 114238984 114239090 -29547365 - AluJo SINE Alu -198 114 12 887 201 11 0 chr12 114239197 114239371 -29547084 - FRAM SINE Alu -8 168 1 25 0 0 0 chr12 114239537 114239562 -29546893 + AT_rich Low_complexity Low_complexity 1 25 0 2359 113 126 5 chr12 114241435 114241817 -29544638 + MSTA LTR MaLR 1 428 0 361 143 60 12 chr12 114242084 114242168 -29544287 - L1MC5 LINE L1 -45 7916 7829 814 211 80 91 chr12 114242268 114242618 -29543837 - L1MC5 LINE L1 -919 7042 6697 230 310 133 0 chr12 114243203 114243316 -29543139 + L2 LINE L2 3143 3270 -2 263 305 144 6 chr12 114243417 114243584 -29542871 + MIR SINE MIR 72 261 -1 181 234 21 0 chr12 114243691 114243738 -29542717 - L2 LINE L2 -15 3257 3210 23 54 0 0 chr12 114244559 114244596 -29541859 + GC_rich Low_complexity Low_complexity 1 37 0 2939 7 0 0 chr12 114245074 114245384 -29541071 - AluYa5 SINE Alu -1 310 1 200 244 0 0 chr12 114246039 114246080 -29540375 + (TA)n Simple_repeat Simple_repeat 2 42 0 1929 179 23 32 chr12 114246302 114246649 -29539806 - L1MB5 LINE L1 0 6174 5830 1823 185 22 11 chr12 114246649 114247006 -29539449 + MLT1A1 LTR MaLR 5 365 0 1929 179 23 32 chr12 114247006 114247089 -29539366 - L1MB5 LINE L1 -344 5830 5748 207 114 0 0 chr12 114247656 114247691 -29538764 + (TG)n Simple_repeat Simple_repeat 2 36 0 303 250 0 0 chr12 114247705 114247769 -29538686 + MLT1E1 LTR MaLR 571 634 -20 374 179 13 13 chr12 114249113 114249191 -29537264 - MIR SINE MIR -164 98 21 248 377 65 7 chr12 114249645 114249783 -29536672 + L2 LINE L2 3112 3257 -15 2531 94 35 27 chr12 114250299 114250702 -29535753 - L1PA11 LINE L1 -7 6167 5762 329 209 28 46 chr12 114253833 114253959 -29532496 + L1MC/D LINE L1 5601 5718 -498 238 279 82 32 chr12 114254017 114254175 -29532280 - L1MDa LINE L1 -4179 2361 2196 5999 48 3 132 chr12 114254905 114255853 -29530602 - LTR12 LTR ERV1 0 826 1 847 138 69 0 chr12 114256701 114256800 -29529655 + L1PA16 LINE L1 5898 5989 -177 186 43 0 0 chr12 114256800 114256823 -29529632 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 847 138 69 0 chr12 114256823 114256940 -29529515 + L1PA16 LINE L1 5989 6164 -2 2307 96 3 0 chr12 114256998 114257291 -29529164 + AluSx SINE Alu 2 295 -17 1709 143 31 14 chr12 114257632 114257919 -29528536 + Tigger2 DNA MER2_type 2427 2718 0 1527 196 13 39 chr12 114257974 114258285 -29528170 - AluJo SINE Alu -9 303 1 300 120 0 0 chr12 114258337 114258387 -29528068 + (TG)n Simple_repeat Simple_repeat 2 51 0 356 237 114 0 chr12 114258564 114258678 -29527777 + L2 LINE L2 3142 3268 -4 435 269 26 39 chr12 114258697 114258853 -29527602 + MER90 LTR ERV1 1 154 -421 485 259 23 24 chr12 114258907 114259181 -29527274 + MER90 LTR ERV1 289 602 -12 708 268 13 18 chr12 114259246 114259474 -29526981 - MIR SINE MIR -21 241 15 180 125 0 0 chr12 114259564 114259596 -29526859 + (GGAGAA)n Simple_repeat Simple_repeat 4 35 0 234 163 31 54 chr12 114259858 114259987 -29526468 + GA-rich Low_complexity Low_complexity 1 126 0 239 315 0 0 chr12 114259988 114260080 -29526375 - L1MC4 LINE L1 -1337 6705 6614 232 247 47 0 chr12 114260034 114260119 -29526336 + L1MC4 LINE L1 6614 6702 -1340 * 191 59 0 29 chr12 114260142 114260176 -29526279 + (CA)n Simple_repeat Simple_repeat 2 34 0 557 221 184 37 chr12 114260524 114260741 -29525714 + MIR SINE MIR 8 256 -6 3470 137 18 59 chr12 114260772 114260978 -29525477 + MER6A DNA MER2_type 1 214 -651 2017 146 0 0 chr12 114260978 114261272 -29525183 + AluJb SINE Alu 1 294 -18 3470 137 18 59 chr12 114261272 114261539 -29524916 + MER6A DNA MER2_type 214 444 -421 2576 57 0 0 chr12 114261539 114261840 -29524615 + AluY SINE Alu 1 301 -10 3470 137 18 59 chr12 114261840 114261994 -29524461 + MER6A DNA MER2_type 444 603 -2 209 273 136 0 chr12 114262457 114262567 -29523888 - MIR SINE MIR -12 250 126 332 294 89 7 chr12 114263285 114263431 -29523024 - MIR SINE MIR -51 211 54 270 250 0 0 chr12 114263617 114263689 -29522766 + L2 LINE L2 3201 3272 0 2009 249 86 30 chr12 114264795 114265289 -29521166 - MER69 DNA AcHobo -9 2517 1961 351 0 0 0 chr12 114265289 114265328 -29521127 + (TG)n Simple_repeat Simple_repeat 1 39 0 2009 249 86 30 chr12 114265328 114265621 -29520834 - MER69 DNA AcHobo -565 1961 1686 1168 291 24 57 chr12 114265625 114266079 -29520376 - MER69 DNA AcHobo -1832 694 256 449 143 0 0 chr12 114266134 114266204 -29520251 - L1PA8A LINE L1 -2634 3512 3443 12650 110 1 12 chr12 114266204 114268066 -29518389 + L1PA8A LINE L1 3527 5381 -750 2291 109 7 0 chr12 114268066 114268360 -29518095 + AluSg SINE Alu 1 296 -14 12650 110 1 12 chr12 114268360 114269099 -29517356 + L1PA8A LINE L1 5381 6127 -4 992 279 104 27 chr12 114269238 114270070 -29516385 + L1ME3A LINE L1 4900 5790 -380 212 160 64 32 chr12 114270444 114270538 -29515917 + (TTTG)n Simple_repeat Simple_repeat 4 100 0 180 77 0 0 chr12 114270748 114270774 -29515681 + (GTGTG)n Simple_repeat Simple_repeat 3 28 0 1477 202 13 13 chr12 114270788 114271105 -29515350 + MER44D DNA MER2_type 23 609 0 412 250 92 0 chr12 114271105 114271225 -29515230 + L1ME3A LINE L1 5782 5912 -258 409 221 74 27 chr12 114271226 114271375 -29515080 - MIR SINE MIR -34 228 73 924 203 105 52 chr12 114271893 114272198 -29514257 - MER33 DNA MER1_type 0 324 4 533 281 14 0 chr12 114272313 114272452 -29514003 - MIR SINE MIR -81 181 41 337 229 114 29 chr12 114272832 114272937 -29513518 + MER81 DNA DNA 1 114 0 881 323 34 42 chr12 114273127 114273631 -29512824 + L2 LINE L2 2625 3121 -151 288 0 0 0 chr12 114273631 114273663 -29512792 + (TG)n Simple_repeat Simple_repeat 2 33 0 881 323 34 42 chr12 114273663 114273812 -29512643 + L2 LINE L2 3121 3270 -2 1643 194 7 7 chr12 114274034 114274358 -29512097 - AluJo SINE Alu 0 324 1 2406 87 0 7 chr12 114274374 114274673 -29511782 + AluSp SINE Alu 1 297 -16 255 282 12 0 chr12 114274876 114274961 -29511494 + MIR SINE MIR 49 134 -128 359 296 89 7 chr12 114275808 114275943 -29510512 + MIR SINE MIR 21 166 -96 380 186 0 161 chr12 114275984 114276108 -29510347 - MER102b DNA MER1_type -15 326 223 261 263 0 0 chr12 114276276 114276333 -29510122 - MER102b DNA MER1_type -149 192 136 1953 136 3 17 chr12 114276367 114276668 -29509787 - AluJo SINE Alu -15 297 1 342 227 34 0 chr12 114276712 114276800 -29509655 + MIR SINE MIR 75 165 -97 440 231 88 27 chr12 114276800 114276947 -29509508 - MIR SINE MIR -43 219 64 421 269 46 51 chr12 114277803 114278019 -29508436 + MIR SINE MIR 17 231 -31 327 263 81 73 chr12 114278376 114278623 -29507832 + MLT1H LTR MaLR 74 322 -227 228 217 130 0 chr12 114278685 114278754 -29507701 + MLT1I LTR MaLR 323 400 -9 666 304 16 5 chr12 114278828 114279022 -29507433 - LTR33 LTR ERVL -318 203 8 2641 127 33 28 chr12 114279023 114279449 -29507006 - MSTA LTR MaLR 0 428 1 253 336 134 9 chr12 114279922 114280154 -29506301 + MIR SINE MIR 1 261 -1 307 350 12 12 chr12 114280715 114280875 -29505580 + (CCCA)n Simple_repeat Simple_repeat 2 161 0 * 321 280 27 20 chr12 114280783 114280933 -29505522 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 385 232 22 54 chr12 114280956 114281141 -29505314 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 256 282 14 0 chr12 114281156 114281227 -29505228 - L2 LINE L2 0 3313 3242 347 393 16 6 chr12 114281356 114281539 -29504916 + MIR SINE MIR 13 197 -65 1352 233 43 3 chr12 114281563 114281885 -29504570 + MLT1E3 LTR MaLR 290 624 0 202 259 0 19 chr12 114281888 114281942 -29504513 - MIR SINE MIR -158 104 52 635 294 38 5 chr12 114283107 114283318 -29503137 - MIR SINE MIR -37 225 8 204 40 0 0 chr12 114283559 114283584 -29502871 + (CAATT)n Simple_repeat Simple_repeat 3 27 0 762 326 70 30 chr12 114283587 114284251 -29502204 - L2 LINE L2 0 3313 2609 500 295 119 88 chr12 114284289 114284675 -29501780 + L2 LINE L2 2863 3260 -12 2222 108 0 7 chr12 114284776 114285071 -29501384 - AluSc SINE Alu -16 293 1 513 330 19 11 chr12 114285119 114285344 -29501111 - MIR SINE MIR -30 232 7 284 320 156 8 chr12 114285358 114285480 -29500975 - L2 LINE L2 0 3272 3133 7505 180 37 12 chr12 114286540 114288738 -29497717 + L1MA4 LINE L1 1 2223 -4065 7717 208 13 17 chr12 114288840 114290840 -29495615 + L1MA4 LINE L1 2657 4691 -1637 635 205 23 171 chr12 114291901 114292164 -29494291 - MIR SINE MIR -18 244 21 5759 146 37 26 chr12 114293820 114295419 -29491036 + L1MA4 LINE L1 4843 6476 -6 242 286 0 14 chr12 114295893 114295963 -29490492 + MER113 DNA MER1_type? 453 521 0 576 225 40 52 chr12 114296045 114296218 -29490237 - MIR SINE MIR -12 250 80 325 280 30 0 chr12 114297217 114297317 -29489138 - MIR SINE MIR -54 208 106 2234 113 3 3 chr12 114297353 114297664 -29488791 + AluSx SINE Alu 1 311 -1 1121 165 65 50 chr12 114297675 114297935 -29488520 - MER96B DNA MER1_type? -1 416 153 389 197 0 0 chr12 114297968 114298039 -29488416 + MER96B DNA MER1_type? 347 417 0 244 330 21 0 chr12 114298039 114298133 -29488322 + L2 LINE L2 2678 2773 -541 570 324 28 6 chr12 114298235 114298411 -29488044 + MIR SINE MIR 12 191 -71 195 212 0 0 chr12 114298470 114298503 -29487952 + MIR SINE MIR 217 249 -13 676 247 16 93 chr12 114298509 114298756 -29487699 - MIR SINE MIR -6 256 29 318 375 39 23 chr12 114298787 114298915 -29487540 + L2 LINE L2 3125 3254 -18 298 335 51 51 chr12 114299070 114299479 -29486976 + L2 LINE L2 2344 2752 -562 238 386 0 0 chr12 114299493 114299594 -29486861 + Charlie7 DNA MER1_type 1 101 -2511 1039 251 99 44 chr12 114299657 114299766 -29486689 - LTR16A1 LTR ERVL -3 454 352 1830 137 0 25 chr12 114299766 114300051 -29486404 + AluJb SINE Alu 16 293 -19 1039 251 99 44 chr12 114300051 114300303 -29486152 - LTR16A1 LTR ERVL -105 352 73 333 336 44 44 chr12 114300340 114300569 -29485886 - HAL1b LINE L1 -1091 257 29 483 269 0 28 chr12 114300689 114300830 -29485625 + LTR16A1 LTR ERVL 294 430 -27 221 0 35 0 chr12 114300930 114300959 -29485496 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2049 80 4 8 chr12 114300959 114301221 -29485234 - AluY SINE Alu -33 278 18 244 356 44 0 chr12 114301558 114301648 -29484807 + L2 LINE L2 3218 3311 -2 204 97 0 0 chr12 114301674 114301705 -29484750 + (TTA)n Simple_repeat Simple_repeat 2 32 0 850 225 90 0 chr12 114301720 114301920 -29484535 - MIR SINE MIR -21 241 24 208 281 104 30 chr12 114302092 114302227 -29484228 + MIR3 SINE MIR 1 145 -63 662 300 52 9 chr12 114302581 114302814 -29483641 + MIR SINE MIR 8 250 -12 815 260 20 0 chr12 114302963 114303163 -29483292 - MIR SINE MIR -10 252 49 351 278 97 45 chr12 114303741 114303917 -29482538 + MIR3 SINE MIR 1 185 -23 1222 44 0 27 chr12 114304811 114304994 -29481461 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1319 67 0 6 chr12 114305029 114305209 -29481246 + (TTC)n Simple_repeat Simple_repeat 2 180 0 372 226 36 0 chr12 114305453 114305537 -29480918 - MIR SINE MIR -70 192 106 617 248 7 22 chr12 114305614 114305751 -29480704 - MIR SINE MIR -127 135 1 285 128 0 0 chr12 114305876 114305923 -29480532 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 884 270 186 14 chr12 114305923 114306412 -29480043 - L2 LINE L2 0 3272 2709 625 222 93 0 chr12 114306504 114306666 -29479789 - MIR SINE MIR 0 262 86 289 298 16 83 chr12 114307245 114307366 -29479089 + MIR SINE MIR 3 115 -147 217 254 18 0 chr12 114307494 114307549 -29478906 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 521 242 118 7 chr12 114307550 114307717 -29478738 - MIR SINE MIR -58 204 19 234 273 76 23 chr12 114308240 114308372 -29478083 + MIR SINE MIR 84 222 -40 466 239 8 31 chr12 114308426 114308556 -29477899 + LTR67 LTR ERVL 6 132 -425 545 322 21 29 chr12 114308604 114308634 -29477821 - L1ME3A LINE L1 0 6170 6141 2499 66 0 0 chr12 114308634 114308935 -29477520 + AluY SINE Alu 1 301 -10 545 322 21 29 chr12 114308935 114309143 -29477312 - L1ME3A LINE L1 -29 6141 5934 207 0 0 0 chr12 114309156 114309179 -29477276 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2650 59 3 12 chr12 114309179 114309520 -29476935 - L1PA8A LINE L1 -27 6104 5767 1882 224 77 55 chr12 114309506 114309602 -29476853 - L1ME3A LINE L1 -232 5938 5846 * 2061 145 3 0 chr12 114309602 114309906 -29476549 - AluJb SINE Alu -7 305 1 1882 224 77 55 chr12 114309906 114310345 -29476110 - L1ME3A LINE L1 -324 5846 5418 2337 95 10 0 chr12 114310345 114310651 -29475804 - AluY SINE Alu -2 309 1 1882 224 77 55 chr12 114310651 114311242 -29475213 - L1ME3A LINE L1 -752 5418 4782 268 282 90 75 chr12 114311244 114311499 -29474956 + LTR67 LTR ERVL 184 442 -115 557 288 112 5 chr12 114312083 114312298 -29474157 - MIR SINE MIR -15 247 10 306 321 46 9 chr12 114312366 114312475 -29473980 - MIR SINE MIR -103 159 47 395 250 83 65 chr12 114312608 114312776 -29473679 - MER69A DNA AcHobo -1 176 6 495 276 114 65 chr12 114312986 114313294 -29473161 + MER5C DNA MER1_type 2 324 0 2722 212 90 8 chr12 114313581 114314181 -29472274 - MLT1E1 LTR MaLR 0 654 6 193 319 44 11 chr12 114314194 114314285 -29472170 - MER5A DNA MER1_type -48 141 48 422 287 39 21 chr12 114314294 114314453 -29472002 + MIR SINE MIR 31 190 -59 561 188 121 67 chr12 114314512 114314635 -29471820 + MER5B DNA MER1_type 3 138 -40 1767 151 21 7 chr12 114314635 114314971 -29471484 - AluJo SINE Alu 0 340 1 561 188 121 67 chr12 114314971 114314995 -29471460 + MER5B DNA MER1_type 138 159 -19 517 275 64 76 chr12 114315026 114315406 -29471049 - MLT1H LTR MaLR -25 384 50 181 289 22 0 chr12 114315483 114315528 -29470927 + L2 LINE L2 3251 3296 -17 22 35 0 0 chr12 114315942 114315971 -29470484 + AT_rich Low_complexity Low_complexity 1 29 0 218 349 9 19 chr12 114316658 114316764 -29469691 - MIR3 SINE MIR -53 155 51 834 265 8 17 chr12 114316897 114317135 -29469320 - MIR SINE MIR -6 256 21 431 287 9 0 chr12 114317834 114317949 -29468506 - MER117 DNA MER1_type -50 147 32 279 0 0 0 chr12 114318098 114318129 -29468326 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8039 28 0 0 chr12 114318129 114319402 -29467053 - L1PA4 LINE L1 -18 6137 4865 772 313 9 13 chr12 114319480 114319710 -29466745 + MIR SINE MIR 26 254 -8 388 294 76 8 chr12 114319783 114319937 -29466518 - MIR SINE MIR -62 146 11 2005 171 0 0 chr12 114319989 114320336 -29466119 - AluSx SINE Alu 0 347 1 552 209 56 97 chr12 114320336 114320604 -29465851 + L2 LINE L2 3057 3313 0 265 391 51 17 chr12 114320661 114320896 -29465559 - MIR SINE MIR 0 262 20 476 104 15 0 chr12 114321024 114321091 -29465364 - MLT1C LTR MaLR 0 467 400 805 182 0 8 chr12 114321092 114321224 -29465231 + FLAM_C SINE Alu 2 132 -11 1909 163 123 13 chr12 114321226 114321600 -29464855 - MLT1C LTR MaLR -52 415 1 201 94 0 0 chr12 114321609 114321641 -29464814 + (TA)n Simple_repeat Simple_repeat 1 32 0 4519 217 43 57 chr12 114321700 114323022 -29463433 - L1MB8 LINE L1 -8 6170 4894 3069 158 2 40 chr12 114323022 114323420 -29463035 - MER66B LTR ERV1 0 486 109 1979 143 0 3 chr12 114323420 114323714 -29462741 - AluJb SINE Alu -15 297 5 3069 158 2 40 chr12 114323714 114323820 -29462635 - MER66B LTR ERV1 -377 109 1 4519 217 43 57 chr12 114323820 114324284 -29462171 - L1MB8 LINE L1 -1284 4894 4425 343 286 170 16 chr12 114324501 114324683 -29461772 - MIR SINE MIR -19 243 34 231 221 19 144 chr12 114324998 114325102 -29461353 + MER5A DNA MER1_type 77 167 -22 337 285 62 15 chr12 114325162 114325292 -29461163 + MIR SINE MIR 112 247 -15 331 320 77 22 chr12 114325400 114325581 -29460874 + MIR SINE MIR 22 212 -50 968 218 0 16 chr12 114325762 114325955 -29460500 - MIR SINE MIR -24 238 49 270 0 0 0 chr12 114326595 114326625 -29459830 + (TG)n Simple_repeat Simple_repeat 2 31 0 822 278 20 24 chr12 114327432 114327680 -29458775 + MIR SINE MIR 15 261 -1 1288 176 17 13 chr12 114328209 114328447 -29458008 - AluJo SINE Alu -6 306 68 717 276 42 5 chr12 114328554 114328746 -29457709 + MIR SINE MIR 32 230 -32 191 366 50 0 chr12 114329105 114329206 -29457249 - L2 LINE L2 -502 2812 2707 223 244 0 0 chr12 114329213 114329258 -29457197 + (ATG)n Simple_repeat Simple_repeat 3 47 0 319 219 37 37 chr12 114329264 114329346 -29457109 - MIR SINE MIR -18 244 163 499 328 80 17 chr12 114329878 114330180 -29456275 + L2 LINE L2 2422 2742 -572 225 69 0 0 chr12 114330705 114330734 -29455721 - L2 LINE L2 -19 3294 3266 2107 236 82 21 chr12 114330828 114331387 -29455068 - MLT1E LTR MaLR 0 593 1 268 270 63 16 chr12 114331939 114332002 -29454453 + MER91A DNA MER1_type 1 66 -130 180 0 0 0 chr12 114332077 114332097 -29454358 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 545 264 27 20 chr12 114332671 114332819 -29453636 + MER5A DNA MER1_type 1 149 -40 2051 113 50 0 chr12 114333245 114333527 -29452928 + AluSg SINE Alu 1 296 -14 3098 147 78 4 chr12 114333548 114334051 -29452404 + L1PA16 LINE L1 5625 6164 -2 257 281 56 117 chr12 114334294 114334525 -29451930 - MLT1L LTR MaLR -364 251 35 590 300 47 12 chr12 114334714 114334884 -29451571 + MER5B DNA MER1_type 3 178 0 946 253 60 44 chr12 114334924 114335322 -29451133 - MLT1I LTR MaLR 0 446 3 1915 145 10 0 chr12 114335337 114335626 -29450829 + AluJb SINE Alu 1 292 -20 315 0 0 0 chr12 114335878 114335913 -29450542 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 130 0 0 chr12 114336353 114336399 -29450056 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 673 261 21 5 chr12 114337203 114337391 -29449064 + MIR SINE MIR 72 262 0 207 0 0 0 chr12 114337652 114337675 -29448780 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 199 204 23 0 chr12 114337719 114337763 -29448692 - L2 LINE L2 -86 3186 3142 2562 145 8 2 chr12 114337968 114338369 -29448086 - MER57A LTR ERV1 0 403 1 214 240 80 0 chr12 114338471 114338546 -29447909 - L2 LINE L2 -554 2760 2680 195 283 0 0 chr12 114339142 114339188 -29447267 - L2 LINE L2 -76 3237 3192 2258 226 28 30 chr12 114339267 114339803 -29446652 - MLT1H LTR MaLR -2 547 13 266 285 114 32 chr12 114340737 114340860 -29445595 - L2 LINE L2 -19 3253 3121 273 372 34 14 chr12 114341154 114341302 -29445153 + L2 LINE L2 2929 3079 -193 3940 188 11 16 chr12 114341462 114342285 -29444170 - L1MA5 LINE L1 -2 6298 5480 2640 136 12 25 chr12 114342411 114343167 -29443288 - L1M2 LINE L1 -680 6641 5891 * 12122 192 22 33 chr12 114343159 114345228 -29441227 - L1M2 LINE L1 -1710 5457 3368 3530 195 20 76 chr12 114345228 114346254 -29440201 - LTR5 LTR ERVK 0 969 1 12122 192 22 33 chr12 114346254 114349663 -29436792 - L1M2 LINE L1 -3799 3368 2 312 254 161 17 chr12 114349691 114349809 -29436646 + L2 LINE L2 3137 3271 -1 319 109 0 0 chr12 114350204 114350250 -29436205 - MADE1 DNA Mariner 0 80 35 1440 269 50 30 chr12 114350250 114351005 -29435450 + L2 LINE L2 2535 3312 -1 284 214 24 36 chr12 114353942 114353983 -29432472 + MIR3 SINE MIR 82 122 -86 2051 120 7 14 chr12 114353983 114354275 -29432180 - AluSg SINE Alu -20 290 1 284 214 24 36 chr12 114354275 114354317 -29432138 + MIR3 SINE MIR 122 164 -44 205 156 0 0 chr12 114354702 114354734 -29431721 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 3714 112 47 0 chr12 114355016 114355545 -29430910 - MER41A LTR ERV1 0 554 1 245 267 33 0 chr12 114355782 114355842 -29430613 - MARNA DNA Mariner -467 119 58 189 237 0 0 chr12 114356347 114356385 -29430070 + MIR SINE MIR 224 261 -1 2094 227 35 118 chr12 114356404 114357209 -29429246 - MER21B LTR ERV1 -125 738 1 1494 129 95 21 chr12 114357949 114358001 -29428454 - AluJo SINE Alu -24 288 241 5195 76 6 0 chr12 114358001 114358657 -29427798 + PABL_A LTR ERV1 1 660 0 1494 129 95 21 chr12 114358657 114358753 -29427702 - AluJo SINE Alu -71 241 154 302 0 26 0 chr12 114358753 114358791 -29427664 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1494 129 95 21 chr12 114358791 114358882 -29427573 - AluJo SINE Alu -158 154 30 229 333 32 16 chr12 114358896 114359019 -29427436 + L2 LINE L2 2934 3058 -214 809 272 171 23 chr12 114359333 114359710 -29426745 - L1ME4a LINE L1 -189 5932 5507 293 274 34 26 chr12 114359927 114360044 -29426411 - L1MEd LINE L1 -5346 773 656 338 250 24 55 chr12 114360330 114360494 -29425961 - L1MEd LINE L1 -5949 170 12 614 309 51 5 chr12 114360790 114361007 -29425448 - MIR SINE MIR -26 236 10 230 239 0 0 chr12 114361192 114361238 -29425217 + CT-rich Low_complexity Low_complexity 2 47 0 749 220 0 12 chr12 114361457 114361625 -29424830 - MER5B DNA MER1_type -6 172 7 963 195 11 0 chr12 114361724 114361898 -29424557 - MER5A DNA MER1_type -12 177 2 257 254 0 0 chr12 114362382 114362437 -29424018 - MIR SINE MIR -116 146 92 454 232 67 37 chr12 114362449 114362613 -29423842 - L2 LINE L2 -17 3296 3128 415 229 21 0 chr12 114362757 114362853 -29423602 - L2 LINE L2 -513 2801 2704 189 167 0 0 chr12 114363518 114363548 -29422907 + MIR SINE MIR 119 148 -114 231 288 0 0 chr12 114364699 114364765 -29421690 + L2 LINE L2 3207 3272 0 595 324 29 12 chr12 114365064 114365308 -29421147 + MIR SINE MIR 2 249 -13 585 296 92 17 chr12 114365636 114366060 -29420395 - LTR16C LTR ERVL -10 481 1 299 343 7 22 chr12 114366783 114366920 -29419535 + MIR SINE MIR 19 153 -55 879 171 0 62 chr12 114366921 114367097 -29419358 + FRAM SINE Alu 1 165 -1 943 134 11 16 chr12 114367164 114367350 -29419105 - Charlie5 DNA MER1_type -49 2563 2379 240 240 70 70 chr12 114367395 114367524 -29418931 + L3b LINE CR1 1327 1455 -128 * 506 271 79 39 chr12 114367518 114367721 -29418734 + MIR SINE MIR 35 245 -17 423 264 88 0 chr12 114367847 114367995 -29418460 - MER117 DNA MER1_type -36 161 1 210 91 0 0 chr12 114368086 114368119 -29418336 + (GA)n Simple_repeat Simple_repeat 2 34 0 513 285 152 44 chr12 114369015 114369555 -29416900 + L2 LINE L2 2714 3312 -1 482 284 102 8 chr12 114369556 114369792 -29416663 - MIR SINE MIR -2 260 3 2017 131 26 47 chr12 114370269 114370652 -29415803 - THE1C LTR MaLR 0 375 1 684 263 67 74 chr12 114371435 114371883 -29414572 - L1ME4a LINE L1 -1 6120 5676 378 0 0 0 chr12 114371900 114371942 -29414513 + (TG)n Simple_repeat Simple_repeat 1 42 0 1627 160 10 58 chr12 114371942 114372235 -29414220 - AluJb SINE Alu -33 279 1 624 283 28 28 chr12 114372399 114372611 -29413844 + MIR SINE MIR 43 254 -8 1176 279 58 13 chr12 114373529 114373923 -29412532 + LTR16C LTR ERVL 77 488 -3 303 348 59 12 chr12 114373927 114374249 -29412206 + L2 LINE L2 2468 2804 -510 261 263 44 148 chr12 114374346 114374414 -29412041 + L2 LINE L2 3018 3091 -181 2141 141 39 34 chr12 114374414 114374798 -29411657 - MLT1B LTR MaLR 0 390 5 261 263 44 148 chr12 114374798 114374999 -29411456 + L2 LINE L2 3091 3259 -13 2140 84 10 55 chr12 114375454 114375762 -29410693 - AluY SINE Alu -17 294 1 674 206 0 0 chr12 114376030 114376156 -29410299 + MER3 DNA MER1_type 5 130 -79 204 67 0 0 chr12 114376156 114376186 -29410269 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 204 246 138 0 chr12 114376236 114376301 -29410154 + MIR3 SINE MIR 95 168 -40 356 286 154 57 chr12 114376306 114376656 -29409799 - MLT1J1 LTR MaLR -8 438 55 1220 278 126 12 chr12 114376795 114377288 -29409167 - MLT1H LTR MaLR 0 549 1 213 136 68 0 chr12 114378514 114378558 -29407897 - MIR SINE MIR -109 153 107 555 305 118 33 chr12 114379040 114379345 -29407110 - LTR16C LTR ERVL 0 491 161 321 228 22 33 chr12 114380165 114380257 -29406198 - MER5A DNA MER1_type -1 188 98 23 0 0 0 chr12 114380476 114380499 -29405956 + AT_rich Low_complexity Low_complexity 1 23 0 453 246 128 17 chr12 114380767 114380946 -29405509 + MIR SINE MIR 21 219 -43 512 293 47 26 chr12 114381405 114381637 -29404818 - MIR SINE MIR -13 249 13 412 236 34 27 chr12 114381957 114382105 -29404350 + MIR SINE MIR 84 232 -30 495 270 6 2 chr12 114382281 114382476 -29403979 + MIR SINE MIR 34 262 0 458 222 79 0 chr12 114383085 114383211 -29403244 + MIR SINE MIR 57 192 -70 1063 224 37 11 chr12 114383228 114383496 -29402959 + MER33 DNA MER1_type 1 275 -49 2171 107 46 0 chr12 114383496 114383823 -29402632 + L1PA13 LINE L1 5818 6159 -4 688 149 72 52 chr12 114383853 114384047 -29402408 + Charlie5 DNA MER1_type 2417 2614 0 677 286 48 16 chr12 114384181 114384433 -29402022 - MIR SINE MIR 0 262 3 1502 130 9 130 chr12 114385067 114385217 -29401238 - AluJo SINE Alu -35 277 183 2216 129 0 0 chr12 114385217 114385527 -29400928 - AluSg SINE Alu 0 310 1 1502 130 9 130 chr12 114385527 114385555 -29400900 - AluJo SINE Alu -129 183 1 741 154 22 44 chr12 114385555 114385691 -29400764 - FLAM_C SINE Alu 0 133 1 237 207 35 0 chr12 114387087 114387145 -29399310 - MIR SINE MIR -102 160 101 609 237 87 34 chr12 114387210 114387417 -29399038 + MER58A DNA MER1_type 6 223 -1 210 231 0 0 chr12 114387511 114387550 -29398905 + polypurine Low_complexity Low_complexity 3 41 0 317 286 41 0 chr12 114388110 114388208 -29398247 + MIR SINE MIR 91 192 -70 446 227 136 0 chr12 114388358 114388468 -29397987 + MLT1J LTR MaLR 40 164 -347 843 223 147 8 chr12 114388811 114389049 -29397406 + MLT1J LTR MaLR 231 501 -10 304 233 43 35 chr12 114389053 114389169 -29397286 + MIR SINE MIR 75 191 -71 253 198 132 33 chr12 114389216 114389307 -29397148 - MER5A DNA MER1_type -48 141 42 259 196 0 18 chr12 114389771 114389827 -29396628 + MIR SINE MIR 81 135 -73 * 594 226 44 0 chr12 114389825 114389984 -29396471 - MIR SINE MIR -29 233 68 180 233 0 0 chr12 114390949 114390992 -29395463 - MIR3 SINE MIR -48 160 118 205 130 0 37 chr12 114391354 114391408 -29395047 + (GA)n Simple_repeat Simple_repeat 1 52 0 811 185 25 0 chr12 114392053 114392337 -29394118 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 547 177 23 17 chr12 114392350 114392525 -29393930 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 563 132 23 16 chr12 114392580 114392709 -29393746 + (TCCA)n Simple_repeat Simple_repeat 4 133 0 2436 93 0 13 chr12 114392722 114393035 -29393420 - AluSc SINE Alu 0 309 1 316 223 10 58 chr12 114393041 114393144 -29393311 - HAL1 LINE L1 0 2507 2410 748 322 115 14 chr12 114393161 114393811 -29392644 - L2 LINE L2 -227 3086 2377 707 301 0 5 chr12 114393823 114394036 -29392419 + MIR SINE MIR 38 249 -13 780 63 31 0 chr12 114394089 114394216 -29392239 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 335 311 55 18 chr12 114394543 114394707 -29391748 - MIR SINE MIR -47 215 46 459 205 47 31 chr12 114394749 114394876 -29391579 + L1ME LINE L1 5648 5776 -345 192 152 0 0 chr12 114394907 114394940 -29391515 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1660 176 24 7 chr12 114395052 114395341 -29391114 - AluJo SINE Alu -18 294 1 823 161 23 0 chr12 114395341 114395471 -29390984 - AluJo SINE Alu -177 135 3 822 277 121 45 chr12 114396431 114396854 -29389601 + MLT1K LTR MaLR 134 588 0 259 211 21 0 chr12 114396936 114397031 -29389424 + (CAATT)n Simple_repeat Simple_repeat 4 100 0 351 0 0 0 chr12 114397208 114397247 -29389208 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 467 284 135 14 chr12 114397261 114397483 -29388972 + MIR SINE MIR 2 250 -12 226 184 0 0 chr12 114397450 114397488 -29388967 + L2 LINE L2 3222 3259 -13 * 301 295 86 0 chr12 114398025 114398130 -29388325 - MIR SINE MIR -62 146 33 3720 93 5 53 chr12 114398305 114398908 -29387547 - L1P LINE L1 -746 5400 4827 589 256 18 12 chr12 114399021 114399185 -29387270 - Charlie8 DNA MER1_type -2141 276 112 263 328 205 0 chr12 114400114 114400236 -29386219 - MIR SINE MIR -103 159 13 195 232 0 0 chr12 114400299 114400355 -29386100 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 272 282 63 28 chr12 114400366 114400508 -29385947 - MIR SINE MIR -49 213 67 428 307 93 10 chr12 114401010 114401215 -29385240 + MIR SINE MIR 4 225 -37 834 219 63 96 chr12 114401645 114402044 -29384411 + MLT1H1 LTR MaLR 24 406 -149 503 298 140 4 chr12 114402378 114402606 -29383849 + HAL1 LINE L1 2245 2503 -4 1707 162 3 24 chr12 114402630 114402963 -29383492 - AluJo SINE Alu 0 327 1 190 337 82 10 chr12 114403048 114403146 -29383309 + L2 LINE L2 3162 3266 -6 1185 199 131 23 chr12 114403232 114403584 -29382871 + MER113 DNA MER1_type? 37 426 -95 500 219 114 52 chr12 114405784 114406120 -29380335 + MLT1H LTR MaLR 19 407 -142 479 248 34 27 chr12 114406359 114406508 -29379947 + MIR SINE MIR 111 260 -2 309 51 0 0 chr12 114406510 114406549 -29379906 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 657 202 16 71 chr12 114407251 114407434 -29379021 + MER104 DNA Tc2 8 180 0 256 231 46 0 chr12 114409011 114409076 -29377379 - L2 LINE L2 -10 3303 3236 267 79 0 0 chr12 114409229 114409267 -29377188 + (CA)n Simple_repeat Simple_repeat 2 39 0 1296 278 53 64 chr12 114409320 114409412 -29377043 - MLT1K LTR MaLR 0 588 496 360 206 27 0 chr12 114409412 114409485 -29376970 - MER116 DNA Mariner -4 76 2 1296 278 53 64 chr12 114409485 114409939 -29376516 - MLT1K LTR MaLR -92 496 48 239 141 11 130 chr12 114409967 114410059 -29376396 + L1ME4a LINE L1 6022 6102 -19 224 274 46 92 chr12 114410538 114410691 -29375764 + MIR SINE MIR 86 231 -31 439 333 68 13 chr12 114410735 114410972 -29375483 + MIR SINE MIR 13 262 0 545 180 16 0 chr12 114411279 114411401 -29375054 + (TCCA)n Simple_repeat Simple_repeat 1 124 0 349 305 51 8 chr12 114411404 114411522 -29374933 - L2 LINE L2 0 3272 3150 328 353 13 0 chr12 114412042 114412195 -29374260 - MIR SINE MIR -65 197 43 538 282 122 13 chr12 114413404 114413723 -29372732 + L1MC3 LINE L1 5464 5814 -307 1009 284 95 50 chr12 114414826 114415011 -29371444 + L1M4 LINE L1 3617 3792 -2354 2777 119 44 0 chr12 114415011 114415421 -29371034 + MSTA LTR MaLR 1 428 0 1009 284 95 50 chr12 114415421 114415457 -29370998 + L1M4 LINE L1 3792 3825 -2321 2415 69 3 22 chr12 114415457 114415774 -29370681 + AluY SINE Alu 1 311 0 1009 284 95 50 chr12 114415774 114416470 -29369985 + L1M4 LINE L1 3825 4576 -1570 362 80 0 0 chr12 114416482 114416532 -29369923 - L1PA16 LINE L1 -16 6150 6101 267 252 57 31 chr12 114416571 114416730 -29369725 - L1ME4a LINE L1 -152 5969 5807 330 280 40 60 chr12 114416866 114417016 -29369439 + L2 LINE L2 33 179 -3135 251 211 0 35 chr12 114417128 114417185 -29369270 + MER4-int LTR ERV1 1112 1166 -5432 390 224 19 28 chr12 114417223 114417330 -29369125 + L2 LINE L2 3208 3313 0 314 260 10 10 chr12 114417339 114417439 -29369016 - L1ME4a LINE L1 -401 5720 5621 5907 161 33 16 chr12 114417594 114418731 -29367724 + L1MC3 LINE L1 5929 7085 -700 240 271 0 14 chr12 114418731 114418801 -29367654 + MLT1F1 LTR MaLR 24 92 -475 2643 160 58 9 chr12 114418801 114419337 -29367118 + L1MC3 LINE L1 7222 7783 -2 281 318 124 8 chr12 114419601 114419730 -29366725 - MIR SINE MIR -115 147 4 3903 122 25 28 chr12 114420226 114420872 -29365583 - LTR9B LTR ERV1 0 644 1 293 275 17 0 chr12 114420940 114421044 -29365411 + MIR SINE MIR 48 146 -62 319 328 83 0 chr12 114421129 114421297 -29365158 - MIR SINE MIR -52 210 31 315 316 5 21 chr12 114422032 114422148 -29364307 + CT-rich Low_complexity Low_complexity 1 114 0 305 267 76 23 chr12 114422492 114422623 -29363832 - L1ME4a LINE L1 -260 5861 5724 854 150 0 0 chr12 114422879 114423012 -29363443 - FLAM_A SINE Alu 0 133 1 362 322 58 29 chr12 114423952 114424126 -29362329 - MIR SINE MIR -78 184 6 1000 211 47 0 chr12 114424270 114424483 -29361972 + MER58A DNA MER1_type 2 224 0 217 296 12 12 chr12 114424668 114424749 -29361706 - MIR SINE MIR -89 119 39 2074 139 7 7 chr12 114425595 114425905 -29360550 - AluJb SINE Alu -2 310 1 403 245 76 49 chr12 114425932 114426076 -29360379 + MIR SINE MIR 7 153 -66 216 0 0 0 chr12 114426099 114426123 -29360332 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 337 246 0 85 chr12 114426270 114426400 -29360055 - MLT1H LTR MaLR -336 213 95 183 80 0 0 chr12 114427327 114427352 -29359103 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1016 302 75 9 chr12 114427518 114427955 -29358500 + MLT1L LTR MaLR 142 607 -8 237 344 18 29 chr12 114427966 114428103 -29358352 - MIR SINE MIR -92 116 20 186 326 10 10 chr12 114428390 114428488 -29357967 + MIR SINE MIR 36 133 -75 250 271 23 85 chr12 114428615 114428792 -29357663 + MIR3 SINE MIR 41 206 -2 648 148 19 31 chr12 114428993 114429155 -29357300 + Charlie5 DNA MER1_type 2395 2554 -58 1247 206 4 12 chr12 114429155 114429412 -29357043 + L1PA16 LINE L1 5912 6166 0 28 29 0 0 chr12 114429427 114429462 -29356993 + AT_rich Low_complexity Low_complexity 1 35 0 2150 100 3 36 chr12 114429572 114429873 -29356582 - AluSg SINE Alu -19 291 1 1694 150 0 85 chr12 114429965 114430306 -29356149 + AluSx SINE Alu 1 312 0 3320 139 14 18 chr12 114430417 114430987 -29355468 - L1MB3 LINE L1 -2 6181 5614 1069 161 29 49 chr12 114430987 114431192 -29355263 - MER20 DNA MER1_type -18 201 1 671 210 42 12 chr12 114431197 114431364 -29355091 - MIR SINE MIR -65 197 26 219 36 0 0 chr12 114431665 114431693 -29354762 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2179 102 0 0 chr12 114431697 114431972 -29354483 - AluSg SINE Alu -35 275 1 327 169 0 0 chr12 114432206 114432277 -29354178 + (TTCA)n Simple_repeat Simple_repeat 1 71 0 570 264 74 30 chr12 114432318 114432549 -29353906 + MIR SINE MIR 10 250 -12 351 60 0 0 chr12 114432587 114432637 -29353818 + (TG)n Simple_repeat Simple_repeat 2 51 0 506 259 0 34 chr12 114432972 114433119 -29353336 + MER5B DNA MER1_type 1 142 -36 2104 124 7 3 chr12 114433119 114433409 -29353046 + AluSx SINE Alu 1 291 -21 189 302 16 0 chr12 114433477 114433540 -29352915 + L2 LINE L2 3194 3257 -15 696 232 205 44 chr12 114433807 114434100 -29352355 - LTR16C LTR ERVL 0 491 152 582 261 60 33 chr12 114434966 114435191 -29351264 + MIR SINE MIR 6 249 -13 443 301 122 10 chr12 114435287 114435483 -29350972 + MIR SINE MIR 18 235 -27 498 298 15 0 chr12 114435875 114436006 -29350449 + MLT1H1 LTR MaLR 41 173 -382 877 201 24 30 chr12 114436011 114436180 -29350275 + FAM SINE Alu 4 171 -4 525 205 0 0 chr12 114436174 114436288 -29350167 + GA-rich Low_complexity Low_complexity 1 114 0 358 176 30 99 chr12 114436403 114436534 -29349921 - MER103 DNA DNA -13 153 32 339 25 0 0 chr12 114437072 114437112 -29349343 + (TG)n Simple_repeat Simple_repeat 2 41 0 588 264 155 0 chr12 114437659 114437814 -29348641 - MER5A DNA MER1_type 0 189 11 570 207 66 13 chr12 114437835 114437994 -29348461 + MER3 DNA MER1_type 5 123 -86 214 242 10 20 chr12 114438110 114438209 -29348246 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 1040 92 0 46 chr12 114438351 114438524 -29347931 - L1MA9 LINE L1 0 6312 6148 2588 167 26 14 chr12 114438524 114439008 -29347447 - LTR45B LTR ERV1 0 603 3 5347 129 6 30 chr12 114439009 114439888 -29346567 - L1MA9 LINE L1 -162 6150 5293 523 96 24 0 chr12 114439888 114439971 -29346484 + MER3 DNA MER1_type 125 209 0 355 298 39 0 chr12 114439978 114440082 -29346373 + L2 LINE L2 3155 3262 -10 451 262 91 91 chr12 114440132 114440425 -29346030 - MLT1K LTR MaLR -7 581 286 4589 168 15 21 chr12 114440425 114440716 -29345739 - MER54B LTR ERVL 0 793 502 225 0 0 0 chr12 114440716 114440741 -29345714 + (TC)n Simple_repeat Simple_repeat 2 26 0 4589 168 15 21 chr12 114440741 114441247 -29345208 - MER54B LTR ERVL -291 502 1 451 262 91 91 chr12 114441247 114441380 -29345075 - MLT1K LTR MaLR -301 287 155 267 241 83 41 chr12 114441948 114442093 -29344362 - MER113 DNA MER1_type? -354 167 17 260 200 0 62 chr12 114442297 114442387 -29344068 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 255 210 32 16 chr12 114442637 114442699 -29343756 - MER96B DNA MER1_type? -6 169 107 326 308 145 14 chr12 114444778 114445129 -29341326 - L1ME4a LINE L1 -21 6100 5704 1893 173 49 21 chr12 114445739 114445954 -29340501 - MER89 LTR ERV1 0 559 351 2183 142 83 34 chr12 114445954 114446363 -29340092 + MSTB1 LTR MaLR 4 432 0 1893 173 49 21 chr12 114446363 114446591 -29339864 - MER89 LTR ERV1 -208 351 4 254 165 24 63 chr12 114447996 114448123 -29338332 + GA-rich Low_complexity Low_complexity 5 126 0 478 107 18 65 chr12 114448131 114448202 -29338253 + (TAGA)n Simple_repeat Simple_repeat 2 75 -86 2002 134 0 0 chr12 114448202 114448492 -29337963 + AluSx SINE Alu 1 290 -22 478 107 18 65 chr12 114448492 114448588 -29337867 + (TAGA)n Simple_repeat Simple_repeat 75 161 0 372 319 45 10 chr12 114449054 114449321 -29337134 - L1ME4a LINE L1 -841 5518 5255 375 316 29 22 chr12 114450178 114450314 -29336141 - MER5A DNA MER1_type -22 167 31 485 253 281 4 chr12 114450372 114450625 -29335830 - MLT1H LTR MaLR -226 323 1 416 267 15 89 chr12 114451131 114451266 -29335189 - MER5A DNA MER1_type -16 167 38 198 128 0 0 chr12 114451431 114451470 -29334985 + (T)n Simple_repeat Simple_repeat 1 39 0 456 299 54 11 chr12 114451556 114451740 -29334715 + MIR SINE MIR 57 248 -14 1117 273 76 58 chr12 114452144 114452683 -29333772 + MLT1H LTR MaLR 1 549 0 472 309 38 39 chr12 114452740 114452944 -29333511 - MIR SINE MIR -22 240 34 270 262 56 20 chr12 114452976 114453126 -29333329 + L2 LINE L2 2763 3032 -240 247 319 21 11 chr12 114453520 114453614 -29332841 - MIR SINE MIR -47 215 121 307 215 0 0 chr12 114454342 114454407 -29332048 - MER33 DNA MER1_type -2 361 297 3361 113 18 2 chr12 114454564 114455076 -29331379 - L1PA14 LINE L1 -4 6157 5638 2259 68 0 10 chr12 114455081 114455376 -29331079 - AluY SINE Alu -19 292 1 918 185 64 79 chr12 114455379 114455644 -29330811 - MER33 DNA MER1_type -58 266 6 295 332 136 19 chr12 114455649 114455863 -29330592 + MIR SINE MIR 16 254 -8 284 312 51 38 chr12 114455891 114456048 -29330407 - MIR SINE MIR 0 262 104 777 212 117 22 chr12 114456127 114456349 -29330106 + MIR SINE MIR 8 250 -12 188 295 167 0 chr12 114456647 114456725 -29329730 + L2 LINE L2 3161 3251 -21 1780 230 115 13 chr12 114456871 114457418 -29329037 - L1ME2 LINE L1 -13 6151 5549 188 225 0 0 chr12 114457424 114457464 -29328991 + MIR SINE MIR 111 150 -112 1045 224 32 6 chr12 114458192 114458441 -29328014 - L1MB1 LINE L1 -3 6165 5927 245 86 0 0 chr12 114458467 114458502 -29327953 - L1PB1 LINE L1 -1 6150 6116 * 600 81 1 0 chr12 114458481 114458643 -29327812 + L1P5 LINE L1 5505 5791 -360 334 356 0 0 chr12 114458644 114458734 -29327721 - L1MC4 LINE L1 -1339 6703 6614 * 341 197 0 42 chr12 114458671 114458742 -29327713 + L1MCa LINE L1 1996 2063 -4363 227 203 0 0 chr12 114458770 114458829 -29327626 - L1MC4 LINE L1 -1340 6702 6644 1474 84 19 9 chr12 114458836 114459049 -29327406 + L1PB1 LINE L1 5879 6093 -58 201 159 0 68 chr12 114459276 114459320 -29327135 + MIR SINE MIR 117 157 -105 1131 216 63 150 chr12 114459327 114459555 -29326900 + MLT1J LTR MaLR 1 247 -264 497 48 0 0 chr12 114459555 114459617 -29326838 - AluY SINE Alu -15 296 235 1131 216 63 150 chr12 114459617 114459886 -29326569 + MLT1J LTR MaLR 247 510 -1 219 292 0 0 chr12 114459912 114459977 -29326478 + MIR SINE MIR 195 259 -3 381 22 0 0 chr12 114460095 114460141 -29326314 + (TG)n Simple_repeat Simple_repeat 2 47 0 310 246 70 58 chr12 114460669 114460823 -29325632 - MIR SINE MIR -63 145 2 363 321 58 7 chr12 114461439 114461576 -29324879 + MIR SINE MIR 111 254 -8 253 259 0 0 chr12 114462410 114462447 -29324008 + MIR3 SINE MIR 108 144 -64 447 252 7 59 chr12 114462447 114462582 -29323873 + MIR3 SINE MIR 4 131 -77 642 262 139 27 chr12 114462746 114463078 -29323377 - MLT1L LTR MaLR -92 523 155 451 291 8 16 chr12 114463367 114463494 -29322961 + L2 LINE L2 3182 3307 -6 197 339 102 34 chr12 114463770 114463888 -29322567 - MIR SINE MIR -63 145 20 537 263 22 27 chr12 114464049 114464230 -29322225 + MLT1I LTR MaLR 12 223 -241 769 141 16 8 chr12 114464279 114464400 -29322055 + FLAM_C SINE Alu 2 123 -20 369 271 33 25 chr12 114464420 114464542 -29321913 + MLT1I LTR MaLR 251 373 -36 246 292 42 0 chr12 114464581 114464653 -29321802 - MIR SINE MIR -28 234 160 357 250 12 0 chr12 114464683 114464763 -29321692 + L2 LINE L2 3229 3309 -4 181 100 67 0 chr12 114464827 114464857 -29321598 - L2 LINE L2 -31 3282 3251 904 273 89 40 chr12 114464872 114465220 -29321235 - L2 LINE L2 -6 3307 2943 1640 145 123 48 chr12 114465257 114465358 -29321097 + L1MA7 LINE L1 5887 5979 -312 186 43 0 0 chr12 114465358 114465381 -29321074 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1640 145 123 48 chr12 114465381 114465501 -29320954 + L1MA7 LINE L1 5979 6089 -202 1556 193 7 3 chr12 114465501 114465801 -29320654 - AluJo SINE Alu -11 301 1 1640 145 123 48 chr12 114465801 114465951 -29320504 + L1MA7 LINE L1 6089 6287 -4 260 299 0 0 chr12 114465980 114466047 -29320408 - MIR SINE MIR -187 75 9 1514 191 13 26 chr12 114466322 114466631 -29319824 + AluJo SINE Alu 1 305 -7 399 242 121 0 chr12 114467316 114467440 -29319015 + MIR SINE MIR 34 172 -90 362 257 0 0 chr12 114467660 114467730 -29318725 - L2 LINE L2 -4 3309 3240 548 95 51 0 chr12 114467757 114467894 -29318561 + (TA)n Simple_repeat Simple_repeat 2 145 0 405 280 71 62 chr12 114469343 114469568 -29316887 + MIR SINE MIR 36 262 0 428 271 146 20 chr12 114469938 114470089 -29316366 + MIR SINE MIR 34 203 -59 255 275 51 72 chr12 114470129 114470267 -29316188 - L2 LINE L2 -19 3294 3160 553 259 59 0 chr12 114470478 114470613 -29315842 - MIR SINE MIR -72 190 48 325 252 252 0 chr12 114470724 114470839 -29315616 - L2 LINE L2 -10 3262 3119 768 273 0 48 chr12 114471032 114471263 -29315192 + LTR16B LTR ERVL 232 451 -13 283 214 0 145 chr12 114471466 114471597 -29314858 + MIR SINE MIR 117 228 -34 1230 222 80 23 chr12 114472169 114472534 -29313921 - L1ME3A LINE L1 -6 6164 5780 240 292 15 0 chr12 114472542 114472607 -29313848 + LTR16B LTR ERVL 392 457 -7 342 264 147 0 chr12 114472617 114472746 -29313709 - L1ME3A LINE L1 -377 5793 5646 1036 174 19 39 chr12 114472761 114472968 -29313487 - AluJo SINE Alu -24 288 86 245 303 81 10 chr12 114473286 114473385 -29313070 + MIR3 SINE MIR 85 190 -18 334 270 208 25 chr12 114473421 114473580 -29312875 - MIR SINE MIR -1 261 74 336 111 0 0 chr12 114473843 114473897 -29312558 + (TA)n Simple_repeat Simple_repeat 1 54 0 644 300 12 19 chr12 114473913 114474170 -29312285 - L1ME3A LINE L1 -231 5939 5685 2096 186 3 8 chr12 114474217 114474583 -29311872 + MLT1A1 LTR MaLR 2 365 0 412 269 37 19 chr12 114474630 114474738 -29311717 - L2 LINE L2 -1 3271 3162 697 278 41 37 chr12 114475163 114475408 -29311047 - MIR SINE MIR -1 261 16 338 273 81 25 chr12 114476199 114476325 -29310130 - MIR SINE MIR -41 167 68 372 188 260 45 chr12 114476325 114476479 -29309976 + MER53 DNA DNA 1 187 -2 338 273 81 25 chr12 114476479 114476508 -29309947 - MIR SINE MIR -140 68 42 647 264 18 6 chr12 114476627 114476790 -29309665 - MIR SINE MIR -68 194 30 231 103 0 0 chr12 114476798 114476837 -29309618 + (A)n Simple_repeat Simple_repeat 1 39 0 331 242 85 24 chr12 114476838 114476978 -29309477 - L1ME3A LINE L1 -6 6156 6007 421 216 0 11 chr12 114477030 114477118 -29309337 - MIR SINE MIR -109 153 67 233 313 30 20 chr12 114477212 114477311 -29309144 - L2 LINE L2 -20 3293 3194 * 266 288 78 33 chr12 114477293 114477446 -29309009 - MIR SINE MIR -12 250 91 23 54 0 0 chr12 114477755 114477792 -29308663 + GC_rich Low_complexity Low_complexity 1 37 0 414 0 0 0 chr12 114478758 114478804 -29307651 + (TG)n Simple_repeat Simple_repeat 2 47 0 527 267 72 28 chr12 114479456 114479636 -29306819 + MIR3 SINE MIR 20 207 -1 344 306 147 0 chr12 114479679 114479864 -29306591 + MIR SINE MIR 34 244 -18 222 118 0 0 chr12 114480319 114480353 -29306102 + (TG)n Simple_repeat Simple_repeat 1 34 0 207 351 0 0 chr12 114480612 114480689 -29305766 + (TG)n Simple_repeat Simple_repeat 1 77 0 201 287 11 11 chr12 114480734 114480821 -29305634 + (TG)n Simple_repeat Simple_repeat 1 87 0 351 321 0 6 chr12 114481213 114481375 -29305080 + (TG)n Simple_repeat Simple_repeat 2 162 0 299 305 12 12 chr12 114481416 114481580 -29304875 + (TG)n Simple_repeat Simple_repeat 2 165 0 628 297 0 35 chr12 114482509 114482711 -29303744 + MLT1H LTR MaLR 29 223 -326 385 282 69 19 chr12 114483054 114483245 -29303210 - MIR SINE MIR 0 262 2 456 99 0 0 chr12 114483398 114483469 -29302986 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 290 225 65 138 chr12 114483472 114483610 -29302845 - L2 LINE L2 -4 3268 3141 265 307 20 18 chr12 114483616 114483779 -29302676 + MIR SINE MIR 21 248 -14 198 143 0 0 chr12 114483785 114483820 -29302635 + (TCC)n Simple_repeat Simple_repeat 3 37 0 547 248 9 9 chr12 114483895 114484008 -29302447 + MER81 DNA DNA 1 113 -1 1397 167 5 0 chr12 114484052 114484274 -29302181 + MER58A DNA MER1_type 2 224 0 255 276 284 22 chr12 114484558 114484692 -29301763 + MIR3 SINE MIR 35 203 -5 551 308 79 5 chr12 114484808 114485022 -29301433 - MIR SINE MIR -20 242 13 207 232 18 71 chr12 114486156 114486212 -29300243 + L2 LINE L2 3252 3304 -9 685 298 32 11 chr12 114486657 114486845 -29299610 + MIR SINE MIR 16 207 -55 234 200 0 120 chr12 114487090 114487165 -29299290 - L2 LINE L2 0 3272 3207 290 185 174 33 chr12 114487242 114487334 -29299121 + L2 LINE L2 3209 3313 0 966 278 20 4 chr12 114487785 114488040 -29298415 + MIR SINE MIR 4 262 0 404 320 44 2 chr12 114488157 114488358 -29298097 + MIR SINE MIR 10 222 -32 581 283 152 0 chr12 114488410 114488608 -29297847 + MIR SINE MIR 33 260 -2 222 292 0 0 chr12 114489148 114489196 -29297259 - MIR SINE MIR -134 74 27 990 195 20 20 chr12 114489327 114489522 -29296933 - AluJo SINE Alu 0 312 118 762 189 0 0 chr12 114489559 114489681 -29296774 - FLAM_A SINE Alu -10 123 2 1488 193 181 6 chr12 114489685 114490027 -29296428 - MLT1D LTR MaLR -53 452 51 339 214 15 74 chr12 114490743 114490870 -29295585 + MIR SINE MIR 36 156 -66 381 196 105 96 chr12 114490873 114491082 -29295373 - MLT1K LTR MaLR 0 588 378 1827 167 10 10 chr12 114491096 114491396 -29295059 - AluJo SINE Alu -12 300 1 288 355 19 0 chr12 114491801 114491908 -29294547 + MIR SINE MIR 153 261 -1 428 268 35 66 chr12 114492165 114492363 -29294092 - MER102a DNA MER1_type -4 326 135 390 255 83 32 chr12 114492809 114492966 -29293489 + MIR SINE MIR 50 214 -48 531 250 101 24 chr12 114493037 114493245 -29293210 - MIR SINE MIR -19 243 20 313 260 0 0 chr12 114493330 114493407 -29293048 + MIR SINE MIR 55 131 -77 449 304 61 75 chr12 114493409 114493755 -29292700 + L2 LINE L2 2896 3236 -36 1113 282 60 2 chr12 114493805 114494220 -29292235 + L1ME3A LINE L1 5524 5962 -208 245 200 73 80 chr12 114494309 114494459 -29291996 + L1ME3A LINE L1 6006 6154 -16 300 300 252 36 chr12 114495248 114495316 -29291139 - L2 LINE L2 -3 3269 3217 521 209 27 9 chr12 114495316 114495426 -29291029 - MER81 DNA DNA -1 113 2 300 300 252 36 chr12 114495426 114495607 -29290848 - L2 LINE L2 -55 3217 2966 230 380 19 0 chr12 114495841 114495882 -29290573 + L2 LINE L2 2421 2460 -854 1747 170 76 7 chr12 114495882 114496171 -29290284 + AluJo SINE Alu 4 312 0 230 380 19 0 chr12 114496171 114496237 -29290218 + L2 LINE L2 2460 2530 -784 * 477 264 54 54 chr12 114496235 114496365 -29290090 + L2 LINE L2 3075 3207 -106 1017 158 40 79 chr12 114496365 114496593 -29289862 - MER20 DNA MER1_type 0 219 1 477 264 54 54 chr12 114496593 114496701 -29289754 + L2 LINE L2 3206 3313 0 210 297 93 51 chr12 114496874 114496992 -29289463 - MIR SINE MIR -60 148 26 705 248 61 19 chr12 114497016 114497230 -29289225 - MIR SINE MIR 0 262 40 190 107 0 0 chr12 114497816 114497844 -29288611 - MIR SINE MIR -118 144 117 283 192 346 0 chr12 114498009 114498087 -29288368 - L2 LINE L2 -12 3301 3197 615 267 220 0 chr12 114498114 114498305 -29288150 - MIR SINE MIR -23 239 7 851 240 87 25 chr12 114498316 114498558 -29287897 - MIR SINE MIR 0 262 6 1089 149 17 85 chr12 114499453 114499688 -29286767 - MER20 DNA MER1_type 0 219 1 389 275 83 0 chr12 114499817 114499926 -29286529 - MIR3 SINE MIR -54 154 37 425 229 57 79 chr12 114501042 114501101 -29285354 + MIR SINE MIR 86 145 -117 2152 102 3 18 chr12 114501101 114501414 -29285041 + AluSx SINE Alu 1 309 0 425 229 57 79 chr12 114501414 114501493 -29284962 + MIR SINE MIR 145 222 -40 909 279 83 18 chr12 114501806 114502201 -29284254 - LTR33 LTR ERVL -91 430 10 2555 188 47 6 chr12 114502431 114502916 -29283539 - MLT1D LTR MaLR 0 505 1 463 255 186 0 chr12 114503324 114503469 -29282986 + MIR3 SINE MIR 36 207 -1 596 122 41 157 chr12 114503608 114503780 -29282675 - MLT1B LTR MaLR -85 305 154 741 221 6 0 chr12 114504197 114504355 -29282100 - MLT1B LTR MaLR -230 160 2 310 300 122 1 chr12 114504408 114504559 -29281896 - MIR SINE MIR -60 202 36 749 220 5 80 chr12 114504640 114504840 -29281615 + MER5A DNA MER1_type 5 189 0 740 236 40 6 chr12 114505202 114505376 -29281079 + MIR SINE MIR 31 210 -52 1381 114 0 0 chr12 114505382 114505586 -29280869 + AluSg/x SINE Alu 127 330 0 321 250 170 10 chr12 114505683 114505783 -29280672 + L2 LINE L2 3193 3308 -5 254 208 0 0 chr12 114505966 114506014 -29280441 + L2 LINE L2 3225 3272 0 248 318 45 0 chr12 114506070 114506158 -29280297 - MIR SINE MIR -96 166 75 891 202 6 33 chr12 114506238 114506421 -29280034 - MER45A DNA AcHobo 0 178 1 202 273 44 32 chr12 114506421 114506524 -29279931 - MIR SINE MIR -56 152 47 661 179 0 0 chr12 114507099 114507205 -29279250 - FRAM SINE Alu -9 167 62 393 316 23 15 chr12 114507428 114507561 -29278894 - MIR SINE MIR -108 154 21 2727 100 112 9 chr12 114507933 114508353 -29278102 - MER4C LTR ERV1 -2 463 1 506 239 26 0 chr12 114508536 114508649 -29277806 + MER20 DNA MER1_type 104 219 0 185 333 83 0 chr12 114508724 114508784 -29277671 + MIR SINE MIR 38 102 -106 554 295 75 4 chr12 114509254 114509495 -29276960 + MIR SINE MIR 1 258 -4 235 255 10 78 chr12 114509558 114509660 -29276795 + MIR3 SINE MIR 93 187 -21 539 296 20 20 chr12 114510029 114510225 -29276230 + MIR3 SINE MIR 11 206 -2 206 260 42 73 chr12 114510236 114510332 -29276123 - MIR SINE MIR -2 260 168 * 253 270 0 108 chr12 114510295 114510406 -29276049 + MIR3 SINE MIR 93 191 -17 398 154 0 0 chr12 114510538 114510603 -29275852 - MER58 DNA MER1_type -1 2419 2355 438 307 30 12 chr12 114510858 114511024 -29275431 + L2 LINE L2 2921 3089 -224 295 301 142 0 chr12 114511029 114511142 -29275313 + MER112 DNA MER1_type 5 133 -127 3131 121 82 2 chr12 114511685 114512197 -29274258 - L1MC1 LINE L1 0 6333 5781 461 100 0 0 chr12 114512199 114512269 -29274186 - L1MC1 LINE L1 -674 5659 5590 955 200 100 21 chr12 114512937 114513177 -29273278 + MIR SINE MIR 4 262 0 448 280 68 8 chr12 114513183 114513315 -29273140 - MIR SINE MIR -45 217 78 23 0 0 0 chr12 114513495 114513518 -29272937 + AT_rich Low_complexity Low_complexity 1 23 0 397 223 129 22 chr12 114514334 114514473 -29271982 + MIR SINE MIR 29 182 -80 377 257 26 44 chr12 114514493 114514606 -29271849 + L1ME LINE L1 5669 5779 -342 906 286 89 7 chr12 114514729 114515009 -29271446 - LTR16C LTR ERVL -96 395 93 357 283 40 101 chr12 114515057 114515333 -29271122 + L1ME LINE L1 5451 5709 -453 427 293 17 0 chr12 114515516 114515632 -29270823 - MIR SINE MIR -56 206 89 194 238 155 12 chr12 114515615 114515699 -29270756 + MIR SINE MIR 153 248 -14 * 262 177 114 51 chr12 114516273 114516352 -29270103 - MIR3 SINE MIR -18 190 107 308 329 28 28 chr12 114516395 114516538 -29269917 - MIR SINE MIR -62 200 58 237 336 21 64 chr12 114516642 114516782 -29269673 + MIR SINE MIR 129 262 0 265 220 11 22 chr12 114516815 114516906 -29269549 + GA-rich Low_complexity Low_complexity 1 90 0 436 240 84 84 chr12 114517685 114517910 -29268545 - MIR SINE MIR -18 244 20 201 290 36 115 chr12 114518101 114518353 -29268102 + L2 LINE L2 2867 3098 -174 642 258 100 17 chr12 114518487 114518727 -29267728 + MIR SINE MIR 2 261 -1 348 302 155 0 chr12 114518789 114518918 -29267537 + L2 LINE L2 3123 3271 -1 306 233 7 20 chr12 114518921 114519067 -29267388 + (TGGA)n Simple_repeat Simple_repeat 4 147 0 660 168 5 32 chr12 114519091 114519276 -29267179 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 377 243 58 10 chr12 114519288 114519391 -29267064 + L2 LINE L2 3203 3310 -3 232 310 133 38 chr12 114519635 114519793 -29266662 - MER5A DNA MER1_type -2 187 15 615 244 103 72 chr12 114519901 114520132 -29266323 + MIR SINE MIR 2 253 -9 608 225 7 56 chr12 114520214 114520356 -29266099 + L2 LINE L2 3179 3313 0 555 204 9 9 chr12 114521841 114521949 -29264506 - MIR SINE MIR -105 157 50 680 233 163 5 chr12 114522024 114522226 -29264229 - MIR SINE MIR -3 259 26 483 310 6 53 chr12 114522332 114522503 -29263952 - MIR SINE MIR -62 200 38 387 351 30 0 chr12 114522930 114523064 -29263391 + MIR3 SINE MIR 37 174 -34 1338 288 42 29 chr12 114523303 114523783 -29262672 + L2 LINE L2 2828 3313 0 295 357 128 20 chr12 114523812 114524008 -29262447 + L2 LINE L2 2949 3165 -107 228 290 0 0 chr12 114524080 114524149 -29262306 - MIR SINE MIR 0 262 194 190 271 0 71 chr12 114524150 114524235 -29262220 + MIR SINE MIR 184 262 0 555 314 109 13 chr12 114524241 114524480 -29261975 - MIR SINE MIR 0 262 1 526 216 105 41 chr12 114524954 114525125 -29261330 + MIR SINE MIR 19 200 -62 777 291 18 9 chr12 114525129 114525356 -29261099 - MIR SINE MIR -22 240 12 436 256 60 23 chr12 114525439 114525572 -29260883 - MIR SINE MIR -102 160 23 531 264 25 19 chr12 114525772 114525931 -29260524 - MIR SINE MIR -102 160 1 294 73 0 0 chr12 114525961 114526002 -29260453 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 247 333 0 0 chr12 114526004 114526073 -29260382 - L2 LINE L2 -18 3295 3227 190 342 26 35 chr12 114526222 114526336 -29260119 - L2 LINE L2 -179 3093 2981 2002 211 20 9 chr12 114526568 114527008 -29259447 - MLT1C LTR MaLR 0 467 23 241 288 186 8 chr12 114527047 114527165 -29259290 - MIR SINE MIR -87 175 37 204 179 77 0 chr12 114527902 114527941 -29258514 - L2 LINE L2 0 3272 3231 2329 116 6 0 chr12 114528019 114528365 -29258090 + L1PA13 LINE L1 5814 6161 -2 284 289 89 28 chr12 114528659 114528839 -29257616 - MLT1K LTR MaLR -20 568 378 182 294 82 35 chr12 114529389 114529474 -29256981 - L2 LINE L2 -531 2783 2695 263 256 182 50 chr12 114529575 114529696 -29256759 + MIR SINE MIR 120 256 -6 201 129 0 0 chr12 114529703 114529734 -29256721 + (TCTCTG)n Simple_repeat Simple_repeat 5 35 0 313 269 0 48 chr12 114529806 114529910 -29256545 + CT-rich Low_complexity Low_complexity 3 101 0 327 330 27 9 chr12 114530510 114530622 -29255833 + MIR SINE MIR 34 147 -61 700 241 94 14 chr12 114530684 114530896 -29255559 + MIR SINE MIR 8 236 -26 180 353 118 32 chr12 114531164 114531351 -29255104 - MIR SINE MIR -14 248 46 2211 98 0 64 chr12 114532855 114533183 -29253272 - AluSc SINE Alu -2 307 1 311 299 33 79 chr12 114533342 114533556 -29252899 - L2 LINE L2 -57 3215 3012 354 301 49 28 chr12 114533571 114533714 -29252741 - L2 LINE L2 0 3272 3127 653 219 24 37 chr12 114533731 114533895 -29252560 - MIR SINE MIR 0 262 101 259 371 32 28 chr12 114534025 114534278 -29252177 - L2 LINE L2 -338 2976 2723 451 246 86 70 chr12 114534283 114534470 -29251985 - L2 LINE L2 -3 3310 3121 528 208 214 46 chr12 114536179 114536352 -29250103 - MIR SINE MIR -43 219 18 313 283 33 33 chr12 114536526 114536646 -29249809 - MIR SINE MIR -2 260 141 496 220 220 13 chr12 114536812 114536962 -29249493 - MER5A DNA MER1_type 0 189 9 303 28 0 0 chr12 114537127 114537163 -29249292 + (TA)n Simple_repeat Simple_repeat 2 37 0 2007 128 0 37 chr12 114537163 114537459 -29248996 - AluSg SINE Alu -25 285 1 393 220 14 7 chr12 114537969 114538110 -29248345 + CT-rich Low_complexity Low_complexity 2 143 0 282 73 0 0 chr12 114538110 114538151 -29248304 + (CA)n Simple_repeat Simple_repeat 1 41 0 298 262 139 16 chr12 114538581 114538703 -29247752 - L2 LINE L2 -3 3269 3133 188 320 13 0 chr12 114539226 114539301 -29247154 - MIR SINE MIR -105 103 28 474 355 42 23 chr12 114540742 114540956 -29245499 + MIR SINE MIR 18 235 -27 712 286 43 17 chr12 114541617 114541848 -29244607 + MIR SINE MIR 2 238 -24 231 203 76 63 chr12 114541924 114542003 -29244452 - MER91C DNA MER1_type -26 114 35 868 287 81 12 chr12 114542041 114542362 -29244093 - LTR16C LTR ERVL 0 491 149 538 233 104 15 chr12 114542527 114542727 -29243728 - MIR SINE MIR -18 244 20 267 273 23 0 chr12 114543642 114543730 -29242725 - MIR SINE MIR -108 154 65 234 191 0 0 chr12 114543760 114543802 -29242653 - MIR SINE MIR -62 146 105 192 135 0 0 chr12 114545072 114545109 -29241346 + (CA)n Simple_repeat Simple_repeat 1 37 0 751 262 59 9 chr12 114545606 114545827 -29240628 + MIR SINE MIR 23 254 -8 387 344 44 11 chr12 114545834 114546017 -29240438 + MIR SINE MIR 73 261 -1 1652 191 0 27 chr12 114546036 114546334 -29240121 - AluJo SINE Alu -22 290 1 578 299 66 33 chr12 114546365 114546606 -29239849 + MIR SINE MIR 1 249 -13 1820 137 0 11 chr12 114546773 114547036 -29239419 + AluSx SINE Alu 5 264 -48 200 211 0 77 chr12 114547283 114547335 -29239120 - MIR3 SINE MIR -51 157 110 396 270 37 17 chr12 114547845 114547990 -29238465 + MIR SINE MIR 103 250 -12 503 161 0 11 chr12 114548161 114548248 -29238207 - FLAM SINE Alu -15 128 43 467 251 100 92 chr12 114548252 114548353 -29238102 - L1ME4a LINE L1 0 6121 6022 2254 158 2 60 chr12 114548353 114548771 -29237684 - MLT2C1 LTR ERVL -3 394 1 467 251 100 92 chr12 114548771 114549112 -29237343 - L1ME4a LINE L1 -99 6022 5672 1095 189 144 101 chr12 114549112 114549550 -29236905 + LTR16A1 LTR ERVL 1 457 0 467 251 100 92 chr12 114549550 114549585 -29236870 - L1ME4a LINE L1 -449 5672 5639 272 267 70 0 chr12 114550079 114550165 -29236290 + MIR SINE MIR 41 132 -76 188 294 147 15 chr12 114550393 114550529 -29235926 + L3 LINE CR1 1163 1316 -261 2458 130 0 22 chr12 114550604 114550972 -29235483 - THE1B LTR MaLR -2 362 3 201 360 126 0 chr12 114551037 114551148 -29235307 + L3 LINE CR1 1416 1540 -37 325 221 63 87 chr12 114551168 114551295 -29235160 + L2 LINE L2 3165 3288 -25 288 212 165 0 chr12 114551424 114551509 -29234946 + MER113 DNA MER1_type? 326 424 -97 704 233 96 47 chr12 114551985 114552329 -29234126 - MER113 DNA MER1_type? -154 367 7 594 250 62 23 chr12 114552879 114553055 -29233400 + MIR3 SINE MIR 21 203 -5 911 148 0 16 chr12 114553179 114553362 -29233093 + (ATG)n Simple_repeat Simple_repeat 1 180 0 457 319 6 44 chr12 114553404 114553586 -29232869 - MIR SINE MIR -14 248 74 495 309 97 5 chr12 114553713 114553930 -29232525 - MIR SINE MIR -3 259 23 613 261 108 28 chr12 114554030 114554206 -29232249 + MER91A DNA MER1_type 5 194 -2 239 205 0 0 chr12 114554659 114554698 -29231757 - MIR SINE MIR -7 255 217 946 261 26 0 chr12 114554712 114554942 -29231513 - MIR SINE MIR -11 251 16 469 262 94 7 chr12 114554975 114555124 -29231331 - MIR SINE MIR -69 193 32 345 314 5 81 chr12 114555343 114555528 -29230927 - L1MC4 LINE L1 -11 8031 7861 243 216 172 17 chr12 114555576 114555692 -29230763 - L1ME2 LINE L1 -11 6153 6020 381 312 19 38 chr12 114555919 114556076 -29230379 - MIR SINE MIR -62 200 47 235 295 128 42 chr12 114556241 114556553 -29229902 - L2 LINE L2 -1370 1944 1606 266 62 98 0 chr12 114556975 114557021 -29229434 - MIR SINE MIR -55 153 100 291 279 0 0 chr12 114557052 114557120 -29229335 - MIR SINE MIR -51 211 144 320 64 21 0 chr12 114557362 114557409 -29229046 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 214 303 121 18 chr12 114557483 114557648 -29228807 - L2 LINE L2 -357 2957 2776 252 87 98 0 chr12 114557678 114557724 -29228731 + MIR SINE MIR 100 153 -55 627 258 22 94 chr12 114557910 114558185 -29228270 - MIR SINE MIR -5 257 3 196 240 230 10 chr12 114558757 114558857 -29227598 - MIR SINE MIR -11 251 130 476 224 60 9 chr12 114559004 114559120 -29227335 - MIR SINE MIR -62 200 79 438 179 47 38 chr12 114559391 114559497 -29226958 + MIR SINE MIR 70 176 -86 1332 91 0 0 chr12 114559503 114559690 -29226765 + MER30 DNA MER1_type 1 187 -43 21 0 0 0 chr12 114559933 114559954 -29226501 + AT_rich Low_complexity Low_complexity 1 21 0 255 145 48 65 chr12 114560033 114560095 -29226360 - MIR SINE MIR -199 63 3 254 288 27 99 chr12 114560241 114560294 -29226161 - MIR3 SINE MIR -3 205 163 321 304 82 33 chr12 114560294 114560478 -29225977 + MER117 DNA MER1_type 1 193 -4 254 288 27 99 chr12 114560478 114560535 -29225920 - MIR3 SINE MIR -45 163 103 * 423 291 40 42 chr12 114560530 114560703 -29225752 + MIR3 SINE MIR 36 205 -28 624 266 25 6 chr12 114560799 114560957 -29225498 + MER5B DNA MER1_type 14 174 -4 275 331 33 16 chr12 114561641 114561762 -29224693 + MIR3 SINE MIR 67 189 -19 267 79 0 0 chr12 114562029 114562067 -29224388 + (TC)n Simple_repeat Simple_repeat 2 39 0 351 351 0 14 chr12 114562114 114562349 -29224106 + CT-rich Low_complexity Low_complexity 1 231 0 359 263 51 36 chr12 114564072 114564209 -29222246 - MIR SINE MIR -71 191 53 694 220 145 5 chr12 114564291 114564477 -29221978 + MIR SINE MIR 16 227 -35 339 329 105 19 chr12 114564611 114564821 -29221634 + L2 LINE L2 2826 3053 -219 309 259 97 54 chr12 114564930 114565115 -29221340 - MLT1H LTR MaLR -259 290 98 2041 124 3 32 chr12 114565173 114565488 -29220967 - AluJo SINE Alu -6 306 1 367 174 0 14 chr12 114565642 114565711 -29220744 + L2 LINE L2 3245 3312 -1 231 36 0 0 chr12 114566021 114566049 -29220406 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 397 294 103 7 chr12 114566247 114566383 -29220072 + MIR SINE MIR 4 152 -110 316 190 0 0 chr12 114566612 114566674 -29219781 - MIR SINE MIR -86 122 61 210 265 5 0 chr12 114566679 114566738 -29219717 + MIR SINE MIR 25 84 -124 532 236 7 61 chr12 114566959 114567013 -29219442 - MIR SINE MIR -117 145 90 1658 169 12 35 chr12 114567013 114567357 -29219098 + L1MA10 LINE L1 5989 6324 -10 532 236 7 61 chr12 114567357 114567450 -29219005 - MIR SINE MIR -172 90 6 212 211 0 39 chr12 114567486 114567538 -29218917 + L2 LINE L2 3212 3261 -11 187 167 0 0 chr12 114567929 114567959 -29218496 - MIR3 SINE MIR -19 189 160 266 315 126 0 chr12 114567966 114568077 -29218378 + MER5B DNA MER1_type 1 125 -53 1268 77 55 0 chr12 114568078 114568259 -29218196 - L1PA11 LINE L1 -4 6170 5980 247 316 0 0 chr12 114568505 114568584 -29217871 + MER102a DNA MER1_type 252 330 0 657 151 105 134 chr12 114568593 114568698 -29217757 + MER5A DNA MER1_type 23 124 -65 2233 87 11 0 chr12 114568698 114569001 -29217454 - AluY SINE Alu 0 306 1 657 151 105 134 chr12 114569001 114569066 -29217389 + MER5A DNA MER1_type 124 189 0 555 250 128 11 chr12 114569077 114569241 -29217214 + MER5A DNA MER1_type 4 189 0 709 325 17 4 chr12 114569949 114570180 -29216275 - MIR SINE MIR 0 262 29 34 24 0 0 chr12 114570306 114570347 -29216108 + AT_rich Low_complexity Low_complexity 1 41 0 1331 103 70 1 chr12 114570387 114570634 -29215821 - L1P5 LINE L1 -322 5833 5568 395 332 47 36 chr12 114570656 114570849 -29215606 + MIR SINE MIR 49 243 -19 225 222 48 16 chr12 114571476 114571539 -29214916 - L2 LINE L2 -4 3268 3204 469 268 83 13 chr12 114571566 114571723 -29214732 + MIR SINE MIR 30 197 -65 188 274 48 113 chr12 114572422 114572546 -29213909 - MIR SINE MIR 0 262 147 1123 176 21 5 chr12 114572547 114572740 -29213715 + MIR SINE MIR 1 196 -66 39 88 0 0 chr12 114572744 114572846 -29213609 + AT_rich Low_complexity Low_complexity 1 102 0 2029 148 0 3 chr12 114573019 114573324 -29213131 - AluJo SINE Alu -8 304 1 258 32 0 0 chr12 114575639 114575670 -29210785 + (TG)n Simple_repeat Simple_repeat 1 31 0 284 136 0 15 chr12 114575670 114575736 -29210719 + (GA)n Simple_repeat Simple_repeat 2 66 0 258 132 0 0 chr12 114576245 114576298 -29210157 + (GA)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chr12 114577594 114577616 -29208839 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 333 280 28 19 chr12 114577617 114577724 -29208731 - L2 LINE L2 -14 3299 3192 220 216 69 95 chr12 114577809 114577925 -29208530 - MIR SINE MIR -79 183 71 190 239 28 0 chr12 114578960 114579031 -29207424 + CT-rich Low_complexity Low_complexity 6 78 0 211 300 0 50 chr12 114579057 114579157 -29207298 + CT-rich Low_complexity Low_complexity 6 100 0 285 29 0 0 chr12 114579295 114579329 -29207126 + (GA)n Simple_repeat Simple_repeat 2 35 0 206 229 21 0 chr12 114579407 114579455 -29207000 + L2 LINE L2 3248 3296 -17 215 320 59 0 chr12 114579459 114579612 -29206843 - L2 LINE L2 -733 2581 2420 257 284 40 0 chr12 114579800 114579874 -29206581 - MIR SINE MIR -84 124 48 331 165 24 0 chr12 114579928 114580013 -29206442 + GA-rich Low_complexity Low_complexity 2 88 0 263 328 35 52 chr12 114580847 114580963 -29205492 + MER5B DNA MER1_type 31 144 -34 258 282 14 0 chr12 114581163 114581234 -29205221 + L2 LINE L2 3201 3272 0 714 209 63 0 chr12 114581388 114581546 -29204909 - MER63A DNA MER1_type 0 210 43 335 156 33 11 chr12 114581548 114581638 -29204817 + CT-rich Low_complexity Low_complexity 2 93 0 1020 222 43 13 chr12 114582175 114582409 -29204046 + MIR SINE MIR 12 252 -10 318 314 41 8 chr12 114582816 114582937 -29203518 + MIR SINE MIR 20 144 -118 195 268 0 0 chr12 114582965 114583006 -29203449 + MIR SINE MIR 221 261 -1 1869 180 36 15 chr12 114583769 114584158 -29202297 - L1MC2 LINE L1 -11 6333 5937 293 228 228 0 chr12 114584182 114584296 -29202159 + Charlie8 DNA MER1_type 79 218 -2199 375 289 8 56 chr12 114585115 114585263 -29201192 + MIR SINE MIR 29 169 -59 329 229 152 29 chr12 114585402 114585507 -29200948 - L2 LINE L2 -1 3312 3195 182 286 79 0 chr12 114585533 114585596 -29200859 + L2 LINE L2 2559 2626 -688 207 350 125 6 chr12 114585676 114585836 -29200619 + L2 LINE L2 2861 3039 -233 504 283 37 42 chr12 114585894 114586085 -29200370 - MIR SINE MIR -2 260 71 411 256 86 8 chr12 114586097 114586214 -29200241 + L2 LINE L2 3147 3272 0 221 270 30 30 chr12 114586900 114586929 -29199526 + (ATATG)n Simple_repeat Simple_repeat 1 29 -71 2571 120 80 12 chr12 114586929 114587330 -29199125 - MSTA LTR MaLR 0 428 1 221 270 30 30 chr12 114587330 114587400 -29199055 + (ATATG)n Simple_repeat Simple_repeat 28 100 0 660 281 11 6 chr12 114587436 114587614 -29198841 + MIR SINE MIR 13 191 -71 456 320 26 41 chr12 114587642 114587836 -29198619 + MIR SINE MIR 14 204 -58 2554 158 9 18 chr12 114587841 114588297 -29198158 + MLT1C LTR MaLR 1 452 -15 214 265 0 0 chr12 114588298 114588347 -29198108 + L2 LINE L2 3213 3261 -11 290 254 15 15 chr12 114588440 114588507 -29197948 + MIR SINE MIR 81 147 -61 405 248 97 28 chr12 114588560 114588747 -29197708 - MIR SINE MIR -54 208 14 426 343 40 11 chr12 114589514 114589689 -29196766 - MIR SINE MIR -16 246 67 345 125 0 47 chr12 114589767 114589831 -29196624 + AluSc SINE Alu 71 131 -168 1639 86 0 34 chr12 114589785 114590019 -29196436 + AluY SINE Alu 86 311 0 2230 166 73 25 chr12 114590043 114590525 -29195930 + MLT1D LTR MaLR 1 505 0 216 0 0 0 chr12 114590751 114590775 -29195680 + (T)n Simple_repeat Simple_repeat 1 24 0 1428 253 160 24 chr12 114590808 114591303 -29195152 - L1ME3 LINE L1 -12 6150 5589 3176 147 29 27 chr12 114591551 114592016 -29194439 - LTR45 LTR ERV1 0 525 57 738 197 8 0 chr12 114592016 114592143 -29194312 - FLAM_C SINE Alu -5 128 1 3176 147 29 27 chr12 114592143 114592201 -29194254 - LTR45 LTR ERV1 -468 57 1 1245 250 160 2 chr12 114592285 114592729 -29193726 + MER113 DNA MER1_type? 8 521 0 448 257 99 26 chr12 114592753 114592905 -29193550 + MIR SINE MIR 35 197 -65 296 258 63 88 chr12 114593263 114593307 -29193148 + MIR SINE MIR 38 82 -180 877 81 15 7 chr12 114593307 114593443 -29193012 + (TTTC)n Simple_repeat Simple_repeat 3 139 0 1970 119 0 0 chr12 114593443 114593721 -29192734 - AluSx SINE Alu -32 280 3 296 258 63 88 chr12 114593721 114593834 -29192621 + MIR SINE MIR 80 192 -70 662 266 149 50 chr12 114594105 114594529 -29191926 - MLT1K LTR MaLR -31 557 92 330 313 52 0 chr12 114594873 114594988 -29191467 + MIR3 SINE MIR 15 135 -73 813 233 24 29 chr12 114595109 114595315 -29191140 + MIR SINE MIR 37 241 -21 336 311 84 0 chr12 114595372 114595491 -29190964 + L2 LINE L2 3141 3269 -3 3320 106 6 37 chr12 114595529 114596018 -29190437 + MER1A DNA MER1_type 56 529 0 341 266 7 0 chr12 114596936 114597079 -29189376 + (ATG)n Simple_repeat Simple_repeat 3 146 0 258 258 21 62 chr12 114597089 114597186 -29189269 - MIR SINE MIR -29 233 141 381 247 0 0 chr12 114597190 114597271 -29189184 + MIR SINE MIR 77 157 -105 228 270 168 19 chr12 114597327 114597479 -29188976 - MIR SINE MIR -50 212 30 1285 219 52 1 chr12 114597968 114598276 -29188179 + MER33 DNA MER1_type 1 312 -12 527 321 0 0 chr12 114598316 114598450 -29188005 + MIR SINE MIR 16 149 -113 521 221 153 0 chr12 114598757 114598888 -29187567 - MIR SINE MIR -109 153 3 366 225 45 0 chr12 114598913 114599002 -29187453 - MIR SINE MIR -102 160 68 2027 217 54 11 chr12 114599019 114599462 -29186993 + MLT1C LTR MaLR 6 467 0 1046 141 203 76 chr12 114599467 114599758 -29186697 + MLT1A1 LTR MaLR 1 328 -37 405 0 0 0 chr12 114600422 114600467 -29185988 + (TG)n Simple_repeat Simple_repeat 2 46 0 563 289 82 5 chr12 114600609 114600803 -29185652 - MIR SINE MIR -34 228 20 426 277 215 31 chr12 114600908 114601103 -29185352 + MIR SINE MIR 5 235 -27 1581 168 3 30 chr12 114601230 114601534 -29184921 - AluJo SINE Alu -16 296 1 254 281 12 12 chr12 114601556 114601638 -29184817 - L2 LINE L2 -37 3235 3154 816 195 76 43 chr12 114601698 114601908 -29184547 + MER20 DNA MER1_type 3 219 0 2285 60 0 0 chr12 114602440 114602750 -29183705 - AluY SINE Alu 0 310 1 2789 175 97 26 chr12 114602772 114603424 -29183031 - L1ME1 LINE L1 -2 6164 5467 226 114 0 0 chr12 114603541 114603576 -29182879 - L1M2 LINE L1 -833 5458 5424 445 299 115 11 chr12 114603648 114603822 -29182633 + MIR SINE MIR 13 204 -58 26 64 0 0 chr12 114603828 114603875 -29182580 + AT_rich Low_complexity Low_complexity 1 47 0 192 297 40 0 chr12 114603879 114603953 -29182502 + MIR SINE MIR 166 242 -20 804 202 22 28 chr12 114604027 114604205 -29182250 + MIR SINE MIR 34 210 -52 813 152 8 15 chr12 114604251 114604383 -29182072 + FLAM_C SINE Alu 2 132 -1 718 257 73 5 chr12 114604384 114604602 -29181853 + L1ME3 LINE L1 5930 6162 0 911 283 62 4 chr12 114605001 114605241 -29181214 - MIR SINE MIR -1 261 8 1046 227 0 14 chr12 114605980 114606200 -29180255 + MER20 DNA MER1_type 3 219 0 321 313 0 27 chr12 114606269 114606381 -29180074 + MIR SINE MIR 71 179 -83 211 244 0 0 chr12 114606425 114606470 -29179985 + (TTA)n Simple_repeat Simple_repeat 3 47 0 508 337 114 7 chr12 114606865 114607138 -29179317 - LTR16C LTR ERVL 0 491 190 437 302 47 16 chr12 114607434 114607563 -29178892 + MIR SINE MIR 106 238 -24 423 243 69 28 chr12 114608012 114608156 -29178299 - Charlie8 DNA MER1_type -1928 489 340 312 333 12 12 chr12 114608253 114608424 -29178031 + L1M4 LINE L1 2 172 -6370 1428 264 30 21 chr12 114608427 114608892 -29177563 + L1M4 LINE L1 832 1300 -5242 411 329 9 5 chr12 114609401 114609614 -29176841 + L1M4 LINE L1 1896 2109 -4537 202 255 21 0 chr12 114610144 114610191 -29176264 + MER91B DNA MER1_type 1 48 -142 199 306 89 32 chr12 114610268 114610392 -29176063 - MIR3 SINE MIR -1 207 77 559 240 211 6 chr12 114610442 114610613 -29175842 - MIR SINE MIR -37 225 20 770 223 115 42 chr12 114610748 114611035 -29175420 - MLT1G1 LTR MaLR -285 310 3 337 243 24 3 chr12 114611207 114611384 -29175071 + LTR33 LTR ERVL 4 227 -294 260 91 23 0 chr12 114611656 114611700 -29174755 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 199 122 41 20 chr12 114612083 114612132 -29174323 - MIR SINE MIR -76 132 83 426 312 8 16 chr12 114612614 114612739 -29173716 + MIR SINE MIR 21 144 -118 3782 216 38 33 chr12 114612832 114613500 -29172955 - L1ME1 LINE L1 -5 6161 5498 203 0 37 0 chr12 114613500 114613527 -29172928 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1460 164 44 36 chr12 114613530 114613805 -29172650 - AluJo SINE Alu -35 277 1 3782 216 38 33 chr12 114613805 114614208 -29172247 - L1ME1 LINE L1 -669 5497 5077 246 301 118 26 chr12 114614855 114615008 -29171447 - MIR SINE MIR -15 247 81 255 246 14 0 chr12 114615068 114615137 -29171318 - MIR SINE MIR -6 256 187 239 219 24 134 chr12 114615137 114615219 -29171236 - MLT1L LTR MaLR 0 549 477 468 268 109 25 chr12 114615320 114615588 -29170867 - MLT1H LTR MaLR -144 265 3 390 262 195 0 chr12 114615591 114615740 -29170715 - MIR SINE MIR -72 190 13 322 273 293 53 chr12 114616732 114617165 -29169290 + MLT1H LTR MaLR 13 549 0 322 290 142 13 chr12 114617337 114617492 -29168963 - MLT1L LTR MaLR -2 613 439 215 229 0 0 chr12 114617494 114617542 -29168913 + T-rich Low_complexity Low_complexity 3 50 0 341 234 25 125 chr12 114617548 114617853 -29168602 - MLT1L LTR MaLR -174 441 111 1056 253 94 41 chr12 114618040 114618380 -29168075 + LTR16A LTR ERVL 93 450 0 842 233 71 5 chr12 114618443 114618653 -29167802 - MER58A DNA MER1_type 0 224 1 201 280 0 20 chr12 114618655 114618705 -29167750 - MIR3 SINE MIR -50 158 110 431 266 77 12 chr12 114618711 114618899 -29167556 - MIR SINE MIR -50 158 5 202 356 41 14 chr12 114619392 114619465 -29166990 + MIR SINE MIR 8 82 -180 551 253 167 0 chr12 114619473 114619623 -29166832 + MER5A DNA MER1_type 9 183 -6 294 253 165 0 chr12 114619628 114619707 -29166748 + L2 LINE L2 2983 3074 -198 446 326 50 0 chr12 114619875 114620056 -29166399 - MIR SINE MIR -72 190 1 599 263 82 12 chr12 114620599 114620770 -29165685 - MIR SINE MIR -23 239 57 217 330 75 0 chr12 114620861 114620967 -29165488 + MIR SINE MIR 122 235 -27 259 336 8 78 chr12 114621030 114621158 -29165297 - MIR SINE MIR -59 149 31 270 250 0 0 chr12 114621185 114621249 -29165206 - MIR SINE MIR -59 149 86 189 229 169 23 chr12 114621256 114621376 -29165079 + MIR SINE MIR 8 146 -62 344 232 16 64 chr12 114621856 114621981 -29164474 + MIR SINE MIR 32 150 -112 1522 199 77 24 chr12 114622791 114623167 -29163288 + MSTD LTR MaLR 1 396 0 1807 187 5 72 chr12 114623507 114623925 -29162530 - MLT1B LTR MaLR 0 390 1 707 142 0 0 chr12 114624234 114624375 -29162080 - FLAM_C SINE Alu 0 171 31 375 356 7 0 chr12 114624398 114624533 -29161922 - MIR SINE MIR -36 226 91 237 237 51 0 chr12 114624790 114624849 -29161606 + L1ME LINE L1 5716 5777 -344 7160 25 2 0 chr12 114624932 114625749 -29160706 - L1PA4 LINE L1 -3 6152 5334 636 175 12 32 chr12 114625890 114626138 -29160317 + CT-rich Low_complexity Low_complexity 1 242 0 918 304 149 15 chr12 114626389 114626931 -29159524 + MLT1L LTR MaLR 1 615 0 189 345 0 18 chr12 114627849 114627904 -29158551 + MIR SINE MIR 20 73 -189 368 253 95 0 chr12 114627907 114628002 -29158453 + L2 LINE L2 3188 3291 -22 986 168 0 0 chr12 114628452 114628613 -29157842 + FRAM SINE Alu 1 158 -18 2196 101 0 13 chr12 114628841 114629147 -29157308 + AluSg SINE Alu 1 302 -8 1863 153 0 10 chr12 114631266 114631567 -29154888 - AluSx SINE Alu -14 298 1 744 293 156 42 chr12 114631801 114632434 -29154021 - L2 LINE L2 -1 3312 2599 453 195 70 144 chr12 114632434 114632649 -29153806 - MIR SINE MIR -35 227 29 327 219 29 131 chr12 114632916 114633053 -29153402 - L1ME3 LINE L1 -9 6153 6031 234 297 0 66 chr12 114633384 114633475 -29152980 + MIR3 SINE MIR 117 201 -7 720 284 47 17 chr12 114633664 114633900 -29152555 + MIR SINE MIR 20 262 0 272 321 143 14 chr12 114634378 114634907 -29151548 + L2 LINE L2 2488 3079 -193 1444 140 25 65 chr12 114634922 114635201 -29151254 + AluJb SINE Alu 1 268 -44 360 297 14 36 chr12 114635257 114635395 -29151060 + L2 LINE L2 3138 3272 0 487 322 0 0 chr12 114635395 114635538 -29150917 + (TGGG)n Simple_repeat Simple_repeat 1 143 0 373 201 4 64 chr12 114635553 114635809 -29150646 + (TGGG)n Simple_repeat Simple_repeat 1 240 0 236 368 9 9 chr12 114635892 114635998 -29150457 + MIR SINE MIR 21 126 -82 265 293 12 12 chr12 114636101 114636183 -29150272 + MIR SINE MIR 68 149 -59 345 245 32 32 chr12 114636535 114636629 -29149826 + MIR3 SINE MIR 110 203 -5 270 271 29 0 chr12 114636950 114637020 -29149435 + CT-rich Low_complexity Low_complexity 5 76 0 199 333 16 0 chr12 114637045 114637108 -29149347 + MIR SINE MIR 37 100 -162 209 246 66 82 chr12 114637802 114637924 -29148531 + MIR3 SINE MIR 81 200 -8 866 229 76 5 chr12 114638456 114638666 -29147789 + MIR SINE MIR 36 260 -2 630 284 21 5 chr12 114638704 114638894 -29147561 + MIR SINE MIR 20 212 -50 203 308 0 0 chr12 114641289 114641341 -29145114 - L2 LINE L2 -1 3312 3261 * 829 248 101 0 chr12 114641316 114641534 -29144921 - MIR SINE MIR -22 240 1 393 276 36 58 chr12 114641943 114642099 -29144356 - MIR SINE MIR -63 145 7 579 318 61 0 chr12 114642660 114642858 -29143597 + MIR SINE MIR 50 259 -3 187 239 155 42 chr12 114642864 114642935 -29143520 - MIR SINE MIR -164 98 20 272 296 93 0 chr12 114643438 114643546 -29142909 - MIR SINE MIR -143 119 2 352 279 114 46 chr12 114643625 114643887 -29142568 - L2 LINE L2 -38 3234 2955 696 180 22 62 chr12 114644350 114644528 -29141927 + MIR SINE MIR 20 190 -72 2132 123 10 0 chr12 114644734 114645027 -29141428 + AluSx SINE Alu 1 296 -16 2679 138 0 21 chr12 114645251 114645687 -29140768 + Tigger2a DNA MER2_type 3 429 -5 341 184 4 2 chr12 114645778 114645848 -29140607 - MIR SINE MIR -68 140 80 362 286 170 13 chr12 114646442 114646666 -29139789 - MIR SINE MIR -2 260 2 363 274 44 9 chr12 114647167 114647280 -29139175 + MIR SINE MIR 80 196 -66 1191 222 82 42 chr12 114647713 114648114 -29138341 + MLT1C LTR MaLR 51 467 0 571 217 42 42 chr12 114648348 114648514 -29137941 - MLT1G LTR MaLR -309 281 116 537 219 55 0 chr12 114648524 114648652 -29137803 - L1MD2 LINE L1 -18 6341 6207 279 0 0 0 chr12 114648656 114648687 -29137768 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 630 333 12 12 chr12 114648765 114649014 -29137441 + MIR SINE MIR 1 249 -13 296 331 40 20 chr12 114649014 114649162 -29137293 - MIR SINE MIR -12 250 100 2331 109 0 7 chr12 114649261 114649565 -29136890 - AluSc SINE Alu -7 302 1 250 226 0 0 chr12 114649722 114649775 -29136680 + L2 LINE L2 3249 3301 -12 216 186 34 68 chr12 114649724 114649783 -29136672 + MIR SINE MIR 206 262 0 * 372 262 71 16 chr12 114649795 114649921 -29136534 - MIR SINE MIR -13 249 117 181 206 15 15 chr12 114650092 114650160 -29136295 + (CA)n Simple_repeat Simple_repeat 2 69 0 329 304 103 22 chr12 114650252 114650476 -29135979 + L1MC/D LINE L1 5296 5537 -2271 387 274 19 0 chr12 114650594 114650700 -29135755 - LTR16A1 LTR ERVL -14 443 336 285 213 128 11 chr12 114651620 114651714 -29134741 - MIR SINE MIR -77 185 81 190 240 115 73 chr12 114652172 114652268 -29134187 - MIR SINE MIR -80 182 83 373 224 58 19 chr12 114652681 114652881 -29133574 + (TCTCTG)n Simple_repeat Simple_repeat 1 207 0 302 153 17 0 chr12 114653350 114653409 -29133046 + L2 LINE L2 3215 3274 -39 342 310 9 9 chr12 114653444 114653557 -29132898 - MIR SINE MIR -119 143 31 398 322 107 0 chr12 114654419 114654624 -29131831 + LTR33 LTR ERVL 289 515 -6 293 306 51 0 chr12 114654816 114654914 -29131541 + L2 LINE L2 2694 2796 -518 247 180 12 18 chr12 114656160 114656217 -29130238 - MIR SINE MIR -63 145 90 442 259 147 0 chr12 114656310 114656453 -29130002 + MIR SINE MIR 49 212 -50 477 268 30 30 chr12 114656999 114657163 -29129292 - L2 LINE L2 -1 3312 3149 * 853 228 54 42 chr12 114657156 114657397 -29129058 + MIR SINE MIR 10 253 -9 207 266 31 0 chr12 114657458 114657522 -29128933 + L2 LINE L2 3027 3092 -221 723 150 0 8 chr12 114657619 114657739 -29128716 + FRAM SINE Alu 42 160 -16 381 235 25 17 chr12 114658208 114658327 -29128128 - L2 LINE L2 -208 3064 2945 315 0 0 0 chr12 114658353 114658388 -29128067 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 286 134 49 chr12 114658389 114658613 -29127842 - L2 LINE L2 -449 2865 2623 1798 159 0 36 chr12 114659522 114659830 -29126625 + AluJo SINE Alu 1 297 -15 190 317 0 67 chr12 114660066 114660186 -29126269 + L2 LINE L2 2878 2989 -324 292 341 51 42 chr12 114660256 114660473 -29125982 - MIR SINE MIR -25 237 19 581 268 32 0 chr12 114660742 114660899 -29125556 - MIR SINE MIR -81 181 20 243 256 56 11 chr12 114661507 114661597 -29124858 - MIR3 SINE MIR -1 207 114 206 225 200 12 chr12 114661644 114661724 -29124731 + MIR SINE MIR 56 150 -112 407 277 18 0 chr12 114661759 114661871 -29124584 + MER81 DNA DNA 1 114 0 609 209 8 15 chr12 114662945 114663079 -29123376 - FLAM_C SINE Alu 0 133 1 2251 89 52 0 chr12 114663120 114663411 -29123044 - AluSp SINE Alu -7 306 1 504 263 45 0 chr12 114663692 114663825 -29122630 - MIR SINE MIR -18 244 106 186 304 0 0 chr12 114663896 114663942 -29122513 - MIR SINE MIR -98 164 119 323 269 128 14 chr12 114664015 114664156 -29122299 + MIR SINE MIR 27 183 -79 624 219 85 0 chr12 114664255 114664419 -29122036 - MER45A DNA AcHobo 0 178 1 202 232 12 37 chr12 114664572 114664654 -29121801 + GA-rich Low_complexity Low_complexity 4 83 0 1546 134 8 39 chr12 114665037 114665291 -29121164 - AluJb SINE Alu -66 246 1 758 268 68 31 chr12 114666063 114666401 -29120054 - L1MC4a LINE L1 -337 5828 5658 230 286 114 0 chr12 114666652 114666722 -29119733 + MIR SINE MIR 109 186 -76 474 281 89 0 chr12 114667448 114667594 -29118861 - MIR SINE MIR -55 207 49 606 235 42 115 chr12 114667609 114667869 -29118586 + MIR SINE MIR 9 249 -13 201 74 0 0 chr12 114667875 114667902 -29118553 + (TTG)n Simple_repeat Simple_repeat 1 27 0 512 278 210 10 chr12 114668063 114668354 -29118101 - L2 LINE L2 0 3272 2924 512 284 7 7 chr12 114669109 114669257 -29117198 + LTR16A1 LTR ERVL 1 148 -309 298 250 25 0 chr12 114669274 114669354 -29117101 + LTR16A1 LTR ERVL 256 337 -120 475 168 32 56 chr12 114669379 114669504 -29116951 + MER96B DNA MER1_type? 5 126 -291 871 178 0 0 chr12 114669504 114669650 -29116805 + FRAM SINE Alu 1 40 0 229 154 58 0 chr12 114669650 114669702 -29116753 - MER96B DNA MER1_type? -122 295 241 368 188 23 11 chr12 114669723 114669837 -29116618 + LTR16A1 LTR ERVL 377 457 0 1000 196 27 0 chr12 114670022 114670206 -29116249 + MSTB1 LTR MaLR 1 189 -237 277 261 246 7 chr12 114670656 114670798 -29115657 + L2 LINE L2 2924 3099 -173 1578 144 57 0 chr12 114670801 114671065 -29115390 + MSTB1 LTR MaLR 154 432 0 243 0 0 0 chr12 114671531 114671558 -29114897 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 314 23 0 chr12 114671737 114671823 -29114632 + MIR SINE MIR 36 123 -85 558 208 0 0 chr12 114672499 114672605 -29113850 + MIR SINE MIR 41 146 -116 220 261 0 0 chr12 114673222 114673268 -29113187 + GA-rich Low_complexity Low_complexity 2 47 0 357 188 12 71 chr12 114673806 114673891 -29112564 - MIR SINE MIR -87 175 96 223 296 6 34 chr12 114674738 114674914 -29111541 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 * 318 247 17 23 chr12 114674800 114674974 -29111481 + (TA)n Simple_repeat Simple_repeat 1 173 0 205 244 0 0 chr12 114675093 114675138 -29111317 - MIR SINE MIR -57 151 107 22 0 0 0 chr12 114675661 114675683 -29110772 + AT_rich Low_complexity Low_complexity 1 22 0 652 203 99 45 chr12 114676324 114676462 -29109993 + MIR SINE MIR 49 203 -59 1576 144 94 21 chr12 114676462 114676802 -29109653 - MLT1A1 LTR MaLR 0 365 1 652 203 99 45 chr12 114676802 114676865 -29109590 + MIR SINE MIR 203 261 -1 452 205 18 27 chr12 114676978 114677090 -29109365 + MIR SINE MIR 56 166 -96 1070 199 13 22 chr12 114677140 114677366 -29109089 + MER58A DNA MER1_type 1 224 0 204 235 0 0 chr12 114678321 114678372 -29108083 + T-rich Low_complexity Low_complexity 1 51 0 785 161 0 0 chr12 114678387 114678511 -29107944 - FLAM_C SINE Alu -9 124 1 226 330 9 19 chr12 114678603 114678709 -29107746 + L2 LINE L2 3184 3288 -25 352 279 0 0 chr12 114679054 114679140 -29107315 + L2 LINE L2 3187 3272 0 3388 139 29 42 chr12 114679407 114679932 -29106523 + L1MB8 LINE L1 5494 6009 -169 2107 150 0 10 chr12 114679932 114680238 -29106217 - AluSx SINE Alu -9 303 1 3388 139 29 42 chr12 114680238 114680401 -29106054 + L1MB8 LINE L1 6009 6173 -5 210 211 39 39 chr12 114680401 114680523 -29105932 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 2519 158 19 0 chr12 114680543 114680961 -29105494 - MSTB LTR MaLR 0 426 1 28 0 0 0 chr12 114681139 114681167 -29105288 + AT_rich Low_complexity Low_complexity 1 28 0 630 26 0 0 chr12 114681229 114681305 -29105150 + (TG)n Simple_repeat Simple_repeat 1 76 0 475 205 17 34 chr12 114681305 114681422 -29105033 + L1ME4a LINE L1 5961 6075 -46 468 273 122 17 chr12 114681883 114681987 -29104468 - MIR SINE MIR -41 221 129 180 0 0 0 chr12 114681987 114682007 -29104448 + (GA)n Simple_repeat Simple_repeat 1 20 0 468 273 122 17 chr12 114682007 114682074 -29104381 - MIR SINE MIR -133 129 32 2021 148 0 7 chr12 114682184 114682482 -29103973 + AluJo SINE Alu 1 296 -16 208 250 0 0 chr12 114682521 114682565 -29103890 + MIR SINE MIR 102 145 -63 517 293 0 0 chr12 114683390 114683530 -29102925 - MIR SINE MIR -70 192 53 220 238 0 0 chr12 114684756 114684798 -29101657 + L2 LINE L2 3226 3267 -5 198 211 140 0 chr12 114684819 114684876 -29101579 + MIR SINE MIR 108 150 -58 842 270 115 51 chr12 114684928 114685442 -29101013 + MLT1H LTR MaLR 3 549 0 219 233 138 35 chr12 114686148 114686264 -29100191 - MIR SINE MIR -12 250 123 2188 163 94 15 chr12 114686514 114686980 -29099475 + MLT1D LTR MaLR 3 505 0 227 206 0 82 chr12 114687172 114687245 -29099210 - MIR SINE MIR -132 130 64 726 133 0 0 chr12 114687260 114687365 -29099090 + AluJb SINE Alu 9 113 -199 274 0 0 0 chr12 114687365 114687398 -29099057 + MLT2A1 LTR ERVL 2 34 -419 1633 117 78 23 chr12 114687517 114687824 -29098631 + MLT2A1 LTR ERVL 120 443 -1 1131 176 32 5 chr12 114687824 114688012 -29098443 + AluJb SINE Alu 107 299 -13 446 252 16 16 chr12 114688567 114688690 -29097765 - MIR SINE MIR -36 226 104 310 268 24 32 chr12 114689032 114689155 -29097300 + MIR SINE MIR 23 144 -118 257 317 139 0 chr12 114689151 114689252 -29097203 + L2 LINE L2 3158 3272 0 * 515 256 83 6 chr12 114689717 114689895 -29096560 + MIR SINE MIR 30 206 -28 370 243 118 41 chr12 114690274 114690443 -29096012 + MLT1J2 LTR MaLR 66 247 -203 240 269 39 13 chr12 114690519 114690597 -29095858 + MLT1J1 LTR MaLR 367 446 0 340 273 82 0 chr12 114690600 114690710 -29095745 - MIR3 SINE MIR -54 154 36 385 274 84 39 chr12 114691232 114691355 -29095100 - MER5A DNA MER1_type -2 187 52 2508 70 3 0 chr12 114691355 114691657 -29094798 + AluY SINE Alu 1 303 -8 385 274 84 39 chr12 114691657 114691712 -29094743 - MER5A DNA MER1_type -137 52 1 734 281 24 5 chr12 114691921 114692131 -29094324 - MIR SINE MIR 0 262 49 231 269 30 0 chr12 114692156 114692223 -29094232 - MIR SINE MIR -108 154 86 379 241 0 0 chr12 114692281 114692364 -29094091 + MIR SINE MIR 109 191 -71 203 191 0 132 chr12 114692414 114692482 -29093973 - MIR3 SINE MIR -36 172 114 293 354 75 19 chr12 114692486 114692647 -29093808 - L2 LINE L2 -1 3271 3102 245 254 8 60 chr12 114693280 114693414 -29093041 + L1ME LINE L1 5216 5342 -804 245 268 215 4 chr12 114693646 114693907 -29092548 + L1ME LINE L1 5590 5905 -216 480 291 73 51 chr12 114694733 114695049 -29091406 + L2 LINE L2 2913 3235 -37 731 283 73 0 chr12 114695096 114695301 -29091154 - MIR SINE MIR -35 227 8 264 328 83 16 chr12 114695320 114695512 -29090943 - MIR SINE MIR -29 233 29 312 161 25 42 chr12 114695555 114695673 -29090782 + GA-rich Low_complexity Low_complexity 4 119 0 394 230 122 43 chr12 114695826 114695965 -29090490 - MIR3 SINE MIR -38 170 21 319 211 28 0 chr12 114696009 114696080 -29090375 - MIR SINE MIR -63 145 73 2290 113 50 19 chr12 114696083 114696447 -29090008 - THE1C LTR MaLR 0 375 1 807 222 61 11 chr12 114696527 114696707 -29089748 + MER5A DNA MER1_type 1 189 0 490 239 31 15 chr12 114696768 114696898 -29089557 + MIR SINE MIR 4 135 -127 496 168 20 42 chr12 114696909 114697313 -29089142 + GA-rich Low_complexity Low_complexity 1 395 0 270 205 19 45 chr12 114697348 114697504 -29088951 + GA-rich Low_complexity Low_complexity 1 152 0 264 333 16 0 chr12 114698109 114698238 -29088217 + MER117 DNA MER1_type 33 163 -34 251 234 223 32 chr12 114698696 114698790 -29087665 - L2 LINE L2 -1 3271 3160 2044 119 6 35 chr12 114698809 114699128 -29087327 - AluSx SINE Alu 0 312 3 1715 172 16 10 chr12 114699201 114699509 -29086946 + AluSx SINE Alu 1 310 -2 2189 174 74 41 chr12 114699585 114700074 -29086381 + MLT1D LTR MaLR 1 505 0 549 232 197 15 chr12 114700095 114700293 -29086162 + MIR SINE MIR 21 254 -8 201 250 241 19 chr12 114700446 114700554 -29085901 + L2 LINE L2 2717 2848 -466 191 282 139 28 chr12 114700611 114700827 -29085628 + L2 LINE L2 3005 3313 0 282 235 141 0 chr12 114701664 114701749 -29084706 - MIR SINE MIR -79 129 33 181 351 19 62 chr12 114701802 114702010 -29084445 + L2 LINE L2 2851 3049 -223 539 146 13 0 chr12 114702134 114702235 -29084220 - MSTA LTR MaLR -329 103 1 332 164 0 0 chr12 114702515 114702582 -29083873 - L1MC4 LINE L1 0 8042 7976 280 199 45 23 chr12 114702588 114702764 -29083691 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 202 189 85 0 chr12 114702812 114702918 -29083537 + (TA)n Simple_repeat Simple_repeat 2 116 0 271 258 45 0 chr12 114703958 114704024 -29082431 - L2 LINE L2 -39 3274 3206 310 288 8 56 chr12 114704028 114704153 -29082302 + MIR SINE MIR 34 152 -110 1677 92 48 4 chr12 114704285 114704512 -29081943 + AluSg/x SINE Alu 72 308 -4 716 145 176 0 chr12 114704643 114704774 -29081681 - MER5A DNA MER1_type -35 154 1 425 275 152 12 chr12 114704805 114704976 -29081479 + MIR SINE MIR 49 243 -19 270 254 0 0 chr12 114705411 114705470 -29080985 + MIR SINE MIR 81 139 -69 1331 161 5 14 chr12 114705482 114705693 -29080762 + AluJo SINE Alu 1 209 -103 192 238 0 0 chr12 114705873 114705936 -29080519 + G-rich Low_complexity Low_complexity 1 63 0 200 256 0 24 chr12 114706033 114706115 -29080340 + G-rich Low_complexity Low_complexity 2 81 0 268 260 17 33 chr12 114706169 114706350 -29080105 + G-rich Low_complexity Low_complexity 2 179 0 574 288 43 62 chr12 114708955 114709037 -29077418 + MIR SINE MIR 7 89 -173 1461 261 102 18 chr12 114709037 114709490 -29076965 - LTR16C LTR ERVL 0 491 1 574 288 43 62 chr12 114709490 114709664 -29076791 + MIR SINE MIR 89 258 -4 1071 295 94 20 chr12 114711193 114711574 -29074881 - MLT1K LTR MaLR -24 564 138 4218 84 0 12 chr12 114711574 114712133 -29074322 + MER41A LTR ERV1 3 554 0 1071 295 94 20 chr12 114712133 114712239 -29074216 - MLT1K LTR MaLR -450 138 41 306 271 49 33 chr12 114712361 114712483 -29073972 - MIR SINE MIR -109 153 30 295 250 0 11 chr12 114712971 114713059 -29073396 + L1ME4a LINE L1 5614 5700 -421 2215 107 3 3 chr12 114713123 114713414 -29073041 + AluSx SINE Alu 9 299 -13 575 138 0 0 chr12 114713519 114713606 -29072849 + AluJo SINE Alu 211 297 -15 1764 202 96 52 chr12 114713650 114714151 -29072304 + MLT1F LTR MaLR 11 533 -9 208 304 72 0 chr12 114714967 114715036 -29071419 + MER91C DNA MER1_type 31 104 -36 * 601 221 38 0 chr12 114715033 114715164 -29071291 + MIR SINE MIR 116 251 -11 455 297 36 5 chr12 114715404 114715599 -29070856 - L1MC/D LINE L1 -2023 5785 5585 357 333 10 0 chr12 114716550 114716646 -29069809 - L2 LINE L2 -3 3310 3214 359 181 97 0 chr12 114716646 114716718 -29069737 + Tigger5 DNA MER2_type 1 79 -2244 306 290 57 40 chr12 114716791 114716915 -29069540 + L1ME4a LINE L1 5951 6076 -45 234 294 73 7 chr12 114716922 114717058 -29069397 + L1ME4a LINE L1 5815 5959 -162 1933 151 0 33 chr12 114717184 114717489 -29068966 + AluJb SINE Alu 1 295 -17 1057 142 0 0 chr12 114718771 114718912 -29067543 - AluJb SINE Alu -171 141 1 444 82 0 0 chr12 114718938 114718999 -29067456 + (TA)n Simple_repeat Simple_repeat 1 61 0 240 327 47 33 chr12 114719018 114719168 -29067287 - L1ME LINE L1 -211 5910 5759 574 172 16 0 chr12 114719796 114719924 -29066531 + G-rich Low_complexity Low_complexity 1 130 0 321 244 16 97 chr12 114720041 114720188 -29066267 - MIR SINE MIR -65 143 35 817 299 72 52 chr12 114720350 114720759 -29065696 + L2 LINE L2 2485 2919 -394 1590 160 24 35 chr12 114720759 114721046 -29065409 + AluJo SINE Alu 18 301 -11 817 299 72 52 chr12 114721046 114721232 -29065223 + L2 LINE L2 2919 3100 -213 711 299 66 5 chr12 114721695 114721906 -29064549 - MIR SINE MIR -31 231 8 265 327 0 0 chr12 114722526 114722639 -29063816 + (TG)n Simple_repeat Simple_repeat 2 114 0 2227 120 0 10 chr12 114722944 114723244 -29063211 - AluSx SINE Alu -7 305 9 331 267 48 52 chr12 114723550 114723760 -29062695 + MLT1J2 LTR MaLR 265 450 0 200 302 0 0 chr12 114723817 114723870 -29062585 + MIR3 SINE MIR 150 202 -6 665 224 28 0 chr12 114724303 114724446 -29062009 + MIR SINE MIR 38 184 -78 612 158 0 0 chr12 114725480 114725594 -29060861 + G-rich Low_complexity Low_complexity 4 117 0 1713 259 52 18 chr12 114726592 114727804 -29058651 + L1MC4 LINE L1 6502 7902 -140 389 289 135 6 chr12 114727842 114727998 -29058457 - MIR SINE MIR -1 261 86 266 337 116 0 chr12 114728006 114728101 -29058354 - L2 LINE L2 -5 3267 3162 293 316 29 63 chr12 114728216 114728358 -29058097 - L2 LINE L2 -463 2851 2715 2062 136 0 29 chr12 114728358 114728667 -29057788 - AluSx SINE Alu -12 300 1 293 316 29 63 chr12 114728667 114728698 -29057757 - L2 LINE L2 -599 2715 2684 1268 160 15 0 chr12 114729204 114729410 -29057045 + MER3 DNA MER1_type 1 209 0 324 274 42 116 chr12 114730178 114730419 -29056036 + L2 LINE L2 2472 2694 -620 789 293 124 27 chr12 114730420 114730758 -29055697 - MLT1I LTR MaLR 0 409 39 411 304 17 0 chr12 114730758 114730873 -29055582 - MIR3 SINE MIR -17 191 75 376 351 74 0 chr12 114730959 114731107 -29055348 - L2 LINE L2 -1 3271 3113 1947 121 9 50 chr12 114731180 114731502 -29054953 - AluSq SINE Alu -4 309 1 184 300 0 0 chr12 114731762 114731802 -29054653 + L2 LINE L2 3232 3271 -1 1804 119 9 95 chr12 114731813 114732150 -29054305 + AluY SINE Alu 1 308 -3 1326 231 75 46 chr12 114732432 114732844 -29053611 + LTR16C LTR ERVL 68 491 0 1777 174 10 7 chr12 114733470 114733763 -29052692 - AluJo SINE Alu -18 294 1 390 212 200 46 chr12 114733977 114734172 -29052283 + MIR SINE MIR 15 246 -16 3236 150 72 16 chr12 114734393 114734972 -29051483 + LTR9 LTR ERV1 1 612 0 570 214 207 63 chr12 114735031 114735316 -29051139 - MLT1D LTR MaLR -134 333 8 200 329 224 0 chr12 114735438 114735523 -29050932 + L2 LINE L2 3168 3271 -1 627 195 175 0 chr12 114736514 114736668 -29049787 - MER5A DNA MER1_type 0 189 9 377 278 16 63 chr12 114736816 114736942 -29049513 + MIR3 SINE MIR 88 207 -1 1785 274 73 6 chr12 114737010 114737560 -29048895 + MLT1K LTR MaLR 2 588 0 263 269 97 11 chr12 114737677 114737770 -29048685 - MIR SINE MIR -62 146 46 199 247 202 0 chr12 114737996 114738085 -29048370 - MIR3 SINE MIR -3 205 99 1779 165 47 41 chr12 114738145 114738303 -29048152 + MLT1A1 LTR MaLR 1 157 -208 2100 140 0 0 chr12 114738303 114738595 -29047860 + AluSx SINE Alu 1 292 -20 1779 165 47 41 chr12 114738595 114738799 -29047656 + MLT1A1 LTR MaLR 157 365 0 2296 85 3 7 chr12 114738873 114739168 -29047287 - AluSp SINE Alu -19 294 1 2186 97 38 50 chr12 114739832 114740173 -29046282 + MER1B DNA MER1_type 1 337 0 277 197 288 15 chr12 114740185 114740251 -29046204 + L2 LINE L2 3208 3291 -22 452 271 174 89 chr12 114740319 114740825 -29045630 - MLT1H LTR MaLR 0 549 1 595 332 26 13 chr12 114741000 114741266 -29045189 - MER102b DNA MER1_type -1087 341 69 1668 188 0 0 chr12 114741266 114741532 -29044923 + AluJo SINE Alu 1 266 -46 595 332 26 13 chr12 114741532 114741569 -29044886 - MER102b DNA MER1_type -1359 69 34 393 200 29 0 chr12 114741678 114741748 -29044707 + L2 LINE L2 3168 3239 -33 253 258 32 0 chr12 114741754 114741816 -29044639 + GA-rich Low_complexity Low_complexity 1 64 0 1688 159 30 71 chr12 114741874 114742041 -29044414 + MLT1B LTR MaLR 11 183 -207 2415 108 33 25 chr12 114742041 114742402 -29044053 + THE1B LTR MaLR 1 364 0 1688 159 30 71 chr12 114742402 114742630 -29043825 + MLT1B LTR MaLR 183 390 0 444 223 50 50 chr12 114742695 114742834 -29043621 - MIR SINE MIR -50 212 74 560 308 127 16 chr12 114743016 114743393 -29043062 + LTR16C LTR ERVL 72 490 -1 3119 43 3 0 chr12 114743710 114744085 -29042370 - L1PA5 LINE L1 0 6154 5779 606 198 16 55 chr12 114744103 114744285 -29042170 + L1P LINE L1 4861 5035 -1111 3193 156 29 4 chr12 114744295 114744586 -29041869 + L1PA16 LINE L1 4706 4988 -1178 2123 138 0 0 chr12 114744586 114744882 -29041573 - AluSx SINE Alu -16 296 1 3193 156 29 4 chr12 114744882 114745645 -29040810 + L1PA16 LINE L1 4988 5780 -386 2057 162 0 0 chr12 114745663 114745965 -29040490 + AluJb SINE Alu 1 302 -10 347 157 14 0 chr12 114745974 114746044 -29040411 + GA-rich Low_complexity Low_complexity 4 74 0 2664 128 0 0 chr12 114746055 114746444 -29040011 + L1PA16 LINE L1 5769 6157 -9 390 273 157 55 chr12 114746455 114746810 -29039645 + L1ME LINE L1 5272 5687 -434 2198 100 38 0 chr12 114746810 114747101 -29039354 + AluSx SINE Alu 3 304 -8 390 273 157 55 chr12 114747101 114747158 -29039297 + L1ME LINE L1 5687 5737 -384 582 326 79 18 chr12 114748184 114748576 -29037879 + MLT1K LTR MaLR 160 575 -13 347 272 155 0 chr12 114749028 114749131 -29037324 - MIR SINE MIR -1 261 143 338 200 12 25 chr12 114749228 114749308 -29037147 + MLT1K LTR MaLR 187 265 -323 207 339 115 15 chr12 114749681 114749811 -29036644 - MIR SINE MIR -118 144 2 1036 281 132 29 chr12 114750109 114750330 -29036125 + L2 LINE L2 2414 2611 -661 1457 255 99 27 chr12 114750330 114750816 -29035639 + LTR33A LTR ERVL 3 523 0 1036 281 132 29 chr12 114750816 114751308 -29035147 + L2 LINE L2 2611 3224 -48 2676 197 9 60 chr12 114751308 114751892 -29034563 - MLT2B3 LTR ERVL 0 554 1 1036 281 132 29 chr12 114751892 114751947 -29034508 + L2 LINE L2 3224 3272 0 255 297 33 0 chr12 114752009 114752100 -29034355 - LTR16A1 LTR ERVL 0 457 364 328 281 64 41 chr12 114752411 114752582 -29033873 + MER20B DNA MER1_type 43 217 -566 563 207 18 0 chr12 114752587 114752698 -29033757 - MIR3 SINE MIR -54 154 42 569 185 134 8 chr12 114753582 114753701 -29032754 - L2 LINE L2 0 3313 3180 1980 151 0 7 chr12 114753744 114754042 -29032413 + AluSx SINE Alu 1 296 -16 2540 48 0 3 chr12 114754603 114754898 -29031557 + AluY SINE Alu 1 294 -17 2181 94 7 17 chr12 114755234 114755531 -29030924 + AluJo SINE Alu 1 294 -18 372 293 23 58 chr12 114755771 114755810 -29030645 - MIR SINE MIR -31 231 192 1835 154 0 35 chr12 114755810 114756121 -29030334 - AluJo SINE Alu -12 300 1 372 293 23 58 chr12 114756121 114756255 -29030200 - MIR SINE MIR -70 192 64 967 230 211 17 chr12 114756291 114756730 -29029725 + L2 LINE L2 2741 3264 -49 336 214 76 99 chr12 114757515 114757646 -29028809 + L1MC4a LINE L1 6058 6185 -1623 255 182 0 55 chr12 114757654 114757709 -29028746 + MER5A DNA MER1_type 7 58 -131 1039 179 0 12 chr12 114757736 114757909 -29028546 + AluSg/x SINE Alu 128 298 -12 540 195 115 123 chr12 114757909 114758170 -29028285 - L1MD3 LINE L1 -12 7983 7725 * 876 259 111 3 chr12 114758164 114758461 -29027994 - L1MC4 LINE L1 -231 7811 7483 1880 148 52 3 chr12 114758617 114758908 -29027547 + AluJb SINE Alu 1 305 -7 1944 165 0 16 chr12 114759388 114759691 -29026764 + AluJb SINE Alu 1 298 -14 2394 113 10 15 chr12 114759701 114759842 -29026613 + L1MB3 LINE L1 5796 5936 -247 3330 119 40 2 chr12 114759842 114760321 -29026134 - LOR1a LTR ERV1 0 497 1 2394 113 10 15 chr12 114760321 114760568 -29025887 + L1MB3 LINE L1 5936 6182 -1 206 188 21 0 chr12 114760927 114760975 -29025480 + L2 LINE L2 3265 3313 0 1050 110 12 23 chr12 114761429 114761602 -29024853 + LTR9 LTR ERV1 442 612 0 1342 126 0 0 chr12 114761700 114761899 -29024556 + HUERS-P3 LTR ERV1 8720 8918 -1 2521 155 92 14 chr12 114761899 114762390 -29024065 + LTR9 LTR ERV1 1 529 -83 4105 171 4 7 chr12 114762406 114763158 -29023297 + L1MA4 LINE L1 5551 6300 0 469 158 63 0 chr12 114763165 114763260 -29023195 - MLT1C LTR MaLR -366 101 1 576 265 92 16 chr12 114763271 114763456 -29022999 + MIR SINE MIR 6 204 -58 244 281 198 0 chr12 114763451 114763547 -29022908 - L2 LINE L2 0 3313 3199 * 1884 144 0 3 chr12 114763592 114763923 -29022532 + AluSx SINE Alu 1 330 0 1519 148 44 30 chr12 114764476 114764774 -29021681 + L1MB7 LINE L1 5877 6178 -6 2005 197 97 24 chr12 114765603 114766096 -29020359 + MLT1F LTR MaLR 7 535 -7 770 263 92 5 chr12 114766322 114766539 -29019916 + MIR SINE MIR 10 245 -17 218 219 47 62 chr12 114766629 114766693 -29019762 - MER5B DNA MER1_type -87 91 29 536 261 121 19 chr12 114766704 114766961 -29019494 + L1ME3A LINE L1 5647 5929 -241 2043 136 0 23 chr12 114767226 114767528 -29018927 + AluJb SINE Alu 1 295 -17 1229 122 0 0 chr12 114767535 114767699 -29018756 + AluJb SINE Alu 132 295 -17 230 271 43 14 chr12 114767855 114767925 -29018530 + MARNA DNA Mariner 466 537 -49 2617 53 0 0 chr12 114768063 114768367 -29018088 - AluY SINE Alu -7 304 1 533 288 5 11 chr12 114769112 114769296 -29017159 + Charlie8 DNA MER1_type 95 277 -2140 338 274 0 44 chr12 114769481 114769594 -29016861 - MIR SINE MIR -144 118 11 2147 115 0 7 chr12 114769793 114770105 -29016350 + AluSx SINE Alu 1 310 0 916 174 0 0 chr12 114770112 114770250 -29016205 + FRAM SINE Alu 14 151 -25 452 18 18 0 chr12 114770250 114770307 -29016148 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 512 249 6 62 chr12 114770322 114770499 -29015956 - MIR SINE MIR -61 201 35 543 213 80 33 chr12 114770619 114770769 -29015686 - MIR SINE MIR -98 164 8 752 180 0 0 chr12 114770936 114771058 -29015397 + AluJ SINE Alu 11 132 -180 2423 84 0 0 chr12 114771067 114771366 -29015089 + AluSx SINE Alu 1 299 -13 213 121 0 0 chr12 114771375 114771408 -29015047 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 1158 150 0 11 chr12 114771410 114771590 -29014865 + AluJ SINE Alu 120 297 -15 492 300 33 40 chr12 114772694 114772926 -29013529 + MIR SINE MIR 30 260 -2 627 275 54 40 chr12 114773323 114773545 -29012910 + MIR SINE MIR 30 254 -8 381 259 25 105 chr12 114774315 114774554 -29011901 - L2 LINE L2 -223 3049 2830 636 199 19 26 chr12 114774573 114774729 -29011726 - MER20 DNA MER1_type -43 176 22 256 203 240 47 chr12 114774764 114774956 -29011499 - LTR33 LTR ERVL -116 405 177 323 320 52 6 chr12 114778929 114779101 -29007354 + L1MC5 LINE L1 7716 7895 -66 604 309 24 5 chr12 114782550 114782757 -29003698 + MIR SINE MIR 37 247 -15 354 346 29 0 chr12 114783690 114783826 -29002629 - MER5A DNA MER1_type -48 141 2 2146 136 3 0 chr12 114784601 114784909 -29001546 - AluSx SINE Alu -3 309 1 2277 96 3 3 chr12 114785045 114785347 -29001108 + AluSx SINE Alu 1 302 -10 1276 236 155 35 chr12 114785620 114785684 -29000771 + L1MC4 LINE L1 6469 6524 -1518 2150 135 0 3 chr12 114785684 114785988 -29000467 + AluSx SINE Alu 1 303 -9 1276 236 155 35 chr12 114785988 114786129 -29000326 + L1MC4 LINE L1 6524 6647 -1395 222 118 0 0 chr12 114786129 114786163 -29000292 + (CA)n Simple_repeat Simple_repeat 2 35 0 1276 236 155 35 chr12 114786163 114786440 -29000015 + L1MC4 LINE L1 6647 7010 -1032 920 256 69 12 chr12 114786452 114786772 -28999683 + L1MC4 LINE L1 7380 7717 -325 237 303 114 23 chr12 114786783 114786915 -28999540 + L1MC4 LINE L1 7760 7903 -139 2536 61 0 7 chr12 114787419 114787715 -28998740 + AluY SINE Alu 1 294 -17 681 218 46 29 chr12 114788663 114788837 -28997618 + MER20 DNA MER1_type 1 177 -42 1596 140 0 0 chr12 114789600 114789821 -28996634 - AluSq SINE Alu -16 297 77 23 68 0 0 chr12 114789904 114789948 -28996507 + AT_rich Low_complexity Low_complexity 1 44 0 857 198 85 0 chr12 114789974 114790151 -28996304 + Charlie1a DNA MER1_type 5 196 -1259 * 3492 181 132 33 chr12 114790146 114791171 -28995284 + Charlie1a DNA MER1_type 328 1453 -2 347 326 35 7 chr12 114791175 114791245 -28995210 + L1ME4a LINE L1 5974 6041 -80 1571 146 64 58 chr12 114791245 114791540 -28994915 + AluSx SINE Alu 1 297 -15 347 326 35 7 chr12 114791540 114791613 -28994842 + L1ME4a LINE L1 6041 6121 0 347 191 48 67 chr12 114792643 114792748 -28993707 + MIR SINE MIR 41 143 -119 342 305 94 8 chr12 114792922 114793050 -28993405 + L2 LINE L2 3150 3288 -25 203 224 271 0 chr12 114793716 114793801 -28992654 - L2 LINE L2 -31 3282 3175 266 171 148 34 chr12 114794658 114794746 -28991709 - MER103 DNA DNA 0 166 69 722 208 47 58 chr12 114795181 114795552 -28990903 + L1MC5 LINE L1 7458 7941 -20 404 308 82 22 chr12 114796646 114796828 -28989627 + L1ME3A LINE L1 413 605 -5925 324 267 89 73 chr12 114796941 114797271 -28989184 + L1ME3A LINE L1 1723 1945 -4595 22 0 0 0 chr12 114797287 114797309 -28989146 + AT_rich Low_complexity Low_complexity 1 22 0 1186 234 133 71 chr12 114797329 114797976 -28988479 + L1ME3A LINE L1 4893 5498 -1066 1981 113 10 7 chr12 114797976 114798278 -28988177 + AluSq SINE Alu 9 311 -2 1186 234 133 71 chr12 114798278 114798386 -28988069 + L1ME3A LINE L1 5498 5598 -966 2115 85 0 17 chr12 114798386 114798681 -28987774 - AluSg SINE Alu -20 290 1 1520 181 3 43 chr12 114798686 114798990 -28987465 - AluJo SINE Alu -20 292 1 1186 234 133 71 chr12 114798990 114799727 -28986728 + L1ME3A LINE L1 5601 6487 -77 253 254 75 75 chr12 114800078 114800212 -28986243 - MER117 DNA MER1_type -26 171 38 760 229 119 4 chr12 114800228 114800455 -28986000 - MIR SINE MIR -9 253 1 195 271 0 17 chr12 114801020 114801079 -28985376 + MIR SINE MIR 21 78 -130 1551 193 14 0 chr12 114801413 114801708 -28984747 - AluJo SINE Alu -13 299 1 2079 107 0 7 chr12 114802529 114802828 -28983627 + AluSg SINE Alu 1 297 -13 1876 143 0 0 chr12 114803048 114803342 -28983113 - AluY SINE Alu -17 294 1 1938 132 10 10 chr12 114803354 114803664 -28982791 - AluSx SINE Alu -2 310 1 2057 134 0 0 chr12 114803673 114803963 -28982492 - AluSx SINE Alu -22 290 1 704 214 48 0 chr12 114803992 114804137 -28982318 + L1MEd LINE L1 2160 2311 -4229 447 180 0 45 chr12 114804129 114804218 -28982237 + L1MD2 LINE L1 6037 6121 -238 * 689 170 61 14 chr12 114804232 114804379 -28982076 + L1MD2 LINE L1 6194 6347 -12 643 335 30 8 chr12 114805127 114805363 -28981092 - MIR SINE MIR 0 262 22 283 256 0 12 chr12 114805448 114805534 -28980921 + L1ME LINE L1 5668 5752 -369 406 250 27 18 chr12 114806344 114806456 -28979999 + MIR SINE MIR 82 194 -68 1790 155 13 7 chr12 114806577 114806880 -28979575 + AluJb SINE Alu 1 305 -7 906 195 66 9 chr12 114807011 114807237 -28979218 + L1MDa LINE L1 1936 2174 -4366 1453 232 52 31 chr12 114807249 114807424 -28979031 + L1MDa LINE L1 2218 2388 -4152 1897 105 52 7 chr12 114807424 114807710 -28978745 + AluSg SINE Alu 1 299 -11 1453 232 52 31 chr12 114807710 114808290 -28978165 + L1MDa LINE L1 2388 2985 -3555 22 35 0 0 chr12 114808345 114808374 -28978081 + AT_rich Low_complexity Low_complexity 1 29 0 1352 227 67 12 chr12 114808401 114808820 -28977635 + L1MDa LINE L1 2971 3412 -3128 * 3969 217 59 33 chr12 114808801 114810060 -28976395 + L1MDa LINE L1 4136 5426 -1114 1070 167 24 14 chr12 114810093 114810303 -28976152 + L1MD1 LINE L1 6031 6242 0 263 314 127 3 chr12 114810697 114810987 -28975468 + L2 LINE L2 2736 3059 -213 1615 238 95 76 chr12 114811155 114811808 -28974647 + L1M4 LINE L1 3693 4332 -1814 1226 138 85 11 chr12 114811808 114812068 -28974387 + L1MB2 LINE L1 5892 6170 -1 1615 238 95 76 chr12 114812068 114812226 -28974229 + L1M4 LINE L1 4332 4486 -1660 1769 166 0 0 chr12 114812226 114812522 -28973933 + AluJb SINE Alu 1 296 -16 1615 238 95 76 chr12 114812522 114812836 -28973619 + L1M4 LINE L1 4486 4840 -1306 1586 163 14 20 chr12 114812944 114813239 -28973216 - AluJb SINE Alu -17 295 3 210 231 0 0 chr12 114813475 114813514 -28972941 + MIR3 SINE MIR 121 159 -49 1132 75 0 0 chr12 114814050 114814197 -28972258 - AluSg/x SINE Alu -5 307 161 491 328 39 6 chr12 114814380 114814560 -28971895 - MIR SINE MIR -21 241 56 1388 185 20 17 chr12 114814725 114815017 -28971438 + AluJb SINE Alu 1 293 -19 2536 45 0 0 chr12 114815595 114815905 -28970550 + AluY SINE Alu 1 310 -1 226 233 82 55 chr12 114816148 114816221 -28970234 + MIR SINE MIR 71 145 -63 2085 122 3 0 chr12 114816227 114816538 -28969917 + AluSx SINE Alu 1 312 0 702 241 69 10 chr12 114816538 114816741 -28969714 + LTR33 LTR ERVL 1 215 -306 334 298 143 18 chr12 114816819 114816987 -28969468 + LTR33 LTR ERVL 333 521 0 202 337 31 20 chr12 114817066 114817164 -28969291 - MIR SINE MIR -82 180 82 580 257 131 10 chr12 114817336 114817542 -28968913 + MIR SINE MIR 14 244 -18 383 293 58 29 chr12 114818717 114818891 -28967564 + L2 LINE L2 3118 3296 -17 273 290 19 47 chr12 114818911 114819018 -28967437 - MIR SINE MIR -112 150 47 * 300 323 47 31 chr12 114819003 114819130 -28967325 + MIR SINE MIR 28 156 -106 272 250 52 31 chr12 114819898 114819994 -28966461 + MIR SINE MIR 51 148 -60 306 241 102 22 chr12 114820756 114820893 -28965562 - MARNA DNA Mariner -232 354 207 24 32 0 0 chr12 114822321 114822352 -28964103 + AT_rich Low_complexity Low_complexity 1 31 0 558 253 99 45 chr12 114824311 114824513 -28961942 - MIR SINE MIR -30 232 20 307 301 206 0 chr12 114825307 114825453 -28961002 - MIR SINE MIR -3 259 84 27 29 0 0 chr12 114826168 114826202 -28960253 + AT_rich Low_complexity Low_complexity 1 34 0 183 298 0 18 chr12 114826505 114826562 -28959893 + MER5A DNA MER1_type 27 82 -107 * 191 325 105 35 chr12 114826512 114826626 -28959829 - MER5A DNA MER1_type -22 167 46 2038 112 3 0 chr12 114826769 114827065 -28959390 + AluSg SINE Alu 1 297 -13 182 209 360 23 chr12 114828228 114828314 -28958141 + MER5B DNA MER1_type 11 125 -53 420 246 54 23 chr12 114828349 114828479 -28957976 - MIR3 SINE MIR -71 137 4 668 230 0 0 chr12 114828983 114829122 -28957333 + MIR SINE MIR 80 218 -44 1623 142 0 98 chr12 114829136 114829228 -28957227 + AluJo SINE Alu 1 100 -212 4009 117 17 8 chr12 114829228 114829825 -28956630 + LTR43 LTR ERV1 1 602 0 1623 142 0 98 chr12 114829825 114830069 -28956386 + AluJo SINE Alu 100 304 -8 612 271 119 49 chr12 114830153 114830382 -28956073 - MIR SINE MIR -18 244 3 2988 152 14 39 chr12 114830411 114830754 -28955701 - Tigger1 DNA MER2_type 0 2418 2091 2032 101 29 16 chr12 114830754 114831062 -28955393 - AluSx SINE Alu 0 312 1 2988 152 14 39 chr12 114831062 114831230 -28955225 - Tigger1 DNA MER2_type -327 2091 1920 538 158 58 18 chr12 114831231 114831402 -28955053 + CT-rich Low_complexity Low_complexity 3 180 0 1895 154 3 0 chr12 114831404 114831710 -28954745 - AluSx SINE Alu -5 307 1 953 130 232 0 chr12 114831711 114831896 -28954559 - Tigger1 DNA MER2_type -494 1924 1697 1987 108 0 0 chr12 114831898 114832175 -28954280 - AluSx SINE Alu -35 277 1 820 144 0 8 chr12 114832191 114832316 -28954139 - FLAM_C SINE Alu -19 124 1 5298 140 69 20 chr12 114832316 114832644 -28953811 - Tigger1 DNA MER2_type -1442 976 666 2294 93 0 0 chr12 114832644 114832944 -28953511 - AluSg1 SINE Alu -9 300 1 5298 140 69 20 chr12 114832944 114833525 -28952930 - Tigger1 DNA MER2_type -1752 666 22 223 254 0 17 chr12 114833533 114833592 -28952863 + (CTA)n Simple_repeat Simple_repeat 1 58 0 779 287 9 9 chr12 114834159 114834375 -28952080 + MIR SINE MIR 46 261 -1 872 164 0 16 chr12 114834384 114834567 -28951888 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 757 219 127 114 chr12 114834620 114834801 -28951654 + MLT1A2 LTR MaLR 1 178 -196 1546 174 35 0 chr12 114834801 114835083 -28951372 + AluJo SINE Alu 14 305 -7 757 219 127 114 chr12 114835083 114835270 -28951185 + MLT1A2 LTR MaLR 178 374 0 537 125 0 0 chr12 114835270 114835350 -28951105 + (CAT)n Simple_repeat Simple_repeat 2 81 0 789 190 0 0 chr12 114835352 114835531 -28950924 + (CCA)n Simple_repeat Simple_repeat 2 180 0 504 246 0 0 chr12 114835569 114835744 -28950711 + (CCA)n Simple_repeat Simple_repeat 2 176 0 512 235 0 6 chr12 114835757 114836104 -28950351 + (CCA)n Simple_repeat Simple_repeat 1 344 0 308 314 25 17 chr12 114836107 114836225 -28950230 + L1M4 LINE L1 4117 4235 -1911 187 211 272 44 chr12 114836235 114836349 -28950106 + MIR3 SINE MIR 20 159 -49 1773 164 0 16 chr12 114836617 114836921 -28949534 + AluJo SINE Alu 1 299 -13 287 260 59 78 chr12 114836959 114837003 -28949452 - L1MC/D LINE L1 -2034 5774 5731 1980 148 0 0 chr12 114837003 114837314 -28949141 - AluSx SINE Alu -1 311 1 287 260 59 78 chr12 114837314 114837488 -28948967 - L1MC/D LINE L1 -2077 5731 5560 366 276 66 66 chr12 114837644 114837840 -28948615 + L3b LINE CR1 1304 1499 -84 2034 131 3 0 chr12 114837890 114838187 -28948268 - AluJb SINE Alu -14 298 1 266 326 0 11 chr12 114838322 114838411 -28948044 - MIR SINE MIR -82 126 39 255 93 0 0 chr12 114838872 114838915 -28947540 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 634 279 74 0 chr12 114838972 114839162 -28947293 + MIR SINE MIR 51 254 -8 213 130 0 130 chr12 114839364 114839418 -28947037 - MIR SINE MIR -9 253 207 582 271 131 10 chr12 114840422 114840621 -28945834 - MIR SINE MIR -37 225 3 206 247 178 0 chr12 114841338 114841411 -28945044 - MER5B DNA MER1_type -4 174 89 462 248 23 23 chr12 114841484 114841613 -28944842 + MIR SINE MIR 70 198 -64 1698 198 23 59 chr12 114841619 114842058 -28944397 + L1ME1 LINE L1 5694 6116 -50 2030 124 0 0 chr12 114842058 114842409 -28944046 - AluSc SINE Alu 0 309 1 1904 123 13 28 chr12 114842431 114842748 -28943707 - AluJb SINE Alu 0 312 1 565 156 117 62 chr12 114842758 114842886 -28943569 - AluJb SINE Alu -176 136 2 311 176 29 0 chr12 114842886 114842954 -28943501 + L1MA10 LINE L1 6264 6333 -1 278 250 269 0 chr12 114843046 114843154 -28943301 + L2 LINE L2 3164 3300 -13 602 231 55 50 chr12 114843452 114843634 -28942821 + MIR SINE MIR 20 202 -60 280 347 20 10 chr12 114843705 114843803 -28942652 - L2 LINE L2 -26 3287 3189 241 258 25 4 chr12 114843791 114843874 -28942581 - MER5B DNA MER1_type -43 146 51 * 694 229 23 0 chr12 114843870 114844001 -28942454 - FLAM_C SINE Alu -8 135 2 1688 129 50 7 chr12 114844013 114844170 -28942285 - AluJo SINE Alu -22 290 114 315 0 0 0 chr12 114844170 114844205 -28942250 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1688 129 50 7 chr12 114844205 114844325 -28942130 - AluJo SINE Alu -198 114 1 233 178 22 0 chr12 114844325 114844370 -28942085 + MER5B DNA MER1_type 114 159 -19 416 232 30 0 chr12 114844400 114844499 -28941956 - MIR SINE MIR -58 150 49 837 252 97 0 chr12 114845163 114845401 -28941054 + MIR SINE MIR 2 262 0 355 242 0 83 chr12 114845438 114845595 -28940860 - L2 LINE L2 -214 3058 2915 261 184 140 23 chr12 114846407 114846498 -28939957 - MIR SINE MIR -92 116 22 1963 75 37 41 chr12 114847256 114847550 -28938905 + AluSx SINE Alu 1 293 -19 729 163 23 8 chr12 114847937 114848066 -28938389 - FLAM_C SINE Alu -2 131 1 22 0 0 0 chr12 114848779 114848801 -28937654 + GC_rich Low_complexity Low_complexity 1 22 0 335 328 47 0 chr12 114849402 114849530 -28936925 + L2 LINE L2 3133 3266 -6 504 285 30 6 chr12 114849545 114849710 -28936745 - MIR SINE MIR 0 262 94 2193 102 0 7 chr12 114850004 114850309 -28936146 + AluSx SINE Alu 1 303 -9 264 300 67 0 chr12 114850832 114850922 -28935533 - MIR SINE MIR -73 135 40 1828 158 10 3 chr12 114851115 114851425 -28935030 + AluJb SINE Alu 1 312 0 1119 128 128 5 chr12 114851502 114851698 -28934757 + AluJo SINE Alu 1 220 -92 238 180 0 20 chr12 114851698 114851748 -28934707 + Alu SINE Alu 86 134 -168 667 203 85 1 chr12 114851824 114852003 -28934452 - MIR SINE MIR -37 225 33 288 207 25 0 chr12 114852009 114852130 -28934325 + (CA)n Simple_repeat Simple_repeat 2 125 0 583 186 23 8 chr12 114852146 114852551 -28933904 + (CA)n Simple_repeat Simple_repeat 1 411 0 283 269 186 36 chr12 114852811 114852978 -28933477 + MIR SINE MIR 44 235 -27 515 132 11 0 chr12 114853203 114853294 -28933161 + (CA)n Simple_repeat Simple_repeat 2 93 0 269 175 48 0 chr12 114853475 114853538 -28932917 + MIR SINE MIR 81 146 -62 240 305 38 9 chr12 114853642 114853747 -28932708 - MIR3 SINE MIR -53 155 48 427 267 52 0 chr12 114853781 114853897 -28932558 + MIR SINE MIR 69 190 -72 180 0 0 0 chr12 114854300 114854320 -28932135 + (CA)n Simple_repeat Simple_repeat 1 20 0 270 212 45 23 chr12 114854331 114854463 -28931992 + (CA)n Simple_repeat Simple_repeat 2 136 0 200 151 0 38 chr12 114854928 114854981 -28931474 + CT-rich Low_complexity Low_complexity 1 51 0 207 270 135 0 chr12 114855406 114855495 -28930960 + MIR3 SINE MIR 104 204 -4 251 301 58 0 chr12 114855541 114855644 -28930811 - MIR SINE MIR -117 145 37 300 27 0 0 chr12 114855678 114855715 -28930740 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 223 342 115 48 chr12 114855717 114856135 -28930320 - L2 LINE L2 -14 3258 2813 201 333 69 0 chr12 114856935 114857037 -28929418 - MIR SINE MIR -117 145 37 315 0 0 0 chr12 114857071 114857106 -28929349 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 206 97 0 0 chr12 114857168 114857199 -28929256 + MIR SINE MIR 117 147 -115 1691 215 48 44 chr12 114857300 114857722 -28928733 - MLT1D LTR MaLR -5 500 74 1511 191 17 7 chr12 114857722 114858015 -28928440 + AluJo SINE Alu 1 296 -16 1691 215 48 44 chr12 114858015 114858089 -28928366 - MLT1D LTR MaLR -431 74 2 207 217 33 50 chr12 114858165 114858225 -28928230 + L2 LINE L2 3214 3272 0 543 13 13 26 chr12 114858443 114858521 -28927934 + (CA)n Simple_repeat Simple_repeat 2 78 0 267 310 145 7 chr12 114858602 114858747 -28927708 + MIR3 SINE MIR 42 206 -2 1024 157 23 6 chr12 114858805 114858977 -28927478 - AluJb SINE Alu -17 295 121 195 332 120 34 chr12 114859026 114859375 -28927080 - L2 LINE L2 -13 3300 2922 354 231 99 0 chr12 114859452 114859543 -28926912 + L2 LINE L2 3214 3313 0 483 83 0 0 chr12 114859579 114859651 -28926804 - L1PA5 LINE L1 0 6154 6083 544 55 55 0 chr12 114859653 114859726 -28926729 + L1PA6 LINE L1 5903 5979 -175 220 316 0 0 chr12 114860463 114860520 -28925935 + MIR SINE MIR 83 139 -123 389 262 29 0 chr12 114860529 114860632 -28925823 - L2 LINE L2 -1 3271 3166 * 441 275 83 89 chr12 114860625 114860949 -28925506 + L2 LINE L2 2933 3254 -18 236 245 0 0 chr12 114860961 114861014 -28925441 - MIR3 SINE MIR -50 158 106 481 324 66 48 chr12 114861060 114861455 -28925000 - L2 LINE L2 -5 3308 2907 193 291 165 0 chr12 114861574 114861653 -28924802 + MIR3 SINE MIR 113 204 -4 1644 197 125 49 chr12 114861701 114862116 -28924339 + L1ME2 LINE L1 5514 5979 -185 1564 168 35 3 chr12 114862116 114862402 -28924053 + AluJo SINE Alu 1 295 -17 1644 197 125 49 chr12 114862402 114862513 -28923942 + L1ME2 LINE L1 5979 6080 -84 310 262 55 12 chr12 114862517 114862681 -28923774 + (TTGG)n Simple_repeat Simple_repeat 3 173 0 * 411 264 0 39 chr12 114862623 114862996 -28923459 + (TGGG)n Simple_repeat Simple_repeat 1 358 0 306 256 12 61 chr12 114863003 114863167 -28923288 + (TTAG)n Simple_repeat Simple_repeat 4 159 0 * 435 211 22 65 chr12 114863045 114863230 -28923225 + (TTGG)n Simple_repeat Simple_repeat 2 178 0 269 230 126 0 chr12 114863231 114863318 -28923137 + L1ME3 LINE L1 6063 6160 -2 466 175 19 44 chr12 114863864 114864024 -28922431 + C-rich Low_complexity Low_complexity 5 160 0 219 204 0 0 chr12 114864020 114864069 -28922386 + CT-rich Low_complexity Low_complexity 1 49 0 * 209 235 185 25 chr12 114864069 114864150 -28922305 - L2 LINE L2 -10 3303 3210 1299 153 0 0 chr12 114864150 114864352 -28922103 + AluJb SINE Alu 1 202 -110 249 108 0 0 chr12 114864373 114864410 -28922045 + (A)n Simple_repeat Simple_repeat 1 37 0 1623 165 39 0 chr12 114864420 114864722 -28921733 + AluJb SINE Alu 1 313 0 342 326 51 0 chr12 114864855 114865033 -28921422 - L2 LINE L2 -293 3020 2834 565 195 131 89 chr12 114865262 114865498 -28920957 + AluJb SINE Alu 67 312 0 418 239 65 52 chr12 114865773 114865928 -28920527 + MIR SINE MIR 36 192 -70 2307 86 0 0 chr12 114866006 114866307 -28920148 - AluSx SINE Alu -11 301 1 186 302 16 16 chr12 114866316 114866379 -28920076 + L2 LINE L2 3230 3292 -21 507 273 129 0 chr12 114866808 114867002 -28919453 - MIR SINE MIR -10 252 34 610 274 68 0 chr12 114867301 114867491 -28918964 - L2 LINE L2 -260 3053 2851 1002 146 168 0 chr12 114868178 114868363 -28918092 - MER20 DNA MER1_type -2 217 2 435 219 31 16 chr12 114868448 114868576 -28917879 - L1ME4a LINE L1 -28 6093 5964 581 229 28 7 chr12 114868683 114868827 -28917628 - MIR SINE MIR -5 257 111 216 250 167 21 chr12 114868962 114869058 -28917397 - L2 LINE L2 -8 3264 3155 2094 108 0 7 chr12 114869322 114869617 -28916838 + AluSx SINE Alu 10 302 -10 1449 146 23 31 chr12 114869920 114870181 -28916274 - AluJo SINE Alu -42 270 12 227 352 46 0 chr12 114870611 114870719 -28915736 - MIR SINE MIR -61 147 35 556 238 0 28 chr12 114870969 114871112 -28915343 + MIR SINE MIR 34 172 -90 180 152 0 0 chr12 114871948 114871981 -28914474 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 3228 236 10 18 chr12 114871982 114872228 -28914227 - L1ME2 LINE L1 -10 6154 5908 1824 117 7 24 chr12 114872228 114872518 -28913937 + AluJo SINE Alu 12 296 -16 3228 236 10 18 chr12 114872518 114873046 -28913409 - L1ME2 LINE L1 -256 5908 5386 303 324 141 26 chr12 114873047 114873387 -28913068 + L2 LINE L2 2288 2666 -648 463 130 0 0 chr12 114873669 114873738 -28912717 - AluS SINE Alu -226 86 18 429 345 41 18 chr12 114874015 114874186 -28912269 + MIR SINE MIR 74 248 -14 440 249 122 17 chr12 114874426 114874607 -28911848 + MIR SINE MIR 1 200 -62 643 199 98 9 chr12 114874708 114875040 -28911415 - MER63 DNA MER1_type 0 1062 1 2086 141 0 3 chr12 114875850 114876163 -28910292 - AluJb SINE Alu 0 312 1 2741 169 80 90 chr12 114876343 114877040 -28909415 + LTR8 LTR ERV1 1 690 -1 521 186 52 0 chr12 114877104 114877201 -28909254 + MER81 DNA DNA 13 114 0 913 171 51 60 chr12 114877211 114877427 -28909028 + MER58A DNA MER1_type 1 214 -10 2281 124 9 158 chr12 114877588 114877680 -28908775 + MER31A LTR ERV1 5 109 -376 2308 76 7 0 chr12 114877680 114877982 -28908473 + AluSp SINE Alu 1 304 -9 2281 124 9 158 chr12 114877982 114878431 -28908024 + MER31A LTR ERV1 109 461 -24 2215 102 0 13 chr12 114878431 114878734 -28907721 - AluSx SINE Alu -13 299 1 2281 124 9 158 chr12 114878734 114878756 -28907699 + MER31A LTR ERV1 461 485 0 199 214 243 0 chr12 114879116 114879186 -28907269 - L2 LINE L2 -2 3311 3225 932 94 0 0 chr12 114881529 114881657 -28904798 - AluSg/x SINE Alu -9 301 174 925 199 42 11 chr12 114882458 114882645 -28903810 - MER58A DNA MER1_type 0 224 32 416 257 57 127 chr12 114882645 114883052 -28903403 + MLT1K LTR MaLR 3 405 -183 2213 92 0 7 chr12 114883132 114883449 -28903006 + AluSx SINE Alu 1 312 0 1099 127 18 0 chr12 114883449 114883615 -28902840 + AluSg/x SINE Alu 132 300 -10 2068 108 3 22 chr12 114883617 114883931 -28902524 + AluSg SINE Alu 1 308 -2 376 313 69 14 chr12 114883994 114884178 -28902277 - MIR SINE MIR -35 227 34 387 200 23 85 chr12 114884184 114884314 -28902141 + MLT1K LTR MaLR 177 298 -290 3370 131 80 0 chr12 114884489 114885002 -28901453 + MER41C LTR ERV1 1 554 0 624 210 116 28 chr12 114885057 114885238 -28901217 + MLT1F LTR MaLR 2 198 -369 24 53 0 0 chr12 114885238 114885276 -28901179 + AT_rich Low_complexity Low_complexity 1 38 0 689 219 62 31 chr12 114885288 114885480 -28900975 + MLT1F LTR MaLR 167 364 -178 591 232 74 53 chr12 114885480 114885733 -28900722 - MER4C LTR ERV1 0 465 267 1824 146 32 0 chr12 114885733 114886013 -28900442 + AluSx SINE Alu 1 289 -23 591 232 74 53 chr12 114886013 114886286 -28900169 - MER4C LTR ERV1 -198 267 1 665 215 7 21 chr12 114886301 114886445 -28900010 + MLT1F LTR MaLR 425 566 -1 244 100 20 20 chr12 114886588 114886638 -28899817 + (GA)n Simple_repeat Simple_repeat 1 50 0 254 258 25 75 chr12 114886786 114886906 -28899549 + MLT1K LTR MaLR 440 553 -35 2217 116 0 3 chr12 114887471 114887781 -28898674 + AluSx SINE Alu 1 309 -3 1931 124 0 77 chr12 114887904 114888243 -28898212 - AluSp SINE Alu 0 313 1 1355 156 214 42 chr12 114888854 114889238 -28897217 + LTR7 LTR ERV1 1 450 0 2438 62 0 7 chr12 114889257 114889565 -28896890 - AluY SINE Alu -5 306 1 4222 93 9 0 chr12 114889607 114890156 -28896299 + MER41A LTR ERV1 1 554 0 1572 180 131 30 chr12 114890428 114890890 -28895565 - LTR10A LTR ERV1 -53 556 1 296 319 100 30 chr12 114891050 114891389 -28895066 - L1MC/D LINE L1 -2040 5768 5406 642 307 32 0 chr12 114891868 114892086 -28894369 - MIR SINE MIR -3 259 35 5037 130 12 55 chr12 114892212 114892465 -28893990 - MER4D LTR ERV1 -10 893 631 2226 92 10 10 chr12 114892465 114892768 -28893687 - AluSq SINE Alu -2 311 9 5037 130 12 55 chr12 114892768 114893106 -28893349 - MER4D LTR ERV1 -272 631 280 2159 100 0 0 chr12 114893106 114893395 -28893060 + AluSx SINE Alu 1 289 -23 5037 130 12 55 chr12 114893395 114893532 -28892923 - MER4D LTR ERV1 -623 280 210 4049 107 9 2 chr12 114893532 114894082 -28892373 - MER41A LTR ERV1 0 554 1 5037 130 12 55 chr12 114894082 114894284 -28892171 - MER4D LTR ERV1 -693 210 1 217 250 67 17 chr12 114894284 114894344 -28892111 - MIR SINE MIR -98 164 102 309 222 108 48 chr12 114894559 114894645 -28891810 - L1ME4a LINE L1 0 6121 6042 1949 235 98 17 chr12 114894645 114895126 -28891329 + MLT2B1 LTR ERVL 1 520 0 309 222 108 48 chr12 114895126 114895206 -28891249 - L1ME4a LINE L1 -79 6042 5945 21 0 0 0 chr12 114895439 114895460 -28890995 + AT_rich Low_complexity Low_complexity 1 21 0 629 260 44 18 chr12 114895489 114895716 -28890739 - L2 LINE L2 -198 3074 2842 342 56 14 0 chr12 114895736 114895787 -28890668 - FLAM SINE Alu -9 124 86 192 77 0 0 chr12 114896929 114896955 -28889500 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 191 311 33 33 chr12 114897046 114897058 -28889397 - L2 LINE L2 -1 3271 3260 276 100 0 0 chr12 114897058 114897098 -28889357 + (CTCA)n Simple_repeat Simple_repeat 4 43 0 191 311 33 33 chr12 114897098 114897146 -28889309 - L2 LINE L2 -11 3261 3211 939 206 68 103 chr12 114897146 114897545 -28888910 - MLT1C LTR MaLR 0 390 6 3293 82 2 2 chr12 114897633 114898074 -28888381 + L1PB2 LINE L1 5709 6149 -2 930 159 0 12 chr12 114898086 114898249 -28888206 + FRAM SINE Alu 1 161 -15 2100 128 3 3 chr12 114898253 114898565 -28887890 + AluSx SINE Alu 1 312 0 291 176 306 24 chr12 114898673 114898758 -28887697 - MIR SINE MIR -63 145 37 1045 244 68 73 chr12 114899382 114899820 -28886635 - MLT1L LTR MaLR -59 556 121 2490 68 0 0 chr12 114899822 114900131 -28886324 - AluSg SINE Alu 0 310 2 3300 87 5 11 chr12 114900318 114900765 -28885690 + MLT2A1 LTR ERVL 1 444 0 575 317 97 4 chr12 114901229 114901456 -28884999 + MIR SINE MIR 7 254 -8 264 320 0 0 chr12 114901677 114901755 -28884700 - L2 LINE L2 0 3313 3236 1135 56 14 0 chr12 114901942 114902086 -28884369 + AluSc SINE Alu 156 301 -8 706 299 10 0 chr12 114902435 114902632 -28883823 + MIR SINE MIR 13 211 -51 278 260 120 10 chr12 114902634 114902734 -28883721 - MIR SINE MIR -66 196 86 1505 164 51 11 chr12 114903040 114903315 -28883140 - AluJb SINE Alu -14 298 13 653 310 37 12 chr12 114903339 114903581 -28882874 - MIR SINE MIR -13 249 2 300 219 23 94 chr12 114903581 114903708 -28882747 - MIR3 SINE MIR -90 118 1 382 282 163 53 chr12 114904239 114904352 -28882103 + MIR SINE MIR 14 113 -149 1347 189 92 4 chr12 114904352 114904633 -28881822 + AluJo SINE Alu 1 306 -6 382 282 163 53 chr12 114904633 114904728 -28881727 + MIR SINE MIR 113 245 -17 240 145 177 0 chr12 114904722 114904784 -28881671 + MIR SINE MIR 119 191 -71 * 248 292 0 0 chr12 114904814 114904879 -28881576 + (CATA)n Simple_repeat Simple_repeat 3 67 0 232 319 83 0 chr12 114904937 114905009 -28881446 - L3 LINE CR1 -206 1371 1294 203 212 15 121 chr12 114905029 114905095 -28881360 - L2 LINE L2 -7 3265 3207 782 267 60 73 chr12 114905099 114905304 -28881151 + LTR16B LTR ERVL 3 209 -255 1284 193 128 67 chr12 114905304 114905724 -28880731 - MLT1D LTR MaLR 0 505 51 2321 77 0 7 chr12 114905724 114906034 -28880421 - AluSc SINE Alu -1 308 1 1284 193 128 67 chr12 114906034 114906089 -28880366 - MLT1D LTR MaLR -454 51 1 782 267 60 73 chr12 114906089 114906348 -28880107 + LTR16B LTR ERVL 209 461 -3 552 264 74 80 chr12 114906632 114907022 -28879433 + MLT1K LTR MaLR 181 568 -20 461 270 35 0 chr12 114907084 114907199 -28879256 + MIR SINE MIR 19 137 -125 920 259 21 41 chr12 114907301 114907655 -28878800 - L1ME1 LINE L1 -5 6161 5820 762 150 8 23 chr12 114907693 114907826 -28878629 - FLAM_A SINE Alu 0 133 3 1319 225 54 34 chr12 114907950 114908337 -28878118 + LTR16A1 LTR ERVL 46 440 -17 629 184 0 6 chr12 114908337 114908597 -28877858 + AluJ SINE Alu 28 335 0 1724 319 39 44 chr12 114908613 114909451 -28877004 + HERV16 LTR ERVL 33 866 -4130 1075 306 30 27 chr12 114909667 114909726 -28876729 + HERV16 LTR ERVL 1266 1323 -3673 1968 134 13 0 chr12 114909726 114910024 -28876431 + AluSx SINE Alu 1 302 -10 1075 306 30 27 chr12 114910024 114910597 -28875858 + HERV16 LTR ERVL 1323 1852 -3144 285 185 37 0 chr12 114910602 114910656 -28875799 + HERV16 LTR ERVL 2212 2267 -3497 2663 201 58 42 chr12 114910730 114910790 -28875665 + MLT1E2 LTR MaLR 1 59 -567 1411 229 48 53 chr12 114910790 114911137 -28875318 + MSTD LTR MaLR 1 347 -49 2485 56 0 3 chr12 114911137 114911443 -28875012 + AluY SINE Alu 1 305 -6 1411 229 48 53 chr12 114911443 114911493 -28874962 + MSTD LTR MaLR 347 396 0 2663 201 58 42 chr12 114911493 114912048 -28874407 + MLT1E2 LTR MaLR 59 626 0 2003 291 33 40 chr12 114912228 114912498 -28873957 + HERV16 LTR ERVL 2083 2353 -2643 275 19 37 37 chr12 114912498 114912552 -28873903 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 5217 66 10 4 chr12 114912559 114913252 -28873203 - SVA Other Other -17 1369 673 2003 291 33 40 chr12 114913252 114913666 -28872789 + HERV16 LTR ERVL 2359 2770 -2226 1419 127 104 8 chr12 114913669 114913918 -28872537 - L1MA5A LINE L1 -200 6097 5822 234 108 0 0 chr12 114913906 114913943 -28872512 + L1MA5A LINE L1 6092 6128 -169 * 1457 176 16 35 chr12 114913944 114914224 -28872231 + AluJo SINE Alu 1 285 -27 303 28 0 0 chr12 114914224 114914260 -28872195 + (TAA)n Simple_repeat Simple_repeat 1 36 0 984 119 11 49 chr12 114914261 114914368 -28872087 + L1MA5A LINE L1 6117 6216 -81 1416 180 0 101 chr12 114914368 114914696 -28871759 - AluJo SINE Alu -17 295 1 984 119 11 49 chr12 114914696 114914773 -28871682 + L1MA5A LINE L1 6216 6294 -3 1457 176 16 35 chr12 114914773 114914803 -28871652 + AluJo SINE Alu 284 307 -5 1278 312 31 14 chr12 114914803 114915226 -28871229 + HERV16 LTR ERVL 2802 3231 -2533 2353 180 22 13 chr12 114915259 114915715 -28870740 + MLT1C LTR MaLR 8 467 0 685 296 0 26 chr12 114915741 114915967 -28870488 + HERV16 LTR ERVL 3288 3507 -2147 360 299 87 0 chr12 114916065 114916192 -28870263 + HERV16 LTR ERVL 3720 3857 -1907 2067 166 32 63 chr12 114916210 114916266 -28870189 + MSTB LTR MaLR 1 57 -369 1696 158 68 0 chr12 114916266 114916558 -28869897 + AluJb SINE Alu 1 312 0 2067 166 32 63 chr12 114916558 114916911 -28869544 + MSTB LTR MaLR 57 397 -29 723 104 0 0 chr12 114916911 114917017 -28869438 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 1300 62 12 5 chr12 114917018 114917244 -28869211 + (TTTC)n Simple_repeat Simple_repeat 1 405 0 1947 137 16 0 chr12 114917246 114917552 -28868903 - AluSq SINE Alu -2 311 1 274 128 0 0 chr12 114917552 114917591 -28868864 + MSTB LTR MaLR 390 428 0 1431 334 86 34 chr12 114917609 114917740 -28868715 + HERV16 LTR ERVL 3889 4012 -1752 2122 120 0 3 chr12 114917740 114918039 -28868416 - AluSx SINE Alu -14 298 1 1431 334 86 34 chr12 114918039 114918953 -28867502 + HERV16 LTR ERVL 4012 4988 -776 710 227 68 26 chr12 114919467 114919836 -28866619 + LTR16A1 LTR ERVL 1 408 -49 1436 185 99 102 chr12 114919934 114920022 -28866433 - L1MC5 LINE L1 -305 7656 7569 786 59 49 0 chr12 114920022 114920124 -28866331 - L1PA11 LINE L1 -3 6171 6065 1436 185 99 102 chr12 114920124 114920151 -28866304 - L1MC5 LINE L1 -392 7569 7543 1663 239 51 32 chr12 114920151 114920645 -28865810 - MLT1D LTR MaLR -2 503 1 1436 185 99 102 chr12 114920645 114920742 -28865713 - L1MC5 LINE L1 -418 7543 7447 1621 163 14 10 chr12 114920742 114921031 -28865424 - AluJo SINE Alu -22 290 1 1436 185 99 102 chr12 114921031 114921540 -28864915 - L1MC5 LINE L1 -514 7447 6935 935 215 10 43 chr12 114921929 114922138 -28864317 - MIR SINE MIR -2 260 59 740 295 0 0 chr12 114922139 114922312 -28864143 + MER102b DNA MER1_type 169 341 0 280 270 54 0 chr12 114923085 114923159 -28863296 - MIR SINE MIR -81 127 50 492 247 117 19 chr12 114924377 114924442 -28862013 - MER5B DNA MER1_type 0 178 121 1990 142 0 0 chr12 114924442 114924737 -28861718 - AluJb SINE Alu -17 295 1 492 247 117 19 chr12 114924737 114924833 -28861622 - MER5B DNA MER1_type -57 121 1 557 265 48 7 chr12 114924929 114925076 -28861379 + MIR SINE MIR 3 155 -107 466 265 163 0 chr12 114925198 114925345 -28861110 + MER5A DNA MER1_type 13 183 -6 192 258 34 101 chr12 114925279 114925368 -28861087 + L3b LINE CR1 1467 1549 -34 * 492 262 0 0 chr12 114925548 114925651 -28860804 - MIR SINE MIR -80 182 80 788 236 40 0 chr12 114926483 114926682 -28859773 - MER3 DNA MER1_type -2 207 1 267 268 158 0 chr12 114926698 114926780 -28859675 + MER5A DNA MER1_type 9 103 -86 2451 259 46 34 chr12 114926863 114927008 -28859447 - L1ME LINE L1 -5111 1150 1008 787 203 0 0 chr12 114927008 114927141 -28859314 - FLAM_C SINE Alu 0 133 1 2451 259 46 34 chr12 114927141 114928056 -28858399 - L1ME LINE L1 -5253 1008 12 199 125 143 54 chr12 114928076 114928132 -28858323 - MER5B DNA MER1_type -117 61 1 332 194 90 60 chr12 114928137 114928271 -28858184 - MIR SINE MIR -86 176 39 2187 70 0 11 chr12 114928722 114929007 -28857448 - AluY SINE Alu -9 302 21 224 254 300 31 chr12 114929279 114929409 -28857046 - MIR3 SINE MIR -26 182 18 1761 95 114 8 chr12 114929874 114930137 -28856318 - AluSg SINE Alu -19 291 1 342 169 0 0 chr12 114930329 114930394 -28856061 + GA-rich Low_complexity Low_complexity 2 66 0 195 42 0 0 chr12 114930667 114930691 -28855764 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 254 172 313 0 chr12 114930732 114930831 -28855624 - MIR SINE MIR -25 237 108 213 65 0 0 chr12 114930871 114930902 -28855553 + (T)n Simple_repeat Simple_repeat 1 31 0 1894 187 60 42 chr12 114930902 114931352 -28855103 + MER74C LTR ERVL 3 460 0 237 315 14 0 chr12 114931458 114931531 -28854924 + L2 LINE L2 3202 3275 -38 209 263 18 0 chr12 114931974 114932031 -28854424 + MIR3 SINE MIR 100 157 -51 772 264 54 12 chr12 114932049 114932291 -28854164 + MIR SINE MIR 3 254 -8 317 247 72 10 chr12 114932307 114932404 -28854051 + L1MC4 LINE L1 7206 7308 -734 298 180 66 0 chr12 114932407 114932468 -28853987 - MLT1D LTR MaLR -3 623 559 815 171 0 0 chr12 114932468 114932597 -28853858 + FLAM_C SINE Alu 1 129 -4 419 218 0 0 chr12 114932627 114932705 -28853750 - MLT1D LTR MaLR -59 446 369 * 448 157 34 11 chr12 114932685 114932774 -28853681 + MLT1D LTR MaLR 413 503 -2 493 181 110 0 chr12 114932859 114932986 -28853469 + L1MC4 LINE L1 7900 8040 -2 546 328 46 0 chr12 114933066 114933261 -28853194 - MIR SINE MIR -14 248 45 908 215 5 16 chr12 114933326 114933517 -28852938 + MER5A DNA MER1_type 1 189 0 269 275 119 28 chr12 114933851 114933960 -28852495 + MIR3 SINE MIR 36 154 -54 292 301 10 19 chr12 114934012 114934115 -28852340 - MIR SINE MIR -88 120 19 587 270 137 5 chr12 114934439 114934650 -28851805 + MIR SINE MIR 6 244 -18 1208 194 59 45 chr12 114934769 114935122 -28851333 - MLT2C1 LTR ERVL -2 395 26 381 214 10 41 chr12 114935333 114935431 -28851024 - MLT2C1 LTR ERVL -302 95 1 280 281 22 0 chr12 114935488 114935577 -28850878 - MER113 DNA MER1_type? -136 385 295 434 282 20 93 chr12 114935585 114935705 -28850750 + L2 LINE L2 2785 2912 -401 243 0 0 0 chr12 114935705 114935732 -28850723 + (TA)n Simple_repeat Simple_repeat 1 27 0 4962 26 0 2 chr12 114935732 114936297 -28850158 - L1PA5 LINE L1 -15 6139 5576 434 282 20 93 chr12 114936297 114936542 -28849913 + L2 LINE L2 2910 3126 -187 481 323 39 0 chr12 114936624 114936779 -28849676 + MIR SINE MIR 47 207 -55 207 0 0 0 chr12 114936837 114936860 -28849595 + (CA)n Simple_repeat Simple_repeat 1 23 0 7362 51 0 4 chr12 114937390 114938381 -28848074 - L1PA5 LINE L1 0 6154 5162 307 231 90 0 chr12 114938418 114938496 -28847959 + MIR SINE MIR 90 174 -88 250 241 38 13 chr12 114938527 114938606 -28847849 - L1MC/D LINE L1 -2013 5795 5715 1219 224 12 45 chr12 114938606 114938941 -28847514 - MER46C DNA MER2_type 0 338 15 414 280 47 0 chr12 114939772 114939879 -28846576 - MIR3 SINE MIR -20 188 77 209 272 109 11 chr12 114939942 114940034 -28846421 + MIR SINE MIR 43 143 -65 756 212 17 39 chr12 114940328 114940507 -28845948 + MIR SINE MIR 29 203 -59 1940 98 87 39 chr12 114940546 114940904 -28845551 + THE1C LTR MaLR 1 375 0 294 366 33 13 chr12 114940962 114941115 -28845340 + L2 LINE L2 3109 3264 -8 627 276 177 65 chr12 114941751 114942314 -28844141 + L2 LINE L2 2620 3259 -13 228 163 0 0 chr12 114942366 114942409 -28844046 + (TAA)n Simple_repeat Simple_repeat 3 45 0 230 280 10 16 chr12 114942420 114942496 -28843959 - MIR SINE MIR -63 145 89 338 319 24 60 chr12 114942898 114943149 -28843306 + L2 LINE L2 2818 3059 -213 518 250 234 11 chr12 114943395 114943583 -28842872 + MIR SINE MIR 20 249 -13 237 138 0 121 chr12 114943551 114943609 -28842846 + L2 LINE L2 3263 3313 0 * 278 255 37 125 chr12 114943628 114943844 -28842611 + MIR SINE MIR 20 216 -46 735 196 0 0 chr12 114943859 114944022 -28842433 + (ATG)n Simple_repeat Simple_repeat 3 165 0 205 298 0 0 chr12 114944024 114944071 -28842384 + (TGG)n Simple_repeat Simple_repeat 3 49 0 614 215 0 17 chr12 114944076 114944253 -28842202 + (ATGGTG)n Simple_repeat Simple_repeat 3 176 0 571 219 6 6 chr12 114944235 114944399 -28842056 + (ATG)n Simple_repeat Simple_repeat 1 164 0 * 324 275 11 11 chr12 114944846 114944937 -28841518 - L3 LINE CR1 -193 1384 1294 1326 225 178 26 chr12 114944998 114945065 -28841390 - LTR16C LTR ERVL 0 491 436 189 107 0 0 chr12 114945065 114945093 -28841362 + (TA)n Simple_repeat Simple_repeat 1 28 0 1326 225 178 26 chr12 114945093 114945447 -28841008 - LTR16C LTR ERVL -55 436 6 1997 206 80 44 chr12 114945496 114945995 -28840460 + MLT2B1 LTR ERVL 1 517 -3 2404 151 75 0 chr12 114945999 114946397 -28840058 - MSTA LTR MaLR 0 428 1 398 204 0 68 chr12 114946399 114946487 -28839968 - MIR SINE MIR -63 145 64 297 302 86 7 chr12 114947014 114947153 -28839302 + MIR SINE MIR 100 249 -13 320 276 0 31 chr12 114947155 114947253 -28839202 + CT-rich Low_complexity Low_complexity 5 99 0 1445 248 94 26 chr12 114947279 114947735 -28838720 + LTR16C LTR ERVL 1 487 -4 310 308 55 64 chr12 114947909 114948302 -28838153 + L2 LINE L2 2658 3047 -225 335 267 59 37 chr12 114948386 114948521 -28837934 - MLT1K LTR MaLR -291 297 160 369 332 16 32 chr12 114948936 114949126 -28837329 - MLT1-int LTR MaLR -486 885 699 788 306 19 8 chr12 114949316 114949584 -28836871 - MLT1-int LTR MaLR -771 600 330 513 330 11 11 chr12 114949733 114949912 -28836543 - MIR SINE MIR -79 183 5 734 315 29 39 chr12 114950717 114951101 -28835354 + L2 LINE L2 2817 3196 -117 506 233 175 32 chr12 114951221 114951410 -28835045 + MER20 DNA MER1_type 4 219 0 446 211 61 18 chr12 114951594 114951708 -28834747 - MIR3 SINE MIR -5 203 85 584 257 137 0 chr12 114952222 114952397 -28834058 - MIR SINE MIR -14 248 50 450 237 0 0 chr12 114952428 114952504 -28833951 + MER5A DNA MER1_type 7 82 -107 423 213 111 9 chr12 114952562 114952670 -28833785 - MIR SINE MIR -109 153 35 242 353 0 0 chr12 114952762 114952830 -28833625 - MIR SINE MIR -174 88 21 276 211 0 0 chr12 114952925 114952977 -28833478 + MIR SINE MIR 83 134 -74 276 277 85 11 chr12 114953081 114953175 -28833280 - MIR SINE MIR -14 248 148 466 304 22 0 chr12 114953187 114953325 -28833130 + MIR SINE MIR 111 251 -11 328 311 25 25 chr12 114953315 114953467 -28832988 - MIR3 SINE MIR -79 129 15 * 1043 211 66 91 chr12 114954016 114954261 -28832194 - L1ME2 LINE L1 0 6164 5914 2089 112 23 0 chr12 114954261 114954565 -28831890 - AluSx SINE Alu -1 311 1 1266 186 34 68 chr12 114954570 114954893 -28831562 - AluJo SINE Alu 0 312 1 1043 211 66 91 chr12 114954893 114955048 -28831407 - L1ME2 LINE L1 -254 5910 5768 5901 160 29 8 chr12 114955056 114957092 -28829363 - L1PA16 LINE L1 -9 6157 4073 1476 227 38 3 chr12 114957100 114957444 -28829011 - L1ME2 LINE L1 -435 5729 5374 1078 301 33 6 chr12 114957444 114957776 -28828679 + LTR16C LTR ERVL 149 489 -2 471 279 39 0 chr12 114957778 114957907 -28828548 - LTR33A LTR ERVL -128 395 262 1170 195 195 24 chr12 114957963 114958291 -28828164 + MSTD LTR MaLR 1 384 -12 280 103 0 0 chr12 114958356 114958395 -28828060 + MSTD LTR MaLR 358 396 0 591 256 19 77 chr12 114958396 114958603 -28827852 - LTR33A LTR ERVL -327 196 2 299 295 74 29 chr12 114959075 114959230 -28827225 + MIR3 SINE MIR 13 166 -63 705 256 34 39 chr12 114959374 114959402 -28827053 + L2 LINE L2 2772 2799 -515 2057 231 79 55 chr12 114959402 114959981 -28826474 + MLT1E LTR MaLR 1 593 0 705 256 34 39 chr12 114959981 114960159 -28826296 + L2 LINE L2 2799 2977 -337 229 356 0 29 chr12 114960266 114960370 -28826085 + L2 LINE L2 3204 3304 -9 722 321 137 44 chr12 114960596 114961331 -28825124 + L2 LINE L2 2468 3272 0 234 248 168 40 chr12 114961492 114961617 -28824838 + LTR33 LTR ERVL 211 351 -170 645 292 48 40 chr12 114961907 114962157 -28824298 + MIR SINE MIR 11 262 0 262 151 0 75 chr12 114962164 114962217 -28824238 + MER3 DNA MER1_type 42 90 -119 * 725 182 113 0 chr12 114962182 114962341 -28824114 - MER3 DNA MER1_type -8 201 25 2067 121 0 0 chr12 114962474 114962772 -28823683 - AluSx SINE Alu -14 298 1 327 276 138 66 chr12 114963145 114963326 -28823129 + MIR SINE MIR 14 207 -55 766 175 0 35 chr12 114963402 114963545 -28822910 - FLAM_C SINE Alu -4 139 2 244 330 88 24 chr12 114964273 114964437 -28822018 + MIR SINE MIR 20 191 -51 211 286 0 43 chr12 114965039 114965109 -28821346 + (CAGC)n Simple_repeat Simple_repeat 4 70 0 * 278 295 4 0 chr12 114965059 114965289 -28821166 + (CCAA)n Simple_repeat Simple_repeat 1 231 0 269 241 45 98 chr12 114966298 114966410 -28820045 + MIR SINE MIR 41 146 -62 1575 138 0 47 chr12 114966579 114966876 -28819579 - AluJo SINE Alu -2 310 28 416 308 17 0 chr12 114967553 114967670 -28818785 - MIR3 SINE MIR 0 208 90 2141 97 0 13 chr12 114967764 114968063 -28818392 + AluSc SINE Alu 1 295 -14 267 291 146 10 chr12 114968153 114968256 -28818199 + L2 LINE L2 3197 3313 0 257 217 17 17 chr12 114968928 114968988 -28817467 - L2 LINE L2 -8 3264 3205 1220 193 52 0 chr12 114969013 114969246 -28817209 + MIR SINE MIR 17 261 -1 778 39 33 44 chr12 114969811 114969992 -28816463 + (CA)n Simple_repeat Simple_repeat 2 180 0 541 97 51 29 chr12 114970028 114970203 -28816252 + (CA)n Simple_repeat Simple_repeat 2 180 0 564 122 58 18 chr12 114970257 114970584 -28815871 + (CA)n Simple_repeat Simple_repeat 1 340 0 202 132 38 0 chr12 114970595 114970648 -28815807 + (CA)n Simple_repeat Simple_repeat 1 55 0 724 228 181 14 chr12 114971033 114971248 -28815207 - MIR SINE MIR -10 252 2 525 263 249 10 chr12 114971312 114971521 -28814934 + MER115 DNA AcHobo 12 270 -423 1212 275 26 14 chr12 114971550 114971899 -28814556 + MER115 DNA AcHobo 341 693 0 683 292 92 41 chr12 114971912 114972227 -28814228 + LTR16A LTR ERVL 42 372 -78 657 216 11 65 chr12 114972562 114972747 -28813708 + MLT1H LTR MaLR 130 304 -245 236 275 55 28 chr12 114972781 114972890 -28813565 + MLT1H LTR MaLR 415 526 -16 358 196 205 18 chr12 114973506 114973618 -28812837 + MIR SINE MIR 66 198 -64 264 315 267 16 chr12 114973632 114973782 -28812673 + L2 LINE L2 2923 3034 -279 1998 127 3 0 chr12 114973782 114974074 -28812381 - AluJb SINE Alu -19 293 1 264 315 267 16 chr12 114974074 114974234 -28812221 + L2 LINE L2 3034 3311 -2 453 314 50 36 chr12 114974407 114974627 -28811828 + Charlie8 DNA MER1_type 1 223 -2194 452 178 30 40 chr12 114975370 114975471 -28810984 + MER5A DNA MER1_type 13 112 -77 257 234 26 52 chr12 114975587 114975664 -28810791 + L2 LINE L2 3188 3262 -10 858 173 23 6 chr12 114975705 114975878 -28810577 - MER5B DNA MER1_type -2 176 1 323 285 8 24 chr12 114976192 114976315 -28810140 + L2 LINE L2 2964 3084 -188 261 57 0 0 chr12 114976501 114976536 -28809919 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1755 199 16 81 chr12 114976890 114977382 -28809073 + MER113 DNA MER1_type? 1 460 -61 439 327 78 14 chr12 114977628 114977845 -28808610 + MIR SINE MIR 31 261 -1 261 140 183 54 chr12 114977844 114977937 -28808518 + L2 LINE L2 3151 3255 -17 * 812 243 93 0 chr12 115028029 115028243 -28758212 + MIR SINE MIR 29 262 0 365 242 0 83 chr12 115028280 115028437 -28758018 - L2 LINE L2 -214 3058 2915 273 184 140 23 chr12 115029249 115029340 -28757115 - MIR SINE MIR -92 116 22 1987 75 37 41 chr12 115030098 115030392 -28756063 + AluSx SINE Alu 1 293 -19 734 163 23 8 chr12 115030779 115030908 -28755547 - FLAM_C SINE Alu -2 131 1 22 0 0 0 chr12 115031621 115031643 -28754812 + GC_rich Low_complexity Low_complexity 1 22 0 351 328 47 0 chr12 115032244 115032372 -28754083 + L2 LINE L2 3133 3266 -6 522 285 30 6 chr12 115032387 115032552 -28753903 - MIR SINE MIR 0 262 94 2221 102 0 7 chr12 115032846 115033151 -28753304 + AluSx SINE Alu 1 303 -9 229 329 61 18 chr12 115033616 115033780 -28752675 - MIR3 SINE MIR -14 194 24 1869 158 10 3 chr12 115033957 115034267 -28752188 + AluJb SINE Alu 1 312 0 1139 128 128 5 chr12 115034344 115034540 -28751915 + AluJo SINE Alu 1 220 -92 26 30 0 0 chr12 115034576 115034609 -28751846 + AT_rich Low_complexity Low_complexity 1 33 0 683 224 84 6 chr12 115034666 115034845 -28751610 - MIR SINE MIR -37 225 33 288 207 25 0 chr12 115034851 115034972 -28751483 + (CA)n Simple_repeat Simple_repeat 2 125 0 583 186 23 8 chr12 115034988 115035393 -28751062 + (CA)n Simple_repeat Simple_repeat 1 411 0 318 269 186 36 chr12 115035653 115035820 -28750635 + MIR SINE MIR 44 235 -27 515 132 11 0 chr12 115036045 115036136 -28750319 + (CA)n Simple_repeat Simple_repeat 2 93 0 280 175 48 0 chr12 115036317 115036380 -28750075 + MIR SINE MIR 81 146 -62 264 312 37 9 chr12 115036480 115036589 -28749866 - MIR3 SINE MIR -49 159 48 453 289 47 0 chr12 115036623 115036751 -28749704 + MIR SINE MIR 69 202 -60 180 0 0 0 chr12 115037142 115037162 -28749293 + (CA)n Simple_repeat Simple_repeat 1 20 0 270 212 45 23 chr12 115037173 115037305 -28749150 + (CA)n Simple_repeat Simple_repeat 2 136 0 200 151 0 38 chr12 115037770 115037823 -28748632 + CT-rich Low_complexity Low_complexity 1 51 0 220 270 135 0 chr12 115038248 115038337 -28748118 + MIR3 SINE MIR 104 204 -4 287 284 40 54 chr12 115038338 115038486 -28747969 - MIR SINE MIR -80 182 37 300 27 0 0 chr12 115038520 115038557 -28747898 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 292 364 101 34 chr12 115038559 115038977 -28747478 - L2 LINE L2 -14 3258 2813 234 308 48 48 chr12 115039733 115039879 -28746576 - MIR SINE MIR -80 182 37 315 0 0 0 chr12 115039913 115039948 -28746507 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 206 97 0 0 chr12 115040010 115040041 -28746414 + MIR SINE MIR 117 147 -115 1539 217 50 46 chr12 115040142 115040564 -28745891 - MLT1D LTR MaLR -5 500 74 1554 191 17 7 chr12 115040564 115040857 -28745598 + AluJo SINE Alu 1 296 -16 1539 217 50 46 chr12 115040857 115040931 -28745524 - MLT1D LTR MaLR -431 74 2 212 217 33 50 chr12 115041007 115041067 -28745388 + L2 LINE L2 3214 3272 0 543 13 13 26 chr12 115041285 115041363 -28745092 + (CA)n Simple_repeat Simple_repeat 2 78 0 298 310 145 7 chr12 115041444 115041589 -28744866 + MIR3 SINE MIR 42 206 -2 1049 157 23 6 chr12 115041647 115041819 -28744636 - AluJb SINE Alu -17 295 121 250 341 115 29 chr12 115041868 115042217 -28744238 - L2 LINE L2 -13 3300 2922 368 231 99 0 chr12 115042294 115042385 -28744070 + L2 LINE L2 3214 3313 0 470 83 0 0 chr12 115042421 115042493 -28743962 - L1PA5 LINE L1 0 6154 6083 509 55 55 0 chr12 115042495 115042568 -28743887 + L1PA6 LINE L1 5903 5979 -175 232 316 0 0 chr12 115043305 115043362 -28743093 + MIR SINE MIR 83 139 -123 407 262 29 0 chr12 115043371 115043474 -28742981 - L2 LINE L2 -1 3271 3166 * 483 275 83 89 chr12 115043467 115043791 -28742664 + L2 LINE L2 2933 3254 -18 243 283 0 0 chr12 115043803 115043863 -28742592 - MIR3 SINE MIR -50 158 99 550 324 66 48 chr12 115043902 115044297 -28742158 - L2 LINE L2 -5 3308 2907 206 291 165 0 chr12 115044416 115044495 -28741960 + MIR3 SINE MIR 113 204 -4 1495 197 125 49 chr12 115044543 115044958 -28741497 + L1ME2 LINE L1 5514 5979 -185 1603 168 35 3 chr12 115044958 115045244 -28741211 + AluJo SINE Alu 1 295 -17 1495 197 125 49 chr12 115045244 115045355 -28741100 + L1ME2 LINE L1 5979 6080 -84 310 262 55 12 chr12 115045359 115045523 -28740932 + (TTGG)n Simple_repeat Simple_repeat 3 173 0 * 411 264 0 39 chr12 115045465 115045838 -28740617 + (TGGG)n Simple_repeat Simple_repeat 1 358 0 306 256 12 61 chr12 115045845 115046009 -28740446 + (TTAG)n Simple_repeat Simple_repeat 4 159 0 * 435 211 22 65 chr12 115045887 115046072 -28740383 + (TTGG)n Simple_repeat Simple_repeat 2 178 0 250 230 126 0 chr12 115046073 115046160 -28740295 + L1ME3 LINE L1 6063 6160 -2 466 175 19 44 chr12 115046706 115046866 -28739589 + C-rich Low_complexity Low_complexity 5 160 0 219 204 0 0 chr12 115046862 115046911 -28739544 + CT-rich Low_complexity Low_complexity 1 49 0 * 215 237 184 25 chr12 115046903 115046992 -28739463 - L2 LINE L2 -2 3311 3210 * 1385 153 0 0 chr12 115046992 115047194 -28739261 + AluJb SINE Alu 1 202 -110 249 108 0 0 chr12 115047215 115047252 -28739203 + (A)n Simple_repeat Simple_repeat 1 37 0 1740 163 40 0 chr12 115047262 115047541 -28738914 + AluJb SINE Alu 1 313 0 187 43 0 0 chr12 115047541 115047564 -28738891 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 367 326 51 0 chr12 115047697 115047875 -28738580 - L2 LINE L2 -293 3020 2834 469 195 131 89 chr12 115048104 115048340 -28738115 + AluJb SINE Alu 67 312 0 402 240 83 16 chr12 115048649 115048770 -28737685 + MIR SINE MIR 64 192 -70 2445 84 0 0 chr12 115048850 115049149 -28737306 - AluSx SINE Alu -13 299 1 477 273 129 0 chr12 115049650 115049844 -28736611 - MIR SINE MIR -10 252 34 605 258 73 0 chr12 115050143 115050321 -28736134 - L2 LINE L2 -260 3053 2863 916 146 168 0 chr12 115051020 115051205 -28735250 - MER20 DNA MER1_type -2 217 2 431 219 31 16 chr12 115051290 115051418 -28735037 - L1ME4a LINE L1 -28 6093 5964 578 229 28 7 chr12 115051525 115051669 -28734786 - MIR SINE MIR -5 257 111 210 250 167 21 chr12 115051804 115051900 -28734555 - L2 LINE L2 -8 3264 3155 2222 108 0 7 chr12 115052164 115052459 -28733996 + AluSx SINE Alu 10 302 -10 1549 146 23 31 chr12 115052762 115053023 -28733432 - AluJo SINE Alu -42 270 12 210 352 46 0 chr12 115053453 115053561 -28732894 - MIR SINE MIR -61 147 35 542 217 7 36 chr12 115053816 115053954 -28732501 + MIR SINE MIR 39 172 -90 180 152 0 0 chr12 115054790 115054823 -28731632 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 3178 203 45 53 chr12 115054824 115055070 -28731385 - L1ME2 LINE L1 -10 6154 5908 1945 117 7 24 chr12 115055070 115055360 -28731095 + AluJo SINE Alu 12 296 -16 3178 203 45 53 chr12 115055360 115055888 -28730567 - L1ME2 LINE L1 -256 5908 5386 260 315 141 26 chr12 115055889 115056229 -28730226 + L2 LINE L2 2288 2666 -648 192 308 0 44 chr12 115056264 115056355 -28730100 + L2 LINE L2 2933 3019 -253 435 130 0 0 chr12 115056511 115056580 -28729875 - AluS SINE Alu -227 86 18 420 345 41 18 chr12 115056857 115057028 -28729427 + MIR SINE MIR 74 248 -14 424 224 143 12 chr12 115057268 115057429 -28729026 + MIR SINE MIR 1 182 -80 641 199 98 9 chr12 115057550 115057882 -28728573 - MER63 DNA MER1_type 0 1060 1 2215 141 0 3 chr12 115058692 115059005 -28727450 - AluJb SINE Alu 0 312 1 2418 169 80 90 chr12 115059185 115059882 -28726573 + LTR8 LTR ERV1 1 690 -1 515 172 54 0 chr12 115059950 115060043 -28726412 + MER81 DNA DNA 17 114 0 909 171 51 60 chr12 115060053 115060269 -28726186 + MER58A DNA MER1_type 1 214 -10 2039 125 9 154 chr12 115060430 115060522 -28725933 + MER31A LTR ERV1 5 109 -376 2452 76 7 0 chr12 115060522 115060824 -28725631 + AluSp SINE Alu 1 304 -9 2039 125 9 154 chr12 115060824 115061275 -28725180 + MER31A LTR ERV1 109 468 -17 2357 100 0 13 chr12 115061275 115061576 -28724879 - AluSx SINE Alu -15 297 1 2039 125 9 154 chr12 115061576 115061589 -28724866 + MER31A LTR ERV1 468 481 -4 196 214 243 0 chr12 115061958 115062028 -28724427 - L2 LINE L2 -2 3311 3225 2277 113 7 0 chr12 115064371 115064672 -28721783 - AluSx SINE Alu -9 303 1 268 353 60 0 chr12 115065047 115065163 -28721292 + MIR SINE MIR 134 256 -6 2404 106 0 3 chr12 115065808 115066120 -28720335 - AluSx SINE Alu -1 311 1 1846 163 7 21 chr12 115066196 115066485 -28719970 - AluJo SINE Alu -27 285 1 2103 139 3 0 chr12 115066507 115066802 -28719653 + AluSq SINE Alu 1 296 -17 426 244 8 41 chr12 115066837 115066960 -28719495 - MIR3 SINE MIR -41 167 49 734 285 16 29 chr12 115067132 115067344 -28719111 + MIR SINE MIR 9 219 -43 1910 155 3 16 chr12 115067344 115067476 -28718979 + AluJb SINE Alu 5 137 -175 1989 133 3 37 chr12 115067476 115067798 -28718657 + AluJb SINE Alu 1 311 -1 1910 155 3 16 chr12 115067798 115067969 -28718486 + AluJb SINE Alu 137 304 -8 734 285 16 29 chr12 115067969 115068002 -28718453 + MIR SINE MIR 219 251 -11 414 0 0 0 chr12 115068003 115068049 -28718406 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 206 59 43 chr12 115068492 115068660 -28717795 + MIR SINE MIR 18 193 -67 316 207 0 92 chr12 115068923 115069010 -28717445 - MER81 DNA DNA -35 79 1 1889 142 17 0 chr12 115069113 115069401 -28717054 + AluJo SINE Alu 1 293 -19 180 77 0 0 chr12 115070229 115070255 -28716200 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 488 253 13 23 chr12 115070255 115070404 -28716051 + MIR SINE MIR 35 181 -62 400 207 56 117 chr12 115070854 115070943 -28715512 - MER106A DNA MER1_type -6 230 156 1765 158 48 3 chr12 115070943 115071234 -28715221 - AluJo SINE Alu -8 304 1 400 207 56 117 chr12 115071234 115071323 -28715132 - MER106A DNA MER1_type -80 156 63 221 234 0 0 chr12 115071684 115071731 -28714724 + MIR SINE MIR 98 144 -118 378 42 0 0 chr12 115072074 115072122 -28714333 + (TG)n Simple_repeat Simple_repeat 2 49 0 2020 155 0 3 chr12 115072204 115072500 -28713955 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 115072500 115072528 -28713927 + AT_rich Low_complexity Low_complexity 1 28 0 281 217 261 0 chr12 115072721 115072813 -28713642 + MIR3 SINE MIR 56 171 -37 1903 167 13 0 chr12 115072907 115073206 -28713249 + AluJo SINE Alu 1 303 -9 2407 72 7 13 chr12 115074585 115074891 -28711564 - AluSp SINE Alu -9 304 1 958 210 150 9 chr12 115075192 115075425 -28711030 + MER58B DNA MER1_type 28 293 -48 520 291 170 0 chr12 115075441 115075647 -28710808 - MIR SINE MIR -10 252 12 950 152 18 24 chr12 115075739 115075903 -28710552 - FRAM SINE Alu -14 162 1 2319 122 0 0 chr12 115076470 115076781 -28709674 - AluSx SINE Alu -1 311 1 735 264 26 5 chr12 115076781 115076974 -28709481 - MIR SINE MIR -64 198 2 416 314 104 50 chr12 115077469 115077826 -28708629 + Tigger8 DNA MER2_type 199 574 -92 234 273 176 30 chr12 115079041 115079206 -28707249 - L2 LINE L2 0 3313 3125 391 280 135 5 chr12 115079334 115079459 -28706996 - L2 LINE L2 -458 2856 2749 1388 197 93 0 chr12 115079459 115079769 -28706686 - MER58B DNA MER1_type 0 341 3 391 280 135 5 chr12 115079769 115079850 -28706605 - L2 LINE L2 -565 2749 2623 1045 207 45 123 chr12 115079850 115080067 -28706388 + MLT2D LTR ERVL 1 168 -246 2389 92 3 7 chr12 115080067 115080370 -28706085 + AluSx SINE Alu 4 305 -7 1045 207 45 123 chr12 115080370 115080592 -28705863 + MLT2D LTR ERVL 168 406 -8 239 291 163 7 chr12 115080605 115080746 -28705709 - L2 LINE L2 -703 2611 2449 323 325 49 8 chr12 115083470 115083593 -28702862 - L1ME LINE L1 -438 5683 5556 223 317 79 20 chr12 115084485 115084586 -28701869 - MIR SINE MIR -109 153 47 180 77 0 0 chr12 115084915 115084941 -28701514 + (A)n Simple_repeat Simple_repeat 1 26 0 1794 158 44 10 chr12 115089865 115090163 -28696292 - AluJb SINE Alu -4 308 1 514 295 83 5 chr12 115090222 115090415 -28696040 + MIR SINE MIR 41 248 -14 1182 132 42 0 chr12 115090634 115090823 -28695632 - AluSx SINE Alu -3 307 111 1274 89 0 0 chr12 115091563 115091721 -28694734 + AluSg/x SINE Alu 137 294 -18 219 69 0 0 chr12 115091727 115091756 -28694699 + (T)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr12 115094137 115094163 -28692292 + AT_rich Low_complexity Low_complexity 1 26 0 2075 125 7 13 chr12 115094379 115094684 -28691771 - AluSx SINE Alu -4 308 6 261 191 145 61 chr12 115094710 115094841 -28691614 - L1ME4a LINE L1 -4 6117 5976 9629 41 5 197 chr12 115095036 115096750 -28689705 + SVA Other Other 1 1386 0 22 0 0 0 chr12 115096750 115096772 -28689683 + AT_rich Low_complexity Low_complexity 1 22 0 243 333 83 0 chr12 115097227 115097347 -28689108 - MIR SINE MIR -97 165 36 258 56 0 0 chr12 115097872 115097908 -28688547 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1029 90 0 0 chr12 115097908 115098030 -28688425 - AluSx SINE Alu -190 122 1 258 32 0 0 chr12 115098703 115098734 -28687721 + (GA)n Simple_repeat Simple_repeat 2 32 0 376 227 100 27 chr12 115099106 115099256 -28687199 - L1ME4a LINE L1 -52 6069 5909 2502 75 3 0 chr12 115099854 115100161 -28686294 + AluSp SINE Alu 1 308 -5 846 193 12 1 chr12 115100713 115100883 -28685572 - L1ME1 LINE L1 -1 6183 6007 765 275 128 12 chr12 115100940 115101285 -28685170 + L1ME4a LINE L1 5736 6120 -1 989 122 0 0 chr12 115102017 115102156 -28684299 - AluSg/x SINE Alu -3 309 171 4758 171 34 23 chr12 115102490 115103547 -28682908 + L1MB7 LINE L1 5119 6184 0 21 0 0 0 chr12 115104944 115104965 -28681490 + AT_rich Low_complexity Low_complexity 1 21 0 311 294 189 40 chr12 115105446 115105674 -28680781 + MIR SINE MIR 1 262 0 282 310 70 9 chr12 115106352 115106515 -28679940 + MIR SINE MIR 30 201 -61 477 203 137 76 chr12 115106565 115106762 -28679693 + MIR SINE MIR 20 228 -34 24 32 0 0 chr12 115107173 115107204 -28679251 + AT_rich Low_complexity Low_complexity 1 31 0 254 291 184 0 chr12 115107293 115107396 -28679059 + FLAM_C SINE Alu 9 130 -3 267 208 0 0 chr12 115108132 115108180 -28678275 + U7 snRNA snRNA 1 48 -15 181 246 0 62 chr12 115109137 115109202 -28677253 - MIR SINE MIR -99 163 103 217 282 0 53 chr12 115110578 115110680 -28675775 + A-rich Low_complexity Low_complexity 1 96 -28 180 0 0 0 chr12 115110680 115110700 -28675755 + (TAA)n Simple_repeat Simple_repeat 2 21 0 217 282 0 53 chr12 115110700 115110728 -28675727 + A-rich Low_complexity Low_complexity 96 124 0 1735 155 38 10 chr12 115110735 115111025 -28675430 + AluJo SINE Alu 1 298 -14 441 320 75 50 chr12 115111035 115111441 -28675014 + HAL1b LINE L1 80 504 -844 1689 154 3 18 chr12 115111441 115111747 -28674708 - AluJb SINE Alu 0 302 1 441 320 75 50 chr12 115111747 115111860 -28674595 + HAL1b LINE L1 504 613 -735 13444 117 73 21 chr12 115112286 115113439 -28673016 + Tigger1 DNA MER2_type 1 1093 -1325 1183 38 0 0 chr12 115113439 115113595 -28672860 + L1PA3 LINE L1 6019 6174 0 13444 117 73 21 chr12 115113595 115113965 -28672490 + Tigger1 DNA MER2_type 1093 1442 -976 2125 79 48 17 chr12 115113965 115114257 -28672198 + AluSc SINE Alu 1 301 -8 13444 117 73 21 chr12 115114257 115114905 -28671550 + Tigger1 DNA MER2_type 1442 2286 -132 2196 207 47 87 chr12 115114909 115115758 -28670697 + L1MC5 LINE L1 6717 7531 -430 296 224 49 70 chr12 115115848 115115991 -28670464 + L1ME3A LINE L1 5963 6102 -68 2307 105 0 0 chr12 115116179 115116473 -28669982 + AluSx SINE Alu 6 299 -13 26 50 0 0 chr12 115116699 115116739 -28669716 + AT_rich Low_complexity Low_complexity 1 40 0 2356 78 0 0 chr12 115117443 115117725 -28668730 + AluSx SINE Alu 23 304 -8 21 0 0 0 chr12 115118401 115118422 -28668033 + AT_rich Low_complexity Low_complexity 1 21 0 2345 80 30 0 chr12 115118524 115118876 -28667579 + AluSc SINE Alu 1 361 0 565 270 28 39 chr12 115119414 115119592 -28666863 + MIR SINE MIR 17 192 -70 542 310 94 49 chr12 115119741 115119986 -28666469 - L2 LINE L2 -10 3262 3007 602 313 33 5 chr12 115120191 115120402 -28666053 + MIR SINE MIR 36 252 -10 209 195 24 0 chr12 115120674 115120715 -28665740 + CT-rich Low_complexity Low_complexity 2 43 0 728 188 120 0 chr12 115120716 115120849 -28665606 - FAM SINE Alu -36 149 1 557 284 63 54 chr12 115120906 115121391 -28665064 + L1MC/D LINE L1 1230 1702 -874 522 288 93 48 chr12 115122080 115122823 -28663632 + L1MC/D LINE L1 2407 3190 -3025 2243 126 0 3 chr12 115122823 115123132 -28663323 + AluSg SINE Alu 2 309 -1 522 288 93 48 chr12 115123132 115123187 -28663268 + L1MC/D LINE L1 3190 3241 -2974 479 274 97 36 chr12 115123461 115123709 -28662746 + L1MC/D LINE L1 3578 3840 -2375 714 301 92 28 chr12 115123785 115124220 -28662235 + L1MC/D LINE L1 5367 5829 -2048 418 258 86 26 chr12 115125068 115125219 -28661236 - MIR SINE MIR 0 262 103 1381 119 16 0 chr12 115126993 115127178 -28659277 + AluJo SINE Alu 102 289 -23 2082 110 11 0 chr12 115127187 115127468 -28658987 + AluSx SINE Alu 1 284 -28 28 29 0 0 chr12 115127468 115127503 -28658952 + AT_rich Low_complexity Low_complexity 1 35 0 2224 109 3 0 chr12 115128427 115128721 -28657734 - AluSx SINE Alu -17 295 1 180 111 0 0 chr12 115130900 115130927 -28655528 + (CAAGC)n Simple_repeat Simple_repeat 2 28 0 4076 243 47 34 chr12 115131661 115132747 -28653708 + L1MDa LINE L1 11 1110 -5430 290 316 100 36 chr12 115132874 115133124 -28653331 + L2 LINE L2 2710 2975 -339 774 261 0 0 chr12 115133225 115133443 -28653012 + L1MDa LINE L1 3209 3426 -3114 1727 126 0 0 chr12 115133455 115133685 -28652770 + AluSq SINE Alu 1 230 -83 780 215 43 9 chr12 115133768 115134001 -28652454 + L1MDa LINE L1 3432 3672 -2868 196 345 44 53 chr12 115134405 115134518 -28651937 + MIR SINE MIR 21 132 -76 183 289 99 33 chr12 115134571 115134692 -28651763 - MIR SINE MIR -37 225 97 357 176 0 0 chr12 115134917 115134991 -28651464 + GA-rich Low_complexity Low_complexity 2 75 0 285 273 20 10 chr12 115135010 115135109 -28651346 + GA-rich Low_complexity Low_complexity 1 100 0 385 252 15 10 chr12 115135875 115135996 -28650459 - MIR SINE MIR -66 142 38 1309 161 3 125 chr12 115136002 115136338 -28650117 - AluJo SINE Alu -17 295 1 2247 102 10 0 chr12 115137543 115137672 -28648783 + AluSx SINE Alu 1 127 -185 2228 104 14 3 chr12 115137672 115137969 -28648486 + AluSg SINE Alu 1 300 -10 2247 102 10 0 chr12 115137969 115138134 -28648321 + AluSx SINE Alu 127 298 -14 2396 89 0 0 chr12 115141713 115142016 -28644439 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 115142071 115142093 -28644362 + AT_rich Low_complexity Low_complexity 1 22 0 2024 116 45 0 chr12 115142931 115143223 -28643232 + AluSg SINE Alu 1 305 -5 2116 171 112 7 chr12 115143843 115144270 -28642185 - MLT1F LTR MaLR 0 542 71 539 186 52 122 chr12 115144645 115144817 -28641638 + MER105 DNA DNA 3 162 -42 2456 68 3 0 chr12 115147330 115147625 -28638830 - AluSx SINE Alu -16 296 1 339 352 7 14 chr12 115147650 115147792 -28638663 - MIR3 SINE MIR -63 145 5 255 276 0 11 chr12 115150522 115150609 -28635846 - MIR3 SINE MIR 0 208 123 358 273 100 78 chr12 115152270 115152681 -28633774 + HAL1 LINE L1 28 447 -2060 286 283 40 10 chr12 115152834 115152933 -28633522 + HAL1 LINE L1 747 848 -1659 2162 108 14 0 chr12 115153116 115153404 -28633051 + AluSg SINE Alu 3 294 -16 280 319 64 48 chr12 115153689 115153877 -28632578 + MIR SINE MIR 1 191 -71 349 245 163 0 chr12 115154000 115154098 -28632357 + MIR SINE MIR 41 154 -108 2081 104 66 0 chr12 115154115 115154404 -28632051 + AluSx SINE Alu 1 308 -4 7539 185 69 18 chr12 115154414 115154823 -28631632 + L1MB8 LINE L1 3506 3892 -2286 2215 129 0 0 chr12 115154823 115155133 -28631322 + AluSx SINE Alu 1 310 -2 7539 185 69 18 chr12 115155133 115155520 -28630935 + L1MB8 LINE L1 3892 4258 -1920 2030 124 39 0 chr12 115155520 115155802 -28630653 - AluSx SINE Alu -19 293 1 7539 185 69 18 chr12 115155802 115157381 -28629074 + L1MB8 LINE L1 4258 5754 -424 2436 90 0 0 chr12 115157381 115157680 -28628775 - AluSx SINE Alu -13 299 1 1499 183 38 17 chr12 115157682 115157971 -28628484 - AluJo SINE Alu -15 297 3 7539 185 69 18 chr12 115157971 115158112 -28628343 + L1MB8 LINE L1 5754 6160 -18 548 57 0 0 chr12 115159238 115159308 -28627147 + MER41B LTR ERV1 480 549 -86 2479 82 3 0 chr12 115159475 115159780 -28626675 - AluSc SINE Alu -3 306 1 1717 184 0 22 chr12 115160000 115160315 -28626140 + AluJo SINE Alu 2 309 -3 2369 107 0 0 chr12 115160316 115160615 -28625840 + AluSx SINE Alu 1 299 -13 1958 136 17 7 chr12 115161209 115161511 -28624944 + AluSq SINE Alu 1 305 -8 774 172 0 0 chr12 115161618 115161740 -28624715 + AluJo SINE Alu 1 122 -180 651 115 124 26 chr12 115161740 115161853 -28624602 + AluJo SINE Alu 180 303 -9 367 261 89 76 chr12 115162802 115163027 -28623428 + Tigger8 DNA MER2_type 213 445 -221 2373 72 0 33 chr12 115163027 115163334 -28623121 + AluSc SINE Alu 1 297 -12 367 261 89 76 chr12 115163334 115163411 -28623044 + Tigger8 DNA MER2_type 445 519 -147 1749 124 85 7 chr12 115163418 115163700 -28622755 + AluJb SINE Alu 4 307 -5 718 238 0 41 chr12 115163980 115164152 -28622303 + AluJo SINE Alu 118 282 -30 225 0 0 0 chr12 115164157 115164182 -28622273 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2467 72 10 0 chr12 115164770 115165076 -28621379 + AluSc SINE Alu 1 309 0 22 0 0 0 chr12 115165214 115165236 -28621219 + AT_rich Low_complexity Low_complexity 1 22 0 486 254 57 53 chr12 115165794 115166003 -28620452 - L2 LINE L2 0 3313 3104 412 258 86 56 chr12 115166187 115166455 -28620000 - L2 LINE L2 -434 2880 2605 23 54 0 0 chr12 115166703 115166740 -28619715 + AT_rich Low_complexity Low_complexity 1 37 0 2318 111 0 13 chr12 115166854 115166990 -28619465 + AluSx SINE Alu 1 137 -175 2302 87 0 50 chr12 115166990 115167311 -28619144 + AluY SINE Alu 1 305 -6 2318 111 0 13 chr12 115167311 115167489 -28618966 + AluSx SINE Alu 137 311 -1 2024 133 0 3 chr12 115168821 115169107 -28617348 + AluJb SINE Alu 1 285 -27 180 125 0 0 chr12 115169107 115169139 -28617316 + (CA)n Simple_repeat Simple_repeat 1 32 0 2398 78 3 3 chr12 115169444 115169740 -28616715 - AluY SINE Alu -14 297 2 294 282 0 0 chr12 115169849 115169920 -28616535 - L2 LINE L2 0 3272 3202 231 231 20 16 chr12 115173337 115173407 -28613048 + MIR SINE MIR 86 158 -50 203 178 0 22 chr12 115173969 115174014 -28612441 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 472 311 31 21 chr12 115174310 115174523 -28611932 - MIR SINE MIR -43 219 6 265 105 0 0 chr12 115174719 115174785 -28611670 - AluSg SINE Alu 0 309 244 1918 110 8 4 chr12 115174786 115175050 -28611405 - AluSg SINE Alu -44 266 2 26 30 0 0 chr12 115175053 115175086 -28611369 + AT_rich Low_complexity Low_complexity 1 33 0 2055 64 0 38 chr12 115175093 115175359 -28611096 + AluY SINE Alu 40 295 -16 859 166 0 14 chr12 115175446 115175591 -28610864 + FLAM_C SINE Alu 1 143 0 1158 147 121 17 chr12 115176651 115177375 -28609080 + L1MB8 LINE L1 5131 6144 -34 993 114 60 12 chr12 115177375 115177541 -28608914 + L1MB8 LINE L1 6005 6178 0 1158 147 121 17 chr12 115177541 115177580 -28608875 + L1MB8 LINE L1 6144 6178 0 30 83 0 0 chr12 115180446 115180518 -28605937 + GC_rich Low_complexity Low_complexity 1 72 0 399 324 14 0 chr12 115181333 115181481 -28604974 + MIR3 SINE MIR 30 179 -29 369 184 40 0 chr12 115181677 115181753 -28604702 + MIR SINE MIR 95 173 -89 397 42 0 0 chr12 115181791 115181839 -28604616 - MADE1 DNA Mariner -26 54 7 213 206 32 16 chr12 115182020 115182083 -28604372 + MIR SINE MIR 184 247 -15 1895 142 0 14 chr12 115182094 115182389 -28604066 - AluJb SINE Alu -17 295 5 2619 38 0 0 chr12 115182523 115182813 -28603642 - AluY SINE Alu -21 290 1 434 243 80 75 chr12 115182870 115182970 -28603485 - MIR SINE MIR -8 254 156 1459 184 93 4 chr12 115182970 115183248 -28603207 - AluJo SINE Alu -9 303 1 434 243 80 75 chr12 115183248 115183386 -28603069 - MIR SINE MIR -106 156 15 423 304 15 83 chr12 115183413 115183687 -28602768 + MIR SINE MIR 2 255 -7 2167 96 22 26 chr12 115183708 115184021 -28602434 + AluSx SINE Alu 1 312 0 24 0 0 0 chr12 115184755 115184779 -28601676 + AT_rich Low_complexity Low_complexity 1 24 0 384 137 0 0 chr12 115184970 115185043 -28601412 - L1MD2 LINE L1 0 6359 6287 1097 123 0 13 chr12 115185043 115185197 -28601258 + AluSg/x SINE Alu 137 288 -24 282 56 0 0 chr12 115185197 115185233 -28601222 + (GA)n Simple_repeat Simple_repeat 1 36 0 844 152 8 0 chr12 115185242 115185367 -28601088 + AluJb SINE Alu 1 126 -186 4710 133 17 68 chr12 115185372 115186258 -28600197 - L1MC2 LINE L1 -50 6688 5756 2228 130 0 0 chr12 115186258 115186557 -28599898 - AluSx SINE Alu -13 299 1 4710 133 17 68 chr12 115186557 115186601 -28599854 - L1MC2 LINE L1 -982 5756 5711 2083 125 16 13 chr12 115186606 115186917 -28599538 - AluJo SINE Alu 0 312 1 6515 213 51 72 chr12 115186917 115187402 -28599053 - L1MC2 LINE L1 -1761 4779 4285 715 92 0 67 chr12 115187402 115187522 -28598933 + HY1 scRNA scRNA 1 112 0 6515 213 51 72 chr12 115187522 115187759 -28598696 - L1MC2 LINE L1 -2255 4285 4045 1890 176 10 0 chr12 115187759 115188066 -28598389 - AluJb SINE Alu -2 310 1 6515 213 51 72 chr12 115188066 115188118 -28598337 - L1MC2 LINE L1 -2495 4045 3993 2184 91 0 7 chr12 115188118 115188392 -28598063 - AluSg SINE Alu -38 272 1 6515 213 51 72 chr12 115188392 115188760 -28597695 - L1MC2 LINE L1 -2547 3993 3619 2219 105 7 3 chr12 115188760 115189065 -28597390 - AluSg1 SINE Alu -3 306 1 6515 213 51 72 chr12 115189065 115189296 -28597159 - L1MC2 LINE L1 -2921 3619 3385 2204 140 0 0 chr12 115189296 115189604 -28596851 - AluSx SINE Alu -4 308 1 6515 213 51 72 chr12 115189604 115190114 -28596341 - L1MC2 LINE L1 -3155 3385 2866 1989 135 47 7 chr12 115190114 115190411 -28596044 + AluSx SINE Alu 1 309 -3 6515 213 51 72 chr12 115190411 115190670 -28595785 - L1MC2 LINE L1 -3674 2866 2603 2301 99 10 0 chr12 115190670 115190972 -28595483 - AluSc SINE Alu -4 305 1 6515 213 51 72 chr12 115190972 115191075 -28595380 - L1MC2 LINE L1 -3937 2603 2499 1699 122 111 0 chr12 115191075 115191345 -28595110 - AluSx SINE Alu -12 300 1 6515 213 51 72 chr12 115191345 115191590 -28594865 - L1MC2 LINE L1 -4041 2499 2327 857 112 41 51 chr12 115191626 115191822 -28594633 + L1MDa LINE L1 1280 1473 -5067 663 244 0 0 chr12 115191845 115192013 -28594442 - L1MDa LINE L1 -3136 3404 3237 4007 141 58 47 chr12 115192028 115192401 -28594054 + L1MDa LINE L1 1468 1835 -4705 1987 170 0 0 chr12 115192401 115192701 -28593754 - AluJo SINE Alu -12 300 1 4007 141 58 47 chr12 115192701 115192865 -28593590 + L1MDa LINE L1 1835 1996 -4544 2281 112 13 0 chr12 115192865 115193168 -28593287 + AluSg SINE Alu 1 307 -3 4007 141 58 47 chr12 115193168 115193468 -28592987 + L1MDa LINE L1 1996 2316 -4224 200 130 22 0 chr12 115193468 115193514 -28592941 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2983 217 65 27 chr12 115193535 115193783 -28592672 - L1MDa LINE L1 -5284 1256 1019 1467 140 45 64 chr12 115193783 115193951 -28592504 - AluJo SINE Alu -13 299 136 2371 91 0 0 chr12 115193951 115194247 -28592208 - AluSx SINE Alu -16 296 1 1467 140 45 64 chr12 115194247 115194343 -28592112 - AluJo SINE Alu -176 136 40 2983 217 65 27 chr12 115194343 115194828 -28591627 - L1MDa LINE L1 -5521 1019 495 358 290 24 0 chr12 115194939 115195063 -28591392 + MIR SINE MIR 38 164 -98 381 223 32 0 chr12 115195184 115195278 -28591177 - MIR SINE MIR -89 173 77 2111 95 44 27 chr12 115195442 115195736 -28590719 + AluSc SINE Alu 1 299 -10 845 95 103 16 chr12 115195738 115195864 -28590591 + AluJo SINE Alu 1 137 -175 561 130 61 9 chr12 115195865 115195980 -28590475 + L1MC3 LINE L1 7665 7785 0 1093 109 0 0 chr12 115195992 115196139 -28590316 + AluSp/q SINE Alu 167 313 0 546 99 0 0 chr12 115196160 115196231 -28590224 + AluJ/FLAM SINE Alu 2 72 -240 1171 258 45 21 chr12 115196231 115196675 -28589780 + MLT1H LTR MaLR 60 549 0 226 196 71 0 chr12 115196693 115196749 -28589706 + L1ME LINE L1 5601 5660 -461 1950 155 17 141 chr12 115196773 115196977 -28589478 + MER82 DNA MER2_type 2 230 -423 1851 161 7 3 chr12 115196977 115197263 -28589192 - AluJb SINE Alu -25 287 1 1950 155 17 141 chr12 115197263 115197305 -28589150 + MER82 DNA MER2_type 230 276 -377 2323 101 3 0 chr12 115197305 115197601 -28588854 + AluSp SINE Alu 1 297 -16 1950 155 17 141 chr12 115197601 115197854 -28588601 + MER82 DNA MER2_type 276 438 -215 288 149 0 0 chr12 115197854 115197901 -28588554 + MLT1A1 LTR MaLR 3 49 -316 1829 199 0 0 chr12 115197904 115198215 -28588240 + AluJb SINE Alu 1 311 -1 2227 164 72 14 chr12 115198229 115198643 -28587812 - MLT2B1 LTR ERVL -81 439 2 2281 112 3 0 chr12 115198644 115198939 -28587516 + AluSx SINE Alu 1 296 -16 1941 128 29 45 chr12 115199044 115199356 -28587099 - AluSg SINE Alu -3 307 1 1021 158 26 90 chr12 115199714 115199948 -28586507 + MER20 DNA MER1_type 1 219 0 491 196 9 0 chr12 115199982 115200089 -28586366 - MIR SINE MIR -43 219 112 2388 112 0 0 chr12 115200106 115200411 -28586044 + AluSx SINE Alu 1 305 -7 1808 159 0 30 chr12 115200484 115200785 -28585670 - AluJo SINE Alu -20 292 1 201 283 33 54 chr12 115201311 115201403 -28585052 - L2 LINE L2 -1 3271 3182 568 240 8 8 chr12 115201543 115201668 -28584787 + MIR SINE MIR 22 146 -116 2043 125 6 41 chr12 115201720 115201894 -28584561 - AluSx SINE Alu -4 308 148 2480 94 0 0 chr12 115201894 115202203 -28584252 - AluSq SINE Alu -1 312 4 2043 125 6 41 chr12 115202203 115202347 -28584108 - AluSx SINE Alu -164 148 1 273 183 48 115 chr12 115202564 115202668 -28583787 + MLT1A1 LTR MaLR 196 292 -257 450 169 32 106 chr12 115202694 115202883 -28583572 + MLT1H LTR MaLR 375 549 0 276 217 116 0 chr12 115202889 115202958 -28583497 - MIR SINE MIR -111 151 75 2125 124 3 16 chr12 115203537 115203852 -28582603 + AluSx SINE Alu 1 311 -1 811 265 60 56 chr12 115203862 115204050 -28582405 + MIR SINE MIR 12 203 -59 2554 67 3 0 chr12 115204050 115204347 -28582108 + AluSp SINE Alu 2 299 -14 811 265 60 56 chr12 115204347 115204407 -28582048 + MIR SINE MIR 203 261 -1 363 252 15 10 chr12 115204397 115204518 -28581937 - MIR SINE MIR -66 142 38 * 1411 161 3 122 chr12 115204524 115204859 -28581596 - AluJo SINE Alu -17 295 1 2370 96 0 0 chr12 115205062 115205353 -28581102 + AluSc SINE Alu 1 291 -18 394 258 65 39 chr12 115205447 115205602 -28580853 - MIR SINE MIR -44 218 60 448 222 25 118 chr12 115205655 115205786 -28580669 - MIR SINE MIR 0 262 120 1769 192 0 29 chr12 115205786 115206093 -28580362 + AluJo SINE Alu 1 298 -14 448 222 25 118 chr12 115206093 115206107 -28580348 - MIR SINE MIR -142 120 106 510 17 0 0 chr12 115206107 115206166 -28580289 + (CA)n Simple_repeat Simple_repeat 2 60 0 1874 160 9 31 chr12 115206175 115206494 -28579961 + AluJb SINE Alu 1 312 0 448 222 25 118 chr12 115206494 115206540 -28579915 - MIR SINE MIR -164 98 79 1172 98 6 37 chr12 115206560 115206724 -28579731 - AluSg/x SINE Alu -9 301 143 2147 138 0 19 chr12 115207064 115207243 -28579212 - AluSx SINE Alu 0 312 140 2514 73 0 7 chr12 115207243 115207544 -28578911 - AluSg SINE Alu -11 299 1 2147 138 0 19 chr12 115207544 115207682 -28578773 - AluSx SINE Alu -172 140 1 192 40 0 0 chr12 115207705 115207730 -28578725 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 782 121 9 0 chr12 115207732 115207848 -28578607 - FLAM_C SINE Alu -16 117 1 740 210 12 6 chr12 115208193 115208355 -28578100 + FRAM SINE Alu 1 163 -3 1980 164 0 6 chr12 115208411 115208723 -28577732 + AluJb SINE Alu 1 310 -2 1937 225 60 44 chr12 115208782 115209186 -28577269 - MLT1F LTR MaLR -1 541 145 2519 81 3 0 chr12 115209186 115209495 -28576960 - AluSp SINE Alu -3 310 1 1937 225 60 44 chr12 115209495 115209565 -28576890 - MLT1F LTR MaLR -397 145 56 1202 223 107 26 chr12 115209565 115209911 -28576544 - MLT1A2 LTR MaLR 0 374 1 1937 225 60 44 chr12 115209911 115209956 -28576499 - MLT1F LTR MaLR -486 56 13 463 276 96 6 chr12 115209963 115210119 -28576336 + L1ME LINE L1 5632 5801 -320 2336 120 3 0 chr12 115210347 115210655 -28575800 + AluSx SINE Alu 1 309 -3 2069 95 4 11 chr12 115210889 115211162 -28575293 + AluSg SINE Alu 1 271 -39 422 113 0 14 chr12 115211163 115211234 -28575221 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 2233 138 0 0 chr12 115211511 115211822 -28574633 - AluSx SINE Alu -1 311 1 559 299 27 10 chr12 115212020 115212238 -28574217 + MIR SINE MIR 1 224 -38 1604 200 0 3 chr12 115212238 115212548 -28573907 + AluY SINE Alu 2 310 -1 559 299 27 10 chr12 115212548 115212563 -28573892 + MIR SINE MIR 224 237 -25 406 267 0 9 chr12 115212672 115212777 -28573678 + MIR SINE MIR 83 186 -76 2060 115 32 0 chr12 115212838 115213117 -28573338 - AluJb SINE Alu -14 298 11 2507 63 0 0 chr12 115213810 115214117 -28572338 + AluSc SINE Alu 1 307 0 259 303 0 0 chr12 115214188 115214254 -28572201 - L2 LINE L2 0 3272 3207 722 194 62 0 chr12 115214348 115214508 -28571947 + MER3 DNA MER1_type 3 125 -84 231 149 21 0 chr12 115214517 115214564 -28571891 + (TTTAA)n Simple_repeat Simple_repeat 4 51 0 2302 86 3 20 chr12 115214799 115215103 -28571352 - AluSx SINE Alu -13 299 1 2290 90 7 23 chr12 115215109 115215419 -28571036 - AluSc SINE Alu -4 305 1 184 278 148 95 chr12 115215761 115215863 -28570592 + MIR SINE MIR 12 128 -134 2190 104 0 3 chr12 115215863 115216173 -28570282 - AluSx SINE Alu 0 312 1 184 278 148 95 chr12 115216173 115216239 -28570216 + MIR SINE MIR 128 189 -73 225 339 0 70 chr12 115216390 115216505 -28569950 - MIR3 SINE MIR -52 156 50 374 204 144 23 chr12 115217293 115217425 -28569030 + MIR SINE MIR 67 214 -48 1943 111 13 50 chr12 115217454 115217772 -28568683 - AluSx SINE Alu 0 312 1 375 131 0 0 chr12 115217929 115217990 -28568465 + MIR SINE MIR 81 141 -67 313 265 265 22 chr12 115218026 115218211 -28568244 - MIR SINE MIR -3 259 30 271 224 103 19 chr12 115218641 115218748 -28567707 - L2 LINE L2 0 3272 3157 508 291 11 28 chr12 115218780 115218959 -28567496 - MIR SINE MIR -56 206 31 190 200 0 0 chr12 115218986 115219021 -28567434 - L2 LINE L2 -18 3295 3261 540 226 0 9 chr12 115219049 115219164 -28567291 - MIR SINE MIR -114 148 35 377 180 180 0 chr12 115219227 115219327 -28567128 - L2 LINE L2 -2 3311 3194 1830 158 3 20 chr12 115219535 115219832 -28566623 + AluJo SINE Alu 2 293 -19 2360 108 0 0 chr12 115219833 115220130 -28566325 + AluSg SINE Alu 1 297 -13 266 328 75 8 chr12 115220514 115220648 -28565807 + MIR SINE MIR 47 189 -73 204 40 0 0 chr12 115220666 115220691 -28565764 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1720 159 4 8 chr12 115220691 115220955 -28565500 - AluJb SINE Alu -32 280 18 215 246 53 0 chr12 115220960 115221017 -28565438 - MIR SINE MIR -20 242 183 672 258 0 0 chr12 115221377 115221806 -28564649 + (TG)n Simple_repeat Simple_repeat 1 429 0 745 172 6 61 chr12 115222427 115222607 -28563848 - LTR9 LTR ERV1 -86 526 357 363 41 20 0 chr12 115222607 115222656 -28563799 - HUERS-P3 LTR ERV1 -8392 527 478 582 103 23 0 chr12 115222658 115222745 -28563710 - AluSg/x SINE Alu -40 269 181 2594 149 28 7 chr12 115222749 115223178 -28563277 - HUERS-P3 LTR ERV1 -8478 441 4 1070 119 17 11 chr12 115223181 115223358 -28563097 - LTR9 LTR ERV1 0 612 435 423 296 0 42 chr12 115223375 115223517 -28562938 - MIR SINE MIR -105 157 22 595 231 147 6 chr12 115223532 115223688 -28562767 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chr12 115223956 115223984 -28562471 + AT_rich Low_complexity Low_complexity 1 28 0 2306 122 0 0 chr12 115223985 115224288 -28562167 - AluSg SINE Alu -7 303 1 2560 68 0 3 chr12 115224303 115224610 -28561845 - AluY SINE Alu -5 306 1 1791 130 4 4 chr12 115224643 115224897 -28561558 + AluSx SINE Alu 43 296 -16 2413 104 0 0 chr12 115224897 115225195 -28561260 + AluSx SINE Alu 1 299 -13 1812 175 6 16 chr12 115225786 115226100 -28560355 - AluJo SINE Alu -1 311 1 403 243 200 13 chr12 115226409 115226587 -28559868 + MIR SINE MIR 10 217 -45 303 264 94 0 chr12 115226612 115226718 -28559737 - MIR SINE MIR 0 262 147 234 0 0 0 chr12 115226757 115226783 -28559672 + (CCA)n Simple_repeat Simple_repeat 3 28 0 1823 162 10 3 chr12 115226821 115227117 -28559338 - AluJb SINE Alu -10 302 5 214 256 110 12 chr12 115227523 115227605 -28558850 + MIR SINE MIR 61 150 -112 2471 94 0 0 chr12 115227684 115227991 -28558464 - AluSx SINE Alu -5 307 1 248 271 57 0 chr12 115228546 115228616 -28557839 - MER5A DNA MER1_type -3 186 113 2380 103 3 0 chr12 115228773 115229075 -28557380 + AluSp SINE Alu 1 303 -10 1275 193 84 0 chr12 115229153 115229270 -28557185 + AluJo SINE Alu 1 107 -205 189 0 0 0 chr12 115229270 115229291 -28557164 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1275 193 84 0 chr12 115229291 115229411 -28557044 + AluJo SINE Alu 107 258 -54 370 245 21 11 chr12 115229675 115229769 -28556686 + MLT1J2 LTR MaLR 68 162 -288 1872 124 0 65 chr12 115229858 115230181 -28556274 + AluJo SINE Alu 11 312 0 23 0 0 0 chr12 115230841 115230864 -28555591 + AT_rich Low_complexity Low_complexity 1 23 0 2401 66 0 30 chr12 115233134 115233438 -28553017 - AluSq SINE Alu -18 295 1 446 200 53 0 chr12 115234492 115234587 -28551868 - MER58C DNA MER1_type 0 215 116 623 170 0 0 chr12 115234612 115234712 -28551743 + AluJb SINE Alu 195 294 -18 304 263 0 0 chr12 115237678 115237754 -28548701 - L2 LINE L2 -221 3051 2976 799 128 0 0 chr12 115237893 115238010 -28548445 - FLAM_C SINE Alu -16 117 1 2175 125 3 0 chr12 115238170 115238466 -28547989 - AluSq SINE Alu -16 297 1 1062 106 0 0 chr12 115238468 115238600 -28547855 - AluSq/x SINE Alu -181 132 1 2218 125 0 0 chr12 115239129 115239424 -28547031 - AluSg SINE Alu -15 295 1 1589 155 68 8 chr12 115239507 115239772 -28546683 + AluJb SINE Alu 1 281 -31 353 249 152 36 chr12 115239794 115239959 -28546496 + L1MC5 LINE L1 7682 7865 -96 376 131 49 0 chr12 115240181 115240242 -28546213 + AluY SINE Alu 127 190 -111 1800 152 24 20 chr12 115241415 115241712 -28544743 - AluJo SINE Alu -14 298 1 1940 117 5 97 chr12 115242622 115243015 -28543440 + MER4A LTR ERV1 1 357 -307 512 148 204 35 chr12 115243081 115243223 -28543232 + MER4C LTR ERV1 300 465 0 195 256 0 0 chr12 115243229 115243272 -28543183 - MIR SINE MIR -69 193 151 1975 107 30 19 chr12 115243279 115243549 -28542906 - AluSx SINE Alu -17 295 23 1563 167 84 14 chr12 115243604 115243879 -28542576 + AluJb SINE Alu 1 294 -18 2109 131 0 26 chr12 115243919 115244232 -28542223 - AluSx SINE Alu -7 305 1 2765 167 56 27 chr12 115244233 115244755 -28541700 - L1MB3 LINE L1 -41 6142 5600 2333 112 3 0 chr12 115244755 115245058 -28541397 - AluSp SINE Alu -9 304 1 2765 167 56 27 chr12 115245058 115245123 -28541332 - L1MB3 LINE L1 -583 5600 5538 1166 198 0 14 chr12 115245135 115245352 -28541103 - AluSg/x SINE Alu -4 308 95 1941 197 117 115 chr12 115245354 115246238 -28540217 + LTR28 LTR ERV1 9 816 -13 572 135 11 0 chr12 115246254 115246343 -28540112 - AluJ/FLAM SINE Alu -221 91 2 868 220 6 0 chr12 115246362 115246521 -28539934 - FRAM SINE Alu -19 157 1 192 358 12 0 chr12 115246532 115246613 -28539842 - MIR SINE MIR -121 141 60 340 260 123 41 chr12 115249018 115249164 -28537291 + L1ME4a LINE L1 5964 6121 0 23 0 0 0 chr12 115249749 115249772 -28536683 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr12 115250570 115250603 -28535852 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 991 273 92 45 chr12 115250750 115251326 -28535129 + L1ME4a LINE L1 5517 6119 -2 34 24 0 0 chr12 115252074 115252115 -28534340 + AT_rich Low_complexity Low_complexity 1 41 0 821 142 8 0 chr12 115252115 115252235 -28534220 - FLAM_A SINE Alu -11 122 2 190 298 282 16 chr12 115252237 115252361 -28534094 - MIR SINE MIR -62 200 44 830 159 0 0 chr12 115253593 115253725 -28532730 + FLAM_C SINE Alu 1 132 -1 332 267 56 0 chr12 115254064 115254154 -28532301 - MIR SINE MIR -140 122 28 492 329 198 13 chr12 115254681 115255055 -28531400 - L3 LINE CR1 -66 1511 1069 204 40 0 0 chr12 115255435 115255460 -28530995 + (T)n Simple_repeat Simple_repeat 1 25 0 2146 118 0 7 chr12 115255958 115256254 -28530201 - AluSx SINE Alu -18 294 1 2036 153 0 6 chr12 115256838 115257152 -28529303 - AluSx SINE Alu 0 312 1 2207 112 0 26 chr12 115257185 115257497 -28528958 + AluJb SINE Alu 1 304 -8 426 174 0 23 chr12 115257509 115257595 -28528860 + L1MB4 LINE L1 6085 6168 -12 53 57 0 0 chr12 115258168 115258256 -28528199 + AT_rich Low_complexity Low_complexity 1 88 0 2379 90 3 0 chr12 115258258 115258558 -28527897 + AluSx SINE Alu 1 301 -11 1549 182 11 22 chr12 115260872 115261141 -28525314 - AluJo SINE Alu -3 309 44 1626 168 47 27 chr12 115261453 115261750 -28524705 + AluJb SINE Alu 4 306 -6 449 76 0 54 chr12 115261750 115261842 -28524613 + (GGGAA)n Simple_repeat Simple_repeat 2 88 0 2314 110 0 0 chr12 115261960 115262259 -28524196 + AluSx SINE Alu 1 299 -13 291 286 38 19 chr12 115262973 115263078 -28523377 + L2 LINE L2 3147 3253 -19 279 234 58 47 chr12 115263186 115263333 -28523122 + MIR SINE MIR 41 192 -62 187 351 218 6 chr12 115263376 115263541 -28522914 + L3 LINE CR1 1280 1479 -98 341 323 37 94 chr12 115264019 115264369 -28522086 + L2 LINE L2 2943 3272 0 244 290 60 0 chr12 115264667 115264767 -28521688 + L2 LINE L2 2950 3055 -217 2174 135 0 3 chr12 115265310 115265621 -28520834 + AluSx SINE Alu 1 310 -2 1785 171 13 10 chr12 115265936 115266235 -28520220 + AluJo SINE Alu 1 300 -12 2112 127 0 3 chr12 115266781 115267073 -28519382 - AluSx SINE Alu -21 291 1 1457 169 120 4 chr12 115267566 115267832 -28518623 + AluJo SINE Alu 2 298 -4 226 77 0 173 chr12 115268006 115268058 -28518397 + L1MB1 LINE L1 6113 6155 -13 944 117 0 29 chr12 115268060 115268197 -28518258 - FLAM_C SINE Alu 0 133 1 1483 186 55 39 chr12 115269116 115269235 -28517220 + AluJo SINE Alu 1 117 -195 243 0 0 0 chr12 115269235 115269262 -28517193 + (CA)n Simple_repeat Simple_repeat 2 28 0 1483 186 55 39 chr12 115269262 115269449 -28517006 + AluJo SINE Alu 117 312 0 314 266 193 35 chr12 115269501 115269728 -28516727 - MIR SINE MIR -1 261 3 458 165 0 35 chr12 115270068 115270153 -28516302 - AluJb SINE Alu -8 304 223 1374 166 5 9 chr12 115270230 115270453 -28516002 - AluJb SINE Alu -90 222 1 969 185 0 0 chr12 115270462 115270624 -28515831 - FRAM SINE Alu -9 167 6 286 274 32 0 chr12 115270634 115270729 -28515726 + MARNA DNA Mariner 149 246 -340 2015 153 13 0 chr12 115271682 115271982 -28514473 - AluSx SINE Alu -8 304 1 2170 107 3 35 chr12 115272185 115272502 -28513953 + AluSx SINE Alu 5 311 -1 575 104 0 0 chr12 115272692 115272769 -28513686 + AluJb SINE Alu 38 114 -198 303 211 167 44 chr12 115272920 115273034 -28513421 + L1ME4a LINE L1 5982 6109 -12 2123 122 4 0 chr12 115277066 115277344 -28509111 + AluSx SINE Alu 3 281 -31 487 270 5 81 chr12 115277697 115277838 -28508617 - MER5B DNA MER1_type -3 175 50 1660 181 21 17 chr12 115277838 115278125 -28508330 + AluJb SINE Alu 1 288 -24 487 270 5 81 chr12 115278125 115278168 -28508287 - MER5B DNA MER1_type -128 50 5 1887 143 13 38 chr12 115278188 115278502 -28507953 + AluSx SINE Alu 1 306 -6 790 137 0 0 chr12 115278846 115278963 -28507492 - FLAM_C SINE Alu -16 117 1 195 231 154 77 chr12 115279013 115279104 -28507351 - MIR SINE MIR -64 198 101 364 266 67 110 chr12 115279406 115279688 -28506767 - L2 LINE L2 -5 3267 2998 1343 161 0 0 chr12 115280117 115280316 -28506139 + AluJb SINE Alu 85 283 -29 212 0 36 0 chr12 115280332 115280360 -28506095 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 191 369 0 0 chr12 115280367 115280432 -28506023 - MIR SINE MIR -138 124 60 629 239 0 38 chr12 115281720 115281879 -28504576 + MER3 DNA MER1_type 53 205 -4 344 221 47 12 chr12 115282393 115282479 -28503976 - MIR3 SINE MIR -37 171 83 403 193 151 35 chr12 115282479 115282667 -28503788 - MER2 DNA MER2_type 0 345 7 181 296 74 19 chr12 115282677 115282731 -28503724 - MIR SINE MIR -131 77 21 201 267 0 0 chr12 115283220 115283265 -28503190 - MIR SINE MIR -40 222 178 948 152 97 0 chr12 115283308 115283473 -28502982 + AluSg/x SINE Alu 130 310 0 305 342 9 0 chr12 115283479 115283590 -28502865 - MIR SINE MIR -138 124 13 37 52 0 0 chr12 115283821 115283879 -28502576 + AT_rich Low_complexity Low_complexity 1 58 0 185 92 74 80 chr12 115283896 115284059 -28502396 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 278 94 39 94 chr12 115284061 115284189 -28502266 + (TATAA)n Simple_repeat Simple_repeat 3 123 0 1602 218 153 15 chr12 115284211 115284674 -28501781 + L1MC4 LINE L1 6522 7048 -994 1705 271 82 19 chr12 115284697 115285015 -28501440 + L1MC4 LINE L1 7245 7542 -500 2142 137 0 3 chr12 115285015 115285322 -28501133 + AluSx SINE Alu 1 306 -6 1705 271 82 19 chr12 115285322 115285623 -28500832 + L1MC4 LINE L1 7542 7903 -139 822 138 26 7 chr12 115285683 115285835 -28500620 - L1MA4A LINE L1 -5 6298 6144 1975 144 3 20 chr12 115285845 115286150 -28500305 - AluJb SINE Alu -12 300 1 199 297 99 30 chr12 115287139 115287240 -28499215 + L2 LINE L2 3205 3312 -1 2251 121 7 3 chr12 115288316 115288622 -28497833 + AluSx SINE Alu 1 307 -5 379 328 32 8 chr12 115289125 115289250 -28497205 - MIR3 SINE MIR -45 163 36 2310 74 3 20 chr12 115289592 115289890 -28496565 + AluSx SINE Alu 1 293 -19 207 162 0 0 chr12 115289891 115289928 -28496527 + (TA)n Simple_repeat Simple_repeat 2 38 0 1905 153 50 10 chr12 115289928 115290228 -28496227 + AluJb SINE Alu 1 312 0 194 225 45 162 chr12 115290659 115290770 -28495685 - MIR SINE MIR -89 119 22 433 314 81 38 chr12 115290822 115291007 -28495448 + MIR SINE MIR 16 208 -54 800 219 51 15 chr12 115291050 115291246 -28495209 + L2 LINE L2 3107 3309 -4 700 126 7 98 chr12 115291525 115291591 -28494864 + MER45A DNA AcHobo 49 97 -1484 2358 110 0 0 chr12 115291591 115291901 -28494554 - AluSx SINE Alu -2 310 1 700 126 7 98 chr12 115291901 115291977 -28494478 + MER45A DNA AcHobo 97 178 0 302 250 215 23 chr12 115292136 115292308 -28494147 - MIR SINE MIR -12 250 46 247 54 108 0 chr12 115292819 115292856 -28493599 + MLT1E1 LTR MaLR 299 339 -315 1372 108 54 0 chr12 115292893 115293078 -28493377 + AluSx SINE Alu 1 195 -117 265 150 0 0 chr12 115293089 115293129 -28493326 + FRAM/FAM SINE Alu 16 55 -111 988 101 119 12 chr12 115293129 115293297 -28493158 + AluSg/x SINE Alu 125 310 0 875 186 59 93 chr12 115293298 115293472 -28492983 + MLT1E1 LTR MaLR 426 591 -63 2174 117 3 10 chr12 115293472 115293772 -28492683 + AluSq SINE Alu 1 298 -15 875 186 59 93 chr12 115293772 115293834 -28492621 + MLT1E1 LTR MaLR 591 654 0 290 303 130 0 chr12 115294004 115294212 -28492243 - L2 LINE L2 -2781 533 299 1994 146 7 7 chr12 115294970 115295265 -28491190 - AluJo SINE Alu -17 295 1 216 320 48 41 chr12 115295293 115295440 -28491015 - MIR SINE MIR -87 175 28 2131 88 25 3 chr12 115295541 115295824 -28490631 - AluSx SINE Alu -23 289 1 1953 141 13 29 chr12 115297332 115297638 -28488817 + AluJo SINE Alu 1 301 -11 433 236 1 96 chr12 115297873 115298352 -28488103 + G-rich Low_complexity Low_complexity 1 433 0 351 222 5 90 chr12 115298409 115298598 -28487857 + G-rich Low_complexity Low_complexity 3 175 0 446 257 5 80 chr12 115298630 115298921 -28487534 + G-rich Low_complexity Low_complexity 1 269 0 752 175 8 8 chr12 115299994 115300120 -28486335 + FLAM_C SINE Alu 2 127 -16 2260 92 24 10 chr12 115300302 115300596 -28485859 - AluSc SINE Alu -11 298 1 2224 112 3 0 chr12 115301708 115302004 -28484451 + AluSx SINE Alu 1 297 -15 650 210 183 5 chr12 115302181 115302367 -28484088 + MER20B DNA MER1_type 1 219 0 2260 129 56 24 chr12 115303156 115303567 -28482888 + L1MB7 LINE L1 5729 6152 -32 39 95 0 0 chr12 115305374 115305490 -28480965 + GC_rich Low_complexity Low_complexity 1 116 0 26 0 0 0 chr12 115305620 115305646 -28480809 + GC_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 115305666 115305690 -28480765 + (CCGGG)n Simple_repeat Simple_repeat 4 27 0 223 191 0 32 chr12 115305693 115305756 -28480699 + C-rich Low_complexity Low_complexity 6 66 0 24 0 0 0 chr12 115305882 115305906 -28480549 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 115305922 115305944 -28480511 + GC_rich Low_complexity Low_complexity 1 22 0 2637 52 0 3 chr12 115306052 115306359 -28480096 + AluSc SINE Alu 1 306 -3 314 303 92 13 chr12 115306476 115306628 -28479827 - L2 LINE L2 -198 3074 2911 241 262 68 10 chr12 115306690 115306793 -28479662 - L2 LINE L2 -610 2704 2596 847 226 103 31 chr12 115307102 115307363 -28479092 + MER20B DNA MER1_type 3 282 -501 498 61 0 0 chr12 115307367 115307433 -28479022 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1011 215 182 4 chr12 115307438 115307685 -28478770 - AluJb SINE Alu -11 291 1 1299 119 0 6 chr12 115307719 115307896 -28478559 + AluSg/x SINE Alu 97 272 -38 1368 62 0 0 chr12 115307917 115308096 -28478359 + (GGGGA)n Simple_repeat Simple_repeat 2 180 0 303 244 15 84 chr12 115308105 115308236 -28478219 + MER20B DNA MER1_type 349 470 -313 360 233 0 0 chr12 115308385 115308475 -28477980 + MER20B DNA MER1_type 541 630 -153 779 201 62 6 chr12 115308475 115308654 -28477801 - MER5A DNA MER1_type 0 189 1 859 137 19 153 chr12 115309060 115309182 -28477273 + MER96B DNA MER1_type? 42 179 -238 2072 116 51 0 chr12 115309182 115309475 -28476980 - AluSx SINE Alu -4 308 1 859 137 19 153 chr12 115309475 115309491 -28476964 + MER96B DNA MER1_type? 179 196 -221 1584 175 18 11 chr12 115309491 115309777 -28476678 - AluJo SINE Alu -24 288 1 859 137 19 153 chr12 115309777 115309899 -28476556 + MER96B DNA MER1_type? 196 268 -149 982 120 140 0 chr12 115309947 115310097 -28476358 + AluSg/x SINE Alu 134 304 -6 268 228 25 13 chr12 115310471 115310550 -28475905 + L2 LINE L2 3019 3098 -174 359 331 32 0 chr12 115310637 115310761 -28475694 - MIR SINE MIR -111 151 24 264 66 40 132 chr12 115310806 115310882 -28475573 + MADE1 DNA Mariner 1 69 -11 2408 94 0 0 chr12 115310917 115311214 -28475241 - AluSx SINE Alu -15 297 1 1929 199 50 79 chr12 115311297 115311654 -28474801 + MLT1D LTR MaLR 3 369 -136 767 155 77 42 chr12 115311654 115311822 -28474633 - FAM SINE Alu 0 175 2 1462 52 0 10 chr12 115311827 115312019 -28474436 - L1PA7 LINE L1 -1 6153 5964 1929 199 50 79 chr12 115312019 115312050 -28474405 + MLT1D LTR MaLR 373 403 -102 628 150 0 86 chr12 115312050 115312080 -28474375 - FLAM_A SINE Alu -171 131 100 1553 163 107 4 chr12 115312080 115312350 -28474105 + AluJb SINE Alu 1 298 -14 628 150 0 86 chr12 115312350 115312459 -28473996 - FLAM_A SINE Alu -202 100 4 1929 199 50 79 chr12 115312459 115312581 -28473874 + MLT1D LTR MaLR 403 505 0 251 317 117 25 chr12 115312685 115312805 -28473650 - L2 LINE L2 -4 3268 3138 2208 106 7 7 chr12 115312877 115313178 -28473277 + AluSx SINE Alu 1 301 -11 336 191 147 29 chr12 115313237 115313373 -28473082 - L2 LINE L2 -147 3166 3015 1527 148 93 22 chr12 115313468 115313738 -28472717 - AluSx SINE Alu -23 289 1 2367 112 3 0 chr12 115313787 115314099 -28472356 + AluSq SINE Alu 1 313 0 1426 179 147 51 chr12 115314206 115314359 -28472096 + MLT1C LTR MaLR 6 143 -324 2280 99 3 0 chr12 115314359 115314677 -28471778 + AluSp SINE Alu 2 320 0 1426 179 147 51 chr12 115314677 115314936 -28471519 + MLT1C LTR MaLR 143 459 -8 2050 146 7 0 chr12 115315426 115315720 -28470735 + AluSx SINE Alu 5 300 -12 2665 192 9 55 chr12 115315790 115316154 -28470301 + MLT1F LTR MaLR 1 332 -210 1944 144 0 7 chr12 115316154 115316464 -28469991 - AluSx SINE Alu 0 308 1 2665 192 9 55 chr12 115316464 115316660 -28469795 + MLT1F LTR MaLR 332 536 -6 362 263 69 74 chr12 115316796 115316971 -28469484 + L1ME LINE L1 4455 4628 -1518 351 247 21 0 chr12 115317274 115317367 -28469088 - MIR SINE MIR -156 106 12 2220 148 0 0 chr12 115317495 115317806 -28468649 + AluSx SINE Alu 1 311 -1 2284 119 3 0 chr12 115317824 115318134 -28468321 + AluSq SINE Alu 3 313 0 2066 142 0 3 chr12 115318405 115318707 -28467748 + AluSx SINE Alu 2 302 -10 2508 75 0 0 chr12 115318817 115319112 -28467343 + AluSp SINE Alu 1 295 -18 726 167 64 32 chr12 115319204 115319318 -28467137 - FRAM SINE Alu -141 171 49 2995 119 93 87 chr12 115319318 115319900 -28466555 + LTR8 LTR ERV1 1 589 -102 2221 104 6 19 chr12 115319900 115320217 -28466238 + AluSq SINE Alu 1 313 0 2995 119 93 87 chr12 115320217 115320321 -28466134 + LTR8 LTR ERV1 589 691 0 726 167 64 32 chr12 115320321 115320362 -28466093 - FRAM SINE Alu -263 49 11 397 217 120 91 chr12 115320395 115320458 -28465997 + L1ME LINE L1 5209 5269 -877 2586 73 0 0 chr12 115320458 115320759 -28465696 + AluSg SINE Alu 1 301 -9 397 217 120 91 chr12 115320759 115320870 -28465585 + L1ME LINE L1 5269 5388 -758 436 214 152 0 chr12 115320887 115320999 -28465456 + MER96 DNA MER1_type? 1 129 -46 414 300 40 0 chr12 115320999 115321149 -28465306 + L1ME LINE L1 5544 5699 -422 2057 138 3 23 chr12 115321220 115321524 -28464931 + AluJo SINE Alu 1 298 -14 1019 135 14 0 chr12 115321569 115321717 -28464738 + FRAM SINE Alu 21 170 -6 337 295 93 38 chr12 115321795 115321978 -28464477 + HAL1b LINE L1 1154 1346 -2 1946 147 31 0 chr12 115322359 115322652 -28463803 - AluJb SINE Alu -10 302 1 1883 127 33 0 chr12 115323016 115323291 -28463164 + AluSg SINE Alu 11 294 -16 441 0 0 0 chr12 115323298 115323347 -28463108 + (CA)n Simple_repeat Simple_repeat 2 50 0 301 186 48 21 chr12 115323471 115323616 -28462839 + CT-rich Low_complexity Low_complexity 1 149 0 1475 200 24 86 chr12 115323643 115324063 -28462392 - L1ME3 LINE L1 -42 6120 5727 4917 160 14 47 chr12 115324067 115324259 -28462196 + MER49 LTR ERV1 1 198 -725 1808 168 46 0 chr12 115324259 115324378 -28462077 + AluJb SINE Alu 1 113 -199 243 0 0 0 chr12 115324378 115324405 -28462050 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1808 168 46 0 chr12 115324405 115324570 -28461885 + AluJb SINE Alu 113 298 -14 4917 160 14 47 chr12 115324570 115324999 -28461456 + MER49 LTR ERV1 198 640 -283 255 61 0 0 chr12 115324999 115325032 -28461423 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2012 135 0 4 chr12 115325032 115325313 -28461142 - AluJb SINE Alu -32 280 1 4917 160 14 47 chr12 115325313 115325634 -28460821 + MER49 LTR ERV1 638 914 -9 419 270 21 0 chr12 115325655 115325797 -28460658 - L1ME3 LINE L1 -456 5714 5567 242 287 78 62 chr12 115325799 115325878 -28460577 + MIR SINE MIR 129 212 -50 2293 115 0 10 chr12 115325878 115326192 -28460263 + AluSx SINE Alu 1 311 -1 242 287 78 62 chr12 115326192 115326241 -28460214 + MIR SINE MIR 212 259 -3 1389 164 102 27 chr12 115326461 115326704 -28459751 + AluJo SINE Alu 7 231 -81 180 0 0 0 chr12 115326704 115326724 -28459731 + (TC)n Simple_repeat Simple_repeat 2 21 0 2266 116 3 10 chr12 115326724 115327034 -28459421 - AluSx SINE Alu -4 308 1 1389 164 102 27 chr12 115327034 115327045 -28459410 + AluJo SINE Alu 230 281 -31 2150 130 0 9 chr12 115327058 115327373 -28459082 - AluSx SINE Alu 0 312 1 617 271 33 6 chr12 115328439 115328620 -28457835 + MIR SINE MIR 77 262 0 430 347 60 0 chr12 115328994 115329193 -28457262 + MIR SINE MIR 46 256 -6 324 0 0 0 chr12 115329228 115329264 -28457191 + (CA)n Simple_repeat Simple_repeat 1 36 0 324 0 0 0 chr12 115329540 115329576 -28456879 + (CA)n Simple_repeat Simple_repeat 2 37 0 2149 125 10 7 chr12 115329667 115329971 -28456484 - AluSq SINE Alu -8 305 1 279 54 0 0 chr12 115330022 115330059 -28456396 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 2223 129 0 0 chr12 115330296 115330590 -28455865 + AluSq SINE Alu 1 294 -19 392 211 0 88 chr12 115330591 115330619 -28455836 - MIR SINE MIR -123 139 110 483 169 17 59 chr12 115330619 115330737 -28455718 - MER81 DNA DNA 0 114 2 392 211 0 88 chr12 115330737 115330822 -28455633 - MIR SINE MIR -152 110 36 938 179 0 0 chr12 115330934 115331096 -28455359 + FRAM SINE Alu 3 164 -2 241 305 37 0 chr12 115331114 115331196 -28455259 - MIR SINE MIR -66 142 58 2159 137 0 3 chr12 115331205 115331511 -28454944 - AluSg SINE Alu -5 305 1 394 261 87 29 chr12 115331594 115331732 -28454723 - MIR SINE MIR -16 246 101 274 286 77 11 chr12 115332232 115332323 -28454132 + L2 LINE L2 3168 3264 -8 774 261 0 41 chr12 115332338 115332556 -28453899 + MIR SINE MIR 54 262 0 280 215 15 15 chr12 115332640 115332705 -28453750 - MIR SINE MIR -150 112 48 502 289 75 12 chr12 115332825 115332998 -28453457 + MIR SINE MIR 71 254 -8 2072 132 27 3 chr12 115333393 115333689 -28452766 + AluSx SINE Alu 2 304 -8 2212 122 10 0 chr12 115333821 115334117 -28452338 - AluSq SINE Alu -14 299 1 257 176 0 20 chr12 115334117 115334168 -28452287 - AluJo SINE Alu -167 135 86 1263 204 0 5 chr12 115334168 115334389 -28452066 - AluJo SINE Alu -92 220 1 1664 177 4 4 chr12 115334565 115334831 -28451624 - AluJo SINE Alu -46 266 1 554 287 179 15 chr12 115334880 115335148 -28451307 - MLT1J2 LTR MaLR -137 313 2 859 260 10 10 chr12 115336017 115336225 -28450230 - MIR SINE MIR -21 241 34 303 298 50 16 chr12 115336348 115336406 -28450049 - MIR SINE MIR -39 223 168 2257 113 7 0 chr12 115336406 115336699 -28449756 - AluSx SINE Alu -17 295 1 303 298 50 16 chr12 115336699 115336761 -28449694 - MIR SINE MIR -94 168 99 1015 285 8 0 chr12 115336924 115337173 -28449282 + MIR SINE MIR 11 261 -1 2144 133 0 13 chr12 115337175 115337475 -28448980 - AluSx SINE Alu -16 296 1 454 215 49 1 chr12 115337849 115337974 -28448481 - MIR SINE MIR -64 144 15 378 274 25 32 chr12 115338067 115338224 -28448231 - L3 LINE CR1 -166 1411 1256 221 250 47 16 chr12 115338506 115338570 -28447885 + MER5B DNA MER1_type 1 66 -112 251 311 82 15 chr12 115338603 115338809 -28447646 - L1 LINE L1 -1880 4266 4047 2311 97 0 10 chr12 115338888 115339186 -28447269 - AluY SINE Alu -16 295 1 2129 146 0 3 chr12 115339232 115339541 -28446914 + AluJb SINE Alu 1 308 -4 398 234 12 117 chr12 115339563 115339656 -28446799 + MER5A DNA MER1_type 37 105 -84 1838 166 0 20 chr12 115339656 115339951 -28446504 - AluJo SINE Alu -9 303 15 398 234 12 117 chr12 115339951 115340028 -28446427 + MER5A DNA MER1_type 105 189 0 2511 65 0 13 chr12 115340218 115340526 -28445929 - AluY SINE Alu -2 309 6 328 287 180 0 chr12 115340730 115340852 -28445603 + MIR3 SINE MIR 33 176 -32 203 245 0 0 chr12 115341575 115341624 -28444831 + L2 LINE L2 3207 3255 -17 294 312 65 43 chr12 115342011 115342197 -28444258 - MIR SINE MIR -38 224 35 200 98 0 24 chr12 115342747 115342788 -28443667 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1845 158 38 10 chr12 115342790 115343081 -28443374 - AluJb SINE Alu -13 299 1 734 279 5 25 chr12 115343084 115343285 -28443170 - MIR SINE MIR -62 200 4 610 206 6 6 chr12 115343317 115343497 -28442958 + (TG)n Simple_repeat Simple_repeat 1 180 0 524 255 2 7 chr12 115343510 115343920 -28442535 + (TG)n Simple_repeat Simple_repeat 1 407 0 2879 123 108 46 chr12 115343936 115344207 -28442248 - LTR59 LTR ERV1 0 597 344 2412 76 10 3 chr12 115344207 115344508 -28441947 + AluSg SINE Alu 1 303 -7 2879 123 108 46 chr12 115344508 115344798 -28441657 - LTR59 LTR ERV1 -253 344 1 2348 103 3 3 chr12 115345280 115345582 -28440873 - AluSq SINE Alu -11 302 1 2109 130 3 0 chr12 115345741 115346026 -28440429 + AluJb SINE Alu 11 296 -16 231 368 29 0 chr12 115346056 115346227 -28440228 + (ATGGTG)n Simple_repeat Simple_repeat 5 180 0 378 328 6 22 chr12 115346469 115346652 -28439803 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 441 243 11 69 chr12 115347091 115347352 -28439103 + (ATGGTG)n Simple_repeat Simple_repeat 1 245 0 316 241 25 13 chr12 115347673 115347752 -28438703 - MIR SINE MIR -58 150 71 527 325 21 10 chr12 115348037 115348231 -28438224 - MIR SINE MIR -13 249 54 512 252 0 0 chr12 115348943 115349050 -28437405 - MER103 DNA DNA -59 107 1 559 299 27 10 chr12 115349425 115349440 -28437015 - MIR SINE MIR -25 237 224 2256 117 0 0 chr12 115349440 115349749 -28436706 - AluY SINE Alu -1 310 2 559 299 27 10 chr12 115349749 115349967 -28436488 - MIR SINE MIR -38 224 1 2233 138 0 0 chr12 115350165 115350476 -28435979 + AluSx SINE Alu 1 311 -1 422 113 0 14 chr12 115350753 115350824 -28435631 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 2069 95 4 11 chr12 115350825 115351098 -28435357 - AluSg SINE Alu -39 271 1 2193 99 16 7 chr12 115351332 115351636 -28434819 - AluSx SINE Alu -5 307 1 363 133 0 0 chr12 115351793 115351853 -28434602 + MIR SINE MIR 81 140 -68 449 175 22 49 chr12 115553369 115553552 -28232903 + A-rich Low_complexity Low_complexity 3 180 0 198 41 41 61 chr12 115553593 115553642 -28232813 + (TAAAAA)n Simple_repeat Simple_repeat 5 52 0 204 119 42 42 chr12 115553777 115553895 -28232560 + (CAAA)n Simple_repeat Simple_repeat 2 119 0 287 184 53 9 chr12 115553898 115554012 -28232443 + (CACAA)n Simple_repeat Simple_repeat 1 119 0 209 153 94 35 chr12 115554196 115554281 -28232174 + (CAGGG)n Simple_repeat Simple_repeat 5 94 0 21 57 0 0 chr12 115554913 115554948 -28231507 + AT_rich Low_complexity Low_complexity 1 35 0 310 294 42 7 chr12 115556114 115556257 -28230198 + L1ME LINE L1 5672 5819 -302 2080 110 3 10 chr12 115557097 115557397 -28229058 - AluSx SINE Alu -14 298 1 1610 76 5 9 chr12 115557693 115557917 -28228538 - L1PA8 LINE L1 0 6172 5950 296 308 59 11 chr12 115557930 115558203 -28228252 - L1M4 LINE L1 -1555 5293 5008 32 43 0 0 chr12 115559600 115559646 -28226809 + AT_rich Low_complexity Low_complexity 1 46 0 326 320 128 79 chr12 115561440 115562025 -28224430 - L1M4 LINE L1 -5605 1244 631 21 0 0 0 chr12 115568622 115568643 -28217812 + AT_rich Low_complexity Low_complexity 1 21 0 434 369 54 22 chr12 115569011 115569363 -28217092 + L2 LINE L2 2660 3016 -256 21 0 0 0 chr12 115569417 115569438 -28217017 + AT_rich Low_complexity Low_complexity 1 21 0 918 81 0 0 chr12 115569557 115569681 -28216774 - L1PA11 LINE L1 0 6174 6051 2644 169 34 20 chr12 115569698 115570250 -28216205 - L1MB8 LINE L1 -1 6177 5618 259 324 28 9 chr12 115570445 115570553 -28215902 - MIR SINE MIR -59 149 40 302 329 149 25 chr12 115570830 115570991 -28215464 + HAL1 LINE L1 472 652 -1855 1513 295 136 42 chr12 115571101 115572607 -28213848 + HAL1 LINE L1 807 2452 -55 180 250 62 21 chr12 115572671 115572719 -28213736 + MIR SINE MIR 43 92 -170 239 157 11 79 chr12 115572745 115572834 -28213621 + (TA)n Simple_repeat Simple_repeat 1 83 0 2076 116 7 0 chr12 115573143 115573436 -28213019 - AluSp SINE Alu -16 297 3 2034 145 0 3 chr12 115573987 115574291 -28212164 - AluSx SINE Alu -9 303 1 1790 162 0 13 chr12 115574901 115575204 -28211251 + AluJo SINE Alu 3 301 -11 34 42 0 0 chr12 115575706 115575754 -28210701 + AT_rich Low_complexity Low_complexity 1 48 0 320 318 136 11 chr12 115575851 115576027 -28210428 + L1ME LINE L1 5542 5739 -382 1907 104 4 4 chr12 115576825 115577094 -28209361 - AluSx SINE Alu -43 269 1 270 348 63 48 chr12 115578177 115578384 -28208071 + L2 LINE L2 3028 3237 -35 905 265 108 14 chr12 115578703 115579118 -28207337 - L1ME LINE L1 -400 5770 5317 230 227 13 107 chr12 115579157 115579307 -28207148 - L1ME LINE L1 -905 5241 5106 1346 286 72 23 chr12 115579463 115579633 -28206822 - L1ME LINE L1 -1333 4813 4653 398 52 0 17 chr12 115579633 115579691 -28206764 + (CA)n Simple_repeat Simple_repeat 1 57 0 1346 286 72 23 chr12 115579691 115580261 -28206194 - L1ME LINE L1 -1493 4653 4037 199 206 59 157 chr12 115580395 115580497 -28205958 + L2 LINE L2 3221 3312 -1 351 65 0 0 chr12 115580735 115580781 -28205674 + (TA)n Simple_repeat Simple_repeat 2 47 0 1763 194 47 6 chr12 115580791 115581131 -28205324 - MLT1A1 LTR MaLR 0 365 12 180 0 0 0 chr12 115581710 115581730 -28204725 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 611 194 65 69 chr12 115581971 115582187 -28204268 + L1MC5 LINE L1 6747 6961 -1000 21 89 0 0 chr12 115582658 115582714 -28203741 + AT_rich Low_complexity Low_complexity 1 56 0 639 305 63 5 chr12 115583689 115583912 -28202543 - MIR SINE MIR -19 243 8 441 54 0 0 chr12 115584815 115584871 -28201584 + (TG)n Simple_repeat Simple_repeat 2 57 0 375 316 53 81 chr12 115585495 115585780 -28200675 - L2 LINE L2 -9 3263 2987 201 191 59 0 chr12 115585895 115585963 -28200492 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 23 33 0 0 chr12 115586399 115586429 -28200026 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr12 115589588 115589635 -28196820 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr12 115590505 115590540 -28195915 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr12 115590916 115590936 -28195519 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1822 31 5 5 chr12 115590936 115591160 -28195295 - L1PA3 LINE L1 -10 6145 5922 203 344 58 48 chr12 115592278 115592572 -28193883 - L2 LINE L2 -1044 2270 1974 419 204 0 43 chr12 115592686 115592779 -28193676 - AluJ/FLAM SINE Alu -223 89 1 230 93 0 23 chr12 115593397 115593440 -28193015 + (TA)n Simple_repeat Simple_repeat 2 43 0 2990 207 135 14 chr12 115593913 115594757 -28191698 + L1MC3 LINE L1 6840 7785 0 236 356 48 19 chr12 115596015 115596119 -28190336 - L2 LINE L2 -22 3250 3144 233 376 20 27 chr12 115596245 115596394 -28190061 - L2 LINE L2 -183 3089 2942 207 0 0 0 chr12 115597329 115597352 -28189103 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1787 138 72 33 chr12 115598738 115599099 -28187356 - THE1C LTR MaLR 0 375 1 195 363 25 12 chr12 115599256 115599336 -28187119 + MIR SINE MIR 20 100 -108 2111 151 20 59 chr12 115599496 115599846 -28186609 - MLT1B LTR MaLR 0 390 57 2011 131 53 11 chr12 115599846 115600205 -28186250 - THE1C LTR MaLR -1 374 1 2111 151 20 59 chr12 115600205 115600258 -28186197 - MLT1B LTR MaLR -333 57 3 192 250 78 0 chr12 115600576 115600640 -28185815 - MIR3 SINE MIR -35 173 105 189 107 0 0 chr12 115601851 115601879 -28184576 + (TG)n Simple_repeat Simple_repeat 2 29 0 13493 71 5 2 chr12 115602512 115605078 -28181377 - L1PA6 LINE L1 -2 6152 3559 199 299 144 10 chr12 115605697 115605794 -28180661 - MIR SINE MIR -3 259 150 405 214 0 0 chr12 115605794 115605864 -28180591 - Tigger5 DNA MER2_type 0 2323 2254 2189 82 7 30 chr12 115605866 115606169 -28180286 + AluY SINE Alu 1 296 -15 1112 156 0 0 chr12 115606559 115606719 -28179736 + AluSg/x SINE Alu 133 292 -18 2002 143 0 4 chr12 115608089 115608390 -28178065 + AluSx SINE Alu 3 302 0 225 65 0 0 chr12 115608394 115608425 -28178030 + (TAA)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr12 115608691 115608722 -28177733 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 429 20 0 0 chr12 115608721 115608771 -28177684 + (GA)n Simple_repeat Simple_repeat 1 50 0 330 169 0 0 chr12 115608807 115608872 -28177583 + (TG)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr12 115609028 115609065 -28177390 + AT_rich Low_complexity Low_complexity 1 37 0 199 363 39 49 chr12 115609709 115609913 -28176542 - L3 LINE CR1 -311 1266 1065 213 329 51 70 chr12 115609980 115610138 -28176317 - L2 LINE L2 0 3272 3118 7624 27 0 0 chr12 115611298 115612275 -28174180 - L1PA3 LINE L1 -3 6152 5175 42840 33 21 1 chr12 115612286 115618316 -28168139 - L1PA2 LINE L1 0 6155 1 6932 34 5 1 chr12 115618315 115619152 -28167303 - L1PA3 LINE L1 -952 5194 4355 * 26 0 0 0 chr12 115619219 115619245 -28167210 + AT_rich Low_complexity Low_complexity 1 26 0 216 97 0 0 chr12 115619900 115619931 -28166524 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 244 301 126 5 chr12 115621216 115621314 -28165141 - MIR SINE MIR -77 131 24 1600 181 65 6 chr12 115621846 115622171 -28164284 + L1MC1 LINE L1 5988 6331 -2 229 353 72 13 chr12 115623313 115623466 -28162989 - MIR SINE MIR -28 234 73 790 316 36 45 chr12 115623472 115624006 -28162449 - L2 LINE L2 -727 2587 2059 1271 101 11 17 chr12 115624880 115625059 -28161396 + AluSq SINE Alu 134 311 -2 24 0 0 0 chr12 115626458 115626482 -28159973 + AT_rich Low_complexity Low_complexity 1 24 0 730 316 20 0 chr12 115627601 115627854 -28158601 - MIR SINE MIR 0 262 5 1911 93 12 4 chr12 115630588 115630845 -28155610 + AluSq SINE Alu 44 302 -11 5560 136 26 77 chr12 115631183 115631874 -28154581 + L1MC1 LINE L1 5148 5751 -582 1361 178 123 19 chr12 115631874 115632143 -28154312 + AluJo SINE Alu 1 297 -5 5560 136 26 77 chr12 115632143 115632681 -28153774 + L1MC1 LINE L1 5751 6315 -18 192 77 0 0 chr12 115633988 115634014 -28152441 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 238 306 99 36 chr12 115634259 115634370 -28152085 - L2 LINE L2 -198 3074 2957 231 243 95 0 chr12 115634408 115634482 -28151973 + MER20B DNA MER1_type 83 163 -620 838 231 158 9 chr12 115634499 115634841 -28151614 + MER20B DNA MER1_type 302 694 -89 1218 263 9 22 chr12 115634894 115635210 -28151245 - MLT1A1 LTR MaLR -44 321 10 5586 46 0 0 chr12 115635268 115635945 -28150510 - L1PA5 LINE L1 -2 6152 5476 402 148 0 0 chr12 115636240 115636301 -28150154 - MLT1D LTR MaLR 0 505 445 42746 51 8 2 chr12 115636305 115642441 -28144014 + L1PA4 LINE L1 1 6155 0 1254 219 50 75 chr12 115642455 115642894 -28143561 - MLT1D LTR MaLR -71 434 7 23 0 0 0 chr12 115644080 115644103 -28142352 + AT_rich Low_complexity Low_complexity 1 23 0 714 282 31 18 chr12 115644162 115644389 -28142066 + MIR SINE MIR 32 261 -1 4201 148 26 11 chr12 115646144 115646873 -28139582 - Tigger1 DNA MER2_type -1 2417 1678 232 304 141 11 chr12 115647494 115647586 -28138869 + L2 LINE L2 3163 3266 -6 1372 197 49 28 chr12 115648135 115648419 -28138036 - AluJo SINE Alu -22 290 1 31 0 0 0 chr12 115651668 115651699 -28134756 + AT_rich Low_complexity Low_complexity 1 31 0 228 35 0 0 chr12 115652676 115652705 -28133750 + (CA)n Simple_repeat Simple_repeat 2 30 0 882 312 55 6 chr12 115653451 115653781 -28132674 - MLT1I LTR MaLR -51 358 13 23 54 0 0 chr12 115654022 115654059 -28132396 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr12 115654147 115654172 -28132283 + AT_rich Low_complexity Low_complexity 1 25 0 240 363 0 0 chr12 115654195 115654275 -28132180 - L2 LINE L2 -207 3065 2986 682 289 22 55 chr12 115654504 115654739 -28131716 - MIR SINE MIR -24 238 14 1512 276 53 23 chr12 115655518 115655982 -28130473 - L1M4 LINE L1 -3388 2758 2271 1860 139 26 16 chr12 115655982 115656291 -28130164 - AluSq SINE Alu -1 312 1 1512 276 53 23 chr12 115656291 115656424 -28130031 - L1M4 LINE L1 -3875 2271 2143 243 224 67 75 chr12 115657917 115658051 -28128404 + L1MC4 LINE L1 6571 6703 -1339 23 0 0 0 chr12 115658121 115658144 -28128311 + AT_rich Low_complexity Low_complexity 1 23 0 262 332 243 20 chr12 115658218 115658622 -28127833 + L2 LINE L2 2814 3307 -6 293 319 135 18 chr12 115658827 115658990 -28127465 + MIR SINE MIR 49 230 -32 1323 148 0 0 chr12 115659648 115659872 -28126583 - AluSg/x SINE Alu 0 314 91 284 145 0 20 chr12 115659872 115659929 -28126526 - Alu SINE Alu -256 44 1 832 328 55 37 chr12 115660092 115660549 -28125906 + L2 LINE L2 38 502 -2812 1142 323 93 11 chr12 115660562 115661335 -28125120 + L2 LINE L2 2463 3309 -4 210 311 19 68 chr12 115661590 115661693 -28124762 - MIR SINE MIR -132 130 33 225 79 0 79 chr12 115661696 115661734 -28124721 - L2 LINE L2 -2 3270 3236 1833 50 67 8 chr12 115662770 115663010 -28123445 - AluY SINE Alu -19 292 39 291 309 75 0 chr12 115663556 115663650 -28122805 + MIR SINE MIR 36 136 -72 391 298 112 0 chr12 115663886 115664047 -28122408 + MIR3 SINE MIR 10 188 -20 373 218 0 13 chr12 115664051 115664129 -28122326 + L2 LINE L2 3237 3313 0 23 54 0 0 chr12 115664396 115664433 -28122022 + AT_rich Low_complexity Low_complexity 1 37 0 2690 180 182 144 chr12 115664497 115665066 -28121389 - L1MD3 LINE L1 -2 7993 7447 621 225 16 0 chr12 115665066 115665195 -28121260 - MLT1F1 LTR MaLR -436 131 1 2690 180 182 144 chr12 115665195 115665758 -28120697 - L1MD3 LINE L1 -548 7447 6686 313 356 110 32 chr12 115665965 115666274 -28120181 + L2 LINE L2 2205 2537 -777 310 190 4 21 chr12 115666277 115666350 -28120105 - L1MD3 LINE L1 -385 7598 7333 222 294 35 35 chr12 115666487 115666572 -28119883 + L2 LINE L2 2719 2803 -511 230 320 81 29 chr12 115666899 115667071 -28119384 + L2 LINE L2 3133 3313 0 22 0 0 0 chr12 115667127 115667149 -28119306 + AT_rich Low_complexity Low_complexity 1 22 0 221 327 64 39 chr12 115667208 115667364 -28119091 - MIR SINE MIR 0 262 103 553 278 128 32 chr12 115667431 115667744 -28118711 + MLT1J2 LTR MaLR 108 450 0 181 290 8 105 chr12 115667744 115667868 -28118587 - MIR SINE MIR -141 121 10 234 0 0 0 chr12 115669895 115669921 -28116534 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2007 156 0 0 chr12 115671201 115671509 -28114946 + AluSx SINE Alu 1 308 -4 1124 167 10 5 chr12 115671525 115671723 -28114732 + AluJb SINE Alu 105 303 -9 23 0 0 0 chr12 115672284 115672307 -28114148 + AT_rich Low_complexity Low_complexity 1 23 0 3288 13 0 0 chr12 115672323 115672696 -28113759 - L1PA2 LINE L1 -374 5781 5409 3260 19 0 0 chr12 115672696 115673071 -28113384 + L1PA2 LINE L1 5776 6153 -2 231 297 91 11 chr12 115674530 115674705 -28111750 - L1M4 LINE L1 -3024 3122 2934 189 107 0 0 chr12 115674835 115674863 -28111592 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 200 222 0 0 chr12 115675167 115675212 -28111243 + T-rich Low_complexity Low_complexity 1 45 0 312 254 105 92 chr12 115675854 115676291 -28110164 - L1ME4a LINE L1 -89 6032 5590 387 289 35 75 chr12 115677177 115677350 -28109105 + MIR SINE MIR 8 173 -89 6953 36 3 99 chr12 115727351 115728425 -28058030 - L1P LINE L1 -2640 3506 2536 11889 30 0 1 chr12 115728542 115729968 -28056487 - L1P LINE L1 -1219 4927 3503 8220 50 4 1 chr12 115730140 115731193 -28055262 + L1P LINE L1 1290 2345 -3801 1449 208 13 20 chr12 115731193 115731491 -28054964 - AluJb SINE Alu -16 296 1 191 346 5 90 chr12 115731491 115731679 -28054776 - L3 LINE CR1 -915 662 491 421 333 118 58 chr12 115731916 115732559 -28053896 + L2 LINE L2 2280 2961 -353 2013 109 10 20 chr12 115732566 115732868 -28053587 - AluSg SINE Alu -11 299 1 341 372 61 22 chr12 115732987 115733167 -28053288 + L2 LINE L2 2825 3011 -302 202 188 0 62 chr12 115735205 115735253 -28051202 + L2 LINE L2 3213 3257 -15 225 0 0 0 chr12 115737211 115737236 -28049219 + (T)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr12 115737784 115737819 -28048636 + AT_rich Low_complexity Low_complexity 1 35 0 412 292 42 92 chr12 115739222 115739482 -28046973 - MER102a DNA MER1_type -4 326 80 301 245 32 0 chr12 115739485 115739579 -28046876 + (TA)n Simple_repeat Simple_repeat 1 97 0 24 0 0 0 chr12 115740112 115740136 -28046319 + AT_rich Low_complexity Low_complexity 1 24 0 441 171 0 0 chr12 115740648 115740736 -28045719 + CT-rich Low_complexity Low_complexity 3 90 0 205 226 19 0 chr12 115741205 115741258 -28045197 + (TA)n Simple_repeat Simple_repeat 2 55 0 1743 106 73 7 chr12 115741701 115741976 -28044479 + AluSx SINE Alu 16 308 -4 279 0 0 0 chr12 115742064 115742095 -28044360 + (TA)n Simple_repeat Simple_repeat 2 32 0 267 31 0 0 chr12 115742165 115742197 -28044258 + (CA)n Simple_repeat Simple_repeat 1 32 0 548 79 0 0 chr12 115743744 115743820 -28042635 - L1MA1 LINE L1 -9 6293 6218 216 0 0 0 chr12 115744933 115744957 -28041498 + (T)n Simple_repeat Simple_repeat 1 24 0 357 351 80 69 chr12 115746847 115747427 -28039028 - L2 LINE L2 -40 3232 2656 458 188 36 4 chr12 115749545 115749680 -28036775 - MER53 DNA DNA 0 189 1 377 257 4 136 chr12 115751237 115751494 -28034961 - L2 LINE L2 -94 3219 2997 404 345 28 0 chr12 115753450 115753592 -28032863 + MIR SINE MIR 21 166 -96 2069 105 7 14 chr12 115755127 115755421 -28031034 - AluY SINE Alu -19 292 1 1737 252 14 0 chr12 115755487 115755931 -28030524 + L1PA16 LINE L1 4687 5136 -1010 5189 132 21 26 chr12 115756036 115757097 -28029358 + L1PA16 LINE L1 5108 6164 -2 444 281 99 6 chr12 115757752 115757923 -28028532 - MIR SINE MIR -71 191 5 26 0 0 0 chr12 115760841 115760867 -28025588 + AT_rich Low_complexity Low_complexity 1 26 0 901 131 182 0 chr12 115760896 115761072 -28025383 - MER46B DNA MER2_type -153 83 1 235 205 108 36 chr12 115761012 115761095 -28025360 + MER46A DNA MER2_type 79 167 -69 * 515 148 23 0 chr12 115761336 115761424 -28025031 - MLT1A2 LTR MaLR 0 374 285 736 224 10 42 chr12 115761435 115761627 -28024828 - MLT1A2 LTR MaLR -15 359 174 653 191 0 7 chr12 115764761 115764902 -28021553 + CT-rich Low_complexity Low_complexity 4 143 0 297 344 84 71 chr12 115764979 115765519 -28020936 - L2 LINE L2 -88 3184 2639 389 240 58 25 chr12 115766295 115766416 -28020039 + HAL1 LINE L1 1526 1650 -857 239 305 42 8 chr12 115766460 115766578 -28019877 + HAL1 LINE L1 1781 1902 -605 186 281 47 31 chr12 115766636 115766700 -28019755 + L2 LINE L2 3207 3271 -1 2025 127 0 3 chr12 115768356 115768647 -28017808 - AluSg SINE Alu -20 290 1 182 239 0 22 chr12 115768953 115768999 -28017456 - L2 LINE L2 0 3272 3228 225 232 0 87 chr12 115770135 115770204 -28016251 - L1MC4 LINE L1 -179 7863 7801 21 71 0 0 chr12 115772101 115772143 -28014312 + AT_rich Low_complexity Low_complexity 1 42 0 262 301 14 0 chr12 115772637 115772710 -28013745 + CT-rich Low_complexity Low_complexity 4 77 0 215 246 131 72 chr12 115772743 115772922 -28013533 + L2 LINE L2 2979 3251 -62 1063 206 140 58 chr12 115772922 115773286 -28013169 - MSTD LTR MaLR 0 396 3 215 246 131 72 chr12 115773286 115773314 -28013141 + L2 LINE L2 3251 3276 -37 251 28 28 0 chr12 115774127 115774163 -28012292 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 681 171 0 8 chr12 115774165 115774282 -28012173 - FLAM_C SINE Alu -17 116 1 546 322 62 22 chr12 115774515 115774742 -28011713 - MIR SINE MIR -12 250 15 32 43 0 0 chr12 115775110 115775156 -28011299 + AT_rich Low_complexity Low_complexity 1 46 0 27 0 0 0 chr12 115775380 115775407 -28011048 + AT_rich Low_complexity Low_complexity 1 27 0 1485 225 60 39 chr12 115775429 115775815 -28010640 + MSTD LTR MaLR 1 394 -2 198 0 0 0 chr12 115777620 115777642 -28008813 + (T)n Simple_repeat Simple_repeat 1 22 0 444 261 70 9 chr12 115777854 115777969 -28008486 - L2 LINE L2 0 3313 3192 22 0 0 0 chr12 115778842 115778864 -28007591 + AT_rich Low_complexity Low_complexity 1 22 0 225 83 0 0 chr12 115778887 115778923 -28007532 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 564 109 22 0 chr12 115780780 115780872 -28005583 + L1PA15 LINE L1 5964 6057 -108 660 161 0 23 chr12 115780929 115781059 -28005396 + L1PA15 LINE L1 6038 6164 -1 202 304 0 0 chr12 115782950 115783006 -28003449 - MIR SINE MIR -115 93 38 2179 72 20 7 chr12 115783248 115783541 -28002914 + AluY SINE Alu 1 297 -14 600 330 15 5 chr12 115784052 115784249 -28002206 + MIR SINE MIR 4 202 -60 1821 146 32 0 chr12 115784266 115784547 -28001908 - AluSx SINE Alu -22 290 1 10118 134 21 22 chr12 115785003 115785525 -28000930 - Tigger1 DNA MER2_type -735 1683 1162 2144 53 21 0 chr12 115785525 115785808 -28000647 - L1PA4 LINE L1 0 6155 5867 10118 134 21 22 chr12 115785808 115786971 -27999484 - Tigger1 DNA MER2_type -1256 1162 1 25 31 0 0 chr12 115787150 115787182 -27999273 + AT_rich Low_complexity Low_complexity 1 32 0 485 270 104 52 chr12 115788106 115788395 -27998060 + L2 LINE L2 3010 3313 0 2044 131 7 3 chr12 115789181 115789478 -27996977 - AluSq SINE Alu -12 301 4 318 294 64 43 chr12 115789529 115789880 -27996575 - MLT1L LTR MaLR -97 518 134 257 250 0 0 chr12 115790881 115790937 -27995518 + GA-rich Low_complexity Low_complexity 1 56 0 339 96 0 0 chr12 115791252 115791304 -27995151 + (ATG)n Simple_repeat Simple_repeat 1 52 0 26 0 0 0 chr12 115791546 115791572 -27994883 + AT_rich Low_complexity Low_complexity 1 26 0 1105 239 113 19 chr12 115791753 115792071 -27994384 - MER39 LTR ERV1 -2 705 358 563 212 180 58 chr12 115792125 115792314 -27994141 - MER39 LTR ERV1 -490 217 6 23 0 0 0 chr12 115792852 115792875 -27993580 + AT_rich Low_complexity Low_complexity 1 23 0 372 43 0 0 chr12 115793063 115793109 -27993346 + (TG)n Simple_repeat Simple_repeat 2 47 0 423 0 0 0 chr12 115793415 115793462 -27992993 + (TG)n Simple_repeat Simple_repeat 2 48 0 275 258 112 0 chr12 115793684 115793773 -27992682 + L2 LINE L2 3206 3304 -9 1415 166 79 4 chr12 115795214 115795479 -27990976 - AluJo SINE Alu -26 286 2 1818 55 102 0 chr12 115796520 115796756 -27989699 + AluY SINE Alu 36 295 -16 2236 102 3 6 chr12 115797539 115797853 -27988602 - AluSq SINE Alu 0 313 1 775 197 0 0 chr12 115798554 115798696 -27987759 - FLAM_C SINE Alu -1 142 1 1014 266 130 60 chr12 115798872 115799402 -27987053 - MER21B LTR ERV1 -156 707 141 246 235 84 48 chr12 115799734 115799900 -27986555 - MER114 LTR ERV 0 648 477 316 261 23 13 chr12 115800010 115800208 -27986247 - MER114 LTR ERV -394 254 20 27 0 0 0 chr12 115800523 115800550 -27985905 + AT_rich Low_complexity Low_complexity 1 27 0 13426 141 26 41 chr12 115800795 115801969 -27984486 - Tigger1 DNA MER2_type -3 2415 1224 1205 234 59 31 chr12 115801969 115802259 -27984196 + AluJo SINE Alu 1 298 -4 13426 141 26 41 chr12 115802259 115803537 -27982918 - Tigger1 DNA MER2_type -1194 1224 1 201 263 0 0 chr12 115803780 115803837 -27982618 + A-rich Low_complexity Low_complexity 1 57 0 3668 179 11 67 chr12 115804739 115806006 -27980449 - L1M4 LINE L1 -924 5222 4114 222 366 0 0 chr12 115806680 115806751 -27979704 - L3 LINE CR1 -9 1568 1498 783 168 7 0 chr12 115807247 115807390 -27979065 - MER2 DNA MER2_type -136 209 66 661 142 15 97 chr12 115807376 115807510 -27978945 - MER2 DNA MER2_type -221 124 2 * 532 212 94 89 chr12 115807569 115807988 -27978467 - LTR48B LTR ERV1 -48 734 157 306 311 11 0 chr12 115807977 115808067 -27978388 - MER34 LTR ERV1 -447 95 5 * 189 416 65 0 chr12 115809458 115809612 -27976843 - L3 LINE CR1 -1379 198 35 4982 30 8 2 chr12 115810374 115810980 -27975475 - L1PA4 LINE L1 -2 6153 5544 12003 34 3 1 chr12 115811082 115813281 -27973174 - L1PA3 LINE L1 -21 6134 3933 514 320 86 60 chr12 115813651 115814197 -27972258 + L3 LINE CR1 344 903 -674 197 308 0 0 chr12 115814682 115814734 -27971721 - L2 LINE L2 -667 2647 2596 195 378 0 10 chr12 115814807 115814905 -27971550 + L3 LINE CR1 1354 1450 -127 187 232 36 0 chr12 115814927 115814983 -27971472 + MIR3 SINE MIR 149 206 -2 264 353 58 58 chr12 115815519 115815968 -27970487 - L2 LINE L2 -926 2388 1937 7218 42 6 8 chr12 115815968 115817271 -27969184 + L1PA5 LINE L1 4851 6151 -3 264 353 58 58 chr12 115817271 115817320 -27969135 - L2 LINE L2 -1376 1938 1890 216 167 0 0 chr12 115818153 115818201 -27968254 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr12 115818388 115818411 -27968044 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 115819658 115819692 -27966763 + AT_rich Low_complexity Low_complexity 1 34 0 1733 179 0 20 chr12 115821091 115821393 -27965062 + AluJb SINE Alu 2 297 -15 286 321 0 0 chr12 115821640 115821749 -27964706 + L1ME LINE L1 5688 5796 -325 369 0 0 0 chr12 115821759 115821800 -27964655 + (TA)n Simple_repeat Simple_repeat 2 42 0 109 36 0 12 chr12 115822056 115822133 -27964322 + AT_rich Low_complexity Low_complexity 1 77 -87 2369 73 0 10 chr12 115822133 115822435 -27964020 - AluY SINE Alu -12 299 1 109 36 0 12 chr12 115822435 115822523 -27963932 + AT_rich Low_complexity Low_complexity 77 164 0 239 280 40 0 chr12 115822618 115822693 -27963762 - MIR SINE MIR -73 189 112 357 338 71 15 chr12 115823262 115823460 -27962995 + MIR SINE MIR 54 262 0 22 0 0 0 chr12 115823480 115823502 -27962953 + AT_rich Low_complexity Low_complexity 1 22 0 230 220 68 0 chr12 115824441 115824500 -27961955 - L2 LINE L2 0 3313 3251 225 127 28 42 chr12 115824740 115824811 -27961644 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 34 42 0 0 chr12 115824811 115824859 -27961596 + AT_rich Low_complexity Low_complexity 1 48 0 313 272 207 18 chr12 115825979 115826148 -27960307 - MIR SINE MIR -22 240 40 2137 65 7 0 chr12 115826176 115826451 -27960004 - AluY SINE Alu 0 311 35 1230 235 190 20 chr12 115826622 115827065 -27959390 + MLT1F LTR MaLR 19 536 -6 370 291 35 50 chr12 115827806 115827947 -27958508 + MIR3 SINE MIR 23 161 -47 24 32 0 0 chr12 115829582 115829613 -27956842 + AT_rich Low_complexity Low_complexity 1 31 0 244 277 99 10 chr12 115829995 115830096 -27956359 + MIR SINE MIR 151 260 -2 306 180 16 49 chr12 115830909 115830970 -27955485 - L2 LINE L2 -6 3307 3249 1255 234 1 16 chr12 115831113 115831440 -27955015 + L1PA15 LINE L1 3475 3787 -3778 7958 170 16 30 chr12 115831469 115831637 -27954818 + L1PA15 LINE L1 5113 5282 -2302 2294 108 13 53 chr12 115831637 115832016 -27954439 + THE1B LTR MaLR 1 364 0 7958 170 16 30 chr12 115832016 115833955 -27952500 + L1PA15 LINE L1 5282 7181 -403 1128 82 0 0 chr12 115833959 115834105 -27952350 - AluY SINE Alu -16 295 150 2254 136 13 18 chr12 115834122 115834511 -27951944 + L1PA15 LINE L1 7190 7576 -8 21 36 0 0 chr12 115834662 115834690 -27951765 + AT_rich Low_complexity Low_complexity 1 28 0 915 307 90 48 chr12 115834782 115835303 -27951152 + L2 LINE L2 469 1011 -2303 815 259 94 31 chr12 115835327 115835582 -27950873 + MLT1G1 LTR MaLR 323 593 -2 261 273 71 20 chr12 115835629 115835728 -27950727 + MIR SINE MIR 73 176 -86 306 332 98 54 chr12 115836654 115836859 -27949596 - MIR SINE MIR -44 218 5 31 58 0 0 chr12 115837803 115837855 -27948600 + AT_rich Low_complexity Low_complexity 1 52 0 2429 114 19 11 chr12 115838112 115838473 -27947982 - THE1B LTR MaLR 0 364 1 1426 75 11 0 chr12 115839327 115839514 -27946941 + AluSq SINE Alu 125 313 0 868 273 81 73 chr12 115839959 115841170 -27945285 + L1ME LINE L1 315 1574 -4687 2137 117 0 0 chr12 115841435 115841725 -27944730 - AluSx SINE Alu -22 290 1 1893 134 3 31 chr12 115842606 115842927 -27943528 - AluSx SINE Alu 0 312 1 228 411 46 29 chr12 115843212 115843387 -27943068 + MER91A DNA MER1_type 17 194 -2 187 317 49 49 chr12 115844816 115844958 -27941497 - L2 LINE L2 -93 3220 3079 1853 142 3 3 chr12 115844987 115845283 -27941172 - AluSx SINE Alu -16 296 1 294 29 0 0 chr12 115845956 115845991 -27940464 + (TG)n Simple_repeat Simple_repeat 2 36 0 447 311 11 33 chr12 115846133 115846313 -27940142 + MIR SINE MIR 39 214 -48 195 42 0 0 chr12 115846604 115846628 -27939827 + (TA)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr12 115849035 115849064 -27937391 + AT_rich Low_complexity Low_complexity 1 29 0 207 387 139 16 chr12 115849189 115849383 -27937072 - L2 LINE L2 -11 3261 3044 555 103 19 9 chr12 115849401 115849508 -27936947 + (GA)n Simple_repeat Simple_repeat 1 108 0 204 375 151 16 chr12 115849745 115849937 -27936518 - L2 LINE L2 -11 3261 3044 323 78 20 0 chr12 115849957 115850008 -27936447 + (GA)n Simple_repeat Simple_repeat 1 52 0 1367 222 22 41 chr12 115850870 115851239 -27935216 - MLT1A1 LTR MaLR 0 365 4 189 352 62 23 chr12 115851264 115851392 -27935063 + MIR3 SINE MIR 14 146 -62 33 43 0 0 chr12 115851528 115851575 -27934880 + AT_rich Low_complexity Low_complexity 1 47 0 13244 32 3 0 chr12 115851823 115854179 -27932276 + L1PA3 LINE L1 3791 6152 -3 227 235 20 0 chr12 115854202 115854253 -27932202 - MER58 DNA MER1_type -103 238 187 200 59 29 0 chr12 115854408 115854442 -27932013 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 385 270 22 66 chr12 115855269 115855295 -27931160 + LTR33 LTR ERVL 86 112 -409 1715 191 94 21 chr12 115855295 115855730 -27930725 + MLT1C LTR MaLR 1 467 0 385 270 22 66 chr12 115855730 115855840 -27930615 + LTR33 LTR ERVL 112 216 -305 21 0 0 0 chr12 115856007 115856028 -27930427 + AT_rich Low_complexity Low_complexity 1 21 0 230 356 11 0 chr12 115856250 115856337 -27930118 + L2 LINE L2 3185 3272 0 207 0 0 0 chr12 115858675 115858698 -27927757 + (T)n Simple_repeat Simple_repeat 1 23 0 268 325 181 19 chr12 115861263 115861423 -27925032 + L3 LINE CR1 1312 1497 -80 266 353 103 16 chr12 115861717 115861901 -27924554 - L2 LINE L2 -526 2788 2589 1859 171 19 6 chr12 115862406 115862722 -27923733 - MER1B DNA MER1_type -3 336 17 21 0 0 0 chr12 115863605 115863626 -27922829 + AT_rich Low_complexity Low_complexity 1 21 0 2054 198 70 16 chr12 115864250 115864805 -27921650 - L1MC3 LINE L1 -2 7783 7199 229 273 57 11 chr12 115864808 115864896 -27921559 - MLT1F1 LTR MaLR -434 133 42 948 140 38 0 chr12 115864897 115865083 -27921372 - L1MC3 LINE L1 -683 7102 6910 391 149 14 27 chr12 115865084 115865158 -27921297 - L1MC4a LINE L1 -1090 6718 6646 582 300 102 14 chr12 115865246 115865529 -27920926 + MLT1J LTR MaLR 7 314 -197 228 327 26 35 chr12 115865724 115865837 -27920618 - L2 LINE L2 -12 3301 3190 242 241 0 0 chr12 115869210 115869264 -27917191 + (TA)n Simple_repeat Simple_repeat 2 55 0 7570 30 1 0 chr12 115869430 115870907 -27915548 + L1PA5 LINE L1 4676 6152 -2 652 139 10 0 chr12 115870927 115871028 -27915427 + AluSq/x SINE Alu 3 104 -209 2116 89 0 57 chr12 115872241 115872583 -27913872 - AluY SINE Alu 0 311 1 1943 152 18 39 chr12 115873379 115873767 -27912688 - L1MA3 LINE L1 0 6305 5926 673 209 8 0 chr12 115873999 115874128 -27912327 + MLT1A2 LTR MaLR 4 133 -241 1766 209 24 33 chr12 115874137 115874587 -27911868 - MER39 LTR ERV1 -2 705 260 305 273 51 10 chr12 115874738 115874880 -27911575 + MLT1A2 LTR MaLR 241 374 0 25 31 0 0 chr12 115874919 115874951 -27911504 + AT_rich Low_complexity Low_complexity 1 32 0 295 295 9 0 chr12 115875064 115875169 -27911286 - L1ME3A LINE L1 -284 5886 5781 2308 81 10 0 chr12 115875206 115875554 -27910901 + AluY SINE Alu 1 351 0 227 283 87 22 chr12 115875559 115875651 -27910804 - L1ME3A LINE L1 -461 5709 5612 201 39 0 0 chr12 115875833 115875859 -27910596 + (TG)n Simple_repeat Simple_repeat 2 27 0 314 358 89 11 chr12 115876387 115876566 -27909889 - MIR3 SINE MIR 0 208 16 367 303 45 19 chr12 115876605 115876760 -27909695 - LTR33 LTR ERVL -5 516 358 362 155 0 0 chr12 115877372 115877430 -27909025 + AluSp/q SINE Alu 225 282 -21 774 245 170 43 chr12 115877485 115878221 -27908234 - L1MC5 LINE L1 -115 7846 7018 316 345 9 0 chr12 115878480 115878596 -27907859 - MIR SINE MIR -2 260 144 281 300 100 0 chr12 115878670 115878750 -27907705 - MIR SINE MIR -134 128 41 1382 91 0 67 chr12 115878839 115879049 -27907406 - AluSx SINE Alu -116 196 1 2098 112 3 19 chr12 115879495 115879808 -27906647 + AluSq SINE Alu 1 308 -5 190 289 0 0 chr12 115879960 115879998 -27906457 - L2 LINE L2 -49 3223 3186 35 24 0 0 chr12 115881027 115881069 -27905386 + AT_rich Low_complexity Low_complexity 1 42 0 22 88 0 0 chr12 115881204 115881261 -27905194 + AT_rich Low_complexity Low_complexity 1 57 0 3084 58 58 6 chr12 115881619 115883910 -27902545 + L1P LINE L1 1 2528 -3618 1022 107 0 0 chr12 115933911 115934051 -27852404 - AluSq SINE Alu -37 276 137 478 262 76 17 chr12 115934099 115934271 -27852184 - MIR SINE MIR -5 257 76 2083 106 0 0 chr12 115934333 115934616 -27851839 + AluSq SINE Alu 1 283 -30 2101 108 7 0 chr12 115934616 115934921 -27851534 + AluSq SINE Alu 1 307 -6 1939 142 0 0 chr12 115935195 115935498 -27850957 + AluJb SINE Alu 1 303 -9 2004 109 19 19 chr12 115936029 115936340 -27850115 + AluSx SINE Alu 1 311 -1 498 214 77 8 chr12 115936507 115936624 -27849831 + FLAM_C SINE Alu 15 139 -4 1913 154 0 10 chr12 115936735 115937047 -27849408 - AluSx SINE Alu -3 309 1 2195 112 0 6 chr12 115937180 115937494 -27848961 - AluSx SINE Alu 0 312 1 276 203 16 0 chr12 115937568 115937632 -27848823 + MER116 DNA Mariner 1 65 -15 2588 92 26 0 chr12 115937831 115938177 -27848278 - THE1A LTR MaLR 0 355 1 11094 97 35 1 chr12 115938177 115939706 -27846749 - THE1A-int LTR MaLR 0 1580 1 2538 88 35 0 chr12 115939706 115940049 -27846406 - THE1A LTR MaLR 0 355 1 753 153 183 0 chr12 115940406 115940537 -27845918 + FRAM SINE Alu 10 164 -12 280 309 0 0 chr12 115940743 115940811 -27845644 + MIR SINE MIR 84 151 -57 894 230 78 31 chr12 115941070 115941327 -27845128 - MLT1C LTR MaLR 0 467 199 1972 128 20 0 chr12 115941330 115941626 -27844829 - AluSx SINE Alu -10 302 1 1003 97 8 0 chr12 115941626 115941760 -27844695 - AluSq/x SINE Alu -177 135 1 687 149 86 69 chr12 115941762 115941936 -27844519 - MLT1C LTR MaLR -285 182 6 182 291 25 38 chr12 115942002 115942081 -27844374 + MIR SINE MIR 23 100 -108 1775 89 115 7 chr12 115942627 115942896 -27843559 - AluSg1 SINE Alu -11 298 1 246 265 88 52 chr12 115943425 115943561 -27842894 - L2 LINE L2 -823 2491 2351 329 301 0 0 chr12 115943978 115944071 -27842384 - MLT1K LTR MaLR -12 576 484 1916 140 7 10 chr12 115944147 115944447 -27842008 - AluSx SINE Alu -11 301 3 322 51 0 0 chr12 115944543 115944582 -27841873 + AluSq SINE Alu 116 154 -149 1860 125 11 7 chr12 115944939 115945226 -27841229 + AluJb SINE Alu 1 288 -24 2138 93 3 0 chr12 115945235 115945526 -27840929 + AluSq SINE Alu 1 292 -21 451 268 141 25 chr12 115945716 115946070 -27840385 - L2 LINE L2 -87 3226 2832 1227 276 120 78 chr12 115946087 115946214 -27840241 - L1MEc LINE L1 -5143 1253 1133 2130 77 0 18 chr12 115946214 115946531 -27839924 - AluY SINE Alu 0 312 1 1227 276 120 78 chr12 115946531 115946634 -27839821 - L1MEc LINE L1 -5263 1133 1036 2175 117 3 0 chr12 115946634 115946943 -27839512 - AluSp SINE Alu -3 310 1 1227 276 120 78 chr12 115946943 115947088 -27839367 - L1MEc LINE L1 -5360 1036 899 2214 109 7 0 chr12 115947088 115947392 -27839063 - AluSp SINE Alu -7 306 1 1227 276 120 78 chr12 115947392 115948182 -27838273 - L1MEc LINE L1 -5497 899 35 761 120 106 14 chr12 115948399 115948541 -27837914 - AluSg/x SINE Alu -21 289 135 2088 96 10 0 chr12 115948759 115949051 -27837404 + AluSp SINE Alu 1 295 -18 220 197 197 0 chr12 115949119 115949190 -27837265 - L2 LINE L2 -1 3271 3187 774 215 60 0 chr12 115949622 115949771 -27836684 + AluJb SINE Alu 137 294 -18 1016 100 52 14 chr12 115950974 115951224 -27835231 - AluSc SINE Alu 0 309 2 200 356 122 9 chr12 115951231 115951346 -27835109 + L3 LINE CR1 1439 1566 -11 1551 179 4 4 chr12 115953044 115953323 -27833132 - AluJb SINE Alu -33 279 1 448 151 85 9 chr12 115953510 115953616 -27832839 - L1MB7 LINE L1 0 6184 6071 340 164 164 14 chr12 115953620 115953693 -27832762 - L1MB7 LINE L1 -193 5985 5902 2245 113 0 3 chr12 115953907 115954207 -27832248 + AluSc SINE Alu 1 299 -10 763 206 84 7 chr12 115954776 115954931 -27831524 - FRAM SINE Alu -12 164 1 2693 39 3 0 chr12 115954972 115955282 -27831173 - AluY SINE Alu 0 311 1 28 48 0 0 chr12 115955638 115955680 -27830775 + AT_rich Low_complexity Low_complexity 1 42 0 1584 168 17 57 chr12 115956153 115956450 -27830005 + AluSx SINE Alu 5 289 -23 1156 182 0 14 chr12 115956533 115956747 -27829708 - MER46A DNA MER2_type 0 236 26 886 110 0 0 chr12 115956841 115956959 -27829496 - AluSp/q SINE Alu -17 296 179 2323 88 3 0 chr12 115957304 115957619 -27828836 - AluSp SINE Alu 0 316 1 865 144 0 0 chr12 115958437 115958562 -27827893 - FLAM_C SINE Alu -18 125 1 823 177 7 0 chr12 115959083 115959224 -27827231 - FLAM_C SINE Alu -1 142 1 2513 75 0 0 chr12 115959239 115959546 -27826909 - AluY SINE Alu -3 308 2 1675 183 7 10 chr12 115959693 115959982 -27826473 + AluJo SINE Alu 1 288 -24 2305 76 14 10 chr12 115965808 115966099 -27820356 + AluY SINE Alu 1 292 -19 181 290 58 43 chr12 115966278 115966347 -27820108 + MIR SINE MIR 117 186 -76 2193 128 0 3 chr12 115966850 115967147 -27819308 + AluSx SINE Alu 1 296 -16 2266 88 10 10 chr12 115967583 115967880 -27818575 + AluSp SINE Alu 1 297 -16 1418 130 0 42 chr12 115967958 115968174 -27818281 + AluJb SINE Alu 85 291 -21 2365 89 3 0 chr12 115968667 115968958 -27817497 - AluSx SINE Alu 0 312 21 1962 128 52 3 chr12 115969381 115969671 -27816784 - AluSx SINE Alu -7 305 2 1876 152 10 7 chr12 115970070 115970366 -27816089 + AluSx SINE Alu 1 297 -15 1974 118 20 10 chr12 115970404 115970708 -27815747 - AluSp SINE Alu -6 307 1 2165 120 13 0 chr12 115970832 115971140 -27815315 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 115971186 115971216 -27815239 + AT_rich Low_complexity Low_complexity 1 30 0 1742 152 104 9 chr12 115971217 115971533 -27814922 - MER7A DNA MER2_type -2 344 1 2076 106 4 4 chr12 115971546 115971844 -27814611 - AluSp SINE Alu 0 309 12 729 214 0 0 chr12 115972098 115972229 -27814226 - FLAM_A SINE Alu -2 131 1 2258 110 10 10 chr12 115972297 115972606 -27813849 - AluSx SINE Alu -3 309 1 839 170 0 15 chr12 115972611 115972746 -27813709 - AluJo SINE Alu -178 134 2 2587 84 0 0 chr12 115972751 115973060 -27813395 - AluY SINE Alu -2 309 1 1032 96 0 7 chr12 115973100 115973236 -27813219 - AluSq/x SINE Alu -177 135 1 538 204 63 198 chr12 115973268 115973520 -27812935 - L1MEd LINE L1 -4953 1166 882 396 0 0 0 chr12 115973520 115973564 -27812891 + (TTA)n Simple_repeat Simple_repeat 2 45 0 538 204 63 198 chr12 115973564 115973650 -27812805 - L1MEd LINE L1 -5237 882 786 2210 92 43 0 chr12 115973650 115973932 -27812523 + AluSx SINE Alu 1 294 -18 538 204 63 198 chr12 115973932 115973969 -27812486 - L1MEd LINE L1 -5333 786 746 2145 127 0 3 chr12 115973969 115974261 -27812194 + AluSg1 SINE Alu 1 291 -18 538 204 63 198 chr12 115974261 115974618 -27811837 - L1MEd LINE L1 -5373 746 554 2192 129 7 13 chr12 115974618 115974928 -27811527 - AluSx SINE Alu -2 310 3 538 204 63 198 chr12 115974928 115975022 -27811433 - L1MEd LINE L1 -5565 554 449 769 228 91 54 chr12 115975426 115975564 -27810891 + MIR SINE MIR 13 165 -97 7165 48 16 0 chr12 115975564 115976980 -27809475 + L1PA6 LINE L1 4725 6154 0 769 228 91 54 chr12 115976980 115977082 -27809373 + MIR SINE MIR 165 262 0 2607 62 7 0 chr12 115977298 115977607 -27808848 - AluY SINE Alu 0 311 1 543 130 70 70 chr12 115977646 115977761 -27808694 - FRAM SINE Alu -22 154 40 28 29 0 0 chr12 115977784 115977819 -27808636 + AT_rich Low_complexity Low_complexity 1 35 0 509 169 0 11 chr12 115977859 115977948 -27808507 + L1MC1 LINE L1 6230 6317 -16 931 104 0 8 chr12 115977948 115978073 -27808382 - AluJb SINE Alu -15 297 174 1990 142 0 37 chr12 115978806 115979130 -27807325 - AluJo SINE Alu 0 312 1 577 285 30 34 chr12 115979187 115979450 -27807005 - L1MC4a LINE L1 -1933 5875 5614 2254 120 0 0 chr12 115979512 115979804 -27806651 + AluSx SINE Alu 1 292 -20 414 235 116 56 chr12 115979820 115980071 -27806384 - L1MC5 LINE L1 -5 7956 7691 1429 166 88 68 chr12 115980088 115980384 -27806071 - AluJb SINE Alu 0 302 1 2250 97 0 10 chr12 115980409 115980544 -27805911 + AluSx SINE Alu 1 136 -169 2436 92 3 0 chr12 115980544 115980847 -27805608 + AluSp SINE Alu 2 305 -8 2250 97 0 10 chr12 115980847 115981019 -27805436 + AluSx SINE Alu 136 305 0 1161 93 7 0 chr12 115981406 115981556 -27804899 + AluSp/q SINE Alu 155 305 -8 2119 108 0 4 chr12 115981682 115981959 -27804496 - AluSx SINE Alu -36 276 1 538 254 54 32 chr12 115982032 115982217 -27804238 - MER5A DNA MER1_type 0 189 1 531 297 115 18 chr12 115982306 115982636 -27803819 - MLT1K LTR MaLR -3 585 224 1080 136 13 0 chr12 115982777 115982931 -27803524 + AluJb SINE Alu 138 293 -19 252 338 14 0 chr12 115982945 115983019 -27803436 + L3 LINE CR1 1393 1467 -110 256 318 24 0 chr12 115983213 115983298 -27803157 + MIR SINE MIR 58 144 -64 693 213 174 55 chr12 115983305 115983741 -27802714 + MLT1J LTR MaLR 21 508 -3 220 338 28 0 chr12 115983748 115983819 -27802636 + MIR SINE MIR 158 230 -32 2293 116 0 0 chr12 115984384 115984687 -27801768 - AluSx SINE Alu -9 303 1 894 136 0 0 chr12 115985233 115985358 -27801097 + FLAM_C SINE Alu 1 125 -18 367 215 119 69 chr12 115985443 115985573 -27800882 + MIR SINE MIR 15 149 -62 2385 93 0 3 chr12 115985583 115985883 -27800572 + AluSg SINE Alu 1 299 -11 641 287 219 25 chr12 115986066 115986697 -27799758 + L2 LINE L2 1955 2707 -607 1591 193 49 66 chr12 115986703 115986969 -27799486 + L1MB5 LINE L1 5751 6009 -165 837 171 0 0 chr12 115986969 115987098 -27799357 - FLAM_A SINE Alu -3 130 2 1591 193 49 66 chr12 115987098 115987256 -27799199 + L1MB5 LINE L1 6009 6168 -6 335 91 0 0 chr12 115987278 115987322 -27799133 + Alu SINE Alu 1 44 -258 426 219 31 39 chr12 115987503 115987631 -27798824 + AluYa5 SINE Alu 149 275 -36 427 263 50 45 chr12 115987754 115987952 -27798503 + L2 LINE L2 2860 3058 -214 1120 141 0 0 chr12 115988033 115988189 -27798266 - AluJb SINE Alu -22 290 135 279 0 0 0 chr12 115988194 115988225 -27798230 + (TG)n Simple_repeat Simple_repeat 2 32 0 30 83 0 0 chr12 115988229 115988301 -27798154 + AT_rich Low_complexity Low_complexity 1 72 0 222 118 0 0 chr12 115988301 115988335 -27798120 + (TG)n Simple_repeat Simple_repeat 2 35 0 837 150 0 0 chr12 115988350 115988470 -27797985 - FLAM_C SINE Alu -23 120 1 347 281 137 33 chr12 115988482 115988635 -27797820 + L2 LINE L2 3102 3270 -2 1815 181 3 0 chr12 115989235 115989523 -27796932 + AluJb SINE Alu 1 289 -23 1417 209 47 82 chr12 115989694 115990025 -27796430 - Charlie4a DNA MER1_type -1458 503 162 2498 84 3 3 chr12 115990025 115990335 -27796120 - AluSq SINE Alu -3 310 1 1417 209 47 82 chr12 115990335 115990415 -27796040 - Charlie4a DNA MER1_type -1799 162 111 1692 156 0 80 chr12 115990415 115990729 -27795726 + AluJo SINE Alu 10 298 -14 1417 209 47 82 chr12 115990729 115990827 -27795628 - Charlie4a DNA MER1_type -1850 111 11 2078 142 0 19 chr12 115990842 115991159 -27795296 - AluJo SINE Alu -1 311 1 202 351 117 0 chr12 115991187 115991281 -27795174 + L2 LINE L2 3143 3247 -25 369 268 102 13 chr12 115991298 115991455 -27795000 - L1M4 LINE L1 -1899 4247 4077 2432 67 0 3 chr12 115992234 115992532 -27793923 + AluY SINE Alu 1 297 -14 2103 114 0 0 chr12 115992544 115992817 -27793638 + AluSx SINE Alu 3 275 -37 2211 118 7 3 chr12 115992820 115993124 -27793331 + AluSx SINE Alu 2 306 -6 1799 174 172 16 chr12 115993180 115993617 -27792838 + MLT1D LTR MaLR 1 505 0 248 47 0 70 chr12 115994379 115994422 -27792033 + (CGGGGG)n Simple_repeat Simple_repeat 2 41 0 413 272 25 43 chr12 115994852 115995020 -27791435 - MIR SINE MIR -59 149 1 430 244 65 0 chr12 115995316 115995439 -27791016 + MIR SINE MIR 99 229 -33 277 285 136 41 chr12 115995789 115996010 -27790445 + L2 LINE L2 2419 2660 -654 242 298 149 71 chr12 115996030 115996480 -27789975 + L2 LINE L2 2804 3288 -25 2165 126 3 20 chr12 115997286 115997588 -27788867 + AluSx SINE Alu 1 297 -15 1780 177 26 13 chr12 115997611 115997916 -27788539 + AluJo SINE Alu 4 312 0 248 277 143 8 chr12 115997920 115998039 -27788416 + L1MC/D LINE L1 5684 5818 -1990 2356 184 40 30 chr12 115998087 115998587 -27787868 - MLT1D LTR MaLR 0 505 1 641 126 84 17 chr12 115999215 115999334 -27787121 - L1MB5 LINE L1 0 6174 6048 2104 133 20 82 chr12 115999402 115999651 -27786804 - L1MB5 LINE L1 -114 6060 5850 2449 97 0 3 chr12 115999651 115999962 -27786493 - AluSx SINE Alu -2 310 1 2104 133 20 82 chr12 115999962 116000165 -27786290 - L1MB5 LINE L1 -324 5850 5636 1728 100 4 4 chr12 116000603 116000832 -27785623 - AluSp SINE Alu -8 305 77 313 199 35 135 chr12 116000840 116000981 -27785474 + MIR SINE MIR 74 200 -62 361 224 9 84 chr12 116001026 116001091 -27785364 - MIR SINE MIR -143 119 51 1617 133 5 0 chr12 116001091 116001309 -27785146 + AluSx SINE Alu 1 219 -93 2168 129 0 0 chr12 116001309 116001601 -27784854 + AluSq SINE Alu 6 299 -14 361 224 9 84 chr12 116001601 116001641 -27784814 - MIR SINE MIR -209 53 21 195 42 0 0 chr12 116001910 116001934 -27784521 + (ATG)n Simple_repeat Simple_repeat 2 25 0 247 354 19 25 chr12 116002109 116002270 -27784185 + L1ME LINE L1 5485 5644 -477 372 153 12 159 chr12 116002341 116002504 -27783951 - MER104 DNA Tc2 -39 141 3 1945 149 0 41 chr12 116002640 116002955 -27783500 - AluSx SINE Alu -10 302 1 402 238 49 57 chr12 116003689 116003706 -27782749 + MIR SINE MIR 107 123 -139 2883 19 0 0 chr12 116003706 116004018 -27782437 - AluYb8 SINE Alu -6 312 1 402 238 49 57 chr12 116004018 116004122 -27782333 + MIR SINE MIR 123 227 -35 373 289 21 0 chr12 116004370 116004467 -27781988 + MER5B DNA MER1_type 63 161 -17 409 199 174 85 chr12 116004759 116004838 -27781617 - MER112 DNA MER1_type -8 252 181 2191 141 0 3 chr12 116004838 116005150 -27781305 + AluJb SINE Alu 1 311 -1 409 199 174 85 chr12 116005150 116005271 -27781184 - MER112 DNA MER1_type -79 181 34 582 266 45 6 chr12 116005376 116005553 -27780902 + MIR SINE MIR 33 216 -46 233 274 120 11 chr12 116006143 116006318 -27780137 - L2 LINE L2 -251 3021 2828 1893 151 17 10 chr12 116006371 116006663 -27779792 - AluJb SINE Alu -18 294 1 2422 223 31 20 chr12 116006683 116007239 -27779216 - MER68 LTR ERV1 0 562 1 21 67 0 0 chr12 116007653 116007683 -27778772 + AT_rich Low_complexity Low_complexity 1 30 0 896 120 0 0 chr12 116007831 116007948 -27778507 - AluSq/x SINE Alu -195 117 1 250 279 81 0 chr12 116007958 116008044 -27778411 - L2 LINE L2 0 3313 3221 1946 109 58 34 chr12 116008048 116008342 -27778113 + AluSx SINE Alu 1 301 -11 692 328 45 60 chr12 116008346 116008816 -27777639 - MLT1K LTR MaLR -113 475 13 978 185 6 0 chr12 116008922 116009084 -27777371 + FRAM SINE Alu 2 164 -2 2241 92 7 0 chr12 116009582 116009886 -27776569 + AluSx SINE Alu 1 306 0 2055 167 0 0 chr12 116010071 116010376 -27776079 - AluSx SINE Alu -7 305 1 2061 141 3 10 chr12 116010376 116010680 -27775775 - AluJo SINE Alu -8 304 3 30 0 0 0 chr12 116011104 116011134 -27775321 + AT_rich Low_complexity Low_complexity 1 30 0 1279 141 27 0 chr12 116011147 116011332 -27775123 + AluJo SINE Alu 85 274 -38 840 157 0 0 chr12 116011361 116011476 -27774979 - FLAM_A SINE Alu -17 116 2 420 228 73 17 chr12 116011484 116011620 -27774835 - MIR SINE MIR -64 144 2 2197 104 3 16 chr12 116011647 116011955 -27774500 + AluSx SINE Alu 1 304 -8 659 287 81 5 chr12 116011996 116012205 -27774250 - MIR SINE MIR -1 261 37 551 167 0 10 chr12 116012281 116012383 -27774072 - MER96 DNA MER1_type? -74 101 1 1198 182 128 57 chr12 116012383 116012550 -27773905 + LTR16C LTR ERVL 80 234 -257 231 61 0 0 chr12 116012550 116012583 -27773872 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1574 127 41 0 chr12 116012583 116012804 -27773651 - AluSx SINE Alu -27 285 56 1198 182 128 57 chr12 116012804 116013003 -27773452 + LTR16C LTR ERVL 233 473 -18 2254 111 7 7 chr12 116013140 116013446 -27773009 + AluSg SINE Alu 2 307 -3 1959 164 0 16 chr12 116013886 116014196 -27772259 - AluSx SINE Alu -7 305 1 328 271 37 50 chr12 116014231 116014380 -27772075 + L1MC4 LINE L1 6545 6633 -1152 659 271 5 37 chr12 116014488 116014676 -27771779 - MIR SINE MIR -47 215 34 450 271 116 67 chr12 116014714 116014998 -27771457 - MLT1I LTR MaLR -14 395 98 192 77 0 0 chr12 116015374 116015400 -27771055 + (TAA)n Simple_repeat Simple_repeat 3 28 0 238 246 112 75 chr12 116015401 116015535 -27770920 - MIR SINE MIR -7 255 117 2068 148 0 0 chr12 116015789 116016086 -27770369 - AluJo SINE Alu -15 297 1 2073 112 41 0 chr12 116016153 116016447 -27770008 + AluSx SINE Alu 1 306 -6 269 235 0 15 chr12 116016461 116016529 -27769926 - MLT1J LTR MaLR -31 480 414 565 126 32 0 chr12 116016531 116016626 -27769829 + MER4A LTR ERV1 1 98 -566 1824 120 3 41 chr12 116016626 116016985 -27769470 + MER4A LTR ERV1 261 664 0 913 293 11 7 chr12 116016992 116017265 -27769190 - MLT1J LTR MaLR -105 406 133 1533 153 27 44 chr12 116017284 116017415 -27769040 - MER41B LTR ERV1 0 635 503 1983 161 3 0 chr12 116017415 116017713 -27768742 + AluJb SINE Alu 1 299 -13 2266 118 0 0 chr12 116017718 116018024 -27768431 + AluY SINE Alu 1 306 -5 1533 153 27 44 chr12 116018024 116018180 -27768275 - MER41B LTR ERV1 -136 499 347 3805 92 31 38 chr12 116018185 116018763 -27767692 - LTR19B LTR ERV1 -6 574 1 576 62 12 0 chr12 116018763 116018843 -27767612 - MER41B LTR ERV1 -295 340 260 441 0 0 0 chr12 116018848 116018897 -27767558 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 244 0 0 chr12 116018897 116018942 -27767513 - MIR SINE MIR -149 113 69 1323 143 0 0 chr12 116018998 116019180 -27767275 - AluSg/x SINE Alu -11 301 120 797 170 0 0 chr12 116019180 116019315 -27767140 + MER41B LTR ERV1 139 273 -362 2384 90 0 10 chr12 116019317 116019628 -27766827 + AluY SINE Alu 1 308 -3 2366 92 0 25 chr12 116019791 116019927 -27766528 + AluSx SINE Alu 1 139 -173 2384 87 3 0 chr12 116019927 116020226 -27766229 + AluSg SINE Alu 1 300 -10 2366 92 0 25 chr12 116020226 116020404 -27766051 + AluSx SINE Alu 139 307 -5 723 258 0 6 chr12 116020546 116020713 -27765742 + MIR SINE MIR 49 214 -48 599 167 86 37 chr12 116020811 116020840 -27765615 - MER33 DNA MER1_type -2261 363 337 2169 106 24 0 chr12 116020840 116021133 -27765322 + AluSq SINE Alu 1 300 -13 599 167 86 37 chr12 116021133 116021265 -27765190 - MER33 DNA MER1_type -2287 337 194 2255 127 13 0 chr12 116021274 116021581 -27764874 + AluSq SINE Alu 1 311 -2 884 181 0 0 chr12 116021594 116021764 -27764691 + FLAM_C SINE Alu 1 170 0 323 111 0 32 chr12 116021851 116021914 -27764541 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 545 197 49 0 chr12 116021978 116022100 -27764355 - MER33 DNA MER1_type -191 133 6 847 286 36 0 chr12 116022598 116022822 -27763633 + MIR SINE MIR 2 233 -29 2265 107 0 3 chr12 116022917 116023215 -27763240 + AluSx SINE Alu 9 305 -7 208 324 15 15 chr12 116023221 116023289 -27763166 + MIR SINE MIR 30 97 -111 217 293 123 19 chr12 116023309 116023415 -27763040 - MIR SINE MIR 0 262 146 2315 81 3 0 chr12 116023434 116023717 -27762738 - AluSx SINE Alu -28 284 1 496 254 16 8 chr12 116023718 116023840 -27762615 - MIR SINE MIR -102 160 38 2117 146 0 0 chr12 116024053 116024355 -27762100 - AluSx SINE Alu 0 312 11 210 150 0 0 chr12 116024937 116024977 -27761478 + (GA)n Simple_repeat Simple_repeat 2 41 0 204 260 17 57 chr12 116025015 116025192 -27761263 + (CAGAGA)n Simple_repeat Simple_repeat 6 175 0 2047 150 0 0 chr12 116025192 116025499 -27760956 + AluJb SINE Alu 1 307 -5 291 261 54 15 chr12 116025571 116025701 -27760754 + (CAGAGA)n Simple_repeat Simple_repeat 4 138 0 912 130 0 0 chr12 116025738 116025869 -27760586 + FLAM_C SINE Alu 1 131 -2 490 259 59 6 chr12 116026236 116026406 -27760049 + MER117 DNA MER1_type 18 196 -1 295 161 48 0 chr12 116026442 116026504 -27759951 - MER115 DNA AcHobo -24 669 605 2105 141 23 0 chr12 116026515 116026820 -27759635 + AluJo SINE Alu 1 312 0 2259 111 7 0 chr12 116026849 116027155 -27759300 + AluSx SINE Alu 1 308 -4 345 247 0 26 chr12 116027520 116027597 -27758858 + L2 LINE L2 3197 3271 -1 2235 139 18 6 chr12 116027631 116027970 -27758485 - MER61A LTR ERV1 0 343 1 685 229 40 6 chr12 116028046 116028221 -27758234 - L2 LINE L2 -243 3070 2890 1387 145 0 0 chr12 116028222 116028422 -27758033 + AluSx SINE Alu 2 201 -111 521 246 62 22 chr12 116028455 116028634 -27757821 - L2 LINE L2 -411 2903 2718 228 191 222 0 chr12 116028635 116028698 -27757757 - L2 LINE L2 -704 2610 2534 1055 176 172 27 chr12 116028698 116029021 -27757434 + Tigger7 DNA MER2_type 1 2491 0 518 259 38 25 chr12 116029025 116029183 -27757272 - L2 LINE L2 -783 2531 2372 2164 81 47 3 chr12 116029220 116029516 -27756939 + AluSg SINE Alu 1 309 -1 2348 200 43 2 chr12 116029769 116030279 -27756176 + MER119 DNA MER1_type 3 533 -50 2036 130 10 23 chr12 116030303 116030604 -27755851 - AluSx SINE Alu -15 297 1 2107 131 0 25 chr12 116030617 116030931 -27755524 - AluSx SINE Alu -6 306 1 1920 84 8 0 chr12 116031214 116031453 -27755002 + AluJo SINE Alu 63 303 -9 869 109 8 23 chr12 116031700 116031828 -27754627 - FLAM_C SINE Alu -7 126 1 2084 132 30 0 chr12 116032167 116032470 -27753985 + AluSx SINE Alu 1 312 0 3029 150 30 79 chr12 116032556 116033082 -27753373 - MER21A LTR ERV1 -28 903 353 2076 107 7 0 chr12 116033082 116033353 -27753102 - AluSx SINE Alu -19 293 21 3029 150 30 79 chr12 116033353 116033767 -27752688 - MER21A LTR ERV1 -578 353 66 2414 102 0 0 chr12 116033767 116034070 -27752385 + AluSp SINE Alu 1 303 -10 3029 150 30 79 chr12 116034070 116034133 -27752322 - MER21A LTR ERV1 -865 66 1 1888 98 16 0 chr12 116034305 116034549 -27751906 + AluSx SINE Alu 59 306 -6 2639 65 0 0 chr12 116034552 116034861 -27751594 + AluY SINE Alu 1 309 -2 1057 292 79 12 chr12 116034905 116035309 -27751146 - MLT1J2 LTR MaLR -18 432 2 548 229 174 0 chr12 116035391 116035609 -27750846 - MLT2F LTR ERVL -2 661 406 531 246 70 12 chr12 116035636 116035807 -27750648 - MLT2F LTR ERVL -477 186 6 515 257 63 31 chr12 116035827 116036049 -27750406 + L2 LINE L2 2831 3059 -213 360 266 55 16 chr12 116036565 116036693 -27749762 + MLT1H LTR MaLR 146 278 -271 757 177 28 39 chr12 116036844 116037025 -27749430 - L1MB8 LINE L1 -1 6177 5999 430 223 14 14 chr12 116037445 116037584 -27748871 + MER113 DNA MER1_type? 6 144 -377 558 239 0 74 chr12 116037724 116037887 -27748568 + MER45A DNA AcHobo 17 167 -11 271 256 16 83 chr12 116038060 116038181 -27748274 - MER115 DNA AcHobo -3 690 578 2170 146 0 0 chr12 116038190 116038499 -27747956 - AluSx SINE Alu -3 309 1 1256 247 158 48 chr12 116038502 116038532 -27747923 - Zaphod DNA AcHobo -3445 586 561 2428 211 87 18 chr12 116038532 116039087 -27747368 - MLT1E LTR MaLR 0 593 1 1256 247 158 48 chr12 116039087 116039170 -27747285 - Zaphod DNA AcHobo -3470 561 488 1852 143 4 0 chr12 116039170 116039429 -27747026 - AluSx SINE Alu -52 260 1 1256 247 158 48 chr12 116039429 116039788 -27746667 - Zaphod DNA AcHobo -3543 488 61 1156 143 0 26 chr12 116039782 116039971 -27746484 - MLT1F LTR MaLR -297 245 62 * 1301 173 40 33 chr12 116039974 116040070 -27746385 + MLT1E1 LTR MaLR 1 95 -529 2597 67 0 10 chr12 116040070 116040384 -27746071 + AluY SINE Alu 1 311 0 1301 173 40 33 chr12 116040384 116040578 -27745877 + MLT1E1 LTR MaLR 95 253 -371 2024 163 0 0 chr12 116040578 116040878 -27745577 + AluSx SINE Alu 1 300 -12 284 256 13 13 chr12 116040926 116041004 -27745451 - L2 LINE L2 -1 3271 3194 1792 123 160 12 chr12 116041227 116041552 -27744903 + THE1C LTR MaLR 1 373 -2 1059 164 6 23 chr12 116041592 116041769 -27744686 - AluJo SINE Alu -15 297 124 2390 110 0 0 chr12 116042281 116042591 -27743864 - AluSx SINE Alu 0 312 3 1093 287 77 67 chr12 116042673 116043281 -27743174 + L2 LINE L2 2161 2762 -551 1025 187 0 0 chr12 116043281 116043447 -27743008 - FRAM SINE Alu 0 166 1 1093 287 77 67 chr12 116043447 116043818 -27742637 + L2 LINE L2 2762 3155 -158 2034 125 10 0 chr12 116043818 116044114 -27742341 - AluSx SINE Alu -13 299 1 1093 287 77 67 chr12 116044114 116044266 -27742189 + L2 LINE L2 3155 3304 -9 241 200 138 62 chr12 116044277 116044357 -27742098 - L2 LINE L2 0 3272 3187 230 204 153 6 chr12 116044354 116044456 -27741999 + MIR SINE MIR 29 151 -57 * 417 254 92 15 chr12 116044491 116044621 -27741834 + MIR SINE MIR 111 250 -12 375 248 20 0 chr12 116045098 116045199 -27741256 + L1MC4a LINE L1 5779 5881 -1927 1624 147 90 29 chr12 116045205 116045507 -27740948 - AluJb SINE Alu 0 312 1 23 33 0 0 chr12 116045507 116045537 -27740918 + AT_rich Low_complexity Low_complexity 1 30 0 2159 124 0 0 chr12 116045544 116045869 -27740586 + AluSx SINE Alu 1 312 0 1825 160 14 0 chr12 116046236 116046517 -27739938 + AluSx SINE Alu 1 285 -27 293 0 0 26 chr12 116046517 116046555 -27739900 + (TA)n Simple_repeat Simple_repeat 2 38 0 258 32 0 0 chr12 116046554 116046585 -27739870 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 292 198 27 81 chr12 116046597 116046708 -27739747 + L1ME3 LINE L1 6043 6147 -15 983 84 0 0 chr12 116046713 116046859 -27739596 - AluSp/q SINE Alu 0 312 167 2198 125 0 0 chr12 116046974 116047270 -27739185 - AluSx SINE Alu -16 296 1 22 35 0 0 chr12 116047415 116047444 -27739011 + AT_rich Low_complexity Low_complexity 1 29 0 1724 158 4 0 chr12 116047498 116047763 -27738692 - AluJb SINE Alu -5 307 42 624 171 98 16 chr12 116047786 116047909 -27738546 - FLAM_C SINE Alu 0 133 1 805 314 92 33 chr12 116047936 116048328 -27738127 + L2 LINE L2 2836 3250 -22 2258 97 20 13 chr12 116048362 116048662 -27737793 + AluSx SINE Alu 1 302 -10 727 218 62 32 chr12 116048741 116049175 -27737280 + MLT1D LTR MaLR 3 505 0 704 319 41 21 chr12 116049177 116049566 -27736889 + L1ME3A LINE L1 5555 5951 -219 1035 138 6 50 chr12 116049707 116049888 -27736567 - AluSg/x SINE Alu -6 306 134 2233 118 3 16 chr12 116049888 116050056 -27736399 - AluSx SINE Alu -10 302 138 2531 82 0 0 chr12 116050056 116050362 -27736093 - AluSc SINE Alu -3 306 1 2233 118 3 16 chr12 116050362 116050499 -27735956 - AluSx SINE Alu -174 138 1 740 71 0 102 chr12 116050500 116050627 -27735828 - MSTA LTR MaLR -2 426 313 318 182 0 0 chr12 116050624 116050679 -27735776 - MSTA LTR MaLR -372 56 2 * 374 239 15 31 chr12 116050703 116050833 -27735622 + MER94 DNA DNA 7 134 0 2119 131 7 0 chr12 116050905 116051196 -27735259 + AluSx SINE Alu 1 293 -19 245 233 17 0 chr12 116051320 116051380 -27735075 - L2 LINE L2 -16 3297 3237 1477 203 23 23 chr12 116051398 116051699 -27734756 + AluJo SINE Alu 1 301 -11 567 241 8 15 chr12 116051735 116051868 -27734587 - L2 LINE L2 -1229 2085 1954 645 295 60 44 chr12 116051900 116052001 -27734454 - L1ME3 LINE L1 -332 5830 5732 1814 152 51 0 chr12 116052001 116052297 -27734158 - AluJb SINE Alu -1 311 1 645 295 60 44 chr12 116052297 116052884 -27733571 - L1ME3 LINE L1 -430 5732 5123 1879 175 0 10 chr12 116052884 116053192 -27733263 - AluSx SINE Alu -1 311 7 645 295 60 44 chr12 116053192 116053306 -27733149 - L1ME3 LINE L1 -1039 5123 5012 204 97 0 0 chr12 116054282 116054313 -27732142 + (GGA)n Simple_repeat Simple_repeat 1 31 0 256 270 27 27 chr12 116054550 116054624 -27731831 - L2 LINE L2 -2 3311 3238 1411 215 105 15 chr12 116054649 116055053 -27731402 + L1MB8 LINE L1 5718 6161 -17 1707 82 5 0 chr12 116055317 116055523 -27730932 - AluSq SINE Alu -106 207 1 180 0 0 0 chr12 116055535 116055555 -27730900 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2142 105 18 0 chr12 116055555 116055832 -27730623 - AluSx SINE Alu -30 282 1 920 134 0 0 chr12 116055854 116055981 -27730474 - FLAM_C SINE Alu -6 127 1 191 279 0 0 chr12 116056773 116056816 -27729639 - L2 LINE L2 0 3313 3271 246 372 52 0 chr12 116057557 116057729 -27728726 - MIR SINE MIR -35 227 47 1485 162 88 31 chr12 116057974 116058094 -27728361 - L1MB5 LINE L1 0 6174 6062 2482 93 0 3 chr12 116058094 116058406 -27728049 - AluSq SINE Alu -2 311 1 1485 162 88 31 chr12 116058406 116058637 -27727818 - L1MB5 LINE L1 -112 6062 5803 209 327 19 10 chr12 116059138 116059242 -27727213 + (CCA)n Simple_repeat Simple_repeat 1 105 0 2284 125 0 0 chr12 116059614 116059911 -27726544 + AluSx SINE Alu 3 299 -13 2302 104 0 3 chr12 116060837 116061145 -27725310 + AluSq SINE Alu 1 307 -6 598 144 0 29 chr12 116061360 116061464 -27724991 - AluJ/FLAM SINE Alu -211 101 1 995 272 131 64 chr12 116061634 116061770 -27724685 - L1MC4 LINE L1 -184 7858 7733 2104 112 21 0 chr12 116061770 116062057 -27724398 - AluSx SINE Alu -19 293 1 995 272 131 64 chr12 116062057 116062136 -27724319 - L1MC4 LINE L1 -309 7733 7661 1983 165 3 0 chr12 116062136 116062439 -27724016 - AluJo SINE Alu -8 304 1 995 272 131 64 chr12 116062439 116063177 -27723278 - L1MC4 LINE L1 -381 7661 6840 2001 122 26 7 chr12 116063202 116063505 -27722950 - AluSx SINE Alu -3 309 1 584 165 41 25 chr12 116063607 116063728 -27722727 - FLAM_A SINE Alu -10 123 1 369 259 81 60 chr12 116063816 116064001 -27722454 - L1MB5 LINE L1 -2056 5752 5564 190 289 0 0 chr12 116064001 116064046 -27722409 + L2 LINE L2 3211 3255 -58 2016 129 7 20 chr12 116064618 116064921 -27721534 + AluJb SINE Alu 1 299 -13 2350 96 3 0 chr12 116065472 116065764 -27720691 + AluSp SINE Alu 1 293 -20 1950 145 17 0 chr12 116067346 116067636 -27718819 + AluJo SINE Alu 1 295 -17 293 211 74 32 chr12 116069125 116069220 -27717235 + L1MC5 LINE L1 7833 7931 -30 369 313 33 53 chr12 116070180 116070396 -27716059 - MIR SINE MIR -36 226 3 905 140 87 0 chr12 116070733 116070883 -27715572 - FRAM SINE Alu -13 163 1 2302 102 6 6 chr12 116070909 116071222 -27715233 - AluSq SINE Alu 0 313 1 366 218 122 64 chr12 116071393 116071549 -27714906 - MER103 DNA DNA -1 165 1 952 250 101 16 chr12 116071612 116071644 -27714811 + HAL1 LINE L1 2100 2128 -379 1827 156 10 0 chr12 116071644 116071932 -27714523 + AluJb SINE Alu 1 291 -21 952 250 101 16 chr12 116071932 116072275 -27714180 + HAL1 LINE L1 2128 2507 0 1936 139 10 39 chr12 116072413 116072560 -27713895 + AluJo SINE Alu 1 151 -161 2272 112 3 0 chr12 116072560 116072854 -27713601 + AluSx SINE Alu 1 295 -17 1936 139 10 39 chr12 116072854 116073016 -27713439 + AluJo SINE Alu 151 301 -11 317 264 76 7 chr12 116075320 116075464 -27710991 + L1ME4a LINE L1 5862 6015 -106 * 2475 142 56 16 chr12 116075462 116075948 -27710507 + L1MB7 LINE L1 5660 6164 -20 285 29 0 0 chr12 116076143 116076177 -27710278 + (CA)n Simple_repeat Simple_repeat 1 34 0 300 284 102 0 chr12 116077353 116077480 -27708975 + MIR SINE MIR 90 229 -33 294 302 23 62 chr12 116077561 116077690 -27708765 - L2 LINE L2 -2 3311 3188 207 296 0 0 chr12 116078274 116078318 -27708137 - MIR SINE MIR -188 74 31 217 309 27 27 chr12 116079314 116079424 -27707031 + L2 LINE L2 2551 2660 -654 1226 164 0 108 chr12 116079802 116080088 -27706367 - AluJb SINE Alu -14 298 44 25 0 0 0 chr12 116080501 116080526 -27705929 + AT_rich Low_complexity Low_complexity 1 25 0 943 136 0 0 chr12 116080936 116081068 -27705387 - AluSq/x SINE Alu -180 132 1 1452 251 112 4 chr12 116081281 116081764 -27704691 - L1MC4a LINE L1 -1849 5959 5425 2049 152 20 0 chr12 116081800 116082102 -27704353 - AluJb SINE Alu -4 308 1 346 272 150 6 chr12 116082320 116082493 -27703962 + MIR SINE MIR 8 205 -57 197 286 0 54 chr12 116082492 116082548 -27703907 + L2 LINE L2 3251 3303 -10 * 640 281 129 0 chr12 116082556 116082734 -27703721 + L3 LINE CR1 1375 1575 -2 592 88 0 0 chr12 116082777 116082857 -27703598 + MADE1 DNA Mariner 1 80 0 452 239 51 26 chr12 116083034 116083151 -27703304 - L2 LINE L2 -4 3268 3149 21 95 0 0 chr12 116083326 116083389 -27703066 + AT_rich Low_complexity Low_complexity 1 63 0 513 290 87 17 chr12 116083523 116083754 -27702701 + L1ME4a LINE L1 5492 5738 -383 2012 133 3 0 chr12 116083808 116084093 -27702362 - AluSx SINE Alu -9 303 18 1389 130 5 5 chr12 116084211 116084439 -27702016 + AluSg/x SINE Alu 82 309 0 425 216 149 27 chr12 116084459 116084607 -27701848 + MIR SINE MIR 94 259 -3 367 282 70 13 chr12 116084607 116084763 -27701692 + L1ME4a LINE L1 5844 6008 -113 6827 57 10 2 chr12 116085159 116086307 -27700148 - L1PA7 LINE L1 0 6154 4986 2332 107 0 0 chr12 116086756 116087055 -27699400 + AluSx SINE Alu 1 299 -13 2258 132 3 0 chr12 116088000 116088311 -27698144 + AluSx SINE Alu 1 312 0 2408 88 3 7 chr12 116088325 116088633 -27697822 + AluSp SINE Alu 1 307 -6 1259 110 0 0 chr12 116088643 116088806 -27697649 + AluSg/x SINE Alu 127 289 -23 21 0 0 0 chr12 116089038 116089059 -27697396 + AT_rich Low_complexity Low_complexity 1 21 0 1114 107 0 0 chr12 116089170 116089320 -27697135 + AluY SINE Alu 162 311 0 1684 108 0 0 chr12 116089345 116089567 -27696888 + AluSg SINE Alu 1 222 -88 588 274 49 27 chr12 116090376 116090599 -27695856 + MIR SINE MIR 6 233 -29 2055 102 29 0 chr12 116090651 116090962 -27695493 - AluSx SINE Alu 0 319 1 920 134 0 0 chr12 116090984 116091111 -27695344 - FLAM_C SINE Alu -6 127 1 424 271 28 57 chr12 116092435 116092612 -27693843 + MIR SINE MIR 59 230 -32 865 160 35 0 chr12 116092628 116092772 -27693683 + MIR SINE MIR 16 164 -98 2169 88 44 0 chr12 116092780 116093054 -27693401 + AluSx SINE Alu 9 294 -18 2065 131 0 3 chr12 116093091 116093373 -27693082 + AluSg1 SINE Alu 1 281 -28 544 221 76 17 chr12 116093404 116093576 -27692879 + MLT1C LTR MaLR 208 389 -78 1537 228 74 14 chr12 116093586 116094016 -27692439 - MLT1C LTR MaLR -6 461 6 386 244 177 12 chr12 116094050 116094214 -27692241 + L2 LINE L2 2538 2728 -586 520 291 114 0 chr12 116094813 116095050 -27691405 + Charlie8 DNA MER1_type 1 264 -2153 2137 116 10 0 chr12 116095151 116095443 -27691012 - AluSx SINE Alu -9 303 9 847 286 36 0 chr12 116095538 116095762 -27690693 - MIR SINE MIR -29 233 2 2418 86 0 0 chr12 116096055 116096358 -27690097 + AluY SINE Alu 1 303 -8 1996 112 32 4 chr12 116096366 116096644 -27689811 + AluSp SINE Alu 1 286 -27 2161 120 7 0 chr12 116096655 116096946 -27689509 + AluSx SINE Alu 1 293 -19 496 244 0 8 chr12 116097751 116097874 -27688581 + L1M3 LINE L1 5550 5671 -512 361 313 33 53 chr12 116099612 116099828 -27686627 - MIR SINE MIR -36 226 3 424 192 50 17 chr12 116100141 116100261 -27686194 - FRAM SINE Alu 0 176 53 27 0 0 0 chr12 116100949 116100976 -27685479 + AT_rich Low_complexity Low_complexity 1 27 0 1687 183 25 0 chr12 116101091 116101375 -27685080 + AluJb SINE Alu 1 291 -21 475 42 153 14 chr12 116101381 116101453 -27685002 + AluSq/x SINE Alu 50 131 -182 556 219 91 27 chr12 116101974 116102161 -27684294 - L1ME1 LINE L1 -36 6130 5932 289 207 281 16 chr12 116103530 116103651 -27682804 - MIR SINE MIR -77 185 33 189 370 12 0 chr12 116103789 116103870 -27682585 + L2 LINE L2 3232 3313 0 1102 176 14 53 chr12 116104629 116104913 -27681542 - AluSg SINE Alu -33 277 5 1432 125 177 0 chr12 116105124 116105372 -27681083 - AluJo SINE Alu -20 292 1 735 184 129 0 chr12 116107176 116107323 -27679132 + FRAM SINE Alu 1 166 0 2129 88 3 0 chr12 116108398 116108714 -27677741 + AluSq SINE Alu 1 317 0 1174 111 148 0 chr12 116108893 116109110 -27677345 + AluSg SINE Alu 45 293 -17 24 0 0 0 chr12 116109110 116109134 -27677321 + AT_rich Low_complexity Low_complexity 1 24 0 236 81 0 0 chr12 116109137 116109174 -27677281 + L1M4 LINE L1 4616 4652 -1494 1972 99 65 3 chr12 116109278 116109571 -27676884 + AluSp SINE Alu 1 311 -2 631 313 38 21 chr12 116110697 116110937 -27675518 - MIR SINE MIR -3 259 16 1672 102 53 11 chr12 116111624 116111890 -27674565 + AluSx SINE Alu 22 298 -14 876 113 8 15 chr12 116112712 116112845 -27673610 + AluSq/x SINE Alu 1 132 -180 473 255 67 6 chr12 116112987 116113141 -27673314 - MLT1H LTR MaLR -366 183 19 292 247 82 52 chr12 116113307 116113404 -27673051 + L2 LINE L2 3163 3262 -10 272 321 36 12 chr12 116113522 116113606 -27672849 + L2 LINE L2 3187 3272 0 347 286 93 44 chr12 116113787 116113969 -27672486 - MIR3 SINE MIR -12 196 6 182 330 80 10 chr12 116114709 116114809 -27671646 + MIR SINE MIR 50 156 -106 2739 216 36 9 chr12 116114979 116115318 -27671137 - L1MB7 LINE L1 -10 6174 5836 513 260 67 72 chr12 116115318 116115649 -27670806 - L1PA16 LINE L1 -338 5828 5500 1276 202 18 7 chr12 116116062 116116344 -27670111 - AluJo SINE Alu -25 287 3 528 283 155 23 chr12 116116347 116116527 -27669928 - L2 LINE L2 -8 3305 3150 1388 207 0 43 chr12 116116527 116116658 -27669797 + AluJb SINE Alu 1 136 -176 1996 111 17 0 chr12 116116658 116116947 -27669508 - AluSq SINE Alu -19 294 1 1388 207 0 43 chr12 116116947 116117120 -27669335 + AluJb SINE Alu 136 292 -20 528 283 155 23 chr12 116117120 116117243 -27669212 - L2 LINE L2 -163 3150 2962 1803 126 49 7 chr12 116117438 116117724 -27668731 - AluSx SINE Alu -14 298 1 1865 119 43 0 chr12 116118912 116119190 -27667265 - AluSx SINE Alu -22 290 1 598 220 8 38 chr12 116119239 116119371 -27667084 + FLAM_A SINE Alu 1 128 -5 559 96 0 0 chr12 116119669 116119742 -27666713 + AluS SINE Alu 2 74 -239 1984 116 20 13 chr12 116119780 116120081 -27666374 + AluSx SINE Alu 1 303 -9 1644 135 39 14 chr12 116120152 116120434 -27666021 + AluJo SINE Alu 1 289 -23 844 167 0 0 chr12 116120440 116120572 -27665883 + FLAM_C SINE Alu 1 132 -1 307 243 201 21 chr12 116120613 116120757 -27665698 - L1ME4a LINE L1 -190 5931 5762 1259 148 43 17 chr12 116120779 116121009 -27665446 + AluJo SINE Alu 3 238 -74 906 261 22 26 chr12 116121013 116121281 -27665174 - L1ME4a LINE L1 -376 5745 5479 675 290 166 24 chr12 116121770 116122326 -27664129 + L2 LINE L2 2615 3256 -16 2065 104 14 0 chr12 116122518 116122806 -27663649 - AluSq SINE Alu -21 292 1 214 273 0 0 chr12 116122807 116122862 -27663593 - L2 LINE L2 -8 3305 3251 2123 93 0 3 chr12 116122895 116123185 -27663270 + AluSg SINE Alu 6 294 -16 2028 111 27 0 chr12 116123557 116123854 -27662601 + AluSx SINE Alu 1 305 -7 2288 71 0 3 chr12 116124241 116124536 -27661919 - AluY SINE Alu -17 294 1 297 311 112 25 chr12 116125027 116125163 -27661292 - MER5B DNA MER1_type -25 164 6 1879 122 10 26 chr12 116125461 116125772 -27660683 - AluSq SINE Alu -7 306 1 1926 112 20 43 chr12 116125994 116126122 -27660333 + AluSx SINE Alu 3 132 -180 2276 72 3 0 chr12 116126122 116126412 -27660043 + AluY SINE Alu 1 291 -20 1926 112 20 43 chr12 116126412 116126587 -27659868 + AluSx SINE Alu 132 299 -13 2160 119 0 0 chr12 116126722 116127032 -27659423 + AluSg SINE Alu 1 310 0 1806 101 67 11 chr12 116127047 116127315 -27659140 + AluSx SINE Alu 13 295 -17 616 210 36 14 chr12 116127929 116128067 -27658388 + MIR SINE MIR 122 262 0 1785 129 30 10 chr12 116128115 116128410 -27658045 + AluJb SINE Alu 1 301 -11 1792 162 0 10 chr12 116128877 116129186 -27657269 + AluJo SINE Alu 1 306 -6 1655 109 87 0 chr12 116129381 116129646 -27656809 - AluSx SINE Alu -19 293 6 448 293 95 0 chr12 116130037 116130184 -27656271 + MIR SINE MIR 102 262 0 1061 105 0 0 chr12 116130792 116130945 -27655510 + AluJb SINE Alu 158 310 -2 211 296 14 14 chr12 116130947 116131018 -27655437 + MER5A DNA MER1_type 68 138 -51 1629 127 3 82 chr12 116131024 116131339 -27655116 - AluJb SINE Alu -22 290 1 882 118 0 0 chr12 116131604 116131731 -27654724 - FLAM_C SINE Alu -16 127 1 1492 129 58 4 chr12 116131977 116132217 -27654238 + AluJb SINE Alu 1 253 -59 2270 88 0 0 chr12 116132530 116132824 -27653631 + AluSc SINE Alu 1 294 -15 2171 106 0 0 chr12 116133018 116133311 -27653144 - AluSx SINE Alu -15 297 5 222 274 0 0 chr12 116133335 116133386 -27653069 + L3b LINE CR1 1532 1582 -1 968 166 0 6 chr12 116134074 116134237 -27652218 + AluJb SINE Alu 131 292 -20 2155 104 7 0 chr12 116134514 116134821 -27651634 - AluSg SINE Alu -1 309 1 2013 127 3 13 chr12 116135013 116135329 -27651126 - AluSq SINE Alu 0 313 1 2084 115 6 3 chr12 116135448 116135760 -27650695 + AluSq SINE Alu 1 313 0 987 160 5 32 chr12 116135983 116136171 -27650284 - AluJ SINE Alu 0 312 130 2129 119 3 10 chr12 116136176 116136488 -27649967 - AluSq SINE Alu -3 310 1 315 194 0 15 chr12 116136489 116136556 -27649899 - L1ME1 LINE L1 -56 6110 6045 717 193 15 7 chr12 116136558 116136693 -27649762 + AluJo SINE Alu 5 140 -172 2322 203 31 5 chr12 116136693 116137443 -27649012 - L1M3 LINE L1 -608 5575 4807 906 104 8 0 chr12 116137453 116137578 -27648877 - AluJ SINE Alu -186 126 1 2334 91 3 0 chr12 116137585 116137892 -27648563 - AluSp SINE Alu -5 308 1 1047 228 122 32 chr12 116137894 116138272 -27648183 - L1ME1 LINE L1 -341 5825 5414 2138 103 3 10 chr12 116138287 116138597 -27647858 + AluSg SINE Alu 1 308 -2 2260 86 7 0 chr12 116138901 116139205 -27647250 - AluSq SINE Alu -7 306 1 2161 107 0 22 chr12 116139209 116139528 -27646927 - AluSx SINE Alu 0 312 1 228 189 0 19 chr12 116139609 116139662 -27646793 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2066 120 0 0 chr12 116139716 116140007 -27646448 - AluSx SINE Alu -21 291 1 838 265 132 53 chr12 116140007 116140516 -27645939 - HAL1 LINE L1 -1947 560 12 587 139 79 0 chr12 116140592 116140693 -27645762 + L1MC1 LINE L1 6217 6325 -8 2069 128 0 7 chr12 116140693 116140998 -27645457 + AluSx SINE Alu 1 303 -9 2013 108 6 38 chr12 116141007 116141323 -27645132 + AluSx SINE Alu 1 306 -6 561 231 85 8 chr12 116141350 116141480 -27644975 + MIR SINE MIR 22 161 -101 1138 152 20 20 chr12 116141558 116141755 -27644700 + AluJo SINE Alu 86 282 -30 2156 102 3 3 chr12 116141779 116142082 -27644373 + AluSx SINE Alu 3 305 -7 343 202 154 39 chr12 116142352 116142456 -27643999 - L2 LINE L2 -5 3267 3152 2031 129 3 0 chr12 116142677 116142987 -27643468 - AluSx SINE Alu -1 311 1 2271 159 82 27 chr12 116143004 116143126 -27643329 + LTR24 LTR ERV1 5 119 -348 1903 107 15 0 chr12 116143126 116143387 -27643068 + AluSq SINE Alu 1 265 -48 2024 113 7 0 chr12 116143387 116143680 -27642775 + AluSg SINE Alu 8 302 -8 2271 159 82 27 chr12 116143680 116143995 -27642460 + LTR24 LTR ERV1 118 467 0 531 213 8 25 chr12 116144132 116144248 -27642207 + LTR37B LTR ERV1 3 116 -352 698 173 27 119 chr12 116144248 116144433 -27642022 - MER58B DNA MER1_type 0 341 174 766 108 77 39 chr12 116144436 116144566 -27641889 + AluJo SINE Alu 2 136 -176 577 192 118 96 chr12 116144614 116144693 -27641762 + LTR37B LTR ERV1 108 184 -284 1725 120 70 33 chr12 116144693 116144994 -27641461 - AluSx SINE Alu 0 312 1 577 192 118 96 chr12 116144994 116145209 -27641246 + LTR37B LTR ERV1 184 412 -56 1819 165 3 0 chr12 116145209 116145518 -27640937 - AluJb SINE Alu -2 310 1 577 192 118 96 chr12 116145518 116145545 -27640910 + LTR37B LTR ERV1 412 437 -31 2155 118 0 0 chr12 116145546 116145851 -27640604 - AluSq SINE Alu -8 305 1 2044 106 7 17 chr12 116145964 116146265 -27640190 + AluSx SINE Alu 1 298 -14 2160 122 11 30 chr12 116146267 116146629 -27639826 - L1MB3 LINE L1 -4 6179 5825 1999 132 30 0 chr12 116146633 116146936 -27639519 - AluSx SINE Alu 0 312 1 758 224 25 96 chr12 116147716 116147997 -27638458 + MER113 DNA MER1_type? 107 367 -154 1996 110 19 19 chr12 116148980 116149290 -27637165 + AluSx SINE Alu 1 310 -2 1064 180 140 40 chr12 116149446 116149718 -27636737 + AluJo SINE Alu 1 299 -3 191 59 0 59 chr12 116150288 116150322 -27636133 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1412 189 11 14 chr12 116150322 116150603 -27635852 - AluJo SINE Alu -15 297 18 432 274 53 9 chr12 116150827 116150940 -27635515 + MIR SINE MIR 34 151 -111 568 275 143 35 chr12 116151013 116151271 -27635184 + MLT1G1 LTR MaLR 12 297 -298 235 342 9 36 chr12 116151680 116151791 -27634664 + L2 LINE L2 3137 3244 -28 281 276 35 0 chr12 116151866 116151953 -27634502 - MIR SINE MIR -73 189 100 749 228 98 5 chr12 116151953 116152168 -27634287 - LTR16B LTR ERVL -8 456 222 1992 99 0 7 chr12 116152219 116152501 -27633954 + AluSc SINE Alu 1 280 -29 301 126 89 18 chr12 116152538 116152630 -27633825 + AluS SINE Alu 1 77 -231 3922 178 46 19 chr12 116152812 116153689 -27632766 + L1 LINE L1 2993 3892 -2254 181 94 0 78 chr12 116153691 116153755 -27632700 + (TA)n Simple_repeat Simple_repeat 2 60 0 414 98 163 0 chr12 116153801 116153924 -27632531 + AluY SINE Alu 2 144 -167 273 207 12 0 chr12 116154156 116154230 -27632225 - L1ME LINE L1 -339 5782 5704 2008 142 10 6 chr12 116154232 116154543 -27631912 + AluSx SINE Alu 1 312 0 903 180 0 0 chr12 116154568 116154707 -27631748 + FLAM_C SINE Alu 1 139 -4 516 267 24 21 chr12 116154711 116154901 -27631554 - L1ME LINE L1 -469 5652 5502 1446 89 5 11 chr12 116155524 116155714 -27630741 - AluSg SINE Alu -121 189 1 526 173 192 0 chr12 116155719 116155823 -27630632 - FRAM SINE Alu -22 154 31 188 378 22 0 chr12 116156212 116156302 -27630153 - MER5A DNA MER1_type -8 181 90 * 190 303 79 13 chr12 116156250 116156326 -27630129 + MER5A DNA MER1_type 57 137 -52 204 156 0 0 chr12 116156646 116156678 -27629777 + L2 LINE L2 3221 3252 -20 1438 146 6 100 chr12 116159878 116160207 -27626248 + AluJb SINE Alu 1 298 -14 287 244 82 15 chr12 116160214 116160349 -27626106 + L1ME4a LINE L1 5978 6121 0 2276 159 8 58 chr12 116161326 116161823 -27624632 + L1MB8 LINE L1 5695 6166 -12 353 101 76 0 chr12 116161823 116161896 -27624559 + L1MB7 LINE L1 6100 6184 0 3002 50 32 32 chr12 116162057 116162518 -27623937 + SVA Other Other 1 461 -925 1065 74 15 0 chr12 116162677 116162812 -27623643 - AluSp SINE Alu -176 137 1 594 180 137 0 chr12 116162812 116162951 -27623504 - Tigger1 DNA MER2_type -945 1473 1316 1884 130 0 0 chr12 116162951 116163213 -27623242 - AluSx SINE Alu -14 298 37 495 146 0 0 chr12 116163215 116163311 -27623144 + Charlie5 DNA MER1_type 2450 2545 -67 407 82 0 16 chr12 116163313 116163374 -27623081 - AluSx SINE Alu -8 302 243 1126 162 12 0 chr12 116163374 116163547 -27622908 - AluSx SINE Alu -137 175 1 293 235 12 0 chr12 116163550 116163631 -27622824 + Charlie5 DNA MER1_type 2543 2624 0 476 242 25 0 chr12 116163646 116163766 -27622689 + MER58A DNA MER1_type 5 127 0 481 333 48 29 chr12 116163886 116164096 -27622359 + MIR SINE MIR 47 260 -2 * 573 189 140 14 chr12 116164090 116164233 -27622222 + MIR SINE MIR 74 234 -28 243 0 0 0 chr12 116164263 116164290 -27622165 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2021 115 7 26 chr12 116164347 116164652 -27621803 - AluSx SINE Alu -13 299 1 1631 164 4 11 chr12 116166266 116166518 -27619937 + AluJb SINE Alu 32 283 -29 438 20 0 0 chr12 116166518 116166569 -27619886 + (CA)n Simple_repeat Simple_repeat 2 52 0 1631 164 4 11 chr12 116166569 116166584 -27619871 + AluJb SINE Alu 283 297 -15 189 0 0 0 chr12 116166782 116166803 -27619652 + (T)n Simple_repeat Simple_repeat 1 21 0 1226 94 6 0 chr12 116166825 116166984 -27619471 - AluSx SINE Alu -152 160 1 2155 107 4 0 chr12 116166985 116167266 -27619189 - AluSq SINE Alu -31 282 1 318 263 73 22 chr12 116167328 116167465 -27618990 + MIR SINE MIR 76 219 -43 372 324 53 13 chr12 116167851 116168169 -27618286 + L1ME LINE L1 5191 5526 -640 236 381 10 10 chr12 116169027 116169124 -27617331 + MIR SINE MIR 20 116 -92 1070 168 144 24 chr12 116170246 116170454 -27616001 - AluJo SINE Alu -79 233 1 443 157 78 20 chr12 116170455 116170557 -27615898 - MLT1D LTR MaLR -316 189 82 1091 166 6 0 chr12 116170571 116170746 -27615709 - AluJb SINE Alu -1 311 136 180 104 65 13 chr12 116171584 116171661 -27614794 + (TG)n Simple_repeat Simple_repeat 1 81 0 327 113 51 34 chr12 116171694 116171871 -27614584 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 390 132 57 0 chr12 116171990 116172149 -27614306 + (TG)n Simple_repeat Simple_repeat 1 168 0 404 143 71 12 chr12 116172153 116172321 -27614134 + (GTGTG)n Simple_repeat Simple_repeat 1 178 0 454 94 67 7 chr12 116172321 116172470 -27613985 + (TG)n Simple_repeat Simple_repeat 2 159 0 397 141 36 79 chr12 116172470 116172835 -27613620 + (GTGTG)n Simple_repeat Simple_repeat 1 349 0 198 80 60 0 chr12 116172847 116172897 -27613558 + (TG)n Simple_repeat Simple_repeat 2 54 0 276 89 98 0 chr12 116172933 116173056 -27613399 + (TG)n Simple_repeat Simple_repeat 1 135 0 323 302 24 24 chr12 116173237 116173363 -27613092 + MIR SINE MIR 31 156 -106 550 319 60 26 chr12 116173418 116173835 -27612620 + L2 LINE L2 2560 2998 -274 234 321 12 12 chr12 116174125 116174206 -27612249 - AluSc SINE Alu -43 256 176 972 182 0 0 chr12 116174426 116174585 -27611870 - AluJb SINE Alu -21 291 133 1096 230 50 57 chr12 116174596 116174676 -27611779 - L1ME2 LINE L1 -266 5898 5819 2212 111 3 25 chr12 116174676 116174991 -27611464 - AluJb SINE Alu -4 308 1 1096 230 50 57 chr12 116174991 116175314 -27611141 - L1ME2 LINE L1 -345 5819 5498 282 267 30 10 chr12 116175346 116175447 -27611008 - AluSg/x SINE Alu -6 294 192 345 245 0 0 chr12 116175575 116175677 -27610778 + (CA)n Simple_repeat Simple_repeat 1 102 0 334 167 0 0 chr12 116176831 116176891 -27609564 + Charlie1 DNA MER1_type 167 226 -2535 * 552 243 7 7 chr12 116176889 116177029 -27609426 + Charlie1 DNA MER1_type 2622 2761 0 207 0 0 0 chr12 116178126 116178149 -27608306 + (A)n Simple_repeat Simple_repeat 1 23 0 248 143 41 0 chr12 116178332 116178381 -27608074 - HSMAR1 DNA Mariner -2 1285 1235 1033 133 18 68 chr12 116178385 116178655 -27607800 + L1M4 LINE L1 5531 5781 -399 360 43 0 0 chr12 116182334 116182380 -27604075 + (CA)n Simple_repeat Simple_repeat 2 47 0 369 280 56 8 chr12 116185042 116185167 -27601288 - MIR SINE MIR -81 181 51 201 288 68 0 chr12 116186656 116186715 -27599740 - MIR SINE MIR -90 172 110 240 35 0 0 chr12 116187194 116187223 -27599232 + (TA)n Simple_repeat Simple_repeat 1 29 0 468 35 0 0 chr12 116187226 116187284 -27599171 + (GA)n Simple_repeat Simple_repeat 2 59 0 199 361 12 0 chr12 116187286 116187369 -27599086 - MIR SINE MIR -25 237 154 2368 83 0 20 chr12 116188502 116188803 -27597652 + AluSx SINE Alu 1 295 -17 627 291 83 17 chr12 116188930 116189219 -27597236 - L1MC/D LINE L1 -2109 5699 5392 206 304 13 13 chr12 116189761 116189840 -27596615 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 304 246 115 39 chr12 116189961 116190091 -27596364 + L2 LINE L2 3133 3272 0 187 345 18 0 chr12 116190103 116190158 -27596297 + MIR SINE MIR 83 138 -124 3158 156 30 51 chr12 116191374 116192074 -27594381 - L1MB2 LINE L1 -2 6169 5485 588 168 19 0 chr12 116192092 116192199 -27594256 - AluSg/x SINE Alu -1 308 200 2252 135 0 0 chr12 116192214 116192526 -27593929 - AluSp SINE Alu -1 312 1 1384 156 0 5 chr12 116193043 116193254 -27593201 - AluJo SINE Alu -19 293 84 2120 122 3 29 chr12 116193398 116193513 -27592942 + AluSx SINE Alu 1 117 -195 2417 105 0 0 chr12 116193513 116193817 -27592638 + AluSx SINE Alu 1 304 -8 2120 122 3 29 chr12 116193817 116194013 -27592442 + AluSx SINE Alu 117 304 -8 320 318 38 48 chr12 116194588 116194775 -27591680 + MIR SINE MIR 14 195 -63 1765 176 57 0 chr12 116195383 116195719 -27590736 - MLT1D LTR MaLR 0 505 151 278 272 211 0 chr12 116198016 116198130 -27588325 - MIR SINE MIR -40 222 85 2063 135 0 0 chr12 116198152 116198461 -27587994 - AluSx SINE Alu 0 309 1 419 240 144 0 chr12 116200342 116200467 -27585988 - L2 LINE L2 -5 3267 3125 663 207 70 84 chr12 116200523 116200630 -27585825 + MIR SINE MIR 53 157 -105 2326 95 0 0 chr12 116200630 116200924 -27585531 + AluSg SINE Alu 3 296 -14 663 207 70 84 chr12 116200924 116201029 -27585426 + MIR SINE MIR 157 262 0 209 269 125 58 chr12 116201054 116201158 -27585297 + MIR SINE MIR 18 128 -80 304 85 0 0 chr12 116201208 116201255 -27585200 + Alu SINE Alu 254 300 -2 2152 127 7 3 chr12 116201277 116201584 -27584871 + AluJb SINE Alu 1 308 -4 429 167 47 13 chr12 116201588 116201847 -27584608 + AluJo SINE Alu 1 311 -1 2654 59 0 0 chr12 116201926 116202233 -27584222 - AluY SINE Alu -4 307 1 374 309 111 19 chr12 116203061 116203268 -27583187 - L1ME4a LINE L1 -28 6093 5868 2279 97 3 7 chr12 116203331 116203631 -27582824 + AluY SINE Alu 1 299 -12 1079 164 6 0 chr12 116203631 116203790 -27582665 + AluSg/x SINE Alu 132 291 -19 642 163 0 0 chr12 116203790 116203888 -27582567 + AluSg/x SINE Alu 134 231 -81 2409 104 0 0 chr12 116204445 116204754 -27581701 + AluSg SINE Alu 1 309 -1 1931 135 13 33 chr12 116205326 116205629 -27580826 + AluJo SINE Alu 1 297 -15 2129 123 0 3 chr12 116205632 116205924 -27580531 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr12 116205928 116205956 -27580499 + AT_rich Low_complexity Low_complexity 1 28 0 3258 148 17 2 chr12 116206034 116206621 -27579834 - L1M4c LINE L1 -4940 1444 849 2006 132 6 35 chr12 116206627 116206945 -27579510 - AluSx SINE Alu -3 309 1 792 203 0 0 chr12 116206982 116207100 -27579355 - FLAM_C SINE Alu -15 118 1 253 182 0 0 chr12 116207100 116207155 -27579300 - L1M4c LINE L1 -5520 864 810 2400 64 3 0 chr12 116207155 116207452 -27579003 - AluY SINE Alu -13 298 1 1176 60 0 0 chr12 116207452 116207586 -27578869 - AluY SINE Alu -177 134 1 3715 153 78 42 chr12 116207586 116207751 -27578704 - L1M4c LINE L1 -5571 813 655 1576 186 36 4 chr12 116207751 116208031 -27578424 + AluJb SINE Alu 1 289 -23 3715 153 78 42 chr12 116208031 116208637 -27577818 - L1M4c LINE L1 -5729 655 14 2077 204 33 69 chr12 116208725 116209275 -27577180 - MLT2B3 LTR ERVL -24 530 1 357 304 51 28 chr12 116209411 116209628 -27576827 - L1 LINE L1 -1934 4212 3991 1196 140 0 0 chr12 116209699 116209870 -27576585 - AluSg/x SINE Alu -6 306 136 1386 69 0 6 chr12 116209993 116210166 -27576289 + AluY SINE Alu 140 311 0 22 0 0 0 chr12 116210367 116210389 -27576066 + AT_rich Low_complexity Low_complexity 1 22 0 1076 120 0 24 chr12 116211444 116211611 -27574844 + AluJb SINE Alu 134 296 -16 2218 89 24 0 chr12 116211611 116211904 -27574551 + AluSp SINE Alu 1 300 -13 1988 128 7 3 chr12 116211915 116212203 -27574252 + AluSx SINE Alu 1 289 -23 898 142 0 8 chr12 116212484 116212618 -27573837 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr12 116213068 116213090 -27573365 + AT_rich Low_complexity Low_complexity 1 22 0 2175 104 3 3 chr12 116214114 116214411 -27572044 + AluSx SINE Alu 1 297 -15 1699 164 0 57 chr12 116214424 116214742 -27571713 + AluJo SINE Alu 1 300 -12 1099 145 11 6 chr12 116215251 116215430 -27571025 + AluJb SINE Alu 1 180 -132 621 124 0 0 chr12 116215643 116215740 -27570715 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 1572 173 15 4 chr12 116215747 116216019 -27570436 - AluJo SINE Alu -37 275 1 238 232 113 53 chr12 116216019 116216170 -27570285 + L1M4 LINE L1 2219 2378 -3768 719 242 8 0 chr12 116216238 116216366 -27570089 - FLAM_A SINE Alu -3 130 2 2185 131 0 3 chr12 116216394 116216700 -27569755 - AluSx SINE Alu -7 305 1 812 136 24 59 chr12 116216708 116216877 -27569578 - L1MB4 LINE L1 0 6180 6018 252 159 0 0 chr12 116216930 116216974 -27569481 + L1M4 LINE L1 2653 2696 -3450 795 311 98 27 chr12 116216985 116217432 -27569023 + HAL1b LINE L1 397 875 -473 203 250 0 19 chr12 116217710 116217762 -27568693 + GA-rich Low_complexity Low_complexity 2 52 0 23 0 0 0 chr12 116217829 116217852 -27568603 + AT_rich Low_complexity Low_complexity 1 23 0 817 107 29 36 chr12 116218367 116218507 -27567948 + FLAM_C SINE Alu 5 143 0 2976 138 17 0 chr12 116218683 116219104 -27567351 + MSTA LTR MaLR 1 428 0 1809 163 7 11 chr12 116219774 116220057 -27566398 - AluJo SINE Alu -30 282 1 3257 124 20 0 chr12 116220359 116220851 -27565604 + Tigger3(Golem) DNA MER2_type 2528 3029 0 407 243 201 71 chr12 116220851 116221090 -27565365 + L1MEd LINE L1 62 331 -5788 1296 281 86 31 chr12 116221514 116221907 -27564548 + L1MEd LINE L1 474 844 -5275 2163 120 7 0 chr12 116221907 116222215 -27564240 + AluSx SINE Alu 1 310 -2 1296 281 86 31 chr12 116222215 116222541 -27563914 + L1MEd LINE L1 844 1233 -4886 2426 91 3 0 chr12 116223007 116223316 -27563139 + AluSp SINE Alu 1 310 -3 261 0 0 0 chr12 116223434 116223463 -27562992 + (TA)n Simple_repeat Simple_repeat 1 29 0 463 208 0 0 chr12 116223651 116223728 -27562727 - L1MC5 LINE L1 -1144 6817 6741 22 0 0 0 chr12 116224751 116224773 -27561682 + AT_rich Low_complexity Low_complexity 1 22 0 259 213 12 38 chr12 116225107 116225187 -27561268 + L1ME4a LINE L1 5988 6065 -56 1282 137 26 56 chr12 116225195 116225429 -27561026 - AluJo SINE Alu -1 311 85 288 0 0 0 chr12 116225915 116225947 -27560508 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1758 140 14 28 chr12 116225950 116226236 -27560219 - AluJo SINE Alu -30 282 1 1649 113 27 58 chr12 116226261 116226518 -27559937 - AluSx SINE Alu -14 298 50 227 269 115 13 chr12 116226529 116226607 -27559848 + L2 LINE L2 3187 3272 0 198 278 56 0 chr12 116227033 116227105 -27559350 + MIR SINE MIR 174 249 -13 2349 96 0 0 chr12 116227157 116227459 -27558996 - AluSx SINE Alu -10 302 1 23 0 0 0 chr12 116227701 116227724 -27558731 + AT_rich Low_complexity Low_complexity 1 23 0 551 284 96 43 chr12 116228129 116228427 -27558028 + L1MC4a LINE L1 5596 5916 -205 1594 202 7 14 chr12 116228427 116228724 -27557731 - AluJb SINE Alu -15 297 3 551 284 96 43 chr12 116228724 116228776 -27557679 + L1MC4a LINE L1 5916 5964 -157 228 208 57 0 chr12 116228747 116228800 -27557655 + L1MD3 LINE L1 6619 6674 -1321 * 31 82 0 0 chr12 116228987 116229060 -27557395 + AT_rich Low_complexity Low_complexity 1 73 0 2003 74 0 8 chr12 116229129 116229387 -27557068 + AluY SINE Alu 45 300 -11 912 155 30 35 chr12 116229536 116229736 -27556719 - HAL1b LINE L1 -240 1108 910 28 0 0 0 chr12 116230510 116230538 -27555917 + AT_rich Low_complexity Low_complexity 1 28 0 1053 180 0 0 chr12 116230757 116230935 -27555520 - AluSg/x SINE Alu -9 303 126 1060 149 48 5 chr12 116231382 116231570 -27554885 + L1MB4 LINE L1 5985 6180 0 2056 132 0 0 chr12 116232216 116232504 -27553951 - AluSx SINE Alu -24 288 1 928 316 83 34 chr12 116232508 116233203 -27553252 - L2 LINE L2 -14 3299 2551 1046 134 0 0 chr12 116233317 116233459 -27552996 - FRAM SINE Alu -21 155 14 451 202 0 40 chr12 116233494 116233593 -27552862 - HAL1 LINE L1 -619 1888 1794 605 319 63 45 chr12 116233783 116234118 -27552337 - L2 LINE L2 -18 3254 2914 2187 114 0 0 chr12 116234157 116234472 -27551983 - AluSx SINE Alu 0 315 1 2155 144 59 13 chr12 116234739 116235114 -27551341 - MSTB LTR MaLR -32 394 3 710 195 18 0 chr12 116235115 116235228 -27551227 - FLAM_C SINE Alu -18 115 1 1248 96 0 0 chr12 116235234 116235390 -27551065 - AluSp SINE Alu -14 299 144 2235 101 3 3 chr12 116237021 116237319 -27549136 - AluSp SINE Alu -15 298 1 2117 128 7 3 chr12 116237537 116237834 -27548621 - AluSx SINE Alu -14 298 1 592 166 53 0 chr12 116237834 116237985 -27548470 + Tigger3(Golem) DNA MER2_type 2366 2524 -505 2340 103 0 0 chr12 116237987 116238287 -27548168 - AluSx SINE Alu -12 300 1 2230 126 0 0 chr12 116238705 116239007 -27547448 + AluSx SINE Alu 1 302 -10 2303 239 45 60 chr12 116239549 116239853 -27546602 - L2 LINE L2 -734 2580 2273 2112 119 3 0 chr12 116239853 116240165 -27546290 + AluSq SINE Alu 1 313 0 2303 239 45 60 chr12 116240165 116240559 -27545896 - L2 LINE L2 -1041 2273 1892 2231 83 13 33 chr12 116240559 116240859 -27545596 - AluSg SINE Alu -16 294 1 2303 239 45 60 chr12 116240859 116240961 -27545494 - L2 LINE L2 -1422 1892 1790 2417 75 0 7 chr12 116241145 116241451 -27545004 - AluY SINE Alu -7 304 1 2038 134 20 3 chr12 116241937 116242243 -27544212 + AluSq SINE Alu 1 311 -2 291 140 140 0 chr12 116242244 116242301 -27544154 + MLT1K LTR MaLR 401 465 -123 306 340 160 0 chr12 116242418 116242624 -27543831 + L3 LINE CR1 201 439 -1138 414 78 0 0 chr12 116242629 116242680 -27543775 - Alu SINE Alu -21 290 240 1702 138 13 39 chr12 116242871 116243182 -27543273 + AluSx SINE Alu 5 307 -5 344 316 80 43 chr12 116243406 116243707 -27542748 - L2 LINE L2 -36 3236 2925 2139 135 3 6 chr12 116244325 116244699 -27541756 + AluSx SINE Alu 1 373 0 315 0 0 0 chr12 116245388 116245423 -27541032 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 878 120 0 0 chr12 116245428 116245545 -27540910 - FLAM_C SINE Alu -26 117 1 1412 207 74 0 chr12 116245718 116245989 -27540466 + AluJo SINE Alu 1 291 -21 2250 126 0 0 chr12 116245993 116246303 -27540152 + AluSq SINE Alu 3 312 -1 1047 124 0 0 chr12 116246321 116246466 -27539989 + AluSg/x SINE Alu 160 304 -6 259 273 54 34 chr12 116246474 116246771 -27539684 + L1MEc LINE L1 897 1199 -5197 1198 166 19 66 chr12 116246896 116247167 -27539288 + AluJb SINE Alu 1 258 -54 2294 91 3 13 chr12 116247344 116247651 -27538804 + AluSq SINE Alu 1 304 -9 303 169 247 0 chr12 116248025 116248102 -27538353 + L2 LINE L2 3203 3298 -15 37 93 0 0 chr12 116252405 116252512 -27533943 + GC_rich Low_complexity Low_complexity 1 107 0 525 286 50 100 chr12 116254024 116254141 -27532314 + L2 LINE L2 2952 3073 -240 1975 127 0 33 chr12 116254141 116254441 -27532014 + AluJo SINE Alu 3 292 -20 525 286 50 100 chr12 116254441 116254505 -27531950 + L2 LINE L2 3073 3139 -174 2056 141 10 0 chr12 116254505 116254810 -27531645 - AluSx SINE Alu -4 308 1 525 286 50 100 chr12 116254810 116255008 -27531447 + L2 LINE L2 3139 3313 0 538 285 116 42 chr12 116255866 116256070 -27530385 - L3 LINE CR1 -155 1422 1190 2087 103 0 23 chr12 116256070 116256370 -27530085 + AluSg SINE Alu 1 293 -17 538 285 116 42 chr12 116256370 116256449 -27530006 - L3 LINE CR1 -387 1190 1118 455 102 4 3 chr12 116256474 116256700 -27529755 + AluSx SINE Alu 1 299 -11 517 293 111 22 chr12 116256762 116257032 -27529423 - L3 LINE CR1 -623 954 661 187 268 89 18 chr12 116257470 116257526 -27528929 - L3 LINE CR1 -1060 517 458 2113 104 0 3 chr12 116257526 116257823 -27528632 + AluSx SINE Alu 1 296 -16 2242 103 6 0 chr12 116257824 116258135 -27528320 + AluSp SINE Alu 1 313 0 273 327 63 31 chr12 116259122 116259281 -27527174 - L3 LINE CR1 -30 1547 1384 848 224 60 17 chr12 116259416 116259616 -27526839 - MIR SINE MIR -16 246 40 320 217 15 2 chr12 116259939 116260012 -27526443 - L1ME LINE L1 -394 5770 5696 2016 112 13 25 chr12 116260038 116260352 -27526103 + AluSg SINE Alu 1 310 0 863 264 111 19 chr12 116260355 116260577 -27525878 + L1MEc LINE L1 1255 1455 -4941 342 0 0 0 chr12 116260577 116260615 -27525840 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 863 264 111 19 chr12 116260615 116260904 -27525551 + L1MEc LINE L1 1455 1813 -4583 1540 159 47 22 chr12 116260960 116261236 -27525219 + AluJo SINE Alu 7 289 -23 312 285 23 99 chr12 116261249 116261364 -27525091 + L1MEc LINE L1 1913 2012 -4384 2064 105 0 23 chr12 116261364 116261668 -27524787 + AluSc SINE Alu 1 297 -12 312 285 23 99 chr12 116261668 116261724 -27524731 + L1MEc LINE L1 2012 2071 -4325 1568 285 31 40 chr12 116261724 116261873 -27524582 + HERVL LTR ERVL 51 200 -4796 1962 257 15 28 chr12 116261873 116262343 -27524112 + LTR16B LTR ERVL 1 464 0 1568 285 31 40 chr12 116262343 116262484 -27523971 + HERVL LTR ERVL 200 341 -4655 2335 76 0 0 chr12 116262484 116262785 -27523670 - AluY SINE Alu -10 301 1 1568 285 31 40 chr12 116262785 116263075 -27523380 + HERVL LTR ERVL 341 627 -4369 * 2813 334 52 23 chr12 116263070 116264558 -27521897 + HERVL LTR ERVL 3843 4906 -90 1709 188 123 24 chr12 116264659 116265073 -27521382 + LTR16A1 LTR ERVL 1 455 -2 1621 227 63 7 chr12 116265073 116265536 -27520919 + L1MEc LINE L1 2544 3032 -3183 43 71 0 0 chr12 116266550 116266635 -27519820 + AT_rich Low_complexity Low_complexity 1 85 0 394 319 7 71 chr12 116266753 116266894 -27519561 + L2 LINE L2 3137 3268 -4 3450 179 31 61 chr12 116267073 116267118 -27519337 - L1M4 LINE L1 -1608 4538 4493 2253 99 3 0 chr12 116267118 116267421 -27519034 - AluSp SINE Alu -5 308 5 3450 179 31 61 chr12 116267421 116267436 -27519019 - L1M4 LINE L1 -1653 4493 4479 2266 74 0 0 chr12 116267436 116267743 -27518712 - AluY SINE Alu 0 307 1 3450 179 31 61 chr12 116267743 116268494 -27517961 - L1M4 LINE L1 -1667 4479 3752 1986 141 3 3 chr12 116268494 116268806 -27517649 - AluSx SINE Alu 0 312 1 3450 179 31 61 chr12 116268806 116268893 -27517562 - L1M4 LINE L1 -2394 3752 3664 811 298 182 22 chr12 116268962 116269375 -27517080 - L2 LINE L2 0 3313 2835 1035 105 0 20 chr12 116269379 116269555 -27516900 + AluSq SINE Alu 136 308 0 1210 275 123 39 chr12 116269576 116269622 -27516833 - L2 LINE L2 -493 2821 2780 1868 104 4 0 chr12 116269622 116269908 -27516547 - AluSx SINE Alu 0 312 33 1210 275 123 39 chr12 116269908 116270421 -27516034 - L2 LINE L2 -534 2780 2215 1597 148 28 28 chr12 116270975 116271258 -27515197 + AluJb SINE Alu 1 283 -29 2052 127 0 3 chr12 116271290 116271589 -27514866 + AluSx SINE Alu 1 298 -14 464 133 62 18 chr12 116271604 116271687 -27514768 + L1MB3 LINE L1 6066 6157 -26 2194 96 3 0 chr12 116271687 116271980 -27514475 - AluSp SINE Alu -19 294 1 464 133 62 18 chr12 116271980 116272009 -27514446 + L1MB3 LINE L1 6157 6183 0 1280 156 0 5 chr12 116272497 116272708 -27513747 - AluJo SINE Alu -19 293 84 1980 121 3 29 chr12 116272852 116272967 -27513488 + AluSx SINE Alu 1 117 -195 2266 105 0 0 chr12 116272967 116273271 -27513184 + AluSx SINE Alu 1 304 -8 1980 121 3 29 chr12 116273271 116273468 -27512987 + AluSx SINE Alu 117 305 -7 315 323 105 0 chr12 116274097 116274230 -27512225 + MIR SINE MIR 49 195 -67 1869 176 57 0 chr12 116274838 116275174 -27511281 - MLT1D LTR MaLR 0 505 151 276 272 211 0 chr12 116277471 116277585 -27508870 - MIR SINE MIR -40 222 85 1927 135 0 0 chr12 116277607 116277916 -27508539 - AluSx SINE Alu 0 309 1 414 240 144 0 chr12 116279797 116279922 -27506533 - L2 LINE L2 -5 3267 3125 623 188 67 129 chr12 116279978 116280085 -27506370 + MIR SINE MIR 53 140 -122 2181 85 0 0 chr12 116280085 116280368 -27506087 + AluSg SINE Alu 3 285 -25 623 188 67 129 chr12 116280368 116280484 -27505971 + MIR SINE MIR 140 262 0 206 269 125 58 chr12 116280509 116280613 -27505842 + MIR SINE MIR 18 128 -80 320 85 0 0 chr12 116280663 116280710 -27505745 + Alu SINE Alu 254 300 -2 2000 127 7 3 chr12 116280732 116281039 -27505416 + AluJb SINE Alu 1 308 -4 429 167 47 13 chr12 116281043 116281302 -27505153 + AluJo SINE Alu 1 311 -1 2504 59 0 0 chr12 116281381 116281688 -27504767 - AluY SINE Alu -4 307 1 364 309 116 24 chr12 116282515 116282722 -27503733 - L1ME4a LINE L1 -28 6093 5868 2135 97 3 7 chr12 116282785 116283085 -27503370 + AluY SINE Alu 1 299 -12 1346 161 21 92 chr12 116283087 116283422 -27503033 + AluSx SINE Alu 1 311 -1 2164 104 10 3 chr12 116283466 116283774 -27502681 - AluSq SINE Alu -3 310 1 1703 146 71 4 chr12 116283817 116284098 -27502357 - AluJb SINE Alu -12 300 1 293 217 0 29 chr12 116284118 116284187 -27502268 - MIR SINE MIR -36 226 160 453 156 26 0 chr12 116284187 116284264 -27502191 - AluJ/FLAM SINE Alu -232 80 2 1799 164 17 3 chr12 116284272 116284570 -27501885 - AluJb SINE Alu -10 302 1 510 260 119 53 chr12 116284583 116284737 -27501718 - L1ME4a LINE L1 -301 5820 5678 2403 63 3 0 chr12 116284737 116285036 -27501419 - AluSp SINE Alu -13 300 1 510 260 119 53 chr12 116285036 116285166 -27501289 - L1ME4a LINE L1 -443 5678 5517 275 258 41 10 chr12 116285189 116285286 -27501169 - L1ME4a LINE L1 -716 5458 5359 315 0 0 0 chr12 116285335 116285370 -27501085 + (TG)n Simple_repeat Simple_repeat 2 36 0 2215 119 0 0 chr12 116285373 116285684 -27500771 - AluSx SINE Alu -1 311 1 1811 124 11 0 chr12 116286457 116286723 -27499732 - AluSx SINE Alu -43 269 1 2150 110 0 3 chr12 116287092 116287393 -27499062 + AluSg SINE Alu 1 300 -10 1644 155 33 95 chr12 116287762 116288052 -27498403 - MLT2C1 LTR ERVL -3 394 136 2021 141 0 0 chr12 116288052 116288351 -27498104 - AluJb SINE Alu -13 299 1 1644 155 33 95 chr12 116288351 116288480 -27497975 - MLT2C1 LTR ERVL -261 136 1 749 216 79 87 chr12 116288523 116288926 -27497529 - MER113 DNA MER1_type? 0 521 122 2082 112 3 0 chr12 116288926 116289213 -27497242 + AluSx SINE Alu 1 288 -24 2124 123 0 7 chr12 116289249 116289559 -27496896 + AluJb SINE Alu 5 312 0 243 0 0 0 chr12 116289560 116289587 -27496868 + (TA)n Simple_repeat Simple_repeat 1 27 0 254 235 12 35 chr12 116289722 116289807 -27496648 + L1MC5 LINE L1 7835 7917 -44 2408 64 0 10 chr12 116289829 116290141 -27496314 + AluY SINE Alu 1 309 -2 2053 61 4 4 chr12 116290152 116290415 -27496040 + AluSp SINE Alu 40 302 -11 952 156 69 6 chr12 116290694 116290867 -27495588 - AluJb SINE Alu -11 301 118 800 156 7 7 chr12 116290868 116291003 -27495452 + AluSg/x SINE Alu 171 305 -7 1769 114 0 117 chr12 116291365 116291698 -27494757 + AluJo SINE Alu 1 294 -8 1854 153 41 25 chr12 116291699 116292065 -27494390 + L1MB2 LINE L1 5800 6171 0 2308 76 3 0 chr12 116292739 116293040 -27493415 + AluSx SINE Alu 1 302 -10 2162 95 10 0 chr12 116293206 116293500 -27492955 + AluSx SINE Alu 1 297 -15 1656 157 0 57 chr12 116293513 116293831 -27492624 + AluJo SINE Alu 1 300 -12 1496 146 75 4 chr12 116294340 116294650 -27491805 + AluJb SINE Alu 1 329 0 1878 118 11 7 chr12 116294757 116295065 -27491390 - AluSx SINE Alu 0 309 1 457 245 53 26 chr12 116295475 116295626 -27490829 - MIR SINE MIR -27 235 81 186 341 37 49 chr12 116296623 116296705 -27489750 - L3 LINE CR1 -3 1574 1494 1898 106 0 0 chr12 116296794 116297049 -27489406 - AluSx SINE Alu -16 296 42 1787 93 104 18 chr12 116297138 116297417 -27489038 - AluSq SINE Alu -10 303 1 377 291 19 38 chr12 116297521 116297679 -27488776 + MIR SINE MIR 99 253 -9 1946 147 0 6 chr12 116297685 116298018 -27488437 - AluSx SINE Alu 0 312 1 201 65 0 0 chr12 116298018 116298029 -27488426 + (TTCC)n Simple_repeat Simple_repeat 3 13 -14 1982 109 17 10 chr12 116298029 116298323 -27488132 - AluSx SINE Alu -16 296 1 201 65 0 0 chr12 116298323 116298336 -27488119 + (TTCC)n Simple_repeat Simple_repeat 12 27 0 346 304 13 0 chr12 116300154 116300233 -27486222 - L2 LINE L2 -4 3268 3189 4137 72 45 0 chr12 116300319 116300849 -27485606 - MER41A LTR ERV1 0 554 1 242 259 200 12 chr12 116300850 116300935 -27485520 - L2 LINE L2 -94 3219 3119 385 277 124 71 chr12 116301074 116301153 -27485302 - L2 LINE L2 -996 2318 2245 1924 107 7 4 chr12 116301153 116301458 -27484997 + AluSx SINE Alu 1 306 0 385 277 124 71 chr12 116301458 116301569 -27484886 - L2 LINE L2 -1069 2245 2107 1760 147 13 20 chr12 116301569 116301869 -27484586 + AluJb SINE Alu 3 300 -12 385 277 124 71 chr12 116301869 116301943 -27484512 - L2 LINE L2 -1207 2107 2038 2093 116 0 3 chr12 116301978 116302272 -27484183 + AluSx SINE Alu 1 293 -19 268 291 162 8 chr12 116302327 116302444 -27484011 - L2 LINE L2 -219 3053 2919 2057 134 0 0 chr12 116302581 116302880 -27483575 - AluSx SINE Alu -13 299 1 882 210 45 0 chr12 116303015 116303191 -27483264 + MER5A DNA MER1_type 4 187 -2 324 284 23 11 chr12 116303196 116303284 -27483171 + MLT1K LTR MaLR 74 162 -426 505 163 69 88 chr12 116303328 116303417 -27483038 + MLT1K LTR MaLR 309 398 -190 2143 89 4 0 chr12 116303417 116303744 -27482711 + AluSx SINE Alu 1 328 0 2001 124 20 3 chr12 116303754 116304060 -27482395 + AluSq SINE Alu 1 311 -2 505 163 69 88 chr12 116304060 116304118 -27482337 + MLT1K LTR MaLR 407 465 -123 411 326 181 7 chr12 116304235 116304446 -27482009 + L3 LINE CR1 201 374 -1203 2243 83 0 0 chr12 116304446 116304735 -27481720 - AluSg SINE Alu -21 289 1 2241 104 0 3 chr12 116304736 116305033 -27481422 - AluSx SINE Alu -16 296 1 411 326 181 7 chr12 116305033 116305089 -27481366 + L3 LINE CR1 373 517 -1060 413 300 111 22 chr12 116305527 116305797 -27480658 + L3 LINE CR1 661 954 -623 461 48 0 0 chr12 116305859 116305922 -27480533 - AluSx SINE Alu -10 301 239 1195 123 6 0 chr12 116305923 116306086 -27480369 - AluSx SINE Alu -148 164 1 2210 103 0 23 chr12 116306190 116306490 -27479965 - AluSg SINE Alu -17 293 1 478 284 59 39 chr12 116306490 116306694 -27479761 + L3 LINE CR1 1215 1422 -155 431 286 50 100 chr12 116307552 116307750 -27478705 - L2 LINE L2 0 3313 3107 2102 138 10 0 chr12 116307750 116308055 -27478400 + AluSx SINE Alu 1 308 -4 431 286 50 100 chr12 116308055 116308119 -27478336 - L2 LINE L2 -206 3107 3041 1990 127 0 33 chr12 116308119 116308419 -27478036 - AluJo SINE Alu -20 292 3 431 286 50 100 chr12 116308419 116308536 -27477919 - L2 LINE L2 -272 3041 2952 37 93 0 0 chr12 116310048 116310155 -27476300 + GC_rich Low_complexity Low_complexity 1 107 0 299 189 139 43 chr12 116314452 116314662 -27471793 - L2 LINE L2 -15 3298 3001 2314 91 3 13 chr12 116314900 116315207 -27471248 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 116315678 116315700 -27470755 + AT_rich Low_complexity Low_complexity 1 22 0 2375 78 0 14 chr12 116315951 116316246 -27470209 + AluSx SINE Alu 1 291 -21 2270 96 0 3 chr12 116316609 116316900 -27469555 - AluSx SINE Alu -22 290 1 719 140 70 28 chr12 116316936 116317079 -27469376 - AluJo SINE Alu -22 290 142 1330 187 100 42 chr12 116317086 116317375 -27469080 - AluJo SINE Alu -6 306 1 2216 109 3 3 chr12 116317386 116317689 -27468766 - AluSq SINE Alu -10 303 1 22 0 0 0 chr12 116318713 116318735 -27467720 + AT_rich Low_complexity Low_complexity 1 22 0 846 142 0 8 chr12 116319185 116319319 -27467136 - AluJo SINE Alu -169 133 1 2010 128 7 3 chr12 116319600 116319888 -27466567 - AluSx SINE Alu -23 289 1 2240 89 24 0 chr12 116319899 116320192 -27466263 - AluSp SINE Alu -13 300 1 2210 107 0 7 chr12 116320192 116320490 -27465965 - AluSx SINE Alu -15 297 1 2066 101 20 29 chr12 116320625 116320931 -27465524 - AluSq SINE Alu -10 303 1 2075 108 7 7 chr12 116321265 116321553 -27464902 - AluSx SINE Alu -24 288 1 909 185 13 0 chr12 116321625 116321776 -27464679 + AluJb SINE Alu 137 289 -23 2126 80 45 3 chr12 116322065 116322352 -27464103 - AluSg SINE Alu -11 299 1 255 93 0 0 chr12 116322354 116322397 -27464058 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1910 142 0 4 chr12 116322398 116322679 -27463776 - AluSq SINE Alu -32 281 2 351 0 0 0 chr12 116322811 116322850 -27463605 + (TG)n Simple_repeat Simple_repeat 2 40 0 1140 146 0 0 chr12 116322855 116323026 -27463429 - AluSg/x SINE Alu -6 306 136 2478 81 0 0 chr12 116323030 116323327 -27463128 - AluY SINE Alu -14 297 1 1751 141 43 4 chr12 116323366 116323643 -27462812 + AluSx SINE Alu 5 292 -20 2181 109 7 3 chr12 116323810 116324103 -27462352 - AluSx SINE Alu -18 294 1 1440 214 17 10 chr12 116324150 116324449 -27462006 - AluJo SINE Alu -11 301 1 452 264 144 5 chr12 116324872 116325073 -27461382 - MIR SINE MIR -4 258 30 221 0 35 0 chr12 116325087 116325116 -27461339 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 754 111 0 0 chr12 116325119 116325227 -27461228 - AluSg/x SINE Alu -32 278 171 21 0 0 0 chr12 116325792 116325813 -27460642 + AT_rich Low_complexity Low_complexity 1 21 0 2224 108 10 3 chr12 116326142 116326437 -27460018 + AluSc SINE Alu 1 297 -12 1664 167 15 4 chr12 116326594 116326882 -27459573 - AluJb SINE Alu 0 308 18 2098 113 0 10 chr12 116327422 116327715 -27458740 + AluSc SINE Alu 1 290 -19 647 246 121 9 chr12 116327730 116327954 -27458501 - L1MC4 LINE L1 -85 7957 7709 1715 141 14 21 chr12 116327973 116328256 -27458199 - AluJb SINE Alu -31 281 1 246 220 60 80 chr12 116328433 116328533 -27457922 + MER5B DNA MER1_type 2 99 -79 1629 172 13 23 chr12 116328603 116328906 -27457549 - AluJb SINE Alu -12 300 1 1103 68 0 0 chr12 116328908 116329040 -27457415 - AluSp SINE Alu -181 132 1 180 163 0 0 chr12 116329049 116329092 -27457363 + (TCCG)n Simple_repeat Simple_repeat 2 44 0 * 324 120 0 0 chr12 116329082 116329132 -27457323 + (TCCCC)n Simple_repeat Simple_repeat 3 52 0 1537 152 22 54 chr12 116329169 116329336 -27457119 - AluJo SINE Alu -7 305 151 2095 96 48 14 chr12 116329336 116329628 -27456827 - AluY SINE Alu -9 302 1 1537 152 22 54 chr12 116329628 116329775 -27456680 - AluJo SINE Alu -161 151 1 797 134 0 8 chr12 116330033 116330152 -27456303 - FLAM_C SINE Alu -15 118 1 550 323 111 23 chr12 116330363 116330803 -27455652 + L2 LINE L2 2376 2854 -460 1033 135 78 5 chr12 116331096 116331289 -27455166 - L1MB3 LINE L1 -4 6179 5973 1897 151 3 7 chr12 116331542 116331881 -27454574 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 116332207 116332228 -27454227 + AT_rich Low_complexity Low_complexity 1 21 0 1791 132 0 51 chr12 116332229 116332376 -27454079 - AluSx SINE Alu -31 281 128 267 79 0 0 chr12 116332376 116332414 -27454041 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2172 81 3 18 chr12 116332414 116332698 -27453757 - AluSc SINE Alu -29 280 1 1791 132 0 51 chr12 116332698 116332845 -27453610 - AluSx SINE Alu -182 130 1 2694 190 135 33 chr12 116332868 116333828 -27452627 - L1MB7 LINE L1 -75 6109 5057 359 167 0 33 chr12 116333851 116333911 -27452544 + AluJ/FLAM SINE Alu 3 60 -242 2272 109 0 13 chr12 116333916 116334218 -27452237 - AluSx SINE Alu -14 298 1 779 196 11 34 chr12 116334236 116334415 -27452040 + FRAM SINE Alu 1 169 -7 1507 193 103 53 chr12 116334416 116334940 -27451515 - L1MB7 LINE L1 -1170 4976 4427 2326 55 0 28 chr12 116335011 116335323 -27451132 - AluY SINE Alu 0 304 1 21 0 0 0 chr12 116335328 116335349 -27451106 + AT_rich Low_complexity Low_complexity 1 21 0 2010 173 52 21 chr12 116335349 116335721 -27450734 - L1PA16 LINE L1 -21 6145 5786 1487 158 12 106 chr12 116335721 116336043 -27450412 - AluSp SINE Alu -21 292 1 2010 173 52 21 chr12 116336043 116336207 -27450248 - L1PA16 LINE L1 -380 5786 5629 1728 190 3 10 chr12 116336207 116336517 -27449938 - AluJb SINE Alu -3 309 2 2010 173 52 21 chr12 116336517 116336995 -27449460 - L1PA16 LINE L1 -537 5629 4986 1551 217 75 5 chr12 116336995 116337368 -27449087 - L1MB7 LINE L1 -1764 4382 3984 2592 77 0 0 chr12 116338130 116338442 -27448013 - AluSx SINE Alu 0 312 1 1997 146 0 19 chr12 116338605 116338913 -27447542 + AluJb SINE Alu 1 302 -10 1182 199 107 34 chr12 116339119 116339410 -27447045 - AluJo SINE Alu 0 312 1 560 217 87 0 chr12 116340234 116340312 -27446143 - FLAM_C SINE Alu -187 125 32 2144 85 0 27 chr12 116340312 116340607 -27445848 + AluSg SINE Alu 21 307 -3 560 217 87 0 chr12 116340607 116340643 -27445812 - FLAM_C SINE Alu -280 32 1 889 152 0 0 chr12 116340740 116340865 -27445590 + FLAM_C SINE Alu 1 125 -18 1521 146 41 51 chr12 116340888 116341182 -27445273 + AluJb SINE Alu 1 291 -21 321 231 207 16 chr12 116341226 116341347 -27445108 - MER5A DNA MER1_type 0 189 46 2055 157 0 0 chr12 116341552 116341864 -27444591 + AluSx SINE Alu 1 312 0 2193 100 7 10 chr12 116342290 116342599 -27443856 - AluY SINE Alu -3 308 1 2148 110 7 23 chr12 116342690 116342999 -27443456 - AluSx SINE Alu -8 304 1 2308 110 7 0 chr12 116343032 116343342 -27443113 + AluSp SINE Alu 1 312 -1 357 229 86 63 chr12 116343564 116343739 -27442716 + MIR SINE MIR 84 262 0 2518 70 0 0 chr12 116343851 116344149 -27442306 - AluY SINE Alu -12 299 2 233 301 57 15 chr12 116344515 116344621 -27441834 - MIR SINE MIR -62 146 38 1994 112 7 0 chr12 116344643 116344912 -27441543 + AluSx SINE Alu 1 271 -41 1254 115 6 0 chr12 116344918 116345092 -27441363 + AluSq SINE Alu 130 304 -9 295 244 98 32 chr12 116345530 116345653 -27440802 - L2 LINE L2 -1 3312 3182 1758 99 121 18 chr12 116346388 116346661 -27439794 - AluSx SINE Alu 0 302 2 2038 129 18 0 chr12 116347472 116347758 -27438697 - AluSx SINE Alu -21 291 1 1049 179 0 37 chr12 116348040 116348230 -27438225 + AluJb SINE Alu 130 312 0 224 111 49 49 chr12 116348595 116348676 -27437779 + (TA)n Simple_repeat Simple_repeat 1 81 0 891 207 76 10 chr12 116348834 116349032 -27437423 + MER46A DNA MER2_type 26 236 0 2033 144 7 3 chr12 116349931 116350237 -27436218 + AluSx SINE Alu 1 307 -5 433 191 0 0 chr12 116350449 116350533 -27435922 - AluSx SINE Alu -6 305 222 985 168 0 12 chr12 116350533 116350694 -27435761 - AluSx SINE Alu -128 184 26 1074 32 0 0 chr12 116350976 116351100 -27435355 - AluY SINE Alu -13 298 175 619 169 154 15 chr12 116351342 116351472 -27434983 + AluJb SINE Alu 146 293 -19 2058 120 0 0 chr12 116352194 116352469 -27433986 - AluSx SINE Alu -37 275 1 1684 150 66 0 chr12 116352512 116352785 -27433670 + AluJb SINE Alu 1 291 -21 2067 113 0 0 chr12 116353411 116353686 -27432769 - AluSg SINE Alu -17 293 19 477 181 0 0 chr12 116353701 116353784 -27432671 + AluJ/FLAM SINE Alu 2 84 -228 1756 158 56 0 chr12 116353813 116354097 -27432358 - AluSx SINE Alu -12 300 1 25 51 0 0 chr12 116354097 116354136 -27432319 + AT_rich Low_complexity Low_complexity 1 39 0 2119 110 24 3 chr12 116354336 116354627 -27431828 + AluSx SINE Alu 1 297 -15 1587 183 7 21 chr12 116354696 116354985 -27431470 + AluJb SINE Alu 12 296 -16 309 301 53 0 chr12 116355793 116355926 -27430529 + L1MC4 LINE L1 7886 8025 -17 1998 125 10 0 chr12 116357275 116357572 -27428883 + AluSx SINE Alu 3 302 -10 1438 192 14 14 chr12 116357571 116357852 -27428603 - AluJb SINE Alu -31 281 1 * 1523 157 67 73 chr12 116358001 116358345 -27428110 + MER2 DNA MER2_type 2 343 -1 2182 98 0 16 chr12 116358390 116358706 -27427749 - AluSp SINE Alu -2 311 1 269 169 115 41 chr12 116358856 116359025 -27427430 - LTR37A LTR ERV1 -5 463 242 362 227 52 0 chr12 116359070 116359167 -27427288 - LTR37B LTR ERV1 -366 102 1 2002 105 20 14 chr12 116359946 116360240 -27426215 + AluSx SINE Alu 1 296 -16 1825 117 11 4 chr12 116360346 116360620 -27425835 - AluSg1 SINE Alu -33 276 1 700 272 276 21 chr12 116363153 116363571 -27422884 + L2 LINE L2 1249 1779 -1535 2251 77 7 3 chr12 116363571 116363870 -27422585 - AluSx SINE Alu -10 302 3 242 139 23 0 chr12 116363881 116363924 -27422531 + L1M4 LINE L1 3623 3666 -2480 202 206 0 0 chr12 116363930 116363964 -27422491 + (TGG)n Simple_repeat Simple_repeat 3 36 0 709 200 100 0 chr12 116364368 116364508 -27421947 + FRAM SINE Alu 2 155 -11 351 255 170 0 chr12 116366842 116366948 -27419507 + L1M4 LINE L1 4095 4218 -1928 433 258 219 4 chr12 116366952 116367185 -27419270 + L2 LINE L2 1916 2198 -1116 340 263 160 23 chr12 116367185 116367360 -27419095 - MER3 DNA MER1_type -10 199 1 1343 128 57 4 chr12 116367450 116367677 -27418778 - AluSq SINE Alu -19 294 56 406 257 193 67 chr12 116367715 116368178 -27418277 + L2 LINE L2 2732 3257 -56 2155 102 3 7 chr12 116369240 116369545 -27416910 + AluSp SINE Alu 2 305 -8 2034 100 21 0 chr12 116370576 116370865 -27415590 + AluSx SINE Alu 1 295 -17 1452 133 87 14 chr12 116371738 116372024 -27414431 - AluSx SINE Alu -5 307 1 189 293 172 0 chr12 116372871 116372929 -27413526 - MIR SINE MIR -59 149 82 228 111 0 0 chr12 116376002 116376038 -27410417 + (CACCC)n Simple_repeat Simple_repeat 1 36 0 192 77 0 0 chr12 116376546 116376572 -27409883 + (TG)n Simple_repeat Simple_repeat 2 27 0 630 167 40 40 chr12 116377569 116377695 -27408760 + FLAM_C SINE Alu 1 126 -7 1574 65 134 40 chr12 116380713 116380835 -27405620 + AluY SINE Alu 6 115 -196 2467 68 0 0 chr12 116380835 116381145 -27405310 + AluY SINE Alu 2 311 0 1574 65 134 40 chr12 116381145 116381269 -27405186 + AluY SINE Alu 115 275 -36 257 274 27 0 chr12 116381397 116381470 -27404985 + L1MC3 LINE L1 4091 4165 -1981 1286 220 4 0 chr12 116382591 116382850 -27403605 - AluJo SINE Alu -52 260 1 338 262 59 51 chr12 116382909 116383165 -27403290 + L1MC3 LINE L1 5680 5937 -1871 3673 160 154 42 chr12 116383215 116383411 -27403044 + L1MC3 LINE L1 6433 6606 -1179 1443 171 63 3 chr12 116383411 116383697 -27402758 + AluJb SINE Alu 1 303 -9 3673 160 154 42 chr12 116383697 116384444 -27402011 + L1MC3 LINE L1 6606 7481 -304 2100 111 0 16 chr12 116384475 116384782 -27401673 + AluSx SINE Alu 1 302 -10 2151 75 6 62 chr12 116384782 116385104 -27401351 + AluY SINE Alu 1 304 -7 923 196 22 31 chr12 116385110 116385161 -27401294 + AluJo SINE Alu 85 135 -177 1777 142 0 28 chr12 116385161 116385478 -27400977 + AluSg SINE Alu 1 308 -2 923 196 22 31 chr12 116385478 116385655 -27400800 + AluJo SINE Alu 135 311 -1 2123 97 3 0 chr12 116385708 116385996 -27400459 + AluSp SINE Alu 1 289 -24 481 202 11 0 chr12 116386165 116386254 -27400201 + AluS SINE Alu 2 91 -222 * 615 183 10 0 chr12 116386249 116386353 -27400102 + AluJb SINE Alu 162 266 -46 23 0 0 0 chr12 116386374 116386397 -27400058 + AT_rich Low_complexity Low_complexity 1 23 0 467 114 57 0 chr12 116386397 116386467 -27399988 + FLAM_A SINE Alu 2 75 -57 1406 184 6 52 chr12 116386492 116386819 -27399636 + AluJb SINE Alu 1 312 0 259 270 146 91 chr12 116386855 116387086 -27399369 + L1MEc LINE L1 1420 1670 -4726 1981 134 16 7 chr12 116387086 116387393 -27399062 + AluSx SINE Alu 1 310 -2 259 270 146 91 chr12 116387393 116387435 -27399020 + L1MEc LINE L1 1670 1708 -4688 2234 85 3 20 chr12 116387793 116388098 -27398357 - AluY SINE Alu -11 300 1 823 159 0 8 chr12 116388218 116388344 -27398111 + FLAM_C SINE Alu 1 125 -8 1112 109 0 0 chr12 116388352 116388499 -27397956 + AluSg SINE Alu 1 147 -163 1182 147 30 0 chr12 116388546 116388744 -27397711 + AluJb SINE Alu 90 293 -19 22 0 0 0 chr12 116388831 116388853 -27397602 + AT_rich Low_complexity Low_complexity 1 22 0 1300 129 0 15 chr12 116388919 116389120 -27397335 - AluSx SINE Alu -69 243 46 2314 91 0 0 chr12 116389121 116389418 -27397037 - AluSg SINE Alu -13 297 1 2197 107 3 0 chr12 116389422 116389731 -27396724 - 7SLRNA srpRNA srpRNA -10 310 1 1059 166 0 0 chr12 116389748 116389923 -27396532 + AluJb SINE Alu 132 306 -6 1969 122 21 0 chr12 116389933 116390221 -27396234 + AluSx SINE Alu 1 294 -18 1791 134 7 7 chr12 116390506 116390782 -27395673 + AluSx SINE Alu 13 288 -24 1461 165 92 4 chr12 116390858 116391130 -27395325 - AluJo SINE Alu -16 296 1 647 218 95 17 chr12 116391187 116391345 -27395110 - MIR SINE MIR -49 213 38 1681 160 51 7 chr12 116391345 116391638 -27394817 + AluJo SINE Alu 1 306 -6 647 218 95 17 chr12 116391638 116391658 -27394797 - MIR SINE MIR -224 38 21 1998 110 0 36 chr12 116391701 116392028 -27394427 - AluSc SINE Alu 0 309 5 334 267 275 0 chr12 116392031 116392162 -27394293 + L2 LINE L2 3106 3272 0 267 290 57 33 chr12 116392270 116392416 -27394039 - MIR SINE MIR -58 150 45 1209 165 89 122 chr12 116392438 116392619 -27393836 + MER63 DNA MER1_type 680 865 -196 2373 65 0 0 chr12 116392619 116392913 -27393542 + AluSg SINE Alu 2 295 -15 1209 165 89 122 chr12 116392913 116392934 -27393521 + MER63 DNA MER1_type 865 885 -176 2102 106 3 0 chr12 116392934 116393227 -27393228 + AluSp SINE Alu 7 300 -13 834 176 0 0 chr12 116393237 116393368 -27393087 + FLAM_C SINE Alu 2 132 -1 1209 165 89 122 chr12 116393368 116393409 -27393046 + MER63 DNA MER1_type 894 935 -126 1923 119 14 3 chr12 116393409 116393703 -27392752 - AluSx SINE Alu -15 297 1 1209 165 89 122 chr12 116393703 116393841 -27392614 + MER63 DNA MER1_type 935 1061 0 2130 121 0 0 chr12 116394940 116395237 -27391218 + AluSx SINE Alu 1 297 -15 2099 119 7 3 chr12 116395254 116395556 -27390899 + AluSp SINE Alu 1 303 -10 254 220 0 34 chr12 116395612 116395671 -27390784 - L2 LINE L2 0 3313 3257 1973 145 0 0 chr12 116395793 116396097 -27390358 + AluSx SINE Alu 1 304 -8 2327 50 0 27 chr12 116396105 116396402 -27390053 + AluY SINE Alu 6 294 -17 328 213 84 84 chr12 116396777 116396898 -27389557 + HAL1b LINE L1 1015 1135 -213 2159 113 0 0 chr12 116396898 116397200 -27389255 - AluSx SINE Alu -10 302 1 328 213 84 84 chr12 116397200 116397359 -27389096 + HAL1b LINE L1 1135 1298 -50 1344 154 24 139 chr12 116397359 116397478 -27388977 + AluJo SINE Alu 2 133 -169 2127 104 3 3 chr12 116397478 116397777 -27388678 - AluSq SINE Alu -14 299 1 1344 154 24 139 chr12 116397777 116397988 -27388467 + AluJo SINE Alu 133 294 -8 328 213 84 84 chr12 116397988 116398040 -27388415 + HAL1b LINE L1 1297 1348 0 2081 92 25 0 chr12 116398097 116398380 -27388075 + AluSg SINE Alu 3 292 -18 2295 77 0 3 chr12 116398383 116398680 -27387775 + AluY SINE Alu 1 296 -15 2368 74 0 0 chr12 116398680 116398979 -27387476 + AluY SINE Alu 1 299 -12 1211 201 18 0 chr12 116399400 116399619 -27386836 + MER58A DNA MER1_type 1 223 -1 212 182 23 0 chr12 116399632 116399676 -27386779 - L2 LINE L2 -1 3312 3268 1805 152 0 7 chr12 116399678 116399975 -27386480 - AluY SINE Alu -16 295 1 604 90 0 0 chr12 116400168 116400246 -27386209 + AluJo SINE Alu 60 137 -175 1961 114 14 0 chr12 116400247 116400536 -27385919 + AluSx SINE Alu 7 299 -13 1977 85 53 0 chr12 116400593 116400874 -27385581 + AluSp SINE Alu 1 296 -17 2101 112 0 3 chr12 116400905 116401208 -27385247 - AluSc SINE Alu -7 302 1 1953 151 0 0 chr12 116401208 116401512 -27384943 - AluSx SINE Alu -8 304 1 2367 72 0 0 chr12 116401858 116402151 -27384304 + AluSx SINE Alu 1 293 -19 264 111 0 0 chr12 116402716 116402752 -27383703 + Charlie4 DNA MER1_type 1 36 -1925 369 0 0 0 chr12 116402771 116402812 -27383643 + (TG)n Simple_repeat Simple_repeat 2 42 0 1999 122 0 7 chr12 116403594 116403882 -27382573 + AluSx SINE Alu 1 286 -26 2335 55 0 29 chr12 116403890 116404197 -27382258 + AluY SINE Alu 1 298 -13 21 0 0 0 chr12 116404224 116404245 -27382210 + AT_rich Low_complexity Low_complexity 1 21 0 1386 150 47 72 chr12 116404668 116405028 -27381427 - L1MB7 LINE L1 -20 6164 5814 2218 69 6 82 chr12 116405077 116405217 -27381238 + AluSp SINE Alu 1 105 -208 2460 91 0 0 chr12 116405217 116405524 -27380931 + AluSq SINE Alu 1 307 -6 2218 69 6 82 chr12 116405524 116405702 -27380753 + AluSp SINE Alu 105 295 -18 2320 82 0 13 chr12 116405703 116406006 -27380449 + AluY SINE Alu 1 299 -12 1258 153 30 0 chr12 116406267 116406469 -27379986 - AluJb SINE Alu -9 303 96 798 172 8 15 chr12 116406477 116406495 -27379960 - FLAM_C SINE Alu -169 133 116 2316 110 3 0 chr12 116406495 116406804 -27379651 - AluSx SINE Alu -1 311 2 798 172 8 15 chr12 116406804 116406919 -27379536 - FLAM_C SINE Alu -186 116 1 690 67 0 11 chr12 116407063 116407153 -27379302 + AluJb SINE Alu 210 298 -14 715 119 30 0 chr12 116407169 116407270 -27379185 - AluSq/x SINE Alu -207 105 2 314 250 21 62 chr12 116407271 116407367 -27379088 - L1MC4 LINE L1 -1337 6705 6614 234 237 0 0 chr12 116407369 116407445 -27379010 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 362 200 0 100 chr12 116407445 116407545 -27378910 + L1MC4 LINE L1 6614 6703 -1339 318 269 0 43 chr12 116407550 116407643 -27378812 - L1MC4 LINE L1 -1340 6702 6614 2241 35 24 38 chr12 116407644 116407934 -27378521 - AluY SINE Alu -25 286 1 22 0 0 0 chr12 116407936 116407958 -27378497 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr12 116408095 116408121 -27378334 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2207 113 7 0 chr12 116408185 116408477 -27377978 - AluSx SINE Alu -18 294 1 2710 51 0 0 chr12 116408607 116408918 -27377537 - AluY SINE Alu 0 311 1 919 132 0 22 chr12 116408928 116409064 -27377391 - FLAM_C SINE Alu 0 133 1 375 23 0 0 chr12 116409121 116409165 -27377290 + (CA)n Simple_repeat Simple_repeat 2 45 0 256 225 136 62 chr12 116410964 116411109 -27375346 + L1ME LINE L1 5732 5894 -227 2100 112 7 3 chr12 116411109 116411396 -27375059 + AluSg SINE Alu 1 288 -22 256 225 136 62 chr12 116411396 116411426 -27375029 + L1ME LINE L1 5894 5920 -201 2222 100 14 0 chr12 116411610 116411901 -27374554 + AluSg SINE Alu 1 295 -15 2317 110 0 0 chr12 116412122 116412422 -27374033 + AluSc SINE Alu 1 300 -9 2104 125 0 0 chr12 116412455 116412735 -27373720 + AluSx SINE Alu 25 304 -8 373 249 43 120 chr12 116413180 116413251 -27373204 - MIR SINE MIR -39 223 148 2078 99 0 119 chr12 116413251 116413390 -27373065 + AluSx SINE Alu 1 155 -147 2159 114 17 0 chr12 116413390 116413688 -27372767 + AluSq SINE Alu 3 305 -8 2373 100 0 3 chr12 116413688 116413999 -27372456 + AluSg SINE Alu 1 310 0 2078 99 0 119 chr12 116413999 116414201 -27372254 + AluSx SINE Alu 153 302 0 2297 112 0 3 chr12 116414201 116414514 -27371941 + AluSx SINE Alu 1 312 0 373 249 43 120 chr12 116414514 116414650 -27371805 - MIR SINE MIR -112 150 31 2506 80 3 3 chr12 116415360 116415671 -27370784 + AluSp SINE Alu 1 311 -2 281 143 157 0 chr12 116415672 116415742 -27370713 - L1MB8 LINE L1 -9 6169 6089 2023 148 57 73 chr12 116415755 116415994 -27370461 - L1MB4 LINE L1 -24 6156 5915 2101 130 0 17 chr12 116415994 116416294 -27370161 + AluSx SINE Alu 1 295 -17 2023 148 57 73 chr12 116416294 116416408 -27370047 - L1MB4 LINE L1 -265 5915 5801 2239 107 7 0 chr12 116416408 116416698 -27369757 - AluSx SINE Alu -20 292 1 2023 148 57 73 chr12 116416698 116416848 -27369607 - L1MB4 LINE L1 -379 5801 5660 187 192 144 115 chr12 116417376 116417480 -27368975 + MIR3 SINE MIR 99 205 -3 434 169 0 0 chr12 116417581 116417646 -27368809 + AluS SINE Alu 2 66 -247 3209 100 19 4 chr12 116417652 116418132 -27368323 - LTR15 LTR ERV1 -6 487 1 1298 148 43 5 chr12 116418133 116418363 -27368092 + AluJb SINE Alu 64 301 0 1009 168 6 0 chr12 116418464 116418631 -27367824 + FRAM SINE Alu 1 164 -12 1836 153 7 20 chr12 116418633 116418961 -27367494 + AluJo SINE Alu 5 328 0 2425 105 0 0 chr12 116419095 116419400 -27367055 - AluSg SINE Alu -5 305 1 344 214 152 0 chr12 116419441 116419553 -27366902 + L2 LINE L2 1653 1781 -1533 986 164 19 0 chr12 116419608 116419767 -27366688 - AluSg/x SINE Alu -14 298 137 662 174 70 76 chr12 116419789 116419961 -27366494 - MER20 DNA MER1_type -47 172 2 407 199 212 60 chr12 116419962 116419990 -27366465 + L2 LINE L2 1763 1785 -1529 2364 80 3 13 chr12 116419990 116420290 -27366165 + AluSg SINE Alu 1 297 -13 2012 132 3 7 chr12 116420295 116420590 -27365865 + AluSx SINE Alu 1 294 -18 407 199 212 60 chr12 116420590 116420706 -27365749 + L2 LINE L2 1788 1936 -1378 1544 78 0 0 chr12 116420709 116420901 -27365554 + AluY SINE Alu 120 311 0 3439 64 14 36 chr12 116420934 116421206 -27365249 + LTR15 LTR ERV1 1 259 -234 2804 7 3 0 chr12 116421206 116421506 -27364949 + AluYa5 SINE Alu 1 301 -10 3439 64 14 36 chr12 116421506 116421731 -27364724 + LTR15 LTR ERV1 259 487 -6 462 281 72 36 chr12 116421777 116422026 -27364429 - MER34 LTR ERV1 -29 513 256 1994 130 46 0 chr12 116422239 116422523 -27363932 - AluSx SINE Alu -15 297 1 1943 151 23 3 chr12 116422584 116422888 -27363567 - AluJo SINE Alu -2 310 1 207 321 0 0 chr12 116422920 116422973 -27363482 - MIR SINE MIR -12 250 198 2503 70 0 0 chr12 116423009 116423310 -27363145 - AluY SINE Alu -10 301 1 286 237 46 46 chr12 116423311 116423442 -27363013 - MER97c DNA MER1_type? -28 1062 932 1117 93 0 7 chr12 116423443 116423583 -27362872 + AluSq/x SINE Alu 1 139 -174 2278 109 0 0 chr12 116423587 116423881 -27362574 + AluSg1 SINE Alu 1 294 -15 1993 122 0 38 chr12 116423884 116424007 -27362448 + AluSx SINE Alu 21 147 -165 2304 94 13 0 chr12 116424007 116424306 -27362149 + AluSp SINE Alu 1 303 -10 1993 122 0 38 chr12 116424306 116424470 -27361985 + AluSx SINE Alu 147 297 -15 189 196 0 0 chr12 116424528 116424574 -27361881 + (TA)n Simple_repeat Simple_repeat 2 47 0 1384 44 0 0 chr12 116424575 116424734 -27361721 + AluY SINE Alu 136 294 -17 1233 184 9 9 chr12 116424773 116424990 -27361465 - AluJo SINE Alu -95 217 1 946 165 41 31 chr12 116425000 116425161 -27361294 - L1MC2 LINE L1 -11 6333 6168 2250 102 0 16 chr12 116425161 116425465 -27360990 - AluSg SINE Alu -11 299 1 946 165 41 31 chr12 116425465 116425497 -27360958 - L1MC2 LINE L1 -176 6168 6138 1931 120 85 3 chr12 116425503 116425786 -27360669 - AluSx SINE Alu -6 306 1 921 141 51 6 chr12 116425786 116425963 -27360492 - L1MC3 LINE L1 -193 7592 7408 472 250 113 36 chr12 116426130 116426514 -27359941 - L1ME LINE L1 -644 5518 5105 1787 86 115 57 chr12 116426514 116426793 -27359662 - AluY SINE Alu -16 295 1 472 250 113 36 chr12 116426793 116426836 -27359619 - L1ME LINE L1 -1057 5105 5067 1326 166 0 13 chr12 116426838 116427067 -27359388 + AluJo SINE Alu 81 306 -6 1785 109 87 0 chr12 116427262 116427527 -27358928 - AluSx SINE Alu -19 293 6 447 293 95 0 chr12 116427918 116428065 -27358390 + MIR SINE MIR 102 262 0 1137 105 0 0 chr12 116428676 116428829 -27357626 + AluJb SINE Alu 158 310 -2 216 296 14 14 chr12 116428831 116428902 -27357553 + MER5A DNA MER1_type 68 138 -51 1765 127 3 82 chr12 116428908 116429223 -27357232 - AluJb SINE Alu -22 290 1 951 128 0 0 chr12 116429482 116429615 -27356840 - FLAM_C SINE Alu -10 133 1 1609 129 58 4 chr12 116429861 116430101 -27356354 + AluJb SINE Alu 1 253 -59 2414 88 0 0 chr12 116430414 116430708 -27355747 + AluSc SINE Alu 1 294 -15 2317 106 0 0 chr12 116430902 116431195 -27355260 - AluSx SINE Alu -15 297 5 221 274 0 0 chr12 116431219 116431270 -27355185 + L3b LINE CR1 1532 1582 -1 1052 184 0 6 chr12 116431949 116432128 -27354327 + AluJb SINE Alu 122 299 -13 2338 104 3 0 chr12 116432398 116432705 -27353750 - AluSg SINE Alu -2 308 1 2172 127 3 13 chr12 116432897 116433213 -27353242 - AluSq SINE Alu 0 313 1 2237 115 6 3 chr12 116433332 116433644 -27352811 + AluSq SINE Alu 1 313 0 1079 160 5 32 chr12 116433867 116434055 -27352400 - AluJ SINE Alu 0 312 130 2290 119 3 10 chr12 116434060 116434372 -27352083 - AluSq SINE Alu -3 310 1 300 194 0 15 chr12 116434373 116434440 -27352015 - L1ME1 LINE L1 -56 6110 6045 735 193 15 7 chr12 116434442 116434577 -27351878 + AluJo SINE Alu 5 140 -172 2213 203 31 5 chr12 116434577 116435327 -27351128 - L1M3 LINE L1 -608 5575 4807 970 104 8 0 chr12 116435337 116435462 -27350993 - AluJ SINE Alu -186 126 1 2507 91 3 0 chr12 116435469 116435776 -27350679 - AluSp SINE Alu -5 308 1 970 228 122 32 chr12 116435778 116436156 -27350299 - L1ME1 LINE L1 -341 5825 5414 2291 103 3 10 chr12 116436171 116436481 -27349974 + AluSg SINE Alu 1 308 -2 2451 85 3 0 chr12 116436785 116437090 -27349365 - AluSq SINE Alu -7 306 1 2314 107 0 22 chr12 116437094 116437413 -27349042 - AluSx SINE Alu 0 312 1 228 189 0 19 chr12 116437494 116437547 -27348908 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2207 120 0 0 chr12 116437601 116437892 -27348563 - AluSx SINE Alu -21 291 1 714 273 124 45 chr12 116437892 116438401 -27348054 - HAL1 LINE L1 -1947 560 12 592 139 79 0 chr12 116438477 116438578 -27347877 + L1MC1 LINE L1 6217 6325 -8 2222 128 0 7 chr12 116438578 116438883 -27347572 + AluSx SINE Alu 1 303 -9 2164 108 6 38 chr12 116438892 116439208 -27347247 + AluSx SINE Alu 1 306 -6 562 231 85 8 chr12 116439235 116439365 -27347090 + MIR SINE MIR 22 161 -101 1232 157 19 32 chr12 116439443 116439659 -27346796 + AluJo SINE Alu 86 298 -14 2397 93 0 0 chr12 116439664 116439966 -27346489 + AluY SINE Alu 3 304 -7 349 211 144 29 chr12 116440236 116440340 -27346115 - L2 LINE L2 -5 3267 3152 2187 129 3 0 chr12 116440561 116440871 -27345584 - AluSx SINE Alu -1 311 1 2328 159 80 27 chr12 116440888 116441010 -27345445 + LTR24 LTR ERV1 5 119 -348 2031 107 15 0 chr12 116441010 116441271 -27345184 + AluSq SINE Alu 1 265 -48 2166 113 7 0 chr12 116441271 116441564 -27344891 + AluSg SINE Alu 8 302 -8 2328 159 80 27 chr12 116441564 116441880 -27344575 + LTR24 LTR ERV1 118 467 0 499 224 9 9 chr12 116442017 116442133 -27344322 + LTR37B LTR ERV1 3 118 -350 647 173 27 119 chr12 116442133 116442318 -27344137 - MER58B DNA MER1_type 0 341 174 780 108 77 39 chr12 116442321 116442451 -27344004 + AluJo SINE Alu 2 136 -176 1870 120 70 33 chr12 116442578 116442879 -27343576 - AluSx SINE Alu 0 312 1 524 195 145 59 chr12 116442901 116443094 -27343361 + LTR37B LTR ERV1 198 414 -54 1974 165 3 0 chr12 116443094 116443403 -27343052 - AluJb SINE Alu -2 310 1 524 195 145 59 chr12 116443403 116443430 -27343025 + LTR37B LTR ERV1 414 437 -31 2309 118 0 0 chr12 116443431 116443736 -27342719 - AluSq SINE Alu -8 305 1 2192 106 7 17 chr12 116443849 116444150 -27342305 + AluSx SINE Alu 1 298 -14 2081 138 8 90 chr12 116444152 116444518 -27341937 - L1MB3 LINE L1 -4 6179 5784 2134 132 30 0 chr12 116444518 116444821 -27341634 - AluSx SINE Alu 0 312 1 1530 217 20 20 chr12 116444826 116445126 -27341329 - AluJo SINE Alu -8 304 5 2081 138 8 90 chr12 116445126 116445158 -27341297 - L1MB3 LINE L1 -403 5780 5747 2385 79 3 0 chr12 116445158 116445450 -27341005 + AluSc SINE Alu 1 293 -16 2081 138 8 90 chr12 116445450 116445474 -27340981 - L1MB3 LINE L1 -436 5747 5723 2439 84 0 0 chr12 116445474 116445770 -27340685 + AluY SINE Alu 1 296 -15 2081 138 8 90 chr12 116445770 116445897 -27340558 - L1MB3 LINE L1 -460 5723 5672 1876 143 11 4 chr12 116445926 116446206 -27340249 - AluSx SINE Alu -30 282 1 1213 112 16 0 chr12 116446207 116446395 -27340060 - L1MB3 LINE L1 -510 5673 5483 2327 91 13 0 chr12 116446397 116446704 -27339751 - AluSp SINE Alu -2 311 1 1782 179 0 3 chr12 116446722 116447023 -27339432 - AluJo SINE Alu 0 312 13 1103 218 30 7 chr12 116447028 116447299 -27339156 - L1MB3 LINE L1 -881 5265 4989 1850 129 108 0 chr12 116447303 116447582 -27338873 - AluJb SINE Alu -3 309 1 434 276 148 53 chr12 116447592 116447769 -27338686 - L1M4 LINE L1 -991 5155 4947 1994 164 7 0 chr12 116447769 116448062 -27338393 - AluSx SINE Alu -17 295 1 434 276 148 53 chr12 116448062 116448127 -27338328 - L1M4 LINE L1 -1199 4947 4890 1570 158 3 84 chr12 116448127 116448284 -27338171 + AluJb SINE Alu 1 122 -190 1584 90 5 0 chr12 116448284 116448485 -27337970 + AluY SINE Alu 93 294 -17 1570 158 3 84 chr12 116448485 116448638 -27337817 + AluJb SINE Alu 122 286 -26 2319 73 52 0 chr12 116448738 116449026 -27337429 + AluSp SINE Alu 1 303 -10 408 40 0 0 chr12 116449026 116449076 -27337379 + (TA)n Simple_repeat Simple_repeat 2 51 0 946 129 0 29 chr12 116449167 116449306 -27337149 + FRAM SINE Alu 21 155 -21 1957 124 17 17 chr12 116449397 116449724 -27336731 - AluSx SINE Alu 0 312 1 279 192 0 0 chr12 116449751 116449803 -27336652 + Alu SINE Alu 1 52 -250 1541 109 0 10 chr12 116449803 116450005 -27336450 + AluSg/x SINE Alu 96 295 -15 1914 135 3 38 chr12 116450019 116450338 -27336117 + AluJb SINE Alu 1 308 -4 1405 278 72 41 chr12 116451566 116451794 -27334661 - MLT1K LTR MaLR 0 588 368 2131 137 3 13 chr12 116451794 116452109 -27334346 + AluSx SINE Alu 1 312 0 1405 278 72 41 chr12 116452109 116452438 -27334017 - MLT1K LTR MaLR -220 368 14 466 241 107 64 chr12 116452654 116452725 -27333730 - L2 LINE L2 -3 3310 3243 1678 179 13 39 chr12 116452725 116453033 -27333422 - AluJb SINE Alu -12 300 1 466 241 107 64 chr12 116453033 116453148 -27333307 - L2 LINE L2 -70 3243 3116 2198 103 3 17 chr12 116453185 116453485 -27332970 + AluSc SINE Alu 1 296 -13 2224 126 0 7 chr12 116453506 116453807 -27332648 + AluSx SINE Alu 1 299 -13 216 214 0 0 chr12 116453859 116453901 -27332554 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2311 114 3 0 chr12 116453993 116454292 -27332163 - AluSx SINE Alu -11 301 2 1757 121 0 52 chr12 116454305 116454348 -27332107 - L1MB7 LINE L1 -16 6168 6124 1862 164 3 20 chr12 116454348 116454505 -27331950 - AluJb SINE Alu -24 288 137 2046 92 0 15 chr12 116454505 116454776 -27331679 - AluSc SINE Alu -21 288 22 1862 164 3 20 chr12 116454776 116454911 -27331544 - AluJb SINE Alu -175 137 1 1757 121 0 52 chr12 116454911 116455172 -27331283 - L1MB7 LINE L1 -60 6124 5880 556 223 230 0 chr12 116455182 116455321 -27331134 - FAM SINE Alu -4 171 1 2335 95 0 3 chr12 116455335 116455629 -27330826 - AluSx SINE Alu -19 293 1 2032 140 0 7 chr12 116455884 116456194 -27330261 - AluSx SINE Alu -13 299 1 186 277 0 0 chr12 116456278 116456325 -27330130 + L2 LINE L2 3255 3301 -12 1284 111 22 49 chr12 116456349 116456574 -27329881 + MER20 DNA MER1_type 1 219 0 2066 104 35 14 chr12 116458068 116458357 -27328098 - AluSx SINE Alu -17 295 1 272 328 95 9 chr12 116458366 116458482 -27327973 - L2 LINE L2 -1 3312 3187 192 40 0 0 chr12 116458484 116458509 -27327946 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr12 116459241 116459262 -27327193 + GC_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 116459471 116459510 -27326945 + GC_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr12 116459587 116459607 -27326848 + (CGG)n Simple_repeat Simple_repeat 1 20 0 284 210 135 4 chr12 116459851 116459977 -27326478 - MIR SINE MIR -20 242 84 2106 91 0 25 chr12 116461117 116461402 -27325053 - AluSg SINE Alu -19 291 14 2262 113 0 0 chr12 116461492 116461794 -27324661 + AluSg SINE Alu 1 302 -8 2340 93 0 3 chr12 116461902 116462203 -27324252 + AluSx SINE Alu 1 300 -12 2281 89 0 43 chr12 116462486 116462811 -27323644 - AluSq SINE Alu -2 311 1 2055 130 0 10 chr12 116463379 116463678 -27322777 - AluSx SINE Alu -16 296 1 420 267 29 78 chr12 116464328 116464534 -27321921 - MIR3 SINE MIR -5 203 8 230 280 115 32 chr12 116465058 116465215 -27321240 + MARNA DNA Mariner 61 230 -356 289 109 0 73 chr12 116465231 116465286 -27321169 - L1PA8 LINE L1 -1 6171 6121 2425 89 7 0 chr12 116465353 116465656 -27320799 - AluSq SINE Alu -8 305 1 2729 166 76 3 chr12 116465685 116466253 -27320202 - L1MB7 LINE L1 -26 6158 5550 252 0 0 0 chr12 116466906 116466934 -27319521 + (T)n Simple_repeat Simple_repeat 1 28 0 1914 128 0 40 chr12 116467451 116467749 -27318706 + AluSx SINE Alu 1 286 -26 820 146 7 60 chr12 116468374 116468525 -27317930 - FLAM_C SINE Alu 0 143 1 2384 75 3 0 chr12 116468536 116468842 -27317613 - AluSp SINE Alu 0 307 1 819 209 107 0 chr12 116469143 116469349 -27317106 - L1ME LINE L1 -308 5813 5586 2236 95 3 0 chr12 116469362 116469672 -27316783 + AluSx SINE Alu 1 311 0 2177 114 10 16 chr12 116470075 116470383 -27316072 - AluSg SINE Alu -4 306 1 692 150 16 31 chr12 116470811 116470938 -27315517 - Tigger7 DNA MER2_type -45 2442 2318 4580 18 2 0 chr12 116471021 116471536 -27314919 - HERVK LTR ERVK -6727 516 1 8257 60 1 0 chr12 116471539 116472504 -27313951 - LTR5 LTR ERVK -3 966 1 180 0 0 0 chr12 116472525 116472545 -27313910 + (TTG)n Simple_repeat Simple_repeat 2 21 0 387 276 58 58 chr12 116472991 116473165 -27313290 - MIR3 SINE MIR -29 179 6 2315 109 0 0 chr12 116473180 116473491 -27312964 - AluSx SINE Alu -1 311 1 840 198 0 31 chr12 116473511 116473673 -27312782 - FAM SINE Alu -18 157 1 197 295 115 0 chr12 116473902 116473963 -27312492 - L2 LINE L2 -76 3196 3129 2691 37 0 0 chr12 116473990 116474288 -27312167 + AluY SINE Alu 1 298 -13 317 258 138 48 chr12 116476011 116476178 -27310277 - MIR SINE MIR -79 183 2 2367 82 0 3 chr12 116476987 116477290 -27309165 + AluSg1 SINE Alu 1 302 -7 2021 125 31 3 chr12 116477375 116477662 -27308793 + AluSq SINE Alu 1 295 -18 192 152 0 0 chr12 116477667 116477700 -27308755 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 303 221 21 42 chr12 116477700 116477795 -27308660 - L1MC4 LINE L1 -1339 6703 6611 2226 108 7 0 chr12 116478912 116479207 -27307248 - AluSq SINE Alu -16 297 1 2312 106 10 13 chr12 116479390 116479702 -27306753 - AluSx SINE Alu -1 311 1 2051 158 3 0 chr12 116479719 116480030 -27306425 - AluSx SINE Alu 0 312 1 365 208 52 21 chr12 116480190 116480225 -27306230 - AluJo/FRAM SINE Alu -14 288 256 1457 129 0 21 chr12 116480225 116480458 -27305997 - AluSg/x SINE Alu 0 312 85 365 208 52 21 chr12 116480458 116480518 -27305937 - AluJo/FRAM SINE Alu -46 256 190 1610 149 62 21 chr12 116480575 116480863 -27305592 - AluJb SINE Alu -8 304 5 2066 125 0 31 chr12 116480918 116481239 -27305216 + AluSx SINE Alu 1 311 -1 1889 157 3 10 chr12 116482119 116482424 -27304031 - AluJo SINE Alu -9 303 1 1752 167 16 43 chr12 116482514 116482787 -27303668 + AluJo SINE Alu 1 267 -45 2392 109 0 0 chr12 116482787 116483098 -27303357 - AluSx SINE Alu -1 311 1 1752 167 16 43 chr12 116483098 116483129 -27303326 + AluJo SINE Alu 267 297 -15 1777 177 7 20 chr12 116483214 116483519 -27302936 + AluJo SINE Alu 3 303 -9 2073 89 67 3 chr12 116483638 116483920 -27302535 + AluSg SINE Alu 3 302 -8 1905 112 48 18 chr12 116484506 116484833 -27301622 + THE1C LTR MaLR 1 375 0 565 130 65 9 chr12 116484856 116484964 -27301491 + Tigger7 DNA MER2_type 2257 2370 -121 1645 172 17 20 chr12 116484964 116485261 -27301194 + AluJo SINE Alu 1 296 -16 647 203 13 44 chr12 116485262 116485420 -27301035 - MER33 DNA MER1_type -171 153 1 479 222 99 37 chr12 116487056 116487218 -27299237 - L1MC5 LINE L1 -48 7913 7742 683 151 34 204 chr12 116487980 116488063 -27298392 - MER33 DNA MER1_type -2262 362 267 1691 191 0 17 chr12 116488063 116488356 -27298099 + AluJo SINE Alu 1 288 -24 683 151 34 204 chr12 116488356 116488389 -27298066 - MER33 DNA MER1_type -2357 267 230 1949 127 32 11 chr12 116488389 116488673 -27297782 + AluSx SINE Alu 1 290 -22 683 151 34 204 chr12 116488673 116488741 -27297714 - MER33 DNA MER1_type -2394 230 152 1768 191 0 0 chr12 116488741 116489045 -27297410 - AluJb SINE Alu -8 304 1 683 151 34 204 chr12 116489045 116489098 -27297357 - MER33 DNA MER1_type -2472 152 92 1970 76 23 8 chr12 116489098 116489362 -27297093 + AluSc SINE Alu 1 268 -41 1845 110 0 4 chr12 116489362 116489606 -27296849 - AluSq SINE Alu -32 281 37 683 151 34 204 chr12 116489606 116489655 -27296800 - MER33 DNA MER1_type -2531 93 116 2300 71 0 0 chr12 116489655 116489959 -27296496 - AluY SINE Alu 0 304 1 683 151 34 204 chr12 116489959 116490058 -27296397 - MER33 DNA MER1_type -2507 117 3 747 274 185 21 chr12 116490119 116490444 -27296011 - Tigger8 DNA MER2_type -254 412 35 2388 86 0 3 chr12 116490896 116491197 -27295258 + AluSp SINE Alu 2 301 -12 548 244 98 43 chr12 116491222 116491456 -27294999 + L1ME LINE L1 5534 5780 -390 2462 88 0 0 chr12 116492012 116492318 -27294137 + AluY SINE Alu 1 306 -5 276 230 92 0 chr12 116492573 116492660 -27293795 + MIR SINE MIR 54 148 -60 27 62 0 0 chr12 116492881 116492929 -27293526 + AT_rich Low_complexity Low_complexity 1 48 0 2114 125 0 7 chr12 116494421 116494716 -27291739 - AluSx SINE Alu -16 296 4 245 231 66 44 chr12 116494722 116494813 -27291642 - MIR SINE MIR -116 146 54 230 186 0 43 chr12 116494886 116494956 -27291499 - L1MC4 LINE L1 -1847 6195 6129 855 211 22 40 chr12 116495080 116495303 -27291152 - MIR SINE MIR -43 219 1 735 244 135 21 chr12 116495307 116495733 -27290722 - L1MC4 LINE L1 -322 5799 5315 2395 99 0 0 chr12 116497149 116497453 -27289002 + AluSx SINE Alu 1 304 -8 488 206 131 0 chr12 116497471 116497578 -27288877 + FLAM_A SINE Alu 4 124 -9 2328 77 11 0 chr12 116497702 116497988 -27288467 - AluSq SINE Alu -24 289 1 2195 105 10 16 chr12 116499838 116500152 -27286303 - AluSx SINE Alu 0 312 1 2106 139 0 13 chr12 116500368 116500678 -27285777 - AluSx SINE Alu -6 306 1 2231 94 30 3 chr12 116500817 116501115 -27285340 - AluSq SINE Alu -6 307 2 2258 103 3 26 chr12 116501129 116501441 -27285014 - AluSx SINE Alu -6 306 2 2468 68 0 0 chr12 116501467 116501762 -27284693 + AluY SINE Alu 1 295 -16 1720 103 16 109 chr12 116501899 116502220 -27284235 + AluY SINE Alu 10 300 -11 182 273 50 41 chr12 116503283 116503404 -27283051 + MIR SINE MIR 66 187 -75 790 248 80 27 chr12 116503467 116503729 -27282726 - L2 LINE L2 -28 3285 3010 247 207 86 25 chr12 116503745 116503838 -27282617 - MIR SINE MIR -23 185 79 1634 145 77 86 chr12 116509589 116509940 -27276515 - MER7A DNA MER2_type 0 346 1 902 119 67 0 chr12 116509984 116510118 -27276337 - AluJb SINE Alu -169 143 1 2006 122 7 3 chr12 116511050 116511336 -27275119 + AluSx SINE Alu 1 287 -25 2408 68 3 16 chr12 116512197 116512504 -27273951 + AluY SINE Alu 1 303 -8 1509 218 28 3 chr12 116512789 116513073 -27273382 - AluJo SINE Alu -11 291 1 240 263 161 66 chr12 116513074 116513097 -27273358 + L2 LINE L2 1688 1707 -1607 2252 84 14 3 chr12 116513097 116513393 -27273062 + AluSq SINE Alu 1 299 -14 240 263 161 66 chr12 116513393 116513514 -27272941 + L2 LINE L2 1707 1815 -1499 2161 112 10 3 chr12 116513514 116513818 -27272637 + AluSx SINE Alu 1 306 -6 240 263 161 66 chr12 116513818 116513915 -27272540 + L2 LINE L2 1815 1953 -1361 367 305 16 0 chr12 116514004 116514132 -27272323 - MER20 DNA MER1_type -2 217 88 408 275 142 50 chr12 116514132 116514958 -27271497 + L2 LINE L2 2338 3299 -14 1957 211 78 35 chr12 116515097 116515581 -27270874 + MLT1D LTR MaLR 1 505 0 2510 82 0 0 chr12 116515608 116515914 -27270541 - AluY SINE Alu -5 306 1 1033 96 7 14 chr12 116516406 116516552 -27269903 + AluSq/x SINE Alu 1 145 -168 2161 106 0 3 chr12 116516552 116516836 -27269619 + AluSg SINE Alu 1 283 -27 1063 209 31 15 chr12 116516836 116517095 -27269360 + L1MC4 LINE L1 7279 7541 -501 1099 83 0 0 chr12 116517116 116517249 -27269206 + AluSq/x SINE Alu 1 133 -180 2079 115 13 16 chr12 116517251 116517564 -27268891 + AluSq SINE Alu 1 312 -1 730 137 0 0 chr12 116517681 116517776 -27268679 + AluS SINE Alu 2 96 -217 1148 90 7 0 chr12 116517776 116517921 -27268534 - AluSc SINE Alu -163 146 1 2352 82 0 3 chr12 116517967 116518261 -27268194 - AluSg SINE Alu -17 293 1 634 276 149 13 chr12 116518261 116518489 -27267966 - MIR SINE MIR -3 259 1 1608 173 31 7 chr12 116519099 116519388 -27267067 - AluJo SINE Alu -16 296 1 768 205 104 81 chr12 116520612 116520686 -27265769 + L1ME4a LINE L1 5756 5827 -294 2255 96 0 7 chr12 116520686 116520989 -27265466 + AluSg1 SINE Alu 1 301 -8 768 205 104 81 chr12 116520989 116521088 -27265367 + L1ME4a LINE L1 5827 5922 -199 1847 158 14 3 chr12 116521088 116521373 -27265082 + AluJb SINE Alu 1 288 -24 768 205 104 81 chr12 116521373 116521545 -27264910 + L1ME4a LINE L1 5922 6110 -11 188 116 23 0 chr12 116521570 116521593 -27264862 + GA-rich Low_complexity Low_complexity 2 23 -22 2280 112 0 13 chr12 116521593 116521907 -27264548 + AluSg SINE Alu 1 310 0 188 116 23 0 chr12 116521907 116521926 -27264529 + GA-rich Low_complexity Low_complexity 23 45 0 1769 150 0 18 chr12 116522030 116522351 -27264104 + AluJb SINE Alu 1 316 0 1887 101 0 20 chr12 116522846 116523132 -27263323 + AluSp SINE Alu 41 321 0 2279 107 0 0 chr12 116523138 116523438 -27263017 + AluSx SINE Alu 1 300 -12 1028 148 7 0 chr12 116524159 116524314 -27262141 - AluJb SINE Alu -10 302 147 2496 63 0 10 chr12 116524333 116524635 -27261820 - AluY SINE Alu -12 299 1 351 0 0 0 chr12 116524751 116524790 -27261665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2128 127 3 0 chr12 116524899 116525199 -27261256 - AluSx SINE Alu -11 301 1 1657 163 32 3 chr12 116525205 116525487 -27260968 - AluJo SINE Alu -22 290 1 300 182 197 53 chr12 116525551 116525683 -27260772 + L1ME4a LINE L1 5969 6119 -2 26 39 0 20 chr12 116525696 116525727 -27260728 + AT_rich Low_complexity Low_complexity 1 32 -18 2142 88 3 14 chr12 116525727 116526012 -27260443 - AluSc SINE Alu -27 282 1 26 39 0 20 chr12 116526012 116526031 -27260424 + AT_rich Low_complexity Low_complexity 32 50 0 1532 173 28 0 chr12 116526302 116526556 -27259899 - AluJb SINE Alu -17 295 35 615 156 0 41 chr12 116526582 116526704 -27259751 + MIR SINE MIR 114 230 -32 2251 97 13 7 chr12 116526863 116527163 -27259292 - AluSx SINE Alu -10 302 1 263 144 16 12 chr12 116528015 116528078 -27258377 - L1MB7 LINE L1 0 6184 6120 708 137 93 14 chr12 116528080 116528219 -27258236 - L1M4 LINE L1 -748 5430 5281 450 36 0 0 chr12 116528458 116528514 -27257941 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1819 170 0 14 chr12 116528514 116528860 -27257595 + AluJb SINE Alu 1 342 0 2208 88 0 10 chr12 116529274 116529571 -27256884 + AluY SINE Alu 1 294 -17 4788 103 19 32 chr12 116530048 116530093 -27256362 - L1MA4A LINE L1 -6 6297 6253 2188 132 0 7 chr12 116530093 116530397 -27256058 + AluSx SINE Alu 1 302 -10 2348 78 3 3 chr12 116530397 116530693 -27255762 + AluSc SINE Alu 1 296 -13 4788 103 19 32 chr12 116530693 116531372 -27255083 - L1MA4A LINE L1 -48 6255 5581 198 103 0 0 chr12 116531517 116531546 -27254909 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 1238 188 9 0 chr12 116531561 116531785 -27254670 - AluJo SINE Alu -1 311 86 295 240 40 0 chr12 116531836 116531911 -27254544 - MIR SINE MIR -29 233 156 662 267 63 37 chr12 116531935 116532218 -27254237 - MLT1H LTR MaLR -222 327 1 321 303 25 8 chr12 116532220 116532339 -27254116 - L2 LINE L2 -44 3269 3149 * 770 286 31 9 chr12 116532309 116532533 -27253922 - L2 LINE L2 -415 2899 2671 1017 141 101 180 chr12 116532968 116533141 -27253314 + AluJo SINE Alu 1 138 -164 1799 133 3 55 chr12 116533141 116533274 -27253181 + AluJb SINE Alu 5 143 -165 2378 75 0 20 chr12 116533274 116533580 -27252875 + AluY SINE Alu 1 300 -11 1799 133 3 55 chr12 116533580 116533765 -27252690 + AluJb SINE Alu 143 308 0 1017 141 101 180 chr12 116533765 116533917 -27252538 + AluJo SINE Alu 138 301 -1 277 221 80 97 chr12 116533923 116534036 -27252419 + MLT1K LTR MaLR 462 572 -16 405 274 109 23 chr12 116534204 116534379 -27252076 - MIR SINE MIR -3 259 70 25 51 0 0 chr12 116534546 116534585 -27251870 + AT_rich Low_complexity Low_complexity 1 39 0 2127 119 3 0 chr12 116534592 116534878 -27251577 + AluSq SINE Alu 1 287 -26 450 114 84 6 chr12 116534881 116535047 -27251408 + (TA)n Simple_repeat Simple_repeat 2 180 0 411 59 102 0 chr12 116535091 116535209 -27251246 + (TA)n Simple_repeat Simple_repeat 1 130 0 2128 93 31 14 chr12 116535407 116535698 -27250757 + AluSx SINE Alu 1 296 -16 2591 34 0 0 chr12 116536054 116536345 -27250110 + AluY SINE Alu 1 291 -20 2166 115 0 3 chr12 116536356 116536644 -27249811 + AluSx SINE Alu 1 287 -25 643 180 0 33 chr12 116536957 116537079 -27249376 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr12 116537079 116537102 -27249353 + AT_rich Low_complexity Low_complexity 1 23 0 298 228 20 0 chr12 116537346 116537447 -27249008 + (TA)n Simple_repeat Simple_repeat 1 103 0 1533 177 16 35 chr12 116537511 116537827 -27248628 - AluJo SINE Alu -2 310 1 694 289 56 38 chr12 116537891 116538043 -27248412 - Charlie8 DNA MER1_type -68 273 112 2318 87 0 29 chr12 116538043 116538355 -27248100 - AluSq SINE Alu -10 303 1 694 289 56 38 chr12 116538355 116538468 -27247987 - Charlie8 DNA MER1_type -229 112 3 239 207 0 17 chr12 116538873 116538931 -27247524 + MIR SINE MIR 193 249 -13 2187 121 0 3 chr12 116539272 116539579 -27246876 - AluSx SINE Alu -6 306 1 424 247 27 58 chr12 116539634 116539813 -27246642 - MIR SINE MIR -43 219 47 2207 60 24 17 chr12 116541346 116541644 -27244811 - AluSx SINE Alu -12 300 1 335 192 0 0 chr12 116541696 116541769 -27244686 + LTR30 LTR ERV1 552 624 -98 227 208 0 0 chr12 116542877 116542925 -27243530 + T-rich Low_complexity Low_complexity 1 48 0 2256 116 0 0 chr12 116544270 116544571 -27241884 + AluSq SINE Alu 1 301 -12 1995 103 0 82 chr12 116544604 116544933 -27241522 - AluSx SINE Alu -10 302 1 2594 77 0 0 chr12 116545025 116545337 -27241118 + AluSx SINE Alu 1 312 0 22 0 0 0 chr12 116545339 116545361 -27241094 + AT_rich Low_complexity Low_complexity 1 22 0 2075 134 13 0 chr12 116546808 116547113 -27239342 - AluSx SINE Alu -3 309 1 588 233 122 11 chr12 116547137 116547326 -27239129 + L2 LINE L2 2552 2761 -553 650 241 23 22 chr12 116547326 116547504 -27238951 + L1ME1 LINE L1 6001 6178 0 2292 96 0 3 chr12 116547522 116547815 -27238640 + AluY SINE Alu 1 292 -19 334 294 183 8 chr12 116547820 116547946 -27238509 + MIR3 SINE MIR 51 198 -10 2566 53 0 7 chr12 116547988 116548290 -27238165 + AluY SINE Alu 1 300 -11 539 212 82 7 chr12 116548473 116548619 -27237836 + MIR SINE MIR 106 262 0 2200 105 3 7 chr12 116548884 116549179 -27237276 + AluSq SINE Alu 5 298 -15 1589 183 15 7 chr12 116549622 116549896 -27236559 + AluJb SINE Alu 1 276 -36 418 0 35 17 chr12 116549896 116549954 -27236501 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 2274 115 0 0 chr12 116549959 116550254 -27236201 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 116550933 116550961 -27235494 + AT_rich Low_complexity Low_complexity 1 28 0 2003 115 11 0 chr12 116551165 116551474 -27234981 + AluSq SINE Alu 1 312 0 2249 87 3 23 chr12 116551758 116552057 -27234398 - AluSg SINE Alu -17 293 1 1992 90 4 0 chr12 116553063 116553319 -27233136 - AluSx SINE Alu -55 257 1 1482 90 70 16 chr12 116553633 116553877 -27232578 + Tigger7 DNA MER2_type 2230 2486 -1 2366 99 0 3 chr12 116554101 116554414 -27232041 - AluSx SINE Alu 0 312 1 2367 81 3 3 chr12 116555107 116555403 -27231052 + AluSp SINE Alu 1 296 -17 1227 186 126 30 chr12 116555511 116555780 -27230675 + AluJo SINE Alu 1 295 -17 1301 132 218 0 chr12 116557542 116557785 -27228670 + AluJb SINE Alu 1 296 -16 30 27 0 0 chr12 116557917 116557954 -27228501 + AT_rich Low_complexity Low_complexity 1 37 0 2579 62 3 0 chr12 116558086 116558395 -27228060 - AluY SINE Alu -1 310 1 993 130 25 31 chr12 116558411 116558573 -27227882 - FRAM SINE Alu -5 161 1 2080 133 26 0 chr12 116558697 116558999 -27227456 - AluSx SINE Alu -1 311 2 2369 60 3 23 chr12 116559198 116559498 -27226957 - AluY SINE Alu -17 294 1 958 212 44 54 chr12 116559524 116559732 -27226723 - L1ME2 LINE L1 -147 6017 5812 2526 61 0 0 chr12 116559732 116560028 -27226427 - AluY SINE Alu -15 296 1 958 212 44 54 chr12 116560028 116560135 -27226320 - L1ME2 LINE L1 -352 5812 5705 2237 93 21 7 chr12 116560166 116560455 -27226000 + AluSx SINE Alu 3 295 -17 1768 120 13 70 chr12 116560877 116561193 -27225262 + AluSx SINE Alu 1 298 -14 2270 154 30 21 chr12 116561194 116561629 -27224826 + L1MB3 LINE L1 5577 6015 -168 714 137 7 98 chr12 116561630 116561783 -27224672 - FLAM_C SINE Alu 0 143 5 1142 91 0 59 chr12 116561787 116561925 -27224530 + L1MB3 LINE L1 6005 6131 -52 1953 103 68 7 chr12 116561925 116562039 -27224416 + AluSq SINE Alu 1 107 -206 2546 65 3 3 chr12 116562039 116562348 -27224107 + AluY SINE Alu 1 309 -2 1953 103 68 7 chr12 116562348 116562514 -27223941 + AluSq SINE Alu 107 298 -15 1142 91 0 59 chr12 116562514 116562561 -27223894 + L1MB3 LINE L1 6131 6179 -4 1038 204 44 124 chr12 116562566 116562674 -27223781 + L1MC4a LINE L1 6284 6399 -1409 2349 97 0 13 chr12 116562674 116562985 -27223470 - AluSc SINE Alu -2 307 1 1038 204 44 124 chr12 116562985 116563351 -27223104 + L1MC4a LINE L1 6399 6720 -1088 2268 33 92 4 chr12 116563363 116563635 -27222820 - AluY SINE Alu -15 296 1 1172 212 92 27 chr12 116563667 116564203 -27222252 - MLT1E2 LTR MaLR 0 626 1 2658 187 67 42 chr12 116564203 116564535 -27221920 + L1MC4 LINE L1 6818 7140 -902 2486 68 0 0 chr12 116564535 116564831 -27221624 + AluY SINE Alu 1 296 -15 2658 187 67 42 chr12 116564831 116564886 -27221569 + L1MC4 LINE L1 7140 7192 -850 2260 70 0 14 chr12 116564886 116565195 -27221260 + AluY SINE Alu 1 305 0 2658 187 67 42 chr12 116565195 116565521 -27220934 + L1MC4 LINE L1 7192 7551 -491 975 178 6 0 chr12 116565522 116565679 -27220776 + AluJb SINE Alu 137 294 -18 2215 118 3 13 chr12 116565715 116566029 -27220426 + AluSx SINE Alu 1 311 -1 2317 72 0 30 chr12 116566034 116566338 -27220117 + AluY SINE Alu 1 295 -16 391 223 187 0 chr12 116566341 116566480 -27219975 + L1MC4 LINE L1 7632 7796 -246 1741 142 8 4 chr12 116566504 116566771 -27219684 + AluJo SINE Alu 1 268 -44 845 183 0 0 chr12 116566831 116566973 -27219482 + AluJb SINE Alu 162 303 -9 2198 95 14 0 chr12 116567004 116567287 -27219168 + AluSx SINE Alu 1 287 -25 2213 77 34 14 chr12 116567524 116567821 -27218634 - AluSp SINE Alu -9 304 2 2461 93 0 6 chr12 116567822 116568134 -27218321 - AluSx SINE Alu -2 310 1 219 204 20 0 chr12 116568411 116568460 -27217995 + (TA)n Simple_repeat Simple_repeat 2 51 0 2401 101 0 0 chr12 116569030 116569337 -27217118 + AluSx SINE Alu 1 307 -5 2118 129 30 0 chr12 116569537 116569839 -27216616 - AluSx SINE Alu -1 311 1 824 164 113 0 chr12 116569963 116570122 -27216333 - AluJo SINE Alu -10 302 126 2220 118 3 0 chr12 116570282 116570587 -27215868 - AluSx SINE Alu -1 311 6 469 265 122 5 chr12 116570782 116570971 -27215484 + L2 LINE L2 2552 2762 -552 558 250 38 25 chr12 116570973 116571133 -27215322 + L1ME1 LINE L1 6000 6161 -5 2218 78 24 10 chr12 116571155 116571449 -27215006 + AluSc SINE Alu 2 299 -10 226 320 164 8 chr12 116571455 116571577 -27214878 + MIR3 SINE MIR 58 198 -10 285 161 36 0 chr12 116571797 116571853 -27214602 + MIR SINE MIR 106 163 -99 1510 87 0 10 chr12 116571870 116572066 -27214389 + AluSg/x SINE Alu 109 302 -10 2082 60 0 0 chr12 116572195 116572444 -27214011 + AluY SINE Alu 52 300 -11 2261 96 3 13 chr12 116572733 116573046 -27213409 + AluSx SINE Alu 1 310 -2 296 191 106 43 chr12 116574614 116574708 -27211747 - MIR SINE MIR -70 192 93 771 270 87 40 chr12 116574798 116575168 -27211287 - MER113 DNA MER1_type? -3 518 132 1798 168 14 3 chr12 116575252 116575549 -27210906 + AluJb SINE Alu 1 300 -12 1880 142 21 0 chr12 116575746 116576034 -27210421 + AluJb SINE Alu 1 294 -18 242 188 0 0 chr12 116576053 116576101 -27210354 - L2 LINE L2 -299 2973 2926 318 264 0 55 chr12 116576199 116576309 -27210146 - L2 LINE L2 -15 3298 3195 229 250 119 60 chr12 116576330 116576414 -27210041 - L2 LINE L2 -15 3257 3169 2322 101 0 3 chr12 116576450 116576747 -27209708 - AluSx SINE Alu -16 296 1 266 236 164 9 chr12 116576846 116576956 -27209499 + L2 LINE L2 2942 3068 -245 2419 83 0 7 chr12 116577649 116577950 -27208505 + AluSg SINE Alu 1 299 -11 360 255 124 89 chr12 116578081 116578408 -27208047 - L2 LINE L2 0 3313 2999 812 161 8 0 chr12 116578408 116578538 -27207917 + FLAM_A SINE Alu 1 131 -2 360 255 124 89 chr12 116578538 116578744 -27207711 - L2 LINE L2 -314 2999 2802 1752 119 52 93 chr12 116578744 116579054 -27207401 - AluJb SINE Alu -15 297 1 1625 144 17 121 chr12 116579056 116579404 -27207051 - AluJb SINE Alu 0 312 1 360 255 124 89 chr12 116579404 116579476 -27206979 - L2 LINE L2 -511 2802 2642 2534 60 0 0 chr12 116579486 116579787 -27206668 + AluY SINE Alu 1 301 -10 1228 114 0 12 chr12 116579787 116579953 -27206502 + AluSp SINE Alu 134 297 -16 311 339 16 0 chr12 116579998 116580125 -27206330 - L2 LINE L2 -728 2586 2458 232 243 40 14 chr12 116580325 116580399 -27206056 - MLT1K LTR MaLR 0 588 513 1813 168 0 3 chr12 116580403 116580694 -27205761 + AluJb SINE Alu 5 294 -18 1117 144 12 0 chr12 116580931 116581104 -27205351 - AluSx SINE Alu -17 295 121 2079 114 4 0 chr12 116581577 116581857 -27204598 - AluSg SINE Alu -29 281 1 941 114 38 0 chr12 116581857 116581988 -27204467 - AluSx SINE Alu -177 136 1 192 292 0 0 chr12 116582040 116582088 -27204367 - MIR SINE MIR -74 134 87 754 255 119 56 chr12 116582110 116582537 -27203918 - L1MC4a LINE L1 -1613 6195 5742 251 284 243 56 chr12 116582978 116583002 -27203453 - L2 LINE L2 -6 3307 3289 2568 78 0 0 chr12 116583002 116583310 -27203145 + AluY SINE Alu 1 308 -3 251 284 243 56 chr12 116583310 116583680 -27202775 - L2 LINE L2 -24 3289 2839 2116 137 7 0 chr12 116583735 116584042 -27202413 - AluSq SINE Alu -4 309 1 339 255 11 11 chr12 116584112 116584206 -27202249 - L1ME3A LINE L1 -7 6163 6070 813 159 0 16 chr12 116584219 116584345 -27202110 - FLAM_C SINE Alu -19 124 1 186 43 0 0 chr12 116584394 116584417 -27202038 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1966 112 51 7 chr12 116584420 116584696 -27201759 - AluSx SINE Alu -24 288 1 2008 97 3 41 chr12 116585056 116585346 -27201109 - AluSx SINE Alu -1 311 33 1845 164 0 30 chr12 116585545 116585850 -27200605 + AluJo SINE Alu 2 297 -15 24 0 0 0 chr12 116586136 116586160 -27200295 + AT_rich Low_complexity Low_complexity 1 24 0 2254 117 3 0 chr12 116586187 116586494 -27199961 - AluSq SINE Alu -5 308 1 1671 169 19 33 chr12 116586982 116587114 -27199341 + AluJb SINE Alu 1 133 -179 2227 106 3 17 chr12 116587114 116587415 -27199040 + AluSx SINE Alu 1 297 -15 2257 98 0 10 chr12 116587418 116587715 -27198740 + AluSx SINE Alu 1 294 -18 1671 169 19 33 chr12 116587715 116587885 -27198570 + AluJb SINE Alu 135 303 -9 1670 93 9 0 chr12 116587896 116588110 -27198345 + AluSx SINE Alu 7 222 -90 244 43 0 64 chr12 116588111 116588158 -27198297 + AluSx SINE Alu 260 303 0 28 0 0 0 chr12 116589112 116589140 -27197315 + AT_rich Low_complexity Low_complexity 1 28 0 2250 114 0 3 chr12 116590099 116590396 -27196059 + AluSx SINE Alu 1 296 -16 682 226 87 15 chr12 116591219 116591414 -27195041 - MIR SINE MIR -19 243 35 2256 62 69 0 chr12 116591680 116591970 -27194485 - AluSx SINE Alu -2 310 1 2267 80 13 3 chr12 116592961 116593261 -27193194 - AluSx SINE Alu -9 303 1 357 238 88 66 chr12 116593276 116593457 -27192998 - L2 LINE L2 -9 3304 3120 2283 69 11 0 chr12 116593468 116593742 -27192713 + AluSg SINE Alu 1 277 -33 379 197 0 0 chr12 116593875 116593946 -27192509 - AluJ/FRAM SINE Alu -6 296 226 493 239 31 15 chr12 116594386 116594516 -27191939 - Charlie8 DNA MER1_type -2180 237 106 295 250 11 11 chr12 116595125 116595213 -27191242 + MIR SINE MIR 66 153 -109 1656 148 28 32 chr12 116596063 116596347 -27190108 + AluJb SINE Alu 1 283 -29 2226 125 0 3 chr12 116596379 116596684 -27189771 + AluSx SINE Alu 1 304 -8 1688 172 3 35 chr12 116596777 116597091 -27189364 + AluJb SINE Alu 1 304 -8 1200 105 19 0 chr12 116597094 116597256 -27189199 + AluSg/x SINE Alu 141 305 -7 2193 113 3 0 chr12 116597310 116597602 -27188853 + AluSx SINE Alu 1 293 -19 2403 91 0 0 chr12 116597607 116597940 -27188515 + AluSg SINE Alu 3 310 0 1094 105 12 47 chr12 116597940 116598112 -27188343 + AluSg/x SINE Alu 134 299 -13 25 0 0 0 chr12 116598739 116598764 -27187691 + AT_rich Low_complexity Low_complexity 1 25 0 1578 171 36 33 chr12 116599002 116599307 -27187148 + AluJb SINE Alu 1 306 -6 314 237 132 35 chr12 116599942 116600056 -27186399 + MER94 DNA DNA 1 125 -9 21 0 0 0 chr12 116600331 116600352 -27186103 + AT_rich Low_complexity Low_complexity 1 21 0 2322 99 0 13 chr12 116600862 116601166 -27185289 - AluSx SINE Alu -12 300 1 2441 80 0 0 chr12 116601240 116601539 -27184916 - AluSg SINE Alu -11 299 1 32 0 0 0 chr12 116601577 116601609 -27184846 + AT_rich Low_complexity Low_complexity 1 32 0 321 359 73 29 chr12 116602655 116602928 -27183527 + L3 LINE CR1 104 388 -1189 22 0 0 0 chr12 116602961 116602983 -27183472 + AT_rich Low_complexity Low_complexity 1 22 0 1294 209 55 17 chr12 116604651 116604943 -27181512 - MER82 DNA MER2_type 0 653 351 422 153 141 24 chr12 116604952 116605037 -27181418 + AluJb SINE Alu 192 286 -26 2384 88 0 10 chr12 116605047 116605343 -27181112 + AluSg SINE Alu 1 293 -17 1329 169 0 5 chr12 116605350 116605563 -27180892 + AluJo SINE Alu 89 300 -12 1534 123 14 0 chr12 116605568 116605787 -27180668 - MER82 DNA MER2_type -299 354 133 2437 70 0 10 chr12 116605851 116606150 -27180305 + AluY SINE Alu 1 296 -15 2285 109 0 0 chr12 116606405 116606718 -27179737 + AluSq SINE Alu 1 313 0 2415 55 3 0 chr12 116606734 116607043 -27179412 + L1PA8 LINE L1 5805 6114 -58 267 237 50 136 chr12 116607099 116607297 -27179158 + Charlie8 DNA MER1_type 195 375 -2042 207 346 0 65 chr12 116607297 116607404 -27179051 - L2 LINE L2 -100 3172 3073 2261 85 10 3 chr12 116607770 116608076 -27178379 - AluSg SINE Alu -2 308 1 22 0 0 0 chr12 116608076 116608098 -27178357 + AT_rich Low_complexity Low_complexity 1 22 0 1138 122 6 0 chr12 116608374 116608538 -27177917 + AluSp SINE Alu 137 301 -12 191 268 14 28 chr12 116609069 116609140 -27177315 + MIR SINE MIR 23 92 -170 1024 117 0 0 chr12 116609217 116609354 -27177101 + AluSq/x SINE Alu 1 137 -175 2250 75 3 3 chr12 116609355 116609647 -27176808 + AluSp SINE Alu 1 292 -21 261 349 28 0 chr12 116610457 116610563 -27175892 + MIR SINE MIR 117 225 -37 1916 118 36 0 chr12 116610809 116611089 -27175366 + AluSx SINE Alu 1 290 -22 2104 120 13 0 chr12 116611108 116611416 -27175039 + AluSq SINE Alu 1 312 -1 2227 92 0 0 chr12 116612480 116612773 -27173682 - AluSx SINE Alu -19 293 1 7511 113 54 49 chr12 116612786 116613932 -27172523 + MER52C LTR ERV1 1 1156 -122 2423 81 0 0 chr12 116613932 116614240 -27172215 + AluSg SINE Alu 1 308 -2 7511 113 54 49 chr12 116614240 116614364 -27172091 + MER52C LTR ERV1 1156 1278 0 378 271 36 72 chr12 116614445 116614571 -27171884 + MIR SINE MIR 89 209 -53 1879 108 70 18 chr12 116614571 116614857 -27171598 + AluSg SINE Alu 1 301 -9 378 271 36 72 chr12 116614857 116614896 -27171559 + MIR SINE MIR 209 248 -14 321 172 31 0 chr12 116615021 116615085 -27171370 + MER5A DNA MER1_type 51 116 -73 1979 116 14 3 chr12 116615563 116615855 -27170600 + AluSx SINE Alu 1 295 -17 1944 92 3 54 chr12 116615938 116616266 -27170189 + AluSp SINE Alu 3 315 0 770 256 66 48 chr12 116618035 116618324 -27168131 + MER102a DNA MER1_type 3 296 -34 180 282 29 68 chr12 116619738 116619841 -27166614 - L2 LINE L2 -521 2793 2695 180 77 0 0 chr12 116620233 116620259 -27166196 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2158 83 4 0 chr12 116620266 116620542 -27165913 - AluSp SINE Alu -36 277 1 898 198 22 16 chr12 116621139 116621321 -27165134 - AluJo SINE Alu -129 183 1 1266 163 77 12 chr12 116621460 116621648 -27164807 + L1MC4 LINE L1 6820 7029 -1013 2179 113 0 0 chr12 116621648 116621950 -27164505 + AluSx SINE Alu 1 302 -10 1266 163 77 12 chr12 116621950 116622007 -27164448 + L1MC4 LINE L1 7029 7081 -961 545 245 48 0 chr12 116622008 116622155 -27164300 + L1MC4 LINE L1 7239 7392 -650 911 172 0 7 chr12 116622156 116622307 -27164148 + FRAM SINE Alu 13 162 -14 2164 81 17 0 chr12 116622307 116622605 -27163850 + AluY SINE Alu 1 303 -8 613 158 0 153 chr12 116622617 116622813 -27163642 + L1MC4 LINE L1 7386 7551 -491 2233 92 0 3 chr12 116622814 116623119 -27163336 + AluSx SINE Alu 1 304 -8 864 241 10 0 chr12 116623119 116623322 -27163133 + L1MC4 LINE L1 7697 7901 -141 492 263 15 15 chr12 116623387 116623520 -27162935 + Charlie8 DNA MER1_type 49 181 -2236 802 215 11 54 chr12 116623555 116623596 -27162859 - AluJo/FRAM SINE Alu -2 310 269 2300 93 0 0 chr12 116623596 116623898 -27162557 + AluY SINE Alu 1 302 -9 802 215 11 54 chr12 116623898 116624042 -27162413 - AluJo/FRAM SINE Alu -43 269 133 202 194 0 0 chr12 116624208 116624244 -27162211 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 1601 181 16 13 chr12 116624748 116625058 -27161397 + AluJo SINE Alu 1 311 -1 2369 65 3 16 chr12 116625127 116625436 -27161019 + AluSg SINE Alu 1 305 -5 1398 89 28 14 chr12 116625634 116625848 -27160607 - AluSq SINE Alu -10 303 87 721 288 53 30 chr12 116625852 116626154 -27160301 + L2 LINE L2 2973 3281 -32 1533 192 132 25 chr12 116626411 116626963 -27159492 - MER51B LTR ERV1 0 377 1 25 0 0 0 chr12 116627413 116627438 -27159017 + GC_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 116627487 116627512 -27158943 + GC_rich Low_complexity Low_complexity 1 25 0 291 267 0 17 chr12 116627570 116627686 -27158769 + (CGG)n Simple_repeat Simple_repeat 2 115 0 316 263 88 26 chr12 116628997 116629111 -27157344 + MIR SINE MIR 103 223 -39 507 248 18 0 chr12 116629236 116629349 -27157106 + L2 LINE L2 3198 3312 -1 1056 185 28 23 chr12 116629566 116629782 -27156673 + MER20 DNA MER1_type 1 217 -2 1003 145 135 16 chr12 116630444 116630637 -27155818 - MER20 DNA MER1_type 0 219 4 241 256 179 0 chr12 116630765 116630843 -27155612 - MIR SINE MIR -12 250 159 1725 162 0 4 chr12 116630936 116631237 -27155218 + AluJb SINE Alu 6 305 0 183 80 0 0 chr12 116631294 116631319 -27155136 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 738 151 22 22 chr12 116631388 116631567 -27154888 + CT-rich Low_complexity Low_complexity 2 180 0 638 237 178 0 chr12 116631567 116631719 -27154736 - AluJo/FRAM SINE Alu 0 312 134 1892 148 0 13 chr12 116631719 116632024 -27154431 - AluSx SINE Alu -11 301 1 573 311 44 0 chr12 116632025 116632205 -27154250 - L1ME LINE L1 -321 5800 5613 2051 116 0 10 chr12 116633022 116633315 -27153140 + AluSx SINE Alu 1 290 -22 573 217 98 21 chr12 116633376 116633519 -27152936 - MER117 DNA MER1_type -43 154 1 478 214 18 36 chr12 116633787 116633899 -27152556 - MIR SINE MIR -63 145 36 207 0 0 0 chr12 116634244 116634267 -27152188 + (TG)n Simple_repeat Simple_repeat 2 24 0 898 192 0 0 chr12 116634267 116634423 -27152032 - FRAM SINE Alu -21 155 1 2276 95 0 3 chr12 116634428 116634732 -27151723 - AluSg SINE Alu -7 303 1 21 0 0 0 chr12 116634884 116634905 -27151550 + AT_rich Low_complexity Low_complexity 1 21 0 1356 98 122 0 chr12 116634945 116635044 -27151411 + MER30 DNA MER1_type 1 87 -143 192 40 0 0 chr12 116635044 116635069 -27151386 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1356 98 122 0 chr12 116635069 116635174 -27151281 + MER30 DNA MER1_type 87 230 0 344 271 82 16 chr12 116636386 116636508 -27149947 - MIR SINE MIR -63 199 70 2188 82 16 13 chr12 116636700 116637006 -27149449 + AluSg SINE Alu 1 307 -3 1994 118 0 14 chr12 116637580 116637901 -27148554 - AluSx SINE Alu 0 317 1 540 252 0 0 chr12 116637914 116638041 -27148414 - MIR SINE MIR -14 248 122 1570 118 106 0 chr12 116638042 116638288 -27148167 + AluSx SINE Alu 2 273 -39 1325 97 40 26 chr12 116638459 116638686 -27147769 - L1MB7 LINE L1 -67 6117 5888 678 281 43 8 chr12 116639343 116639584 -27146871 - MIR SINE MIR 0 262 7 345 277 19 21 chr12 116639638 116639753 -27146702 + MIR SINE MIR 43 155 -53 201 162 27 0 chr12 116640011 116640048 -27146407 + (CCCA)n Simple_repeat Simple_repeat 1 38 0 553 284 66 72 chr12 116640265 116640402 -27146053 - L2 LINE L2 -14 3258 3122 2058 109 7 7 chr12 116640402 116640695 -27145760 + AluSx SINE Alu 1 293 -19 553 284 66 72 chr12 116640695 116640905 -27145550 - L2 LINE L2 -150 3122 2913 392 289 114 38 chr12 116641320 116641411 -27145044 - MIR SINE MIR -14 248 165 2408 49 7 7 chr12 116641411 116641717 -27144738 + AluY SINE Alu 1 306 -5 392 289 114 38 chr12 116641717 116641836 -27144619 - MIR SINE MIR -97 165 22 658 218 67 11 chr12 116642002 116642181 -27144274 + L2 LINE L2 3121 3309 -4 2009 123 3 3 chr12 116642372 116642664 -27143791 + AluSx SINE Alu 1 292 -20 228 293 0 0 chr12 116643133 116643191 -27143264 + (TG)n Simple_repeat Simple_repeat 2 59 0 273 219 61 24 chr12 116643276 116643358 -27143097 + MIR SINE MIR 108 192 -70 409 259 144 29 chr12 116643505 116643644 -27142811 - MIR SINE MIR -1 261 107 188 256 67 33 chr12 116643645 116643735 -27142720 + MIR SINE MIR 137 229 -33 * 590 208 8 16 chr12 116643715 116643840 -27142615 + MIR SINE MIR 48 171 -91 380 247 0 0 chr12 116643840 116643937 -27142518 - MER20 DNA MER1_type 0 219 123 739 190 14 0 chr12 116644111 116644253 -27142202 + MIR SINE MIR 28 171 -91 1055 209 0 32 chr12 116644259 116644479 -27141976 - MER20 DNA MER1_type -6 213 1 338 336 74 0 chr12 116645206 116645355 -27141100 - MIR SINE MIR -90 172 13 349 125 0 0 chr12 116645386 116645447 -27141008 - MIR SINE MIR -59 149 88 2057 113 0 0 chr12 116645448 116645732 -27140723 - AluSx SINE Alu -22 290 7 716 275 0 5 chr12 116645764 116645953 -27140502 - MIR SINE MIR -52 210 23 265 268 196 22 chr12 116646325 116646463 -27139992 + MIR SINE MIR 15 176 -86 233 339 142 23 chr12 116646471 116646689 -27139766 - L2 LINE L2 -62 3210 2967 232 232 0 6 chr12 116646725 116646792 -27139663 + MIR SINE MIR 92 145 -63 403 299 140 14 chr12 116646888 116647095 -27139360 - MIR SINE MIR -15 247 15 22 0 0 0 chr12 116647455 116647477 -27138978 + GC_rich Low_complexity Low_complexity 1 22 0 836 164 6 0 chr12 116647904 116648081 -27138374 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 798 170 21 12 chr12 116648098 116648683 -27137772 + (TCCA)n Simple_repeat Simple_repeat 1 590 0 368 370 6 17 chr12 116648723 116648807 -27137648 + (TCCA)n Simple_repeat Simple_repeat 1 84 -95 2138 98 3 10 chr12 116648807 116649104 -27137351 - AluSg SINE Alu -15 295 1 368 370 6 17 chr12 116649104 116649200 -27137255 + (TCCA)n Simple_repeat Simple_repeat 84 179 0 290 194 15 0 chr12 116649222 116649289 -27137166 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 321 298 16 8 chr12 116649303 116649424 -27137031 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 254 29 29 0 chr12 116649501 116649536 -27136919 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 358 344 0 0 chr12 116649609 116649731 -27136724 + (TTCA)n Simple_repeat Simple_repeat 4 125 0 498 351 25 38 chr12 116650535 116650552 -27135903 - L2 LINE L2 0 3272 3256 2100 134 0 0 chr12 116650552 116650858 -27135597 - AluSx SINE Alu -6 306 1 498 351 25 38 chr12 116650858 116651207 -27135248 - L2 LINE L2 -16 3256 2911 218 304 163 0 chr12 116651942 116652034 -27134421 - L2 LINE L2 -2 3311 3205 255 211 0 0 chr12 116652060 116652112 -27134343 + L2 LINE L2 3262 3313 0 196 262 0 0 chr12 116652286 116652328 -27134127 - MIR SINE MIR 0 262 221 1032 134 12 16 chr12 116652546 116653526 -27132929 + (TGGA)n Simple_repeat Simple_repeat 1 975 0 258 140 0 0 chr12 116654083 116654133 -27132322 + MIR SINE MIR 81 130 -132 180 77 0 0 chr12 116654133 116654159 -27132296 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 393 205 246 8 chr12 116654179 116654301 -27132154 + MIR SINE MIR 7 157 -105 690 191 88 7 chr12 116654688 116654835 -27131620 + AluJb SINE Alu 137 295 -17 573 217 98 21 chr12 116655029 116655172 -27131283 + MER117 DNA MER1_type 1 154 -43 1932 115 7 11 chr12 116655233 116655519 -27130936 - AluSx SINE Alu -22 290 6 227 256 179 0 chr12 116655612 116655690 -27130765 + MIR SINE MIR 159 250 -12 845 202 16 16 chr12 116655823 116656011 -27130444 + MER20 DNA MER1_type 32 219 0 2277 83 6 13 chr12 116656339 116656653 -27129802 - AluSx SINE Alu 0 312 1 291 91 30 45 chr12 116656669 116656735 -27129720 + T-rich Low_complexity Low_complexity 4 68 0 1967 138 0 31 chr12 116656737 116656915 -27129540 - AluJb SINE Alu -3 309 144 1979 126 0 3 chr12 116656915 116657209 -27129246 - AluSx SINE Alu -15 297 5 1967 138 0 31 chr12 116657209 116657349 -27129106 - AluJb SINE Alu -168 144 1 271 188 29 0 chr12 116657624 116657693 -27128762 - AluS SINE Alu 0 300 230 323 239 9 80 chr12 116659403 116659516 -27126939 - MER31A LTR ERV1 -28 457 353 1746 177 0 0 chr12 116659728 116660028 -27126427 - AluJb SINE Alu -8 304 5 238 289 0 12 chr12 116660713 116660796 -27125659 - L2 LINE L2 -199 3073 2992 431 287 85 31 chr12 116660882 116661324 -27125131 - LTR33 LTR ERVL 0 521 1 848 95 0 0 chr12 116662038 116662154 -27124301 + AluSp/q SINE Alu 189 304 -9 622 290 41 14 chr12 116662157 116662378 -27124077 - MIR SINE MIR -1 261 35 229 292 15 0 chr12 116662511 116662576 -27123879 + MLT1I LTR MaLR 72 137 -272 1840 146 3 24 chr12 116662601 116662895 -27123560 - AluJb SINE Alu -19 293 6 944 158 0 0 chr12 116662935 116663074 -27123381 - U4 snRNA snRNA -2 143 5 812 289 20 20 chr12 116663083 116663329 -27123126 + MLT1I LTR MaLR 164 409 0 1877 137 18 3 chr12 116663919 116664204 -27122251 - AluSx SINE Alu -18 294 6 800 230 25 10 chr12 116664215 116664415 -27122040 - L1ME3A LINE L1 -5 6165 5963 2063 194 60 29 chr12 116664583 116664943 -27121512 + MER90 LTR ERV1 1 381 -233 1871 137 24 3 chr12 116664943 116665235 -27121220 + AluSx SINE Alu 1 298 -14 2063 194 60 29 chr12 116665235 116665358 -27121097 + MER90 LTR ERV1 381 499 -115 463 163 0 33 chr12 116665358 116665450 -27121005 - L1MB3 LINE L1 0 6183 6095 1706 169 0 23 chr12 116665552 116665854 -27120601 + AluJo SINE Alu 6 300 -12 317 339 58 58 chr12 116665920 116666200 -27120255 - L1ME4a LINE L1 -11 6110 5828 2079 122 0 26 chr12 116666200 116666512 -27119943 - AluSx SINE Alu -6 306 3 317 339 58 58 chr12 116666512 116666544 -27119911 - L1ME4a LINE L1 -292 5829 5798 190 244 0 0 chr12 116666901 116666946 -27119509 + L2 LINE L2 3263 3307 -6 345 319 63 46 chr12 116666947 116667185 -27119270 - MIR SINE MIR -14 248 7 1659 171 3 26 chr12 116667191 116667514 -27118941 - AluJb SINE Alu 0 312 1 850 117 7 36 chr12 116667519 116667656 -27118799 - FRAM SINE Alu -18 158 26 207 143 41 0 chr12 116668787 116668836 -27117619 + (CGG)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr12 116668842 116668870 -27117585 + GC_rich Low_complexity Low_complexity 1 28 0 301 272 56 32 chr12 116668986 116669111 -27117344 + MIR SINE MIR 86 213 -49 550 286 27 16 chr12 116669114 116669299 -27117156 + L1MC/D LINE L1 5567 5753 -2055 576 302 33 19 chr12 116669384 116669596 -27116859 - MIR SINE MIR 0 262 48 201 250 25 62 chr12 116669652 116669732 -27116723 + MIR3 SINE MIR 114 190 -18 480 222 52 33 chr12 116670051 116670204 -27116251 - L2 LINE L2 -1089 2225 2070 405 251 81 37 chr12 116670203 116670385 -27116070 - MIR SINE MIR -59 203 19 * 1321 132 151 23 chr12 116670385 116670650 -27115805 - AluJb SINE Alu -13 299 1 405 251 81 37 chr12 116670650 116670665 -27115790 - MIR SINE MIR -243 19 6 23 0 0 0 chr12 116671253 116671276 -27115179 + AT_rich Low_complexity Low_complexity 1 23 0 254 290 54 11 chr12 116671281 116671374 -27115081 + L1MC/D LINE L1 5814 5910 -1898 2314 94 0 0 chr12 116671551 116671850 -27114605 + AluSx SINE Alu 1 299 -13 757 163 0 50 chr12 116672437 116672578 -27113877 - AluJo SINE Alu -177 135 2 218 156 78 47 chr12 116672954 116673018 -27113437 + MIR SINE MIR 59 124 -84 821 173 8 0 chr12 116673227 116673354 -27113101 - FLAM_A SINE Alu -1 132 5 193 231 26 0 chr12 116673363 116673402 -27113053 - L2 LINE L2 -11 3302 3263 * 649 271 72 25 chr12 116673368 116673604 -27112851 - MIR SINE MIR -10 252 6 180 97 0 0 chr12 116674056 116674087 -27112368 + (TG)n Simple_repeat Simple_repeat 2 32 0 1944 159 0 0 chr12 116674100 116674402 -27112053 - AluJb SINE Alu -10 302 1 654 255 110 10 chr12 116674406 116674606 -27111849 - MIR SINE MIR -6 256 37 1788 154 14 0 chr12 116675079 116675365 -27111090 - AluJb SINE Alu -22 290 1 257 293 72 50 chr12 116675859 116676081 -27110374 - L2 LINE L2 -160 3112 2886 573 256 37 11 chr12 116676564 116676755 -27109700 - MIR SINE MIR -59 203 8 216 0 0 0 chr12 116677241 116677265 -27109190 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 723 95 11 0 chr12 116677274 116677409 -27109046 - AluSg/x SINE Alu 0 323 188 255 31 0 0 chr12 116677566 116677598 -27108857 + (CACCC)n Simple_repeat Simple_repeat 4 35 0 189 0 0 0 chr12 116677976 116677997 -27108458 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5953 22 0 0 chr12 116678060 116678726 -27107729 - L1PA3 LINE L1 0 6155 5490 462 193 149 9 chr12 116678808 116678922 -27107533 + L2 LINE L2 3184 3313 0 467 296 51 59 chr12 116678949 116679202 -27107253 + MIR SINE MIR 12 262 0 460 238 54 60 chr12 116679198 116679366 -27107089 - MIR SINE MIR -64 198 32 * 363 301 108 17 chr12 116679382 116679565 -27106890 - MIR SINE MIR -20 242 37 2210 98 0 0 chr12 116679565 116679860 -27106595 + AluSq SINE Alu 1 295 -18 363 301 108 17 chr12 116679860 116679900 -27106555 - MIR SINE MIR -225 37 2 359 244 0 0 chr12 116680381 116680467 -27105988 - MIR SINE MIR -116 146 61 1901 91 94 4 chr12 116680467 116680743 -27105712 + AluSg SINE Alu 1 301 -9 285 306 32 57 chr12 116681239 116681363 -27105092 + MER5A DNA MER1_type 69 189 0 919 169 120 0 chr12 116682777 116682960 -27103495 - MER20 DNA MER1_type 0 219 15 207 333 49 0 chr12 116683293 116683374 -27103081 - L2 LINE L2 -1 3271 3187 252 286 89 27 chr12 116683504 116683616 -27102839 + MIR3 SINE MIR 37 155 -53 711 296 143 18 chr12 116683669 116684118 -27102337 - L2 LINE L2 0 3313 2809 224 352 87 15 chr12 116685231 116685427 -27101028 + L2 LINE L2 2849 3058 -214 188 313 47 0 chr12 116685452 116685516 -27100939 + L2 LINE L2 3206 3272 0 1454 167 117 0 chr12 116686929 116687193 -27099262 + AluJb SINE Alu 4 298 -14 227 280 0 65 chr12 116687403 116687510 -27098945 + MER102a DNA MER1_type 231 330 0 553 229 81 32 chr12 116687536 116687732 -27098723 - MIR SINE MIR -50 212 2 240 196 0 0 chr12 116687708 116687754 -27098701 - L2 LINE L2 -1 3312 3267 * 437 208 32 8 chr12 116688474 116688600 -27097855 + MIR SINE MIR 39 168 -62 2055 113 20 10 chr12 116688679 116688980 -27097475 - AluSx SINE Alu -8 304 1 398 280 49 7 chr12 116688980 116689123 -27097332 - MIR SINE MIR -97 165 17 649 251 25 0 chr12 116689405 116689568 -27096887 - MLT1K LTR MaLR -2 586 420 409 301 84 0 chr12 116689667 116689810 -27096645 - MLT1K LTR MaLR -330 258 104 450 249 101 3 chr12 116690224 116690395 -27096060 + MIR SINE MIR 42 227 -35 257 258 48 6 chr12 116690718 116690821 -27095634 + CT-rich Low_complexity Low_complexity 1 174 0 615 307 83 5 chr12 116690961 116691179 -27095276 - MIR SINE MIR -11 251 17 498 306 144 5 chr12 116693063 116693285 -27093170 - MIR SINE MIR 0 262 10 229 299 78 0 chr12 116693361 116693438 -27093017 - MER5B DNA MER1_type -81 97 15 430 231 109 58 chr12 116693822 116693978 -27092477 - MER5B DNA MER1_type 0 178 15 1085 108 0 30 chr12 116693983 116694149 -27092306 + FRAM SINE Alu 7 167 -9 751 278 15 5 chr12 116694225 116694423 -27092032 + MIR SINE MIR 62 261 -1 2098 105 7 3 chr12 116694834 116695128 -27091327 - AluSx SINE Alu -17 295 1 199 229 16 16 chr12 116695427 116695488 -27090967 - MIR SINE MIR -182 80 20 243 0 0 0 chr12 116695635 116695662 -27090793 + (TG)n Simple_repeat Simple_repeat 2 28 0 232 170 21 0 chr12 116695674 116695721 -27090734 - L1ME LINE L1 -195 5926 5879 234 0 0 0 chr12 116695879 116695905 -27090550 + (CA)n Simple_repeat Simple_repeat 2 27 0 673 283 74 4 chr12 116696035 116696265 -27090190 - MIR SINE MIR -14 248 3 444 276 16 16 chr12 116696615 116696738 -27089717 - MIR3 SINE MIR -8 200 78 254 281 58 50 chr12 116696778 116696917 -27089538 + MIR3 SINE MIR 3 142 -66 387 284 158 16 chr12 116696990 116697180 -27089275 - MER46C DNA MER2_type 0 338 122 2064 135 0 0 chr12 116697206 116697510 -27088945 - AluJb SINE Alu -8 304 1 244 257 178 20 chr12 116697583 116697684 -27088771 - MIR SINE MIR -109 153 37 1897 134 16 10 chr12 116698276 116698582 -27087873 - AluJo SINE Alu 0 312 5 265 271 52 21 chr12 116698793 116698889 -27087566 - L2 LINE L2 -4 3268 3170 390 225 90 20 chr12 116698943 116699114 -27087341 - MIR3 SINE MIR -62 146 1 271 243 0 14 chr12 116699222 116699296 -27087159 + MIR SINE MIR 78 150 -58 407 296 8 16 chr12 116699358 116699483 -27086972 + MIR SINE MIR 28 151 -111 1823 132 7 7 chr12 116699513 116699822 -27086633 + AluJb SINE Alu 1 309 0 335 271 178 0 chr12 116699860 116699978 -27086477 - MIR SINE MIR -97 165 27 339 131 238 12 chr12 116700429 116700513 -27085942 - MIR SINE MIR -120 142 40 232 225 28 42 chr12 116700803 116700874 -27085581 + MIR SINE MIR 74 143 -65 236 159 0 0 chr12 116700967 116701011 -27085444 - Charlie8 DNA MER1_type -989 1428 1385 346 279 48 48 chr12 116701050 116701197 -27085258 - Charlie8 DNA MER1_type -2209 208 62 618 250 85 0 chr12 116702076 116702269 -27084186 + MIR SINE MIR 15 225 -37 240 387 16 8 chr12 116702303 116702427 -27084028 - L2 LINE L2 -23 3249 3125 237 276 52 131 chr12 116702509 116702890 -27083565 + L2 LINE L2 2922 3272 0 302 310 228 5 chr12 116703336 116703533 -27082922 - MIR SINE MIR 0 262 22 * 395 280 68 40 chr12 116703532 116703749 -27082706 - MIR SINE MIR -12 250 6 327 305 73 34 chr12 116704116 116704293 -27082162 - MIR SINE MIR -64 198 15 202 304 182 77 chr12 116704468 116704715 -27081740 - L2 LINE L2 -94 3178 2906 1651 145 3 50 chr12 116705064 116705367 -27081088 - AluJo SINE Alu -23 289 1 1486 198 117 36 chr12 116705461 116705881 -27080574 - MLT1C LTR MaLR -13 454 1 894 148 0 0 chr12 116705891 116706026 -27080429 + AluJ SINE Alu 1 135 -177 1642 173 0 29 chr12 116706026 116706333 -27080122 + AluJb SINE Alu 1 298 -14 197 274 16 16 chr12 116707090 116707152 -27079303 + MIR SINE MIR 89 150 -58 357 324 98 12 chr12 116707200 116707373 -27079082 - MIR SINE MIR -65 197 10 1863 150 10 0 chr12 116707402 116707696 -27078759 - AluJb SINE Alu -12 300 4 182 270 67 22 chr12 116708007 116708096 -27078359 - MIR SINE MIR -69 139 47 * 341 278 90 23 chr12 116708075 116708208 -27078247 + MIR SINE MIR 11 152 -110 735 168 77 14 chr12 116708278 116708421 -27078034 + AluJ SINE Alu 140 291 -21 257 258 0 0 chr12 116708512 116708578 -27077877 - MIR3 SINE MIR -32 176 111 280 185 247 0 chr12 116709686 116709767 -27076688 + MIR SINE MIR 63 163 -99 2046 118 3 10 chr12 116709877 116709894 -27076561 - AluSx SINE Alu -16 296 280 393 22 0 0 chr12 116709894 116709940 -27076515 + (TG)n Simple_repeat Simple_repeat 1 46 0 2046 118 3 10 chr12 116709940 116710219 -27076236 - AluSx SINE Alu -32 280 2 1820 142 6 32 chr12 116710222 116710538 -27075917 - AluJo SINE Alu -4 308 1 330 336 64 14 chr12 116710546 116710686 -27075769 - MIR SINE MIR -81 181 35 282 250 87 32 chr12 116711054 116711183 -27075272 + MIR3 SINE MIR 42 179 -29 183 265 41 0 chr12 116711511 116711560 -27074895 + MIR SINE MIR 90 140 -68 743 305 109 23 chr12 116711699 116712174 -27074281 - LTR33 LTR ERVL -5 516 1 257 316 120 0 chr12 116712660 116712777 -27073678 - L2 LINE L2 -6 3266 3136 195 129 0 0 chr12 116713342 116713373 -27073082 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1041 126 0 6 chr12 116713642 116713801 -27072654 - FRAM SINE Alu -10 166 9 510 205 57 0 chr12 116714305 116714427 -27072028 - MIR3 SINE MIR -2 206 78 577 217 0 0 chr12 116715102 116715208 -27071247 + Charlie1a DNA MER1_type 1 106 -1349 463 258 0 10 chr12 116715197 116715294 -27071161 - 5S rRNA rRNA -25 96 1 * 4922 176 57 18 chr12 116715292 116715503 -27070952 + Charlie1a DNA MER1_type 87 288 -2473 2181 113 3 0 chr12 116715503 116715803 -27070652 + AluSx SINE Alu 3 303 -9 4922 176 57 18 chr12 116715803 116716661 -27069794 + Charlie1a DNA MER1_type 288 1198 -257 180 256 0 0 chr12 116716667 116716706 -27069749 - MIR SINE MIR -115 147 109 194 130 93 37 chr12 116716712 116716766 -27069689 + MIR SINE MIR 79 135 -127 504 258 66 24 chr12 116717451 116717618 -27068837 - MIR SINE MIR -60 202 29 1017 196 0 0 chr12 116717910 116718127 -27068328 - AluJb SINE Alu 0 350 134 1805 145 17 10 chr12 116718127 116718423 -27068032 - AluSx SINE Alu -14 298 1 2088 130 3 3 chr12 116718434 116718742 -27067713 - AluSx SINE Alu -4 308 1 673 276 68 43 chr12 116718844 116719170 -27067285 - MER115 DNA AcHobo -237 456 123 525 175 0 0 chr12 116719653 116719756 -27066699 + (TG)n Simple_repeat Simple_repeat 1 103 0 281 304 98 9 chr12 116721098 116721210 -27065245 - MIR SINE MIR -92 170 49 232 200 66 10 chr12 116721252 116721324 -27065131 - MIR SINE MIR -28 180 101 296 295 24 33 chr12 116721813 116722001 -27064454 + MIR SINE MIR 69 256 -6 200 139 0 23 chr12 116722009 116722052 -27064403 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 208 213 0 133 chr12 116722171 116722221 -27064234 + L2 LINE L2 3205 3243 -29 2164 107 30 0 chr12 116722221 116722519 -27063936 - AluSx SINE Alu -5 307 1 208 213 0 133 chr12 116722519 116722543 -27063912 + L2 LINE L2 3243 3269 -3 374 248 24 32 chr12 116722684 116722809 -27063646 + MIR SINE MIR 17 140 -68 502 185 26 13 chr12 116723691 116723842 -27062613 + CT-rich Low_complexity Low_complexity 1 153 0 1257 188 15 26 chr12 116723844 116724292 -27062163 - AluJo SINE Alu 0 312 40 278 389 83 25 chr12 116724296 116724656 -27061799 + L2 LINE L2 2886 3266 -6 2315 188 60 17 chr12 116724898 116725056 -27061399 - L1MB8 LINE L1 -9 6169 6019 315 0 0 0 chr12 116725056 116725091 -27061364 + (CA)n Simple_repeat Simple_repeat 1 35 0 2315 188 60 17 chr12 116725091 116725464 -27060991 - L1MB8 LINE L1 -159 6019 5615 1008 105 49 12 chr12 116725471 116725633 -27060822 - FAM SINE Alu -2 47 1 235 325 60 26 chr12 116725809 116725926 -27060529 + MIR SINE MIR 71 191 -71 188 314 65 16 chr12 116726708 116726832 -27059623 + MIR SINE MIR 17 146 -62 382 281 110 24 chr12 116726892 116727056 -27059399 + MIR SINE MIR 77 254 -8 200 348 76 8 chr12 116727902 116728020 -27058435 + L2 LINE L2 3132 3257 -15 279 79 0 0 chr12 116728038 116728076 -27058379 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 2186 101 20 0 chr12 116728182 116728488 -27057967 + AluSx SINE Alu 1 312 0 246 105 0 0 chr12 116728513 116728551 -27057904 + (TG)n Simple_repeat Simple_repeat 1 38 0 1784 216 57 7 chr12 116728552 116728992 -27057463 + MLT1C LTR MaLR 6 467 0 1170 128 0 16 chr12 116729154 116729516 -27056939 + (CCA)n Simple_repeat Simple_repeat 1 356 0 1233 134 0 0 chr12 116729553 116730104 -27056351 + (CCA)n Simple_repeat Simple_repeat 1 551 0 225 152 0 43 chr12 116729916 116730140 -27056315 + (CACCAT)n Simple_repeat Simple_repeat 4 47 0 1251 142 2 3 chr12 116730144 116730975 -27055480 + (CCA)n Simple_repeat Simple_repeat 1 1010 0 653 201 0 24 chr12 116730988 116731234 -27055221 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 212 375 42 0 chr12 116731536 116731704 -27054751 - L2 LINE L2 -583 2731 2557 2042 211 29 9 chr12 116731776 116732222 -27054233 - MLT1C LTR MaLR -7 460 6 203 278 19 0 chr12 116732306 116732360 -27054095 - L2 LINE L2 -88 3225 3171 325 255 159 57 chr12 116733048 116733205 -27053250 - MIR SINE MIR -55 207 35 1183 175 0 18 chr12 116733251 116733480 -27052975 + AluJo SINE Alu 87 311 -1 511 274 132 24 chr12 116733771 116733983 -27052472 - L2 LINE L2 -19 3253 3019 236 255 92 10 chr12 116733988 116734086 -27052369 + L2 LINE L2 3202 3307 -6 2250 139 30 11 chr12 116734090 116734458 -27051997 + THE1C LTR MaLR 1 375 0 388 260 31 39 chr12 116734601 116734728 -27051727 + MIR SINE MIR 20 145 -117 1896 141 0 46 chr12 116734755 116735082 -27051373 - AluJo SINE Alu 0 312 1 237 276 41 20 chr12 116735090 116735188 -27051267 - L1MC5 LINE L1 -30 7931 7832 575 229 239 10 chr12 116735204 116735405 -27051050 - HsTC2 DNA Tc2 -1651 247 1 311 0 26 0 chr12 116735494 116735533 -27050922 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1966 143 3 0 chr12 116735606 116735907 -27050548 + AluSx SINE Alu 1 302 -10 186 224 121 0 chr12 116735932 116735990 -27050465 - L2 LINE L2 -240 3073 3009 3959 95 9 11 chr12 116736240 116736789 -27049666 - L1PB3 LINE L1 -2 6152 5605 1779 126 0 4 chr12 116736789 116737050 -27049405 - AluSx SINE Alu -9 303 44 393 49 88 0 chr12 116737050 116737152 -27049303 + (TA)n Simple_repeat Simple_repeat 1 111 0 1668 167 7 10 chr12 116737152 116737446 -27049009 - AluJo SINE Alu -19 293 1 1252 283 113 19 chr12 116737540 116738215 -27048240 + L2 LINE L2 2153 2890 -424 872 138 0 31 chr12 116738248 116738378 -27048077 + FLAM_C SINE Alu 1 126 -7 1619 168 26 10 chr12 116738390 116738700 -27047755 - L1MB7 LINE L1 -19 6165 5851 1405 195 17 20 chr12 116738700 116738997 -27047458 + AluJo SINE Alu 3 298 -14 215 297 62 0 chr12 116739081 116739145 -27047310 + L2 LINE L2 3233 3300 -13 198 0 0 0 chr12 116739146 116739168 -27047287 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 306 256 11 124 chr12 116739740 116739917 -27046538 - MIR SINE MIR -62 146 5 268 379 6 12 chr12 116739928 116740097 -27046358 + MER5A DNA MER1_type 18 185 -4 328 293 27 37 chr12 116739945 116740096 -27046359 - MER5B DNA MER1_type -23 163 19 338 374 16 16 chr12 116740572 116740754 -27045701 + MIR SINE MIR 77 258 -4 529 320 85 3 chr12 116740896 116741281 -27045174 - LTR16C LTR ERVL -17 474 43 2025 183 20 3 chr12 116741302 116741689 -27044766 + MLT1B LTR MaLR 1 396 0 607 301 136 42 chr12 116741700 116742128 -27044327 + L2 LINE L2 2827 3294 -19 202 143 122 0 chr12 116742235 116742284 -27044171 + L2 LINE L2 3258 3312 -1 185 343 15 0 chr12 116742668 116742732 -27043723 - MIR SINE MIR -36 226 162 474 328 38 16 chr12 116742732 116742915 -27043540 + MIR SINE MIR 2 188 -74 2044 129 3 7 chr12 116744159 116744462 -27041993 + AluSx SINE Alu 1 302 -10 1677 177 0 3 chr12 116744467 116744767 -27041688 + AluJb SINE Alu 3 301 -11 688 229 100 0 chr12 116744795 116744965 -27041490 + MIR SINE MIR 76 262 0 190 286 38 57 chr12 116745060 116745165 -27041290 - L2 LINE L2 -336 2977 2875 316 263 42 11 chr12 116745171 116745266 -27041189 + MIR SINE MIR 110 207 -55 1664 201 0 0 chr12 116745278 116745587 -27040868 + AluJo SINE Alu 1 309 -3 275 179 348 0 chr12 116746120 116746232 -27040223 - MIR3 SINE MIR -20 188 38 1868 113 3 38 chr12 116746253 116746589 -27039866 + AluSx SINE Alu 1 326 0 509 232 40 0 chr12 116746687 116746812 -27039643 + MIR SINE MIR 20 149 -113 747 267 96 33 chr12 116747299 116747539 -27038916 + MIR SINE MIR 6 260 -2 413 254 58 29 chr12 116748316 116748460 -27037995 + MIR SINE MIR 16 164 -96 3158 177 85 3 chr12 116748460 116749035 -27037420 - LTR26E LTR ERV1 0 622 1 413 254 58 29 chr12 116749035 116749072 -27037383 + MIR SINE MIR 164 198 -62 249 264 0 47 chr12 116749231 116749337 -27037118 - MIR SINE MIR -73 135 35 217 321 187 13 chr12 116749663 116749847 -27036608 - MIR SINE MIR -9 253 34 2179 103 0 3 chr12 116750050 116750351 -27036104 - AluSx SINE Alu -12 300 1 239 241 181 43 chr12 116750752 116750890 -27035565 + MIR3 SINE MIR 15 167 -65 187 283 0 0 chr12 116750904 116750950 -27035505 + L2 LINE L2 3216 3261 -11 305 308 112 14 chr12 116750963 116751106 -27035349 + MER5A DNA MER1_type 1 157 -32 * 322 213 131 57 chr12 116751000 116751122 -27035333 - MER5A DNA MER1_type -27 162 32 1625 107 171 8 chr12 116751293 116751545 -27034910 + AluSg SINE Alu 1 293 -7 765 316 97 15 chr12 116752105 116752652 -27033803 - L2 LINE L2 -59 3254 2664 449 315 33 11 chr12 116752864 116753045 -27033410 - MIR SINE MIR -67 195 11 339 121 0 0 chr12 116753561 116753619 -27032836 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 282 43 30 chr12 116754130 116754243 -27032212 - MIR SINE MIR -63 145 41 465 287 8 8 chr12 116754244 116754366 -27032089 - MLT1G LTR MaLR -61 529 408 1825 169 13 0 chr12 116754378 116754685 -27031770 + AluJb SINE Alu 2 312 0 540 279 39 44 chr12 116754734 116754938 -27031517 - MLT1G LTR MaLR -195 395 193 306 277 73 117 chr12 116754996 116755047 -27031408 - HAL1b LINE L1 0 1348 1296 1942 138 3 3 chr12 116755047 116755343 -27031112 + AluSq SINE Alu 1 296 -17 306 277 73 117 chr12 116755343 116755497 -27030958 - HAL1b LINE L1 -52 1296 1152 1774 116 4 14 chr12 116755555 116755831 -27030624 + AluSx SINE Alu 38 310 -2 498 282 0 4 chr12 116756250 116756524 -27029931 + (CTA)n Simple_repeat Simple_repeat 1 272 0 237 331 0 0 chr12 116756526 116756671 -27029784 + (CCA)n Simple_repeat Simple_repeat 1 145 0 733 281 6 0 chr12 116756725 116756903 -27029552 + (CTA)n Simple_repeat Simple_repeat 2 180 0 261 331 0 0 chr12 116756906 116757081 -27029374 + (CCA)n Simple_repeat Simple_repeat 1 175 0 514 274 2 6 chr12 116757084 116757517 -27028938 + (CTA)n Simple_repeat Simple_repeat 1 431 0 237 243 0 0 chr12 116757552 116757622 -27028833 + (CTA)n Simple_repeat Simple_repeat 2 71 0 481 234 7 7 chr12 116757642 116757796 -27028659 + (CTA)n Simple_repeat Simple_repeat 2 155 0 954 89 0 182 chr12 116757909 116758145 -27028310 - 7SK RNA RNA 0 193 1 488 249 71 114 chr12 116758307 116758728 -27027727 + L2 LINE L2 2870 3272 0 215 286 0 0 chr12 116758737 116758786 -27027669 - L2 LINE L2 -217 3055 3007 551 293 99 19 chr12 116759416 116759740 -27026715 + L1MC4a LINE L1 5716 6065 -1743 1375 178 0 0 chr12 116759814 116760039 -27026416 - AluJo SINE Alu -1 311 87 308 253 25 25 chr12 116760097 116760176 -27026279 + HAL1b LINE L1 1268 1346 -2 2198 87 58 0 chr12 116760186 116760461 -27025994 - AluSx SINE Alu -21 291 1 1682 188 33 0 chr12 116760616 116760736 -27025719 + AluJo SINE Alu 1 116 -196 207 0 0 0 chr12 116760736 116760759 -27025696 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1682 188 33 0 chr12 116760759 116760914 -27025541 + AluJo SINE Alu 116 285 -27 345 47 0 0 chr12 116760914 116760957 -27025498 + (GA)n Simple_repeat Simple_repeat 2 44 0 609 264 119 60 chr12 116761257 116761493 -27024962 + MLT1K LTR MaLR 17 238 -350 2419 93 0 7 chr12 116761493 116761803 -27024652 - AluSg SINE Alu -2 308 1 609 264 119 60 chr12 116761803 116762083 -27024372 + MLT1K LTR MaLR 238 588 0 638 53 114 18 chr12 116762250 116762364 -27024091 - L1MA5A LINE L1 -4 6293 6169 427 264 188 41 chr12 116762461 116762658 -27023797 + MIR SINE MIR 4 229 -33 277 374 45 11 chr12 116762902 116763081 -27023374 + L3 LINE CR1 1337 1521 -56 220 35 0 0 chr12 116763098 116763127 -27023328 - L2 LINE L2 0 3272 3244 1305 176 106 22 chr12 116763131 116763404 -27023051 - AluJo SINE Alu -16 296 1 1059 90 0 0 chr12 116763506 116763639 -27022816 + AluJb SINE Alu 1 133 -179 1735 201 10 0 chr12 116763689 116763997 -27022458 + AluJb SINE Alu 1 311 -1 2163 112 7 0 chr12 116764266 116764561 -27021894 + AluSq SINE Alu 1 297 -16 235 294 15 75 chr12 116764943 116765113 -27021342 - MIR SINE MIR -13 249 91 325 249 75 9 chr12 116765173 116765337 -27021118 - MIR SINE MIR -63 145 19 305 310 0 26 chr12 116765778 116765894 -27020561 + C-rich Low_complexity Low_complexity 1 113 0 219 250 33 0 chr12 116766238 116766298 -27020157 - L2 LINE L2 -21 3251 3190 1012 191 51 4 chr12 116766379 116766745 -27019710 + MLT1F LTR MaLR 117 542 0 822 173 0 0 chr12 116766876 116767003 -27019452 + FLAM_C SINE Alu 1 127 -16 240 240 20 10 chr12 116767017 116767117 -27019338 + (TA)n Simple_repeat Simple_repeat 2 102 0 610 271 18 6 chr12 116767167 116767337 -27019118 - MIR SINE MIR -64 198 27 369 281 59 7 chr12 116767359 116767500 -27018955 - MIR3 SINE MIR -71 137 6 253 388 0 12 chr12 116768052 116768217 -27018238 + (CA)n Simple_repeat Simple_repeat 1 163 0 857 281 57 0 chr12 116768270 116768498 -27017957 + MIR SINE MIR 12 252 -10 322 261 94 29 chr12 116768751 116768889 -27017566 + MIR SINE MIR 20 166 -96 347 328 39 28 chr12 116769180 116769360 -27017095 + MIR SINE MIR 80 261 -1 206 381 12 0 chr12 116769361 116769445 -27017010 + MIR3 SINE MIR 123 207 -1 210 250 86 43 chr12 116769604 116769720 -27016735 - MIR SINE MIR -71 137 17 2123 109 0 58 chr12 116769729 116770041 -27016414 - AluSx SINE Alu -18 294 1 358 284 103 24 chr12 116770278 116770412 -27016043 - MIR SINE MIR -63 145 1 473 289 47 57 chr12 116771046 116771149 -27015306 + MIR SINE MIR 41 143 -119 1831 155 23 13 chr12 116771149 116771458 -27014997 + AluJo SINE Alu 1 312 0 473 289 47 57 chr12 116771458 116771565 -27014890 + MIR SINE MIR 143 249 -13 487 331 33 6 chr12 116771831 116772012 -27014443 - MIR SINE MIR -7 255 70 206 195 24 0 chr12 116772137 116772178 -27014277 - MIR3 SINE MIR -53 155 114 220 284 291 15 chr12 116772800 116772934 -27013521 - MIR SINE MIR -3 259 89 281 337 0 0 chr12 116773442 116773531 -27012924 - MIR3 SINE MIR -46 162 74 249 262 95 0 chr12 116773579 116773663 -27012792 + MER91C DNA MER1_type 2 93 -47 505 289 156 5 chr12 116774144 116774362 -27012093 - MIR SINE MIR -6 256 6 352 330 23 23 chr12 116774536 116774749 -27011706 - MIR3 SINE MIR -42 220 8 1799 158 44 14 chr12 116775166 116775463 -27010992 + AluSx SINE Alu 1 306 -6 513 223 79 7 chr12 116775654 116775793 -27010662 - MIR SINE MIR -51 211 63 1544 148 65 55 chr12 116775869 116776194 -27010261 - AluJo SINE Alu 0 312 1 26 0 0 0 chr12 116776201 116776227 -27010228 + AT_rich Low_complexity Low_complexity 1 26 0 2296 159 37 29 chr12 116776247 116776737 -27009718 - L1MC3 LINE L1 -15 7770 7277 1915 118 30 4 chr12 116776737 116776999 -27009456 + AluSg SINE Alu 1 269 -41 180 0 0 0 chr12 116777084 116777104 -27009351 + (A)n Simple_repeat Simple_repeat 1 20 0 459 158 0 0 chr12 116777108 116777190 -27009265 - L1MC3 LINE L1 -499 7286 7205 551 172 0 10 chr12 116777190 116777289 -27009166 - AluJb SINE Alu -58 254 157 380 256 0 0 chr12 116777326 116777416 -27009039 - MLT1F1 LTR MaLR -442 125 36 657 158 45 0 chr12 116777417 116777550 -27008905 - L1MC3 LINE L1 -688 7097 6959 1494 175 29 54 chr12 116777741 116778055 -27008400 - AluJb SINE Alu -6 306 1 624 231 6 0 chr12 116778295 116778676 -27007779 + (TGGA)n Simple_repeat Simple_repeat 1 383 0 1990 132 0 65 chr12 116778721 116779046 -27007409 - AluSx SINE Alu -8 304 1 578 229 112 23 chr12 116779167 116779381 -27007074 - MIR SINE MIR 0 262 35 2101 125 3 37 chr12 116779656 116780038 -27006417 - AluSx SINE Alu 0 373 3 565 282 43 27 chr12 116781107 116781295 -27005160 + MIR SINE MIR 17 207 -55 1948 153 7 0 chr12 116781791 116782079 -27004376 + AluJo SINE Alu 1 290 -22 432 205 79 24 chr12 116782161 116782288 -27004167 - MIR SINE MIR -109 153 20 368 288 31 74 chr12 116782340 116782503 -27003952 + MER91A DNA MER1_type 1 156 -40 1770 151 0 75 chr12 116782629 116782974 -27003481 - AluJb SINE Alu 0 312 1 261 278 24 63 chr12 116783732 116783858 -27002597 + MIR3 SINE MIR 1 121 -87 3178 171 25 90 chr12 116783956 116784049 -27002406 + MER63C DNA MER1_type 32 129 -931 2054 129 7 23 chr12 116784049 116784352 -27002103 - AluJb SINE Alu -14 298 1 3178 171 25 90 chr12 116784352 116784717 -27001738 + MER63C DNA MER1_type 129 516 -544 1773 160 27 17 chr12 116784717 116785017 -27001438 + AluJo SINE Alu 1 303 -9 3178 171 25 90 chr12 116785017 116785065 -27001390 + MER63C DNA MER1_type 516 566 -494 2374 104 0 0 chr12 116785065 116785372 -27001083 - AluY SINE Alu -4 307 1 2207 125 0 20 chr12 116785372 116785675 -27000780 - AluSx SINE Alu -15 297 1 3178 171 25 90 chr12 116785675 116786030 -27000425 + MER63C DNA MER1_type 564 840 -90 238 306 24 12 chr12 116786060 116786145 -27000310 + MER21B LTR ERV1 24 109 -754 2168 113 3 27 chr12 116786154 116786454 -27000001 - AluSq SINE Alu -20 293 1 1915 178 0 0 chr12 116786456 116786742 -26999713 - AluJb SINE Alu -22 290 5 1334 257 110 48 chr12 116786795 116787359 -26999096 + MER21B LTR ERV1 141 739 -124 316 243 0 14 chr12 116787364 116787434 -26999021 + MER63C DNA MER1_type 845 913 -17 305 244 105 0 chr12 116787528 116787614 -26998841 - L2 LINE L2 -6 3307 3213 604 299 96 17 chr12 116787700 116788059 -26998396 + LTR16A1 LTR ERVL 73 463 -28 196 167 28 0 chr12 116788062 116788098 -26998357 - L2 LINE L2 -90 3182 3146 * 329 346 73 35 chr12 116788066 116788355 -26998100 - L2 LINE L2 -94 3219 2920 347 348 14 18 chr12 116788589 116788810 -26997645 + L1MC4a LINE L1 5667 5886 -1922 199 278 56 0 chr12 116788911 116788965 -26997490 + L2 LINE L2 3251 3307 -6 243 0 0 0 chr12 116788972 116788999 -26997456 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 602 201 0 6 chr12 116789097 116789234 -26997221 - L1ME1 LINE L1 0 6178 6041 1928 130 10 47 chr12 116789558 116789858 -26996597 + AluJb SINE Alu 1 289 -23 2235 106 10 10 chr12 116789862 116789997 -26996458 + AluSx SINE Alu 1 135 -177 2442 68 0 7 chr12 116789997 116790315 -26996140 + AluY SINE Alu 1 311 0 2235 106 10 10 chr12 116790315 116790480 -26995975 + AluSx SINE Alu 134 301 -11 195 190 0 0 chr12 116791493 116791551 -26994904 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 565 295 35 20 chr12 116791588 116791788 -26994667 + MIR SINE MIR 15 217 -45 183 42 0 0 chr12 116791849 116791873 -26994582 + (TTG)n Simple_repeat Simple_repeat 2 25 0 407 197 103 42 chr12 116792001 116792181 -26994274 + MIR SINE MIR 36 250 -12 2049 155 0 22 chr12 116792395 116792712 -26993743 - AluSx SINE Alu -2 310 1 434 352 58 25 chr12 116793144 116793471 -26992984 - L2 LINE L2 -2 3270 2933 2005 146 17 0 chr12 116793546 116793847 -26992608 + AluJb SINE Alu 1 306 -6 328 223 32 32 chr12 116793907 116794001 -26992454 - MIR SINE MIR -88 174 81 2235 113 0 7 chr12 116794040 116794340 -26992115 - AluSx SINE Alu -14 298 1 826 176 0 40 chr12 116794340 116794488 -26991967 - AluJo SINE Alu -170 142 1 314 200 0 0 chr12 116794541 116794596 -26991859 + MIR SINE MIR 91 145 -63 299 246 107 33 chr12 116795099 116795212 -26991243 + MIR SINE MIR 92 216 -46 2230 118 0 0 chr12 116795212 116795508 -26990947 - AluSx SINE Alu -16 296 1 685 235 18 18 chr12 116795520 116795686 -26990769 - MIR SINE MIR -15 247 82 197 313 16 0 chr12 116796550 116796614 -26989841 + MIR SINE MIR 77 141 -67 966 131 0 21 chr12 116796745 116796890 -26989565 + FLAM_C SINE Alu 1 142 -1 183 146 0 49 chr12 116796944 116796985 -26989470 + MIR SINE MIR 109 147 -115 234 139 0 221 chr12 116797392 116797514 -26988941 + MIR3 SINE MIR 64 158 -50 446 325 18 0 chr12 116797517 116797683 -26988772 - MER117 DNA MER1_type 0 197 29 676 253 56 30 chr12 116797827 116798025 -26988430 - MIR SINE MIR -14 248 46 2080 151 0 0 chr12 116798031 116798330 -26988125 + AluSx SINE Alu 1 299 -13 409 226 9 19 chr12 116798450 116798556 -26987899 - MIR SINE MIR -82 180 76 221 287 129 0 chr12 116798606 116798707 -26987748 + L2 LINE L2 3141 3254 -18 2133 126 3 0 chr12 116799078 116799393 -26987062 + AluSq SINE Alu 1 316 0 410 326 62 7 chr12 116799567 116799711 -26986744 + MIR3 SINE MIR 18 169 -39 299 282 39 29 chr12 116799851 116799954 -26986501 - L2 LINE L2 -1 3271 3168 236 248 53 18 chr12 116800142 116800255 -26986200 - L1MC4 LINE L1 -1 8041 7925 319 236 42 0 chr12 116800440 116800512 -26985943 - MLT1J2 LTR MaLR -118 332 258 2213 110 0 3 chr12 116800580 116800881 -26985574 - AluJb SINE Alu -12 300 1 205 250 0 0 chr12 116801133 116801177 -26985278 - L2 LINE L2 -5 3267 3224 439 185 74 28 chr12 116801298 116801406 -26985049 - MIR SINE MIR -79 129 17 448 316 0 0 chr12 116801487 116801626 -26984829 - MIR SINE MIR -48 214 76 289 358 59 15 chr12 116802516 116802720 -26983735 + MIR SINE MIR 47 259 -3 1124 92 7 0 chr12 116802802 116802943 -26983512 - AluSq/x SINE Alu -167 146 5 396 260 39 39 chr12 116802988 116803115 -26983340 - MIR SINE MIR -62 146 20 362 172 0 69 chr12 116803183 116803270 -26983185 - MER117 DNA MER1_type -49 148 68 341 276 29 0 chr12 116803314 116803419 -26983036 + MIR SINE MIR 42 149 -59 977 297 56 39 chr12 116803526 116803672 -26982783 - L2 LINE L2 -1 3312 3170 2389 79 22 32 chr12 116803672 116803987 -26982468 + AluSx SINE Alu 1 312 0 977 297 56 39 chr12 116803987 116804308 -26982147 - L2 LINE L2 -143 3170 2837 569 310 129 16 chr12 116804765 116805075 -26981380 + L2 LINE L2 2928 3272 0 2000 152 3 3 chr12 116805147 116805449 -26981006 + AluJo SINE Alu 11 312 0 257 217 0 17 chr12 116805541 116805601 -26980854 - MIR SINE MIR -112 150 92 809 346 96 0 chr12 116805705 116806101 -26980354 - L2 LINE L2 -4 3268 2835 246 236 0 0 chr12 116806450 116806505 -26979950 - MIR3 SINE MIR -2 206 152 237 226 151 11 chr12 116806508 116806601 -26979854 - MER5B DNA MER1_type -4 174 69 322 227 11 34 chr12 116806601 116806689 -26979766 - MIR3 SINE MIR -53 155 70 * 450 284 136 15 chr12 116806683 116806887 -26979568 + MIR SINE MIR 8 239 -23 672 257 68 10 chr12 116807473 116807679 -26978776 - MIR SINE MIR -12 250 33 316 319 22 29 chr12 116807966 116808104 -26978351 + MIR SINE MIR 113 249 -13 282 149 45 30 chr12 116808169 116808236 -26978219 + MIR SINE MIR 96 163 -99 401 133 67 0 chr12 116808239 116808314 -26978141 + MIR SINE MIR 120 199 -63 281 261 11 43 chr12 116808358 116808450 -26978005 + MIR SINE MIR 162 250 -12 23 0 0 0 chr12 116808733 116808756 -26977699 + GC_rich Low_complexity Low_complexity 1 23 0 38 107 0 0 chr12 116808854 116809004 -26977451 + GC_rich Low_complexity Low_complexity 1 150 0 21 95 0 0 chr12 116809445 116809508 -26976947 + GC_rich Low_complexity Low_complexity 1 63 0 24 32 0 0 chr12 116809599 116809630 -26976825 + GC_rich Low_complexity Low_complexity 1 31 0 351 344 113 11 chr12 116811820 116812006 -26974449 - MIR SINE MIR -44 218 14 215 326 101 16 chr12 116812383 116812512 -26973943 - L2 LINE L2 -189 3083 2944 580 298 110 14 chr12 116812896 116813114 -26973341 + MIR SINE MIR 15 253 -9 22 0 0 0 chr12 116813656 116813678 -26972777 + GC_rich Low_complexity Low_complexity 1 22 0 271 291 111 8 chr12 116813977 116814094 -26972361 - MIR3 SINE MIR -65 143 15 345 250 36 54 chr12 116814170 116814282 -26972173 - MIR SINE MIR -87 175 66 337 233 80 62 chr12 116814849 116815034 -26971421 + MIR SINE MIR 21 212 -50 233 317 37 24 chr12 116815600 116815682 -26970773 - L2 LINE L2 -1 3271 3189 305 325 69 25 chr12 116815796 116815956 -26970499 - L2 LINE L2 -36 3236 3070 274 297 81 27 chr12 116816004 116816152 -26970303 - MIR SINE MIR -27 235 80 467 228 95 53 chr12 116816357 116816546 -26969909 - MER117 DNA MER1_type 0 197 1 407 335 46 28 chr12 116816748 116816966 -26969489 - MIR SINE MIR -1 261 40 277 363 33 23 chr12 116817001 116817216 -26969239 - L2 LINE L2 -214 3058 2842 284 203 0 62 chr12 116817383 116817447 -26969008 + L2 LINE L2 3254 3313 0 210 380 8 23 chr12 116819096 116819225 -26967230 + L2 LINE L2 2868 2994 -278 379 270 40 16 chr12 116819544 116819670 -26966785 + MIR SINE MIR 19 147 -115 222 128 0 0 chr12 116819786 116819825 -26966630 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 473 236 0 69 chr12 116819946 116820090 -26966365 - MIR SINE MIR -109 153 20 257 304 22 0 chr12 116820067 116820159 -26966296 - MIR3 SINE MIR -47 161 68 * 460 304 56 31 chr12 116820151 116820387 -26966068 - MIR SINE MIR 0 262 19 198 0 0 0 chr12 116821077 116821099 -26965356 + (A)n Simple_repeat Simple_repeat 1 22 0 198 287 21 59 chr12 116821101 116821258 -26965197 + MIR3 SINE MIR 2 151 -111 299 262 95 0 chr12 116821382 116821466 -26964989 - MIR SINE MIR -168 94 3 240 286 107 65 chr12 116821856 116822047 -26964408 - MIR SINE MIR -62 146 5 222 291 0 0 chr12 116822548 116822603 -26963852 - MIR SINE MIR -114 148 94 255 290 46 53 chr12 116822936 116823067 -26963388 + MIR SINE MIR 101 230 -32 224 338 20 54 chr12 116823227 116823375 -26963080 - MIR3 SINE MIR -63 145 3 205 175 95 48 chr12 116823632 116823695 -26962760 + L2 LINE L2 3187 3252 -20 442 273 123 26 chr12 116824827 116824981 -26961474 - MIR SINE MIR -85 177 9 446 216 26 35 chr12 116825174 116825290 -26961165 + MIR SINE MIR 35 149 -113 190 269 46 56 chr12 116825773 116825881 -26960574 + MIR SINE MIR 30 136 -72 497 317 16 44 chr12 116825895 116826078 -26960377 - MIR SINE MIR -37 225 48 215 291 155 10 chr12 116826891 116826994 -26959461 + MIR3 SINE MIR 15 132 -76 418 326 89 0 chr12 116827862 116828086 -26958369 - L2 LINE L2 -106 3207 2964 924 167 118 69 chr12 116828109 116828363 -26958092 + MER33 DNA MER1_type 23 294 -2291 2387 54 0 10 chr12 116828363 116828661 -26957794 - AluY SINE Alu -16 295 1 924 167 118 69 chr12 116828661 116828694 -26957761 + MER33 DNA MER1_type 294 324 0 403 322 90 33 chr12 116828698 116828893 -26957562 - L2 LINE L2 -343 2971 2789 1847 155 17 0 chr12 116828893 116829184 -26957271 + AluJo SINE Alu 6 301 -11 403 322 90 33 chr12 116829184 116829354 -26957101 - L2 LINE L2 -525 2789 2585 198 103 0 0 chr12 116829555 116829584 -26956871 + (A)n Simple_repeat Simple_repeat 1 29 0 245 164 68 14 chr12 116829586 116829659 -26956796 - L1ME4a LINE L1 -16 6105 6029 195 299 65 13 chr12 116829666 116829743 -26956712 - MIR SINE MIR -173 89 9 249 350 164 11 chr12 116830239 116830416 -26956039 + MIR SINE MIR 59 262 0 185 306 119 8 chr12 116830542 116830676 -26955779 + L2 LINE L2 2921 3069 -244 320 207 92 23 chr12 116831341 116831428 -26955027 - MIR SINE MIR -57 151 59 220 163 0 102 chr12 116831602 116831651 -26954804 + L2 LINE L2 3247 3290 -23 260 283 23 35 chr12 116832919 116833065 -26953390 + GA-rich Low_complexity Low_complexity 1 144 0 313 288 30 15 chr12 116833748 116833880 -26952575 - MIR3 SINE MIR -1 207 74 252 293 12 49 chr12 116834342 116834424 -26952031 + L2 LINE L2 3194 3272 0 350 248 19 29 chr12 116834724 116834829 -26951626 + MIR SINE MIR 42 145 -117 275 318 12 0 chr12 116835556 116835641 -26950814 + MIR SINE MIR 59 144 -64 382 330 194 13 chr12 116835659 116836035 -26950420 - L2 LINE L2 -3 3269 2826 205 321 0 0 chr12 116837528 116837584 -26948871 + CT-rich Low_complexity Low_complexity 2 57 0 186 340 175 0 chr12 116838841 116838938 -26947517 + MIR SINE MIR 40 153 -55 438 244 64 47 chr12 116839736 116839908 -26946547 + Charlie8 DNA MER1_type 91 265 -2152 22 35 0 0 chr12 116839973 116840002 -26946453 + AT_rich Low_complexity Low_complexity 1 29 0 803 320 104 5 chr12 116840180 116840620 -26945835 - L1MC4a LINE L1 -1896 6148 5665 183 42 0 0 chr12 116840620 116840644 -26945811 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 686 181 0 0 chr12 116840647 116840763 -26945692 - FLAM_C SINE Alu -27 116 1 263 295 96 25 chr12 116840794 116841150 -26945305 - L1MC4a LINE L1 -743 5639 5259 2200 113 0 0 chr12 116841164 116841465 -26944990 + AluSx SINE Alu 1 301 -11 879 155 132 9 chr12 116841578 116841791 -26944664 - L1MB8 LINE L1 -8 6170 5932 288 143 89 0 chr12 116841793 116841849 -26944606 - L1MB3 LINE L1 -290 5893 5833 989 141 197 5 chr12 116841854 116842052 -26944403 - MER46A DNA MER2_type 0 236 1 2086 116 7 3 chr12 116842058 116842352 -26944103 - AluSx SINE Alu -17 295 1 442 321 126 34 chr12 116842353 116843864 -26942591 - L1MC4a LINE L1 -1399 4983 3335 407 322 175 47 chr12 116843870 116844046 -26942409 - L1MC4a LINE L1 -3078 3304 3152 2158 106 3 0 chr12 116844046 116844363 -26942092 - AluSp SINE Alu 0 318 1 407 322 175 47 chr12 116844363 116844606 -26941849 - L1MC4a LINE L1 -3230 3152 2829 233 213 63 47 chr12 116844925 116845052 -26941403 - L1MC4a LINE L1 -3924 2460 2332 573 117 0 0 chr12 116845346 116845423 -26941032 + AluJ/FLAM SINE Alu 6 82 -230 710 307 102 23 chr12 116845588 116845979 -26940476 - HAL1b LINE L1 -679 669 248 309 353 69 50 chr12 116846087 116846447 -26940008 - L1M2 LINE L1 -4738 2111 1745 412 259 6 26 chr12 116846856 116847011 -26939444 - L1MC/D LINE L1 -392 5771 5668 332 304 18 18 chr12 116847546 116847658 -26938797 + MIR3 SINE MIR 87 198 -10 242 247 104 0 chr12 116848225 116848302 -26938153 + MIR SINE MIR 79 163 -99 264 279 88 57 chr12 116848325 116848486 -26937969 + MIR SINE MIR 21 183 -25 308 279 81 44 chr12 116849099 116849235 -26937220 + L1M4 LINE L1 4067 4207 -1939 437 112 303 0 chr12 116849260 116849349 -26937106 + FLAM_A SINE Alu 24 139 -3 963 205 44 0 chr12 116849413 116849618 -26936837 - MER58A DNA MER1_type 0 224 11 1807 170 3 13 chr12 116849622 116849928 -26936527 - AluJb SINE Alu -9 303 1 4837 238 98 19 chr12 116849928 116850257 -26936198 - L1 LINE L1 -818 5328 5026 2284 79 3 49 chr12 116850257 116850585 -26935870 - AluSp SINE Alu 0 313 1 4837 238 98 19 chr12 116850585 116852061 -26934394 - L1 LINE L1 -1120 5026 3382 344 270 292 13 chr12 116852129 116852362 -26934093 + L1M4 LINE L1 4490 4787 -1359 349 327 35 0 chr12 116852409 116852611 -26933844 + L1M4 LINE L1 4915 5123 -1023 313 338 74 7 chr12 116854082 116854230 -26932225 + MIR SINE MIR 31 188 -74 460 296 90 1 chr12 116855974 116856183 -26930272 - MIR SINE MIR -34 174 1 278 338 73 23 chr12 116856728 116857077 -26929378 + L2 LINE L2 2657 3067 -246 415 260 22 76 chr12 116857266 116857457 -26928998 - MLT1G3 LTR MaLR -293 284 78 256 334 118 9 chr12 116858129 116858258 -26928197 + MIR SINE MIR 5 146 -70 2203 202 60 49 chr12 116858259 116858793 -26927662 - MLT1F LTR MaLR 0 542 3 1818 138 30 0 chr12 116858926 116859195 -26927260 + AluJb SINE Alu 22 298 -14 729 227 22 16 chr12 116860136 116860321 -26926134 - MER20 DNA MER1_type 0 219 34 229 325 105 31 chr12 116860361 116860589 -26925866 + L2 LINE L2 2820 3064 -208 281 279 27 45 chr12 116860886 116860997 -26925458 - MIR SINE MIR -67 195 87 213 251 50 0 chr12 116861090 116861161 -26925294 - MIR SINE MIR -61 147 86 189 278 122 22 chr12 116861507 116861597 -26924858 - MIR SINE MIR -60 202 104 565 310 9 13 chr12 116861623 116861819 -26924636 + L1PA8A LINE L1 5460 5658 -473 1285 183 0 51 chr12 116861850 116862107 -26924348 - AluJo SINE Alu -9 303 60 1161 273 73 3 chr12 116862248 116862633 -26923822 + L1ME3A LINE L1 5759 6170 0 683 165 159 47 chr12 116864712 116864882 -26921573 + MER91B DNA MER1_type 2 190 0 331 322 187 0 chr12 116865790 116865961 -26920494 - MIR SINE MIR -9 253 51 184 200 36 18 chr12 116866234 116866289 -26920166 - MIR SINE MIR -63 145 90 213 213 0 0 chr12 116866485 116866532 -26919923 - MIR SINE MIR -93 169 123 242 230 162 0 chr12 116867197 116867271 -26919184 + MIR3 SINE MIR 109 194 -14 331 224 15 90 chr12 116867462 116867596 -26918859 - MIR SINE MIR -63 145 22 288 298 12 0 chr12 116868443 116868527 -26917928 + MIR3 SINE MIR 71 155 -53 242 133 83 17 chr12 116868668 116868728 -26917727 + MIR SINE MIR 83 146 -62 1735 157 11 3 chr12 116868736 116869023 -26917432 + AluJo SINE Alu 5 293 -19 480 187 42 90 chr12 116869188 116869310 -26917145 - MER103 DNA DNA -1 165 52 1785 116 0 12 chr12 116869310 116869561 -26916894 - AluSx SINE Alu -64 248 1 480 187 42 90 chr12 116869561 116869604 -26916851 - MER103 DNA DNA -114 52 8 226 211 0 6 chr12 116869698 116869761 -26916694 + MIR SINE MIR 92 132 -76 * 229 226 57 0 chr12 116869747 116869800 -26916655 - MIR SINE MIR -114 94 39 340 213 106 0 chr12 116869918 116870003 -26916452 - MIR SINE MIR -61 147 73 307 283 11 11 chr12 116870545 116870637 -26915818 + MIR SINE MIR 62 153 -109 1185 252 126 40 chr12 116870644 116871073 -26915382 - MLT1L LTR MaLR 0 615 150 466 260 63 0 chr12 116872122 116872249 -26914206 + MIR SINE MIR 23 157 -105 207 0 0 0 chr12 116872336 116872359 -26914096 + (CA)n Simple_repeat Simple_repeat 2 24 0 376 285 69 15 chr12 116872469 116872599 -26913856 - MLT1L LTR MaLR -358 191 55 191 346 115 0 chr12 116872654 116872758 -26913697 + L3 LINE CR1 1418 1533 -44 1043 210 106 84 chr12 116872759 116872996 -26913459 + MER113 DNA MER1_type? 2 232 -289 2128 116 0 28 chr12 116872996 116873316 -26913139 - AluSx SINE Alu -1 311 1 1043 210 106 84 chr12 116873316 116873587 -26912868 + MER113 DNA MER1_type? 232 521 0 1137 144 0 11 chr12 116873787 116873975 -26912480 + AluSg/x SINE Alu 119 304 -6 360 277 223 9 chr12 116874155 116874375 -26912080 + MLT1L LTR MaLR 1 267 -348 381 255 83 13 chr12 116874568 116874725 -26911730 + MLT1L LTR MaLR 442 609 -6 1678 119 46 69 chr12 116874812 116875115 -26911340 - AluSx SINE Alu -16 296 1 252 287 63 9 chr12 116875166 116875280 -26911175 - MIR SINE MIR -63 145 30 2296 103 0 3 chr12 116875285 116875595 -26910860 - AluSq SINE Alu -4 309 1 274 254 0 16 chr12 116876312 116876375 -26910080 - MIR SINE MIR -55 153 92 2644 68 51 23 chr12 116876713 116877067 -26909388 + THE1B LTR MaLR 1 364 0 180 77 0 0 chr12 116877635 116877661 -26908794 + (CCA)n Simple_repeat Simple_repeat 2 27 0 180 172 0 0 chr12 116878581 116878610 -26907845 - L2 LINE L2 -22 3291 3263 286 331 83 14 chr12 116878612 116878757 -26907698 - MIR SINE MIR -87 175 21 201 288 34 0 chr12 116878945 116879004 -26907451 - MIR SINE MIR -58 150 90 772 136 19 93 chr12 116879262 116879292 -26907163 - L1MB4 LINE L1 0 6180 6149 2021 106 10 45 chr12 116879292 116879604 -26906851 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr12 116879605 116879633 -26906822 + (TG)n Simple_repeat Simple_repeat 2 29 0 772 136 19 93 chr12 116879633 116879762 -26906693 - L1MB4 LINE L1 -30 6150 6031 1559 159 59 24 chr12 116879762 116880052 -26906403 - AluJb SINE Alu -12 300 1 247 170 0 0 chr12 116880055 116880102 -26906353 - L1MB4 LINE L1 -369 5805 5759 28 61 0 0 chr12 116880102 116880151 -26906304 + AT_rich Low_complexity Low_complexity 1 49 0 759 115 25 8 chr12 116880163 116880285 -26906170 - AluSc SINE Alu -12 297 174 1607 126 115 4 chr12 116880595 116880864 -26905591 + AluJo SINE Alu 1 299 -13 327 137 0 0 chr12 116880886 116880937 -26905518 - MIR SINE MIR -92 170 120 439 289 42 21 chr12 116881266 116881408 -26905047 - MIR SINE MIR -33 229 85 288 247 35 12 chr12 116881816 116881901 -26904554 - Charlie8 DNA MER1_type 0 2417 2331 744 238 32 11 chr12 116881936 116882125 -26904330 - Charlie8 DNA MER1_type -2138 279 87 1649 150 4 0 chr12 116882168 116882422 -26904033 + AluJb SINE Alu 2 256 -56 1130 156 0 0 chr12 116883798 116883978 -26902477 - 7SLRNA srpRNA srpRNA -1 319 140 1093 150 43 0 chr12 116884016 116884203 -26902252 + MER20 DNA MER1_type 24 218 -1 339 223 97 10 chr12 116884372 116884475 -26901980 - MER117 DNA MER1_type -38 159 48 609 284 5 30 chr12 116884561 116884758 -26901697 + MER117 DNA MER1_type 1 192 -5 1347 232 93 69 chr12 116885375 116885445 -26901010 + MLT1H LTR MaLR 35 102 -447 915 130 8 0 chr12 116885445 116885576 -26900879 + FLAM_C SINE Alu 1 132 -1 1347 232 93 69 chr12 116885576 116885945 -26900510 + MLT1H LTR MaLR 102 490 -59 2033 130 7 0 chr12 116885945 116886245 -26900210 + AluSx SINE Alu 1 302 -10 1347 232 93 69 chr12 116886245 116886299 -26900156 + MLT1H LTR MaLR 490 541 -8 2132 108 0 7 chr12 116886324 116886629 -26899826 - AluSx SINE Alu -9 303 1 511 242 85 18 chr12 116886630 116886795 -26899660 + MIR SINE MIR 70 245 -17 2010 109 9 47 chr12 116886795 116887115 -26899340 + AluSq SINE Alu 1 308 -5 513 296 48 0 chr12 116887979 116888165 -26898290 - MER117 DNA MER1_type -2 195 1 192 77 0 0 chr12 116888488 116888514 -26897941 + (GGAGA)n Simple_repeat Simple_repeat 5 30 0 345 327 0 32 chr12 116888584 116888740 -26897715 + GA-rich Low_complexity Low_complexity 2 152 0 188 239 22 0 chr12 116889530 116889576 -26896879 - L3 LINE CR1 -2 1575 1529 2154 117 0 0 chr12 116889582 116889881 -26896574 + AluSq SINE Alu 1 299 -14 236 223 289 16 chr12 116890067 116890188 -26896267 - MER117 DNA MER1_type -42 155 2 220 277 109 8 chr12 116890208 116890327 -26896128 - MIR3 SINE MIR -63 145 15 327 322 140 28 chr12 116890430 116890573 -26895882 + L1ME4a LINE L1 5726 5884 -237 1703 143 3 41 chr12 116890584 116890905 -26895550 - AluJb SINE Alu 0 310 1 692 288 90 5 chr12 116890947 116891169 -26895286 - MIR SINE MIR 0 262 22 215 239 44 0 chr12 116891925 116891996 -26894459 - MIR SINE MIR -69 139 74 2199 92 0 7 chr12 116892006 116892300 -26894155 - AluSx SINE Alu -20 292 1 925 181 0 0 chr12 116892312 116892467 -26893988 - AluJb SINE Alu -24 288 134 366 158 0 0 chr12 116892592 116892649 -26893806 - FLAM_A SINE Alu -59 73 17 636 265 50 15 chr12 116892656 116892856 -26893599 - MIR SINE MIR -23 239 33 957 195 38 14 chr12 116892869 116893079 -26893376 + MER20 DNA MER1_type 4 218 -1 2283 87 13 0 chr12 116893997 116894295 -26892160 - AluSx SINE Alu -10 302 1 261 343 0 13 chr12 116894501 116894595 -26891860 - MIR SINE MIR -62 146 52 1789 168 3 16 chr12 116894595 116894774 -26891681 - AluJo SINE Alu 0 312 132 270 0 0 0 chr12 116894774 116894804 -26891651 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1998 101 7 14 chr12 116894804 116895091 -26891364 - AluSx SINE Alu -27 285 1 1789 168 3 16 chr12 116895091 116895226 -26891229 - AluJo SINE Alu -178 134 1 261 343 0 13 chr12 116895226 116895262 -26891193 - MIR SINE MIR -156 52 35 759 169 31 0 chr12 116895881 116896011 -26890444 + AluJo SINE Alu 2 135 -177 1613 179 3 23 chr12 116896011 116896109 -26890346 + AluJo SINE Alu 1 99 -213 2785 98 3 8 chr12 116896109 116896486 -26889969 + THE1C LTR MaLR 1 375 0 1613 179 3 23 chr12 116896486 116896688 -26889767 + AluJo SINE Alu 99 295 -17 1841 138 0 60 chr12 116896974 116897139 -26889316 - AluJb SINE Alu -11 301 163 2258 107 3 0 chr12 116897139 116897447 -26889008 - AluSq SINE Alu -4 309 1 1841 138 0 60 chr12 116897447 116897599 -26888856 - AluJb SINE Alu -149 163 3 444 51 0 0 chr12 116897656 116897715 -26888740 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1685 170 0 37 chr12 116898281 116898604 -26887851 - AluJo SINE Alu -1 311 1 487 254 22 14 chr12 116898626 116898764 -26887691 + MER103 DNA DNA 2 140 -26 396 239 101 67 chr12 116898841 116899050 -26887405 - MER113 DNA MER1_type? 0 521 306 219 293 17 0 chr12 116899215 116899273 -26887182 + MIR SINE MIR 32 90 -172 221 274 65 0 chr12 116899462 116899524 -26886931 + MIR SINE MIR 37 102 -106 648 316 22 78 chr12 116899745 116900103 -26886352 + L2 LINE L2 2930 3267 -5 257 287 46 35 chr12 116900502 116900589 -26885866 - MER69A DNA AcHobo -88 89 2 2052 114 0 32 chr12 116901042 116901350 -26885105 - AluSx SINE Alu -14 298 1 761 176 8 0 chr12 116901785 116901910 -26884545 - FLAM_A SINE Alu -3 130 5 1417 177 7 70 chr12 116902081 116902215 -26884240 + AluJb SINE Alu 1 107 -205 2143 94 17 10 chr12 116902215 116902514 -26883941 + AluSq SINE Alu 1 301 -12 1417 177 7 70 chr12 116902514 116902678 -26883777 + AluJb SINE Alu 107 280 -32 2203 100 3 7 chr12 116903644 116903943 -26882512 + AluSx SINE Alu 1 298 -14 2019 126 7 0 chr12 116904768 116905061 -26881394 - AluSq SINE Alu -18 295 1 201 254 0 17 chr12 116905228 116905287 -26881168 + A-rich Low_complexity Low_complexity 4 61 0 1403 159 112 18 chr12 116906627 116906732 -26879723 + AluJo SINE Alu 1 95 -217 464 0 0 18 chr12 116906732 116906789 -26879666 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1403 159 112 18 chr12 116906789 116906960 -26879495 + AluJo SINE Alu 95 303 -9 307 344 104 0 chr12 116906971 116907125 -26879330 - MIR3 SINE MIR -3 205 36 357 278 127 22 chr12 116907153 116907339 -26879116 + MARNA DNA Mariner 332 531 -55 512 147 0 0 chr12 116907657 116907988 -26878467 + AluSq SINE Alu 2 332 0 2082 134 13 0 chr12 116908581 116908879 -26877576 - AluSq SINE Alu -11 302 1 2113 129 7 3 chr12 116908881 116909183 -26877272 - AluJb SINE Alu -9 303 1 1854 156 3 23 chr12 116909385 116909692 -26876763 - AluSx SINE Alu -11 301 1 1517 188 10 27 chr12 116910395 116910693 -26875762 - AluSx SINE Alu -19 293 1 1809 140 41 51 chr12 116910724 116911039 -26875416 - AluJb SINE Alu 0 312 1 1051 166 18 0 chr12 116911088 116911257 -26875198 + FAM SINE Alu 4 175 0 2091 129 3 0 chr12 116912916 116913203 -26873252 + AluSx SINE Alu 5 292 -20 235 192 0 0 chr12 116917712 116917764 -26868691 - L2 LINE L2 -18 3295 3244 192 97 0 0 chr12 116918680 116918711 -26867744 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 472 258 186 8 chr12 116918731 116918995 -26867460 - L2 LINE L2 -44 3269 2959 186 205 0 0 chr12 116919897 116919936 -26866519 + L2 LINE L2 3233 3271 -1 1625 189 6 25 chr12 116920398 116920715 -26865740 + AluJo SINE Alu 1 311 -1 2451 58 34 0 chr12 116921086 116921380 -26865075 + AluY SINE Alu 1 304 -7 2059 129 7 0 chr12 116921676 116921956 -26864499 + AluSx SINE Alu 1 282 -30 1677 115 105 7 chr12 116922056 116922342 -26864113 + MSTB1 LTR MaLR 119 432 0 2283 61 0 0 chr12 116922376 116922639 -26863816 - AluY SINE Alu -15 296 34 261 253 25 13 chr12 116922720 116922799 -26863656 - L1ME LINE L1 -449 5672 5593 2401 95 0 0 chr12 116922816 116923110 -26863345 - AluY SINE Alu -17 294 1 2190 112 3 10 chr12 116923115 116923410 -26863045 - AluSx SINE Alu -19 293 1 2450 90 0 0 chr12 116923924 116924234 -26862221 - AluSx SINE Alu -2 310 1 859 139 7 0 chr12 116924458 116924595 -26861860 + L1PA8A LINE L1 5994 6131 0 1531 106 173 12 chr12 116925208 116925462 -26860993 + AluSg SINE Alu 1 295 -5 537 291 110 57 chr12 116925479 116926005 -26860450 - L1MC4a LINE L1 -341 5780 5284 2114 144 0 0 chr12 116926937 116927243 -26859212 + AluJb SINE Alu 1 306 -6 184 409 0 11 chr12 116927573 116927666 -26858789 + L2 LINE L2 3161 3252 -20 958 174 0 24 chr12 116927722 116927889 -26858566 + AluJb SINE Alu 137 299 -13 535 228 136 5 chr12 116928268 116928452 -26858003 - MIR SINE MIR -1 261 54 249 243 0 0 chr12 116928532 116928602 -26857853 + GA-rich Low_complexity Low_complexity 4 73 0 21 0 0 0 chr12 116928984 116929005 -26857450 + AT_rich Low_complexity Low_complexity 1 21 0 504 0 0 0 chr12 116929533 116929589 -26856866 + (CA)n Simple_repeat Simple_repeat 2 57 0 468 125 0 0 chr12 116930831 116930903 -26855552 + AluS SINE Alu 2 73 -237 1042 92 0 0 chr12 116930907 116931038 -26855417 - AluSg/x SINE Alu -11 301 171 425 174 0 0 chr12 116931141 116931210 -26855245 + FLAM SINE Alu 51 119 -24 261 57 0 0 chr12 116931210 116931245 -26855210 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1295 211 42 17 chr12 116931415 116931704 -26854751 + MER58B DNA MER1_type 42 341 0 1288 216 121 30 chr12 116932575 116932973 -26853482 - L1ME LINE L1 -452 5714 5281 2283 98 0 3 chr12 116932991 116933286 -26853169 - AluSp SINE Alu -19 294 1 1877 144 0 17 chr12 116933288 116933587 -26852868 - AluSx SINE Alu -18 294 1 693 194 9 57 chr12 116933587 116933720 -26852735 - L1ME LINE L1 -856 5290 5169 2257 119 7 3 chr12 116933720 116934030 -26852425 - AluSp SINE Alu -2 311 1 693 194 9 57 chr12 116934030 116934107 -26852348 - L1ME LINE L1 -977 5169 5090 927 173 7 7 chr12 116934128 116934278 -26852177 - FRAM SINE Alu -30 146 1 654 156 0 0 chr12 116934309 116934418 -26852037 - AluSg/x SINE Alu -2 308 200 1549 173 20 4 chr12 116934518 116934767 -26851688 - AluJb SINE Alu -59 253 1 688 194 118 46 chr12 116934767 116935004 -26851451 - L1ME LINE L1 -1489 4657 4404 2118 108 7 10 chr12 116935010 116935305 -26851150 - AluSx SINE Alu -18 294 1 256 228 53 0 chr12 116935305 116935362 -26851093 - L1ME LINE L1 -2300 3846 3787 1787 173 7 23 chr12 116935364 116935670 -26850785 - AluJo SINE Alu -11 301 1 219 69 0 0 chr12 116935672 116935701 -26850754 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2163 117 0 0 chr12 116935701 116935983 -26850472 - AluSx SINE Alu -30 282 1 4105 207 41 83 chr12 116935985 116936302 -26850153 - L1MDa LINE L1 -2811 3729 3400 2115 128 0 0 chr12 116936302 116936590 -26849865 + AluSx SINE Alu 1 288 -24 4105 207 41 83 chr12 116936590 116936787 -26849668 - L1MDa LINE L1 -3140 3400 3196 2227 107 3 0 chr12 116936787 116937077 -26849378 + AluSx SINE Alu 1 291 -21 4105 207 41 83 chr12 116937077 116937747 -26848708 - L1MDa LINE L1 -3344 3196 2499 1514 184 10 42 chr12 116937747 116938056 -26848399 - AluJo SINE Alu -13 299 1 4105 207 41 83 chr12 116938056 116938314 -26848141 - L1MDa LINE L1 -4041 2499 2232 2273 101 7 3 chr12 116938314 116938610 -26847845 - AluSc SINE Alu -12 297 1 4105 207 41 83 chr12 116938610 116938648 -26847807 - L1MDa LINE L1 -4308 2232 2194 264 30 0 0 chr12 116938648 116938681 -26847774 + (CA)n Simple_repeat Simple_repeat 2 34 0 4105 207 41 83 chr12 116938681 116938826 -26847629 - L1MDa LINE L1 -4346 2194 2044 2617 53 0 0 chr12 116938826 116939125 -26847330 - AluY SINE Alu -11 300 2 2267 112 7 0 chr12 116939126 116939431 -26847024 - AluSx SINE Alu -5 307 1 4105 207 41 83 chr12 116939431 116939786 -26846669 - L1MDa LINE L1 -4496 2044 1676 1851 153 35 0 chr12 116939786 116940074 -26846381 + AluJb SINE Alu 6 303 -9 2184 110 0 0 chr12 116940084 116940375 -26846080 + AluSg SINE Alu 1 291 -19 4105 207 41 83 chr12 116940375 116940620 -26845835 - L1MDa LINE L1 -4873 1667 1413 2280 121 0 0 chr12 116940620 116940925 -26845530 - AluSx SINE Alu -7 305 1 4105 207 41 83 chr12 116940925 116941513 -26844942 - L1MDa LINE L1 -5127 1413 1002 2366 84 10 3 chr12 116941815 116942114 -26844341 - AluY SINE Alu -9 302 2 257 325 26 9 chr12 116942249 116942363 -26844092 - L1MDa LINE L1 -5949 581 466 865 171 17 51 chr12 116942440 116942615 -26843840 - MER58A DNA MER1_type 0 224 56 1431 166 41 51 chr12 116942615 116942910 -26843545 - AluJo SINE Alu -19 293 2 354 143 0 0 chr12 116942916 116943002 -26843453 - Alu SINE Alu 0 320 235 332 286 0 0 chr12 116943002 116943072 -26843383 - MER58A DNA MER1_type -37 70 1 272 280 25 62 chr12 116943927 116944095 -26842360 - MER5A DNA MER1_type -30 148 2 465 83 0 0 chr12 116944371 116944431 -26842024 - MADE1 DNA Mariner -20 60 1 356 245 0 43 chr12 116944499 116944593 -26841862 + MER104 DNA Tc2 11 100 -80 211 376 35 0 chr12 116944724 116944897 -26841558 + L2 LINE L2 2842 3020 -252 25 31 0 0 chr12 116945213 116945245 -26841210 + AT_rich Low_complexity Low_complexity 1 32 0 2111 130 3 19 chr12 116945255 116945562 -26840893 - AluSx SINE Alu -10 302 1 211 261 80 57 chr12 116946501 116946589 -26839866 - MIR SINE MIR -119 143 54 239 246 70 0 chr12 116946720 116946777 -26839678 + AluSp SINE Alu 108 168 -135 1463 139 9 5 chr12 116947033 116947256 -26839199 + AluJb SINE Alu 86 309 -3 2299 90 20 0 chr12 116947260 116947559 -26838896 + AluSx SINE Alu 1 305 -7 228 265 98 10 chr12 116948762 116948864 -26837591 + MER113 DNA MER1_type? 1 111 -410 2392 77 7 7 chr12 116949715 116950013 -26836442 + AluSx SINE Alu 1 298 -14 2485 95 0 0 chr12 116950828 116951134 -26835321 - AluSx SINE Alu -6 306 1 2186 99 3 3 chr12 116951352 116951659 -26834796 - AluSx SINE Alu 0 307 1 330 242 233 23 chr12 116952136 116952351 -26834104 + MIR SINE MIR 2 261 -1 198 0 0 0 chr12 116952763 116952785 -26833670 + (A)n Simple_repeat Simple_repeat 1 22 0 224 248 107 40 chr12 116954138 116954287 -26832168 - MIR SINE MIR -69 193 35 207 222 37 0 chr12 116954626 116954680 -26831775 + G-rich Low_complexity Low_complexity 3 58 0 482 270 66 7 chr12 116955324 116955476 -26830979 - L2 LINE L2 0 3313 3153 2114 94 11 11 chr12 116955483 116955617 -26830838 + AluSx SINE Alu 1 134 -178 2503 63 17 0 chr12 116955617 116955917 -26830538 + AluSg SINE Alu 1 305 -5 2114 94 11 11 chr12 116955917 116956069 -26830386 + AluSx SINE Alu 133 287 -25 395 255 0 20 chr12 116956175 116956273 -26830182 + MER58C DNA MER1_type 34 129 -86 239 333 103 0 chr12 116956636 116956753 -26829702 - L2 LINE L2 -5 3308 3180 746 165 149 26 chr12 116957431 116957625 -26828830 + MER20 DNA MER1_type 2 219 0 22 35 0 0 chr12 116958153 116958182 -26828273 + GC_rich Low_complexity Low_complexity 1 29 0 589 309 87 0 chr12 116958611 116958841 -26827614 - MIR SINE MIR 0 262 13 351 220 23 0 chr12 116958912 116959005 -26827450 + MIR SINE MIR 53 153 -55 320 256 36 58 chr12 116958983 116959120 -26827335 - MER5B DNA MER1_type -42 136 3 * 953 167 31 45 chr12 116959203 116959425 -26827030 + MER20 DNA MER1_type 1 219 0 2574 77 3 0 chr12 116959432 116959744 -26826711 - AluSp SINE Alu 0 313 1 1896 134 68 0 chr12 116960115 116960407 -26826048 - AluSx SINE Alu 0 312 1 658 117 0 0 chr12 116960668 116960762 -26825693 - AluJ/FLAM SINE Alu -213 99 6 2301 96 3 10 chr12 116961024 116961327 -26825128 + AluSx SINE Alu 3 303 -9 455 161 0 23 chr12 116962469 116962556 -26823899 + FLAM_A SINE Alu 41 125 -17 2173 129 0 3 chr12 116962564 116962859 -26823596 + AluSg SINE Alu 1 294 -16 2317 68 3 52 chr12 116963021 116963329 -26823126 + AluSp SINE Alu 1 293 -20 338 264 113 38 chr12 116963483 116963642 -26822813 - MIR SINE MIR -1 261 91 4416 135 33 66 chr12 116963695 116963827 -26822628 - L1MB7 LINE L1 0 6184 6049 1523 181 84 11 chr12 116963827 116964114 -26822341 - AluJo SINE Alu 0 312 5 4416 135 33 66 chr12 116964114 116964512 -26821943 - L1MB7 LINE L1 -135 6049 5640 2292 103 10 0 chr12 116964512 116964804 -26821651 - AluSx SINE Alu -17 295 1 4416 135 33 66 chr12 116964804 116965284 -26821171 - L1MB7 LINE L1 -544 5640 5207 2350 101 3 0 chr12 116965285 116965583 -26820872 - AluSp SINE Alu -14 299 1 5865 192 54 32 chr12 116965585 116966051 -26820404 - L1MB7 LINE L1 -1191 4955 4501 2404 89 3 16 chr12 116966051 116966367 -26820088 - AluSp SINE Alu -1 312 1 5865 192 54 32 chr12 116966367 116967292 -26819163 - L1MB7 LINE L1 -1645 4501 3526 2149 132 0 0 chr12 116967292 116967581 -26818874 + AluSx SINE Alu 3 291 -21 5865 192 54 32 chr12 116967581 116967676 -26818779 - L1MB7 LINE L1 -2620 3526 3435 1883 96 0 29 chr12 116967799 116968079 -26818376 - AluY SINE Alu -39 272 1 2046 129 0 14 chr12 116968094 116968381 -26818074 - AluSx SINE Alu -29 283 1 312 277 8 34 chr12 116968968 116969087 -26817368 + L3b LINE CR1 1217 1332 -251 1469 157 0 25 chr12 116969088 116969323 -26817132 + AluJb SINE Alu 1 229 -83 2506 90 0 0 chr12 116969323 116969633 -26816822 + AluY SINE Alu 1 311 0 420 222 0 0 chr12 116969633 116969714 -26816741 + AluJb SINE Alu 219 299 -13 2221 118 3 3 chr12 116969950 116970255 -26816200 + AluSx SINE Alu 1 305 -7 2007 129 0 57 chr12 116970321 116970639 -26815816 + AluJo SINE Alu 1 300 -12 2043 159 13 0 chr12 116970889 116971191 -26815264 + 7SLRNA srpRNA srpRNA 1 306 -14 235 225 14 0 chr12 116971263 116971334 -26815121 - L1M LINE L1 -855 5329 5258 743 134 0 8 chr12 116971664 116971783 -26814672 + FLAM_C SINE Alu 1 118 -15 1881 112 0 4 chr12 116971812 116972054 -26814401 - AluSx SINE Alu -71 241 1 1088 109 7 0 chr12 116972387 116972574 -26813881 + AluSg/x SINE Alu 135 322 0 203 279 173 10 chr12 116972708 116972812 -26813643 + MIR SINE MIR 9 129 -133 237 174 228 0 chr12 116972933 116973006 -26813449 - MIR SINE MIR -77 131 45 215 361 31 10 chr12 116973649 116973746 -26812709 - MIR SINE MIR -53 209 111 204 40 0 0 chr12 116973885 116973910 -26812545 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 198 227 147 13 chr12 116973938 116974013 -26812442 - L2 LINE L2 -41 3231 3147 2436 98 0 0 chr12 116974322 116974629 -26811826 - AluSq SINE Alu -6 307 1 1105 197 16 0 chr12 116974633 116974821 -26811634 - AluJo SINE Alu -14 298 108 249 239 239 9 chr12 116974835 116974944 -26811511 + MER102a DNA MER1_type 197 330 0 442 320 60 30 chr12 116975590 116975640 -26810815 - MIR SINE MIR -16 246 199 2317 100 3 0 chr12 116975640 116975931 -26810524 - AluSg SINE Alu -18 292 1 442 320 60 30 chr12 116975931 116976114 -26810341 - MIR SINE MIR -63 199 6 836 208 0 0 chr12 116976758 116976902 -26809553 + FRAM SINE Alu 2 145 -31 2252 96 14 0 chr12 116977121 116977412 -26809043 + AluSp SINE Alu 1 295 -18 230 62 0 0 chr12 116977466 116977498 -26808957 + MADE1 DNA Mariner 49 80 0 593 121 139 36 chr12 116977691 116977856 -26808599 - Tigger3(Golem) DNA MER2_type -567 2462 2281 2319 93 3 0 chr12 116977871 116978161 -26808294 - AluSx SINE Alu -21 291 1 1091 158 0 23 chr12 116978175 116978352 -26808103 + FRAM SINE Alu 1 168 -8 743 217 12 6 chr12 116979138 116979304 -26807151 - MIR SINE MIR -62 200 34 513 234 117 18 chr12 116979432 116979603 -26806852 + MIR SINE MIR 75 262 0 238 364 86 0 chr12 116980078 116980229 -26806226 - MIR SINE MIR -19 243 80 * 281 246 108 85 chr12 116980218 116980348 -26806107 + MER91B DNA MER1_type 7 139 -51 1646 142 29 0 chr12 116980350 116980589 -26805866 - AluSx SINE Alu -10 302 57 203 224 119 45 chr12 116980598 116980665 -26805790 + MER91A DNA MER1_type 114 185 -11 291 289 53 0 chr12 116981278 116981392 -26805063 - L2 LINE L2 -5 3267 3148 284 315 0 11 chr12 116982752 116982841 -26803614 - MIR SINE MIR -76 186 99 410 252 59 0 chr12 116982865 116983000 -26803455 + MIR SINE MIR 107 249 -13 2241 109 0 26 chr12 116983012 116983323 -26803132 - AluJb SINE Alu -9 303 1 1808 206 80 54 chr12 116983323 116983582 -26802873 - L1MC4 LINE L1 -1026 7016 6765 2454 100 0 0 chr12 116983582 116983892 -26802563 - AluSg SINE Alu 0 310 1 1808 206 80 54 chr12 116983892 116984027 -26802428 - L1MC4 LINE L1 -1277 6765 6635 2256 96 38 0 chr12 116984027 116984320 -26802135 + AluSc SINE Alu 1 304 -5 1808 206 80 54 chr12 116984320 116984465 -26801990 - L1MC4 LINE L1 -1407 6635 6459 1984 166 0 0 chr12 116984657 116984959 -26801496 - AluJo SINE Alu -10 302 1 288 216 108 0 chr12 116985596 116985670 -26800785 + MIR SINE MIR 48 129 -133 636 193 133 171 chr12 116985677 116985800 -26800655 - MLT1D LTR MaLR -41 464 338 1022 240 124 0 chr12 116985800 116986067 -26800388 + AluJo SINE Alu 2 301 -1 2408 63 18 0 chr12 116986077 116986362 -26800093 + AluY SINE Alu 1 290 -21 636 193 133 171 chr12 116986362 116986491 -26799964 - MLT1D LTR MaLR -176 329 173 344 300 29 36 chr12 116986491 116986631 -26799824 + MIR SINE MIR 123 261 -1 1250 132 14 38 chr12 116987151 116987364 -26799091 + AluJo SINE Alu 84 291 -21 2296 125 0 0 chr12 116987382 116987694 -26798761 - AluSx SINE Alu 0 312 1 1930 130 6 48 chr12 116988270 116988585 -26797870 - AluSx SINE Alu -10 302 1 1645 128 8 23 chr12 116988591 116988848 -26797607 - AluSq SINE Alu -15 298 46 1413 133 0 0 chr12 116988891 116989079 -26797376 + AluSg/x SINE Alu 102 289 -21 373 269 192 11 chr12 116989141 116989323 -26797132 - L2 LINE L2 -202 3070 2856 220 326 92 0 chr12 116989846 116989944 -26796511 + MIR3 SINE MIR 62 168 -40 2300 106 3 3 chr12 116989981 116990282 -26796173 + AluSq SINE Alu 1 301 -12 3938 164 55 29 chr12 116990357 116990785 -26795670 + MER54A LTR ERVL 78 493 -408 2157 138 0 3 chr12 116990785 116991083 -26795372 + AluSx SINE Alu 1 297 -15 2238 74 0 18 chr12 116991083 116991367 -26795088 + AluY SINE Alu 24 302 -9 2472 88 3 0 chr12 116991367 116991672 -26794783 + AluSp SINE Alu 1 306 -7 3938 164 55 29 chr12 116991672 116992044 -26794411 + MER54A LTR ERVL 492 901 0 1412 176 42 70 chr12 116992089 116992402 -26794053 - AluJo SINE Alu -8 304 1 2284 114 0 0 chr12 116992840 116993130 -26793325 - AluSx SINE Alu -22 290 1 631 250 87 0 chr12 116993220 116993404 -26793051 + MIR SINE MIR 57 256 -6 257 229 156 42 chr12 116993496 116993523 -26792932 - L2 LINE L2 -1 3312 3289 1932 114 39 25 chr12 116993523 116993803 -26792652 + AluSx SINE Alu 1 284 -28 233 70 47 0 chr12 116993803 116993846 -26792609 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 257 229 156 42 chr12 116993846 116993913 -26792542 - L2 LINE L2 -23 3290 3206 401 363 26 11 chr12 116993923 116994113 -26792342 + MIR SINE MIR 21 213 -49 343 222 0 50 chr12 116994284 116994383 -26792072 - MIR3 SINE MIR -37 171 78 2205 133 10 0 chr12 116994433 116994741 -26791714 - AluSx SINE Alu -1 311 1 2235 112 3 3 chr12 116995088 116995393 -26791062 - AluSx SINE Alu -7 305 1 423 281 83 0 chr12 116995404 116995525 -26790930 - MIR SINE MIR -107 155 25 1044 162 0 0 chr12 116995525 116995679 -26790776 - AluJb SINE Alu -26 286 133 270 56 0 0 chr12 116995679 116995715 -26790740 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2188 119 0 0 chr12 116995716 116996002 -26790453 - AluSx SINE Alu -26 286 1 253 288 12 0 chr12 116996022 116996102 -26790353 + GA-rich Low_complexity Low_complexity 3 83 0 2316 89 3 3 chr12 116996241 116996534 -26789921 + AluSc SINE Alu 1 293 -16 328 270 207 0 chr12 116996562 116996673 -26789782 - MER5B DNA MER1_type 0 178 45 1314 152 18 5 chr12 116996682 116996899 -26789556 - AluJo SINE Alu -12 300 81 211 162 0 0 chr12 116996900 116996937 -26789518 - MER5B DNA MER1_type -141 37 1 27 29 0 0 chr12 116997348 116997382 -26789073 + GC_rich Low_complexity Low_complexity 1 34 0 258 240 133 38 chr12 116997839 116997944 -26788511 + MIR SINE MIR 33 148 -60 223 263 0 105 chr12 116998056 116998151 -26788304 + MIR SINE MIR 21 105 -157 2836 144 39 53 chr12 116998247 116998811 -26787644 + LTR6A LTR ERV1 9 564 0 1916 124 45 0 chr12 116999053 116999344 -26787111 - AluJb SINE Alu -8 304 1 2039 106 0 7 chr12 116999352 116999649 -26786806 - AluSg SINE Alu 0 303 9 398 217 28 105 chr12 116999689 116999832 -26786623 - MER5B DNA MER1_type -45 133 2 284 306 194 35 chr12 117000453 117000623 -26785832 + MIR SINE MIR 8 204 -58 801 131 16 0 chr12 117002761 117002883 -26783572 - FLAM_A SINE Alu -9 124 1 1961 138 7 3 chr12 117003774 117004071 -26782384 - AluJo SINE Alu -14 298 1 198 236 57 104 chr12 117005082 117005188 -26781267 - L2 LINE L2 -8 3264 3164 865 219 105 0 chr12 117005922 117006150 -26780305 + L1MA9 LINE L1 5987 6238 -74 2231 103 0 42 chr12 117006421 117006566 -26779889 + AluSx SINE Alu 1 128 -184 2115 130 7 3 chr12 117006566 117006873 -26779582 + AluSq SINE Alu 1 308 -5 2231 103 0 42 chr12 117006873 117007037 -26779418 + AluSx SINE Alu 128 297 -15 1621 165 83 0 chr12 117007215 117007481 -26778974 - AluJb SINE Alu -24 288 1 249 295 84 0 chr12 117007500 117007595 -26778860 - L1MC/D LINE L1 -2011 5797 5695 1613 179 11 3 chr12 117008213 117008498 -26777957 + AluJb SINE Alu 1 287 -25 350 310 0 0 chr12 117008640 117008727 -26777728 - MIR SINE MIR 0 262 176 2107 123 3 0 chr12 117008962 117009264 -26777191 + AluSx SINE Alu 1 303 -9 195 42 0 0 chr12 117011896 117011920 -26774535 + (GGA)n Simple_repeat Simple_repeat 3 26 0 823 151 0 0 chr12 117013786 117013912 -26772543 + FLAM_A SINE Alu 2 127 -6 1563 183 35 3 chr12 117014733 117015017 -26771438 - AluJb SINE Alu -19 293 1 2079 111 3 10 chr12 117015021 117015328 -26771127 - AluSp SINE Alu -8 305 1 2108 86 7 7 chr12 117015717 117016007 -26770448 + AluSc SINE Alu 1 290 -19 344 310 112 1 chr12 117016499 117016670 -26769785 - L1ME LINE L1 -344 5818 5632 295 337 163 0 chr12 117017139 117017317 -26769138 + L2 LINE L2 2174 2380 -934 285 276 82 15 chr12 117017506 117017640 -26768815 + L2 LINE L2 2664 2806 -508 2310 88 3 0 chr12 117017901 117018207 -26768248 - AluSp SINE Alu -6 307 1 601 257 18 0 chr12 117018207 117018429 -26768026 - L1M4 LINE L1 -2791 3355 3130 2135 91 0 7 chr12 117018677 117018993 -26767462 - AluSx SINE Alu 0 314 1 988 177 0 0 chr12 117019785 117019949 -26766506 + AluJb SINE Alu 137 300 -12 1190 166 0 10 chr12 117020995 117021200 -26765255 + AluJb SINE Alu 88 290 -22 1432 140 24 82 chr12 117022317 117022609 -26763846 + AluJo SINE Alu 1 275 -37 193 73 24 24 chr12 117022612 117022653 -26763802 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2405 75 0 0 chr12 117022957 117023263 -26763192 + AluY SINE Alu 1 306 -5 2260 44 41 17 chr12 117023607 117023902 -26762553 - AluY SINE Alu -9 302 1 1930 117 17 13 chr12 117024378 117024677 -26761778 - AluSx SINE Alu -12 300 1 1839 143 13 0 chr12 117024766 117025074 -26761381 - AluJb SINE Alu 0 312 1 210 167 0 0 chr12 117025085 117025121 -26761334 + T-rich Low_complexity Low_complexity 1 36 0 310 226 158 30 chr12 117025325 117025458 -26760997 - L1ME4a LINE L1 -2 6119 5970 2109 137 0 3 chr12 117025587 117025900 -26760555 - AluSx SINE Alu 0 312 1 966 118 0 0 chr12 117025900 117026036 -26760419 - AluSq/x SINE Alu -176 136 1 301 256 119 50 chr12 117026047 117026207 -26760248 - L1ME4a LINE L1 -1994 5814 5644 2264 75 7 0 chr12 117026478 117026772 -26759683 + AluSx SINE Alu 1 296 -16 261 0 0 0 chr12 117028596 117028625 -26757830 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 319 303 38 45 chr12 117029596 117029728 -26756727 + MIR3 SINE MIR 43 173 -35 2183 113 3 0 chr12 117030241 117030551 -26755904 - AluSx SINE Alu -1 311 1 2286 87 0 0 chr12 117030994 117031292 -26755163 + AluY SINE Alu 1 298 -13 22 0 0 0 chr12 117033227 117033249 -26753206 + AT_rich Low_complexity Low_complexity 1 22 0 2219 103 0 0 chr12 117033900 117034202 -26752253 + AluSx SINE Alu 1 302 -10 2239 98 0 9 chr12 117034776 117035091 -26751364 - AluSx SINE Alu 0 312 1 2110 106 3 13 chr12 117035118 117035420 -26751035 + AluSp SINE Alu 1 299 -14 2176 121 0 0 chr12 117035426 117035732 -26750723 + AluSx SINE Alu 1 306 -6 630 251 38 43 chr12 117035955 117036166 -26750289 + MIR SINE MIR 43 252 -10 349 242 208 17 chr12 117036191 117036311 -26750144 - MIR SINE MIR -112 150 8 206 301 175 18 chr12 117036899 117037065 -26749390 - MIR SINE MIR -51 211 20 2287 73 0 0 chr12 117037573 117037862 -26748593 - AluSg SINE Alu -21 289 1 27 0 0 0 chr12 117037873 117037900 -26748555 + AT_rich Low_complexity Low_complexity 1 27 0 402 253 199 75 chr12 117038936 117038992 -26747463 + MIR SINE MIR 54 102 -160 2260 106 0 0 chr12 117038992 117039293 -26747162 - AluSx SINE Alu -11 301 1 402 253 199 75 chr12 117039293 117039422 -26747033 + MIR SINE MIR 102 262 0 25 75 0 0 chr12 117039586 117039639 -26746816 + AT_rich Low_complexity Low_complexity 1 53 0 2234 72 0 36 chr12 117039639 117039945 -26746510 + AluSp SINE Alu 1 295 -18 685 218 12 36 chr12 117040121 117040184 -26746271 - L1ME1 LINE L1 -5 6161 6098 1777 134 49 0 chr12 117040184 117040468 -26745987 - AluSx SINE Alu -14 298 1 685 218 12 36 chr12 117040468 117040569 -26745886 - L1ME1 LINE L1 -68 6098 6001 1597 205 23 113 chr12 117040573 117041184 -26745271 - L1M4 LINE L1 -1737 4409 3854 862 277 86 29 chr12 117041300 117041719 -26744736 + L1ME3A LINE L1 5504 5946 -224 2439 50 6 28 chr12 117041870 117042187 -26744268 - AluY SINE Alu 0 311 2 21 36 0 0 chr12 117042270 117042298 -26744157 + AT_rich Low_complexity Low_complexity 1 28 0 811 175 36 0 chr12 117043289 117043426 -26743029 - FAM SINE Alu -42 143 2 364 214 153 0 chr12 117043649 117043747 -26742708 - L2 LINE L2 0 3272 3160 1509 185 3 26 chr12 117044149 117044272 -26742183 + AluJo SINE Alu 1 125 -187 1959 145 0 0 chr12 117044272 117044576 -26741879 - AluSx SINE Alu -8 304 1 1509 185 3 26 chr12 117044576 117044755 -26741700 + AluJo SINE Alu 125 296 -16 2294 58 7 10 chr12 117045294 117045588 -26740867 + AluY SINE Alu 1 293 -18 393 313 180 18 chr12 117045910 117046127 -26740328 + MIR SINE MIR 8 259 -3 2450 71 0 0 chr12 117048892 117049203 -26737252 - AluSq SINE Alu -2 311 1 2172 95 0 7 chr12 117049609 117049905 -26736550 + AluSq SINE Alu 1 294 -19 592 302 132 34 chr12 117051335 117051602 -26734853 - L2 LINE L2 0 3313 3074 1826 108 38 70 chr12 117051602 117051918 -26734537 + AluSx SINE Alu 1 306 -6 592 302 132 34 chr12 117051918 117052281 -26734174 - L2 LINE L2 -239 3074 2629 2256 100 0 10 chr12 117052398 117052708 -26733747 + AluSg SINE Alu 1 307 -3 207 69 0 0 chr12 117052844 117052873 -26733582 + (A)n Simple_repeat Simple_repeat 1 29 0 2118 96 20 0 chr12 117053091 117053394 -26733061 + AluSg SINE Alu 1 309 -1 2390 84 3 0 chr12 117053518 117053829 -26732626 + AluSp SINE Alu 1 312 -1 1994 106 24 0 chr12 117054137 117054430 -26732025 + AluSc SINE Alu 1 300 -9 1873 152 0 0 chr12 117054503 117054806 -26731649 + AluSx SINE Alu 1 303 -9 2051 108 0 7 chr12 117054972 117055268 -26731187 + AluSc SINE Alu 1 294 -15 324 203 116 0 chr12 117055294 117055363 -26731092 - MER5C DNA MER1_type 0 324 248 509 191 127 0 chr12 117055467 117055577 -26730878 - MER5C DNA MER1_type -200 124 1 556 255 65 51 chr12 117055585 117055801 -26730654 + MER20 DNA MER1_type 1 219 0 216 338 0 0 chr12 117055807 117055878 -26730577 + MIR SINE MIR 180 250 -12 668 299 5 58 chr12 117056132 117056236 -26730219 + MIR SINE MIR 51 138 -124 1451 129 80 59 chr12 117056236 117056523 -26729932 + AluJo SINE Alu 4 296 -16 668 299 5 58 chr12 117056523 117056642 -26729813 + MIR SINE MIR 138 262 0 1141 84 0 0 chr12 117056823 117056966 -26729489 + AluSg/x SINE Alu 79 221 -91 474 243 25 86 chr12 117057727 117057970 -26728485 + L2 LINE L2 3022 3249 -64 1230 34 54 0 chr12 117057978 117058126 -26728329 + LTR2B LTR ERV1 4 159 -331 1215 184 72 92 chr12 117058155 117058600 -26727855 - LTR7 LTR ERV1 -14 436 1 * 2827 31 0 11 chr12 117058600 117058940 -26727515 + LTR2B LTR ERV1 155 490 0 243 314 171 0 chr12 117058983 117059088 -26727367 - MIR SINE MIR -126 136 14 4403 72 2 2 chr12 117059170 117059723 -26726732 + MER41A LTR ERV1 1 553 -1 516 274 181 10 chr12 117060026 117060230 -26726225 + MIR SINE MIR 4 242 -20 2321 103 0 0 chr12 117060260 117060551 -26725904 - AluSg SINE Alu -19 291 1 2334 55 65 14 chr12 117060731 117061022 -26725433 - AluY SINE Alu -5 306 1 2040 130 3 10 chr12 117061022 117061322 -26725133 - AluJo SINE Alu -14 298 1 325 207 183 0 chr12 117061335 117061417 -26725038 - MIR SINE MIR -14 248 152 471 237 31 113 chr12 117061611 117061747 -26724708 - MER5B DNA MER1_type 0 178 32 2053 116 39 0 chr12 117061747 117062031 -26724424 + AluSc SINE Alu 1 295 -14 471 237 31 113 chr12 117062031 117062043 -26724412 - MER5B DNA MER1_type -146 32 21 2163 147 0 0 chr12 117062043 117062342 -26724113 + AluSx SINE Alu 1 299 -13 471 237 31 113 chr12 117062342 117062386 -26724069 - MER5B DNA MER1_type -157 21 1 493 270 70 76 chr12 117062410 117062628 -26723827 + L1ME3A LINE L1 5577 5794 -376 1945 152 30 0 chr12 117062628 117062925 -26723530 + AluJb SINE Alu 1 306 -6 493 270 70 76 chr12 117062925 117063021 -26723434 + L1ME3A LINE L1 5794 5889 -281 2486 154 75 17 chr12 117063062 117063543 -26722912 + L1MB5 LINE L1 5666 6174 0 948 193 6 6 chr12 117063631 117063797 -26722658 - FAM SINE Alu -9 166 1 2242 100 24 0 chr12 117064041 117064332 -26722123 - AluSx SINE Alu -13 299 2 3196 69 33 0 chr12 117064356 117064779 -26721676 - LTR8 LTR ERV1 0 691 255 1056 118 0 0 chr12 117064779 117064915 -26721540 + AluSg/x SINE Alu 161 296 -14 205 310 56 63 chr12 117065061 117065203 -26721252 + MIR3 SINE MIR 68 208 0 779 183 0 8 chr12 117065294 117065425 -26721030 + FLAM_A SINE Alu 4 133 0 1910 88 179 38 chr12 117065488 117065807 -26720648 + THE1B LTR MaLR 1 364 0 460 219 84 0 chr12 117066458 117066577 -26719878 - MLT1D LTR MaLR 0 505 377 409 315 35 65 chr12 117066581 117066608 -26719847 - L1ME4a LINE L1 -69 6052 6026 2270 122 0 6 chr12 117066608 117066920 -26719535 + AluSx SINE Alu 1 310 -2 409 315 35 65 chr12 117066920 117067152 -26719303 - L1ME4a LINE L1 -95 6026 5801 2199 121 0 19 chr12 117067208 117067521 -26718934 + AluSx SINE Alu 1 307 -5 552 207 28 151 chr12 117067687 117067938 -26718517 - MIR SINE MIR -25 237 18 1517 218 6 39 chr12 117067938 117068296 -26718159 - L1M4 LINE L1 -1750 4396 4051 302 273 251 22 chr12 117068503 117068778 -26717677 + L3 LINE CR1 1086 1423 -154 1317 109 6 0 chr12 117068883 117069058 -26717397 + AluSp SINE Alu 113 288 -25 1385 286 37 108 chr12 117069063 117069580 -26716875 + L2 LINE L2 1712 2264 -1050 1924 100 4 0 chr12 117069580 117069830 -26716625 + AluSq SINE Alu 1 251 -62 1385 286 37 108 chr12 117069830 117069844 -26716611 + L2 LINE L2 2264 2277 -1037 360 116 58 29 chr12 117069844 117069913 -26716542 - LTR8 LTR ERV1 -65 626 556 1385 286 37 108 chr12 117069913 117070359 -26716096 + L2 LINE L2 2277 2684 -630 2236 117 0 3 chr12 117070362 117070662 -26715793 - AluSg SINE Alu -11 299 1 592 236 32 45 chr12 117070679 117070808 -26715647 + MIR SINE MIR 19 147 -115 2162 137 0 0 chr12 117070808 117071101 -26715354 + AluSx SINE Alu 1 293 -19 592 236 32 45 chr12 117071101 117071128 -26715327 + MIR SINE MIR 147 173 -89 1086 192 8 40 chr12 117071177 117071427 -26715028 + L1MB7 LINE L1 5931 6172 -12 1802 147 0 72 chr12 117071450 117071769 -26714686 - AluJb SINE Alu -16 296 1 2176 94 25 0 chr12 117071780 117072066 -26714389 - AluSq SINE Alu -20 293 1 24 0 0 0 chr12 117072070 117072094 -26714361 + AT_rich Low_complexity Low_complexity 1 24 0 2140 129 3 22 chr12 117072103 117072414 -26714041 - AluSq SINE Alu -6 307 3 801 112 0 9 chr12 117072421 117072578 -26713877 - AluSp/q SINE Alu 0 313 177 1085 154 0 0 chr12 117072578 117072770 -26713685 + AluSg/x SINE Alu 126 317 0 447 161 37 0 chr12 117072771 117072852 -26713603 + MLT1E2 LTR MaLR 414 497 -129 278 235 0 29 chr12 117072948 117073016 -26713439 - Zaphod DNA AcHobo -3964 67 2 415 256 53 0 chr12 117073079 117073212 -26713243 - LTR67 LTR ERVL -366 191 52 283 318 0 11 chr12 117073246 117073334 -26713121 + MIR SINE MIR 157 243 -19 28 0 0 0 chr12 117073922 117073950 -26712505 + AT_rich Low_complexity Low_complexity 1 28 0 250 189 0 0 chr12 117073950 117074003 -26712452 + L1MC4 LINE L1 6648 6700 -1342 2236 100 3 0 chr12 117074003 117074292 -26712163 - AluSx SINE Alu -18 294 5 799 312 160 2 chr12 117074367 117074761 -26711694 + L2 LINE L2 2505 2960 -354 2071 116 61 0 chr12 117074931 117075225 -26711230 + AluSx SINE Alu 1 312 0 2510 63 3 3 chr12 117075232 117075533 -26710922 + AluSp SINE Alu 1 301 -12 296 250 0 0 chr12 117075946 117076006 -26710449 + L2 LINE L2 2722 2781 -533 628 108 0 0 chr12 117076418 117076501 -26709954 - AluS SINE Alu -229 84 2 841 280 83 55 chr12 117076533 117076756 -26709699 + MLT1K LTR MaLR 141 356 -232 2206 69 33 4 chr12 117076756 117077158 -26709297 + AluSp SINE Alu 1 410 0 841 280 83 55 chr12 117077158 117077369 -26709086 + MLT1K LTR MaLR 356 588 0 23 0 0 0 chr12 117077893 117077916 -26708539 + AT_rich Low_complexity Low_complexity 1 23 0 2262 82 0 0 chr12 117077986 117078291 -26708164 + AluY SINE Alu 2 306 0 1918 157 47 7 chr12 117078794 117079094 -26707361 + AluSx SINE Alu 1 312 0 1833 161 6 29 chr12 117079108 117079424 -26707031 + AluJb SINE Alu 1 309 -3 2220 149 0 0 chr12 117079592 117079901 -26706554 - AluSx SINE Alu -3 309 1 529 232 159 0 chr12 117079986 117080124 -26706331 - MIR SINE MIR 0 262 103 222 196 36 0 chr12 117080197 117080253 -26706202 + (TA)n Simple_repeat Simple_repeat 2 59 0 395 252 211 14 chr12 117080282 117080429 -26706026 - MIR SINE MIR -12 250 75 318 26 0 0 chr12 117080492 117080531 -26705924 + (CAT)n Simple_repeat Simple_repeat 3 41 0 3680 140 26 55 chr12 117080546 117080972 -26705483 + L1MB8 LINE L1 5406 5802 -376 858 168 0 0 chr12 117080972 117081103 -26705352 + FLAM_C SINE Alu 2 132 -1 3680 140 26 55 chr12 117081103 117081439 -26705016 + L1MB8 LINE L1 5802 6146 -32 2074 112 0 74 chr12 117081467 117081805 -26704650 + AluSq SINE Alu 1 313 0 3106 179 77 10 chr12 117083099 117083726 -26702729 - LTR65 LTR ERV1 0 669 1 2217 75 4 14 chr12 117083977 117084285 -26702170 - AluY SINE Alu 0 309 5 466 196 116 0 chr12 117084290 117084402 -26702053 + LTR33 LTR ERVL 397 521 0 2170 114 10 0 chr12 117084475 117084773 -26701682 + AluSq SINE Alu 11 311 -2 238 290 16 0 chr12 117084785 117084847 -26701608 + MIR SINE MIR 35 97 -165 216 97 0 0 chr12 117084858 117084889 -26701566 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1027 169 0 40 chr12 117084929 117085100 -26701355 + L1MB7 LINE L1 5734 5895 -289 2464 90 0 0 chr12 117085100 117085400 -26701055 - AluSc SINE Alu -9 300 1 1027 169 0 40 chr12 117085400 117085453 -26701002 + L1MB7 LINE L1 5895 5949 -235 2185 144 0 0 chr12 117085491 117085803 -26700652 - AluSx SINE Alu 0 312 1 433 324 31 51 chr12 117085837 117086130 -26700325 + L2 LINE L2 1798 2084 -1230 1999 153 0 0 chr12 117086146 117086441 -26700014 - AluJo SINE Alu -17 295 1 555 270 23 17 chr12 117086523 117086697 -26699758 - MLT1I LTR MaLR -8 401 227 180 0 0 0 chr12 117086776 117086796 -26699659 + (A)n Simple_repeat Simple_repeat 1 20 0 523 227 34 74 chr12 117086796 117086972 -26699483 - MLT1I LTR MaLR -240 169 1 915 224 24 0 chr12 117087102 117087272 -26699183 - MER45A DNA AcHobo 0 178 5 2002 63 12 8 chr12 117087399 117087651 -26698804 - AluSp SINE Alu -17 296 44 2216 106 10 0 chr12 117087889 117088182 -26698273 + AluSx SINE Alu 1 296 -16 230 56 28 0 chr12 117088879 117088915 -26697540 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 171 93 195 chr12 117088948 117089092 -26697363 + LTR16C LTR ERVL 225 333 -158 2069 109 0 7 chr12 117089092 117089376 -26697079 - AluSx SINE Alu -30 282 1 336 171 93 195 chr12 117089376 117089488 -26696967 + LTR16C LTR ERVL 333 455 -36 314 275 116 36 chr12 117089508 117089646 -26696809 - L2 LINE L2 -527 2787 2639 2064 136 10 10 chr12 117089934 117090244 -26696211 + AluJo SINE Alu 3 312 0 2410 64 44 3 chr12 117091267 117091563 -26694892 - AluY SINE Alu -3 308 1 2088 104 24 10 chr12 117091757 117092046 -26694409 - AluSp SINE Alu -20 293 1 1059 185 40 10 chr12 117092161 117092361 -26694094 - MER3 DNA MER1_type -2 207 2 1392 164 65 45 chr12 117092468 117092578 -26693877 + AluJb SINE Alu 15 121 -191 2233 120 3 0 chr12 117092578 117092878 -26693577 - AluSq SINE Alu 0 313 13 1674 99 0 14 chr12 117092878 117093099 -26693356 - AluSg/x SINE Alu -29 283 66 1392 164 65 45 chr12 117093099 117093279 -26693176 + AluJb SINE Alu 120 312 0 350 73 0 18 chr12 117093287 117093342 -26693113 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 539 325 11 5 chr12 117094248 117094439 -26692016 - MLT1L LTR MaLR 0 615 424 265 296 72 8 chr12 117094496 117094621 -26691834 - MLT1L LTR MaLR -341 274 142 654 281 177 50 chr12 117094680 117095318 -26691137 - L2 LINE L2 -2280 1034 316 809 147 44 15 chr12 117095562 117095698 -26690757 + AluJo SINE Alu 5 144 -168 1675 94 0 5 chr12 117095700 117095913 -26690542 + AluSq SINE Alu 1 212 -101 684 175 9 9 chr12 117095917 117096031 -26690424 - FLAM_C SINE Alu -28 115 2 661 134 0 0 chr12 117096113 117096210 -26690245 + AluY SINE Alu 212 308 -3 442 188 0 79 chr12 117096212 117096313 -26690142 + AluJo/FRAM SINE Alu 137 229 -83 252 0 0 0 chr12 117096335 117096363 -26690092 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 357 225 27 27 chr12 117096450 117096561 -26689894 + MLT1L LTR MaLR 158 268 -347 1607 188 14 0 chr12 117096568 117096844 -26689611 + AluJo SINE Alu 1 280 -32 426 143 0 0 chr12 117096844 117096921 -26689534 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 234 178 0 0 chr12 117096968 117097013 -26689442 + MLT1L LTR MaLR 416 460 -155 582 133 0 0 chr12 117097057 117097147 -26689308 - AluS SINE Alu 0 309 220 638 180 8 0 chr12 117097148 117097276 -26689179 - L1M3 LINE L1 -468 5715 5587 2313 102 0 10 chr12 117097282 117097585 -26688870 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 117097776 117097797 -26688658 + AT_rich Low_complexity Low_complexity 1 21 0 1378 123 14 41 chr12 117099229 117099449 -26687006 + AluJo SINE Alu 1 214 -98 774 174 0 0 chr12 117099451 117099572 -26686883 - AluJo/FLAM SINE Alu -190 122 2 575 266 87 6 chr12 117099659 117099832 -26686623 - MLT1J LTR MaLR -260 251 65 951 272 58 28 chr12 117100483 117100967 -26685488 + MLT1K LTR MaLR 66 584 -4 2436 104 3 0 chr12 117101069 117101376 -26685079 - AluSx SINE Alu -4 308 1 297 135 0 0 chr12 117101447 117101499 -26684956 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 237 295 13 13 chr12 117101601 117101663 -26684792 - L2 LINE L2 0 3272 3211 697 304 16 5 chr12 117101663 117101854 -26684601 + MIR SINE MIR 4 196 -66 549 80 0 0 chr12 117101942 117102017 -26684438 + (GA)n Simple_repeat Simple_repeat 2 76 0 768 179 130 72 chr12 117102079 117102255 -26684200 + MER20 DNA MER1_type 1 193 -26 1956 144 3 7 chr12 117102255 117102578 -26683877 + AluJo SINE Alu 1 322 0 768 179 130 72 chr12 117102578 117102607 -26683848 + MER20 DNA MER1_type 193 219 0 270 138 0 123 chr12 117102639 117102704 -26683751 + L2 LINE L2 3216 3272 0 220 200 0 0 chr12 117102704 117102754 -26683701 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 541 265 118 24 chr12 117103194 117103405 -26683050 - L2 LINE L2 0 3313 3083 389 103 0 0 chr12 117103417 117103475 -26682980 - L1MB5 LINE L1 -8 6166 6109 689 138 28 0 chr12 117103476 117103585 -26682870 + AluJo/FLAM SINE Alu 7 118 -194 2049 126 6 25 chr12 117103585 117103903 -26682552 - AluSx SINE Alu 0 312 1 2459 147 20 15 chr12 117103912 117104369 -26682086 - L1MB5 LINE L1 -43 6131 5673 1005 134 0 0 chr12 117104369 117104503 -26681952 + AluSq/x SINE Alu 1 134 -179 1646 201 42 10 chr12 117104520 117104704 -26681751 - L1MB5 LINE L1 -501 5679 5502 2104 105 25 0 chr12 117104704 117104990 -26681465 - AluSx SINE Alu -19 293 1 1646 201 42 10 chr12 117104990 117105188 -26681267 - L1MB5 LINE L1 -678 5502 5285 2286 97 0 7 chr12 117105201 117105514 -26680941 - AluSq SINE Alu 0 311 1 1889 168 0 16 chr12 117105514 117105818 -26680637 - AluJb SINE Alu -13 299 1 730 236 14 0 chr12 117105823 117105967 -26680488 - L2 LINE L2 -244 3069 2924 213 261 15 31 chr12 117105958 117106023 -26680432 + MIR SINE MIR 89 152 -110 * 603 206 120 23 chr12 117106068 117106243 -26680212 + MIR SINE MIR 63 254 -8 1581 153 8 4 chr12 117106278 117106519 -26679936 - AluJb SINE Alu -70 242 1 2192 110 3 0 chr12 117106523 117106815 -26679640 - AluSp SINE Alu -20 293 1 182 139 47 0 chr12 117106826 117106869 -26679586 + C-rich Low_complexity Low_complexity 2 46 0 1054 172 18 0 chr12 117106875 117107044 -26679411 - FRAM SINE Alu -5 171 1 1354 88 119 5 chr12 117107160 117107353 -26679102 + AluSq SINE Alu 84 298 -15 300 265 145 0 chr12 117107384 117107467 -26678988 + MIR SINE MIR 43 137 -71 2413 68 7 3 chr12 117107582 117107874 -26678581 + AluSp SINE Alu 1 293 -20 346 275 210 7 chr12 117108053 117108191 -26678264 + MIR SINE MIR 52 217 -45 2397 89 10 0 chr12 117108254 117108558 -26677897 + AluSx SINE Alu 1 307 -5 2388 107 0 0 chr12 117108642 117108952 -26677503 + AluSg SINE Alu 1 310 0 309 308 67 0 chr12 117109029 117109133 -26677322 + MIR SINE MIR 19 129 -79 193 224 0 17 chr12 117109550 117109608 -26676847 - MIR SINE MIR -110 152 96 2169 111 0 20 chr12 117109616 117109954 -26676501 - AluSx SINE Alu 0 312 5 771 143 8 15 chr12 117109967 117110100 -26676355 - FLAM_C SINE Alu 0 133 2 1163 105 7 0 chr12 117110458 117110611 -26675844 - AluSg/x SINE Alu -14 298 145 2409 81 0 3 chr12 117110615 117110912 -26675543 - AluSq SINE Alu -17 296 1 764 237 159 48 chr12 117110980 117111376 -26675079 - MLT1L LTR MaLR -29 586 147 970 168 40 0 chr12 117111378 117111551 -26674904 + MER20 DNA MER1_type 4 183 -36 835 119 8 8 chr12 117111879 117112005 -26674450 - FLAM_C SINE Alu -17 126 1 249 196 0 22 chr12 117112005 117112051 -26674404 + MER20 DNA MER1_type 175 219 0 329 152 65 76 chr12 117112426 117112518 -26673937 - L1ME4a LINE L1 -56 6065 5975 2254 101 16 0 chr12 117112831 117113138 -26673317 - AluSx SINE Alu 0 312 1 1288 266 62 49 chr12 117113139 117113670 -26672785 + MLT1K LTR MaLR 35 572 -16 257 248 149 9 chr12 117113698 117113844 -26672611 + MIR SINE MIR 22 191 -61 533 194 194 101 chr12 117114044 117114292 -26672163 - Charlie8 DNA MER1_type -2005 412 142 2156 131 0 7 chr12 117114357 117114662 -26671793 - AluSx SINE Alu -9 303 1 274 164 18 18 chr12 117115377 117115432 -26671023 - Charlie8 DNA MER1_type -2267 150 96 2221 135 0 0 chr12 117115433 117115745 -26670710 - AluSx SINE Alu 0 312 1 659 75 0 0 chr12 117115745 117115825 -26670630 - AluSq/x SINE Alu -195 117 38 248 239 42 0 chr12 117116058 117116129 -26670326 - MIR SINE MIR -72 190 117 2003 139 0 14 chr12 117116427 117116722 -26669733 + AluJb SINE Alu 1 291 -21 1344 269 81 5 chr12 117116728 117117125 -26669330 + LTR16B LTR ERVL 38 464 0 436 240 73 73 chr12 117117202 117117333 -26669122 + MIR SINE MIR 1 134 -128 1261 155 4 35 chr12 117117333 117117559 -26668896 + MER20 DNA MER1_type 1 219 0 436 240 73 73 chr12 117117559 117117619 -26668836 + MIR SINE MIR 133 192 -70 283 205 51 39 chr12 117117800 117117878 -26668577 + L2 LINE L2 3194 3272 0 465 76 38 0 chr12 117118287 117118366 -26668089 + CT-rich Low_complexity Low_complexity 1 82 0 342 183 0 14 chr12 117118841 117118912 -26667543 + MIR SINE MIR 74 143 -119 491 211 23 53 chr12 117118926 117119059 -26667396 + L2 LINE L2 3184 3312 -1 516 246 102 6 chr12 117119130 117119297 -26667158 - L2 LINE L2 -13 3300 3118 2411 71 3 3 chr12 117119297 117119591 -26666864 - AluSp SINE Alu -19 294 1 2173 133 3 3 chr12 117119809 117120111 -26666344 + AluSx SINE Alu 1 302 -10 657 195 39 0 chr12 117120121 117120249 -26666206 + FLAM_C SINE Alu 1 133 0 1630 156 51 20 chr12 117120287 117120397 -26666058 - AluJo SINE Alu -8 304 199 1811 156 187 8 chr12 117120397 117120788 -26665667 + LOR1b LTR ERV1 1 461 0 1630 156 51 20 chr12 117120788 117120972 -26665483 - AluJo SINE Alu -113 199 1 811 231 98 86 chr12 117120975 117121395 -26665060 + MLT1H LTR MaLR 110 534 -15 462 210 86 49 chr12 117121388 117121401 -26665054 + MER112 DNA MER1_type 89 100 -160 * 2237 107 3 10 chr12 117121401 117121711 -26664744 + AluSx SINE Alu 1 308 -4 462 210 86 49 chr12 117121711 117121859 -26664596 + MER112 DNA MER1_type 100 256 -4 1952 132 58 0 chr12 117121915 117122210 -26664245 + AluJo SINE Alu 1 312 0 249 121 30 45 chr12 117122210 117122276 -26664179 + GA-rich Low_complexity Low_complexity 2 66 0 2250 173 7 38 chr12 117122304 117122441 -26664014 - L1MB5 LINE L1 -7 6167 6027 2333 112 0 3 chr12 117122441 117122754 -26663701 - AluSx SINE Alu 0 312 1 2250 173 7 38 chr12 117122754 117123039 -26663416 - L1MB5 LINE L1 -147 6027 5758 528 267 18 24 chr12 117123612 117123741 -26662714 + MIR SINE MIR 29 158 -104 2123 127 7 3 chr12 117123741 117124041 -26662414 + AluJo SINE Alu 1 301 -11 528 267 18 24 chr12 117124041 117124076 -26662379 + MIR SINE MIR 158 192 -70 2196 121 3 0 chr12 117124295 117124584 -26661871 - AluSx SINE Alu -22 290 1 647 237 150 21 chr12 117124584 117124976 -26661479 + LTR33 LTR ERVL 34 521 0 1826 153 4 4 chr12 117125438 117125762 -26660693 - AluJb SINE Alu 0 324 1 242 250 0 53 chr12 117125982 117126058 -26660397 + MIR SINE MIR 184 255 -7 1538 152 66 48 chr12 117126100 117126389 -26660066 + AluJb SINE Alu 1 294 -18 276 180 49 16 chr12 117127424 117127485 -26658970 + MLT1K LTR MaLR 236 298 -290 2227 127 0 6 chr12 117127495 117127809 -26658646 - AluSx SINE Alu 0 312 1 699 142 9 0 chr12 117127809 117127915 -26658540 + LTR47A LTR ERVL 346 452 0 2467 139 14 99 chr12 117128469 117128615 -26657840 + L1MB7 LINE L1 5678 5835 -349 2001 126 0 49 chr12 117128615 117128941 -26657514 + AluSx SINE Alu 1 310 -2 2467 139 14 99 chr12 117128941 117129278 -26657177 + L1MB7 LINE L1 5835 6111 -73 2165 109 0 50 chr12 117129278 117129599 -26656856 - AluSx SINE Alu -7 305 1 2467 139 14 99 chr12 117129599 117129668 -26656787 + L1MB7 LINE L1 6111 6184 0 1027 116 7 14 chr12 117129951 117130098 -26656357 + AluSg/x SINE Alu 135 280 -30 480 18 0 0 chr12 117130101 117130158 -26656297 + (CA)n Simple_repeat Simple_repeat 2 58 0 2302 129 0 0 chr12 117130535 117130884 -26655571 - AluSx SINE Alu 0 350 2 873 137 15 0 chr12 117130934 117131065 -26655390 - FLAM_C SINE Alu 0 143 11 551 246 131 6 chr12 117131108 117131291 -26655164 - MIR SINE MIR -18 244 39 284 140 0 20 chr12 117131589 117131639 -26654816 - FAM SINE Alu -15 164 116 830 170 0 39 chr12 117131641 117131794 -26654661 - AluJo SINE Alu -165 147 1 309 268 27 18 chr12 117131979 117132091 -26654364 + L2 LINE L2 3189 3301 -12 237 98 0 0 chr12 117132781 117132822 -26653633 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 489 100 36 18 chr12 117133001 117133111 -26653344 + (CCCCG)n Simple_repeat Simple_repeat 3 114 0 2381 82 0 0 chr12 117134216 117134520 -26651935 - AluSx SINE Alu -7 305 2 2648 43 0 0 chr12 117134823 117135123 -26651332 + AluY SINE Alu 1 300 -11 493 239 31 15 chr12 117135657 117135787 -26650668 - Charlie8 DNA MER1_type -2191 226 95 295 250 11 11 chr12 117136396 117136484 -26649971 + MIR SINE MIR 66 153 -109 1777 162 33 23 chr12 117137334 117137637 -26648818 + AluJb SINE Alu 1 306 -6 327 228 132 35 chr12 117138272 117138386 -26648069 + MER94 DNA DNA 1 125 -9 21 0 0 0 chr12 117138661 117138682 -26647773 + AT_rich Low_complexity Low_complexity 1 21 0 2236 100 3 13 chr12 117139192 117139493 -26646962 - AluSg SINE Alu -12 298 1 243 88 0 0 chr12 117139593 117139627 -26646828 + (TA)n Simple_repeat Simple_repeat 1 34 0 2043 143 3 3 chr12 117139827 117140127 -26646328 + AluJb SINE Alu 1 300 -12 2298 108 0 3 chr12 117140178 117140474 -26645981 - AluSx SINE Alu -17 295 1 456 339 151 25 chr12 117140474 117140866 -26645589 - L2 LINE L2 -7 3265 2825 2461 75 10 0 chr12 117141009 117141314 -26645141 + AluSg SINE Alu 1 308 -2 2099 145 0 3 chr12 117141787 117142090 -26644365 - AluJb SINE Alu -2 310 9 2015 143 3 16 chr12 117142167 117142474 -26643981 + AluJo SINE Alu 1 303 -9 616 269 163 27 chr12 117142552 117142834 -26643621 - L1ME4a LINE L1 -209 5912 5565 1648 92 5 0 chr12 117142834 117143040 -26643415 - AluSg/x SINE Alu -19 293 87 616 269 163 27 chr12 117143040 117143132 -26643323 - L1ME4a LINE L1 -556 5565 5487 2187 134 0 0 chr12 117144413 117144718 -26641737 + AluSg SINE Alu 1 305 -5 2078 98 22 0 chr12 117145892 117146168 -26640287 + AluSg SINE Alu 1 282 -28 2112 132 0 7 chr12 117146278 117146594 -26639861 + AluSx SINE Alu 1 314 0 2444 87 0 0 chr12 117147260 117147559 -26638896 - AluSp SINE Alu -14 299 1 284 146 0 0 chr12 117147831 117147879 -26638576 - L1MA10 LINE L1 -3 6331 6284 2086 142 3 6 chr12 117147882 117148193 -26638262 + AluJb SINE Alu 3 312 0 1597 170 0 90 chr12 117148228 117148354 -26638101 + AluJo SINE Alu 10 146 -166 2101 71 0 8 chr12 117148354 117148608 -26637847 + AluY SINE Alu 38 289 -22 1597 170 0 90 chr12 117148608 117148623 -26637832 + AluJo SINE Alu 146 161 -151 816 9 45 0 chr12 117148623 117148734 -26637721 + (TAAAA)n Simple_repeat Simple_repeat 5 120 0 1597 170 0 90 chr12 117148734 117148902 -26637553 + AluJo SINE Alu 161 292 -20 361 154 8 130 chr12 117148908 117148931 -26637524 - L1MA10 LINE L1 -46 6288 6264 1217 107 17 0 chr12 117148931 117149108 -26637347 - L1PA8 LINE L1 -1 6171 5992 424 211 19 91 chr12 117149108 117149317 -26637138 - L1ME1 LINE L1 -46 6120 5927 2370 73 0 10 chr12 117149523 117149853 -26636602 - AluSp SINE Alu 0 327 1 2230 94 0 42 chr12 117149855 117150164 -26636291 - AluSp SINE Alu -17 296 1 1965 116 10 23 chr12 117150424 117150727 -26635728 + AluSx SINE Alu 1 299 -13 2053 131 3 19 chr12 117150979 117151293 -26635162 - AluSx SINE Alu -3 309 1 1688 159 3 44 chr12 117151448 117151743 -26634712 + AluJb SINE Alu 14 296 -16 25 0 0 0 chr12 117152182 117152207 -26634248 + AT_rich Low_complexity Low_complexity 1 25 0 1180 105 12 23 chr12 117152834 117153006 -26633449 - AluSg/x SINE Alu -9 303 134 2403 91 0 0 chr12 117153006 117153339 -26633116 - AluSg SINE Alu 0 310 3 2193 113 3 0 chr12 117153344 117153636 -26632819 - AluSx SINE Alu -19 293 1 1200 105 19 0 chr12 117153690 117153852 -26632603 - AluSg/x SINE Alu -7 303 139 1688 172 3 35 chr12 117153855 117154169 -26632286 - AluJb SINE Alu -8 304 1 2262 103 7 3 chr12 117154261 117154562 -26631893 - AluSg SINE Alu -8 302 1 2135 109 0 3 chr12 117154625 117154938 -26631517 - AluSx SINE Alu 0 312 1 920 121 0 0 chr12 117155517 117155641 -26630814 + FLAM_C SINE Alu 5 128 -5 29 0 0 0 chr12 117156182 117156211 -26630244 + AT_rich Low_complexity Low_complexity 1 29 0 2926 200 57 103 chr12 117156489 117156863 -26629592 - L1MC5 LINE L1 -36 7925 7535 198 0 0 0 chr12 117156863 117156885 -26629570 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2926 200 57 103 chr12 117156885 117157306 -26629149 - L1MC5 LINE L1 -426 7535 7096 2329 92 7 0 chr12 117157306 117157599 -26628856 - AluSg1 SINE Alu -14 295 1 2926 200 57 103 chr12 117157599 117158066 -26628389 - L1MC5 LINE L1 -865 7096 6609 4213 133 36 67 chr12 117158066 117158876 -26627579 - LTR1 LTR ERV1 0 785 1 2926 200 57 103 chr12 117158876 117158921 -26627534 - L1MC5 LINE L1 -1352 6609 6563 1889 103 99 0 chr12 117158921 117159203 -26627252 - AluSg SINE Alu 0 310 1 2926 200 57 103 chr12 117159203 117159433 -26627022 - L1MC5 LINE L1 -1398 6563 6448 21 36 0 0 chr12 117159452 117159480 -26626975 + AT_rich Low_complexity Low_complexity 1 28 0 355 239 43 17 chr12 117159694 117159811 -26626644 - L1MC5 LINE L1 -1849 5959 5840 2733 138 15 31 chr12 117159826 117160346 -26626109 - L1MB8 LINE L1 -1 6413 5902 6366 118 30 5 chr12 117160357 117161370 -26625085 - L1MA8 LINE L1 0 6291 5254 1364 194 0 36 chr12 117161371 117161438 -26625017 - L1MB8 LINE L1 -820 5562 5494 1477 169 65 0 chr12 117161438 117161717 -26624738 - AluJo SINE Alu -15 297 1 1364 194 0 36 chr12 117161717 117161958 -26624497 - L1MB8 LINE L1 -888 5494 5265 651 161 26 52 chr12 117161972 117162051 -26624404 - L1MB8 LINE L1 -2493 3889 3814 2038 89 19 29 chr12 117162051 117162364 -26624091 - AluSp SINE Alu -3 310 1 651 161 26 52 chr12 117162364 117162439 -26624016 - L1MB8 LINE L1 -2568 3814 3739 2039 89 10 30 chr12 117162441 117162743 -26623712 - AluSp SINE Alu -17 296 1 330 187 27 0 chr12 117162743 117162818 -26623637 - L1MB8 LINE L1 -2567 3815 3739 1798 124 0 8 chr12 117162820 117163087 -26623368 - AluSg1 SINE Alu -22 287 23 531 138 0 0 chr12 117163087 117163167 -26623288 + AluY SINE Alu 216 295 -16 2082 131 13 0 chr12 117163175 117163481 -26622974 + AluSx SINE Alu 1 310 -2 427 258 8 0 chr12 117163488 117163620 -26622835 - L1MB8 LINE L1 -3267 3115 2983 400 131 16 0 chr12 117163620 117163681 -26622774 - Alu SINE Alu -22 288 227 3491 132 42 55 chr12 117163694 117164146 -26622309 - L1MB8 LINE L1 -3486 2896 2440 2251 86 0 3 chr12 117164146 117164438 -26622017 - AluSq SINE Alu -22 291 1 3491 132 42 55 chr12 117164438 117165327 -26621128 - L1MB8 LINE L1 -3942 2440 1653 2016 145 0 0 chr12 117165327 117165623 -26620832 - AluSx SINE Alu -16 296 1 3491 132 42 55 chr12 117165623 117165843 -26620612 - L1MB8 LINE L1 -4729 1653 1432 2107 110 0 3 chr12 117165894 117166186 -26620269 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr12 117166190 117166218 -26620237 + AT_rich Low_complexity Low_complexity 1 28 0 3180 166 19 14 chr12 117166296 117166889 -26619566 - L1MB8 LINE L1 -4542 1841 1252 1885 132 6 35 chr12 117166889 117167207 -26619248 - AluSx SINE Alu -3 309 1 3180 166 19 14 chr12 117167207 117167244 -26619211 - L1MB8 LINE L1 -5131 1252 1217 747 203 0 0 chr12 117167244 117167362 -26619093 - FLAM_C SINE Alu -15 118 1 3180 166 19 14 chr12 117167362 117167416 -26619039 - L1MB8 LINE L1 -5166 1217 849 2297 64 3 0 chr12 117167417 117167714 -26618741 - AluY SINE Alu -13 298 1 1122 60 0 0 chr12 117167714 117167848 -26618607 - AluY SINE Alu -177 134 1 3718 154 78 42 chr12 117167848 117168013 -26618442 - L1MB8 LINE L1 -5571 813 655 1485 186 36 4 chr12 117168013 117168293 -26618162 + AluJb SINE Alu 1 289 -23 3718 154 78 42 chr12 117168293 117168899 -26617556 - L1MB8 LINE L1 -5729 655 14 2125 204 33 69 chr12 117168987 117169537 -26616918 - MLT2B3 LTR ERVL -24 530 1 393 260 97 33 chr12 117169612 117169890 -26616565 - L1M4 LINE L1 -1862 4284 3991 2036 131 0 22 chr12 117169961 117170274 -26616181 - AluSx SINE Alu -6 306 1 1820 139 13 33 chr12 117170277 117170580 -26615875 - AluJo SINE Alu -15 297 1 2258 104 0 0 chr12 117171152 117171461 -26614994 - AluSg SINE Alu -1 309 1 2153 128 0 0 chr12 117172055 117172367 -26614088 - AluSq SINE Alu -1 312 1 2312 80 0 0 chr12 117172441 117172740 -26613715 - AluSg SINE Alu -11 299 1 32 0 0 0 chr12 117172778 117172810 -26613645 + AT_rich Low_complexity Low_complexity 1 32 0 405 344 81 37 chr12 117173856 117174129 -26612326 + L3 LINE CR1 104 388 -1189 22 0 0 0 chr12 117174162 117174184 -26612271 + AT_rich Low_complexity Low_complexity 1 22 0 400 307 217 0 chr12 117174393 117174582 -26611873 - MIR SINE MIR -7 255 26 287 229 88 3 chr12 117174578 117174662 -26611793 + MIR SINE MIR 81 170 -38 * 852 258 131 0 chr12 117174786 117175015 -26611440 + MIR SINE MIR 2 260 -2 193 184 0 0 chr12 117175023 117175061 -26611394 + L3 LINE CR1 643 680 -897 512 156 0 37 chr12 117175274 117175383 -26611072 + L1MB3 LINE L1 6072 6176 -7 197 346 94 24 chr12 117176425 117176552 -26609903 + L3 LINE CR1 533 668 -909 * 655 287 30 42 chr12 117176550 117176654 -26609801 - MIR SINE MIR 0 262 158 1830 121 6 61 chr12 117176654 117176984 -26609471 - AluJo SINE Alu 0 312 1 655 287 30 42 chr12 117176984 117177116 -26609339 - MIR SINE MIR -104 158 29 358 298 31 62 chr12 117177114 117177275 -26609180 + L3 LINE CR1 685 840 -737 * 288 291 140 22 chr12 117177361 117177540 -26608915 + L3 LINE CR1 1040 1239 -338 1069 158 47 11 chr12 117177625 117177815 -26608640 + MER68 LTR ERV1 1 197 -365 608 103 21 0 chr12 117177829 117177926 -26608529 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1958 190 63 0 chr12 117177928 117178276 -26608179 + MER68 LTR ERV1 193 562 0 197 368 37 22 chr12 117178276 117178412 -26608043 + L3 LINE CR1 1281 1418 -159 1922 120 0 0 chr12 117178414 117178689 -26607766 - AluSx SINE Alu -37 275 1 2376 78 0 3 chr12 117178770 117179079 -26607376 - AluY SINE Alu -3 308 1 997 101 0 0 chr12 117180974 117181113 -26605342 + AluSq SINE Alu 1 139 -173 207 245 0 0 chr12 117181117 117181166 -26605289 + CT-rich Low_complexity Low_complexity 2 50 0 9510 38 2 156 chr12 117181169 117182808 -26603647 + SVA Other Other 1 1386 0 2585 45 0 3 chr12 117182822 117183134 -26603321 + AluY SINE Alu 1 311 0 1189 112 12 0 chr12 117183134 117183304 -26603151 + AluSq SINE Alu 134 305 -8 459 256 43 0 chr12 117184222 117184339 -26602116 + MER5C DNA MER1_type 1 122 -202 226 143 143 55 chr12 117184346 117184437 -26602018 + MER5C DNA MER1_type 226 324 0 480 272 105 21 chr12 117184444 117184635 -26601820 - L1ME LINE L1 -529 5637 5431 207 0 0 0 chr12 117184635 117184658 -26601797 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 291 222 0 0 chr12 117184689 117184752 -26601703 - L1MC4 LINE L1 -1520 6522 6460 472 231 29 0 chr12 117185236 117185340 -26601115 + Charlie1 DNA MER1_type 111 217 -2544 1878 134 0 3 chr12 117186087 117186410 -26600045 - AluSx SINE Alu 0 322 1 2291 88 0 0 chr12 117186639 117186935 -26599520 + AluSx SINE Alu 1 296 -16 800 154 8 0 chr12 117187594 117187711 -26598744 - AluSq/x SINE Alu -193 119 2 1794 117 10 27 chr12 117187959 117188257 -26598198 - AluJb SINE Alu -11 301 9 1880 114 10 17 chr12 117188296 117188586 -26597869 + AluSx SINE Alu 1 288 -24 2230 92 3 0 chr12 117188639 117188933 -26597522 - AluSg SINE Alu -15 295 1 792 241 45 27 chr12 117189210 117189430 -26597025 - MIR SINE MIR -19 243 20 2336 74 0 3 chr12 117190193 117190491 -26595964 + AluSq SINE Alu 1 297 -16 1739 113 12 0 chr12 117190491 117190747 -26595708 + AluSq SINE Alu 49 307 -6 180 0 0 0 chr12 117190969 117190989 -26595466 + (TTG)n Simple_repeat Simple_repeat 2 21 0 857 125 0 15 chr12 117191528 117191664 -26594791 - AluJo SINE Alu -178 134 1 2216 109 3 0 chr12 117191741 117192053 -26594402 + AluSq SINE Alu 1 313 0 2522 58 3 0 chr12 117192070 117192379 -26594076 + L1PA8 LINE L1 5805 6114 -58 263 217 61 147 chr12 117192435 117192633 -26593822 + Charlie8 DNA MER1_type 195 375 -2042 220 318 45 83 chr12 117192633 117192765 -26593690 - L2 LINE L2 -100 3172 3046 2277 73 10 3 chr12 117193114 117193415 -26593040 - AluSg SINE Alu -7 303 1 21 0 0 0 chr12 117193415 117193436 -26593019 + AT_rich Low_complexity Low_complexity 1 21 0 1051 142 0 0 chr12 117193769 117193924 -26592531 - AluJo/FRAM SINE Alu -24 288 134 2132 91 0 42 chr12 117193924 117194231 -26592224 - AluSx SINE Alu -18 294 1 795 217 122 122 chr12 117194288 117194606 -26591849 + MER87 LTR ERV1 68 388 -153 2179 80 0 3 chr12 117194606 117194893 -26591562 - AluSc SINE Alu -23 286 1 795 217 122 122 chr12 117194893 117195048 -26591407 + MER87 LTR ERV1 387 541 0 351 211 196 60 chr12 117195048 117195181 -26591274 + MIR SINE MIR 102 252 -10 458 299 0 0 chr12 117195251 117195368 -26591087 + MIR SINE MIR 56 172 -90 541 255 141 16 chr12 117195916 117196108 -26590347 + MIR SINE MIR 47 262 0 1908 135 0 23 chr12 117196206 117196509 -26589946 - AluSx SINE Alu -16 296 1 330 232 71 20 chr12 117196578 117196677 -26589778 + MIR SINE MIR 50 153 -55 2981 120 20 68 chr12 117196677 117196918 -26589537 + L1MA4A LINE L1 5737 5988 -315 2006 124 3 0 chr12 117196918 117197209 -26589246 + AluSx SINE Alu 3 294 -18 2981 120 20 68 chr12 117197209 117197384 -26589071 + L1MA4A LINE L1 5988 6119 -184 1622 144 0 90 chr12 117197384 117197576 -26588879 - AluSx SINE Alu -8 304 153 2016 111 0 7 chr12 117197576 117197864 -26588591 - AluSx SINE Alu -24 288 3 1622 144 0 90 chr12 117197864 117198005 -26588450 - AluSx SINE Alu -159 153 1 2981 120 20 68 chr12 117198005 117198178 -26588277 + L1MA4A LINE L1 6119 6299 -4 707 127 0 0 chr12 117198187 117198297 -26588158 + L1PB3 LINE L1 6041 6150 -4 41 0 0 0 chr12 117198297 117198338 -26588117 + AT_rich Low_complexity Low_complexity 1 41 0 204 239 22 0 chr12 117198346 117198392 -26588063 + MIR3 SINE MIR 152 198 -10 2225 77 3 10 chr12 117198399 117198696 -26587759 - AluSp SINE Alu -18 295 1 288 322 170 64 chr12 117198913 117198997 -26587458 - L2 LINE L2 -6 3266 3192 189 0 0 0 chr12 117198997 117199018 -26587437 + (TC)n Simple_repeat Simple_repeat 2 22 0 2221 87 0 13 chr12 117199018 117199318 -26587137 - AluSx SINE Alu -16 296 1 288 322 170 64 chr12 117199318 117199620 -26586835 - L2 LINE L2 -79 3193 2838 207 237 65 32 chr12 117200447 117200540 -26585915 + MIR SINE MIR 43 138 -70 190 319 60 70 chr12 117200848 117201033 -26585422 + MIR SINE MIR 9 191 -71 200 300 0 33 chr12 117201208 117201298 -26585157 + G-rich Low_complexity Low_complexity 1 87 0 221 188 12 153 chr12 117201344 117201429 -26585026 + MIR SINE MIR 110 182 -80 556 307 79 9 chr12 117201536 117201751 -26584704 - MIR SINE MIR -13 249 20 817 161 0 0 chr12 117201751 117201915 -26584540 - FLAM_C SINE Alu 0 165 2 398 132 40 0 chr12 117201951 117202027 -26584428 - L1MB8 LINE L1 -9 6169 6091 2042 103 21 0 chr12 117202044 117202325 -26584130 - AluSg SINE Alu -23 287 1 370 162 40 0 chr12 117202325 117202399 -26584056 - L1MB7 LINE L1 -69 6115 6039 749 221 0 0 chr12 117202400 117202540 -26583915 + FRAM SINE Alu 1 137 -39 2665 158 54 40 chr12 117202540 117202957 -26583498 - L1MB7 LINE L1 -146 6038 5610 1971 132 0 23 chr12 117202957 117203261 -26583194 - AluSx SINE Alu -14 298 2 2665 158 54 40 chr12 117203261 117203400 -26583055 - L1MB7 LINE L1 -574 5610 5474 835 211 0 0 chr12 117203407 117203573 -26582882 - AluJb SINE Alu -10 302 137 272 250 236 36 chr12 117203602 117203742 -26582713 + MIR SINE MIR 30 197 -65 339 257 0 0 chr12 117203836 117203906 -26582549 + L2 LINE L2 3185 3254 -18 1687 162 9 32 chr12 117204083 117204398 -26582057 + AluJo SINE Alu 1 308 -4 566 144 16 56 chr12 117204409 117204534 -26581921 - L1MB2 LINE L1 -79 6092 5973 2107 92 17 3 chr12 117204538 117204830 -26581625 - AluSq SINE Alu -17 296 1 392 219 151 78 chr12 117204834 117205053 -26581402 - MIR SINE MIR -6 256 22 246 209 16 163 chr12 117205052 117205181 -26581274 + MIR3 SINE MIR 78 187 -21 * 180 0 0 0 chr12 117205344 117205364 -26581091 + (CCCCAG)n Simple_repeat Simple_repeat 2 21 0 215 203 76 13 chr12 117205514 117205588 -26580867 + MIR SINE MIR 92 169 -63 2180 94 3 3 chr12 117205891 117206189 -26580266 + AluSx SINE Alu 1 298 -14 295 276 39 55 chr12 117206218 117206345 -26580110 - MIR SINE MIR -78 184 60 195 191 0 24 chr12 117206376 117206418 -26580037 + L3 LINE CR1 1424 1464 -113 1427 186 33 13 chr12 117206493 117206794 -26579661 + AluJb SINE Alu 6 312 0 1684 172 3 10 chr12 117206807 117207110 -26579345 + AluJb SINE Alu 1 301 -11 193 107 0 0 chr12 117207428 117207456 -26578999 - MIR SINE MIR -118 144 117 252 215 47 28 chr12 117207552 117207659 -26578796 + (CGGG)n Simple_repeat Simple_repeat 4 112 0 229 248 95 38 chr12 117207832 117207937 -26578518 + MIR SINE MIR 35 145 -63 188 65 0 32 chr12 117208248 117208279 -26578176 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 197 248 316 20 chr12 117208378 117208476 -26577979 - MIR3 SINE MIR -53 155 28 192 263 42 25 chr12 117208867 117208985 -26577470 + MIR SINE MIR 64 183 -79 201 210 48 81 chr12 117209629 117209691 -26576764 + L2 LINE L2 3210 3269 -3 207 298 97 9 chr12 117209994 117210108 -26576347 - L2 LINE L2 -586 2728 2605 250 186 0 0 chr12 117210175 117210218 -26576237 + L2 LINE L2 3264 3306 -7 476 289 164 5 chr12 117210647 117210848 -26575607 - MIR SINE MIR -14 248 16 1669 158 35 0 chr12 117210943 117211227 -26575228 + AluJo SINE Alu 1 294 -18 232 308 13 0 chr12 117211279 117211357 -26575098 + MIR SINE MIR 63 141 -67 420 257 200 0 chr12 117211660 117211800 -26574655 + MIR SINE MIR 12 179 -83 1462 133 83 36 chr12 117211863 117212141 -26574314 - AluJo SINE Alu -6 306 16 479 250 20 0 chr12 117212211 117212311 -26574144 - MIR SINE MIR -62 146 45 244 307 20 10 chr12 117212389 117212490 -26573965 + MIR SINE MIR 25 126 -136 298 277 59 10 chr12 117212708 117212809 -26573646 + MIR3 SINE MIR 54 159 -49 249 128 0 0 chr12 117213102 117213187 -26573268 + (TG)n Simple_repeat Simple_repeat 1 85 0 306 243 29 14 chr12 117213187 117213257 -26573198 + L1MCa LINE L1 1995 2065 -4361 701 190 5 5 chr12 117213288 117213506 -26572949 + (TG)n Simple_repeat Simple_repeat 1 218 0 307 283 70 58 chr12 117213680 117213849 -26572606 + MIR3 SINE MIR 7 177 -63 213 167 24 24 chr12 117213872 117213914 -26572541 + L2 LINE L2 3231 3272 0 231 36 0 0 chr12 117214011 117214039 -26572416 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 318 255 57 9 chr12 117214040 117214146 -26572309 - L2 LINE L2 -14 3299 3189 524 259 50 22 chr12 117214219 117214358 -26572097 - MIR SINE MIR -100 162 20 328 296 210 17 chr12 117214464 117214640 -26571815 + MIR SINE MIR 51 260 -2 1615 169 14 14 chr12 117214735 117215031 -26571424 + AluJb SINE Alu 1 296 -16 214 71 0 0 chr12 117215620 117215648 -26570807 + MIR SINE MIR 126 153 -109 957 103 0 7 chr12 117215732 117215868 -26570587 + AluJo SINE Alu 1 135 -177 33 0 0 0 chr12 117215868 117215901 -26570554 + AT_rich Low_complexity Low_complexity 1 33 0 460 100 0 0 chr12 117216138 117216198 -26570257 + AluY SINE Alu 190 249 -62 1155 141 48 0 chr12 117216198 117216232 -26570223 + AluSg/x SINE Alu 85 116 -196 203 0 37 0 chr12 117216232 117216259 -26570196 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1155 141 48 0 chr12 117216259 117216430 -26570025 + AluSg/x SINE Alu 116 300 -12 195 190 0 0 chr12 117217452 117217510 -26568945 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 231 309 71 12 chr12 117217547 117217631 -26568824 + MIR SINE MIR 15 103 -159 321 217 109 44 chr12 117217821 117217956 -26568499 - MIR SINE MIR -63 145 17 848 118 221 41 chr12 117217956 117218151 -26568304 - AluJo SINE Alu -13 299 70 482 302 117 10 chr12 117218695 117218900 -26567555 - MIR SINE MIR -21 241 15 1305 113 11 0 chr12 117219375 117219561 -26566894 - AluSx SINE Alu -111 201 14 21 36 0 0 chr12 117220019 117220047 -26566408 + AT_rich Low_complexity Low_complexity 1 28 0 707 210 102 0 chr12 117220163 117220330 -26566125 + LTR26E LTR ERV1 115 298 -324 360 304 0 0 chr12 117220330 117220556 -26565899 + (CTA)n Simple_repeat Simple_repeat 1 226 0 427 219 8 8 chr12 117220606 117220729 -26565726 + (CTA)n Simple_repeat Simple_repeat 3 125 0 675 276 50 17 chr12 117223258 117223439 -26563016 - MIR SINE MIR -54 208 22 197 300 62 86 chr12 117223545 117223755 -26562700 + L2 LINE L2 3006 3210 -62 544 294 99 46 chr12 117223794 117224593 -26561862 - L2 LINE L2 0 3313 2479 347 275 114 19 chr12 117224698 117224975 -26561480 - L2 LINE L2 -330 2942 2585 2970 166 48 2 chr12 117225023 117225570 -26560885 + L1MB3 LINE L1 5612 6183 0 460 269 118 78 chr12 117227036 117227281 -26559174 - MIR SINE MIR 0 262 8 22 0 0 0 chr12 117228108 117228130 -26558325 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr12 117228186 117228206 -26558249 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3438 164 8 34 chr12 117228237 117228891 -26557564 - L1MB7 LINE L1 -120 6133 5497 * 4712 131 67 42 chr12 117228888 117229625 -26556830 - L1MA9 LINE L1 0 6312 5525 1913 130 3 10 chr12 117229625 117229918 -26556537 - AluSx SINE Alu -21 291 1 4712 131 67 42 chr12 117229918 117230284 -26556171 - L1MA9 LINE L1 -787 5525 5169 2819 219 36 42 chr12 117230429 117230996 -26555459 - L1MB7 LINE L1 -1740 4475 3913 2558 42 0 7 chr12 117230996 117231303 -26555152 - AluY SINE Alu -6 305 1 2819 219 36 42 chr12 117231303 117231602 -26554853 - L1MB7 LINE L1 -2302 3913 3614 1341 235 113 24 chr12 117231599 117232293 -26554162 - L1MB7 LINE L1 -3622 2593 1860 * 858 139 0 84 chr12 117232303 117232416 -26554039 - L1M2 LINE L1 -647 5665 5569 2179 95 0 0 chr12 117232416 117232711 -26553744 + AluSg SINE Alu 1 295 -15 858 139 0 84 chr12 117232711 117232763 -26553692 - L1M2 LINE L1 -743 5569 5514 922 76 0 0 chr12 117232766 117232885 -26553570 + AluSg/x SINE Alu 176 294 -16 1065 262 119 70 chr12 117232923 117233624 -26552831 - L1ME LINE L1 -4593 1668 1003 1921 150 0 13 chr12 117233624 117233938 -26552517 - AluJb SINE Alu -2 310 1 1065 262 119 70 chr12 117233938 117234784 -26551671 - L1ME LINE L1 -5258 1003 2 427 243 159 21 chr12 117234802 117234941 -26551514 - L1ME4a LINE L1 -233 5888 5770 1978 170 36 0 chr12 117234941 117235277 -26551178 + MER7A DNA MER2_type 1 346 0 427 243 159 21 chr12 117235277 117235376 -26551079 - L1ME4a LINE L1 -351 5770 5617 408 111 0 0 chr12 117235877 117235940 -26550515 + (CA)n Simple_repeat Simple_repeat 2 64 0 229 283 33 0 chr12 117236435 117236495 -26549960 + MER102b DNA MER1_type 13 74 -267 229 322 14 13 chr12 117237821 117237925 -26548530 - MIR SINE MIR -67 141 47 830 205 0 0 chr12 117238360 117238516 -26547939 + FRAM SINE Alu 7 162 -14 1307 153 19 0 chr12 117238688 117238903 -26547552 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr12 117239514 117239536 -26546919 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr12 117239558 117239586 -26546869 + (TATG)n Simple_repeat Simple_repeat 1 28 0 317 303 164 23 chr12 117239586 117239890 -26546565 - L1ME4a LINE L1 -62 6059 5713 350 223 32 0 chr12 117241157 117241239 -26545216 + MIR3 SINE MIR 86 174 -34 1507 171 38 3 chr12 117242992 117243279 -26543176 - AluJo SINE Alu -15 297 1 1340 141 4 21 chr12 117243551 117243785 -26542670 + AluJb SINE Alu 1 230 -82 1008 164 0 11 chr12 117243786 117243969 -26542486 + AluJb SINE Alu 126 306 -6 516 237 56 147 chr12 117244707 117244930 -26541525 - MER102b DNA MER1_type -1087 341 160 2186 114 0 13 chr12 117244930 117245246 -26541209 - AluSx SINE Alu 0 312 1 516 237 56 147 chr12 117245246 117245377 -26541078 - MER102b DNA MER1_type -1268 160 19 2116 117 0 3 chr12 117245905 117246203 -26540252 - AluSx SINE Alu -15 297 1 374 274 132 0 chr12 117246317 117246423 -26540032 + MER5A DNA MER1_type 69 188 -1 979 222 30 5 chr12 117247010 117247213 -26539242 - MER58A DNA MER1_type -16 208 1 1972 101 3 3 chr12 117247636 117247922 -26538533 + AluSx SINE Alu 5 290 -22 302 326 139 0 chr12 117248450 117248622 -26537833 + MIR SINE MIR 40 235 -27 207 0 0 0 chr12 117248663 117248686 -26537769 + (T)n Simple_repeat Simple_repeat 1 23 0 350 243 0 0 chr12 117248863 117248933 -26537522 + L1MC4 LINE L1 6634 6703 -1339 538 211 28 0 chr12 117248938 117249080 -26537375 + (TATATG)n Simple_repeat Simple_repeat 5 150 0 319 337 0 0 chr12 117249082 117249171 -26537284 + L1MC4 LINE L1 6615 6703 -1339 302 224 45 0 chr12 117249155 117249222 -26537233 + L1MCa LINE L1 1995 2064 -4362 * 381 43 0 0 chr12 117249223 117249270 -26537185 + (CA)n Simple_repeat Simple_repeat 2 48 0 1064 139 12 0 chr12 117249626 117249792 -26536663 + FRAM SINE Alu 2 169 -7 231 236 111 0 chr12 117249823 117249895 -26536560 - MER94 DNA DNA -36 98 19 1987 131 0 3 chr12 117250452 117250750 -26535705 + AluSx SINE Alu 1 297 -15 271 242 32 0 chr12 117251833 117251895 -26534560 - MER5B DNA MER1_type -61 117 54 2172 95 3 3 chr12 117252349 117252643 -26533812 + AluSx SINE Alu 1 294 -18 3346 179 157 11 chr12 117253412 117254150 -26532305 + MER6 DNA MER2_type 1 846 -19 1899 131 3 7 chr12 117255312 117255602 -26530853 + AluSg SINE Alu 1 289 -21 191 349 53 23 chr12 117258794 117258926 -26527529 - MIR3 SINE MIR -31 177 42 1543 198 27 7 chr12 117258924 117259222 -26527233 - AluJo SINE Alu -8 304 1 806 135 8 8 chr12 117259234 117259360 -26527095 - FLAM_C SINE Alu -17 126 1 1188 247 41 78 chr12 117259816 117260301 -26526154 + L1MDb LINE L1 795 1261 -5148 1808 156 3 3 chr12 117260314 117260615 -26525840 + AluJo SINE Alu 1 301 -11 282 317 65 8 chr12 117260621 117260744 -26525711 + MIR3 SINE MIR 48 177 -31 546 287 63 21 chr12 117262227 117262464 -26523991 - MIR SINE MIR -8 254 8 3362 137 31 77 chr12 117262665 117263339 -26523116 + L1MB7 LINE L1 5521 6163 -21 306 261 11 0 chr12 117264261 117264353 -26522102 + HAL1 LINE L1 51 143 -2364 1470 249 100 35 chr12 117264519 117265211 -26521244 + HAL1 LINE L1 501 1237 -1270 1343 276 81 23 chr12 117265218 117265786 -26520669 + HAL1 LINE L1 1894 2494 -13 239 262 83 24 chr12 117266377 117266461 -26519994 - MIR SINE MIR -68 194 106 910 254 30 45 chr12 117268430 117268765 -26517690 - MER102b DNA MER1_type -11 330 1 248 197 45 45 chr12 117268854 117268920 -26517535 - MIR3 SINE MIR -52 156 91 303 333 146 18 chr12 117269560 117269731 -26516724 + MIR SINE MIR 52 244 -18 224 290 40 40 chr12 117270044 117270144 -26516311 + MER5A DNA MER1_type 16 115 -74 952 192 62 10 chr12 117270144 117270352 -26516103 - MER20 DNA MER1_type 0 219 1 347 247 150 17 chr12 117270399 117270699 -26515756 + L1ME3A LINE L1 5170 5506 -660 295 317 109 4 chr12 117270991 117271221 -26515234 + L1ME3A LINE L1 5687 5940 -230 534 210 217 0 chr12 117271290 117271433 -26515022 + MER5B DNA MER1_type 3 176 -2 414 296 98 30 chr12 117272177 117272380 -26514075 - MIR SINE MIR -12 250 34 291 292 104 42 chr12 117273056 117273200 -26513255 + MIR SINE MIR 47 199 -63 1841 146 0 7 chr12 117273205 117273506 -26512949 + AluJo SINE Alu 1 299 -13 2506 47 0 0 chr12 117274521 117274819 -26511636 - AluY SINE Alu -13 298 1 318 277 59 8 chr12 117274951 117275070 -26511385 - MIR SINE MIR -91 171 47 227 330 19 48 chr12 117275178 117275281 -26511174 - MIR SINE MIR -73 135 35 * 358 191 15 0 chr12 117275272 117275340 -26511115 + L2 LINE L2 2990 3058 -255 627 269 117 35 chr12 117275648 117275930 -26510525 + MER102b DNA MER1_type 18 322 -19 2082 197 92 14 chr12 117276459 117276967 -26509488 + MER90 LTR ERV1 67 614 0 5028 130 78 23 chr12 117277775 117278703 -26507752 - Tigger3b DNA MER2_type -252 979 1 588 209 81 27 chr12 117278727 117278875 -26507580 - L1ME2 LINE L1 -1 6163 6008 195 292 146 11 chr12 117279167 117279256 -26507199 + MIR SINE MIR 14 114 -148 2099 111 3 0 chr12 117279650 117279948 -26506507 - AluSp SINE Alu -14 299 1 1013 98 0 0 chr12 117279950 117280082 -26506373 - AluSp SINE Alu -181 132 1 589 217 54 6 chr12 117280300 117280466 -26505989 - MER5B DNA MER1_type 0 178 5 230 322 124 8 chr12 117280803 117280924 -26505531 + MIR3 SINE MIR 40 174 -34 411 160 46 186 chr12 117280999 117281059 -26505396 + MER5B DNA MER1_type 1 68 -110 1590 158 10 26 chr12 117281059 117281363 -26505092 + AluJo SINE Alu 1 299 -13 411 160 46 186 chr12 117281363 117281496 -26504959 + MER5B DNA MER1_type 68 167 -11 652 184 76 32 chr12 117281946 117282104 -26504351 - MER5A DNA MER1_type -24 165 1 204 279 0 25 chr12 117282921 117283000 -26503455 + C-rich Low_complexity Low_complexity 1 77 0 453 255 198 16 chr12 117283904 117284096 -26502359 + MIR SINE MIR 22 248 -14 2243 72 3 0 chr12 117284366 117284659 -26501796 + AluSq SINE Alu 1 294 -19 587 230 27 9 chr12 117285249 117285416 -26501039 - MIR SINE MIR -61 147 16 197 293 145 66 chr12 117286090 117286233 -26500222 - MIR SINE MIR 0 262 91 1845 167 0 10 chr12 117286233 117286532 -26499923 + AluJo SINE Alu 1 296 -16 197 293 145 66 chr12 117286532 117286630 -26499825 - MIR SINE MIR -171 91 2 385 271 99 13 chr12 117286636 117286787 -26499668 - L1ME4a LINE L1 -26 6095 5932 993 34 0 0 chr12 117286870 117286989 -26499466 + AluY SINE Alu 180 298 -13 234 143 0 0 chr12 117286999 117287034 -26499421 + Alu SINE Alu 1 35 -268 978 156 19 0 chr12 117287041 117287201 -26499254 + AluSg/x SINE Alu 140 302 -10 317 101 89 89 chr12 117287691 117287770 -26498685 - MADE1 DNA Mariner -1 79 1 21 0 0 0 chr12 117288037 117288058 -26498397 + AT_rich Low_complexity Low_complexity 1 21 0 1631 158 34 3 chr12 117288058 117288355 -26498100 - L1PB4 LINE L1 -4 6152 5847 199 200 22 0 chr12 117288857 117288902 -26497553 + L2 LINE L2 3268 3313 0 233 283 131 0 chr12 117289857 117289956 -26496499 - MIR SINE MIR -1 261 150 2020 114 0 3 chr12 117290268 117290557 -26495898 - AluSc SINE Alu -21 288 1 22 0 0 0 chr12 117290561 117290583 -26495872 + AT_rich Low_complexity Low_complexity 1 22 0 1787 138 7 4 chr12 117290639 117290914 -26495541 - AluJb SINE Alu -26 286 11 252 329 20 46 chr12 117291145 117291297 -26495158 - L2 LINE L2 -38 3234 3087 350 256 35 0 chr12 117291302 117291388 -26495067 - MIR SINE MIR -117 145 57 320 212 242 15 chr12 117291522 117291654 -26494801 - Charlie8 DNA MER1_type -2164 253 92 207 0 0 0 chr12 117292448 117292471 -26493984 + (A)n Simple_repeat Simple_repeat 1 23 0 329 264 64 48 chr12 117293015 117293140 -26493315 - MLT1K LTR MaLR -319 269 143 303 340 27 37 chr12 117293608 117293796 -26492659 + MIR3 SINE MIR 19 204 -4 1076 204 51 42 chr12 117293866 117294120 -26492335 - MIR SINE MIR 0 262 8 264 256 91 170 chr12 117294962 117295368 -26491087 - L2 LINE L2 0 3272 2899 203 152 0 0 chr12 117296387 117296420 -26490035 - MIR SINE MIR -71 191 159 494 202 167 0 chr12 117296687 117296801 -26489654 - FLAM_A SINE Alu 0 133 1 267 325 37 31 chr12 117297618 117297781 -26488674 - MER103 DNA DNA 0 166 3 866 188 65 6 chr12 117297867 117298037 -26488418 - MER58A DNA MER1_type 0 224 45 1117 186 25 0 chr12 117298063 117298267 -26488188 - MER3 DNA MER1_type 0 209 1 1004 157 63 47 chr12 117298303 117298327 -26488128 - MER33 DNA MER1_type -2319 266 244 1758 157 16 13 chr12 117298327 117298633 -26487822 + AluJb SINE Alu 1 307 -5 1004 157 63 47 chr12 117298633 117298863 -26487592 - MER33 DNA MER1_type -2341 244 8 712 278 71 0 chr12 117299624 117299693 -26486762 - MIR SINE MIR -31 231 168 1675 146 26 33 chr12 117299693 117299995 -26486460 - AluJo SINE Alu -12 300 1 712 278 71 0 chr12 117299995 117300123 -26486332 - MIR SINE MIR -94 168 20 4915 165 41 15 chr12 117301237 117301348 -26485107 - L1MB7 LINE L1 0 6184 6077 3776 92 2 10 chr12 117301348 117301861 -26484594 - MER9 LTR ERVK 0 511 3 4915 165 41 15 chr12 117301861 117302949 -26483506 - L1MB7 LINE L1 -107 6077 4960 392 223 114 5 chr12 117302975 117303177 -26483278 - L1ME4a LINE L1 -1 6120 5897 317 282 17 8 chr12 117303269 117303386 -26483069 - L1ME3A LINE L1 -64 6106 5989 379 233 68 34 chr12 117303393 117303539 -26482916 - L1ME3A LINE L1 -215 5906 5756 1572 151 50 7 chr12 117304688 117304966 -26481489 - AluJb SINE Alu -7 305 16 281 244 198 51 chr12 117305132 117305329 -26481126 - MIR SINE MIR -1 261 36 28 48 0 0 chr12 117305772 117305814 -26480641 + AT_rich Low_complexity Low_complexity 1 42 0 366 239 82 52 chr12 117306564 117306698 -26479757 + MIR SINE MIR 90 227 -35 1383 201 6 43 chr12 117307507 117307831 -26478624 - AluJo SINE Alu 0 312 1 25 31 0 0 chr12 117309430 117309462 -26476993 + AT_rich Low_complexity Low_complexity 1 32 0 330 225 38 0 chr12 117309484 117309564 -26476891 - L1ME4a LINE L1 -259 5862 5780 509 291 99 11 chr12 117309791 117309973 -26476482 - L2 LINE L2 0 3313 3116 387 302 43 43 chr12 117309976 117310003 -26476452 - L2 LINE L2 -710 2604 2578 1023 191 27 32 chr12 117310003 117310223 -26476232 - MER20 DNA MER1_type 0 219 1 387 302 43 43 chr12 117310223 117310430 -26476025 - L2 LINE L2 -735 2579 2370 193 275 58 58 chr12 117310493 117310631 -26475824 - L2 LINE L2 -1076 2238 2101 1899 52 0 21 chr12 117310674 117310907 -26475548 - AluY SINE Alu -14 297 70 645 244 0 67 chr12 117312115 117312204 -26474251 + MER58A DNA MER1_type 1 76 -265 2372 89 3 10 chr12 117312204 117312518 -26473937 - AluSq SINE Alu -1 312 1 645 244 0 67 chr12 117312518 117312592 -26473863 + MER58A DNA MER1_type 76 153 -71 961 181 145 104 chr12 117312592 117312957 -26473498 + MER57A LTR ERV1 1 380 -23 331 213 0 13 chr12 117312963 117313038 -26473417 + MER58A DNA MER1_type 151 224 0 794 270 99 0 chr12 117313039 117313261 -26473194 + MIR SINE MIR 18 261 -1 670 270 71 27 chr12 117313925 117314320 -26472135 + MIR SINE MIR 5 262 0 195 208 0 62 chr12 117314691 117314739 -26471716 - L2 LINE L2 0 3272 3228 666 215 19 6 chr12 117314951 117315109 -26471346 - L1MC5 LINE L1 -53 7908 7749 193 56 28 28 chr12 117315110 117315146 -26471309 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 1156 83 0 0 chr12 117315146 117315302 -26471153 - L1PA8 LINE L1 -24 6148 5993 297 177 0 0 chr12 117315306 117315368 -26471087 - L1MC5 LINE L1 -203 7758 7697 796 258 62 0 chr12 117316804 117317013 -26469442 - MER58A DNA MER1_type 0 224 3 341 344 206 10 chr12 117318656 117319054 -26467401 - L3 LINE CR1 -10 1567 1092 596 230 170 0 chr12 117319171 117319306 -26467149 + MER119 DNA MER1_type 56 213 -370 695 214 90 15 chr12 117319307 117319508 -26466947 + MER119 DNA MER1_type 368 583 0 194 175 0 25 chr12 117320194 117320234 -26466221 + MIR SINE MIR 126 164 -98 2666 55 0 0 chr12 117320773 117321080 -26465375 - AluY SINE Alu -4 307 1 2375 104 3 0 chr12 117321227 117321536 -26464919 - AluSp SINE Alu -3 310 1 2492 92 0 16 chr12 117322027 117322344 -26464111 - AluSx SINE Alu 0 312 1 203 292 222 0 chr12 117323287 117323359 -26463096 - MER91B DNA MER1_type -16 174 87 267 315 39 39 chr12 117323373 117323503 -26462952 - MER91B DNA MER1_type -60 130 1 327 193 216 0 chr12 117323959 117324047 -26462408 - Charlie8 DNA MER1_type -1914 503 397 281 311 158 50 chr12 117324129 117324351 -26462104 - Charlie8 DNA MER1_type -2171 246 1 329 324 67 34 chr12 117324959 117325138 -26461317 - MIR3 SINE MIR -6 202 18 373 329 148 35 chr12 117325810 117326263 -26460192 + L3 LINE CR1 327 830 -747 215 331 117 6 chr12 117326384 117326547 -26459908 + L2 LINE L2 2637 2817 -497 228 67 0 0 chr12 117326611 117326641 -26459814 + (T)n Simple_repeat Simple_repeat 1 30 0 410 341 36 6 chr12 117327572 117327739 -26458716 - MIR SINE MIR -45 217 46 223 304 48 40 chr12 117327924 117328049 -26458406 + MIR SINE MIR 67 192 -70 231 171 0 0 chr12 117328684 117328725 -26457730 + MIR SINE MIR 110 150 -112 296 221 0 0 chr12 117331867 117331943 -26454512 - L1MC/D LINE L1 -361 5809 5757 2511 71 0 0 chr12 117332458 117332753 -26453702 + AluSg SINE Alu 1 295 -15 203 170 0 38 chr12 117334137 117334190 -26452265 + CT-rich Low_complexity Low_complexity 3 53 0 2254 112 16 0 chr12 117334439 117334744 -26451711 + AluSq SINE Alu 1 310 -3 2311 108 3 10 chr12 117334744 117335058 -26451397 + AluSx SINE Alu 1 312 0 742 203 0 0 chr12 117342884 117343017 -26443438 - FLAM_C SINE Alu 0 133 1 2362 77 17 0 chr12 117343570 117343868 -26442587 - AluY SINE Alu -8 303 1 284 285 161 31 chr12 117344251 117344444 -26442011 + MIR SINE MIR 21 238 -24 2270 116 0 13 chr12 117344821 117345132 -26441323 + AluSx SINE Alu 1 307 -5 343 316 32 19 chr12 117345294 117345452 -26441003 + MIR SINE MIR 21 180 -82 1770 171 0 40 chr12 117346060 117346382 -26440073 - AluJb SINE Alu -3 309 1 437 336 124 13 chr12 117347159 117347385 -26439070 + MIR SINE MIR 2 252 -10 1193 221 86 34 chr12 117347481 117347925 -26438530 - MLT1C LTR MaLR 0 467 1 304 305 12 0 chr12 117348041 117348123 -26438332 - MER117 DNA MER1_type 0 197 115 328 292 128 15 chr12 117348228 117348343 -26438112 - MIR SINE MIR 0 262 161 1861 197 89 2 chr12 117348343 117348770 -26437685 + MLT1C LTR MaLR 4 467 0 328 292 128 15 chr12 117348770 117348849 -26437606 - MIR SINE MIR -101 161 46 387 279 61 18 chr12 117348869 117349034 -26437421 - Charlie8 DNA MER1_type -2198 219 48 383 262 16 48 chr12 117349291 117349417 -26437038 + L3 LINE CR1 987 1108 -469 2093 104 28 3 chr12 117349424 117349712 -26436743 + AluSx SINE Alu 1 295 -17 232 326 63 0 chr12 117350811 117350906 -26435549 - MIR SINE MIR -116 146 46 277 296 72 16 chr12 117351167 117351292 -26435163 - L2 LINE L2 -4 3268 3137 368 270 22 22 chr12 117351354 117351491 -26434964 - MIR SINE MIR -104 158 22 208 300 0 0 chr12 117351494 117351564 -26434891 - L2 LINE L2 -279 2993 2924 280 152 30 45 chr12 117352507 117352573 -26433882 - L2 LINE L2 -1 3312 3248 1943 154 10 3 chr12 117352584 117352877 -26433578 - AluJb SINE Alu -17 295 1 296 329 193 0 chr12 117353085 117353246 -26433209 + MIR SINE MIR 13 204 -58 259 283 0 0 chr12 117353310 117353363 -26433092 + (CACG)n Simple_repeat Simple_repeat 4 56 0 1604 169 13 7 chr12 117353432 117353734 -26432721 + MER90 LTR ERV1 307 610 -4 464 283 111 39 chr12 117355084 117355444 -26431011 - L1ME4a LINE L1 -30 6091 5706 207 0 0 0 chr12 117355457 117355480 -26430975 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 207 125 0 0 chr12 117355519 117355559 -26430896 + (A)n Simple_repeat Simple_repeat 1 40 0 384 326 34 0 chr12 117355583 117355730 -26430725 - L1ME4a LINE L1 -460 5661 5510 1652 167 14 20 chr12 117356514 117356807 -26429648 - AluJo SINE Alu -21 291 1 359 354 56 6 chr12 117356965 117357126 -26429329 + MIR SINE MIR 22 190 -72 480 231 75 46 chr12 117357258 117357431 -26429024 + MIR SINE MIR 81 258 -4 * 698 246 38 38 chr12 117357428 117357664 -26428791 + MIR SINE MIR 25 260 -2 2291 105 0 16 chr12 117357691 117357995 -26428460 + AluSx SINE Alu 2 300 -12 2453 87 0 3 chr12 117357995 117358294 -26428161 + AluSx SINE Alu 1 298 -14 296 273 102 11 chr12 117358297 117358385 -26428070 + MIR3 SINE MIR 105 200 -8 213 314 110 0 chr12 117358647 117358765 -26427690 - MIR SINE MIR -89 173 43 478 291 60 39 chr12 117358768 117359002 -26427453 - MIR SINE MIR 0 262 24 307 322 11 0 chr12 117360059 117360146 -26426309 + MIR SINE MIR 154 241 -21 485 258 46 0 chr12 117360261 117360412 -26426043 + MER96B DNA MER1_type? 19 176 -241 24 0 0 0 chr12 117361015 117361039 -26425416 + AT_rich Low_complexity Low_complexity 1 24 0 1834 113 0 39 chr12 117361143 117361426 -26425029 - AluSx SINE Alu -5 307 36 209 313 30 0 chr12 117361757 117361824 -26424631 + L2 LINE L2 3203 3271 -1 405 0 0 0 chr12 117362516 117362561 -26423894 + (CA)n Simple_repeat Simple_repeat 1 45 0 307 248 163 35 chr12 117363348 117363489 -26422966 - MER5A DNA MER1_type -2 187 29 614 172 53 53 chr12 117363490 117363659 -26422796 - MER20 DNA MER1_type -14 205 37 522 371 38 4 chr12 117364615 117364852 -26421603 + L2 LINE L2 3026 3270 -2 294 331 30 8 chr12 117365847 117365980 -26420475 - L1MC/D LINE L1 -2000 5808 5673 414 345 39 20 chr12 117366072 117366275 -26420180 + MIR SINE MIR 4 210 -52 229 265 60 24 chr12 117366619 117366702 -26419753 + L2 LINE L2 3155 3240 -73 362 99 0 66 chr12 117366802 117366893 -26419562 + (TCTCCC)n Simple_repeat Simple_repeat 3 87 0 2517 118 83 8 chr12 117367840 117368238 -26418217 + MSTA LTR MaLR 1 428 0 267 311 81 34 chr12 117368909 117369057 -26417398 + MIR SINE MIR 10 164 -98 374 321 130 5 chr12 117369086 117369280 -26417175 + MIR SINE MIR 11 227 -35 272 295 74 68 chr12 117369328 117369518 -26416937 - L2 LINE L2 -74 3198 3008 781 209 136 0 chr12 117369966 117370157 -26416298 - MER20 DNA MER1_type -2 217 1 1671 180 0 38 chr12 117370247 117370563 -26415892 - AluJb SINE Alu -8 304 1 1563 191 40 0 chr12 117370563 117370835 -26415620 - AluJb SINE Alu -29 283 1 330 235 12 0 chr12 117370835 117370916 -26415539 - MIR SINE MIR -114 148 67 186 321 37 25 chr12 117371427 117371508 -26414947 + MIR SINE MIR 35 116 -146 253 289 0 12 chr12 117371618 117371701 -26414754 - L2 LINE L2 -199 3073 2992 340 241 19 9 chr12 117371787 117371895 -26414560 - LTR33 LTR ERVL 0 521 413 397 296 50 45 chr12 117372050 117372229 -26414226 - LTR33 LTR ERVL -341 180 1 858 95 0 0 chr12 117372943 117373059 -26413396 + AluSp/q SINE Alu 189 304 -9 650 290 41 14 chr12 117373062 117373283 -26413172 - MIR SINE MIR -1 261 35 1884 154 3 23 chr12 117373506 117373805 -26412650 - AluJb SINE Alu -19 293 1 940 158 0 0 chr12 117373840 117373979 -26412476 - U4 snRNA snRNA -2 143 5 736 289 20 20 chr12 117373988 117374234 -26412221 + MLT1I LTR MaLR 164 409 0 1911 137 18 3 chr12 117374824 117375109 -26411346 - AluSx SINE Alu -18 294 6 740 230 25 10 chr12 117375120 117375320 -26411135 - L1ME3A LINE L1 -5 6165 5963 1906 194 60 29 chr12 117375488 117375848 -26410607 + MER90 LTR ERV1 1 381 -233 1906 137 24 3 chr12 117375848 117376140 -26410315 + AluSx SINE Alu 1 298 -14 1906 194 60 29 chr12 117376140 117376263 -26410192 + MER90 LTR ERV1 381 499 -115 460 163 0 33 chr12 117376263 117376355 -26410100 - L1MB3 LINE L1 0 6183 6095 1741 169 0 23 chr12 117376457 117376759 -26409696 + AluJo SINE Alu 6 300 -12 390 374 48 48 chr12 117376825 117377105 -26409350 - L1ME4a LINE L1 -11 6110 5828 2109 122 0 26 chr12 117377105 117377417 -26409038 - AluSx SINE Alu -6 306 3 390 374 48 48 chr12 117377417 117377449 -26409006 - L1ME4a LINE L1 -292 5829 5798 190 274 0 0 chr12 117377806 117377857 -26408598 + L2 LINE L2 3263 3313 0 * 374 319 63 46 chr12 117377852 117378090 -26408365 - MIR SINE MIR -14 248 7 1698 171 3 26 chr12 117378096 117378419 -26408036 - AluJb SINE Alu 0 312 1 864 117 7 36 chr12 117378424 117378561 -26407894 - FRAM SINE Alu -18 158 26 207 143 41 0 chr12 117379692 117379741 -26406714 + (CGG)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr12 117379747 117379775 -26406680 + GC_rich Low_complexity Low_complexity 1 28 0 315 272 56 32 chr12 117379891 117380016 -26406439 + MIR SINE MIR 86 213 -49 508 286 27 16 chr12 117380019 117380204 -26406251 + L1MC/D LINE L1 5567 5753 -2055 600 302 33 19 chr12 117380289 117380501 -26405954 - MIR SINE MIR 0 262 48 200 269 32 54 chr12 117380557 117380650 -26405805 + MIR3 SINE MIR 114 204 -4 482 222 52 33 chr12 117380956 117381109 -26405346 - L2 LINE L2 -1089 2225 2070 414 267 71 26 chr12 117381108 117381290 -26405165 - MIR SINE MIR -59 203 19 * 1344 132 151 23 chr12 117381290 117381555 -26404900 - AluJb SINE Alu -13 299 1 414 267 71 26 chr12 117381555 117381570 -26404885 - MIR SINE MIR -243 19 6 23 0 0 0 chr12 117382158 117382181 -26404274 + AT_rich Low_complexity Low_complexity 1 23 0 236 290 54 11 chr12 117382186 117382279 -26404176 + L1MC/D LINE L1 5814 5910 -1898 2338 94 0 0 chr12 117382456 117382755 -26403700 + AluSx SINE Alu 1 299 -13 772 162 0 49 chr12 117383342 117383484 -26402971 - AluJo SINE Alu -177 135 1 225 156 78 47 chr12 117383859 117383923 -26402532 + MIR SINE MIR 59 124 -84 819 173 8 0 chr12 117384132 117384259 -26402196 - FLAM_A SINE Alu -1 132 5 199 231 26 0 chr12 117384268 117384307 -26402148 - L2 LINE L2 -11 3302 3263 * 675 271 72 25 chr12 117384273 117384509 -26401946 - MIR SINE MIR -10 252 6 180 97 0 0 chr12 117384961 117384992 -26401463 + (TG)n Simple_repeat Simple_repeat 2 32 0 1986 159 0 0 chr12 117385005 117385307 -26401148 - AluJb SINE Alu -10 302 1 670 255 110 10 chr12 117385311 117385511 -26400944 - MIR SINE MIR -6 256 37 1827 154 14 0 chr12 117385984 117386270 -26400185 - AluJb SINE Alu -22 290 1 293 293 72 50 chr12 117386764 117386986 -26399469 - L2 LINE L2 -160 3112 2886 613 256 37 11 chr12 117387469 117387660 -26398795 - MIR SINE MIR -59 203 8 216 0 0 0 chr12 117388146 117388170 -26398285 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 724 95 11 0 chr12 117388179 117388314 -26398141 - AluSg/x SINE Alu 0 325 190 255 31 0 0 chr12 117388471 117388503 -26397952 + (CACCC)n Simple_repeat Simple_repeat 4 35 0 181 352 77 33 chr12 117388637 117388819 -26397636 + L2 LINE L2 2823 3012 -260 189 0 0 0 chr12 117388881 117388902 -26397553 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5908 22 0 0 chr12 117388965 117389631 -26396824 - L1PA3 LINE L1 0 6155 5490 468 229 110 8 chr12 117389713 117389831 -26396624 + L2 LINE L2 3184 3313 0 490 296 51 59 chr12 117389854 117390107 -26396348 + MIR SINE MIR 12 262 0 462 274 51 56 chr12 117390056 117390271 -26396184 - MIR SINE MIR -17 245 32 * 378 301 108 17 chr12 117390287 117390470 -26395985 - MIR SINE MIR -20 242 37 2240 98 0 0 chr12 117390470 117390765 -26395690 + AluSq SINE Alu 1 295 -18 378 301 108 17 chr12 117390765 117390805 -26395650 - MIR SINE MIR -225 37 2 370 244 0 0 chr12 117391286 117391372 -26395083 - MIR SINE MIR -116 146 61 1925 91 94 4 chr12 117391372 117391648 -26394807 + AluSg SINE Alu 1 301 -9 311 306 32 57 chr12 117392144 117392268 -26394187 + MER5A DNA MER1_type 69 189 0 844 169 120 0 chr12 117393682 117393865 -26392590 - MER20 DNA MER1_type 0 219 15 219 333 49 0 chr12 117394198 117394279 -26392176 - L2 LINE L2 -1 3271 3187 273 286 89 27 chr12 117394409 117394521 -26391934 + MIR3 SINE MIR 37 155 -53 797 296 143 18 chr12 117394574 117395023 -26391432 - L2 LINE L2 0 3313 2809 256 383 77 5 chr12 117396136 117396332 -26390123 + L2 LINE L2 2849 3058 -214 196 319 22 44 chr12 117396330 117396421 -26390034 + L2 LINE L2 3184 3272 0 * 182 286 0 0 chr12 117397618 117397660 -26388795 - L2 LINE L2 -7 3306 3265 180 327 40 40 chr12 117397717 117397818 -26388637 + MIR SINE MIR 7 107 -155 1493 167 117 0 chr12 117397834 117398098 -26388357 + AluJb SINE Alu 4 298 -14 570 229 81 32 chr12 117398441 117398637 -26387818 - MIR SINE MIR -50 212 2 245 196 0 0 chr12 117398613 117398659 -26387796 - L2 LINE L2 -1 3312 3267 * 462 235 44 8 chr12 117399357 117399505 -26386950 + MIR SINE MIR 17 168 -62 2079 113 20 10 chr12 117399584 117399885 -26386570 - AluSx SINE Alu -8 304 1 418 280 49 7 chr12 117399885 117400028 -26386427 - MIR SINE MIR -97 165 17 598 251 25 0 chr12 117400310 117400473 -26385982 - MLT1K LTR MaLR -2 586 420 355 301 84 0 chr12 117400572 117400715 -26385740 - MLT1K LTR MaLR -330 258 104 473 249 101 3 chr12 117401129 117401300 -26385155 + MIR SINE MIR 42 227 -35 257 258 48 6 chr12 117401623 117401726 -26384729 + CT-rich Low_complexity Low_complexity 1 174 0 658 321 78 0 chr12 117401866 117402084 -26384371 - MIR SINE MIR -11 251 17 539 320 140 0 chr12 117403968 117404190 -26382265 - MIR SINE MIR 0 262 10 240 299 78 0 chr12 117404266 117404343 -26382112 - MER5B DNA MER1_type -81 97 15 439 231 109 58 chr12 117404727 117404883 -26381572 - MER5B DNA MER1_type 0 178 15 1100 108 0 30 chr12 117404888 117405054 -26381401 + FRAM SINE Alu 7 167 -9 784 287 15 5 chr12 117405126 117405328 -26381127 + MIR SINE MIR 58 261 -1 2127 105 7 3 chr12 117405739 117406033 -26380422 - AluSx SINE Alu -17 295 1 205 229 16 16 chr12 117406332 117406393 -26380062 - MIR SINE MIR -182 80 20 341 271 282 0 chr12 117406412 117406540 -26379915 - L1ME4a LINE L1 -2 6119 6028 243 0 0 0 chr12 117406540 117406567 -26379888 + (TG)n Simple_repeat Simple_repeat 2 28 0 341 271 282 0 chr12 117406567 117406626 -26379829 - L1ME4a LINE L1 -93 6028 5879 234 0 0 0 chr12 117406784 117406810 -26379645 + (CA)n Simple_repeat Simple_repeat 2 27 0 712 283 74 4 chr12 117406940 117407170 -26379285 - MIR SINE MIR -14 248 3 462 286 16 16 chr12 117407520 117407646 -26378809 - MIR3 SINE MIR -8 200 75 278 281 58 50 chr12 117407683 117407822 -26378633 + MIR3 SINE MIR 3 142 -66 192 343 29 0 chr12 117407823 117407893 -26378562 - MIR SINE MIR -36 226 155 346 284 158 16 chr12 117407895 117408085 -26378370 - MER46C DNA MER2_type 0 338 122 2096 135 0 0 chr12 117408111 117408415 -26378040 - AluJb SINE Alu -8 304 1 259 257 178 20 chr12 117408488 117408589 -26377866 - MIR SINE MIR -109 153 37 1897 134 16 10 chr12 117409181 117409487 -26376968 - AluJo SINE Alu 0 312 5 265 271 52 21 chr12 117409698 117409794 -26376661 - L2 LINE L2 -4 3268 3170 390 225 90 20 chr12 117409848 117410019 -26376436 - MIR3 SINE MIR -62 146 1 271 243 0 14 chr12 117410127 117410201 -26376254 + MIR SINE MIR 78 150 -58 407 296 8 16 chr12 117410263 117410388 -26376067 + MIR SINE MIR 28 151 -111 1823 132 7 7 chr12 117410418 117410727 -26375728 + AluJb SINE Alu 1 309 0 335 271 178 0 chr12 117410765 117410883 -26375572 - MIR SINE MIR -97 165 27 339 131 238 12 chr12 117411334 117411418 -26375037 - MIR SINE MIR -120 142 40 232 225 28 42 chr12 117411708 117411779 -26374676 + MIR SINE MIR 74 143 -65 319 238 38 12 chr12 117412010 117412090 -26374365 + MLT1K LTR MaLR 167 248 -340 386 274 105 58 chr12 117412115 117412305 -26374150 + MLT1K LTR MaLR 359 557 -31 1784 179 0 0 chr12 117412826 117413122 -26373333 - AluJo SINE Alu -16 296 1 350 231 65 19 chr12 117413124 117413232 -26373223 - MIR SINE MIR -114 148 36 465 267 40 67 chr12 117414588 117414813 -26371642 + L2 LINE L2 2871 3089 -183 2050 142 0 0 chr12 117415080 117415383 -26371072 - AluSx SINE Alu -9 303 1 3202 129 113 44 chr12 117415404 117415879 -26370576 - L1MB3 LINE L1 -3 6180 5642 2140 116 3 0 chr12 117415879 117416180 -26370275 + AluSx SINE Alu 1 302 -10 3202 129 113 44 chr12 117416180 117416385 -26370070 - L1MB3 LINE L1 -541 5642 5453 207 0 0 0 chr12 117417003 117417026 -26369429 + (TC)n Simple_repeat Simple_repeat 2 24 0 2221 113 0 0 chr12 117417026 117417327 -26369128 - AluSx SINE Alu -11 301 1 1678 178 0 16 chr12 117417363 117417667 -26368788 - AluJo SINE Alu -13 299 1 231 67 0 0 chr12 117417668 117417698 -26368757 - Alu SINE Alu -187 115 86 376 198 93 0 chr12 117418441 117418527 -26367928 + MIR SINE MIR 53 146 -116 1657 139 160 79 chr12 117418527 117418852 -26367603 - MLT1D LTR MaLR 0 505 135 1752 142 20 43 chr12 117418852 117419155 -26367300 - AluJo SINE Alu -15 297 2 1657 139 160 79 chr12 117419155 117419261 -26367194 - MLT1D LTR MaLR -370 135 39 254 128 0 0 chr12 117419408 117419447 -26367008 + MIR SINE MIR 110 148 -114 428 233 84 70 chr12 117419770 117419985 -26366470 - MLT1K LTR MaLR -217 371 154 2161 79 4 0 chr12 117420217 117420497 -26365958 + AluSc SINE Alu 14 294 -15 552 250 6 67 chr12 117420533 117420697 -26365758 + MIR SINE MIR 88 241 -21 234 97 14 0 chr12 117420980 117421019 -26365436 + MIR SINE MIR 106 144 -118 2157 118 0 0 chr12 117423177 117423483 -26362972 + AluSx SINE Alu 1 306 -6 291 345 92 0 chr12 117423511 117423653 -26362802 + MIR SINE MIR 60 214 -48 594 244 22 7 chr12 117424043 117424178 -26362277 + MIR SINE MIR 30 166 -96 780 134 49 28 chr12 117424250 117424392 -26362063 - MER46A DNA MER2_type -91 145 1 334 239 87 0 chr12 117424975 117425067 -26361388 + MIR SINE MIR 45 144 -64 1612 173 14 4 chr12 117425298 117425575 -26360880 + AluJo SINE Alu 14 293 -19 260 353 34 8 chr12 117425936 117426055 -26360400 - MIR SINE MIR -113 149 28 535 271 85 113 chr12 117426340 117426592 -26359863 - L1ME4a LINE L1 -37 6084 5827 2373 80 0 0 chr12 117426592 117426892 -26359563 - AluSx SINE Alu -12 300 1 535 271 85 113 chr12 117426892 117427366 -26359089 - L1ME4a LINE L1 -294 5827 5378 198 209 0 0 chr12 117427545 117427588 -26358867 + (TG)n Simple_repeat Simple_repeat 1 43 0 216 158 0 0 chr12 117427662 117427700 -26358755 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 167 0 0 chr12 117427864 117427906 -26358549 + (TG)n Simple_repeat Simple_repeat 1 42 0 216 226 0 0 chr12 117427983 117428045 -26358410 + (TG)n Simple_repeat Simple_repeat 1 62 0 280 273 0 0 chr12 117428114 117428180 -26358275 + (TG)n Simple_repeat Simple_repeat 1 66 0 243 217 0 0 chr12 117428241 117428301 -26358154 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 0 0 0 chr12 117428361 117428392 -26358063 + (TG)n Simple_repeat Simple_repeat 1 31 0 368 284 37 0 chr12 117428787 117428896 -26357559 - Charlie8 DNA MER1_type -2154 263 151 999 170 0 0 chr12 117428979 117429138 -26357317 - AluJb SINE Alu -9 303 145 225 262 83 0 chr12 117429377 117429461 -26356994 - MIR SINE MIR -78 184 94 279 54 0 0 chr12 117429877 117429914 -26356541 + (CAGGG)n Simple_repeat Simple_repeat 3 39 0 339 301 6 33 chr12 117430156 117430315 -26356140 - MIR SINE MIR -67 141 45 220 280 0 67 chr12 117430822 117430897 -26355558 - MIR SINE MIR -86 176 107 469 283 133 0 chr12 117431468 117431634 -26354821 + MIR SINE MIR 73 260 -2 233 184 294 55 chr12 117431813 117431922 -26354533 - MER117 DNA MER1_type -32 165 31 233 390 41 8 chr12 117432014 117432137 -26354318 + L2 LINE L2 3162 3288 -25 246 272 117 29 chr12 117432218 117432321 -26354134 - MIR SINE MIR -72 190 79 983 188 109 0 chr12 117432341 117432543 -26353912 + MER58A DNA MER1_type 1 224 0 252 286 0 0 chr12 117432736 117432806 -26353649 - MIR SINE MIR -14 248 179 942 158 180 11 chr12 117432811 117432994 -26353461 - MER58C DNA MER1_type 0 215 2 355 298 40 0 chr12 117433086 117433210 -26353245 - MIR SINE MIR -84 178 50 451 195 195 8 chr12 117433665 117433783 -26352672 - MIR SINE MIR -10 252 113 416 336 46 14 chr12 117433972 117434189 -26352266 - MIR SINE MIR -19 243 20 285 248 10 40 chr12 117434638 117434739 -26351716 + CT-rich Low_complexity Low_complexity 4 101 0 694 250 134 5 chr12 117435520 117435744 -26350711 + MIR SINE MIR 10 262 0 224 125 25 0 chr12 117435906 117435946 -26350509 - MIR SINE MIR -117 145 105 183 310 42 0 chr12 117435977 117436048 -26350407 + MIR SINE MIR 177 250 -12 1913 108 0 0 chr12 117436618 117436878 -26349577 - AluSg SINE Alu -16 294 35 229 311 87 10 chr12 117437050 117437153 -26349302 - MIR SINE MIR -117 145 35 190 197 66 16 chr12 117437249 117437310 -26349145 + MER5A DNA MER1_type 37 100 -89 287 311 48 0 chr12 117437372 117437475 -26348980 + MIR SINE MIR 23 130 -78 316 203 78 78 chr12 117438080 117438208 -26348247 + MIR SINE MIR 30 157 -105 2253 101 0 0 chr12 117438620 117438918 -26347537 + AluSx SINE Alu 1 298 -14 358 308 18 0 chr12 117438992 117439116 -26347339 + MIR SINE MIR 32 156 -61 401 286 32 63 chr12 117439984 117440173 -26346282 - MIR SINE MIR -21 241 59 2031 132 44 53 chr12 117440248 117440449 -26346006 + MER1B DNA MER1_type 1 199 -2511 2027 128 13 3 chr12 117440449 117440754 -26345701 - AluSq SINE Alu -5 308 1 2031 132 44 53 chr12 117440754 117440892 -26345563 + MER1B DNA MER1_type 199 337 0 571 225 133 7 chr12 117440936 117441087 -26345368 - MER3 DNA MER1_type -26 183 14 241 354 169 6 chr12 117441284 117441462 -26344993 + L3 LINE CR1 1370 1576 -1 2045 114 16 22 chr12 117441464 117441779 -26344676 - AluSq SINE Alu 0 313 1 260 340 0 0 chr12 117441859 117441954 -26344501 + MIR3 SINE MIR 79 174 -34 386 271 25 17 chr12 117441967 117442085 -26344370 + MIR SINE MIR 73 191 -71 360 245 14 7 chr12 117442420 117442559 -26343896 + (CA)n Simple_repeat Simple_repeat 1 140 0 442 296 19 19 chr12 117443071 117443233 -26343222 + MIR SINE MIR 60 221 -41 194 132 79 0 chr12 117443343 117443381 -26343074 - MIR SINE MIR -9 253 213 462 311 34 4 chr12 117443516 117443681 -26342774 - MIR3 SINE MIR -62 146 1 1831 175 0 0 chr12 117443745 117444053 -26342402 + AluJo SINE Alu 3 310 -2 232 314 65 39 chr12 117444247 117444400 -26342055 + MIR3 SINE MIR 17 173 -35 398 315 185 19 chr12 117444469 117444957 -26341498 + L2 LINE L2 2674 3256 -16 191 250 83 0 chr12 117445022 117445094 -26341361 + L2 LINE L2 2977 3054 -218 646 251 66 16 chr12 117445584 117445767 -26340688 + MIR SINE MIR 52 243 -19 187 356 11 23 chr12 117446631 117446718 -26339737 - MIR SINE MIR -65 143 58 294 171 46 0 chr12 117446815 117446880 -26339575 + MIR3 SINE MIR 100 168 -40 457 280 50 39 chr12 117446922 117447042 -26339413 + MIR SINE MIR 64 188 -74 1933 124 0 3 chr12 117447042 117447463 -26338992 + AluSx SINE Alu 18 312 0 457 280 50 39 chr12 117447463 117447524 -26338931 + MIR SINE MIR 188 247 -15 316 240 32 0 chr12 117448059 117448153 -26338302 - MIR SINE MIR -62 146 83 356 369 34 0 chr12 117448233 117448409 -26338046 + MIR SINE MIR 11 192 -70 228 67 0 0 chr12 117448485 117448515 -26337940 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1900 139 10 10 chr12 117448563 117448873 -26337582 + AluSx SINE Alu 2 311 -1 335 264 22 0 chr12 117449352 117449443 -26337012 - MIR SINE MIR -54 208 116 440 217 0 0 chr12 117449819 117449902 -26336553 - MIR SINE MIR -71 191 109 336 231 8 14 chr12 117450030 117450116 -26336339 + MIR SINE MIR 78 146 -62 412 239 0 60 chr12 117450588 117450705 -26335750 + MIR3 SINE MIR 88 197 -11 343 200 63 0 chr12 117450819 117450914 -26335541 - MIR3 SINE MIR -27 181 81 23 0 0 0 chr12 117451994 117452017 -26334438 + AT_rich Low_complexity Low_complexity 1 23 0 29 104 0 0 chr12 117452838 117452944 -26333511 + GC_rich Low_complexity Low_complexity 1 106 0 375 163 0 0 chr12 117453031 117453111 -26333344 + (CGG)n Simple_repeat Simple_repeat 1 80 0 206 122 0 61 chr12 117453178 117453227 -26333228 + (CCCCG)n Simple_repeat Simple_repeat 2 47 0 192 330 33 22 chr12 117454632 117454723 -26331732 + MER5B DNA MER1_type 87 178 0 2026 77 36 4 chr12 117455317 117455498 -26330957 - AluY SINE Alu 0 311 116 306 0 0 0 chr12 117455498 117455532 -26330923 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2026 77 36 4 chr12 117455532 117455652 -26330803 - AluY SINE Alu -195 116 1 231 114 0 0 chr12 117455877 117455921 -26330534 + (T)n Simple_repeat Simple_repeat 1 44 0 1868 136 3 23 chr12 117456075 117456384 -26330071 + AluJo SINE Alu 1 303 -9 2010 133 0 13 chr12 117456986 117457301 -26329154 - AluSq SINE Alu -2 311 1 237 139 0 0 chr12 117457301 117457344 -26329111 + (T)n Simple_repeat Simple_repeat 1 43 0 220 304 108 10 chr12 117457715 117457817 -26328638 + MIR SINE MIR 77 188 -74 1994 122 0 7 chr12 117457947 117458235 -26328220 + AluJb SINE Alu 14 299 -13 425 299 69 52 chr12 117458573 117458958 -26327497 + Charlie8 DNA MER1_type 1 381 -2036 23 0 0 0 chr12 117460433 117460456 -26325999 + AT_rich Low_complexity Low_complexity 1 23 0 351 172 118 0 chr12 117461246 117461339 -26325116 + L1MD3 LINE L1 6987 7090 -905 30 59 0 0 chr12 117461382 117461433 -26325022 + AT_rich Low_complexity Low_complexity 1 51 0 2494 209 28 73 chr12 117461437 117462161 -26324294 + L1MD3 LINE L1 7302 7992 -3 2598 153 43 50 chr12 117462183 117462719 -26323736 + L1MB2 LINE L1 5636 6167 -4 776 238 48 33 chr12 117462792 117463002 -26323453 - MER20 DNA MER1_type -6 213 1 225 0 0 0 chr12 117463038 117463063 -26323392 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 286 222 0 0 chr12 117463086 117463140 -26323315 - MER3 DNA MER1_type -3 206 153 1790 163 14 14 chr12 117463148 117463442 -26323013 + AluJo SINE Alu 1 294 -18 2171 113 0 44 chr12 117463444 117463764 -26322691 + AluSx SINE Alu 1 306 -6 331 294 106 76 chr12 117463773 117463924 -26322531 + L1ME LINE L1 4937 5082 -1064 2163 106 0 3 chr12 117463924 117464208 -26322247 + AluSc SINE Alu 1 283 -26 331 294 106 76 chr12 117464208 117464387 -26322068 + L1ME LINE L1 5082 5286 -860 2176 92 14 10 chr12 117464387 117464682 -26321773 + AluSx SINE Alu 1 296 -16 331 294 106 76 chr12 117464682 117464786 -26321669 + L1ME LINE L1 5286 5385 -761 386 341 45 42 chr12 117464819 117465177 -26321278 + L1ME LINE L1 5410 5768 -394 2324 109 0 3 chr12 117465655 117465959 -26320496 + AluSg SINE Alu 1 303 -7 2198 77 7 4 chr12 117465959 117466233 -26320222 + AluSc SINE Alu 17 291 -18 355 245 187 29 chr12 117466615 117466754 -26319701 - MER5A DNA MER1_type -3 186 26 1442 224 162 48 chr12 117466902 117467014 -26319441 - MLT1G LTR MaLR 0 590 492 752 200 23 0 chr12 117467014 117467144 -26319311 + FLAM_C SINE Alu 1 133 0 1442 224 162 48 chr12 117467144 117467589 -26318866 - MLT1G LTR MaLR -98 492 4 5034 67 3 5 chr12 117467820 117468437 -26318018 - L1PA8 LINE L1 -2 6170 5555 3440 73 41 3 chr12 117468438 117469104 -26317351 + L1PA8 LINE L1 4876 5560 -612 559 198 60 84 chr12 117469527 117469595 -26316860 - MLT1G1 LTR MaLR -430 165 97 1830 160 11 0 chr12 117469595 117469935 -26316520 - AluSx SINE Alu 0 343 1 559 198 60 84 chr12 117469935 117470032 -26316423 - MLT1G1 LTR MaLR -498 97 3 2318 100 0 10 chr12 117470239 117470549 -26315906 - AluSg1 SINE Alu -2 307 1 2057 119 36 0 chr12 117470584 117470886 -26315569 + AluSq SINE Alu 1 313 0 327 273 0 0 chr12 117470991 117471068 -26315387 - MIR SINE MIR 0 262 186 581 158 0 10 chr12 117471314 117471415 -26315040 - L1MB5 LINE L1 0 6174 6075 328 221 60 121 chr12 117471415 117471477 -26314978 - MIR SINE MIR -62 200 136 832 164 0 15 chr12 117471477 117471611 -26314844 - FLAM_C SINE Alu 0 133 2 328 221 60 121 chr12 117471611 117471697 -26314758 - MIR SINE MIR -126 136 61 459 154 10 28 chr12 117471858 117471882 -26314573 + L1MA9 LINE L1 6096 6119 -176 790 118 8 8 chr12 117471882 117472009 -26314446 - L1MA9 LINE L1 0 6312 6186 459 154 10 28 chr12 117472009 117472082 -26314373 + L1MA9 LINE L1 6119 6186 -109 219 69 0 0 chr12 117472136 117472165 -26314290 + (T)n Simple_repeat Simple_repeat 1 29 0 868 232 22 5 chr12 117472330 117472515 -26313940 + MER58A DNA MER1_type 37 224 0 299 287 50 40 chr12 117473001 117473102 -26313353 - L2 LINE L2 -54 3259 3158 1033 197 30 4 chr12 117473126 117473360 -26313095 + L1MD3 LINE L1 7741 7980 -15 213 121 0 0 chr12 117473393 117473426 -26313029 + (CATA)n Simple_repeat Simple_repeat 3 35 0 646 253 12 36 chr12 117475053 117475219 -26311236 + MIR SINE MIR 80 241 -21 1740 162 3 22 chr12 117475685 117475999 -26310456 - AluJo SINE Alu -4 308 1 2240 110 0 0 chr12 117476155 117476447 -26310008 + AluSq SINE Alu 2 293 -20 372 263 0 0 chr12 117476753 117476829 -26309626 + Tigger5 DNA MER2_type 1 76 -2247 410 195 26 0 chr12 117476832 117476909 -26309546 - Tigger5 DNA MER2_type -3 2320 2242 * 425 192 51 0 chr12 117476899 117476977 -26309478 + Tigger5 DNA MER2_type 2242 2323 0 2187 119 0 10 chr12 117477031 117477436 -26309019 - AluSx SINE Alu 0 402 1 738 149 0 9 chr12 117477477 117477591 -26308864 - FLAM_C SINE Alu -29 114 2 251 200 62 15 chr12 117477594 117477659 -26308796 - MIR SINE MIR -97 165 98 2128 153 104 60 chr12 117477872 117478341 -26308114 - L1MB7 LINE L1 -1 6183 5694 1563 167 71 3 chr12 117478344 117478626 -26307829 - MSTA LTR MaLR -126 302 2 286 279 148 29 chr12 117478712 117478956 -26307499 - L1M4 LINE L1 -1511 4635 4363 786 125 0 0 chr12 117479101 117479205 -26307250 - FRAM SINE Alu -16 160 57 694 298 46 58 chr12 117479564 117479893 -26306562 - MLT1K LTR MaLR -121 467 143 288 239 60 15 chr12 117479894 117479961 -26306494 - MLT1K LTR MaLR -380 208 139 * 327 235 0 15 chr12 117479928 117479996 -26306459 - MLT1K LTR MaLR -348 240 174 2906 85 3 3 chr12 117480496 117480860 -26305595 - THE1B LTR MaLR 0 364 1 912 211 13 0 chr12 117481193 117481349 -26305106 - FRAM SINE Alu -8 158 1 2307 108 7 0 chr12 117481602 117481907 -26304548 + AluSx SINE Alu 1 307 -5 1982 137 0 17 chr12 117482199 117482499 -26303956 + AluSx SINE Alu 1 295 -17 508 281 58 66 chr12 117482674 117483223 -26303232 + L1MC/D LINE L1 5198 5430 -801 1987 88 42 25 chr12 117483290 117483573 -26302882 - AluSx SINE Alu -12 300 13 605 199 35 78 chr12 117483592 117483823 -26302632 - MER97c DNA MER1_type? -41 1049 829 2195 116 0 7 chr12 117484021 117484323 -26302132 + AluSx SINE Alu 1 300 -12 2831 206 20 11 chr12 117484552 117485105 -26301350 - MER89 LTR ERV1 -1 558 1 2171 106 0 62 chr12 117485240 117485561 -26300894 - AluSx SINE Alu -11 301 1 1997 156 0 0 chr12 117485658 117485959 -26300496 - AluJo SINE Alu -11 301 1 788 189 0 8 chr12 117486053 117486180 -26300275 + FLAM_C SINE Alu 2 127 -16 1629 272 25 9 chr12 117486231 117486668 -26299787 - MER97b DNA MER1_type? -542 511 68 1933 151 25 0 chr12 117487020 117487345 -26299110 - L1MC3 LINE L1 -196 7589 7257 5154 175 39 9 chr12 117487375 117489165 -26297290 + L1MB7 LINE L1 4253 6100 -84 1961 145 63 0 chr12 117489172 117489490 -26296965 - MER2 DNA MER2_type -7 338 1 2191 121 0 3 chr12 117489595 117489892 -26296563 + AluSx SINE Alu 1 296 -16 32 67 0 0 chr12 117489892 117489952 -26296503 + AT_rich Low_complexity Low_complexity 1 60 0 258 105 0 0 chr12 117490691 117490729 -26295726 + (T)n Simple_repeat Simple_repeat 1 38 0 705 242 112 0 chr12 117491354 117491532 -26294923 + MER3 DNA MER1_type 3 200 -9 1631 196 14 0 chr12 117492497 117492793 -26293662 + AluJb SINE Alu 1 300 -12 2521 51 0 3 chr12 117492795 117493091 -26293364 + AluY SINE Alu 1 295 -16 206 31 0 31 chr12 117493095 117493127 -26293328 + (TTATA)n Simple_repeat Simple_repeat 3 33 0 2374 129 34 20 chr12 117493386 117493743 -26292712 + THE1B LTR MaLR 1 362 -2 458 221 103 7 chr12 117493917 117494053 -26292402 - L1MC4a LINE L1 0 7808 7660 248 305 0 0 chr12 117494706 117494765 -26291690 + L2 LINE L2 3207 3265 -7 358 344 20 7 chr12 117495954 117496105 -26290350 - L1ME2 LINE L1 -10 6154 6002 2429 92 7 0 chr12 117496230 117496536 -26289919 + AluSx SINE Alu 1 308 -4 472 217 87 14 chr12 117496767 117496793 -26289662 + L1ME4a LINE L1 5973 5996 -125 1941 97 7 18 chr12 117496793 117497071 -26289384 - AluSx SINE Alu -37 275 1 472 217 87 14 chr12 117497071 117497182 -26289273 + L1ME4a LINE L1 5996 6120 -1 2120 104 0 55 chr12 117497437 117497765 -26288690 + AluY SINE Alu 1 310 -1 212 263 18 18 chr12 117498475 117498532 -26287923 - MER5A DNA MER1_type -9 180 124 1828 113 76 46 chr12 117498774 117499134 -26287321 - AluSx SINE Alu 0 369 1 194 0 39 0 chr12 117499496 117499522 -26286933 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 411 60 0 0 chr12 117500584 117500634 -26285821 - MER58 DNA MER1_type -3 2417 2368 * 863 104 104 19 chr12 117500632 117500786 -26285669 - MER58 DNA MER1_type -2162 258 92 715 191 22 15 chr12 117500979 117501115 -26285340 - MER58 DNA MER1_type -2277 143 7 216 0 0 0 chr12 117501963 117501987 -26284468 + (A)n Simple_repeat Simple_repeat 1 24 0 213 154 0 0 chr12 117503211 117503250 -26283205 + T-rich Low_complexity Low_complexity 1 39 0 236 53 26 0 chr12 117503552 117503590 -26282865 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 591 226 53 62 chr12 117504278 117504486 -26281969 - L1ME3A LINE L1 0 6170 5965 2085 126 3 22 chr12 117504640 117504957 -26281498 + AluJb SINE Alu 1 311 -1 1453 198 60 64 chr12 117505515 117505935 -26280520 - MER39 LTR ERV1 0 707 290 2269 95 7 0 chr12 117506548 117506844 -26279611 + AluSq SINE Alu 1 298 -15 1712 128 110 7 chr12 117507034 117507315 -26279140 + AluSx SINE Alu 1 310 -2 1355 158 24 8 chr12 117507455 117507702 -26278753 - AluJb SINE Alu -22 290 40 1845 161 0 23 chr12 117508105 117508410 -26278045 + AluJo SINE Alu 1 298 -14 523 281 116 0 chr12 117508663 117508827 -26277628 + MIR SINE MIR 15 197 -65 2319 136 0 23 chr12 117508924 117509269 -26277186 + MER1B DNA MER1_type 1 337 0 240 159 27 42 chr12 117509853 117509930 -26276525 + MIR SINE MIR 13 85 -123 1290 178 30 4 chr12 117509953 117510183 -26276272 + MER46A DNA MER2_type 1 236 0 304 365 77 0 chr12 117510250 117510483 -26275972 + L1 LINE L1 5146 5396 -750 2291 78 0 3 chr12 117510637 117510968 -26275487 - AluY SINE Alu 0 330 1 964 163 0 7 chr12 117510982 117511135 -26275320 - FRAM SINE Alu -24 152 1 389 296 0 40 chr12 117511318 117511443 -26275012 + L2 LINE L2 3152 3271 -1 2148 101 52 0 chr12 117511490 117511777 -26274678 + AluSx SINE Alu 1 302 -10 1908 103 136 55 chr12 117511819 117512103 -26274352 - L1PA16 LINE L1 -6 6160 5838 1854 107 0 4 chr12 117512103 117512347 -26274108 - AluSx SINE Alu -12 300 58 1908 103 136 55 chr12 117512347 117512429 -26274026 - L1PA16 LINE L1 -328 5838 5764 2627 105 28 25 chr12 117512916 117513279 -26273176 - THE1B LTR MaLR 0 364 1 232 311 37 67 chr12 117513578 117513713 -26272742 + MIR SINE MIR 119 249 -13 322 265 36 0 chr12 117513891 117513974 -26272481 - L2 LINE L2 0 3272 3187 1910 172 0 6 chr12 117514320 117514634 -26271821 - AluJb SINE Alu 0 312 1 360 251 18 11 chr12 117514640 117514767 -26271688 - L1M1 LINE L1 -460 5845 5719 * 673 287 94 41 chr12 117514755 117515490 -26270965 - L1MC/D LINE L1 -743 5403 4901 303 183 15 0 chr12 117515495 117515572 -26270883 - L1ME1 LINE L1 -4 6158 6081 639 280 109 66 chr12 117515829 117516814 -26269641 - L1MC/D LINE L1 -1438 4708 3682 1184 104 7 0 chr12 117516956 117517110 -26269345 + AluSg/x SINE Alu 135 289 -23 249 269 37 28 chr12 117517122 117517230 -26269225 - L1ME1 LINE L1 -213 5951 5843 964 220 53 13 chr12 117517366 117517593 -26268862 + MIR SINE MIR 20 255 -7 665 275 138 53 chr12 117517594 117517976 -26268479 - L1ME1 LINE L1 -378 5792 5444 2246 109 0 0 chr12 117517976 117518270 -26268185 - AluSx SINE Alu -17 295 2 1926 155 7 0 chr12 117518273 117518569 -26267886 - AluJb SINE Alu -14 298 1 665 275 138 53 chr12 117518569 117518669 -26267786 - L1ME1 LINE L1 -727 5443 5265 1793 183 0 3 chr12 117518812 117519097 -26267358 + AluJo SINE Alu 1 284 -28 423 193 23 0 chr12 117519117 117519205 -26267250 - L1ME1 LINE L1 -1053 5093 5004 * 1601 196 60 11 chr12 117519204 117519557 -26266898 - L1MB8 LINE L1 0 6178 5809 1561 256 37 48 chr12 117519547 117520102 -26266353 - L1ME1 LINE L1 -1120 5026 4478 * 1123 198 8 34 chr12 117520102 117520290 -26266165 - L1MB5 LINE L1 -8 6166 5984 2297 143 63 54 chr12 117520290 117520717 -26265738 - MSTB1 LTR MaLR -1 431 1 1123 198 8 34 chr12 117520717 117520766 -26265689 - L1MB5 LINE L1 -190 5984 5935 1561 256 37 48 chr12 117520766 117520862 -26265593 - L1ME1 LINE L1 -1668 4478 4382 532 288 46 14 chr12 117520919 117521138 -26265317 - L1MC5 LINE L1 -61 7900 7675 738 139 0 0 chr12 117521172 117521287 -26265168 - L1MB7 LINE L1 0 6184 6070 1041 128 20 98 chr12 117521291 117521420 -26265035 - L1MB7 LINE L1 -503 5675 5566 1753 171 16 25 chr12 117521420 117521735 -26264720 - AluJb SINE Alu 0 312 1 1041 128 20 98 chr12 117521735 117521808 -26264647 - L1MB7 LINE L1 -612 5566 5489 521 148 59 10 chr12 117521820 117521921 -26264534 - MSTB1 LTR MaLR -124 308 203 326 44 0 0 chr12 117521928 117521973 -26264482 - L1MB7 LINE L1 -719 5459 5415 419 204 90 65 chr12 117521981 117522152 -26264303 - L1MC5 LINE L1 -447 7514 7336 996 169 60 20 chr12 117522152 117522353 -26264102 - MER3 DNA MER1_type 0 209 1 419 204 90 65 chr12 117522353 117522382 -26264073 - L1MC5 LINE L1 -625 7336 7309 * 429 284 28 7 chr12 117522377 117522518 -26263937 - L1ME1 LINE L1 -3363 2783 2640 406 271 104 32 chr12 117522605 117522826 -26263629 + L1MC5 LINE L1 5746 5982 -1826 2331 106 0 0 chr12 117522846 117523147 -26263308 - AluSc SINE Alu -8 301 1 808 112 22 22 chr12 117523178 117523312 -26263143 - AluJo SINE Alu -178 134 1 2082 125 3 0 chr12 117523781 117524068 -26262387 + AluSx SINE Alu 1 288 -24 607 255 77 19 chr12 117524103 117524377 -26262078 + L1MC5 LINE L1 6563 6863 -951 847 259 0 6 chr12 117524378 117524548 -26261907 + FRAM SINE Alu 1 164 -12 2904 219 60 70 chr12 117524560 117524639 -26261816 + L1MC5 LINE L1 6854 6932 -1029 1987 109 0 67 chr12 117524639 117524951 -26261504 + AluSx SINE Alu 1 291 -21 2904 219 60 70 chr12 117524951 117525940 -26260515 + L1MC5 LINE L1 6932 7911 -50 29 78 0 0 chr12 117525941 117526005 -26260450 + AT_rich Low_complexity Low_complexity 1 64 0 203 79 26 0 chr12 117526008 117526046 -26260409 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 236 266 21 11 chr12 117526046 117526140 -26260315 - MER113 DNA MER1_type? -423 98 4 635 260 92 57 chr12 117526521 117526868 -26259587 - MLT1J2 LTR MaLR 0 450 62 467 308 24 39 chr12 117527179 117527387 -26259068 + MER102a DNA MER1_type 126 330 0 192 77 0 0 chr12 117527457 117527483 -26258972 + (TTTAA)n Simple_repeat Simple_repeat 3 28 0 263 266 50 50 chr12 117527552 117527691 -26258764 - L3b LINE CR1 -342 1241 1103 556 259 127 5 chr12 117528147 117528352 -26258103 - MIR SINE MIR -32 230 1 1853 180 10 6 chr12 117528399 117528710 -26257745 - AluJb SINE Alu 0 312 1 369 221 27 60 chr12 117528829 117528978 -26257477 - L1MC5 LINE L1 -36 7925 7782 3806 198 77 15 chr12 117529000 117530112 -26256343 - L1ME2 LINE L1 0 6164 4980 414 0 0 0 chr12 117530112 117530158 -26256297 + (TG)n Simple_repeat Simple_repeat 2 47 0 3806 198 77 15 chr12 117530158 117530198 -26256257 - L1ME2 LINE L1 -1184 4980 4944 731 185 0 15 chr12 117530211 117530341 -26256114 - AluJo SINE Alu -178 134 7 327 294 0 10 chr12 117530352 117530454 -26256001 - L1ME2 LINE L1 -1198 4948 4848 285 226 0 0 chr12 117530482 117530544 -26255911 - L1ME2 LINE L1 -1433 4713 4652 758 218 26 16 chr12 117530544 117530737 -26255718 + LTR41 LTR ERVL 1 195 -578 226 300 14 14 chr12 117531094 117531164 -26255291 + LTR41 LTR ERVL 513 582 -191 23 54 0 0 chr12 117531283 117531320 -26255135 + AT_rich Low_complexity Low_complexity 1 37 0 609 285 103 19 chr12 117531378 117531592 -26254863 + MIR SINE MIR 10 241 -21 1088 282 120 41 chr12 117532116 117532651 -26253804 - MLT1K LTR MaLR -10 578 2 23 0 0 0 chr12 117532850 117532873 -26253582 + AT_rich Low_complexity Low_complexity 1 23 0 871 159 8 0 chr12 117533324 117533456 -26252999 - FLAM_A SINE Alu 0 133 1 2084 100 0 10 chr12 117533769 117534060 -26252395 - AluSx SINE Alu 0 312 25 6465 75 22 6 chr12 117534187 117535248 -26251207 - L1PA11 LINE L1 -1 6173 5082 415 258 178 33 chr12 117535295 117535557 -26250898 + L2 LINE L2 2755 3051 -221 2188 87 25 0 chr12 117535557 117535843 -26250612 + AluSx SINE Alu 1 293 -19 415 258 178 33 chr12 117535843 117535854 -26250601 + L2 LINE L2 3051 3059 -213 2238 80 6 19 chr12 117535912 117536224 -26250231 - AluSc SINE Alu -1 308 1 1038 144 0 0 chr12 117536650 117536830 -26249625 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1757 154 3 11 chr12 117537894 117538180 -26248275 - AluJb SINE Alu -28 284 1 2287 101 0 3 chr12 117538570 117538866 -26247589 + AluSg SINE Alu 1 295 -15 2171 119 0 22 chr12 117538988 117539339 -26247116 - AluSx SINE Alu 0 312 1 180 255 0 0 chr12 117539859 117539906 -26246549 + MIR SINE MIR 124 170 -92 2204 124 0 6 chr12 117539931 117540245 -26246210 - AluSx SINE Alu 0 312 1 254 266 9 53 chr12 117540960 117541073 -26245382 - MLT1K LTR MaLR -11 577 470 831 241 79 81 chr12 117541073 117541530 -26244925 + L1ME3A LINE L1 5417 5872 -298 2131 103 30 13 chr12 117541580 117541882 -26244573 + AluSq SINE Alu 1 307 -6 743 204 7 13 chr12 117541927 117542079 -26244376 - MER58B DNA MER1_type 0 341 191 1747 229 176 32 chr12 117542347 117542426 -26244029 - L1ME3 LINE L1 -53 6109 6043 2358 105 0 0 chr12 117542426 117542732 -26243723 + AluSx SINE Alu 1 306 -6 1747 229 176 32 chr12 117542732 117542746 -26243709 - L1ME3 LINE L1 -119 6043 6032 1840 161 0 17 chr12 117542746 117543038 -26243417 + AluJo SINE Alu 1 287 -25 1747 229 176 32 chr12 117543038 117543714 -26242741 - L1ME3 LINE L1 -130 6032 5223 819 278 42 71 chr12 117543713 117544166 -26242289 + L1ME3 LINE L1 4757 5196 -950 * 837 181 28 28 chr12 117544604 117544781 -26241674 - MER5B DNA MER1_type -1 177 1 1944 157 0 0 chr12 117544855 117545149 -26241306 - AluJb SINE Alu -11 301 8 877 122 9 0 chr12 117545607 117545722 -26240733 + FLAM_C SINE Alu 5 120 -13 478 19 0 0 chr12 117546313 117546365 -26240090 - L1PA3 LINE L1 -18 6137 6086 903 130 42 68 chr12 117547278 117547312 -26239143 + MER53 DNA DNA 3 36 -153 2188 116 0 13 chr12 117547312 117547623 -26238832 + AluSx SINE Alu 1 307 -5 903 130 42 68 chr12 117547623 117547780 -26238675 + MER53 DNA DNA 36 189 0 1904 153 0 14 chr12 117548045 117548339 -26238116 + AluJo SINE Alu 1 290 -22 219 69 0 0 chr12 117548339 117548368 -26238087 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 30 chr12 117548418 117548432 -26238023 + AT_rich Low_complexity Low_complexity 1 14 -18 2286 85 3 7 chr12 117548432 117548726 -26237729 - AluSc SINE Alu -16 293 1 22 0 0 30 chr12 117548726 117548744 -26237711 + AT_rich Low_complexity Low_complexity 14 32 0 1689 133 0 145 chr12 117549435 117549773 -26236682 + AluJb SINE Alu 1 289 -13 438 242 0 0 chr12 117549773 117549864 -26236591 + AluJ/FRAM SINE Alu 219 309 -3 678 299 76 33 chr12 117550054 117550522 -26235933 + L2 LINE L2 2763 3252 -20 266 165 24 27 chr12 117550603 117550815 -26235640 + AluJo SINE Alu 1 283 -19 224 284 90 15 chr12 117551118 117551185 -26235270 + L2 LINE L2 3151 3222 -50 1689 187 10 10 chr12 117551284 117551583 -26234872 - AluJo SINE Alu -5 307 9 2152 120 3 7 chr12 117551908 117552207 -26234248 - AluSx SINE Alu -14 298 1 471 176 0 0 chr12 117552298 117552389 -26234066 + CT-rich Low_complexity Low_complexity 2 92 0 2107 143 0 0 chr12 117553258 117553558 -26232897 - AluJo SINE Alu -12 300 1 2288 117 0 0 chr12 117553976 117554284 -26232171 + AluSx SINE Alu 1 308 -4 1174 202 9 0 chr12 117554300 117554518 -26231937 - AluJb SINE Alu -92 220 1 1975 152 0 0 chr12 117555283 117555572 -26230883 - AluJb SINE Alu -21 291 3 483 248 72 0 chr12 117555669 117555794 -26230661 - L1ME3 LINE L1 -6 6156 6023 1160 136 0 0 chr12 117555871 117556070 -26230385 - AluSg/x SINE Alu 0 312 133 285 98 0 0 chr12 117556070 117556111 -26230344 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1999 118 14 4 chr12 117556111 117556391 -26230064 - AluSx SINE Alu -29 283 1 206 263 153 25 chr12 117556421 117556539 -26229916 + MIR SINE MIR 123 255 -7 739 253 148 44 chr12 117556627 117556744 -26229711 + L1ME3A LINE L1 5760 5863 -307 2342 105 0 0 chr12 117556744 117557040 -26229415 + AluSx SINE Alu 1 296 -16 739 253 148 44 chr12 117557040 117557286 -26229169 + L1ME3A LINE L1 5863 6161 -9 2226 125 0 3 chr12 117557310 117557623 -26228832 + AluSx SINE Alu 1 312 0 1993 151 0 13 chr12 117557823 117558128 -26228327 - AluJo SINE Alu -11 301 1 2246 110 0 3 chr12 117558311 117558612 -26227843 + AluSg SINE Alu 1 300 -10 2427 169 38 92 chr12 117558897 117559020 -26227435 - L1MB7 LINE L1 0 6184 6056 452 18 18 0 chr12 117559020 117559077 -26227378 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 1751 111 77 4 chr12 117559077 117559338 -26227117 - AluSg SINE Alu -30 280 1 2427 169 38 92 chr12 117559338 117559823 -26226632 - L1MB7 LINE L1 -126 6058 5608 2222 86 3 60 chr12 117559823 117560138 -26226317 + AluSq SINE Alu 1 297 -16 1159 131 0 0 chr12 117560138 117560298 -26226157 + AluSg/x SINE Alu 132 291 -19 1218 178 18 88 chr12 117560301 117560475 -26225980 - L1MB7 LINE L1 -743 5403 5218 2127 86 0 0 chr12 117560475 117560743 -26225712 - AluY SINE Alu -43 268 1 1218 178 18 88 chr12 117560743 117560922 -26225533 - L1MB7 LINE L1 -928 5218 5327 2434 39 0 4 chr12 117560922 117561232 -26225223 - AluY SINE Alu 0 309 1 1218 178 18 88 chr12 117561232 117561444 -26225011 - L1MB7 LINE L1 -818 5328 5103 1453 128 5 5 chr12 117561454 117561658 -26224797 - AluSq SINE Alu -1 312 109 225 0 0 0 chr12 117561658 117561683 -26224772 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2176 69 22 4 chr12 117561685 117561959 -26224496 - AluY SINE Alu -31 280 2 273 29 0 0 chr12 117562304 117562338 -26224117 + (CA)n Simple_repeat Simple_repeat 2 35 0 1371 158 59 15 chr12 117562352 117562625 -26223830 - L1M3f LINE L1 -5028 300 16 1742 171 6 44 chr12 117562661 117562977 -26223478 - AluJo SINE Alu -8 304 1 925 157 27 76 chr12 117563387 117563447 -26223008 + MER20 DNA MER1_type 4 65 -154 2149 132 145 5 chr12 117563447 117563819 -26222636 - MSTA LTR MaLR -2 426 3 925 157 27 76 chr12 117563819 117563981 -26222474 + MER20 DNA MER1_type 65 215 -4 654 281 128 61 chr12 117564311 117564670 -26221785 - L2 LINE L2 -5 3308 2926 296 231 28 65 chr12 117564788 117564896 -26221559 - MIR SINE MIR -74 134 31 1795 148 25 0 chr12 117564952 117565230 -26221225 - AluJo SINE Alu -22 290 6 1947 150 0 38 chr12 117565909 117566222 -26220233 + AluJb SINE Alu 2 302 -10 1447 161 21 112 chr12 117566223 117566272 -26220183 - L1MB2 LINE L1 0 6171 6119 2213 121 0 10 chr12 117566272 117566578 -26219877 - AluSx SINE Alu -9 303 1 1447 161 21 112 chr12 117566578 117566957 -26219498 - L1MB2 LINE L1 -52 6119 5782 23 0 0 0 chr12 117566980 117567003 -26219452 + AT_rich Low_complexity Low_complexity 1 23 0 314 266 9 18 chr12 117567169 117567278 -26219177 - L1MC4a LINE L1 -1850 5958 5851 1916 153 24 7 chr12 117567278 117567572 -26218883 - AluJo SINE Alu -13 299 1 252 33 0 0 chr12 117568088 117568118 -26218337 + AluY SINE Alu 16 45 -255 864 136 0 0 chr12 117568119 117568244 -26218211 + FLAM_C SINE Alu 16 140 -3 992 174 30 6 chr12 117568291 117568458 -26217997 + AluJo SINE Alu 120 290 -22 646 239 12 84 chr12 117568530 117568781 -26217674 - L2 LINE L2 -1 3312 3080 210 128 0 0 chr12 117569019 117569058 -26217397 + (TC)n Simple_repeat Simple_repeat 2 40 0 1030 142 0 0 chr12 117569331 117569472 -26216983 + AluJb SINE Alu 14 154 -158 * 1204 173 0 0 chr12 117569471 117569662 -26216793 + AluJo SINE Alu 112 302 -10 779 183 21 108 chr12 117569893 117570134 -26216321 - MER102a DNA MER1_type -14 316 97 2433 92 0 7 chr12 117570148 117570454 -26216001 + AluSq SINE Alu 1 304 -9 1924 144 3 46 chr12 117570879 117571026 -26215429 + AluJb SINE Alu 1 153 -159 252 0 0 0 chr12 117571026 117571054 -26215401 + (TA)n Simple_repeat Simple_repeat 2 29 0 1924 144 3 46 chr12 117571054 117571232 -26215223 + AluJb SINE Alu 153 312 0 267 221 15 0 chr12 117571689 117571757 -26214698 - MER116 DNA Mariner -8 72 4 592 257 196 52 chr12 117572013 117572043 -26214412 - L2 LINE L2 0 3313 3289 2080 146 7 0 chr12 117572043 117572337 -26214118 + AluSx SINE Alu 1 296 -16 592 257 196 52 chr12 117572337 117572466 -26213989 - L2 LINE L2 -24 3289 3180 1353 186 93 31 chr12 117572466 117572789 -26213666 - MER2 DNA MER2_type -1 343 1 592 257 196 52 chr12 117572789 117572918 -26213537 - L2 LINE L2 -133 3180 3071 1995 157 80 0 chr12 117572918 117573256 -26213199 - MLT1A1 LTR MaLR 0 365 1 592 257 196 52 chr12 117573256 117573369 -26213086 - L2 LINE L2 -242 3071 2852 2043 125 14 0 chr12 117573765 117574046 -26212409 + AluSx SINE Alu 3 287 -25 768 62 0 0 chr12 117574090 117574187 -26212268 + AluY SINE Alu 201 297 -14 2366 74 0 3 chr12 117574214 117574524 -26211931 + AluY SINE Alu 1 309 0 338 318 0 0 chr12 117574589 117574677 -26211778 - MIR SINE MIR -48 214 127 1452 149 124 32 chr12 117574947 117575109 -26211346 - AluJb SINE Alu -4 308 162 2547 68 0 10 chr12 117575109 117575420 -26211035 - AluY SINE Alu -3 308 1 1452 149 124 32 chr12 117575420 117575539 -26210916 - AluJb SINE Alu -150 162 1 593 149 50 144 chr12 117575579 117575760 -26210695 - L1ME LINE L1 -388 5776 5613 2293 107 17 0 chr12 117577126 117577425 -26209030 - AluSx SINE Alu -7 305 2 1215 127 6 0 chr12 117577464 117577637 -26208818 + AluSq SINE Alu 137 310 -3 745 188 152 65 chr12 117577709 117578101 -26208354 - MLT1C LTR MaLR -2 388 6 603 294 22 43 chr12 117578731 117578962 -26207493 - MIR SINE MIR -18 244 19 248 315 77 35 chr12 117579183 117579326 -26207129 + MIR SINE MIR 54 202 -60 1905 162 17 0 chr12 117579923 117580042 -26206413 + AluJb SINE Alu 1 117 -195 198 0 0 0 chr12 117580042 117580064 -26206391 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1905 162 17 0 chr12 117580064 117580240 -26206215 + AluJb SINE Alu 117 301 -11 22 0 0 0 chr12 117580430 117580452 -26206003 + AT_rich Low_complexity Low_complexity 1 22 0 315 237 34 59 chr12 117580470 117580588 -26205867 - L1ME3A LINE L1 -266 5904 5790 633 247 31 0 chr12 117580606 117580768 -26205687 - MER58A DNA MER1_type -34 190 24 257 206 72 52 chr12 117580776 117580873 -26205582 - L1ME3A LINE L1 -371 5791 5693 2200 136 0 0 chr12 117580922 117581224 -26205231 + AluSx SINE Alu 1 302 -10 387 256 179 0 chr12 117581837 117581954 -26204501 + MIR SINE MIR 10 147 -115 1863 124 91 0 chr12 117583353 117583618 -26202837 + AluSx SINE Alu 11 299 -13 198 331 71 39 chr12 117584437 117584564 -26201891 + MIR SINE MIR 16 146 -62 621 240 20 7 chr12 117585864 117586010 -26200445 - MER5B DNA MER1_type -1 177 30 719 225 242 3 chr12 117586680 117586965 -26199490 + L1M4 LINE L1 3332 3684 -2462 2216 116 0 0 chr12 117587047 117587354 -26199101 + AluSx SINE Alu 1 307 0 297 0 0 0 chr12 117587540 117587573 -26198882 + (TA)n Simple_repeat Simple_repeat 2 34 0 1737 165 34 0 chr12 117587617 117587908 -26198547 + AluJb SINE Alu 11 311 -1 472 240 5 135 chr12 117588253 117588445 -26198010 + MIR3 SINE MIR 35 201 -7 2404 109 0 0 chr12 117588624 117588935 -26197520 - AluSx SINE Alu -1 311 1 270 326 45 61 chr12 117589122 117589254 -26197201 + L2 LINE L2 3184 3313 0 324 258 86 47 chr12 117589490 117589618 -26196837 - L2 LINE L2 -2 3311 3179 458 217 109 63 chr12 117590125 117590300 -26196155 + MIR3 SINE MIR 1 183 -25 374 276 28 41 chr12 117590489 117590634 -26195821 - MIR SINE MIR -40 222 80 223 199 13 174 chr12 117590859 117590930 -26195525 + MIR SINE MIR 60 104 -130 1636 142 83 53 chr12 117590930 117591232 -26195223 - AluJo SINE Alu 0 312 2 223 199 13 174 chr12 117591232 117591300 -26195155 + MIR SINE MIR 104 181 -53 273 250 67 39 chr12 117591771 117591875 -26194580 - MIR3 SINE MIR -87 121 15 390 238 108 76 chr12 117592506 117592653 -26193802 + MER3 DNA MER1_type 10 166 -43 2029 163 0 0 chr12 117592653 117592959 -26193496 + AluJo SINE Alu 1 306 -6 390 238 108 76 chr12 117592959 117592996 -26193459 + MER3 DNA MER1_type 166 200 -9 198 268 54 0 chr12 117593143 117593199 -26193256 + L3 LINE CR1 1241 1299 -278 2331 108 0 0 chr12 117593227 117593532 -26192923 - AluSx SINE Alu -7 305 1 420 234 103 9 chr12 117593604 117593711 -26192744 - MIR SINE MIR -46 216 100 290 271 71 50 chr12 117593771 117593911 -26192544 + L3 LINE CR1 1320 1462 -115 252 213 0 0 chr12 117595367 117595428 -26191027 + (TG)n Simple_repeat Simple_repeat 2 62 0 2274 112 7 0 chr12 117595449 117595745 -26190710 + AluSx SINE Alu 1 298 -14 634 275 53 0 chr12 117596894 117597065 -26189390 - MIR SINE MIR -52 210 31 684 257 29 18 chr12 117597580 117597751 -26188704 + MER5B DNA MER1_type 1 173 -5 620 198 0 0 chr12 117597801 117597907 -26188548 - MER5A DNA MER1_type -76 113 8 846 174 41 41 chr12 117598804 117599022 -26187433 + L1MD3 LINE L1 7771 7988 -7 3508 146 60 8 chr12 117599168 117599773 -26186682 + MER50 LTR ERV1 1 636 -98 512 128 0 20 chr12 117599795 117599897 -26186558 + (CTA)n Simple_repeat Simple_repeat 1 100 0 392 297 23 32 chr12 117600161 117600380 -26186075 + L1MC5 LINE L1 7701 7917 -44 2164 109 0 0 chr12 117600754 117601029 -26185426 + AluSx SINE Alu 23 297 -15 2870 115 40 13 chr12 117601048 117601501 -26184954 + MER4C LTR ERV1 1 465 0 549 193 66 66 chr12 117601628 117601701 -26184754 - MER103 DNA DNA 0 166 94 2108 200 77 67 chr12 117601701 117602250 -26184205 + MLT2B3 LTR ERVL 1 554 0 549 193 66 66 chr12 117602250 117602342 -26184113 - MER103 DNA DNA -71 95 1 236 201 141 101 chr12 117603113 117603312 -26183143 - MER106A DNA MER1_type -29 207 1 1428 179 10 63 chr12 117603425 117603726 -26182729 - AluJo SINE Alu -15 297 13 706 147 14 35 chr12 117603834 117603977 -26182478 - MER106B DNA MER1_type -14 1045 906 1959 164 0 19 chr12 117604399 117604717 -26181738 - AluJb SINE Alu 0 312 1 1929 89 111 0 chr12 117605335 117605605 -26180850 - AluSp SINE Alu -12 301 2 240 100 0 0 chr12 117605697 117605737 -26180718 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 1176 141 0 0 chr12 117605766 117605929 -26180526 + AluSx SINE Alu 1 163 -149 598 224 43 25 chr12 117606080 117606241 -26180214 - MIR SINE MIR -68 194 31 1341 56 18 0 chr12 117606340 117606538 -26179917 - L1P LINE L1 -815 5339 5139 651 27 0 0 chr12 117606538 117606647 -26179808 + L1PA5 LINE L1 6064 6175 0 2378 113 0 0 chr12 117606897 117607207 -26179248 - AluSx SINE Alu -2 310 1 224 344 73 0 chr12 117607228 117607324 -26179131 + L2 LINE L2 3192 3294 -19 318 237 115 14 chr12 117607331 117607470 -26178985 + L1ME4a LINE L1 5967 6119 -2 1831 116 84 4 chr12 117607542 117607817 -26178638 - AluJb SINE Alu -14 298 2 450 217 23 97 chr12 117608350 117608567 -26177888 + L1MD3 LINE L1 7784 7984 -11 646 194 0 0 chr12 117608574 117608672 -26177783 + FLAM_A SINE Alu 2 99 -43 978 116 8 0 chr12 117608877 117609006 -26177449 + AluSq/x SINE Alu 1 130 -182 200 261 56 32 chr12 117609580 117609716 -26176739 - MIR SINE MIR -21 241 106 92 50 0 0 chr12 117609871 117610012 -26176443 + AT_rich Low_complexity Low_complexity 1 141 0 764 153 0 8 chr12 117610012 117610130 -26176325 - AluJo SINE Alu -176 136 20 392 119 30 0 chr12 117610877 117610944 -26175511 + MER74A LTR ERVL 1 69 -489 1590 205 28 25 chr12 117610944 117611305 -26175150 + MER74A LTR ERVL 196 557 -1 2278 105 10 0 chr12 117611310 117611605 -26174850 + AluSq SINE Alu 1 298 -15 319 313 70 55 chr12 117611620 117611659 -26174796 + L1ME4a LINE L1 5720 5757 -364 2269 100 3 3 chr12 117611659 117611950 -26174505 + AluSp SINE Alu 1 291 -22 319 313 70 55 chr12 117611950 117612182 -26174273 + L1ME4a LINE L1 5757 5995 -126 2266 132 0 0 chr12 117612484 117612794 -26173661 - AluSx SINE Alu -2 310 1 263 284 39 0 chr12 117612982 117613084 -26173371 + L2 LINE L2 3136 3241 -31 1008 199 66 5 chr12 117613904 117614115 -26172340 - MER58A DNA MER1_type 0 224 1 786 136 9 0 chr12 117614397 117614507 -26171948 + FLAM_A SINE Alu 5 115 -18 1895 149 13 17 chr12 117614507 117614808 -26171647 - AluJb SINE Alu -12 300 1 1702 156 3 57 chr12 117615229 117615581 -26170874 + L1MB8 LINE L1 5789 6121 -57 2427 85 3 15 chr12 117615581 117615911 -26170544 - L1PA8A LINE L1 -1 6130 5805 401 101 0 43 chr12 117615912 117615981 -26170474 + L1MB8 LINE L1 6112 6177 -1 433 108 40 40 chr12 117616024 117616098 -26170357 - AluJ/FRAM SINE Alu -22 290 217 215 314 201 16 chr12 117616186 117616380 -26170075 - MIR SINE MIR -3 259 30 268 277 161 45 chr12 117617049 117617204 -26169251 + MIR SINE MIR 46 218 -44 718 267 40 48 chr12 117617247 117617498 -26168957 - MIR SINE MIR -6 256 8 2434 173 79 21 chr12 117618430 117618961 -26167494 + MER68 LTR ERV1 1 562 0 287 260 33 53 chr12 117619148 117619298 -26167157 + Charlie8 DNA MER1_type 75 221 -2196 1936 152 0 22 chr12 117619794 117620109 -26166346 + AluJo SINE Alu 1 308 -4 1983 141 14 10 chr12 117620695 117620992 -26165463 + AluSx SINE Alu 1 298 -14 2157 101 59 3 chr12 117621281 117621568 -26164887 + AluSx SINE Alu 1 303 -9 202 210 48 32 chr12 117621671 117621733 -26164722 - MIR SINE MIR -25 237 175 366 220 194 81 chr12 117621744 117621845 -26164610 + MER3 DNA MER1_type 3 91 -118 2086 134 0 16 chr12 117621845 117622152 -26164303 - AluSx SINE Alu -10 302 1 2123 118 10 10 chr12 117622160 117622457 -26163998 - AluSg SINE Alu -2 308 12 366 220 194 81 chr12 117622457 117622473 -26163982 + MER3 DNA MER1_type 97 110 -99 2422 67 7 10 chr12 117622473 117622773 -26163682 - AluSx SINE Alu -13 299 1 366 220 194 81 chr12 117622773 117622831 -26163624 + MER3 DNA MER1_type 110 209 0 1936 161 3 0 chr12 117623274 117623572 -26162883 + AluJb SINE Alu 1 299 -13 1024 220 46 18 chr12 117623655 117623798 -26162657 - MER58A DNA MER1_type -2196 224 71 2558 78 3 0 chr12 117623798 117624106 -26162349 - AluSp SINE Alu -4 309 1 1024 220 46 18 chr12 117624106 117624180 -26162275 - MER58A DNA MER1_type -2349 71 1 1521 162 47 37 chr12 117624188 117624231 -26162224 - MER33 DNA MER1_type -2261 324 283 1840 153 16 26 chr12 117624231 117624538 -26161917 - AluJo SINE Alu -8 304 1 1521 162 47 37 chr12 117624538 117624815 -26161640 - MER33 DNA MER1_type -2302 283 1 347 197 0 0 chr12 117624919 117624980 -26161475 + MER68 LTR ERV1 62 122 -440 975 167 0 0 chr12 117624991 117625141 -26161314 + AluJo SINE Alu 1 150 -162 731 188 8 0 chr12 117625232 117625360 -26161095 + FLAM_A SINE Alu 1 129 -4 1729 101 4 0 chr12 117625730 117625958 -26160497 + AluSq SINE Alu 39 267 -46 207 0 0 0 chr12 117625968 117625991 -26160464 + (TAA)n Simple_repeat Simple_repeat 2 24 0 673 248 6 19 chr12 117626343 117626504 -26159951 + MIR SINE MIR 13 171 -91 1561 151 84 28 chr12 117626763 117627048 -26159407 - AluJo SINE Alu -11 301 1 234 192 0 0 chr12 117628195 117628247 -26158208 + (CTCA)n Simple_repeat Simple_repeat 4 55 0 1965 125 0 51 chr12 117628331 117628644 -26157811 + AluJb SINE Alu 1 297 -15 476 276 39 56 chr12 117628653 117628885 -26157570 - MIR SINE MIR -15 247 20 2141 122 0 10 chr12 117629669 117629990 -26156465 + AluSx SINE Alu 1 318 0 191 263 0 0 chr12 117630651 117630689 -26155766 - MER5B DNA MER1_type -6 172 135 274 224 128 99 chr12 117630702 117631015 -26155440 - L1MC4 LINE L1 -2 8040 7719 688 216 0 54 chr12 117631020 117631168 -26155287 - MER5B DNA MER1_type -38 140 1 832 180 36 57 chr12 117631262 117631456 -26154999 + MER58A DNA MER1_type 27 216 -8 2334 92 7 0 chr12 117631457 117631752 -26154703 + AluSx SINE Alu 1 297 -15 806 80 0 0 chr12 117631771 117631871 -26154584 + AluSg/x SINE Alu 202 301 -11 1960 135 44 0 chr12 117632000 117632120 -26154335 + AluJo SINE Alu 1 114 -198 324 0 0 0 chr12 117632120 117632156 -26154299 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1960 135 44 0 chr12 117632156 117632331 -26154124 + AluJo SINE Alu 114 309 -3 736 255 83 28 chr12 117632419 117632635 -26153820 + MIR SINE MIR 14 241 -21 2157 134 0 3 chr12 117632706 117633005 -26153450 - AluJb SINE Alu -12 300 3 604 167 0 0 chr12 117633005 117633101 -26153354 - FLAM_C SINE Alu -9 134 39 542 145 132 101 chr12 117633102 117633221 -26153234 + MER58B DNA MER1_type 178 305 -2115 2318 125 0 0 chr12 117633221 117633524 -26152931 - AluSx SINE Alu -9 303 1 542 145 132 101 chr12 117633524 117633563 -26152892 + MER58B DNA MER1_type 305 341 0 2448 80 0 0 chr12 117634004 117634304 -26152151 + AluSg SINE Alu 1 300 -10 479 143 55 11 chr12 117634330 117634421 -26152034 + FLAM_A SINE Alu 41 135 -7 1785 170 27 7 chr12 117634425 117634719 -26151736 + AluJb SINE Alu 1 300 -12 2439 54 0 10 chr12 117634747 117635042 -26151413 - AluY SINE Alu -19 292 1 185 329 12 37 chr12 117635113 117635195 -26151260 - MIR SINE MIR -84 124 45 2065 153 7 0 chr12 117635408 117635708 -26150747 - AluJb SINE Alu -10 302 1 1879 157 3 23 chr12 117636246 117636551 -26149904 - AluJo SINE Alu -13 299 1 2284 89 0 20 chr12 117636624 117636927 -26149528 + AluY SINE Alu 1 297 -14 1877 102 0 0 chr12 117637160 117637396 -26149059 + AluSx SINE Alu 1 236 -76 248 353 78 0 chr12 117637400 117637502 -26148953 - MIR SINE MIR -81 127 18 3728 123 8 0 chr12 117637755 117638277 -26148178 + MER1A DNA MER1_type 2 527 0 1365 169 8 26 chr12 117638704 117638970 -26147485 - L1MB7 LINE L1 -16 6168 5908 1285 125 0 16 chr12 117638971 117639155 -26147300 + AluSx SINE Alu 1 181 -131 198 0 0 0 chr12 117639159 117639181 -26147274 + (A)n Simple_repeat Simple_repeat 1 22 0 619 130 78 0 chr12 117639183 117639298 -26147157 - L1MB7 LINE L1 -256 5918 5795 1932 111 4 0 chr12 117639638 117639891 -26146564 - AluSx SINE Alu -58 254 1 225 178 0 0 chr12 117639914 117639959 -26146496 + (TA)n Simple_repeat Simple_repeat 1 45 0 237 291 23 0 chr12 117639960 117640046 -26146409 + L1MC4 LINE L1 6615 6702 -1340 * 247 315 0 0 chr12 117640017 117640106 -26146349 - L1MC4 LINE L1 -1339 6703 6615 384 286 0 0 chr12 117640122 117640262 -26146193 + (TA)n Simple_repeat Simple_repeat 1 140 0 227 322 0 0 chr12 117640265 117640355 -26146100 - L1MC4 LINE L1 -1339 6703 6614 225 299 23 0 chr12 117640315 117640402 -26146053 + L1MC4 LINE L1 6614 6702 -1340 * 319 294 0 43 chr12 117640406 117640498 -26145957 + L1MC4 LINE L1 6615 6702 -1340 * 322 337 0 0 chr12 117640481 117640570 -26145885 - L1MC4 LINE L1 -1339 6703 6615 207 326 0 0 chr12 117640577 117640626 -26145829 + (TG)n Simple_repeat Simple_repeat 1 49 0 316 322 23 0 chr12 117640626 117640713 -26145742 + L1MC4 LINE L1 6615 6703 -1339 * 337 289 24 0 chr12 117640646 117640729 -26145726 - L1MC4 LINE L1 -1340 6702 6618 204 97 0 0 chr12 117640729 117640760 -26145695 + (CA)n Simple_repeat Simple_repeat 2 32 0 772 282 82 16 chr12 117641629 117641874 -26144581 - MIR SINE MIR -1 261 1 208 274 85 28 chr12 117641913 117642019 -26144436 + MIR SINE MIR 140 251 -11 1981 129 31 0 chr12 117642020 117642306 -26144149 + AluJb SINE Alu 5 299 -13 651 268 50 54 chr12 117642334 117642547 -26143908 + MIR SINE MIR 2 215 -47 2216 111 0 3 chr12 117642547 117642836 -26143619 + AluSx SINE Alu 4 291 -21 651 268 50 54 chr12 117642836 117642883 -26143572 + MIR SINE MIR 215 261 -1 1604 117 4 4 chr12 117643268 117643499 -26142956 + AluJb SINE Alu 1 231 -81 26 0 0 0 chr12 117643525 117643551 -26142904 + AT_rich Low_complexity Low_complexity 1 26 0 2337 79 14 0 chr12 117644079 117644370 -26142085 - AluSc SINE Alu -14 295 1 190 264 153 14 chr12 117644608 117644680 -26141775 - L2 LINE L2 0 3313 3232 205 178 0 22 chr12 117644692 117644737 -26141718 + C-rich Low_complexity Low_complexity 3 46 0 2177 117 0 13 chr12 117644770 117645069 -26141386 + AluSx SINE Alu 1 295 -17 1992 148 0 23 chr12 117645371 117645674 -26140781 + AluSx SINE Alu 2 297 -15 2671 138 10 33 chr12 117645702 117645949 -26140506 + L1MA3 LINE L1 5832 6064 -241 2473 92 0 0 chr12 117645949 117646252 -26140203 + AluSq SINE Alu 1 303 -10 2671 138 10 33 chr12 117646252 117646488 -26139967 + L1MA3 LINE L1 6064 6304 -1 22 0 0 0 chr12 117646549 117646571 -26139884 + AT_rich Low_complexity Low_complexity 1 22 0 391 248 26 53 chr12 117646621 117646734 -26139721 - L2 LINE L2 0 3313 3204 569 240 0 45 chr12 117646886 117647040 -26139415 - L2 LINE L2 -3 3310 3164 615 147 130 3 chr12 117647105 117647186 -26139269 + L1MC3 LINE L1 7504 7573 -214 2670 172 26 8 chr12 117647186 117647681 -26138774 + L1MB3 LINE L1 5679 6182 -1 615 147 130 3 chr12 117647681 117647760 -26138695 + L1MC3 LINE L1 7573 7673 -114 274 143 0 65 chr12 117647800 117647877 -26138578 + L1MC3 LINE L1 7613 7684 -101 2278 96 3 3 chr12 117647909 117648200 -26138255 + AluSx SINE Alu 1 291 -21 282 188 208 7 chr12 117648204 117648348 -26138107 + L1MD3 LINE L1 7613 7994 0 530 296 36 40 chr12 117648474 117648724 -26137731 - L2 LINE L2 -416 2898 2650 282 216 294 0 chr12 117649119 117649221 -26137234 - MIR SINE MIR -11 251 120 530 263 21 32 chr12 117649500 117649686 -26136769 + MIR SINE MIR 9 192 -70 622 294 103 0 chr12 117649764 117649958 -26136497 + MIR SINE MIR 43 256 -6 1804 174 10 7 chr12 117650040 117650339 -26136116 + AluSx SINE Alu 1 300 -12 332 215 13 13 chr12 117650364 117650443 -26136012 - L1MC3 LINE L1 -39 7746 7668 2431 55 0 70 chr12 117650464 117650792 -26135663 - AluY SINE Alu -6 305 1 2572 62 0 10 chr12 117651311 117651618 -26134837 - AluY SINE Alu -7 304 1 1347 137 0 24 chr12 117651634 117651839 -26134616 + AluJo SINE Alu 37 236 -76 1325 172 10 5 chr12 117651841 117652050 -26134405 - AluJb SINE Alu -44 268 59 26 0 0 0 chr12 117652096 117652122 -26134333 + AT_rich Low_complexity Low_complexity 1 26 0 1962 160 0 10 chr12 117652326 117652638 -26133817 + AluJb SINE Alu 1 309 -3 243 282 250 8 chr12 117652897 117653021 -26133434 + L2 LINE L2 3097 3250 -22 1815 227 3 6 chr12 117653875 117654241 -26132214 + MLT1A1 LTR MaLR 1 365 0 711 259 72 0 chr12 117654568 117654761 -26131694 - MER3 DNA MER1_type 0 209 3 287 283 154 12 chr12 117654801 117655041 -26131414 + L1ME4a LINE L1 5839 6112 -9 967 192 136 141 chr12 117655682 117655874 -26130581 + MLT1C LTR MaLR 4 195 -272 351 0 0 0 chr12 117655874 117655913 -26130542 + (CA)n Simple_repeat Simple_repeat 2 40 0 967 192 136 141 chr12 117655913 117655974 -26130481 + MLT1C LTR MaLR 195 255 -212 381 43 0 0 chr12 117655974 117656021 -26130434 + (CA)n Simple_repeat Simple_repeat 2 48 0 967 192 136 141 chr12 117656021 117656037 -26130418 + MLT1C LTR MaLR 255 270 -197 2126 128 0 3 chr12 117656037 117656344 -26130111 + AluSx SINE Alu 11 312 0 967 192 136 141 chr12 117656344 117656577 -26129878 + MLT1C LTR MaLR 270 467 0 2293 113 0 0 chr12 117657006 117657306 -26129149 + AluSx SINE Alu 1 300 -12 1746 156 3 52 chr12 117657561 117657868 -26128587 + AluJo SINE Alu 3 294 -18 1189 176 4 40 chr12 117657911 117658138 -26128317 + MER20 DNA MER1_type 1 219 0 2277 120 0 0 chr12 117659010 117659311 -26127144 + AluSx SINE Alu 1 301 -11 602 248 71 38 chr12 117659313 117659551 -26126904 + MIR SINE MIR 17 262 0 1952 168 7 0 chr12 117659598 117659908 -26126547 + AluJo SINE Alu 1 312 0 1492 87 5 0 chr12 117660136 117660321 -26126134 + AluSp SINE Alu 1 186 -127 2228 113 0 0 chr12 117660384 117660695 -26125760 - AluSq SINE Alu -2 311 1 392 266 37 9 chr12 117660881 117660990 -26125465 - MER81 DNA DNA -2 112 1 517 206 17 11 chr12 117661944 117662119 -26124336 + GA-rich Low_complexity Low_complexity 3 178 0 236 158 0 0 chr12 117662119 117662157 -26124298 + G-rich Low_complexity Low_complexity 3 40 0 858 112 5 48 chr12 117662157 117662345 -26124110 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1732 146 4 0 chr12 117662771 117663092 -26123363 + AluJo SINE Alu 8 329 0 471 194 15 15 chr12 117663337 117663471 -26122984 + CT-rich Low_complexity Low_complexity 3 136 0 358 250 50 17 chr12 117663677 117663797 -26122658 + LTR67 LTR ERVL 434 557 0 2335 97 0 0 chr12 117664293 117664604 -26121851 + AluSx SINE Alu 1 311 -1 216 247 129 11 chr12 117664629 117664722 -26121733 + MIR3 SINE MIR 89 192 -16 1103 211 134 95 chr12 117665357 117665529 -26120926 + L1MC4 LINE L1 7352 7516 -526 1725 153 0 17 chr12 117665529 117665817 -26120638 + AluJb SINE Alu 18 300 -12 1103 211 134 95 chr12 117665817 117666171 -26120284 + L1MC4 LINE L1 7516 7912 -130 2256 94 0 0 chr12 117666171 117666469 -26119986 + AluSx SINE Alu 1 298 -14 1103 211 134 95 chr12 117666469 117666606 -26119849 + L1MC4 LINE L1 7912 8042 0 240 121 0 0 chr12 117666664 117666697 -26119758 + Alu SINE Alu 80 112 -21 202 194 0 0 chr12 117666700 117666736 -26119719 + GA-rich Low_complexity Low_complexity 1 36 0 6157 131 19 49 chr12 117666744 117667858 -26118597 + L1MA3 LINE L1 4152 5298 -1007 1699 183 0 7 chr12 117667858 117668153 -26118302 + AluJo SINE Alu 5 297 -15 6157 131 19 49 chr12 117668153 117668381 -26118074 + L1MA3 LINE L1 5298 5531 -774 2106 114 3 0 chr12 117668381 117668688 -26117767 + AluY SINE Alu 1 308 -3 6157 131 19 49 chr12 117668688 117668996 -26117459 + L1MA3 LINE L1 5531 5847 -458 2239 120 0 0 chr12 117668996 117669305 -26117150 + AluSx SINE Alu 1 309 -3 6157 131 19 49 chr12 117669305 117669790 -26116665 + L1MA3 LINE L1 5847 6237 -68 766 68 0 0 chr12 117669790 117669893 -26116562 + AluSg/x SINE Alu 205 307 -5 269 167 0 0 chr12 117669893 117669947 -26116508 + L1MA3 LINE L1 6252 6305 0 626 248 37 22 chr12 117669998 117670228 -26116227 + MER106B DNA MER1_type 1 1058 -1 1758 163 0 13 chr12 117670733 117671034 -26115421 + AluJo SINE Alu 1 297 -15 227 273 47 31 chr12 117671079 117671207 -26115248 - L3 LINE CR1 -115 1462 1333 1887 145 121 3 chr12 117671600 117671938 -26114517 + MER83B LTR ERV1 1 378 0 229 241 48 24 chr12 117671973 117672056 -26114399 - L1ME4a LINE L1 -82 6039 5955 597 159 0 28 chr12 117672579 117672686 -26113769 + L1MC1 LINE L1 6230 6333 0 761 248 68 0 chr12 117672708 117672930 -26113525 + L1MD3 LINE L1 7723 7959 -36 225 304 32 60 chr12 117673040 117673323 -26113132 + L1ME LINE L1 5544 5818 -303 1954 138 3 0 chr12 117673607 117673903 -26112552 + AluSx SINE Alu 1 297 -15 1822 166 0 10 chr12 117674806 117675119 -26111336 + AluJo SINE Alu 2 311 -1 599 230 61 54 chr12 117675346 117675624 -26110831 + L1ME4a LINE L1 5617 5896 -225 1436 168 16 63 chr12 117675643 117675946 -26110509 - AluJo SINE Alu -14 298 10 400 242 53 15 chr12 117675993 117676125 -26110330 + L1ME4a LINE L1 5967 6103 -18 24 0 0 0 chr12 117676131 117676155 -26110300 + AT_rich Low_complexity Low_complexity 1 24 0 1162 226 5 5 chr12 117676727 117676939 -26109516 - MER58A DNA MER1_type -4 220 9 4437 122 25 2 chr12 117677227 117677966 -26108489 - L1PA14 LINE L1 -32 6129 5344 845 133 0 0 chr12 117678303 117678423 -26108032 + FLAM_C SINE Alu 2 121 -12 2177 108 0 0 chr12 117678874 117679179 -26107276 + AluSx SINE Alu 1 305 -7 1650 167 0 53 chr12 117679370 117679693 -26106762 + AluJb SINE Alu 1 306 -6 1886 139 38 38 chr12 117679705 117680072 -26106383 - L1MB2 LINE L1 -2 6169 5803 247 262 0 0 chr12 117680089 117680150 -26106305 + L1ME LINE L1 5599 5659 -462 1581 115 0 0 chr12 117680159 117680377 -26106078 + AluSx SINE Alu 1 218 -94 239 283 133 40 chr12 117680693 117681091 -26105364 - L2 LINE L2 -85 3228 2732 * 352 296 26 26 chr12 117681083 117681198 -26105257 + MIR SINE MIR 31 145 -117 1991 124 6 19 chr12 117681351 117681665 -26104790 - AluSx SINE Alu 0 312 3 1733 155 0 21 chr12 117681691 117681982 -26104473 - AluJo SINE Alu -19 293 9 236 254 16 16 chr12 117682034 117682097 -26104358 - L2 LINE L2 -604 2710 2648 180 0 0 0 chr12 117682836 117682856 -26103599 + (TGGA)n Simple_repeat Simple_repeat 4 23 0 351 65 0 0 chr12 117682869 117682915 -26103540 + (TA)n Simple_repeat Simple_repeat 2 47 0 1721 146 3 55 chr12 117682915 117683223 -26103232 - AluJb SINE Alu -20 292 1 272 294 128 0 chr12 117683272 117683374 -26103081 - MIR SINE MIR -10 252 138 1235 196 150 4 chr12 117683854 117684114 -26102341 - AluJb SINE Alu 0 302 5 783 115 74 8 chr12 117684398 117684520 -26101935 - FLAM_C SINE Alu -3 130 1 544 238 133 78 chr12 117684615 117685036 -26101419 - HAL1 LINE L1 -141 2366 1923 833 132 0 16 chr12 117685043 117685172 -26101283 + FLAM_C SINE Alu 9 135 -8 695 287 20 20 chr12 117685172 117685416 -26101039 - HAL1 LINE L1 -574 1933 1690 671 188 42 7 chr12 117685489 117685633 -26100822 - HAL1 LINE L1 -679 1828 1680 1059 140 0 0 chr12 117685642 117685806 -26100649 + AluSg/x SINE Alu 137 300 -12 882 158 0 0 chr12 117685809 117685936 -26100519 + AluJo/FRAM SINE Alu 131 257 -55 2957 257 105 46 chr12 117685936 117685992 -26100463 - HAL1 LINE L1 -876 1631 1580 1952 146 3 0 chr12 117685992 117686286 -26100169 + AluSx SINE Alu 1 295 -17 2957 257 105 46 chr12 117686286 117686574 -26099881 - HAL1 LINE L1 -927 1580 1310 2005 134 0 0 chr12 117686574 117686877 -26099578 + AluSx SINE Alu 1 303 0 2957 257 105 46 chr12 117686877 117687299 -26099156 - HAL1 LINE L1 -1197 1310 914 2177 101 0 3 chr12 117687299 117687605 -26098850 + AluSq SINE Alu 1 305 -8 2957 257 105 46 chr12 117687605 117688244 -26098211 - HAL1 LINE L1 -1593 914 140 1950 136 0 7 chr12 117688246 117688548 -26097907 + AluSx SINE Alu 2 301 -11 263 28 28 0 chr12 117688756 117688792 -26097663 + (CA)n Simple_repeat Simple_repeat 2 38 0 854 123 8 0 chr12 117688825 117688955 -26097500 - L1P5 LINE L1 -365 5791 5661 207 0 0 0 chr12 117688955 117688978 -26097477 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1859 116 4 0 chr12 117688980 117689247 -26097208 - AluSx SINE Alu -29 283 16 866 137 14 3 chr12 117689333 117689499 -26096956 - L1P5 LINE L1 -485 5669 5501 402 277 77 19 chr12 117690112 117690267 -26096188 - MIR SINE MIR -70 192 29 2318 84 0 0 chr12 117690418 117690716 -26095739 - AluSx SINE Alu -14 298 1 1102 161 75 0 chr12 117690720 117690919 -26095536 + MER20 DNA MER1_type 6 219 0 389 274 43 8 chr12 117690924 117691041 -26095414 + MIR SINE MIR 33 153 -109 1341 217 14 54 chr12 117691431 117691521 -26094934 + MER58B DNA MER1_type 4 96 -2324 2059 132 0 3 chr12 117691521 117691832 -26094623 - AluSx SINE Alu -2 310 1 1647 180 21 0 chr12 117691835 117692124 -26094331 - AluJo SINE Alu -17 295 1 1341 217 14 54 chr12 117692124 117692379 -26094076 + MER58B DNA MER1_type 98 339 -2 468 227 64 43 chr12 117692405 117692546 -26093909 - MER5B DNA MER1_type -34 144 1 1667 144 41 0 chr12 117692953 117693254 -26093201 + AluJb SINE Alu 1 312 0 284 222 56 78 chr12 117693287 117693377 -26093078 - MIR SINE MIR -71 137 49 262 333 54 39 chr12 117693527 117693656 -26092799 + MIR SINE MIR 132 262 0 1644 180 10 3 chr12 117693985 117694274 -26092181 - AluJo SINE Alu -19 293 3 1081 139 6 0 chr12 117694279 117694445 -26092010 - FAM SINE Alu -8 167 1 1412 194 45 26 chr12 117694518 117694827 -26091628 - MER58B DNA MER1_type 0 341 27 301 212 103 55 chr12 117694900 117695046 -26091409 + L1ME4a LINE L1 5941 6093 -28 377 233 248 16 chr12 117696420 117696549 -26089906 - MIR SINE MIR -71 191 33 1866 139 17 0 chr12 117696566 117696860 -26089595 + AluSx SINE Alu 1 299 -13 767 131 7 35 chr12 117697004 117697149 -26089306 + LTR49 LTR ERV1 455 595 0 428 125 0 0 chr12 117697149 117697221 -26089234 + L1MA4A LINE L1 6219 6290 -13 1984 132 0 7 chr12 117697235 117697545 -26088910 + AluSx SINE Alu 1 308 -4 1892 150 13 0 chr12 117697580 117697887 -26088568 + AluJb SINE Alu 1 311 -1 522 118 0 0 chr12 117698582 117698658 -26087797 - MADE1 DNA Mariner -4 76 1 2309 89 0 19 chr12 117699241 117699588 -26086867 + AluSg SINE Alu 1 341 0 278 297 0 0 chr12 117700269 117700343 -26086112 - MIR SINE MIR -82 180 107 522 294 105 18 chr12 117700407 117700635 -26085820 - MIR SINE MIR -2 260 13 222 269 93 65 chr12 117700704 117700812 -26085643 + L2 LINE L2 3162 3272 0 769 131 0 0 chr12 117700940 117701047 -26085408 - FRAM SINE Alu -30 146 40 206 239 22 0 chr12 117701471 117701517 -26084938 + MIR3 SINE MIR 111 157 -51 234 128 0 0 chr12 117701692 117701731 -26084724 + (CA)n Simple_repeat Simple_repeat 2 40 0 269 204 37 0 chr12 117701757 117701811 -26084644 - MIR SINE MIR -10 252 197 511 201 146 11 chr12 117701811 117702050 -26084405 - MER46C DNA MER2_type -3 335 20 354 162 0 0 chr12 117702664 117702738 -26083717 + (TTCA)n Simple_repeat Simple_repeat 4 77 0 388 251 46 69 chr12 117702803 117702978 -26083477 - L2 LINE L2 0 3313 3143 1443 157 20 68 chr12 117702979 117703273 -26083182 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr12 117703274 117703301 -26083154 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 212 268 37 112 chr12 117703326 117703468 -26082987 - L2 LINE L2 -178 3135 3021 808 142 136 37 chr12 117703468 117703549 -26082906 - MER45A DNA AcHobo -1403 178 106 1769 181 0 0 chr12 117703549 117703852 -26082603 + AluJb SINE Alu 1 303 -9 808 142 136 37 chr12 117703852 117703932 -26082523 - MER45A DNA AcHobo -1475 106 1 212 268 37 112 chr12 117703932 117704058 -26082397 - L2 LINE L2 -292 3021 2887 1950 113 0 33 chr12 117704505 117704805 -26081650 - AluSg SINE Alu -20 290 1 1325 153 21 0 chr12 117704973 117705209 -26081246 + L1PB4 LINE L1 5909 6149 -7 1275 199 143 60 chr12 117705211 117705463 -26080992 + LTR54 LTR ERV1 5 235 -275 2146 107 0 25 chr12 117705463 117705781 -26080674 + AluSg SINE Alu 1 310 0 1275 199 143 60 chr12 117705781 117705995 -26080460 + LTR54 LTR ERV1 235 510 0 1882 135 3 3 chr12 117706189 117706493 -26079962 - AluSx SINE Alu 0 304 1 690 145 105 0 chr12 117706496 117706620 -26079835 - FLAM_C SINE Alu 0 143 7 1909 154 0 3 chr12 117707039 117707344 -26079111 - AluJb SINE Alu -8 304 1 348 250 0 0 chr12 117707345 117707417 -26079038 - MIR SINE MIR -56 152 81 2231 111 3 0 chr12 117707657 117707964 -26078491 + AluSx SINE Alu 1 308 -4 1863 166 0 3 chr12 117708253 117708555 -26077900 - AluJo SINE Alu -8 304 4 533 195 87 34 chr12 117708567 117708716 -26077739 - MIR3 SINE MIR -47 161 5 344 248 27 40 chr12 117708953 117709102 -26077353 + L1ME4a LINE L1 5964 6110 -11 198 0 0 0 chr12 117709306 117709328 -26077127 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1815 140 26 23 chr12 117709328 117709636 -26076819 + AluJo SINE Alu 1 309 -3 2228 141 0 0 chr12 117709844 117710149 -26076306 - AluSx SINE Alu -7 305 1 1203 21 0 0 chr12 117710166 117710308 -26076147 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 263 264 99 11 chr12 117711236 117711327 -26075128 + MIR SINE MIR 32 130 -78 1564 167 48 6 chr12 117711336 117711647 -26074808 + L1MB8 LINE L1 5846 6169 -9 1824 132 71 0 chr12 117711651 117711931 -26074524 - AluSg SINE Alu -10 300 1 273 299 149 0 chr12 117712109 117712216 -26074239 + L2 LINE L2 3190 3312 -1 2211 118 3 19 chr12 117712320 117712635 -26073820 + AluSx SINE Alu 1 310 -2 558 182 0 0 chr12 117712639 117712727 -26073728 + AluSg/x SINE Alu 203 290 -22 2091 132 0 0 chr12 117712851 117713146 -26073309 - AluSx SINE Alu -17 295 1 5219 181 58 65 chr12 117713381 117714413 -26072042 + L1M3 LINE L1 3849 4857 -1323 2518 73 0 7 chr12 117714413 117714715 -26071740 + AluY SINE Alu 1 300 -11 5219 181 58 65 chr12 117714715 117715537 -26070918 + L1M3 LINE L1 4857 5684 -496 1196 193 9 5 chr12 117715586 117715804 -26070651 - MER20 DNA MER1_type 0 219 1 262 346 54 8 chr12 117716310 117716440 -26070015 + L2 LINE L2 3124 3259 -13 892 208 6 11 chr12 117716441 117716619 -26069836 + AluJb SINE Alu 136 312 0 180 77 0 0 chr12 117716633 117716659 -26069796 + (A)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr12 117716659 117716687 -26069768 + (TA)n Simple_repeat Simple_repeat 2 29 0 1784 155 0 0 chr12 117716993 117717257 -26069198 + AluJb SINE Alu 1 264 -48 267 31 0 0 chr12 117717257 117717289 -26069166 + (GA)n Simple_repeat Simple_repeat 1 32 0 331 152 0 45 chr12 117717844 117717910 -26068545 + MIR SINE MIR 91 153 -109 2319 107 3 3 chr12 117718059 117718359 -26068096 + AluSx SINE Alu 1 300 -12 224 271 174 14 chr12 117719927 117720071 -26066384 - MIR3 SINE MIR -26 182 16 729 237 10 31 chr12 117720133 117720327 -26066128 + MIR SINE MIR 41 230 -32 396 283 21 41 chr12 117720407 117720552 -26065903 + MIR SINE MIR 63 204 -58 193 176 0 0 chr12 117721134 117721168 -26065287 - MIR SINE MIR -32 230 197 689 153 119 0 chr12 117721408 117721526 -26064929 - FLAM_C SINE Alu -1 132 1 800 186 0 0 chr12 117721588 117721712 -26064743 + FLAM_C SINE Alu 3 126 -17 2244 100 0 17 chr12 117721885 117722208 -26064247 + AluSq SINE Alu 1 313 0 1066 116 0 0 chr12 117722208 117722354 -26064101 + AluSg/x SINE Alu 134 279 -33 226 307 73 58 chr12 117722402 117722539 -26063916 - L2 LINE L2 -181 3091 2953 1346 158 0 65 chr12 117722906 117723153 -26063302 - AluSg/x SINE Alu -11 299 69 419 285 32 16 chr12 117723206 117723329 -26063126 - MIR3 SINE MIR -47 161 37 250 227 0 0 chr12 117723740 117723784 -26062671 + L2 LINE L2 3219 3262 -10 1904 159 0 31 chr12 117723801 117724121 -26062334 - AluJo SINE Alu 0 312 3 291 291 99 43 chr12 117724438 117724579 -26061876 - L2 LINE L2 0 3272 3124 503 226 169 0 chr12 117724683 117724860 -26061595 + MIR SINE MIR 1 207 -55 200 278 0 19 chr12 117724879 117724933 -26061522 - MIR SINE MIR -8 254 202 389 333 25 0 chr12 117724943 117725063 -26061392 + L2 LINE L2 2583 2705 -609 667 230 112 142 chr12 117725077 117725510 -26060945 + L1MC5 LINE L1 6687 7131 -830 2031 144 7 3 chr12 117725510 117725808 -26060647 + AluJb SINE Alu 1 299 -13 190 0 67 0 chr12 117725813 117725843 -26060612 + (CAA)n Simple_repeat Simple_repeat 2 33 0 667 230 112 142 chr12 117725843 117726535 -26059920 + L1MC5 LINE L1 7135 7784 -177 1625 117 53 57 chr12 117726535 117726818 -26059637 + AluJb SINE Alu 1 282 -30 2238 118 0 3 chr12 117726818 117727114 -26059341 - AluSx SINE Alu -17 295 1 225 65 0 0 chr12 117727131 117727162 -26059293 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2588 54 3 0 chr12 117727327 117727623 -26058832 - AluY SINE Alu -14 297 1 21 0 0 0 chr12 117727623 117727644 -26058811 + AT_rich Low_complexity Low_complexity 1 21 0 316 308 38 66 chr12 117727873 117727931 -26058524 - MIR SINE MIR -2 260 202 1553 159 144 0 chr12 117727931 117728195 -26058260 - AluJo SINE Alu 0 302 1 316 308 38 66 chr12 117728195 117728347 -26058108 - MIR SINE MIR -60 202 56 382 232 96 48 chr12 117728642 117728767 -26057688 + L2 LINE L2 3174 3304 -9 208 189 0 0 chr12 117729064 117729101 -26057354 + L2 LINE L2 3181 3217 -96 2323 111 0 0 chr12 117729287 117729584 -26056871 + AluSx SINE Alu 4 300 -12 331 337 269 0 chr12 117729585 117729760 -26056695 - MIR SINE MIR -8 254 33 318 148 0 0 chr12 117729939 117729993 -26056462 + (CA)n Simple_repeat Simple_repeat 2 55 0 362 136 15 0 chr12 117730189 117730255 -26056200 - MER103 DNA DNA -41 125 59 2204 113 7 0 chr12 117730613 117730905 -26055550 - AluSx SINE Alu -14 298 5 2192 121 3 0 chr12 117730918 117731215 -26055240 - AluSx SINE Alu -14 298 1 413 259 64 61 chr12 117731265 117731453 -26055002 + MIR SINE MIR 5 192 -65 2345 124 0 0 chr12 117731810 117732117 -26054338 + AluSx SINE Alu 1 307 -5 1963 43 0 17 chr12 117732474 117732707 -26053748 + AluY SINE Alu 1 229 -82 362 205 26 0 chr12 117732745 117732823 -26053632 - MER81 DNA DNA -32 82 3 2216 127 16 0 chr12 117733134 117733441 -26053014 - AluSx SINE Alu 0 312 1 213 39 0 0 chr12 117733453 117733479 -26052976 + (A)n Simple_repeat Simple_repeat 1 26 0 263 291 219 32 chr12 117735191 117735393 -26051062 + MIR SINE MIR 3 246 -16 1744 140 24 61 chr12 117735643 117735961 -26050494 - AluJo SINE Alu 0 307 1 259 253 80 0 chr12 117736054 117736129 -26050326 + MER5B DNA MER1_type 60 140 -38 1198 201 34 0 chr12 117736335 117736544 -26049911 + AluJo SINE Alu 85 300 -12 1255 187 116 16 chr12 117737377 117737687 -26048768 + MER58B DNA MER1_type 1 341 0 2097 73 80 28 chr12 117737814 117738103 -26048352 - AluSp SINE Alu -9 304 1 351 297 9 27 chr12 117738205 117738316 -26048139 + L1MC4 LINE L1 6591 6699 -1343 43 56 0 0 chr12 117738326 117738397 -26048058 + AT_rich Low_complexity Low_complexity 1 71 0 1442 121 10 0 chr12 117738780 117738978 -26047477 + AluSg/x SINE Alu 113 312 0 2304 59 62 14 chr12 117740734 117741022 -26045433 - AluSc SINE Alu -7 302 1 1318 144 38 49 chr12 117741329 117741592 -26044863 - Tigger5 DNA MER2_type 0 2323 2064 1637 198 4 7 chr12 117741592 117741870 -26044585 + AluJo SINE Alu 1 277 -35 1858 174 10 3 chr12 117741870 117742172 -26044283 - AluJb SINE Alu -6 306 1 226 137 59 39 chr12 117742236 117742287 -26044168 - Tigger5 DNA MER2_type -2266 57 6 338 349 123 14 chr12 117742293 117742505 -26043950 + L1MC4a LINE L1 5665 5899 -1909 207 0 0 0 chr12 117742650 117742673 -26043782 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2449 92 10 0 chr12 117742699 117743005 -26043450 + AluSp SINE Alu 1 309 -4 2082 131 0 13 chr12 117743019 117743317 -26043138 + AluJb SINE Alu 1 294 -18 1908 175 42 15 chr12 117743322 117743588 -26042867 - MER7A DNA MER2_type -2693 345 88 405 102 0 0 chr12 117743588 117743647 -26042808 + (TA)n Simple_repeat Simple_repeat 1 59 0 1591 124 124 19 chr12 117743647 117743907 -26042548 - AluSg1 SINE Alu -21 288 1 1908 175 42 15 chr12 117743907 117743982 -26042473 - MER7A DNA MER2_type -2949 89 2 691 251 34 11 chr12 117744171 117744346 -26042109 + MIR SINE MIR 14 192 -70 2077 124 10 3 chr12 117745310 117745601 -26040854 + AluSx SINE Alu 1 293 -19 455 272 171 18 chr12 117745872 117746100 -26040355 - L2 LINE L2 -688 2626 2364 2040 119 19 19 chr12 117746176 117746487 -26039968 + AluSx SINE Alu 1 311 -1 201 121 0 0 chr12 117746874 117746907 -26039548 + (A)n Simple_repeat Simple_repeat 1 33 0 350 137 0 0 chr12 117747204 117747255 -26039200 - MER52C LTR ERV1 -1227 51 1 2408 94 0 13 chr12 117747268 117747576 -26038879 + AluSx SINE Alu 1 304 -8 1002 133 44 0 chr12 117748034 117748192 -26038263 - AluSg/x SINE Alu -11 299 135 1047 161 41 41 chr12 117748198 117748416 -26038039 + MER20 DNA MER1_type 1 218 -1 282 254 23 119 chr12 117748714 117748800 -26037655 - L1ME LINE L1 -461 5660 5567 1692 177 0 13 chr12 117748800 117749100 -26037355 - AluJo SINE Alu -16 296 1 282 254 23 119 chr12 117749100 117749134 -26037321 - L1ME LINE L1 -554 5567 5560 2250 67 88 0 chr12 117749134 117749417 -26037038 + AluSc SINE Alu 1 308 -1 282 254 23 119 chr12 117749417 117749472 -26036983 - L1ME LINE L1 -561 5560 5501 189 292 0 0 chr12 117749540 117749588 -26036867 + L3 LINE CR1 1422 1469 -108 1989 117 53 0 chr12 117750447 117750729 -26035726 - AluSx SINE Alu -15 297 1 849 175 0 7 chr12 117753147 117753301 -26033154 + FRAM SINE Alu 1 146 -30 230 167 62 0 chr12 117753391 117753439 -26033016 + Alu SINE Alu 3 53 -249 1813 75 36 159 chr12 117753488 117753821 -26032634 - AluSx SINE Alu -10 292 1 194 255 53 32 chr12 117754037 117754131 -26032324 + L2 LINE L2 2472 2567 -747 2339 100 0 6 chr12 117754211 117754522 -26031933 + AluSx SINE Alu 1 309 -3 338 304 72 52 chr12 117754728 117754978 -26031477 + L2 LINE L2 3009 3263 -50 566 189 101 108 chr12 117755006 117755248 -26031207 + L1ME1 LINE L1 5594 5825 -341 1701 156 20 30 chr12 117755248 117755543 -26030912 + AluJb SINE Alu 1 292 -20 566 189 101 108 chr12 117755543 117755614 -26030841 + L1ME1 LINE L1 5825 5895 -271 1953 166 25 22 chr12 117755615 117755971 -26030484 - MSTC LTR MaLR -71 357 1 745 226 47 5 chr12 117755971 117756161 -26030294 + L1ME1 LINE L1 5911 6108 -58 258 190 0 52 chr12 117756161 117756219 -26030236 - L2 LINE L2 -88 3225 3171 2043 145 0 13 chr12 117756226 117756537 -26029918 + AluJo SINE Alu 1 307 -5 523 309 129 9 chr12 117756570 117756803 -26029652 - MIR SINE MIR 0 262 2 378 210 37 0 chr12 117757316 117757397 -26029058 + MIR3 SINE MIR 87 170 -38 2042 127 0 7 chr12 117757586 117757894 -26028561 - AluSx SINE Alu 0 306 1 663 306 31 18 chr12 117758464 117758686 -26027769 + MIR SINE MIR 8 232 -30 314 236 228 81 chr12 117758981 117759008 -26027447 - MER5B DNA MER1_type -36 142 120 1901 156 13 19 chr12 117759008 117759322 -26027133 + AluJo SINE Alu 1 312 0 314 236 228 81 chr12 117759322 117759417 -26027038 - MER5B DNA MER1_type -58 120 2 * 477 183 202 0 chr12 117759413 117759517 -26026938 - L2 LINE L2 -3 3310 3186 212 306 153 18 chr12 117759550 117759661 -26026794 + L2 LINE L2 3188 3313 0 438 267 52 0 chr12 117759713 117759829 -26026626 + L2 LINE L2 3148 3269 -3 25 0 0 0 chr12 117761414 117761439 -26025016 + AT_rich Low_complexity Low_complexity 1 25 0 1095 248 49 4 chr12 117762104 117762350 -26024105 + MIR SINE MIR 6 262 0 188 337 128 0 chr12 117762899 117762985 -26023470 + MIR SINE MIR 35 131 -77 279 54 0 0 chr12 117763029 117763066 -26023389 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 336 110 0 68 chr12 117763158 117763231 -26023224 - MER3 DNA MER1_type 0 209 142 28 61 0 0 chr12 117763249 117763298 -26023157 + AT_rich Low_complexity Low_complexity 1 49 0 1899 116 32 11 chr12 117763313 117763597 -26022858 + AluSx SINE Alu 1 290 -22 853 124 0 78 chr12 117763618 117763723 -26022732 - MER3 DNA MER1_type -21 141 50 2048 125 26 47 chr12 117763723 117764067 -26022388 - MER1B DNA MER1_type 0 337 1 853 124 0 78 chr12 117764067 117764114 -26022341 - MER3 DNA MER1_type -112 50 1 1165 146 23 46 chr12 117764195 117764414 -26022041 + AluJo SINE Alu 87 300 -12 558 283 84 27 chr12 117764457 117764718 -26021737 - L2 LINE L2 -212 3060 2776 471 280 92 19 chr12 117764836 117765043 -26021412 + MIR SINE MIR 6 227 -35 1406 242 122 24 chr12 117765196 117765341 -26021114 + L2 LINE L2 2341 2470 -843 1579 151 40 4 chr12 117765341 117765635 -26020820 - AluSx SINE Alu 0 304 1 1406 242 122 24 chr12 117765635 117766097 -26020358 + L2 LINE L2 2470 3083 -230 1605 160 30 48 chr12 117766099 117766140 -26020315 + L1MB3 LINE L1 5452 5492 -679 1722 174 0 10 chr12 117766140 117766450 -26020005 + AluJo SINE Alu 1 307 -5 1605 160 30 48 chr12 117766450 117766740 -26019715 + L1MB3 LINE L1 5492 5777 -394 2025 133 25 73 chr12 117766787 117766850 -26019605 + L1MB3 LINE L1 5769 5833 -350 1852 144 10 13 chr12 117766850 117767156 -26019299 + AluSg SINE Alu 1 305 -5 2025 133 25 73 chr12 117767156 117767476 -26018979 + L1MB3 LINE L1 5833 6131 -52 2050 131 3 0 chr12 117767476 117767773 -26018682 + AluSx SINE Alu 1 298 -14 2025 133 25 73 chr12 117767773 117767824 -26018631 + L1MB3 LINE L1 6131 6183 0 317 270 184 12 chr12 117767841 117768004 -26018451 + L2 LINE L2 3077 3267 -46 1730 162 0 7 chr12 117768230 117768520 -26017935 - AluJo SINE Alu -24 288 1 34 0 0 0 chr12 117768590 117768624 -26017831 + AT_rich Low_complexity Low_complexity 1 34 0 3565 102 31 36 chr12 117768625 117768871 -26017584 - L1MA8 LINE L1 -7 6284 6038 2121 112 7 0 chr12 117768871 117769166 -26017289 - AluSx SINE Alu -15 297 1 3565 102 31 36 chr12 117769166 117769508 -26016947 - L1MA8 LINE L1 -253 6038 5699 1915 135 0 10 chr12 117769956 117770253 -26016202 + AluSx SINE Alu 7 300 -12 1650 158 41 0 chr12 117770365 117770656 -26015799 + AluJo SINE Alu 1 303 -9 190 206 0 0 chr12 117770837 117770871 -26015584 + MIR SINE MIR 82 115 -147 27 29 0 0 chr12 117770989 117771023 -26015432 + AT_rich Low_complexity Low_complexity 1 34 0 938 162 0 30 chr12 117771023 117771190 -26015265 - FRAM SINE Alu -3 163 2 1211 148 32 19 chr12 117771231 117771447 -26015008 - MER20 DNA MER1_type 0 219 1 1647 78 0 9 chr12 117771453 117771671 -26014784 + AluSq SINE Alu 1 216 -97 2255 106 0 0 chr12 117771906 117772217 -26014238 + AluSx SINE Alu 1 311 -1 671 356 16 4 chr12 117772328 117772575 -26013880 + MIR SINE MIR 13 262 0 227 270 0 16 chr12 117772714 117772777 -26013678 - MIR3 SINE MIR -1 207 146 369 248 88 58 chr12 117772820 117772957 -26013498 - MER5A DNA MER1_type -2 187 47 436 332 47 67 chr12 117772994 117773119 -26013336 + MIR SINE MIR 15 134 -128 1831 150 3 0 chr12 117773119 117773406 -26013049 - AluJo SINE Alu -18 294 7 436 332 47 67 chr12 117773406 117773533 -26012922 + MIR SINE MIR 134 262 0 608 290 41 16 chr12 117773557 117773802 -26012653 - L3 LINE CR1 -107 1470 1220 221 253 22 134 chr12 117774135 117774245 -26012210 + L2 LINE L2 2556 2677 -595 2647 206 7 18 chr12 117774245 117774807 -26011648 + MER74A LTR ERVL 1 556 -2 221 253 22 134 chr12 117774807 117774821 -26011634 + L2 LINE L2 2677 2691 -581 1912 126 4 0 chr12 117774821 117775125 -26011330 + AluSq SINE Alu 5 309 0 221 253 22 134 chr12 117775125 117775371 -26011084 + L2 LINE L2 2691 2957 -315 339 268 49 0 chr12 117775440 117775522 -26010933 + MIR SINE MIR 100 185 -77 298 318 81 30 chr12 117775552 117775750 -26010705 + L2 LINE L2 3106 3313 0 750 257 29 19 chr12 117775755 117775961 -26010494 - MIR SINE MIR -34 228 21 1959 132 0 0 chr12 117776131 117776412 -26010043 + AluSx SINE Alu 1 281 -31 326 23 23 0 chr12 117776413 117776456 -26009999 + (AAATG)n Simple_repeat Simple_repeat 2 45 0 1487 156 78 11 chr12 117776466 117776748 -26009707 + AluJb SINE Alu 1 301 -11 1791 160 3 0 chr12 117777251 117777551 -26008904 + AluJo SINE Alu 1 301 -11 355 257 229 0 chr12 117778030 117778135 -26008320 - MER5A DNA MER1_type 0 189 61 281 106 0 0 chr12 117778138 117778185 -26008270 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 43797 33 22 1 chr12 117778198 117784223 -26002232 - L1PA2 LINE L1 -5 6150 1 1847 159 0 3 chr12 117784227 117784522 -26001933 - AluJo SINE Alu -18 294 1 297 213 13 40 chr12 117784523 117784589 -26001866 - MER5A DNA MER1_type -114 75 10 1826 163 10 0 chr12 117784589 117784895 -26001560 - AluSx SINE Alu -3 309 1 662 240 0 0 chr12 117784955 117785084 -26001371 - FLAM_C SINE Alu -13 130 2 378 143 0 0 chr12 117785149 117785212 -26001243 + (TG)n Simple_repeat Simple_repeat 1 63 0 237 73 0 24 chr12 117785212 117785253 -26001202 - L1MB4 LINE L1 -3 6177 6138 1992 108 3 42 chr12 117785257 117785564 -26000891 - AluSx SINE Alu -17 295 1 304 198 325 48 chr12 117785625 117785751 -26000704 + MER5A DNA MER1_type 3 163 -26 323 222 60 103 chr12 117785804 117785989 -26000466 - MER5B DNA MER1_type 0 178 2 200 337 89 0 chr12 117785997 117786098 -26000357 + L2 LINE L2 3155 3264 -8 189 0 0 0 chr12 117786188 117786209 -26000246 + (CA)n Simple_repeat Simple_repeat 1 21 0 222 260 0 0 chr12 117786660 117786710 -25999745 - MIR3 SINE MIR -8 200 151 226 283 7 32 chr12 117786729 117786853 -25999602 - MER5A DNA MER1_type -21 168 3 * 375 210 37 0 chr12 117786853 117786922 -25999533 - MIR3 SINE MIR -50 158 87 493 313 129 9 chr12 117787435 117787668 -25998787 + MIR SINE MIR 2 262 0 1892 145 0 13 chr12 117787701 117788012 -25998443 - AluJo SINE Alu -5 307 1 257 190 0 52 chr12 117788019 117788077 -25998378 + L2 LINE L2 3171 3225 -88 794 226 47 5 chr12 117788077 117788267 -25998188 - L1ME1 LINE L1 -58 6108 5911 2130 157 25 22 chr12 117788267 117788623 -25997832 + MSTC LTR MaLR 1 357 -71 654 192 102 97 chr12 117788624 117788695 -25997760 - L1ME1 LINE L1 -271 5895 5826 1547 159 20 30 chr12 117788695 117788990 -25997465 - AluJb SINE Alu -20 292 1 654 192 102 97 chr12 117788990 117789229 -25997226 - L1ME1 LINE L1 -340 5826 5594 352 300 72 52 chr12 117789257 117789507 -25996948 - L2 LINE L2 -50 3263 3009 2189 100 0 6 chr12 117789713 117790024 -25996431 - AluSx SINE Alu -3 309 1 190 255 53 32 chr12 117790104 117790198 -25996257 - L2 LINE L2 -747 2567 2472 1947 136 3 19 chr12 117790414 117790730 -25995725 + AluSx SINE Alu 1 311 -1 545 182 0 0 chr12 117790734 117790822 -25995633 + AluSg/x SINE Alu 203 290 -22 1963 129 0 0 chr12 117790946 117791241 -25995214 - AluSx SINE Alu -17 295 1 5494 180 58 65 chr12 117791476 117792508 -25993947 + L1M3 LINE L1 3849 4857 -1323 2386 72 0 7 chr12 117792508 117792812 -25993643 + AluY SINE Alu 1 302 -9 5494 180 58 65 chr12 117792812 117793634 -25992821 + L1M3 LINE L1 4857 5684 -496 1167 193 9 5 chr12 117793683 117793901 -25992554 - MER20 DNA MER1_type 0 219 1 276 339 54 8 chr12 117794407 117794537 -25991918 + L2 LINE L2 3124 3259 -13 833 225 6 11 chr12 117794538 117794716 -25991739 + AluJb SINE Alu 136 312 0 219 36 0 0 chr12 117794743 117794771 -25991684 + (TA)n Simple_repeat Simple_repeat 2 29 0 1657 155 0 0 chr12 117795077 117795341 -25991114 + AluJb SINE Alu 1 264 -48 231 36 0 0 chr12 117795341 117795369 -25991086 + (GA)n Simple_repeat Simple_repeat 1 28 0 332 152 0 45 chr12 117795924 117795990 -25990465 + MIR SINE MIR 91 153 -109 1356 69 23 74 chr12 117796183 117796263 -25990192 + MER75B DNA T2_type 39 122 -382 838 122 0 65 chr12 117796263 117796402 -25990053 + AluJo/FLAM SINE Alu 1 130 -172 1976 114 35 0 chr12 117796402 117796691 -25989764 + AluSx SINE Alu 1 299 -13 1356 69 23 74 chr12 117796691 117796825 -25989630 + MER75B DNA T2_type 120 243 0 228 310 0 0 chr12 117797052 117797123 -25989332 - L1ME4a LINE L1 -82 6039 5969 496 216 0 0 chr12 117797274 117797362 -25989093 - 5S rRNA rRNA -31 90 3 2029 121 13 0 chr12 117797538 117797843 -25988612 + AluSx SINE Alu 1 309 -3 1840 154 0 10 chr12 117797852 117798158 -25988297 + AluSx SINE Alu 1 303 -9 249 309 24 0 chr12 117798170 117798254 -25988201 + MER103 DNA DNA 70 155 -11 711 304 82 7 chr12 117798291 117798597 -25987858 - L1ME4a LINE L1 -446 5675 5347 2236 84 7 10 chr12 117798761 117799060 -25987395 - AluSp SINE Alu -15 298 1 22 35 0 0 chr12 117800136 117800165 -25986290 + AT_rich Low_complexity Low_complexity 1 29 0 1764 163 0 0 chr12 117800856 117801177 -25985278 + AluSx SINE Alu 1 321 0 659 233 120 70 chr12 117801278 117801652 -25984803 + L2 LINE L2 2911 3303 -10 2104 98 20 0 chr12 117801652 117801947 -25984508 + AluSx SINE Alu 1 301 -11 351 113 0 0 chr12 117801947 117802000 -25984455 + (TA)n Simple_repeat Simple_repeat 1 53 0 247 289 12 12 chr12 117802251 117802334 -25984121 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 747 185 176 12 chr12 117802506 117802739 -25983716 + MIR SINE MIR 3 260 -2 1742 153 3 31 chr12 117802789 117803110 -25983345 - AluJb SINE Alu 0 312 1 354 261 217 25 chr12 117803256 117803459 -25982996 - MIR SINE MIR -7 255 14 205 152 0 0 chr12 117804694 117804727 -25981728 + (CCG)n Simple_repeat Simple_repeat 1 33 0 478 276 117 37 chr12 117805180 117805394 -25981061 - MIR SINE MIR -2 260 30 1099 165 96 60 chr12 117805395 117805479 -25980976 - MER33 DNA MER1_type -2263 322 243 2236 100 0 0 chr12 117805479 117805778 -25980677 + AluSx SINE Alu 1 299 -13 1956 115 0 44 chr12 117805778 117806099 -25980356 + AluSx SINE Alu 1 307 -5 1099 165 96 60 chr12 117806099 117806160 -25980295 - MER33 DNA MER1_type -2342 243 186 640 181 15 23 chr12 117806160 117806293 -25980162 + FLAM_C SINE Alu 1 132 -1 1099 165 96 60 chr12 117806293 117806346 -25980109 - MER33 DNA MER1_type -2399 186 136 1972 76 69 7 chr12 117806346 117806622 -25979833 - AluSg SINE Alu -17 293 1 1099 165 96 60 chr12 117806622 117806743 -25979712 - MER33 DNA MER1_type -2449 136 1 397 179 205 0 chr12 117806882 117806994 -25979461 - Charlie1 DNA MER1_type 0 2761 2627 2196 100 0 0 chr12 117807026 117807335 -25979120 - AluSg SINE Alu -1 309 1 3802 130 49 16 chr12 117807336 117807511 -25978944 + Tigger1 DNA MER2_type 3 171 -2247 1967 144 0 3 chr12 117807511 117807816 -25978639 - AluSx SINE Alu -8 304 1 3802 130 49 16 chr12 117807816 117808253 -25978202 + Tigger1 DNA MER2_type 171 635 -1783 2059 132 40 6 chr12 117808253 117808578 -25977877 + MER49 LTR ERV1 1 336 -587 1832 91 0 8 chr12 117808578 117808832 -25977623 - AluSx SINE Alu 0 312 61 262 213 85 43 chr12 117808832 117808926 -25977529 - L1ME1 LINE L1 -105 6061 5964 894 219 66 26 chr12 117808932 117808964 -25977491 - Charlie1 DNA MER1_type -2522 239 210 1847 137 3 26 chr12 117808964 117809271 -25977184 + AluJb SINE Alu 1 300 -12 894 219 66 26 chr12 117809271 117809466 -25976989 - Charlie1 DNA MER1_type -2551 210 3 806 88 0 26 chr12 117809498 117809611 -25976844 - AluJb SINE Alu -169 143 34 290 244 110 12 chr12 117810218 117810300 -25976155 + MER94 DNA DNA 45 134 0 2251 89 0 3 chr12 117810352 117810634 -25975821 + AluSx SINE Alu 1 311 0 229 67 0 0 chr12 117810634 117810664 -25975791 + (CAA)n Simple_repeat Simple_repeat 1 180 0 1686 154 28 94 chr12 117810722 117810937 -25975518 + MLT2D LTR ERVL 1 229 -291 2201 97 0 44 chr12 117810937 117811257 -25975198 + AluSc SINE Alu 1 306 -3 1686 154 28 94 chr12 117811257 117811442 -25975013 + MLT2D LTR ERVL 229 480 -40 367 121 0 0 chr12 117811523 117811577 -25974878 + MLT2C1 LTR ERVL 350 397 0 411 272 7 0 chr12 117811644 117811798 -25974657 - MIR SINE MIR -38 224 70 395 291 132 42 chr12 117811997 117812071 -25974384 + L1MC4a LINE L1 5305 5371 -2437 2286 72 52 3 chr12 117812071 117812361 -25974094 + AluSx SINE Alu 1 304 -8 395 291 132 42 chr12 117812361 117812575 -25973880 + L1MC4a LINE L1 5371 5619 -2189 3097 146 19 26 chr12 117812637 117812689 -25973766 - L1MB3 LINE L1 0 6183 6132 1815 181 3 0 chr12 117812689 117812992 -25973463 - AluJo SINE Alu -6 306 3 3097 146 19 26 chr12 117812992 117813506 -25972949 - L1MB3 LINE L1 -51 6132 5621 5450 203 31 8 chr12 117813515 117814717 -25971738 - L1MB3 LINE L1 -897 5249 4020 574 278 107 5 chr12 117814712 117814928 -25971527 + L1MC4a LINE L1 5700 5937 -1871 * 267 291 49 66 chr12 117815143 117815387 -25971068 + L1ME4a LINE L1 5852 6091 -30 2237 129 0 0 chr12 117815686 117815995 -25970460 - AluSg SINE Alu -1 309 1 2342 184 92 29 chr12 117816417 117816927 -25969528 + MLT1F LTR MaLR 1 542 0 383 340 13 7 chr12 117816934 117817084 -25969371 + MER5A DNA MER1_type 1 151 -38 2223 117 0 0 chr12 117817441 117817731 -25968724 + AluSc SINE Alu 1 290 -19 1858 204 44 11 chr12 117818083 117818761 -25967694 + L1MB7 LINE L1 4982 5678 -488 1571 182 19 97 chr12 117818764 117818899 -25967556 + L1M4 LINE L1 455 599 -5943 2569 103 76 38 chr12 117818899 117819347 -25967108 + L1PA11 LINE L1 5710 6174 0 1571 182 19 97 chr12 117819347 117819624 -25966831 + L1M4 LINE L1 599 835 -5707 1059 204 21 70 chr12 117819772 117820057 -25966398 - MLT1A2 LTR MaLR -102 272 2 4760 147 46 17 chr12 117820071 117820232 -25966223 - L1MB4 LINE L1 -51 6129 5974 1700 170 23 23 chr12 117820232 117820538 -25965917 - AluJo SINE Alu -6 306 1 4760 147 46 17 chr12 117820538 117821205 -25965250 - L1MB4 LINE L1 -206 5974 5277 2195 118 126 60 chr12 117821209 117821424 -25965031 - MSTB LTR MaLR -2 424 224 2169 131 3 0 chr12 117821424 117821736 -25964719 - AluSq SINE Alu 0 313 1 2195 118 126 60 chr12 117821736 117821918 -25964537 - MSTB LTR MaLR -202 224 1 3697 129 41 0 chr12 117822174 117822731 -25963724 - LTR19B LTR ERV1 0 580 1 492 287 110 0 chr12 117823133 117823297 -25963158 + MIR SINE MIR 22 203 -59 1136 113 160 51 chr12 117823397 117823577 -25962878 + L1MA9 LINE L1 5996 6214 -98 2246 98 3 0 chr12 117823577 117823873 -25962582 - AluSg1 SINE Alu -12 297 1 1136 113 160 51 chr12 117823873 117823948 -25962507 + L1MA9 LINE L1 6214 6279 -33 433 221 10 10 chr12 117823950 117824054 -25962401 + L1MD1 LINE L1 6139 6242 0 24 0 0 0 chr12 117824128 117824152 -25962303 + AT_rich Low_complexity Low_complexity 1 24 0 2023 159 11 16 chr12 117824392 117824770 -25961685 + L1MB4 LINE L1 5581 5956 -224 1226 164 27 0 chr12 117824770 117824786 -25961669 + AluJb SINE Alu 72 86 -226 1560 181 45 31 chr12 117824786 117825073 -25961382 + AluJo SINE Alu 6 296 -16 1226 164 27 0 chr12 117825073 117825275 -25961180 + AluJb SINE Alu 86 296 -16 2392 156 11 47 chr12 117825285 117825754 -25960701 + L1MB7 LINE L1 5680 6131 -53 2743 139 33 16 chr12 117826123 117826576 -25959879 - MER65C LTR ERV1 0 461 1 3688 238 41 57 chr12 117827107 117827404 -25959051 - L1M4c LINE L1 -3173 3209 2909 913 118 0 22 chr12 117827404 117827539 -25958916 + FLAM_C SINE Alu 1 132 -1 3688 238 41 57 chr12 117827539 117828307 -25958148 - L1M4c LINE L1 -3473 2909 2131 2395 87 0 0 chr12 117828307 117828622 -25957833 - AluSc SINE Alu 0 315 1 3688 238 41 57 chr12 117828622 117828841 -25957614 - L1M4c LINE L1 -4251 2131 1910 1623 193 14 3 chr12 117828841 117829126 -25957329 + AluJo SINE Alu 1 288 -24 3688 238 41 57 chr12 117829126 117829256 -25957199 - L1M4c LINE L1 -4472 1910 1780 1957 120 18 0 chr12 117829256 117829539 -25956916 - AluSx SINE Alu -5 307 20 3688 238 41 57 chr12 117829539 117830571 -25955884 - L1M4c LINE L1 -4602 1780 696 583 89 0 0 chr12 117830710 117830789 -25955666 - MER75B DNA T2_type -164 79 1 32 0 0 23 chr12 117830977 117830997 -25955458 + AT_rich Low_complexity Low_complexity 1 20 -22 1691 177 3 13 chr12 117830997 117831296 -25955159 - AluJb SINE Alu -16 296 1 32 0 0 23 chr12 117831296 117831318 -25955137 + AT_rich Low_complexity Low_complexity 20 42 0 1919 148 30 0 chr12 117831518 117831821 -25954634 - AluJb SINE Alu 0 312 1 2461 57 23 3 chr12 117831915 117832214 -25954241 - AluY SINE Alu -6 305 1 4234 152 48 57 chr12 117832288 117832684 -25953771 - L1MB3 LINE L1 -1 6182 5784 2221 129 0 3 chr12 117832684 117832987 -25953468 - AluSx SINE Alu -10 302 1 4234 152 48 57 chr12 117832987 117833461 -25952994 - L1MB3 LINE L1 -399 5784 5312 2221 101 17 3 chr12 117833461 117833757 -25952698 - AluSc SINE Alu -8 301 2 4234 152 48 57 chr12 117833757 117833843 -25952612 - L1MB3 LINE L1 -871 5312 5227 1718 166 3 51 chr12 117833853 117834166 -25952289 - AluSx SINE Alu -14 298 1 466 261 148 43 chr12 117834166 117834396 -25952059 - L1MC/D LINE L1 -1985 5823 5570 587 65 0 0 chr12 117834612 117834689 -25951766 - MER41B LTR ERV1 -88 547 471 680 191 0 0 chr12 117834876 117834986 -25951469 + MER58A DNA MER1_type 1 110 0 647 295 50 39 chr12 117834986 117835343 -25951112 - LTR24B LTR ERV1 -9 567 207 340 173 76 19 chr12 117835382 117835477 -25950978 - LTR24B LTR ERV1 -368 97 1 656 142 15 119 chr12 117835477 117835556 -25950899 + MER58A DNA MER1_type 105 166 -2254 1915 162 14 0 chr12 117835556 117835853 -25950602 + AluJb SINE Alu 1 301 -11 656 142 15 119 chr12 117835853 117835907 -25950548 + MER58A DNA MER1_type 166 224 0 2176 103 3 7 chr12 117835994 117836285 -25950170 + AluSg SINE Alu 5 294 -16 519 303 13 33 chr12 117836695 117837002 -25949453 - AluY SINE Alu 0 301 1 316 250 0 0 chr12 117837603 117837675 -25948780 + MIR SINE MIR 81 152 -56 2023 155 0 3 chr12 117837676 117837980 -25948475 + AluJb SINE Alu 1 303 -9 689 145 105 0 chr12 117838399 117838523 -25947932 + FLAM_C SINE Alu 7 143 0 2029 131 3 3 chr12 117838526 117838831 -25947624 + AluSq SINE Alu 1 305 0 1132 146 49 15 chr12 117839025 117839230 -25947225 - LTR54 LTR ERV1 0 510 299 1892 140 3 55 chr12 117839243 117839571 -25946884 - AluJb SINE Alu -1 311 1 841 225 111 141 chr12 117839571 117840263 -25946192 - L1MC5 LINE L1 -175 7786 7075 190 0 67 0 chr12 117840263 117840293 -25946162 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2001 144 7 3 chr12 117840298 117840596 -25945859 - AluJb SINE Alu -13 299 1 841 225 111 141 chr12 117840596 117841029 -25945426 - L1MC5 LINE L1 -890 7071 6687 338 333 25 0 chr12 117841043 117841163 -25945292 - L2 LINE L2 -609 2705 2583 429 279 57 0 chr12 117841246 117841405 -25945050 - MIR SINE MIR -55 207 41 235 273 91 41 chr12 117841547 117841668 -25944787 + L2 LINE L2 3146 3272 0 1870 159 0 31 chr12 117841985 117842305 -25944150 + AluJo SINE Alu 3 312 0 230 227 0 0 chr12 117842322 117842366 -25944089 - L2 LINE L2 -10 3262 3219 367 285 32 16 chr12 117842782 117842905 -25943550 + MIR3 SINE MIR 37 161 -47 1265 166 0 65 chr12 117842958 117843205 -25943250 + AluSg/x SINE Alu 69 299 -11 1111 113 0 0 chr12 117843757 117843908 -25942547 - AluSg/x SINE Alu -33 279 129 216 0 0 0 chr12 117843917 117843941 -25942514 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2223 99 0 3 chr12 117843943 117844226 -25942229 - AluSq SINE Alu -31 282 1 632 198 0 9 chr12 117844399 117844515 -25941940 - FLAM_C SINE Alu -17 126 12 778 174 0 14 chr12 117844681 117844819 -25941636 - AluSx SINE Alu -164 148 13 2229 133 36 45 chr12 117844819 117844924 -25941531 - L1MB3 LINE L1 -53 6130 6026 570 246 50 72 chr12 117844924 117845274 -25941181 - L1MD1 LINE L1 -221 6021 5678 1933 147 0 31 chr12 117845274 117845593 -25940862 - AluJb SINE Alu -3 309 1 501 275 56 6 chr12 117845714 117845874 -25940581 + MIR SINE MIR 5 172 -90 2140 126 10 0 chr12 117845935 117846236 -25940219 - AluSx SINE Alu -8 304 1 227 268 83 57 chr12 117846846 117847003 -25939452 + L2 LINE L2 3106 3266 -6 274 113 75 0 chr12 117847064 117847117 -25939338 - L1MB3 LINE L1 0 6183 6127 1922 108 93 0 chr12 117847141 117847410 -25939045 + AluSx SINE Alu 1 294 -18 547 193 0 35 chr12 117847410 117847524 -25938931 - FLAM_A SINE Alu -29 113 4 846 170 21 18 chr12 117847571 117847754 -25938701 - L1MB5 LINE L1 -34 6146 5950 891 135 0 8 chr12 117848148 117848281 -25938174 - FLAM_C SINE Alu -1 132 1 700 150 206 11 chr12 117848369 117848549 -25937906 - MER20 DNA MER1_type 0 219 5 195 267 267 14 chr12 117848562 117848783 -25937672 - L2 LINE L2 -233 3080 2804 682 144 119 0 chr12 117848902 117849020 -25937435 + FLAM_C SINE Alu 1 132 -1 336 273 8 30 chr12 117849876 117850028 -25936427 - MIR SINE MIR -58 204 59 644 188 12 31 chr12 117850135 117850295 -25936160 - MIR SINE MIR -65 197 41 2091 127 3 3 chr12 117852076 117852367 -25934088 - AluSx SINE Alu -18 294 4 472 199 71 35 chr12 117852379 117852520 -25933935 - MIR3 SINE MIR -47 161 16 1462 134 5 5 chr12 117852992 117853209 -25933246 - AluJb SINE Alu -95 217 1 1584 257 50 44 chr12 117853212 117853276 -25933179 + MLT2B2 LTR ERVL 5 67 -448 2263 97 0 0 chr12 117853276 117853565 -25932890 - AluY SINE Alu -17 294 6 1584 257 50 44 chr12 117853565 117853956 -25932499 + MLT2B2 LTR ERVL 67 463 -52 21 57 0 0 chr12 117853971 117854006 -25932449 + AT_rich Low_complexity Low_complexity 1 35 0 293 170 0 0 chr12 117854014 117854061 -25932394 + MLT2B2 LTR ERVL 508 554 0 545 264 123 18 chr12 117854173 117854332 -25932123 + HAL1 LINE L1 2242 2432 -75 1793 132 16 53 chr12 117854332 117854635 -25931820 - AluJo SINE Alu -19 293 2 545 264 123 18 chr12 117854635 117854695 -25931760 + HAL1 LINE L1 2432 2484 -23 35 0 0 22 chr12 117854711 117854739 -25931716 + AT_rich Low_complexity Low_complexity 1 29 -16 1964 143 3 0 chr12 117854739 117855026 -25931429 - AluJb SINE Alu -24 288 1 35 0 0 22 chr12 117855026 117855043 -25931412 + AT_rich Low_complexity Low_complexity 29 45 0 333 177 16 0 chr12 117855057 117855119 -25931336 - MLT1A2 LTR MaLR 0 374 312 1706 161 14 28 chr12 117855119 117855405 -25931050 - AluJb SINE Alu -16 296 15 2679 23 0 7 chr12 117856153 117856457 -25929998 - AluY SINE Alu -9 302 1 2371 79 10 0 chr12 117856607 117856899 -25929556 + AluSp SINE Alu 1 295 -18 249 326 23 0 chr12 117858120 117858206 -25928249 - MIR3 SINE MIR -28 180 93 693 250 71 0 chr12 117858991 117859175 -25927280 + Charlie1 DNA MER1_type 30 226 -2535 251 91 0 0 chr12 117859157 117859201 -25927254 - Alu SINE Alu -2 300 257 * 383 305 0 14 chr12 117859373 117859514 -25926941 - L1M4 LINE L1 -5007 1535 1397 1706 111 30 0 chr12 118060030 118060265 -25726190 + AluSq SINE Alu 59 300 -13 512 177 108 0 chr12 118060267 118060397 -25726058 - MER33 DNA MER1_type -26 337 194 2255 127 13 0 chr12 118060406 118060713 -25725742 + AluSq SINE Alu 1 311 -2 884 181 0 0 chr12 118060726 118060896 -25725559 + FLAM_C SINE Alu 1 170 0 323 111 0 32 chr12 118060983 118061046 -25725409 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 545 197 49 0 chr12 118061110 118061232 -25725223 - MER33 DNA MER1_type -191 133 6 847 286 36 0 chr12 118061730 118061954 -25724501 + MIR SINE MIR 2 233 -29 2265 107 0 3 chr12 118062049 118062347 -25724108 + AluSx SINE Alu 9 305 -7 208 324 15 15 chr12 118062353 118062421 -25724034 + MIR SINE MIR 30 97 -111 217 293 123 19 chr12 118062441 118062547 -25723908 - MIR SINE MIR 0 262 146 2315 81 3 0 chr12 118062566 118062849 -25723606 - AluSx SINE Alu -28 284 1 496 254 16 8 chr12 118062850 118062972 -25723483 - MIR SINE MIR -102 160 38 2117 146 0 0 chr12 118063185 118063487 -25722968 - AluSx SINE Alu 0 312 11 210 150 0 0 chr12 118064069 118064109 -25722346 + (GA)n Simple_repeat Simple_repeat 2 41 0 204 260 17 57 chr12 118064147 118064324 -25722131 + (CAGAGA)n Simple_repeat Simple_repeat 6 175 0 2047 150 0 0 chr12 118064324 118064631 -25721824 + AluJb SINE Alu 1 307 -5 291 261 54 15 chr12 118064703 118064833 -25721622 + (CAGAGA)n Simple_repeat Simple_repeat 4 138 0 912 130 0 0 chr12 118064870 118065001 -25721454 + FLAM_C SINE Alu 1 131 -2 490 259 59 6 chr12 118065368 118065538 -25720917 + MER117 DNA MER1_type 18 196 -1 295 161 48 0 chr12 118065574 118065636 -25720819 - MER115 DNA AcHobo -24 669 605 2105 141 23 0 chr12 118065647 118065952 -25720503 + AluJo SINE Alu 1 312 0 2259 111 7 0 chr12 118065981 118066287 -25720168 + AluSx SINE Alu 1 308 -4 345 247 0 26 chr12 118066652 118066729 -25719726 + L2 LINE L2 3197 3271 -1 2235 139 18 6 chr12 118066763 118067102 -25719353 - MER61A LTR ERV1 0 343 1 685 229 40 6 chr12 118067178 118067353 -25719102 - L2 LINE L2 -243 3070 2890 1387 145 0 0 chr12 118067354 118067554 -25718901 + AluSx SINE Alu 2 201 -111 521 246 62 22 chr12 118067587 118067766 -25718689 - L2 LINE L2 -411 2903 2718 228 191 222 0 chr12 118067767 118067830 -25718625 - L2 LINE L2 -704 2610 2534 1055 176 172 27 chr12 118067830 118068153 -25718302 + Tigger7 DNA MER2_type 1 2491 0 518 259 38 25 chr12 118068157 118068315 -25718140 - L2 LINE L2 -783 2531 2372 2164 81 47 3 chr12 118068352 118068648 -25717807 + AluSg SINE Alu 1 309 -1 2348 200 43 2 chr12 118068901 118069411 -25717044 + MER119 DNA MER1_type 3 533 -50 2036 130 10 23 chr12 118069435 118069736 -25716719 - AluSx SINE Alu -15 297 1 2107 131 0 25 chr12 118069749 118070063 -25716392 - AluSx SINE Alu -6 306 1 1928 83 8 0 chr12 118070346 118070586 -25715869 + AluJo SINE Alu 63 304 -8 869 109 8 23 chr12 118070833 118070961 -25715494 - FLAM_C SINE Alu -7 126 1 2084 132 30 0 chr12 118071300 118071603 -25714852 + AluSx SINE Alu 1 312 0 3029 150 30 79 chr12 118071689 118072215 -25714240 - MER21A LTR ERV1 -28 903 353 2076 107 7 0 chr12 118072215 118072486 -25713969 - AluSx SINE Alu -19 293 21 3029 150 30 79 chr12 118072486 118072900 -25713555 - MER21A LTR ERV1 -578 353 66 2414 102 0 0 chr12 118072900 118073203 -25713252 + AluSp SINE Alu 1 303 -10 3029 150 30 79 chr12 118073203 118073266 -25713189 - MER21A LTR ERV1 -865 66 1 2160 134 0 3 chr12 118073345 118073651 -25712804 - AluSx SINE Alu -7 305 1 374 239 15 31 chr12 118073723 118073853 -25712602 - MER94 DNA DNA 0 134 7 318 182 0 0 chr12 118073877 118073932 -25712523 + MSTA LTR MaLR 2 56 -372 * 740 71 0 102 chr12 118073929 118074056 -25712399 + MSTA LTR MaLR 313 426 -2 2233 118 3 16 chr12 118074057 118074194 -25712261 + AluSx SINE Alu 1 138 -174 2514 82 0 0 chr12 118074194 118074498 -25711957 + AluSc SINE Alu 1 304 -5 2233 118 3 16 chr12 118074498 118074666 -25711789 + AluSx SINE Alu 138 302 -10 1035 138 6 50 chr12 118074666 118074847 -25711608 + AluSg/x SINE Alu 134 306 -6 704 319 41 21 chr12 118074988 118075377 -25711078 - L1ME3A LINE L1 -219 5951 5555 727 218 62 32 chr12 118075379 118075813 -25710642 - MLT1D LTR MaLR 0 505 3 2258 97 20 13 chr12 118075891 118076191 -25710264 - AluSx SINE Alu -10 302 1 794 316 92 33 chr12 118076225 118076617 -25709838 - L2 LINE L2 -22 3250 2836 624 171 98 16 chr12 118076644 118076767 -25709688 + FLAM_C SINE Alu 1 133 0 1724 158 4 0 chr12 118076790 118077055 -25709400 + AluJb SINE Alu 42 307 -5 22 35 0 0 chr12 118077109 118077138 -25709317 + AT_rich Low_complexity Low_complexity 1 29 0 2183 122 3 0 chr12 118077283 118077578 -25708877 + AluSx SINE Alu 1 296 -16 984 84 0 0 chr12 118077693 118077839 -25708616 + AluSp/q SINE Alu 167 312 0 292 198 27 81 chr12 118077844 118077955 -25708500 - L1ME3 LINE L1 -15 6147 6043 294 29 0 0 chr12 118077967 118078002 -25708453 + (TC)n Simple_repeat Simple_repeat 2 36 0 248 0 31 0 chr12 118078001 118078033 -25708422 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 1825 160 14 0 chr12 118078033 118078314 -25708141 - AluSx SINE Alu -27 285 1 2159 124 0 0 chr12 118078681 118079006 -25707449 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 118079013 118079043 -25707412 + AT_rich Low_complexity Low_complexity 1 30 0 1624 147 90 29 chr12 118079043 118079345 -25707110 + AluJb SINE Alu 1 312 0 375 248 20 0 chr12 118079351 118079452 -25707003 - L1MC4a LINE L1 -1927 5881 5779 417 254 92 15 chr12 118079929 118080059 -25706396 - MIR SINE MIR -12 250 111 230 204 153 6 chr12 118080094 118080196 -25706259 - MIR SINE MIR -57 151 29 * 241 200 138 62 chr12 118080193 118080273 -25706182 + L2 LINE L2 3187 3272 0 1093 287 77 67 chr12 118080284 118080436 -25706019 - L2 LINE L2 -9 3304 3155 2034 125 10 0 chr12 118080436 118080732 -25705723 + AluSx SINE Alu 1 299 -13 1093 287 77 67 chr12 118080732 118081103 -25705352 - L2 LINE L2 -158 3155 2789 1054 181 0 0 chr12 118081103 118081269 -25705186 + FRAM SINE Alu 1 166 0 1093 287 77 67 chr12 118081269 118081877 -25704578 - L2 LINE L2 -524 2789 2161 2302 116 0 0 chr12 118081959 118082261 -25704194 + AluSx SINE Alu 3 304 -8 1059 164 6 23 chr12 118082769 118082946 -25703509 + AluJo SINE Alu 124 297 -15 1792 123 160 12 chr12 118082986 118083311 -25703144 - THE1C LTR MaLR -2 373 1 284 256 13 13 chr12 118083534 118083612 -25702843 + L2 LINE L2 3194 3271 -1 2024 163 0 0 chr12 118083660 118083960 -25702495 - AluSx SINE Alu -12 300 1 1301 173 40 33 chr12 118083960 118084154 -25702301 - MLT1E1 LTR MaLR -371 261 95 2505 69 0 10 chr12 118084154 118084457 -25701998 - AluY SINE Alu -11 300 1 1301 173 40 33 chr12 118084457 118084553 -25701902 - MLT1E1 LTR MaLR -537 95 1 1156 143 0 26 chr12 118084556 118084745 -25701710 + MLT1F LTR MaLR 62 245 -297 * 1256 247 158 48 chr12 118084739 118085098 -25701357 + Zaphod DNA AcHobo 61 379 -3652 1852 143 4 0 chr12 118085098 118085357 -25701098 + AluSx SINE Alu 1 260 -52 1256 247 158 48 chr12 118085357 118085440 -25701015 + Zaphod DNA AcHobo 379 452 -3579 2428 211 87 18 chr12 118085440 118085995 -25700460 + MLT1E LTR MaLR 1 593 0 1256 247 158 48 chr12 118085995 118086025 -25700430 + Zaphod DNA AcHobo 452 586 -3445 2168 146 0 0 chr12 118086028 118086337 -25700118 + AluSx SINE Alu 1 309 -3 271 256 16 83 chr12 118086346 118086467 -25699988 + MER115 DNA AcHobo 578 690 -3 558 239 0 74 chr12 118086640 118086803 -25699652 - MER45A DNA AcHobo -11 167 17 430 223 14 14 chr12 118086943 118087082 -25699373 - MER113 DNA MER1_type? -377 144 6 757 177 28 39 chr12 118087503 118087684 -25698771 + L1MB8 LINE L1 5999 6177 -1 360 266 55 16 chr12 118087835 118087963 -25698492 - MLT1H LTR MaLR -271 278 146 515 257 63 31 chr12 118088479 118088701 -25697754 - L2 LINE L2 -213 3059 2831 531 246 70 12 chr12 118088721 118088892 -25697563 + MLT2F LTR ERVL 6 186 -477 548 229 174 0 chr12 118088919 118089137 -25697318 + MLT2F LTR ERVL 406 661 -2 1060 290 79 12 chr12 118089219 118089623 -25696832 + MLT1J2 LTR MaLR 2 432 -18 800 240 16 47 chr12 118089626 118089674 -25696781 + MER113 DNA MER1_type? 64 112 -409 2678 52 0 0 chr12 118089674 118089979 -25696476 - AluY SINE Alu -6 305 1 2386 99 13 0 chr12 118089982 118090285 -25696170 - AluSx SINE Alu -5 307 1 800 240 16 47 chr12 118090285 118090549 -25695906 + MER113 DNA MER1_type? 114 370 -151 2190 129 10 0 chr12 118090677 118090986 -25695469 - AluSx SINE Alu 0 312 1 842 235 64 107 chr12 118090992 118091158 -25695297 - L1MC5 LINE L1 -48 7913 7741 2072 134 20 3 chr12 118091158 118091457 -25694998 - AluJo SINE Alu -8 304 1 842 235 64 107 chr12 118091457 118091505 -25694950 - L1MC5 LINE L1 -220 7741 7692 2466 88 0 0 chr12 118091505 118091802 -25694653 - AluSc SINE Alu -10 299 3 842 235 64 107 chr12 118091802 118091885 -25694570 - L1MC5 LINE L1 -269 7692 7607 2461 71 10 3 chr12 118091885 118092194 -25694261 + AluSp SINE Alu 1 311 -2 842 235 64 107 chr12 118092194 118092342 -25694113 - L1MC5 LINE L1 -354 7607 7454 1285 209 141 68 chr12 118092342 118092789 -25693666 + MLT1H LTR MaLR 1 414 -135 1818 158 7 0 chr12 118092789 118093106 -25693349 + AluJb SINE Alu 1 312 0 2369 89 10 0 chr12 118093108 118093411 -25693044 + AluSp SINE Alu 1 306 -7 1285 209 141 68 chr12 118093411 118093472 -25692983 + MLT1H LTR MaLR 414 549 0 842 235 64 107 chr12 118093472 118093649 -25692806 - L1MC5 LINE L1 -507 7454 7315 204 184 20 20 chr12 118093777 118093826 -25692629 - L2 LINE L2 -212 3060 3012 468 333 6 0 chr12 118094082 118094256 -25692199 + MER117 DNA MER1_type 15 189 -8 2146 133 0 0 chr12 118094374 118094668 -25691787 - AluSx SINE Alu -18 294 1 1163 299 10 18 chr12 118094698 118095082 -25691373 + LTR16A LTR ERVL 61 441 -9 471 191 111 0 chr12 118095088 118095214 -25691241 + MER112 DNA MER1_type 73 212 -48 805 255 75 85 chr12 118095278 118095702 -25690753 - MLT1L LTR MaLR -2 613 194 2370 111 3 0 chr12 118095759 118096065 -25690390 + AluSx SINE Alu 1 307 -5 438 36 0 0 chr12 118096098 118096154 -25690301 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 247 235 25 chr12 118096855 118096936 -25689519 + MER5A DNA MER1_type 50 147 -42 650 204 189 49 chr12 118096948 118097233 -25689222 - L1MC4 LINE L1 -9 8033 7709 2177 129 0 7 chr12 118097294 118097596 -25688859 - AluSx SINE Alu -12 300 1 316 139 0 42 chr12 118097664 118097736 -25688719 + (TTCTCC)n Simple_repeat Simple_repeat 4 72 0 353 207 110 0 chr12 118097736 118097818 -25688637 - FLAM SINE Alu -1 132 42 314 206 0 0 chr12 118097821 118097889 -25688566 - L1MC4 LINE L1 -468 7574 7507 1318 121 11 0 chr12 118098346 118098536 -25687919 + AluSg/x SINE Alu 120 311 -1 440 273 0 0 chr12 118098659 118098758 -25687697 - MIR SINE MIR -105 157 59 1039 169 0 0 chr12 118098758 118098918 -25687537 - AluJo/FRAM SINE Alu -16 296 137 1467 192 80 0 chr12 118098918 118099194 -25687261 - AluJo SINE Alu -14 298 1 199 264 0 69 chr12 118099196 118099268 -25687187 - MIR3 SINE MIR -140 68 2 411 189 27 0 chr12 118099439 118099513 -25686942 + MIR SINE MIR 22 97 -165 451 293 85 39 chr12 118099584 118099843 -25686612 + LTR33 LTR ERVL 108 378 -143 1983 111 14 11 chr12 118099844 118100149 -25686306 - AluSx SINE Alu 0 306 1 715 227 55 0 chr12 118100158 118100321 -25686134 - MIR SINE MIR -11 251 80 813 257 29 5 chr12 118100534 118100744 -25685711 + MIR SINE MIR 47 261 -1 562 242 37 106 chr12 118101124 118101397 -25685058 - L2 LINE L2 -20 3293 3040 851 92 0 0 chr12 118101472 118101592 -25684863 + MER51A LTR ERV1 1 120 -514 655 227 49 34 chr12 118101737 118101970 -25684485 + MIR SINE MIR 8 252 -10 28 0 0 0 chr12 118102067 118102095 -25684360 + AT_rich Low_complexity Low_complexity 1 28 0 2247 55 0 61 chr12 118102147 118102458 -25683997 - AluY SINE Alu -19 292 1 1157 60 0 0 chr12 118102458 118102592 -25683863 - AluY SINE Alu -177 134 1 543 167 0 0 chr12 118102631 118102727 -25683728 + MIR SINE MIR 121 216 -46 2235 133 0 3 chr12 118102785 118103093 -25683362 - AluSx SINE Alu -5 307 1 1683 174 7 7 chr12 118103095 118103382 -25683073 - AluJo SINE Alu -15 297 11 4247 76 9 4 chr12 118103535 118104086 -25682369 - MER41A LTR ERV1 0 554 1 408 245 70 28 chr12 118104689 118104832 -25681623 - MIR SINE MIR -2 260 112 473 230 111 7 chr12 118104834 118104969 -25681486 + MLT1J LTR MaLR 1 149 -362 568 213 6 22 chr12 118105217 118105400 -25681055 + CT-rich Low_complexity Low_complexity 1 180 0 670 195 20 28 chr12 118105422 118105749 -25680706 + CT-rich Low_complexity Low_complexity 1 324 0 861 159 0 0 chr12 118105751 118105927 -25680528 - FLAM_C SINE Alu 0 176 1 2129 102 38 0 chr12 118106151 118106444 -25680011 - AluSx SINE Alu -8 304 1 358 162 0 0 chr12 118106445 118106513 -25679942 + L1MB8 LINE L1 6111 6178 0 322 305 126 13 chr12 118106690 118106841 -25679614 - MIR SINE MIR -18 244 77 397 280 103 46 chr12 118107314 118107532 -25678923 - MIR SINE MIR -1 261 35 313 266 142 35 chr12 118107573 118107802 -25678653 + L2 LINE L2 2778 3036 -277 2145 142 0 0 chr12 118107838 118108140 -25678315 + AluSx SINE Alu 1 302 -10 290 263 11 42 chr12 118108167 118108262 -25678193 - L2 LINE L2 -60 3253 3162 250 261 0 87 chr12 118108437 118108529 -25677926 + L2 LINE L2 3140 3223 -49 537 189 0 168 chr12 118108552 118108737 -25677718 - MIR SINE MIR 0 262 109 1782 121 4 0 chr12 118108737 118108969 -25677486 - AluSq SINE Alu -80 233 1 1019 135 4 15 chr12 118109030 118109469 -25676986 + (GGAA)n Simple_repeat Simple_repeat 3 256 0 212 349 0 0 chr12 118110010 118110073 -25676382 - MIR SINE MIR -16 246 184 294 258 0 79 chr12 118110114 118110203 -25676252 + MIR3 SINE MIR 78 159 -49 214 245 0 0 chr12 118110177 118110230 -25676225 - MIR SINE MIR -147 115 63 * 288 195 289 8 chr12 118110346 118110474 -25675981 + MER117 DNA MER1_type 34 197 0 2374 125 0 0 chr12 118110710 118111022 -25675433 - AluSx SINE Alu 0 312 1 2052 138 0 10 chr12 118111024 118111322 -25675133 - AluJo SINE Alu -16 296 2 471 262 15 11 chr12 118111327 118111474 -25674981 + MIR SINE MIR 42 190 -18 344 264 99 8 chr12 118111624 118111745 -25674710 - MIR SINE MIR -129 133 2 21 36 0 0 chr12 118112064 118112092 -25674363 + AT_rich Low_complexity Low_complexity 1 28 0 2297 98 0 3 chr12 118112092 118112377 -25674078 - AluSx SINE Alu -22 290 7 240 200 67 44 chr12 118112730 118112820 -25673635 - MLT1K LTR MaLR -460 128 37 359 293 92 4 chr12 118112835 118113039 -25673416 - L1 LINE L1 -2843 3303 3073 2277 106 10 10 chr12 118113052 118113217 -25673238 - AluSx SINE Alu -11 301 134 2297 93 3 7 chr12 118113217 118113527 -25672928 - AluSx SINE Alu 0 312 1 2277 106 10 10 chr12 118113527 118113662 -25672793 - AluSx SINE Alu -177 135 1 815 241 9 47 chr12 118114387 118114519 -25671936 + MIR SINE MIR 33 156 -106 2061 121 6 62 chr12 118114519 118114842 -25671613 + AluSx SINE Alu 1 305 -7 815 241 9 47 chr12 118114842 118114921 -25671534 + MIR SINE MIR 156 236 -26 1736 155 10 27 chr12 118114933 118115229 -25671226 + AluJo SINE Alu 2 292 -20 256 175 0 88 chr12 118115285 118115342 -25671113 - Charlie8 DNA MER1_type -2252 165 114 443 224 65 130 chr12 118115345 118115488 -25670967 - MIR SINE MIR -25 237 86 2135 100 7 0 chr12 118115488 118115759 -25670696 + AluSq SINE Alu 1 273 -40 443 224 65 130 chr12 118115759 118115808 -25670647 - MIR SINE MIR -176 86 62 497 204 18 9 chr12 118115808 118115921 -25670534 - MER81 DNA DNA 0 114 1 443 224 65 130 chr12 118115921 118115973 -25670482 - MIR SINE MIR -200 62 8 666 206 7 0 chr12 118116096 118116237 -25670218 + MIR SINE MIR 114 255 -7 282 29 0 0 chr12 118116246 118116281 -25670174 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2221 140 13 0 chr12 118116287 118116595 -25669860 - AluSx SINE Alu 0 312 1 1389 179 56 77 chr12 118116656 118116980 -25669475 + MER77 LTR ERV1 276 592 -13 500 151 143 10 chr12 118117223 118117355 -25669100 - MIR SINE MIR -61 147 22 2431 88 3 19 chr12 118117771 118118089 -25668366 - AluSq SINE Alu 0 313 1 662 212 7 53 chr12 118118186 118118255 -25668200 + MIR SINE MIR 119 190 -72 2238 127 7 0 chr12 118118255 118118555 -25667900 + AluSx SINE Alu 1 302 -10 662 212 7 53 chr12 118118555 118118636 -25667819 + MIR SINE MIR 190 262 0 2383 85 3 23 chr12 118118855 118119162 -25667293 + AluSx SINE Alu 1 301 -11 483 213 191 38 chr12 118119169 118119352 -25667103 - MLT1J LTR MaLR -74 437 227 862 266 96 4 chr12 118119411 118119682 -25666773 - LTR16A1 LTR ERVL -2 455 160 312 212 70 123 chr12 118119863 118119931 -25666524 - MLT1J LTR MaLR -320 158 109 2347 122 0 0 chr12 118119931 118120243 -25666212 - AluSx SINE Alu 0 312 1 312 212 70 123 chr12 118120243 118120330 -25666125 - MLT1J LTR MaLR -369 109 19 899 118 39 0 chr12 118120664 118120791 -25665664 + AluJb SINE Alu 179 310 -2 2272 110 10 0 chr12 118120796 118121104 -25665351 + AluSx SINE Alu 1 311 -1 717 291 102 55 chr12 118121268 118121756 -25664699 - LTR33 LTR ERVL 0 521 11 792 126 0 31 chr12 118121839 118121966 -25664489 - FLAM_C SINE Alu -10 123 1 2380 86 0 0 chr12 118122057 118122348 -25664107 + AluY SINE Alu 6 296 -15 881 240 52 35 chr12 118122374 118122661 -25663794 - L1ME3A LINE L1 -5 6165 5874 2141 124 6 13 chr12 118122850 118123030 -25663425 - AluSq SINE Alu 0 313 134 1592 95 183 4 chr12 118123030 118123292 -25663163 - AluSg1 SINE Alu 0 309 1 2141 124 6 13 chr12 118123292 118123426 -25663029 - AluSq SINE Alu -179 134 1 1596 180 53 7 chr12 118123507 118123791 -25662664 + AluJb SINE Alu 1 297 -15 2315 103 0 13 chr12 118123791 118124103 -25662352 + AluSq SINE Alu 1 308 -5 287 301 0 49 chr12 118124516 118124529 -25661926 - L1ME3A LINE L1 -437 5684 5672 2136 131 0 3 chr12 118124529 118124826 -25661629 + AluSx SINE Alu 1 296 -16 287 301 0 49 chr12 118124826 118124935 -25661520 - L1ME3A LINE L1 -449 5672 5568 2228 142 0 0 chr12 118125008 118125319 -25661136 - AluSx SINE Alu -1 311 1 263 314 0 0 chr12 118125410 118125480 -25660975 - MIR SINE MIR -81 127 58 4033 89 4 0 chr12 118125516 118126068 -25660387 - MER41A LTR ERV1 0 554 1 528 86 0 0 chr12 118126368 118126438 -25660017 + AluSc SINE Alu 183 252 -57 2096 147 0 7 chr12 118126714 118127020 -25659435 - AluSx SINE Alu -8 304 1 347 248 55 18 chr12 118127153 118127262 -25659193 - LTR67 LTR ERVL 0 557 445 2226 138 0 0 chr12 118128226 118128530 -25657925 - AluJo SINE Alu -7 305 2 413 284 66 56 chr12 118128943 118129343 -25657112 - MLT1L LTR MaLR -10 605 168 313 256 171 23 chr12 118130083 118130212 -25656243 + MIR SINE MIR 14 161 -101 379 253 164 7 chr12 118130223 118130369 -25656086 + MER46C DNA MER2_type 77 245 -93 1635 114 12 135 chr12 118130473 118130814 -25655641 - AluSx SINE Alu -3 299 1 188 83 0 28 chr12 118131246 118131282 -25655173 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 118131826 118131847 -25654608 + GC_rich Low_complexity Low_complexity 1 21 0 1753 125 44 27 chr12 118131994 118132290 -25654165 + AluJb SINE Alu 1 301 -11 205 102 34 34 chr12 118132329 118132388 -25654067 + A-rich Low_complexity Low_complexity 2 60 0 413 213 71 55 chr12 118133363 118133520 -25652935 - MIR SINE MIR -21 241 72 991 276 111 37 chr12 118133906 118134203 -25652252 - MLT1L LTR MaLR -2 613 269 2386 114 0 0 chr12 118134203 118134511 -25651944 - AluSx SINE Alu -4 308 1 991 276 111 37 chr12 118134511 118134673 -25651782 - MLT1L LTR MaLR -346 269 120 577 254 98 45 chr12 118134738 118135046 -25651409 - MLT1J2 LTR MaLR -16 434 72 2323 85 4 0 chr12 118135172 118135478 -25650977 + AluSq SINE Alu 1 307 0 278 299 0 73 chr12 118135589 118135726 -25650729 + L2 LINE L2 2925 3051 -221 846 266 86 90 chr12 118135850 118136394 -25650061 - MLT1K LTR MaLR -10 578 37 424 282 206 0 chr12 118136472 118136642 -25649813 - MIR SINE MIR -5 257 53 2211 104 3 20 chr12 118136975 118137273 -25649182 - AluSx SINE Alu -19 293 1 474 249 139 12 chr12 118137702 118137875 -25648580 - MIR SINE MIR -20 242 48 183 80 0 0 chr12 118138959 118138984 -25647471 + (T)n Simple_repeat Simple_repeat 1 25 0 2339 115 0 6 chr12 118138995 118139307 -25647148 - AluSq SINE Alu -3 310 1 2014 131 30 3 chr12 118139506 118139803 -25646652 - AluSx SINE Alu -7 305 1 489 179 4 213 chr12 118139844 118140084 -25646371 - MER91B DNA MER1_type 0 190 1 2373 107 3 0 chr12 118140283 118140593 -25645862 - AluSq SINE Alu -2 311 1 2319 112 3 0 chr12 118140789 118141094 -25645361 - AluSq SINE Alu -3 310 5 655 177 69 34 chr12 118141241 118141416 -25645039 - MER3 DNA MER1_type -20 189 9 357 232 84 11 chr12 118141418 118141513 -25644942 + MER58A DNA MER1_type 3 104 -3 1234 158 169 15 chr12 118141557 118141817 -25644638 - AluSg SINE Alu 0 300 1 2292 104 0 3 chr12 118141829 118142137 -25644318 - AluSg1 SINE Alu -2 307 1 386 247 10 21 chr12 118142216 118142313 -25644142 - MER5A DNA MER1_type -80 109 14 2217 109 3 0 chr12 118142537 118142896 -25643559 + AluSx SINE Alu 1 360 0 812 269 37 34 chr12 118143756 118144024 -25642431 - MLT1I LTR MaLR -2 407 139 2223 112 10 0 chr12 118144024 118144318 -25642137 - AluSx SINE Alu -15 297 1 324 299 10 10 chr12 118144425 118144522 -25641933 - MLT1I LTR MaLR -303 106 10 300 239 211 0 chr12 118144583 118144692 -25641763 + L2 LINE L2 2921 3052 -220 422 227 99 14 chr12 118144718 118144859 -25641596 - LTR33 LTR ERVL 0 521 369 345 286 49 76 chr12 118145046 118145231 -25641224 + L2 LINE L2 3122 3301 -12 2269 118 39 32 chr12 118145253 118145284 -25641171 - MSTA LTR MaLR -19 409 380 2071 129 3 19 chr12 118145284 118145601 -25640854 - AluSx SINE Alu 0 312 1 2269 118 39 32 chr12 118145601 118145975 -25640480 - MSTA LTR MaLR -48 380 1 710 321 75 30 chr12 118146000 118146292 -25640163 + L2 LINE L2 2717 2994 -278 1962 103 45 41 chr12 118146292 118146583 -25639872 - AluSx SINE Alu -20 292 1 710 321 75 30 chr12 118146583 118146829 -25639626 + L2 LINE L2 2994 3272 0 2321 123 7 0 chr12 118147458 118147768 -25638687 - AluSx SINE Alu 0 312 1 216 0 0 0 chr12 118147976 118148000 -25638455 + (TG)n Simple_repeat Simple_repeat 2 25 0 2337 120 0 0 chr12 118148254 118148553 -25637902 - AluSx SINE Alu -13 299 1 378 261 62 23 chr12 118148724 118148854 -25637601 - MLT1L LTR MaLR -332 283 149 341 222 111 0 chr12 118148860 118148950 -25637505 + MER58 DNA MER1_type 1 100 -2320 343 169 31 0 chr12 118148969 118149034 -25637421 + MER58 DNA MER1_type 2353 2419 -1 712 98 27 0 chr12 118149042 118149154 -25637301 + FLAM_A SINE Alu 20 134 -8 1952 106 75 20 chr12 118149154 118149446 -25637009 + AluSx SINE Alu 1 308 -4 297 151 0 0 chr12 118150177 118150230 -25636225 + A-rich Low_complexity Low_complexity 1 53 0 235 317 69 0 chr12 118150230 118150331 -25636124 + Charlie8 DNA MER1_type 106 213 -2204 254 293 122 49 chr12 118150459 118150623 -25635832 + MLT1L LTR MaLR 220 395 -220 2025 141 0 0 chr12 118150686 118150970 -25635485 - AluSx SINE Alu -8 304 21 6860 49 2 30 chr12 118151024 118151886 -25634569 - SVA Other Other 0 1386 549 21 57 0 0 chr12 118151912 118151947 -25634508 + GC_rich Low_complexity Low_complexity 1 35 0 5629 73 27 54 chr12 118151952 118153423 -25633032 - SVA Other Other -518 868 57 695 53 21 0 chr12 118153423 118153518 -25632937 + (GGGAGA)n Simple_repeat Simple_repeat 1 97 0 358 160 53 0 chr12 118154528 118154603 -25631852 - MLT1L LTR MaLR 0 615 537 1166 177 17 58 chr12 118154612 118154802 -25631653 - L1MD3 LINE L1 -1 7994 7819 2204 116 3 0 chr12 118154802 118155094 -25631361 - AluSq SINE Alu -20 293 1 1166 177 17 58 chr12 118155094 118155197 -25631258 - L1MD3 LINE L1 -176 7819 7713 261 329 0 0 chr12 118155679 118155758 -25630697 + L2 LINE L2 1868 1946 -1368 2533 76 0 0 chr12 118155849 118156153 -25630302 - AluY SINE Alu -7 304 1 413 132 0 13 chr12 118156197 118156273 -25630182 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 404 146 0 73 chr12 118156273 118156355 -25630100 - AluSc SINE Alu -3 296 221 696 297 48 4 chr12 118156364 118156633 -25629822 - L1ME3 LINE L1 -20 6142 5862 1596 264 52 76 chr12 118156634 118156837 -25629618 - MER20B DNA MER1_type -24 759 553 1182 196 9 0 chr12 118156837 118157056 -25629399 - MER58A DNA MER1_type -3 221 1 1596 264 52 76 chr12 118157056 118157338 -25629117 - MER20B DNA MER1_type -230 553 266 1730 151 15 7 chr12 118157338 118157609 -25628846 - AluJb SINE Alu -9 303 31 1596 264 52 76 chr12 118157609 118157664 -25628791 - MER20B DNA MER1_type -517 266 211 2118 135 0 22 chr12 118157664 118157983 -25628472 + AluSx SINE Alu 1 312 0 1596 264 52 76 chr12 118157983 118158215 -25628240 - MER20B DNA MER1_type -572 211 4 537 247 82 85 chr12 118159169 118159653 -25626802 - MLT1K LTR MaLR -46 542 11 301 322 24 38 chr12 118159886 118160020 -25626435 + MER5A DNA MER1_type 1 148 -41 181 283 189 0 chr12 118160060 118160113 -25626342 + L2 LINE L2 3210 3272 0 605 86 0 0 chr12 118160159 118160240 -25626215 - AluJ/FRAM SINE Alu -16 296 216 580 216 46 26 chr12 118160260 118160454 -25626001 - L1M4 LINE L1 -2680 3466 3269 2171 121 0 45 chr12 118160522 118160836 -25625619 + AluSx SINE Alu 1 300 -12 617 268 67 0 chr12 118161135 118161299 -25625156 + MER96 DNA MER1_type 1 175 0 36 23 0 0 chr12 118161423 118161466 -25624989 + AT_rich Low_complexity Low_complexity 1 43 0 1642 151 84 35 chr12 118161466 118161750 -25624705 + AluJb SINE Alu 3 300 -12 888 234 15 72 chr12 118161754 118161926 -25624529 - L1MA9 LINE L1 -38 6274 6129 2310 102 0 16 chr12 118161926 118162230 -25624225 - AluSx SINE Alu -13 299 1 888 234 15 72 chr12 118162230 118162391 -25624064 - L1MA9 LINE L1 -183 6129 5960 276 248 0 68 chr12 118162931 118163048 -25623407 + CT-rich Low_complexity Low_complexity 4 112 0 211 211 0 0 chr12 118163187 118163225 -25623230 + (CAT)n Simple_repeat Simple_repeat 2 39 0 376 299 10 0 chr12 118163293 118163390 -25623065 - MIR SINE MIR -65 143 46 419 356 0 31 chr12 118163726 118163917 -25622538 - MIR SINE MIR -71 191 7 223 401 0 12 chr12 118164535 118164702 -25621753 + (CA)n Simple_repeat Simple_repeat 1 165 0 408 228 16 73 chr12 118165316 118165439 -25621016 + MIR SINE MIR 29 144 -118 319 169 34 0 chr12 118165588 118165647 -25620808 + MIR SINE MIR 51 111 -151 402 173 25 0 chr12 118165647 118165728 -25620727 - AluJ/FLAM SINE Alu -228 84 2 222 261 250 0 chr12 118165730 118165822 -25620633 + MIR SINE MIR 100 214 -48 898 159 90 50 chr12 118165963 118166039 -25620416 - MIR SINE MIR -26 236 164 1869 162 10 7 chr12 118166039 118166336 -25620119 - AluJo SINE Alu -14 298 1 898 159 90 50 chr12 118166336 118166460 -25619995 - MIR SINE MIR -98 164 28 320 258 129 1 chr12 118167012 118167102 -25619353 + MIR SINE MIR 41 147 -97 2281 116 3 3 chr12 118167102 118167405 -25619050 + AluSx SINE Alu 5 307 -5 320 258 129 1 chr12 118167405 118167425 -25619030 + MIR SINE MIR 147 163 -81 520 319 29 18 chr12 118167425 118167701 -25618754 + MLT1H LTR MaLR 1 279 -270 1992 144 20 0 chr12 118168587 118168885 -25617570 - AluJo SINE Alu -8 304 1 1500 271 24 47 chr12 118168886 118169333 -25617122 + L1ME3A LINE L1 5304 5731 -439 1790 177 3 20 chr12 118169333 118169638 -25616817 + AluJb SINE Alu 1 300 -12 1500 271 24 47 chr12 118169638 118169853 -25616602 + L1ME3A LINE L1 5731 5949 -221 2139 113 7 16 chr12 118169907 118170247 -25616208 + AluSq SINE Alu 1 313 0 2058 103 0 24 chr12 118170249 118170571 -25615884 + AluSc SINE Alu 1 315 0 214 190 121 0 chr12 118170836 118170894 -25615561 + MIR SINE MIR 66 130 -78 783 181 0 0 chr12 118171013 118171168 -25615287 + CT-rich Low_complexity Low_complexity 4 158 0 1642 179 26 0 chr12 118171174 118171447 -25615008 - AluJo SINE Alu -32 280 1 2334 111 0 16 chr12 118172011 118172326 -25614129 + AluSx SINE Alu 3 312 0 230 278 10 0 chr12 118172333 118172430 -25614025 + GA-rich Low_complexity Low_complexity 3 100 0 586 197 16 8 chr12 118172549 118172676 -25613779 - MLT1I LTR MaLR -39 370 243 2204 147 0 0 chr12 118173180 118173486 -25612969 - AluSx SINE Alu -6 306 1 1109 233 80 21 chr12 118173591 118173965 -25612490 - MER113 DNA MER1_type? -111 410 15 488 244 67 8 chr12 118173987 118174106 -25612349 + MIR SINE MIR 29 154 -108 925 224 96 29 chr12 118174120 118174297 -25612158 - MER46C DNA MER2_type -4 334 170 216 0 0 0 chr12 118174297 118174321 -25612134 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 925 224 96 29 chr12 118174321 118174455 -25612000 - MER46C DNA MER2_type -168 170 2 2133 136 0 7 chr12 118174699 118175069 -25611386 - AluSg SINE Alu 0 370 3 1233 249 94 5 chr12 118175146 118175196 -25611259 - LTR16C LTR ERVL -8 483 439 1557 168 10 125 chr12 118175196 118175589 -25610866 - MER7A DNA MER2_type 0 346 1 1233 249 94 5 chr12 118175589 118175919 -25610536 - LTR16C LTR ERVL -52 439 69 601 267 111 48 chr12 118175985 118176475 -25609980 + MLT1L LTR MaLR 25 599 -16 904 257 122 36 chr12 118177212 118177574 -25608881 + MLT1K LTR MaLR 86 478 -110 438 165 0 0 chr12 118177582 118177661 -25608794 + CT-rich Low_complexity Low_complexity 1 79 0 295 176 15 0 chr12 118177661 118177729 -25608726 - L1MB3 LINE L1 -1 6182 6114 460 101 34 45 chr12 118177827 118177916 -25608539 + THE1B LTR MaLR 194 281 -83 439 210 89 0 chr12 118178422 118178546 -25607909 - L1MB4 LINE L1 -52 6128 5994 27 0 0 0 chr12 118178551 118178578 -25607877 + AT_rich Low_complexity Low_complexity 1 27 0 2188 128 3 3 chr12 118178578 118178882 -25607573 - AluSx SINE Alu -8 304 1 1552 191 60 40 chr12 118178885 118179305 -25607150 - L1ME1 LINE L1 0 6166 5739 311 145 29 29 chr12 118179337 118179406 -25607049 + MLT1K LTR MaLR 513 581 -7 665 279 140 41 chr12 118179485 118179820 -25606635 - MLT1L LTR MaLR -17 598 217 2306 119 19 32 chr12 118179820 118180189 -25606266 + THE1B LTR MaLR 1 364 0 665 279 140 41 chr12 118180189 118180247 -25606208 - MLT1L LTR MaLR -398 217 166 1032 236 53 42 chr12 118180568 118180924 -25605531 - MLT1K LTR MaLR -29 559 200 340 219 105 29 chr12 118181085 118181190 -25605265 - MIR SINE MIR -61 147 35 1681 182 46 54 chr12 118181357 118181730 -25604725 + MLT1A2 LTR MaLR 1 370 -4 208 231 0 0 chr12 118181749 118181788 -25604667 - L2 LINE L2 -11 3261 3223 2371 102 0 0 chr12 118181872 118182167 -25604288 + AluSx SINE Alu 1 295 -17 591 249 73 12 chr12 118182404 118182569 -25603886 - MIR SINE MIR -40 222 48 216 0 0 0 chr12 118182582 118182606 -25603849 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2398 102 0 13 chr12 118182609 118182923 -25603532 - AluSx SINE Alu -2 310 1 392 268 9 27 chr12 118183189 118183301 -25603154 - MIR SINE MIR -43 219 110 821 265 84 14 chr12 118183901 118184188 -25602267 - MLT1L LTR MaLR 0 615 309 1895 180 0 6 chr12 118184215 118184526 -25601929 - AluJb SINE Alu -3 309 1 484 178 8 68 chr12 118184601 118184719 -25601736 + MIR SINE MIR 102 212 -50 880 205 94 12 chr12 118184736 118184980 -25601475 + LTR33 LTR ERVL 8 271 -250 1226 154 0 24 chr12 118185093 118185301 -25601154 + AluJo SINE Alu 85 287 -25 2422 179 69 81 chr12 118186422 118186759 -25599696 + LTR8A LTR ERV1 1 341 -386 2593 60 3 0 chr12 118186759 118187057 -25599398 + AluSp SINE Alu 1 299 -14 2422 179 69 81 chr12 118187057 118187447 -25599008 + LTR8A LTR ERV1 341 719 -8 314 273 40 10 chr12 118187542 118187641 -25598814 + MIR SINE MIR 29 130 -132 316 173 267 0 chr12 118187720 118187795 -25598660 - MIR SINE MIR -156 106 12 485 256 29 17 chr12 118187817 118187978 -25598477 + MIR SINE MIR 9 171 -67 187 279 0 0 chr12 118187977 118188020 -25598435 + L2 LINE L2 3252 3294 -19 * 428 204 28 9 chr12 118188041 118188149 -25598306 + MER103 DNA DNA 38 147 -19 1766 180 9 25 chr12 118188194 118188309 -25598146 + AluJo SINE Alu 1 116 -196 267 31 0 0 chr12 118188309 118188341 -25598114 + (CAA)n Simple_repeat Simple_repeat 1 32 0 1766 180 9 25 chr12 118188341 118188542 -25597913 + AluJo SINE Alu 116 312 0 1675 144 119 4 chr12 118188669 118188947 -25597508 + AluJo SINE Alu 1 310 -2 2372 204 67 45 chr12 118188952 118189682 -25596773 - L1MC4 LINE L1 -29 8013 7268 379 287 56 21 chr12 118190788 118190931 -25595524 + MIR SINE MIR 102 249 -13 3151 214 15 49 chr12 118190938 118191157 -25595298 - LTR8 LTR ERV1 0 691 466 180 0 0 0 chr12 118191157 118191177 -25595278 + (TTGGGG)n Simple_repeat Simple_repeat 1 20 0 3151 214 15 49 chr12 118191177 118191671 -25594784 - LTR8 LTR ERV1 -225 466 2 264 319 11 0 chr12 118192068 118192162 -25594293 - MIR SINE MIR -8 254 160 1259 131 14 23 chr12 118192166 118192387 -25594068 - THE1C LTR MaLR -156 219 1 198 143 0 0 chr12 118192396 118192431 -25594024 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 871 287 4 17 chr12 118192433 118192670 -25593785 - MIR SINE MIR -12 250 17 346 246 33 25 chr12 118192664 118192786 -25593669 + MIR SINE MIR 103 225 -37 * 1309 189 5 0 chr12 118192811 118193028 -25593427 - AluSg/x SINE Alu -10 302 85 303 350 19 10 chr12 118193094 118193197 -25593258 + L2 LINE L2 2971 3074 -198 2175 139 0 0 chr12 118193509 118193812 -25592643 - AluSx SINE Alu -9 303 1 373 198 121 60 chr12 118194212 118194246 -25592209 + L2 LINE L2 3144 3175 -97 1505 192 47 89 chr12 118194246 118194577 -25591878 + MLT1B LTR MaLR 2 317 -73 1834 163 0 7 chr12 118194577 118194887 -25591568 - AluJb SINE Alu 0 308 1 1505 192 47 89 chr12 118194887 118194959 -25591496 + MLT1B LTR MaLR 317 390 0 373 198 121 60 chr12 118194959 118195040 -25591415 + L2 LINE L2 3175 3266 -6 624 281 171 0 chr12 118195041 118195258 -25591197 + MIR SINE MIR 9 262 0 564 273 35 49 chr12 118195279 118195639 -25590816 - MLT1K LTR MaLR -145 443 143 624 256 116 5 chr12 118195671 118195878 -25590577 - MLT1K LTR MaLR -341 247 18 2270 116 0 7 chr12 118197425 118197728 -25588727 - AluSq SINE Alu -8 305 5 263 189 75 0 chr12 118197750 118197803 -25588652 - MSTA LTR MaLR -2 426 370 1830 121 132 51 chr12 118198304 118198675 -25587780 - MSTA LTR MaLR -27 401 1 1346 228 49 6 chr12 118198715 118199039 -25587416 + MER46C DNA MER2_type 1 338 0 860 281 58 78 chr12 118199095 118199243 -25587212 + L1ME4a LINE L1 5317 5466 -655 2523 79 0 0 chr12 118199243 118199548 -25586907 + AluY SINE Alu 1 305 -6 860 281 58 78 chr12 118199548 118199671 -25586784 + L1ME4a LINE L1 5466 5590 -531 719 176 0 8 chr12 118199671 118199796 -25586659 - FLAM_A SINE Alu -9 124 1 860 281 58 78 chr12 118199796 118200214 -25586241 + L1ME4a LINE L1 5590 5993 -128 320 303 27 109 chr12 118200348 118200569 -25585886 - L1ME4a LINE L1 -71 6050 5848 267 274 0 0 chr12 118201040 118201102 -25585353 + MIR SINE MIR 89 150 -112 1166 187 4 25 chr12 118201373 118201608 -25584847 + L1MB5 LINE L1 5937 6166 -8 589 202 14 138 chr12 118201686 118201904 -25584551 + MIR SINE MIR 72 262 0 460 247 27 7 chr12 118202739 118202889 -25583566 + MER103 DNA DNA 3 155 -11 246 277 139 58 chr12 118203039 118203176 -25583279 - L2 LINE L2 -10 3262 3115 651 291 64 9 chr12 118203182 118203402 -25583053 - MIR SINE MIR 0 262 31 306 363 10 10 chr12 118203719 118203821 -25582634 + MIR SINE MIR 16 117 -91 243 344 62 16 chr12 118203878 118204006 -25582449 + L2 LINE L2 3180 3313 0 2064 147 0 10 chr12 118204500 118204813 -25581642 + AluJo SINE Alu 1 310 -2 1781 154 11 4 chr12 118205127 118205436 -25581019 + AluJb SINE Alu 1 311 0 2116 135 10 0 chr12 118206097 118206394 -25580061 + AluSx SINE Alu 2 301 -11 438 250 38 100 chr12 118206503 118206891 -25579564 - MLT1H1 LTR MaLR -67 500 104 454 323 27 18 chr12 118207107 118207330 -25579125 + HAL1b LINE L1 453 677 -671 2146 106 0 56 chr12 118207516 118207836 -25578619 - AluSx SINE Alu -10 302 1 2190 137 0 0 chr12 118208053 118208352 -25578103 - AluSx SINE Alu -13 299 1 297 330 9 9 chr12 118208589 118208704 -25577751 + CT-rich Low_complexity Low_complexity 1 115 0 204 328 0 0 chr12 118208704 118208768 -25577687 - L2 LINE L2 -2 3270 3207 2222 122 0 0 chr12 118209459 118209755 -25576700 - AluSx SINE Alu -16 296 1 641 228 141 43 chr12 118209840 118210002 -25576453 + L1ME3 LINE L1 5860 6005 -157 1950 144 0 29 chr12 118210002 118210308 -25576147 - AluJb SINE Alu -15 297 1 641 228 141 43 chr12 118210308 118210421 -25576034 + L1ME3 LINE L1 6005 6162 0 438 315 107 14 chr12 118210800 118211016 -25575439 - L2 LINE L2 -493 2821 2586 2090 142 10 0 chr12 118211107 118211416 -25575039 + AluSx SINE Alu 1 312 0 410 265 55 130 chr12 118211427 118211680 -25574775 + MIR SINE MIR 17 250 -12 876 251 98 4 chr12 118211799 118212034 -25574421 + MLT1I LTR MaLR 153 409 0 609 336 65 0 chr12 118212512 118212774 -25573681 + L2 LINE L2 2696 2974 -340 1962 110 17 3 chr12 118212938 118213230 -25573225 + Tigger2a DNA MER2_type 1 296 -138 1331 206 26 29 chr12 118213236 118213546 -25572909 - L1MB5 LINE L1 -138 6036 5728 425 93 227 13 chr12 118213546 118213621 -25572834 + Tigger2 DNA MER2_type 2330 2420 -298 326 127 0 18 chr12 118213651 118213718 -25572737 + L1MB4 LINE L1 6027 6092 -88 292 176 0 0 chr12 118213823 118213874 -25572581 + L1MB4 LINE L1 6095 6145 -35 * 433 183 19 19 chr12 118213840 118213957 -25572498 - L1MB5 LINE L1 -498 5682 5601 742 306 70 0 chr12 118213990 118214219 -25572236 - MIR SINE MIR -3 259 15 1977 135 0 0 chr12 118214379 118214682 -25571773 - AluSx SINE Alu -9 303 1 326 271 57 115 chr12 118214761 118214925 -25571530 - L1ME4a LINE L1 -8 6113 5941 1554 163 50 0 chr12 118214925 118215202 -25571253 - AluJo SINE Alu -21 291 1 326 271 57 115 chr12 118215202 118215595 -25570860 - L1ME4a LINE L1 -180 5941 5588 1537 237 91 52 chr12 118216044 118216584 -25569871 - MLT1K LTR MaLR -5 583 23 906 208 57 10 chr12 118216736 118216928 -25569527 + MER3 DNA MER1_type 9 209 0 387 255 11 0 chr12 118217898 118217992 -25568463 + MLT1H1 LTR MaLR 10 104 -486 * 1518 203 44 7 chr12 118217990 118218286 -25568169 + MLT1H1 LTR MaLR 247 553 -2 470 274 110 12 chr12 118218597 118218761 -25567694 + MIR SINE MIR 28 207 -55 483 254 109 129 chr12 118218763 118219321 -25567134 + LTR67 LTR ERVL 10 556 -1 1706 160 0 57 chr12 118219398 118219716 -25566739 - AluJo SINE Alu -12 300 1 1828 129 0 60 chr12 118219841 118220196 -25566259 + AluSx SINE Alu 1 312 0 2608 173 35 2 chr12 118220231 118220683 -25565772 - MLT1C LTR MaLR 0 467 1 1682 143 0 8 chr12 118220777 118221070 -25565385 + AluJb SINE Alu 27 317 0 330 254 0 0 chr12 118221072 118221143 -25565312 + MLT1J2 LTR MaLR 72 142 -308 438 261 92 15 chr12 118221251 118221381 -25565074 + MLT1J LTR MaLR 226 365 -146 642 183 26 9 chr12 118221397 118221512 -25564943 - FLAM_C SINE Alu -25 118 2 425 248 65 26 chr12 118221524 118221677 -25564778 + MLT1L LTR MaLR 457 615 0 472 241 21 78 chr12 118221881 118222022 -25564433 - MIR SINE MIR -71 191 59 354 242 229 7 chr12 118222027 118222180 -25564275 - L2 LINE L2 -10 3303 3117 1117 266 34 59 chr12 118222215 118222624 -25563831 - LTR16C LTR ERVL 0 491 93 200 213 16 0 chr12 118223914 118223975 -25562480 + GA-rich Low_complexity Low_complexity 1 62 0 563 182 127 0 chr12 118223992 118224102 -25562353 + AluJ SINE Alu 2 125 -177 502 322 0 7 chr12 118225079 118225225 -25561230 + MIR SINE MIR 39 183 -79 757 194 43 56 chr12 118225285 118225517 -25560938 - MER113 DNA MER1_type? -292 229 1 213 244 0 0 chr12 118225524 118225569 -25560886 + L2 LINE L2 3218 3262 -10 1831 122 11 24 chr12 118225640 118225956 -25560499 + AluSx SINE Alu 1 312 0 278 344 11 0 chr12 118226579 118226669 -25559786 + MIR SINE MIR 171 261 -1 593 218 144 16 chr12 118227003 118227191 -25559264 + HAL1 LINE L1 1909 2120 -387 866 184 10 51 chr12 118227191 118227387 -25559068 + AluJ SINE Alu 124 311 -1 2797 184 16 15 chr12 118227431 118227980 -25558475 - L1MC3 LINE L1 -8 7777 7228 226 240 49 110 chr12 118227982 118228228 -25558227 + HAL1 LINE L1 2116 2346 -161 336 218 242 53 chr12 118228422 118228717 -25557738 + MLT1J LTR MaLR 210 489 -22 1906 122 45 0 chr12 118229236 118229523 -25556932 + AluSx SINE Alu 1 300 -12 348 221 185 69 chr12 118229724 118230023 -25556432 + L2 LINE L2 2719 3060 -212 424 200 13 0 chr12 118230067 118230142 -25556313 + L2 LINE L2 3238 3313 0 893 237 5 0 chr12 118230321 118230507 -25555948 + MER58A DNA MER1_type 11 197 -27 620 235 51 46 chr12 118230565 118230795 -25555660 - MLT1L LTR MaLR -174 400 190 285 217 36 48 chr12 118230818 118230901 -25555554 - MLT1L LTR MaLR -533 82 1 655 297 55 35 chr12 118231397 118231687 -25554768 - MLT1K LTR MaLR -154 434 139 660 284 123 5 chr12 118232041 118232245 -25554210 - MIR SINE MIR 0 262 35 426 297 135 5 chr12 118232938 118233130 -25553325 + MIR SINE MIR 14 230 -32 1764 159 0 17 chr12 118233159 118233461 -25552994 - AluJb SINE Alu -15 297 1 1035 226 78 0 chr12 118233541 118233784 -25552671 + MIR SINE MIR 1 262 0 786 186 0 0 chr12 118233893 118234017 -25552438 + FLAM_C SINE Alu 1 124 -9 361 211 0 0 chr12 118234024 118234114 -25552341 + MER63D DNA MER1_type 49 138 -792 540 133 109 70 chr12 118234230 118234358 -25552097 - AluJo SINE Alu -94 218 86 246 147 0 0 chr12 118234365 118234399 -25552056 + MER63D DNA MER1_type 310 343 -718 3266 157 62 9 chr12 118234402 118235044 -25551411 + MER63C DNA MER1_type 255 930 0 999 210 40 48 chr12 118235179 118235535 -25550920 + MLT1G LTR MaLR 1 324 -271 556 294 103 53 chr12 118235707 118235989 -25550466 + MLT1G1-int LTR MaLR 307 602 -769 2653 185 20 26 chr12 118236022 118236606 -25549849 + L1M4 LINE L1 4722 5302 -844 3121 210 40 25 chr12 118236646 118237460 -25548995 - L1M4 LINE L1 -1242 4904 4078 264 172 103 23 chr12 118237458 118237545 -25548910 + L1MD3 LINE L1 4974 5067 -1079 * 6157 66 22 66 chr12 118237564 118237649 -25548806 + SVA Other Other 1 88 -1298 180 0 0 0 chr12 118237649 118237669 -25548786 + (TCTCCC)n Simple_repeat Simple_repeat 4 23 0 6157 66 22 66 chr12 118237669 118239542 -25546913 + SVA Other Other 88 1374 -12 207 0 0 0 chr12 118239542 118239565 -25546890 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 6157 66 22 66 chr12 118239565 118239578 -25546877 + SVA Other Other 1374 1386 0 2223 88 0 7 chr12 118239593 118239890 -25546565 + AluSg SINE Alu 1 295 -15 975 161 86 0 chr12 118240052 118240226 -25546229 + MER46A DNA MER2_type 48 236 0 1402 194 38 24 chr12 118240310 118240765 -25545690 + L1MD3 LINE L1 5040 5492 -743 1701 229 79 9 chr12 118240765 118241197 -25545258 + MLT1C LTR MaLR 6 467 0 1556 180 198 31 chr12 118241198 118241380 -25545075 + L1MD3 LINE L1 5482 5632 -534 2769 157 38 22 chr12 118241380 118241877 -25544578 + MLT1D LTR MaLR 1 505 0 1556 180 198 31 chr12 118241877 118242229 -25544226 + L1MD3 LINE L1 5632 5805 -361 2156 107 0 3 chr12 118242292 118242591 -25543864 + AluSq SINE Alu 1 298 -15 298 366 32 27 chr12 118242788 118242974 -25543481 + MLT1G1-int LTR MaLR 698 884 -487 454 260 74 128 chr12 118243129 118243495 -25542960 + MLT1G1-int LTR MaLR 1023 1368 -3 2422 241 51 18 chr12 118243499 118244072 -25542383 + MLT1G1 LTR MaLR 3 594 -1 3271 118 23 34 chr12 118244214 118244701 -25541754 + L1MB3 LINE L1 5631 6113 -70 1876 104 24 37 chr12 118244701 118244998 -25541457 - AluSx SINE Alu -19 293 1 3271 118 23 34 chr12 118244998 118245069 -25541386 + L1MB3 LINE L1 6113 6183 0 558 281 113 31 chr12 118245252 118245643 -25540812 + L1ME4a LINE L1 5491 5913 -208 319 291 100 21 chr12 118245657 118245804 -25540651 + L1ME4a LINE L1 1188 6117 -1 207 0 0 0 chr12 118245816 118245839 -25540616 + (T)n Simple_repeat Simple_repeat 1 23 0 311 313 109 41 chr12 118246320 118246614 -25539841 + MLT1J LTR MaLR 195 508 -3 198 0 0 0 chr12 118246678 118246700 -25539755 + (TG)n Simple_repeat Simple_repeat 2 23 0 486 259 19 0 chr12 118246765 118246873 -25539582 - MIR SINE MIR -70 192 83 187 365 0 16 chr12 118247016 118247079 -25539376 + MIR SINE MIR 6 67 -195 372 186 10 62 chr12 118247085 118247182 -25539273 - LTR16B LTR ERVL -6 458 367 881 119 8 8 chr12 118247184 118247318 -25539137 + AluJo SINE Alu 1 134 -178 1792 146 32 23 chr12 118247323 118247444 -25539011 + AluJb SINE Alu 1 119 -193 189 0 0 0 chr12 118247444 118247465 -25538990 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1792 146 32 23 chr12 118247465 118247652 -25538803 + AluJb SINE Alu 119 312 0 905 231 60 20 chr12 118247662 118247913 -25538542 - LTR16B LTR ERVL -80 384 124 523 299 6 17 chr12 118248027 118248204 -25538251 + MIR SINE MIR 88 262 0 513 323 32 0 chr12 118248868 118249054 -25537401 - MIR SINE MIR 0 262 71 258 267 103 9 chr12 118249127 118249243 -25537212 + L1ME LINE L1 5693 5819 -302 1779 140 19 25 chr12 118249253 118249567 -25536888 + AluJo SINE Alu 1 312 0 436 169 0 0 chr12 118249616 118249681 -25536774 + Tigger2 DNA MER2_type 1 65 -2653 584 151 0 0 chr12 118249681 118249767 -25536688 - MER8 DNA MER2_type -153 86 1 851 154 0 0 chr12 118249790 118249926 -25536529 + AluJo SINE Alu 1 136 -176 29 0 0 0 chr12 118250018 118250047 -25536408 + AT_rich Low_complexity Low_complexity 1 29 0 340 285 54 39 chr12 118250247 118250377 -25536078 - L1ME4a LINE L1 -16 6105 5974 873 264 60 55 chr12 118250484 118250919 -25535536 + L1ME4a LINE L1 5604 6040 -81 994 225 42 151 chr12 118250984 118251140 -25535315 + L2 LINE L2 2905 3076 -237 1600 143 26 42 chr12 118251140 118251448 -25535007 + AluJo SINE Alu 1 303 -9 2339 73 3 0 chr12 118251450 118251753 -25534702 + AluSc SINE Alu 1 304 -5 994 225 42 151 chr12 118251753 118252051 -25534404 + L2 LINE L2 3077 3312 -1 1472 143 241 14 chr12 118252737 118253086 -25533369 - MSTA LTR MaLR 0 428 1 569 308 9 32 chr12 118253105 118253326 -25533129 - L2 LINE L2 -1 3312 3097 243 221 83 39 chr12 118253538 118253706 -25532749 + MIR SINE MIR 23 261 -1 239 204 0 0 chr12 118253706 118253750 -25532705 - MER103 DNA DNA -79 87 44 2136 114 0 0 chr12 118253775 118254072 -25532383 - AluSx SINE Alu -15 297 1 443 264 241 65 chr12 118254154 118254677 -25531778 + MLT1L LTR MaLR 1 615 0 447 179 0 104 chr12 118255177 118255283 -25531172 - MER117 DNA MER1_type -1 196 102 234 211 202 26 chr12 118255584 118255698 -25530757 - L2 LINE L2 -12 3301 3168 376 298 26 0 chr12 118255730 118255844 -25530611 - L2 LINE L2 -3 3269 3153 942 165 96 27 chr12 118255965 118256153 -25530302 + MER20 DNA MER1_type 16 216 -3 2132 96 3 0 chr12 118256258 118256549 -25529906 + AluSx SINE Alu 5 296 -16 1655 130 48 24 chr12 118256785 118257077 -25529378 + AluJo SINE Alu 1 299 -13 248 343 41 47 chr12 118257231 118257400 -25529055 - MIR SINE MIR -80 182 15 808 216 19 38 chr12 118257517 118257730 -25528725 + MER20 DNA MER1_type 4 212 -7 742 269 39 13 chr12 118258294 118258528 -25527927 + MIR SINE MIR 2 241 -21 249 198 0 0 chr12 118258772 118258853 -25527602 + (CTCA)n Simple_repeat Simple_repeat 2 82 0 * 582 181 0 18 chr12 118258840 118259164 -25527291 + (CA)n Simple_repeat Simple_repeat 1 318 0 211 292 0 0 chr12 118259243 118259291 -25527164 + MIR SINE MIR 214 261 -1 335 358 7 13 chr12 118259304 118259455 -25527000 - MIR SINE MIR -65 197 48 2254 75 0 0 chr12 118259924 118260228 -25526227 - AluSc SINE Alu 0 304 1 560 266 29 29 chr12 118260289 118260462 -25525993 - MIR SINE MIR 0 262 90 2212 94 0 0 chr12 118261218 118261515 -25524940 + AluSx SINE Alu 1 297 -15 270 73 0 0 chr12 118261823 118261864 -25524591 + (TG)n Simple_repeat Simple_repeat 2 42 0 879 214 99 12 chr12 118261878 118262138 -25524317 + L1MD3 LINE L1 7617 7990 -5 698 252 108 0 chr12 118262162 118262376 -25524079 + L1ME2 LINE L1 5926 6162 -2 335 215 0 0 chr12 118262543 118262608 -25523847 - L1ME3A LINE L1 -2 6168 6104 1806 140 0 39 chr12 118262817 118263125 -25523330 - AluJb SINE Alu -9 303 8 645 222 85 7 chr12 118263149 118263302 -25523153 - MIR SINE MIR -70 192 28 322 300 75 33 chr12 118263413 118263653 -25522802 - HAL1 LINE L1 -971 1536 1287 2030 131 0 7 chr12 118264234 118264516 -25521939 + AluSx SINE Alu 1 280 -32 327 156 28 39 chr12 118265057 118265144 -25521311 + MLT1D LTR MaLR 311 397 -108 1945 145 14 24 chr12 118265144 118265441 -25521014 + AluJo SINE Alu 2 295 -17 327 156 28 39 chr12 118265441 118265501 -25520954 + MLT1D LTR MaLR 397 505 0 315 198 123 0 chr12 118266049 118266130 -25520325 - MIR SINE MIR -70 192 102 243 222 111 0 chr12 118266831 118266921 -25519534 + L2 LINE L2 2871 2970 -302 2192 112 27 0 chr12 118267359 118267653 -25518802 - AluSx SINE Alu -10 302 1 2196 116 7 0 chr12 118267653 118267955 -25518500 - AluSx SINE Alu -7 305 2 581 239 80 71 chr12 118268033 118268271 -25518184 + MIR SINE MIR 20 259 -3 * 771 261 58 70 chr12 118268268 118268502 -25517953 - L2 LINE L2 0 3313 3085 1798 167 0 7 chr12 118268502 118268796 -25517659 - AluJo SINE Alu -15 297 6 771 261 58 70 chr12 118268796 118268959 -25517496 - L2 LINE L2 -228 3085 2921 814 179 13 148 chr12 118269827 118270056 -25516399 + MIR SINE MIR 13 210 -52 496 216 47 26 chr12 118270948 118271138 -25515317 - L1ME4a LINE L1 -2 6119 5926 468 251 135 86 chr12 118271200 118271562 -25514893 - L1ME4a LINE L1 -340 5781 5402 1819 188 3 0 chr12 118271778 118272076 -25514379 - AluJb SINE Alu -13 299 1 291 54 0 0 chr12 118272353 118272390 -25514065 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1245 120 6 11 chr12 118272390 118272565 -25513890 - AluSq SINE Alu -139 174 1 1987 125 14 4 chr12 118272732 118273038 -25513417 + AluSx SINE Alu 1 309 0 3403 146 22 25 chr12 118273038 118273516 -25512939 - L1MB7 LINE L1 -14 6170 5693 2320 127 0 0 chr12 118273516 118273824 -25512631 - AluSx SINE Alu -4 308 1 3403 146 22 25 chr12 118273824 118273947 -25512508 - L1MB7 LINE L1 -491 5693 5571 309 325 113 10 chr12 118274374 118274568 -25511887 - L1ME4a LINE L1 0 6121 5908 398 281 150 13 chr12 118274692 118274845 -25511610 + MER91B DNA MER1_type 1 174 -16 212 226 36 71 chr12 118274850 118274934 -25511521 + MER5B DNA MER1_type 76 156 -22 1986 146 3 3 chr12 118275059 118275361 -25511094 + AluJb SINE Alu 1 302 -10 348 224 15 82 chr12 118275376 118275510 -25510945 - L1ME4a LINE L1 -368 5753 5629 234 62 0 0 chr12 118275700 118275732 -25510723 + (TG)n Simple_repeat Simple_repeat 2 33 0 1901 140 0 18 chr12 118275820 118276131 -25510324 + AluSx SINE Alu 1 306 0 695 291 44 5 chr12 118276138 118276341 -25510114 - MIR SINE MIR -6 256 46 584 262 27 43 chr12 118276918 118277029 -25509426 - MIR SINE MIR -70 192 84 2099 116 0 17 chr12 118277029 118277321 -25509134 + AluSx SINE Alu 17 303 -9 584 262 27 43 chr12 118277321 118277396 -25509059 - MIR SINE MIR -178 84 9 448 301 32 0 chr12 118277435 118277558 -25508897 + MER91B DNA MER1_type 2 128 -62 250 264 23 46 chr12 118277574 118277661 -25508794 + MER91B DNA MER1_type 101 185 -5 664 206 39 44 chr12 118277814 118277994 -25508461 + MIR SINE MIR 71 249 -13 23 0 0 0 chr12 118278004 118278027 -25508428 + AT_rich Low_complexity Low_complexity 1 23 0 548 273 33 29 chr12 118278317 118278559 -25507896 - LTR16A LTR ERVL -96 354 112 1825 164 65 0 chr12 118279595 118279888 -25506567 + AluJb SINE Alu 1 312 0 507 319 155 28 chr12 118279890 118280322 -25506133 - MLT1K LTR MaLR -78 510 24 1977 106 0 46 chr12 118280353 118280637 -25505818 + AluSx SINE Alu 29 299 -13 223 246 0 0 chr12 118281166 118281231 -25505224 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 407 97 0 140 chr12 118281231 118281324 -25505131 + Alu SINE Alu 223 302 -10 224 178 47 16 chr12 118281365 118281494 -25504961 + (CAGAGA)n Simple_repeat Simple_repeat 6 138 0 262 185 35 23 chr12 118281525 118281698 -25504757 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 303 294 0 0 chr12 118281699 118281999 -25504456 + (CA)n Simple_repeat Simple_repeat 1 300 0 515 212 183 22 chr12 118282774 118282911 -25503544 + MER91A DNA MER1_type 2 160 -36 287 146 18 0 chr12 118283195 118283250 -25503205 + (TG)n Simple_repeat Simple_repeat 1 56 0 289 149 0 54 chr12 118283531 118283605 -25502850 + (TCC)n Simple_repeat Simple_repeat 2 71 0 855 182 57 0 chr12 118283638 118283797 -25502658 - MER20 DNA MER1_type -51 168 1 330 221 63 100 chr12 118283802 118283992 -25502463 + L1MC5 LINE L1 7570 7752 -209 304 296 153 31 chr12 118283844 118284040 -25502415 - L1MCa LINE L1 -4212 2214 1995 * 245 290 14 50 chr12 118284150 118284347 -25502108 - L1ME LINE L1 -220 5901 5710 615 227 23 31 chr12 118285449 118285525 -25500930 + MER106B DNA MER1_type 2 77 -982 1679 169 61 0 chr12 118285525 118285804 -25500651 - AluJb SINE Alu -16 296 1 615 227 23 31 chr12 118285804 118285966 -25500489 + MER106B DNA MER1_type 77 1057 -2 383 294 28 14 chr12 118286024 118286167 -25500288 + L2 LINE L2 2915 3059 -213 246 62 0 0 chr12 118286224 118286256 -25500199 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 267 286 52 0 chr12 118286258 118286335 -25500120 - L2 LINE L2 -14 3258 3178 2050 117 33 13 chr12 118286575 118286701 -25499754 + AluSx SINE Alu 1 123 -189 2102 134 20 0 chr12 118286701 118286993 -25499462 + AluSx SINE Alu 1 298 -14 2050 117 33 13 chr12 118286993 118287166 -25499289 + AluSx SINE Alu 123 306 -6 315 292 66 60 chr12 118287243 118287582 -25498873 - L2 LINE L2 -168 3145 2793 629 221 68 0 chr12 118287584 118287747 -25498708 + MER68 LTR ERV1 1 174 -388 2174 130 7 0 chr12 118287747 118288039 -25498416 + AluSq SINE Alu 1 294 -19 183 42 0 0 chr12 118288039 118288063 -25498392 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 3092 97 48 46 chr12 118288063 118288350 -25498105 + L1MA2 LINE L1 5765 6055 -249 844 165 0 0 chr12 118288350 118288483 -25497972 + FLAM_C SINE Alu 1 133 0 3092 97 48 46 chr12 118288483 118288734 -25497721 + L1MA2 LINE L1 6055 6304 0 573 194 10 0 chr12 118288813 118288916 -25497539 + MER68 LTR ERV1 433 536 -26 2435 90 0 0 chr12 118288980 118289280 -25497175 + AluSg SINE Alu 1 300 -10 1288 178 8 116 chr12 118289440 118289637 -25496818 - L1M4 LINE L1 -1950 4196 4052 2171 142 3 0 chr12 118289637 118289946 -25496509 - AluSx SINE Alu -2 310 1 1288 178 8 116 chr12 118289946 118290103 -25496352 - L1M4 LINE L1 -2094 4052 3880 205 311 14 0 chr12 118290110 118290184 -25496271 - MIR SINE MIR -64 198 124 1652 117 17 8 chr12 118291193 118291432 -25495023 + AluSx SINE Alu 63 303 -9 1822 142 0 36 chr12 118291570 118291851 -25494604 - AluJo SINE Alu -36 276 6 860 135 0 57 chr12 118291869 118292010 -25494445 - FLAM_C SINE Alu 0 133 1 1058 167 16 0 chr12 118292142 118292328 -25494127 + MER5A DNA MER1_type 1 189 0 738 185 22 39 chr12 118292337 118292515 -25493940 - MER5B DNA MER1_type -3 175 1 286 294 0 0 chr12 118292638 118292706 -25493749 - MIR SINE MIR -84 178 111 1073 139 6 12 chr12 118292852 118293017 -25493438 + AluJb SINE Alu 133 296 -16 201 200 11 133 chr12 118293139 118293229 -25493226 - MIR3 SINE MIR -32 176 98 780 251 85 4 chr12 118293362 118293597 -25492858 - MIR SINE MIR 0 262 9 2389 91 0 3 chr12 118293747 118294032 -25492423 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr12 118294032 118294054 -25492401 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2389 91 0 3 chr12 118294054 118294075 -25492380 + AluSx SINE Alu 286 306 -6 1217 123 6 0 chr12 118294077 118294256 -25492199 + AluSg/x SINE Alu 130 309 -3 668 264 71 91 chr12 118294752 118295146 -25491309 + MLT1J LTR MaLR 30 415 -96 1442 124 34 5 chr12 118295146 118295355 -25491100 - AluSg/x SINE Alu -5 307 93 300 197 16 0 chr12 118295373 118295434 -25491021 + MLT1J LTR MaLR 431 492 -19 447 313 94 0 chr12 118295459 118295619 -25490836 + MIR SINE MIR 77 251 -11 1809 124 11 15 chr12 118296319 118296584 -25489871 - AluSx SINE Alu -6 306 43 643 175 49 126 chr12 118296602 118296734 -25489721 + MER3 DNA MER1_type 1 111 -98 848 103 0 90 chr12 118296734 118296879 -25489576 - FLAM_C SINE Alu -1 132 1 643 175 49 126 chr12 118296879 118296969 -25489486 + MER3 DNA MER1_type 111 206 -3 942 168 16 52 chr12 118296985 118297176 -25489279 - MER5A DNA MER1_type -5 184 1 483 314 37 5 chr12 118297200 118297388 -25489067 + L1ME4a LINE L1 5601 5794 -327 244 250 38 25 chr12 118297417 118297497 -25488958 - MER5A DNA MER1_type -47 142 62 1731 153 71 17 chr12 118297497 118297791 -25488664 - AluJb SINE Alu 0 312 3 1002 163 0 0 chr12 118297803 118297997 -25488458 - AluSg/x SINE Alu 0 328 135 2112 139 3 7 chr12 118298083 118298393 -25488062 + AluJb SINE Alu 1 309 -3 1956 96 4 50 chr12 118298838 118299119 -25487336 - AluJb SINE Alu -12 300 33 328 248 153 22 chr12 118299136 118299273 -25487182 + L1ME4a LINE L1 5966 6120 -1 898 245 170 55 chr12 118299434 118299990 -25486465 + L2 LINE L2 2704 3313 0 1419 173 13 0 chr12 118300068 118300299 -25486156 + AluJb SINE Alu 79 312 0 717 12 0 0 chr12 118300300 118300382 -25486073 + (GGAA)n Simple_repeat Simple_repeat 2 83 0 372 276 63 0 chr12 118300402 118300529 -25485926 + L1ME4a LINE L1 5975 6109 -12 307 181 59 21 chr12 118300631 118300725 -25485730 - MIR3 SINE MIR -49 159 93 408 202 45 0 chr12 118301109 118301198 -25485257 - Charlie8 DNA MER1_type -2234 183 91 1538 39 11 0 chr12 118301267 118301446 -25485009 + AluSc SINE Alu 1 181 -128 27 0 0 0 chr12 118301511 118301538 -25484917 + AT_rich Low_complexity Low_complexity 1 27 0 2329 97 6 10 chr12 118301738 118302049 -25484406 + AluSx SINE Alu 3 312 0 203 241 108 72 chr12 118302089 118302172 -25484283 - MIR3 SINE MIR -11 197 112 404 262 58 39 chr12 118302361 118302567 -25483888 + LTR33 LTR ERVL 15 224 -297 2247 110 3 0 chr12 118302757 118303057 -25483398 - AluSx SINE Alu -11 301 1 194 281 116 16 chr12 118303457 118303578 -25482877 - L2 LINE L2 -230 3042 2910 403 125 0 0 chr12 118303773 118303837 -25482618 + MER103 DNA DNA 20 83 -83 654 206 75 7 chr12 118303905 118304051 -25482404 - MER58C DNA MER1_type -22 193 38 2109 114 0 44 chr12 118304161 118304477 -25481978 + AluSx SINE Alu 1 302 -10 1740 183 14 10 chr12 118304488 118304777 -25481678 + AluJb SINE Alu 3 292 -20 2244 109 0 0 chr12 118305222 118305557 -25480898 + AluSx SINE Alu 1 335 0 319 239 0 14 chr12 118305627 118305698 -25480757 - L2 LINE L2 -2 3311 3242 1304 164 80 55 chr12 118305711 118305826 -25480629 + AluJo SINE Alu 1 112 -200 2512 74 0 3 chr12 118305826 118306125 -25480330 + AluSc SINE Alu 1 298 -11 1304 164 80 55 chr12 118306125 118306284 -25480171 + AluJo SINE Alu 112 282 -30 207 0 0 0 chr12 118306288 118306311 -25480144 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 423 157 0 0 chr12 118306378 118306448 -25480007 - FLAM_A SINE Alu -62 70 1 697 184 0 0 chr12 118306449 118306563 -25479892 + MER68 LTR ERV1 173 286 -276 637 120 54 0 chr12 118306584 118306676 -25479779 - AluJo SINE Alu -17 295 199 1298 171 5 14 chr12 118306715 118306932 -25479523 - AluJo SINE Alu -97 215 1 873 275 68 12 chr12 118306932 118307183 -25479272 + MER68 LTR ERV1 296 560 -2 555 120 12 232 chr12 118307243 118307434 -25479021 - MER53 DNA DNA 0 189 60 2157 109 14 7 chr12 118307434 118307718 -25478737 - AluSx SINE Alu -20 292 7 555 120 12 232 chr12 118307718 118307767 -25478688 - MER53 DNA DNA -129 60 2 207 139 0 0 chr12 118307795 118307831 -25478624 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 804 201 4 0 chr12 118308248 118308500 -25477955 + (CAT)n Simple_repeat Simple_repeat 1 253 0 221 358 45 0 chr12 118308590 118308657 -25477798 - MIR SINE MIR -188 74 5 508 284 82 27 chr12 118308759 118308942 -25477513 + MIR SINE MIR 51 243 -19 413 291 93 52 chr12 118309493 118309676 -25476779 + L1MC4 LINE L1 7329 7503 -539 946 175 112 48 chr12 118309676 118309882 -25476573 - MER20 DNA MER1_type 0 219 1 413 291 93 52 chr12 118309882 118310256 -25476199 + L1MC4 LINE L1 7503 8033 -9 1461 165 0 4 chr12 118310296 118310545 -25475910 + L1MA9 LINE L1 5531 5778 -534 2361 102 0 0 chr12 118310547 118310841 -25475614 + AluSx SINE Alu 1 294 -18 327 201 28 62 chr12 118310860 118310967 -25475488 + L1MC4 LINE L1 1995 6983 -1339 1214 168 13 66 chr12 118310981 118311155 -25475300 + L1MA9 LINE L1 5777 5930 -382 2392 103 0 3 chr12 118311155 118311465 -25474990 + AluSx SINE Alu 1 309 -3 1214 168 13 66 chr12 118311465 118311593 -25474862 + L1MA9 LINE L1 5930 6063 -249 7906 149 31 2 chr12 118311595 118312906 -25473549 + ERVL-B1 LTR ERVL 2629 3977 -1787 5539 126 46 20 chr12 118312905 118312958 -25473497 + ERVL-B1 LTR ERVL 4780 4830 -934 * 2435 98 52 6 chr12 118312958 118313306 -25473149 + THE1B LTR MaLR 1 364 0 5539 126 46 20 chr12 118313306 118314205 -25472250 + ERVL-B1 LTR ERVL 4830 5757 -7 1505 199 78 110 chr12 118314205 118314599 -25471856 + MLT2B1 LTR ERVL 1 375 -145 2139 110 0 11 chr12 118314599 118314880 -25471575 + AluSx SINE Alu 21 298 -14 1505 199 78 110 chr12 118314880 118315014 -25471441 + MLT2B1 LTR ERVL 375 512 -8 343 243 211 20 chr12 118315026 118315178 -25471277 + Charlie8 DNA MER1_type 21 201 -2216 1309 194 48 21 chr12 118315292 118315512 -25470943 + L1MB5 LINE L1 5703 5934 -240 2152 124 3 0 chr12 118315512 118315810 -25470645 + AluSx SINE Alu 1 299 -13 1309 194 48 21 chr12 118315810 118315878 -25470577 + L1MB5 LINE L1 5934 5999 -175 3564 135 19 49 chr12 118315887 118316062 -25470393 + MER39B LTR ERV1 1 180 -473 1826 150 10 0 chr12 118316062 118316355 -25470100 + L1PA16 LINE L1 5870 6165 -1 3564 135 19 49 chr12 118316355 118316851 -25469604 + MER39B LTR ERV1 180 652 -1 936 150 19 0 chr12 118316851 118317011 -25469444 + L1MB5 LINE L1 6012 6174 0 439 254 152 61 chr12 118317020 118317157 -25469298 + MIR SINE MIR 33 195 -67 2003 162 0 0 chr12 118317157 118317447 -25469008 + AluJb SINE Alu 3 292 -20 439 254 152 61 chr12 118317447 118317506 -25468949 + MIR SINE MIR 195 247 -15 2236 125 0 3 chr12 118317507 118317810 -25468645 + AluSx SINE Alu 1 302 -10 2120 114 50 0 chr12 118319329 118319626 -25466829 + AluSx SINE Alu 1 312 0 275 361 8 50 chr12 118320694 118320813 -25465642 - L2 LINE L2 -1 3312 3199 2337 96 0 0 chr12 118320922 118321213 -25465242 - AluSx SINE Alu -19 293 3 935 125 0 8 chr12 118321542 118321670 -25464785 - FLAM_C SINE Alu -6 127 1 693 197 0 0 chr12 118321761 118321888 -25464567 + MER58B DNA MER1_type 207 333 -8 580 183 13 98 chr12 118322106 118322259 -25464196 + MER5B DNA MER1_type 39 178 0 1816 184 47 31 chr12 118322453 118322876 -25463579 + MER63B DNA MER1_type 1 430 -6 371 214 0 22 chr12 118323021 118323110 -25463345 + MIR SINE MIR 68 154 -108 * 826 241 49 65 chr12 118323097 118323342 -25463113 + MIR SINE MIR 16 256 -6 1089 221 66 71 chr12 118323405 118323816 -25462639 + MLT1I LTR MaLR 1 409 0 188 351 106 11 chr12 118323961 118324055 -25462400 + MIR3 SINE MIR 2 104 -104 228 67 0 0 chr12 118325056 118325086 -25461369 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 464 300 124 24 chr12 118325120 118325370 -25461085 - L2 LINE L2 -75 3238 2964 3522 219 20 60 chr12 118325378 118325436 -25461019 + L1ME1 LINE L1 4501 4560 -1606 2208 97 0 0 chr12 118325436 118325715 -25460740 + AluY SINE Alu 31 309 -2 3522 219 20 60 chr12 118325715 118327134 -25459321 + L1ME1 LINE L1 4560 5865 -301 2262 119 0 7 chr12 118327134 118327437 -25459018 + AluSx SINE Alu 1 301 -11 3522 219 20 60 chr12 118327437 118327633 -25458822 + L1ME1 LINE L1 5865 6067 -99 370 197 130 61 chr12 118327681 118327982 -25458473 + L2 LINE L2 2700 3025 -247 449 196 319 22 chr12 118329270 118329408 -25457047 + MER5A DNA MER1_type 9 187 -2 2406 101 0 0 chr12 118329665 118329971 -25456484 - AluSx SINE Alu -6 306 1 1761 148 0 25 chr12 118330840 118331117 -25455338 + AluJo SINE Alu 33 302 -10 1649 217 35 135 chr12 118331334 118332240 -25454215 + L1MC5 LINE L1 6681 7496 -465 271 322 13 20 chr12 118332241 118332393 -25454062 + GA-rich Low_complexity Low_complexity 3 153 0 3070 204 87 15 chr12 118332396 118333200 -25453255 + L1MC4a LINE L1 6947 7808 0 262 157 398 0 chr12 118333846 118333929 -25452526 + MIR SINE MIR 117 232 -30 1212 211 122 22 chr12 118334395 118334665 -25451790 + AluJo SINE Alu 1 297 -15 737 175 9 0 chr12 118334711 118334825 -25451630 + AluJo/FLAM SINE Alu 12 126 -186 1915 173 0 0 chr12 118334826 118335126 -25451329 + AluJo SINE Alu 1 300 -12 733 205 18 24 chr12 118335187 118335353 -25451102 - MIR SINE MIR -70 192 28 216 0 0 0 chr12 118335481 118335505 -25450950 + (CA)n Simple_repeat Simple_repeat 1 24 0 557 250 20 10 chr12 118336367 118336524 -25449931 - MIR SINE MIR -63 145 1 181 348 93 17 chr12 118336878 118336996 -25449459 - L2 LINE L2 -214 3058 2932 635 244 49 27 chr12 118337097 118337322 -25449133 + MLT1K LTR MaLR 353 582 -6 180 0 0 0 chr12 118337474 118337494 -25448961 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 243 336 9 71 chr12 118337780 118337893 -25448562 - L2 LINE L2 -1 3312 3207 288 260 226 83 chr12 118338099 118338303 -25448152 - MIR SINE MIR 0 262 30 * 348 333 50 21 chr12 118338300 118338441 -25448014 + MIR SINE MIR 106 250 -12 532 266 69 37 chr12 118338994 118339212 -25447243 - MIR SINE MIR -6 256 32 418 247 21 0 chr12 118339237 118339330 -25447125 - MIR SINE MIR -87 175 81 221 303 17 0 chr12 118340489 118340608 -25445847 + (CA)n Simple_repeat Simple_repeat 2 122 0 372 130 0 0 chr12 118340740 118340809 -25445646 + (CA)n Simple_repeat Simple_repeat 2 70 0 291 321 128 16 chr12 118341655 118341842 -25444613 + L2 LINE L2 2830 3037 -235 197 293 35 0 chr12 118341847 118341905 -25444550 - L2 LINE L2 -52 3220 3161 229 270 44 106 chr12 118342533 118342571 -25443884 + L2 LINE L2 2610 2649 -665 2224 119 3 3 chr12 118342571 118342873 -25443582 - AluSx SINE Alu -10 302 1 229 270 44 106 chr12 118342873 118343127 -25443328 + L2 LINE L2 2649 2884 -430 2097 110 14 0 chr12 118343991 118344273 -25442182 - AluSq SINE Alu -5 308 23 381 204 43 21 chr12 118344444 118344537 -25441918 + MIR3 SINE MIR 81 175 -33 347 343 42 24 chr12 118345238 118345404 -25441051 - MIR SINE MIR 0 262 94 274 269 69 54 chr12 118345410 118345519 -25440936 - MIR SINE MIR -117 145 32 2114 142 0 0 chr12 118345519 118345814 -25440641 - AluJb SINE Alu -17 295 1 274 269 69 54 chr12 118345814 118345834 -25440621 - MIR SINE MIR -230 32 14 1519 198 7 3 chr12 118346201 118346484 -25439971 + AluJb SINE Alu 9 292 -20 200 163 0 102 chr12 118347734 118347783 -25438672 - MIR SINE MIR -64 144 101 375 274 0 126 chr12 118347787 118347875 -25438580 + MIR SINE MIR 34 91 -171 2095 152 0 3 chr12 118347875 118348185 -25438270 + AluJb SINE Alu 1 309 -3 375 274 0 126 chr12 118348185 118348271 -25438184 + MIR SINE MIR 91 186 -76 323 227 0 0 chr12 118348505 118348571 -25437884 - MIR SINE MIR -79 183 118 347 151 178 0 chr12 118348864 118348937 -25437518 + MLT1C LTR MaLR 6 91 -376 437 117 0 0 chr12 118348972 118349032 -25437423 + AluS SINE Alu 2 61 -257 1021 263 64 15 chr12 118349044 118349386 -25437069 + MLT1C LTR MaLR 109 467 0 237 276 49 65 chr12 118349871 118349994 -25436461 - MIR SINE MIR -126 136 16 2169 95 35 3 chr12 118350426 118350710 -25435745 + AluSx SINE Alu 1 293 -19 536 287 43 88 chr12 118350824 118351373 -25435082 + L2 LINE L2 2531 3049 -223 463 264 34 54 chr12 118351637 118351785 -25434670 - MIR SINE MIR -107 155 11 221 167 79 0 chr12 118351901 118351961 -25434494 + MIR SINE MIR 95 143 -65 507 296 41 12 chr12 118352241 118352413 -25434042 + MIR SINE MIR 20 196 -66 380 76 106 0 chr12 118352532 118352598 -25433857 - L1MD2 LINE L1 0 6359 6287 406 219 0 24 chr12 118352598 118352680 -25433775 + AluS SINE Alu 2 81 -231 1957 216 79 10 chr12 118352682 118353187 -25433268 - L1MD1 LINE L1 -56 6186 5647 522 243 103 7 chr12 118353223 118353359 -25433096 - L2 LINE L2 -1 3312 3164 2326 76 16 38 chr12 118353596 118353913 -25432542 - AluSx SINE Alu -2 310 1 606 221 37 101 chr12 118354025 118354082 -25432373 - MIR SINE MIR -10 252 193 839 163 0 0 chr12 118354082 118354205 -25432250 - FLAM_A SINE Alu -10 123 1 606 221 37 101 chr12 118354205 118354364 -25432091 - MIR SINE MIR -69 193 50 361 323 190 21 chr12 118355079 118355416 -25431039 - L2 LINE L2 0 3313 2920 334 289 96 19 chr12 118355462 118355618 -25430837 + L2 LINE L2 2830 2997 -316 1037 201 31 0 chr12 118355625 118355819 -25430636 + MER63A DNA MER1_type 9 208 -2 609 258 115 10 chr12 118355823 118356032 -25430423 + L2 LINE L2 3083 3313 0 322 233 42 84 chr12 118356849 118357064 -25429391 + L2 LINE L2 2903 3108 -164 199 376 0 0 chr12 118357238 118357331 -25429124 + L2 LINE L2 3128 3220 -93 748 253 55 0 chr12 118357808 118358010 -25428445 + MER20 DNA MER1_type 3 215 -4 180 302 0 0 chr12 118358509 118358552 -25427903 + L2 LINE L2 3213 3255 -17 369 292 119 11 chr12 118358977 118359162 -25427293 - LTR16C LTR ERVL -214 277 73 274 221 13 26 chr12 118359353 118359430 -25427025 + LTR67 LTR ERVL 6 81 -476 341 185 25 49 chr12 118360016 118360097 -25426358 - MIR SINE MIR -80 182 104 238 216 162 14 chr12 118360119 118360193 -25426262 - MIR SINE MIR 0 262 178 * 1146 237 72 72 chr12 118360188 118360306 -25426149 - L2 LINE L2 0 3313 3196 1711 156 27 34 chr12 118360306 118360601 -25425854 - AluJo SINE Alu -19 293 1 1146 237 72 72 chr12 118360601 118360913 -25425542 - L2 LINE L2 -116 3197 2883 572 242 8 0 chr12 118360911 118361039 -25425416 - MIR SINE MIR -102 160 32 * 240 158 158 0 chr12 118361526 118361583 -25424872 + MIR SINE MIR 80 145 -117 334 268 169 28 chr12 118362127 118362309 -25424146 + L2 LINE L2 2578 2807 -507 1905 162 0 10 chr12 118362309 118362606 -25423849 - AluJo SINE Alu -18 294 1 334 268 169 28 chr12 118362606 118362677 -25423778 + L2 LINE L2 2807 2867 -447 442 291 43 7 chr12 118362706 118362847 -25423608 + L2 LINE L2 3167 3312 -1 518 191 46 46 chr12 118364452 118364583 -25421872 + MIR SINE MIR 23 153 -109 748 224 215 5 chr12 118364880 118365085 -25421370 + MIR SINE MIR 14 261 -1 292 317 93 19 chr12 118365178 118365339 -25421116 + MIR SINE MIR 77 249 -13 294 214 117 43 chr12 118366634 118366774 -25419681 - MER5A DNA MER1_type -26 163 4 472 152 6 175 chr12 118366852 118367023 -25419432 - MER53 DNA DNA -1 188 47 1749 179 17 3 chr12 118367023 118367313 -25419142 - AluJo SINE Alu -18 294 1 838 184 44 0 chr12 118367314 118367472 -25418983 + MER20 DNA MER1_type 54 218 -1 1498 251 87 24 chr12 118367476 118367971 -25418484 + L1ME3A LINE L1 5645 6170 0 6118 158 27 16 chr12 118368644 118370522 -25415933 + L1MC1 LINE L1 4421 6316 -17 950 103 0 7 chr12 118370531 118370677 -25415778 + (GGAA)n Simple_repeat Simple_repeat 3 147 0 1540 149 63 35 chr12 118371104 118371419 -25415036 + MLT1B LTR MaLR 1 324 -66 375 78 0 0 chr12 118371419 118371470 -25414985 + (CA)n Simple_repeat Simple_repeat 2 52 0 223 365 19 9 chr12 118371519 118371626 -25414829 - L2 LINE L2 -224 3048 2941 232 250 226 9 chr12 118371723 118371838 -25414617 - MIR SINE MIR -19 243 105 2067 122 7 3 chr12 118371871 118372167 -25414288 - AluSx SINE Alu -15 297 1 206 28 0 83 chr12 118373617 118373653 -25412802 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 461 208 19 28 chr12 118373684 118373790 -25412665 - MLT1K LTR MaLR -316 272 168 587 317 75 13 chr12 118374036 118374263 -25412192 - MIR SINE MIR -20 242 2 802 214 32 0 chr12 118374623 118374810 -25411645 + L1MEd LINE L1 2 194 -5925 503 242 22 67 chr12 118374876 118375054 -25411401 + L1MEd LINE L1 345 514 -5605 1052 197 0 0 chr12 118375070 118375253 -25411202 - MER5A DNA MER1_type -6 183 1 2308 114 0 7 chr12 118375355 118375661 -25410794 + AluSx SINE Alu 1 304 -8 521 254 158 0 chr12 118375661 118375826 -25410629 + MER58A DNA MER1_type 4 194 -30 624 175 76 6 chr12 118375844 118376015 -25410440 + L1MEd LINE L1 639 821 -5298 363 233 209 12 chr12 118376082 118376254 -25410201 - MIR SINE MIR -11 251 46 620 241 126 25 chr12 118376528 118376727 -25409728 - MIR SINE MIR -2 260 42 435 277 144 63 chr12 118377972 118378489 -25407966 + L2 LINE L2 2753 3311 -2 181 288 41 41 chr12 118378826 118378899 -25407556 - L2 LINE L2 -3 3310 3238 392 315 81 34 chr12 118378904 118379139 -25407316 - MIR SINE MIR -8 254 9 342 0 0 0 chr12 118379774 118379812 -25406643 + (TG)n Simple_repeat Simple_repeat 1 38 0 327 334 174 22 chr12 118380400 118380762 -25405693 - L2 LINE L2 -18 3254 2838 3023 130 95 0 chr12 118381793 118382299 -25404156 + MER41C LTR ERV1 1 554 0 396 111 0 0 chr12 118382391 118382463 -25403992 + (TC)n Simple_repeat Simple_repeat 2 73 0 1802 257 75 16 chr12 118384192 118384749 -25401706 + MLT1G1 LTR MaLR 1 590 -5 219 305 86 0 chr12 118384998 118385103 -25401352 - MIR SINE MIR -62 146 33 680 223 136 50 chr12 118385944 118386064 -25400391 + MIR SINE MIR 19 127 -135 2266 113 0 0 chr12 118386064 118386355 -25400100 + AluSx SINE Alu 1 291 -21 680 223 136 50 chr12 118386355 118386454 -25400001 + MIR SINE MIR 127 257 -5 36 0 0 0 chr12 118386460 118386496 -25399959 + AT_rich Low_complexity Low_complexity 1 36 0 2439 100 3 0 chr12 118386808 118387118 -25399337 - AluSx SINE Alu -1 311 1 189 167 0 0 chr12 118387372 118387408 -25399047 - L2 LINE L2 -341 2972 2937 482 318 13 0 chr12 118387747 118387901 -25398554 - MIR SINE MIR 0 262 107 476 302 0 7 chr12 118388231 118388529 -25397926 + (CA)n Simple_repeat Simple_repeat 1 296 0 227 309 129 10 chr12 118388767 118388961 -25397494 - L2 LINE L2 -228 3044 2828 2144 205 36 19 chr12 118389045 118389742 -25396713 + L1MEc LINE L1 2032 2700 -3515 1771 91 66 4 chr12 118389856 118390130 -25396325 - L1MA4A LINE L1 -5 6298 6008 586 327 113 36 chr12 118390175 118390818 -25395637 - L2 LINE L2 -609 2705 2013 182 205 51 0 chr12 118390960 118390999 -25395456 + MIR SINE MIR 108 148 -60 810 198 3 10 chr12 118391597 118391905 -25394550 + (TGGA)n Simple_repeat Simple_repeat 1 305 0 445 307 57 32 chr12 118392728 118393296 -25393159 + L2 LINE L2 2650 3272 0 572 197 158 0 chr12 118393300 118393452 -25393003 + MIR SINE MIR 16 191 -71 21 57 0 0 chr12 118393625 118393660 -25392795 + AT_rich Low_complexity Low_complexity 1 35 0 2382 102 0 0 chr12 118394034 118394339 -25392116 + AluSx SINE Alu 1 305 -7 566 261 53 53 chr12 118394437 118394663 -25391792 + MIR SINE MIR 12 237 -25 477 315 65 5 chr12 118395092 118395292 -25391163 - MIR SINE MIR -14 248 37 202 185 0 37 chr12 118395369 118395423 -25391032 + (TAA)n Simple_repeat Simple_repeat 1 52 0 428 267 33 17 chr12 118395538 118395658 -25390797 + L2 LINE L2 3192 3313 0 638 269 128 11 chr12 118396261 118396663 -25389792 - L2 LINE L2 -3 3310 2781 229 343 0 0 chr12 118396960 118397030 -25389425 - LTR16B LTR ERVL -264 200 131 405 259 0 36 chr12 118397167 118397279 -25389176 + MIR SINE MIR 50 157 -105 1349 99 6 6 chr12 118397279 118397460 -25388995 - AluSx SINE Alu -131 181 1 433 320 108 25 chr12 118397541 118397857 -25388598 + L2 LINE L2 2858 3199 -73 26 74 0 0 chr12 118397864 118397918 -25388537 + AT_rich Low_complexity Low_complexity 1 54 0 1090 165 12 73 chr12 118397977 118398055 -25388400 - MIR SINE MIR -10 252 171 1864 161 7 20 chr12 118398055 118398359 -25388096 + AluJb SINE Alu 1 300 -12 1090 165 12 73 chr12 118398359 118398528 -25387927 - MIR SINE MIR -91 171 20 225 212 15 0 chr12 118399241 118399307 -25387148 + L2 LINE L2 2920 2986 -327 429 330 58 6 chr12 118399327 118399500 -25386955 - Charlie8 DNA MER1_type -2235 182 1 820 212 24 68 chr12 118399716 118399943 -25386512 - MIR SINE MIR -28 234 18 703 147 70 0 chr12 118400072 118400201 -25386254 + MER58A DNA MER1_type 4 141 0 440 289 56 22 chr12 118400425 118400678 -25385777 - L2 LINE L2 -284 3029 2753 2123 139 0 0 chr12 118400683 118400984 -25385471 - AluJo SINE Alu -9 303 3 1918 138 54 0 chr12 118401175 118401451 -25385004 + AluSx SINE Alu 17 307 -5 212 184 0 0 chr12 118402021 118402059 -25384396 + A-rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr12 118405012 118405035 -25381420 + (TC)n Simple_repeat Simple_repeat 2 24 0 298 286 11 11 chr12 118405733 118405824 -25380631 + GA-rich Low_complexity Low_complexity 5 95 0 219 88 0 0 chr12 118406096 118406130 -25380325 + (CGG)n Simple_repeat Simple_repeat 1 34 0 307 0 23 23 chr12 118406234 118406278 -25380177 + (TCC)n Simple_repeat Simple_repeat 1 44 0 32 81 0 0 chr12 118406605 118406679 -25379776 + GC_rich Low_complexity Low_complexity 1 74 0 51 84 0 22 chr12 118406896 118406987 -25379468 + GC_rich Low_complexity Low_complexity 1 88 -87 257 0 30 0 chr12 118406987 118407020 -25379435 + (CCG)n Simple_repeat Simple_repeat 2 35 0 51 84 0 22 chr12 118407020 118407107 -25379348 + GC_rich Low_complexity Low_complexity 88 175 0 22 80 0 0 chr12 118407164 118407214 -25379241 + GC_rich Low_complexity Low_complexity 1 50 0 330 67 0 0 chr12 118408169 118408214 -25378241 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2422 204 46 47 chr12 118409222 118409880 -25376575 + L1MC4 LINE L1 7386 8042 0 958 190 35 0 chr12 118411200 118411400 -25375055 + MIR SINE MIR 5 211 -51 351 323 53 29 chr12 118411381 118411613 -25374842 - MIR SINE MIR -26 236 3 * 1350 244 137 13 chr12 118411800 118412224 -25374231 + LTR33 LTR ERVL 1 488 -33 2268 128 0 0 chr12 118412224 118412529 -25373926 + AluSx SINE Alu 1 305 -7 1350 244 137 13 chr12 118412529 118412564 -25373891 + LTR33 LTR ERVL 488 517 -4 1791 154 10 42 chr12 118412822 118413133 -25373322 - AluJo SINE Alu -9 303 3 1077 276 68 34 chr12 118413284 118413780 -25372675 + L1M4 LINE L1 4487 4999 -1147 201 74 0 0 chr12 118413891 118413918 -25372537 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9284 153 40 18 chr12 118413982 118415611 -25370844 - ERVL-B1 LTR ERVL -3148 2616 951 2695 70 3 6 chr12 118415626 118415981 -25370474 - THE1A LTR MaLR 0 355 2 11281 96 8 6 chr12 118415982 118417128 -25369327 - THE1A-int LTR MaLR 0 1580 429 2365 113 0 3 chr12 118417128 118417438 -25369017 - AluSx SINE Alu -3 309 1 11281 96 8 6 chr12 118417438 118417868 -25368587 - THE1A-int LTR MaLR -1151 429 1 2490 103 11 0 chr12 118417868 118418219 -25368236 - THE1A LTR MaLR 0 355 1 2808 225 47 55 chr12 118418219 118419122 -25367333 - ERVL-B1 LTR ERVL -4751 903 1 244 54 108 0 chr12 118419122 118419159 -25367296 - MLT2B1 LTR ERVL 0 520 480 276 30 0 0 chr12 118419159 118419192 -25367263 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr12 118419191 118419220 -25367235 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 504 276 13 13 chr12 118419285 118419441 -25367014 - L2 LINE L2 -179 3093 2938 245 284 29 29 chr12 118419530 118419632 -25366823 - L2 LINE L2 -540 2774 2673 * 367 294 131 39 chr12 118419621 118419903 -25366552 - L2 LINE L2 -18 3295 2988 3037 186 33 10 chr12 118419903 118420532 -25365923 + L1MB5 LINE L1 5500 6139 -35 640 242 184 21 chr12 118420601 118420981 -25365474 - L2 LINE L2 -526 2788 2347 488 274 85 28 chr12 118421132 118421344 -25365111 - MIR SINE MIR -11 251 28 1897 142 23 13 chr12 118421498 118421801 -25364654 - AluJb SINE Alu -2 310 5 287 64 0 21 chr12 118421920 118421967 -25364488 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1770 182 0 28 chr12 118422070 118422389 -25364066 - AluJb SINE Alu -2 310 1 218 176 265 0 chr12 118422499 118422567 -25363888 + MIR SINE MIR 37 122 -86 265 189 0 0 chr12 118423049 118423102 -25363353 + MIR SINE MIR 80 132 -130 664 239 183 41 chr12 118423228 118423622 -25362833 + LTR16A1 LTR ERVL 8 457 0 232 355 19 9 chr12 118423656 118423763 -25362692 + MIR SINE MIR 80 187 -75 475 269 32 2 chr12 118424428 118424590 -25361865 + MIR SINE MIR 18 146 -62 286 257 0 0 chr12 118425338 118425438 -25361017 + MIR SINE MIR 79 179 -29 261 0 0 0 chr12 118425798 118425827 -25360628 + (CA)n Simple_repeat Simple_repeat 2 30 0 244 341 12 0 chr12 118425906 118425991 -25360464 + MIR SINE MIR 75 160 -102 690 229 67 46 chr12 118426012 118426252 -25360203 - MIR SINE MIR 0 262 18 227 329 0 0 chr12 118426266 118426336 -25360119 + L2 LINE L2 3191 3260 -12 2346 92 10 0 chr12 118426375 118426669 -25359786 + AluSx SINE Alu 1 297 -15 212 321 0 93 chr12 118428671 118428811 -25357644 + L2 LINE L2 3177 3303 -10 274 316 133 19 chr12 118428925 118429083 -25357372 + L2 LINE L2 2889 3064 -208 1745 152 14 35 chr12 118429948 118430238 -25356217 - AluJo SINE Alu -28 284 1 2141 103 7 26 chr12 118430239 118430416 -25356039 - AluSg SINE Alu -14 296 126 249 57 0 0 chr12 118430416 118430451 -25356004 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 2141 103 7 26 chr12 118430451 118430575 -25355880 - AluSg SINE Alu -184 126 1 2259 172 12 7 chr12 118430586 118431016 -25355439 - L1MC1 LINE L1 0 6333 5902 236 0 0 0 chr12 118431016 118431043 -25355412 + THE1B LTR MaLR 2 28 -336 232 171 0 0 chr12 118431036 118431077 -25355378 + MLT1B LTR MaLR 342 382 -8 * 238 197 45 0 chr12 118431146 118431212 -25355243 - MIR SINE MIR -98 164 96 497 285 20 13 chr12 118431265 118431416 -25355039 + MIR SINE MIR 4 155 -107 2099 130 3 3 chr12 118431422 118431715 -25354740 + AluSx SINE Alu 1 293 -19 3169 165 42 0 chr12 118432521 118433121 -25353334 + L1MB3 LINE L1 5550 6174 -9 270 254 15 0 chr12 118433125 118433192 -25353263 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2057 128 0 23 chr12 118433284 118433588 -25352867 + AluJo SINE Alu 1 297 -15 285 330 9 27 chr12 118433627 118433739 -25352716 - MIR SINE MIR -138 124 15 875 87 318 0 chr12 118433752 118433925 -25352530 - MER30 DNA MER1_type -1 229 2 1144 132 32 36 chr12 118433953 118434173 -25352282 - MER20 DNA MER1_type 0 219 1 265 149 164 60 chr12 118434683 118434750 -25351705 + L2 LINE L2 3230 3303 -10 228 122 14 108 chr12 118434785 118434859 -25351596 + HAL1b LINE L1 1282 1348 0 2164 111 7 3 chr12 118436574 118436894 -25349561 + AluSx SINE Alu 1 312 0 570 291 114 0 chr12 118436977 118437214 -25349241 - Charlie8 DNA MER1_type -2153 264 1 222 118 0 0 chr12 118437792 118437826 -25348629 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 531 242 0 23 chr12 118437827 118437896 -25348559 - L2 LINE L2 -25 3288 3222 1626 185 51 15 chr12 118437896 118438231 -25348224 - MER7A DNA MER2_type 0 346 2 531 242 0 23 chr12 118438231 118438293 -25348162 - L2 LINE L2 -91 3222 3160 1574 198 50 19 chr12 118438349 118438727 -25347728 - MLT1B LTR MaLR 0 390 1 405 275 31 44 chr12 118439503 118439663 -25346792 + MIR SINE MIR 51 208 -54 1084 243 8 4 chr12 118439697 118439944 -25346511 + MIR SINE MIR 13 260 -2 188 33 0 33 chr12 118440488 118440518 -25345937 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 2285 103 6 28 chr12 118441266 118441586 -25344869 + AluSq SINE Alu 1 313 0 300 353 0 0 chr12 118441738 118441840 -25344615 + MER117 DNA MER1_type 15 116 -81 272 217 14 29 chr12 118441842 118441911 -25344544 - L2 LINE L2 -2 3270 3203 * 388 317 26 87 chr12 118441910 118442140 -25344315 - L2 LINE L2 -484 2830 2615 821 136 0 15 chr12 118442899 118443031 -25343424 + FLAM_C SINE Alu 4 133 0 28 0 0 0 chr12 118443031 118443059 -25343396 + AT_rich Low_complexity Low_complexity 1 28 0 186 330 0 64 chr12 118443321 118443415 -25343040 + L3 LINE CR1 180 267 -1310 1606 193 0 11 chr12 118443711 118444020 -25342435 - AluJo SINE Alu 0 306 1 23 0 0 0 chr12 118444094 118444117 -25342338 + AT_rich Low_complexity Low_complexity 1 23 0 2331 103 6 6 chr12 118444313 118444625 -25341830 + AluSx SINE Alu 1 312 0 297 192 164 0 chr12 118444645 118444718 -25341737 - L2 LINE L2 0 3313 3229 270 300 6 29 chr12 118444895 118445065 -25341390 + (TG)n Simple_repeat Simple_repeat 2 167 0 190 344 52 13 chr12 118445120 118445274 -25341181 - L2 LINE L2 -469 2845 2686 238 276 78 69 chr12 118445296 118445629 -25340826 - L2 LINE L2 -735 2579 2244 590 242 99 16 chr12 118446100 118446282 -25340173 - MIR SINE MIR -64 198 2 2191 134 0 3 chr12 118446299 118446604 -25339851 - AluJb SINE Alu -6 306 3 420 257 0 10 chr12 118446638 118446739 -25339716 - MIR SINE MIR -103 159 60 520 274 226 24 chr12 118447314 118447334 -25339121 + MIR SINE MIR 8 23 -239 2405 94 0 0 chr12 118447334 118447633 -25338822 + AluSx SINE Alu 1 299 -13 520 274 226 24 chr12 118447633 118447820 -25338635 + MIR SINE MIR 23 257 -5 644 224 42 7 chr12 118447853 118447996 -25338459 - MER58B DNA MER1_type -15 326 179 692 296 36 40 chr12 118448044 118448318 -25338137 + MLT1K LTR MaLR 316 588 0 670 281 5 28 chr12 118448479 118448696 -25337759 + MIR SINE MIR 50 261 -1 2492 103 0 0 chr12 118448864 118449175 -25337280 + AluSx SINE Alu 1 311 -1 252 271 0 0 chr12 118449459 118449518 -25336937 + MER5A DNA MER1_type 128 186 -3 612 237 58 0 chr12 118449531 118449687 -25336768 + MLT1K LTR MaLR 378 542 -46 509 294 0 29 chr12 118450075 118450245 -25336210 + MIR SINE MIR 21 185 -77 719 262 54 0 chr12 118450271 118450439 -25336016 - MER63A DNA MER1_type -33 177 1 1910 163 0 10 chr12 118450585 118450892 -25335563 - AluJo SINE Alu -8 304 1 769 267 67 9 chr12 118451022 118451247 -25335208 - MIR SINE MIR -6 256 19 500 208 135 78 chr12 118452156 118452240 -25334215 - MIR SINE MIR -26 236 158 2154 117 3 0 chr12 118452240 118452562 -25333893 - AluSx SINE Alu 0 325 3 500 208 135 78 chr12 118452562 118452668 -25333787 - MIR SINE MIR -104 158 34 1531 226 62 18 chr12 118453563 118454002 -25332453 + MLT1C LTR MaLR 1 458 -9 2340 88 37 0 chr12 118454728 118455025 -25331430 + AluSp SINE Alu 1 308 -5 186 264 19 0 chr12 118455053 118455106 -25331349 - MIR SINE MIR -159 103 50 702 105 0 0 chr12 118455113 118455218 -25331237 - AluSg/x SINE Alu -1 309 205 342 265 0 0 chr12 118456484 118456601 -25329854 + (TG)n Simple_repeat Simple_repeat 2 118 0 357 234 0 0 chr12 118456650 118456761 -25329694 + (TG)n Simple_repeat Simple_repeat 2 112 0 660 306 72 60 chr12 118457997 118458288 -25328167 - L2 LINE L2 0 3272 2986 826 194 61 11 chr12 118458288 118458468 -25327987 - MER5A DNA MER1_type 0 189 1 660 306 72 60 chr12 118458468 118458884 -25327571 - L2 LINE L2 -286 2986 2556 211 331 33 41 chr12 118459119 118459240 -25327215 - MIR SINE MIR -56 206 87 287 169 15 31 chr12 118459428 118459493 -25326962 - MER116 DNA Mariner -16 64 1 180 0 0 0 chr12 118459912 118459932 -25326523 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 139 23 19 chr12 118460607 118460916 -25325539 - AluJo SINE Alu 0 312 3 589 291 0 8 chr12 118460942 118461117 -25325338 + MIR SINE MIR 34 205 -57 1076 202 34 5 chr12 118461446 118461654 -25324801 - MER20 DNA MER1_type -5 214 1 2251 111 3 0 chr12 118461972 118462261 -25324194 - AluSx SINE Alu -22 290 1 448 305 142 0 chr12 118462365 118462555 -25323900 + MIR SINE MIR 46 262 0 383 235 25 0 chr12 118463191 118463272 -25323183 - L2 LINE L2 -6 3307 3225 472 322 84 38 chr12 118463758 118463997 -25322458 + MIR SINE MIR 11 260 -2 * 539 189 16 16 chr12 118463991 118464113 -25322342 + MIR SINE MIR 74 195 -67 243 0 0 0 chr12 118464164 118464191 -25322264 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2042 115 7 26 chr12 118464248 118464553 -25321902 - AluSx SINE Alu -13 299 1 598 313 38 21 chr12 118467487 118467727 -25318728 - MIR SINE MIR -3 259 16 683 301 18 13 chr12 118468105 118468334 -25318121 + MIR SINE MIR 2 231 -31 428 311 61 42 chr12 118468616 118468880 -25317575 + L1MC4a LINE L1 5496 5764 -2044 321 231 31 115 chr12 118468939 118469069 -25317386 + L1MC4a LINE L1 5727 5845 -1963 1185 156 4 91 chr12 118469110 118469341 -25317114 + AluJo SINE Alu 86 296 -16 2309 69 7 10 chr12 118469352 118469643 -25316812 + AluY SINE Alu 1 290 -21 392 289 30 22 chr12 118469874 118470009 -25316446 + MIR SINE MIR 8 143 -119 269 239 0 33 chr12 118470458 118470638 -25315817 + CT-rich Low_complexity Low_complexity 1 174 0 412 293 36 0 chr12 118471176 118471316 -25315139 + MIR SINE MIR 36 180 -82 2223 136 0 0 chr12 118471353 118471648 -25314807 - AluSx SINE Alu -16 296 2 310 249 41 71 chr12 118471856 118472053 -25314402 + L2 LINE L2 2920 3110 -203 225 200 0 0 chr12 118472715 118472755 -25313700 - L2 LINE L2 -2 3311 3272 636 252 176 38 chr12 118473086 118473512 -25312943 - L2 LINE L2 -314 2999 2521 1871 155 41 0 chr12 118473572 118473863 -25312592 + AluJb SINE Alu 1 303 -9 1208 229 16 52 chr12 118473863 118474229 -25312226 - L1ME3A LINE L1 -125 6045 5693 499 203 250 7 chr12 118474234 118474382 -25312073 - MER5A DNA MER1_type 0 189 6 1397 241 88 10 chr12 118474388 118474841 -25311614 - L1ME3A LINE L1 -477 5685 5191 592 286 30 10 chr12 118475631 118475830 -25310625 + MIR SINE MIR 31 233 -29 1977 130 22 0 chr12 118475866 118476196 -25310259 - AluSx SINE Alu 0 336 1 250 314 14 36 chr12 118476290 118476430 -25310025 + L2 LINE L2 2920 3056 -257 2076 127 0 11 chr12 118476686 118476996 -25309459 - AluSx SINE Alu 0 311 5 1042 248 9 4 chr12 118477254 118477480 -25308975 + Charlie1 DNA MER1_type 1 227 -2534 582 237 7 7 chr12 118477477 118477616 -25308839 + Charlie1 DNA MER1_type 2623 2761 0 * 661 193 28 7 chr12 118478692 118478837 -25307618 + MIR SINE MIR 31 178 -84 705 277 36 29 chr12 118478929 118479207 -25307248 + Charlie8 DNA MER1_type 3 282 -2135 181 260 188 31 chr12 118479248 118479344 -25307111 + L2 LINE L2 3197 3307 -6 2855 211 37 3 chr12 118480419 118481046 -25305409 - L1MB7 LINE L1 -10 6174 5527 803 190 63 44 chr12 118481202 118481407 -25305048 + MER3 DNA MER1_type 1 209 0 656 296 41 10 chr12 118481603 118481839 -25304616 + MIR SINE MIR 1 239 -23 526 220 34 0 chr12 118481962 118482080 -25304375 + L2 LINE L2 3192 3313 0 608 317 121 16 chr12 118482739 118482763 -25303692 - L2 LINE L2 -4 3309 3289 2154 131 3 3 chr12 118482763 118483061 -25303394 + AluSx SINE Alu 1 298 -14 608 317 121 16 chr12 118483061 118483712 -25302743 - L2 LINE L2 -24 3289 2560 363 348 13 13 chr12 118483767 118483922 -25302533 - MIR SINE MIR -106 156 2 193 279 198 0 chr12 118483978 118484064 -25302391 - MIR SINE MIR -112 150 48 218 261 14 0 chr12 118484251 118484320 -25302135 + (TG)n Simple_repeat Simple_repeat 2 71 0 298 221 8 8 chr12 118484339 118484466 -25301989 + (TG)n Simple_repeat Simple_repeat 2 128 0 202 306 0 0 chr12 118486176 118486225 -25300230 + MIR SINE MIR 204 252 -10 321 290 35 19 chr12 118486394 118486556 -25299899 + MIR3 SINE MIR 6 165 -64 303 211 113 0 chr12 118486630 118486701 -25299754 + L2 LINE L2 3194 3272 0 952 255 138 73 chr12 118487140 118487520 -25298935 - L2 LINE L2 0 3313 2959 2342 115 0 0 chr12 118487520 118487825 -25298630 + AluSx SINE Alu 1 305 -7 2085 154 3 3 chr12 118487833 118488145 -25298310 + AluJb SINE Alu 1 312 0 952 255 138 73 chr12 118488145 118488455 -25298000 - L2 LINE L2 -360 2953 2544 272 317 57 24 chr12 118488685 118488808 -25297647 - MIR SINE MIR -120 142 16 190 279 105 58 chr12 118488892 118488978 -25297477 + L2 LINE L2 3115 3204 -68 198 167 0 0 chr12 118489002 118489038 -25297417 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 207 374 0 12 chr12 118489130 118489213 -25297242 + MIR SINE MIR 35 116 -92 330 208 52 26 chr12 118490032 118490109 -25296346 - L2 LINE L2 -6 3307 3229 383 249 107 68 chr12 118490189 118490366 -25296089 - MIR SINE MIR -36 226 43 180 297 16 16 chr12 118490381 118490445 -25296010 + L2 LINE L2 2891 2954 -318 432 281 275 0 chr12 118490445 118490612 -25295843 - L2 LINE L2 0 3313 3101 1700 184 14 0 chr12 118490636 118490913 -25295542 + AluJo SINE Alu 13 293 -19 411 291 93 69 chr12 118490918 118491251 -25295204 + L2 LINE L2 2930 3270 -2 442 273 13 0 chr12 118491342 118491654 -25294801 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 243 255 0 0 chr12 118492001 118492052 -25294403 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 328 360 46 13 chr12 118492387 118492626 -25293829 - L2 LINE L2 -182 3090 2844 215 227 72 11 chr12 118493122 118493216 -25293239 + MIR SINE MIR 58 163 -45 402 312 88 14 chr12 118493219 118493434 -25293021 - MER113 DNA MER1_type? -3 518 288 344 308 24 47 chr12 118493563 118493732 -25292723 + L1ME3 LINE L1 5921 6085 -77 1516 137 22 4 chr12 118493746 118493972 -25292483 + AluJb SINE Alu 61 290 -22 227 343 19 0 chr12 118494045 118494150 -25292305 - MER113 DNA MER1_type? -414 107 1 2079 138 3 16 chr12 118495082 118495386 -25291069 + AluJb SINE Alu 1 300 -12 305 214 14 0 chr12 118495625 118495695 -25290760 + MIR SINE MIR 188 258 -4 2449 74 0 7 chr12 118496174 118496473 -25289982 + AluY SINE Alu 1 297 -14 1519 122 185 0 chr12 118496977 118497215 -25289240 - AluJo SINE Alu -30 282 1 186 189 0 0 chr12 118498723 118498760 -25287695 + T-rich Low_complexity Low_complexity 1 37 0 585 273 25 12 chr12 118500790 118500951 -25285504 + MIR3 SINE MIR 35 197 -11 317 323 128 12 chr12 118500981 118501238 -25285217 + MER102a DNA MER1_type 40 326 -4 369 262 79 16 chr12 118502157 118502283 -25284172 - MER103 DNA DNA -2 164 31 1895 168 0 7 chr12 118502809 118503107 -25283348 + AluJb SINE Alu 8 303 -9 336 303 25 8 chr12 118503120 118503239 -25283216 + MIR3 SINE MIR 85 205 -3 390 271 28 57 chr12 118504095 118504272 -25282183 + MIR SINE MIR 59 230 -32 874 215 20 85 chr12 118504288 118504440 -25282015 + MIR SINE MIR 16 147 -115 2310 100 0 0 chr12 118504440 118504729 -25281726 + AluSx SINE Alu 9 297 -15 874 215 20 85 chr12 118504729 118504823 -25281632 + MIR SINE MIR 147 246 -16 465 276 110 26 chr12 118505041 118505195 -25281260 + MIR SINE MIR 8 188 -74 1860 149 0 90 chr12 118505195 118505538 -25280917 + AluJo SINE Alu 1 312 0 465 276 110 26 chr12 118505538 118505611 -25280844 + MIR SINE MIR 188 254 -8 216 67 0 0 chr12 118506357 118506387 -25280068 + (TG)n Simple_repeat Simple_repeat 1 30 0 381 258 93 20 chr12 118507146 118507297 -25279158 + MIR3 SINE MIR 35 196 -12 256 321 36 12 chr12 118507478 118507562 -25278893 - L2 LINE L2 0 3272 3187 273 304 49 20 chr12 118507675 118507777 -25278678 - L2 LINE L2 -5 3267 3163 509 256 108 11 chr12 118507943 118508207 -25278248 + MLT1H1 LTR MaLR 19 264 -291 294 115 39 0 chr12 118508287 118508339 -25278116 + MLT1H1 LTR MaLR 365 418 -149 263 292 111 42 chr12 118508342 118508486 -25277969 + L2 LINE L2 2908 3061 -252 558 237 15 0 chr12 118508568 118508699 -25277756 - L2 LINE L2 -513 2801 2669 189 0 0 0 chr12 118509087 118509108 -25277347 + (T)n Simple_repeat Simple_repeat 1 21 0 742 296 12 33 chr12 118509363 118509470 -25276985 + MIR SINE MIR 28 136 -126 1491 147 9 0 chr12 118509470 118509694 -25276761 - AluJb SINE Alu -4 308 83 742 296 12 33 chr12 118509694 118509826 -25276629 + MIR SINE MIR 136 262 0 192 297 27 0 chr12 118509859 118509933 -25276522 - MIR SINE MIR -74 188 113 401 228 17 23 chr12 118510024 118510156 -25276299 - MIR SINE MIR -67 141 54 187 318 0 0 chr12 118510406 118510450 -25276005 + L2 LINE L2 3252 3295 -18 1956 110 0 0 chr12 118510559 118510814 -25275641 - AluSx SINE Alu -57 255 1 293 329 0 0 chr12 118511672 118511754 -25274701 - L2 LINE L2 0 3313 3232 261 200 314 0 chr12 118511908 118512013 -25274442 + MIR SINE MIR 48 185 -77 273 361 35 35 chr12 118512388 118512532 -25273923 - L2 LINE L2 -5 3267 3124 322 274 89 7 chr12 118512618 118512753 -25273702 - L2 LINE L2 0 3272 3127 593 235 27 20 chr12 118512777 118512856 -25273599 + MIR SINE MIR 1 83 -179 487 238 57 97 chr12 118512856 118513006 -25273449 + MER8 DNA MER2_type 2 140 -99 2200 115 0 0 chr12 118513006 118513294 -25273161 - AluSx SINE Alu -24 288 1 487 238 57 97 chr12 118513294 118513391 -25273064 + MER8 DNA MER2_type 140 239 0 593 235 27 20 chr12 118513391 118513460 -25272995 + MIR SINE MIR 83 150 -112 305 267 20 10 chr12 118513539 118513640 -25272815 + MIR SINE MIR 137 238 -24 215 301 126 0 chr12 118513996 118514099 -25272356 - MIR3 SINE MIR -78 130 15 1252 184 161 11 chr12 118514190 118514309 -25272146 + AluJo SINE Alu 1 101 -211 1914 167 24 0 chr12 118514309 118514603 -25271852 + AluJb SINE Alu 1 301 -11 1252 184 161 11 chr12 118514603 118514744 -25271711 + AluJo SINE Alu 101 300 -12 216 238 0 0 chr12 118514747 118514810 -25271645 + G-rich Low_complexity Low_complexity 2 64 0 431 244 128 6 chr12 118514936 118515092 -25271363 + MER5A DNA MER1_type 14 188 -1 500 239 98 6 chr12 118515105 118515268 -25271187 - MER5B DNA MER1_type 0 178 1 1799 188 61 40 chr12 118515315 118515597 -25270858 + MER63B DNA MER1_type 1 296 -766 1942 127 15 9 chr12 118515597 118515936 -25270519 - L1MB3 LINE L1 -2 6181 5841 1799 188 61 40 chr12 118515936 118516078 -25270377 + MER63B DNA MER1_type 296 434 -2 344 192 205 0 chr12 118516132 118516210 -25270245 + MER58A DNA MER1_type 1 94 -13 * 488 206 160 36 chr12 118516202 118516396 -25270059 - MER2 DNA MER2_type -7 338 121 1597 118 0 0 chr12 118516396 118516600 -25269855 + AluSc SINE Alu 1 204 -105 630 62 0 0 chr12 118516703 118516784 -25269671 + AluSc SINE Alu 208 288 -21 1774 159 54 7 chr12 118516804 118517099 -25269356 + AluJo SINE Alu 1 309 -3 838 159 0 0 chr12 118517099 118517231 -25269224 - MER2 DNA MER2_type -213 132 1 262 239 104 0 chr12 118517240 118517307 -25269148 + MER58A DNA MER1_type 151 224 0 609 277 113 62 chr12 118517367 118517703 -25268752 - L2 LINE L2 0 3272 2920 260 231 121 11 chr12 118518287 118518378 -25268077 - MIR SINE MIR -122 140 40 627 270 41 36 chr12 118518431 118518735 -25267720 - MLT1J2 LTR MaLR -84 366 4 431 291 91 66 chr12 118519190 118519283 -25267172 + MIR SINE MIR 13 102 -160 2227 137 0 0 chr12 118519283 118519589 -25266866 - AluSx SINE Alu -6 306 1 431 291 91 66 chr12 118519589 118519736 -25266719 + MIR SINE MIR 102 259 -3 2308 119 0 0 chr12 118520011 118520306 -25266149 + AluSg SINE Alu 1 295 -15 579 259 112 16 chr12 118520548 118520757 -25265698 + MIR SINE MIR 33 261 -1 356 346 8 0 chr12 118520897 118521024 -25265431 - MIR SINE MIR -25 237 110 2067 152 3 10 chr12 118521438 118521747 -25264708 + AluJb SINE Alu 1 307 -5 362 313 75 25 chr12 118521855 118522015 -25264440 + L2 LINE L2 2924 3091 -181 516 293 148 41 chr12 118522124 118522433 -25264022 + L2 LINE L2 2646 2920 -393 1035 158 84 0 chr12 118522433 118522635 -25263820 - MER20 DNA MER1_type 0 219 1 516 293 148 41 chr12 118522635 118522927 -25263528 + L2 LINE L2 2920 3310 -3 1059 226 8 16 chr12 118522950 118523193 -25263262 - MIR SINE MIR -11 251 11 315 143 191 0 chr12 118523182 118523245 -25263210 - L2 LINE L2 -10 3303 3229 * 2065 159 0 0 chr12 118523333 118523635 -25262820 + AluSx SINE Alu 1 302 -10 287 238 25 12 chr12 118523638 118523718 -25262737 - MIR SINE MIR -118 144 64 588 264 43 0 chr12 118524624 118524764 -25261691 - MIR SINE MIR -71 191 46 1784 148 92 44 chr12 118525553 118525965 -25260490 - MSTB1 LTR MaLR 0 432 1 328 157 200 0 chr12 118526591 118526661 -25259794 - L2 LINE L2 -1 3312 3229 389 280 131 12 chr12 118526704 118526872 -25259583 - MIR SINE MIR -13 249 62 849 222 134 0 chr12 118526885 118527079 -25259376 + MER58A DNA MER1_type 1 220 -4 2077 103 0 0 chr12 118527102 118527363 -25259092 + AluSx SINE Alu 1 261 -51 2500 67 0 0 chr12 118527364 118527410 -25259045 - L1PA7 LINE L1 -90 6064 6019 927 261 37 21 chr12 118527410 118527699 -25258756 - L1MA1 LINE L1 -275 6027 5739 798 234 136 27 chr12 118527699 118528067 -25258388 - L1MC5 LINE L1 -32 7929 5698 1441 92 0 0 chr12 118528067 118528241 -25258214 - FRAM SINE Alu -5 171 1 407 227 11 11 chr12 118528256 118528344 -25258111 + MER81 DNA DNA 1 88 -26 323 176 0 0 chr12 118528353 118528404 -25258051 + MER81 DNA DNA 59 109 -5 521 130 110 0 chr12 118528663 118528763 -25257692 - FLAM_C SINE Alu -3 140 30 192 196 107 0 chr12 118529014 118529070 -25257385 + MIR SINE MIR 40 101 -107 681 246 41 0 chr12 118529073 118529244 -25257211 - L1MC5 LINE L1 -531 7430 7253 865 98 0 30 chr12 118529825 118529957 -25256498 + AluJ SINE Alu 2 129 -173 1037 158 13 0 chr12 118530041 118530199 -25256256 + AluJ SINE Alu 132 291 -21 628 260 0 19 chr12 118530604 118530758 -25255697 + MIR SINE MIR 13 163 -99 672 142 35 28 chr12 118530787 118530928 -25255527 - MER63 DNA MER1_type -62 774 7 330 250 0 0 chr12 118530929 118531005 -25255450 + MIR SINE MIR 155 230 -32 472 245 87 54 chr12 118531058 118531242 -25255213 - Charlie8 DNA MER1_type -2221 196 7 351 271 28 9 chr12 118531567 118531674 -25254781 - MIR SINE MIR 0 262 154 2025 115 36 23 chr12 118532467 118532771 -25253684 - AluSx SINE Alu -4 308 1 459 281 96 0 chr12 118533299 118533434 -25253021 - Charlie8 DNA MER1_type -2185 232 85 426 129 0 0 chr12 118533470 118533540 -25252915 - L1ME3 LINE L1 -4 6158 6089 562 253 82 6 chr12 118533768 118533950 -25252505 + MIR SINE MIR 21 216 -46 207 0 0 0 chr12 118533971 118533994 -25252461 + (T)n Simple_repeat Simple_repeat 1 23 0 2378 100 0 25 chr12 118534008 118534328 -25252127 - AluSx SINE Alu 0 312 1 1360 189 17 24 chr12 118534328 118534624 -25251831 - L1MC2 LINE L1 -15 6329 6036 210 91 0 0 chr12 118536431 118536464 -25249991 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1891 126 0 39 chr12 118536481 118536766 -25249689 + AluJo SINE Alu 14 287 -25 589 283 45 0 chr12 118536798 118536996 -25249459 - MIR3 SINE MIR 0 208 2 757 126 0 8 chr12 118537350 118537469 -25248986 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr12 118537469 118537490 -25248965 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 1391 262 112 29 chr12 118537493 118538292 -25248163 + L2 LINE L2 2429 3313 0 193 333 16 0 chr12 118538290 118538353 -25248102 - MIR SINE MIR -13 249 186 * 991 112 0 15 chr12 118538466 118538600 -25247855 - AluSq/x SINE Alu -181 132 1 2132 98 46 0 chr12 118539422 118539707 -25246748 - AluSx SINE Alu -14 298 1 395 271 186 14 chr12 118540144 118540354 -25246101 + MIR SINE MIR 16 261 -1 275 282 67 67 chr12 118540450 118540599 -25245856 - L3 LINE CR1 -7 1570 1422 395 328 0 51 chr12 118541210 118541387 -25245068 + MIR SINE MIR 8 175 -87 703 170 3 42 chr12 118541757 118542072 -25244383 + CT-rich Low_complexity Low_complexity 1 302 0 * 767 111 0 53 chr12 118542044 118542234 -25244221 + (TCC)n Simple_repeat Simple_repeat 1 180 0 528 153 0 42 chr12 118542240 118542384 -25244071 + CT-rich Low_complexity Low_complexity 3 140 0 197 322 67 11 chr12 118542655 118542745 -25243710 - MIR SINE MIR -58 204 110 2451 85 0 0 chr12 118542808 118543102 -25243353 + AluSx SINE Alu 8 301 -11 1045 189 0 0 chr12 118543259 118543423 -25243032 - AluJo/FRAM SINE Alu -15 297 134 1511 180 71 37 chr12 118543423 118543602 -25242853 - AluJo SINE Alu -8 304 110 471 18 0 0 chr12 118543602 118543658 -25242797 + (TG)n Simple_repeat Simple_repeat 1 56 0 1511 180 71 37 chr12 118543658 118543772 -25242683 - AluJo SINE Alu -202 110 1 966 220 14 5 chr12 118543835 118544053 -25242402 - MER58A DNA MER1_type 0 224 5 296 235 12 0 chr12 118544068 118544149 -25242306 - MER33 DNA MER1_type 0 324 243 415 141 4 3 chr12 118544152 118544386 -25242069 + AluSx SINE Alu 1 304 -8 944 164 27 86 chr12 118544388 118544486 -25241969 - MER33 DNA MER1_type -2340 245 143 1850 107 12 4 chr12 118544486 118544738 -25241717 + AluSx SINE Alu 37 290 -22 944 164 27 86 chr12 118544738 118544754 -25241701 - MER33 DNA MER1_type -2442 143 128 2552 61 0 0 chr12 118544754 118545049 -25241406 + AluY SINE Alu 2 296 -15 944 164 27 86 chr12 118545049 118545189 -25241266 - MER33 DNA MER1_type -2457 128 5 458 291 91 24 chr12 118545720 118545930 -25240525 + MIR SINE MIR 39 262 0 287 193 0 0 chr12 118546033 118546090 -25240365 - Alu SINE Alu -5 297 241 2059 119 0 14 chr12 118546189 118546495 -25239960 + AluSx SINE Alu 1 302 0 525 231 50 8 chr12 118546742 118546863 -25239592 + L2 LINE L2 3145 3270 -2 2153 144 0 0 chr12 118546950 118547249 -25239206 - AluJo SINE Alu -13 299 1 688 253 94 10 chr12 118547500 118547702 -25238753 - MIR SINE MIR -28 234 16 583 145 89 16 chr12 118547761 118547885 -25238570 + FLAM_C SINE Alu 1 133 0 1851 119 7 70 chr12 118547894 118548230 -25238225 + AluSx SINE Alu 1 317 0 511 241 122 69 chr12 118548809 118548909 -25237546 + L1ME3A LINE L1 5854 5947 -223 1950 189 24 28 chr12 118548909 118549023 -25237432 + L1MB5 LINE L1 5717 5830 -344 2018 112 7 49 chr12 118549023 118549328 -25237127 + AluSx SINE Alu 1 292 -20 1950 189 24 28 chr12 118549328 118549673 -25236782 + L1MB5 LINE L1 5830 6174 0 511 241 122 69 chr12 118549673 118549834 -25236621 + L1ME3A LINE L1 5947 6129 -41 2280 92 0 3 chr12 118549862 118550213 -25236242 - AluSx SINE Alu 0 350 1 208 298 18 0 chr12 118550250 118550307 -25236148 - MIR SINE MIR -58 150 93 1426 223 57 37 chr12 118550590 118550764 -25235691 + MLT1C LTR MaLR 1 170 -297 2131 112 20 3 chr12 118550764 118551060 -25235395 + AluSx SINE Alu 1 301 -11 1426 223 57 37 chr12 118551060 118551343 -25235112 + MLT1C LTR MaLR 170 467 0 374 144 0 0 chr12 118551411 118551484 -25234971 + MER5A DNA MER1_type 4 76 -113 2082 141 6 6 chr12 118551484 118551796 -25234659 + AluJb SINE Alu 1 312 0 267 247 247 0 chr12 118551815 118551912 -25234543 + MER5A DNA MER1_type 61 181 -8 197 186 0 0 chr12 118551998 118552041 -25234414 - MIR SINE MIR -139 123 81 758 253 91 12 chr12 118552134 118552375 -25234080 - MLT1C LTR MaLR -4 463 204 1322 161 127 21 chr12 118552431 118552667 -25233788 - AluJo SINE Alu -51 261 1 448 157 78 20 chr12 118552668 118552770 -25233685 - MLT1C LTR MaLR -316 189 82 1101 153 6 11 chr12 118552782 118552959 -25233496 - AluJb SINE Alu -1 311 136 229 164 0 82 chr12 118552980 118553041 -25233414 - MLT1C LTR MaLR -563 63 8 434 312 29 7 chr12 118553560 118553698 -25232757 + MIR SINE MIR 47 187 -75 203 175 100 0 chr12 118553824 118553864 -25232591 + L2 LINE L2 3262 3305 -8 513 211 15 45 chr12 118553960 118554093 -25232362 - L2 LINE L2 -2 3311 3183 446 323 32 5 chr12 118555419 118555605 -25230850 + MIR SINE MIR 21 211 -51 325 326 186 3 chr12 118555793 118556121 -25230334 - L1ME4a LINE L1 0 6121 5734 458 293 16 69 chr12 118556241 118556521 -25229934 - L1ME4a LINE L1 -720 5442 5174 2185 117 3 0 chr12 118557029 118557332 -25229123 - AluSx SINE Alu 0 306 3 582 298 10 29 chr12 118557806 118558011 -25228444 - MIR SINE MIR -12 250 50 307 281 83 33 chr12 118558352 118558473 -25227982 + MIR SINE MIR 102 228 -34 459 263 44 0 chr12 118558489 118558603 -25227852 - L2 LINE L2 -4 3268 3150 1007 108 16 0 chr12 118558669 118558798 -25227657 - AluSq/x SINE Alu -180 133 3 563 306 65 20 chr12 118558828 118559027 -25227428 + MIR SINE MIR 49 256 -6 204 67 0 0 chr12 118559522 118559552 -25226903 + (A)n Simple_repeat Simple_repeat 1 30 0 846 261 21 93 chr12 118560355 118560643 -25225812 - MER113 DNA MER1_type? -154 367 113 1918 154 0 16 chr12 118560643 118560948 -25225507 + AluJo SINE Alu 3 302 -10 846 261 21 93 chr12 118560948 118561046 -25225409 - MER113 DNA MER1_type? -408 113 9 431 262 24 36 chr12 118561067 118561188 -25225267 + MIR SINE MIR 46 166 -96 2317 80 20 7 chr12 118561188 118561517 -25224938 - AluSg SINE Alu 0 310 1 431 262 24 36 chr12 118561517 118561563 -25224892 + MIR SINE MIR 166 211 -51 379 331 30 0 chr12 118562174 118562307 -25224148 + L2 LINE L2 3136 3272 0 1258 185 4 46 chr12 118562359 118562619 -25223836 - MLT1D LTR MaLR -4 501 253 396 144 67 115 chr12 118562660 118562705 -25223750 - MLT1D LTR MaLR -406 99 53 2083 128 3 16 chr12 118562705 118563010 -25223445 + AluJb SINE Alu 1 301 -11 396 144 67 115 chr12 118563010 118563068 -25223387 - MLT1D LTR MaLR -452 53 1 183 182 0 0 chr12 118563158 118563191 -25223264 - MIR SINE MIR -3 259 227 1375 200 93 27 chr12 118563937 118564112 -25222343 + MLT1C LTR MaLR 1 163 -304 784 241 0 0 chr12 118564112 118564270 -25222185 + FRAM SINE Alu 1 158 -8 2388 94 0 0 chr12 118564272 118564571 -25221884 + AluSc SINE Alu 1 299 -10 2157 133 0 16 chr12 118564572 118564880 -25221575 + AluSx SINE Alu 1 303 -9 1375 200 93 27 chr12 118564880 118565064 -25221391 + MLT1C LTR MaLR 162 389 -78 1591 237 67 7 chr12 118565074 118565504 -25220951 - MLT1C LTR MaLR -6 461 6 359 287 144 6 chr12 118565538 118565712 -25220743 + L2 LINE L2 2538 2735 -579 183 437 0 0 chr12 118566072 118566143 -25220312 + L2 LINE L2 3180 3250 -63 274 276 35 0 chr12 118566256 118566343 -25220112 - MIR SINE MIR -73 189 100 781 242 90 0 chr12 118566343 118566566 -25219889 - LTR16B LTR ERVL -8 456 214 2492 70 0 3 chr12 118566610 118566908 -25219547 + AluY SINE Alu 1 297 -14 2312 112 3 0 chr12 118566915 118567220 -25219235 + AluSq SINE Alu 1 306 -7 745 258 0 0 chr12 118567223 118567386 -25219069 - MLT1B LTR MaLR -35 355 193 2271 103 0 20 chr12 118567501 118567801 -25218654 + AluSx SINE Alu 1 294 -18 432 266 122 51 chr12 118568040 118568254 -25218201 - MIR SINE MIR 0 262 34 1019 119 8 0 chr12 118568306 118568440 -25218015 - AluSq/x SINE Alu -178 135 1 596 269 108 0 chr12 118568484 118568670 -25217785 + LTR16B LTR ERVL 214 419 -45 185 291 18 0 chr12 118568848 118568903 -25217552 - MIR SINE MIR -147 115 60 780 276 40 9 chr12 118569068 118569293 -25217162 - MIR SINE MIR -14 248 17 306 195 24 61 chr12 118569744 118569826 -25216629 - LTR67 LTR ERVL 0 557 479 352 295 39 16 chr12 118570227 118570356 -25216099 + MIR SINE MIR 81 212 -50 292 291 149 0 chr12 118570794 118570935 -25215520 - MIR SINE MIR -9 253 92 813 163 15 7 chr12 118571025 118571160 -25215295 + AluJo SINE Alu 2 137 -175 1893 150 13 0 chr12 118571161 118571461 -25214994 + AluSx SINE Alu 1 304 -8 448 305 102 61 chr12 118572504 118572848 -25213607 - L2 LINE L2 -62 3210 2853 366 280 193 34 chr12 118572855 118573062 -25213393 - MIR SINE MIR -15 247 8 1995 141 0 13 chr12 118573115 118573251 -25213204 + AluSx SINE Alu 1 137 -175 1964 126 44 0 chr12 118573251 118573544 -25212911 + AluSx SINE Alu 1 306 -6 1995 141 0 13 chr12 118573544 118573720 -25212735 + AluSx SINE Alu 137 309 -3 321 216 160 21 chr12 118573898 118574024 -25212431 + MIR SINE MIR 41 184 -65 714 123 9 9 chr12 118574739 118574845 -25211610 + AluJb SINE Alu 87 192 -120 1658 166 3 24 chr12 118574849 118574999 -25211456 - AluJb SINE Alu -28 284 141 2082 122 3 0 chr12 118574999 118575295 -25211160 - AluSx SINE Alu -13 299 3 1658 166 3 24 chr12 118575295 118575434 -25211021 - AluJb SINE Alu -171 141 1 2268 94 0 7 chr12 118575438 118575735 -25210720 - AluSx SINE Alu -17 295 1 311 359 15 0 chr12 118576272 118576403 -25210052 - L2 LINE L2 -48 3265 3133 2079 183 121 48 chr12 118576590 118576880 -25209575 + L1MB5 LINE L1 5570 5837 -337 2183 116 0 0 chr12 118576880 118577181 -25209274 + AluSg SINE Alu 1 301 -9 2079 183 121 48 chr12 118577181 118577411 -25209044 + L1MB5 LINE L1 5837 6136 -38 2137 103 3 19 chr12 118577411 118577723 -25208732 + AluSx SINE Alu 1 307 -5 2079 183 121 48 chr12 118577723 118577764 -25208691 + L1MB5 LINE L1 6136 6173 -1 204 200 0 0 chr12 118578138 118578178 -25208277 + GA-rich Low_complexity Low_complexity 4 43 0 339 280 50 3 chr12 118578276 118578395 -25208060 + MIR SINE MIR 28 146 -62 360 282 8 43 chr12 118578409 118578526 -25207929 - MLT2D LTR ERVL -8 406 294 24 32 0 0 chr12 118578542 118578573 -25207882 + AT_rich Low_complexity Low_complexity 1 31 0 451 179 0 0 chr12 118578574 118578641 -25207814 - AluJ/FRAM SINE Alu -25 287 221 1558 140 17 53 chr12 118578641 118578722 -25207733 + AluJo SINE Alu 21 103 -209 1784 116 0 0 chr12 118578722 118578964 -25207491 - AluSx SINE Alu -57 255 14 1558 140 17 53 chr12 118578964 118579182 -25207273 + AluJo SINE Alu 103 309 -3 2180 109 0 3 chr12 118579184 118579488 -25206967 + AluSx SINE Alu 1 303 -9 312 250 13 0 chr12 118579573 118579649 -25206806 - MIR SINE MIR -80 182 106 803 160 0 8 chr12 118580204 118580320 -25206135 + FLAM_C SINE Alu 1 117 -185 261 0 0 0 chr12 118580320 118580349 -25206106 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 468 303 70 0 chr12 118580414 118580556 -25205899 - Charlie8 DNA MER1_type -2152 265 114 390 299 80 85 chr12 118582215 118582617 -25203838 - L2 LINE L2 -2 3311 2912 216 313 36 83 chr12 118583318 118583510 -25202945 - L2 LINE L2 -91 3181 2999 1171 124 0 50 chr12 118584467 118584668 -25201787 - AluJb SINE Alu -32 280 90 1784 159 0 14 chr12 118584693 118584989 -25201466 - AluJb SINE Alu -20 292 1 406 265 61 20 chr12 118585002 118585149 -25201306 - L1MC4a LINE L1 -1886 5922 5770 865 182 59 0 chr12 118585152 118585322 -25201133 - MER58A DNA MER1_type 0 224 45 1907 141 0 3 chr12 118585336 118585626 -25200829 + AluJo SINE Alu 13 301 -11 312 266 152 13 chr12 118585736 118585894 -25200561 + LTR68 LTR ERV1 1 180 -560 1351 153 106 22 chr12 118586084 118586359 -25200096 - AluJo SINE Alu -14 298 1 666 273 35 43 chr12 118586884 118587115 -25199340 - MIR SINE MIR -5 257 29 2105 134 0 3 chr12 118587185 118587498 -25198957 + AluSx SINE Alu 1 312 0 1944 155 0 0 chr12 118587508 118587817 -25198638 + AluJb SINE Alu 1 309 -3 292 274 26 35 chr12 118587846 118587923 -25198532 - MIR SINE MIR -62 200 123 2205 113 0 3 chr12 118587923 118588234 -25198221 + AluSx SINE Alu 1 310 -2 292 274 26 35 chr12 118588234 118588269 -25198186 - MIR SINE MIR -139 123 89 570 232 62 51 chr12 118590014 118590119 -25196336 + MIR SINE MIR 84 193 -69 871 165 0 0 chr12 118590119 118590246 -25196209 + FLAM_A SINE Alu 1 127 -6 570 232 62 51 chr12 118590246 118590317 -25196138 + MIR SINE MIR 193 262 0 270 267 7 27 chr12 118590396 118590546 -25195909 + (TG)n Simple_repeat Simple_repeat 2 148 0 338 200 24 64 chr12 118591271 118591396 -25195059 - L1ME3A LINE L1 0 6170 6051 1728 138 3 30 chr12 118591976 118592281 -25194174 + AluJb SINE Alu 1 297 -15 1588 105 70 0 chr12 118592322 118592550 -25193905 + AluSx SINE Alu 53 296 -16 2207 100 0 0 chr12 118593483 118593774 -25192681 - AluSx SINE Alu -21 291 1 271 333 88 0 chr12 118593783 118593897 -25192558 + MIR SINE MIR 72 195 -67 191 81 54 0 chr12 118594207 118594244 -25192211 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 471 172 0 23 chr12 118594290 118594555 -25191900 + CT-rich Low_complexity Low_complexity 1 258 0 225 0 0 0 chr12 118594575 118594600 -25191855 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 478 199 17 15 chr12 118595299 118595435 -25191020 + MIR SINE MIR 23 151 -58 387 303 206 6 chr12 118595652 118595827 -25190628 + MIR SINE MIR 45 254 -8 1980 143 0 3 chr12 118595860 118596154 -25190301 - AluSx SINE Alu -15 297 5 2148 125 3 0 chr12 118596156 118596467 -25189988 - AluSx SINE Alu 0 312 1 2192 107 3 0 chr12 118596988 118597286 -25189169 + AluSx SINE Alu 1 299 -13 293 198 12 37 chr12 118597406 118597487 -25188968 + L2 LINE L2 2965 3043 -229 600 196 30 83 chr12 118597551 118597640 -25188815 + MIR SINE MIR 34 126 -136 1926 111 0 30 chr12 118597640 118597937 -25188518 - AluSg SINE Alu -21 289 2 600 196 30 83 chr12 118597937 118597963 -25188492 + MIR SINE MIR 126 152 -110 1878 98 0 8 chr12 118597963 118598229 -25188226 + AluSq SINE Alu 37 300 -13 600 196 30 83 chr12 118598229 118598280 -25188175 + MIR SINE MIR 152 192 -70 906 121 0 0 chr12 118598705 118598837 -25187618 - AluSq/x SINE Alu -180 132 1 316 122 0 0 chr12 118598908 118598957 -25187498 + Alu SINE Alu 247 295 -7 465 300 18 13 chr12 118599222 118599447 -25187008 + MIR SINE MIR 21 246 -16 2256 65 3 33 chr12 118599463 118599770 -25186685 - AluY SINE Alu -13 298 1 2192 96 3 6 chr12 118599974 118600287 -25186168 + AluSx SINE Alu 1 312 0 2015 129 3 10 chr12 118600397 118600707 -25185748 - AluSg SINE Alu -2 308 1 1374 163 83 35 chr12 118600713 118601001 -25185454 - AluJo SINE Alu -10 302 1 1434 157 111 4 chr12 118601004 118601266 -25185189 - AluJo SINE Alu -22 290 1 270 272 12 12 chr12 118601787 118601868 -25184587 + MER117 DNA MER1_type 56 136 -61 1929 124 13 26 chr12 118602431 118602738 -25183717 - AluSx SINE Alu -7 305 3 183 42 0 0 chr12 118602738 118602762 -25183693 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 223 229 14 14 chr12 118602882 118602952 -25183503 + L2 LINE L2 3030 3099 -173 1088 161 58 31 chr12 118603064 118603288 -25183167 - AluJo SINE Alu -6 306 77 1995 130 0 10 chr12 118603290 118603589 -25182866 - AluSc SINE Alu -13 296 1 982 95 0 7 chr12 118603589 118603726 -25182729 - AluJb SINE Alu -176 136 1 365 322 22 33 chr12 118604823 118605003 -25181452 + L1ME4a LINE L1 5694 5871 -250 1725 150 25 0 chr12 118605024 118605318 -25181137 - AluSx SINE Alu 0 301 1 23 33 0 0 chr12 118605415 118605445 -25181010 + AT_rich Low_complexity Low_complexity 1 30 0 1440 186 113 15 chr12 118605469 118605743 -25180712 - AluJb SINE Alu -1 301 1 294 189 50 119 chr12 118605767 118605810 -25180645 + L1ME3A LINE L1 5739 5783 -387 1424 188 65 4 chr12 118605810 118606087 -25180368 + AluJo SINE Alu 1 294 -18 294 189 50 119 chr12 118606087 118606160 -25180295 + L1ME3A LINE L1 5783 5844 -326 1002 164 0 34 chr12 118606160 118606337 -25180118 - FAM SINE Alu -1 174 4 294 189 50 119 chr12 118606337 118606378 -25180077 + L1ME3A LINE L1 5844 5886 -284 1459 146 46 99 chr12 118606385 118606725 -25179730 + AluJb SINE Alu 1 324 0 2100 114 7 13 chr12 118606753 118607061 -25179394 - AluSx SINE Alu -6 306 1 195 100 0 0 chr12 118607305 118607335 -25179120 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 180 279 0 0 chr12 118607335 118607396 -25179059 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1827 202 22 34 chr12 118607660 118608025 -25178430 + L1MB5 LINE L1 5769 6137 -37 2254 92 7 7 chr12 118608025 118608328 -25178127 + AluSx SINE Alu 1 303 -9 2158 86 10 23 chr12 118608330 118608632 -25177823 + AluSp SINE Alu 2 299 -14 1827 202 22 34 chr12 118608632 118608674 -25177781 + L1MB5 LINE L1 6138 6174 0 550 281 142 67 chr12 118608704 118608903 -25177552 - L1ME4a LINE L1 -47 6074 5891 854 181 0 0 chr12 118608903 118609036 -25177419 - FLAM_A SINE Alu 0 133 1 2072 120 0 7 chr12 118609040 118609340 -25177115 - AluSx SINE Alu -14 298 1 550 281 142 67 chr12 118609340 118609551 -25176904 - L1ME4a LINE L1 -232 5889 5628 1202 170 10 0 chr12 118609906 118610106 -25176349 - AluSg/x SINE Alu -3 309 108 1938 101 4 0 chr12 118610106 118610374 -25176081 - AluSq SINE Alu -2 311 43 551 55 27 0 chr12 118610405 118610478 -25175977 + Alu SINE Alu 3 77 -233 186 320 0 0 chr12 118610559 118610609 -25175846 + L2 LINE L2 3223 3272 0 2157 114 3 0 chr12 118611114 118611413 -25175042 - AluSq SINE Alu -13 300 1 316 122 0 0 chr12 118612232 118612281 -25174174 - Alu SINE Alu -7 295 247 1979 114 4 0 chr12 118612352 118612656 -25173799 + AluSx SINE Alu 1 305 0 2040 199 92 23 chr12 118612658 118613315 -25173140 - L1MB7 LINE L1 -32 6152 5396 1583 170 20 23 chr12 118613505 118613805 -25172650 + AluJb SINE Alu 1 299 -13 360 0 0 0 chr12 118614311 118614351 -25172104 + (TG)n Simple_repeat Simple_repeat 1 40 0 1849 109 49 4 chr12 118614351 118614618 -25171837 - AluSx SINE Alu -33 279 1 565 186 7 7 chr12 118614672 118614817 -25171638 + CT-rich Low_complexity Low_complexity 2 146 0 466 274 0 0 chr12 118614860 118614962 -25171493 + MER81 DNA DNA 12 113 -1 2088 120 0 13 chr12 118615351 118615667 -25170788 - AluSx SINE Alu 0 312 1 189 301 68 0 chr12 118616031 118616104 -25170351 - L2 LINE L2 -54 3259 3182 * 652 306 16 0 chr12 118616092 118616275 -25170180 + MIR SINE MIR 12 197 -65 807 136 0 0 chr12 118616282 118616400 -25170055 + AluJ SINE Alu 1 118 -194 885 19 0 0 chr12 118616407 118616510 -25169945 + (TA)n Simple_repeat Simple_repeat 2 104 0 193 361 55 33 chr12 118616700 118616883 -25169572 - L2 LINE L2 -232 3040 2854 185 277 0 0 chr12 118616937 118616984 -25169471 - L2 LINE L2 -556 2758 2712 390 278 0 0 chr12 118617076 118617166 -25169289 + MER91B DNA MER1_type 68 157 -33 200 314 42 85 chr12 118617365 118617483 -25168972 - MIR SINE MIR -66 196 84 919 183 0 18 chr12 118617541 118617555 -25168900 + AluJ SINE Alu 121 134 -178 1883 127 0 45 chr12 118617555 118617863 -25168592 + AluSx SINE Alu 1 294 -18 919 183 0 18 chr12 118617863 118618017 -25168438 + AluJ SINE Alu 134 286 -26 441 245 140 10 chr12 118618058 118618258 -25168197 - L1MC4 LINE L1 -371 7671 7446 1867 93 4 4 chr12 118618364 118618621 -25167834 - AluSx SINE Alu -55 257 1 302 262 30 11 chr12 118618804 118619077 -25167378 - L1MC4 LINE L1 0 8042 7692 1935 120 0 45 chr12 118619114 118619422 -25167033 + AluSx SINE Alu 1 294 -18 914 179 0 0 chr12 118619425 118619576 -25166879 + AluJo/FRAM SINE Alu 136 286 -26 1041 229 96 7 chr12 118619617 118619918 -25166537 - L1MC4 LINE L1 -371 7671 7344 858 77 17 0 chr12 118619918 118620035 -25166420 + AluSg/x SINE Alu 154 272 -40 338 148 0 0 chr12 118620040 118620094 -25166361 - L1MC4a LINE L1 -542 7266 7213 414 107 0 0 chr12 118620095 118620151 -25166304 + Alu SINE Alu 2 57 -261 180 0 0 0 chr12 118620737 118620757 -25165698 + (A)n Simple_repeat Simple_repeat 1 20 0 1893 136 3 16 chr12 118620780 118621089 -25165366 - AluSx SINE Alu -7 305 1 470 274 0 0 chr12 118621387 118621489 -25164966 - MER81 DNA DNA -1 113 12 247 323 39 16 chr12 118671603 118671730 -25114725 - L1MC/D LINE L1 -769 5575 5446 23 0 0 0 chr12 118671872 118671895 -25114560 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 118672191 118672216 -25114239 + GC_rich Low_complexity Low_complexity 1 25 0 1784 158 27 3 chr12 118672703 118673001 -25113454 + AluJo SINE Alu 1 305 -7 1367 229 27 33 chr12 118673001 118673029 -25113426 - L1MC3 LINE L1 -14 7771 7744 1992 142 3 3 chr12 118673029 118673325 -25113130 + AluSx SINE Alu 1 296 -16 1367 229 27 33 chr12 118673325 118673663 -25112792 - L1MC3 LINE L1 -41 7744 7407 1358 140 0 0 chr12 118673859 118674066 -25112389 + AluJb SINE Alu 100 306 -6 386 154 15 0 chr12 118674317 118674382 -25112073 - L2 LINE L2 -1 3312 3247 469 212 76 30 chr12 118674673 118674805 -25111650 - L1ME3 LINE L1 -123 6039 5902 965 188 0 0 chr12 118674809 118674985 -25111470 - AluJb SINE Alu -4 308 133 1817 243 54 41 chr12 118674996 118675072 -25111383 - L1ME3 LINE L1 -266 5898 5824 2082 116 3 25 chr12 118675072 118675391 -25111064 - AluJb SINE Alu 0 312 1 1817 243 54 41 chr12 118675391 118675742 -25110713 - L1ME3 LINE L1 -340 5824 5458 1646 97 0 4 chr12 118675742 118675968 -25110487 - AluSg/x SINE Alu 0 310 86 1817 243 54 41 chr12 118675968 118676172 -25110283 - L1ME3 LINE L1 -706 5458 5258 2315 83 0 3 chr12 118676233 118676534 -25109921 - AluSg SINE Alu -10 300 1 1133 59 0 0 chr12 118676536 118676671 -25109784 - AluSq/x SINE Alu -177 135 1 384 223 3 58 chr12 118676706 118676887 -25109568 - L2 LINE L2 -304 2968 2797 2319 81 0 3 chr12 118677034 118677344 -25109111 - AluY SINE Alu -2 309 1 850 107 33 0 chr12 118677375 118677496 -25108959 + AluSq/x SINE Alu 1 125 -187 2146 108 6 10 chr12 118677506 118677820 -25108635 + AluSq SINE Alu 1 313 0 458 225 60 26 chr12 118677829 118677980 -25108475 + MIR SINE MIR 20 175 -87 445 282 144 16 chr12 118679024 118679347 -25107108 - L2 LINE L2 -165 3107 2727 3212 176 39 45 chr12 118679530 118680061 -25106394 - MER39 LTR ERV1 0 707 179 847 117 15 44 chr12 118680061 118680198 -25106257 - FLAM_C SINE Alu 0 133 1 3212 176 39 45 chr12 118680198 118680377 -25106078 - MER39 LTR ERV1 -528 179 1 307 205 114 74 chr12 118680458 118680604 -25105851 - MIR SINE MIR -63 145 12 361 149 33 165 chr12 118680692 118680778 -25105677 + Charlie8 DNA MER1_type 85 152 -189 2240 119 0 0 chr12 118680778 118681090 -25105365 + AluSx SINE Alu 1 312 0 361 149 33 165 chr12 118681090 118681124 -25105331 + Charlie8 DNA MER1_type 152 189 -152 198 300 43 0 chr12 118681316 118681386 -25105069 + MIR3 SINE MIR 114 186 -22 184 209 0 23 chr12 118681400 118681443 -25105012 + MIR SINE MIR 114 155 -107 643 263 78 5 chr12 118681471 118681676 -25104779 - MIR SINE MIR -6 256 37 252 265 72 0 chr12 118682080 118682163 -25104292 + MIR SINE MIR 58 146 -116 201 256 20 0 chr12 118682475 118682550 -25103905 - MIR SINE MIR -62 146 108 474 18 0 0 chr12 118682690 118682745 -25103710 + (GGA)n Simple_repeat Simple_repeat 2 56 0 298 307 124 7 chr12 118682788 118682941 -25103514 + MIR SINE MIR 60 230 -32 2113 113 0 7 chr12 118682999 118683308 -25103147 - AluSx SINE Alu -5 307 1 539 256 85 6 chr12 118683312 118683488 -25102967 - MIR SINE MIR -14 248 59 359 280 56 8 chr12 118684320 118684445 -25102010 + MIR SINE MIR 51 181 -81 297 255 72 26 chr12 118685113 118685255 -25101200 - L1ME4a LINE L1 0 6121 5970 1507 140 6 100 chr12 118685255 118685584 -25100871 - AluJo SINE Alu -4 298 1 1616 71 33 0 chr12 118685809 118686019 -25100436 - AluSx SINE Alu -95 217 1 418 256 29 22 chr12 118686021 118686158 -25100297 - L1ME4a LINE L1 -385 5736 5599 4247 144 17 62 chr12 118686175 118686744 -25099711 - L1MB7 LINE L1 -13 6171 5578 1996 130 3 0 chr12 118686744 118687036 -25099419 + AluSx SINE Alu 1 293 -19 4247 144 17 62 chr12 118687036 118687228 -25099227 - L1MB7 LINE L1 -606 5578 5450 1554 161 0 90 chr12 118687228 118687437 -25099018 - AluJo SINE Alu -10 302 131 221 0 0 33 chr12 118687437 118687467 -25098988 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1554 161 0 90 chr12 118687467 118687579 -25098876 - AluJo SINE Alu -181 131 10 4247 144 17 62 chr12 118687579 118687676 -25098779 - L1MB7 LINE L1 -734 5450 5350 1049 168 58 0 chr12 118687833 118688041 -25098414 - L1MB7 LINE L1 -20 6164 5945 459 380 87 15 chr12 118688048 118688438 -25098017 - L1ME4a LINE L1 -757 5389 4972 1895 114 21 0 chr12 118689041 118689321 -25097134 - AluSx SINE Alu -16 296 11 418 253 0 0 chr12 118691199 118691286 -25095169 - MIR SINE MIR -89 173 87 197 362 21 28 chr12 118691641 118691782 -25094673 - L2 LINE L2 -111 3161 3022 349 240 260 5 chr12 118692409 118692609 -25093846 - L2 LINE L2 -245 3068 2818 2002 95 7 30 chr12 118692635 118692814 -25093641 - AluSg SINE Alu 0 310 137 2189 107 3 3 chr12 118692814 118693124 -25093331 - AluSp SINE Alu -3 310 1 2002 95 7 30 chr12 118693124 118693258 -25093197 - AluSg SINE Alu -173 137 1 523 173 192 0 chr12 118693263 118693367 -25093088 - FRAM SINE Alu -22 154 31 190 378 22 0 chr12 118693757 118693847 -25092608 - MER5A DNA MER1_type -8 181 90 203 205 0 0 chr12 118694191 118694230 -25092225 + L2 LINE L2 3221 3259 -13 499 148 102 0 chr12 118694689 118694777 -25091678 + FRAM SINE Alu 60 156 -20 1351 128 104 32 chr12 118694803 118695053 -25091402 + AluJo SINE Alu 35 302 -10 204 230 149 0 chr12 118695055 118695129 -25091326 - MIR SINE MIR -79 129 45 319 103 191 15 chr12 118695353 118695421 -25091034 + MER103 DNA DNA 9 88 -78 875 135 0 0 chr12 118695611 118695737 -25090718 - AluSg/x SINE Alu -17 293 168 238 259 71 12 chr12 118695944 118696029 -25090426 - MIR SINE MIR -117 145 56 201 288 68 0 chr12 118696912 118696971 -25089484 - MIR SINE MIR -90 172 110 221 301 92 4 chr12 118697485 118697576 -25088879 - MIR SINE MIR -69 139 49 2175 103 0 13 chr12 118697583 118697894 -25088561 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 118701222 118701247 -25085208 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 2135 98 20 0 chr12 118703601 118703897 -25082558 - AluSq SINE Alu -11 302 1 41 36 0 0 chr12 118705892 118705947 -25080508 + AT_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr12 118706104 118706125 -25080330 + (T)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chr12 118707097 118707121 -25079334 + (CTG)n Simple_repeat Simple_repeat 2 25 0 2314 66 7 3 chr12 118710418 118710722 -25075733 - AluY SINE Alu -6 305 1 1908 98 88 18 chr12 118711817 118712102 -25074353 - AluSx SINE Alu -7 305 1 2167 91 10 0 chr12 118713117 118713414 -25073041 - AluSx SINE Alu -12 300 1 1864 95 77 0 chr12 118713417 118713691 -25072764 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 118713691 118713719 -25072736 + AT_rich Low_complexity Low_complexity 1 28 0 2039 93 35 7 chr12 118713759 118714048 -25072407 - AluSx SINE Alu -15 297 1 2217 87 0 0 chr12 118714862 118715179 -25071276 + AluSq SINE Alu 1 317 0 1885 92 4 11 chr12 118715359 118715620 -25070835 + AluSg1 SINE Alu 45 303 -6 326 329 0 0 chr12 118716634 118716716 -25069739 - L1MC4 LINE L1 -1339 6703 6622 1783 137 63 0 chr12 118716967 118717251 -25069204 - AluSx SINE Alu -10 302 1 2030 133 0 3 chr12 118717468 118717762 -25068693 - AluSx SINE Alu -19 293 1 324 0 0 0 chr12 118717922 118717958 -25068497 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 22 0 0 chr12 118717999 118718045 -25068410 + (TG)n Simple_repeat Simple_repeat 2 47 0 379 224 35 9 chr12 118718904 118719020 -25067435 + L1ME4a LINE L1 5974 6092 -29 2121 118 7 0 chr12 118719164 118719469 -25066986 + AluSg SINE Alu 1 307 -3 2260 93 3 6 chr12 118719559 118719872 -25066583 + AluSx SINE Alu 1 312 0 2275 71 0 10 chr12 118719891 118720186 -25066269 + AluY SINE Alu 1 292 -19 37 23 0 0 chr12 118720564 118720608 -25065847 + AT_rich Low_complexity Low_complexity 1 44 0 1556 164 6 59 chr12 118720805 118721129 -25065326 - AluJo SINE Alu -5 307 1 2368 92 0 3 chr12 118722368 118722674 -25063781 - AluSg SINE Alu -5 305 1 23 0 0 0 chr12 118722731 118722754 -25063701 + AT_rich Low_complexity Low_complexity 1 23 0 245 268 61 0 chr12 118722790 118722872 -25063583 - L1ME LINE L1 -310 5860 5774 252 333 22 54 chr12 118724472 118724718 -25061737 + L2 LINE L2 2781 3078 -194 23 0 0 0 chr12 118725552 118725575 -25060880 + AT_rich Low_complexity Low_complexity 1 23 0 309 210 0 0 chr12 118725595 118725657 -25060798 + MSTB2 LTR MaLR 1 62 -395 1526 203 0 7 chr12 118725657 118725947 -25060508 + AluJb SINE Alu 1 288 -24 240 255 21 83 chr12 118726198 118726235 -25060220 + L1M4 LINE L1 4450 4488 -1658 2061 118 10 26 chr12 118726235 118726548 -25059907 - AluSx SINE Alu -4 308 1 240 255 21 83 chr12 118726548 118726655 -25059800 + L1M4 LINE L1 4488 4585 -1561 1853 166 0 10 chr12 118726665 118726973 -25059482 + AluJb SINE Alu 1 305 -7 1129 169 13 70 chr12 118727010 118727311 -25059144 + L1MC5 LINE L1 6960 7243 -718 579 251 49 27 chr12 118727360 118727583 -25058872 + L1MC5 LINE L1 7215 7442 -519 1541 186 86 0 chr12 118727637 118727917 -25058538 + AluJb SINE Alu 1 304 -8 659 183 0 61 chr12 118727968 118728135 -25058320 + FLAM_C SINE Alu 21 179 0 1029 163 0 6 chr12 118728137 118728297 -25058158 + AluJo/FRAM SINE Alu 141 299 -3 396 211 0 0 chr12 118728308 118728379 -25058076 + L1MC5 LINE L1 7713 7783 -178 1733 104 115 11 chr12 118728476 118728606 -25057849 + AluSg SINE Alu 1 116 -194 2490 51 0 3 chr12 118728606 118728898 -25057557 + AluY SINE Alu 1 291 -20 1733 104 115 11 chr12 118728898 118729036 -25057419 + AluSg SINE Alu 116 297 -13 1118 167 0 6 chr12 118729152 118729332 -25057123 - AluSg/x SINE Alu 0 310 132 1684 189 0 4 chr12 118729647 118729927 -25056528 - AluJo SINE Alu -33 279 1 230 127 79 32 chr12 118729928 118729991 -25056464 + L1ME1 LINE L1 3890 3955 -2191 1755 246 235 14 chr12 118730030 118730735 -25055720 + L1ME1 LINE L1 4021 4569 -1577 2015 121 10 45 chr12 118730735 118731049 -25055406 + AluSq SINE Alu 1 303 -10 1755 246 235 14 chr12 118731049 118731374 -25055081 + L1ME1 LINE L1 4569 5279 -867 1428 160 3 116 chr12 118731431 118731768 -25054687 - AluJb SINE Alu -11 301 3 2011 129 4 0 chr12 118731799 118732078 -25054377 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr12 118732078 118732101 -25054354 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1780 206 41 90 chr12 118732101 118732399 -25054056 + L1ME1 LINE L1 5319 5581 -585 2251 115 0 6 chr12 118732399 118732711 -25053744 + AluSx SINE Alu 1 310 -2 1780 206 41 90 chr12 118732711 118732945 -25053510 + L1ME1 LINE L1 5581 5825 -341 1339 97 0 127 chr12 118732945 118733173 -25053282 + AluSx SINE Alu 1 199 -113 1415 84 139 0 chr12 118733302 118733504 -25052951 - MER30 DNA MER1_type 0 230 1 24 0 0 0 chr12 118733523 118733547 -25052908 + AT_rich Low_complexity Low_complexity 1 24 0 666 148 148 0 chr12 118733552 118733660 -25052795 + FLAM_C SINE Alu 1 124 -9 215 102 0 61 chr12 118733673 118733722 -25052733 + (A)n Simple_repeat Simple_repeat 1 46 0 412 244 110 53 chr12 118733740 118733949 -25052506 + L1ME1 LINE L1 5942 6162 -4 425 94 0 0 chr12 118734047 118734100 -25052355 - AluJ/FLAM SINE Alu -220 92 40 1588 121 58 4 chr12 118734117 118734357 -25052098 + AluSg SINE Alu 49 301 -9 1407 188 20 45 chr12 118734357 118734703 -25051752 + L1M4 LINE L1 4874 5212 -934 955 138 0 0 chr12 118734706 118734836 -25051619 + AluSq/x SINE Alu 5 134 -178 1599 171 48 3 chr12 118734837 118735130 -25051325 + AluJb SINE Alu 1 306 -6 1017 184 191 54 chr12 118735130 118735336 -25051119 + L1M4 LINE L1 5432 5609 -569 2017 123 20 20 chr12 118735336 118735636 -25050819 - AluSx SINE Alu -12 300 1 1017 184 191 54 chr12 118735636 118735744 -25050711 + L1M4 LINE L1 5609 5789 -389 851 132 0 0 chr12 118735744 118735865 -25050590 + AluSq/x SINE Alu 1 121 -192 2440 77 3 0 chr12 118735865 118736165 -25050290 - AluY SINE Alu -8 303 3 1567 165 4 11 chr12 118736613 118736863 -25049592 + AluJb SINE Alu 34 283 -29 438 20 0 0 chr12 118736863 118736914 -25049541 + (CA)n Simple_repeat Simple_repeat 2 52 0 1567 165 4 11 chr12 118736914 118736929 -25049526 + AluJb SINE Alu 283 297 -15 275 23 23 0 chr12 118737128 118737171 -25049284 - AluSx SINE Alu 0 300 257 1125 144 0 0 chr12 118737171 118737331 -25049124 - AluSx SINE Alu -152 160 1 1516 191 14 17 chr12 118737464 118737758 -25048697 - AluJb SINE Alu -19 293 1 593 165 157 9 chr12 118737960 118738075 -25048380 - FLAM_C SINE Alu -1 132 1 2130 94 3 14 chr12 118738085 118738410 -25048045 - AluSx SINE Alu 0 322 1 1759 170 14 3 chr12 118738420 118738702 -25047753 - AluJo SINE Alu -27 285 1 26 0 0 0 chr12 118739791 118739817 -25046638 + AT_rich Low_complexity Low_complexity 1 26 0 1572 179 111 7 chr12 118739852 118740159 -25046296 + MER2 DNA MER2_type 1 339 -6 192 358 30 0 chr12 118740199 118740266 -25046189 - MIR SINE MIR -81 127 59 1693 149 59 28 chr12 118740758 118741047 -25045408 - AluSx SINE Alu -14 298 1 2004 121 7 0 chr12 118741128 118741423 -25045032 - AluSx SINE Alu 0 307 11 239 299 169 13 chr12 118742681 118742758 -25043697 - L2 LINE L2 -16 3256 3168 2405 68 7 0 chr12 118743007 118743301 -25043154 + AluY SINE Alu 1 296 -15 744 198 0 0 chr12 118743314 118743430 -25043025 + FLAM_C SINE Alu 1 116 -27 220 26 26 26 chr12 118743436 118743474 -25042981 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 2048 123 7 26 chr12 118743595 118743905 -25042550 + AluSx SINE Alu 1 304 -8 324 305 23 34 chr12 118743913 118744090 -25042365 - L2 LINE L2 -518 2796 2622 6663 194 63 17 chr12 118744221 118744650 -25041805 + L1MA3 LINE L1 17 425 -7140 1996 126 27 3 chr12 118744650 118744943 -25041512 + AluSp SINE Alu 1 300 -13 6663 194 63 17 chr12 118744943 118746076 -25040379 + L1MA3 LINE L1 425 2023 -5542 2310 108 0 0 chr12 118746076 118746381 -25040074 + AluSg SINE Alu 1 305 -5 6663 194 63 17 chr12 118746381 118746811 -25039644 + L1MA3 LINE L1 2023 2432 -5133 2158 123 3 3 chr12 118746815 118747116 -25039339 + AluSx SINE Alu 5 305 -7 3607 150 25 58 chr12 118747116 118747305 -25039150 + L1MA3 LINE L1 2994 3188 -4377 2202 99 7 3 chr12 118747305 118747598 -25038857 - AluSg SINE Alu -14 296 3 192 40 0 0 chr12 118747598 118747623 -25038832 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2105 100 11 0 chr12 118747623 118747904 -25038551 - AluSx SINE Alu -28 284 1 3607 150 25 58 chr12 118747904 118748100 -25038355 + L1MA3 LINE L1 3186 3387 -4178 2328 101 0 0 chr12 118748100 118748398 -25038057 - AluSg SINE Alu -12 298 1 3607 150 25 58 chr12 118748398 118748698 -25037757 + L1MA3 LINE L1 3387 3695 -3870 2329 95 0 7 chr12 118748698 118749002 -25037453 + AluSq SINE Alu 1 302 -11 3607 150 25 58 chr12 118749002 118749531 -25036924 + L1MA3 LINE L1 3695 4172 -3393 1432 189 3 50 chr12 118749541 118749874 -25036581 + AluJb SINE Alu 6 312 0 12521 166 30 33 chr12 118749874 118749924 -25036531 + L1MA3 LINE L1 4186 4235 -3330 2339 105 0 13 chr12 118749924 118750239 -25036216 + AluSx SINE Alu 1 311 -1 12521 166 30 33 chr12 118750239 118751409 -25035046 + L1MA3 LINE L1 4235 5407 -2158 2465 76 0 0 chr12 118751409 118751711 -25034744 + AluY SINE Alu 1 302 -9 12521 166 30 33 chr12 118751711 118753096 -25033359 + L1MA3 LINE L1 5407 6785 -780 1525 138 119 8 chr12 118753096 118753373 -25033082 + AluSg SINE Alu 1 305 0 795 168 0 0 chr12 118753388 118753501 -25032954 + FLAM_C SINE Alu 2 114 -29 4480 133 19 6 chr12 118753507 118754209 -25032246 + L1MA3 LINE L1 6782 7492 -232 23 42 0 21 chr12 118754238 118754267 -25032188 + AT_rich Low_complexity Low_complexity 1 30 -17 2255 101 0 0 chr12 118754267 118754563 -25031892 + AluSc SINE Alu 1 296 -13 23 42 0 21 chr12 118754563 118754581 -25031874 + AT_rich Low_complexity Low_complexity 30 47 0 1486 159 4 12 chr12 118754581 118754839 -25031616 + L1MA3 LINE L1 7469 7724 0 386 171 45 81 chr12 118755550 118755569 -25030886 - MIR SINE MIR -25 237 219 1657 199 3 3 chr12 118755569 118755866 -25030589 - AluJb SINE Alu -15 297 1 386 171 45 81 chr12 118755866 118755957 -25030498 - MIR SINE MIR -43 219 131 2254 112 0 3 chr12 118756099 118756404 -25030051 - AluSq SINE Alu -8 305 2 543 332 87 9 chr12 118756497 118756726 -25029729 - MIR SINE MIR 0 262 16 523 322 57 0 chr12 118756991 118757168 -25029287 + MIR SINE MIR 62 248 -14 27 0 0 0 chr12 118757221 118757248 -25029207 + AT_rich Low_complexity Low_complexity 1 27 0 2016 130 40 13 chr12 118757263 118757564 -25028891 - AluSx SINE Alu -3 309 1 763 215 5 67 chr12 118757830 118757977 -25028478 + L1MB8 LINE L1 4757 4889 -1257 1824 128 24 24 chr12 118757977 118758267 -25028188 - AluSx SINE Alu -22 290 1 763 215 5 67 chr12 118758267 118758328 -25028127 + L1MB8 LINE L1 4889 4952 -1194 734 106 0 0 chr12 118758545 118758649 -25027806 - MER41A LTR ERV1 0 554 451 1320 154 89 28 chr12 118758650 118758897 -25027558 + AluJb SINE Alu 35 296 -16 4637 168 37 29 chr12 118758901 118760062 -25026393 + L1MB8 LINE L1 4989 6166 -12 401 101 76 0 chr12 118760062 118760135 -25026320 + L1MB7 LINE L1 6100 6184 0 7435 43 5 34 chr12 118760304 118761845 -25024610 + SVA Other Other 1 1381 -5 2337 103 0 0 chr12 118762116 118762418 -25024037 - AluSx SINE Alu -7 305 4 216 149 0 128 chr12 118764288 118764335 -25022120 + L2 LINE L2 3014 3054 -259 1602 93 0 10 chr12 118764498 118764703 -25021752 - AluSq SINE Alu -110 203 1 2242 96 0 20 chr12 118765135 118765438 -25021017 - AluSg SINE Alu -13 297 1 1956 131 71 0 chr12 118765643 118765925 -25020530 - AluSq SINE Alu -11 302 1 210 37 0 0 chr12 118765976 118766003 -25020452 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2492 72 0 7 chr12 118766126 118766430 -25020025 - AluY SINE Alu -9 302 1 202 200 0 0 chr12 118767279 118767319 -25019136 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr12 118767422 118767446 -25019009 + AT_rich Low_complexity Low_complexity 1 24 0 1737 99 141 11 chr12 118768199 118768462 -25017993 - AluSg1 SINE Alu -12 297 1 200 283 106 44 chr12 118772695 118772808 -25013647 + L2 LINE L2 2350 2469 -845 239 254 34 0 chr12 118773148 118773207 -25013248 + L2 LINE L2 3022 3082 -190 2378 87 0 0 chr12 118774045 118774345 -25012110 + AluSc SINE Alu 1 300 -9 215 313 84 38 chr12 118775227 118775358 -25011097 + MIR3 SINE MIR 3 139 -69 386 47 125 0 chr12 118775460 118775524 -25010931 - MER41A LTR ERV1 -94 460 389 2329 92 0 0 chr12 118776003 118776298 -25010157 + AluY SINE Alu 1 295 -16 2234 104 0 3 chr12 118776305 118776593 -25009862 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr12 118776649 118776670 -25009785 + AT_rich Low_complexity Low_complexity 1 21 0 1566 81 77 0 chr12 118776673 118776882 -25009573 + AluSg SINE Alu 1 225 -85 252 77 0 0 chr12 118776883 118776922 -25009533 + AluSg SINE Alu 268 306 -2 439 291 106 6 chr12 118776935 118777114 -25009341 - L1MC4a LINE L1 -1908 5900 5704 2214 124 0 6 chr12 118777116 118777430 -25009025 + AluSx SINE Alu 1 312 0 874 180 0 0 chr12 118777455 118777594 -25008861 + FLAM_C SINE Alu 1 139 -4 537 267 24 21 chr12 118777598 118777788 -25008667 - L1MC4a LINE L1 -469 5652 5502 843 188 0 0 chr12 118778136 118778269 -25008186 - FLAM_A SINE Alu 0 133 1 2270 92 7 3 chr12 118779361 118779656 -25006799 - AluSg SINE Alu -14 296 1 2301 113 0 0 chr12 118779750 118780051 -25006404 + AluSc SINE Alu 1 301 -8 2217 113 3 0 chr12 118780078 118780379 -25006076 - AluSx SINE Alu -10 302 1 820 170 129 0 chr12 118782646 118782793 -25003662 - FRAM SINE Alu 0 166 1 2385 86 0 0 chr12 118784207 118784510 -25001945 + AluY SINE Alu 1 303 -8 2075 90 32 4 chr12 118784518 118784796 -25001659 + AluSp SINE Alu 1 286 -27 2239 82 6 60 chr12 118784807 118785124 -25001331 + AluSc SINE Alu 1 300 -9 1610 210 38 75 chr12 118785472 118785744 -25000711 - Charlie4a DNA MER1_type -1454 507 227 688 240 0 0 chr12 118785744 118785865 -25000590 + FLAM_A SINE Alu 1 121 -12 2172 98 7 0 chr12 118785873 118786158 -25000297 + AluSx SINE Alu 1 287 -25 1610 210 38 75 chr12 118786158 118786399 -25000056 - Charlie4a DNA MER1_type -1741 220 4 1828 160 70 30 chr12 118786934 118787188 -24999267 + MER2 DNA MER2_type 1 272 -72 1635 170 32 32 chr12 118787188 118787499 -24998956 - AluSx SINE Alu 0 312 2 1828 160 70 30 chr12 118787499 118787575 -24998880 + MER2 DNA MER2_type 272 344 0 59 27 0 0 chr12 118787735 118787808 -24998647 + AT_rich Low_complexity Low_complexity 1 73 0 1425 187 60 8 chr12 118787816 118788083 -24998372 + AluSx SINE Alu 9 289 -23 1287 178 100 68 chr12 118788529 118788810 -24997645 + AluJb SINE Alu 3 292 -10 2059 115 3 0 chr12 118789021 118789316 -24997139 + AluSg SINE Alu 5 300 -10 2800 7 0 0 chr12 118789393 118789691 -24996764 + AluYa5 SINE Alu 1 298 -13 191 306 90 52 chr12 118789785 118789919 -24996536 - L2 LINE L2 -563 2751 2613 784 178 0 33 chr12 118790054 118790206 -24996249 + L1MB7 LINE L1 5428 5574 -610 1846 171 60 116 chr12 118790310 118790452 -24996003 + L1MB7 LINE L1 5572 5720 -464 2266 108 3 7 chr12 118790452 118790759 -24995696 - AluSx SINE Alu -6 306 1 1846 171 60 116 chr12 118790759 118790977 -24995478 + L1MB7 LINE L1 5720 5891 -293 2139 126 7 0 chr12 118790977 118791279 -24995176 + AluSx SINE Alu 1 304 -8 1846 171 60 116 chr12 118791279 118791485 -24994970 + L1MB7 LINE L1 5891 6107 -77 1679 178 16 16 chr12 118791488 118791791 -24994664 + AluJo SINE Alu 1 303 -9 1404 175 0 13 chr12 118792093 118792327 -24994128 - AluJb SINE Alu -81 231 1 837 164 8 8 chr12 118792877 118793011 -24993444 + AluJo SINE Alu 2 135 -177 234 234 0 0 chr12 118793013 118793060 -24993395 + GA-rich Low_complexity Low_complexity 2 48 0 2499 73 0 6 chr12 118793140 118793453 -24993002 + AluY SINE Alu 1 311 0 21 36 0 0 chr12 118794204 118794232 -24992223 + AT_rich Low_complexity Low_complexity 1 28 0 399 308 129 65 chr12 118794312 118794371 -24992084 - L1M4 LINE L1 -924 5222 5168 2209 114 10 7 chr12 118794371 118794670 -24991785 - AluSx SINE Alu -12 300 1 399 308 129 65 chr12 118794670 118795018 -24991437 - L1M4 LINE L1 -978 5168 4844 2268 76 66 0 chr12 118795018 118795307 -24991148 - AluSp SINE Alu -5 308 1 399 308 129 65 chr12 118795307 118795475 -24990980 - L1M4 LINE L1 -1302 4844 4688 1754 112 109 0 chr12 118795475 118795742 -24990713 - AluSq SINE Alu -17 296 1 399 308 129 65 chr12 118795742 118795876 -24990579 - L1M4 LINE L1 -1458 4688 4465 1637 98 47 4 chr12 118795912 118796146 -24990309 - AluSx SINE Alu -19 293 50 1639 183 25 0 chr12 118796152 118796436 -24990019 - AluJb SINE Alu -21 291 1 27 0 0 0 chr12 118796551 118796578 -24989877 + AT_rich Low_complexity Low_complexity 1 27 0 1273 126 0 0 chr12 118797106 118797280 -24989175 - AluSg/x SINE Alu -10 300 127 1688 171 7 17 chr12 118797473 118797771 -24988684 + AluJo SINE Alu 5 299 -13 354 266 35 70 chr12 118798053 118798196 -24988259 - L2 LINE L2 -1 3271 3134 2462 75 7 0 chr12 118798552 118798859 -24987596 + AluY SINE Alu 1 309 -2 1554 70 5 0 chr12 118798989 118799176 -24987279 + AluSq SINE Alu 1 188 -125 583 144 0 0 chr12 118799176 118799266 -24987189 + AluSg/x SINE Alu 218 307 -2 1699 171 23 23 chr12 118799355 118799654 -24986801 + AluJb SINE Alu 1 299 -13 680 215 55 12 chr12 118799985 118800148 -24986307 - MER58B DNA MER1_type 0 341 172 200 272 0 37 chr12 118800315 118800396 -24986059 + A-rich Low_complexity Low_complexity 3 80 0 2200 115 0 0 chr12 118800821 118801109 -24985346 + AluSg SINE Alu 1 288 -22 2323 101 3 0 chr12 118801118 118801424 -24985031 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr12 118801449 118801470 -24984985 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 118801511 118801535 -24984920 + (T)n Simple_repeat Simple_repeat 1 24 0 2066 141 3 0 chr12 118801585 118801882 -24984573 + AluSx SINE Alu 1 298 -14 443 256 67 33 chr12 118801982 118802162 -24984293 + MIR SINE MIR 77 262 0 1791 104 46 19 chr12 118802434 118802694 -24983761 - AluSx SINE Alu -45 267 1 329 225 108 67 chr12 118802768 118802888 -24983567 + MER5B DNA MER1_type 54 178 0 1545 105 0 44 chr12 118803005 118803234 -24983221 + AluSg/x SINE Alu 86 304 -6 2318 88 7 7 chr12 118803458 118803765 -24982690 + AluSg SINE Alu 3 309 -1 2385 87 0 0 chr12 118804691 118804990 -24981465 + AluSc SINE Alu 1 299 -10 2162 123 10 10 chr12 118805547 118805855 -24980600 - AluSx SINE Alu -4 308 1 1438 184 22 4 chr12 118806975 118807247 -24979208 + MER2 DNA MER2_type 1 277 -68 288 0 0 0 chr12 118807247 118807279 -24979176 + (A)n Simple_repeat Simple_repeat 1 32 0 1646 186 3 14 chr12 118807279 118807575 -24978880 - AluJb SINE Alu -19 293 1 428 197 0 0 chr12 118807584 118807650 -24978805 + MER2 DNA MER2_type 280 345 0 709 179 86 7 chr12 118807932 118808072 -24978383 - MER46A DNA MER2_type 0 236 86 227 260 154 32 chr12 118807969 118808092 -24978363 + MER46A DNA MER2_type 99 236 0 * 605 219 91 27 chr12 118808319 118808506 -24977949 + L1ME1 LINE L1 5932 6130 -36 2684 117 22 5 chr12 118808999 118809368 -24977087 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr12 118809602 118809626 -24976829 + AT_rich Low_complexity Low_complexity 1 24 0 863 176 27 0 chr12 118809906 118810054 -24976401 + FRAM SINE Alu 1 150 -26 2271 112 0 0 chr12 118810210 118810513 -24975942 + AluSg SINE Alu 1 303 -7 296 290 80 0 chr12 118811003 118811103 -24975352 + MIR3 SINE MIR 100 207 -1 485 320 27 7 chr12 118811232 118811379 -24975076 - MIR SINE MIR -111 151 2 1846 171 3 0 chr12 118812191 118812477 -24973978 + AluJb SINE Alu 2 288 -24 524 244 17 0 chr12 118812493 118812612 -24973843 + L1MC5 LINE L1 7774 7894 -67 303 251 81 66 chr12 118812676 118812804 -24973651 + L1MC5 LINE L1 7318 7452 -509 1858 100 130 0 chr12 118812804 118813073 -24973382 - AluSx SINE Alu -8 304 1 303 251 81 66 chr12 118813073 118813155 -24973300 + L1MC5 LINE L1 7452 7531 -430 2238 102 6 16 chr12 118813166 118813479 -24972976 + AluSg SINE Alu 1 310 0 681 285 22 0 chr12 118813653 118813832 -24972623 + L1M4b LINE L1 862 1044 -5815 1154 197 33 9 chr12 118813835 118814129 -24972326 - MER2 DNA MER2_type -5 340 2 1524 204 123 48 chr12 118814136 118814616 -24971839 + L1M4b LINE L1 1051 1566 -5293 247 159 0 0 chr12 118814617 118814661 -24971794 + AluY SINE Alu 1 44 -258 1523 93 0 28 chr12 118814661 118814875 -24971580 + AluY SINE Alu 90 297 -14 1968 120 7 23 chr12 118814887 118815188 -24971267 + AluSq SINE Alu 1 296 -17 1725 155 60 0 chr12 118815226 118815491 -24970964 + AluSx SINE Alu 1 281 -31 2303 98 0 0 chr12 118815491 118815785 -24970670 - AluY SINE Alu -16 295 1 1281 213 49 14 chr12 118815827 118816113 -24970342 + AluJo SINE Alu 2 297 -15 2296 108 3 0 chr12 118816113 118816420 -24970035 + AluSp SINE Alu 1 308 -5 2739 177 49 125 chr12 118816420 118817398 -24969057 + L1MC4 LINE L1 7138 8041 -1 206 197 115 33 chr12 118817485 118817546 -24968909 + L2 LINE L2 2995 3060 -212 323 346 83 6 chr12 118817732 118817888 -24968567 - MER91A DNA MER1_type -21 175 8 666 212 21 95 chr12 118818066 118818255 -24968200 + MER58C DNA MER1_type 38 212 -3 731 207 8 0 chr12 118818318 118818439 -24968016 + FLAM_A SINE Alu 1 122 -11 365 148 16 16 chr12 118818496 118818557 -24967898 - U7 snRNA snRNA -1 62 2 889 181 0 0 chr12 118818564 118818697 -24967758 - FLAM_C SINE Alu 0 133 1 1370 156 28 211 chr12 118818882 118819388 -24967067 + Tigger1 DNA MER2_type 1 413 -2005 2049 144 0 0 chr12 118819388 118819686 -24966769 + AluSx SINE Alu 1 298 -14 3318 132 49 32 chr12 118819686 118819825 -24966630 + Tigger1 DNA MER2_type 1316 1451 -967 2372 79 3 19 chr12 118819825 118820140 -24966315 + AluSp SINE Alu 1 310 -3 3318 132 49 32 chr12 118820140 118820308 -24966147 + Tigger1 DNA MER2_type 1451 1615 -803 2349 102 0 3 chr12 118820308 118820612 -24965843 - AluSq SINE Alu -10 303 1 3318 132 49 32 chr12 118820612 118820893 -24965562 + Tigger1 DNA MER2_type 1615 1915 -503 2238 112 0 0 chr12 118820894 118821189 -24965266 + AluSg SINE Alu 1 295 -15 2039 128 28 0 chr12 118821206 118821496 -24964959 + AluSx SINE Alu 1 298 -14 2267 119 0 0 chr12 118821653 118821964 -24964491 + AluSx SINE Alu 1 311 -1 391 270 73 15 chr12 118822268 118822405 -24964050 + L2 LINE L2 2962 3106 -207 266 0 29 0 chr12 118822661 118822695 -24963760 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 695 238 12 115 chr12 118822825 118823069 -24963386 + MIR SINE MIR 43 261 -1 1708 161 51 4 chr12 118823121 118823394 -24963061 + AluJb SINE Alu 1 286 -26 887 211 30 10 chr12 118823579 118823778 -24962677 + MER3 DNA MER1_type 5 207 -2 221 266 124 47 chr12 118823787 118823956 -24962499 - L3 LINE CR1 -113 1464 1283 390 224 88 14 chr12 118823956 118824103 -24962352 + L1MC5 LINE L1 7768 7925 -36 570 242 227 0 chr12 118824661 118824859 -24961596 - MIR SINE MIR 0 262 20 388 195 58 132 chr12 118825341 118825410 -24961045 + MER58C DNA MER1_type 30 103 -2317 2218 113 21 0 chr12 118825410 118825701 -24960754 + AluSx SINE Alu 1 297 -15 388 195 58 132 chr12 118825701 118825792 -24960663 + MER58C DNA MER1_type 103 177 -2243 2174 127 0 3 chr12 118825792 118826092 -24960363 + AluSq SINE Alu 1 299 -14 388 195 58 132 chr12 118826092 118826120 -24960335 + MER58C DNA MER1_type 177 205 -10 28 0 0 0 chr12 118826713 118826741 -24959714 + AT_rich Low_complexity Low_complexity 1 28 0 2122 133 0 9 chr12 118826833 118827170 -24959285 - AluSx SINE Alu 0 312 1 594 266 45 41 chr12 118827219 118827463 -24958992 + MIR SINE MIR 6 250 -12 192 77 0 0 chr12 118827534 118827560 -24958895 + (T)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr12 118827622 118827652 -24958803 + AT_rich Low_complexity Low_complexity 1 30 0 2242 91 37 7 chr12 118827710 118828008 -24958447 + AluY SINE Alu 1 307 -4 1853 164 16 30 chr12 118828093 118828397 -24958058 - AluJo SINE Alu -12 300 1 454 283 51 14 chr12 118828566 118828704 -24957751 + MIR SINE MIR 60 202 -60 1008 201 54 34 chr12 118828905 118829144 -24957311 - AluJo SINE Alu -56 256 13 266 320 134 0 chr12 118829282 118829379 -24957076 + L2 LINE L2 3186 3295 -18 2152 93 11 0 chr12 118829476 118829755 -24956700 + AluSq SINE Alu 1 282 -31 474 33 0 0 chr12 118829755 118829815 -24956640 + (CATAA)n Simple_repeat Simple_repeat 3 62 0 1795 159 30 34 chr12 118829835 118830131 -24956324 + AluSx SINE Alu 1 295 -17 1059 189 11 5 chr12 118830159 118830350 -24956105 - AluSg/x SINE Alu -14 298 107 2175 71 7 11 chr12 118830351 118830661 -24955794 + AluY SINE Alu 1 309 0 1356 217 12 53 chr12 118830682 118830859 -24955596 - AluJo SINE Alu -3 309 149 1653 155 4 8 chr12 118830859 118831124 -24955331 - AluSx SINE Alu -14 298 35 1356 217 12 53 chr12 118831124 118831268 -24955187 - AluJo SINE Alu -163 149 1 2119 117 17 0 chr12 118832161 118832461 -24953994 - AluSx SINE Alu -7 305 1 201 196 34 17 chr12 118832469 118832589 -24953866 + CT-rich Low_complexity Low_complexity 1 122 0 338 145 0 29 chr12 118832602 118832671 -24953784 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 483 208 94 0 chr12 118832672 118832768 -24953687 - FLAM_A SINE Alu -15 127 23 1653 162 0 87 chr12 118832792 118833125 -24953330 - AluJo SINE Alu -8 304 1 707 186 26 0 chr12 118833207 118833320 -24953135 + FLAM_A SINE Alu 1 116 -17 2254 94 7 7 chr12 118833320 118833618 -24952837 + AluSx SINE Alu 1 298 -14 828 195 81 102 chr12 118833620 118833756 -24952699 - L1ME1 LINE L1 -315 5851 5714 2473 83 3 0 chr12 118833756 118834057 -24952398 + AluSp SINE Alu 1 302 -11 828 195 81 102 chr12 118834057 118834271 -24952184 - L1ME1 LINE L1 -452 5714 5439 1712 163 21 10 chr12 118834271 118834559 -24951896 - AluJb SINE Alu -21 291 1 828 195 81 102 chr12 118834559 118834650 -24951805 - L1ME1 LINE L1 -727 5439 5348 2338 148 46 0 chr12 118834663 118835102 -24951353 - Tigger3(Golem) DNA MER2_type -3 3026 2568 2400 93 0 3 chr12 118835103 118835404 -24951051 - AluSx SINE Alu -12 300 1 860 218 21 90 chr12 118835433 118835667 -24950788 - AluJo SINE Alu -92 220 3 24 0 0 0 chr12 118835901 118835925 -24950530 + AT_rich Low_complexity Low_complexity 1 24 0 1517 172 112 0 chr12 118835932 118836200 -24950255 + AluJb SINE Alu 1 298 -14 192 77 0 0 chr12 118836301 118836327 -24950128 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2170 120 17 0 chr12 118836344 118836636 -24949819 + AluSq SINE Alu 1 297 -16 2298 84 13 7 chr12 118836651 118836949 -24949506 + AluSq SINE Alu 1 300 -13 2476 94 0 0 chr12 118837046 118837355 -24949100 + AluSx SINE Alu 1 309 -3 2262 98 0 38 chr12 118837622 118837940 -24948515 - AluSx SINE Alu -6 306 1 207 100 0 0 chr12 118838156 118838186 -24948269 + (A)n Simple_repeat Simple_repeat 1 30 0 482 287 96 28 chr12 118838501 118838783 -24947672 + L2 LINE L2 3006 3306 -7 1153 91 0 0 chr12 118838888 118839031 -24947424 - AluSg/x SINE Alu -16 294 152 385 297 75 5 chr12 118839685 118839897 -24946558 + L1ME LINE L1 5549 5775 -346 2132 124 3 0 chr12 118839905 118840203 -24946252 + AluSx SINE Alu 1 299 -13 1034 78 0 49 chr12 118840319 118840461 -24945994 + AluSq/x SINE Alu 1 135 -178 2023 117 3 21 chr12 118840461 118840751 -24945704 + AluSx SINE Alu 1 285 -27 405 0 0 0 chr12 118840751 118840796 -24945659 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 60 0 0 chr12 118843253 118843303 -24943152 + GC_rich Low_complexity Low_complexity 1 50 0 582 15 0 0 chr12 118843499 118843566 -24942889 + (CTG)n Simple_repeat Simple_repeat 1 67 0 25 90 0 0 chr12 118843657 118843724 -24942731 + GC_rich Low_complexity Low_complexity 1 67 0 34 42 0 0 chr12 118843918 118843966 -24942489 + GC_rich Low_complexity Low_complexity 1 48 0 1600 72 31 0 chr12 118845286 118845508 -24940947 + AluSg/x SINE Alu 83 310 0 337 245 182 6 chr12 118845591 118845750 -24940705 - L2 LINE L2 -258 3055 2869 2263 105 0 7 chr12 118845802 118846108 -24940347 + AluSq SINE Alu 1 304 -9 2146 98 3 7 chr12 118846174 118846461 -24939994 + AluSx SINE Alu 7 292 -20 738 191 0 8 chr12 118846503 118846629 -24939826 + FLAM_C SINE Alu 2 126 -17 1821 195 58 24 chr12 118846704 118847166 -24939289 - L1MB7 LINE L1 -4 6180 5703 1687 137 0 72 chr12 118847178 118847321 -24939134 + AluJo SINE Alu 11 124 -188 2419 92 0 3 chr12 118847321 118847625 -24938830 + AluSx SINE Alu 1 303 -9 1687 137 0 72 chr12 118847625 118847774 -24938681 + AluJo SINE Alu 124 282 -30 474 189 0 19 chr12 118847835 118847941 -24938514 - L1MB7 LINE L1 -470 5714 5611 187 28 56 28 chr12 118847942 118847978 -24938477 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2265 93 0 17 chr12 118848038 118848173 -24938282 + AluSc SINE Alu 1 137 -172 2461 80 0 0 chr12 118848173 118848475 -24937980 + AluY SINE Alu 1 302 -9 2265 93 0 17 chr12 118848475 118848630 -24937825 + AluSc SINE Alu 137 286 -23 180 0 0 0 chr12 118848632 118848652 -24937803 + (TA)n Simple_repeat Simple_repeat 2 21 0 306 232 12 12 chr12 118848679 118848761 -24937694 + MLT1E LTR MaLR 1 82 -511 986 175 6 23 chr12 118848774 118848951 -24937504 - AluJb SINE Alu -12 300 127 1770 170 35 0 chr12 118848964 118849247 -24937208 - AluSx SINE Alu -14 298 6 2323 119 0 0 chr12 118849595 118849905 -24936550 - AluSg SINE Alu 0 310 1 2273 110 0 35 chr12 118849905 118850086 -24936369 - AluSx SINE Alu -6 306 139 2683 52 0 0 chr12 118850086 118850394 -24936061 - AluY SINE Alu -2 309 2 2273 110 0 35 chr12 118850394 118850529 -24935926 - AluSx SINE Alu -173 139 1 294 202 30 91 chr12 118851829 118851928 -24934527 - MIR SINE MIR 0 262 170 540 188 30 0 chr12 118851973 118852074 -24934381 + MER20 DNA MER1_type 29 132 -87 2433 168 226 65 chr12 118852074 118852356 -24934099 + MER21B LTR ERV1 1 236 -627 2132 132 3 3 chr12 118852356 118852667 -24933788 - AluSx SINE Alu -1 311 1 2062 83 0 104 chr12 118852669 118852995 -24933460 - AluY SINE Alu -15 296 5 2433 168 226 65 chr12 118852995 118853378 -24933077 + MER21B LTR ERV1 236 556 -307 2385 90 0 7 chr12 118853378 118853679 -24932776 - AluSx SINE Alu -13 299 1 2433 168 226 65 chr12 118853679 118853692 -24932763 + MER21B LTR ERV1 556 566 -297 2369 101 7 0 chr12 118853692 118853999 -24932456 - AluSx SINE Alu -3 309 1 2433 168 226 65 chr12 118853999 118854058 -24932397 + MER21B LTR ERV1 566 863 0 551 167 0 10 chr12 118854065 118854161 -24932294 + MER20 DNA MER1_type 125 219 0 733 269 12 6 chr12 118854162 118854333 -24932122 - MIR SINE MIR -86 176 5 2177 113 6 31 chr12 118854350 118854669 -24931786 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr12 118854881 118854904 -24931551 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2130 120 7 19 chr12 118854906 118855214 -24931241 + AluSx SINE Alu 3 306 -6 2042 131 10 6 chr12 118855216 118855528 -24930927 + AluSp SINE Alu 1 313 0 1108 144 0 24 chr12 118855529 118855696 -24930759 + AluJb SINE Alu 132 294 -18 1951 124 7 46 chr12 118855698 118855838 -24930617 + AluSx SINE Alu 1 145 -167 2198 122 0 3 chr12 118855838 118856133 -24930322 + AluSg SINE Alu 1 294 -16 2225 57 3 57 chr12 118856135 118856458 -24929997 + AluY SINE Alu 1 307 0 1951 124 7 46 chr12 118856458 118856619 -24929836 + AluSx SINE Alu 146 294 -18 1791 145 0 38 chr12 118856626 118856950 -24929505 + AluY SINE Alu 5 317 0 2482 81 0 0 chr12 118857177 118857474 -24928981 + AluY SINE Alu 1 297 -14 977 126 7 0 chr12 118857560 118857695 -24928760 + AluSq/x SINE Alu 1 136 -176 2180 89 41 3 chr12 118857695 118857986 -24928469 + AluSx SINE Alu 1 302 -10 2209 99 0 10 chr12 118858549 118858843 -24927612 + AluSx SINE Alu 11 301 -11 462 259 32 132 chr12 118858984 118859047 -24927408 + MIR SINE MIR 1 69 -193 1862 140 53 13 chr12 118859047 118859347 -24927108 + AluJo SINE Alu 1 312 0 1875 150 34 3 chr12 118859348 118859642 -24926813 + AluJb SINE Alu 1 303 -9 462 259 32 132 chr12 118859642 118859653 -24926802 + MIR SINE MIR 69 79 -183 2021 136 0 29 chr12 118859653 118859969 -24926486 + AluSq SINE Alu 1 307 -6 462 259 32 132 chr12 118859969 118860142 -24926313 + MIR SINE MIR 79 226 -36 2254 103 3 3 chr12 118861477 118861778 -24924677 - AluSx SINE Alu -11 301 1 1644 130 28 8 chr12 118861901 118862148 -24924307 - AluJo SINE Alu -60 252 1 2436 90 3 3 chr12 118862309 118862621 -24923834 - AluSp SINE Alu -1 312 1 2298 107 0 22 chr12 118862651 118862970 -24923485 + AluSx SINE Alu 1 312 0 2166 114 4 0 chr12 118863615 118863922 -24922533 + AluSx SINE Alu 1 308 0 926 122 8 0 chr12 118864233 118864364 -24922091 + AluSq/x SINE Alu 1 132 -180 2323 111 3 0 chr12 118864383 118864681 -24921774 + AluSx SINE Alu 1 299 -13 2124 119 10 3 chr12 118865395 118865698 -24920757 + AluSx SINE Alu 1 305 -7 1987 121 19 54 chr12 118865831 118866145 -24920310 - AluJo SINE Alu -9 303 1 2490 77 0 16 chr12 118866185 118866496 -24919959 - AluY SINE Alu -5 306 1 21 0 0 0 chr12 118866711 118866732 -24919723 + AT_rich Low_complexity Low_complexity 1 21 0 2272 104 0 0 chr12 118869191 118869478 -24916977 - AluSq SINE Alu -21 292 6 2288 113 0 0 chr12 118869492 118869793 -24916662 - AluSg SINE Alu -9 301 1 1683 161 3 46 chr12 118870121 118870426 -24916029 + AluJo SINE Alu 1 292 -20 1620 171 49 14 chr12 118870451 118870738 -24915717 + AluJo SINE Alu 12 308 -4 638 233 30 115 chr12 118870824 118870919 -24915536 + L1ME LINE L1 5510 5612 -509 2327 105 3 0 chr12 118870919 118871224 -24915231 + AluSg SINE Alu 1 306 -4 638 233 30 115 chr12 118871224 118871404 -24915051 + L1ME LINE L1 5612 5753 -368 1549 187 13 47 chr12 118871404 118871704 -24914751 + AluJo SINE Alu 1 290 -22 638 233 30 115 chr12 118871704 118871766 -24914689 + L1ME LINE L1 5753 5819 -302 897 160 13 114 chr12 118872015 118872049 -24914406 + AluJb SINE Alu 99 135 -177 2189 95 54 0 chr12 118872049 118872345 -24914110 + AluSp SINE Alu 1 312 -1 897 160 13 114 chr12 118872345 118872443 -24914012 + AluJb SINE Alu 135 241 -71 2142 77 7 74 chr12 118872443 118872753 -24913702 + AluSc SINE Alu 1 289 -20 2246 74 0 74 chr12 118872757 118873067 -24913388 + AluSc SINE Alu 1 287 -22 2409 58 7 3 chr12 118873071 118873362 -24913093 + AluY SINE Alu 1 292 -19 897 160 13 114 chr12 118873362 118873455 -24913000 + AluJb SINE Alu 247 311 -1 1954 154 7 0 chr12 118873585 118873878 -24912577 - AluJb SINE Alu -17 295 1 2273 87 0 0 chr12 118874692 118874991 -24911464 - AluSx SINE Alu -13 299 1 821 94 79 8 chr12 118874991 118875118 -24911337 - AluSq/x SINE Alu -176 136 1 267 31 0 0 chr12 118875657 118875689 -24910766 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1896 126 3 0 chr12 118875689 118875975 -24910480 + AluSg1 SINE Alu 1 287 -22 2308 104 0 0 chr12 118876057 118876366 -24910089 - AluSg SINE Alu -1 309 1 2122 103 0 0 chr12 118876662 118876953 -24909502 - AluY SINE Alu -20 291 1 1427 162 0 102 chr12 118877024 118877150 -24909305 + AluJo SINE Alu 1 138 -164 2034 97 3 10 chr12 118877150 118877440 -24909015 - AluSc SINE Alu -21 288 1 1427 162 0 102 chr12 118877440 118877646 -24908809 + AluJo SINE Alu 138 299 -3 324 234 131 7 chr12 118877672 118877809 -24908646 + MER112 DNA MER1_type 67 220 -40 2122 117 0 0 chr12 118878748 118879046 -24907409 - AluSx SINE Alu -14 298 1 180 264 0 38 chr12 118880244 118880297 -24906158 - L2 LINE L2 -73 3240 3190 430 306 149 0 chr12 118880515 118880649 -24905806 + L2 LINE L2 3119 3272 0 305 221 115 82 chr12 118881066 118881151 -24905304 + L2 LINE L2 3147 3228 -44 1708 174 9 25 chr12 118881151 118881468 -24904987 - AluJo SINE Alu 0 312 1 305 221 115 82 chr12 118881468 118881480 -24904975 + L2 LINE L2 3228 3238 -34 2286 82 0 0 chr12 118881480 118881773 -24904682 - AluSq SINE Alu -20 293 1 305 221 115 82 chr12 118881773 118881796 -24904659 + L2 LINE L2 3238 3272 0 643 149 0 30 chr12 118882042 118882176 -24904279 - L1MB8 LINE L1 0 6178 6049 1508 186 0 14 chr12 118882177 118882457 -24903998 + AluJo SINE Alu 2 277 -35 * 2089 113 0 3 chr12 118882456 118882756 -24903699 - AluSq SINE Alu -14 299 1 527 75 19 122 chr12 118882766 118882819 -24903636 - L1MA2 LINE L1 0 6304 6266 2200 102 0 0 chr12 118882819 118883113 -24903342 - AluSx SINE Alu -16 296 3 527 75 19 122 chr12 118883113 118883166 -24903289 - L1MA2 LINE L1 -38 6266 6209 937 168 0 0 chr12 118883178 118883345 -24903110 - AluJb SINE Alu -8 304 138 234 0 0 0 chr12 118883345 118883371 -24903084 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 722 154 0 0 chr12 118883371 118883488 -24902967 - AluSg/x SINE Alu -29 281 165 1189 123 80 88 chr12 118883488 118883739 -24902716 - AluSg1 SINE Alu -60 249 1 28 0 0 0 chr12 118883750 118883778 -24902677 + AT_rich Low_complexity Low_complexity 1 28 0 752 175 8 0 chr12 118883778 118883904 -24902551 - FLAM_C SINE Alu -6 127 1 1047 243 96 69 chr12 118883905 118884342 -24902113 + L2 LINE L2 2308 2732 -581 2018 118 23 3 chr12 118884342 118884648 -24901807 - AluSx SINE Alu 0 312 1 1047 243 96 69 chr12 118884648 118884661 -24901794 + L2 LINE L2 2732 2743 -570 2106 112 0 7 chr12 118884661 118884964 -24901491 - AluSx SINE Alu -11 301 1 1047 243 96 69 chr12 118884964 118885145 -24901310 + L2 LINE L2 2743 3015 -298 1823 118 3 37 chr12 118885155 118885317 -24901138 - AluSx SINE Alu -15 297 148 2154 92 3 0 chr12 118885317 118885610 -24900845 - AluY SINE Alu -17 294 1 1823 118 3 37 chr12 118885610 118885744 -24900711 - AluSx SINE Alu -164 148 11 2024 117 0 3 chr12 118885753 118886051 -24900404 - AluSx SINE Alu -13 299 3 1687 157 0 3 chr12 118886055 118886342 -24900113 - AluJb SINE Alu -8 304 19 1498 159 13 60 chr12 118886343 118886645 -24899810 - AluJb SINE Alu -18 294 7 2222 50 14 0 chr12 118886765 118887043 -24899412 - AluY SINE Alu -7 304 23 1809 209 54 48 chr12 118887093 118887204 -24899251 - MLT1D LTR MaLR -4 501 392 1262 141 66 102 chr12 118887204 118887382 -24899073 - AluJo SINE Alu -19 293 129 1735 168 0 0 chr12 118887382 118887662 -24898793 - AluJb SINE Alu -30 282 3 1262 141 66 102 chr12 118887662 118887787 -24898668 - AluJo SINE Alu -183 129 1 1809 209 54 48 chr12 118887787 118888173 -24898282 - MLT1D LTR MaLR -113 392 1 2206 94 7 0 chr12 118888385 118888683 -24897772 + AluSx SINE Alu 1 300 -12 942 139 80 139 chr12 118888831 118888975 -24897480 - AluJo SINE Alu 0 312 161 2234 81 20 0 chr12 118888975 118889271 -24897184 - AluSq SINE Alu -10 303 2 1719 113 4 25 chr12 118889278 118889553 -24896902 - AluSx SINE Alu 0 312 44 942 139 80 139 chr12 118889553 118889702 -24896753 - AluJo SINE Alu -157 155 29 577 265 56 41 chr12 118890097 118890293 -24896162 - MIR SINE MIR -63 199 1 2220 99 3 3 chr12 118890422 118890725 -24895730 + AluSx SINE Alu 1 303 -9 978 164 0 0 chr12 118890725 118890884 -24895571 + AluSg/x SINE Alu 134 292 -20 576 313 5 62 chr12 118890962 118891040 -24895415 - MIR SINE MIR -43 219 138 1368 160 102 11 chr12 118891040 118891315 -24895140 - AluJo SINE Alu -12 300 1 576 313 5 62 chr12 118891315 118891460 -24894995 - MIR SINE MIR -124 138 9 2113 136 0 0 chr12 118891547 118891857 -24894598 + AluSx SINE Alu 1 310 -2 188 242 242 0 chr12 118891860 118891926 -24894529 + MIR SINE MIR 32 113 -95 408 285 32 145 chr12 118891945 118892289 -24894166 - L2 LINE L2 -56 3216 2912 2165 95 24 0 chr12 118892303 118892598 -24893857 + AluSc SINE Alu 1 302 -7 1989 113 3 0 chr12 118892768 118893052 -24893403 - AluSg SINE Alu -25 285 1 227 279 0 16 chr12 118893060 118893121 -24893334 - MIR SINE MIR -111 151 92 303 202 95 48 chr12 118893143 118893227 -24893228 - L2 LINE L2 -36 3277 3190 2156 108 0 3 chr12 118893245 118893552 -24892903 + AluSx SINE Alu 1 306 -6 796 168 132 0 chr12 118893580 118893747 -24892708 - MER53 DNA DNA 0 189 1 22 35 0 0 chr12 118893832 118893861 -24892594 + AT_rich Low_complexity Low_complexity 1 29 0 1864 162 13 0 chr12 118893861 118894169 -24892286 + AluJb SINE Alu 1 312 0 297 170 0 0 chr12 118894188 118894235 -24892220 - MER66A LTR ERV1 -142 336 290 1032 83 8 0 chr12 118894312 118894445 -24892010 + AluSc SINE Alu 1 134 -175 1795 94 69 18 chr12 118894445 118894722 -24891733 + AluSp SINE Alu 1 291 -22 469 216 78 0 chr12 118894734 118894850 -24891605 + MER112 DNA MER1_type 129 253 -7 1983 133 0 0 chr12 118894992 118895285 -24891170 + AluSx SINE Alu 1 293 -19 2000 120 13 0 chr12 118895285 118895592 -24890863 + AluSq SINE Alu 1 312 -1 1589 160 24 27 chr12 118895672 118895966 -24890489 - AluJb SINE Alu -19 293 1 1971 95 10 33 chr12 118895981 118896150 -24890305 - AluSq SINE Alu -15 298 138 2158 81 24 7 chr12 118896150 118896447 -24890008 - AluSc SINE Alu -7 302 1 1971 95 10 33 chr12 118896447 118896582 -24889873 - AluSq SINE Alu -175 138 1 536 167 0 10 chr12 118896756 118896858 -24889597 + FLAM_A SINE Alu 42 142 0 1636 195 13 0 chr12 118897139 118897442 -24889013 + AluJb SINE Alu 1 307 -5 1222 212 32 11 chr12 118897672 118897985 -24888470 + AluJb SINE Alu 1 319 0 1876 110 4 0 chr12 118898141 118898405 -24888050 + AluSx SINE Alu 40 304 -8 2285 80 10 13 chr12 118898471 118898783 -24887672 + AluY SINE Alu 1 311 0 1977 114 0 0 chr12 118898796 118899067 -24887388 + AluSx SINE Alu 3 273 -39 1514 166 3 46 chr12 118899112 118899251 -24887204 + AluJb SINE Alu 1 144 -168 1765 157 0 0 chr12 118899251 118899525 -24886930 + AluSx SINE Alu 1 274 -38 1514 166 3 46 chr12 118899525 118899687 -24886768 + AluJb SINE Alu 144 289 -23 1924 131 3 14 chr12 118899690 118899987 -24886468 + AluSx SINE Alu 1 294 -18 2074 109 7 0 chr12 118900168 118900461 -24885994 + AluSc SINE Alu 1 295 -14 1025 172 73 26 chr12 118900463 118900655 -24885800 + MER1B DNA MER1_type 44 244 -95 509 117 0 13 chr12 118900656 118900733 -24885722 - AluY SINE Alu -18 293 218 1968 121 31 7 chr12 118900869 118901159 -24885296 - AluSx SINE Alu -15 297 1 2024 81 9 81 chr12 118901231 118901551 -24884904 - AluSq SINE Alu -16 297 1 1884 111 0 0 chr12 118902340 118902602 -24883853 + AluSq SINE Alu 42 303 -10 1725 147 0 96 chr12 118902662 118902826 -24883629 + AluJo SINE Alu 1 118 -184 185 0 0 39 chr12 118902826 118902852 -24883603 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1725 147 0 96 chr12 118902852 118903021 -24883434 + AluJo SINE Alu 118 302 0 23 24 0 24 chr12 118903273 118903295 -24883160 + AT_rich Low_complexity Low_complexity 1 23 -17 770 174 8 0 chr12 118903295 118903427 -24883028 + FLAM_C SINE Alu 1 133 0 23 24 0 24 chr12 118903427 118903445 -24883010 + AT_rich Low_complexity Low_complexity 23 40 0 23 33 0 0 chr12 118903736 118903766 -24882689 + AT_rich Low_complexity Low_complexity 1 30 0 2170 98 0 3 chr12 118903910 118904205 -24882250 - AluSc SINE Alu -15 294 1 2167 109 3 0 chr12 118904205 118904506 -24881949 - AluSp SINE Alu -10 303 1 1457 142 0 0 chr12 118904641 118904860 -24881595 - AluSg/x SINE Alu -13 297 79 290 122 0 0 chr12 118904860 118904901 -24881554 - Alu SINE Alu -266 42 2 2240 89 3 0 chr12 118905197 118905488 -24880967 + AluSp SINE Alu 1 292 -21 424 238 22 3 chr12 118905755 118905879 -24880576 + AluJ/FLAM SINE Alu 1 75 -227 1970 129 3 0 chr12 118906093 118906380 -24880075 + AluSx SINE Alu 1 288 -24 518 287 13 19 chr12 118906779 118906936 -24879519 + MIR3 SINE MIR 50 205 -3 1747 151 0 20 chr12 118906976 118907268 -24879187 + AluJo SINE Alu 12 297 -15 276 330 11 0 chr12 118907534 118907622 -24878833 - L2 LINE L2 -32 3281 3193 920 171 0 12 chr12 118908758 118908928 -24877527 - AluJb SINE Alu -8 304 137 195 42 0 0 chr12 118909028 118909052 -24877403 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 508 245 38 0 chr12 118909062 118909168 -24877287 - L2 LINE L2 -23 3290 3181 470 189 20 153 chr12 118909360 118909556 -24876899 - L2 LINE L2 0 3313 3144 2152 100 0 7 chr12 118910340 118910650 -24875805 + AluSg1 SINE Alu 2 309 0 2040 102 0 0 chr12 118910872 118911146 -24875309 + AluSg SINE Alu 6 279 -31 2373 71 10 7 chr12 118911583 118911893 -24874562 - AluY SINE Alu 0 311 1 1105 164 0 5 chr12 118912589 118912778 -24873677 + AluSg/x SINE Alu 122 309 -3 1958 142 0 0 chr12 118912920 118913216 -24873239 + AluSx SINE Alu 2 297 -15 577 211 0 0 chr12 118913228 118913332 -24873123 + AluJ SINE Alu 2 105 -207 1570 151 11 4 chr12 118913333 118913598 -24872857 - AluJb SINE Alu -7 305 39 476 133 13 0 chr12 118913598 118913673 -24872782 - AluJ/FLAM SINE Alu -235 77 2 933 188 6 6 chr12 118913685 118913866 -24872589 + AluJ SINE Alu 112 292 -20 1164 189 57 4 chr12 118914014 118914242 -24872213 - L1MB7 LINE L1 -21 6163 5924 2336 87 3 0 chr12 118914874 118915186 -24871269 + AluSp SINE Alu 1 313 0 23 0 0 0 chr12 118915267 118915290 -24871165 + AT_rich Low_complexity Low_complexity 1 23 0 1848 140 3 3 chr12 118915901 118916193 -24870262 - AluSx SINE Alu -20 292 1 1574 134 0 0 chr12 118916691 118916937 -24869518 + AluJb SINE Alu 63 308 -4 394 291 48 0 chr12 118917123 118917226 -24869229 - L2 LINE L2 -14 3258 3151 800 179 0 0 chr12 118917705 118917828 -24868627 - FLAM_C SINE Alu -10 123 1 793 242 114 14 chr12 118917943 118918071 -24868384 + MIR SINE MIR 15 129 -133 1842 153 0 7 chr12 118918071 118918366 -24868089 - AluSx SINE Alu -19 293 1 793 242 114 14 chr12 118918366 118918456 -24867999 + MIR SINE MIR 129 255 -7 664 284 27 24 chr12 118919044 118919288 -24867167 + MIR SINE MIR 16 261 -1 2225 94 13 0 chr12 118919621 118919928 -24866527 + AluSp SINE Alu 1 311 -2 2229 103 0 0 chr12 118920027 118920328 -24866127 + AluSg SINE Alu 1 301 -9 180 0 0 0 chr12 118920337 118920357 -24866098 + (T)n Simple_repeat Simple_repeat 1 20 0 1700 136 3 63 chr12 118920578 118920753 -24865702 - AluSx SINE Alu -14 298 114 213 39 0 0 chr12 118920753 118920779 -24865676 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2112 65 3 24 chr12 118920779 118921069 -24865386 - AluY SINE Alu -27 284 1 2027 106 7 0 chr12 118921071 118921364 -24865091 - AluSx SINE Alu -17 295 1 1700 136 3 63 chr12 118921364 118921501 -24864954 - AluSx SINE Alu -198 114 1 228 191 180 67 chr12 118921758 118921847 -24864608 - MIR3 SINE MIR -27 181 83 2325 65 7 3 chr12 118922026 118922332 -24864123 + AluY SINE Alu 1 307 -4 265 174 181 107 chr12 118922373 118922522 -24863933 + MLT1H LTR MaLR 11 170 -379 1285 159 9 0 chr12 118922547 118922761 -24863694 + AluJb SINE Alu 75 290 -22 2003 139 0 0 chr12 118922761 118923056 -24863399 + AluSq SINE Alu 1 295 -18 259 234 53 43 chr12 118923069 118923163 -24863292 + MLT1H LTR MaLR 204 298 -251 1352 114 10 0 chr12 118923291 118923484 -24862971 - AluSp SINE Alu -17 296 102 1060 75 0 0 chr12 118923516 118923649 -24862806 - AluSp SINE Alu -180 133 1 370 179 32 63 chr12 118923650 118923745 -24862710 + MLT1H LTR MaLR 458 549 0 2287 58 6 35 chr12 118924166 118924477 -24861978 + AluY SINE Alu 1 302 -9 1643 163 22 56 chr12 118924509 118924828 -24861627 + AluJb SINE Alu 1 308 -4 2232 86 0 0 chr12 118925197 118925509 -24860946 + AluSg SINE Alu 2 313 0 1389 129 22 13 chr12 118925770 118925995 -24860460 + AluSg/x SINE Alu 70 296 -14 2240 89 17 0 chr12 118926955 118927246 -24859209 + AluSp SINE Alu 1 296 -17 680 128 10 0 chr12 118927386 118927488 -24858967 - AluSp SINE Alu -210 103 1 567 168 66 7 chr12 118927488 118927625 -24858830 + MLT1B LTR MaLR 81 225 -165 679 186 12 128 chr12 118927663 118927807 -24858648 - MLT1H LTR MaLR -228 321 215 2155 111 30 0 chr12 118927807 118928105 -24858350 + AluSx SINE Alu 2 308 -4 679 186 12 128 chr12 118928105 118928202 -24858253 - MLT1H LTR MaLR -334 215 108 306 174 174 10 chr12 118928264 118928362 -24858093 + L2 LINE L2 3043 3156 -157 276 130 0 0 chr12 118928480 118928526 -24857929 - FRAM/FAM SINE Alu -105 61 16 2132 127 7 0 chr12 118929137 118929444 -24857011 - AluSx SINE Alu -3 309 1 884 238 0 0 chr12 118929447 118929619 -24856836 - FAM SINE Alu -3 172 1 180 0 0 0 chr12 118929623 118929643 -24856812 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 181 397 71 7 chr12 118929902 118930043 -24856412 + L2 LINE L2 3121 3270 -2 491 202 0 0 chr12 118930914 118930998 -24855457 - AluJ/FLAM SINE Alu -228 84 1 496 189 0 54 chr12 118931578 118931631 -24854824 + U6 snRNA snRNA 1 46 -61 1168 151 198 35 chr12 118931631 118931750 -24854705 + AluSg SINE Alu 1 99 -201 215 61 30 0 chr12 118931750 118931783 -24854672 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1168 151 198 35 chr12 118931783 118931921 -24854534 + AluSg SINE Alu 99 300 0 496 189 0 54 chr12 118931921 118931978 -24854477 + U6 snRNA snRNA 46 105 -2 2014 148 0 7 chr12 118931991 118932289 -24854166 + AluJo SINE Alu 1 296 -16 1727 192 3 0 chr12 118932298 118932585 -24853870 + AluJo SINE Alu 1 288 -24 2603 47 0 0 chr12 118932994 118933291 -24853164 - AluY SINE Alu -14 297 1 574 246 89 11 chr12 118933787 118933978 -24852477 - MIR SINE MIR 0 262 57 1332 150 0 26 chr12 118933984 118934217 -24852238 - AluSg/x SINE Alu -1 309 83 520 127 0 0 chr12 118934217 118934288 -24852167 - AluSg1 SINE Alu -62 250 180 * 749 150 0 0 chr12 118934284 118934397 -24852058 - AluSg1 SINE Alu -196 113 1 624 282 51 43 chr12 118934450 118934705 -24851750 - MIR SINE MIR -5 257 1 680 173 93 120 chr12 118934940 118935103 -24851352 - MER20 DNA MER1_type 0 219 62 981 165 13 13 chr12 118935103 118935261 -24851194 + FRAM SINE Alu 2 159 -7 680 173 93 120 chr12 118935261 118935322 -24851133 - MER20 DNA MER1_type -157 62 1 707 125 0 111 chr12 118935913 118936057 -24850398 + AluJb SINE Alu 179 306 -6 186 133 0 0 chr12 118936929 118936959 -24849496 + (TA)n Simple_repeat Simple_repeat 1 30 0 2206 96 10 20 chr12 118936960 118937262 -24849193 - AluSg SINE Alu -11 299 1 203 49 98 24 chr12 118937720 118937761 -24848694 + CT-rich Low_complexity Low_complexity 5 48 0 2137 108 0 11 chr12 118937763 118938042 -24848413 - AluSx SINE Alu -36 276 1 2021 208 13 13 chr12 118938128 118938585 -24847870 + MER65C LTR ERV1 1 457 -4 21 82 0 0 chr12 118938727 118938776 -24847679 + AT_rich Low_complexity Low_complexity 1 49 0 1531 187 19 32 chr12 118938990 118939306 -24847149 - AluJo SINE Alu 0 312 1 957 244 90 71 chr12 118939588 118940515 -24845940 - L1ME3A LINE L1 -219 5951 5044 2000 149 0 32 chr12 118940515 118940830 -24845625 - AluJb SINE Alu -7 305 1 957 244 90 71 chr12 118940830 118940841 -24845614 - L1ME3A LINE L1 -1126 5044 5035 2155 94 22 0 chr12 118940841 118941116 -24845339 - AluSx SINE Alu -31 281 1 957 244 90 71 chr12 118941116 118941382 -24845073 - L1ME3A LINE L1 -1135 5035 4728 6630 74 33 2 chr12 118941382 118942252 -24844203 + MER11D LTR ERVK 1 897 0 957 244 90 71 chr12 118942252 118942327 -24844128 - L1ME3A LINE L1 -1442 4728 4656 320 253 11 0 chr12 118943643 118943738 -24842717 - L1ME3A LINE L1 -1476 4670 4575 2387 73 0 0 chr12 118944021 118944308 -24842147 + AluY SINE Alu 13 299 -12 2409 73 3 7 chr12 118945036 118945337 -24841118 - AluY SINE Alu -11 300 1 2544 70 0 0 chr12 118945338 118945639 -24840816 - AluSc SINE Alu -8 301 1 235 275 33 0 chr12 118945649 118945740 -24840715 - L1ME LINE L1 -224 5897 5804 326 291 82 0 chr12 118946167 118946277 -24840178 + MIR SINE MIR 46 164 -98 2480 71 0 0 chr12 118946308 118946604 -24839851 - AluY SINE Alu -15 296 1 486 191 48 48 chr12 118946614 118946761 -24839694 - L1MA10 LINE L1 0 6334 6188 925 297 44 57 chr12 118946775 118947496 -24838959 - L1ME LINE L1 -5285 785 74 2339 90 0 7 chr12 118947558 118947868 -24838587 - AluSg SINE Alu -2 308 1 2130 92 3 27 chr12 118947874 118948166 -24838289 - AluSc SINE Alu -24 285 1 242 65 0 43 chr12 118948178 118948224 -24838231 - L1MB3 LINE L1 -1 6182 6139 4914 174 65 28 chr12 118948230 118949053 -24837402 - L1MB3 LINE L1 -2 6181 5391 2214 113 0 17 chr12 118949053 118949355 -24837100 - AluSx SINE Alu -15 297 1 4914 174 65 28 chr12 118949355 118949754 -24836701 - L1MB3 LINE L1 -792 5391 5009 2014 152 3 0 chr12 118949754 118950050 -24836405 - AluJo SINE Alu -15 297 1 4914 174 65 28 chr12 118950050 118950198 -24836257 - L1MB3 LINE L1 -1174 5009 4868 1960 166 0 10 chr12 118950198 118950499 -24835956 - AluJb SINE Alu -9 303 6 4914 174 65 28 chr12 118950499 118950681 -24835774 - L1MB3 LINE L1 -1315 4868 4694 1925 132 7 30 chr12 118950681 118950984 -24835471 + AluJo SINE Alu 1 296 -16 4914 174 65 28 chr12 118950984 118951273 -24835182 - L1MB3 LINE L1 -1489 4694 4417 222 37 0 0 chr12 118951273 118951300 -24835155 + (TG)n Simple_repeat Simple_repeat 2 28 0 4914 174 65 28 chr12 118951300 118951515 -24834940 - L1MB3 LINE L1 -1766 4417 4029 1313 108 5 9 chr12 118951737 118951951 -24834504 - L1MA2 LINE L1 0 6304 6092 2232 95 19 71 chr12 118951951 118952371 -24834084 - L1MA2 LINE L1 -126 6178 5781 2271 177 24 43 chr12 118952371 118952948 -24833507 - L1MB3 LINE L1 -2140 4006 3441 1465 141 55 79 chr12 118952952 118953117 -24833338 - AluJo SINE Alu 0 311 155 2207 108 7 20 chr12 118953117 118953422 -24833033 - AluSx SINE Alu -11 301 1 1465 141 55 79 chr12 118953422 118953574 -24832881 - AluJo SINE Alu -156 155 1 1346 289 62 72 chr12 118953574 118953920 -24832535 - L1M4 LINE L1 -5605 937 589 225 0 0 0 chr12 118953920 118953945 -24832510 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 3371 120 10 31 chr12 118953951 118953977 -24832478 - L1MA8 LINE L1 -11 6280 6255 2117 122 3 3 chr12 118953977 118954273 -24832182 + AluSx SINE Alu 1 296 -16 3371 120 10 31 chr12 118954273 118954831 -24831624 - L1MA8 LINE L1 -36 6255 5708 1346 289 62 72 chr12 118954831 118955422 -24831033 - L1M4 LINE L1 -5958 584 2 252 100 250 0 chr12 118955434 118955494 -24830961 - L1MA10 LINE L1 -1 6333 6259 1931 147 31 0 chr12 118955494 118955786 -24830669 - AluJb SINE Alu -11 301 1 4563 168 71 13 chr12 118955822 118956966 -24829489 - L1MC2 LINE L1 -1 6761 5553 1969 178 87 23 chr12 118956942 118957425 -24829030 - L1MB5 LINE L1 0 6592 6079 * 834 191 65 17 chr12 118957477 118957708 -24828747 - L1MC2 LINE L1 -1069 5495 5254 * 4071 199 168 30 chr12 118957701 118957716 -24828739 - L1MC2 LINE L1 -3834 2730 2718 1743 177 25 30 chr12 118957716 118958083 -24828372 - MLT1A1 LTR MaLR 0 365 1 4071 199 168 30 chr12 118958083 118958163 -24828292 - L1MC2 LINE L1 -3846 2718 2650 2336 76 14 3 chr12 118958163 118958452 -24828003 - AluSg SINE Alu -12 298 7 4071 199 168 30 chr12 118958452 118959091 -24827364 - L1MC2 LINE L1 -3914 2650 2101 573 83 36 0 chr12 118959091 118959175 -24827280 - L1MB5 LINE L1 -8 6166 6080 4071 199 168 30 chr12 118959175 118960058 -24826397 - L1MC2 LINE L1 -4463 2101 894 777 61 20 0 chr12 118960069 118960199 -24826256 - AluSp/q SINE Alu 0 313 182 1394 236 35 42 chr12 118960199 118960324 -24826131 - L1MC2 LINE L1 -5164 881 757 1817 103 4 30 chr12 118960324 118960586 -24825869 + AluSg SINE Alu 53 307 -3 1394 236 35 42 chr12 118960586 118960893 -24825562 - L1MC2 LINE L1 -5288 757 452 363 229 0 12 chr12 118960891 118960974 -24825481 - L1MC2 LINE L1 -6325 239 158 * 3165 210 31 53 chr12 118960984 118961122 -24825333 - L1MEc LINE L1 -1379 4836 4697 1636 173 0 37 chr12 118961122 118961422 -24825033 + AluJo SINE Alu 1 289 -23 3165 210 31 53 chr12 118961422 118961895 -24824560 - L1MEc LINE L1 -1518 4697 4253 2124 112 9 47 chr12 118961895 118962217 -24824238 - AluSx SINE Alu -2 310 1 3165 210 31 53 chr12 118962217 118962628 -24823827 - L1MEc LINE L1 -1962 4253 3835 1525 124 146 11 chr12 118962633 118962908 -24823547 - AluSq SINE Alu -1 312 1 597 200 139 0 chr12 118962908 118963073 -24823382 - L1MEc LINE L1 -2994 3221 3034 451 175 144 10 chr12 118963090 118963187 -24823268 - FLAM_A SINE Alu -21 121 12 1898 195 92 39 chr12 118963190 118963414 -24823041 - L1MEc LINE L1 -3163 3052 2841 1911 107 0 11 chr12 118963414 118963675 -24822780 - AluSc SINE Alu -6 303 46 2159 123 10 3 chr12 118963678 118963980 -24822475 - AluSx SINE Alu -7 305 2 1898 195 92 39 chr12 118963980 118964412 -24822043 - L1MEc LINE L1 -3375 2840 2357 1519 193 20 20 chr12 118964481 118964781 -24821674 - AluJo SINE Alu -8 304 5 2439 256 80 33 chr12 118964785 118965686 -24820769 - L1MEc LINE L1 -4003 2393 1536 2357 75 0 20 chr12 118965686 118965991 -24820464 + AluY SINE Alu 1 299 -12 2439 256 80 33 chr12 118965991 118966266 -24820189 - L1MEc LINE L1 -4860 1536 1152 1924 135 3 55 chr12 118966266 118966593 -24819862 - AluSx SINE Alu -2 310 1 2439 256 80 33 chr12 118966593 118966679 -24819776 - L1MEc LINE L1 -5244 1152 1071 2092 112 3 10 chr12 118966698 118967003 -24819452 + AluSx SINE Alu 1 303 -9 945 147 33 71 chr12 118967003 118967187 -24819268 + AluSg/x SINE Alu 134 310 -2 2360 90 3 0 chr12 118967239 118967539 -24818916 - AluSp SINE Alu -12 301 1 2312 110 7 0 chr12 118967555 118967865 -24818590 - AluSx SINE Alu 0 312 1 3066 258 24 24 chr12 118967904 118968864 -24817591 - L1MEc LINE L1 -5428 968 9 27 73 0 0 chr12 118969039 118969094 -24817361 + AT_rich Low_complexity Low_complexity 1 55 0 209 369 66 16 chr12 118969275 118969397 -24817058 + MIR SINE MIR 17 144 -64 2230 123 3 0 chr12 118970252 118970553 -24815902 - AluSx SINE Alu -10 302 1 1910 146 3 37 chr12 118970612 118970935 -24815520 - AluSx SINE Alu 0 312 1 1831 171 0 20 chr12 118971586 118971890 -24814565 + AluJo SINE Alu 3 300 -12 2378 84 0 10 chr12 118972120 118972419 -24814036 - AluSc SINE Alu -13 296 1 20945 86 9 7 chr12 118972765 118976056 -24810399 - L1PA7 LINE L1 -16 6138 2851 2441 83 0 10 chr12 118976056 118976370 -24810085 - AluY SINE Alu 0 311 1 20945 86 9 7 chr12 118976370 118978283 -24808172 - L1PA7 LINE L1 -3303 2851 942 6505 87 20 34 chr12 118978283 118980089 -24806366 - SVA Other Other -553 1386 12 2426 124 32 3 chr12 118980567 118980905 -24805550 - MER7A DNA MER2_type 0 346 1 1120 213 54 1 chr12 118981238 118981671 -24804784 - LTR22 LTR ERVK 0 509 10 429 247 74 62 chr12 118981940 118982102 -24804353 + MIR SINE MIR 47 210 -52 2439 137 84 12 chr12 118982755 118983170 -24803285 - MER65A LTR ERV1 0 445 1 2621 208 50 48 chr12 118983170 118983668 -24802787 - MER65A-int LTR ERV1 0 4871 4369 3837 59 20 0 chr12 118983668 118984112 -24802343 - MLT2A2 LTR ERVL 0 453 1 2621 208 50 48 chr12 118984112 118984306 -24802149 - MER65A-int LTR ERV1 -502 4369 4177 2134 111 0 4 chr12 118984331 118984636 -24801819 - AluSc SINE Alu 0 304 1 6698 90 12 3 chr12 118984752 118986089 -24800366 - L1PA13 LINE L1 -2 6161 4804 2393 247 20 21 chr12 118986109 118986422 -24800033 - MER65A-int LTR ERV1 -545 4391 4079 2070 123 3 14 chr12 118986422 118986750 -24799705 - AluSx SINE Alu 0 312 1 2393 247 20 21 chr12 118986750 118987081 -24799374 - MER65A-int LTR ERV1 -857 4079 3519 1089 224 9 22 chr12 118987107 118987425 -24799030 - MER65A-int LTR ERV1 -1144 3792 3078 1396 162 35 121 chr12 118987428 118987646 -24798809 - AluJo SINE Alu -1 311 131 180 0 0 0 chr12 118987646 118987666 -24798789 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1396 162 35 121 chr12 118987666 118987787 -24798668 - AluJo SINE Alu -181 131 1 22 0 0 0 chr12 118987857 118987879 -24798576 + AT_rich Low_complexity Low_complexity 1 22 0 255 326 34 0 chr12 118988094 118988183 -24798272 - L2 LINE L2 -15 3257 3166 1781 192 116 80 chr12 118988662 118989653 -24796802 - MER4-int LTR ERV1 -1438 4757 3803 944 59 59 30 chr12 118989653 118989788 -24796667 + MER85 DNA T2_type 1 139 0 1781 192 116 80 chr12 118989788 118989831 -24796624 - MER4-int LTR ERV1 -2392 3803 2477 3301 113 55 10 chr12 118989887 118990376 -24796079 + MER9 LTR ERVK 1 511 0 441 158 11 53 chr12 118990412 118990507 -24795948 - MER4-int LTR ERV1 -2866 3732 3642 1740 107 30 15 chr12 118990564 118990826 -24795629 - MER47A DNA MER2_type -100 266 1 1972 78 0 4 chr12 118991211 118991456 -24794999 - AluSg/x SINE Alu -1 309 66 1144 134 6 0 chr12 118991488 118991659 -24794796 - AluSg/x SINE Alu -9 301 130 1036 279 88 20 chr12 118991659 118992068 -24794387 - L1MEc LINE L1 -5712 684 248 965 106 23 0 chr12 118992073 118992205 -24794250 - AluSc SINE Alu -174 135 1 633 272 24 19 chr12 118992223 118992429 -24794026 - L1MEc LINE L1 -6168 228 22 2149 112 0 10 chr12 118992747 118993052 -24793403 + AluSq SINE Alu 1 302 -11 1465 158 142 11 chr12 118993360 118993620 -24792835 + AluJb SINE Alu 1 294 -8 375 89 0 0 chr12 118993769 118993825 -24792630 + (CA)n Simple_repeat Simple_repeat 1 56 0 332 233 6 183 chr12 118993919 118994012 -24792443 + MIR3 SINE MIR 58 166 -42 2427 80 0 6 chr12 118994012 118994324 -24792131 + AluY SINE Alu 1 310 -1 332 233 6 183 chr12 118994324 118994346 -24792109 + MIR3 SINE MIR 166 133 -75 2369 107 3 0 chr12 118994346 118994656 -24791799 + AluSp SINE Alu 1 311 -2 332 233 6 183 chr12 118994656 118994719 -24791736 + MIR3 SINE MIR 132 205 -3 855 198 83 0 chr12 118994940 118995132 -24791323 + MER3 DNA MER1_type 2 209 0 2269 108 0 0 chr12 118995193 118995488 -24790967 - AluSc SINE Alu -14 295 1 233 119 0 0 chr12 118996021 118996063 -24790392 - LTR66 LTR ERVL -171 439 398 * 245 130 0 0 chr12 118996029 118996075 -24790380 + LTR66 LTR ERVL 394 439 -171 210 191 0 0 chr12 118996075 118996117 -24790338 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 640 182 0 0 chr12 118996127 118996226 -24790229 + AluJb SINE Alu 207 305 -7 251 224 0 0 chr12 118996247 118996305 -24790150 + (TA)n Simple_repeat Simple_repeat 1 58 0 2235 115 0 0 chr12 118996305 118996593 -24789862 - AluSx SINE Alu -24 288 1 501 17 0 0 chr12 118996645 118996703 -24789752 + (CA)n Simple_repeat Simple_repeat 1 58 0 1681 155 3 92 chr12 118996733 118997068 -24789387 - AluJo SINE Alu -7 305 1 2281 113 0 0 chr12 118997111 118997411 -24789044 - AluSc SINE Alu -9 300 1 312 360 7 27 chr12 118998616 118998766 -24787689 + MIR3 SINE MIR 45 191 -17 23 33 0 0 chr12 119000251 119000281 -24786174 + AT_rich Low_complexity Low_complexity 1 30 0 1864 148 22 0 chr12 119000645 119000922 -24785533 + AluSx SINE Alu 3 285 -27 432 0 0 0 chr12 119000922 119000970 -24785485 + (CA)n Simple_repeat Simple_repeat 2 49 0 2160 113 3 10 chr12 119001187 119001487 -24784968 + AluSx SINE Alu 1 298 -14 2191 107 10 0 chr12 119001803 119002102 -24784353 - AluSg SINE Alu -6 304 3 2467 71 0 26 chr12 119002788 119003097 -24783358 + AluY SINE Alu 1 301 -10 2433 90 0 0 chr12 119003326 119003625 -24782830 - AluSx SINE Alu -13 299 1 413 146 12 37 chr12 119005719 119005801 -24780654 - MER116 DNA Mariner 0 80 1 2219 94 7 7 chr12 119006584 119006881 -24779574 - AluSx SINE Alu -11 301 5 1073 82 11 28 chr12 119006913 119007095 -24779360 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2293 123 0 0 chr12 119007095 119007405 -24779050 - AluSq SINE Alu -3 310 1 834 80 0 0 chr12 119009181 119009281 -24777174 - AluS SINE Alu -213 100 1 1715 187 0 32 chr12 119009630 119009945 -24776510 + AluJo SINE Alu 1 305 -7 2265 99 0 3 chr12 119010305 119010608 -24775847 - AluSx SINE Alu -10 302 1 8916 195 56 30 chr12 119011380 119012188 -24774267 - L1MC2 LINE L1 -49 6295 5509 2152 109 3 13 chr12 119012188 119012500 -24773955 - AluSc SINE Alu 0 309 1 8916 195 56 30 chr12 119012500 119012841 -24773614 - L1MC2 LINE L1 -835 5509 5178 1594 155 0 19 chr12 119012841 119013105 -24773350 + AluJb SINE Alu 1 259 -53 8916 195 56 30 chr12 119013105 119014608 -24771847 - L1MC2 LINE L1 -1166 5178 3546 2264 126 0 0 chr12 119014608 119014917 -24771538 - AluSg SINE Alu -1 309 1 8916 195 56 30 chr12 119014917 119015603 -24770852 - L1MC2 LINE L1 -2798 3546 2879 1286 131 40 0 chr12 119015643 119015841 -24770614 - AluJo SINE Alu -106 206 1 425 202 21 0 chr12 119015841 119015935 -24770520 - L1MC2 LINE L1 -3251 2895 2800 244 169 62 0 chr12 119015955 119016020 -24770435 - L1MB2 LINE L1 0 6171 6103 713 199 41 18 chr12 119016040 119016211 -24770244 - L1MC2 LINE L1 -3328 2818 2644 809 133 7 22 chr12 119016268 119016403 -24770052 - AluJb SINE Alu -179 133 1 23 33 0 0 chr12 119016608 119016638 -24769817 + AT_rich Low_complexity Low_complexity 1 30 0 2428 90 0 6 chr12 119016770 119017081 -24769374 - AluY SINE Alu 0 311 3 1495 177 15 0 chr12 119017083 119017349 -24769106 - AluSx SINE Alu 0 312 43 279 0 0 0 chr12 119017363 119017394 -24769061 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2067 128 4 0 chr12 119017396 119017677 -24768778 - AluSx SINE Alu -30 282 1 807 184 64 0 chr12 119017752 119017772 -24768683 - AluJo SINE Alu -161 151 134 279 0 0 0 chr12 119017772 119017803 -24768652 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 807 184 64 0 chr12 119017803 119017923 -24768532 - AluJo SINE Alu -178 134 2 23 0 0 0 chr12 119018137 119018160 -24768295 + AT_rich Low_complexity Low_complexity 1 23 0 2224 122 0 0 chr12 119018390 119018686 -24767769 + AluSx SINE Alu 1 296 -16 2225 78 0 14 chr12 119018838 119019155 -24767300 + AluY SINE Alu 9 321 0 968 75 23 0 chr12 119019247 119019380 -24767075 - AluSg/x SINE Alu 0 312 177 1783 94 13 4 chr12 119019380 119019614 -24766841 - AluSc SINE Alu -73 236 1 2930 218 18 30 chr12 119019642 119019844 -24766611 + L1M4 LINE L1 3286 3489 -2657 2346 81 37 0 chr12 119019844 119020141 -24766314 + AluSp SINE Alu 2 309 -4 2930 218 18 30 chr12 119020141 119020730 -24765725 + L1M4 LINE L1 3489 4067 -2079 1413 212 102 39 chr12 119020729 119021238 -24765217 + L1M4 LINE L1 4292 4832 -1314 * 2456 74 0 0 chr12 119021268 119021564 -24764891 - AluY SINE Alu -15 296 1 1609 182 53 59 chr12 119021565 119021624 -24764831 - L1MB8 LINE L1 -301 5877 5819 1717 150 0 86 chr12 119021624 119021654 -24764801 - AluJo SINE Alu -13 299 268 2371 73 7 13 chr12 119021654 119021954 -24764501 + AluY SINE Alu 1 298 -13 1717 150 0 86 chr12 119021954 119022048 -24764407 - AluJo SINE Alu -44 268 168 2341 99 0 13 chr12 119022048 119022352 -24764103 + AluSx SINE Alu 1 300 -12 1717 150 0 86 chr12 119022352 119022553 -24763902 - AluJo SINE Alu -144 168 1 1609 182 53 59 chr12 119022553 119022867 -24763588 - L1MB8 LINE L1 -359 5819 5506 1697 178 10 16 chr12 119023003 119023312 -24763143 - AluJb SINE Alu -5 307 1 348 135 0 0 chr12 119023314 119023366 -24763089 + MER63 DNA MER1_type 676 727 -333 819 161 31 8 chr12 119024619 119024749 -24761706 + FLAM_C SINE Alu 2 134 -9 594 202 91 0 chr12 119024758 119024857 -24761598 + FRAM SINE Alu 39 146 -30 3949 92 13 0 chr12 119024904 119025425 -24761030 - L1MA2 LINE L1 0 6304 5777 1342 181 0 5 chr12 119025425 119025646 -24760809 - AluJb SINE Alu -92 220 1 10153 127 35 37 chr12 119025646 119026109 -24760346 - L1M1 LINE L1 -524 7199 6737 2470 65 3 0 chr12 119026109 119026401 -24760054 - AluY SINE Alu -18 293 1 10153 127 35 37 chr12 119026401 119028209 -24758246 - L1M1 LINE L1 -986 6737 4936 2461 93 0 3 chr12 119028210 119028520 -24757935 - AluSp SINE Alu -4 309 1 20299 123 29 43 chr12 119028520 119028807 -24757648 - L1M1 LINE L1 -3854 3711 3422 2130 123 0 0 chr12 119028807 119029092 -24757363 + AluSx SINE Alu 1 285 -27 20299 123 29 43 chr12 119029092 119032215 -24754240 - L1M1 LINE L1 -4143 3422 344 499 162 36 18 chr12 119032215 119032326 -24754129 - L1M1 LINE L1 -7435 130 18 22 0 0 0 chr12 119032336 119032358 -24754097 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 119032659 119032680 -24753775 + AT_rich Low_complexity Low_complexity 1 21 0 305 290 166 30 chr12 119032719 119032888 -24753567 + MIR SINE MIR 48 239 -23 1755 168 3 30 chr12 119032889 119033192 -24753263 - AluJo SINE Alu -17 295 1 29 0 0 0 chr12 119033302 119033331 -24753124 + AT_rich Low_complexity Low_complexity 1 29 0 2145 135 0 3 chr12 119033351 119033662 -24752793 - AluSx SINE Alu -2 310 1 1928 102 34 0 chr12 119033844 119034109 -24752346 + AluSg SINE Alu 35 308 -2 29 70 0 0 chr12 119034681 119034738 -24751717 + AT_rich Low_complexity Low_complexity 1 57 0 324 188 0 0 chr12 119034890 119034954 -24751501 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chr12 119035074 119035095 -24751360 + AT_rich Low_complexity Low_complexity 1 21 0 2325 86 0 0 chr12 119038117 119038407 -24748048 + AluSx SINE Alu 3 292 -20 708 191 0 0 chr12 119039325 119039440 -24747015 + FLAM_A SINE Alu 1 115 -18 2255 108 0 10 chr12 119039440 119039737 -24746718 - AluSx SINE Alu -18 294 1 2239 90 0 0 chr12 119040755 119041034 -24745421 + AluSg SINE Alu 1 279 -31 2507 65 0 16 chr12 119041183 119041491 -24744964 + AluY SINE Alu 1 303 -8 255 61 0 0 chr12 119041791 119041824 -24744631 + (CA)n Simple_repeat Simple_repeat 1 33 0 2136 92 40 0 chr12 119042252 119042556 -24743899 + AluSq SINE Alu 1 315 0 2332 107 0 0 chr12 119042568 119042877 -24743578 + AluSq SINE Alu 1 309 -4 23 97 0 0 chr12 119043432 119043504 -24742951 + AT_rich Low_complexity Low_complexity 1 72 0 2528 212 96 50 chr12 119043843 119044756 -24741699 + L1ME3A LINE L1 5203 6156 -14 2250 94 0 44 chr12 119044757 119045077 -24741378 - AluY SINE Alu -5 306 1 2006 123 0 27 chr12 119045187 119045514 -24740941 + AluSx SINE Alu 1 319 0 2246 110 0 0 chr12 119045631 119045921 -24740534 + AluSx SINE Alu 1 290 -22 208 229 0 0 chr12 119047512 119047560 -24738895 + (CA)n Simple_repeat Simple_repeat 1 48 0 369 0 0 0 chr12 119048733 119048774 -24737681 + (TG)n Simple_repeat Simple_repeat 2 42 0 2106 114 7 10 chr12 119048909 119049199 -24737256 - AluSx SINE Alu -23 289 1 2123 112 0 0 chr12 119052078 119052363 -24734092 + AluSx SINE Alu 1 285 -27 2318 92 0 29 chr12 119053183 119053498 -24732957 - AluSg SINE Alu -4 306 1 2396 68 0 3 chr12 119054198 119054490 -24731965 - AluSc SINE Alu -18 291 1 2422 86 0 3 chr12 119054883 119055185 -24731270 + AluSx SINE Alu 1 301 -11 2324 110 0 0 chr12 119055215 119055516 -24730939 + AluSx SINE Alu 1 301 -11 200 184 20 41 chr12 119055549 119055598 -24730857 - MIR SINE MIR -6 256 209 2394 90 7 0 chr12 119056901 119057201 -24729254 + AluSq SINE Alu 1 302 -11 3482 189 28 71 chr12 119057270 119057870 -24728585 + L1MC/D LINE L1 4348 4894 -1252 2236 79 7 0 chr12 119057870 119058190 -24728265 + AluY SINE Alu 1 322 0 3482 189 28 71 chr12 119058190 119058545 -24727910 + L1MC/D LINE L1 4894 5263 -883 1855 155 0 36 chr12 119058597 119058906 -24727549 + AluJb SINE Alu 1 298 -14 1020 200 10 58 chr12 119058914 119059209 -24727246 + L1MC/D LINE L1 5258 5538 -806 2228 99 7 7 chr12 119059270 119059563 -24726892 + AluSx SINE Alu 1 293 -19 1208 181 25 4 chr12 119059566 119059804 -24726651 + L1M2 LINE L1 5417 5659 -653 226 234 100 115 chr12 119059837 119060106 -24726349 + L1M4 LINE L1 1442 1706 -4836 1032 79 0 84 chr12 119060110 119060288 -24726167 - L1PA15 LINE L1 -2 6163 6001 854 288 28 34 chr12 119060341 119060362 -24726093 + L1ME1 LINE L1 91 111 -6312 2219 109 3 3 chr12 119060362 119060665 -24725790 - AluSx SINE Alu -9 303 1 854 288 28 34 chr12 119060665 119060970 -24725485 + L1ME1 LINE L1 111 415 -6008 * 868 252 70 105 chr12 119060960 119061389 -24725066 + L1ME1 LINE L1 847 1260 -5163 2544 189 80 77 chr12 119061413 119061512 -24724943 + L1ME1 LINE L1 5028 5125 -1816 2466 69 0 10 chr12 119061512 119061815 -24724640 + AluY SINE Alu 1 300 -11 2544 189 80 77 chr12 119061815 119061826 -24724629 + L1ME1 LINE L1 5125 5134 -1807 2281 91 29 13 chr12 119061826 119062133 -24724322 + AluSq SINE Alu 1 312 -1 2544 189 80 77 chr12 119062133 119062180 -24724275 + L1ME1 LINE L1 5134 5179 -1762 2210 118 0 0 chr12 119062180 119062476 -24723979 - AluSq SINE Alu -17 296 1 2544 189 80 77 chr12 119062476 119062946 -24723509 + L1ME1 LINE L1 5179 5665 -1276 2206 80 7 14 chr12 119062946 119063256 -24723199 + AluSq SINE Alu 1 308 0 2544 189 80 77 chr12 119063256 119063617 -24722838 + L1ME1 LINE L1 5665 6023 -918 2075 176 151 0 chr12 119063628 119064059 -24722396 + MLT1D LTR MaLR 1 496 -9 1786 219 112 38 chr12 119064062 119064903 -24721552 + L1ME1 LINE L1 6029 6956 -5 2148 122 0 10 chr12 119064919 119065230 -24721225 - AluY SINE Alu -3 308 1 204 97 0 0 chr12 119067866 119067897 -24718558 + (A)n Simple_repeat Simple_repeat 1 31 0 351 291 19 32 chr12 119068612 119068770 -24717685 + L1MC5 LINE L1 7770 7925 -36 199 174 0 58 chr12 119068770 119068839 -24717616 + GA-rich Low_complexity Low_complexity 1 65 0 1962 134 17 13 chr12 119069363 119069661 -24716794 + AluJb SINE Alu 3 301 -11 2288 89 28 0 chr12 119069687 119069978 -24716477 + AluSp SINE Alu 1 299 -14 2423 89 0 0 chr12 119070730 119071033 -24715422 - AluSc SINE Alu -6 303 1 1771 86 0 5 chr12 119072102 119072323 -24714132 + AluSc SINE Alu 14 233 -76 1508 168 0 24 chr12 119072332 119072582 -24713873 - AluJo SINE Alu -48 264 21 2290 94 7 0 chr12 119072685 119072982 -24713473 + AluSp SINE Alu 2 300 -13 183 296 136 8 chr12 119073316 119073441 -24713014 - MIR3 SINE MIR -24 184 44 2200 101 31 0 chr12 119073883 119074170 -24712285 - AluSx SINE Alu -16 296 1 1011 206 11 0 chr12 119074689 119074873 -24711582 + MER58A DNA MER1_type 30 215 -9 202 274 0 118 chr12 119074898 119074963 -24711492 - MER5B DNA MER1_type -3 175 133 2368 91 10 0 chr12 119074963 119075270 -24711185 + AluSg SINE Alu 1 310 0 202 274 0 118 chr12 119075270 119075339 -24711116 - MER5B DNA MER1_type -45 133 57 1902 92 8 0 chr12 119075421 119075670 -24710785 - AluSq SINE Alu -20 293 43 272 85 0 85 chr12 119076331 119076378 -24710077 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 232 221 29 44 chr12 119076396 119076464 -24709991 + L1M4 LINE L1 822 888 -5654 1092 96 0 0 chr12 119076504 119076640 -24709815 - AluSp/q SINE Alu -16 297 162 2437 90 3 0 chr12 119076641 119076951 -24709504 + AluSq SINE Alu 2 312 -1 23 0 0 53 chr12 119077005 119077025 -24709430 + AT_rich Low_complexity Low_complexity 1 20 -16 2064 92 51 0 chr12 119077025 119077298 -24709157 + AluSg SINE Alu 1 287 -23 23 0 0 53 chr12 119077298 119077315 -24709140 + AT_rich Low_complexity Low_complexity 20 36 0 2027 271 100 27 chr12 119077315 119077748 -24708707 + L1M4 LINE L1 893 1293 -5351 2203 100 3 0 chr12 119077748 119078048 -24708407 + AluSg SINE Alu 1 301 -9 2027 271 100 27 chr12 119078048 119078384 -24708071 + L1M4 LINE L1 1293 1603 -5041 1836 148 0 28 chr12 119078384 119078671 -24707784 + AluJb SINE Alu 1 280 -32 219 36 0 0 chr12 119078671 119078699 -24707756 + (CA)n Simple_repeat Simple_repeat 1 28 0 1836 148 0 28 chr12 119078699 119078728 -24707727 + AluJb SINE Alu 280 308 -4 2027 271 100 27 chr12 119078728 119079035 -24707420 + L1M4 LINE L1 1603 1886 -4758 1996 112 0 40 chr12 119079035 119079356 -24707099 + AluSx SINE Alu 1 308 -4 2027 271 100 27 chr12 119079356 119079429 -24707026 + L1M4 LINE L1 1886 2170 -4474 305 261 65 33 chr12 119079451 119079604 -24706851 + L1M4 LINE L1 2330 2487 -4338 259 267 16 91 chr12 119079644 119079882 -24706573 + L1MEc LINE L1 1735 1945 -4451 2131 129 0 3 chr12 119079882 119080193 -24706262 + AluSx SINE Alu 1 310 -2 259 267 16 91 chr12 119080193 119080272 -24706183 + L1MEc LINE L1 1945 2028 -4368 2198 245 46 64 chr12 119080290 119080434 -24706021 + L1MEc LINE L1 2787 2932 -3283 2308 92 3 0 chr12 119080434 119080739 -24705716 + AluSp SINE Alu 1 306 -7 2198 245 46 64 chr12 119080739 119080751 -24705704 + L1MEc LINE L1 2932 2943 -3272 2151 107 3 0 chr12 119080751 119081042 -24705413 - AluSg SINE Alu -18 292 1 2198 245 46 64 chr12 119081042 119081719 -24704736 + L1MEc LINE L1 2943 3631 -2584 1126 173 28 23 chr12 119081719 119081933 -24704522 - MER20 DNA MER1_type -2 217 3 2198 245 46 64 chr12 119081933 119081960 -24704495 + L1MEc LINE L1 3631 3657 -2558 373 157 0 0 chr12 119081960 119082011 -24704444 - Alu SINE Alu -249 52 2 2198 245 46 64 chr12 119082011 119082050 -24704405 + L1MEc LINE L1 3657 3695 -2520 2186 96 3 16 chr12 119082050 119082363 -24704092 + AluSc SINE Alu 1 309 0 2198 245 46 64 chr12 119082363 119082744 -24703711 + L1MEc LINE L1 3695 4023 -2192 2105 112 0 0 chr12 119082754 119083048 -24703407 + AluSx SINE Alu 1 294 -18 791 239 98 14 chr12 119083053 119083203 -24703252 + L1MEc LINE L1 4292 4428 -1787 2033 91 0 25 chr12 119083203 119083489 -24702966 - AluY SINE Alu -16 295 17 791 239 98 14 chr12 119083489 119083515 -24702940 + L1MEc LINE L1 4428 4450 -1765 2040 134 0 0 chr12 119083515 119083813 -24702642 + AluSx SINE Alu 1 298 -14 791 239 98 14 chr12 119083813 119083932 -24702523 + L1MEc LINE L1 4450 4613 -1602 7138 138 52 13 chr12 119083934 119084963 -24701492 - Tigger2 DNA MER2_type -3 2715 1633 1879 143 0 0 chr12 119084963 119085250 -24701205 + AluSx SINE Alu 1 287 -25 7138 138 52 13 chr12 119085250 119085390 -24701065 - Tigger2 DNA MER2_type -1085 1633 1500 2257 79 7 0 chr12 119085391 119085694 -24700761 + AluSx SINE Alu 1 305 -7 3828 106 41 3 chr12 119085695 119086261 -24700194 - Tigger2 DNA MER2_type -1281 1437 851 2079 113 0 0 chr12 119086262 119086554 -24699901 + AluSg SINE Alu 1 292 -18 1408 203 16 32 chr12 119086567 119086878 -24699577 + AluJo SINE Alu 3 308 -4 859 123 20 0 chr12 119086880 119087026 -24699429 + L1ME1 LINE L1 5133 5281 -865 2043 115 6 34 chr12 119087027 119087348 -24699107 + AluSq SINE Alu 1 312 -1 676 120 0 0 chr12 119087367 119087490 -24698965 + FLAM_C SINE Alu 25 147 0 2697 218 80 51 chr12 119087491 119087525 -24698930 + L1ME1 LINE L1 5280 5312 -852 1868 100 3 106 chr12 119087525 119087854 -24698601 + AluSx SINE Alu 1 295 -17 2697 218 80 51 chr12 119087854 119087878 -24698577 + L1ME1 LINE L1 5312 5334 -830 2165 97 10 0 chr12 119087878 119088176 -24698279 + AluSx SINE Alu 1 301 -11 2697 218 80 51 chr12 119088176 119088943 -24697512 + L1ME1 LINE L1 5334 6130 -34 21 0 0 0 chr12 119088978 119088999 -24697456 + AT_rich Low_complexity Low_complexity 1 21 0 1985 116 10 20 chr12 119089227 119089529 -24696926 - AluSx SINE Alu -13 299 1 543 178 30 0 chr12 119089554 119089655 -24696800 - Tigger7 DNA MER2_type 0 2487 2384 * 1201 201 68 36 chr12 119089648 119089792 -24696663 - Tigger7 DNA MER2_type -470 263 106 2201 95 7 10 chr12 119089792 119090098 -24696357 + AluSg SINE Alu 1 305 -5 1201 201 68 36 chr12 119090098 119090202 -24696253 - Tigger7 DNA MER2_type -627 106 7 436 204 28 161 chr12 119090620 119090659 -24695796 - MIR SINE MIR -6 256 213 2162 93 0 3 chr12 119090659 119090949 -24695506 - AluSx SINE Alu -23 289 1 436 204 28 161 chr12 119090949 119091120 -24695335 - MIR SINE MIR -49 213 74 1472 140 0 102 chr12 119091133 119091455 -24695000 + AluYa8 SINE Alu 1 289 -21 743 256 134 0 chr12 119091546 119091871 -24694584 + L2 LINE L2 2716 3085 -228 255 275 99 44 chr12 119091910 119092001 -24694454 + L2 LINE L2 3188 3283 -30 1998 115 0 19 chr12 119092098 119092411 -24694044 + AluSc SINE Alu 1 307 -2 2234 70 0 32 chr12 119092467 119092782 -24693673 + AluY SINE Alu 1 305 -6 203 133 0 0 chr12 119094044 119094074 -24692381 + (CGG)n Simple_repeat Simple_repeat 2 31 0 215 262 12 0 chr12 119094254 119094338 -24692117 + (CCG)n Simple_repeat Simple_repeat 2 86 0 22 35 0 0 chr12 119094362 119094391 -24692064 + GC_rich Low_complexity Low_complexity 1 29 0 291 295 66 66 chr12 119094857 119095023 -24691432 - MIR SINE MIR -62 200 35 668 328 137 9 chr12 119095091 119095515 -24690940 - L2 LINE L2 -5 3308 2831 959 82 0 15 chr12 119095515 119095650 -24690805 + AluSq/x SINE Alu 1 133 -180 1262 289 96 26 chr12 119095665 119095943 -24690512 - L2 LINE L2 -471 2843 2586 1598 145 42 11 chr12 119095943 119096226 -24690229 - AluJb SINE Alu -20 292 1 1262 289 96 26 chr12 119096226 119096477 -24689978 - L2 LINE L2 -728 2586 2277 533 235 184 67 chr12 119096478 119096869 -24689586 + MLT1J2 LTR MaLR 8 444 -2 508 107 0 13 chr12 119096949 119097024 -24689431 - MADE1 DNA Mariner -5 75 2 256 214 89 0 chr12 119097125 119097181 -24689274 - L2 LINE L2 -62 3251 3191 2188 92 0 0 chr12 119097293 119097588 -24688867 - AluSx SINE Alu -17 295 1 255 297 133 31 chr12 119097656 119097784 -24688671 + L2 LINE L2 3173 3313 0 292 252 132 58 chr12 119097870 119098059 -24688396 + MLT1F1 LTR MaLR 24 226 -341 1486 186 125 47 chr12 119098066 119098174 -24688281 - MLT1C LTR MaLR -9 458 360 1892 117 0 27 chr12 119098174 119098474 -24687981 + AluSx SINE Alu 1 292 -20 2039 102 7 7 chr12 119098480 119098775 -24687680 + AluY SINE Alu 5 299 -12 1486 186 125 47 chr12 119098775 119099084 -24687371 - MLT1C LTR MaLR -111 356 1 664 271 110 4 chr12 119099085 119099321 -24687134 + MLT1F1 LTR MaLR 269 529 -38 2178 94 7 0 chr12 119099321 119099608 -24686847 + AluSx SINE Alu 1 289 -23 32 0 0 0 chr12 119099608 119099640 -24686815 + AT_rich Low_complexity Low_complexity 1 32 0 871 135 78 0 chr12 119099640 119099781 -24686674 + AluSg SINE Alu 1 152 -158 1621 73 0 9 chr12 119099781 119100000 -24686455 - pTR5 LTR ERV1 -2050 388 172 344 265 10 0 chr12 119100003 119100101 -24686354 - LTR30 LTR ERV1 -80 642 544 4854 144 87 36 chr12 119100101 119101117 -24685338 - pTR5 LTR ERV1 -413 2025 743 1132 101 0 0 chr12 119101117 119101266 -24685189 + AluSg SINE Alu 147 295 -17 45458 37 1 1 chr12 119101273 119107432 -24679023 + L1PA3 LINE L1 1 6159 0 1148 133 0 0 chr12 119107472 119107637 -24678818 + AluSx SINE Alu 1 165 -147 478 196 19 28 chr12 119107657 119107764 -24678691 - MER5A DNA MER1_type -77 112 7 319 173 40 13 chr12 119107850 119107925 -24678530 + MLT1K LTR MaLR 183 259 -329 2008 103 45 14 chr12 119108154 119108627 -24677828 - MER51B LTR ERV1 0 377 1 463 198 216 18 chr12 119108804 119108915 -24677540 + AluJo SINE Alu 3 135 -177 2120 117 0 0 chr12 119108915 119109223 -24677232 + AluSp SINE Alu 5 312 -1 23 54 0 0 chr12 119109227 119109264 -24677191 + AT_rich Low_complexity Low_complexity 1 37 0 226 240 67 27 chr12 119109515 119109590 -24676865 - L3 LINE CR1 -246 1331 1254 810 156 17 73 chr12 119109615 119109666 -24676789 - L1MB2 LINE L1 -1 6170 6118 2162 104 0 3 chr12 119109666 119109963 -24676492 - AluSx SINE Alu -16 296 1 810 156 17 73 chr12 119109963 119110090 -24676365 - L1MB2 LINE L1 -53 6118 6002 1158 149 70 66 chr12 119110190 119110240 -24676215 - MSTB LTR MaLR 0 426 378 2065 126 3 0 chr12 119110240 119110541 -24675914 - AluSx SINE Alu -10 302 1 1158 149 70 66 chr12 119110541 119110731 -24675724 - MSTB LTR MaLR -48 378 185 2857 123 9 12 chr12 119110736 119111158 -24675297 + LTR3 LTR ERVK 5 425 -7 62310 26 10 5 chr12 119111171 119111357 -24675098 + HERVK3 LTR ERVK 40 224 -7019 2273 47 0 4 chr12 119111357 119111635 -24674820 + AluY SINE Alu 29 305 -6 62310 26 10 5 chr12 119111635 119114785 -24671670 + HERVK3 LTR ERVK 224 3357 -3886 8859 60 3 2 chr12 119114785 119115855 -24670600 + MER11C LTR ERVK 1 1071 0 62310 26 10 5 chr12 119115855 119117391 -24669064 + HERVK3 LTR ERVK 3357 4884 -2359 2414 81 3 0 chr12 119117391 119117699 -24668756 + AluSc SINE Alu 1 309 0 62310 26 10 5 chr12 119117699 119119990 -24666465 + HERVK3 LTR ERVK 4884 7241 -2 2991 120 7 5 chr12 119119992 119120417 -24666038 + LTR3 LTR ERVK 1 426 -6 980 138 114 6 chr12 119120430 119120597 -24665858 - MSTB LTR MaLR -237 189 5 1145 185 116 62 chr12 119120663 119120939 -24665516 + AluJo SINE Alu 1 291 -11 1354 178 24 4 chr12 119121129 119121382 -24665073 + AluJb SINE Alu 46 303 -9 218 255 0 0 chr12 119121406 119121457 -24664998 + L2 LINE L2 3252 3302 -11 2697 159 22 42 chr12 119121695 119121736 -24664719 - L1MB5 LINE L1 0 6174 6134 1825 130 39 3 chr12 119121736 119122021 -24664434 - AluSx SINE Alu -12 300 6 2158 87 7 32 chr12 119122031 119122224 -24664231 - AluSx SINE Alu -10 302 118 2468 53 0 0 chr12 119122224 119122523 -24663932 - AluY SINE Alu -12 299 1 2158 87 7 32 chr12 119122523 119122639 -24663816 - AluSx SINE Alu -194 118 1 2697 159 22 42 chr12 119122639 119123128 -24663327 - L1MB5 LINE L1 -49 6125 5644 1799 161 23 3 chr12 119123689 119123994 -24662461 - AluJb SINE Alu -1 311 1 1144 62 0 0 chr12 119124179 119124323 -24662132 + LTR13 LTR ERVK 1 144 -863 * 4036 49 2 4 chr12 119124319 119124812 -24661643 + LTR13 LTR ERVK 516 1007 0 2240 106 0 0 chr12 119124815 119125127 -24661328 + AluSx SINE Alu 1 312 0 2150 105 0 37 chr12 119125209 119125534 -24660921 - AluSp SINE Alu 0 313 1 1681 126 133 0 chr12 119125720 119125983 -24660472 + AluJo SINE Alu 5 302 0 2028 115 0 3 chr12 119126269 119126564 -24659891 - AluSx SINE Alu -14 298 5 1560 154 4 4 chr12 119127157 119127417 -24659038 - AluJo SINE Alu -52 260 1 619 301 154 29 chr12 119127424 119127873 -24658582 + L2 LINE L2 2200 2704 -610 2312 99 0 0 chr12 119127873 119128166 -24658289 - AluSx SINE Alu -19 293 1 674 193 163 10 chr12 119128177 119128379 -24658076 - L1MB8 LINE L1 0 6178 5946 323 304 84 43 chr12 119128382 119128414 -24658041 + L2 LINE L2 2687 2716 -556 2158 117 10 3 chr12 119128414 119128713 -24657742 + AluSx SINE Alu 1 301 -11 323 304 84 43 chr12 119128713 119129038 -24657417 + L2 LINE L2 2716 3057 -215 2290 75 11 0 chr12 119129290 119129604 -24656851 - AluY SINE Alu 0 317 1 2207 116 10 0 chr12 119129606 119129899 -24656556 - AluSx SINE Alu -16 296 1 2435 95 0 13 chr12 119130242 119130557 -24655898 - AluY SINE Alu 0 311 1 2337 80 21 0 chr12 119130559 119130846 -24655609 - AluSc SINE Alu -16 293 1 1791 148 8 0 chr12 119130966 119131223 -24655232 + AluJb SINE Alu 1 259 -53 552 171 11 0 chr12 119131260 119131348 -24655107 - FLAM_A SINE Alu -50 92 4 431 313 117 17 chr12 119131383 119131741 -24654714 - L1ME4a LINE L1 -158 5963 5570 28 0 0 0 chr12 119131748 119131776 -24654679 + AT_rich Low_complexity Low_complexity 1 28 0 2548 71 3 7 chr12 119131814 119132123 -24654332 - AluSx SINE Alu -2 310 3 21 36 0 0 chr12 119132813 119132841 -24653614 + AT_rich Low_complexity Low_complexity 1 28 0 1464 203 21 10 chr12 119132841 119133131 -24653324 - AluSx SINE Alu -19 293 1 933 152 0 0 chr12 119133133 119133271 -24653184 - FLAM_C SINE Alu -3 140 3 183 129 0 0 chr12 119133276 119133307 -24653148 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 30 69 0 0 chr12 119133309 119133367 -24653088 + AT_rich Low_complexity Low_complexity 1 58 0 2177 116 19 22 chr12 119133367 119133678 -24652777 - AluSg SINE Alu 0 310 1 2590 68 0 0 chr12 119133680 119133990 -24652465 - AluY SINE Alu -1 310 1 1957 103 12 100 chr12 119133991 119134157 -24652298 - AluSq SINE Alu -12 301 177 2310 112 0 0 chr12 119134157 119134453 -24652002 - AluSg SINE Alu -10 300 5 1957 103 12 100 chr12 119134453 119134616 -24651839 - AluSq SINE Alu -136 177 1 3303 167 14 38 chr12 119134616 119134877 -24651578 - L1MB7 LINE L1 -42 6142 5876 2216 116 17 0 chr12 119134877 119135170 -24651285 - AluSx SINE Alu -12 300 3 3303 167 14 38 chr12 119135170 119135236 -24651219 - L1MB7 LINE L1 -308 5876 5810 2369 98 69 20 chr12 119135236 119135583 -24650872 + THE1B LTR MaLR 1 364 0 3303 167 14 38 chr12 119135583 119135919 -24650536 - L1MB7 LINE L1 -374 5810 5494 1189 151 25 63 chr12 119135937 119136176 -24650279 + AluJo SINE Alu 82 311 -1 1237 168 9 31 chr12 119136980 119137122 -24649333 + AluJo SINE Alu 1 138 -174 2244 105 3 7 chr12 119137122 119137427 -24649028 + AluSx SINE Alu 1 304 -8 1237 168 9 31 chr12 119137427 119137510 -24648945 + AluJo SINE Alu 138 221 -91 484 98 0 0 chr12 119137510 119137571 -24648884 + AluSq/x SINE Alu 87 147 -166 2147 102 0 7 chr12 119137580 119137864 -24648591 - AluSx SINE Alu -30 282 1 1078 172 0 0 chr12 119137883 119138046 -24648409 + FRAM SINE Alu 1 156 -20 538 274 75 47 chr12 119138793 119138961 -24647494 + L1MC2 LINE L1 5526 5705 -2103 1471 160 0 0 chr12 119138961 119139186 -24647269 - AluSg/x SINE Alu -3 309 85 538 274 75 47 chr12 119139186 119139272 -24647183 + L1MC2 LINE L1 5705 5787 -2021 1908 112 105 0 chr12 119139356 119139632 -24646823 + AluSg SINE Alu 1 305 -5 1586 191 7 14 chr12 119139686 119139968 -24646487 - AluJb SINE Alu -32 280 1 1477 174 38 56 chr12 119140075 119140225 -24646230 - AluJo SINE Alu -23 289 145 1640 99 0 50 chr12 119140225 119140467 -24645988 - AluSg/x SINE Alu 0 312 83 1477 174 38 56 chr12 119140467 119140604 -24645851 - AluJo SINE Alu -167 145 7 2339 102 3 3 chr12 119140698 119141001 -24645454 + AluSg SINE Alu 1 303 -7 2211 118 7 0 chr12 119141006 119141302 -24645153 + AluSx SINE Alu 1 298 -14 2173 169 62 11 chr12 119141314 119141765 -24644690 + L1MB7 LINE L1 5702 6175 -9 2097 144 0 0 chr12 119141782 119142073 -24644382 + AluJo SINE Alu 1 291 -21 1996 159 24 71 chr12 119142154 119142271 -24644184 + L1MC2 LINE L1 5850 5971 -373 2462 89 0 3 chr12 119142271 119142574 -24643881 + AluSc SINE Alu 1 302 -7 1996 159 24 71 chr12 119142574 119142758 -24643697 + L1MC2 LINE L1 5971 6120 -224 1613 127 45 4 chr12 119142758 119143003 -24643452 + AluSx SINE Alu 56 310 -2 1996 159 24 71 chr12 119143003 119143204 -24643251 + L1MC2 LINE L1 6120 6329 -15 879 212 0 0 chr12 119143205 119143386 -24643069 + FRAM SINE Alu 1 181 0 420 252 63 28 chr12 119143573 119143757 -24642698 - MIR SINE MIR -50 212 16 1104 150 6 0 chr12 119144674 119144841 -24641614 - AluJb SINE Alu -16 296 129 316 284 34 0 chr12 119145259 119145347 -24641108 + MIR SINE MIR 165 255 -7 663 284 27 24 chr12 119145935 119146179 -24640276 + MIR SINE MIR 16 261 -1 2378 94 13 0 chr12 119146512 119146819 -24639636 + AluSp SINE Alu 1 311 -2 2377 103 0 0 chr12 119146918 119147219 -24639236 + AluSg SINE Alu 1 301 -9 642 105 0 11 chr12 119147228 119147323 -24639132 - AluSg/x SINE Alu -10 300 207 720 164 62 23 chr12 119147378 119147506 -24638949 + FLAM_C SINE Alu 1 133 0 2505 78 0 7 chr12 119148135 119148441 -24638014 + AluY SINE Alu 1 304 -7 1953 68 8 0 chr12 119148558 119148794 -24637661 - AluSg SINE Alu -71 239 2 2061 134 26 10 chr12 119148957 119149263 -24637192 + AluSx SINE Alu 2 312 0 2325 93 3 3 chr12 119149629 119149930 -24636525 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr12 119150125 119150146 -24636309 + AT_rich Low_complexity Low_complexity 1 21 0 1950 108 87 14 chr12 119150781 119151069 -24635386 + AluSc SINE Alu 1 309 0 1977 146 17 0 chr12 119151171 119151459 -24634996 + AluSq SINE Alu 1 293 -20 2326 104 0 3 chr12 119152084 119152383 -24634072 - AluSx SINE Alu -14 298 1 517 232 0 18 chr12 119152693 119152805 -24633650 + L2 LINE L2 3161 3270 -2 314 285 97 81 chr12 119152928 119153205 -24633250 + L2 LINE L2 3008 3292 -21 2420 92 0 0 chr12 119153205 119153510 -24632945 - AluSq SINE Alu -8 305 1 314 285 97 81 chr12 119153510 119153530 -24632925 + L2 LINE L2 3292 3310 -3 632 272 63 29 chr12 119153603 119153842 -24632613 + MIR SINE MIR 12 258 -4 200 369 0 0 chr12 119153926 119153991 -24632464 - L2 LINE L2 -87 3185 3121 23 0 0 0 chr12 119154346 119154369 -24632086 + GC_rich Low_complexity Low_complexity 1 23 0 250 244 56 5 chr12 119154851 119154956 -24631499 - MIR SINE MIR -63 145 62 2206 94 14 3 chr12 119154978 119155275 -24631180 + AluSq SINE Alu 1 300 -13 289 267 139 12 chr12 119155339 119155425 -24631030 - L2 LINE L2 -6 3266 3170 998 148 18 70 chr12 119155846 119156075 -24630380 - MER20 DNA MER1_type 0 219 3 771 308 36 5 chr12 119156183 119156404 -24630051 - MIR SINE MIR -31 231 4 2176 108 14 3 chr12 119156409 119156706 -24629749 - AluSg SINE Alu -10 300 1 682 220 8 0 chr12 119156906 119157030 -24629425 + MER2 DNA MER2_type 13 137 -208 250 52 0 207 chr12 119157030 119157066 -24629389 - MER75 DNA T2_type 0 514 493 2282 91 10 10 chr12 119157066 119157373 -24629082 + AluSx SINE Alu 6 312 0 250 52 0 207 chr12 119157373 119157394 -24629061 - MER75 DNA T2_type -21 493 469 2187 112 0 0 chr12 119157452 119157737 -24628718 + AluSc SINE Alu 1 285 -24 210 158 13 26 chr12 119157737 119157813 -24628642 + (TA)n Simple_repeat Simple_repeat 2 76 0 226 143 0 71 chr12 119157815 119157871 -24628584 + MER2 DNA MER2_type 159 210 -135 1938 145 0 38 chr12 119157896 119158214 -24628241 - AluSx SINE Alu -2 310 5 2527 73 0 0 chr12 119158254 119158556 -24627899 - AluY SINE Alu -9 302 1 346 215 15 0 chr12 119158563 119158628 -24627827 + MER2 DNA MER2_type 279 344 -1 1832 105 102 24 chr12 119158693 119159026 -24627429 - MER46B DNA MER2_type -1 235 2 2209 121 14 0 chr12 119159044 119159341 -24627114 + AluSx SINE Alu 1 301 -11 339 127 0 0 chr12 119159342 119159397 -24627058 - MER46B DNA MER2_type -302 59 5 252 273 15 0 chr12 119159691 119159757 -24626698 + (TATG)n Simple_repeat Simple_repeat 2 68 0 183 301 66 44 chr12 119159778 119159914 -24626541 - L2 LINE L2 -665 2649 2511 281 309 225 32 chr12 119159949 119160136 -24626319 - L2 LINE L2 -226 3046 2896 2041 133 3 7 chr12 119160136 119160437 -24626018 - AluSx SINE Alu -11 301 2 281 309 225 32 chr12 119160437 119160510 -24625945 - L2 LINE L2 -376 2896 2838 2398 84 3 0 chr12 119160510 119160809 -24625646 - AluSp SINE Alu -13 300 1 281 309 225 32 chr12 119160809 119161153 -24625302 - L2 LINE L2 -434 2838 2301 397 273 77 46 chr12 119161566 119161760 -24624695 + MIR SINE MIR 54 253 -9 1847 177 3 0 chr12 119161798 119162098 -24624357 + AluJb SINE Alu 1 301 -11 714 287 26 22 chr12 119162313 119162585 -24623870 - MLT1J LTR MaLR -2 509 237 285 188 0 88 chr12 119162980 119163060 -24623395 + AluJ/FRAM SINE Alu 220 292 -10 276 305 164 39 chr12 119163094 119163299 -24623156 + L2 LINE L2 2508 2686 -586 1799 169 0 7 chr12 119163299 119163595 -24622860 + AluJb SINE Alu 15 308 -4 276 305 164 39 chr12 119163595 119163829 -24622626 + L2 LINE L2 2686 3008 -264 1955 159 0 0 chr12 119164273 119164568 -24621887 + AluSx SINE Alu 1 295 -17 1711 177 32 0 chr12 119164607 119164889 -24621566 - AluJo SINE Alu -16 296 6 1380 203 3 14 chr12 119164892 119165182 -24621273 + MER58B DNA MER1_type 39 325 -16 23 33 0 0 chr12 119165259 119165289 -24621166 + AT_rich Low_complexity Low_complexity 1 30 0 2407 88 0 0 chr12 119165341 119165637 -24620818 + AluY SINE Alu 1 296 -15 1095 146 0 0 chr12 119165639 119165797 -24620658 + AluSg/x SINE Alu 140 297 -15 1660 142 0 0 chr12 119165890 119166122 -24620333 - AluSg/x SINE Alu 0 312 81 2281 104 3 3 chr12 119166126 119166425 -24620030 - AluY SINE Alu -12 299 1 2053 144 0 10 chr12 119166541 119166839 -24619616 - AluSx SINE Alu -17 295 1 448 129 79 79 chr12 119166839 119166940 -24619515 - FLAM_A SINE Alu -8 134 34 24 0 0 0 chr12 119166946 119166970 -24619485 + AT_rich Low_complexity Low_complexity 1 24 0 2286 99 7 0 chr12 119167025 119167317 -24619138 - AluSp SINE Alu -19 294 1 264 212 13 0 chr12 119167322 119167415 -24619040 - L1 LINE L1 -890 5256 5163 1699 193 3 19 chr12 119167415 119167726 -24618729 - AluJb SINE Alu -6 306 1 351 320 32 19 chr12 119167728 119167884 -24618571 - L1 LINE L1 -1093 5053 4896 857 187 58 71 chr12 119168144 119168183 -24618272 - MER58A DNA MER1_type -2198 222 184 1818 176 10 3 chr12 119168183 119168478 -24617977 + AluJo SINE Alu 5 301 -11 857 187 58 71 chr12 119168478 119168615 -24617840 - MER58A DNA MER1_type -2236 184 47 808 163 8 0 chr12 119168615 119168738 -24617717 + FLAM_A SINE Alu 1 124 -9 857 187 58 71 chr12 119168738 119168785 -24617670 - MER58A DNA MER1_type -2373 47 1 828 310 35 0 chr12 119168799 119169112 -24617343 - L1ME LINE L1 -303 5818 5495 370 217 53 112 chr12 119169197 119169265 -24617190 + L1ME4a LINE L1 5978 6048 -73 189 0 0 0 chr12 119169265 119169286 -24617169 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1942 166 3 13 chr12 119169287 119169600 -24616855 - AluJo SINE Alu -2 310 1 370 217 53 112 chr12 119169600 119169681 -24616774 + L1ME4a LINE L1 6047 6120 -1 1848 164 0 30 chr12 119169915 119170220 -24616235 + AluSx SINE Alu 1 296 -16 2224 110 10 3 chr12 119170990 119171289 -24615166 + AluSq SINE Alu 1 301 -12 1767 179 38 3 chr12 119171353 119171644 -24614811 + AluJo SINE Alu 1 301 -11 601 276 65 18 chr12 119171668 119171838 -24614617 - MER21B LTR ERV1 -360 503 326 250 227 182 11 chr12 119171902 119171990 -24614465 - MIR SINE MIR 0 262 160 313 134 146 37 chr12 119171997 119172009 -24614446 - L1MC4 LINE L1 -1337 6705 6696 761 106 8 53 chr12 119172009 119172097 -24614358 + L1MB3 LINE L1 6051 6133 -50 2287 108 0 19 chr12 119172097 119172404 -24614051 + AluSx SINE Alu 1 301 -11 761 106 8 53 chr12 119172404 119172447 -24614008 + L1MB3 LINE L1 6133 6176 -7 313 134 146 37 chr12 119172447 119172491 -24613964 - L1MC4 LINE L1 -1346 6696 6658 1859 153 3 21 chr12 119172491 119172671 -24613784 + L1MB8 LINE L1 5852 6025 -153 2518 74 0 3 chr12 119172671 119172981 -24613474 - AluSc SINE Alu 0 309 1 1859 153 3 21 chr12 119172981 119173133 -24613322 + L1MB8 LINE L1 6025 6178 0 313 134 146 37 chr12 119173133 119173157 -24613298 - L1MC4 LINE L1 -1384 6658 6615 2463 90 0 0 chr12 119173218 119173528 -24612927 - AluY SINE Alu -1 310 1 1515 177 26 15 chr12 119173799 119174064 -24612391 - AluJo SINE Alu -44 268 1 2360 117 0 3 chr12 119174983 119175292 -24611163 - AluSx SINE Alu -4 308 1 189 0 0 0 chr12 119175304 119175325 -24611130 + (TA)n Simple_repeat Simple_repeat 1 21 0 2040 138 7 13 chr12 119175325 119175619 -24610836 - AluSx SINE Alu -18 294 1 1902 149 3 23 chr12 119175636 119175937 -24610518 - AluSx SINE Alu -17 295 1 389 285 76 19 chr12 119176350 119176508 -24609947 - MER5B DNA MER1_type -4 174 8 270 236 0 110 chr12 119177705 119177832 -24608623 - MIR SINE MIR -66 196 84 2102 152 7 0 chr12 119178620 119178929 -24607526 - AluJo SINE Alu -1 311 1 1823 130 49 7 chr12 119179039 119179324 -24607131 - AluSx SINE Alu -15 297 1 535 248 25 8 chr12 119179329 119179450 -24607005 - FLAM_A SINE Alu -10 123 1 4061 90 3 39 chr12 119179630 119179739 -24606716 + LTR10C LTR ERV1 1 112 -479 2342 90 0 29 chr12 119179739 119180050 -24606405 - AluY SINE Alu -9 302 1 4061 90 3 39 chr12 119180050 119180064 -24606391 + LTR10C LTR ERV1 112 125 -466 2223 90 42 0 chr12 119180064 119180353 -24606102 - AluY SINE Alu -10 301 1 4061 90 3 39 chr12 119180353 119180841 -24605614 + LTR10C LTR ERV1 125 591 0 2313 111 0 0 chr12 119181575 119181872 -24604583 + AluSg SINE Alu 4 300 -10 2194 143 0 0 chr12 119181888 119182195 -24604260 + AluSx SINE Alu 5 311 -1 2134 122 13 20 chr12 119182196 119182500 -24603955 + AluSx SINE Alu 1 302 -10 2251 124 0 3 chr12 119182504 119182803 -24603652 + AluSx SINE Alu 2 299 -13 2219 125 10 0 chr12 119182924 119183228 -24603227 + AluSx SINE Alu 1 307 -5 198 0 0 0 chr12 119183243 119183265 -24603190 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2249 96 14 10 chr12 119183265 119183553 -24602902 - AluSq SINE Alu -24 289 1 1265 232 7 24 chr12 119184625 119184914 -24601541 + AluJo SINE Alu 1 284 -28 456 273 22 86 chr12 119184929 119185118 -24601337 + L1ME LINE L1 5543 5712 -409 1767 166 14 7 chr12 119185118 119185413 -24601042 + AluJb SINE Alu 1 297 -15 456 273 22 86 chr12 119185413 119185490 -24600965 + L1ME LINE L1 5712 5792 -329 566 304 40 24 chr12 119185508 119185656 -24600799 - MIR SINE MIR 0 262 107 1510 158 43 12 chr12 119185656 119185909 -24600546 + AluJb SINE Alu 43 303 -9 566 304 40 24 chr12 119185909 119186013 -24600442 - MIR SINE MIR -155 107 6 1573 169 75 11 chr12 119186112 119186391 -24600064 - AluJo SINE Alu -15 297 1 552 262 70 70 chr12 119186391 119186579 -24599876 - L1MEc LINE L1 -2642 3573 3386 2170 143 3 0 chr12 119186579 119186886 -24599569 - AluSx SINE Alu 0 312 5 552 262 70 70 chr12 119186886 119187013 -24599442 - L1MEc LINE L1 -2829 3386 3255 2280 114 3 3 chr12 119187013 119187320 -24599135 - AluSx SINE Alu -5 307 1 552 262 70 70 chr12 119187320 119187331 -24599124 - L1MEc LINE L1 -2959 3256 3246 2068 133 0 49 chr12 119187364 119187688 -24598767 + AluSx SINE Alu 1 308 -4 2024 238 32 49 chr12 119187688 119187797 -24598658 - L1MEc LINE L1 -3271 2944 2835 2091 135 0 3 chr12 119187797 119188093 -24598362 - AluSc SINE Alu -14 295 1 1948 154 0 16 chr12 119188093 119188261 -24598194 - AluSq SINE Alu -12 301 139 2484 88 0 0 chr12 119188261 119188568 -24597887 - AluY SINE Alu -4 307 1 1948 154 0 16 chr12 119188568 119188705 -24597750 - AluSq SINE Alu -174 139 1 2024 238 32 49 chr12 119188705 119189295 -24597160 - L1MEc LINE L1 -3379 2836 2286 1989 139 4 0 chr12 119189295 119189624 -24596831 - AluSx SINE Alu 0 330 1 2024 238 32 49 chr12 119189624 119189790 -24596665 - L1MEc LINE L1 -3929 2286 2119 2140 132 0 0 chr12 119189827 119190147 -24596308 + AluSx SINE Alu 1 320 0 249 119 0 0 chr12 119190579 119190621 -24595834 - AluSx SINE Alu -3 298 257 1920 141 0 11 chr12 119190621 119190905 -24595550 - AluSx SINE Alu -31 281 1 311 0 26 0 chr12 119190911 119190950 -24595505 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6622 60 17 47 chr12 119190950 119191910 -24594545 - SVA Other Other -23 1363 433 5477 87 61 41 chr12 119191923 119193394 -24593061 - SVA Other Other -518 868 2 259 125 16 16 chr12 119193403 119193467 -24592988 + GA-rich Low_complexity Low_complexity 3 66 0 300 227 72 120 chr12 119193523 119193767 -24592688 - L1MC4 LINE L1 0 8042 7788 1831 150 0 21 chr12 119193767 119194054 -24592401 + AluJb SINE Alu 1 281 -31 300 227 72 120 chr12 119194054 119194066 -24592389 - L1MC4 LINE L1 -254 7788 7777 2286 126 3 0 chr12 119194066 119194375 -24592080 - AluSx SINE Alu -2 310 1 300 227 72 120 chr12 119194375 119194491 -24591964 - L1MC4 LINE L1 -265 7777 7687 1778 144 0 0 chr12 119194554 119194818 -24591637 + AluSx SINE Alu 42 305 0 342 290 101 36 chr12 119195054 119195121 -24591334 - MIR SINE MIR -68 194 133 2189 114 0 7 chr12 119195121 119195411 -24591044 + AluSc SINE Alu 1 288 -21 342 290 101 36 chr12 119195411 119195481 -24590974 - MIR SINE MIR -129 133 48 2260 119 0 0 chr12 119195487 119195782 -24590673 + AluSx SINE Alu 3 297 -15 2490 56 0 0 chr12 119195784 119196106 -24590349 + AluY SINE Alu 1 322 0 264 200 0 0 chr12 119196246 119196301 -24590154 + (TG)n Simple_repeat Simple_repeat 1 55 0 718 165 0 8 chr12 119197091 119197212 -24589243 - FLAM_A SINE Alu -12 121 2 1901 153 30 0 chr12 119197227 119197522 -24588933 - AluJb SINE Alu -8 304 1 815 203 135 19 chr12 119197529 119197736 -24588719 - MIR SINE MIR -21 241 11 326 256 25 91 chr12 119197738 119197787 -24588668 - LTR67 LTR ERVL -52 505 454 2132 105 25 3 chr12 119197787 119198073 -24588382 - AluSq SINE Alu -21 292 1 326 256 25 91 chr12 119198073 119198144 -24588311 - LTR67 LTR ERVL -103 454 393 284 257 27 0 chr12 119198156 119198230 -24588225 - LTR67 LTR ERVL -446 111 36 879 201 33 9 chr12 119198636 119198850 -24587605 - MER20 DNA MER1_type 0 219 1 320 143 107 0 chr12 119198867 119198923 -24587532 + 5S rRNA rRNA 1 62 -59 1824 135 0 115 chr12 119199292 119199632 -24586823 - AluSx SINE Alu -11 301 1 225 208 21 0 chr12 119200294 119200342 -24586113 + L1ME2 LINE L1 5539 5587 -575 2217 119 7 0 chr12 119200342 119200644 -24585811 + AluSx SINE Alu 1 304 -8 311 341 112 6 chr12 119200779 119200958 -24585497 + L1ME2 LINE L1 5766 5963 -201 276 307 58 22 chr12 119201197 119201334 -24585121 - LTR33 LTR ERVL -13 508 367 768 232 191 125 chr12 119201365 119201636 -24584819 - MLT1G LTR MaLR -13 582 330 1647 150 48 48 chr12 119201636 119201929 -24584526 - AluJo SINE Alu -19 293 1 768 232 191 125 chr12 119201929 119202165 -24584290 - MLT1G LTR MaLR -265 330 1 486 238 138 22 chr12 119202216 119202397 -24584058 - LTR33 LTR ERVL -305 216 15 2302 101 7 0 chr12 119202887 119203183 -24583272 + AluSg SINE Alu 1 298 -12 415 281 75 75 chr12 119203184 119203483 -24582972 - L1ME4a LINE L1 -26 6095 5794 2539 60 0 3 chr12 119203483 119203781 -24582674 + AluY SINE Alu 1 297 -14 415 281 75 75 chr12 119203781 119203948 -24582507 - L1ME4a LINE L1 -326 5795 5629 2526 68 0 0 chr12 119204001 119204296 -24582159 - AluY SINE Alu -16 295 1 315 85 0 0 chr12 119204350 119204397 -24582058 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2256 108 0 3 chr12 119204425 119204722 -24581733 - AluSx SINE Alu -16 296 1 2383 104 0 13 chr12 119204724 119205032 -24581423 - AluSx SINE Alu -8 304 1 2115 139 0 13 chr12 119205718 119206028 -24580427 - AluSx SINE Alu -6 306 1 252 0 0 0 chr12 119206383 119206411 -24580044 + (TG)n Simple_repeat Simple_repeat 2 29 0 1983 136 0 14 chr12 119206411 119206698 -24579757 - AluSx SINE Alu -29 283 1 363 218 11 23 chr12 119206702 119206789 -24579666 - L1MC5 LINE L1 -1095 6866 6781 1721 101 0 0 chr12 119206789 119207007 -24579448 + AluSq SINE Alu 85 302 -11 2164 233 58 104 chr12 119207007 119207126 -24579329 + L1MC5 LINE L1 6859 6982 -979 2031 135 0 22 chr12 119207126 119207438 -24579017 + AluSx SINE Alu 1 305 -7 2164 233 58 104 chr12 119207438 119208016 -24578439 + L1MC5 LINE L1 6982 7489 -472 2190 106 10 3 chr12 119208016 119208309 -24578146 + AluSq SINE Alu 1 295 -18 2164 233 58 104 chr12 119208309 119208719 -24577736 + L1MC5 LINE L1 7489 7916 -45 2217 112 10 0 chr12 119208723 119209019 -24577436 + AluSx SINE Alu 1 299 -13 2262 84 0 78 chr12 119209019 119209354 -24577101 + AluSc SINE Alu 1 309 0 256 179 60 60 chr12 119209549 119209633 -24576822 - L2 LINE L2 -2 3311 3228 183 343 133 0 chr12 119210895 119211000 -24575455 + L2 LINE L2 3144 3262 -10 742 178 0 22 chr12 119211120 119211255 -24575200 + AluJo/FLAM SINE Alu 2 133 -169 2118 127 10 0 chr12 119211257 119211548 -24574907 - AluSq SINE Alu -19 294 1 531 297 57 14 chr12 119211698 119211910 -24574545 + L1ME1 LINE L1 5831 6051 -115 291 68 0 0 chr12 119211911 119211955 -24574500 - AluSx SINE Alu -3 299 256 1737 99 9 0 chr12 119211955 119212176 -24574279 - AluSx SINE Alu -89 223 1 255 302 47 0 chr12 119212176 119212262 -24574193 + L1ME1 LINE L1 6042 6131 -35 2280 109 6 6 chr12 119212278 119212589 -24573866 - AluSx SINE Alu -1 311 1 380 306 143 5 chr12 119212881 119213090 -24573365 + MIR SINE MIR 13 250 -12 1804 87 0 0 chr12 119214150 119214368 -24572087 - AluSg SINE Alu -82 228 11 1205 129 6 0 chr12 119214377 119214547 -24571908 - FRAM SINE Alu -6 170 1 2279 116 0 0 chr12 119214933 119215225 -24571230 - AluSx SINE Alu -16 296 5 1656 164 14 14 chr12 119215259 119215540 -24570915 + AluJb SINE Alu 1 281 -31 272 304 59 37 chr12 119216401 119216536 -24569919 - MIR SINE MIR -115 147 10 1507 151 0 110 chr12 119218188 119218319 -24568136 + AluJo SINE Alu 3 147 -155 2502 75 0 0 chr12 119218319 119218613 -24567842 - AluSc SINE Alu -14 295 2 1507 151 0 110 chr12 119218613 119218628 -24567827 + AluJo SINE Alu 147 162 -140 2334 69 0 87 chr12 119218628 119218961 -24567494 - AluY SINE Alu -7 304 1 1507 151 0 110 chr12 119218961 119219150 -24567305 + AluJo SINE Alu 162 302 0 347 240 70 97 chr12 119219651 119219872 -24566583 + HAL1b LINE L1 1202 1428 80 1576 193 33 36 chr12 119219872 119219990 -24566465 + AluJb SINE Alu 1 118 -194 2287 124 0 6 chr12 119219990 119220304 -24566151 + AluSx SINE Alu 1 312 0 1576 193 33 36 chr12 119220304 119220318 -24566137 + AluJb SINE Alu 118 131 -181 2523 77 3 0 chr12 119220318 119220617 -24565838 + AluSp SINE Alu 1 300 -13 1576 193 33 36 chr12 119220617 119220789 -24565666 + AluJb SINE Alu 131 305 -7 347 240 70 97 chr12 119220789 119220820 -24565635 + HAL1b LINE L1 1428 1458 110 267 31 0 0 chr12 119220820 119220852 -24565603 + (TTG)n Simple_repeat Simple_repeat 2 33 0 347 240 70 97 chr12 119220852 119220863 -24565592 + HAL1b LINE L1 1458 1137 -211 2269 96 0 17 chr12 119220863 119221164 -24565291 + AluSq SINE Alu 1 296 -17 347 240 70 97 chr12 119221164 119221364 -24565091 + HAL1b LINE L1 1136 1340 -8 222 200 0 0 chr12 119221383 119221403 -24565052 + A-rich Low_complexity Low_complexity 1 20 -30 1962 186 0 0 chr12 119221403 119221715 -24564740 + AluJb SINE Alu 1 312 0 222 200 0 0 chr12 119221715 119221744 -24564711 + A-rich Low_complexity Low_complexity 19 50 0 427 143 26 0 chr12 119222860 119222937 -24563518 - AluJb SINE Alu -1 301 223 639 119 10 0 chr12 119222939 119223040 -24563415 - AluJb SINE Alu -124 188 87 2177 119 0 22 chr12 119223628 119223947 -24562508 - AluSx SINE Alu 0 312 1 1106 204 0 49 chr12 119223949 119224175 -24562280 - AluJb SINE Alu -18 294 80 483 267 21 63 chr12 119224406 119224597 -24561858 - MIR SINE MIR -60 202 20 183 326 31 39 chr12 119226677 119226806 -24559649 - L2 LINE L2 -2 3311 3184 349 266 18 131 chr12 119227488 119227508 -24558947 + MIR SINE MIR 6 27 -235 1219 163 117 123 chr12 119227508 119227548 -24558907 - MER67A LTR ERV1 0 543 504 2230 135 0 0 chr12 119227548 119227845 -24558610 - AluSx SINE Alu -14 298 2 1219 163 117 123 chr12 119227845 119228350 -24558105 - MER67A LTR ERV1 -39 504 1 349 266 18 131 chr12 119228350 119228470 -24557985 + MIR SINE MIR 27 159 -103 180 0 0 0 chr12 119228470 119228490 -24557965 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 808 142 0 8 chr12 119228492 119228619 -24557836 - FLAM_C SINE Alu -7 126 1 349 266 18 131 chr12 119228619 119228696 -24557759 + MIR SINE MIR 160 202 -60 180 228 123 0 chr12 119228922 119228979 -24557476 - MER5A DNA MER1_type -119 70 7 411 299 124 16 chr12 119229066 119229111 -24557344 - MIR SINE MIR -16 246 207 2085 128 20 0 chr12 119229111 119229408 -24557047 - AluSx SINE Alu -9 303 1 411 299 124 16 chr12 119229408 119229562 -24556893 - MIR SINE MIR -55 207 42 366 23 0 0 chr12 119229833 119229876 -24556579 + (TG)n Simple_repeat Simple_repeat 2 44 0 2221 101 17 0 chr12 119229961 119230259 -24556196 - AluSp SINE Alu -10 303 1 2254 133 0 3 chr12 119230857 119231165 -24555290 + AluSx SINE Alu 1 307 -5 932 147 0 0 chr12 119231807 119231943 -24554512 + FLAM_C SINE Alu 2 137 -6 2232 117 16 35 chr12 119231955 119232020 -24554435 - THE1B LTR MaLR -4 360 295 2314 102 7 3 chr12 119232020 119232324 -24554131 + AluSx SINE Alu 1 305 -7 2232 117 16 35 chr12 119232324 119232625 -24553830 - THE1B LTR MaLR -69 295 1 872 200 12 6 chr12 119232625 119232790 -24553665 + FRAM SINE Alu 1 166 0 282 257 40 30 chr12 119232792 119232893 -24553562 + L1MC4a LINE L1 4744 4845 -1301 936 283 71 54 chr12 119232909 119233341 -24553114 + L1MC4a LINE L1 5212 5635 -529 1883 125 36 36 chr12 119233341 119233524 -24552931 - AluSx SINE Alu -2 310 125 495 0 0 0 chr12 119233524 119233579 -24552876 + (TG)n Simple_repeat Simple_repeat 2 56 0 1883 125 36 36 chr12 119233579 119233700 -24552755 - AluSx SINE Alu -186 126 6 936 283 71 54 chr12 119233700 119233929 -24552526 + L1MC4a LINE L1 5635 5566 -598 2071 114 36 0 chr12 119233929 119234210 -24552245 + AluSq SINE Alu 3 293 -20 441 242 178 35 chr12 119234296 119234527 -24551928 + MLT1J1 LTR MaLR 18 281 -165 2618 56 0 0 chr12 119234530 119234836 -24551619 + AluY SINE Alu 2 307 -4 187 253 105 21 chr12 119234912 119235007 -24551448 + L2 LINE L2 2851 2953 -319 25 0 0 0 chr12 119235398 119235423 -24551032 + GC_rich Low_complexity Low_complexity 1 25 0 608 222 58 18 chr12 119236544 119236715 -24549740 - MIR SINE MIR -29 233 56 794 118 0 8 chr12 119237097 119237216 -24549239 + FLAM_C SINE Alu 1 118 -15 1755 143 18 31 chr12 119237243 119237529 -24548926 + AluJo SINE Alu 6 287 -25 737 233 13 0 chr12 119237822 119237981 -24548474 + FRAM SINE Alu 10 170 -6 286 210 0 140 chr12 119238364 119238405 -24548050 + MIR SINE MIR 111 132 -130 2423 98 0 0 chr12 119238405 119238700 -24547755 + AluSg SINE Alu 1 295 -15 286 210 0 140 chr12 119238700 119238758 -24547697 + MIR SINE MIR 132 196 -66 1605 144 32 87 chr12 119239003 119239174 -24547281 - AluJb SINE Alu -8 304 156 1997 121 3 20 chr12 119239174 119239471 -24546984 - AluSx SINE Alu 0 312 21 1605 144 32 87 chr12 119239471 119239611 -24546844 - AluJb SINE Alu -156 156 10 1807 150 0 4 chr12 119239655 119239921 -24546534 + AluJo SINE Alu 1 265 -47 236 307 48 48 chr12 119239943 119240132 -24546323 + L1ME LINE L1 5688 5876 -288 2233 113 0 19 chr12 119240358 119240669 -24545786 + AluSx SINE Alu 1 305 -7 2378 84 7 0 chr12 119240903 119241202 -24545253 - AluSg SINE Alu -9 301 1 1184 158 0 0 chr12 119241204 119241381 -24545074 - FRAM SINE Alu -1 175 1 303 104 0 0 chr12 119241456 119241504 -24544951 + AluSc SINE Alu 252 299 0 1608 106 41 0 chr12 119241518 119241736 -24544719 + AluSp SINE Alu 1 227 -86 418 69 0 0 chr12 119241749 119241807 -24544648 - Alu SINE Alu -250 59 2 436 282 32 19 chr12 119241979 119242135 -24544320 - MIR SINE MIR -3 259 102 335 320 50 0 chr12 119242305 119242405 -24544050 + L2 LINE L2 3168 3272 0 228 264 42 14 chr12 119244948 119245020 -24541435 - MIR SINE MIR -140 122 49 989 113 0 0 chr12 119245020 119245153 -24541302 + AluJb SINE Alu 1 133 -179 2170 112 35 0 chr12 119245240 119245526 -24540929 - AluSx SINE Alu -16 296 1 560 243 41 18 chr12 119245652 119245821 -24540634 + MIR SINE MIR 20 192 -70 256 341 40 16 chr12 119246678 119246804 -24539651 - MIR SINE MIR -78 184 56 2502 80 0 0 chr12 119246804 119247106 -24539349 + AluSq SINE Alu 1 302 -11 2248 78 7 7 chr12 119247108 119247389 -24539066 + AluY SINE Alu 16 296 -15 1916 161 24 0 chr12 119247406 119247697 -24538758 - AluJb SINE Alu -14 298 1 1872 164 7 16 chr12 119247727 119248031 -24538424 - AluJb SINE Alu -11 301 1 2338 97 3 3 chr12 119248434 119248733 -24537722 - AluSq SINE Alu -14 299 1 947 306 82 11 chr12 119248916 119249370 -24537085 + L2 LINE L2 2827 3312 -1 1874 158 47 0 chr12 119249382 119249680 -24536775 + AluJo SINE Alu 1 312 0 1175 215 172 45 chr12 119249720 119250208 -24536247 + MLT1H1 LTR MaLR 6 555 0 386 301 140 0 chr12 119250209 119250345 -24536110 - MIR SINE MIR -104 158 4 812 142 0 8 chr12 119250979 119251113 -24535342 + FLAM_C SINE Alu 1 133 0 2402 95 3 7 chr12 119251144 119251450 -24535005 + AluSg SINE Alu 1 305 -5 2252 105 0 0 chr12 119252035 119252351 -24534104 - AluSx SINE Alu 0 316 1 244 315 54 0 chr12 119252530 119252641 -24533814 + L2 LINE L2 2661 2777 -537 1376 163 10 0 chr12 119252656 119252865 -24533590 + AluJo SINE Alu 82 292 -20 1772 157 66 0 chr12 119253149 119253436 -24533019 - AluSg SINE Alu -4 306 1 2185 143 0 0 chr12 119253983 119254291 -24532164 + AluSx SINE Alu 1 308 -4 937 220 63 37 chr12 119254364 119254746 -24531709 - L1 LINE L1 -2660 3486 3095 198 0 0 0 chr12 119254758 119254780 -24531675 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 2450 78 0 0 chr12 119254781 119255076 -24531379 - AluY SINE Alu -15 296 2 2061 148 7 3 chr12 119255089 119255387 -24531068 - AluJo SINE Alu -12 300 2 2249 133 0 3 chr12 119255464 119255773 -24530682 + AluSx SINE Alu 1 308 -4 2153 84 36 36 chr12 119256155 119256291 -24530164 + AluSq SINE Alu 1 136 -177 2499 73 0 25 chr12 119256291 119256606 -24529849 + AluY SINE Alu 1 307 -4 2153 84 36 36 chr12 119256606 119256777 -24529678 + AluSq SINE Alu 135 308 -5 1090 186 10 5 chr12 119256812 119257011 -24529444 + MER20 DNA MER1_type 18 217 -2 1963 140 0 14 chr12 119257260 119257546 -24528909 + AluJo SINE Alu 1 282 -30 2468 87 0 3 chr12 119257547 119257857 -24528598 - AluSg SINE Alu 0 310 2 1266 148 10 0 chr12 119257860 119258063 -24528392 + AluSg/x SINE Alu 105 309 0 263 276 19 29 chr12 119258067 119258172 -24528283 - MER5B DNA MER1_type -48 130 27 529 273 58 19 chr12 119258578 119258732 -24527723 + MIR SINE MIR 12 171 -91 2100 130 20 0 chr12 119259314 119259606 -24526849 + AluJo SINE Alu 1 298 -14 21449 119 19 84 chr12 119312208 119312220 -24474235 - L1P LINE L1 -1885 4261 4250 2063 112 3 0 chr12 119312220 119312506 -24473949 - AluSg SINE Alu -23 287 1 21449 119 19 84 chr12 119312506 119312997 -24473458 - L1P LINE L1 -1896 4250 3728 2307 60 27 7 chr12 119312997 119313295 -24473160 - AluY SINE Alu -7 304 1 21449 119 19 84 chr12 119313295 119317350 -24469105 - L1P LINE L1 -2418 3728 2 22 0 0 0 chr12 119318126 119318148 -24468307 + AT_rich Low_complexity Low_complexity 1 22 0 418 269 72 114 chr12 119322088 119322320 -24464135 + MLT1K LTR MaLR 145 385 -203 2249 95 0 3 chr12 119322320 119322616 -24463839 - AluSq SINE Alu -16 297 3 2216 75 24 0 chr12 119322621 119322913 -24463542 - AluSg1 SINE Alu -10 299 1 418 269 72 114 chr12 119322913 119323046 -24463409 + MLT1K LTR MaLR 389 496 -92 2526 57 0 0 chr12 119323046 119323347 -24463108 - AluY SINE Alu -10 301 1 418 269 72 114 chr12 119323347 119323431 -24463024 + MLT1K LTR MaLR 496 582 -6 287 266 37 28 chr12 119324249 119324358 -24462097 + MIR SINE MIR 22 131 -77 286 302 45 48 chr12 119325730 119325914 -24460541 + MIR SINE MIR 9 192 -58 187 312 196 22 chr12 119325962 119326100 -24460355 + L2 LINE L2 3111 3272 0 242 333 108 18 chr12 119326371 119326482 -24459973 + MIR SINE MIR 33 153 -55 316 243 66 29 chr12 119327684 119327820 -24458635 + MLT1J LTR MaLR 1 141 -370 310 288 15 144 chr12 119328372 119328636 -24457819 + L1ME4a LINE L1 5889 6118 -3 307 202 269 0 chr12 119329244 119329363 -24457092 - L1MD2 LINE L1 -2 6357 6207 2343 75 3 0 chr12 119329606 119329898 -24456557 - AluSp SINE Alu -20 293 1 236 207 58 81 chr12 119330188 119330275 -24456180 + L2 LINE L2 3185 3269 -3 1560 136 3 92 chr12 119330891 119331075 -24455380 - AluJo SINE Alu -17 295 145 2473 76 0 16 chr12 119331075 119331389 -24455066 - AluY SINE Alu -2 309 1 1560 136 3 92 chr12 119331389 119331499 -24454956 - AluJo SINE Alu -167 145 27 2247 99 30 3 chr12 119331661 119331965 -24454490 - AluSp SINE Alu -1 312 1 2006 126 42 3 chr12 119331965 119332250 -24454205 - AluSq SINE Alu -17 296 1 2208 81 57 0 chr12 119332260 119332543 -24453912 - AluSg SINE Alu -11 299 1 1854 164 41 39 chr12 119332830 119333219 -24453236 + MLT1B LTR MaLR 1 390 0 795 217 28 42 chr12 119334659 119334871 -24451584 - MER3 DNA MER1_type 0 209 1 318 222 28 118 chr12 119335043 119335074 -24451381 + L1MC4a LINE L1 5779 5811 -1997 2554 60 0 3 chr12 119335074 119335376 -24451079 - AluY SINE Alu -10 301 1 318 222 28 118 chr12 119335376 119335488 -24450967 + L1MC4a LINE L1 5811 5909 -1899 1459 123 33 53 chr12 119335768 119336011 -24450444 - AluJb SINE Alu -11 301 64 1516 152 42 11 chr12 119336246 119336510 -24449945 + AluJb SINE Alu 3 274 -38 240 204 148 46 chr12 119337215 119337323 -24449132 + MLT1J2 LTR MaLR 18 136 -314 1898 141 50 0 chr12 119337961 119338258 -24448197 + AluSx SINE Alu 1 312 0 554 240 0 23 chr12 119338513 119338642 -24447813 - MER96B DNA MER1_type? 0 417 292 608 64 0 75 chr12 119338679 119338773 -24447682 + AluS SINE Alu 5 91 -221 867 51 0 0 chr12 119338778 119338876 -24447579 + AluSg/x SINE Alu 195 292 -17 1191 172 134 11 chr12 119338876 119339138 -24447317 - MER96B DNA MER1_type? -123 294 1 817 142 79 0 chr12 119339176 119339303 -24447152 - FRAM SINE Alu -20 156 20 1747 102 16 16 chr12 119339411 119339667 -24446788 - AluY SINE Alu -55 256 1 319 143 0 18 chr12 119340087 119340143 -24446312 - L1MB8 LINE L1 -5 6173 6119 1829 156 0 46 chr12 119340143 119340470 -24445985 + AluJo SINE Alu 1 312 0 849 158 0 0 chr12 119340649 119340782 -24445673 + AluJo SINE Alu 1 133 -179 2153 112 10 3 chr12 119340784 119341079 -24445376 + AluSx SINE Alu 1 297 -15 40 0 0 0 chr12 119341079 119341119 -24445336 + AT_rich Low_complexity Low_complexity 1 40 0 969 174 60 0 chr12 119341123 119341290 -24445165 + AluJo SINE Alu 118 294 -18 196 291 0 25 chr12 119341541 119341620 -24444835 + MIR SINE MIR 81 157 -105 2313 85 0 0 chr12 119341639 119341973 -24444482 + AluSg SINE Alu 1 334 0 2082 132 0 44 chr12 119342304 119342440 -24444015 + AluSx SINE Alu 1 141 -171 2230 79 32 4 chr12 119342440 119342719 -24443736 + AluSc SINE Alu 1 287 -22 2082 132 0 44 chr12 119342719 119342901 -24443554 + AluSx SINE Alu 141 305 -7 745 101 0 28 chr12 119343221 119343330 -24443125 - FRAM SINE Alu -9 167 62 2015 99 6 64 chr12 119343374 119343508 -24442947 + AluSq SINE Alu 1 141 -172 2342 75 0 60 chr12 119343508 119343839 -24442616 + AluY SINE Alu 1 311 0 2015 99 6 64 chr12 119343839 119344018 -24442437 + AluSq SINE Alu 141 296 -17 277 215 0 46 chr12 119344027 119344092 -24442363 + L2 LINE L2 3155 3216 -56 2222 121 0 3 chr12 119344543 119344841 -24441614 - AluSx SINE Alu -15 297 1 289 316 0 22 chr12 119346211 119346350 -24440105 + L1MC/D LINE L1 5406 5541 -701 22 0 0 0 chr12 119346495 119346517 -24439938 + AT_rich Low_complexity Low_complexity 1 22 0 442 158 188 10 chr12 119346596 119346697 -24439758 - L1MD2 LINE L1 0 6359 6241 2204 113 0 28 chr12 119346847 119347166 -24439289 + AluSx SINE Alu 1 310 -2 2332 91 0 3 chr12 119347181 119347478 -24438977 + AluSq SINE Alu 7 302 -11 1620 157 78 4 chr12 119347505 119347612 -24438843 + AluJo SINE Alu 1 99 -213 210 37 0 0 chr12 119347612 119347639 -24438816 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1620 157 78 4 chr12 119347639 119347812 -24438643 + AluJo SINE Alu 99 302 -10 266 336 90 40 chr12 119347855 119348078 -24438377 + HAL1 LINE L1 146 379 -2128 369 217 100 88 chr12 119348426 119348641 -24437814 + HAL1 LINE L1 2256 2476 -31 766 189 0 0 chr12 119348641 119348773 -24437682 - FLAM_A SINE Alu -1 132 1 369 217 100 88 chr12 119348773 119348806 -24437649 + HAL1 LINE L1 2476 2507 0 2000 134 13 19 chr12 119348953 119349260 -24437195 - AluSx SINE Alu -7 305 1 2155 99 7 0 chr12 119349485 119349795 -24436660 + AluSp SINE Alu 1 312 0 2177 110 0 35 chr12 119349804 119349947 -24436508 + AluSx SINE Alu 1 147 -165 2137 107 10 10 chr12 119349947 119350246 -24436209 + AluSq SINE Alu 1 299 -14 2177 110 0 35 chr12 119350246 119350421 -24436034 + AluSx SINE Alu 147 308 -4 256 288 213 31 chr12 119351083 119351402 -24435053 - L3 LINE CR1 -88 1489 1113 1409 108 14 27 chr12 119351736 119351958 -24434497 + AluSg/x SINE Alu 85 303 -9 519 206 9 0 chr12 119352018 119352135 -24434320 + L1M4 LINE L1 5184 5301 -850 1499 153 0 4 chr12 119352159 119352388 -24434067 + AluSx SINE Alu 1 228 -84 27 0 0 0 chr12 119352954 119352981 -24433474 + AT_rich Low_complexity Low_complexity 1 27 0 345 334 81 7 chr12 119354048 119354301 -24432154 - L2 LINE L2 -333 2980 2714 2068 77 11 0 chr12 119354480 119354740 -24431715 - AluSg SINE Alu -12 298 36 2439 66 13 0 chr12 119355030 119355334 -24431121 - AluSq SINE Alu -5 308 1 709 156 0 16 chr12 119355730 119355852 -24430603 + FLAM_A SINE Alu 5 124 -9 21 36 0 0 chr12 119356451 119356479 -24429976 + AT_rich Low_complexity Low_complexity 1 28 0 394 271 60 15 chr12 119358244 119358377 -24428078 + MIR SINE MIR 9 147 -115 992 282 102 12 chr12 119358384 119358464 -24427991 - L2 LINE L2 -16 3297 3226 2369 87 0 13 chr12 119358464 119358774 -24427681 + AluSg SINE Alu 1 306 -4 992 282 102 12 chr12 119358774 119359115 -24427340 - L2 LINE L2 -87 3226 2838 615 266 76 46 chr12 119359325 119359550 -24426905 + MIR SINE MIR 34 262 0 2683 170 58 18 chr12 119361119 119361690 -24424765 - L1MB5 LINE L1 -1 6173 5580 1014 186 62 24 chr12 119361852 119362062 -24424393 + AluJo SINE Alu 1 218 -94 474 278 0 0 chr12 119362088 119362268 -24424187 + C-rich Low_complexity Low_complexity 1 180 0 243 256 0 0 chr12 119362304 119362394 -24424061 + C-rich Low_complexity Low_complexity 1 90 0 260 228 0 13 chr12 119362424 119362503 -24423952 + C-rich Low_complexity Low_complexity 1 78 0 519 148 0 12 chr12 119362644 119362725 -24423730 - AluSg1 SINE Alu -228 81 2 1677 145 30 44 chr12 119362822 119363119 -24423336 + AluJb SINE Alu 1 293 -19 1759 181 3 7 chr12 119363137 119363430 -24423025 + AluJo SINE Alu 1 292 -20 854 73 0 0 chr12 119364216 119364326 -24422129 - HY1 scRNA scRNA -1 111 2 2470 103 0 0 chr12 119364439 119364751 -24421704 - AluSx SINE Alu 0 312 1 188 242 106 15 chr12 119364905 119364971 -24421484 - MIR3 SINE MIR -6 202 131 2471 71 0 0 chr12 119365718 119366014 -24420441 + AluSg1 SINE Alu 1 296 -13 2234 120 3 0 chr12 119366390 119366699 -24419756 + AluSg SINE Alu 1 310 0 845 149 0 0 chr12 119367313 119367434 -24419021 - FLAM_A SINE Alu -14 128 8 213 210 0 0 chr12 119367440 119367502 -24418953 + T-rich Low_complexity Low_complexity 1 62 0 2805 39 15 0 chr12 119367504 119367841 -24418614 - L1PA3 LINE L1 0 6155 5814 261 250 94 10 chr12 119368398 119368494 -24417961 - MIR SINE MIR -38 224 121 226 247 86 62 chr12 119368673 119368754 -24417701 + L1MEd LINE L1 425 507 -5612 1544 197 0 7 chr12 119368818 119369087 -24417368 - AluJb SINE Alu -45 267 1 2180 119 0 3 chr12 119369115 119369417 -24417038 + AluSx SINE Alu 1 301 -11 226 206 215 0 chr12 119369525 119369632 -24416823 + L1MEd LINE L1 711 840 -5279 1532 198 17 3 chr12 119369658 119369956 -24416499 + AluJb SINE Alu 2 303 -9 190 271 0 0 chr12 119370765 119370813 -24415642 - L3 LINE CR1 -22 1555 1508 261 83 0 0 chr12 119371219 119371255 -24415200 + (TA)n Simple_repeat Simple_repeat 2 37 0 2170 134 7 0 chr12 119372530 119372837 -24413618 + AluSx SINE Alu 1 309 -3 269 211 72 72 chr12 119373301 119373453 -24413002 + L1ME LINE L1 5610 5761 -360 779 156 7 30 chr12 119373544 119373679 -24412776 - FLAM_C SINE Alu -1 132 1 585 252 38 25 chr12 119374015 119374174 -24412281 - MIR SINE MIR -64 198 38 2352 79 0 10 chr12 119374562 119374865 -24411590 - AluY SINE Alu -11 300 1 330 286 97 62 chr12 119376160 119376530 -24409925 + L1ME4a LINE L1 4976 5358 -788 2211 100 16 13 chr12 119376815 119376943 -24409512 + AluSx SINE Alu 1 127 -185 2332 78 0 0 chr12 119376943 119377260 -24409195 + AluSx SINE Alu 1 317 0 2211 100 16 13 chr12 119377260 119377441 -24409014 + AluSx SINE Alu 127 312 0 288 229 156 67 chr12 119377484 119377663 -24408792 + L1ME4a LINE L1 5704 5898 -223 699 144 72 8 chr12 119377935 119378060 -24408395 - FLAM_C SINE Alu 0 133 1 374 323 132 47 chr12 119378407 119378871 -24407584 - L2 LINE L2 -1 3271 2764 2459 69 3 0 chr12 119378885 119379188 -24407267 + AluY SINE Alu 1 304 -7 2239 94 0 3 chr12 119379342 119379629 -24406826 + AluSc SINE Alu 1 286 -23 182 283 0 0 chr12 119379705 119379751 -24406704 + L2 LINE L2 3268 3313 0 833 236 127 32 chr12 119380233 119380515 -24405940 + MER113 DNA MER1_type? 1 323 -198 2317 101 0 10 chr12 119380515 119380811 -24405644 + AluSc SINE Alu 1 293 -16 833 236 127 32 chr12 119380811 119380875 -24405580 + MER113 DNA MER1_type? 323 380 -141 749 131 188 25 chr12 119380881 119381041 -24405414 + AluSg/x SINE Alu 115 300 -10 2274 99 3 10 chr12 119381661 119381964 -24404491 - AluSx SINE Alu -8 304 4 2566 57 0 0 chr12 119382177 119382477 -24403978 - AluY SINE Alu -11 300 1 2277 149 63 33 chr12 119383632 119384122 -24402333 - L1MC2 LINE L1 0 6344 5840 447 139 156 49 chr12 119384602 119384724 -24401731 + AluJb SINE Alu 162 296 -16 338 301 157 30 chr12 119384727 119384989 -24401466 - L2 LINE L2 -33 3280 2986 218 345 9 26 chr12 119385104 119385217 -24401238 - L2 LINE L2 -488 2826 2716 2121 122 3 0 chr12 119385234 119385528 -24400927 + AluSx SINE Alu 1 295 -17 1547 150 4 8 chr12 119387332 119387578 -24398877 + AluJb SINE Alu 42 286 -26 450 0 0 0 chr12 119387578 119387628 -24398827 + (TATAA)n Simple_repeat Simple_repeat 2 51 0 2331 84 0 0 chr12 119387674 119387960 -24398495 + AluSq SINE Alu 1 286 -27 483 271 70 25 chr12 119388010 119388254 -24398201 + L1ME3 LINE L1 5908 6162 0 1579 232 64 7 chr12 119388370 119388542 -24397913 - L1ME1 LINE L1 -253 5913 5752 1844 164 3 3 chr12 119388542 119388835 -24397620 + AluSx SINE Alu 1 293 -19 1579 232 64 7 chr12 119388835 119389067 -24397388 - L1ME1 LINE L1 -414 5752 5486 2147 108 0 3 chr12 119389481 119389798 -24396657 - AluSx SINE Alu 0 316 1 1862 155 3 10 chr12 119390417 119390714 -24395741 + AluJo SINE Alu 1 295 -17 2188 107 0 20 chr12 119390722 119391020 -24395435 + AluSx SINE Alu 1 292 -20 367 164 21 0 chr12 119391020 119391092 -24395363 + AluY SINE Alu 133 193 -108 1469 57 11 0 chr12 119391194 119391406 -24395049 + AluY SINE Alu 103 316 0 1724 136 31 41 chr12 119391461 119391755 -24394700 + AluJo SINE Alu 1 291 -21 2201 94 20 7 chr12 119391911 119392210 -24394245 + AluY SINE Alu 1 303 -8 2007 137 0 0 chr12 119392214 119392507 -24393948 + AluSx SINE Alu 1 293 -19 1850 214 98 43 chr12 119392684 119393217 -24393238 + MER68 LTR ERV1 1 562 0 303 275 33 45 chr12 119393251 119393428 -24393027 - L1ME LINE L1 -448 5673 5495 239 252 95 20 chr12 119393635 119393782 -24392673 - L1ME LINE L1 -1038 5108 4951 2383 102 0 0 chr12 119393929 119394234 -24392221 - AluSq SINE Alu -8 305 1 297 51 26 0 chr12 119394259 119394298 -24392157 + FRAM SINE Alu 62 101 -65 25 0 0 0 chr12 119396744 119396769 -24389686 + AT_rich Low_complexity Low_complexity 1 25 0 1224 133 0 41 chr12 119397203 119397398 -24389057 - AluSg/x SINE Alu -1 309 123 1984 150 3 0 chr12 119397931 119398231 -24388224 + AluSx SINE Alu 1 301 -11 907 224 82 74 chr12 119398231 119398584 -24387871 - L1ME3A LINE L1 -220 5950 5595 2439 79 0 0 chr12 119398666 119398958 -24387497 - AluSc SINE Alu -17 292 1 726 186 50 68 chr12 119398964 119399125 -24387330 - AluJb SINE Alu -8 304 147 180 0 0 0 chr12 119399453 119399473 -24386982 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1866 165 0 19 chr12 119400011 119400327 -24386128 + AluJo SINE Alu 1 310 -2 518 236 55 24 chr12 119400341 119400506 -24385949 - L1ME LINE L1 -1232 4914 4745 1363 151 39 17 chr12 119400528 119400760 -24385695 - AluJo SINE Alu -75 237 1 244 167 0 0 chr12 119400766 119400814 -24385641 - L1ME LINE L1 -1462 4684 4637 314 167 167 0 chr12 119401186 119401258 -24385197 + AluJ/FLAM SINE Alu 1 84 -218 211 71 48 0 chr12 119401279 119401321 -24385134 + (TA)n Simple_repeat Simple_repeat 2 45 0 1990 121 24 3 chr12 119401321 119401610 -24384845 - AluSx SINE Alu -17 295 1 216 0 0 0 chr12 119401631 119401655 -24384800 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 222 118 0 0 chr12 119401655 119401689 -24384766 + (TA)n Simple_repeat Simple_repeat 2 35 0 2164 117 0 3 chr12 119401785 119402083 -24384372 - AluSx SINE Alu -14 298 2 335 22 0 22 chr12 119402083 119402128 -24384327 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2034 129 11 0 chr12 119402128 119402408 -24384047 - AluSx SINE Alu -29 283 1 1642 106 94 8 chr12 119402484 119402739 -24383716 + AluY SINE Alu 1 277 -34 1036 181 8 79 chr12 119403324 119403589 -24382866 - AluJo SINE Alu -66 246 1 260 260 179 40 chr12 119403589 119403812 -24382643 - L1ME4a LINE L1 -123 5998 5745 218 233 26 86 chr12 119404053 119404169 -24382286 + L3 LINE CR1 1468 1576 -1 180 0 0 0 chr12 119405160 119405180 -24381275 + (T)n Simple_repeat Simple_repeat 1 20 0 1197 203 21 16 chr12 119406768 119407010 -24379445 - AluJb SINE Alu -69 243 1 2431 96 0 3 chr12 119407029 119407341 -24379114 - AluSx SINE Alu -1 311 1 1782 149 13 26 chr12 119408035 119408343 -24378112 + AluJb SINE Alu 1 304 -8 1334 173 114 7 chr12 119408346 119408617 -24377838 + AluSx SINE Alu 1 300 -12 2283 112 0 3 chr12 119408619 119408924 -24377531 + AluSx SINE Alu 1 304 -8 1012 136 11 43 chr12 119408924 119409108 -24377347 + AluSg/x SINE Alu 134 311 -1 2075 147 0 0 chr12 119409514 119409821 -24376634 - AluSx SINE Alu -5 307 1 1423 171 0 23 chr12 119409831 119410136 -24376319 - AluSx SINE Alu -14 298 1 2329 90 13 0 chr12 119411442 119411743 -24374712 - AluSp SINE Alu -8 305 1 2257 118 3 0 chr12 119411954 119412259 -24374196 - AluSx SINE Alu -6 306 1 270 0 0 0 chr12 119412369 119412399 -24374056 + (TG)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr12 119412398 119412422 -24374033 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 2218 101 10 3 chr12 119412439 119412736 -24373719 - AluSg SINE Alu -11 299 1 2236 114 0 16 chr12 119413051 119413231 -24373224 - AluSx SINE Alu -1 311 137 2251 109 0 0 chr12 119413231 119413524 -24372931 - AluSg SINE Alu -17 293 1 2236 114 0 16 chr12 119413524 119413659 -24372796 - AluSx SINE Alu -175 137 1 2261 116 0 0 chr12 119413660 119413962 -24372493 - AluSx SINE Alu -10 302 1 333 133 33 17 chr12 119414578 119414638 -24371817 + AluSg/x SINE Alu 108 168 -134 401 111 14 56 chr12 119414745 119414817 -24371638 - AluS SINE Alu -242 70 2 1356 165 4 9 chr12 119414818 119415048 -24371407 - L1MC4a LINE L1 -339 7469 7241 2056 107 55 0 chr12 119415267 119415557 -24370898 + AluSx SINE Alu 1 306 -6 1370 156 24 133 chr12 119415570 119415909 -24370546 + AluJb SINE Alu 1 302 0 334 183 0 61 chr12 119415942 119416024 -24370431 + L1ME3 LINE L1 6064 6140 -22 25 0 0 0 chr12 119416045 119416070 -24370385 + AT_rich Low_complexity Low_complexity 1 25 0 1676 185 10 7 chr12 119416090 119416393 -24370062 + AluJb SINE Alu 4 307 -5 2268 108 10 0 chr12 119416397 119416704 -24369751 + AluSx SINE Alu 1 310 -2 2291 107 3 0 chr12 119416705 119417005 -24369450 + AluSq SINE Alu 2 302 -11 1815 139 9 49 chr12 119417184 119417508 -24368947 + AluJo SINE Alu 1 311 -1 1695 139 43 27 chr12 119417549 119417850 -24368605 - AluSx SINE Alu -6 306 1 1856 119 43 50 chr12 119419174 119419477 -24366978 - AluSx SINE Alu -11 301 1 1059 116 0 19 chr12 119419503 119419658 -24366797 - FRAM SINE Alu -14 152 1 1409 211 51 97 chr12 119419666 119420101 -24366354 + L1MD2 LINE L1 5928 6342 -17 609 126 68 0 chr12 119420560 119420663 -24365792 + HY1 scRNA scRNA 3 112 0 1721 162 22 0 chr12 119420679 119420957 -24365498 + AluSx SINE Alu 1 284 -28 186 43 0 0 chr12 119420957 119420980 -24365475 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1938 138 3 25 chr12 119420992 119421311 -24365144 + AluSx SINE Alu 1 312 0 1178 170 42 21 chr12 119421311 119421543 -24364912 + L1MB8 LINE L1 5818 6057 -121 729 165 35 0 chr12 119421550 119421665 -24364790 + AluSq/x SINE Alu 3 121 -192 2206 128 0 3 chr12 119422364 119422661 -24363794 + AluSx SINE Alu 1 296 -16 910 116 0 0 chr12 119423481 119423610 -24362845 - AluSp/q SINE Alu 0 313 185 288 206 0 44 chr12 119423727 119423795 -24362660 + AluS SINE Alu 1 65 -243 306 87 0 0 chr12 119423942 119423988 -24362467 + (TA)n Simple_repeat Simple_repeat 2 47 0 1309 223 123 67 chr12 119424021 119424407 -24362048 - L1MC4 LINE L1 -865 6943 6580 1997 134 28 0 chr12 119424407 119424697 -24361758 - AluSx SINE Alu -14 298 1 1309 223 123 67 chr12 119424697 119425131 -24361324 - L1MC4 LINE L1 -1228 6580 6140 1712 179 7 26 chr12 119425278 119425586 -24360869 + AluJo SINE Alu 1 302 -10 2304 104 0 0 chr12 119425848 119426145 -24360310 + AluSg SINE Alu 1 297 -13 2278 87 0 13 chr12 119426386 119426685 -24359770 + AluY SINE Alu 1 295 -16 649 188 0 53 chr12 119426709 119426842 -24359613 - FLAM_A SINE Alu -7 126 1 232 253 101 24 chr12 119427514 119427662 -24358793 + MIR SINE MIR 5 245 -17 1045 164 174 0 chr12 119427662 119427863 -24358592 + MER46A DNA MER2_type 1 236 0 232 253 101 24 chr12 119427863 119427880 -24358575 + MIR SINE MIR 245 259 -3 2343 93 0 3 chr12 119428877 119429177 -24357278 - AluSg SINE Alu -11 299 1 1952 58 0 0 chr12 119429432 119429655 -24356800 + AluSq SINE Alu 1 223 -90 21 0 0 0 chr12 119429655 119429676 -24356779 + AT_rich Low_complexity Low_complexity 1 21 0 2521 68 7 0 chr12 119429678 119429985 -24356470 + AluSq SINE Alu 1 309 -4 1877 137 7 4 chr12 119430005 119430282 -24356173 + AluSx SINE Alu 25 302 -10 262 230 119 40 chr12 119431516 119431642 -24354813 + L1P5 LINE L1 5507 5642 -509 28 29 0 0 chr12 119433608 119433643 -24352812 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr12 119433654 119433685 -24352770 + AT_rich Low_complexity Low_complexity 1 31 0 1796 133 0 71 chr12 119433694 119434003 -24352452 + AluJb SINE Alu 1 287 -25 2248 107 0 3 chr12 119434024 119434332 -24352123 + AluSc SINE Alu 1 307 -2 978 222 55 25 chr12 119434337 119434464 -24351991 - L1MC4a LINE L1 -71 7924 7802 1957 166 3 3 chr12 119434464 119434772 -24351683 + AluJb SINE Alu 1 308 -4 978 222 55 25 chr12 119434772 119434915 -24351540 - L1MC4a LINE L1 -193 7802 7467 667 176 80 0 chr12 119434915 119435040 -24351415 - AluSg/x SINE Alu -10 299 165 1653 143 4 8 chr12 119435145 119435404 -24351051 - AluSp SINE Alu -51 262 5 2243 110 10 0 chr12 119435481 119435789 -24350666 - AluSx SINE Alu -1 311 1 375 173 0 4 chr12 119436595 119436666 -24349789 - AluS SINE Alu -238 62 1 192 376 43 0 chr12 119438660 119438753 -24347702 - L3b LINE CR1 -137 1446 1350 244 341 126 6 chr12 119438793 119438960 -24347495 - L3b LINE CR1 -226 1357 1171 949 174 56 15 chr12 119440412 119440608 -24345847 - MER3 DNA MER1_type -5 204 1 392 181 32 21 chr12 119440630 119440724 -24345731 - L1MA10 LINE L1 -1 6333 6239 1738 221 100 27 chr12 119440727 119441140 -24345315 - L1ME1 LINE L1 -137 6029 5575 2319 106 0 3 chr12 119441140 119441441 -24345014 + AluSg SINE Alu 1 300 -10 1738 221 100 27 chr12 119441441 119441506 -24344949 - L1ME1 LINE L1 -591 5575 5516 916 144 14 7 chr12 119442750 119442896 -24343559 - FRAM SINE Alu -9 167 21 1433 134 37 8 chr12 119443180 119443426 -24343029 - L1MB3 LINE L1 0 6183 5931 1514 69 0 54 chr12 119443812 119444016 -24342439 - AluY SINE Alu -15 296 104 2330 101 0 16 chr12 119445461 119445778 -24340677 + AluSx SINE Alu 1 312 0 2044 125 0 3 chr12 119445860 119446149 -24340306 - AluSx SINE Alu -24 288 1 334 270 117 15 chr12 119446253 119446390 -24340065 - MIR SINE MIR -12 250 100 276 30 0 0 chr12 119446940 119446957 -24339498 + (CA)n Simple_repeat Simple_repeat 1 50 0 276 30 0 0 chr12 119446957 119446990 -24339465 + (CA)n Simple_repeat Simple_repeat 2 34 0 2294 91 0 0 chr12 119448012 119448297 -24338158 - AluSx SINE Alu -27 285 1 1868 147 3 7 chr12 119449714 119450014 -24336441 - AluJo SINE Alu -13 299 1 22 35 0 0 chr12 119450270 119450299 -24336156 + AT_rich Low_complexity Low_complexity 1 29 0 787 110 0 16 chr12 119450310 119450437 -24336018 + 7SK RNA RNA 1 125 -68 498 88 0 0 chr12 119450473 119450541 -24335914 + 7SK RNA RNA 121 188 -5 852 155 0 0 chr12 119450606 119450722 -24335733 - FLAM_C SINE Alu -17 116 1 1427 173 17 51 chr12 119451061 119451356 -24335099 - AluJb SINE Alu -27 285 1 717 173 38 0 chr12 119451370 119451503 -24334952 - L1MA10 LINE L1 -17 6317 6180 2337 105 0 0 chr12 119451706 119452010 -24334445 + AluSq SINE Alu 1 304 -9 2679 26 3 0 chr12 119452101 119452405 -24334050 - AluY SINE Alu -6 305 1 467 231 261 5 chr12 119452441 119452636 -24333819 - MIR SINE MIR -15 247 3 207 0 0 0 chr12 119452690 119452713 -24333742 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 631 291 136 5 chr12 119453892 119454112 -24332343 - MIR SINE MIR -1 261 13 344 200 170 20 chr12 119454180 119454280 -24332175 - L2 LINE L2 -961 2353 2239 361 245 0 0 chr12 119454306 119454400 -24332055 - L1MB7 LINE L1 0 6184 6091 401 189 14 0 chr12 119454515 119454589 -24331866 + MLT1F1 LTR MaLR 20 94 -473 1169 215 22 26 chr12 119454589 119454859 -24331596 + L1MD3 LINE L1 7392 7660 -335 745 217 65 102 chr12 119454863 119455186 -24331269 - L1M4 LINE L1 -5090 1765 1455 2029 102 3 34 chr12 119455254 119455582 -24330873 - AluSq SINE Alu 0 319 1 243 226 107 148 chr12 119455653 119455896 -24330559 - L1M4 LINE L1 -5670 1185 953 328 328 114 30 chr12 119455994 119456195 -24330260 - L1M4 LINE L1 -6012 847 630 436 272 76 37 chr12 119456207 119456421 -24330034 - L1M4 LINE L1 -6316 539 36 27 0 0 0 chr12 119457623 119457650 -24328805 + AT_rich Low_complexity Low_complexity 1 27 0 1884 149 3 3 chr12 119457656 119457966 -24328489 + AluJo SINE Alu 1 310 0 660 258 113 0 chr12 119458653 119458839 -24327616 + MIR SINE MIR 1 207 -55 3392 151 16 18 chr12 119459650 119459670 -24326785 + L1MB7 LINE L1 5288 5307 -877 2338 85 7 0 chr12 119459670 119459976 -24326479 - AluSc SINE Alu -1 308 1 3392 151 16 18 chr12 119459976 119460565 -24325890 + L1MB7 LINE L1 5307 5896 -288 430 204 0 0 chr12 119460569 119460662 -24325793 + THE1C LTR MaLR 201 293 -82 197 139 0 28 chr12 119460716 119460752 -24325703 + MIR SINE MIR 91 125 -83 232 302 103 9 chr12 119461054 119461170 -24325285 - MIR SINE MIR -79 183 57 1489 163 82 4 chr12 119461325 119461595 -24324860 + L1MB7 LINE L1 5880 6170 -14 2178 116 0 0 chr12 119461843 119462137 -24324318 + AluSx SINE Alu 1 294 -18 990 150 7 0 chr12 119462987 119463140 -24323315 - MER46A DNA MER2_type -1 235 82 517 169 84 6 chr12 119463136 119463266 -24323189 - MER46A DNA MER2_type -141 95 2 * 2145 121 0 10 chr12 119464017 119464323 -24322132 - AluSq SINE Alu -10 303 1 473 141 0 64 chr12 119464439 119464517 -24321938 + FLAM_A SINE Alu 55 127 -15 245 94 0 0 chr12 119464563 119464595 -24321860 - U6 snRNA snRNA -75 32 1 180 0 0 0 chr12 119464772 119464792 -24321663 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 2644 46 0 0 chr12 119465334 119465640 -24320815 + AluY SINE Alu 1 306 -5 631 251 82 8 chr12 119465650 119465893 -24320562 + L1MC4a LINE L1 5876 6136 -1672 237 132 0 0 chr12 119467173 119467211 -24319244 + (T)n Simple_repeat Simple_repeat 1 38 0 1979 156 0 22 chr12 119468055 119468370 -24318085 - AluJb SINE Alu -4 308 1 629 313 73 62 chr12 119468544 119468902 -24317553 + L2 LINE L2 2952 3313 0 786 269 55 72 chr12 119469480 119469624 -24316831 + L2 LINE L2 2563 2708 -606 1540 152 43 22 chr12 119469624 119469747 -24316708 + AluJb SINE Alu 1 120 -192 204 40 0 0 chr12 119469747 119469772 -24316683 + (CA)n Simple_repeat Simple_repeat 2 26 0 1540 152 43 22 chr12 119469772 119469925 -24316530 + AluJb SINE Alu 120 283 -29 786 269 55 72 chr12 119469925 119470182 -24316273 + L2 LINE L2 2708 2957 -357 497 213 19 37 chr12 119470188 119470296 -24316159 - MER81 DNA DNA -7 107 2 586 250 38 42 chr12 119470307 119470543 -24315912 + L2 LINE L2 2988 3222 -91 571 107 122 107 chr12 119470873 119471004 -24315451 + FLAM_C SINE Alu 1 133 0 303 207 0 0 chr12 119471163 119471221 -24315234 + MLT1F LTR MaLR 20 77 -465 2142 111 35 0 chr12 119471279 119471568 -24314887 + AluSx SINE Alu 1 299 -13 1610 160 10 31 chr12 119471578 119471872 -24314583 + AluJo SINE Alu 6 293 -19 252 182 34 80 chr12 119472028 119472116 -24314339 + MLT1H1 LTR MaLR 365 448 -107 1288 153 22 36 chr12 119472331 119472554 -24313901 - AluJb SINE Alu -11 301 82 183 42 0 0 chr12 119472906 119472930 -24313525 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2170 98 0 0 chr12 119472934 119473209 -24313246 - AluSx SINE Alu -37 275 1 1919 159 3 0 chr12 119473271 119473560 -24312895 + AluJb SINE Alu 1 290 -22 189 0 0 0 chr12 119473561 119473582 -24312873 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 916 192 0 6 chr12 119473605 119473782 -24312673 + AluJb SINE Alu 131 306 -6 2449 93 0 0 chr12 119473798 119474108 -24312347 + AluSp SINE Alu 1 310 -3 322 245 194 39 chr12 119474181 119474336 -24312119 + L2 LINE L2 2530 2708 -606 503 213 29 101 chr12 119474511 119474686 -24311769 - L1MC5 LINE L1 -198 7763 7577 966 132 0 22 chr12 119474686 119474822 -24311633 + AluJo/FLAM SINE Alu 1 133 -169 2440 74 0 0 chr12 119474823 119475120 -24311335 + AluY SINE Alu 1 297 -14 503 213 29 101 chr12 119475120 119475219 -24311236 - L1MC5 LINE L1 -383 7578 7507 1355 274 88 22 chr12 119475222 119475822 -24310633 + L2 LINE L2 2667 3313 0 2117 121 0 3 chr12 119475973 119476271 -24310184 + AluSg SINE Alu 1 297 -13 2505 76 3 0 chr12 119476316 119476619 -24309836 + AluSx SINE Alu 1 304 -8 1040 121 0 38 chr12 119476619 119476776 -24309679 + AluSg/x SINE Alu 134 284 -28 216 0 0 0 chr12 119476776 119476800 -24309655 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 299 270 10 40 chr12 119476828 119476928 -24309527 + L1MC4a LINE L1 5877 5973 -1835 22 0 0 0 chr12 119477057 119477079 -24309376 + AT_rich Low_complexity Low_complexity 1 22 0 1361 149 0 40 chr12 119477125 119477353 -24309102 - AluJo SINE Alu -12 300 82 419 148 0 0 chr12 119477372 119477433 -24309022 - U6 snRNA snRNA -46 61 1 408 311 58 36 chr12 119477733 119478042 -24308413 + L2 LINE L2 1695 2010 -1304 752 238 149 117 chr12 119478193 119478258 -24308197 - L2 LINE L2 0 3313 3252 700 202 0 8 chr12 119478258 119478382 -24308073 + FLAM_C SINE Alu 5 127 -6 752 238 149 117 chr12 119478382 119478600 -24307855 - L2 LINE L2 -61 3252 3043 1480 147 114 26 chr12 119478600 119478872 -24307583 - AluJo SINE Alu -16 296 1 1398 181 16 90 chr12 119478873 119479194 -24307261 - AluJo SINE Alu -15 297 1 752 238 149 117 chr12 119479194 119479370 -24307085 - L2 LINE L2 -269 3044 2836 1597 259 165 44 chr12 119480707 119481549 -24304906 - L2 LINE L2 -757 2557 1614 286 287 96 0 chr12 119481577 119481692 -24304763 - L1MC4a LINE L1 -1872 5936 5811 24 0 0 0 chr12 119481692 119481716 -24304739 + AT_rich Low_complexity Low_complexity 1 24 0 716 119 0 175 chr12 119481716 119481833 -24304622 - FLAM_C SINE Alu -169 133 50 2237 108 3 0 chr12 119481833 119482130 -24304325 + AluSx SINE Alu 1 298 -14 716 119 0 175 chr12 119482130 119482172 -24304283 - FLAM_C SINE Alu -252 50 2 561 215 116 62 chr12 119482315 119482557 -24303898 - L1MC5 LINE L1 -48 7913 7659 1738 124 11 29 chr12 119482581 119482891 -24303564 + AluJb SINE Alu 16 320 0 354 267 0 0 chr12 119483135 119483221 -24303234 - HAL1 LINE L1 -857 1650 1565 2081 122 26 0 chr12 119483266 119483570 -24302885 + AluSx SINE Alu 1 312 0 709 227 151 16 chr12 119483580 119483831 -24302624 - HAL1 LINE L1 -932 1575 1291 1313 190 0 9 chr12 119483832 119484064 -24302391 - AluJb SINE Alu -14 298 69 2390 84 0 10 chr12 119484110 119484418 -24302037 - AluSg SINE Alu -5 305 1 1934 114 28 31 chr12 119484422 119484712 -24301743 - AluSg SINE Alu -19 291 3 399 217 96 6 chr12 119484719 119484885 -24301570 - HAL1 LINE L1 -1209 1298 1118 350 201 214 45 chr12 119484889 119485043 -24301412 - HAL1 LINE L1 -1423 1084 905 248 181 108 48 chr12 119485924 119486007 -24300448 - HAL1 LINE L1 -1588 919 832 269 223 32 43 chr12 119486027 119486121 -24300334 - L1MC5 LINE L1 -36 7925 7833 189 0 0 0 chr12 119486211 119486232 -24300223 + (T)n Simple_repeat Simple_repeat 1 21 0 327 325 110 39 chr12 119486244 119486499 -24299956 - HAL1 LINE L1 -1702 805 533 1964 148 3 28 chr12 119486800 119487118 -24299337 + AluJb SINE Alu 1 310 -2 371 235 159 23 chr12 119487215 119487347 -24299108 + HAL1 LINE L1 2301 2450 -57 1331 128 4 70 chr12 119487471 119487713 -24298742 - AluJb SINE Alu -6 306 81 507 92 0 0 chr12 119487713 119487778 -24298677 + LTR19B LTR ERV1 1 65 -515 528 156 13 0 chr12 119487779 119487856 -24298599 - AluJb SINE Alu -233 79 2 908 202 37 0 chr12 119488303 119488491 -24297964 + MER3 DNA MER1_type 1 195 -14 232 292 106 68 chr12 119488353 119488514 -24297941 - MER3 DNA MER1_type -4 205 39 * 351 261 64 1 chr12 119488545 119488688 -24297767 + L2 LINE L2 2851 3005 -308 270 277 62 0 chr12 119489869 119489934 -24296521 + L2 LINE L2 3169 3237 -35 204 333 0 12 chr12 119489949 119490030 -24296425 + GA-rich Low_complexity Low_complexity 1 80 0 367 172 263 10 chr12 119490848 119490947 -24295508 - L2 LINE L2 -1 3271 3148 392 256 34 34 chr12 119491056 119491173 -24295282 + MIR3 SINE MIR 3 119 -89 188 235 0 59 chr12 119491176 119491227 -24295228 - L2 LINE L2 0 3272 3225 * 309 297 133 0 chr12 119491225 119491353 -24295102 + MIR SINE MIR 117 261 -1 186 331 53 38 chr12 119491376 119491509 -24294946 - L2 LINE L2 -40 3232 3098 243 114 0 0 chr12 119491659 119491703 -24294752 + (A)n Simple_repeat Simple_repeat 1 44 0 484 291 30 18 chr12 119493309 119493474 -24292981 + MIR SINE MIR 84 250 -12 370 293 122 0 chr12 119493506 119493653 -24292802 - L3 LINE CR1 -207 1370 1206 463 233 17 8 chr12 119494084 119494204 -24292251 + L1MC5 LINE L1 7806 7926 -35 2461 78 0 0 chr12 119494212 119494508 -24291947 + AluSq SINE Alu 1 296 -17 1642 172 43 13 chr12 119494547 119494670 -24291785 + AluJo SINE Alu 1 119 -193 297 0 0 0 chr12 119494670 119494703 -24291752 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1642 172 43 13 chr12 119494703 119494882 -24291573 + AluJo SINE Alu 119 312 0 1230 115 0 16 chr12 119496532 119496714 -24289741 - AluSg/x SINE Alu 0 312 134 2178 111 3 7 chr12 119496714 119497021 -24289434 - AluSx SINE Alu -6 306 1 23 0 0 0 chr12 119497023 119497046 -24289409 + AT_rich Low_complexity Low_complexity 1 23 0 401 226 2 2 chr12 119497142 119497234 -24289221 + L1ME4a LINE L1 1216 6048 -41 982 176 0 0 chr12 119497279 119497432 -24289023 - AluSg/x SINE Alu -20 292 140 392 316 13 40 chr12 119498691 119498842 -24287613 + MIR3 SINE MIR 3 148 -72 1145 154 0 0 chr12 119498982 119499151 -24287304 + FRAM SINE Alu 1 169 -7 810 188 0 0 chr12 119499152 119499269 -24287186 - AluJo/FLAM SINE Alu -185 117 1 701 292 91 25 chr12 119499284 119499794 -24286661 + L2 LINE L2 2766 3307 -6 317 325 105 0 chr12 119499806 119499920 -24286535 + L2 LINE L2 3147 3272 0 1713 146 84 3 chr12 119500929 119501216 -24285239 + AluSq SINE Alu 1 310 -3 2091 121 44 7 chr12 119501226 119501524 -24284931 + AluSx SINE Alu 1 309 -3 2059 138 3 0 chr12 119501610 119501906 -24284549 - AluSx SINE Alu -15 297 1 1980 140 3 13 chr12 119503285 119503599 -24282856 + AluJb SINE Alu 1 311 -1 2220 95 0 10 chr12 119503650 119503944 -24282511 + AluSg SINE Alu 1 291 -19 2202 100 14 0 chr12 119504086 119504375 -24282080 - AluSx SINE Alu -18 294 2 213 183 50 17 chr12 119505008 119505068 -24281387 + A-rich Low_complexity Low_complexity 2 63 0 200 213 25 38 chr12 119505136 119505186 -24281269 + GA-rich Low_complexity Low_complexity 2 52 -28 1155 148 30 0 chr12 119505186 119505355 -24281100 + FAM SINE Alu 1 174 -1 200 213 25 38 chr12 119505355 119505384 -24281071 + GA-rich Low_complexity Low_complexity 52 80 0 959 168 12 12 chr12 119505457 119505624 -24280831 + FRAM SINE Alu 1 167 -9 836 129 48 0 chr12 119506328 119506452 -24280003 + FLAM_C SINE Alu 1 130 -3 1013 239 52 50 chr12 119506702 119507045 -24279410 + L1ME1 LINE L1 5798 6141 -25 22 56 0 0 chr12 119507122 119507158 -24279297 + AT_rich Low_complexity Low_complexity 1 36 0 1079 128 0 6 chr12 119507180 119507359 -24279096 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1591 161 28 24 chr12 119507361 119507652 -24278803 - AluJo SINE Alu -20 292 1 1576 106 146 55 chr12 119509046 119509321 -24277134 - AluJo SINE Alu -12 300 1 1928 147 30 0 chr12 119509452 119509751 -24276704 + AluJo SINE Alu 1 308 -4 403 202 84 73 chr12 119510144 119510278 -24276177 + L1ME LINE L1 5625 5763 -358 2161 104 31 0 chr12 119510278 119510565 -24275890 + AluSg SINE Alu 1 296 -14 403 202 84 73 chr12 119510565 119510608 -24275847 + L1ME LINE L1 5763 5804 -317 206 89 44 44 chr12 119510620 119510665 -24275790 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 1819 160 7 3 chr12 119511343 119511670 -24274785 - AluJb SINE Alu 0 328 1 2101 141 7 0 chr12 119512596 119512900 -24273555 - AluSx SINE Alu -6 306 1 765 172 0 33 chr12 119513059 119513181 -24273274 + FLAM_C SINE Alu 2 119 -24 31 26 0 0 chr12 119513181 119513219 -24273236 + AT_rich Low_complexity Low_complexity 1 38 0 2359 84 3 0 chr12 119513227 119513524 -24272931 + AluSq SINE Alu 1 298 -15 438 247 153 27 chr12 119513800 119513950 -24272505 + L2 LINE L2 3104 3272 0 289 297 33 22 chr12 119514025 119514116 -24272339 - L3 LINE CR1 -237 1340 1249 372 282 28 22 chr12 119514146 119514162 -24272293 + MIR SINE MIR 23 37 -188 436 214 24 176 chr12 119514162 119514305 -24272150 + MER5B DNA MER1_type 1 104 -74 2165 113 3 0 chr12 119514305 119514598 -24271857 - AluSx SINE Alu -13 299 6 436 214 24 176 chr12 119514598 119514664 -24271791 + MER5B DNA MER1_type 104 178 0 372 282 28 22 chr12 119514664 119514784 -24271671 + MIR SINE MIR 37 164 -61 1531 226 118 7 chr12 119514990 119515414 -24271041 + L3 LINE CR1 912 1382 -195 342 210 56 91 chr12 119515426 119515483 -24270972 - MER5A DNA MER1_type -8 181 124 2219 103 0 26 chr12 119515483 119515794 -24270661 + AluSx SINE Alu 1 303 -9 342 210 56 91 chr12 119515794 119515879 -24270576 - MER5A DNA MER1_type -65 124 44 21 0 0 0 chr12 119515892 119515913 -24270542 + AT_rich Low_complexity Low_complexity 1 21 0 4098 167 41 39 chr12 119515914 119516745 -24269710 - L1MB8 LINE L1 0 6178 5346 757 156 30 22 chr12 119516799 119516934 -24269521 + FLAM_C SINE Alu 2 137 -6 1324 220 55 93 chr12 119516956 119517159 -24269296 + L1MC5 LINE L1 6923 7132 -829 2050 110 4 4 chr12 119517159 119517484 -24268971 + AluSx SINE Alu 1 325 0 6652 78 12 30 chr12 119517485 119517745 -24268710 + L1PB1 LINE L1 5215 5478 -673 1998 96 13 60 chr12 119517745 119518059 -24268396 + AluSq SINE Alu 1 299 -14 6652 78 12 30 chr12 119518059 119518376 -24268079 + L1PB1 LINE L1 5478 5799 -352 300 27 0 0 chr12 119518376 119518413 -24268042 + (CA)n Simple_repeat Simple_repeat 2 38 0 6652 78 12 30 chr12 119518413 119518656 -24267799 + L1PB1 LINE L1 5799 6020 -131 2190 88 11 0 chr12 119518656 119518930 -24267525 + AluSg SINE Alu 14 290 -20 6652 78 12 30 chr12 119518930 119519059 -24267396 + L1PB1 LINE L1 6020 6150 -1 1324 220 55 93 chr12 119519059 119519434 -24267021 + L1MC5 LINE L1 7131 7482 -479 2521 65 0 0 chr12 119519474 119519768 -24266687 + AluY SINE Alu 1 294 -17 978 196 44 62 chr12 119519784 119520105 -24266350 + L1MC5 LINE L1 7605 7919 -42 190 336 115 0 chr12 119520117 119520221 -24266234 + L3 LINE CR1 1380 1495 -82 300 284 64 0 chr12 119521081 119521190 -24265265 + L1ME3A LINE L1 5494 5609 -555 1301 189 4 0 chr12 119521191 119521419 -24265036 - MLT1D LTR MaLR 0 505 277 258 156 31 94 chr12 119521506 119521533 -24264922 - MLT1D LTR MaLR -404 101 74 2368 144 75 34 chr12 119521533 119521574 -24264881 - MSTA LTR MaLR 0 428 390 2096 140 13 0 chr12 119521574 119521882 -24264573 + AluSx SINE Alu 1 312 0 2368 144 75 34 chr12 119521882 119522251 -24264204 - MSTA LTR MaLR -38 390 1 258 156 31 94 chr12 119522251 119522287 -24264168 - MLT1D LTR MaLR -431 74 42 995 255 30 18 chr12 119522287 119522620 -24263835 + L1ME3A LINE L1 5615 5951 -219 216 67 0 0 chr12 119522816 119522846 -24263609 + (TG)n Simple_repeat Simple_repeat 2 31 0 339 253 38 0 chr12 119522918 119522997 -24263458 - Tigger5 DNA MER2_type 0 2323 2242 2224 110 20 0 chr12 119522999 119523298 -24263157 + AluSx SINE Alu 1 305 -7 442 197 13 0 chr12 119523300 119523376 -24263079 + Tigger5 DNA MER2_type 2247 2323 0 22 0 0 0 chr12 119523382 119523404 -24263051 + AT_rich Low_complexity Low_complexity 1 22 0 1114 151 43 0 chr12 119523704 119523889 -24262566 + MER20 DNA MER1_type 27 219 0 21 0 0 0 chr12 119524060 119524081 -24262374 + AT_rich Low_complexity Low_complexity 1 21 0 193 156 0 0 chr12 119524207 119524239 -24262216 + MIR SINE MIR 216 247 -15 401 214 48 0 chr12 119524308 119524392 -24262063 + L2 LINE L2 3220 3307 -6 1711 170 7 11 chr12 119525406 119525688 -24260767 + AluJo SINE Alu 1 281 -31 185 0 40 0 chr12 119525694 119525719 -24260736 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1596 187 0 27 chr12 119526720 119527020 -24259435 + AluJo SINE Alu 1 292 -20 2142 142 3 0 chr12 119527869 119528178 -24258277 + AluSq SINE Alu 1 310 -3 1629 188 13 23 chr12 119528207 119528511 -24257944 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr12 119528716 119528744 -24257711 + AT_rich Low_complexity Low_complexity 1 28 0 2115 68 4 0 chr12 119528891 119529157 -24257298 + AluY SINE Alu 45 311 0 350 299 87 52 chr12 119529231 119529462 -24256993 - MIR SINE MIR -10 252 14 196 226 235 17 chr12 119529469 119529584 -24256871 - MER5A DNA MER1_type -2 187 48 200 227 23 0 chr12 119529587 119529631 -24256824 + CT-rich Low_complexity Low_complexity 4 48 0 271 253 69 35 chr12 119530214 119530301 -24256154 - Charlie8 DNA MER1_type -2327 90 1 30 45 0 0 chr12 119530328 119530372 -24256083 + AT_rich Low_complexity Low_complexity 1 44 0 2059 136 3 3 chr12 119530460 119530770 -24255685 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 119531347 119531369 -24255086 + AT_rich Low_complexity Low_complexity 1 22 0 1288 184 71 57 chr12 119531714 119531996 -24254459 + AluJo SINE Alu 5 290 -12 23 0 0 0 chr12 119532016 119532039 -24254416 + AT_rich Low_complexity Low_complexity 1 23 0 329 226 149 54 chr12 119532053 119532221 -24254234 + L1ME4a LINE L1 5922 6105 -16 2290 92 13 3 chr12 119532343 119532648 -24253807 + AluSg SINE Alu 1 308 -2 1886 149 23 3 chr12 119533179 119533481 -24252974 - AluJo SINE Alu -4 308 1 191 250 15 44 chr12 119535107 119535175 -24251280 + MIR SINE MIR 98 163 -99 23 0 0 0 chr12 119535333 119535356 -24251099 + AT_rich Low_complexity Low_complexity 1 23 0 410 299 0 9 chr12 119535458 119535565 -24250890 + MER5B DNA MER1_type 6 111 -67 2068 83 0 0 chr12 119535568 119535832 -24250623 - AluSq SINE Alu -13 300 37 1739 183 0 0 chr12 119535838 119536139 -24250316 - AluJo SINE Alu -11 301 1 977 116 14 0 chr12 119536781 119536927 -24249528 + AluSg SINE Alu 1 148 -162 586 235 9 0 chr12 119537165 119537280 -24249175 + FLAM_A SINE Alu 6 121 -21 1558 168 46 0 chr12 119537296 119537576 -24248879 - AluJb SINE Alu -3 309 17 1170 174 18 5 chr12 119537706 119537930 -24248525 + AluJb SINE Alu 71 297 -15 273 98 0 0 chr12 119537932 119537973 -24248482 + (CA)n Simple_repeat Simple_repeat 2 42 0 1997 80 28 7 chr12 119538218 119538506 -24247949 - AluSx SINE Alu -17 295 2 1092 109 0 36 chr12 119538528 119538710 -24247745 + AluSg/x SINE Alu 119 295 -15 2159 93 6 13 chr12 119538710 119539022 -24247433 + AluSx SINE Alu 1 310 -2 205 51 51 0 chr12 119539647 119539686 -24246769 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 594 193 18 0 chr12 119539692 119539801 -24246654 - AluJb SINE Alu -31 281 171 258 204 148 46 chr12 119540131 119540239 -24246216 + MLT1J2 LTR MaLR 18 136 -314 1783 141 50 0 chr12 119540877 119541174 -24245281 + AluSx SINE Alu 1 312 0 558 240 0 23 chr12 119541429 119541558 -24244897 - MER96B DNA MER1_type? 0 417 292 619 64 0 75 chr12 119541595 119541689 -24244766 + AluS SINE Alu 5 91 -222 810 61 0 0 chr12 119541694 119541792 -24244663 + AluSg/x SINE Alu 198 295 -17 1178 172 134 11 chr12 119541792 119542054 -24244401 - MER96B DNA MER1_type? -123 294 1 1783 136 47 0 chr12 119542092 119542371 -24244084 - AluJo SINE Alu -20 292 1 2265 88 0 3 chr12 119542421 119542715 -24243740 + AluSx SINE Alu 1 293 -19 796 163 0 8 chr12 119542801 119542930 -24243525 + AluJo SINE Alu 7 134 -178 198 220 0 0 chr12 119542955 119543014 -24243441 + A-rich Low_complexity Low_complexity 1 59 0 350 341 111 4 chr12 119543036 119543262 -24243193 + L3b LINE CR1 1129 1378 -205 304 155 299 21 chr12 119543546 119543643 -24242812 + L1MC2 LINE L1 6206 6329 -15 24 53 0 0 chr12 119545843 119545881 -24240574 + GC_rich Low_complexity Low_complexity 1 38 0 414 304 104 46 chr12 119546119 119546359 -24240096 - MIR SINE MIR 0 262 9 1699 124 42 55 chr12 119546594 119546901 -24239554 - AluJo SINE Alu -9 303 1 2083 102 0 43 chr12 119546927 119547250 -24239205 - AluSg1 SINE Alu 0 309 1 1924 144 0 13 chr12 119547274 119547579 -24238876 - AluSx SINE Alu -11 301 1 2252 78 14 0 chr12 119547591 119547887 -24238568 - AluSp SINE Alu -13 300 1 313 245 11 43 chr12 119547902 119547996 -24238459 - MER113 DNA MER1_type? -222 299 209 803 130 0 0 chr12 119548033 119548148 -24238307 - FLAM_C SINE Alu -27 116 2 510 141 12 164 chr12 119548149 119548229 -24238226 - MER113 DNA MER1_type? -304 217 126 2380 81 0 0 chr12 119548229 119548537 -24237918 - AluY SINE Alu -3 308 1 510 141 12 164 chr12 119548537 119548616 -24237839 - MER113 DNA MER1_type? -395 126 109 1986 132 0 7 chr12 119548616 119548912 -24237543 + AluSx SINE Alu 1 294 -18 510 141 12 164 chr12 119548912 119549007 -24237448 - MER113 DNA MER1_type? -412 109 1 578 182 99 16 chr12 119549649 119549770 -24236685 - FLAM_C SINE Alu -11 132 2 426 236 104 124 chr12 119549792 119549882 -24236573 + MER102a DNA MER1_type 73 163 -1254 2425 68 3 0 chr12 119549882 119550191 -24236264 + AluY SINE Alu 1 310 -1 426 236 104 124 chr12 119550191 119550350 -24236105 + MER102a DNA MER1_type 163 317 -13 2155 88 7 7 chr12 119550368 119550665 -24235790 - AluSq SINE Alu -16 297 1 227 278 43 89 chr12 119550693 119550906 -24235549 - L1ME4a LINE L1 -5 8037 5979 236 242 16 0 chr12 119550945 119551007 -24235448 - L1ME2 LINE L1 -10 6154 6092 2545 166 56 6 chr12 119555896 119556397 -24230058 + L1MB8 LINE L1 5653 6178 0 1532 154 81 0 chr12 119556491 119556764 -24229691 + AluJo SINE Alu 1 295 -17 1606 138 18 89 chr12 119557200 119557410 -24229045 - AluJo SINE Alu -8 304 124 2150 111 0 0 chr12 119557410 119557707 -24228748 - AluSx SINE Alu -15 297 1 1606 138 18 89 chr12 119557707 119557823 -24228632 - AluJo SINE Alu -188 124 1 824 175 13 26 chr12 119557946 119558100 -24228355 - FRAM SINE Alu -27 149 1 186 171 68 125 chr12 119558462 119558524 -24227931 - L2 LINE L2 -9 3304 3247 1549 117 5 0 chr12 119558524 119558746 -24227709 - AluSx SINE Alu -89 223 1 186 171 68 125 chr12 119558746 119558771 -24227684 - L2 LINE L2 -66 3247 3222 229 286 36 12 chr12 119558860 119558944 -24227511 - L2 LINE L2 -254 3059 2974 213 283 44 44 chr12 119559053 119559166 -24227289 - L2 LINE L2 -564 2750 2638 196 197 0 197 chr12 119559984 119560101 -24226354 - L2 LINE L2 -1000 2314 2221 209 315 76 0 chr12 119560291 119560383 -24226072 + L2 LINE L2 3160 3258 -14 203 272 48 68 chr12 119560532 119560635 -24225820 + L2 LINE L2 2221 2321 -993 2010 131 0 0 chr12 119560767 119561065 -24225390 - AluSx SINE Alu -14 298 1 441 95 0 0 chr12 119561461 119561524 -24224931 + (TG)n Simple_repeat Simple_repeat 2 64 0 1925 140 7 0 chr12 119561710 119562003 -24224452 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 119562156 119562184 -24224271 + AT_rich Low_complexity Low_complexity 1 28 0 2053 135 0 0 chr12 119562821 119563117 -24223338 - AluSx SINE Alu -16 296 1 305 277 0 36 chr12 119563474 119563557 -24222898 - MIR3 SINE MIR -48 160 81 1815 139 34 0 chr12 119563557 119563852 -24222603 - AluJb SINE Alu -7 305 1 229 0 54 27 chr12 119564470 119564507 -24221948 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 278 150 17 0 chr12 119564595 119564655 -24221800 + L1MC/D LINE L1 5273 5333 -813 1362 109 0 0 chr12 119564655 119564847 -24221608 - AluSg/x SINE Alu -13 297 106 2136 116 0 0 chr12 119565462 119565764 -24220691 + AluSx SINE Alu 1 302 -10 1975 107 7 0 chr12 119565765 119566035 -24220420 + AluSx SINE Alu 1 272 -40 232 211 79 13 chr12 119566036 119566112 -24220343 + L1MC/D LINE L1 5704 5784 -2024 2114 116 3 10 chr12 119566195 119566505 -24219950 - AluSx SINE Alu -4 308 1 1672 167 10 7 chr12 119566825 119567124 -24219331 + AluJo SINE Alu 1 300 -12 2336 80 0 0 chr12 119567145 119567447 -24219008 - AluY SINE Alu -9 302 1 447 68 0 0 chr12 119567710 119567769 -24218686 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1902 113 7 7 chr12 119567769 119568053 -24218402 - AluSx SINE Alu -28 284 1 367 230 111 31 chr12 119568075 119568214 -24218241 - MIR SINE MIR -8 200 52 201 156 0 0 chr12 119569115 119569147 -24217308 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1736 167 10 3 chr12 119569505 119569811 -24216644 - AluJo SINE Alu -4 308 1 2208 87 7 3 chr12 119569939 119570237 -24216218 - AluSp SINE Alu -14 299 1 697 301 89 80 chr12 119571051 119571536 -24214919 + L2 LINE L2 2825 3313 0 225 369 0 0 chr12 119571596 119571661 -24214794 - L2 LINE L2 -461 2853 2789 1142 145 0 0 chr12 119571681 119571847 -24214608 + AluSg SINE Alu 1 166 -144 790 183 14 7 chr12 119571847 119571989 -24214466 - FAM SINE Alu -42 143 1 1763 229 45 92 chr12 119571991 119572633 -24213822 - L2 LINE L2 -513 2801 2190 2041 113 0 0 chr12 119573400 119573707 -24212748 - AluSx SINE Alu 0 307 1 2228 77 0 0 chr12 119574016 119574303 -24212152 + AluY SINE Alu 1 287 -24 299 25 25 0 chr12 119574303 119574343 -24212112 + (TA)n Simple_repeat Simple_repeat 2 42 0 2013 157 0 0 chr12 119574351 119574657 -24211798 + AluJo SINE Alu 1 306 -6 389 248 50 16 chr12 119574990 119575111 -24211344 + L2 LINE L2 3147 3271 -1 1991 143 3 0 chr12 119575483 119575790 -24210665 + AluSx SINE Alu 1 308 -4 1925 145 24 0 chr12 119576247 119576544 -24209911 - AluJb SINE Alu -8 304 1 477 50 0 0 chr12 119577909 119577969 -24208486 + (CA)n Simple_repeat Simple_repeat 1 60 0 1905 156 0 3 chr12 119577970 119578265 -24208190 - AluJo SINE Alu -18 294 1 255 154 39 0 chr12 119578596 119578648 -24207807 - Alu SINE Alu 0 302 249 1027 95 0 0 chr12 119578648 119578785 -24207670 + AluSg/x SINE Alu 162 298 -14 294 143 0 0 chr12 119578785 119578834 -24207621 - L1MB8 LINE L1 -27 6151 6103 298 64 0 0 chr12 119578841 119578888 -24207567 - L1MA3 LINE L1 0 6305 6259 * 2217 157 22 53 chr12 119578887 119579340 -24207115 - L1MB7 LINE L1 -67 6117 5679 1953 131 7 0 chr12 119579355 119579645 -24206810 - AluSx SINE Alu -20 292 1 2343 81 0 0 chr12 119580214 119580511 -24205944 - AluSx SINE Alu -15 297 1 430 264 62 16 chr12 119580660 119580789 -24205666 + MIR SINE MIR 128 262 0 262 270 67 0 chr12 119580849 119580938 -24205517 - L2 LINE L2 -16 3297 3203 200 135 27 0 chr12 119580951 119580988 -24205467 + (CA)n Simple_repeat Simple_repeat 1 38 0 1931 153 0 0 chr12 119581126 119581433 -24205022 + AluSx SINE Alu 1 307 -5 822 138 0 0 chr12 119581450 119581566 -24204889 + AluJo/FLAM SINE Alu 7 122 -190 1318 134 0 14 chr12 119581566 119581775 -24204680 - AluJb SINE Alu -17 295 90 1629 170 38 3 chr12 119581861 119582150 -24204305 - AluJb SINE Alu -13 299 1 1584 137 57 63 chr12 119582253 119582354 -24204101 + AluJb SINE Alu 3 103 -199 2187 111 0 13 chr12 119582354 119582533 -24203922 - AluSx SINE Alu 0 312 137 2249 94 3 0 chr12 119582533 119582832 -24203623 - AluSg SINE Alu -10 300 1 2187 111 0 13 chr12 119582832 119582968 -24203487 - AluSx SINE Alu -175 137 1 1584 137 57 63 chr12 119582968 119582998 -24203457 + AluJb SINE Alu 103 132 -170 1963 148 0 0 chr12 119582998 119583296 -24203159 + AluSx SINE Alu 3 300 -12 1584 137 57 63 chr12 119583296 119583462 -24202993 + AluJb SINE Alu 132 299 -3 2051 139 0 0 chr12 119584022 119584331 -24202124 - AluSx SINE Alu -3 309 1 37 0 0 0 chr12 119584510 119584547 -24201908 + AT_rich Low_complexity Low_complexity 1 37 0 2590 50 0 3 chr12 119584877 119585177 -24201278 - AluY SINE Alu -12 299 1 1529 187 106 66 chr12 119586093 119586417 -24200038 + L1MC5 LINE L1 7302 7661 -300 815 157 0 0 chr12 119586417 119586538 -24199917 - FLAM_A SINE Alu -12 121 1 1529 187 106 66 chr12 119586538 119586800 -24199655 + L1MC5 LINE L1 7661 7911 -50 384 71 0 0 chr12 119586801 119586857 -24199598 + (CA)n Simple_repeat Simple_repeat 1 56 0 2213 115 0 0 chr12 119587789 119588084 -24198371 + AluSx SINE Alu 1 295 -17 908 80 0 16 chr12 119588243 119588368 -24198087 - AluSp/q SINE Alu -8 305 183 2101 134 0 0 chr12 119589656 119589975 -24196480 + AluSx SINE Alu 1 319 0 621 270 34 29 chr12 119592583 119592739 -24193716 - L1MC4a LINE L1 -1918 5890 5731 2194 116 7 3 chr12 119592739 119593041 -24193414 - AluSx SINE Alu -9 303 1 621 270 34 29 chr12 119593041 119593088 -24193367 - L1MC4a LINE L1 -2077 5731 5686 22 0 0 0 chr12 119593232 119593254 -24193201 + AT_rich Low_complexity Low_complexity 1 22 0 2134 137 0 3 chr12 119593826 119594132 -24192323 - AluJo SINE Alu -5 307 3 287 267 46 51 chr12 119594510 119594727 -24191728 - L1MC4a LINE L1 -2281 5527 5312 263 301 6 58 chr12 119595516 119595672 -24190783 + MIR SINE MIR 113 260 -2 1758 88 52 0 chr12 119596723 119596972 -24189483 - LTR29 LTR ERV1 -66 556 295 2408 81 3 0 chr12 119598369 119598665 -24187790 - AluSp SINE Alu -16 297 1 1072 144 20 0 chr12 119598835 119598988 -24187467 - AluJb SINE Alu -20 292 137 1115 165 21 74 chr12 119599086 119599329 -24187126 + AluJo SINE Alu 38 267 -45 33 0 0 0 chr12 119599338 119599371 -24187084 + AT_rich Low_complexity Low_complexity 1 33 0 438 222 97 28 chr12 119600846 119600990 -24185465 + MER103 DNA DNA 12 165 -1 2070 151 0 3 chr12 119601051 119601362 -24185093 - AluJo SINE Alu -2 310 1 316 211 11 21 chr12 119601549 119601644 -24184811 + L1ME4a LINE L1 5678 5771 -350 254 260 29 48 chr12 119601709 119601813 -24184642 + L1ME4a LINE L1 5986 6087 -34 1842 154 7 7 chr12 119602069 119602367 -24184088 - AluJo SINE Alu -10 302 5 315 98 0 0 chr12 119602432 119602473 -24183982 + FLAM_A SINE Alu 21 61 -71 1989 152 3 3 chr12 119602942 119603239 -24183216 + AluJb SINE Alu 1 297 -15 2203 123 0 3 chr12 119603239 119603540 -24182915 + AluSx SINE Alu 1 300 -12 33 43 0 0 chr12 119604799 119604846 -24181609 + AT_rich Low_complexity Low_complexity 1 47 0 2078 132 3 22 chr12 119604964 119605282 -24181173 - AluSx SINE Alu 0 312 1 1904 153 3 3 chr12 119605620 119605914 -24180541 - AluJo SINE Alu -18 294 1 26 0 0 0 chr12 119605956 119605982 -24180473 + AT_rich Low_complexity Low_complexity 1 26 0 2266 107 0 0 chr12 119606461 119606750 -24179705 + AluSx SINE Alu 1 289 -23 315 0 0 0 chr12 119606753 119606788 -24179667 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2175 125 0 3 chr12 119606966 119607271 -24179184 + AluSx SINE Alu 4 307 -5 261 0 0 0 chr12 119608589 119608618 -24177837 + (CA)n Simple_repeat Simple_repeat 2 30 0 1844 162 0 19 chr12 119609184 119609498 -24176957 - AluJo SINE Alu -4 308 1 2099 108 4 0 chr12 119609704 119609981 -24176474 + AluSx SINE Alu 21 298 -14 640 236 130 0 chr12 119610424 119610585 -24175870 - MER5A DNA MER1_type -6 183 2 575 227 25 0 chr12 119612138 119612257 -24174198 - L2 LINE L2 -4 3309 3188 2295 112 3 6 chr12 119612370 119612683 -24173772 - AluSx SINE Alu 0 312 1 2048 152 0 13 chr12 119613422 119613725 -24172730 - AluJb SINE Alu -13 299 1 2198 133 0 0 chr12 119613735 119614036 -24172419 - AluSx SINE Alu -11 301 1 2091 131 3 0 chr12 119614798 119615095 -24171360 - AluSx SINE Alu -14 298 1 423 98 0 0 chr12 119615491 119615552 -24170903 + (TG)n Simple_repeat Simple_repeat 2 62 0 2045 140 7 0 chr12 119615738 119616031 -24170424 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 119616184 119616212 -24170243 + AT_rich Low_complexity Low_complexity 1 28 0 2176 135 0 0 chr12 119616849 119617145 -24169310 - AluSx SINE Alu -16 296 1 277 277 0 36 chr12 119617502 119617585 -24168870 - MIR3 SINE MIR -48 160 81 1931 139 34 0 chr12 119617585 119617880 -24168575 - AluJb SINE Alu -7 305 1 229 0 54 27 chr12 119618498 119618535 -24167920 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 283 150 17 0 chr12 119618623 119618683 -24167772 + L1M4 LINE L1 5273 5333 -813 2196 120 0 3 chr12 119618683 119618983 -24167472 - AluSx SINE Alu -13 299 1 564 96 85 11 chr12 119619807 119619901 -24166554 + MER53 DNA DNA 1 101 -88 752 124 0 18 chr12 119619936 119620049 -24166406 - FRAM SINE Alu -10 166 56 1839 126 14 37 chr12 119620080 119620232 -24166223 - AluSx SINE Alu -25 287 144 2542 69 7 3 chr12 119620232 119620538 -24165917 - AluY SINE Alu -4 307 1 1839 126 14 37 chr12 119620538 119620679 -24165776 - AluSx SINE Alu -168 144 1 2135 107 38 3 chr12 119620702 119620992 -24165463 - AluSx SINE Alu -12 300 1 1940 133 0 0 chr12 119621011 119621282 -24165173 - AluSx SINE Alu -36 276 6 674 241 104 8 chr12 119621284 119621525 -24164930 + L2 LINE L2 3050 3313 0 217 180 0 135 chr12 119621527 119621616 -24164839 + MIR SINE MIR 131 207 -55 4493 68 68 49 chr12 119621702 119622116 -24164339 + PABL_A LTR ERV1 1 433 -227 2277 43 58 0 chr12 119622116 119622393 -24164062 - AluYa5 SINE Alu -17 294 2 4493 68 68 49 chr12 119622393 119622626 -24163829 + PABL_A LTR ERV1 433 660 0 2619 39 3 7 chr12 119622647 119622955 -24163500 - AluY SINE Alu -4 307 1 35 41 0 0 chr12 119623559 119623608 -24162847 + GC_rich Low_complexity Low_complexity 1 49 0 197 242 143 22 chr12 119623941 119624032 -24162423 - MIR SINE MIR -77 131 30 302 273 0 11 chr12 119624808 119624896 -24161559 - MIR SINE MIR -126 136 50 1838 147 50 0 chr12 119624919 119625198 -24161257 - AluSg SINE Alu -17 293 1 1914 143 19 13 chr12 119625209 119625516 -24160939 - AluJb SINE Alu -3 309 1 241 224 79 53 chr12 119625560 119625636 -24160819 - MIR SINE MIR -96 112 35 284 238 163 61 chr12 119626124 119626271 -24160184 + Tigger8 DNA MER2_type 14 175 -491 384 235 189 0 chr12 119626313 119626445 -24160010 - MIR SINE MIR -91 171 15 254 191 85 0 chr12 119626445 119626492 -24159963 + Tigger8 DNA MER2_type 170 220 -446 1872 139 42 0 chr12 119626865 119627153 -24159302 - AluJb SINE Alu -12 300 1 1248 100 6 0 chr12 119627167 119627327 -24159128 - AluSg/x SINE Alu -23 286 126 2203 126 0 0 chr12 119627327 119627636 -24158819 - AluY SINE Alu -2 309 1 201 159 0 0 chr12 119627752 119627796 -24158659 + T-rich Low_complexity Low_complexity 1 44 0 1779 143 51 48 chr12 119628147 119628482 -24157973 + MER1B DNA MER1_type 2 337 0 2256 115 0 0 chr12 119628904 119629200 -24157255 + AluSx SINE Alu 1 296 -16 2137 113 3 0 chr12 119629203 119629514 -24156941 + AluSx SINE Alu 1 312 0 572 128 256 0 chr12 119629514 119629631 -24156824 + MER30 DNA MER1_type 84 230 0 210 241 114 38 chr12 119629972 119630051 -24156404 + L2 LINE L2 2542 2626 -688 673 181 0 53 chr12 119631563 119631696 -24154759 + FLAM_A SINE Alu 1 126 -7 2488 61 0 7 chr12 119631720 119632017 -24154438 - AluY SINE Alu -16 295 1 23 0 0 0 chr12 119633105 119633128 -24153327 + AT_rich Low_complexity Low_complexity 1 23 0 2269 113 0 0 chr12 119633204 119633513 -24152942 - AluSx SINE Alu -3 309 1 1471 181 0 7 chr12 119634997 119635267 -24151188 - AluSx SINE Alu -44 268 1 2295 106 0 0 chr12 119635549 119635842 -24150613 + AluSg SINE Alu 1 293 -17 1598 184 0 11 chr12 119635992 119636259 -24150196 - AluJb SINE Alu -39 273 10 25 31 0 0 chr12 119636275 119636307 -24150148 + AT_rich Low_complexity Low_complexity 1 32 0 1862 129 3 3 chr12 119636317 119636604 -24149851 - AluSp SINE Alu -22 291 5 2216 97 0 3 chr12 119636681 119636992 -24149463 - AluY SINE Alu -1 310 1 1291 197 39 28 chr12 119637083 119637234 -24149221 - AluJb SINE Alu -20 292 135 1584 167 0 48 chr12 119637234 119637545 -24148910 - AluJb SINE Alu -16 296 1 1291 197 39 28 chr12 119637545 119637677 -24148778 - AluJb SINE Alu -177 135 6 1315 167 94 14 chr12 119637692 119637968 -24148487 - AluJb SINE Alu -14 298 1 1794 94 8 4 chr12 119638734 119638990 -24147465 + AluSq SINE Alu 54 310 -3 1078 310 82 5 chr12 119639178 119639594 -24146861 + L2 LINE L2 2864 3311 -2 1910 83 4 4 chr12 119639857 119640121 -24146334 - AluY SINE Alu -13 298 35 382 257 114 14 chr12 119640277 119640417 -24146038 - L2 LINE L2 0 3313 3160 648 295 134 34 chr12 119640541 119640982 -24145473 - L2 LINE L2 -1 3312 2828 320 200 347 0 chr12 119640983 119641078 -24145377 - L2 LINE L2 -622 2692 2565 2306 88 0 0 chr12 119641261 119641558 -24144897 - AluSq SINE Alu -16 297 1 2249 87 0 3 chr12 119641563 119641862 -24144593 - AluSx SINE Alu -14 298 1 2120 117 73 0 chr12 119642276 119642592 -24143863 - MER1B DNA MER1_type 0 339 1 1882 128 31 0 chr12 119644185 119644473 -24141982 + AluSx SINE Alu 1 297 -15 214 360 58 29 chr12 119644507 119644646 -24141809 - L2 LINE L2 -198 3074 2932 1195 160 14 5 chr12 119644846 119645058 -24141397 + AluJb SINE Alu 82 295 -17 234 105 0 0 chr12 119645399 119645437 -24141018 + (TG)n Simple_repeat Simple_repeat 2 39 0 5011 138 65 56 chr12 119645463 119646457 -24139998 + MER52C LTR ERV1 276 1278 0 1969 125 6 26 chr12 119646896 119647207 -24139248 - AluSx SINE Alu -6 306 2 339 244 67 79 chr12 119647220 119647384 -24139071 - L3 LINE CR1 -1228 349 188 2097 103 7 17 chr12 119647772 119648074 -24138381 - AluSq SINE Alu -14 299 1 2230 89 0 0 chr12 119648271 119648563 -24137892 - AluSg1 SINE Alu -17 292 1 809 141 13 40 chr12 119648563 119648712 -24137743 - AluJb SINE Alu -16 296 152 1888 127 0 16 chr12 119649320 119649634 -24136821 - AluSc SINE Alu 0 309 1 234 272 40 72 chr12 119649742 119649867 -24136588 + L2 LINE L2 3180 3300 -13 820 151 0 0 chr12 119650264 119650390 -24136065 - FLAM_C SINE Alu -17 126 1 1765 108 0 137 chr12 119650601 119650945 -24135510 - AluSq SINE Alu -16 297 1 1289 214 3 29 chr12 119651548 119651856 -24134599 - AluJb SINE Alu -12 300 1 2034 127 10 0 chr12 119651867 119652174 -24134281 - AluSx SINE Alu -2 310 1 1739 124 7 38 chr12 119653165 119653344 -24133111 - AluJo SINE Alu -18 294 126 2132 112 0 0 chr12 119653344 119653630 -24132825 + AluSc SINE Alu 1 286 -23 1739 124 7 38 chr12 119653630 119653740 -24132715 - AluJo SINE Alu -186 126 14 2365 68 6 13 chr12 119653833 119654144 -24132311 - AluY SINE Alu -2 309 1 222 225 5 18 chr12 119654316 119654392 -24132063 + MIR SINE MIR 73 145 -63 328 287 103 52 chr12 119654456 119654558 -24131897 + MIR SINE MIR 12 128 -134 1347 163 78 39 chr12 119654558 119654841 -24131614 - AluSx SINE Alu -18 294 1 328 287 103 52 chr12 119654841 119654912 -24131543 + MIR SINE MIR 128 194 -68 40 21 0 0 chr12 119656325 119656372 -24130083 + AT_rich Low_complexity Low_complexity 1 47 0 761 187 0 15 chr12 119656506 119656640 -24129815 - FLAM_A SINE Alu -1 132 1 2258 98 3 0 chr12 119656647 119656952 -24129503 - AluSx SINE Alu -6 306 1 194 0 39 0 chr12 119656955 119656981 -24129474 + (TTA)n Simple_repeat Simple_repeat 2 28 0 296 250 192 0 chr12 119656981 119657101 -24129354 - L1MC4a LINE L1 -1930 5878 5736 1689 187 0 9 chr12 119657117 119657432 -24129023 - AluJo SINE Alu 0 312 1 2204 108 0 0 chr12 119657960 119658256 -24128199 + AluSq SINE Alu 1 296 -17 2328 90 0 0 chr12 119658433 119658743 -24127712 - AluY SINE Alu -1 310 1 392 316 13 40 chr12 119709421 119709572 -24076883 + MIR3 SINE MIR 3 148 -72 1145 154 0 0 chr12 119709712 119709881 -24076574 + FRAM SINE Alu 1 169 -7 810 188 0 0 chr12 119709882 119709999 -24076456 - AluJo/FLAM SINE Alu -185 117 1 701 292 91 25 chr12 119710014 119710524 -24075931 + L2 LINE L2 2766 3307 -6 317 325 105 0 chr12 119710536 119710650 -24075805 + L2 LINE L2 3147 3272 0 1713 146 84 3 chr12 119711659 119711946 -24074509 + AluSq SINE Alu 1 310 -3 2127 124 24 0 chr12 119711956 119712254 -24074201 + AluSx SINE Alu 1 305 -7 442 197 13 0 chr12 119712256 119712332 -24074123 + Tigger5 DNA MER2_type 2247 2323 0 22 0 0 0 chr12 119712338 119712360 -24074095 + AT_rich Low_complexity Low_complexity 1 22 0 1114 151 43 0 chr12 119712660 119712845 -24073610 + MER20 DNA MER1_type 27 219 0 21 0 0 0 chr12 119713016 119713037 -24073418 + AT_rich Low_complexity Low_complexity 1 21 0 193 156 0 0 chr12 119713163 119713195 -24073260 + MIR SINE MIR 216 247 -15 401 214 48 0 chr12 119713264 119713348 -24073107 + L2 LINE L2 3220 3307 -6 1711 170 7 11 chr12 119714362 119714644 -24071811 + AluJo SINE Alu 1 281 -31 185 0 40 0 chr12 119714650 119714675 -24071780 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1596 187 0 27 chr12 119715676 119715976 -24070479 + AluJo SINE Alu 1 292 -20 2142 142 3 0 chr12 119716825 119717134 -24069321 + AluSq SINE Alu 1 310 -3 1629 188 13 23 chr12 119717163 119717467 -24068988 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr12 119717672 119717700 -24068755 + AT_rich Low_complexity Low_complexity 1 28 0 2115 68 4 0 chr12 119717847 119718113 -24068342 + AluY SINE Alu 45 311 0 350 299 87 52 chr12 119718187 119718418 -24068037 - MIR SINE MIR -10 252 14 196 226 235 17 chr12 119718425 119718540 -24067915 - MER5A DNA MER1_type -2 187 48 200 227 23 0 chr12 119718543 119718587 -24067868 + CT-rich Low_complexity Low_complexity 4 48 0 271 253 69 35 chr12 119719170 119719257 -24067198 - Charlie8 DNA MER1_type -2327 90 1 30 45 0 0 chr12 119719284 119719328 -24067127 + AT_rich Low_complexity Low_complexity 1 44 0 2059 136 3 3 chr12 119719416 119719726 -24066729 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 119720303 119720325 -24066130 + AT_rich Low_complexity Low_complexity 1 22 0 1288 184 71 57 chr12 119720670 119720952 -24065503 + AluJo SINE Alu 5 290 -12 23 0 0 0 chr12 119720972 119720995 -24065460 + AT_rich Low_complexity Low_complexity 1 23 0 329 226 149 54 chr12 119721009 119721177 -24065278 + L1ME4a LINE L1 5922 6105 -16 2290 92 13 3 chr12 119721299 119721604 -24064851 + AluSg SINE Alu 1 308 -2 1886 149 23 3 chr12 119722135 119722437 -24064018 - AluJo SINE Alu -4 308 1 183 250 15 44 chr12 119724063 119724131 -24062324 + MIR SINE MIR 98 163 -99 23 0 0 0 chr12 119724289 119724312 -24062143 + AT_rich Low_complexity Low_complexity 1 23 0 403 299 0 9 chr12 119724414 119724521 -24061934 + MER5B DNA MER1_type 6 111 -67 2162 83 0 0 chr12 119724524 119724788 -24061667 - AluSq SINE Alu -13 300 37 1830 183 0 0 chr12 119724794 119725095 -24061360 - AluJo SINE Alu -11 301 1 1036 116 14 0 chr12 119725737 119725883 -24060572 + AluSg SINE Alu 1 148 -162 2284 92 13 3 chr12 119726224 119726529 -24059926 - AluSg SINE Alu -2 308 1 2059 138 3 0 chr12 119727908 119728204 -24058251 + AluSx SINE Alu 1 297 -15 2091 121 44 7 chr12 119728290 119728588 -24057867 - AluSx SINE Alu -3 309 1 1437 153 109 14 chr12 119728605 119728880 -24057575 - AluJb SINE Alu 0 302 2 1425 140 0 9 chr12 119729358 119729580 -24056875 - AluJo SINE Alu -92 220 1 251 104 21 0 chr12 119830807 119830855 -23955600 + (TG)n Simple_repeat Simple_repeat 2 50 0 309 125 0 0 chr12 119831042 119831098 -23955357 + (TG)n Simple_repeat Simple_repeat 2 57 0 1871 174 0 16 chr12 119831676 119831981 -23954474 - AluJo SINE Alu -12 300 1 696 128 0 101 chr12 119832145 119832293 -23954162 + AluJo SINE Alu 2 134 -178 241 169 31 15 chr12 119832307 119832372 -23954083 + (TA)n Simple_repeat Simple_repeat 2 67 0 680 262 33 53 chr12 119832372 119832616 -23953839 - MIR SINE MIR -4 258 20 360 0 0 0 chr12 119832616 119832656 -23953799 + (TG)n Simple_repeat Simple_repeat 1 40 0 1822 166 0 3 chr12 119832663 119832946 -23953509 - AluJb SINE Alu -30 282 1 24 0 0 0 chr12 119833023 119833047 -23953408 + AT_rich Low_complexity Low_complexity 1 24 0 2253 125 0 0 chr12 119833047 119833342 -23953113 - AluSx SINE Alu -17 295 1 784 288 54 37 chr12 119833342 119833693 -23952762 - L1MC4a LINE L1 -1916 5892 5536 355 82 0 0 chr12 119833710 119833759 -23952696 - HY3 scRNA scRNA -52 49 1 247 288 98 42 chr12 119833760 119833975 -23952480 - L1MC4a LINE L1 -2321 5487 5261 859 150 0 0 chr12 119834232 119834365 -23952090 - FLAM_C SINE Alu 0 133 1 273 326 8 30 chr12 119834388 119834520 -23951935 - L1P LINE L1 -1131 5015 4887 401 276 212 10 chr12 119834561 119834764 -23951691 - MIR SINE MIR -1 261 18 1306 174 46 95 chr12 119834787 119834979 -23951476 - L1M4 LINE L1 -472 5706 5506 2053 91 0 50 chr12 119834979 119835277 -23951178 + AluSx SINE Alu 29 311 -1 1306 174 46 95 chr12 119835277 119835575 -23950880 - L1M4 LINE L1 -672 5506 5286 243 0 0 0 chr12 119835575 119835602 -23950853 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 989 175 0 90 chr12 119835637 119835848 -23950607 - AluJo SINE Alu -105 207 16 1316 176 9 14 chr12 119835874 119836096 -23950359 - AluJo SINE Alu -86 226 6 2441 100 0 3 chr12 119836107 119836417 -23950038 - AluSp SINE Alu -4 309 1 475 278 139 19 chr12 119836444 119836653 -23949802 - L2 LINE L2 -14 3258 3025 586 76 0 0 chr12 119836659 119836738 -23949717 + AluSg/x SINE Alu 213 291 -19 1511 147 120 19 chr12 119837887 119838146 -23948309 - AluJo SINE Alu -16 296 12 1118 88 0 0 chr12 119838317 119838453 -23948002 + AluSq SINE Alu 1 136 -177 2020 93 4 14 chr12 119838453 119838733 -23947722 + AluY SINE Alu 35 311 0 1034 126 20 0 chr12 119839111 119839268 -23947187 + AluSq SINE Alu 115 268 -45 768 215 16 0 chr12 119840025 119840195 -23946260 + MIR SINE MIR 59 231 -31 2226 95 0 0 chr12 119840295 119840591 -23945864 - AluSx SINE Alu -16 296 1 359 237 28 34 chr12 119840644 119840821 -23945634 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 311 306 51 69 chr12 119840821 119841096 -23945359 - L2 LINE L2 -162 3110 2841 1018 141 37 0 chr12 119841178 119841341 -23945114 - AluJo/FRAM SINE Alu -11 301 133 2118 105 7 0 chr12 119841342 119841638 -23944817 - AluSq SINE Alu -15 298 1 684 296 80 4 chr12 119841681 119841907 -23944548 - MIR SINE MIR 0 262 20 584 190 35 26 chr12 119842029 119842132 -23944323 + L2 LINE L2 3194 3300 -13 192 77 0 0 chr12 119842132 119842158 -23944297 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 584 190 35 26 chr12 119842158 119842170 -23944285 + L2 LINE L2 3300 3310 -3 187 265 59 0 chr12 119842425 119842493 -23943962 + MIR SINE MIR 75 146 -62 757 258 238 19 chr12 119843202 119843685 -23942770 + L2 LINE L2 2724 3306 -7 1979 139 3 0 chr12 119844178 119844473 -23941982 + AluSx SINE Alu 2 297 -15 262 232 101 0 chr12 119845198 119845267 -23941188 + MIR SINE MIR 93 168 -94 692 208 0 0 chr12 119845327 119845457 -23940998 - MIR SINE MIR -87 175 46 561 228 101 0 chr12 119845494 119845643 -23940812 - MIR SINE MIR -55 207 44 1213 144 0 0 chr12 119845659 119845847 -23940608 - AluSx SINE Alu -1 309 122 940 120 0 0 chr12 119845881 119846014 -23940441 - AluSx SINE Alu -179 133 1 414 162 111 34 chr12 119846074 119846191 -23940264 - MIR SINE MIR -20 242 117 581 154 30 24 chr12 119846499 119846668 -23939787 + CT-rich Low_complexity Low_complexity 5 174 0 1544 183 81 0 chr12 119846687 119847009 -23939446 - MLT2D LTR ERVL -66 348 1 894 242 31 77 chr12 119847022 119847184 -23939271 - MLT1L LTR MaLR -175 440 272 276 30 0 0 chr12 119847184 119847217 -23939238 + (TC)n Simple_repeat Simple_repeat 2 34 0 1604 166 0 22 chr12 119847217 119847495 -23938960 - AluJo SINE Alu -27 285 14 894 242 31 77 chr12 119847495 119847728 -23938727 - MLT1L LTR MaLR -341 274 9 329 265 54 61 chr12 119848243 119848321 -23938134 - MIR SINE MIR -41 221 144 2177 123 3 0 chr12 119848321 119848631 -23937824 - AluSx SINE Alu -1 311 1 329 265 54 61 chr12 119848631 119848699 -23937756 - MIR SINE MIR -118 144 72 1634 195 112 51 chr12 119848699 119849171 -23937284 - MLT1D LTR MaLR -3 502 2 329 265 54 61 chr12 119849171 119849229 -23937226 - MIR SINE MIR -190 72 15 2173 107 7 0 chr12 119849330 119849630 -23936825 - AluSg SINE Alu -8 302 1 855 246 12 48 chr12 119849638 119849890 -23936565 + MIR SINE MIR 15 257 -5 1997 117 3 7 chr12 119849920 119850211 -23936244 + AluSx SINE Alu 1 290 -22 313 247 0 14 chr12 119850306 119850379 -23936076 - MLT1J2 LTR MaLR -14 436 365 1495 185 46 11 chr12 119850758 119851123 -23935332 + L1MA9 LINE L1 5656 6026 -135 903 216 82 20 chr12 119851224 119851479 -23934976 + Charlie4 DNA MER1_type 3 273 -1688 914 134 0 0 chr12 119851493 119851627 -23934828 - AluSg/x SINE Alu -14 296 163 352 212 67 9 chr12 119852040 119852169 -23934286 - L1MC4 LINE L1 0 8041 7878 429 109 0 0 chr12 119852169 119852233 -23934222 + (TCC)n Simple_repeat Simple_repeat 3 66 0 842 223 65 34 chr12 119852238 119852260 -23934195 - L1MC4 LINE L1 -107 7935 7915 282 29 0 0 chr12 119852260 119852295 -23934160 + (CA)n Simple_repeat Simple_repeat 2 36 0 842 223 65 34 chr12 119852295 119852564 -23933891 - L1MC4 LINE L1 -127 7915 7635 481 223 127 30 chr12 119852572 119852738 -23933717 + MLT1H LTR MaLR 366 547 -2 342 213 75 11 chr12 119852755 119852849 -23933606 - MLT1L LTR MaLR -10 605 506 285 167 0 0 chr12 119852881 119852929 -23933526 - MLT2C1 LTR ERVL 0 397 350 560 185 21 31 chr12 119852946 119853238 -23933217 + CT-rich Low_complexity Low_complexity 1 289 0 212 122 24 0 chr12 119854202 119854243 -23932212 + G-rich Low_complexity Low_complexity 4 45 0 311 197 42 14 chr12 119854408 119854479 -23931976 + L2 LINE L2 3241 3313 0 207 232 34 5 chr12 119854616 119854706 -23931749 - MIR SINE MIR -70 138 45 325 323 24 16 chr12 119855598 119855722 -23930733 - MIR3 SINE MIR -53 155 31 265 262 124 55 chr12 119855731 119855876 -23930579 + L2 LINE L2 3007 3161 -111 617 211 98 69 chr12 119855933 119856163 -23930292 - MIR SINE MIR -12 250 18 851 158 14 5 chr12 119856918 119857133 -23929322 + (TCCA)n Simple_repeat Simple_repeat 1 217 0 181 137 20 20 chr12 119857148 119857187 -23929268 + CT-rich Low_complexity Low_complexity 4 45 -9 2139 133 0 0 chr12 119857187 119857495 -23928960 - AluSc SINE Alu -1 308 1 181 137 20 20 chr12 119857495 119857506 -23928949 + CT-rich Low_complexity Low_complexity 44 54 0 909 274 36 73 chr12 119857537 119858069 -23928386 - L2 LINE L2 0 3272 2752 221 313 0 38 chr12 119858116 119858196 -23928259 - L2 LINE L2 -10 3303 3227 260 305 68 17 chr12 119858821 119858939 -23927516 + MER5B DNA MER1_type 1 124 -54 597 277 11 37 chr12 119859069 119859257 -23927198 - L2 LINE L2 0 3313 3131 1255 306 33 16 chr12 119859257 119859767 -23926688 + L1ME3A LINE L1 5504 5950 -220 1523 167 56 14 chr12 119859878 119860165 -23926290 - AluJo SINE Alu -13 299 1 1392 151 0 0 chr12 119860309 119860521 -23925934 - AluJb SINE Alu -16 296 85 583 257 64 5 chr12 119860524 119860726 -23925729 - L2 LINE L2 -239 3074 2861 390 236 204 16 chr12 119861098 119861139 -23925316 - MIR SINE MIR -12 250 218 1968 121 14 0 chr12 119861139 119861421 -23925034 - AluSx SINE Alu -16 296 11 390 236 204 16 chr12 119861421 119861570 -23924885 - MIR SINE MIR -44 218 24 327 25 0 0 chr12 119861877 119861917 -23924538 + (TG)n Simple_repeat Simple_repeat 2 41 0 2970 166 31 20 chr12 119862131 119862681 -23923774 - L1MB2 LINE L1 -1 6170 5615 459 202 29 10 chr12 119862708 119862786 -23923669 + MLT1B LTR MaLR 34 116 -258 1227 94 3 98 chr12 119862786 119863114 -23923341 + AluSx SINE Alu 1 297 -15 459 202 29 10 chr12 119863114 119863139 -23923316 + MLT1B LTR MaLR 116 139 -235 699 197 21 7 chr12 119863276 119863418 -23923037 + MLT1B LTR MaLR 222 365 -25 672 134 22 8 chr12 119863418 119863552 -23922903 + CT-rich Low_complexity Low_complexity 4 139 0 1920 148 13 3 chr12 119863571 119863876 -23922579 - AluSx SINE Alu -4 308 1 709 133 72 72 chr12 119863909 119864075 -23922380 - L1MB2 LINE L1 -552 5619 5454 308 269 28 17 chr12 119864158 119864279 -23922176 - MIR SINE MIR -63 145 37 715 282 14 14 chr12 119864335 119864548 -23921907 - MIR SINE MIR -1 261 49 906 158 0 0 chr12 119864741 119864880 -23921575 - AluJo SINE Alu -173 139 1 688 248 105 5 chr12 119865504 119865581 -23920874 + MIR SINE MIR 28 96 -166 1944 141 0 16 chr12 119865581 119865886 -23920569 - AluSx SINE Alu -12 300 1 688 248 105 5 chr12 119865886 119866018 -23920437 + MIR SINE MIR 96 258 -4 816 167 25 19 chr12 119866019 119866181 -23920274 + MIR SINE MIR 67 229 -33 251 53 0 26 chr12 119866204 119866242 -23920213 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 2048 120 0 17 chr12 119866416 119866715 -23919740 + AluSx SINE Alu 1 294 -18 243 232 12 37 chr12 119867659 119867741 -23918714 + MIR3 SINE MIR 82 161 -47 353 277 46 39 chr12 119867832 119867962 -23918493 + MER5A DNA MER1_type 57 187 -2 1570 178 10 10 chr12 119867981 119868284 -23918171 - AluJo SINE Alu -9 303 1 240 35 0 0 chr12 119870511 119870540 -23915915 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 855 155 0 7 chr12 119870540 119870682 -23915773 - FRAM SINE Alu 0 40 1 726 135 0 0 chr12 119870683 119870787 -23915668 - AluJb SINE Alu -207 105 2 2095 107 3 0 chr12 119870794 119871084 -23915371 - AluSg SINE Alu -19 291 1 1026 216 140 31 chr12 119871432 119871730 -23914725 - L2 LINE L2 0 3313 3049 1838 154 30 0 chr12 119871730 119872028 -23914427 + AluJb SINE Alu 3 309 -3 1026 216 140 31 chr12 119872028 119872341 -23914114 - L2 LINE L2 -264 3049 2633 214 278 19 0 chr12 119873019 119873073 -23913382 - MIR SINE MIR -118 144 90 452 287 0 0 chr12 119873860 119873968 -23912487 + MIR SINE MIR 37 144 -64 815 238 21 5 chr12 119873968 119874157 -23912298 + MER117 DNA MER1_type 6 197 0 1002 117 76 23 chr12 119874195 119874366 -23912089 + L1PA6 LINE L1 5971 6150 -4 1070 231 68 13 chr12 119874367 119874454 -23912001 - L2 LINE L2 -158 3155 3074 1478 190 23 17 chr12 119874454 119874584 -23911871 + AluJo SINE Alu 1 129 -183 234 0 0 0 chr12 119874584 119874610 -23911845 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1478 190 23 17 chr12 119874610 119874779 -23911676 + AluJo SINE Alu 129 302 -10 1070 231 68 13 chr12 119874779 119875100 -23911355 - L2 LINE L2 -239 3074 2709 313 256 23 23 chr12 119875766 119875852 -23910603 + MER117 DNA MER1_type 110 195 -2 290 137 315 0 chr12 119876215 119876288 -23910167 - MIR SINE MIR -54 208 113 233 374 6 0 chr12 119876939 119877105 -23909350 + (TG)n Simple_repeat Simple_repeat 2 168 0 310 222 5 101 chr12 119877179 119877377 -23909078 + (TG)n Simple_repeat Simple_repeat 2 180 0 411 194 32 33 chr12 119877758 119877879 -23908576 - MIR SINE MIR -67 141 71 400 345 36 27 chr12 119877994 119878217 -23908238 - MIR SINE MIR -18 244 20 327 287 70 0 chr12 119878337 119878480 -23907975 + MER103 DNA DNA 4 156 -10 353 261 117 0 chr12 119879933 119880044 -23906411 - L1M4 LINE L1 -925 5221 5098 923 163 35 12 chr12 119880173 119880345 -23906110 + FRAM SINE Alu 1 176 0 464 268 92 7 chr12 119881304 119881457 -23904998 - MIR SINE MIR -55 207 42 455 252 7 42 chr12 119881493 119881636 -23904819 - Charlie8 DNA MER1_type -2249 168 31 2121 103 3 0 chr12 119881664 119881954 -23904501 + AluSg SINE Alu 1 291 -19 726 135 0 0 chr12 119881961 119882065 -23904390 + AluJb SINE Alu 2 105 -207 865 149 0 7 chr12 119882066 119882241 -23904214 + FRAM SINE Alu 1 73 0 1570 178 10 10 chr12 119884468 119884771 -23901684 + AluJo SINE Alu 1 303 -9 343 285 46 39 chr12 119884790 119884920 -23901535 - MER5A DNA MER1_type -2 187 57 243 232 12 37 chr12 119885011 119885093 -23901362 - MIR3 SINE MIR -47 161 82 2048 120 0 17 chr12 119886037 119886336 -23900119 - AluSx SINE Alu -18 294 1 251 53 0 26 chr12 119886510 119886548 -23899907 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 816 167 25 19 chr12 119886571 119886733 -23899722 - MIR SINE MIR -33 229 67 688 248 105 5 chr12 119886734 119886866 -23899589 - MIR SINE MIR -4 258 96 1944 141 0 16 chr12 119886866 119887171 -23899284 + AluSx SINE Alu 1 300 -12 688 248 105 5 chr12 119887171 119887248 -23899207 - MIR SINE MIR -166 96 28 1817 137 19 39 chr12 119887872 119888014 -23898441 + AluJo SINE Alu 1 144 -168 2000 138 0 0 chr12 119888014 119888311 -23898144 + AluSx SINE Alu 1 297 -15 1817 137 19 39 chr12 119888311 119888475 -23897980 + AluJo SINE Alu 144 301 -11 311 306 51 69 chr12 119888557 119888832 -23897623 + L2 LINE L2 2841 3110 -162 359 237 28 34 chr12 119888832 119889009 -23897446 + (TTATA)n Simple_repeat Simple_repeat 2 177 0 2226 95 0 0 chr12 119889062 119889358 -23897097 + AluSx SINE Alu 1 296 -16 768 215 16 0 chr12 119889458 119889628 -23896827 - MIR SINE MIR -31 231 59 2139 97 10 3 chr12 119890230 119890540 -23895915 - AluSx SINE Alu 0 312 1 684 296 80 4 chr12 119890583 119890809 -23895646 - MIR SINE MIR 0 262 20 584 190 35 26 chr12 119890931 119891034 -23895421 + L2 LINE L2 3194 3300 -13 192 77 0 0 chr12 119891034 119891060 -23895395 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 584 190 35 26 chr12 119891060 119891072 -23895383 + L2 LINE L2 3300 3310 -3 187 265 59 0 chr12 119891327 119891395 -23895060 + MIR SINE MIR 75 146 -62 757 259 238 19 chr12 119892104 119892587 -23893868 + L2 LINE L2 2724 3306 -7 1927 139 7 0 chr12 119893082 119893376 -23893079 + AluSx SINE Alu 2 297 -15 262 232 101 0 chr12 119894100 119894169 -23892286 + MIR SINE MIR 93 168 -94 692 208 0 0 chr12 119894227 119894357 -23892098 - MIR SINE MIR -87 175 46 514 236 108 0 chr12 119894394 119894542 -23891913 - MIR SINE MIR -55 207 44 1219 143 0 0 chr12 119894558 119894747 -23891708 - AluSx SINE Alu 0 310 122 925 128 0 0 chr12 119894783 119894916 -23891539 - AluSx SINE Alu -179 133 1 396 210 109 17 chr12 119894976 119895095 -23891360 - MIR SINE MIR -20 242 113 318 203 43 0 chr12 119895989 119896058 -23890397 + MIR3 SINE MIR 90 161 -47 442 273 68 90 chr12 119896258 119896373 -23890082 + Charlie8 DNA MER1_type 3 119 -211 1761 139 18 0 chr12 119896373 119896654 -23889801 + AluJo SINE Alu 1 286 -26 442 273 68 90 chr12 119896654 119896816 -23889639 + Charlie8 DNA MER1_type 119 274 -56 784 243 62 41 chr12 119897072 119897315 -23889140 + MIR SINE MIR 15 262 0 2137 95 0 20 chr12 119897331 119897635 -23888820 - AluSx SINE Alu -14 298 1 417 318 110 39 chr12 119898101 119898406 -23888049 + L2 LINE L2 2837 3181 -132 1946 120 3 3 chr12 119898406 119898712 -23887743 + AluSx SINE Alu 3 308 0 417 318 110 39 chr12 119898712 119898814 -23887641 + L2 LINE L2 3181 3274 -39 438 205 92 11 chr12 119898998 119899142 -23887313 - MIR SINE MIR -63 145 29 516 258 38 0 chr12 119899282 119899414 -23887041 + MIR SINE MIR 46 182 -80 2030 157 0 3 chr12 119899926 119900238 -23886217 + AluJb SINE Alu 2 312 0 344 231 130 9 chr12 119900257 119900365 -23886090 - MIR SINE MIR -138 124 4 374 255 94 0 chr12 119901115 119901221 -23885234 - MIR SINE MIR -112 150 35 2023 130 33 0 chr12 119901821 119902121 -23884334 + AluSx SINE Alu 1 310 -2 426 169 13 0 chr12 119903102 119903179 -23883276 - MIR SINE MIR -63 145 68 1315 196 80 10 chr12 119903285 119903597 -23882858 - L1MB8 LINE L1 0 6178 5845 328 145 0 79 chr12 119903620 119903676 -23882779 - MER6 DNA MER2_type -58 807 757 1967 155 3 0 chr12 119903676 119903986 -23882469 + AluSx SINE Alu 1 311 -1 328 145 0 79 chr12 119903986 119904005 -23882450 - MER6 DNA MER2_type -108 757 738 * 446 169 0 0 chr12 119904003 119904074 -23882381 - MER6 DNA MER2_type -139 5 -65 1381 146 39 0 chr12 119904074 119904328 -23882127 - L1MB8 LINE L1 -355 5829 5566 821 296 4 18 chr12 119904373 119904599 -23881856 + MIR SINE MIR 12 234 -28 255 274 0 0 chr12 119904643 119904705 -23881750 + MIR SINE MIR 84 145 -117 379 196 80 36 chr12 119905354 119905466 -23880989 - MIR SINE MIR -87 175 59 627 297 38 5 chr12 119905523 119905708 -23880747 + MIR SINE MIR 51 241 -21 1794 256 101 2 chr12 119906536 119906981 -23879474 + MLT1K LTR MaLR 85 573 -15 810 217 27 76 chr12 119907387 119907451 -23879004 - MIR SINE MIR -7 255 189 1899 154 0 3 chr12 119907451 119907756 -23878699 - AluJb SINE Alu -8 304 1 810 217 27 76 chr12 119907756 119907954 -23878501 - MIR SINE MIR -73 189 6 1619 159 0 4 chr12 119908098 119908356 -23878099 - AluJb SINE Alu -53 259 3 978 296 41 41 chr12 119908384 119909118 -23877337 - L1MEc LINE L1 -4952 1358 617 1937 142 3 0 chr12 119909319 119909615 -23876840 - AluSx SINE Alu -15 297 1 1999 136 7 0 chr12 119909670 119909972 -23876483 + AluSx SINE Alu 1 304 -8 429 266 194 31 chr12 119910294 119910516 -23875939 + MIR SINE MIR 4 261 -1 267 326 8 30 chr12 119910557 119910689 -23875766 + L1P LINE L1 4887 5015 -1131 913 150 0 0 chr12 119910712 119910845 -23875610 + FLAM_C SINE Alu 1 133 0 310 327 94 25 chr12 119910893 119911095 -23875360 + L1MC4a LINE L1 5038 5253 -893 251 293 98 42 chr12 119911102 119911317 -23875138 + L1MC4a LINE L1 5261 5487 -2321 353 82 0 0 chr12 119911318 119911367 -23875088 + HY3 scRNA scRNA 1 49 -52 811 302 48 31 chr12 119911384 119911735 -23874720 + L1MC4a LINE L1 5536 5892 -1916 2073 138 3 0 chr12 119911735 119912046 -23874409 + AluSx SINE Alu 1 312 0 1705 166 0 3 chr12 119912130 119912413 -23874042 + AluJb SINE Alu 1 282 -30 360 0 0 0 chr12 119912420 119912460 -23873995 + (CA)n Simple_repeat Simple_repeat 1 40 0 666 262 33 53 chr12 119912460 119912704 -23873751 + MIR SINE MIR 20 258 -4 180 127 55 0 chr12 119912709 119912764 -23873691 + (TA)n Simple_repeat Simple_repeat 1 58 0 754 128 0 101 chr12 119912783 119912931 -23873524 - AluJo SINE Alu -178 134 2 1845 175 0 13 chr12 119913095 119913410 -23873045 + AluJo SINE Alu 1 311 -1 327 121 0 0 chr12 119913976 119914034 -23872421 + (CA)n Simple_repeat Simple_repeat 2 59 0 251 104 21 0 chr12 119914221 119914269 -23872186 + (CA)n Simple_repeat Simple_repeat 2 50 0 336 147 0 0 chr12 119914659 119914734 -23871721 + (CA)n Simple_repeat Simple_repeat 2 76 0 344 307 115 32 chr12 119914755 119915203 -23871252 - L2 LINE L2 0 3272 2784 224 221 15 15 chr12 119916732 119916800 -23869655 - MIR SINE MIR -64 144 77 301 308 21 35 chr12 119916985 119917128 -23869327 + MIR SINE MIR 50 190 -72 632 234 86 50 chr12 119917439 119917684 -23868771 + L2 LINE L2 2857 3115 -198 2255 112 0 3 chr12 119917684 119917997 -23868458 - AluSx SINE Alu 0 312 1 632 234 86 50 chr12 119917997 119918029 -23868426 + L2 LINE L2 3115 3144 -169 391 218 20 37 chr12 119919107 119919248 -23867207 + MIR3 SINE MIR 81 262 0 252 263 92 0 chr12 119920221 119920297 -23866158 - MIR3 SINE MIR -49 159 77 649 266 9 52 chr12 119922067 119922300 -23864155 - MIR SINE MIR 0 262 40 * 754 277 9 24 chr12 119922280 119922493 -23863962 + MIR SINE MIR 50 259 -3 1602 114 80 48 chr12 119923115 119923404 -23863051 - AluSq SINE Alu -15 298 1 313 276 23 11 chr12 119924091 119924178 -23862277 + MIR SINE MIR 163 250 -12 820 282 24 16 chr12 119924290 119924542 -23861913 + MIR SINE MIR 8 261 -1 561 261 43 0 chr12 119924961 119925099 -23861356 - MER63A DNA MER1_type -4 206 63 1847 149 3 7 chr12 119925282 119925578 -23860877 + AluJo SINE Alu 1 295 -17 844 144 0 0 chr12 119925580 119925698 -23860757 + FLAM_C SINE Alu 1 118 -15 1961 147 7 0 chr12 119925732 119926038 -23860417 + AluSx SINE Alu 1 308 -4 399 305 73 34 chr12 119926085 119926262 -23860193 + L1ME4a LINE L1 5769 5952 -169 281 309 48 67 chr12 119926265 119926430 -23860025 - L2 LINE L2 -2 3270 3109 588 186 0 186 chr12 119926520 119926735 -23859720 - FAM SINE Alu 0 175 1 1960 117 0 69 chr12 119926738 119926935 -23859520 - AluSx SINE Alu -1 311 145 2015 89 0 0 chr12 119926935 119927206 -23859249 - AluY SINE Alu -6 305 35 1960 117 0 69 chr12 119927206 119927342 -23859113 - AluSx SINE Alu -167 145 1 1409 126 0 23 chr12 119927513 119927727 -23858728 + AluJo SINE Alu 12 220 -92 254 139 0 23 chr12 119927727 119927770 -23858685 + FLAM SINE Alu 86 127 -6 619 76 0 0 chr12 119928920 119928999 -23857456 - AluSg/x SINE Alu -19 290 212 505 273 139 19 chr12 119929005 119929214 -23857241 + L2 LINE L2 3025 3258 -14 2299 100 0 3 chr12 119929241 119929551 -23856904 + AluSp SINE Alu 1 309 -4 1209 180 9 14 chr12 119929562 119929784 -23856671 + AluJo SINE Alu 6 226 -86 916 175 0 90 chr12 119929810 119930021 -23856434 + AluJo SINE Alu 16 207 -105 243 0 0 0 chr12 119930056 119930083 -23856372 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1445 143 35 177 chr12 119930083 119930381 -23856074 + L1MC/D LINE L1 5286 5488 -754 1925 91 0 50 chr12 119930381 119930679 -23855776 - AluSx SINE Alu -1 311 29 1445 143 35 177 chr12 119930679 119930871 -23855584 + L1MC/D LINE L1 5488 5706 -536 2770 164 45 106 chr12 119930891 119930938 -23855517 + L1MD2 LINE L1 5658 5706 -653 1475 179 39 32 chr12 119930938 119931223 -23855232 - AluJb SINE Alu -25 287 1 2770 164 45 106 chr12 119931223 119931495 -23854960 + L1MD2 LINE L1 5706 5993 -366 1765 155 3 7 chr12 119931495 119931786 -23854669 - AluJb SINE Alu -22 290 1 2770 164 45 106 chr12 119931786 119932206 -23854249 + L1MD2 LINE L1 5993 6353 -6 * 2798 203 29 54 chr12 119932194 119932206 -23854249 + L1ME1 LINE L1 5414 5425 -741 1768 158 10 0 chr12 119932206 119932503 -23853952 + AluJb SINE Alu 1 300 -12 2798 203 29 54 chr12 119932503 119932545 -23853910 + L1ME1 LINE L1 5425 5467 -699 2090 107 17 3 chr12 119932545 119932836 -23853619 - AluSx SINE Alu -17 295 1 2798 203 29 54 chr12 119932836 119933544 -23852911 + L1ME1 LINE L1 5467 6158 -8 2027 125 0 3 chr12 119933570 119933874 -23852581 + AluSx SINE Alu 1 303 -9 1890 155 0 7 chr12 119933968 119933997 -23852458 - AluJo SINE Alu -4 308 280 189 0 0 0 chr12 119933997 119934018 -23852437 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1890 155 0 7 chr12 119934018 119934298 -23852157 - AluJo SINE Alu -32 280 1 230 308 64 0 chr12 119934565 119934643 -23851812 + MIR SINE MIR 162 244 -18 2116 106 0 0 chr12 119934649 119934942 -23851513 + AluSx SINE Alu 1 293 -19 269 136 0 0 chr12 119935749 119935793 -23850662 - MIR SINE MIR -110 152 109 184 103 0 0 chr12 119936007 119936036 -23850419 + MIR SINE MIR 118 146 -116 748 242 209 14 chr12 119936594 119936740 -23849715 + L2 LINE L2 2958 3074 -239 207 0 0 0 chr12 119936740 119936763 -23849692 + (TTA)n Simple_repeat Simple_repeat 2 24 0 748 242 209 14 chr12 119936763 119936913 -23849542 + L2 LINE L2 3074 3312 -1 2112 108 0 3 chr12 119936921 119937207 -23849248 + AluSx SINE Alu 3 287 -25 21 0 0 0 chr12 119937208 119937229 -23849226 + AT_rich Low_complexity Low_complexity 1 21 0 1593 144 47 50 chr12 119937232 119937531 -23848924 + AluJo SINE Alu 3 300 -12 273 326 23 0 chr12 119937801 119937887 -23848568 + MIR SINE MIR 72 159 -103 525 305 109 43 chr12 119937922 119938316 -23848139 - L2 LINE L2 -37 3235 2816 228 218 13 64 chr12 119938643 119938721 -23847734 - Charlie8 DNA MER1_type -3 2414 2341 1908 84 7 28 chr12 119939317 119939603 -23846852 - AluJb SINE Alu -24 288 9 261 231 0 121 chr12 119939616 119939707 -23846748 - MIR SINE MIR -74 188 109 1848 117 32 4 chr12 119939715 119939996 -23846459 + AluJo SINE Alu 1 289 -23 2132 107 0 0 chr12 119940602 119940902 -23845553 + AluSx SINE Alu 2 301 -11 1967 114 28 3 chr12 119941643 119941933 -23844522 - AluSx SINE Alu -14 298 2 467 138 25 12 chr12 119942042 119942122 -23844333 - LTR2B LTR ERV1 0 490 410 428 282 14 0 chr12 119942241 119942379 -23844076 - MIR SINE MIR -61 147 62 1104 274 86 17 chr12 119942758 119943109 -23843346 - L2 LINE L2 -8 3305 2931 418 311 68 23 chr12 119943110 119943242 -23843213 - L2 LINE L2 -1 3271 3134 305 282 24 12 chr12 119943343 119943428 -23843027 + L2 LINE L2 3187 3272 0 697 234 6 13 chr12 119944165 119944323 -23842132 + MIR SINE MIR 23 179 -83 444 266 9 0 chr12 119944325 119944434 -23842021 - MER94 DNA DNA -9 125 16 489 268 94 0 chr12 119944722 119944860 -23841595 - MIR SINE MIR -49 213 63 316 324 20 0 chr12 119944863 119944965 -23841490 - MIR SINE MIR -55 207 104 2728 121 11 38 chr12 119944976 119945422 -23841033 - Tigger2a DNA MER2_type 0 434 1 833 223 83 9 chr12 119945740 119945962 -23840493 - MIR SINE MIR 0 262 20 333 104 0 0 chr12 119948152 119948200 -23838255 - MADE1 DNA Mariner 0 80 33 631 184 30 87 chr12 119948201 119948379 -23838076 - L1M3 LINE L1 -378 5793 5626 332 263 66 29 chr12 119948379 119948516 -23837939 - L1ME4a LINE L1 -236 5885 5744 568 278 42 37 chr12 119948825 119949066 -23837389 - L1ME LINE L1 -370 5794 5553 2821 227 81 4 chr12 119949080 119949785 -23836670 - L1ME3A LINE L1 -8 6162 5404 354 276 46 74 chr12 119949803 119949935 -23836520 - L1ME LINE L1 -313 5808 5674 1432 108 7 95 chr12 119949935 119950230 -23836225 - L1MA2 LINE L1 0 6304 6036 354 276 46 74 chr12 119950230 119950380 -23836075 - L1ME LINE L1 -447 5674 5534 2264 155 0 12 chr12 119950628 119950969 -23835486 - MER1B DNA MER1_type 0 337 1 292 263 168 11 chr12 119951059 119951154 -23835301 + MIR SINE MIR 34 143 -65 2820 238 63 7 chr12 119951209 119951982 -23834473 + L1ME3 LINE L1 5345 6161 -1 624 266 83 0 chr12 119952533 119952725 -23833730 + MIR SINE MIR 42 249 -13 1023 199 43 0 chr12 119952809 119953020 -23833435 + MIR SINE MIR 1 220 -42 246 293 21 107 chr12 119953078 119953218 -23833237 - MER5A DNA MER1_type -4 174 47 209 293 150 20 chr12 119953213 119953360 -23833095 - MIR3 SINE MIR -39 169 4 * 260 194 111 28 chr12 119953852 119953924 -23832531 + MIR3 SINE MIR 109 186 -22 563 209 39 8 chr12 119954040 119954169 -23832286 + MIR SINE MIR 44 176 -86 224 183 0 72 chr12 119955442 119955537 -23830918 - MIR SINE MIR -83 125 42 590 295 51 32 chr12 119955786 119955814 -23830641 + MIR SINE MIR 10 36 -226 1140 272 104 9 chr12 119955814 119956237 -23830218 - LTR16B LTR ERVL 0 464 2 590 295 51 32 chr12 119956237 119956425 -23830030 + MIR SINE MIR 36 230 -32 394 218 0 0 chr12 119956527 119956605 -23829850 + MIR SINE MIR 77 154 -108 1247 256 98 37 chr12 119956616 119957046 -23829409 - LTR16B LTR ERVL 0 464 9 222 331 36 50 chr12 119957662 119957801 -23828654 - MIR SINE MIR -78 184 48 1813 173 0 3 chr12 119957861 119958174 -23828281 - AluJo SINE Alu 0 312 1 289 174 0 0 chr12 119958174 119958220 -23828235 - L2 LINE L2 -6 3307 3262 386 320 199 9 chr12 119958229 119958460 -23827995 - L2 LINE L2 -338 2976 2702 567 261 170 5 chr12 119958582 119958800 -23827655 + MIR SINE MIR 8 261 -1 408 249 160 61 chr12 119959108 119959321 -23827134 + L1ME4a LINE L1 5804 6037 -84 2040 109 3 0 chr12 119959443 119959747 -23826708 - AluSx SINE Alu 0 305 1 315 71 0 0 chr12 119961479 119961521 -23824934 + (CA)n Simple_repeat Simple_repeat 2 43 0 242 289 23 70 chr12 119961815 119961943 -23824512 + CT-rich Low_complexity Low_complexity 6 127 0 202 204 0 0 chr12 119962400 119962444 -23824011 + CT-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 119962555 119962578 -23823877 + AT_rich Low_complexity Low_complexity 1 23 0 230 250 0 0 chr12 119963295 119963339 -23823116 - MIR SINE MIR -2 260 217 376 273 55 77 chr12 119963535 119963718 -23822737 - MIR3 SINE MIR -7 201 23 2066 127 0 0 chr12 119963864 119964164 -23822291 - AluSx SINE Alu -12 300 1 2200 123 0 0 chr12 119964404 119964714 -23821741 + AluSx SINE Alu 1 310 -2 657 225 13 0 chr12 119964890 119965041 -23821414 - MER117 DNA MER1_type -43 154 2 494 259 165 0 chr12 119965271 119965441 -23821014 + MIR SINE MIR 53 250 -12 642 178 0 8 chr12 119965916 119966034 -23820421 + L1MA3 LINE L1 6189 6305 0 2098 119 3 3 chr12 119966042 119966344 -23820111 + AluSq SINE Alu 1 302 -11 2244 85 20 3 chr12 119966403 119966708 -23819747 + AluSg SINE Alu 1 310 0 212 211 19 19 chr12 119966729 119966781 -23819674 + MIR SINE MIR 65 116 -92 21 36 0 0 chr12 119967195 119967223 -23819232 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 119967259 119967280 -23819175 + AT_rich Low_complexity Low_complexity 1 21 0 769 188 0 0 chr12 119967312 119967445 -23819010 - FLAM_C SINE Alu 0 133 1 1724 126 15 23 chr12 119967462 119967786 -23818669 - MER4A LTR ERV1 -26 638 261 622 71 31 31 chr12 119967786 119967884 -23818571 - MER4A LTR ERV1 -566 98 1 3909 110 66 27 chr12 119967889 119968490 -23817965 - MER4A-int LTR ERV1 -1 6597 5966 1585 219 56 43 chr12 119968490 119968933 -23817522 + LTR2 LTR ERV1 1 449 0 3909 110 66 27 chr12 119968933 119968996 -23817459 - MER4A-int LTR ERV1 -632 5966 5907 1567 224 12 29 chr12 119969151 119969444 -23817011 + L1M4 LINE L1 2639 2924 -3222 2006 131 0 0 chr12 119969444 119969741 -23816714 + AluJo SINE Alu 1 297 -15 1567 224 12 29 chr12 119969741 119969863 -23816592 + L1M4 LINE L1 2924 3047 -3099 272 143 20 0 chr12 119969866 119969915 -23816540 + L1MC2 LINE L1 5998 6047 -297 1480 166 75 4 chr12 119969917 119970287 -23816168 - MER66A LTR ERV1 -3 475 27 1317 163 50 35 chr12 119970294 119970577 -23815878 + L1MC2 LINE L1 6043 6329 -15 1196 179 9 0 chr12 119970578 119970796 -23815659 + AluJo SINE Alu 89 308 -4 240 311 74 20 chr12 119970865 119971013 -23815442 + L1ME4a LINE L1 5947 6102 -19 180 0 0 0 chr12 119971629 119971649 -23814806 + (GA)n Simple_repeat Simple_repeat 1 20 0 190 256 85 49 chr12 119971745 119971827 -23814628 + MER5A DNA MER1_type 105 189 0 347 250 0 0 chr12 119971956 119972024 -23814431 + MIR SINE MIR 71 138 -124 1033 180 63 27 chr12 119972034 119972256 -23814199 - MER61E LTR ERV1 0 569 340 249 196 0 39 chr12 119972300 119972351 -23814104 - MER61E LTR ERV1 -404 165 117 180 247 65 65 chr12 119972494 119972567 -23813888 + MIR SINE MIR 160 232 -30 714 262 78 29 chr12 119972567 119972811 -23813644 + MIR SINE MIR 4 259 -3 214 356 0 0 chr12 119973569 119973670 -23812785 + MIR SINE MIR 91 191 -71 1351 193 3 41 chr12 119973722 119974017 -23812438 + AluJo SINE Alu 1 284 -28 457 244 63 55 chr12 119974046 119974173 -23812282 + MER119 DNA MER1_type 7 134 -449 291 268 71 31 chr12 119974241 119974368 -23812087 + MER119 DNA MER1_type 451 582 -1 2154 128 0 0 chr12 119974431 119974736 -23811719 + AluSx SINE Alu 1 305 -7 740 279 162 10 chr12 119974764 119975246 -23811209 - L2 LINE L2 -189 3124 2553 382 340 6 19 chr12 119975622 119975781 -23810674 + G-rich Low_complexity Low_complexity 2 158 0 522 184 61 0 chr12 119975784 119975882 -23810573 + L2 LINE L2 3210 3313 0 198 103 0 0 chr12 119975889 119975918 -23810537 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 270 0 22 chr12 119975984 119976073 -23810382 + MIR SINE MIR 52 138 -124 245 264 38 159 chr12 119976159 119976398 -23810057 - MIR SINE MIR 0 262 53 1611 170 0 7 chr12 119976401 119976712 -23809743 + AluJb SINE Alu 1 309 0 252 188 21 0 chr12 119976744 119976792 -23809663 + L2 LINE L2 3265 3313 0 619 301 11 23 chr12 119976938 119977114 -23809341 + MER20B DNA MER1_type 2 175 -608 1135 273 112 22 chr12 119977296 119978115 -23808340 - L1MEd LINE L1 -4584 1726 796 27 0 0 0 chr12 119978118 119978145 -23808310 + AT_rich Low_complexity Low_complexity 1 27 0 6405 126 15 29 chr12 119978294 119979085 -23807370 - L1PB1 LINE L1 0 6151 5350 1311 54 0 6 chr12 119979085 119979251 -23807204 - L1PA4 LINE L1 0 6155 5991 6405 126 15 29 chr12 119979251 119980177 -23806278 - L1PB1 LINE L1 -801 5350 4442 464 318 82 26 chr12 119980179 119980412 -23806043 - L1MEd LINE L1 -5295 824 579 428 323 92 18 chr12 119980423 119980587 -23805868 - MIR SINE MIR -70 192 17 1112 204 19 28 chr12 119980588 119980804 -23805651 - MER58A DNA MER1_type -1 223 10 447 337 25 10 chr12 119981178 119981374 -23805081 - MIR SINE MIR -12 250 52 772 295 4 13 chr12 119981467 119981731 -23804724 - MIR SINE MIR 0 262 3 358 241 0 46 chr12 119982276 119982384 -23804071 - MIR SINE MIR 0 262 160 1914 135 77 14 chr12 119982394 119982926 -23803529 - L1PB4 LINE L1 -7 6167 5568 542 231 82 8 chr12 119982927 119983061 -23803394 - MIR SINE MIR -115 147 4 1287 246 52 45 chr12 119983219 119983646 -23802809 - LTR16A LTR ERVL 0 450 21 358 282 121 20 chr12 119983917 119984066 -23802389 - MIR3 SINE MIR -29 179 16 621 150 0 44 chr12 119984325 119984438 -23802017 - L2 LINE L2 0 3313 3206 209 167 28 0 chr12 119984470 119984506 -23801949 - L2 LINE L2 -82 3231 3195 1147 201 78 45 chr12 119984615 119984924 -23801531 + MER33 DNA MER1_type 6 324 0 620 292 10 21 chr12 119985140 119985332 -23801123 - MIR SINE MIR -62 200 11 627 192 67 17 chr12 119985392 119985512 -23800943 - MLT2B1 LTR ERVL -234 286 161 * 864 110 8 0 chr12 119985511 119985638 -23800817 - MLT2B2 LTR ERVL -387 128 1 590 344 14 22 chr12 119985810 119986086 -23800369 - ERVL LTR ERVL -2370 3394 3121 * 1824 269 78 27 chr12 119986081 119986713 -23799742 - ERVL LTR ERVL -2667 2329 1666 566 200 221 47 chr12 119986943 119987178 -23799277 - ERVL LTR ERVL -3672 1324 1049 897 187 0 6 chr12 119987187 119987353 -23799102 - AluJo SINE Alu -125 187 23 2748 158 45 12 chr12 119987445 119988105 -23798350 - L1M3 LINE L1 -379 5789 5107 1605 161 11 0 chr12 119988116 119988389 -23798066 + L1M3 LINE L1 4849 5124 -1022 956 279 66 50 chr12 119988397 119989021 -23797434 - L1M3 LINE L1 -1164 4982 4349 383 298 64 68 chr12 119989769 119989886 -23796569 + MIR SINE MIR 28 144 -118 1642 134 4 0 chr12 119989886 119990165 -23796290 + AluJo SINE Alu 37 316 0 383 298 64 68 chr12 119990165 119990280 -23796175 + MIR SINE MIR 144 261 -1 328 282 13 0 chr12 119990285 119990363 -23796092 - L2 LINE L2 -6 3266 3188 552 200 0 18 chr12 119990523 119990633 -23795822 - FLAM_C SINE Alu -34 109 2 4562 128 175 28 chr12 119990703 119991694 -23794761 - MER11B LTR ERVK 0 1236 1 392 219 0 42 chr12 119991991 119992087 -23794368 - MLT1J2 LTR MaLR 0 450 359 728 254 206 26 chr12 119992745 119993210 -23793245 - MLT1H LTR MaLR 0 549 1 924 225 0 0 chr12 119993890 119994059 -23792396 - MIR SINE MIR -13 249 81 499 235 7 59 chr12 119994219 119994274 -23792181 - MIR SINE MIR -37 171 115 3073 124 2 2 chr12 119994274 119994702 -23791753 + MSTA LTR MaLR 1 428 0 499 235 7 59 chr12 119994702 119994823 -23791632 - MIR SINE MIR -93 115 3 325 250 22 22 chr12 119995542 119995634 -23790821 - MIR SINE MIR -12 250 159 1045 282 13 0 chr12 119995655 119995889 -23790566 + MIR SINE MIR 13 249 -13 213 270 140 20 chr12 119995894 119995994 -23790461 - MIR SINE MIR -119 143 32 447 268 80 9 chr12 119996015 119996127 -23790328 - MIR SINE MIR -56 152 33 207 204 0 0 chr12 119996477 119996526 -23789929 + CT-rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr12 119996526 119996555 -23789900 + AT_rich Low_complexity Low_complexity 1 29 0 2202 121 0 3 chr12 119996655 119996968 -23789487 + AluSx SINE Alu 1 312 0 184 308 19 0 chr12 119997003 119997055 -23789400 - L2 LINE L2 -19 3253 3201 * 648 205 47 47 chr12 119997040 119997211 -23789244 - MIR SINE MIR -89 173 3 371 247 0 35 chr12 119997262 119997347 -23789108 + MIR SINE MIR 80 161 -101 1052 189 104 69 chr12 119997678 119997950 -23788505 - MER58B DNA MER1_type -2083 337 51 2181 121 16 0 chr12 119997950 119998257 -23788198 + AluSq SINE Alu 1 312 -1 1052 189 104 69 chr12 119998257 119998302 -23788153 - MER58B DNA MER1_type -2369 51 9 316 333 106 0 chr12 119998316 119998448 -23788007 - L1MC4 LINE L1 -1 8041 7896 2253 98 51 0 chr12 119998510 119998951 -23787504 + AluSx SINE Alu 2 457 0 359 292 43 43 chr12 119999280 119999441 -23787014 + L2 LINE L2 3133 3293 -20 225 0 0 0 chr12 119999441 119999466 -23786989 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2148 128 0 0 chr12 119999468 119999756 -23786699 - AluSq SINE Alu -25 288 1 236 296 15 30 chr12 119999787 119999919 -23786536 - L1MEd LINE L1 -5018 1101 972 1151 218 81 60 chr12 120000126 120000511 -23785944 - MSTD LTR MaLR -1 395 3 656 228 48 12 chr12 120002183 120002350 -23784105 + MIR SINE MIR 20 192 -70 503 246 90 0 chr12 120003227 120003361 -23783094 - MIR SINE MIR -98 164 19 198 171 0 0 chr12 120003374 120003415 -23783040 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 370 257 105 0 chr12 120003545 120003650 -23782805 - MIR SINE MIR -63 199 84 2173 142 0 3 chr12 120003653 120003964 -23782491 - AluJb SINE Alu 0 312 3 421 40 0 0 chr12 120003965 120004015 -23782440 - AluJb SINE Alu -176 136 87 353 308 115 8 chr12 120004445 120004575 -23781880 + MIR SINE MIR 92 235 -27 195 260 156 13 chr12 120004691 120004768 -23781687 + MIR SINE MIR 51 138 -70 2196 138 0 0 chr12 120005066 120005370 -23781085 + AluSx SINE Alu 1 304 -8 784 200 0 0 chr12 120005387 120005512 -23780943 + FAM SINE Alu 1 125 -60 1288 145 60 5 chr12 120005512 120005712 -23780743 + AluJo SINE Alu 85 295 -17 282 233 14 0 chr12 120006260 120006333 -23780122 + MIR SINE MIR 54 127 -81 428 217 6 127 chr12 120006652 120006774 -23779681 + MIR SINE MIR 117 215 -47 1374 199 47 36 chr12 120006774 120007075 -23779380 + AluJo SINE Alu 1 304 -8 428 217 6 127 chr12 120007075 120007118 -23779337 + MIR SINE MIR 215 262 0 348 133 0 0 chr12 120007118 120007178 -23779277 + (TTA)n Simple_repeat Simple_repeat 2 61 0 186 43 0 0 chr12 120007273 120007296 -23779159 + (CA)n Simple_repeat Simple_repeat 2 24 0 1990 148 11 0 chr12 120007296 120007580 -23778875 - AluJb SINE Alu -25 287 1 666 269 77 6 chr12 120007600 120007782 -23778673 - MIR SINE MIR -1 261 67 735 278 65 23 chr12 120007840 120008056 -23778399 + MIR SINE MIR 12 236 -26 1889 115 78 0 chr12 120008068 120008338 -23778117 - AluSx SINE Alu -21 291 1 359 253 67 48 chr12 120009059 120009376 -23777079 - L1M LINE L1 -768 5378 5072 2393 108 0 0 chr12 120009376 120009683 -23776772 + AluSx SINE Alu 2 308 -4 444 282 12 16 chr12 120009960 120010142 -23776313 + MIR3 SINE MIR 13 193 -15 900 179 0 0 chr12 120010191 120010336 -23776119 + FRAM SINE Alu 1 145 -31 23 0 0 0 chr12 120010336 120010359 -23776096 + AT_rich Low_complexity Low_complexity 1 23 0 304 164 30 45 chr12 120011472 120011539 -23774916 - MER5B DNA MER1_type -8 170 105 1480 209 99 14 chr12 120011616 120012042 -23774413 - L1ME3 LINE L1 -88 6074 5613 214 100 0 0 chr12 120012080 120012110 -23774345 + MER5B DNA MER1_type 143 172 -6 674 255 7 0 chr12 120012114 120012263 -23774192 - MIR SINE MIR -98 164 15 2259 113 0 23 chr12 120012559 120012868 -23773587 + AluSx SINE Alu 1 302 -10 236 268 0 18 chr12 120013023 120013079 -23773376 + MER91 DNA MER1_type 135 189 -1 214 277 10 79 chr12 120013079 120013135 -23773320 + MIR SINE MIR 105 153 -55 462 255 171 67 chr12 120013737 120014084 -23772371 + L2 LINE L2 2698 3107 -206 2432 94 0 0 chr12 120014084 120014391 -23772064 + AluSq SINE Alu 3 309 -4 462 255 171 67 chr12 120014391 120014537 -23771918 + L2 LINE L2 3107 3236 -77 213 250 18 18 chr12 120014541 120014597 -23771858 - L2 LINE L2 -1 3271 3216 661 276 138 50 chr12 120015640 120016062 -23770393 - L1MEd LINE L1 -3013 3116 2732 1936 108 10 61 chr12 120016062 120016358 -23770097 + AluSx SINE Alu 3 283 -29 661 276 138 50 chr12 120016358 120016689 -23769766 - L1MEd LINE L1 -3397 2732 2297 262 331 45 8 chr12 120016964 120017097 -23769358 - HAL1 LINE L1 -762 1745 1608 39453 67 4 5 chr12 120017339 120018603 -23767852 - L1PA5 LINE L1 -6 6148 4883 2306 93 0 19 chr12 120018603 120018941 -23767514 - AluY SINE Alu 0 311 1 39453 67 4 5 chr12 120018941 120023833 -23762622 - L1PA5 LINE L1 -1271 4883 2 1258 275 49 75 chr12 120023852 120024743 -23761712 - L1MEd LINE L1 -4862 1257 390 675 254 136 13 chr12 120024879 120025107 -23761348 - MIR SINE MIR -3 259 4 384 267 96 27 chr12 120025953 120026140 -23760315 + MLT1K LTR MaLR 323 522 -66 1911 172 0 3 chr12 120026147 120026438 -23760017 - AluJb SINE Alu -18 294 5 263 213 175 12 chr12 120026533 120026613 -23759842 - L2 LINE L2 0 3272 3180 398 267 92 8 chr12 120026785 120026916 -23759539 + MIR3 SINE MIR 59 200 -8 1080 233 118 5 chr12 120027854 120028228 -23758227 + LTR16A1 LTR ERVL 28 443 -14 247 253 13 27 chr12 120028310 120028385 -23758070 - MIR SINE MIR -72 190 117 1245 274 171 15 chr12 120028931 120029410 -23757045 - MLT1K LTR MaLR -9 579 26 304 248 73 18 chr12 120029541 120029630 -23756825 + MIR3 SINE MIR 74 168 -40 470 203 39 92 chr12 120029630 120029783 -23756672 + MER5B DNA MER1_type 1 145 -33 281 195 59 0 chr12 120029937 120030015 -23756440 - MIR SINE MIR -92 116 76 599 247 98 23 chr12 120030418 120030592 -23755863 + MER91B DNA MER1_type 1 187 -3 366 276 0 0 chr12 120030597 120030684 -23755771 + MIR SINE MIR 49 135 -73 289 261 98 22 chr12 120030780 120030872 -23755583 - L2 LINE L2 0 3313 3215 1734 183 0 7 chr12 120030994 120031289 -23755166 - AluJo SINE Alu -19 293 1 913 268 16 16 chr12 120031359 120031669 -23754786 + MER113 DNA MER1_type? 210 519 -2 354 191 244 26 chr12 120032077 120032192 -23754263 + MIR SINE MIR 113 252 -10 1103 144 0 31 chr12 120032696 120032859 -23753596 - MER53 DNA DNA 0 189 31 2041 116 33 7 chr12 120032859 120033160 -23753295 - AluSq SINE Alu -4 309 1 1103 144 0 31 chr12 120033160 120033191 -23753264 - MER53 DNA DNA -158 31 1 372 324 0 29 chr12 120033299 120033409 -23753046 + MER117 DNA MER1_type 33 140 -57 1185 176 44 9 chr12 120033409 120033636 -23752819 + MER46A DNA MER2_type 2 236 0 372 324 0 29 chr12 120033636 120033661 -23752794 + MER117 DNA MER1_type 140 164 -33 230 302 0 0 chr12 120033664 120033727 -23752728 + MER117 DNA MER1_type 109 171 -26 180 279 0 0 chr12 120034414 120034475 -23751980 + (TG)n Simple_repeat Simple_repeat 2 62 0 492 303 34 17 chr12 120034756 120034934 -23751521 + MER117 DNA MER1_type 2 182 -15 260 210 0 32 chr12 120035419 120035481 -23750974 - LTR33A LTR ERVL -6 517 458 281 345 49 38 chr12 120036751 120037015 -23749440 + L1M4 LINE L1 4526 4792 -1354 645 248 68 24 chr12 120037015 120037221 -23749234 + HERV16 LTR ERVL 266 480 -4516 306 0 0 0 chr12 120037225 120037259 -23749196 + (TG)n Simple_repeat Simple_repeat 2 35 0 423 119 59 40 chr12 120037263 120037364 -23749091 - L1MB7 LINE L1 0 6184 6082 1744 187 35 93 chr12 120037416 120037929 -23748526 - L1MB7 LINE L1 -89 6095 5659 2937 180 18 2 chr12 120037929 120038439 -23748016 - MLT2B1 LTR ERVL 0 520 3 1744 187 35 93 chr12 120038439 120038634 -23747821 - L1MB7 LINE L1 -525 5659 5454 2180 282 72 38 chr12 120038668 120038764 -23747691 + HERV16 LTR ERVL 501 592 -4404 2299 112 3 0 chr12 120038764 120039067 -23747388 - AluSx SINE Alu -8 304 1 2180 282 72 38 chr12 120039067 120040014 -23746441 + HERV16 LTR ERVL 592 1579 -3417 1970 146 7 4 chr12 120040237 120040517 -23745938 + AluJb SINE Alu 1 281 -31 310 154 77 0 chr12 120040525 120040629 -23745826 + (TA)n Simple_repeat Simple_repeat 2 113 0 717 238 46 68 chr12 120040630 120040803 -23745652 + L1MC4 LINE L1 7741 7905 -137 2030 137 0 32 chr12 120040803 120041116 -23745339 + AluJb SINE Alu 1 303 -9 717 238 46 68 chr12 120041116 120041249 -23745206 + L1MC4 LINE L1 7905 8040 -2 407 309 0 24 chr12 120041270 120041393 -23745062 + MIR SINE MIR 21 140 -122 2174 156 29 36 chr12 120041484 120041901 -23744554 - MLT2D LTR ERVL 0 414 1 297 205 108 0 chr12 120042210 120042293 -23744162 + MIR SINE MIR 45 136 -72 551 284 113 5 chr12 120042365 120042559 -23743896 - MIR SINE MIR -32 230 16 538 186 21 79 chr12 120043256 120043396 -23743059 + MIR SINE MIR 56 187 -75 236 309 71 12 chr12 120043871 120043955 -23742500 - MIR SINE MIR -172 90 2 1192 223 94 31 chr12 120043974 120044201 -23742254 - L1ME3A LINE L1 -11 6159 5897 440 250 65 9 chr12 120044201 120044309 -23742146 + MER81 DNA DNA 1 114 0 1192 223 94 31 chr12 120044309 120044462 -23741993 - L1ME3A LINE L1 -273 5897 5755 14355 180 38 45 chr12 120044463 120047561 -23738894 - L1MA4 LINE L1 -4 7358 4252 2129 123 3 0 chr12 120047561 120047870 -23738585 - AluSq SINE Alu -3 310 1 14355 180 38 45 chr12 120047870 120050170 -23736285 - L1MA4 LINE L1 -3110 4252 1938 865 206 6 0 chr12 120050172 120050347 -23736108 + FRAM SINE Alu 1 176 0 2565 279 96 6 chr12 120050351 120051159 -23735296 - L1MA4 LINE L1 -5276 1933 1109 281 265 24 0 chr12 120051174 120051257 -23735198 - L1ME3A LINE L1 -419 5747 5663 401 294 212 0 chr12 120051892 120052038 -23734417 - MER5A DNA MER1_type 0 189 13 2574 143 10 2 chr12 120052572 120052972 -23733483 - MER57A LTR ERV1 0 403 1 989 206 6 6 chr12 120053061 120053236 -23733219 + MER41D LTR ERV1 382 556 -1 4037 96 44 19 chr12 120053245 120053387 -23733068 - MER4B LTR ERV1 0 610 473 2617 90 34 6 chr12 120053387 120053741 -23732714 + THE1B LTR MaLR 1 364 0 4037 96 44 19 chr12 120053741 120054193 -23732262 - MER4B LTR ERV1 -137 473 1 676 267 117 51 chr12 120054212 120054473 -23731982 + L2 LINE L2 2472 2714 -558 5515 117 61 9 chr12 120054473 120055331 -23731124 - MER4D LTR ERV1 -1 902 1 676 267 117 51 chr12 120055331 120055581 -23730874 + L2 LINE L2 2714 3014 -258 1843 128 14 75 chr12 120055667 120056036 -23730419 - MER4A LTR ERV1 0 664 261 680 81 10 20 chr12 120056036 120056135 -23730320 - MER4A LTR ERV1 -566 98 1 272 339 144 0 chr12 120056160 120056278 -23730177 + L2 LINE L2 3138 3272 0 244 162 15 29 chr12 120056285 120056353 -23730102 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 1753 176 20 0 chr12 120056458 120056764 -23729691 + AluJo SINE Alu 1 312 0 261 83 0 0 chr12 120056768 120056804 -23729651 + (GGGGA)n Simple_repeat Simple_repeat 5 40 0 295 347 118 7 chr12 120057641 120057785 -23728670 + MIR SINE MIR 100 259 -3 1370 166 58 25 chr12 120057944 120058222 -23728233 + AluJo SINE Alu 1 287 -25 216 182 0 0 chr12 120058264 120058308 -23728147 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2722 136 19 0 chr12 120058329 120058740 -23727715 + LOR1b LTR ERV1 43 461 0 2058 130 0 0 chr12 120058760 120059067 -23727388 - AluSx SINE Alu -5 307 1 1465 248 49 67 chr12 120059861 120060171 -23726284 - L1ME3 LINE L1 -2 6160 5863 1807 145 7 0 chr12 120060171 120060447 -23726008 - AluJb SINE Alu -34 278 1 1465 248 49 67 chr12 120060447 120060689 -23725766 - L1ME3 LINE L1 -299 5863 5618 264 247 74 0 chr12 120060762 120060843 -23725612 - L1ME3 LINE L1 -565 5605 5519 3582 155 39 28 chr12 120060846 120061480 -23724975 - LTR39 LTR ERV1 0 783 143 892 146 6 61 chr12 120061533 120061698 -23724757 - LTR39 LTR ERV1 -627 156 1 307 229 0 0 chr12 120061698 120061759 -23724696 - L1ME3 LINE L1 -645 5519 5459 201 302 52 43 chr12 120062433 120062549 -23723906 - MIR3 SINE MIR -78 130 14 1321 226 69 62 chr12 120062841 120063305 -23723150 - MLT1C LTR MaLR 0 467 1 568 240 82 97 chr12 120064101 120064252 -23722203 - L1MC4 LINE L1 -1 8041 7889 809 116 7 51 chr12 120064252 120064390 -23722065 - FLAM_C SINE Alu -1 132 1 568 240 82 97 chr12 120064390 120064650 -23721805 - L1MC4 LINE L1 -153 7889 7636 393 188 0 0 chr12 120064820 120064905 -23721550 + (CA)n Simple_repeat Simple_repeat 1 85 0 261 192 0 0 chr12 120064906 120064958 -23721497 - MER4-int LTR ERV1 -5436 1162 1111 492 229 18 0 chr12 120064959 120065125 -23721330 + (CA)n Simple_repeat Simple_repeat 1 169 0 282 164 15 45 chr12 120065339 120065406 -23721049 - MLT1D LTR MaLR -3 502 438 1624 123 78 11 chr12 120065407 120065675 -23720780 + AluJb SINE Alu 1 286 -26 398 295 42 0 chr12 120065688 120065783 -23720672 - L1MC4 LINE L1 -1330 6712 6614 375 311 0 0 chr12 120065703 120065793 -23720662 + L1MC4 LINE L1 6614 6703 -1339 * 360 322 0 0 chr12 120065789 120065879 -23720576 + L1MC4 LINE L1 6614 6703 -1339 * 388 273 23 0 chr12 120065803 120065891 -23720564 - L1MC4 LINE L1 -1339 6703 6614 497 201 6 46 chr12 120065891 120066094 -23720361 - MLT1D LTR MaLR -174 331 159 1621 154 0 31 chr12 120066095 120066388 -23720067 + AluJo SINE Alu 7 290 -22 878 150 7 7 chr12 120066401 120066548 -23719907 + L1PA16 LINE L1 6015 6161 -5 25 31 0 0 chr12 120066550 120066582 -23719873 + AT_rich Low_complexity Low_complexity 1 32 0 346 225 62 0 chr12 120066588 120066668 -23719787 - MLT1D LTR MaLR -328 177 93 * 656 213 7 15 chr12 120066667 120066803 -23719652 + MLT1C LTR MaLR 333 467 0 674 250 108 39 chr12 120067676 120067936 -23718519 - MLT1C LTR MaLR -184 283 6 198 103 0 0 chr12 120068711 120068740 -23717715 + (GGA)n Simple_repeat Simple_repeat 1 29 0 375 151 27 27 chr12 120068762 120068835 -23717620 + MER58 DNA MER1_type 2345 2417 -3 916 107 23 73 chr12 120069750 120069893 -23716562 + AluSg/x SINE Alu 138 287 -25 210 37 0 0 chr12 120069893 120069920 -23716535 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 916 107 23 73 chr12 120069920 120069931 -23716524 + AluSg/x SINE Alu 287 285 -27 1731 124 45 51 chr12 120069931 120070048 -23716407 + AluJo SINE Alu 1 117 -195 281 26 26 0 chr12 120070048 120070086 -23716369 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1731 124 45 51 chr12 120070086 120070282 -23716173 + AluJo SINE Alu 117 312 0 916 107 23 73 chr12 120070282 120070303 -23716152 + AluSg/x SINE Alu 284 305 -7 594 243 156 0 chr12 120070352 120070525 -23715930 + MER3 DNA MER1_type 1 200 -9 278 146 0 0 chr12 120071430 120071471 -23714984 - MER20 DNA MER1_type -70 149 109 267 284 79 42 chr12 120071661 120071832 -23714623 + MIR SINE MIR 80 262 0 2081 107 0 7 chr12 120072973 120073273 -23713182 - AluSx SINE Alu -14 298 1 626 134 62 9 chr12 120073782 120073894 -23712561 - MER20 DNA MER1_type -70 149 32 846 188 100 6 chr12 120074295 120074465 -23711990 - MER20 DNA MER1_type 0 219 34 331 290 43 58 chr12 120075536 120075692 -23710763 + MER21B LTR ERV1 1 197 -408 * 1710 246 59 64 chr12 120075665 120076310 -23710145 + MER21B LTR ERV1 98 739 -124 25 65 0 0 chr12 120076425 120076471 -23709984 + AT_rich Low_complexity Low_complexity 1 46 0 2016 137 3 3 chr12 120076667 120076980 -23709475 + AluSq SINE Alu 1 313 0 504 950 553 0 chr12 120077193 120077415 -23709040 + L1MC5 LINE L1 6971 6481 -1511 3469 103 9 64 chr12 120077415 120077790 -23708665 - LTR26B LTR ERV1 0 531 137 222 62 0 0 chr12 120077790 120077822 -23708633 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1755 148 0 4 chr12 120077828 120078105 -23708350 - AluJb SINE Alu -36 276 1 3469 103 9 64 chr12 120078105 120078284 -23708171 - LTR26B LTR ERV1 -399 132 1 504 950 553 0 chr12 120078284 120078363 -23708092 + L1MC5 LINE L1 6480 7255 -737 1691 174 3 7 chr12 120078407 120078717 -23707738 - AluJb SINE Alu -1 311 3 1881 109 7 18 chr12 120080548 120080831 -23705624 + AluSx SINE Alu 6 285 -27 256 158 0 0 chr12 120080977 120081015 -23705440 + MLT1E2 LTR MaLR 9 46 -459 * 320 89 0 0 chr12 120081013 120081058 -23705397 - MADE1 DNA Mariner -34 46 2 1176 249 74 3 chr12 120081058 120081383 -23705072 + MLT1E2 LTR MaLR 158 505 -121 1286 173 126 15 chr12 120081385 120081656 -23704799 - MLT1D LTR MaLR -204 301 1 1900 127 70 59 chr12 120081661 120081874 -23704581 - THE1C LTR MaLR 0 375 155 2283 89 13 0 chr12 120081874 120082176 -23704279 + AluSc SINE Alu 1 306 -3 1900 127 70 59 chr12 120082176 120082333 -23704122 - THE1C LTR MaLR -220 155 1 309 221 26 0 chr12 120082338 120082415 -23704040 - L2 LINE L2 -1085 2229 2151 804 204 18 0 chr12 120082421 120082588 -23703867 + FRAM SINE Alu 1 170 -6 949 60 0 87 chr12 120082831 120082980 -23703475 + AluSq/x SINE Alu 1 136 -177 1908 114 3 46 chr12 120082981 120083305 -23703150 + AluSx SINE Alu 3 312 0 219 305 105 38 chr12 120083693 120083798 -23702657 - MIR SINE MIR -115 147 36 706 113 0 35 chr12 120083798 120083913 -23702542 - MLT1D LTR MaLR -8 497 387 549 220 79 75 chr12 120083974 120084188 -23702267 - MLT1D LTR MaLR -121 384 170 1198 258 32 24 chr12 120084188 120084223 -23702232 + L1ME3 LINE L1 5634 5667 -495 2370 144 48 22 chr12 120084223 120084640 -23701815 + MSTA LTR MaLR 1 428 0 1198 258 32 24 chr12 120084640 120084980 -23701475 + L1ME3 LINE L1 5667 6012 -150 331 281 49 79 chr12 120085085 120085249 -23701206 - L1M LINE L1 -2386 5422 5264 1972 120 3 13 chr12 120085584 120085885 -23700570 - AluSx SINE Alu -14 298 1 210 328 120 8 chr12 120086021 120086146 -23700309 + L2 LINE L2 2941 3079 -193 2766 131 24 5 chr12 120086399 120086819 -23699636 - MSTA LTR MaLR 0 428 1 2490 157 66 9 chr12 120086881 120087127 -23699328 + LTR47A LTR ERVL 1 283 -169 2882 210 12 68 chr12 120087127 120087687 -23698768 + LTR8 LTR ERV1 1 512 -179 2281 79 0 23 chr12 120087687 120087991 -23698464 - AluSg SINE Alu -13 297 1 2882 210 12 68 chr12 120087991 120088162 -23698293 + LTR8 LTR ERV1 512 691 0 2490 157 66 9 chr12 120088162 120088342 -23698113 + LTR47A LTR ERVL 283 451 -1 180 229 0 0 chr12 120088694 120088729 -23697726 - MIR SINE MIR -65 197 163 886 170 48 0 chr12 120088781 120088946 -23697509 + MER3 DNA MER1_type 1 126 -83 573 216 50 110 chr12 120088956 120089034 -23697421 + MIR SINE MIR 57 138 -124 1800 105 15 197 chr12 120089034 120089098 -23697357 + MLT1B LTR MaLR 1 75 -315 1930 113 42 0 chr12 120089098 120089382 -23697073 - AluSx SINE Alu -16 296 1 1800 105 15 197 chr12 120089382 120089794 -23696661 + MLT1B LTR MaLR 75 390 0 573 216 50 110 chr12 120089794 120089817 -23696638 + MIR SINE MIR 138 161 -101 1758 143 23 33 chr12 120089817 120090117 -23696338 + AluJo SINE Alu 1 297 -15 573 216 50 110 chr12 120090117 120090232 -23696223 + MIR SINE MIR 161 261 -1 358 285 60 14 chr12 120090213 120090362 -23696093 - MIR SINE MIR -69 139 6 * 2945 159 30 0 chr12 120090648 120091120 -23695335 - MER66B LTR ERV1 0 486 1 1963 154 0 0 chr12 120091377 120091688 -23694767 - AluSx SINE Alu -1 311 1 1481 110 8 8 chr12 120091962 120092082 -23694373 - L1MA8 LINE L1 -3 6288 6169 2066 143 137 8 chr12 120092082 120092461 -23693994 + MSTA LTR MaLR 1 428 0 1481 110 8 8 chr12 120092461 120092585 -23693870 - L1MA8 LINE L1 -121 6170 6044 249 306 0 14 chr12 120092586 120092658 -23693797 + MIR3 SINE MIR 117 187 -21 1642 194 0 0 chr12 120093105 120093398 -23693057 + AluJo SINE Alu 1 293 -19 1969 132 7 3 chr12 120094060 120094356 -23692099 - AluSx SINE Alu -13 299 3 251 241 35 0 chr12 120094357 120094415 -23692040 - MIR3 SINE MIR -51 157 98 503 155 48 0 chr12 120094415 120094499 -23691956 - AluS SINE Alu -224 89 2 1699 139 0 8 chr12 120094517 120094776 -23691679 - AluSx SINE Alu -55 257 1 483 240 62 41 chr12 120094778 120094924 -23691531 - MIR3 SINE MIR -54 154 6 235 253 0 69 chr12 120095353 120095440 -23691015 + CT-rich Low_complexity Low_complexity 6 86 0 1745 204 68 108 chr12 120095918 120096633 -23689822 + L1MB4 LINE L1 4497 5183 -963 3268 136 0 16 chr12 120096638 120097065 -23689390 + MER66B LTR ERV1 3 422 -64 2599 78 8 60 chr12 120097065 120097249 -23689206 + THE1B LTR MaLR 1 156 -208 2132 104 3 0 chr12 120097249 120097547 -23688908 + AluSx SINE Alu 1 299 -13 2599 78 8 60 chr12 120097547 120097746 -23688709 + THE1B LTR MaLR 156 364 0 3268 136 0 16 chr12 120097746 120097810 -23688645 + MER66B LTR ERV1 422 486 0 4025 179 45 23 chr12 120097821 120098091 -23688364 + L1MB4 LINE L1 5196 5459 -721 2074 134 0 0 chr12 120098091 120098389 -23688066 - AluSx SINE Alu -14 298 1 4025 179 45 23 chr12 120098389 120098800 -23687655 + L1MB4 LINE L1 5459 5906 -274 1570 169 0 46 chr12 120098800 120099107 -23687348 + AluJb SINE Alu 1 293 -19 4025 179 45 23 chr12 120099107 120099388 -23687067 + L1MB4 LINE L1 5906 6179 -1 1938 137 3 34 chr12 120099504 120099826 -23686629 + AluJb SINE Alu 1 312 0 293 239 168 53 chr12 120099936 120100049 -23686406 + FLAM_C SINE Alu 8 133 0 561 188 97 85 chr12 120100318 120100404 -23686051 - MER45A DNA AcHobo -1403 178 94 1695 162 0 3 chr12 120100404 120100715 -23685740 + AluJo SINE Alu 1 310 0 561 188 97 85 chr12 120100715 120100803 -23685652 - MER45A DNA AcHobo -1487 94 1 233 316 108 28 chr12 120101031 120101243 -23685212 + MLT1L LTR MaLR 212 440 -175 2136 92 26 20 chr12 120101455 120101760 -23684695 - AluSx SINE Alu -5 307 1 373 227 197 0 chr12 120101910 120102042 -23684413 - MIR SINE MIR -20 242 85 445 301 71 44 chr12 120102487 120102713 -23683742 - MIR SINE MIR -13 249 18 1951 145 6 13 chr12 120102832 120103318 -23683137 + AluSx SINE Alu 1 312 0 488 16 16 0 chr12 120103335 120103396 -23683059 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 1764 180 11 72 chr12 120103550 120103923 -23682532 - MLT1A1 LTR MaLR -15 350 1 2103 118 0 0 chr12 120104028 120104324 -23682131 + AluSx SINE Alu 3 298 -14 484 180 93 50 chr12 120104324 120104477 -23681978 - Charlie4a DNA MER1_type -1665 296 134 353 257 21 29 chr12 120104671 120104811 -23681644 + L1MDa LINE L1 2443 2581 -3959 192 323 0 15 chr12 120105123 120105188 -23681267 + MIR SINE MIR 4 67 -195 230 288 0 0 chr12 120105200 120105259 -23681196 - L2 LINE L2 0 3313 3255 466 249 30 73 chr12 120105259 120105296 -23681159 + MIR SINE MIR 97 134 -128 1302 185 120 135 chr12 120105296 120105634 -23680821 - MLT1H LTR MaLR 0 549 221 2461 80 0 0 chr12 120105634 120105945 -23680510 + AluY SINE Alu 1 311 0 1302 185 120 135 chr12 120105945 120106163 -23680292 - MLT1H LTR MaLR -328 221 1 466 249 30 73 chr12 120106163 120106290 -23680165 + MIR SINE MIR 134 254 -8 1309 293 86 24 chr12 120107596 120108087 -23678368 - MLT1K LTR MaLR -58 530 10 1336 258 76 9 chr12 120108103 120108538 -23677917 - LTR16B LTR ERVL 0 464 1 247 262 110 35 chr12 120108609 120108720 -23677735 - MIR3 SINE MIR -44 164 46 1522 191 42 37 chr12 120108757 120109112 -23677343 + MLT1C LTR MaLR 7 363 -104 945 199 11 0 chr12 120109249 120109435 -23677020 - L1PB4 LINE L1 -9 6147 5960 300 320 47 23 chr12 120109637 120109765 -23676690 - MIR SINE MIR -6 256 126 1927 100 3 21 chr12 120109914 120110269 -23676186 + AluSx SINE Alu 1 350 0 309 89 0 0 chr12 120110715 120110760 -23675695 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 208 288 213 12 chr12 120110760 120110840 -23675615 - L2 LINE L2 -14 3299 3204 395 308 173 22 chr12 120111196 120111381 -23675074 + MIR SINE MIR 2 214 -48 210 282 0 42 chr12 120111437 120111508 -23674947 - L2 LINE L2 -183 3089 3022 294 330 119 0 chr12 120111508 120111617 -23674838 + L2 LINE L2 3151 3272 0 753 271 63 34 chr12 120111799 120112068 -23674387 - L1ME LINE L1 -311 5810 5534 765 236 57 7 chr12 120112626 120112842 -23673613 - MIR SINE MIR 0 262 32 204 400 73 0 chr12 120113629 120113739 -23672716 - L2 LINE L2 -18 3295 3178 2300 82 3 3 chr12 120113982 120114286 -23672169 + AluSp SINE Alu 1 304 -9 1006 254 30 4 chr12 120114630 120114862 -23671593 - MIR SINE MIR -24 238 1 304 283 40 10 chr12 120115080 120115179 -23671276 - MIR SINE MIR -63 145 44 2332 157 45 66 chr12 120115827 120116343 -23670112 - MLT1D LTR MaLR 0 505 1 529 245 83 60 chr12 120116392 120116608 -23669847 + MIR SINE MIR 20 240 -22 333 321 161 12 chr12 120116653 120116815 -23669640 + MIR SINE MIR 6 191 -71 21 0 0 0 chr12 120117288 120117309 -23669146 + AT_rich Low_complexity Low_complexity 1 21 0 601 266 87 19 chr12 120117480 120117687 -23668768 + MIR SINE MIR 19 239 -23 199 299 126 58 chr12 120117801 120117888 -23668567 + MIR SINE MIR 30 122 -86 1878 143 3 0 chr12 120117918 120118211 -23668244 + AluSx SINE Alu 1 294 -18 202 255 0 0 chr12 120118217 120118264 -23668191 - L2 LINE L2 -18 3295 3249 * 461 320 9 13 chr12 120118253 120118414 -23668041 + MIR3 SINE MIR 13 175 -52 739 289 37 5 chr12 120118490 120118708 -23667747 + MIR SINE MIR 22 246 -16 349 229 0 28 chr12 120118713 120118857 -23667598 + (CACCAT)n Simple_repeat Simple_repeat 1 140 0 1117 195 4 33 chr12 120118857 120119098 -23667357 + AluJo SINE Alu 47 280 -32 2167 107 0 3 chr12 120119098 120119398 -23667057 - AluSq SINE Alu -13 300 2 255 123 41 14 chr12 120120894 120120967 -23665488 - HERVFH21 LTR ERV1 -6435 94 20 40 0 0 0 chr12 120122960 120123000 -23663455 + AT_rich Low_complexity Low_complexity 1 40 0 434 203 264 7 chr12 120123205 120123353 -23663102 + MIR3 SINE MIR 20 205 -3 312 208 196 0 chr12 120123744 120123835 -23662620 - MIR3 SINE MIR -48 160 49 424 282 0 9 chr12 120124579 120124689 -23661766 + MIR SINE MIR 23 131 -131 588 307 179 0 chr12 120124706 120124918 -23661537 + MIR SINE MIR 3 252 -10 232 279 110 16 chr12 120125019 120125180 -23661275 + MIR SINE MIR 2 182 -63 201 308 115 94 chr12 120125285 120125519 -23660936 + L2 LINE L2 3034 3272 0 338 283 54 0 chr12 120125716 120125808 -23660647 - L2 LINE L2 0 3272 3176 1862 144 25 0 chr12 120125809 120126093 -23660362 + AluSx SINE Alu 1 291 -21 1795 120 24 14 chr12 120126738 120127030 -23659425 - AluJo SINE Alu -17 295 1 186 189 0 0 chr12 120127425 120127462 -23658993 + T-rich Low_complexity Low_complexity 4 40 0 238 254 8 71 chr12 120127686 120127831 -23658624 + (TCTCTG)n Simple_repeat Simple_repeat 1 135 0 225 195 23 35 chr12 120127858 120127945 -23658510 + CT-rich Low_complexity Low_complexity 1 86 0 403 214 16 111 chr12 120128065 120128145 -23658310 + MER81 DNA DNA 1 66 -48 1672 173 3 10 chr12 120128145 120128457 -23657998 + AluJo SINE Alu 1 310 -2 403 214 16 111 chr12 120128457 120128502 -23657953 + MER81 DNA DNA 66 114 0 847 185 130 0 chr12 120128833 120128995 -23657460 - MER5A DNA MER1_type -6 183 1 361 302 129 47 chr12 120129041 120129799 -23656656 - L2 LINE L2 -47 3266 2453 390 290 55 49 chr12 120130824 120131067 -23655388 - L1MB8 LINE L1 -166 6008 5758 747 236 22 17 chr12 120131294 120131472 -23654983 + MIR SINE MIR 21 199 -63 238 193 26 18 chr12 120131577 120131691 -23654764 + (TG)n Simple_repeat Simple_repeat 2 116 0 234 0 0 0 chr12 120132528 120132554 -23653901 + (TTA)n Simple_repeat Simple_repeat 1 26 0 43 20 0 0 chr12 120132666 120132716 -23653739 + AT_rich Low_complexity Low_complexity 1 50 0 1071 225 62 4 chr12 120132819 120133063 -23653392 + MIR SINE MIR 2 259 -3 277 325 24 41 chr12 120133114 120133237 -23653218 - MIR SINE MIR -82 180 60 587 279 30 60 chr12 120133628 120133829 -23652626 + MIR SINE MIR 5 199 -63 180 0 0 0 chr12 120134074 120134094 -23652361 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr12 120134132 120134158 -23652297 + AT_rich Low_complexity Low_complexity 1 26 0 371 306 28 14 chr12 120134322 120134466 -23651989 - MER5A DNA MER1_type -1 188 43 267 308 103 6 chr12 120134532 120134688 -23651767 - L3 LINE CR1 -116 1461 1291 2045 117 21 0 chr12 120135406 120135697 -23650758 + AluSx SINE Alu 13 309 -3 562 302 176 20 chr12 120135769 120136264 -23650191 - L2 LINE L2 -36 3236 2678 794 294 43 5 chr12 120136521 120136732 -23649723 + MIR SINE MIR 44 262 0 758 268 45 56 chr12 120136814 120137101 -23649354 + L2 LINE L2 3029 3312 -1 807 232 21 37 chr12 120137721 120137911 -23648544 + MER5A DNA MER1_type 3 189 0 486 299 30 30 chr12 120137940 120138104 -23648351 - MER5B DNA MER1_type -2 176 13 630 309 27 9 chr12 120138592 120138812 -23647643 - MIR SINE MIR 0 262 39 251 162 44 15 chr12 120139921 120139989 -23646466 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 192 152 0 0 chr12 120139995 120140028 -23646427 + (TG)n Simple_repeat Simple_repeat 2 34 0 1020 208 42 14 chr12 120140052 120140264 -23646191 + MER82 DNA MER2_type 2 219 -434 2188 203 35 55 chr12 120140267 120140809 -23645646 + MER82 DNA MER2_type 122 652 -1 1315 284 67 41 chr12 120140826 120141364 -23645091 - MLT1K LTR MaLR 0 588 37 273 119 0 0 chr12 120141711 120141753 -23644702 + (TC)n Simple_repeat Simple_repeat 1 42 0 218 328 0 0 chr12 120141896 120141957 -23644498 + MIR SINE MIR 189 249 -13 992 243 5 18 chr12 120142024 120142242 -23644213 - MIR SINE MIR -28 234 20 473 281 75 12 chr12 120142758 120142918 -23643537 - MIR SINE MIR -80 182 13 195 114 0 0 chr12 120142974 120143009 -23643446 + (TG)n Simple_repeat Simple_repeat 2 36 0 193 241 18 0 chr12 120143078 120143190 -23643265 + (TG)n Simple_repeat Simple_repeat 2 115 0 625 326 11 5 chr12 120143423 120143610 -23642845 - L3 LINE CR1 -74 1503 1316 483 304 84 16 chr12 120143641 120143832 -23642623 + MIR SINE MIR 7 210 -52 414 316 17 0 chr12 120143908 120144025 -23642430 + MIR SINE MIR 2 120 -142 998 157 58 5 chr12 120144107 120144298 -23642157 - LTR33 LTR ERVL -318 203 3 329 215 13 0 chr12 120144312 120144391 -23642064 + MER116 DNA Mariner 1 80 0 214 196 206 56 chr12 120144399 120144506 -23641949 + MIR SINE MIR 23 145 -63 489 346 11 21 chr12 120145197 120145385 -23641070 + MIR SINE MIR 53 238 -24 401 282 226 21 chr12 120145386 120145673 -23640782 - MLT1I LTR MaLR -5 404 59 188 143 24 0 chr12 120145735 120145777 -23640678 + (TTA)n Simple_repeat Simple_repeat 2 44 0 726 277 84 5 chr12 120145942 120146155 -23640300 - MIR SINE MIR -32 230 1 2242 67 44 0 chr12 120147072 120147370 -23639085 + AluY SINE Alu 1 311 0 1442 283 107 27 chr12 120147382 120147866 -23638589 - MLT1K LTR MaLR -64 524 2 247 231 0 0 chr12 120148013 120148065 -23638390 - MIR SINE MIR -55 207 156 345 293 0 38 chr12 120148065 120148162 -23638293 - L1MC4 LINE L1 -1333 6709 6615 1903 127 3 7 chr12 120148162 120148445 -23638010 - AluSx SINE Alu -27 285 4 202 283 264 9 chr12 120148453 120148559 -23637896 - MIR SINE MIR -101 161 29 1503 207 102 66 chr12 120148589 120149116 -23637339 - MLT1H LTR MaLR -3 546 1 246 223 87 87 chr12 120149333 120149433 -23637022 - MIR SINE MIR -1 261 162 657 298 48 9 chr12 120149433 120149661 -23636794 + MIR SINE MIR 2 238 -24 452 207 55 69 chr12 120149671 120149816 -23636639 - MIR SINE MIR -95 167 25 1705 242 55 35 chr12 120150354 120150930 -23635525 + L2 LINE L2 2701 3303 -10 276 297 40 47 chr12 120150931 120151079 -23635376 - Charlie8 DNA MER1_type -2251 166 20 554 214 103 7 chr12 120151759 120151904 -23634551 + MIR SINE MIR 88 246 -16 786 274 107 13 chr12 120152293 120152527 -23633928 + MIR SINE MIR 6 261 -1 1481 243 35 42 chr12 120153066 120153518 -23632937 - LTR16A1 LTR ERVL -6 451 3 900 249 85 105 chr12 120154682 120154935 -23631520 - L2 LINE L2 -1 3312 3055 180 0 0 0 chr12 120154935 120154955 -23631500 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 900 249 85 105 chr12 120154955 120154984 -23631471 - L2 LINE L2 -258 3055 3027 1043 124 0 12 chr12 120154984 120155145 -23631310 - L1PA10 LINE L1 -11 6157 5999 900 249 85 105 chr12 120155145 120155482 -23630973 - L2 LINE L2 -286 3027 2702 2050 219 34 59 chr12 120155501 120156098 -23630357 - L1ME3 LINE L1 -30 6132 5551 2126 178 64 5 chr12 120156101 120156540 -23629915 - L1MB7 LINE L1 -12 6172 5708 647 283 4 78 chr12 120156542 120156742 -23629713 - L2 LINE L2 -649 2665 2483 1583 78 5 0 chr12 120156742 120156948 -23629507 + L1PA7 LINE L1 5945 6151 -3 647 283 4 78 chr12 120156948 120156977 -23629478 - L2 LINE L2 -831 2483 2453 353 338 56 12 chr12 120157090 120157250 -23629205 + MIR3 SINE MIR 14 180 -28 576 252 52 19 chr12 120157651 120157806 -23628649 + MIR3 SINE MIR 1 160 -48 716 279 88 20 chr12 120157806 120158100 -23628355 + MER102a DNA MER1_type 1 314 -16 240 173 39 19 chr12 120158130 120158182 -23628273 + L3 LINE CR1 1524 1576 -1 1921 145 10 3 chr12 120158309 120158613 -23627842 - AluJo SINE Alu -6 306 1 1020 224 100 26 chr12 120158653 120159072 -23627383 + MER113 DNA MER1_type? 1 450 -71 1054 271 130 38 chr12 120159074 120160004 -23626451 - L1MEd LINE L1 -2993 3433 2418 1039 213 33 14 chr12 120160004 120160215 -23626240 - MER58A DNA MER1_type -6 218 4 302 257 59 59 chr12 120160230 120160366 -23626089 - L1MEd LINE L1 -4038 2388 2253 470 220 72 129 chr12 120160803 120161488 -23624967 - L1MEd LINE L1 -948 1839 1083 522 213 14 97 chr12 120161489 120161601 -23624854 - MER63 DNA MER1_type 0 1062 973 1644 177 0 3 chr12 120161601 120161884 -23624571 + AluJo SINE Alu 1 282 -30 522 213 14 97 chr12 120161884 120161978 -23624477 - MER63 DNA MER1_type -89 973 873 865 106 0 0 chr12 120161979 120162102 -23624353 - AluSx SINE Alu -13 297 175 912 87 0 0 chr12 120162102 120162217 -23624238 - AluSx SINE Alu -198 115 1 681 187 86 0 chr12 120162217 120162356 -23624099 - MER63 DNA MER1_type -181 879 729 371 85 0 0 chr12 120162366 120162413 -23624042 - MER63 DNA MER1_type -883 47 1 265 296 28 0 chr12 120162496 120162567 -23623888 - L1MEd LINE L1 -5451 965 893 1322 226 14 7 chr12 120162772 120163059 -23623396 - AluJo SINE Alu -13 299 11 2500 243 63 32 chr12 120163074 120164001 -23622454 - L1ME2 LINE L1 -77 6070 5112 318 225 78 70 chr12 120164017 120164146 -23622309 - L1ME2 LINE L1 -5970 149 20 21 0 0 0 chr12 120164394 120164415 -23622040 + AT_rich Low_complexity Low_complexity 1 21 0 205 167 0 0 chr12 120165013 120165049 -23621406 - MIR SINE MIR -77 131 96 29 0 0 0 chr12 120165713 120165742 -23620713 + AT_rich Low_complexity Low_complexity 1 29 0 274 336 8 37 chr12 120166217 120166351 -23620104 + MIR SINE MIR 63 192 -70 271 363 20 14 chr12 120166520 120166666 -23619789 + MIR3 SINE MIR 55 201 -7 425 103 15 0 chr12 120166893 120166961 -23619494 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 679 322 61 57 chr12 120166961 120167368 -23619087 - L2 LINE L2 -1 3271 2863 216 191 0 24 chr12 120167602 120167644 -23618811 + GA-rich Low_complexity Low_complexity 5 45 0 199 343 96 28 chr12 120168001 120168179 -23618276 + MIR3 SINE MIR 16 205 -3 1120 271 188 30 chr12 120168379 120168747 -23617708 - MLT1H LTR MaLR 0 549 90 1944 148 0 3 chr12 120168747 120169052 -23617403 + AluSx SINE Alu 1 304 -8 1120 271 188 30 chr12 120169052 120169151 -23617304 - MLT1H LTR MaLR -459 90 8 24 0 0 0 chr12 120169168 120169192 -23617263 + AT_rich Low_complexity Low_complexity 1 24 0 1594 141 3 23 chr12 120169224 120169529 -23616926 - L1MA4 LINE L1 -2 6298 6000 484 295 16 0 chr12 120169529 120169651 -23616804 + MER5A DNA MER1_type 60 183 -6 739 186 40 0 chr12 120170107 120170231 -23616224 + FLAM_A SINE Alu 5 133 0 463 291 171 0 chr12 120170427 120170602 -23615853 + MIR SINE MIR 2 206 -56 360 316 140 7 chr12 120170600 120170736 -23615719 - MIR SINE MIR -89 173 20 * 273 135 0 0 chr12 120170922 120170974 -23615481 + (TC)n Simple_repeat Simple_repeat 1 52 0 588 321 31 9 chr12 120171346 120171570 -23614885 - MIR SINE MIR -14 248 20 462 291 44 13 chr12 120171841 120171999 -23614456 - MIR SINE MIR -44 218 56 261 288 131 26 chr12 120172972 120173125 -23613330 + L3 LINE CR1 1322 1490 -87 2265 221 48 33 chr12 120173130 120173710 -23612745 + MLT1E LTR MaLR 5 593 0 2240 185 114 22 chr12 120173768 120174260 -23612195 - MLT1F LTR MaLR -5 537 1 501 211 5 174 chr12 120174408 120174598 -23611857 - MER69 DNA AcHobo -17 2509 3 747 260 107 35 chr12 120174718 120175183 -23611272 - L2 LINE L2 -6 3307 2772 587 180 27 0 chr12 120175183 120175294 -23611161 - L1MB5 LINE L1 0 6174 6061 747 260 107 35 chr12 120175294 120175347 -23611108 - L2 LINE L2 -541 2772 2724 699 269 6 0 chr12 120175933 120176093 -23610362 + MIR SINE MIR 40 200 -62 285 264 16 72 chr12 120176263 120176388 -23610067 - Charlie8 DNA MER1_type -2269 148 31 221 337 166 6 chr12 120176523 120176692 -23609763 - MIR SINE MIR -15 247 52 630 304 32 27 chr12 120177464 120177684 -23608771 + MIR SINE MIR 34 254 -8 369 62 0 0 chr12 120178450 120178498 -23607957 + (TG)n Simple_repeat Simple_repeat 2 49 0 636 208 73 47 chr12 120178587 120178779 -23607676 + L2 LINE L2 3117 3313 0 886 266 62 4 chr12 120179114 120179355 -23607100 + MIR SINE MIR 8 262 0 579 218 14 35 chr12 120180167 120180309 -23606146 - MIR SINE MIR -40 222 84 952 262 60 54 chr12 120180963 120181446 -23605009 - MLT1H1 LTR MaLR 0 555 18 1926 140 10 0 chr12 120182588 120182880 -23603575 + AluSx SINE Alu 1 295 -17 264 200 32 116 chr12 120183003 120183098 -23603357 + MIR3 SINE MIR 97 183 -25 1115 167 32 19 chr12 120183098 120183314 -23603141 - MER20 DNA MER1_type 0 219 1 1046 227 27 35 chr12 120183401 120183661 -23602794 - MIR SINE MIR 0 262 5 562 281 113 30 chr12 120183665 120183868 -23602587 - MIR SINE MIR -6 256 37 704 282 34 14 chr12 120184178 120184387 -23602068 + MIR SINE MIR 31 243 -19 257 171 0 14 chr12 120184930 120185000 -23601455 + GA-rich Low_complexity Low_complexity 1 69 0 273 57 0 0 chr12 120185520 120185555 -23600900 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 254 0 18 chr12 120185587 120185642 -23600813 + (TG)n Simple_repeat Simple_repeat 2 55 0 816 293 61 12 chr12 120185800 120186046 -23600409 - MIR SINE MIR 0 262 5 186 71 0 0 chr12 120186088 120186116 -23600339 + (TG)n Simple_repeat Simple_repeat 2 29 0 2106 179 117 9 chr12 120186320 120186773 -23599682 + MLT1D LTR MaLR 2 503 -2 1800 159 19 13 chr12 120187028 120187336 -23599119 + AluJo SINE Alu 1 310 -2 233 285 126 26 chr12 120187429 120187580 -23598875 + L2 LINE L2 2796 2961 -353 523 264 104 22 chr12 120187607 120187789 -23598666 + L2 LINE L2 3117 3313 0 481 203 71 93 chr12 120188411 120188593 -23597862 - L1ME4a LINE L1 0 6121 5944 242 247 82 52 chr12 120188745 120188842 -23597613 + MER5A DNA MER1_type 4 103 -86 253 245 0 19 chr12 120190247 120190300 -23596155 - MIR3 SINE MIR -52 156 105 757 278 26 10 chr12 120190574 120190768 -23595687 + MIR SINE MIR 2 198 -64 2401 76 0 0 chr12 120190773 120191076 -23595379 + AluY SINE Alu 1 303 -8 735 204 0 29 chr12 120191092 120191229 -23595226 + AluJo SINE Alu 14 146 -166 920 218 20 15 chr12 120191250 120191452 -23595003 + AluJo SINE Alu 86 288 -24 238 218 64 39 chr12 120191471 120191549 -23594906 + MIR SINE MIR 183 262 0 416 247 167 37 chr12 120192158 120192320 -23594135 + MER5A DNA MER1_type 1 183 -6 1999 127 3 7 chr12 120192359 120192658 -23593797 - AluSx SINE Alu -12 300 3 659 254 138 5 chr12 120192661 120192850 -23593605 + MIR SINE MIR 49 262 0 397 306 16 0 chr12 120192920 120193041 -23593414 - L2 LINE L2 0 3272 3150 2141 97 7 3 chr12 120193212 120193510 -23592945 + AluSc SINE Alu 1 299 -10 203 274 147 32 chr12 120193665 120193760 -23592695 + MER5A DNA MER1_type 1 106 -83 258 200 0 0 chr12 120193861 120193906 -23592549 - MER5A DNA MER1_type -77 112 68 * 363 286 46 81 chr12 120193887 120194257 -23592198 - L2 LINE L2 -788 2526 2170 735 240 93 103 chr12 120196493 120197018 -23589437 - LTR33 LTR ERVL -1 520 1 180 341 0 47 chr12 120197125 120197210 -23589245 + MIR SINE MIR 22 102 -106 239 234 0 0 chr12 120198375 120198422 -23588033 + L2 LINE L2 3211 3257 -15 213 313 16 0 chr12 120199157 120199221 -23587234 - L2 LINE L2 0 3313 3249 188 279 0 0 chr12 120199918 120199961 -23586494 - L2 LINE L2 -10 3303 3261 * 645 307 0 34 chr12 120199927 120200165 -23586290 - MIR SINE MIR -13 249 20 2196 163 15 10 chr12 120200216 120200581 -23585874 - L1MB3 LINE L1 -1 6182 5813 844 88 96 0 chr12 120200581 120200706 -23585749 + MER85 DNA T2_type 1 137 -2 2196 163 15 10 chr12 120200706 120200739 -23585716 - L1MB3 LINE L1 -370 5813 5782 315 135 21 83 chr12 120200744 120200936 -23585519 + (TA)n Simple_repeat Simple_repeat 1 180 0 2565 189 21 16 chr12 120200959 120201770 -23584685 - L1MB3 LINE L1 -392 5788 4974 512 303 66 8 chr12 120202189 120202433 -23584022 - MIR SINE MIR 0 262 5 285 279 203 0 chr12 120202703 120202861 -23583594 + MIR SINE MIR 73 262 0 317 252 163 49 chr12 120202885 120203008 -23583447 + L2 LINE L2 3136 3272 0 756 258 67 9 chr12 120203317 120203542 -23582913 + MIR SINE MIR 24 261 -1 222 317 152 0 chr12 120203513 120203658 -23582797 - MIR SINE MIR -49 213 47 * 556 247 49 0 chr12 120203716 120203878 -23582577 - MIR SINE MIR -12 250 81 1002 222 8 21 chr12 120204981 120205215 -23581240 + MIR SINE MIR 32 262 0 657 190 113 31 chr12 120205277 120205472 -23580983 - MIR SINE MIR -24 238 28 283 238 87 40 chr12 120205507 120205633 -23580822 - MER5A DNA MER1_type -19 170 39 408 184 0 0 chr12 120206117 120206204 -23580251 - L1MB4 LINE L1 0 6180 6094 443 186 0 0 chr12 120206212 120206282 -23580173 + L1M3 LINE L1 5576 5645 -535 483 100 0 0 chr12 120206431 120206501 -23579954 + (CA)n Simple_repeat Simple_repeat 2 71 0 370 328 8 0 chr12 120206875 120207006 -23579449 - MIR SINE MIR 0 262 131 348 233 0 0 chr12 120207009 120207082 -23579373 + L2 LINE L2 3200 3272 0 1280 145 35 9 chr12 120207181 120207409 -23579046 - L1PA11 LINE L1 0 6174 5941 2389 67 16 80 chr12 120207439 120207826 -23578629 - L1PA10 LINE L1 -1 6167 5806 225 273 0 0 chr12 120208182 120208248 -23578207 + (TA)n Simple_repeat Simple_repeat 2 67 0 2046 93 58 14 chr12 120208330 120208621 -23577834 - AluSx SINE Alu -8 304 1 560 128 6 1 chr12 120209187 120209287 -23577168 + L1ME LINE L1 5706 5808 -354 2358 131 3 0 chr12 120209313 120209673 -23576782 + L1PB1 LINE L1 5783 6143 -8 183 42 0 0 chr12 120209684 120209708 -23576747 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 294 231 0 0 chr12 120209763 120209828 -23576627 - MIR SINE MIR 0 262 198 393 302 30 26 chr12 120209920 120210114 -23576341 + MER20B DNA MER1_type 5 202 -17 453 209 20 164 chr12 120210394 120210638 -23575817 + MER112 DNA MER1_type 6 214 -46 1088 328 12 5 chr12 120210672 120211090 -23575365 + L1MC4a LINE L1 5466 5886 -1922 344 233 30 68 chr12 120211073 120211206 -23575249 + L1MC5 LINE L1 7805 7932 -29 * 1646 172 7 0 chr12 120211807 120212086 -23574369 + AluJb SINE Alu 32 312 0 207 0 0 0 chr12 120212110 120212133 -23574322 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 560 339 14 0 chr12 120212195 120212416 -23574039 + L1MC4a LINE L1 5687 5910 -1898 1000 257 111 24 chr12 120213280 120213501 -23572954 - L2 LINE L2 0 3313 3113 1680 201 3 0 chr12 120213501 120213789 -23572666 - AluJo SINE Alu -23 289 1 1000 257 111 24 chr12 120213789 120214228 -23572227 - L2 LINE L2 -200 3113 2595 2089 162 19 3 chr12 120214291 120214655 -23571800 - L1MB7 LINE L1 -19 6165 5796 525 247 26 19 chr12 120214659 120214813 -23571642 - MIR SINE MIR -70 192 38 182 308 62 15 chr12 120215196 120215261 -23571194 - L2 LINE L2 -66 3206 3139 556 265 97 29 chr12 120215723 120216002 -23570453 + LTR16C LTR ERVL 193 490 -1 859 226 19 69 chr12 120216032 120216308 -23570147 - MIR SINE MIR 0 262 3 428 314 69 39 chr12 120216708 120216912 -23569543 - MIR SINE MIR -6 256 47 351 0 0 0 chr12 120217134 120217173 -23569282 + (CA)n Simple_repeat Simple_repeat 2 40 0 1010 202 77 0 chr12 120217461 120217694 -23568761 - LTR33A LTR ERVL -2 521 271 198 0 0 0 chr12 120217719 120217741 -23568714 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2900 133 81 4 chr12 120217781 120218300 -23568155 + LTR49 LTR ERV1 1 559 -36 306 296 106 25 chr12 120218324 120218506 -23567949 - LTR33A LTR ERVL -307 214 21 3491 112 14 22 chr12 120218543 120219164 -23567291 + MER4B LTR ERV1 3 779 0 284 271 0 0 chr12 120219164 120219223 -23567232 - L2 LINE L2 -3 3269 3211 1588 283 81 8 chr12 120219410 120219905 -23566550 + MLT1K LTR MaLR 56 586 -2 215 318 47 0 chr12 120219916 120220001 -23566454 - L2 LINE L2 -313 2959 2871 601 265 103 26 chr12 120220290 120220524 -23565931 - MIR SINE MIR -4 258 7 335 253 51 0 chr12 120221438 120221517 -23564938 + MER117 DNA MER1_type 1 83 -114 338 261 15 31 chr12 120221545 120221675 -23564780 + MER117 DNA MER1_type 69 196 -1 492 212 0 0 chr12 120222096 120222195 -23564260 - MIR SINE MIR -67 141 43 420 179 57 28 chr12 120222801 120222907 -23563548 + MIR3 SINE MIR 14 122 -86 240 59 0 0 chr12 120223176 120223210 -23563245 + (CA)n Simple_repeat Simple_repeat 2 35 0 366 298 130 10 chr12 120223699 120223907 -23562548 + MIR SINE MIR 22 254 -8 380 88 0 0 chr12 120224752 120224809 -23561646 - L1MA5 LINE L1 -2 6298 6242 1125 128 17 6 chr12 120224848 120225027 -23561428 - L1MA5 LINE L1 -47 6253 6073 1850 231 57 11 chr12 120225328 120225804 -23560651 + L1ME2 LINE L1 5292 5789 -2019 280 123 0 0 chr12 120225820 120225877 -23560578 - L1MA5 LINE L1 -2 6298 6242 23 0 0 0 chr12 120225893 120225916 -23560539 + AT_rich Low_complexity Low_complexity 1 23 0 2127 108 7 0 chr12 120225921 120226200 -23560255 + AluSp SINE Alu 14 294 -19 1333 132 40 18 chr12 120226228 120226455 -23560000 - L1MA5 LINE L1 -61 6239 6008 276 195 50 20 chr12 120226878 120226969 -23559486 - MLT1H LTR MaLR -264 162 52 384 22 0 0 chr12 120227076 120227121 -23559334 + (TG)n Simple_repeat Simple_repeat 2 46 0 369 263 11 0 chr12 120227324 120227419 -23559036 - L2 LINE L2 -15 3257 3162 771 204 31 6 chr12 120227440 120227602 -23558853 - MER5B DNA MER1_type -6 172 7 401 248 23 53 chr12 120228153 120228233 -23558222 - MIR SINE MIR -64 144 68 1956 186 177 2 chr12 120228233 120228663 -23557792 - MLT1D LTR MaLR 0 505 1 401 248 23 53 chr12 120228663 120228715 -23557740 - MIR SINE MIR -140 68 16 463 247 83 86 chr12 120229353 120229655 -23556800 + L1MC4a LINE L1 5643 5944 -177 270 221 13 39 chr12 120229645 120229722 -23556733 + L1ME2 LINE L1 6081 6155 -9 * 22 0 0 0 chr12 120229765 120229787 -23556668 + AT_rich Low_complexity Low_complexity 1 22 0 832 137 8 0 chr12 120230668 120230785 -23555670 - FLAM_C SINE Alu -25 118 1 450 316 21 11 chr12 120230928 120231118 -23555337 - MIR SINE MIR -69 193 2 625 301 118 21 chr12 120231243 120231665 -23554790 - MLT1L LTR MaLR -6 609 147 1678 226 23 3 chr12 120231835 120232189 -23554266 + LTR16C LTR ERVL 131 491 0 291 282 107 20 chr12 120232952 120233101 -23553354 - MIR3 SINE MIR -23 185 24 460 272 46 64 chr12 120233427 120233600 -23552855 - Charlie8 DNA MER1_type -2247 170 1 440 173 24 178 chr12 120233674 120233785 -23552670 + MER5B DNA MER1_type 1 67 -111 1802 185 0 3 chr12 120233785 120234077 -23552378 + AluJo SINE Alu 1 291 -21 440 173 24 178 chr12 120234077 120234173 -23552282 + MER5B DNA MER1_type 67 176 -2 296 337 11 0 chr12 120234182 120234271 -23552184 - L2 LINE L2 -37 3235 3146 914 239 118 31 chr12 120234292 120234682 -23551773 + MLT1J1 LTR MaLR 1 424 -22 397 145 0 0 chr12 120234802 120234864 -23551591 - L2 LINE L2 0 3272 3211 1903 154 62 9 chr12 120234932 120235257 -23551198 - MLT1A1 LTR MaLR 0 365 24 193 160 60 60 chr12 120235312 120235362 -23551093 - L2 LINE L2 -71 3242 3193 379 198 66 18 chr12 120235555 120235722 -23550733 + (CAGAGA)n Simple_repeat Simple_repeat 3 177 0 180 284 0 0 chr12 120236252 120236319 -23550136 + GA-rich Low_complexity Low_complexity 3 69 0 2161 229 160 25 chr12 120236866 120237571 -23548884 + L1MC4 LINE L1 6964 7713 -95 635 284 45 8 chr12 120237608 120237851 -23548604 + MIR SINE MIR 1 252 -10 195 238 24 0 chr12 120238001 120238043 -23548412 - MIR3 SINE MIR -49 159 117 2135 117 0 0 chr12 120238044 120238351 -23548104 + AluSx SINE Alu 1 307 0 232 263 13 13 chr12 120238400 120238476 -23547979 - L2 LINE L2 -8 3264 3189 199 298 97 32 chr12 120238817 120238941 -23547514 - L2 LINE L2 -16 3256 3125 1894 196 40 69 chr12 120239153 120239673 -23546782 + MLT1D LTR MaLR 1 505 0 494 266 8 8 chr12 120239778 120239906 -23546549 + LTR33 LTR ERVL 382 509 -12 3347 104 57 10 chr12 120240292 120240782 -23545673 - LTR64 LTR ERVK 0 513 1 511 245 14 7 chr12 120242153 120242292 -23544163 - MIR SINE MIR -26 236 97 962 235 49 7 chr12 120242298 120242688 -23543767 - LTR33A LTR ERVL 0 523 64 183 203 139 13 chr12 120242716 120242795 -23543660 - MIR SINE MIR -127 135 47 383 254 37 67 chr12 120242972 120243137 -23543318 + MIR3 SINE MIR 45 203 -51 724 177 98 18 chr12 120243907 120244071 -23542384 + MLT1C LTR MaLR 6 182 -285 1060 135 0 0 chr12 120244073 120244221 -23542234 + AluJb SINE Alu 147 294 -18 799 249 70 18 chr12 120244238 120244523 -23541932 + MLT1C LTR MaLR 168 467 0 333 210 62 0 chr12 120244530 120244611 -23541844 - MER5C DNA MER1_type -237 87 2 241 238 205 33 chr12 120244759 120244881 -23541574 + MER117 DNA MER1_type 39 181 -16 467 226 252 0 chr12 120245008 120245167 -23541288 - MIR SINE MIR -54 208 10 2221 135 0 0 chr12 120245235 120245547 -23540908 - AluJb SINE Alu 0 312 1 338 278 43 0 chr12 120245707 120245822 -23540633 - MIR SINE MIR 0 262 143 494 290 116 53 chr12 120245902 120246106 -23540349 - L2 LINE L2 -1 3271 3034 928 198 74 0 chr12 120246106 120246308 -23540147 + MER20 DNA MER1_type 1 217 -2 494 290 116 53 chr12 120246308 120246458 -23539997 - L2 LINE L2 -238 3034 2895 4260 121 21 0 chr12 120247336 120247958 -23538497 + MER41B LTR ERV1 1 635 0 2330 144 3 0 chr12 120247981 120248328 -23538127 - MER7A DNA MER2_type 0 346 1 465 259 88 0 chr12 120248330 120248477 -23537978 + MIR SINE MIR 90 249 -13 459 282 65 20 chr12 120248749 120249051 -23537404 + LTR16B LTR ERVL 77 464 0 493 326 0 6 chr12 120249073 120249254 -23537201 + (TG)n Simple_repeat Simple_repeat 1 180 0 263 209 0 45 chr12 120249354 120249421 -23537034 + L2 LINE L2 3207 3270 -2 1055 276 47 0 chr12 120249616 120249917 -23536538 + LTR16A LTR ERVL 132 446 -4 421 283 145 6 chr12 120249939 120250105 -23536350 - MIR SINE MIR -56 206 18 341 117 17 0 chr12 120251148 120251208 -23535247 + CT-rich Low_complexity Low_complexity 2 62 0 994 279 69 22 chr12 120251742 120252104 -23534351 - LTR16A LTR ERVL -11 439 61 2144 155 99 21 chr12 120252146 120252386 -23534069 - MLT1C LTR MaLR 0 467 247 270 81 0 0 chr12 120252386 120252423 -23534032 + (TG)n Simple_repeat Simple_repeat 2 38 0 2144 155 99 21 chr12 120252423 120252615 -23533840 - MLT1C LTR MaLR -220 247 1 1200 149 21 16 chr12 120252935 120253129 -23533326 + AluJb SINE Alu 2 196 -116 679 137 0 0 chr12 120253182 120253277 -23533178 + AluJb SINE Alu 202 296 -16 451 268 38 8 chr12 120253381 120253551 -23532904 + MER41B LTR ERV1 220 430 -205 378 313 61 46 chr12 120254543 120254872 -23531583 - MLT1K LTR MaLR -3 585 252 510 70 0 0 chr12 120254928 120254999 -23531456 + (TG)n Simple_repeat Simple_repeat 2 72 0 1062 149 0 0 chr12 120255012 120255166 -23531289 - AluSg/x SINE Alu -13 297 144 2286 88 0 14 chr12 120255350 120255679 -23530776 - AluSx SINE Alu 0 312 1 585 220 50 32 chr12 120255682 120255900 -23530555 + L1MC5 LINE L1 7696 7917 -44 500 191 11 0 chr12 120255932 120256021 -23530434 + L1PB4 LINE L1 6037 6126 -30 1969 135 0 0 chr12 120256021 120256287 -23530168 + AluSx SINE Alu 17 282 -30 2269 75 0 0 chr12 120256325 120256661 -23529794 + AluY SINE Alu 1 336 0 32 0 0 0 chr12 120256672 120256704 -23529751 + AT_rich Low_complexity Low_complexity 1 32 0 306 317 25 8 chr12 120256732 120256852 -23529603 - MLT1K LTR MaLR -360 228 107 2489 83 0 0 chr12 120257141 120257441 -23529014 - AluSx SINE Alu 0 312 13 2229 110 3 0 chr12 120257442 120257733 -23528722 - AluSx SINE Alu -20 292 1 411 192 0 0 chr12 120257736 120257809 -23528646 - L2 LINE L2 -10 3262 3190 189 217 55 15 chr12 120257833 120257898 -23528557 + MIR SINE MIR 89 154 -68 4678 143 22 18 chr12 120257904 120258055 -23528400 + Tigger2 DNA MER2_type 1 150 -2568 1692 174 9 37 chr12 120258055 120258376 -23528079 + AluJb SINE Alu 1 312 0 4678 143 22 18 chr12 120258376 120258999 -23527456 + Tigger2 DNA MER2_type 150 778 -1940 1738 124 0 34 chr12 120259032 120259297 -23527158 + Tigger2 DNA MER2_type 2463 2718 0 989 256 65 83 chr12 120259458 120259965 -23526490 - MLT1J LTR MaLR -2 509 12 239 233 27 27 chr12 120260303 120260376 -23526079 + MIR3 SINE MIR 123 195 -13 721 315 13 17 chr12 120261249 120261487 -23524968 - MIR SINE MIR -5 257 21 609 275 70 56 chr12 120261493 120261780 -23524675 + MLT1H LTR MaLR 1 291 -258 420 197 90 67 chr12 120261757 120261896 -23524559 + MLT1H LTR MaLR 258 549 0 * 203 323 16 0 chr12 120262194 120262256 -23524199 + (CA)n Simple_repeat Simple_repeat 2 64 0 407 289 167 0 chr12 120262767 120262881 -23523574 - L2 LINE L2 0 3272 3140 1045 227 79 0 chr12 120262946 120263162 -23523293 + LTR16C LTR ERVL 175 407 -84 926 174 101 0 chr12 120263219 120263397 -23523058 - MER20 DNA MER1_type 0 219 24 502 230 55 70 chr12 120263519 120263719 -23522736 - MER117 DNA MER1_type 0 197 1 632 205 59 128 chr12 120264479 120264962 -23521493 + L1MC2 LINE L1 5447 5893 -451 383 22 0 0 chr12 120264962 120265008 -23521447 - MADE1 DNA Mariner -34 46 1 632 205 59 128 chr12 120265008 120265314 -23521141 + L1MC2 LINE L1 5893 6218 -126 227 219 228 35 chr12 120265333 120265447 -23521008 + MIR SINE MIR 127 262 0 670 259 78 0 chr12 120265634 120265827 -23520628 + MLT1J LTR MaLR 4 211 -300 271 154 0 19 chr12 120265938 120265990 -23520465 + MLT1J LTR MaLR 413 463 -48 4301 121 34 0 chr12 120266094 120266707 -23519748 + MER41B LTR ERV1 2 635 0 1023 288 50 46 chr12 120266866 120267325 -23519130 - L2 LINE L2 -1 3312 2852 446 288 96 0 chr12 120267566 120267743 -23518712 - MER117 DNA MER1_type -3 194 1 532 235 77 31 chr12 120268307 120268503 -23517952 - MIR SINE MIR -9 253 49 278 234 31 0 chr12 120268684 120268748 -23517707 - L2 LINE L2 0 3313 3248 310 217 70 43 chr12 120269016 120269131 -23517324 + L1ME3A LINE L1 5813 5930 -240 1621 127 18 133 chr12 120269189 120269319 -23517136 + AluJo SINE Alu 2 145 -157 1273 60 0 11 chr12 120269319 120269501 -23516954 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1621 127 18 133 chr12 120269501 120269709 -23516746 + AluJo SINE Alu 145 301 -1 309 51 0 0 chr12 120269725 120269764 -23516691 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 232 61 20 chr12 120269868 120269967 -23516488 + L1MC5 LINE L1 7836 7938 -23 344 164 27 14 chr12 120270002 120270075 -23516380 + MER116 DNA Mariner 1 74 -6 219 114 0 0 chr12 120270180 120270215 -23516240 + (CGTG)n Simple_repeat Simple_repeat 2 36 0 2319 101 3 0 chr12 120270288 120270585 -23515870 + AluSp SINE Alu 1 298 -15 297 304 43 29 chr12 120271136 120271274 -23515181 - MER5A DNA MER1_type -15 174 35 359 158 0 0 chr12 120271477 120271534 -23514921 - L2 LINE L2 0 3313 3257 203 275 0 50 chr12 120271552 120271632 -23514823 + A-rich Low_complexity Low_complexity 2 77 0 325 185 31 15 chr12 120272058 120272123 -23514332 + MER81 DNA DNA 8 73 -41 2548 47 0 7 chr12 120272144 120272443 -23514012 + AluY SINE Alu 1 297 -14 418 204 46 9 chr12 120272507 120272615 -23513840 + MIR SINE MIR 80 191 -71 351 221 0 0 chr12 120272748 120272816 -23513639 + L2 LINE L2 3245 3312 -1 2106 130 3 3 chr12 120272853 120273152 -23513303 - AluJo SINE Alu -13 299 1 1681 226 97 36 chr12 120274126 120274622 -23511833 + LTR26B LTR ERV1 6 531 0 673 279 35 5 chr12 120274878 120275079 -23511376 + MIR SINE MIR 14 220 -42 306 260 31 31 chr12 120275127 120275223 -23511232 - MIR SINE MIR -126 136 41 1245 267 35 0 chr12 120275881 120276199 -23510256 - LTR16C LTR ERVL -11 480 152 246 343 147 0 chr12 120276392 120276494 -23509961 + L2 LINE L2 3122 3238 -34 192 158 0 0 chr12 120276519 120276557 -23509898 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 30 84 0 25 chr12 120276678 120276797 -23509658 + AT_rich Low_complexity Low_complexity 1 116 0 1130 248 65 41 chr12 120277022 120277361 -23509094 + MLT1J LTR MaLR 2 348 -163 2260 120 0 3 chr12 120278031 120278339 -23508116 + AluSx SINE Alu 2 308 -4 2495 118 4 3 chr12 120278484 120278957 -23507498 - LTR26B LTR ERV1 0 531 1 392 298 13 46 chr12 120279204 120279355 -23507100 - MLT1H LTR MaLR -237 312 167 439 230 191 28 chr12 120279360 120279538 -23506917 - MLT1H LTR MaLR -342 207 1 236 230 27 40 chr12 120279575 120279649 -23506806 + MER103 DNA DNA 42 114 -52 266 245 149 15 chr12 120279820 120279956 -23506499 + MIR3 SINE MIR 10 166 -69 319 343 103 25 chr12 120280815 120281057 -23505398 - L3 LINE CR1 -87 1490 1230 672 318 83 34 chr12 120281308 120281950 -23504505 - L2 LINE L2 -869 2445 1773 1962 112 4 0 chr12 120282085 120282354 -23504101 + AluSq SINE Alu 35 304 -9 308 274 12 12 chr12 120282428 120282512 -23503943 - L2 LINE L2 -3 3269 3186 2424 215 55 6 chr12 120282650 120283194 -23503261 - L1ME2 LINE L1 -9 6155 5585 1827 150 18 0 chr12 120283199 120283472 -23502983 + AluJb SINE Alu 1 278 -34 600 144 0 43 chr12 120283472 120283611 -23502844 + (GGAGAA)n Simple_repeat Simple_repeat 4 136 0 529 233 46 15 chr12 120283615 120283876 -23502579 - L1ME2 LINE L1 -575 5589 5128 4798 217 43 14 chr12 120283901 120284543 -23501912 - L1M4 LINE L1 -884 5262 4640 2073 133 3 0 chr12 120284543 120284836 -23501619 - AluSq SINE Alu -19 294 1 4798 217 43 14 chr12 120284836 120285419 -23501036 - L1M4 LINE L1 -1506 4640 4001 4308 105 13 3 chr12 120285955 120286574 -23499881 + L1PB2 LINE L1 5525 6149 -2 980 138 27 21 chr12 120287214 120287402 -23499053 + MER53 DNA DNA 1 189 0 235 239 130 94 chr12 120287522 120287660 -23498795 - MIR SINE MIR -33 229 87 381 131 0 0 chr12 120287735 120287796 -23498659 + (TG)n Simple_repeat Simple_repeat 2 62 0 432 111 0 0 chr12 120287801 120287873 -23498582 + (TC)n Simple_repeat Simple_repeat 1 72 0 597 299 147 22 chr12 120288456 120288936 -23497519 - L2 LINE L2 -5 3308 2782 278 320 10 10 chr12 120289774 120289871 -23496584 + MIR SINE MIR 14 110 -152 507 101 0 0 chr12 120289875 120289944 -23496511 + MER33 DNA MER1_type 6 74 -250 3159 123 38 9 chr12 120289959 120290486 -23495969 - L1MA5A LINE L1 -1 6296 5755 257 313 43 9 chr12 120290501 120290616 -23495839 + MIR SINE MIR 91 209 -53 324 291 50 50 chr12 120290684 120290825 -23495630 - MIR SINE MIR -66 196 56 241 291 58 29 chr12 120290917 120291020 -23495435 + L1ME4a LINE L1 5844 5949 -172 2353 32 46 4 chr12 120291108 120291388 -23495067 + AluY SINE Alu 1 292 -19 668 217 105 105 chr12 120292900 120293176 -23493279 + Charlie8 DNA MER1_type 1 276 -2141 356 257 0 0 chr12 120293226 120293300 -23493155 + Charlie8 DNA MER1_type 2343 2416 -1 243 304 0 89 chr12 120293426 120293538 -23492917 + MIR SINE MIR 39 140 -68 268 254 16 0 chr12 120293615 120293678 -23492777 + MLT1J2 LTR MaLR 1 64 -526 210 287 90 25 chr12 120293678 120293800 -23492655 + MIR SINE MIR 127 256 -6 547 198 118 108 chr12 120294855 120295293 -23491162 + MLT1J LTR MaLR 11 492 -19 1477 145 88 34 chr12 120295308 120295570 -23490885 - AluJo SINE Alu -36 276 1 473 200 231 0 chr12 120295619 120295749 -23490706 - MLT1H LTR MaLR -2 547 388 1378 151 91 36 chr12 120295752 120296004 -23490451 - AluJo SINE Alu -46 266 1 953 209 158 88 chr12 120296053 120296564 -23489891 - MLT1H LTR MaLR -2 547 1 340 257 14 0 chr12 120297003 120297077 -23489378 + HAL1 LINE L1 817 891 -1616 617 179 119 0 chr12 120297474 120297608 -23488847 + MLT1A1 LTR MaLR 1 150 -215 1416 163 72 38 chr12 120297617 120297881 -23488574 + AluJo SINE Alu 1 273 -39 1127 205 29 5 chr12 120297898 120298103 -23488352 + MLT1A1 LTR MaLR 156 365 0 1983 154 0 28 chr12 120298286 120298604 -23487851 + AluSx SINE Alu 1 309 -3 412 268 70 7 chr12 120298608 120298750 -23487705 + L1ME LINE L1 5511 5661 -460 287 262 0 0 chr12 120298767 120298851 -23487604 + (TA)n Simple_repeat Simple_repeat 2 85 0 831 289 103 26 chr12 120298960 120299416 -23487039 + LTR16C LTR ERVL 1 491 0 434 347 108 28 chr12 120299698 120300021 -23486434 - L2 LINE L2 -10 3262 2914 607 243 182 48 chr12 120300095 120300307 -23486148 + MLT1J2 LTR MaLR 96 365 -85 2220 165 160 20 chr12 120300307 120300756 -23485699 + MLT2B2 LTR ERVL 4 515 0 607 243 182 48 chr12 120300756 120300856 -23485599 + MLT1J2 LTR MaLR 365 450 0 204 152 43 0 chr12 120301284 120301330 -23485125 - L2 LINE L2 -680 2634 2587 187 246 71 111 chr12 120301426 120301552 -23484903 - L2 LINE L2 -556 2758 2638 315 176 25 34 chr12 120301880 120301999 -23484456 + GA-rich Low_complexity Low_complexity 6 123 0 777 191 157 19 chr12 120302254 120302464 -23483991 + MIR SINE MIR 13 251 -11 247 255 0 0 chr12 120302430 120302481 -23483974 + L2 LINE L2 3222 3272 0 * 329 315 101 29 chr12 120302552 120303105 -23483350 + L2 LINE L2 2670 3264 -49 1950 136 0 0 chr12 120303128 120303400 -23483055 + AluSx SINE Alu 1 272 -40 2216 102 0 0 chr12 120303410 120303694 -23482761 + AluY SINE Alu 10 293 -18 199 345 35 76 chr12 120303956 120304153 -23482302 + L2 LINE L2 3075 3263 -9 226 69 0 0 chr12 120304456 120304650 -23481805 - Alu SINE Alu 0 445 252 2156 105 0 21 chr12 120304659 120304945 -23481510 - AluSx SINE Alu -32 280 1 383 282 51 26 chr12 120305085 120305241 -23481214 - MIR SINE MIR -26 236 77 495 171 181 0 chr12 120305255 120305360 -23481095 + AluJo SINE Alu 2 125 -177 1005 135 0 0 chr12 120305360 120305523 -23480932 + (GGAA)n Simple_repeat Simple_repeat 2 164 0 1173 244 172 3 chr12 120306653 120307043 -23479412 + LTR33A LTR ERVL 66 521 -2 419 297 32 19 chr12 120307254 120307409 -23479046 + MIR SINE MIR 19 175 -87 1483 127 0 9 chr12 120308580 120308793 -23477662 + AluJo SINE Alu 85 295 -17 751 181 0 0 chr12 120308795 120308911 -23477544 + AluJo SINE Alu 1 116 -186 2878 77 13 13 chr12 120308911 120309300 -23477155 + L1MA1 LINE L1 5903 6291 -11 1148 186 0 0 chr12 120309327 120309521 -23476934 + AluJo SINE Alu 105 298 -14 631 254 116 26 chr12 120309692 120309995 -23476460 - LTR16C LTR ERVL -47 444 115 326 256 23 0 chr12 120310019 120310105 -23476350 + MER81 DNA DNA 25 112 -2 274 295 76 9 chr12 120310113 120310218 -23476237 - LTR16C LTR ERVL -280 211 100 2227 130 56 26 chr12 120310419 120310797 -23475658 + MLT2C2 LTR ERVL 28 416 -48 219 36 0 0 chr12 120310800 120310828 -23475627 + (TA)n Simple_repeat Simple_repeat 2 29 0 296 140 20 0 chr12 120310856 120310906 -23475549 + MLT1H LTR MaLR 464 514 -35 332 35 70 70 chr12 120310945 120310961 -23475494 + MLT2B1 LTR ERVL 459 474 -46 198 0 0 0 chr12 120310961 120310983 -23475472 + (TG)n Simple_repeat Simple_repeat 2 23 0 189 0 0 0 chr12 120310982 120311003 -23475452 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 * 332 35 70 70 chr12 120310983 120311043 -23475412 + MLT2B1 LTR ERVL 473 520 0 1848 224 120 7 chr12 120311219 120311660 -23474795 + MLT1J LTR MaLR 19 509 -2 1631 251 108 18 chr12 120311854 120312356 -23474099 + MLT1H LTR MaLR 1 547 -2 1671 143 0 0 chr12 120312425 120312670 -23473785 + AluSx SINE Alu 55 299 -13 604 310 26 0 chr12 120312702 120312942 -23473513 + L1MC4a LINE L1 5538 5785 -336 284 286 52 19 chr12 120313001 120313155 -23473300 + L1MC4a LINE L1 5768 5926 -1882 494 204 10 0 chr12 120313487 120313590 -23472865 - L1MA5 LINE L1 -11 6289 6186 503 244 201 6 chr12 120313619 120313783 -23472672 - MER91A DNA MER1_type 0 196 1 3158 58 22 0 chr12 120314023 120314435 -23472020 - L1PA8 LINE L1 -2 6170 5750 626 347 9 60 chr12 120314588 120314919 -23471536 - L2 LINE L2 0 3272 2959 236 307 119 10 chr12 120314967 120315068 -23471387 + LTR33 LTR ERVL 136 247 -274 531 0 0 0 chr12 120315132 120315191 -23471264 + (TC)n Simple_repeat Simple_repeat 2 60 0 414 251 66 30 chr12 120315203 120315370 -23471085 + LTR33 LTR ERVL 349 521 0 707 284 36 57 chr12 120315371 120315705 -23470750 - L2 LINE L2 -838 2476 2150 221 316 153 31 chr12 120315705 120315901 -23470554 - L2 LINE L2 -364 2950 2731 813 255 34 25 chr12 120317221 120317456 -23468999 - MIR SINE MIR 0 262 26 952 316 52 37 chr12 120317625 120318033 -23468422 - LTR16C LTR ERVL -2 489 76 377 282 141 57 chr12 120318842 120319069 -23467386 + MLT1K LTR MaLR 125 370 -218 303 239 28 0 chr12 120319110 120319181 -23467274 - MLT1K LTR MaLR 0 588 516 901 150 0 0 chr12 120319197 120319324 -23467131 + FLAM_C SINE Alu 1 127 -16 1563 186 14 25 chr12 120319341 120319626 -23466829 + AluJo SINE Alu 1 282 -30 503 228 99 82 chr12 120319633 120319765 -23466690 - MLT1K LTR MaLR -61 527 399 261 0 0 0 chr12 120319765 120319794 -23466661 + (CA)n Simple_repeat Simple_repeat 1 29 0 503 228 99 82 chr12 120319794 120319984 -23466471 - MLT1K LTR MaLR -189 399 131 812 167 0 141 chr12 120320025 120320217 -23466238 + MER58A DNA MER1_type 1 165 0 391 273 0 0 chr12 120320218 120320306 -23466149 + MER58A DNA MER1_type 137 224 0 284 264 81 0 chr12 120320355 120320442 -23466013 + MIR SINE MIR 61 154 -108 357 62 0 0 chr12 120320453 120320501 -23465954 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 182 182 91 0 chr12 120321183 120321227 -23465228 + MIR SINE MIR 101 148 -60 506 330 21 21 chr12 120321351 120321584 -23464871 - MIR SINE MIR -11 251 19 244 267 0 0 chr12 120321581 120321641 -23464814 - MIR SINE MIR -119 143 84 * 338 185 0 0 chr12 120321754 120321819 -23464636 - MIR SINE MIR -79 183 119 430 267 74 22 chr12 120322008 120322143 -23464312 + MIR SINE MIR 15 156 -106 901 214 0 0 chr12 120322150 120322318 -23464137 - FRAM SINE Alu -11 165 1 3707 216 158 56 chr12 120322459 120323831 -23462624 + L1MC4 LINE L1 6433 8036 -6 1380 241 89 36 chr12 120324152 120324377 -23462078 + L2 LINE L2 2492 2704 -609 1894 163 0 0 chr12 120324377 120324699 -23461756 + AluSx SINE Alu 1 322 0 1380 241 89 36 chr12 120324699 120325140 -23461315 + L2 LINE L2 2704 3181 -132 1889 171 30 12 chr12 120325163 120325491 -23460964 + Tigger3(Golem) DNA MER2_type 1 334 -2695 5530 124 13 3 chr12 120325494 120326031 -23460424 + L1PB4 LINE L1 5236 5786 -370 222 37 0 0 chr12 120326031 120326058 -23460397 + (TA)n Simple_repeat Simple_repeat 2 28 0 5530 124 13 3 chr12 120326058 120326386 -23460069 + L1PB4 LINE L1 5786 6109 -47 1704 101 4 0 chr12 120326389 120326617 -23459838 + Tigger3(Golem) DNA MER2_type 1545 1773 -1256 16041 113 44 38 chr12 120326644 120326981 -23459474 + Tigger3(Golem) DNA MER2_type 328 662 -2367 2257 110 7 7 chr12 120326981 120327290 -23459165 + AluSx SINE Alu 1 309 -3 16041 113 44 38 chr12 120327290 120329103 -23457352 + Tigger3(Golem) DNA MER2_type 662 2463 -566 692 83 147 0 chr12 120329103 120329212 -23457243 + L1PA14 LINE L1 6026 6150 -11 16041 113 44 38 chr12 120329212 120329459 -23456996 + Tigger3(Golem) DNA MER2_type 2463 2707 -322 2059 98 73 0 chr12 120329459 120329745 -23456710 - AluSx SINE Alu -5 307 1 16041 113 44 38 chr12 120329745 120330032 -23456423 + Tigger3(Golem) DNA MER2_type 2707 3029 0 272 282 45 27 chr12 120330036 120330146 -23456309 + L2 LINE L2 3161 3272 0 201 121 0 0 chr12 120330147 120330180 -23456275 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 1794 154 24 14 chr12 120330369 120330661 -23455794 - AluJo SINE Alu -17 295 1 3161 156 29 20 chr12 120330689 120331285 -23455170 + L1MB4 LINE L1 5580 6180 0 207 0 0 0 chr12 120331446 120331469 -23454986 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1751 153 0 31 chr12 120331477 120331771 -23454684 - AluJb SINE Alu -22 290 6 1837 162 3 7 chr12 120331824 120332121 -23454334 + AluJo SINE Alu 2 297 -15 272 232 84 71 chr12 120332143 120332298 -23454157 - L2 LINE L2 -5 3308 3152 337 364 7 7 chr12 120332481 120332635 -23453820 + MIR SINE MIR 2 155 -107 1830 172 86 14 chr12 120332807 120333167 -23453288 + MLT1B LTR MaLR 5 390 0 204 259 0 19 chr12 120333171 120333225 -23453230 - L2 LINE L2 -75 3238 3186 279 261 0 0 chr12 120333347 120333416 -23453039 - MIR SINE MIR -70 138 70 1856 156 25 0 chr12 120333741 120334037 -23452418 + AluSx SINE Alu 1 303 0 1828 152 3 41 chr12 120334087 120334403 -23452052 - AluJo SINE Alu -8 304 1 478 241 179 29 chr12 120334406 120334746 -23451709 + L1ME4a LINE L1 5623 6013 -108 317 289 0 0 chr12 120334928 120335011 -23451444 - MIR SINE MIR 0 262 180 * 848 227 169 56 chr12 120335008 120335228 -23451227 + L2 LINE L2 2853 3047 -266 303 28 0 0 chr12 120335228 120335264 -23451191 + (CA)n Simple_repeat Simple_repeat 2 37 0 848 227 169 56 chr12 120335264 120335439 -23451016 + L2 LINE L2 3047 3293 -20 483 245 147 0 chr12 120335463 120335606 -23450849 - MIR SINE MIR -84 178 15 238 337 22 0 chr12 120336029 120336118 -23450337 + L2 LINE L2 3207 3297 -16 262 270 0 0 chr12 120336135 120336198 -23450257 - MIR SINE MIR -69 139 77 428 308 159 24 chr12 120336373 120336707 -23449748 + MLT1L LTR MaLR 227 605 -10 504 194 45 117 chr12 120336717 120336939 -23449516 - MIR SINE MIR -3 259 54 527 322 35 26 chr12 120337757 120337987 -23448468 - MLT1K LTR MaLR -2 586 355 232 151 245 0 chr12 120338193 120338246 -23448209 + MIR SINE MIR 187 252 -10 1265 244 92 51 chr12 120338312 120338555 -23447900 + LTR16C LTR ERVL 86 352 -139 3489 103 51 0 chr12 120338555 120339081 -23447374 - L1PB4 LINE L1 -3 6153 5601 1265 244 92 51 chr12 120339081 120339226 -23447229 + LTR16C LTR ERVL 352 490 -1 193 287 218 0 chr12 120339283 120339384 -23447071 + L2 LINE L2 3150 3272 0 189 419 8 0 chr12 120339542 120339658 -23446797 + MIR SINE MIR 28 144 -64 900 225 31 27 chr12 120339658 120339792 -23446663 + MIR SINE MIR 4 141 -121 1015 171 57 19 chr12 120339792 120340003 -23446452 - MER20 DNA MER1_type 0 219 1 900 225 31 27 chr12 120340003 120340126 -23446329 + MIR SINE MIR 141 262 0 474 227 77 96 chr12 120340273 120340320 -23446135 + MIR SINE MIR 41 87 -175 949 132 44 22 chr12 120340320 120340502 -23445953 - MER53 DNA DNA -3 186 1 474 227 77 96 chr12 120340502 120340674 -23445781 + MIR SINE MIR 87 256 -6 207 307 107 0 chr12 120340711 120340786 -23445669 + L2 LINE L2 3179 3261 -52 735 250 61 22 chr12 120340795 120341023 -23445432 + MIR SINE MIR 20 256 -6 2110 126 0 29 chr12 120341157 120341467 -23444988 + AluSx SINE Alu 1 301 -11 253 267 22 22 chr12 120342319 120342409 -23444046 + GA-rich Low_complexity Low_complexity 2 91 0 2343 104 0 13 chr12 120342499 120342816 -23443639 - AluSq SINE Alu 0 313 1 459 274 48 7 chr12 120342816 120342962 -23443493 + MIR SINE MIR 37 188 -74 2326 106 56 11 chr12 120343201 120343560 -23442895 - L1PA11 LINE L1 -10 6164 5790 422 143 48 38 chr12 120344160 120344265 -23442190 - MER103 DNA DNA -12 154 49 2403 141 53 10 chr12 120344493 120344905 -23441550 - MSTB1 LTR MaLR -2 430 1 395 239 35 9 chr12 120345436 120345549 -23440906 + L1MC5 LINE L1 7786 7901 -60 540 310 24 10 chr12 120346237 120346445 -23440010 - MER20B DNA MER1_type -5 214 1 1590 256 42 0 chr12 120346456 120346839 -23439616 + MLT1J LTR MaLR 69 467 -44 731 209 148 22 chr12 120347323 120347553 -23438902 - MIR SINE MIR -2 260 2 1102 185 70 0 chr12 120347581 120347781 -23438674 + MER58A DNA MER1_type 11 224 0 * 1327 201 72 54 chr12 120347781 120348224 -23438231 + MER113 DNA MER1_type? 70 520 -1 1154 123 35 0 chr12 120348288 120348458 -23437997 - AluY SINE Alu -13 298 123 268 43 21 21 chr12 120348458 120348505 -23437950 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2395 64 0 0 chr12 120348505 120348788 -23437667 - AluY SINE Alu -28 283 1 209 254 209 0 chr12 120348971 120349038 -23437417 - MIR SINE MIR -149 113 33 2869 99 33 21 chr12 120349130 120349553 -23436902 - MSTC LTR MaLR 0 428 1 1796 149 25 48 chr12 120349629 120349944 -23436511 - AluJo SINE Alu -4 308 1 257 333 39 0 chr12 120349971 120350073 -23436382 + L2 LINE L2 2782 2887 -427 505 151 29 1 chr12 120350090 120350179 -23436276 - MER20 DNA MER1_type -109 110 29 997 206 9 40 chr12 120350419 120350544 -23435911 + L1PB4 LINE L1 5920 6036 -120 2543 110 5 27 chr12 120350544 120350916 -23435539 - THE1B LTR MaLR 0 364 1 997 206 9 40 chr12 120350916 120351013 -23435442 + L1PB4 LINE L1 6036 6135 -21 1709 159 10 40 chr12 120351031 120351332 -23435123 + AluJb SINE Alu 1 292 -20 317 328 49 8 chr12 120352000 120352122 -23434333 + L2 LINE L2 3146 3272 0 1257 208 92 32 chr12 120352202 120352549 -23433906 + LTR16A1 LTR ERVL 59 426 -31 503 162 10 0 chr12 120352665 120352764 -23433691 + (TGGA)n Simple_repeat Simple_repeat 1 100 0 592 256 35 15 chr12 120352848 120353047 -23433408 + MIR SINE MIR 47 249 -13 231 125 0 0 chr12 120353053 120353093 -23433362 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1531 172 0 29 chr12 120353116 120353389 -23433066 + AluJo SINE Alu 39 303 -9 386 214 136 48 chr12 120353881 120354087 -23432368 + L2 LINE L2 2531 2754 -560 1115 159 80 110 chr12 120354089 120354390 -23432065 - AluJo SINE Alu -3 309 18 322 282 69 8 chr12 120354393 120354524 -23431931 + L2 LINE L2 2748 2886 -428 2313 108 0 0 chr12 120354659 120354954 -23431501 - AluSq SINE Alu -18 295 1 2124 142 0 3 chr12 120354954 120355256 -23431199 - AluSx SINE Alu -11 301 1 484 271 77 72 chr12 120355264 120355356 -23431099 - L1MC4a LINE L1 -1750 6058 5968 2041 149 6 19 chr12 120355356 120355671 -23430784 - AluSx SINE Alu -1 311 1 484 271 77 72 chr12 120355671 120355966 -23430489 - L1MC4a LINE L1 -1840 5968 5669 2362 94 0 0 chr12 120356032 120356341 -23430114 - AluSq SINE Alu -4 309 1 2354 90 0 16 chr12 120356375 120356686 -23429769 + AluY SINE Alu 1 306 -5 253 79 0 26 chr12 120356686 120356724 -23429731 - L1ME LINE L1 -358 5812 5776 387 188 97 49 chr12 120356727 120356871 -23429584 - L1ME LINE L1 -344 5818 5668 2173 94 3 66 chr12 120356938 120357257 -23429198 + AluSp SINE Alu 1 299 -14 311 322 16 16 chr12 120358682 120358803 -23427652 - MER5A DNA MER1_type -19 170 50 2282 119 0 7 chr12 120359017 120359327 -23427128 - AluSx SINE Alu -1 311 4 2351 91 7 0 chr12 120359384 120359680 -23426775 - AluSx SINE Alu -14 298 1 1904 160 3 7 chr12 120359683 120359983 -23426472 - AluJb SINE Alu -13 299 1 279 0 0 0 chr12 120360643 120360674 -23425781 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 213 108 0 0 chr12 120360794 120360831 -23425624 + (T)n Simple_repeat Simple_repeat 1 37 0 1143 208 135 4 chr12 120360839 120361099 -23425356 - AluJb SINE Alu -5 297 4 515 178 69 0 chr12 120361261 120361279 -23425176 - L1M3 LINE L1 -540 5794 5779 2001 132 34 0 chr12 120361279 120361574 -23424881 - AluSx SINE Alu -7 305 1 515 178 69 0 chr12 120361574 120361656 -23424799 - L1M3 LINE L1 -555 5779 5687 419 233 61 50 chr12 120361890 120361973 -23424482 - L1MC5 LINE L1 -46 7915 7834 2173 120 7 0 chr12 120361973 120362274 -23424181 - AluSx SINE Alu -9 303 1 419 233 61 50 chr12 120362274 120362370 -23424085 - L1MC5 LINE L1 -127 7834 7734 2345 105 3 0 chr12 120362384 120362689 -23423766 - AluSx SINE Alu -6 306 1 1840 172 0 3 chr12 120363613 120363910 -23422545 - AluJb SINE Alu -12 300 5 646 128 0 18 chr12 120363912 120364021 -23422434 - AluJb SINE Alu -175 137 31 4455 42 46 135 chr12 120364091 120364849 -23421606 - L1PA8 LINE L1 -4 6168 5478 374 285 49 32 chr12 120364976 120365099 -23421356 + L2 LINE L2 3142 3266 -6 242 253 147 0 chr12 120365260 120365335 -23421120 - MIR SINE MIR -86 176 91 219 36 0 0 chr12 120365350 120365378 -23421077 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1821 167 7 0 chr12 120365383 120365664 -23420791 - AluJo SINE Alu -29 283 1 281 300 22 22 chr12 120365779 120365869 -23420586 - L2 LINE L2 -42 3230 3141 1881 158 3 0 chr12 120365910 120366201 -23420254 + AluJb SINE Alu 5 296 -16 633 214 107 59 chr12 120366425 120366588 -23419867 - L1MC5 LINE L1 -36 7925 7740 2139 114 0 32 chr12 120366588 120366922 -23419533 - AluSx SINE Alu 0 312 1 633 214 107 59 chr12 120366922 120367047 -23419408 - L1MC5 LINE L1 -221 7740 7623 306 0 0 0 chr12 120367063 120367097 -23419358 + (CA)n Simple_repeat Simple_repeat 2 35 0 2108 130 3 0 chr12 120367109 120367401 -23419054 - AluSx SINE Alu -18 294 2 24 32 0 0 chr12 120367530 120367561 -23418894 + AT_rich Low_complexity Low_complexity 1 31 0 2201 91 0 0 chr12 120367718 120368017 -23418438 + AluSc SINE Alu 3 301 0 984 199 89 48 chr12 120368098 120368434 -23418021 - L1MC5 LINE L1 -499 7462 7113 1530 207 30 3 chr12 120368477 120368781 -23417674 - AluJo SINE Alu 0 312 1 681 164 17 0 chr12 120368788 120368904 -23417551 - AluJo SINE Alu -176 136 19 671 262 199 44 chr12 120368963 120369231 -23417224 - L1MC4a LINE L1 -211 5910 6113 1650 171 23 13 chr12 120369231 120369530 -23416925 + AluJo SINE Alu 2 303 -9 671 262 199 44 chr12 120369530 120370071 -23416384 - L1MC4a LINE L1 -7 6114 5658 42 20 0 0 chr12 120370337 120370386 -23416069 + AT_rich Low_complexity Low_complexity 1 49 0 623 148 148 0 chr12 120370418 120370519 -23415936 - FLAM_C SINE Alu -16 117 2 1816 139 39 29 chr12 120371570 120371879 -23414576 - AluSx SINE Alu 0 312 1 878 172 86 0 chr12 120371888 120372039 -23414416 - FAM SINE Alu -8 167 4 1980 108 59 11 chr12 120372304 120372591 -23413864 + AluSq SINE Alu 1 301 -12 1233 291 74 14 chr12 120373122 120373542 -23412913 - L2 LINE L2 -1 3312 2868 506 179 168 0 chr12 120373572 120373667 -23412788 + AluJo/FLAM SINE Alu 2 112 -200 1127 93 0 0 chr12 120373667 120373806 -23412649 - AluSq/x SINE Alu -174 139 1 25 51 0 0 chr12 120373850 120373889 -23412566 + AT_rich Low_complexity Low_complexity 1 39 0 2064 155 85 18 chr12 120374420 120374644 -23411811 - MSTB LTR MaLR 0 426 219 2247 105 0 13 chr12 120374644 120374949 -23411506 - AluSx SINE Alu -11 301 1 2064 155 85 18 chr12 120374949 120375123 -23411332 - MSTB LTR MaLR -207 219 1 1887 168 0 0 chr12 120375936 120376233 -23410222 + AluJo SINE Alu 1 297 -15 738 259 97 40 chr12 120376351 120376661 -23409794 - MER113 DNA MER1_type? -41 480 138 2190 136 0 0 chr12 120376661 120376969 -23409486 - AluSx SINE Alu -4 308 1 738 259 97 40 chr12 120376969 120377082 -23409373 - MER113 DNA MER1_type? -383 138 33 1300 209 0 0 chr12 120377083 120377313 -23409142 - AluJb SINE Alu -19 293 64 387 219 56 12 chr12 120377313 120377426 -23409029 - MER5A DNA MER1_type -77 106 1 382 271 40 11 chr12 120377458 120377644 -23408811 - MIR SINE MIR -3 259 68 406 154 0 0 chr12 120378532 120378597 -23407858 - AluJ/FRAM SINE Alu -7 295 231 348 24 0 0 chr12 120378605 120378646 -23407809 + (GA)n Simple_repeat Simple_repeat 2 42 0 1534 122 0 0 chr12 120378912 120379126 -23407329 - AluSg/x SINE Alu -17 295 82 510 165 176 0 chr12 120379186 120379277 -23407178 - AluSq/x SINE Alu -205 108 2 766 168 8 0 chr12 120379313 120379438 -23407017 - FLAM_A SINE Alu -4 129 4 340 273 91 59 chr12 120379512 120379688 -23406767 - L1ME4a LINE L1 -237 5884 5696 1617 131 124 0 chr12 120379688 120379955 -23406500 - AluSx SINE Alu -12 300 1 340 273 91 59 chr12 120379955 120380031 -23406424 - L1ME4a LINE L1 -425 5696 5624 201 133 0 0 chr12 120380156 120380186 -23406269 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2285 92 7 0 chr12 120380719 120381012 -23405443 + AluSq SINE Alu 1 295 -18 1533 156 49 38 chr12 120381059 120381222 -23405233 - AluJo SINE Alu -21 291 122 2162 83 3 61 chr12 120381222 120381548 -23404907 + AluSx SINE Alu 1 307 -5 1533 156 49 38 chr12 120381548 120381672 -23404783 - AluJo SINE Alu -190 122 1 1922 149 0 49 chr12 120381757 120382085 -23404370 - AluJb SINE Alu 0 312 1 180 0 0 0 chr12 120382565 120382585 -23403870 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 871 131 0 16 chr12 120382587 120382709 -23403746 - FLAM_C SINE Alu -23 120 1 194 118 29 59 chr12 120382925 120382993 -23403462 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 744 150 0 57 chr12 120383119 120383259 -23403196 - FLAM_C SINE Alu -1 132 1 2146 134 0 0 chr12 120383641 120383933 -23402522 + AluSx SINE Alu 1 292 -20 210 37 0 0 chr12 120383938 120383965 -23402490 + (CAA)n Simple_repeat Simple_repeat 2 28 0 689 131 85 51 chr12 120383973 120384149 -23402306 - L1MC5 LINE L1 -44 7917 7736 1795 150 57 0 chr12 120384185 120384465 -23401990 - AluSx SINE Alu -16 296 1 510 207 21 48 chr12 120384467 120384612 -23401843 - L1MD3 LINE L1 -9 7986 7846 1082 288 73 5 chr12 120385304 120385445 -23401010 - L1MEc LINE L1 -4973 1423 1293 826 169 0 0 chr12 120385445 120385575 -23400880 + FLAM_C SINE Alu 1 130 -3 1082 288 73 5 chr12 120385575 120385874 -23400581 - L1MEc LINE L1 -5103 1293 953 2046 143 3 3 chr12 120385880 120386188 -23400267 - AluSx SINE Alu -4 308 1 2085 118 24 0 chr12 120387518 120387814 -23398641 - AluSx SINE Alu -9 303 1 2123 122 3 0 chr12 120388656 120388942 -23397513 - AluSx SINE Alu -21 291 5 400 269 71 7 chr12 120389464 120389605 -23396850 - L2 LINE L2 0 3313 3164 606 85 0 11 chr12 120389608 120389702 -23396753 + AluJ/FLAM SINE Alu 2 94 -218 335 300 35 50 chr12 120390104 120390304 -23396151 - L2 LINE L2 0 3313 3117 1859 160 0 20 chr12 120390342 120390648 -23395807 - AluJb SINE Alu -12 300 1 183 313 151 32 chr12 120390746 120391123 -23395332 - L2 LINE L2 -601 2713 2292 194 329 157 26 chr12 120391142 120391844 -23394611 - L2 LINE L2 -1736 1578 785 957 147 35 6 chr12 120391895 120392065 -23394390 + FRAM SINE Alu 1 175 -1 1708 154 42 18 chr12 120392133 120392418 -23394037 + AluSx SINE Alu 1 292 -20 263 357 84 29 chr12 120392580 120392818 -23393637 - MIR SINE MIR -3 259 9 2305 104 0 13 chr12 120392849 120393156 -23393299 + AluSx SINE Alu 1 303 -9 2191 120 7 0 chr12 120394288 120394588 -23391867 - AluSq SINE Alu -11 302 1 23 0 0 0 chr12 120394895 120394918 -23391537 + AT_rich Low_complexity Low_complexity 1 23 0 2052 139 0 0 chr12 120394950 120395238 -23391217 - AluSx SINE Alu -24 288 1 377 302 57 19 chr12 120395301 120395460 -23390995 - MIR SINE MIR -90 172 8 1818 175 0 7 chr12 120397459 120397762 -23388693 - AluJb SINE Alu -11 301 1 861 178 0 0 chr12 120397764 120397899 -23388556 - FLAM_C SINE Alu -6 137 3 239 265 96 12 chr12 120398447 120398530 -23387925 - L1MC4 LINE L1 -32 8010 7921 22 35 0 0 chr12 120398544 120398573 -23387882 + AT_rich Low_complexity Low_complexity 1 29 0 2284 174 75 55 chr12 120398670 120398861 -23387594 - L1MC4 LINE L1 -206 7836 7650 1986 130 0 7 chr12 120398861 120399161 -23387294 - AluJb SINE Alu -14 298 1 2284 174 75 55 chr12 120399161 120399475 -23386980 - L1MC4 LINE L1 -392 7650 7321 742 138 49 79 chr12 120399587 120399677 -23386778 - L1MC4a LINE L1 -548 7260 7169 2293 78 0 0 chr12 120399677 120399971 -23386484 - AluY SINE Alu -17 294 1 742 138 49 79 chr12 120399971 120400083 -23386372 - L1MC4a LINE L1 -639 7169 7064 * 1890 173 173 9 chr12 120400081 120400217 -23386238 - L1MA9 LINE L1 0 6312 6200 2078 125 0 0 chr12 120400217 120400513 -23385942 - AluSx SINE Alu -16 296 1 1890 173 173 9 chr12 120400513 120400538 -23385917 - L1MA9 LINE L1 -112 6200 6180 1992 134 0 13 chr12 120400538 120400843 -23385612 - AluSx SINE Alu -11 301 1 1890 173 173 9 chr12 120400843 120401126 -23385329 - L1MA9 LINE L1 -132 6180 5794 1895 104 0 4 chr12 120401126 120401385 -23385070 + AluSx SINE Alu 2 259 -53 448 240 16 0 chr12 120401388 120401517 -23384938 - L1MA9 LINE L1 -993 5153 5023 833 239 173 10 chr12 120401518 120401853 -23384602 - L1MC4 LINE L1 -869 7126 6712 1587 105 231 0 chr12 120401936 120402231 -23384224 + MER47A DNA MER2_type 1 363 -3 2401 169 41 26 chr12 120402249 120402757 -23383698 - L1MD3 LINE L1 -62 7933 7418 1874 158 115 6 chr12 120402757 120403087 -23383368 - MER47A DNA MER2_type 0 366 1 388 250 0 0 chr12 120403103 120403183 -23383272 - MLT1F1 LTR MaLR -442 125 46 3240 192 53 11 chr12 120403205 120403917 -23382538 - L1MC3 LINE L1 -682 7103 6362 2195 93 0 0 chr12 120404056 120404347 -23382108 + AluSx SINE Alu 13 303 -9 362 292 58 17 chr12 120404504 120404624 -23381831 - L2 LINE L2 -2 3311 3187 483 298 29 92 chr12 120404796 120405025 -23381430 - L2 LINE L2 -404 2910 2713 2135 124 0 0 chr12 120405025 120405324 -23381131 + AluSx SINE Alu 1 299 -13 483 298 29 92 chr12 120405324 120405473 -23380982 - L2 LINE L2 -601 2713 2556 896 150 38 0 chr12 120406196 120406356 -23380099 + L1MB1 LINE L1 5991 6156 -12 29 0 0 0 chr12 120406411 120406440 -23380015 + AT_rich Low_complexity Low_complexity 1 29 0 1875 128 13 23 chr12 120406488 120406792 -23379663 - AluSx SINE Alu -10 302 2 1775 139 34 7 chr12 120406822 120407116 -23379339 + AluJo SINE Alu 1 302 -10 2102 116 3 0 chr12 120407116 120407419 -23379036 + AluSx SINE Alu 1 304 -8 2057 130 7 0 chr12 120407747 120408046 -23378409 - AluSx SINE Alu -11 301 1 991 103 6 86 chr12 120408049 120408224 -23378231 - FRAM SINE Alu -16 160 1 1848 125 3 14 chr12 120408506 120408793 -23377662 + AluSx SINE Alu 13 296 -16 198 0 0 0 chr12 120409468 120409490 -23376965 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2092 99 0 3 chr12 120409618 120409924 -23376531 + AluSx SINE Alu 1 305 0 581 176 86 122 chr12 120410182 120410404 -23376051 + MER58C DNA MER1_type 1 214 -1 2111 101 3 0 chr12 120411358 120411646 -23374809 - AluSg SINE Alu -20 290 2 185 305 61 12 chr12 120411658 120411740 -23374715 + L2 LINE L2 3103 3188 -84 249 292 15 0 chr12 120412320 120412385 -23374070 + MIR SINE MIR 31 96 -112 1874 92 64 27 chr12 120412541 120412836 -23373619 + AluSp SINE Alu 3 308 -5 21 0 0 0 chr12 120413295 120413316 -23373139 + AT_rich Low_complexity Low_complexity 1 21 0 486 222 158 63 chr12 120413754 120414101 -23372354 - MLT1H LTR MaLR -16 533 154 423 0 0 0 chr12 120414101 120414148 -23372307 + (ATG)n Simple_repeat Simple_repeat 1 47 0 243 186 17 51 chr12 120414183 120414242 -23372213 - MLT1H LTR MaLR -391 158 102 675 139 8 66 chr12 120417332 120417454 -23369001 + FLAM_A SINE Alu 1 115 -18 345 100 0 0 chr12 120417497 120417547 -23368908 + (CA)n Simple_repeat Simple_repeat 1 50 0 1937 138 0 26 chr12 120417944 120418255 -23368200 + AluSx SINE Alu 1 303 -9 1947 100 0 29 chr12 120419494 120419774 -23366681 - AluSx SINE Alu -40 272 1 1828 153 7 3 chr12 120419783 120420083 -23366372 - AluSx SINE Alu -10 302 2 328 233 147 39 chr12 120420084 120420213 -23366242 - L1M LINE L1 -2389 5419 5277 180 0 0 0 chr12 120420222 120420242 -23366213 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1473 209 0 7 chr12 120420244 120420527 -23365928 - AluJo SINE Alu -31 281 1 245 307 60 67 chr12 120420844 120420994 -23365461 - L2 LINE L2 0 3272 3124 968 144 56 12 chr12 120421129 120421289 -23365166 + THE1C LTR MaLR 1 167 -208 2301 100 0 0 chr12 120421303 120421614 -23364841 + AluSx SINE Alu 1 311 -1 820 154 7 7 chr12 120421840 120421989 -23364466 - AluJo/FRAM SINE Alu -30 282 134 1779 154 0 22 chr12 120421991 120422310 -23364145 - AluSx SINE Alu 0 312 1 346 297 110 7 chr12 120422324 120422469 -23363986 + L2 LINE L2 2626 2785 -529 413 293 68 37 chr12 120422469 120422660 -23363795 - MER20 DNA MER1_type -22 197 1 1806 115 61 0 chr12 120422733 120423011 -23363444 - AluSx SINE Alu -17 295 1 586 238 61 7 chr12 120423023 120423170 -23363285 + L2 LINE L2 3159 3313 0 215 194 15 90 chr12 120423305 120423372 -23363083 - L2 LINE L2 -927 2387 2326 350 289 40 7 chr12 120423373 120423525 -23362930 - LTR33 LTR ERVL 0 521 365 1829 184 44 16 chr12 120423538 120423902 -23362553 - MLT1D LTR MaLR -131 374 1 1775 108 93 0 chr12 120423935 120424194 -23362261 + AluSx SINE Alu 1 283 -29 324 0 0 0 chr12 120424194 120424230 -23362225 + (CA)n Simple_repeat Simple_repeat 1 36 0 319 170 0 0 chr12 120424230 120424277 -23362178 + Alu SINE Alu 237 283 -19 414 0 0 0 chr12 120424277 120424323 -23362132 + (CA)n Simple_repeat Simple_repeat 1 46 0 370 287 75 39 chr12 120424365 120424622 -23361833 - LTR33 LTR ERVL -270 253 15 481 238 163 31 chr12 120424623 120424783 -23361672 + MER5A DNA MER1_type 2 182 -7 1549 154 13 50 chr12 120424807 120425105 -23361350 - AluJo SINE Alu -20 292 6 436 230 128 66 chr12 120425917 120426143 -23360312 + MIR SINE MIR 9 248 -14 216 171 0 0 chr12 120426115 120426150 -23360305 + L2 LINE L2 3266 3300 -13 * 4427 107 139 140 chr12 120426218 120427612 -23358843 - pTR5 LTR ERV1 0 2438 741 432 204 121 21 chr12 120427957 120428102 -23358353 + MIR SINE MIR 31 198 -62 2184 109 0 0 chr12 120428125 120428427 -23358028 - AluSx SINE Alu -10 302 1 1904 124 0 3 chr12 120428429 120428711 -23357744 - AluJo SINE Alu -25 287 7 387 325 59 51 chr12 120428726 120428963 -23357492 + L1ME3 LINE L1 5709 5947 -215 2056 123 0 0 chr12 120428999 120429301 -23357154 + AluSx SINE Alu 3 304 -8 2231 110 0 0 chr12 120429301 120429610 -23356845 + HSMAR2 DNA Mariner 47 355 -947 996 161 0 0 chr12 120429613 120429774 -23356681 + AluSg/x SINE Alu 135 295 -15 6000 106 18 2 chr12 120429774 120430631 -23355824 + HSMAR2 DNA Mariner 345 1214 -88 803 123 0 0 chr12 120430663 120430777 -23355678 + AluJb SINE Alu 191 304 -8 578 103 21 0 chr12 120430777 120430874 -23355581 + HSMAR2 DNA Mariner 1204 1302 0 544 207 9 9 chr12 120430874 120430990 -23355465 - MIR SINE MIR -30 232 117 1366 163 116 48 chr12 120430991 120431328 -23355127 + THE1B LTR MaLR 1 360 -4 1126 184 0 48 chr12 120431463 120431691 -23354764 - MER58B DNA MER1_type -3 338 122 829 165 114 23 chr12 120431691 120431867 -23354588 - AluJb SINE Alu -1 311 120 398 255 10 59 chr12 120431868 120431970 -23354485 - MER58B DNA MER1_type -241 100 4 210 360 99 0 chr12 120431976 120432087 -23354368 + L2 LINE L2 3151 3272 0 344 243 14 0 chr12 120432165 120432239 -23354216 + MER94 DNA DNA 52 126 -8 225 0 0 0 chr12 120432303 120432328 -23354127 + (TG)n Simple_repeat Simple_repeat 2 26 0 868 243 12 0 chr12 120432381 120432554 -23353901 - FAM SINE Alu 0 175 1 232 231 29 87 chr12 120432560 120432664 -23353791 - L1MC4 LINE L1 -20 8022 7925 751 62 25 43 chr12 120432683 120432844 -23353611 + (TCTA)n Simple_repeat Simple_repeat 2 159 0 1910 242 76 14 chr12 120432874 120433424 -23353031 - L1MC4 LINE L1 -170 7872 7289 644 271 88 80 chr12 120433816 120433950 -23352505 + L2 LINE L2 2576 2708 -606 2151 101 3 10 chr12 120433950 120434256 -23352199 + AluSx SINE Alu 1 304 -8 644 271 88 80 chr12 120434256 120434520 -23351935 + L2 LINE L2 2708 2977 -337 1500 299 55 15 chr12 120434558 120435027 -23351428 - MLT1K LTR MaLR -98 490 3 2275 61 0 3 chr12 120435092 120435385 -23351070 - AluY SINE Alu -19 292 1 1942 121 21 0 chr12 120435388 120435678 -23350777 - AluSx SINE Alu -16 296 1 818 198 6 0 chr12 120435802 120435969 -23350486 - FRAM SINE Alu -11 165 1 908 152 0 79 chr12 120435989 120436020 -23350435 - AluJb SINE Alu -148 164 132 2155 114 0 0 chr12 120436020 120436327 -23350128 - AluSx SINE Alu -5 307 1 908 152 0 79 chr12 120436327 120436473 -23349982 - AluJb SINE Alu -180 132 1 26 0 0 0 chr12 120436478 120436504 -23349951 + AT_rich Low_complexity Low_complexity 1 26 0 1665 124 90 11 chr12 120436504 120436771 -23349684 + AluSx SINE Alu 1 288 -24 764 180 7 14 chr12 120436784 120436923 -23349532 + AluJo SINE Alu 2 139 -173 33 0 0 0 chr12 120436997 120437030 -23349425 + AT_rich Low_complexity Low_complexity 1 33 0 283 271 114 36 chr12 120437033 120437173 -23349282 - MIR SINE MIR -56 206 56 362 21 21 0 chr12 120437613 120437660 -23348795 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1365 19 0 0 chr12 120437660 120437815 -23348640 - L1PA3 LINE L1 -18 6137 5983 21 0 0 0 chr12 120438051 120438072 -23348383 + AT_rich Low_complexity Low_complexity 1 21 0 443 263 97 59 chr12 120438320 120438457 -23347998 - MER113 DNA MER1_type? -35 486 339 1647 171 63 30 chr12 120438457 120438819 -23347636 + MLT1A2 LTR MaLR 1 374 0 443 263 97 59 chr12 120438819 120438867 -23347588 - MER113 DNA MER1_type? -182 339 294 2123 113 0 3 chr12 120438920 120439222 -23347233 - AluSx SINE Alu -11 301 1 1017 216 81 8 chr12 120439284 120439520 -23346935 - MIR SINE MIR -7 255 3 21 0 0 0 chr12 120439704 120439725 -23346730 + AT_rich Low_complexity Low_complexity 1 21 0 1077 106 38 12 chr12 120439731 120439891 -23346564 - AluSg/x SINE Alu -27 283 120 1145 85 0 13 chr12 120439931 120440084 -23346371 - AluSq/x SINE Alu -161 151 1 2164 108 0 0 chr12 120440086 120440382 -23346073 - AluSx SINE Alu -16 296 1 778 167 0 0 chr12 120440527 120440653 -23345802 + FRAM SINE Alu 46 171 -5 1526 137 3 94 chr12 120440984 120441160 -23345295 - AluJo SINE Alu -9 303 113 279 0 0 0 chr12 120441160 120441191 -23345264 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2267 67 0 0 chr12 120441191 120441475 -23344980 - AluY SINE Alu -27 284 1 1526 137 3 94 chr12 120441475 120441626 -23344829 - AluJo SINE Alu -197 115 5 330 241 25 10 chr12 120441696 120441902 -23344553 + (CCCTAA)n Simple_repeat Simple_repeat 1 209 0 189 107 0 0 chr12 120441925 120441953 -23344502 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 489 217 42 132 chr12 120441960 120441981 -23344474 - L2 LINE L2 -17 3296 3275 560 278 100 66 chr12 120441981 120442481 -23343974 - LTR33 LTR ERVL -2 519 3 489 217 42 132 chr12 120442481 120442559 -23343896 - L2 LINE L2 -38 3275 3192 1925 113 7 0 chr12 120442559 120442865 -23343590 + AluSx SINE Alu 1 308 0 489 217 42 132 chr12 120442865 120442975 -23343480 - L2 LINE L2 -121 3192 3104 970 200 5 84 chr12 120442986 120443166 -23343289 - MER58A DNA MER1_type -2199 221 59 1702 146 3 27 chr12 120443166 120443461 -23342994 + AluJo SINE Alu 24 311 -1 970 200 5 84 chr12 120443461 120443495 -23342960 - MER58A DNA MER1_type -2361 59 24 403 129 14 0 chr12 120443555 120443625 -23342830 - L2 LINE L2 -246 3067 2997 348 267 23 84 chr12 120443681 120443812 -23342643 - L2 LINE L2 0 3313 3191 1765 152 3 10 chr12 120444359 120444655 -23341800 - AluJo SINE Alu -10 302 9 850 194 51 0 chr12 120444709 120444884 -23341571 - L1MB5 LINE L1 0 6174 5991 1014 84 0 0 chr12 120444972 120445114 -23341341 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 898 190 0 0 chr12 120445114 120445261 -23341194 - FRAM SINE Alu -162 150 1 911 245 72 84 chr12 120445261 120445573 -23340882 + Charlie8 DNA MER1_type 122 429 -1988 2196 66 0 14 chr12 120445573 120445859 -23340596 - AluSg SINE Alu 0 310 29 911 245 72 84 chr12 120445859 120445974 -23340481 + Charlie8 DNA MER1_type 429 544 -1873 429 268 8 55 chr12 120446051 120446178 -23340277 - MIR3 SINE MIR -83 125 5 183 42 0 0 chr12 120446303 120446327 -23340128 + (A)n Simple_repeat Simple_repeat 1 24 0 251 261 22 33 chr12 120446689 120446781 -23339674 + MIR SINE MIR 35 125 -137 1454 263 43 0 chr12 120446781 120447176 -23339279 + LTR16A LTR ERVL 25 436 -14 204 225 155 28 chr12 120447281 120447352 -23339103 - L2 LINE L2 -2 3311 3232 204 305 42 53 chr12 120447374 120447469 -23338986 - MIR SINE MIR -149 113 20 * 608 304 20 36 chr12 120447453 120447700 -23338755 + MIR SINE MIR 20 262 0 1577 188 10 0 chr12 120447799 120448087 -23338368 - AluJb SINE Alu -18 294 4 1212 111 11 0 chr12 120448099 120448279 -23338176 - AluSx SINE Alu -4 308 127 341 333 0 0 chr12 120448305 120448395 -23338060 - L1MC4 LINE L1 -1339 6703 6614 874 121 0 0 chr12 120448404 120448528 -23337927 - AluSx SINE Alu -188 124 1 978 267 98 25 chr12 120448545 120448979 -23337476 - L2 LINE L2 -23 3290 2838 4156 138 9 2 chr12 120448979 120449484 -23336971 + MER41B LTR ERV1 1 513 -122 2171 88 51 0 chr12 120449484 120449780 -23336675 - AluY SINE Alu 0 311 1 4156 138 9 2 chr12 120449780 120449904 -23336551 + MER41B LTR ERV1 513 635 0 978 267 98 25 chr12 120449904 120450060 -23336395 - L2 LINE L2 -475 2838 2695 572 175 5 16 chr12 120450376 120450553 -23335902 + CT-rich Low_complexity Low_complexity 1 175 0 2198 121 3 0 chr12 120450553 120450843 -23335612 - AluSx SINE Alu -21 291 1 204 214 0 0 chr12 120450966 120451022 -23335433 + CT-rich Low_complexity Low_complexity 2 57 0 1228 154 0 5 chr12 120451358 120451546 -23334909 - AluJo SINE Alu -22 290 104 2415 78 3 0 chr12 120451840 120452133 -23334322 - AluSp SINE Alu -19 294 1 1661 247 77 6 chr12 120452341 120452923 -23333532 - MER115 DNA AcHobo -8 685 33 2318 103 3 3 chr12 120453100 120453402 -23333053 + AluSx SINE Alu 1 302 -10 2048 154 0 3 chr12 120453729 120454028 -23332427 - AluJo SINE Alu -14 298 1 793 273 144 16 chr12 120454064 120454500 -23331955 - LTR33 LTR ERVL -20 501 10 527 269 19 71 chr12 120454652 120454864 -23331591 - Charlie8 DNA MER1_type -2195 222 22 2102 134 13 0 chr12 120454940 120455245 -23331210 - AluSx SINE Alu -3 309 1 1035 165 43 101 chr12 120455435 120455593 -23330862 - MLT1D LTR MaLR 0 505 339 2306 97 10 16 chr12 120455593 120455902 -23330553 - AluSx SINE Alu -5 307 1 1035 165 43 101 chr12 120455902 120455961 -23330494 - MLT1D LTR MaLR -166 339 328 3918 106 2 9 chr12 120455961 120456492 -23329963 - MER1A DNA MER1_type 0 527 1 1035 165 43 101 chr12 120456492 120456597 -23329858 - MLT1D LTR MaLR -177 328 219 198 0 0 0 chr12 120456600 120456622 -23329833 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 387 0 0 0 chr12 120456621 120456664 -23329791 + (TG)n Simple_repeat Simple_repeat 2 44 0 870 130 0 0 chr12 120456665 120456780 -23329675 - AluJb SINE Alu -26 286 172 472 169 0 0 chr12 120456790 120456873 -23329582 - MLT1D LTR MaLR -446 180 98 1826 156 0 7 chr12 120456899 120457053 -23329402 - AluJb SINE Alu -38 274 121 201 39 0 0 chr12 120457053 120457079 -23329376 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1826 156 0 7 chr12 120457079 120457200 -23329255 - AluJb SINE Alu -191 121 1 526 128 0 128 chr12 120457204 120457329 -23329126 - MLT1D LTR MaLR -396 109 1 261 355 36 0 chr12 120457352 120457462 -23328993 + MIR SINE MIR 129 242 -20 183 196 65 109 chr12 120457486 120457578 -23328877 + MIR SINE MIR 89 176 -86 504 278 95 69 chr12 120457603 120457872 -23328583 - L2 LINE L2 0 3313 3034 2171 118 47 0 chr12 120457872 120458169 -23328286 + AluSx SINE Alu 1 311 -1 504 278 95 69 chr12 120458169 120458205 -23328250 - L2 LINE L2 -279 3034 3000 191 219 0 62 chr12 120458184 120458248 -23328207 - L2 LINE L2 -546 2768 2709 * 1081 182 5 10 chr12 120458668 120458860 -23327595 + AluSg/x SINE Alu 108 298 -12 2098 139 0 0 chr12 120459195 120459496 -23326959 + AluJb SINE Alu 1 301 -11 360 224 240 16 chr12 120459534 120459659 -23326796 - MIR SINE MIR -62 200 48 216 67 0 0 chr12 120459696 120459726 -23326729 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2842 69 6 0 chr12 120459726 120460090 -23326365 - L1PA7 LINE L1 -11 6143 5778 1583 238 120 48 chr12 120460090 120460831 -23325624 + L2 LINE L2 2517 3311 -2 371 143 196 80 chr12 120460889 120461001 -23325454 - L1M2 LINE L1 -650 5514 5411 1985 148 0 26 chr12 120461476 120461781 -23324674 - AluJb SINE Alu -15 297 1 521 314 0 15 chr12 120461955 120462092 -23324363 - MIR3 SINE MIR -32 176 42 1953 155 0 22 chr12 120462115 120462432 -23324023 + AluJo SINE Alu 1 310 -2 626 194 45 30 chr12 120462484 120462685 -23323770 + MER113 DNA MER1_type? 45 248 -273 750 220 12 0 chr12 120462778 120462946 -23323509 + MER113 DNA MER1_type? 264 433 -88 414 226 108 61 chr12 120463330 120463542 -23322913 + LTR45 LTR ERV1 304 525 0 225 204 19 19 chr12 120463830 120463884 -23322571 + GA-rich Low_complexity Low_complexity 3 56 0 602 237 161 107 chr12 120463915 120464081 -23322374 + MLT1J LTR MaLR 1 157 -354 1944 168 0 3 chr12 120464081 120464384 -23322071 - AluJb SINE Alu -10 302 1 602 237 161 107 chr12 120464384 120464419 -23322036 + MLT1J LTR MaLR 157 189 -322 1789 141 6 48 chr12 120464419 120464731 -23321724 + AluJo SINE Alu 1 299 -13 602 237 161 107 chr12 120464731 120465005 -23321450 + MLT1J LTR MaLR 189 503 -8 252 303 15 0 chr12 120465030 120465096 -23321359 + MIR SINE MIR 30 96 -112 924 144 0 0 chr12 120466501 120466633 -23319822 - FLAM_C SINE Alu -1 132 1 2047 208 44 11 chr12 120466834 120467267 -23319188 + MER41B LTR ERV1 162 608 -27 2119 142 0 0 chr12 120467396 120467691 -23318764 - AluJb SINE Alu -17 295 1 881 203 0 6 chr12 120467697 120467855 -23318600 - FRAM SINE Alu -7 159 3 2788 196 29 24 chr12 120467857 120468480 -23317975 - L1ME3A LINE L1 -2 6168 5543 2071 130 143 11 chr12 120468694 120469072 -23317383 + MSTA LTR MaLR 1 428 0 2368 92 0 16 chr12 120469501 120469805 -23316650 + AluSx SINE Alu 1 299 -13 1028 308 160 23 chr12 120469918 120470202 -23316253 + L2 LINE L2 2383 2627 -686 1774 169 49 0 chr12 120470202 120470486 -23315969 + AluJb SINE Alu 1 298 -14 1028 308 160 23 chr12 120470486 120470518 -23315937 + L2 LINE L2 2627 2653 -660 1408 246 95 39 chr12 120470518 120470982 -23315473 + LTR16C LTR ERVL 2 491 0 1028 308 160 23 chr12 120470982 120471445 -23315010 + L2 LINE L2 2653 3271 -42 220 180 112 67 chr12 120471450 120471539 -23314916 + MER91C DNA MER1_type 26 118 -22 3148 199 48 14 chr12 120472061 120472279 -23314176 - L1ME1 LINE L1 -5 6161 5952 2213 117 7 0 chr12 120472279 120472578 -23313877 + AluSx SINE Alu 1 301 -11 3148 199 48 14 chr12 120472578 120473074 -23313381 - L1ME1 LINE L1 -214 5952 5423 339 44 0 0 chr12 120473075 120473120 -23313335 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1329 112 5 16 chr12 120473123 120473310 -23313145 - AluSg/x SINE Alu -25 285 101 591 209 34 73 chr12 120473311 120473359 -23313096 - L1ME1 LINE L1 -733 5433 5385 1885 155 10 14 chr12 120473359 120473656 -23312799 + AluJb SINE Alu 3 298 -14 591 209 34 73 chr12 120473656 120473784 -23312671 - L1ME1 LINE L1 -781 5385 5264 818 189 0 100 chr12 120473952 120474055 -23312400 - MER5A DNA MER1_type -8 181 104 1842 131 81 34 chr12 120474055 120474413 -23312042 + THE1C LTR MaLR 1 375 0 818 189 0 100 chr12 120474413 120474499 -23311956 - MER5A DNA MER1_type -85 104 11 1588 190 30 17 chr12 120474500 120474795 -23311660 + AluJo SINE Alu 3 301 -11 320 251 49 71 chr12 120475110 120475240 -23311215 + Charlie8 DNA MER1_type 1 128 -2289 1563 133 0 127 chr12 120475240 120475589 -23310866 + AluJb SINE Alu 1 308 0 320 251 49 71 chr12 120475589 120475640 -23310815 + Charlie8 DNA MER1_type 128 179 -2238 337 220 121 21 chr12 120475700 120475841 -23310614 + LTR33 LTR ERVL 349 503 -18 208 308 110 0 chr12 120475934 120476025 -23310430 + MIR SINE MIR 102 202 -60 576 206 48 164 chr12 120476227 120476304 -23310151 - MIR SINE MIR 0 262 178 2312 108 0 0 chr12 120476304 120476601 -23309854 + AluSq SINE Alu 1 297 -16 783 182 0 8 chr12 120476601 120476733 -23309722 - AluJo/FLAM SINE Alu -170 132 2 576 206 48 164 chr12 120476733 120476785 -23309670 - MIR SINE MIR -83 179 123 2255 127 0 0 chr12 120476785 120477092 -23309363 - AluSx SINE Alu -5 307 1 576 206 48 164 chr12 120477092 120477252 -23309203 - MIR SINE MIR -139 123 5 560 286 19 29 chr12 120477436 120477646 -23308809 + MLT1K LTR MaLR 151 358 -230 2164 115 38 0 chr12 120477941 120478228 -23308227 - AluSx SINE Alu -14 298 1 1329 175 33 124 chr12 120478301 120478632 -23307823 + AluJo SINE Alu 2 302 0 1262 167 5 5 chr12 120478832 120479036 -23307419 + AluJb SINE Alu 72 275 -37 212 31 62 0 chr12 120479043 120479075 -23307380 + A-rich Low_complexity Low_complexity 1 34 0 210 246 0 18 chr12 120479244 120479301 -23307154 + GA-rich Low_complexity Low_complexity 4 59 0 1077 67 22 17 chr12 120479570 120479749 -23306706 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 385 66 33 0 chr12 120479749 120479810 -23306645 + (TC)n Simple_repeat Simple_repeat 1 63 0 1686 191 14 0 chr12 120479810 120480093 -23306362 - AluJb SINE Alu -25 287 1 265 300 17 13 chr12 120480130 120480219 -23306236 + MIR SINE MIR 37 127 -81 890 160 0 14 chr12 120480219 120480363 -23306092 - AluJo SINE Alu -170 142 1 237 289 22 22 chr12 120480366 120480456 -23305999 - Charlie8 DNA MER1_type -2301 116 27 391 214 34 11 chr12 120480578 120480667 -23305788 - MIR SINE MIR -1 261 171 250 284 46 9 chr12 120480863 120480972 -23305483 - L2 LINE L2 -338 2975 2863 266 242 11 34 chr12 120481020 120481328 -23305127 + G-rich Low_complexity Low_complexity 1 300 0 339 170 7 37 chr12 120481332 120481467 -23304988 + GA-rich Low_complexity Low_complexity 1 131 0 221 259 0 32 chr12 120481528 120481713 -23304742 + GA-rich Low_complexity Low_complexity 1 179 0 259 329 0 0 chr12 120481732 120481817 -23304638 + G-rich Low_complexity Low_complexity 3 87 0 282 251 0 16 chr12 120481818 120482001 -23304454 + GA-rich Low_complexity Low_complexity 1 180 0 350 179 5 49 chr12 120482022 120482206 -23304249 + GA-rich Low_complexity Low_complexity 1 176 0 206 269 0 0 chr12 120482396 120482448 -23304007 + (CGG)n Simple_repeat Simple_repeat 3 54 0 735 284 67 8 chr12 120483165 120483404 -23303051 - MIR SINE MIR -8 254 2 1491 103 0 5 chr12 120483478 120483673 -23302782 - AluSx SINE Alu -118 194 1 994 111 7 0 chr12 120483674 120483809 -23302646 - AluSq/x SINE Alu -176 136 1 26 50 0 0 chr12 120483987 120484027 -23302428 + AT_rich Low_complexity Low_complexity 1 40 0 1074 164 0 27 chr12 120484048 120484214 -23302241 - AluJ SINE Alu 0 312 150 4508 112 5 2 chr12 120484214 120484847 -23301608 - MER41B LTR ERV1 0 635 1 1074 164 0 27 chr12 120484847 120484863 -23301592 - AluJ SINE Alu -162 150 135 900 158 0 0 chr12 120484864 120484997 -23301458 - AluJ SINE Alu -169 133 1 229 217 14 0 chr12 120485567 120485636 -23300819 + A-rich Low_complexity Low_complexity 1 70 0 504 272 53 77 chr12 120485873 120486119 -23300336 - MER102a DNA MER1_type -2 328 89 294 306 97 8 chr12 120486747 120486871 -23299584 - HAL1 LINE L1 -10 2497 2363 1145 158 0 11 chr12 120486871 120487054 -23299401 - AluJb SINE Alu -1 311 131 206 333 10 21 chr12 120487152 120487248 -23299207 - L2 LINE L2 -4 3268 3174 339 303 0 8 chr12 120487249 120487381 -23299074 + CT-rich Low_complexity Low_complexity 2 132 0 2694 35 0 10 chr12 120487549 120487860 -23298595 - AluY SINE Alu -3 308 1 2564 86 51 11 chr12 120488280 120488630 -23297825 - THE1B LTR MaLR 0 364 1 765 124 0 0 chr12 120488736 120488841 -23297614 - AluJb SINE Alu -194 118 14 590 283 23 12 chr12 120488939 120489112 -23297343 + MIR3 SINE MIR 23 197 -11 307 212 144 27 chr12 120489149 120489295 -23297160 - L1ME4a LINE L1 -2 6119 5957 812 250 0 0 chr12 120489402 120489566 -23296889 - FRAM SINE Alu -14 162 1 1942 127 0 52 chr12 120489612 120489903 -23296552 - AluJb SINE Alu -23 289 14 286 323 42 0 chr12 120489911 120490078 -23296377 - L1ME4a LINE L1 -295 5826 5653 535 261 155 26 chr12 120490372 120490598 -23295857 - MIR SINE MIR 0 262 8 430 333 5 59 chr12 120490738 120490857 -23295598 + MIR3 SINE MIR 32 139 -69 2155 134 0 3 chr12 120490857 120491155 -23295300 + AluSx SINE Alu 1 297 -15 430 333 5 59 chr12 120491155 120491221 -23295234 + MIR3 SINE MIR 139 207 -1 1801 163 54 36 chr12 120491970 120492489 -23293966 - MLT2A2 LTR ERVL 0 554 24 2332 101 0 7 chr12 120492608 120492905 -23293550 + AluSx SINE Alu 2 296 -16 378 296 69 38 chr12 120493019 120493178 -23293277 - MER5A DNA MER1_type -1 188 25 771 314 111 19 chr12 120493344 120493768 -23292687 - L2 LINE L2 -18 3295 2833 572 284 97 6 chr12 120493853 120494029 -23292426 - MIR SINE MIR -70 192 1 319 252 55 8 chr12 120494365 120494492 -23291963 + L1M4 LINE L1 2884 3016 -3130 669 232 39 61 chr12 120494513 120494694 -23291761 + MIR SINE MIR 3 179 -83 444 287 313 7 chr12 120494673 120494973 -23291482 + L2 LINE L2 2922 3313 0 * 190 333 15 0 chr12 120495000 120495066 -23291389 + MIR SINE MIR 188 254 -8 247 204 0 0 chr12 120495280 120495329 -23291126 + L2 LINE L2 3265 3313 0 2549 105 22 14 chr12 120495387 120495748 -23290707 - THE1B LTR MaLR 0 364 1 482 278 51 104 chr12 120495900 120496331 -23290124 - L2 LINE L2 -51 3221 2814 1154 248 146 27 chr12 120496547 120496951 -23289504 + L2 LINE L2 2857 3308 -5 2297 128 0 0 chr12 120496963 120497267 -23289188 + AluSx SINE Alu 9 312 0 358 333 58 14 chr12 120497274 120497481 -23288974 - MIR SINE MIR -35 227 12 194 302 63 0 chr12 120497507 120497570 -23288885 + MIR SINE MIR 51 117 -91 307 261 161 6 chr12 120497797 120497958 -23288497 + MER102b DNA MER1_type 31 216 -125 1384 166 45 79 chr12 120497980 120498270 -23288185 - AluJo SINE Alu -30 282 3 1234 169 137 24 chr12 120498290 120498538 -23287917 - AluJo SINE Alu -30 282 7 225 214 135 11 chr12 120498562 120498651 -23287804 + MER102b DNA MER1_type 242 341 0 1231 146 19 5 chr12 120499043 120499249 -23287206 + MER2 DNA MER2_type 1 209 -136 996 149 0 0 chr12 120499249 120499390 -23287065 + AluJb SINE Alu 1 141 -171 23 54 0 0 chr12 120499409 120499446 -23287009 + AT_rich Low_complexity Low_complexity 1 37 0 2096 134 13 0 chr12 120499474 120499773 -23286682 - AluSx SINE Alu -9 303 1 420 203 0 0 chr12 120499782 120499861 -23286594 + MER2 DNA MER2_type 267 345 0 545 287 77 35 chr12 120499948 120500142 -23286313 + MLT1I LTR MaLR 82 288 -121 1654 203 28 25 chr12 120500142 120500506 -23285949 + MLT1A1 LTR MaLR 1 365 0 545 287 77 35 chr12 120500506 120500634 -23285821 + MLT1I LTR MaLR 288 409 0 209 286 65 13 chr12 120500857 120500934 -23285521 - MIR SINE MIR -104 158 78 686 327 70 44 chr12 120500958 120501230 -23285225 + L2 LINE L2 2993 3271 -1 427 368 49 0 chr12 120501233 120501396 -23285059 + MIR3 SINE MIR 38 208 0 319 273 0 0 chr12 120501473 120501539 -23284916 - MIR SINE MIR -184 78 13 235 200 12 12 chr12 120501591 120501676 -23284779 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 413 293 16 8 chr12 120501701 120501824 -23284631 - L2 LINE L2 0 3313 3190 256 279 16 0 chr12 120501986 120502047 -23284408 - L2 LINE L2 0 3272 3211 995 255 29 8 chr12 120502164 120502407 -23284048 + MIR SINE MIR 1 248 -14 1219 226 69 14 chr12 120502610 120502959 -23283496 + LTR52 LTR ERVL 17 384 -37 1335 181 0 18 chr12 120503294 120503520 -23282935 - AluJo SINE Alu -10 302 81 1554 251 38 44 chr12 120503525 120504181 -23282274 - L1M4 LINE L1 -1156 4990 4339 1412 182 44 69 chr12 120504455 120504773 -23281682 + AluJb SINE Alu 1 310 -2 520 152 11 11 chr12 120505152 120505244 -23281211 - LTR16C LTR ERVL -4 487 396 312 276 13 0 chr12 120505811 120505887 -23280568 + MIR SINE MIR 176 252 -10 21 0 0 0 chr12 120506605 120506626 -23279829 + AT_rich Low_complexity Low_complexity 1 21 0 489 340 37 5 chr12 120507035 120507226 -23279229 + MIR SINE MIR 66 262 0 353 234 48 48 chr12 120507571 120507718 -23278737 + MIR SINE MIR 16 145 -63 1487 123 4 0 chr12 120507720 120507948 -23278507 - THE1C-int LTR MaLR -1351 229 1 2251 110 55 27 chr12 120507948 120508313 -23278142 - THE1C LTR MaLR 0 375 1 225 289 56 33 chr12 120508316 120508406 -23278049 + MIR SINE MIR 171 262 0 243 307 134 22 chr12 120508574 120508753 -23277702 + L1ME3A LINE L1 5746 5944 -226 2057 134 0 29 chr12 120508804 120509110 -23277345 + AluJb SINE Alu 1 297 -15 1078 151 12 17 chr12 120509790 120509962 -23276493 + FRAM SINE Alu 1 164 -12 1244 210 75 39 chr12 120509981 120510431 -23276024 - MER39 LTR ERV1 -5 537 10 3055 164 30 9 chr12 120510463 120511004 -23275451 - MER41C LTR ERV1 -2 552 1 440 258 8 31 chr12 120511252 120511380 -23275075 - MIR SINE MIR -131 131 7 236 232 205 18 chr12 120511584 120511696 -23274759 - MIR SINE MIR -6 256 124 1970 207 106 48 chr12 120511707 120512243 -23274212 - MLT1F1 LTR MaLR 0 567 1 2071 138 0 28 chr12 120512247 120512528 -23273927 + AluSx SINE Alu 1 273 -39 239 0 32 0 chr12 120512528 120512559 -23273896 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2071 138 0 28 chr12 120512559 120512597 -23273858 + AluSx SINE Alu 273 311 -1 232 311 78 11 chr12 120512627 120512717 -23273738 - MIR SINE MIR -150 112 17 575 288 16 52 chr12 120513417 120513460 -23272995 + MIR SINE MIR 61 104 -158 2043 106 134 53 chr12 120513460 120513531 -23272924 - MSTA LTR MaLR 0 428 364 1574 136 33 0 chr12 120513531 120513774 -23272681 - AluSx SINE Alu 0 312 62 2043 106 134 53 chr12 120513774 120514098 -23272357 - MSTA LTR MaLR -64 364 1 575 288 16 52 chr12 120514098 120514245 -23272210 + MIR SINE MIR 104 244 -18 389 313 47 0 chr12 120514296 120514424 -23272031 + MIR3 SINE MIR 74 207 -1 2256 111 3 0 chr12 120515264 120515570 -23270885 - AluSq SINE Alu -6 307 1 202 261 0 0 chr12 120515583 120515629 -23270826 + L2 LINE L2 3263 3308 -5 652 219 53 21 chr12 120515890 120516077 -23270378 - Charlie5 DNA MER1_type -178 2434 2242 435 246 0 33 chr12 120516094 120516216 -23270239 - Charlie5 DNA MER1_type -2492 120 3 806 213 27 0 chr12 120516347 120516497 -23269958 - AluJo SINE Alu -133 179 26 362 304 200 45 chr12 120516499 120516874 -23269581 + L2 LINE L2 2821 3253 -19 815 258 124 75 chr12 120517094 120517380 -23269075 + L2 LINE L2 2727 2997 -316 2273 117 0 0 chr12 120517380 120517680 -23268775 + AluSx SINE Alu 6 305 -7 815 258 124 75 chr12 120517680 120517776 -23268679 + L2 LINE L2 2997 3087 -226 2247 110 0 16 chr12 120517776 120518086 -23268369 - AluY SINE Alu -2 309 5 815 258 124 75 chr12 120518086 120518264 -23268191 + L2 LINE L2 3087 3312 -1 292 163 0 0 chr12 120518433 120518482 -23267973 - L1ME1 LINE L1 -57 6109 6061 1902 112 0 27 chr12 120518641 120518900 -23267555 - AluSx SINE Alu -60 252 1 2120 139 0 34 chr12 120519707 120520030 -23266425 - AluJb SINE Alu 0 312 1 708 315 22 9 chr12 120520167 120520399 -23266056 - MIR SINE MIR -1 261 27 250 257 40 27 chr12 120520502 120520576 -23265879 + MIR SINE MIR 7 81 -181 2144 150 42 99 chr12 120520576 120520808 -23265647 + MLT1D LTR MaLR 1 245 -260 1579 186 13 39 chr12 120520808 120521114 -23265341 + AluJo SINE Alu 1 298 -14 2144 150 42 99 chr12 120521114 120521408 -23265047 + MLT1D LTR MaLR 245 497 -8 509 248 22 22 chr12 120521414 120521551 -23264904 + MIR SINE MIR 76 212 -50 2001 142 6 22 chr12 120521556 120521872 -23264583 + AluJb SINE Alu 1 311 -1 822 181 0 0 chr12 120521945 120522083 -23264372 - FRAM SINE Alu -18 158 21 243 270 45 22 chr12 120522246 120522335 -23264120 + L2 LINE L2 3221 3311 -2 527 219 207 24 chr12 120522904 120523073 -23263382 + MIR SINE MIR 48 247 -15 2428 90 0 0 chr12 120523294 120523595 -23262860 - AluSx SINE Alu -5 307 7 368 282 0 12 chr12 120523772 120523857 -23262598 - MIR SINE MIR -83 125 42 249 108 0 0 chr12 120524595 120524632 -23261823 + (CTCA)n Simple_repeat Simple_repeat 4 40 0 196 211 175 18 chr12 120524792 120524849 -23261606 - L2 LINE L2 -188 3084 3019 1141 151 11 5 chr12 120524849 120525034 -23261421 - AluJ SINE Alu -7 305 120 502 314 29 25 chr12 120525758 120525844 -23260611 - L1MC4a LINE L1 -1849 5959 5875 3710 171 30 19 chr12 120525844 120526401 -23260054 - L1MB8 LINE L1 -6 6172 5623 477 0 0 0 chr12 120526401 120526454 -23260001 + (TG)n Simple_repeat Simple_repeat 2 54 0 2198 109 11 0 chr12 120526454 120526737 -23259718 - AluSq SINE Alu -27 286 1 3710 171 30 19 chr12 120526737 120526922 -23259533 - L1MB8 LINE L1 -554 5624 5421 502 314 29 25 chr12 120526922 120527039 -23259416 - L1MC4a LINE L1 -1933 5875 5755 736 288 137 17 chr12 120527042 120527386 -23259069 - MLT1K LTR MaLR 0 588 204 1388 235 69 81 chr12 120527555 120528108 -23258347 + L2 LINE L2 2007 2607 -707 871 174 0 0 chr12 120528165 120528297 -23258158 - AluJ SINE Alu -170 132 1 41942 28 22 2 chr12 120528352 120534383 -23252072 + L1PA2 LINE L1 4 6155 0 208 240 28 56 chr12 120534386 120534565 -23251890 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 * 285 213 26 58 chr12 120534504 120534659 -23251796 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 729 226 102 65 chr12 120534694 120534944 -23251511 - L2 LINE L2 -17 3296 3034 2219 126 121 23 chr12 120534944 120535332 -23251123 - MSTA LTR MaLR -2 426 1 729 226 102 65 chr12 120535332 120535356 -23251099 - L2 LINE L2 -279 3034 3012 669 262 13 56 chr12 120536576 120536809 -23249646 - MIR SINE MIR 0 262 40 * 788 277 9 24 chr12 120536789 120537002 -23249453 + MIR SINE MIR 50 259 -3 1724 114 80 48 chr12 120537624 120537913 -23248542 - AluSq SINE Alu -15 298 1 323 276 23 11 chr12 120538600 120538687 -23247768 + MIR SINE MIR 163 250 -12 855 252 32 21 chr12 120538806 120539051 -23247404 + MIR SINE MIR 11 261 -1 525 261 43 0 chr12 120539470 120539608 -23246847 - MER63A DNA MER1_type -4 206 63 1968 149 3 7 chr12 120539791 120540087 -23246368 + AluJo SINE Alu 1 295 -17 857 144 0 0 chr12 120540089 120540207 -23246248 + FLAM_C SINE Alu 1 118 -15 2085 147 7 0 chr12 120540241 120540547 -23245908 + AluSx SINE Alu 1 308 -4 380 288 79 40 chr12 120540594 120540771 -23245684 + L1ME4a LINE L1 5769 5952 -169 304 309 48 67 chr12 120540774 120540939 -23245516 - L2 LINE L2 -2 3270 3109 569 121 0 0 chr12 120541023 120541106 -23245349 - AluS SINE Alu -6 304 222 * 672 170 27 82 chr12 120541100 120541247 -23245208 - AluSg/x SINE Alu -40 272 134 2339 112 0 10 chr12 120541247 120541561 -23244894 - AluSx SINE Alu -1 311 1 336 182 168 40 chr12 120541760 120541887 -23244568 - MIR3 SINE MIR -37 171 37 2124 226 109 54 chr12 120542356 120542503 -23243952 - L2 LINE L2 -24 3289 3151 2102 100 18 11 chr12 120542503 120542784 -23243671 + AluSx SINE Alu 1 283 -29 2124 226 109 54 chr12 120542784 120543649 -23242806 - L2 LINE L2 -162 3151 2207 423 290 4 10 chr12 120543730 120543876 -23242579 - MIR SINE MIR -63 145 4 200 244 16 18 chr12 120543935 120543997 -23242458 - MIR SINE MIR -60 148 93 248 222 37 25 chr12 120544077 120544158 -23242297 - MER103 DNA DNA -62 104 23 239 291 0 29 chr12 120544280 120544383 -23242072 + (TGAA)n Simple_repeat Simple_repeat 1 100 0 674 237 119 20 chr12 120544417 120544670 -23241785 - L2 LINE L2 0 3313 3036 2263 111 3 0 chr12 120544742 120545039 -23241416 + AluSx SINE Alu 3 300 -12 847 133 0 15 chr12 120545043 120545178 -23241277 + FLAM_C SINE Alu 1 133 0 255 270 0 0 chr12 120545224 120545398 -23241057 + (TGAA)n Simple_repeat Simple_repeat 2 175 0 23 33 0 0 chr12 120546213 120546243 -23240212 + GC_rich Low_complexity Low_complexity 1 30 0 216 244 0 26 chr12 120546361 120546439 -23240016 + (CCG)n Simple_repeat Simple_repeat 2 77 0 49 66 0 0 chr12 120546506 120546597 -23239858 + GC_rich Low_complexity Low_complexity 1 91 0 526 283 118 21 chr12 120546782 120546969 -23239486 - MIR SINE MIR 0 262 58 267 314 89 24 chr12 120547130 120547254 -23239201 - MIR3 SINE MIR -52 156 25 220 359 22 0 chr12 120547893 120547985 -23238470 - MIR3 SINE MIR -10 198 105 394 184 0 120 chr12 120548033 120548072 -23238383 + MIR SINE MIR 35 77 -185 1949 148 37 0 chr12 120548072 120548247 -23238208 - AluSx SINE Alu -4 308 116 333 0 0 0 chr12 120548247 120548284 -23238171 + (TG)n Simple_repeat Simple_repeat 2 38 0 1949 148 37 0 chr12 120548284 120548405 -23238050 - AluSx SINE Alu -196 116 1 394 184 0 120 chr12 120548405 120548490 -23237965 + MIR SINE MIR 77 144 -118 453 36 0 0 chr12 120549128 120549183 -23237272 + (GAATG)n Simple_repeat Simple_repeat 3 57 0 1926 149 7 3 chr12 120549251 120549546 -23236909 + AluJo SINE Alu 3 298 -14 1862 104 56 0 chr12 120549651 120549902 -23236553 + AluSx SINE Alu 35 299 -13 249 282 95 93 chr12 120549975 120550397 -23236058 - L2 LINE L2 -42 3230 2814 1831 142 3 19 chr12 120551140 120551457 -23234998 - AluJo SINE Alu 0 312 1 2340 124 45 16 chr12 120551477 120551856 -23234599 - MLT1B LTR MaLR 0 390 1 2059 117 7 0 chr12 120551895 120552185 -23234270 - AluSx SINE Alu -20 292 1 273 106 0 0 chr12 120552187 120552234 -23234221 + MADE1 DNA Mariner 29 75 -5 299 310 14 7 chr12 120552240 120552385 -23234070 + CT-rich Low_complexity Low_complexity 1 146 0 285 286 9 38 chr12 120552409 120552514 -23233941 + MIR SINE MIR 69 170 -92 233 277 8 76 chr12 120552558 120552677 -23233778 - MIR3 SINE MIR -32 176 66 602 237 29 23 chr12 120552904 120552949 -23233506 - MIR SINE MIR -12 250 207 1950 136 7 3 chr12 120552949 120553244 -23233211 - AluJo SINE Alu -16 296 1 602 237 29 23 chr12 120553244 120553371 -23233084 - MIR SINE MIR -55 207 77 268 264 28 37 chr12 120553442 120553549 -23232906 + MIR SINE MIR 50 154 -63 1974 128 3 3 chr12 120553613 120553909 -23232546 - AluSx SINE Alu -16 296 1 249 322 26 20 chr12 120554037 120554189 -23232266 - L1P LINE L1 -749 5397 5245 1182 216 139 26 chr12 120554252 120554547 -23231908 - L2 LINE L2 0 3313 3053 1845 152 30 0 chr12 120554547 120554844 -23231611 + AluJb SINE Alu 3 308 -4 1182 216 139 26 chr12 120554844 120555157 -23231298 - L2 LINE L2 -260 3053 2633 214 278 19 0 chr12 120555832 120555886 -23230569 - MIR SINE MIR -118 144 90 452 287 0 0 chr12 120556673 120556781 -23229674 + MIR SINE MIR 37 144 -64 826 233 21 5 chr12 120556781 120556970 -23229485 + MER117 DNA MER1_type 6 197 0 969 111 83 33 chr12 120556996 120557177 -23229278 + L1PA6 LINE L1 5961 6150 -4 215 188 31 47 chr12 120557178 120557242 -23229213 - L2 LINE L2 -158 3155 3093 291 254 16 0 chr12 120557687 120557750 -23228705 + MIR SINE MIR 28 91 -171 1305 209 0 27 chr12 120557763 120558059 -23228396 - AluSq SINE Alu -12 301 14 335 272 25 31 chr12 120558105 120558267 -23228188 + (CCA)n Simple_repeat Simple_repeat 2 162 0 553 254 107 73 chr12 120558285 120558490 -23227965 + MIR SINE MIR 2 213 -49 500 225 133 6 chr12 120558506 120558679 -23227776 - MIR SINE MIR -27 235 41 500 225 133 6 chr12 120561564 120561737 -23224718 + MIR SINE MIR 41 235 -27 540 259 107 73 chr12 120561753 120561958 -23224497 - MIR SINE MIR -49 213 2 437 265 27 24 chr12 120561975 120562274 -23224181 + (TGG)n Simple_repeat Simple_repeat 1 300 0 247 226 36 24 chr12 120562355 120562439 -23224016 + (ATGGTG)n Simple_repeat Simple_repeat 5 89 0 1156 181 15 0 chr12 120562723 120562928 -23223527 - MER3 DNA MER1_type 0 209 2 624 288 111 36 chr12 120563155 120563628 -23222827 - L2 LINE L2 0 3272 2763 247 292 157 0 chr12 120564442 120564531 -23221924 + MIR SINE MIR 75 177 -85 199 351 26 0 chr12 120564557 120564634 -23221821 - L2 LINE L2 -5 3267 3189 1971 123 3 16 chr12 120564648 120564957 -23221498 - AluSx SINE Alu -7 305 1 348 24 0 0 chr12 120564981 120565022 -23221433 + (CA)n Simple_repeat Simple_repeat 1 41 0 1511 209 55 6 chr12 120565180 120565505 -23220950 - MER58B DNA MER1_type 0 341 1 312 218 81 0 chr12 120566827 120566914 -23219541 - MIR SINE MIR -72 136 43 760 202 10 66 chr12 120567541 120567739 -23218716 + MIR SINE MIR 57 243 -19 190 323 108 11 chr12 120568216 120568309 -23218146 - MIR SINE MIR -62 146 45 222 169 46 0 chr12 120568436 120568501 -23217954 + CT-rich Low_complexity Low_complexity 2 69 0 203 313 6 44 chr12 120568555 120568737 -23217718 + G-rich Low_complexity Low_complexity 5 179 0 2226 101 3 0 chr12 120569195 120569493 -23216962 + AluSx SINE Alu 1 299 -13 292 278 0 74 chr12 120569508 120569616 -23216839 + MIR SINE MIR 79 178 -84 479 262 33 0 chr12 120569620 120569742 -23216713 - L2 LINE L2 0 3313 3188 264 289 124 0 chr12 120570327 120570424 -23216031 + MIR SINE MIR 30 138 -70 251 300 0 0 chr12 120570424 120570484 -23215971 - Charlie8 DNA MER1_type 0 2417 2358 238 184 0 0 chr12 120570521 120570559 -23215896 + L2 LINE L2 3262 3299 -14 256 256 70 91 chr12 120570567 120570707 -23215748 - Charlie8 DNA MER1_type -2192 225 88 1619 163 0 25 chr12 120570707 120571010 -23215445 + AluJb SINE Alu 11 306 0 256 256 70 91 chr12 120571010 120571067 -23215388 - Charlie8 DNA MER1_type -2329 88 31 183 80 0 0 chr12 120571133 120571158 -23215297 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 694 342 104 18 chr12 120571326 120571847 -23214608 - L2 LINE L2 -181 3091 2532 317 231 31 176 chr12 120571836 120572091 -23214364 + MIR SINE MIR 44 261 -1 * 384 291 91 33 chr12 120572575 120572785 -23213670 + MIR SINE MIR 33 254 -8 195 273 273 0 chr12 120572872 120572949 -23213506 + MIR SINE MIR 47 144 -118 286 329 68 2 chr12 120572956 120573114 -23213341 + MIR SINE MIR 11 176 -62 215 279 82 0 chr12 120573650 120573711 -23212744 + L3 LINE CR1 1425 1490 -87 637 271 0 0 chr12 120573799 120573950 -23212505 + MIR SINE MIR 104 254 -8 215 365 66 47 chr12 120575152 120575426 -23211029 - L2 LINE L2 -30 3242 2964 477 263 23 23 chr12 120575465 120575598 -23210857 - MIR SINE MIR -13 249 117 2281 102 0 9 chr12 120575639 120575954 -23210501 - AluSx SINE Alu 0 312 1 306 197 179 34 chr12 120576156 120576273 -23210182 - MIR3 SINE MIR -38 170 37 2022 233 115 44 chr12 120576740 120576887 -23209568 - L2 LINE L2 -24 3289 3154 1976 100 18 11 chr12 120576887 120577168 -23209287 + AluSx SINE Alu 1 283 -29 2022 233 115 44 chr12 120577168 120578024 -23208431 - L2 LINE L2 -159 3154 2207 414 290 4 10 chr12 120578105 120578251 -23208204 - MIR SINE MIR -63 145 4 192 244 16 18 chr12 120578310 120578372 -23208083 - MIR SINE MIR -60 148 93 275 222 37 25 chr12 120578452 120578533 -23207922 - MER103 DNA DNA -62 104 23 239 291 0 29 chr12 120578655 120578758 -23207697 + (TGAA)n Simple_repeat Simple_repeat 1 100 0 639 237 119 20 chr12 120578792 120579045 -23207410 - L2 LINE L2 0 3313 3036 2171 107 3 0 chr12 120579117 120579416 -23207039 + AluSx SINE Alu 3 302 -10 848 133 0 15 chr12 120579420 120579555 -23206900 + FLAM_C SINE Alu 1 133 0 264 244 0 0 chr12 120579585 120579712 -23206743 + (TGAA)n Simple_repeat Simple_repeat 2 128 0 439 216 49 0 chr12 120579887 120579989 -23206466 + FLAM_A SINE Alu 10 116 -26 2029 128 0 0 chr12 120580025 120580307 -23206148 - AluSx SINE Alu -30 282 1 871 161 0 0 chr12 120580310 120580453 -23206002 - FLAM_C SINE Alu 0 143 1 1501 176 28 3 chr12 120580493 120580777 -23205678 + AluJo SINE Alu 4 294 -18 224 290 131 17 chr12 120580781 120580957 -23205498 + L2 LINE L2 2770 2965 -349 1163 149 43 24 chr12 120580957 120581165 -23205290 + MER58A DNA MER1_type 1 212 -12 1824 140 10 27 chr12 120581167 120581467 -23204988 + AluSx SINE Alu 1 295 -17 194 360 12 0 chr12 120581471 120581557 -23204898 + L2 LINE L2 2943 3029 -284 188 211 58 39 chr12 120581700 120581752 -23204703 + L2 LINE L2 3261 3313 0 1275 114 16 0 chr12 120581779 120581972 -23204483 + AluSq SINE Alu 1 196 -117 240 158 0 0 chr12 120582075 120582113 -23204342 + Alu SINE Alu 261 298 -10 299 325 125 8 chr12 120582246 120582366 -23204089 - MIR3 SINE MIR -69 139 6 205 306 112 31 chr12 120583112 120583210 -23203245 - L2 LINE L2 -5 3308 3203 1055 255 116 25 chr12 120583515 120583868 -23202587 + MLT1J LTR MaLR 111 495 -16 1878 144 7 0 chr12 120583989 120584280 -23202175 - AluJb SINE Alu -14 298 6 2066 108 13 13 chr12 120584715 120585020 -23201435 - AluSq SINE Alu -8 305 1 387 60 0 0 chr12 120585729 120585779 -23200676 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 293 52 0 chr12 120585819 120585877 -23200578 + L2 LINE L2 3251 3311 -2 636 296 10 20 chr12 120586374 120586577 -23199878 + MIR SINE MIR 60 260 -2 324 286 77 0 chr12 120586908 120586999 -23199456 + L2 LINE L2 3201 3298 -15 2123 125 0 0 chr12 120587057 120587352 -23199103 + AluSx SINE Alu 1 295 -17 2096 113 3 3 chr12 120587453 120587754 -23198701 + AluSq SINE Alu 13 313 0 1980 134 0 16 chr12 120588951 120589265 -23197190 + AluJb SINE Alu 1 309 -3 3111 135 22 26 chr12 120589368 120589472 -23196983 + LTR10C LTR ERV1 41 144 -447 2720 12 0 22 chr12 120589472 120589793 -23196662 + AluYb8 SINE Alu 1 314 -4 2330 72 3 13 chr12 120589799 120590105 -23196350 + AluY SINE Alu 1 303 -8 3111 135 22 26 chr12 120590105 120590528 -23195927 + LTR10C LTR ERV1 149 573 -18 603 161 0 0 chr12 120590539 120590632 -23195823 + AluSg/x SINE Alu 201 293 -17 1892 156 0 0 chr12 120590642 120590931 -23195524 + AluJo SINE Alu 1 289 -23 1947 111 0 0 chr12 120590960 120591222 -23195233 + AluSx SINE Alu 31 292 -20 420 311 258 4 chr12 120592378 120592638 -23193817 - LTR33A LTR ERVL -59 464 139 1895 123 55 0 chr12 120592786 120593078 -23193377 - AluSg SINE Alu -2 308 1 1355 125 10 87 chr12 120593149 120593286 -23193169 + L1MD3 LINE L1 7729 7834 -161 1493 172 30 0 chr12 120593286 120593548 -23192907 - AluJo SINE Alu -42 270 1 1355 125 10 87 chr12 120593548 120593698 -23192757 + L1MD3 LINE L1 7834 7994 -1 1709 161 6 38 chr12 120593708 120594025 -23192430 + AluSx SINE Alu 1 307 -5 295 336 144 8 chr12 120594079 120594204 -23192251 + MIR SINE MIR 6 147 -115 940 136 0 0 chr12 120594344 120594476 -23191979 + FLAM_C SINE Alu 1 132 -1 242 268 78 73 chr12 120594538 120594717 -23191738 + L2 LINE L2 3035 3214 -99 221 243 42 122 chr12 120594762 120594951 -23191504 - L2 LINE L2 -815 2499 2326 1057 130 0 30 chr12 120594994 120595163 -23191292 - AluJo SINE Alu -60 252 89 1700 146 18 14 chr12 120595649 120595930 -23190525 + AluJb SINE Alu 1 282 -30 2056 123 7 0 chr12 120595933 120596234 -23190221 - AluSq SINE Alu -10 303 1 252 0 0 0 chr12 120597042 120597070 -23189385 + (A)n Simple_repeat Simple_repeat 1 28 0 1063 90 6 19 chr12 120597104 120597260 -23189195 - L1PA15 LINE L1 0 6165 6012 838 205 27 27 chr12 120597304 120597489 -23188966 - MIR SINE MIR -15 247 63 2035 112 51 0 chr12 120597542 120597838 -23188617 + AluSx SINE Alu 1 311 -1 391 237 0 0 chr12 120597839 120597915 -23188540 - AluJo/FLAM SINE Alu -190 112 37 2161 113 10 6 chr12 120598092 120598403 -23188052 + AluSx SINE Alu 1 312 0 265 244 13 48 chr12 120598988 120599074 -23187381 + MIR SINE MIR 71 152 -65 367 242 11 22 chr12 120599078 120599178 -23187277 + MIR SINE MIR 47 145 -63 5617 118 24 33 chr12 120599664 120600575 -23185880 + L1MC1 LINE L1 5422 6324 -9 1925 115 0 65 chr12 120600649 120600971 -23185484 + AluSx SINE Alu 1 301 -11 596 214 61 73 chr12 120601194 120601387 -23185068 - L1MB8 LINE L1 0 6178 5984 1995 146 0 0 chr12 120601387 120601695 -23184760 - AluSx SINE Alu -4 308 1 596 214 61 73 chr12 120601695 120601781 -23184674 - L1MB8 LINE L1 -194 5984 5898 1230 198 14 5 chr12 120601781 120601998 -23184457 + MER20 DNA MER1_type 1 219 0 2277 68 0 26 chr12 120602001 120602308 -23184147 - AluSp SINE Alu -14 299 1 1651 163 3 30 chr12 120602311 120602606 -23183849 - AluJb SINE Alu -20 292 6 596 214 61 73 chr12 120602606 120602888 -23183567 - L1MB8 LINE L1 -284 5894 5612 2130 125 0 0 chr12 120602888 120603199 -23183256 - AluSx SINE Alu -1 311 1 596 214 61 73 chr12 120603199 120603344 -23183111 - L1MB8 LINE L1 -566 5612 5467 568 158 57 57 chr12 120603345 120603522 -23182933 - L1MB8 LINE L1 -798 5348 5172 786 150 0 16 chr12 120603530 120603657 -23182798 - AluSx SINE Alu -8 302 178 270 0 0 0 chr12 120603657 120603687 -23182768 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1968 77 7 57 chr12 120603687 120603987 -23182468 - AluSx SINE Alu -27 285 1 2038 119 7 0 chr12 120604122 120604415 -23182040 - AluSx SINE Alu -15 297 3 188 35 35 0 chr12 120604415 120604444 -23182011 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1498 96 10 0 chr12 120605269 120605468 -23180987 - AluSx SINE Alu -111 201 1 256 287 0 43 chr12 120605943 120606037 -23180418 + MIR SINE MIR 23 112 -150 264 315 130 20 chr12 120606113 120606259 -23180196 + MIR SINE MIR 90 251 -11 1647 143 6 107 chr12 120606266 120606594 -23179861 + AluJo SINE Alu 1 295 -7 1220 145 65 83 chr12 120606888 120607080 -23179375 - AluJo SINE Alu 0 315 129 2271 91 3 0 chr12 120607080 120607377 -23179078 + AluSx SINE Alu 1 298 -14 1220 145 65 83 chr12 120607377 120607504 -23178951 - AluJo SINE Alu -186 129 1 2071 149 40 27 chr12 120607510 120607885 -23178570 - L1MB5 LINE L1 0 6174 5795 524 240 73 91 chr12 120607885 120608078 -23178377 + L2 LINE L2 2702 2890 -424 2129 122 7 0 chr12 120608078 120608382 -23178073 - AluSx SINE Alu -6 306 1 524 240 73 91 chr12 120608382 120608463 -23177992 + L2 LINE L2 2890 2971 -343 * 547 271 128 5 chr12 120608461 120608664 -23177791 + MIR SINE MIR 33 260 -2 910 114 0 50 chr12 120608980 120609120 -23177335 + FLAM_C SINE Alu 1 133 0 215 239 0 0 chr12 120609287 120609333 -23177122 - L2 LINE L2 0 3313 3268 * 300 347 41 47 chr12 120609327 120609497 -23176958 + MIR SINE MIR 75 243 -19 196 286 0 0 chr12 120609854 120609917 -23176538 + L3b LINE CR1 1318 1380 -203 438 317 125 14 chr12 120609998 120610206 -23176249 - MIR SINE MIR -12 250 20 279 279 0 0 chr12 120610659 120610738 -23175717 + GA-rich Low_complexity Low_complexity 3 81 0 22 0 0 0 chr12 120610834 120610856 -23175599 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr12 120611285 120611329 -23175126 + AT_rich Low_complexity Low_complexity 1 44 0 1847 137 0 47 chr12 120611329 120611650 -23174805 + AluJb SINE Alu 1 306 -6 877 102 0 0 chr12 120611657 120611775 -23174680 - FLAM_C SINE Alu -15 118 1 392 284 59 108 chr12 120611780 120612062 -23174393 + Charlie8 DNA MER1_type 66 320 -2097 1978 147 0 0 chr12 120612062 120612361 -23174094 - AluSx SINE Alu -13 299 1 392 284 59 108 chr12 120612361 120612522 -23173933 + Charlie8 DNA MER1_type 320 487 -1930 807 128 0 8 chr12 120612529 120612646 -23173809 + AluJ SINE Alu 2 117 -185 936 151 14 59 chr12 120612684 120612703 -23173752 + AluJb SINE Alu 103 121 -191 2422 50 3 3 chr12 120612703 120613001 -23173454 - AluY SINE Alu -13 298 1 936 151 14 59 chr12 120613001 120613200 -23173255 + AluJb SINE Alu 121 311 -1 269 26 26 0 chr12 120613206 120613244 -23173211 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 282 29 0 0 chr12 120613640 120613675 -23172780 + (CA)n Simple_repeat Simple_repeat 2 36 0 251 305 74 0 chr12 120613806 120613901 -23172554 + MER113 DNA MER1_type? 7 108 -413 226 200 0 36 chr12 120614729 120614784 -23171671 + L1ME LINE L1 5886 5938 -228 660 158 24 16 chr12 120614798 120614925 -23171530 + AluJb SINE Alu 1 128 -184 969 255 207 28 chr12 120615825 120616221 -23170234 + MLT1K LTR MaLR 122 588 0 1463 189 20 27 chr12 120616244 120616540 -23169915 - AluJo SINE Alu -14 298 5 2293 99 0 13 chr12 120616546 120616860 -23169595 - AluSg SINE Alu 0 310 1 1882 136 31 3 chr12 120616860 120617154 -23169301 - AluJo SINE Alu -10 302 1 189 0 0 0 chr12 120617154 120617175 -23169280 + (T)n Simple_repeat Simple_repeat 1 21 0 247 273 65 0 chr12 120617446 120617523 -23168932 - L3 LINE CR1 -541 1036 955 766 213 87 65 chr12 120617692 120617798 -23168657 + MLT1B LTR MaLR 3 105 -285 2218 106 3 0 chr12 120617798 120618109 -23168346 + AluSx SINE Alu 1 312 0 766 213 87 65 chr12 120618109 120618401 -23168054 + MLT1B LTR MaLR 105 336 -54 2048 80 42 0 chr12 120618401 120618690 -23167765 + AluSp SINE Alu 1 301 -12 1215 106 0 0 chr12 120618693 120618854 -23167601 + AluSg/x SINE Alu 136 296 -16 405 103 0 0 chr12 120618854 120618912 -23167543 + MLT1B LTR MaLR 328 385 -5 324 308 87 73 chr12 120618922 120619128 -23167327 - L3 LINE CR1 -899 678 465 1865 145 14 0 chr12 120619128 120619418 -23167037 - AluJb SINE Alu -8 304 11 324 308 87 73 chr12 120619418 120619497 -23166958 - L3 LINE CR1 -1112 465 389 183 314 29 0 chr12 120619518 120619588 -23166867 + MIR SINE MIR 82 153 -55 646 286 34 5 chr12 120619612 120619818 -23166637 - MIR SINE MIR -7 255 44 287 230 40 50 chr12 120620334 120620434 -23166021 + MER20B DNA MER1_type 8 106 -677 443 264 137 0 chr12 120620598 120620780 -23165675 - MIR SINE MIR -50 212 6 1623 165 0 7 chr12 120621810 120622089 -23164366 - AluJo SINE Alu -22 290 14 496 252 20 33 chr12 120622102 120622253 -23164202 - MIR SINE MIR -14 248 100 1509 185 3 32 chr12 120622261 120622403 -23164052 + AluJo SINE Alu 1 146 -166 2251 80 3 0 chr12 120622403 120622692 -23163763 + AluSx SINE Alu 5 294 -18 1509 185 3 32 chr12 120622692 120622863 -23163592 + AluJo SINE Alu 146 305 -7 328 272 29 29 chr12 120622887 120622990 -23163465 - MIR SINE MIR -148 114 12 255 143 24 0 chr12 120623210 120623252 -23163203 + L2 LINE L2 3254 3296 -17 445 281 38 19 chr12 120623325 120623485 -23162970 + MIR SINE MIR 14 176 -86 1732 120 64 14 chr12 120623485 120623768 -23162687 + AluJb SINE Alu 1 297 -15 2132 110 10 0 chr12 120623788 120624088 -23162367 + AluSx SINE Alu 1 303 -9 593 169 108 48 chr12 120624170 120624336 -23162119 - MER58C DNA MER1_type 0 215 40 932 263 58 4 chr12 120624372 120624612 -23161843 + MIR SINE MIR 10 262 0 870 130 14 7 chr12 120624635 120624773 -23161682 - FLAM_C SINE Alu -4 139 1 1682 176 0 57 chr12 120625034 120625352 -23161103 + AluJo SINE Alu 1 300 -12 618 200 27 0 chr12 120626116 120626226 -23160229 + FLAM_C SINE Alu 2 114 -19 266 324 66 37 chr12 120626337 120626578 -23159877 - L1MC5 LINE L1 -286 7675 7428 2090 128 0 3 chr12 120627801 120628114 -23158341 + AluSx SINE Alu 1 312 0 647 126 0 21 chr12 120628124 120628219 -23158236 + HY4 scRNA scRNA 1 93 0 2037 135 3 3 chr12 120628377 120628689 -23157766 - AluJb SINE Alu 0 312 1 285 292 151 9 chr12 120628754 120628919 -23157536 - MIR SINE MIR -61 201 19 2033 114 4 0 chr12 120630050 120630357 -23156098 - AluSx SINE Alu 0 308 1 923 226 23 5 chr12 120630390 120630607 -23155848 + MIR SINE MIR 8 228 -34 2094 71 4 7 chr12 120630692 120630972 -23155483 - AluY SINE Alu -32 279 1 433 131 283 0 chr12 120630972 120631071 -23155384 - AluJo SINE Alu -171 141 15 238 276 23 0 chr12 120631283 120631370 -23155085 + (CGG)n Simple_repeat Simple_repeat 2 90 0 522 187 67 22 chr12 120631877 120632011 -23154444 + MIR3 SINE MIR 17 156 -52 318 210 250 16 chr12 120632044 120632170 -23154285 + MIR SINE MIR 5 160 -48 866 188 67 19 chr12 120632170 120632378 -23154077 - MER20 DNA MER1_type -1 218 1 949 124 86 65 chr12 120632426 120632612 -23153843 - MER30B DNA MER1_type 0 190 1 307 171 13 40 chr12 120632714 120632790 -23153665 + L1MC5 LINE L1 7834 7907 -54 1879 110 23 13 chr12 120633324 120633632 -23152823 - AluSx SINE Alu -1 311 1 613 279 50 50 chr12 120633931 120634189 -23152266 + MIR SINE MIR 5 262 0 2371 42 3 0 chr12 120634199 120634483 -23151972 - AluY SINE Alu -26 285 1 1950 125 7 0 chr12 120634542 120634837 -23151618 - AluSx SINE Alu -15 297 1 1674 195 0 13 chr12 120634837 120635145 -23151310 - AluJo SINE Alu -8 304 1 837 141 87 43 chr12 120635319 120635335 -23151120 - AluJo SINE Alu -1 311 297 2025 105 26 3 chr12 120635335 120635640 -23150815 - AluSx SINE Alu 0 312 1 837 141 87 43 chr12 120635640 120635807 -23150648 - AluJo SINE Alu -15 297 120 23 0 0 0 chr12 120635819 120635842 -23150613 + AT_rich Low_complexity Low_complexity 1 23 0 789 172 8 15 chr12 120635872 120636006 -23150449 - AluJo SINE Alu -169 133 1 588 142 80 0 chr12 120636054 120636073 -23150382 - L1MB7 LINE L1 -19 6165 6149 1825 150 17 3 chr12 120636073 120636367 -23150088 - AluSx SINE Alu -14 298 1 588 142 80 0 chr12 120636367 120636460 -23149995 - L1MB7 LINE L1 -35 6149 6044 25 31 0 0 chr12 120636470 120636502 -23149953 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 120637327 120637348 -23149107 + AT_rich Low_complexity Low_complexity 1 21 0 615 215 7 9 chr12 120637900 120638039 -23148416 - MIR SINE MIR -68 140 15 1860 125 17 27 chr12 120638111 120638408 -23148047 + AluJo SINE Alu 1 294 -18 571 171 116 0 chr12 120638429 120638558 -23147897 - MIR SINE MIR -56 206 63 231 376 52 40 chr12 120639206 120639287 -23147168 + L2 LINE L2 2598 2677 -637 2100 96 7 10 chr12 120639287 120639578 -23146877 - AluSx SINE Alu -22 290 1 231 376 52 40 chr12 120639578 120639746 -23146709 + L2 LINE L2 2677 2850 -464 1194 129 48 5 chr12 120640068 120640254 -23146201 - AluSx SINE Alu -5 307 114 812 199 66 11 chr12 120640254 120640435 -23146020 - MLT1B LTR MaLR -135 255 65 760 151 0 0 chr12 120640435 120640541 -23145914 - AluSx SINE Alu -205 107 2 2093 161 35 5 chr12 120640980 120641352 -23145103 - MLT1B LTR MaLR -7 383 1 306 336 18 9 chr12 120642413 120642526 -23143929 + MIR SINE MIR 92 205 -57 481 301 75 22 chr12 120643482 120643708 -23142747 - MIR SINE MIR -16 246 9 475 342 16 5 chr12 120644514 120644704 -23141751 - Charlie8 DNA MER1_type -2153 264 73 330 165 41 62 chr12 120646063 120646160 -23140295 + MER102a DNA MER1_type 236 330 0 556 135 39 39 chr12 120646319 120646423 -23140032 + AluSg/x SINE Alu 201 304 -8 757 284 41 21 chr12 120646497 120646740 -23139715 + MIR SINE MIR 14 261 -1 2130 113 0 7 chr12 120647143 120647445 -23139010 - AluSx SINE Alu -12 300 1 454 114 0 29 chr12 120648472 120648542 -23137913 - AluS SINE Alu -249 69 2 1761 152 7 10 chr12 120648798 120649087 -23137368 + AluJo SINE Alu 1 288 -24 1960 126 6 35 chr12 120650624 120650942 -23135513 - AluSx SINE Alu -3 309 1 568 275 24 48 chr12 120651541 120651748 -23134707 - MIR SINE MIR 0 262 61 190 239 0 0 chr12 120651909 120651955 -23134500 + MER5C DNA MER1_type 205 250 -74 592 306 35 10 chr12 120652032 120652231 -23134224 - MIR3 SINE MIR -3 205 2 640 295 146 31 chr12 120652638 120653329 -23133126 + L2 LINE L2 2555 3312 -1 2557 31 0 19 chr12 120655981 120656298 -23130157 - AluY SINE Alu 0 311 1 566 139 226 0 chr12 120656298 120656413 -23130042 - AluJo SINE Alu -171 141 1 261 172 0 17 chr12 120656761 120656819 -23129636 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1693 166 0 30 chr12 120657289 120657584 -23128871 - AluJb SINE Alu -4 308 23 2027 134 13 0 chr12 120657603 120657901 -23128554 - AluSx SINE Alu -10 302 1 388 279 66 25 chr12 120657906 120658103 -23128352 - L1MC5 LINE L1 -36 7925 7721 314 343 18 72 chr12 120658115 120658281 -23128174 - L1ME3 LINE L1 -1 6161 6005 1371 193 7 59 chr12 120658436 120658741 -23127714 - AluJo SINE Alu -21 291 3 658 260 73 5 chr12 120658759 120658951 -23127504 - MIR SINE MIR 0 262 58 213 255 0 0 chr12 120659091 120659138 -23127317 - MIR SINE MIR -196 66 20 289 184 0 0 chr12 120659557 120659606 -23126849 - FLAM_A SINE Alu -10 123 75 474 158 0 0 chr12 120659606 120659682 -23126773 + AluJ/FRAM SINE Alu 231 306 -6 1157 196 71 0 chr12 120659720 120659975 -23126480 + Tigger5 DNA MER2_type 2051 2323 0 827 219 60 31 chr12 120660063 120660186 -23126269 - L1MB3 LINE L1 -2 6181 6063 1986 115 14 7 chr12 120660186 120660482 -23125973 - AluSx SINE Alu -14 298 1 827 219 60 31 chr12 120660482 120660613 -23125842 - L1MB3 LINE L1 -120 6063 5906 571 346 61 44 chr12 120660825 120660974 -23125481 - L1ME3 LINE L1 -158 5963 5818 936 218 50 50 chr12 120660974 120661167 -23125288 - MER58A DNA MER1_type -2199 221 26 1582 189 11 0 chr12 120661167 120661442 -23125013 - AluJo SINE Alu -34 278 1 936 218 50 50 chr12 120661442 120661468 -23124987 - MER58A DNA MER1_type -2393 27 2 571 346 61 44 chr12 120661468 120661613 -23124842 - L1ME3 LINE L1 -303 5818 5664 615 150 16 71 chr12 120662139 120662157 -23124298 - FRAM SINE Alu -136 40 23 2115 105 20 13 chr12 120662157 120662461 -23123994 - AluSx SINE Alu -6 306 1 615 150 16 71 chr12 120662461 120662569 -23123886 - FRAM SINE Alu -153 23 1 2242 97 3 0 chr12 120662853 120663152 -23123303 - AluSq SINE Alu -13 300 1 263 345 128 0 chr12 120663272 120663420 -23123035 - MIR SINE MIR -46 216 50 373 265 60 0 chr12 120664157 120664274 -23122181 + MIR SINE MIR 20 143 -119 271 221 47 47 chr12 120664294 120664366 -23122089 + L1MC5 LINE L1 7816 7890 -71 1831 164 10 3 chr12 120664366 120664704 -23121751 - AluJo SINE Alu 0 312 1 271 221 47 47 chr12 120664704 120664717 -23121738 + L1MC5 LINE L1 7889 7901 -60 273 205 77 0 chr12 120664760 120664838 -23121617 + MIR SINE MIR 155 238 -24 338 316 99 1 chr12 120664890 120665038 -23121417 + MIR SINE MIR 8 169 -39 1817 158 6 19 chr12 120665064 120665380 -23121075 - AluJb SINE Alu 0 312 1 339 244 107 8 chr12 120665451 120665582 -23120873 - MER58A DNA MER1_type 0 144 1 186 293 85 12 chr12 120666194 120666276 -23120179 - MIR SINE MIR -85 123 36 353 289 39 0 chr12 120666642 120666746 -23119709 + MIR SINE MIR 8 115 -147 2026 128 17 3 chr12 120666748 120667045 -23119410 - AluJb SINE Alu -11 301 1 2202 122 0 0 chr12 120667059 120667362 -23119093 - AluSx SINE Alu -9 303 1 223 241 0 0 chr12 120667673 120667727 -23118728 + GA-rich Low_complexity Low_complexity 3 56 0 281 326 11 0 chr12 120667928 120668020 -23118435 - MER46C DNA MER2_type -94 244 152 196 255 112 61 chr12 120668329 120668427 -23118028 - MIR SINE MIR -125 137 35 180 243 0 0 chr12 120669627 120669664 -23116791 - L2 LINE L2 -12 3301 3265 * 187 280 200 0 chr12 120669631 120669706 -23116749 - MIR SINE MIR -10 252 163 218 28 0 56 chr12 120669976 120670012 -23116443 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 305 200 114 0 chr12 120670897 120670967 -23115488 + MER116 DNA Mariner 3 80 0 193 308 48 19 chr12 120671306 120671410 -23115045 - MIR SINE MIR -63 145 79 253 294 0 47 chr12 120672023 120672108 -23114347 + MIR SINE MIR 51 131 -77 607 239 126 39 chr12 120672278 120672508 -23113947 - MIR SINE MIR 0 262 13 211 254 34 0 chr12 120672958 120673017 -23113438 - L2 LINE L2 -10 3262 3202 207 233 0 0 chr12 120673096 120673139 -23113316 - L2 LINE L2 -244 3028 2986 360 205 26 43 chr12 120674680 120674797 -23111658 + MER113 DNA MER1_type? 135 249 -272 464 143 33 11 chr12 120674925 120675016 -23111439 + HY3 scRNA scRNA 3 95 -6 307 91 0 0 chr12 120675246 120675290 -23111165 - LTR2B LTR ERV1 0 490 447 350 319 80 35 chr12 120725393 120725619 -23060836 - L1ME LINE L1 -304 5817 5582 2286 110 0 0 chr12 120725622 120725930 -23060525 + AluSx SINE Alu 1 308 -4 485 103 0 13 chr12 120725961 120726039 -23060416 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 253 154 0 46 chr12 120726038 120726103 -23060352 + T-rich Low_complexity Low_complexity 3 64 0 * 771 161 8 15 chr12 120726116 120726246 -23060209 - FLAM_C SINE Alu 0 133 5 367 283 19 44 chr12 120726348 120726507 -23059948 + L3 LINE CR1 1412 1566 -11 473 287 82 20 chr12 120726706 120726901 -23059554 + MIR SINE MIR 12 218 -44 1932 151 3 0 chr12 120726928 120727227 -23059228 + AluSx SINE Alu 1 300 -12 1666 161 11 4 chr12 120727446 120727720 -23058735 - AluJo SINE Alu -36 276 1 959 269 84 78 chr12 120727722 120728142 -23058313 + MLT1G LTR MaLR 32 435 -155 2189 123 0 0 chr12 120728142 120728452 -23058003 - AluSq SINE Alu -3 310 1 959 269 84 78 chr12 120728452 120728609 -23057846 + MLT1G LTR MaLR 435 590 0 739 157 0 0 chr12 120728628 120728743 -23057712 - FRAM SINE Alu -3 173 59 205 100 0 60 chr12 120728800 120728831 -23057624 + (TAA)n Simple_repeat Simple_repeat 1 29 -18 2449 57 0 0 chr12 120728831 120729127 -23057328 + AluY SINE Alu 1 296 -15 205 100 0 60 chr12 120729127 120729145 -23057310 + (TAA)n Simple_repeat Simple_repeat 29 47 0 814 109 8 17 chr12 120729234 120729353 -23057102 - FLAM_C SINE Alu -24 119 2 647 243 37 48 chr12 120729355 120729544 -23056911 - MIR SINE MIR -59 203 17 1985 139 10 0 chr12 120730102 120730403 -23056052 - AluSx SINE Alu -8 304 1 1848 153 0 3 chr12 120730503 120730804 -23055651 + AluJo SINE Alu 1 300 -12 321 253 10 40 chr12 120730811 120730910 -23055545 - MIR SINE MIR -86 176 81 328 293 85 28 chr12 120731041 120731253 -23055202 - L2 LINE L2 -223 3049 2826 372 57 57 0 chr12 120731628 120731681 -23054774 + U6 snRNA snRNA 1 56 -51 23 54 0 0 chr12 120731693 120731730 -23054725 + AT_rich Low_complexity Low_complexity 1 37 0 828 134 0 37 chr12 120731733 120731769 -23054686 + FLAM_C SINE Alu 5 41 -271 4494 75 2 5 chr12 120731769 120732325 -23054130 - MER41A LTR ERV1 0 554 1 828 134 0 37 chr12 120732325 120732422 -23054033 + FLAM_C SINE Alu 41 133 -179 1520 189 10 16 chr12 120732425 120732737 -23053718 + AluJb SINE Alu 1 310 -2 249 220 0 60 chr12 120733064 120733164 -23053291 + (CGGGG)n Simple_repeat Simple_repeat 5 98 0 475 206 10 0 chr12 120733648 120733750 -23052705 - MIR SINE MIR -113 149 47 191 269 0 0 chr12 120734235 120734287 -23052168 + MIR SINE MIR 63 114 -148 2225 115 0 0 chr12 120734287 120734592 -23051863 + AluSx SINE Alu 2 306 -6 424 184 48 19 chr12 120734713 120734816 -23051639 + MIR SINE MIR 103 208 -54 1543 260 36 34 chr12 120735613 120735764 -23050691 - L2 LINE L2 -1 3312 3163 1527 161 27 0 chr12 120735764 120736024 -23050431 + AluSx SINE Alu 35 301 -11 1543 260 36 34 chr12 120736024 120736457 -23049998 - L2 LINE L2 -150 3163 2727 2190 81 5 158 chr12 120736468 120736886 -23049569 - MLT2A2 LTR ERVL 0 453 100 1594 109 13 8 chr12 120736886 120737124 -23049331 - AluSg/x SINE Alu -7 303 65 337 252 19 0 chr12 120737140 120737243 -23049212 - L2 LINE L2 -829 2485 2381 312 312 115 6 chr12 120737755 120737912 -23048543 - MIR SINE MIR -77 185 12 829 239 245 12 chr12 120738030 120738519 -23047936 - L2 LINE L2 -2 3311 2694 519 250 47 6 chr12 120738984 120739164 -23047291 + MIR SINE MIR 40 230 -32 2004 103 0 33 chr12 120739246 120739548 -23046907 + AluJb SINE Alu 3 294 -18 1800 152 35 3 chr12 120739582 120739872 -23046583 + AluSx SINE Alu 3 301 -11 274 250 45 11 chr12 120739873 120739961 -23046494 - L1MC4a LINE L1 -1651 6157 6067 246 145 48 72 chr12 120740031 120740114 -23046341 - L1MC4a LINE L1 -1876 5932 5852 744 199 13 25 chr12 120740251 120740573 -23045882 + (TCCA)n Simple_repeat Simple_repeat 1 317 0 2121 125 3 0 chr12 120740680 120740985 -23045470 + AluSx SINE Alu 1 306 -6 304 304 71 49 chr12 120740992 120741216 -23045239 - L2 LINE L2 -192 3080 2852 1649 151 14 0 chr12 120741402 120741712 -23044743 + AluJb SINE Alu 1 314 0 2119 98 14 3 chr12 120741735 120742032 -23044423 - AluSq SINE Alu -13 300 1 1688 123 112 0 chr12 120742034 120742303 -23044152 - AluSx SINE Alu -13 299 1 327 255 118 0 chr12 120742340 120742442 -23044013 - MIR SINE MIR -108 154 41 849 201 23 11 chr12 120742892 120743066 -23043389 + FRAM SINE Alu 1 176 0 1792 151 3 43 chr12 120743066 120743391 -23043064 + AluSx SINE Alu 1 312 0 1363 226 47 7 chr12 120743404 120743705 -23042750 - MER58B DNA MER1_type -28 313 1 2411 54 3 0 chr12 120743872 120744169 -23042286 + AluY SINE Alu 1 298 -13 1739 140 10 27 chr12 120744173 120744473 -23041982 + AluJo SINE Alu 1 295 -17 335 278 111 0 chr12 120744604 120744730 -23041725 - MIR SINE MIR -59 203 64 2026 146 0 0 chr12 120744731 120745026 -23041429 + AluSx SINE Alu 1 295 -17 2196 118 0 0 chr12 120745028 120745332 -23041123 + AluSx SINE Alu 1 304 -8 1923 144 7 3 chr12 120745395 120745693 -23040762 - AluJo SINE Alu -1 311 13 2207 115 0 0 chr12 120746003 120746308 -23040147 - AluSx SINE Alu -7 305 1 566 234 42 37 chr12 120746576 120746755 -23039700 + LTR16C LTR ERVL 146 385 -106 1873 166 0 10 chr12 120746755 120747068 -23039387 - AluJo SINE Alu 0 312 3 566 234 42 37 chr12 120747068 120747176 -23039279 + LTR16C LTR ERVL 385 491 0 404 292 29 74 chr12 120747386 120747542 -23038913 + MIR SINE MIR 21 164 -98 1587 156 64 21 chr12 120747542 120747824 -23038631 - AluJo SINE Alu -18 294 1 404 292 29 74 chr12 120747824 120747910 -23038545 + MIR SINE MIR 164 252 -10 26 0 0 0 chr12 120747930 120747956 -23038499 + AT_rich Low_complexity Low_complexity 1 26 0 453 229 9 18 chr12 120749494 120749603 -23036852 - MLT1K LTR MaLR -4 584 477 1830 158 0 10 chr12 120749642 120749939 -23036516 + AluJo SINE Alu 1 294 -18 507 268 201 38 chr12 120749997 120750389 -23036066 - LTR33 LTR ERVL -11 510 55 506 231 22 0 chr12 120751135 120751367 -23035088 + (CA)n Simple_repeat Simple_repeat 1 237 0 278 243 17 28 chr12 120751387 120751564 -23034891 + (CATA)n Simple_repeat Simple_repeat 4 178 0 240 262 36 0 chr12 120751588 120751756 -23034699 + (CA)n Simple_repeat Simple_repeat 1 174 0 415 214 24 6 chr12 120751855 120752023 -23034432 + (CA)n Simple_repeat Simple_repeat 1 171 0 1441 144 69 29 chr12 120752346 120752623 -23033832 + AluJo SINE Alu 1 288 -24 1565 185 180 28 chr12 120753400 120753493 -23032962 + MLT1D LTR MaLR 15 93 -412 2460 50 0 7 chr12 120753493 120753792 -23032663 - AluY SINE Alu -14 297 1 1565 185 180 28 chr12 120753792 120754120 -23032335 + MLT1D LTR MaLR 93 500 -5 1799 137 11 14 chr12 120754453 120754731 -23031724 - AluSx SINE Alu -35 277 1 612 206 137 50 chr12 120754947 120755166 -23031289 + MER102a DNA MER1_type 83 320 -10 1123 137 11 0 chr12 120755687 120755885 -23030570 - AluSg/x SINE Alu 0 322 123 610 224 133 64 chr12 120755903 120755978 -23030477 + MER113 DNA MER1_type? 2 70 -451 2052 124 7 3 chr12 120755978 120756277 -23030178 - AluSx SINE Alu -12 300 1 381 224 265 0 chr12 120756287 120756385 -23030070 - FLAM_A SINE Alu -9 124 1 610 224 133 64 chr12 120756385 120756539 -23029916 + MER113 DNA MER1_type? 78 220 -301 2052 134 0 0 chr12 120756539 120756838 -23029617 + AluSx SINE Alu 11 309 -3 610 224 133 64 chr12 120756838 120756988 -23029467 + MER113 DNA MER1_type? 220 420 -101 1749 126 0 0 chr12 120757337 120757583 -23028872 - AluSx SINE Alu -66 246 1 1122 157 0 0 chr12 120757867 120758033 -23028422 + FRAM SINE Alu 1 166 0 1877 141 0 17 chr12 120758103 120758264 -23028191 - AluJb SINE Alu -19 293 138 2113 110 10 0 chr12 120758264 120758564 -23027891 - AluSx SINE Alu -9 303 1 1877 141 0 17 chr12 120758564 120758700 -23027755 - AluJb SINE Alu -174 138 1 232 252 189 24 chr12 120758995 120759122 -23027333 + MER117 DNA MER1_type 19 166 -31 1687 152 27 7 chr12 120759641 120759938 -23026517 - AluJo SINE Alu -9 303 1 2001 128 3 35 chr12 120759995 120760314 -23026141 + AluSx SINE Alu 1 309 -3 1627 139 82 14 chr12 120760747 120761027 -23025428 - AluJb SINE Alu -13 299 1 1884 158 0 22 chr12 120761446 120761763 -23024692 + AluJo SINE Alu 3 312 0 182 229 49 66 chr12 120762003 120762064 -23024391 + MIR SINE MIR 87 146 -62 1725 138 4 0 chr12 120762178 120762446 -23024009 + AluSx SINE Alu 44 312 0 300 110 110 0 chr12 120762501 120762574 -23023881 - MIR SINE MIR -75 133 53 23 33 0 0 chr12 120764541 120764571 -23021884 + GC_rich Low_complexity Low_complexity 1 30 0 2233 84 0 16 chr12 120764695 120765003 -23021452 - AluSx SINE Alu -9 303 1 920 156 16 92 chr12 120765224 120765474 -23020981 + AluSp SINE Alu 79 309 -4 1533 221 3 0 chr12 120765704 120766002 -23020453 - AluJo SINE Alu -3 309 11 644 250 47 6 chr12 120766008 120766180 -23020275 - MIR SINE MIR -81 181 3 254 302 167 0 chr12 120766511 120766607 -23019848 + MIR SINE MIR 35 146 -62 307 275 0 0 chr12 120767243 120767323 -23019132 - MIR SINE MIR -63 145 66 2050 119 3 0 chr12 120767470 120767763 -23018692 - AluSq SINE Alu -19 294 1 522 339 155 31 chr12 120767900 120768408 -23018047 - L2 LINE L2 0 3272 2702 278 289 33 4 chr12 120768398 120768519 -23017936 + MIR SINE MIR 53 145 -63 * 234 330 72 57 chr12 120768663 120768872 -23017583 - L2 LINE L2 -31 3241 3030 712 188 0 0 chr12 120768978 120769132 -23017323 - FLAM_C SINE Alu 0 155 2 328 320 21 0 chr12 120769148 120769245 -23017210 + L1MC4 LINE L1 6604 6702 -1340 353 197 0 42 chr12 120769332 120769345 -23017110 + L1MC4 LINE L1 6638 6650 -1392 1981 116 18 3 chr12 120769345 120769630 -23016825 + AluSq SINE Alu 1 289 -24 353 197 0 42 chr12 120769630 120769687 -23016768 + L1MC4 LINE L1 6650 6705 -1337 * 393 365 86 66 chr12 120769633 120770581 -23015874 - L1MC5 LINE L1 -209 7752 4154 395 325 62 96 chr12 120770084 120770490 -23015965 + L1M4c LINE L1 1886 2277 -4107 52 19 0 0 chr12 120770583 120770637 -23015818 + AT_rich Low_complexity Low_complexity 1 54 0 884 118 29 7 chr12 120770816 120770952 -23015503 + AluSg/x SINE Alu 158 296 -16 2159 99 0 3 chr12 120770974 120771266 -23015189 + AluSx SINE Alu 1 291 -21 937 232 18 0 chr12 120771438 120771658 -23014797 + L1MB8 LINE L1 5825 6048 -130 2264 99 3 3 chr12 120771753 120772065 -23014390 - AluSx SINE Alu 0 312 1 449 204 102 36 chr12 120772094 120772231 -23014224 - MIR SINE MIR 0 262 117 334 287 21 11 chr12 120772800 120772894 -23013561 + MER91A DNA MER1_type 5 99 -97 2372 99 0 0 chr12 120772988 120773300 -23013155 - AluSx SINE Alu 0 312 1 304 345 107 0 chr12 120773721 120773889 -23012566 + MIR SINE MIR 77 262 0 1105 212 4 48 chr12 120773997 120774034 -23012421 - MER58A DNA MER1_type -2199 221 184 2184 101 6 19 chr12 120774034 120774350 -23012105 - AluSx SINE Alu 0 312 1 1105 212 4 48 chr12 120774350 120774543 -23011912 - MER58A DNA MER1_type -2236 184 1 482 236 18 0 chr12 120775008 120775118 -23011337 + FRAM SINE Alu 43 154 -22 291 140 0 70 chr12 120775858 120775958 -23010497 + (TG)n Simple_repeat Simple_repeat 2 94 0 183 80 0 0 chr12 120775986 120776011 -23010444 + (TG)n Simple_repeat Simple_repeat 2 26 0 977 275 114 29 chr12 120776518 120776943 -23009512 - MLT1C LTR MaLR -1 466 1 568 248 92 5 chr12 120777143 120777343 -23009112 + MIR SINE MIR 37 252 -10 2242 102 0 7 chr12 120777373 120777678 -23008777 + AluSq SINE Alu 1 303 -10 237 321 84 0 chr12 120777699 120777830 -23008625 - L1MC4 LINE L1 -1 8041 7900 2259 116 0 0 chr12 120777847 120778158 -23008297 - AluSx SINE Alu -1 311 1 1649 117 57 73 chr12 120778490 120778816 -23007639 - AluSx SINE Alu 0 321 1 206 177 7 109 chr12 120778825 120778972 -23007483 + (TTG)n Simple_repeat Simple_repeat 1 132 0 228 287 61 9 chr12 120779755 120779870 -23006585 - Charlie5 DNA MER1_type -4 2608 2488 945 178 6 0 chr12 120783541 120783710 -23002745 - FRAM SINE Alu -3 173 4 311 218 126 23 chr12 120783731 120783818 -23002637 - MIR3 SINE MIR -8 200 105 267 306 0 0 chr12 120784275 120784347 -23002108 + MER102a DNA MER1_type 49 120 -210 2120 121 0 0 chr12 120784367 120784665 -23001790 - AluSx SINE Alu -14 298 1 1094 196 65 4 chr12 120784682 120784927 -23001528 + AluJo SINE Alu 43 302 -10 1664 68 0 0 chr12 120784956 120785163 -23001292 + AluSg/x SINE Alu 85 291 -21 275 296 104 17 chr12 120785257 120785372 -23001083 + MER102a DNA MER1_type 198 322 -8 713 151 0 0 chr12 120786397 120786503 -22999952 - AluJb SINE Alu -13 299 194 356 253 118 29 chr12 120786662 120786832 -22999623 + HAL1 LINE L1 2301 2485 -22 230 253 21 21 chr12 120786905 120787000 -22999455 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 193 343 108 0 chr12 120789429 120789531 -22996924 + MER5A DNA MER1_type 77 189 0 1839 155 0 16 chr12 120793333 120793637 -22992818 + AluJo SINE Alu 1 299 -13 183 408 53 18 chr12 120793674 120793902 -22992553 - L2 LINE L2 0 3313 3078 783 272 31 24 chr12 120794803 120795035 -22991420 + L1MC4a LINE L1 5586 5822 -1986 1724 184 3 3 chr12 120795035 120795340 -22991115 + AluJo SINE Alu 1 305 -7 783 272 31 24 chr12 120795340 120795361 -22991094 + L1MC4a LINE L1 5822 5841 -1967 720 174 29 29 chr12 120795363 120795501 -22990954 - AluSp/q SINE Alu -18 295 158 800 243 31 62 chr12 120795625 120795703 -22990752 + L1ME3A LINE L1 5898 5977 -193 1692 143 8 0 chr12 120795703 120795962 -22990493 + AluSx SINE Alu 50 310 -2 800 243 31 62 chr12 120795962 120796142 -22990313 + L1ME3A LINE L1 5977 6148 -22 344 351 101 27 chr12 120796109 120796437 -22990018 - L1MC/D LINE L1 -1995 5813 5462 * 878 229 0 0 chr12 120796545 120796720 -22989735 - AluJb SINE Alu -15 297 123 670 253 19 0 chr12 120796748 120796906 -22989549 + MLT1H LTR MaLR 1 161 -388 2227 110 0 0 chr12 120796913 120797213 -22989242 + AluSx SINE Alu 1 300 -12 2144 95 13 13 chr12 120797223 120797528 -22988927 + AluSx SINE Alu 1 305 -7 2070 123 7 0 chr12 120798493 120798794 -22987661 + AluSx SINE Alu 1 303 -9 826 162 0 22 chr12 120798805 120798941 -22987514 + FLAM_C SINE Alu 1 133 0 397 253 0 35 chr12 120799010 120799033 -22987422 + MIR SINE MIR 2 24 -184 2345 156 63 23 chr12 120799033 120799317 -22987138 + MER65C LTR ERV1 1 311 -150 1726 167 3 14 chr12 120799317 120799610 -22986845 - AluJo SINE Alu -22 290 1 2345 156 63 23 chr12 120799610 120799768 -22986687 + MER65C LTR ERV1 311 461 0 397 253 0 35 chr12 120799768 120799870 -22986585 + MIR SINE MIR 24 121 -87 2203 122 58 22 chr12 120800106 120800468 -22985987 - THE1C LTR MaLR 0 375 1 379 272 155 43 chr12 120800679 120800879 -22985576 - MIR SINE MIR 0 262 31 2174 101 10 0 chr12 120800879 120801175 -22985280 - AluSx SINE Alu -13 299 1 379 272 155 43 chr12 120801175 120801206 -22985249 - MIR SINE MIR -231 31 5 1226 136 148 57 chr12 120801248 120801305 -22985150 - MER4B LTR ERV1 -246 364 314 1511 162 62 10 chr12 120801305 120801595 -22984860 + AluSx SINE Alu 1 305 -7 1226 136 148 57 chr12 120801595 120801864 -22984591 - MER4B LTR ERV1 -292 318 7 2085 131 3 0 chr12 120801864 120802170 -22984285 + AluSx SINE Alu 1 307 -5 1371 230 30 18 chr12 120802186 120802229 -22984226 - MLT1A1 LTR MaLR -26 339 298 2383 87 3 0 chr12 120802229 120802540 -22983915 + AluSp SINE Alu 1 312 -1 1371 230 30 18 chr12 120802540 120802831 -22983624 - MLT1A1 LTR MaLR -67 298 1 1403 181 15 0 chr12 120802912 120803172 -22983283 - AluJo SINE Alu -48 264 1 2239 106 3 3 chr12 120803496 120803799 -22982656 + AluSx SINE Alu 1 303 -9 1213 106 0 28 chr12 120803799 120803978 -22982477 + AluSq SINE Alu 134 307 -6 1526 188 38 3 chr12 120804048 120804340 -22982115 + AluJb SINE Alu 1 302 -10 2012 110 43 4 chr12 120804548 120804829 -22981626 + AluSx SINE Alu 1 292 -20 592 172 53 13 chr12 120804910 120805087 -22981368 + L1MC5 LINE L1 6562 6753 -1061 844 186 115 0 chr12 120805112 120805295 -22981160 + MER3 DNA MER1_type 2 205 -4 297 250 68 0 chr12 120805385 120805473 -22980982 + L1MC5 LINE L1 7487 7580 -381 236 92 0 92 chr12 120806158 120806183 -22980272 - LTR66 LTR ERVL -158 452 426 2418 77 3 22 chr12 120806183 120806495 -22979960 + AluSg SINE Alu 1 306 -4 236 92 0 92 chr12 120806495 120806534 -22979921 - LTR66 LTR ERVL -184 426 394 324 158 0 0 chr12 120806534 120806591 -22979864 + (CA)n Simple_repeat Simple_repeat 2 58 0 315 223 180 7 chr12 120806659 120806798 -22979657 + L1ME4a LINE L1 5959 6121 0 203 162 0 0 chr12 120806920 120806957 -22979498 + (CA)n Simple_repeat Simple_repeat 1 37 0 280 323 140 0 chr12 120807261 120807425 -22979030 - MIR SINE MIR -6 256 70 1003 243 9 0 chr12 120809685 120809907 -22976548 - MER58A DNA MER1_type 0 224 1 2293 74 20 14 chr12 120810017 120810314 -22976141 + AluY SINE Alu 1 299 -12 2335 86 0 20 chr12 120810343 120810644 -22975811 + AluSx SINE Alu 1 295 -17 494 251 126 35 chr12 120811009 120811261 -22975194 + MIR SINE MIR 1 261 -1 1826 147 8 48 chr12 120811277 120811427 -22975028 - MER2 DNA MER2_type -3 341 187 2199 118 17 0 chr12 120811427 120811716 -22974739 - AluSx SINE Alu -18 294 1 1826 147 8 48 chr12 120811716 120811920 -22974535 - MER2 DNA MER2_type -157 187 1 507 278 157 5 chr12 120813338 120813554 -22972901 - Charlie8 DNA MER1_type -2140 277 29 345 298 101 8 chr12 120814199 120814390 -22972065 + L1ME3A LINE L1 5743 5948 -216 1458 170 3 64 chr12 120814598 120814910 -22971545 - AluJo SINE Alu -18 294 2 1832 144 8 69 chr12 120814946 120815108 -22971347 + MLT1A1 LTR MaLR 1 171 -194 2216 97 0 0 chr12 120815108 120815420 -22971035 + AluSg SINE Alu 1 312 0 1832 144 8 69 chr12 120815420 120815645 -22970810 + MLT1A1 LTR MaLR 171 365 0 2058 117 3 24 chr12 120815658 120815972 -22970483 - AluSx SINE Alu 0 308 1 1301 107 0 0 chr12 120818318 120818496 -22967959 + AluSg/x SINE Alu 129 306 -4 872 214 73 5 chr12 120819968 120820174 -22966281 + AluJo SINE Alu 1 220 -92 1014 140 0 0 chr12 120820202 120820352 -22966103 + AluJb SINE Alu 163 312 0 455 329 49 16 chr12 120820430 120820676 -22965779 + MIR SINE MIR 8 261 -1 1968 113 4 4 chr12 120820765 120821021 -22965434 + AluSx SINE Alu 4 259 -53 1719 118 4 0 chr12 120821200 120821428 -22965027 + AluSg/x SINE Alu 70 298 -12 554 211 138 127 chr12 120821431 120821792 -22964663 + MLT1H LTR MaLR 177 541 -8 1874 173 0 19 chr12 120821830 120822142 -22964313 + AluJb SINE Alu 1 306 -6 473 276 1 38 chr12 120822529 120822693 -22963762 - MIR3 SINE MIR -63 145 5 824 214 7 0 chr12 120823314 120823726 -22962729 + (TGGA)n Simple_repeat Simple_repeat 1 415 0 269 247 86 43 chr12 120824913 120825006 -22961449 - L2 LINE L2 -2 3311 3215 235 255 0 0 chr12 120825084 120825135 -22961320 + MLT1H LTR MaLR 248 298 -251 245 235 15 0 chr12 120825228 120825296 -22961159 + L2 LINE L2 2990 3058 -214 * 277 325 50 0 chr12 120825292 120825409 -22961046 - L2 LINE L2 -9 3263 3141 273 371 32 14 chr12 120825409 120825630 -22960825 + MIR SINE MIR 2 226 -36 857 169 6 25 chr12 120826193 120826353 -22960102 - FRAM SINE Alu 0 40 1 2242 129 0 3 chr12 120826514 120826817 -22959638 + AluSx SINE Alu 11 312 0 2236 167 14 23 chr12 120827029 120827082 -22959373 - L1MB7 LINE L1 -18 6166 6114 2336 108 0 0 chr12 120827082 120827377 -22959078 + AluSx SINE Alu 1 295 -17 2236 167 14 23 chr12 120827377 120827765 -22958690 - L1MB7 LINE L1 -70 6114 5729 368 329 19 34 chr12 120828226 120828433 -22958022 - L1MB7 LINE L1 -2074 5734 5531 371 235 26 98 chr12 120828445 120828598 -22957857 - MIR SINE MIR -9 253 112 625 230 65 73 chr12 120828611 120828872 -22957583 + MLT1H LTR MaLR 36 294 -255 245 253 84 0 chr12 120828926 120829009 -22957446 + MLT1H LTR MaLR 459 548 -1 195 196 137 0 chr12 120829025 120829076 -22957379 - MIR SINE MIR -170 92 35 2025 125 7 0 chr12 120829181 120829462 -22956993 - AluSx SINE Alu -9 303 21 2082 139 7 3 chr12 120829509 120829812 -22956643 - AluJb SINE Alu -6 306 3 248 286 0 0 chr12 120829814 120829870 -22956585 - MER5A DNA MER1_type -118 71 16 229 274 147 16 chr12 120829907 120830097 -22956358 - L1MB7 LINE L1 -2290 5518 5304 1686 150 54 4 chr12 120830179 120830459 -22955996 + AluSg SINE Alu 3 296 -14 220 169 17 17 chr12 120830459 120830518 -22955937 + G-rich Low_complexity Low_complexity 1 59 0 1671 184 21 3 chr12 120830521 120830809 -22955646 + AluJo SINE Alu 11 303 -9 227 326 0 11 chr12 120831412 120831501 -22954954 - L2 LINE L2 -217 3055 2968 509 207 16 135 chr12 120831613 120831669 -22954786 - MIR SINE MIR -36 226 165 2045 111 38 3 chr12 120831669 120831957 -22954498 + AluSx SINE Alu 1 298 -14 509 207 16 135 chr12 120831957 120832093 -22954362 - MIR SINE MIR -97 165 57 459 310 19 6 chr12 120832297 120832455 -22954000 + MIR SINE MIR 20 179 -83 1668 138 59 35 chr12 120832526 120832815 -22953640 + AluJo SINE Alu 6 301 -11 325 100 86 0 chr12 120833473 120833543 -22952912 - L1MA7 LINE L1 -6 6285 6210 2454 96 0 0 chr12 120833547 120833849 -22952606 - AluSx SINE Alu -10 302 1 1984 150 11 0 chr12 120834685 120834972 -22951483 + AluSx SINE Alu 1 290 -22 351 310 108 60 chr12 120835022 120835254 -22951201 - L1ME4a LINE L1 -1 6120 5878 497 279 64 12 chr12 120835311 120835483 -22950972 + MIR SINE MIR 6 186 -76 1202 194 14 0 chr12 120835818 120836029 -22950426 - AluJb SINE Alu -12 300 87 2366 95 6 19 chr12 120836515 120836831 -22949624 + AluSx SINE Alu 1 312 0 244 232 274 21 chr12 120836847 120837037 -22949418 + L1ME4a LINE L1 5879 6116 -5 2110 107 35 3 chr12 120837044 120837333 -22949122 - AluSx SINE Alu -14 298 1 23 33 0 0 chr12 120837333 120837363 -22949092 + AT_rich Low_complexity Low_complexity 1 30 0 543 242 21 16 chr12 120838069 120838255 -22948200 + L1MC4a LINE L1 5867 6053 -1755 511 293 237 21 chr12 120838481 120838819 -22947636 + MLT1K LTR MaLR 149 559 -29 2262 108 7 0 chr12 120838967 120839264 -22947191 + AluSx SINE Alu 1 299 -13 1884 176 3 7 chr12 120839454 120839744 -22946711 - AluJo SINE Alu -23 289 1 2192 141 3 0 chr12 120839753 120840059 -22946396 - AluSx SINE Alu -5 307 1 347 275 76 0 chr12 120840070 120840117 -22946338 - L1MA10 LINE L1 0 6334 6288 2358 191 112 65 chr12 120840117 120840740 -22945715 - L1ME1 LINE L1 -44 6122 5449 2195 105 17 7 chr12 120840740 120841034 -22945421 - AluSx SINE Alu -15 297 1 2358 191 112 65 chr12 120841034 120841446 -22945009 - L1ME1 LINE L1 -717 5449 5058 842 203 136 54 chr12 120841452 120841694 -22944761 + AluJo SINE Alu 44 305 -7 672 191 45 13 chr12 120841698 120841855 -22944600 - L1ME1 LINE L1 -1362 4784 4623 277 149 0 0 chr12 120841906 120841953 -22944502 + FLAM SINE Alu 85 131 -2 272 167 61 30 chr12 120842017 120842029 -22944426 + AluJo SINE Alu 68 78 -224 180 0 0 0 chr12 120842029 120842049 -22944406 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 272 167 61 30 chr12 120842049 120842102 -22944353 + AluJo SINE Alu 78 135 -167 1658 189 11 3 chr12 120842127 120842412 -22944043 + AluJo SINE Alu 7 293 -19 2102 117 3 17 chr12 120842414 120842712 -22943743 + AluSx SINE Alu 1 294 -18 4714 218 48 13 chr12 120842727 120843443 -22943012 - L1ME1 LINE L1 -1509 4637 3862 1312 140 35 4 chr12 120843443 120843672 -22942783 + MER46A DNA MER2_type 1 236 0 4714 218 48 13 chr12 120843672 120844152 -22942303 - L1ME1 LINE L1 -2284 3862 3400 443 250 19 0 chr12 120844156 120844264 -22942191 - MIR SINE MIR -150 112 3 1522 283 120 8 chr12 120844370 120844904 -22941551 + MLT1G1 LTR MaLR 1 594 -1 293 268 0 0 chr12 120844907 120844978 -22941477 - MIR SINE MIR -47 215 145 678 283 5 22 chr12 120844997 120845181 -22941274 - MIR SINE MIR -47 215 35 202 273 91 34 chr12 120846401 120846489 -22939966 + L2 LINE L2 2701 2793 -521 522 150 0 0 chr12 120846859 120846939 -22939516 - FLAM SINE Alu -22 121 42 1741 151 8 0 chr12 120846964 120847223 -22939232 - AluJo SINE Alu -51 261 1 1035 104 7 7 chr12 120847801 120847945 -22938510 + AluSg/x SINE Alu 157 300 -10 297 0 0 0 chr12 120847945 120847978 -22938477 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr12 120847982 120848007 -22938448 + (CCA)n Simple_repeat Simple_repeat 1 25 0 1648 171 53 4 chr12 120848085 120848366 -22938089 + AluJb SINE Alu 1 295 -17 1467 221 47 42 chr12 120848368 120848692 -22937763 + Charlie4a DNA MER1_type 97 425 -1536 1975 171 0 3 chr12 120848692 120849002 -22937453 + AluJo SINE Alu 2 310 -2 1467 221 47 42 chr12 120849002 120849084 -22937371 + Charlie4a DNA MER1_type 425 505 -3 446 173 13 0 chr12 120850282 120850357 -22936098 - MER2 DNA MER2_type -1 344 269 2318 97 3 0 chr12 120850379 120850713 -22935742 + AluY SINE Alu 1 311 0 234 88 123 18 chr12 120850716 120850773 -22935682 - MER2 DNA MER2_type -134 211 149 447 248 75 0 chr12 120851323 120851456 -22934999 + MER117 DNA MER1_type 14 156 -41 221 288 12 12 chr12 120852024 120852104 -22934351 + GA-rich Low_complexity Low_complexity 2 81 0 384 68 0 141 chr12 120852249 120852315 -22934140 - AluJ/FLAM SINE Alu -209 93 98 2469 99 0 0 chr12 120852315 120852627 -22933828 - AluSx SINE Alu 0 312 1 384 68 0 141 chr12 120852627 120852675 -22933780 - AluJ/FLAM SINE Alu -203 99 46 222 271 0 14 chr12 120852811 120852881 -22933574 + L2 LINE L2 2981 3049 -223 467 293 83 24 chr12 120852977 120853182 -22933273 - MIR SINE MIR -45 217 1 1046 239 99 10 chr12 120853447 120853805 -22932650 + MLT1J LTR MaLR 70 507 -4 2102 122 44 0 chr12 120853817 120854113 -22932342 + AluSq SINE Alu 1 309 -4 353 270 81 0 chr12 120854132 120854243 -22932212 + L2 LINE L2 3151 3270 -2 791 146 13 21 chr12 120854292 120854512 -22931943 + CT-rich Low_complexity Low_complexity 1 218 0 263 135 0 0 chr12 120854512 120854549 -22931906 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 999 122 0 14 chr12 120854670 120854818 -22931637 + AluJb SINE Alu 161 306 -6 263 258 67 0 chr12 120854825 120854945 -22931510 + L1MD2 LINE L1 5116 5243 -903 219 119 34 17 chr12 120854945 120855004 -22931451 + (TA)n Simple_repeat Simple_repeat 2 61 0 746 169 8 0 chr12 120855031 120855161 -22931294 + AluJ SINE Alu 1 131 -171 650 192 102 30 chr12 120855161 120855194 -22931261 + AluJ SINE Alu 134 163 -149 3531 83 66 36 chr12 120855194 120855772 -22930683 - LTR61 LTR ERV1 0 595 1 650 192 102 30 chr12 120855772 120855905 -22930550 + AluJ SINE Alu 163 312 0 685 134 8 8 chr12 120855914 120856041 -22930414 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 423 265 42 18 chr12 120856043 120856209 -22930246 + L1MD2 LINE L1 5270 5439 -2369 312 221 0 13 chr12 120856256 120856333 -22930122 + LTR56 LTR ERV1 354 429 -16 1989 124 0 32 chr12 120856351 120856665 -22929790 + AluSx SINE Alu 1 304 -8 395 221 0 12 chr12 120856671 120856757 -22929698 + L1MD2 LINE L1 6198 6282 -77 2066 89 38 0 chr12 120856779 120857071 -22929384 + AluSg SINE Alu 1 303 -7 1416 99 18 14 chr12 120857211 120857452 -22929003 + AluSc SINE Alu 57 298 0 186 304 62 36 chr12 120857506 120857618 -22928837 + L2 LINE L2 3087 3201 -112 1050 244 83 34 chr12 120857627 120857901 -22928554 - L2 LINE L2 -6 3307 3048 1550 166 7 34 chr12 120857901 120858196 -22928259 + AluJo SINE Alu 1 287 -25 1050 244 83 34 chr12 120858196 120858525 -22927930 - L2 LINE L2 -265 3048 2667 266 176 47 82 chr12 120858525 120858581 -22927874 - L1MC4 LINE L1 -814 7228 7174 1669 158 92 0 chr12 120858581 120858865 -22927590 - AluJo SINE Alu -2 310 1 266 176 47 82 chr12 120858865 120858893 -22927562 - L1MC4 LINE L1 -868 7174 7147 243 176 0 0 chr12 120858896 120858947 -22927508 - FLAM_A SINE Alu 0 133 83 1178 199 84 77 chr12 120858948 120859351 -22927104 - L1MC4 LINE L1 -888 7154 6749 614 126 24 16 chr12 120859416 120859543 -22926912 + CT-rich Low_complexity Low_complexity 3 130 0 189 253 13 13 chr12 120859555 120859634 -22926821 + CT-rich Low_complexity Low_complexity 4 82 0 259 392 0 0 chr12 120859815 120859866 -22926589 + A-rich Low_complexity Low_complexity 1 51 0 * 297 252 20 41 chr12 120859858 120860005 -22926450 + GA-rich Low_complexity Low_complexity 3 146 0 2298 85 3 0 chr12 120860295 120860600 -22925855 + AluY SINE Alu 3 308 -3 1820 137 18 4 chr12 120860677 120860977 -22925478 - AluJo SINE Alu 0 304 1 2111 134 0 0 chr12 120860983 120861290 -22925165 - AluSg SINE Alu -3 307 1 609 244 195 5 chr12 120861290 120861495 -22924960 - L1MC4 LINE L1 -1985 5823 5580 292 253 33 33 chr12 120861613 120861763 -22924692 + L1MC4a LINE L1 6153 6302 -1506 254 114 0 0 chr12 120861787 120861822 -22924633 - Alu SINE Alu -267 35 1 747 168 0 0 chr12 120861869 120862012 -22924443 + GA-rich Low_complexity Low_complexity 4 146 0 2019 94 45 0 chr12 120862028 120862316 -22924139 - AluSx SINE Alu -11 301 1 859 236 26 71 chr12 120862337 120862646 -22923809 + L1MC4a LINE L1 6381 6675 -1133 1493 214 3 37 chr12 120862650 120862973 -22923482 + AluJb SINE Alu 1 312 0 431 190 5 38 chr12 120862982 120863166 -22923289 + GA-rich Low_complexity Low_complexity 2 179 0 750 170 0 30 chr12 120863330 120863465 -22922990 - FLAM_C SINE Alu -6 137 7 2010 120 33 0 chr12 120863483 120863783 -22922672 - AluSg SINE Alu 0 310 1 2145 122 3 3 chr12 120863836 120864147 -22922308 + AluSx SINE Alu 1 311 -1 462 239 42 28 chr12 120864197 120864339 -22922116 + MIR SINE MIR 46 189 -73 1934 90 0 4 chr12 120864625 120864880 -22921575 - AluSq SINE Alu -59 254 1 215 334 50 19 chr12 120864887 120865040 -22921415 + MIR3 SINE MIR 54 208 -32 324 158 0 0 chr12 120865084 120865141 -22921314 + GA-rich Low_complexity Low_complexity 4 60 0 911 217 33 5 chr12 120865627 120865811 -22920644 - MER5A DNA MER1_type 0 189 1 438 266 162 7 chr12 120865972 120866126 -22920329 + MIR SINE MIR 6 183 -79 232 398 8 16 chr12 120866246 120866374 -22920081 - L2 LINE L2 -222 3050 2924 606 296 79 9 chr12 120866461 120866677 -22919778 - MIR SINE MIR 0 262 32 2221 184 107 30 chr12 120866928 120867422 -22919033 + MLT1F LTR MaLR 11 542 0 215 292 14 28 chr12 120867891 120867963 -22918492 + MIR SINE MIR 16 86 -122 1708 190 100 11 chr12 120867969 120868087 -22918368 - MLT1F LTR MaLR 0 542 436 2214 91 0 17 chr12 120868087 120868385 -22918070 + AluSc SINE Alu 1 293 -16 1708 190 100 11 chr12 120868385 120868645 -22917810 - MLT1F LTR MaLR -106 436 130 795 160 8 8 chr12 120868716 120868841 -22917614 - FLAM_A SINE Alu -8 125 1 245 266 18 53 chr12 120868859 120868903 -22917552 + L2 LINE L2 2866 2910 -362 1695 221 37 74 chr12 120868903 120869388 -22917067 - MLT1C LTR MaLR 0 467 1 245 266 18 53 chr12 120869388 120869456 -22916999 + L2 LINE L2 2910 2974 -298 2101 116 14 0 chr12 120869472 120869765 -22916690 - AluSx SINE Alu -14 298 2 1530 132 59 193 chr12 120869914 120870406 -22916049 + MSTB LTR MaLR 1 426 0 508 319 21 21 chr12 120870411 120870599 -22915856 + L2 LINE L2 3125 3312 -1 669 284 5 25 chr12 120871310 120871514 -22914941 - MIR SINE MIR -52 210 11 1544 151 41 63 chr12 120871530 120871849 -22914606 - AluJo SINE Alu 0 312 1 216 174 58 43 chr12 120871855 120871924 -22914531 - L3b LINE CR1 -199 1384 1315 880 213 165 5 chr12 120871958 120872146 -22914309 + MER20 DNA MER1_type 1 218 -1 744 200 123 0 chr12 120872167 120872337 -22914118 + MER3 DNA MER1_type 17 207 -2 268 256 73 0 chr12 120872580 120872662 -22913793 + MIR SINE MIR 79 166 -96 262 306 10 53 chr12 120872772 120872949 -22913506 - MIR SINE MIR -63 145 24 427 250 92 13 chr12 120873110 120873262 -22913193 - MIR SINE MIR -75 187 24 1976 121 0 0 chr12 120873305 120873577 -22912878 + AluSx SINE Alu 19 290 -22 409 339 17 16 chr12 120873942 120874112 -22912343 + MIR SINE MIR 16 190 -62 365 330 124 16 chr12 120874183 120874368 -22912087 + MIR SINE MIR 47 251 -11 261 283 9 75 chr12 120874387 120874493 -22911962 - MIR SINE MIR -5 257 159 323 201 161 57 chr12 120874584 120874870 -22911585 - LTR33A LTR ERVL -162 361 9 271 308 13 0 chr12 120874893 120874971 -22911484 - MIR SINE MIR -103 159 81 572 281 38 16 chr12 120875957 120876142 -22910313 + MIR SINE MIR 53 241 -21 1298 122 51 0 chr12 120876299 120876496 -22909959 + AluSx SINE Alu 1 207 -105 2250 136 48 20 chr12 120876499 120876852 -22909603 - THE1B LTR MaLR 0 364 2 3781 77 2 4 chr12 120876852 120877348 -22909107 - THE1B-int LTR MaLR 0 1580 1086 2200 95 3 3 chr12 120878047 120878341 -22908114 + AluSx SINE Alu 2 295 -17 541 176 24 40 chr12 120878351 120878476 -22907979 + MLT1C LTR MaLR 53 175 -292 1574 163 0 51 chr12 120878505 120878800 -22907655 - AluJo SINE Alu -32 280 1 2293 96 3 0 chr12 120879500 120879803 -22906652 - AluSx SINE Alu -8 304 1 674 256 28 11 chr12 120879989 120880169 -22906286 + MIR SINE MIR 66 248 -14 412 307 27 15 chr12 120880165 120880324 -22906131 - MIR SINE MIR -40 168 11 * 269 258 219 8 chr12 120880255 120880383 -22906072 + MIR3 SINE MIR 32 186 -22 * 745 219 6 0 chr12 120881050 120881210 -22905245 + LTR16C LTR ERVL 331 491 0 4003 129 14 28 chr12 120881494 120881996 -22904459 + L1PA16 LINE L1 5530 6038 -128 1967 99 10 14 chr12 120881996 120882439 -22904016 + AluSc SINE Alu 1 309 0 2263 92 0 13 chr12 120882445 120882581 -22903874 + AluSx SINE Alu 1 137 -175 2086 80 3 54 chr12 120882581 120882895 -22903560 + AluY SINE Alu 1 298 -13 2263 92 0 13 chr12 120882895 120883061 -22903394 + AluSx SINE Alu 137 299 -13 4003 129 14 28 chr12 120883061 120883195 -22903260 + L1PA16 LINE L1 6043 6164 -2 829 150 0 0 chr12 120883520 120883640 -22902815 - FLAM_A SINE Alu -12 121 2 186 43 0 0 chr12 120883644 120883667 -22902788 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 653 281 21 47 chr12 120883671 120884048 -22902407 + MLT1H LTR MaLR 60 392 -17 212 365 125 0 chr12 120884061 120884269 -22902186 + L2 LINE L2 3065 3298 -15 357 24 0 0 chr12 120884269 120884311 -22902144 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 721 179 12 0 chr12 120884374 120884536 -22901919 + GA-rich Low_complexity Low_complexity 1 164 0 1290 291 117 11 chr12 120885334 120885804 -22900651 + MLT1K LTR MaLR 61 580 -8 204 227 15 15 chr12 120886209 120886275 -22900180 + CT-rich Low_complexity Low_complexity 2 67 0 252 250 35 13 chr12 120886578 120886665 -22899790 + MIR3 SINE MIR 70 158 -50 314 184 35 46 chr12 120886750 120886837 -22899618 - L2 LINE L2 0 3313 3228 315 271 51 56 chr12 120886964 120887021 -22899434 - L1MC5 LINE L1 -48 7913 7857 2175 109 0 7 chr12 120887021 120887324 -22899131 + AluSx SINE Alu 5 305 -7 315 271 51 56 chr12 120887324 120887480 -22898975 - L1MC5 LINE L1 -104 7857 7701 1964 139 0 3 chr12 120887484 120887772 -22898683 - AluJb SINE Alu -25 287 1 348 179 18 80 chr12 120887800 120887912 -22898543 + L1ME1 LINE L1 6070 6332 -2 * 423 190 17 139 chr12 120887901 120888138 -22898317 - L1MC5 LINE L1 -262 7699 7492 288 70 0 0 chr12 120888394 120888437 -22898018 + (TGG)n Simple_repeat Simple_repeat 2 44 0 1920 104 25 4 chr12 120888437 120888717 -22897738 - AluSx SINE Alu -26 286 1 555 221 64 23 chr12 120889215 120889387 -22897068 + MIR SINE MIR 20 198 -64 2156 126 7 0 chr12 120889392 120889701 -22896754 + AluSx SINE Alu 1 311 -1 426 307 79 50 chr12 120889826 120890106 -22896349 - L2 LINE L2 -17 3296 3009 2147 113 7 0 chr12 120890110 120890410 -22896045 + AluSx SINE Alu 5 306 -6 206 278 37 0 chr12 120890770 120890824 -22895631 - MIR SINE MIR -59 149 94 433 299 10 72 chr12 120891986 120892135 -22894320 - MIR SINE MIR -55 207 73 2091 136 0 0 chr12 120892135 120892437 -22894018 - AluSx SINE Alu -8 304 3 433 299 10 72 chr12 120892437 120892494 -22893961 - MIR SINE MIR -189 73 14 180 0 0 0 chr12 120892559 120892579 -22893876 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1342 137 6 109 chr12 120892581 120892902 -22893553 - AluSc SINE Alu -16 293 6 2204 104 3 0 chr12 120892908 120893207 -22893248 - AluSx SINE Alu -12 300 1 183 306 73 32 chr12 120893866 120893990 -22892465 - L2 LINE L2 -195 3077 2949 2173 83 21 3 chr12 120894448 120894738 -22891717 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr12 120895674 120895694 -22890761 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 436 184 43 0 chr12 120895933 120896074 -22890381 + (TCCA)n Simple_repeat Simple_repeat 4 150 0 2137 125 3 0 chr12 120896083 120896394 -22890061 - AluSx SINE Alu 0 312 1 285 271 0 0 chr12 120896409 120896468 -22889987 + (CCCA)n Simple_repeat Simple_repeat 2 60 0 653 218 4 15 chr12 120896550 120897021 -22889434 + (TCCA)n Simple_repeat Simple_repeat 1 465 0 744 202 8 16 chr12 120897042 120897300 -22889155 + (TCCA)n Simple_repeat Simple_repeat 1 256 0 281 145 72 0 chr12 120897358 120897441 -22889014 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 385 217 139 9 chr12 120897621 120897736 -22888719 + MIR SINE MIR 21 150 -112 591 240 78 21 chr12 120897803 120897995 -22888460 - L2 LINE L2 -5 3308 3106 777 156 0 0 chr12 120898035 120898157 -22888298 - AluSc SINE Alu 0 309 188 552 151 255 0 chr12 120898148 120898254 -22888201 - FLAM_C SINE Alu -9 134 2 * 183 374 65 36 chr12 120898462 120898601 -22887854 - L3 LINE CR1 -89 1488 1346 409 215 0 0 chr12 120899267 120899346 -22887109 + CT-rich Low_complexity Low_complexity 2 80 0 767 89 30 7 chr12 120899348 120899483 -22886972 + (TTCC)n Simple_repeat Simple_repeat 4 141 0 1414 186 36 46 chr12 120899490 120899797 -22886658 - AluJo SINE Alu -8 304 1 358 296 96 8 chr12 120899834 120899959 -22886496 + MIR SINE MIR 34 169 -93 952 226 99 101 chr12 120900373 120900798 -22885657 + LTR16C LTR ERVL 68 491 0 2201 115 0 0 chr12 120900917 120901229 -22885226 - AluSx SINE Alu 0 312 1 203 311 0 14 chr12 120901852 120901939 -22884516 - MIR SINE MIR -76 132 80 273 302 47 0 chr12 120902691 120902777 -22883678 + MIR SINE MIR 43 132 -76 2238 100 3 3 chr12 120902870 120903179 -22883276 + AluSg SINE Alu 1 309 -1 1102 139 0 0 chr12 120903180 120903346 -22883109 + AluSg/x SINE Alu 130 295 -15 351 224 35 9 chr12 120903376 120903492 -22882963 + (CA)n Simple_repeat Simple_repeat 2 120 0 34 24 0 0 chr12 120903505 120903546 -22882909 + AT_rich Low_complexity Low_complexity 1 41 0 896 51 0 2 chr12 120903729 120903994 -22882461 + AluY SINE Alu 1 304 0 271 246 0 0 chr12 120904056 120904117 -22882338 + L2 LINE L2 3248 3308 -5 330 26 0 0 chr12 120904229 120904268 -22882187 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 825 142 0 0 chr12 120904269 120904389 -22882066 - AluSq/x SINE Alu -192 120 1 285 125 62 0 chr12 120904390 120904438 -22882017 + MLT1H1 LTR MaLR 493 543 -12 344 207 35 35 chr12 120904449 120904536 -22881919 - MIR SINE MIR -155 107 21 2046 119 7 0 chr12 120905152 120905445 -22881010 - AluSx SINE Alu -12 300 6 387 213 0 0 chr12 120905871 120905951 -22880504 - MIR SINE MIR -71 191 112 1540 158 0 64 chr12 120905988 120906166 -22880289 - AluJo SINE Alu -21 291 140 1813 70 0 4 chr12 120906166 120906394 -22880061 + AluSg/x SINE Alu 68 294 -18 1540 158 0 64 chr12 120906394 120906526 -22879929 - AluJo SINE Alu -172 140 1 2550 107 61 84 chr12 120906987 120907131 -22879324 + MER4C LTR ERV1 2 148 -317 1739 103 0 0 chr12 120907131 120907365 -22879090 + AluSx SINE Alu 34 267 -45 2550 107 61 84 chr12 120907365 120907695 -22878760 + MER4C LTR ERV1 148 465 0 1736 176 112 71 chr12 120907706 120907771 -22878684 + MER4C-int LTR ERV1 8 69 -5877 1829 139 4 4 chr12 120907771 120908045 -22878410 - AluSx SINE Alu -38 274 1 1736 176 112 71 chr12 120908045 120908947 -22877508 + MER4C-int LTR ERV1 69 932 -5014 243 0 0 0 chr12 120908947 120908974 -22877481 + (TG)n Simple_repeat Simple_repeat 2 28 0 186 43 0 0 chr12 120908973 120908996 -22877459 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 * 1736 176 112 71 chr12 120908974 120909010 -22877445 + MER4C-int LTR ERV1 932 965 -4981 1876 152 0 19 chr12 120909010 120909326 -22877129 - AluSx SINE Alu -2 310 1 1736 176 112 71 chr12 120909326 120909669 -22876786 + MER4C-int LTR ERV1 965 2324 -3622 26 0 0 0 chr12 120909700 120909726 -22876729 + AT_rich Low_complexity Low_complexity 1 26 0 859 155 116 69 chr12 120909728 120909960 -22876495 + PABL_A-int LTR ERV1 731 973 -4042 807 136 45 49 chr12 120909961 120910175 -22876280 - AluJb SINE Alu -9 303 6 1277 169 50 74 chr12 120910180 120910363 -22876092 + PABL_A-int LTR ERV1 1788 1974 -4624 1788 161 13 7 chr12 120910363 120910673 -22875782 + AluJb SINE Alu 1 312 0 1277 169 50 74 chr12 120910673 120910892 -22875563 + PABL_A-int LTR ERV1 1974 2180 -4418 1371 111 89 24 chr12 120910898 120911252 -22875203 + MER4C LTR ERV1 16 454 -11 2030 104 13 3 chr12 120911254 120911552 -22874903 - AluSq SINE Alu -12 301 1 314 244 69 99 chr12 120911570 120911701 -22874754 + MIR SINE MIR 122 248 -14 539 198 48 8 chr12 120911768 120911894 -22874561 - MIR SINE MIR -97 165 35 2192 104 0 0 chr12 120911914 120912211 -22874244 + AluSx SINE Alu 1 297 -15 310 89 0 0 chr12 120912227 120912272 -22874183 + L1MA1 LINE L1 6254 6298 -4 574 266 0 0 chr12 120912397 120912521 -22873934 + MIR SINE MIR 50 173 -89 246 62 0 0 chr12 120912587 120912619 -22873836 + (CAT)n Simple_repeat Simple_repeat 1 32 0 209 108 27 0 chr12 120912717 120912754 -22873701 + (CA)n Simple_repeat Simple_repeat 1 38 0 2088 115 3 0 chr12 120913599 120913894 -22872561 + AluJb SINE Alu 1 296 -16 730 177 73 0 chr12 120913903 120914027 -22872428 + FLAM_A SINE Alu 1 133 0 1121 181 77 42 chr12 120914147 120914319 -22872136 - L1MB7 LINE L1 0 6184 6019 2171 102 7 0 chr12 120914319 120914614 -22871841 - AluSx SINE Alu -15 297 1 1121 181 77 42 chr12 120914614 120914817 -22871638 - L1MB7 LINE L1 -165 6019 5742 2002 133 0 3 chr12 120914836 120915130 -22871325 - AluJb SINE Alu -18 294 2 951 270 54 4 chr12 120915452 120915693 -22870762 + MIR SINE MIR 4 256 -6 1867 124 3 17 chr12 120915694 120915993 -22870462 + AluJb SINE Alu 1 295 -17 2054 103 0 3 chr12 120916128 120916419 -22870036 + AluSx SINE Alu 21 310 -2 197 161 0 0 chr12 120916470 120916501 -22869954 - MIR SINE MIR -64 144 114 341 244 163 23 chr12 120916795 120916967 -22869488 + MIR SINE MIR 67 262 0 2124 90 3 27 chr12 120916987 120917287 -22869168 - AluSx SINE Alu -19 293 1 1524 267 69 19 chr12 120917295 120918094 -22868361 + L2 LINE L2 2463 3303 -10 1991 139 0 0 chr12 120918287 120918588 -22867867 + AluSx SINE Alu 9 309 -3 909 162 4 116 chr12 120918902 120919143 -22867312 + MER20 DNA MER1_type 1 214 -5 326 175 202 44 chr12 120919189 120919303 -22867152 - LTR8A LTR ERV1 -266 461 330 330 307 83 84 chr12 120919405 120919818 -22866637 + L1M3c LINE L1 894 3307 -1300 305 253 44 55 chr12 120919956 120920047 -22866408 - L1MC4 LINE L1 -1339 6703 6614 26 30 0 0 chr12 120920054 120920087 -22866368 + AT_rich Low_complexity Low_complexity 1 33 0 822 203 46 37 chr12 120920126 120920343 -22866112 + MIR SINE MIR 2 220 -42 2128 105 0 22 chr12 120920372 120920687 -22865768 - AluSx SINE Alu -4 308 1 471 276 77 11 chr12 120920762 120920943 -22865512 - MIR SINE MIR -45 217 25 291 241 0 0 chr12 120921708 120921766 -22864689 - MIR SINE MIR -132 130 73 258 243 100 0 chr12 120921873 120921943 -22864512 + LTR8 LTR ERV1 2 78 -613 248 273 0 26 chr12 120921986 120922063 -22864392 + LTR8 LTR ERV1 56 130 -561 1034 108 0 7 chr12 120922063 120922211 -22864244 - FRAM SINE Alu -17 159 13 228 233 0 0 chr12 120923599 120923642 -22862813 + (CA)n Simple_repeat Simple_repeat 1 43 0 442 348 13 0 chr12 120923939 120924094 -22862361 - MIR3 SINE MIR -2 206 50 1154 52 13 0 chr12 120924292 120924445 -22862010 + (TTTC)n Simple_repeat Simple_repeat 4 158 0 372 283 14 38 chr12 120925227 120925474 -22860981 + CT-rich Low_complexity Low_complexity 1 241 0 372 236 24 24 chr12 120926395 120926518 -22859937 + L1ME4a LINE L1 5961 6083 -38 258 229 59 68 chr12 120926649 120926767 -22859688 - L1MC4a LINE L1 -1634 6174 6058 2114 161 65 0 chr12 120927185 120927557 -22858898 + MSTD LTR MaLR 1 396 0 295 217 194 21 chr12 120928140 120928284 -22858171 + MIR3 SINE MIR 37 211 -51 * 500 341 86 9 chr12 120928249 120928469 -22857986 - MIR SINE MIR -10 252 16 237 345 58 0 chr12 120928619 120928706 -22857749 + L2 LINE L2 3209 3300 -13 264 313 12 24 chr12 120928710 120928793 -22857662 - L2 LINE L2 -6 3307 3226 471 268 128 34 chr12 120928865 120929044 -22857411 - MIR SINE MIR -64 198 3 380 304 57 36 chr12 120929439 120929686 -22856769 - L1M4 LINE L1 -1863 4283 4032 332 219 95 19 chr12 120930328 120930452 -22856003 - L1M4 LINE L1 -2235 3911 3775 180 286 14 14 chr12 120930942 120931012 -22855443 + L3b LINE CR1 1174 1243 -340 251 278 17 61 chr12 120931169 120931284 -22855171 - MIR SINE MIR -95 167 58 313 298 162 76 chr12 120931769 120931846 -22854609 + L2 LINE L2 2856 2925 -388 4191 94 4 0 chr12 120931846 120932398 -22854057 - MER41A LTR ERV1 0 554 1 313 298 162 76 chr12 120932398 120932740 -22853715 + L2 LINE L2 2925 3311 -2 592 197 0 34 chr12 120932766 120932827 -22853628 + MIR SINE MIR 63 120 -142 1626 162 3 39 chr12 120932827 120933135 -22853320 - AluJo SINE Alu -15 297 1 592 197 0 34 chr12 120933135 120933190 -22853265 + MIR SINE MIR 120 175 -87 220 340 40 0 chr12 120933248 120933348 -22853107 - MIR SINE MIR -124 138 35 399 303 48 44 chr12 120933526 120933739 -22852716 + L1ME3A LINE L1 5691 5907 -263 1054 195 9 44 chr12 120933739 120933965 -22852490 + MER20 DNA MER1_type 1 218 -1 399 303 48 44 chr12 120933965 120934022 -22852433 + L1ME3A LINE L1 5907 5962 -208 1522 170 13 29 chr12 120934233 120934539 -22851916 - AluJb SINE Alu -9 303 3 271 267 95 19 chr12 120934618 120934723 -22851732 + MIR SINE MIR 32 144 -118 1932 126 34 0 chr12 120934761 120935054 -22851401 + AluSx SINE Alu 5 307 -5 270 295 5 5 chr12 120935393 120935578 -22850877 + (TG)n Simple_repeat Simple_repeat 1 210 0 200 180 0 20 chr12 120935743 120935793 -22850662 + CT-rich Low_complexity Low_complexity 5 53 0 2089 107 0 0 chr12 120936437 120936718 -22849737 + AluSx SINE Alu 1 281 -31 279 0 0 0 chr12 120936721 120936752 -22849703 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 205 256 0 0 chr12 120937432 120937475 -22848980 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 332 190 13 0 chr12 120937494 120937573 -22848882 + (TCCA)n Simple_repeat Simple_repeat 3 82 0 632 266 9 6 chr12 120937604 120937949 -22848506 + (TCCA)n Simple_repeat Simple_repeat 1 346 0 215 212 0 15 chr12 120938047 120938113 -22848342 + (CCCA)n Simple_repeat Simple_repeat 4 68 0 285 367 0 0 chr12 120938132 120938241 -22848214 + (CCCA)n Simple_repeat Simple_repeat 2 110 0 2234 100 0 3 chr12 120938390 120938699 -22847756 - AluSx SINE Alu -3 309 2 823 150 20 13 chr12 120938871 120939024 -22847431 + FRAM SINE Alu 1 154 -22 721 87 10 0 chr12 120939059 120939163 -22847292 + AluY SINE Alu 3 107 -204 415 286 0 50 chr12 120939501 120939620 -22846835 - L2 LINE L2 -10 3303 3191 279 93 0 0 chr12 120939933 120939976 -22846479 + (CA)n Simple_repeat Simple_repeat 1 43 0 517 308 76 27 chr12 120940310 120940534 -22845921 - MIR SINE MIR -10 252 18 351 252 7 13 chr12 120940768 120940919 -22845536 + GA-rich Low_complexity Low_complexity 1 150 0 273 175 32 32 chr12 120941203 120941266 -22845189 + U7 snRNA snRNA 1 63 0 226 306 0 16 chr12 120941522 120941536 -22844919 - L2 LINE L2 -3 3269 3256 1858 161 0 7 chr12 120941536 120941840 -22844615 + AluJo SINE Alu 1 302 -10 226 306 0 16 chr12 120941840 120941887 -22844568 - L2 LINE L2 -16 3256 3209 534 262 148 33 chr12 120941965 120942175 -22844280 + MIR SINE MIR 25 258 -4 1382 181 9 83 chr12 120942209 120942545 -22843910 + AluJo SINE Alu 1 311 -1 249 292 0 0 chr12 120942799 120942871 -22843584 - L1MC/D LINE L1 -2286 5522 5451 1775 201 102 3 chr12 120943467 120943859 -22842596 - MER63B DNA MER1_type -5 431 1 458 238 10 10 chr12 120944424 120944525 -22841930 - FLAM_C SINE Alu -31 112 12 181 277 96 53 chr12 120944540 120944634 -22841821 - MIR SINE MIR -69 193 96 1989 146 0 0 chr12 120944774 120945083 -22841372 + AluSx SINE Alu 1 309 -3 495 309 97 39 chr12 120945233 120945730 -22840725 - L2 LINE L2 0 3313 2791 299 146 0 0 chr12 120946001 120946049 -22840406 - MLT1I LTR MaLR 0 409 362 2563 36 3 0 chr12 120946075 120946383 -22840072 - AluY SINE Alu -2 309 1 343 241 35 0 chr12 120946551 120946638 -22839817 - MLT1I LTR MaLR -319 90 1 1126 193 0 44 chr12 120946874 120947123 -22839332 - AluJo SINE Alu -18 294 57 827 182 19 65 chr12 120947121 120947428 -22839027 - AluSx SINE Alu -9 303 11 * 709 250 161 0 chr12 120947841 120948021 -22838434 + MIR SINE MIR 53 261 -1 197 247 31 72 chr12 120948061 120948158 -22838297 - MIR SINE MIR 0 262 170 272 180 33 0 chr12 120949300 120949361 -22837094 - MER116 DNA Mariner -5 75 13 1917 150 0 0 chr12 120949615 120949915 -22836540 - AluJb SINE Alu -12 300 1 704 283 30 8 chr12 120950871 120951108 -22835347 + MIR SINE MIR 1 242 -20 1721 130 33 39 chr12 120951501 120951847 -22834608 - AluSx SINE Alu 0 312 5 346 310 28 7 chr12 120952016 120952161 -22834294 - L1ME4a LINE L1 -6 6115 5968 545 289 34 28 chr12 120952206 120952459 -22833996 - MIR SINE MIR -1 261 10 712 250 78 16 chr12 120952461 120952717 -22833738 - L1ME4a LINE L1 -250 5871 5600 2058 221 53 44 chr12 120952726 120953200 -22833255 - L1ME1 LINE L1 -5 6161 5679 1987 97 14 21 chr12 120953200 120953518 -22832937 + AluSq SINE Alu 1 316 0 2058 221 53 44 chr12 120953518 120953630 -22832825 - L1ME1 LINE L1 -487 5679 5569 1516 266 101 27 chr12 120953624 120954260 -22832195 - L1MEc LINE L1 -5608 788 106 * 249 106 0 0 chr12 120954260 120954307 -22832148 + L1P LINE L1 5285 5331 -843 1494 79 5 37 chr12 120954307 120954522 -22831933 + AluSx SINE Alu 1 208 -104 1171 92 6 30 chr12 120954525 120954689 -22831766 + MER49 LTR ERV1 723 882 -41 241 133 0 22 chr12 120954796 120954841 -22831614 - MER69 DNA AcHobo -499 2027 1984 189 195 0 0 chr12 120954841 120954882 -22831573 + (TG)n Simple_repeat Simple_repeat 2 42 0 1576 163 44 7 chr12 120955776 120956070 -22830385 + AluJb SINE Alu 3 307 -5 264 260 10 77 chr12 120956070 120956174 -22830281 + MER5A DNA MER1_type 67 163 -26 514 309 36 0 chr12 120956315 120956480 -22829975 - MER5B DNA MER1_type 0 178 8 1969 102 36 10 chr12 120956660 120956964 -22829491 - AluSx SINE Alu 0 312 1 762 212 22 16 chr12 120956969 120957153 -22829302 - MER5A DNA MER1_type -2 187 3 289 314 76 19 chr12 120957453 120957558 -22828897 + L2 LINE L2 3203 3313 0 495 207 16 55 chr12 120957572 120957758 -22828697 - MIR SINE MIR -48 214 35 1183 43 0 7 chr12 120958386 120958700 -22827755 - AluY SINE Alu 0 453 141 24 67 0 0 chr12 120959028 120959073 -22827382 + GC_rich Low_complexity Low_complexity 1 45 0 250 268 84 7 chr12 120959146 120959288 -22827167 + MIR3 SINE MIR 3 155 -53 880 43 0 60 chr12 120959293 120959410 -22827045 + FLAM_C SINE Alu 2 111 -32 298 28 0 0 chr12 120959434 120959470 -22826985 + U2 snRNA snRNA 1 36 -152 621 144 23 61 chr12 120959485 120959617 -22826838 + FLAM_A SINE Alu 1 127 -6 335 326 0 11 chr12 120959620 120959712 -22826743 + L1MC4 LINE L1 6613 6703 -1339 315 370 0 0 chr12 120959634 120959726 -22826729 - L1MC4 LINE L1 -1341 6701 6610 * 2141 110 0 3 chr12 120959731 120960013 -22826442 + AluSq SINE Alu 2 282 -31 197 32 0 32 chr12 120960017 120960048 -22826407 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5216 121 11 6 chr12 120960049 120960875 -22825580 + L1PA13 LINE L1 5327 6156 -7 318 235 0 12 chr12 120960901 120960982 -22825473 - L1MEc LINE L1 -6279 117 38 717 220 0 0 chr12 120961442 120961574 -22824881 + FLAM_A SINE Alu 1 132 -1 207 0 0 0 chr12 120961787 120961810 -22824645 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr12 120961999 120962025 -22824430 + AT_rich Low_complexity Low_complexity 1 26 0 215 246 16 0 chr12 120962294 120962355 -22824100 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 1650 154 79 7 chr12 120962363 120962643 -22823812 - AluSg SINE Alu -10 300 1 302 278 81 46 chr12 120962649 120962822 -22823633 - L2 LINE L2 -13 3300 3122 445 291 8 0 chr12 120962873 120963007 -22823448 - MIR3 SINE MIR -41 167 33 223 423 6 0 chr12 120963952 120964115 -22822340 + (CCCCAG)n Simple_repeat Simple_repeat 5 168 0 * 282 326 16 8 chr12 120964051 120964180 -22822275 + (CCCTAG)n Simple_repeat Simple_repeat 2 131 0 756 278 93 30 chr12 120964301 120964635 -22821820 + MLT1I LTR MaLR 55 409 0 247 229 0 0 chr12 120964762 120964810 -22821645 + L2 LINE L2 3259 3306 -7 257 245 47 47 chr12 120964933 120965039 -22821416 + MIR SINE MIR 48 153 -109 212 226 183 32 chr12 120965199 120965292 -22821163 - MIR SINE MIR -8 254 148 639 158 22 25 chr12 120965351 120965591 -22820864 + CT-rich Low_complexity Low_complexity 1 239 0 774 307 70 0 chr12 120965627 120965871 -22820584 + MIR SINE MIR 2 262 0 486 342 79 0 chr12 120965952 120966192 -22820263 - MIR SINE MIR 0 262 4 25 31 0 0 chr12 120966607 120966639 -22819816 + AT_rich Low_complexity Low_complexity 1 32 0 440 213 221 7 chr12 120967006 120967142 -22819313 - MER5A DNA MER1_type 0 189 25 474 269 84 24 chr12 120967274 120967441 -22819014 + MIR SINE MIR 69 245 -17 613 134 0 17 chr12 120967442 120967561 -22818894 + (TCCC)n Simple_repeat Simple_repeat 2 118 0 802 250 189 7 chr12 120967899 120968195 -22818260 + LTR16C LTR ERVL 142 491 0 267 31 0 0 chr12 120968308 120968340 -22818115 + (TC)n Simple_repeat Simple_repeat 2 33 0 258 32 0 0 chr12 120968339 120968370 -22818085 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 215 164 16 0 chr12 120968370 120968431 -22818024 + CT-rich Low_complexity Low_complexity 2 63 0 284 287 35 23 chr12 120968567 120968654 -22817801 - MIR SINE MIR -98 164 77 264 236 0 0 chr12 120968641 120968696 -22817759 - L2 LINE L2 -5 3267 3213 * 316 268 0 109 chr12 120968720 120968783 -22817672 - MER5A DNA MER1_type -1 188 146 1904 166 0 0 chr12 120968783 120969073 -22817382 + AluSx SINE Alu 1 290 -22 316 268 0 109 chr12 120969073 120969147 -22817308 - MER5A DNA MER1_type -43 146 66 344 272 150 0 chr12 120969620 120969767 -22816688 - MIR SINE MIR -74 188 20 349 303 109 40 chr12 120970034 120970209 -22816246 - MIR SINE MIR -73 189 3 206 140 0 40 chr12 120970568 120970618 -22815837 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 2120 104 0 24 chr12 120970695 120971018 -22815437 + AluSx SINE Alu 1 316 0 480 306 65 27 chr12 120971171 120971357 -22815098 + MER91A DNA MER1_type 4 196 0 736 122 12 41 chr12 120971743 120971915 -22814540 + (TCCA)n Simple_repeat Simple_repeat 2 168 0 2435 93 6 6 chr12 120971926 120972238 -22814217 - AluSx SINE Alu 0 312 1 388 332 69 20 chr12 120972240 120972442 -22814013 - L2 LINE L2 -92 3221 3010 454 222 17 34 chr12 120972793 120972910 -22813545 + MIR SINE MIR 32 146 -116 623 232 134 0 chr12 120972989 120973153 -22813302 - MER5A DNA MER1_type 0 189 4 181 344 16 0 chr12 120973285 120973346 -22813109 + MIR SINE MIR 195 256 -6 245 254 95 77 chr12 120973929 120974098 -22812357 - MIR SINE MIR -52 210 39 * 269 276 10 10 chr12 120974084 120974182 -22812273 - MER5A DNA MER1_type -88 101 4 226 383 9 9 chr12 120974254 120974369 -22812086 - L2 LINE L2 0 3313 3199 539 128 64 40 chr12 120974758 120974883 -22811572 + MER53 DNA DNA 2 129 -60 330 232 160 24 chr12 120974895 120975020 -22811435 + MER5B DNA MER1_type 37 178 0 1885 164 0 23 chr12 120975211 120975521 -22810934 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 120975592 120975615 -22810840 + AT_rich Low_complexity Low_complexity 1 23 0 773 204 0 45 chr12 120975618 120975794 -22810661 - MIR SINE MIR -14 248 81 369 0 0 0 chr12 120976244 120976285 -22810170 + (TC)n Simple_repeat Simple_repeat 1 41 0 769 156 16 0 chr12 120976512 120976640 -22809815 - FLAM_C SINE Alu -2 131 2 180 77 0 0 chr12 120976644 120976670 -22809785 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 1110 239 0 0 chr12 120976752 120976974 -22809481 - MLT1D-int LTR MaLR -488 883 662 1976 218 7 66 chr12 120977041 120977583 -22808872 - MLT1D-int LTR MaLR -724 647 169 1642 190 7 0 chr12 120977583 120977862 -22808593 - AluJb SINE Alu 0 312 32 1976 218 7 66 chr12 120977862 120978018 -22808437 - MLT1D-int LTR MaLR -1202 169 5 1931 203 94 13 chr12 120978022 120978489 -22807966 - MLT1D LTR MaLR 0 505 1 300 278 62 17 chr12 120978705 120978881 -22807574 + L1ME4a LINE L1 5927 6110 -11 622 277 28 6 chr12 120979495 120979672 -22806783 + MIR SINE MIR 39 219 -43 213 108 0 0 chr12 120979694 120979731 -22806724 + (CAT)n Simple_repeat Simple_repeat 2 38 0 324 269 19 46 chr12 120979836 120979944 -22806511 + MIR SINE MIR 154 258 -4 213 158 26 0 chr12 120979962 120980000 -22806455 + GA-rich Low_complexity Low_complexity 2 40 0 248 239 26 8 chr12 120980035 120980152 -22806303 + GA-rich Low_complexity Low_complexity 2 120 0 187 326 109 0 chr12 120981071 120981163 -22805292 - L2 LINE L2 -9 3263 3162 206 336 20 67 chr12 120981231 120981380 -22805075 + MIR SINE MIR 108 249 -13 660 254 111 11 chr12 120981389 120981570 -22804885 + MIR SINE MIR 33 231 -31 1322 156 56 12 chr12 120981607 120981683 -22804772 - Tigger7 DNA MER2_type 0 2491 2420 1967 144 0 39 chr12 120981683 120981835 -22804620 + MER47A DNA MER2_type 1 157 -2166 1864 130 30 23 chr12 120981835 120982134 -22804321 + AluJo SINE Alu 1 301 -11 1967 144 0 39 chr12 120982134 120982362 -22804093 + MER47A DNA MER2_type 157 366 0 1322 156 56 12 chr12 120982362 120982535 -22803920 - Tigger7 DNA MER2_type -71 2420 2231 286 169 117 26 chr12 120982610 120982687 -22803768 + MIR SINE MIR 117 200 -62 309 53 0 0 chr12 120982694 120982732 -22803723 + LTR56 LTR ERV1 351 388 -57 1583 162 142 20 chr12 120982777 120983129 -22803326 - MSTD LTR MaLR -1 395 1 771 220 6 33 chr12 120983428 120983610 -22802845 - MLT1C LTR MaLR 0 467 298 1101 214 123 22 chr12 120983643 120983961 -22802494 - MLT1K LTR MaLR -43 545 196 355 303 34 0 chr12 120984305 120984424 -22802031 - MIR3 SINE MIR -33 175 53 217 316 0 13 chr12 120984528 120984607 -22801848 - L2 LINE L2 -222 3050 2973 256 247 26 39 chr12 120984632 120984709 -22801746 + CT-rich Low_complexity Low_complexity 3 78 0 547 188 0 0 chr12 120984969 120985086 -22801369 + L1MA9 LINE L1 6195 6311 -1 665 259 180 43 chr12 120985681 120986207 -22800248 + L2 LINE L2 2708 3311 -2 317 269 13 0 chr12 120986211 120986289 -22800166 - MIR SINE MIR -63 145 67 210 248 50 59 chr12 120986267 120986368 -22800087 + MIR SINE MIR 66 165 -97 * 208 291 0 0 chr12 120986582 120986637 -22799818 - MIR3 SINE MIR -1 207 153 331 308 61 37 chr12 120986756 120986970 -22799485 - LTR16B LTR ERVL -139 325 107 233 250 125 0 chr12 120987050 120987130 -22799325 - LTR16A LTR ERVL -351 99 10 1006 194 24 0 chr12 120987408 120987619 -22798836 + MER20 DNA MER1_type 4 219 0 213 188 21 0 chr12 120987789 120987837 -22798618 + L2 LINE L2 2927 2975 -339 968 257 20 12 chr12 120987871 120988116 -22798339 - MIR SINE MIR -14 248 2 187 349 0 0 chr12 120988200 120988266 -22798189 + L2 LINE L2 3248 3313 0 1507 216 76 36 chr12 120988601 120989050 -22797405 - MLT1C LTR MaLR 0 467 1 2138 101 35 7 chr12 120989163 120989451 -22797004 - AluSg SINE Alu -14 296 1 263 256 128 34 chr12 120989455 120989572 -22796883 - MIR SINE MIR -48 214 87 349 261 7 99 chr12 120989577 120989719 -22796736 - MER5A DNA MER1_type -6 183 55 949 232 190 58 chr12 120989751 120990230 -22796225 - MLT1H1 LTR MaLR 0 555 14 2144 144 37 3 chr12 120990520 120990873 -22795582 + MLT1A1 LTR MaLR 1 365 0 351 300 39 8 chr12 120991390 120991519 -22794936 - MIR SINE MIR -63 145 35 507 260 29 98 chr12 120992021 120992267 -22794188 - L2 LINE L2 -2 3311 3083 396 103 0 0 chr12 120992290 120992348 -22794107 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 739 153 0 16 chr12 120992375 120992499 -22793956 - FLAM_C SINE Alu -21 122 1 510 277 137 19 chr12 120992509 120992908 -22793547 - L2 LINE L2 -284 3029 2542 677 242 6 34 chr12 120993270 120993448 -22793007 + MIR SINE MIR 57 229 -33 1107 247 109 50 chr12 120993480 120993922 -22792533 + MLT1H LTR MaLR 78 545 -4 1924 177 38 27 chr12 120993981 120994353 -22792102 + MLT1D LTR MaLR 10 385 -120 630 178 0 0 chr12 120994485 120994586 -22791869 - FLAM_A SINE Alu -40 102 2 540 202 0 0 chr12 120994591 120994690 -22791765 + MLT1D LTR MaLR 407 505 0 731 294 13 13 chr12 120994824 120995055 -22791400 - MIR SINE MIR 0 262 32 1460 256 57 39 chr12 120995560 120996071 -22790384 + MLT1K LTR MaLR 40 559 -29 2109 138 17 0 chr12 120996114 120996412 -22790043 - AluSx SINE Alu -9 303 1 527 243 14 21 chr12 120996417 120996561 -22789894 - LTR16C LTR ERVL 0 491 349 1678 231 42 30 chr12 120996704 120997203 -22789252 + MLT1D LTR MaLR 1 505 0 563 242 0 8 chr12 120997483 120997603 -22788852 - MER117 DNA MER1_type -47 150 32 * 900 153 82 10 chr12 120997599 120997800 -22788655 + MLT1D LTR MaLR 238 439 -66 331 309 132 40 chr12 120998052 120998204 -22788251 - MIR SINE MIR -13 249 84 2042 122 0 18 chr12 120998291 120998604 -22787851 + AluJb SINE Alu 1 308 0 414 306 81 29 chr12 120998684 120998857 -22787598 - L2 LINE L2 -2 3311 3130 1819 159 0 14 chr12 120999300 120999577 -22786878 + AluJb SINE Alu 31 303 -9 746 237 11 88 chr12 120999581 120999843 -22786612 - MER102a DNA MER1_type -15 315 74 281 228 9 69 chr12 120999903 120999994 -22786461 - MIR3 SINE MIR -47 161 74 233 271 10 10 chr12 121000236 121000332 -22786123 + CT-rich Low_complexity Low_complexity 1 96 0 236 241 12 35 chr12 121000356 121000534 -22785921 + CT-rich Low_complexity Low_complexity 1 173 0 189 74 0 0 chr12 121000899 121000926 -22785529 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 303 245 0 0 chr12 121001420 121001514 -22784941 + (TG)n Simple_repeat Simple_repeat 1 94 0 428 282 23 35 chr12 121001580 121001754 -22784701 + (CATG)n Simple_repeat Simple_repeat 1 172 0 249 312 13 0 chr12 121001728 121001805 -22784650 + (TG)n Simple_repeat Simple_repeat 1 78 0 * 291 299 7 42 chr12 121001981 121002125 -22784330 - MIR3 SINE MIR -27 181 43 662 232 34 6 chr12 121002268 121002445 -22784010 - MIR SINE MIR -24 238 57 295 161 18 0 chr12 121002688 121002744 -22783711 - MIR SINE MIR -110 152 96 430 265 77 33 chr12 121002818 121002999 -22783456 + MIR SINE MIR 60 248 -14 286 123 0 113 chr12 121003488 121003691 -22782764 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 349 158 22 44 chr12 121003717 121003900 -22782555 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 307 261 0 0 chr12 121003905 121004198 -22782257 + CT-rich Low_complexity Low_complexity 1 293 0 33 43 0 0 chr12 121004303 121004350 -22782105 + GC_rich Low_complexity Low_complexity 1 47 0 456 162 26 31 chr12 121004910 121005037 -22781418 + MIR SINE MIR 64 187 -62 226 269 0 0 chr12 121005160 121005212 -22781243 + MER45 DNA AcHobo 1529 1580 -1 329 287 41 33 chr12 121005456 121005578 -22780877 - MIR SINE MIR -107 155 33 1912 161 0 0 chr12 121006108 121006382 -22780073 + AluSx SINE Alu 31 304 -8 186 340 0 72 chr12 121006445 121006542 -22779913 - L2 LINE L2 -35 3237 3148 2495 84 0 3 chr12 121006568 121006876 -22779579 + AluSq SINE Alu 1 307 -6 1044 191 17 22 chr12 121007025 121007256 -22779199 - MIR SINE MIR -17 245 16 212 241 0 19 chr12 121007720 121007774 -22778681 + (CTGGGG)n Simple_repeat Simple_repeat 1 53 0 1459 160 13 4 chr12 121008150 121008381 -22778074 - AluJo SINE Alu -30 282 50 819 201 16 63 chr12 121008385 121008574 -22777881 - AluJo SINE Alu -132 180 1 414 359 38 0 chr12 121009082 121009291 -22777164 - MIR SINE MIR -11 251 35 407 252 34 25 chr12 121009309 121009428 -22777027 - MIR SINE MIR -115 147 28 194 174 43 0 chr12 121009508 121009554 -22776901 + MIR SINE MIR 119 166 -96 228 227 0 0 chr12 121009581 121009625 -22776830 + L2 LINE L2 2929 2972 -300 1222 189 67 47 chr12 121009673 121009927 -22776528 - AluJo SINE Alu -53 259 1 1829 143 10 23 chr12 121010226 121010527 -22775928 - AluJo SINE Alu -1 311 15 607 282 29 83 chr12 121010604 121010916 -22775539 - L2 LINE L2 -49 3223 2929 346 244 34 80 chr12 121010942 121011118 -22775337 - MIR SINE MIR -93 169 2 2320 112 0 0 chr12 121011140 121011443 -22775012 + AluSx SINE Alu 1 303 -9 1321 263 56 32 chr12 121011513 121012067 -22774388 - MLT1K LTR MaLR 0 588 87 2428 112 0 0 chr12 121012146 121012458 -22773997 + AluSx SINE Alu 1 312 0 203 258 32 105 chr12 121012674 121012798 -22773657 + MIR SINE MIR 109 223 -39 190 403 65 0 chr12 121012816 121012940 -22773515 - MIR SINE MIR -110 152 21 524 227 162 0 chr12 121013292 121013477 -22772978 - MIR SINE MIR -14 248 34 367 215 0 13 chr12 121013591 121013670 -22772785 + MER96 DNA MER1_type? 83 160 -15 324 277 12 0 chr12 121013601 121013684 -22772771 - MER96 DNA MER1_type? -91 84 1 * 215 21 106 0 chr12 121013685 121013732 -22772723 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 201 129 0 0 chr12 121013748 121013779 -22772676 - L2 LINE L2 -5 3267 3237 946 281 88 32 chr12 121013781 121014212 -22772243 - LTR16A1 LTR ERVL -2 455 1 261 242 121 30 chr12 121014281 121014380 -22772075 - MIR SINE MIR -48 214 107 388 270 31 37 chr12 121014791 121014954 -22771501 - MIR SINE MIR -43 219 58 314 285 98 24 chr12 121015092 121015215 -22771240 + MIR SINE MIR 5 136 -126 2738 7 0 0 chr12 121015317 121015644 -22770811 - AluYb8 SINE Alu 0 327 1 184 115 0 0 chr12 121015958 121015984 -22770471 - MIR SINE MIR -117 145 120 309 26 0 0 chr12 121016008 121016046 -22770409 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1012 185 87 95 chr12 121016299 121016645 -22769810 - MER2 DNA MER2_type 0 344 2 460 337 123 0 chr12 121016663 121016850 -22769605 - MIR SINE MIR -21 241 32 194 194 30 60 chr12 121017450 121017517 -22768938 - L2 LINE L2 -16 3256 3192 329 277 27 9 chr12 121017539 121017651 -22768804 + L2 LINE L2 2641 2754 -560 1196 204 120 92 chr12 121017657 121018169 -22768286 + MLT1H LTR MaLR 35 409 0 310 109 0 0 chr12 121018346 121018392 -22768063 + L2 LINE L2 3268 3313 0 457 340 75 25 chr12 121018408 121018704 -22767751 - L2 LINE L2 -73 3199 2884 2250 121 0 0 chr12 121018704 121019052 -22767403 + AluSg SINE Alu 1 310 0 457 340 75 25 chr12 121019052 121019073 -22767382 - L2 LINE L2 -388 2884 2866 345 224 24 0 chr12 121019589 121019674 -22766781 + MER117 DNA MER1_type 106 192 -5 1036 182 33 33 chr12 121020073 121020287 -22766168 + MER58A DNA MER1_type 1 214 -10 485 293 89 0 chr12 121020303 121020460 -22765995 - MIR SINE MIR -41 221 51 566 184 151 28 chr12 121020653 121020832 -22765623 - MIR SINE MIR -16 246 46 249 216 0 0 chr12 121020996 121021047 -22765408 - MIR SINE MIR -110 152 102 261 180 0 0 chr12 121022063 121022113 -22764342 + (CA)n Simple_repeat Simple_repeat 2 51 0 644 261 80 0 chr12 121022119 121022295 -22764160 + MIR SINE MIR 48 237 -25 218 31 0 31 chr12 121022408 121022440 -22764015 + (CA)n Simple_repeat Simple_repeat 2 32 0 557 274 63 23 chr12 121022510 121022685 -22763770 + MIR SINE MIR 81 262 0 1552 155 64 39 chr12 121023097 121023196 -22763259 + Charlie1 DNA MER1_type 2345 2440 -321 1974 156 3 16 chr12 121023196 121023510 -22762945 + AluJb SINE Alu 3 312 0 1552 155 64 39 chr12 121023510 121023577 -22762878 + Charlie1 DNA MER1_type 2440 2504 -257 1854 88 0 4 chr12 121023577 121023803 -22762652 - AluSx SINE Alu -87 225 1 1552 155 64 39 chr12 121023803 121024042 -22762413 + Charlie1 DNA MER1_type 2504 2761 0 316 289 96 26 chr12 121025386 121025542 -22760913 - LTR33 LTR ERVL -49 472 306 609 233 42 8 chr12 121025544 121025752 -22760703 + MER106B DNA MER1_type 1 1037 -22 1930 169 16 0 chr12 121025765 121026072 -22760383 + AluJb SINE Alu 1 312 0 387 364 92 15 chr12 121026094 121026487 -22759968 + HAL1 LINE L1 880 1302 -1205 366 190 9 36 chr12 121026509 121026626 -22759829 - AluS SINE Alu -243 57 2 626 231 99 13 chr12 121026693 121027059 -22759396 - L1ME3 LINE L1 0 6162 5652 2205 131 3 6 chr12 121027190 121027503 -22758952 + AluSx SINE Alu 1 312 0 430 149 0 0 chr12 121027971 121028038 -22758417 - AluJ/FLAM SINE Alu -245 67 1 2343 105 30 16 chr12 121028261 121028631 -22757824 - THE1C LTR MaLR 0 375 1 288 258 65 0 chr12 121029673 121029766 -22756689 - MLT1L LTR MaLR -10 605 507 2323 115 0 0 chr12 121029804 121030108 -22756347 - AluSx SINE Alu -8 304 1 283 230 39 147 chr12 121030136 121030302 -22756153 - MLT1L LTR MaLR -224 391 249 2097 120 13 28 chr12 121030302 121030619 -22755836 - AluSx SINE Alu 0 312 1 283 230 39 147 chr12 121030619 121030656 -22755799 - MLT1L LTR MaLR -366 249 210 427 268 29 62 chr12 121030916 121031125 -22755330 + L2 LINE L2 2899 3100 -213 202 216 0 0 chr12 121031394 121031431 -22755024 + (CA)n Simple_repeat Simple_repeat 1 37 0 195 338 39 0 chr12 121031853 121031930 -22754525 + L2 LINE L2 3122 3201 -71 214 106 43 0 chr12 121034149 121034196 -22752259 + GA-rich Low_complexity Low_complexity 1 49 0 257 263 53 0 chr12 121034793 121034869 -22751586 + MIR SINE MIR 101 180 -82 865 228 103 10 chr12 121034908 121035198 -22751257 - L2 LINE L2 -6 3307 2991 417 296 35 9 chr12 121035700 121035866 -22750589 + MIR SINE MIR 5 175 -63 195 158 26 0 chr12 121036739 121036777 -22749678 - MIR SINE MIR -14 248 210 496 289 0 7 chr12 121036961 121037096 -22749359 + L2 LINE L2 3180 3313 0 2305 81 0 62 chr12 121037394 121037715 -22748740 - AluY SINE Alu -10 301 1 674 281 71 0 chr12 121037845 121038041 -22748414 + MIR SINE MIR 14 223 -39 2216 52 59 0 chr12 121038122 121038394 -22748061 - AluSp SINE Alu -6 307 20 2062 119 26 26 chr12 121038750 121039053 -22747402 + AluSx SINE Alu 1 303 -9 253 308 70 47 chr12 121039315 121039487 -22746968 + L2 LINE L2 3097 3272 0 325 267 67 60 chr12 121039615 121039765 -22746690 + MIR SINE MIR 111 261 -1 591 275 44 16 chr12 121040272 121040454 -22746001 + MIR SINE MIR 16 202 -60 241 218 77 0 chr12 121040598 121040679 -22745776 - MIR SINE MIR -62 146 60 471 268 14 22 chr12 121040690 121040828 -22745627 - MIR SINE MIR -89 173 37 186 224 17 35 chr12 121042105 121042163 -22744292 + L2 LINE L2 3213 3269 -3 194 253 81 81 chr12 121042207 121042294 -22744161 - MIR SINE MIR -69 193 107 2337 119 3 3 chr12 121042391 121042703 -22743752 - AluSx SINE Alu 0 312 1 181 264 107 74 chr12 121044016 121044137 -22742318 - L2 LINE L2 -182 3090 2966 685 256 147 35 chr12 121044329 121044704 -22741751 + MLT1H LTR MaLR 133 549 0 248 271 129 45 chr12 121044735 121045045 -22741410 - L1M4 LINE L1 -3124 3022 2687 2443 119 56 17 chr12 121045163 121045394 -22741061 - MSTA LTR MaLR 0 428 173 2334 99 0 3 chr12 121045394 121045696 -22740759 - AluSc SINE Alu -2 307 7 2443 119 56 17 chr12 121045696 121045876 -22740579 - MSTA LTR MaLR -255 173 1 326 272 198 6 chr12 121046110 121046272 -22740183 + MIR SINE MIR 59 251 -11 341 273 83 2 chr12 121046686 121046856 -22739599 - MLT1D LTR MaLR -62 405 216 197 375 0 0 chr12 121047172 121047244 -22739211 + L2 LINE L2 2988 3059 -213 2016 111 20 30 chr12 121047353 121047651 -22738804 - AluSx SINE Alu -17 295 1 1035 104 8 0 chr12 121047651 121047785 -22738670 - AluSq/x SINE Alu -178 135 1 259 260 13 0 chr12 121047789 121047866 -22738589 + L2 LINE L2 3226 3303 -10 365 184 140 26 chr12 121047898 121048012 -22738443 + MLT1C LTR MaLR 8 134 -371 1618 114 138 8 chr12 121048043 121048297 -22738158 + AluSg1 SINE Alu 1 287 -22 679 222 6 35 chr12 121048297 121048459 -22737996 + MLT1C LTR MaLR 309 467 0 2148 147 0 0 chr12 121048756 121049068 -22737387 + AluJo SINE Alu 1 312 0 2579 72 3 0 chr12 121049113 121049460 -22736995 - L1PA7 LINE L1 0 6154 5807 619 264 145 4 chr12 121049591 121049833 -22736622 + MLT1J LTR MaLR 2 277 -234 236 263 84 11 chr12 121049901 121049996 -22736459 + MLT1J LTR MaLR 380 481 -30 334 256 24 0 chr12 121051070 121051152 -22735303 - MIR SINE MIR -114 148 65 200 109 254 18 chr12 121051318 121051373 -22735082 + MIR SINE MIR 84 151 -57 898 136 65 0 chr12 121051401 121051555 -22734900 - MER58A DNA MER1_type -21 203 40 2253 90 3 7 chr12 121051881 121052170 -22734285 - AluSc SINE Alu -21 288 1 2128 141 0 3 chr12 121052364 121052668 -22733787 + AluSx SINE Alu 7 309 -3 2014 148 0 6 chr12 121052746 121053057 -22733398 - AluJo SINE Alu -3 309 1 580 338 119 5 chr12 121053083 121053503 -22732952 + L2 LINE L2 2226 2693 -621 328 266 121 65 chr12 121053646 121053894 -22732561 + L2 LINE L2 3004 3306 -7 213 324 14 14 chr12 121054636 121054710 -22731745 - L2 LINE L2 -66 3206 3133 236 293 0 0 chr12 121055456 121055514 -22730941 + L2 LINE L2 3201 3258 -14 267 31 0 0 chr12 121055514 121055546 -22730909 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 979 122 15 0 chr12 121055962 121056093 -22730362 + AluSq/x SINE Alu 1 133 -180 2138 102 51 0 chr12 121056096 121056391 -22730064 + AluSx SINE Alu 1 310 -2 214 391 32 13 chr12 121056722 121056878 -22729577 - MIR SINE MIR -1 261 103 276 337 19 12 chr12 121057129 121057292 -22729163 - LTR33 LTR ERVL -339 184 45 943 111 130 6 chr12 121058300 121058462 -22727993 + MER30 DNA MER1_type 3 184 -46 254 282 188 18 chr12 121058483 121058760 -22727695 - L2 LINE L2 -290 3023 2682 462 283 19 25 chr12 121059167 121059326 -22727129 - MIR SINE MIR -80 182 25 573 216 274 0 chr12 121059758 121059911 -22726544 + AluJo SINE Alu 107 301 -11 482 323 36 16 chr12 121060217 121060409 -22726046 - MIR SINE MIR -46 216 21 411 359 81 0 chr12 121060818 121061027 -22725428 - MIR SINE MIR -35 227 2 303 294 11 43 chr12 121061529 121061713 -22724742 + GA-rich Low_complexity Low_complexity 1 178 0 193 268 18 18 chr12 121062028 121062084 -22724371 + L2 LINE L2 3217 3272 0 383 290 131 0 chr12 121062306 121062451 -22724004 - MIR SINE MIR -79 183 20 193 250 65 65 chr12 121062747 121062839 -22723616 + L2 LINE L2 3187 3278 -35 208 224 41 0 chr12 121062858 121062907 -22723548 + MIR SINE MIR 82 132 -76 288 290 14 0 chr12 121063242 121063311 -22723144 + L2 LINE L2 3227 3296 -17 956 265 161 18 chr12 121063875 121064562 -22721893 + L2 LINE L2 2510 3311 -2 233 136 258 0 chr12 121064801 121064867 -22721588 + MIR SINE MIR 114 196 -66 671 215 75 51 chr12 121065938 121066152 -22720303 + MIR SINE MIR 44 262 0 198 0 0 0 chr12 121066249 121066271 -22720184 + (A)n Simple_repeat Simple_repeat 1 22 0 269 279 0 0 chr12 121066358 121066426 -22720029 + Charlie8 DNA MER1_type 88 155 -2262 1664 144 76 11 chr12 121067153 121067430 -22719025 - AluSx SINE Alu -17 295 1 247 287 124 39 chr12 121067515 121067644 -22718811 + MIR SINE MIR 46 185 -77 262 241 101 25 chr12 121067650 121067729 -22718726 - L2 LINE L2 -1 3312 3228 264 310 115 18 chr12 121067829 121067942 -22718513 + MIR SINE MIR 108 231 -31 234 333 116 22 chr12 121068119 121068257 -22718198 - MIR SINE MIR -79 183 33 183 321 85 57 chr12 121068378 121068389 -22718066 + MER5A DNA MER1_type 7 20 -169 402 287 95 2 chr12 121068389 121068545 -22717910 - MER5B DNA MER1_type 0 178 19 21 0 0 0 chr12 121068718 121068739 -22717716 + GC_rich Low_complexity Low_complexity 1 21 0 382 314 37 16 chr12 121069218 121069406 -22717049 - Charlie8 DNA MER1_type -2225 192 1 2137 121 0 0 chr12 121070334 121070631 -22715824 - AluSx SINE Alu -7 305 9 1049 307 125 59 chr12 121071137 121071886 -22714569 + L2 LINE L2 2202 3094 -219 2040 117 0 23 chr12 121071886 121072186 -22714269 - AluJo SINE Alu -10 302 10 1049 307 125 59 chr12 121072186 121072408 -22714047 + L2 LINE L2 3094 3300 -13 234 0 0 0 chr12 121072408 121072434 -22714021 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 888 215 0 15 chr12 121072612 121072807 -22713648 - MER58A DNA MER1_type -3 221 30 259 359 63 19 chr12 121072946 121073105 -22713350 + MIR SINE MIR 83 248 -14 279 287 128 11 chr12 121073305 121073399 -22713056 + MIR SINE MIR 158 262 0 223 267 33 0 chr12 121074830 121074890 -22711565 - L2 LINE L2 -22 3250 3189 192 77 0 0 chr12 121074967 121074993 -22711462 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 121075065 121075090 -22711365 + (CA)n Simple_repeat Simple_repeat 1 25 0 357 24 0 0 chr12 121075140 121075182 -22711273 + (CA)n Simple_repeat Simple_repeat 2 43 0 309 51 0 0 chr12 121075229 121075268 -22711187 + (CATA)n Simple_repeat Simple_repeat 3 41 0 258 56 0 0 chr12 121075318 121075354 -22711101 + (CA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr12 121075396 121075428 -22711027 + (CA)n Simple_repeat Simple_repeat 2 33 0 347 343 83 18 chr12 121075608 121075777 -22710678 - MIR SINE MIR -13 249 70 513 204 9 9 chr12 121075859 121075967 -22710488 + MIR SINE MIR 51 158 -104 2108 168 53 32 chr12 121075984 121076459 -22709996 - MER6A DNA MER2_type -26 579 95 384 206 31 31 chr12 121076642 121076739 -22709716 - MER6A DNA MER2_type -477 128 32 693 291 4 5 chr12 121077619 121077834 -22708621 + MIR SINE MIR 22 237 -25 261 236 24 144 chr12 121077875 121078064 -22708391 - MIR SINE MIR -65 143 12 539 311 82 26 chr12 121078645 121079060 -22707395 + LTR33 LTR ERVL 5 442 -79 285 333 92 7 chr12 121079266 121079419 -22707036 + MIR SINE MIR 63 228 -34 2363 89 0 3 chr12 121079561 121079874 -22706581 - AluSx SINE Alu 0 312 1 191 273 55 0 chr12 121079938 121079993 -22706462 + MIR SINE MIR 29 86 -176 336 299 47 19 chr12 121080103 121080210 -22706245 + MIR SINE MIR 97 206 -56 513 281 54 88 chr12 121080674 121081084 -22705371 - L2 LINE L2 -23 3249 2854 248 254 92 23 chr12 121081975 121082105 -22704350 + L2 LINE L2 2832 2970 -302 387 280 150 0 chr12 121082497 121082690 -22703765 - LTR33 LTR ERVL -297 224 3 1182 172 76 8 chr12 121083591 121083853 -22702602 - L1MB8 LINE L1 -1 6177 5898 576 313 71 8 chr12 121083960 121084200 -22702255 + MIR SINE MIR 8 262 0 1518 173 88 54 chr12 121084528 121084878 -22701577 + MLT1C LTR MaLR 36 403 -64 1823 158 7 0 chr12 121084878 121085162 -22701293 - AluJo SINE Alu -26 286 1 1518 173 88 54 chr12 121085162 121085221 -22701234 + MLT1C LTR MaLR 403 459 -8 770 291 94 0 chr12 121086115 121086349 -22700106 + MIR SINE MIR 7 262 0 346 307 29 7 chr12 121087970 121088107 -22698348 + LTR33 LTR ERVL 44 183 -338 180 240 20 20 chr12 121089018 121089068 -22697387 + L2 LINE L2 3238 3287 -26 279 346 65 46 chr12 121089695 121089848 -22696607 + MIR SINE MIR 90 245 -17 33 0 0 0 chr12 121089884 121089917 -22696538 + AT_rich Low_complexity Low_complexity 1 33 0 2142 95 7 3 chr12 121089917 121090211 -22696244 + AluSx SINE Alu 1 295 -17 312 399 32 0 chr12 121090802 121090960 -22695495 - MIR SINE MIR -31 231 69 393 305 128 0 chr12 121092221 121092385 -22694070 + MIR SINE MIR 22 206 -56 710 268 57 10 chr12 121094949 121095158 -22691297 - MIR SINE MIR -30 232 14 334 344 107 0 chr12 121095457 121095588 -22690867 - MIR SINE MIR -16 246 102 203 296 0 57 chr12 121096054 121096142 -22690313 - MIR3 SINE MIR -20 188 106 281 342 62 51 chr12 121098784 121099059 -22687396 + L2 LINE L2 2994 3271 -1 317 303 134 11 chr12 121099173 121099304 -22687151 - MIR SINE MIR -51 157 16 360 0 0 0 chr12 121099624 121099664 -22686791 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 109 0 0 chr12 121099695 121099741 -22686714 + (GA)n Simple_repeat Simple_repeat 1 46 0 280 305 19 19 chr12 121100148 121100253 -22686202 + L3b LINE CR1 1282 1386 -197 284 310 120 0 chr12 121100353 121100495 -22685960 - MIR3 SINE MIR -39 169 11 264 30 0 0 chr12 121101354 121101387 -22685068 + (TG)n Simple_repeat Simple_repeat 1 33 0 288 301 32 11 chr12 121102133 121102226 -22684229 - MIR SINE MIR -81 181 87 218 351 32 0 chr12 121102245 121102339 -22684116 - MIR SINE MIR -145 117 21 871 336 76 19 chr12 121103163 121103724 -22682731 + L2 LINE L2 2710 3313 0 225 281 18 0 chr12 121104680 121104737 -22681718 + MIR SINE MIR 50 107 -101 433 250 188 7 chr12 121104747 121104891 -22681564 + MER5A DNA MER1_type 18 187 -2 422 296 38 6 chr12 121104891 121105050 -22681405 - Charlie8 DNA MER1_type -2171 246 83 265 242 53 38 chr12 121105656 121105788 -22680667 - Charlie7 DNA MER1_type -25 2587 2454 1601 163 7 28 chr12 121105788 121106070 -22680385 + AluSx SINE Alu 1 276 -36 216 0 0 0 chr12 121106077 121106101 -22680354 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 421 354 49 18 chr12 121106191 121106417 -22680038 - MIR SINE MIR -9 253 21 363 282 38 15 chr12 121106641 121106772 -22679683 + MER103 DNA DNA 16 149 -17 224 210 358 0 chr12 121107040 121107121 -22679334 + MIR SINE MIR 35 144 -118 714 236 168 0 chr12 121109585 121109776 -22676679 - MER58A DNA MER1_type 0 224 2 21 36 0 0 chr12 121109959 121109987 -22676468 + GC_rich Low_complexity Low_complexity 1 28 0 2717 37 0 186 chr12 121110038 121110844 -22675611 + SVA Other Other 393 866 -520 6905 58 14 52 chr12 121110860 121111852 -22674603 + SVA Other Other 433 1386 0 280 224 0 131 chr12 121112323 121112430 -22674025 + L2 LINE L2 3221 3313 0 364 297 31 8 chr12 121114518 121114646 -22671809 + MIR SINE MIR 117 247 -15 1919 174 7 0 chr12 121114658 121114968 -22671487 + AluJb SINE Alu 1 312 0 257 203 47 31 chr12 121115698 121115762 -22670693 + MLT1I LTR MaLR 345 409 0 774 275 28 5 chr12 121116084 121116302 -22670153 + MER58A DNA MER1_type 2 224 0 360 0 0 0 chr12 121116782 121116822 -22669633 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr12 121117577 121117600 -22668855 + AT_rich Low_complexity Low_complexity 1 23 0 427 242 31 37 chr12 121118237 121118335 -22668120 + MER53 DNA DNA 23 121 -68 216 0 0 0 chr12 121118335 121118359 -22668096 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 427 242 31 37 chr12 121118359 121118421 -22668034 + MER53 DNA DNA 121 182 -7 348 119 0 0 chr12 121121177 121121236 -22665219 + (GA)n Simple_repeat Simple_repeat 1 59 0 553 231 56 7 chr12 121121752 121121895 -22664560 - MIR SINE MIR -111 151 2 4929 209 87 35 chr12 121121943 121122146 -22664309 + L1MC4 LINE L1 6487 6678 -1364 1658 174 3 30 chr12 121122146 121122444 -22664011 + AluJo SINE Alu 5 294 -18 324 0 0 0 chr12 121122448 121122484 -22663971 + (CA)n Simple_repeat Simple_repeat 2 37 0 4929 209 87 35 chr12 121122484 121122505 -22663950 + L1MC4 LINE L1 6680 6698 -1344 935 133 78 87 chr12 121122505 121122723 -22663732 + MER20 DNA MER1_type 4 219 0 4929 209 87 35 chr12 121122723 121123971 -22662484 + L1MC4 LINE L1 6698 8041 -1 2369 75 0 10 chr12 121124017 121124312 -22662143 - AluY SINE Alu -11 300 9 1815 165 0 0 chr12 121124315 121124582 -22661873 - AluJb SINE Alu -45 267 1 335 23 23 0 chr12 121124812 121124856 -22661599 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1034 228 45 14 chr12 121125137 121125427 -22661028 + MER58B DNA MER1_type 43 341 0 317 260 8 81 chr12 121125441 121125504 -22660951 - MER5B DNA MER1_type -6 172 121 2405 87 7 3 chr12 121125504 121125814 -22660641 + AluY SINE Alu 1 311 0 317 260 8 81 chr12 121125814 121125873 -22660582 - MER5B DNA MER1_type -57 121 59 1706 188 0 7 chr12 121125878 121126171 -22660284 - AluJb SINE Alu -21 291 1 229 260 96 32 chr12 121126686 121126867 -22659588 - MIR SINE MIR -46 216 21 * 352 341 93 22 chr12 121126804 121127030 -22659425 + MIR SINE MIR 8 249 -13 371 252 122 0 chr12 121127052 121127191 -22659264 + MER20B DNA MER1_type 1 156 -627 761 187 47 0 chr12 121127300 121127450 -22659005 - MER20 DNA MER1_type -62 157 1 223 25 50 25 chr12 121127800 121127840 -22658615 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr12 121128292 121128314 -22658141 + AT_rich Low_complexity Low_complexity 1 22 0 1788 143 3 50 chr12 121128951 121129252 -22657203 - AluJo SINE Alu -25 287 1 436 252 79 29 chr12 121130346 121130485 -22655970 + MIR SINE MIR 20 165 -97 407 233 92 31 chr12 121130977 121131140 -22655315 - L1ME4a LINE L1 0 6121 5949 1729 144 74 25 chr12 121131176 121131460 -22654995 - AluJo SINE Alu -14 298 1 567 120 0 11 chr12 121131487 121131579 -22654876 - AluJ/FLAM SINE Alu -220 92 2 531 289 11 32 chr12 121131682 121131872 -22654583 - L1ME4a LINE L1 -347 5774 5589 707 222 22 93 chr12 121131872 121132097 -22654358 - MER3 DNA MER1_type 0 209 1 307 180 90 45 chr12 121134001 121134090 -22652365 + L1MC3 LINE L1 6569 6661 -1124 251 228 0 0 chr12 121134091 121134148 -22652307 + (TA)n Simple_repeat Simple_repeat 2 58 0 516 127 13 0 chr12 121135006 121135085 -22651370 - MER119 DNA MER1_type -49 534 455 491 278 63 0 chr12 121135086 121135212 -22651243 - MER119 DNA MER1_type -449 134 1 363 213 107 60 chr12 121135225 121135318 -22651137 - MIR SINE MIR -54 208 104 2139 138 10 0 chr12 121135318 121135615 -22650840 - AluSx SINE Alu -12 300 1 363 213 107 60 chr12 121135615 121135671 -22650784 - MIR SINE MIR -158 104 52 761 189 0 0 chr12 121135680 121135812 -22650643 + FLAM_A SINE Alu 1 132 -1 309 217 0 0 chr12 121135831 121135891 -22650564 + MER91B DNA MER1_type 1 60 -130 21 36 0 0 chr12 121137144 121137172 -22649283 + AT_rich Low_complexity Low_complexity 1 28 0 437 264 43 55 chr12 121137272 121137435 -22649020 - MIR3 SINE MIR -12 196 36 183 244 0 0 chr12 121137574 121137615 -22648840 - MIR SINE MIR -57 151 111 224 247 13 78 chr12 121137746 121137823 -22648632 + L2 LINE L2 3233 3304 -9 443 222 56 0 chr12 121138532 121138640 -22647815 - MER117 DNA MER1_type -53 144 31 322 297 102 8 chr12 121138655 121138783 -22647672 - MIR3 SINE MIR -50 158 19 273 75 0 0 chr12 121139636 121139676 -22646779 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 2190 104 0 21 chr12 121139676 121139964 -22646491 - AluSx SINE Alu -30 282 1 240 305 12 24 chr12 121139965 121140047 -22646408 - L3 LINE CR1 -69 1508 1428 1592 166 65 172 chr12 121140094 121140469 -22645986 - L1MD1 LINE L1 -1 6241 5960 1975 146 17 7 chr12 121140469 121140771 -22645684 + AluJo SINE Alu 1 305 -7 1592 166 65 172 chr12 121140771 121141029 -22645426 - L1MD1 LINE L1 -282 5960 5676 1028 211 13 8 chr12 121141035 121141272 -22645183 - L1MB8 LINE L1 -4 6174 5937 475 125 14 0 chr12 121141273 121141345 -22645110 + MER2 DNA MER2_type 7 79 -266 237 259 0 0 chr12 121141352 121141406 -22645049 + MER2 DNA MER2_type 282 335 -10 1330 227 178 16 chr12 121141419 121141831 -22644624 - L1MB8 LINE L1 -267 5917 5436 248 346 28 55 chr12 121142096 121142313 -22644142 - L3 LINE CR1 -615 962 752 344 272 150 0 chr12 121142486 121142633 -22643822 + MIR SINE MIR 20 188 -74 316 268 0 109 chr12 121143106 121143180 -22643275 + MER5A DNA MER1_type 66 120 -69 1904 166 0 0 chr12 121143180 121143470 -22642985 - AluSx SINE Alu -22 290 1 316 268 0 109 chr12 121143470 121143533 -22642922 + MER5A DNA MER1_type 120 188 -1 264 236 0 0 chr12 121143557 121143612 -22642843 + L2 LINE L2 3213 3267 -5 * 284 287 35 23 chr12 121143599 121143686 -22642769 + MIR SINE MIR 77 164 -98 215 164 16 0 chr12 121143822 121143883 -22642572 + GA-rich Low_complexity Low_complexity 2 63 0 258 32 0 0 chr12 121143883 121143914 -22642541 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 357 24 0 0 chr12 121143913 121143955 -22642500 + (GA)n Simple_repeat Simple_repeat 2 43 0 802 250 189 7 chr12 121144068 121144364 -22642091 - LTR16C LTR ERVL 0 491 142 634 126 0 17 chr12 121144702 121144821 -22641634 + (GGGA)n Simple_repeat Simple_repeat 2 118 0 474 269 84 24 chr12 121144822 121144989 -22641466 - MIR SINE MIR -17 245 69 440 213 221 7 chr12 121145121 121145257 -22641198 + MER5A DNA MER1_type 25 189 0 25 31 0 0 chr12 121145624 121145656 -22640799 + AT_rich Low_complexity Low_complexity 1 32 0 486 342 79 0 chr12 121146071 121146311 -22640144 + MIR SINE MIR 4 262 0 774 307 70 0 chr12 121146392 121146636 -22639819 - MIR SINE MIR 0 262 2 639 158 22 25 chr12 121146672 121146912 -22639543 + GA-rich Low_complexity Low_complexity 1 239 0 212 226 183 32 chr12 121146971 121147064 -22639391 + MIR SINE MIR 148 254 -8 257 245 47 47 chr12 121147224 121147330 -22639125 - MIR SINE MIR -109 153 48 247 229 0 0 chr12 121147453 121147501 -22638954 - L2 LINE L2 -7 3306 3259 735 281 93 30 chr12 121147629 121147963 -22638492 - MLT1I LTR MaLR 0 409 55 282 326 16 8 chr12 121148084 121148213 -22638242 + (CTAGGG)n Simple_repeat Simple_repeat 2 131 0 223 423 6 0 chr12 121148149 121148312 -22638143 + (CTGGGG)n Simple_repeat Simple_repeat 5 168 0 * 445 291 8 0 chr12 121149257 121149391 -22637064 + MIR3 SINE MIR 33 167 -41 302 278 81 46 chr12 121149442 121149615 -22636840 + L2 LINE L2 3122 3300 -13 1642 154 79 7 chr12 121149621 121149900 -22636555 + AluSg SINE Alu 1 299 -11 912 251 140 23 chr12 121149951 121150680 -22635775 + L2 LINE L2 2527 3313 0 996 188 0 0 chr12 121150721 121150881 -22635574 - FRAM SINE Alu -16 160 1 180 0 0 0 chr12 121150896 121150916 -22635539 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 705 219 12 12 chr12 121150918 121151082 -22635373 + AluJo SINE Alu 2 165 -147 933 139 35 14 chr12 121151090 121151234 -22635221 - AluJo/FRAM SINE Alu -14 298 152 509 181 114 0 chr12 121151234 121151339 -22635116 - FRAM SINE Alu -59 117 1 2015 117 0 0 chr12 121151361 121151618 -22634837 + AluSx SINE Alu 1 257 -55 294 236 28 0 chr12 121152044 121152116 -22634339 - L3b LINE CR1 -193 1390 1317 594 271 89 23 chr12 121152186 121152400 -22634055 + MIR SINE MIR 28 255 -7 1099 168 0 0 chr12 121152424 121152597 -22633858 + FRAM SINE Alu 1 173 -3 214 245 0 0 chr12 121152608 121152657 -22633798 + MIR SINE MIR 166 214 -48 324 229 0 0 chr12 121153129 121153212 -22633243 + CT-rich Low_complexity Low_complexity 1 83 0 1795 162 36 17 chr12 121153621 121153923 -22632532 + AluJo SINE Alu 1 308 -4 458 209 85 8 chr12 121153943 121154072 -22632383 + MIR SINE MIR 76 214 -48 211 219 187 58 chr12 121154149 121154304 -22632151 + L2 LINE L2 2886 3060 -212 567 62 0 0 chr12 121155318 121155398 -22631057 + (TC)n Simple_repeat Simple_repeat 2 81 0 713 206 0 0 chr12 121155399 121155525 -22630930 + AluJb SINE Alu 119 244 -68 235 327 78 33 chr12 121156173 121156419 -22630036 + L2 LINE L2 2789 3061 -211 342 242 18 96 chr12 121156559 121156596 -22629859 + MIR SINE MIR 8 46 -216 1702 210 119 37 chr12 121156596 121157143 -22629312 - MLT1G1 LTR MaLR -3 592 1 342 242 18 96 chr12 121157143 121157276 -22629179 + MIR SINE MIR 46 196 -66 2457 94 0 0 chr12 121157276 121157583 -22628872 + AluSg SINE Alu 1 307 -3 342 242 18 96 chr12 121157583 121157634 -22628821 + MIR SINE MIR 196 249 -13 274 250 12 71 chr12 121157654 121157738 -22628717 + L2 LINE L2 3235 3313 0 180 0 0 0 chr12 121157784 121157804 -22628651 + (TA)n Simple_repeat Simple_repeat 2 21 0 1732 156 24 31 chr12 121157804 121158093 -22628362 - AluSx SINE Alu -25 287 1 866 284 96 24 chr12 121158349 121159265 -22627190 - L1ME3A LINE L1 -221 5949 4968 739 161 0 39 chr12 121159327 121159457 -22626998 + FLAM_C SINE Alu 2 126 -17 314 283 42 33 chr12 121159648 121159768 -22626687 + MIR3 SINE MIR 44 164 -44 661 177 9 0 chr12 121159847 121159960 -22626495 + MER81 DNA DNA 1 114 0 282 286 107 27 chr12 121159982 121160094 -22626361 + L2 LINE L2 3188 3308 -5 922 243 198 33 chr12 121160129 121160283 -22626172 + L2 LINE L2 2565 2692 -621 2070 120 90 3 chr12 121160283 121160616 -22625839 + THE1B LTR MaLR 3 364 0 922 243 198 33 chr12 121160616 121161069 -22625386 + L2 LINE L2 2692 3299 -14 911 270 63 35 chr12 121161639 121162287 -22624168 - L2 LINE L2 -5 3308 2639 510 287 36 31 chr12 121162335 121162530 -22623925 + L3 LINE CR1 1380 1575 -2 1463 244 107 7 chr12 121162628 121163059 -22623396 - MLT1K LTR MaLR 0 476 3 1815 176 86 0 chr12 121163916 121164252 -22622203 - MLT1A1 LTR MaLR 0 365 1 331 250 80 0 chr12 121164253 121164341 -22622114 + MIR SINE MIR 49 143 -119 1549 180 8 140 chr12 121164341 121164715 -22621740 + L1ME2 LINE L1 5389 5682 -482 2056 153 0 0 chr12 121164715 121165010 -22621445 + AluSx SINE Alu 1 295 -17 1549 180 8 140 chr12 121165010 121165135 -22621320 + L1ME2 LINE L1 5682 5822 -342 5776 117 24 48 chr12 121165159 121165644 -22620811 - L1MA4A LINE L1 -2 6301 5806 2452 92 0 13 chr12 121165644 121165959 -22620496 - AluSx SINE Alu -1 311 1 5776 117 24 48 chr12 121165959 121166512 -22619943 - L1ME2 LINE L1 -497 5806 5288 794 217 44 92 chr12 121166525 121166885 -22619570 + L1ME2 LINE L1 5821 6163 -1 427 265 92 13 chr12 121167509 121167569 -22618886 - L1MC4a LINE L1 -477 5825 5771 2214 122 0 0 chr12 121167569 121167863 -22618592 - AluSg SINE Alu -16 294 1 427 265 92 13 chr12 121167863 121168028 -22618427 - L1MC4a LINE L1 -531 5771 5712 180 111 0 0 chr12 121169149 121169176 -22617279 + (A)n Simple_repeat Simple_repeat 1 27 0 2489 76 0 3 chr12 121169592 121169894 -22616561 + AluSq SINE Alu 1 301 -12 212 286 0 0 chr12 121170223 121170286 -22616169 + L2 LINE L2 3209 3271 -1 205 316 0 0 chr12 121170288 121170345 -22616110 + GA-rich Low_complexity Low_complexity 4 60 0 632 295 37 16 chr12 121170359 121170549 -22615906 - MIR SINE MIR -6 256 63 385 250 242 0 chr12 121170549 121170677 -22615778 - MIR SINE MIR -102 160 2 586 289 90 9 chr12 121171357 121171568 -22614887 - MIR SINE MIR -21 241 14 364 324 34 57 chr12 121171567 121171743 -22614712 + L2 LINE L2 3097 3268 -4 * 1036 114 11 0 chr12 121171748 121171783 -22614672 + (GGAA)n Simple_repeat Simple_repeat 1 213 0 1036 114 11 0 chr12 121171783 121171959 -22614496 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 208 73 0 49 chr12 121172277 121172318 -22614137 + (TA)n Simple_repeat Simple_repeat 1 39 0 382 152 51 42 chr12 121172320 121172437 -22614018 + L1MC4 LINE L1 1996 6983 -1339 205 105 26 26 chr12 121172441 121172479 -22613976 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 360 160 32 75 chr12 121172481 121172575 -22613880 + L1MC4 LINE L1 6614 6703 -1339 339 264 178 39 chr12 121172595 121172750 -22613705 + MIR SINE MIR 28 200 -62 467 267 107 15 chr12 121172862 121173068 -22613387 + MIR SINE MIR 17 241 -21 1841 175 14 0 chr12 121173438 121173730 -22612725 + AluJo SINE Alu 2 297 -15 2532 96 34 6 chr12 121173750 121174104 -22612351 - THE1B LTR MaLR 0 364 1 374 268 169 54 chr12 121174108 121174403 -22612052 - MLT1H LTR MaLR -113 436 108 31 0 0 24 chr12 121174612 121174636 -22611819 + AT_rich Low_complexity Low_complexity 1 25 -16 2228 90 9 27 chr12 121174636 121174821 -22611634 - L1MA2 LINE L1 0 6304 6126 2252 100 10 3 chr12 121174821 121175120 -22611335 + AluSx SINE Alu 1 301 -11 2228 90 9 27 chr12 121175120 121175268 -22611187 - L1MA2 LINE L1 -178 6126 5977 31 0 0 24 chr12 121175268 121175285 -22611170 + AT_rich Low_complexity Low_complexity 25 41 0 525 313 67 10 chr12 121175348 121175543 -22610912 + MIR SINE MIR 29 234 -28 262 244 77 26 chr12 121175961 121176039 -22610416 - L2 LINE L2 -5 3308 3227 1145 233 26 0 chr12 121176200 121176471 -22609984 - LTR16A1 LTR ERVL -12 445 168 427 318 144 5 chr12 121176727 121176928 -22609527 + MIR SINE MIR 14 242 -20 183 238 0 24 chr12 121176943 121176985 -22609470 - MIR SINE MIR -136 72 32 318 274 125 77 chr12 121177141 121177309 -22609146 - MIR3 SINE MIR -21 187 12 329 214 51 41 chr12 121177332 121177430 -22609025 + MIR3 SINE MIR 93 191 -17 229 191 0 0 chr12 121177554 121177596 -22608859 - MIR SINE MIR -115 147 106 712 247 134 34 chr12 121178295 121178623 -22607832 + LTR16A1 LTR ERVL 97 457 0 324 234 170 43 chr12 121179535 121179676 -22606779 - L2 LINE L2 -2 3311 3153 636 195 8 8 chr12 121179846 121179969 -22606486 - L2 LINE L2 -9 3304 3182 508 304 150 49 chr12 121180318 121180644 -22605811 + L2 LINE L2 2914 3272 0 502 197 51 29 chr12 121180743 121180880 -22605575 + MER58B DNA MER1_type 201 340 -1 445 179 168 0 chr12 121180916 121181011 -22605444 + MIR SINE MIR 119 229 -33 383 284 19 7 chr12 121181307 121181462 -22604993 + (CA)n Simple_repeat Simple_repeat 1 157 0 665 279 47 34 chr12 121181936 121182169 -22604286 + MIR SINE MIR 2 237 -25 330 279 11 0 chr12 121182445 121182542 -22603913 + MIR SINE MIR 41 138 -70 2925 148 43 13 chr12 121182607 121183163 -22603292 - L1MA4 LINE L1 0 6300 5728 181 111 0 0 chr12 121183171 121183198 -22603257 - MIR SINE MIR -118 144 118 591 222 243 30 chr12 121183250 121183583 -22602872 + L2 LINE L2 2910 3313 0 2398 153 23 8 chr12 121183695 121184207 -22602248 + L1MB5 LINE L1 5567 6174 0 295 258 0 16 chr12 121184288 121184397 -22602058 + MIR SINE MIR 47 150 -61 1502 235 86 79 chr12 121184606 121185177 -22601278 - MLT1G1 LTR MaLR -8 587 13 748 285 102 32 chr12 121185323 121185726 -22600729 - MLT1K LTR MaLR -89 499 69 2018 111 27 27 chr12 121185969 121186267 -22600188 + AluSx SINE Alu 1 298 -14 1157 203 45 19 chr12 121186332 121186642 -22599813 - MER33 DNA MER1_type -6 318 1 286 281 302 0 chr12 121186658 121186797 -22599658 + MER5A DNA MER1_type 9 189 0 362 202 168 0 chr12 121186807 121186874 -22599581 + MER3 DNA MER1_type 70 124 -85 2310 129 0 0 chr12 121186874 121187185 -22599270 - AluSx SINE Alu -1 311 1 362 202 168 0 chr12 121187185 121187236 -22599219 + MER3 DNA MER1_type 124 208 -1 1476 132 0 41 chr12 121187276 121187518 -22598937 - AluJo SINE Alu -5 307 76 233 328 129 0 chr12 121187600 121187716 -22598739 - MIR SINE MIR -69 193 63 269 26 0 26 chr12 121187758 121187797 -22598658 + (TG)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 121187796 121187816 -22598639 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 1380 118 11 0 chr12 121187816 121188002 -22598453 - AluSg/x SINE Alu -40 272 85 528 242 23 62 chr12 121188002 121188191 -22598264 - MIR SINE MIR -59 203 20 579 283 133 0 chr12 121188960 121189140 -22597315 - MIR SINE MIR -12 250 47 321 234 65 110 chr12 121189195 121189349 -22597106 + MIR SINE MIR 46 192 -70 370 270 123 31 chr12 121189543 121189706 -22596749 - MIR SINE MIR -56 206 29 234 0 0 0 chr12 121189897 121189923 -22596532 + (CTG)n Simple_repeat Simple_repeat 3 28 0 194 212 0 0 chr12 121190586 121190619 -22595836 - MIR SINE MIR -12 250 218 589 169 196 14 chr12 121190633 121190781 -22595674 + MER5A DNA MER1_type 9 183 -6 193 321 60 15 chr12 121190803 121190937 -22595518 - MIR SINE MIR -72 190 51 237 211 0 33 chr12 121191101 121191172 -22595283 - MIR SINE MIR -62 146 99 220 350 62 0 chr12 121191513 121191610 -22594845 + L3 LINE CR1 1386 1488 -89 619 181 10 8 chr12 121191640 121191780 -22594675 + MIR SINE MIR 15 152 -58 587 258 13 0 chr12 121191878 121192033 -22594422 - MER113 DNA MER1_type? -34 487 331 605 223 52 28 chr12 121192056 121192267 -22594188 - L1ME3 LINE L1 -6 6156 5941 420 20 0 0 chr12 121192267 121192316 -22594139 + (TTA)n Simple_repeat Simple_repeat 2 50 0 756 220 0 0 chr12 121192317 121192449 -22594006 - AluJb SINE Alu -51 261 130 1250 192 53 53 chr12 121192449 121192500 -22593955 - L1ME3 LINE L1 -219 5943 5893 2164 184 26 9 chr12 121192500 121192924 -22593531 - L1MB8 LINE L1 -3 6175 5745 1250 192 53 53 chr12 121192924 121193211 -22593244 - L1ME3 LINE L1 -268 5894 5605 793 192 104 68 chr12 121193213 121193521 -22592934 - MER113 DNA MER1_type? -200 321 3 320 307 18 43 chr12 121193654 121193817 -22592638 + MIR3 SINE MIR 1 159 -49 357 274 205 59 chr12 121193819 121194171 -22592284 + Charlie8 DNA MER1_type 2 389 -2028 1643 178 72 0 chr12 121194348 121194624 -22591831 - AluJo SINE Alu -16 296 1 487 250 47 34 chr12 121194760 121194908 -22591547 + MIR3 SINE MIR 42 191 -17 984 269 95 32 chr12 121195408 121195973 -22590482 + L2 LINE L2 2625 3224 -89 340 211 28 0 chr12 121196164 121196235 -22590220 - MIR SINE MIR -65 143 71 331 314 77 0 chr12 121196236 121196392 -22590063 + L2 LINE L2 2878 3045 -227 666 280 106 14 chr12 121196578 121196853 -22589602 - LTR16C LTR ERVL -104 387 88 542 184 10 0 chr12 121197147 121197245 -22589210 - MIR SINE MIR -65 143 45 279 174 88 19 chr12 121197363 121197459 -22588996 - MIR SINE MIR -56 152 46 384 217 200 8 chr12 121197622 121197742 -22588713 - MIR SINE MIR -91 171 29 245 328 180 8 chr12 121197739 121197861 -22588594 - L3 LINE CR1 -44 1533 1391 * 211 304 33 33 chr12 121197945 121198037 -22588418 - L3 LINE CR1 -206 1371 1280 273 302 69 9 chr12 121198444 121198560 -22587895 - MIR SINE MIR -127 135 13 216 0 0 0 chr12 121198963 121198987 -22587468 + (TC)n Simple_repeat Simple_repeat 1 24 0 359 309 12 24 chr12 121199262 121199427 -22587028 + GA-rich Low_complexity Low_complexity 2 164 0 473 173 29 12 chr12 121199439 121199612 -22586843 + GA-rich Low_complexity Low_complexity 1 176 0 803 176 7 7 chr12 121199649 121199791 -22586664 + FLAM_C SINE Alu 1 142 -1 735 44 0 0 chr12 121199819 121199910 -22586545 + (GGAA)n Simple_repeat Simple_repeat 4 94 0 207 228 0 18 chr12 121200213 121200270 -22586185 + (TA)n Simple_repeat Simple_repeat 2 57 0 216 0 0 0 chr12 121200725 121200749 -22585706 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2279 117 0 7 chr12 121200867 121201174 -22585281 - AluSg SINE Alu -3 307 3 22 0 0 0 chr12 121201176 121201198 -22585257 + AT_rich Low_complexity Low_complexity 1 22 0 876 175 32 114 chr12 121201242 121201414 -22585041 + MER33 DNA MER1_type 1 133 -2452 1937 158 16 0 chr12 121201414 121201718 -22584737 - AluJb SINE Alu -3 309 1 876 175 32 114 chr12 121201718 121201887 -22584568 + MER33 DNA MER1_type 133 314 -10 622 250 77 39 chr12 121202227 121202435 -22584020 - MIR SINE MIR -14 248 33 512 203 164 7 chr12 121203114 121203293 -22583162 + MIR SINE MIR 45 260 -2 301 273 50 29 chr12 121203299 121203438 -22583017 + MLT1J LTR MaLR 1 142 -369 189 245 0 0 chr12 121203758 121203807 -22582648 + (TTA)n Simple_repeat Simple_repeat 2 50 0 225 298 32 11 chr12 121203874 121203968 -22582487 + CT-rich Low_complexity Low_complexity 2 97 0 673 264 10 16 chr12 121204310 121204503 -22581952 - MIR SINE MIR -68 194 3 2198 106 0 0 chr12 121204612 121204939 -22581516 - AluSx SINE Alu 0 327 1 725 189 208 5 chr12 121205060 121205272 -22581183 + MIR SINE MIR 8 262 0 419 221 107 23 chr12 121205306 121205437 -22581018 - MIR SINE MIR -47 215 74 476 311 45 11 chr12 121205575 121205752 -22580703 - MIR SINE MIR -48 214 32 200 155 17 69 chr12 121205910 121205968 -22580487 - L2 LINE L2 -188 3084 3030 364 361 6 11 chr12 121206309 121206492 -22579963 - L2 LINE L2 -174 3098 2917 655 235 77 0 chr12 121206695 121206878 -22579577 - MIR SINE MIR -2 260 64 235 306 127 37 chr12 121207032 121207166 -22579289 + L2 LINE L2 2968 3113 -159 206 335 106 37 chr12 121207508 121207669 -22578786 - MIR SINE MIR -69 193 22 208 135 19 19 chr12 121208439 121208491 -22577964 + (TG)n Simple_repeat Simple_repeat 1 52 0 231 152 0 0 chr12 121209186 121209232 -22577223 + (TG)n Simple_repeat Simple_repeat 2 47 0 339 273 62 62 chr12 121210124 121210159 -22576296 + MIR SINE MIR 40 74 -188 537 16 0 0 chr12 121210159 121210221 -22576234 + (CA)n Simple_repeat Simple_repeat 2 63 0 339 273 62 62 chr12 121210221 121210313 -22576142 + MIR SINE MIR 73 167 -95 22 0 0 0 chr12 121210313 121210335 -22576120 + AT_rich Low_complexity Low_complexity 1 22 0 286 301 39 93 chr12 121210335 121210667 -22575788 - L2 LINE L2 -33 3280 2967 292 222 22 67 chr12 121210845 121210935 -22575520 + L2 LINE L2 2665 2750 -564 607 287 15 41 chr12 121211019 121211214 -22575241 + MIR SINE MIR 17 206 -56 181 294 43 43 chr12 121211274 121211366 -22575089 - L2 LINE L2 -692 2622 2531 354 371 16 39 chr12 121211401 121211569 -22574886 + L3 LINE CR1 853 1023 -554 1961 158 7 3 chr12 121211569 121211867 -22574588 + AluJb SINE Alu 1 299 -13 354 371 16 39 chr12 121211867 121211887 -22574568 + L3 LINE CR1 1023 1042 -535 787 194 22 78 chr12 121211887 121212119 -22574336 - MER20 DNA MER1_type 0 219 1 354 371 16 39 chr12 121212119 121212185 -22574270 + L3 LINE CR1 1042 1102 -475 438 240 0 29 chr12 121212330 121212434 -22574021 + L3 LINE CR1 1390 1490 -87 1333 181 0 11 chr12 121213020 121213285 -22573170 + L1MD3 LINE L1 7734 7995 0 1372 215 34 39 chr12 121213304 121213741 -22572714 + MER113 DNA MER1_type? 12 446 -75 2338 109 0 3 chr12 121213752 121214063 -22572392 + AluSx SINE Alu 1 310 -2 828 197 83 5 chr12 121214119 121214312 -22572143 - MER3 DNA MER1_type -1 208 1 538 239 90 0 chr12 121214865 121214999 -22571456 + MIR SINE MIR 69 214 -48 898 251 53 75 chr12 121215210 121215624 -22570831 + MLT1I LTR MaLR 5 409 0 300 224 30 0 chr12 121216756 121216823 -22569632 - L2 LINE L2 -4 3268 3200 567 295 29 23 chr12 121216826 121216999 -22569456 + MIR SINE MIR 2 175 -87 228 83 83 0 chr12 121216999 121217035 -22569420 - MLT1H LTR MaLR 0 542 504 1523 195 89 12 chr12 121217146 121217484 -22568971 - MLT1H LTR MaLR -185 364 1 321 198 105 58 chr12 121217484 121217570 -22568885 + MIR SINE MIR 171 260 -2 198 0 0 0 chr12 121217635 121217657 -22568798 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 435 252 105 0 chr12 121217747 121217890 -22568565 - L1ME4a LINE L1 -271 5850 5693 764 280 170 40 chr12 121218190 121218644 -22567811 - MER68 LTR ERV1 0 562 50 533 262 41 52 chr12 121218667 121218900 -22567555 + MLT1H1 LTR MaLR 24 271 -284 333 261 0 43 chr12 121219392 121219429 -22567026 + MIR SINE MIR 124 161 -101 2286 120 3 0 chr12 121219429 121219737 -22566718 + AluSx SINE Alu 1 309 -3 333 261 0 43 chr12 121219737 121219791 -22566664 + MIR SINE MIR 161 211 -51 1694 106 13 0 chr12 121219811 121220038 -22566417 - MER30 DNA MER1_type 0 230 1 1795 199 162 33 chr12 121220038 121220550 -22565905 + MLT1E LTR MaLR 14 591 -2 311 285 24 32 chr12 121220748 121220871 -22565584 - L2 LINE L2 -52 3261 3140 290 305 182 35 chr12 121220930 121221133 -22565322 - MIR SINE MIR -16 246 14 1108 207 18 9 chr12 121221409 121221626 -22564829 + MER20 DNA MER1_type 1 219 0 861 282 41 0 chr12 121222129 121222349 -22564106 - MIR SINE MIR -12 250 22 388 196 224 9 chr12 121223409 121223516 -22562939 + MER5A DNA MER1_type 53 182 -7 874 200 60 5 chr12 121224064 121224264 -22562191 - MER20 DNA MER1_type -8 211 1 343 219 116 103 chr12 121224890 121224969 -22561486 + MIR3 SINE MIR 5 88 -120 631 174 18 0 chr12 121224969 121225078 -22561377 + MER81 DNA DNA 4 114 0 343 219 116 103 chr12 121225078 121225144 -22561311 + MIR3 SINE MIR 88 152 -56 2294 112 7 0 chr12 121225352 121225647 -22560808 - AluSx SINE Alu -14 298 2 221 284 14 40 chr12 121225802 121225876 -22560579 - L2 LINE L2 -20 3252 3181 2079 136 13 0 chr12 121226118 121226420 -22560035 - AluSq SINE Alu -7 306 1 667 279 42 38 chr12 121226515 121226752 -22559703 + MIR SINE MIR 2 239 -23 219 213 85 0 chr12 121226789 121226836 -22559619 + MER91C DNA MER1_type 58 108 -32 1648 169 0 15 chr12 121227191 121227457 -22558998 + AluJo SINE Alu 21 282 -30 195 42 0 0 chr12 121227457 121227481 -22558974 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 556 246 95 8 chr12 121227490 121227720 -22558735 - MIR SINE MIR 0 262 3 356 246 63 26 chr12 121227761 121227906 -22558549 + MIR SINE MIR 35 185 -63 593 335 40 13 chr12 121228645 121228872 -22557583 + MIR SINE MIR 23 255 -7 800 191 0 0 chr12 121229182 121229313 -22557142 + FLAM_C SINE Alu 2 132 -1 1718 142 3 113 chr12 121229317 121229654 -22556801 + AluJo SINE Alu 1 300 -2 610 248 287 15 chr12 121229997 121230545 -22555910 - L2 LINE L2 -9 3304 2620 226 339 87 9 chr12 121230609 121230724 -22555731 - MIR3 SINE MIR -76 132 9 694 245 112 0 chr12 121231073 121231269 -22555186 - MIR SINE MIR 0 262 45 788 171 16 6 chr12 121231309 121231633 -22554822 + GA-rich Low_complexity Low_complexity 1 327 0 631 173 0 0 chr12 121231670 121231780 -22554675 + FLAM_A SINE Alu 32 141 -1 479 111 0 12 chr12 121231793 121231874 -22554581 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 1237 58 23 0 chr12 121231874 121232047 -22554408 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 280 286 31 20 chr12 121233014 121233112 -22553343 - MIR SINE MIR -72 190 92 214 245 0 0 chr12 121233215 121233264 -22553191 + MIR SINE MIR 150 198 -64 308 294 0 9 chr12 121233680 121233789 -22552666 + (TA)n Simple_repeat Simple_repeat 2 109 0 536 237 105 13 chr12 121233829 121233981 -22552474 + MIR SINE MIR 76 241 -21 271 297 27 0 chr12 121234376 121234450 -22552005 + MIR SINE MIR 70 145 -63 336 102 0 0 chr12 121234493 121234542 -22551913 + (TG)n Simple_repeat Simple_repeat 1 49 0 289 225 13 66 chr12 121234797 121234948 -22551507 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 527 276 6 11 chr12 121234962 121234988 -22551467 + GA-rich Low_complexity Low_complexity 1 26 -154 1618 169 33 13 chr12 121234988 121235290 -22551165 + AluJo SINE Alu 2 309 -3 527 276 6 11 chr12 121235290 121235444 -22551011 + GA-rich Low_complexity Low_complexity 26 180 0 281 267 68 7 chr12 121236793 121236939 -22549516 - MIR3 SINE MIR -52 156 2 195 170 0 0 chr12 121237146 121237193 -22549262 + (CA)n Simple_repeat Simple_repeat 1 47 0 534 316 38 14 chr12 121237935 121238147 -22548308 + MIR SINE MIR 10 226 -36 272 262 252 28 chr12 121238307 121238414 -22548041 + L2 LINE L2 3141 3271 -1 330 206 0 39 chr12 121238484 121238586 -22547869 - MER33 DNA MER1_type 0 324 227 902 134 0 0 chr12 121238586 121238713 -22547742 - FLAM_C SINE Alu -16 127 1 896 204 19 5 chr12 121238713 121238919 -22547536 - MER33 DNA MER1_type -89 235 27 248 276 79 13 chr12 121239078 121239154 -22547301 + MER5A DNA MER1_type 33 113 -76 1215 190 43 65 chr12 121239165 121239533 -22546922 - L1MD2 LINE L1 -14 6345 5986 188 189 27 0 chr12 121239554 121239591 -22546864 + MER5A DNA MER1_type 149 186 -3 305 297 9 0 chr12 121239598 121239709 -22546746 - MER113 DNA MER1_type? -104 417 306 504 258 17 0 chr12 121239709 121239829 -22546626 + MIR SINE MIR 85 206 -56 6709 88 10 0 chr12 121240018 121241063 -22545392 + L1PA11 LINE L1 5121 6174 0 2326 95 3 0 chr12 121241432 121241726 -22544729 + AluSg SINE Alu 1 295 -15 767 204 70 0 chr12 121241974 121242146 -22544309 + MER20 DNA MER1_type 35 218 -1 254 261 156 6 chr12 121242981 121243017 -22543438 - MIR3 SINE MIR 0 208 179 2310 129 0 0 chr12 121243017 121243328 -22543127 + AluSx SINE Alu 1 311 -1 254 261 156 6 chr12 121243328 121243425 -22543030 - MIR3 SINE MIR -29 179 49 256 239 54 54 chr12 121243426 121243518 -22542937 - L2 LINE L2 0 3272 3181 965 187 61 33 chr12 121243713 121243927 -22542528 - MER58A DNA MER1_type -4 220 1 1675 151 49 21 chr12 121243936 121244220 -22542235 - AluJo SINE Alu -20 292 1 512 268 133 20 chr12 121244875 121245106 -22541349 + MIR SINE MIR 8 248 -14 217 156 0 0 chr12 121245184 121245216 -22541239 - MIR SINE MIR -112 150 119 644 286 132 29 chr12 121245275 121245637 -22540818 + LTR16A LTR ERVL 56 455 -2 615 256 0 72 chr12 121245914 121246020 -22540435 - MER5A DNA MER1_type 0 189 102 2278 107 0 0 chr12 121246020 121246309 -22540146 + AluSg SINE Alu 1 289 -21 615 256 0 72 chr12 121246309 121246397 -22540058 - MER5A DNA MER1_type -87 102 9 373 320 85 13 chr12 121246462 121246615 -22539840 + MIR SINE MIR 80 243 -19 464 222 111 43 chr12 121247797 121247959 -22538496 + MIR SINE MIR 20 192 -70 876 250 55 17 chr12 121247993 121248229 -22538226 - MIR SINE MIR 0 262 18 602 271 50 6 chr12 121249239 121249420 -22537035 - LTR16C LTR ERVL -48 443 255 243 0 0 0 chr12 121249595 121249622 -22536833 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 477 0 0 0 chr12 121249707 121249760 -22536695 + (CA)n Simple_repeat Simple_repeat 2 54 0 823 168 145 0 chr12 121250128 121250307 -22536148 + MER3 DNA MER1_type 5 209 0 695 273 110 22 chr12 121250415 121250642 -22535813 - MIR SINE MIR 0 262 16 201 342 56 56 chr12 121250776 121250937 -22535518 - L2 LINE L2 -25 3247 3087 198 143 0 0 chr12 121251397 121251432 -22535023 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr12 121251467 121251491 -22534964 + (TG)n Simple_repeat Simple_repeat 2 25 0 209 274 16 0 chr12 121251608 121251670 -22534785 + (TG)n Simple_repeat Simple_repeat 2 64 0 315 0 0 0 chr12 121251682 121251717 -22534738 + (TG)n Simple_repeat Simple_repeat 2 36 0 314 311 0 0 chr12 121252013 121252087 -22534368 + (CGTG)n Simple_repeat Simple_repeat 2 75 0 970 208 0 12 chr12 121252598 121252771 -22533684 + AluJo SINE Alu 1 171 -141 390 364 9 23 chr12 121253174 121253394 -22533061 + MIR SINE MIR 4 220 -42 1932 211 68 51 chr12 121254854 121255384 -22531071 + MLT1F1 LTR MaLR 4 567 0 952 209 19 28 chr12 121255397 121255561 -22530894 + MIR SINE MIR 46 209 -53 2012 118 45 0 chr12 121255561 121255848 -22530607 + AluSg SINE Alu 1 300 -10 952 209 19 28 chr12 121255848 121255894 -22530561 + MIR SINE MIR 209 254 -8 980 261 121 38 chr12 121256212 121256660 -22529795 + MLT1H1 LTR MaLR 70 554 -1 314 219 140 79 chr12 121256664 121256778 -22529677 - MIR SINE MIR -107 155 35 924 137 58 26 chr12 121257294 121257484 -22528971 - MER20 DNA MER1_type -1 218 23 1627 173 3 67 chr12 121257779 121258092 -22528363 - AluJb SINE Alu -14 298 6 959 229 106 67 chr12 121258095 121258557 -22527898 - LTR33 LTR ERVL -4 517 38 2134 140 7 0 chr12 121258557 121258857 -22527598 + AluSq SINE Alu 1 302 -11 493 225 55 21 chr12 121259560 121259723 -22526732 - MIR SINE MIR -57 205 34 316 296 72 40 chr12 121259898 121260050 -22526405 + MIR SINE MIR 84 240 -22 * 735 276 32 28 chr12 121260027 121260244 -22526211 - MIR SINE MIR -33 229 12 486 48 0 0 chr12 121260290 121260353 -22526102 + L1PA5 LINE L1 6079 6141 -13 225 0 0 0 chr12 121260357 121260382 -22526073 + (TA)n Simple_repeat Simple_repeat 1 25 0 851 319 64 25 chr12 121260521 121261064 -22525391 - L2 LINE L2 -6 3307 2734 1465 242 93 20 chr12 121261289 121261793 -22524662 + MLT1H LTR MaLR 7 547 -2 613 304 134 27 chr12 121262063 121262205 -22524250 - L2 LINE L2 0 3313 3188 2273 117 7 0 chr12 121262205 121262512 -22523943 + AluSx SINE Alu 1 309 -3 613 304 134 27 chr12 121262512 121262771 -22523684 - L2 LINE L2 -125 3188 2869 1020 219 89 82 chr12 121262821 121263308 -22523147 + MLT1H LTR MaLR 18 549 0 651 276 24 38 chr12 121263844 121264054 -22522401 + LTR33 LTR ERVL 8 214 -307 304 195 11 58 chr12 121264163 121264250 -22522205 + LTR33 LTR ERVL 430 512 -9 374 246 34 25 chr12 121264446 121264564 -22521891 + MLT1H LTR MaLR 230 348 -201 233 310 13 37 chr12 121264732 121264956 -22521499 + CT-rich Low_complexity Low_complexity 1 218 0 188 159 0 23 chr12 121265005 121265049 -22521406 + CT-rich Low_complexity Low_complexity 1 43 0 212 320 0 0 chr12 121265049 121265127 -22521328 + C-rich Low_complexity Low_complexity 4 81 0 481 274 126 17 chr12 121265461 121265636 -22520819 + MIR SINE MIR 63 256 -6 349 322 58 0 chr12 121265787 121265908 -22520547 - MIR SINE MIR -30 232 105 348 214 29 0 chr12 121266493 121266563 -22519892 + MIR SINE MIR 98 169 -93 610 239 14 21 chr12 121266582 121266724 -22519731 - L2 LINE L2 -1 3312 3172 297 0 0 0 chr12 121266780 121266813 -22519642 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 309 85 11 chr12 121266974 121267068 -22519387 - L2 LINE L2 -21 3292 3192 634 335 36 5 chr12 121267324 121267548 -22518907 + MLT1H LTR MaLR 23 253 -296 296 294 0 0 chr12 121267697 121267789 -22518666 + MLT1H LTR MaLR 458 549 0 682 239 128 14 chr12 121267800 121268018 -22518437 + MIR SINE MIR 20 262 0 374 172 17 180 chr12 121268184 121268260 -22518195 + MIR SINE MIR 44 87 -121 2463 97 0 0 chr12 121268260 121268571 -22517884 - AluY SINE Alu 0 311 1 374 172 17 180 chr12 121268571 121268651 -22517804 + MIR SINE MIR 87 178 -30 549 0 0 0 chr12 121268856 121268917 -22517538 + (TA)n Simple_repeat Simple_repeat 1 61 0 224 245 0 0 chr12 121269078 121269127 -22517328 + MIR SINE MIR 100 148 -114 1967 118 33 52 chr12 121269823 121270129 -22516326 - AluSx SINE Alu -12 300 1 288 0 0 0 chr12 121271451 121271483 -22514972 + (CTG)n Simple_repeat Simple_repeat 1 32 0 457 299 108 17 chr12 121271498 121271729 -22514726 - MIR SINE MIR -1 261 10 297 109 0 0 chr12 121271831 121271877 -22514578 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 657 224 18 121 chr12 121272041 121272322 -22514133 + MLT1K LTR MaLR 96 347 -241 691 160 0 32 chr12 121272344 121272469 -22513986 - FLAM_C SINE Alu 0 143 23 271 169 0 77 chr12 121272550 121272615 -22513840 + MLT1K LTR MaLR 448 507 -81 2198 95 0 3 chr12 121273823 121274108 -22512347 + AluSc SINE Alu 1 284 -25 644 291 74 71 chr12 121274697 121275134 -22511321 + L1MCa LINE L1 2219 2703 -3904 1633 235 48 56 chr12 121275252 121275852 -22510603 + MLT1E2 LTR MaLR 35 626 0 249 344 44 28 chr12 121275855 121276035 -22510420 - L3 LINE CR1 -181 1396 1214 290 332 57 37 chr12 121276153 121276440 -22510015 + L2 LINE L2 2712 3037 -235 229 222 44 0 chr12 121276476 121276521 -22509934 + L2 LINE L2 3264 3310 -3 770 293 37 29 chr12 121276605 121276878 -22509577 - MLT1I LTR MaLR -134 275 1 412 329 148 25 chr12 121276886 121277163 -22509292 + L2 LINE L2 3003 3313 0 257 267 183 30 chr12 121277368 121277499 -22508956 + MIR3 SINE MIR 32 182 -26 360 293 115 13 chr12 121277570 121277727 -22508728 - MIR SINE MIR -78 184 12 875 278 44 32 chr12 121277763 121278015 -22508440 + MIR SINE MIR 8 262 0 504 218 28 22 chr12 121278099 121278221 -22508234 - L1ME2 LINE L1 -202 5962 5837 2350 135 92 0 chr12 121278221 121278613 -22507842 + MSTA LTR MaLR 1 428 0 504 218 28 22 chr12 121278613 121278669 -22507786 - L1ME2 LINE L1 -327 5837 5783 239 178 51 19 chr12 121278694 121278768 -22507687 + (TTATA)n Simple_repeat Simple_repeat 1 71 -91 2057 124 81 35 chr12 121278768 121279116 -22507339 - THE1B LTR MaLR 0 364 1 239 178 51 19 chr12 121279116 121279198 -22507257 + (TTATA)n Simple_repeat Simple_repeat 71 162 0 389 260 30 0 chr12 121279255 121279355 -22507100 - L1ME2 LINE L1 -454 5708 5606 321 243 165 45 chr12 121279359 121279602 -22506853 - MER113 DNA MER1_type? -184 337 66 287 197 0 170 chr12 121279602 121279749 -22506706 + L1ME1 LINE L1 4877 4998 -1148 1686 154 9 66 chr12 121279749 121280068 -22506387 + AluJb SINE Alu 1 301 -11 7754 151 20 21 chr12 121280068 121280372 -22506083 + L1MC3 LINE L1 6307 6610 -1175 1888 154 0 51 chr12 121280372 121280683 -22505772 + AluJb SINE Alu 3 297 -15 7754 151 20 21 chr12 121280683 121280919 -22505536 + L1MC3 LINE L1 6610 6845 -940 432 51 0 0 chr12 121280919 121280978 -22505477 + (CA)n Simple_repeat Simple_repeat 2 60 0 7754 151 20 21 chr12 121280978 121281260 -22505195 + L1MC3 LINE L1 6845 7126 -659 1726 200 0 13 chr12 121281260 121281570 -22504885 - AluJo SINE Alu -6 306 1 7754 151 20 21 chr12 121281570 121282225 -22504230 + L1MC3 LINE L1 7126 7785 0 321 159 0 57 chr12 121282238 121282326 -22504129 + L1ME1 LINE L1 5742 5824 -340 1789 172 3 17 chr12 121282326 121282628 -22503827 + AluJo SINE Alu 1 298 -14 871 234 38 69 chr12 121282649 121283027 -22503428 + L1ME1 LINE L1 5808 6333 -1 1459 139 19 0 chr12 121283500 121283771 -22502684 - AluJb SINE Alu 0 344 70 265 254 132 48 chr12 121283809 121284037 -22502418 - MARNA DNA Mariner -42 544 298 461 248 33 41 chr12 121284091 121284212 -22502243 + L2 LINE L2 3153 3272 0 917 255 47 61 chr12 121284221 121284773 -22501682 + L2 LINE L2 2520 3057 -256 1863 170 53 23 chr12 121284835 121285234 -22501221 + L1MB5 LINE L1 5739 6149 -25 442 193 18 37 chr12 121285243 121285352 -22501103 - MER96B DNA MER1_type? -132 285 179 411 263 167 59 chr12 121285353 121285484 -22500971 + L2 LINE L2 3015 3131 -182 2029 126 13 17 chr12 121285484 121285785 -22500670 - AluSx SINE Alu -12 300 1 411 263 167 59 chr12 121285785 121285923 -22500532 + L2 LINE L2 3131 3313 0 282 95 0 0 chr12 121285925 121285967 -22500488 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 266 299 28 18 chr12 121286703 121286826 -22499629 + MIR SINE MIR 70 196 -12 * 382 188 0 0 chr12 121286815 121286879 -22499576 + MIR SINE MIR 105 168 -94 441 255 97 38 chr12 121286892 121287182 -22499273 - L1MC4 LINE L1 0 8042 7736 374 179 48 0 chr12 121287184 121287268 -22499187 + MIR SINE MIR 164 251 -11 1910 173 3 3 chr12 121287269 121287569 -22498886 - AluJb SINE Alu -12 300 1 204 40 0 0 chr12 121288413 121288438 -22498017 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 403 224 88 48 chr12 121288440 121288565 -22497890 - L2 LINE L2 -15 3298 3169 270 0 0 0 chr12 121288566 121288596 -22497859 + (TAA)n Simple_repeat Simple_repeat 2 31 0 802 233 23 0 chr12 121288600 121288776 -22497679 - MIR SINE MIR -10 252 73 483 274 141 29 chr12 121288787 121289028 -22497427 - L2 LINE L2 -168 3145 2878 5160 97 18 3 chr12 121289727 121290087 -22496368 - L1PB1 LINE L1 0 6151 5798 546 16 0 0 chr12 121290087 121290150 -22496305 + (TA)n Simple_repeat Simple_repeat 1 63 0 5160 97 18 3 chr12 121290150 121290556 -22495899 - L1PB1 LINE L1 -353 5798 5373 1907 127 27 33 chr12 121290874 121291174 -22495281 + AluSx SINE Alu 1 298 -14 979 179 52 22 chr12 121291239 121291507 -22494948 - MER33 DNA MER1_type -6 318 43 459 149 22 30 chr12 121291567 121291701 -22494754 + CT-rich Low_complexity Low_complexity 3 135 0 342 250 23 38 chr12 121292115 121292247 -22494208 + GA-rich Low_complexity Low_complexity 5 134 0 3998 136 21 17 chr12 121292479 121293305 -22493150 - THE1-int LTR MaLR -517 1063 290 205 229 125 0 chr12 121293308 121293356 -22493099 - MIR SINE MIR -110 98 45 250 354 13 0 chr12 121293640 121293719 -22492736 + L2 LINE L2 2900 2979 -334 211 333 81 11 chr12 121294592 121294679 -22491776 - MIR SINE MIR -14 248 156 1684 181 10 26 chr12 121294711 121295014 -22491441 - AluJo SINE Alu -14 298 1 1055 270 144 20 chr12 121295020 121295665 -22490790 - L2 LINE L2 -13 3259 2516 1944 153 0 19 chr12 121295679 121295993 -22490462 + AluJo SINE Alu 1 308 -4 322 260 125 10 chr12 121295994 121296090 -22490365 - MIR SINE MIR -59 149 43 841 270 51 9 chr12 121296132 121296347 -22490108 - MER58A DNA MER1_type 0 224 1 219 286 112 0 chr12 121296967 121297065 -22489390 + MIR SINE MIR 45 153 -109 302 287 0 91 chr12 121297123 121297266 -22489189 - MER5B DNA MER1_type -47 131 2 840 154 71 18 chr12 121297290 121297459 -22488996 + MER20 DNA MER1_type 2 179 -40 802 285 80 44 chr12 121297637 121297864 -22488591 - LTR33A LTR ERVL 0 523 306 2319 122 0 0 chr12 121297864 121298176 -22488279 + AluSx SINE Alu 1 312 0 802 285 80 44 chr12 121298176 121298446 -22488009 - LTR33A LTR ERVL -217 306 8 1105 262 173 32 chr12 121298750 121298809 -22487646 - L2 LINE L2 -24 3289 3240 1544 146 0 4 chr12 121298809 121299048 -22487407 + AluSg/x SINE Alu 72 309 -3 1105 262 173 32 chr12 121299048 121299537 -22486918 - L2 LINE L2 -73 3240 2668 1227 163 0 0 chr12 121299850 121300040 -22486415 - AluSg/x SINE Alu -5 307 118 251 143 238 12 chr12 121300361 121300445 -22486010 - MIR SINE MIR -13 249 147 470 322 67 0 chr12 121300506 121300655 -22485800 - MIR SINE MIR -84 178 20 483 281 127 56 chr12 121301139 121301406 -22485049 - L2 LINE L2 -2 3270 2985 665 268 12 6 chr12 121301414 121301578 -22484877 - MER5B DNA MER1_type -7 171 7 26 0 0 0 chr12 121301760 121301786 -22484669 + AT_rich Low_complexity Low_complexity 1 26 0 531 110 0 0 chr12 121301795 121301868 -22484587 - FRAM SINE Alu -84 92 20 226 289 134 10 chr12 121302023 121302120 -22484335 + MIR SINE MIR 37 145 -63 280 271 52 21 chr12 121302177 121302273 -22484182 - L2 LINE L2 -12 3260 3162 234 0 0 0 chr12 121302617 121302643 -22483812 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 492 284 51 47 chr12 121303608 121303823 -22482632 + MIR SINE MIR 30 245 -17 970 205 0 0 chr12 121303940 121304106 -22482349 + FRAM SINE Alu 1 166 0 23 0 0 0 chr12 121304116 121304139 -22482316 + AT_rich Low_complexity Low_complexity 1 23 0 718 246 159 22 chr12 121304175 121304407 -22482048 + L2 LINE L2 2907 3170 -143 495 285 29 0 chr12 121304409 121304546 -22481909 - MIR SINE MIR -5 257 117 4479 211 61 49 chr12 121304555 121304855 -22481600 + L1MC4 LINE L1 6715 7010 -1032 1918 171 0 3 chr12 121304855 121305147 -22481308 + AluJo SINE Alu 2 292 -20 4479 211 61 49 chr12 121305147 121306158 -22480297 + L1MC4 LINE L1 7010 8042 0 1759 167 57 0 chr12 121306173 121306454 -22480001 + AluJo SINE Alu 1 297 -15 2295 122 0 0 chr12 121306456 121306759 -22479696 + AluSx SINE Alu 1 303 -9 774 120 0 0 chr12 121306759 121306884 -22479571 + (GGGA)n Simple_repeat Simple_repeat 1 125 0 404 239 37 9 chr12 121306889 121306998 -22479457 - MIR SINE MIR -128 134 23 429 135 0 198 chr12 121307136 121307247 -22479208 + L2 LINE L2 3225 3313 0 252 86 0 0 chr12 121307644 121307679 -22478776 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4391 99 9 58 chr12 121308320 121308447 -22478008 - MER41B LTR ERV1 0 635 503 2155 119 0 0 chr12 121308447 121308755 -22477700 + AluSx SINE Alu 1 308 0 4391 99 9 58 chr12 121308755 121309294 -22477161 - MER41B LTR ERV1 -132 503 1 338 204 10 68 chr12 121309423 121309454 -22477001 + L1ME LINE L1 5721 5752 -418 2152 172 10 22 chr12 121309454 121309860 -22476595 + MER57A LTR ERV1 1 401 -2 338 204 10 68 chr12 121309860 121309931 -22476524 + L1ME LINE L1 5752 5817 -353 542 220 0 0 chr12 121310001 121310101 -22476354 + L2 LINE L2 3214 3313 0 254 214 165 0 chr12 121310659 121310762 -22475693 - MIR3 SINE MIR -36 172 53 216 175 0 0 chr12 121310848 121310888 -22475567 + G-rich Low_complexity Low_complexity 6 45 0 319 211 333 9 chr12 121311730 121311844 -22474611 - L2 LINE L2 0 3272 3122 525 213 69 50 chr12 121311970 121312130 -22474325 + MLT1C LTR MaLR 1 163 -227 868 137 0 23 chr12 121312145 121312276 -22474179 - FLAM_C SINE Alu -7 136 9 812 221 67 29 chr12 121312358 121312598 -22473857 + MLT1C LTR MaLR 211 459 -8 328 251 50 132 chr12 121312639 121312858 -22473597 + MIR SINE MIR 30 230 -32 2019 135 4 0 chr12 121312995 121313276 -22473179 + AluSx SINE Alu 1 282 -30 214 39 0 0 chr12 121313276 121313302 -22473153 + (GAAAA)n Simple_repeat Simple_repeat 3 130 0 706 226 30 89 chr12 121313325 121313499 -22472956 + MIR SINE MIR 17 173 -89 478 155 19 0 chr12 121313499 121313602 -22472853 + L1MA8 LINE L1 6187 6291 0 706 226 30 89 chr12 121313602 121313667 -22472788 + MIR SINE MIR 173 240 -22 206 280 0 0 chr12 121314439 121314489 -22471966 - MIR SINE MIR -14 248 199 2711 142 4 59 chr12 121314490 121314997 -22471458 - MLT1D LTR MaLR 0 505 27 1723 161 30 7 chr12 121315009 121315313 -22471142 + AluJb SINE Alu 1 311 -1 466 284 28 0 chr12 121315320 121315461 -22470994 - MIR SINE MIR -53 209 65 562 223 23 15 chr12 121315497 121315627 -22470828 + MLT1K LTR MaLR 450 580 -8 279 217 0 0 chr12 121315752 121315812 -22470643 - L2 LINE L2 0 3272 3213 1053 239 19 0 chr12 121315814 121316027 -22470428 - MER58A DNA MER1_type -3 221 5 235 211 39 0 chr12 121316061 121316113 -22470342 - MIR SINE MIR -143 119 66 1772 94 68 4 chr12 121316128 121316424 -22470031 + AluSx SINE Alu 3 315 0 1002 277 95 45 chr12 121316435 121317112 -22469343 - L2 LINE L2 -91 3222 2501 2169 89 0 0 chr12 121317561 121317867 -22468588 - AluSg SINE Alu 0 306 1 757 232 5 41 chr12 121317880 121318074 -22468381 + MIR SINE MIR 66 252 -10 224 340 118 20 chr12 121318085 121318238 -22468217 - L2 LINE L2 -246 3026 2859 700 120 145 0 chr12 121318456 121318616 -22467839 - AluSg/x SINE Alu 0 327 151 328 226 120 91 chr12 121318792 121318967 -22467488 - MLT1I LTR MaLR 0 409 281 204 99 84 0 chr12 121319343 121319414 -22467041 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 264 59 0 0 chr12 121319414 121319448 -22467007 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1023 196 0 0 chr12 121319448 121319627 -22466828 - AluJo SINE Alu -34 278 100 1530 246 32 23 chr12 121319794 121320228 -22466227 - L1ME1 LINE L1 -5 6161 5724 612 318 73 44 chr12 121320216 121320763 -22465692 - L1ME3A LINE L1 -230 5940 5378 * 261 0 0 0 chr12 121321527 121321556 -22464899 + (TG)n Simple_repeat Simple_repeat 1 29 0 192 77 0 0 chr12 121321668 121321694 -22464761 + (TG)n Simple_repeat Simple_repeat 2 27 0 188 256 85 37 chr12 121322856 121322938 -22463517 + L2 LINE L2 2971 3056 -216 269 374 106 16 chr12 121323096 121323350 -22463105 + L2 LINE L2 2568 2844 -470 442 254 5 127 chr12 121323366 121323405 -22463050 - MER5A DNA MER1_type -2 187 145 1897 107 65 28 chr12 121323405 121323695 -22462760 + AluSx SINE Alu 1 301 -11 442 254 5 127 chr12 121323695 121323860 -22462595 - MER5A DNA MER1_type -44 145 8 490 263 9 0 chr12 121324302 121324416 -22462039 + MIR SINE MIR 55 169 -93 297 227 28 8 chr12 121324715 121324973 -22461482 + (CAGA)n Simple_repeat Simple_repeat 1 263 0 286 240 0 11 chr12 121325011 121325190 -22461265 + (CA)n Simple_repeat Simple_repeat 2 178 0 241 250 152 38 chr12 121325251 121325383 -22461072 - L3b LINE CR1 -288 1295 1149 265 289 233 0 chr12 121325601 121325617 -22460838 - L2 LINE L2 0 3313 3302 343 225 0 0 chr12 121325617 121325697 -22460758 - MER116 DNA Mariner 0 80 1 265 289 233 0 chr12 121325697 121325839 -22460616 - L2 LINE L2 -11 3302 3118 841 178 6 18 chr12 121325847 121326055 -22460400 + FRAM SINE Alu 1 85 0 781 275 125 3 chr12 121326055 121326431 -22460024 - L2 LINE L2 -189 3124 2708 1955 107 0 54 chr12 121326486 121326784 -22459671 + AluSx SINE Alu 1 282 -30 1138 126 17 7 chr12 121326796 121327099 -22459356 + (TAGA)n Simple_repeat Simple_repeat 1 306 0 2206 206 39 8 chr12 121327124 121327609 -22458846 + L1MB4 LINE L1 5653 6152 -28 258 128 0 0 chr12 121327632 121327679 -22458776 + L1MB4 LINE L1 6126 6172 -8 935 169 24 0 chr12 121327685 121327851 -22458604 + AluJb SINE Alu 118 287 -25 187 284 30 0 chr12 121327869 121327936 -22458519 - L2 LINE L2 -629 2685 2617 623 296 21 9 chr12 121328078 121328311 -22458144 + MIR SINE MIR 7 242 -20 1865 144 6 16 chr12 121328361 121328674 -22457781 - AluSx SINE Alu 0 312 3 643 272 14 7 chr12 121328730 121328877 -22457578 + MER45A DNA AcHobo 1 148 -30 217 329 20 62 chr12 121329231 121329377 -22457078 + MER5B DNA MER1_type 8 147 -31 441 331 56 82 chr12 121329420 121329498 -22456957 + L2 LINE L2 2946 3025 -288 1483 180 0 18 chr12 121329498 121329770 -22456685 + AluJo SINE Alu 1 267 -45 2801 79 3 3 chr12 121329780 121330135 -22456320 - THE1A LTR MaLR 0 355 1 12358 89 1 5 chr12 121330135 121331721 -22454734 - THE1A-int LTR MaLR 0 1580 1 2866 79 0 0 chr12 121331722 121332076 -22454379 - THE1A LTR MaLR -1 354 1 441 331 56 82 chr12 121332076 121332361 -22454094 + L2 LINE L2 3032 3313 0 190 273 61 15 chr12 121332357 121332423 -22454032 - MER5A DNA MER1_type -115 74 6 * 420 307 236 7 chr12 121332424 121332720 -22453735 - L3 LINE CR1 -40 1537 1174 1527 212 13 16 chr12 121332993 121333304 -22453151 + AluJb SINE Alu 1 310 -2 1404 170 0 9 chr12 121333621 121333851 -22452604 + AluJb SINE Alu 1 228 -84 1305 39 11 17 chr12 121333856 121334037 -22452418 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 964 133 23 0 chr12 121334038 121334211 -22452244 + GA-rich Low_complexity Low_complexity 4 180 0 394 293 68 8 chr12 121334590 121334723 -22451732 - LTR33 LTR ERVL -379 142 2 403 138 0 0 chr12 121334733 121334798 -22451657 + L2 LINE L2 3248 3312 -1 828 264 52 35 chr12 121335053 121335341 -22451114 + L1ME1 LINE L1 5869 6161 -5 253 297 72 9 chr12 121335458 121335569 -22450886 - L2 LINE L2 -19 3253 3136 330 323 226 14 chr12 121335740 121336244 -22450211 - L2 LINE L2 -452 2862 2252 234 244 67 44 chr12 121336723 121336813 -22449642 - MIR SINE MIR -115 147 56 596 228 174 0 chr12 121336884 121337033 -22449422 + MIR SINE MIR 57 231 -31 915 171 53 92 chr12 121337612 121337840 -22448615 - MER20 DNA MER1_type 0 219 1 589 214 32 80 chr12 121338229 121338416 -22448039 - MIR SINE MIR -6 256 79 308 346 38 38 chr12 121338512 121338645 -22447810 + L2 LINE L2 3140 3272 0 371 301 24 79 chr12 121339125 121339352 -22447103 - MIR SINE MIR -36 226 13 559 266 24 12 chr12 121339564 121339733 -22446722 - MIR SINE MIR -84 178 8 1275 270 46 14 chr12 121340140 121340930 -22445525 - L2 LINE L2 0 3313 2449 420 20 0 0 chr12 121341113 121341162 -22445293 + (TA)n Simple_repeat Simple_repeat 1 49 0 319 258 86 53 chr12 121341205 121341380 -22445075 + MIR SINE MIR 10 187 -62 195 42 0 0 chr12 121343156 121343180 -22443275 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 150 17 0 chr12 121343629 121343689 -22442766 + (CA)n Simple_repeat Simple_repeat 1 61 0 333 159 0 0 chr12 121344509 121344572 -22441883 + (CA)n Simple_repeat Simple_repeat 2 64 0 577 117 0 19 chr12 121345882 121345985 -22440470 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 180 176 0 0 chr12 121346165 121346199 -22440256 + GA-rich Low_complexity Low_complexity 2 35 0 210 169 34 34 chr12 121346473 121346532 -22439923 + C-rich Low_complexity Low_complexity 4 62 0 314 320 0 41 chr12 121348616 121348788 -22437667 + GA-rich Low_complexity Low_complexity 2 166 0 239 150 17 0 chr12 121349329 121349389 -22437066 + (CA)n Simple_repeat Simple_repeat 2 62 0 262 259 0 121 chr12 121352303 121352477 -22433978 + MIR3 SINE MIR 16 168 -40 183 42 0 0 chr12 121356922 121356946 -22429509 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 200 118 0 59 chr12 121357009 121357060 -22429395 + (A)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr12 121358160 121358185 -22428270 + GC_rich Low_complexity Low_complexity 1 25 0 210 258 31 50 chr12 121359597 121359756 -22426699 + (TCTCTG)n Simple_repeat Simple_repeat 2 157 0 204 310 0 30 chr12 121359986 121360086 -22426369 + C-rich Low_complexity Low_complexity 5 101 0 40 21 0 0 chr12 121360458 121360505 -22425950 + GC_rich Low_complexity Low_complexity 1 47 0 260 272 19 10 chr12 121360934 121361037 -22425418 + GA-rich Low_complexity Low_complexity 2 105 0 294 232 50 40 chr12 121361812 121361911 -22424544 + L2 LINE L2 3173 3272 0 311 312 32 0 chr12 121362174 121362267 -22424188 + MIR3 SINE MIR 89 184 -24 1884 118 8 0 chr12 121362269 121362698 -22423757 + AluSx SINE Alu 19 449 0 301 256 103 111 chr12 121362963 121363080 -22423375 - L1ME4a LINE L1 -34 6087 5971 240 59 0 0 chr12 121363080 121363114 -22423341 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 301 256 103 111 chr12 121363114 121363472 -22422983 - L1ME4a LINE L1 -150 5971 5616 * 322 179 0 0 chr12 121363460 121363516 -22422939 - MIR SINE MIR -162 100 45 206 214 51 10 chr12 121363766 121363864 -22422591 + GA-rich Low_complexity Low_complexity 1 102 0 267 318 18 0 chr12 121364085 121364195 -22422260 + (CA)n Simple_repeat Simple_repeat 2 113 0 255 339 0 0 chr12 121364223 121364401 -22422054 + (CA)n Simple_repeat Simple_repeat 1 178 0 208 256 74 58 chr12 121364749 121364870 -22421585 + MIR SINE MIR 21 143 -119 539 292 31 6 chr12 121365483 121365644 -22420811 - MIR SINE MIR -70 192 28 384 22 0 0 chr12 121365694 121365739 -22420716 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 278 376 0 0 chr12 121366804 121366905 -22419550 - MIR SINE MIR -72 136 36 438 158 26 0 chr12 121366906 121366996 -22419459 + MER5A DNA MER1_type 4 96 -93 252 324 35 35 chr12 121367321 121367466 -22418989 + MIR SINE MIR 81 225 -37 2168 143 0 9 chr12 121367731 121368046 -22418409 + AluSx SINE Alu 1 312 0 1386 173 45 77 chr12 121368124 121368437 -22418018 + AluJo SINE Alu 6 308 -4 1956 184 15 15 chr12 121368442 121368473 -22417982 + L1MB5 LINE L1 5750 5780 -394 1734 169 0 67 chr12 121368473 121368788 -22417667 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr12 121368788 121368808 -22417647 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1734 169 0 67 chr12 121368808 121368823 -22417632 + AluJb SINE Alu 295 309 -3 1956 184 15 15 chr12 121368823 121369193 -22417262 + L1MB5 LINE L1 5779 6151 -23 2242 130 7 0 chr12 121369218 121369525 -22416930 + AluSx SINE Alu 1 309 -3 2205 104 9 25 chr12 121369525 121369842 -22416613 + AluSx SINE Alu 1 312 0 806 259 147 3 chr12 121370063 121370403 -22416052 - MER113 DNA MER1_type? 0 521 133 1864 158 0 41 chr12 121370460 121370777 -22415678 + AluJo SINE Alu 1 304 -8 331 264 0 0 chr12 121370942 121371029 -22415426 + MIR SINE MIR 61 147 -115 587 86 0 32 chr12 121371093 121371186 -22415269 + AluJ/FRAM SINE Alu 216 305 -7 316 360 15 7 chr12 121371229 121371365 -22415090 - L2 LINE L2 0 3272 3136 292 207 37 37 chr12 121371466 121371548 -22414907 + MER96B DNA MER1_type? 9 90 -327 1823 205 0 0 chr12 121371550 121371857 -22414598 - AluJo SINE Alu -5 307 1 417 58 76 47 chr12 121371867 121372038 -22414417 + (TA)n Simple_repeat Simple_repeat 2 177 0 210 91 91 30 chr12 121372064 121372163 -22414292 + (ATATG)n Simple_repeat Simple_repeat 1 105 0 396 87 75 46 chr12 121372175 121372348 -22414107 + (ATATG)n Simple_repeat Simple_repeat 1 178 0 297 147 37 37 chr12 121372360 121372523 -22413932 + (ATATG)n Simple_repeat Simple_repeat 1 163 0 303 292 98 38 chr12 121372551 121372787 -22413668 + L1MCa LINE L1 1954 2203 -4223 * 311 281 57 67 chr12 121372644 121372854 -22413601 - L1MCa LINE L1 -4265 2161 1954 32 67 0 0 chr12 121372854 121372914 -22413541 + AT_rich Low_complexity Low_complexity 1 60 0 743 234 6 0 chr12 121372920 121373078 -22413377 + FRAM SINE Alu 4 162 -14 470 225 50 0 chr12 121373233 121373353 -22413102 - MIR SINE MIR -89 173 48 219 207 0 17 chr12 121373434 121373492 -22412963 + MIR SINE MIR 118 174 -88 638 263 98 87 chr12 121374027 121374226 -22412229 - LTR16A1 LTR ERVL -4 453 258 795 65 16 16 chr12 121374226 121374350 -22412105 + (TTC)n Simple_repeat Simple_repeat 3 126 0 1888 108 23 8 chr12 121374350 121374610 -22411845 - AluSq SINE Alu -49 264 1 638 263 98 87 chr12 121374610 121374857 -22411598 - LTR16A1 LTR ERVL -198 259 1 481 226 184 40 chr12 121374938 121375243 -22411212 + L2 LINE L2 2731 3065 -248 774 138 23 15 chr12 121375301 121375431 -22411024 + FLAM_C SINE Alu 3 133 0 288 0 0 0 chr12 121375480 121375512 -22410943 + (TC)n Simple_repeat Simple_repeat 1 32 0 2394 119 0 0 chr12 121375542 121375853 -22410602 - AluSq SINE Alu -2 311 1 1271 176 5 19 chr12 121375853 121376069 -22410386 - AluJo SINE Alu -15 297 85 254 250 12 12 chr12 121376079 121376159 -22410296 + L1MC5 LINE L1 7703 7782 -179 717 210 103 52 chr12 121376166 121376399 -22410056 + L2 LINE L2 3067 3311 -2 236 295 158 14 chr12 121376483 121376622 -22409833 + L2 LINE L2 2433 2591 -723 962 263 108 35 chr12 121376772 121377144 -22409311 + MLT1J LTR MaLR 1 399 -112 1162 220 75 96 chr12 121377210 121377244 -22409211 + MLT1J LTR MaLR 1 34 -477 1852 174 23 0 chr12 121377244 121377548 -22408907 - AluSx SINE Alu -1 311 1 1162 220 75 96 chr12 121377548 121377927 -22408528 + MLT1J LTR MaLR 34 419 -92 233 57 29 0 chr12 121377927 121377962 -22408493 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2046 131 4 0 chr12 121377962 121378236 -22408219 - AluSx SINE Alu -37 275 1 1162 220 75 96 chr12 121378236 121378342 -22408113 + MLT1J LTR MaLR 417 511 0 1956 150 10 16 chr12 121378730 121379043 -22407412 + AluSx SINE Alu 2 312 0 504 196 28 35 chr12 121379521 121379664 -22406791 - MLT1K LTR MaLR -308 280 139 454 198 87 48 chr12 121379799 121379925 -22406530 + MER102a DNA MER1_type 191 321 -9 206 349 0 0 chr12 121380026 121380112 -22406343 + (CA)n Simple_repeat Simple_repeat 1 86 0 1424 188 43 64 chr12 121380133 121380281 -22406174 + MLT1A1 LTR MaLR 1 151 -214 2115 149 0 0 chr12 121380281 121380589 -22405866 + AluSx SINE Alu 1 308 -4 1424 188 43 64 chr12 121380589 121380813 -22405642 + MLT1A1 LTR MaLR 151 365 0 499 206 181 6 chr12 121381901 121382061 -22404394 + MIR SINE MIR 63 250 -12 335 172 76 60 chr12 121382165 121382298 -22404157 - MIR SINE MIR -54 154 18 1876 155 24 7 chr12 121382512 121382809 -22403646 + AluJo SINE Alu 1 302 -10 198 182 0 0 chr12 121382897 121382941 -22403514 - MIR SINE MIR -84 124 81 397 253 23 0 chr12 121383439 121383705 -22402750 + (TGGA)n Simple_repeat Simple_repeat 1 272 0 629 171 17 22 chr12 121383736 121383917 -22402538 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 209 225 0 0 chr12 121383919 121383959 -22402496 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 398 231 24 0 chr12 121383980 121384149 -22402306 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 656 287 5 16 chr12 121384194 121384382 -22402073 + MIR SINE MIR 77 262 0 389 208 19 13 chr12 121385218 121385372 -22401083 + (TCCA)n Simple_repeat Simple_repeat 3 157 0 247 167 30 0 chr12 121385441 121385507 -22400948 + (TCCA)n Simple_repeat Simple_repeat 4 71 0 489 332 112 27 chr12 121385536 121385867 -22400588 - L2 LINE L2 0 3272 2914 205 380 13 0 chr12 121385898 121385977 -22400478 - L2 LINE L2 -1 3271 3192 184 278 0 0 chr12 121386521 121386557 -22399898 - MIR SINE MIR -110 152 117 198 167 0 0 chr12 121387685 121387721 -22398734 + C-rich Low_complexity Low_complexity 1 36 0 240 130 0 0 chr12 121388432 121388478 -22397977 + (CA)n Simple_repeat Simple_repeat 2 47 0 261 343 10 0 chr12 121388711 121388810 -22397645 + L2 LINE L2 2896 2995 -277 255 93 0 0 chr12 121389199 121389242 -22397213 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 735 153 51 122 chr12 121389261 121389516 -22396939 - ORSL DNA AcHobo -2 273 37 701 111 41 29 chr12 121392458 121392630 -22393825 + GA-rich Low_complexity Low_complexity 3 176 0 366 190 9 36 chr12 121392653 121392770 -22393685 - AluS SINE Alu -243 57 2 250 278 59 31 chr12 121393003 121393168 -22393287 - L1ME LINE L1 -317 5847 5674 298 336 149 10 chr12 121394340 121394629 -22391826 + L2 LINE L2 2386 2714 -600 2649 250 48 49 chr12 121394697 121396116 -22390339 + L1ME3A LINE L1 4725 6148 -22 326 283 30 0 chr12 121396170 121396269 -22390186 + L2 LINE L2 2969 3070 -243 1171 245 83 5 chr12 121396314 121396686 -22389769 + MLT1C LTR MaLR 66 466 -1 547 246 58 68 chr12 121396691 121396898 -22389557 + L2 LINE L2 3089 3293 -20 270 0 0 0 chr12 121398079 121398109 -22388346 + (A)n Simple_repeat Simple_repeat 1 30 0 261 159 0 0 chr12 121398267 121398311 -22388144 + MIR SINE MIR 79 122 -140 193 228 203 57 chr12 121398362 121398485 -22387970 - L2 LINE L2 -4 3309 3169 1598 174 22 4 chr12 121398628 121398903 -22387552 - AluJo SINE Alu -12 300 21 426 267 124 22 chr12 121399328 121399553 -22386902 - MIR SINE MIR 0 262 15 680 202 0 0 chr12 121399877 121399996 -22386459 - MER45A DNA AcHobo 0 178 60 249 329 12 0 chr12 121400132 121400214 -22386241 + MIR SINE MIR 109 191 -71 275 309 0 12 chr12 121401047 121401131 -22385324 - MIR SINE MIR -4 258 176 191 279 16 16 chr12 121401815 121401876 -22384579 + L2 LINE L2 3174 3234 -38 348 335 58 54 chr12 121401954 121402214 -22384241 + MIR SINE MIR 2 262 0 256 295 254 0 chr12 121403633 121403850 -22382605 + MER102a DNA MER1_type 59 330 0 548 288 0 11 chr12 121403922 121404099 -22382356 + MER5B DNA MER1_type 1 175 -3 579 295 43 0 chr12 121405136 121405361 -22381094 + MIR SINE MIR 21 261 -1 307 198 139 35 chr12 121405380 121405552 -22380903 + L2 LINE L2 2999 3188 -125 924 205 0 67 chr12 121405561 121405633 -22380822 - MER3 DNA MER1_type 0 209 134 2254 107 14 0 chr12 121405633 121405923 -22380532 + AluSx SINE Alu 1 294 -18 924 205 0 67 chr12 121405923 121405956 -22380499 - MER3 DNA MER1_type -75 134 100 2346 208 58 4 chr12 121405956 121406470 -22379985 + MLT1F LTR MaLR 1 542 0 924 205 0 67 chr12 121406470 121406587 -22379868 - MER3 DNA MER1_type -109 100 1 191 211 0 0 chr12 121406874 121406912 -22379543 + MER5A DNA MER1_type 88 125 -64 217 338 54 0 chr12 121407245 121407319 -22379136 - MIR SINE MIR 0 262 185 2586 54 0 0 chr12 121408793 121409089 -22377366 + AluY SINE Alu 1 296 -15 365 279 157 29 chr12 121409314 121409750 -22376705 + L2 LINE L2 2605 3088 -225 416 323 123 47 chr12 121410809 121411168 -22375287 - Tigger8 DNA MER2_type -91 575 190 629 258 114 72 chr12 121411363 121411836 -22374619 + LTR33 LTR ERVL 29 521 0 1401 189 128 62 chr12 121412234 121412356 -22374099 + MLT1C LTR MaLR 1 113 -354 2166 118 7 3 chr12 121412356 121412653 -22373802 + AluSx SINE Alu 1 298 -14 1401 189 128 62 chr12 121412653 121412968 -22373487 + MLT1C LTR MaLR 113 467 0 255 266 36 86 chr12 121412996 121413135 -22373320 + L2 LINE L2 2729 2860 -454 302 395 12 19 chr12 121414637 121414799 -22371656 + L2 LINE L2 3147 3307 -6 749 243 6 29 chr12 121414892 121415065 -22371390 - MIR SINE MIR -54 208 40 293 292 29 70 chr12 121415096 121415267 -22371188 + MIR3 SINE MIR 37 200 -8 210 143 0 0 chr12 121416626 121416661 -22369794 + (TTC)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 121416745 121416769 -22369686 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 240 59 0 0 chr12 121417087 121417121 -22369334 + (A)n Simple_repeat Simple_repeat 1 34 0 339 291 51 20 chr12 121417316 121417512 -22368943 + L1ME4a LINE L1 5705 5906 -215 2067 131 0 0 chr12 121417557 121417879 -22368576 + AluSx SINE Alu 1 322 0 321 26 0 0 chr12 121417917 121417955 -22368500 + (CA)n Simple_repeat Simple_repeat 1 38 0 333 0 0 0 chr12 121418128 121418165 -22368290 + (TG)n Simple_repeat Simple_repeat 2 38 0 495 305 58 0 chr12 121419428 121419602 -22366853 - Charlie8 DNA MER1_type -2153 264 81 323 271 52 0 chr12 121420374 121420478 -22365977 + MIR SINE MIR 56 165 -66 366 264 64 49 chr12 121421087 121421456 -22364999 + L2 LINE L2 2820 3205 -108 432 313 60 18 chr12 121421616 121421782 -22364673 + MIR SINE MIR 15 187 -75 1652 142 4 4 chr12 121423468 121423722 -22362733 - AluJb SINE Alu -25 287 34 309 172 62 0 chr12 121423812 121423876 -22362579 - MIR SINE MIR -111 151 84 223 304 50 70 chr12 121423998 121424199 -22362256 - L2 LINE L2 -5 3308 3112 318 283 55 35 chr12 121424468 121424613 -22361842 - L2 LINE L2 -57 3256 3109 1992 99 21 7 chr12 121425252 121425565 -22360890 + AluSq SINE Alu 1 317 0 324 307 9 9 chr12 121426254 121426368 -22360087 + Charlie8 DNA MER1_type 98 211 -2206 907 217 79 5 chr12 121427467 121427670 -22358785 - MER20 DNA MER1_type 0 219 2 372 286 0 11 chr12 121428398 121428489 -22357966 - L1MC4 LINE L1 -1339 6703 6614 1682 154 23 39 chr12 121428793 121429098 -22357357 - MLT1A1 LTR MaLR -1 364 65 1179 115 44 11 chr12 121429094 121429294 -22357161 + MLT2A2 LTR ERVL 293 453 0 * 351 266 55 9 chr12 121429462 121429571 -22356884 + MIR SINE MIR 28 141 -67 2077 165 29 11 chr12 121429728 121430109 -22356346 - MLT1B LTR MaLR 0 390 3 1124 237 102 51 chr12 121430242 121430732 -22355723 - MLT1H1 LTR MaLR -8 547 33 201 328 15 15 chr12 121431392 121431459 -22354996 + MIR SINE MIR 16 82 -126 418 276 31 0 chr12 121431505 121431603 -22354852 - MIR SINE MIR -45 217 117 702 209 4 12 chr12 121431664 121431926 -22354529 + GA-rich Low_complexity Low_complexity 1 259 0 2100 124 3 0 chr12 121432445 121432744 -22353711 - AluSx SINE Alu -12 300 1 224 59 29 0 chr12 121432872 121432906 -22353549 + (TA)n Simple_repeat Simple_repeat 2 36 0 442 302 144 14 chr12 121433134 121433349 -22353106 + MIR SINE MIR 17 259 -3 278 255 102 31 chr12 121433363 121433461 -22352994 + MIR SINE MIR 116 220 -42 979 159 14 48 chr12 121433475 121433683 -22352772 - AluJb SINE Alu -27 285 85 21 57 0 0 chr12 121433693 121433728 -22352727 + AT_rich Low_complexity Low_complexity 1 35 0 233 258 0 32 chr12 121434207 121434269 -22352186 - MIR SINE MIR -192 70 11 1888 152 69 13 chr12 121434398 121434787 -22351668 - L1MA5 LINE L1 0 6300 5890 277 256 58 23 chr12 121434803 121434889 -22351566 - MIR SINE MIR -87 175 87 811 171 55 0 chr12 121435493 121435639 -22350816 + AluJb SINE Alu 137 290 -22 301 269 133 75 chr12 121435654 121435760 -22350695 - L1MC4a LINE L1 -1900 5908 5810 1122 114 144 0 chr12 121435760 121435961 -22350494 + MER30 DNA MER1_type 1 230 0 301 269 133 75 chr12 121435961 121436185 -22350270 - L1MC4a LINE L1 -1998 5810 5559 753 246 62 35 chr12 121436603 121436892 -22349563 + LTR16A1 LTR ERVL 148 444 -13 254 197 137 43 chr12 121437773 121437890 -22348565 - L1MC/D LINE L1 -2016 5792 5665 514 243 198 8 chr12 121437911 121438197 -22348258 - MER110 LTR ERV1 -6 485 130 315 276 129 0 chr12 121438314 121438430 -22348025 - MER97b DNA MER1_type? -901 152 22 1442 246 124 24 chr12 121438624 121439280 -22347175 - L1MD3 LINE L1 -19 7976 7059 429 186 88 10 chr12 121439497 121439599 -22346856 + MER5A DNA MER1_type 3 112 -77 1893 133 0 7 chr12 121440083 121440361 -22346094 - AluSx SINE Alu -36 276 1 1046 177 67 5 chr12 121440389 121440598 -22345857 - L1MB3 LINE L1 -72 6111 5890 184 299 95 36 chr12 121440631 121440768 -22345687 - MIR SINE MIR -95 167 23 299 102 0 61 chr12 121440779 121440828 -22345627 - MSTA LTR MaLR 0 426 381 * 774 76 0 19 chr12 121440824 121440929 -22345526 + LTR7 LTR ERV1 346 448 -2 1153 82 0 0 chr12 121440931 121441078 -22345377 + HERVH LTR ERV1 1 147 -7566 * 1184 129 0 0 chr12 121441076 121441246 -22345209 + HERVH LTR ERV1 1946 2115 -5598 2518 77 104 5 chr12 121441263 121441638 -22344817 + LTR7 LTR ERV1 1 412 -38 180 0 0 0 chr12 121441638 121441658 -22344797 + (A)n Simple_repeat Simple_repeat 1 20 0 1994 118 158 3 chr12 121441658 121442005 -22344450 - MSTA LTR MaLR -27 401 1 1572 138 241 11 chr12 121442345 121442693 -22343762 + MSTA LTR MaLR 1 428 0 847 242 17 83 chr12 121443020 121443187 -22343268 - MER58A DNA MER1_type -2196 224 76 1754 140 30 7 chr12 121443187 121443487 -22342968 + AluJb SINE Alu 1 307 -5 847 242 17 83 chr12 121443487 121443559 -22342896 - MER58A DNA MER1_type -2344 76 1 709 256 156 41 chr12 121443761 121444152 -22342303 + LTR33 LTR ERVL 84 519 -2 1717 215 177 24 chr12 121444235 121444737 -22341718 + MLT1E LTR MaLR 10 588 -5 257 292 83 0 chr12 121444749 121444845 -22341610 - MIR SINE MIR -112 150 47 356 261 126 0 chr12 121445740 121445859 -22340596 - L2 LINE L2 -5 3308 3175 913 234 169 49 chr12 121445859 121446325 -22340130 - MLT1H LTR MaLR -14 535 14 422 202 105 26 chr12 121446510 121446624 -22339831 - MIR SINE MIR -111 151 29 1330 252 43 61 chr12 121446970 121447415 -22339040 - LTR40a LTR ERVL -82 437 1 509 248 92 19 chr12 121447415 121447621 -22338834 - MIR SINE MIR -29 233 13 256 256 248 16 chr12 121447677 121447806 -22338649 - MIR SINE MIR -71 191 33 351 254 142 32 chr12 121449613 121449771 -22336684 - MIR SINE MIR -48 214 28 463 343 56 15 chr12 121449962 121450160 -22336295 - MIR SINE MIR -50 212 7 398 256 0 0 chr12 121451004 121451086 -22335369 - L2 LINE L2 -15 3257 3176 209 106 0 43 chr12 121451636 121451683 -22334772 + (TGG)n Simple_repeat Simple_repeat 3 47 0 608 301 35 20 chr12 121451781 121451984 -22334471 - MIR SINE MIR -38 224 19 195 295 26 26 chr12 121452253 121452331 -22334124 + MIR SINE MIR 114 191 -71 319 269 111 0 chr12 121452533 121452641 -22333814 + L1ME LINE L1 5676 5795 -375 2799 104 6 82 chr12 121453084 121453575 -22332880 + Tigger1 DNA MER2_type 1511 1964 -454 847 162 45 0 chr12 121453615 121453794 -22332661 - L1MA4 LINE L1 -18 6282 6096 257 295 152 48 chr12 121453992 121454202 -22332253 + MIR SINE MIR 2 233 -29 517 248 124 19 chr12 121454223 121454384 -22332071 + MER5B DNA MER1_type 1 178 0 21 0 0 0 chr12 121454571 121454592 -22331863 + AT_rich Low_complexity Low_complexity 1 21 0 311 289 189 31 chr12 121454802 121455062 -22331393 + L2 LINE L2 2652 2952 -362 530 269 108 32 chr12 121455121 121455307 -22331148 - MIR SINE MIR -43 219 20 3466 136 15 4 chr12 121455588 121456109 -22330346 + MER1A DNA MER1_type 1 527 0 211 277 85 32 chr12 121456994 121457088 -22329367 + MIR SINE MIR 8 106 -156 1991 61 11 8 chr12 121457269 121457530 -22328925 - AluY SINE Alu -11 300 39 489 210 80 108 chr12 121457897 121458073 -22328382 - MIR SINE MIR -10 252 82 321 303 0 56 chr12 121459677 121459819 -22326636 - MIR SINE MIR -120 142 9 802 207 0 0 chr12 121460011 121460156 -22326299 - FRAM SINE Alu -31 145 1 1136 181 70 0 chr12 121460560 121460803 -22325652 - L1MD3 LINE L1 -6 7989 7730 550 236 115 6 chr12 121460950 121461107 -22325348 - MER3 DNA MER1_type -5 204 31 389 270 121 11 chr12 121461230 121461404 -22325051 - L1MC4a LINE L1 -1933 5875 5683 302 202 192 72 chr12 121461753 121461946 -22324509 - MIR SINE MIR -30 232 17 526 221 86 12 chr12 121461981 121462144 -22324311 - L1MD3 LINE L1 -50 7945 7771 199 297 62 0 chr12 121462355 121462419 -22324036 - L2 LINE L2 -215 3057 2990 189 313 104 0 chr12 121462915 121462982 -22323473 + MER5B DNA MER1_type 48 121 -57 277 200 19 29 chr12 121462983 121463088 -22323367 + (TA)n Simple_repeat Simple_repeat 2 105 0 471 253 69 29 chr12 121463347 121463521 -22322934 + MER20B DNA MER1_type 5 185 -598 937 132 88 13 chr12 121464633 121464792 -22321663 + FRAM SINE Alu 1 169 -7 351 231 51 0 chr12 121465013 121465091 -22321364 + MIR SINE MIR 65 146 -62 212 268 54 0 chr12 121465390 121465446 -22321009 + MIR SINE MIR 124 182 -80 1341 221 58 49 chr12 121465582 121466011 -22320444 + MLT1C LTR MaLR 35 467 0 1308 148 0 14 chr12 121466124 121466333 -22320122 + AluJo SINE Alu 89 294 -18 2510 54 0 3 chr12 121466481 121466778 -22319677 + AluY SINE Alu 1 296 -15 183 279 15 44 chr12 121467367 121467435 -22319020 + MIR SINE MIR 9 74 -188 590 227 136 32 chr12 121467616 121467836 -22318619 + LTR16C LTR ERVL 247 489 -2 230 253 73 133 chr12 121467837 121467987 -22318468 + MIR SINE MIR 76 216 -46 22 0 0 0 chr12 121467996 121468018 -22318437 + AT_rich Low_complexity Low_complexity 1 22 0 462 275 12 81 chr12 121468074 121468234 -22318221 + MIR SINE MIR 44 192 -70 738 213 127 23 chr12 121468318 121468539 -22317916 + MIR SINE MIR 17 260 -2 781 87 40 23 chr12 121468552 121468725 -22317730 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 517 265 45 17 chr12 121468768 121468951 -22317504 + MIR3 SINE MIR 17 205 -3 1891 158 0 44 chr12 121469606 121469922 -22316533 - AluJb SINE Alu -10 302 1 180 302 146 31 chr12 121469976 121470168 -22316287 + L2 LINE L2 2851 3064 -249 694 220 65 104 chr12 121470368 121470553 -22315902 + MER33 DNA MER1_type 2 170 -2415 2109 100 4 14 chr12 121470553 121470834 -22315621 + AluSp SINE Alu 7 284 -29 694 220 65 104 chr12 121470834 121470984 -22315471 + MER33 DNA MER1_type 170 324 0 1851 163 7 0 chr12 121471103 121471403 -22315052 - AluSx SINE Alu -6 306 5 1596 164 25 32 chr12 121471537 121471818 -22314637 + AluJo SINE Alu 13 291 -21 303 177 0 48 chr12 121471927 121471989 -22314466 - L1MCa LINE L1 -4362 2064 2006 676 231 34 46 chr12 121472066 121472304 -22314151 + L1MA9 LINE L1 6019 6253 -59 505 287 42 12 chr12 121472457 121472624 -22313831 + MIR SINE MIR 15 186 -76 541 221 46 15 chr12 121473197 121473328 -22313127 - MIR SINE MIR -21 241 107 405 258 40 24 chr12 121474139 121474263 -22312192 - L2 LINE L2 0 3313 3188 204 40 0 0 chr12 121474332 121474357 -22312098 + (CA)n Simple_repeat Simple_repeat 1 25 0 550 291 101 20 chr12 121474687 121474886 -22311569 + MIR SINE MIR 37 251 -11 369 231 256 12 chr12 121475730 121475890 -22310565 - MIR SINE MIR -58 204 6 485 327 95 21 chr12 121476722 121477049 -22309406 + L2 LINE L2 2920 3270 -43 652 176 0 0 chr12 121478150 121478252 -22308203 - FLAM_A SINE Alu -14 128 27 216 316 292 12 chr12 121478498 121478605 -22307850 - MIR SINE MIR 0 262 186 279 71 0 0 chr12 121478605 121478647 -22307808 + (CA)n Simple_repeat Simple_repeat 1 42 0 216 316 292 12 chr12 121478647 121478710 -22307745 - MIR SINE MIR -76 186 44 340 242 51 118 chr12 121480223 121480288 -22306167 + L1ME LINE L1 5304 5372 -2436 2317 96 3 0 chr12 121480288 121480580 -22305875 + AluSq SINE Alu 1 293 -20 340 242 51 118 chr12 121480580 121480692 -22305763 + L1ME LINE L1 5372 5469 -2339 244 288 119 0 chr12 121480697 121480815 -22305640 + L1ME LINE L1 5483 5614 -507 874 235 70 0 chr12 121480844 121481044 -22305411 + MER58C DNA MER1_type 1 214 -1 261 211 14 14 chr12 121481055 121481126 -22305329 + L1ME LINE L1 5701 5771 -350 454 208 28 0 chr12 121481297 121481403 -22305052 + FRAM SINE Alu 68 176 0 23 0 0 0 chr12 121481654 121481677 -22304778 + AT_rich Low_complexity Low_complexity 1 23 0 686 231 112 0 chr12 121481765 121481934 -22304521 + MER58A DNA MER1_type 8 195 -29 285 287 11 35 chr12 121482614 121482701 -22303754 - MIR SINE MIR -16 246 162 335 287 4 100 chr12 121482707 121482937 -22303518 + MER46C DNA MER2_type 3 210 -128 342 366 8 0 chr12 121483087 121483210 -22303245 - MIR SINE MIR -104 158 35 225 239 30 15 chr12 121483277 121483344 -22303111 + GA-rich Low_complexity Low_complexity 3 70 0 2321 103 13 0 chr12 121483378 121483680 -22302775 + AluSx SINE Alu 1 306 -6 320 311 42 0 chr12 121483853 121483970 -22302485 + MIR SINE MIR 45 165 -65 1550 141 49 19 chr12 121484490 121484753 -22301702 + AluSx SINE Alu 42 312 0 355 263 205 16 chr12 121485424 121485763 -22300692 + L2 LINE L2 2632 3032 -240 604 341 26 9 chr12 121485951 121486180 -22300275 + L2 LINE L2 3079 3311 -2 209 266 0 81 chr12 121486819 121486992 -22299463 + CT-rich Low_complexity Low_complexity 12 170 0 566 332 78 17 chr12 121487283 121487515 -22298940 - MIR SINE MIR -2 260 15 1863 151 3 17 chr12 121487915 121488206 -22298249 - AluJo SINE Alu -25 287 1 239 304 86 36 chr12 121488249 121488469 -22297986 - HAL1b LINE L1 -2 1346 1116 198 304 55 110 chr12 121488557 121488794 -22297661 + L2 LINE L2 3031 3254 -18 727 236 34 6 chr12 121488808 121488986 -22297469 + MER5A DNA MER1_type 3 185 -4 332 274 100 63 chr12 121489441 121489631 -22296824 + MIR SINE MIR 59 255 -7 1864 194 102 13 chr12 121489682 121490135 -22296320 + MLT1D LTR MaLR 13 505 0 320 248 71 26 chr12 121490385 121490498 -22295957 - MIR SINE MIR -64 198 81 185 319 0 0 chr12 121490574 121490621 -22295834 + L2 LINE L2 2709 2755 -559 218 358 102 65 chr12 121490726 121491019 -22295436 + L2 LINE L2 2917 3220 -52 857 246 33 9 chr12 121491071 121491282 -22295173 + MIR SINE MIR 41 256 -6 242 308 0 25 chr12 121491820 121491870 -22294585 + A-rich Low_complexity Low_complexity 4 54 -66 2229 96 3 34 chr12 121491870 121492192 -22294263 + AluSx SINE Alu 1 312 0 242 308 0 25 chr12 121492192 121492261 -22294194 + A-rich Low_complexity Low_complexity 54 120 0 237 319 33 11 chr12 121493645 121493736 -22292719 - MIR SINE MIR -118 144 52 254 215 86 32 chr12 121493817 121493910 -22292545 + MIR SINE MIR 53 150 -112 3916 176 44 6 chr12 121494150 121494490 -22291965 - L1MB8 LINE L1 -1 6177 5851 1897 149 0 32 chr12 121494490 121494799 -22291656 - AluJb SINE Alu -7 305 7 3916 176 44 6 chr12 121494799 121495249 -22291206 - L1MB8 LINE L1 -327 5851 5357 985 246 114 41 chr12 121495763 121495811 -22290644 + MLT1C LTR MaLR 45 88 -379 2523 84 39 22 chr12 121495811 121496169 -22290286 - THE1B LTR MaLR 0 364 1 985 246 114 41 chr12 121496169 121496514 -22289941 + MLT1C LTR MaLR 88 467 0 678 283 83 17 chr12 121496514 121496874 -22289581 - LTR33 LTR ERVL -92 429 46 270 247 11 22 chr12 121496923 121497012 -22289443 + L1MC4a LINE L1 5842 5929 -1879 1753 195 59 8 chr12 121497100 121497474 -22288981 - MLT1C LTR MaLR -61 406 14 1117 162 6 6 chr12 121497843 121498016 -22288439 - AluSx SINE Alu -139 173 1 2018 162 0 0 chr12 121498016 121498324 -22288131 - AluJo SINE Alu -4 308 1 458 245 185 0 chr12 121498340 121498491 -22287964 - MER58A DNA MER1_type 0 224 46 1347 239 49 56 chr12 121498535 121499003 -22287452 - MLT1C LTR MaLR 0 467 3 1735 154 8 4 chr12 121499813 121500079 -22286376 + AluJo SINE Alu 37 303 -9 402 340 25 6 chr12 121500274 121500433 -22286022 + L2 LINE L2 2430 2591 -723 1031 213 93 10 chr12 121500438 121500869 -22285586 - MLT1D LTR MaLR 0 505 3 249 326 61 0 chr12 121500872 121500970 -22285485 + L2 LINE L2 2593 2696 -618 886 301 34 42 chr12 121501041 121501293 -22285162 + L2 LINE L2 2863 3113 -200 2044 94 4 8 chr12 121501293 121501733 -22284722 - AluSc SINE Alu 0 452 14 886 301 34 42 chr12 121501733 121501888 -22284567 + L2 LINE L2 3113 3268 -45 278 270 120 18 chr12 121502234 121502378 -22284077 + L1MC/D LINE L1 5671 5825 -399 4215 182 94 8 chr12 121502379 121502619 -22283836 + L1MC3 LINE L1 6711 6929 -856 2261 88 3 0 chr12 121502619 121502925 -22283530 + AluSq SINE Alu 1 307 0 4215 182 94 8 chr12 121502925 121503059 -22283396 + L1MC3 LINE L1 6929 7050 -735 1941 155 23 3 chr12 121503059 121503363 -22283092 + AluJo SINE Alu 1 310 -2 4215 182 94 8 chr12 121503363 121503969 -22282486 + L1MC3 LINE L1 7050 7777 -8 1973 139 4 0 chr12 121503978 121504251 -22282204 - AluSq SINE Alu -39 274 1 628 219 29 88 chr12 121504377 121504485 -22281970 - L1MC4 LINE L1 -564 7478 7386 2373 88 17 0 chr12 121504485 121504782 -22281673 - AluSc SINE Alu -7 302 1 628 219 29 88 chr12 121504782 121504878 -22281577 - L1MC4 LINE L1 -656 7386 7286 282 241 55 29 chr12 121504973 121505075 -22281380 - MIR SINE MIR -60 148 35 1788 166 0 10 chr12 121505824 121506114 -22280341 - AluJb SINE Alu -14 298 12 548 286 0 54 chr12 121506189 121506336 -22280119 - L2 LINE L2 0 3272 3134 2030 137 20 0 chr12 121506351 121506643 -22279812 + AluSq SINE Alu 1 298 -15 707 255 53 14 chr12 121506986 121507194 -22279261 + MIR SINE MIR 21 236 -26 556 223 163 11 chr12 121507186 121507370 -22279085 - MIR SINE MIR 0 262 51 * 1018 214 96 53 chr12 121508109 121508226 -22278229 + MLT1D LTR MaLR 84 195 -310 2117 150 0 3 chr12 121508226 121508539 -22277916 + AluSx SINE Alu 1 312 0 1018 214 96 53 chr12 121508539 121508818 -22277637 + MLT1D LTR MaLR 195 497 -8 396 181 23 90 chr12 121508934 121509067 -22277388 - LTR33 LTR ERVL -343 178 55 1107 224 12 16 chr12 121509507 121509757 -22276698 + MIR SINE MIR 13 261 -1 1810 141 4 14 chr12 121509778 121510054 -22276401 + AluJb SINE Alu 36 308 -4 449 279 136 7 chr12 121510111 121510265 -22276190 - MIR SINE MIR -77 185 12 230 250 129 14 chr12 121510673 121510813 -22275642 - LTR33 LTR ERVL -37 484 329 484 279 80 16 chr12 121510849 121511100 -22275355 - LTR33 LTR ERVL -245 276 10 291 257 14 14 chr12 121511469 121511543 -22274912 + MIR SINE MIR 45 118 -144 434 135 22 167 chr12 121511572 121511704 -22274751 + MIR SINE MIR 45 164 -66 1923 211 68 7 chr12 121511712 121512152 -22274303 + MLT1C LTR MaLR 1 467 0 428 236 57 8 chr12 121512158 121512281 -22274174 - MLT1G1 LTR MaLR -2 588 460 * 766 212 45 88 chr12 121512250 121512580 -22273875 - MLT1G1 LTR MaLR -239 356 41 1609 137 94 4 chr12 121512941 121513196 -22273259 + AluJo SINE Alu 3 280 -32 191 61 30 0 chr12 121513197 121513230 -22273225 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 536 131 82 49 chr12 121513276 121513398 -22273057 + MLT1B LTR MaLR 4 129 -261 672 278 6 22 chr12 121513703 121513883 -22272572 - MIR SINE MIR -16 246 70 1807 172 0 20 chr12 121514101 121514397 -22272058 - AluJb SINE Alu -22 290 1 594 231 7 42 chr12 121514397 121514540 -22271915 - MIR SINE MIR -102 160 23 301 248 146 36 chr12 121515008 121515145 -22271310 - MIR SINE MIR 0 262 111 2294 125 0 0 chr12 121515200 121515512 -22270943 + AluSx SINE Alu 1 312 0 210 37 0 0 chr12 121515512 121515539 -22270916 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 300 252 72 63 chr12 121516357 121516468 -22269987 + MIR SINE MIR 108 219 -43 631 78 47 0 chr12 121516707 121516835 -22269620 + (TCTA)n Simple_repeat Simple_repeat 2 135 0 36 23 0 0 chr12 121516899 121516942 -22269513 + AT_rich Low_complexity Low_complexity 1 43 0 327 153 321 18 chr12 121517886 121517998 -22268457 + MIR SINE MIR 100 243 -19 215 271 0 57 chr12 121518104 121518174 -22268281 + MIR SINE MIR 95 160 -102 198 349 0 35 chr12 121518156 121518242 -22268213 - MIR3 SINE MIR -23 185 103 * 504 243 58 17 chr12 121518456 121518629 -22267826 - L1ME3A LINE L1 -2 6168 5989 523 228 123 16 chr12 121518663 121518822 -22267633 - MIR SINE MIR -63 145 16 1052 229 105 30 chr12 121518987 121519358 -22267097 - LTR47B LTR ERVL -14 429 31 287 260 55 0 chr12 121519570 121519643 -22266812 - LTR16C LTR ERVL 0 491 415 2353 111 27 41 chr12 121519643 121519969 -22266486 + THE1B LTR MaLR 1 323 -41 2095 132 0 16 chr12 121519969 121520272 -22266183 - AluSx SINE Alu -14 298 1 2353 111 27 41 chr12 121520272 121520314 -22266141 + THE1B LTR MaLR 323 364 0 1756 179 60 56 chr12 121520887 121520978 -22265477 + MLT1C LTR MaLR 1 90 -377 1648 154 30 47 chr12 121520978 121521276 -22265179 + AluJo SINE Alu 1 293 -19 1756 179 60 56 chr12 121521276 121521383 -22265072 + MLT1C LTR MaLR 90 195 -272 270 95 0 0 chr12 121521383 121521425 -22265030 + (CA)n Simple_repeat Simple_repeat 2 43 0 1756 179 60 56 chr12 121521425 121521656 -22264799 + MLT1C LTR MaLR 195 433 -34 1698 151 10 48 chr12 121521656 121521967 -22264488 - AluJo SINE Alu -13 299 1 2091 158 7 0 chr12 121521998 121522308 -22264147 - AluSx SINE Alu 0 312 1 741 275 68 35 chr12 121522978 121523356 -22263099 + LTR16A1 LTR ERVL 90 457 0 835 155 24 121 chr12 121523554 121523714 -22262741 - MER20 DNA MER1_type 0 219 82 1709 144 3 38 chr12 121523714 121524006 -22262449 + AluJo SINE Alu 1 282 -30 835 155 24 121 chr12 121524006 121524052 -22262403 - MER20 DNA MER1_type -137 82 33 600 323 93 8 chr12 121524068 121524432 -22262023 - L2 LINE L2 -250 3022 2612 465 250 18 9 chr12 121524480 121524592 -22261863 - MER63 DNA MER1_type -272 788 676 1035 219 30 50 chr12 121524608 121524816 -22261639 - L1M4 LINE L1 -1917 4229 4027 2022 150 0 3 chr12 121524816 121525116 -22261339 - AluJb SINE Alu -13 299 1 1035 219 30 50 chr12 121525116 121525208 -22261247 - L1M4 LINE L1 -2119 4027 3935 2274 89 7 20 chr12 121525211 121525514 -22260941 + AluSg SINE Alu 1 299 -11 1473 179 117 0 chr12 121525548 121525855 -22260600 + MLT1A1 LTR MaLR 1 343 -22 245 118 0 0 chr12 121525855 121525889 -22260566 + MLT1A1 LTR MaLR 320 353 -12 342 308 77 33 chr12 121525893 121526075 -22260380 - L2 LINE L2 -600 2714 2525 375 271 34 17 chr12 121526115 121526233 -22260222 - LTR16A1 LTR ERVL -103 354 235 342 45 0 0 chr12 121526570 121526614 -22259841 + (TG)n Simple_repeat Simple_repeat 2 45 0 438 226 11 11 chr12 121526642 121526735 -22259720 + MER81 DNA DNA 22 114 0 2267 113 28 28 chr12 121527137 121527501 -22258954 - THE1B LTR MaLR 0 364 1 2381 97 3 7 chr12 121527576 121527884 -22258571 - AluSp SINE Alu -6 307 1 533 258 0 0 chr12 121528925 121529053 -22257402 - LTR16C LTR ERVL 0 491 364 1694 127 42 80 chr12 121529203 121529487 -22256968 - MLT1B LTR MaLR -17 373 80 2144 119 0 3 chr12 121529487 121529773 -22256682 + AluSq SINE Alu 2 286 -27 432 0 0 0 chr12 121529773 121529821 -22256634 + (CA)n Simple_repeat Simple_repeat 2 49 0 1694 127 42 80 chr12 121529821 121529896 -22256559 - MLT1B LTR MaLR -308 82 27 371 234 0 0 chr12 121529892 121529969 -22256486 - FRAM SINE Alu -14 152 76 * 537 215 19 0 chr12 121529987 121530094 -22256361 - FRAM SINE Alu -68 108 1 513 241 101 13 chr12 121530453 121530611 -22255844 + MER5B DNA MER1_type 5 176 -2 315 0 0 0 chr12 121530739 121530803 -22255652 + (CA)n Simple_repeat Simple_repeat 1 99 0 315 0 0 0 chr12 121530803 121530838 -22255617 + (CA)n Simple_repeat Simple_repeat 2 36 0 2195 117 3 3 chr12 121530852 121531151 -22255304 - AluSx SINE Alu -13 299 1 444 294 185 25 chr12 121531296 121531728 -22254727 + LTR33 LTR ERVL 19 519 -2 287 250 0 0 chr12 121531855 121531923 -22254532 + MER113 DNA MER1_type? 334 401 -120 2117 236 15 30 chr12 121532036 121532574 -22253881 - MER74A LTR ERVL -3 555 26 256 279 23 23 chr12 121533063 121533144 -22253311 - MIR SINE MIR -82 126 45 2213 121 0 3 chr12 121533144 121533441 -22253014 - AluSx SINE Alu -16 296 1 433 288 17 0 chr12 121533762 121533880 -22252575 - MIR SINE MIR -29 233 114 1369 204 11 11 chr12 121534028 121534297 -22252158 - AluJo SINE Alu -43 269 1 559 323 55 0 chr12 121534299 121534463 -22251992 - MIR SINE MIR -48 214 42 475 271 100 31 chr12 121534501 121534730 -22251725 + LTR16C LTR ERVL 238 482 -9 292 266 81 24 chr12 121534810 121534934 -22251521 - MIR SINE MIR -36 226 96 1661 181 20 3 chr12 121534994 121535287 -22251168 - AluJb SINE Alu -14 298 1 438 195 0 80 chr12 121535361 121535471 -22250984 + MER20 DNA MER1_type 1 101 -118 720 177 10 89 chr12 121535471 121535674 -22250781 + MLT1E2 LTR MaLR 1 187 -439 259 355 24 16 chr12 121536125 121536249 -22250206 - L2 LINE L2 -213 3059 2935 931 217 79 5 chr12 121536497 121536700 -22249755 + MER20 DNA MER1_type 2 219 0 300 307 9 9 chr12 121537799 121537913 -22248542 - Charlie8 DNA MER1_type -2195 222 109 242 239 114 60 chr12 121538430 121538614 -22247841 - MER112 DNA MER1_type -9 251 58 289 291 209 0 chr12 121538618 121538766 -22247689 - MER63A DNA MER1_type 0 210 32 797 247 86 55 chr12 121538859 121539244 -22247211 - LTR16A LTR ERVL -47 403 7 432 194 85 142 chr12 121539285 121539496 -22246959 + MLT1H LTR MaLR 241 439 -110 998 62 23 0 chr12 121539542 121539672 -22246783 - L1PA7 LINE L1 -7 6147 6015 1041 163 93 0 chr12 121539672 121539887 -22246568 + L1M3 LINE L1 5582 5816 -518 315 151 19 0 chr12 121539892 121539945 -22246510 + MLT1H LTR MaLR 496 549 0 1713 186 88 2 chr12 121540127 121540526 -22245929 - L1PB4 LINE L1 -3 6153 5721 376 262 79 16 chr12 121541077 121541203 -22245252 + LTR33A LTR ERVL 272 405 -118 206 246 66 49 chr12 121541412 121541473 -22244982 - L2 LINE L2 -60 3253 3192 338 293 84 12 chr12 121541487 121541654 -22244801 + LTR16B LTR ERVL 122 300 -164 545 194 202 0 chr12 121541668 121541797 -22244658 + MER63 DNA MER1_type 5 785 -51 336 320 186 6 chr12 121542040 121542264 -22244191 + L2 LINE L2 2738 2996 -317 1822 151 41 149 chr12 121542337 121542853 -22243602 + LTR32 LTR ERVL 12 471 0 269 236 97 14 chr12 121542888 121542960 -22243495 + L2 LINE L2 3203 3280 -33 313 308 50 40 chr12 121543141 121543339 -22243116 + LTR16C LTR ERVL 102 301 -190 1312 202 72 19 chr12 121543342 121543649 -22242806 - MLT1A1 LTR MaLR -2 363 41 1542 177 73 52 chr12 121543649 121544034 -22242421 + MER57A LTR ERV1 1 393 -10 221 301 245 28 chr12 121545232 121545514 -22240941 - L2 LINE L2 -91 3222 2880 326 269 28 57 chr12 121545516 121545657 -22240798 + L2 LINE L2 2914 3050 -222 659 265 146 8 chr12 121545720 121545988 -22240467 + LTR16A LTR ERVL 93 397 -53 189 245 41 0 chr12 121546957 121547006 -22239449 - MIR SINE MIR -113 149 99 1502 167 109 63 chr12 121547342 121547772 -22238683 + LTR7 LTR ERV1 1 450 0 1183 181 13 25 chr12 121547772 121548200 -22238255 + HERVH LTR ERV1 1 459 -7254 21130 156 12 35 chr12 121548260 121553002 -22233453 + HERVH LTR ERV1 801 5097 -2616 8266 177 18 4 chr12 121552996 121554558 -22231897 + HERVH LTR ERV1 6130 7713 0 * 1466 165 119 72 chr12 121554558 121554988 -22231467 + LTR7 LTR ERV1 1 450 0 201 238 48 0 chr12 121554995 121555058 -22231397 + MIR SINE MIR 73 145 -63 226 250 42 0 chr12 121555129 121555201 -22231254 - MLT1G1 LTR MaLR -42 553 479 1373 194 57 40 chr12 121556188 121556539 -22229916 + LTR10A LTR ERV1 192 548 -61 818 241 65 25 chr12 121556548 121556826 -22229629 + LTR10A-int LTR ERV1 1 289 -6360 30853 217 30 29 chr12 121556888 121564215 -22222240 + LTR10A-int LTR ERV1 487 7767 -18 1615 203 87 56 chr12 121564235 121564767 -22221688 + LTR10A LTR ERV1 1 548 -61 333 294 112 28 chr12 121565056 121565270 -22221185 + LTR16B LTR ERVL 68 299 -165 376 275 72 59 chr12 121566793 121567015 -22219440 - LTR16C LTR ERVL -69 422 198 1607 236 94 5 chr12 121572087 121572523 -22213932 + MER68 LTR ERV1 88 562 0 2234 115 0 3 chr12 121572728 121573032 -22213423 - AluSp SINE Alu -10 303 1 354 261 164 5 chr12 121573393 121573588 -22212867 - L1MEc LINE L1 -3667 2548 2323 226 159 159 0 chr12 121573587 121573631 -22212824 + L1MEc LINE L1 2306 2356 -4040 * 482 212 248 20 chr12 121573663 121573969 -22212486 - L1MEc LINE L1 -4180 2216 1841 235 273 154 0 chr12 121574310 121574420 -22212035 - L1MEc LINE L1 -4888 1327 1201 3884 175 218 1 chr12 121574420 121575358 -22211097 + Tigger3b DNA MER2_type 10 1150 -81 7782 12 15 3 chr12 121575411 121576741 -22209714 - L1PA3 LINE L1 -1 6154 4811 8766 29 1 1 chr12 121576741 121577761 -22208694 + L1PA3 LINE L1 3797 4816 -1330 2242 251 142 24 chr12 121577768 121577910 -22208545 - L1MEc LINE L1 -5382 1014 890 1426 216 18 3 chr12 121577910 121578192 -22208263 - AluJo SINE Alu -26 286 1 2242 251 142 24 chr12 121578192 121578953 -22207502 - L1MEc LINE L1 -5506 890 5 265 306 52 30 chr12 121583243 121583377 -22203078 + ERVL LTR ERVL 4779 4915 -849 9786 181 173 11 chr12 121583451 121583748 -22202707 + Tigger4(Zombi) DNA MER2_type 32 279 -2452 3767 92 0 23 chr12 121583748 121584271 -22202184 + MER9 LTR ERVK 1 511 0 9786 181 173 11 chr12 121584271 121586294 -22200161 + Tigger4(Zombi) DNA MER2_type 279 2729 -2 371 320 94 11 chr12 121587025 121587206 -22199249 + LTR16A LTR ERVL 177 372 -78 1788 109 13 77 chr12 121587661 121587972 -22198483 - AluSx SINE Alu -13 299 9 692 215 16 0 chr12 121587999 121588120 -22198335 - FLAM_C SINE Alu -10 123 1 340 0 60 0 chr12 121588966 121589016 -22197439 + L1PA3 LINE L1 6103 6155 0 608 203 108 14 chr12 121589108 121589256 -22197199 + AluJb SINE Alu 130 291 -21 1467 201 108 133 chr12 121590571 121591529 -22194926 - LTR1B LTR ERV1 0 1020 1 1859 68 20 4 chr12 121592484 121592735 -22193720 - L1PA7 LINE L1 -894 5252 4998 6735 62 29 2 chr12 121592745 121593623 -22192832 + L1PA7 LINE L1 5254 6154 0 260 294 24 12 chr12 121595301 121595386 -22191069 + L1MD3 LINE L1 6727 6812 -1183 849 277 109 19 chr12 121596215 121596536 -22189919 + MLT1A1 LTR MaLR 16 365 0 2021 215 105 27 chr12 121598035 121598716 -22187739 - MER21A LTR ERV1 -68 863 195 283 237 129 91 chr12 121600675 121601147 -22185308 + L1MC5 LINE L1 7382 7871 -90 1246 297 135 22 chr12 121603602 121604246 -22182209 - L1M4b LINE L1 -5904 955 239 1760 153 53 39 chr12 121604631 121604990 -22181465 + THE1B LTR MaLR 1 364 0 1198 124 74 10 chr12 121606296 121606522 -22179933 - L1PBa LINE L1 -4223 2626 2385 551 98 0 24 chr12 121611887 121611969 -22174486 - MADE1 DNA Mariner 0 80 1 928 162 27 0 chr12 121615013 121615161 -22171294 - FRAM SINE Alu -27 149 1 471 286 91 21 chr12 121618253 121618494 -22167961 + L1MC4 LINE L1 6753 7010 -1032 498 328 74 5 chr12 121621629 121621818 -22164637 + LTR16A LTR ERVL 177 378 -72 649 137 0 0 chr12 121622776 121622871 -22163584 + AluS SINE Alu 2 96 -216 621 0 0 0 chr12 121624549 121624618 -22161837 + (TA)n Simple_repeat Simple_repeat 1 69 0 1784 151 14 0 chr12 121625062 121625346 -22161109 - AluSx SINE Alu -24 288 1 206 286 103 40 chr12 121627698 121627824 -22158631 - MIR SINE MIR -127 135 2 194 213 147 40 chr12 121628662 121628737 -22157718 - MIR SINE MIR -70 192 110 570 330 73 24 chr12 121628784 121629072 -22157383 + MLT1J LTR MaLR 6 307 -204 206 243 135 0 chr12 121630877 121630951 -22155504 - MIR SINE MIR -113 149 66 298 291 106 7 chr12 121631414 121631565 -22154890 + LTR33 LTR ERVL 350 515 -6 371 298 43 0 chr12 121631633 121631727 -22154728 - MER45 DNA AcHobo -80 98 1 316 262 222 0 chr12 121632465 121632591 -22153864 + LTR16B LTR ERVL 311 464 0 197 287 170 21 chr12 121632610 121632704 -22153751 - MIR SINE MIR -134 128 21 208 281 281 0 chr12 121635519 121635608 -22150847 + MIR SINE MIR 32 145 -63 648 238 184 10 chr12 121638572 121638870 -22147585 - L1MD3 LINE L1 -70 7925 7333 186 296 159 0 chr12 121639945 121640033 -22146422 + L3 LINE CR1 1413 1514 -63 4033 71 28 6 chr12 121642282 121642828 -22143627 - L1PA7 LINE L1 -223 5931 5374 1583 100 41 0 chr12 121642828 121643039 -22143416 + L1PA7 LINE L1 5907 6135 -19 1717 152 83 40 chr12 121643166 121643515 -22142940 + THE1B LTR MaLR 1 364 0 339 272 168 15 chr12 121645097 121645242 -22141213 + L1MEc LINE L1 2210 2413 -3793 239 171 0 0 chr12 121648438 121648479 -22137976 - L1M4 LINE L1 -3800 2346 2306 185 269 173 29 chr12 121653189 121653293 -22133162 - L2 LINE L2 -27 3245 3127 261 250 74 37 chr12 121654032 121654140 -22132315 + L1ME LINE L1 5538 5649 -472 252 0 0 0 chr12 121655036 121655064 -22131391 + (T)n Simple_repeat Simple_repeat 1 28 0 186 189 0 75 chr12 121656559 121656612 -22129843 + L2 LINE L2 3101 3149 -164 186 308 92 0 chr12 121656656 121656721 -22129734 + L2 LINE L2 3198 3268 -4 1367 176 199 28 chr12 121658742 121659139 -22127316 + MLT1E3 LTR MaLR 153 617 -7 181 282 114 47 chr12 121660307 121660456 -22125999 + L2 LINE L2 2834 2992 -321 249 190 66 116 chr12 121661106 121661227 -22125228 + MIR3 SINE MIR 89 203 -5 208 286 260 11 chr12 121661909 121662178 -22124277 + L2 LINE L2 2360 2695 -619 338 338 108 0 chr12 121662319 121662467 -22123988 + L2 LINE L2 2911 3074 -239 286 81 0 0 chr12 121664326 121664363 -22122092 + LTR32 LTR ERVL 32 68 -403 1565 192 114 47 chr12 121664363 121664623 -22121832 + LTR32 LTR ERVL 15 317 -154 1990 106 3 10 chr12 121664623 121664915 -22121540 - AluSg SINE Alu -20 290 1 1565 192 114 47 chr12 121664915 121665082 -22121373 + LTR32 LTR ERVL 317 471 0 518 185 136 115 chr12 121666116 121666402 -22120053 + MER51A LTR ERV1 348 639 -1 705 275 46 27 chr12 121666894 121667156 -22119299 + MER66-int LTR ERV1 625 891 -6925 301 270 102 35 chr12 121667899 121668125 -22118330 + MER66-int LTR ERV1 2336 2576 -4100 1005 322 103 34 chr12 121669101 121670460 -22115995 + MER66-int LTR ERV1 4798 6250 -1506 297 248 64 18 chr12 121670718 121670827 -22115628 + MER66-int LTR ERV1 6561 6674 -2 490 238 161 26 chr12 121671052 121671245 -22115210 + MER51C LTR ERV1 422 640 0 2739 97 82 10 chr12 121671645 121672059 -22114396 + MLT2A1 LTR ERVL 1 444 0 488 211 135 13 chr12 121672229 121672385 -22114070 + L1PB4 LINE L1 5945 6119 -37 310 158 105 0 chr12 121673952 121674028 -22112427 - MIR SINE MIR -141 121 38 2211 123 7 0 chr12 121675136 121675437 -22111018 + AluSx SINE Alu 1 303 -9 254 300 50 0 chr12 121675445 121675525 -22110930 - MER94 DNA DNA -35 99 16 555 238 103 27 chr12 121675919 121676104 -22110351 + MIR SINE MIR 43 241 -21 246 292 66 58 chr12 121676226 121676275 -22110180 - MIR SINE MIR -96 166 119 2142 127 3 0 chr12 121676275 121676575 -22109880 + AluSx SINE Alu 1 301 -11 246 292 66 58 chr12 121676575 121676662 -22109793 - MIR SINE MIR -143 119 29 500 189 0 119 chr12 121677040 121677183 -22109272 + L2 LINE L2 3188 3313 0 702 239 7 0 chr12 121677395 121677550 -22108905 + MIR SINE MIR 82 237 -25 622 290 61 16 chr12 121678714 121678959 -22107496 - MIR SINE MIR 0 262 7 942 211 22 5 chr12 121679424 121679609 -22106846 - MER58A DNA MER1_type 0 224 37 262 214 7 172 chr12 121679887 121680032 -22106423 - MIR SINE MIR -114 148 28 539 232 111 37 chr12 121680363 121680553 -22105902 + MIR SINE MIR 48 251 -11 507 267 40 7 chr12 121680700 121680850 -22105605 - MER5A DNA MER1_type 0 189 35 296 313 175 6 chr12 121681271 121681431 -22105024 - MIR SINE MIR -45 217 31 327 229 0 14 chr12 121681597 121681667 -22104788 - MLT1J2 LTR MaLR -122 328 260 563 293 168 17 chr12 121681868 121682462 -22103993 + L2 LINE L2 2597 3280 -33 328 273 50 10 chr12 121682481 121682580 -22103875 - MIR SINE MIR -140 122 20 779 237 82 48 chr12 121683114 121683430 -22103025 + LTR33 LTR ERVL 1 327 -194 303 188 313 9 chr12 121683693 121683805 -22102650 - L2 LINE L2 -9 3304 3159 223 173 12 99 chr12 121683897 121683928 -22102527 + MIR3 SINE MIR 129 161 -47 2164 127 0 7 chr12 121683928 121684235 -22102220 - AluSq SINE Alu -8 305 1 223 173 12 99 chr12 121684235 121684284 -22102171 + MIR3 SINE MIR 161 202 -6 278 111 0 0 chr12 121685122 121685158 -22101297 + U2 snRNA snRNA 1 36 -152 226 270 189 27 chr12 121685186 121685297 -22101158 - LTR33 LTR ERVL -19 502 374 1995 210 101 13 chr12 121685316 121685773 -22100682 + MLT1D LTR MaLR 9 505 0 244 313 108 0 chr12 121685819 121685985 -22100470 - LTR33 LTR ERVL -235 286 103 502 363 13 9 chr12 121686203 121686429 -22100026 + MIR SINE MIR 32 258 -4 1572 179 83 97 chr12 121686539 121687032 -22099423 + L1MD3 LINE L1 7510 7995 0 396 164 18 55 chr12 121687532 121687668 -22098787 - Alu SINE Alu -251 51 1 990 278 127 31 chr12 121688337 121688512 -22097943 - LTR16A1 LTR ERVL 0 457 300 2226 121 134 8 chr12 121688512 121688892 -22097563 + MSTA LTR MaLR 1 428 0 990 278 127 31 chr12 121688892 121689133 -22097322 - LTR16A1 LTR ERVL -157 300 1 743 241 105 8 chr12 121689184 121689394 -22097061 - MLT1G1 LTR MaLR -363 212 1 2371 68 0 3 chr12 121690002 121690330 -22096125 - AluY SINE Alu 0 327 1 359 316 9 3 chr12 121690345 121690507 -22095948 - HAL1b LINE L1 -858 490 399 589 295 42 31 chr12 121690677 121691219 -22095236 - L1MEd LINE L1 -4896 1223 676 778 228 0 0 chr12 121691506 121691655 -22094800 - MER45B DNA AcHobo -838 202 54 4404 214 26 28 chr12 121691812 121692177 -22094278 + MER45B DNA AcHobo 55 419 -1162 1435 164 23 93 chr12 121692177 121692487 -22093968 + AluJo SINE Alu 1 288 -24 4404 214 26 28 chr12 121692487 121693109 -22093346 + MER45B DNA AcHobo 419 1040 0 467 326 12 45 chr12 121694278 121694523 -22091932 + MIR SINE MIR 20 256 -6 353 282 197 5 chr12 121694624 121694812 -22091643 + MIR SINE MIR 1 224 -38 457 283 136 36 chr12 121694835 121695288 -22091167 + L2 LINE L2 2580 3079 -193 1975 174 65 34 chr12 121695289 121695702 -22090753 + MSTB LTR MaLR 1 426 0 1594 260 18 8 chr12 121695960 121696352 -22090103 + MSTD LTR MaLR 1 396 0 1058 282 20 4 chr12 121696413 121696665 -22089790 + LTR16C LTR ERVL 193 448 -43 240 214 0 0 chr12 121696659 121696701 -22089754 - 5S rRNA rRNA -79 42 1 * 282 242 0 16 chr12 121696701 121696763 -22089692 + LTR16C LTR ERVL 431 491 0 191 294 15 44 chr12 121696771 121696839 -22089616 + L2 LINE L2 3246 3311 -2 213 245 0 0 chr12 121696928 121696977 -22089478 + MIR SINE MIR 94 142 -66 1265 168 0 14 chr12 121697033 121697253 -22089202 + MER20 DNA MER1_type 3 219 0 235 268 0 42 chr12 121697412 121697483 -22088972 + MER104 DNA Tc2 46 113 -67 736 208 39 6 chr12 121698301 121698479 -22087976 - MER5A DNA MER1_type -5 184 1 241 235 51 31 chr12 121698742 121698840 -22087615 - MIR SINE MIR -52 210 111 204 75 38 38 chr12 121699227 121699280 -22087175 + T-rich Low_complexity Low_complexity 3 55 0 243 0 0 0 chr12 121699320 121699347 -22087108 + (T)n Simple_repeat Simple_repeat 1 27 0 408 306 57 38 chr12 121699684 121699893 -22086562 + MLT1J LTR MaLR 247 459 -52 983 286 92 35 chr12 121700063 121700576 -22085879 - L2 LINE L2 -1 3312 2779 240 216 80 45 chr12 121700660 121700748 -22085707 + L2 LINE L2 3223 3313 0 255 176 191 0 chr12 121700792 121700860 -22085595 + MIR SINE MIR 70 150 -112 1638 73 0 0 chr12 121700882 121701087 -22085368 + L1PA6 LINE L1 5941 6145 -9 470 215 62 15 chr12 121701143 121701273 -22085182 - MIR SINE MIR -88 174 39 278 306 160 0 chr12 121702504 121702648 -22083807 - MIR SINE MIR -3 259 93 296 339 43 0 chr12 121702749 121702864 -22083591 - L2 LINE L2 -1 3312 3193 611 309 48 30 chr12 121702977 121703307 -22083148 - LTR16C LTR ERVL 0 491 156 337 148 16 16 chr12 121703485 121703546 -22082909 - MLT1I LTR MaLR 0 409 349 447 332 32 11 chr12 121703580 121703770 -22082685 - MIR SINE MIR -51 211 18 914 288 90 19 chr12 121704013 121704391 -22082064 + MLT1I LTR MaLR 2 406 -3 668 351 104 10 chr12 121704416 121704809 -22081646 - LTR16A LTR ERVL 0 450 21 327 303 92 16 chr12 121704893 121705078 -22081377 - LTR67 LTR ERVL -2 555 357 394 268 34 105 chr12 121705216 121705425 -22081030 - LTR67 LTR ERVL -357 200 7 228 208 0 0 chr12 121705775 121705823 -22080632 - L2 LINE L2 0 3272 3225 578 276 69 10 chr12 121705964 121706167 -22080288 + MIR SINE MIR 48 262 0 2239 109 3 0 chr12 121706408 121706702 -22079753 - AluSx SINE Alu -16 296 2 445 204 0 0 chr12 121706716 121706809 -22079646 + MER5A DNA MER1_type 3 95 -94 450 258 0 23 chr12 121707330 121707458 -22078997 + L2 LINE L2 3189 3313 0 201 219 23 40 chr12 121708196 121708418 -22078037 + GA-rich Low_complexity Low_complexity 1 218 0 1546 187 55 99 chr12 121708418 121708567 -22077888 + LTR33A LTR ERVL 12 166 -357 492 48 0 0 chr12 121708567 121708630 -22077825 + (TC)n Simple_repeat Simple_repeat 2 64 0 1546 187 55 99 chr12 121708630 121708967 -22077488 + LTR33A LTR ERVL 166 477 -46 192 77 0 0 chr12 121708976 121709002 -22077453 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 874 214 227 13 chr12 121709059 121709297 -22077158 + AluJo SINE Alu 1 289 -13 815 180 73 0 chr12 121709506 121709656 -22076799 - FRAM SINE Alu -1 175 15 793 195 0 100 chr12 121709905 121710115 -22076340 - MER5A DNA MER1_type 0 189 1 275 297 27 18 chr12 121710228 121710339 -22076116 - MIR SINE MIR -128 134 23 462 260 75 0 chr12 121710395 121710541 -22075914 + MIR SINE MIR 41 197 -65 1692 116 165 0 chr12 121710968 121711235 -22075220 + AluJb SINE Alu 1 311 -1 390 196 10 52 chr12 121711526 121711623 -22074832 + ORSL DNA AcHobo 1 93 -182 21 36 0 0 chr12 121711626 121711654 -22074801 + AT_rich Low_complexity Low_complexity 1 28 0 357 180 34 11 chr12 121711728 121711817 -22074638 + ORSL DNA AcHobo 140 230 -45 190 214 24 0 chr12 121711832 121711874 -22074581 + L2 LINE L2 3186 3228 -85 292 195 0 24 chr12 121712634 121712716 -22073739 + GA-rich Low_complexity Low_complexity 2 81 0 405 262 34 34 chr12 121712754 121712903 -22073552 - MIR SINE MIR 0 262 114 293 275 107 47 chr12 121712904 121713053 -22073402 - MIR SINE MIR -104 158 1 270 216 112 32 chr12 121713120 121713233 -22073222 - MLT1I LTR MaLR -22 573 281 1127 191 9 14 chr12 121713757 121713977 -22072478 + MER20 DNA MER1_type 1 219 0 197 294 47 47 chr12 121714024 121714109 -22072346 - MER5A DNA MER1_type -50 139 55 366 264 104 52 chr12 121714998 121715210 -22071245 + L1ME4a LINE L1 5560 5782 -339 872 159 6 6 chr12 121715362 121715532 -22070923 - L1M LINE L1 -874 5426 5257 369 304 128 26 chr12 121715993 121716345 -22070110 - L2 LINE L2 -800 2514 2127 191 352 48 0 chr12 121716861 121716966 -22069489 - L2 LINE L2 -222 3050 2941 705 291 167 54 chr12 121717524 121717985 -22068470 - MLT1K LTR MaLR -74 514 2 2426 107 0 0 chr12 121718135 121718445 -22068010 + AluSg SINE Alu 1 310 0 410 194 0 20 chr12 121718450 121718548 -22067907 + GA-rich Low_complexity Low_complexity 3 98 0 635 277 67 34 chr12 121719705 121719943 -22066512 - MIR SINE MIR -14 248 3 1113 173 5 0 chr12 121720287 121720484 -22065971 + AluJb SINE Alu 83 280 -32 189 0 0 0 chr12 121720484 121720505 -22065950 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 802 160 0 0 chr12 121720554 121720685 -22065770 + AluJb SINE Alu 1 131 -181 2060 112 7 0 chr12 121720689 121720994 -22065461 + AluSx SINE Alu 1 307 -5 256 286 52 0 chr12 121721107 121721184 -22065271 + L1ME4a LINE L1 5532 5612 -509 230 274 98 46 chr12 121721194 121721347 -22065108 + L1ME4a LINE L1 5961 6121 0 478 257 195 4 chr12 121721393 121721619 -22064836 + L1ME4a LINE L1 5631 5899 -222 1277 163 0 0 chr12 121722020 121722223 -22064232 + AluJb SINE Alu 1 203 -109 309 101 86 0 chr12 121722223 121722362 -22064093 + (TA)n Simple_repeat Simple_repeat 2 152 0 77 0 0 0 chr12 121722368 121722445 -22064010 + AT_rich Low_complexity Low_complexity 1 77 0 598 215 11 15 chr12 121722902 121723042 -22063413 - MER5A DNA MER1_type -46 132 3 238 180 66 16 chr12 121723066 121723127 -22063328 + Charlie7 DNA MER1_type 32 95 -2517 1964 86 30 4 chr12 121723187 121723456 -22062999 - L1PA10 LINE L1 -9 6159 5884 719 188 0 23 chr12 121723524 121723657 -22062798 - FLAM_A SINE Alu -3 130 1 433 261 183 0 chr12 121723843 121723985 -22062470 - MIR SINE MIR -17 245 78 278 333 34 0 chr12 121724365 121724482 -22061973 - MIR SINE MIR -25 237 117 1666 148 0 41 chr12 121725593 121725883 -22060572 - AluJb SINE Alu -30 282 5 667 257 163 0 chr12 121726874 121727076 -22059379 + MIR SINE MIR 6 240 -22 22 35 0 0 chr12 121727689 121727718 -22058737 + AT_rich Low_complexity Low_complexity 1 29 0 262 390 17 0 chr12 121728057 121728175 -22058280 - LTR16B LTR ERVL -216 248 129 657 222 52 158 chr12 121728325 121728839 -22057616 + MLT1G LTR MaLR 130 589 -1 446 299 144 6 chr12 121728993 121729167 -22057288 + MIR SINE MIR 64 261 -1 509 329 38 39 chr12 121730440 121730774 -22055681 + L2 LINE L2 2719 3059 -213 1025 253 37 4 chr12 121730901 121731142 -22055313 + MIR SINE MIR 3 251 -11 25 31 0 0 chr12 121731147 121731179 -22055276 + AT_rich Low_complexity Low_complexity 1 32 0 314 206 29 15 chr12 121731190 121731258 -22055197 + L2 LINE L2 3245 3313 0 239 255 102 41 chr12 121731279 121731377 -22055078 + L2 LINE L2 3210 3313 0 204 40 0 0 chr12 121731585 121731610 -22054845 + (GA)n Simple_repeat Simple_repeat 2 26 0 307 98 20 20 chr12 121731938 121731989 -22054466 - Alu SINE Alu -13 289 239 209 301 53 98 chr12 121732463 121732596 -22053859 + MER5A DNA MER1_type 16 142 -36 1133 191 9 14 chr12 121732625 121732845 -22053610 - MER20 DNA MER1_type 0 219 1 682 261 22 13 chr12 121733529 121733755 -22052700 - L1ME3A LINE L1 -190 5980 5753 1539 173 11 7 chr12 121733758 121734042 -22052413 - AluJb SINE Alu -27 285 1 198 0 0 0 chr12 121734116 121734138 -22052317 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 351 44 0 0 chr12 121734137 121734182 -22052273 + (CA)n Simple_repeat Simple_repeat 2 46 0 233 195 0 0 chr12 121734268 121734309 -22052146 - Charlie7 DNA MER1_type -2525 87 47 224 211 158 13 chr12 121734384 121734460 -22051995 + MIR SINE MIR 1 87 -175 356 0 23 0 chr12 121735135 121735179 -22051276 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1893 111 90 0 chr12 121735397 121735676 -22050779 + AluSx SINE Alu 1 304 -8 628 262 89 0 chr12 121735738 121735906 -22050549 + MER5A DNA MER1_type 1 183 -6 373 276 59 59 chr12 121736831 121736983 -22049472 + MIR SINE MIR 111 262 0 295 256 61 0 chr12 121737051 121737133 -22049322 - MIR SINE MIR -12 250 164 383 256 139 0 chr12 121737138 121737267 -22049188 + MIR SINE MIR 104 250 -12 207 0 0 0 chr12 121737439 121737462 -22048993 + (TG)n Simple_repeat Simple_repeat 2 24 0 827 176 0 0 chr12 121737906 121738037 -22048418 - FLAM_A SINE Alu 0 133 3 434 193 46 0 chr12 121738040 121738149 -22048306 + MER53 DNA DNA 43 156 -33 207 0 0 0 chr12 121738172 121738195 -22048260 + (TG)n Simple_repeat Simple_repeat 2 24 0 495 44 100 12 chr12 121738196 121738356 -22048099 + (TA)n Simple_repeat Simple_repeat 1 174 0 44 0 0 0 chr12 121738356 121738400 -22048055 + AT_rich Low_complexity Low_complexity 1 44 0 316 354 29 29 chr12 121738662 121738868 -22047587 + L3 LINE CR1 1333 1538 -39 186 182 45 23 chr12 121738887 121738931 -22047524 + L2 LINE L2 3216 3260 -12 361 236 129 36 chr12 121739084 121739224 -22047231 - Charlie8 DNA MER1_type -2264 153 1 604 321 110 0 chr12 121739247 121739456 -22046999 + MIR SINE MIR 31 262 0 370 355 40 10 chr12 121740291 121740491 -22045964 + L3 LINE CR1 1333 1538 -39 186 182 45 23 chr12 121740510 121740554 -22045901 + L2 LINE L2 3216 3260 -12 361 236 129 36 chr12 121740707 121740847 -22045608 - Charlie8 DNA MER1_type -2264 153 1 617 316 110 0 chr12 121740870 121741079 -22045376 + MIR SINE MIR 31 262 0 561 194 160 6 chr12 121741485 121741636 -22044819 - MER5A DNA MER1_type -8 181 4 373 283 62 9 chr12 121741775 121741888 -22044567 - MIR SINE MIR -94 168 50 2227 108 0 3 chr12 121741897 121742202 -22044253 + AluSx SINE Alu 1 304 -8 301 215 21 0 chr12 121742310 121742403 -22044052 + CT-rich Low_complexity Low_complexity 3 97 0 333 0 0 0 chr12 121742616 121742653 -22043802 + (CA)n Simple_repeat Simple_repeat 1 37 0 314 358 37 16 chr12 121742925 121743115 -22043340 - MIR3 SINE MIR 0 208 15 740 279 53 16 chr12 121744109 121744356 -22042099 + MIR SINE MIR 7 262 0 758 292 44 34 chr12 121744412 121744710 -22041745 - MLT1J LTR MaLR 0 511 211 485 243 130 12 chr12 121744714 121744883 -22041572 + MER53 DNA DNA 1 189 0 * 797 263 16 0 chr12 121744883 121745074 -22041381 - MLT1J LTR MaLR -294 217 24 369 260 40 0 chr12 121745227 121745327 -22041128 - MIR SINE MIR -78 184 81 224 305 0 74 chr12 121745439 121745501 -22040954 + L2 LINE L2 3226 3280 -33 1627 246 96 20 chr12 121745501 121746051 -22040404 - MLT1E LTR MaLR -1 592 1 224 305 0 74 chr12 121746051 121746083 -22040372 + L2 LINE L2 3280 3313 0 1537 84 70 0 chr12 121746103 121746317 -22040138 - MER30 DNA MER1_type 0 230 2 543 167 0 0 chr12 121746957 121747041 -22039414 - AluSg/x SINE Alu -18 292 209 467 188 23 8 chr12 121747146 121747279 -22039176 + CT-rich Low_complexity Low_complexity 1 135 0 458 182 9 0 chr12 121747292 121747402 -22039053 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 982 215 84 31 chr12 121747842 121748103 -22038352 + LTR33 LTR ERVL 1 275 -246 2048 155 6 14 chr12 121748154 121748503 -22037952 + MLT2C1 LTR ERVL 1 346 -51 530 210 17 6 chr12 121748515 121748691 -22037764 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 299 202 11 0 chr12 121748706 121748795 -22037660 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 530 226 6 0 chr12 121748809 121748977 -22037478 + (TAGA)n Simple_repeat Simple_repeat 3 171 0 236 162 0 0 chr12 121748982 121749019 -22037436 + MLT2C1 LTR ERVL 518 554 0 495 306 31 0 chr12 121749019 121749179 -22037276 + LTR33 LTR ERVL 356 520 -1 208 297 78 0 chr12 121749180 121749244 -22037211 + L2 LINE L2 2213 2281 -1033 986 280 89 28 chr12 121749486 121749911 -22036544 - L2 LINE L2 -5 3308 2858 641 312 147 28 chr12 121749913 121750554 -22035901 + L2 LINE L2 2540 3267 -5 447 281 41 0 chr12 121751000 121751121 -22035334 + MIR SINE MIR 15 140 -122 464 269 9 0 chr12 121751121 121751229 -22035226 + MER69 DNA AcHobo 18 126 -2400 362 65 0 0 chr12 121751240 121751286 -22035169 + L1PA10 LINE L1 5746 5791 -383 2782 79 22 0 chr12 121751469 121751835 -22034620 + L1PA10 LINE L1 5789 6162 -6 298 108 169 31 chr12 121751846 121751911 -22034544 + MER69 DNA AcHobo 2446 2519 -7 390 256 0 23 chr12 121751944 121752030 -22034425 + MIR SINE MIR 179 262 0 245 358 0 0 chr12 121752079 121752188 -22034267 - LTR67 LTR ERVL -23 534 426 1785 176 120 10 chr12 121752793 121753186 -22033269 + MER63B DNA MER1_type 1 436 0 208 244 0 0 chr12 121753224 121753269 -22033186 + MIR SINE MIR 62 106 -156 604 295 68 59 chr12 121753307 121753544 -22032911 - MIR SINE MIR -21 241 3 252 215 87 132 chr12 121753544 121753701 -22032754 + MIR SINE MIR 104 250 -12 1151 237 131 33 chr12 121754155 121754606 -22031849 + LTR33 LTR ERVL 14 508 -13 212 216 0 0 chr12 121754614 121754651 -22031804 + MIR SINE MIR 109 145 -63 22 56 0 0 chr12 121756003 121756039 -22030416 + AT_rich Low_complexity Low_complexity 1 36 0 303 224 63 42 chr12 121756089 121756232 -22030223 + L1MC5 LINE L1 7788 7933 -28 517 292 174 5 chr12 121756446 121756641 -22029814 + MIR SINE MIR 9 236 -26 443 291 67 12 chr12 121756688 121756853 -22029602 + MLT1K LTR MaLR 40 213 -375 295 197 92 0 chr12 121756842 121756918 -22029537 + MLT1K LTR MaLR 106 188 -400 * 279 212 76 0 chr12 121756928 121756994 -22029461 + MLT1K LTR MaLR 108 178 -410 265 204 151 11 chr12 121757012 121757105 -22029350 + MLT1K LTR MaLR 108 213 -375 416 281 202 54 chr12 121757194 121757600 -22028855 + MLT1K LTR MaLR 123 588 0 1176 215 27 167 chr12 121758060 121758274 -22028181 - MLT1G LTR MaLR -2 528 286 1861 102 16 0 chr12 121758274 121758530 -22027925 - AluSx SINE Alu -4 308 49 1176 215 27 167 chr12 121758530 121759028 -22027427 - MLT1G LTR MaLR -244 286 1 735 295 29 0 chr12 121759064 121759274 -22027181 - MIR SINE MIR -1 261 46 273 229 43 0 chr12 121759474 121759544 -22026911 - MIR3 SINE MIR -52 156 84 294 332 34 25 chr12 121760233 121760468 -22025987 + L1MC4a LINE L1 5635 5871 -1937 666 214 95 6 chr12 121760472 121760640 -22025815 - LTR33 LTR ERVL -8 513 331 552 212 129 0 chr12 121760645 121760777 -22025678 - LTR33 LTR ERVL -372 149 1 263 286 0 0 chr12 121761000 121761098 -22025357 + (TA)n Simple_repeat Simple_repeat 1 98 0 285 191 0 57 chr12 121761133 121761238 -22025217 + (TA)n Simple_repeat Simple_repeat 1 99 0 332 287 121 54 chr12 121761373 121761596 -22024859 - L1MC4a LINE L1 -1959 5849 5612 309 282 71 41 chr12 121762637 121762807 -22023648 + MIR SINE MIR 20 194 -68 195 125 0 0 chr12 121762845 121762885 -22023570 + (T)n Simple_repeat Simple_repeat 1 40 0 458 248 21 35 chr12 121763640 121763785 -22022670 + L2 LINE L2 3171 3313 0 269 224 17 17 chr12 121763903 121763961 -22022494 + MIR SINE MIR 67 124 -84 871 298 40 32 chr12 121764213 121764686 -22021769 - L1ME3A LINE L1 -199 5971 5495 203 309 24 0 chr12 121764701 121764785 -22021670 + MIR SINE MIR 122 207 -55 21 0 0 0 chr12 121764940 121764961 -22021494 + AT_rich Low_complexity Low_complexity 1 21 0 394 323 30 0 chr12 121765045 121765178 -22021277 - MIR SINE MIR -42 220 84 3149 141 72 27 chr12 121765348 121765703 -22020752 - LTR49 LTR ERV1 0 595 204 2830 86 11 3 chr12 121765703 121766075 -22020380 + THE1C LTR MaLR 1 375 0 3149 141 72 27 chr12 121766075 121766278 -22020177 - LTR49 LTR ERV1 -391 204 12 1272 237 117 72 chr12 121766555 121767027 -22019428 - LTR33 LTR ERVL 0 521 29 855 271 99 33 chr12 121767693 121768058 -22018397 + LTR16A LTR ERVL 62 450 0 893 246 5 5 chr12 121768061 121768248 -22018207 + MIR SINE MIR 76 262 0 751 271 27 16 chr12 121768363 121768551 -22017904 + LTR33 LTR ERVL 8 197 -324 209 296 19 0 chr12 121768849 121768903 -22017552 - L2 LINE L2 -6 3266 3212 1340 258 98 8 chr12 121769913 121770312 -22016143 - MLT1J LTR MaLR -16 495 61 239 381 0 0 chr12 121770337 121770421 -22016034 + MIR SINE MIR 2 85 -177 1154 233 23 0 chr12 121770781 121771000 -22015455 - MER58A DNA MER1_type 0 224 1 1261 186 107 24 chr12 121771121 121771459 -22014996 - MER69 DNA AcHobo 0 2526 2161 * 1362 213 114 18 chr12 121771457 121771881 -22014574 - MER69 DNA AcHobo -2010 516 1 1151 276 63 9 chr12 121772827 121773160 -22013295 - MLT1J LTR MaLR -158 353 3 456 294 63 84 chr12 121773310 121773370 -22013085 - L2 LINE L2 -88 3225 3165 2219 131 7 0 chr12 121773370 121773676 -22012779 + AluJb SINE Alu 1 308 -4 456 294 63 84 chr12 121773676 121773871 -22012584 - L2 LINE L2 -148 3165 2967 1977 112 0 0 chr12 121773871 121774172 -22012283 + AluSc SINE Alu 20 320 0 456 294 63 84 chr12 121774172 121774408 -22012047 - L2 LINE L2 -346 2967 2747 209 261 76 22 chr12 121774621 121774713 -22011742 - MIR SINE MIR -114 148 52 472 273 111 20 chr12 121774892 121775233 -22011222 - L1ME4a LINE L1 -12 6109 5738 236 318 16 58 chr12 121775236 121775425 -22011030 + L2 LINE L2 2776 2954 -318 835 292 83 42 chr12 121775753 121776113 -22010342 + LTR33 LTR ERVL 1 375 -146 2364 256 71 7 chr12 121776113 121776703 -22009752 + MLT2E LTR ERVL 1 628 0 2864 180 22 22 chr12 121776797 121777346 -22009109 - MER44D DNA MER2_type -1 604 1 814 223 17 6 chr12 121777358 121777533 -22008922 + MLT1J LTR MaLR 1 177 -334 498 274 54 12 chr12 121777524 121777692 -22008763 + MLT1J LTR MaLR 337 511 0 * 276 218 0 0 chr12 121777978 121778033 -22008422 + MIR SINE MIR 28 82 -180 343 322 34 53 chr12 121779022 121779230 -22007225 + MIR SINE MIR 49 252 -10 249 247 100 55 chr12 121779253 121779524 -22006931 + L1M4c LINE L1 2017 2299 -4085 291 222 62 0 chr12 121780505 121780586 -22005869 + MIR SINE MIR 48 133 -129 183 341 73 78 chr12 121780729 121780908 -22005547 + L2 LINE L2 3024 3201 -71 548 320 0 10 chr12 121780998 121781198 -22005257 + MIR SINE MIR 17 214 -48 292 286 102 0 chr12 121781200 121781298 -22005157 - L2 LINE L2 -3 3269 3162 297 191 12 36 chr12 121781980 121782064 -22004391 + MIR SINE MIR 66 147 -61 280 222 341 8 chr12 121782243 121782369 -22004086 - MER5B DNA MER1_type -2 176 9 565 266 50 15 chr12 121782494 121782693 -22003762 + MIR SINE MIR 48 253 -9 882 228 5 5 chr12 121782753 121782942 -22003513 - MER5A DNA MER1_type 0 189 1 458 259 43 31 chr12 121783058 121783220 -22003235 - MIR3 SINE MIR -2 206 43 318 266 36 17 chr12 121783453 121783569 -22002886 + L1ME LINE L1 5461 5575 -546 1069 207 9 9 chr12 121783592 121783814 -22002641 + MER96B DNA MER1_type? 196 417 0 31 58 0 0 chr12 121784056 121784108 -22002347 + AT_rich Low_complexity Low_complexity 1 52 0 1008 209 74 83 chr12 121784215 121784565 -22001890 - MLT1H LTR MaLR -146 403 57 236 108 62 31 chr12 121784676 121784741 -22001714 + (TTAA)n Simple_repeat Simple_repeat 4 70 0 21 36 0 0 chr12 121785551 121785579 -22000876 + AT_rich Low_complexity Low_complexity 1 28 0 1001 196 0 25 chr12 121785590 121785789 -22000666 + L1PB4 LINE L1 5961 6154 -2 233 376 40 29 chr12 121787014 121787187 -21999268 + L2 LINE L2 2896 3070 -202 270 0 0 0 chr12 121788407 121788437 -21998018 + (CA)n Simple_repeat Simple_repeat 2 31 0 404 281 44 25 chr12 121788544 121788704 -21997751 + MIR SINE MIR 59 221 -41 2423 74 0 3 chr12 121788850 121789146 -21997309 + AluY SINE Alu 1 295 -16 1119 214 5 9 chr12 121789245 121789469 -21996986 - MER58A DNA MER1_type -1 223 1 1218 146 87 9 chr12 121789509 121789829 -21996626 - MSTB1 LTR MaLR 0 432 1 251 149 68 68 chr12 121789839 121789913 -21996542 - MIR SINE MIR -70 192 119 183 80 0 0 chr12 121791012 121791037 -21995418 + (A)n Simple_repeat Simple_repeat 1 25 0 703 189 0 27 chr12 121791056 121791204 -21995251 - MER103 DNA DNA -1 165 22 2748 129 29 2 chr12 121792314 121792732 -21993723 + MER57B LTR ERV1 6 434 0 1144 217 166 69 chr12 121792826 121793319 -21993136 - MLT1F LTR MaLR -1 541 1 276 218 0 0 chr12 121793689 121793744 -21992711 + MIR SINE MIR 28 82 -180 1582 218 117 12 chr12 121795262 121795689 -21990766 + MLT1H LTR MaLR 5 476 -73 1051 246 4 16 chr12 121795856 121796104 -21990351 - MIR SINE MIR 0 262 18 454 313 30 15 chr12 121796153 121796351 -21990104 + MIR SINE MIR 61 261 -1 247 289 124 0 chr12 121797158 121797255 -21989200 + LTR16A LTR ERVL 3 111 -339 311 274 74 21 chr12 121797676 121797771 -21988684 - MIR SINE MIR -71 191 92 719 287 76 4 chr12 121797908 121798145 -21988310 + MIR SINE MIR 2 255 -7 262 206 11 109 chr12 121798443 121798535 -21987920 - MIR3 SINE MIR -48 160 78 1439 206 28 17 chr12 121799117 121799404 -21987051 + MLT1F LTR MaLR 1 290 -252 1291 169 4 21 chr12 121799508 121799750 -21986705 + MLT1F LTR MaLR 305 542 0 243 357 20 10 chr12 121799753 121799851 -21986604 - L2 LINE L2 -27 3245 3147 811 253 99 69 chr12 121800029 121800120 -21986335 + L1ME4a LINE L1 5523 5610 -511 1547 150 20 103 chr12 121800120 121800461 -21985994 + AluYb8 SINE Alu 6 318 0 811 253 99 69 chr12 121800461 121800934 -21985521 + L1ME4a LINE L1 5610 6104 -17 350 283 128 55 chr12 121801840 121802130 -21984325 - L2 LINE L2 0 3313 3003 926 157 13 13 chr12 121802967 121803126 -21983329 + FRAM SINE Alu 1 159 -17 661 156 0 0 chr12 121803169 121803278 -21983177 + FRAM SINE Alu 54 162 -14 328 326 32 59 chr12 121803874 121804061 -21982394 + MIR SINE MIR 4 185 -77 203 277 40 30 chr12 121804146 121804247 -21982208 + MIR SINE MIR 151 252 -10 246 23 70 0 chr12 121804708 121804751 -21981704 + CT-rich Low_complexity Low_complexity 1 46 0 595 161 91 28 chr12 121805227 121805370 -21981085 - MIR SINE MIR -72 190 39 215 250 19 74 chr12 121805459 121805567 -21980888 - MIR SINE MIR -121 141 40 2053 167 0 0 chr12 121805614 121805926 -21980529 + AluJb SINE Alu 1 312 0 572 342 0 17 chr12 121806002 121806239 -21980216 + MIR SINE MIR 17 249 -13 2001 143 4 0 chr12 121806279 121806559 -21979896 + AluSx SINE Alu 1 281 -31 246 32 0 0 chr12 121806562 121806593 -21979862 + (TAA)n Simple_repeat Simple_repeat 3 33 0 22 35 0 0 chr12 121806809 121806838 -21979617 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr12 121806853 121806877 -21979578 + (TA)n Simple_repeat Simple_repeat 1 24 0 1047 282 114 28 chr12 121806954 121807665 -21978790 + L2 LINE L2 2514 3308 -5 285 235 0 0 chr12 121807726 121807794 -21978661 + L2 LINE L2 3245 3312 -1 1574 287 47 7 chr12 121808223 121808669 -21977786 - MLT1J LTR MaLR 0 511 48 606 215 164 11 chr12 121808736 121808913 -21977542 - MIR SINE MIR 0 262 59 353 265 0 0 chr12 121809110 121809193 -21977262 + L2 LINE L2 3223 3305 -8 279 219 56 140 chr12 121809222 121809400 -21977055 + L2 LINE L2 3108 3270 -2 270 320 74 10 chr12 121810313 121810516 -21975939 + L2 LINE L2 2836 3051 -221 716 276 58 4 chr12 121811226 121811483 -21974972 + L2 LINE L2 2681 2951 -363 450 320 78 43 chr12 121811586 121811908 -21974547 + L2 LINE L2 2964 3296 -17 195 273 227 0 chr12 121811923 121812011 -21974444 - L2 LINE L2 -5 3267 3160 192 256 58 12 chr12 121812259 121812345 -21974110 - L2 LINE L2 -502 2812 2723 1738 191 19 33 chr12 121812365 121812727 -21973728 - MLT1A1 LTR MaLR -8 357 1 803 285 117 7 chr12 121812880 121813178 -21973277 + MLT1J LTR MaLR 9 339 -172 834 267 67 67 chr12 121813686 121814207 -21972248 - LTR33A LTR ERVL -2 521 1 21 0 0 0 chr12 121814874 121814895 -21971560 + AT_rich Low_complexity Low_complexity 1 21 0 545 178 14 7 chr12 121815243 121815367 -21971088 - MER5A DNA MER1_type -61 128 5 243 180 66 16 chr12 121815393 121815454 -21971001 + Charlie7 DNA MER1_type 32 95 -2517 1957 86 30 4 chr12 121815514 121815783 -21970672 - L1PA10 LINE L1 -9 6159 5884 713 188 0 23 chr12 121815851 121815984 -21970471 - FLAM_A SINE Alu -3 130 1 370 256 196 0 chr12 121816360 121816493 -21969962 - MIR SINE MIR -17 245 87 311 284 31 31 chr12 121816882 121817009 -21969446 - MIR SINE MIR -25 237 111 485 258 3 10 chr12 121817568 121817957 -21968498 + (TG)n Simple_repeat Simple_repeat 1 385 0 472 320 0 6 chr12 121817982 121818160 -21968295 + (TG)n Simple_repeat Simple_repeat 2 178 0 600 332 36 8 chr12 121818318 121818571 -21967884 + MIR SINE MIR 1 260 -2 1196 276 108 9 chr12 121818754 121819210 -21967245 - LTR33 LTR ERVL -18 503 3 2374 93 0 0 chr12 121819316 121819618 -21966837 + AluSc SINE Alu 1 302 -7 514 177 172 96 chr12 121819731 121819929 -21966526 - MLT1J LTR MaLR -143 368 156 304 265 0 49 chr12 121820055 121820157 -21966298 + MIR SINE MIR 25 121 -87 382 298 12 13 chr12 121820271 121820435 -21966020 - MLT1I LTR MaLR -238 171 63 365 311 79 32 chr12 121820526 121820716 -21965739 - MIR SINE MIR -63 199 1 1152 284 60 50 chr12 121821039 121821476 -21964979 + LTR16C LTR ERVL 50 490 -1 269 299 82 41 chr12 121822360 121822507 -21963948 + MIR SINE MIR 98 250 -12 207 159 23 0 chr12 121823011 121823055 -21963400 + MIR SINE MIR 95 139 -123 571 277 76 13 chr12 121823141 121823365 -21963090 - MIR SINE MIR -12 250 13 554 234 176 70 chr12 121824140 121824452 -21962003 + L2 LINE L2 2969 3313 0 354 279 93 29 chr12 121824709 121824881 -21961574 + MIR SINE MIR 8 190 -72 28 71 0 24 chr12 121824996 121825040 -21961415 + AT_rich Low_complexity Low_complexity 1 44 -39 1301 33 0 0 chr12 121825040 121825192 -21961263 - L1PA3 LINE L1 0 6155 6004 28 71 0 24 chr12 121825192 121825232 -21961223 + AT_rich Low_complexity Low_complexity 44 83 0 342 221 106 19 chr12 121825671 121825775 -21960680 - L2 LINE L2 -18 3295 3183 969 250 75 22 chr12 121826052 121826418 -21960037 + LTR16A LTR ERVL 23 450 0 204 229 21 0 chr12 121826430 121826478 -21959977 + L2 LINE L2 3262 3310 -3 283 216 0 0 chr12 121826479 121826530 -21959925 - MLT1K LTR MaLR 0 588 538 300 309 79 8 chr12 121826573 121826699 -21959756 - MLT1K LTR MaLR -143 445 311 1638 198 0 11 chr12 121826751 121827034 -21959421 + AluJb SINE Alu 3 282 -30 1139 140 29 5 chr12 121827044 121827251 -21959204 - L1MA8 LINE L1 -18 6273 6062 782 275 70 35 chr12 121827258 121827542 -21958913 - MLT1K LTR MaLR -272 316 23 200 355 26 59 chr12 121827786 121827938 -21958517 + L2 LINE L2 3014 3160 -112 600 302 49 29 chr12 121828232 121828477 -21957978 - MIR SINE MIR -12 250 1 256 231 33 74 chr12 121828477 121828591 -21957864 - MIR SINE MIR -70 192 84 186 43 0 0 chr12 121829091 121829114 -21957341 + (CCCCCG)n Simple_repeat Simple_repeat 5 27 0 439 210 110 37 chr12 121829668 121829959 -21956496 + MLT1J2 LTR MaLR 90 401 -8 301 282 105 24 chr12 121830181 121830305 -21956150 + MIR SINE MIR 6 139 -123 745 293 54 34 chr12 121830362 121830601 -21955854 + LTR16A LTR ERVL 25 268 -182 1422 238 92 14 chr12 121830601 121831082 -21955373 + MLT1E LTR MaLR 1 591 -2 527 223 0 85 chr12 121831085 121831131 -21955324 + LTR16A LTR ERVL 265 313 -137 1834 146 4 0 chr12 121831131 121831398 -21955057 + AluSx SINE Alu 40 307 -5 527 223 0 85 chr12 121831398 121831481 -21954974 + LTR16A LTR ERVL 313 383 -67 757 176 0 63 chr12 121831481 121831623 -21954832 - MSTD LTR MaLR 0 396 264 756 165 31 0 chr12 121831645 121831772 -21954683 - MSTD LTR MaLR -297 131 1 364 206 59 0 chr12 121831772 121831840 -21954615 + LTR16A LTR ERVL 379 450 0 225 255 0 0 chr12 121831961 121832008 -21954447 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 561 76 0 0 chr12 121832030 121832109 -21954346 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 304 312 9 0 chr12 121832422 121832531 -21953924 + MIR3 SINE MIR 66 175 -33 630 249 50 146 chr12 121832643 121832689 -21953766 - MLT1L LTR MaLR -112 484 435 2690 142 41 2 chr12 121832689 121833132 -21953323 - L1PA16 LINE L1 0 6166 5707 630 249 50 146 chr12 121833132 121833406 -21953049 - MLT1L LTR MaLR -161 435 110 566 300 38 16 chr12 121833856 121834186 -21952269 + L2 LINE L2 2725 3059 -213 924 253 37 4 chr12 121834313 121834554 -21951901 + MIR SINE MIR 3 251 -11 25 31 0 0 chr12 121834559 121834591 -21951864 + AT_rich Low_complexity Low_complexity 1 32 0 286 206 29 15 chr12 121834602 121834670 -21951785 + L2 LINE L2 3245 3313 0 197 232 85 49 chr12 121834691 121834773 -21951682 + L2 LINE L2 3210 3294 -19 204 40 0 0 chr12 121834996 121835021 -21951434 + (GA)n Simple_repeat Simple_repeat 2 26 0 1809 142 0 65 chr12 121835334 121835657 -21950798 - AluJo SINE Alu -8 304 3 2512 67 7 0 chr12 121835698 121835996 -21950459 - AluY SINE Alu -11 300 1 257 262 153 55 chr12 121836250 121836433 -21950022 - L1MC4a LINE L1 -1859 5949 5749 376 262 32 16 chr12 121836464 121836590 -21949865 + MER5B DNA MER1_type 39 166 -12 241 259 0 0 chr12 121836618 121836676 -21949779 - L1MC4a LINE L1 -354 5767 5710 1020 211 0 9 chr12 121836748 121836966 -21949489 - MER20 DNA MER1_type -3 216 1 2113 129 7 13 chr12 121837019 121837436 -21949019 - AluSx SINE Alu 0 418 4 287 176 0 29 chr12 121837748 121837816 -21948639 + CT-rich Low_complexity Low_complexity 3 68 0 254 323 36 5 chr12 121838641 121838760 -21947695 - MIR SINE MIR -83 125 44 2012 119 0 17 chr12 121838780 121839074 -21947381 + AluSx SINE Alu 5 293 -19 5809 131 35 4 chr12 121839098 121840207 -21946248 + L1PA16 LINE L1 4879 6029 -137 180 0 0 0 chr12 121840207 121840227 -21946228 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 5809 131 35 4 chr12 121840227 121840358 -21946097 + L1PA16 LINE L1 6029 6154 -12 2012 140 7 0 chr12 121840593 121840886 -21945569 + AluSc SINE Alu 1 295 -14 1514 126 38 15 chr12 121840895 121841156 -21945299 + L1PA13 LINE L1 5888 6154 -9 1907 176 48 46 chr12 121841225 121841783 -21944672 - MLT2A2 LTR ERVL 0 554 1 851 206 259 53 chr12 121842173 121842528 -21943927 - MLT1G LTR MaLR -20 570 143 430 273 124 31 chr12 121842928 121843122 -21943333 - MIR SINE MIR -14 248 37 316 224 26 78 chr12 121843580 121843696 -21942759 + MIR SINE MIR 84 193 -69 458 226 32 16 chr12 121845309 121845433 -21941022 - MER91C DNA MER1_type -9 131 6 1158 250 80 54 chr12 121845673 121846061 -21940394 - LTR16C LTR ERVL -23 468 71 281 189 2 112 chr12 121846301 121846424 -21940031 + MIR SINE MIR 45 135 -73 301 236 63 47 chr12 121846651 121846748 -21939707 + MLT2C1 LTR ERVL 183 281 -116 552 201 14 58 chr12 121846748 121846887 -21939568 + MLT1A2 LTR MaLR 2 134 -240 278 26 26 0 chr12 121846914 121846953 -21939502 + (TC)n Simple_repeat Simple_repeat 1 40 0 2290 142 63 135 chr12 121847007 121847621 -21938834 + L1MD2 LINE L1 5780 6349 -10 2018 117 53 13 chr12 121847625 121847925 -21938530 + AluSx SINE Alu 1 312 0 580 292 188 12 chr12 121847994 121848330 -21938125 - LTR16C LTR ERVL 0 491 97 765 140 0 0 chr12 121848639 121848753 -21937702 + FLAM_C SINE Alu 28 141 -2 282 115 0 0 chr12 121848753 121848805 -21937650 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 271 346 77 6 chr12 121848953 121849135 -21937320 - MIR SINE MIR -35 227 33 1414 206 27 30 chr12 121849626 121849927 -21936528 + AluJo SINE Alu 1 300 -12 1872 153 3 32 chr12 121850058 121850371 -21936084 - AluJo SINE Alu -8 304 1 210 233 0 0 chr12 121850441 121850501 -21935954 + (ATGGTG)n Simple_repeat Simple_repeat 4 63 0 2240 113 3 0 chr12 121850624 121850924 -21935531 + AluSp SINE Alu 1 301 -12 608 258 9 63 chr12 121850951 121850986 -21935469 - MIR SINE MIR -6 256 221 2778 73 20 3 chr12 121850986 121851344 -21935111 + THE1B LTR MaLR 1 364 0 608 258 9 63 chr12 121851344 121851529 -21934926 - MIR SINE MIR -41 221 48 288 50 0 0 chr12 121851651 121851691 -21934764 + L1PA3 LINE L1 6113 6152 -3 1750 125 114 7 chr12 121852216 121852488 -21933967 - AluSg1 SINE Alu -8 301 1 819 289 63 23 chr12 121852491 121852840 -21933615 - L1ME4a LINE L1 -294 5827 5465 2452 72 3 0 chr12 121852895 121853185 -21933270 + AluSp SINE Alu 1 291 -22 247 260 20 113 chr12 121853212 121853325 -21933130 - MIR SINE MIR -10 252 155 739 150 55 8 chr12 121853325 121853452 -21933003 - FLAM_C SINE Alu 0 133 1 247 260 20 113 chr12 121853452 121853488 -21932967 - MIR SINE MIR -107 155 117 182 232 18 36 chr12 121853514 121853570 -21932885 + MIR SINE MIR 64 118 -144 492 317 38 64 chr12 121853900 121854244 -21932211 + L2 LINE L2 2919 3253 -19 22 35 0 0 chr12 121856637 121856666 -21929789 + AT_rich Low_complexity Low_complexity 1 29 0 272 91 23 0 chr12 121857003 121857047 -21929408 + (TC)n Simple_repeat Simple_repeat 2 46 0 421 282 68 25 chr12 121857824 121857987 -21928468 + MIR SINE MIR 80 249 -13 765 186 0 0 chr12 121857996 121858125 -21928330 + FLAM_A SINE Alu 2 130 -3 256 264 11 46 chr12 121858134 121858221 -21928234 + L2 LINE L2 3176 3259 -54 880 255 30 8 chr12 121858261 121858496 -21927959 - MIR SINE MIR -6 256 17 480 72 0 0 chr12 121858537 121858606 -21927849 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 233 270 126 38 chr12 121858968 121859127 -21927328 + MIR SINE MIR 35 207 -55 350 301 75 0 chr12 121859518 121859664 -21926791 - MIR SINE MIR -58 204 48 354 235 0 0 chr12 121859730 121859815 -21926640 - L2 LINE L2 0 3272 3188 291 28 0 0 chr12 121860320 121860356 -21926099 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 192 351 53 9 chr12 121861682 121861796 -21924659 - MIR SINE MIR -72 136 18 828 200 5 0 chr12 121861897 121862335 -21924120 + (TGGA)n Simple_repeat Simple_repeat 1 440 0 234 62 0 0 chr12 121862340 121862372 -21924083 + (TTG)n Simple_repeat Simple_repeat 2 33 0 420 291 24 18 chr12 121862473 121862638 -21923817 + L2 LINE L2 3130 3295 -18 229 333 22 37 chr12 121864840 121864975 -21921480 + GA-rich Low_complexity Low_complexity 5 137 0 2008 146 7 3 chr12 121865659 121865968 -21920487 - AluJo SINE Alu -2 310 1 715 244 11 0 chr12 121866066 121866242 -21920213 - MIR SINE MIR -14 248 71 366 205 179 45 chr12 121866645 121866801 -21919654 + MIR SINE MIR 1 177 -85 228 294 11 22 chr12 121867414 121867506 -21918949 - MIR SINE MIR -78 184 94 284 291 30 30 chr12 121867795 121867929 -21918526 - MIR SINE MIR -123 139 6 233 37 0 0 chr12 121868173 121868200 -21918255 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr12 121868527 121868555 -21917900 + AT_rich Low_complexity Low_complexity 1 28 0 1860 173 0 3 chr12 121868555 121868861 -21917594 + AluJb SINE Alu 5 309 -3 560 200 19 52 chr12 121869962 121870117 -21916338 + MIR SINE MIR 101 250 -12 206 241 19 19 chr12 121870150 121870204 -21916251 + GA-rich Low_complexity Low_complexity 2 55 0 271 111 19 19 chr12 121870226 121870280 -21916175 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 875 157 7 7 chr12 121870843 121870996 -21915459 + Charlie4 DNA MER1_type 1808 1960 -1 939 134 0 0 chr12 121871210 121871337 -21915118 + FRAM SINE Alu 18 144 -32 297 0 0 0 chr12 121871337 121871370 -21915085 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 623 267 0 0 chr12 121871460 121871606 -21914849 - MIR SINE MIR -72 190 45 213 121 0 0 chr12 121872007 121872040 -21914415 + (A)n Simple_repeat Simple_repeat 1 33 0 542 277 42 67 chr12 121872837 121872977 -21913478 - MIR SINE MIR -7 255 121 1843 131 93 0 chr12 121872977 121873369 -21913086 + AluSq SINE Alu 1 416 0 542 277 42 67 chr12 121873369 121873465 -21912990 - MIR SINE MIR -141 121 24 385 221 133 0 chr12 121873493 121873606 -21912849 - MLT1B LTR MaLR -57 333 206 297 118 0 0 chr12 121873636 121873687 -21912768 + (TC)n Simple_repeat Simple_repeat 2 52 0 1070 141 0 0 chr12 121873807 121873963 -21912492 - L1PB1 LINE L1 -17 6134 5979 1318 135 41 41 chr12 121875016 121875261 -21911194 + L1PB4 LINE L1 5911 6155 -1 1598 190 17 21 chr12 121875309 121875599 -21910856 - AluJo SINE Alu -13 299 11 366 194 132 56 chr12 121875860 121875981 -21910474 + MIR SINE MIR 94 229 -33 393 22 0 0 chr12 121875981 121876027 -21910428 + (CA)n Simple_repeat Simple_repeat 2 47 0 366 194 132 56 chr12 121876027 121876049 -21910406 + MIR SINE MIR 229 248 -14 279 274 60 43 chr12 121876270 121876387 -21910068 + MIR SINE MIR 90 208 -54 2314 106 7 0 chr12 121876459 121876760 -21909695 - AluSg SINE Alu -7 303 1 375 233 39 48 chr12 121877338 121877441 -21909014 - MER5B DNA MER1_type -3 175 74 1083 206 25 55 chr12 121877441 121877767 -21908688 + L1ME2 LINE L1 5838 6157 -9 233 250 14 0 chr12 121877808 121877880 -21908575 + L1MC4 LINE L1 7830 7902 -140 222 192 0 0 chr12 121877896 121877948 -21908507 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 315 319 35 17 chr12 121877951 121878067 -21908388 + L1MC4 LINE L1 7924 8041 -1 560 279 38 11 chr12 121878234 121878417 -21908038 + MER5A DNA MER1_type 2 189 0 4890 143 20 73 chr12 121878430 121878764 -21907691 + L1MA9 LINE L1 5275 5625 -687 1818 191 0 6 chr12 121878764 121879078 -21907377 + AluJo SINE Alu 1 312 0 4890 143 20 73 chr12 121879078 121879839 -21906616 + L1MA9 LINE L1 5625 6312 0 1485 184 0 88 chr12 121880401 121880721 -21905734 - AluJo SINE Alu -19 293 2 190 125 75 25 chr12 121881409 121881449 -21905006 + MIR SINE MIR 82 123 -85 331 255 165 38 chr12 121881534 121881620 -21904835 + MLT1G3 LTR MaLR 1 75 -520 1644 102 0 5 chr12 121881620 121881868 -21904587 - AluSq SINE Alu 0 320 74 331 255 165 38 chr12 121881868 121882111 -21904344 + MLT1G3 LTR MaLR 75 402 -193 368 244 35 0 chr12 121882581 121882667 -21903788 - MIR SINE MIR -59 203 115 264 218 154 39 chr12 121882762 121882840 -21903615 + L2 LINE L2 3186 3272 0 345 245 10 41 chr12 121882871 121882969 -21903486 + MIR3 SINE MIR 111 205 -3 289 265 0 10 chr12 121883352 121883450 -21903005 + MER113 DNA MER1_type? 3 99 -422 207 139 0 0 chr12 121883464 121883500 -21902955 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1518 183 32 32 chr12 121883580 121883864 -21902591 + AluJo SINE Alu 22 305 -7 635 277 67 34 chr12 121884536 121884774 -21901681 - MIR SINE MIR -14 248 3 1194 178 5 0 chr12 121885118 121885315 -21901140 + AluJb SINE Alu 83 280 -32 189 0 0 0 chr12 121885315 121885336 -21901119 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1732 149 19 42 chr12 121885385 121885520 -21900935 + AluJb SINE Alu 1 138 -174 2236 111 7 0 chr12 121885520 121885827 -21900628 + AluSx SINE Alu 1 309 -3 1732 149 19 42 chr12 121885827 121885999 -21900456 + AluJb SINE Alu 138 301 -11 261 340 46 41 chr12 121886189 121886383 -21900072 - L2 LINE L2 -179 3093 2899 239 289 21 52 chr12 121886554 121886651 -21899804 - L2 LINE L2 -599 2715 2622 973 194 0 0 chr12 121887269 121887434 -21899021 - FRAM SINE Alu -2 174 10 356 0 23 0 chr12 121887718 121887762 -21898693 + (CA)n Simple_repeat Simple_repeat 2 46 0 618 273 187 11 chr12 121889469 121889815 -21896640 + MER113 DNA MER1_type? 9 448 -73 1926 135 3 40 chr12 121889815 121890151 -21896304 + AluSq SINE Alu 1 325 0 618 273 187 11 chr12 121890151 121890236 -21896219 + MER113 DNA MER1_type? 448 517 -4 21 36 0 0 chr12 121890343 121890371 -21896084 + AT_rich Low_complexity Low_complexity 1 28 0 2463 167 7 2 chr12 121890429 121890843 -21895612 + L1MC1 LINE L1 5908 6323 -10 1831 149 3 39 chr12 121890843 121891151 -21895304 - AluJo SINE Alu -15 297 1 2188 128 3 0 chr12 121891154 121891460 -21894995 - AluSx SINE Alu -5 307 1 796 255 0 0 chr12 121891480 121891637 -21894818 - AluJb SINE Alu -11 301 145 22 0 0 0 chr12 121891651 121891673 -21894782 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr12 121891679 121891721 -21894734 + (TG)n Simple_repeat Simple_repeat 2 43 0 865 105 7 77 chr12 121891744 121891887 -21894568 - FLAM_C SINE Alu 0 133 1 2252 121 3 0 chr12 121891926 121892231 -21894224 - AluSx SINE Alu -6 306 1 2889 13 0 0 chr12 121892477 121892787 -21893668 + AluYa5 SINE Alu 2 311 0 696 253 163 0 chr12 121894481 121894683 -21891772 - MIR SINE MIR -22 240 6 198 0 0 0 chr12 121895181 121895203 -21891252 + (A)n Simple_repeat Simple_repeat 1 22 0 370 271 8 41 chr12 121895321 121895443 -21891012 + L1MA10 LINE L1 6217 6334 0 1789 168 0 39 chr12 121897031 121897341 -21889114 + AluJb SINE Alu 5 302 -10 22 56 0 0 chr12 121899179 121899215 -21887240 + GC_rich Low_complexity Low_complexity 1 36 0 303 351 6 34 chr12 121901308 121901544 -21884911 + GA-rich Low_complexity Low_complexity 1 229 0 228 272 61 48 chr12 121902273 121902424 -21884031 + MIR SINE MIR 92 248 -14 23 0 0 0 chr12 121903831 121903854 -21882601 + AT_rich Low_complexity Low_complexity 1 23 0 320 290 28 28 chr12 121904664 121904809 -21881646 + CT-rich Low_complexity Low_complexity 6 150 0 201 229 0 0 chr12 121905706 121905754 -21880701 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 209 68 0 68 chr12 121906268 121906312 -21880143 + (GGA)n Simple_repeat Simple_repeat 1 41 0 261 57 0 0 chr12 121909049 121909084 -21877371 + (TC)n Simple_repeat Simple_repeat 2 36 0 194 173 0 19 chr12 121909186 121909238 -21877217 + CT-rich Low_complexity Low_complexity 1 51 0 183 42 0 0 chr12 121911451 121911475 -21874980 + (TTA)n Simple_repeat Simple_repeat 1 24 0 243 244 12 0 chr12 121918331 121918413 -21868042 + (TG)n Simple_repeat Simple_repeat 2 84 0 306 228 30 59 chr12 121919599 121919700 -21866755 - L1MCa LINE L1 -4334 2092 1995 232 350 7 0 chr12 121919852 121919992 -21866463 + (CA)n Simple_repeat Simple_repeat 2 142 0 384 217 0 12 chr12 121920244 121920327 -21866128 + Tigger5 DNA MER2_type 2237 2318 -5 433 253 43 43 chr12 121920867 121921029 -21865426 - MIR3 SINE MIR -15 193 32 418 279 111 13 chr12 121921184 121921222 -21865233 + L2 LINE L2 2712 2745 -569 831 226 6 6 chr12 121921222 121921386 -21865069 + FRAM SINE Alu 1 164 -2 418 279 111 13 chr12 121921386 121921573 -21864882 + L2 LINE L2 2745 2959 -355 2238 70 10 10 chr12 121921719 121922018 -21864437 + L1PA10 LINE L1 5864 6162 -6 445 279 43 14 chr12 121922026 121922166 -21864289 + MIR SINE MIR 97 240 -22 248 349 53 33 chr12 121922176 121922328 -21864127 + L2 LINE L2 3154 3308 -5 540 136 0 11 chr12 121922388 121922476 -21863979 - Tigger5 DNA MER2_type 0 2323 2237 309 208 0 0 chr12 121922486 121922539 -21863916 - Tigger5 DNA MER2_type -2268 55 3 26 0 0 0 chr12 121923220 121923246 -21863209 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 45 51 chr12 121923707 121923833 -21862622 + MIR SINE MIR 72 198 -64 1690 167 115 0 chr12 121923833 121924145 -21862310 + MER7A DNA MER2_type 1 346 0 299 301 45 51 chr12 121924145 121924174 -21862281 + MIR SINE MIR 198 226 -36 4324 94 7 41 chr12 121924873 121925551 -21860904 + L1MA3 LINE L1 5651 6305 0 563 258 134 66 chr12 121925577 121926062 -21860393 + MLT1H LTR MaLR 1 547 -2 2513 74 0 3 chr12 121926129 121926439 -21860016 + AluY SINE Alu 1 309 -2 530 316 48 24 chr12 121926773 121926979 -21859476 + MLT1K LTR MaLR 166 376 -212 331 272 26 9 chr12 121926986 121927100 -21859355 + MIR SINE MIR 95 210 -52 435 311 56 10 chr12 121927269 121927465 -21858990 + MIR SINE MIR 48 252 -10 373 257 20 61 chr12 121928729 121928877 -21857578 + MIR SINE MIR 78 219 -43 386 268 0 18 chr12 121929432 121929544 -21856911 - L2 LINE L2 -15 3298 3189 412 269 27 34 chr12 121929742 121929891 -21856564 - MIR SINE MIR -19 243 96 1371 226 105 6 chr12 121930416 121930779 -21855676 + L1MC4 LINE L1 7494 7892 -150 269 266 0 108 chr12 121930886 121931025 -21855430 + MLT1K LTR MaLR 439 562 -26 188 358 83 28 chr12 121931092 121931201 -21855254 - L2 LINE L2 -43 3229 3115 2332 122 17 3 chr12 121931202 121931556 -21854899 + MER46B DNA MER2_type 1 234 -2 2174 151 0 0 chr12 121931618 121931930 -21854525 - AluSx SINE Alu 0 312 1 713 153 0 0 chr12 121932384 121932495 -21853960 + L1PA16 LINE L1 6046 6156 -10 1294 161 0 5 chr12 121932495 121932705 -21853750 + L1PA15 LINE L1 5940 6149 -16 28 29 0 0 chr12 121932717 121932752 -21853703 + AT_rich Low_complexity Low_complexity 1 35 0 2125 134 0 3 chr12 121932752 121933057 -21853398 + AluSx SINE Alu 1 304 -8 302 0 26 0 chr12 121933060 121933098 -21853357 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2118 180 8 8 chr12 121933639 121934028 -21852427 - MLT1B LTR MaLR -1 389 1 707 294 64 0 chr12 121934028 121934246 -21852209 - MIR SINE MIR -30 232 1 829 254 0 40 chr12 121934536 121934737 -21851718 - ERVL LTR ERVL -2 5762 5570 805 112 0 14 chr12 121934790 121934933 -21851522 + (TG)n Simple_repeat Simple_repeat 2 142 0 221 250 50 0 chr12 121936303 121936363 -21850092 - MIR SINE MIR -63 145 83 180 0 0 0 chr12 121936523 121936543 -21849912 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 2337 81 0 10 chr12 121936543 121936833 -21849622 - AluY SINE Alu -22 289 1 564 224 97 18 chr12 121936880 121937045 -21849410 + MIR SINE MIR 85 262 0 33 43 0 0 chr12 121937070 121937117 -21849338 + AT_rich Low_complexity Low_complexity 1 47 0 440 302 39 22 chr12 121938523 121938705 -21847750 - MIR SINE MIR -32 230 46 22 35 0 0 chr12 121938997 121939026 -21847429 + AT_rich Low_complexity Low_complexity 1 29 0 367 346 81 0 chr12 121939763 121939974 -21846481 + MIR SINE MIR 35 262 0 468 0 0 0 chr12 121940256 121940308 -21846147 + (CA)n Simple_repeat Simple_repeat 2 53 0 738 284 98 39 chr12 121940308 121940716 -21845739 - L1MC4a LINE L1 -1892 5916 5485 201 147 0 0 chr12 121941898 121941932 -21844523 + (A)n Simple_repeat Simple_repeat 1 34 0 209 125 0 42 chr12 121942126 121942174 -21844281 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 201 80 40 20 chr12 121942811 121942861 -21843594 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 250 222 0 0 chr12 121944613 121944685 -21841770 - MIR SINE MIR -87 121 50 443 255 92 0 chr12 121944943 121945096 -21841359 - MIR SINE MIR -71 191 25 183 114 0 0 chr12 121945998 121946033 -21840422 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 0 62 0 chr12 121946089 121946121 -21840334 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 209 277 160 17 chr12 121947399 121947518 -21838937 + L2 LINE L2 3137 3272 0 296 252 163 0 chr12 121947703 121947826 -21838629 - MIR SINE MIR -41 221 79 303 93 0 0 chr12 121948814 121948857 -21837598 + (T)n Simple_repeat Simple_repeat 1 43 0 241 203 0 0 chr12 121949683 121949742 -21836713 + MIR SINE MIR 71 129 -79 1777 159 10 36 chr12 121949840 121950148 -21836307 - AluJb SINE Alu -4 308 9 246 275 77 0 chr12 121951084 121951175 -21835280 - MIR SINE MIR -73 135 38 259 321 27 0 chr12 121952334 121952446 -21834009 - MIR SINE MIR -75 187 73 312 27 0 0 chr12 121953263 121953300 -21833155 + (ATG)n Simple_repeat Simple_repeat 3 39 0 569 278 73 5 chr12 121953302 121953493 -21832962 - MIR SINE MIR -8 254 51 429 95 0 0 chr12 121953982 121954045 -21832410 + (GA)n Simple_repeat Simple_repeat 1 63 0 795 206 0 0 chr12 121954895 121955070 -21831385 + CT-rich Low_complexity Low_complexity 4 178 0 261 221 0 0 chr12 121955084 121955152 -21831303 + CT-rich Low_complexity Low_complexity 2 69 0 707 241 92 27 chr12 121955322 121955616 -21830839 + L1ME LINE L1 5508 5820 -301 1852 148 13 33 chr12 121955617 121955920 -21830535 - AluSx SINE Alu -15 297 1 296 77 19 0 chr12 121955975 121956027 -21830428 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1987 120 15 0 chr12 121956036 121956302 -21830153 - AluSq SINE Alu -43 270 1 344 176 4 8 chr12 121956404 121956477 -21829978 - AluJo SINE Alu -147 155 105 190 316 7 105 chr12 121956780 121956932 -21829523 - L3 LINE CR1 -1 1576 1440 708 161 0 0 chr12 121957200 121957312 -21829143 - AluJo SINE Alu -194 118 7 328 179 0 51 chr12 121957341 121957419 -21829036 + L1MC5 LINE L1 7842 7915 -46 248 327 9 9 chr12 121958383 121958496 -21827959 + MER5A DNA MER1_type 1 113 -76 22 0 0 0 chr12 121958590 121958612 -21827843 + AT_rich Low_complexity Low_complexity 1 22 0 2042 141 3 0 chr12 121958612 121958903 -21827552 - AluJb SINE Alu -20 292 1 392 317 49 6 chr12 121959024 121959188 -21827267 - MIR SINE MIR -13 249 79 219 186 0 0 chr12 121959197 121959240 -21827215 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1862 159 48 7 chr12 121959338 121959627 -21826828 - AluSx SINE Alu -11 301 1 341 137 0 0 chr12 121959720 121959771 -21826684 + AluJb SINE Alu 72 122 -180 365 289 74 0 chr12 121959821 121959956 -21826499 - MIR SINE MIR -78 184 40 1129 133 12 0 chr12 121960035 121960200 -21826255 - AluY SINE Alu -7 304 138 364 252 41 32 chr12 121960442 121960565 -21825890 + MIR SINE MIR 21 144 -64 21 0 0 0 chr12 121961190 121961211 -21825244 + AT_rich Low_complexity Low_complexity 1 21 0 514 226 113 100 chr12 121961646 121961824 -21824631 + L1MC4a LINE L1 5586 5769 -2039 1567 167 3 70 chr12 121961824 121962136 -21824319 + AluJb SINE Alu 9 299 -13 514 226 113 100 chr12 121962136 121962196 -21824259 + L1MC4a LINE L1 5769 5827 -1981 2153 110 0 58 chr12 121962430 121962565 -21823890 + AluSx SINE Alu 3 144 -168 2146 123 0 3 chr12 121962565 121962867 -21823588 + AluSg SINE Alu 1 301 -9 2153 110 0 58 chr12 121962867 121963058 -21823397 + AluSx SINE Alu 144 310 -2 725 188 0 15 chr12 121963061 121963194 -21823261 + FLAM_A SINE Alu 1 131 -2 206 292 15 0 chr12 121963883 121963948 -21822507 - MIR SINE MIR -21 241 176 1297 265 64 24 chr12 121964121 121964502 -21821953 + LTR16C LTR ERVL 52 453 -38 1707 162 0 65 chr12 121964502 121964823 -21821632 + AluJb SINE Alu 1 300 -12 1297 265 64 24 chr12 121964823 121964864 -21821591 + LTR16C LTR ERVL 453 491 0 2215 118 0 3 chr12 121964909 121965257 -21821198 + AluSx SINE Alu 1 347 0 352 261 62 54 chr12 121965288 121965541 -21820914 - MIR3 SINE MIR -2 260 3 259 344 8 16 chr12 121965604 121965729 -21820726 - MIR SINE MIR -70 192 69 490 211 42 0 chr12 121966226 121966321 -21820134 + MLT1L LTR MaLR 157 255 -360 834 233 39 131 chr12 121966329 121966819 -21819636 + MLT1H1 LTR MaLR 1 445 -97 325 232 94 116 chr12 121966975 121967156 -21819299 + MLT1J LTR MaLR 316 492 -19 5491 130 61 7 chr12 121967169 121967520 -21818935 - Tigger1 DNA MER2_type 0 2418 2087 2280 52 52 45 chr12 121967520 121967828 -21818627 - AluY SINE Alu -1 310 1 5491 130 61 7 chr12 121967828 121968362 -21818093 - Tigger1 DNA MER2_type -331 2087 1485 4090 117 10 0 chr12 121968368 121968966 -21817489 + Tigger1 DNA MER2_type 380 983 -1435 2083 97 0 0 chr12 121969691 121969950 -21816505 + AluSx SINE Alu 11 269 -43 29 60 0 0 chr12 121970167 121970217 -21816238 + AT_rich Low_complexity Low_complexity 1 50 0 1336 149 9 0 chr12 121970312 121970533 -21815922 + L1MA8 LINE L1 6005 6227 -64 808 171 0 7 chr12 121970533 121970679 -21815776 - AluJb SINE Alu -9 303 159 405 0 0 0 chr12 121970833 121970878 -21815577 + (TA)n Simple_repeat Simple_repeat 2 46 0 2104 234 21 7 chr12 121970884 121971456 -21814999 + L1M4 LINE L1 2557 3136 -3010 717 185 0 23 chr12 121971478 121971608 -21814847 + FLAM_C SINE Alu 11 137 -6 670 166 11 112 chr12 121972115 121972195 -21814260 + MER96B DNA MER1_type? 250 302 -115 1661 173 38 3 chr12 121972195 121972484 -21813971 + AluJb SINE Alu 13 311 -1 670 166 11 112 chr12 121972484 121972590 -21813865 + MER96B DNA MER1_type? 302 417 0 595 242 99 28 chr12 121973286 121973497 -21812958 + MIR SINE MIR 37 262 0 906 196 6 6 chr12 121973596 121973775 -21812680 + AluJo SINE Alu 120 298 -14 2120 135 3 0 chr12 121973803 121974106 -21812349 + AluSx SINE Alu 1 304 -8 21 82 0 0 chr12 121974125 121974174 -21812281 + AT_rich Low_complexity Low_complexity 1 49 0 539 256 12 42 chr12 121974782 121974913 -21811542 + MIR SINE MIR 86 212 -50 886 188 31 62 chr12 121974913 121975137 -21811318 - MER20 DNA MER1_type -2 217 1 539 256 12 42 chr12 121975137 121975173 -21811282 + MIR SINE MIR 212 248 -14 245 254 0 0 chr12 121976194 121976249 -21810206 + CT-rich Low_complexity Low_complexity 1 55 0 4963 142 12 64 chr12 121976625 121977363 -21809092 - L1MA4 LINE L1 -11 6289 5514 242 0 61 0 chr12 121977363 121977396 -21809059 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2084 114 0 47 chr12 121977396 121977546 -21808909 - AluSx SINE Alu -29 283 152 2588 66 0 0 chr12 121977546 121977850 -21808605 - AluY SINE Alu -7 304 1 2084 114 0 47 chr12 121977850 121977996 -21808459 - AluSx SINE Alu -160 152 1 4963 142 12 64 chr12 121977996 121978222 -21808233 - L1MA4 LINE L1 -784 5516 5374 477 110 0 0 chr12 121978231 121978304 -21808151 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3440 188 6 6 chr12 121978304 121979010 -21807445 - L1 LINE L1 -813 5333 4641 248 295 71 9 chr12 121979012 121979124 -21807331 - MIR SINE MIR -96 166 48 372 234 75 0 chr12 121979298 121979392 -21807063 - MER91B DNA MER1_type 0 190 90 489 181 29 101 chr12 121979406 121979451 -21807004 - MER91B DNA MER1_type -60 130 83 1718 192 33 6 chr12 121979451 121979785 -21806670 - MER2 DNA MER2_type 0 344 2 489 181 29 101 chr12 121979785 121979877 -21806578 - MER91B DNA MER1_type -107 83 3 389 301 30 45 chr12 121980349 121980548 -21805907 + MIR SINE MIR 16 211 -51 2141 136 0 3 chr12 121980707 121981038 -21805417 + AluSx SINE Alu 4 333 0 580 300 64 9 chr12 121981719 121981939 -21804516 + MIR SINE MIR 31 262 0 516 181 105 41 chr12 121982445 121982616 -21803839 + MER96B DNA MER1_type? 2 183 -234 189 0 0 0 chr12 121983314 121983335 -21803120 + (T)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr12 121983431 121983456 -21802999 + (GGA)n Simple_repeat Simple_repeat 2 26 0 224 331 6 12 chr12 121984551 121984723 -21801732 + GA-rich Low_complexity Low_complexity 2 172 0 202 24 0 98 chr12 121985573 121985614 -21800841 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 774 241 16 40 chr12 121985743 121985996 -21800459 + L1ME3A LINE L1 5663 5909 -261 317 292 22 56 chr12 121987047 121987225 -21799230 - L2 LINE L2 -1 3312 3141 230 170 70 0 chr12 121987231 121987331 -21799124 + (TA)n Simple_repeat Simple_repeat 2 108 0 9879 70 22 35 chr12 121987335 121988711 -21797744 - SVA Other Other 0 1386 29 216 0 0 0 chr12 121988749 121988773 -21797682 + (GGGAGA)n Simple_repeat Simple_repeat 3 26 0 48 67 0 0 chr12 121988777 121988867 -21797588 + AT_rich Low_complexity Low_complexity 1 90 0 188 135 54 0 chr12 121988873 121988947 -21797508 + (TA)n Simple_repeat Simple_repeat 1 78 0 218 230 80 80 chr12 121988993 121989106 -21797349 - L2 LINE L2 -178 3135 3023 2810 224 73 30 chr12 121989117 121989889 -21796566 - L1ME1 LINE L1 -5 6161 5363 224 273 42 14 chr12 121990046 121990189 -21796266 - L2 LINE L2 -337 2977 2831 2000 266 79 99 chr12 121990240 121990835 -21795620 - MLT1G LTR MaLR -12 578 1 195 284 54 27 chr12 121990904 121990978 -21795477 - L2 LINE L2 -72 3200 3125 477 260 130 19 chr12 121991563 121991717 -21794738 + MER5B DNA MER1_type 8 178 0 618 239 75 38 chr12 121991959 121992172 -21794283 - MIR SINE MIR -10 252 32 1798 156 7 3 chr12 121993002 121993291 -21793164 + AluJo SINE Alu 1 290 -22 1979 122 21 7 chr12 121993291 121993608 -21792847 - AluSg SINE Alu 0 321 1 263 300 63 49 chr12 121994515 121994738 -21791717 + L2 LINE L2 2263 2488 -826 361 257 30 0 chr12 121994799 121994900 -21791555 - MIR SINE MIR -50 212 109 779 239 78 16 chr12 121995471 121995714 -21790741 - MIR SINE MIR 0 262 5 366 265 44 37 chr12 121995743 121995879 -21790576 + MIR SINE MIR 49 185 -77 539 335 33 47 chr12 121996320 121996756 -21789699 - L1ME3A LINE L1 -289 5881 5448 330 239 130 11 chr12 121998411 121998503 -21787952 + L2 LINE L2 3210 3312 -1 878 273 191 10 chr12 121998604 121999091 -21787364 + L1ME4a LINE L1 5520 6094 -27 286 202 0 125 chr12 121999470 121999574 -21786881 - MLT1H LTR MaLR -31 518 428 291 273 66 33 chr12 121999711 121999832 -21786623 - MLT1H LTR MaLR -375 174 50 1899 165 3 7 chr12 122000106 122000403 -21786052 - AluJo SINE Alu -16 296 1 1160 268 68 48 chr12 122000497 122000911 -21785544 + MLT2E LTR ERVL 1 422 -206 259 177 32 0 chr12 122000919 122000981 -21785474 - MIR SINE MIR -113 149 86 366 288 67 45 chr12 122001241 122001471 -21784984 + MLT1I LTR MaLR 98 310 -99 365 182 20 24 chr12 122001522 122001619 -21784836 + MLT1F LTR MaLR 434 526 -16 724 209 21 109 chr12 122002089 122002328 -21784127 + MER20 DNA MER1_type 1 218 -1 1205 196 3 58 chr12 122002662 122002963 -21783492 - L1MB8 LINE L1 -186 5992 5711 751 276 38 4 chr12 122003200 122003440 -21783015 - MIR SINE MIR 0 262 17 447 214 165 33 chr12 122003597 122003779 -21782676 + MIR SINE MIR 36 241 -21 180 252 217 17 chr12 122004777 122004892 -21781563 + MIR3 SINE MIR 2 139 -69 362 211 0 11 chr12 122004980 122005075 -21781380 + GA-rich Low_complexity Low_complexity 3 96 0 1823 198 48 24 chr12 122006258 122006424 -21780031 + L1MB8 LINE L1 5714 5874 -304 1727 145 54 46 chr12 122006424 122006796 -21779659 + THE1C LTR MaLR 1 375 0 1823 198 48 24 chr12 122006796 122007083 -21779372 + L1MB8 LINE L1 5874 6178 0 2266 105 0 13 chr12 122007097 122007402 -21779053 + AluSx SINE Alu 1 301 -11 305 328 129 33 chr12 122007600 122007902 -21778553 + L3 LINE CR1 1245 1575 -2 769 140 4 183 chr12 122008032 122008267 -21778188 - 7SK RNA RNA 0 193 1 330 308 91 14 chr12 122008328 122008471 -21777984 + MIR SINE MIR 1 154 -108 566 223 31 15 chr12 122008819 122008949 -21777506 - 7SK RNA RNA -40 153 22 193 269 0 28 chr12 122009039 122009180 -21777275 + (CCA)n Simple_repeat Simple_repeat 1 137 0 467 256 0 6 chr12 122009196 122009368 -21777087 + (CACCAT)n Simple_repeat Simple_repeat 6 176 0 395 258 83 28 chr12 122012204 122012421 -21774034 + L1ME LINE L1 5591 5819 -302 4022 86 11 11 chr12 122012435 122013003 -21773452 + L1PA10 LINE L1 5600 6167 -1 31 76 0 0 chr12 122013159 122013225 -21773230 + AT_rich Low_complexity Low_complexity 1 66 0 1057 40 0 0 chr12 122013358 122013483 -21772972 + L1PA7 LINE L1 6026 6150 -4 2981 154 3 8 chr12 122014141 122014649 -21771806 + L1HS LINE L1 5652 6144 -161 1147 114 30 0 chr12 122014650 122014816 -21771639 + L1PA11 LINE L1 6000 6170 -4 1162 78 6 12 chr12 122014857 122015023 -21771432 + L1MA3 LINE L1 6132 6296 -9 44 0 0 0 chr12 122015025 122015069 -21771386 + AT_rich Low_complexity Low_complexity 1 44 0 2107 114 23 19 chr12 122015089 122015397 -21771058 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr12 122015424 122015445 -21771010 + AT_rich Low_complexity Low_complexity 1 21 0 218 269 0 26 chr12 122015883 122015961 -21770494 + MIR SINE MIR 20 95 -167 1248 137 39 0 chr12 122016056 122016238 -21770217 + AluSq SINE Alu 1 189 -124 2191 118 3 26 chr12 122016258 122016605 -21769850 - THE1C LTR MaLR -36 339 1 453 266 118 25 chr12 122016864 122017067 -21769388 - MIR SINE MIR -26 236 15 359 284 76 76 chr12 122017077 122017195 -21769260 + L1MC5 LINE L1 5451 5568 -2240 1656 176 0 50 chr12 122017195 122017513 -21768942 + AluJb SINE Alu 1 302 -10 359 284 76 76 chr12 122017513 122017669 -21768786 + L1MC5 LINE L1 5567 5725 -2083 727 224 132 88 chr12 122017701 122017819 -21768636 + HAL1b LINE L1 602 713 -635 789 134 70 19 chr12 122017819 122017976 -21768479 + L1MA8 LINE L1 6121 6285 -6 727 224 132 88 chr12 122017976 122018157 -21768298 + HAL1b LINE L1 713 885 -463 186 43 0 0 chr12 122018157 122018180 -21768275 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1365 166 14 71 chr12 122018186 122018481 -21767974 - AluJo SINE Alu -30 282 5 727 224 132 88 chr12 122018481 122018629 -21767826 + HAL1b LINE L1 889 1077 -271 23 68 0 0 chr12 122018635 122018679 -21767776 + AT_rich Low_complexity Low_complexity 1 44 0 1315 233 47 52 chr12 122018707 122019114 -21767341 + L1MC5 LINE L1 6693 7097 -864 1324 174 0 13 chr12 122019118 122019348 -21767107 + AluJo SINE Alu 77 303 -9 1125 182 49 154 chr12 122019358 122019908 -21766547 + L1MC5 LINE L1 7100 7591 -370 1055 163 0 0 chr12 122019919 122020079 -21766376 - AluJb SINE Alu -17 295 136 1162 49 0 0 chr12 122020155 122020299 -21766156 + L1PA4 LINE L1 6009 6152 -3 300 283 108 4 chr12 122020671 122020911 -21765544 + AluSx SINE Alu 38 302 0 341 233 67 60 chr12 122021078 122021228 -21765227 - MIR3 SINE MIR -55 153 3 259 344 8 16 chr12 122021291 122021416 -21765039 - MIR SINE MIR -70 192 69 490 211 42 0 chr12 122021915 122022010 -21764445 + MLT1L LTR MaLR 157 255 -360 834 233 39 131 chr12 122022018 122022508 -21763947 + MLT1H1 LTR MaLR 1 445 -97 325 232 94 116 chr12 122022664 122022845 -21763610 + MLT1J LTR MaLR 316 492 -19 5446 134 59 3 chr12 122022858 122023208 -21763247 - Tigger1 DNA MER2_type 0 2418 2089 2272 52 52 46 chr12 122023208 122023515 -21762940 - AluY SINE Alu -2 309 1 5446 134 59 3 chr12 122023515 122024049 -21762406 - Tigger1 DNA MER2_type -329 2089 1485 4090 117 10 0 chr12 122024055 122024653 -21761802 + Tigger1 DNA MER2_type 380 983 -1435 2083 97 0 0 chr12 122025378 122025637 -21760818 + AluSx SINE Alu 11 269 -43 29 60 0 0 chr12 122025854 122025904 -21760551 + AT_rich Low_complexity Low_complexity 1 50 0 1336 149 9 0 chr12 122025999 122026220 -21760235 + L1MA8 LINE L1 6005 6227 -64 808 171 0 7 chr12 122026220 122026366 -21760089 - AluJb SINE Alu -9 303 159 459 0 0 0 chr12 122026522 122026573 -21759882 + (TA)n Simple_repeat Simple_repeat 2 52 0 2104 234 21 7 chr12 122026579 122027151 -21759304 + L1M4 LINE L1 2557 3136 -3010 717 185 0 23 chr12 122027173 122027303 -21759152 + FLAM_C SINE Alu 11 137 -6 670 166 11 112 chr12 122027810 122027890 -21758565 + MER96B DNA MER1_type? 250 302 -115 1661 173 38 3 chr12 122027890 122028179 -21758276 + AluJb SINE Alu 13 311 -1 670 166 11 112 chr12 122028179 122028285 -21758170 + MER96B DNA MER1_type? 302 417 0 595 242 99 28 chr12 122028981 122029192 -21757263 + MIR SINE MIR 37 262 0 906 196 6 6 chr12 122029291 122029470 -21756985 + AluJo SINE Alu 120 298 -14 2120 135 3 0 chr12 122029498 122029801 -21756654 + AluSx SINE Alu 1 304 -8 21 82 0 0 chr12 122029820 122029869 -21756586 + AT_rich Low_complexity Low_complexity 1 49 0 539 256 12 42 chr12 122030477 122030608 -21755847 + MIR SINE MIR 86 212 -50 886 188 31 62 chr12 122030608 122030832 -21755623 - MER20 DNA MER1_type -2 217 1 539 256 12 42 chr12 122030832 122030868 -21755587 + MIR SINE MIR 212 248 -14 245 254 0 0 chr12 122031889 122031944 -21754511 + CT-rich Low_complexity Low_complexity 1 55 0 4963 142 12 64 chr12 122032320 122033058 -21753397 - L1MA4 LINE L1 -11 6289 5514 242 0 61 0 chr12 122033058 122033091 -21753364 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2084 114 0 47 chr12 122033091 122033241 -21753214 - AluSx SINE Alu -29 283 152 2578 69 0 0 chr12 122033241 122033545 -21752910 - AluY SINE Alu -7 304 1 2084 114 0 47 chr12 122033545 122033691 -21752764 - AluSx SINE Alu -160 152 1 4963 142 12 64 chr12 122033691 122033917 -21752538 - L1MA4 LINE L1 -784 5516 5374 477 110 0 0 chr12 122033926 122033999 -21752456 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3440 188 6 6 chr12 122033999 122034705 -21751750 - L1 LINE L1 -813 5333 4641 248 295 71 9 chr12 122034707 122034819 -21751636 - MIR SINE MIR -96 166 48 372 234 75 0 chr12 122034993 122035087 -21751368 - MER91B DNA MER1_type 0 190 90 489 181 29 101 chr12 122035101 122035146 -21751309 - MER91B DNA MER1_type -60 130 83 1718 192 33 6 chr12 122035146 122035480 -21750975 - MER2 DNA MER2_type 0 344 2 489 181 29 101 chr12 122035480 122035572 -21750883 - MER91B DNA MER1_type -107 83 3 389 301 30 45 chr12 122036044 122036243 -21750212 + MIR SINE MIR 16 211 -51 2141 136 0 3 chr12 122036402 122036733 -21749722 + AluSx SINE Alu 4 333 0 580 300 64 9 chr12 122037414 122037634 -21748821 + MIR SINE MIR 31 262 0 505 187 105 41 chr12 122038140 122038311 -21748144 + MER96B DNA MER1_type? 2 183 -234 189 0 0 0 chr12 122039009 122039030 -21747425 + (T)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr12 122039126 122039151 -21747304 + (GGA)n Simple_repeat Simple_repeat 2 26 0 224 331 6 12 chr12 122040243 122040415 -21746040 + GA-rich Low_complexity Low_complexity 2 172 0 202 24 0 98 chr12 122041265 122041306 -21745149 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 774 241 16 40 chr12 122041435 122041688 -21744767 + L1ME3A LINE L1 5663 5909 -261 317 292 22 56 chr12 122042739 122042917 -21743538 - L2 LINE L2 -1 3312 3141 230 170 70 0 chr12 122042923 122043023 -21743432 + (TA)n Simple_repeat Simple_repeat 2 108 0 9879 70 22 35 chr12 122043027 122044403 -21742052 - SVA Other Other 0 1386 29 216 0 0 0 chr12 122044441 122044465 -21741990 + (GGGAGA)n Simple_repeat Simple_repeat 3 26 0 48 67 0 0 chr12 122044469 122044559 -21741896 + AT_rich Low_complexity Low_complexity 1 90 0 188 135 54 0 chr12 122044565 122044639 -21741816 + (TA)n Simple_repeat Simple_repeat 1 78 0 218 230 80 80 chr12 122044685 122044798 -21741657 - L2 LINE L2 -178 3135 3023 2810 224 73 30 chr12 122044809 122045581 -21740874 - L1ME1 LINE L1 -5 6161 5363 224 273 42 14 chr12 122045738 122045881 -21740574 - L2 LINE L2 -337 2977 2831 2000 266 79 99 chr12 122045932 122046527 -21739928 - MLT1G LTR MaLR -12 578 1 195 284 54 27 chr12 122046596 122046670 -21739785 - L2 LINE L2 -72 3200 3125 477 260 130 19 chr12 122047255 122047409 -21739046 + MER5B DNA MER1_type 8 178 0 618 239 75 38 chr12 122047651 122047864 -21738591 - MIR SINE MIR -10 252 32 1798 156 7 3 chr12 122048694 122048983 -21737472 + AluJo SINE Alu 1 290 -22 1871 129 25 11 chr12 122048983 122049300 -21737155 - AluSg SINE Alu 0 321 1 263 300 63 49 chr12 122050208 122050431 -21736024 + L2 LINE L2 2263 2488 -826 361 257 30 0 chr12 122050492 122050593 -21735862 - MIR SINE MIR -50 212 109 828 226 78 16 chr12 122051164 122051407 -21735048 - MIR SINE MIR 0 262 5 368 265 44 37 chr12 122051436 122051572 -21734883 + MIR SINE MIR 49 185 -77 539 335 33 47 chr12 122052013 122052449 -21734006 - L1ME3A LINE L1 -289 5881 5448 2587 187 33 18 chr12 122053541 122054140 -21732315 - L1MB8 LINE L1 -40 6138 5531 289 231 0 0 chr12 122054148 122054200 -21732255 - MER2 DNA MER2_type -9 336 285 1136 197 5 0 chr12 122054249 122054447 -21732008 - MER2 DNA MER2_type -146 199 1 1053 153 6 1 chr12 122054447 122054628 -21731827 - L1P5 LINE L1 -624 5532 5353 1425 250 80 67 chr12 122054928 122055311 -21731144 - MLT1E3 LTR MaLR 0 624 229 1541 192 28 7 chr12 122055311 122055602 -21730853 - AluJb SINE Alu -15 297 1 1425 250 80 67 chr12 122055602 122055829 -21730626 - MLT1E3 LTR MaLR -395 229 6 736 207 59 114 chr12 122056355 122056554 -21729901 + L1MB7 LINE L1 5929 6111 -73 1866 138 10 3 chr12 122056554 122056844 -21729611 - AluSx SINE Alu -20 292 1 736 207 59 114 chr12 122056844 122056915 -21729540 + L1MB7 LINE L1 6111 6184 0 309 258 146 0 chr12 122057234 122057323 -21729132 - L2 LINE L2 0 3272 3171 232 186 0 0 chr12 122057545 122057588 -21728867 - tRNA-Gly-GGA tRNA tRNA -30 45 3 2173 118 0 0 chr12 122057683 122057979 -21728476 + AluSx SINE Alu 1 296 -16 1676 237 51 20 chr12 122058048 122058255 -21728200 - MLT1C LTR MaLR 0 467 268 2192 160 11 78 chr12 122058255 122058718 -21727737 + MSTB1 LTR MaLR 1 432 0 1676 237 51 20 chr12 122058718 122058958 -21727497 - MLT1C LTR MaLR -199 268 6 1523 98 0 10 chr12 122059207 122059411 -21727044 + AluSq SINE Alu 92 293 -20 3425 83 15 8 chr12 122059411 122059883 -21726572 - L1PA13 LINE L1 -17 6146 5672 2156 113 0 3 chr12 122060039 122060331 -21726124 - AluSx SINE Alu -21 291 1 1297 265 64 24 chr12 122060376 122060417 -21726038 - LTR16C LTR ERVL 0 491 453 1707 162 0 65 chr12 122060417 122060738 -21725717 - AluJb SINE Alu -12 300 1 1297 265 64 24 chr12 122060738 122061119 -21725336 - LTR16C LTR ERVL -38 453 52 206 292 15 0 chr12 122061292 122061357 -21725098 + MIR SINE MIR 176 241 -21 725 188 0 15 chr12 122062046 122062179 -21724276 - FLAM_A SINE Alu -2 131 1 2153 110 0 58 chr12 122062182 122062373 -21724082 - AluSx SINE Alu -2 310 144 2146 123 0 3 chr12 122062373 122062675 -21723780 - AluSg SINE Alu -9 301 1 2153 110 0 58 chr12 122062675 122062810 -21723645 - AluSx SINE Alu -168 144 3 830 203 0 7 chr12 122063104 122063257 -21723198 - AluJb SINE Alu -13 299 148 338 336 18 0 chr12 122064235 122064345 -21722110 + MER5B DNA MER1_type 1 112 -66 349 217 0 0 chr12 122064358 122064498 -21721957 - AluJ/monomer SINE Alu 0 373 234 628 166 29 72 chr12 122064636 122064775 -21721680 - MER20 DNA MER1_type -86 133 1 1945 155 3 10 chr12 122064801 122065110 -21721345 - AluJb SINE Alu -2 310 4 298 286 36 0 chr12 122065537 122065621 -21720834 + MER58 DNA MER1_type 7 93 -2327 615 212 0 0 chr12 122065652 122065770 -21720685 - FLAM_C SINE Alu -15 118 1 231 184 138 0 chr12 122065771 122065858 -21720597 + MER58 DNA MER1_type 83 181 -160 218 266 106 0 chr12 122066358 122066452 -21720003 + MIR SINE MIR 126 229 -33 252 298 67 10 chr12 122066525 122066629 -21719826 - MIR SINE MIR -103 159 50 403 94 65 29 chr12 122067174 122067344 -21719111 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 * 482 49 104 12 chr12 122067327 122067491 -21718964 + (TA)n Simple_repeat Simple_repeat 2 180 0 2131 109 0 3 chr12 122067508 122067792 -21718663 - AluSq SINE Alu -30 283 1 2168 199 29 31 chr12 122068086 122068573 -21717882 - MER66B LTR ERV1 0 486 1 2582 207 37 28 chr12 122068833 122069373 -21717082 + MLT2B3 LTR ERVL 1 545 -9 203 244 0 0 chr12 122069613 122069658 -21716797 + MIR SINE MIR 79 123 -139 358 219 0 24 chr12 122069853 122069935 -21716520 - MER116 DNA Mariner 0 80 1 292 302 40 40 chr12 122070499 122070648 -21715807 + MIR SINE MIR 58 206 -56 414 295 30 54 chr12 122070683 122070805 -21715650 - MIR SINE MIR -21 241 123 1279 158 169 19 chr12 122070805 122071065 -21715390 + AluJo SINE Alu 1 299 -3 414 295 30 54 chr12 122071065 122071108 -21715347 - MIR SINE MIR -139 123 80 278 146 0 0 chr12 122071960 122072001 -21714454 - THE1C LTR MaLR 0 428 388 1248 137 39 0 chr12 122072001 122072183 -21714272 + AluSx SINE Alu 1 189 -123 2171 121 3 26 chr12 122072203 122072550 -21713905 - THE1C LTR MaLR -36 339 1 453 266 118 25 chr12 122072809 122073012 -21713443 - MIR SINE MIR -26 236 15 359 284 76 76 chr12 122073022 122073140 -21713315 + L1MC/D LINE L1 5451 5568 -2240 1686 174 0 47 chr12 122073140 122073457 -21712998 + AluJb SINE Alu 1 302 -10 359 284 76 76 chr12 122073457 122073613 -21712842 + L1MC/D LINE L1 5567 5725 -2083 565 246 123 58 chr12 122073645 122073763 -21712692 + HAL1b LINE L1 602 711 -637 789 134 70 19 chr12 122073763 122073920 -21712535 + L1MA8 LINE L1 6121 6285 -6 565 246 123 58 chr12 122073920 122074094 -21712361 + HAL1b LINE L1 711 913 -435 186 43 0 0 chr12 122074101 122074124 -21712331 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 964 170 0 0 chr12 122074130 122074277 -21712178 - AluJb SINE Alu -30 282 136 2603 209 121 70 chr12 122074500 122074711 -21711744 - MER21B LTR ERV1 0 863 664 938 163 19 6 chr12 122074711 122074871 -21711584 - FRAM SINE Alu -4 162 1 2603 209 121 70 chr12 122074871 122075462 -21710993 - MER21B LTR ERV1 -199 664 20 331 276 13 0 chr12 122075470 122075546 -21710909 - MER21B LTR ERV1 -767 96 20 247 306 28 0 chr12 122075572 122075644 -21710811 - MER21B LTR ERV1 -774 89 16 1762 180 3 3 chr12 122075823 122076123 -21710332 - AluJo SINE Alu -8 304 5 1062 162 0 6 chr12 122076875 122077042 -21709413 + FRAM SINE Alu 2 167 -9 235 70 23 23 chr12 122077045 122077088 -21709367 + (GA)n Simple_repeat Simple_repeat 2 44 0 2103 126 3 19 chr12 122077389 122077527 -21708928 + AluSq SINE Alu 1 140 -173 2162 123 0 0 chr12 122077527 122077828 -21708627 + AluSg SINE Alu 1 301 -9 2103 126 3 19 chr12 122077828 122078007 -21708448 + AluSq SINE Alu 140 313 0 293 303 11 0 chr12 122078298 122078387 -21708068 + MIR3 SINE MIR 85 174 -34 226 231 154 13 chr12 122078959 122079037 -21707418 - L1ME LINE L1 -625 5541 5453 1832 198 113 32 chr12 122079333 122079398 -21707057 - L1ME1 LINE L1 -283 5952 5894 2267 95 17 7 chr12 122079398 122079693 -21706762 - AluSx SINE Alu -14 298 1 1832 198 113 32 chr12 122079693 122080121 -21706334 - L1ME1 LINE L1 -341 5894 5419 320 104 21 0 chr12 122080128 122080176 -21706279 - Alu SINE Alu -6 295 247 652 191 9 0 chr12 122080181 122080291 -21706164 - FLAM_C SINE Alu -31 112 2 2760 231 29 35 chr12 122080293 122081167 -21705288 - L1ME1 LINE L1 -782 5433 4566 475 238 71 36 chr12 122081149 122081317 -21705138 - L1ME1 LINE L1 -3653 2562 2389 * 603 300 18 13 chr12 122081334 122081561 -21704894 - L1ME1 LINE L1 -6132 264 37 586 264 7 7 chr12 122082425 122082569 -21703886 - L1ME3 LINE L1 -7 6155 6012 831 153 0 0 chr12 122082675 122082793 -21703662 + FLAM_C SINE Alu 1 118 -15 268 309 11 0 chr12 122082853 122082947 -21703508 + L1M4 LINE L1 4217 4311 -1835 1354 294 56 34 chr12 122083732 122084358 -21702097 + MLT2F LTR ERVL 24 663 0 1953 181 12 55 chr12 122084377 122084781 -21701674 - MLT1B LTR MaLR 0 390 4 382 241 160 27 chr12 122084837 122085024 -21701431 - MIR SINE MIR -18 244 33 2047 179 0 16 chr12 122085168 122085537 -21700918 - MLT1B LTR MaLR -5 385 23 1489 165 29 37 chr12 122085577 122085850 -21700605 + AluJo SINE Alu 42 312 0 244 286 172 62 chr12 122086297 122086489 -21699966 + MIR SINE MIR 7 219 -43 994 131 0 0 chr12 122086616 122086761 -21699694 + THE1C LTR MaLR 231 375 0 454 335 29 36 chr12 122086805 122086830 -21699625 - HAL1 LINE L1 -10 2497 2473 453 167 0 0 chr12 122086830 122086908 -21699547 + MER116 DNA Mariner 3 80 0 454 335 29 36 chr12 122086908 122087157 -21699298 - HAL1 LINE L1 -34 2473 2225 1634 177 25 18 chr12 122088209 122088519 -21697936 - AluJo SINE Alu 0 312 1 394 252 99 60 chr12 122088565 122088794 -21697661 - L1MC4a LINE L1 -311 5810 5663 2829 116 57 21 chr12 122088802 122089278 -21697177 - L1PA16 LINE L1 -4 6162 5670 2413 97 10 0 chr12 122089303 122089611 -21696844 + AluY SINE Alu 1 311 0 1079 172 11 0 chr12 122089624 122089798 -21696657 + AluJb SINE Alu 137 312 0 482 171 0 0 chr12 122089865 122089947 -21696508 + LTR16C LTR ERVL 400 481 -10 218 341 41 24 chr12 122090121 122090244 -21696211 + MIR SINE MIR 19 143 -65 870 168 0 40 chr12 122090311 122090460 -21695995 + AluJo SINE Alu 1 143 -169 1715 119 25 4 chr12 122090468 122090711 -21695744 - AluSq SINE Alu -65 248 1 1190 247 31 14 chr12 122090784 122090962 -21695493 - AluJb SINE Alu -1 301 115 261 0 0 0 chr12 122090962 122090991 -21695464 + (TG)n Simple_repeat Simple_repeat 2 30 0 1190 247 31 14 chr12 122090991 122091104 -21695351 - AluJb SINE Alu -187 115 5 2371 83 0 3 chr12 122091322 122091623 -21694832 - AluY SINE Alu -11 300 1 1607 159 44 34 chr12 122092430 122092725 -21693730 - AluJo SINE Alu -10 302 5 1825 243 41 21 chr12 122092785 122093296 -21693159 - L1ME3 LINE L1 -186 5976 5456 29 0 0 0 chr12 122094029 122094058 -21692397 + AT_rich Low_complexity Low_complexity 1 29 0 285 228 0 0 chr12 122094215 122094294 -21692161 + (TA)n Simple_repeat Simple_repeat 1 79 0 280 280 6 6 chr12 122094321 122094478 -21691977 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 2130 128 0 16 chr12 122095673 122095979 -21690476 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr12 122096007 122096030 -21690425 + AT_rich Low_complexity Low_complexity 1 23 0 2625 46 0 3 chr12 122096205 122096509 -21689946 - AluY SINE Alu -8 303 1 225 196 0 0 chr12 122096841 122096897 -21689558 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 320 271 0 12 chr12 122097161 122097246 -21689209 - MIR SINE MIR -108 154 71 1720 173 7 10 chr12 122097485 122097774 -21688681 + AluJb SINE Alu 1 288 -24 430 319 108 5 chr12 122097793 122097997 -21688458 + MIR SINE MIR 6 230 -32 27 0 0 0 chr12 122098039 122098066 -21688389 + AT_rich Low_complexity Low_complexity 1 27 0 1742 120 10 73 chr12 122098074 122098421 -21688034 + AluJo SINE Alu 1 328 0 287 299 56 19 chr12 122098462 122098569 -21687886 + MIR SINE MIR 36 146 -62 334 265 10 7 chr12 122099083 122099198 -21687257 - MIR SINE MIR -65 143 32 438 240 89 7 chr12 122099198 122099344 -21687111 - MER106B DNA MER1_type 0 1059 902 2187 121 13 0 chr12 122099354 122099659 -21686796 + AluSx SINE Alu 1 309 -3 1877 147 3 3 chr12 122100827 122101113 -21685342 - AluSx SINE Alu -26 286 1 1744 181 0 11 chr12 122101264 122101579 -21684876 - AluJo SINE Alu 0 312 1 253 267 76 46 chr12 122101597 122101718 -21684737 + MIR SINE MIR 70 197 -65 1833 160 3 16 chr12 122101718 122102025 -21684430 + AluJo SINE Alu 1 303 -9 1125 182 49 154 chr12 122102035 122102585 -21683870 + L1MC5 LINE L1 7100 7591 -370 1055 163 0 0 chr12 122102596 122102756 -21683699 - AluJb SINE Alu -17 295 136 1143 56 0 0 chr12 122102832 122102976 -21683479 + L1PA4 LINE L1 6009 6152 -3 2585 101 0 33 chr12 122103053 122103419 -21683036 - MER1A DNA MER1_type 0 529 176 366 87 0 0 chr12 122103420 122103466 -21682989 + Alu SINE Alu 1 46 -253 1370 121 5 0 chr12 122103466 122103656 -21682799 + AluSg/x SINE Alu 110 300 -12 1173 160 6 0 chr12 122103656 122103837 -21682618 - MER1A DNA MER1_type -344 183 2 687 76 29 29 chr12 122103842 122103947 -21682508 + L1MC1 LINE L1 6019 6123 -210 661 186 88 37 chr12 122103958 122104173 -21682282 + L1MC5 LINE L1 7687 7912 -49 2026 147 16 3 chr12 122104208 122104515 -21681940 + AluSx SINE Alu 1 311 -1 913 156 0 56 chr12 122104573 122104733 -21681722 + AluJo SINE Alu 1 151 -161 209 184 0 0 chr12 122104756 122104794 -21681661 + (CA)n Simple_repeat Simple_repeat 2 39 0 1061 198 36 11 chr12 122105282 122105528 -21680927 + L1PA5 LINE L1 5594 5849 -305 1648 50 0 0 chr12 122106366 122106565 -21679890 + L1PA5 LINE L1 5956 6154 0 24 32 0 0 chr12 122106845 122106876 -21679579 + AT_rich Low_complexity Low_complexity 1 31 0 2251 96 10 13 chr12 122106879 122107182 -21679273 + AluSg SINE Alu 1 302 -8 206 286 12 24 chr12 122107606 122107690 -21678765 - L2 LINE L2 -667 2647 2565 205 254 96 0 chr12 122107734 122107824 -21678631 - MER5A DNA MER1_type -83 106 6 257 230 40 14 chr12 122107910 122107984 -21678471 + MIR SINE MIR 117 192 -70 203 270 15 15 chr12 122108537 122108641 -21677814 - MIR SINE MIR -54 208 106 1205 172 0 0 chr12 122108649 122108841 -21677614 + AluJo SINE Alu 1 192 -120 2406 83 0 0 chr12 122108888 122109176 -21677279 + AluSg1 SINE Alu 1 288 -21 812 207 28 0 chr12 122109382 122109561 -21676894 - L1M4 LINE L1 -464 5714 5531 289 231 0 0 chr12 122109569 122109621 -21676834 - MER2 DNA MER2_type -9 336 285 1136 197 5 0 chr12 122109670 122109868 -21676587 - MER2 DNA MER2_type -146 199 1 1039 159 6 1 chr12 122109868 122110049 -21676406 - L1P5 LINE L1 -624 5532 5353 1429 246 82 69 chr12 122110349 122110732 -21675723 - MLT1E3 LTR MaLR 0 624 229 1541 192 28 7 chr12 122110732 122111023 -21675432 - AluJb SINE Alu -15 297 1 1429 246 82 69 chr12 122111023 122111250 -21675205 - MLT1E3 LTR MaLR -395 229 6 716 210 59 114 chr12 122111776 122111975 -21674480 + L1MB7 LINE L1 5929 6111 -73 1853 141 10 3 chr12 122111975 122112265 -21674190 - AluSx SINE Alu -20 292 1 716 210 59 114 chr12 122112265 122112336 -21674119 + L1MB7 LINE L1 6111 6184 0 309 258 146 0 chr12 122112655 122112744 -21673711 - L2 LINE L2 0 3272 3171 232 186 0 0 chr12 122112966 122113009 -21673446 - tRNA-Gly-GGA tRNA tRNA -30 45 3 2173 118 0 0 chr12 122113104 122113400 -21673055 + AluSx SINE Alu 1 296 -16 1676 237 51 20 chr12 122113469 122113676 -21672779 - MLT1C LTR MaLR 0 467 268 2192 160 11 78 chr12 122113676 122114139 -21672316 + MSTB1 LTR MaLR 1 432 0 1676 237 51 20 chr12 122114139 122114379 -21672076 - MLT1C LTR MaLR -199 268 6 1379 122 0 10 chr12 122114630 122114826 -21671629 + AluSq SINE Alu 92 285 -28 2170 141 0 0 chr12 122114981 122115293 -21671162 + AluSx SINE Alu 1 312 0 521 283 0 0 chr12 122115797 122115935 -21670520 + MIR SINE MIR 36 173 -89 1656 171 7 0 chr12 122116053 122116327 -21670128 + AluJb SINE Alu 12 287 -25 2533 166 81 17 chr12 122116588 122117117 -21669338 - L1MD2 LINE L1 -2 6357 5795 1929 155 3 20 chr12 122117581 122117885 -21668570 - AluJb SINE Alu -13 299 1 545 118 11 21 chr12 122118542 122118635 -21667820 - AluSg/x SINE Alu -2 308 217 297 128 0 0 chr12 122118703 122118750 -21667705 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 135 42 21 chr12 122118774 122118870 -21667585 + (TA)n Simple_repeat Simple_repeat 2 99 0 1986 122 7 30 chr12 122119574 122119869 -21666586 - AluSc SINE Alu -21 288 1 215 278 0 56 chr12 122119979 122120051 -21666404 - MIR SINE MIR -118 144 77 487 230 9 0 chr12 122120339 122120452 -21666003 + MIR SINE MIR 76 189 -73 200 141 94 82 chr12 122120455 122120540 -21665915 - MIR SINE MIR -3 259 174 210 41 20 122 chr12 122120645 122120678 -21665777 + (TAA)n Simple_repeat Simple_repeat 2 30 -15 1917 118 37 0 chr12 122120678 122120948 -21665507 + AluSx SINE Alu 5 284 -28 210 41 20 122 chr12 122120948 122120963 -21665492 + (TAA)n Simple_repeat Simple_repeat 30 45 0 1254 60 0 22 chr12 122121348 122121532 -21664923 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 884 140 0 32 chr12 122121533 122121719 -21664736 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2122 133 7 0 chr12 122121723 122122023 -21664432 - AluSx SINE Alu -10 302 1 234 240 19 19 chr12 122122036 122122140 -21664315 + CT-rich Low_complexity Low_complexity 1 104 0 252 298 67 10 chr12 122122553 122122657 -21663798 + MIR SINE MIR 50 159 -103 218 266 106 0 chr12 122122730 122122824 -21663631 - MIR SINE MIR -33 229 126 1381 169 90 50 chr12 122123192 122123471 -21662984 + AluJo SINE Alu 13 302 -10 24 32 0 0 chr12 122123491 122123522 -21662933 + AT_rich Low_complexity Low_complexity 1 31 0 2135 113 40 3 chr12 122123634 122123935 -21662520 + AluSx SINE Alu 1 312 0 2119 89 14 4 chr12 122123942 122124222 -21662233 + AluSc SINE Alu 1 283 -26 2300 73 14 0 chr12 122124698 122124985 -21661470 + AluSp SINE Alu 1 291 -22 2094 111 7 0 chr12 122125789 122126068 -21660387 - AluSx SINE Alu -31 281 1 538 298 22 28 chr12 122126338 122126516 -21659939 + L2 LINE L2 3137 3313 0 249 139 0 0 chr12 122126516 122126559 -21659896 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 1747 162 0 0 chr12 122126853 122127124 -21659331 + AluSx SINE Alu 7 277 -35 198 103 0 0 chr12 122127138 122127167 -21659288 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 1701 154 43 0 chr12 122127658 122127957 -21658498 - AluJb SINE Alu 0 312 1 197 204 0 23 chr12 122128085 122128129 -21658326 - MER5B DNA MER1_type -16 162 120 430 271 15 80 chr12 122128137 122128336 -21658119 + AluJb SINE Alu 16 201 -101 1766 77 4 4 chr12 122128465 122128700 -21657755 - AluSc SINE Alu -74 235 1 275 206 21 21 chr12 122129156 122129253 -21657202 + (TA)n Simple_repeat Simple_repeat 1 97 0 283 153 0 0 chr12 122129253 122129299 -21657156 - Alu SINE Alu -18 282 242 303 222 67 44 chr12 122129354 122129444 -21657011 - L1MC4 LINE L1 -1339 6703 6612 375 276 23 0 chr12 122129662 122129749 -21656706 + L1MC4 LINE L1 6615 6703 -1339 353 311 0 11 chr12 122129712 122129802 -21656653 - L1MC4 LINE L1 -1340 6702 6614 * 379 287 0 0 chr12 122129982 122130076 -21656379 + MIR SINE MIR 51 144 -64 2283 92 0 13 chr12 122130085 122130401 -21656054 + AluSx SINE Alu 1 312 0 347 86 52 0 chr12 122130453 122130511 -21655944 + GA-rich Low_complexity Low_complexity 4 64 0 792 152 0 22 chr12 122130515 122130653 -21655802 + FLAM_C SINE Alu 7 141 -2 412 213 254 0 chr12 122130697 122130819 -21655636 - MIR SINE MIR -10 252 100 291 309 202 14 chr12 122130900 122131123 -21655332 + L2 LINE L2 2594 2858 -456 * 298 284 24 134 chr12 122131113 122131169 -21655286 + L2 LINE L2 2971 3032 -240 2141 116 7 0 chr12 122131169 122131472 -21654983 + AluSx SINE Alu 1 305 -7 298 284 24 134 chr12 122131472 122131707 -21654748 + L2 LINE L2 3032 3230 -42 181 268 0 36 chr12 122131709 122131765 -21654690 - MIR SINE MIR -139 69 16 310 278 100 0 chr12 122131850 122131940 -21654515 - MER117 DNA MER1_type -2 195 97 770 143 0 45 chr12 122131997 122132130 -21654325 + FLAM_A SINE Alu 1 127 -6 205 253 88 44 chr12 122132245 122132336 -21654119 - MIR SINE MIR -85 123 29 1046 205 14 0 chr12 122132523 122132738 -21653717 + AluJb SINE Alu 1 218 -94 26 64 0 0 chr12 122132750 122132797 -21653658 + AT_rich Low_complexity Low_complexity 1 47 0 2101 116 3 0 chr12 122132797 122133090 -21653365 + AluSx SINE Alu 1 294 -18 472 196 152 0 chr12 122133096 122133208 -21653247 - L1MD3 LINE L1 -137 7858 7730 222 184 0 0 chr12 122134005 122134043 -21652412 + (CACG)n Simple_repeat Simple_repeat 1 38 0 2226 93 0 0 chr12 122135003 122135303 -21651152 + AluSc SINE Alu 1 300 -9 2279 66 23 0 chr12 122135304 122135606 -21650849 + AluY SINE Alu 2 310 -1 207 0 0 0 chr12 122136757 122136780 -21649675 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1689 147 11 4 chr12 122136785 122137058 -21649397 - AluJo SINE Alu -31 281 7 793 122 22 72 chr12 122137082 122137221 -21649234 - FLAM_C SINE Alu -1 132 1 195 114 0 0 chr12 122137453 122137488 -21648967 + (TG)n Simple_repeat Simple_repeat 1 35 0 2063 122 0 16 chr12 122137732 122138043 -21648412 - AluSx SINE Alu 0 312 7 1838 125 11 4 chr12 122138261 122138562 -21647893 - AluSx SINE Alu 0 303 1 341 294 40 8 chr12 122138706 122138832 -21647623 + L1ME4a LINE L1 5992 6121 0 1671 142 18 14 chr12 122138897 122139198 -21647257 + AluSq SINE Alu 1 302 0 192 325 84 24 chr12 122139207 122139290 -21647165 - MIR SINE MIR -87 121 34 4307 160 11 40 chr12 122139341 122139471 -21646984 + L1MB3 LINE L1 5378 5510 -673 1633 177 0 10 chr12 122139471 122139765 -21646690 + AluJo SINE Alu 1 291 -21 4307 160 11 40 chr12 122139765 122139880 -21646575 + L1MB3 LINE L1 5510 5627 -556 3456 81 18 0 chr12 122139880 122140322 -21646133 - MLT2A2 LTR ERVL 0 453 4 4307 160 11 40 chr12 122140322 122140905 -21645550 + L1MB3 LINE L1 5627 6183 0 21 0 0 0 chr12 122140979 122141000 -21645455 + AT_rich Low_complexity Low_complexity 1 21 0 1829 154 3 0 chr12 122141066 122141365 -21645090 + AluSx SINE Alu 1 300 -12 802 223 0 0 chr12 122141491 122141657 -21644798 - FRAM SINE Alu -7 169 4 445 158 148 10 chr12 122141992 122142093 -21644362 - Charlie4 DNA MER1_type -22 1939 1825 1858 112 10 51 chr12 122142114 122142427 -21644028 + AluSx SINE Alu 1 300 -12 432 250 17 128 chr12 122142506 122142628 -21643827 - MIR SINE MIR -75 187 90 2256 131 5 32 chr12 122142628 122143002 -21643453 + THE1B LTR MaLR 1 364 0 432 250 17 128 chr12 122143002 122143059 -21643396 - MIR SINE MIR -172 90 28 252 167 0 0 chr12 122143111 122143159 -21643296 + (ATG)n Simple_repeat Simple_repeat 1 48 0 844 170 91 0 chr12 122143176 122143341 -21643114 - MIR SINE MIR -38 224 45 2170 111 0 0 chr12 122143381 122143679 -21642776 + AluSx SINE Alu 1 298 -14 262 289 44 35 chr12 122143702 122143816 -21642639 + L2 LINE L2 3154 3268 -45 1834 172 0 0 chr12 122143817 122144114 -21642341 + AluSx SINE Alu 13 309 -3 252 269 26 13 chr12 122144452 122144530 -21641925 - MIR3 SINE MIR -13 195 117 1012 55 30 18 chr12 122145109 122145274 -21641181 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 338 117 33 0 chr12 122145466 122145526 -21640929 + CT-rich Low_complexity Low_complexity 3 64 0 1483 177 0 19 chr12 122145527 122145787 -21640668 - AluJo SINE Alu -57 255 1 198 281 88 0 chr12 122145858 122145915 -21640540 - L2 LINE L2 0 3272 3211 2049 121 10 3 chr12 122146398 122146705 -21639750 - AluSx SINE Alu 0 312 4 579 199 6 13 chr12 122146713 122146869 -21639586 + CT-rich Low_complexity Low_complexity 4 158 0 1319 251 30 12 chr12 122146963 122147294 -21639161 - LTR16C LTR ERVL -2 489 153 1691 149 46 85 chr12 122147393 122147783 -21638672 - THE1C LTR MaLR 0 375 1 7507 130 38 11 chr12 122147783 122148906 -21637549 - THE1C-int LTR MaLR 0 1580 427 264 61 0 0 chr12 122148946 122148979 -21637476 - MER61C LTR ERV1 0 434 402 924 158 0 0 chr12 122148979 122149137 -21637318 + AluSg/x SINE Alu 155 312 0 899 157 98 49 chr12 122149139 122149458 -21636997 - MER61C LTR ERV1 -30 404 14 243 260 0 0 chr12 122149425 122149475 -21636980 - LTR28 LTR ERV1 -958 62 13 * 2225 98 10 3 chr12 122149476 122149783 -21636672 - THE1C-int LTR MaLR -1250 330 22 1671 120 73 92 chr12 122149783 122150157 -21636298 - THE1C LTR MaLR -9 419 1 451 307 28 17 chr12 122150710 122150889 -21635566 + MLT1K LTR MaLR 157 337 -251 219 139 0 0 chr12 122150988 122151024 -21635431 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 326 282 63 14 chr12 122151025 122151167 -21635288 + MLT1K LTR MaLR 413 561 -27 819 159 0 21 chr12 122151301 122151446 -21635009 - FLAM_C SINE Alu -1 142 1 1833 165 0 16 chr12 122151446 122151749 -21634706 - AluJb SINE Alu -14 298 1 1914 135 26 0 chr12 122152089 122152392 -21634063 - AluSx SINE Alu -1 311 1 304 313 121 6 chr12 122152407 122152589 -21633866 - MIR SINE MIR 0 262 60 303 219 34 39 chr12 122152644 122152762 -21633693 - L1MC5 LINE L1 -1 8041 7810 917 201 12 0 chr12 122152797 122152961 -21633494 - AluJo/FRAM SINE Alu 0 302 137 1145 141 51 0 chr12 122152963 122153140 -21633315 - AluSx SINE Alu -116 196 11 1466 153 80 4 chr12 122153156 122153431 -21633024 - AluJo SINE Alu -16 296 1 1033 206 12 4 chr12 122153431 122153679 -21632776 - L1 LINE L1 -1115 5031 4782 1990 145 0 0 chr12 122153691 122154002 -21632453 - AluSx SINE Alu -1 311 1 1698 227 6 0 chr12 122154006 122154363 -21632092 - L1ME1 LINE L1 -265 5901 5543 4922 79 12 0 chr12 122154364 122155007 -21631448 - L1PA8 LINE L1 0 6172 5522 508 257 111 39 chr12 122155067 122155374 -21631081 - L1MC5 LINE L1 -370 7591 7263 664 220 42 97 chr12 122155453 122155636 -21630819 - L1MC4 LINE L1 -730 7231 7094 856 213 0 0 chr12 122155636 122155800 -21630655 + FRAM SINE Alu 1 164 -2 664 220 42 97 chr12 122155800 122155958 -21630497 - L1MC4 LINE L1 -867 7094 6929 264 258 75 57 chr12 122156259 122156418 -21630037 - MLT1K LTR MaLR -60 528 367 860 302 68 31 chr12 122156654 122156846 -21629609 + LTR16C LTR ERVL 97 280 -211 3512 118 10 4 chr12 122156846 122157354 -21629101 - MER9 LTR ERVK 0 511 1 860 302 68 31 chr12 122157354 122157542 -21628913 + LTR16C LTR ERVL 280 491 0 272 223 36 18 chr12 122157980 122158092 -21628363 + (TA)n Simple_repeat Simple_repeat 2 115 0 23 33 0 0 chr12 122158116 122158146 -21628309 + AT_rich Low_complexity Low_complexity 1 30 0 1760 156 3 17 chr12 122158146 122158448 -21628007 - AluJb SINE Alu -14 298 1 1877 104 113 37 chr12 122158574 122158698 -21627757 - L1MB2 LINE L1 -2 6169 6056 2169 117 0 0 chr12 122158698 122158997 -21627458 + AluSx SINE Alu 1 299 -13 1877 104 113 37 chr12 122158997 122159199 -21627256 - L1MB2 LINE L1 -115 6056 5818 2002 118 28 0 chr12 122159199 122159488 -21626967 + AluSx SINE Alu 1 297 -15 1155 166 20 40 chr12 122159624 122159877 -21626578 + AluJo SINE Alu 50 297 -15 282 182 76 0 chr12 122159877 122159943 -21626512 + MLT1C LTR MaLR 38 108 -359 200 232 14 87 chr12 122159994 122160063 -21626392 + MIR3 SINE MIR 100 163 -45 1344 213 17 86 chr12 122160083 122160170 -21626285 + MLT1C LTR MaLR 88 179 -288 2001 118 0 44 chr12 122160170 122160345 -21626110 - AluSx SINE Alu -4 308 152 2387 76 0 0 chr12 122160345 122160646 -21625809 - AluSg SINE Alu -9 301 1 2001 118 0 44 chr12 122160646 122160791 -21625664 - AluSx SINE Alu -160 152 2 1344 213 17 86 chr12 122160791 122161111 -21625344 + MLT1C LTR MaLR 179 467 0 999 238 53 71 chr12 122161742 122162153 -21624302 - L1ME1 LINE L1 -86 6080 5677 1004 186 91 5 chr12 122162163 122162383 -21624072 + AluJo SINE Alu 11 249 -63 253 118 0 0 chr12 122162399 122162433 -21624022 - AluJ/FRAM SINE Alu -49 253 220 2329 74 0 0 chr12 122162451 122162747 -21623708 - AluY SINE Alu -15 296 1 180 0 0 0 chr12 122162765 122162785 -21623670 + (A)n Simple_repeat Simple_repeat 1 20 0 334 239 43 11 chr12 122162789 122162881 -21623574 - L1ME1 LINE L1 -483 5683 5589 1025 218 32 64 chr12 122162894 122163202 -21623253 + L1ME LINE L1 5011 5327 -837 1431 153 122 0 chr12 122163202 122163464 -21622991 + AluJb SINE Alu 1 294 -18 1025 218 32 64 chr12 122163464 122163475 -21622980 + L1ME LINE L1 5327 5337 -827 1215 156 19 134 chr12 122163475 122163829 -21622626 + AluJb SINE Alu 1 317 0 1540 120 139 0 chr12 122163832 122164098 -21622357 + AluSx SINE Alu 1 303 -9 1025 218 32 64 chr12 122164098 122164380 -21622075 + L1ME LINE L1 5339 5600 -564 217 196 22 0 chr12 122164412 122164458 -21621997 + L2 LINE L2 2734 2780 -534 27 49 0 0 chr12 122164465 122164506 -21621949 + AT_rich Low_complexity Low_complexity 1 41 0 278 307 242 23 chr12 122164511 122164908 -21621547 + L2 LINE L2 2830 3313 0 216 268 18 18 chr12 122164930 122164986 -21621469 - MIR SINE MIR -176 86 31 1569 173 19 19 chr12 122164996 122165308 -21621147 + AluJo SINE Alu 1 312 0 1878 144 0 3 chr12 122165350 122165668 -21620787 - AluSx SINE Alu 0 317 1 2227 66 7 0 chr12 122165670 122165959 -21620496 - AluY SINE Alu 0 311 21 21 0 0 0 chr12 122165962 122165983 -21620472 + AT_rich Low_complexity Low_complexity 1 21 0 290 234 138 11 chr12 122165996 122166090 -21620365 - MER46C DNA MER2_type -232 106 1 331 226 36 12 chr12 122166564 122166648 -21619807 - MIR3 SINE MIR -19 189 104 262 111 0 0 chr12 122166723 122166759 -21619696 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 726 145 17 28 chr12 122166760 122166939 -21619516 + CT-rich Low_complexity Low_complexity 3 179 0 1015 170 0 18 chr12 122166973 122167138 -21619317 - FRAM SINE Alu -3 163 2 691 279 74 8 chr12 122167196 122167440 -21619015 + MIR SINE MIR 2 261 -1 217 307 129 21 chr12 122167706 122167846 -21618609 + MIR SINE MIR 56 210 -52 2327 74 0 7 chr12 122168483 122168793 -21617662 + AluSp SINE Alu 1 308 -5 400 244 16 47 chr12 122168869 122168986 -21617469 - MIR SINE MIR -83 179 65 2081 68 0 0 chr12 122168986 122169250 -21617205 + AluY SINE Alu 44 307 -4 1691 118 15 8 chr12 122169514 122169777 -21616678 + AluSx SINE Alu 11 275 -37 666 219 67 81 chr12 122169929 122170139 -21616316 + MER20 DNA MER1_type 7 213 -6 471 155 0 0 chr12 122170559 122170643 -21615812 + (CA)n Simple_repeat Simple_repeat 2 85 0 958 195 95 0 chr12 122170867 122171067 -21615388 - MER20 DNA MER1_type 0 219 1 1772 152 7 3 chr12 122171110 122171400 -21615055 - AluJb SINE Alu -11 301 11 1948 106 14 0 chr12 122171489 122171771 -21614684 + AluSx SINE Alu 10 295 -17 1816 152 3 0 chr12 122171844 122172164 -21614291 + AluSq SINE Alu 1 321 0 2223 95 0 9 chr12 122172164 122172480 -21613975 + AluSp SINE Alu 1 313 0 191 300 79 50 chr12 122173143 122173237 -21613218 - MIR SINE MIR -9 253 152 1992 138 0 3 chr12 122173237 122173548 -21612907 - AluSx SINE Alu -2 310 1 191 300 79 50 chr12 122173548 122173593 -21612862 - MIR SINE MIR -110 152 110 25 0 0 0 chr12 122173598 122173623 -21612832 + AT_rich Low_complexity Low_complexity 1 25 0 785 165 0 24 chr12 122173623 122173750 -21612705 - FLAM_C SINE Alu -16 127 4 1656 149 14 69 chr12 122173751 122174101 -21612354 - L1MA10 LINE L1 -32 6302 5972 237 65 0 0 chr12 122174101 122174132 -21612323 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1308 154 70 37 chr12 122174138 122174411 -21612044 - AluJo SINE Alu -30 282 1 1913 138 0 20 chr12 122174718 122175045 -21611410 + AluSq SINE Alu 1 313 0 2064 132 0 0 chr12 122175559 122175863 -21610592 + AluSg SINE Alu 1 304 -6 1012 141 0 6 chr12 122176131 122176287 -21610168 - AluSg/x SINE Alu -37 273 119 1272 148 0 0 chr12 122176455 122176651 -21609804 - AluSx SINE Alu -106 206 11 2022 130 13 0 chr12 122176913 122177212 -21609243 + AluSx SINE Alu 1 303 -9 872 187 40 67 chr12 122177292 122177517 -21608938 + MER20 DNA MER1_type 1 219 0 520 244 50 25 chr12 122177595 122177755 -21608700 + MIR SINE MIR 88 251 -11 2413 68 10 0 chr12 122177780 122178073 -21608382 + AluY SINE Alu 1 296 -15 855 167 7 0 chr12 122178083 122178221 -21608234 + AluJo SINE Alu 1 139 -173 2179 115 0 0 chr12 122178249 122178537 -21607918 + AluSx SINE Alu 1 288 -24 304 0 89 0 chr12 122178561 122178617 -21607838 + (TA)n Simple_repeat Simple_repeat 1 61 0 1151 112 6 0 chr12 122178723 122178902 -21607553 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 299 130 19 0 chr12 122178905 122178959 -21607496 + CT-rich Low_complexity Low_complexity 2 56 0 243 79 0 0 chr12 122178959 122178997 -21607458 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 246 0 33 chr12 122179585 122179646 -21606809 + MIR SINE MIR 85 143 -119 1228 129 0 74 chr12 122179656 122179873 -21606582 + AluJo SINE Alu 14 214 -98 2239 96 0 7 chr12 122180720 122181011 -21605444 + AluSx SINE Alu 1 289 -23 618 82 0 0 chr12 122181024 122181109 -21605346 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 2138 111 14 0 chr12 122181270 122181558 -21604897 + AluSx SINE Alu 1 292 -20 2208 110 10 3 chr12 122181896 122182206 -21604249 - AluSx SINE Alu 0 312 1 583 90 0 0 chr12 122182591 122182669 -21603786 + MADE1 DNA Mariner 1 78 -2 1817 118 30 44 chr12 122182775 122183072 -21603383 + AluSq SINE Alu 1 293 -20 2109 137 0 0 chr12 122183089 122183373 -21603082 + AluSx SINE Alu 1 284 -28 2892 169 57 34 chr12 122183859 122184479 -21601976 + LTR27 LTR ERV1 3 636 0 358 290 10 10 chr12 122184986 122185086 -21601369 + L2 LINE L2 3210 3309 -4 21 36 0 0 chr12 122185137 122185165 -21601290 + AT_rich Low_complexity Low_complexity 1 28 0 753 123 0 0 chr12 122185198 122185304 -21601151 + AluSg/x SINE Alu 199 304 -8 1156 311 70 18 chr12 122185502 122186129 -21600326 + MLT2F LTR ERVL 4 663 0 2005 170 18 50 chr12 122186148 122186548 -21599907 - MLT1B LTR MaLR 0 390 4 246 229 202 44 chr12 122186604 122186787 -21599668 - MIR SINE MIR -18 244 33 1812 198 3 22 chr12 122186931 122187300 -21599155 - MLT1B LTR MaLR -5 385 24 1474 176 32 21 chr12 122187306 122187590 -21598865 + AluJo SINE Alu 6 292 -20 223 264 47 93 chr12 122188037 122188166 -21598289 + MIR SINE MIR 7 129 -133 413 276 79 93 chr12 122188304 122188618 -21597837 + LTR16B LTR ERVL 37 354 -110 216 0 0 0 chr12 122188618 122188642 -21597813 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2375 57 3 0 chr12 122188652 122188934 -21597521 - AluY SINE Alu -24 287 5 1272 183 3 108 chr12 122188941 122189142 -21597313 - AluJo SINE Alu 0 302 148 1837 144 3 21 chr12 122189142 122189433 -21597022 - AluSx SINE Alu -26 286 1 1272 183 3 108 chr12 122189433 122189564 -21596891 - AluJo SINE Alu -154 148 5 413 276 79 93 chr12 122189564 122189661 -21596794 + LTR16B LTR ERVL 369 461 -3 21 36 0 0 chr12 122189681 122189709 -21596746 + AT_rich Low_complexity Low_complexity 1 28 0 188 35 35 0 chr12 122189964 122189993 -21596462 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1665 188 0 11 chr12 122189997 122190279 -21596176 - AluJo SINE Alu -31 281 3 2462 116 36 0 chr12 122190488 122190850 -21595605 + THE1C LTR MaLR 1 375 0 412 192 0 0 chr12 122190919 122190997 -21595458 + MER116 DNA Mariner 3 80 0 424 350 16 20 chr12 122190997 122191251 -21595204 - HAL1 LINE L1 -30 2477 2225 3107 179 37 12 chr12 122191592 122192242 -21594213 - L1MB8 LINE L1 -6 6172 5507 239 219 0 0 chr12 122192244 122192285 -21594170 - MER2 DNA MER2_type -20 325 285 1194 204 0 0 chr12 122192331 122192542 -21593913 - MER2 DNA MER2_type -134 211 1 991 163 6 0 chr12 122192542 122192702 -21593753 - L1MB8 LINE L1 -646 5532 5372 1448 219 91 82 chr12 122193011 122193390 -21593065 - MLT1E3 LTR MaLR 0 624 235 1639 208 0 0 chr12 122193390 122193688 -21592767 - AluJb SINE Alu -14 298 1 1448 219 91 82 chr12 122193688 122193921 -21592534 - MLT1E3 LTR MaLR -389 235 6 696 224 159 0 chr12 122194452 122194595 -21591860 + L1MB7 LINE L1 5937 6056 -128 1748 158 3 13 chr12 122194595 122194893 -21591562 - AluSg SINE Alu -15 295 1 696 224 159 0 chr12 122194893 122194963 -21591492 + L1MB7 LINE L1 6056 6184 0 2211 81 0 30 chr12 122195027 122195324 -21591131 + AluY SINE Alu 1 288 -23 384 209 133 9 chr12 122195579 122195684 -21590771 - L2 LINE L2 0 3272 3155 1928 150 10 0 chr12 122196024 122196331 -21590124 + AluSx SINE Alu 1 310 -2 1732 231 44 24 chr12 122196406 122196618 -21589837 - MLT1C LTR MaLR 0 467 261 2179 160 11 78 chr12 122196618 122197080 -21589375 + MSTB1 LTR MaLR 2 432 0 1732 231 44 24 chr12 122197080 122197325 -21589130 - MLT1C LTR MaLR -206 261 1 23 54 0 0 chr12 122197391 122197428 -21589027 + AT_rich Low_complexity Low_complexity 1 37 0 1360 146 0 9 chr12 122197570 122197789 -21588666 + AluSq SINE Alu 92 308 -5 556 269 14 0 chr12 122198425 122198570 -21587885 + MIR SINE MIR 36 182 -80 1646 197 3 0 chr12 122198672 122198956 -21587499 + AluJb SINE Alu 3 287 -25 2325 162 78 55 chr12 122199220 122199735 -21586720 - L1MD2 LINE L1 -2 6357 5827 2435 96 3 0 chr12 122199735 122200047 -21586408 - AluSp SINE Alu 0 313 1 2325 162 78 55 chr12 122200047 122200081 -21586374 - L1MD2 LINE L1 -532 5827 5795 1773 171 10 3 chr12 122200566 122200859 -21585596 - AluJb SINE Alu -17 295 1 1105 146 0 0 chr12 122201213 122201371 -21585084 + AluSg/x SINE Alu 133 290 -22 424 160 0 13 chr12 122201497 122201572 -21584883 + FLAM SINE Alu 44 117 -26 21 0 0 0 chr12 122201573 122201594 -21584861 + AT_rich Low_complexity Low_complexity 1 21 0 1524 263 78 43 chr12 122201771 122202062 -21584393 - MLT1E LTR MaLR 0 593 313 2102 128 10 19 chr12 122202062 122202375 -21584080 - AluJo SINE Alu -2 310 1 1524 263 78 43 chr12 122202375 122202635 -21583820 - MLT1E LTR MaLR -280 313 23 326 259 82 41 chr12 122203242 122203389 -21583066 + L1ME LINE L1 5565 5717 -404 1207 186 0 18 chr12 122203645 122203866 -21582589 - AluJo SINE Alu -15 297 81 506 150 0 0 chr12 122203868 122203948 -21582507 + L1MA9 LINE L1 5902 5981 -331 411 162 29 0 chr12 122203948 122204016 -21582439 - AluJ/FLAM SINE Alu -232 70 1 810 317 99 44 chr12 122204100 122204535 -21581920 - LTR16C LTR ERVL 0 491 33 261 272 40 48 chr12 122204585 122204710 -21581745 - L2 LINE L2 -82 3231 3108 4167 152 48 3 chr12 122204876 122205129 -21581326 + L1MA9 LINE L1 5520 5760 -552 447 78 0 0 chr12 122205129 122205193 -21581262 + (CA)n Simple_repeat Simple_repeat 2 65 0 4167 152 48 3 chr12 122205193 122205669 -21580786 + L1MA9 LINE L1 5760 6282 -30 294 116 58 14 chr12 122205702 122205771 -21580684 + GA-rich Low_complexity Low_complexity 4 75 0 310 334 69 47 chr12 122205788 122206105 -21580350 + L1MEd LINE L1 237 560 -5559 2710 270 84 42 chr12 122206327 122207554 -21578901 - L2 LINE L2 -1068 2246 969 368 327 42 6 chr12 122207747 122207915 -21578540 - L2 LINE L2 -452 2862 2689 681 256 158 32 chr12 122207950 122208388 -21578067 + HAL1 LINE L1 1982 2474 -33 265 326 88 26 chr12 122208710 122208903 -21577552 - L2 LINE L2 -613 2701 2497 2768 92 8 5 chr12 122209133 122209501 -21576954 + THE1C LTR MaLR 5 373 -2 231 224 20 0 chr12 122209553 122209602 -21576853 + MLT1J1 LTR MaLR 345 394 -52 1043 216 5 15 chr12 122209653 122209857 -21576598 - MER20 DNA MER1_type -16 203 2 228 67 0 0 chr12 122209900 122209930 -21576525 + (TATAA)n Simple_repeat Simple_repeat 1 30 0 2049 110 23 32 chr12 122210812 122211120 -21575335 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr12 122211147 122211168 -21575287 + AT_rich Low_complexity Low_complexity 1 21 0 186 283 19 0 chr12 122211629 122211682 -21574773 + MIR SINE MIR 43 96 -112 873 152 8 0 chr12 122211778 122211910 -21574545 + AluJb SINE Alu 1 133 -179 1746 181 0 4 chr12 122211913 122212190 -21574265 + AluJo SINE Alu 1 276 -36 23 0 0 0 chr12 122212229 122212252 -21574203 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chr12 122212252 122212285 -21574170 + (TG)n Simple_repeat Simple_repeat 2 34 0 1291 244 76 72 chr12 122212288 122212826 -21573629 + MLT1H1 LTR MaLR 16 555 0 228 303 40 10 chr12 122212828 122212927 -21573528 - MIR SINE MIR -90 118 17 1068 195 9 0 chr12 122213075 122213285 -21573170 + L1MC3 LINE L1 7047 7258 -527 1140 231 107 52 chr12 122213287 122213383 -21573072 - MER39 LTR ERV1 -1 706 617 2283 92 0 0 chr12 122213383 122213710 -21572745 - AluSg SINE Alu 0 327 1 1140 231 107 52 chr12 122213710 122214100 -21572355 - MER39 LTR ERV1 -90 617 1 2515 168 46 13 chr12 122214112 122214587 -21571868 + L1MC3 LINE L1 7281 7771 -14 * 3391 136 20 11 chr12 122214579 122215131 -21571324 + L1MA7 LINE L1 5474 6030 -261 36 0 0 0 chr12 122215180 122215216 -21571239 + AT_rich Low_complexity Low_complexity 1 36 0 1295 147 34 30 chr12 122215217 122215319 -21571136 + L1MA7 LINE L1 6020 6120 -171 2506 67 0 0 chr12 122215319 122215618 -21570837 + AluY SINE Alu 1 299 -12 1295 147 34 30 chr12 122215618 122215780 -21570675 + L1MA7 LINE L1 6120 6285 -6 250 327 167 18 chr12 122215932 122216100 -21570355 + MIR SINE MIR 20 212 -50 212 237 0 34 chr12 122216265 122216324 -21570131 + T-rich Low_complexity Low_complexity 1 57 0 234 259 0 0 chr12 122216369 122216423 -21570032 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 300 234 92 35 chr12 122216727 122216868 -21569587 + MIR3 SINE MIR 9 157 -51 572 258 26 107 chr12 122217374 122217645 -21568810 + L1ME1 LINE L1 5477 5725 -396 2131 129 0 20 chr12 122217714 122218016 -21568439 - AluSx SINE Alu -16 296 1 25 51 0 0 chr12 122218232 122218271 -21568184 + AT_rich Low_complexity Low_complexity 1 39 0 742 246 153 24 chr12 122218464 122218792 -21567663 + L1ME1 LINE L1 5809 6148 -18 575 136 0 18 chr12 122219203 122219313 -21567142 + AluSp/q SINE Alu 206 313 0 634 278 37 0 chr12 122219545 122219732 -21566723 + MIR SINE MIR 69 262 0 474 188 5 168 chr12 122219774 122219976 -21566479 - MIR SINE MIR -13 249 81 316 222 230 0 chr12 122220073 122220199 -21566256 + MIR SINE MIR 39 193 -69 2225 110 3 0 chr12 122220207 122220497 -21565958 + AluSx SINE Alu 1 291 -21 3423 81 14 19 chr12 122220653 122221125 -21565330 + L1PA13 LINE L1 5672 6143 -20 2151 97 7 3 chr12 122221125 122221415 -21565040 - AluSg SINE Alu -19 291 1 2145 114 3 7 chr12 122221506 122221796 -21564659 - AluSq SINE Alu -24 289 1 1265 215 41 60 chr12 122222378 122222797 -21563658 - L1ME3A LINE L1 -214 5956 5546 470 206 24 56 chr12 122223361 122223487 -21562968 + L1MC4 LINE L1 7783 7904 -138 354 266 0 53 chr12 122223514 122223702 -21562753 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 * 479 294 0 11 chr12 122223566 122223818 -21562637 + (TATATG)n Simple_repeat Simple_repeat 1 249 0 450 302 0 0 chr12 122223807 122223986 -21562469 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 318 362 0 0 chr12 122223958 122224135 -21562320 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 * 345 286 22 22 chr12 122224080 122224278 -21562177 + (TAGA)n Simple_repeat Simple_repeat 1 198 0 437 193 11 0 chr12 122224278 122224366 -21562089 + L1MC4 LINE L1 7925 8013 -29 246 275 87 0 chr12 122224383 122224452 -21562003 - HAL1b LINE L1 -49 1299 1225 3370 112 16 2 chr12 122224530 122225020 -21561435 - L1PA14 LINE L1 0 6161 5665 378 246 18 18 chr12 122225202 122225316 -21561139 - L1ME LINE L1 -361 5760 5647 2182 125 3 0 chr12 122225381 122225684 -21560771 - AluSx SINE Alu -8 304 1 460 268 70 0 chr12 122225712 122225869 -21560586 - MIR SINE MIR -18 244 77 276 320 49 4 chr12 122226247 122226379 -21560076 - MIR SINE MIR -62 146 16 380 327 0 0 chr12 122226453 122226566 -21559889 + MIR SINE MIR 1 113 -149 203 273 124 16 chr12 122226717 122226838 -21559617 + MIR3 SINE MIR 8 141 -67 1638 155 114 0 chr12 122226959 122227223 -21559232 - AluSx SINE Alu -18 294 1 354 244 8 59 chr12 122227365 122227484 -21558971 - MIR SINE MIR -2 260 148 681 279 83 74 chr12 122227504 122227924 -21558531 + MLT1K LTR MaLR 145 568 -20 1828 107 56 102 chr12 122227944 122228337 -21558118 - THE1C LTR MaLR 0 375 1 544 275 16 21 chr12 122228655 122228844 -21557611 + MIR SINE MIR 2 189 -73 24 0 0 0 chr12 122228871 122228895 -21557560 + AT_rich Low_complexity Low_complexity 1 24 0 295 265 195 27 chr12 122229373 122229558 -21556897 + MIR SINE MIR 18 233 -29 1892 252 77 20 chr12 122229558 122230118 -21556337 - MLT1G1 LTR MaLR 0 595 4 2086 133 7 3 chr12 122230118 122230412 -21556043 - AluSx SINE Alu -17 295 1 1549 196 21 0 chr12 122230500 122230785 -21555670 - AluJb SINE Alu 0 312 22 222 319 164 9 chr12 122230821 122230937 -21555518 + MIR SINE MIR 124 257 -5 1989 149 0 0 chr12 122230951 122231267 -21555188 + AluJo SINE Alu 1 316 0 1654 68 5 0 chr12 122231283 122231504 -21554951 + L1PA8 LINE L1 5945 6166 -6 850 242 11 26 chr12 122231504 122231768 -21554687 - MIR SINE MIR 0 262 3 1382 148 10 0 chr12 122232541 122232750 -21553705 + AluJb SINE Alu 86 296 -16 635 185 7 0 chr12 122232826 122232961 -21553494 + Charlie4 DNA MER1_type 1811 1946 -15 280 263 168 0 chr12 122233034 122233129 -21553326 + L2 LINE L2 3199 3309 -4 1848 149 42 0 chr12 122233284 122233302 -21553153 - AluSx SINE Alu -12 300 284 543 16 0 0 chr12 122233302 122233366 -21553089 + (TG)n Simple_repeat Simple_repeat 1 64 0 1848 149 42 0 chr12 122233366 122233635 -21552820 - AluSx SINE Alu -28 284 1 214 159 0 23 chr12 122233764 122233808 -21552647 - MER5B DNA MER1_type -16 162 120 1917 151 0 45 chr12 122233816 122234200 -21552255 + AluJb SINE Alu 16 385 0 366 336 18 0 chr12 122234208 122234318 -21552137 - MER5B DNA MER1_type -66 112 1 367 272 30 71 chr12 122234983 122235152 -21551303 - MIR SINE MIR -81 181 20 223 191 0 0 chr12 122235847 122235894 -21550561 + MIR SINE MIR 88 134 -128 1816 171 7 0 chr12 122235915 122236213 -21550242 - AluJo SINE Alu -8 304 5 23 0 0 0 chr12 122236221 122236244 -21550211 + AT_rich Low_complexity Low_complexity 1 23 0 716 115 0 9 chr12 122236245 122236358 -21550097 - HY1 scRNA scRNA 0 112 1 625 191 57 2 chr12 122237054 122237266 -21549189 - MER58B DNA MER1_type 0 341 83 717 161 0 0 chr12 122237267 122237385 -21549070 + FLAM_C SINE Alu 1 118 -15 296 274 36 0 chr12 122237416 122237500 -21548955 - MER58B DNA MER1_type -248 93 7 199 295 32 68 chr12 122237840 122237936 -21548519 - L2 LINE L2 -195 3077 2979 2103 142 0 7 chr12 122237936 122238238 -21548217 + AluJb SINE Alu 11 310 -2 199 295 32 68 chr12 122238238 122238264 -21548191 - L2 LINE L2 -293 2979 2954 1085 189 4 44 chr12 122238264 122238492 -21547963 + MER20 DNA MER1_type 1 219 0 199 295 32 68 chr12 122238492 122238558 -21547897 - L2 LINE L2 -318 2954 2895 2076 136 0 3 chr12 122238576 122238870 -21547585 + AluSx SINE Alu 1 293 -19 2104 129 3 19 chr12 122238872 122239009 -21547446 + AluSx SINE Alu 1 139 -173 2178 128 7 0 chr12 122239009 122239307 -21547148 + AluSg SINE Alu 1 300 -10 2104 129 3 19 chr12 122239307 122239478 -21546977 + AluSx SINE Alu 139 304 -8 2041 132 11 4 chr12 122239864 122240175 -21546280 + AluSx SINE Alu 1 313 0 1964 152 0 34 chr12 122240275 122240598 -21545857 + AluJb SINE Alu 1 312 0 401 284 32 63 chr12 122240674 122240864 -21545591 - MIR SINE MIR -50 212 29 207 250 15 44 chr12 122240923 122240991 -21545464 + L2 LINE L2 3181 3246 -67 198 0 0 0 chr12 122242208 122242230 -21544225 + (A)n Simple_repeat Simple_repeat 1 22 0 306 0 0 0 chr12 122244679 122244713 -21541742 + (A)n Simple_repeat Simple_repeat 1 34 0 478 356 36 5 chr12 122244824 122245018 -21541437 + MIR SINE MIR 28 227 -35 207 271 71 0 chr12 122246395 122246465 -21539990 + G-rich Low_complexity Low_complexity 2 76 0 189 0 0 0 chr12 122246788 122246809 -21539646 + (A)n Simple_repeat Simple_repeat 1 21 0 283 283 6 75 chr12 122250809 122250968 -21535487 + MIR SINE MIR 78 225 -37 221 0 35 0 chr12 122251136 122251165 -21535290 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 843 221 70 0 chr12 122252000 122252199 -21534256 + MIR SINE MIR 29 241 -21 507 273 56 19 chr12 122253205 122253366 -21533089 + MIR SINE MIR 47 213 -49 378 0 0 0 chr12 122253932 122253974 -21532481 + (TG)n Simple_repeat Simple_repeat 2 43 0 333 0 0 0 chr12 122256319 122256356 -21530099 + (CA)n Simple_repeat Simple_repeat 1 37 0 213 175 0 0 chr12 122257263 122257303 -21529152 + (CA)n Simple_repeat Simple_repeat 1 40 0 217 280 0 0 chr12 122261965 122262015 -21524440 + CT-rich Low_complexity Low_complexity 5 54 0 335 173 12 0 chr12 122262350 122262431 -21524024 + GA-rich Low_complexity Low_complexity 2 83 0 186 80 60 40 chr12 122262848 122262898 -21523557 + GA-rich Low_complexity Low_complexity 3 53 0 246 156 0 0 chr12 122264715 122264760 -21521695 + A-rich Low_complexity Low_complexity 2 46 0 504 122 0 0 chr12 122267110 122267192 -21519263 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 1921 129 28 18 chr12 122267207 122267493 -21518962 - AluSc SINE Alu -18 291 3 1078 73 22 7 chr12 122267493 122267629 -21518826 - AluSq/x SINE Alu -174 138 1 1589 140 0 101 chr12 122267788 122268095 -21518360 + AluSx SINE Alu 1 276 -36 923 139 0 21 chr12 122269055 122269199 -21517256 + FLAM_C SINE Alu 3 143 0 1866 150 14 7 chr12 122269353 122269639 -21516816 + AluJo SINE Alu 7 294 -18 1912 108 3 74 chr12 122271304 122271627 -21514828 - AluSx SINE Alu -12 300 1 306 327 49 37 chr12 122271632 122271794 -21514661 + L2 LINE L2 2693 2856 -458 878 123 29 29 chr12 122271868 122272006 -21514449 + FLAM_C SINE Alu 6 143 0 399 296 26 26 chr12 122272059 122272211 -21514244 + MLT1H LTR MaLR 105 256 -293 332 263 34 25 chr12 122272329 122272447 -21514008 + MLT1H LTR MaLR 431 549 0 1606 164 0 75 chr12 122272458 122272792 -21513663 - AluJo SINE Alu 0 311 1 2367 100 0 7 chr12 122272856 122273157 -21513298 - AluSg SINE Alu -11 299 1 489 286 95 44 chr12 122273193 122273487 -21512968 + L2 LINE L2 3005 3313 0 2123 150 0 0 chr12 122273543 122273843 -21512612 + AluSx SINE Alu 1 300 -12 1488 188 28 3 chr12 122273912 122274199 -21512256 + AluJb SINE Alu 14 307 -5 204 125 0 0 chr12 122274299 122274331 -21512124 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1684 146 89 0 chr12 122274346 122274627 -21511828 + AluSg SINE Alu 1 306 -4 25 0 0 0 chr12 122274639 122274664 -21511791 + AT_rich Low_complexity Low_complexity 1 25 0 227 344 74 21 chr12 122274825 122275014 -21511441 - L2 LINE L2 -213 3059 2861 1836 93 35 59 chr12 122275068 122275379 -21511076 - AluSq SINE Alu 0 304 1 773 266 23 43 chr12 122275386 122275642 -21510813 - MIR SINE MIR -10 252 2 2007 129 6 35 chr12 122275697 122276014 -21510441 - AluJb SINE Alu -4 308 1 281 354 68 0 chr12 122277096 122277243 -21509212 + MIR3 SINE MIR 20 176 -32 292 259 99 0 chr12 122277518 122277599 -21508856 + MLT1G1 LTR MaLR 17 105 -490 2245 135 0 0 chr12 122277600 122277912 -21508543 + AluSx SINE Alu 1 312 0 234 181 170 32 chr12 122278093 122278187 -21508268 + MLT1H LTR MaLR 440 546 -3 193 195 0 24 chr12 122278480 122278521 -21507934 - L2 LINE L2 -12 3260 3221 * 353 297 168 27 chr12 122278487 122278672 -21507783 - MIR SINE MIR -13 249 39 24 0 0 0 chr12 122278761 122278785 -21507670 + AT_rich Low_complexity Low_complexity 1 24 0 2109 134 7 0 chr12 122278786 122279069 -21507386 + AluSx SINE Alu 1 307 0 199 0 0 0 chr12 122279069 122279091 -21507364 + (TAA)n Simple_repeat Simple_repeat 2 180 0 423 270 133 9 chr12 122279237 122279604 -21506851 - LTR33 LTR ERVL -8 513 79 364 246 9 128 chr12 122279996 122280207 -21506248 + MIR SINE MIR 74 259 -3 2485 93 0 0 chr12 122280332 122280634 -21505821 - AluSx SINE Alu -10 302 1 180 0 0 0 chr12 122280721 122280741 -21505714 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 402 100 0 0 chr12 122280742 122280802 -21505653 + (TC)n Simple_repeat Simple_repeat 1 60 0 1870 148 4 4 chr12 122280807 122281078 -21505377 - AluSx SINE Alu -33 279 9 1796 174 10 7 chr12 122281189 122281487 -21504968 - AluJo SINE Alu -13 299 1 2089 119 3 3 chr12 122281650 122281966 -21504489 - AluSx SINE Alu 0 312 1 590 106 0 0 chr12 122282001 122282086 -21504369 - AluJ/FLAM SINE Alu -213 99 15 2021 149 3 16 chr12 122282131 122282447 -21504008 + AluJb SINE Alu 1 312 0 1543 176 31 104 chr12 122282485 122282728 -21503727 - MLT1B LTR MaLR 0 390 189 2106 137 6 13 chr12 122282728 122283041 -21503414 - AluSx SINE Alu -1 311 1 1543 176 31 104 chr12 122283041 122283218 -21503237 - MLT1B LTR MaLR -201 189 1 2154 105 0 11 chr12 122283230 122283540 -21502915 - AluSc SINE Alu 0 308 2 189 222 0 63 chr12 122283541 122283604 -21502851 - MIR SINE MIR -68 194 136 1784 192 0 0 chr12 122283607 122283946 -21502509 - AluJb SINE Alu 0 339 1 295 169 0 34 chr12 122283963 122284022 -21502433 - MER31A LTR ERV1 -76 409 353 493 234 0 9 chr12 122284022 122284129 -21502326 - MIR SINE MIR -110 152 47 198 71 0 0 chr12 122284137 122284165 -21502290 + (TATG)n Simple_repeat Simple_repeat 2 29 0 795 235 6 0 chr12 122284165 122284327 -21502128 - FRAM SINE Alu -3 163 1 490 284 112 6 chr12 122284918 122285087 -21501368 - MIR SINE MIR -20 242 56 1931 177 0 13 chr12 122285163 122285479 -21500976 - AluJb SINE Alu 0 312 1 2436 109 0 0 chr12 122285498 122285810 -21500645 - AluSx SINE Alu 0 312 1 258 260 21 106 chr12 122285810 122285950 -21500505 + L2 LINE L2 2997 3111 -202 2143 121 3 16 chr12 122285950 122286263 -21500192 - AluSx SINE Alu -3 309 1 258 260 21 106 chr12 122286263 122286357 -21500098 + L2 LINE L2 3111 3211 -102 491 141 11 0 chr12 122286415 122286507 -21499948 - L1MA4A LINE L1 -10 6293 6201 1940 177 0 3 chr12 122286543 122286853 -21499602 + AluJo SINE Alu 1 309 -3 2152 125 3 0 chr12 122286961 122287250 -21499205 + AluSx SINE Alu 1 290 -22 220 162 0 0 chr12 122288011 122288048 -21498407 - MIR SINE MIR -114 148 112 1694 252 35 11 chr12 122288062 122288515 -21497940 - MLT1G LTR MaLR 0 590 127 315 0 0 0 chr12 122288691 122288726 -21497729 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr12 122288749 122288777 -21497678 + AT_rich Low_complexity Low_complexity 1 28 0 1662 128 0 21 chr12 122288841 122288954 -21497501 + AluSx SINE Alu 24 138 -174 2265 121 0 0 chr12 122288954 122289252 -21497203 + AluSx SINE Alu 1 298 -14 1662 128 0 21 chr12 122289252 122289373 -21497082 + AluSx SINE Alu 138 253 -59 2299 121 0 13 chr12 122289470 122289828 -21496627 + AluSx SINE Alu 1 312 0 358 240 30 20 chr12 122289828 122289928 -21496527 - MIR SINE MIR -159 103 3 222 305 21 42 chr12 122290050 122290145 -21496310 - MIR SINE MIR -122 140 48 2406 84 3 0 chr12 122290171 122290468 -21495987 - AluY SINE Alu -13 298 1 369 276 66 86 chr12 122291399 122291956 -21494499 - L1MC4 LINE L1 -185 8274 1177 334 258 89 8 chr12 122291888 122292012 -21494443 + L1MCa LINE L1 1931 2064 -4362 219 69 0 0 chr12 122292017 122292046 -21494409 + (CA)n Simple_repeat Simple_repeat 2 30 0 354 260 68 40 chr12 122292093 122292303 -21494152 - MIR SINE MIR -30 232 24 191 206 111 16 chr12 122293374 122293437 -21493018 - L2 LINE L2 -14 3299 3231 529 246 28 0 chr12 122293525 122293667 -21492788 + MER5A DNA MER1_type 40 185 -4 339 25 0 0 chr12 122295441 122295481 -21490974 + (TG)n Simple_repeat Simple_repeat 2 41 0 2268 109 0 3 chr12 122295519 122295822 -21490633 + AluSx SINE Alu 1 302 -10 260 271 116 31 chr12 122295877 122296006 -21490449 - MIR SINE MIR -18 244 105 1734 176 3 23 chr12 122296188 122296305 -21490150 + AluJb SINE Alu 1 119 -193 1999 134 17 3 chr12 122296305 122296597 -21489858 - AluSx SINE Alu -16 296 1 1734 176 3 23 chr12 122296597 122296781 -21489674 + AluJb SINE Alu 119 296 -16 25 51 0 0 chr12 122296890 122296929 -21489526 + AT_rich Low_complexity Low_complexity 1 39 0 778 153 0 0 chr12 122296930 122297048 -21489407 - FLAM_C SINE Alu -15 118 1 751 254 79 14 chr12 122297048 122297282 -21489173 - MIR SINE MIR -4 258 15 2060 151 0 0 chr12 122297658 122297943 -21488512 + AluSx SINE Alu 3 287 -25 226 247 24 71 chr12 122297943 122298017 -21488438 - MIR SINE MIR -9 253 182 213 278 103 31 chr12 122298185 122298282 -21488173 - MIR3 SINE MIR -30 178 75 1878 95 32 71 chr12 122298295 122298578 -21487877 + AluSx SINE Alu 24 295 -17 2217 103 0 36 chr12 122298587 122298889 -21487566 + AluSg SINE Alu 11 301 -9 312 254 193 0 chr12 122298958 122299072 -21487383 + MIR3 SINE MIR 7 142 -66 276 185 19 0 chr12 122299684 122299738 -21486717 - MIR SINE MIR -139 123 69 2147 116 16 0 chr12 122299839 122299961 -21486494 + AluSx SINE Alu 5 124 -188 333 0 0 0 chr12 122299961 122299998 -21486457 + (CA)n Simple_repeat Simple_repeat 2 38 0 2147 116 16 0 chr12 122299998 122300178 -21486277 + AluSx SINE Alu 124 312 0 234 0 0 0 chr12 122301174 122301200 -21485255 + (CA)n Simple_repeat Simple_repeat 1 26 0 981 186 74 106 chr12 122301294 122301606 -21484849 - AluJo SINE Alu 0 302 1 927 142 0 0 chr12 122302327 122302461 -21483994 + AluJo SINE Alu 1 134 -178 669 305 69 13 chr12 122302737 122302970 -21483485 - MIR SINE MIR 0 262 17 21 0 0 0 chr12 122304112 122304133 -21482322 + AT_rich Low_complexity Low_complexity 1 21 0 2292 135 0 0 chr12 122304161 122304472 -21481983 + AluSx SINE Alu 1 311 -1 381 204 39 68 chr12 122304535 122304638 -21481817 - L2 LINE L2 0 3313 3214 237 65 0 0 chr12 122305166 122305197 -21481258 + (TG)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr12 122305356 122305379 -21481076 + (A)n Simple_repeat Simple_repeat 1 23 0 2193 115 10 10 chr12 122306455 122306767 -21479688 - AluSx SINE Alu 0 312 1 2006 159 3 0 chr12 122306767 122307067 -21479388 - AluJb SINE Alu -10 302 1 181 270 90 60 chr12 122307123 122307223 -21479232 + MIR SINE MIR 63 165 -97 642 116 0 45 chr12 122307256 122307368 -21479087 + FLAM_C SINE Alu 27 133 -10 295 194 19 0 chr12 122308040 122308143 -21478312 + GA-rich Low_complexity Low_complexity 1 105 0 1942 134 32 7 chr12 122308334 122308617 -21477838 + AluJb SINE Alu 12 301 -11 336 235 35 63 chr12 122309240 122309382 -21477073 + MIR SINE MIR 106 242 -20 237 305 137 11 chr12 122309803 122309898 -21476557 - MIR SINE MIR -60 148 42 204 179 0 0 chr12 122310712 122310751 -21475704 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 282 106 0 0 chr12 122311023 122311070 -21475385 + (CA)n Simple_repeat Simple_repeat 1 47 0 454 274 54 0 chr12 122312602 122312770 -21473685 - L1ME4a LINE L1 -11 6110 5934 186 43 0 0 chr12 122312799 122312822 -21473633 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 706 165 0 0 chr12 122312825 122312940 -21473515 - FLAM_C SINE Alu -17 116 2 1616 168 0 70 chr12 122312944 122313260 -21473195 - AluJo SINE Alu -17 295 2 22 0 0 0 chr12 122313316 122313338 -21473117 + AT_rich Low_complexity Low_complexity 1 22 0 234 131 12 149 chr12 122313378 122313571 -21472884 - AluSp/q SINE Alu -15 288 164 2499 82 0 0 chr12 122313829 122314132 -21472323 - AluY SINE Alu -8 303 1 1893 164 3 13 chr12 122314281 122314579 -21471876 + AluJb SINE Alu 1 295 -17 2386 91 0 0 chr12 122314824 122315110 -21471345 - AluSg SINE Alu -24 286 1 1047 131 0 0 chr12 122315110 122315255 -21471200 - AluSq/x SINE Alu -166 146 2 269 341 0 0 chr12 122315439 122315521 -21470934 + C-rich Low_complexity Low_complexity 1 82 0 185 250 0 0 chr12 122315664 122315720 -21470735 + T-rich Low_complexity Low_complexity 1 56 0 283 167 0 0 chr12 122315837 122315885 -21470570 + T-rich Low_complexity Low_complexity 1 48 0 301 262 0 67 chr12 122316100 122316264 -21470191 + T-rich Low_complexity Low_complexity 5 157 0 225 0 0 0 chr12 122317206 122317231 -21469224 + (TG)n Simple_repeat Simple_repeat 2 26 0 267 31 0 0 chr12 122319050 122319082 -21467373 + (CA)n Simple_repeat Simple_repeat 1 32 0 273 29 0 0 chr12 122319701 122319735 -21466720 + (CGCGG)n Simple_repeat Simple_repeat 4 37 0 219 88 0 0 chr12 122322529 122322563 -21463892 + (TG)n Simple_repeat Simple_repeat 2 35 0 209 250 0 0 chr12 122322935 122322983 -21463472 - L2 LINE L2 -8 3305 3258 181 269 45 30 chr12 122323133 122323200 -21463255 + L2 LINE L2 3246 3313 0 325 302 28 0 chr12 122323428 122323534 -21462921 - L2 LINE L2 -6 3307 3199 222 122 0 61 chr12 122323567 122323616 -21462839 - MIR SINE MIR -108 154 109 277 231 26 26 chr12 122324093 122324171 -21462284 + L2 LINE L2 3195 3272 0 491 285 43 43 chr12 122324876 122325083 -21461372 - MIR SINE MIR -39 223 17 267 173 0 0 chr12 122325370 122325422 -21461033 + (TG)n Simple_repeat Simple_repeat 2 53 0 206 204 0 19 chr12 122325769 122325823 -21460632 + T-rich Low_complexity Low_complexity 5 57 0 657 239 0 0 chr12 122325855 122326035 -21460420 + CT-rich Low_complexity Low_complexity 1 180 0 2303 88 0 14 chr12 122326646 122326941 -21459514 - AluSx SINE Alu -21 291 1 192 158 0 0 chr12 122327263 122327301 -21459154 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 345 342 13 7 chr12 122328378 122328533 -21457922 + MIR SINE MIR 104 259 -3 196 179 32 21 chr12 122328563 122328658 -21457797 + (TA)n Simple_repeat Simple_repeat 1 96 0 297 0 0 0 chr12 122328685 122328718 -21457737 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 346 6 26 chr12 122329450 122329606 -21456849 + GA-rich Low_complexity Low_complexity 2 154 0 223 322 23 23 chr12 122329679 122329850 -21456605 + GA-rich Low_complexity Low_complexity 2 172 0 * 242 393 8 0 chr12 122329789 122329911 -21456544 + G-rich Low_complexity Low_complexity 3 125 0 273 119 0 0 chr12 122330736 122330778 -21455677 + (T)n Simple_repeat Simple_repeat 1 42 0 237 65 0 0 chr12 122330842 122330873 -21455582 + (A)n Simple_repeat Simple_repeat 1 31 0 360 43 0 0 chr12 122330903 122330949 -21455506 + (TG)n Simple_repeat Simple_repeat 2 47 0 2014 131 0 3 chr12 122331936 122332242 -21454213 - AluSx SINE Alu -7 305 1 1149 157 23 9 chr12 122332289 122332506 -21453949 - AluJo SINE Alu -92 220 1 758 98 27 9 chr12 122332513 122332625 -21453830 - FLAM_C SINE Alu -16 127 14 1054 196 11 54 chr12 122332646 122332726 -21453729 - Charlie4 DNA MER1_type -1696 265 183 2169 131 0 0 chr12 122332726 122333031 -21453424 - AluSx SINE Alu -7 305 1 1054 196 11 54 chr12 122333031 122333210 -21453245 - Charlie4 DNA MER1_type -1778 183 17 231 88 0 0 chr12 122334118 122334152 -21452303 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 558 260 91 64 chr12 122334154 122334234 -21452221 - L2 LINE L2 -14 3299 3223 1733 143 3 7 chr12 122334234 122334564 -21451891 + AluJb SINE Alu 1 329 0 558 260 91 64 chr12 122334564 122334778 -21451677 - L2 LINE L2 -90 3223 2996 1910 123 3 7 chr12 122334882 122335182 -21451273 - AluSx SINE Alu -13 299 1 372 265 9 54 chr12 122335190 122335339 -21451116 - MIR SINE MIR -76 132 18 360 64 0 0 chr12 122335384 122335431 -21451024 + (A)n Simple_repeat Simple_repeat 1 47 0 209 196 22 0 chr12 122335493 122335539 -21450916 - MIR SINE MIR -80 128 82 241 292 20 9 chr12 122335582 122335672 -21450783 + MIR SINE MIR 60 147 -61 1833 130 7 3 chr12 122336059 122336351 -21450104 - AluSx SINE Alu -19 293 1 268 343 102 17 chr12 122336370 122336606 -21449849 - MIR SINE MIR -3 259 4 1068 296 59 24 chr12 122336632 122337041 -21449414 + MLT1K LTR MaLR 2 424 -164 201 154 26 0 chr12 122337169 122337208 -21449247 + L2 LINE L2 3215 3254 -18 1918 127 0 7 chr12 122337209 122337493 -21448962 + AluSx SINE Alu 1 282 -30 348 241 172 0 chr12 122337550 122337666 -21448789 + MIR3 SINE MIR 48 183 -25 430 266 25 67 chr12 122337730 122337942 -21448513 - L1MC5 LINE L1 -83 7878 7678 1654 148 0 24 chr12 122337942 122338261 -21448194 - AluSx SINE Alu 0 312 1 430 266 25 67 chr12 122338261 122338329 -21448126 - L1MC5 LINE L1 -283 7678 7609 234 0 0 0 chr12 122338330 122338356 -21448099 + (TA)n Simple_repeat Simple_repeat 1 26 0 1462 104 0 0 chr12 122338491 122338684 -21447771 - AluSx SINE Alu -117 195 3 802 110 0 8 chr12 122338753 122338871 -21447584 + FLAM_C SINE Alu 2 118 -25 23 78 0 0 chr12 122338882 122338933 -21447522 + AT_rich Low_complexity Low_complexity 1 51 0 843 128 0 0 chr12 122339886 122340003 -21446452 + FLAM_C SINE Alu 1 117 -16 29 0 0 0 chr12 122340018 122340047 -21446408 + AT_rich Low_complexity Low_complexity 1 29 0 288 309 25 0 chr12 122340226 122340307 -21446148 + MIR SINE MIR 67 149 -113 2959 104 9 20 chr12 122340365 122340815 -21445640 + MER65A LTR ERV1 1 445 0 251 233 0 70 chr12 122340861 122340947 -21445508 - L2 LINE L2 -369 2945 2866 1412 154 4 40 chr12 122341210 122341483 -21444972 - AluJo SINE Alu -9 303 41 448 264 122 30 chr12 122341733 122341930 -21444525 + MIR SINE MIR 48 262 0 1052 246 146 39 chr12 122341966 122342096 -21444359 - L2 LINE L2 -4 3309 3194 2108 132 0 0 chr12 122342096 122342407 -21444048 + AluSx SINE Alu 1 311 -1 1052 246 146 39 chr12 122342407 122342449 -21444006 - L2 LINE L2 -119 3194 3158 2099 111 3 13 chr12 122342449 122342764 -21443691 + AluSx SINE Alu 1 312 0 1052 246 146 39 chr12 122342764 122343000 -21443455 - L2 LINE L2 -155 3158 2856 1493 169 72 18 chr12 122343002 122343281 -21443174 + AluJb SINE Alu 4 297 -15 223 229 42 83 chr12 122343329 122343425 -21443030 - L2 LINE L2 -463 2851 2760 303 266 152 51 chr12 122343477 122343588 -21442867 - L1MC4 LINE L1 -1 8041 7906 2032 100 7 10 chr12 122343588 122343907 -21442548 - AluSq SINE Alu 0 318 1 303 266 152 51 chr12 122343907 122343951 -21442504 - L1MC4 LINE L1 -136 7906 7868 1038 262 111 18 chr12 122344097 122344486 -21441969 - L1ME2 LINE L1 -19 6145 5721 391 204 11 0 chr12 122344495 122344583 -21441872 - L1MA6 LINE L1 -1 6299 6211 185 290 29 14 chr12 122344591 122344660 -21441795 - L2 LINE L2 -603 2711 2642 1450 174 62 22 chr12 122344660 122344935 -21441520 + AluJo SINE Alu 1 286 -16 180 0 0 0 chr12 122344935 122344955 -21441500 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 826 214 29 29 chr12 122345478 122345684 -21440771 - AluJo SINE Alu -106 206 1 203 196 22 22 chr12 122345700 122345746 -21440709 + L2 LINE L2 2665 2710 -604 407 180 0 0 chr12 122345753 122345814 -21440641 - FRAM SINE Alu -37 129 69 239 234 31 47 chr12 122345816 122345880 -21440575 - MIR SINE MIR -196 66 4 1756 134 0 56 chr12 122346010 122346145 -21440310 + AluSx SINE Alu 1 142 -194 2303 65 14 0 chr12 122346145 122346436 -21440019 + AluSp SINE Alu 1 295 -18 1756 134 0 56 chr12 122346436 122346653 -21439802 + AluSx SINE Alu 142 336 0 237 100 100 80 chr12 122346701 122346730 -21439725 - MER81 DNA DNA 0 114 82 1617 180 16 13 chr12 122346730 122347041 -21439414 - AluJb SINE Alu 0 312 1 237 100 100 80 chr12 122347041 122347061 -21439394 - MER81 DNA DNA -32 82 64 1510 98 10 0 chr12 122447463 122447666 -21338789 + AluSg/x SINE Alu 97 301 -11 582 243 23 29 chr12 122448135 122448308 -21338147 + MIR SINE MIR 28 199 -63 230 287 184 44 chr12 122449614 122449750 -21336705 + MIR SINE MIR 5 159 -103 2235 241 62 12 chr12 122449755 122450269 -21336186 - MLT1F LTR MaLR -2 540 1 265 252 143 25 chr12 122450283 122450402 -21336053 - MER5A DNA MER1_type -14 175 43 * 422 254 127 8 chr12 122450299 122450433 -21336022 + MER5A DNA MER1_type 40 189 0 238 211 118 13 chr12 122450822 122450898 -21335557 - MLT1K LTR MaLR -329 259 176 3080 156 77 46 chr12 122451219 122451259 -21335196 - L1MB2 LINE L1 0 6183 6146 276 30 0 0 chr12 122451259 122451292 -21335163 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1885 139 11 0 chr12 122451292 122451573 -21334882 - AluJb SINE Alu -28 284 1 3080 156 77 46 chr12 122451573 122451790 -21334665 - L1MB2 LINE L1 -37 6146 5937 353 132 103 0 chr12 122451790 122451858 -21334597 - MADE1 DNA Mariner 0 80 6 3080 156 77 46 chr12 122451858 122452116 -21334339 - L1MB2 LINE L1 -246 5937 5688 2284 93 3 0 chr12 122452116 122452417 -21334038 + AluSx SINE Alu 2 303 -9 3080 156 77 46 chr12 122452417 122452723 -21333732 - L1MB2 LINE L1 -495 5688 5393 1974 128 7 0 chr12 122452723 122453020 -21333435 - AluSx SINE Alu -11 301 3 2048 113 0 0 chr12 122453024 122453331 -21333124 - AluSx SINE Alu 0 307 1 3080 156 77 46 chr12 122453331 122453431 -21333024 - L1MB2 LINE L1 -792 5391 5221 1930 87 105 0 chr12 122453567 122453844 -21332611 - AluSp SINE Alu -7 306 1 325 288 39 51 chr12 122454165 122454290 -21332165 - MLT1L LTR MaLR -184 431 306 2194 103 0 3 chr12 122454290 122454591 -21331864 - AluSg SINE Alu -10 300 1 325 288 39 51 chr12 122454591 122454697 -21331758 - MLT1L LTR MaLR -309 306 122 371 323 39 7 chr12 122455402 122455557 -21330898 - MER117 DNA MER1_type 0 197 38 367 226 32 4 chr12 122455742 122455849 -21330606 + MIR SINE MIR 39 145 -63 361 197 8 8 chr12 122458227 122458344 -21328111 + (CTGGGG)n Simple_repeat Simple_repeat 2 118 0 384 305 47 0 chr12 122458851 122458979 -21327476 - MIR3 SINE MIR -31 177 44 461 306 87 6 chr12 122459039 122459222 -21327233 - MIR SINE MIR -19 243 46 586 259 14 83 chr12 122459382 122459473 -21326982 - L2 LINE L2 -5 3308 3212 1553 93 5 5 chr12 122459473 122459689 -21326766 + AluSq SINE Alu 85 300 -13 586 259 14 83 chr12 122459689 122459813 -21326642 - L2 LINE L2 -101 3212 3108 1945 113 27 7 chr12 122459813 122460105 -21326350 + AluSx SINE Alu 1 298 -14 1055 135 6 0 chr12 122460105 122460268 -21326187 + AluSg/x SINE Alu 133 296 -14 218 288 34 0 chr12 122460768 122460827 -21325628 - L2 LINE L2 -212 3060 3000 2950 89 5 0 chr12 122460830 122461221 -21325234 + L1PA8A LINE L1 5734 6126 -5 571 291 28 0 chr12 122461499 122461681 -21324774 + MIR SINE MIR 48 234 -28 373 279 32 119 chr12 122461772 122462116 -21324339 + L2 LINE L2 2474 2787 -527 245 180 33 14 chr12 122462116 122462365 -21324090 + AluJo SINE Alu 1 300 -1 653 285 92 0 chr12 122462370 122462619 -21323836 + L2 LINE L2 2816 3087 -226 240 300 80 10 chr12 122462749 122462849 -21323606 - MIR SINE MIR -77 185 79 339 229 3 0 chr12 122463250 122463336 -21323119 + MIR SINE MIR 59 142 -66 186 336 146 9 chr12 122463434 122463544 -21322911 + MIR SINE MIR 119 243 -19 193 273 152 0 chr12 122463557 122463623 -21322832 - MIR SINE MIR -92 116 41 21 0 0 0 chr12 122464467 122464488 -21321967 + GC_rich Low_complexity Low_complexity 1 21 0 561 191 0 9 chr12 122464745 122464850 -21321605 + AluJo SINE Alu 44 147 -165 488 243 28 27 chr12 122465001 122465154 -21321301 + MIR3 SINE MIR 10 161 -62 236 258 11 65 chr12 122465334 122465427 -21321028 - L2 LINE L2 -5 3267 3180 1149 153 40 27 chr12 122465498 122465720 -21320735 - AluJo SINE Alu -3 309 85 1302 221 82 32 chr12 122465729 122465947 -21320508 - L2 LINE L2 -244 3069 2863 2186 101 0 49 chr12 122465947 122466275 -21320180 + AluSx SINE Alu 1 312 0 1302 221 82 32 chr12 122466275 122466578 -21319877 - L2 LINE L2 -450 2863 2527 2798 85 3 0 chr12 122466586 122466940 -21319515 - THE1A LTR MaLR 0 355 1 8246 113 25 2 chr12 122466940 122468068 -21318387 - THE1A-int LTR MaLR 0 1580 391 2158 116 6 3 chr12 122468068 122468379 -21318076 - AluSx SINE Alu 0 312 1 8246 113 25 2 chr12 122468379 122468778 -21317677 - THE1A-int LTR MaLR -1189 391 3 348 183 0 0 chr12 122468780 122468840 -21317615 - THE1A LTR MaLR 0 355 296 1671 88 17 17 chr12 122468841 122469080 -21317375 - AluSg SINE Alu -7 305 67 1717 39 5 0 chr12 122469080 122469285 -21317170 - L1PA5 LINE L1 -2 6152 5947 609 64 0 0 chr12 122469285 122469363 -21317092 - AluSg SINE Alu -231 79 2 2277 80 3 0 chr12 122469364 122469666 -21316789 - THE1A LTR MaLR -52 303 1 204 216 0 0 chr12 122469718 122469755 -21316700 + GA-rich Low_complexity Low_complexity 1 37 0 2247 103 0 10 chr12 122469772 122470084 -21316371 + AluSg1 SINE Alu 1 309 0 917 219 0 30 chr12 122470093 122470294 -21316161 + AluJo SINE Alu 1 195 -117 25 0 0 0 chr12 122470308 122470333 -21316122 + AT_rich Low_complexity Low_complexity 1 25 0 674 228 38 61 chr12 122470374 122470555 -21315900 + L1M4 LINE L1 4879 5063 -1083 1610 155 30 24 chr12 122470555 122470852 -21315603 + AluJo SINE Alu 2 300 -12 2087 118 3 16 chr12 122470852 122470987 -21315468 + AluSg SINE Alu 1 136 -174 2296 88 3 3 chr12 122470987 122471294 -21315161 + AluSx SINE Alu 1 307 -5 2087 118 3 16 chr12 122471294 122471471 -21314984 + AluSg SINE Alu 136 309 -1 674 228 38 61 chr12 122471471 122471551 -21314904 + L1M4 LINE L1 5061 5135 -1011 1956 136 27 0 chr12 122471571 122471866 -21314589 - AluSx SINE Alu -9 303 1 264 100 0 0 chr12 122471916 122471956 -21314499 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 184 73 0 73 chr12 122471949 122471990 -21314465 + (GGAAA)n Simple_repeat Simple_repeat 5 42 0 * 451 212 30 48 chr12 122471990 122472155 -21314300 + L1M4 LINE L1 5176 5337 -809 762 173 23 40 chr12 122472167 122472340 -21314115 - AluSp SINE Alu -27 286 117 639 0 0 0 chr12 122472530 122472601 -21313854 + (TA)n Simple_repeat Simple_repeat 2 72 0 193 361 55 33 chr12 122472791 122472974 -21313481 - L2 LINE L2 -232 3040 2854 185 277 0 0 chr12 122473028 122473075 -21313380 - L2 LINE L2 -556 2758 2712 390 278 0 0 chr12 122473167 122473257 -21313198 + MER91B DNA MER1_type 68 157 -33 200 314 42 85 chr12 122473456 122473574 -21312881 - MIR SINE MIR -66 196 84 1974 126 3 16 chr12 122473646 122473955 -21312500 + AluSx SINE Alu 1 305 -7 2203 95 3 3 chr12 122473978 122474282 -21312173 - AluSx SINE Alu -8 304 1 302 262 30 11 chr12 122474465 122474738 -21311717 - L1MC4 LINE L1 0 8042 7692 1935 120 0 45 chr12 122474775 122475083 -21311372 + AluSx SINE Alu 1 294 -18 914 179 0 0 chr12 122475086 122475237 -21311218 + AluJo/FRAM SINE Alu 136 286 -26 1035 229 96 7 chr12 122475278 122475579 -21310876 - L1MC4 LINE L1 -371 7671 7344 858 77 17 0 chr12 122475579 122475696 -21310759 + AluSg/x SINE Alu 154 272 -40 821 144 10 93 chr12 122475701 122475755 -21310700 - L1MC4 LINE L1 -696 7346 7289 2336 71 0 7 chr12 122475755 122476052 -21310403 + AluSc SINE Alu 1 295 -14 821 144 10 93 chr12 122476052 122476191 -21310264 - L1MC4 LINE L1 -753 7289 7169 1501 157 3 86 chr12 122476640 122476953 -21309502 + AluJo SINE Alu 5 291 -21 2186 99 0 7 chr12 122476958 122477252 -21309203 + AluSx SINE Alu 1 292 -20 2078 117 13 0 chr12 122477278 122477578 -21308877 + AluSx SINE Alu 1 304 -8 852 146 43 30 chr12 122477626 122477790 -21308665 + FRAM SINE Alu 11 176 0 309 290 42 78 chr12 122478153 122478274 -21308181 - L1ME4a LINE L1 -5 6116 5992 315 0 0 0 chr12 122478274 122478309 -21308146 + (TG)n Simple_repeat Simple_repeat 2 36 0 1836 118 10 24 chr12 122478309 122478597 -21307858 - AluSx SINE Alu -28 284 1 309 290 42 78 chr12 122478597 122478667 -21307788 - L1ME4a LINE L1 -127 5994 5931 1828 170 0 0 chr12 122478742 122479053 -21307402 + AluJo SINE Alu 1 311 -1 1131 165 0 0 chr12 122479053 122479229 -21307226 + AluSg/x SINE Alu 132 307 -3 296 305 105 5 chr12 122479252 122479528 -21306927 - L1P5 LINE L1 -295 5856 5547 2161 113 7 0 chr12 122479603 122479904 -21306551 + AluSx SINE Alu 1 303 -9 332 210 62 24 chr12 122480507 122480605 -21305850 + AluYa8 SINE Alu 132 223 -77 237 91 0 0 chr12 122480598 122480631 -21305824 + Alu SINE Alu 172 204 -98 * 635 156 115 49 chr12 122480635 122480757 -21305698 + FAM SINE Alu 36 165 -20 2161 121 10 0 chr12 122480801 122481108 -21305347 + AluSx SINE Alu 2 311 -1 474 153 153 0 chr12 122481376 122481461 -21304994 + 5S rRNA rRNA 1 98 -23 2052 112 0 11 chr12 122481771 122482056 -21304399 + AluSx SINE Alu 9 290 -22 745 163 0 54 chr12 122482277 122482395 -21304060 + FLAM_C SINE Alu 2 123 -189 4819 53 12 3 chr12 122482395 122482981 -21303474 + LTR10C LTR ERV1 1 591 0 1359 185 0 97 chr12 122482998 122483327 -21303128 + AluJo SINE Alu 3 299 -13 1809 154 14 10 chr12 122484047 122484340 -21302115 + AluJo SINE Alu 3 296 -16 506 292 64 50 chr12 122484366 122484526 -21301929 + MIR SINE MIR 57 222 -40 2088 132 7 0 chr12 122484526 122484830 -21301625 + AluSx SINE Alu 1 306 -6 506 292 64 50 chr12 122484830 122484871 -21301584 + MIR SINE MIR 222 261 -1 184 182 0 0 chr12 122485526 122485559 -21300896 - MIR SINE MIR -61 147 115 2022 120 27 0 chr12 122485628 122485927 -21300528 + AluSx SINE Alu 1 307 -5 230 367 138 0 chr12 122486122 122486318 -21300137 - L2 LINE L2 -91 3181 2959 241 218 287 10 chr12 122486361 122486462 -21299993 - L2 LINE L2 0 3313 3185 182 250 16 47 chr12 122486520 122486584 -21299871 + L3 LINE CR1 1510 1571 -6 287 54 0 0 chr12 122486742 122486779 -21299676 + MADE1 DNA Mariner 1 37 -43 902 108 31 0 chr12 122486789 122486918 -21299537 - AluSq/x SINE Alu -180 133 1 2218 75 17 10 chr12 122487017 122487311 -21299144 + AluSc SINE Alu 1 296 -13 2302 58 22 26 chr12 122487311 122487623 -21298832 + AluY SINE Alu 1 311 0 240 88 0 0 chr12 122487625 122487659 -21298796 + MADE1 DNA Mariner 47 80 0 2120 99 19 25 chr12 122487677 122487991 -21298464 + AluSx SINE Alu 1 312 0 240 88 0 0 chr12 122487991 122488025 -21298430 - MADE1 DNA Mariner -46 34 1 2239 108 0 0 chr12 122488043 122488350 -21298105 + AluSx SINE Alu 1 307 -5 190 259 0 74 chr12 122488358 122488412 -21298043 + L2 LINE L2 3210 3259 -13 2041 128 3 0 chr12 122488582 122488878 -21297577 + AluSx SINE Alu 3 299 -13 798 199 35 0 chr12 122488907 122489077 -21297378 - MER33 DNA MER1_type -259 65 1 731 195 40 6 chr12 122489083 122489267 -21297188 + MIR SINE MIR 34 226 -36 21 0 0 0 chr12 122490474 122490495 -21295960 + AT_rich Low_complexity Low_complexity 1 21 0 858 188 34 0 chr12 122492512 122492661 -21293794 + FRAM SINE Alu 5 158 -8 897 134 0 8 chr12 122492691 122492825 -21293630 + FLAM_C SINE Alu 1 133 0 505 239 172 24 chr12 122492827 122493036 -21293419 + MER102b DNA MER1_type 96 335 -6 365 261 101 0 chr12 122493271 122493390 -21293065 + MIR SINE MIR 117 247 -15 840 132 0 90 chr12 122493392 122493559 -21292896 + AluSg/x SINE Alu 121 272 -38 1561 44 5 15 chr12 122493559 122493764 -21292691 - AluY SINE Alu -6 305 103 1777 74 0 9 chr12 122493891 122494121 -21292334 + AluY SINE Alu 66 293 -18 2114 172 27 46 chr12 122494131 122494378 -21292077 + L1MB5 LINE L1 5356 5606 -560 2224 94 0 3 chr12 122494378 122494676 -21291779 + AluSx SINE Alu 2 298 -14 2085 116 30 0 chr12 122494676 122494979 -21291476 + AluSx SINE Alu 1 312 0 2114 172 27 46 chr12 122494979 122495207 -21291248 + L1MB5 LINE L1 5604 5823 -343 743 194 57 70 chr12 122495209 122495235 -21291220 + L1MB5 LINE L1 5915 5940 -234 2178 112 0 0 chr12 122495235 122495538 -21290917 + AluSx SINE Alu 1 303 -9 743 194 57 70 chr12 122495538 122495738 -21290717 + L1MB5 LINE L1 5940 6138 -36 399 21 0 0 chr12 122495753 122495801 -21290654 + (TG)n Simple_repeat Simple_repeat 2 49 0 301 137 0 0 chr12 122495821 122495872 -21290583 + L1MB3 LINE L1 6133 6183 0 1846 158 3 3 chr12 122495879 122496176 -21290279 + AluJo SINE Alu 1 297 -15 2358 90 3 0 chr12 122496176 122496486 -21289969 + AluSp SINE Alu 1 311 -2 184 147 0 0 chr12 122496546 122496580 -21289875 - L2 LINE L2 -703 2611 2578 566 273 181 12 chr12 122496776 122497025 -21289430 + L2 LINE L2 3022 3312 -1 282 306 148 0 chr12 122497028 122497136 -21289319 + L2 LINE L2 3185 3308 -5 291 28 0 0 chr12 122497549 122497585 -21288870 + (CA)n Simple_repeat Simple_repeat 2 37 0 324 48 0 0 chr12 122497640 122497682 -21288773 + (CA)n Simple_repeat Simple_repeat 2 43 0 417 275 55 3 chr12 122497715 122497938 -21288517 + MLT1K LTR MaLR 163 462 -126 301 175 0 0 chr12 122498215 122498278 -21288177 - L1MB5 LINE L1 0 6174 6112 795 163 0 8 chr12 122498279 122498402 -21288053 + FLAM_C SINE Alu 2 123 -20 2159 113 0 0 chr12 122498841 122499134 -21287321 + AluJb SINE Alu 1 293 -19 1639 176 3 7 chr12 122499413 122499708 -21286747 - AluJo SINE Alu -1 311 18 1857 135 3 43 chr12 122499877 122500021 -21286434 + AluSq SINE Alu 1 128 -185 2285 85 0 7 chr12 122500021 122500328 -21286127 + AluSc SINE Alu 1 305 -4 1857 135 3 43 chr12 122500328 122500487 -21285968 + AluSq SINE Alu 128 292 -21 1272 111 0 0 chr12 122500497 122500677 -21285778 + AluSg/x SINE Alu 126 305 -5 975 173 0 0 chr12 122500982 122501144 -21285311 + AluJb SINE Alu 137 298 -14 1659 170 16 16 chr12 122501563 122501874 -21284581 + AluJb SINE Alu 1 311 -1 429 189 19 9 chr12 122502292 122502398 -21284057 + L1MB5 LINE L1 5804 5910 -264 2292 90 0 0 chr12 122502437 122502736 -21283719 + AluY SINE Alu 1 299 -12 2086 117 0 0 chr12 122502848 122503160 -21283295 + AluSx SINE Alu 1 312 0 888 163 0 19 chr12 122503318 122503478 -21282977 + FRAM SINE Alu 10 166 -10 405 189 0 0 chr12 122503478 122503552 -21282903 - L1MB5 LINE L1 -50 6124 6051 1701 146 22 47 chr12 122503591 122503874 -21282581 - L1MB5 LINE L1 -111 6063 5789 1866 136 3 36 chr12 122503874 122504182 -21282273 - AluJb SINE Alu -14 298 1 1701 146 22 47 chr12 122504182 122504260 -21282195 - L1MB5 LINE L1 -385 5789 5711 858 307 64 35 chr12 122504370 122504932 -21281523 + L2 LINE L2 2507 3079 -193 244 271 14 14 chr12 122504948 122505018 -21281437 - L2 LINE L2 -3 3269 3200 1817 146 11 3 chr12 122505023 122505310 -21281145 + AluSx SINE Alu 1 289 -23 788 128 16 24 chr12 122505390 122505539 -21280916 + AluJb SINE Alu 159 306 0 866 148 0 22 chr12 122505551 122505686 -21280769 + FLAM_C SINE Alu 2 133 0 676 276 11 49 chr12 122505780 122506044 -21280411 - L2 LINE L2 -140 3173 2920 325 244 114 8 chr12 122506060 122506191 -21280264 - L2 LINE L2 -1135 2179 2035 393 220 37 18 chr12 122506249 122506358 -21280097 + L2 LINE L2 3141 3251 -21 1177 129 0 16 chr12 122506835 122507021 -21279434 - AluSc SINE Alu -5 304 122 839 114 193 0 chr12 122507333 122507473 -21278982 - AluSp SINE Alu -7 306 140 1217 100 12 6 chr12 122507765 122507930 -21278525 + FAM SINE Alu 1 167 -4 2421 51 0 0 chr12 122507930 122508224 -21278231 - AluY SINE Alu -17 294 1 544 204 0 0 chr12 122508300 122508403 -21278052 + MIR SINE MIR 49 151 -111 2096 118 10 0 chr12 122508403 122508708 -21277747 + AluSx SINE Alu 1 308 -4 397 284 57 28 chr12 122508737 122508878 -21277577 - MIR SINE MIR -74 188 44 * 524 260 110 0 chr12 122508830 122508976 -21277479 + MIR SINE MIR 33 194 -68 437 225 11 0 chr12 122509064 122509153 -21277302 + L2 LINE L2 3205 3294 -19 709 255 32 11 chr12 122509380 122509568 -21276887 - MLT1K LTR MaLR -26 562 371 1881 87 8 8 chr12 122509599 122509853 -21276602 - AluSx SINE Alu -58 254 1 404 158 20 30 chr12 122510220 122510321 -21276134 - MIR SINE MIR -147 115 16 294 95 0 0 chr12 122510577 122510619 -21275836 + (TA)n Simple_repeat Simple_repeat 2 43 0 288 0 0 0 chr12 122510622 122510654 -21275801 + (GA)n Simple_repeat Simple_repeat 1 32 0 762 147 0 0 chr12 122510656 122510765 -21275690 - AluJb SINE Alu -201 111 3 2562 182 13 45 chr12 122511226 122511295 -21275160 - L1MB5 LINE L1 -3 6171 6101 1422 177 49 14 chr12 122511295 122511459 -21274996 - AluJo SINE Alu -14 298 118 311 0 26 0 chr12 122511459 122511498 -21274957 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1422 177 49 14 chr12 122511498 122511621 -21274834 - AluJo SINE Alu -194 118 1 2562 182 13 45 chr12 122511621 122512101 -21274354 - L1MB5 LINE L1 -73 6101 5640 832 154 0 8 chr12 122512110 122512240 -21274215 - FLAM_C SINE Alu -3 130 2 2216 108 0 0 chr12 122512260 122512556 -21273899 - AluSx SINE Alu -16 296 1 1836 127 14 0 chr12 122512673 122512974 -21273481 - AluSx SINE Alu 0 309 5 403 183 2 0 chr12 122512992 122513080 -21273375 - MIR SINE MIR -63 145 62 638 231 82 24 chr12 122513653 122513861 -21272594 + MIR SINE MIR 15 234 -28 2034 113 0 31 chr12 122513899 122514217 -21272238 + AluSx SINE Alu 1 308 -4 2201 100 0 0 chr12 122514240 122514531 -21271924 + AluSg SINE Alu 1 291 -19 385 315 28 14 chr12 122514599 122514742 -21271713 + MIR SINE MIR 13 157 -105 1828 215 41 60 chr12 122515169 122515327 -21271128 - MLT1F1 LTR MaLR 0 567 408 915 213 6 23 chr12 122515327 122515501 -21270954 + FAM SINE Alu 4 174 -1 1828 215 41 60 chr12 122515501 122515825 -21270630 - MLT1F1 LTR MaLR -159 408 94 486 85 0 1 chr12 122515825 122516072 -21270383 + AluY SINE Alu 1 280 -32 646 43 0 22 chr12 122516073 122516165 -21270290 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 555 147 21 0 chr12 122516165 122516260 -21270195 - MLT1F1 LTR MaLR -466 101 5 657 250 116 82 chr12 122516263 122516447 -21270008 - L2 LINE L2 -26 3287 3111 1993 130 13 3 chr12 122516447 122516747 -21269708 + AluJo SINE Alu 1 303 -9 657 250 116 82 chr12 122516747 122516852 -21269603 - L2 LINE L2 -202 3111 3011 1965 131 0 13 chr12 122516852 122517157 -21269298 + AluSx SINE Alu 1 301 -11 657 250 116 82 chr12 122517157 122517270 -21269185 - L2 LINE L2 -302 3011 2870 200 224 0 20 chr12 122517356 122517405 -21269050 - MIR SINE MIR -106 156 109 278 200 71 0 chr12 122517602 122517672 -21268783 + MIR SINE MIR 70 144 -118 2070 116 3 3 chr12 122517774 122518068 -21268387 - AluSq SINE Alu -16 297 4 491 272 72 46 chr12 122518072 122518267 -21268188 - MIR SINE MIR -4 258 59 2109 101 3 7 chr12 122518269 122518567 -21267888 - AluSg SINE Alu -13 297 1 938 137 104 0 chr12 122518571 122518753 -21267702 - L1MA3 LINE L1 0 6305 6105 2434 74 3 0 chr12 122518826 122519138 -21267317 - AluSp SINE Alu 0 313 1 181 333 17 0 chr12 122519770 122519830 -21266625 + MIR SINE MIR 81 141 -67 2092 126 0 0 chr12 122519865 122520167 -21266288 - AluSx SINE Alu -10 302 1 908 287 112 4 chr12 122520260 122520744 -21265711 + L2 LINE L2 2727 3271 -42 456 264 62 21 chr12 122520918 122521062 -21265393 - MIR SINE MIR -20 242 93 21 82 0 0 chr12 122522026 122522075 -21264380 + GC_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr12 122522204 122522230 -21264225 + GC_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr12 122522357 122522387 -21264068 + GC_rich Low_complexity Low_complexity 1 30 0 243 212 274 18 chr12 122524072 122524185 -21262270 + MIR SINE MIR 92 233 -29 416 235 101 8 chr12 122524355 122524474 -21261981 + MIR SINE MIR 71 200 -62 251 343 45 15 chr12 122525204 122525338 -21261117 + MIR SINE MIR 49 186 -76 409 298 143 6 chr12 122525375 122525536 -21260919 + MIR SINE MIR 77 259 -3 1560 176 55 3 chr12 122527262 122527552 -21258903 + AluJb SINE Alu 1 305 -7 197 240 173 39 chr12 122528295 122528399 -21258056 + L2 LINE L2 3176 3293 -20 * 221 67 0 0 chr12 122528371 122528401 -21258054 + MIR SINE MIR 221 250 -12 1805 157 3 7 chr12 122528750 122529049 -21257406 - AluJb SINE Alu -14 298 1 450 256 16 16 chr12 122529308 122529429 -21257026 + MIR SINE MIR 108 228 -34 1098 119 0 0 chr12 122529436 122529596 -21256859 + FRAM SINE Alu 5 164 -12 269 225 315 0 chr12 122529902 122530013 -21256442 - L2 LINE L2 -1 3312 3167 1983 139 7 0 chr12 122530488 122530783 -21255672 + AluJb SINE Alu 1 297 -15 212 315 36 27 chr12 122531140 122531251 -21255204 + L2 LINE L2 3140 3251 -21 184 147 0 0 chr12 122531729 122531763 -21254692 + L2 LINE L2 2578 2611 -703 2243 103 3 0 chr12 122531823 122532133 -21254322 - AluSq SINE Alu -2 311 1 507 305 17 15 chr12 122532756 122532981 -21253474 + MIR SINE MIR 21 246 -16 2263 65 7 33 chr12 122532997 122533303 -21253152 - AluY SINE Alu -13 298 1 2363 87 3 0 chr12 122533507 122533818 -21252637 + AluSx SINE Alu 1 312 0 2045 129 3 10 chr12 122533928 122534238 -21252217 - AluSg SINE Alu -2 308 1 1360 164 87 35 chr12 122534244 122534531 -21251924 - AluJo SINE Alu -10 302 1 1465 157 111 4 chr12 122534534 122534796 -21251659 - AluJo SINE Alu -22 290 1 246 272 12 12 chr12 122535317 122535398 -21251057 + MER117 DNA MER1_type 56 136 -61 1953 124 13 26 chr12 122535961 122536268 -21250187 - AluSx SINE Alu -7 305 3 183 42 0 0 chr12 122536268 122536292 -21250163 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 180 279 78 31 chr12 122536353 122536482 -21249973 + L2 LINE L2 2965 3099 -173 1119 174 58 18 chr12 122536594 122536818 -21249637 - AluJo SINE Alu -3 309 77 2024 130 0 10 chr12 122536820 122537119 -21249336 - AluSc SINE Alu -13 296 1 990 95 0 7 chr12 122537119 122537256 -21249199 - AluJb SINE Alu -176 136 1 337 296 23 37 chr12 122538355 122538534 -21247921 + L1ME4a LINE L1 5695 5871 -250 1763 150 25 0 chr12 122538555 122538849 -21247606 - AluSx SINE Alu 0 301 1 23 33 0 0 chr12 122538946 122538976 -21247479 + AT_rich Low_complexity Low_complexity 1 30 0 1463 196 115 0 chr12 122539004 122539274 -21247181 - AluJb SINE Alu -1 301 1 259 195 50 119 chr12 122539298 122539341 -21247114 + L1ME LINE L1 5739 5783 -387 1467 188 65 4 chr12 122539341 122539618 -21246837 + AluJo SINE Alu 1 294 -18 259 195 50 119 chr12 122539618 122539691 -21246764 + L1ME LINE L1 5783 5844 -326 1012 164 0 34 chr12 122539691 122539868 -21246587 - FAM SINE Alu -1 174 4 259 195 50 119 chr12 122539868 122539909 -21246546 + L1ME LINE L1 5844 5886 -284 1445 151 39 97 chr12 122539916 122540257 -21246198 + AluJb SINE Alu 1 312 0 2104 117 7 13 chr12 122540285 122540593 -21245862 - AluSx SINE Alu -6 306 1 304 181 56 42 chr12 122540821 122540837 -21245618 - L1MCa LINE L1 -4348 2078 2064 195 100 0 0 chr12 122540837 122540867 -21245588 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 304 181 56 42 chr12 122540867 122540922 -21245533 - L1MCa LINE L1 -4362 2064 2006 1716 202 22 34 chr12 122541192 122541557 -21244898 + L1MB5 LINE L1 5769 6137 -37 2278 92 7 7 chr12 122541557 122541860 -21244595 + AluSx SINE Alu 1 303 -9 2182 86 10 23 chr12 122541862 122542164 -21244291 + AluSp SINE Alu 2 299 -14 1716 202 22 34 chr12 122542164 122542206 -21244249 + L1MB5 LINE L1 6138 6174 0 474 285 146 62 chr12 122542248 122542435 -21244020 - L1ME4a LINE L1 -56 6065 5895 852 181 0 0 chr12 122542435 122542568 -21243887 - FLAM_A SINE Alu 0 133 1 2056 120 3 7 chr12 122542572 122542871 -21243584 - AluSx SINE Alu -14 298 1 474 285 146 62 chr12 122542871 122543082 -21243373 - L1ME4a LINE L1 -228 5893 5628 1228 170 10 0 chr12 122543437 122543637 -21242818 - AluSg/x SINE Alu -3 309 108 1903 101 8 0 chr12 122543637 122543904 -21242551 - AluSq SINE Alu -2 311 43 556 55 27 0 chr12 122543935 122544008 -21242447 + Alu SINE Alu 3 77 -232 185 320 0 0 chr12 122544089 122544139 -21242316 + L2 LINE L2 3223 3272 0 1904 97 0 8 chr12 122544644 122544911 -21241544 - AluSq SINE Alu -13 300 36 346 88 18 0 chr12 122544919 122544987 -21241468 + Alu SINE Alu 1 53 -249 2018 139 7 0 chr12 122545248 122545543 -21240912 + AluJb SINE Alu 1 297 -15 303 376 0 0 chr12 122545800 122545901 -21240554 - MIR SINE MIR -91 171 71 * 457 273 31 0 chr12 122545898 122546026 -21240429 + L2 LINE L2 3140 3271 -1 228 122 0 0 chr12 122546507 122546548 -21239907 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 2200 123 0 0 chr12 122546558 122546860 -21239595 - AluSx SINE Alu -10 302 1 300 27 0 0 chr12 122546861 122546898 -21239557 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2259 57 0 3 chr12 122546898 122547180 -21239275 - AluY SINE Alu -30 281 1 704 273 109 34 chr12 122547238 122547420 -21239035 - MIR SINE MIR 0 262 56 2313 103 0 0 chr12 122547420 122547732 -21238723 - AluSx SINE Alu 0 312 1 704 273 109 34 chr12 122547732 122547787 -21238668 - MIR SINE MIR -206 56 7 326 276 126 19 chr12 122547965 122548244 -21238211 - L1ME3 LINE L1 -233 5929 5620 1338 161 0 77 chr12 122548245 122548399 -21238056 - L1 LINE L1 -1996 4150 4027 1341 151 102 26 chr12 122548399 122548695 -21237760 - AluJb SINE Alu 0 316 1 1338 161 0 77 chr12 122548695 122548838 -21237617 - L1 LINE L1 -2119 4027 3875 225 339 31 8 chr12 122548867 122548994 -21237461 - L1ME3 LINE L1 -769 5575 5446 23 0 0 0 chr12 122549136 122549159 -21237296 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 122549455 122549480 -21236975 + GC_rich Low_complexity Low_complexity 1 25 0 1827 158 27 3 chr12 122549967 122550265 -21236190 + AluJo SINE Alu 1 305 -7 1280 229 27 33 chr12 122550265 122550293 -21236162 - L1MC3 LINE L1 -14 7771 7744 2026 142 3 3 chr12 122550293 122550589 -21235866 + AluSx SINE Alu 1 296 -16 1280 229 27 33 chr12 122550589 122550927 -21235528 - L1MC3 LINE L1 -41 7744 7407 1378 140 0 0 chr12 122551123 122551330 -21235125 + AluJb SINE Alu 100 306 -6 385 154 15 0 chr12 122551581 122551646 -21234809 - L2 LINE L2 -1 3312 3247 430 212 76 30 chr12 122551937 122552069 -21234386 - L1ME3 LINE L1 -123 6039 5902 986 188 0 0 chr12 122552073 122552249 -21234206 - AluJb SINE Alu -4 308 133 1670 243 54 41 chr12 122552260 122552336 -21234119 - L1ME3 LINE L1 -266 5898 5824 2114 116 3 25 chr12 122552336 122552655 -21233800 - AluJb SINE Alu 0 312 1 1670 243 54 41 chr12 122552655 122553006 -21233449 - L1ME3 LINE L1 -340 5824 5458 1662 97 0 4 chr12 122553006 122553232 -21233223 - AluSg/x SINE Alu 0 310 86 1670 243 54 41 chr12 122553232 122553436 -21233019 - L1ME3 LINE L1 -706 5458 5258 2338 83 0 3 chr12 122553497 122553798 -21232657 - AluSg SINE Alu -10 300 1 1143 59 0 0 chr12 122553800 122553935 -21232520 - AluSq/x SINE Alu -177 135 1 391 276 11 50 chr12 122553970 122554151 -21232304 - L2 LINE L2 -344 2970 2797 1077 103 0 12 chr12 122554298 122554463 -21231992 - AluY SINE Alu -2 309 147 864 107 33 0 chr12 122554631 122554752 -21231703 + AluSq/x SINE Alu 1 125 -188 2172 108 6 10 chr12 122554762 122555076 -21231379 + AluSq SINE Alu 1 313 0 471 263 112 27 chr12 122555085 122555309 -21231146 + MIR SINE MIR 20 262 0 479 292 141 13 chr12 122556280 122556603 -21229852 - L2 LINE L2 -165 3107 2727 2967 176 39 45 chr12 122556786 122557317 -21229138 - MER39 LTR ERV1 0 707 179 850 117 15 44 chr12 122557317 122557454 -21229001 - FLAM_C SINE Alu 0 133 1 2967 176 39 45 chr12 122557454 122557633 -21228822 - MER39 LTR ERV1 -528 179 1 321 205 114 74 chr12 122557714 122557860 -21228595 - MIR SINE MIR -63 145 12 326 149 33 165 chr12 122557948 122558034 -21228421 + Charlie8 DNA MER1_type 85 152 -189 2266 119 0 0 chr12 122558034 122558346 -21228109 + AluSx SINE Alu 1 312 0 326 149 33 165 chr12 122558346 122558380 -21228075 + Charlie8 DNA MER1_type 152 189 -152 213 300 43 0 chr12 122558572 122558642 -21227813 + MIR3 SINE MIR 114 186 -22 191 209 0 23 chr12 122558656 122558699 -21227756 + MIR SINE MIR 114 155 -107 677 263 78 5 chr12 122558727 122558932 -21227523 - MIR SINE MIR -6 256 37 268 265 72 0 chr12 122559336 122559419 -21227036 + MIR SINE MIR 58 146 -116 210 385 13 0 chr12 122559731 122559809 -21226646 - MIR SINE MIR -79 183 105 474 18 0 0 chr12 122559946 122560001 -21226454 + (GGA)n Simple_repeat Simple_repeat 2 56 0 337 307 124 7 chr12 122560044 122560197 -21226258 + MIR SINE MIR 60 230 -32 2144 113 0 7 chr12 122560255 122560564 -21225891 - AluSx SINE Alu -5 307 1 569 278 80 0 chr12 122560568 122560744 -21225711 - MIR SINE MIR -14 248 59 381 280 56 8 chr12 122561576 122561701 -21224754 + MIR SINE MIR 51 181 -81 22 35 0 0 chr12 122561941 122561970 -21224485 + GC_rich Low_complexity Low_complexity 1 29 0 273 261 72 13 chr12 122562369 122562511 -21223944 - L1ME4a LINE L1 0 6121 5968 1517 140 6 100 chr12 122562511 122562840 -21223615 - AluJo SINE Alu -4 298 1 1637 71 33 0 chr12 122563065 122563275 -21223180 - AluSx SINE Alu -95 217 1 392 256 29 22 chr12 122563277 122563414 -21223041 - L1ME4a LINE L1 -385 5736 5599 3977 146 17 61 chr12 122563431 122564000 -21222455 - L1MB7 LINE L1 -13 6171 5579 2027 130 3 0 chr12 122564000 122564292 -21222163 + AluSx SINE Alu 1 293 -19 3977 146 17 61 chr12 122564292 122564484 -21221971 - L1MB7 LINE L1 -605 5579 5450 1597 161 0 90 chr12 122564484 122564693 -21221762 - AluJo SINE Alu -10 302 131 221 0 0 33 chr12 122564693 122564723 -21221732 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1597 161 0 90 chr12 122564723 122564835 -21221620 - AluJo SINE Alu -181 131 10 3977 146 17 61 chr12 122564835 122564937 -21221518 - L1MB7 LINE L1 -734 5450 5345 979 168 58 0 chr12 122565089 122565297 -21221158 - L1MB7 LINE L1 -20 6164 5945 554 392 80 8 chr12 122565304 122565694 -21220761 - L1ME4a LINE L1 -757 5389 4972 1921 114 21 0 chr12 122566297 122566577 -21219878 - AluSx SINE Alu -16 296 11 434 273 10 0 chr12 122568448 122568547 -21217908 - MIR SINE MIR -81 181 82 237 368 53 36 chr12 122568791 122569038 -21217417 - L2 LINE L2 0 3272 3022 381 233 248 19 chr12 122569665 122569875 -21216580 - L2 LINE L2 -245 3068 2811 2030 95 7 30 chr12 122569891 122570070 -21216385 - AluSg SINE Alu 0 310 137 2218 107 3 3 chr12 122570070 122570380 -21216075 - AluSp SINE Alu -3 310 1 2030 95 7 30 chr12 122570380 122570514 -21215941 - AluSg SINE Alu -173 137 1 525 173 192 0 chr12 122570519 122570623 -21215832 - FRAM SINE Alu -22 154 31 210 378 22 0 chr12 122571013 122571103 -21215352 - MER5A DNA MER1_type -8 181 90 208 205 0 0 chr12 122571447 122571486 -21214969 + L2 LINE L2 3221 3259 -13 502 148 102 0 chr12 122571945 122572033 -21214422 + FRAM SINE Alu 60 156 -20 1377 128 104 32 chr12 122572059 122572309 -21214146 + AluJo SINE Alu 35 302 -10 208 230 149 0 chr12 122572311 122572385 -21214070 - MIR SINE MIR -79 129 45 294 103 191 15 chr12 122572609 122572677 -21213778 + MER103 DNA DNA 9 88 -78 886 135 0 0 chr12 122572867 122572993 -21213462 - AluSg/x SINE Alu -17 293 168 247 259 71 12 chr12 122573200 122573285 -21213170 - MIR SINE MIR -117 145 56 215 288 68 0 chr12 122574168 122574227 -21212228 - MIR SINE MIR -90 172 110 234 301 92 4 chr12 122574741 122574832 -21211623 - MIR SINE MIR -69 139 49 2198 103 0 13 chr12 122574839 122575150 -21211305 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 122578478 122578503 -21207952 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1766 138 3 30 chr12 122580311 122580616 -21205839 + AluJb SINE Alu 1 297 -15 1610 105 70 0 chr12 122580657 122580885 -21205570 + AluSx SINE Alu 53 296 -16 2239 100 0 0 chr12 122581818 122582109 -21204346 - AluSx SINE Alu -21 291 1 302 333 88 0 chr12 122582118 122582232 -21204223 + MIR SINE MIR 72 195 -67 306 336 183 30 chr12 122582520 122582886 -21203569 - HAL1 LINE L1 -1206 1301 880 225 0 0 0 chr12 122582910 122582935 -21203520 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 498 207 7 59 chr12 122583634 122583769 -21202686 + MIR SINE MIR 23 150 -58 424 303 206 6 chr12 122583987 122584162 -21202293 + MIR SINE MIR 45 254 -8 2010 143 0 3 chr12 122584195 122584489 -21201966 - AluSx SINE Alu -15 297 5 2174 125 3 0 chr12 122584491 122584802 -21201653 - AluSx SINE Alu 0 312 1 202 278 49 99 chr12 122585222 122585323 -21201132 + L2 LINE L2 2680 2772 -542 2217 107 3 0 chr12 122585323 122585621 -21200834 + AluSx SINE Alu 1 299 -13 202 278 49 99 chr12 122585621 122585681 -21200774 + L2 LINE L2 2772 2833 -481 295 198 12 37 chr12 122585741 122585822 -21200633 + L2 LINE L2 2965 3043 -229 446 193 48 0 chr12 122585886 122585969 -21200486 + MIR SINE MIR 34 120 -142 1188 111 0 0 chr12 122585975 122586137 -21200318 - AluSg/x SINE Alu -21 291 130 298 122 0 0 chr12 122586876 122586925 -21199530 - Alu SINE Alu -7 293 245 2015 114 4 0 chr12 122586996 122587300 -21199155 + AluSx SINE Alu 1 305 0 1886 199 92 23 chr12 122587302 122587959 -21198496 - L1MB7 LINE L1 -32 6152 5396 1620 170 20 23 chr12 122588149 122588449 -21198006 + AluJb SINE Alu 1 299 -13 360 0 0 0 chr12 122588955 122588995 -21197460 + (TG)n Simple_repeat Simple_repeat 1 40 0 1878 109 49 4 chr12 122588995 122589262 -21197193 - AluSx SINE Alu -33 279 1 565 186 7 7 chr12 122589316 122589461 -21196994 + CT-rich Low_complexity Low_complexity 2 146 0 426 274 0 0 chr12 122589504 122589606 -21196849 + MER81 DNA DNA 12 113 -1 2121 120 0 13 chr12 122589995 122590311 -21196144 - AluSx SINE Alu 0 312 1 204 301 68 0 chr12 122590675 122590748 -21195707 - L2 LINE L2 -54 3259 3182 * 437 341 34 0 chr12 122590736 122590912 -21195543 + MIR SINE MIR 12 193 -69 28 0 0 0 chr12 122691101 122691129 -21095326 + AT_rich Low_complexity Low_complexity 1 28 0 44063 30 22 2 chr12 122691277 122697307 -21089148 - L1PA2 LINE L1 0 6155 4 849 174 0 0 chr12 122697362 122697494 -21088961 + AluJ SINE Alu 1 132 -170 1174 235 69 81 chr12 122697551 122698104 -21088351 - L2 LINE L2 -707 2607 2007 824 288 137 17 chr12 122698273 122698617 -21087838 + MLT1K LTR MaLR 204 588 0 251 289 44 39 chr12 122698620 122698737 -21087718 + L1MC4a LINE L1 5755 5870 -1938 3746 165 32 21 chr12 122698737 122698922 -21087533 + L1MB8 LINE L1 5421 5603 -575 2181 109 11 0 chr12 122698922 122699205 -21087250 + AluSq SINE Alu 1 286 -27 513 0 0 0 chr12 122699205 122699262 -21087193 + (CA)n Simple_repeat Simple_repeat 2 58 0 3746 165 32 21 chr12 122699262 122699819 -21086636 + L1MB8 LINE L1 5602 6172 -6 251 289 44 39 chr12 122699819 122699905 -21086550 + L1MC4a LINE L1 5870 5959 -1849 1135 140 0 0 chr12 122700645 122700809 -21085646 + AluJ SINE Alu 137 300 -12 183 217 167 17 chr12 122700811 122700871 -21085584 + L2 LINE L2 3016 3084 -188 249 108 0 0 chr12 122701031 122701068 -21085387 + (TGAG)n Simple_repeat Simple_repeat 4 40 0 335 282 0 12 chr12 122701806 122701891 -21084564 + MIR SINE MIR 42 125 -83 2404 98 0 0 chr12 122702062 122702369 -21084086 + AluSx SINE Alu 1 307 -5 455 214 214 13 chr12 122702590 122702744 -21083711 - MIR SINE MIR -15 247 63 202 270 45 22 chr12 122703328 122703417 -21083038 - L2 LINE L2 -2 3311 3221 808 169 0 0 chr12 122703580 122703710 -21082745 + FRAM SINE Alu 21 150 -26 1972 142 6 22 chr12 122703791 122704107 -21082348 - AluJb SINE Alu -1 311 1 451 248 22 22 chr12 122704112 122704249 -21082206 - MIR SINE MIR -50 212 76 1550 195 103 17 chr12 122704255 122704556 -21081899 - MLT1D LTR MaLR -8 497 212 1546 181 13 40 chr12 122704556 122704855 -21081600 - AluJo SINE Alu -21 291 1 1550 195 103 17 chr12 122704855 122705087 -21081368 - MLT1D LTR MaLR -293 212 1 214 257 40 27 chr12 122705087 122705161 -21081294 - MIR SINE MIR -181 81 7 605 315 22 9 chr12 122705264 122705496 -21080959 + MIR SINE MIR 27 261 -1 2093 133 0 35 chr12 122705633 122705949 -21080506 + AluJb SINE Alu 1 305 -7 1875 116 0 27 chr12 122706763 122707022 -21079433 + AluSx SINE Alu 1 252 -60 308 163 0 0 chr12 122707181 122707230 -21079225 + L1ME1 LINE L1 6061 6109 -57 665 231 34 108 chr12 122707399 122707577 -21078878 - L2 LINE L2 -1 3312 3122 2199 109 0 16 chr12 122707577 122707881 -21078574 + AluY SINE Alu 5 303 -8 665 231 34 108 chr12 122707881 122707983 -21078472 - L2 LINE L2 -191 3122 3061 2225 113 0 7 chr12 122707983 122708283 -21078172 - AluSx SINE Alu -9 303 6 665 231 34 108 chr12 122708283 122708352 -21078103 - L2 LINE L2 -252 3061 2988 1151 245 61 39 chr12 122708578 122708828 -21077627 - L2 LINE L2 -17 3296 3053 2092 127 124 26 chr12 122708828 122709215 -21077240 - MSTA LTR MaLR -2 426 2 1151 245 61 39 chr12 122709215 122709500 -21076955 - L2 LINE L2 -260 3053 2748 1527 161 3 95 chr12 122709503 122709820 -21076635 + AluJo SINE Alu 18 305 -7 1917 162 24 0 chr12 122709870 122710166 -21076289 - AluSx SINE Alu -9 303 1 279 261 0 0 chr12 122710491 122710560 -21075895 + MIR SINE MIR 70 138 -70 204 259 0 19 chr12 122710682 122710736 -21075719 + L2 LINE L2 3186 3238 -75 700 121 10 0 chr12 122710740 122710839 -21075616 - MLT1B LTR MaLR 0 390 291 320 232 178 43 chr12 122710953 122711138 -21075317 + L1ME4a LINE L1 5804 6013 -108 317 289 0 0 chr12 122711319 122711402 -21075053 - MIR SINE MIR 0 262 180 * 848 227 169 56 chr12 122711399 122711619 -21074836 + L2 LINE L2 2853 3047 -266 306 0 0 0 chr12 122711619 122711653 -21074802 + (CA)n Simple_repeat Simple_repeat 2 35 0 848 227 169 56 chr12 122711653 122711828 -21074627 + L2 LINE L2 3047 3293 -20 483 245 147 0 chr12 122711852 122711995 -21074460 - MIR SINE MIR -84 178 15 2099 108 3 10 chr12 122762302 122762608 -21023847 - AluSq SINE Alu -9 304 1 427 213 0 0 chr12 122762608 122762683 -21023772 - Tigger3(Golem) DNA MER2_type -2953 76 2 598 296 109 17 chr12 122762698 122763133 -21023322 - L1MC/D LINE L1 -743 5403 5122 229 290 0 0 chr12 122763169 122763231 -21023224 + MIR SINE MIR 158 219 -43 879 107 8 0 chr12 122763578 122763709 -21022746 - FRAM SINE Alu -11 165 34 300 263 26 0 chr12 122763714 122763790 -21022665 + L2 LINE L2 3182 3259 -13 22 35 0 0 chr12 122764241 122764270 -21022185 + AT_rich Low_complexity Low_complexity 1 29 0 1330 194 57 35 chr12 122764270 122764578 -21021877 + AluJo SINE Alu 2 315 0 1844 121 68 0 chr12 122764690 122764971 -21021484 + AluSp SINE Alu 1 300 -13 189 0 0 0 chr12 122765301 122765322 -21021133 + (A)n Simple_repeat Simple_repeat 1 21 0 212 256 0 0 chr12 122765591 122765634 -21020821 + L2 LINE L2 3271 3313 0 1708 191 3 0 chr12 122765668 122765977 -21020478 + AluJo SINE Alu 1 310 -2 200 140 0 18 chr12 122766115 122766161 -21020294 + (TA)n Simple_repeat Simple_repeat 1 47 -9 2329 68 0 0 chr12 122766161 122766454 -21020001 - AluY SINE Alu -18 293 1 200 140 0 18 chr12 122766454 122766464 -21019991 + (TA)n Simple_repeat Simple_repeat 47 56 0 1831 151 0 3 chr12 122766464 122766756 -21019699 - AluSx SINE Alu -21 291 1 840 158 0 0 chr12 122766782 122766915 -21019540 + FLAM_C SINE Alu 1 133 0 186 43 0 0 chr12 122766972 122766995 -21019460 + (CA)n Simple_repeat Simple_repeat 2 24 0 2086 118 0 0 chr12 122767162 122767459 -21018996 + AluSq SINE Alu 1 297 -16 1228 170 146 4 chr12 122767726 122767979 -21018476 + AluJo SINE Alu 1 289 -23 913 163 0 0 chr12 122768021 122768168 -21018287 + L1PB4 LINE L1 6000 6146 -10 316 319 14 57 chr12 122768413 122768554 -21017901 - L1M4 LINE L1 -365 5813 5679 720 95 9 9 chr12 122768569 122768674 -21017781 + AluJb SINE Alu 5 109 -203 259 88 0 0 chr12 122768674 122768708 -21017747 + AluJb SINE Alu 87 120 -182 396 0 0 0 chr12 122768709 122768753 -21017702 + (CA)n Simple_repeat Simple_repeat 2 45 0 256 213 0 0 chr12 122768753 122768800 -21017655 + AluY SINE Alu 123 169 -132 429 20 0 0 chr12 122768800 122768850 -21017605 + (CA)n Simple_repeat Simple_repeat 2 51 0 860 142 88 0 chr12 122768850 122768998 -21017457 + AluSg/x SINE Alu 132 292 -20 535 303 44 29 chr12 122769205 122769595 -21016860 + L2 LINE L2 2632 3313 0 1784 154 0 22 chr12 122769667 122769978 -21016477 + AluJo SINE Alu 1 304 -8 331 268 7 87 chr12 122769996 122770134 -21016321 - L1MC4 LINE L1 -1339 6703 6577 1966 149 0 0 chr12 122770139 122770427 -21016028 + AluSx SINE Alu 7 294 -18 188 344 0 0 chr12 122770481 122770542 -21015913 + L2 LINE L2 3134 3194 -78 238 262 325 21 chr12 122771533 122771770 -21014685 + L2 LINE L2 3005 3313 0 1702 145 28 3 chr12 122771791 122772073 -21014382 + AluJo SINE Alu 1 289 -23 792 184 0 15 chr12 122772105 122772241 -21014214 + AluJo SINE Alu 2 135 -177 243 136 17 85 chr12 122772248 122772307 -21014148 + L1ME1 LINE L1 5922 5976 -190 694 230 6 12 chr12 122772328 122772493 -21013962 + L1MA10 LINE L1 6170 6333 -1 2334 91 7 0 chr12 122773077 122773385 -21013070 + AluSg SINE Alu 1 310 0 569 237 53 0 chr12 122773635 122773766 -21012689 + MIR SINE MIR 56 193 -69 328 195 12 37 chr12 122773866 122773948 -21012507 + MIR SINE MIR 112 191 -71 23 33 0 0 chr12 122774410 122774440 -21012015 + GC_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr12 122774542 122774579 -21011876 + GC_rich Low_complexity Low_complexity 1 37 0 373 207 27 99 chr12 122775070 122775175 -21011280 + MIR SINE MIR 55 152 -105 1379 167 120 4 chr12 122775175 122775433 -21011022 + AluJb SINE Alu 1 288 -14 2275 57 0 0 chr12 122775441 122775724 -21010731 + AluSc SINE Alu 1 283 -26 1668 109 0 19 chr12 122775760 122776017 -21010438 + AluJb SINE Alu 5 256 -56 913 98 8 0 chr12 122776023 122776155 -21010300 + FLAM_C SINE Alu 11 143 0 327 365 22 29 chr12 122776177 122776314 -21010141 - L2 LINE L2 -615 2699 2564 1979 128 3 0 chr12 122776361 122776659 -21009796 + AluSx SINE Alu 1 299 -13 230 333 0 14 chr12 122776659 122776731 -21009724 - MIR SINE MIR -172 90 20 200 302 94 31 chr12 122776911 122777007 -21009448 + L2 LINE L2 2626 2727 -587 1007 79 0 0 chr12 122777008 122777134 -21009321 + AluSq/x SINE Alu 5 130 -182 2002 118 0 41 chr12 122777142 122777279 -21009176 + AluSx SINE Alu 1 142 -170 2547 52 0 0 chr12 122777279 122777584 -21008871 + AluY SINE Alu 1 305 -6 2002 118 0 41 chr12 122777584 122777761 -21008694 + AluSx SINE Alu 142 302 -10 735 176 0 15 chr12 122777855 122777986 -21008469 + AluJo/FLAM SINE Alu 3 131 -171 2128 107 0 10 chr12 122777987 122778287 -21008168 - AluSx SINE Alu -15 297 1 662 182 0 0 chr12 122778307 122778417 -21008038 - FLAM_C SINE Alu -19 124 15 400 344 46 31 chr12 122778439 122778698 -21007757 + L2 LINE L2 2812 3074 -198 2272 75 7 7 chr12 122778790 122779095 -21007360 - AluY SINE Alu -6 305 1 481 251 212 0 chr12 122779113 122779270 -21007185 + MIR SINE MIR 74 262 0 232 203 0 87 chr12 122779338 122779407 -21007048 + L2 LINE L2 2669 2731 -583 230 319 52 109 chr12 122779514 122779838 -21006617 + L2 LINE L2 2890 3192 -80 842 163 0 15 chr12 122779838 122779973 -21006482 - FLAM_C SINE Alu 0 133 1 230 319 52 109 chr12 122779973 122780015 -21006440 + L2 LINE L2 3192 3235 -37 294 104 15 134 chr12 122780044 122780139 -21006316 + FLAM SINE Alu 53 133 0 2286 80 0 10 chr12 122780150 122780462 -21005993 - AluY SINE Alu -2 309 1 210 238 16 16 chr12 122780681 122780744 -21005711 + (CA)n Simple_repeat Simple_repeat 2 64 0 1512 92 0 0 chr12 122780748 122780989 -21005466 - AluSg/x SINE Alu 0 325 85 1322 136 9 9 chr12 122781026 122781239 -21005216 + AluJb SINE Alu 86 298 -14 2180 93 0 13 chr12 122781242 122781378 -21005077 + AluSx SINE Alu 1 137 -175 2276 75 0 0 chr12 122781378 122781670 -21004785 + AluY SINE Alu 1 292 -19 2180 93 0 13 chr12 122781670 122781835 -21004620 + AluSx SINE Alu 137 298 -14 321 200 175 3 chr12 122782579 122782708 -21003747 + MIR SINE MIR 8 196 -66 2364 93 0 3 chr12 122782843 122783155 -21003300 + AluSx SINE Alu 2 312 0 326 250 38 76 chr12 122783157 122783289 -21003166 - MIR SINE MIR 0 262 136 309 157 0 0 chr12 122783290 122783341 -21003114 - Alu SINE Alu -2 306 256 772 181 58 119 chr12 122783430 122783690 -21002765 - AluJo SINE Alu -67 245 2 1830 122 34 3 chr12 122783692 122783988 -21002467 - AluSx SINE Alu -7 305 1 332 281 38 75 chr12 122785601 122785697 -21000758 + MIR SINE MIR 48 137 -125 1745 106 91 0 chr12 122785697 122785962 -21000493 + AluSx SINE Alu 1 289 -23 332 281 38 75 chr12 122785962 122786025 -21000430 + MIR SINE MIR 137 201 -61 485 181 43 0 chr12 122788979 122789073 -20997382 - AluJ/FLAM SINE Alu -213 99 2 314 256 184 0 chr12 122789080 122789205 -20997250 - L1MC/D LINE L1 -2201 5607 5460 602 269 41 0 chr12 122789207 122789378 -20997077 + AluJb SINE Alu 122 299 -13 1896 115 31 14 chr12 122789378 122789666 -20996789 + AluSx SINE Alu 1 293 -19 1139 153 56 5 chr12 122789774 122789970 -20996485 + AluJo SINE Alu 85 290 -22 942 202 128 23 chr12 122789974 122790231 -20996224 - Charlie1b DNA MER1_type -221 302 19 2533 11 4 0 chr12 122790232 122790508 -20995947 + AluYa5 SINE Alu 1 277 -34 297 51 0 0 chr12 122790522 122790561 -20995894 + (TAA)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr12 122790561 122790582 -20995873 + AT_rich Low_complexity Low_complexity 1 21 0 259 180 49 16 chr12 122790582 122790643 -20995812 - MLT1G1 LTR MaLR -532 63 1 2027 127 7 10 chr12 122790665 122790800 -20995655 + AluSx SINE Alu 1 135 -177 1977 104 0 0 chr12 122790800 122791050 -20995405 + AluSg SINE Alu 50 299 -11 2027 127 7 10 chr12 122791050 122791214 -20995241 + AluSx SINE Alu 135 299 -13 1627 144 0 109 chr12 122791281 122791620 -20994835 + AluJb SINE Alu 1 302 0 1862 124 40 47 chr12 122791694 122791992 -20994463 - AluJb SINE Alu -16 296 1 23 0 0 0 chr12 122792518 122792541 -20993914 + AT_rich Low_complexity Low_complexity 1 23 0 369 299 0 9 chr12 122792643 122792750 -20993705 + MER5B DNA MER1_type 6 111 -67 2180 83 0 0 chr12 122792753 122793017 -20993438 - AluSq SINE Alu -13 300 37 1850 183 0 0 chr12 122793023 122793324 -20993131 - AluJo SINE Alu -11 301 1 1042 116 14 0 chr12 122793966 122794112 -20992343 + AluSg SINE Alu 1 148 -162 579 235 9 0 chr12 122794350 122794465 -20991990 + FLAM_A SINE Alu 6 121 -21 1662 177 45 0 chr12 122794481 122794769 -20991686 - AluJb SINE Alu -3 309 9 1413 156 12 12 chr12 122794885 122795129 -20991326 + AluJb SINE Alu 67 310 -2 205 51 51 0 chr12 122795754 122795793 -20990662 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1816 136 29 0 chr12 122795799 122796072 -20990383 - AluJb SINE Alu -31 281 1 364 204 133 0 chr12 122796247 122796345 -20990110 - MER5C DNA MER1_type -213 111 1 218 157 39 39 chr12 122796452 122796503 -20989952 + MIR3 SINE MIR 152 202 -6 406 160 0 40 chr12 122796747 122796822 -20989633 + AluJb SINE Alu 165 236 -66 2138 125 3 3 chr12 122797260 122797557 -20988898 + AluSx SINE Alu 1 297 -15 702 225 0 0 chr12 122797674 122797803 -20988652 + FLAM_A SINE Alu 1 129 -4 2275 79 3 30 chr12 122798233 122798538 -20987917 + AluY SINE Alu 1 297 -14 285 192 41 27 chr12 122798547 122798620 -20987835 + MER5A DNA MER1_type 13 86 -103 2045 138 3 0 chr12 122798767 122799058 -20987397 - AluSx SINE Alu -20 292 1 826 175 39 13 chr12 122799062 122799216 -20987239 - FRAM SINE Alu -18 158 1 229 220 80 0 chr12 122799221 122799271 -20987184 + MER5A DNA MER1_type 130 183 -6 1005 185 0 17 chr12 122799512 122799690 -20986765 + FAM SINE Alu 1 175 0 2482 77 0 0 chr12 122800041 122800340 -20986115 + AluSq SINE Alu 1 299 -14 1687 156 43 14 chr12 122800630 122800912 -20985543 - AluJo SINE Alu -22 290 1 197 215 62 54 chr12 122801749 122801879 -20984576 - L2 LINE L2 -356 2957 2827 1865 159 7 0 chr12 122802046 122802341 -20984114 - AluJb SINE Alu -15 297 1 26 74 0 0 chr12 122802389 122802443 -20984012 + AT_rich Low_complexity Low_complexity 1 54 0 200 282 39 0 chr12 122802530 122802608 -20983847 + (TA)n Simple_repeat Simple_repeat 1 81 0 747 142 53 0 chr12 122802628 122802741 -20983714 - FLAM_C SINE Alu -23 120 2 2248 93 0 53 chr12 122803034 122803357 -20983098 + AluSg SINE Alu 1 306 -4 25 0 0 0 chr12 122803394 122803419 -20983036 + AT_rich Low_complexity Low_complexity 1 25 0 2207 127 0 6 chr12 122803462 122803776 -20982679 + AluSx SINE Alu 1 312 0 1752 156 3 22 chr12 122803788 122804102 -20982353 + AluJb SINE Alu 2 309 -3 788 195 73 6 chr12 122804251 122804415 -20982040 - MER58A DNA MER1_type -48 176 2 623 138 44 77 chr12 122804423 122804604 -20981851 - MER33 DNA MER1_type -1 362 188 825 154 132 0 chr12 122804605 122804741 -20981714 + FRAM SINE Alu 1 152 -24 749 169 38 12 chr12 122804756 122804916 -20981539 - MER33 DNA MER1_type -160 164 1 1991 125 3 16 chr12 122805101 122805406 -20981049 - AluJb SINE Alu -2 310 10 21 0 0 0 chr12 122805457 122805478 -20980977 + AT_rich Low_complexity Low_complexity 1 21 0 1484 177 13 50 chr12 122805567 122805866 -20980589 + AluJo SINE Alu 1 288 -24 2331 89 3 0 chr12 122805957 122806250 -20980205 + AluSq SINE Alu 20 313 0 632 182 13 84 chr12 122806301 122806359 -20980096 - Charlie4 DNA MER1_type -1803 158 97 2071 131 10 0 chr12 122806359 122806700 -20979755 + AluSx SINE Alu 1 312 0 632 182 13 84 chr12 122806700 122806795 -20979660 - Charlie4 DNA MER1_type -1864 97 16 2481 87 0 3 chr12 122806877 122807188 -20979267 + AluSx SINE Alu 1 310 -2 312 245 194 22 chr12 122807875 122808014 -20978441 + L1ME4a LINE L1 5774 5936 -185 2182 124 3 10 chr12 122808676 122808983 -20977472 - AluSx SINE Alu -7 305 1 549 271 109 13 chr12 122809021 122809250 -20977205 + L1MC4a LINE L1 5501 5751 -370 2569 159 39 25 chr12 122809260 122809745 -20976710 + MLT1D LTR MaLR 10 501 -4 359 288 73 26 chr12 122809746 122809937 -20976518 + L1MC4a LINE L1 5743 5942 -1866 2145 134 3 0 chr12 122810633 122810940 -20975515 + AluSq SINE Alu 1 308 -5 2380 100 3 0 chr12 122810944 122811254 -20975201 + AluSp SINE Alu 1 311 -2 1614 175 30 26 chr12 122811444 122811601 -20974854 - AluJo SINE Alu -8 304 144 2332 56 0 78 chr12 122811601 122811923 -20974532 - AluY SINE Alu -14 297 1 1614 175 30 26 chr12 122811923 122812068 -20974387 - AluJo SINE Alu -168 144 1 1462 184 56 14 chr12 122812096 122812384 -20974071 - AluJb SINE Alu -12 300 1 634 204 39 123 chr12 122812443 122812598 -20973857 + MIR SINE MIR 1 127 -135 2007 101 66 0 chr12 122812598 122812885 -20973570 + AluSx SINE Alu 1 306 -6 634 204 39 123 chr12 122812885 122812989 -20973466 + MIR SINE MIR 127 238 -24 2243 120 3 0 chr12 122813062 122813363 -20973092 + AluSx SINE Alu 1 302 -10 1544 181 50 4 chr12 122813394 122813671 -20972784 + AluJo SINE Alu 1 290 -22 337 300 36 0 chr12 122813679 122813789 -20972666 - MIR SINE MIR -148 114 1 2002 196 80 36 chr12 122814242 122814717 -20971738 - L1ME1 LINE L1 -1 6165 5670 1720 148 13 39 chr12 122815126 122815436 -20971019 + AluSx SINE Alu 1 302 -10 751 254 108 81 chr12 122815549 122815581 -20970874 + L2 LINE L2 2698 2728 -585 2584 53 0 0 chr12 122815581 122815885 -20970570 - AluY SINE Alu -7 304 1 751 254 108 81 chr12 122815885 122816170 -20970285 + L2 LINE L2 2728 3004 -309 2006 135 3 13 chr12 122816170 122816482 -20969973 + AluSx SINE Alu 1 309 -3 751 254 108 81 chr12 122816482 122816497 -20969958 + L2 LINE L2 3004 3017 -296 619 181 63 24 chr12 122816497 122816624 -20969831 + FLAM_C SINE Alu 1 132 -1 751 254 108 81 chr12 122816624 122816866 -20969589 + L2 LINE L2 3017 3309 -4 2261 114 3 0 chr12 122816928 122817227 -20969228 + AluSx SINE Alu 1 300 -12 2144 113 7 3 chr12 122817560 122817853 -20968602 + AluSx SINE Alu 1 294 -18 283 309 0 11 chr12 122817916 122818010 -20968445 - LTR16A1 LTR ERVL -1 456 364 2144 123 3 19 chr12 122818010 122818327 -20968128 + AluSx SINE Alu 1 312 0 2309 94 0 16 chr12 122818345 122818654 -20967801 + AluY SINE Alu 3 306 -5 253 79 0 26 chr12 122818654 122818692 -20967763 - L1ME LINE L1 -358 5812 5776 387 188 97 49 chr12 122818695 122818839 -20967616 - L1ME LINE L1 -344 5818 5668 2173 94 3 66 chr12 122818906 122819225 -20967230 + AluSp SINE Alu 1 299 -14 311 322 16 16 chr12 122820650 122820771 -20965684 - MER5A DNA MER1_type -19 170 50 2282 119 0 7 chr12 122820985 122821295 -20965160 - AluSx SINE Alu -1 311 4 2351 91 10 0 chr12 122821352 122821648 -20964807 - AluSq SINE Alu -14 299 1 1904 160 3 7 chr12 122821651 122821951 -20964504 - AluJb SINE Alu -13 299 1 279 0 0 0 chr12 122822611 122822642 -20963813 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 213 108 0 0 chr12 122822762 122822799 -20963656 + (T)n Simple_repeat Simple_repeat 1 37 0 1143 208 135 4 chr12 122822807 122823067 -20963388 - AluJb SINE Alu -5 297 4 515 178 69 0 chr12 122823229 122823247 -20963208 - L1M3 LINE L1 -540 5794 5779 2001 132 34 0 chr12 122823247 122823542 -20962913 - AluSx SINE Alu -7 305 1 515 178 69 0 chr12 122823542 122823624 -20962831 - L1M3 LINE L1 -555 5779 5687 419 233 61 50 chr12 122823858 122823941 -20962514 - L1MC5 LINE L1 -46 7915 7834 2173 120 7 0 chr12 122823941 122824242 -20962213 - AluSx SINE Alu -9 303 1 419 233 61 50 chr12 122824242 122824338 -20962117 - L1MC5 LINE L1 -127 7834 7734 2345 105 3 0 chr12 122824352 122824657 -20961798 - AluSx SINE Alu -6 306 1 1840 172 0 3 chr12 122825581 122825878 -20960577 - AluJb SINE Alu -12 300 5 646 128 0 18 chr12 122825880 122825989 -20960466 - AluJb SINE Alu -175 137 31 4455 42 46 135 chr12 122826059 122826817 -20959638 - L1PA8 LINE L1 -4 6168 5478 374 285 49 32 chr12 122826944 122827067 -20959388 + L2 LINE L2 3142 3266 -6 242 253 147 0 chr12 122827228 122827303 -20959152 - MIR SINE MIR -86 176 91 219 36 0 0 chr12 122827318 122827346 -20959109 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1821 167 7 0 chr12 122827351 122827632 -20958823 - AluJo SINE Alu -29 283 1 281 300 22 22 chr12 122827747 122827837 -20958618 - L2 LINE L2 -42 3230 3141 1440 163 4 0 chr12 122827878 122828105 -20958350 + AluJb SINE Alu 5 232 -80 2448 69 0 20 chr12 122828574 122828880 -20957575 - AluY SINE Alu -10 301 2 2404 77 3 0 chr12 122829119 122829417 -20957038 + AluY SINE Alu 1 299 -12 2267 114 0 0 chr12 122829770 122830068 -20956387 + AluSx SINE Alu 2 299 -13 25 0 0 0 chr12 122830069 122830094 -20956361 + AT_rich Low_complexity Low_complexity 1 25 0 2347 104 0 0 chr12 122830525 122830832 -20955623 + AluSx SINE Alu 6 312 0 246 32 0 0 chr12 122832445 122832476 -20953979 + (CCG)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr12 122832573 122832602 -20953853 + GC_rich Low_complexity Low_complexity 1 29 0 297 0 0 0 chr12 122832685 122832718 -20953737 + (CCG)n Simple_repeat Simple_repeat 2 34 0 1855 124 25 0 chr12 122833368 122833643 -20952812 + AluJo SINE Alu 1 282 -30 2151 105 0 11 chr12 122833855 122834178 -20952277 + AluSx SINE Alu 1 320 0 828 241 15 0 chr12 122834190 122834389 -20952066 + L1ME LINE L1 5604 5805 -316 1918 155 0 13 chr12 122834389 122834692 -20951763 + AluJo SINE Alu 1 299 -13 366 302 67 7 chr12 122834790 122834939 -20951516 - MIR SINE MIR -71 191 34 2312 79 3 57 chr12 122834985 122835300 -20951155 - AluSx SINE Alu -14 298 1 1631 113 0 0 chr12 122835302 122835523 -20950932 - AluSg/x SINE Alu -8 304 84 675 192 0 8 chr12 122835544 122835669 -20950786 - FLAM_C SINE Alu -9 124 1 261 0 0 0 chr12 122836651 122836680 -20949775 + (CA)n Simple_repeat Simple_repeat 2 30 0 2485 53 23 0 chr12 122837152 122837455 -20949000 + AluY SINE Alu 1 310 -1 2086 109 10 23 chr12 122837459 122837763 -20948692 + AluSx SINE Alu 13 312 0 244 327 79 0 chr12 122837842 122837943 -20948512 - L2 LINE L2 -1 3312 3204 217 282 200 27 chr12 122838149 122838259 -20948196 + MIR SINE MIR 42 170 -92 1300 162 24 105 chr12 122838262 122838288 -20948167 - MLT1B LTR MaLR -113 354 327 1747 153 4 4 chr12 122838288 122838597 -20947858 - AluJb SINE Alu 0 309 1 1300 162 24 105 chr12 122838597 122838730 -20947725 - MLT1B LTR MaLR -140 327 185 1698 161 34 0 chr12 122838730 122839021 -20947434 - AluJo SINE Alu -11 301 1 1300 162 24 105 chr12 122839021 122839206 -20947249 - MLT1B LTR MaLR -282 185 1 7655 31 4 8 chr12 122839340 122840359 -20946096 + L1PA5 LINE L1 5139 6154 0 29 47 0 0 chr12 122840359 122840402 -20946053 + AT_rich Low_complexity Low_complexity 1 43 0 1937 123 3 19 chr12 122840402 122840718 -20945737 + AluSx SINE Alu 1 311 -1 410 216 23 72 chr12 122840749 122840911 -20945544 - L1MC4 LINE L1 -1298 7024 1980 344 286 126 46 chr12 122840905 122841195 -20945260 - L1 LINE L1 -2771 3375 2895 * 395 119 9 0 chr12 122841312 122841379 -20945076 - AluS SINE Alu -209 93 35 1541 176 0 4 chr12 122841379 122841646 -20944809 - AluJb SINE Alu -46 266 1 24 0 0 0 chr12 122841974 122841998 -20944457 + AT_rich Low_complexity Low_complexity 1 24 0 914 110 0 0 chr12 122842229 122842347 -20944108 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr12 122842347 122842383 -20944072 + AT_rich Low_complexity Low_complexity 1 36 0 563 234 179 0 chr12 122842632 122842816 -20943639 - MIR SINE MIR -10 252 36 247 273 58 8 chr12 122843345 122843466 -20942989 - L1M4 LINE L1 -1006 5140 5014 2006 106 6 38 chr12 122843467 122843787 -20942668 - AluSx SINE Alu -2 310 1 568 291 35 3 chr12 122843827 122844112 -20942343 - L1M4 LINE L1 -2344 3802 3509 280 143 24 0 chr12 122844153 122844195 -20942260 - MER57A LTR ERV1 -66 337 295 1536 182 6 31 chr12 122844639 122844813 -20941642 - AluJo SINE Alu -2 310 146 2142 115 0 3 chr12 122844813 122845109 -20941346 - AluSx SINE Alu -17 295 1 1536 182 6 31 chr12 122845109 122845252 -20941203 - AluJo SINE Alu -166 146 1 746 219 135 0 chr12 122845342 122845520 -20940935 - MIR SINE MIR -36 226 25 1002 155 6 0 chr12 122845613 122845787 -20940668 - AluSq SINE Alu -5 308 134 2016 129 0 3 chr12 122845787 122846096 -20940359 - AluSx SINE Alu -4 308 1 204 67 0 0 chr12 122846111 122846141 -20940314 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2145 77 35 3 chr12 122846603 122846890 -20939565 - AluY SINE Alu -15 296 1 2131 123 0 7 chr12 122846890 122847200 -20939255 - AluSx SINE Alu -2 310 3 2200 99 6 3 chr12 122847278 122847590 -20938865 - AluSp SINE Alu 0 313 1 1797 154 0 13 chr12 122847590 122847889 -20938566 - AluJb SINE Alu -17 295 1 2311 54 7 3 chr12 122848109 122848403 -20938052 - AluY SINE Alu -16 295 1 371 170 16 0 chr12 122848482 122848591 -20937864 - L1MC4 LINE L1 -1 8041 7707 1060 118 84 89 chr12 122848591 122848787 -20937668 - MER46A DNA MER2_type -2495 236 40 2062 113 3 0 chr12 122848787 122849078 -20937377 - AluSx SINE Alu -20 292 1 1060 118 84 89 chr12 122849078 122849118 -20937337 - MER46A DNA MER2_type -2691 40 1 185 0 40 0 chr12 122849129 122849154 -20937301 + (TC)n Simple_repeat Simple_repeat 2 27 0 2158 54 11 4 chr12 122849333 122849609 -20936846 - AluY SINE Alu -33 278 1 7227 57 0 31 chr12 122849613 122849840 -20936615 - L1PA8 LINE L1 -1 6171 5938 2364 63 3 0 chr12 122849840 122850143 -20936312 - AluY SINE Alu -7 304 1 7227 57 0 31 chr12 122850143 122850858 -20935597 - L1PA8 LINE L1 -234 5938 5255 2363 55 0 0 chr12 122850858 122851150 -20935305 + AluY SINE Alu 1 292 -19 7227 57 0 31 chr12 122851150 122851280 -20935175 - L1PA8 LINE L1 -917 5255 5123 893 54 0 0 chr12 122851280 122851391 -20935064 + AluY SINE Alu 190 300 -11 10973 106 3 15 chr12 122851391 122852212 -20934243 - L1P LINE L1 -3143 3003 2173 2005 131 0 7 chr12 122852212 122852510 -20933945 - AluSg SINE Alu -14 296 1 10973 106 3 15 chr12 122852510 122852521 -20933934 - L1P LINE L1 -3973 2173 2163 2232 95 0 0 chr12 122852521 122852817 -20933638 - AluY SINE Alu -15 296 1 10973 106 3 15 chr12 122852817 122853612 -20932843 - L1P LINE L1 -3983 2163 1395 2119 92 3 0 chr12 122853612 122853917 -20932538 - AluSp SINE Alu 0 306 1 247 128 0 0 chr12 122853917 122853956 -20932499 - L1M4 LINE L1 -569 5609 5571 1981 108 0 75 chr12 122853973 122854155 -20932300 - AluSx SINE Alu -4 308 114 186 43 0 0 chr12 122854155 122854178 -20932277 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1865 125 7 4 chr12 122854178 122854457 -20931998 - AluSq SINE Alu -29 284 5 1981 108 0 75 chr12 122854457 122854606 -20931849 - AluSx SINE Alu -196 116 1 1695 166 81 60 chr12 122854665 122854689 -20931766 - MSTB LTR MaLR -27 418 396 1635 165 3 35 chr12 122854689 122855005 -20931450 - AluJb SINE Alu -6 306 1 1695 166 81 60 chr12 122855005 122855341 -20931114 - MSTB LTR MaLR -49 396 69 2154 124 0 0 chr12 122855341 122855647 -20930808 - AluSx SINE Alu -4 308 3 1695 166 81 60 chr12 122855647 122855661 -20930794 - MSTB LTR MaLR -376 69 57 2074 114 3 0 chr12 122855661 122855950 -20930505 - AluSq SINE Alu -23 290 1 1695 166 81 60 chr12 122855950 122856003 -20930452 - MSTB LTR MaLR -388 57 4 501 208 49 35 chr12 122856117 122856261 -20930194 - L2 LINE L2 -252 3020 2875 446 231 75 0 chr12 122856280 122856414 -20930041 + L1 LINE L1 5087 5230 -916 2103 124 0 0 chr12 122856416 122856707 -20929748 + AluSx SINE Alu 1 291 -21 1066 164 50 14 chr12 122856707 122856926 -20929529 + AluSg/x SINE Alu 77 303 -9 1686 160 13 3 chr12 122857490 122857796 -20928659 - AluY SINE Alu -2 309 1 349 78 0 20 chr12 122857796 122857847 -20928608 - AluJb SINE Alu -167 135 86 1332 171 0 9 chr12 122857847 122858069 -20928386 - AluJo SINE Alu -92 220 1 838 164 39 50 chr12 122858108 122858319 -20928136 - L1M3 LINE L1 -272 5911 5609 2209 94 7 0 chr12 122858319 122858618 -20927837 - AluSx SINE Alu -11 301 1 838 164 39 50 chr12 122858618 122858644 -20927811 - L1M3 LINE L1 -574 5609 5584 2114 167 52 131 chr12 122858670 122859121 -20927334 - L1MC4 LINE L1 -978 7064 6678 2112 105 0 0 chr12 122859121 122859406 -20927049 - AluSx SINE Alu -23 289 5 2114 167 52 131 chr12 122859406 122859605 -20926850 - L1MC4 LINE L1 -1364 6678 6465 2153 99 7 0 chr12 122859615 122859918 -20926537 - AluSp SINE Alu -8 305 1 21 0 0 0 chr12 122860690 122860711 -20925744 + AT_rich Low_complexity Low_complexity 1 21 0 796 143 23 23 chr12 122860719 122860852 -20925603 - FLAM_C SINE Alu 0 133 1 1753 157 7 17 chr12 122860852 122861145 -20925310 - AluJo SINE Alu -20 292 3 2183 108 0 0 chr12 122861483 122861778 -20924677 - AluSq SINE Alu -18 295 1 1996 142 0 3 chr12 122861778 122862080 -20924375 - AluSx SINE Alu -11 301 1 454 273 77 72 chr12 122862088 122862180 -20924275 - L1MC4a LINE L1 -1750 6058 5968 1919 149 6 19 chr12 122862180 122862495 -20923960 - AluSx SINE Alu -1 311 1 454 273 77 72 chr12 122862495 122862790 -20923665 - L1MC4a LINE L1 -1840 5968 5669 2303 81 3 0 chr12 122862856 122863164 -20923291 - AluSp SINE Alu -4 309 1 199 289 19 0 chr12 122863348 122863400 -20923055 - L2 LINE L2 -12 3301 3249 225 0 0 0 chr12 122863601 122863626 -20922829 + (T)n Simple_repeat Simple_repeat 1 25 0 2166 105 3 0 chr12 122863639 122863935 -20922520 + AluSx SINE Alu 1 297 -15 2005 131 0 7 chr12 122863946 122864244 -20922211 + AluSg SINE Alu 1 296 -14 1975 102 0 3 chr12 122864244 122864528 -20921927 + L1P LINE L1 2180 2462 -3684 623 85 0 0 chr12 122864618 122864700 -20921755 - AluJ/FRAM SINE Alu -14 298 217 999 158 15 4 chr12 122865111 122865371 -20921084 + (TA)n Simple_repeat Simple_repeat 1 264 0 765 211 88 48 chr12 122865371 122865598 -20920857 - L1MC4 LINE L1 -124 7918 7683 1967 116 17 0 chr12 122865759 122866053 -20920402 - AluSp SINE Alu -14 299 1 1912 147 0 3 chr12 122866053 122866353 -20920102 - AluJb SINE Alu -13 299 1 454 106 15 0 chr12 122866353 122866419 -20920036 - AluJb SINE Alu -175 137 71 274 167 0 56 chr12 122866522 122866576 -20919879 - AluS SINE Alu -244 59 9 1170 174 18 5 chr12 122866698 122866922 -20919533 + AluJb SINE Alu 71 297 -15 273 98 0 0 chr12 122866924 122866965 -20919490 + (CA)n Simple_repeat Simple_repeat 2 42 0 1997 80 28 7 chr12 122867210 122867498 -20918957 - AluSx SINE Alu -17 295 2 198 0 0 0 chr12 122867512 122867534 -20918921 + (A)n Simple_repeat Simple_repeat 1 22 0 261 0 0 0 chr12 122868525 122868554 -20917901 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 203 180 0 20 chr12 122869736 122869786 -20916669 + G-rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr12 122870545 122870566 -20915889 + (G)n Simple_repeat Simple_repeat 1 21 0 1900 99 0 55 chr12 122871314 122871606 -20914849 - AluSx SINE Alu -35 277 2 353 25 0 0 chr12 122871751 122871791 -20914664 + LTR23 LTR ERV1 320 359 -78 2385 160 28 48 chr12 122871878 122872377 -20914078 + L1MC2 LINE L1 5644 6132 -212 247 144 144 22 chr12 122872401 122872491 -20913964 + L1MC2 LINE L1 6112 6212 -132 192 77 0 0 chr12 122872492 122872518 -20913937 + (T)n Simple_repeat Simple_repeat 1 26 0 475 240 50 52 chr12 122872831 122873035 -20913420 + L1M4 LINE L1 5615 5820 -358 1573 185 0 22 chr12 122873039 122873352 -20913103 + AluJo SINE Alu 1 306 -6 1609 161 63 3 chr12 122873385 122873671 -20912784 + AluJo SINE Alu 1 303 -9 1874 104 0 0 chr12 122873698 122873948 -20912507 + AluSc SINE Alu 1 250 -59 313 185 0 0 chr12 122874104 122874158 -20912297 + MSTB LTR MaLR 3 56 -370 2039 114 3 3 chr12 122874158 122874448 -20912007 + AluSq SINE Alu 1 290 -23 1004 111 0 14 chr12 122874462 122874606 -20911849 + AluSq/x SINE Alu 3 144 -169 1795 147 7 7 chr12 122874609 122874902 -20911553 + AluSx SINE Alu 5 297 -15 621 188 17 26 chr12 122975232 122975349 -20811106 - MLT1E LTR MaLR -468 125 10 30 27 0 0 chr12 122975489 122975526 -20810929 + AT_rich Low_complexity Low_complexity 1 37 0 1834 100 0 0 chr12 122975598 122975828 -20810627 - AluSq SINE Alu -78 235 6 1745 193 87 5 chr12 122975832 122976210 -20810245 - L1MB5 LINE L1 -32 6142 5734 1884 164 3 0 chr12 122976213 122976530 -20809925 - AluSx SINE Alu 0 318 1 2074 127 0 13 chr12 122976533 122976841 -20809614 - AluSx SINE Alu -8 304 1 180 97 0 0 chr12 122977024 122977055 -20809400 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 659 253 104 56 chr12 122977056 122977325 -20809130 + MLT1I LTR MaLR 12 293 -116 231 103 0 0 chr12 122977533 122977572 -20808883 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 224 229 14 71 chr12 122977572 122977642 -20808813 - L2 LINE L2 -13 3300 3235 396 0 0 0 chr12 122978508 122978552 -20807903 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 187 430 0 8 chr12 122978573 122978701 -20807754 - MIR SINE MIR -111 151 25 195 184 0 0 chr12 122979362 122979400 -20807055 + (CA)n Simple_repeat Simple_repeat 2 39 0 2400 101 0 0 chr12 122979701 122980007 -20806448 + AluSx SINE Alu 1 306 -6 1014 183 6 11 chr12 122980037 122980212 -20806243 + AluJo SINE Alu 120 293 -19 1961 147 0 3 chr12 122980222 122980538 -20805917 + AluSg SINE Alu 1 315 0 302 219 0 71 chr12 122980851 122980950 -20805505 + AluJ/FRAM SINE Alu 227 302 0 252 80 40 40 chr12 122980966 122981016 -20805439 + L1MB4 LINE L1 6129 6178 -2 254 132 0 0 chr12 122981041 122981079 -20805376 + tRNA-Cys-TGC tRNA tRNA 37 74 -1 442 192 0 0 chr12 122981101 122981174 -20805281 - AluS SINE Alu -228 84 12 2432 97 0 0 chr12 122981292 122981603 -20804852 + AluY SINE Alu 1 311 0 1419 170 4 0 chr12 122982105 122982334 -20804121 + AluSx SINE Alu 1 230 -82 583 118 14 132 chr12 122982441 122982585 -20803870 - MLT1C LTR MaLR -340 127 1 2388 205 45 40 chr12 122982962 122983494 -20802961 + MLT1F LTR MaLR 7 541 -1 281 230 0 112 chr12 122983622 122983783 -20802672 + MIR SINE MIR 82 224 -38 1106 90 0 6 chr12 122983986 122984142 -20802313 + L1PA8 LINE L1 6018 6172 0 244 119 0 24 chr12 122986613 122986655 -20799800 - MER5A DNA MER1_type -83 106 66 642 193 0 0 chr12 122986795 122986914 -20799541 + FLAM_C SINE Alu 2 120 -23 770 239 6 11 chr12 122987486 122987666 -20798789 + MLT1B LTR MaLR 1 179 -211 815 152 0 8 chr12 122987666 122987791 -20798664 + FLAM_C SINE Alu 1 124 -19 1757 135 12 53 chr12 122987809 122988128 -20798327 + AluSx SINE Alu 1 306 -6 1703 195 34 0 chr12 122988620 122988917 -20797538 + AluJo SINE Alu 5 311 -1 422 255 0 0 chr12 122988949 122989043 -20797412 + MIR SINE MIR 59 152 -110 720 146 9 30 chr12 122989045 122989217 -20797238 - MSTD LTR MaLR 0 396 199 605 291 109 33 chr12 122989435 122989765 -20796690 - MLT1J LTR MaLR -153 358 4 246 273 164 47 chr12 122989789 122989917 -20796538 - L2 LINE L2 0 3313 3171 685 227 118 30 chr12 122989982 122990185 -20796270 - MER58A DNA MER1_type 0 224 4 603 204 0 9 chr12 122990358 122990466 -20795989 - AluJb SINE Alu -204 108 2 391 293 43 7 chr12 122990592 122990732 -20795723 + L2 LINE L2 3169 3313 0 234 266 51 38 chr12 122990763 122990842 -20795613 - MIR SINE MIR -75 133 54 441 273 37 37 chr12 122991354 122991515 -20794940 - L2 LINE L2 0 3313 3153 657 208 24 0 chr12 122992245 122992370 -20794085 - FLAM_C SINE Alu -5 128 1 404 237 35 18 chr12 122992744 122992858 -20793597 + FLAM_C SINE Alu 3 118 -25 227 125 0 0 chr12 122993197 122993237 -20793218 + L1MB5 LINE L1 6127 6166 -8 181 284 184 46 chr12 122993320 122993429 -20793026 - MIR SINE MIR -67 141 18 1341 159 11 22 chr12 122993639 122993916 -20792539 + AluSq SINE Alu 1 274 -39 1412 154 4 40 chr12 122994174 122994447 -20792008 - AluJo SINE Alu -9 303 41 372 276 124 46 chr12 122994672 122994889 -20791566 + MIR SINE MIR 29 262 0 270 190 13 25 chr12 122995067 122995146 -20791309 + GA-rich Low_complexity Low_complexity 1 78 0 557 322 80 7 chr12 122995146 122995435 -20791020 - L1ME4a LINE L1 -293 5828 5519 1059 202 15 11 chr12 122995485 122995757 -20790698 + AluSx SINE Alu 1 273 -39 358 171 0 29 chr12 122995966 122996036 -20790419 + AluSc SINE Alu 231 298 -1 1756 145 3 10 chr12 122996136 122996426 -20790029 + AluSx SINE Alu 1 288 -24 359 333 101 42 chr12 122997013 122997250 -20789205 - MIR SINE MIR -6 256 6 1903 149 3 0 chr12 122997470 122997765 -20788690 - AluJo SINE Alu -16 296 1 33 66 0 0 chr12 122997934 122997995 -20788460 + AT_rich Low_complexity Low_complexity 1 61 0 185 290 32 65 chr12 122998638 122998731 -20787724 + MIR SINE MIR 48 137 -71 1735 146 34 10 chr12 122998731 122999025 -20787430 + AluJb SINE Alu 1 301 -11 1772 140 4 15 chr12 122999026 122999298 -20787157 + AluSx SINE Alu 1 269 -43 893 133 7 0 chr12 122999298 122999433 -20787022 - AluSq/x SINE Alu -177 136 1 378 248 191 0 chr12 122999654 122999759 -20786696 - L2 LINE L2 0 3313 3189 246 368 63 0 chr12 122999800 122999895 -20786560 + L2 LINE L2 2874 2974 -298 218 311 49 33 chr12 123000017 123000139 -20786316 + L2 LINE L2 3147 3270 -2 851 193 136 41 chr12 123000726 123000969 -20785486 - AluJo SINE Alu -12 300 35 221 0 35 0 chr12 123000973 123001002 -20785453 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 242 303 0 0 chr12 123001164 123001230 -20785225 - Charlie8 DNA MER1_type 0 2417 2352 451 292 0 8 chr12 123001233 123001363 -20785092 - LTR33 LTR ERVL 0 521 393 1842 158 0 13 chr12 123001385 123001696 -20784759 + AluSx SINE Alu 2 308 -4 707 238 163 13 chr12 123001710 123001937 -20784518 - L2 LINE L2 -197 3116 2856 648 182 0 0 chr12 123001939 123002038 -20784417 + AluJ/FLAM SINE Alu 4 102 -210 286 213 93 0 chr12 123002484 123002559 -20783896 - Charlie8 DNA MER1_type -1942 475 394 262 239 0 192 chr12 123002563 123002730 -20783725 + MIR SINE MIR 112 246 -16 409 98 0 61 chr12 123002764 123002846 -20783609 - MADE1 DNA Mariner 0 80 4 2043 132 0 0 chr12 123002882 123003193 -20783262 - AluSx SINE Alu -1 311 1 1358 214 20 31 chr12 123003227 123003521 -20782934 - AluJo SINE Alu -7 295 5 667 171 0 0 chr12 123003561 123003666 -20782789 - FLAM_C SINE Alu -18 125 21 883 244 21 72 chr12 123003750 123004029 -20782426 - Charlie8 DNA MER1_type -2141 276 12 246 173 27 47 chr12 123004989 123005139 -20781316 + (TCTG)n Simple_repeat Simple_repeat 4 150 0 200 263 100 12 chr12 123005207 123005287 -20781168 - MIR SINE MIR -59 203 117 428 274 57 32 chr12 123005301 123005458 -20780997 - L2 LINE L2 0 3313 3153 729 154 23 46 chr12 123006212 123006342 -20780113 - FLAM_C SINE Alu -14 129 3 302 338 108 7 chr12 123006344 123006483 -20779972 - MIR SINE MIR -96 166 14 717 199 15 0 chr12 123006714 123006845 -20779610 + FLAM_C SINE Alu 1 133 0 268 280 224 56 chr12 123007129 123007254 -20779201 + L3 LINE CR1 1425 1570 -7 1989 133 0 3 chr12 123007341 123007641 -20778814 + AluSx SINE Alu 2 300 -12 831 261 19 9 chr12 123007778 123007993 -20778462 + MIR SINE MIR 46 262 0 1912 152 0 0 chr12 123008678 123008980 -20777475 - AluSx SINE Alu -10 302 1 761 137 8 23 chr12 123009563 123009694 -20776761 - AluJo SINE Alu -163 149 21 799 205 48 52 chr12 123009790 123010058 -20776397 - L1ME3A LINE L1 -3 6167 5901 1680 148 3 34 chr12 123010513 123010811 -20775644 - AluJb SINE Alu -23 289 1 1295 241 39 49 chr12 123010963 123011374 -20775081 - L1ME3A LINE L1 -266 5904 5498 1770 220 35 61 chr12 123011388 123011757 -20774698 + MER21B LTR ERV1 12 425 -438 2727 110 0 0 chr12 123011757 123012121 -20774334 - THE1B LTR MaLR 0 364 1 1770 220 35 61 chr12 123012121 123012323 -20774132 + MER21B LTR ERV1 425 631 -232 623 262 33 11 chr12 123012460 123012643 -20773812 + MER21B LTR ERV1 616 802 -61 481 334 128 53 chr12 123012718 123013114 -20773341 + L2 LINE L2 2635 3095 -177 782 262 94 0 chr12 123013114 123013316 -20773139 + MER58A DNA MER1_type 4 224 0 481 334 128 53 chr12 123013316 123013509 -20772946 + L2 LINE L2 3095 3272 0 641 304 98 44 chr12 123013533 123013941 -20772514 + MLT1J LTR MaLR 4 433 -78 222 241 52 35 chr12 123014349 123014407 -20772048 - L2 LINE L2 -1 3271 3213 226 153 34 0 chr12 123014474 123014533 -20771922 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 356 290 20 10 chr12 123014614 123014701 -20771754 + MER58B DNA MER1_type 1 91 -250 210 37 0 0 chr12 123014701 123014728 -20771727 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 356 290 20 10 chr12 123014728 123014740 -20771715 + MER58B DNA MER1_type 91 101 -240 2699 132 57 2 chr12 123014741 123015181 -20771274 - L1PA13 LINE L1 -25 6138 5675 1522 186 0 4 chr12 123015183 123015447 -20771008 + MER58B DNA MER1_type 77 339 -2 292 287 140 7 chr12 123016685 123016835 -20769620 - L1ME LINE L1 -393 5728 5559 821 130 0 0 chr12 123016858 123016981 -20769474 + L1PA16 LINE L1 6035 6157 -9 1507 147 72 20 chr12 123017082 123017375 -20769080 - AluSg SINE Alu 0 310 3 24 0 0 0 chr12 123017384 123017408 -20769047 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr12 123017434 123017458 -20768997 + AT_rich Low_complexity Low_complexity 1 24 0 2915 212 49 28 chr12 123017475 123018065 -20768390 - L1ME1 LINE L1 -23 6143 5534 2136 170 10 10 chr12 123018065 123018453 -20768002 - MLT1B LTR MaLR 0 390 3 2915 212 49 28 chr12 123018453 123018573 -20767882 - L1ME1 LINE L1 -632 5534 5418 851 267 36 54 chr12 123019853 123020187 -20766268 - MLT1G3 LTR MaLR -244 351 1 205 338 102 32 chr12 123020403 123020560 -20765895 + MER5B DNA MER1_type 8 175 -3 * 232 359 70 19 chr12 123020421 123020577 -20765878 - MER5A DNA MER1_type -25 164 1 282 277 0 92 chr12 123020621 123020740 -20765715 - MIR SINE MIR -63 145 37 916 213 6 0 chr12 123021123 123021292 -20765163 - MER45A DNA AcHobo -8 170 1 2115 117 10 3 chr12 123021425 123021734 -20764721 + AluSx SINE Alu 1 311 -1 186 143 0 0 chr12 123022550 123022585 -20763870 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 402 316 72 21 chr12 123022730 123022923 -20763532 - MIR SINE MIR -32 230 28 337 247 13 13 chr12 123022982 123023059 -20763396 - L2 LINE L2 0 3313 3237 717 146 8 16 chr12 123023120 123023243 -20763212 - AluJ SINE Alu -14 298 177 * 732 149 0 0 chr12 123023236 123023343 -20763112 - AluJ SINE Alu -186 126 20 195 408 0 13 chr12 123023427 123023503 -20762952 + L2 LINE L2 3111 3185 -87 457 272 91 61 chr12 123023774 123024182 -20762273 + MLT1K LTR MaLR 169 588 0 5172 31 2 11 chr12 123024362 123024995 -20761460 + L1PA5 LINE L1 5535 6161 0 215 338 0 25 chr12 123025007 123025087 -20761368 + MIR SINE MIR 34 111 -97 2193 111 0 0 chr12 123025097 123025404 -20761051 - AluSx SINE Alu -5 307 1 561 344 82 57 chr12 123025541 123025995 -20760460 - L2 LINE L2 -1 3271 2807 400 347 16 0 chr12 123026159 123026280 -20760175 - MIR SINE MIR -56 152 30 1719 118 0 0 chr12 123027424 123027669 -20758786 - AluSx SINE Alu -5 307 63 364 148 0 0 chr12 123027712 123027766 -20758689 - AluSx SINE Alu -242 57 4 257 239 30 0 chr12 123027910 123027977 -20758478 + MIR SINE MIR 82 150 -112 194 311 175 0 chr12 123028496 123028599 -20757856 - MIR3 SINE MIR -51 157 37 892 258 36 13 chr12 123028686 123028911 -20757544 + MIR SINE MIR 8 237 -25 25 51 0 0 chr12 123028961 123029000 -20757455 + AT_rich Low_complexity Low_complexity 1 39 0 1512 107 56 183 chr12 123029162 123029573 -20756882 - Tigger2 DNA MER2_type 0 2718 2257 180 0 0 0 chr12 123029573 123029593 -20756862 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1512 107 56 183 chr12 123029593 123029686 -20756769 - Tigger2 DNA MER2_type -461 2257 1 404 279 0 0 chr12 123029741 123029844 -20756611 - MIR SINE MIR -61 147 61 441 287 9 0 chr12 123029863 123029978 -20756477 - MER103 DNA DNA -45 121 6 1772 157 0 13 chr12 123030022 123030322 -20756133 + AluSx SINE Alu 1 296 -16 239 95 0 0 chr12 123030358 123030400 -20756055 + LTR66 LTR ERVL 398 439 -171 378 61 0 0 chr12 123030400 123030449 -20756006 + (TA)n Simple_repeat Simple_repeat 2 50 0 215 302 16 0 chr12 123030519 123030582 -20755873 - MER5A DNA MER1_type -3 186 123 764 154 8 0 chr12 123030582 123030699 -20755756 + FLAM_C SINE Alu 2 119 -24 21 0 0 0 chr12 123030745 123030766 -20755689 + AT_rich Low_complexity Low_complexity 1 21 0 274 260 0 26 chr12 123030778 123030855 -20755600 - MER5A DNA MER1_type -89 100 26 1169 72 0 0 chr12 123031046 123031199 -20755256 + AluY SINE Alu 148 300 -11 1784 153 0 23 chr12 123031362 123031670 -20754785 - AluJo SINE Alu -11 301 1 231 179 54 18 chr12 123032007 123032063 -20754392 + T-rich Low_complexity Low_complexity 3 60 0 2280 97 0 0 chr12 123032594 123032902 -20753553 - AluSx SINE Alu -4 308 1 281 309 41 41 chr12 123033023 123033146 -20753309 + MIR SINE MIR 23 145 -63 1876 154 0 3 chr12 123033846 123034188 -20752267 - AluSx SINE Alu 0 312 1 573 318 80 7 chr12 123034238 123034527 -20751928 + L1ME4a LINE L1 5519 5828 -293 285 179 21 32 chr12 123034528 123034623 -20751832 + CT-rich Low_complexity Low_complexity 4 97 0 680 175 18 6 chr12 123034650 123034821 -20751634 + CT-rich Low_complexity Low_complexity 2 174 0 183 208 104 0 chr12 123034821 123034869 -20751586 - L2 LINE L2 0 3272 3220 439 273 73 69 chr12 123034888 123035148 -20751307 + L1ME4a LINE L1 5830 6090 -31 1080 304 90 27 chr12 123035178 123035658 -20750797 + L2 LINE L2 2804 3313 0 386 306 33 43 chr12 123035909 123036097 -20750358 + MIR SINE MIR 16 199 -59 2127 102 13 0 chr12 123036166 123036470 -20749985 - AluSg SINE Alu -2 308 1 1612 145 48 28 chr12 123036543 123036833 -20749622 - AluJo SINE Alu -16 296 1 260 262 202 0 chr12 123036894 123036978 -20749477 - MIR SINE MIR -113 149 49 3628 157 60 96 chr12 123037401 123037439 -20749016 - L1MB5 LINE L1 0 6174 6136 276 30 0 0 chr12 123037439 123037472 -20748983 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1838 113 23 0 chr12 123037480 123037745 -20748710 - AluSx SINE Alu -36 276 6 3628 157 60 96 chr12 123037745 123038129 -20748326 - L1MB5 LINE L1 -45 6129 5733 1661 169 3 3 chr12 123038129 123038443 -20748012 - AluJb SINE Alu 0 314 1 3628 157 60 96 chr12 123038443 123038930 -20747525 - L1MB5 LINE L1 -441 5733 5287 390 42 0 0 chr12 123039045 123039093 -20747362 + (TC)n Simple_repeat Simple_repeat 1 48 0 880 191 0 0 chr12 123039094 123039246 -20747209 - FRAM SINE Alu -28 148 1 301 318 37 9 chr12 123040044 123040151 -20746304 + MIR SINE MIR 82 191 -71 192 379 32 21 chr12 123040146 123040241 -20746214 - MIR SINE MIR 0 262 167 * 32 0 0 0 chr12 123040254 123040286 -20746169 + AT_rich Low_complexity Low_complexity 1 32 0 850 125 0 0 chr12 123040287 123040407 -20746048 - FLAM_C SINE Alu -21 122 3 311 221 29 100 chr12 123040427 123040567 -20745888 - MIR3 SINE MIR -66 142 13 185 354 37 0 chr12 123041457 123041539 -20744916 - MIR SINE MIR -119 143 59 1876 136 3 37 chr12 123041646 123041941 -20744514 - AluSx SINE Alu -16 296 12 1699 182 10 14 chr12 123041949 123042246 -20744209 - AluJo SINE Alu -16 296 1 215 289 87 19 chr12 123042318 123042422 -20744033 - MIR SINE MIR -75 187 77 663 271 164 15 chr12 123042469 123042798 -20743657 - MER113 DNA MER1_type? -2 519 142 654 13 0 0 chr12 123042804 123042879 -20743576 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 2312 114 16 0 chr12 123042896 123043203 -20743252 - AluSx SINE Alu 0 312 1 775 157 8 0 chr12 123043272 123043393 -20743062 - Tigger1 DNA MER2_type 0 2418 2297 452 100 0 0 chr12 123043438 123043498 -20742957 + L1PA13 LINE L1 5909 5968 -195 1240 164 9 14 chr12 123043797 123044016 -20742439 + MER20 DNA MER1_type 1 218 -1 2007 152 3 0 chr12 123044396 123044692 -20741763 - AluJb SINE Alu -14 298 2 346 301 45 15 chr12 123044825 123044958 -20741497 + L2 LINE L2 3136 3272 0 216 286 0 0 chr12 123044989 123045045 -20741410 - MIR SINE MIR -130 132 77 279 302 50 29 chr12 123045294 123045433 -20741022 + MIR SINE MIR 110 251 -11 405 0 0 0 chr12 123046208 123046253 -20740202 + (CA)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr12 123046340 123046373 -20740082 + (CA)n Simple_repeat Simple_repeat 1 33 0 503 268 93 8 chr12 123046911 123047266 -20739189 - L1ME4a LINE L1 -11 6110 5673 345 274 149 24 chr12 123047451 123047619 -20738836 - MIR SINE MIR -1 261 73 293 308 115 39 chr12 123047673 123047907 -20738548 - L2 LINE L2 -556 2758 2507 198 422 0 8 chr12 123048515 123048643 -20737812 + MIR SINE MIR 25 151 -111 423 0 0 0 chr12 123048665 123048712 -20737743 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 328 288 104 31 chr12 123048902 123049124 -20737331 - MIR SINE MIR -5 257 20 1922 116 0 93 chr12 123049519 123049863 -20736592 + AluSx SINE Alu 1 312 0 412 246 8 25 chr12 123049866 123049988 -20736467 + L2 LINE L2 3192 3311 -2 301 333 23 0 chr12 123049996 123050125 -20736330 + MIR SINE MIR 131 262 0 235 325 33 25 chr12 123052621 123052741 -20733714 - L2 LINE L2 -4 3268 3148 291 269 0 82 chr12 123053254 123053377 -20733078 - MIR SINE MIR -75 133 20 1439 264 129 19 chr12 123053931 123054396 -20732059 + MLT1G1 LTR MaLR 80 595 0 840 267 42 0 chr12 123054659 123054899 -20731556 - MIR SINE MIR -12 250 1 416 284 54 27 chr12 123055044 123055192 -20731263 - MIR SINE MIR -35 227 76 21 0 0 0 chr12 123056202 123056223 -20730232 + AT_rich Low_complexity Low_complexity 1 21 0 873 225 41 5 chr12 123056525 123056743 -20729712 + MIR SINE MIR 37 262 0 1298 25 0 13 chr12 123057932 123058090 -20728365 - L1PA8 LINE L1 0 6172 6017 481 227 138 36 chr12 123058442 123058689 -20727766 + L2 LINE L2 2900 3171 -142 254 233 0 17 chr12 123059306 123059366 -20727089 + CT-rich Low_complexity Low_complexity 3 61 0 255 218 0 0 chr12 123059508 123059609 -20726846 + (TG)n Simple_repeat Simple_repeat 1 101 0 360 309 6 17 chr12 123059634 123059812 -20726643 + (TG)n Simple_repeat Simple_repeat 1 176 0 279 254 0 0 chr12 123059866 123059988 -20726467 + (TG)n Simple_repeat Simple_repeat 2 123 0 287 309 6 22 chr12 123060002 123060183 -20726272 + (TG)n Simple_repeat Simple_repeat 1 178 0 430 242 0 38 chr12 123060267 123060632 -20725823 + (TG)n Simple_repeat Simple_repeat 1 351 0 180 253 154 11 chr12 123061652 123061743 -20724712 + MIR SINE MIR 123 226 -36 2631 144 19 7 chr12 123062345 123062775 -20723680 - L1MC3 LINE L1 0 7785 7351 251 263 18 0 chr12 123062783 123062840 -20723615 - L2 LINE L2 -82 3190 3133 222 298 0 0 chr12 123063428 123063485 -20722970 + MIR SINE MIR 97 153 -109 2044 132 24 34 chr12 123063585 123063963 -20722492 + THE1C LTR MaLR 1 374 -1 357 215 11 11 chr12 123063965 123064058 -20722397 + L2 LINE L2 3180 3272 0 272 232 10 0 chr12 123064077 123064176 -20722279 + (TGGA)n Simple_repeat Simple_repeat 3 102 0 430 270 29 22 chr12 123065051 123065188 -20721267 + MIR SINE MIR 79 216 -46 195 360 100 0 chr12 123065417 123065567 -20720888 + L2 LINE L2 2593 2757 -557 291 177 24 40 chr12 123065653 123065777 -20720678 + CT-rich Low_complexity Low_complexity 5 126 0 222 37 0 0 chr12 123066226 123066253 -20720202 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2148 97 14 0 chr12 123066256 123066534 -20719921 - AluSx SINE Alu -30 282 1 250 289 94 39 chr12 123066540 123066668 -20719787 + L2 LINE L2 3178 3312 -1 186 279 162 0 chr12 123067090 123067158 -20719297 + MIR SINE MIR 54 132 -76 980 242 26 0 chr12 123067175 123067369 -20719086 + MER58A DNA MER1_type 26 224 0 397 314 19 0 chr12 123067474 123067633 -20718822 - MER113 DNA MER1_type? -18 503 342 282 242 15 0 chr12 123067722 123067788 -20718667 + MER46C DNA MER2_type 3 69 -269 5365 136 37 48 chr12 123067853 123068014 -20718441 + L1MA6 LINE L1 5137 5298 -1002 194 62 31 0 chr12 123068014 123068046 -20718409 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5365 136 37 48 chr12 123068046 123068097 -20718358 + L1MA6 LINE L1 5298 5348 -952 1706 68 0 0 chr12 123068097 123068303 -20718152 + L1PA5 LINE L1 5932 6151 -3 5365 136 37 48 chr12 123068303 123069219 -20717236 + L1MA6 LINE L1 5348 6283 -17 497 185 22 0 chr12 123069355 123069447 -20717008 + MER46C DNA MER2_type 243 336 -2 269 225 42 58 chr12 123069486 123069606 -20716849 - MER113 DNA MER1_type? -398 123 6 291 280 37 19 chr12 123070689 123070796 -20715659 + MIR SINE MIR 36 144 -64 198 196 0 22 chr12 123070810 123070856 -20715599 - MIR SINE MIR -20 242 198 748 169 0 42 chr12 123070878 123071020 -20715435 - FLAM_C SINE Alu -7 136 1 238 329 0 0 chr12 123071070 123071149 -20715306 - MIR SINE MIR -25 237 159 656 301 58 32 chr12 123071151 123071463 -20714992 - LTR16C LTR ERVL -3 488 169 214 330 0 62 chr12 123071621 123071733 -20714722 - MIR SINE MIR -132 130 26 214 362 74 0 chr12 123071758 123071872 -20714583 - MIR SINE MIR -64 144 52 265 294 21 56 chr12 123072780 123072923 -20713532 + MIR3 SINE MIR 45 182 -26 1557 182 34 89 chr12 123072933 123073427 -20713028 - MLT1C LTR MaLR 0 467 1 2383 204 43 39 chr12 123073799 123074338 -20712117 + MLT1F LTR MaLR 1 541 -1 203 250 0 0 chr12 123074358 123074406 -20712049 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 543 256 6 36 chr12 123074448 123074616 -20711839 + MIR SINE MIR 66 228 -34 368 283 134 32 chr12 123075050 123075237 -20711218 + MIR SINE MIR 57 262 0 250 182 0 0 chr12 123076736 123076780 -20709675 + MER5A DNA MER1_type 9 52 -137 382 310 0 0 chr12 123077447 123077602 -20708853 + G-rich Low_complexity Low_complexity 1 155 0 30 51 0 0 chr12 123077602 123077641 -20708814 + GC_rich Low_complexity Low_complexity 1 39 0 571 227 0 0 chr12 123077641 123077782 -20708673 + G-rich Low_complexity Low_complexity 1 141 0 201 338 0 0 chr12 123078092 123078163 -20708292 - L2 LINE L2 0 3313 3243 642 266 71 0 chr12 123078168 123078352 -20708103 - LTR33A LTR ERVL 0 523 327 400 266 91 42 chr12 123078469 123078612 -20707843 - LTR33A LTR ERVL -371 152 3 645 303 48 24 chr12 123078945 123079196 -20707259 - MIR SINE MIR -4 258 2 675 295 123 33 chr12 123079353 123079712 -20706743 - MLT1J LTR MaLR -116 395 5 2253 105 0 0 chr12 123080207 123080503 -20705952 - AluY SINE Alu -15 296 1 313 307 67 7 chr12 123081547 123081697 -20704758 - MIR SINE MIR -10 252 94 1206 163 5 5 chr12 123081757 123081966 -20704489 - L1MB1 LINE L1 0 6168 5960 642 127 15 75 chr12 123081970 123082104 -20704351 - MSTB LTR MaLR -300 126 1 217 269 0 0 chr12 123082173 123082225 -20704230 + MIR SINE MIR 48 99 -163 191 222 0 0 chr12 123082462 123082498 -20703957 + L2 LINE L2 3181 3216 -97 1569 225 91 56 chr12 123082527 123083078 -20703377 + MLT1F1 LTR MaLR 1 567 0 293 275 167 0 chr12 123083175 123083313 -20703142 - MIR SINE MIR -2 260 100 365 329 20 34 chr12 123083399 123083545 -20702910 - MIR3 SINE MIR -49 159 16 227 281 0 0 chr12 123084130 123084187 -20702268 + L2 LINE L2 3184 3240 -32 2339 194 42 40 chr12 123084528 123085075 -20701380 - L1MA10 LINE L1 -2 6332 5785 204 217 0 0 chr12 123085084 123085130 -20701325 + (TA)n Simple_repeat Simple_repeat 1 46 0 1927 149 17 0 chr12 123085156 123085445 -20701010 + AluSx SINE Alu 1 294 -18 479 189 27 0 chr12 123085453 123085564 -20700891 + L1MA8 LINE L1 6158 6271 -20 1808 164 13 0 chr12 123085564 123085868 -20700587 - L1MA10 LINE L1 -507 5784 5477 751 162 54 14 chr12 123085868 123086016 -20700439 - MSTB LTR MaLR -48 378 225 4653 156 18 27 chr12 123086448 123086657 -20699798 - L1MA10 LINE L1 -698 5470 5261 2495 73 0 6 chr12 123086657 123086970 -20699485 + AluY SINE Alu 1 311 0 4653 156 18 27 chr12 123086970 123087839 -20698616 - L1MA10 LINE L1 -907 5261 4450 2235 112 0 0 chr12 123087944 123088231 -20698224 + AluSx SINE Alu 6 292 -20 285 263 34 42 chr12 123088380 123088498 -20697957 - MLT1K LTR MaLR -2 586 470 201 292 0 0 chr12 123088524 123088589 -20697866 + CT-rich Low_complexity Low_complexity 1 65 0 2502 85 0 0 chr12 123088866 123089173 -20697282 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr12 123089512 123089537 -20696918 + AT_rich Low_complexity Low_complexity 1 25 0 478 57 0 0 chr12 123090633 123090703 -20695752 + Alu SINE Alu 243 312 0 239 320 22 25 chr12 123091319 123091518 -20694937 - MIR SINE MIR -13 249 52 253 289 0 0 chr12 123091600 123091676 -20694779 - MIR SINE MIR -135 127 52 1069 184 51 42 chr12 123091955 123092172 -20694283 - MER20 DNA MER1_type 0 219 1 401 165 0 4 chr12 123093774 123093908 -20692547 - MER53 DNA DNA -3 186 5 684 286 0 0 chr12 123094606 123094784 -20691671 + MER5B DNA MER1_type 1 178 0 1887 120 34 80 chr12 123095830 123096156 -20690299 - AluSx SINE Alu -1 311 1 228 203 34 0 chr12 123096159 123096218 -20690237 - MER116 DNA Mariner -19 61 1 2454 196 77 12 chr12 123096268 123096774 -20689681 - MLT1F LTR MaLR 0 542 4 428 329 91 0 chr12 123097221 123097440 -20689015 - MIR SINE MIR -13 249 11 2329 173 34 10 chr12 123097490 123097906 -20688549 - MSTB LTR MaLR 0 426 1 1070 273 15 0 chr12 123097968 123098232 -20688223 - LTR16A LTR ERVL -2 448 181 231 317 25 8 chr12 123098698 123098818 -20687637 + (CA)n Simple_repeat Simple_repeat 2 123 0 188 35 35 0 chr12 123099147 123099176 -20687279 + (CA)n Simple_repeat Simple_repeat 2 31 0 33 0 0 0 chr12 123101666 123101699 -20684756 + AT_rich Low_complexity Low_complexity 1 33 0 213 39 0 0 chr12 123101980 123102006 -20684449 + (TTA)n Simple_repeat Simple_repeat 1 26 0 321 231 106 0 chr12 123102158 123102262 -20684193 - MIR SINE MIR -61 147 33 2165 131 0 0 chr12 123102496 123102802 -20683653 + AluSx SINE Alu 1 306 -6 201 169 23 54 chr12 123102852 123102982 -20683473 + (TG)n Simple_repeat Simple_repeat 2 127 0 275 282 49 12 chr12 123103040 123103203 -20683252 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 261 189 33 0 chr12 123103203 123103293 -20683162 + (TG)n Simple_repeat Simple_repeat 2 94 0 380 208 21 35 chr12 123103307 123103451 -20683004 + (TG)n Simple_repeat Simple_repeat 1 142 0 1618 80 0 0 chr12 123103538 123103738 -20682717 + AluSg1 SINE Alu 1 200 -109 279 416 40 0 chr12 123104766 123104891 -20681564 - L2 LINE L2 -7 3265 3136 339 25 0 0 chr12 123105260 123105300 -20681155 + (TG)n Simple_repeat Simple_repeat 2 41 0 213 39 0 0 chr12 123106281 123106307 -20680148 + (ATG)n Simple_repeat Simple_repeat 3 28 0 658 182 55 0 chr12 123106308 123106418 -20680037 - FLAM_A SINE Alu -16 117 2 1973 196 6 6 chr12 123106540 123106893 -20679562 + MLT1A1 LTR MaLR 1 353 -12 377 293 46 111 chr12 123107074 123107425 -20679030 + L2 LINE L2 2939 3266 -6 180 213 21 0 chr12 123108399 123108446 -20678009 + L2 LINE L2 3265 3312 -1 220 214 0 0 chr12 123108701 123108743 -20677712 + (CTATA)n Simple_repeat Simple_repeat 4 45 0 1915 139 56 0 chr12 123108753 123109040 -20677415 - AluSx SINE Alu -5 307 5 232 244 49 37 chr12 123109691 123109773 -20676682 + MIR SINE MIR 104 186 -76 27 49 0 0 chr12 123109904 123109945 -20676510 + AT_rich Low_complexity Low_complexity 1 41 0 1855 162 0 25 chr12 123109945 123110259 -20676196 - AluJb SINE Alu -3 309 4 758 124 0 47 chr12 123110263 123110392 -20676063 - FLAM_C SINE Alu -10 133 11 195 294 109 25 chr12 123110417 123110536 -20675919 + MIR SINE MIR 94 222 -40 1756 157 71 0 chr12 123111140 123111420 -20675035 + AluJo SINE Alu 1 300 -12 248 313 126 20 chr12 123111646 123111892 -20674563 - L2 LINE L2 -340 2974 2703 472 242 38 25 chr12 123111916 123112073 -20674382 - LTR16C LTR ERVL -28 463 305 355 116 0 0 chr12 123112098 123112154 -20674301 + MLT2D LTR ERVL 366 414 0 592 184 61 18 chr12 123112543 123112706 -20673749 - L1ME4a LINE L1 0 6121 5952 25 83 0 0 chr12 123112706 123112766 -20673689 + AT_rich Low_complexity Low_complexity 1 60 0 751 149 15 22 chr12 123112886 123113020 -20673435 - FLAM_C SINE Alu 0 133 1 1209 195 133 24 chr12 123113085 123113424 -20673031 - L1MC4a LINE L1 -1878 5930 5555 315 122 0 0 chr12 123113447 123113488 -20672967 + Alu SINE Alu 1 41 -261 1487 239 86 50 chr12 123113557 123113976 -20672479 + MLT1K LTR MaLR 151 584 -4 493 156 0 0 chr12 123114163 123114269 -20672186 - AluSg/x SINE Alu 0 311 206 443 211 55 28 chr12 123114269 123114378 -20672077 - MIR SINE MIR -119 143 32 213 39 0 0 chr12 123115040 123115066 -20671389 + (A)n Simple_repeat Simple_repeat 1 26 0 319 280 133 14 chr12 123115416 123115523 -20670932 + MIR3 SINE MIR 37 160 -48 312 276 38 87 chr12 123115523 123115708 -20670747 + MER5B DNA MER1_type 1 176 -2 537 269 81 20 chr12 123116159 123116356 -20670099 - MIR SINE MIR -10 252 44 306 255 43 21 chr12 123116952 123117046 -20669409 + MIR3 SINE MIR 113 208 0 205 182 52 91 chr12 123117042 123117119 -20669336 - L2 LINE L2 0 3272 3199 * 374 335 12 12 chr12 123117291 123117458 -20668997 + MER5A DNA MER1_type 7 173 -16 230 271 0 0 chr12 123117607 123117666 -20668789 + (TA)n Simple_repeat Simple_repeat 2 60 0 421 282 0 9 chr12 123117731 123117841 -20668614 - MIR SINE MIR -128 134 26 1930 263 87 15 chr12 123118202 123118374 -20668081 - MLT1H1 LTR MaLR 0 555 397 1155 227 18 0 chr12 123118374 123118594 -20667861 + MER58A DNA MER1_type 1 224 0 1930 263 87 15 chr12 123118594 123118939 -20667516 - MLT1H1 LTR MaLR -158 397 1 398 263 36 29 chr12 123119052 123119189 -20667266 - L2 LINE L2 -3 3310 3173 4946 189 40 18 chr12 123120153 123121357 -20665098 - L1MA10 LINE L1 -3 6331 5104 207 269 115 0 chr12 123121486 123121564 -20664891 + MIR SINE MIR 110 196 -66 484 271 20 20 chr12 123121594 123121745 -20664710 - MIR SINE MIR -92 170 20 180 0 0 0 chr12 123121925 123121945 -20664510 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2362 88 7 7 chr12 123122700 123123005 -20663450 + AluSx SINE Alu 3 307 -5 504 218 111 34 chr12 123123079 123123257 -20663198 + MIR SINE MIR 33 224 -38 332 319 80 12 chr12 123124450 123124613 -20661842 - MLT1J LTR MaLR -238 273 100 2441 68 0 0 chr12 123124654 123124946 -20661509 + AluY SINE Alu 1 292 -19 1821 173 3 6 chr12 123125277 123125590 -20660865 + AluJo SINE Alu 1 312 0 198 103 0 0 chr12 123125601 123125630 -20660825 + (TAA)n Simple_repeat Simple_repeat 1 29 0 462 286 99 0 chr12 123125639 123125821 -20660634 - MIR SINE MIR -13 249 50 427 298 152 36 chr12 123126555 123126891 -20659564 + MLT1J2 LTR MaLR 63 440 -9 2135 105 34 3 chr12 123127024 123127319 -20659136 + AluSc SINE Alu 1 304 -5 739 154 8 0 chr12 123127332 123127449 -20659006 + L1ME LINE L1 5473 5590 -576 874 237 30 20 chr12 123127449 123127647 -20658808 - MLT1E LTR MaLR -384 209 10 30 27 0 0 chr12 123127787 123127824 -20658631 + AT_rich Low_complexity Low_complexity 1 37 0 1905 89 0 0 chr12 123127896 123128131 -20658324 - AluSq SINE Alu -78 235 1 180 97 0 0 chr12 123128313 123128344 -20658111 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 1031 274 50 50 chr12 123128345 123128743 -20657712 + MLT1I LTR MaLR 12 409 0 2099 113 0 0 chr12 123128966 123129303 -20657152 - AluSx SINE Alu 0 337 1 2550 58 0 16 chr12 123130743 123131054 -20655401 - AluY SINE Alu -5 306 1 2906 186 54 8 chr12 123131754 123132351 -20654104 + L1MB8 LINE L1 5554 6177 -1 444 236 47 16 chr12 123133229 123133356 -20653099 + LTR33 LTR ERVL 9 139 -382 457 184 0 132 chr12 123133527 123133663 -20652792 - MER103 DNA DNA -45 121 4 190 359 0 13 chr12 123133798 123133876 -20652579 - MIR SINE MIR -140 122 46 258 326 12 12 chr12 123135054 123135140 -20651315 - L2 LINE L2 0 3313 3228 382 281 18 26 chr12 123135214 123135328 -20651127 - MIR3 SINE MIR -21 187 75 429 289 14 97 chr12 123135551 123135796 -20650659 + MIR SINE MIR 19 241 -21 407 292 9 0 chr12 123136488 123136601 -20649854 + L2 LINE L2 3150 3263 -9 3395 106 29 12 chr12 123136638 123137128 -20649327 - L1PA16 LINE L1 -9 6157 5660 3879 120 79 26 chr12 123137309 123137348 -20649107 + L1MA5A LINE L1 5555 5591 -706 2214 125 36 25 chr12 123137348 123137708 -20648747 - THE1B LTR MaLR 0 364 1 3879 120 79 26 chr12 123137708 123138352 -20648103 + L1MA5A LINE L1 5591 6274 -23 2099 132 3 6 chr12 123138507 123138818 -20647637 - AluSx SINE Alu -2 310 1 564 314 100 49 chr12 123138875 123139327 -20647128 - L2 LINE L2 0 3313 2839 21 57 0 0 chr12 123140979 123141014 -20645441 + AT_rich Low_complexity Low_complexity 1 35 0 1886 167 28 0 chr12 123141373 123141661 -20644794 + AluSx SINE Alu 1 296 -16 553 223 137 24 chr12 123141737 123142093 -20644362 - MLT1J LTR MaLR -55 456 27 298 315 86 43 chr12 123142131 123142293 -20644162 + MIR SINE MIR 16 184 -78 226 357 56 8 chr12 123142454 123142580 -20643875 + L2 LINE L2 3182 3313 0 515 289 64 28 chr12 123142639 123142857 -20643598 - MIR SINE MIR -29 233 8 338 213 11 0 chr12 123143001 123143095 -20643360 + CT-rich Low_complexity Low_complexity 3 97 0 200 281 49 49 chr12 123143260 123143342 -20643113 - MIR3 SINE MIR -36 172 91 2267 112 3 16 chr12 123143368 123143681 -20642774 + AluSx SINE Alu 3 311 -1 539 271 57 52 chr12 123144481 123144691 -20641764 - Charlie8 DNA MER1_type -2153 264 54 240 246 0 16 chr12 123145052 123145113 -20641342 - MLT1L LTR MaLR -2 613 554 422 236 29 11 chr12 123145139 123145313 -20641142 + CT-rich Low_complexity Low_complexity 3 179 0 229 261 0 0 chr12 123145314 123145360 -20641095 + polypyrimidine Low_complexity Low_complexity 3 48 0 527 187 7 32 chr12 123145361 123145655 -20640800 + CT-rich Low_complexity Low_complexity 1 286 0 221 253 11 0 chr12 123145687 123145774 -20640681 + CT-rich Low_complexity Low_complexity 2 89 0 1195 106 0 0 chr12 123146898 123147070 -20639385 - AluY SINE Alu 0 304 133 2298 79 35 0 chr12 123147070 123147360 -20639095 - AluY SINE Alu -11 300 1 2567 87 20 6 chr12 123147382 123147737 -20638718 - L1PA13 LINE L1 -19 6144 5785 253 191 0 0 chr12 123147737 123147779 -20638676 - MER113 DNA MER1_type? -211 310 269 668 305 66 28 chr12 123147865 123148259 -20638196 - MLT1I LTR MaLR 0 409 1 762 262 22 18 chr12 123148371 123148596 -20637859 + MIR SINE MIR 33 258 -4 2058 167 50 34 chr12 123148667 123149211 -20637244 - MLT2A2 LTR ERVL 0 554 1 233 289 13 0 chr12 123150226 123150302 -20636153 - MIR SINE MIR -18 244 168 210 231 167 0 chr12 123150551 123150629 -20635826 - MIR SINE MIR -115 147 57 2374 189 45 142 chr12 123150652 123151061 -20635394 - L1MC4 LINE L1 -6 8036 7752 1640 184 0 31 chr12 123151061 123151381 -20635074 + AluJo SINE Alu 3 312 0 2374 189 45 142 chr12 123151381 123151832 -20634623 - L1MC4 LINE L1 -290 7752 7259 834 247 0 0 chr12 123152058 123152248 -20634207 + L1PB4 LINE L1 5965 6154 -2 2077 139 0 19 chr12 123153552 123153862 -20632593 + AluSx SINE Alu 1 304 -8 284 247 14 0 chr12 123154391 123154464 -20631991 - LTR67 LTR ERVL 0 557 484 2252 211 12 50 chr12 123154828 123154919 -20631536 + MLT1F LTR MaLR 1 94 -448 288 77 0 0 chr12 123154919 123154958 -20631497 + (CA)n Simple_repeat Simple_repeat 2 40 0 2252 211 12 50 chr12 123154958 123155429 -20631026 + MLT1F LTR MaLR 94 542 0 883 244 56 0 chr12 123155626 123155839 -20630616 + LTR16A1 LTR ERVL 218 442 -15 853 183 26 21 chr12 123155868 123156169 -20630286 - MLT1A1 LTR MaLR -15 350 11 458 302 27 62 chr12 123156650 123156908 -20629547 - ERVL LTR ERVL -500 5264 5016 324 231 11 22 chr12 123157269 123157360 -20629095 - L2 LINE L2 0 3313 3224 263 227 45 0 chr12 123157393 123157459 -20628996 + MIR SINE MIR 95 163 -99 332 333 7 13 chr12 123157552 123157702 -20628753 - L2 LINE L2 0 3313 3165 260 259 0 0 chr12 123158240 123158298 -20628157 + L2 LINE L2 3252 3309 -4 468 123 0 0 chr12 123159537 123159610 -20626845 + (GA)n Simple_repeat Simple_repeat 2 74 0 1586 143 147 0 chr12 123159631 123159889 -20626566 + AluSx SINE Alu 1 296 -16 2009 170 0 0 chr12 123160118 123160430 -20626025 - AluSx SINE Alu 0 312 1 326 319 28 14 chr12 123160485 123160629 -20625826 + L2 LINE L2 3168 3313 0 292 182 0 0 chr12 123160993 123161048 -20625407 - Charlie5 DNA MER1_type -27 2585 2531 1249 172 0 15 chr12 123161048 123161252 -20625203 + AluJb SINE Alu 84 284 -28 282 29 0 0 chr12 123161256 123161291 -20625164 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 962 219 50 0 chr12 123161291 123161551 -20624904 - Charlie5 DNA MER1_type -38 2574 2302 345 305 80 1 chr12 123161744 123161909 -20624546 - MIR SINE MIR -58 204 29 432 0 0 0 chr12 123161951 123161999 -20624456 + (CA)n Simple_repeat Simple_repeat 1 48 0 189 284 40 0 chr12 123162617 123162691 -20623764 - MIR SINE MIR -58 150 74 651 297 59 0 chr12 123162848 123163067 -20623388 + MIR SINE MIR 28 259 -3 211 240 20 0 chr12 123164000 123164050 -20622405 + CT-rich Low_complexity Low_complexity 1 51 0 232 266 57 40 chr12 123164101 123164225 -20622230 - MIR SINE MIR -117 145 20 1024 188 10 25 chr12 123164434 123164631 -20621824 - MLT1A1 LTR MaLR -171 194 1 901 292 16 73 chr12 123164710 123165123 -20621332 - LTR16B LTR ERVL -9 441 1 193 311 34 126 chr12 123165133 123165216 -20621239 - L2 LINE L2 -31 3241 3171 2452 73 0 3 chr12 123165216 123165516 -20620939 + AluSc SINE Alu 1 299 -10 193 311 34 126 chr12 123165516 123165551 -20620904 - L2 LINE L2 -101 3171 3134 2194 199 118 9 chr12 123166037 123166569 -20619886 - MLT1G LTR MaLR 0 590 1 322 234 228 23 chr12 123166593 123166764 -20619691 - MIR SINE MIR -29 233 28 405 359 43 14 chr12 123169069 123169299 -20617156 - MIR SINE MIR -19 243 9 480 18 0 0 chr12 123170962 123171019 -20615436 + (TG)n Simple_repeat Simple_repeat 2 58 0 1883 236 35 22 chr12 123171237 123171690 -20614765 + MLT1C LTR MaLR 2 460 -7 305 266 63 32 chr12 123171849 123172007 -20614448 - MER103 DNA DNA -2 164 2 233 333 14 0 chr12 123172073 123172145 -20614310 - MIR3 SINE MIR -54 154 82 207 354 21 10 chr12 123172238 123172334 -20614121 + MIR3 SINE MIR 62 158 -50 1052 232 40 61 chr12 123172339 123172488 -20613967 + MLT1A2 LTR MaLR 1 152 -222 2118 139 33 38 chr12 123172488 123172854 -20613601 + THE1B LTR MaLR 1 364 0 1052 232 40 61 chr12 123172854 123173032 -20613423 + MLT1A2 LTR MaLR 152 321 -53 370 126 11 0 chr12 123173086 123173149 -20613306 + MLT1B LTR MaLR 308 375 0 2509 68 0 0 chr12 123173574 123173866 -20612589 - AluY SINE Alu -19 292 1 429 340 10 5 chr12 123173877 123174074 -20612381 + MIR SINE MIR 11 208 -54 959 223 106 22 chr12 123175253 123175526 -20610929 - LTR16C LTR ERVL -8 483 188 2504 147 5 9 chr12 123175536 123175958 -20610497 - L1MA4A LINE L1 -1 6302 5883 766 298 33 33 chr12 123176158 123176433 -20610022 - MLT1K LTR MaLR -76 512 238 246 271 0 29 chr12 123176827 123176897 -20609558 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 608 275 40 50 chr12 123176931 123177153 -20609302 + MLT1K LTR MaLR 283 502 -86 210 301 24 12 chr12 123177179 123177262 -20609193 + (TATG)n Simple_repeat Simple_repeat 2 85 0 848 53 0 58 chr12 123177303 123177474 -20608981 + (TA)n Simple_repeat Simple_repeat 2 162 0 2579 58 0 0 chr12 123177600 123177895 -20608560 + AluY SINE Alu 1 295 -16 2379 163 68 9 chr12 123178363 123178589 -20607866 + MLT1C LTR MaLR 1 212 -255 441 135 0 101 chr12 123178589 123178678 -20607777 - MADE1 DNA Mariner 0 80 1 2379 163 68 9 chr12 123178678 123178892 -20607563 + MLT1C LTR MaLR 212 467 0 440 297 76 0 chr12 123179463 123179608 -20606847 + MIR SINE MIR 20 175 -87 369 0 0 0 chr12 123179622 123179663 -20606792 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 396 278 137 20 chr12 123179923 123180139 -20606316 - MIR SINE MIR -3 259 20 368 278 65 19 chr12 123181035 123181143 -20605312 + MIR SINE MIR 35 147 -115 575 270 70 15 chr12 123181298 123181498 -20604957 - MIR SINE MIR -51 211 1 180 152 0 0 chr12 123181825 123181858 -20604597 + CT-rich Low_complexity Low_complexity 2 34 0 667 272 61 33 chr12 123182600 123182679 -20603776 - Charlie8 DNA MER1_type -122 219 144 2369 119 113 10 chr12 123182679 123183067 -20603388 - MSTA LTR MaLR 0 428 1 667 272 61 33 chr12 123183067 123183200 -20603255 - Charlie8 DNA MER1_type -197 144 1 246 333 0 60 chr12 123183209 123183326 -20603129 - MIR SINE MIR -59 149 40 2242 114 3 0 chr12 123183534 123183824 -20602631 - AluSx SINE Alu -17 295 5 442 252 101 104 chr12 123183843 123184287 -20602168 + MLT1H LTR MaLR 106 548 -1 233 338 88 22 chr12 123184608 123184744 -20601711 + MIR SINE MIR 48 192 -70 363 256 158 24 chr12 123184911 123185075 -20601380 - MLT1L LTR MaLR -210 405 220 2198 123 0 0 chr12 123185304 123185605 -20600850 - AluSx SINE Alu -11 301 1 214 320 0 50 chr12 123185939 123186039 -20600416 - MER5A DNA MER1_type -29 160 66 1347 257 34 44 chr12 123186548 123186961 -20599494 - MLT1I LTR MaLR 0 409 1 310 333 22 14 chr12 123187101 123187239 -20599216 - MIR SINE MIR -114 148 10 24 0 0 0 chr12 123187583 123187607 -20598848 + AT_rich Low_complexity Low_complexity 1 24 0 412 217 79 104 chr12 123187669 123188010 -20598445 + MLT1H LTR MaLR 91 549 0 265 310 42 42 chr12 123188148 123188290 -20598165 + MIR3 SINE MIR 19 160 -48 420 218 128 15 chr12 123188294 123188427 -20598028 + MER117 DNA MER1_type 6 153 -44 282 333 0 0 chr12 123189322 123189424 -20597031 + L2 LINE L2 3212 3313 0 654 306 4 40 chr12 123189562 123189814 -20596641 - MIR SINE MIR -14 248 6 700 176 33 33 chr12 123189835 123189988 -20596467 - MER5A DNA MER1_type -30 159 7 799 285 115 19 chr12 123190007 123190330 -20596125 - MLT1J2 LTR MaLR -42 408 55 363 23 0 0 chr12 123190664 123190708 -20595747 + (TA)n Simple_repeat Simple_repeat 1 44 0 2116 118 3 0 chr12 123190913 123191200 -20595255 + AluSx SINE Alu 2 289 -23 404 279 0 78 chr12 123191201 123191380 -20595075 + L2 LINE L2 3146 3310 -3 255 211 0 0 chr12 123191552 123191604 -20594851 - MIR SINE MIR 0 262 211 230 267 44 59 chr12 123192192 123192327 -20594128 - L2 LINE L2 -10 3303 3171 * 395 236 124 112 chr12 123192316 123192574 -20593881 - MIR SINE MIR 0 262 2 482 288 132 79 chr12 123192633 123193112 -20593343 - MLT1H LTR MaLR -3 546 43 656 279 44 59 chr12 123193215 123193688 -20592767 + L1ME4a LINE L1 5628 6093 -28 535 255 111 38 chr12 123195285 123195520 -20590935 - MIR SINE MIR 0 262 11 1035 186 0 0 chr12 123196216 123196388 -20590067 - FRAM SINE Alu -4 172 1 267 368 61 0 chr12 123196708 123196822 -20589633 + L2 LINE L2 3132 3252 -20 232 348 11 0 chr12 123196875 123196967 -20589488 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 904 217 22 0 chr12 123197765 123197945 -20588510 + MER3 DNA MER1_type 1 184 -25 181 214 24 0 chr12 123198153 123198195 -20588260 + MIR SINE MIR 108 150 -112 261 146 0 0 chr12 123198752 123198800 -20587655 + (CA)n Simple_repeat Simple_repeat 2 49 0 2252 145 58 19 chr12 123198839 123199252 -20587203 - L1M4 LINE L1 -429 6243 5815 * 5041 218 62 68 chr12 123199238 123199564 -20586891 - L1M4 LINE L1 -1980 4664 4338 236 53 0 0 chr12 123199564 123199602 -20586853 - Alu SINE Alu 0 302 265 5041 218 62 68 chr12 123199602 123200412 -20586043 - L1M4 LINE L1 -2306 4338 3503 1719 145 59 14 chr12 123200412 123200701 -20585754 - AluSx SINE Alu -10 302 1 5041 218 62 68 chr12 123200701 123201326 -20585129 - L1M4 LINE L1 -3141 3503 2876 252 122 0 0 chr12 123201575 123201616 -20584839 + (TC)n Simple_repeat Simple_repeat 2 42 0 382 195 0 0 chr12 123201766 123201843 -20584612 - L1MA7 LINE L1 0 6291 6215 4293 142 23 29 chr12 123201843 123202608 -20583847 - L1MA6 LINE L1 -12 6288 5510 1743 211 45 18 chr12 123202618 123203198 -20583257 - L1M4 LINE L1 -3757 2887 2289 3446 243 56 67 chr12 123203259 123205348 -20581107 - L1M4 LINE L1 -4592 2054 4 437 276 48 0 chr12 123205608 123205713 -20580742 + MER81 DNA DNA 1 110 -4 369 0 0 0 chr12 123205730 123205771 -20580684 + (CA)n Simple_repeat Simple_repeat 1 41 0 1014 163 104 20 chr12 123206095 123206297 -20580158 + MER20 DNA MER1_type 1 219 0 1809 137 18 25 chr12 123206363 123206699 -20579756 + AluSx SINE Alu 1 334 0 314 286 0 0 chr12 123207360 123207437 -20579018 + MIR3 SINE MIR 109 185 -23 370 379 0 6 chr12 123207476 123207645 -20578810 - MER117 DNA MER1_type 0 197 30 212 215 0 31 chr12 123207761 123207778 -20578677 + A-rich Low_complexity Low_complexity 3 19 -46 2447 85 0 0 chr12 123207778 123208084 -20578371 + AluY SINE Alu 1 306 -5 212 215 0 31 chr12 123208084 123208131 -20578324 + A-rich Low_complexity Low_complexity 19 65 0 221 318 34 0 chr12 123208145 123208233 -20578222 + MIR SINE MIR 74 164 -98 269 289 72 7 chr12 123208331 123208483 -20577972 + MER104 DNA Tc2 4 165 -15 376 317 70 7 chr12 123208568 123208710 -20577745 - MIR3 SINE MIR -57 151 1 181 346 0 13 chr12 123209053 123209131 -20577324 - L2 LINE L2 -1 3271 3195 755 307 9 13 chr12 123209166 123209423 -20577032 + MIR SINE MIR 2 256 -6 308 238 32 0 chr12 123209429 123209492 -20576963 - L2 LINE L2 0 3313 3249 2531 151 35 33 chr12 123209502 123209927 -20576528 + MSTB LTR MaLR 1 426 0 291 71 0 0 chr12 123210490 123210532 -20575923 + (ATG)n Simple_repeat Simple_repeat 2 43 0 263 381 60 14 chr12 123210535 123210750 -20575705 - MIR SINE MIR -26 236 12 654 299 25 0 chr12 123210773 123210977 -20575478 - MIR SINE MIR -34 228 20 1570 142 107 0 chr12 123211034 123211154 -20575301 + AluJb SINE Alu 1 107 -205 243 0 0 0 chr12 123211154 123211181 -20575274 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1570 142 107 0 chr12 123211181 123211321 -20575134 + AluJb SINE Alu 107 289 -23 665 264 57 57 chr12 123211581 123211793 -20574662 - MIR SINE MIR -23 239 28 342 338 40 0 chr12 123212695 123212846 -20573609 + L3b LINE CR1 1332 1488 -95 27 29 0 0 chr12 123212985 123213019 -20573436 + AT_rich Low_complexity Low_complexity 1 34 0 626 275 46 69 chr12 123213125 123213562 -20572893 - L1ME4a LINE L1 -109 6012 5586 2142 116 3 3 chr12 123213779 123214090 -20572365 - AluSx SINE Alu -1 311 1 1048 126 0 0 chr12 123214090 123214241 -20572214 - L1PA12 LINE L1 -231 5937 5787 1795 153 32 32 chr12 123214306 123214614 -20571841 - AluJo SINE Alu -4 308 1 450 172 32 0 chr12 123214759 123214852 -20571603 + L1MB2 LINE L1 6076 6171 0 429 298 26 7 chr12 123215079 123215230 -20571225 - MIR SINE MIR -14 248 95 1345 181 136 30 chr12 123215405 123215670 -20570785 - AluJo SINE Alu -7 295 3 297 348 92 30 chr12 123215764 123215928 -20570527 + MIR SINE MIR 8 181 -81 1970 128 7 0 chr12 123215928 123216202 -20570253 + AluSx SINE Alu 1 276 -36 324 0 0 0 chr12 123216202 123216238 -20570217 + (TAA)n Simple_repeat Simple_repeat 2 37 0 237 108 0 0 chr12 123216263 123216300 -20570155 + (TC)n Simple_repeat Simple_repeat 1 37 0 1775 235 75 6 chr12 123216354 123216822 -20569633 - MLT1D LTR MaLR 0 505 6 2223 117 3 0 chr12 123217005 123217304 -20569151 - AluSx SINE Alu -12 300 1 219 283 22 0 chr12 123217819 123217957 -20568498 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 244 269 0 109 chr12 123218035 123218154 -20568301 - MER103 DNA DNA -50 116 11 345 259 60 72 chr12 123218385 123218551 -20567904 - MIR SINE MIR -86 176 13 521 320 81 10 chr12 123219525 123219722 -20566733 + MLT1F1 LTR MaLR 5 215 -352 456 240 58 71 chr12 123219928 123220082 -20566373 - MLT1K LTR MaLR -340 248 97 336 244 244 11 chr12 123220230 123220320 -20566135 + L2 LINE L2 3138 3248 -24 384 263 30 0 chr12 123220437 123220536 -20565919 + MIR SINE MIR 70 171 -91 292 248 248 0 chr12 123221157 123221266 -20565189 + MIR SINE MIR 32 167 -95 409 234 78 31 chr12 123221455 123221583 -20564872 - L2 LINE L2 -20 3293 3160 571 289 109 90 chr12 123221629 123222187 -20564268 + MLT1K LTR MaLR 16 584 -4 207 231 0 0 chr12 123222239 123222278 -20564177 + (TA)n Simple_repeat Simple_repeat 2 40 0 1140 158 26 32 chr12 123222573 123222763 -20563692 - MER5A DNA MER1_type 0 189 1 370 225 181 36 chr12 123222876 123223014 -20563441 + MIR SINE MIR 105 262 0 2589 204 38 55 chr12 123223018 123223620 -20562835 + MLT1G1 LTR MaLR 4 595 0 528 320 79 45 chr12 123224009 123224526 -20561929 + L2 LINE L2 2736 3270 -2 519 242 112 56 chr12 123224720 123224935 -20561520 + MIR SINE MIR 36 262 0 221 163 0 23 chr12 123224935 123224978 -20561477 + (TTG)n Simple_repeat Simple_repeat 2 43 0 377 337 85 20 chr12 123225478 123225677 -20560778 + MIR SINE MIR 4 215 -47 960 250 18 0 chr12 123225689 123225909 -20560546 - MER58A DNA MER1_type 0 224 1 358 233 0 22 chr12 123225912 123226002 -20560453 + MIR SINE MIR 5 92 -170 2508 71 0 0 chr12 123226147 123226444 -20560011 + AluY SINE Alu 1 297 -14 793 171 14 29 chr12 123226563 123226703 -20559752 + FRAM SINE Alu 20 157 -19 267 210 32 0 chr12 123226766 123226828 -20559627 + MIR SINE MIR 2 65 -197 430 39 0 0 chr12 123226842 123226894 -20559561 - MADE1 DNA Mariner 0 80 29 180 111 0 0 chr12 123227019 123227046 -20559409 + (ATG)n Simple_repeat Simple_repeat 3 29 0 257 289 35 63 chr12 123227211 123227353 -20559102 + MIR3 SINE MIR 18 155 -53 660 289 44 26 chr12 123227627 123227985 -20558470 - LTR16A LTR ERVL -30 420 18 423 285 24 8 chr12 123228002 123228125 -20558330 - MIR SINE MIR -106 156 32 385 311 98 43 chr12 123228438 123228612 -20557843 + MIR SINE MIR 15 207 -55 1858 135 30 3 chr12 123228612 123228916 -20557539 - AluSx SINE Alu 0 312 1 385 311 98 43 chr12 123228916 123228976 -20557479 + MIR SINE MIR 207 262 0 271 281 11 22 chr12 123229559 123229648 -20556807 + GA-rich Low_complexity Low_complexity 3 90 0 249 381 71 36 chr12 123229698 123229866 -20556589 + MIR SINE MIR 74 247 -15 329 209 15 15 chr12 123229962 123230029 -20556426 - MER45B DNA AcHobo -1 1039 973 583 247 123 35 chr12 123230037 123230264 -20556191 - MER45B DNA AcHobo -793 247 1 414 319 14 14 chr12 123230430 123230574 -20555881 - MIR SINE MIR -71 191 48 229 212 8 51 chr12 123231441 123231559 -20554896 + (CATA)n Simple_repeat Simple_repeat 2 114 0 242 243 0 14 chr12 123231631 123231701 -20554754 - L1MCa LINE L1 -4349 2077 2009 245 158 49 24 chr12 123231774 123231856 -20554599 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 613 299 103 9 chr12 123231969 123232183 -20554272 - MIR SINE MIR -13 249 16 2550 68 0 0 chr12 123232606 123232917 -20553538 - AluY SINE Alu 0 311 1 368 267 9 9 chr12 123233092 123233197 -20553258 + L2 LINE L2 3192 3296 -17 275 369 43 7 chr12 123233214 123233355 -20553100 + L2 LINE L2 3121 3266 -6 3246 65 0 30 chr12 123233404 123233836 -20552619 - L1PA8 LINE L1 0 6172 5754 419 236 0 28 chr12 123233839 123233945 -20552510 - MIR SINE MIR -79 183 81 596 283 17 52 chr12 123234536 123234597 -20551858 - MIR SINE MIR -21 241 179 306 365 17 28 chr12 123234597 123234775 -20551680 - MER5B DNA MER1_type -2 176 1 596 283 17 52 chr12 123234775 123234943 -20551512 - MIR SINE MIR -83 179 20 227 387 14 7 chr12 123235830 123235972 -20550483 + L3 LINE CR1 884 1026 -551 1324 293 38 22 chr12 123235974 123236169 -20550286 - L2 LINE L2 0 3313 3123 1760 139 0 83 chr12 123236169 123236506 -20549949 + AluSx SINE Alu 1 309 -3 2169 107 3 7 chr12 123236506 123236805 -20549650 + AluSc SINE Alu 1 298 -11 1324 293 38 22 chr12 123236805 123237289 -20549166 - L2 LINE L2 -189 3124 2622 245 295 13 13 chr12 123237324 123237473 -20548982 + (TA)n Simple_repeat Simple_repeat 2 150 0 2356 99 23 57 chr12 123237577 123237923 -20548532 + THE1C LTR MaLR 1 334 -41 2198 101 7 13 chr12 123237923 123238231 -20548224 - AluSc SINE Alu -3 306 1 2356 99 23 57 chr12 123238231 123238268 -20548187 + THE1C LTR MaLR 334 371 -4 216 327 118 23 chr12 123238305 123238568 -20547887 - L2 LINE L2 -527 2787 2500 469 278 167 19 chr12 123238875 123239037 -20547418 + MER91A DNA MER1_type 1 186 -10 183 268 0 0 chr12 123239108 123239149 -20547306 + L2 LINE L2 3230 3270 -43 1096 147 24 0 chr12 123239335 123239505 -20546950 - MER58A DNA MER1_type -8 216 43 432 329 59 0 chr12 123239633 123239803 -20546652 - MIR SINE MIR -4 258 79 196 224 20 0 chr12 123239974 123240023 -20546432 - MIR SINE MIR -145 117 68 217 291 188 26 chr12 123240502 123240619 -20545836 - MIR SINE MIR -10 252 117 1719 232 28 30 chr12 123240688 123241153 -20545302 - Charlie4a DNA MER1_type -24 484 21 210 71 0 0 chr12 123241535 123241563 -20544892 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 382 271 34 42 chr12 123241813 123241931 -20544524 - MIR3 SINE MIR -54 154 38 429 315 66 11 chr12 123242038 123242219 -20544236 - MIR SINE MIR -28 234 44 395 339 24 6 chr12 123243297 123243462 -20542993 - MIR SINE MIR -49 213 46 276 342 132 7 chr12 123243698 123243850 -20542605 - L3 LINE CR1 -22 1555 1385 418 309 36 61 chr12 123243954 123244232 -20542223 + L1MC4a LINE L1 5691 5961 -201 633 174 0 0 chr12 123244644 123244776 -20541679 + CT-rich Low_complexity Low_complexity 1 132 0 231 203 31 62 chr12 123244804 123244868 -20541587 + AluYb8 SINE Alu 108 169 -139 2415 91 0 0 chr12 123244837 123245133 -20541322 + AluY SINE Alu 5 300 -11 10361 69 6 4 chr12 123245133 123247315 -20539140 + L1PA7 LINE L1 3979 6154 0 351 335 15 0 chr12 123247723 123247936 -20538519 - L1ME3A LINE L1 -319 5851 5633 304 309 112 102 chr12 123248013 123248327 -20538128 - L2 LINE L2 -9 3263 2947 378 281 8 0 chr12 123248356 123248477 -20537978 + MIR SINE MIR 133 254 -8 332 325 51 13 chr12 123248993 123249150 -20537305 - MIR SINE MIR -14 248 86 477 303 40 23 chr12 123249210 123249385 -20537070 + MIR SINE MIR 59 236 -26 319 220 101 37 chr12 123250616 123250725 -20535730 + MLT1K LTR MaLR 137 252 -336 318 217 70 35 chr12 123250818 123250933 -20535522 + L1MA10 LINE L1 6215 6333 -1 194 143 20 0 chr12 123251142 123251191 -20535264 + (CA)n Simple_repeat Simple_repeat 1 50 0 2551 65 0 0 chr12 123251247 123251556 -20534899 + AluY SINE Alu 2 310 -1 480 282 24 53 chr12 123251575 123251745 -20534710 - MIR SINE MIR -78 184 20 2372 80 3 0 chr12 123252010 123252310 -20534145 - AluSp SINE Alu -12 301 1 351 329 48 29 chr12 123252425 123252735 -20533720 + L2 LINE L2 2259 2574 -740 234 324 37 15 chr12 123253199 123253335 -20533120 + MIR SINE MIR 124 262 0 22 0 0 0 chr12 123253341 123253363 -20533092 + AT_rich Low_complexity Low_complexity 1 22 0 219 286 0 0 chr12 123253824 123253895 -20532560 - MIR SINE MIR -61 147 76 1000 284 19 4 chr12 123253911 123254168 -20532287 + MIR SINE MIR 2 262 0 526 274 187 59 chr12 123254163 123254554 -20531901 + L2 LINE L2 2864 3304 -9 * 279 0 0 0 chr12 123254675 123254706 -20531749 + (T)n Simple_repeat Simple_repeat 1 31 0 644 232 96 10 chr12 123254896 123255183 -20531272 - MLT1I LTR MaLR 0 409 64 767 222 8 98 chr12 123255296 123255530 -20530925 - MER58A DNA MER1_type -11 213 1 446 271 125 50 chr12 123255590 123255830 -20530625 - MIR SINE MIR -2 260 3 269 362 58 7 chr12 123255878 123256016 -20530439 + MIR SINE MIR 104 248 -14 2157 129 0 0 chr12 123256079 123256373 -20530082 + AluSx SINE Alu 3 296 -16 560 267 64 25 chr12 123256435 123256637 -20529818 + MIR SINE MIR 49 258 -4 862 224 19 52 chr12 123256715 123256925 -20529530 + MER58A DNA MER1_type 1 203 -21 243 236 179 24 chr12 123256961 123257084 -20529371 - L1MC/D LINE L1 -2051 5757 5616 1182 236 54 51 chr12 123258473 123258928 -20527527 - MLT1C LTR MaLR 0 467 1 190 286 0 44 chr12 123258928 123259019 -20527436 + MIR SINE MIR 69 155 -107 5789 90 35 8 chr12 123259057 123259939 -20526516 + L1PA10 LINE L1 5262 6167 -1 470 306 58 15 chr12 123260375 123260581 -20525874 + MIR SINE MIR 38 252 -10 194 362 143 0 chr12 123260737 123260842 -20525613 + MIR SINE MIR 49 168 -94 403 311 15 30 chr12 123260887 123260907 -20525548 - L2 LINE L2 -1 3271 3252 2089 157 9 0 chr12 123260907 123261251 -20525204 + MER7A DNA MER2_type 2 346 0 403 311 15 30 chr12 123261251 123261362 -20525093 - L2 LINE L2 -20 3252 3142 454 261 94 0 chr12 123262195 123262333 -20524122 - MER96 DNA MER1_type? 0 175 25 1575 174 77 20 chr12 123262350 123262435 -20524020 - L1MB4 LINE L1 -3 6177 6098 2334 124 41 8 chr12 123262435 123262797 -20523658 + THE1C LTR MaLR 1 374 -1 1575 174 77 20 chr12 123262797 123263102 -20523353 - L1MB4 LINE L1 -82 6098 5765 1565 142 6 50 chr12 123263102 123263433 -20523022 - MER4A LTR ERV1 -29 635 261 406 141 141 0 chr12 123263433 123263518 -20522937 - MER4A LTR ERV1 -566 98 2 1737 109 46 7 chr12 123263545 123263830 -20522625 - MER4A-int LTR ERV1 -2 6596 6301 2093 211 37 46 chr12 123263836 123264579 -20521876 - L1MB4 LINE L1 -389 5785 5048 2649 90 8 39 chr12 123264579 123264966 -20521489 - THE1C LTR MaLR 0 375 1 2093 211 37 46 chr12 123264966 123264996 -20521459 - L1MB4 LINE L1 -1126 5048 5019 260 238 218 0 chr12 123265034 123265135 -20521320 + MER96 DNA MER1_type? 50 172 -3 771 199 138 25 chr12 123265857 123266053 -20520402 + MER20B DNA MER1_type 1 218 -1 775 93 0 17 chr12 123266349 123266467 -20519988 + L1PA12 LINE L1 5817 5932 -236 590 189 81 14 chr12 123266453 123266601 -20519854 - L1M4 LINE L1 -711 5463 5306 * 857 198 77 0 chr12 123266586 123266808 -20519647 + L1PA13 LINE L1 5921 6159 -4 227 254 131 41 chr12 123266888 123267010 -20519445 - MLT1J2 LTR MaLR 0 450 318 282 206 0 0 chr12 123267052 123267115 -20519340 + CT-rich Low_complexity Low_complexity 3 65 0 550 270 41 10 chr12 123267163 123267359 -20519096 - MLT1J2 LTR MaLR -233 217 16 506 206 31 75 chr12 123267545 123267705 -20518750 - L2 LINE L2 -1 3312 3160 413 311 57 4 chr12 123268864 123269112 -20517343 + L1ME4a LINE L1 5624 5884 -237 216 374 68 29 chr12 123269503 123269709 -20516746 + MIR SINE MIR 5 218 -44 726 234 69 5 chr12 123270264 123270452 -20516003 + L2 LINE L2 2584 2783 -531 472 293 102 19 chr12 123270490 123270656 -20515799 - MIR SINE MIR -3 259 70 2464 82 0 0 chr12 123270656 123270962 -20515493 + AluSg SINE Alu 1 306 -4 472 293 102 19 chr12 123270962 123271010 -20515445 - MIR SINE MIR -192 70 27 1633 165 38 24 chr12 123271025 123271364 -20515091 - MER2 DNA MER2_type 0 344 1 289 318 30 30 chr12 123271409 123271541 -20514914 - MER5B DNA MER1_type -42 136 5 223 326 45 11 chr12 123271544 123271633 -20514822 - MIR SINE MIR -60 202 111 1397 270 51 15 chr12 123271683 123272153 -20514302 + LTR33 LTR ERVL 31 517 -4 2040 154 68 28 chr12 123272242 123272661 -20513794 - MSTC LTR MaLR 0 457 1 783 229 149 8 chr12 123273295 123273557 -20512898 - LTR33A LTR ERVL 0 523 225 251 200 100 14 chr12 123273566 123273636 -20512819 - MLT1H1 LTR MaLR -448 107 32 1667 279 125 45 chr12 123273697 123274706 -20511749 - L1MEc LINE L1 -3692 2523 1597 309 51 0 0 chr12 123274706 123274745 -20511710 + (TG)n Simple_repeat Simple_repeat 2 40 0 1667 279 125 45 chr12 123274745 123276065 -20510390 - L1MEc LINE L1 -4618 1597 35 22 0 0 0 chr12 123276155 123276177 -20510278 + AT_rich Low_complexity Low_complexity 1 22 0 186 371 57 19 chr12 123276193 123276298 -20510157 + L2 LINE L2 3190 3298 -15 2059 110 16 0 chr12 123277034 123277344 -20509111 - L1PB1 LINE L1 -3 6148 5834 361 296 122 26 chr12 123277906 123278095 -20508360 + MIR SINE MIR 16 222 -40 267 264 166 57 chr12 123278602 123278795 -20507660 - MIR SINE MIR -9 253 40 26 0 0 0 chr12 123278875 123278901 -20507554 + AT_rich Low_complexity Low_complexity 1 26 0 2104 123 18 20 chr12 123279720 123280117 -20506338 + L1MA5A LINE L1 5803 6198 -99 209 346 69 0 chr12 123280236 123280366 -20506089 - MIR SINE MIR 0 262 124 351 89 18 0 chr12 123280389 123280445 -20506010 + L1MA5A LINE L1 6238 6294 -3 235 219 125 0 chr12 123280453 123280517 -20505938 - MLT1H LTR MaLR -61 488 417 257 311 30 0 chr12 123280722 123280854 -20505601 - MLT1H LTR MaLR -319 230 95 444 224 60 0 chr12 123280980 123281114 -20505341 + L1ME3A LINE L1 5795 5936 -234 249 216 89 65 chr12 123281196 123281403 -20505052 + L1ME3A LINE L1 5961 6169 -1 219 204 0 0 chr12 123282736 123282785 -20503670 + GA-rich Low_complexity Low_complexity 3 51 0 193 277 0 0 chr12 123282861 123282908 -20503547 - L2 LINE L2 -16 3297 3251 311 344 16 8 chr12 123283420 123283542 -20502913 - MIR SINE MIR -119 143 21 1056 330 56 17 chr12 123283713 123284176 -20502279 - MLT1K LTR MaLR -105 483 3 214 294 257 0 chr12 123284284 123284393 -20502062 - MIR3 SINE MIR -39 169 33 2410 58 3 7 chr12 123284802 123285111 -20501344 - AluY SINE Alu -2 309 2 949 200 10 15 chr12 123285224 123285424 -20501031 + MER58A DNA MER1_type 26 224 0 275 319 50 0 chr12 123285572 123285713 -20500742 + Charlie8 DNA MER1_type 97 244 -2173 433 315 34 20 chr12 123286018 123286164 -20500291 - MIR3 SINE MIR -49 159 12 409 170 50 10 chr12 123286196 123286296 -20500159 - MER20B DNA MER1_type -16 767 664 270 0 0 0 chr12 123286298 123286328 -20500127 + (CA)n Simple_repeat Simple_repeat 2 31 0 826 299 98 9 chr12 123286363 123286851 -20499604 - MER20B DNA MER1_type -233 550 1 278 262 36 0 chr12 123287669 123287753 -20498702 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 505 103 22 53 chr12 123287852 123287987 -20498468 - L1 LINE L1 -789 5357 5213 1855 196 14 6 chr12 123289034 123289396 -20497059 + MLT1A1 LTR MaLR 1 365 0 259 340 21 0 chr12 123289455 123289549 -20496906 - MIR SINE MIR -32 230 135 319 191 12 12 chr12 123289591 123289675 -20496780 + CT-rich Low_complexity Low_complexity 1 84 0 344 293 35 58 chr12 123289675 123289834 -20496621 - MIR3 SINE MIR -63 145 3 2682 75 0 14 chr12 123290025 123290384 -20496071 + L1PA8A LINE L1 5777 6130 -1 1760 146 3 9 chr12 123290397 123290720 -20495735 + L1MA8 LINE L1 5804 6124 -167 220 45 91 0 chr12 123290780 123290824 -20495631 + A-rich Low_complexity Low_complexity 6 53 0 256 284 61 40 chr12 123290862 123291010 -20495445 - L1MC4a LINE L1 -1773 6035 5885 355 295 79 58 chr12 123292738 123292928 -20493527 + L2 LINE L2 3120 3313 0 283 308 39 0 chr12 123292932 123293010 -20493445 + L2 LINE L2 3192 3272 0 789 245 3 96 chr12 123293058 123293135 -20493320 - L1ME LINE L1 -5437 633 550 938 98 12 12 chr12 123293135 123293308 -20493147 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 789 245 3 96 chr12 123293308 123293553 -20492902 - L1ME LINE L1 -5520 550 341 592 245 12 37 chr12 123293560 123293723 -20492732 - L1ME LINE L1 -5844 226 68 757 85 43 6 chr12 123293723 123293887 -20492568 + (TCTA)n Simple_repeat Simple_repeat 2 171 0 659 323 115 46 chr12 123293895 123294391 -20492064 - LTR67 LTR ERVL -6 551 22 215 200 36 0 chr12 123294420 123294475 -20491980 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2275 131 12 27 chr12 123294643 123295130 -20491325 - L1MA6 LINE L1 0 6300 5693 209 398 0 0 chr12 123295403 123295511 -20490944 - MIR SINE MIR -71 191 84 291 265 0 12 chr12 123295590 123295673 -20490782 - MLT1I LTR MaLR -11 398 317 384 248 109 40 chr12 123295678 123295779 -20490676 - MER81 DNA DNA -5 109 2 531 214 179 6 chr12 123295867 123296035 -20490420 - MLT1J1 LTR MaLR -235 211 15 2089 174 8 14 chr12 123296083 123296450 -20490005 - MLT1A1 LTR MaLR 0 365 1 435 285 122 19 chr12 123296542 123296854 -20489601 - L1ME4a LINE L1 -19 6102 5759 796 269 42 34 chr12 123296870 123296921 -20489534 + MIR SINE MIR 7 56 -206 1853 288 22 81 chr12 123296921 123297081 -20489374 + MER115 DNA AcHobo 1 169 -524 2076 119 17 3 chr12 123297081 123297375 -20489080 - AluSc SINE Alu -11 298 1 1853 288 22 81 chr12 123297375 123297868 -20488587 + MER115 DNA AcHobo 169 608 -85 2458 66 0 10 chr12 123297868 123298169 -20488286 - AluY SINE Alu -13 298 1 1853 288 22 81 chr12 123298169 123298251 -20488204 + MER115 DNA AcHobo 608 693 0 796 269 42 34 chr12 123298251 123298437 -20488018 + MIR SINE MIR 56 246 -16 230 81 27 0 chr12 123298462 123298499 -20487956 + (TTA)n Simple_repeat Simple_repeat 2 39 0 404 298 45 22 chr12 123298509 123298687 -20487768 - L1ME4a LINE L1 -377 5744 5563 878 264 190 19 chr12 123299385 123299817 -20486638 + LTR33 LTR ERVL 16 521 0 605 304 30 0 chr12 123299886 123300054 -20486401 + MIR SINE MIR 2 174 -88 576 73 0 0 chr12 123300055 123300123 -20486332 - AluJ/FRAM SINE Alu -17 295 228 235 350 154 0 chr12 123300225 123300368 -20486087 - MLT1H1 LTR MaLR 0 595 431 732 284 55 32 chr12 123300371 123300681 -20485774 - MLT1H1 LTR MaLR -225 330 14 2686 145 27 2 chr12 123300771 123301178 -20485277 - L1PA15 LINE L1 0 6165 5749 1310 298 40 64 chr12 123301657 123302359 -20484096 - MER21B LTR ERV1 -155 708 24 1677 171 34 24 chr12 123302373 123302671 -20483784 - AluJo SINE Alu -3 309 9 331 287 119 35 chr12 123303013 123303156 -20483299 + MIR3 SINE MIR 33 187 -21 398 363 65 56 chr12 123303280 123303476 -20482979 - L2 LINE L2 0 3272 3070 2321 77 7 10 chr12 123303476 123303786 -20482669 + AluSc SINE Alu 1 309 0 398 363 65 56 chr12 123303786 123303911 -20482544 - L2 LINE L2 -202 3070 2948 735 249 65 32 chr12 123304192 123304409 -20482046 - MIR SINE MIR -6 256 33 372 333 116 14 chr12 123304577 123304793 -20481662 - MIR SINE MIR -14 248 11 233 240 93 40 chr12 123305426 123305501 -20480954 - Charlie4 DNA MER1_type -16 1945 1867 616 274 79 25 chr12 123305621 123305862 -20480593 + MIR SINE MIR 2 255 -7 234 0 0 0 chr12 123307373 123307399 -20479056 + (TA)n Simple_repeat Simple_repeat 2 27 0 259 242 22 22 chr12 123307403 123307494 -20478961 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 307 142 9 47 chr12 123307510 123307616 -20478839 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 332 286 54 9 chr12 123307779 123307891 -20478564 - MIR SINE MIR -38 224 108 468 266 27 33 chr12 123308835 123309019 -20477436 + MER53 DNA DNA 2 184 -5 219 283 17 0 chr12 123309238 123309298 -20477157 - MIR SINE MIR -90 172 112 276 296 34 0 chr12 123309371 123309459 -20476996 - MIR SINE MIR -138 124 34 330 353 21 11 chr12 123309601 123309788 -20476667 + MIR3 SINE MIR 18 206 -2 195 250 29 88 chr12 123309894 123309962 -20476493 + MIR SINE MIR 58 121 -87 1267 230 84 26 chr12 123310225 123310616 -20475839 - MER119 DNA MER1_type -1 582 169 428 279 49 46 chr12 123310621 123310928 -20475527 + L1MDa LINE L1 35 388 -6152 1832 123 39 3 chr12 123311370 123311654 -20474801 - L1MA5 LINE L1 -10 6290 5997 221 264 94 0 chr12 123311793 123311846 -20474609 + L2 LINE L2 3242 3299 -14 249 33 0 0 chr12 123311847 123311877 -20474578 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 316 299 9 28 chr12 123312029 123312136 -20474319 - MIR SINE MIR -99 163 59 937 213 29 38 chr12 123312386 123312626 -20473829 - L1ME2 LINE L1 -9 6155 5918 501 268 145 22 chr12 123312836 123313064 -20473391 + MIR SINE MIR 7 262 0 443 230 73 26 chr12 123313987 123314123 -20472332 - MIR SINE MIR -58 150 55 807 236 0 31 chr12 123314379 123314574 -20471881 + MER53 DNA DNA 1 189 0 944 249 187 42 chr12 123314812 123315315 -20471140 + MLT1G LTR MaLR 15 590 0 226 243 311 0 chr12 123315333 123315407 -20471048 + MIR SINE MIR 56 152 -110 245 321 45 27 chr12 123315407 123315519 -20470936 - MIR SINE MIR -61 147 34 497 241 143 8 chr12 123315570 123315646 -20470809 + MIR SINE MIR 112 176 -86 312 27 0 0 chr12 123315646 123315683 -20470772 + (CA)n Simple_repeat Simple_repeat 2 38 0 497 241 143 8 chr12 123315683 123315739 -20470716 + MIR SINE MIR 176 262 0 276 252 78 39 chr12 123316470 123316573 -20469882 - MIR SINE MIR -127 135 29 420 298 82 43 chr12 123316619 123316854 -20469601 + MIR SINE MIR 15 258 -4 427 301 51 26 chr12 123317253 123317409 -20469046 - MLT1I LTR MaLR -249 160 1 779 264 35 18 chr12 123317440 123317667 -20468788 - MIR SINE MIR 0 262 32 497 267 35 0 chr12 123317932 123318048 -20468407 + L2 LINE L2 3193 3312 -1 242 245 0 0 chr12 123319247 123319296 -20467159 - MIR SINE MIR -29 233 185 253 333 49 0 chr12 123319304 123319406 -20467049 - MER94 DNA DNA 0 134 28 530 254 30 10 chr12 123319429 123319576 -20466879 - MIR SINE MIR -69 193 46 223 344 78 39 chr12 123319727 123319801 -20466654 - L2 LINE L2 -4 3268 3198 462 36 0 0 chr12 123319801 123319857 -20466598 + (CA)n Simple_repeat Simple_repeat 2 57 0 223 344 78 39 chr12 123319857 123319936 -20466519 - L2 LINE L2 -74 3198 3109 590 297 18 45 chr12 123320065 123320287 -20466168 + MER102a DNA MER1_type 115 330 0 506 235 82 29 chr12 123320418 123320588 -20465867 - MER117 DNA MER1_type -10 187 9 261 228 0 0 chr12 123321266 123321345 -20465110 + (TG)n Simple_repeat Simple_repeat 1 79 0 1980 167 51 35 chr12 123321382 123321926 -20464529 - MLT2A2 LTR ERVL 0 554 1 209 357 0 32 chr12 123321999 123322153 -20464302 + (TATATG)n Simple_repeat Simple_repeat 6 154 0 222 91 0 0 chr12 123322638 123322671 -20463784 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 225 0 0 0 chr12 123322670 123322695 -20463760 + (GA)n Simple_repeat Simple_repeat 1 25 0 476 271 16 0 chr12 123322931 123323053 -20463402 + MER117 DNA MER1_type 68 191 -6 1043 218 0 0 chr12 123323161 123323335 -20463120 - MER96 DNA MER1_type -1 174 1 276 212 188 0 chr12 123323702 123323787 -20462668 + MIR SINE MIR 158 258 -4 701 229 4 0 chr12 123323802 123324074 -20462381 + (CAT)n Simple_repeat Simple_repeat 1 273 0 844 141 0 22 chr12 123324089 123324273 -20462182 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 189 195 0 0 chr12 123324298 123324339 -20462116 + (CAT)n Simple_repeat Simple_repeat 2 42 0 637 226 11 0 chr12 123325062 123325239 -20461216 + GA-rich Low_complexity Low_complexity 1 179 0 2171 109 0 0 chr12 123325302 123325586 -20460869 + AluSx SINE Alu 27 310 -2 183 264 111 0 chr12 123326099 123326171 -20460284 - MIR SINE MIR -36 226 147 215 255 0 39 chr12 123326257 123326308 -20460147 - MIR SINE MIR -74 134 86 273 200 0 0 chr12 123326408 123326458 -20459997 + MIR SINE MIR 103 152 -110 224 400 0 0 chr12 123326469 123326589 -20459866 - MIR SINE MIR -6 256 137 2019 138 24 0 chr12 123327008 123327305 -20459150 + AluSx SINE Alu 1 304 -8 262 265 73 0 chr12 123327362 123327430 -20459025 - L2 LINE L2 -3 3269 3197 574 241 5 96 chr12 123328683 123328882 -20457573 - MIR SINE MIR -54 208 28 241 302 246 22 chr12 123328990 123329169 -20457286 - MIR SINE MIR -12 250 32 4444 207 26 13 chr12 123329349 123330596 -20455859 + L1MA9 LINE L1 5005 6273 -39 374 325 56 0 chr12 123330671 123330797 -20455658 + L2 LINE L2 3134 3266 -6 723 264 130 33 chr12 123330877 123330932 -20455523 + MER102a DNA MER1_type 3 51 -1366 1032 290 19 57 chr12 123330932 123331353 -20455102 - MLT1I LTR MaLR -4 405 1 723 264 130 33 chr12 123331353 123331596 -20454859 + MER102a DNA MER1_type 51 330 0 610 299 123 50 chr12 123332126 123332507 -20453948 - MLT1I LTR MaLR 0 409 1 1936 146 0 0 chr12 123332572 123332852 -20453603 + AluSx SINE Alu 11 290 -22 34 24 0 0 chr12 123332852 123332893 -20453562 + AT_rich Low_complexity Low_complexity 1 41 0 473 244 103 123 chr12 123332952 123333341 -20453114 + L2 LINE L2 2928 3308 -5 479 317 50 11 chr12 123333442 123333622 -20452833 - MIR SINE MIR -74 188 2 2390 113 118 23 chr12 123333745 123334136 -20452319 + MSTA LTR MaLR 1 428 0 1074 201 244 23 chr12 123334252 123334601 -20451854 + MLT1D LTR MaLR 77 502 -3 271 293 75 8 chr12 123334927 123335060 -20451395 + MIR SINE MIR 113 254 -8 29 0 0 0 chr12 123337156 123337185 -20449270 + AT_rich Low_complexity Low_complexity 1 29 0 260 278 257 35 chr12 123337522 123337666 -20448789 + MIR SINE MIR 37 212 -50 647 269 122 0 chr12 123338050 123338247 -20448208 - MIR SINE MIR -6 256 36 1875 135 33 20 chr12 123338658 123338962 -20447493 + AluSx SINE Alu 1 308 -4 306 229 69 99 chr12 123339069 123339200 -20447255 - L2 LINE L2 -6 3266 3140 23 33 0 0 chr12 123339453 123339483 -20446972 + AT_rich Low_complexity Low_complexity 1 30 0 875 254 113 36 chr12 123339496 123339901 -20446554 + MER57A LTR ERV1 1 403 0 537 121 55 11 chr12 123339901 123339992 -20446463 - L1MD2 LINE L1 -37 6322 6228 261 0 0 0 chr12 123340323 123340352 -20446103 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 322 320 33 28 chr12 123340357 123340538 -20445917 - L2 LINE L2 -251 3021 2840 314 293 87 27 chr12 123341421 123341571 -20444884 - MIR SINE MIR -23 239 81 507 245 80 77 chr12 123341571 123341857 -20444598 - MER96B DNA MER1_type? 0 417 131 1470 167 31 31 chr12 123341865 123342159 -20444296 - AluJb SINE Alu -18 294 1 204 40 0 0 chr12 123342159 123342184 -20444271 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 444 104 0 0 chr12 123342206 123342273 -20444182 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 2233 113 0 22 chr12 123342287 123342605 -20443850 - AluSx SINE Alu -1 311 1 1935 107 0 8 chr12 123342607 123342870 -20443585 - AluSx SINE Alu -16 296 36 433 248 86 0 chr12 123342875 123342980 -20443475 + MER96B DNA MER1_type? 302 415 -2 1016 273 73 85 chr12 123343312 123343526 -20442929 - L2 LINE L2 0 3313 3098 2004 119 7 23 chr12 123343526 123343828 -20442627 + AluSx SINE Alu 3 299 -13 1016 273 73 85 chr12 123343828 123344400 -20442055 - L2 LINE L2 -215 3098 2549 223 305 16 55 chr12 123344557 123344685 -20441770 + MIR SINE MIR 29 151 -111 189 0 0 0 chr12 123344993 123345014 -20441441 + (T)n Simple_repeat Simple_repeat 1 21 0 239 231 165 33 chr12 123345720 123345811 -20440644 + MIR3 SINE MIR 104 206 -2 2312 96 6 10 chr12 123346650 123346962 -20439493 - AluSp SINE Alu -2 311 1 258 362 18 37 chr12 123347120 123347338 -20439117 + MIR SINE MIR 48 261 -1 251 292 9 71 chr12 123348225 123348338 -20438117 + L2 LINE L2 3163 3268 -4 423 354 56 22 chr12 123348959 123349137 -20437318 - L2 LINE L2 -5 3267 3084 436 296 24 8 chr12 123349201 123349326 -20437129 + MIR SINE MIR 106 232 -30 241 309 0 0 chr12 123349365 123349433 -20437022 - MIR SINE MIR -114 148 81 236 193 108 72 chr12 123350370 123350453 -20436002 + L1ME4a LINE L1 5959 6044 -77 417 103 0 0 chr12 123350642 123350710 -20435745 + Alu SINE Alu 245 312 0 242 240 67 13 chr12 123350844 123350919 -20435536 - MER103 DNA DNA -29 137 59 275 259 0 0 chr12 123350961 123351019 -20435436 + L2 LINE L2 3252 3309 -4 468 123 0 0 chr12 123352258 123352331 -20434124 + (GA)n Simple_repeat Simple_repeat 2 74 0 1717 131 142 0 chr12 123352352 123352620 -20433835 + AluSx SINE Alu 1 306 -6 1845 146 17 3 chr12 123352770 123353058 -20433397 - AluSx SINE Alu -20 292 1 225 387 83 48 chr12 123355472 123355870 -20430585 + L2 LINE L2 2843 3254 -18 220 229 29 14 chr12 123355870 123355940 -20430515 + GA-rich Low_complexity Low_complexity 1 71 0 433 270 146 0 chr12 123356134 123356271 -20430184 + MIR SINE MIR 92 248 -14 1200 253 106 23 chr12 123357257 123357653 -20428802 + LTR16A LTR ERVL 16 444 -6 446 336 40 74 chr12 123357731 123358029 -20428426 - L2 LINE L2 -18 3254 2967 1202 257 58 63 chr12 123358189 123358668 -20427787 + MLT1H LTR MaLR 73 549 0 584 254 57 38 chr12 123358710 123358919 -20427536 - MIR SINE MIR -2 260 48 1848 121 68 0 chr12 123358964 123359244 -20427211 - AluSx SINE Alu 0 312 14 327 282 49 42 chr12 123359453 123359595 -20426860 + MIR3 SINE MIR 5 147 -61 942 266 141 19 chr12 123360126 123360494 -20425961 - LTR16A LTR ERVL -1 449 37 219 139 0 0 chr12 123361014 123361050 -20425405 + (CACCAT)n Simple_repeat Simple_repeat 3 38 0 474 233 47 53 chr12 123361067 123361217 -20425238 - MIR SINE MIR -47 215 67 307 261 126 39 chr12 123362738 123362968 -20423487 - L1M4 LINE L1 -3785 2361 2112 4901 144 12 28 chr12 123362999 123363812 -20422643 - L1MC1 LINE L1 0 6333 5534 211 264 19 0 chr12 123363827 123363880 -20422575 + CT-rich Low_complexity Low_complexity 2 55 0 185 365 24 16 chr12 123364122 123364248 -20422207 + MIR SINE MIR 44 170 -92 234 281 47 41 chr12 123364586 123364757 -20421698 + (TCTCTG)n Simple_repeat Simple_repeat 2 173 0 206 272 22 49 chr12 123364854 123365038 -20421417 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1402 235 68 42 chr12 123366190 123366645 -20419810 - MLT1C LTR MaLR 0 467 1 726 280 100 29 chr12 123366740 123367119 -20419336 - MER113 DNA MER1_type? -115 406 1 206 186 9 127 chr12 123367343 123367429 -20419026 - MIR SINE MIR -107 155 86 381 305 80 1 chr12 123367500 123367665 -20418790 - MIR SINE MIR -58 204 29 432 0 0 0 chr12 123367707 123367755 -20418700 + (CA)n Simple_repeat Simple_repeat 1 48 0 215 304 40 61 chr12 123368373 123368521 -20417934 - MIR3 SINE MIR -58 150 6 716 297 59 0 chr12 123368604 123368823 -20417632 + MIR SINE MIR 28 259 -3 188 378 17 25 chr12 123369001 123369120 -20417335 - MIR3 SINE MIR -38 170 53 211 240 20 0 chr12 123369756 123369806 -20416649 + CT-rich Low_complexity Low_complexity 1 51 0 273 274 48 32 chr12 123369857 123369981 -20416474 - MIR SINE MIR -117 145 20 1023 188 10 25 chr12 123370190 123370387 -20416068 - MLT1A1 LTR MaLR -171 194 1 896 294 15 72 chr12 123370466 123370879 -20415576 - LTR16B LTR ERVL -9 441 1 228 311 34 126 chr12 123370889 123370972 -20415483 - L2 LINE L2 -31 3241 3171 2421 74 0 3 chr12 123370972 123371271 -20415184 + AluSc SINE Alu 1 298 -11 228 311 34 126 chr12 123371271 123371306 -20415149 - L2 LINE L2 -101 3171 3134 2389 199 118 9 chr12 123371792 123372324 -20414131 - MLT1G LTR MaLR 0 590 1 380 234 228 23 chr12 123372348 123372519 -20413936 - MIR SINE MIR -29 233 28 456 342 45 36 chr12 123374823 123375045 -20411410 - MIR SINE MIR -19 243 20 9426 83 4 11 chr12 123375301 123376515 -20409940 + HERVL LTR ERVL 1469 2674 -2980 821 122 442 5 chr12 123376615 123376812 -20409643 - THE1C-int LTR MaLR -1297 283 1 2069 164 32 27 chr12 123376812 123377185 -20409270 - THE1C LTR MaLR 0 375 1 1558 158 10 143 chr12 123377185 123377673 -20408782 - L1 LINE L1 -2565 5000 4578 725 204 13 20 chr12 123377776 123377928 -20408527 - MLT1A1 LTR MaLR -214 151 1 3792 141 21 28 chr12 123378896 123379116 -20407339 - L1 LINE L1 -4774 2791 2571 2247 116 26 0 chr12 123379116 123379419 -20407036 - AluY SINE Alu 0 311 1 3792 141 21 28 chr12 123379419 123379924 -20406531 - L1 LINE L1 -4994 2571 2071 224 242 84 42 chr12 123380107 123380202 -20406253 + L2 LINE L2 3168 3266 -6 334 272 0 125 chr12 123380216 123380352 -20406103 + L2 LINE L2 3191 3309 -4 2235 122 0 0 chr12 123380632 123380936 -20405519 + AluSx SINE Alu 2 305 -7 794 239 45 5 chr12 123380938 123381139 -20405316 + MER65C LTR ERV1 1 209 -252 327 248 21 71 chr12 123382032 123382173 -20404282 + L1M4 LINE L1 5106 5239 -907 425 70 18 0 chr12 123382209 123382266 -20404189 + MADE1 DNA Mariner 1 58 -22 8119 77 29 1 chr12 123382415 123383481 -20402974 + HERVL LTR ERVL 56 1151 -4503 9497 97 7 1 chr12 123383581 123384905 -20401550 + L1P LINE L1 1460 2791 -3355 802 85 19 19 chr12 123385005 123385111 -20401344 + L1PA10 LINE L1 6059 6164 -4 411 269 156 30 chr12 123385363 123385585 -20400870 + MIR SINE MIR 19 260 -2 1599 187 3 26 chr12 123385921 123386231 -20400224 - AluJb SINE Alu -9 303 1 471 160 64 0 chr12 123386362 123386456 -20399999 - MER53 DNA DNA -89 100 1 813 161 90 7 chr12 123386741 123386896 -20399559 - MSTA LTR MaLR -259 169 2 264 167 0 0 chr12 123387128 123387176 -20399279 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 329 97 31 chr12 123387359 123387665 -20398790 - MLT1I LTR MaLR 0 409 78 7519 87 8 2 chr12 123388109 123389081 -20397374 + HERVL-A1 LTR ERVL 4677 5654 0 2979 90 2 10 chr12 123389081 123389483 -20396972 + MLT2A1 LTR ERVL 1 399 -45 3134 119 26 9 chr12 123390327 123390788 -20395667 - L1PA16 LINE L1 -2 6164 5696 7128 163 18 29 chr12 123390888 123392210 -20394245 + L1P LINE L1 172 1479 -4667 978 187 0 0 chr12 123392311 123392482 -20393973 - L1 LINE L1 -1344 4802 4632 305 87 0 22 chr12 123392484 123392530 -20393925 - MADE1 DNA Mariner -35 45 1 427 256 59 51 chr12 123393686 123393913 -20392542 + MLT1H LTR MaLR 324 549 0 258 299 52 23 chr12 123393914 123394132 -20392323 - MLT1L LTR MaLR -361 254 2 288 135 0 0 chr12 123395286 123395338 -20391117 + AluSc SINE Alu 247 298 -1 214 414 11 0 chr12 123395726 123395813 -20390642 + L2 LINE L2 338 425 -2889 26 82 0 0 chr12 123396605 123396666 -20389789 + AT_rich Low_complexity Low_complexity 1 61 0 431 264 168 32 chr12 123396867 123397022 -20389433 + MIR3 SINE MIR 32 207 -1 295 307 74 12 chr12 123397650 123397769 -20388686 + MIR SINE MIR 31 154 -65 189 162 114 114 chr12 123397803 123397908 -20388547 + L2 LINE L2 2546 2650 -664 524 287 56 41 chr12 123397932 123398127 -20388328 + MER63A DNA MER1_type 1 198 -12 22 35 0 0 chr12 123398407 123398436 -20388019 + AT_rich Low_complexity Low_complexity 1 29 0 185 326 0 0 chr12 123398499 123398548 -20387907 + L2 LINE L2 3209 3257 -15 596 134 12 0 chr12 123398946 123399028 -20387427 + AluS SINE Alu 2 84 -229 2936 247 52 36 chr12 123399128 123400258 -20386197 + L1MEc LINE L1 323 1470 -4926 2318 103 0 0 chr12 123400258 123400559 -20385896 + AluSg SINE Alu 1 301 -9 8791 102 76 0 chr12 123400674 123401918 -20384537 + THE1A-int LTR MaLR 242 1580 0 2627 118 3 3 chr12 123401918 123402273 -20384182 + THE1A LTR MaLR 1 355 0 509 179 26 0 chr12 123402475 123402553 -20383902 - AluS SINE Alu -232 81 2 2829 103 8 13 chr12 123404370 123404747 -20381708 + THE1C LTR MaLR 1 375 0 444 246 46 80 chr12 123405276 123405451 -20381004 - MIR SINE MIR -42 220 52 297 250 15 29 chr12 123405456 123405524 -20380931 - MIR SINE MIR -165 97 31 252 0 0 0 chr12 123405672 123405700 -20380755 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 220 340 7 chr12 123406411 123406552 -20379903 - MER5A DNA MER1_type 0 189 2 3416 135 4 4 chr12 123406918 123407415 -20379040 - LOR1a LTR ERV1 0 497 1 25 31 0 0 chr12 123407419 123407451 -20379004 + AT_rich Low_complexity Low_complexity 1 32 0 227 86 0 0 chr12 123407451 123407486 -20378969 - L1PB1 LINE L1 0 6151 6117 243 0 0 0 chr12 123407502 123407529 -20378926 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 123407939 123407961 -20378494 + AT_rich Low_complexity Low_complexity 1 22 0 1685 83 0 0 chr12 123408204 123408409 -20378046 - AluSc SINE Alu -32 277 73 489 191 44 73 chr12 123408488 123409500 -20376955 - SVA Other Other -798 588 457 * 604 88 12 0 chr12 123409493 123409573 -20376882 - AluSc SINE Alu -225 84 4 328 195 9 14 chr12 123409708 123409821 -20376634 - MER4A LTR ERV1 -233 431 261 447 141 141 0 chr12 123409821 123409906 -20376549 - MER4A LTR ERV1 -566 98 2 1832 111 46 7 chr12 123409933 123410213 -20376242 - MER4A-int LTR ERV1 -2 6596 6306 345 277 0 39 chr12 123410213 123410315 -20376140 - L1MC/D LINE L1 -550 5784 5696 259 188 0 0 chr12 123410930 123410978 -20375477 - L2 LINE L2 0 3313 3266 829 168 54 0 chr12 123411130 123411279 -20375176 + Tigger3(Golem) DNA MER2_type 133 289 -2740 692 277 32 28 chr12 123411307 123411556 -20374899 + MER7A DNA MER2_type 16 263 -83 360 247 22 3 chr12 123411658 123411765 -20374690 - AluS SINE Alu -231 72 2 515 272 89 30 chr12 123413109 123413311 -20373144 - MIR SINE MIR -5 257 44 316 257 103 15 chr12 123413815 123413951 -20372504 + MIR SINE MIR 112 259 -3 1836 110 0 0 chr12 123414467 123414712 -20371743 + AluSg/x SINE Alu 66 310 -2 183 264 111 0 chr12 123415225 123415297 -20371158 - MIR SINE MIR -36 226 147 215 255 0 39 chr12 123415383 123415434 -20371021 - MIR SINE MIR -74 134 86 273 200 0 0 chr12 123415534 123415584 -20370871 + MIR SINE MIR 103 152 -110 224 400 0 0 chr12 123415595 123415715 -20370740 - MIR SINE MIR -6 256 137 2019 138 24 0 chr12 123416134 123416431 -20370024 + AluSx SINE Alu 1 304 -8 262 265 73 0 chr12 123416488 123416556 -20369899 - L2 LINE L2 -3 3269 3197 574 241 5 96 chr12 123417809 123418008 -20368447 - MIR SINE MIR -54 208 28 227 286 90 60 chr12 123418116 123418249 -20368206 - MIR SINE MIR -12 250 114 4444 207 26 13 chr12 123418420 123419667 -20366788 + L1MA9 LINE L1 5005 6273 -39 374 325 56 0 chr12 123419742 123419868 -20366587 + L2 LINE L2 3134 3266 -6 723 264 130 33 chr12 123419948 123420003 -20366452 + MER102a DNA MER1_type 3 51 -1366 1032 290 19 57 chr12 123420003 123420424 -20366031 - MLT1I LTR MaLR -4 405 1 723 264 130 33 chr12 123420424 123420667 -20365788 + MER102a DNA MER1_type 51 330 0 610 299 123 50 chr12 123421197 123421578 -20364877 - MLT1I LTR MaLR 0 409 1 1936 146 0 0 chr12 123421643 123421923 -20364532 + AluSx SINE Alu 11 290 -22 34 24 0 0 chr12 123421923 123421964 -20364491 + AT_rich Low_complexity Low_complexity 1 41 0 473 244 103 123 chr12 123422023 123422412 -20364043 + L2 LINE L2 2928 3308 -5 479 317 50 11 chr12 123422513 123422693 -20363762 - MIR SINE MIR -74 188 2 2390 113 118 23 chr12 123422816 123423207 -20363248 + MSTA LTR MaLR 1 428 0 1074 201 244 23 chr12 123423323 123423672 -20362783 + MLT1D LTR MaLR 77 502 -3 271 293 75 8 chr12 123423998 123424131 -20362324 + MIR SINE MIR 113 254 -8 29 0 0 0 chr12 123426227 123426256 -20360199 + AT_rich Low_complexity Low_complexity 1 29 0 260 278 257 35 chr12 123426593 123426737 -20359718 + MIR SINE MIR 37 212 -50 647 269 122 0 chr12 123427121 123427318 -20359137 - MIR SINE MIR -6 256 36 1875 135 33 20 chr12 123427729 123428033 -20358422 + AluSx SINE Alu 1 308 -4 306 229 69 99 chr12 123428140 123428271 -20358184 - L2 LINE L2 -6 3266 3140 23 33 0 0 chr12 123428524 123428554 -20357901 + AT_rich Low_complexity Low_complexity 1 30 0 875 254 113 36 chr12 123428567 123428972 -20357483 + MER57A LTR ERV1 1 403 0 537 121 55 11 chr12 123428972 123429063 -20357392 - L1MD2 LINE L1 -37 6322 6228 261 0 0 0 chr12 123429394 123429423 -20357032 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 322 320 33 28 chr12 123429428 123429609 -20356846 - L2 LINE L2 -251 3021 2840 314 293 87 27 chr12 123430492 123430642 -20355813 - MIR SINE MIR -23 239 81 427 244 25 8 chr12 123430642 123430761 -20355694 - MER96B DNA MER1_type? 0 417 297 241 163 0 0 chr12 123430875 123430924 -20355531 - MER96B DNA MER1_type? -238 179 131 1470 167 31 31 chr12 123430932 123431226 -20355229 - AluJb SINE Alu -18 294 1 204 40 0 0 chr12 123431226 123431251 -20355204 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 444 104 0 0 chr12 123431273 123431340 -20355115 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 2233 113 0 22 chr12 123431354 123431672 -20354783 - AluSx SINE Alu -1 311 1 1935 107 0 8 chr12 123431674 123431937 -20354518 - AluSx SINE Alu -16 296 36 433 248 86 0 chr12 123431942 123432047 -20354408 + MER96B DNA MER1_type? 302 415 -2 1016 273 73 85 chr12 123432379 123432593 -20353862 - L2 LINE L2 0 3313 3098 2031 126 3 20 chr12 123432593 123432895 -20353560 + AluSx SINE Alu 3 299 -13 1016 273 73 85 chr12 123432895 123433467 -20352988 - L2 LINE L2 -215 3098 2549 223 305 16 55 chr12 123433624 123433752 -20352703 + MIR SINE MIR 29 151 -111 189 0 0 0 chr12 123434060 123434081 -20352374 + (T)n Simple_repeat Simple_repeat 1 21 0 239 231 165 33 chr12 123434787 123434878 -20351577 + MIR3 SINE MIR 104 206 -2 2312 96 6 10 chr12 123435717 123436029 -20350426 - AluSp SINE Alu -2 311 1 258 362 18 37 chr12 123436187 123436405 -20350050 + MIR SINE MIR 48 261 -1 251 292 9 71 chr12 123437292 123437405 -20349050 + L2 LINE L2 3163 3268 -4 423 354 56 22 chr12 123438026 123438204 -20348251 - L2 LINE L2 -5 3267 3084 436 296 24 8 chr12 123438268 123438393 -20348062 + MIR SINE MIR 106 232 -30 236 186 0 100 chr12 123438432 123438502 -20347953 - MIR SINE MIR -60 148 86 236 193 108 72 chr12 123439435 123439518 -20346937 + L1ME4a LINE L1 5959 6044 -77 417 103 0 0 chr12 123439707 123439775 -20346680 + Alu SINE Alu 245 312 0 253 274 86 8 chr12 123439909 123440026 -20346429 - MER103 DNA DNA -29 137 12 1872 225 81 30 chr12 123440121 123440152 -20346303 + MLT1H LTR MaLR 18 46 -503 5054 113 9 11 chr12 123440152 123440845 -20345610 + LTR8 LTR ERV1 1 691 0 1872 225 81 30 chr12 123440845 123441319 -20345136 + MLT1H LTR MaLR 46 549 0 2064 133 10 3 chr12 123441531 123441831 -20344624 - AluSx SINE Alu -10 302 1 296 254 35 99 chr12 123442932 123443074 -20343381 - MER113 DNA MER1_type? -46 475 343 508 222 197 95 chr12 123443075 123443507 -20342948 + MLT1D LTR MaLR 1 476 -29 673 253 62 45 chr12 123443515 123443823 -20342632 - MER113 DNA MER1_type? -208 313 1 639 289 43 35 chr12 123444079 123444335 -20342120 + MIR SINE MIR 5 262 0 274 234 106 21 chr12 123444769 123444863 -20341592 + MIR SINE MIR 14 115 -147 1050 258 21 0 chr12 123444871 123445104 -20341351 - MIR SINE MIR -4 258 21 2832 100 16 0 chr12 123445267 123445636 -20340819 + THE1C LTR MaLR 1 375 0 214 179 15 15 chr12 123445697 123445764 -20340691 + CT-rich Low_complexity Low_complexity 3 69 0 256 259 0 0 chr12 123445766 123445820 -20340635 - L2 LINE L2 -1 3271 3218 220 351 35 9 chr12 123446539 123446653 -20339802 + MIR SINE MIR 49 165 -97 435 256 148 69 chr12 123447370 123447675 -20338780 + MLT1H LTR MaLR 221 549 0 274 298 105 39 chr12 123447675 123447856 -20338599 - MIR SINE MIR -1 261 69 549 276 38 11 chr12 123447880 123448065 -20338390 + MIR SINE MIR 59 248 -14 192 155 35 17 chr12 123449503 123449561 -20336894 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 293 177 16 16 chr12 123449604 123449666 -20336789 - L1ME4a LINE L1 -91 6030 5969 280 230 5 43 chr12 123449771 123449958 -20336497 + (TA)n Simple_repeat Simple_repeat 1 180 0 1957 141 18 41 chr12 123450057 123450144 -20336311 - MER7A DNA MER2_type -2692 346 258 2110 146 0 0 chr12 123450144 123450453 -20336002 - AluSx SINE Alu -3 309 1 1957 141 18 41 chr12 123450453 123450706 -20335749 - MER7A DNA MER2_type -2780 258 16 952 134 54 0 chr12 123450734 123450883 -20335572 - Tigger3(Golem) DNA MER2_type -2740 289 133 244 188 0 0 chr12 123451035 123451083 -20335372 + L2 LINE L2 3266 3313 0 273 233 27 0 chr12 123451674 123451747 -20334708 + L2 LINE L2 2996 3070 -243 1093 229 22 92 chr12 123451790 123451932 -20334523 - L1ME1 LINE L1 -1 6165 6015 2625 71 0 0 chr12 123451932 123452242 -20334213 + AluY SINE Alu 1 310 -1 1093 229 22 92 chr12 123452242 123452554 -20333901 - L1ME1 LINE L1 -151 6015 5743 237 322 0 11 chr12 123452554 123452644 -20333811 - MIR SINE MIR -147 115 27 226 273 37 0 chr12 123452817 123452897 -20333558 - MIR SINE MIR -85 123 35 249 33 0 0 chr12 123453329 123453359 -20333096 + (CA)n Simple_repeat Simple_repeat 1 30 0 204 298 14 50 chr12 123453771 123453912 -20332543 + (CATA)n Simple_repeat Simple_repeat 1 136 0 265 318 15 15 chr12 123453983 123454115 -20332340 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 502 226 52 0 chr12 123455236 123455351 -20331104 - L2 LINE L2 -1 3312 3192 262 191 0 29 chr12 123455576 123455644 -20330811 + (TA)n Simple_repeat Simple_repeat 1 66 0 586 319 64 38 chr12 123455689 123456263 -20330192 - L1ME4a LINE L1 -287 5883 5284 196 216 0 0 chr12 123456884 123456921 -20329534 - L2 LINE L2 -15 3298 3262 238 294 127 10 chr12 123456944 123457071 -20329384 + MIR SINE MIR 34 173 -65 416 317 66 6 chr12 123457140 123457307 -20329148 - MIR SINE MIR -64 198 22 288 326 84 50 chr12 123457625 123457886 -20328569 - L2 LINE L2 0 3272 3003 379 250 0 104 chr12 123458032 123458196 -20328259 + MER5B DNA MER1_type 2 148 -30 212 0 0 35 chr12 123458851 123458880 -20327575 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2250 110 0 0 chr12 123459543 123459842 -20326613 - AluSx SINE Alu -13 299 1 283 204 0 19 chr12 123459936 123459990 -20326465 - LTR16C LTR ERVL -1 490 438 274 308 250 0 chr12 123460001 123460157 -20326298 + MIR SINE MIR 4 198 -64 237 271 29 0 chr12 123460440 123460510 -20325945 - MIR SINE MIR -112 150 79 302 211 114 61 chr12 123460750 123460864 -20325591 - LTR67 LTR ERVL -12 545 426 351 365 115 0 chr12 123461156 123461312 -20325143 + MER91A DNA MER1_type 1 174 -22 645 270 75 46 chr12 123461360 123461640 -20324815 + MLT1H1 LTR MaLR 1 240 -315 268 202 165 46 chr12 123461636 123461745 -20324710 - MLT1H1 LTR MaLR -431 124 3 * 499 248 8 39 chr12 123461758 123461887 -20324568 - L2 LINE L2 -4 3309 3185 457 250 0 0 chr12 123462974 123463074 -20323381 + MER103 DNA DNA 21 120 -46 363 305 75 29 chr12 123463198 123463372 -20323083 - MER5A DNA MER1_type -7 182 1 193 192 140 11 chr12 123463375 123463467 -20322988 - MIR SINE MIR -14 194 76 348 328 0 33 chr12 123463710 123463832 -20322623 - MIR SINE MIR -119 143 26 494 311 97 0 chr12 123463846 123464052 -20322403 + MIR SINE MIR 27 252 -10 219 333 36 14 chr12 123464204 123464342 -20322113 - L3 LINE CR1 -3 1574 1434 1741 119 4 12 chr12 123464489 123464741 -20321714 - AluSx SINE Alu -62 250 1 340 240 19 39 chr12 123464784 123464888 -20321567 - MER103 DNA DNA -57 109 8 21 0 0 0 chr12 123466333 123466354 -20320101 + AT_rich Low_complexity Low_complexity 1 21 0 1959 127 0 4 chr12 123466368 123466644 -20319811 - AluSx SINE Alu -32 280 6 785 173 58 6 chr12 123467110 123467266 -20319189 - Tigger7 DNA MER2_type -1 2490 2327 534 320 49 52 chr12 123467327 123467674 -20318781 - MLT1K LTR MaLR -58 530 185 203 291 80 114 chr12 123467682 123468032 -20318423 + L2 LINE L2 2935 3272 0 363 287 101 67 chr12 123468260 123468528 -20317927 - LTR33 LTR ERVL -7 514 238 532 195 41 84 chr12 123468572 123468703 -20317752 - LTR33 LTR ERVL -362 159 30 21 0 0 0 chr12 123468787 123468808 -20317647 + AT_rich Low_complexity Low_complexity 1 21 0 333 331 51 34 chr12 123468952 123469245 -20317210 + L3 LINE CR1 445 742 -835 358 281 35 0 chr12 123469705 123469819 -20316636 - L1MC4 LINE L1 -1 8041 7924 455 310 91 25 chr12 123471483 123471680 -20314775 - MIR SINE MIR -34 228 19 329 295 157 19 chr12 123471706 123471916 -20314539 + L3 LINE CR1 1333 1571 -6 740 276 113 47 chr12 123472043 123472868 -20313587 - L2 LINE L2 0 3313 2443 405 0 0 0 chr12 123472974 123473019 -20313436 + (CA)n Simple_repeat Simple_repeat 1 45 0 678 290 153 30 chr12 123473856 123474324 -20312131 + L2 LINE L2 2551 3067 -246 1753 209 39 64 chr12 123474414 123474854 -20311601 - MLT1D LTR MaLR 0 505 78 2198 150 28 0 chr12 123474854 123475208 -20311247 + THE1B LTR MaLR 1 364 0 1753 209 39 64 chr12 123475208 123475283 -20311172 - MLT1D LTR MaLR -427 78 3 278 288 0 58 chr12 123475312 123475451 -20311004 + L2 LINE L2 3180 3310 -3 328 241 24 12 chr12 123475470 123475553 -20310902 + LTR33 LTR ERVL 29 112 -409 267 286 0 0 chr12 123475986 123476056 -20310399 - MIR SINE MIR -18 244 175 482 70 14 0 chr12 123476213 123476284 -20310171 + (GA)n Simple_repeat Simple_repeat 1 72 0 1639 173 16 29 chr12 123476783 123477090 -20309365 - AluJb SINE Alu -9 303 1 733 274 82 43 chr12 123477217 123477545 -20308910 + LTR33 LTR ERVL 9 349 -172 307 142 9 47 chr12 123478375 123478481 -20307974 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 302 286 54 9 chr12 123478645 123478757 -20307698 - MIR SINE MIR -38 224 108 451 266 27 33 chr12 123479701 123479885 -20306570 + MER53 DNA DNA 2 184 -5 202 283 17 0 chr12 123480104 123480164 -20306291 - MIR SINE MIR -90 172 112 247 296 34 0 chr12 123480237 123480325 -20306130 - MIR SINE MIR -138 124 34 283 380 16 5 chr12 123480467 123480654 -20305801 + MIR3 SINE MIR 18 206 -2 1237 230 84 26 chr12 123481091 123481482 -20304973 - MER119 DNA MER1_type -1 582 169 423 279 49 46 chr12 123481487 123481794 -20304661 + L1MDa LINE L1 35 388 -6152 1748 123 39 3 chr12 123482236 123482520 -20303935 - L1MA5 LINE L1 -10 6290 5997 204 264 94 0 chr12 123482659 123482712 -20303743 + L2 LINE L2 3242 3299 -14 249 33 0 0 chr12 123482713 123482743 -20303712 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 289 294 10 29 chr12 123482900 123483002 -20303453 - MIR SINE MIR -104 158 59 928 213 29 38 chr12 123483252 123483492 -20302963 - L1ME2 LINE L1 -9 6155 5918 433 268 145 22 chr12 123483702 123483930 -20302525 + MIR SINE MIR 7 262 0 410 230 73 26 chr12 123484853 123484989 -20301466 - MIR SINE MIR -58 150 55 777 236 0 31 chr12 123485245 123485440 -20301015 + MER53 DNA DNA 1 189 0 932 249 187 42 chr12 123485678 123486181 -20300274 + MLT1G LTR MaLR 15 590 0 202 243 311 0 chr12 123486199 123486273 -20300182 + MIR SINE MIR 56 152 -110 * 213 322 44 27 chr12 123486272 123486385 -20300070 - MIR SINE MIR -61 147 34 459 241 143 8 chr12 123486436 123486512 -20299943 + MIR SINE MIR 112 176 -86 312 27 0 0 chr12 123486512 123486549 -20299906 + (CA)n Simple_repeat Simple_repeat 2 38 0 459 241 143 8 chr12 123486549 123486605 -20299850 + MIR SINE MIR 176 262 0 246 252 78 39 chr12 123487336 123487439 -20299016 - MIR SINE MIR -127 135 29 363 291 99 29 chr12 123487485 123487697 -20298758 + MIR SINE MIR 15 233 -29 424 295 51 26 chr12 123488121 123488277 -20298178 - MLT1I LTR MaLR -249 160 1 712 264 35 18 chr12 123488308 123488535 -20297920 - MIR SINE MIR 0 262 32 461 267 35 0 chr12 123488800 123488916 -20297539 + L2 LINE L2 3193 3312 -1 228 245 0 0 chr12 123490115 123490164 -20296291 - MIR SINE MIR -29 233 185 252 333 49 0 chr12 123490172 123490274 -20296181 - MER94 DNA DNA 0 134 28 493 254 30 10 chr12 123490297 123490444 -20296011 - MIR SINE MIR -69 193 46 462 36 0 0 chr12 123490669 123490725 -20295730 + (CA)n Simple_repeat Simple_repeat 2 57 0 576 297 18 45 chr12 123490933 123491155 -20295300 + MER102a DNA MER1_type 115 330 0 505 235 82 29 chr12 123491286 123491456 -20294999 - MER117 DNA MER1_type -10 187 9 261 228 0 0 chr12 123492134 123492213 -20294242 + (TG)n Simple_repeat Simple_repeat 1 79 0 1989 167 51 35 chr12 123492250 123492794 -20293661 - MLT2A2 LTR ERVL 0 554 1 209 357 0 32 chr12 123492867 123493021 -20293434 + (TATATG)n Simple_repeat Simple_repeat 6 154 0 222 91 0 0 chr12 123493506 123493539 -20292916 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 225 0 0 0 chr12 123493538 123493563 -20292892 + (GA)n Simple_repeat Simple_repeat 1 25 0 478 271 16 0 chr12 123493799 123493921 -20292534 + MER117 DNA MER1_type 68 191 -6 975 218 0 0 chr12 123494029 123494203 -20292252 - MER96 DNA MER1_type -1 174 1 253 212 188 0 chr12 123494570 123494655 -20291800 + MIR SINE MIR 158 258 -4 844 177 0 21 chr12 123494664 123495141 -20291314 + (CACCAT)n Simple_repeat Simple_repeat 1 466 0 189 195 0 0 chr12 123495166 123495207 -20291248 + (CAT)n Simple_repeat Simple_repeat 2 42 0 637 226 11 0 chr12 123495930 123496107 -20290348 + GA-rich Low_complexity Low_complexity 1 179 0 1438 155 3 90 chr12 123496170 123496480 -20289975 + AluSx SINE Alu 27 309 -3 2172 110 3 7 chr12 123496480 123496779 -20289676 + AluSc SINE Alu 1 298 -11 1214 289 21 19 chr12 123496796 123497263 -20289192 - L2 LINE L2 -235 3078 2622 245 295 13 13 chr12 123497298 123497447 -20289008 + (TA)n Simple_repeat Simple_repeat 1 149 0 2218 112 16 50 chr12 123497551 123497897 -20288558 + THE1C LTR MaLR 1 334 -41 2212 101 7 13 chr12 123497897 123498205 -20288250 - AluSc SINE Alu -3 306 1 2218 112 16 50 chr12 123498205 123498242 -20288213 + THE1C LTR MaLR 334 371 -4 420 269 172 14 chr12 123498849 123498994 -20287461 + MER91A DNA MER1_type 1 168 -28 1097 147 24 0 chr12 123499309 123499479 -20286976 - MER58A DNA MER1_type -8 216 43 388 329 59 0 chr12 123499607 123499777 -20286678 - MIR SINE MIR -4 258 79 181 224 20 0 chr12 123499948 123499997 -20286458 - MIR SINE MIR -145 117 68 191 211 0 0 chr12 123500476 123500514 -20285941 - MIR SINE MIR -10 252 215 1693 232 28 30 chr12 123500662 123501127 -20285328 - Charlie4a DNA MER1_type -24 484 21 210 71 0 0 chr12 123501509 123501537 -20284918 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 343 271 34 42 chr12 123501787 123501905 -20284550 - MIR3 SINE MIR -54 154 38 390 307 68 12 chr12 123502012 123502175 -20284280 - MIR SINE MIR -28 234 63 352 339 24 6 chr12 123503271 123503436 -20283019 - MIR SINE MIR -49 213 46 238 347 33 8 chr12 123503703 123503824 -20282631 - L3 LINE CR1 -69 1508 1385 257 317 16 21 chr12 123503949 123504135 -20282320 + L1MC/D LINE L1 5713 5897 -1911 633 174 0 0 chr12 123504618 123504750 -20281705 + CT-rich Low_complexity Low_complexity 1 132 0 2429 91 0 0 chr12 123504811 123505107 -20281348 + AluY SINE Alu 5 300 -11 10609 69 6 4 chr12 123505107 123507289 -20279166 + L1PA7 LINE L1 3979 6154 0 233 227 14 49 chr12 123507774 123507865 -20278590 - L1P4 LINE L1 -396 5769 5681 186 273 18 0 chr12 123508411 123508466 -20277989 + MIR SINE MIR 57 112 -150 1058 333 55 31 chr12 123508613 123509121 -20277334 + MLT1K LTR MaLR 3 522 -66 953 170 37 32 chr12 123509207 123509395 -20277060 + MER5A DNA MER1_type 1 189 0 985 278 69 29 chr12 123510071 123510587 -20275868 - L2 LINE L2 0 3313 2766 186 43 0 0 chr12 123510806 123510829 -20275626 + (CA)n Simple_repeat Simple_repeat 1 23 0 558 158 89 0 chr12 123511592 123511693 -20274762 - MER81 DNA DNA -1 113 4 246 62 0 0 chr12 123511807 123511839 -20274616 + (TC)n Simple_repeat Simple_repeat 2 33 0 296 24 24 0 chr12 123512381 123512422 -20274033 + (TG)n Simple_repeat Simple_repeat 2 43 0 228 234 6 53 chr12 123512946 123513056 -20273399 - MIR SINE MIR -67 195 94 2100 143 0 13 chr12 123513211 123513525 -20272930 + AluSx SINE Alu 3 312 0 410 248 10 10 chr12 123513538 123513639 -20272816 - MER5A DNA MER1_type -80 109 9 1046 302 82 16 chr12 123513640 123514017 -20272438 - MLT1I LTR MaLR -7 402 1 257 200 265 35 chr12 123514315 123514485 -20271970 - L1ME4a LINE L1 -198 5923 5715 2891 153 22 46 chr12 123514494 123515017 -20271438 - L1MA8 LINE L1 -172 6119 5610 2394 75 14 0 chr12 123515017 123515311 -20271144 - AluSp SINE Alu -15 298 1 2891 153 22 46 chr12 123515311 123515369 -20271086 - L1MA8 LINE L1 -681 5610 5552 467 320 63 10 chr12 123515405 123515678 -20270777 - L1ME4a LINE L1 -437 5684 5391 180 0 0 0 chr12 123515885 123515905 -20270550 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 363 289 31 19 chr12 123515941 123516100 -20270355 + L1ME LINE L1 5567 5727 -394 646 114 42 12 chr12 123516242 123516408 -20270047 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 224 208 0 14 chr12 123516439 123516511 -20269944 + (TA)n Simple_repeat Simple_repeat 2 72 0 336 191 0 0 chr12 123516520 123516609 -20269846 + GA-rich Low_complexity Low_complexity 2 90 0 314 317 8 8 chr12 123516611 123516734 -20269721 - MER5B DNA MER1_type 0 178 56 227 331 14 27 chr12 123516922 123517070 -20269385 + L2 LINE L2 2830 2975 -338 204 289 0 0 chr12 123517567 123517619 -20268836 - L2 LINE L2 -17 3296 3245 555 285 57 86 chr12 123518213 123518564 -20267891 + MER102b DNA MER1_type 1 341 0 1195 236 115 56 chr12 123518717 123518783 -20267672 + L1ME3A LINE L1 5667 5728 -442 2250 89 0 20 chr12 123518783 123519097 -20267358 + AluSg SINE Alu 5 310 0 1195 236 115 56 chr12 123519097 123519475 -20266980 + L1ME3A LINE L1 5728 6137 -33 2060 136 141 13 chr12 123520955 123521330 -20265125 + MSTA LTR MaLR 6 428 0 184 206 0 0 chr12 123521513 123521547 -20264908 + L2 LINE L2 3190 3223 -90 225 94 0 0 chr12 123521624 123521656 -20264799 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 573 338 18 0 chr12 123521812 123522034 -20264421 + MIR SINE MIR 27 252 -10 695 95 35 52 chr12 123522099 123522215 -20264240 + FLAM_C SINE Alu 13 126 -17 315 71 0 0 chr12 123522215 123522257 -20264198 + (CA)n Simple_repeat Simple_repeat 1 42 0 452 140 11 21 chr12 123522327 123522420 -20264035 - L1MA10 LINE L1 -3 6331 6240 300 258 0 0 chr12 123522565 123522631 -20263824 + MER5A DNA MER1_type 118 183 -6 287 278 22 0 chr12 123522650 123522740 -20263715 - MIR SINE MIR -122 140 49 331 246 44 18 chr12 123522764 123522878 -20263577 + MER5A DNA MER1_type 45 161 -28 3947 63 37 2 chr12 123523439 123523948 -20262507 - L1PA8 LINE L1 -3 6169 5643 1909 162 0 13 chr12 123524108 123524410 -20262045 - AluSx SINE Alu -14 298 1 764 73 0 57 chr12 123524878 123525001 -20261454 - L1PA7 LINE L1 0 6154 6039 312 231 31 88 chr12 123525475 123525635 -20260820 - MIR SINE MIR -1 261 111 865 211 127 9 chr12 123525766 123525979 -20260476 - MLT1F LTR MaLR -69 473 236 233 279 25 13 chr12 123526041 123526120 -20260335 + GA-rich Low_complexity Low_complexity 2 81 0 519 254 33 8 chr12 123526129 123526251 -20260204 - MLT1F LTR MaLR -375 167 43 907 292 59 31 chr12 123526575 123527031 -20259424 + LTR33 LTR ERVL 47 515 -6 28 0 0 0 chr12 123528066 123528094 -20258361 + AT_rich Low_complexity Low_complexity 1 28 0 307 327 16 64 chr12 123528377 123528628 -20257827 + L1ME4a LINE L1 5843 6081 -40 501 283 39 29 chr12 123528636 123528841 -20257614 - MIR SINE MIR -2 260 55 2244 115 0 0 chr12 123528843 123529139 -20257316 + AluSc SINE Alu 1 296 -13 1837 160 40 0 chr12 123529625 123529951 -20256504 + AluSx SINE Alu 1 338 0 1115 106 0 6 chr12 123529951 123530130 -20256325 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 210 259 0 0 chr12 123531171 123531229 -20255226 + (TTA)n Simple_repeat Simple_repeat 3 60 0 243 352 9 19 chr12 123531294 123531402 -20255053 + L2 LINE L2 3145 3251 -21 670 167 20 26 chr12 123531412 123531925 -20254530 + GA-rich Low_complexity Low_complexity 1 510 0 321 336 121 0 chr12 123531975 123532115 -20254340 + MIR SINE MIR 99 255 -7 1806 205 20 23 chr12 123533526 123533916 -20252539 + MLT1B LTR MaLR 2 390 0 835 220 17 6 chr12 123533981 123534154 -20252301 - MER58A DNA MER1_type -15 209 35 2459 51 0 0 chr12 123534418 123534710 -20251745 + AluY SINE Alu 19 310 -1 33 43 0 0 chr12 123534711 123534758 -20251697 + AT_rich Low_complexity Low_complexity 1 47 0 462 221 50 85 chr12 123534864 123535002 -20251453 + MIR SINE MIR 64 194 -68 1719 56 73 4 chr12 123535002 123535234 -20251221 + L1PA10 LINE L1 5911 6158 -10 462 221 50 85 chr12 123535234 123535294 -20251161 + MIR SINE MIR 194 255 -7 716 246 48 52 chr12 123535905 123536157 -20250298 - MIR SINE MIR 0 262 12 676 182 113 102 chr12 123536243 123536463 -20249992 - MER58D DNA MER1_type -2034 386 161 1908 123 145 22 chr12 123536463 123536787 -20249668 - THE1B LTR MaLR 0 364 1 676 182 113 102 chr12 123536787 123536841 -20249614 - MER58D DNA MER1_type -2259 161 109 298 295 28 5 chr12 123536987 123537094 -20249361 + MIR SINE MIR 7 117 -91 1010 217 29 5 chr12 123537096 123537303 -20249152 + MER20 DNA MER1_type 1 212 -7 209 281 123 26 chr12 123537317 123537431 -20249024 + MIR SINE MIR 117 241 -21 393 208 19 57 chr12 123537437 123537543 -20248912 - MER58D DNA MER1_type -257 129 28 190 311 57 25 chr12 123538147 123538269 -20248186 - MIR SINE MIR -109 153 28 1300 269 58 24 chr12 123538397 123539048 -20247407 - L1M1 LINE L1 -4166 3400 2628 62 0 0 0 chr12 123539078 123539140 -20247315 + GC_rich Low_complexity Low_complexity 1 62 0 284 162 0 0 chr12 123539256 123539324 -20247131 + G-rich Low_complexity Low_complexity 1 68 0 22 56 0 0 chr12 123539325 123539361 -20247094 + GC_rich Low_complexity Low_complexity 1 36 0 221 336 14 0 chr12 123540147 123540290 -20246165 + (TG)n Simple_repeat Simple_repeat 2 146 0 270 299 11 17 chr12 123540347 123540524 -20245931 + T-rich Low_complexity Low_complexity 1 176 0 * 478 290 11 0 chr12 123540404 123540580 -20245875 + (TG)n Simple_repeat Simple_repeat 2 179 0 547 220 66 29 chr12 123541641 123541840 -20244615 - MIR SINE MIR -3 259 50 276 358 8 0 chr12 123542043 123542163 -20244292 - MIR SINE MIR -50 212 92 525 190 43 79 chr12 123542254 123542458 -20243997 - MER58 DNA MER1_type -15 2405 5 228 256 17 51 chr12 123543324 123543441 -20243014 + MIR SINE MIR 31 143 -65 2297 116 0 0 chr12 123543795 123544097 -20242358 + AluSc SINE Alu 1 302 -7 720 261 15 5 chr12 123544253 123544452 -20242003 + MIR SINE MIR 8 208 -54 540 287 85 78 chr12 123545613 123545920 -20240535 + LTR33A LTR ERVL 2 310 -213 1155 252 18 53 chr12 123546112 123546449 -20240006 - LTR16A LTR ERVL 0 450 126 696 298 66 60 chr12 123547284 123547650 -20238805 - MLT1J LTR MaLR -143 368 1 222 322 92 0 chr12 123547658 123547745 -20238710 - MIR SINE MIR -51 211 117 360 0 0 0 chr12 123548411 123548451 -20238004 + (TG)n Simple_repeat Simple_repeat 2 41 0 490 263 8 8 chr12 123548769 123548887 -20237568 + MLT1K LTR MaLR 166 283 -305 945 249 73 75 chr12 123548988 123549346 -20237109 + LTR16C LTR ERVL 133 489 -2 451 252 8 55 chr12 123549362 123549489 -20236966 + MLT1K LTR MaLR 355 475 -113 312 246 59 17 chr12 123549988 123550106 -20236349 - MIR SINE MIR -34 228 106 362 326 58 11 chr12 123550125 123550315 -20236140 + MIR SINE MIR 39 237 -25 225 0 0 0 chr12 123550324 123550349 -20236106 + (CAT)n Simple_repeat Simple_repeat 2 26 0 497 283 46 17 chr12 123550471 123550644 -20235811 - MIR SINE MIR -74 188 11 201 319 62 0 chr12 123551282 123551395 -20235060 + MIR SINE MIR 143 262 0 271 283 121 10 chr12 123551473 123551572 -20234883 - L2 LINE L2 -15 3298 3189 409 278 0 0 chr12 123551572 123551669 -20234786 + MER3 DNA MER1_type 1 97 -112 632 146 83 42 chr12 123551689 123551833 -20234622 + MER3 DNA MER1_type 59 208 -1 295 163 0 0 chr12 123551791 123551840 -20234615 - MER3 DNA MER1_type -119 90 42 * 547 300 115 36 chr12 123551974 123552387 -20234068 - L2 LINE L2 -267 3046 2594 253 278 58 52 chr12 123553449 123553622 -20232833 + MIR SINE MIR 81 254 -8 2242 117 0 0 chr12 123553659 123553958 -20232497 + AluSx SINE Alu 1 299 -13 364 344 0 0 chr12 123554153 123554284 -20232171 + MIR SINE MIR 45 175 -87 990 258 30 63 chr12 123554507 123554906 -20231549 - L2 LINE L2 -3 3310 2925 628 299 39 30 chr12 123555791 123556022 -20230433 - MIR SINE MIR -21 241 9 1006 216 0 47 chr12 123556067 123556299 -20230156 - MER58A DNA MER1_type -3 221 1 201 154 0 0 chr12 123556453 123556492 -20229963 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 835 236 74 0 chr12 123556541 123556770 -20229685 - LTR16C LTR ERVL -2 489 244 1029 215 51 0 chr12 123556912 123557107 -20229348 + MER58A DNA MER1_type 20 224 0 2602 176 38 4 chr12 123557271 123557772 -20228683 - L1MB1 LINE L1 0 6168 5651 2169 146 52 13 chr12 123557773 123558130 -20228325 + L1MC/D LINE L1 5110 5498 -715 234 0 0 0 chr12 123558130 123558156 -20228299 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2169 146 52 13 chr12 123558156 123558349 -20228106 + L1MC/D LINE L1 5498 5682 -531 1218 159 10 24 chr12 123558407 123558615 -20227840 - AluJo SINE Alu -22 290 86 2139 135 39 34 chr12 123558776 123559132 -20227323 - THE1B LTR MaLR 0 364 7 2024 156 0 9 chr12 123559418 123559733 -20226722 + AluJb SINE Alu 1 312 0 207 100 0 0 chr12 123559752 123559782 -20226673 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 470 314 93 10 chr12 123560136 123560330 -20226125 + MIR SINE MIR 21 230 -32 851 288 60 7 chr12 123560354 123560639 -20225816 - MLT1L LTR MaLR 0 615 316 282 29 0 0 chr12 123561557 123561592 -20224863 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 423 290 25 19 chr12 123561592 123561754 -20224701 - L2 LINE L2 -13 3300 3138 442 284 78 28 chr12 123561810 123561836 -20224619 - MIR SINE MIR -5 257 234 1752 213 60 23 chr12 123561836 123562235 -20224220 + MLT2D LTR ERVL 1 414 0 442 284 78 28 chr12 123562235 123562426 -20224029 - MIR SINE MIR -28 234 29 458 307 14 42 chr12 123562824 123563039 -20223416 + MIR SINE MIR 36 244 -18 2846 81 0 18 chr12 123563040 123563423 -20223032 + L1PB1 LINE L1 5774 6149 -2 318 0 15 75 chr12 123563444 123563511 -20222944 + (TA)n Simple_repeat Simple_repeat 1 63 0 258 283 0 0 chr12 123564569 123564639 -20221816 - MIR SINE MIR -62 146 85 646 175 16 20 chr12 123564654 123564909 -20221546 + GA-rich Low_complexity Low_complexity 1 254 0 507 318 110 25 chr12 123564932 123565259 -20221196 - MLT1I LTR MaLR 0 409 55 239 224 41 128 chr12 123565720 123565831 -20220624 + MER113 DNA MER1_type? 24 112 -409 2081 161 46 0 chr12 123565831 123566203 -20220252 - MLT1B LTR MaLR -1 389 1 239 224 41 128 chr12 123566203 123566287 -20220168 + MER113 DNA MER1_type? 112 202 -319 215 192 77 19 chr12 123566287 123566339 -20220116 + L2 LINE L2 3257 3311 -2 535 283 75 9 chr12 123566350 123566576 -20219879 + MER113 DNA MER1_type? 204 444 -77 222 359 0 34 chr12 123566769 123566886 -20219569 + L2 LINE L2 2900 3012 -260 2265 90 0 46 chr12 123566909 123567232 -20219223 + AluY SINE Alu 1 308 -3 226 319 14 0 chr12 123567693 123567762 -20218693 + MIR SINE MIR 2 71 -191 1272 257 41 57 chr12 123567982 123568174 -20218281 - L2 LINE L2 -188 3125 2932 1487 192 51 51 chr12 123568174 123568428 -20218027 + MLT1B LTR MaLR 1 257 -133 2096 120 21 0 chr12 123568428 123568712 -20217743 + AluSc SINE Alu 1 290 -19 1487 192 51 51 chr12 123568712 123568847 -20217608 + MLT1B LTR MaLR 256 390 0 1272 257 41 57 chr12 123568847 123569342 -20217113 - L2 LINE L2 -381 2932 2425 899 207 39 6 chr12 123569344 123569523 -20216932 + MER20 DNA MER1_type 32 216 -3 615 230 73 17 chr12 123569627 123569805 -20216650 + MIR SINE MIR 75 262 0 186 343 27 0 chr12 123569821 123569894 -20216561 + L2 LINE L2 3229 3303 -10 537 119 30 0 chr12 123569931 123570032 -20216423 + CT-rich Low_complexity Low_complexity 1 104 0 2201 110 13 16 chr12 123570032 123570340 -20216115 - AluSg SINE Alu -3 307 1 218 315 68 0 chr12 123571212 123571285 -20215170 + L2 LINE L2 3193 3270 -2 234 0 0 0 chr12 123571483 123571509 -20214946 + (CA)n Simple_repeat Simple_repeat 2 27 0 357 284 19 52 chr12 123571756 123571911 -20214544 - MLT1L LTR MaLR -329 286 137 1732 191 0 7 chr12 123571920 123572219 -20214236 - AluJb SINE Alu -15 297 1 300 291 0 0 chr12 123572408 123572487 -20213968 + (CA)n Simple_repeat Simple_repeat 2 80 0 44125 29 23 1 chr12 123572703 123578724 -20207731 + L1PA3 LINE L1 1 6155 0 907 191 13 50 chr12 123578976 123579355 -20207100 - MER63B DNA MER1_type -2 434 6 354 286 36 0 chr12 123579467 123579579 -20206876 + MIR SINE MIR 141 256 -6 337 214 0 56 chr12 123579655 123579744 -20206711 + MLT1L LTR MaLR 3 86 -529 1630 185 29 26 chr12 123579930 123580270 -20206185 - MLT1A1 LTR MaLR -13 352 12 3212 129 31 2 chr12 123580415 123581074 -20205381 - L1MA8 LINE L1 -522 5769 5095 2607 150 4 47 chr12 123581074 123581597 -20204858 + L1MA8 LINE L1 5783 6287 -4 288 213 40 13 chr12 123581611 123581686 -20204769 + MLT1J LTR MaLR 435 511 0 341 281 0 0 chr12 123581770 123581852 -20204603 + MER5A DNA MER1_type 18 99 -90 180 0 0 0 chr12 123582027 123582047 -20204408 + (T)n Simple_repeat Simple_repeat 1 20 0 239 356 79 0 chr12 123582977 123583078 -20203377 + L2 LINE L2 3187 3295 -18 573 284 6 12 chr12 123583101 123583263 -20203192 - MIR SINE MIR -76 186 26 426 313 8 8 chr12 123583712 123583846 -20202609 + MER5A DNA MER1_type 55 188 -1 2165 143 6 26 chr12 123584129 123584472 -20201983 - MER1B DNA MER1_type -1 336 1 224 283 0 17 chr12 123584604 123584664 -20201791 + GA-rich Low_complexity Low_complexity 3 61 0 333 68 0 0 chr12 123584708 123584752 -20201703 + (CA)n Simple_repeat Simple_repeat 2 45 0 207 239 141 0 chr12 123584831 123584902 -20201553 + MIR SINE MIR 84 164 -98 349 255 0 11 chr12 123585411 123585505 -20200950 + L2 LINE L2 3205 3297 -16 250 189 108 14 chr12 123585505 123585579 -20200876 + L1MC3 LINE L1 7009 7089 -696 249 317 20 10 chr12 123585686 123585787 -20200668 - L2 LINE L2 -2 3311 3210 549 311 105 9 chr12 123586249 123586468 -20199987 + MIR SINE MIR 13 252 -10 2313 115 0 0 chr12 123587431 123587743 -20198712 + AluSx SINE Alu 1 312 0 512 216 173 0 chr12 123588253 123588392 -20198063 - MER5A DNA MER1_type -6 183 21 835 298 57 52 chr12 123589284 123589761 -20196694 + L2 LINE L2 2835 3313 0 335 307 39 78 chr12 123589762 123589967 -20196488 + MLT1K LTR MaLR 185 381 -207 1004 232 40 55 chr12 123590237 123590669 -20195786 + MLT1D LTR MaLR 44 505 0 510 331 31 11 chr12 123590741 123590966 -20195489 + MIR SINE MIR 18 243 -19 4627 97 6 1 chr12 123591979 123592626 -20193829 - L1PB2 LINE L1 0 6151 5502 212 306 208 7 chr12 123592967 123593111 -20193344 + MIR SINE MIR 16 188 -74 344 183 0 28 chr12 123593951 123594022 -20192433 - L2 LINE L2 -59 3254 3186 230 345 69 17 chr12 123594120 123594236 -20192219 + MER91C DNA MER1_type 19 140 0 760 178 0 0 chr12 123594571 123594700 -20191755 - FLAM_A SINE Alu -2 131 3 204 139 28 0 chr12 123594751 123594787 -20191668 + CT-rich Low_complexity Low_complexity 1 37 0 771 292 71 58 chr12 123595083 123595518 -20190937 - MLT1J LTR MaLR 0 511 71 285 256 64 45 chr12 123595933 123596089 -20190366 - MIR SINE MIR -71 191 33 218 229 0 16 chr12 123596169 123596230 -20190225 + T-rich Low_complexity Low_complexity 6 65 0 198 287 107 16 chr12 123596278 123596400 -20190055 + L2 LINE L2 3117 3249 -23 552 321 42 11 chr12 123596832 123597022 -20189433 - MIR SINE MIR -62 200 5 1843 194 0 0 chr12 123597480 123597784 -20188671 - AluJo SINE Alu -8 304 1 254 290 84 4 chr12 123598201 123598363 -20188092 + MIR SINE MIR 69 248 -14 235 300 43 0 chr12 123599365 123599435 -20187020 + MIR3 SINE MIR 83 155 -53 430 322 0 20 chr12 123599490 123599639 -20186816 - MER117 DNA MER1_type -50 147 2 252 0 0 0 chr12 123600076 123600104 -20186351 + (T)n Simple_repeat Simple_repeat 1 28 0 215 302 0 0 chr12 123600715 123600768 -20185687 + L2 LINE L2 3199 3251 -21 220 309 0 0 chr12 123600782 123600837 -20185618 + L2 LINE L2 2608 2662 -652 204 97 0 0 chr12 123600860 123600891 -20185564 + (ATG)n Simple_repeat Simple_repeat 2 32 0 487 262 181 5 chr12 123600913 123601123 -20185332 - MIR SINE MIR -15 247 1 289 261 23 23 chr12 123601355 123601443 -20185012 + MIR SINE MIR 32 119 -89 252 208 0 0 chr12 123602113 123602161 -20184294 + L2 LINE L2 3265 3312 -1 594 283 39 104 chr12 123602338 123602702 -20183753 - MLT1I LTR MaLR -3 406 67 3259 194 23 22 chr12 123603250 123604006 -20182449 + L1MA10 LINE L1 4537 5280 -866 1075 107 17 0 chr12 123604018 123604083 -20182372 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1075 107 17 0 chr12 123604083 123604260 -20182195 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4699 185 55 29 chr12 123604363 123604645 -20181810 + L1MA10 LINE L1 5321 5594 -740 1846 164 7 0 chr12 123604645 123604957 -20181498 + AluSx SINE Alu 1 314 0 4699 185 55 29 chr12 123604957 123605660 -20180795 + L1MA10 LINE L1 5594 6332 -2 1968 138 7 0 chr12 123605895 123606203 -20180252 - AluSx SINE Alu 0 310 1 5370 50 3 2 chr12 123606333 123606954 -20179501 + L1PA7 LINE L1 5514 6135 -19 934 200 56 6 chr12 123607446 123607626 -20178829 + MER5A DNA MER1_type 1 189 0 491 281 138 24 chr12 123607637 123607804 -20178651 + MER5A DNA MER1_type 4 189 0 181 273 0 0 chr12 123607812 123607856 -20178599 + MER5B DNA MER1_type 1 44 -134 * 474 235 20 10 chr12 123607853 123607951 -20178504 - MER5B DNA MER1_type -77 101 3 2091 141 0 3 chr12 123609259 123609571 -20176884 - AluSx SINE Alu -1 311 1 262 120 100 20 chr12 123610322 123610372 -20176083 + MER117 DNA MER1_type 61 114 -83 882 149 6 11 chr12 123610443 123610617 -20175838 + GA-rich Low_complexity Low_complexity 1 173 0 707 178 20 16 chr12 123610640 123611170 -20175285 + GA-rich Low_complexity Low_complexity 1 531 0 694 259 17 81 chr12 123611412 123611546 -20174909 + L1MC4 LINE L1 7574 7680 -362 1522 153 4 12 chr12 123611546 123611788 -20174667 - AluJo SINE Alu -67 245 6 694 259 17 81 chr12 123611788 123611950 -20174505 + L1MC4 LINE L1 7680 7851 -191 422 327 50 15 chr12 123613478 123613680 -20172775 + MIR SINE MIR 40 248 -14 1914 153 0 13 chr12 123613904 123614205 -20172250 - AluSx SINE Alu -15 297 1 766 281 20 29 chr12 123614208 123614454 -20172001 - MIR SINE MIR -10 252 9 881 249 0 0 chr12 123614561 123614750 -20171705 - MER5A DNA MER1_type 0 189 1 228 97 0 0 chr12 123614891 123614922 -20171533 + HSMAR2 DNA Mariner 9 39 -1263 2943 68 2 51 chr12 123615094 123615488 -20170967 - THE1C LTR MaLR 0 375 1 1054 188 21 13 chr12 123615702 123615936 -20170519 - L1 LINE L1 -1512 4634 4399 475 228 85 43 chr12 123615936 123616147 -20170308 - L1M4 LINE L1 -1624 4522 4303 * 4412 179 40 16 chr12 123616139 123616225 -20170230 - L1 LINE L1 -1737 4409 4327 1466 172 46 53 chr12 123616225 123616528 -20169927 - AluJo SINE Alu -9 303 3 4412 179 40 16 chr12 123616528 123617331 -20169124 - L1 LINE L1 -1819 4327 3498 1410 200 17 0 chr12 123617334 123617629 -20168826 + L1MA10 LINE L1 5076 5375 -771 7365 146 13 4 chr12 123617641 123618785 -20167670 + HSMAR2 DNA Mariner 10 1163 -139 256 299 18 44 chr12 123618793 123619050 -20167405 + CT-rich Low_complexity Low_complexity 1 250 0 777 73 0 65 chr12 123619235 123619359 -20167096 - L1PA7 LINE L1 0 6154 6039 1485 122 7 48 chr12 123619599 123619870 -20166585 + HSMAR2 DNA Mariner 1042 1301 -1 2230 188 77 10 chr12 123619872 123620585 -20165870 + L1MA10 LINE L1 5381 6125 -58 300 27 0 0 chr12 123620585 123620622 -20165833 + (CA)n Simple_repeat Simple_repeat 2 38 0 2230 188 77 10 chr12 123620622 123620663 -20165792 + L1MA10 LINE L1 6125 6162 -21 394 350 0 0 chr12 123621630 123621750 -20164705 + MER5B DNA MER1_type 1 120 -58 904 195 6 0 chr12 123622163 123622322 -20164133 + AluJb SINE Alu 145 304 -8 1058 166 28 0 chr12 123622802 123622983 -20163472 - MER5A DNA MER1_type -3 186 1 310 298 11 34 chr12 123623055 123623233 -20163222 + GA-rich Low_complexity Low_complexity 4 177 0 285 289 9 35 chr12 123624269 123624383 -20162072 - MIR3 SINE MIR -16 192 82 2202 165 17 0 chr12 123624621 123624966 -20161489 - L1PA16 LINE L1 -7 6159 5809 404 281 75 14 chr12 123625081 123625227 -20161228 - MIR SINE MIR -20 242 88 690 231 111 20 chr12 123625391 123625590 -20160865 - MER58A DNA MER1_type 0 224 8 356 297 59 8 chr12 123625748 123625866 -20160589 - MER5A DNA MER1_type 0 189 66 342 67 0 0 chr12 123625866 123625911 -20160544 + (A)n Simple_repeat Simple_repeat 1 45 0 245 95 0 24 chr12 123625952 123625994 -20160461 + (GAA)n Simple_repeat Simple_repeat 2 42 0 210 71 0 0 chr12 123626027 123626055 -20160400 + (A)n Simple_repeat Simple_repeat 1 28 0 181 103 26 103 chr12 123626310 123626349 -20160106 - L2 LINE L2 -11 3302 3267 3675 128 8 85 chr12 123627241 123627919 -20158536 - L1MA9 LINE L1 -398 5914 5275 2205 95 3 0 chr12 123627919 123628223 -20158232 - AluSq SINE Alu 0 305 1 3675 128 8 85 chr12 123628223 123628267 -20158188 - L1MA9 LINE L1 -1037 5275 5229 333 276 189 8 chr12 123628604 123628858 -20157597 + L1M4 LINE L1 3681 3980 -2166 226 191 0 0 chr12 123628975 123629017 -20157438 - MADE1 DNA Mariner -37 43 2 409 311 106 43 chr12 123629020 123629824 -20156631 + L1M4 LINE L1 4081 4934 -1212 488 267 142 23 chr12 123630196 123630372 -20156083 + MIR SINE MIR 2 198 -64 422 232 80 58 chr12 123630394 123630446 -20156009 + MIR SINE MIR 113 162 -100 2503 121 3 24 chr12 123630446 123630818 -20155637 - THE1B LTR MaLR 0 364 1 422 232 80 58 chr12 123630818 123630903 -20155552 + MIR SINE MIR 162 253 -9 261 0 0 0 chr12 123632544 123632573 -20153882 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 0 40 0 chr12 123632573 123632598 -20153857 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2876 93 3 0 chr12 123632861 123633215 -20153240 + THE1A LTR MaLR 1 355 0 12645 95 2 1 chr12 123633215 123634794 -20151661 + THE1A-int LTR MaLR 1 1580 0 2844 96 3 0 chr12 123634795 123635148 -20151307 + THE1A LTR MaLR 2 355 0 794 283 91 19 chr12 123635414 123635721 -20150734 - L3 LINE CR1 -6 1571 1243 282 308 45 32 chr12 123635724 123635880 -20150575 - MIR SINE MIR -60 202 45 214 267 18 40 chr12 123636027 123636150 -20150305 + GA-rich Low_complexity Low_complexity 1 120 0 1603 197 16 7 chr12 123636554 123636863 -20149592 - AluJb SINE Alu 0 312 1 503 235 45 56 chr12 123637462 123637641 -20148814 + L1ME4a LINE L1 5943 6119 -2 1288 283 85 12 chr12 123638643 123639127 -20147328 + LTR33 LTR ERVL 1 519 -2 526 286 121 18 chr12 123639129 123639353 -20147102 + MIR SINE MIR 8 254 -8 212 222 127 56 chr12 123639744 123639870 -20146585 + L2 LINE L2 3138 3272 0 1205 177 87 32 chr12 123639950 123640227 -20146228 + AluJo SINE Alu 1 292 -20 2045 108 3 11 chr12 123640229 123640535 -20145920 + AluSc SINE Alu 1 304 0 850 277 109 43 chr12 123640721 123641143 -20145312 - MLT1J2 LTR MaLR 0 450 1 951 137 0 16 chr12 123641498 123641681 -20144774 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 532 224 0 0 chr12 123641760 123641858 -20144597 + MER81 DNA DNA 17 114 0 759 261 20 10 chr12 123641878 123642081 -20144374 + MIR SINE MIR 49 253 -9 466 235 4 2 chr12 123642855 123642968 -20143487 - MIR SINE MIR -45 163 49 1051 216 9 18 chr12 123643108 123643326 -20143129 - MER20 DNA MER1_type 0 219 4 1826 144 10 28 chr12 123643367 123643658 -20142797 + AluJo SINE Alu 4 289 -23 29 0 0 0 chr12 123643658 123643687 -20142768 + AT_rich Low_complexity Low_complexity 1 29 0 560 245 122 20 chr12 123643687 123643883 -20142572 - MIR SINE MIR 0 262 47 666 265 19 2 chr12 123644906 123645276 -20141179 - L1ME3A LINE L1 -4 6160 5728 758 276 80 11 chr12 123645596 123645860 -20140595 - L1MC4a LINE L1 -1909 5899 5618 497 277 107 0 chr12 123646215 123646374 -20140081 - MIR SINE MIR -4 258 83 259 375 0 10 chr12 123646399 123646495 -20139960 - L2 LINE L2 -62 3210 3116 369 235 12 0 chr12 123646758 123646843 -20139612 - MIR SINE MIR -78 130 45 212 234 0 21 chr12 123647744 123647791 -20138664 + GA-rich Low_complexity Low_complexity 2 47 0 182 118 29 0 chr12 123648361 123648395 -20138060 + T-rich Low_complexity Low_complexity 2 36 0 515 299 76 49 chr12 123648468 123648876 -20137579 - MLT1L LTR MaLR -4 611 193 674 343 4 4 chr12 123649282 123649521 -20136934 + MIR SINE MIR 12 250 -12 1019 228 64 0 chr12 123650213 123650446 -20136009 + MIR SINE MIR 14 261 -1 298 278 87 24 chr12 123650545 123650671 -20135784 - MIR SINE MIR -120 142 9 216 0 0 0 chr12 123651380 123651404 -20135051 + (A)n Simple_repeat Simple_repeat 1 24 0 1585 178 45 14 chr12 123651617 123651903 -20134552 + AluJo SINE Alu 1 295 -17 310 261 149 50 chr12 123651907 123652068 -20134387 - MIR SINE MIR -85 177 1 508 299 47 31 chr12 123652169 123652428 -20134027 - MIR SINE MIR 0 262 7 207 268 73 0 chr12 123652425 123652507 -20133948 + L2 LINE L2 3144 3231 -41 * 1135 253 117 5 chr12 123652772 123653167 -20133288 + L2 LINE L2 2301 2739 -575 746 257 121 51 chr12 123653173 123653546 -20132909 + L2 LINE L2 2915 3313 0 713 192 126 28 chr12 123653611 123653740 -20132715 + MER3 DNA MER1_type 5 120 -89 520 81 27 0 chr12 123653740 123653814 -20132641 - L1MC2 LINE L1 0 6344 6269 713 192 126 28 chr12 123653814 123653826 -20132629 + MER3 DNA MER1_type 120 129 -80 198 71 0 0 chr12 123653826 123653854 -20132601 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 713 192 126 28 chr12 123653854 123653893 -20132562 + MER3 DNA MER1_type 129 204 -5 228 35 0 0 chr12 123654400 123654429 -20132026 + (TC)n Simple_repeat Simple_repeat 2 30 0 219 189 0 19 chr12 123654429 123654482 -20131973 + (TA)n Simple_repeat Simple_repeat 2 53 0 218 203 0 16 chr12 123654483 123654547 -20131908 + (CA)n Simple_repeat Simple_repeat 1 63 0 366 148 32 78 chr12 123655204 123655258 -20131197 - LTR50 LTR ERVL -2 793 738 2437 131 120 5 chr12 123655258 123655641 -20130814 + MSTA LTR MaLR 1 427 -1 366 148 32 78 chr12 123655641 123655688 -20130767 - LTR50 LTR ERVL -57 738 424 303 327 45 30 chr12 123655852 123656051 -20130404 - LTR50 LTR ERVL -123 672 471 328 235 0 0 chr12 123656224 123656292 -20130163 - LTR50 LTR ERVL -715 80 13 406 314 88 5 chr12 123656293 123656497 -20129958 - L1ME LINE L1 -325 5796 5576 443 268 58 42 chr12 123656757 123656947 -20129508 + MIR SINE MIR 8 200 -62 314 336 34 8 chr12 123657580 123657699 -20128756 + L1MA9 LINE L1 1695 1816 -5680 2450 257 51 51 chr12 123657793 123659585 -20126870 + L1MA9 LINE L1 2017 3520 -4045 * 4176 194 22 59 chr12 123659557 123661240 -20125215 + L1MA9 LINE L1 5662 7279 -452 231 378 0 0 chr12 123661348 123661422 -20125033 + L2 LINE L2 3170 3243 -29 315 0 0 0 chr12 123661455 123661490 -20124965 + (TGAG)n Simple_repeat Simple_repeat 3 37 0 423 56 0 0 chr12 123661491 123661545 -20124910 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 219 304 11 22 chr12 123661870 123661962 -20124493 + GA-rich Low_complexity Low_complexity 3 93 0 458 252 126 8 chr12 123662019 123662138 -20124317 - L2 LINE L2 0 3313 3181 440 18 18 0 chr12 123662403 123662460 -20123995 + (CA)n Simple_repeat Simple_repeat 1 58 0 462 294 162 49 chr12 123662917 123663137 -20123318 + L2 LINE L2 2491 2685 -587 3027 89 70 9 chr12 123663137 123663564 -20122891 - L1PA10 LINE L1 0 6168 5716 462 294 162 49 chr12 123663564 123663777 -20122678 + L2 LINE L2 2685 2984 -288 2420 219 70 33 chr12 123663777 123664349 -20122106 - MLT1E LTR MaLR 0 593 1 462 294 162 49 chr12 123664349 123664425 -20122030 + L2 LINE L2 2984 3050 -222 212 194 0 0 chr12 123664977 123665013 -20121442 - L2 LINE L2 -21 3251 3216 353 307 127 21 chr12 123665101 123665290 -20121165 + MER63A DNA MER1_type 1 209 -1 202 204 20 20 chr12 123665413 123665462 -20120993 + L2 LINE L2 3213 3261 -11 390 307 20 122 chr12 123665912 123665993 -20120462 - L2 LINE L2 -1 3271 3183 4014 132 8 13 chr12 123665993 123666609 -20119846 + L1MA4 LINE L1 5679 6291 -9 390 307 20 122 chr12 123666609 123666823 -20119632 - L2 LINE L2 -89 3183 3006 1460 252 128 19 chr12 123666937 123667414 -20119041 - MLT1H1 LTR MaLR -7 548 20 901 242 21 62 chr12 123667451 123667740 -20118715 - L1MD2 LINE L1 -42 6317 6041 226 311 48 39 chr12 123667783 123667826 -20118629 + MIR SINE MIR 41 82 -180 1999 127 14 0 chr12 123667826 123668118 -20118337 + AluY SINE Alu 1 296 -15 226 311 48 39 chr12 123668118 123668177 -20118278 + MIR SINE MIR 82 144 -118 248 284 78 0 chr12 123668293 123668395 -20118060 + MIR SINE MIR 119 228 -34 25 0 0 0 chr12 123668802 123668827 -20117628 + AT_rich Low_complexity Low_complexity 1 25 0 421 238 181 25 chr12 123669673 123669833 -20116622 - MER5A DNA MER1_type -1 188 4 1968 198 107 34 chr12 123670069 123670538 -20115917 - MLT1D LTR MaLR 0 505 3 864 167 73 57 chr12 123670707 123670899 -20115556 + MLT1G1 LTR MaLR 1 195 -400 819 251 78 6 chr12 123670900 123671093 -20115362 + MLT1G LTR MaLR 91 301 -289 254 261 72 27 chr12 123671138 123671249 -20115206 - L2 LINE L2 -322 2991 2876 675 211 70 23 chr12 123671313 123671484 -20114971 + MLT1G LTR MaLR 412 590 0 244 293 52 26 chr12 123671766 123671882 -20114573 - MLT1K LTR MaLR -287 301 183 557 286 18 51 chr12 123672492 123672709 -20113746 + MIR SINE MIR 20 229 -33 1880 268 82 34 chr12 123672845 123673006 -20113449 + L1ME3A LINE L1 4991 5143 -1027 420 20 0 0 chr12 123673006 123673055 -20113400 + (TG)n Simple_repeat Simple_repeat 2 50 0 1880 268 82 34 chr12 123673055 123674021 -20112434 + L1ME3A LINE L1 5143 6170 0 744 255 59 5 chr12 123674942 123675146 -20111309 + MIR SINE MIR 47 261 -1 1414 229 113 82 chr12 123675235 123675276 -20111179 - MLT1G LTR MaLR -11 579 541 1290 165 79 29 chr12 123675276 123675555 -20110900 + AluJb SINE Alu 3 295 -17 1414 229 113 82 chr12 123675555 123676062 -20110393 - MLT1G LTR MaLR -49 541 14 465 295 42 46 chr12 123676083 123676320 -20110135 - MIR SINE MIR -21 241 6 633 120 47 0 chr12 123676335 123676485 -20109970 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 234 326 0 20 chr12 123676758 123676856 -20109599 - MIR3 SINE MIR -9 199 104 2089 157 39 36 chr12 123677041 123677589 -20108866 + MLT2A2 LTR ERVL 1 554 0 249 233 17 0 chr12 123677950 123678010 -20108445 + (CAATA)n Simple_repeat Simple_repeat 4 64 0 499 296 91 5 chr12 123678758 123678957 -20107498 - MIR SINE MIR -44 218 3 297 238 0 0 chr12 123679020 123679083 -20107372 - L2 LINE L2 0 3272 3210 300 320 95 62 chr12 123679149 123679474 -20106981 - LTR16C LTR ERVL 0 491 156 27 0 0 0 chr12 123679741 123679768 -20106687 + AT_rich Low_complexity Low_complexity 1 27 0 297 298 42 56 chr12 123679831 123680046 -20106409 - MIR SINE MIR -30 232 21 543 248 26 0 chr12 123680296 123680409 -20106046 + MIR SINE MIR 70 185 -77 183 380 54 31 chr12 123680601 123680730 -20105725 + L2 LINE L2 2855 2986 -286 * 192 282 48 68 chr12 123680717 123680820 -20105635 - L2 LINE L2 -3 3269 3169 282 291 87 35 chr12 123680859 123681031 -20105424 + MER117 DNA MER1_type 17 197 0 231 329 66 0 chr12 123681193 123681269 -20105186 + L2 LINE L2 3148 3228 -44 186 167 0 0 chr12 123681339 123681375 -20105080 + (TGG)n Simple_repeat Simple_repeat 1 36 0 370 270 8 16 chr12 123681414 123681540 -20104915 + (ATGGTG)n Simple_repeat Simple_repeat 1 125 0 366 252 26 5 chr12 123681848 123681988 -20104467 - MIR SINE MIR -16 246 104 21 100 0 0 chr12 123682754 123682824 -20103631 + AT_rich Low_complexity Low_complexity 1 70 0 561 304 79 24 chr12 123682863 123683281 -20103174 - L1ME4a LINE L1 -81 6040 5600 187 301 31 83 chr12 123683682 123683875 -20102580 - L2 LINE L2 -181 3091 2909 419 282 61 37 chr12 123683916 123684000 -20102455 + MIR SINE MIR 92 172 -90 1433 165 63 107 chr12 123684000 123684382 -20102073 - MLT1A1 LTR MaLR 0 365 1 419 282 61 37 chr12 123684382 123684460 -20101995 + MIR SINE MIR 172 258 -4 186 103 0 0 chr12 123684534 123684563 -20101892 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 373 233 21 39 chr12 123684905 123685076 -20101379 + MIR SINE MIR 1 241 -21 276 315 33 0 chr12 123685496 123685588 -20100867 - MIR SINE MIR -71 191 97 470 338 103 0 chr12 123685610 123685814 -20100641 + MIR SINE MIR 15 239 -23 1957 242 25 37 chr12 123686584 123687179 -20099276 - L1ME3A LINE L1 -1 6169 5582 588 306 25 17 chr12 123687214 123687465 -20098990 - MIR SINE MIR 0 262 10 518 278 117 82 chr12 123687563 123687880 -20098575 + L2 LINE L2 2945 3272 0 217 294 109 11 chr12 123688321 123688413 -20098042 + L2 LINE L2 3116 3216 -56 * 487 294 62 102 chr12 123688402 123688922 -20097533 + L2 LINE L2 2811 3309 -4 1484 296 90 12 chr12 123689046 123689894 -20096561 + L2 LINE L2 2392 3300 -13 553 185 34 13 chr12 123689903 123690145 -20096310 + GA-rich Low_complexity Low_complexity 1 247 0 677 174 18 12 chr12 123690156 123690323 -20096132 + GA-rich Low_complexity Low_complexity 3 170 0 252 197 16 16 chr12 123690323 123690384 -20096071 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 29 70 0 0 chr12 123691035 123691092 -20095363 + AT_rich Low_complexity Low_complexity 1 57 0 381 256 0 12 chr12 123691171 123691257 -20095198 - L2 LINE L2 0 3313 3229 463 313 17 6 chr12 123691373 123691552 -20094903 - L1MC4a LINE L1 -1899 5909 5729 362 379 124 6 chr12 123691790 123691951 -20094504 + L2 LINE L2 3091 3270 -2 861 122 74 47 chr12 123691973 123692121 -20094334 + L1PB4 LINE L1 5641 5792 -364 291 207 41 16 chr12 123692121 123692271 -20094184 + (TATAA)n Simple_repeat Simple_repeat 1 153 0 2233 156 11 6 chr12 123692280 123692646 -20093809 + L1PB4 LINE L1 5789 6156 0 181 266 0 32 chr12 123692704 123692796 -20093659 + (TAGA)n Simple_repeat Simple_repeat 3 92 -30 1815 146 3 45 chr12 123692796 123693104 -20093351 + AluSx SINE Alu 1 295 -17 181 266 0 32 chr12 123693104 123693135 -20093320 + (TAGA)n Simple_repeat Simple_repeat 92 122 0 303 28 0 0 chr12 123693181 123693217 -20093238 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 502 254 195 5 chr12 123694127 123694312 -20092143 - MIR SINE MIR -6 256 37 562 316 74 69 chr12 123694538 123694947 -20091508 - L2 LINE L2 -88 3184 2788 1387 288 51 0 chr12 123694951 123695364 -20091091 + LTR16A LTR ERVL 7 440 -10 223 196 0 39 chr12 123695910 123695961 -20090494 - MIR SINE MIR -20 242 194 578 266 39 53 chr12 123695999 123696206 -20090249 - MIR SINE MIR -51 211 8 777 247 38 12 chr12 123697473 123697867 -20088588 + MLT1J2 LTR MaLR 4 446 -4 1125 249 64 36 chr12 123698014 123698224 -20088231 + MER113 DNA MER1_type? 9 212 -309 1579 178 0 58 chr12 123698224 123698550 -20087905 + AluJb SINE Alu 1 307 -5 1125 249 64 36 chr12 123698550 123698760 -20087695 + MER113 DNA MER1_type? 212 441 -80 288 165 31 62 chr12 123699251 123699348 -20087107 + (TTGTG)n Simple_repeat Simple_repeat 1 94 0 26 74 0 0 chr12 123699469 123699523 -20086932 + AT_rich Low_complexity Low_complexity 1 54 0 241 353 73 7 chr12 123699551 123699687 -20086768 + MIR3 SINE MIR 64 208 0 736 232 6 12 chr12 123699733 123699901 -20086554 + MIR SINE MIR 64 230 -32 276 275 192 0 chr12 123699931 123700051 -20086404 + MIR SINE MIR 96 238 -24 1595 115 51 0 chr12 123700777 123700994 -20085461 + MER30 DNA MER1_type 3 230 0 508 250 79 30 chr12 123701058 123701222 -20085233 + MIR3 SINE MIR 7 178 -30 3096 181 33 8 chr12 123701268 123701781 -20084674 - L1MB7 LINE L1 -297 5887 5352 2271 104 10 3 chr12 123701781 123702088 -20084367 - AluSx SINE Alu -3 309 1 3096 181 33 8 chr12 123702088 123702350 -20084105 - L1MB7 LINE L1 -832 5352 5098 580 143 0 0 chr12 123702445 123702529 -20083926 - AluJb SINE Alu -23 289 206 383 287 47 0 chr12 123703342 123703471 -20082984 - MIR SINE MIR -62 200 66 225 339 82 41 chr12 123703590 123703761 -20082694 + MIR SINE MIR 8 185 -77 355 232 58 45 chr12 123703961 123704116 -20082339 + MIR SINE MIR 69 225 -37 213 94 0 0 chr12 123704438 123704470 -20081985 + (CA)n Simple_repeat Simple_repeat 2 33 0 991 236 103 72 chr12 123705135 123705366 -20081089 - L2 LINE L2 0 3313 3091 450 53 0 0 chr12 123705366 123705423 -20081032 + (TG)n Simple_repeat Simple_repeat 2 58 0 991 236 103 72 chr12 123705423 123705666 -20080789 - L2 LINE L2 -222 3091 2824 259 344 21 0 chr12 123705785 123705881 -20080574 - MIR SINE MIR -63 145 48 628 153 10 0 chr12 123706007 123706105 -20080350 + MER20 DNA MER1_type 121 219 0 207 100 0 0 chr12 123706741 123706771 -20079684 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 209 336 34 84 chr12 123706776 123706895 -20079560 - L2 LINE L2 -24 3248 3136 209 250 18 18 chr12 123706994 123707050 -20079405 - L2 LINE L2 -190 3082 3027 991 174 68 29 chr12 123707061 123707268 -20079187 - MER20 DNA MER1_type -4 215 1 214 281 140 45 chr12 123707312 123707490 -20078965 - L2 LINE L2 -496 2818 2624 260 276 37 12 chr12 123708070 123708184 -20078271 - MIR SINE MIR -67 141 31 3170 70 0 41 chr12 123708285 123708728 -20077727 + MLT2A1 LTR ERVL 1 425 -19 270 48 143 0 chr12 123708733 123708775 -20077680 + MLT2A1 LTR ERVL 394 441 -3 489 17 0 0 chr12 123708785 123708843 -20077612 + (TC)n Simple_repeat Simple_repeat 2 59 0 255 61 0 0 chr12 123708843 123708876 -20077579 + (TA)n Simple_repeat Simple_repeat 2 34 0 302 98 59 0 chr12 123708883 123708934 -20077521 + MLT2A2 LTR ERVL 400 453 0 279 350 127 6 chr12 123709055 123709212 -20077243 - MIR SINE MIR -59 203 28 214 306 82 0 chr12 123709677 123709811 -20076644 + L2 LINE L2 2856 3000 -313 267 322 22 0 chr12 123709962 123710052 -20076403 - MIR SINE MIR -120 142 51 797 273 73 19 chr12 123710882 123711087 -20075368 - MER58A DNA MER1_type -6 218 3 278 289 24 12 chr12 123711311 123711394 -20075061 + L2 LINE L2 3230 3313 0 234 204 0 0 chr12 123711717 123711771 -20074684 + L1ME4a LINE L1 6068 6121 0 299 254 53 85 chr12 123711845 123711897 -20074558 - MER5A DNA MER1_type -6 183 131 1753 163 20 14 chr12 123711897 123712192 -20074263 + AluJo SINE Alu 1 297 -15 299 254 53 85 chr12 123712192 123712328 -20074127 - MER5A DNA MER1_type -58 131 1 880 243 171 58 chr12 123713240 123713709 -20072746 - MLT1G1 LTR MaLR 0 595 74 452 325 24 19 chr12 123714168 123714380 -20072075 - MIR SINE MIR -1 261 49 1407 200 144 19 chr12 123714886 123715296 -20071159 + MLT1C LTR MaLR 7 467 0 699 241 87 104 chr12 123716621 123716966 -20069489 + MER102b DNA MER1_type 1 339 -2 205 274 151 50 chr12 123717157 123717336 -20069119 + L2 LINE L2 2992 3188 -84 195 42 0 0 chr12 123717483 123717507 -20068948 + (TAA)n Simple_repeat Simple_repeat 3 26 0 890 251 73 32 chr12 123717561 123717932 -20068523 - LTR16B LTR ERVL 0 464 79 450 298 43 5 chr12 123718453 123718641 -20067814 - MIR SINE MIR -24 238 44 24 53 0 0 chr12 123718914 123718952 -20067503 + GC_rich Low_complexity Low_complexity 1 38 0 34 72 0 0 chr12 123718987 123719056 -20067399 + GC_rich Low_complexity Low_complexity 1 69 0 332 93 0 19 chr12 123719238 123719292 -20067163 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 237 180 0 0 chr12 123719389 123719439 -20067016 + (TG)n Simple_repeat Simple_repeat 2 51 0 372 254 20 43 chr12 123719538 123719791 -20066664 + CT-rich Low_complexity Low_complexity 1 247 0 2271 109 7 0 chr12 123720744 123721046 -20065409 - AluSq SINE Alu -9 304 1 922 196 13 0 chr12 123721256 123721414 -20065041 + FAM SINE Alu 4 163 -12 21 0 0 0 chr12 123721925 123721946 -20064509 + AT_rich Low_complexity Low_complexity 1 21 0 279 282 12 0 chr12 123722372 123722457 -20063998 + MIR SINE MIR 69 154 -108 283 260 0 57 chr12 123722839 123722962 -20063493 - MIR SINE MIR -27 235 120 1063 229 120 30 chr12 123723218 123723613 -20062842 - MLT1J1 LTR MaLR -9 441 1 1878 154 0 40 chr12 123723777 123724101 -20062354 + AluSx SINE Alu 1 311 -1 208 154 0 26 chr12 123724101 123724140 -20062315 + GA-rich Low_complexity Low_complexity 1 38 0 791 158 7 0 chr12 123724141 123724287 -20062168 + A-rich Low_complexity Low_complexity 3 149 0 233 317 85 40 chr12 123724436 123724660 -20061795 + L2 LINE L2 2830 3063 -209 425 274 102 32 chr12 123724953 123725309 -20061146 + MLT1L LTR MaLR 137 542 -73 1652 126 56 0 chr12 123725395 123725665 -20060790 - L1PB4 LINE L1 -116 6040 5756 231 321 0 25 chr12 123725667 123725748 -20060707 + MER94 DNA DNA 56 134 0 215 259 22 126 chr12 123725794 123725870 -20060585 + MIR SINE MIR 118 176 -86 2308 109 0 0 chr12 123725870 123726172 -20060283 + AluSx SINE Alu 1 302 -10 215 259 22 126 chr12 123726172 123726230 -20060225 + MIR SINE MIR 176 238 -24 222 118 0 0 chr12 123726536 123726570 -20059885 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2295 109 0 3 chr12 123727473 123727785 -20058670 - AluY SINE Alu 0 311 1 324 335 55 40 chr12 123728223 123728495 -20057960 - L1M4 LINE L1 -1011 5135 4860 302 174 116 80 chr12 123728598 123728736 -20057719 - L1M4 LINE L1 -1332 4814 4672 280 313 95 25 chr12 123728861 123729145 -20057310 - L1M4 LINE L1 -1897 4249 3946 270 231 31 0 chr12 123729213 123729278 -20057177 - L1M4 LINE L1 -2311 3835 3769 428 222 67 0 chr12 123729654 123729744 -20056711 - MER81 DNA DNA -15 99 4 23 33 0 0 chr12 123729926 123729956 -20056499 + AT_rich Low_complexity Low_complexity 1 30 0 1414 137 5 9 chr12 123730010 123730229 -20056226 + MER20 DNA MER1_type 2 219 0 316 263 0 35 chr12 123731857 123731971 -20054484 + MER103 DNA DNA 55 164 -2 319 266 49 35 chr12 123732489 123732632 -20053823 + MIR SINE MIR 24 168 -94 531 244 80 11 chr12 123732858 123733054 -20053401 + MIR SINE MIR 36 241 -21 341 241 11 0 chr12 123733401 123733488 -20052967 - L2 LINE L2 0 3272 3185 217 200 19 29 chr12 123733515 123733620 -20052835 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 2002 145 0 3 chr12 123733670 123733966 -20052489 - AluSx SINE Alu -17 295 1 330 278 93 19 chr12 123734076 123734184 -20052271 - L2 LINE L2 -8 3264 3149 423 270 26 120 chr12 123734244 123734405 -20052050 + MIR SINE MIR 2 130 -132 1963 98 0 0 chr12 123734405 123734650 -20051805 + AluSg SINE Alu 54 298 -12 423 270 26 120 chr12 123734650 123734755 -20051700 + MIR SINE MIR 130 243 -19 22 35 0 0 chr12 123734852 123734881 -20051574 + AT_rich Low_complexity Low_complexity 1 29 0 186 71 0 0 chr12 123734899 123734927 -20051528 + (T)n Simple_repeat Simple_repeat 1 28 0 594 177 0 0 chr12 123735068 123735164 -20051291 + MER81 DNA DNA 1 96 -18 342 290 24 24 chr12 123735613 123735737 -20050718 + MIR SINE MIR 48 171 -91 189 0 0 0 chr12 123736205 123736226 -20050229 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 444 315 0 0 chr12 123736242 123736369 -20050086 + MER103 DNA DNA 11 137 -29 315 235 153 10 chr12 123736875 123736973 -20049482 - MIR SINE MIR -88 174 63 332 268 0 0 chr12 123737127 123737198 -20049257 + MER103 DNA DNA 11 81 -85 2121 191 52 54 chr12 123738896 123739398 -20047057 + MLT1D LTR MaLR 5 505 0 1905 171 0 3 chr12 123739540 123739845 -20046610 + AluJb SINE Alu 1 304 -8 475 291 15 31 chr12 123739869 123740065 -20046390 - L2 LINE L2 0 3313 3121 376 244 0 0 chr12 123740471 123740561 -20045894 - MER5A DNA MER1_type -85 104 15 689 219 7 0 chr12 123740712 123740858 -20045597 + MIR SINE MIR 65 211 -51 2140 121 0 0 chr12 123741073 123741378 -20045077 - AluSx SINE Alu 0 305 1 224 351 29 0 chr12 123741561 123741669 -20044786 - MIR SINE MIR -85 123 5 262 295 12 3 chr12 123743381 123743481 -20042974 + L1ME4a LINE L1 5671 5769 -393 22 35 0 0 chr12 123743573 123743602 -20042853 + AT_rich Low_complexity Low_complexity 1 29 0 236 229 0 0 chr12 123743620 123743668 -20042787 + L1ME4a LINE L1 5978 6025 -96 2618 103 0 3 chr12 123743790 123744160 -20042295 - L1PB1 LINE L1 0 6151 5783 198 167 0 0 chr12 123744164 123744200 -20042255 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 227 239 34 11 chr12 123744200 123744288 -20042167 - L1MC4 LINE L1 -1339 6703 6614 226 175 0 126 chr12 123744212 123744315 -20042140 + L1MC4 LINE L1 6614 6703 -1339 * 709 162 0 12 chr12 123744343 123744487 -20041968 - L1P5 LINE L1 -361 5790 5655 275 240 13 0 chr12 123744488 123744563 -20041892 + MIR SINE MIR 129 204 -58 4308 112 5 3 chr12 123744563 123744969 -20041486 + L1PA15 LINE L1 5542 5951 -214 2166 80 4 4 chr12 123744969 123745245 -20041210 + AluY SINE Alu 19 294 -17 4308 112 5 3 chr12 123745245 123745455 -20041000 + L1PA15 LINE L1 5951 6159 -6 749 193 0 22 chr12 123745894 123746029 -20040426 + FLAM_A SINE Alu 1 132 -1 211 95 167 0 chr12 123746532 123746574 -20039881 + L2 LINE L2 3264 3312 -1 2456 54 6 38 chr12 123747225 123747540 -20038915 + AluY SINE Alu 4 308 -3 4349 105 3 2 chr12 123747541 123748148 -20038307 - L1PA13 LINE L1 -19 6144 5537 413 297 190 5 chr12 123748311 123748614 -20037841 + LTR16C LTR ERVL 51 460 -31 406 309 36 0 chr12 123748652 123748791 -20037664 + MIR SINE MIR 115 258 -4 2362 67 0 63 chr12 123748914 123749245 -20037210 + AluY SINE Alu 1 310 -1 446 210 89 15 chr12 123749340 123749488 -20036967 + MIR SINE MIR 100 261 -1 1844 166 0 30 chr12 123749534 123749829 -20036626 + AluJo SINE Alu 1 287 -20 261 57 0 0 chr12 123749829 123749864 -20036591 + (CATA)n Simple_repeat Simple_repeat 2 36 0 185 94 31 0 chr12 123749877 123749909 -20036546 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 859 232 23 18 chr12 123750527 123750747 -20035708 - MIR SINE MIR -10 252 32 394 295 33 0 chr12 123750878 123751000 -20035455 - MER117 DNA MER1_type -65 132 7 232 280 13 13 chr12 123751020 123751095 -20035360 - LTR67 LTR ERVL -17 540 466 294 181 165 45 chr12 123752416 123752549 -20033906 - MIR SINE MIR -47 215 67 207 100 0 0 chr12 123752678 123752708 -20033747 + (TG)n Simple_repeat Simple_repeat 2 31 0 1818 190 161 21 chr12 123753800 123754222 -20032233 + MLT1D LTR MaLR 23 503 -2 239 252 29 29 chr12 123754885 123754988 -20031467 - L2 LINE L2 -496 2818 2716 234 105 0 0 chr12 123755360 123755398 -20031057 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 422 276 115 13 chr12 123755400 123755556 -20030899 - L2 LINE L2 -15 3298 3127 357 266 108 19 chr12 123755843 123756001 -20030454 - L2 LINE L2 -254 3059 2888 194 289 175 35 chr12 123756124 123756238 -20030217 - L2 LINE L2 0 3313 3184 3067 182 22 5 chr12 123756959 123757551 -20028904 + L1MB5 LINE L1 5567 6168 -6 552 270 0 0 chr12 123758438 123758606 -20027849 - MIR SINE MIR -65 143 26 349 283 106 17 chr12 123759026 123759206 -20027249 - L2 LINE L2 0 3313 3118 1014 240 21 114 chr12 123759269 123759323 -20027132 - MLT1J LTR MaLR -22 489 432 2208 114 30 0 chr12 123759323 123759622 -20026833 + AluSq SINE Alu 1 308 -5 1014 240 21 114 chr12 123759622 123759894 -20026561 - MLT1J LTR MaLR -79 432 217 2146 125 0 0 chr12 123759894 123760207 -20026248 + AluSx SINE Alu 1 313 0 1014 240 21 114 chr12 123760207 123760353 -20026102 - MLT1J LTR MaLR -294 217 59 419 313 34 11 chr12 123760366 123760545 -20025910 + MIR SINE MIR 10 192 -70 382 296 40 17 chr12 123761107 123761283 -20025172 - MIR SINE MIR -24 238 59 207 387 0 7 chr12 123761417 123761554 -20024901 - L2 LINE L2 -463 2851 2716 372 198 38 19 chr12 123761612 123761718 -20024737 - MIR SINE MIR -108 154 47 484 315 52 13 chr12 123762374 123762606 -20023849 - MIR SINE MIR -5 257 17 253 306 30 22 chr12 123763054 123763188 -20023267 - MIR3 SINE MIR -63 145 11 1504 217 6 40 chr12 123763280 123763404 -20023051 + MER58B DNA MER1_type 4 131 -2289 2240 113 3 0 chr12 123763404 123763696 -20022759 + AluSx SINE Alu 1 293 -19 1504 217 6 40 chr12 123763696 123763917 -20022538 + MER58B DNA MER1_type 131 337 -4 239 198 22 22 chr12 123764488 123764579 -20021876 + GA-rich Low_complexity Low_complexity 2 92 0 363 222 0 0 chr12 123764583 123764655 -20021800 - Charlie4 DNA MER1_type -24 1937 1866 2808 148 36 22 chr12 123764775 123765125 -20021330 - L1MB3 LINE L1 -90 6093 5732 1874 85 37 54 chr12 123765125 123765420 -20021035 - AluSc SINE Alu -19 290 1 2808 148 36 22 chr12 123765420 123765574 -20020881 - L1MB3 LINE L1 -451 5732 5582 225 336 71 29 chr12 123765591 123765731 -20020724 - L2 LINE L2 -615 2699 2554 469 218 272 0 chr12 123765885 123766032 -20020423 + MIR SINE MIR 11 197 -65 243 258 67 34 chr12 123766834 123766923 -20019532 + MIR SINE MIR 38 129 -133 1832 205 119 7 chr12 123766926 123767346 -20019109 + MLT1C LTR MaLR 1 467 0 1112 106 0 29 chr12 123767551 123767721 -20018734 - L1PA8 LINE L1 0 6172 6008 715 270 65 48 chr12 123767784 123768140 -20018315 - L2 LINE L2 -59 3254 2893 573 219 146 18 chr12 123768260 123768424 -20018031 - MIR SINE MIR -18 244 60 367 300 18 9 chr12 123768651 123768761 -20017694 - L2 LINE L2 -6 3266 3156 197 246 16 0 chr12 123768766 123768827 -20017628 - MIR SINE MIR -115 147 86 228 178 0 0 chr12 123769222 123769267 -20017188 - MIR SINE MIR -87 175 131 194 330 11 0 chr12 123769574 123769665 -20016790 + L2 LINE L2 2920 3011 -261 1387 226 14 7 chr12 123769886 123770173 -20016282 + MLT1F LTR MaLR 4 292 -250 334 241 60 0 chr12 123770322 123770438 -20016017 - MIR SINE MIR -56 206 84 745 214 32 0 chr12 123770438 123770592 -20015863 - MLT1K LTR MaLR -5 562 404 460 222 0 0 chr12 123770627 123770717 -20015738 + AluJ/FRAM SINE Alu 217 306 -6 444 171 95 9 chr12 123770719 123770824 -20015631 - MIR SINE MIR -141 121 8 359 241 74 0 chr12 123771087 123771195 -20015260 - MIR SINE MIR -31 231 116 876 292 69 20 chr12 123772024 123772428 -20014027 + LTR16B LTR ERVL 41 464 0 551 255 173 7 chr12 123772436 123772729 -20013726 + L2 LINE L2 2720 3056 -257 647 250 62 13 chr12 123772851 123773075 -20013380 - MIR SINE MIR -1 261 27 4163 93 2 9 chr12 123773195 123773753 -20012702 + MER41A LTR ERV1 1 554 0 889 304 82 15 chr12 123773872 123774276 -20012179 + LTR33 LTR ERVL 34 464 -57 227 236 78 20 chr12 123774352 123774471 -20011984 - MIR SINE MIR -63 145 14 348 252 122 23 chr12 123774512 123774643 -20011812 + MIR SINE MIR 13 156 -106 221 155 52 0 chr12 123774699 123774757 -20011698 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 213 39 0 0 chr12 123774810 123774836 -20011619 + (CAT)n Simple_repeat Simple_repeat 1 26 0 408 340 13 0 chr12 123775457 123775607 -20010848 + MIR SINE MIR 14 165 -97 196 329 0 14 chr12 123775693 123775766 -20010689 + MIR SINE MIR 81 152 -110 215 331 22 43 chr12 123775934 123776073 -20010382 + MIR SINE MIR 127 262 0 818 303 99 41 chr12 123776468 123776831 -20009624 - MLT1K LTR MaLR -169 419 36 684 279 94 7 chr12 123776831 123777128 -20009327 - L1ME3A LINE L1 -196 5974 5652 614 232 35 7 chr12 123777202 123777319 -20009136 + MLT2C1 LTR ERVL 238 361 -36 252 0 0 0 chr12 123777319 123777347 -20009108 + (CA)n Simple_repeat Simple_repeat 2 29 0 614 232 35 7 chr12 123777347 123777371 -20009084 + MLT2C1 LTR ERVL 361 383 -14 207 274 77 23 chr12 123777600 123777735 -20008720 - MIR SINE MIR -63 145 3 569 283 35 115 chr12 123778184 123778833 -20007622 + L2 LINE L2 2658 3255 -17 203 214 24 0 chr12 123778841 123778883 -20007572 + GA-rich Low_complexity Low_complexity 2 44 0 216 306 192 0 chr12 123779860 123780089 -20006366 + L2 LINE L2 2005 2277 -1037 730 272 44 0 chr12 123780101 123780281 -20006174 - MLT1J2 LTR MaLR -7 443 256 735 242 46 0 chr12 123780296 123780449 -20006006 + MER20 DNA MER1_type 37 196 -23 1112 268 19 8 chr12 123780456 123780721 -20005734 - MLT1J2 LTR MaLR -182 268 1 186 255 0 0 chr12 123781016 123781067 -20005388 + (TG)n Simple_repeat Simple_repeat 2 52 0 596 273 13 0 chr12 123781067 123781221 -20005234 + L2 LINE L2 3158 3313 0 1225 98 0 0 chr12 123781467 123781630 -20004825 - AluSp SINE Alu -6 307 145 186 320 131 36 chr12 123781653 123781959 -20004496 + L2 LINE L2 2924 3258 -14 404 362 51 28 chr12 123782334 123782588 -20003867 + L2 LINE L2 2987 3246 -26 976 247 126 38 chr12 123782590 123782892 -20003563 - LTR33A LTR ERVL -2 521 160 2836 80 3 3 chr12 123782892 123783256 -20003199 - THE1B LTR MaLR 0 364 1 976 247 126 38 chr12 123783256 123783430 -20003025 - LTR33A LTR ERVL -363 160 3 705 297 62 50 chr12 123783489 123783890 -20002565 - MLT1I LTR MaLR -3 406 1 999 211 29 10 chr12 123784085 123784289 -20002166 - MLT1F LTR MaLR -38 504 297 2078 222 33 33 chr12 123784350 123784863 -20001592 + MLT1F LTR MaLR 3 515 -27 1023 238 116 30 chr12 123784894 123785256 -20001199 + MSTD LTR MaLR 1 393 -3 202 231 19 0 chr12 123785404 123785456 -20000999 + GA-rich Low_complexity Low_complexity 3 55 0 463 167 11 0 chr12 123787105 123787195 -19999260 + MIR SINE MIR 39 129 -133 1808 98 15 0 chr12 123787386 123787650 -19998805 - L1MA2 LINE L1 0 6304 6037 22 0 0 0 chr12 123787656 123787678 -19998777 + AT_rich Low_complexity Low_complexity 1 22 0 544 311 149 39 chr12 123788258 123788310 -19998145 + MLT1K LTR MaLR 1 46 -542 1906 128 0 104 chr12 123788310 123788655 -19997800 + AluJb SINE Alu 1 309 -3 544 311 149 39 chr12 123788655 123789065 -19997390 + MLT1K LTR MaLR 46 514 -74 1669 180 0 3 chr12 123789992 123790275 -19996180 + AluJo SINE Alu 1 282 -30 649 254 46 15 chr12 123790346 123790543 -19995912 - MIR SINE MIR -58 204 2 312 273 191 5 chr12 123790572 123790781 -19995674 - L1ME4a LINE L1 -4 6117 5870 24 32 0 0 chr12 123790889 123790920 -19995535 + AT_rich Low_complexity Low_complexity 1 31 0 2356 107 0 19 chr12 123791056 123791374 -19995081 + AluSx SINE Alu 1 312 0 342 235 12 0 chr12 123791374 123791459 -19994996 - L1ME4a LINE L1 -1999 5809 5724 235 304 18 36 chr12 123791462 123791574 -19994881 - L2 LINE L2 -279 3034 2925 701 243 72 0 chr12 123792709 123792890 -19993565 - MIR SINE MIR -44 218 25 661 192 69 138 chr12 123792890 123793166 -19993289 + MER33 DNA MER1_type 1 257 -67 238 250 0 0 chr12 123793154 123793210 -19993245 - AluJ/monomer SINE Alu -4 297 242 * 963 227 147 32 chr12 123793227 123793762 -19992693 - LTR50 LTR ERVL -149 646 2 508 29 130 0 chr12 123794062 123794131 -19992324 - MADE1 DNA Mariner -2 78 1 180 211 19 39 chr12 123794262 123794314 -19992141 + L2 LINE L2 3262 3312 -1 2201 126 3 0 chr12 123794709 123795011 -19991444 - AluSx SINE Alu -9 303 1 2550 101 17 3 chr12 123795095 123795453 -19991002 - THE1B LTR MaLR 0 364 2 225 154 0 0 chr12 123795461 123795500 -19990955 + (TA)n Simple_repeat Simple_repeat 1 39 0 232 170 0 0 chr12 123795505 123795552 -19990903 + LTR66 LTR ERVL 394 440 -170 311 242 0 21 chr12 123795700 123795813 -19990642 + MIR SINE MIR 33 139 -69 250 304 25 13 chr12 123796496 123796575 -19989880 + MIR SINE MIR 50 129 -79 482 256 59 30 chr12 123796871 123797074 -19989381 + L1ME4a LINE L1 5698 5906 -215 683 217 16 10 chr12 123797171 123797420 -19989035 + MER58 DNA MER1_type 51 2415 -5 230 319 53 53 chr12 123797709 123797878 -19988577 - MIR SINE MIR -12 250 82 607 263 43 47 chr12 123798751 123798983 -19987472 + MIR SINE MIR 32 262 0 323 212 71 0 chr12 123799191 123799276 -19987179 + MIR SINE MIR 95 185 -77 2361 89 3 25 chr12 123799681 123799997 -19986458 - AluSp SINE Alu 0 313 5 2314 113 0 3 chr12 123800210 123800520 -19985935 + AluSx SINE Alu 1 309 -3 457 324 32 54 chr12 123800712 123800990 -19985465 - MLT1L LTR MaLR -221 394 123 219 306 0 42 chr12 123801185 123801257 -19985198 + L2 LINE L2 3202 3270 -2 968 261 0 26 chr12 123801442 123801672 -19984783 - MER58A DNA MER1_type 0 224 1 1417 293 34 14 chr12 123801757 123802198 -19984257 - LTR16B LTR ERVL 0 464 15 183 42 0 0 chr12 123802725 123802749 -19983706 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1933 151 6 16 chr12 123802897 123803209 -19983246 + AluJo SINE Alu 1 309 -3 418 294 0 16 chr12 123803290 123803416 -19983039 + MIR SINE MIR 116 239 -23 1682 273 90 24 chr12 123804612 123805154 -19981301 + MLT1E LTR MaLR 8 585 -8 1650 222 34 37 chr12 123805547 123805984 -19980471 - MER63B DNA MER1_type 0 436 1 766 172 0 8 chr12 123806210 123806344 -19980111 + FLAM_A SINE Alu 1 133 0 1819 142 0 74 chr12 123806370 123806695 -19979760 + AluJb SINE Alu 12 312 0 416 242 5 124 chr12 123807616 123807810 -19978645 - MLT1L LTR MaLR -430 185 15 517 267 17 50 chr12 123807881 123808061 -19978394 - MIR SINE MIR -33 229 56 827 222 16 16 chr12 123808084 123808144 -19978311 - MER3 DNA MER1_type -1 208 149 1943 178 34 6 chr12 123808144 123808499 -19977956 + MER47A DNA MER2_type 1 365 -1 827 222 16 16 chr12 123808499 123808632 -19977823 - MER3 DNA MER1_type -59 150 15 292 314 148 19 chr12 123809397 123809607 -19976848 + MIR SINE MIR 20 256 -6 276 231 51 0 chr12 123810337 123810415 -19976040 - MER5A DNA MER1_type -55 134 53 480 243 36 14 chr12 123811857 123811997 -19974458 + MER103 DNA DNA 22 164 -2 181 297 29 94 chr12 123812060 123812198 -19974257 - MIR3 SINE MIR -48 160 32 325 365 15 0 chr12 123812259 123812396 -19974059 - L2 LINE L2 0 3313 3175 4394 212 73 5 chr12 123812452 123813451 -19973004 + Tigger6a DNA MER2_type 17 1083 0 372 262 56 65 chr12 123813496 123813710 -19972745 - LTR33 LTR ERVL -3 518 307 435 223 127 71 chr12 123813771 123813848 -19972607 - LTR33 LTR ERVL -306 215 144 2269 135 30 28 chr12 123813848 123814210 -19972245 - THE1B LTR MaLR -1 363 1 435 223 127 71 chr12 123814210 123814329 -19972126 - LTR33 LTR ERVL -377 144 8 874 249 84 0 chr12 123814899 123815112 -19971343 - MIR SINE MIR -31 231 1 684 334 63 60 chr12 123815598 123816314 -19970141 + L2 LINE L2 2174 2891 -423 304 214 12 24 chr12 123816334 123816442 -19970013 + MLT1F1 LTR MaLR 3 109 -458 1402 138 35 0 chr12 123816472 123816703 -19969752 - L1PA16 LINE L1 -9 6157 5919 561 236 84 69 chr12 123816703 123816906 -19969549 + MLT1F1 LTR MaLR 96 301 -266 235 242 40 40 chr12 123816930 123817029 -19969426 + MLT1F1 LTR MaLR 442 540 -2 382 286 50 49 chr12 123817042 123817314 -19969141 + L2 LINE L2 2918 3271 -1 1404 129 0 10 chr12 123818010 123818212 -19968243 - AluSg/x SINE Alu -16 296 97 2634 53 0 0 chr12 123818336 123818636 -19967819 - AluY SINE Alu -11 300 1 2027 142 13 0 chr12 123818977 123819280 -19967175 - AluSx SINE Alu -5 307 1 2228 116 3 0 chr12 123819655 123819949 -19966506 + AluSq SINE Alu 1 295 -18 456 250 53 0 chr12 123821009 123821141 -19965314 + MIR SINE MIR 54 192 -70 254 208 56 21 chr12 123821289 123821403 -19965052 + MIR SINE MIR 59 180 -82 1417 248 90 27 chr12 123822317 123822760 -19963695 - MLT1J LTR MaLR -8 503 33 225 313 24 12 chr12 123822926 123823009 -19963446 - L2 LINE L2 -1 3271 3188 25 0 0 0 chr12 123823256 123823281 -19963174 + AT_rich Low_complexity Low_complexity 1 25 0 2084 124 0 10 chr12 123824844 123825135 -19961320 + AluSx SINE Alu 1 288 -24 303 264 44 11 chr12 123825150 123825241 -19961214 + L1MC4 LINE L1 6607 6700 -1342 2048 247 49 19 chr12 123825242 123825812 -19960643 + L1ME2 LINE L1 5569 6155 -9 209 116 47 23 chr12 123825818 123825861 -19960594 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 384 268 0 47 chr12 123825870 123825997 -19960458 + L2 LINE L2 2930 3050 -263 260 297 20 54 chr12 123826196 123826344 -19960111 + LTR33 LTR ERVL 48 190 -331 3724 131 15 5 chr12 123826354 123826973 -19959482 - L1MC1 LINE L1 -471 5862 5237 3021 245 72 19 chr12 123827078 123827998 -19958457 + MER69B DNA AcHobo 257 1225 -1 404 215 0 0 chr12 123828428 123828507 -19957948 - MIR3 SINE MIR -49 159 81 204 40 0 0 chr12 123828876 123828901 -19957554 + (A)n Simple_repeat Simple_repeat 1 25 0 3745 67 1 4 chr12 123830066 123830525 -19955930 + MLT2A2 LTR ERVL 1 397 0 734 277 24 66 chr12 123830536 123830825 -19955630 - Charlie8 DNA MER1_type -2137 280 4 616 272 123 0 chr12 123831283 123831478 -19954977 + MIR SINE MIR 29 247 -15 305 264 36 43 chr12 123832001 123832141 -19954314 + MIR SINE MIR 49 187 -75 451 176 0 28 chr12 123832432 123832540 -19953915 + C-rich Low_complexity Low_complexity 3 107 0 247 221 8 47 chr12 123832512 123832639 -19953816 + CT-rich Low_complexity Low_complexity 1 122 0 * 347 266 106 15 chr12 123832904 123833103 -19953352 - L1ME4a LINE L1 -23 6098 5882 1163 255 80 34 chr12 123833164 123833387 -19953068 - L2 LINE L2 0 3313 3102 420 20 0 0 chr12 123833387 123833436 -19953019 + (TG)n Simple_repeat Simple_repeat 2 50 0 1163 255 80 34 chr12 123833436 123833841 -19952614 - L2 LINE L2 -211 3102 2664 1419 124 0 10 chr12 123834674 123834876 -19951579 - AluSg/x SINE Alu -16 296 97 2576 47 3 0 chr12 123834996 123835292 -19951163 - AluY SINE Alu -10 301 5 1992 141 13 3 chr12 123835637 123835941 -19950514 - AluSx SINE Alu -5 307 1 339 239 82 15 chr12 123837256 123837390 -19949065 + L1MC/D LINE L1 5610 5752 -2056 206 271 0 0 chr12 123837463 123837511 -19948944 + MIR SINE MIR 46 93 -169 1810 192 48 83 chr12 123837661 123837868 -19948587 + MLT1C LTR MaLR 6 219 -248 2351 114 0 0 chr12 123837868 123838174 -19948281 + AluSx SINE Alu 4 309 -3 1810 192 48 83 chr12 123838174 123838445 -19948010 + MLT1C LTR MaLR 219 467 0 378 306 153 22 chr12 123839551 123839773 -19946682 - MIR SINE MIR -1 261 11 470 278 85 67 chr12 123839993 123840558 -19945897 + L1ME4a LINE L1 5523 6097 -24 699 249 21 7 chr12 123840559 123840742 -19945713 + MLT1I LTR MaLR 2 191 -238 269 165 0 157 chr12 123840770 123840885 -19945570 + MLT1I LTR MaLR 298 394 -15 21 0 0 0 chr12 123841345 123841366 -19945089 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 123842216 123842239 -19944216 + AT_rich Low_complexity Low_complexity 1 23 0 267 114 0 0 chr12 123842438 123842482 -19943973 + (TC)n Simple_repeat Simple_repeat 1 44 0 1857 188 48 83 chr12 123842661 123842932 -19943523 - MLT1C LTR MaLR 0 467 219 2351 114 0 0 chr12 123842932 123843238 -19943217 - AluSx SINE Alu -3 309 4 1857 188 48 83 chr12 123843238 123843445 -19943010 - MLT1C LTR MaLR -248 219 6 206 271 0 0 chr12 123843594 123843642 -19942813 - MIR SINE MIR -169 93 46 351 237 74 15 chr12 123843715 123843850 -19942605 - L1MC/D LINE L1 -2056 5752 5610 363 320 0 0 chr12 123844061 123844161 -19942294 + MIR SINE MIR 21 120 -142 1842 153 22 26 chr12 123844177 123844490 -19941965 + AluSx SINE Alu 1 312 0 338 325 26 8 chr12 123845129 123845246 -19941209 - L2 LINE L2 -21 3251 3133 1139 188 34 103 chr12 123845525 123845845 -19940610 - AluJo SINE Alu -3 299 2 2169 134 0 6 chr12 123846989 123847303 -19939152 - AluSx SINE Alu 0 312 1 348 24 0 0 chr12 123847522 123847563 -19938892 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 372 191 305 9 chr12 123848302 123848407 -19938048 - MIR SINE MIR -25 237 102 236 272 10 78 chr12 123848409 123848512 -19937943 + MER81 DNA DNA 17 112 -2 497 274 139 35 chr12 123849428 123849658 -19936797 + MIR SINE MIR 9 262 0 344 269 13 0 chr12 123849854 123849932 -19936523 + MER45C DNA AcHobo 1 79 -874 1057 296 78 45 chr12 123849965 123850391 -19936064 + MER45C DNA AcHobo 137 576 -377 1354 182 50 31 chr12 123850662 123850981 -19935474 + MER45B DNA AcHobo 716 1040 0 330 276 83 13 chr12 123851180 123851336 -19935119 + MIR SINE MIR 84 250 -12 318 200 0 29 chr12 123852062 123852132 -19934323 + L1ME LINE L1 5513 5580 -541 415 266 82 27 chr12 123852149 123852333 -19934122 + L1ME LINE L1 5546 5739 -382 379 253 60 20 chr12 123852367 123852654 -19933801 - MLT1G1 LTR MaLR 0 595 190 324 269 54 40 chr12 123852804 123852953 -19933502 + MER102b DNA MER1_type 190 340 -1 1132 138 14 33 chr12 123853055 123853265 -19933190 + L1PA15 LINE L1 5959 6164 -1 1455 95 46 65 chr12 123854143 123854379 -19932076 - Tigger2 DNA MER2_type 0 2718 2486 1664 180 33 13 chr12 123854379 123854679 -19931776 + AluJo SINE Alu 1 306 -6 1455 95 46 65 chr12 123854679 123854704 -19931751 - Tigger2 DNA MER2_type -232 2486 2462 4596 148 9 4 chr12 123854771 123855510 -19930945 - Tigger2 DNA MER2_type -1974 744 2 507 33 0 0 chr12 123855681 123855742 -19930713 + (CA)n Simple_repeat Simple_repeat 2 62 0 1890 225 34 0 chr12 123855743 123856157 -19930298 - MER63B DNA MER1_type -3 433 6 248 291 0 0 chr12 123856269 123856355 -19930100 + (TA)n Simple_repeat Simple_repeat 2 87 0 221 325 61 61 chr12 123856382 123856496 -19929959 - MIR3 SINE MIR -19 189 76 280 192 19 0 chr12 123857342 123857394 -19929061 - L2 LINE L2 0 3313 3261 592 230 0 109 chr12 123857403 123857577 -19928878 - MER45A DNA AcHobo 0 178 24 1379 303 49 53 chr12 123857604 123858173 -19928282 - L2 LINE L2 -57 3256 2686 1773 183 0 0 chr12 123858173 123858479 -19927976 - AluJo SINE Alu -6 306 1 1379 303 49 53 chr12 123858479 123858577 -19927878 - L2 LINE L2 -627 2686 2589 1416 259 18 3 chr12 123858577 123858913 -19927542 - MER58B DNA MER1_type 0 341 1 1379 303 49 53 chr12 123858913 123859140 -19927315 - L2 LINE L2 -724 2589 2369 456 283 25 83 chr12 123859154 123859394 -19927061 - MIR SINE MIR -1 261 36 411 143 14 0 chr12 123860455 123860525 -19925930 + MADE1 DNA Mariner 9 79 -1 252 293 73 27 chr12 123860740 123860890 -19925565 + MIR SINE MIR 85 241 -21 * 603 294 28 28 chr12 123860883 123861097 -19925358 - MIR SINE MIR -3 259 46 247 316 47 41 chr12 123861337 123861508 -19924947 - LTR16B LTR ERVL 0 464 293 335 309 137 18 chr12 123861539 123861707 -19924748 - LTR16B LTR ERVL -210 254 67 1219 107 0 11 chr12 123862262 123862440 -19924015 - AluSg/x SINE Alu -1 309 134 547 277 15 0 chr12 123862566 123862703 -19923752 + MIR SINE MIR 99 237 -25 1051 212 57 0 chr12 123863541 123863753 -19922702 - MIR SINE MIR -1 261 38 976 259 9 5 chr12 123863756 123863976 -19922479 + MER58A DNA MER1_type 4 224 0 208 244 179 26 chr12 123864090 123864168 -19922287 - MIR3 SINE MIR -41 167 78 259 267 89 0 chr12 123864675 123864776 -19921679 + MER113 DNA MER1_type? 100 209 -312 3768 170 63 38 chr12 123864786 123864934 -19921521 + L1MB7 LINE L1 5186 5329 -855 2374 65 3 7 chr12 123864934 123865243 -19921212 + AluY SINE Alu 1 308 -3 3768 170 63 38 chr12 123865243 123866041 -19920414 + L1MB7 LINE L1 5329 6173 -11 723 229 49 29 chr12 123866041 123866246 -19920209 + MER113 DNA MER1_type? 204 412 -109 427 261 89 28 chr12 123866245 123866425 -19920030 + MER113 DNA MER1_type? 331 521 0 * 1137 255 72 38 chr12 123866435 123867105 -19919350 + L2 LINE L2 2621 3313 0 1201 268 77 25 chr12 123867667 123868240 -19918215 - L2 LINE L2 0 3313 2709 389 229 0 12 chr12 123869910 123869993 -19916462 - MIR SINE MIR -147 115 34 572 275 7 7 chr12 123870356 123870494 -19915961 - L2 LINE L2 0 3313 3176 337 186 142 169 chr12 123870495 123870693 -19915762 + MLT1D LTR MaLR 2 191 -314 2031 138 0 7 chr12 123870693 123870998 -19915457 + AluJb SINE Alu 1 303 -9 337 186 142 169 chr12 123870998 123871094 -19915361 + MLT1D LTR MaLR 191 288 -217 666 228 0 0 chr12 123871138 123871265 -19915190 - MIR SINE MIR -102 160 34 972 216 5 10 chr12 123871320 123871524 -19914931 + MLT1D LTR MaLR 303 505 0 881 188 11 28 chr12 123872210 123872391 -19914064 - AluJb SINE Alu -13 299 122 1178 271 51 47 chr12 123872698 123873148 -19913307 + LTR16B LTR ERVL 1 452 -12 420 303 198 35 chr12 123873314 123873628 -19912827 - MER115 DNA AcHobo -168 525 161 3280 223 33 34 chr12 123874247 123874710 -19911745 + L1ME1 LINE L1 5345 5808 -358 2627 134 65 0 chr12 123874710 123875112 -19911343 + MSTA LTR MaLR 1 428 0 3280 223 33 34 chr12 123875112 123875466 -19910989 + L1ME1 LINE L1 5808 6161 -5 2583 143 52 2 chr12 123875485 123875891 -19910564 + MSTB LTR MaLR 1 426 0 824 286 58 0 chr12 123875908 123876132 -19910323 - MIR SINE MIR -21 241 5 557 256 56 11 chr12 123877196 123877376 -19909079 + MER117 DNA MER1_type 9 196 -1 1006 206 6 0 chr12 123877693 123877873 -19908582 + MER58A DNA MER1_type 44 224 0 351 230 171 40 chr12 123878228 123878380 -19908075 + MER117 DNA MER1_type 16 187 -10 1818 151 0 3 chr12 123878630 123878929 -19907526 + AluSx SINE Alu 1 298 -14 259 77 19 19 chr12 123879623 123879675 -19906780 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1839 144 0 0 chr12 123879678 123879956 -19906499 - AluSx SINE Alu -34 278 1 355 287 78 36 chr12 123880101 123880268 -19906187 + MIR SINE MIR 2 175 -87 996 265 0 35 chr12 123880273 123880530 -19905925 - MLT1C LTR MaLR 0 467 220 286 271 83 35 chr12 123881034 123881178 -19905277 - MLT1C LTR MaLR -274 231 81 209 125 0 25 chr12 123881188 123881228 -19905227 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 1584 110 17 0 chr12 123881248 123881484 -19904971 - L1PB1 LINE L1 -1 6150 5911 2455 119 22 0 chr12 123881495 123881864 -19904591 - L1PB1 LINE L1 -300 5851 5475 371 224 31 0 chr12 123881867 123881965 -19904490 - MLT1C LTR MaLR -366 101 1 207 298 0 0 chr12 123881967 123882024 -19904431 + MIR SINE MIR 180 236 -26 381 75 0 0 chr12 123882109 123882162 -19904293 + (TC)n Simple_repeat Simple_repeat 2 54 0 249 255 69 10 chr12 123882163 123882265 -19904190 - LTR16C LTR ERVL -3 488 381 340 256 78 78 chr12 123882272 123882347 -19904108 - LTR16C LTR ERVL -69 422 348 2149 109 7 0 chr12 123882347 123882651 -19903804 - AluSc SINE Alu -3 306 1 340 256 78 78 chr12 123882651 123882805 -19903650 - LTR16C LTR ERVL -142 349 193 1880 193 31 66 chr12 123883079 123883561 -19902894 + MLT1C LTR MaLR 1 465 -2 733 155 39 23 chr12 123884926 123885055 -19901400 + FLAM_A SINE Alu 1 131 -2 719 203 156 47 chr12 123885210 123885422 -19901033 - MLT1H LTR MaLR -7 542 308 950 186 28 0 chr12 123885751 123885928 -19900527 - MER58A DNA MER1_type -6 218 37 239 304 142 63 chr12 123885942 123886323 -19900132 - L2 LINE L2 -2 3311 2901 452 326 65 35 chr12 123886505 123886735 -19899720 + MIR SINE MIR 21 257 -5 214 191 21 0 chr12 123887209 123887256 -19899199 + (GGGTG)n Simple_repeat Simple_repeat 4 51 0 246 318 0 0 chr12 123887716 123887804 -19898651 + G-rich Low_complexity Low_complexity 1 88 0 439 264 111 7 chr12 123888594 123888738 -19897717 + MIR SINE MIR 10 168 -94 589 225 163 12 chr12 123888859 123889019 -19897436 + MER5A DNA MER1_type 4 187 -2 523 259 125 57 chr12 123889539 123889836 -19896619 + L2 LINE L2 2991 3307 -6 279 239 127 67 chr12 123889839 123889973 -19896482 + MIR SINE MIR 118 259 -3 413 275 73 51 chr12 123890250 123890428 -19896027 + MIR SINE MIR 72 253 -9 222 234 39 58 chr12 123890426 123890543 -19895912 - MIR SINE MIR -62 146 90 * 186 133 0 0 chr12 123890559 123890589 -19895866 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 2175 92 3 3 chr12 123890768 123891071 -19895384 - AluSq SINE Alu -10 303 1 627 324 13 13 chr12 123891261 123891486 -19894969 - MIR SINE MIR -4 258 34 773 264 38 5 chr12 123891798 123892010 -19894445 + MIR SINE MIR 30 248 -14 198 0 0 0 chr12 123892010 123892032 -19894423 + (A)n Simple_repeat Simple_repeat 1 22 0 550 183 8 8 chr12 123892592 123892718 -19893737 + (TGGA)n Simple_repeat Simple_repeat 1 126 0 189 74 0 0 chr12 123892779 123892806 -19893649 + (GGATG)n Simple_repeat Simple_repeat 4 30 0 404 228 18 18 chr12 123892889 123893056 -19893399 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 474 261 111 34 chr12 123893296 123893453 -19893002 - MIR SINE MIR -65 143 21 331 294 136 16 chr12 123893579 123893763 -19892692 - MIR SINE MIR -7 255 50 241 335 11 28 chr12 123893845 123894024 -19892431 + GA-rich Low_complexity Low_complexity 3 178 0 * 291 264 11 67 chr12 123893910 123894088 -19892367 + A-rich Low_complexity Low_complexity 4 171 0 220 130 0 43 chr12 123894342 123894388 -19892067 + (AGGGGG)n Simple_repeat Simple_repeat 5 48 0 505 288 150 7 chr12 123894831 123894984 -19891471 + MER5A DNA MER1_type 13 187 -2 1943 116 0 52 chr12 123895024 123895353 -19891102 + AluSx SINE Alu 1 312 0 639 264 58 6 chr12 123896554 123896728 -19889727 - MIR SINE MIR -36 226 44 2025 123 7 0 chr12 123896954 123897247 -19889208 - AluSx SINE Alu -17 295 1 334 298 93 7 chr12 123897373 123897524 -19888931 + MLT1K LTR MaLR 2 165 -423 295 321 66 20 chr12 123897671 123897867 -19888588 + MLT1K LTR MaLR 378 582 -6 207 234 21 0 chr12 123898216 123898263 -19888192 + GA-rich Low_complexity Low_complexity 4 51 0 217 322 133 0 chr12 123898340 123898430 -19888025 + L2 LINE L2 3171 3272 0 296 302 147 8 chr12 123898836 123898965 -19887490 - MIR3 SINE MIR -24 184 38 263 296 41 10 chr12 123899016 123899114 -19887341 - MIR SINE MIR -80 128 28 353 281 21 0 chr12 123899333 123899429 -19887026 - MIR SINE MIR -13 249 152 2503 221 17 20 chr12 123899504 123899852 -19886603 - MLT1F LTR MaLR 0 542 195 2204 178 24 22 chr12 123899852 123900306 -19886149 - MSTB2 LTR MaLR -2 455 1 2503 221 17 20 chr12 123900306 123900499 -19885956 - MLT1F LTR MaLR -347 195 3 1219 209 116 8 chr12 123900511 123900779 -19885676 + AluJo SINE Alu 1 297 -5 333 293 8 8 chr12 123901940 123902063 -19884392 - MIR3 SINE MIR -81 127 5 309 308 92 0 chr12 123902526 123902646 -19883809 - MIR SINE MIR -22 240 110 271 320 127 28 chr12 123902912 123903093 -19883362 - MIR SINE MIR -3 259 61 2312 191 60 25 chr12 123903116 123903603 -19882852 + MLT1D LTR MaLR 2 505 0 210 143 0 0 chr12 123904511 123904546 -19881909 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 24 67 0 0 chr12 123904828 123904873 -19881582 + AT_rich Low_complexity Low_complexity 1 45 0 574 223 74 0 chr12 123904955 123905103 -19881352 - MIR SINE MIR -59 203 45 468 0 0 0 chr12 123905262 123905314 -19881141 + (TG)n Simple_repeat Simple_repeat 1 52 0 1484 171 51 12 chr12 123905322 123905579 -19880876 - AluJb SINE Alu -45 267 1 380 269 69 37 chr12 123905936 123906237 -19880218 + L2 LINE L2 2670 2984 -329 252 246 66 57 chr12 123906329 123906384 -19880071 + MIR3 SINE MIR 33 86 -122 2411 95 0 0 chr12 123906384 123906689 -19879766 - AluSg SINE Alu -5 305 1 252 246 66 57 chr12 123906689 123906755 -19879700 + MIR3 SINE MIR 86 155 -53 361 301 15 22 chr12 123906773 123906909 -19879546 - LTR16B LTR ERVL -4 460 326 249 279 39 39 chr12 123906960 123907089 -19879366 - LTR16B LTR ERVL -232 232 104 3546 166 18 8 chr12 123907517 123908168 -19878287 + L1MB3 LINE L1 5526 6183 0 227 330 25 17 chr12 123908190 123908308 -19878147 + MIR SINE MIR 36 154 -108 255 159 23 0 chr12 123909156 123909200 -19877255 - MLT1J2 LTR MaLR -15 435 391 800 254 106 35 chr12 123909231 123909280 -19877175 - MLT1J2 LTR MaLR -144 306 262 895 178 32 27 chr12 123909280 123909465 -19876990 - MER5A DNA MER1_type 0 189 4 800 254 106 35 chr12 123909465 123909699 -19876756 - MLT1J2 LTR MaLR -188 262 3 459 298 20 7 chr12 123909713 123909864 -19876591 - MIR SINE MIR -76 186 34 275 237 87 69 chr12 123909903 123910076 -19876379 - MIR SINE MIR -26 236 61 185 309 37 0 chr12 123910436 123910517 -19875938 - MIR SINE MIR -112 150 67 398 225 62 16 chr12 123910655 123910784 -19875671 + MIR SINE MIR 36 170 -92 334 236 188 56 chr12 123910826 123911076 -19875379 - L2 LINE L2 -5 3308 3026 266 319 148 29 chr12 123911118 123911200 -19875255 - L2 LINE L2 -2048 1266 1195 1603 183 115 8 chr12 123911200 123911556 -19874899 - MLT2C1 LTR ERVL -1 396 3 266 319 148 29 chr12 123911556 123911893 -19874562 - L2 LINE L2 -2119 1195 797 328 200 14 14 chr12 123911952 123912022 -19874433 + MIR SINE MIR 81 150 -58 1011 201 26 82 chr12 123912076 123912192 -19874263 + MER33 DNA MER1_type 1 122 -2463 387 0 0 0 chr12 123912192 123912235 -19874220 + (CA)n Simple_repeat Simple_repeat 2 44 0 1011 201 26 82 chr12 123912235 123912313 -19874142 + MER33 DNA MER1_type 122 203 -2382 1990 137 3 0 chr12 123912313 123912597 -19873858 + AluJb SINE Alu 21 305 -7 1011 201 26 82 chr12 123912597 123912744 -19873711 + MER33 DNA MER1_type 203 324 0 1595 201 30 6 chr12 123912752 123913085 -19873370 + MER58B DNA MER1_type 1 341 0 302 263 131 0 chr12 123913232 123913369 -19873086 - MIR SINE MIR -25 237 83 464 214 29 0 chr12 123913898 123914001 -19872454 + MIR SINE MIR 49 154 -108 1022 249 84 62 chr12 123914242 123914680 -19871775 + MLT1J2 LTR MaLR 1 448 -2 1538 194 100 7 chr12 123914755 123915065 -19871390 + MLT1F LTR MaLR 204 542 0 779 285 95 4 chr12 123915066 123915319 -19871136 - LTR16C LTR ERVL -140 351 76 1762 210 12 3 chr12 123916284 123916618 -19869837 + MER58B DNA MER1_type 1 337 -4 2341 83 0 38 chr12 123917191 123917505 -19868950 + AluY SINE Alu 1 302 -9 1290 251 33 30 chr12 123917590 123917952 -19868503 - MSTD LTR MaLR -33 363 1 406 299 28 23 chr12 123918049 123918266 -19868189 - L1ME LINE L1 -346 5775 5558 297 0 0 0 chr12 123918299 123918332 -19868123 + (CA)n Simple_repeat Simple_repeat 1 33 0 1254 248 98 25 chr12 123918332 123919057 -19867398 - L2 LINE L2 -6 3307 2538 494 95 42 0 chr12 123919083 123919178 -19867277 + (TGGA)n Simple_repeat Simple_repeat 4 102 0 298 217 35 119 chr12 123919325 123919468 -19866987 - MIR SINE MIR -79 183 53 396 276 163 27 chr12 123920015 123920236 -19866219 + MIR SINE MIR 11 261 -1 368 284 26 9 chr12 123922295 123922411 -19864044 - MIR SINE MIR -96 166 49 1369 225 52 65 chr12 123922612 123923075 -19863380 - LTR16A1 LTR ERVL 0 457 1 262 326 11 0 chr12 123923311 123923400 -19863055 + L1ME4a LINE L1 5727 5816 -305 1174 253 81 40 chr12 123923431 123923495 -19862960 + L2 LINE L2 2596 2656 -657 2144 208 22 78 chr12 123923495 123924082 -19862373 - MLT2B3 LTR ERVL 0 554 1 1174 253 81 40 chr12 123924082 123924487 -19861968 + L2 LINE L2 2656 3100 -213 420 20 0 0 chr12 123924487 123924536 -19861919 + (CA)n Simple_repeat Simple_repeat 2 50 0 1174 253 81 40 chr12 123924536 123924759 -19861696 + L2 LINE L2 3100 3313 0 347 266 106 15 chr12 123924820 123925019 -19861436 + L1ME4a LINE L1 5882 6098 -23 247 221 8 47 chr12 123925284 123925411 -19861044 + GA-rich Low_complexity Low_complexity 1 122 0 * 451 176 0 28 chr12 123925383 123925491 -19860964 + G-rich Low_complexity Low_complexity 3 107 0 305 264 36 43 chr12 123925782 123925922 -19860533 - MIR SINE MIR -75 187 49 616 272 123 0 chr12 123926445 123926640 -19859815 - MIR SINE MIR -15 247 29 734 277 24 66 chr12 123927098 123927387 -19859068 + Charlie8 DNA MER1_type 4 280 -2137 3745 67 1 4 chr12 123927398 123927857 -19858598 - MLT2A2 LTR ERVL 0 446 1 204 40 0 0 chr12 123929022 123929047 -19857408 + (T)n Simple_repeat Simple_repeat 1 25 0 404 215 0 0 chr12 123929416 123929495 -19856960 + MIR3 SINE MIR 81 159 -49 3021 245 72 19 chr12 123929925 123930845 -19855610 - MER69B DNA AcHobo -1 1225 257 6184 140 30 10 chr12 123930950 123932024 -19854431 + L1MC1 LINE L1 5237 6332 -1 508 222 19 0 chr12 123932026 123932134 -19854321 - MER69B DNA AcHobo -1097 129 20 235 295 213 29 chr12 123932366 123932573 -19853882 - MIR SINE MIR -2 260 16 988 215 138 87 chr12 123932734 123933218 -19853237 - LTR33A LTR ERVL -8 515 7 180 325 66 30 chr12 123933973 123934139 -19852316 + L2 LINE L2 2890 3061 -252 1054 212 22 22 chr12 123934227 123934427 -19852028 + MER58A DNA MER1_type 1 203 -2217 387 0 0 0 chr12 123934427 123934470 -19851985 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1054 212 22 22 chr12 123934470 123934491 -19851964 + MER58A DNA MER1_type 202 222 -2 26 82 0 0 chr12 123934577 123934638 -19851817 + AT_rich Low_complexity Low_complexity 1 61 0 452 234 39 47 chr12 123934963 123935091 -19851364 + L2 LINE L2 3187 3313 0 23 0 0 0 chr12 123935198 123935221 -19851234 + AT_rich Low_complexity Low_complexity 1 23 0 2017 113 38 20 chr12 123935226 123935519 -19850936 + AluSx SINE Alu 1 298 -14 3799 102 9 11 chr12 123935566 123936117 -19850338 - L1PA16 LINE L1 0 6166 5617 2221 131 14 0 chr12 123936117 123936521 -19849934 + L1PA16 LINE L1 5182 5590 -576 225 280 62 95 chr12 123936574 123936995 -19849460 + L2 LINE L2 2254 2660 -654 1417 248 90 27 chr12 123937583 123938026 -19848429 - MLT1J LTR MaLR -8 503 33 225 313 24 12 chr12 123938192 123938275 -19848180 - L2 LINE L2 -1 3271 3188 25 0 0 0 chr12 123938522 123938547 -19847908 + AT_rich Low_complexity Low_complexity 1 25 0 2084 124 0 10 chr12 123940110 123940401 -19846054 + AluSx SINE Alu 1 288 -24 303 264 44 11 chr12 123940416 123940507 -19845948 + L1MC4 LINE L1 6607 6700 -1342 2065 249 47 19 chr12 123940508 123941079 -19845376 + L1ME2 LINE L1 5569 6155 -9 209 116 47 23 chr12 123941085 123941128 -19845327 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 384 268 0 47 chr12 123941137 123941264 -19845191 + L2 LINE L2 2930 3050 -263 732 294 119 28 chr12 123941455 123941652 -19844803 + LTR33 LTR ERVL 40 217 -304 1031 159 103 0 chr12 123941652 123941847 -19844608 + MER20 DNA MER1_type 1 215 -4 732 294 119 28 chr12 123941847 123942084 -19844371 + LTR33 LTR ERVL 217 514 -7 2369 135 21 56 chr12 123942217 123942684 -19843771 - L1MA10 LINE L1 -2 6332 5882 206 289 26 0 chr12 123942738 123942814 -19843641 - MIR SINE MIR -77 131 54 253 328 94 6 chr12 123943073 123943253 -19843202 + MIR SINE MIR 63 258 -4 375 196 10 6 chr12 123943647 123943748 -19842707 - L1MB1 LINE L1 -212 5956 5855 1783 154 13 26 chr12 123943773 123944085 -19842370 + AluJb SINE Alu 1 308 -4 217 241 19 0 chr12 123944319 123944373 -19842082 + MIR SINE MIR 126 180 -82 2342 45 11 0 chr12 123944379 123944689 -19841766 - L1P3 LINE L1 -606 5548 5236 648 48 12 0 chr12 123944689 123944752 -19841703 + L1PA7 LINE L1 6067 6150 -4 261 296 46 53 chr12 123944875 123945027 -19841428 - HAL1b LINE L1 0 1348 1198 240 270 16 0 chr12 123945091 123945154 -19841301 + MIR SINE MIR 77 140 -122 1498 202 46 70 chr12 123945166 123945582 -19840873 - MLT1C LTR MaLR -9 458 53 181 319 97 9 chr12 123945631 123945744 -19840711 + MIR SINE MIR 138 260 -2 337 317 43 32 chr12 123946339 123946525 -19839930 + MIR3 SINE MIR 7 194 -14 657 163 17 17 chr12 123947256 123947428 -19839027 + CT-rich Low_complexity Low_complexity 2 173 0 958 270 79 49 chr12 123947566 123948037 -19838418 - LTR16C LTR ERVL 0 491 7 388 293 41 20 chr12 123948038 123948185 -19838270 - MIR SINE MIR -105 157 8 577 264 39 11 chr12 123948460 123948638 -19837817 + MIR SINE MIR 80 262 0 628 283 69 33 chr12 123948946 123949467 -19836988 + L2 LINE L2 2639 3169 -144 815 118 8 0 chr12 123949603 123949722 -19836733 + MER20 DNA MER1_type 95 214 -5 421 242 17 33 chr12 123949730 123949850 -19836605 + L2 LINE L2 3192 3309 -4 198 0 0 0 chr12 123950304 123950326 -19836129 + (A)n Simple_repeat Simple_repeat 1 22 0 184 296 28 14 chr12 123950922 123950993 -19835462 - L2 LINE L2 -1 3312 3241 467 246 22 8 chr12 123951032 123951166 -19835289 + MIR SINE MIR 49 184 -78 200 211 0 0 chr12 123951299 123951337 -19835118 - L2 LINE L2 -19 3253 3216 284 323 30 20 chr12 123951387 123951623 -19834832 + MLT1J2 LTR MaLR 3 240 -169 391 289 14 28 chr12 123951636 123951778 -19834677 + LTR16C LTR ERVL 308 447 -44 180 0 0 0 chr12 123951881 123951901 -19834554 + (A)n Simple_repeat Simple_repeat 1 20 0 626 257 7 0 chr12 123951972 123952108 -19834347 + MLT1I LTR MaLR 258 394 -15 349 344 11 38 chr12 123952117 123952300 -19834155 - MIR SINE MIR -81 181 4 866 219 128 76 chr12 123952724 123952848 -19833607 + LTR16C LTR ERVL 189 305 -186 697 132 63 69 chr12 123952848 123952979 -19833476 + MER53 DNA DNA 2 133 -56 2238 116 0 0 chr12 123952979 123953273 -19833182 + AluSg SINE Alu 1 294 -16 697 132 63 69 chr12 123953273 123953330 -19833125 + MER53 DNA DNA 133 189 0 866 219 128 76 chr12 123953330 123953493 -19832962 + LTR16C LTR ERVL 305 491 0 4624 153 27 44 chr12 123953577 123953843 -19832612 + L1MB1 LINE L1 5079 5348 -820 2207 132 0 0 chr12 123953843 123954146 -19832309 + AluSx SINE Alu 3 305 -7 4624 153 27 44 chr12 123954146 123954965 -19831490 + L1MB1 LINE L1 5348 6168 0 494 317 55 10 chr12 123955314 123955559 -19830896 + MIR SINE MIR 10 262 0 406 290 70 38 chr12 123957371 123957557 -19828898 - MIR SINE MIR -40 222 31 1713 39 0 0 chr12 123957668 123957875 -19828580 - L1PA4 LINE L1 0 6155 5949 8144 21 2 2 chr12 123957875 123958850 -19827605 + L1P LINE L1 2314 3288 -2858 251 250 88 0 chr12 123958950 123959030 -19827425 - MER117 DNA MER1_type -108 89 3 502 256 87 50 chr12 123959741 123959983 -19826472 + MLT1L LTR MaLR 363 613 -2 403 263 0 0 chr12 123960223 123960322 -19826133 + MLT1J LTR MaLR 6 104 -407 247 43 0 64 chr12 123960322 123960369 -19826086 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 722 253 106 44 chr12 123960391 123960758 -19825697 + MLT1J LTR MaLR 120 509 -2 258 32 0 0 chr12 123960987 123961018 -19825437 + (TC)n Simple_repeat Simple_repeat 2 32 0 674 282 37 16 chr12 123961585 123961773 -19824682 - LTR16A LTR ERVL -30 420 229 237 217 0 0 chr12 123961968 123962014 -19824441 - L2 LINE L2 0 3313 3268 212 103 0 0 chr12 123962624 123962653 -19823802 + MIR SINE MIR 116 144 -118 192 152 22 87 chr12 123962625 123962671 -19823784 + MIR3 SINE MIR 118 160 -48 * 1193 287 98 20 chr12 123962739 123963285 -19823170 + L2 LINE L2 2464 3054 -259 1797 155 6 22 chr12 123963305 123963622 -19822833 - AluJo SINE Alu 0 312 1 230 98 24 24 chr12 123963645 123963686 -19822769 + (TCTCC)n Simple_repeat Simple_repeat 5 45 0 695 149 29 11 chr12 123963688 123963863 -19822592 + CT-rich Low_complexity Low_complexity 1 178 0 345 305 0 0 chr12 123963963 123964045 -19822410 + L2 LINE L2 3221 3302 -11 359 259 12 0 chr12 123964349 123964430 -19822025 - MIR3 SINE MIR -22 186 105 248 286 161 27 chr12 123964681 123964793 -19821662 + L2 LINE L2 3182 3308 -5 22 0 0 0 chr12 123964928 123964950 -19821505 + AT_rich Low_complexity Low_complexity 1 22 0 719 269 34 77 chr12 123965296 123965594 -19820861 + MER102b DNA MER1_type 27 311 -30 436 328 8 8 chr12 123965629 123965751 -19820704 - MIR SINE MIR -64 144 23 1479 223 25 66 chr12 123965796 123966281 -19820174 - MLT1C LTR MaLR -2 465 1 180 200 0 0 chr12 123966511 123966551 -19819904 + (TAA)n Simple_repeat Simple_repeat 2 41 0 649 275 16 11 chr12 123966553 123966742 -19819713 - MIR SINE MIR -58 204 15 365 267 78 44 chr12 123967376 123967582 -19818873 + HAL1 LINE L1 1246 1458 -1049 527 246 76 6 chr12 123967768 123967939 -19818516 - MIR SINE MIR -2 260 78 536 45 0 0 chr12 123968195 123968261 -19818194 + THE1A LTR MaLR 1 66 -289 6614 101 7 2 chr12 123968265 123969144 -19817311 + THE1A-int LTR MaLR 698 1580 0 2703 99 0 0 chr12 123969144 123969499 -19816956 + THE1A LTR MaLR 1 355 0 601 300 80 50 chr12 123969582 123970329 -19816126 + L1ME4a LINE L1 5328 6097 -24 701 249 21 7 chr12 123970330 123970513 -19815942 + MLT1I LTR MaLR 2 191 -238 559 151 0 92 chr12 123970541 123970660 -19815795 + MLT1I LTR MaLR 298 405 -4 2105 133 0 0 chr12 123970672 123970973 -19815482 - AluSx SINE Alu -11 301 1 1633 163 65 10 chr12 123971056 123971350 -19815105 + AluJb SINE Alu 2 311 -1 331 357 38 16 chr12 123971485 123971670 -19814785 + MIR SINE MIR 2 190 -72 320 285 89 16 chr12 123971681 123971804 -19814651 + MER94 DNA DNA 3 134 0 608 248 121 0 chr12 123971807 123971964 -19814491 - MER5B DNA MER1_type 0 178 3 869 183 18 91 chr12 123972201 123972244 -19814211 + MER20 DNA MER1_type 17 62 -157 1350 171 6 98 chr12 123972244 123972571 -19813884 - AluJo SINE Alu -15 297 1 869 183 18 91 chr12 123972571 123972746 -19813709 + MER20 DNA MER1_type 62 219 0 222 214 0 0 chr12 123973239 123973281 -19813174 + GA-rich Low_complexity Low_complexity 2 43 0 441 265 0 0 chr12 123973298 123973468 -19812987 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 339 274 17 17 chr12 123973593 123973772 -19812683 + CT-rich Low_complexity Low_complexity 1 179 0 193 237 34 0 chr12 123973763 123973822 -19812633 + C-rich Low_complexity Low_complexity 2 62 0 * 750 170 14 14 chr12 123973998 123974139 -19812316 - FLAM_C SINE Alu -2 141 1 742 189 11 69 chr12 123974139 123974314 -19812141 + MER20 DNA MER1_type 55 219 0 207 254 17 17 chr12 123974808 123974867 -19811588 + GA-rich Low_complexity Low_complexity 2 60 0 321 285 4 4 chr12 123974867 123975036 -19811419 + (TGGA)n Simple_repeat Simple_repeat 1 206 -60 249 57 0 0 chr12 123975036 123975071 -19811384 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 321 285 4 4 chr12 123975071 123975133 -19811322 + (TGGA)n Simple_repeat Simple_repeat 205 266 0 649 235 12 19 chr12 123975263 123975425 -19811030 + MER5B DNA MER1_type 15 175 -3 529 264 50 70 chr12 123975557 123975758 -19810697 + MIR SINE MIR 25 221 -41 689 221 39 11 chr12 123975817 123975998 -19810457 - MIR SINE MIR 0 262 77 508 181 8 15 chr12 123976000 123976133 -19810322 + (TGGA)n Simple_repeat Simple_repeat 4 135 0 245 89 22 0 chr12 123976160 123976205 -19810250 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 333 330 18 9 chr12 123976582 123976691 -19809764 - L2 LINE L2 -1 3271 3162 224 329 70 51 chr12 123977190 123977348 -19809107 + MIR SINE MIR 99 259 -3 510 278 101 6 chr12 123977356 123977525 -19808930 + MIR SINE MIR 12 196 -66 201 171 0 0 chr12 123977562 123977597 -19808858 + (TTA)n Simple_repeat Simple_repeat 2 36 0 674 230 7 7 chr12 123977725 123977873 -19808582 - MER69 DNA AcHobo -2378 148 1 207 88 0 0 chr12 123977881 123977915 -19808540 + (T)n Simple_repeat Simple_repeat 1 34 0 220 220 0 34 chr12 123978370 123978429 -19808026 + G-rich Low_complexity Low_complexity 1 57 0 274 318 82 51 chr12 123978749 123979004 -19807451 + L2 LINE L2 2623 2885 -429 1762 172 3 0 chr12 123979077 123979380 -19807075 - AluJb SINE Alu -8 304 1 309 257 14 0 chr12 123979613 123979683 -19806772 + L2 LINE L2 3237 3307 -6 196 286 161 9 chr12 123980283 123980395 -19806060 - MIR SINE MIR -17 245 117 2504 165 52 12 chr12 123980752 123981237 -19805218 + L1MB3 LINE L1 5679 6182 -1 1579 188 3 10 chr12 123981281 123981595 -19804860 + AluJo SINE Alu 1 312 0 211 158 18 18 chr12 123982947 123983004 -19803451 + CT-rich Low_complexity Low_complexity 1 57 0 288 286 135 56 chr12 123983441 123983619 -19802836 + MIR SINE MIR 6 197 -65 204 175 12 50 chr12 123983652 123983732 -19802723 + (CATA)n Simple_repeat Simple_repeat 3 79 0 541 33 411 0 chr12 123983848 123983938 -19802517 + L1PA16 LINE L1 6029 6155 -11 234 207 17 35 chr12 123984150 123984208 -19802247 - MIR SINE MIR -171 91 35 197 256 0 0 chr12 123984790 123984829 -19801626 - MIR SINE MIR -3 259 221 258 81 0 0 chr12 123984847 123984884 -19801571 + (TG)n Simple_repeat Simple_repeat 2 38 0 909 223 166 92 chr12 123984888 123985399 -19801056 - MLT1H LTR MaLR 0 549 1 1313 282 58 38 chr12 123985424 123985903 -19800552 - L2 LINE L2 0 3313 2825 365 260 110 56 chr12 123985908 123986072 -19800383 - MIR3 SINE MIR -76 132 2 1461 68 26 0 chr12 123986402 123986594 -19799861 - L1PA13 LINE L1 -1 6162 5966 967 302 134 17 chr12 123986834 123987509 -19798946 - L2 LINE L2 0 3313 2561 1805 139 4 0 chr12 123987509 123987782 -19798673 + AluSq SINE Alu 1 274 -39 384 316 52 15 chr12 123987931 123988067 -19798388 - L2 LINE L2 -217 3055 2915 230 226 19 0 chr12 123988982 123989035 -19797420 + L2 LINE L2 3219 3272 0 953 115 0 28 chr12 123989241 123989423 -19797032 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 414 175 18 48 chr12 123989423 123989589 -19796866 + GA-rich Low_complexity Low_complexity 4 164 0 219 233 0 35 chr12 123989602 123989688 -19796767 + (CGGGA)n Simple_repeat Simple_repeat 3 85 0 28 0 0 0 chr12 123990318 123990346 -19796109 + GC_rich Low_complexity Low_complexity 1 28 0 239 214 0 90 chr12 123990442 123990531 -19795924 + G-rich Low_complexity Low_complexity 5 85 0 2033 108 34 3 chr12 123990665 123990961 -19795494 + AluSg SINE Alu 3 307 -3 238 270 142 34 chr12 123990961 123991165 -19795290 + L1ME4a LINE L1 5856 6081 -40 462 310 21 31 chr12 123991669 123991911 -19794544 + MIR3 SINE MIR 3 241 -21 461 308 30 0 chr12 123991854 123991987 -19794468 - MIR SINE MIR 0 262 126 * 282 316 53 23 chr12 123992048 123992181 -19794274 - MIR SINE MIR -70 192 56 204 237 0 178 chr12 123993397 123993515 -19792940 - L2 LINE L2 -24 3248 3152 259 178 0 0 chr12 123993572 123993617 -19792838 - L2 LINE L2 -4 3268 3224 236 309 49 0 chr12 123993848 123993929 -19792526 - L2 LINE L2 0 3272 3188 3467 89 0 0 chr12 123993957 123994419 -19792036 + L1PA5 LINE L1 5691 6152 -2 276 30 0 0 chr12 123994422 123994455 -19792000 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 2134 94 7 0 chr12 123994623 123994910 -19791545 + AluSq SINE Alu 1 289 -24 392 260 21 10 chr12 123995006 123995102 -19791353 + MIR SINE MIR 52 148 -60 757 223 38 11 chr12 123995187 123995371 -19791084 - MIR SINE MIR -1 261 73 2006 239 133 6 chr12 123995540 123996066 -19790389 - MLT1E LTR MaLR 0 593 1 1175 101 0 0 chr12 123996086 123996245 -19790210 + L1MA1 LINE L1 6144 6302 0 190 302 33 7 chr12 123996451 123996540 -19789915 + MIR SINE MIR 111 203 -59 939 249 65 0 chr12 123996545 123996774 -19789681 - MIR SINE MIR -15 247 4 352 240 183 0 chr12 123996938 123997042 -19789413 + L2 LINE L2 3143 3265 -7 199 241 74 0 chr12 123997342 123997396 -19789059 - MIR SINE MIR -118 144 87 1075 236 28 13 chr12 123997400 123997652 -19788803 + MLT1H LTR MaLR 3 221 -225 597 211 74 48 chr12 123997684 123997986 -19788469 + MLT1H LTR MaLR 218 549 0 194 368 11 11 chr12 123998227 123998314 -19788141 + L2 LINE L2 2956 3042 -230 762 284 113 35 chr12 123998489 123998999 -19787456 - L2 LINE L2 -1 3312 2754 361 289 78 8 chr12 123999450 123999578 -19786877 + MIR3 SINE MIR 58 194 -14 376 257 17 36 chr12 123999625 123999770 -19786685 + L1MC2 LINE L1 5490 5606 -515 906 184 102 39 chr12 123999795 124000001 -19786454 + MER20 DNA MER1_type 1 219 0 596 283 11 23 chr12 124000168 124000345 -19786110 + MIR SINE MIR 14 188 -74 665 300 9 24 chr12 124000567 124000777 -19785678 - MIR SINE MIR -40 222 16 328 246 15 0 chr12 124000889 124000954 -19785501 - MER81 DNA DNA -43 71 6 605 275 155 10 chr12 124001297 124001490 -19784965 + MIR SINE MIR 42 262 0 189 107 0 0 chr12 124001918 124001946 -19784509 + (A)n Simple_repeat Simple_repeat 1 28 0 853 229 108 5 chr12 124002555 124002778 -19783677 + MIR SINE MIR 17 262 0 185 196 20 0 chr12 124003559 124003610 -19782845 + (CCA)n Simple_repeat Simple_repeat 3 54 0 339 228 6 19 chr12 124003622 124003784 -19782671 + (CCA)n Simple_repeat Simple_repeat 1 160 0 197 322 68 0 chr12 124004043 124004102 -19782353 + MIR SINE MIR 20 82 -180 512 222 19 0 chr12 124004536 124004644 -19781811 + MER69 DNA AcHobo 20 129 -2397 2990 174 58 18 chr12 124004646 124005324 -19781131 - L1MC1 LINE L1 -1 6332 5628 1734 128 0 50 chr12 124005467 124005764 -19780691 - AluSx SINE Alu -30 282 1 514 281 150 7 chr12 124005803 124005956 -19780499 - MER5A DNA MER1_type -2 187 13 238 288 0 0 chr12 124006206 124006286 -19780169 + C-rich Low_complexity Low_complexity 1 80 0 1887 196 26 35 chr12 124007593 124007970 -19778485 + MLT1A2 LTR MaLR 1 374 0 3144 164 39 35 chr12 124007994 124008359 -19778096 + L1MC2 LINE L1 5734 6103 -241 1806 135 3 85 chr12 124008359 124008699 -19777756 + AluJo SINE Alu 1 312 0 3144 164 39 35 chr12 124008699 124008929 -19777526 + L1MC2 LINE L1 6103 6331 -13 237 275 17 50 chr12 124009094 124009214 -19777241 - Charlie7 DNA MER1_type -3 2609 2494 381 326 33 17 chr12 124009220 124009401 -19777054 - LTR16C LTR ERVL 0 491 308 262 281 49 0 chr12 124009757 124009839 -19776616 - Charlie7 DNA MER1_type -2522 90 5 4827 109 7 9 chr12 124009959 124010598 -19775857 + L1MC1 LINE L1 5434 6073 -260 2329 135 43 0 chr12 124010598 124010947 -19775508 - THE1B LTR MaLR 0 364 1 4827 109 7 9 chr12 124010947 124010994 -19775461 + L1MC1 LINE L1 6073 6119 -214 438 194 97 0 chr12 124011672 124011765 -19774690 + MER5A DNA MER1_type 4 105 -84 317 232 12 12 chr12 124011995 124012077 -19774378 - MER113 DNA MER1_type? -109 412 331 456 225 155 14 chr12 124012411 124012553 -19773902 - MER117 DNA MER1_type -4 193 32 862 202 163 30 chr12 124012717 124013123 -19773332 + L1M4 LINE L1 2800 3259 -2887 1285 278 87 29 chr12 124013168 124013820 -19772635 + L1M4 LINE L1 3329 4018 -2128 2187 133 33 3 chr12 124013897 124014229 -19772226 - L1PA16 LINE L1 -20 6146 5805 416 242 180 8 chr12 124014412 124014540 -19771915 + MLT1K LTR MaLR 109 258 -330 981 251 73 33 chr12 124014997 124015327 -19771128 + MLT1K LTR MaLR 242 584 -4 801 225 79 1 chr12 124015618 124015841 -19770614 - MIR SINE MIR -17 245 3 429 260 53 7 chr12 124016156 124016276 -19770179 + Charlie7 DNA MER1_type 574 704 -1908 1070 259 59 6 chr12 124016276 124016597 -19769858 + MER46C DNA MER2_type 1 338 0 429 260 53 7 chr12 124016597 124016626 -19769829 + Charlie7 DNA MER1_type 704 730 -1882 272 238 12 12 chr12 124016598 124016682 -19769773 + Charlie7 DNA MER1_type 2512 2595 -17 * 1806 173 0 17 chr12 124016829 124017124 -19769331 - AluJo SINE Alu -16 296 7 312 230 23 29 chr12 124017209 124017383 -19769072 + GA-rich Low_complexity Low_complexity 2 174 0 370 69 69 35 chr12 124017620 124017678 -19768777 + L1PA6 LINE L1 6089 6148 -6 2659 241 30 18 chr12 124017712 124018389 -19768066 + L1MC4a LINE L1 7123 7807 -1 892 234 127 61 chr12 124018422 124018948 -19767507 + L1ME4a LINE L1 5504 6064 -57 363 157 37 83 chr12 124019203 124019311 -19767144 + MER46A DNA MER2_type 54 156 -80 2323 103 0 10 chr12 124020221 124020532 -19765923 + AluSg SINE Alu 1 308 -2 289 370 67 32 chr12 124021119 124021403 -19765052 - L2 LINE L2 -809 2505 2212 1981 146 0 0 chr12 124021587 124021868 -19764587 - AluJb SINE Alu -19 293 13 4356 142 6 6 chr12 124021876 124022529 -19763926 - L1PA16 LINE L1 -19 6147 5495 2238 94 3 0 chr12 124022529 124022816 -19763639 - AluY SINE Alu -23 288 1 1146 277 25 77 chr12 124022984 124023464 -19762991 - LTR16B LTR ERVL 0 464 10 21 0 0 0 chr12 124023600 124023621 -19762834 + AT_rich Low_complexity Low_complexity 1 21 0 1946 141 0 0 chr12 124023786 124024070 -19762385 - AluSx SINE Alu -23 289 6 1908 135 17 7 chr12 124024339 124024635 -19761820 + 7SLRNA srpRNA srpRNA 22 320 0 235 273 101 81 chr12 124024980 124025016 -19761439 + MIR SINE MIR 50 84 -178 2111 180 16 22 chr12 124025016 124025383 -19761072 - MLT1A1 LTR MaLR 0 365 1 235 273 101 81 chr12 124025383 124025555 -19760900 + MIR SINE MIR 84 262 0 213 139 0 0 chr12 124025833 124025876 -19760579 + (GA)n Simple_repeat Simple_repeat 2 44 0 1604 214 60 46 chr12 124026783 124027237 -19759218 + L1ME3 LINE L1 5618 6077 -85 483 63 0 0 chr12 124027237 124027300 -19759155 + (CA)n Simple_repeat Simple_repeat 2 64 0 211 200 0 0 chr12 124027350 124027390 -19759065 + GA-rich Low_complexity Low_complexity 4 43 0 271 276 71 31 chr12 124027393 124027491 -19758964 - MIR SINE MIR -157 105 4 620 263 85 25 chr12 124028135 124028371 -19758084 + MIR SINE MIR 10 259 -3 248 220 40 0 chr12 124028553 124028603 -19757852 + L3 LINE CR1 1525 1576 -1 520 390 36 14 chr12 124028999 124029492 -19756963 - HERV16 LTR ERVL -662 5102 4599 1057 293 48 3 chr12 124029529 124029843 -19756612 - HERV16 LTR ERVL -1168 4486 4159 690 308 52 38 chr12 124029851 124030270 -19756185 - HERV16 LTR ERVL -1215 3781 3357 303 239 0 0 chr12 124030270 124030341 -19756114 - HERV16 LTR ERVL -4189 807 737 1415 351 33 17 chr12 124030547 124031245 -19755210 - HERV16 LTR ERVL -4285 711 3 1835 274 31 11 chr12 124031247 124031700 -19754755 - LTR16B LTR ERVL 0 464 3 226 363 12 25 chr12 124031721 124031801 -19754654 - L2 LINE L2 -24 3248 3170 617 165 58 0 chr12 124031978 124032081 -19754374 + Tigger3(Golem) DNA MER2_type 2920 3028 -1 616 236 20 193 chr12 124032083 124032370 -19754085 - L2 LINE L2 -937 2377 2042 1383 193 0 13 chr12 124032370 124032609 -19753846 - MER46A DNA MER2_type 0 236 1 616 236 20 193 chr12 124032609 124032772 -19753683 - L2 LINE L2 -1272 2042 2093 2322 129 135 5 chr12 124032772 124033151 -19753304 + MSTA LTR MaLR 1 428 0 616 236 20 193 chr12 124033151 124033414 -19753041 - L2 LINE L2 -1220 2094 1787 243 236 0 0 chr12 124033623 124033695 -19752760 + (CA)n Simple_repeat Simple_repeat 1 72 0 732 274 59 102 chr12 124034312 124034754 -19751701 + MLT1K LTR MaLR 151 573 -15 206 319 193 8 chr12 124035091 124035210 -19751245 - MIR SINE MIR -118 144 4 354 312 129 15 chr12 124035219 124035421 -19751034 - MIR SINE MIR -6 256 32 182 372 124 16 chr12 124035680 124035809 -19750646 - L2 LINE L2 -257 3015 2873 585 293 27 5 chr12 124035812 124036000 -19750455 + MER117 DNA MER1_type 2 193 -4 556 226 154 18 chr12 124036566 124036787 -19749668 - MIR SINE MIR -1 261 11 1194 265 70 23 chr12 124037745 124038130 -19748325 - MLT1I LTR MaLR 0 409 7 554 297 158 10 chr12 124038196 124038398 -19748057 - MIR SINE MIR -14 248 17 369 267 37 41 chr12 124038552 124038721 -19747734 - MIR SINE MIR -51 211 40 476 257 29 0 chr12 124039024 124039164 -19747291 - MER117 DNA MER1_type -49 148 5 1513 185 165 53 chr12 124039164 124039655 -19746800 - MLT1H1 LTR MaLR 0 555 10 495 287 30 6 chr12 124039815 124039979 -19746476 - MIR SINE MIR -14 248 81 934 204 124 0 chr12 124040289 124040475 -19745980 + MER3 DNA MER1_type 1 209 0 183 114 0 0 chr12 124041320 124041355 -19745100 + (A)n Simple_repeat Simple_repeat 1 35 0 987 250 21 40 chr12 124041356 124041681 -19744774 + Charlie4a DNA MER1_type 62 380 -128 2536 82 5 217 chr12 124041681 124042083 -19744372 - Tigger3(Golem) DNA MER2_type -1 3028 2807 3330 46 5 0 chr12 124042083 124042468 -19743987 + L1PA7 LINE L1 5759 6149 -5 2536 82 5 217 chr12 124042468 124042697 -19743758 - Tigger3(Golem) DNA MER2_type -222 2807 2531 253 250 18 0 chr12 124042701 124042757 -19743698 - Tigger3(Golem) DNA MER2_type -2969 60 4 345 226 255 0 chr12 124042760 124042862 -19743593 + Charlie4a DNA MER1_type 378 505 -3 203 303 79 56 chr12 124043033 124043211 -19743244 - MIR SINE MIR -14 248 67 404 294 103 34 chr12 124043451 124043713 -19742742 + L2 LINE L2 2417 2696 -618 461 259 36 7 chr12 124043755 124043894 -19742561 + MLT1K LTR MaLR 445 587 -1 264 321 0 12 chr12 124043925 124044006 -19742449 + L2 LINE L2 3189 3268 -4 354 169 0 0 chr12 124044448 124044537 -19741918 + (TG)n Simple_repeat Simple_repeat 1 89 0 269 284 26 9 chr12 124044556 124044672 -19741783 + (TG)n Simple_repeat Simple_repeat 1 118 0 186 208 0 0 chr12 124044706 124044759 -19741696 + (TG)n Simple_repeat Simple_repeat 2 54 0 754 251 94 22 chr12 124045119 124045342 -19741113 + MIR SINE MIR 8 246 -16 467 340 64 58 chr12 124045483 124045827 -19740628 + L2 LINE L2 2912 3257 -15 200 241 19 19 chr12 124045853 124045907 -19740548 - MER5A DNA MER1_type 0 189 136 2406 68 3 10 chr12 124045919 124046226 -19740229 + AluY SINE Alu 1 305 -6 330 151 0 0 chr12 124046227 124046280 -19740175 - MER5A DNA MER1_type -111 78 26 3146 150 12 47 chr12 124046338 124046917 -19739538 + L1MA9 LINE L1 5729 6287 -25 23 68 0 0 chr12 124046918 124046962 -19739493 + AT_rich Low_complexity Low_complexity 1 44 0 190 133 0 0 chr12 124047130 124047160 -19739295 + MIR SINE MIR 106 135 -127 505 285 55 4 chr12 124047172 124047377 -19739078 + MIR3 SINE MIR 29 253 -9 1108 140 63 138 chr12 124048217 124048273 -19738182 - MER33 DNA MER1_type -2262 323 264 1522 171 36 21 chr12 124048273 124048553 -19737902 + AluJo SINE Alu 1 284 -28 405 0 0 0 chr12 124048563 124048608 -19737847 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1108 140 63 138 chr12 124048608 124048669 -19737786 - MER33 DNA MER1_type -2330 255 191 1927 144 0 11 chr12 124048669 124048977 -19737478 + AluJb SINE Alu 1 305 0 1108 140 63 138 chr12 124048977 124049195 -19737260 - MER33 DNA MER1_type -2394 191 1 253 219 9 9 chr12 124049360 124049465 -19736990 + CT-rich Low_complexity Low_complexity 2 106 0 504 341 22 22 chr12 124049682 124049911 -19736544 + MIR SINE MIR 29 257 -5 1178 156 0 0 chr12 124050154 124050333 -19736122 - AluJb SINE Alu -5 307 129 507 60 0 0 chr12 124050421 124050488 -19735967 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 2203 300 18 18 chr12 124050658 124051494 -19734961 + L1ME LINE L1 57 892 -5178 203 227 136 23 chr12 124051521 124051609 -19734846 + L3b LINE CR1 1260 1357 -226 235 288 54 9 chr12 124051778 124051889 -19734566 - MIR SINE MIR -65 197 82 2326 243 37 45 chr12 124051891 124052489 -19733966 - MLT1E LTR MaLR 0 593 1 22 0 0 0 chr12 124052729 124052751 -19733704 + AT_rich Low_complexity Low_complexity 1 22 0 355 246 35 105 chr12 124053104 124053275 -19733180 - MER5A DNA MER1_type -2 187 29 1017 192 39 10 chr12 124053310 124053513 -19732942 + MER3 DNA MER1_type 1 209 0 198 0 0 0 chr12 124053824 124053846 -19732609 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 432 225 27 18 chr12 124053995 124054106 -19732349 + MIR3 SINE MIR 82 193 -15 26 30 0 0 chr12 124054148 124054181 -19732274 + AT_rich Low_complexity Low_complexity 1 33 0 221 136 0 23 chr12 124054253 124054297 -19732158 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 928 287 176 7 chr12 124054454 124054868 -19731587 + MLT1K LTR MaLR 84 567 -21 2136 80 4 0 chr12 124054950 124055213 -19731242 - AluSc SINE Alu -13 296 33 21 71 0 0 chr12 124055221 124055263 -19731192 + AT_rich Low_complexity Low_complexity 1 42 0 581 340 4 21 chr12 124055284 124055519 -19730936 - MIR SINE MIR -1 261 31 492 294 29 7 chr12 124055579 124055715 -19730740 + L2 LINE L2 3134 3272 0 443 223 31 54 chr12 124056615 124056745 -19729710 + L2 LINE L2 2932 3058 -214 234 217 0 0 chr12 124056898 124056944 -19729511 + L2 LINE L2 3263 3308 -5 194 288 102 0 chr12 124057162 124057221 -19729234 + L2 LINE L2 2873 2937 -376 1556 195 0 64 chr12 124057548 124057876 -19728579 - AluJo SINE Alu -5 307 1 2146 126 7 0 chr12 124057948 124058241 -19728214 + AluSx SINE Alu 1 295 -17 621 264 58 6 chr12 124058467 124058641 -19727814 + MIR SINE MIR 44 226 -36 213 132 0 0 chr12 124060359 124060397 -19726058 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 124061495 124061516 -19724939 + AT_rich Low_complexity Low_complexity 1 21 0 201 273 0 52 chr12 124062052 124062129 -19724326 + GA-rich Low_complexity Low_complexity 4 76 0 251 154 0 19 chr12 124062156 124062208 -19724247 + GA-rich Low_complexity Low_complexity 3 53 0 21 71 0 0 chr12 124066657 124066699 -19719756 + AT_rich Low_complexity Low_complexity 1 42 0 638 250 27 38 chr12 124066730 124066914 -19719541 - MIR SINE MIR -4 258 77 662 236 120 58 chr12 124067314 124067539 -19718916 + MIR SINE MIR 12 250 -12 379 204 0 23 chr12 124067553 124067685 -19718770 + (ATG)n Simple_repeat Simple_repeat 2 130 0 218 282 243 19 chr12 124067730 124067833 -19718622 - MIR SINE MIR -63 145 20 488 243 37 7 chr12 124068511 124068647 -19717808 - MER117 DNA MER1_type -47 150 11 302 224 12 0 chr12 124068838 124068923 -19717532 + (TTCA)n Simple_repeat Simple_repeat 2 87 0 551 291 48 26 chr12 124069193 124069420 -19717035 - L2 LINE L2 -215 3057 2826 216 356 123 6 chr12 124069422 124069585 -19716870 + L2 LINE L2 2682 2863 -451 299 322 0 76 chr12 124069629 124069747 -19716708 + L2 LINE L2 3189 3297 -16 354 111 12 49 chr12 124069881 124069962 -19716493 + (GGGAA)n Simple_repeat Simple_repeat 3 80 0 348 279 82 14 chr12 124070241 124070395 -19716060 + MIR3 SINE MIR 26 191 -17 208 184 20 0 chr12 124070442 124070491 -19715964 + (TAA)n Simple_repeat Simple_repeat 1 50 0 661 264 34 17 chr12 124070514 124070692 -19715763 - MIR SINE MIR -71 191 11 523 269 67 39 chr12 124070995 124071203 -19715252 + MLT1K LTR MaLR 147 360 -228 363 237 133 30 chr12 124071697 124071832 -19714623 - MIR SINE MIR -66 196 48 2367 93 0 0 chr12 124071860 124072162 -19714293 - AluSc SINE Alu 0 309 8 320 208 130 13 chr12 124072782 124072859 -19713596 - L2 LINE L2 -4 3309 3224 241 362 94 15 chr12 124072864 124073129 -19713326 + L2 LINE L2 2687 2972 -342 424 253 12 16 chr12 124073630 124073800 -19712655 + MIR SINE MIR 21 254 -8 385 279 43 53 chr12 124073891 124074048 -19712407 + MIR SINE MIR 43 192 -65 911 260 113 33 chr12 124074205 124074426 -19712029 - MLT1J1 LTR MaLR -2 444 242 1209 195 27 18 chr12 124074426 124074647 -19711808 + MER58A DNA MER1_type 2 224 0 911 260 113 33 chr12 124074647 124074814 -19711641 - MLT1J1 LTR MaLR -204 242 25 2269 113 0 0 chr12 124074869 124075170 -19711285 + AluSx SINE Alu 1 301 -11 378 287 152 39 chr12 124075311 124075541 -19710914 - MIR SINE MIR 0 262 7 883 264 122 22 chr12 124075622 124075982 -19710473 - LTR33 LTR ERVL -7 514 119 1909 108 0 85 chr12 124076846 124077162 -19709293 + AluSc SINE Alu 1 289 -20 216 306 234 8 chr12 124077429 124077576 -19708879 + MIR SINE MIR 9 166 -42 194 216 0 0 chr12 124078065 124078102 -19708353 + L2 LINE L2 3217 3253 -19 676 220 48 18 chr12 124078170 124078338 -19708117 + MER117 DNA MER1_type 7 179 -18 1945 123 4 0 chr12 124078392 124078669 -19707786 + AluSx SINE Alu 35 312 0 192 138 0 0 chr12 124078724 124078753 -19707702 + MIR SINE MIR 126 154 -108 244 287 70 47 chr12 124079014 124079143 -19707312 + MLT1K LTR MaLR 12 143 -445 808 244 90 0 chr12 124079175 124079376 -19707079 + MER58A DNA MER1_type 6 224 0 255 294 163 15 chr12 124079376 124079544 -19706911 + MLT1K LTR MaLR 148 369 -219 351 313 17 0 chr12 124080124 124080239 -19706216 - MIR SINE MIR -79 183 67 1010 164 6 27 chr12 124080712 124080895 -19705560 - FRAM SINE Alu -4 172 1 781 119 0 0 chr12 124081054 124081155 -19705300 - FLAM_C SINE Alu -32 111 11 892 234 127 61 chr12 124081554 124082080 -19704375 - L1ME4a LINE L1 -57 6064 5504 2659 241 30 18 chr12 124082113 124082790 -19703665 - L1MC4a LINE L1 -1 7807 7123 370 69 69 35 chr12 124082824 124082882 -19703573 - L1PA6 LINE L1 -6 6148 6089 312 230 23 29 chr12 124083119 124083293 -19703162 + CT-rich Low_complexity Low_complexity 2 174 0 1806 173 0 17 chr12 124083378 124083673 -19702782 + AluJo SINE Alu 7 296 -16 272 238 12 12 chr12 124083820 124083904 -19702551 - Charlie7 DNA MER1_type -17 2595 2512 * 429 260 53 7 chr12 124083876 124083905 -19702550 - Charlie7 DNA MER1_type -1882 730 704 1070 259 59 6 chr12 124083905 124084226 -19702229 - MER46C DNA MER2_type 0 338 1 429 260 53 7 chr12 124084226 124084346 -19702109 - Charlie7 DNA MER1_type -1908 704 574 801 225 79 1 chr12 124084661 124084884 -19701571 + MIR SINE MIR 3 245 -17 981 251 73 33 chr12 124085175 124085505 -19700950 - MLT1K LTR MaLR -4 584 242 416 242 180 8 chr12 124085962 124086090 -19700365 - MLT1K LTR MaLR -330 258 109 2187 133 33 3 chr12 124086273 124086605 -19699850 + L1PA16 LINE L1 5805 6146 -20 1285 278 87 29 chr12 124086682 124087334 -19699121 - L1M4 LINE L1 -2128 4018 3329 862 202 163 30 chr12 124087379 124087785 -19698670 - L1M4 LINE L1 -2887 3259 2800 456 225 155 14 chr12 124087949 124088091 -19698364 + MER117 DNA MER1_type 32 193 -4 317 232 12 12 chr12 124088425 124088507 -19697948 + MER113 DNA MER1_type? 331 412 -109 438 194 97 0 chr12 124088737 124088830 -19697625 - MER5A DNA MER1_type -84 105 4 279 0 0 0 chr12 124089822 124089853 -19696602 + (CA)n Simple_repeat Simple_repeat 1 31 0 2288 131 27 24 chr12 124090236 124090609 -19695846 - THE1C LTR MaLR 0 375 2 295 310 90 20 chr12 124090904 124091249 -19695206 + L1ME4a LINE L1 2788 3156 -2990 314 253 42 70 chr12 124091513 124091692 -19694763 + L1ME4a LINE L1 5298 5468 -695 1851 98 8 0 chr12 124091950 124092194 -19694261 + AluSx SINE Alu 63 308 -4 1839 166 7 3 chr12 124092195 124092497 -19693958 + MLT1B LTR MaLR 87 389 -1 241 235 0 25 chr12 124092626 124092707 -19693748 + L1ME4a LINE L1 5960 6038 -83 22 0 0 0 chr12 124092784 124092806 -19693649 + AT_rich Low_complexity Low_complexity 1 22 0 3938 50 0 4 chr12 124092923 124093386 -19693069 - L1PA5 LINE L1 0 6154 5694 923 223 54 9 chr12 124093438 124093662 -19692793 - MIR SINE MIR -27 235 2 490 241 50 48 chr12 124094141 124094314 -19692141 + L1MC4a LINE L1 5718 5837 -333 263 28 28 0 chr12 124094364 124094400 -19692055 + (TG)n Simple_repeat Simple_repeat 2 38 0 568 246 65 35 chr12 124094432 124094631 -19691824 + MIR SINE MIR 40 244 -18 517 313 39 35 chr12 124095248 124095478 -19690977 - MIR SINE MIR -3 259 29 246 195 0 0 chr12 124095801 124095842 -19690613 - MER103 DNA DNA -124 42 2 4493 124 12 50 chr12 124096275 124097038 -19689417 - L1MA4A LINE L1 -1 6302 5569 1547 267 60 30 chr12 124098996 124099558 -19686897 - MLT1K LTR MaLR 0 588 10 380 292 131 12 chr12 124099957 124100125 -19686330 + MIR SINE MIR 2 189 -73 767 238 68 66 chr12 124100158 124100256 -19686199 - L2 LINE L2 -94 3219 3123 2610 58 0 0 chr12 124100256 124100564 -19685891 + AluY SINE Alu 1 308 -3 767 238 68 66 chr12 124100564 124100604 -19685851 - L2 LINE L2 -190 3123 3085 2433 96 0 13 chr12 124100604 124100918 -19685537 + AluSg SINE Alu 1 310 0 767 238 68 66 chr12 124100918 124101222 -19685233 - L2 LINE L2 -228 3085 2781 335 291 89 0 chr12 124102617 124102768 -19683687 + MIR SINE MIR 29 192 -67 474 177 0 0 chr12 124102887 124102966 -19683489 + L2 LINE L2 3234 3312 -1 212 327 0 0 chr12 124103052 124103107 -19683348 - MER5A DNA MER1_type -68 121 67 1989 146 23 3 chr12 124104061 124104363 -19682092 + AluSx SINE Alu 1 308 -4 487 188 210 17 chr12 124104596 124104772 -19681683 + L1ME3A LINE L1 5960 6169 -1 229 49 0 49 chr12 124104875 124104916 -19681539 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 671 236 15 44 chr12 124104953 124105156 -19681299 + L2 LINE L2 3106 3302 -11 221 239 30 45 chr12 124105280 124105347 -19681108 - L2 LINE L2 -56 3257 3192 771 178 0 23 chr12 124105442 124105571 -19680884 + FLAM_C SINE Alu 1 126 -7 926 219 100 59 chr12 124105782 124105952 -19680503 + MLT1B LTR MaLR 2 164 -226 1672 161 3 63 chr12 124105952 124106269 -19680186 + AluJb SINE Alu 1 298 -14 926 219 100 59 chr12 124106269 124106551 -19679904 + MLT1B LTR MaLR 164 390 0 210 209 0 0 chr12 124106792 124106835 -19679620 - L2 LINE L2 -1 3271 3229 437 135 9 144 chr12 124107278 124107344 -19679111 + MER5A DNA MER1_type 11 84 -105 1749 181 0 7 chr12 124107344 124107631 -19678824 + AluJb SINE Alu 1 285 -27 480 18 0 0 chr12 124107632 124107689 -19678766 + (GA)n Simple_repeat Simple_repeat 2 58 0 437 135 9 144 chr12 124107689 124107731 -19678724 + MER5A DNA MER1_type 83 106 -83 210 91 0 0 chr12 124107731 124107764 -19678691 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2244 92 4 0 chr12 124107766 124108047 -19678408 - AluSc SINE Alu -27 282 1 1106 228 9 9 chr12 124109381 124109605 -19676850 - MER58A DNA MER1_type 0 224 1 333 286 29 0 chr12 124109606 124109711 -19676744 - MIR3 SINE MIR -38 170 63 2518 78 0 0 chr12 124110413 124110719 -19675736 - AluY SINE Alu -5 306 1 342 265 35 31 chr12 124111787 124112084 -19674371 + MLT1J LTR MaLR 110 511 0 791 232 97 14 chr12 124112427 124112634 -19673821 - MER58A DNA MER1_type 0 224 1 587 242 13 13 chr12 124112705 124112858 -19673597 - MER103 DNA DNA -1 165 13 812 227 80 49 chr12 124113214 124113500 -19672955 - L1ME3A LINE L1 -8 6162 5868 371 158 0 13 chr12 124113506 124113582 -19672873 + CT-rich Low_complexity Low_complexity 2 76 0 1800 188 0 0 chr12 124113583 124113886 -19672569 - AluJb SINE Alu -9 303 1 400 260 68 55 chr12 124113958 124114104 -19672351 - L1ME3A LINE L1 -406 5764 5617 248 268 0 0 chr12 124114185 124114241 -19672214 - MER94 DNA DNA -77 57 2 807 224 29 113 chr12 124114243 124114709 -19671746 - L1ME3A LINE L1 -572 5598 5169 2236 23 11 0 chr12 124114722 124114986 -19671469 + L1PA4 LINE L1 5889 6155 0 403 103 0 17 chr12 124115169 124115227 -19671228 + MER3 DNA MER1_type 153 209 0 303 321 167 10 chr12 124115357 124115656 -19670799 + L2 LINE L2 2618 2963 -351 1693 165 20 44 chr12 124115722 124116126 -19670329 - MLT1C LTR MaLR 0 390 1 471 315 119 9 chr12 124116428 124116647 -19669808 + MIR SINE MIR 15 257 -5 272 241 57 133 chr12 124118264 124118422 -19668033 - MLT1H LTR MaLR 0 549 404 245 281 42 83 chr12 124118692 124118884 -19667571 - MLT1I LTR MaLR -200 209 69 577 325 99 19 chr12 124118949 124119548 -19666907 + L2 LINE L2 2430 3073 -199 1894 225 64 39 chr12 124119588 124120072 -19666383 + MLT1G1 LTR MaLR 99 594 -1 194 184 0 41 chr12 124120158 124120207 -19666248 + L2 LINE L2 3216 3262 -10 1262 219 104 32 chr12 124120415 124120819 -19665636 - MLT1C LTR MaLR -5 462 28 2325 81 0 13 chr12 124120833 124121158 -19665297 - AluSg SINE Alu 0 310 1 785 252 122 67 chr12 124121202 124121635 -19664820 - LTR33 LTR ERVL -64 457 1 342 276 26 14 chr12 124121733 124121890 -19664565 + MIR SINE MIR 37 192 -61 187 230 23 92 chr12 124121927 124122014 -19664441 + L2 LINE L2 3227 3307 -6 289 229 0 0 chr12 124122256 124122326 -19664129 - MLT1K LTR MaLR -31 557 488 248 244 77 103 chr12 124122615 124122771 -19663684 - MLT1K LTR MaLR -342 246 95 501 250 0 0 chr12 124123024 124123128 -19663327 - MER63 DNA MER1_type -277 783 680 386 303 148 54 chr12 124123328 124123701 -19662754 + L2 LINE L2 2824 3231 -41 284 320 50 20 chr12 124123747 124123847 -19662608 - L2 LINE L2 -12 3260 3158 498 330 79 5 chr12 124124436 124124651 -19661804 - MIR SINE MIR -29 233 3 256 200 25 50 chr12 124124747 124124827 -19661628 - L1MD2 LINE L1 -264 6095 6018 982 250 62 35 chr12 124125492 124125860 -19660595 + MLT1C LTR MaLR 53 430 -37 2725 117 35 30 chr12 124125956 124126382 -19660073 - MSTA LTR MaLR 0 428 1 379 233 43 17 chr12 124126705 124126821 -19659634 + MIR SINE MIR 110 228 -34 201 309 15 15 chr12 124126824 124126892 -19659563 - L2 LINE L2 0 3313 3246 2252 116 0 3 chr12 124126935 124127238 -19659217 - AluSx SINE Alu -10 302 1 404 287 81 104 chr12 124127656 124128050 -19658405 - L2 LINE L2 -1 3271 2887 307 313 25 25 chr12 124128155 124128318 -19658137 - MIR SINE MIR -10 252 90 203 382 10 0 chr12 124128557 124128659 -19657796 - MIR SINE MIR -88 174 72 190 315 46 39 chr12 124129013 124129143 -19657312 + MIR SINE MIR 84 214 -48 2446 99 0 0 chr12 124129594 124129907 -19656548 + AluSq SINE Alu 1 313 0 251 302 186 12 chr12 124129972 124130144 -19656311 - MIR SINE MIR -57 205 4 336 234 0 173 chr12 124131043 124131109 -19655346 - MER5B DNA MER1_type 0 178 102 2412 86 3 0 chr12 124131109 124131412 -19655043 + AluY SINE Alu 1 304 -7 336 234 0 173 chr12 124131412 124131523 -19654932 - MER5B DNA MER1_type -76 102 41 2083 227 103 15 chr12 124131523 124132065 -19654390 - MLT1E LTR MaLR -3 590 1 336 234 0 173 chr12 124132065 124132100 -19654355 - MER5B DNA MER1_type -137 41 2 182 122 61 41 chr12 124132169 124132218 -19654237 + MER5A DNA MER1_type 43 92 -97 * 288 294 35 0 chr12 124132193 124132278 -19654177 - MER5A DNA MER1_type -93 96 9 696 301 83 0 chr12 124132537 124132840 -19653615 + L2 LINE L2 2698 3031 -282 1225 272 100 4 chr12 124133148 124133770 -19652685 + L2 LINE L2 2611 3311 -2 309 299 22 6 chr12 124133865 124133977 -19652478 - MIR SINE MIR -68 140 30 631 232 164 0 chr12 124134504 124134681 -19651774 + MIR SINE MIR 47 252 -10 837 178 15 51 chr12 124134855 124135052 -19651403 - MER33 DNA MER1_type -134 190 1 214 250 167 0 chr12 124135615 124135687 -19650768 - MIR SINE MIR -10 252 169 260 240 83 42 chr12 124135687 124135783 -19650672 - Charlie8 DNA MER1_type -2233 184 85 5940 122 10 11 chr12 124135800 124136061 -19650394 - L1MC1 LINE L1 0 6333 6073 2203 135 43 0 chr12 124136061 124136410 -19650045 + THE1B LTR MaLR 1 364 0 5940 122 10 11 chr12 124136410 124137049 -19649406 - L1MC1 LINE L1 -260 6073 5434 262 281 49 0 chr12 124137169 124137251 -19649204 + Charlie7 DNA MER1_type 5 90 -2522 380 326 33 17 chr12 124137607 124137788 -19648667 + LTR16C LTR ERVL 308 491 0 3000 164 39 35 chr12 124138079 124138309 -19648146 - L1MC2 LINE L1 -13 6331 6103 1819 135 3 85 chr12 124138309 124138649 -19647806 - AluJo SINE Alu 0 312 1 3000 164 39 35 chr12 124138649 124139014 -19647441 - L1MC2 LINE L1 -241 6103 5734 1774 196 26 35 chr12 124139038 124139415 -19647040 - MLT1A2 LTR MaLR 0 374 1 315 329 36 18 chr12 124140113 124140280 -19646175 - MIR3 SINE MIR -6 202 33 261 182 36 0 chr12 124140440 124140495 -19645960 - MLT1K LTR MaLR -110 478 422 243 0 0 0 chr12 124141193 124141220 -19645235 + (A)n Simple_repeat Simple_repeat 1 27 0 2257 94 0 23 chr12 124141564 124141872 -19644583 + AluSx SINE Alu 9 309 -3 399 223 10 29 chr12 124141899 124142002 -19644453 - L1MC4a LINE L1 -1948 5860 5760 477 205 96 12 chr12 124142044 124142210 -19644245 + L2 LINE L2 2829 3008 -305 1671 121 123 134 chr12 124142217 124142446 -19644009 + L1MA4 LINE L1 5856 6079 -221 1742 120 6 123 chr12 124142446 124142788 -19643667 + AluSx SINE Alu 1 302 0 1671 121 123 134 chr12 124142788 124143005 -19643450 + L1MA4 LINE L1 6079 6297 -3 21 0 0 0 chr12 124143005 124143026 -19643429 + AT_rich Low_complexity Low_complexity 1 21 0 513 288 91 19 chr12 124143068 124143332 -19643123 + L2 LINE L2 3030 3312 -1 218 240 0 0 chr12 124143355 124143405 -19643050 - MIR SINE MIR -104 158 109 1736 152 35 17 chr12 124143479 124143769 -19642686 + AluJo SINE Alu 1 295 -17 262 333 167 4 chr12 124143805 124144033 -19642422 - L2 LINE L2 0 3272 3008 378 0 0 0 chr12 124144483 124144525 -19641930 + (TG)n Simple_repeat Simple_repeat 2 43 0 387 0 0 0 chr12 124144816 124144859 -19641596 + (TG)n Simple_repeat Simple_repeat 1 43 0 426 305 65 63 chr12 124144999 124145044 -19641411 - L2 LINE L2 -2 3270 3227 1700 218 32 44 chr12 124145044 124145517 -19640938 + MLT1C LTR MaLR 1 467 0 426 305 65 63 chr12 124145517 124145900 -19640555 - L2 LINE L2 -45 3227 2841 1888 163 28 36 chr12 124145911 124145972 -19640483 - MLT1A1 LTR MaLR -5 360 300 2228 119 0 0 chr12 124145972 124146267 -19640188 - AluSx SINE Alu -17 295 1 1888 163 28 36 chr12 124146267 124146568 -19639887 - MLT1A1 LTR MaLR -65 300 1 1666 109 23 138 chr12 124147229 124147577 -19638878 - AluYb8 SINE Alu 0 308 1 431 321 32 14 chr12 124147695 124147917 -19638538 - MIR SINE MIR -1 261 35 1822 171 104 56 chr12 124148363 124148557 -19637898 + MLT1D LTR MaLR 1 184 -321 1296 131 105 121 chr12 124148557 124148862 -19637593 + AluJb SINE Alu 1 300 -12 1822 171 104 56 chr12 124148862 124149148 -19637307 + MLT1D LTR MaLR 184 504 -1 614 283 87 38 chr12 124149528 124149793 -19636662 - L2 LINE L2 0 3272 2995 393 307 67 30 chr12 124149822 124150089 -19636366 - L2 LINE L2 -489 2825 2549 1611 240 38 22 chr12 124150123 124150568 -19635887 + MLT1C LTR MaLR 1 452 -15 525 260 68 17 chr12 124150593 124150828 -19635627 + L2 LINE L2 2569 2815 -499 320 292 54 0 chr12 124150867 124150997 -19635458 + L2 LINE L2 2924 3060 -253 242 229 0 0 chr12 124151032 124151080 -19635375 + MLT1D LTR MaLR 1 48 -457 398 301 30 30 chr12 124151082 124151248 -19635207 + L2 LINE L2 3112 3277 -36 1850 166 10 7 chr12 124151411 124151712 -19634743 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr12 124151739 124151761 -19634694 + AT_rich Low_complexity Low_complexity 1 22 0 394 320 89 20 chr12 124151761 124152040 -19634415 + L2 LINE L2 2770 3028 -285 369 0 0 0 chr12 124152040 124152081 -19634374 + (CA)n Simple_repeat Simple_repeat 2 42 0 394 320 89 20 chr12 124152081 124152291 -19634164 + L2 LINE L2 3028 3295 -18 374 231 87 133 chr12 124152363 124152475 -19633980 - MIR3 SINE MIR -4 204 103 2227 115 0 0 chr12 124152475 124152762 -19633693 + AluSx SINE Alu 1 287 -25 374 231 87 133 chr12 124152762 124152844 -19633611 - MIR3 SINE MIR -105 103 19 433 334 47 58 chr12 124153139 124153483 -19632972 + L2 LINE L2 2910 3249 -23 2091 111 4 14 chr12 124153633 124153940 -19632515 - AluSx SINE Alu 0 312 9 188 387 0 0 chr12 124153943 124154018 -19632437 + L2 LINE L2 2553 2627 -687 2135 168 16 18 chr12 124154026 124154412 -19632043 + MLT2D LTR ERVL 8 480 -40 222 171 0 0 chr12 124154412 124154453 -19632002 + (CA)n Simple_repeat Simple_repeat 2 42 0 276 262 25 16 chr12 124154457 124154579 -19631876 + (TA)n Simple_repeat Simple_repeat 2 124 0 260 208 0 0 chr12 124154580 124154628 -19631827 + MLT2C1 LTR ERVL 350 397 0 918 203 29 47 chr12 124154969 124155245 -19631210 - L1MC5 LINE L1 -46 7915 7645 1946 136 30 20 chr12 124155276 124155578 -19630877 - AluSq SINE Alu -8 305 1 373 235 111 13 chr12 124155579 124155651 -19630804 - L1MC5 LINE L1 -304 7657 7593 186 43 0 0 chr12 124155651 124155674 -19630781 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 373 235 111 13 chr12 124155674 124155754 -19630701 - L1MC5 LINE L1 -368 7593 7490 913 255 119 30 chr12 124155755 124156116 -19630339 - LTR16C LTR ERVL 0 491 99 2001 204 47 49 chr12 124156253 124156744 -19629711 - MLT1D LTR MaLR -4 501 12 738 166 40 7 chr12 124156756 124156907 -19629548 - L1MC5 LINE L1 -538 7423 7268 2284 113 6 10 chr12 124158154 124158465 -19627990 + AluSx SINE Alu 1 310 -2 229 242 16 0 chr12 124158525 124158587 -19627868 + (TA)n Simple_repeat Simple_repeat 1 63 0 401 185 259 0 chr12 124159454 124159562 -19626893 - LTR16C LTR ERVL -3 488 353 686 176 141 0 chr12 124159570 124159712 -19626743 + L1MB5 LINE L1 6002 6163 -11 918 107 186 17 chr12 124159722 124159899 -19626556 + L1PB2 LINE L1 5941 6147 -4 787 252 64 9 chr12 124159908 124160126 -19626329 - LTR16C LTR ERVL -139 352 123 203 98 0 49 chr12 124160225 124160266 -19626189 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3546 99 50 2 chr12 124160275 124160792 -19625663 - L1PA15 LINE L1 -2 6163 5622 1294 92 0 73 chr12 124160792 124160998 -19625457 + L1PA15 LINE L1 5417 5607 -558 4416 135 23 39 chr12 124161122 124161476 -19624979 - L1PB4 LINE L1 -9 6147 5789 609 14 0 0 chr12 124161476 124161546 -19624909 + (TA)n Simple_repeat Simple_repeat 2 71 0 4416 135 23 39 chr12 124161546 124161866 -19624589 - L1PB4 LINE L1 -367 5789 5485 2002 130 3 3 chr12 124161866 124162150 -19624305 + AluJo SINE Alu 1 284 -28 4416 135 23 39 chr12 124162150 124162265 -19624190 - L1PB4 LINE L1 -671 5485 5370 636 268 92 39 chr12 124162264 124162418 -19624037 - L1ME LINE L1 -506 5656 5512 * 2184 77 11 28 chr12 124162418 124162743 -19623712 - AluY SINE Alu 0 320 1 636 268 92 39 chr12 124162743 124163083 -19623372 - L1ME LINE L1 -650 5512 5132 376 318 24 12 chr12 124163105 124163275 -19623180 + L1ME4a LINE L1 5747 5918 -203 633 316 32 8 chr12 124163292 124163539 -19622916 + L1MC4a LINE L1 5476 5728 -2080 509 230 36 14 chr12 124163540 124163679 -19622776 + L1MC4a LINE L1 5771 5912 -1896 182 319 42 0 chr12 124163810 124163882 -19622573 - MIR SINE MIR -78 184 110 22 35 0 0 chr12 124164086 124164115 -19622340 + AT_rich Low_complexity Low_complexity 1 29 0 217 214 51 122 chr12 124164136 124164234 -19622221 - MIR SINE MIR -70 192 102 468 265 26 26 chr12 124164323 124164474 -19621981 + MIR SINE MIR 56 206 -56 646 272 162 36 chr12 124164485 124165024 -19621431 + L2 LINE L2 2690 3297 -16 187 247 148 37 chr12 124166196 124166277 -19620178 + L2 LINE L2 2964 3053 -219 2482 47 0 10 chr12 124166281 124166580 -19619875 - AluY SINE Alu -15 296 1 267 208 52 26 chr12 124166738 124166815 -19619640 + L2 LINE L2 3234 3312 -1 432 241 12 6 chr12 124166879 124167049 -19619406 + (TGAA)n Simple_repeat Simple_repeat 1 171 0 361 243 0 0 chr12 124167749 124167819 -19618636 - L2 LINE L2 0 3272 3203 547 120 109 0 chr12 124167973 124168065 -19618390 + L1MB4 LINE L1 6069 6170 -10 769 234 100 57 chr12 124168209 124168508 -19617947 + MLT1C LTR MaLR 6 317 -150 243 345 29 7 chr12 124168946 124169085 -19617370 + MIR SINE MIR 117 258 -4 906 241 27 5 chr12 124169112 124169336 -19617119 + MIR SINE MIR 33 261 -1 373 277 132 43 chr12 124170550 124170868 -19615587 - MLT1J LTR MaLR -212 299 4 207 139 0 0 chr12 124170920 124170956 -19615499 + (A)n Simple_repeat Simple_repeat 1 36 0 231 365 12 0 chr12 124171251 124171336 -19615119 - L2 LINE L2 -65 3207 3122 220 338 0 0 chr12 124171786 124171866 -19614589 + MIR SINE MIR 183 262 0 3479 30 0 7 chr12 124172732 124173139 -19613316 - L1PA4 LINE L1 -5 6150 5747 603 219 33 48 chr12 124173170 124173380 -19613075 - MIR SINE MIR -15 247 41 193 258 34 56 chr12 124173600 124173689 -19612766 - MIR SINE MIR -70 192 106 954 255 70 38 chr12 124173968 124174411 -19612044 - LTR16B LTR ERVL 0 464 8 2703 164 24 40 chr12 124174517 124175011 -19611444 + MER66B LTR ERV1 1 486 0 543 311 34 13 chr12 124175324 124175562 -19610893 + MIR SINE MIR 13 255 -7 186 294 59 29 chr12 124175591 124175693 -19610762 + MIR SINE MIR 151 255 -7 601 224 95 14 chr12 124175777 124175987 -19610468 - LTR33 LTR ERVL -3 518 292 530 227 37 6 chr12 124176070 124176233 -19610222 - LTR33 LTR ERVL -353 168 1 186 314 51 22 chr12 124176655 124176792 -19609663 - L2 LINE L2 -376 2938 2798 249 33 0 0 chr12 124176794 124176824 -19609631 + (GA)n Simple_repeat Simple_repeat 1 30 0 198 71 0 0 chr12 124177181 124177209 -19609246 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr12 124177494 124177516 -19608939 + AT_rich Low_complexity Low_complexity 1 22 0 425 306 103 13 chr12 124177546 124177721 -19608734 - MIR SINE MIR 0 262 60 1964 158 7 0 chr12 124177721 124178018 -19608437 + AluSx SINE Alu 1 299 -13 425 306 103 13 chr12 124178018 124178074 -19608381 - MIR SINE MIR -202 60 10 439 280 114 11 chr12 124179345 124179520 -19606935 - MIR SINE MIR -23 239 47 449 316 169 13 chr12 124179950 124180175 -19606280 - MIR SINE MIR 0 262 3 193 361 118 24 chr12 124180234 124180566 -19605889 - L2 LINE L2 -74 3198 2836 1504 197 32 93 chr12 124180571 124180796 -19605659 + L1ME2 LINE L1 5732 5916 -248 2097 141 10 0 chr12 124180796 124181101 -19605354 + AluSx SINE Alu 5 312 0 1504 197 32 93 chr12 124181101 124181336 -19605119 + L1ME2 LINE L1 5916 6164 0 200 200 0 25 chr12 124181336 124181376 -19605079 + GA-rich Low_complexity Low_complexity 2 40 0 219 279 44 0 chr12 124182062 124182130 -19604325 - MIR SINE MIR -146 116 46 300 267 0 23 chr12 124182569 124182655 -19603800 - L2 LINE L2 -4 3268 3185 276 99 0 0 chr12 124182702 124182754 -19603701 - L1ME LINE L1 -281 5840 5789 2510 36 7 3 chr12 124182754 124183055 -19603400 + L1PA7 LINE L1 5852 6153 -1 1046 89 64 50 chr12 124183072 124183274 -19603181 + L1MA8 LINE L1 6084 6288 -3 337 287 169 7 chr12 124183473 124183609 -19602846 + MIR SINE MIR 28 185 -77 1972 270 66 7 chr12 124183688 124184248 -19602207 - MLT1E LTR MaLR 0 593 1 493 276 31 0 chr12 124184607 124184734 -19601721 - L2 LINE L2 0 3313 3183 779 222 0 11 chr12 124184751 124184936 -19601519 + Zaphod DNA AcHobo 3359 3541 -490 338 280 0 28 chr12 124184950 124185057 -19601398 + L1ME2 LINE L1 6049 6152 -12 1661 261 16 22 chr12 124185107 124185612 -19600843 + Zaphod DNA AcHobo 3530 4031 0 324 278 87 8 chr12 124185654 124185780 -19600675 + MIR SINE MIR 16 151 -111 225 311 15 67 chr12 124186223 124186358 -19600097 + MER5B DNA MER1_type 25 152 -26 1675 178 3 23 chr12 124186406 124186709 -19599746 - AluJo SINE Alu -7 305 9 892 211 108 10 chr12 124186942 124187146 -19599309 - MER58A DNA MER1_type 0 224 1 388 312 94 0 chr12 124187177 124187347 -19599108 + MIR SINE MIR 77 262 0 491 244 106 50 chr12 124187354 124187383 -19599072 + MIR SINE MIR 36 62 -200 2087 162 43 6 chr12 124187383 124187735 -19598720 + MLT1A1 LTR MaLR 1 365 0 491 244 106 50 chr12 124187735 124187885 -19598570 + MIR SINE MIR 62 225 -37 25 31 0 0 chr12 124187930 124187962 -19598493 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 124188025 124188046 -19598409 + AT_rich Low_complexity Low_complexity 1 21 0 337 259 93 0 chr12 124188900 124189008 -19597447 - MIR3 SINE MIR -3 205 88 474 233 0 33 chr12 124189145 124189265 -19597190 + L2 LINE L2 3192 3307 -6 371 335 127 29 chr12 124189680 124189955 -19596500 + L2 LINE L2 2971 3272 0 221 222 0 11 chr12 124189990 124190080 -19596375 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 620 248 157 17 chr12 124190141 124190371 -19596084 + MIR SINE MIR 1 262 0 516 236 189 22 chr12 124190459 124190738 -19595717 + L1MC4 LINE L1 7380 7833 -209 397 230 130 0 chr12 124190980 124191080 -19595375 - MER117 DNA MER1_type -52 145 33 272 311 146 0 chr12 124191276 124191307 -19595148 + MIR SINE MIR 19 44 -218 252 0 0 0 chr12 124191307 124191335 -19595120 + (TG)n Simple_repeat Simple_repeat 2 29 0 272 311 146 0 chr12 124191335 124191467 -19594988 + MIR SINE MIR 44 205 -57 1198 234 136 30 chr12 124193249 124193720 -19592735 - LTR33 LTR ERVL 0 521 1 705 72 10 0 chr12 124193955 124194052 -19592403 - L1PA10 LINE L1 0 6168 6071 2081 119 26 7 chr12 124194180 124194482 -19591973 + AluSx SINE Alu 1 308 -4 2255 84 24 3 chr12 124194516 124194812 -19591643 + AluY SINE Alu 1 302 -9 538 243 7 21 chr12 124194815 124194955 -19591500 - Charlie8 DNA MER1_type -2206 211 74 416 281 30 30 chr12 124195103 124195267 -19591188 + MIR3 SINE MIR 36 199 -9 2422 88 0 0 chr12 124195494 124195788 -19590667 + AluSq SINE Alu 1 294 -19 2024 141 10 10 chr12 124195793 124196099 -19590356 + AluJb SINE Alu 1 306 -6 1357 135 71 15 chr12 124196355 124196622 -19589833 + L1MA8 LINE L1 6010 6291 0 1570 182 20 24 chr12 124197107 124197404 -19589051 + AluJo SINE Alu 1 296 -16 531 263 84 6 chr12 124197591 124197770 -19588685 + L2 LINE L2 2625 2817 -497 1096 211 5 9 chr12 124197772 124197995 -19588460 - MER58A DNA MER1_type 0 224 3 462 200 21 0 chr12 124198012 124198107 -19588348 + MER5A DNA MER1_type 9 105 -84 392 328 17 22 chr12 124198263 124198443 -19588012 + L2 LINE L2 3125 3303 -10 986 260 149 46 chr12 124198671 124199086 -19587369 + MLT1G1 LTR MaLR 81 538 -57 1788 203 36 5 chr12 124199364 124199817 -19586638 - L1MB5 LINE L1 -1 6170 5680 719 201 164 0 chr12 124199826 124199985 -19586470 + MER20 DNA MER1_type 1 185 -34 759 184 7 20 chr12 124199987 124200134 -19586321 + FRAM SINE Alu 2 146 -30 256 184 41 0 chr12 124200153 124200202 -19586253 + MER20 DNA MER1_type 169 219 0 816 238 125 28 chr12 124200857 124201434 -19585021 - L2 LINE L2 -3 3310 2680 408 205 13 0 chr12 124201450 124201528 -19584927 + MER96 DNA MER1_type? 1 79 -96 1189 261 10 54 chr12 124201633 124201720 -19584735 + LTR16A LTR ERVL 77 166 -284 1057 102 25 25 chr12 124201720 124201877 -19584578 - L1PA10 LINE L1 -2 6166 6010 2527 187 27 34 chr12 124201884 124202446 -19584009 - MER74A LTR ERVL 0 558 1 1189 261 10 54 chr12 124202446 124202741 -19583714 + LTR16A LTR ERVL 172 450 0 755 216 97 111 chr12 124202928 124203359 -19583096 - L1ME3A LINE L1 -7 6163 5739 541 249 0 86 chr12 124203360 124203557 -19582898 + L1ME LINE L1 5338 5517 -645 227 154 12 235 chr12 124203876 124204038 -19582417 - L1M3e LINE L1 -5635 1395 1270 307 153 245 0 chr12 124204875 124204973 -19581482 + L1ME4a LINE L1 5996 6117 -4 323 290 28 28 chr12 124205071 124205178 -19581277 - L2 LINE L2 -32 3240 3134 365 351 70 57 chr12 124205221 124205623 -19580832 + ERVL LTR ERVL 4850 5256 -508 573 264 141 37 chr12 124205836 124206105 -19580350 + LTR16A1 LTR ERVL 1 297 -160 2528 233 105 37 chr12 124206143 124206528 -19579927 - L1ME2 LINE L1 -7 6157 5800 1789 160 10 14 chr12 124206528 124206822 -19579633 - AluJb SINE Alu -19 293 1 2528 233 105 37 chr12 124206822 124207732 -19578723 - L1ME2 LINE L1 -364 5800 4783 477 226 83 30 chr12 124207747 124207880 -19578575 + LTR16A1 LTR ERVL 318 457 0 240 231 39 0 chr12 124207994 124208046 -19578409 - L2 LINE L2 -251 3062 3009 * 305 363 28 6 chr12 124208036 124208218 -19578237 - L2 LINE L2 -2501 813 628 736 143 0 0 chr12 124208261 124208373 -19578082 - FRAM SINE Alu -12 164 53 485 306 103 24 chr12 124208373 124208752 -19577703 - L2 LINE L2 -2783 531 123 346 197 30 0 chr12 124209421 124209487 -19576968 - MER5A DNA MER1_type 0 189 122 386 238 130 60 chr12 124209508 124209671 -19576784 - HAL1 LINE L1 -1091 1416 1266 2958 121 52 11 chr12 124209671 124210207 -19576248 - L1PB1 LINE L1 0 6151 5594 386 238 130 60 chr12 124210207 124210685 -19575770 - HAL1 LINE L1 -1241 1266 633 378 333 82 16 chr12 124210770 124210953 -19575502 - HAL1 LINE L1 -2041 466 272 929 257 28 65 chr12 124211012 124211335 -19575120 - MLT1E LTR MaLR 0 593 283 1183 139 62 12 chr12 124211365 124211609 -19574846 + L1MA5A LINE L1 6037 6292 -5 248 256 51 13 chr12 124211687 124211765 -19574690 - HAL1 LINE L1 -2377 130 50 1710 163 3 7 chr12 124212020 124212321 -19574134 - AluJb SINE Alu -12 300 1 394 113 146 4 chr12 124212795 124212883 -19573572 + L1PB1 LINE L1 5664 5780 -371 276 100 0 0 chr12 124212883 124212923 -19573532 + (TG)n Simple_repeat Simple_repeat 2 41 0 2474 79 13 63 chr12 124213096 124213292 -19573163 + L1PB1 LINE L1 5778 5982 -169 2091 123 7 3 chr12 124213292 124213600 -19572855 + AluSx SINE Alu 1 309 -3 2474 79 13 63 chr12 124213600 124213611 -19572844 + L1PB1 LINE L1 5982 5992 -159 1998 132 0 0 chr12 124213611 124213906 -19572549 + AluSx SINE Alu 1 295 -17 2474 79 13 63 chr12 124213906 124214091 -19572364 + L1PB1 LINE L1 5992 6151 0 2002 125 0 3 chr12 124214283 124214578 -19571877 + AluSx SINE Alu 1 294 -18 2271 77 3 3 chr12 124214580 124214919 -19571536 + AluSp SINE Alu 1 313 0 394 309 20 1 chr12 124215820 124215979 -19570476 - MIR SINE MIR -65 143 21 360 0 0 0 chr12 124216310 124216350 -19570105 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1413 155 10 72 chr12 124216350 124216640 -19569815 - AluSx SINE Alu -32 280 9 1909 124 10 10 chr12 124217137 124217436 -19569019 + AluSx SINE Alu 1 299 -13 2359 81 3 0 chr12 124217437 124217746 -19568709 + AluY SINE Alu 2 311 0 407 207 99 74 chr12 124217911 124218032 -19568423 - MER63 DNA MER1_type -311 751 2 671 256 92 18 chr12 124218043 124218270 -19568185 + MIR SINE MIR 19 262 0 189 255 0 64 chr12 124218449 124218496 -19567959 + MIR SINE MIR 59 102 -160 254 250 0 40 chr12 124218641 124218731 -19567724 + L2 LINE L2 3139 3308 -5 1194 189 115 57 chr12 124218910 124219259 -19567196 - MLT1A2 LTR MaLR -3 371 3 218 331 18 61 chr12 124219340 124219503 -19566952 + L2 LINE L2 2898 3053 -219 218 309 259 30 chr12 124219570 124219771 -19566684 + MIR SINE MIR 16 262 0 343 236 134 76 chr12 124220101 124220258 -19566197 + MIR SINE MIR 96 261 -1 2218 99 0 13 chr12 124220297 124220609 -19565846 + AluSx SINE Alu 1 308 -4 277 202 24 60 chr12 124220981 124221065 -19565390 - MLT1J LTR MaLR -302 209 129 915 206 34 10 chr12 124221073 124221277 -19565178 - L1 LINE L1 -1053 5093 4885 492 273 7 14 chr12 124221911 124222054 -19564401 - MIR SINE MIR -23 239 98 357 261 11 0 chr12 124222175 124222267 -19564188 + MIR SINE MIR 49 141 -67 441 280 0 0 chr12 124222322 124222422 -19564033 + MER5B DNA MER1_type 19 118 -60 918 152 51 0 chr12 124222431 124222589 -19563866 - AluJb SINE Alu -18 294 129 256 173 0 19 chr12 124222589 124222641 -19563814 + MER5B DNA MER1_type 128 178 0 902 166 139 27 chr12 124222725 124222920 -19563535 + L1MB7 LINE L1 5921 6130 -53 1963 118 3 3 chr12 124222920 124223209 -19563246 + AluSx SINE Alu 1 289 -23 902 166 139 27 chr12 124223209 124223269 -19563186 + L1MB7 LINE L1 6130 6182 -1 539 281 17 39 chr12 124223381 124223559 -19562896 + MIR SINE MIR 16 189 -73 21 0 0 0 chr12 124223697 124223718 -19562737 + GC_rich Low_complexity Low_complexity 1 21 0 303 293 20 0 chr12 124224209 124224308 -19562147 - L2 LINE L2 -310 2962 2862 371 319 95 0 chr12 124224472 124224588 -19561867 - L2 LINE L2 0 3272 3146 1700 121 63 32 chr12 124225289 124225604 -19560851 - THE1C LTR MaLR 0 375 51 336 121 17 0 chr12 124225611 124225669 -19560786 + MER5A DNA MER1_type 131 189 0 201 269 34 101 chr12 124225669 124225778 -19560677 - MER5A DNA MER1_type -88 101 1 463 261 0 0 chr12 124225945 124226033 -19560422 - MER81 DNA DNA -26 88 1 451 288 101 38 chr12 124226290 124226604 -19559851 + L1ME3A LINE L1 5596 5931 -231 2290 73 0 0 chr12 124226670 124226957 -19559498 + AluY SINE Alu 1 287 -24 213 233 0 0 chr12 124227310 124227353 -19559102 + L2 LINE L2 3181 3223 -49 484 256 16 31 chr12 124227385 124227514 -19558941 - MIR SINE MIR -57 151 25 1713 297 67 9 chr12 124227552 124228090 -19558365 + ERVL LTR ERVL 2619 3187 -2577 1690 263 44 40 chr12 124228099 124228249 -19558206 + ERVL LTR ERVL 4932 5080 -684 2094 108 169 37 chr12 124228249 124228409 -19558046 + MSTA LTR MaLR 1 138 -290 1971 108 0 39 chr12 124228409 124228715 -19557740 + AluSc SINE Alu 1 294 -15 2094 108 169 37 chr12 124228715 124228932 -19557523 + MSTA LTR MaLR 138 428 0 1690 263 44 40 chr12 124228932 124229374 -19557081 + ERVL LTR ERVL 5080 5526 -238 2027 207 180 24 chr12 124229618 124230197 -19556258 + LTR41 LTR ERVL 9 677 -96 272 232 15 26 chr12 124230290 124230487 -19555968 + CT-rich Low_complexity Low_complexity 1 194 0 594 0 0 0 chr12 124230936 124231002 -19555453 + (TG)n Simple_repeat Simple_repeat 2 67 0 447 206 11 39 chr12 124231011 124231191 -19555264 + GA-rich Low_complexity Low_complexity 6 180 0 1863 132 7 10 chr12 124231682 124231978 -19554477 - AluJo SINE Alu -17 295 1 268 189 38 0 chr12 124232197 124232250 -19554205 + MIR SINE MIR 96 150 -58 1008 283 4 12 chr12 124232282 124232533 -19553922 - MIR SINE MIR -5 257 9 202 255 21 0 chr12 124232767 124232814 -19553641 + L2 LINE L2 3201 3248 -24 216 250 307 0 chr12 124232932 124233020 -19553435 + L2 LINE L2 3138 3252 -20 2228 110 0 0 chr12 124233463 124233773 -19552682 + AluSg SINE Alu 1 310 0 372 309 73 66 chr12 124233982 124234299 -19552156 - L2 LINE L2 -6 3266 2948 1786 208 60 16 chr12 124234533 124234980 -19551475 + MLT1C LTR MaLR 1 467 0 2178 97 0 3 chr12 124235148 124235446 -19551009 + AluSx SINE Alu 1 297 -15 241 271 51 45 chr12 124235732 124235790 -19550665 - L1ME4a LINE L1 -4 6100 6044 632 158 71 39 chr12 124235790 124235917 -19550538 + FLAM_A SINE Alu 1 131 -2 241 271 51 45 chr12 124235917 124236035 -19550420 - L1ME4a LINE L1 -60 6044 5923 810 181 58 0 chr12 124236107 124236245 -19550210 + FRAM SINE Alu 1 146 -30 264 275 0 22 chr12 124236265 124236356 -19550099 + L1MC4 LINE L1 6614 6702 -1340 230 245 53 21 chr12 124236376 124236470 -19549985 - L1MC4 LINE L1 -1332 6710 6614 618 289 102 28 chr12 124236845 124237464 -19548991 - L1ME4a LINE L1 -373 5774 5105 546 276 89 78 chr12 124237477 124237497 -19548958 - L1ME4a LINE L1 -1071 5058 5040 1770 152 14 3 chr12 124237497 124237787 -19548668 + AluJb SINE Alu 1 293 -19 546 276 89 78 chr12 124237787 124238305 -19548150 - L1ME4a LINE L1 -1089 5040 4514 2239 115 0 0 chr12 124238312 124238617 -19547838 + AluSx SINE Alu 1 305 -7 456 167 11 11 chr12 124238793 124238883 -19547572 - MLT1J2 LTR MaLR -291 159 70 276 297 152 19 chr12 124238972 124239235 -19547220 - L1ME4a LINE L1 -1744 4385 4088 350 271 15 83 chr12 124239284 124239372 -19547083 + MIR SINE MIR 97 175 -87 2049 114 47 0 chr12 124239372 124239493 -19546962 + AluSx SINE Alu 1 115 -197 216 0 0 0 chr12 124239493 124239517 -19546938 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2049 114 47 0 chr12 124239517 124239693 -19546762 + AluSx SINE Alu 115 312 0 350 271 15 83 chr12 124239693 124239737 -19546718 + MIR SINE MIR 175 220 -42 244 275 18 18 chr12 124239790 124239899 -19546556 - L1ME4a LINE L1 -2135 3994 3886 926 111 0 0 chr12 124239917 124240043 -19546412 - FLAM_C SINE Alu -17 126 1 399 288 155 4 chr12 124240365 124240591 -19545864 - L1ME2 LINE L1 -279 5885 5626 731 245 98 27 chr12 124240601 124241015 -19545440 - MLT1H LTR MaLR 0 555 14 372 22 0 0 chr12 124241124 124241139 -19545316 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 372 22 0 0 chr12 124241139 124241184 -19545271 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2134 112 3 0 chr12 124241225 124241521 -19544934 - AluSx SINE Alu -15 297 1 656 234 84 7 chr12 124241573 124241727 -19544728 - MER58A DNA MER1_type -19 205 40 5493 175 49 38 chr12 124241728 124242234 -19544221 + L1MC1 LINE L1 4815 5314 -1019 2253 88 7 0 chr12 124242234 124242530 -19543925 - AluSx SINE Alu -14 298 1 5493 175 49 38 chr12 124242530 124243282 -19543173 + L1MC1 LINE L1 5314 6095 -238 2182 128 38 16 chr12 124243282 124243649 -19542806 - THE1C LTR MaLR 0 375 1 5493 175 49 38 chr12 124243649 124243891 -19542564 + L1MC1 LINE L1 6095 6333 0 267 245 19 0 chr12 124243898 124243951 -19542504 - MER58A DNA MER1_type -170 54 1 432 273 102 23 chr12 124244455 124244671 -19541784 - L1ME4a LINE L1 -3394 2735 2503 447 298 40 46 chr12 124244682 124245028 -19541427 - L1ME4a LINE L1 -3688 2441 2098 458 305 78 31 chr12 124245380 124246021 -19540434 - L1MEd LINE L1 -853 1637 1003 1222 140 31 13 chr12 124246074 124246303 -19540152 + L1MA4 LINE L1 6063 6295 -5 694 167 8 0 chr12 124246363 124246483 -19539972 + FLAM_A SINE Alu 18 138 -4 492 211 53 0 chr12 124246507 124246621 -19539834 + Charlie4 DNA MER1_type 1835 1954 -7 230 298 21 0 chr12 124246625 124246719 -19539736 - L1MEd LINE L1 -6013 106 11 228 330 18 28 chr12 124246994 124247103 -19539352 - L2 LINE L2 -24 3248 3141 198 224 20 61 chr12 124247232 124247281 -19539174 - MIR3 SINE MIR -52 156 110 * 686 258 31 0 chr12 124247278 124247441 -19539014 + MIR SINE MIR 93 260 -2 266 250 213 56 chr12 124247518 124247678 -19538777 + L2 LINE L2 3118 3302 -11 2025 130 8 90 chr12 124247977 124248126 -19538329 + MER47A DNA MER2_type 1 161 -2162 1706 159 14 0 chr12 124248126 124248409 -19538046 + AluJb SINE Alu 1 287 -25 2025 130 8 90 chr12 124248409 124248658 -19537797 + MER47A DNA MER2_type 161 366 0 198 0 0 0 chr12 124248706 124248728 -19537727 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 609 153 159 53 chr12 124248745 124248915 -19537540 - MER53 DNA DNA 0 189 2 387 41 0 0 chr12 124249286 124249335 -19537120 + (CA)n Simple_repeat Simple_repeat 1 49 0 2089 127 0 10 chr12 124249502 124249816 -19536639 - AluSx SINE Alu -1 311 1 405 237 105 18 chr12 124250027 124250195 -19536260 - MIR SINE MIR -46 216 27 263 252 57 73 chr12 124250656 124250779 -19535676 + MIR3 SINE MIR 42 162 -46 325 239 0 14 chr12 124250782 124250848 -19535607 - MER58A DNA MER1_type 0 224 160 852 144 0 0 chr12 124250848 124250973 -19535482 - MER58A DNA MER1_type 0 127 3 641 226 28 156 chr12 124251035 124251425 -19535030 - MER102b DNA MER1_type -1 340 1 2469 97 37 0 chr12 124251751 124252102 -19534353 + THE1B LTR MaLR 1 364 0 180 246 46 62 chr12 124252449 124252514 -19533941 + L3 LINE CR1 1286 1349 -228 495 175 0 0 chr12 124252650 124252730 -19533725 + L1MB2 LINE L1 5555 5634 -549 2261 187 54 2 chr12 124252732 124253193 -19533262 + L1MB2 LINE L1 5683 6167 -4 335 254 140 0 chr12 124253202 124253316 -19533139 - L1ME2 LINE L1 -34 6130 6001 234 322 0 0 chr12 124253593 124253652 -19532803 + (CA)n Simple_repeat Simple_repeat 1 59 0 2057 224 19 70 chr12 124253954 124254613 -19531842 + L1MD3 LINE L1 7279 7994 -1 312 304 92 37 chr12 124254662 124254879 -19531576 - L2 LINE L2 -88 3225 2997 625 282 209 38 chr12 124254903 124255768 -19530687 - L2 LINE L2 0 3313 2293 258 308 132 53 chr12 124255791 124256018 -19530437 - MIR SINE MIR 0 262 18 2179 120 56 8 chr12 124257407 124257765 -19528690 - THE1C LTR MaLR 0 375 1 201 339 46 15 chr12 124258101 124258231 -19528224 + L2 LINE L2 1790 1923 -1391 186 333 94 17 chr12 124258400 124258441 -19528014 + L2 LINE L2 2643 2679 -635 2012 126 13 3 chr12 124258441 124258750 -19527705 - AluSx SINE Alu 0 312 1 186 333 94 17 chr12 124258750 124258825 -19527630 + L2 LINE L2 2679 2768 -546 259 302 210 20 chr12 124258857 124259105 -19527350 + L2 LINE L2 2924 3218 -54 283 240 93 60 chr12 124259492 124259642 -19526813 + MER5A DNA MER1_type 4 158 -31 353 304 156 14 chr12 124260530 124260813 -19525642 + L1M4 LINE L1 2143 2465 -3681 725 194 51 31 chr12 124260964 124261160 -19525295 + Charlie5 DNA MER1_type 1 200 -2412 * 1191 167 19 7 chr12 124261158 124261428 -19525027 + Charlie5 DNA MER1_type 2352 2624 0 29 0 0 0 chr12 124265584 124265613 -19520842 + AT_rich Low_complexity Low_complexity 1 29 0 1151 190 54 3 chr12 124268150 124268276 -19518179 + MER33 DNA MER1_type 1 111 -2474 2204 94 23 10 chr12 124268276 124268584 -19517871 + AluSx SINE Alu 1 312 0 1151 190 54 3 chr12 124268584 124268772 -19517683 + MER33 DNA MER1_type 111 323 -1 1801 132 116 3 chr12 124268781 124269084 -19517371 - MER1B DNA MER1_type 0 337 1 2233 91 11 0 chr12 124269341 124269627 -19516828 + AluY SINE Alu 10 298 -13 1224 163 0 10 chr12 124270501 124270697 -19515758 + AluJb SINE Alu 110 303 -9 240 188 134 9 chr12 124270729 124270841 -19515614 - L1MC5 LINE L1 -201 7760 7635 661 249 68 90 chr12 124271090 124271592 -19514863 - L1MC4 LINE L1 -871 7022 6559 425 239 26 0 chr12 124271810 124271923 -19514532 - L1MC4 LINE L1 -1969 5839 5724 386 242 89 0 chr12 124272007 124272131 -19514324 - L1MC4 LINE L1 -2245 5563 5429 2331 111 3 0 chr12 124273480 124273786 -19512669 + AluSx SINE Alu 2 308 -4 517 237 64 45 chr12 124274191 124274347 -19512108 - MIR SINE MIR -97 165 7 1582 111 198 8 chr12 124276160 124276413 -19510042 - AluSg1 SINE Alu -8 301 1 533 229 72 7 chr12 124277747 124277900 -19508555 - MIR SINE MIR -10 252 90 314 170 0 0 chr12 124278162 124278215 -19508240 - MIR SINE MIR -7 255 203 1073 214 52 0 chr12 124280658 124280868 -19505587 + MER58A DNA MER1_type 1 221 -3 498 234 57 7 chr12 124282586 124282727 -19503728 + L1ME3A LINE L1 5393 5540 -622 1315 247 95 9 chr12 124282765 124283227 -19503228 + L1ME3A LINE L1 5657 6158 -12 1829 150 35 7 chr12 124283468 124283754 -19502701 + AluJb SINE Alu 1 294 -18 289 265 24 0 chr12 124283754 124283837 -19502618 - MER58 DNA MER1_type -2335 85 1 355 323 8 31 chr12 124283864 124283994 -19502461 - MIR3 SINE MIR -5 203 77 1575 139 24 3 chr12 124284016 124284304 -19502151 + L1MB7 LINE L1 5614 5907 -277 1706 150 17 13 chr12 124284304 124284604 -19501851 + AluJb SINE Alu 1 301 -11 375 187 27 0 chr12 124284606 124284681 -19501774 + FLAM_A SINE Alu 50 126 -7 1424 151 24 51 chr12 124284681 124284907 -19501548 + L1MB7 LINE L1 5894 6112 -72 2354 110 0 0 chr12 124284907 124285216 -19501239 - AluSx SINE Alu -3 309 1 1424 151 24 51 chr12 124285216 124285281 -19501174 + L1MB7 LINE L1 6112 6177 -7 469 264 55 0 chr12 124285533 124285643 -19500812 + L2 LINE L2 3193 3308 -5 1460 196 36 11 chr12 124286937 124287213 -19499242 - AluJo SINE Alu -29 283 1 23 33 0 0 chr12 124287847 124287877 -19498578 + AT_rich Low_complexity Low_complexity 1 30 0 237 269 64 13 chr12 124288114 124288192 -19498263 + L1ME4a LINE L1 5511 5592 -2216 464 248 206 0 chr12 124288302 124288520 -19497935 + L1ME4a LINE L1 5791 6053 -68 1852 169 34 3 chr12 124288525 124288875 -19497580 + MER46B DNA MER2_type 1 236 0 23 54 0 0 chr12 124289489 124289526 -19496929 + AT_rich Low_complexity Low_complexity 1 37 0 497 294 136 7 chr12 124294896 124295205 -19491250 + Charlie8 DNA MER1_type 101 449 -1968 210 264 0 19 chr12 124295510 124295563 -19490892 - L2 LINE L2 -4 3268 3217 699 319 140 53 chr12 124295804 124297011 -19489444 + L2 LINE L2 1836 3209 -63 1208 201 107 28 chr12 124299509 124299828 -19486627 - MER2 DNA MER2_type 0 344 1 29 47 0 0 chr12 124299895 124299938 -19486517 + AT_rich Low_complexity Low_complexity 1 43 0 543 164 110 27 chr12 124300592 124300738 -19485717 - MER3 DNA MER1_type -5 204 47 1920 146 0 34 chr12 124300754 124301076 -19485379 + AluJo SINE Alu 2 312 0 1339 181 4 30 chr12 124302001 124302022 -19484433 - MER47A DNA MER2_type -2059 264 244 1853 141 10 7 chr12 124302022 124302312 -19484143 - AluSx SINE Alu -21 291 1 1339 181 4 30 chr12 124302312 124302561 -19483894 - MER47A DNA MER2_type -2079 244 1 2465 72 0 3 chr12 124302673 124302979 -19483476 - AluSx SINE Alu -5 307 3 1861 169 0 0 chr12 124304013 124304309 -19482146 - AluSx SINE Alu -14 298 3 228 253 32 42 chr12 124305081 124305176 -19481279 + MIR3 SINE MIR 93 186 -22 204 286 99 4 chr12 124305286 124305376 -19481079 + MIR SINE MIR 79 148 -60 1620 158 88 7 chr12 124305720 124305993 -19480462 + AluSx SINE Alu 1 295 -17 271 333 98 11 chr12 124306504 124306678 -19479777 + MIR SINE MIR 65 253 -9 820 149 79 166 chr12 124307415 124307770 -19478685 + MER33 DNA MER1_type 1 324 0 2023 120 0 0 chr12 124307782 124308066 -19478389 - AluSx SINE Alu -8 304 21 24 0 0 0 chr12 124310291 124310315 -19476140 + AT_rich Low_complexity Low_complexity 1 24 0 223 269 149 0 chr12 124311833 124311900 -19474555 - MIR SINE MIR -107 101 25 420 273 102 23 chr12 124314334 124314550 -19471905 - L1MEd LINE L1 -3394 2735 2503 492 307 28 12 chr12 124314561 124314812 -19471643 - L1MEd LINE L1 -3688 2441 2187 447 306 78 30 chr12 124315264 124315900 -19470555 - L1MEd LINE L1 -853 1637 1003 1225 149 32 0 chr12 124315953 124316174 -19470281 + L1MA4 LINE L1 6063 6290 -10 656 165 8 8 chr12 124316246 124316367 -19470088 + FLAM_A SINE Alu 18 138 -4 479 211 53 0 chr12 124316391 124316505 -19469950 + Charlie4 DNA MER1_type 1835 1954 -7 216 330 18 28 chr12 124316878 124316987 -19469468 - L2 LINE L2 -24 3248 3141 195 224 20 61 chr12 124317114 124317163 -19469292 - MIR3 SINE MIR -52 156 110 * 627 232 0 0 chr12 124317160 124317285 -19469170 + MIR SINE MIR 93 217 -45 228 281 188 31 chr12 124317400 124317560 -19468895 + L2 LINE L2 3118 3302 -11 1992 133 8 90 chr12 124317859 124318008 -19468447 + MER47A DNA MER2_type 1 161 -2162 1796 159 14 0 chr12 124318008 124318291 -19468164 + AluJb SINE Alu 1 287 -25 1992 133 8 90 chr12 124318291 124318540 -19467915 + MER47A DNA MER2_type 161 366 0 198 0 0 0 chr12 124318588 124318610 -19467845 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 577 153 159 53 chr12 124318627 124318797 -19467658 - MER53 DNA DNA 0 189 2 387 41 0 0 chr12 124319168 124319217 -19467238 + (CA)n Simple_repeat Simple_repeat 1 49 0 1852 83 0 8 chr12 124319384 124319625 -19466830 - AluSg/x SINE Alu -1 309 71 26 50 0 0 chr12 124320126 124320166 -19466289 + AT_rich Low_complexity Low_complexity 1 40 0 1984 141 0 7 chr12 124321056 124321355 -19465100 + AluSg SINE Alu 1 297 -13 347 264 104 49 chr12 124322137 124322300 -19464155 + MIR SINE MIR 16 187 -75 180 0 0 0 chr12 124322920 124322940 -19463515 + (A)n Simple_repeat Simple_repeat 1 20 0 426 232 309 11 chr12 124323105 124323286 -19463169 + MIR SINE MIR 18 252 -10 2243 84 10 32 chr12 124326149 124326457 -19459998 - AluSg SINE Alu -9 301 1 1224 141 16 5 chr12 124328360 124328545 -19457910 + AluJo SINE Alu 1 187 -125 2242 95 39 9 chr12 124328545 124328881 -19457574 + Tigger4(Zombi) DNA MER2_type 2386 2731 0 1696 196 0 0 chr12 124332606 124332902 -19453553 - AluJb SINE Alu -16 296 1 251 370 109 16 chr12 124333091 124333283 -19453172 - MIR SINE MIR -42 220 11 213 300 0 0 chr12 124333294 124333344 -19453111 - L2 LINE L2 -13 3259 3210 24 0 0 0 chr12 124333688 124333712 -19452743 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 124333884 124333908 -19452547 + (A)n Simple_repeat Simple_repeat 1 24 0 562 125 0 0 chr12 124335127 124335207 -19451248 - FLAM SINE Alu -19 124 45 192 283 0 19 chr12 124337910 124337963 -19448492 + L2 LINE L2 3221 3272 0 1586 163 14 18 chr12 124338014 124338290 -19448165 + AluJo SINE Alu 15 289 -23 195 292 104 21 chr12 124339195 124339291 -19447164 - L2 LINE L2 -42 3230 3127 2507 207 37 34 chr12 124339421 124340074 -19446381 - L1MA6 LINE L1 -792 5354 4700 * 5424 136 38 2 chr12 124340070 124340991 -19445464 + L1MA6 LINE L1 5347 6300 0 233 269 75 0 chr12 124341421 124341488 -19444967 + MIR SINE MIR 70 141 -67 * 668 173 53 60 chr12 124341487 124341637 -19444818 - MER5A DNA MER1_type -40 149 1 546 246 138 56 chr12 124341738 124342043 -19444412 + L1MC4a LINE L1 5611 5940 -1868 1650 157 14 4 chr12 124342125 124342431 -19444024 + AluJb SINE Alu 1 309 0 322 302 0 19 chr12 124342719 124342825 -19443630 - L3 LINE CR1 -884 693 590 249 289 13 13 chr12 124342874 124342950 -19443505 - L3 LINE CR1 -1102 475 400 249 319 168 0 chr12 124343454 124343567 -19442888 - MIR3 SINE MIR -35 173 42 215 227 113 52 chr12 124344200 124344297 -19442158 - L2 LINE L2 -178 3135 3033 443 259 142 71 chr12 124344484 124344851 -19441604 + L1M4 LINE L1 2160 2552 -3594 243 0 0 0 chr12 124345005 124345032 -19441423 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1681 135 8 0 chr12 124345035 124345279 -19441176 - AluSx SINE Alu -31 281 36 498 218 77 56 chr12 124345287 124345521 -19440934 + L1M4 LINE L1 2785 3023 -3123 356 241 81 46 chr12 124345528 124345702 -19440753 + L1M4 LINE L1 3080 3259 -2887 307 297 88 48 chr12 124346004 124346345 -19440110 + L1M4 LINE L1 3830 4156 -1990 2077 109 3 41 chr12 124346345 124346665 -19439790 + AluY SINE Alu 1 308 -3 243 0 0 0 chr12 124346665 124346692 -19439763 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chr12 124346691 124346715 -19439740 + (CGGGA)n Simple_repeat Simple_repeat 2 25 0 307 297 88 48 chr12 124346692 124346726 -19439729 + L1M4 LINE L1 4155 4197 -1949 756 0 0 0 chr12 124346726 124346810 -19439645 + (GAAAA)n Simple_repeat Simple_repeat 5 88 0 423 56 0 0 chr12 124346800 124346854 -19439601 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 * 687 267 122 41 chr12 124346856 124347489 -19438966 + L1M4 LINE L1 4152 4835 -1311 447 272 199 28 chr12 124347491 124347809 -19438646 + L2 LINE L2 2788 3153 -160 358 262 12 42 chr12 124347895 124348063 -19438392 + GA-rich Low_complexity Low_complexity 1 163 0 22 70 0 0 chr12 124348405 124348448 -19438007 + AT_rich Low_complexity Low_complexity 1 43 0 195 42 0 0 chr12 124348795 124348819 -19437636 + (TG)n Simple_repeat Simple_repeat 2 25 0 211 375 52 10 chr12 124349253 124349349 -19437106 + L2 LINE L2 3158 3257 -15 2056 86 11 4 chr12 124349784 124350083 -19436372 + AluSx SINE Alu 13 313 0 346 254 82 36 chr12 124350092 124350202 -19436253 - L2 LINE L2 -4 3268 3154 1672 156 51 0 chr12 124350650 124350926 -19435529 - AluJb SINE Alu -22 290 1 518 279 84 0 chr12 124351023 124351213 -19435242 + L2 LINE L2 3108 3313 0 2167 118 32 6 chr12 124352245 124352593 -19433862 + MER46B DNA MER2_type 5 236 0 24 0 0 0 chr12 124353222 124353246 -19433209 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 124353794 124353821 -19432634 + (A)n Simple_repeat Simple_repeat 1 27 0 553 362 65 8 chr12 124354610 124354856 -19431599 - L2 LINE L2 -544 2770 2511 369 269 31 38 chr12 124354856 124355016 -19431439 - L2 LINE L2 -996 2318 2160 387 187 0 44 chr12 124355702 124355793 -19430662 + L1ME LINE L1 5725 5811 -359 1414 181 99 42 chr12 124356140 124356494 -19429961 + THE1C LTR MaLR 2 375 0 441 320 68 59 chr12 124356509 124356612 -19429843 + L3 LINE CR1 1032 1133 -444 2025 99 33 0 chr12 124356612 124356917 -19429538 + AluY SINE Alu 1 314 0 441 320 68 59 chr12 124356917 124357031 -19429424 + L3 LINE CR1 1133 1252 -325 21 0 0 0 chr12 124357138 124357159 -19429296 + AT_rich Low_complexity Low_complexity 1 21 0 266 305 216 5 chr12 124357250 124357440 -19429015 + L3 LINE CR1 1347 1576 -1 22 70 0 0 chr12 124360927 124360970 -19425485 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr12 124361589 124361610 -19424845 + AT_rich Low_complexity Low_complexity 1 21 0 2420 88 0 0 chr12 124361741 124362047 -19424408 + AluY SINE Alu 1 306 -5 1457 199 10 19 chr12 124362117 124362428 -19424027 + AluJo SINE Alu 1 308 -4 2059 122 20 7 chr12 124365709 124366013 -19420442 + AluSx SINE Alu 1 308 -4 460 69 0 0 chr12 124366304 124366362 -19420093 + Alu SINE Alu 228 285 -25 1775 155 36 39 chr12 124366575 124366911 -19419544 - MER46B DNA MER2_type 0 236 27 276 30 0 0 chr12 124367125 124367158 -19419297 + (CA)n Simple_repeat Simple_repeat 2 34 0 220 330 36 127 chr12 124368285 124368561 -19417894 - L2 LINE L2 -76 3196 2946 651 237 69 17 chr12 124368578 124368751 -19417704 - MIR SINE MIR -18 244 63 339 292 96 11 chr12 124368889 124369067 -19417388 - MIR SINE MIR -66 196 4 327 25 0 0 chr12 124369248 124369288 -19417167 + (CA)n Simple_repeat Simple_repeat 2 41 0 1706 250 119 17 chr12 124369734 124370382 -19416073 + L1ME3A LINE L1 5457 6170 0 2115 105 13 10 chr12 124370668 124370973 -19415482 + AluSx SINE Alu 1 306 -6 1142 178 208 8 chr12 124371366 124371602 -19414853 - AluJb SINE Alu -19 283 1 1851 158 28 0 chr12 124374139 124374430 -19412025 - AluJb SINE Alu -13 299 1 2120 118 0 3 chr12 124374488 124374784 -19411671 - AluSq SINE Alu -14 299 5 33 66 0 0 chr12 124374824 124374885 -19411570 + AT_rich Low_complexity Low_complexity 1 61 0 1980 124 19 10 chr12 124375366 124375673 -19410782 + AluSx SINE Alu 1 310 -2 211 289 161 13 chr12 124376484 124376633 -19409822 + MIR SINE MIR 48 218 -44 1903 96 0 4 chr12 124376939 124377199 -19409256 + AluY SINE Alu 51 309 -2 1557 179 0 4 chr12 124377319 124377576 -19408879 - AluSx SINE Alu -16 296 41 1877 101 0 16 chr12 124377651 124377909 -19408546 - AluSc SINE Alu -13 296 43 1391 169 0 28 chr12 124378445 124378694 -19407761 + AluJo SINE Alu 56 297 -15 1704 158 17 48 chr12 124378968 124379063 -19407392 + MER2 DNA MER2_type 2 98 -246 1596 177 27 24 chr12 124379063 124379357 -19407098 + AluJb SINE Alu 1 295 -17 1704 158 17 48 chr12 124379357 124379615 -19406840 + MER2 DNA MER2_type 98 344 0 432 286 18 27 chr12 124379991 124380103 -19406352 + L2 LINE L2 3190 3300 -13 424 252 68 0 chr12 124380118 124380221 -19406234 - Tigger3(Golem) DNA MER2_type -1 3028 2919 27 0 0 0 chr12 124380221 124380248 -19406207 + AT_rich Low_complexity Low_complexity 1 27 0 345 239 14 0 chr12 124380349 124380420 -19406035 - Tigger3(Golem) DNA MER2_type -2949 80 9 195 184 0 0 chr12 124381265 124381303 -19405152 + (CA)n Simple_repeat Simple_repeat 1 38 0 328 45 0 0 chr12 124381707 124381751 -19404704 + MADE1 DNA Mariner 37 80 0 313 315 123 41 chr12 124382826 124383045 -19403410 + MIR SINE MIR 12 248 -14 1888 158 28 3 chr12 124384835 124385158 -19401297 + MER46B DNA MER2_type 31 236 0 21 0 0 0 chr12 124385175 124385196 -19401259 + AT_rich Low_complexity Low_complexity 1 21 0 589 265 35 18 chr12 124385358 124385528 -19400927 + MIR SINE MIR 23 195 -67 605 203 188 30 chr12 124385550 124385747 -19400708 - MIR SINE MIR -28 234 7 24 32 0 0 chr12 124386529 124386560 -19399895 + AT_rich Low_complexity Low_complexity 1 31 0 1085 115 0 0 chr12 124386582 124386744 -19399711 - AluSp SINE Alu 0 306 145 215 278 0 0 chr12 124387427 124387481 -19398974 - MIR3 SINE MIR -29 179 126 1758 87 0 9 chr12 124387612 124387843 -19398612 - AluSg/x SINE Alu -11 301 73 26 50 0 0 chr12 124388344 124388384 -19398071 + AT_rich Low_complexity Low_complexity 1 40 0 2005 137 0 7 chr12 124389274 124389573 -19396882 + AluSg SINE Alu 1 297 -13 347 264 104 49 chr12 124390355 124390518 -19395937 + MIR SINE MIR 16 187 -75 1232 209 0 4 chr12 124390964 124391198 -19395257 + AluJo SINE Alu 78 310 -2 2045 103 41 3 chr12 124392504 124392794 -19393661 + AluSx SINE Alu 1 301 -11 223 312 129 0 chr12 124393060 124393153 -19393302 + MIR SINE MIR 11 115 -147 830 242 18 18 chr12 124393176 124393399 -19393056 + MER58A DNA MER1_type 1 223 -1 1063 144 132 116 chr12 124393550 124393847 -19392608 + Charlie1b DNA MER1_type 67 358 -2403 189 0 0 0 chr12 124393847 124393868 -19392587 + (TGG)n Simple_repeat Simple_repeat 1 21 0 1586 172 28 31 chr12 124393869 124394159 -19392296 - AluJo SINE Alu -23 289 1 1063 144 132 116 chr12 124394159 124394189 -19392266 + Charlie1b DNA MER1_type 358 386 -2375 1639 123 33 8 chr12 124394189 124394433 -19392022 - AluJb SINE Alu -25 287 38 1063 144 132 116 chr12 124394433 124394540 -19391915 + Charlie1b DNA MER1_type 386 511 -12 1493 115 60 0 chr12 124394556 124394773 -19391682 - MER30B DNA MER1_type 0 230 1 865 273 34 61 chr12 124394995 124395098 -19391357 + LTR37B LTR ERV1 6 110 -358 1792 241 117 8 chr12 124395098 124395620 -19390835 + MER119 DNA MER1_type 5 583 0 865 273 34 61 chr12 124395620 124395988 -19390467 + LTR37B LTR ERV1 110 464 -4 1647 169 62 0 chr12 124396235 124396507 -19389948 + AluJb SINE Alu 1 289 -23 643 160 0 0 chr12 124397204 124397310 -19389145 + U6 snRNA snRNA 2 107 0 2027 132 23 0 chr12 124397758 124398061 -19388394 + AluSx SINE Alu 1 310 -2 1113 112 65 0 chr12 124399257 124399426 -19387029 + AluSg/x SINE Alu 122 301 -11 333 180 139 8 chr12 124400329 124400384 -19386071 + HAL1 LINE L1 2228 2274 -233 282 29 0 0 chr12 124400384 124400419 -19386036 + (CA)n Simple_repeat Simple_repeat 1 35 0 333 180 139 8 chr12 124400419 124400485 -19385970 + HAL1 LINE L1 2274 2365 -142 2261 101 7 0 chr12 124400910 124401207 -19385248 - AluSp SINE Alu -11 302 4 1149 219 68 149 chr12 124402570 124403038 -19383417 + L1ME LINE L1 6 510 -5560 1141 177 43 0 chr12 124403038 124403247 -19383208 + MER20 DNA MER1_type 1 218 -1 1149 219 68 149 chr12 124403247 124403360 -19383095 + L1ME LINE L1 510 631 -5439 231 36 0 0 chr12 124403360 124403388 -19383067 + (GGGGA)n Simple_repeat Simple_repeat 4 31 0 1149 219 68 149 chr12 124403388 124403780 -19382675 + L1ME LINE L1 631 901 -5169 690 185 0 59 chr12 124403850 124403985 -19382470 - FLAM_A SINE Alu -6 127 1 2147 113 16 10 chr12 124405471 124405781 -19380674 + AluSx SINE Alu 1 312 0 518 272 154 25 chr12 124406253 124406577 -19379878 + L2 LINE L2 1772 2137 -1177 233 299 139 7 chr12 124408550 124408687 -19377768 - MIR SINE MIR -59 203 49 1715 160 29 7 chr12 124409515 124409796 -19376659 + AluJb SINE Alu 1 287 -25 1967 158 0 3 chr12 124410700 124411010 -19375445 + AluJb SINE Alu 1 309 -3 24 53 0 0 chr12 124411125 124411163 -19375292 + AT_rich Low_complexity Low_complexity 1 38 0 711 198 198 71 chr12 124411460 124411784 -19374671 - HsTC2 DNA Tc2 -51 1847 1566 2053 138 14 0 chr12 124411784 124412074 -19374381 - AluSx SINE Alu -18 294 1 711 198 198 71 chr12 124412074 124412103 -19374352 - HsTC2 DNA Tc2 -332 1566 1273 22 0 0 0 chr12 124412103 124412125 -19374330 + AT_rich Low_complexity Low_complexity 1 22 0 1600 232 62 41 chr12 124412126 124412591 -19373864 - HsTC2 DNA Tc2 -1387 511 37 2378 86 3 3 chr12 124412592 124412905 -19373550 + AluSq SINE Alu 1 313 0 333 328 121 17 chr12 124413687 124413861 -19372594 - MIR SINE MIR -67 195 4 2183 118 3 3 chr12 124414945 124415251 -19371204 + AluSx SINE Alu 1 306 -6 1620 181 16 26 chr12 124415257 124415567 -19370888 + AluJb SINE Alu 1 307 -5 207 389 47 40 chr12 124415834 124415983 -19370472 + L2 LINE L2 3111 3260 -12 2375 86 13 0 chr12 124417339 124417643 -19368812 - AluSg SINE Alu -1 309 2 1375 153 6 107 chr12 124417886 124418213 -19368242 - AluJo SINE Alu -6 296 3 2254 113 7 0 chr12 124418628 124418937 -19367518 - AluSq SINE Alu -2 311 1 877 273 34 27 chr12 124420526 124420819 -19365636 + MLT1I LTR MaLR 111 405 -4 560 339 71 24 chr12 124420975 124421191 -19365264 + L3 LINE CR1 1254 1489 -88 2213 117 0 3 chr12 124421191 124421500 -19364955 + AluSx SINE Alu 1 308 -4 560 339 71 24 chr12 124421500 124421578 -19364877 + L3 LINE CR1 1489 1562 -15 226 279 39 19 chr12 124421610 124421780 -19364675 - MIR SINE MIR 0 262 37 2292 82 0 0 chr12 124422438 124422750 -19363705 + AluSg SINE Alu 1 312 0 265 182 0 0 chr12 124422914 124422958 -19363497 + MER30B DNA MER1_type 2 45 -145 192 77 0 0 chr12 124423658 124423684 -19362771 + (TC)n Simple_repeat Simple_repeat 1 26 0 2414 74 0 7 chr12 124423939 124424236 -19362219 + AluSg1 SINE Alu 1 295 -14 297 319 53 9 chr12 124424378 124424491 -19361964 + L2 LINE L2 2921 3038 -275 2038 261 66 27 chr12 124424514 124424945 -19361510 - MLT1G LTR MaLR 0 590 129 2026 121 0 0 chr12 124424945 124425252 -19361203 - AluY SINE Alu 0 307 1 2038 261 66 27 chr12 124425252 124425383 -19361072 - MLT1G LTR MaLR -461 129 5 302 292 195 9 chr12 124425527 124425640 -19360815 + L2 LINE L2 3180 3313 0 358 336 29 2 chr12 124426112 124426265 -19360190 - MIR SINE MIR -62 146 42 198 227 0 0 chr12 124426580 124426624 -19359831 + MIR SINE MIR 219 262 0 2568 59 3 0 chr12 124426644 124426947 -19359508 - AluSq SINE Alu -9 304 1 27 0 0 0 chr12 124428355 124428382 -19358073 + AT_rich Low_complexity Low_complexity 1 27 0 1911 114 89 0 chr12 124428504 124428784 -19357671 + AluSq SINE Alu 1 305 -8 631 286 13 56 chr12 124428939 124429170 -19357285 + L2 LINE L2 3077 3297 -16 29 28 0 0 chr12 124430264 124430300 -19356155 + AT_rich Low_complexity Low_complexity 1 36 0 1219 279 108 18 chr12 124430391 124431117 -19355338 + L2 LINE L2 2519 3300 -13 2090 130 0 3 chr12 124431197 124431504 -19354951 + AluSx SINE Alu 1 306 -6 495 134 160 59 chr12 124432019 124432138 -19354317 + FLAM_C SINE Alu 2 132 -1 225 238 50 38 chr12 124433440 124433520 -19352935 + MIR SINE MIR 175 255 -7 187 257 0 57 chr12 124434162 124434232 -19352223 + MIR3 SINE MIR 143 208 0 1529 171 58 27 chr12 124434286 124434451 -19352004 - AluJo SINE Alu -11 301 122 405 0 0 0 chr12 124434451 124434496 -19351959 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1529 171 58 27 chr12 124434496 124434622 -19351833 - AluJo SINE Alu -190 122 1 1355 98 12 82 chr12 124434798 124434908 -19351547 - MER30 DNA MER1_type 0 230 145 2333 96 3 0 chr12 124434908 124435211 -19351244 - AluSc SINE Alu -5 304 1 1355 98 12 82 chr12 124435211 124435344 -19351111 - MER30 DNA MER1_type -85 145 4 569 162 0 10 chr12 124435374 124435473 -19350982 + AluJ/FLAM SINE Alu 1 98 -214 1382 178 0 0 chr12 124436017 124436242 -19350213 - AluJb SINE Alu -2 310 86 3120 216 112 46 chr12 124437106 124437314 -19349141 + L1MC4 LINE L1 6871 7064 -978 306 50 0 0 chr12 124437314 124437354 -19349101 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3120 216 112 46 chr12 124437354 124438237 -19348218 + L1MC4 LINE L1 7064 8034 -8 207 100 0 0 chr12 124438472 124438502 -19347953 + (A)n Simple_repeat Simple_repeat 1 30 0 1367 232 60 17 chr12 124439845 124440259 -19346196 - HsTC2b DNA Tc2 0 920 313 1566 168 0 68 chr12 124440311 124440633 -19345822 + AluJo SINE Alu 1 300 -12 649 102 21 59 chr12 124440640 124440827 -19345628 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 651 270 93 35 chr12 124441136 124441425 -19345030 - HsTC2b DNA Tc2 -572 343 38 1158 207 190 5 chr12 124441491 124441907 -19344548 + L1ME1 LINE L1 4015 4507 -1639 1859 224 81 40 chr12 124441928 124442954 -19343501 + L1ME1 LINE L1 4551 5622 -544 3789 175 54 62 chr12 124442985 124443843 -19342612 + MER21B LTR ERV1 2 852 -11 1393 217 69 12 chr12 124443942 124444348 -19342107 + L1ME1 LINE L1 5672 6100 -66 1805 162 0 10 chr12 124444767 124445063 -19341392 - AluJb SINE Alu -17 295 3 29 60 0 0 chr12 124445065 124445115 -19341340 + AT_rich Low_complexity Low_complexity 1 50 0 23 68 0 0 chr12 124445284 124445328 -19341127 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr12 124445861 124445896 -19340559 + AT_rich Low_complexity Low_complexity 1 35 0 256 297 201 44 chr12 124446128 124446377 -19340078 + LTR67 LTR ERVL 109 396 -161 1036 194 4 23 chr12 124446522 124446795 -19339660 + AluJo SINE Alu 6 312 0 216 0 0 0 chr12 124446795 124446819 -19339636 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 267 0 99 chr12 124446821 124446922 -19339533 - MIR SINE MIR -161 101 11 220 317 3 14 chr12 124447115 124447188 -19339267 - MIR SINE MIR -131 77 3 393 22 0 0 chr12 124447389 124447435 -19339020 + (TC)n Simple_repeat Simple_repeat 1 46 0 * 396 0 0 0 chr12 124447434 124447478 -19338977 + (CA)n Simple_repeat Simple_repeat 1 44 0 557 68 0 11 chr12 124451062 124451150 -19335305 + (GA)n Simple_repeat Simple_repeat 2 88 0 468 259 9 0 chr12 124452146 124452258 -19334197 + FLAM_A SINE Alu 1 113 -29 189 0 0 0 chr12 124452258 124452279 -19334176 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 23 0 0 0 chr12 124452753 124452776 -19333679 + AT_rich Low_complexity Low_complexity 1 23 0 531 277 148 40 chr12 124454662 124454987 -19331468 + L2 LINE L2 2617 2976 -338 453 82 0 0 chr12 124456107 124456168 -19330287 + Alu SINE Alu 1 61 -257 2394 96 0 0 chr12 124456582 124456894 -19329561 + AluSx SINE Alu 1 312 0 475 122 12 37 chr12 124458036 124458118 -19328337 - MER20 DNA MER1_type -139 80 1 1740 156 0 14 chr12 124458669 124458952 -19327503 + AluSx SINE Alu 18 296 -16 2090 112 10 10 chr12 124458953 124459257 -19327198 + AluSq SINE Alu 2 305 -8 223 214 0 36 chr12 124459574 124459594 -19326861 + GA-rich Low_complexity Low_complexity 2 21 -34 2090 111 31 0 chr12 124459594 124459882 -19326573 + AluSx SINE Alu 1 297 -15 223 214 0 36 chr12 124459882 124459917 -19326538 + GA-rich Low_complexity Low_complexity 21 55 0 1455 267 79 24 chr12 124460524 124461079 -19325376 + MLT1G3 LTR MaLR 3 513 -17 1257 99 0 28 chr12 124462112 124462294 -19324161 + AluSg/x SINE Alu 129 305 -7 23 0 0 0 chr12 124462555 124462578 -19323877 + AT_rich Low_complexity Low_complexity 1 23 0 261 174 0 0 chr12 124462812 124462881 -19323574 + (TA)n Simple_repeat Simple_repeat 2 70 0 406 352 61 14 chr12 124464988 124465201 -19321254 + MIR SINE MIR 20 242 -20 182 344 16 16 chr12 124466315 124466379 -19320076 + L2 LINE L2 3117 3180 -92 256 315 158 0 chr12 124467249 124467395 -19319060 + MIR SINE MIR 94 262 0 588 272 84 40 chr12 124468274 124468524 -19317931 - MIR SINE MIR 0 262 2 2051 139 0 3 chr12 124469052 124469346 -19317109 - AluSx SINE Alu -19 293 1 1868 160 7 3 chr12 124469361 124469648 -19316807 + AluJo SINE Alu 1 288 -24 189 0 0 0 chr12 124470622 124470643 -19315812 + (A)n Simple_repeat Simple_repeat 1 21 0 383 330 38 53 chr12 124471096 124471305 -19315150 + MLT1J LTR MaLR 298 503 -8 334 194 60 0 chr12 124471548 124471615 -19314840 + L2 LINE L2 3158 3228 -44 391 248 128 8 chr12 124473002 124473119 -19313336 - MIR SINE MIR -62 200 70 24 32 0 0 chr12 124474287 124474318 -19312137 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 61 17 chr12 124474676 124474791 -19311664 + MIR3 SINE MIR 41 160 -48 22 0 0 0 chr12 124474797 124474819 -19311636 + AT_rich Low_complexity Low_complexity 1 22 0 1229 146 104 71 chr12 124474819 124475087 -19311368 - AluJo SINE Alu -35 277 1 1531 195 151 0 chr12 124475145 124475489 -19310966 - MSTD LTR MaLR 0 396 1 340 310 82 73 chr12 124475727 124475959 -19310496 - L2 LINE L2 -7 3265 3032 1047 187 173 27 chr12 124476270 124476639 -19309816 + LTR54B LTR ERV1 76 498 0 22 35 0 0 chr12 124477108 124477137 -19309318 + AT_rich Low_complexity Low_complexity 1 29 0 570 207 9 43 chr12 124477137 124477253 -19309202 - FLAM_A SINE Alu -17 116 5 24 32 0 0 chr12 124477519 124477550 -19308905 + AT_rich Low_complexity Low_complexity 1 31 0 2244 90 0 0 chr12 124477582 124477859 -19308596 - AluSg SINE Alu -10 300 24 243 0 0 0 chr12 124479479 124479506 -19306949 + (T)n Simple_repeat Simple_repeat 1 27 0 2185 103 3 3 chr12 124479548 124479849 -19306606 - AluY SINE Alu -10 301 1 308 294 87 81 chr12 124479962 124480291 -19306164 + L2 LINE L2 2722 3046 -267 710 153 0 0 chr12 124480299 124480410 -19306045 + AluJb SINE Alu 1 111 -201 1325 96 43 0 chr12 124480412 124480600 -19305855 + MLT2A2 LTR ERVL 1 196 -257 240 57 0 29 chr12 124480598 124480633 -19305822 + MLT2A1 LTR ERVL 411 444 0 * 1064 139 36 0 chr12 124480634 124480799 -19305656 + AluSg/x SINE Alu 108 278 -32 21 0 0 0 chr12 124480799 124480820 -19305635 + AT_rich Low_complexity Low_complexity 1 21 0 367 267 68 48 chr12 124480916 124481062 -19305393 + L2 LINE L2 3165 3313 0 831 197 10 21 chr12 124482972 124483165 -19303290 - Charlie1a DNA MER1_type -1 1454 1264 4571 199 87 40 chr12 124483622 124483944 -19302511 - Charlie1a DNA MER1_type -1513 1248 943 1502 200 3 29 chr12 124483944 124484254 -19302201 + AluJo SINE Alu 1 302 -10 4571 199 87 40 chr12 124484254 124484815 -19301640 - Charlie1a DNA MER1_type -1818 943 292 1950 139 23 3 chr12 124484815 124485118 -19301337 - AluSq SINE Alu -3 310 2 4571 199 87 40 chr12 124485118 124485425 -19301030 - Charlie1a DNA MER1_type -2469 292 1 1064 299 145 52 chr12 124485529 124486358 -19300097 - L3 LINE CR1 -126 1451 546 243 336 68 48 chr12 124486812 124487062 -19299393 + MIR SINE MIR 2 256 -6 1499 162 25 4 chr12 124488070 124488311 -19298144 + AluJo SINE Alu 37 282 -30 1602 164 33 30 chr12 124488998 124489297 -19297158 + AluJo SINE Alu 1 300 -12 209 380 41 20 chr12 124490109 124490304 -19296151 - L2 LINE L2 -969 2345 2147 604 195 20 163 chr12 124490355 124490606 -19295849 + MIR SINE MIR 37 251 -11 234 0 0 0 chr12 124490613 124490639 -19295816 + (CAT)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr12 124491094 124491115 -19295340 + (A)n Simple_repeat Simple_repeat 1 21 0 745 209 21 132 chr12 124491248 124491535 -19294920 - L1ME3A LINE L1 -4 6166 5912 1303 159 100 26 chr12 124492078 124492240 -19294215 - AluJb SINE Alu -11 291 100 294 29 0 0 chr12 124492240 124492275 -19294180 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1303 159 100 26 chr12 124492275 124492383 -19294072 - AluJb SINE Alu -202 100 1 288 0 0 0 chr12 124493422 124493454 -19293001 + (TG)n Simple_repeat Simple_repeat 2 33 0 1522 167 24 27 chr12 124493545 124493838 -19292617 + AluJo SINE Alu 1 292 -20 185 136 0 45 chr12 124493928 124493972 -19292483 + (GAGAA)n Simple_repeat Simple_repeat 4 45 0 496 180 55 47 chr12 124494354 124494457 -19291998 + MER20 DNA MER1_type 91 197 -22 2178 148 29 0 chr12 124494457 124494808 -19291647 + MER46B DNA MER2_type 1 236 0 496 180 55 47 chr12 124494808 124494832 -19291623 + MER20 DNA MER1_type 197 219 0 318 271 93 0 chr12 124494837 124494944 -19291511 + L2 LINE L2 1512 1628 -1686 2176 117 30 0 chr12 124495137 124495436 -19291019 - AluSg SINE Alu -1 309 2 2112 101 20 10 chr12 124495721 124496018 -19290437 - AluSp SINE Alu -9 304 5 1607 260 123 24 chr12 124496250 124496907 -19289548 + L2 LINE L2 951 1672 -1642 339 25 0 0 chr12 124498021 124498061 -19288394 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr12 124498911 124498939 -19287516 + AT_rich Low_complexity Low_complexity 1 28 0 182 329 25 25 chr12 124499740 124499819 -19286636 + L2 LINE L2 2769 2847 -467 528 16 0 0 chr12 124499870 124499931 -19286524 + (TTTTC)n Simple_repeat Simple_repeat 1 61 0 2002 92 15 7 chr12 124499938 124500210 -19286245 - AluSg SINE Alu -36 274 1 279 350 17 24 chr12 124500746 124500937 -19285518 - MIR SINE MIR -65 143 3 666 257 115 9 chr12 124501416 124501634 -19284821 + MIR SINE MIR 2 242 -20 22 35 0 0 chr12 124502331 124502360 -19284095 + AT_rich Low_complexity Low_complexity 1 29 0 2994 162 63 11 chr12 124502720 124503357 -19283098 - L1MD1 LINE L1 -1 6241 5572 1259 218 83 18 chr12 124503373 124503948 -19282507 - L1MD1 LINE L1 -731 5511 4900 1701 196 40 78 chr12 124503953 124504503 -19281952 - L1MD1 LINE L1 -1681 4465 3937 2261 119 0 0 chr12 124505028 124505340 -19281115 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 124505921 124505948 -19280507 + AT_rich Low_complexity Low_complexity 1 27 0 2216 81 3 17 chr12 124506693 124506990 -19279465 + AluY SINE Alu 1 293 -18 1510 222 66 21 chr12 124506992 124507505 -19278950 + L1M4 LINE L1 2210 2745 -3401 1141 194 14 5 chr12 124507559 124507770 -19278685 + AluJb SINE Alu 85 297 -15 545 250 43 23 chr12 124507775 124508031 -19278424 + L1M4 LINE L1 3045 3305 -2841 289 240 0 13 chr12 124509029 124509104 -19277351 + CT-rich Low_complexity Low_complexity 3 76 0 290 127 127 48 chr12 124510422 124510485 -19275970 + MER110A LTR ERV1 69 136 -332 538 256 141 5 chr12 124510633 124510832 -19275623 + MER110A LTR ERV1 243 468 0 241 170 7 69 chr12 124510875 124510933 -19275522 + MIR SINE MIR 46 107 -101 1510 121 72 24 chr12 124510933 124511223 -19275232 + MLT2A2 LTR ERVL 1 304 -149 669 210 66 6 chr12 124511564 124511731 -19274724 - MER104 DNA MER2_type 0 180 4 243 364 100 0 chr12 124511812 124511952 -19274503 - L2 LINE L2 -9 3263 3110 379 302 60 0 chr12 124511973 124512089 -19274366 + L2 LINE L2 2888 3010 -262 4274 249 70 17 chr12 124512686 124513926 -19272529 - L1MDa LINE L1 -4984 1556 251 311 329 37 31 chr12 124514071 124514232 -19272223 - MIR SINE MIR -81 181 20 229 250 15 15 chr12 124514291 124514359 -19272096 + CT-rich Low_complexity Low_complexity 3 70 0 721 168 0 30 chr12 124515514 124515645 -19270810 - FLAM_A SINE Alu -3 130 4 278 193 0 18 chr12 124516136 124516193 -19270262 - LTR33A LTR ERVL -9 514 459 283 174 0 133 chr12 124517937 124518035 -19268420 + LTR9 LTR ERV1 47 131 -481 213 370 10 0 chr12 124519675 124519775 -19266680 + MIR SINE MIR 40 140 -68 3563 233 71 13 chr12 124520528 124521525 -19264930 + L1MC4a LINE L1 6753 7807 -1 206 296 38 68 chr12 124521862 124521994 -19264461 + MIR SINE MIR 24 151 -111 311 259 44 13 chr12 124522394 124522497 -19263958 + MER91 DNA MER1_type 86 189 -1 224 287 11 11 chr12 124522574 124522661 -19263794 + CT-rich Low_complexity Low_complexity 5 91 0 27 29 0 0 chr12 124523330 124523364 -19263091 + AT_rich Low_complexity Low_complexity 1 34 0 193 276 35 35 chr12 124523597 124523655 -19262800 + L2 LINE L2 3244 3301 -12 608 122 0 0 chr12 124524744 124524834 -19261621 + FLAM_C SINE Alu 30 119 -24 25 51 0 0 chr12 124524837 124524876 -19261579 + AT_rich Low_complexity Low_complexity 1 39 0 1442 163 0 72 chr12 124525746 124525867 -19260588 + AluJo SINE Alu 26 117 -195 1924 134 13 3 chr12 124525867 124526173 -19260282 + AluY SINE Alu 1 309 -2 1442 163 0 72 chr12 124526173 124526327 -19260128 + AluJo SINE Alu 117 281 -31 2237 104 3 0 chr12 124527186 124527483 -19258972 - AluSp SINE Alu -15 298 1 2077 107 21 4 chr12 124528477 124528758 -19257697 - AluSx SINE Alu -15 297 12 417 290 116 52 chr12 124528823 124529133 -19257322 + L1MEd LINE L1 841 1170 -4949 24 0 0 0 chr12 124529246 124529270 -19257185 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 124529736 124529757 -19256698 + AT_rich Low_complexity Low_complexity 1 21 0 2394 91 7 0 chr12 124530503 124530812 -19255643 + AluSp SINE Alu 1 311 -2 392 143 16 0 chr12 124533032 124533095 -19253360 + AluJ/FLAM SINE Alu 3 66 -236 207 225 0 0 chr12 124533098 124533138 -19253317 + A-rich Low_complexity Low_complexity 1 40 0 35 63 0 0 chr12 124533746 124533809 -19252646 + AT_rich Low_complexity Low_complexity 1 63 0 303 320 39 47 chr12 124535562 124535690 -19250765 + MIR SINE MIR 13 139 -123 210 37 0 0 chr12 124536446 124536473 -19249982 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 2246 109 0 3 chr12 124536556 124536860 -19249595 + AluSx SINE Alu 1 303 -9 246 156 0 0 chr12 124538528 124538573 -19247882 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr12 124538885 124538909 -19247546 + AT_rich Low_complexity Low_complexity 1 24 0 1906 108 0 0 chr12 124539093 124539344 -19247111 - AluSx SINE Alu -6 306 56 499 188 0 21 chr12 124540079 124540175 -19246280 + MER7A DNA MER2_type 1 92 -254 744 167 0 49 chr12 124540175 124540319 -19246136 - FLAM_C SINE Alu -6 137 1 1070 152 143 9 chr12 124540319 124540543 -19245912 + MER7A DNA MER2_type 83 336 0 1176 240 10 88 chr12 124540610 124541131 -19245324 + L1MC5 LINE L1 6414 6825 -983 2201 99 3 7 chr12 124541131 124541424 -19245031 + AluSq SINE Alu 1 292 -21 1176 240 10 88 chr12 124541424 124541518 -19244937 + L1MC5 LINE L1 6825 6925 -883 1533 197 10 26 chr12 124541702 124542007 -19244448 + AluJo SINE Alu 1 300 -12 21 36 0 0 chr12 124542114 124542142 -19244313 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr12 124543570 124543603 -19242852 + (TA)n Simple_repeat Simple_repeat 1 33 0 755 208 50 0 chr12 124544229 124544388 -19242067 + MER3 DNA MER1_type 42 208 -1 889 191 42 12 chr12 124545081 124545249 -19241206 - MER6B DNA MER2_type 0 210 38 290 241 11 35 chr12 124546210 124546297 -19240158 + GA-rich Low_complexity Low_complexity 4 88 0 2334 87 6 10 chr12 124546419 124546730 -19239725 - AluSq SINE Alu -2 311 2 228 250 36 0 chr12 124547072 124547156 -19239299 + MER41C LTR ERV1 386 472 -82 245 370 40 10 chr12 124548564 124548664 -19237791 + L2 LINE L2 3169 3271 -1 607 208 15 0 chr12 124549205 124549335 -19237120 - FLAM_C SINE Alu -1 132 1 301 411 16 16 chr12 124550653 124550838 -19235617 + L2 LINE L2 3087 3271 -1 2032 134 3 10 chr12 124551761 124552060 -19234395 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 124552433 124552464 -19233991 + AT_rich Low_complexity Low_complexity 1 31 0 2289 75 0 3 chr12 124552814 124553120 -19233335 - AluSg1 SINE Alu 0 305 1 2220 114 0 0 chr12 124553441 124553731 -19232724 + AluSx SINE Alu 1 290 -22 1780 197 3 0 chr12 124554117 124554416 -19232039 + AluJb SINE Alu 1 300 -12 26 30 0 0 chr12 124554867 124554900 -19231555 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr12 124556356 124556406 -19230049 + AT_rich Low_complexity Low_complexity 1 50 0 1929 138 17 3 chr12 124556450 124556746 -19229709 + AluSp SINE Alu 1 300 -13 321 53 0 0 chr12 124557027 124557065 -19229390 - U6 snRNA snRNA -69 38 1 290 366 11 21 chr12 124557065 124557158 -19229297 - L2 LINE L2 -37 3235 3144 229 338 125 50 chr12 124557465 124557625 -19228830 + L2 LINE L2 3083 3254 -18 1767 138 3 64 chr12 124557705 124558017 -19228438 - AluJb SINE Alu -15 297 5 22 56 0 0 chr12 124558917 124558953 -19227502 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chr12 124559076 124559102 -19227353 + (T)n Simple_repeat Simple_repeat 1 26 0 2127 130 0 0 chr12 124559611 124559910 -19226545 + AluSx SINE Alu 1 299 -13 5437 140 30 30 chr12 124560369 124561343 -19225112 + Tigger1 DNA MER2_type 2 975 -1443 804 196 68 12 chr12 124561344 124561507 -19224948 - FAM SINE Alu -3 172 1 814 123 0 43 chr12 124561963 124562101 -19224354 - FLAM_C SINE Alu -1 132 1 2388 85 3 0 chr12 124563146 124563451 -19223004 + AluSq SINE Alu 1 306 -7 1952 256 45 30 chr12 124564197 124564857 -19221598 + L1MC4 LINE L1 7249 7918 -124 22 0 0 0 chr12 124564863 124564885 -19221570 + AT_rich Low_complexity Low_complexity 1 22 0 2332 115 0 0 chr12 124565834 124566139 -19220316 + AluSx SINE Alu 2 306 -6 21 82 0 0 chr12 124566268 124566317 -19220138 + AT_rich Low_complexity Low_complexity 1 49 0 458 221 92 15 chr12 124566719 124566850 -19219605 - MIR SINE MIR -118 144 4 1854 128 7 7 chr12 124567244 124567558 -19218897 - AluSx SINE Alu 0 314 1 1671 187 3 16 chr12 124567686 124567991 -19218464 - AluSx SINE Alu -11 301 1 2172 95 0 80 chr12 124571843 124572180 -19214275 + AluSg SINE Alu 1 310 0 516 276 213 19 chr12 124572460 124572779 -19213676 - L1ME4a LINE L1 -175 5946 5566 245 192 24 67 chr12 124572932 124573066 -19213389 + MIR SINE MIR 34 261 -1 1931 121 57 7 chr12 124573146 124573427 -19213028 - AluSx SINE Alu -17 295 1 2137 57 40 27 chr12 124573556 124573854 -19212601 - AluY SINE Alu -7 304 3 2528 52 0 3 chr12 124574362 124574668 -19211787 + AluSc SINE Alu 1 305 -4 192 40 0 0 chr12 124574806 124574831 -19211624 + (TG)n Simple_repeat Simple_repeat 1 25 0 2251 63 10 27 chr12 124574927 124575226 -19211229 + AluY SINE Alu 18 311 0 1083 62 19 6 chr12 124575684 124575845 -19210610 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 298 180 0 0 chr12 124575849 124575899 -19210556 - AluS SINE Alu -21 279 230 186 167 0 0 chr12 124575977 124576013 -19210442 + (TG)n Simple_repeat Simple_repeat 2 37 0 750 260 37 29 chr12 124576442 124576688 -19209767 - MIR SINE MIR 0 262 15 807 306 47 47 chr12 124577097 124577180 -19209275 + L1MC4a LINE L1 5339 5421 -2387 2196 132 0 0 chr12 124577180 124577491 -19208964 + AluSx SINE Alu 1 311 -1 807 306 47 47 chr12 124577491 124578009 -19208446 + L1MC4a LINE L1 5420 5940 -1868 348 314 33 8 chr12 124578374 124578495 -19207960 - MIR SINE MIR -126 136 13 396 325 43 37 chr12 124578927 124579115 -19207340 - MIR3 SINE MIR -11 197 9 1839 151 3 41 chr12 124579336 124579653 -19206802 - AluSx SINE Alu -7 305 1 847 247 150 35 chr12 124579801 124580215 -19206240 - L1MC4a LINE L1 -1931 5877 5512 1588 178 76 12 chr12 124580215 124580558 -19205897 - MLT1A1 LTR MaLR 0 365 1 847 247 150 35 chr12 124580558 124580587 -19205868 - L1MC4a LINE L1 -2296 5512 5488 2016 145 51 0 chr12 124580587 124580918 -19205537 - MER7A DNA MER2_type 0 346 1 847 247 150 35 chr12 124580918 124580987 -19205468 - L1MC4a LINE L1 -2320 5488 5305 1602 164 71 0 chr12 124581016 124581285 -19205170 - AluJo SINE Alu -24 288 1 1979 130 0 53 chr12 124581458 124581494 -19204961 - AluSx SINE Alu -3 309 273 210 37 0 0 chr12 124581494 124581521 -19204934 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1979 130 0 53 chr12 124581521 124581807 -19204648 - AluSx SINE Alu -39 273 4 224 297 23 86 chr12 124581876 124582004 -19204451 - MIR SINE MIR -66 142 23 * 448 297 90 31 chr12 124581993 124582215 -19204240 + MIR SINE MIR 24 258 -4 1226 134 127 96 chr12 124582320 124582611 -19203844 - AluJb SINE Alu -7 305 6 199 225 0 0 chr12 124582875 124582915 -19203540 + L2 LINE L2 3220 3259 -13 231 36 0 0 chr12 124582917 124582945 -19203510 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 191 229 115 33 chr12 124582961 124583022 -19203433 + MIR SINE MIR 177 242 -20 425 242 30 0 chr12 124583091 124583190 -19203265 + MIR SINE MIR 45 146 -116 406 281 133 80 chr12 124583244 124583732 -19202723 + L1M2 LINE L1 776 1289 -5560 210 231 0 0 chr12 124583732 124583771 -19202684 + G-rich Low_complexity Low_complexity 5 43 0 21 57 0 0 chr12 124583836 124583871 -19202584 + GC_rich Low_complexity Low_complexity 1 35 0 1175 226 67 94 chr12 124584517 124584926 -19201529 + L1ME1 LINE L1 1419 1795 -4601 2339 85 0 41 chr12 124584926 124585244 -19201211 + AluSx SINE Alu 1 305 -7 1175 226 67 94 chr12 124585244 124585676 -19200779 + L1ME1 LINE L1 1795 2237 -4159 4931 235 65 41 chr12 124585802 124585937 -19200518 + L1ME1 LINE L1 3403 3533 -2710 2167 112 0 32 chr12 124585937 124586250 -19200205 + AluSq SINE Alu 1 303 -10 4931 235 65 41 chr12 124586250 124586705 -19199750 + L1ME1 LINE L1 3533 3976 -2267 2182 100 7 10 chr12 124586705 124587005 -19199450 - AluSx SINE Alu 0 312 14 4931 235 65 41 chr12 124587005 124587424 -19199031 + L1ME1 LINE L1 3976 4384 -1859 1849 143 7 31 chr12 124587424 124587717 -19198738 + AluSx SINE Alu 1 286 -26 4931 235 65 41 chr12 124587717 124588759 -19197696 + L1ME1 LINE L1 4384 5500 -743 938 164 129 0 chr12 124588778 124588979 -19197476 + MER46A DNA MER2_type 10 236 0 427 223 196 41 chr12 124588983 124589203 -19197252 + L1ME1 LINE L1 5521 5774 -459 955 206 129 50 chr12 124589209 124589573 -19196882 + L1ME1 LINE L1 5838 6230 -5 2285 89 31 0 chr12 124589640 124589932 -19196523 - AluSc SINE Alu -8 301 1 759 229 162 20 chr12 124590291 124590544 -19195911 + MLT1J LTR MaLR 83 371 -140 516 237 79 13 chr12 124591193 124591345 -19195110 + MIR SINE MIR 81 242 -20 2361 93 3 0 chr12 124591452 124591753 -19194702 + AluSx SINE Alu 1 302 -10 308 363 65 20 chr12 124591791 124591992 -19194463 + L1MC4a LINE L1 5355 5564 -557 424 276 31 68 chr12 124592042 124592234 -19194221 + L1MC4a LINE L1 5717 5901 -1907 2080 117 20 7 chr12 124594171 124594469 -19191986 + AluSq SINE Alu 1 302 -11 441 305 109 28 chr12 124594755 124595040 -19191415 + L2 LINE L2 2497 2804 -510 22 56 0 0 chr12 124595149 124595185 -19191270 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr12 124596214 124596257 -19190198 + AT_rich Low_complexity Low_complexity 1 43 0 414 276 54 38 chr12 124597144 124597329 -19189126 - MARNA DNA Mariner -371 215 28 603 227 0 0 chr12 124597804 124597914 -19188541 + FLAM_A SINE Alu 1 110 -32 715 130 10 0 chr12 124601476 124601576 -19184879 + FLAM_C SINE Alu 16 116 -27 672 71 80 44 chr12 124601894 124602007 -19184448 - L1PA11 LINE L1 -3 6171 6055 21 36 0 0 chr12 124602194 124602222 -19184233 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr12 124603176 124603205 -19183250 + (T)n Simple_repeat Simple_repeat 1 29 0 2278 103 7 0 chr12 124604284 124604594 -19181861 - AluSp SINE Alu -1 312 1 1919 113 37 10 chr12 124605036 124605336 -19181119 - AluSg SINE Alu -2 308 1 1897 62 22 113 chr12 124605971 124606291 -19180164 - AluYb8 SINE Alu -10 308 18 192 40 0 0 chr12 124606387 124606412 -19180043 + (CA)n Simple_repeat Simple_repeat 1 25 0 2518 56 0 3 chr12 124606550 124606856 -19179599 - AluSc SINE Alu -4 305 1 2259 84 0 17 chr12 124607172 124607471 -19178984 + AluSc SINE Alu 1 294 -15 384 179 39 42 chr12 124607929 124608076 -19178379 - FLAM_C SINE Alu -17 116 1 198 0 0 0 chr12 124608132 124608154 -19178301 + (T)n Simple_repeat Simple_repeat 1 22 0 470 43 0 14 chr12 124608195 124608264 -19178191 + L1PA11 LINE L1 5998 6065 -109 2169 97 6 13 chr12 124608265 124608576 -19177879 + AluSc SINE Alu 1 309 0 189 0 0 0 chr12 124608581 124608602 -19177853 + (CA)n Simple_repeat Simple_repeat 2 22 0 2242 102 23 0 chr12 124609281 124609584 -19176871 - AluSx SINE Alu -2 310 1 413 316 26 66 chr12 124609836 124610108 -19176347 - MIR SINE MIR 0 262 2 862 71 94 0 chr12 124610513 124610640 -19175815 + MER85 DNA T2_type 1 139 0 458 338 0 7 chr12 124610985 124611127 -19175328 + MIR3 SINE MIR 20 160 -48 268 320 170 36 chr12 124611271 124611465 -19174990 + L3 LINE CR1 206 425 -1152 4193 246 93 40 chr12 124611541 124611908 -19174547 + HAL1 LINE L1 2 348 -2159 1673 184 0 4 chr12 124611908 124612185 -19174270 + AluJb SINE Alu 1 276 -36 182 61 0 30 chr12 124612191 124612224 -19174231 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 4193 246 93 40 chr12 124612224 124613770 -19172685 + HAL1 LINE L1 352 2024 -483 952 223 26 18 chr12 124613770 124613999 -19172456 + AluJo SINE Alu 1 231 -81 487 191 22 22 chr12 124614011 124614189 -19172266 + G-rich Low_complexity Low_complexity 1 178 0 454 249 129 5 chr12 124614228 124614445 -19172010 + HAL1 LINE L1 2230 2473 -34 479 323 114 24 chr12 124615072 124615326 -19171129 + L3 LINE CR1 903 1179 -398 271 370 132 7 chr12 124615471 124615752 -19170703 + L3 LINE CR1 1248 1563 -14 785 215 130 10 chr12 124615825 124616025 -19170430 + MER58A DNA MER1_type 1 224 0 444 269 14 7 chr12 124616068 124616209 -19170246 + L1MEc LINE L1 63 204 -6192 987 312 63 38 chr12 124616212 124616985 -19169470 + L1MEc LINE L1 321 1113 -5283 21 0 0 0 chr12 124617486 124617507 -19168948 + AT_rich Low_complexity Low_complexity 1 21 0 371 354 108 0 chr12 124618205 124618363 -19168092 + L2 LINE L2 3092 3266 -6 225 139 0 0 chr12 124619156 124619199 -19167256 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 278 184 0 17 chr12 124620577 124620644 -19165811 - MLT1J LTR MaLR -333 178 137 281 259 82 12 chr12 124620665 124620750 -19165705 - MLT1L LTR MaLR -518 97 7 326 311 28 9 chr12 124620957 124621063 -19165392 - MIR SINE MIR -42 220 113 2389 60 3 13 chr12 124621409 124621723 -19164732 - AluY SINE Alu 0 311 1 1891 127 0 0 chr12 124621742 124622025 -19164430 - AluSx SINE Alu -29 283 1 490 160 30 50 chr12 124622031 124622131 -19164324 + MIR SINE MIR 65 162 -100 483 215 99 8 chr12 124622270 124622391 -19164064 + MIR SINE MIR 61 192 -70 658 245 83 26 chr12 124622440 124622632 -19163823 + MLT1K LTR MaLR 239 441 -147 2135 112 13 0 chr12 124622657 124622960 -19163495 - AluSx SINE Alu -5 307 1 1720 144 19 19 chr12 124623235 124623547 -19162908 - AluJo SINE Alu 0 312 1 319 302 102 63 chr12 124624444 124624642 -19161813 - L2 LINE L2 -3 3310 3098 1759 157 3 7 chr12 124624642 124624935 -19161520 + AluSx SINE Alu 1 292 -20 319 302 102 63 chr12 124624935 124624991 -19161464 - L2 LINE L2 -215 3098 3046 1766 149 151 44 chr12 124624992 124625326 -19161129 - MSTB1 LTR MaLR 0 432 135 2374 77 3 3 chr12 124625326 124625637 -19160818 - AluSp SINE Alu 0 313 3 2198 99 0 3 chr12 124625639 124625941 -19160514 - AluY SINE Alu -9 302 2 1766 149 151 44 chr12 124625941 124625993 -19160462 - MSTB1 LTR MaLR -297 135 1 238 208 0 21 chr12 124625998 124626046 -19160409 - LTR67 LTR ERVL 0 557 511 277 229 46 144 chr12 124626430 124626583 -19159872 + MLT1J LTR MaLR 111 248 -263 415 219 67 25 chr12 124627161 124627307 -19159148 - FLAM_C SINE Alu 0 143 2 198 0 0 0 chr12 124627364 124627386 -19159069 + (T)n Simple_repeat Simple_repeat 1 22 0 878 73 57 146 chr12 124627427 124627497 -19158958 + L1PA11 LINE L1 5998 6073 -101 1975 115 10 0 chr12 124627497 124627792 -19158663 + AluSc SINE Alu 1 298 -11 878 73 57 146 chr12 124627792 124627913 -19158542 + L1PA11 LINE L1 6073 6172 -2 312 206 15 15 chr12 124628415 124628483 -19157972 - L1MC4 LINE L1 -1339 6703 6636 2213 90 0 0 chr12 124628484 124628772 -19157683 - AluSg SINE Alu -22 288 1 267 245 106 33 chr12 124628775 124628926 -19157529 - L1ME LINE L1 -400 5721 5560 500 254 8 0 chr12 124629965 124630083 -19156372 - MIR SINE MIR -72 190 72 537 266 13 32 chr12 124630373 124630527 -19155928 - MIR SINE MIR 0 262 112 627 296 141 19 chr12 124630544 124631028 -19155427 + L2 LINE L2 2570 3147 -166 831 124 0 0 chr12 124631028 124631149 -19155306 + FLAM_C SINE Alu 13 133 -10 22 0 0 0 chr12 124631180 124631202 -19155253 + AT_rich Low_complexity Low_complexity 1 22 0 878 169 0 7 chr12 124631226 124631380 -19155075 + AluJb SINE Alu 145 297 -15 2193 92 3 0 chr12 124631385 124631678 -19154777 + AluSx SINE Alu 1 294 -18 2051 102 0 7 chr12 124631680 124631995 -19154460 + AluY SINE Alu 1 313 0 497 196 78 106 chr12 124632024 124632203 -19154252 + L2 LINE L2 3140 3313 0 220 178 22 22 chr12 124632238 124632283 -19154172 + MIR SINE MIR 217 261 -1 254 233 100 72 chr12 124632686 124632935 -19153520 - L1ME4a LINE L1 0 6121 5866 * 2304 180 32 123 chr12 124632930 124633467 -19152988 - L1ME1 LINE L1 -5 6161 5694 2322 87 3 0 chr12 124633467 124633767 -19152688 - AluSg SINE Alu -9 301 1 2304 180 32 123 chr12 124633767 124633890 -19152565 - L1ME1 LINE L1 -472 5694 5561 454 271 128 0 chr12 124633945 124634078 -19152377 + L2 LINE L2 3153 3302 -11 1544 136 42 102 chr12 124634080 124634412 -19152043 + AluSx SINE Alu 1 312 0 460 326 97 15 chr12 124634509 124634776 -19151679 - L1ME4a LINE L1 -321 5800 5512 182 65 65 22 chr12 124637194 124637240 -19149215 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 890 109 53 0 chr12 124637252 124637519 -19148936 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 201 74 0 0 chr12 124638385 124638412 -19148043 + (TG)n Simple_repeat Simple_repeat 1 27 0 1225 152 46 130 chr12 124638629 124638952 -19147503 + AluJo SINE Alu 1 296 -6 374 218 29 49 chr12 124639204 124639358 -19147097 - L1MC/D LINE L1 -297 5824 5691 515 70 20 40 chr12 124639418 124639518 -19146937 + (GAAA)n Simple_repeat Simple_repeat 1 98 0 1082 215 135 19 chr12 124639535 124639898 -19146557 + L1ME1 LINE L1 5758 6162 -4 1916 148 0 16 chr12 124640254 124640557 -19145898 - AluJb SINE Alu -14 298 1 666 266 34 14 chr12 124640557 124640753 -19145702 + MIR SINE MIR 60 262 0 418 261 127 30 chr12 124640759 124640893 -19145562 + MIR SINE MIR 5 151 -111 1424 259 77 19 chr12 124640897 124641376 -19145079 - LTR33 LTR ERVL 0 521 15 312 91 0 0 chr12 124642535 124642579 -19143876 + (CA)n Simple_repeat Simple_repeat 1 44 0 1917 137 0 0 chr12 124642770 124643084 -19143371 - AluSx SINE Alu 0 314 1 577 253 55 63 chr12 124643226 124643463 -19142992 + MIR SINE MIR 15 249 -13 474 250 118 59 chr12 124644629 124644849 -19141606 + MIR SINE MIR 30 262 0 373 229 183 43 chr12 124645009 124645044 -19141411 - MIR SINE MIR 0 262 233 1516 167 52 14 chr12 124645044 124645332 -19141123 - AluJo SINE Alu -13 299 1 373 229 183 43 chr12 124645332 124645488 -19140967 - MIR SINE MIR -29 233 33 947 194 24 29 chr12 124645554 124645760 -19140695 + MER3 DNA MER1_type 1 205 -4 245 307 58 83 chr12 124645764 124645969 -19140486 - L2 LINE L2 -102 3170 2971 813 260 89 36 chr12 124646438 124646742 -19139713 + L2 LINE L2 2658 2977 -337 264 282 14 0 chr12 124646746 124646817 -19139638 + L2 LINE L2 3185 3256 -57 362 211 48 58 chr12 124646899 124647003 -19139452 - MIR SINE MIR -87 175 73 327 203 114 41 chr12 124647233 124647356 -19139099 - L1ME4a LINE L1 -1 6120 5989 2268 110 0 0 chr12 124647356 124647665 -19138790 - AluSx SINE Alu -3 309 1 794 167 0 0 chr12 124647671 124647803 -19138652 - FLAM_C SINE Alu 0 133 2 1843 139 4 0 chr12 124647811 124648112 -19138343 - AluSx SINE Alu 0 302 1 183 322 267 7 chr12 124648241 124648387 -19138068 + MIR SINE MIR 8 191 -71 714 194 16 16 chr12 124648711 124648840 -19137615 + AluJb SINE Alu 149 277 -35 417 207 89 71 chr12 124648867 124649036 -19137419 + MLT1L LTR MaLR 59 230 -385 342 0 0 0 chr12 124649112 124649150 -19137305 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 1997 124 0 7 chr12 124649154 124649444 -19137011 - AluSx SINE Alu -24 288 1 192 279 0 49 chr12 124649622 124649683 -19136772 - MIR SINE MIR 0 262 205 1082 148 72 10 chr12 124649782 124649991 -19136464 + AluJo SINE Alu 9 230 -82 579 260 47 12 chr12 124649998 124650167 -19136288 - MIR SINE MIR -78 184 10 364 356 6 6 chr12 124650167 124650327 -19136128 + MLT1L LTR MaLR 445 604 -11 621 323 80 24 chr12 124650917 124651223 -19135232 + L1MC4a LINE L1 5591 5822 -344 2930 193 8 8 chr12 124651759 124652344 -19134111 - L1MB5 LINE L1 0 6174 5590 1945 160 0 0 chr12 124652648 124652955 -19133500 + AluJb SINE Alu 1 307 -5 362 261 75 62 chr12 124653172 124653333 -19133122 + MIR SINE MIR 8 170 -92 186 43 0 0 chr12 124653333 124653356 -19133099 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1046 159 24 19 chr12 124653507 124653715 -19132740 - AluJo SINE Alu -7 305 97 965 143 7 0 chr12 124653786 124653940 -19132515 - AluJb SINE Alu -157 155 1 1190 246 183 9 chr12 124653952 124654431 -19132024 - L2 LINE L2 -245 3068 2500 201 297 14 0 chr12 124654425 124654499 -19131956 + MIR SINE MIR 173 247 -15 * 429 130 39 0 chr12 124654786 124654863 -19131592 - MADE1 DNA Mariner 0 80 1 774 205 106 0 chr12 124655787 124655948 -19130507 - MER45A DNA AcHobo 0 178 1 638 150 56 62 chr12 124656143 124656303 -19130152 + L1ME2 LINE L1 6006 6164 0 2000 138 0 0 chr12 124656823 124657120 -19129335 + AluSx SINE Alu 1 297 -15 268 316 240 6 chr12 124657130 124657301 -19129154 + L2 LINE L2 2973 3183 -89 183 129 0 0 chr12 124657401 124657432 -19129023 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 318 87 0 0 chr12 124657988 124658034 -19128421 + (GA)n Simple_repeat Simple_repeat 1 46 0 448 292 88 46 chr12 124658256 124658496 -19127959 + MIR SINE MIR 7 256 -6 1045 234 172 34 chr12 124658635 124658716 -19127739 + MLT1D LTR MaLR 4 72 -433 1696 192 0 0 chr12 124658716 124659024 -19127431 + AluJb SINE Alu 1 308 -4 1045 234 172 34 chr12 124659024 124659383 -19127072 + MLT1D LTR MaLR 72 505 0 527 297 99 22 chr12 124659513 124659535 -19126920 + MIR SINE MIR 12 31 -231 2093 117 7 0 chr12 124659535 124659835 -19126620 - AluSx SINE Alu -10 302 1 527 297 99 22 chr12 124659835 124660044 -19126411 + MIR SINE MIR 31 261 -1 2095 110 7 0 chr12 124663161 124663453 -19123002 - AluSx SINE Alu -18 294 1 464 100 0 14 chr12 124663456 124663526 -19122929 - MER5A DNA MER1_type -118 71 3 525 208 101 27 chr12 124663531 124663680 -19122775 - MER105 DNA DNA -1 203 44 1670 153 3 49 chr12 124663686 124664013 -19122442 - AluJo SINE Alu 0 312 1 1100 139 31 16 chr12 124664027 124664221 -19122234 - MER20 DNA MER1_type -20 199 3 326 310 0 0 chr12 124664290 124664377 -19122078 + L2 LINE L2 3186 3272 0 200 61 61 0 chr12 124664377 124664410 -19122045 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1917 149 0 19 chr12 124665055 124665363 -19121092 + AluJb SINE Alu 3 304 -8 278 244 58 83 chr12 124665663 124665819 -19120636 + MER117 DNA MER1_type 46 197 0 25 31 0 0 chr12 124666355 124666387 -19120068 + AT_rich Low_complexity Low_complexity 1 32 0 1757 155 3 19 chr12 124666830 124667146 -19119309 + AluJo SINE Alu 1 311 -1 319 250 12 12 chr12 124667377 124667457 -19118998 - MIR SINE MIR -11 251 172 1008 217 33 5 chr12 124667518 124667730 -19118725 - MER20 DNA MER1_type 0 219 2 288 0 0 0 chr12 124667948 124667980 -19118475 + (TG)n Simple_repeat Simple_repeat 2 33 0 1963 137 0 0 chr12 124667980 124668264 -19118191 - AluSx SINE Alu -28 284 1 281 236 56 0 chr12 124668428 124668500 -19117955 - MIR SINE MIR -70 192 117 5962 104 18 26 chr12 124668671 124668948 -19117507 + L1PA15 LINE L1 4282 4560 -1605 2238 79 3 10 chr12 124668948 124669251 -19117204 + AluY SINE Alu 1 301 -10 5962 104 18 26 chr12 124669251 124670877 -19115578 + L1PA15 LINE L1 4560 6161 -4 2044 119 7 0 chr12 124671289 124671592 -19114863 - AluSp SINE Alu -8 305 1 2217 70 0 11 chr12 124671625 124671912 -19114543 - AluY SINE Alu -27 284 1 858 136 7 0 chr12 124671917 124672057 -19114398 - FLAM_C SINE Alu -2 141 1 339 325 9 75 chr12 124672063 124672275 -19114180 - MIR SINE MIR -52 210 13 1843 121 50 3 chr12 124672379 124672677 -19113778 + AluSx SINE Alu 1 312 0 2338 70 70 190 chr12 124673127 124673642 -19112813 - MLT2A2 LTR ERVL 0 453 1 827 237 21 16 chr12 124673768 124673958 -19112497 - MIR SINE MIR -33 229 39 2138 103 0 13 chr12 124674541 124674853 -19111602 - AluSx SINE Alu -4 308 1 1502 268 104 52 chr12 124675069 124675625 -19110830 - MLT1K LTR MaLR 0 588 4 387 60 0 0 chr12 124676137 124676187 -19110268 + (CA)n Simple_repeat Simple_repeat 2 51 0 257 313 163 34 chr12 124676238 124676385 -19110070 - MIR SINE MIR -91 171 6 2220 84 0 3 chr12 124676470 124676769 -19109686 - AluSg1 SINE Alu -11 298 1 511 221 30 8 chr12 124676790 124676921 -19109534 - L1ME4a LINE L1 -264 5857 5724 1787 128 14 4 chr12 124676929 124677230 -19109225 - AluSx SINE Alu 0 304 1 312 206 15 15 chr12 124677258 124677326 -19109129 - L1MC4 LINE L1 -1339 6703 6636 2213 90 0 0 chr12 124677327 124677615 -19108840 - AluSg SINE Alu -22 288 1 403 259 81 29 chr12 124677618 124677792 -19108663 - L1ME4a LINE L1 -400 5721 5539 216 158 0 0 chr12 124677802 124677840 -19108615 + CT-rich Low_complexity Low_complexity 1 38 0 682 202 8 0 chr12 124677841 124677965 -19108490 - FLAM_A SINE Alu -7 126 2 2161 97 0 7 chr12 124678287 124678586 -19107869 + AluY SINE Alu 1 297 -14 1813 129 0 30 chr12 124678887 124679182 -19107273 - AluJb SINE Alu -26 286 1 234 217 17 50 chr12 124679306 124679366 -19107089 + L2 LINE L2 3254 3311 -2 225 0 0 0 chr12 124679726 124679751 -19106704 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1893 125 0 0 chr12 124679753 124680032 -19106423 - AluSx SINE Alu -33 279 1 490 160 30 50 chr12 124680038 124680138 -19106317 + MIR SINE MIR 65 162 -100 483 215 99 8 chr12 124680277 124680398 -19106057 + MIR SINE MIR 61 192 -70 658 245 83 26 chr12 124680447 124680639 -19105816 + MLT1K LTR MaLR 239 441 -147 2135 112 13 0 chr12 124680664 124680967 -19105488 - AluSx SINE Alu -5 307 1 1720 144 19 19 chr12 124681242 124681554 -19104901 - AluJo SINE Alu 0 312 1 319 302 102 63 chr12 124682451 124682649 -19103806 - L2 LINE L2 -3 3310 3098 1759 157 3 7 chr12 124682649 124682942 -19103513 + AluSx SINE Alu 1 292 -20 319 302 102 63 chr12 124682942 124682998 -19103457 - L2 LINE L2 -215 3098 3046 1766 149 151 44 chr12 124682999 124683333 -19103122 - MSTB1 LTR MaLR 0 432 135 2374 77 3 3 chr12 124683333 124683644 -19102811 - AluSp SINE Alu 0 313 3 2198 99 0 3 chr12 124683646 124683948 -19102507 - AluY SINE Alu -9 302 2 1766 149 151 44 chr12 124683948 124684000 -19102455 - MSTB1 LTR MaLR -297 135 1 238 208 0 21 chr12 124684005 124684053 -19102402 - LTR67 LTR ERVL 0 557 511 237 316 13 13 chr12 124684419 124684495 -19101960 + LTR67 LTR ERVL 97 172 -385 * 258 186 114 29 chr12 124684437 124684507 -19101948 + MLT1J LTR MaLR 111 186 -325 392 183 56 63 chr12 124684693 124684819 -19101636 + MLT1L LTR MaLR 481 605 -10 933 226 71 53 chr12 124684827 124684969 -19101486 + MLT1I LTR MaLR 1 139 -410 1717 156 29 4 chr12 124684969 124685274 -19101181 - AluSg SINE Alu 0 312 1 933 226 71 53 chr12 124685274 124685556 -19100899 + MLT1I LTR MaLR 139 549 0 412 341 14 0 chr12 124685627 124685765 -19100690 - L2 LINE L2 -264 3049 2910 1752 174 3 0 chr12 124685766 124686059 -19100396 - AluJo SINE Alu -18 294 1 2016 125 7 3 chr12 124686069 124686372 -19100083 - AluSx SINE Alu -8 304 1 281 326 116 43 chr12 124688542 124688775 -19097680 + L1ME4a LINE L1 5461 5710 -411 453 177 81 65 chr12 124688807 124688931 -19097524 + MER58C DNA MER1_type 5 130 -85 824 274 67 21 chr12 124689233 124689606 -19096849 + L1ME4a LINE L1 5729 6118 -3 1813 153 15 15 chr12 124689747 124690076 -19096379 + MER96B DNA MER1_type? 33 362 -51 334 163 38 12 chr12 124690076 124690156 -19096299 + L1MB7 LINE L1 6093 6174 -10 271 217 0 0 chr12 124690156 124690216 -19096239 - MER58 DNA MER1_type -155 186 127 1558 181 7 7 chr12 124690247 124690534 -19095921 - AluJb SINE Alu -25 287 1 650 198 33 0 chr12 124690545 124690666 -19095789 - FLAM_C SINE Alu -17 126 2 511 233 0 0 chr12 124690677 124690793 -19095662 + MER58 DNA MER1_type 51 166 -2254 1674 152 10 45 chr12 124691518 124691705 -19094750 - AluJo SINE Alu -14 298 125 2125 118 0 3 chr12 124691705 124692011 -19094444 + AluSx SINE Alu 1 305 -7 1674 152 10 45 chr12 124692011 124692132 -19094323 - AluJo SINE Alu -187 125 1 287 232 32 63 chr12 124692262 124692357 -19094098 + MIR SINE MIR 164 255 -7 776 199 0 31 chr12 124692532 124692693 -19093762 + FRAM SINE Alu 1 156 -10 24 32 0 0 chr12 124692697 124692728 -19093727 + AT_rich Low_complexity Low_complexity 1 31 0 381 327 63 72 chr12 124692814 124692946 -19093509 - L2 LINE L2 0 3272 3140 1950 105 25 0 chr12 124692946 124693222 -19093233 + AluSx SINE Alu 1 283 -29 381 327 63 72 chr12 124693222 124693241 -19093214 - L2 LINE L2 -132 3140 3122 2389 60 3 13 chr12 124693241 124693555 -19092900 + AluY SINE Alu 1 311 0 381 327 63 72 chr12 124693555 124693735 -19092720 - L2 LINE L2 -150 3122 2943 326 311 28 9 chr12 124693901 124694007 -19092448 + MIR SINE MIR 113 220 -42 281 257 46 31 chr12 124694214 124694387 -19092068 + MLT1L LTR MaLR 7 250 -365 225 139 0 0 chr12 124695764 124695807 -19090648 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 371 354 108 0 chr12 124696600 124696758 -19089697 - L2 LINE L2 -6 3266 3092 2204 102 7 0 chr12 124697584 124697889 -19088566 + AluSx SINE Alu 1 307 -5 241 148 0 37 chr12 124697902 124697956 -19088499 + (TTAA)n Simple_repeat Simple_repeat 3 54 0 1739 167 7 0 chr12 124698223 124698523 -19087932 + AluJb SINE Alu 1 302 -10 227 322 25 17 chr12 124698584 124698702 -19087753 - LTR16B LTR ERVL 0 464 346 1994 116 7 3 chr12 124698747 124699040 -19087415 + AluSx SINE Alu 1 294 -18 357 109 0 0 chr12 124699040 124699095 -19087360 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 545 298 24 12 chr12 124699143 124699311 -19087144 - LTR16B LTR ERVL -166 298 129 3195 157 18 8 chr12 124699365 124699880 -19086575 - MLT2B1 LTR ERVL 0 520 1 227 259 176 9 chr12 124700109 124700217 -19086238 + MER5A DNA MER1_type 1 126 -63 312 48 0 0 chr12 124701118 124701160 -19085295 + (TG)n Simple_repeat Simple_repeat 1 42 0 291 210 30 10 chr12 124701651 124701751 -19084704 + CT-rich Low_complexity Low_complexity 3 104 0 658 133 31 44 chr12 124701765 124701789 -19084666 + CT-rich Low_complexity Low_complexity 1 24 -507 2037 77 0 58 chr12 124701789 124702099 -19084356 - AluY SINE Alu -14 297 6 658 133 31 44 chr12 124702099 124702303 -19084152 + CT-rich Low_complexity Low_complexity 24 531 0 1973 142 3 7 chr12 124702303 124702606 -19083849 - AluSx SINE Alu -6 306 5 515 303 18 0 chr12 124702611 124702776 -19083679 + MLT1K LTR MaLR 420 587 -1 363 241 197 7 chr12 124702955 124703097 -19083358 + MIR SINE MIR 93 260 -2 233 299 0 26 chr12 124703419 124703496 -19082959 - L2 LINE L2 -1 3271 3197 1966 98 0 0 chr12 124703745 124704001 -19082454 - AluSg SINE Alu -54 256 1 2291 178 69 6 chr12 124704001 124704467 -19081988 + L1MB7 LINE L1 5690 6184 0 1994 100 0 32 chr12 124704851 124705160 -19081295 + AluSx SINE Alu 1 299 -13 255 238 71 24 chr12 124705187 124705271 -19081184 + MLT1C LTR MaLR 87 174 -331 626 203 0 36 chr12 124705357 124705495 -19080960 - FLAM_A SINE Alu 0 133 1 992 245 65 4 chr12 124705541 124705786 -19080669 + MLT1C LTR MaLR 208 467 0 2021 125 7 0 chr12 124705975 124706278 -19080177 - AluSx SINE Alu -7 305 1 569 241 35 53 chr12 124706573 124706743 -19079712 - MIR SINE MIR -95 167 1 294 209 15 15 chr12 124706697 124706764 -19079691 + MIR SINE MIR 39 105 -157 * 929 135 0 7 chr12 124706789 124706937 -19079518 - FRAM SINE Alu -6 170 24 2134 120 0 0 chr12 124706942 124707242 -19079213 - AluSx SINE Alu -12 300 1 550 250 70 19 chr12 124707250 124707406 -19079049 + MIR SINE MIR 99 262 0 304 243 262 10 chr12 124708191 124708294 -19078161 - L2 LINE L2 0 3313 3185 648 163 0 0 chr12 124708366 124708464 -19077991 + FRAM SINE Alu 19 116 -60 801 284 107 31 chr12 124708474 124708791 -19077664 - MLT1J2 LTR MaLR 0 450 110 450 353 8 38 chr12 124709009 124709247 -19077208 + MIR SINE MIR 31 261 -1 500 296 35 44 chr12 124709262 124709488 -19076967 + MIR SINE MIR 39 262 0 234 222 19 0 chr12 124709497 124709551 -19076904 - MIR SINE MIR -49 213 159 855 161 13 0 chr12 124709915 124710064 -19076391 - AluJb SINE Alu -25 287 137 205 49 0 148 chr12 124710256 124710317 -19076138 + (CAGGA)n Simple_repeat Simple_repeat 1 52 0 306 0 0 0 chr12 124710912 124710946 -19075509 + (TG)n Simple_repeat Simple_repeat 1 34 0 423 250 81 0 chr12 124711340 124711464 -19074991 + MIR SINE MIR 47 180 -82 1455 168 87 19 chr12 124711465 124711774 -19074681 + MER63B DNA MER1_type 1 330 -106 2061 108 10 0 chr12 124711774 124712069 -19074386 - AluSx SINE Alu -14 298 1 1808 156 20 3 chr12 124712080 124712382 -19074073 - AluJb SINE Alu -1 311 5 547 264 106 25 chr12 124712507 124712742 -19073713 + MIR SINE MIR 1 254 -8 2059 123 0 0 chr12 124713049 124713342 -19073113 + AluSx SINE Alu 1 293 -19 1802 153 0 0 chr12 124713345 124713672 -19072783 + AluSx SINE Alu 1 327 0 1858 116 29 4 chr12 124714199 124714476 -19071979 + AluSx SINE Alu 29 312 0 583 214 141 39 chr12 124714638 124714844 -19071611 - MIR SINE MIR 0 262 36 607 172 75 22 chr12 124714910 124715044 -19071411 - MER96 DNA MER1_type? -2 173 33 461 276 37 15 chr12 124715452 124715586 -19070869 + MIR SINE MIR 14 150 -112 601 203 37 37 chr12 124715607 124715806 -19070649 - MLT1C LTR MaLR -2 465 217 1928 130 3 0 chr12 124715869 124716154 -19070301 + AluSx SINE Alu 3 288 -24 342 0 0 0 chr12 124716158 124716196 -19070259 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 417 207 89 71 chr12 124716272 124716441 -19070014 - MLT1L LTR MaLR -385 230 59 714 194 16 16 chr12 124716468 124716597 -19069858 - AluJb SINE Alu -35 277 149 183 322 267 7 chr12 124716921 124717067 -19069388 - MIR SINE MIR -71 191 8 1844 139 4 0 chr12 124717195 124717496 -19068959 + AluSx SINE Alu 1 302 0 794 167 0 0 chr12 124717504 124717636 -19068819 + FLAM_C SINE Alu 2 133 0 2091 112 10 10 chr12 124717642 124717954 -19068501 + AluSx SINE Alu 1 312 0 189 0 0 0 chr12 124717959 124717980 -19068475 + (CA)n Simple_repeat Simple_repeat 2 22 0 2284 102 23 0 chr12 124718660 124718963 -19067492 - AluSx SINE Alu -2 310 1 396 316 26 66 chr12 124719215 124719487 -19066968 - MIR SINE MIR 0 262 2 874 71 94 0 chr12 124719892 124720019 -19066436 + MER85 DNA T2_type 1 139 0 460 340 4 9 chr12 124720348 124720506 -19065949 + MIR3 SINE MIR 1 160 -48 1876 161 17 0 chr12 124720843 124721142 -19065313 + AluJo SINE Alu 1 304 -8 238 299 0 26 chr12 124721323 124721400 -19065055 + L2 LINE L2 3197 3271 -1 387 254 197 7 chr12 124721722 124721864 -19064591 - MIR SINE MIR -2 260 92 343 315 37 0 chr12 124722044 124722206 -19064249 - MLT1K LTR MaLR -1 587 420 234 250 38 12 chr12 124722211 124722291 -19064164 + AluS SINE Alu 5 86 -217 2530 55 10 0 chr12 124723009 124723338 -19063117 - AluY SINE Alu 0 332 1 189 245 20 0 chr12 124723346 124723395 -19063060 - MIR SINE MIR -65 143 94 2204 102 41 0 chr12 124723508 124723801 -19062654 - AluSx SINE Alu -5 307 3 2237 66 16 35 chr12 124723918 124724235 -19062220 + AluY SINE Alu 1 311 0 1083 62 19 6 chr12 124724693 124724854 -19061601 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 299 180 0 0 chr12 124724858 124724908 -19061547 - AluS SINE Alu -21 280 231 186 167 0 0 chr12 124724986 124725022 -19061433 + (TG)n Simple_repeat Simple_repeat 2 37 0 791 260 37 29 chr12 124725451 124725697 -19060758 - MIR SINE MIR 0 262 15 887 299 52 46 chr12 124726104 124726189 -19060266 + L1MC4a LINE L1 5337 5420 -2388 2230 132 0 0 chr12 124726189 124726500 -19059955 + AluSx SINE Alu 1 311 -1 887 299 52 46 chr12 124726500 124727023 -19059432 + L1MC4a LINE L1 5420 5949 -1859 370 331 16 8 chr12 124727380 124727504 -19058951 - MIR SINE MIR -125 137 13 413 325 43 37 chr12 124727936 124728124 -19058331 - MIR3 SINE MIR -11 197 9 1873 153 3 41 chr12 124728342 124728662 -19057793 - AluSx SINE Alu -4 308 1 899 250 149 35 chr12 124728808 124729224 -19057231 - L1MC4a LINE L1 -1929 5879 5512 1668 181 76 12 chr12 124729224 124729567 -19056888 - MLT1A1 LTR MaLR 0 365 1 899 250 149 35 chr12 124729567 124729596 -19056859 - L1MC4a LINE L1 -2296 5512 5488 2078 145 51 0 chr12 124729596 124729927 -19056528 - MER7A DNA MER2_type 0 346 1 899 250 149 35 chr12 124729927 124729996 -19056459 - L1MC4a LINE L1 -2320 5488 5305 1635 164 71 0 chr12 124730025 124730294 -19056161 - AluJo SINE Alu -24 288 1 2021 130 0 53 chr12 124730467 124730503 -19055952 - AluSx SINE Alu -3 309 273 210 37 0 0 chr12 124730503 124730530 -19055925 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2021 130 0 53 chr12 124730530 124730816 -19055639 - AluSx SINE Alu -39 273 4 222 297 23 86 chr12 124730885 124731013 -19055442 - MIR SINE MIR -66 142 23 * 467 297 90 31 chr12 124731002 124731224 -19055231 + MIR SINE MIR 24 258 -4 1258 134 127 96 chr12 124731329 124731620 -19054835 - AluJb SINE Alu -7 305 6 202 225 0 0 chr12 124731884 124731924 -19054531 + L2 LINE L2 3220 3259 -13 231 36 0 0 chr12 124731926 124731954 -19054501 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 199 229 115 33 chr12 124731970 124732031 -19054424 + MIR SINE MIR 177 242 -20 195 216 0 0 chr12 124732002 124732039 -19054416 + L2 LINE L2 3218 3254 -18 * 450 242 30 0 chr12 124732100 124732199 -19054256 + MIR SINE MIR 45 146 -116 24 32 0 0 chr12 124732445 124732476 -19053979 + GC_rich Low_complexity Low_complexity 1 31 0 195 100 0 0 chr12 124732483 124732513 -19053942 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 214 200 33 0 chr12 124732563 124732623 -19053832 + C-rich Low_complexity Low_complexity 6 67 0 213 262 27 44 chr12 124733241 124733424 -19053031 + (CCCCG)n Simple_repeat Simple_repeat 1 180 0 378 0 0 0 chr12 124734227 124734269 -19052186 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr12 124735158 124735186 -19051269 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr12 124736141 124736170 -19050285 + (T)n Simple_repeat Simple_repeat 1 29 0 2374 97 7 0 chr12 124737247 124737557 -19048898 - AluSp SINE Alu -1 312 1 1965 113 37 10 chr12 124737999 124738299 -19048156 - AluSg SINE Alu -2 308 1 2460 60 7 0 chr12 124738932 124739231 -19047224 - AluY SINE Alu -10 301 1 189 245 20 0 chr12 124739239 124739288 -19047167 - MIR SINE MIR -65 143 94 2225 102 41 0 chr12 124739402 124739697 -19046758 - AluSx SINE Alu -5 307 1 954 138 67 58 chr12 124739701 124739925 -19046530 - Charlie5 DNA MER1_type -153 2459 2234 443 158 18 0 chr12 124739923 124740024 -19046431 - Charlie5 DNA MER1_type -2485 127 23 * 721 266 45 87 chr12 124740137 124740231 -19046224 + MLT1J LTR MaLR 4 100 -411 222 37 0 0 chr12 124740231 124740258 -19046197 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 721 266 45 87 chr12 124740258 124740326 -19046129 + MLT1J LTR MaLR 100 169 -342 1991 120 4 4 chr12 124740326 124740602 -19045853 + AluSx SINE Alu 1 276 -36 183 42 0 0 chr12 124740605 124740629 -19045826 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 721 266 45 87 chr12 124740629 124740991 -19045464 + MLT1J LTR MaLR 171 511 0 331 217 58 0 chr12 124741144 124741213 -19045242 - MIR SINE MIR -120 142 70 2121 131 7 20 chr12 124741222 124741528 -19044927 + AluSx SINE Alu 3 304 -8 337 329 102 12 chr12 124742194 124742361 -19044094 + MIR SINE MIR 46 227 -35 1167 169 202 24 chr12 124742758 124743006 -19043449 - AluSx SINE Alu -20 292 1 2192 114 3 10 chr12 124743014 124743313 -19043142 - AluSg SINE Alu -13 297 1 435 275 169 24 chr12 124743390 124743473 -19042982 - MIR SINE MIR -1 261 191 2188 87 0 0 chr12 124743473 124743737 -19042718 - AluSc SINE Alu -14 295 32 435 275 169 24 chr12 124743737 124743860 -19042595 - MIR SINE MIR -71 191 25 278 322 28 57 chr12 124743866 124744043 -19042412 + L2 LINE L2 2889 3060 -253 931 256 58 59 chr12 124744144 124744391 -19042064 - L2 LINE L2 -86 3227 2981 2155 117 10 16 chr12 124744391 124744527 -19041928 + AluSx SINE Alu 1 136 -176 2535 48 0 7 chr12 124744527 124744821 -19041634 + AluY SINE Alu 1 292 -19 2155 117 10 16 chr12 124744821 124744992 -19041463 + AluSx SINE Alu 136 306 -6 2330 115 0 0 chr12 124744992 124745297 -19041158 + AluSq SINE Alu 1 305 -8 931 256 58 59 chr12 124745297 124745490 -19040965 - L2 LINE L2 -330 2983 2779 612 180 18 9 chr12 124745505 124745616 -19040839 + L2 LINE L2 3136 3247 -25 2170 113 0 35 chr12 124745825 124746144 -19040311 - AluSx SINE Alu -4 308 1 523 184 117 18 chr12 124746995 124747158 -19039297 + MER96B DNA MER1_type? 1 179 -238 25 51 0 0 chr12 124747315 124747354 -19039101 + AT_rich Low_complexity Low_complexity 1 39 0 1737 175 17 3 chr12 124747426 124747718 -19038737 + AluJo SINE Alu 5 300 -12 367 251 75 32 chr12 124747718 124747905 -19038550 + ORSL DNA AcHobo 81 275 0 258 32 0 0 chr12 124747925 124747956 -19038499 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2172 86 7 0 chr12 124747956 124748225 -19038230 - AluSg SINE Alu -27 283 13 641 255 85 1 chr12 124748233 124748429 -19038026 - MIR SINE MIR -50 212 3 485 289 97 48 chr12 124749713 124749941 -19036514 + MIR SINE MIR 12 250 -12 1886 149 44 3 chr12 124749950 124750069 -19036386 + AluJo SINE Alu 5 118 -194 294 29 0 0 chr12 124750069 124750104 -19036351 + (CA)n Simple_repeat Simple_repeat 2 36 0 1886 149 44 3 chr12 124750104 124750279 -19036176 + AluJo SINE Alu 118 311 -1 462 263 0 0 chr12 124750352 124750523 -19035932 + (TG)n Simple_repeat Simple_repeat 1 171 0 534 256 0 0 chr12 124750582 124750762 -19035693 + (TG)n Simple_repeat Simple_repeat 1 180 0 710 218 0 3 chr12 124750786 124751079 -19035376 + (TG)n Simple_repeat Simple_repeat 1 291 0 297 254 0 0 chr12 124751080 124751147 -19035308 + (TATG)n Simple_repeat Simple_repeat 3 69 0 773 214 0 8 chr12 124751147 124751516 -19034939 + (TG)n Simple_repeat Simple_repeat 1 365 0 424 236 19 0 chr12 124752288 124752394 -19034061 + MER81 DNA DNA 2 109 -5 1982 133 20 3 chr12 124752504 124752797 -19033658 + AluJb SINE Alu 1 298 -14 366 243 10 29 chr12 124753540 124753643 -19032812 - MER81 DNA DNA -13 101 1 277 333 125 23 chr12 124753710 124753926 -19032529 + MIR SINE MIR 2 239 -23 224 292 0 73 chr12 124753944 124754040 -19032415 + MIR3 SINE MIR 72 160 -48 748 99 10 0 chr12 124754042 124754143 -19032312 - AluJo SINE Alu -17 295 194 760 175 0 16 chr12 124754161 124754287 -19032168 - AluJo SINE Alu -178 124 1 358 269 48 104 chr12 124754470 124754642 -19031813 - MIR SINE MIR 0 262 107 2024 127 7 0 chr12 124754642 124754926 -19031529 - AluSx SINE Alu -24 288 3 358 269 48 104 chr12 124754926 124755002 -19031453 - MIR SINE MIR -155 107 28 2279 122 3 0 chr12 124755180 124755491 -19030964 - AluSp SINE Alu -1 312 1 1942 148 14 7 chr12 124755869 124756285 -19030170 + AluSx SINE Alu 3 420 0 899 182 45 6 chr12 124756299 124756475 -19029980 + MER58A DNA MER1_type 42 224 0 233 211 0 79 chr12 124757624 124757700 -19028755 + G-rich Low_complexity Low_complexity 3 72 0 279 250 0 0 chr12 124757776 124757892 -19028563 + (CA)n Simple_repeat Simple_repeat 1 116 0 231 264 0 0 chr12 124757904 124758033 -19028422 + (CA)n Simple_repeat Simple_repeat 1 129 0 698 225 164 89 chr12 124758898 124759062 -19027393 + MLT1C LTR MaLR 7 157 -310 2398 113 0 0 chr12 124759062 124759372 -19027083 - AluSx SINE Alu 0 312 3 698 225 164 89 chr12 124759372 124759634 -19026821 + MLT1C LTR MaLR 157 465 -2 481 277 23 15 chr12 124759660 124759790 -19026665 - MIR SINE MIR -118 144 14 560 172 75 22 chr12 124760197 124760331 -19026124 + MER96 DNA MER1_type? 33 173 -2 534 199 151 48 chr12 124760397 124760603 -19025852 + MIR SINE MIR 36 262 0 1997 116 29 4 chr12 124760765 124761042 -19025413 - AluSx SINE Alu 0 312 29 1937 153 0 0 chr12 124761569 124761896 -19024559 - AluSx SINE Alu 0 327 1 2205 125 0 0 chr12 124761896 124762192 -19024263 - AluSx SINE Alu -16 296 1 561 264 106 25 chr12 124762499 124762734 -19023721 - MIR SINE MIR -8 254 1 1959 156 20 3 chr12 124762859 124763161 -19023294 + AluJb SINE Alu 5 311 -1 2208 108 10 0 chr12 124763172 124763467 -19022988 + AluSx SINE Alu 1 298 -14 1370 168 87 19 chr12 124763467 124763776 -19022679 - MER63B DNA MER1_type -106 330 1 429 263 74 0 chr12 124763777 124763922 -19022533 - MIR SINE MIR -61 147 27 306 0 0 0 chr12 124764295 124764329 -19022126 + (CA)n Simple_repeat Simple_repeat 1 34 0 205 49 0 148 chr12 124764924 124764985 -19021470 + (TCCTG)n Simple_repeat Simple_repeat 1 52 0 922 161 13 0 chr12 124765177 124765326 -19021129 + AluJb SINE Alu 137 287 -25 232 222 19 0 chr12 124765691 124765745 -19020710 + MIR SINE MIR 159 213 -49 505 296 35 44 chr12 124765754 124765980 -19020475 - MIR SINE MIR 0 262 39 461 353 8 38 chr12 124765995 124766233 -19020222 - MIR SINE MIR -1 261 31 712 284 107 31 chr12 124766451 124766768 -19019687 + MLT1J2 LTR MaLR 110 450 0 664 163 0 0 chr12 124766778 124766876 -19019579 - FRAM SINE Alu -60 116 19 307 243 262 10 chr12 124766948 124767051 -19019404 + L2 LINE L2 3185 3313 0 260 185 148 0 chr12 124767835 124767889 -19018566 - MIR SINE MIR 0 262 201 378 324 0 32 chr12 124769221 124769406 -19017049 + C-rich Low_complexity Low_complexity 1 179 0 530 176 8 69 chr12 124770947 124771078 -19015377 - FLAM_C SINE Alu -10 123 1 1645 197 3 14 chr12 124771353 124771647 -19014808 - AluJo SINE Alu -21 291 1 191 269 64 0 chr12 124771725 124771803 -19014652 - MIR SINE MIR -123 139 57 2152 122 3 7 chr12 124771864 124772167 -19014288 + AluSq SINE Alu 1 302 -11 263 267 7 0 chr12 124772352 124772487 -19013968 + (TG)n Simple_repeat Simple_repeat 2 137 0 390 247 9 11 chr12 124772561 124773126 -19013329 + (TG)n Simple_repeat Simple_repeat 1 564 0 186 167 0 0 chr12 124773138 124773174 -19013281 + (TG)n Simple_repeat Simple_repeat 2 37 0 319 179 137 42 chr12 124773961 124774056 -19012399 + MIR SINE MIR 118 221 -41 237 139 0 0 chr12 124774096 124774139 -19012316 + (CAT)n Simple_repeat Simple_repeat 1 43 0 2071 138 0 19 chr12 124774227 124774538 -19011917 + AluSx SINE Alu 1 305 -7 730 162 0 44 chr12 124774719 124774855 -19011600 + FLAM_A SINE Alu 1 130 -3 375 339 0 0 chr12 124775003 124775112 -19011343 + MIR SINE MIR 47 155 -107 2595 98 5 0 chr12 124775115 124775482 -19010973 + MER41A LTR ERV1 1 369 -185 1182 67 0 0 chr12 124775482 124775617 -19010838 + AluSq/x SINE Alu 1 135 -178 834 73 41 0 chr12 124775617 124775740 -19010715 + MER41A LTR ERV1 427 554 0 190 323 129 16 chr12 124775879 124776003 -19010452 - L2 LINE L2 -1 3271 3134 2324 99 10 0 chr12 124776285 124776588 -19009867 + AluSq SINE Alu 1 306 -7 2121 138 0 3 chr12 124776606 124776910 -19009545 + AluSx SINE Alu 1 303 -9 401 138 96 21 chr12 124776910 124777004 -19009451 - MLT1C LTR MaLR -302 165 65 438 291 8 8 chr12 124777076 124777193 -19009262 + MIR SINE MIR 34 150 -58 2393 112 0 0 chr12 124777194 124777506 -19008949 + AluSx SINE Alu 1 312 0 291 317 124 7 chr12 124778515 124778660 -19007795 + MIR SINE MIR 34 195 -67 878 252 51 104 chr12 124778669 124778702 -19007753 - LTR67 LTR ERVL -2 555 522 867 221 89 0 chr12 124778702 124778892 -19007563 + MER63A DNA MER1_type 4 210 0 878 252 51 104 chr12 124778892 124779330 -19007125 - LTR67 LTR ERVL -35 522 109 336 200 42 43 chr12 124779377 124779538 -19006917 - MLT1D LTR MaLR -152 353 90 * 960 202 42 24 chr12 124779530 124779743 -19006712 - MER58A DNA MER1_type -6 218 2 2191 108 3 3 chr12 124779901 124780189 -19006266 - AluSx SINE Alu -14 298 11 946 159 0 0 chr12 124780202 124780334 -19006121 - FLAM_C SINE Alu -11 132 1 412 293 122 19 chr12 124780755 124780928 -19005527 + MIR SINE MIR 31 230 -32 2085 148 3 0 chr12 124780928 124781233 -19005222 + AluSx SINE Alu 1 306 -6 412 293 122 19 chr12 124781233 124781264 -19005191 + MIR SINE MIR 230 256 -6 1467 196 12 4 chr12 124781467 124781722 -19004733 - AluJb SINE Alu -53 259 3 1745 167 6 0 chr12 124781725 124782054 -19004401 - L1M4 LINE L1 -577 5607 5277 3314 214 81 48 chr12 124782074 124782175 -19004280 - L1M4c LINE L1 -3960 2686 2590 1776 154 82 17 chr12 124782175 124782468 -19003987 - AluJb SINE Alu 0 312 1 3314 214 81 48 chr12 124782468 124782507 -19003948 - L1M4c LINE L1 -4056 2590 2554 2123 140 0 0 chr12 124782507 124782799 -19003656 - AluSx SINE Alu -16 296 5 3314 214 81 48 chr12 124782799 124784414 -19002041 - L1M4c LINE L1 -4092 2554 835 180 0 0 0 chr12 124784480 124784500 -19001955 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 858 259 20 5 chr12 124784576 124784777 -19001678 + MLT1E LTR MaLR 388 591 -2 298 186 171 116 chr12 124785338 124785381 -19001074 + MIR SINE MIR 117 156 -106 2123 139 7 0 chr12 124785381 124785682 -19000773 + AluSx SINE Alu 1 303 -9 298 186 171 116 chr12 124785682 124785767 -19000688 + MIR SINE MIR 156 252 -10 2091 118 164 13 chr12 124786121 124786493 -18999962 - MSTA LTR MaLR 0 428 1 515 281 35 55 chr12 124786629 124786868 -18999587 - MIR SINE MIR -10 252 14 2271 131 123 5 chr12 124787629 124788012 -18998443 + MSTA LTR MaLR 1 428 0 453 239 15 52 chr12 124788135 124788269 -18998186 + MIR SINE MIR 133 261 -1 478 263 98 8 chr12 124788322 124788455 -18998000 - L2 LINE L2 0 3272 3128 451 188 159 29 chr12 124788501 124788639 -18997816 - MIR SINE MIR -1 261 106 1823 128 4 0 chr12 124788923 124789166 -18997289 + AluSx SINE Alu 8 251 -61 203 0 37 0 chr12 124789166 124789193 -18997262 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1989 156 26 23 chr12 124789298 124789688 -18996767 + Tigger6 DNA MER2_type 4 394 -1203 2191 114 0 0 chr12 124789689 124790012 -18996443 + AluSx SINE Alu 1 323 0 1747 161 48 21 chr12 124790030 124790365 -18996090 - MLT2D LTR ERVL -70 344 1 2183 179 49 45 chr12 124790376 124790653 -18995802 + Tigger6 DNA MER2_type 1066 1347 -250 1860 137 50 4 chr12 124790653 124790931 -18995524 - AluJb SINE Alu -21 291 1 2183 179 49 45 chr12 124790931 124791183 -18995272 + Tigger6 DNA MER2_type 1347 1597 0 2227 110 16 7 chr12 124791301 124791610 -18994845 - AluSx SINE Alu 0 312 1 324 257 86 59 chr12 124792049 124792139 -18994316 - L1ME4a LINE L1 0 6121 6024 1869 185 0 0 chr12 124792139 124792441 -18994014 + AluJo SINE Alu 1 302 -10 324 257 86 59 chr12 124792441 124792502 -18993953 - L1ME4a LINE L1 -97 6024 5966 230 263 285 7 chr12 124792512 124792649 -18993806 + MIR SINE MIR 8 182 -80 1829 205 0 0 chr12 124792724 124793036 -18993419 - AluJo SINE Alu 0 312 1 1997 103 0 0 chr12 124793183 124793436 -18993019 + AluSq SINE Alu 9 261 -52 341 253 30 10 chr12 124793467 124793566 -18992889 + MIR SINE MIR 46 146 -62 1283 207 58 12 chr12 124793813 124794141 -18992314 + MLT1A1 LTR MaLR 6 348 -17 2207 108 14 0 chr12 124794223 124794511 -18991944 - AluSx SINE Alu -20 292 1 303 337 48 0 chr12 124794617 124794700 -18991755 - L2 LINE L2 -43 3229 3143 787 270 78 12 chr12 124794883 124795216 -18991239 - LTR16A1 LTR ERVL -58 399 45 1553 191 22 7 chr12 124795310 124795612 -18990843 + AluJo SINE Alu 1 306 0 333 263 116 0 chr12 124795627 124795722 -18990733 - MIR3 SINE MIR -10 198 93 719 277 62 28 chr12 124795734 124795927 -18990528 - MER102b DNA MER1_type -1096 332 122 288 0 0 0 chr12 124795927 124795959 -18990496 + (TG)n Simple_repeat Simple_repeat 2 33 0 719 277 62 28 chr12 124795959 124796086 -18990369 - MER102b DNA MER1_type -1306 122 1 1692 156 16 71 chr12 124796340 124796380 -18990075 - L1MB5 LINE L1 0 6174 6133 207 0 0 0 chr12 124796380 124796403 -18990052 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2262 102 0 0 chr12 124796403 124796687 -18989768 - AluSx SINE Alu -28 284 1 1692 156 16 71 chr12 124796687 124796779 -18989676 - L1MB5 LINE L1 -40 6134 6038 1913 154 0 38 chr12 124796779 124797098 -18989357 - AluJo SINE Alu -5 307 1 1692 156 16 71 chr12 124797098 124797288 -18989167 - L1MB5 LINE L1 -136 6038 5871 2022 139 6 25 chr12 124797288 124797604 -18988851 - AluSx SINE Alu -2 310 1 1692 156 16 71 chr12 124797604 124797657 -18988798 - L1MB5 LINE L1 -303 5871 5817 692 209 113 46 chr12 124797747 124797807 -18988648 - ORSL DNA AcHobo -2 273 218 2291 122 0 0 chr12 124797807 124798110 -18988345 - AluSx SINE Alu -9 303 1 692 209 113 46 chr12 124798110 124798288 -18988167 - ORSL DNA AcHobo -57 218 19 344 194 11 75 chr12 124798380 124798446 -18988009 + L2 LINE L2 3227 3287 -26 2471 71 3 0 chr12 124798446 124798743 -18987712 - AluSp SINE Alu -15 298 1 344 194 11 75 chr12 124798743 124798769 -18987686 + L2 LINE L2 3287 3313 0 2014 107 4 0 chr12 124798791 124799053 -18987402 - AluSx SINE Alu -49 263 1 24 0 0 0 chr12 124799055 124799079 -18987376 + AT_rich Low_complexity Low_complexity 1 24 0 281 265 114 72 chr12 124800164 124800330 -18986125 - L2 LINE L2 -21 3292 3120 283 284 13 39 chr12 124800703 124800858 -18985597 + G-rich Low_complexity Low_complexity 4 154 0 329 242 109 0 chr12 124801134 124801262 -18985193 + MER103 DNA DNA 8 149 -17 2207 116 3 13 chr12 124801397 124801700 -18984755 + AluSq SINE Alu 1 300 -13 470 271 66 7 chr12 124802503 124802654 -18983801 + MIR SINE MIR 43 202 -60 261 217 0 17 chr12 124803002 124803062 -18983393 + MER20 DNA MER1_type 2 60 -159 751 290 66 27 chr12 124803063 124803428 -18983027 + L1ME4a LINE L1 5517 5895 -226 438 254 66 34 chr12 124803475 124803700 -18982755 + L1ME LINE L1 5353 5584 -578 2139 103 7 3 chr12 124803700 124804008 -18982447 - AluSq SINE Alu 0 309 1 519 205 54 0 chr12 124804008 124804120 -18982335 + MER58B DNA MER1_type 224 341 0 1471 198 0 85 chr12 124804210 124804538 -18981917 - AluJb SINE Alu -12 300 1 188 305 85 0 chr12 124804547 124804606 -18981849 + MIR SINE MIR 106 169 -93 2097 131 0 0 chr12 124804606 124804896 -18981559 + AluSx SINE Alu 1 290 -22 2206 113 0 10 chr12 124805181 124805474 -18980981 + AluSg SINE Alu 12 301 -9 535 283 54 38 chr12 124805699 124805883 -18980572 + MIR SINE MIR 22 208 -54 378 265 29 0 chr12 124805957 124806059 -18980396 - MIR3 SINE MIR -40 168 64 2126 134 3 13 chr12 124806153 124806467 -18979988 - AluSq SINE Alu -2 311 1 489 318 101 19 chr12 124806973 124807291 -18979164 + L2 LINE L2 2969 3312 -1 23 0 0 0 chr12 124807783 124807806 -18978649 + AT_rich Low_complexity Low_complexity 1 23 0 1405 155 0 0 chr12 124808160 124808373 -18978082 - AluSq SINE Alu -100 213 1 1787 163 3 14 chr12 124808383 124808678 -18977777 - AluJo SINE Alu -20 292 1 184 189 189 108 chr12 124808678 124808741 -18977714 - L2 LINE L2 -14 3258 3187 366 164 33 0 chr12 124808828 124808889 -18977566 - MER91B DNA MER1_type -127 63 1 1710 131 64 11 chr12 124809426 124809708 -18976747 + AluJo SINE Alu 1 297 -15 350 240 39 19 chr12 124810522 124810626 -18975829 - MIR SINE MIR -65 143 38 2197 120 7 10 chr12 124810640 124810918 -18975537 + AluSx SINE Alu 5 283 -29 204 40 0 0 chr12 124810918 124810943 -18975512 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 2197 120 7 10 chr12 124810943 124810963 -18975492 + AluSx SINE Alu 283 302 -10 2220 193 20 86 chr12 124810964 124811725 -18974730 - L1MB7 LINE L1 -61 6122 5445 2493 59 3 10 chr12 124811838 124812142 -18974313 - AluY SINE Alu -9 302 1 360 275 18 9 chr12 124812447 124812556 -18973899 - MLT1I LTR MaLR -299 110 1 2005 138 7 0 chr12 124812622 124812918 -18973537 + AluSq SINE Alu 1 298 -15 257 263 137 42 chr12 124812925 124813020 -18973435 - MIR SINE MIR -10 252 149 290 281 0 21 chr12 124813059 124813155 -18973300 - MLT1L LTR MaLR -2 613 520 1658 167 33 50 chr12 124813161 124813461 -18972994 + AluJo SINE Alu 1 295 -17 2335 102 0 0 chr12 124813468 124813773 -18972682 + AluSx SINE Alu 1 305 -7 219 336 36 27 chr12 124814221 124814331 -18972124 - MIR SINE MIR -41 221 111 834 259 147 47 chr12 124814444 124814846 -18971609 - MLT1J2 LTR MaLR 0 450 9 1925 152 0 10 chr12 124814881 124815170 -18971285 - AluJo SINE Alu -25 287 2 228 299 0 0 chr12 124815593 124815670 -18970785 + C-rich Low_complexity Low_complexity 1 77 0 839 224 0 70 chr12 124815821 124816049 -18970406 - AluJo SINE Alu -99 213 2 266 290 210 0 chr12 124816141 124816265 -18970190 - MIR SINE MIR -67 195 46 1981 149 20 0 chr12 124816914 124817210 -18969245 - AluSx SINE Alu -5 307 6 2117 118 7 7 chr12 124817808 124818112 -18968343 - AluSx SINE Alu -8 304 1 354 209 61 76 chr12 124818351 124818629 -18967826 + L1ME4a LINE L1 5847 6116 -5 1093 158 6 0 chr12 124818752 124818923 -18967532 - FRAM SINE Alu -11 165 1 237 310 86 0 chr12 124818983 124819041 -18967414 + L2 LINE L2 3124 3186 -86 486 264 18 18 chr12 124819459 124819622 -18966833 - MER103 DNA DNA -2 164 2 487 235 34 25 chr12 124819929 124820048 -18966407 + MIR3 SINE MIR 4 123 -85 * 1073 104 98 25 chr12 124820046 124820063 -18966392 + AluSq SINE Alu 120 134 -179 2254 104 0 3 chr12 124820063 124820352 -18966103 + AluSg SINE Alu 1 288 -22 1073 104 98 25 chr12 124820352 124820497 -18965958 + AluSq SINE Alu 134 294 -19 453 208 22 11 chr12 124821716 124821847 -18964608 - MLT1H LTR MaLR -390 159 30 315 246 98 57 chr12 124822361 124822483 -18963972 - L2 LINE L2 -17 3296 3170 1565 189 0 48 chr12 124822892 124823017 -18963438 + AluJo SINE Alu 1 130 -182 2264 121 0 3 chr12 124823017 124823324 -18963131 - AluSq SINE Alu -7 306 1 1565 189 0 48 chr12 124823324 124823511 -18962944 + AluJo SINE Alu 130 298 -14 466 241 0 0 chr12 124824236 124824352 -18962103 - MER58 DNA MER1_type -175 166 51 680 190 33 0 chr12 124824363 124824484 -18961971 + FLAM_C SINE Alu 2 126 -17 1688 185 7 7 chr12 124824495 124824782 -18961673 + AluJb SINE Alu 1 287 -25 261 217 0 0 chr12 124824813 124824873 -18961582 + MER58 DNA MER1_type 127 186 -2234 330 163 38 12 chr12 124824873 124824953 -18961502 - L1MB7 LINE L1 -10 6174 6093 1757 150 15 15 chr12 124824953 124825282 -18961173 - MER96B DNA MER1_type? -56 361 33 651 282 67 29 chr12 124825423 124825799 -18960656 - L1ME4a LINE L1 -3 6118 5729 2623 99 25 3 chr12 124826763 124827118 -18959337 + THE1B LTR MaLR 1 363 -1 3374 146 24 78 chr12 124827134 124827839 -18958616 - L1MB7 LINE L1 -16 6168 5502 2066 114 34 14 chr12 124827995 124828292 -18958163 + AluSx SINE Alu 2 304 -8 1536 152 41 8 chr12 124828782 124829026 -18957429 - AluJo SINE Alu -15 297 46 1104 191 0 0 chr12 124829049 124829222 -18957233 - AluJo SINE Alu -139 173 1 2434 176 91 10 chr12 124829228 124829710 -18956745 + MLT1F1 LTR MaLR 41 561 -6 836 269 52 31 chr12 124829709 124830087 -18956368 - MLT1L LTR MaLR -56 559 149 * 277 237 79 125 chr12 124830087 124830239 -18956216 + LTR16B LTR ERVL 1 145 -319 2236 132 3 0 chr12 124830274 124830584 -18955871 - AluSx SINE Alu -1 311 1 237 277 0 72 chr12 124830722 124830805 -18955650 + L2 LINE L2 3184 3260 -12 742 254 29 0 chr12 124831477 124831650 -18954805 - MER45A DNA AcHobo 0 178 1 188 263 0 0 chr12 124831654 124831692 -18954763 - MIR SINE MIR 0 262 225 614 201 149 0 chr12 124831699 124831833 -18954622 + MIR SINE MIR 4 157 -105 221 259 19 0 chr12 124831895 124831949 -18954506 - MIR SINE MIR -56 206 152 646 135 0 39 chr12 124831949 124832092 -18954363 - AluSg/x SINE Alu 0 318 180 268 108 0 0 chr12 124832197 124832258 -18954197 + Alu SINE Alu 244 304 0 2035 120 13 35 chr12 124832714 124833031 -18953424 - AluSx SINE Alu -2 310 1 373 225 147 9 chr12 124833063 124833204 -18953251 - MIR3 SINE MIR -53 155 31 946 159 0 0 chr12 124833625 124833757 -18952698 + FLAM_C SINE Alu 1 132 -11 2191 108 3 3 chr12 124833770 124834058 -18952397 + AluSx SINE Alu 11 298 -14 932 211 42 24 chr12 124834216 124834429 -18952026 + MER58A DNA MER1_type 2 218 -6 297 165 35 82 chr12 124834421 124834506 -18951949 + MLT1D LTR MaLR 90 170 -335 * 231 159 45 0 chr12 124834539 124834583 -18951872 + MLT1D LTR MaLR 308 353 -152 794 264 57 84 chr12 124834630 124835067 -18951388 + LTR67 LTR ERVL 109 533 -24 454 298 44 0 chr12 124835067 124835225 -18951230 - MER63A DNA MER1_type 0 210 46 236 132 0 0 chr12 124835488 124835526 -18950929 + Alu SINE Alu 257 294 -8 683 189 0 0 chr12 124835625 124835736 -18950719 - FLAM_C SINE Alu -30 113 3 2132 112 7 0 chr12 124835978 124836265 -18950190 - AluSx SINE Alu -23 289 1 1909 124 34 17 chr12 124836807 124837098 -18949357 + AluJb SINE Alu 1 296 -16 278 248 184 0 chr12 124837296 124837405 -18949050 + MLT1L LTR MaLR 154 282 -333 1913 140 0 11 chr12 124837580 124837898 -18948557 - AluSx SINE Alu 0 318 4 831 260 54 45 chr12 124838397 124838451 -18948004 + MLT1C LTR MaLR 133 185 -282 3118 166 7 5 chr12 124838451 124839004 -18947451 + L1PA16 LINE L1 5607 6160 -6 831 260 54 45 chr12 124839004 124839280 -18947175 + MLT1C LTR MaLR 185 466 -1 1613 159 91 0 chr12 124839760 124840024 -18946431 - AluJb SINE Alu -24 288 1 237 139 0 0 chr12 124840112 124840155 -18946300 + (ATG)n Simple_repeat Simple_repeat 1 43 0 319 179 137 42 chr12 124840195 124840290 -18946165 - MIR SINE MIR -41 221 118 1972 127 14 17 chr12 124842263 124842554 -18943901 + AluSx SINE Alu 1 290 -22 1127 136 0 0 chr12 124842556 124842710 -18943745 + AluJo/FRAM SINE Alu 136 289 -23 230 300 160 10 chr12 124842774 124842874 -18943581 - MIR SINE MIR -61 147 33 376 193 45 0 chr12 124843222 124843310 -18943145 - MER45 DNA AcHobo -8 1573 1482 2158 116 3 13 chr12 124843312 124843615 -18942840 + AluSx SINE Alu 1 300 -12 1004 143 0 7 chr12 124843620 124843774 -18942681 + FRAM SINE Alu 24 176 0 296 209 15 15 chr12 124843793 124843814 -18942641 - MIR SINE MIR -157 105 85 568 241 35 53 chr12 124843814 124843984 -18942471 + MIR SINE MIR 1 167 -95 290 341 31 16 chr12 124846094 124846223 -18940232 + L1ME LINE L1 5580 5710 -411 418 177 81 65 chr12 124846255 124846379 -18940076 + MER58C DNA MER1_type 5 130 -85 646 203 0 36 chr12 124846811 124846949 -18939506 - FLAM_A SINE Alu 0 133 1 934 239 67 4 chr12 124846995 124847233 -18939222 + MLT1C LTR MaLR 208 460 -7 1889 151 30 7 chr12 124847427 124847732 -18938723 - AluSx SINE Alu 0 312 1 2054 95 0 4 chr12 124848345 124848608 -18937847 - AluSx SINE Alu -2 310 49 268 269 0 51 chr12 124848660 124848738 -18937717 - MLT1K LTR MaLR -327 261 188 2150 92 3 11 chr12 124848794 124849111 -18937344 - AluSc SINE Alu 0 315 1 198 214 24 0 chr12 124849232 124849274 -18937181 - MIR SINE MIR -4 258 216 883 191 51 0 chr12 124849275 124849432 -18937023 - FRAM SINE Alu -1 165 1 1326 102 0 0 chr12 124849442 124849618 -18936837 - AluSg/x SINE Alu -7 305 130 2227 130 0 0 chr12 124850330 124850630 -18935825 + AluSx SINE Alu 1 300 -12 880 248 94 16 chr12 124850646 124850953 -18935502 - MLT1C LTR MaLR 0 467 137 1320 188 39 33 chr12 124850960 124851296 -18935159 + THE1C LTR MaLR 1 338 -37 1533 80 0 0 chr12 124851918 124852106 -18934349 + AluY SINE Alu 1 188 -123 510 90 0 15 chr12 124852106 124852173 -18934282 + AluJo SINE Alu 124 189 -123 326 149 0 30 chr12 124852173 124852240 -18934215 + AluSg/x SINE Alu 124 188 -114 473 104 0 15 chr12 124852240 124852307 -18934148 + AluSc SINE Alu 121 186 -123 1220 123 0 0 chr12 124852307 124852501 -18933954 + AluY SINE Alu 121 314 0 796 261 18 0 chr12 124852609 124852831 -18933624 - LTR16B LTR ERVL -17 447 222 1167 169 202 24 chr12 124854012 124854260 -18932195 - AluSx SINE Alu -20 292 1 2192 114 3 10 chr12 124854268 124854567 -18931888 - AluSg SINE Alu -13 297 1 435 275 169 24 chr12 124854644 124854727 -18931728 - MIR SINE MIR -1 261 191 2188 87 0 0 chr12 124854727 124854991 -18931464 - AluSc SINE Alu -14 295 32 435 275 169 24 chr12 124854991 124855114 -18931341 - MIR SINE MIR -71 191 25 278 322 28 57 chr12 124855120 124855297 -18931158 + L2 LINE L2 2889 3060 -253 535 260 89 41 chr12 124855398 124855644 -18930811 - L2 LINE L2 -86 3227 2970 2155 117 10 16 chr12 124855645 124855781 -18930674 + AluSx SINE Alu 1 136 -176 2535 48 0 7 chr12 124855781 124856075 -18930380 + AluY SINE Alu 1 292 -19 2155 117 10 16 chr12 124856075 124856246 -18930209 + AluSx SINE Alu 136 306 -6 2314 110 0 0 chr12 124856246 124856545 -18929910 + AluSx SINE Alu 1 299 -13 220 310 0 56 chr12 124857098 124857169 -18929286 - MER91 DNA MER1_type -1 189 123 470 206 29 10 chr12 124857195 124857297 -18929158 + MIR SINE MIR 102 205 -57 538 217 47 0 chr12 124857321 124857427 -18929028 + MER81 DNA DNA 4 114 0 1875 147 31 10 chr12 124857471 124857764 -18928691 - AluSx SINE Alu -13 299 1 200 186 0 23 chr12 124857944 124857987 -18928468 + L2 LINE L2 3271 3312 -1 352 301 116 0 chr12 124858082 124858228 -18928227 + MIR SINE MIR 87 249 -13 242 348 25 17 chr12 124858268 124858386 -18928069 - MIR SINE MIR -53 209 91 693 257 17 23 chr12 124859098 124859273 -18927182 - MIR SINE MIR -87 175 2 2263 123 0 0 chr12 124859356 124859658 -18926797 - AluSx SINE Alu -8 304 3 2678 143 36 61 chr12 124859677 124860066 -18926389 - L1MC3 LINE L1 -25 7760 7363 1217 167 78 127 chr12 124860066 124860516 -18925939 + MSTC LTR MaLR 1 428 0 2678 143 36 61 chr12 124860516 124860692 -18925763 - L1MC3 LINE L1 -422 7363 7207 2408 84 0 16 chr12 124860692 124861000 -18925455 - AluSq SINE Alu -10 303 1 819 136 0 16 chr12 124861599 124861724 -18924731 + FLAM_C SINE Alu 11 133 -10 2247 112 7 0 chr12 124861811 124862107 -18924348 - AluSx SINE Alu -14 298 1 667 144 61 0 chr12 124862259 124862391 -18924064 + MER20 DNA MER1_type 78 217 -2 327 85 0 0 chr12 124862490 124862537 -18923918 + (GGA)n Simple_repeat Simple_repeat 1 47 0 731 309 73 7 chr12 124862675 124862976 -18923479 - LTR16A LTR ERVL -129 321 1 192 125 0 0 chr12 124863205 124863237 -18923218 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2160 139 0 0 chr12 124863243 124863544 -18922911 + AluJo SINE Alu 9 309 -3 291 267 133 0 chr12 124863565 124863670 -18922785 - MIR SINE MIR -17 245 127 272 205 2 2 chr12 124863676 124863737 -18922718 - MLT1F1 LTR MaLR -4 538 485 * 1339 220 27 0 chr12 124863736 124864032 -18922423 - MLT1F1 LTR MaLR -263 304 1 560 195 17 0 chr12 124864115 124864233 -18922222 + Charlie5 DNA MER1_type 5 124 -2488 312 159 216 0 chr12 124864247 124864335 -18922120 + Charlie5 DNA MER1_type 2243 2349 -263 1238 121 0 6 chr12 124864335 124864501 -18921954 + AluSg/x SINE Alu 134 298 -12 991 128 15 15 chr12 124864501 124864697 -18921758 + Charlie5 DNA MER1_type 2336 2531 -81 794 173 83 19 chr12 124864713 124864869 -18921586 - FRAM SINE Alu -3 173 8 26 23 0 23 chr12 124864918 124864937 -18921518 + AT_rich Low_complexity Low_complexity 1 19 -24 1872 145 0 7 chr12 124864937 124865213 -18921242 + AluSx SINE Alu 17 290 -22 26 23 0 23 chr12 124865213 124865237 -18921218 + AT_rich Low_complexity Low_complexity 19 43 0 348 331 51 64 chr12 124865971 124866285 -18920170 + L2 LINE L2 2835 3144 -169 2166 129 3 13 chr12 124866311 124866620 -18919835 + AluSx SINE Alu 1 306 -6 864 170 129 0 chr12 124866624 124866793 -18919662 + AluSg/x SINE Alu 118 305 0 710 192 0 0 chr12 124866794 124866914 -18919541 - AluJo/FLAM SINE Alu -182 120 1 286 259 310 0 chr12 124866930 124867046 -18919409 + L2 LINE L2 3158 3309 -4 1971 164 33 46 chr12 124867294 124867751 -18918704 - L1MB7 LINE L1 -1 6183 5733 2078 133 23 3 chr12 124868073 124868375 -18918080 + AluSx SINE Alu 1 308 -4 220 355 153 22 chr12 124868376 124868604 -18917851 + L2 LINE L2 3015 3272 0 410 251 216 23 chr12 124868683 124868854 -18917601 + MIR SINE MIR 16 219 -43 348 19 19 18 chr12 124868858 124868913 -18917542 - MADE1 DNA Mariner 0 80 35 2324 78 7 19 chr12 124869460 124869767 -18916688 + AluSq SINE Alu 1 303 -10 1778 146 40 69 chr12 124869767 124869943 -18916512 + L1MC3 LINE L1 7206 7386 -399 1217 167 78 127 chr12 124869943 124870393 -18916062 - MSTC LTR MaLR 0 428 1 1778 146 40 69 chr12 124870393 124870620 -18915835 + L1MC3 LINE L1 7386 7597 -188 922 140 95 6 chr12 124870620 124870799 -18915656 + L1MC2 LINE L1 6137 6331 -13 2287 119 0 0 chr12 124870801 124871103 -18915352 + AluSx SINE Alu 3 304 -8 683 263 17 23 chr12 124871186 124871361 -18915094 + MIR SINE MIR 2 175 -87 242 348 25 17 chr12 124872073 124872191 -18914264 + MIR SINE MIR 91 209 -53 352 301 116 0 chr12 124872231 124872377 -18914078 - MIR SINE MIR -13 249 87 200 186 0 23 chr12 124872472 124872515 -18913940 - L2 LINE L2 -1 3312 3271 1965 140 31 10 chr12 124872695 124872988 -18913467 + AluSx SINE Alu 1 299 -13 538 217 47 0 chr12 124873032 124873138 -18913317 - MER81 DNA DNA 0 114 4 470 206 29 10 chr12 124873162 124873264 -18913191 - MIR SINE MIR -57 205 102 220 310 0 56 chr12 124873290 124873361 -18913094 + MER91 DNA MER1_type 123 189 -1 2048 108 35 3 chr12 124873916 124874203 -18912252 - AluSx SINE Alu -13 299 4 194 260 151 0 chr12 124874840 124874913 -18911542 + MIR SINE MIR 176 259 -3 212 269 50 67 chr12 124875144 124875168 -18911287 - MIR SINE MIR -121 141 118 2276 117 3 25 chr12 124875168 124875485 -18910970 + AluSx SINE Alu 1 310 -2 212 269 50 67 chr12 124875485 124875579 -18910876 - MIR SINE MIR -144 118 25 204 303 15 0 chr12 124876149 124876164 -18910291 + L2 LINE L2 2906 2919 -353 2445 103 0 0 chr12 124876164 124876475 -18909980 - AluSx SINE Alu -1 311 1 204 303 15 0 chr12 124876475 124876525 -18909930 + L2 LINE L2 2919 2972 -300 354 209 61 76 chr12 124876714 124876992 -18909463 + L1ME4a LINE L1 5847 6116 -5 1093 158 6 0 chr12 124877115 124877286 -18909169 - FRAM SINE Alu -11 165 1 237 310 86 0 chr12 124877346 124877404 -18909051 + L2 LINE L2 3124 3186 -86 486 264 18 18 chr12 124877822 124877985 -18908470 - MER103 DNA DNA -2 164 2 494 237 45 35 chr12 124878292 124878426 -18908029 + MIR SINE MIR 4 143 -119 2311 97 6 6 chr12 124878426 124878737 -18907718 + AluSx SINE Alu 1 311 -1 494 237 45 35 chr12 124878737 124878779 -18907676 + MIR SINE MIR 143 183 -79 2440 156 65 11 chr12 124878849 124879310 -18907145 + MER66B LTR ERV1 1 486 0 2408 49 39 33 chr12 124879624 124879931 -18906524 + AluSg1 SINE Alu 1 309 0 842 163 0 0 chr12 124879933 124880062 -18906393 + FLAM_C SINE Alu 1 129 -4 2220 126 10 0 chr12 124880072 124880381 -18906074 + AluSx SINE Alu 1 312 0 241 315 54 47 chr12 124880433 124880582 -18905873 + MIR SINE MIR 31 180 -82 25 31 0 0 chr12 124881056 124881088 -18905367 + GC_rich Low_complexity Low_complexity 1 32 0 307 226 89 103 chr12 124881565 124881711 -18904744 + MIR SINE MIR 41 184 -78 1619 136 0 83 chr12 124881777 124882079 -18904376 + AluJo SINE Alu 13 289 -23 1201 214 83 23 chr12 124882134 124882216 -18904239 - MER96B DNA MER1_type? -10 407 331 820 134 8 0 chr12 124882216 124882374 -18904081 + FLAM_C SINE Alu 1 159 0 1201 214 83 23 chr12 124882374 124882674 -18903781 - MER96B DNA MER1_type? -86 331 1 285 224 66 0 chr12 124882692 124882768 -18903687 + MIR SINE MIR 106 186 -76 386 211 174 0 chr12 124882778 124882887 -18903568 + MIR SINE MIR 8 135 -127 195 123 0 7 chr12 124883093 124883125 -18903330 + L2 LINE L2 3218 3290 -23 1727 101 4 0 chr12 124883170 124883397 -18903058 - AluSg/x SINE Alu 0 312 85 183 276 171 0 chr12 124883409 124883485 -18902970 + L2 LINE L2 3184 3272 0 238 170 21 0 chr12 124883912 124883959 -18902496 + Charlie8 DNA MER1_type 1357 1404 -1013 2422 119 27 43 chr12 124884411 124884479 -18901976 - THE1B LTR MaLR -1 363 295 2154 107 0 42 chr12 124884479 124884789 -18901666 - AluSg SINE Alu -13 297 1 2422 119 27 43 chr12 124884789 124885089 -18901366 - THE1B LTR MaLR -69 295 1 258 287 130 0 chr12 124885418 124885526 -18900929 + L2 LINE L2 3142 3263 -9 2204 133 0 0 chr12 124885834 124886134 -18900321 + AluSx SINE Alu 1 300 -12 1086 235 96 35 chr12 124886150 124886464 -18899991 - MLT1C LTR MaLR 0 467 123 2105 153 27 21 chr12 124886464 124886837 -18899618 + THE1C LTR MaLR 1 375 0 1086 235 96 35 chr12 124886837 124886917 -18899538 - MLT1C LTR MaLR -344 123 49 355 298 39 10 chr12 124886976 124887080 -18899375 + L2 LINE L2 3206 3312 -1 290 335 165 0 chr12 124887268 124887426 -18899029 + MIR SINE MIR 75 258 -4 449 310 29 6 chr12 124887589 124887763 -18898692 + L1MC4a LINE L1 5760 5937 -1871 2185 118 0 19 chr12 124888018 124888333 -18898122 + AluSx SINE Alu 1 309 -3 2643 61 0 3 chr12 124888838 124889149 -18897306 - AluY SINE Alu -1 310 1 788 203 133 77 chr12 124889455 124889895 -18896560 - MLT1C LTR MaLR -1 466 1 231 341 62 53 chr12 124890037 124890245 -18896210 - MIR SINE MIR -33 229 20 185 276 197 0 chr12 124890987 124891063 -18895392 - L2 LINE L2 -2 3270 3180 191 143 0 24 chr12 124891670 124891712 -18894743 + (TC)n Simple_repeat Simple_repeat 2 42 0 805 189 0 7 chr12 124891740 124891883 -18894572 - FRAM SINE Alu -34 142 1 264 307 53 18 chr12 124892033 124892147 -18894308 - MIR SINE MIR -85 177 60 2005 111 14 0 chr12 124892544 124892846 -18893609 - AluSq SINE Alu 0 306 1 1068 287 84 33 chr12 124892846 124893359 -18893096 + L2 LINE L2 2771 3312 -1 24 0 0 0 chr12 124894424 124894448 -18892007 + AT_rich Low_complexity Low_complexity 1 24 0 2265 124 0 6 chr12 124894450 124894764 -18891691 + AluSx SINE Alu 1 312 0 432 289 32 19 chr12 124894901 124895057 -18891398 - MIR SINE MIR -36 226 69 1277 140 0 0 chr12 124895211 124895397 -18891058 - AluJb SINE Alu -1 311 126 182 37 37 0 chr12 124895881 124895908 -18890547 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1646 177 44 3 chr12 124896246 124896540 -18889915 - AluSx SINE Alu -6 306 1 256 333 20 10 chr12 124897058 124897160 -18889295 + L2 LINE L2 3169 3271 -1 2322 92 0 25 chr12 124897242 124897556 -18888899 + AluSx SINE Alu 1 306 -6 273 119 0 0 chr12 124897556 124897598 -18888857 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 576 132 0 0 chr12 124897698 124897789 -18888666 + AluSg/x SINE Alu 215 305 -4 596 246 16 0 chr12 124897844 124897970 -18888485 + FLAM_A SINE Alu 1 128 -5 354 119 48 12 chr12 124897970 124898054 -18888401 - L1MB3 LINE L1 -13 6170 6084 1970 147 0 26 chr12 124898098 124898410 -18888045 - AluJo SINE Alu -8 304 1 802 163 0 15 chr12 124898429 124898564 -18887891 - FLAM_C SINE Alu 0 133 1 266 290 210 0 chr12 124898655 124898779 -18887676 - MIR SINE MIR -67 195 46 2096 122 21 0 chr12 124899426 124899713 -18886742 - AluSx SINE Alu -14 298 6 2136 161 0 0 chr12 124900313 124900624 -18885831 - AluSx SINE Alu -1 311 1 190 280 20 0 chr12 124900624 124900674 -18885781 + L2 LINE L2 2922 2972 -300 598 210 80 51 chr12 124900857 124900987 -18885468 + MIR SINE MIR 61 199 -63 1865 167 0 22 chr12 124900987 124901304 -18885151 + AluJo SINE Alu 1 310 -2 598 210 80 51 chr12 124901304 124901349 -18885106 + MIR SINE MIR 199 241 -21 403 315 77 0 chr12 124901410 124901553 -18884902 - MIR SINE MIR -2 260 107 2213 117 21 0 chr12 124901585 124901875 -18884580 + AluSx SINE Alu 1 296 -16 1395 226 62 40 chr12 124902486 124902680 -18883775 - MLT1C LTR MaLR 0 467 279 2208 131 0 0 chr12 124902680 124902978 -18883477 - AluSx SINE Alu -14 298 1 1395 226 62 40 chr12 124902978 124903234 -18883221 - MLT1C LTR MaLR -188 279 7 2022 127 0 0 chr12 124903450 124903726 -18882729 - AluSx SINE Alu -36 276 1 316 231 99 0 chr12 124903870 124903961 -18882494 + MER103 DNA DNA 3 102 -64 1380 131 10 0 chr12 124904121 124904319 -18882136 + AluSg/x SINE Alu 95 294 -18 1487 210 58 58 chr12 124904326 124904513 -18881942 + MLT1C LTR MaLR 1 187 -280 3196 159 7 5 chr12 124904513 124905066 -18881389 + L1PA16 LINE L1 5607 6160 -6 1487 210 58 58 chr12 124905066 124905344 -18881111 + MLT1C LTR MaLR 186 466 -1 1367 186 99 4 chr12 124905824 124906087 -18880368 - AluJo SINE Alu -24 288 1 1994 138 3 26 chr12 124906263 124906575 -18879880 + AluJb SINE Alu 1 305 -7 219 336 36 27 chr12 124907023 124907133 -18879322 - MIR SINE MIR -41 221 111 834 259 147 47 chr12 124907246 124907648 -18878807 - MLT1J2 LTR MaLR 0 450 9 1933 152 0 10 chr12 124907683 124907973 -18878482 - AluJo SINE Alu -25 287 1 245 343 29 19 chr12 124908104 124908209 -18878246 - MER5A DNA MER1_type 0 189 84 771 294 51 20 chr12 124908376 124908503 -18877952 + L1ME3A LINE L1 5587 5709 -461 1528 219 16 43 chr12 124908503 124908877 -18877578 + MLT1A1 LTR MaLR 1 364 -1 771 294 51 20 chr12 124908877 124909099 -18877356 + L1ME3A LINE L1 5709 5947 -223 235 677 6 0 chr12 124909234 124909392 -18877063 + C-rich Low_complexity Low_complexity 1 159 0 * 270 176 0 0 chr12 124909355 124909406 -18877049 + CT-rich Low_complexity Low_complexity 2 52 0 346 248 105 0 chr12 124909626 124909759 -18876696 + MER103 DNA DNA 3 149 -17 2207 116 3 13 chr12 124909894 124910197 -18876258 + AluSq SINE Alu 1 300 -13 470 271 66 7 chr12 124910999 124911150 -18875305 + MIR SINE MIR 43 202 -60 261 217 0 17 chr12 124911498 124911558 -18874897 + MER20 DNA MER1_type 2 60 -159 751 290 66 27 chr12 124911559 124911924 -18874531 + L1ME4a LINE L1 5517 5895 -226 550 290 83 115 chr12 124911971 124912196 -18874259 + L1MC4a LINE L1 5353 5584 -537 2041 124 3 0 chr12 124912196 124912504 -18873951 - AluSp SINE Alu 0 309 1 1673 157 7 31 chr12 124912511 124912798 -18873657 - AluJo SINE Alu -21 291 12 550 290 83 115 chr12 124912798 124913129 -18873326 + L1MC4a LINE L1 5590 5930 -191 2371 104 0 0 chr12 124913129 124913436 -18873019 - AluSq SINE Alu -6 307 1 550 290 83 115 chr12 124913436 124913499 -18872956 + L1MC4a LINE L1 5930 5961 -160 3565 93 31 0 chr12 124913499 124913981 -18872474 - LOR1a LTR ERV1 0 497 1 550 290 83 115 chr12 124913981 124914035 -18872420 + L1MC4a LINE L1 5961 6015 -106 287 301 29 15 chr12 124914134 124914270 -18872185 + L1ME4a LINE L1 5963 6100 -21 200 362 37 55 chr12 124914609 124914772 -18871683 - L3b LINE CR1 -127 1456 1297 522 188 9 27 chr12 124914934 124915046 -18871409 + L1MA10 LINE L1 6225 6334 0 2215 130 3 0 chr12 124915049 124915356 -18871099 + AluSq SINE Alu 1 308 -5 564 15 0 0 chr12 124915370 124915435 -18871020 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 334 219 29 86 chr12 124915506 124915611 -18870844 - MIR SINE MIR -62 200 102 305 288 68 93 chr12 124915899 124916082 -18870373 - L2 LINE L2 -97 3175 2998 1991 141 0 46 chr12 124916082 124916409 -18870046 + AluSx SINE Alu 1 312 0 305 288 68 93 chr12 124916409 124916461 -18869994 - L2 LINE L2 -274 2998 2946 894 142 12 138 chr12 124916701 124916783 -18869672 + MER20 DNA MER1_type 1 92 -127 1963 123 0 31 chr12 124916783 124917075 -18869380 + AluSx SINE Alu 1 283 -29 894 142 12 138 chr12 124917075 124917238 -18869217 + MER20 DNA MER1_type 92 215 -4 1862 145 0 51 chr12 124918215 124918526 -18867929 + AluJo SINE Alu 5 299 -13 709 148 35 0 chr12 124918546 124918661 -18867794 - Charlie3 DNA MER1_type -2591 119 1 1518 175 23 3 chr12 124918661 124918964 -18867491 - L1MB7 LINE L1 -230 5954 5646 249 137 50 12 chr12 124919314 124919368 -18867087 - MIR SINE MIR -103 159 104 483 182 41 136 chr12 124919874 124920094 -18866361 - MIR SINE MIR -13 249 51 357 271 149 7 chr12 124920185 124920360 -18866095 + MIR SINE MIR 30 261 -1 410 261 48 67 chr12 124920543 124920632 -18865823 + MIR SINE MIR 58 144 -118 2448 55 7 7 chr12 124920632 124920924 -18865531 + AluY SINE Alu 1 292 -19 410 261 48 67 chr12 124920924 124920999 -18865456 + MIR SINE MIR 144 219 -43 1645 197 3 14 chr12 124921038 124921332 -18865123 - AluJo SINE Alu -21 291 1 203 281 56 0 chr12 124921410 124921499 -18864956 - MIR SINE MIR -123 139 46 1666 48 0 0 chr12 124921550 124921738 -18864717 + AluY SINE Alu 1 188 -123 510 90 0 15 chr12 124921738 124921805 -18864650 + AluJb SINE Alu 124 189 -123 483 103 0 15 chr12 124921804 124921872 -18864583 + AluJb SINE Alu 123 189 -123 * 483 103 0 15 chr12 124921871 124921939 -18864516 + AluSc SINE Alu 121 187 -122 * 1172 111 0 3 chr12 124921938 124922132 -18864323 + AluY SINE Alu 121 283 -28 1179 254 61 56 chr12 124922240 124922497 -18863958 - LTR16B LTR ERVL -17 447 186 2157 127 0 0 chr12 124922497 124922804 -18863651 + AluSx SINE Alu 6 312 0 1179 254 61 56 chr12 124922804 124922991 -18863464 - LTR16B LTR ERVL -278 186 1 446 261 39 8 chr12 124923002 124923132 -18863323 + MLT1L LTR MaLR 145 278 -337 * 893 251 37 16 chr12 124923115 124923369 -18863086 + MLT1L LTR MaLR 213 559 -56 * 2608 176 91 10 chr12 124923368 124923850 -18862605 - MLT1F1 LTR MaLR -6 561 41 723 218 0 0 chr12 124923856 124923989 -18862466 + AluJo/FLAM SINE Alu 1 133 -169 298 150 0 0 chr12 124923989 124924029 -18862426 + AluY SINE Alu 133 172 -129 1413 152 41 8 chr12 124924052 124924296 -18862159 + AluJo SINE Alu 46 297 -15 1918 114 34 14 chr12 124924786 124925083 -18861372 - AluSx SINE Alu -9 303 1 638 280 40 81 chr12 124925133 124925238 -18861217 - L1ME3A LINE L1 -220 5950 5842 3372 145 24 78 chr12 124925238 124925943 -18860512 + L1MB7 LINE L1 5502 6168 -16 638 280 40 81 chr12 124925943 124925959 -18860496 - L1ME3A LINE L1 -328 5842 5827 2603 99 25 3 chr12 124925959 124926314 -18860141 - THE1B LTR MaLR -1 363 1 638 280 40 81 chr12 124926314 124926563 -18859892 - L1ME3A LINE L1 -343 5827 5594 1999 102 11 0 chr12 124927127 124927401 -18859054 + AluSx SINE Alu 30 306 -6 341 191 16 0 chr12 124927401 124927464 -18858991 - Charlie4 DNA MER1_type -1871 90 27 378 320 66 31 chr12 124927722 124927950 -18858505 + MIR SINE MIR 9 244 -18 537 170 20 39 chr12 124928231 124928553 -18857902 + CT-rich Low_complexity Low_complexity 1 315 0 195 219 0 0 chr12 124929268 124929309 -18857146 + L2 LINE L2 3268 3308 -5 1906 123 3 3 chr12 124929333 124929618 -18856837 + AluSx SINE Alu 1 285 -27 256 156 0 0 chr12 124929812 124929857 -18856598 - L2 LINE L2 0 3313 3269 1559 170 0 42 chr12 124930039 124930351 -18856104 + AluJo SINE Alu 1 299 -13 203 355 161 0 chr12 124930422 124930546 -18855909 + MIR3 SINE MIR 58 201 -7 275 239 76 0 chr12 124931012 124931104 -18855351 - L1ME4a LINE L1 -67 6054 5956 388 319 12 24 chr12 124931130 124931299 -18855156 - L1ME4a LINE L1 -340 5781 5615 2171 108 0 3 chr12 124932497 124932793 -18853662 - AluSx SINE Alu -17 295 1 357 184 20 61 chr12 124933005 124933103 -18853352 + AluJ/FLAM SINE Alu 6 99 -203 1689 116 0 0 chr12 124933203 124933445 -18853010 + AluSg/x SINE Alu 69 310 0 277 208 0 7 chr12 124933459 124933508 -18852947 + AluSg/x SINE Alu 144 180 -122 1520 168 58 14 chr12 124933508 124933799 -18852656 + AluJo SINE Alu 6 309 -3 277 208 0 7 chr12 124933799 124933812 -18852643 + AluSg/x SINE Alu 180 192 -110 216 267 60 35 chr12 124933849 124933965 -18852490 - L2 LINE L2 -618 2696 2578 293 328 102 0 chr12 124934152 124934280 -18852175 + MIR SINE MIR 41 181 -81 201 224 0 60 chr12 124935029 124935096 -18851359 + G-rich Low_complexity Low_complexity 3 65 0 188 67 33 0 chr12 124935289 124935319 -18851136 + (TCC)n Simple_repeat Simple_repeat 1 31 0 210 222 0 63 chr12 124935626 124935689 -18850766 + C-rich Low_complexity Low_complexity 1 59 0 269 306 204 19 chr12 124936184 124936292 -18850163 + MIR SINE MIR 25 152 -110 225 0 0 0 chr12 124936570 124936595 -18849860 + (A)n Simple_repeat Simple_repeat 1 25 0 267 293 60 60 chr12 124936604 124936754 -18849701 + MIR SINE MIR 57 206 -56 216 0 0 0 chr12 124936754 124936778 -18849677 + (A)n Simple_repeat Simple_repeat 1 24 0 2271 100 0 0 chr12 124936986 124937287 -18849168 - AluSx SINE Alu -11 301 1 506 271 12 53 chr12 124937301 124937471 -18848984 + L2 LINE L2 3151 3313 0 1845 120 27 20 chr12 124937985 124938284 -18848171 - AluSx SINE Alu -9 303 3 1097 283 163 14 chr12 124939435 124939920 -18846535 - MLT1K LTR MaLR 0 588 32 674 271 84 19 chr12 124940865 124941079 -18845376 - MIR SINE MIR -4 258 31 402 195 0 0 chr12 124941686 124941768 -18844687 + MER113 DNA MER1_type? 30 111 -410 316 83 50 33 chr12 124941785 124941845 -18844610 - L1MB5 LINE L1 0 6174 6114 2261 166 26 14 chr12 124941882 124942297 -18844158 - L1MB5 LINE L1 -46 6128 5709 180 0 0 0 chr12 124942303 124942323 -18844132 + (TTTAG)n Simple_repeat Simple_repeat 3 22 0 681 167 0 0 chr12 124942323 124942425 -18844030 - AluSg/x SINE Alu -28 282 181 843 86 0 0 chr12 124942527 124942644 -18843811 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 235 298 131 0 chr12 124942865 124942949 -18843506 + MIR SINE MIR 15 109 -153 228 152 0 0 chr12 124942939 124942972 -18843483 + MIR SINE MIR 219 251 -11 * 1307 216 61 51 chr12 124943071 124943529 -18842926 - MLT1C LTR MaLR 0 467 1 716 161 81 112 chr12 124944522 124944651 -18841804 - MLT1B LTR MaLR -201 266 166 2005 116 20 3 chr12 124944651 124944953 -18841502 + AluSq SINE Alu 1 307 -6 716 161 81 112 chr12 124944953 124945098 -18841357 - MLT1B LTR MaLR -301 166 18 180 179 0 0 chr12 124945306 124945345 -18841110 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 351 253 45 71 chr12 124945359 124945513 -18840942 + L2 LINE L2 3152 3301 -12 244 298 79 13 chr12 124946234 124946388 -18840067 + MIR SINE MIR 30 192 -70 200 33 0 33 chr12 124946535 124946565 -18839890 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 315 254 273 9 chr12 124946752 124946862 -18839593 + L2 LINE L2 3134 3272 0 403 216 17 0 chr12 124946862 124946978 -18839477 + (TGGA)n Simple_repeat Simple_repeat 2 119 0 747 168 6 17 chr12 124947000 124947179 -18839276 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1595 183 35 29 chr12 124947274 124947642 -18838813 - MLT1C LTR MaLR -117 388 1 249 395 58 12 chr12 124947644 124947902 -18838553 + L1ME LINE L1 5616 5885 -285 394 324 90 40 chr12 124948603 124948949 -18837506 - Charlie8 DNA MER1_type -1958 459 97 1696 187 6 24 chr12 124948969 124949300 -18837155 + L1MB5 LINE L1 5430 5754 -420 1700 179 10 3 chr12 124949302 124949610 -18836845 + L1MB5 LINE L1 5833 6142 -32 2202 119 0 0 chr12 124949611 124949922 -18836533 + AluSx SINE Alu 2 312 0 780 134 22 37 chr12 124949947 124950081 -18836374 + FLAM_C SINE Alu 2 133 0 256 125 0 0 chr12 124950091 124950139 -18836316 + L1MB5 LINE L1 6127 6174 0 234 258 100 92 chr12 124950305 124950425 -18836030 - MIR SINE MIR -67 141 21 2149 118 0 10 chr12 124950529 124950842 -18835613 + AluSx SINE Alu 1 310 -2 1144 202 9 14 chr12 124951358 124951576 -18834879 - MER20 DNA MER1_type -1 218 2 4189 57 43 0 chr12 124951707 124952238 -18834217 - MER41A LTR ERV1 0 554 1 334 287 11 0 chr12 124952375 124952462 -18833993 - MIR SINE MIR -126 136 49 1246 297 48 28 chr12 124952694 124953192 -18833263 - MLT1K LTR MaLR -1 587 80 1950 143 0 0 chr12 124953433 124953719 -18832736 - AluSx SINE Alu -24 288 3 1639 119 105 7 chr12 124953816 124954093 -18832362 - AluJo SINE Alu -5 307 4 326 137 39 227 chr12 124954194 124954388 -18832067 - MIR SINE MIR -67 141 30 630 39 0 0 chr12 124955846 124955923 -18830532 + (TA)n Simple_repeat Simple_repeat 1 77 0 2068 97 7 0 chr12 124955925 124956204 -18830251 - AluSx SINE Alu -31 281 1 601 171 67 116 chr12 124956265 124956458 -18829997 + MLT1K LTR MaLR 27 210 -257 315 226 0 71 chr12 124956435 124956519 -18829936 + AluJo SINE Alu 85 162 -140 * 1236 168 0 0 chr12 124956619 124956815 -18829640 + AluSg/x SINE Alu 96 291 -21 1115 138 0 0 chr12 124956821 124956981 -18829474 + AluJo SINE Alu 140 299 -3 732 221 27 0 chr12 124957373 124957522 -18828933 + MIR SINE MIR 56 208 -54 1073 263 103 11 chr12 124957728 124958078 -18828377 + MLT1K LTR MaLR 207 588 0 306 185 141 11 chr12 124958103 124958195 -18828260 - MIR SINE MIR -97 165 62 184 338 27 0 chr12 124958238 124958312 -18828143 + MIR SINE MIR 78 153 -55 3707 292 43 39 chr12 124958517 124958646 -18827809 - L1MEc LINE L1 -4545 1851 1724 1991 108 14 4 chr12 124958646 124958946 -18827509 - AluSp SINE Alu 0 305 3 3707 292 43 39 chr12 124958946 124959605 -18826850 - L1MEc LINE L1 -4672 1724 1069 792 188 0 0 chr12 124959605 124959733 -18826722 - FLAM_A SINE Alu -5 128 1 3707 292 43 39 chr12 124959733 124960749 -18825706 - L1MEc LINE L1 -5327 1069 38 2220 108 13 53 chr12 124960892 124961271 -18825184 - THE1B LTR MaLR 0 364 1 291 276 35 0 chr12 124961456 124961543 -18824912 - MLT1K LTR MaLR -489 99 10 200 238 0 0 chr12 124962239 124962281 -18824174 - MIR SINE MIR -108 154 113 207 0 0 0 chr12 124962306 124962329 -18824126 + (A)n Simple_repeat Simple_repeat 1 23 0 2155 119 3 0 chr12 124962339 124962650 -18823805 + AluSx SINE Alu 1 312 0 240 218 0 18 chr12 124962732 124962787 -18823668 + GA-rich Low_complexity Low_complexity 1 54 0 1502 174 4 0 chr12 124963173 124963448 -18823007 + AluSx SINE Alu 37 312 0 263 194 0 45 chr12 124963515 124963582 -18822873 + GA-rich Low_complexity Low_complexity 3 66 0 2113 120 0 0 chr12 124963953 124964254 -18822201 + AluSx SINE Alu 1 301 -11 368 291 0 12 chr12 124964436 124964522 -18821933 + L2 LINE L2 3188 3272 0 316 255 113 19 chr12 124964924 124965030 -18821425 - MLT1G1 LTR MaLR -46 549 434 1155 157 173 96 chr12 124965036 124965343 -18821112 + MSTC LTR MaLR 5 350 -78 2171 85 16 10 chr12 124965343 124965649 -18820806 - AluY SINE Alu -3 308 1 1155 157 173 96 chr12 124965649 124965735 -18820720 + MSTC LTR MaLR 350 428 0 234 402 39 16 chr12 124965963 124966090 -18820365 + L2 LINE L2 3134 3263 -9 205 213 67 13 chr12 124966184 124966259 -18820196 + A-rich Low_complexity Low_complexity 3 81 0 2066 100 0 0 chr12 124966261 124966566 -18819889 + AluSc SINE Alu 1 305 0 2175 126 69 20 chr12 124966675 124966923 -18819532 + MER47A DNA MER2_type 1 272 -2051 2038 117 90 32 chr12 124966923 124967266 -18819189 + THE1B LTR MaLR 1 363 -1 2175 126 69 20 chr12 124967266 124967366 -18819089 + MER47A DNA MER2_type 272 366 0 435 204 56 19 chr12 124967698 124967806 -18818649 - MER103 DNA DNA -2 164 53 2505 58 0 3 chr12 124967956 124968268 -18818187 - AluY SINE Alu 0 311 1 2336 71 0 0 chr12 124968854 124969151 -18817304 - AluY SINE Alu -14 297 1 1616 163 23 17 chr12 124969410 124969711 -18816744 - AluSx SINE Alu -9 303 1 930 273 69 50 chr12 124969945 124969995 -18816460 + L1ME LINE L1 5221 5269 -893 1989 117 40 0 chr12 124969995 124970295 -18816160 - AluSx SINE Alu 0 312 1 930 273 69 50 chr12 124970295 124970838 -18815617 + L1ME LINE L1 5269 5818 -344 1731 153 3 17 chr12 124970860 124971154 -18815301 + AluJo SINE Alu 14 303 -9 873 97 0 0 chr12 124971209 124971323 -18815132 - AluSq/x SINE Alu -178 134 21 1876 99 84 0 chr12 124971411 124971684 -18814771 + AluSp SINE Alu 4 299 -14 25 31 0 0 chr12 124971690 124971722 -18814733 + AT_rich Low_complexity Low_complexity 1 32 0 491 244 0 47 chr12 124972210 124972337 -18814118 - MER58A DNA MER1_type 0 224 104 517 241 17 0 chr12 124973090 124973206 -18813249 - MER58A DNA MER1_type 0 118 1 2117 135 0 0 chr12 124973250 124973565 -18812890 + AluSq SINE Alu 1 313 0 1230 251 80 108 chr12 124973600 124974655 -18811800 - L1ME3A LINE L1 -37 6133 5114 618 131 41 7 chr12 124974655 124974800 -18811655 + CT-rich Low_complexity Low_complexity 1 150 0 287 159 0 0 chr12 124974800 124974844 -18811611 + polypyrimidine Low_complexity Low_complexity 2 45 0 1724 153 0 28 chr12 124974845 124975132 -18811323 - AluJb SINE Alu -33 279 1 2239 127 7 0 chr12 124975163 124975471 -18810984 - AluSx SINE Alu -2 310 1 786 269 58 61 chr12 124975641 124975891 -18810564 + MLT1H1 LTR MaLR 35 284 -271 2084 124 37 0 chr12 124975891 124976190 -18810265 + AluSx SINE Alu 1 310 -2 786 269 58 61 chr12 124976190 124976450 -18810005 + MLT1H1 LTR MaLR 284 497 -58 1992 136 4 0 chr12 124976450 124976760 -18809695 + AluSx SINE Alu 1 311 0 786 269 58 61 chr12 124976760 124976819 -18809636 + MLT1H1 LTR MaLR 497 555 0 1904 139 98 9 chr12 124977443 124977780 -18808675 + MSTB LTR MaLR 1 367 -59 580 110 0 0 chr12 124977780 124977887 -18808568 + AluSg/x SINE Alu 215 321 0 1761 164 22 19 chr12 124977906 124978217 -18808238 - AluJb SINE Alu 0 312 1 432 205 34 43 chr12 124978217 124978334 -18808121 - MLT1C LTR MaLR -228 239 124 280 280 44 104 chr12 124978376 124978558 -18807897 + L2 LINE L2 3128 3298 -15 180 111 0 0 chr12 124978560 124978587 -18807868 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2242 120 3 0 chr12 124978652 124978953 -18807502 - AluSx SINE Alu -10 302 1 228 360 11 11 chr12 124979016 124979105 -18807350 - MIR SINE MIR -150 112 24 837 200 0 0 chr12 124979112 124979262 -18807193 - AluJo SINE Alu -162 150 1 309 330 10 29 chr12 124980206 124980309 -18806146 - L2 LINE L2 -5 3308 3208 1442 216 3 65 chr12 124980454 124980778 -18805677 - AluJb SINE Alu -8 304 1 2211 156 88 13 chr12 124980845 124981243 -18805212 + MSTA LTR MaLR 1 428 0 1948 206 61 53 chr12 124981296 124981820 -18804635 + MLT1F LTR MaLR 7 534 -8 2213 112 0 40 chr12 124982361 124982684 -18803771 + AluSg SINE Alu 1 310 0 489 246 35 0 chr12 124982776 124982890 -18803565 + MIR SINE MIR 52 169 -93 669 175 11 6 chr12 124983843 124984020 -18802435 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 212 167 0 19 chr12 124984126 124984180 -18802275 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 297 295 148 34 chr12 124984242 124984391 -18802064 - L2 LINE L2 -34 3238 3073 617 272 191 22 chr12 124984552 124984909 -18801546 + MLT1K LTR MaLR 63 479 -109 614 75 0 11 chr12 124985059 124985153 -18801302 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 510 287 0 0 chr12 124985251 124985366 -18801089 + MIR3 SINE MIR 46 160 -48 1913 171 39 78 chr12 124985429 124985656 -18800799 + MLT1C LTR MaLR 3 203 -264 2076 133 7 3 chr12 124985656 124985964 -18800491 + AluJo SINE Alu 1 309 -3 1913 171 39 78 chr12 124985964 124986220 -18800235 + MLT1C LTR MaLR 203 467 0 528 187 57 0 chr12 124986239 124986362 -18800093 - MER103 DNA DNA -26 140 11 2316 84 0 7 chr12 124986488 124986806 -18799649 - AluSx SINE Alu 0 320 5 953 169 34 6 chr12 124987123 124987300 -18799155 - MER20 DNA MER1_type -37 182 1 400 265 58 79 chr12 124987312 124987435 -18799020 - L1MC/D LINE L1 -1984 5824 5705 2452 64 0 7 chr12 124987435 124987732 -18798723 - AluY SINE Alu -15 296 2 400 265 58 79 chr12 124987732 124987797 -18798658 - L1MC/D LINE L1 -2103 5705 5640 1751 152 88 0 chr12 124987864 124987982 -18798473 + AluSx SINE Alu 1 107 -205 207 69 0 0 chr12 124987982 124988011 -18798444 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1751 152 88 0 chr12 124988011 124988175 -18798280 + AluSx SINE Alu 107 308 -4 633 226 107 39 chr12 124988184 124988439 -18798016 + MLT1K LTR MaLR 346 579 -9 192 267 217 0 chr12 124988581 124988641 -18797814 + L2 LINE L2 3241 3313 0 1664 173 30 10 chr12 124989207 124989502 -18796953 + AluJo SINE Alu 1 301 -11 1770 166 0 42 chr12 124989504 124989640 -18796815 + AluJo SINE Alu 1 141 -171 2264 110 3 3 chr12 124989640 124989949 -18796506 + AluSc SINE Alu 1 309 0 1770 166 0 42 chr12 124989949 124990125 -18796330 + AluJo SINE Alu 141 300 -12 402 293 141 26 chr12 124990170 124990284 -18796171 - L2 LINE L2 -18 3295 3196 2468 91 0 0 chr12 124990284 124990592 -18795863 - AluY SINE Alu -3 308 1 402 293 141 26 chr12 124990592 124990668 -18795787 - L2 LINE L2 -117 3196 3083 205 311 156 8 chr12 124990685 124990807 -18795648 - MIR SINE MIR -57 205 66 2482 195 11 13 chr12 124990845 124991369 -18795086 - MER74A LTR ERVL -35 523 1 210 276 0 115 chr12 124992046 124992133 -18794322 + L2 LINE L2 3237 3313 0 732 138 0 0 chr12 124992140 124992270 -18794185 + (TGGA)n Simple_repeat Simple_repeat 1 130 0 884 155 0 6 chr12 124992316 124992497 -18793958 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 730 267 94 30 chr12 124992879 124993209 -18793246 + L1ME4a LINE L1 5378 5728 -393 202 189 0 0 chr12 124993263 124993300 -18793155 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 285 208 0 0 chr12 124993300 124993353 -18793102 - L2 LINE L2 0 3313 3261 353 261 22 94 chr12 124993369 124993455 -18793000 + L1ME4a LINE L1 5762 5836 -285 2142 154 0 0 chr12 124993455 124993767 -18792688 - AluSx SINE Alu 0 312 1 353 261 22 94 chr12 124993767 124993818 -18792637 + L1ME4a LINE L1 5836 5889 -232 1957 119 0 4 chr12 124993861 124994130 -18792325 + AluSx SINE Alu 30 297 -15 305 175 63 16 chr12 124994307 124994370 -18792085 + L1ME4a LINE L1 6055 6120 -1 188 300 17 33 chr12 124994433 124994493 -18791962 - L2 LINE L2 -14 3258 3200 256 266 295 0 chr12 124994843 124995016 -18791439 + Charlie8 DNA MER1_type 107 1428 -989 266 271 53 45 chr12 124995034 124995167 -18791288 - MIR SINE MIR -119 143 10 355 336 0 17 chr12 124995460 124995576 -18790879 - MIR SINE MIR -80 182 69 1893 105 19 15 chr12 124996855 124997121 -18789334 + AluSx SINE Alu 24 290 -22 375 277 173 25 chr12 124997169 124997371 -18789084 + MIR SINE MIR 8 239 -23 215 240 40 0 chr12 124997489 124997539 -18788916 + MIR SINE MIR 39 90 -118 263 313 9 36 chr12 124997607 124997719 -18788736 + MIR SINE MIR 112 220 -42 756 125 23 31 chr12 124997730 124997858 -18788597 + FLAM_C SINE Alu 2 128 -15 28 0 0 0 chr12 124997858 124997886 -18788569 + AT_rich Low_complexity Low_complexity 1 28 0 403 262 97 0 chr12 124998432 124998535 -18787920 + MER81 DNA DNA 1 113 -1 208 255 0 0 chr12 124999055 124999106 -18787349 - MIR3 SINE MIR -5 203 153 433 280 17 0 chr12 124999106 124999224 -18787231 - MER117 DNA MER1_type 0 197 78 312 260 63 24 chr12 124999348 124999371 -18787084 - MIR SINE MIR -28 234 213 1064 146 29 121 chr12 124999371 124999399 -18787056 - MER20 DNA MER1_type 0 219 190 2295 116 3 0 chr12 124999399 124999700 -18786755 - AluSx SINE Alu -10 302 1 1064 146 29 121 chr12 124999700 124999910 -18786545 - MER20 DNA MER1_type -29 190 3 312 260 63 24 chr12 124999910 125000013 -18786442 - MIR SINE MIR -49 213 103 195 222 32 48 chr12 125000725 125000788 -18785667 + L3 LINE CR1 1419 1480 -97 213 80 40 20 chr12 125001094 125001144 -18785311 + T-rich Low_complexity Low_complexity 1 51 0 358 287 13 53 chr12 125001215 125001365 -18785090 - MER5A DNA MER1_type -39 150 7 1090 134 14 74 chr12 125002095 125002312 -18784143 - L1MC1 LINE L1 0 6333 6130 2140 119 0 10 chr12 125002315 125002610 -18783845 - AluSx SINE Alu -20 292 1 760 198 38 19 chr12 125002612 125002824 -18783631 - L1MD3 LINE L1 -10 7985 7770 510 251 163 15 chr12 125002838 125003041 -18783414 + MIR SINE MIR 30 262 0 214 171 0 0 chr12 125003154 125003189 -18783266 + A-rich Low_complexity Low_complexity 2 36 0 2477 71 0 0 chr12 125003282 125003579 -18782876 - AluY SINE Alu -14 297 1 236 175 0 0 chr12 125003867 125003907 -18782548 - MIR SINE MIR -133 129 90 686 163 106 38 chr12 125003947 125004027 -18782428 - MER45A DNA AcHobo -1403 178 105 2308 117 0 0 chr12 125004027 125004334 -18782121 + AluSx SINE Alu 1 307 -5 686 163 106 38 chr12 125004334 125004413 -18782042 - MER45A DNA AcHobo -1476 105 8 234 341 74 23 chr12 125004444 125004661 -18781794 - L2 LINE L2 -1154 2160 1933 2330 83 7 0 chr12 125004698 125004988 -18781467 + AluSc SINE Alu 10 301 -8 608 161 0 42 chr12 125004988 125005106 -18781349 + L1PB3 LINE L1 5680 5792 -362 275 154 19 48 chr12 125005126 125005230 -18781225 + (TA)n Simple_repeat Simple_repeat 2 102 0 2230 146 30 0 chr12 125005241 125005603 -18780852 + L1PB3 LINE L1 5782 6154 0 941 130 130 35 chr12 125006231 125006431 -18780024 - MER20 DNA MER1_type 0 219 1 1775 82 9 4 chr12 125006493 125006726 -18779729 - AluSq SINE Alu -15 298 65 891 158 7 7 chr12 125006846 125006992 -18779463 + AluSg/x SINE Alu 147 292 -18 1908 155 7 10 chr12 125007131 125007428 -18779027 - AluSx SINE Alu -16 296 1 1691 164 10 14 chr12 125007438 125007731 -18778724 - AluJo SINE Alu -20 292 1 206 194 0 0 chr12 125007737 125007773 -18778682 - MIR SINE MIR -10 252 217 366 164 33 0 chr12 125007879 125007940 -18778515 - MER91B DNA MER1_type -127 63 1 1786 130 53 11 chr12 125008477 125008762 -18777693 + AluJo SINE Alu 1 297 -15 350 240 39 19 chr12 125009576 125009680 -18776775 - MIR SINE MIR -65 143 38 2041 120 32 0 chr12 125009694 125009977 -18776478 + AluSx SINE Alu 5 296 -16 4196 81 24 0 chr12 125010032 125010573 -18775882 + MER41A LTR ERV1 1 554 0 262 340 29 29 chr12 125010636 125010739 -18775716 + MIR SINE MIR 47 149 -113 2399 113 0 0 chr12 125010789 125011099 -18775356 + AluSq SINE Alu 1 310 -3 2193 109 31 0 chr12 125011112 125011235 -18775220 + AluSp SINE Alu 1 119 -194 207 69 0 0 chr12 125011235 125011264 -18775191 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2193 109 31 0 chr12 125011264 125011433 -18775022 + AluSp SINE Alu 119 302 -11 198 71 0 0 chr12 125011489 125011517 -18774938 + (A)n Simple_repeat Simple_repeat 1 28 0 1017 70 0 0 chr12 125011997 125012153 -18774302 + L1PA5 LINE L1 6026 6181 0 1502 155 3 102 chr12 125012214 125012423 -18774032 - AluJo SINE Alu 0 302 137 2313 107 7 0 chr12 125012423 125012721 -18773734 + AluSq SINE Alu 1 300 -13 1502 155 3 102 chr12 125012721 125012846 -18773609 - AluJo SINE Alu -165 137 1 315 246 98 57 chr12 125013255 125013377 -18773078 + L2 LINE L2 3170 3296 -17 1225 243 146 17 chr12 125013911 125014377 -18772078 + MLT1H1 LTR MaLR 30 555 0 2515 71 0 0 chr12 125014476 125014787 -18771668 - AluY SINE Alu 0 311 1 189 0 0 0 chr12 125014797 125014818 -18771637 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2005 232 92 23 chr12 125014840 125015482 -18770973 + L1MC4 LINE L1 7357 8042 0 1775 176 0 10 chr12 125015490 125015792 -18770663 + AluJo SINE Alu 1 299 -13 2536 71 0 3 chr12 125016869 125017179 -18769276 - AluY SINE Alu -2 309 1 299 234 91 103 chr12 125017274 125017380 -18769075 + MIR SINE MIR 49 155 -107 2108 117 4 4 chr12 125017380 125017700 -18768755 + AluSx SINE Alu 1 320 0 299 234 91 103 chr12 125017700 125017767 -18768688 + MIR SINE MIR 155 221 -41 614 201 149 0 chr12 125017815 125017949 -18768506 - MIR SINE MIR -105 157 4 188 263 0 0 chr12 125017956 125017994 -18768461 + MIR SINE MIR 225 262 0 742 254 29 0 chr12 125017998 125018171 -18768284 + MER45A DNA AcHobo 1 178 0 237 277 0 72 chr12 125018843 125018926 -18767529 - L2 LINE L2 -12 3260 3184 2232 122 7 10 chr12 125019061 125019343 -18767112 + AluSx SINE Alu 1 283 -29 240 35 0 0 chr12 125019343 125019372 -18767083 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 2232 122 7 10 chr12 125019372 125019392 -18767063 + AluSx SINE Alu 283 302 -10 2205 194 20 86 chr12 125019393 125020154 -18766301 - L1MB7 LINE L1 -61 6122 5445 2488 62 3 10 chr12 125020267 125020572 -18765883 - AluY SINE Alu -8 303 1 369 275 18 9 chr12 125020877 125020986 -18765469 - MLT1I LTR MaLR -299 110 1 1990 142 7 0 chr12 125021051 125021347 -18765108 + AluSq SINE Alu 1 298 -15 294 319 106 0 chr12 125021354 125021448 -18765007 - MIR SINE MIR -10 252 149 316 280 0 20 chr12 125021487 125021587 -18764868 - MLT1L LTR MaLR -2 613 516 1665 163 33 53 chr12 125021588 125021889 -18764566 + AluJo SINE Alu 1 295 -17 2267 92 0 0 chr12 125021896 125022217 -18764238 + AluSx SINE Alu 1 321 0 278 248 184 0 chr12 125022390 125022499 -18763956 - MLT1L LTR MaLR -333 282 154 1909 124 34 17 chr12 125022697 125022988 -18763467 - AluJb SINE Alu -16 296 1 2132 112 7 0 chr12 125023530 125023817 -18762638 + AluSx SINE Alu 1 289 -23 683 189 0 0 chr12 125024059 125024170 -18762285 + FLAM_C SINE Alu 3 113 -30 212 252 17 92 chr12 125024244 125024269 -18762186 + L2 LINE L2 3203 3228 -85 2092 143 0 0 chr12 125024269 125024563 -18761892 - AluSx SINE Alu -18 294 1 212 252 17 92 chr12 125024563 125024584 -18761871 + L2 LINE L2 3228 3249 -64 1391 210 104 24 chr12 125024584 125024922 -18761533 + MLT1A1 LTR MaLR 1 365 0 212 252 17 92 chr12 125024922 125024993 -18761462 + L2 LINE L2 3249 3312 -1 2329 107 3 0 chr12 125025005 125025313 -18761142 + AluSp SINE Alu 3 311 -2 224 338 13 19 chr12 125025316 125025470 -18760985 + GA-rich Low_complexity Low_complexity 2 154 0 1678 209 48 37 chr12 125025947 125026028 -18760427 + MLT1C LTR MaLR 8 87 -380 2152 119 40 59 chr12 125026028 125026399 -18760056 + THE1B LTR MaLR 1 364 0 1678 209 48 37 chr12 125026399 125026772 -18759683 + MLT1C LTR MaLR 87 467 0 1951 148 3 3 chr12 125027128 125027426 -18759029 - AluJo SINE Alu -14 298 1 279 349 68 7 chr12 125027443 125027589 -18758866 + MIR SINE MIR 67 221 -41 421 232 189 0 chr12 125027803 125027898 -18758557 - MER81 DNA DNA 0 114 2 258 200 27 93 chr12 125027950 125028025 -18758430 - L2 LINE L2 0 3313 3244 246 309 25 12 chr12 125028060 125028141 -18758314 - L2 LINE L2 0 3272 3191 2313 97 0 3 chr12 125028173 125028462 -18757993 + AluSg SINE Alu 1 288 -22 1075 97 110 0 chr12 125028462 125028607 -18757848 + AluSq SINE Alu 134 294 -19 186 385 51 17 chr12 125029366 125029483 -18756972 - L2 LINE L2 -15 3257 3137 189 0 0 0 chr12 125029488 125029509 -18756946 + (CA)n Simple_repeat Simple_repeat 2 22 0 2274 121 0 0 chr12 125029572 125029870 -18756585 - AluSx SINE Alu -14 298 1 2128 142 0 3 chr12 125030500 125030809 -18755646 + AluSx SINE Alu 1 308 -4 515 299 188 20 chr12 125030819 125031117 -18755338 + MLT1K LTR MaLR 136 483 -105 1405 180 232 35 chr12 125031117 125031544 -18754911 + MLT2B1 LTR ERVL 3 513 -7 369 260 0 19 chr12 125031551 125031655 -18754800 + MLT1K LTR MaLR 477 578 -10 272 264 0 0 chr12 125031676 125031729 -18754726 + MER58A DNA MER1_type 2 54 -170 3078 172 68 76 chr12 125031747 125032549 -18753906 - L1MB8 LINE L1 0 6178 5371 2390 94 7 0 chr12 125032549 125032856 -18753599 - AluSp SINE Alu -4 309 1 3078 172 68 76 chr12 125032856 125032873 -18753582 - L1MB8 LINE L1 -807 5371 5537 2167 110 24 0 chr12 125032873 125033165 -18753290 - AluSq SINE Alu -12 301 3 3078 172 68 76 chr12 125033165 125033258 -18753197 - L1MB8 LINE L1 -640 5538 5446 784 171 21 62 chr12 125033258 125033334 -18753121 + MER58A DNA MER1_type 40 118 -2302 2386 64 7 3 chr12 125033334 125033631 -18752824 - AluY SINE Alu -13 298 1 2346 89 13 20 chr12 125033634 125033938 -18752517 - AluSg SINE Alu -8 302 1 784 171 21 62 chr12 125033938 125034050 -18752405 + MER58A DNA MER1_type 120 224 0 1471 198 0 85 chr12 125034140 125034468 -18751987 - AluJb SINE Alu -12 300 1 188 305 85 0 chr12 125034477 125034536 -18751919 + MIR SINE MIR 106 169 -93 2097 131 0 0 chr12 125034536 125034826 -18751629 + AluSx SINE Alu 1 290 -22 2206 113 0 10 chr12 125035111 125035404 -18751051 + AluSg SINE Alu 12 301 -9 545 299 38 22 chr12 125035629 125035813 -18750642 + MIR SINE MIR 22 208 -54 378 265 29 0 chr12 125035887 125035989 -18750466 - MIR3 SINE MIR -40 168 64 2211 124 3 13 chr12 125036083 125036397 -18750058 - AluSq SINE Alu -2 311 1 489 318 101 19 chr12 125036903 125037221 -18749234 + L2 LINE L2 2969 3312 -1 220 234 0 0 chr12 125037666 125037713 -18748742 + T-rich Low_complexity Low_complexity 1 47 0 32 26 0 0 chr12 125037723 125037762 -18748693 + AT_rich Low_complexity Low_complexity 1 39 0 269 359 0 6 chr12 125038006 125038176 -18748279 + CT-rich Low_complexity Low_complexity 1 169 0 878 161 62 94 chr12 125038769 125038993 -18747462 - MER20 DNA MER1_type -2 217 1 186 43 0 0 chr12 125039091 125039114 -18747341 + (TAG)n Simple_repeat Simple_repeat 1 23 0 234 282 0 26 chr12 125039122 125039200 -18747255 - MIR SINE MIR -1 261 186 208 235 59 29 chr12 125039202 125039270 -18747185 + MIR SINE MIR 153 222 -40 190 326 53 0 chr12 125039302 125039397 -18747058 + L2 LINE L2 2890 2989 -283 1763 120 4 23 chr12 125039576 125039835 -18746620 - AluSq SINE Alu -1 312 59 314 287 0 0 chr12 125040277 125040371 -18746084 + MLT1K LTR MaLR 151 244 -344 240 111 0 0 chr12 125041301 125041337 -18745118 + (CA)n Simple_repeat Simple_repeat 2 37 0 1804 158 7 17 chr12 125042273 125042408 -18744047 + AluJo SINE Alu 1 136 -176 2185 117 0 0 chr12 125042408 125042698 -18743757 + AluSx SINE Alu 1 290 -22 1804 158 7 17 chr12 125042698 125042854 -18743601 + AluJo SINE Alu 136 289 -23 230 300 160 10 chr12 125042918 125043018 -18743437 - MIR SINE MIR -61 147 33 336 218 58 0 chr12 125043367 125043454 -18743001 - MER45 DNA AcHobo -8 1573 1482 2252 97 3 29 chr12 125043456 125043767 -18742688 + AluSx SINE Alu 1 303 -9 2202 86 14 4 chr12 125043788 125044094 -18742361 + AluY SINE Alu 1 309 0 1915 179 0 0 chr12 125044094 125044390 -18742065 + AluJb SINE Alu 7 302 -10 598 107 80 0 chr12 125044393 125044505 -18741950 + Charlie5 DNA MER1_type 2456 2576 -36 2067 126 0 13 chr12 125045062 125045364 -18741091 + AluJb SINE Alu 1 298 -14 370 283 115 0 chr12 125045405 125045518 -18740937 - MIR SINE MIR -29 233 108 2085 126 17 0 chr12 125046141 125046442 -18740013 - AluSp SINE Alu -7 306 1 1747 192 0 3 chr12 125046707 125047004 -18739451 + AluJo SINE Alu 1 296 -16 221 276 0 82 chr12 125047044 125047142 -18739313 + MIR SINE MIR 56 145 -117 2462 87 7 0 chr12 125048409 125048708 -18737747 + AluSx SINE Alu 1 301 -11 452 285 70 47 chr12 125048924 125048981 -18737474 + MER5A DNA MER1_type 11 65 -124 913 130 0 0 chr12 125048981 125049112 -18737343 + FLAM_C SINE Alu 1 131 -2 452 285 70 47 chr12 125049112 125049226 -18737229 + MER5A DNA MER1_type 65 186 -3 206 315 105 63 chr12 125049226 125049361 -18737094 + MIR3 SINE MIR 30 170 -38 1675 157 47 68 chr12 125049407 125049716 -18736739 + L1MB3 LINE L1 5725 6039 -144 2121 115 4 4 chr12 125049716 125049994 -18736461 + AluSx SINE Alu 1 278 -34 219 69 0 0 chr12 125049994 125050023 -18736432 + (CA)n Simple_repeat Simple_repeat 2 30 0 1675 157 47 68 chr12 125050023 125050121 -18736334 + L1MB3 LINE L1 6037 6124 -59 1784 147 16 44 chr12 125050182 125050502 -18735953 + AluJo SINE Alu 2 312 0 25 31 0 0 chr12 125050889 125050921 -18735534 + AT_rich Low_complexity Low_complexity 1 32 0 311 307 9 12 chr12 125051830 125051945 -18734510 - MIR SINE MIR -33 175 57 442 235 82 8 chr12 125052641 125052783 -18733672 - MIR SINE MIR -62 146 40 211 256 192 0 chr12 125053174 125053252 -18733203 + MER5A DNA MER1_type 2 94 -95 279 79 0 0 chr12 125053264 125053302 -18733153 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 2048 108 3 28 chr12 125053324 125053611 -18732844 - AluSx SINE Alu -32 280 1 837 274 87 57 chr12 125053792 125053999 -18732456 - L2 LINE L2 -1 3312 3113 1081 169 63 5 chr12 125053999 125054206 -18732249 + MER20 DNA MER1_type 1 219 0 837 274 87 57 chr12 125054206 125054634 -18731821 - L2 LINE L2 -200 3113 2542 2390 94 3 0 chr12 125054634 125054941 -18731514 + AluSx SINE Alu 1 308 -4 837 274 87 57 chr12 125054941 125055022 -18731433 - L2 LINE L2 -771 2542 2465 1015 184 22 40 chr12 125055106 125055329 -18731126 + MER20 DNA MER1_type 1 219 0 186 71 0 0 chr12 125055790 125055818 -18730637 + (CCA)n Simple_repeat Simple_repeat 1 28 0 1066 227 27 9 chr12 125056349 125056569 -18729886 + MER58A DNA MER1_type 1 224 0 826 150 0 23 chr12 125056739 125056872 -18729583 - FLAM_C SINE Alu -3 130 1 3972 144 19 40 chr12 125057232 125057821 -18728634 - MER50 LTR ERV1 -17 717 117 201 39 0 0 chr12 125057821 125057847 -18728608 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3972 144 19 40 chr12 125057847 125057858 -18728597 - MER50 LTR ERV1 -617 117 107 2138 102 0 7 chr12 125057858 125058133 -18728322 - AluSx SINE Alu -39 273 1 3972 144 19 40 chr12 125058133 125058262 -18728193 - MER50 LTR ERV1 -627 107 2 21 0 0 0 chr12 125058298 125058319 -18728136 + AT_rich Low_complexity Low_complexity 1 21 0 1772 146 50 7 chr12 125058324 125058604 -18727851 + AluSg SINE Alu 1 292 -18 189 0 0 0 chr12 125058605 125058626 -18727829 + (TA)n Simple_repeat Simple_repeat 2 22 0 3370 179 13 48 chr12 125058628 125059372 -18727083 - L1MB5 LINE L1 -12 6162 5445 2061 91 3 62 chr12 125059556 125059865 -18726590 - AluSx SINE Alu -21 291 1 252 122 0 0 chr12 125059878 125059919 -18726536 + (GA)n Simple_repeat Simple_repeat 2 42 0 507 85 45 40 chr12 125059922 125060099 -18726356 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 4849 130 41 7 chr12 125060119 125060461 -18725994 - L1PB4 LINE L1 -10 6146 5817 351 0 0 0 chr12 125060461 125060500 -18725955 + (TG)n Simple_repeat Simple_repeat 1 39 0 4849 130 41 7 chr12 125060500 125061114 -18725341 - L1PB4 LINE L1 -339 5817 5157 659 133 0 0 chr12 125061345 125061443 -18725012 - AluSg/x SINE Alu 0 309 212 1452 174 11 7 chr12 125061459 125061729 -18724726 - MER66B LTR ERV1 -215 271 1 249 250 80 45 chr12 125061761 125061873 -18724582 + LTR16A LTR ERVL 319 434 -16 289 326 37 48 chr12 125062197 125062384 -18724071 + L2 LINE L2 2877 3061 -211 391 215 177 67 chr12 125062384 125062593 -18723862 - ORSL DNA AcHobo -19 256 25 352 278 28 0 chr12 125062728 125062836 -18723619 + L2 LINE L2 3201 3311 -2 1691 165 3 44 chr12 125062892 125063207 -18723248 - AluJo SINE Alu -10 302 1 2157 129 0 0 chr12 125064057 125064337 -18722118 + AluSx SINE Alu 1 280 -32 926 170 7 0 chr12 125064361 125064508 -18721947 + FRAM SINE Alu 13 160 -16 809 148 7 22 chr12 125064521 125064656 -18721799 + FLAM_C SINE Alu 1 133 0 1564 137 54 126 chr12 125065169 125065555 -18720900 - L1MB8 LINE L1 0 6178 5830 2800 135 9 11 chr12 125065555 125066006 -18720449 - L1PA16 LINE L1 0 6166 5717 1564 137 54 126 chr12 125066006 125066080 -18720375 - L1MB8 LINE L1 -348 5830 5752 180 0 0 0 chr12 125066088 125066108 -18720347 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 1215 165 70 18 chr12 125066109 125066218 -18720237 - L1MA4 LINE L1 0 6300 6198 2221 136 0 3 chr12 125066218 125066528 -18719927 - AluSx SINE Alu -3 309 1 1215 165 70 18 chr12 125066528 125066703 -18719752 - L1MA4 LINE L1 -102 6198 6001 2035 164 37 32 chr12 125066707 125067077 -18719378 - L1MB8 LINE L1 -575 5603 5236 2109 132 0 28 chr12 125067077 125067396 -18719059 - AluJb SINE Alu -2 310 1 2035 164 37 32 chr12 125067396 125067579 -18718876 - L1MB8 LINE L1 -942 5236 5055 1512 146 125 25 chr12 125067579 125067859 -18718596 - AluJo SINE Alu -4 308 1 2035 164 37 32 chr12 125067859 125068087 -18718368 - L1MB8 LINE L1 -1123 5055 4824 894 143 112 0 chr12 125068065 125068192 -18718263 - L1MA4 LINE L1 -690 5622 5472 * 234 0 0 0 chr12 125068192 125068218 -18718237 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 894 143 112 0 chr12 125068218 125068251 -18718204 - L1MA4 LINE L1 -840 5472 5444 3439 178 34 23 chr12 125068251 125068948 -18717507 + L1MA10 LINE L1 5629 6333 -1 2048 144 17 3 chr12 125068958 125069249 -18717206 + AluJo SINE Alu 1 295 -17 2196 99 3 0 chr12 125069504 125069827 -18716628 - AluSx SINE Alu 0 324 1 337 273 123 13 chr12 125069857 125070011 -18716444 + Charlie8 DNA MER1_type 1 171 -2246 416 69 0 0 chr12 125070223 125070281 -18716174 + Alu SINE Alu 2 59 -254 896 293 109 19 chr12 125071334 125071853 -18714602 + L1MC4a LINE L1 5257 5835 -1973 2333 103 7 0 chr12 125071853 125072154 -18714301 + AluSc SINE Alu 1 303 -6 896 293 109 19 chr12 125072154 125072211 -18714244 + L1MC4a LINE L1 5835 5885 -1923 184 208 104 52 chr12 125072338 125072415 -18714040 + MIR SINE MIR 54 134 -74 430 280 36 76 chr12 125072536 125072715 -18713740 + MIR SINE MIR 54 229 -33 2656 142 21 7 chr12 125072715 125073137 -18713318 + MSTC LTR MaLR 1 428 0 430 280 36 76 chr12 125073137 125073163 -18713292 + MIR SINE MIR 229 254 -8 2248 98 0 7 chr12 125073443 125073729 -18712726 + AluSx SINE Alu 1 284 -28 375 192 0 0 chr12 125073732 125073810 -18712645 + GA-rich Low_complexity Low_complexity 3 80 0 235 281 228 35 chr12 125074057 125074162 -18712293 + L2 LINE L2 3134 3264 -8 2228 136 0 0 chr12 125074162 125074473 -18711982 - AluSx SINE Alu -1 311 11 1496 110 0 0 chr12 125074837 125075037 -18711418 + AluSc SINE Alu 89 288 -21 2014 133 0 9 chr12 125076015 125076330 -18710125 - AluSx SINE Alu 0 312 1 370 315 31 44 chr12 125076330 125076540 -18709915 - MIR SINE MIR -58 204 2 867 154 0 0 chr12 125076570 125076713 -18709742 - FLAM_C SINE Alu 0 143 1 1791 159 10 126 chr12 125076725 125077210 -18709245 - L1MB7 LINE L1 -77 6107 5679 2119 119 0 3 chr12 125077382 125077685 -18708770 + AluJb SINE Alu 1 302 -10 405 0 0 0 chr12 125077807 125077852 -18708603 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1897 125 4 0 chr12 125077855 125078136 -18708319 - AluSq SINE Alu -31 282 1 710 95 0 9 chr12 125078601 125078706 -18707749 + AluSg/x SINE Alu 204 307 -3 1984 136 10 0 chr12 125079179 125079481 -18706974 + AluSx SINE Alu 3 307 -5 3295 153 38 37 chr12 125079484 125080049 -18706406 + L1MB7 LINE L1 5134 5696 -488 2105 101 13 28 chr12 125080049 125080366 -18706089 + AluSx SINE Alu 1 312 0 3295 153 38 37 chr12 125080366 125080572 -18705883 + L1MB7 LINE L1 5696 5900 -284 1221 126 0 0 chr12 125080584 125080759 -18705696 + AluSq SINE Alu 107 281 -32 225 0 0 0 chr12 125080759 125080784 -18705671 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 577 106 115 0 chr12 125080785 125080889 -18705566 + L1MB7 LINE L1 6060 6175 -9 354 249 117 33 chr12 125081168 125081381 -18705074 + L1ME4a LINE L1 5888 6118 -3 1793 146 3 10 chr12 125081404 125081698 -18704757 + AluJb SINE Alu 21 312 0 206 279 13 51 chr12 125082389 125082468 -18703987 + L2 LINE L2 3234 3309 -4 1099 189 9 19 chr12 125082523 125082735 -18703720 - MER20 DNA MER1_type 0 219 10 1668 185 0 13 chr12 125082750 125083064 -18703391 + AluJo SINE Alu 2 311 -1 210 294 82 0 chr12 125083171 125083256 -18703199 - MIR3 SINE MIR -6 202 111 2043 106 20 3 chr12 125083454 125083747 -18702708 + AluSx SINE Alu 1 298 -14 1649 164 0 21 chr12 125083756 125084043 -18702412 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr12 125084045 125084072 -18702383 + (TC)n Simple_repeat Simple_repeat 1 27 0 187 200 0 0 chr12 125084137 125084167 -18702288 + L2 LINE L2 3228 3257 -15 315 319 71 16 chr12 125085590 125085772 -18700683 + L1ME4a LINE L1 5894 6085 -36 294 263 63 21 chr12 125086260 125086355 -18700100 - MIR3 SINE MIR -23 185 87 258 32 0 0 chr12 125086419 125086450 -18700005 + (CA)n Simple_repeat Simple_repeat 2 32 0 2292 57 3 10 chr12 125086664 125086960 -18699495 + AluY SINE Alu 1 294 -17 1830 128 4 4 chr12 125087046 125087327 -18699128 - AluJo SINE Alu -31 281 1 661 200 133 10 chr12 125088446 125088641 -18697814 - MER20 DNA MER1_type 0 219 1 243 252 58 86 chr12 125089042 125089181 -18697274 + L1MC/D LINE L1 5705 5839 -1969 378 206 93 9 chr12 125089517 125089624 -18696831 - MIR SINE MIR -80 182 67 2277 89 0 3 chr12 125089924 125090228 -18696227 + AluSx SINE Alu 2 304 -8 1122 109 6 0 chr12 125090485 125090641 -18695814 - AluSx SINE Alu -151 161 5 281 285 108 15 chr12 125091087 125091217 -18695238 + MIR3 SINE MIR 2 143 -65 203 159 45 23 chr12 125095381 125095425 -18691030 + GA-rich Low_complexity Low_complexity 5 49 0 206 371 62 0 chr12 125097843 125097940 -18688515 + MIR SINE MIR 39 141 -67 1712 103 153 4 chr12 125099846 125100107 -18686348 + AluSq SINE Alu 2 301 -2 417 274 96 14 chr12 125100230 125100376 -18686079 + MER5B DNA MER1_type 21 178 0 1316 194 89 8 chr12 125100510 125100757 -18685698 + Tigger7 DNA MER2_type 1 267 -2220 492 129 153 0 chr12 125100754 125100839 -18685616 + Tigger7 DNA MER2_type 2389 2486 -1 * 22 0 0 0 chr12 125100905 125100927 -18685528 + AT_rich Low_complexity Low_complexity 1 22 0 2421 54 0 3 chr12 125101015 125101313 -18685142 + AluY SINE Alu 1 297 -14 312 286 78 31 chr12 125101474 125101666 -18684789 - L1ME4a LINE L1 -223 5898 5698 422 234 299 0 chr12 125103015 125103246 -18683209 + L1ME4a LINE L1 5741 6040 -81 551 272 92 31 chr12 125103629 125103824 -18682631 + L2 LINE L2 3104 3310 -3 1529 207 73 65 chr12 125104286 125104794 -18681661 - Charlie1a DNA MER1_type 0 1455 944 2668 160 84 39 chr12 125104798 125105299 -18681156 + L1MB8 LINE L1 5557 6034 -144 2450 65 0 3 chr12 125105299 125105609 -18680846 - AluY SINE Alu -2 309 1 1988 120 20 0 chr12 125105612 125105912 -18680543 - AluSx SINE Alu -6 306 1 2668 160 84 39 chr12 125105912 125106001 -18680454 + L1MB8 LINE L1 6035 6178 0 3566 184 74 10 chr12 125106017 125106841 -18679614 - Charlie1a DNA MER1_type -510 945 5 411 223 141 39 chr12 125106844 125106871 -18679584 - MLT1I LTR MaLR -14 395 372 1406 198 3 40 chr12 125106871 125107195 -18679260 + AluJo SINE Alu 1 312 0 411 223 141 39 chr12 125107195 125107484 -18678971 - MLT1I LTR MaLR -37 372 2 375 256 37 43 chr12 125107520 125107684 -18678771 - Charlie8 DNA MER1_type -2151 266 104 859 152 0 0 chr12 125107702 125107834 -18678621 + AluJo/FLAM SINE Alu 1 132 -180 2198 107 3 0 chr12 125107834 125108143 -18678312 + AluSx SINE Alu 1 310 -2 3740 119 59 28 chr12 125108518 125108599 -18677856 + Tigger3(Golem) DNA MER2_type 2255 2332 -706 2113 78 14 7 chr12 125108599 125108892 -18677563 - AluY SINE Alu -16 295 1 3740 119 59 28 chr12 125108892 125109283 -18677172 + Tigger3(Golem) DNA MER2_type 2332 2821 -217 2135 119 0 0 chr12 125109283 125109585 -18676870 - AluSx SINE Alu -10 302 1 3740 119 59 28 chr12 125109585 125109809 -18676646 + Tigger3(Golem) DNA MER2_type 2821 3037 -1 506 327 107 28 chr12 125109958 125110276 -18676179 - L2 LINE L2 0 3313 2971 855 275 136 20 chr12 125110294 125110647 -18675808 - L2 LINE L2 -570 2744 2351 966 152 25 99 chr12 125110678 125110858 -18675597 + L1MB3 LINE L1 5959 6151 -32 2132 107 0 3 chr12 125110858 125111147 -18675308 + AluSx SINE Alu 1 288 -24 966 152 25 99 chr12 125111147 125111166 -18675289 + L1MB3 LINE L1 6151 6140 -43 2197 94 13 7 chr12 125111166 125111475 -18674980 + AluSp SINE Alu 1 311 -2 966 152 25 99 chr12 125111475 125111517 -18674938 + L1MB3 LINE L1 6139 6183 0 517 243 100 58 chr12 125111532 125111791 -18674664 - L2 LINE L2 -1007 2307 2038 291 270 87 17 chr12 125111982 125112097 -18674358 + MER94 DNA DNA 11 133 -1 627 191 22 26 chr12 125112714 125113130 -18673325 + GA-rich Low_complexity Low_complexity 1 414 0 852 174 0 0 chr12 125113693 125113825 -18672630 - FLAM_A SINE Alu 0 133 2 2043 133 0 0 chr12 125113926 125114226 -18672229 - AluSx SINE Alu -12 300 1 334 256 89 67 chr12 125114508 125114623 -18671832 + MIR SINE MIR 55 177 -85 1937 141 3 0 chr12 125114623 125114922 -18671533 + AluSx SINE Alu 1 300 -12 334 256 89 67 chr12 125114922 125114986 -18671469 + MIR SINE MIR 177 238 -24 516 262 0 24 chr12 125115143 125115269 -18671186 - MIR SINE MIR -63 145 23 189 147 0 0 chr12 125115619 125115653 -18670802 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2068 133 0 0 chr12 125115762 125116063 -18670392 - AluSx SINE Alu -11 301 1 609 123 0 0 chr12 125116067 125116148 -18670307 - AluS SINE Alu -230 82 2 429 169 56 22 chr12 125116272 125116361 -18670094 + MER103 DNA DNA 1 92 -74 321 318 27 18 chr12 125116367 125116477 -18669978 - L2 LINE L2 0 3272 3162 2051 105 3 0 chr12 125116553 125116839 -18669616 + AluSx SINE Alu 11 297 -15 554 257 7 33 chr12 125116839 125116985 -18669470 - MER5B DNA MER1_type -34 144 3 1982 91 12 56 chr12 125117198 125117517 -18668938 + AluSx SINE Alu 1 305 -7 402 257 38 0 chr12 125117581 125117686 -18668769 + MIR SINE MIR 118 226 -36 258 176 147 15 chr12 125117714 125117782 -18668673 + MIR SINE MIR 86 162 -100 2242 241 17 43 chr12 125117785 125118246 -18668209 + L1ME2 LINE L1 5583 6055 -279 198 0 0 0 chr12 125118246 125118268 -18668187 + (TA)n Simple_repeat Simple_repeat 2 23 0 1822 165 0 10 chr12 125118268 125118571 -18667884 - AluJb SINE Alu -12 300 1 2242 241 17 43 chr12 125118571 125118710 -18667745 + L1ME2 LINE L1 6053 6330 -4 488 307 42 14 chr12 125118746 125118961 -18667494 + L1ME LINE L1 5600 5820 -301 1313 206 19 70 chr12 125118968 125119206 -18667249 + L1MD3 LINE L1 7408 7622 -373 887 150 0 0 chr12 125119206 125119339 -18667116 - FLAM_C SINE Alu 0 133 1 1313 206 19 70 chr12 125119339 125119474 -18666981 + L1MD3 LINE L1 7622 7762 -233 1940 125 19 29 chr12 125119482 125119794 -18666661 - AluSx SINE Alu -3 309 1 350 23 0 0 chr12 125119947 125119990 -18666465 + L1PB1 LINE L1 5571 5613 -538 2149 77 0 37 chr12 125119994 125120292 -18666163 + AluY SINE Alu 5 291 -20 3927 87 13 6 chr12 125120306 125120856 -18665599 + L1PB1 LINE L1 5593 6146 -5 2227 89 0 0 chr12 125121122 125121414 -18665041 + AluSq SINE Alu 10 301 -12 1391 167 0 39 chr12 125122513 125122770 -18663685 + AluJo SINE Alu 21 267 -45 25 31 0 0 chr12 125122770 125122802 -18663653 + AT_rich Low_complexity Low_complexity 1 32 0 659 58 12 0 chr12 125122926 125123012 -18663443 - AluS SINE Alu -224 88 2 877 205 6 0 chr12 125123026 125123192 -18663263 + FRAM SINE Alu 1 162 -14 501 224 67 58 chr12 125123205 125123428 -18663027 + L1ME4a LINE L1 5710 5934 -187 498 297 137 58 chr12 125123486 125123699 -18662756 - MER102b DNA MER1_type -1087 341 94 768 160 32 0 chr12 125123699 125123824 -18662631 - FLAM_A SINE Alu -4 129 1 498 297 137 58 chr12 125123824 125123923 -18662532 - MER102b DNA MER1_type -1334 94 4 365 218 58 0 chr12 125123994 125124081 -18662374 + MIR3 SINE MIR 111 202 -6 255 319 133 26 chr12 125124235 125124348 -18662107 - L2 LINE L2 0 3272 3148 1926 152 0 46 chr12 125124528 125124851 -18661604 - AluJb SINE Alu -4 308 1 525 279 26 32 chr12 125125068 125125222 -18661233 - MIR SINE MIR -102 160 8 2109 96 3 24 chr12 125125361 125125652 -18660803 + AluSx SINE Alu 1 285 -27 1668 153 57 3 chr12 125126100 125126382 -18660073 + AluJo SINE Alu 1 297 -15 2066 121 41 0 chr12 125126486 125126656 -18659799 - AluSx SINE Alu -10 302 114 401 0 0 20 chr12 125126656 125126706 -18659749 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2066 121 41 0 chr12 125126706 125126825 -18659630 - AluSx SINE Alu -198 114 1 2364 108 0 6 chr12 125127012 125127326 -18659129 - AluSx SINE Alu 0 312 1 183 303 45 45 chr12 125127527 125127593 -18658862 + L2 LINE L2 3186 3251 -21 386 174 0 23 chr12 125127730 125127816 -18658639 + CT-rich Low_complexity Low_complexity 1 84 0 2204 147 0 0 chr12 125127828 125128134 -18658321 - AluSx SINE Alu -6 306 1 1801 178 3 0 chr12 125128177 125128464 -18657991 - AluJo SINE Alu -22 290 3 1110 295 45 15 chr12 125128523 125128923 -18657532 - L2 LINE L2 -93 3220 2809 1678 148 90 4 chr12 125128962 125129239 -18657216 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 125129557 125129581 -18656874 + AT_rich Low_complexity Low_complexity 1 24 0 2344 98 14 0 chr12 125130100 125130396 -18656059 + AluSx SINE Alu 1 300 -12 393 285 8 41 chr12 125130441 125130564 -18655891 + MIR SINE MIR 12 130 -132 3182 176 20 8 chr12 125130567 125130840 -18655615 + L1MB5 LINE L1 5542 5810 -364 2040 127 7 3 chr12 125130840 125131140 -18655315 + AluSx SINE Alu 1 301 -11 3182 176 20 8 chr12 125131140 125131457 -18654998 + L1MB5 LINE L1 5810 6139 -35 637 165 0 31 chr12 125131459 125131586 -18654869 - AluJb SINE Alu 0 312 190 2059 101 43 0 chr12 125131693 125131970 -18654485 - AluSq SINE Alu -24 289 1 328 363 23 29 chr12 125132159 125132227 -18654228 - MIR SINE MIR -68 194 127 1692 214 109 34 chr12 125132227 125132695 -18653760 - MLT1D LTR MaLR -2 503 1 328 363 23 29 chr12 125132695 125132797 -18653658 - MIR SINE MIR -135 127 25 298 341 78 6 chr12 125132838 125132989 -18653466 + MIR SINE MIR 35 201 -61 1648 171 16 33 chr12 125132989 125133293 -18653162 + AluJo SINE Alu 5 303 -9 298 341 78 6 chr12 125133293 125133308 -18653147 + MIR SINE MIR 201 213 -49 2465 90 3 0 chr12 125133476 125133786 -18652669 - AluSp SINE Alu -2 311 1 482 269 17 0 chr12 125133796 125133915 -18652540 - MIR SINE MIR -55 207 87 462 322 59 90 chr12 125133951 125134240 -18652215 + L2 LINE L2 2937 3216 -56 183 129 0 0 chr12 125134263 125134294 -18652161 + (TATG)n Simple_repeat Simple_repeat 4 34 0 246 283 0 0 chr12 125134295 125134348 -18652107 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 758 144 35 0 chr12 125134372 125134545 -18651910 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 557 213 24 0 chr12 125134567 125134736 -18651719 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 190 193 35 0 chr12 125134755 125134812 -18651643 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1957 117 64 0 chr12 125134973 125135254 -18651201 - AluSx SINE Alu -8 304 6 749 254 98 21 chr12 125135646 125135882 -18650573 + MIR SINE MIR 5 258 -4 326 316 26 0 chr12 125136459 125136576 -18649879 + L1MB7 LINE L1 5536 5655 -515 859 178 103 0 chr12 125136577 125136751 -18649704 + MER20 DNA MER1_type 1 192 -27 2351 138 8 94 chr12 125136751 125136806 -18649649 + MER65A LTR ERV1 1 59 -386 2360 113 3 0 chr12 125136806 125137115 -18649340 + AluSx SINE Alu 1 310 -2 2351 138 8 94 chr12 125137115 125137128 -18649327 + MER65A LTR ERV1 59 72 -373 1240 116 0 0 chr12 125137128 125137309 -18649146 + L1PA13 LINE L1 5983 6163 0 2351 138 8 94 chr12 125137309 125137726 -18648729 + MER65A LTR ERV1 72 445 0 2370 88 3 0 chr12 125137748 125138042 -18648413 + AluSp SINE Alu 1 295 -18 235 330 118 97 chr12 125141522 125141843 -18644612 - L2 LINE L2 -1 3271 2944 2203 170 38 11 chr12 125141845 125142321 -18644134 + L1MB7 LINE L1 5646 6134 -50 2041 128 0 21 chr12 125142328 125142655 -18643800 - AluSx SINE Alu 0 323 3 360 294 0 0 chr12 125142825 125142917 -18643538 + LTR33 LTR ERVL 68 159 -362 441 307 84 24 chr12 125142966 125143217 -18643238 + LTR33 LTR ERVL 256 521 0 1905 126 16 35 chr12 125143311 125143621 -18642834 - AluJo SINE Alu -8 304 1 555 222 0 0 chr12 125144298 125144397 -18642058 + AluJ/FLAM SINE Alu 2 100 -212 1900 144 43 10 chr12 125144879 125145178 -18641277 + AluSg SINE Alu 1 309 -1 446 144 54 24 chr12 125145567 125145734 -18640721 + GA-rich Low_complexity Low_complexity 3 174 0 23 0 0 0 chr12 125145885 125145908 -18640547 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 125145975 125145996 -18640459 + GC_rich Low_complexity Low_complexity 1 21 0 1160 270 130 11 chr12 125147298 125147818 -18638637 - L2 LINE L2 -1 3312 2731 1886 99 0 32 chr12 125147894 125148147 -18638308 + AluSx SINE Alu 1 245 -67 541 267 50 17 chr12 125148534 125148714 -18637741 - MIR3 SINE MIR -13 195 10 236 270 52 70 chr12 125148771 125148886 -18637569 + MIR SINE MIR 111 223 -39 1176 231 31 44 chr12 125149286 125149317 -18637138 - MER74B LTR ERVL -8 614 584 1661 169 44 39 chr12 125149317 125149629 -18636826 - MLT1A1 LTR MaLR 0 365 49 1954 158 7 7 chr12 125149629 125149920 -18636535 - AluJo SINE Alu -20 292 2 1661 169 44 39 chr12 125149920 125149969 -18636486 - MLT1A1 LTR MaLR -316 49 2 1176 231 31 44 chr12 125149969 125150232 -18636223 - MER74B LTR ERVL -38 584 324 1996 141 10 29 chr12 125150232 125150544 -18635911 - AluJb SINE Alu -6 306 1 1176 231 31 44 chr12 125150544 125150633 -18635822 - MER74B LTR ERVL -298 324 235 953 207 5 31 chr12 125150639 125150832 -18635623 + AluJb SINE Alu 9 196 -116 418 209 22 11 chr12 125151078 125151169 -18635286 + MER2 DNA MER2_type 1 92 -253 1925 139 4 0 chr12 125151264 125151570 -18634885 - AluJo SINE Alu 0 307 1 924 147 35 7 chr12 125151600 125151743 -18634712 + FRAM SINE Alu 1 147 -19 196 243 0 0 chr12 125151849 125151886 -18634569 - L2 LINE L2 -7 3306 3270 2377 95 3 0 chr12 125152123 125152427 -18634028 + AluSx SINE Alu 1 305 -7 1022 255 8 13 chr12 125153008 125153247 -18633208 + MIR SINE MIR 15 252 -10 2059 141 24 91 chr12 125153272 125153510 -18632945 - MLT1B LTR MaLR 0 390 190 1890 130 14 7 chr12 125153510 125153786 -18632669 - AluJo SINE Alu -26 286 9 2059 141 24 91 chr12 125153786 125153965 -18632490 - MLT1B LTR MaLR -200 190 1 464 296 29 23 chr12 125154635 125154807 -18631648 + MIR SINE MIR 71 243 -19 2261 124 3 0 chr12 125154914 125155220 -18631235 + AluSx SINE Alu 1 307 -5 741 200 0 0 chr12 125155359 125155489 -18630966 + FRAM SINE Alu 41 170 -6 9216 169 26 7 chr12 125155504 125159912 -18626543 + L1PBa LINE L1 6 4747 -2115 1103 163 29 118 chr12 125160093 125160175 -18626280 + MER58A DNA MER1_type 1 89 -2331 1884 168 0 7 chr12 125160175 125160455 -18626000 - AluJo SINE Alu -32 280 3 1103 163 29 118 chr12 125160455 125160618 -18625837 + MER58A DNA MER1_type 89 224 0 926 299 53 15 chr12 125160626 125160967 -18625488 - MLT1L LTR MaLR -100 515 162 1563 215 47 22 chr12 125160969 125161421 -18625034 + MLT1C LTR MaLR 1 467 0 425 37 0 0 chr12 125161430 125161484 -18624971 - MADE1 DNA Mariner 0 80 27 429 254 85 18 chr12 125161490 125161655 -18624800 + MLT1L LTR MaLR 188 363 -252 518 263 67 57 chr12 125161670 125161691 -18624764 - MLT1J LTR MaLR -4 507 488 1929 131 48 0 chr12 125161691 125161981 -18624474 + AluSx SINE Alu 1 304 -8 518 263 67 57 chr12 125161981 125162015 -18624440 - MLT1J LTR MaLR -23 488 456 2513 182 10 36 chr12 125162015 125162514 -18623941 - MER66B LTR ERV1 0 486 1 518 263 67 57 chr12 125162514 125162867 -18623588 - MLT1J LTR MaLR -55 456 32 2761 161 23 38 chr12 125162981 125163100 -18623355 - MER44D DNA MER2_type -1882 605 486 3049 104 29 2 chr12 125163100 125163552 -18622903 + MER4C LTR ERV1 1 464 -1 2761 161 23 38 chr12 125163552 125163881 -18622574 - MER44D DNA MER2_type -2001 486 154 324 0 0 0 chr12 125163881 125163917 -18622538 + (TA)n Simple_repeat Simple_repeat 2 37 0 2173 134 0 0 chr12 125163917 125164216 -18622239 - AluSq SINE Alu -14 299 1 2761 161 23 38 chr12 125164216 125164323 -18622132 - MER44D DNA MER2_type -2331 156 1 1069 198 79 8 chr12 125164323 125164575 -18621880 - L1MD2 LINE L1 -30 6329 6060 * 2735 122 6 39 chr12 125164568 125164937 -18621518 - L1MD2 LINE L1 -442 5800 5447 2225 106 0 3 chr12 125164937 125165256 -18621199 - AluSx SINE Alu 0 318 1 2735 122 6 39 chr12 125165256 125165353 -18621102 - L1MD2 LINE L1 -795 5447 5348 744 194 77 6 chr12 125165355 125165525 -18620930 + MER58A DNA MER1_type 43 224 0 583 257 42 35 chr12 125165651 125165912 -18620543 + L1ME3 LINE L1 5686 5948 -214 692 228 0 0 chr12 125166096 125166210 -18620245 + FLAM_A SINE Alu 1 114 -19 216 0 0 0 chr12 125166214 125166238 -18620217 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2368 99 3 0 chr12 125166291 125166593 -18619862 - AluSx SINE Alu -7 305 3 183 100 0 0 chr12 125167577 125167607 -18618848 + (T)n Simple_repeat Simple_repeat 1 30 0 2354 117 0 0 chr12 125167645 125167953 -18618502 - AluSx SINE Alu -4 308 1 282 152 0 0 chr12 125168433 125168479 -18617976 - L2 LINE L2 0 3313 3268 701 306 11 26 chr12 125168744 125169009 -18617446 - MIR SINE MIR 0 262 2 2310 102 0 0 chr12 125169977 125170270 -18616185 - AluSq SINE Alu -20 293 1 1000 252 124 82 chr12 125170304 125170648 -18615807 + MLT1K LTR MaLR 69 438 -150 1822 125 75 11 chr12 125170648 125170820 -18615635 - AluSx SINE Alu -13 299 101 513 0 0 0 chr12 125170820 125170877 -18615578 + (TG)n Simple_repeat Simple_repeat 2 58 0 1822 125 75 11 chr12 125170877 125170985 -18615470 - AluSx SINE Alu -211 101 1 1000 252 124 82 chr12 125170985 125171101 -18615354 + MLT1K LTR MaLR 438 548 -40 2086 120 23 10 chr12 125171101 125171402 -18615053 - AluJo SINE Alu -7 305 1 718 214 117 19 chr12 125171792 125171998 -18614457 + LTR16A1 LTR ERVL 232 457 0 235 206 196 31 chr12 125172927 125173024 -18613431 - MIR3 SINE MIR -92 116 4 255 125 0 0 chr12 125173919 125173959 -18612496 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2106 129 0 19 chr12 125173959 125174268 -18612187 - AluSx SINE Alu -9 303 1 593 206 0 69 chr12 125174360 125174491 -18611964 + FLAM_A SINE Alu 1 122 -11 558 280 11 37 chr12 125174510 125174699 -18611756 + MIR SINE MIR 28 211 -51 2413 104 0 16 chr12 125174792 125175109 -18611346 + AluSx SINE Alu 1 312 0 1955 130 3 53 chr12 125175254 125175576 -18610879 + AluJo SINE Alu 1 306 -6 2272 114 0 3 chr12 125175582 125175879 -18610576 + AluSx SINE Alu 3 298 -14 225 94 0 0 chr12 125175879 125175911 -18610544 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 221 186 0 23 chr12 125175913 125175956 -18610499 + GA-rich Low_complexity Low_complexity 2 43 0 1092 294 56 24 chr12 125176445 125176606 -18609849 - L2 LINE L2 -20 3293 3139 2082 96 7 4 chr12 125176606 125176918 -18609537 + AluSx SINE Alu 1 313 0 1092 294 56 24 chr12 125176918 125177390 -18609065 - L2 LINE L2 -174 3139 2631 718 266 0 20 chr12 125177540 125177624 -18608831 - MER58B DNA MER1_type -2079 341 257 1359 164 110 25 chr12 125177624 125177941 -18608514 - MER2 DNA MER2_type 0 344 1 718 266 0 20 chr12 125177941 125178059 -18608396 - MER58B DNA MER1_type -2163 257 143 2029 167 20 23 chr12 125178085 125178393 -18608062 - MER57A LTR ERV1 0 403 95 2315 78 0 17 chr12 125178393 125178689 -18607766 - AluSx SINE Alu -21 291 1 2029 167 20 23 chr12 125178689 125178775 -18607680 - MER57A LTR ERV1 -308 95 10 1596 159 43 0 chr12 125178778 125179035 -18607420 - AluJo SINE Alu -44 268 1 1992 127 7 0 chr12 125179113 125179389 -18607066 - AluSx SINE Alu -28 284 7 281 149 0 0 chr12 125179398 125179445 -18607010 - MER58B DNA MER1_type -239 102 56 2215 135 0 0 chr12 125179761 125180064 -18606391 + AluSx SINE Alu 1 303 -9 2179 137 0 0 chr12 125181620 125181919 -18604536 - AluSx SINE Alu -13 299 1 198 103 0 0 chr12 125182107 125182136 -18604319 + (A)n Simple_repeat Simple_repeat 1 29 0 354 259 44 15 chr12 125182136 125182271 -18604184 - MER103 DNA DNA -25 141 3 369 257 29 29 chr12 125182598 125182703 -18603752 - L2 LINE L2 -43 3270 3166 2146 109 0 17 chr12 125182711 125183004 -18603451 + AluSx SINE Alu 1 288 -24 252 228 40 59 chr12 125184653 125184754 -18601701 + MIR SINE MIR 43 141 -67 4335 118 154 24 chr12 125184850 125186223 -18600232 - pTR5 LTR ERV1 0 2438 743 421 340 39 39 chr12 125186392 125186651 -18599804 - MIR SINE MIR -1 261 3 1761 179 23 3 chr12 125186911 125187213 -18599242 + AluJo SINE Alu 1 308 -4 2441 88 3 0 chr12 125187348 125187654 -18598801 - AluSg1 SINE Alu -2 307 1 234 62 0 0 chr12 125187892 125187924 -18598531 + (GA)n Simple_repeat Simple_repeat 2 33 0 257 361 35 28 chr12 125188558 125188702 -18597753 + MIR SINE MIR 53 197 -65 232 347 31 20 chr12 125188839 125188937 -18597518 - MIR SINE MIR -155 107 9 405 258 76 15 chr12 125189602 125189734 -18596721 - L2 LINE L2 -1 3312 3173 310 313 22 30 chr12 125190141 125190275 -18596180 + MER5A DNA MER1_type 35 167 -22 212 364 67 6 chr12 125190284 125190449 -18596006 - L2 LINE L2 -530 2784 2610 2001 141 31 0 chr12 125190460 125190750 -18595705 + AluSx SINE Alu 1 299 -13 324 287 49 0 chr12 125191603 125191618 -18594837 - L1MA10 LINE L1 0 6334 6320 3317 183 65 53 chr12 125191618 125191726 -18594729 - L1ME1 LINE L1 -9 6157 6052 189 0 0 0 chr12 125191726 125191747 -18594708 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2431 99 0 0 chr12 125191749 125192051 -18594404 - AluSx SINE Alu -10 302 1 3317 183 65 53 chr12 125192051 125192496 -18593959 - L1ME1 LINE L1 -114 6052 5585 2312 125 0 3 chr12 125192496 125192809 -18593646 + AluJo SINE Alu 1 312 0 3317 183 65 53 chr12 125192809 125193081 -18593374 - L1ME1 LINE L1 -581 5585 5318 280 136 0 0 chr12 125193093 125193137 -18593318 + THE1C LTR MaLR 1 44 -331 679 118 0 132 chr12 125193147 125193283 -18593172 - AluSq/x SINE Alu -193 119 2 1088 205 57 4 chr12 125193284 125193547 -18592908 - MLT1C LTR MaLR -190 277 1 1817 162 16 29 chr12 125193683 125193997 -18592458 - AluJb SINE Alu -2 310 1 1147 196 19 5 chr12 125194408 125194622 -18591833 - MER20 DNA MER1_type -2 217 1 190 29 57 29 chr12 125194695 125194730 -18591725 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 2076 127 0 7 chr12 125194730 125195203 -18591252 - AluSx SINE Alu 0 491 21 2721 74 34 3 chr12 125195565 125195918 -18590537 - THE1B LTR MaLR 0 364 1 1433 185 82 11 chr12 125196105 125196386 -18590069 - AluJb SINE Alu -11 301 1 2592 154 27 23 chr12 125196701 125197100 -18589355 - L1MB5 LINE L1 -6 6168 5765 2210 135 138 5 chr12 125197100 125197478 -18588977 - MSTA LTR MaLR 0 428 1 2592 154 27 23 chr12 125197478 125197557 -18588898 - L1MB5 LINE L1 -409 5765 5688 894 191 6 0 chr12 125197567 125197724 -18588731 - FRAM SINE Alu -8 158 1 365 296 30 30 chr12 125197884 125198016 -18588439 + L2 LINE L2 2918 3049 -223 1937 144 14 3 chr12 125198325 125198617 -18587838 - AluJo SINE Alu -5 307 13 929 87 0 75 chr12 125199284 125199757 -18586698 + (GGGAA)n Simple_repeat Simple_repeat 1 437 0 1450 111 58 0 chr12 125199768 125199994 -18586461 + MER41A LTR ERV1 316 554 0 333 0 0 0 chr12 125200037 125200074 -18586381 + (CA)n Simple_repeat Simple_repeat 1 37 0 850 139 8 0 chr12 125200081 125200210 -18586245 - FRAM SINE Alu -46 130 1 254 193 42 17 chr12 125200292 125200411 -18586044 + (TG)n Simple_repeat Simple_repeat 1 122 0 234 265 154 34 chr12 125200884 125201001 -18585454 + MIR SINE MIR 80 210 -52 874 132 0 22 chr12 125201064 125201200 -18585255 + FLAM_C SINE Alu 1 133 0 669 237 148 61 chr12 125201316 125201802 -18584653 - MLT1G LTR MaLR -2 553 2 890 195 22 11 chr12 125201864 125202049 -18584406 - MER58A DNA MER1_type -3 221 35 432 259 60 65 chr12 125202050 125202092 -18584363 - MIR SINE MIR -6 256 215 1616 217 114 48 chr12 125202092 125202473 -18583982 - MLT1D LTR MaLR 0 505 86 2079 140 0 0 chr12 125202473 125202765 -18583690 + AluSx SINE Alu 1 292 -20 1616 217 114 48 chr12 125202765 125202857 -18583598 - MLT1D LTR MaLR -419 86 1 432 259 60 65 chr12 125202857 125202999 -18583456 - MIR SINE MIR -47 215 73 201 359 0 0 chr12 125203069 125203133 -18583322 + MIR SINE MIR 82 145 -63 253 79 26 0 chr12 125203857 125203895 -18582560 - MER117 DNA MER1_type -42 155 117 361 241 78 0 chr12 125204465 125204581 -18581874 + L1MC4 LINE L1 7918 8042 0 3646 170 40 15 chr12 125204666 125205354 -18581101 - L1MB7 LINE L1 0 6184 5476 2644 47 0 0 chr12 125205354 125205652 -18580803 - AluY SINE Alu -13 298 1 3646 170 40 15 chr12 125205652 125205691 -18580764 - L1MB7 LINE L1 -708 5476 5439 2296 218 55 20 chr12 125205925 125206522 -18579933 - MLT1E3 LTR MaLR 0 624 7 2297 96 3 23 chr12 125207609 125207912 -18578543 + AluSx SINE Alu 1 297 -15 616 268 79 26 chr12 125208073 125208263 -18578192 - MIR SINE MIR -62 200 1 2188 133 0 0 chr12 125208426 125208727 -18577728 + AluSx SINE Alu 5 305 -7 190 216 363 10 chr12 125208917 125209019 -18577436 + MIR SINE MIR 9 146 -116 2040 140 6 16 chr12 125209209 125209524 -18576931 + AluJo SINE Alu 1 312 0 222 182 121 45 chr12 125209895 125209961 -18576494 + L2 LINE L2 3243 3313 0 1893 167 0 13 chr12 125210357 125210657 -18575798 + AluJo SINE Alu 5 300 -12 2488 151 8 77 chr12 125211572 125211702 -18574753 - L1MB3 LINE L1 -2 6181 6044 2053 121 3 10 chr12 125211702 125212000 -18574455 - AluSx SINE Alu -14 298 3 2488 151 8 77 chr12 125212000 125212400 -18574055 - L1MB3 LINE L1 -139 6044 5688 1767 174 10 3 chr12 125212430 125212718 -18573737 + AluJb SINE Alu 1 290 -22 769 104 0 9 chr12 125212751 125212857 -18573598 - AluSq/x SINE Alu -207 105 1 579 234 0 8 chr12 125213027 125213155 -18573300 - MER94 DNA DNA 0 134 8 965 208 9 0 chr12 125213387 125213599 -18572856 + MER20 DNA MER1_type 1 214 -5 1425 141 0 23 chr12 125213880 125214100 -18572355 - AluJb SINE Alu -14 298 84 2129 127 0 0 chr12 125214152 125214443 -18572012 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr12 125215244 125215265 -18571190 + AT_rich Low_complexity Low_complexity 1 21 0 325 265 12 0 chr12 125215797 125215880 -18570575 + MER81 DNA DNA 2 85 -29 2030 145 3 3 chr12 125216139 125216436 -18570019 - AluJo SINE Alu -15 297 1 364 143 0 26 chr12 125217333 125217410 -18569045 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 932 227 96 0 chr12 125217422 125217642 -18568813 + MIR SINE MIR 15 255 -7 839 320 94 25 chr12 125217651 125218098 -18568357 - L2 LINE L2 0 3313 2836 1769 162 0 39 chr12 125218175 125218483 -18567972 + AluJo SINE Alu 1 296 -16 2096 112 21 0 chr12 125218485 125218829 -18567626 + AluSx SINE Alu 1 312 0 341 197 17 77 chr12 125218886 125219003 -18567452 - LTR67 LTR ERVL -13 544 435 1251 114 24 0 chr12 125219381 125219548 -18566907 - AluSx SINE Alu -141 171 1 1913 161 13 16 chr12 125219728 125220039 -18566416 - AluJo SINE Alu -2 310 1 1936 130 24 14 chr12 125220489 125220782 -18565673 + AluJo SINE Alu 11 306 -6 2338 103 0 3 chr12 125220897 125221199 -18565256 + AluSq SINE Alu 1 301 -12 1997 121 33 0 chr12 125221291 125221593 -18564862 + AluSx SINE Alu 1 311 0 981 234 159 15 chr12 125221766 125222099 -18564356 + MLT2F LTR ERVL 3 383 -280 753 189 21 68 chr12 125222110 125222171 -18564284 - MLT1A1 LTR MaLR 0 374 312 1799 145 30 0 chr12 125222171 125222440 -18564015 - AluJb SINE Alu -11 301 25 753 189 21 68 chr12 125222440 125222569 -18563886 - MLT1A1 LTR MaLR -62 312 193 338 146 0 42 chr12 125222600 125222696 -18563759 + (TTCTCC)n Simple_repeat Simple_repeat 3 94 0 2471 69 0 28 chr12 125222698 125223017 -18563438 - AluY SINE Alu -1 310 1 1840 171 13 3 chr12 125223022 125223320 -18563135 - AluJo SINE Alu -11 301 1 783 171 7 13 chr12 125223324 125223476 -18562979 - MLT1A1 LTR MaLR -214 151 1 1564 252 67 72 chr12 125223567 125224289 -18562166 + MER21B LTR ERV1 24 741 -122 701 179 68 63 chr12 125224293 125224483 -18561972 + MLT2F LTR ERVL 473 663 0 2283 127 0 0 chr12 125224884 125225183 -18561272 - AluSx SINE Alu -13 299 1 422 260 99 55 chr12 125225271 125225452 -18561003 - MIR SINE MIR -51 211 23 795 209 0 13 chr12 125226623 125226781 -18559674 - FRAM SINE Alu -1 175 20 214 200 0 40 chr12 125226792 125226867 -18559588 + CT-rich Low_complexity Low_complexity 1 72 0 * 420 285 45 6 chr12 125226864 125227043 -18559412 - L1MC/D LINE L1 -2012 5796 5611 1912 203 103 2 chr12 125227044 125227502 -18558953 - MLT1D LTR MaLR -1 504 1 381 292 60 60 chr12 125227502 125227691 -18558764 - L1MC/D LINE L1 -2193 5615 5424 1917 166 33 0 chr12 125227691 125227993 -18558462 - AluSx SINE Alu 0 312 1 381 292 60 60 chr12 125227993 125228135 -18558320 - L1MC/D LINE L1 -2383 5425 5284 466 252 19 0 chr12 125228182 125228289 -18558166 - MIR SINE MIR -103 159 51 347 291 113 7 chr12 125228457 125228598 -18557857 - MIR SINE MIR -101 161 6 2193 124 0 10 chr12 125228647 125228953 -18557502 + AluSx SINE Alu 1 303 -9 1407 147 29 103 chr12 125228955 125229267 -18557188 + AluJb SINE Alu 2 290 -12 547 255 78 31 chr12 125229560 125229752 -18556703 - MIR SINE MIR -34 228 28 403 248 80 16 chr12 125229927 125230052 -18556403 - MIR SINE MIR -71 191 59 1922 138 3 17 chr12 125230788 125231113 -18555342 + AluJo SINE Alu 1 321 0 231 36 0 0 chr12 125231727 125231755 -18554700 + (TA)n Simple_repeat Simple_repeat 2 29 0 460 167 0 105 chr12 125232258 125232339 -18554116 + MIR3 SINE MIR 69 136 -72 249 33 0 0 chr12 125232339 125232369 -18554086 + (CAT)n Simple_repeat Simple_repeat 1 30 0 460 167 0 105 chr12 125232369 125232401 -18554054 + MIR3 SINE MIR 136 170 -38 563 277 15 0 chr12 125232430 125232567 -18553888 - MIR SINE MIR -108 154 16 302 211 0 0 chr12 125232610 125232667 -18553788 - MIR SINE MIR -77 185 129 2346 119 0 0 chr12 125232715 125233051 -18553404 - AluSx SINE Alu 0 312 2 252 344 75 19 chr12 125233280 125233440 -18553015 - MIR SINE MIR -88 174 6 1018 145 0 19 chr12 125233636 125233795 -18552660 + FRAM SINE Alu 20 175 -1 278 182 0 15 chr12 125234124 125234190 -18552265 + MLT1D LTR MaLR 265 329 -176 1631 127 127 40 chr12 125234192 125234467 -18551988 + AluSx SINE Alu 3 301 -11 1948 126 36 0 chr12 125234607 125234884 -18551571 + AluSx SINE Alu 1 287 -25 1023 174 0 0 chr12 125234906 125235067 -18551388 + FRAM SINE Alu 1 161 -5 357 275 32 58 chr12 125235385 125235522 -18550933 + MIR3 SINE MIR 2 129 -99 854 165 8 0 chr12 125235532 125235665 -18550790 - AluJo SINE Alu -178 134 1 207 236 22 56 chr12 125235858 125235947 -18550508 - MIR SINE MIR 0 262 177 1392 131 0 15 chr12 125236050 125236256 -18550199 - AluSg/x SINE Alu -6 304 102 362 92 0 15 chr12 125236391 125236456 -18549999 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 249 361 0 24 chr12 125236471 125236554 -18549901 - L2 LINE L2 -58 3214 3134 201 74 0 0 chr12 125236714 125236741 -18549714 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1011 248 51 27 chr12 125237055 125237349 -18549106 + L1MC4a LINE L1 5350 5650 -2158 409 283 42 0 chr12 125237387 125237507 -18548948 - MIR SINE MIR -1 261 137 585 222 150 0 chr12 125237508 125237688 -18548767 + L1MC4a LINE L1 5691 5897 -1911 204 261 0 0 chr12 125237733 125237779 -18548676 + (TA)n Simple_repeat Simple_repeat 2 47 0 1480 171 3 37 chr12 125237815 125238114 -18548341 - L1MD3 LINE L1 0 7995 7707 198 333 21 32 chr12 125238397 125238490 -18547965 + L2 LINE L2 3097 3188 -84 384 212 15 106 chr12 125238736 125238806 -18547649 - MIR SINE MIR -51 211 157 2266 103 0 17 chr12 125238806 125239107 -18547348 - AluSx SINE Alu -16 296 1 384 212 15 106 chr12 125239107 125239168 -18547287 - MIR SINE MIR -105 157 92 527 183 92 0 chr12 125239239 125239359 -18547096 - MIR SINE MIR -116 146 16 541 261 33 0 chr12 125240004 125240157 -18546298 - MER117 DNA MER1_type -3 194 37 628 186 27 117 chr12 125240453 125240600 -18545855 + MIR SINE MIR 14 142 -120 2328 107 0 0 chr12 125240600 125240899 -18545556 + AluSx SINE Alu 1 299 -13 628 186 27 117 chr12 125240899 125240939 -18545516 + MIR SINE MIR 142 184 -78 1729 137 36 96 chr12 125240993 125241331 -18545124 + L1MB5 LINE L1 5804 6116 -72 2198 129 3 3 chr12 125241331 125241642 -18544813 + AluSx SINE Alu 1 311 -1 1729 137 36 96 chr12 125241642 125241711 -18544744 + L1MB5 LINE L1 6116 6188 0 21 0 0 0 chr12 125242017 125242038 -18544417 + GC_rich Low_complexity Low_complexity 1 21 0 1702 164 4 14 chr12 125242619 125242894 -18543561 - AluJb SINE Alu -40 272 1 227 357 12 0 chr12 125242973 125243057 -18543398 - L2 LINE L2 -5 3267 3183 1604 179 11 7 chr12 125243101 125243374 -18543081 + AluJb SINE Alu 33 306 -6 234 0 0 0 chr12 125243385 125243411 -18543044 + (CA)n Simple_repeat Simple_repeat 1 26 0 423 316 70 86 chr12 125243485 125244111 -18542344 - L2 LINE L2 -374 2940 2325 866 209 19 63 chr12 125244522 125244790 -18541665 + MIR SINE MIR 5 260 -2 260 237 226 21 chr12 125245406 125245549 -18540906 + MIR SINE MIR 16 175 -63 230 162 0 0 chr12 125245606 125245643 -18540812 - MIR SINE MIR -5 257 221 445 187 22 0 chr12 125245711 125245802 -18540653 - LTR33 LTR ERVL -31 490 398 270 336 8 41 chr12 125245895 125246017 -18540438 + MIR SINE MIR 119 236 -26 1761 157 6 47 chr12 125246102 125246421 -18540034 - AluJo SINE Alu -1 311 6 787 87 29 0 chr12 125246454 125246557 -18539898 - U6 snRNA snRNA 0 107 2 2238 107 0 7 chr12 125246568 125246868 -18539587 - AluSx SINE Alu -14 298 1 954 152 120 23 chr12 125246868 125247124 -18539331 + MLT1D LTR MaLR 27 237 -268 810 191 0 7 chr12 125247118 125247270 -18539185 + MLT1D LTR MaLR 353 503 -2 * 607 265 116 0 chr12 125247271 125247452 -18539003 - LTR33 LTR ERVL -316 205 4 436 168 129 29 chr12 125247458 125247576 -18538879 - MIR SINE MIR -62 146 37 * 639 311 49 29 chr12 125247575 125247819 -18538636 - MIR SINE MIR -12 250 2 2241 134 27 9 chr12 125248096 125248425 -18538030 + MER1B DNA MER1_type 1 335 -2 320 271 0 0 chr12 125248825 125248910 -18537545 - MER117 DNA MER1_type -13 184 100 510 323 6 6 chr12 125249560 125249718 -18536737 + MIR3 SINE MIR 17 174 -34 945 109 0 109 chr12 125249719 125249791 -18536664 - MSTB2 LTR MaLR 0 457 379 2117 122 7 3 chr12 125249791 125250094 -18536361 - AluSx SINE Alu -8 304 1 945 109 0 109 chr12 125250094 125250214 -18536241 - MSTB2 LTR MaLR -78 379 286 342 70 0 18 chr12 125250314 125250371 -18536084 + AluSp/q SINE Alu 245 300 -3 982 181 100 52 chr12 125250469 125250595 -18535860 + MER33 DNA MER1_type 1 119 -2466 2498 94 0 0 chr12 125250595 125250903 -18535552 + AluSg SINE Alu 3 310 0 982 181 100 52 chr12 125250903 125250948 -18535507 + MER33 DNA MER1_type 119 160 -2425 1905 151 13 31 chr12 125250948 125251266 -18535189 + AluJb SINE Alu 1 312 0 982 181 100 52 chr12 125251266 125251402 -18535053 + MER33 DNA MER1_type 160 324 0 237 353 66 25 chr12 125251884 125252006 -18534449 + MIR SINE MIR 2 128 -134 1398 180 3 3 chr12 125252112 125252396 -18534059 + L1PB1 LINE L1 4514 4797 -1349 4901 144 16 1 chr12 125252970 125253959 -18532496 + L1PB1 LINE L1 4784 5797 -354 180 111 0 0 chr12 125253959 125253986 -18532469 + (TA)n Simple_repeat Simple_repeat 1 27 0 4901 144 16 1 chr12 125253986 125254190 -18532265 + L1PB1 LINE L1 5797 5996 -155 232 239 28 28 chr12 125254563 125254634 -18531821 + MIR SINE MIR 5 75 -187 1781 174 20 3 chr12 125254748 125255053 -18531402 - AluJb SINE Alu -2 310 1 207 69 0 0 chr12 125255062 125255091 -18531364 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 723 267 28 0 chr12 125255156 125255332 -18531123 + MER58A DNA MER1_type 44 224 0 303 188 60 158 chr12 125255334 125255380 -18531075 + L1ME4a LINE L1 5989 6038 -83 2228 129 3 3 chr12 125255380 125255690 -18530765 + AluJb SINE Alu 3 312 0 303 188 60 158 chr12 125255690 125255776 -18530679 + L1ME4a LINE L1 6038 6108 -13 240 230 46 46 chr12 125256199 125256286 -18530169 + L2 LINE L2 3227 3313 0 973 198 0 0 chr12 125256294 125256466 -18529989 - AluJo SINE Alu -15 297 126 2412 101 0 0 chr12 125256497 125256804 -18529651 - AluSc SINE Alu -2 307 1 2332 108 0 3 chr12 125257030 125257326 -18529129 - AluSc SINE Alu -14 295 1 1048 82 7 7 chr12 125257326 125257461 -18528994 - AluSq/x SINE Alu -178 135 1 2761 143 15 2 chr12 125258070 125258531 -18527924 + L1MB3 LINE L1 5717 6183 0 240 35 0 0 chr12 125259130 125259159 -18527296 + (GA)n Simple_repeat Simple_repeat 2 30 0 2293 109 6 3 chr12 125259179 125259490 -18526965 + AluSq SINE Alu 1 312 -1 185 143 0 0 chr12 125259595 125259623 -18526832 - MIR SINE MIR -118 144 117 422 282 0 34 chr12 125259692 125259809 -18526646 + MIR SINE MIR 30 142 -66 2212 118 14 0 chr12 125259960 125260256 -18526199 + AluSx SINE Alu 1 300 -12 508 293 35 54 chr12 125260987 125261116 -18525339 + MIR SINE MIR 14 135 -127 2390 103 0 0 chr12 125261116 125261417 -18525038 - AluSx SINE Alu -11 301 1 508 293 35 54 chr12 125261417 125261543 -18524912 + MIR SINE MIR 135 262 0 375 316 0 0 chr12 125261579 125261674 -18524781 + MER5C DNA MER1_type 1 95 -229 586 234 35 0 chr12 125261741 125261882 -18524573 + MIR SINE MIR 33 178 -84 414 333 71 6 chr12 125261920 125262088 -18524367 - MIR SINE MIR -65 197 19 502 238 63 21 chr12 125262092 125262235 -18524220 + MIR SINE MIR 83 231 -31 324 227 0 0 chr12 125262264 125262352 -18524103 + CT-rich Low_complexity Low_complexity 3 90 0 927 143 77 6 chr12 125262404 125262572 -18523883 + MSTB2 LTR MaLR 15 194 -263 1821 92 32 0 chr12 125262674 125262924 -18523531 + L1PA10 LINE L1 5906 6163 -5 2379 110 3 0 chr12 125262943 125263253 -18523202 + AluSp SINE Alu 1 311 -2 500 182 179 21 chr12 125263253 125263408 -18523047 + MIR SINE MIR 24 214 -48 958 239 81 45 chr12 125263410 125263562 -18522893 + L1MC4 LINE L1 7631 7776 -266 2324 101 3 13 chr12 125263562 125263868 -18522587 + AluSx SINE Alu 1 303 -9 958 239 81 45 chr12 125263868 125264112 -18522343 + L1MC4 LINE L1 7776 8041 -1 1775 123 22 74 chr12 125264182 125264506 -18521949 + AluJo SINE Alu 3 309 -3 291 218 0 0 chr12 125264507 125264562 -18521893 + MIR SINE MIR 207 261 -1 516 264 55 60 chr12 125264754 125264989 -18521466 - L2 LINE L2 -213 3059 2826 198 0 0 0 chr12 125265473 125265495 -18520960 + (TC)n Simple_repeat Simple_repeat 2 23 0 1985 154 3 7 chr12 125265510 125265809 -18520646 - AluJo SINE Alu -14 298 1 188 286 357 0 chr12 125265809 125265893 -18520562 + L2 LINE L2 3149 3262 -10 459 218 38 8 chr12 125266075 125266208 -18520247 - Charlie1 DNA MER1_type -5 2756 2620 2112 109 0 21 chr12 125266235 125266551 -18519904 + AluSg SINE Alu 1 310 0 1180 150 48 0 chr12 125266557 125266764 -18519691 - Charlie1 DNA MER1_type -2544 217 1 236 336 131 0 chr12 125266781 125266888 -18519567 + L2 LINE L2 3134 3254 -18 220 196 71 0 chr12 125266939 125266995 -18519460 - L2 LINE L2 -61 3211 3152 1996 154 3 3 chr12 125267254 125267559 -18518896 - AluJo SINE Alu -7 305 1 2098 129 0 0 chr12 125267897 125268213 -18518242 + AluSx SINE Alu 2 317 0 255 286 22 11 chr12 125268289 125268380 -18518075 - MIR SINE MIR -126 136 45 1042 189 63 143 chr12 125268380 125268779 -18517676 + MLT1E LTR MaLR 1 430 -163 267 31 0 0 chr12 125268779 125268811 -18517644 + (TC)n Simple_repeat Simple_repeat 2 33 0 1042 189 63 143 chr12 125268811 125268822 -18517633 + MLT1E LTR MaLR 430 440 -153 1059 94 0 0 chr12 125268822 125269002 -18517453 + (TA)n Simple_repeat Simple_repeat 1 180 0 1042 189 63 143 chr12 125269002 125269016 -18517439 + MLT1E LTR MaLR 440 454 -139 2194 118 0 0 chr12 125269016 125269304 -18517151 - AluSx SINE Alu -24 288 1 1947 163 0 3 chr12 125269305 125269600 -18516855 - AluJo SINE Alu -18 294 1 1042 189 63 143 chr12 125269600 125269706 -18516749 + MLT1E LTR MaLR 453 592 -1 216 67 0 0 chr12 125269826 125269856 -18516599 + (CA)n Simple_repeat Simple_repeat 2 31 0 316 322 58 40 chr12 125270334 125270508 -18515947 + MIR SINE MIR 8 184 -78 249 139 0 0 chr12 125270967 125271010 -18515445 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 216 246 0 0 chr12 125270995 125271064 -18515391 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 * 233 329 0 0 chr12 125271067 125271140 -18515315 + (CCCA)n Simple_repeat Simple_repeat 1 73 0 287 200 0 14 chr12 125271151 125271221 -18515234 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2017 152 10 0 chr12 125271486 125271776 -18514679 + AluJo SINE Alu 1 293 -19 215 56 56 0 chr12 125271777 125271813 -18514642 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 * 398 212 15 15 chr12 125271811 125271948 -18514507 + GA-rich Low_complexity Low_complexity 4 140 0 1038 154 6 12 chr12 125272100 125272298 -18514157 - FRAM SINE Alu 0 176 1 1806 177 3 13 chr12 125272364 125272663 -18513792 - AluJo SINE Alu -16 296 1 365 333 21 32 chr12 125273228 125273414 -18513041 + L2 LINE L2 2876 3059 -254 991 208 187 75 chr12 125273500 125273967 -18512488 + MLT1G1 LTR MaLR 1 537 -58 1326 184 110 7 chr12 125273967 125274276 -18512179 - MER2 DNA MER2_type -2 342 2 991 208 187 75 chr12 125274276 125274343 -18512112 + MLT1G1 LTR MaLR 537 595 0 469 285 88 7 chr12 125274344 125274481 -18511974 + L2 LINE L2 3165 3312 -1 2323 112 0 13 chr12 125274522 125274834 -18511621 - AluSx SINE Alu -4 308 1 251 234 0 65 chr12 125274852 125274929 -18511526 - L2 LINE L2 -4 3268 3197 212 200 17 17 chr12 125275605 125275665 -18510790 + CT-rich Low_complexity Low_complexity 2 61 0 1890 143 3 20 chr12 125276052 125276345 -18510110 - AluJb SINE Alu -24 288 1 292 309 159 0 chr12 125276349 125276475 -18509980 - MIR SINE MIR -48 214 69 327 205 73 119 chr12 125276623 125276774 -18509681 - MIR SINE MIR 0 262 119 2330 80 0 33 chr12 125276906 125277206 -18509249 - AluSx SINE Alu -22 290 1 22 35 0 0 chr12 125278818 125278847 -18507608 + GC_rich Low_complexity Low_complexity 1 29 0 204 186 0 47 chr12 125279832 125279875 -18506580 + polypurine Low_complexity Low_complexity 4 44 0 31 44 0 0 chr12 125280105 125280150 -18506305 + GC_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 125280255 125280278 -18506177 + GC_rich Low_complexity Low_complexity 1 23 0 200 200 35 59 chr12 125280307 125280392 -18506063 + C-rich Low_complexity Low_complexity 1 83 0 550 294 51 31 chr12 125281685 125281940 -18504515 - MIR SINE MIR -1 261 2 284 273 127 0 chr12 125281944 125282054 -18504401 + MIR SINE MIR 133 256 -6 413 291 9 0 chr12 125282353 125282463 -18503992 - MER3 DNA MER1_type -87 122 12 260 336 99 8 chr12 125282580 125282711 -18503744 + MIR3 SINE MIR 1 135 -73 2326 116 0 0 chr12 125282714 125283017 -18503438 - AluSx SINE Alu -9 303 1 944 188 21 16 chr12 125283732 125283918 -18502537 + MER20 DNA MER1_type 33 219 0 1293 148 30 34 chr12 125283987 125284086 -18502369 + MLT1B LTR MaLR 1 99 -291 1989 109 76 0 chr12 125284086 125284362 -18502093 + AluSx SINE Alu 1 297 -15 1293 148 30 34 chr12 125284362 125284389 -18502066 + MLT1B LTR MaLR 99 125 -265 2276 176 27 33 chr12 125284389 125284878 -18501577 - MER66B LTR ERV1 0 486 1 1293 148 30 34 chr12 125284878 125285014 -18501441 + MLT1B LTR MaLR 125 263 -127 278 111 0 0 chr12 125285004 125285049 -18501406 + Alu SINE Alu 259 303 -5 * 333 250 68 45 chr12 125285060 125285192 -18501263 - L1MC4a LINE L1 -1844 5964 5830 695 172 18 61 chr12 125285199 125285362 -18501093 + MIR SINE MIR 9 164 -98 1869 139 32 29 chr12 125285370 125285680 -18500775 - AluJb SINE Alu -1 311 1 2158 225 59 15 chr12 125285700 125286242 -18500213 - MLT1E2 LTR MaLR 0 626 61 312 108 0 226 chr12 125286463 125286556 -18499899 + AluS SINE Alu 2 73 -229 2161 175 29 5 chr12 125286645 125287023 -18499432 + MSTB LTR MaLR 1 387 -39 1898 122 3 79 chr12 125287023 125287159 -18499296 + AluSx SINE Alu 1 146 -185 2139 119 3 7 chr12 125287159 125287454 -18499001 + AluSx SINE Alu 1 294 -18 1898 122 3 79 chr12 125287454 125287671 -18498784 + AluSx SINE Alu 146 331 0 250 270 79 0 chr12 125287672 125287761 -18498694 - MIR SINE MIR -119 143 48 521 235 90 36 chr12 125287829 125287995 -18498460 - MIR SINE MIR -41 221 47 475 267 119 28 chr12 125288236 125288412 -18498043 + MIR SINE MIR 20 211 -51 2184 132 7 0 chr12 125288618 125288928 -18497527 - AluSx SINE Alu 0 312 1 512 181 128 27 chr12 125288951 125289100 -18497355 - MER103 DNA DNA -1 165 2 959 209 85 0 chr12 125289139 125289340 -18497115 + MER58A DNA MER1_type 1 218 -6 1008 216 54 97 chr12 125289352 125289611 -18496844 + MLT1D LTR MaLR 217 502 -3 2008 158 0 0 chr12 125289620 125289924 -18496531 + AluJb SINE Alu 1 304 -8 27 29 0 0 chr12 125290159 125290193 -18496262 + AT_rich Low_complexity Low_complexity 1 34 0 432 289 92 0 chr12 125290346 125290519 -18495936 - MLT1J2 LTR MaLR 0 450 262 187 286 0 0 chr12 125290540 125290582 -18495873 + MER5B DNA MER1_type 7 48 -130 589 260 73 24 chr12 125290599 125290845 -18495610 - MLT1J2 LTR MaLR -192 258 1 241 302 85 55 chr12 125290980 125291043 -18495412 - L1ME LINE L1 -259 5905 5845 959 179 28 0 chr12 125291043 125291222 -18495233 + MER5A DNA MER1_type 4 187 -2 241 302 85 55 chr12 125291222 125291496 -18494959 - L1ME LINE L1 -319 5845 5561 1814 186 21 0 chr12 125291496 125291787 -18494668 + AluJb SINE Alu 1 297 -15 241 302 85 55 chr12 125291787 125291828 -18494627 - L1ME LINE L1 -603 5561 5523 1822 176 10 47 chr12 125292114 125292272 -18494183 - MLT2C1 LTR ERVL 0 397 235 1998 138 3 0 chr12 125292272 125292581 -18493874 - AluSx SINE Alu 0 312 1 1822 176 10 47 chr12 125292581 125292830 -18493625 - MLT2C1 LTR ERVL -162 235 5 2059 117 46 0 chr12 125292906 125293189 -18493266 + AluSx SINE Alu 1 296 -16 318 80 0 0 chr12 125293189 125293239 -18493216 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1445 159 92 35 chr12 125293288 125293571 -18492884 + AluJo SINE Alu 1 299 -13 378 276 77 0 chr12 125293593 125293749 -18492706 - L1M4 LINE L1 -2252 3894 3727 641 306 48 0 chr12 125293777 125293983 -18492472 - MLT1J LTR MaLR -290 221 6 361 250 17 29 chr12 125293993 125294108 -18492347 - MIR SINE MIR -68 140 32 769 235 47 0 chr12 125294197 125294367 -18492088 - MIR SINE MIR -32 230 53 1715 187 10 23 chr12 125294603 125294776 -18491679 - AluJo SINE Alu -6 306 137 2045 101 63 3 chr12 125294776 125295062 -18491393 - AluSq SINE Alu -10 303 1 1715 187 10 23 chr12 125295062 125295198 -18491257 - AluJo SINE Alu -175 137 1 333 0 0 0 chr12 125295996 125296033 -18490422 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2209 116 0 7 chr12 125296484 125296778 -18489677 - AluSq SINE Alu -16 297 6 361 327 136 21 chr12 125296865 125297195 -18489260 - L2 LINE L2 0 3272 2905 454 308 11 9 chr12 125297773 125297917 -18488538 + MIR SINE MIR 5 151 -57 544 147 10 10 chr12 125297959 125298061 -18488394 + FLAM_A SINE Alu 28 129 -13 181 326 12 23 chr12 125298095 125298181 -18488274 + MIR SINE MIR 167 251 -11 2334 113 0 0 chr12 125298182 125298483 -18487972 - AluSx SINE Alu -10 302 2 204 182 0 0 chr12 125298484 125298528 -18487927 + (TG)n Simple_repeat Simple_repeat 1 44 0 283 297 97 18 chr12 125298731 125298896 -18487559 + MIR SINE MIR 42 219 -43 185 286 100 0 chr12 125299032 125299102 -18487353 + L2 LINE L2 3231 3307 -6 2293 110 3 0 chr12 125299343 125299642 -18486813 - AluSx SINE Alu -12 300 1 196 341 24 0 chr12 125299647 125299729 -18486726 - MIR SINE MIR -114 148 65 2048 140 0 19 chr12 125299752 125300060 -18486395 - AluJb SINE Alu 0 312 11 583 298 67 59 chr12 125300176 125300532 -18485923 + L2 LINE L2 2914 3272 0 390 281 143 46 chr12 125300613 125300809 -18485646 + MIR SINE MIR 27 241 -21 902 269 151 20 chr12 125301008 125301406 -18485049 - L2 LINE L2 -1 3312 2863 243 191 0 0 chr12 125301439 125301481 -18484974 + MER45A DNA AcHobo 54 95 -83 1328 125 0 25 chr12 125301487 125301687 -18484768 - AluSg/x SINE Alu -17 295 101 1132 122 0 6 chr12 125301688 125301844 -18484611 - AluSx SINE Alu -157 155 1 415 171 40 0 chr12 125301844 125301920 -18484535 + MER45A DNA AcHobo 99 177 -1 259 261 17 68 chr12 125302050 125302091 -18484364 - MIR SINE MIR -61 147 105 2465 178 24 24 chr12 125302091 125302596 -18483859 - MLT1D LTR MaLR 0 505 1 259 261 17 68 chr12 125302596 125302735 -18483720 - MIR SINE MIR -103 105 12 524 266 18 41 chr12 125303394 125303563 -18482892 + MIR SINE MIR 14 178 -84 2172 147 0 0 chr12 125303809 125304121 -18482334 - AluSx SINE Alu 0 312 1 718 154 0 31 chr12 125304123 125304253 -18482202 - AluJo/FLAM SINE Alu -181 131 6 288 261 190 67 chr12 125304618 125304886 -18481569 - L2 LINE L2 -3 3310 3010 1336 118 14 36 chr12 125304925 125305145 -18481310 + AluJo SINE Alu 84 298 -14 313 189 267 10 chr12 125305505 125305622 -18480833 + MIR SINE MIR 13 143 -65 205 341 23 0 chr12 125305798 125305886 -18480569 + MIR SINE MIR 51 140 -122 26 50 0 0 chr12 125306184 125306224 -18480231 + GC_rich Low_complexity Low_complexity 1 40 0 277 240 177 0 chr12 125306553 125306649 -18479806 - L1ME3 LINE L1 -1 6161 6049 1329 154 16 94 chr12 125306652 125306894 -18479561 - MER33 DNA MER1_type -2261 324 65 198 0 0 0 chr12 125306894 125306916 -18479539 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1625 152 44 4 chr12 125306920 125307190 -18479265 - AluJb SINE Alu -31 281 1 1329 154 16 94 chr12 125307190 125307326 -18479129 - MER33 DNA MER1_type -2523 62 1 380 296 49 21 chr12 125307507 125307649 -18478806 + MIR SINE MIR 30 175 -87 192 259 0 37 chr12 125307792 125307846 -18478609 + MIR SINE MIR 111 162 -100 2177 106 3 58 chr12 125308613 125308943 -18477512 - AluSx SINE Alu 0 312 1 213 65 0 0 chr12 125309139 125309170 -18477285 + (TC)n Simple_repeat Simple_repeat 2 32 0 539 226 0 0 chr12 125309238 125309352 -18477103 + MIR SINE MIR 63 175 -57 180 176 0 0 chr12 125309390 125309424 -18477031 + (CCA)n Simple_repeat Simple_repeat 2 35 0 2263 110 16 7 chr12 125309528 125309837 -18476618 + AluSx SINE Alu 1 312 0 475 270 34 14 chr12 125309853 125310001 -18476454 + MLT1K LTR MaLR 422 572 -16 283 229 110 0 chr12 125310050 125310173 -18476282 - MIR SINE MIR -50 158 16 2043 153 3 0 chr12 125310210 125310510 -18475945 + AluSx SINE Alu 1 301 -11 1121 242 20 0 chr12 125310595 125310839 -18475616 - MIR SINE MIR -6 256 8 209 265 0 0 chr12 125311124 125311173 -18475282 - L2 LINE L2 -2 3311 3263 676 262 143 28 chr12 125311176 125311428 -18475027 - MLT1J LTR MaLR -2 509 229 944 215 67 9 chr12 125311479 125311702 -18474753 - MLT1A1 LTR MaLR -129 236 1 368 218 133 21 chr12 125311751 125311916 -18474539 - MLT1G LTR MaLR -46 533 309 348 276 59 20 chr12 125312017 125312169 -18474286 - MLT1G LTR MaLR -282 313 156 332 226 123 99 chr12 125312276 125312345 -18474110 - MIR SINE MIR -12 250 184 609 233 88 16 chr12 125312345 125312538 -18473917 - MER63A DNA MER1_type -3 207 1 332 226 123 99 chr12 125312538 125312711 -18473744 - MIR SINE MIR -78 184 2 21 0 0 0 chr12 125313696 125313717 -18472738 + AT_rich Low_complexity Low_complexity 1 21 0 2195 117 13 3 chr12 125313747 125314056 -18472399 + AluSx SINE Alu 1 312 0 331 269 50 71 chr12 125314096 125314278 -18472177 - L2 LINE L2 -195 3077 2900 1104 224 5 0 chr12 125314351 125314570 -18471885 + MER58A DNA MER1_type 5 224 0 239 361 14 28 chr12 125314620 125314764 -18471691 - MIR SINE MIR -119 143 2 667 210 147 0 chr12 125315039 125315196 -18471259 - MER5A DNA MER1_type -1 188 9 342 359 48 0 chr12 125315297 125315442 -18471013 + L2 LINE L2 3103 3254 -18 279 246 0 24 chr12 125315442 125315609 -18470846 + GA-rich Low_complexity Low_complexity 2 164 0 606 172 0 55 chr12 125315665 125315793 -18470662 + FLAM_C SINE Alu 1 121 -12 1557 118 68 5 chr12 125316465 125316685 -18469770 - AluSx SINE Alu -76 236 3 849 228 28 9 chr12 125316867 125317078 -18469377 - L1MD3 LINE L1 -10 7985 7771 889 103 0 24 chr12 125317079 125317205 -18469250 - FRAM SINE Alu 0 176 54 2429 103 0 0 chr12 125417265 125417575 -18368880 - AluSq SINE Alu -2 311 2 239 340 34 68 chr12 125417614 125417820 -18368635 + L2 LINE L2 3007 3205 -67 329 289 95 47 chr12 125418560 125418750 -18367705 - MIR SINE MIR -2 260 62 614 157 15 67 chr12 125418756 125418890 -18367565 + FLAM_C SINE Alu 6 132 -11 665 167 18 0 chr12 125419507 125419621 -18366834 - FRAM SINE Alu -21 155 40 403 322 72 11 chr12 125420140 125420320 -18366135 - MIR SINE MIR -33 229 39 481 285 86 0 chr12 125421657 125421808 -18364647 + MIR SINE MIR 49 212 -50 227 298 36 0 chr12 125422284 125422368 -18364087 - L1P LINE L1 -4347 1799 1713 990 299 102 51 chr12 125422478 125423530 -18362925 - L1MEd LINE L1 -4949 1170 66 2394 97 0 0 chr12 125423614 125423912 -18362543 - AluSx SINE Alu -14 298 1 559 258 61 12 chr12 125424177 125424340 -18362115 + MIR SINE MIR 1 171 -91 1273 109 0 0 chr12 125424452 125424617 -18361838 - AluSg/x SINE Alu -14 296 132 2151 96 0 36 chr12 125425573 125425874 -18360581 + AluJo SINE Alu 1 290 -22 1054 110 0 0 chr12 125425909 125426045 -18360410 + AluSq/x SINE Alu 1 136 -177 1334 210 98 18 chr12 125426045 125426431 -18360024 - L1MB5 LINE L1 -48 6126 5710 318 243 191 12 chr12 125427845 125428018 -18358437 + MER102b DNA MER1_type 136 339 -2 3134 201 14 45 chr12 125428076 125428191 -18358264 - L1MB7 LINE L1 -10 6174 6057 2133 137 10 0 chr12 125428191 125428491 -18357964 - AluSx SINE Alu -9 303 1 3134 201 14 45 chr12 125428491 125428927 -18357528 - L1MB7 LINE L1 -127 6057 5649 1912 152 24 0 chr12 125428927 125429216 -18357239 + AluSx SINE Alu 1 296 -16 3134 201 14 45 chr12 125429216 125429403 -18357052 - L1MB7 LINE L1 -535 5649 5458 395 328 68 60 chr12 125429427 125429785 -18356670 - L1ME4a LINE L1 -11 6110 5756 2211 124 7 0 chr12 125429785 125430084 -18356371 - AluSq SINE Alu -12 301 1 1307 184 115 32 chr12 125430086 125430364 -18356091 - AluJb SINE Alu -1 301 1 395 328 68 60 chr12 125430364 125430377 -18356078 - L1ME4a LINE L1 -365 5756 5745 2352 88 0 3 chr12 125430377 125430684 -18355771 - AluSq SINE Alu -7 306 1 395 328 68 60 chr12 125430684 125430808 -18355647 - L1ME4a LINE L1 -376 5745 5607 900 218 36 16 chr12 125430889 125431141 -18355314 - MER33 DNA MER1_type -36 288 32 1970 98 4 0 chr12 125431853 125432119 -18354336 - AluSx SINE Alu -45 267 1 336 348 107 11 chr12 125432188 125432366 -18354089 + MIR SINE MIR 68 262 0 1317 188 21 57 chr12 125432390 125432726 -18353729 - L1MB8 LINE L1 0 6178 5855 2217 98 0 0 chr12 125432731 125433026 -18353429 - AluSx SINE Alu -17 295 1 529 278 149 0 chr12 125433186 125433380 -18353075 + MIR SINE MIR 38 260 -2 323 343 30 45 chr12 125433444 125433645 -18352810 - L1ME4a LINE L1 -11 6110 5913 292 262 11 82 chr12 125433786 125433823 -18352632 - L1ME4a LINE L1 -326 5795 5757 2019 118 14 7 chr12 125433823 125434120 -18352335 - AluSx SINE Alu -13 299 1 292 262 11 82 chr12 125434120 125434265 -18352190 - L1ME4a LINE L1 -364 5757 5623 1348 243 79 94 chr12 125434350 125434972 -18351483 - L1ME3A LINE L1 -5 6165 5559 229 340 80 0 chr12 125434982 125435082 -18351373 + MIR SINE MIR 90 197 -65 259 253 90 90 chr12 125435437 125435562 -18350893 + MIR SINE MIR 15 142 -120 1978 133 3 0 chr12 125435562 125435856 -18350599 + AluSx SINE Alu 1 295 -17 259 253 90 90 chr12 125435856 125435908 -18350547 + MIR SINE MIR 141 192 -70 1488 165 0 73 chr12 125436189 125436319 -18350136 + AluJb SINE Alu 1 139 -173 999 86 0 0 chr12 125436319 125436458 -18349997 + (TA)n Simple_repeat Simple_repeat 1 139 0 1488 165 0 73 chr12 125436458 125436642 -18349813 + AluJb SINE Alu 139 292 -20 2225 90 0 0 chr12 125437130 125437429 -18349026 - AluY SINE Alu 0 311 13 1792 147 3 30 chr12 125437924 125438223 -18348232 - AluJo SINE Alu -16 296 6 831 208 119 54 chr12 125438229 125438489 -18347966 - AluJo SINE Alu -16 296 20 288 249 191 75 chr12 125438974 125439147 -18347308 - MLT1K LTR MaLR -319 269 77 1281 184 0 0 chr12 125439299 125439517 -18346938 + AluJo SINE Alu 72 289 -23 302 293 112 9 chr12 125439766 125439882 -18346573 + MIR SINE MIR 20 147 -115 707 145 120 0 chr12 125439923 125440040 -18346415 + FLAM_C SINE Alu 1 131 -2 349 184 219 0 chr12 125440289 125440403 -18346052 - MER5A DNA MER1_type 0 189 51 258 353 63 21 chr12 125440871 125441061 -18345394 + L2 LINE L2 3074 3271 -1 223 143 18 18 chr12 125441064 125441120 -18345335 + (TGAA)n Simple_repeat Simple_repeat 4 59 0 1325 132 14 5 chr12 125441318 125441531 -18344924 - AluJb SINE Alu -12 300 86 546 181 20 74 chr12 125441533 125441682 -18344773 - MIR SINE MIR -74 188 48 2081 104 7 0 chr12 125442767 125443055 -18343400 + AluSx SINE Alu 1 290 -22 325 237 0 14 chr12 125443056 125443138 -18343317 + MER69 DNA AcHobo 2443 2523 -3 2087 117 3 0 chr12 125443756 125444055 -18342400 - AluSx SINE Alu -10 302 3 1616 181 17 7 chr12 125444111 125444404 -18342051 + AluJb SINE Alu 1 296 -16 426 188 195 13 chr12 125444448 125444602 -18341853 - MIR SINE MIR -20 242 61 1567 192 3 31 chr12 125444731 125445022 -18341433 - AluJo SINE Alu -19 283 1 2242 68 20 7 chr12 125445640 125445933 -18340522 + AluY SINE Alu 1 297 -14 1046 162 0 0 chr12 125445933 125446106 -18340349 + AluJb SINE Alu 134 306 -6 288 285 80 0 chr12 125446152 125446289 -18340166 - L2 LINE L2 -226 3087 2940 796 291 170 40 chr12 125446399 125446433 -18340022 + L2 LINE L2 2192 2220 -1094 1692 146 26 0 chr12 125446433 125446700 -18339755 - AluJb SINE Alu -38 274 1 796 291 170 40 chr12 125446700 125447360 -18339095 + L2 LINE L2 2220 2976 -338 604 179 112 0 chr12 125447365 125447499 -18338956 - MER20 DNA MER1_type 0 219 71 495 294 132 11 chr12 125447514 125447786 -18338669 + L2 LINE L2 2998 3302 -11 1356 142 41 0 chr12 125448112 125448331 -18338124 + AluJo SINE Alu 23 250 -62 530 176 29 0 chr12 125448336 125448438 -18338017 - MER5A DNA MER1_type -80 109 5 316 283 58 29 chr12 125449040 125449213 -18337242 + MIR SINE MIR 13 190 -72 512 161 168 37 chr12 125449698 125449785 -18336670 + MIR SINE MIR 43 117 -145 2279 101 0 0 chr12 125449785 125450093 -18336362 + AluSx SINE Alu 1 308 -4 512 161 168 37 chr12 125450093 125450166 -18336289 + MIR SINE MIR 117 224 -38 281 329 12 0 chr12 125450191 125450276 -18336179 + (CTA)n Simple_repeat Simple_repeat 2 87 0 503 330 10 30 chr12 125450281 125450481 -18335974 - MIR SINE MIR -17 245 50 229 242 0 45 chr12 125450514 125450580 -18335875 - MIR SINE MIR -91 171 109 242 245 102 61 chr12 125451010 125451108 -18335347 - L2 LINE L2 -2 3270 3169 327 343 187 0 chr12 125451117 125451315 -18335140 - MIR SINE MIR -12 250 16 242 283 87 0 chr12 125451546 125451638 -18334817 + MIR SINE MIR 19 118 -144 345 256 76 58 chr12 125451940 125452112 -18334343 - L1ME3A LINE L1 -108 6062 5888 364 188 0 0 chr12 125452136 125452200 -18334255 - L1MB7 LINE L1 -9 6175 6112 845 216 96 0 chr12 125452208 125452416 -18334039 - L1MB7 LINE L1 -139 6045 5818 1671 103 22 0 chr12 125452416 125452648 -18333807 + AluSx SINE Alu 1 237 -75 524 132 0 0 chr12 125452673 125452749 -18333706 + AluSx SINE Alu 224 299 -11 987 169 0 55 chr12 125453535 125453736 -18332719 - AluJo SINE Alu -3 309 120 1685 181 17 55 chr12 125453736 125454047 -18332408 - L1MB8 LINE L1 0 6178 5884 1899 112 0 68 chr12 125454047 125454368 -18332087 - AluSx SINE Alu -11 301 3 1685 181 17 55 chr12 125454368 125454459 -18331996 - L1MB8 LINE L1 -294 5884 5791 623 103 0 0 chr12 125454459 125454546 -18331909 + AluSg/x SINE Alu 216 302 -8 919 148 163 10 chr12 125454547 125454750 -18331705 - L1MB8 LINE L1 -380 5798 5565 1825 141 14 3 chr12 125454909 125455199 -18331256 + AluJo SINE Alu 1 293 -19 322 186 0 0 chr12 125455710 125455769 -18330686 - MLT1F LTR MaLR 0 542 484 955 153 6 40 chr12 125455769 125455946 -18330509 + FRAM SINE Alu 1 169 -7 1084 82 0 0 chr12 125455951 125456086 -18330369 + AluSq/x SINE Alu 1 135 -177 2128 124 0 9 chr12 125456086 125456401 -18330054 + AluSx SINE Alu 1 312 0 860 220 181 58 chr12 125456403 125456834 -18329621 - MLT1F LTR MaLR -52 490 7 247 160 0 173 chr12 125456834 125456865 -18329590 + MIR SINE MIR 121 133 -129 2018 135 0 3 chr12 125456865 125457161 -18329294 + AluSx SINE Alu 1 295 -17 247 160 0 173 chr12 125457161 125457204 -18329251 + MIR SINE MIR 133 182 -80 237 159 0 0 chr12 125458519 125458563 -18327892 + (TG)n Simple_repeat Simple_repeat 1 44 0 191 228 0 114 chr12 125458778 125458857 -18327598 - MIR SINE MIR -157 105 36 757 183 8 8 chr12 125460234 125460365 -18326090 + FLAM_A SINE Alu 1 131 -2 1699 172 28 0 chr12 125461366 125461657 -18324798 - AluJb SINE Alu -13 299 1 1207 133 120 9 chr12 125461954 125462179 -18324276 - MER58B DNA MER1_type 0 341 92 669 244 104 0 chr12 125462191 125462355 -18324100 + AluJo SINE Alu 121 301 -11 2187 118 0 3 chr12 125462377 125462690 -18323765 - AluSx SINE Alu 0 312 1 366 275 38 0 chr12 125462692 125462772 -18323683 - MER58B DNA MER1_type -258 83 1 308 330 72 34 chr12 125464053 125464262 -18322193 + MIR SINE MIR 34 250 -12 1335 205 10 16 chr12 125464264 125464576 -18321879 + AluJo SINE Alu 1 310 -2 1967 136 3 13 chr12 125464584 125464893 -18321562 + AluSx SINE Alu 1 306 -6 554 194 15 0 chr12 125465217 125465349 -18321106 - MIR SINE MIR -63 145 36 219 214 0 36 chr12 125466278 125466334 -18320121 - MIR3 SINE MIR -45 163 110 2158 117 7 0 chr12 125467382 125467691 -18318764 - AluSx SINE Alu -1 311 1 1536 162 0 83 chr12 125468005 125468344 -18318111 - AluJo SINE Alu -1 311 1 185 281 16 16 chr12 125468456 125468520 -18317935 + MIR SINE MIR 118 181 -81 1789 101 4 36 chr12 125468558 125468866 -18317589 + AluSx SINE Alu 17 315 0 269 387 12 12 chr12 125469270 125469323 -18317132 - L1MC/D LINE L1 -1941 5867 5815 970 55 86 0 chr12 125469323 125469451 -18317004 + MER85 DNA T2_type 1 139 0 269 387 12 12 chr12 125469451 125469565 -18316890 - L1MC/D LINE L1 -1992 5816 5700 2155 109 0 0 chr12 125470675 125470968 -18315487 + AluSx SINE Alu 1 293 -19 1787 167 7 0 chr12 125473474 125473773 -18312682 - AluJb SINE Alu -11 301 1 1584 148 0 11 chr12 125475034 125475328 -18311127 - AluJb SINE Alu 0 321 31 2128 80 35 0 chr12 125476283 125476572 -18309883 + AluSx SINE Alu 11 309 -3 3955 169 63 9 chr12 125479801 125480581 -18305874 + MER6 DNA MER2_type 1 822 -43 2188 96 0 0 chr12 125480583 125480876 -18305579 - AluSx SINE Alu -19 293 1 446 179 0 24 chr12 125480876 125480960 -18305495 + MER6 DNA MER2_type 784 865 0 1875 136 3 23 chr12 125482397 125482698 -18303757 + AluSx SINE Alu 1 295 -17 200 327 59 0 chr12 125484984 125485085 -18301370 - MIR3 SINE MIR -21 187 81 638 184 125 0 chr12 125486964 125487100 -18299355 - FRAM SINE Alu -13 153 1 227 286 0 48 chr12 125487750 125487813 -18298642 + MLT-int LTR MaLR 780 839 -896 396 234 46 28 chr12 125489150 125489297 -18297158 + HAL1b LINE L1 470 609 -739 1662 166 10 13 chr12 125489625 125489932 -18296523 - AluJo SINE Alu -6 306 1 237 296 23 0 chr12 125490015 125490103 -18296352 + L1ME LINE L1 3372 3461 -2685 230 261 68 0 chr12 125490236 125490324 -18296131 + L1ME LINE L1 3607 3700 -2446 804 251 64 65 chr12 125490958 125491342 -18295113 + L1ME LINE L1 5269 5656 -508 374 203 318 7 chr12 125491386 125491534 -18294921 + L1MEd LINE L1 300 493 -5923 401 278 168 10 chr12 125491659 125491950 -18294505 + L1MEd LINE L1 1218 1554 -4862 311 318 27 0 chr12 125491951 125492061 -18294394 + L1MEd LINE L1 1422 1534 -4892 231 139 0 0 chr12 125492140 125492176 -18294279 + L1ME LINE L1 5764 5799 -322 24 32 0 0 chr12 125495718 125495749 -18290706 + AT_rich Low_complexity Low_complexity 1 31 0 2967 188 9 42 chr12 125496349 125497053 -18289402 + L1MB8 LINE L1 4747 5427 -743 3254 178 50 8 chr12 125497062 125497726 -18288729 + L1MB8 LINE L1 5484 6175 -3 371 270 60 72 chr12 125497998 125498304 -18288151 + L1ME LINE L1 6 293 -5777 421 296 81 65 chr12 125498355 125498662 -18287793 + L1ME LINE L1 184 495 -5575 1520 252 56 61 chr12 125498717 125499491 -18286964 + L1ME LINE L1 472 1211 -4869 221 0 35 0 chr12 125499633 125499662 -18286793 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 276 201 153 62 chr12 125499665 125499809 -18286646 - MER104 DNA Tc2 -18 162 6 1688 89 12 12 chr12 125500126 125500373 -18286082 - AluSx SINE Alu -2 310 64 988 134 35 29 chr12 125501271 125501443 -18285012 + MER2 DNA MER2_type 1 173 -172 201 175 0 0 chr12 125502257 125502297 -18284158 + A-rich Low_complexity Low_complexity 1 40 0 288 222 56 28 chr12 125503787 125503859 -18282596 - L2 LINE L2 0 3272 3199 1462 144 3 98 chr12 125503983 125504310 -18282145 - AluJo SINE Alu -16 296 1 1721 90 128 4 chr12 125504315 125504581 -18281874 - AluSx SINE Alu -13 299 1 310 364 77 0 chr12 125506237 125506432 -18280023 - L1ME4a LINE L1 -1 6120 5911 21 36 0 0 chr12 125506535 125506563 -18279892 + AT_rich Low_complexity Low_complexity 1 28 0 808 292 117 56 chr12 125508337 125509207 -18277248 + L1MEd LINE L1 6 928 -5191 304 298 107 8 chr12 125509209 125509340 -18277115 + L1MEd LINE L1 954 1097 -5022 332 303 71 42 chr12 125509451 125509830 -18276625 + L1MEd LINE L1 1275 1664 -4646 215 220 0 0 chr12 125510084 125510134 -18276321 + L2 LINE L2 3262 3311 -2 295 311 37 52 chr12 125512328 125512463 -18273992 - MIR SINE MIR -72 190 58 457 333 118 18 chr12 125512551 125512779 -18273676 - MIR SINE MIR 0 262 12 853 208 11 0 chr12 125512785 125512968 -18273487 + MER5A DNA MER1_type 5 189 0 2331 41 24 0 chr12 125513125 125513420 -18273035 + AluY SINE Alu 1 302 -9 429 195 47 62 chr12 125514951 125515079 -18271376 + MER5B DNA MER1_type 6 131 -47 2031 114 7 0 chr12 125515109 125515399 -18271056 - AluSx SINE Alu -19 293 2 210 223 16 124 chr12 125515442 125515460 -18270995 - MIR3 SINE MIR -4 204 186 1367 159 50 25 chr12 125515460 125515743 -18270712 + AluJo SINE Alu 1 290 -22 210 223 16 124 chr12 125515743 125515845 -18270610 - MIR3 SINE MIR -22 186 97 1778 154 0 25 chr12 125516019 125516338 -18270117 - AluJb SINE Alu -1 311 1 964 201 83 0 chr12 125516560 125516764 -18269691 - MER58A DNA MER1_type -2 222 2 312 288 106 41 chr12 125516877 125517047 -18269408 - L1MC4 LINE L1 -107 7935 7755 2215 100 7 3 chr12 125517193 125517503 -18268952 + AluSx SINE Alu 1 311 -1 1869 149 0 3 chr12 125517658 125517953 -18268502 - AluJb SINE Alu -14 298 5 1559 174 0 10 chr12 125518586 125518879 -18267576 - AluJb SINE Alu -22 290 1 727 148 38 148 chr12 125518916 125519179 -18267276 - L1MA9 LINE L1 0 6312 6079 2931 148 20 35 chr12 125519222 125519486 -18266969 - L1MA9 LINE L1 -229 6083 5830 2162 103 20 0 chr12 125519486 125519788 -18266667 - AluSx SINE Alu -4 308 1 2931 148 20 35 chr12 125519788 125520064 -18266391 - L1MA9 LINE L1 -482 5830 5551 2096 108 10 0 chr12 125520322 125520617 -18265838 + AluSq SINE Alu 1 298 -15 578 302 33 11 chr12 125521454 125521636 -18264819 + MIR SINE MIR 37 222 -40 210 249 30 106 chr12 125521688 125521832 -18264623 - MIR SINE MIR -37 171 34 406 246 9 27 chr12 125522008 125522118 -18264337 + MIR SINE MIR 84 191 -71 1967 129 10 0 chr12 125522130 125522433 -18264022 + AluSx SINE Alu 1 306 -6 2112 97 0 3 chr12 125523077 125523365 -18263090 + AluSx SINE Alu 1 287 -25 695 112 0 9 chr12 125524225 125524332 -18262123 - L1MB3 LINE L1 0 6183 6078 2452 65 0 0 chr12 125524574 125524880 -18261575 + AluY SINE Alu 1 306 -5 505 209 76 0 chr12 125524941 125525046 -18261409 + FLAM_A SINE Alu 1 113 -29 25 0 0 0 chr12 125525167 125525192 -18261263 + AT_rich Low_complexity Low_complexity 1 25 0 746 225 67 11 chr12 125525265 125525443 -18261012 - MER5A DNA MER1_type -1 188 1 369 313 37 15 chr12 125525502 125525636 -18260819 + MIR SINE MIR 110 246 -16 2307 118 49 0 chr12 125525638 125525985 -18260470 + THE1B LTR MaLR 1 364 0 213 291 0 0 chr12 125526042 125526097 -18260358 + L2 LINE L2 3242 3296 -17 247 260 102 39 chr12 125526099 125526226 -18260229 - L2 LINE L2 -333 2980 2846 326 228 0 0 chr12 125526310 125526389 -18260066 - L2 LINE L2 -672 2642 2564 206 181 14 104 chr12 125527916 125528060 -18258395 + (CATGT)n Simple_repeat Simple_repeat 3 133 0 225 231 30 52 chr12 125530009 125530237 -18256218 + (CACCAT)n Simple_repeat Simple_repeat 1 222 0 * 363 126 20 131 chr12 125530234 125530433 -18256022 + (CATGT)n Simple_repeat Simple_repeat 1 177 0 223 226 39 66 chr12 125531061 125531242 -18255213 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 232 228 44 50 chr12 125531148 125531328 -18255127 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 222 111 19 37 chr12 125531415 125531469 -18254986 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 467 217 0 118 chr12 125531829 125531911 -18254544 + MIR SINE MIR 13 70 -192 1600 104 0 0 chr12 125531911 125532113 -18254342 - AluSg/x SINE Alu -15 297 96 467 217 0 118 chr12 125532113 125532182 -18254273 + MIR SINE MIR 70 146 -116 1754 141 50 14 chr12 125533019 125533316 -18253139 - AluJb SINE Alu -4 308 1 2342 94 0 3 chr12 125533579 125533878 -18252577 - AluSx SINE Alu -14 298 1 238 114 23 45 chr12 125534137 125534181 -18252274 + MER106B DNA MER1_type 3 45 -1014 507 33 0 0 chr12 125534216 125534277 -18252178 + (TA)n Simple_repeat Simple_repeat 1 61 0 1055 110 0 0 chr12 125534322 125534458 -18251997 + AluSq/x SINE Alu 1 136 -176 2290 107 3 10 chr12 125534458 125534766 -18251689 + AluSq SINE Alu 1 306 -7 1303 180 115 32 chr12 125534779 125535057 -18251398 + AluJb SINE Alu 1 301 -11 1527 103 5 0 chr12 125535059 125535253 -18251202 + AluSq SINE Alu 1 195 -118 2276 114 3 0 chr12 125535406 125535713 -18250742 - AluSg SINE Alu -2 308 1 253 247 14 41 chr12 125535781 125535854 -18250601 - L2 LINE L2 -299 2973 2903 450 289 49 23 chr12 125535911 125535936 -18250519 + MIR SINE MIR 12 35 -227 1770 149 6 37 chr12 125535936 125536257 -18250198 + AluJo SINE Alu 1 311 -1 450 289 49 23 chr12 125536257 125536471 -18249984 + MIR SINE MIR 35 261 -1 388 239 77 1 chr12 125536789 125536886 -18249569 - MIR SINE MIR -72 136 36 584 198 48 8 chr12 125536949 125537075 -18249380 - MIR SINE MIR -44 218 88 430 322 20 0 chr12 125537168 125537314 -18249141 + L2 LINE L2 2914 3062 -251 254 220 55 37 chr12 125537990 125538099 -18248356 - L1MC4a LINE L1 -1643 6165 6055 356 179 45 54 chr12 125538610 125538722 -18247733 - MIR SINE MIR -126 136 26 264 212 47 0 chr12 125539420 125539505 -18246950 - MIR SINE MIR -118 144 56 25 31 0 0 chr12 125539527 125539559 -18246896 + GC_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr12 125539627 125539655 -18246800 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 125539851 125539875 -18246580 + GC_rich Low_complexity Low_complexity 1 24 0 2407 91 3 0 chr12 125540300 125540608 -18245847 + AluSx SINE Alu 1 309 -3 452 204 2 4 chr12 125540610 125540716 -18245739 + L1MB5 LINE L1 5676 5780 -381 1162 154 23 130 chr12 125540716 125541003 -18245452 + AluJb SINE Alu 45 300 -12 2141 125 3 3 chr12 125541003 125541315 -18245140 + AluSx SINE Alu 1 312 0 1162 154 23 130 chr12 125541315 125541326 -18245129 + AluJb SINE Alu 300 311 -1 1770 157 89 5 chr12 125541327 125541696 -18244759 + L1MB5 LINE L1 5775 6174 0 389 148 0 34 chr12 125541706 125541794 -18244661 + MER106A DNA MER1_type 148 232 -4 2152 115 30 0 chr12 125542034 125542329 -18244126 + AluSx SINE Alu 1 304 -8 1908 148 47 3 chr12 125542343 125542641 -18243814 - AluJo SINE Alu -1 311 1 195 42 0 0 chr12 125542866 125542890 -18243565 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2374 110 3 0 chr12 125543320 125543630 -18242825 + AluSx SINE Alu 1 311 -1 1738 132 62 7 chr12 125543630 125543901 -18242554 + AluSc SINE Alu 1 287 -22 1884 124 14 11 chr12 125543926 125544208 -18242247 + AluSq SINE Alu 19 301 -12 230 167 30 30 chr12 125545489 125545555 -18240900 + MLT1J1 LTR MaLR 363 428 -18 412 211 269 19 chr12 125545892 125546048 -18240407 + MER58C DNA MER1_type 3 197 -18 228 86 0 0 chr12 125546209 125546244 -18240211 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr12 125548788 125548811 -18237644 + AT_rich Low_complexity Low_complexity 1 23 0 2232 135 3 0 chr12 125550496 125550808 -18235647 + AluSq SINE Alu 1 313 0 237 108 0 0 chr12 125550817 125550854 -18235601 + (A)n Simple_repeat Simple_repeat 1 37 0 2286 121 3 0 chr12 125550855 125551161 -18235294 + AluSg1 SINE Alu 1 307 -2 332 353 26 20 chr12 125551830 125551983 -18234472 + L1MC4 LINE L1 5666 5819 -1989 935 150 0 0 chr12 125552702 125552835 -18233620 - FLAM_C SINE Alu 0 133 1 868 224 63 0 chr12 125553030 125553235 -18233220 + MER20 DNA MER1_type 2 219 0 279 0 0 0 chr12 125554407 125554438 -18232017 + (TG)n Simple_repeat Simple_repeat 2 32 0 423 0 0 0 chr12 125554492 125554539 -18231916 + (TG)n Simple_repeat Simple_repeat 2 48 0 257 241 19 0 chr12 125554605 125554659 -18231796 - MIR SINE MIR -6 256 202 313 290 84 47 chr12 125555161 125555458 -18230997 + L1MC4 LINE L1 6961 7268 -774 2028 143 14 0 chr12 125555718 125556011 -18230444 + AluJb SINE Alu 1 297 -15 456 216 166 71 chr12 125556011 125556450 -18230005 + L1MC4 LINE L1 7532 8012 -30 1082 227 0 5 chr12 125557928 125558126 -18228329 - AluJo SINE Alu -21 291 95 795 155 0 0 chr12 125558177 125558293 -18228162 - AluJo SINE Alu -185 117 2 349 246 198 8 chr12 125558401 125558527 -18227928 + MIR SINE MIR 4 153 -109 526 331 81 15 chr12 125559647 125559919 -18226536 + L1ME LINE L1 4872 5161 -985 458 266 89 75 chr12 125559928 125560289 -18226166 + L1MC5 LINE L1 7560 7925 -36 512 266 72 40 chr12 125560389 125560435 -18226020 + L1ME LINE L1 5268 5311 -851 2004 123 19 7 chr12 125560435 125560743 -18225712 + AluSx SINE Alu 1 312 0 512 266 72 40 chr12 125560743 125561000 -18225455 + L1ME LINE L1 5311 5581 -581 206 315 14 0 chr12 125562718 125562791 -18223664 - MIR SINE MIR -9 253 180 305 331 41 16 chr12 125563023 125563144 -18223311 - L1MC5 LINE L1 -39 7922 7799 858 223 132 0 chr12 125563637 125563834 -18222621 - MER58A DNA MER1_type -1 223 1 1883 144 0 33 chr12 125564167 125564466 -18221989 - AluJb SINE Alu -22 290 2 348 292 116 73 chr12 125564479 125564876 -18221579 - L2 LINE L2 -2 3270 2857 438 305 36 48 chr12 125565879 125566046 -18220409 + MIR SINE MIR 28 192 -70 187 301 98 49 chr12 125566365 125566508 -18219947 + L2 LINE L2 2908 3057 -215 2383 103 7 0 chr12 125566785 125567095 -18219360 + AluSx SINE Alu 1 312 0 2019 142 7 10 chr12 125567195 125567498 -18218957 + AluSx SINE Alu 1 302 -10 786 137 53 23 chr12 125567520 125567651 -18218804 + AluJb SINE Alu 2 136 -176 2329 119 3 0 chr12 125567799 125568110 -18218345 - AluSx SINE Alu 0 312 1 2567 79 0 0 chr12 125569442 125569747 -18216708 + AluSp SINE Alu 1 305 -8 1810 142 74 3 chr12 125569750 125570059 -18216396 + L1MC1 LINE L1 6003 6333 0 2128 87 27 27 chr12 125570999 125571297 -18215158 + AluY SINE Alu 1 298 -13 2400 100 0 3 chr12 125571778 125572088 -18214367 + AluSc SINE Alu 1 309 0 878 288 77 64 chr12 125572195 125572355 -18214100 + L1M4 LINE L1 3692 3848 -2298 4641 92 29 0 chr12 125572355 125573010 -18213445 + L1PA13 LINE L1 5490 6163 0 878 288 77 64 chr12 125573010 125573207 -18213248 + L1M4 LINE L1 3848 4041 -2105 882 158 0 0 chr12 125573207 125573340 -18213115 - FLAM_A SINE Alu 0 133 1 878 288 77 64 chr12 125573340 125574066 -18212389 + L1M4 LINE L1 4041 4791 -1355 2032 132 23 3 chr12 125574616 125574920 -18211535 + AluJo SINE Alu 1 310 -2 204 283 0 0 chr12 125575526 125575572 -18210883 + CT-rich Low_complexity Low_complexity 3 48 0 942 120 65 27 chr12 125575703 125575887 -18210568 - L1MD1 LINE L1 0 6242 6052 1230 231 41 44 chr12 125576285 125576571 -18209884 + MER58B DNA MER1_type 1 287 -2133 2137 109 24 7 chr12 125576571 125576864 -18209591 - AluSx SINE Alu -14 298 1 1230 231 41 44 chr12 125576864 125576919 -18209536 + MER58B DNA MER1_type 287 341 0 2082 121 24 0 chr12 125577400 125577689 -18208766 + AluJo SINE Alu 5 300 -12 301 279 116 52 chr12 125579089 125579261 -18207194 + MIR3 SINE MIR 18 200 -8 354 209 5 5 chr12 125580233 125580313 -18206142 + FLAM_A SINE Alu 61 125 -8 192 238 24 0 chr12 125580662 125580704 -18205751 - MIR SINE MIR -81 127 85 1545 263 156 11 chr12 125581529 125582533 -18203922 + L2 LINE L2 2168 3312 -1 2570 230 58 56 chr12 125582947 125584045 -18202410 - L1MC5 LINE L1 -435 7526 6494 2077 86 4 36 chr12 125584164 125584443 -18202012 - AluSc SINE Alu -15 294 25 611 294 64 41 chr12 125584600 125585038 -18201417 - HAL1b LINE L1 -620 728 281 674 96 14 34 chr12 125585055 125585201 -18201254 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 2106 123 0 3 chr12 125585201 125585485 -18200970 - AluSx SINE Alu -29 283 1 339 235 0 0 chr12 125585758 125585826 -18200629 + AluJ/FLAM SINE Alu 13 80 -222 942 120 65 27 chr12 125586159 125586343 -18200112 + L1MD1 LINE L1 6052 6242 0 204 283 0 0 chr12 125586474 125586520 -18199935 + GA-rich Low_complexity Low_complexity 3 48 0 2032 132 23 3 chr12 125587126 125587430 -18199025 - AluJo SINE Alu -2 310 1 862 289 77 64 chr12 125587980 125588706 -18197749 - L1M4 LINE L1 -1355 4791 4077 882 158 0 0 chr12 125588706 125588839 -18197616 + FLAM_A SINE Alu 1 133 0 862 289 77 64 chr12 125588839 125589036 -18197419 - L1M4 LINE L1 -2069 4077 3848 4641 92 29 0 chr12 125589036 125589691 -18196764 - L1PA13 LINE L1 0 6163 5490 862 289 77 64 chr12 125589691 125589851 -18196604 - L1M4 LINE L1 -2298 3848 3692 2400 100 0 3 chr12 125589958 125590268 -18196187 - AluSc SINE Alu 0 309 1 2128 87 27 27 chr12 125590749 125591047 -18195408 - AluY SINE Alu -13 298 1 1810 142 74 3 chr12 125591987 125592296 -18194159 - L1MC1 LINE L1 0 6333 6003 2373 96 7 0 chr12 125592299 125592602 -18193853 - AluSq SINE Alu -8 305 1 253 247 14 41 chr12 125592670 125592743 -18193712 - L2 LINE L2 -299 2973 2903 390 300 53 23 chr12 125592800 125592825 -18193630 + MIR SINE MIR 12 35 -227 1770 149 6 37 chr12 125592825 125593146 -18193309 + AluJo SINE Alu 1 311 -1 390 300 53 23 chr12 125593146 125593359 -18193096 + MIR SINE MIR 35 261 -1 388 239 77 1 chr12 125593677 125593774 -18192681 - MIR SINE MIR -72 136 36 584 198 48 8 chr12 125593837 125593963 -18192492 - MIR SINE MIR -44 218 88 430 322 20 0 chr12 125594056 125594202 -18192253 + L2 LINE L2 2914 3062 -251 254 220 55 37 chr12 125594878 125594987 -18191468 - L1MC4a LINE L1 -1643 6165 6055 356 179 45 54 chr12 125595497 125595609 -18190846 - MIR SINE MIR -126 136 26 264 212 47 0 chr12 125596307 125596392 -18190063 - MIR SINE MIR -118 144 56 25 31 0 0 chr12 125596414 125596446 -18190009 + GC_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr12 125596514 125596542 -18189913 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 125596738 125596762 -18189693 + GC_rich Low_complexity Low_complexity 1 24 0 2429 85 3 0 chr12 125597187 125597493 -18188962 + AluSx SINE Alu 1 307 -5 1862 144 13 30 chr12 125598178 125598477 -18187978 + AluJo SINE Alu 1 294 -18 270 204 214 31 chr12 125599067 125599165 -18187290 + L2 LINE L2 2939 3054 -259 433 323 54 27 chr12 125599363 125599549 -18186906 - L2 LINE L2 -2 3270 3080 349 184 193 56 chr12 125600118 125600298 -18186157 + MIR SINE MIR 6 212 -50 185 222 0 37 chr12 125600642 125600696 -18185759 + MIR SINE MIR 167 218 -44 220 188 78 31 chr12 125601369 125601433 -18185022 + MIR SINE MIR 175 241 -21 429 179 94 60 chr12 125601436 125601553 -18184902 + MER63 DNA MER1_type 1 747 -315 799 188 0 0 chr12 125601588 125601716 -18184739 - FLAM_A SINE Alu -5 128 1 221 288 103 41 chr12 125601828 125601974 -18184481 - L2 LINE L2 -51 3221 3067 3584 128 87 63 chr12 125602205 125602423 -18184032 + LTR8A LTR ERV1 1 212 -515 1810 175 3 22 chr12 125602423 125602737 -18183718 + AluJo SINE Alu 1 308 -4 3584 128 87 63 chr12 125602737 125603228 -18183227 + LTR8A LTR ERV1 212 727 0 349 278 10 10 chr12 125603580 125603677 -18182778 + MIR SINE MIR 48 144 -118 23 0 0 0 chr12 125604205 125604228 -18182227 + AT_rich Low_complexity Low_complexity 1 23 0 2223 149 48 73 chr12 125604572 125604782 -18181673 + MLT1D LTR MaLR 1 215 -290 1709 176 0 11 chr12 125604782 125605066 -18181389 + AluJb SINE Alu 1 281 -31 200 33 0 33 chr12 125605066 125605096 -18181359 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2223 149 48 73 chr12 125605096 125605335 -18181120 + MLT1D LTR MaLR 214 439 -66 2153 105 7 0 chr12 125605335 125605612 -18180843 - AluSx SINE Alu -19 293 15 2223 149 48 73 chr12 125605612 125605678 -18180777 + MLT1D LTR MaLR 439 505 0 2074 130 17 0 chr12 125605753 125606045 -18180410 - AluJo SINE Alu -15 297 1 1165 108 85 54 chr12 125606165 125606424 -18180031 - L1MA4 LINE L1 -6 6294 6028 1850 117 68 18 chr12 125606433 125606714 -18179741 - AluSx SINE Alu -17 295 1 1349 191 143 0 chr12 125606714 125606965 -18179490 - AluJo SINE Alu -15 287 1 2587 168 43 6 chr12 125607021 125607510 -18178945 - L1MB8 LINE L1 0 6178 5672 234 330 59 40 chr12 125607641 125607832 -18178623 - MIR SINE MIR -30 232 37 184 143 0 0 chr12 125608161 125608189 -18178266 + MER5A DNA MER1_type 118 145 -44 2214 122 0 0 chr12 125608193 125608488 -18177967 + AluSx SINE Alu 1 295 -17 1988 145 24 0 chr12 125609642 125609932 -18176523 - AluSx SINE Alu -14 298 2 206 182 0 23 chr12 125609934 125609978 -18176477 - MIR SINE MIR -58 150 108 572 131 12 0 chr12 125610108 125610192 -18176263 + AluS SINE Alu 3 87 -226 235 244 104 68 chr12 125610353 125610469 -18175986 + MIR SINE MIR 19 145 -63 435 208 48 48 chr12 125611312 125611437 -18175018 + MER5B DNA MER1_type 6 130 -48 26 30 0 0 chr12 125611437 125611470 -18174985 + AT_rich Low_complexity Low_complexity 1 33 0 2246 105 0 39 chr12 125611470 125611775 -18174680 - AluSx SINE Alu -19 293 1 253 149 21 0 chr12 125611782 125611829 -18174626 + MER5B DNA MER1_type 126 173 -5 206 218 316 45 chr12 125611838 125611971 -18174484 + MER5B DNA MER1_type 8 176 -2 246 81 0 0 chr12 125612396 125612433 -18174022 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2219 101 0 7 chr12 125612437 125612725 -18173730 - AluSq SINE Alu -27 286 1 1752 235 3 6 chr12 125612730 125613041 -18173414 - AluJb SINE Alu -2 310 1 312 347 45 40 chr12 125613491 125613563 -18172892 - L1ME LINE L1 -627 5494 5424 2274 76 10 36 chr12 125613563 125613866 -18172589 - AluSq SINE Alu -18 295 1 312 347 45 40 chr12 125613866 125613969 -18172486 - L1ME LINE L1 -697 5424 5318 504 311 136 24 chr12 125614085 125614467 -18171988 - L1ME LINE L1 -1079 5067 4643 247 306 10 20 chr12 125614541 125614639 -18171816 - L1ME LINE L1 -1537 4609 4513 310 366 49 22 chr12 125614713 125614779 -18171676 + L1MC4a LINE L1 5703 5766 -2042 1970 143 27 0 chr12 125614779 125615079 -18171376 + AluSp SINE Alu 1 308 -5 310 366 49 22 chr12 125615079 125615236 -18171219 + L1MC4a LINE L1 5766 5932 -1876 23 0 0 0 chr12 125616081 125616104 -18170351 + AT_rich Low_complexity Low_complexity 1 23 0 2302 90 0 17 chr12 125616183 125616484 -18169971 - AluSx SINE Alu -16 296 1 2102 112 39 0 chr12 125617152 125617438 -18169017 + AluSq SINE Alu 1 297 -16 2413 98 3 0 chr12 125617449 125617754 -18168701 + AluSp SINE Alu 4 309 -4 233 29 29 0 chr12 125618361 125618395 -18168060 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2123 138 0 0 chr12 125618423 125618727 -18167728 - AluSx SINE Alu -8 304 1 308 33 66 0 chr12 125619545 125619606 -18166849 - AluSp/q SINE Alu 0 303 239 831 224 6 24 chr12 125619908 125620078 -18166377 + FRAM SINE Alu 1 165 -11 271 321 18 46 chr12 125620492 125620526 -18165929 - MER5A DNA MER1_type -71 118 85 1108 231 18 9 chr12 125620526 125620747 -18165708 + MER58A DNA MER1_type 1 223 -1 271 321 18 46 chr12 125620747 125620821 -18165634 - MER5A DNA MER1_type -104 85 13 994 243 86 28 chr12 125621624 125621840 -18164615 + L1MDb LINE L1 886 1088 -5432 2336 113 0 10 chr12 125621840 125622151 -18164304 + AluSx SINE Alu 1 308 -4 994 243 86 28 chr12 125622151 125622462 -18163993 + L1MDb LINE L1 1088 1483 -5037 2105 97 4 0 chr12 125622866 125623171 -18163284 + AluSx SINE Alu 3 308 0 180 0 0 0 chr12 125623360 125623380 -18163075 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1831 119 14 14 chr12 125624451 125624728 -18161727 + AluSq SINE Alu 19 295 -18 605 298 22 11 chr12 125624952 125625133 -18161322 + L3 LINE CR1 824 1006 -571 902 139 28 72 chr12 125625167 125625347 -18161108 + AluJb SINE Alu 1 172 -140 626 234 136 11 chr12 125625968 125626152 -18160303 + MER63A DNA MER1_type 1 207 -3 35 24 0 0 chr12 125626372 125626414 -18160041 + GC_rich Low_complexity Low_complexity 1 42 0 259 84 76 25 chr12 125626414 125626533 -18159922 + (CGGG)n Simple_repeat Simple_repeat 3 127 0 74 33 0 0 chr12 125626533 125626623 -18159832 + GC_rich Low_complexity Low_complexity 1 90 0 1779 157 10 7 chr12 125627440 125627745 -18158710 - AluSg SINE Alu -3 307 2 773 278 12 8 chr12 125628498 125628739 -18157716 + MLT1D LTR MaLR 262 503 -2 1161 167 0 0 chr12 125628740 125628920 -18157535 + AluJb SINE Alu 133 312 0 2211 126 0 0 chr12 125628938 125629217 -18157238 + AluSg SINE Alu 1 279 -31 180 0 0 0 chr12 125629217 125629237 -18157218 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 * 207 0 0 0 chr12 125629236 125629259 -18157196 + (CA)n Simple_repeat Simple_repeat 2 24 0 2211 126 0 0 chr12 125629237 125629273 -18157182 + AluSg SINE Alu 278 294 -16 2088 87 69 7 chr12 125629278 125629566 -18156889 + AluSq SINE Alu 1 306 -7 1624 158 87 6 chr12 125629614 125629936 -18156519 - MLT1D LTR MaLR -157 348 1 210 269 0 0 chr12 125630017 125630069 -18156386 - L2 LINE L2 0 3313 3262 2120 105 0 7 chr12 125630126 125630459 -18155996 - AluSx SINE Alu 0 333 3 438 253 108 33 chr12 125630676 125630949 -18155506 + LTR16A LTR ERVL 15 356 -94 323 202 42 24 chr12 125630976 125631144 -18155311 + CT-rich Low_complexity Low_complexity 4 174 0 597 175 0 38 chr12 125631176 125631336 -18155119 + C-rich Low_complexity Low_complexity 1 154 0 279 0 0 0 chr12 125631716 125631747 -18154708 + (TG)n Simple_repeat Simple_repeat 1 31 0 2041 136 3 0 chr12 125632053 125632347 -18154108 - AluSx SINE Alu -17 295 1 893 209 36 0 chr12 125632540 125632736 -18153719 + MER20 DNA MER1_type 17 219 0 1959 143 10 26 chr12 125633295 125633602 -18152853 - AluJo SINE Alu -10 302 1 264 30 0 0 chr12 125634265 125634298 -18152157 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 1857 134 7 11 chr12 125634305 125634582 -18151873 - AluSx SINE Alu -36 276 1 2071 124 10 3 chr12 125635108 125635399 -18151056 + AluSx SINE Alu 1 293 -19 305 321 64 25 chr12 125635561 125635698 -18150757 - MIR3 SINE MIR -45 163 23 183 189 27 0 chr12 125636419 125636456 -18149999 + L2 LINE L2 3264 3301 -12 321 68 0 0 chr12 125638158 125638202 -18148253 + (CA)n Simple_repeat Simple_repeat 1 44 0 2444 88 13 0 chr12 125638751 125639057 -18147398 - AluSx SINE Alu -2 310 1 248 274 16 0 chr12 125639058 125639120 -18147335 + L2 LINE L2 3224 3286 -27 201 39 0 0 chr12 125639125 125639151 -18147304 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2082 148 0 7 chr12 125639194 125639499 -18146956 - AluSx SINE Alu -6 306 4 2479 74 0 0 chr12 125639509 125639806 -18146649 - AluY SINE Alu -14 297 1 2024 148 0 3 chr12 125639806 125640103 -18146352 - AluJo SINE Alu -16 296 1 2164 127 7 0 chr12 125640747 125641039 -18145416 + AluSx SINE Alu 1 294 -18 732 269 11 6 chr12 125641118 125641293 -18145162 - MER5A DNA MER1_type -7 182 7 2461 73 0 16 chr12 125642302 125642605 -18143850 - AluSc SINE Alu -11 298 1 2102 134 0 0 chr12 125642608 125642931 -18143524 - AluSq SINE Alu 0 323 1 244 231 22 0 chr12 125643024 125643090 -18143365 - MER91 DNA MER1_type -98 42 1 457 313 23 27 chr12 125643661 125643923 -18142532 - LTR16C LTR ERVL -18 473 213 1923 125 25 7 chr12 125644448 125644773 -18141682 - AluSx SINE Alu 0 330 1 1093 104 0 0 chr12 125644773 125644908 -18141547 - AluSq/x SINE Alu -177 135 1 1819 137 0 88 chr12 125644942 125645284 -18141171 - AluJb SINE Alu 0 312 1 1143 207 37 7 chr12 125645289 125645559 -18140896 - L1MB4 LINE L1 0 6180 5903 2119 98 8 0 chr12 125645593 125645859 -18140596 - AluSx SINE Alu -25 287 20 216 268 0 0 chr12 125646334 125646405 -18140050 + (CA)n Simple_repeat Simple_repeat 1 71 0 235 220 20 0 chr12 125646520 125646570 -18139885 + MIR SINE MIR 19 69 -193 2297 99 3 0 chr12 125646590 125646884 -18139571 - AluSg SINE Alu -15 295 1 546 158 0 0 chr12 125646890 125646985 -18139470 - AluSg/x SINE Alu -1 311 217 2189 104 4 0 chr12 125647000 125647278 -18139177 - AluSq SINE Alu -34 279 1 381 242 242 0 chr12 125647284 125647412 -18139043 + MIR SINE MIR 101 259 -3 376 205 26 0 chr12 125647518 125647596 -18138859 + L2 LINE L2 3220 3299 -14 2336 83 3 13 chr12 125647596 125647909 -18138546 - AluY SINE Alu -1 310 1 744 219 55 0 chr12 125648716 125648899 -18137556 - MER20 DNA MER1_type 0 219 27 2237 105 10 13 chr12 125648947 125649253 -18137202 - AluSx SINE Alu -7 305 1 297 261 252 8 chr12 125649298 125649417 -18137038 - MER5A DNA MER1_type -7 182 35 254 236 273 0 chr12 125649319 125649429 -18137026 + MER5A DNA MER1_type 40 179 -10 * 285 350 0 0 chr12 125649690 125649770 -18136685 + L2 LINE L2 3147 3226 -46 1652 204 0 16 chr12 125651072 125651386 -18135069 + AluJo SINE Alu 4 312 0 291 104 30 30 chr12 125651392 125651459 -18134996 + GA-rich Low_complexity Low_complexity 2 68 0 535 251 123 50 chr12 125651504 125651683 -18134772 - MIR SINE MIR -62 200 9 2416 76 0 13 chr12 125652102 125652405 -18134050 - AluY SINE Alu -12 299 1 593 259 35 21 chr12 125652550 125652867 -18133588 + LTR16B LTR ERVL 85 464 0 387 0 0 0 chr12 125652887 125652930 -18133525 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2281 89 0 0 chr12 125652931 125653213 -18133242 - AluSx SINE Alu -30 282 1 1697 177 27 7 chr12 125653240 125653534 -18132921 - AluJo SINE Alu -8 304 5 594 243 23 34 chr12 125653645 125653822 -18132633 - HAL1 LINE L1 -10 2497 2323 2820 125 0 35 chr12 125654122 125654369 -18132086 + L1MA3 LINE L1 5833 6056 -249 1766 129 61 31 chr12 125654369 125654663 -18131792 + AluSx SINE Alu 1 303 -9 2820 125 0 35 chr12 125654663 125654904 -18131551 + L1MA3 LINE L1 6056 6304 -1 356 267 107 15 chr12 125655138 125655269 -18131186 - MER91B DNA MER1_type -11 179 37 728 248 160 5 chr12 125655853 125656059 -18130396 - MIR SINE MIR -21 241 4 1134 147 12 0 chr12 125656182 125656352 -18130103 - FRAM SINE Alu 0 176 5 1450 84 5 39 chr12 125656359 125656562 -18129893 - AluSp SINE Alu -8 305 110 2529 81 0 3 chr12 125656694 125657001 -18129454 + AluSq SINE Alu 1 306 -7 659 294 44 40 chr12 125657995 125658076 -18128379 + L2 LINE L2 1790 1869 -1445 243 0 0 0 chr12 125658076 125658103 -18128352 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1744 188 3 0 chr12 125658105 125658387 -18128068 - AluJb SINE Alu -29 283 1 659 294 44 40 chr12 125658387 125658550 -18127905 + L2 LINE L2 1869 2038 -1276 2119 125 0 0 chr12 125658930 125659210 -18127245 + AluSx SINE Alu 1 280 -32 1902 117 96 0 chr12 125660319 125660600 -18125855 - AluSx SINE Alu -4 308 1 571 262 249 3 chr12 125660926 125661419 -18125036 - L2 LINE L2 -1 3312 2687 337 312 0 11 chr12 125661420 125661513 -18124942 + MER61E LTR ERV1 255 346 -223 * 444 241 63 28 chr12 125661504 125661673 -18124782 + LTR19C LTR ERV1 324 486 -293 2180 118 0 0 chr12 125661673 125661984 -18124471 - AluSg SINE Alu 0 311 1 444 241 63 28 chr12 125661984 125662021 -18124434 + LTR19C LTR ERV1 486 692 -87 455 318 134 19 chr12 125662103 125662364 -18124091 - L2 LINE L2 -659 2655 2365 452 270 35 0 chr12 125663483 125663598 -18122857 + L3 LINE CR1 613 731 -846 416 315 48 6 chr12 125663726 125663891 -18122564 + MIR SINE MIR 83 254 -8 * 558 273 21 7 chr12 125663860 125664036 -18122419 - MIR SINE MIR -6 202 19 2387 101 0 0 chr12 125664099 125664407 -18122048 - AluSg SINE Alu -2 308 1 761 333 124 66 chr12 125664726 125665483 -18120972 + L3 LINE CR1 741 1541 -36 694 196 0 0 chr12 125665942 125666054 -18120401 + FLAM_A SINE Alu 4 115 -18 570 54 0 0 chr12 125666691 125666765 -18119690 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 224 119 0 24 chr12 125666770 125666812 -18119643 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 825 194 0 0 chr12 125666828 125667088 -18119367 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 188 300 0 0 chr12 125667095 125667145 -18119310 - L2 LINE L2 0 3313 3264 1903 149 30 14 chr12 125667417 125667712 -18118743 - AluSx SINE Alu -12 300 1 1640 167 3 16 chr12 125667813 125668119 -18118336 + L1MB8 LINE L1 5734 6035 -143 471 239 85 0 chr12 125668553 125668683 -18117772 + MER3 DNA MER1_type 1 141 -68 24 0 0 0 chr12 125668704 125668728 -18117727 + AT_rich Low_complexity Low_complexity 1 24 0 1877 124 4 4 chr12 125668826 125669113 -18117342 + AluSx SINE Alu 18 304 0 792 199 0 7 chr12 125669472 125669608 -18116847 - AluJo SINE Alu -176 136 2 1844 199 5 17 chr12 125669640 125670046 -18116409 - L1MB7 LINE L1 -23 6161 5761 318 188 0 75 chr12 125670046 125670126 -18116329 + MER3 DNA MER1_type 136 209 0 250 226 0 0 chr12 125670083 125670136 -18116319 - MER3 DNA MER1_type -119 90 38 * 792 163 87 11 chr12 125670758 125670924 -18115531 + MLT1B LTR MaLR 1 184 -206 1882 67 0 0 chr12 125670924 125671149 -18115306 + AluY SINE Alu 87 311 0 792 163 87 11 chr12 125671149 125671166 -18115289 + MLT1B LTR MaLR 184 198 -192 361 103 29 0 chr12 125671168 125671236 -18115219 + CT-rich Low_complexity Low_complexity 2 71 0 646 224 0 0 chr12 125671237 125671362 -18115093 + MLT1B LTR MaLR 214 338 -52 7899 17 6 0 chr12 125671373 125672287 -18114168 - L1PA3 LINE L1 -4 6151 5237 271 133 89 0 chr12 125672317 125672362 -18114093 + MLT1B LTR MaLR 342 390 0 2163 140 0 0 chr12 125673496 125673803 -18112652 - AluSq SINE Alu -6 307 1 2144 120 51 20 chr12 125674145 125674496 -18111959 + MLT1A1 LTR MaLR 3 364 -1 1416 178 0 64 chr12 125674640 125674904 -18111551 - AluJo SINE Alu -65 247 1 2020 154 0 3 chr12 125674913 125675205 -18111250 - AluJb SINE Alu -20 292 2 1513 183 37 42 chr12 125675205 125675588 -18110867 - MER58D DNA MER1_type -5 381 1 1528 143 8 0 chr12 125675674 125675918 -18110537 + L1MC1 LINE L1 6088 6333 0 473 324 0 38 chr12 125676254 125676439 -18110016 + MER5B DNA MER1_type 1 178 0 2166 118 3 3 chr12 125677287 125677576 -18108879 - AluSg SINE Alu -21 289 1 615 109 16 55 chr12 125677576 125677704 -18108751 + L1MB5 LINE L1 6021 6143 -31 894 136 0 0 chr12 125677722 125677840 -18108615 + FRAM SINE Alu 21 138 -38 511 327 117 25 chr12 125677857 125678328 -18108127 + L2 LINE L2 2025 2538 -776 257 200 0 0 chr12 125678295 125678345 -18108110 + MIR SINE MIR 104 153 -109 * 234 130 43 0 chr12 125678373 125678419 -18108036 - MLT1H LTR MaLR -3 546 499 228 291 28 95 chr12 125678419 125678598 -18107857 - L2 LINE L2 -46 3267 3101 274 114 63 13 chr12 125678629 125678708 -18107747 + CT-rich Low_complexity Low_complexity 2 84 0 2396 110 3 0 chr12 125678710 125679020 -18107435 - AluSq SINE Alu -2 311 1 1033 55 18 18 chr12 125679022 125679186 -18107269 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 2332 86 3 3 chr12 125679187 125679479 -18106976 - AluSp SINE Alu -21 292 1 1792 156 37 14 chr12 125679481 125679776 -18106679 - AluJb SINE Alu -10 302 1 428 212 66 29 chr12 125680080 125680217 -18106238 - MER67C LTR ERV1 -553 157 16 3833 145 22 77 chr12 125680286 125680449 -18106006 - LTR39 LTR ERV1 -4 779 609 2249 108 0 16 chr12 125680449 125680755 -18105700 - AluSx SINE Alu -11 301 1 3833 145 22 77 chr12 125680755 125680913 -18105542 - LTR39 LTR ERV1 -174 609 444 2233 101 10 3 chr12 125680913 125681211 -18105244 - AluSc SINE Alu -9 300 1 3833 145 22 77 chr12 125681211 125681665 -18104790 - LTR39 LTR ERV1 -339 444 46 459 277 19 13 chr12 125681693 125681852 -18104603 + MER90 LTR ERV1 404 563 -12 969 135 43 65 chr12 125681931 125682072 -18104383 + LTR49 LTR ERV1 371 507 -88 1480 176 0 52 chr12 125682072 125682248 -18104207 - AluJo SINE Alu -2 310 153 2380 95 0 7 chr12 125682248 125682544 -18103911 - AluSq SINE Alu -19 294 1 1480 176 0 52 chr12 125682544 125682656 -18103799 - AluJo SINE Alu -159 153 37 969 135 43 65 chr12 125682656 125682744 -18103711 + LTR49 LTR ERV1 507 595 0 264 262 126 55 chr12 125682796 125682979 -18103476 + L2 LINE L2 2916 3111 -161 257 207 17 0 chr12 125683041 125683099 -18103356 - MER69 DNA AcHobo 0 2526 2468 * 281 182 0 0 chr12 125683096 125683151 -18103304 - AluSx SINE Alu -1 307 253 2078 134 0 0 chr12 125683153 125683428 -18103027 - AluSx SINE Alu -37 275 1 221 226 103 75 chr12 125683930 125684076 -18102379 + MIR SINE MIR 1 150 -112 235 350 66 15 chr12 125684106 125684303 -18102152 - MIR SINE MIR 0 262 56 51 65 0 0 chr12 125684601 125684694 -18101761 + GC_rich Low_complexity Low_complexity 1 93 0 233 257 14 14 chr12 125684865 125684939 -18101516 + (CCG)n Simple_repeat Simple_repeat 2 75 0 251 258 113 4 chr12 125685249 125685361 -18101094 - MIR SINE MIR -45 217 87 1044 112 13 0 chr12 125685373 125685525 -18100930 - AluSg/x SINE Alu -14 296 143 2174 69 0 4 chr12 125685525 125685786 -18100669 - AluSq SINE Alu -53 260 1 661 149 41 0 chr12 125685927 125686048 -18100407 - MER34B LTR ERV1 -439 126 1 248 336 47 9 chr12 125686049 125686156 -18100299 - MIR SINE MIR -101 161 51 180 220 68 51 chr12 125686236 125686295 -18100160 - L2 LINE L2 -39 3233 3174 1459 83 0 0 chr12 125686454 125686512 -18099943 + (G)n Simple_repeat Simple_repeat 1 238 0 1459 83 0 0 chr12 125686512 125686692 -18099763 + (G)n Simple_repeat Simple_repeat 1 180 0 431 234 17 23 chr12 125686725 125686900 -18099555 + GA-rich Low_complexity Low_complexity 4 177 0 184 208 0 21 chr12 125686918 125686966 -18099489 + GA-rich Low_complexity Low_complexity 1 47 0 819 142 8 8 chr12 125687139 125687259 -18099196 - FLAM_C SINE Alu -23 120 1 653 177 73 0 chr12 125687492 125687616 -18098839 - FLAM_A SINE Alu 0 133 1 2436 77 7 0 chr12 125687680 125687978 -18098477 - AluSq SINE Alu -12 301 2 291 239 53 53 chr12 125687982 125688095 -18098360 - MIR SINE MIR -51 211 99 252 344 0 11 chr12 125689031 125689121 -18097334 + GA-rich Low_complexity Low_complexity 2 90 0 340 257 9 44 chr12 125689590 125689703 -18096752 - MER103 DNA DNA -3 163 55 2658 58 0 0 chr12 125689714 125690025 -18096430 + AluY SINE Alu 1 311 0 25 65 0 0 chr12 125690665 125690711 -18095744 + AT_rich Low_complexity Low_complexity 1 46 0 2236 109 0 34 chr12 125690762 125691082 -18095373 + AluSx SINE Alu 1 309 -3 372 277 42 8 chr12 125691217 125691336 -18095119 - L2 LINE L2 -2 3311 3189 370 317 10 0 chr12 125691437 125691541 -18094914 + L2 LINE L2 3163 3267 -5 811 186 0 0 chr12 125691551 125691680 -18094775 + FLAM_C SINE Alu 5 133 0 756 101 23 0 chr12 125692282 125692411 -18094044 + (GA)n Simple_repeat Simple_repeat 1 132 0 511 293 66 66 chr12 125692771 125693044 -18093411 + L2 LINE L2 2962 3234 -38 258 105 0 0 chr12 125693090 125693128 -18093327 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 776 134 0 134 chr12 125693227 125693391 -18093064 + FLAM_C SINE Alu 2 143 0 273 218 18 0 chr12 125693391 125693446 -18093009 - MER63 DNA MER1_type -100 736 681 456 19 0 0 chr12 125693446 125693499 -18092956 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1064 185 0 6 chr12 125694152 125694330 -18092125 - AluJ SINE Alu -16 296 120 610 185 11 18 chr12 125694343 125694604 -18091851 + CT-rich Low_complexity Low_complexity 1 259 0 1753 124 94 4 chr12 125694604 125694879 -18091576 - AluSq SINE Alu -13 300 1 723 185 8 0 chr12 125694902 125695021 -18091434 - AluJ SINE Alu -182 120 1 467 271 33 0 chr12 125695053 125695175 -18091280 + MER33 DNA MER1_type 6 131 -193 433 240 0 24 chr12 125695508 125695633 -18090822 - MER113 DNA MER1_type? -96 425 304 2584 53 0 28 chr12 125695655 125695975 -18090480 - AluY SINE Alu 0 311 1 2489 75 2 2 chr12 125695989 125696402 -18090053 - L1PB1 LINE L1 0 6151 5657 2228 126 3 3 chr12 125696405 125696714 -18089741 - AluSx SINE Alu -3 309 1 1953 92 15 0 chr12 125696772 125697032 -18089423 - AluSg SINE Alu -12 298 35 2300 110 3 0 chr12 125697232 125697532 -18088923 + AluSx SINE Alu 1 301 -11 544 266 4 41 chr12 125697929 125698152 -18088303 + MIR3 SINE MIR 8 216 -46 304 259 88 34 chr12 125698386 125698533 -18087922 - L1MCa LINE L1 -4928 1498 1344 22 0 0 30 chr12 125698678 125698697 -18087758 + AT_rich Low_complexity Low_complexity 1 20 -12 1053 32 0 0 chr12 125698697 125698820 -18087635 - L1PA3 LINE L1 -3 6152 6030 22 0 0 30 chr12 125698820 125698833 -18087622 + AT_rich Low_complexity Low_complexity 20 32 0 625 208 0 0 chr12 125698963 125699083 -18087372 + MER3 DNA MER1_type 1 120 -89 291 167 0 0 chr12 125699098 125699146 -18087309 + MER5B DNA MER1_type 1 48 -130 353 216 0 0 chr12 125699163 125699237 -18087218 + MER3 DNA MER1_type 132 205 -4 448 262 214 7 chr12 125699256 125699401 -18087054 + MER5A DNA MER1_type 9 183 -6 2191 120 3 0 chr12 125699403 125699694 -18086761 + AluSq SINE Alu 1 292 -21 473 324 0 38 chr12 125700544 125700729 -18085726 - MER5B DNA MER1_type 0 178 1 1528 143 8 0 chr12 125701065 125701309 -18085146 - L1MC1 LINE L1 0 6333 6088 1530 180 37 42 chr12 125701395 125701778 -18084677 + MER58D DNA MER1_type 1 381 -5 2035 151 0 3 chr12 125701778 125702070 -18084385 + AluJb SINE Alu 2 292 -20 1410 177 0 68 chr12 125702079 125702344 -18084111 + AluJo SINE Alu 1 247 -65 2170 117 51 20 chr12 125702488 125702839 -18083616 - MLT1A1 LTR MaLR -1 364 3 2167 137 0 0 chr12 125703181 125703487 -18082968 + AluSq SINE Alu 1 306 -7 271 133 89 0 chr12 125704621 125704666 -18081789 - MLT1B LTR MaLR 0 390 342 7874 18 1 0 chr12 125704696 125705610 -18080845 + L1PA3 LINE L1 5237 6151 -4 646 224 0 0 chr12 125705621 125705746 -18080709 - MLT1B LTR MaLR -52 338 214 361 103 29 0 chr12 125705747 125705815 -18080640 + GA-rich Low_complexity Low_complexity 2 71 0 792 163 87 11 chr12 125705817 125705834 -18080621 - MLT1B LTR MaLR -192 198 184 1882 67 0 0 chr12 125705834 125706059 -18080396 - AluY SINE Alu 0 311 87 792 163 87 11 chr12 125706059 125706225 -18080230 - MLT1B LTR MaLR -206 184 1 333 175 0 75 chr12 125706857 125706937 -18079518 - MER3 DNA MER1_type 0 209 136 1844 199 5 17 chr12 125706937 125707343 -18079112 + L1MB7 LINE L1 5761 6161 -23 792 199 0 7 chr12 125707375 125707511 -18078944 + AluJo SINE Alu 2 136 -176 1853 128 4 4 chr12 125707870 125708157 -18078298 - AluSx SINE Alu 0 304 18 24 0 0 0 chr12 125708255 125708279 -18078176 + AT_rich Low_complexity Low_complexity 1 24 0 471 239 85 0 chr12 125708300 125708430 -18078025 - MER3 DNA MER1_type -68 141 1 1640 167 3 16 chr12 125708864 125709170 -18077285 - L1MB8 LINE L1 -143 6035 5734 1903 149 30 14 chr12 125709271 125709566 -18076889 + AluSx SINE Alu 1 300 -12 188 300 0 0 chr12 125709838 125709888 -18076567 + L2 LINE L2 3264 3313 0 825 194 0 0 chr12 125709895 125710155 -18076300 + (TGGA)n Simple_repeat Simple_repeat 1 260 0 224 119 0 24 chr12 125710171 125710213 -18076242 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 534 57 0 0 chr12 125710218 125710288 -18076167 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 379 245 11 11 chr12 125711069 125711163 -18075292 - MER94 DNA DNA -12 122 29 2409 92 10 0 chr12 125711163 125711458 -18074997 + AluSq SINE Alu 1 298 -15 2232 113 0 3 chr12 125712087 125712387 -18074068 - AluSx SINE Alu -13 299 1 2537 52 0 26 chr12 125712445 125712752 -18073703 - AluY SINE Alu -12 299 1 27 49 0 0 chr12 125712788 125712829 -18073626 + AT_rich Low_complexity Low_complexity 1 41 0 665 300 100 16 chr12 125712885 125713292 -18073163 - L2 LINE L2 -111 3202 2754 2460 85 0 3 chr12 125713316 125713621 -18072834 - AluSc SINE Alu -5 304 1 360 223 64 11 chr12 125713772 125713866 -18072589 - MIR SINE MIR -62 146 48 2173 108 0 65 chr12 125714609 125714933 -18071522 + AluSx SINE Alu 1 303 -9 2286 92 10 0 chr12 125715160 125715455 -18071000 - AluSg SINE Alu -12 298 1 354 291 34 0 chr12 125715468 125715585 -18070870 + MIR SINE MIR 18 138 -124 302 312 204 23 chr12 125715866 125716087 -18070368 + MIR SINE MIR 2 262 0 312 371 23 23 chr12 125716547 125716679 -18069776 + MER5A DNA MER1_type 58 189 0 424 289 117 91 chr12 125716900 125717208 -18069247 + L2 LINE L2 2957 3272 0 336 164 0 0 chr12 125717298 125717359 -18069096 + MER96B DNA MER1_type? 1 61 -356 226 80 520 0 chr12 125717367 125717417 -18069038 - MADE1 DNA Mariner 0 80 5 372 56 0 19 chr12 125717444 125717498 -18068957 - MADE1 DNA Mariner -27 53 1 28 79 0 0 chr12 125717525 125717588 -18068867 + AT_rich Low_complexity Low_complexity 1 63 0 226 114 0 114 chr12 125717666 125717736 -18068719 - MER96B DNA MER1_type? -238 179 118 2944 149 21 19 chr12 125717736 125718368 -18068087 + L1MA5A LINE L1 5018 5657 -640 2414 97 7 3 chr12 125718368 125718678 -18067777 + AluSx SINE Alu 1 311 -1 2944 149 21 19 chr12 125718678 125718815 -18067640 + L1MA5A LINE L1 5657 5792 -505 1395 72 0 72 chr12 125718854 125719076 -18067379 + L1MA1 LINE L1 6097 6302 0 2941 139 26 6 chr12 125719177 125719675 -18066780 + L1MA5A LINE L1 5790 6297 0 235 191 45 100 chr12 125719682 125719792 -18066663 - MER96B DNA MER1_type? -288 129 26 6319 77 9 17 chr12 125719926 125720173 -18066282 - L1MA1 LINE L1 -1 6301 6054 2121 132 0 0 chr12 125720173 125720460 -18065995 - AluSx SINE Alu -20 292 6 6319 77 9 17 chr12 125720460 125721105 -18065350 - L1MA1 LINE L1 -248 6054 5416 2050 143 3 31 chr12 125721185 125721506 -18064949 + AluJb SINE Alu 1 312 0 630 76 0 0 chr12 125722162 125722241 -18064214 + MADE1 DNA Mariner 1 79 -1 506 144 36 0 chr12 125722499 125722610 -18063845 - MER33 DNA MER1_type -4 359 245 50 104 0 0 chr12 125722683 125722866 -18063589 + AT_rich Low_complexity Low_complexity 1 183 0 723 156 99 77 chr12 125722866 125722979 -18063476 - MER33 DNA MER1_type -2323 262 153 2243 89 30 10 chr12 125722979 125723281 -18063174 + AluSc SINE Alu 1 308 -1 723 156 99 77 chr12 125723281 125723439 -18063016 - MER33 DNA MER1_type -2432 153 1 366 350 33 10 chr12 125724262 125724423 -18062032 + MIR SINE MIR 34 209 -53 2434 77 3 3 chr12 125725123 125725423 -18061032 + AluSg SINE Alu 2 301 -9 2297 96 13 3 chr12 125725436 125725739 -18060716 + AluSc SINE Alu 1 306 -3 763 203 59 20 chr12 125725952 125726154 -18060301 + MER113 DNA MER1_type? 235 444 -77 189 0 0 0 chr12 125726919 125726940 -18059515 + (TA)n Simple_repeat Simple_repeat 2 22 0 1906 138 7 26 chr12 125726940 125727244 -18059211 - AluJb SINE Alu -14 298 1 2358 123 3 0 chr12 125727457 125727766 -18058689 + AluSx SINE Alu 1 310 -2 2291 109 3 3 chr12 125728648 125728959 -18057496 + AluSx SINE Alu 1 311 -1 762 291 51 0 chr12 125730307 125730544 -18055911 - MER102a DNA MER1_type -8 322 74 2245 125 3 0 chr12 125730813 125731117 -18055338 + AluSx SINE Alu 1 305 -7 440 281 25 83 chr12 125731117 125731313 -18055142 - L1ME3 LINE L1 -233 5929 5758 2197 138 0 3 chr12 125731313 125731618 -18054837 - AluSx SINE Alu -8 304 1 440 281 25 83 chr12 125731618 125731745 -18054710 - L1ME3 LINE L1 -404 5758 5625 1954 223 86 42 chr12 125732450 125732975 -18053480 + MLT1H LTR MaLR 1 548 -1 279 210 0 16 chr12 125733221 125733283 -18053172 + MER20 DNA MER1_type 1 61 -158 3484 135 33 18 chr12 125733283 125733398 -18053057 - LTR19B LTR ERV1 0 580 468 1066 56 49 0 chr12 125733398 125733540 -18052915 - L1PA8 LINE L1 -5 6167 6019 3484 135 33 18 chr12 125733540 125733995 -18052460 - LTR19B LTR ERV1 -112 468 1 741 158 53 7 chr12 125733995 125734142 -18052313 + MER20 DNA MER1_type 56 209 -10 211 254 0 36 chr12 125734584 125734639 -18051816 + L2 LINE L2 3220 3272 0 2142 122 0 17 chr12 125734810 125735096 -18051359 + AluSx SINE Alu 1 304 -8 192 35 0 35 chr12 125735096 125735125 -18051330 + (TAAAA)n Simple_repeat Simple_repeat 2 80 0 322 250 0 0 chr12 125735168 125735244 -18051211 + L2 LINE L2 2893 2968 -346 2201 134 0 7 chr12 125735409 125735715 -18050740 - AluJo SINE Alu -8 304 1 530 270 11 27 chr12 125735936 125736121 -18050334 - L2 LINE L2 0 3313 3132 369 288 22 14 chr12 125736157 125736296 -18050159 - L2 LINE L2 -358 2956 2817 710 189 39 3 chr12 125736415 125736601 -18049854 - MIR SINE MIR -7 255 2 479 339 88 50 chr12 125736621 125736963 -18049492 - L2 LINE L2 0 3272 2918 212 310 10 40 chr12 125737606 125737706 -18048749 - L2 LINE L2 -258 3014 2918 241 302 112 12 chr12 125737985 125738154 -18048301 + L2 LINE L2 2449 2634 -680 23 33 0 0 chr12 125738160 125738190 -18048265 + AT_rich Low_complexity Low_complexity 1 30 0 325 202 0 16 chr12 125738254 125738378 -18048077 + (TTA)n Simple_repeat Simple_repeat 1 122 0 200 245 0 57 chr12 125739712 125739765 -18046690 - L2 LINE L2 -9 3304 3255 1048 231 53 33 chr12 125739854 125740153 -18046302 + MER58B DNA MER1_type 37 341 0 193 295 36 143 chr12 125740169 125740235 -18046220 + L2 LINE L2 2982 3053 -260 2280 93 3 39 chr12 125740235 125740546 -18045909 - AluSx SINE Alu -7 305 6 193 295 36 143 chr12 125740546 125740835 -18045620 + L2 LINE L2 3053 3299 -14 1291 244 18 58 chr12 125740847 125740885 -18045570 + MLT1A2 LTR MaLR 8 46 -328 3333 80 9 4 chr12 125740885 125741336 -18045119 + MLT2A2 LTR ERVL 1 453 0 1291 244 18 58 chr12 125741336 125741679 -18044776 + MLT1A2 LTR MaLR 46 374 0 2285 107 3 0 chr12 125742024 125742314 -18044141 - AluSp SINE Alu -22 291 1 3387 106 27 8 chr12 125742573 125743090 -18043365 - MER1A DNA MER1_type 0 527 1 1629 180 158 36 chr12 125743090 125743502 -18042953 + MLT1C LTR MaLR 1 462 -5 2584 46 13 3 chr12 125743980 125744285 -18042170 + AluY SINE Alu 1 308 -3 198 0 0 0 chr12 125744305 125744327 -18042128 + (TC)n Simple_repeat Simple_repeat 2 23 0 2077 123 17 10 chr12 125745756 125746049 -18040406 - AluSx SINE Alu -17 295 1 297 332 45 19 chr12 125746066 125746283 -18040172 - MIR3 SINE MIR -10 252 4 246 135 0 96 chr12 125746533 125746585 -18039870 - MIR SINE MIR 0 262 216 745 236 67 10 chr12 125746607 125746802 -18039653 + MIR SINE MIR 46 251 -11 193 215 183 54 chr12 125746837 125746930 -18039525 - MIR SINE MIR -60 202 98 2478 53 3 3 chr12 125746937 125747237 -18039218 + AluY SINE Alu 1 300 -11 316 342 87 27 chr12 125747331 125747629 -18038826 + L2 LINE L2 2939 3254 -18 311 333 0 0 chr12 125747950 125748055 -18038400 - L3b LINE CR1 -173 1410 1306 2488 63 0 10 chr12 125748227 125748529 -18037926 + AluY SINE Alu 1 299 -12 2062 139 3 3 chr12 125748837 125749138 -18037317 - AluSx SINE Alu -11 301 1 2400 95 0 0 chr12 125749671 125749966 -18036489 - AluSx SINE Alu -17 295 1 1640 174 7 17 chr12 125750401 125750688 -18035767 - AluJb SINE Alu -6 306 23 1681 138 8 0 chr12 125750841 125751080 -18035375 + AluSx SINE Alu 3 243 -69 225 0 0 0 chr12 125751099 125751124 -18035331 + (TAA)n Simple_repeat Simple_repeat 2 26 0 575 211 60 150 chr12 125751124 125751330 -18035125 - Charlie8 DNA MER1_type -65 276 53 1643 153 6 91 chr12 125751330 125751670 -18034785 + AluJo SINE Alu 1 311 -1 575 211 60 150 chr12 125751670 125751704 -18034751 - Charlie8 DNA MER1_type -288 53 188 2455 85 0 0 chr12 125751704 125751999 -18034456 - AluSg SINE Alu -15 295 1 575 211 60 150 chr12 125751999 125752159 -18034296 - Charlie8 DNA MER1_type -152 189 16 364 298 83 34 chr12 125752838 125753000 -18033455 + L1ME4a LINE L1 5457 5610 -511 2008 142 3 29 chr12 125753000 125753311 -18033144 - AluJb SINE Alu -9 303 1 364 298 83 34 chr12 125753311 125753694 -18032761 + L1ME4a LINE L1 5610 6030 -91 1127 164 13 67 chr12 125753735 125753973 -18032482 - AluJo SINE Alu -3 309 85 2067 136 3 0 chr12 125753973 125754268 -18032187 - AluSx SINE Alu -16 296 1 535 199 73 109 chr12 125755280 125755339 -18031116 - MIR SINE MIR -10 252 192 777 158 0 0 chr12 125755339 125755472 -18030983 - FLAM_C SINE Alu 0 133 1 535 199 73 109 chr12 125755472 125755526 -18030929 - MIR SINE MIR -70 192 138 1627 193 13 23 chr12 125755526 125755826 -18030629 - AluJo SINE Alu -15 297 1 535 199 73 109 chr12 125755826 125755942 -18030513 - MIR SINE MIR -124 138 31 469 250 6 9 chr12 125755961 125756305 -18030150 + (CAT)n Simple_repeat Simple_repeat 1 343 0 310 201 86 101 chr12 125756305 125756410 -18030045 - MIR SINE MIR -124 138 34 1907 142 14 10 chr12 125756410 125756699 -18029756 - AluJo SINE Alu -22 290 1 310 201 86 101 chr12 125756699 125756732 -18029723 - MIR SINE MIR -228 34 2 197 185 108 15 chr12 125757400 125757465 -18028990 + MIR3 SINE MIR 133 203 -5 412 273 130 13 chr12 125757532 125757686 -18028769 - MIR SINE MIR -44 218 47 2187 106 0 0 chr12 125757715 125757989 -18028466 - AluSx SINE Alu -17 295 22 1652 132 8 39 chr12 125758306 125758564 -18027891 - AluSx SINE Alu -9 303 54 446 283 62 7 chr12 125758770 125758915 -18027540 + MIR SINE MIR 2 154 -108 1039 211 0 0 chr12 125759061 125759265 -18027190 + MER3 DNA MER1_type 6 209 0 205 297 162 0 chr12 125759619 125759693 -18026762 + MIR SINE MIR 173 258 -4 315 243 14 0 chr12 125759696 125759770 -18026685 - MIR SINE MIR -114 148 74 2270 121 0 3 chr12 125759978 125760285 -18026170 - AluSx SINE Alu -6 306 1 1053 181 4 40 chr12 125760443 125760669 -18025786 - MER20 DNA MER1_type 0 219 2 400 219 12 154 chr12 125760931 125760994 -18025461 - MER5A DNA MER1_type -2 187 117 1940 148 0 0 chr12 125760994 125761277 -18025178 + AluJo SINE Alu 1 283 -29 400 219 12 154 chr12 125761277 125761382 -18025073 - MER5A DNA MER1_type -72 117 43 22 0 0 0 chr12 125762168 125762190 -18024265 + AT_rich Low_complexity Low_complexity 1 22 0 1666 166 8 4 chr12 125762202 125762455 -18024000 - AluJo SINE Alu -58 254 1 446 285 30 42 chr12 125762989 125763154 -18023301 - MIR3 SINE MIR -16 192 30 1765 205 44 30 chr12 125763244 125763742 -18022713 + MLT1D LTR MaLR 1 505 0 942 299 103 11 chr12 125763803 125764116 -18022339 + L2 LINE L2 2831 3197 -116 2335 98 3 0 chr12 125764116 125764413 -18022042 - AluSx SINE Alu -14 298 1 942 299 103 11 chr12 125764413 125764537 -18021918 + L2 LINE L2 3197 3308 -5 654 213 0 0 chr12 125765003 125765163 -18021292 + CT-rich Low_complexity Low_complexity 4 163 0 218 295 0 25 chr12 125765229 125765351 -18021104 + (CTTG)n Simple_repeat Simple_repeat 3 121 0 240 262 119 67 chr12 125767029 125767239 -18019216 + L2 LINE L2 2871 3091 -181 203 208 38 0 chr12 125767323 125767376 -18019079 + MIR SINE MIR 133 187 -75 23 54 0 0 chr12 125767707 125767744 -18018711 + AT_rich Low_complexity Low_complexity 1 37 0 1914 139 0 8 chr12 125767752 125768019 -18018436 - AluSx SINE Alu -47 265 1 505 221 90 117 chr12 125768128 125768427 -18018028 + L2 LINE L2 3022 3312 -1 1399 111 0 0 chr12 125768645 125768834 -18017621 - AluSg/x SINE Alu -2 310 122 1824 152 13 25 chr12 125768836 125769151 -18017304 - AluSx SINE Alu -1 311 1 233 333 36 33 chr12 125769817 125770039 -18016416 + MIR SINE MIR 3 262 0 274 239 0 28 chr12 125770230 125770301 -18016154 + T-rich Low_complexity Low_complexity 4 72 0 939 324 44 42 chr12 125770369 125771158 -18015297 - L2 LINE L2 -58 3214 2392 327 178 10 10 chr12 125771191 125771382 -18015073 + AluJo SINE Alu 19 302 0 255 125 0 0 chr12 125771382 125771422 -18015033 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 440 325 25 6 chr12 125771590 125771747 -18014708 + MIR SINE MIR 51 210 -52 315 305 0 46 chr12 125772417 125772568 -18013887 + G-rich Low_complexity Low_complexity 1 144 0 266 269 0 0 chr12 125772693 125772786 -18013669 - AluS SINE Alu -208 94 2 569 245 13 90 chr12 125773249 125773482 -18012973 - MER102b DNA MER1_type -45 296 82 1172 205 58 130 chr12 125773930 125774482 -18011973 + MER97a DNA MER1_type? 361 872 -22 267 304 59 0 chr12 125775176 125775278 -18011177 + MIR SINE MIR 128 235 -27 493 301 19 0 chr12 125775647 125775803 -18010652 + LTR16A1 LTR ERVL 299 457 0 27 73 0 0 chr12 125776396 125776451 -18010004 + AT_rich Low_complexity Low_complexity 1 55 0 322 247 59 53 chr12 125776817 125776987 -18009468 - L2 LINE L2 -265 3007 2837 232 176 22 121 chr12 125777212 125777303 -18009152 + Charlie8 DNA MER1_type 82 163 -2254 337 285 12 85 chr12 125777546 125777711 -18008744 - L1MCa LINE L1 -4048 2378 2226 206 203 0 47 chr12 125777713 125777777 -18008678 + CT-rich Low_complexity Low_complexity 2 62 0 1016 130 0 27 chr12 125777901 125778053 -18008402 + (G)n Simple_repeat Simple_repeat 1 327 0 1016 130 0 27 chr12 125778053 125778238 -18008217 + (G)n Simple_repeat Simple_repeat 1 180 0 433 141 24 0 chr12 125778326 125778411 -18008044 + G-rich Low_complexity Low_complexity 5 91 0 478 218 0 15 chr12 125778550 125778683 -18007772 + (TCCA)n Simple_repeat Simple_repeat 1 131 0 629 308 11 0 chr12 125778986 125779171 -18007284 + MIR SINE MIR 64 250 -12 753 208 159 5 chr12 125779708 125779915 -18006540 + MIR SINE MIR 10 248 -14 182 366 49 8 chr12 125780403 125780526 -18005929 - L2 LINE L2 -58 3214 3087 268 257 108 0 chr12 125782175 125782249 -18004206 + L2 LINE L2 3232 3313 0 794 267 46 5 chr12 125782279 125782493 -18003962 - MIR SINE MIR 0 262 41 575 191 262 38 chr12 125782942 125783125 -18003330 - MER58A DNA MER1_type 0 224 1 2067 112 10 35 chr12 125783158 125783471 -18002984 - AluSx SINE Alu -7 305 1 215 293 188 7 chr12 125783498 125783644 -18002811 - MIR SINE MIR -62 146 18 672 273 10 19 chr12 125783790 125783916 -18002539 + MIR SINE MIR 28 153 -109 1906 165 33 30 chr12 125783916 125784279 -18002176 + THE1B LTR MaLR 1 364 0 672 273 10 19 chr12 125784279 125784357 -18002098 + MIR SINE MIR 153 230 -32 809 130 0 9 chr12 125784827 125784942 -18001513 + AluJb SINE Alu 1 114 -198 23 0 0 29 chr12 125784957 125784979 -18001476 + AT_rich Low_complexity Low_complexity 1 23 -10 1723 181 3 23 chr12 125784979 125785278 -18001177 + AluJo SINE Alu 1 293 -19 23 0 0 29 chr12 125785278 125785289 -18001166 + AT_rich Low_complexity Low_complexity 23 33 0 377 367 30 12 chr12 125785771 125785940 -18000515 + MIR SINE MIR 18 189 -73 734 239 86 71 chr12 125786492 125786760 -17999695 - L2 LINE L2 -1 3312 3041 189 0 0 0 chr12 125786869 125786890 -17999565 + (T)n Simple_repeat Simple_repeat 1 21 0 520 169 0 0 chr12 125786972 125787061 -17999394 + MER5A DNA MER1_type 18 106 -83 1939 156 53 12 chr12 125787090 125787430 -17999025 + THE1B LTR MaLR 11 364 0 213 200 0 0 chr12 125787431 125787471 -17998984 + MER5A DNA MER1_type 149 188 -1 838 208 0 56 chr12 125787523 125787720 -17998735 - MER5A DNA MER1_type -1 188 3 2223 105 0 3 chr12 125787954 125788258 -17998197 + AluSx SINE Alu 1 303 -9 315 280 217 21 chr12 125788259 125788402 -17998053 + MIR SINE MIR 6 176 -86 192 246 0 15 chr12 125788556 125788621 -17997834 - L3b LINE CR1 -196 1387 1324 228 135 0 0 chr12 125789046 125789083 -17997372 + (T)n Simple_repeat Simple_repeat 1 37 0 196 270 127 0 chr12 125789243 125789306 -17997149 - L2 LINE L2 -49 3223 3153 337 365 45 11 chr12 125789313 125789491 -17996964 + MER5A DNA MER1_type 6 189 0 343 236 90 42 chr12 125789530 125789674 -17996781 - L2 LINE L2 -219 3053 2903 1040 250 30 33 chr12 125790300 125790507 -17995948 + LTR16A1 LTR ERVL 159 366 -91 2074 130 0 0 chr12 125790507 125790807 -17995648 - AluSx SINE Alu -12 300 1 1040 250 30 33 chr12 125790807 125790899 -17995556 + LTR16A1 LTR ERVL 366 457 0 379 296 28 9 chr12 125790906 125791014 -17995441 + MIR SINE MIR 16 125 -83 1252 134 9 54 chr12 125791329 125791491 -17994964 - MER20 DNA MER1_type -5 214 63 2356 52 0 0 chr12 125791491 125791778 -17994677 + AluY SINE Alu 11 297 -14 1252 134 9 54 chr12 125791778 125791838 -17994617 - MER20 DNA MER1_type -156 63 2 410 222 12 0 chr12 125792045 125792126 -17994329 - MER81 DNA DNA -2 112 31 186 103 0 0 chr12 125793037 125793066 -17993389 + (ATG)n Simple_repeat Simple_repeat 1 29 0 748 298 33 16 chr12 125793066 125793308 -17993147 - MIR SINE MIR -8 254 9 787 309 47 44 chr12 125794461 125794801 -17991654 + L2 LINE L2 2932 3272 0 317 341 30 45 chr12 125794972 125795104 -17991351 + L2 LINE L2 3143 3272 0 2478 102 20 28 chr12 125795172 125795363 -17991092 + L1PA13 LINE L1 5773 5964 -199 1856 103 11 0 chr12 125795363 125795625 -17990830 + AluSx SINE Alu 1 265 -47 2478 102 20 28 chr12 125795625 125795827 -17990628 + L1PA13 LINE L1 5964 6163 0 835 239 125 18 chr12 125797781 125798053 -17988402 - LTR16C LTR ERVL 0 491 191 752 276 5 10 chr12 125798193 125798392 -17988063 - MIR SINE MIR -18 244 47 209 300 50 38 chr12 125798556 125798636 -17987819 + MER5A DNA MER1_type 91 171 -18 285 261 201 47 chr12 125799656 125799890 -17986565 + L2 LINE L2 3043 3312 -1 657 253 93 6 chr12 125800249 125800431 -17986024 + MIR SINE MIR 65 262 0 504 227 74 45 chr12 125800563 125800747 -17985708 + MER113 DNA MER1_type? 6 183 -338 2303 171 55 0 chr12 125800747 125801151 -17985304 - MSTB LTR MaLR 0 426 1 504 227 74 45 chr12 125801151 125801357 -17985098 + MER113 DNA MER1_type? 183 467 -54 683 196 89 45 chr12 125801498 125801677 -17984778 - MER5A DNA MER1_type -2 187 1 397 276 102 0 chr12 125802257 125802355 -17984100 + MIR SINE MIR 93 200 -62 755 188 8 8 chr12 125802664 125803143 -17983312 + (TCCA)n Simple_repeat Simple_repeat 1 479 0 225 238 0 0 chr12 125803143 125803185 -17983270 + (CCCA)n Simple_repeat Simple_repeat 1 42 0 747 190 178 0 chr12 125804025 125804199 -17982256 - MER3 DNA MER1_type -1 208 4 688 172 159 13 chr12 125804218 125804375 -17982080 + MER5A DNA MER1_type 10 189 0 555 256 108 66 chr12 125804383 125804594 -17981861 - MER102a DNA MER1_type -1087 330 105 2102 109 0 10 chr12 125804594 125804898 -17981557 - AluSg SINE Alu -9 301 1 555 256 108 66 chr12 125804898 125804944 -17981511 - MER102a DNA MER1_type -1312 105 62 254 28 0 28 chr12 125805799 125805835 -17980620 + (CAA)n Simple_repeat Simple_repeat 2 36 0 193 237 0 0 chr12 125805951 125805989 -17980466 - L2 LINE L2 -10 3303 3266 2526 107 31 8 chr12 125806950 125807306 -17979149 - THE1B LTR MaLR 0 364 1 2222 136 15 98 chr12 125807702 125808173 -17978282 - MSTB1 LTR MaLR 0 432 1 569 266 49 30 chr12 125808285 125808488 -17977967 + L2 LINE L2 2653 2859 -455 419 263 17 17 chr12 125808598 125808716 -17977739 + MIR SINE MIR 28 145 -117 1900 206 75 31 chr12 125808717 125808908 -17977547 - MLT1G LTR MaLR 0 590 409 1318 169 52 0 chr12 125808908 125809121 -17977334 + MER58A DNA MER1_type 1 224 0 1900 206 75 31 chr12 125809121 125809452 -17977003 - MLT1G LTR MaLR -181 409 12 332 314 0 25 chr12 125809471 125809589 -17976866 + MIR SINE MIR 148 262 0 523 301 61 15 chr12 125810197 125810393 -17976062 + MIR SINE MIR 8 212 -50 410 184 7 40 chr12 125810447 125810599 -17975856 + GA-rich Low_complexity Low_complexity 2 148 0 394 269 46 39 chr12 125811557 125811687 -17974768 + MIR3 SINE MIR 66 196 -12 235 246 0 29 chr12 125811930 125811999 -17974456 + CT-rich Low_complexity Low_complexity 2 68 0 349 295 72 14 chr12 125812166 125812305 -17974150 - L2 LINE L2 -1 3271 3125 10386 189 91 22 chr12 125813055 125813110 -17973345 + L1MD2 LINE L1 22 72 -6468 2713 146 5 27 chr12 125813110 125813554 -17972901 - Tigger2a DNA MER2_type 0 434 1 10386 189 91 22 chr12 125813554 125813675 -17972780 + L1MD2 LINE L1 72 183 -6357 2034 110 10 10 chr12 125813675 125813967 -17972488 - AluSg SINE Alu -18 292 1 10386 189 91 22 chr12 125813967 125816096 -17970359 + L1MD2 LINE L1 183 2486 -4054 3831 225 68 36 chr12 125816080 125817143 -17969312 + L1MD2 LINE L1 3614 4725 -1815 * 2144 123 0 3 chr12 125817143 125817444 -17969011 - AluSg SINE Alu -10 300 1 3831 225 68 36 chr12 125817444 125817639 -17968816 + L1MD2 LINE L1 4725 4912 -1628 1958 197 36 25 chr12 125817652 125818098 -17968357 + MLT1C LTR MaLR 16 466 -1 813 224 19 39 chr12 125818100 125818359 -17968096 + L1MD2 LINE L1 4907 5160 -1380 * 3622 156 140 90 chr12 125818357 125818991 -17967464 + L1MD2 LINE L1 5744 6444 -309 619 232 0 32 chr12 125818991 125819116 -17967339 + FLAM_A SINE Alu 2 122 -11 3622 156 140 90 chr12 125819116 125819441 -17967014 + L1MD2 LINE L1 6444 6751 -2 279 259 94 0 chr12 125819524 125819590 -17966865 - MIR SINE MIR -67 195 118 1498 195 9 28 chr12 125819590 125819908 -17966547 + AluJb SINE Alu 1 312 0 279 259 94 0 chr12 125819908 125819926 -17966529 - MIR SINE MIR -144 118 103 328 286 0 23 chr12 125820427 125820598 -17965857 + CT-rich Low_complexity Low_complexity 2 168 0 247 247 0 24 chr12 125820611 125820696 -17965759 + CT-rich Low_complexity Low_complexity 2 84 0 539 301 43 6 chr12 125820699 125820862 -17965593 - MIR SINE MIR -71 191 23 1570 200 68 91 chr12 125820864 125821335 -17965120 - MLT1C LTR MaLR -2 465 6 407 243 63 9 chr12 125822231 125822342 -17964113 - MIR SINE MIR -48 214 98 250 261 15 0 chr12 125822611 125822676 -17963779 + MIR3 SINE MIR 129 194 -14 1183 189 0 0 chr12 125822978 125823179 -17963276 - MER3 DNA MER1_type 0 209 9 979 274 16 0 chr12 125824104 125824349 -17962106 + MIR SINE MIR 8 256 -6 538 273 72 63 chr12 125824487 125824545 -17961910 + L1ME4a LINE L1 5539 5595 -526 2086 137 0 0 chr12 125824545 125824851 -17961604 - AluSx SINE Alu -6 306 1 538 273 72 63 chr12 125824851 125825206 -17961249 + L1ME4a LINE L1 5595 5956 -165 394 261 70 21 chr12 125825822 125825964 -17960491 + MIR SINE MIR 2 150 -112 405 0 0 0 chr12 125826132 125826177 -17960278 + (CA)n Simple_repeat Simple_repeat 2 46 0 513 293 36 24 chr12 125826358 125826525 -17959930 + L2 LINE L2 3104 3272 0 554 285 5 55 chr12 125826605 125826702 -17959753 - L2 LINE L2 0 3313 3230 2288 178 77 23 chr12 125826702 125827181 -17959274 - MLT1D LTR MaLR 0 505 1 554 285 5 55 chr12 125827181 125827283 -17959172 - L2 LINE L2 -83 3230 3124 321 251 96 54 chr12 125827459 125827626 -17958829 - L2 LINE L2 -491 2823 2650 189 355 65 0 chr12 125828391 125828484 -17957971 - L2 LINE L2 -5 3267 3169 424 299 146 0 chr12 125828702 125828846 -17957609 - MIR SINE MIR -91 171 7 2127 176 121 13 chr12 125829190 125829645 -17956810 + MLT1D LTR MaLR 1 504 -1 1083 211 14 18 chr12 125831266 125831489 -17954966 + MER58A DNA MER1_type 3 224 0 440 268 116 41 chr12 125831498 125831737 -17954718 - L1ME4a LINE L1 -11 6110 5890 1893 137 0 56 chr12 125831737 125832059 -17954396 - AluJb SINE Alu -5 307 4 440 268 116 41 chr12 125832059 125832228 -17954227 - L1ME4a LINE L1 -231 5890 5660 1953 126 3 0 chr12 125832267 125832560 -17953895 + AluSx SINE Alu 1 294 -18 423 0 0 0 chr12 125833785 125833832 -17952623 + (CA)n Simple_repeat Simple_repeat 1 47 0 287 296 68 45 chr12 125834047 125834179 -17952276 + L2 LINE L2 3179 3313 0 689 33 11 0 chr12 125834411 125834503 -17951952 + (TG)n Simple_repeat Simple_repeat 2 94 0 341 267 26 26 chr12 125835597 125835713 -17950742 - MER5A DNA MER1_type -50 139 24 * 430 234 80 7 chr12 125835707 125835844 -17950611 - MIR SINE MIR -35 227 81 187 300 0 33 chr12 125836138 125836198 -17950257 + MIR3 SINE MIR 15 72 -136 300 228 13 63 chr12 125836206 125836285 -17950170 + MER81 DNA DNA 24 98 -16 219 253 105 42 chr12 125836303 125836398 -17950057 + MIR3 SINE MIR 102 202 -6 1944 159 0 3 chr12 125837112 125837402 -17949053 - AluJo SINE Alu -23 289 1 358 237 44 89 chr12 125837527 125837662 -17948793 + MLT1H LTR MaLR 421 549 0 197 122 49 0 chr12 125838024 125838065 -17948390 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 201 119 48 0 chr12 125838209 125838251 -17948204 + (TA)n Simple_repeat Simple_repeat 1 44 0 254 336 26 0 chr12 125838820 125838933 -17947522 - MIR SINE MIR 0 262 147 212 293 35 35 chr12 125839250 125839366 -17947089 - L3 LINE CR1 -644 933 818 399 100 0 0 chr12 125839695 125839765 -17946690 + (GA)n Simple_repeat Simple_repeat 2 71 0 898 179 7 4 chr12 125840102 125840380 -17946075 + CT-rich Low_complexity Low_complexity 1 279 0 978 176 4 4 chr12 125840397 125840932 -17945523 + CT-rich Low_complexity Low_complexity 1 535 0 279 146 0 55 chr12 125840933 125840988 -17945467 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 443 295 16 16 chr12 125841505 125841634 -17944821 + MIR SINE MIR 18 146 -62 1705 146 55 29 chr12 125841855 125842154 -17944301 - AluSx SINE Alu 0 306 1 305 177 65 0 chr12 125842223 125842285 -17944170 + MIR SINE MIR 81 146 -62 1829 127 60 8 chr12 125842527 125842819 -17943636 + AluJb SINE Alu 1 306 0 1564 249 119 29 chr12 125843461 125844051 -17942404 + MER20B DNA MER1_type 29 671 -112 2552 83 0 0 chr12 125844183 125844495 -17941960 + AluSx SINE Alu 1 312 0 314 263 12 0 chr12 125846118 125846214 -17940241 + L2 LINE L2 2893 2989 -283 2159 106 7 0 chr12 125846264 125846547 -17939908 - AluSx SINE Alu -26 286 2 1169 129 0 34 chr12 125846634 125846812 -17939643 - AluSg/x SINE Alu -8 304 133 715 257 9 29 chr12 125846818 125846857 -17939598 + L2 LINE L2 3108 3146 -167 1995 162 0 17 chr12 125846857 125847209 -17939246 - MER7A DNA MER2_type 0 346 3 715 257 9 29 chr12 125847209 125847379 -17939076 + L2 LINE L2 3146 3313 0 180 341 101 8 chr12 125848030 125848159 -17938296 + MIR SINE MIR 67 207 -55 327 130 0 0 chr12 125848355 125848409 -17938046 + (CA)n Simple_repeat Simple_repeat 2 55 0 216 179 0 0 chr12 125850245 125850284 -17936171 + L2 LINE L2 3270 3308 -5 322 292 37 14 chr12 125850380 125850509 -17935946 - MIR SINE MIR -60 148 20 807 114 0 53 chr12 125850526 125850658 -17935797 + AluJo/FLAM SINE Alu 4 128 -174 2297 89 3 0 chr12 125850661 125850943 -17935512 + AluSq SINE Alu 1 283 -30 2241 106 7 0 chr12 125852481 125852773 -17933682 - AluSx SINE Alu -18 294 1 285 341 87 12 chr12 125853036 125853209 -17933246 + MIR SINE MIR 77 262 0 378 0 0 0 chr12 125853807 125853849 -17932606 + (GA)n Simple_repeat Simple_repeat 1 42 0 1075 197 62 5 chr12 125853876 125854084 -17932371 - AluJo SINE Alu -92 220 1 228 204 37 0 chr12 125854313 125854367 -17932088 - MER81 DNA DNA -1 113 58 259 380 20 0 chr12 125854371 125854471 -17931984 - MIR3 SINE MIR -15 193 92 742 177 34 125 chr12 125854495 125854626 -17931829 + MER33 DNA MER1_type 1 91 -2494 744 30 0 10 chr12 125854626 125854725 -17931730 + L1PB1 LINE L1 6054 6151 0 742 177 34 125 chr12 125854725 125854856 -17931599 + MER33 DNA MER1_type 91 232 -92 239 258 0 42 chr12 125855123 125855243 -17931212 + (CGGGG)n Simple_repeat Simple_repeat 3 117 0 1952 165 3 3 chr12 125855487 125855784 -17930671 - AluJb SINE Alu -15 297 1 2605 62 0 3 chr12 125855796 125856104 -17930351 - AluY SINE Alu -4 307 1 374 197 26 0 chr12 125856107 125856183 -17930272 + MER33 DNA MER1_type 243 320 -4 1601 190 0 8 chr12 125856507 125856621 -17929834 + AluJb SINE Alu 23 136 -176 2233 92 0 7 chr12 125856621 125856943 -17929512 + AluSx SINE Alu 1 320 0 1601 190 0 8 chr12 125856943 125857090 -17929365 + AluJb SINE Alu 136 283 -29 1779 31 31 0 chr12 125857090 125857312 -17929143 + L1PA3 LINE L1 5924 6152 -3 227 302 81 0 chr12 125857328 125857414 -17929041 + L1MC/D LINE L1 5782 5874 -1934 826 284 58 39 chr12 125858062 125858477 -17927978 + L1MC4a LINE L1 5475 5897 -1911 1714 201 3 0 chr12 125858691 125858990 -17927465 - AluJo SINE Alu -10 302 3 557 211 118 6 chr12 125859037 125859198 -17927257 + MIR SINE MIR 20 198 -64 1375 120 0 0 chr12 125859206 125859397 -17927058 - AluSg/x SINE Alu 0 310 120 1830 153 13 22 chr12 125859399 125859713 -17926742 - AluSx SINE Alu -1 311 1 233 317 48 41 chr12 125860456 125860601 -17925854 + MIR SINE MIR 117 262 0 274 239 0 28 chr12 125860792 125860863 -17925592 + T-rich Low_complexity Low_complexity 4 72 0 939 324 44 42 chr12 125860931 125861720 -17924735 - L2 LINE L2 -58 3214 2392 327 178 10 10 chr12 125861753 125861944 -17924511 + AluJo SINE Alu 19 302 0 255 125 0 0 chr12 125861944 125861984 -17924471 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 431 331 25 6 chr12 125862152 125862309 -17924146 + MIR SINE MIR 51 210 -52 326 264 25 74 chr12 125862637 125862758 -17923697 + L1MDa LINE L1 2467 2581 -3959 232 208 111 0 chr12 125863020 125863092 -17923363 - MER116 DNA Mariner 0 80 1 368 301 79 35 chr12 125863113 125863316 -17923139 - MIR SINE MIR -49 213 2 252 77 0 0 chr12 125863683 125863722 -17922733 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 2207 93 38 0 chr12 125863722 125864011 -17922444 - AluSx SINE Alu -12 300 1 928 196 6 6 chr12 125864402 125864570 -17921885 + AluJ SINE Alu 137 304 -8 223 222 22 0 chr12 125864573 125864618 -17921837 + L2 LINE L2 3208 3253 -19 302 217 171 0 chr12 125864671 125864759 -17921696 - Charlie8 DNA MER1_type -2139 278 177 2402 98 0 0 chr12 125864877 125865182 -17921273 + AluSx SINE Alu 1 305 -7 546 207 124 5 chr12 125865268 125865431 -17921024 + MER5A DNA MER1_type 4 189 0 2247 125 0 6 chr12 125865693 125866005 -17920450 + AluSx SINE Alu 1 310 -2 499 261 37 58 chr12 125866018 125866259 -17920196 + MER102a DNA MER1_type 95 330 0 498 283 13 44 chr12 125866952 125867111 -17919344 + MIR SINE MIR 50 203 -59 306 206 10 31 chr12 125867126 125867223 -17919232 + MER113 DNA MER1_type? 30 124 -397 1572 221 71 0 chr12 125867340 125867734 -17918721 + L1MD3 LINE L1 7574 7995 0 1941 181 16 11 chr12 125867738 125868109 -17918346 - L1MB5 LINE L1 -147 6027 5655 583 189 189 0 chr12 125868107 125868234 -17918221 + L1MB5 LINE L1 6016 6166 -8 * 1988 138 3 7 chr12 125868375 125868665 -17917790 - AluJo SINE Alu -23 289 1 1089 235 86 52 chr12 125869378 125869472 -17916983 + LTR33 LTR ERVL 1 90 -431 2550 52 0 3 chr12 125869472 125869778 -17916677 + AluY SINE Alu 1 305 -6 1089 235 86 52 chr12 125869778 125870185 -17916270 + LTR33 LTR ERVL 90 519 -2 570 265 48 21 chr12 125870322 125870511 -17915944 - MIR SINE MIR -58 204 11 1858 155 29 0 chr12 125870540 125870817 -17915638 + AluJb SINE Alu 2 286 -26 407 19 19 0 chr12 125870817 125870869 -17915586 + (CATA)n Simple_repeat Simple_repeat 2 54 0 402 74 0 0 chr12 125871616 125871645 -17914810 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 402 74 0 0 chr12 125871645 125871699 -17914756 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 788 147 29 4 chr12 125871724 125872003 -17914452 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 306 261 35 35 chr12 125872009 125872151 -17914304 - L1MC4 LINE L1 -150 7892 7751 876 99 0 16 chr12 125872471 125872592 -17913863 + AluJb SINE Alu 14 132 -180 368 271 18 66 chr12 125872656 125872822 -17913633 + MARNA DNA Mariner 275 432 -154 213 279 63 36 chr12 125873384 125873495 -17912960 + L2 LINE L2 3154 3267 -5 203 235 44 44 chr12 125874280 125874348 -17912107 - MIR3 SINE MIR -42 166 99 31 26 0 0 chr12 125874372 125874410 -17912045 + AT_rich Low_complexity Low_complexity 1 38 0 1724 169 29 0 chr12 125874413 125874692 -17911763 - AluJb SINE Alu -25 287 1 244 350 51 7 chr12 125874768 125874905 -17911550 - MIR SINE MIR -59 203 61 1473 154 0 0 chr12 125875683 125875903 -17910552 + AluJb SINE Alu 1 220 -92 492 248 16 8 chr12 125876134 125876263 -17910192 + MIR3 SINE MIR 30 159 -49 335 280 35 49 chr12 125876270 125876413 -17910042 - MER5A DNA MER1_type -23 166 26 501 286 51 28 chr12 125877191 125877369 -17909086 - MIR SINE MIR -34 228 47 263 339 10 10 chr12 125877585 125877698 -17908757 + MIR SINE MIR 32 143 -65 531 0 0 0 chr12 125878519 125878578 -17907877 + (TA)n Simple_repeat Simple_repeat 1 59 0 527 248 59 13 chr12 125878621 125878774 -17907681 - MIR SINE MIR -56 206 47 24 0 0 0 chr12 125879849 125879873 -17906582 + GC_rich Low_complexity Low_complexity 1 24 0 309 264 19 38 chr12 125879962 125880068 -17906387 + C-rich Low_complexity Low_complexity 2 105 0 528 16 0 0 chr12 125880481 125880542 -17905913 + (CA)n Simple_repeat Simple_repeat 2 62 0 378 129 0 0 chr12 125881139 125881201 -17905254 + (CA)n Simple_repeat Simple_repeat 2 63 0 277 244 231 38 chr12 125881518 125881678 -17904777 + MIR SINE MIR 63 253 -9 201 139 0 0 chr12 125882353 125882396 -17904059 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 278 211 18 18 chr12 125882428 125882594 -17903861 + (CAGAGA)n Simple_repeat Simple_repeat 4 169 0 188 178 10 50 chr12 125882602 125882703 -17903752 + GA-rich Low_complexity Low_complexity 2 98 0 280 228 14 0 chr12 125882747 125882892 -17903563 + GA-rich Low_complexity Low_complexity 2 148 0 579 326 9 5 chr12 125882994 125883209 -17903246 - MIR SINE MIR 0 262 47 377 236 121 30 chr12 125884136 125884301 -17902154 + MIR SINE MIR 69 248 -14 939 182 16 5 chr12 125884483 125884670 -17901785 + MER5A DNA MER1_type 1 189 0 266 347 88 7 chr12 125885128 125885275 -17901180 - MIR3 SINE MIR -20 188 30 282 363 0 9 chr12 125885511 125885624 -17900831 + MIR3 SINE MIR 13 124 -84 238 325 50 50 chr12 125886609 125886769 -17899686 + MER5A DNA MER1_type 12 171 -18 266 369 50 21 chr12 125886614 125886755 -17899700 - MER5B DNA MER1_type -1 177 33 439 305 14 21 chr12 125887070 125887211 -17899244 + MIR3 SINE MIR 20 159 -49 231 259 98 54 chr12 125887448 125887560 -17898895 - L2 LINE L2 -35 3237 3121 938 232 24 20 chr12 125887791 125888043 -17898412 + MIR SINE MIR 9 256 -6 890 200 63 0 chr12 125888232 125888407 -17898048 + MER5A DNA MER1_type 1 186 -3 936 134 0 0 chr12 125888679 125888850 -17897605 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 1038 135 0 0 chr12 125888864 125889042 -17897413 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1564 198 78 51 chr12 125889046 125889496 -17896959 + LTR40b LTR ERVL 1 462 0 324 322 85 17 chr12 125889774 125889951 -17896504 + L2 LINE L2 3074 3262 -10 228 179 0 0 chr12 125890026 125890065 -17896390 - MIR SINE MIR -18 244 206 443 173 62 0 chr12 125890147 125890228 -17896227 - MIR SINE MIR -173 89 4 631 253 163 10 chr12 125890344 125890546 -17895909 - MIR SINE MIR -12 250 18 450 260 0 24 chr12 125890757 125890880 -17895575 + MIR SINE MIR 21 140 -122 713 247 188 31 chr12 125891133 125891190 -17895265 + LTR16C LTR ERVL 195 242 -249 2467 116 19 11 chr12 125891190 125891551 -17894904 + THE1B LTR MaLR 1 364 0 713 247 188 31 chr12 125891551 125891748 -17894707 + LTR16C LTR ERVL 242 489 -2 206 344 43 0 chr12 125891757 125891850 -17894605 - L2 LINE L2 -15 3257 3161 2321 119 0 6 chr12 125891913 125892224 -17894231 + AluSx SINE Alu 1 309 -3 571 221 90 117 chr12 125892442 125892741 -17893714 - L2 LINE L2 -1 3312 3022 1889 142 0 8 chr12 125892850 125893117 -17893338 + AluSx SINE Alu 1 265 -47 23 54 0 0 chr12 125893125 125893162 -17893293 + AT_rich Low_complexity Low_complexity 1 37 0 284 231 176 0 chr12 125893493 125893584 -17892871 - MIR SINE MIR -75 187 81 290 267 119 67 chr12 125893629 125893839 -17892616 - L2 LINE L2 -181 3091 2871 626 255 125 9 chr12 125895020 125895236 -17891219 + LTR33 LTR ERVL 18 258 -263 562 150 38 23 chr12 125895311 125895444 -17891011 + LTR33 LTR ERVL 386 520 -1 403 273 89 15 chr12 125895675 125895837 -17890618 + MIR SINE MIR 19 191 -65 536 314 151 24 chr12 125895862 125896458 -17889997 - L2 LINE L2 0 3272 2554 541 245 41 52 chr12 125896543 125896871 -17889584 + MLT1J2 LTR MaLR 64 446 -4 628 281 97 41 chr12 125896875 125897195 -17889260 - L2 LINE L2 -773 2541 2204 190 191 0 24 chr12 125897194 125897236 -17889219 + L2 LINE L2 3271 3311 -2 * 190 191 0 24 chr12 125897680 125897722 -17888733 - L2 LINE L2 -2 3311 3271 * 628 281 97 41 chr12 125897721 125898041 -17888414 + L2 LINE L2 2204 2541 -773 541 245 41 52 chr12 125898045 125898373 -17888082 - MLT1J2 LTR MaLR -4 446 64 563 310 144 34 chr12 125898458 125899053 -17887402 + L2 LINE L2 2554 3272 0 403 273 89 15 chr12 125899078 125899240 -17887215 - MIR SINE MIR -65 143 19 562 150 38 23 chr12 125899471 125899604 -17886851 - LTR33 LTR ERVL -1 520 386 41443 30 24 1 chr12 125899634 125905473 -17880982 + L1HS LINE L1 1 5974 -181 318 259 106 12 chr12 125905588 125905673 -17880782 - MIR SINE MIR -155 107 15 190 371 0 9 chr12 125905703 125905808 -17880647 + MIR SINE MIR 155 258 -4 221 281 22 34 chr12 125906017 125906106 -17880349 + L2 LINE L2 3154 3241 -72 2065 111 0 83 chr12 125906142 125906466 -17879989 + AluSx SINE Alu 1 297 -15 631 211 44 126 chr12 125906466 125906784 -17879671 - MER113 DNA MER1_type? -158 363 72 2103 129 3 7 chr12 125907247 125907550 -17878905 - AluSx SINE Alu -10 302 1 206 344 43 0 chr12 125907613 125907706 -17878749 + L2 LINE L2 3161 3257 -15 713 247 188 31 chr12 125907715 125907912 -17878543 - LTR16C LTR ERVL -2 489 242 2467 116 19 11 chr12 125907912 125908273 -17878182 - THE1B LTR MaLR 0 364 1 713 247 188 31 chr12 125908273 125908330 -17878125 - LTR16C LTR ERVL -249 242 195 441 268 0 24 chr12 125908584 125908707 -17877748 - MIR SINE MIR -122 140 21 631 253 163 10 chr12 125908918 125909120 -17877335 + MIR SINE MIR 18 250 -12 416 171 61 12 chr12 125909236 125909318 -17877137 + MIR SINE MIR 4 89 -173 228 179 0 0 chr12 125909400 125909439 -17877016 + MIR SINE MIR 206 244 -18 324 322 85 17 chr12 125909514 125909691 -17876764 - L2 LINE L2 -10 3262 3074 1574 195 78 53 chr12 125909969 125910420 -17876035 - LTR40b LTR ERVL 0 462 1 1059 117 0 0 chr12 125910423 125910594 -17875861 + (TGGA)n Simple_repeat Simple_repeat 4 174 0 1008 128 0 0 chr12 125910608 125910787 -17875668 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 890 200 63 0 chr12 125911059 125911234 -17875221 - MER5A DNA MER1_type -3 186 1 938 232 24 20 chr12 125911423 125911675 -17874780 - MIR SINE MIR -6 256 9 703 291 58 14 chr12 125912454 125912729 -17873726 - MER102a DNA MER1_type -3 327 41 548 261 16 37 chr12 125913511 125913699 -17872756 + MLT1K LTR MaLR 133 316 -272 304 206 68 0 chr12 125913816 125913889 -17872566 + MLT1K LTR MaLR 511 588 0 512 291 15 0 chr12 125913894 125914028 -17872427 - MIR SINE MIR -57 205 70 332 253 146 28 chr12 125914219 125914397 -17872058 + MIR SINE MIR 17 215 -47 468 280 25 32 chr12 125914461 125914618 -17871837 - L3 LINE CR1 -103 1474 1319 2261 121 0 16 chr12 125914630 125914945 -17871510 - AluSx SINE Alu -2 310 1 185 62 0 31 chr12 125914957 125914989 -17871466 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 216 261 0 0 chr12 125914990 125915036 -17871419 + CT-rich Low_complexity Low_complexity 3 48 0 594 309 32 76 chr12 125915099 125915545 -17870910 + L2 LINE L2 2646 3085 -187 667 304 9 27 chr12 125916092 125916316 -17870139 + MIR SINE MIR 42 261 -1 282 297 66 0 chr12 125916353 125916444 -17870011 + MIR SINE MIR 41 137 -71 337 256 12 0 chr12 125916649 125916735 -17869720 - MER81 DNA DNA -2 112 26 1664 176 20 10 chr12 125916961 125917263 -17869192 - AluJb SINE Alu -1 311 7 279 246 16 0 chr12 125917538 125917599 -17868856 - MIR SINE MIR 0 262 201 911 197 129 0 chr12 125917699 125917892 -17868563 + MER20 DNA MER1_type 1 218 -1 311 266 260 19 chr12 125917897 125918051 -17868404 - MIR SINE MIR -59 203 13 258 298 129 9 chr12 125918871 125919033 -17867422 - MIR SINE MIR 0 262 75 451 295 105 33 chr12 125919595 125919817 -17866638 - MIR SINE MIR -13 249 18 305 232 158 42 chr12 125920283 125920378 -17866077 + MIR SINE MIR 51 156 -106 185 340 0 0 chr12 125920532 125920585 -17865870 + MIR SINE MIR 153 205 -57 1724 170 0 17 chr12 125920614 125920990 -17865465 - AluSq SINE Alu 0 371 1 723 215 57 150 chr12 125921059 125921426 -17865029 + MLT1F1 LTR MaLR 4 361 -206 357 316 102 10 chr12 125921553 125921608 -17864847 - MIR SINE MIR -12 250 201 2319 100 0 0 chr12 125921608 125921898 -17864557 - AluSx SINE Alu -22 290 1 357 316 102 10 chr12 125921898 125922038 -17864417 - MIR SINE MIR -61 201 37 642 310 88 0 chr12 125922965 125923181 -17863274 - MIR SINE MIR -21 241 7 2029 118 7 0 chr12 125923277 125923547 -17862908 - AluSq SINE Alu -39 274 3 419 246 40 37 chr12 125923740 125923903 -17862552 - MIR SINE MIR -56 206 45 2260 93 3 39 chr12 125923904 125924215 -17862240 - AluY SINE Alu -11 300 1 452 299 78 0 chr12 125924321 125924488 -17861967 - MER117 DNA MER1_type 0 197 18 1733 173 3 37 chr12 125924492 125924631 -17861824 + AluJo SINE Alu 1 143 -169 2326 87 0 7 chr12 125924631 125924952 -17861503 + AluY SINE Alu 1 311 0 1733 173 3 37 chr12 125924952 125925135 -17861320 + AluJo SINE Alu 143 312 0 210 37 0 0 chr12 125925141 125925168 -17861287 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 241 319 26 17 chr12 125925985 125926101 -17860354 + MLT1K LTR MaLR 5 121 -467 575 268 14 7 chr12 125926222 125926364 -17860091 + L2 LINE L2 3170 3312 -1 516 218 36 0 chr12 125926456 125926566 -17859889 + MLT1K LTR MaLR 367 480 -108 261 277 114 54 chr12 125926599 125926765 -17859690 - L2 LINE L2 -19 3294 3119 984 157 6 39 chr12 125926777 125926955 -17859500 + AluJb SINE Alu 137 308 -4 647 312 129 16 chr12 125926992 125927380 -17859075 - L2 LINE L2 -338 2976 2545 500 220 116 29 chr12 125928131 125928304 -17858151 + MIR SINE MIR 6 193 -69 615 257 38 54 chr12 125928484 125928583 -17857872 + L1ME3 LINE L1 5895 5994 -168 2058 141 3 10 chr12 125928583 125928887 -17857568 - AluJo SINE Alu -10 302 1 615 257 38 54 chr12 125928887 125929048 -17857407 + L1ME3 LINE L1 5994 6151 -11 529 180 16 0 chr12 125929113 125929241 -17857214 + (TCCA)n Simple_repeat Simple_repeat 3 132 0 546 79 0 0 chr12 125929268 125929344 -17857111 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 326 195 12 0 chr12 125929365 125929447 -17857008 + (TCCA)n Simple_repeat Simple_repeat 2 84 0 466 345 61 29 chr12 125929472 125929814 -17856641 - L2 LINE L2 -6 3266 2914 1556 212 79 60 chr12 125931244 125931777 -17854678 + L1ME2 LINE L1 5320 5862 -302 388 274 6 24 chr12 125931728 125931892 -17854563 + L1MA4 LINE L1 6011 6171 -129 * 970 173 68 21 chr12 125931892 125931933 -17854522 + AluJo SINE Alu 82 120 -192 936 0 0 0 chr12 125931933 125932037 -17854418 + (TAAAA)n Simple_repeat Simple_repeat 2 105 0 970 173 68 21 chr12 125932037 125932186 -17854269 + AluJo SINE Alu 120 281 -31 438 218 23 8 chr12 125932186 125932319 -17854136 + L1MA4 LINE L1 6164 6298 -2 563 234 61 10 chr12 125932323 125932490 -17853965 + L1ME2 LINE L1 5866 6050 -116 2365 113 55 3 chr12 125932490 125932836 -17853619 - THE1B LTR MaLR 0 364 1 563 234 61 10 chr12 125932836 125932855 -17853600 + L1ME2 LINE L1 6050 6067 -99 338 339 59 45 chr12 125932902 125933123 -17853332 + HAL1b LINE L1 552 775 -573 22 56 0 0 chr12 125933148 125933184 -17853271 + AT_rich Low_complexity Low_complexity 1 36 0 311 252 152 46 chr12 125933240 125933391 -17853064 + L1ME LINE L1 5640 5806 -315 211 293 240 0 chr12 125933397 125933472 -17852983 + MIR SINE MIR 53 145 -117 692 277 242 0 chr12 125933474 125933734 -17852721 - L2 LINE L2 0 3313 2991 280 300 80 0 chr12 125933722 125933822 -17852633 - L2 LINE L2 -548 2766 2659 * 1754 197 0 13 chr12 125933895 125934204 -17852251 - AluJo SINE Alu -7 305 1 844 282 60 5 chr12 125934863 125935079 -17851376 + MIR SINE MIR 9 236 -26 180 111 0 0 chr12 125935100 125935127 -17851328 + (TTA)n Simple_repeat Simple_repeat 2 28 0 235 320 188 6 chr12 125935127 125935308 -17851147 + MIR SINE MIR 38 251 -11 2334 121 0 0 chr12 125935328 125935635 -17850820 + AluSx SINE Alu 1 307 -5 660 215 110 25 chr12 125935881 125936044 -17850411 + MIR SINE MIR 21 197 -65 241 316 11 32 chr12 125936059 125936154 -17850301 - L2 LINE L2 -31 3241 3149 404 273 28 49 chr12 125936812 125936955 -17849500 - MIR SINE MIR -56 206 67 1525 264 78 17 chr12 125937043 125937521 -17848934 + MLT1H LTR MaLR 1 549 0 777 188 7 0 chr12 125937712 125937850 -17848605 - MER20 DNA MER1_type -80 139 1 435 269 32 13 chr12 125938146 125938302 -17848153 - LTR16A1 LTR ERVL 0 457 299 404 258 111 6 chr12 125938671 125938848 -17847607 - MIR SINE MIR -27 235 39 1877 124 74 7 chr12 125938854 125939137 -17847318 - AluSx SINE Alu -10 302 1 537 228 17 94 chr12 125939599 125939832 -17846623 - MER102b DNA MER1_type -45 296 82 363 247 59 53 chr12 125940057 125940227 -17846228 + L2 LINE L2 2837 3007 -265 184 231 58 0 chr12 125940369 125940421 -17846034 + L2 LINE L2 3217 3271 -1 284 269 67 25 chr12 125940830 125940949 -17845506 + L2 LINE L2 2970 3093 -179 317 285 41 8 chr12 125940993 125941116 -17845339 + L2 LINE L2 2970 3096 -176 205 138 0 0 chr12 125941872 125941901 -17844554 + (TCC)n Simple_repeat Simple_repeat 3 31 0 187 265 36 60 chr12 125942174 125942257 -17844198 + MER5A DNA MER1_type 81 161 -28 702 190 31 25 chr12 125942452 125942615 -17843840 + L2 LINE L2 3150 3313 0 761 190 6 0 chr12 125942657 125943014 -17843441 + (TGGA)n Simple_repeat Simple_repeat 1 359 0 268 276 52 9 chr12 125943337 125943453 -17843002 - L1ME4a LINE L1 -44 6077 5957 923 253 116 0 chr12 125943503 125943728 -17842727 - MIR SINE MIR -4 258 8 2654 186 65 103 chr12 125943812 125944079 -17842376 + MER97a DNA MER1_type? 1 276 -618 2965 112 16 0 chr12 125944079 125944524 -17841931 - L1MA4A LINE L1 -11 6292 5841 2654 186 65 103 chr12 125944524 125944535 -17841920 + MER97a DNA MER1_type? 276 286 -608 2410 92 0 9 chr12 125944535 125944850 -17841605 - AluSq SINE Alu -1 312 1 2654 186 65 103 chr12 125944850 125945476 -17840979 + MER97a DNA MER1_type? 286 872 -22 225 310 101 13 chr12 125945662 125945820 -17840635 - L1ME4a LINE L1 -285 5885 5714 330 67 0 0 chr12 125946140 125946185 -17840270 + (CA)n Simple_repeat Simple_repeat 1 45 0 291 263 88 0 chr12 125946413 125946493 -17839962 + L2 LINE L2 3136 3222 -50 353 247 60 149 chr12 125946553 125946788 -17839667 - MIR SINE MIR -14 248 35 575 275 86 37 chr12 125946875 125947337 -17839118 + L2 LINE L2 2587 3081 -191 2416 94 0 0 chr12 125947414 125947723 -17838732 + AluSc SINE Alu 1 309 0 249 200 0 0 chr12 125947754 125947799 -17838656 + L2 LINE L2 3269 3313 0 299 311 11 0 chr12 125948169 125948259 -17838196 - MIR SINE MIR -76 132 42 437 275 26 3 chr12 125948289 125948409 -17838046 - MER5A DNA MER1_type -65 113 6 225 78 255 0 chr12 125948523 125948574 -17837881 + AluJ/FRAM SINE Alu 217 280 -22 267 54 0 0 chr12 125948580 125948617 -17837838 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 211 184 0 0 chr12 125948669 125948707 -17837748 - L2 LINE L2 -10 3303 3266 1724 198 62 40 chr12 125948740 125949189 -17837266 - MLT1C LTR MaLR -4 463 5 2463 83 3 0 chr12 125949247 125949548 -17836907 + AluSp SINE Alu 1 302 -11 358 244 33 0 chr12 125950849 125950962 -17835493 + MER5A DNA MER1_type 13 118 -60 450 139 116 0 chr12 125950963 125951049 -17835406 + MER45A DNA AcHobo 83 178 0 356 204 0 126 chr12 125951049 125951152 -17835303 + MER5A DNA MER1_type 100 189 0 426 262 0 0 chr12 125951431 125951553 -17834902 + GA-rich Low_complexity Low_complexity 3 124 0 26 0 0 0 chr12 125951636 125951662 -17834793 + AT_rich Low_complexity Low_complexity 1 26 0 1532 189 0 8 chr12 125951662 125951922 -17834533 - AluJb SINE Alu -7 305 48 2783 80 5 8 chr12 125951922 125952298 -17834157 + THE1C LTR MaLR 1 375 0 342 160 0 0 chr12 125952298 125952348 -17834107 - AluJb SINE Alu -250 52 3 612 253 41 7 chr12 125952643 125952789 -17833666 + MIR SINE MIR 17 167 -95 1619 217 28 31 chr12 125952812 125953212 -17833243 + L1MA9 LINE L1 5852 6253 -59 1945 146 7 0 chr12 125953212 125953524 -17832931 - AluJb SINE Alu 0 314 1 1619 217 28 31 chr12 125953524 125953546 -17832909 + L1MA9 LINE L1 6253 6274 -38 324 263 38 0 chr12 125954063 125954143 -17832312 - MIR SINE MIR -78 184 102 631 259 88 0 chr12 125954560 125954707 -17831748 + MIR SINE MIR 13 172 -90 361 321 88 38 chr12 125954825 125954984 -17831471 + L2 LINE L2 3104 3270 -2 2007 153 3 10 chr12 125955087 125955394 -17831061 - AluJo SINE Alu -7 305 1 187 215 38 0 chr12 125955631 125955710 -17830745 + (TCCA)n Simple_repeat Simple_repeat 2 83 0 476 346 69 45 chr12 125955710 125956042 -17830413 - L2 LINE L2 0 3272 2933 292 250 152 22 chr12 125956716 125956808 -17829647 - L2 LINE L2 -13 3300 3197 1820 172 0 20 chr12 125956856 125957153 -17829302 - AluJb SINE Alu -21 291 1 423 286 39 43 chr12 125957367 125957598 -17828857 + HAL1 LINE L1 2276 2505 -2 1685 177 99 5 chr12 125957680 125957986 -17828469 + Charlie4a DNA MER1_type 17 368 -1593 2407 105 0 0 chr12 125957986 125958290 -17828165 + AluSx SINE Alu 1 304 -8 1685 177 99 5 chr12 125958290 125958367 -17828088 + Charlie4a DNA MER1_type 368 436 -72 2759 105 11 65 chr12 125958371 125958441 -17828014 + L1PA15 LINE L1 5713 5785 -380 1991 143 13 7 chr12 125958441 125958749 -17827706 + AluJb SINE Alu 1 310 -2 2759 105 11 65 chr12 125958749 125959143 -17827312 + L1PA15 LINE L1 5785 6152 -13 992 17 0 0 chr12 125959145 125959263 -17827192 - L1PA3 LINE L1 -298 5857 5740 439 165 25 0 chr12 125959304 125959383 -17827072 + Charlie4a DNA MER1_type 424 504 -4 513 370 17 8 chr12 125959589 125959824 -17826631 - MIR SINE MIR -13 249 13 217 200 0 67 chr12 125959858 125959918 -17826537 - MIR SINE MIR -63 145 90 2057 128 0 20 chr12 125960118 125960415 -17826040 - AluJb SINE Alu -21 291 1 1153 143 0 22 chr12 125961275 125961457 -17824998 + AluJb SINE Alu 134 311 -1 1649 160 21 14 chr12 125961473 125961760 -17824695 + AluJb SINE Alu 11 299 -13 6717 26 0 0 chr12 125961760 125962524 -17823931 + L1PA3 LINE L1 5392 6155 0 22 0 0 0 chr12 125962524 125962546 -17823909 + AT_rich Low_complexity Low_complexity 1 22 0 239 269 25 84 chr12 125963076 125963195 -17823260 + MIR SINE MIR 81 192 -70 370 248 13 0 chr12 125963864 125963985 -17822470 + (TGGA)n Simple_repeat Simple_repeat 3 128 -25 2674 195 72 2 chr12 125963985 125964509 -17821946 + MER68 LTR ERV1 2 562 0 370 248 13 0 chr12 125964509 125964536 -17821919 + (TGGA)n Simple_repeat Simple_repeat 128 153 0 186 286 0 0 chr12 125964593 125964663 -17821792 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 975 141 0 11 chr12 125964699 125965060 -17821395 + (TGGA)n Simple_repeat Simple_repeat 1 358 0 539 195 0 7 chr12 125965079 125965233 -17821222 + (TGGA)n Simple_repeat Simple_repeat 2 154 0 357 24 0 0 chr12 125965234 125965276 -17821179 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 275 6 18 chr12 125966439 125966610 -17819845 + (CA)n Simple_repeat Simple_repeat 1 169 0 235 279 21 21 chr12 125966626 125966766 -17819689 + (CA)n Simple_repeat Simple_repeat 1 140 0 232 161 11 35 chr12 125966787 125966874 -17819581 + (CA)n Simple_repeat Simple_repeat 1 85 0 311 299 17 23 chr12 125966930 125967104 -17819351 + (CA)n Simple_repeat Simple_repeat 1 173 0 185 167 19 0 chr12 125967122 125967176 -17819279 + (CA)n Simple_repeat Simple_repeat 1 55 0 204 192 30 0 chr12 125967233 125967332 -17819123 + (CA)n Simple_repeat Simple_repeat 1 102 0 254 171 14 0 chr12 125967392 125967462 -17818993 + (CA)n Simple_repeat Simple_repeat 1 71 0 227 77 0 26 chr12 125967519 125967558 -17818897 + (CA)n Simple_repeat Simple_repeat 1 38 0 398 307 6 0 chr12 125967751 125967927 -17818528 + (CA)n Simple_repeat Simple_repeat 1 177 0 209 285 9 9 chr12 125968009 125968227 -17818228 + (CA)n Simple_repeat Simple_repeat 1 218 0 202 228 20 0 chr12 125968259 125968360 -17818095 + (CA)n Simple_repeat Simple_repeat 1 103 0 187 269 32 32 chr12 125968474 125968567 -17817888 + L2 LINE L2 1838 1930 -1384 259 280 247 0 chr12 125968647 125968740 -17817715 + L2 LINE L2 3151 3266 -6 437 312 65 26 chr12 125969111 125969354 -17817101 - MIR SINE MIR -7 255 5 395 231 11 11 chr12 125969641 125969732 -17816723 + L2 LINE L2 3182 3272 0 350 211 14 0 chr12 125970237 125970308 -17816147 + MIR SINE MIR 87 158 -104 2067 143 0 13 chr12 125970354 125970669 -17815786 + AluJb SINE Alu 1 311 -1 183 333 29 0 chr12 125971137 125971206 -17815249 + L2 LINE L2 3242 3312 -1 230 364 39 0 chr12 125971308 125971385 -17815070 + L2 LINE L2 3192 3271 -1 378 0 0 0 chr12 125971713 125971755 -17814700 + (CA)n Simple_repeat Simple_repeat 1 42 0 490 293 77 12 chr12 125973385 125973618 -17812837 - MIR SINE MIR -6 256 4 354 295 70 0 chr12 125973618 125973729 -17812726 - MIR SINE MIR -96 166 47 436 161 204 11 chr12 125973845 125973938 -17812517 + MIR3 SINE MIR 11 121 -87 300 280 47 52 chr12 125974091 125974291 -17812164 + MIR SINE MIR 1 199 -63 246 220 136 0 chr12 125974305 125974364 -17812091 - L2 LINE L2 -5 3308 3242 2092 110 43 7 chr12 125974403 125974702 -17811753 + AluSq SINE Alu 1 310 -3 456 222 0 22 chr12 125974838 125974928 -17811527 - L2 LINE L2 -3 3310 3223 2218 107 0 7 chr12 125975467 125975758 -17810697 - AluSx SINE Alu -23 289 1 269 242 180 55 chr12 125975859 125975987 -17810468 + L2 LINE L2 3121 3264 -8 538 223 45 9 chr12 125976077 125976189 -17810266 - L2 LINE L2 -5 3308 3193 1111 169 30 35 chr12 125976200 125976226 -17810229 - AluJo SINE Alu -12 300 275 2772 87 0 8 chr12 125976226 125976592 -17809863 - THE1B LTR MaLR -1 363 1 1111 169 30 35 chr12 125976592 125976766 -17809689 - AluJo SINE Alu -37 275 101 936 197 42 42 chr12 125976839 125977052 -17809403 - MER20 DNA MER1_type -3 216 4 471 273 140 0 chr12 125977056 125977199 -17809256 - MIR SINE MIR -12 250 88 1076 215 59 6 chr12 125977387 125977699 -17808756 - MER33 DNA MER1_type -9 315 1 194 264 132 19 chr12 125977908 125978014 -17808441 + MIR SINE MIR 32 149 -113 755 200 0 7 chr12 125978067 125978212 -17808243 + MER3 DNA MER1_type 66 209 0 1027 237 63 0 chr12 125978315 125978585 -17807870 + L1MEc LINE L1 394 680 -5716 626 203 45 57 chr12 125978589 125978766 -17807689 + MIR SINE MIR 18 192 -70 2229 130 0 0 chr12 125978864 125979157 -17807298 + AluSx SINE Alu 12 304 -8 503 83 0 36 chr12 125979333 125979417 -17807038 - L1MA4A LINE L1 -7 6296 6216 1905 133 4 14 chr12 125979936 125980214 -17806241 + AluSx SINE Alu 1 275 -37 2648 83 14 3 chr12 125980214 125980562 -17805893 + THE1A LTR MaLR 2 353 -2 2374 112 0 3 chr12 125980641 125980954 -17805501 - AluSq SINE Alu -1 312 1 628 283 58 0 chr12 125981998 125982171 -17804284 - MIR SINE MIR -10 252 70 415 284 10 0 chr12 125982315 125982417 -17804038 + MIR SINE MIR 47 149 -113 948 131 151 50 chr12 125982712 125982911 -17803544 - MER20 DNA MER1_type 0 219 1 1964 146 3 7 chr12 125982975 125983283 -17803172 + AluJb SINE Alu 1 307 -5 831 301 14 0 chr12 125983287 125983500 -17802955 + MIR SINE MIR 11 226 -36 533 258 47 55 chr12 125983957 125984164 -17802291 - MIR SINE MIR -3 259 47 215 333 27 18 chr12 125984181 125984292 -17802163 + MIR SINE MIR 109 220 -42 2251 101 10 0 chr12 125984456 125984752 -17801703 - AluSx SINE Alu -1 311 13 593 203 260 9 chr12 125985691 125985918 -17800537 - MLT1H LTR MaLR -265 284 1 296 269 0 43 chr12 125987086 125987179 -17799276 + MIR3 SINE MIR 118 206 -2 208 177 38 101 chr12 125987209 125987288 -17799167 + MER5A DNA MER1_type 1 74 -115 913 166 6 0 chr12 125987581 125987756 -17798699 + (TGGA)n Simple_repeat Simple_repeat 1 176 0 233 264 19 0 chr12 125987758 125987811 -17798644 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 487 312 133 0 chr12 125988743 125988916 -17797539 + MER117 DNA MER1_type 2 197 0 225 302 151 12 chr12 125988916 125989002 -17797453 + L2 LINE L2 3167 3264 -8 432 277 92 33 chr12 125989013 125989198 -17797257 - MIR SINE MIR -1 261 67 1018 181 91 15 chr12 125989255 125989329 -17797126 + MER20 DNA MER1_type 6 73 -146 279 54 0 0 chr12 125989329 125989366 -17797089 + (TG)n Simple_repeat Simple_repeat 2 38 0 1018 181 91 15 chr12 125989366 125989490 -17796965 + MER20 DNA MER1_type 73 219 0 374 74 62 0 chr12 125990554 125990587 -17795868 + GA-rich Low_complexity Low_complexity 3 33 -55 2218 110 16 3 chr12 125990587 125990896 -17795559 + AluSq SINE Alu 1 313 0 374 74 62 0 chr12 125990896 125990943 -17795512 + GA-rich Low_complexity Low_complexity 33 88 0 269 306 92 10 chr12 125991196 125991294 -17795161 - MIR SINE MIR -113 149 44 2435 174 42 19 chr12 125991439 125991911 -17794544 + MLT1D LTR MaLR 23 505 0 183 156 0 0 chr12 125992808 125992840 -17793615 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 181 219 37 73 chr12 125992948 125993030 -17793425 - MIR SINE MIR -68 194 116 328 268 38 27 chr12 125993041 125993188 -17793267 + MIR SINE MIR 75 218 -44 245 189 263 0 chr12 125993238 125993333 -17793122 - MIR SINE MIR -71 191 72 21 0 0 0 chr12 125993579 125993600 -17792855 + AT_rich Low_complexity Low_complexity 1 21 0 473 267 129 14 chr12 125994624 125994841 -17791614 + MIR SINE MIR 21 262 0 845 221 133 0 chr12 125994933 125995128 -17791327 + MER58A DNA MER1_type 4 224 0 213 238 95 0 chr12 125995302 125995365 -17791090 - MIR SINE MIR -70 192 124 1871 119 4 19 chr12 125996012 125996281 -17790174 + AluSx SINE Alu 9 273 -39 24 53 0 0 chr12 125997638 125997676 -17788779 + AT_rich Low_complexity Low_complexity 1 38 0 986 129 0 20 chr12 125997848 125997995 -17788460 - AluSg SINE Alu -166 144 1 3516 91 0 0 chr12 125998004 125998467 -17787988 - L1PA15 LINE L1 -6 6159 5697 368 370 0 11 chr12 125998652 125998831 -17787624 + L2 LINE L2 2862 3038 -275 207 237 0 0 chr12 125998831 125998890 -17787565 + MER91A DNA MER1_type 1 59 -137 1572 231 135 7 chr12 125998892 125999299 -17787156 - MLT1C LTR MaLR -2 465 7 251 349 135 0 chr12 125999303 125999429 -17787026 + MER91A DNA MER1_type 54 196 0 272 289 103 0 chr12 125999500 125999597 -17786858 + L2 LINE L2 3204 3310 -3 788 163 7 7 chr12 126001099 126001240 -17785215 - L1MD3 LINE L1 0 7995 7855 2501 57 12 12 chr12 126001341 126001674 -17784781 + L1PA6 LINE L1 5819 6151 -3 261 351 30 8 chr12 126001801 126001935 -17784520 - MIR SINE MIR -123 139 3 232 385 66 0 chr12 126001988 126002110 -17784345 + L2 LINE L2 3136 3265 -7 726 226 28 0 chr12 126003091 126003268 -17783187 - L1MD3 LINE L1 0 7995 7814 675 255 67 5 chr12 126003325 126003533 -17782922 - MIR SINE MIR -40 222 2 1719 165 85 20 chr12 126003534 126003886 -17782569 - THE1C LTR MaLR 0 375 1 354 298 25 25 chr12 126004701 126004822 -17781633 + MIR SINE MIR 49 169 -93 1134 239 49 0 chr12 126004826 126005111 -17781344 + L1MB7 LINE L1 5866 6164 -20 339 161 0 0 chr12 126005213 126005275 -17781180 - THE1C LTR MaLR -198 177 116 * 346 182 4 0 chr12 126005272 126005349 -17781106 - Alu SINE Alu -247 54 1 280 279 174 0 chr12 126006491 126006663 -17779792 + MIR SINE MIR 46 247 -15 947 211 58 5 chr12 126007677 126007885 -17778570 + MER20 DNA MER1_type 1 219 0 222 37 0 0 chr12 126008152 126008179 -17778276 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2904 13 3 0 chr12 126008261 126008575 -17777880 - AluYb8 SINE Alu -3 315 1 225 302 105 12 chr12 126008781 126008867 -17777588 + MLT1K LTR MaLR 120 213 -375 256 140 18 18 chr12 126008931 126008988 -17777467 + C-rich Low_complexity Low_complexity 1 57 0 2590 89 29 9 chr12 126008988 126009337 -17777118 - THE1B LTR MaLR -8 356 1 270 136 15 91 chr12 126010125 126010191 -17776264 + MLT1D LTR MaLR 1 61 -444 329 96 77 0 chr12 126010200 126010252 -17776203 - MADE1 DNA Mariner -24 56 1 * 949 233 22 22 chr12 126010252 126010640 -17775815 + MLT1D LTR MaLR 68 501 -4 277 227 91 23 chr12 126010794 126010882 -17775573 - MIR SINE MIR -78 184 91 5578 81 53 5 chr12 126010904 126011692 -17774763 - L1PB2 LINE L1 0 6151 5326 238 158 0 0 chr12 126012046 126012084 -17774371 - MADE1 DNA Mariner -42 38 1 522 200 97 76 chr12 126012228 126012413 -17774042 - MER5A DNA MER1_type 0 189 1 1027 205 5 31 chr12 126012423 126012647 -17773808 - MER20 DNA MER1_type -1 218 1 301 291 13 0 chr12 126013976 126014055 -17772400 + MIR SINE MIR 32 111 -151 272 226 0 0 chr12 126014068 126014121 -17772334 + L2 LINE L2 3248 3300 -13 1568 174 80 78 chr12 126014230 126014691 -17771764 + MLT1C LTR MaLR 6 467 0 2268 178 7 41 chr12 126014927 126015389 -17771066 - L1MB5 LINE L1 -68 6106 5661 2221 183 54 48 chr12 126015389 126015887 -17770568 + MER72-int LTR ERV1 5888 6388 -370 1888 186 33 14 chr12 126015960 126016321 -17770134 + MER72-int LTR ERV1 6391 6758 0 4440 142 19 7 chr12 126016321 126017006 -17769449 + MER72 LTR ERV1 1 693 -29 630 113 9 70 chr12 126017030 126017145 -17769310 - L1MB5 LINE L1 -512 5668 5561 26 30 0 0 chr12 126017338 126017371 -17769084 + AT_rich Low_complexity Low_complexity 1 33 0 865 241 42 47 chr12 126017441 126017677 -17768778 - Charlie8 DNA MER1_type -2156 261 27 669 250 22 40 chr12 126017996 126018029 -17768426 + L1MC3 LINE L1 5592 5624 -2161 1579 79 14 9 chr12 126018029 126018244 -17768211 - L1PA10 LINE L1 -3 6165 5950 2528 62 0 0 chr12 126018244 126018565 -17767890 + L1PA10 LINE L1 5621 5941 -227 512 195 17 0 chr12 126018896 126019014 -17767441 + CT-rich Low_complexity Low_complexity 4 123 0 2061 65 0 0 chr12 126019114 126019376 -17767079 + L1PA4 LINE L1 5894 6155 0 267 264 58 58 chr12 126019557 126019691 -17766764 + L1ME LINE L1 455 571 -5959 2189 126 19 46 chr12 126019706 126020079 -17766376 - THE1B LTR MaLR -1 363 1 240 156 22 0 chr12 126020293 126020338 -17766117 + L1ME LINE L1 748 793 -5737 272 257 147 15 chr12 126020733 126020775 -17765680 - L1MA10 LINE L1 -1 6333 6292 1276 221 28 12 chr12 126020775 126021096 -17765359 - L1ME2 LINE L1 -52 6112 5787 761 250 61 59 chr12 126021144 126021588 -17764867 + L1ME LINE L1 1262 1706 -4834 189 121 0 0 chr12 126021658 126021691 -17764764 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1344 247 29 15 chr12 126021759 126022099 -17764356 - LTR16A LTR ERVL 0 450 106 28 0 0 0 chr12 126022342 126022370 -17764085 + AT_rich Low_complexity Low_complexity 1 28 0 1798 137 0 29 chr12 126022411 126022689 -17763766 - AluJb SINE Alu -15 297 28 1774 183 21 21 chr12 126022701 126023039 -17763416 - MLT1F LTR MaLR 0 542 205 387 0 0 0 chr12 126023329 126023372 -17763083 + (TG)n Simple_repeat Simple_repeat 2 44 0 569 259 92 56 chr12 126025278 126025507 -17760948 - L1ME2 LINE L1 -482 5639 5412 1840 147 67 28 chr12 126025507 126025868 -17760587 - THE1C LTR MaLR 0 375 1 569 259 92 56 chr12 126025868 126025952 -17760503 - L1ME2 LINE L1 -709 5412 5333 2539 107 0 33 chr12 126026128 126026170 -17760285 - L1MB3 LINE L1 0 6183 6141 2258 86 3 7 chr12 126026170 126026462 -17759993 - AluSc SINE Alu -16 293 3 2539 107 0 33 chr12 126026462 126026811 -17759644 - L1MB3 LINE L1 -42 6141 5805 201 121 0 0 chr12 126027123 126027156 -17759299 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 97 0 0 chr12 126027728 126027759 -17758696 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1947 124 30 27 chr12 126027831 126028129 -17758326 - AluJb SINE Alu -13 299 1 572 291 35 39 chr12 126028138 126028423 -17758032 - L1MB3 LINE L1 -298 5823 5540 1518 184 11 87 chr12 126028614 126028682 -17757773 - MER58B DNA MER1_type -2079 341 269 686 271 79 5 chr12 126028682 126028885 -17757570 + MER20 DNA MER1_type 1 218 -1 1518 184 11 87 chr12 126028885 126029185 -17757270 - MER58B DNA MER1_type -2151 269 1 600 211 101 48 chr12 126029239 126029447 -17757008 - MIR SINE MIR -14 248 30 612 167 65 114 chr12 126029793 126030039 -17756416 + ORSL DNA AcHobo 22 255 -20 364 279 95 3 chr12 126030385 126030526 -17755929 - MIR SINE MIR -70 138 13 471 35 0 0 chr12 126030889 126030946 -17755509 + (TCTCC)n Simple_repeat Simple_repeat 1 57 0 204 241 173 68 chr12 126031112 126031245 -17755210 + MIR SINE MIR 23 169 -93 243 247 43 43 chr12 126031389 126031482 -17754973 - L2 LINE L2 -27 3245 3153 887 186 9 6 chr12 126031757 126032104 -17754351 + GA-rich Low_complexity Low_complexity 1 348 0 1556 154 70 28 chr12 126032275 126032561 -17753894 + AluJo SINE Alu 1 298 -14 220 325 16 16 chr12 126033177 126033274 -17753181 + CT-rich Low_complexity Low_complexity 1 100 -26 197 62 0 31 chr12 126033274 126033306 -17753149 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 220 325 16 16 chr12 126033306 126033334 -17753121 + CT-rich Low_complexity Low_complexity 99 126 0 247 245 0 0 chr12 126033975 126034024 -17752431 - MER58 DNA MER1_type -18 2402 2354 2000 165 12 12 chr12 126034028 126034368 -17752087 - MER2 DNA MER2_type -5 340 1 483 63 0 0 chr12 126034369 126034432 -17752023 + (CA)n Simple_repeat Simple_repeat 2 64 0 759 322 153 40 chr12 126034886 126035414 -17751041 - MLT1K LTR MaLR 0 588 1 830 247 0 6 chr12 126035663 126035841 -17750614 + MER5B DNA MER1_type 2 178 0 195 304 38 25 chr12 126036345 126036424 -17750031 - L2 LINE L2 0 3272 3193 2048 135 0 20 chr12 126036822 126037125 -17749330 - AluSx SINE Alu -15 297 1 222 333 10 20 chr12 126037654 126037753 -17748702 - MIR SINE MIR -79 183 86 344 278 117 36 chr12 126038160 126038408 -17748047 - L2 LINE L2 -195 3077 2810 2131 174 31 54 chr12 126038543 126038920 -17747535 + MLT1C LTR MaLR 1 385 -82 1786 122 4 8 chr12 126038920 126039167 -17747288 + AluSx SINE Alu 36 281 -31 561 145 12 0 chr12 126039084 126039167 -17747288 + AluSg/x SINE Alu 198 306 0 205 40 0 0 chr12 126039167 126039192 -17747263 + (CAAAA)n Simple_repeat Simple_repeat 1 130 0 2131 174 31 54 chr12 126039192 126039291 -17747164 + MLT1C LTR MaLR 383 467 0 2201 97 0 60 chr12 126039732 126040051 -17746404 + AluSx SINE Alu 1 300 -12 334 241 11 0 chr12 126040203 126040290 -17746165 + MIR SINE MIR 60 147 -115 284 0 28 0 chr12 126040618 126040654 -17745801 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2130 125 0 0 chr12 126040655 126040975 -17745480 + AluSx SINE Alu 2 321 0 211 290 0 14 chr12 126040980 126041049 -17745406 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 1014 186 75 94 chr12 126041065 126041490 -17744965 - MER96B DNA MER1_type 0 417 1 251 311 29 0 chr12 126041695 126041798 -17744657 - L1ME3 LINE L1 -211 5951 5846 815 251 50 46 chr12 126041807 126042090 -17744365 + HsTC2 DNA Tc2 36 319 -1579 387 263 80 0 chr12 126042091 126042266 -17744189 + HsTC2 DNA Tc2 1707 1895 -3 319 260 0 0 chr12 126042266 126042359 -17744096 - L1ME3 LINE L1 -358 5804 5712 1054 78 0 0 chr12 126042480 126042608 -17743847 + AluSg/x SINE Alu 179 306 -6 817 273 65 38 chr12 126042721 126042806 -17743649 - L1ME3 LINE L1 -592 5570 5489 899 154 21 103 chr12 126042806 126043040 -17743415 - MER20 DNA MER1_type -4 215 1 817 273 65 38 chr12 126043040 126043809 -17742646 - L1ME3 LINE L1 -673 5489 4801 297 159 0 0 chr12 126043879 126043942 -17742513 + (TA)n Simple_repeat Simple_repeat 1 63 0 28 29 0 0 chr12 126043956 126043991 -17742464 + AT_rich Low_complexity Low_complexity 1 35 0 434 106 0 106 chr12 126043992 126044077 -17742378 - L1M1 LINE L1 -600 5704 5629 354 163 38 12 chr12 126044089 126044169 -17742286 + L1MD3 LINE L1 7733 7814 -181 1901 119 0 0 chr12 126044193 126044444 -17742011 + AluSx SINE Alu 1 251 -61 1522 188 70 11 chr12 126045260 126045547 -17740908 - AluJo SINE Alu -8 304 1 320 319 192 4 chr12 126045881 126046147 -17740308 + L2 LINE L2 2545 2860 -454 288 170 0 0 chr12 126046170 126046223 -17740232 + (CA)n Simple_repeat Simple_repeat 2 54 0 291 241 25 0 chr12 126046240 126046319 -17740136 + L2 LINE L2 2886 2966 -306 38902 84 14 6 chr12 126047250 126052884 -17733571 + L1P2 LINE L1 11 5685 -469 37365 56 3 15 chr12 126052984 126055994 -17730461 - HERVL-A1 LTR ERVL -1112 4542 1609 1917 106 3 3 chr12 126055994 126056277 -17730178 - L1PB1 LINE L1 0 6151 5869 37365 56 3 15 chr12 126056277 126057866 -17728589 - HERVL-A1 LTR ERVL -4045 1609 1 2861 73 73 26 chr12 126057866 126058290 -17728165 - MLT2A1 LTR ERVL 0 444 1 253 231 237 16 chr12 126058661 126058797 -17727658 + MIR SINE MIR 32 191 -67 298 345 8 26 chr12 126059080 126059246 -17727209 + MIR SINE MIR 17 177 -65 206 270 95 0 chr12 126059635 126059698 -17726757 + MIR SINE MIR 117 185 -77 329 288 72 0 chr12 126059728 126059853 -17726602 + L2 LINE L2 3180 3313 0 468 279 22 44 chr12 126059967 126060150 -17726305 - Charlie8 DNA MER1_type -2152 265 87 482 295 80 46 chr12 126060444 126060769 -17725686 - L1MC4a LINE L1 -1886 5922 5587 1901 129 18 3 chr12 126060780 126061066 -17725389 + AluSx SINE Alu 11 300 -12 706 260 36 5 chr12 126061077 126061273 -17725182 - LTR16A1 LTR ERVL -97 360 159 253 271 93 31 chr12 126061898 126062027 -17724428 + L2 LINE L2 2903 3039 -233 267 365 45 11 chr12 126062079 126062257 -17724198 - MER5A DNA MER1_type 0 189 6 228 135 0 0 chr12 126062487 126062524 -17723931 + (A)n Simple_repeat Simple_repeat 1 37 0 891 199 53 71 chr12 126063248 126063514 -17722941 - THE1B LTR MaLR -103 261 1 524 238 8 8 chr12 126063514 126063640 -17722815 - MIR SINE MIR -109 153 28 1898 126 9 52 chr12 126063961 126064287 -17722168 + AluSx SINE Alu 1 312 0 556 220 247 16 chr12 126064307 126064489 -17721966 + MER58A DNA MER1_type 1 224 0 737 264 46 5 chr12 126064937 126065147 -17721308 + MIR SINE MIR 41 258 -4 248 257 108 0 chr12 126065181 126065255 -17721200 - L2 LINE L2 0 3313 3232 738 212 7 20 chr12 126066238 126066384 -17720071 + FRAM SINE Alu 22 165 -11 2197 135 3 0 chr12 126067278 126067582 -17718873 - AluSx SINE Alu -6 306 2 284 0 28 0 chr12 126067583 126067619 -17718836 + (TTA)n Simple_repeat Simple_repeat 2 38 0 349 214 22 33 chr12 126068614 126068714 -17717741 - MIR SINE MIR -63 145 57 202 253 195 39 chr12 126068818 126068972 -17717483 + MER5A DNA MER1_type 1 189 0 207 111 0 28 chr12 126069073 126069109 -17717346 + (CA)n Simple_repeat Simple_repeat 1 35 0 809 237 47 51 chr12 126069503 126069739 -17716716 + Charlie8 DNA MER1_type 27 261 -2156 26 30 0 0 chr12 126069809 126069842 -17716613 + AT_rich Low_complexity Low_complexity 1 33 0 289 218 13 39 chr12 126071170 126071248 -17715207 - L2 LINE L2 -306 2966 2891 288 170 0 0 chr12 126071266 126071319 -17715136 + (TG)n Simple_repeat Simple_repeat 2 54 0 285 327 192 4 chr12 126071342 126071608 -17714847 - L2 LINE L2 -454 2860 2545 377 191 223 0 chr12 126071944 126072038 -17714417 + FLAM_C SINE Alu 4 118 -15 2887 101 7 5 chr12 126122105 126122511 -17663944 + L1PB1 LINE L1 5742 6148 -3 23 0 0 0 chr12 126122512 126122535 -17663920 + AT_rich Low_complexity Low_complexity 1 23 0 508 70 0 0 chr12 126122905 126122976 -17663479 - L1PB1 LINE L1 -34 6117 6047 593 327 143 14 chr12 126122978 126123336 -17663119 + L2 LINE L2 2907 3310 -3 902 303 16 8 chr12 126124219 126124473 -17661982 + MIR SINE MIR 6 261 -1 326 284 18 55 chr12 126125587 126125696 -17660759 - L1M4 LINE L1 -1363 4783 4679 2148 97 0 32 chr12 126125728 126126039 -17660416 + AluSg SINE Alu 1 301 -9 238 171 0 0 chr12 126126039 126126080 -17660375 + MLT1D LTR MaLR 456 496 -9 237 333 170 0 chr12 126126191 126126326 -17660129 + MIR SINE MIR 35 141 -67 209 333 201 14 chr12 126126812 126126956 -17659499 + MER5A DNA MER1_type 17 187 -2 2150 108 6 13 chr12 126127039 126127353 -17659102 - AluSx SINE Alu 0 312 1 24 0 0 0 chr12 126127353 126127377 -17659078 + AT_rich Low_complexity Low_complexity 1 24 0 935 178 26 0 chr12 126127862 126128014 -17658441 + FRAM SINE Alu 5 160 -6 617 239 60 63 chr12 126128029 126128102 -17658353 + L1ME1 LINE L1 5898 5970 -196 2040 124 3 10 chr12 126128102 126128408 -17658047 + AluSx SINE Alu 5 308 -4 617 239 60 63 chr12 126128408 126128602 -17657853 + L1ME1 LINE L1 5970 6164 -2 24 0 0 0 chr12 126128604 126128628 -17657827 + AT_rich Low_complexity Low_complexity 1 24 0 269 365 24 24 chr12 126130643 126130810 -17655645 + L2 LINE L2 733 899 -2415 356 323 100 35 chr12 126130862 126131122 -17655333 + L2 LINE L2 2479 2755 -559 1128 201 103 32 chr12 126131356 126131695 -17654760 + MER58D DNA MER1_type 20 382 -4 1140 260 117 7 chr12 126131710 126132153 -17654302 + LTR53 LTR ERVL 28 519 0 254 161 0 81 chr12 126133702 126133764 -17652691 + L1ME2 LINE L1 6107 6163 -1 434 276 86 0 chr12 126134264 126134438 -17652017 + L1MD3 LINE L1 7793 7981 -14 274 232 167 0 chr12 126135285 126135392 -17651063 + MIR SINE MIR 104 236 -26 519 234 27 0 chr12 126135447 126135558 -17650897 + MER81 DNA DNA 1 114 0 681 283 194 25 chr12 126135639 126135775 -17650680 - L2 LINE L2 0 3313 3201 189 107 0 0 chr12 126135775 126135803 -17650652 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 681 283 194 25 chr12 126135803 126136026 -17650429 - L2 LINE L2 -112 3201 2893 599 186 138 29 chr12 126136093 126136368 -17650087 - THE1C LTR MaLR 0 375 71 668 236 31 5 chr12 126136623 126136814 -17649641 + MER33 DNA MER1_type 15 210 -114 761 241 50 27 chr12 126137077 126137339 -17649116 - MLT1H LTR MaLR -229 320 53 265 81 0 0 chr12 126137900 126137937 -17648518 - Alu SINE Alu -271 37 1 424 181 0 0 chr12 126137941 126138024 -17648431 - L1MC/D LINE L1 -2096 5689 5607 211 299 16 38 chr12 126138683 126138867 -17647588 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 62 47 0 0 chr12 126138918 126139003 -17647452 + GC_rich Low_complexity Low_complexity 1 85 0 25 0 0 0 chr12 126139115 126139140 -17647315 + GC_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr12 126139236 126139285 -17647170 + GC_rich Low_complexity Low_complexity 1 49 0 2257 119 0 0 chr12 126139606 126139918 -17646537 - AluSx SINE Alu 0 312 1 208 231 0 0 chr12 126140021 126140073 -17646382 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 230 170 0 0 chr12 126140453 126140500 -17645955 + Alu SINE Alu 1 47 -253 242 302 29 47 chr12 126140672 126140844 -17645611 + (CCCCG)n Simple_repeat Simple_repeat 2 170 0 192 235 23 47 chr12 126141804 126141900 -17644555 - MIR SINE MIR -63 145 79 1176 203 198 14 chr12 126141904 126142323 -17644132 - MLT1D LTR MaLR -6 499 4 527 187 8 41 chr12 126143982 126144105 -17642350 - MLT1G3 LTR MaLR -267 263 145 224 287 249 24 chr12 126144465 126144758 -17641697 - L2 LINE L2 -659 2655 2297 294 129 0 0 chr12 126144758 126144820 -17641635 + (TG)n Simple_repeat Simple_repeat 2 63 0 421 279 104 6 chr12 126145041 126145224 -17641231 + MLT1C LTR MaLR 1 201 -348 402 293 48 59 chr12 126146122 126146392 -17640063 + MLT1L LTR MaLR 11 277 -338 4094 140 61 11 chr12 126146626 126146902 -17639553 + THE1-int LTR MaLR 150 411 -1169 2205 113 0 20 chr12 126146902 126147204 -17639251 + AluSg SINE Alu 1 296 -14 4094 140 61 11 chr12 126147204 126147734 -17638721 + THE1-int LTR MaLR 411 996 -584 209 296 37 19 chr12 126148080 126148188 -17638267 - L2 LINE L2 -279 3034 2925 23 33 0 0 chr12 126148560 126148590 -17637865 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr12 126148616 126148643 -17637812 + GC_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr12 126148739 126148760 -17637695 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 126148793 126148818 -17637637 + GC_rich Low_complexity Low_complexity 1 25 0 366 197 42 0 chr12 126149544 126149615 -17636840 + AluJ/FRAM SINE Alu 229 302 0 * 564 301 89 15 chr12 126149612 126149881 -17636574 + MLT1C LTR MaLR 171 459 -8 557 258 81 15 chr12 126150028 126150226 -17636229 - MIR SINE MIR -11 251 41 343 206 16 0 chr12 126151228 126151291 -17635164 + FRAM SINE Alu 59 122 -44 683 135 35 7 chr12 126151373 126151514 -17634941 + L1MC4 LINE L1 7082 7226 -816 545 248 24 65 chr12 126151792 126152038 -17634417 - MER106A DNA MER1_type 0 236 1 1064 241 34 14 chr12 126152254 126152548 -17633907 - MER82 DNA MER2_type -346 307 8 2344 95 3 7 chr12 126152997 126153302 -17633153 + AluSp SINE Alu 1 304 -9 324 281 21 0 chr12 126154563 126154659 -17631796 - MER3 DNA MER1_type -8 201 104 1751 133 47 14 chr12 126156284 126156563 -17629892 - AluSx SINE Alu -24 288 1 269 397 15 23 chr12 126156645 126156776 -17629679 - L2 LINE L2 0 3272 3143 472 17 17 0 chr12 126157442 126157500 -17628955 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1976 151 20 3 chr12 126157519 126157818 -17628637 + AluSx SINE Alu 1 304 -8 232 155 52 0 chr12 126157825 126157883 -17628572 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1831 169 0 7 chr12 126158669 126158965 -17627490 - AluSq SINE Alu -19 294 1 457 246 33 0 chr12 126159020 126159142 -17627313 - MIR SINE MIR -1 261 136 635 171 65 42 chr12 126159185 126159401 -17627054 - AluJo SINE Alu -90 222 2 255 303 67 25 chr12 126159795 126159914 -17626541 + MIR SINE MIR 17 140 -68 352 233 22 11 chr12 126159927 126160017 -17626438 - MLT1H1 LTR MaLR 0 555 465 1407 199 32 41 chr12 126160017 126160359 -17626096 - THE1B LTR MaLR 0 364 26 1086 124 21 5 chr12 126160850 126161036 -17625419 + L1PB1 LINE L1 5953 6141 -10 193 184 0 0 chr12 126162143 126162181 -17624274 - MIR SINE MIR -76 132 95 359 269 37 0 chr12 126162233 126162341 -17624114 + MIR SINE MIR 89 200 -62 823 238 40 22 chr12 126163113 126163336 -17623119 - MIR SINE MIR -1 261 35 524 220 53 27 chr12 126163907 126164059 -17622396 + MIR SINE MIR 39 192 -63 204 320 165 21 chr12 126166022 126166119 -17620336 + MIR SINE MIR 30 140 -122 196 302 48 0 chr12 126166333 126166396 -17620059 + L2 LINE L2 3201 3266 -6 230 273 102 11 chr12 126166868 126166956 -17619499 + MER33 DNA MER1_type 1 96 -228 1774 189 0 10 chr12 126167045 126167374 -17619081 + AluJo SINE Alu 1 312 0 502 311 105 0 chr12 126167732 126167941 -17618514 - MIR SINE MIR -18 244 14 385 298 24 85 chr12 126168537 126168785 -17617670 + L2 LINE L2 2925 3157 -115 251 161 18 0 chr12 126168790 126168846 -17617609 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 449 280 56 0 chr12 126168875 126169000 -17617455 + L2 LINE L2 3138 3269 -3 195 264 81 46 chr12 126169044 126169131 -17617324 + L2 LINE L2 3137 3226 -46 491 314 191 5 chr12 126169758 126169978 -17616477 + MIR SINE MIR 2 262 0 2267 95 0 20 chr12 126170088 126170384 -17616071 - AluSg SINE Alu -18 292 3 422 301 21 3 chr12 126170659 126170998 -17615457 + GA-rich Low_complexity Low_complexity 1 345 0 568 278 98 78 chr12 126171674 126171805 -17614650 + L2 LINE L2 2542 2669 -603 1785 167 39 0 chr12 126171805 126172165 -17614290 - L1MB5 LINE L1 0 6174 5801 568 278 98 78 chr12 126172165 126172552 -17613903 + L2 LINE L2 2669 3078 -194 308 232 0 11 chr12 126173922 126174017 -17612438 + GA-rich Low_complexity Low_complexity 2 95 0 1155 239 32 48 chr12 126174074 126174447 -17612008 + L1ME LINE L1 5455 5821 -349 2153 168 18 8 chr12 126174661 126175047 -17611408 + MLT1B LTR MaLR 1 390 0 322 306 119 8 chr12 126175182 126175316 -17611139 + L2 LINE L2 3162 3310 -3 1871 136 3 52 chr12 126175398 126175707 -17610748 - AluSx SINE Alu -18 294 1 382 235 50 17 chr12 126176232 126176351 -17610104 + MIR SINE MIR 25 147 -61 613 254 27 12 chr12 126176696 126176860 -17609595 - MIR SINE MIR -4 258 92 849 221 36 20 chr12 126177292 126177487 -17608968 + MER58A DNA MER1_type 27 224 0 587 266 24 0 chr12 126177755 126177924 -17608531 - MER3 DNA MER1_type -83 126 1 395 253 124 11 chr12 126178074 126178260 -17608195 + L1MC4a LINE L1 5718 5924 -1884 373 267 161 50 chr12 126178333 126178447 -17608008 - L2 LINE L2 -70 3243 3143 2001 163 0 0 chr12 126178447 126178748 -17607707 + AluJb SINE Alu 3 303 -9 373 267 161 50 chr12 126178748 126179128 -17607327 - L2 LINE L2 -170 3143 2693 802 125 0 0 chr12 126179128 126179248 -17607207 - L1P LINE L1 -1131 5015 4896 4568 85 9 15 chr12 126179248 126179871 -17606584 + L1PA10 LINE L1 5512 6135 -33 2276 92 7 7 chr12 126179871 126180174 -17606281 - AluSp SINE Alu -10 303 1 4568 85 9 15 chr12 126180174 126180207 -17606248 + L1PA10 LINE L1 6135 6167 -1 269 309 132 20 chr12 126180241 126180445 -17606010 - L2 LINE L2 -640 2674 2448 787 305 10 0 chr12 126181249 126181452 -17605003 - MER58A DNA MER1_type 0 224 20 395 328 39 0 chr12 126181731 126181859 -17604596 + L2 LINE L2 3140 3272 0 193 296 62 25 chr12 126183252 126183333 -17603122 + MIR3 SINE MIR 12 95 -113 651 266 124 21 chr12 126183424 126183497 -17602958 - MIR SINE MIR -1 261 197 1999 154 0 35 chr12 126183497 126183815 -17602640 - AluJo SINE Alu -5 307 1 651 266 124 21 chr12 126183815 126183974 -17602481 - MIR SINE MIR -65 197 5 349 313 23 8 chr12 126184424 126184555 -17601900 + MIR3 SINE MIR 74 206 -2 492 254 8 24 chr12 126185367 126185493 -17600962 + LTR67 LTR ERVL 428 551 -6 2242 103 10 0 chr12 126185548 126185838 -17600617 + AluSx SINE Alu 1 293 -19 201 217 72 14 chr12 126185877 126185946 -17600509 - MER5A DNA MER1_type -68 121 49 194 139 47 0 chr12 126186348 126186391 -17600064 + CT-rich Low_complexity Low_complexity 3 47 0 349 339 25 0 chr12 126186572 126186690 -17599765 - L1MC4a LINE L1 -1833 5975 5855 296 303 25 38 chr12 126186757 126186852 -17599603 + L1MC4a LINE L1 5741 5836 -1972 1127 188 32 5 chr12 126186852 126187070 -17599385 - MER58A DNA MER1_type 0 224 1 296 303 25 38 chr12 126187070 126187212 -17599243 + L1MC4a LINE L1 5836 5975 -1833 357 196 18 9 chr12 126187395 126187507 -17598948 + GA-rich Low_complexity Low_complexity 1 113 0 484 175 12 0 chr12 126187517 126187597 -17598858 - MER58A DNA MER1_type -26 81 1 406 305 8 0 chr12 126187600 126187718 -17598737 + L2 LINE L2 3192 3310 -3 2451 101 0 16 chr12 126187726 126188043 -17598412 + AluSx SINE Alu 1 312 0 402 264 143 6 chr12 126189278 126189460 -17596995 - MIR SINE MIR -36 226 20 1672 209 18 9 chr12 126189552 126189960 -17596495 + L1M4 LINE L1 5293 5703 -481 2649 163 29 14 chr12 126189990 126190506 -17595949 + L1MB5 LINE L1 5643 6166 -8 337 368 44 13 chr12 126191124 126191352 -17595103 - MIR SINE MIR -20 242 8 3576 149 13 38 chr12 126191494 126191609 -17594846 + L1MB3 LINE L1 5504 5620 -563 2387 123 22 8 chr12 126191609 126191967 -17594488 + THE1B LTR MaLR 1 363 -1 3576 149 13 38 chr12 126191967 126192278 -17594177 + L1MB3 LINE L1 5620 5911 -272 2334 91 0 7 chr12 126192278 126192585 -17593870 - AluSc SINE Alu -4 305 1 3576 149 13 38 chr12 126192585 126192852 -17593603 + L1MB3 LINE L1 5911 6183 0 1982 146 0 13 chr12 126192860 126193176 -17593279 + AluJb SINE Alu 1 312 0 245 315 34 0 chr12 126194262 126194351 -17592104 + MIR SINE MIR 117 208 -54 532 246 28 0 chr12 126194751 126194893 -17591562 + L1ME3A LINE L1 6020 6165 -5 2153 104 3 0 chr12 126194897 126195195 -17591260 + AluSg SINE Alu 2 300 -10 2691 154 17 34 chr12 126195210 126195685 -17590770 + MLT1C LTR MaLR 1 467 0 1632 166 23 33 chr12 126195761 126196062 -17590393 - AluJb SINE Alu -14 298 1 1048 283 53 8 chr12 126196312 126196686 -17589769 + L2 LINE L2 2923 3313 0 593 294 80 5 chr12 126196735 126196791 -17589664 - MIR SINE MIR -48 214 164 3765 123 27 22 chr12 126196791 126197309 -17589146 - MER7C DNA MER2_type -2429 599 76 1581 140 4 40 chr12 126197309 126197587 -17588868 - AluSx SINE Alu -12 300 33 3765 123 27 22 chr12 126197587 126197664 -17588791 - MER7C DNA MER2_type -2952 76 1 593 294 80 5 chr12 126197664 126197794 -17588661 - MIR SINE MIR -98 164 14 376 323 46 53 chr12 126198331 126198514 -17587941 + L2 LINE L2 2505 2688 -626 1826 139 0 17 chr12 126198514 126198831 -17587624 - AluSx SINE Alu 0 312 1 376 323 46 53 chr12 126198831 126198931 -17587524 + L2 LINE L2 2688 2787 -527 1233 213 97 105 chr12 126198941 126199430 -17587025 + MLT1D LTR MaLR 1 504 -1 430 297 84 77 chr12 126199459 126199873 -17586582 + L2 LINE L2 2851 3267 -5 284 229 104 74 chr12 126200560 126200679 -17585776 + MIR SINE MIR 6 127 -81 405 297 172 0 chr12 126200746 126200891 -17585564 + MER96 DNA MER1_type? 1 170 -5 446 189 0 0 chr12 126201911 126201985 -17584470 + MER58B DNA MER1_type 267 340 -1 2075 122 3 3 chr12 126202015 126202311 -17584144 + AluSx SINE Alu 1 296 -16 328 300 9 18 chr12 126202435 126202545 -17583910 - L2 LINE L2 -13 3259 3151 241 250 59 0 chr12 126203319 126203387 -17583068 + MIR SINE MIR 99 170 -92 2095 94 0 0 chr12 126203478 126203753 -17582702 - AluSx SINE Alu -8 304 30 341 306 41 8 chr12 126203753 126203874 -17582581 - MIR SINE MIR -48 214 90 802 269 31 9 chr12 126203984 126204211 -17582244 + L1MB7 LINE L1 5944 6175 -9 2253 136 44 115 chr12 126204306 126204873 -17581582 + L1MB8 LINE L1 5651 6177 -1 464 286 10 69 chr12 126204909 126205112 -17581343 + MIR SINE MIR 42 232 -30 348 268 42 21 chr12 126205403 126205545 -17580910 + MER103 DNA DNA 5 149 -17 244 354 94 10 chr12 126205822 126205918 -17580537 - MIR SINE MIR -150 112 9 605 288 6 30 chr12 126205972 126206259 -17580196 + LTR16A LTR ERVL 18 335 -115 1139 186 114 26 chr12 126206259 126206636 -17579819 - MLT1D LTR MaLR -1 504 1 488 219 39 23 chr12 126206636 126206750 -17579705 + LTR16A LTR ERVL 332 447 -3 1414 181 60 3 chr12 126206773 126207055 -17579400 - AluJo SINE Alu -13 299 2 1245 138 23 14 chr12 126207142 126207359 -17579096 - MER20 DNA MER1_type 0 219 1 486 297 134 29 chr12 126207990 126208199 -17578256 + MIR SINE MIR 31 261 -1 711 308 57 31 chr12 126208268 126208622 -17577833 + L2 LINE L2 2858 3220 -93 410 249 127 6 chr12 126208696 126208869 -17577586 - L2 LINE L2 -249 3064 2871 252 324 27 61 chr12 126208930 126209078 -17577377 - L2 LINE L2 -713 2601 2459 493 264 8 23 chr12 126209956 126210085 -17576370 + MIR SINE MIR 108 234 -28 368 273 121 8 chr12 126210085 126210217 -17576238 + MLT2D LTR ERVL 219 365 -49 322 223 8 31 chr12 126210227 126210357 -17576098 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 268 217 14 0 chr12 126210412 126210555 -17575900 + (TA)n Simple_repeat Simple_repeat 2 146 0 362 245 0 64 chr12 126210556 126210650 -17575805 + L1MC4 LINE L1 6616 6703 -1339 238 182 45 0 chr12 126210650 126210716 -17575739 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 245 90 60 30 chr12 126210746 126210813 -17575642 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 205 261 46 0 chr12 126211066 126211131 -17575324 + GA-rich Low_complexity Low_complexity 5 72 0 394 129 54 65 chr12 126212010 126212103 -17574352 - MIR SINE MIR -94 114 23 1138 195 14 0 chr12 126212135 126212345 -17574110 + MER20 DNA MER1_type 6 218 -1 252 328 41 8 chr12 126212914 126213036 -17573419 - MIR SINE MIR -6 256 131 687 227 8 0 chr12 126213040 126213172 -17573283 - MER58B DNA MER1_type -4 337 205 209 274 0 0 chr12 126213172 126213223 -17573232 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 806 291 128 35 chr12 126213310 126213715 -17572740 + L2 LINE L2 2871 3313 0 522 277 10 50 chr12 126213769 126213782 -17572673 + MIR SINE MIR 23 35 -227 1463 203 32 3 chr12 126213782 126214097 -17572358 + MER33 DNA MER1_type 1 324 0 522 277 10 50 chr12 126214097 126214285 -17572170 + MIR SINE MIR 35 216 -46 1740 186 7 0 chr12 126214677 126214984 -17571471 + AluJb SINE Alu 1 309 -3 720 307 96 27 chr12 126215068 126215105 -17571350 + MLT1K LTR MaLR 92 125 -463 279 0 0 0 chr12 126215105 126215136 -17571319 + (TG)n Simple_repeat Simple_repeat 1 31 0 720 307 96 27 chr12 126215136 126215538 -17570917 + MLT1K LTR MaLR 125 561 -27 541 291 24 106 chr12 126216475 126216660 -17569795 + Charlie8 DNA MER1_type 9 163 -178 1702 153 0 4 chr12 126216660 126216922 -17569533 - AluSx SINE Alu -51 261 1 541 291 24 106 chr12 126216922 126217028 -17569427 + Charlie8 DNA MER1_type 163 276 -65 278 284 0 0 chr12 126217082 126217156 -17569299 + Charlie8 DNA MER1_type 2344 2417 0 195 159 159 0 chr12 126217997 126218041 -17568414 - L2 LINE L2 -1 3271 3221 353 279 49 57 chr12 126218506 126218750 -17567705 + L1ME4a LINE L1 5630 5871 -250 859 206 0 0 chr12 126219320 126219466 -17566989 + MER3 DNA MER1_type 1 146 -63 670 156 62 31 chr12 126219466 126219594 -17566861 - FLAM_A SINE Alu -5 137 6 347 159 0 43 chr12 126219596 126219665 -17566790 + MER3 DNA MER1_type 144 209 0 277 200 20 0 chr12 126219628 126219678 -17566777 - MER3 DNA MER1_type -125 84 34 * 4394 81 2 0 chr12 126219725 126220278 -17566177 + MER41A LTR ERV1 1 554 0 550 250 52 35 chr12 126220806 126220978 -17565477 - MIR SINE MIR -58 204 30 587 217 167 6 chr12 126221063 126221243 -17565212 + L1MD3 LINE L1 7787 7995 0 2071 129 0 16 chr12 126221451 126221762 -17564693 + AluSq SINE Alu 1 306 -7 195 42 0 0 chr12 126222487 126222511 -17563944 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 243 0 0 0 chr12 126222510 126222537 -17563918 + (CA)n Simple_repeat Simple_repeat 1 27 0 1384 238 39 8 chr12 126222728 126223085 -17563370 + L1ME2 LINE L1 4760 5127 -1019 1330 142 18 5 chr12 126223091 126223309 -17563146 + AluSx SINE Alu 1 221 -91 2015 113 0 3 chr12 126223309 126223621 -17562834 + AluSx SINE Alu 2 312 0 1366 215 38 82 chr12 126223628 126223847 -17562608 + L1ME2 LINE L1 5295 5483 -681 863 204 0 106 chr12 126223847 126224092 -17562363 - MER20 DNA MER1_type 0 219 1 1366 215 38 82 chr12 126224092 126224347 -17562108 + L1ME2 LINE L1 5483 5748 -416 761 196 48 12 chr12 126224351 126224519 -17561936 + MLT1C LTR MaLR 6 179 -288 1573 182 10 0 chr12 126224529 126224826 -17561629 + AluJb SINE Alu 13 312 0 697 151 7 7 chr12 126224832 126224971 -17561484 + GA-rich Low_complexity Low_complexity 3 141 0 1150 186 49 26 chr12 126224971 126225235 -17561220 + MLT1C LTR MaLR 196 465 -2 1493 212 48 38 chr12 126225239 126225635 -17560820 + L1ME2 LINE L1 5759 6158 -6 330 115 0 0 chr12 126227088 126227140 -17559315 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 311 285 62 54 chr12 126227140 126227262 -17559193 - L2 LINE L2 -8 3264 3139 553 259 62 109 chr12 126227322 126227407 -17559048 + MIR SINE MIR 2 89 -173 1108 188 9 35 chr12 126227407 126227636 -17558819 - MER58A DNA MER1_type -1 223 1 553 259 62 109 chr12 126227636 126227824 -17558631 + MIR SINE MIR 89 262 0 189 0 0 0 chr12 126227839 126227860 -17558595 + (TCTCCC)n Simple_repeat Simple_repeat 2 22 0 6421 61 5 57 chr12 126227876 126229457 -17556998 + SVA Other Other 1 1382 -4 2110 112 0 3 chr12 126229692 126229995 -17556460 - AluSx SINE Alu -10 302 1 556 297 80 67 chr12 126230628 126230831 -17555624 + L2 LINE L2 2816 3015 -257 1178 219 5 5 chr12 126230831 126231055 -17555400 + MER58A DNA MER1_type 1 224 0 556 297 80 67 chr12 126231055 126231302 -17555153 + L2 LINE L2 3015 3272 0 2145 127 7 0 chr12 126231406 126231714 -17554741 + AluSx SINE Alu 1 310 -2 209 304 157 9 chr12 126232009 126232124 -17554331 + L2 LINE L2 3124 3255 -17 477 71 0 0 chr12 126232126 126232196 -17554259 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 250 214 71 0 chr12 126233379 126233435 -17553020 + MER117 DNA MER1_type 59 118 -79 232 227 0 0 chr12 126233824 126233868 -17552587 + L2 LINE L2 3262 3305 -8 2004 143 0 9 chr12 126233945 126234260 -17552195 + AluJb SINE Alu 1 312 0 1830 82 0 4 chr12 126234564 126234807 -17551648 + MER75B DNA T2_type 2 243 0 263 231 99 11 chr12 126234820 126234911 -17551544 + MER113 DNA MER1_type? 8 106 -415 2020 141 0 0 chr12 126234917 126235222 -17551233 + AluSx SINE Alu 1 305 -7 717 258 49 33 chr12 126235526 126235720 -17550735 + MIR SINE MIR 13 202 -60 3392 151 2 63 chr12 126235720 126236009 -17550446 - MER7C DNA MER2_type -2429 599 294 2135 110 13 0 chr12 126236009 126236308 -17550147 + AluSx SINE Alu 1 303 -9 3392 151 2 63 chr12 126236308 126236490 -17549965 - MER7C DNA MER2_type -2734 294 174 2295 56 0 0 chr12 126236490 126236776 -17549679 + AluY SINE Alu 1 286 -25 3392 151 2 63 chr12 126236776 126236938 -17549517 - MER7C DNA MER2_type -2854 174 4 717 258 49 33 chr12 126236938 126236987 -17549468 + MIR SINE MIR 202 260 -2 255 293 88 96 chr12 126237018 126237267 -17549188 - L2 LINE L2 0 3272 3026 2672 99 3 3 chr12 126237352 126237727 -17548728 - L1PB1 LINE L1 -1 6150 5776 278 67 33 33 chr12 126237727 126237787 -17548668 + (TA)n Simple_repeat Simple_repeat 2 61 0 356 116 70 29 chr12 126237937 126238109 -17548346 + (TA)n Simple_repeat Simple_repeat 1 179 0 588 140 14 35 chr12 126238114 126238228 -17548227 - L1PA8A LINE L1 -346 5785 5675 3541 164 57 157 chr12 126238502 126238665 -17547790 + L1MC4 LINE L1 6915 7093 -949 1759 153 0 25 chr12 126238665 126238979 -17547476 + AluJo SINE Alu 1 306 -6 3541 164 57 157 chr12 126238979 126239010 -17547445 + L1MC4 LINE L1 7093 7126 -916 357 206 16 0 chr12 126239010 126239073 -17547382 + FRAM SINE Alu 59 122 -44 237 143 0 0 chr12 126239070 126239105 -17547350 - Alu SINE Alu -31 102 68 * 3541 164 57 157 chr12 126239073 126239921 -17546534 + L1MC4 LINE L1 7126 7884 -158 524 55 0 14 chr12 126239921 126239994 -17546461 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 3541 164 57 157 chr12 126239994 126240134 -17546321 + L1MC4 LINE L1 7884 8036 -6 454 308 6 52 chr12 126240961 126241133 -17545322 - MIR SINE MIR -44 218 55 530 243 130 17 chr12 126241546 126241723 -17544732 + MIR SINE MIR 6 202 -60 772 263 45 28 chr12 126242341 126242588 -17543867 - MIR SINE MIR 0 262 12 202 256 98 49 chr12 126242602 126242719 -17543736 + MIR SINE MIR 40 162 -46 6128 123 17 10 chr12 126242730 126242920 -17543535 + L1MA7 LINE L1 5096 5283 -1008 9267 101 7 7 chr12 126242920 126245066 -17541389 + L1PA8 LINE L1 4035 6164 -8 6128 123 17 10 chr12 126245066 126246026 -17540429 + L1MA7 LINE L1 5283 6291 0 973 289 76 11 chr12 126246205 126246562 -17539893 - LTR16C LTR ERVL 0 491 112 205 318 32 0 chr12 126246753 126246816 -17539639 - MIR SINE MIR -102 106 42 2415 100 0 7 chr12 126247398 126247707 -17538748 + AluSx SINE Alu 1 307 -5 27 81 0 0 chr12 126247770 126247832 -17538623 + AT_rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr12 126247891 126247923 -17538532 + AT_rich Low_complexity Low_complexity 1 32 0 3090 134 4 6 chr12 126247926 126248411 -17538044 - L1PA16 LINE L1 -1 6165 5682 2767 86 8 5 chr12 126248419 126248793 -17537662 + THE1C LTR MaLR 1 375 0 892 191 8 71 chr12 126250596 126250848 -17535607 - MER106A DNA MER1_type 0 236 1 2952 72 13 0 chr12 126250870 126251259 -17535196 + L1PA13 LINE L1 5770 6163 0 450 0 0 0 chr12 126251378 126251428 -17535027 + (TG)n Simple_repeat Simple_repeat 2 51 0 2280 115 0 0 chr12 126251782 126252078 -17534377 + AluSx SINE Alu 1 296 -16 1249 120 0 0 chr12 126252078 126252245 -17534210 + AluSg/x SINE Alu 134 300 -12 16111 119 18 10 chr12 126252658 126254199 -17532256 + Tigger1 DNA MER2_type 1 1572 -846 2330 116 0 0 chr12 126254199 126254500 -17531955 + AluSx SINE Alu 1 301 -11 16111 119 18 10 chr12 126254500 126255355 -17531100 + Tigger1 DNA MER2_type 1572 2418 0 473 235 48 42 chr12 126255360 126255526 -17530929 + MER112 DNA MER1_type 86 252 -8 308 288 63 36 chr12 126255528 126255639 -17530816 - MIR3 SINE MIR -48 160 47 1297 186 9 0 chr12 126256649 126256870 -17529585 + MER58A DNA MER1_type 1 223 -1 2673 143 10 31 chr12 126256888 126257253 -17529202 - L1MB3 LINE L1 -2 6181 5827 2175 113 7 3 chr12 126257253 126257546 -17528909 + AluSx SINE Alu 1 294 -18 2673 143 10 31 chr12 126257546 126257661 -17528794 - L1MB3 LINE L1 -356 5827 5711 894 221 32 8 chr12 126257772 126258021 -17528434 + Charlie5 DNA MER1_type 2330 2584 -28 890 216 105 0 chr12 126258034 126258224 -17528231 - MER58A DNA MER1_type 0 224 15 330 298 0 58 chr12 126259038 126259229 -17527226 + (CACAT)n Simple_repeat Simple_repeat 1 180 0 * 475 223 0 72 chr12 126259124 126259317 -17527138 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 257 256 7 66 chr12 126259275 126259412 -17527043 + (CACAT)n Simple_repeat Simple_repeat 1 129 0 * 218 310 109 16 chr12 126259799 126259983 -17526472 - L2 LINE L2 0 3313 3113 2192 107 3 10 chr12 126260012 126260310 -17526145 + AluSq SINE Alu 1 296 -17 3798 30 0 0 chr12 126260321 126260756 -17525699 - L1PA3 LINE L1 -3 6152 5718 399 278 186 20 chr12 126261086 126261334 -17525121 - L2 LINE L2 -515 2799 2511 338 285 73 22 chr12 126261764 126261901 -17524554 - MIR SINE MIR -70 192 49 549 253 7 143 chr12 126262113 126262406 -17524049 + MIR SINE MIR 7 259 -3 499 247 60 30 chr12 126262781 126262947 -17523508 + MIR SINE MIR 20 190 -72 487 281 105 72 chr12 126262944 126263250 -17523205 - L2 LINE L2 0 3313 2998 * 2933 144 40 11 chr12 126263466 126263988 -17522467 + L1MB5 LINE L1 5626 6162 -12 188 241 38 106 chr12 126264061 126264297 -17522158 - L2 LINE L2 -183 3089 2870 1017 87 0 8 chr12 126264328 126264455 -17522000 - AluSg SINE Alu -29 281 156 487 129 0 0 chr12 126264455 126264525 -17521930 - AluSg SINE Alu -239 71 2 2330 46 0 76 chr12 126264559 126264887 -17521568 + AluY SINE Alu 1 303 -8 1922 122 56 0 chr12 126264946 126265233 -17521222 + AluSx SINE Alu 1 303 -9 227 331 44 0 chr12 126265993 126266129 -17520326 - L2 LINE L2 -623 2691 2550 418 213 32 0 chr12 126266210 126266304 -17520151 - MIR SINE MIR -86 176 80 434 303 7 7 chr12 126266932 126267077 -17519378 + MIR SINE MIR 108 252 -10 2294 117 0 0 chr12 126267198 126267496 -17518959 + AluSq SINE Alu 2 299 -14 1533 206 97 48 chr12 126267579 126267984 -17518471 + MLT1C LTR MaLR 38 467 0 2511 48 3 32 chr12 126268112 126268422 -17518033 + AluY SINE Alu 1 301 -10 649 110 0 20 chr12 126268536 126268636 -17517819 + MER4A LTR ERV1 1 98 -566 * 1947 133 8 21 chr12 126268632 126268986 -17517469 + MER4A LTR ERV1 257 664 0 353 297 31 8 chr12 126268986 126269114 -17517341 - MIR SINE MIR -11 251 121 357 226 20 0 chr12 126269266 126269368 -17517087 + (CA)n Simple_repeat Simple_repeat 2 105 0 366 203 20 0 chr12 126269381 126269534 -17516921 + (CA)n Simple_repeat Simple_repeat 2 157 0 227 194 37 0 chr12 126269547 126269655 -17516800 + (CA)n Simple_repeat Simple_repeat 2 113 0 309 197 22 22 chr12 126269668 126269846 -17516609 + (CA)n Simple_repeat Simple_repeat 2 179 0 185 197 15 0 chr12 126269862 126269928 -17516527 + (CA)n Simple_repeat Simple_repeat 1 67 0 614 274 38 24 chr12 126271040 126271252 -17515203 - MIR SINE MIR 0 262 48 3915 156 33 17 chr12 126271859 126272563 -17513892 - L1MB5 LINE L1 -8 6166 5452 387 279 190 53 chr12 126272589 126272815 -17513640 - MIR SINE MIR -4 258 2 251 239 0 0 chr12 126272852 126272919 -17513536 - MIR SINE MIR -109 153 87 2353 110 14 14 chr12 126272927 126273282 -17513173 + L1PB1 LINE L1 5795 6149 -2 28 0 0 0 chr12 126273282 126273310 -17513145 + AT_rich Low_complexity Low_complexity 1 28 0 893 244 15 24 chr12 126274072 126274277 -17512178 + MER82 DNA MER2_type 1 203 -450 376 125 10 42 chr12 126274281 126274377 -17512078 + (TA)n Simple_repeat Simple_repeat 2 94 0 2169 172 66 27 chr12 126274377 126274818 -17511637 + MER82 DNA MER2_type 196 653 0 255 273 0 50 chr12 126274821 126274920 -17511535 + L2 LINE L2 3168 3261 -52 33 0 0 23 chr12 126274920 126274940 -17511515 + AT_rich Low_complexity Low_complexity 1 20 -23 1708 164 7 17 chr12 126274940 126275232 -17511223 + AluJb SINE Alu 1 289 -23 33 0 0 23 chr12 126275232 126275255 -17511200 + AT_rich Low_complexity Low_complexity 20 43 0 1772 135 95 0 chr12 126275309 126275583 -17510872 - AluSx SINE Alu -12 300 1 630 195 16 0 chr12 126276536 126276659 -17509796 + MIR SINE MIR 48 172 -90 1984 127 69 36 chr12 126276708 126277071 -17509384 + THE1C LTR MaLR 1 375 0 921 171 22 40 chr12 126277215 126277351 -17509104 + Charlie5 DNA MER1_type 2356 2488 -97 3159 153 59 2 chr12 126277351 126277913 -17508542 + L1MB4 LINE L1 5587 6180 0 921 171 22 40 chr12 126277913 126278004 -17508451 + Charlie5 DNA MER1_type 2488 2579 -6 232 309 43 58 chr12 126278089 126278150 -17508305 - L2 LINE L2 -202 3070 3010 2614 107 8 6 chr12 126278150 126278513 -17507942 + THE1B LTR MaLR 1 364 0 232 309 43 58 chr12 126278513 126278590 -17507865 - L2 LINE L2 -262 3010 2934 207 323 81 24 chr12 126278789 126278913 -17507542 + L2 LINE L2 3127 3257 -15 187 245 0 0 chr12 126279278 126279327 -17507128 - L2 LINE L2 -2 3311 3263 2027 152 0 3 chr12 126279467 126279757 -17506698 - AluJb SINE Alu -23 289 1 397 325 50 5 chr12 126279760 126279960 -17506495 - MIR SINE MIR -6 256 48 386 333 0 7 chr12 126280302 126280440 -17506015 - MIR SINE MIR -1 261 125 402 211 39 10 chr12 126280590 126280694 -17505761 + MIR SINE MIR 104 210 -52 23 0 0 0 chr12 126281218 126281241 -17505214 + AT_rich Low_complexity Low_complexity 1 23 0 1127 148 14 45 chr12 126281241 126281343 -17505112 - L1PA16 LINE L1 -9 6157 6053 2478 112 22 3 chr12 126281343 126281700 -17504755 + THE1B LTR MaLR 1 364 0 1127 148 14 45 chr12 126281700 126281820 -17504635 - L1PA16 LINE L1 -113 6053 5942 1572 229 66 94 chr12 126281903 126282325 -17504130 + L1ME LINE L1 242 674 -5406 2466 103 0 0 chr12 126282325 126282637 -17503818 + AluSx SINE Alu 1 312 0 1572 229 66 94 chr12 126282637 126283344 -17503111 + L1ME LINE L1 674 1365 -4715 1242 140 0 0 chr12 126283519 126283712 -17502743 - L1PA13 LINE L1 0 6163 5971 2113 112 0 0 chr12 126283728 126284005 -17502450 + AluSq SINE Alu 1 277 -36 1877 78 4 0 chr12 126284006 126284238 -17502217 + AluSp SINE Alu 65 297 -16 304 304 179 19 chr12 126284247 126284510 -17501945 + L2 LINE L2 3009 3313 0 2116 132 0 0 chr12 126284545 126284841 -17501614 + AluSx SINE Alu 1 296 -16 511 274 75 72 chr12 126285221 126285542 -17500913 + L3 LINE CR1 1212 1533 -44 427 207 11 0 chr12 126285585 126285672 -17500783 - MER103 DNA DNA -16 150 63 1953 136 0 36 chr12 126285705 126286007 -17500448 - AluSx SINE Alu -21 291 1 768 231 29 0 chr12 126286108 126286281 -17500174 - MER5A DNA MER1_type -1 188 11 409 290 28 11 chr12 126286605 126286781 -17499674 - MIR SINE MIR -36 226 48 275 295 0 57 chr12 126286955 126287060 -17499395 - L2 LINE L2 -38 3234 3136 719 276 122 33 chr12 126287208 126287316 -17499139 + L2 LINE L2 2361 2458 -855 4249 107 59 5 chr12 126287316 126287945 -17498510 - MER4A LTR ERV1 0 664 2 719 276 122 33 chr12 126287945 126288718 -17497737 + L2 LINE L2 2458 3313 0 21 0 0 0 chr12 126288725 126288746 -17497709 + AT_rich Low_complexity Low_complexity 1 21 0 279 262 58 10 chr12 126288774 126288877 -17497578 - L2 LINE L2 -557 2757 2650 1909 133 3 43 chr12 126289249 126289571 -17496884 + AluJb SINE Alu 1 309 -3 429 301 29 17 chr12 126289595 126289768 -17496687 + MIR SINE MIR 70 244 -18 274 241 14 0 chr12 126290056 126290201 -17496254 + (CA)n Simple_repeat Simple_repeat 1 147 0 198 264 0 0 chr12 126290224 126290330 -17496125 + (CA)n Simple_repeat Simple_repeat 2 107 0 243 256 17 0 chr12 126290383 126290559 -17495896 + (CA)n Simple_repeat Simple_repeat 1 179 0 518 307 0 0 chr12 126290593 126290769 -17495686 + (CA)n Simple_repeat Simple_repeat 2 177 0 216 260 35 0 chr12 126290853 126291026 -17495429 + (CA)n Simple_repeat Simple_repeat 1 179 0 347 256 9 0 chr12 126291068 126291507 -17494948 + (CA)n Simple_repeat Simple_repeat 1 443 0 368 220 11 22 chr12 126291548 126291730 -17494725 + (CA)n Simple_repeat Simple_repeat 1 180 0 289 259 13 0 chr12 126291747 126291973 -17494482 + (CA)n Simple_repeat Simple_repeat 1 229 0 1845 157 64 0 chr12 126292825 126293105 -17493350 - AluJo SINE Alu -14 298 1 1525 178 7 27 chr12 126293133 126293425 -17493030 - AluJo SINE Alu -26 286 1 441 301 63 0 chr12 126293426 126293569 -17492886 + MIR SINE MIR 46 197 -65 362 279 124 39 chr12 126293737 126293866 -17492589 + MIR SINE MIR 12 151 -57 419 331 8 8 chr12 126294118 126294248 -17492207 - L2 LINE L2 -2 3270 3141 3204 174 14 2 chr12 126294273 126294847 -17491608 + L1MB5 LINE L1 5585 6165 -9 1466 168 24 34 chr12 126294847 126295145 -17491310 - AluJo SINE Alu -17 295 1 2096 106 0 0 chr12 126295545 126295852 -17490603 + AluSx SINE Alu 1 307 0 22 0 0 0 chr12 126295904 126295926 -17490529 + AT_rich Low_complexity Low_complexity 1 22 0 2450 173 37 39 chr12 126295926 126296414 -17490041 + L1MB4 LINE L1 5643 6131 -49 2136 90 10 3 chr12 126296414 126296715 -17489740 + AluSx SINE Alu 1 303 -9 2450 173 37 39 chr12 126296715 126296765 -17489690 + L1MB4 LINE L1 6131 6180 0 509 255 183 5 chr12 126296819 126297027 -17489428 + MIR SINE MIR 18 262 0 2432 123 65 70 chr12 126297712 126297772 -17488683 - MSTA LTR MaLR 0 428 369 4235 47 8 13 chr12 126297772 126298306 -17488149 - L1PA8 LINE L1 0 6172 5642 1767 143 0 57 chr12 126298309 126298624 -17487831 - AluSx SINE Alu -15 297 1 2432 123 65 70 chr12 126298624 126298989 -17487466 - MSTA LTR MaLR -61 367 1 1957 178 40 101 chr12 126299207 126299713 -17486742 - MLT1D LTR MaLR -30 475 1 392 167 11 33 chr12 126299719 126299809 -17486646 + MIR SINE MIR 98 184 -62 2354 67 0 13 chr12 126300616 126300930 -17485525 + AluY SINE Alu 1 310 -1 591 244 17 23 chr12 126300979 126301151 -17485304 - MIR SINE MIR -72 190 20 849 193 53 12 chr12 126301189 126301232 -17485223 + MER58A DNA MER1_type 47 87 -2333 2169 92 3 16 chr12 126301232 126301538 -17484917 - AluSx SINE Alu -10 302 1 849 193 53 12 chr12 126301538 126301665 -17484790 + MER58A DNA MER1_type 87 224 0 612 179 57 0 chr12 126302205 126302311 -17484144 + MER81 DNA DNA 1 112 -2 660 276 16 11 chr12 126302569 126302754 -17483701 + MIR SINE MIR 56 241 -21 347 165 0 165 chr12 126302830 126302895 -17483560 + MER5A DNA MER1_type 13 57 -132 2107 138 0 0 chr12 126302895 126303207 -17483248 + AluSx SINE Alu 1 312 0 347 165 0 165 chr12 126303207 126303244 -17483211 + MER5A DNA MER1_type 57 98 -91 651 235 47 0 chr12 126303455 126303604 -17482851 + MER5B DNA MER1_type 20 175 -3 1658 180 24 9 chr12 126303708 126304047 -17482408 - L1MB5 LINE L1 -16 6158 5815 424 202 31 31 chr12 126304661 126304790 -17481665 - MER103 DNA DNA -6 160 32 559 281 6 38 chr12 126304867 126305027 -17481428 - L2 LINE L2 0 3313 3159 417 248 37 9 chr12 126305420 126305529 -17480926 + MER5A DNA MER1_type 77 188 -1 656 258 0 7 chr12 126305621 126305776 -17480679 + MIR SINE MIR 92 245 -17 1147 216 89 66 chr12 126305965 126306390 -17480065 + MLT1J1 LTR MaLR 12 446 0 745 296 69 53 chr12 126306397 126306458 -17479997 + L2 LINE L2 2930 2989 -324 930 143 4 115 chr12 126306458 126306702 -17479753 - MER20 DNA MER1_type 0 219 3 745 296 69 53 chr12 126306702 126307018 -17479437 + L2 LINE L2 2989 3313 0 215 0 85 43 chr12 126307335 126307382 -17479073 + T-rich Low_complexity Low_complexity 1 49 0 1710 179 0 7 chr12 126307501 126307808 -17478647 - AluJo SINE Alu -7 305 1 216 0 0 0 chr12 126307966 126307990 -17478465 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 313 289 71 38 chr12 126308310 126308521 -17477934 - L3 LINE CR1 -176 1401 1184 1113 175 0 0 chr12 126308562 126308751 -17477704 + MER5A DNA MER1_type 1 189 0 399 273 9 9 chr12 126308778 126308888 -17477567 + MIR SINE MIR 104 213 -49 1578 170 12 9 chr12 126309319 126309646 -17476809 + MER33 DNA MER1_type 1 319 -5 5910 132 52 21 chr12 126309803 126311594 -17474861 + L1MA5A LINE L1 4447 6296 -1 379 313 0 0 chr12 126311958 126312054 -17474401 + MER5A DNA MER1_type 9 104 -85 495 258 39 20 chr12 126312060 126312299 -17474156 + L1MC4a LINE L1 5215 5455 -711 873 262 79 29 chr12 126312311 126312651 -17473804 + L1MC4a LINE L1 5574 5930 -1878 459 314 21 84 chr12 126312663 126312893 -17473562 - L2 LINE L2 0 3313 3070 2129 109 0 0 chr12 126312893 126313186 -17473269 + AluSg SINE Alu 4 296 -14 450 0 0 0 chr12 126313186 126313236 -17473219 + (TG)n Simple_repeat Simple_repeat 2 51 0 459 314 21 84 chr12 126313236 126313291 -17473164 - L2 LINE L2 -241 3072 3045 1430 245 174 20 chr12 126313291 126313699 -17472756 + MLT1G1 LTR MaLR 112 582 -13 206 308 0 64 chr12 126313870 126313948 -17472507 + L2 LINE L2 3191 3263 -9 487 270 18 31 chr12 126313955 126314118 -17472337 - MIR SINE MIR -63 199 39 195 42 0 0 chr12 126314540 126314564 -17471891 + (TC)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr12 126314798 126314831 -17471624 + AT_rich Low_complexity Low_complexity 1 33 0 2136 119 0 0 chr12 126315014 126315316 -17471139 + AluSx SINE Alu 1 302 -10 213 323 105 53 chr12 126315362 126315495 -17470960 + MIR SINE MIR 7 146 -116 423 296 74 0 chr12 126315565 126315700 -17470755 + MIR SINE MIR 80 224 -38 225 367 0 0 chr12 126315730 126315820 -17470635 + MIR SINE MIR 163 252 -10 268 346 8 16 chr12 126315997 126316124 -17470331 + L3 LINE CR1 1134 1259 -318 262 261 80 75 chr12 126316130 126316318 -17470137 + L2 LINE L2 3041 3229 -84 221 282 87 19 chr12 126316368 126316471 -17469984 + L3 LINE CR1 1349 1458 -119 570 260 0 7 chr12 126316665 126316811 -17469644 + L1MA10 LINE L1 6190 6334 0 317 187 99 22 chr12 126317234 126317325 -17469130 + L1ME4a LINE L1 6024 6121 0 987 255 42 8 chr12 126318157 126318396 -17468059 + MIR SINE MIR 16 262 0 2598 146 26 5 chr12 126318436 126318860 -17467595 + Tigger2a DNA MER2_type 2 434 0 285 280 80 47 chr12 126318915 126319028 -17467427 - L2 LINE L2 -1 3312 3191 4303 83 5 0 chr12 126319028 126319579 -17466876 + MER41A LTR ERV1 1 554 0 285 280 80 47 chr12 126319579 126319615 -17466840 - L2 LINE L2 -122 3191 3158 929 129 70 33 chr12 126319616 126319869 -17466586 - Tigger5 DNA MER2_type 0 2599 2103 381 152 0 0 chr12 126319861 126319927 -17466528 + Tigger5 DNA MER2_type 2096 2161 -162 * 770 200 52 19 chr12 126319922 126320077 -17466378 - Tigger5 DNA MER2_type -2163 160 1 1055 305 147 28 chr12 126320120 126320830 -17465625 - L2 LINE L2 -168 3104 2307 442 237 23 38 chr12 126320830 126320961 -17465494 - L2 LINE L2 -1253 2061 1933 4219 158 5 9 chr12 126321004 126321751 -17464704 + L1MA4 LINE L1 5552 6295 -5 2494 50 0 3 chr12 126321770 126322073 -17464382 + AluY SINE Alu 1 302 -9 1836 140 10 10 chr12 126322093 126322393 -17464062 + AluSx SINE Alu 1 300 -12 189 230 0 0 chr12 126322518 126322592 -17463863 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 682 333 155 13 chr12 126322612 126323000 -17463455 + L2 LINE L2 2871 3313 0 816 209 0 0 chr12 126323000 126323279 -17463176 + (TGGA)n Simple_repeat Simple_repeat 1 279 0 217 50 25 25 chr12 126323324 126323364 -17463091 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 246 62 0 0 chr12 126323893 126323925 -17462530 + (CA)n Simple_repeat Simple_repeat 2 33 0 489 112 4 14 chr12 126323998 126324248 -17462207 + AluJb SINE Alu 1 300 -12 595 293 112 0 chr12 126324585 126324773 -17461682 + MIR SINE MIR 11 219 -43 722 232 96 18 chr12 126324898 126325118 -17461337 - MIR SINE MIR -16 246 10 318 280 43 11 chr12 126325322 126325415 -17461040 + L2 LINE L2 3160 3255 -17 403 233 139 16 chr12 126325639 126325768 -17460687 - MIR SINE MIR -6 256 112 250 366 0 0 chr12 126326668 126326750 -17459705 + L2 LINE L2 3232 3313 0 810 250 6 0 chr12 126326828 126326992 -17459463 - MER58B DNA MER1_type 0 341 177 1779 142 16 16 chr12 126327110 126327185 -17459270 + L1PA16 LINE L1 5855 5929 -237 2013 128 0 3 chr12 126327185 126327482 -17458973 + AluSx SINE Alu 5 300 -12 1779 142 16 16 chr12 126327482 126327709 -17458746 + L1PA16 LINE L1 5928 6157 -9 26 0 0 0 chr12 126327709 126327735 -17458720 + AT_rich Low_complexity Low_complexity 1 26 0 425 211 62 23 chr12 126328871 126328999 -17457456 - MIR SINE MIR -55 207 75 194 299 15 30 chr12 126328992 126329059 -17457396 + L2 LINE L2 3207 3272 0 * 2083 102 3 0 chr12 126329198 126329504 -17456951 + AluSq SINE Alu 1 307 0 293 303 78 61 chr12 126329641 126329872 -17456583 - MIR SINE MIR 0 262 28 313 286 65 76 chr12 126330293 126330478 -17455977 + MIR SINE MIR 57 239 -23 1575 176 3 24 chr12 126330568 126330864 -17455591 - AluJo SINE Alu -22 290 1 1583 138 0 43 chr12 126331075 126331357 -17455098 + AluJb SINE Alu 34 303 -9 234 238 188 12 chr12 126331966 126332046 -17454409 - L2 LINE L2 -286 3027 2934 211 324 65 22 chr12 126332220 126332405 -17454050 - MIR3 SINE MIR 0 208 16 1534 111 0 0 chr12 126332554 126332762 -17453693 - AluY SINE Alu -103 208 1 277 266 53 11 chr12 126332783 126332877 -17453578 + MIR SINE MIR 32 129 -133 182 286 11 33 chr12 126332985 126333076 -17453379 - L3b LINE CR1 -148 1435 1347 1160 216 5 0 chr12 126333139 126333361 -17453094 - MER58A DNA MER1_type -1 223 1 578 276 47 55 chr12 126333594 126333851 -17452604 + MIR SINE MIR 8 262 0 1223 138 32 28 chr12 126334642 126334859 -17451596 + MER20 DNA MER1_type 1 218 -1 255 228 204 43 chr12 126336237 126336399 -17450056 + MIR3 SINE MIR 17 204 -4 2037 100 7 4 chr12 126337280 126337561 -17448894 + AluSg SINE Alu 14 295 -15 650 215 93 61 chr12 126338264 126338478 -17447977 + MIR SINE MIR 35 255 -7 748 190 166 6 chr12 126338574 126338737 -17447718 + MER5A DNA MER1_type 1 189 0 364 254 55 0 chr12 126338833 126338943 -17447512 - L2 LINE L2 -236 3036 2921 401 226 30 107 chr12 126339581 126339749 -17446706 - MIR SINE MIR 0 262 108 371 263 74 40 chr12 126339821 126339996 -17446459 + L2 LINE L2 2708 2888 -426 1633 296 47 35 chr12 126340037 126340607 -17445848 + MLT2E LTR ERVL 48 624 -4 410 227 158 9 chr12 126340675 126340906 -17445549 + MLT1F LTR MaLR 190 468 -74 641 142 60 98 chr12 126341288 126341410 -17445045 + LTR45B LTR ERV1 314 428 -61 2297 68 0 0 chr12 126341410 126341703 -17444752 + AluY SINE Alu 1 293 -18 641 142 60 98 chr12 126341703 126341763 -17444692 + LTR45B LTR ERV1 428 489 0 411 225 11 101 chr12 126341980 126342097 -17444358 + LTR45 LTR ERV1 364 461 -64 2189 80 0 0 chr12 126342097 126342385 -17444070 + AluY SINE Alu 6 293 -18 411 225 11 101 chr12 126342385 126342445 -17444010 + LTR45 LTR ERV1 461 525 0 438 229 28 37 chr12 126342585 126342694 -17443761 + L2 LINE L2 2938 3045 -268 1230 184 43 122 chr12 126342699 126342900 -17443555 + MLT2C1 LTR ERVL 8 161 -236 1650 166 10 38 chr12 126342900 126343213 -17443242 - AluJb SINE Alu -4 308 5 1230 184 43 122 chr12 126343213 126343430 -17443025 + MLT2C1 LTR ERVL 161 393 -4 1833 140 0 33 chr12 126343520 126343827 -17442628 - AluJo SINE Alu -11 301 5 825 240 34 10 chr12 126343874 126344078 -17442377 + MER3 DNA MER1_type 1 209 0 190 265 72 36 chr12 126344116 126344199 -17442256 + L2 LINE L2 3187 3272 0 241 259 0 17 chr12 126345186 126345244 -17441211 + GA-rich Low_complexity Low_complexity 1 57 0 218 213 21 0 chr12 126345400 126345447 -17441008 + GA-rich Low_complexity Low_complexity 4 51 0 518 220 0 8 chr12 126345971 126346103 -17440352 + (ATGGTG)n Simple_repeat Simple_repeat 1 131 0 594 314 16 11 chr12 126346103 126346294 -17440161 - MIR SINE MIR -52 210 19 348 272 73 122 chr12 126346337 126346624 -17439831 + L2 LINE L2 3041 3313 0 307 87 29 29 chr12 126346901 126346970 -17439485 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 225 308 60 26 chr12 126347483 126347600 -17438855 - L2 LINE L2 -203 3069 2949 1445 153 4 8 chr12 126347784 126348025 -17438430 + AluJb SINE Alu 57 296 -16 440 283 26 9 chr12 126348028 126348141 -17438314 - L2 LINE L2 -17 3296 3182 488 188 0 0 chr12 126348512 126348592 -17437863 + AluJ/FLAM SINE Alu 3 82 -230 469 292 0 0 chr12 126349282 126349402 -17437053 + MIR SINE MIR 53 172 -90 1915 74 8 16 chr12 126350030 126350320 -17436135 - AluSq SINE Alu 0 313 36 1765 149 3 3 chr12 126350656 126350938 -17435517 - AluJo SINE Alu -30 282 1 668 263 38 29 chr12 126351215 126351424 -17435031 - MIR SINE MIR -39 223 13 457 333 38 38 chr12 126351587 126351797 -17434658 - Charlie8 DNA MER1_type -2207 210 1 358 229 75 112 chr12 126352306 126352494 -17433961 + MIR SINE MIR 48 228 -34 1997 110 48 0 chr12 126352718 126353010 -17433445 - AluSx SINE Alu -6 306 1 2183 122 0 0 chr12 126353023 126353335 -17433120 - AluJo SINE Alu 0 312 1 428 202 28 55 chr12 126353490 126353599 -17432856 - MER3 DNA MER1_type -103 106 1 244 221 0 7 chr12 126353600 126353667 -17432788 - MIR SINE MIR -95 113 52 345 175 0 0 chr12 126353727 126353784 -17432671 - L2 LINE L2 -5 3267 3211 797 289 46 43 chr12 126354167 126354287 -17432168 + L1MC4 LINE L1 5489 5607 -2201 2155 116 0 0 chr12 126354287 126354597 -17431858 - AluSx SINE Alu -2 310 1 797 289 46 43 chr12 126354597 126354867 -17431588 + L1MC4 LINE L1 5607 5880 -1928 2450 48 0 7 chr12 126354955 126355264 -17431191 - AluY SINE Alu -4 307 1 1044 146 0 0 chr12 126355639 126355803 -17430652 - FRAM SINE Alu -12 164 1 35 54 0 0 chr12 126355816 126355872 -17430583 + AT_rich Low_complexity Low_complexity 1 56 0 813 125 0 0 chr12 126355961 126356081 -17430374 + AluJb SINE Alu 1 120 -192 198 0 0 0 chr12 126356081 126356103 -17430352 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 460 196 39 29 chr12 126356112 126356214 -17430241 + FRAM SINE Alu 37 139 -37 189 0 0 0 chr12 126356220 126356241 -17430214 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2411 60 0 0 chr12 126356305 126356605 -17429850 - AluY SINE Alu -11 300 1 894 275 102 51 chr12 126356606 126357133 -17429322 + MLT1K LTR MaLR 33 586 -2 2276 193 63 4 chr12 126357187 126357664 -17428791 - MLT1D LTR MaLR 0 505 1 379 275 200 46 chr12 126357829 126358069 -17428386 + L1MC4 LINE L1 6458 6734 -1308 1865 199 123 7 chr12 126358098 126358514 -17427941 - MLT1C LTR MaLR -3 464 1 263 167 0 0 chr12 126358609 126358657 -17427798 + Alu SINE Alu 259 306 -2 29 0 0 0 chr12 126358657 126358686 -17427769 + AT_rich Low_complexity Low_complexity 1 29 0 815 189 0 0 chr12 126359102 126359234 -17427221 - FLAM_C SINE Alu -1 132 1 1366 195 113 66 chr12 126359404 126359616 -17426839 - MER113 DNA MER1_type? -1 520 319 1618 151 3 55 chr12 126359616 126359928 -17426527 - AluJb SINE Alu -8 304 9 1366 195 113 66 chr12 126359928 126360131 -17426324 - MER113 DNA MER1_type? -202 319 76 2170 96 3 0 chr12 126360131 126360432 -17426023 + AluSp SINE Alu 1 302 -11 1366 195 113 66 chr12 126360432 126360512 -17425943 - MER113 DNA MER1_type? -445 76 1 1859 159 0 0 chr12 126360616 126360917 -17425538 + AluJb SINE Alu 1 301 -11 1005 235 217 54 chr12 126361002 126361462 -17424993 + MLT1H LTR MaLR 15 549 0 2060 114 17 0 chr12 126361728 126362025 -17424430 + AluSx SINE Alu 1 302 -10 450 235 52 20 chr12 126362214 126362367 -17424088 - L1MC4a LINE L1 -1861 5947 5790 457 350 34 36 chr12 126362465 126362715 -17423740 - MIR SINE MIR -1 261 1 354 206 36 8 chr12 126362833 126362947 -17423508 + MIR SINE MIR 77 141 -67 2053 121 7 7 chr12 126362952 126363259 -17423196 + AluSx SINE Alu 1 307 -5 651 269 26 42 chr12 126363713 126363906 -17422549 - MIR SINE MIR -35 227 38 1954 119 3 26 chr12 126363940 126364243 -17422212 + AluSx SINE Alu 1 296 -16 381 315 61 38 chr12 126364243 126364456 -17421999 + L1ME4a LINE L1 5870 6087 -34 701 191 0 0 chr12 126364464 126364579 -17421876 - FLAM_A SINE Alu -17 125 11 312 296 121 30 chr12 126364731 126364863 -17421592 - MIR SINE MIR -31 231 88 1385 149 8 15 chr12 126364952 126365213 -17421242 + AluJo SINE Alu 40 298 -14 281 305 42 0 chr12 126365214 126365302 -17421153 - MER5A DNA MER1_type -56 133 25 2049 109 24 0 chr12 126365702 126365996 -17420459 + AluSx SINE Alu 2 302 -10 2196 101 0 0 chr12 126366097 126366393 -17420062 - AluSx SINE Alu -16 296 1 771 241 93 21 chr12 126366511 126366748 -17419707 + MER5C DNA MER1_type 71 324 0 370 281 36 46 chr12 126366834 126366862 -17419593 - MIR SINE MIR -64 144 117 1897 158 0 13 chr12 126366862 126367165 -17419290 - AluJo SINE Alu -13 299 1 370 281 36 46 chr12 126367165 126367318 -17419137 - MIR SINE MIR -91 117 2 22 0 0 0 chr12 126367964 126367986 -17418469 + AT_rich Low_complexity Low_complexity 1 22 0 229 275 64 16 chr12 126368079 126368210 -17418245 - MIR SINE MIR -63 145 51 372 268 218 50 chr12 126368293 126368610 -17417845 + L2 LINE L2 2933 3302 -11 245 176 55 11 chr12 126369361 126369436 -17417019 + (TA)n Simple_repeat Simple_repeat 1 82 -13 1748 138 78 38 chr12 126369436 126369725 -17416730 - MER46B DNA MER2_type -2495 236 54 1978 91 0 0 chr12 126369725 126369978 -17416477 + AluSx SINE Alu 39 291 -21 1748 138 78 38 chr12 126369978 126370035 -17416420 - MER46B DNA MER2_type -2677 54 1 245 176 55 11 chr12 126370035 126370050 -17416405 + (TA)n Simple_repeat Simple_repeat 82 95 0 559 259 114 0 chr12 126370160 126370326 -17416129 - MIR SINE MIR 0 262 78 299 214 86 14 chr12 126370392 126370462 -17415993 - MER5A DNA MER1_type -5 184 110 * 337 249 42 103 chr12 126370405 126370570 -17415885 + MER5A DNA MER1_type 35 189 0 1443 124 0 9 chr12 126372152 126372370 -17414085 + AluJb SINE Alu 88 303 -9 2184 87 3 0 chr12 126372517 126372804 -17413651 + AluSp SINE Alu 21 308 -5 23 0 0 0 chr12 126372865 126372888 -17413567 + AT_rich Low_complexity Low_complexity 1 23 0 590 267 0 0 chr12 126372897 126373028 -17413427 - MER3 DNA MER1_type -55 154 24 204 40 0 0 chr12 126373343 126373368 -17413087 + (T)n Simple_repeat Simple_repeat 1 25 0 1699 79 0 13 chr12 126373376 126373603 -17412852 - AluSx SINE Alu -88 224 1 260 241 0 0 chr12 126373606 126373660 -17412795 - AluJ/monomer SINE Alu -6 302 249 186 118 0 0 chr12 126373789 126373823 -17412632 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 340 244 182 27 chr12 126374238 126374399 -17412056 - MIR SINE MIR -62 146 10 292 251 32 144 chr12 126374753 126374940 -17411515 - L2 LINE L2 -99 3173 3008 257 302 0 16 chr12 126375041 126375104 -17411351 + L3 LINE CR1 1511 1572 -5 231 88 0 0 chr12 126375123 126375157 -17411298 + (TCCA)n Simple_repeat Simple_repeat 2 35 0 921 125 0 0 chr12 126375189 126375411 -17411044 + (TCCA)n Simple_repeat Simple_repeat 1 222 0 806 170 0 6 chr12 126375425 126375753 -17410702 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 251 297 40 0 chr12 126375955 126376029 -17410426 + MIR SINE MIR 180 256 -6 309 300 25 0 chr12 126376030 126376110 -17410345 - L2 LINE L2 -31 3241 3160 239 280 168 9 chr12 126376209 126376316 -17410139 - L2 LINE L2 -295 2977 2854 1440 122 0 0 chr12 126376328 126376533 -17409922 + AluSg/x SINE Alu 102 306 -6 301 292 31 31 chr12 126376533 126376663 -17409792 - L2 LINE L2 -473 2841 2712 208 216 0 0 chr12 126377661 126377711 -17408744 + MIR SINE MIR 79 129 -79 291 260 26 13 chr12 126377775 126377852 -17408603 - MIR SINE MIR -86 122 45 808 259 68 17 chr12 126377887 126378123 -17408332 - MIR SINE MIR -13 249 2 263 235 22 7 chr12 126378166 126378293 -17408162 + (TA)n Simple_repeat Simple_repeat 2 133 -6 1207 92 82 20 chr12 126378293 126378447 -17408008 + L1PA8 LINE L1 5952 6122 -50 2234 78 3 7 chr12 126378447 126378743 -17407712 + AluY SINE Alu 1 295 -16 1207 92 82 20 chr12 126378743 126378783 -17407672 + L1PA8 LINE L1 6122 6158 -14 263 235 22 7 chr12 126378783 126378791 -17407664 + (TA)n Simple_repeat Simple_repeat 133 139 0 363 224 9 84 chr12 126378793 126378900 -17407555 + L1MC4 LINE L1 6614 6712 -1330 226 203 0 31 chr12 126378900 126378964 -17407491 + (TA)n Simple_repeat Simple_repeat 2 63 0 1634 201 55 3 chr12 126378980 126379309 -17407146 + MER7A DNA MER2_type 1 344 -2 316 345 89 20 chr12 126379311 126379514 -17406941 + L1ME4a LINE L1 5903 6119 -2 1799 183 0 0 chr12 126379546 126379858 -17406597 - AluJo SINE Alu 0 312 1 833 139 7 36 chr12 126379868 126380035 -17406420 - FLAM_C SINE Alu 0 133 1 380 266 47 8 chr12 126380221 126380349 -17406106 - MLT1L LTR MaLR -31 584 452 277 245 241 38 chr12 126380436 126380673 -17405782 - MLT1L LTR MaLR -330 285 1 426 202 135 0 chr12 126380968 126381072 -17405383 + L1MB3 LINE L1 5893 6010 -173 1371 191 69 136 chr12 126381075 126381479 -17404976 + MLT1A2 LTR MaLR 10 386 -4 946 104 13 19 chr12 126381493 126381647 -17404808 + L1MB3 LINE L1 6029 6181 -2 300 311 8 61 chr12 126381677 126381809 -17404646 - MIR SINE MIR -67 141 17 1019 220 14 14 chr12 126382358 126382576 -17403879 + MER20 DNA MER1_type 1 218 -1 935 157 10 76 chr12 126382590 126382787 -17403668 - MER5A DNA MER1_type -5 184 1 208 195 0 24 chr12 126383436 126383477 -17402978 + MIR SINE MIR 20 59 -149 2178 107 3 3 chr12 126383768 126384076 -17402379 + AluSq SINE Alu 1 308 -5 746 194 0 8 chr12 126384093 126384222 -17402233 + FLAM_C SINE Alu 5 132 -11 1815 136 36 0 chr12 126384339 126384459 -17401996 + AluJb SINE Alu 1 115 -197 183 42 0 0 chr12 126384459 126384483 -17401972 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1815 136 36 0 chr12 126384483 126384642 -17401813 + AluJb SINE Alu 115 290 -22 1764 151 0 20 chr12 126384651 126384955 -17401500 + AluSq SINE Alu 1 298 -15 1223 187 4 9 chr12 126385188 126385413 -17401042 + MER58A DNA MER1_type 1 224 0 225 0 0 0 chr12 126385423 126385448 -17401007 + (A)n Simple_repeat Simple_repeat 1 25 0 202 260 110 50 chr12 126385509 126385609 -17400846 + L2 LINE L2 3167 3272 0 2037 131 3 0 chr12 126385653 126385951 -17400504 - AluJb SINE Alu -12 300 2 433 277 54 14 chr12 126386153 126386301 -17400154 + MIR SINE MIR 47 200 -62 1139 160 77 65 chr12 126386387 126386540 -17399915 - MER96B DNA MER1_type? 0 417 267 2483 46 0 3 chr12 126386540 126386845 -17399610 - AluY SINE Alu -7 304 1 1139 160 77 65 chr12 126386845 126387016 -17399439 - MER96B DNA MER1_type? -150 267 89 748 184 0 15 chr12 126387019 126387155 -17399300 + FLAM_C SINE Alu 2 135 -8 753 129 81 32 chr12 126387164 126387288 -17399167 + MSTA LTR MaLR 1 130 -245 239 70 0 47 chr12 126387321 126387364 -17399091 + (CCCCCT)n Simple_repeat Simple_repeat 3 43 0 304 139 0 99 chr12 126387369 126387470 -17398985 + MSTA LTR MaLR 199 289 -139 1767 135 7 24 chr12 126387608 126387919 -17398536 + AluSx SINE Alu 1 306 0 518 258 141 55 chr12 126388169 126388263 -17398192 + L1ME4a LINE L1 5513 5598 -523 2198 101 7 3 chr12 126388263 126388569 -17397886 - AluSx SINE Alu -5 307 1 518 258 141 55 chr12 126388569 126388800 -17397655 + L1ME4a LINE L1 5598 5866 -255 1767 166 3 0 chr12 126388819 126389108 -17397347 - AluJo SINE Alu -22 290 1 739 228 0 32 chr12 126389297 126389455 -17397000 + MER20 DNA MER1_type 10 162 -57 1985 107 0 20 chr12 126389475 126389773 -17396682 - AluJo SINE Alu -20 292 1 313 251 261 20 chr12 126390332 126390535 -17395920 + L1ME4a LINE L1 5870 6121 0 370 314 0 8 chr12 126391170 126391291 -17395164 + MIR SINE MIR 53 172 -90 1966 107 10 14 chr12 126391918 126392242 -17394213 - AluSq SINE Alu 0 313 1 428 216 0 29 chr12 126392945 126393096 -17393359 + FLAM_C SINE Alu 38 143 0 646 193 114 24 chr12 126393353 126393519 -17392936 - AluJb SINE Alu -5 307 127 976 140 140 27 chr12 126394202 126394423 -17392032 + AluJo SINE Alu 61 306 -6 2316 81 0 7 chr12 126394476 126394785 -17391670 - AluY SINE Alu -4 307 1 406 286 146 35 chr12 126394785 126394984 -17391471 + L1MEd LINE L1 243 463 -5656 568 186 0 34 chr12 126395048 126395166 -17391289 + L1MA9 LINE L1 6171 6284 -28 939 178 21 11 chr12 126395168 126395359 -17391096 - AluJb SINE Alu 0 312 120 1297 214 8 4 chr12 126395370 126395636 -17390819 + AluSx SINE Alu 3 269 -43 2039 91 32 7 chr12 126395763 126396048 -17390407 - AluSc SINE Alu -17 292 1 1004 90 8 0 chr12 126396048 126396182 -17390273 - AluSq/x SINE Alu -178 135 1 218 71 0 48 chr12 126396588 126396630 -17389825 + (TCC)n Simple_repeat Simple_repeat 3 42 0 258 250 0 0 chr12 126397037 126397085 -17389370 - AluJ/monomer SINE Alu -252 48 1 263 104 0 0 chr12 126397085 126397133 -17389322 + L1MB3 LINE L1 6136 6183 0 925 142 14 0 chr12 126397455 126397596 -17388859 + AluSq/x SINE Alu 1 143 -169 1844 114 37 0 chr12 126397598 126397905 -17388550 + AluSx SINE Alu 1 317 0 578 277 68 52 chr12 126397905 126398154 -17388301 - MIR SINE MIR -2 260 8 1516 196 0 31 chr12 126398259 126398550 -17387905 + AluJb SINE Alu 1 282 -30 186 128 0 0 chr12 126398554 126398593 -17387862 + (TA)n Simple_repeat Simple_repeat 2 40 0 644 133 0 0 chr12 126398794 126398884 -17387571 - AluJ/FLAM SINE Alu -218 94 5 429 255 163 8 chr12 126398996 126399235 -17387220 + L1MEd LINE L1 608 883 -5236 574 314 141 30 chr12 126399413 126399782 -17386673 - L2 LINE L2 -2 3270 2861 636 64 0 0 chr12 126400159 126400237 -17386218 + AluSp/q SINE Alu 221 298 -15 24 67 0 0 chr12 126400332 126400377 -17386078 + AT_rich Low_complexity Low_complexity 1 45 0 1577 158 3 57 chr12 126400417 126400714 -17385741 + AluJo SINE Alu 9 289 -23 1759 91 114 0 chr12 126400836 126401100 -17385355 - AluSx SINE Alu -6 306 13 2753 10 0 0 chr12 126401157 126401466 -17384989 - AluYa5 SINE Alu -2 309 1 931 102 0 0 chr12 126402219 126402366 -17384089 + AluSg/x SINE Alu 156 302 0 801 207 5 88 chr12 126402377 126402520 -17383935 + MER5B DNA MER1_type 2 127 -51 1516 174 46 4 chr12 126402520 126402643 -17383812 + AluJo SINE Alu 1 117 -195 185 83 28 0 chr12 126402643 126402679 -17383776 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1516 174 46 4 chr12 126402679 126402836 -17383619 + AluJo SINE Alu 117 293 -19 801 207 5 88 chr12 126402836 126402885 -17383570 + MER5B DNA MER1_type 127 178 0 715 298 31 55 chr12 126403081 126403407 -17383048 - MER102b DNA MER1_type -12 329 12 1846 175 85 8 chr12 126403470 126403871 -17382584 - L1MB5 LINE L1 0 6174 5743 407 107 53 0 chr12 126403882 126403957 -17382498 - Alu SINE Alu -1 311 233 408 231 127 8 chr12 126404159 126404260 -17382195 - MLT1J1 LTR MaLR -296 150 28 1826 170 3 0 chr12 126404260 126404571 -17381884 + AluJb SINE Alu 1 312 0 408 231 127 8 chr12 126404571 126404603 -17381852 - MLT1J1 LTR MaLR -418 28 1 818 231 151 56 chr12 126404621 126405033 -17381422 - MLT1H LTR MaLR -2 547 97 1305 270 157 24 chr12 126405094 126405407 -17381048 - L2 LINE L2 -193 3120 2850 1662 188 0 0 chr12 126405407 126405711 -17380744 - AluJb SINE Alu -8 304 1 1305 270 157 24 chr12 126405711 126406169 -17380286 - L2 LINE L2 -463 2850 2239 231 200 73 91 chr12 126406170 126406227 -17380228 - L1ME LINE L1 -241 5880 5824 1152 193 0 8 chr12 126406227 126406476 -17379979 - L1MA4 LINE L1 -11 6289 6043 231 200 73 91 chr12 126406476 126406528 -17379927 - L1ME LINE L1 -297 5824 5773 386 254 9 26 chr12 126406533 126406647 -17379808 - AluSg/x SINE Alu -12 288 177 * 416 282 0 16 chr12 126406566 126406690 -17379765 + Alu SINE Alu 177 298 -2 249 33 0 0 chr12 126406743 126406773 -17379682 + (TG)n Simple_repeat Simple_repeat 2 31 0 2187 97 3 3 chr12 126407320 126407619 -17378836 - AluSx SINE Alu -13 299 1 306 65 196 0 chr12 126408185 126408231 -17378224 + MADE1 DNA Mariner 1 55 -25 469 243 174 0 chr12 126408263 126408407 -17378048 - MER5A DNA MER1_type -12 177 9 1864 132 0 7 chr12 126408684 126408965 -17377490 + AluSq SINE Alu 22 300 -13 1766 134 3 39 chr12 126408976 126409105 -17377350 + AluJb SINE Alu 3 135 -177 2396 69 0 7 chr12 126409105 126409411 -17377044 + AluY SINE Alu 1 304 -7 1766 134 3 39 chr12 126409411 126409588 -17376867 + AluJb SINE Alu 135 298 -14 1814 150 0 0 chr12 126409596 126409869 -17376586 + AluJb SINE Alu 1 273 -39 183 42 0 0 chr12 126409885 126409909 -17376546 + (TAA)n Simple_repeat Simple_repeat 1 24 0 455 234 216 28 chr12 126410154 126410408 -17376047 - L1ME LINE L1 -341 5780 5477 2101 110 3 7 chr12 126410558 126410859 -17375596 + AluSx SINE Alu 1 300 -12 249 33 0 0 chr12 126410912 126410942 -17375513 + (TG)n Simple_repeat Simple_repeat 2 31 0 1328 125 20 156 chr12 126411765 126411918 -17374537 + MER33 DNA MER1_type 1 155 -2430 799 133 0 31 chr12 126411918 126412046 -17374409 - FLAM_C SINE Alu -9 124 1 1328 125 20 156 chr12 126412046 126412094 -17374361 + MER33 DNA MER1_type 155 208 -2377 1833 154 3 13 chr12 126412094 126412405 -17374050 - AluJo SINE Alu -4 308 1 2582 48 0 0 chr12 126412413 126412722 -17373733 - AluY SINE Alu -2 309 1 1328 125 20 156 chr12 126412722 126412906 -17373549 + MER33 DNA MER1_type 215 324 0 454 297 14 27 chr12 126413127 126413275 -17373180 + MIR SINE MIR 2 147 -115 775 177 8 0 chr12 126413276 126413406 -17373049 + AluJo SINE Alu 12 142 -170 1933 124 0 0 chr12 126413657 126413939 -17372516 - AluSx SINE Alu -30 282 1 231 217 29 14 chr12 126414028 126414097 -17372358 - MLT1H LTR MaLR -6 589 520 1075 176 10 5 chr12 126414098 126414302 -17372153 - AluJo SINE Alu -23 289 85 718 213 81 182 chr12 126414302 126414374 -17372081 - MLT1H LTR MaLR -57 498 420 2393 110 30 28 chr12 126414374 126414737 -17371718 + THE1B LTR MaLR 1 364 0 718 213 81 182 chr12 126414737 126415218 -17371237 - MLT1H LTR MaLR -135 420 1 1970 112 3 42 chr12 126415328 126415640 -17370815 - AluSq SINE Alu -13 300 1 1624 160 30 3 chr12 126415898 126416198 -17370257 - AluJb SINE Alu -4 308 1 671 237 0 7 chr12 126416485 126416624 -17369831 + AluSc SINE Alu 155 292 -17 759 303 19 62 chr12 126416896 126416931 -17369524 + MLT1K LTR MaLR 9 44 -544 1987 113 27 3 chr12 126416931 126417223 -17369232 - AluSx SINE Alu -11 301 3 759 303 19 62 chr12 126417223 126417507 -17368948 + MLT1K LTR MaLR 44 314 -274 260 343 78 0 chr12 126417619 126417721 -17368734 + MLT1K LTR MaLR 479 588 0 2069 105 23 3 chr12 126417813 126418117 -17368338 - AluSg SINE Alu 0 310 1 3195 176 59 11 chr12 126418206 126418719 -17367736 + L1MB5 LINE L1 5502 6054 -120 2303 95 0 0 chr12 126418719 126419025 -17367430 - AluSg SINE Alu -4 306 1 3195 176 59 11 chr12 126419025 126419153 -17367302 + L1MB5 LINE L1 6054 6174 0 308 333 122 33 chr12 126419174 126419354 -17367101 + MER91A DNA MER1_type 1 196 0 293 148 3 0 chr12 126419866 126419916 -17366539 - FLAM_A SINE Alu -7 126 84 827 183 0 0 chr12 126419991 126420128 -17366327 - FAM SINE Alu -15 170 34 2012 117 47 0 chr12 126420139 126420437 -17366018 - AluSx SINE Alu 0 312 1 839 127 0 47 chr12 126420607 126420757 -17365698 + FLAM_C SINE Alu 1 143 0 1736 132 13 23 chr12 126421824 126422127 -17364328 - AluSx SINE Alu -12 300 1 1426 169 0 0 chr12 126422274 126422505 -17363950 - AluSx SINE Alu -81 231 1 281 283 22 22 chr12 126422550 126422642 -17363813 - MIR SINE MIR -108 154 63 1428 201 120 31 chr12 126422824 126423248 -17363207 - MLT1C LTR MaLR 0 467 6 181 200 57 0 chr12 126424897 126424932 -17361523 - L2 LINE L2 -2 3311 3275 630 248 73 82 chr12 126425093 126425408 -17361047 - MLT1I LTR MaLR 0 409 98 225 0 0 0 chr12 126425452 126425477 -17360978 + (TG)n Simple_repeat Simple_repeat 1 25 0 192 184 0 0 chr12 126425477 126425526 -17360929 + GA-rich Low_complexity Low_complexity 2 50 0 228 343 0 0 chr12 126425557 126425624 -17360831 - L2 LINE L2 -221 3051 2985 1503 99 0 5 chr12 126426306 126426508 -17359947 - AluSx SINE Alu -111 201 1 182 262 0 0 chr12 126426651 126426693 -17359762 - L2 LINE L2 0 3313 3272 3945 165 62 27 chr12 126427099 126427141 -17359314 - L1MB4 LINE L1 0 6180 6141 1744 159 7 14 chr12 126427141 126427437 -17359018 - AluJo SINE Alu -18 294 1 3945 165 62 27 chr12 126427437 126428218 -17358237 - L1MB4 LINE L1 -39 6141 5328 2134 108 0 7 chr12 126428237 126428542 -17357913 - AluSx SINE Alu -9 303 1 1662 131 7 88 chr12 126428546 126428877 -17357578 - AluSx SINE Alu 0 306 1 2174 136 106 0 chr12 126428897 126429028 -17357427 - L1MA9 LINE L1 0 6312 6196 444 67 0 0 chr12 126429028 126429088 -17357367 + (TG)n Simple_repeat Simple_repeat 1 60 0 2174 136 106 0 chr12 126429088 126429361 -17357094 - L1MA9 LINE L1 -116 6196 5865 372 283 80 7 chr12 126429362 126429500 -17356955 - L3 LINE CR1 -154 1423 1276 2299 70 0 10 chr12 126430037 126430335 -17356120 + AluY SINE Alu 2 296 -15 365 131 0 0 chr12 126430336 126430397 -17356058 + MER53 DNA DNA 129 189 0 311 178 0 89 chr12 126430523 126430613 -17355842 - MIR SINE MIR -84 124 43 906 320 129 12 chr12 126430882 126431400 -17355055 + MLT1K LTR MaLR 10 588 0 222 242 0 16 chr12 126431450 126431512 -17354943 + L2 LINE L2 2501 2561 -753 22 0 0 0 chr12 126431546 126431568 -17354887 + AT_rich Low_complexity Low_complexity 1 22 0 598 116 0 0 chr12 126431699 126431785 -17354670 + AluJ/FRAM SINE Alu 217 302 -10 190 336 130 29 chr12 126431907 126432115 -17354340 + L2 LINE L2 2832 3060 -212 1756 110 61 0 chr12 126432167 126432431 -17354024 + AluSq SINE Alu 1 280 -33 639 145 24 40 chr12 126432435 126432559 -17353896 - MER103 DNA DNA -44 122 1 366 319 48 61 chr12 126432790 126433019 -17353436 - MIR SINE MIR -12 250 25 406 228 197 85 chr12 126433165 126433583 -17352872 + MLT1J LTR MaLR 108 615 0 423 283 58 40 chr12 126433849 126434022 -17352433 + MER5A DNA MER1_type 8 183 -6 473 100 0 12 chr12 126434757 126434774 -17351681 + (TC)n Simple_repeat Simple_repeat 2 18 -62 261 83 0 0 chr12 126434774 126434810 -17351645 + (CA)n Simple_repeat Simple_repeat 1 36 0 473 100 0 12 chr12 126434810 126434872 -17351583 + (TC)n Simple_repeat Simple_repeat 18 80 0 252 0 0 0 chr12 126436192 126436220 -17350235 + (T)n Simple_repeat Simple_repeat 1 28 0 410 200 0 21 chr12 126436365 126436460 -17349995 + AluSg/x SINE Alu 206 298 -2 937 267 74 50 chr12 126436481 126436726 -17349729 + L2 LINE L2 2863 3101 -212 1660 173 32 0 chr12 126436726 126437010 -17349445 - AluJb SINE Alu -19 293 1 1351 165 19 74 chr12 126437017 126437216 -17349239 - AluJo SINE Alu -20 292 114 378 0 0 0 chr12 126437216 126437258 -17349197 + (TAG)n Simple_repeat Simple_repeat 1 42 0 1351 165 19 74 chr12 126437258 126437367 -17349088 - AluJo SINE Alu -198 114 1 937 267 74 50 chr12 126437367 126437532 -17348923 + L2 LINE L2 3106 3291 -22 255 61 0 0 chr12 126438077 126438110 -17348345 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2071 95 3 35 chr12 126438359 126438675 -17347780 + AluSx SINE Alu 1 306 -6 420 323 52 0 chr12 126438692 126438847 -17347608 + L2 LINE L2 2871 3033 -239 1773 160 7 7 chr12 126439054 126439186 -17347269 + AluJo SINE Alu 1 132 -180 476 14 0 56 chr12 126439186 126439282 -17347173 + L1PA3 LINE L1 6089 6155 0 1773 160 7 7 chr12 126439282 126439449 -17347006 + AluJo SINE Alu 131 300 -12 554 202 144 49 chr12 126439862 126440105 -17346350 + L1MC5 LINE L1 7642 7907 -54 2191 91 0 10 chr12 126440113 126440420 -17346035 + AluSg SINE Alu 1 304 -6 831 130 0 8 chr12 126440432 126440555 -17345900 + AluSq SINE Alu 91 212 -101 2099 112 23 0 chr12 126440812 126441117 -17345338 + AluSx SINE Alu 1 312 0 435 176 82 123 chr12 126441484 126441578 -17344877 + MER102a DNA MER1_type 37 133 -208 1473 190 14 7 chr12 126441578 126441868 -17344587 + AluJo SINE Alu 3 294 -18 675 167 92 0 chr12 126441870 126441990 -17344465 + FLAM_C SINE Alu 1 131 -2 435 176 82 123 chr12 126441990 126442062 -17344393 + MER102a DNA MER1_type 134 199 -142 1820 98 0 82 chr12 126442515 126442830 -17343625 + AluSx SINE Alu 1 289 -23 2612 35 0 3 chr12 126442908 126443218 -17343237 + AluY SINE Alu 1 309 -2 249 284 0 37 chr12 126443239 126443320 -17343135 + MER102a DNA MER1_type 251 328 -2 429 248 16 24 chr12 126443408 126443533 -17342922 - MLT1L LTR MaLR -340 275 152 394 220 24 172 chr12 126443542 126443600 -17342855 - MER5B DNA MER1_type 0 178 113 2454 70 3 3 chr12 126443600 126443913 -17342542 + AluSp SINE Alu 1 313 0 394 220 24 172 chr12 126443913 126443928 -17342527 - MER5B DNA MER1_type -65 113 97 2059 100 0 7 chr12 126443928 126444218 -17342237 + AluSx SINE Alu 1 288 -24 207 0 0 0 chr12 126444227 126444250 -17342205 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 394 220 24 172 chr12 126444250 126444374 -17342081 - MER5B DNA MER1_type -90 88 1 373 256 23 83 chr12 126444374 126444480 -17341975 - MIR3 SINE MIR -44 164 67 712 211 0 0 chr12 126444531 126444659 -17341796 + FLAM_C SINE Alu 1 128 -5 1570 166 136 55 chr12 126444779 126444917 -17341538 + LTR54B LTR ERV1 3 128 -370 1707 151 3 50 chr12 126444917 126445236 -17341219 + AluSx SINE Alu 3 306 -6 1570 166 136 55 chr12 126445236 126445492 -17340963 + LTR54B LTR ERV1 128 441 -57 2215 101 0 3 chr12 126445492 126445799 -17340656 + AluSq SINE Alu 1 306 -7 1570 166 136 55 chr12 126445799 126445860 -17340595 + LTR54B LTR ERV1 441 496 -2 1525 165 0 28 chr12 126445895 126446150 -17340305 + AluJb SINE Alu 1 248 -64 219 69 0 0 chr12 126446452 126446481 -17339974 + (CTG)n Simple_repeat Simple_repeat 3 31 0 27 62 0 0 chr12 126446632 126446680 -17339775 + GC_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr12 126447126 126447146 -17339309 + (TG)n Simple_repeat Simple_repeat 2 21 0 208 210 32 0 chr12 126447151 126447213 -17339242 + (TTTG)n Simple_repeat Simple_repeat 4 67 0 804 123 14 29 chr12 126447471 126447609 -17338846 + AluJo SINE Alu 1 136 -176 1186 188 68 0 chr12 126447621 126447855 -17338600 + MER58B DNA MER1_type 92 341 0 273 302 62 31 chr12 126447862 126447991 -17338464 + L2 LINE L2 2935 3067 -246 1285 39 0 7 chr12 126448192 126448345 -17338110 - L1PA10 LINE L1 -8 6160 6009 2145 111 27 3 chr12 126448379 126448677 -17337778 + AluSq SINE Alu 1 305 -8 539 291 83 28 chr12 126448823 126449150 -17337305 - L1MCc LINE L1 -4899 1524 1180 576 255 99 25 chr12 126449847 126450204 -17336251 + LTR67 LTR ERVL 38 462 -95 1350 151 54 125 chr12 126450231 126450283 -17336172 - MLT1B LTR MaLR -16 374 320 2236 103 3 32 chr12 126450283 126450593 -17335862 + AluSg SINE Alu 2 302 -8 1350 151 54 125 chr12 126450593 126450932 -17335523 - MLT1B LTR MaLR -70 320 11 289 155 84 127 chr12 126450938 126451009 -17335446 + LTR67 LTR ERVL 455 556 -1 659 257 122 23 chr12 126451025 126451239 -17335216 + MER102a DNA MER1_type 96 330 0 1965 137 3 52 chr12 126452194 126452522 -17333933 - AluSx SINE Alu 0 312 1 2145 114 21 37 chr12 126452662 126453038 -17333417 - L1MA4 LINE L1 -2 6298 5929 1983 152 0 34 chr12 126453058 126453380 -17333075 - AluJb SINE Alu -1 311 1 395 331 80 28 chr12 126453386 126453748 -17332707 + L1ME4a LINE L1 5649 6029 -92 1215 1112 717 73 chr12 126454073 126454302 -17332153 + L1MB5 LINE L1 5644 5725 -441 2044 92 9 155 chr12 126454302 126454675 -17331780 + THE1B LTR MaLR 1 306 -58 2433 74 3 0 chr12 126454675 126454973 -17331482 + AluSp SINE Alu 1 299 -14 2044 92 9 155 chr12 126454973 126455025 -17331430 + THE1B LTR MaLR 306 364 0 1215 1112 717 73 chr12 126455025 126455066 -17331389 + L1MB5 LINE L1 5725 5939 -227 1648 184 0 10 chr12 126455155 126455454 -17331001 + AluJo SINE Alu 1 296 -16 4539 222 96 77 chr12 126455483 126455976 -17330479 + L1M4 LINE L1 2315 2797 -3349 1982 129 17 14 chr12 126455976 126456287 -17330168 + AluSx SINE Alu 1 312 0 4539 222 96 77 chr12 126456287 126457467 -17328988 + L1M4 LINE L1 2797 3954 -2192 2042 124 3 14 chr12 126457467 126457750 -17328705 + AluSx SINE Alu 1 280 -32 690 0 0 32 chr12 126457751 126457844 -17328611 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 4539 222 96 77 chr12 126457844 126458694 -17327761 + L1M4 LINE L1 3953 4725 -1421 659 114 0 0 chr12 126458752 126458840 -17327615 + AluS SINE Alu 2 89 -223 1968 80 0 8 chr12 126458841 126459090 -17327365 + AluSx SINE Alu 52 298 -14 774 245 24 36 chr12 126459090 126459339 -17327116 + L1M4 LINE L1 4740 4985 -1161 374 37 0 37 chr12 126459342 126459396 -17327059 - MADE1 DNA Mariner 0 80 29 2311 101 0 0 chr12 126459396 126459693 -17326762 + AluSq SINE Alu 1 297 -16 1129 211 129 16 chr12 126459869 126460125 -17326330 - AluJo SINE Alu -16 286 2 1748 201 68 14 chr12 126460127 126460283 -17326172 + MER82 DNA MER2_type 19 165 -488 274 0 73 0 chr12 126460283 126460324 -17326131 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 1748 201 68 14 chr12 126460324 126460711 -17325744 + MER82 DNA MER2_type 165 652 -1 203 219 16 31 chr12 126460713 126460777 -17325678 + L2 LINE L2 3171 3233 -80 641 302 78 4 chr12 126461766 126461998 -17324457 - MIR SINE MIR 0 262 14 497 198 0 0 chr12 126462015 126462106 -17324349 + FLAM SINE Alu 40 130 -13 585 274 11 17 chr12 126462305 126462480 -17323975 - MIR SINE MIR -45 217 44 504 306 19 0 chr12 126462843 126463000 -17323455 + MIR SINE MIR 90 249 -13 1760 187 0 3 chr12 126463138 126463422 -17323033 + AluJb SINE Alu 8 290 -22 342 207 49 0 chr12 126463460 126463542 -17322913 - L1M4 LINE L1 -3626 2520 2435 1137 279 100 5 chr12 126463582 126463951 -17322504 - MLT1I LTR MaLR 0 409 6 390 262 19 9 chr12 126463951 126464058 -17322397 - L1MC/D LINE L1 -2021 5787 5680 1516 147 0 105 chr12 126464365 126464705 -17321750 - AluJo SINE Alu 0 310 4 2287 73 3 16 chr12 126464726 126465029 -17321426 - AluSp SINE Alu -14 299 1 453 294 38 19 chr12 126465481 126465676 -17320779 - Charlie8 DNA MER1_type -2195 222 72 280 174 0 0 chr12 126465853 126465899 -17320556 + FLAM SINE Alu 63 108 -25 1571 166 57 28 chr12 126465994 126466277 -17320178 - AluJo SINE Alu -21 291 1 1190 169 5 27 chr12 126466352 126466571 -17319884 + MER20 DNA MER1_type 4 217 -2 2351 109 0 0 chr12 126467099 126467410 -17319045 + AluSx SINE Alu 1 311 -1 348 246 0 0 chr12 126467681 126467746 -17318709 - AluJo SINE Alu -129 173 109 1086 162 95 34 chr12 126468074 126468390 -17318065 + MLT1A1 LTR MaLR 1 374 -16 370 354 6 0 chr12 126468549 126468707 -17317748 + AluJb SINE Alu 140 298 -4 447 248 25 37 chr12 126468768 126468929 -17317526 - MER5A DNA MER1_type -7 182 24 * 454 278 153 19 chr12 126468927 126469136 -17317319 + MIR SINE MIR 23 259 -3 395 250 43 50 chr12 126469139 126469279 -17317176 - L2 LINE L2 0 3313 3175 204 296 28 0 chr12 126469623 126469694 -17316761 - MIR SINE MIR -39 223 151 2081 131 58 14 chr12 126470150 126470509 -17315946 - THE1C LTR MaLR 0 375 1 805 236 0 6 chr12 126470704 126470886 -17315569 + AluJb SINE Alu 122 302 -10 2321 78 20 0 chr12 126471497 126471791 -17314664 + AluSx SINE Alu 1 300 -12 381 329 65 0 chr12 126473154 126473324 -17313131 - MIR SINE MIR -74 188 8 876 173 6 6 chr12 126473488 126473644 -17312811 - FRAM SINE Alu -17 159 4 2208 158 16 29 chr12 126473650 126474083 -17312372 - L1MB5 LINE L1 -37 6137 5719 984 206 32 28 chr12 126474140 126474358 -17312097 - MER20 DNA MER1_type 0 219 1 1149 133 0 44 chr12 126474423 126474604 -17311851 - AluSx SINE Alu -19 293 121 833 131 0 33 chr12 126474691 126474813 -17311642 - AluSx SINE Alu -194 118 1 323 208 28 0 chr12 126475188 126475260 -17311195 + L2 LINE L2 3233 3306 -7 659 216 182 25 chr12 126475869 126476282 -17310173 + LTR33 LTR ERVL 22 521 0 21 0 0 0 chr12 126476562 126476583 -17309872 + AT_rich Low_complexity Low_complexity 1 21 0 1977 142 0 3 chr12 126477015 126477311 -17309144 - AluJb SINE Alu -4 308 14 228 111 0 0 chr12 126477443 126477479 -17308976 + (A)n Simple_repeat Simple_repeat 1 36 0 536 246 0 0 chr12 126477487 126477601 -17308854 + AluSq/x SINE Alu 2 115 -198 189 74 0 0 chr12 126477763 126477790 -17308665 + (A)n Simple_repeat Simple_repeat 1 27 0 244 287 190 29 chr12 126477921 126478095 -17308360 + MIR SINE MIR 49 250 -12 2845 197 72 35 chr12 126478379 126478946 -17307509 + L1MB3 LINE L1 5369 5913 -270 2031 99 81 7 chr12 126478946 126479230 -17307225 + AluSx SINE Alu 1 305 -7 2845 197 72 35 chr12 126479230 126479351 -17307104 + L1MB3 LINE L1 5913 6028 -155 2310 124 31 80 chr12 126479351 126479801 -17306654 + MSTA LTR MaLR 1 428 0 2845 197 72 35 chr12 126479801 126479831 -17306624 + L1MB3 LINE L1 6028 6055 -128 198 0 0 0 chr12 126479831 126479853 -17306602 + (CA)n Simple_repeat Simple_repeat 1 22 0 2845 197 72 35 chr12 126479853 126480047 -17306408 + L1MB3 LINE L1 6055 6102 -81 1634 160 9 72 chr12 126480047 126480378 -17306077 - AluSx SINE Alu 0 312 3 1886 94 54 33 chr12 126480382 126480688 -17305767 - AluSx SINE Alu 0 312 1 1083 146 22 6 chr12 126481686 126481864 -17304591 + AluSg/x SINE Alu 117 297 -13 21 0 0 0 chr12 126481886 126481907 -17304548 + AT_rich Low_complexity Low_complexity 1 21 0 3091 134 11 0 chr12 126481907 126482383 -17304072 - L1PA16 LINE L1 -9 6157 5677 808 96 0 0 chr12 126482383 126482487 -17303968 - AluSq/x SINE Alu -205 108 5 1421 118 19 0 chr12 126482495 126482734 -17303721 - L1PA16 LINE L1 -684 5482 5240 2294 104 10 0 chr12 126482762 126483069 -17303386 + AluSq SINE Alu 1 310 -3 2055 119 3 14 chr12 126483070 126483364 -17303091 + AluSx SINE Alu 1 291 -21 579 267 75 13 chr12 126483966 126484179 -17302276 + MIR SINE MIR 25 245 -17 23 0 0 0 chr12 126484217 126484240 -17302215 + AT_rich Low_complexity Low_complexity 1 23 0 2215 117 0 13 chr12 126484247 126484556 -17301899 + AluSx SINE Alu 1 305 -7 2009 147 3 3 chr12 126484568 126484868 -17301587 + AluSx SINE Alu 1 300 -12 3219 142 24 42 chr12 126484986 126485332 -17301123 - L1MB3 LINE L1 -8 6175 5843 2101 133 0 13 chr12 126485332 126485641 -17300814 - AluJb SINE Alu -7 305 1 3219 142 24 42 chr12 126485641 126485908 -17300547 - L1MB3 LINE L1 -340 5843 5573 214 212 165 12 chr12 126485914 126485999 -17300456 - MIR SINE MIR -6 256 159 2402 172 17 40 chr12 126486335 126486379 -17300076 + L1MB4 LINE L1 5669 5712 -468 2064 126 75 29 chr12 126486379 126486727 -17299728 + THE1B LTR MaLR 1 364 0 2402 172 17 40 chr12 126486727 126487206 -17299249 + L1MB4 LINE L1 5712 6180 0 1733 152 42 3 chr12 126487208 126487491 -17298964 - AluSx SINE Alu -18 294 1 303 314 0 10 chr12 126487604 126487706 -17298749 - MER5A DNA MER1_type -86 103 3 2041 128 7 0 chr12 126487791 126488104 -17298351 + AluSx SINE Alu 1 315 0 307 300 150 7 chr12 126488974 126489114 -17297341 - MIR SINE MIR -17 245 86 2188 128 0 0 chr12 126489162 126489451 -17297004 + AluSq SINE Alu 1 289 -24 1929 153 0 20 chr12 126489591 126489886 -17296569 + AluJb SINE Alu 1 289 -23 2312 113 0 0 chr12 126489888 126490198 -17296257 + AluSx SINE Alu 1 310 -2 530 147 78 23 chr12 126490337 126490466 -17295989 + MER53 DNA DNA 4 139 -50 1348 88 0 6 chr12 126490466 126490637 -17295818 + AluY SINE Alu 1 170 -141 625 162 9 0 chr12 126490739 126490844 -17295611 + MSTA LTR MaLR 321 426 -2 1590 161 11 31 chr12 126490846 126491132 -17295323 + AluJo SINE Alu 3 282 -30 323 222 12 25 chr12 126491154 126491235 -17295220 + MER96B DNA MER1_type? 338 417 0 240 115 49 49 chr12 126491284 126491345 -17295110 - MER5B DNA MER1_type 0 178 118 3750 158 29 28 chr12 126491435 126491674 -17294781 + L1MB7 LINE L1 5447 5684 -500 1929 146 7 7 chr12 126491674 126491962 -17294493 + AluSq SINE Alu 1 288 -25 3750 158 29 28 chr12 126491962 126492358 -17294097 + L1MB7 LINE L1 5684 6086 -98 2286 110 0 0 chr12 126492358 126492659 -17293796 - AluSq SINE Alu -12 301 1 3750 158 29 28 chr12 126492659 126492738 -17293717 + L1MB7 LINE L1 6086 6163 -21 256 93 0 47 chr12 126492739 126492782 -17293673 - MER5B DNA MER1_type -124 54 14 2069 115 41 10 chr12 126494225 126494520 -17291935 - AluSx SINE Alu -8 304 1 252 98 73 0 chr12 126494538 126494579 -17291876 - L1MA1 LINE L1 -4 6298 6255 * 1532 75 14 9 chr12 126494578 126494791 -17291664 + L1MA1 LINE L1 5744 5957 -345 1989 142 17 7 chr12 126495112 126495414 -17291041 + AluJo SINE Alu 1 305 -7 2470 202 40 48 chr12 126495499 126496097 -17290358 + MLT1E LTR MaLR 1 593 0 236 290 0 0 chr12 126496406 126496468 -17289987 - MIR SINE MIR -5 257 196 330 121 133 24 chr12 126497027 126497110 -17289345 + MER96B DNA MER1_type? 1 92 -325 2134 145 3 3 chr12 126497192 126497503 -17288952 - AluSx SINE Alu -1 311 1 1494 131 5 5 chr12 126498077 126498299 -17288156 + AluSx SINE Alu 1 222 -90 903 116 0 0 chr12 126498299 126498420 -17288035 + AluSg/x SINE Alu 185 305 -7 1115 82 32 0 chr12 126498492 126498650 -17287805 + L1PA7 LINE L1 5989 6151 -3 674 272 112 5 chr12 126498744 126498968 -17287487 + MIR SINE MIR 9 256 -6 894 185 16 16 chr12 126499260 126499449 -17287006 + MER53 DNA DNA 1 189 0 1697 180 25 0 chr12 126499623 126499901 -17286554 + AluJo SINE Alu 1 285 -27 180 0 0 0 chr12 126499901 126499921 -17286534 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 529 347 0 10 chr12 126500465 126500664 -17285791 - MIR SINE MIR -16 246 50 2339 91 0 0 chr12 126500801 126501087 -17285368 + AluSx SINE Alu 1 286 -26 186 118 0 0 chr12 126501087 126501121 -17285334 + (CATAA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 126501858 126501878 -17284577 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 311 222 28 0 chr12 126501879 126501951 -17284504 - L2 LINE L2 -13 3300 3227 2290 104 3 10 chr12 126501970 126502278 -17284177 + AluSq SINE Alu 1 306 -7 1744 111 13 0 chr12 126502286 126502520 -17283935 + AluSq SINE Alu 59 295 -18 425 182 304 27 chr12 126502601 126502665 -17283790 - MER5A DNA MER1_type 0 189 144 1582 115 112 8 chr12 126502665 126502925 -17283530 + AluJb SINE Alu 1 287 -25 425 182 304 27 chr12 126502925 126503008 -17283447 - MER5A DNA MER1_type -45 144 1 348 310 0 18 chr12 126503022 126503141 -17283314 - MIR SINE MIR -58 150 37 281 59 0 0 chr12 126504645 126504679 -17281776 + MADE1 DNA Mariner 47 80 0 245 276 58 23 chr12 126504811 126504898 -17281557 - MIR3 SINE MIR -12 196 107 404 269 27 27 chr12 126505373 126505522 -17280933 - MER113 DNA MER1_type? -3 518 370 2080 133 0 17 chr12 126505524 126505825 -17280630 + AluSx SINE Alu 5 300 -12 1920 153 3 13 chr12 126505850 126506151 -17280304 + AluJb SINE Alu 6 303 -9 359 222 0 25 chr12 126506161 126506242 -17280213 - MER113 DNA MER1_type? -152 369 291 2262 94 3 0 chr12 126556530 126556829 -17229626 - AluSq SINE Alu -13 300 1 255 352 70 30 chr12 126556864 126557063 -17229392 + MIR SINE MIR 35 241 -21 234 266 137 32 chr12 126557318 126557442 -17229013 - MIR SINE MIR -44 218 82 217 294 0 0 chr12 126557490 126557541 -17228914 - MER5A DNA MER1_type 0 189 139 522 171 0 0 chr12 126558067 126558149 -17228306 + L2 LINE L2 3232 3313 0 2171 88 0 0 chr12 126558372 126558655 -17227800 + AluSq SINE Alu 5 287 -26 1157 188 0 0 chr12 126558779 126558981 -17227474 + AluSg/x SINE Alu 89 290 -20 710 193 82 47 chr12 126558983 126559216 -17227239 - L1ME2 LINE L1 -249 5915 5675 787 158 110 6 chr12 126559241 126559405 -17227050 + L1MB3 LINE L1 5801 5981 -202 2135 108 3 13 chr12 126559415 126559729 -17226726 - AluSx SINE Alu 0 312 2 1807 130 0 0 chr12 126559757 126560010 -17226445 - AluSx SINE Alu -55 257 5 571 213 22 71 chr12 126560013 126560065 -17226390 - L1MB2 LINE L1 -40 6131 6078 1754 154 0 37 chr12 126560065 126560389 -17226066 - AluJb SINE Alu 0 312 1 571 213 22 71 chr12 126560389 126560519 -17225936 - L1MB2 LINE L1 -93 6078 5958 778 209 62 139 chr12 126561134 126561507 -17224948 + MLT1J LTR MaLR 113 456 -55 778 214 105 14 chr12 126561718 126561745 -17224710 + L1MC4a LINE L1 5611 5634 -2174 2131 118 0 3 chr12 126561745 126562050 -17224405 - AluSc SINE Alu -5 304 1 778 214 105 14 chr12 126562050 126562232 -17224223 + L1MC4a LINE L1 5634 5839 -1969 2178 91 0 7 chr12 126562858 126563155 -17223300 + AluSq SINE Alu 3 297 -16 2056 103 7 3 chr12 126563791 126564091 -17222364 - AluSq SINE Alu -12 301 1 1960 121 3 0 chr12 126564093 126564383 -17222072 - AluY SINE Alu -19 292 2 1807 130 0 0 chr12 126564411 126564664 -17221791 - AluSx SINE Alu -55 257 5 2828 33 24 0 chr12 126564805 126565138 -17221317 - LTR5 LTR ERVK -628 341 1 250 77 6 3 chr12 126565138 126565311 -17221144 + AluY SINE Alu 92 307 -1 2315 84 3 0 chr12 126565344 126565654 -17220801 - AluSq SINE Alu -2 311 1 729 228 40 0 chr12 126566643 126566792 -17219663 + MIR SINE MIR 106 260 -2 2006 117 0 27 chr12 126566792 126566950 -17219505 - AluSx SINE Alu -21 291 143 2278 71 10 3 chr12 126566950 126567244 -17219211 - AluSx SINE Alu -12 300 5 2006 117 0 27 chr12 126567244 126567384 -17219071 - AluSx SINE Alu -169 143 1 1953 178 0 6 chr12 126567405 126567726 -17218729 + MLT1A1 LTR MaLR 1 319 -46 957 211 0 0 chr12 126567744 126567919 -17218536 + AluJo SINE Alu 121 295 -17 2087 117 0 9 chr12 126567993 126568309 -17218146 + AluSq SINE Alu 1 313 0 1468 175 64 7 chr12 126568451 126568731 -17217724 - AluJo SINE Alu -15 297 2 2064 113 0 7 chr12 126568825 126569125 -17217330 - AluSx SINE Alu -6 306 9 835 161 37 0 chr12 126569134 126569296 -17217159 - L1MB7 LINE L1 -8 6176 6009 1184 169 97 30 chr12 126569298 126569616 -17216839 + MSTD LTR MaLR 1 396 0 1236 178 22 4 chr12 126569616 126569841 -17216614 - L1MB7 LINE L1 -173 6011 5783 2249 161 40 12 chr12 126569841 126569984 -17216471 - MER50 LTR ERV1 -23 711 574 2255 71 24 0 chr12 126569984 126570278 -17216177 + AluSp SINE Alu 1 301 -12 2249 161 40 12 chr12 126570278 126570775 -17215680 - MER50 LTR ERV1 -160 574 1 239 143 0 0 chr12 126570775 126570817 -17215638 - L1MB7 LINE L1 -397 5787 5746 934 147 0 0 chr12 126571000 126571150 -17215305 + AluJb SINE Alu 154 303 -9 2017 142 0 0 chr12 126571172 126571483 -17214972 - AluSx SINE Alu -1 311 1 1126 99 0 0 chr12 126571699 126571851 -17214604 + MER41E LTR ERV1 8 159 -353 2186 101 0 0 chr12 126571853 126572151 -17214304 + AluSx SINE Alu 5 302 -10 1232 137 37 0 chr12 126572151 126572341 -17214114 + MER41E LTR ERV1 284 480 -32 1963 149 29 107 chr12 126572360 126572778 -17213677 + LTR8 LTR ERV1 246 622 -69 2335 96 0 0 chr12 126572778 126573090 -17213365 - AluSq SINE Alu -1 312 1 1963 149 29 107 chr12 126573090 126573155 -17213300 + LTR8 LTR ERV1 622 691 0 332 191 0 48 chr12 126573158 126573221 -17213234 - MIR SINE MIR -64 144 85 2503 37 0 3 chr12 126573280 126573579 -17212876 - AluY SINE Alu -12 299 2 2157 82 0 0 chr12 126573582 126573861 -17212594 - AluSx SINE Alu -16 296 18 1144 151 21 0 chr12 126573931 126574123 -17212332 + AluJo SINE Alu 87 282 -30 2364 134 14 62 chr12 126574123 126574489 -17211966 - MER84 LTR ERVI 0 507 164 2160 105 20 0 chr12 126574489 126574794 -17211661 + AluSx SINE Alu 1 311 -1 2364 134 14 62 chr12 126574794 126574859 -17211596 - MER84 LTR ERVI -343 164 97 24 0 0 0 chr12 126574859 126574883 -17211572 + AT_rich Low_complexity Low_complexity 1 24 0 2004 169 154 18 chr12 126574887 126575401 -17211054 - LTR29 LTR ERV1 -38 584 1 290 277 35 41 chr12 126575600 126575722 -17210733 - MIR3 SINE MIR -32 176 50 25 31 0 0 chr12 126576126 126576158 -17210297 + AT_rich Low_complexity Low_complexity 1 32 0 519 100 100 0 chr12 126576158 126576248 -17210207 + L1P4 LINE L1 5343 5441 -725 683 170 0 0 chr12 126576254 126576366 -17210089 + AluJo/FLAM SINE Alu 13 124 -188 1828 132 4 0 chr12 126576366 126576632 -17209823 - AluSg SINE Alu -43 267 1 865 256 81 15 chr12 126576633 126576906 -17209549 + L1MC4a LINE L1 5639 5929 -1879 1628 174 20 0 chr12 126577028 126577321 -17209134 - AluSx SINE Alu -13 299 1 612 171 0 18 chr12 126577463 126577574 -17208881 - FLAM_C SINE Alu -33 110 2 230 156 0 0 chr12 126577599 126577644 -17208811 - LTR66 LTR ERVL -172 438 394 2173 94 3 0 chr12 126577667 126577966 -17208489 - AluSp SINE Alu -13 300 1 304 169 17 17 chr12 126577968 126578027 -17208428 - AluY SINE Alu -115 186 128 1920 146 7 0 chr12 126578030 126578331 -17208124 - AluSx SINE Alu -9 303 1 1928 103 0 86 chr12 126578803 126579142 -17207313 - AluSg SINE Alu 0 310 1 1074 68 0 0 chr12 126579146 126579278 -17207177 - AluSp SINE Alu -181 132 1 524 224 9 26 chr12 126579278 126579394 -17207061 - MLT1E LTR MaLR -64 529 416 328 253 13 13 chr12 126579394 126579469 -17206986 - MER76 LTR ERV 0 688 614 1690 144 0 78 chr12 126579485 126579804 -17206651 + AluJb SINE Alu 14 307 -5 1751 216 13 18 chr12 126579866 126580250 -17206205 - MER76 LTR ERV -306 382 1 915 191 93 172 chr12 126580250 126580493 -17205962 - MLT1E LTR MaLR -179 414 152 2372 32 0 0 chr12 126580493 126580810 -17205645 - AluY SINE Alu 0 317 1 915 191 93 172 chr12 126580810 126580865 -17205590 - MLT1E LTR MaLR -441 152 94 1695 164 7 3 chr12 126580865 126581152 -17205303 - AluJo SINE Alu -24 288 1 915 191 93 172 chr12 126581152 126581300 -17205155 - MLT1E LTR MaLR -499 94 3 387 286 84 45 chr12 126581317 126581468 -17204987 + MLT1K LTR MaLR 358 520 -68 2043 119 7 0 chr12 126581468 126581787 -17204668 - AluSq SINE Alu 0 321 1 387 286 84 45 chr12 126581787 126581811 -17204644 + MLT1K LTR MaLR 520 542 -46 551 143 12 0 chr12 126581812 126581896 -17204559 + AluJ/FLAM SINE Alu 3 87 -225 1109 132 0 23 chr12 126581912 126582086 -17204369 - AluJo SINE Alu -142 170 1 6941 43 39 0 chr12 126582209 126583741 -17202714 + L1PA6 LINE L1 4584 6154 0 1045 166 57 5 chr12 126583752 126583963 -17202492 + L1ME LINE L1 5548 5769 -397 2309 91 3 0 chr12 126583985 126584292 -17202163 + AluSp SINE Alu 1 308 -5 2156 98 0 0 chr12 126584520 126584815 -17201640 - AluSx SINE Alu -17 295 1 2507 46 0 3 chr12 126584965 126585269 -17201186 - AluY SINE Alu -6 305 3 2149 109 0 3 chr12 126585534 126585836 -17200619 - AluSx SINE Alu -5 307 7 2981 216 28 43 chr12 126585842 126586707 -17199748 - L1P LINE L1 -1159 4987 4136 1092 129 21 26 chr12 126587193 126587386 -17199069 + AluSg/x SINE Alu 113 304 -8 694 346 107 20 chr12 126588473 126589140 -17197315 + L2 LINE L2 2542 3272 0 306 290 8 81 chr12 126589620 126589744 -17196711 + L2 LINE L2 3153 3267 -5 218 355 100 9 chr12 126590003 126590113 -17196342 - L2 LINE L2 -51 3221 3102 374 311 107 66 chr12 126590248 126590381 -17196074 - L2 LINE L2 -493 2821 2695 2042 113 0 0 chr12 126590381 126590656 -17195799 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr12 126590661 126590685 -17195770 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 374 311 107 66 chr12 126590685 126590956 -17195499 - L2 LINE L2 -622 2692 2394 1895 154 0 3 chr12 126591265 126591558 -17194897 - AluSx SINE Alu -20 292 1 848 162 87 65 chr12 126591651 126591880 -17194575 + MER106A DNA MER1_type 1 234 -2 2226 69 0 3 chr12 126592018 126592309 -17194146 + AluY SINE Alu 1 290 -21 1899 123 28 0 chr12 126592428 126592712 -17193743 + AluSx SINE Alu 1 292 -20 2333 91 0 0 chr12 126592729 126593037 -17193418 + AluSq SINE Alu 5 312 -1 252 0 0 0 chr12 126593037 126593065 -17193390 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 395 230 84 117 chr12 126593428 126593508 -17192947 - L1ME4a LINE L1 -4 6117 6036 1422 160 12 68 chr12 126593508 126593845 -17192610 - L1MA9 LINE L1 0 6312 5995 395 230 84 117 chr12 126593845 126593977 -17192478 - L1ME4a LINE L1 -85 6036 5912 444 118 11 43 chr12 126593981 126594074 -17192381 - LTR67 LTR ERVL 0 557 468 701 312 70 20 chr12 126594452 126594808 -17191647 - L1MC4a LINE L1 -1966 5842 5469 294 29 0 0 chr12 126595151 126595186 -17191269 + (TG)n Simple_repeat Simple_repeat 1 35 0 462 146 68 48 chr12 126595297 126595400 -17191055 + MSTC LTR MaLR 324 428 0 1236 178 22 4 chr12 126595400 126595625 -17190830 - L1MB7 LINE L1 -173 6011 5783 2249 161 40 12 chr12 126595625 126595768 -17190687 - MER50 LTR ERV1 -23 711 574 2255 71 24 0 chr12 126595768 126596062 -17190393 + AluSp SINE Alu 1 301 -12 2249 161 40 12 chr12 126596062 126596559 -17189896 - MER50 LTR ERV1 -160 574 1 239 143 0 0 chr12 126596559 126596601 -17189854 - L1MB7 LINE L1 -397 5787 5746 934 147 0 0 chr12 126596784 126596934 -17189521 + AluJb SINE Alu 154 303 -9 1780 143 16 3 chr12 126596956 126597263 -17189192 - AluSx SINE Alu -1 311 1 1126 99 0 0 chr12 126597479 126597631 -17188824 + MER41E LTR ERV1 8 159 -353 2186 101 0 0 chr12 126597633 126597931 -17188524 + AluSx SINE Alu 5 302 -10 1232 137 37 0 chr12 126597931 126598121 -17188334 + MER41E LTR ERV1 284 480 -32 1588 156 34 106 chr12 126598140 126598557 -17187898 + LTR8 LTR ERV1 246 632 -59 2439 90 0 3 chr12 126598558 126598868 -17187587 - AluSg SINE Alu -1 309 1 23 0 0 0 chr12 126598954 126598977 -17187478 + AT_rich Low_complexity Low_complexity 1 23 0 * 754 151 0 41 chr12 126598955 126599123 -17187332 - AluSg/x SINE Alu 0 332 171 1813 152 7 0 chr12 126599003 126599293 -17187162 - AluSx SINE Alu -20 292 1 1489 165 62 4 chr12 126599376 126599649 -17186806 - AluJb SINE Alu -23 289 1 313 109 18 0 chr12 126599761 126599816 -17186639 + Alu SINE Alu 1 56 -243 212 171 73 85 chr12 126599965 126600047 -17186408 + MER5C DNA MER1_type 239 319 -5 477 290 41 0 chr12 126600362 126600507 -17185948 - MIR SINE MIR -110 152 2 2294 100 7 0 chr12 126600995 126601295 -17185160 - AluSg SINE Alu -8 302 1 212 242 32 65 chr12 126601463 126601525 -17184930 - L2 LINE L2 -7 3265 3206 2323 101 0 0 chr12 126601784 126602080 -17184375 + AluSx SINE Alu 1 296 -16 186 301 55 68 chr12 126602218 126602364 -17184091 + L2 LINE L2 3159 3302 -11 222 281 118 52 chr12 126602774 126602927 -17183528 + L2 LINE L2 2703 2865 -449 488 343 42 81 chr12 126602963 126603322 -17183133 + L2 LINE L2 2928 3272 0 1012 104 0 15 chr12 126603645 126603780 -17182675 + FLAM_C SINE Alu 1 133 0 1585 152 0 40 chr12 126604050 126604326 -17182129 - AluJo SINE Alu -8 304 40 2247 120 0 0 chr12 126604326 126604626 -17181829 - AluSx SINE Alu -12 300 1 27 73 0 0 chr12 126606031 126606086 -17180369 + AT_rich Low_complexity Low_complexity 1 55 0 2070 149 0 0 chr12 126606091 126606387 -17180068 + AluSx SINE Alu 1 296 -16 243 188 0 0 chr12 126606387 126606435 -17180020 + (TATG)n Simple_repeat Simple_repeat 2 49 0 485 190 216 0 chr12 126606730 126606846 -17179609 - MER3 DNA MER1_type -68 141 1 738 133 49 56 chr12 126607164 126607307 -17179148 + AluSg/x SINE Alu 168 309 -1 180 111 0 0 chr12 126607593 126607620 -17178835 + (T)n Simple_repeat Simple_repeat 1 27 0 237 243 0 0 chr12 126608018 126608088 -17178367 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 2037 114 11 4 chr12 126608088 126608393 -17178062 - AluSq SINE Alu 0 307 1 2265 99 7 0 chr12 126608860 126609164 -17177291 - AluSq SINE Alu -7 306 1 2110 117 3 3 chr12 126609166 126609457 -17176998 - AluSg SINE Alu -19 291 1 1654 153 17 36 chr12 126609800 126610101 -17176354 + AluJo SINE Alu 1 295 -17 223 170 94 0 chr12 126610102 126610155 -17176300 - MER5A DNA MER1_type -34 155 98 22 0 0 0 chr12 126610155 126610177 -17176278 + AT_rich Low_complexity Low_complexity 1 22 0 457 275 0 0 chr12 126610223 126610314 -17176141 - MER5A DNA MER1_type -98 91 1 471 303 52 106 chr12 126610326 126610935 -17175520 + L2 LINE L2 2647 3222 -50 876 126 7 7 chr12 126611221 126611356 -17175099 - AluSp/q SINE Alu -9 304 170 383 354 39 11 chr12 126611504 126611685 -17174770 - MIR SINE MIR -74 188 3 296 307 13 0 chr12 126612295 126612370 -17174085 - L2 LINE L2 0 3272 3197 22 0 0 0 chr12 126612481 126612503 -17173952 + AT_rich Low_complexity Low_complexity 1 22 0 782 209 66 137 chr12 126612710 126613103 -17173352 + MLT1J LTR MaLR 92 456 -55 2197 88 0 13 chr12 126613344 126613651 -17172804 - AluSx SINE Alu -9 303 1 1220 147 5 0 chr12 126613893 126614083 -17172372 - MER4E LTR ERV1 -5 761 571 975 151 7 0 chr12 126614083 126614235 -17172220 + AluJb SINE Alu 1 153 -159 192 40 0 0 chr12 126614389 126614414 -17172041 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 224 186 72 144 chr12 126614419 126614472 -17171983 + MER5A DNA MER1_type 100 144 -45 2384 92 0 0 chr12 126614472 126614766 -17171689 - AluSq SINE Alu -17 296 3 224 186 72 144 chr12 126614766 126614809 -17171646 + MER5A DNA MER1_type 144 189 0 2323 110 3 0 chr12 126615243 126615553 -17170902 + AluSq SINE Alu 1 311 -2 1581 152 17 40 chr12 126615657 126615953 -17170502 - AluJo SINE Alu -21 291 3 1607 115 34 22 chr12 126616143 126616412 -17170043 - AluSq SINE Alu -41 272 1 670 171 98 16 chr12 126616483 126616606 -17169849 + AluJo/FLAM SINE Alu 1 133 -169 2212 132 0 0 chr12 126616608 126616941 -17169514 + AluSg SINE Alu 1 333 0 968 218 81 19 chr12 126617704 126618011 -17168444 - L1MA9 LINE L1 -184 6128 5803 218 83 21 42 chr12 126618013 126618061 -17168394 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2132 183 12 12 chr12 126618103 126618512 -17167943 - L1MA9 LINE L1 -524 5788 5380 2207 112 0 0 chr12 126618660 126618947 -17167508 - AluSx SINE Alu -20 292 6 2199 112 3 10 chr12 126619296 126619599 -17166856 + AluSx SINE Alu 1 301 -11 704 304 124 31 chr12 126619649 126620195 -17166260 - L2 LINE L2 -928 2386 1790 340 310 0 0 chr12 126620211 126620298 -17166157 + L2 LINE L2 3181 3267 -5 1887 140 35 7 chr12 126620306 126620592 -17165863 + AluJo SINE Alu 1 294 -18 418 333 6 25 chr12 126620710 126620872 -17165583 - MIR SINE MIR -14 248 90 744 213 43 6 chr12 126620873 126621037 -17165418 - MER58B DNA MER1_type 0 341 172 2044 118 11 0 chr12 126621037 126621341 -17165114 + AluSx SINE Alu 1 307 0 829 149 16 0 chr12 126621638 126621759 -17164696 - FRAM SINE Alu -34 142 20 219 191 106 0 chr12 126621856 126621903 -17164552 + L2 LINE L2 3027 3078 -194 1493 161 16 69 chr12 126621974 126622279 -17164176 - AluJo SINE Alu -23 289 1 249 222 0 0 chr12 126622297 126622360 -17164095 + CT-rich Low_complexity Low_complexity 3 65 0 1134 200 0 10 chr12 126622368 126622573 -17163882 - AluJo SINE Alu -109 203 1 472 315 69 0 chr12 126622587 126622717 -17163738 + L2 LINE L2 3134 3272 0 1102 229 38 0 chr12 126623347 126623557 -17162898 + MER58A DNA MER1_type 1 218 -6 2198 110 0 31 chr12 126623579 126623898 -17162557 - AluSx SINE Alu -2 310 2 2298 52 41 10 chr12 126624000 126624290 -17162165 - AluY SINE Alu -12 299 1 2326 81 0 0 chr12 126624291 126624576 -17161879 - AluY SINE Alu -25 286 2 1879 151 14 0 chr12 126624592 126624871 -17161584 - AluSx SINE Alu -29 283 1 550 307 87 21 chr12 126624927 126625168 -17161287 - MIR SINE MIR 0 262 6 2282 109 7 0 chr12 126625897 126626200 -17160255 + AluSq SINE Alu 1 305 -8 240 281 78 23 chr12 126626547 126626675 -17159780 - MER104 DNA Tc2 -4 176 42 700 121 153 25 chr12 126626691 126626848 -17159607 - L1MA9 LINE L1 -35 6277 6101 2218 100 3 13 chr12 126626894 126627025 -17159430 + AluSx SINE Alu 6 137 -175 2533 41 0 3 chr12 126627025 126627316 -17159139 + AluY SINE Alu 1 290 -21 2218 100 3 13 chr12 126627316 126627483 -17158972 + AluSx SINE Alu 137 301 -11 301 320 48 10 chr12 126627492 126627595 -17158860 - MIR SINE MIR -155 107 1 293 161 54 27 chr12 126628174 126628286 -17158169 + (TATAA)n Simple_repeat Simple_repeat 1 115 0 2029 118 38 3 chr12 126628564 126628852 -17157603 + AluSx SINE Alu 1 298 -14 395 303 76 7 chr12 126629273 126629327 -17157128 - MIR3 SINE MIR -6 202 153 1770 145 0 84 chr12 126629327 126629465 -17156990 + AluSx SINE Alu 1 149 -163 2105 129 0 7 chr12 126629465 126629775 -17156680 + AluSx SINE Alu 1 308 -4 1770 145 0 84 chr12 126629775 126629968 -17156487 + AluSx SINE Alu 149 304 -8 395 303 76 7 chr12 126629968 126630058 -17156397 - MIR3 SINE MIR -55 153 48 2253 119 0 0 chr12 126630195 126630489 -17155966 - AluSx SINE Alu -18 294 1 314 245 112 66 chr12 126630490 126630532 -17155923 - L1M4 LINE L1 -1734 4412 4373 2190 117 0 3 chr12 126630532 126630831 -17155624 - AluSg1 SINE Alu -11 298 1 314 245 112 66 chr12 126630831 126630872 -17155583 - L1M4 LINE L1 -1773 4373 4335 1928 152 0 23 chr12 126630872 126631174 -17155281 + AluSx SINE Alu 1 295 -17 314 245 112 66 chr12 126631174 126631375 -17155080 - L1M4 LINE L1 -1811 4335 4114 720 205 0 16 chr12 126631396 126631518 -17154937 - FLAM_C SINE Alu -22 121 2 326 196 0 0 chr12 126631519 126631575 -17154880 - L1M4 LINE L1 -2020 4126 4071 2521 235 15 70 chr12 126631576 126632052 -17154403 - L1MEc LINE L1 -4906 1490 1082 2163 122 0 0 chr12 126632052 126632338 -17154117 + AluSx SINE Alu 1 286 -26 2521 235 15 70 chr12 126632338 126632739 -17153716 - L1MEc LINE L1 -5314 1082 661 913 175 0 0 chr12 126632759 126632913 -17153542 + AluJb SINE Alu 156 309 -3 2527 238 18 34 chr12 126632913 126633471 -17152984 - L1MEc LINE L1 -5729 667 119 1643 185 24 3 chr12 126633471 126633769 -17152686 - AluJb SINE Alu -8 304 1 2527 238 18 34 chr12 126633769 126633865 -17152590 - L1MEc LINE L1 -6277 119 23 2189 98 7 17 chr12 126634306 126634601 -17151854 - AluSc SINE Alu -17 292 1 215 317 32 49 chr12 126634782 126634905 -17151550 + L2 LINE L2 2738 2858 -456 23 0 0 0 chr12 126635002 126635025 -17151430 + AT_rich Low_complexity Low_complexity 1 23 0 359 297 84 26 chr12 126635052 126635207 -17151248 + L2 LINE L2 3150 3313 0 598 315 43 20 chr12 126635817 126636071 -17150384 + MIR SINE MIR 3 262 0 4215 166 52 39 chr12 126636097 126636931 -17149524 - L1MB8 LINE L1 0 6178 5331 2501 60 0 3 chr12 126636931 126637232 -17149223 - AluSp SINE Alu -13 300 1 4215 166 52 39 chr12 126637232 126637286 -17149169 - L1MB8 LINE L1 -847 5331 5279 678 126 198 0 chr12 126637641 126637752 -17148703 + AluJo SINE Alu 2 134 -178 2447 66 0 16 chr12 126637971 126638275 -17148180 + AluY SINE Alu 1 299 -12 513 343 72 32 chr12 126638314 126638687 -17147768 + L2 LINE L2 2908 3295 -18 353 75 19 0 chr12 126638687 126638740 -17147715 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 2174 104 10 19 chr12 126638952 126639261 -17147194 - AluSg SINE Alu -4 306 1 2123 100 11 4 chr12 126639266 126639578 -17146877 - AluSx SINE Alu 0 314 1 2326 89 0 22 chr12 126640007 126640321 -17146134 + AluY SINE Alu 1 307 -4 401 168 32 96 chr12 126640517 126640642 -17145813 - L1ME3A LINE L1 -92 6078 5962 348 250 9 19 chr12 126640679 126640787 -17145668 - L1ME3A LINE L1 -191 5979 5873 2474 61 3 0 chr12 126640913 126641207 -17145248 + AluY SINE Alu 1 295 -16 186 301 55 68 chr12 126641345 126641491 -17144964 + L2 LINE L2 3159 3302 -11 222 281 118 52 chr12 126641901 126642054 -17144401 + L2 LINE L2 2703 2865 -449 488 343 42 81 chr12 126642090 126642449 -17144006 + L2 LINE L2 2928 3272 0 1032 96 0 15 chr12 126642772 126642907 -17143548 + FLAM_C SINE Alu 1 133 0 1585 152 0 40 chr12 126643177 126643453 -17143002 - AluJo SINE Alu -8 304 40 2247 120 0 0 chr12 126643453 126643753 -17142702 - AluSx SINE Alu -12 300 1 27 73 0 0 chr12 126645158 126645213 -17141242 + AT_rich Low_complexity Low_complexity 1 55 0 2070 149 0 0 chr12 126645218 126645514 -17140941 + AluSx SINE Alu 1 296 -16 243 188 0 0 chr12 126645514 126645562 -17140893 + (TATG)n Simple_repeat Simple_repeat 2 49 0 485 190 216 0 chr12 126645857 126645973 -17140482 - MER3 DNA MER1_type -68 141 1 330 280 100 40 chr12 126647036 126647186 -17139269 - L1MC4a LINE L1 -1910 5898 5740 21 0 0 0 chr12 126647392 126647413 -17139042 + AT_rich Low_complexity Low_complexity 1 21 0 2021 133 0 10 chr12 126647415 126647716 -17138739 + AluSx SINE Alu 1 298 -14 1735 114 57 12 chr12 126647716 126647961 -17138494 + AluSx SINE Alu 19 275 -37 183 42 0 0 chr12 126647964 126647988 -17138467 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2609 61 0 0 chr12 126648205 126648516 -17137939 + AluY SINE Alu 1 311 0 1556 164 8 8 chr12 126648670 126648932 -17137523 + AluJb SINE Alu 1 262 -50 2033 111 19 32 chr12 126649054 126649369 -17137086 + AluSx SINE Alu 1 311 -1 237 243 0 0 chr12 126650080 126650150 -17136305 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 2037 114 11 4 chr12 126650150 126650455 -17136000 - AluSq SINE Alu 0 307 1 2173 60 89 3 chr12 126650922 126651204 -17135251 - AluSp SINE Alu -7 306 1 266 220 60 12 chr12 126651894 126652062 -17134393 + (TA)n Simple_repeat Simple_repeat 1 176 0 22 56 0 0 chr12 126652141 126652177 -17134278 + AT_rich Low_complexity Low_complexity 1 36 0 990 101 0 0 chr12 126652389 126652518 -17133937 + AluSg SINE Alu 1 129 -181 2482 77 7 0 chr12 126652554 126652864 -17133591 + AluSp SINE Alu 1 312 -1 345 286 0 9 chr12 126652928 126653040 -17133415 - AluSc SINE Alu -83 216 106 1853 252 51 26 chr12 126653564 126654299 -17132156 - L1M4 LINE L1 -915 5231 4516 2451 87 0 0 chr12 126654299 126654598 -17131857 - AluSx SINE Alu -13 299 1 1853 252 51 26 chr12 126654598 126654641 -17131814 - L1M4 LINE L1 -1630 4516 4476 2200 117 0 3 chr12 126654641 126654941 -17131514 - AluSg1 SINE Alu -10 299 1 1853 252 51 26 chr12 126654941 126654975 -17131480 - L1M4 LINE L1 -1670 4476 4324 2082 146 0 19 chr12 126654982 126655297 -17131158 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr12 126656346 126656367 -17130088 + (T)n Simple_repeat Simple_repeat 1 21 0 330 26 0 0 chr12 126657127 126657166 -17129289 + MADE1 DNA Mariner 42 80 0 2009 100 68 4 chr12 126657614 126657776 -17128679 - AluSx SINE Alu -13 299 110 192 40 0 0 chr12 126657776 126657801 -17128654 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2009 100 68 4 chr12 126657801 126657919 -17128536 - AluSx SINE Alu -202 110 1 1738 153 46 94 chr12 126657920 126658382 -17128073 + L1MB2 LINE L1 5656 6089 -82 668 158 0 50 chr12 126658385 126658505 -17127950 + AluJb SINE Alu 2 115 -197 2332 88 3 0 chr12 126658674 126658971 -17127484 + AluSx SINE Alu 1 298 -14 2198 101 0 29 chr12 126659687 126660003 -17126452 + AluSp SINE Alu 1 307 -6 268 181 60 78 chr12 126660209 126660325 -17126130 - L1ME4a LINE L1 -1 6120 6007 256 304 108 34 chr12 126660519 126660667 -17125788 - L1ME LINE L1 -585 5536 5378 2340 105 0 0 chr12 126660775 126661081 -17125374 - AluSg SINE Alu -4 306 1 1955 164 0 0 chr12 126661144 126661436 -17125019 - AluSx SINE Alu -18 294 3 3117 219 111 40 chr12 126661460 126662119 -17124336 - L1ME2 LINE L1 -21 6212 5602 2282 94 0 0 chr12 126662119 126662406 -17124049 - AluSq SINE Alu -26 287 1 3117 219 111 40 chr12 126662406 126663346 -17123109 - L1ME2 LINE L1 -631 5602 4731 2451 87 0 0 chr12 126663346 126663645 -17122810 - AluSx SINE Alu -13 299 1 3117 219 111 40 chr12 126663645 126663688 -17122767 - L1ME2 LINE L1 -1502 4731 4693 2200 117 0 3 chr12 126663688 126663988 -17122467 - AluSg1 SINE Alu -10 299 1 3117 219 111 40 chr12 126663988 126664029 -17122426 - L1ME2 LINE L1 -1540 4693 4656 1928 152 0 23 chr12 126664029 126664331 -17122124 + AluSx SINE Alu 1 295 -17 3117 219 111 40 chr12 126664331 126664532 -17121923 - L1ME2 LINE L1 -1577 4656 4183 720 205 0 16 chr12 126664553 126664675 -17121780 - FLAM_C SINE Alu -22 121 2 326 196 0 0 chr12 126664676 126664732 -17121723 - L1ME2 LINE L1 -2020 4195 4140 2521 235 15 70 chr12 126664733 126665209 -17121246 - L1ME2 LINE L1 -4906 1490 1082 2163 122 0 0 chr12 126665209 126665495 -17120960 + AluSx SINE Alu 1 286 -26 2521 235 15 70 chr12 126665495 126665896 -17120559 - L1ME2 LINE L1 -5314 1082 661 913 175 0 0 chr12 126665916 126666070 -17120385 + AluJb SINE Alu 156 309 -3 2527 238 18 34 chr12 126666070 126666628 -17119827 - L1ME2 LINE L1 -5729 667 119 1643 185 24 3 chr12 126666628 126666926 -17119529 - AluJb SINE Alu -8 304 1 2527 238 18 34 chr12 126666926 126667022 -17119433 - L1ME2 LINE L1 -6277 119 23 2189 98 7 17 chr12 126667463 126667758 -17118697 - AluSc SINE Alu -17 292 1 215 317 32 49 chr12 126667939 126668062 -17118393 + L2 LINE L2 2738 2858 -456 23 0 0 0 chr12 126668159 126668182 -17118273 + AT_rich Low_complexity Low_complexity 1 23 0 359 297 84 26 chr12 126668209 126668364 -17118091 + L2 LINE L2 3150 3313 0 598 315 43 20 chr12 126668974 126669228 -17117227 + MIR SINE MIR 3 262 0 4215 166 52 39 chr12 126669254 126670088 -17116367 - L1MB8 LINE L1 0 6178 5331 2406 73 3 3 chr12 126670088 126670388 -17116067 - AluSp SINE Alu -13 300 1 4215 166 52 39 chr12 126670388 126670442 -17116013 - L1MB8 LINE L1 -847 5331 5279 678 126 198 0 chr12 126670797 126670908 -17115547 + AluJo SINE Alu 2 134 -178 2447 66 0 16 chr12 126671127 126671431 -17115024 + AluY SINE Alu 1 299 -12 513 343 72 32 chr12 126671470 126671843 -17114612 + L2 LINE L2 2908 3295 -18 353 75 19 0 chr12 126671843 126671896 -17114559 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 2159 107 10 19 chr12 126672108 126672417 -17114038 - AluSg SINE Alu -4 306 1 231 61 0 0 chr12 126672418 126672451 -17114004 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2123 100 11 4 chr12 126672451 126672732 -17113723 - AluSx SINE Alu -29 283 1 2313 92 0 22 chr12 126673161 126673475 -17112980 + AluY SINE Alu 1 307 -4 401 168 32 96 chr12 126673671 126673796 -17112659 - L1ME3A LINE L1 -92 6078 5962 348 250 9 19 chr12 126673833 126673941 -17112514 - L1ME3A LINE L1 -191 5979 5873 2501 54 3 0 chr12 126674067 126674361 -17112094 + AluY SINE Alu 1 295 -16 186 301 55 68 chr12 126674499 126674645 -17111810 + L2 LINE L2 3159 3302 -11 222 281 118 52 chr12 126675055 126675208 -17111247 + L2 LINE L2 2703 2865 -449 488 343 42 81 chr12 126675244 126675603 -17110852 + L2 LINE L2 2928 3272 0 1032 96 0 15 chr12 126675926 126676061 -17110394 + FLAM_C SINE Alu 1 133 0 1585 152 0 40 chr12 126676331 126676607 -17109848 - AluJo SINE Alu -8 304 40 2247 120 0 0 chr12 126676607 126676907 -17109548 - AluSx SINE Alu -12 300 1 27 73 0 0 chr12 126678315 126678370 -17108085 + AT_rich Low_complexity Low_complexity 1 55 0 2070 149 0 0 chr12 126678375 126678671 -17107784 + AluSx SINE Alu 1 296 -16 243 188 0 0 chr12 126678671 126678719 -17107736 + (TATG)n Simple_repeat Simple_repeat 2 49 0 485 190 216 0 chr12 126679014 126679130 -17107325 - MER3 DNA MER1_type -68 141 1 330 280 100 40 chr12 126680191 126680341 -17106114 - L1MC4a LINE L1 -1910 5898 5740 21 0 0 0 chr12 126680547 126680568 -17105887 + AT_rich Low_complexity Low_complexity 1 21 0 1976 133 3 10 chr12 126680570 126680870 -17105585 + AluSx SINE Alu 1 298 -14 1735 114 57 12 chr12 126680870 126681115 -17105340 + AluSx SINE Alu 19 275 -37 183 42 0 0 chr12 126681118 126681142 -17105313 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2638 55 0 0 chr12 126681359 126681668 -17104787 + AluY SINE Alu 1 309 -2 1556 164 8 8 chr12 126681826 126682088 -17104367 + AluJb SINE Alu 1 262 -50 2004 114 19 32 chr12 126682210 126682525 -17103930 + AluSx SINE Alu 1 311 -1 180 111 0 0 chr12 126682811 126682838 -17103617 + (T)n Simple_repeat Simple_repeat 1 27 0 248 49 0 24 chr12 126683234 126683256 -17103199 + (TA)n Simple_repeat Simple_repeat 2 24 -17 213 94 0 0 chr12 126683256 126683288 -17103167 + (CA)n Simple_repeat Simple_repeat 2 33 0 248 49 0 24 chr12 126683288 126683306 -17103149 + (TA)n Simple_repeat Simple_repeat 24 41 0 2037 114 11 4 chr12 126683306 126683611 -17102844 - AluSq SINE Alu 0 307 1 2145 64 89 3 chr12 126684078 126684360 -17102095 - AluSp SINE Alu -7 306 1 266 220 60 12 chr12 126685050 126685218 -17101237 + (TA)n Simple_repeat Simple_repeat 1 176 0 22 56 0 0 chr12 126685297 126685333 -17101122 + AT_rich Low_complexity Low_complexity 1 36 0 1020 93 0 0 chr12 126685545 126685674 -17100781 + AluSg SINE Alu 1 129 -181 2491 77 6 0 chr12 126685710 126686021 -17100434 + AluSp SINE Alu 1 313 0 1547 132 0 5 chr12 126686084 126686304 -17100151 - AluSx SINE Alu -93 219 1 1002 165 0 6 chr12 126687389 126687553 -17098902 + FRAM SINE Alu 1 162 -14 344 324 38 35 chr12 126688565 126688713 -17097742 - MIR SINE MIR -66 142 17 21 36 0 0 chr12 126689341 126689369 -17097086 + AT_rich Low_complexity Low_complexity 1 28 0 191 35 0 35 chr12 126690394 126690423 -17096032 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1014 143 25 0 chr12 126691483 126691644 -17094811 + AluSg/x SINE Alu 137 301 -11 2450 62 0 49 chr12 126691648 126691973 -17094482 + AluY SINE Alu 3 311 0 2062 136 0 3 chr12 126692436 126692737 -17093718 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr12 126692905 126692926 -17093529 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr12 126692926 126692971 -17093484 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1856 150 4 0 chr12 126692979 126693252 -17093203 - AluSx SINE Alu -38 274 1 820 201 84 7 chr12 126693473 126693627 -17092828 + FRAM SINE Alu 1 166 0 1922 136 6 22 chr12 126693632 126693728 -17092727 + AluJb SINE Alu 1 97 -215 8500 41 9 0 chr12 126693728 126694688 -17091767 - LTR5 LTR ERVK 0 969 1 1922 136 6 22 chr12 126694688 126694907 -17091548 + AluJb SINE Alu 97 311 -1 2339 73 0 0 chr12 126695054 126695342 -17091113 - AluSg SINE Alu -22 288 1 320 300 101 95 chr12 126695786 126696342 -17090113 + L1M2 LINE L1 824 1382 -5467 491 228 88 78 chr12 126697455 126697648 -17088807 + MER102b DNA MER1_type 132 326 -15 1405 128 117 26 chr12 126697902 126698168 -17088287 - AluJo SINE Alu -22 290 1 373 308 17 17 chr12 126698594 126698714 -17087741 + MIR3 SINE MIR 37 156 -52 342 262 58 10 chr12 126698729 126698832 -17087623 - MER117 DNA MER1_type -38 159 52 188 161 0 0 chr12 126698837 126698868 -17087587 + MIR3 SINE MIR 151 181 -27 2056 106 34 3 chr12 126699191 126699483 -17086972 + AluSq SINE Alu 1 301 -12 212 349 0 0 chr12 126699520 126699583 -17086872 - L2 LINE L2 -9 3263 3201 1345 126 0 0 chr12 126699595 126699778 -17086677 + AluSg/x SINE Alu 85 267 -45 6321 99 51 19 chr12 126700202 126700867 -17085588 - L1PA15 LINE L1 -3 6162 5443 2105 109 0 36 chr12 126700867 126701169 -17085286 - AluSx SINE Alu -11 301 11 6321 99 51 19 chr12 126701169 126701649 -17084806 - L1PA15 LINE L1 -722 5443 4980 1171 146 0 0 chr12 126701649 126701814 -17084641 - AluSg/x SINE Alu -16 294 130 2284 97 0 7 chr12 126701814 126702122 -17084333 - AluSg SINE Alu 0 310 5 2320 88 3 0 chr12 126702126 126702423 -17084032 - AluSx SINE Alu -14 298 1 474 123 0 0 chr12 126702423 126702488 -17083967 + LTR8 LTR ERV1 627 691 0 327 191 0 48 chr12 126702491 126702554 -17083901 - MIR SINE MIR -64 144 85 2609 37 0 3 chr12 126702613 126702912 -17083543 - AluY SINE Alu -12 299 2 2259 99 7 0 chr12 126702915 126703209 -17083246 - AluSx SINE Alu -16 296 1 1210 151 21 0 chr12 126703264 126703456 -17082999 + AluJo SINE Alu 87 282 -30 2154 145 16 25 chr12 126703456 126703821 -17082634 - MER84 LTR ERVI 0 507 146 1769 112 28 4 chr12 126703822 126704073 -17082382 + AluSx SINE Alu 1 257 -55 2252 108 3 13 chr12 126704101 126704415 -17082040 + AluSx SINE Alu 2 312 0 788 158 110 6 chr12 126704425 126704589 -17081866 - L1MB3 LINE L1 -202 5981 5801 730 193 82 47 chr12 126704614 126704847 -17081608 + L1ME3 LINE L1 5675 5915 -249 1734 186 3 0 chr12 126704849 126705140 -17081315 - AluSx SINE Alu -20 292 1 1337 210 66 42 chr12 126705230 126705477 -17080978 - MER58B DNA MER1_type -2079 341 82 2202 104 23 7 chr12 126705477 126705784 -17080671 + AluSx SINE Alu 1 312 0 1337 210 66 42 chr12 126705784 126705869 -17080586 - MER58B DNA MER1_type -2338 82 1 1939 134 7 0 chr12 126706186 126706478 -17079977 + AluSx SINE Alu 1 294 -18 1074 166 24 24 chr12 126706609 126706814 -17079641 - AluJo SINE Alu -22 290 86 1459 160 7 91 chr12 126708435 126708650 -17077805 + AluJo SINE Alu 1 184 -128 2317 53 56 0 chr12 126708650 126708934 -17077521 - AluY SINE Alu -11 300 1 1459 160 7 91 chr12 126708934 126709025 -17077430 + AluJo SINE Alu 184 281 -31 393 22 0 0 chr12 126709028 126709074 -17077381 + (CA)n Simple_repeat Simple_repeat 1 46 0 2452 74 0 3 chr12 126709403 126709702 -17076753 - AluSg SINE Alu -12 298 1 242 262 119 8 chr12 126709791 126709917 -17076538 - L1ME4a LINE L1 -6 6115 5976 2003 142 0 3 chr12 126710020 126710329 -17076126 + AluJb SINE Alu 1 308 -4 277 262 56 0 chr12 126710354 126710461 -17075994 - L1ME4a LINE L1 -2021 5787 5675 296 143 36 0 chr12 126710535 126710591 -17075864 - Alu SINE Alu -1 300 243 1444 86 5 63 chr12 126710591 126710646 -17075809 + AluSg/x SINE Alu 89 146 -164 2272 45 0 24 chr12 126710646 126710990 -17075465 + AluY SINE Alu 1 337 0 1444 86 5 63 chr12 126710990 126711155 -17075300 + AluSg/x SINE Alu 146 297 -13 486 248 50 30 chr12 126711160 126711362 -17075093 + L1ME3 LINE L1 5945 6150 -12 2388 72 3 0 chr12 126711436 126711727 -17074728 + AluY SINE Alu 2 293 -18 2374 84 3 0 chr12 126712942 126713241 -17073214 - AluSg SINE Alu -10 300 1 1337 210 66 42 chr12 126713331 126713578 -17072877 - MER58B DNA MER1_type -2079 341 82 2202 104 23 7 chr12 126713578 126713885 -17072570 + AluSx SINE Alu 1 312 0 1337 210 66 42 chr12 126713885 126713970 -17072485 - MER58B DNA MER1_type -2338 82 1 1856 136 4 0 chr12 126714287 126714566 -17071889 + AluSx SINE Alu 1 280 -32 1568 133 16 20 chr12 126714724 126714972 -17071483 + MER2 DNA MER2_type 3 249 -96 243 115 167 77 chr12 126714934 126715012 -17071443 - MER2 DNA MER2_type -57 288 204 * 564 208 0 0 chr12 126715018 126715114 -17071341 + MER2 DNA MER2_type 250 345 0 1535 77 10 5 chr12 126715132 126715352 -17071103 + AluSg/x SINE Alu 87 307 0 829 149 16 0 chr12 126715649 126715770 -17070685 - FRAM SINE Alu -34 142 20 219 191 106 0 chr12 126715867 126715914 -17070541 + L2 LINE L2 3027 3078 -194 1215 164 27 76 chr12 126715985 126716248 -17070207 - AluJb SINE Alu -23 289 40 2247 120 0 0 chr12 126716248 126716548 -17069907 - AluSx SINE Alu -12 300 1 27 73 0 0 chr12 126717953 126718008 -17068447 + AT_rich Low_complexity Low_complexity 1 55 0 2070 149 0 0 chr12 126718013 126718309 -17068146 + AluSx SINE Alu 1 296 -16 243 188 0 0 chr12 126718309 126718357 -17068098 + (TATG)n Simple_repeat Simple_repeat 2 49 0 485 190 216 0 chr12 126718652 126718768 -17067687 - MER3 DNA MER1_type -68 141 1 330 280 100 40 chr12 126719831 126719981 -17066474 - L1MC4a LINE L1 -1910 5898 5740 21 0 0 0 chr12 126720187 126720208 -17066247 + AT_rich Low_complexity Low_complexity 1 21 0 2021 133 0 10 chr12 126720210 126720511 -17065944 + AluSx SINE Alu 1 298 -14 1735 114 57 12 chr12 126720511 126720756 -17065699 + AluSx SINE Alu 19 275 -37 183 42 0 0 chr12 126720759 126720783 -17065672 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2609 61 0 0 chr12 126721000 126721311 -17065144 + AluY SINE Alu 1 311 0 1556 164 8 8 chr12 126721465 126721727 -17064728 + AluJb SINE Alu 1 262 -50 2033 111 19 32 chr12 126721849 126722164 -17064291 + AluSx SINE Alu 1 311 -1 237 243 0 0 chr12 126722875 126722945 -17063510 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 2037 114 11 4 chr12 126722945 126723250 -17063205 - AluSq SINE Alu 0 307 1 2173 60 89 3 chr12 126723717 126723999 -17062456 - AluSp SINE Alu -7 306 1 266 220 60 12 chr12 126724689 126724857 -17061598 + (TA)n Simple_repeat Simple_repeat 1 176 0 22 56 0 0 chr12 126724936 126724972 -17061483 + AT_rich Low_complexity Low_complexity 1 36 0 990 101 0 0 chr12 126725184 126725313 -17061142 + AluSg SINE Alu 1 129 -181 2491 77 6 0 chr12 126725349 126725660 -17060795 + AluSp SINE Alu 1 313 0 1547 132 0 5 chr12 126725723 126725943 -17060512 - AluSx SINE Alu -93 219 1 1002 165 0 6 chr12 126727028 126727192 -17059263 + FRAM SINE Alu 1 162 -14 349 311 38 35 chr12 126728204 126728352 -17058103 - MIR SINE MIR -66 142 17 21 36 0 0 chr12 126728980 126729008 -17057447 + AT_rich Low_complexity Low_complexity 1 28 0 191 35 0 35 chr12 126730033 126730062 -17056393 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1003 149 25 0 chr12 126731121 126731282 -17055173 + AluSg/x SINE Alu 137 301 -11 2450 62 0 49 chr12 126731286 126731611 -17054844 + AluY SINE Alu 3 311 0 606 239 55 6 chr12 126731688 126731851 -17054604 - MIR SINE MIR -31 231 61 282 29 0 0 chr12 126732374 126732409 -17054046 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4467 22 0 4 chr12 126732412 126732903 -17053552 - L1PA4 LINE L1 -2 6153 5665 1909 176 3 0 chr12 126732903 126733204 -17053251 - AluSx SINE Alu -10 302 1 835 232 93 10 chr12 126733608 126733802 -17052653 + MER63A DNA MER1_type 1 210 0 21 95 0 0 chr12 126733813 126733876 -17052579 + AT_rich Low_complexity Low_complexity 1 63 0 2184 136 3 0 chr12 126733877 126734186 -17052269 - AluSx SINE Alu -2 310 1 22 70 0 0 chr12 126734414 126734457 -17051998 + AT_rich Low_complexity Low_complexity 1 43 0 706 229 89 73 chr12 126734521 126734926 -17051529 - L1MC4a LINE L1 -98 6023 5701 1943 149 10 3 chr12 126735059 126735367 -17051088 + AluY SINE Alu 1 310 -1 403 270 155 49 chr12 126735392 126735740 -17050715 + L1P LINE L1 4662 5046 -1100 694 224 41 0 chr12 126735742 126735889 -17050566 + MIR SINE MIR 108 260 -2 2188 103 0 3 chr12 126735889 126736180 -17050275 - AluY SINE Alu -21 290 1 2201 115 3 13 chr12 126736430 126736742 -17049713 + AluSq SINE Alu 1 309 -4 746 190 0 8 chr12 126736785 126736906 -17049549 + AluJb SINE Alu 178 297 -15 319 295 131 25 chr12 126736912 126737274 -17049181 + L1ME3 LINE L1 5336 5875 -287 2303 107 3 0 chr12 126737378 126737676 -17048779 + AluSp SINE Alu 1 299 -14 237 321 12 60 chr12 126737955 126738039 -17048416 + MIR SINE MIR 4 83 -179 522 301 52 0 chr12 126738136 126738309 -17048146 + MIR SINE MIR 77 258 -4 34 84 0 0 chr12 126738460 126738543 -17047912 + AT_rich Low_complexity Low_complexity 1 83 0 1044 150 63 63 chr12 126738670 126738751 -17047704 - AluJb SINE Alu -105 207 127 1976 148 7 0 chr12 126738751 126739041 -17047414 - AluSg SINE Alu -18 292 1 1044 150 63 63 chr12 126739041 126739166 -17047289 - AluJb SINE Alu -184 128 1 2033 111 17 17 chr12 126739237 126739535 -17046920 + AluSx SINE Alu 1 298 -14 248 136 0 0 chr12 126739541 126739585 -17046870 + L1MB2 LINE L1 6126 6169 -2 2333 98 0 0 chr12 126739594 126739889 -17046566 + AluSg SINE Alu 1 295 -15 922 163 35 41 chr12 126740008 126740180 -17046275 + AluJo SINE Alu 1 171 -141 1288 138 0 0 chr12 126740199 126740388 -17046067 + AluSg/x SINE Alu 121 309 -3 831 179 25 37 chr12 126740392 126740554 -17045901 + AluJo SINE Alu 117 276 -36 1719 194 10 0 chr12 126740706 126741005 -17045450 - AluJb SINE Alu -10 302 1 445 161 21 43 chr12 126741025 126741118 -17045337 - FLAM_C SINE Alu -16 127 37 233 300 88 0 chr12 126741121 126741201 -17045254 - MIR SINE MIR -68 194 108 186 288 100 50 chr12 126741531 126741611 -17044844 + MIR SINE MIR 58 141 -67 2231 113 0 0 chr12 126741621 126741921 -17044534 + AluSx SINE Alu 1 300 -12 2245 90 0 4 chr12 126742156 126742435 -17044020 - AluSq SINE Alu -35 278 1 344 332 62 43 chr12 126742497 126742708 -17043747 - MIR SINE MIR 0 262 48 273 324 75 52 chr12 126743012 126743185 -17043270 - MIR SINE MIR -81 181 5 2481 181 46 15 chr12 126743241 126743766 -17042689 - L1MB7 LINE L1 -19 6165 5625 2262 104 0 0 chr12 126743827 126744114 -17042341 + AluSg SINE Alu 7 293 -17 2225 108 0 7 chr12 126744561 126744857 -17041598 - AluSx SINE Alu -18 294 1 2195 82 3 7 chr12 126744865 126745158 -17041297 - AluY SINE Alu -17 294 3 764 264 255 31 chr12 126745176 126745915 -17040540 + L2 LINE L2 2412 3311 -2 1785 148 17 28 chr12 126746128 126746419 -17040036 + AluJo SINE Alu 1 288 -24 1668 129 88 22 chr12 126746654 126746926 -17039529 + AluSg SINE Alu 2 291 -19 195 121 0 30 chr12 126747206 126747239 -17039216 + MIR3 SINE MIR 154 185 -23 347 276 125 7 chr12 126747648 126747732 -17038723 + MER69A DNA AcHobo 1 74 -2452 2088 130 3 7 chr12 126747732 126748031 -17038424 - AluSx SINE Alu -14 298 1 2333 94 3 3 chr12 126748033 126748342 -17038113 - AluY SINE Alu -2 309 1 347 276 125 7 chr12 126748342 126748406 -17038049 + MER69A DNA AcHobo 74 170 -7 1806 164 3 20 chr12 126748576 126748875 -17037580 - AluJb SINE Alu -18 294 1 25 0 0 0 chr12 126749190 126749215 -17037240 + AT_rich Low_complexity Low_complexity 1 25 0 1227 108 6 0 chr12 126749243 126749409 -17037046 - AluSg/x SINE Alu -1 311 145 2594 165 40 62 chr12 126749839 126750422 -17036033 + L1MB8 LINE L1 5603 6172 -6 2507 55 0 13 chr12 126750587 126750894 -17035561 + AluY SINE Alu 1 303 -8 186 43 0 0 chr12 126751101 126751124 -17035331 + (TTA)n Simple_repeat Simple_repeat 2 24 0 251 296 0 0 chr12 126751152 126751223 -17035232 - L2 LINE L2 -568 2746 2676 1996 115 69 0 chr12 126751894 126752182 -17034273 + AluSx SINE Alu 1 308 -4 1206 136 0 0 chr12 126752232 126752409 -17034046 + AluSg/x SINE Alu 132 308 -4 193 0 61 30 chr12 126752416 126752449 -17034006 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2282 107 7 0 chr12 126752527 126752836 -17033619 - AluSp SINE Alu -2 311 1 754 311 81 29 chr12 126753221 126753648 -17032807 + L1ME4a LINE L1 5581 6033 -88 2425 90 7 0 chr12 126753648 126753958 -17032497 - AluSx SINE Alu 0 312 1 754 311 81 29 chr12 126753958 126753974 -17032481 + L1ME4a LINE L1 6033 6047 -74 314 245 112 66 chr12 126753959 126754001 -17032454 - L1M4 LINE L1 -1734 4412 4373 * 2200 117 0 3 chr12 126754001 126754301 -17032154 - AluSg1 SINE Alu -10 299 1 314 245 112 66 chr12 126754301 126754342 -17032113 - L1M4 LINE L1 -1773 4373 4335 1872 156 3 23 chr12 126754342 126754643 -17031812 + AluSx SINE Alu 1 295 -17 314 245 112 66 chr12 126754643 126754844 -17031611 - L1M4 LINE L1 -1811 4335 4114 720 205 0 16 chr12 126754865 126754987 -17031468 - FLAM_C SINE Alu -22 121 2 326 196 0 0 chr12 126754988 126755044 -17031411 - L1M4 LINE L1 -2020 4126 4071 2521 235 15 70 chr12 126755045 126755521 -17030934 - L1MEc LINE L1 -4906 1490 1082 2176 119 0 0 chr12 126755521 126755807 -17030648 + AluSx SINE Alu 1 286 -26 2521 235 15 70 chr12 126755807 126756208 -17030247 - L1MEc LINE L1 -5314 1082 661 913 175 0 0 chr12 126756228 126756382 -17030073 + AluJb SINE Alu 156 309 -3 2527 238 18 34 chr12 126756382 126756940 -17029515 - L1MEc LINE L1 -5729 667 119 1643 185 24 3 chr12 126756940 126757238 -17029217 - AluJb SINE Alu -8 304 1 2527 238 18 34 chr12 126757238 126757334 -17029121 - L1MEc LINE L1 -6277 119 23 2203 95 7 17 chr12 126757775 126758070 -17028385 - AluSc SINE Alu -17 292 1 215 317 32 49 chr12 126758251 126758374 -17028081 + L2 LINE L2 2738 2858 -456 23 0 0 0 chr12 126758471 126758494 -17027961 + AT_rich Low_complexity Low_complexity 1 23 0 359 297 84 26 chr12 126758521 126758676 -17027779 + L2 LINE L2 3150 3313 0 598 315 43 20 chr12 126759286 126759540 -17026915 + MIR SINE MIR 3 262 0 4215 166 52 39 chr12 126759566 126760400 -17026055 - L1MB8 LINE L1 0 6178 5331 2513 57 0 3 chr12 126760400 126760701 -17025754 - AluSp SINE Alu -13 300 1 4215 166 52 39 chr12 126760701 126760755 -17025700 - L1MB8 LINE L1 -847 5331 5279 678 126 198 0 chr12 126761110 126761221 -17025234 + AluJo SINE Alu 2 134 -178 2180 74 13 26 chr12 126761440 126761749 -17024706 + AluY SINE Alu 1 305 -6 926 154 24 0 chr12 126761755 126761924 -17024531 + AluSq SINE Alu 138 310 -3 886 208 29 6 chr12 126761925 126762098 -17024357 - L1M4c LINE L1 -5878 506 330 1771 119 4 22 chr12 126762313 126762581 -17023874 - AluSx SINE Alu -49 263 1 1002 185 38 45 chr12 126762582 126762847 -17023608 - L1MB8 LINE L1 -1670 4476 4214 1202 181 85 51 chr12 126762848 126763141 -17023314 + AluJb SINE Alu 1 303 -9 1978 129 19 26 chr12 126764339 126764650 -17021805 + AluSx SINE Alu 2 310 -2 429 329 21 21 chr12 126764829 126764969 -17021486 + MIR3 SINE MIR 63 202 -6 2215 113 7 3 chr12 126765994 126766296 -17020159 + AluSq SINE Alu 9 311 -2 186 43 0 0 chr12 126766299 126766322 -17020133 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 275 306 8 30 chr12 126767276 126767410 -17019045 - HAL1b LINE L1 -999 349 219 22 0 0 0 chr12 126767925 126767947 -17018508 + AT_rich Low_complexity Low_complexity 1 22 0 2319 115 0 0 chr12 126768079 126768383 -17018072 - AluSx SINE Alu -8 304 1 27 62 0 0 chr12 126768868 126768916 -17017539 + AT_rich Low_complexity Low_complexity 1 48 0 1628 167 4 32 chr12 126769288 126769569 -17016886 - AluJb SINE Alu -39 273 1 2333 93 3 0 chr12 126769748 126770048 -17016407 + AluSq SINE Alu 4 304 -9 487 302 29 17 chr12 126770407 126770579 -17015876 + MER5B DNA MER1_type 4 177 -1 190 224 176 96 chr12 126770637 126770762 -17015693 - MIR SINE MIR -82 180 46 384 313 80 25 chr12 126771209 126771372 -17015083 + MER5A DNA MER1_type 17 188 -1 473 217 26 35 chr12 126771501 126771616 -17014839 + MER117 DNA MER1_type 42 155 -42 300 256 207 16 chr12 126773098 126773219 -17013236 - L2 LINE L2 -5 3267 3124 235 282 90 0 chr12 126773219 126773297 -17013158 - L2 LINE L2 -6 3266 3182 2260 87 28 0 chr12 126773358 126773645 -17012810 + AluSg SINE Alu 1 295 -15 504 343 170 26 chr12 126773846 126775141 -17011314 - L2 LINE L2 -108 3164 1657 546 316 66 55 chr12 126775157 126775413 -17011042 - L2 LINE L2 0 3272 3014 666 355 80 13 chr12 126775453 126775904 -17010551 - L2 LINE L2 -400 2914 2434 2283 107 0 0 chr12 126775921 126776212 -17010243 + AluSg SINE Alu 3 293 -17 2225 108 0 7 chr12 126776659 126776955 -17009500 - AluSx SINE Alu -18 294 1 2307 78 0 3 chr12 126776963 126777258 -17009197 - AluY SINE Alu -17 294 1 1330 255 225 24 chr12 126777279 126778033 -17008422 + L2 LINE L2 2415 3311 -2 1785 148 17 28 chr12 126778246 126778537 -17007918 + AluJo SINE Alu 1 288 -24 1648 133 89 15 chr12 126778772 126779042 -17007413 + AluSg SINE Alu 2 291 -19 195 121 0 30 chr12 126779322 126779355 -17007100 + MIR3 SINE MIR 154 185 -23 347 276 125 7 chr12 126779764 126779848 -17006607 + MER69A DNA AcHobo 1 74 -2452 2073 134 3 7 chr12 126779848 126780147 -17006308 - AluSx SINE Alu -14 298 1 2333 94 3 3 chr12 126780149 126780458 -17005997 - AluY SINE Alu -2 309 1 347 276 125 7 chr12 126780458 126780522 -17005933 + MER69A DNA AcHobo 74 170 -7 1806 164 3 20 chr12 126780692 126780991 -17005464 - AluJb SINE Alu -18 294 1 25 0 0 0 chr12 126781306 126781331 -17005124 + AT_rich Low_complexity Low_complexity 1 25 0 1227 108 6 0 chr12 126781359 126781525 -17004930 - AluSg/x SINE Alu -1 311 145 1546 208 64 3 chr12 126781955 126782330 -17004125 + L1MB8 LINE L1 5603 6000 -178 1990 103 4 4 chr12 126782472 126782744 -17003711 - AluSx SINE Alu -38 274 3 2435 96 0 3 chr12 126782833 126783145 -17003310 - AluSx SINE Alu -1 311 1 252 348 56 34 chr12 126783180 126783358 -17003097 + MIR SINE MIR 35 216 -46 212 258 153 48 chr12 126783634 126783758 -17002697 - MIR SINE MIR -44 218 82 191 314 0 0 chr12 126783806 126783857 -17002598 - MER5A DNA MER1_type 0 189 139 511 171 0 0 chr12 126784383 126784465 -17001990 + L2 LINE L2 3232 3313 0 2095 105 0 11 chr12 126784688 126784974 -17001481 + AluSq SINE Alu 5 287 -26 829 140 0 0 chr12 126785120 126785234 -17001221 + FLAM_C SINE Alu 6 119 -24 249 238 12 38 chr12 126785265 126785345 -17001110 - MLT1K LTR MaLR 0 588 511 236 29 0 29 chr12 126785894 126785928 -17000527 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 487 302 29 17 chr12 126786144 126786316 -17000139 + MER5B DNA MER1_type 4 177 -1 190 224 176 96 chr12 126786374 126786499 -16999956 - MIR SINE MIR -82 180 46 384 313 80 25 chr12 126786946 126787109 -16999346 + MER5A DNA MER1_type 17 188 -1 473 217 26 35 chr12 126787238 126787353 -16999102 + MER117 DNA MER1_type 42 155 -42 281 246 0 0 chr12 126788899 126788956 -16997499 - L2 LINE L2 -92 3180 3124 225 282 90 0 chr12 126788956 126789034 -16997421 - L2 LINE L2 -6 3266 3182 2269 87 28 0 chr12 126789095 126789383 -16997072 + AluSg SINE Alu 1 296 -14 504 343 170 26 chr12 126789584 126790879 -16995576 - L2 LINE L2 -108 3164 1657 546 316 66 55 chr12 126790895 126791151 -16995304 - L2 LINE L2 0 3272 3014 1269 321 99 40 chr12 126791191 126791656 -16994799 - L2 LINE L2 -400 2914 2478 2234 108 0 16 chr12 126791656 126791962 -16994493 + AluSx SINE Alu 1 301 -11 1269 321 99 40 chr12 126791962 126792558 -16993897 - L2 LINE L2 -836 2478 1790 340 310 0 0 chr12 126792574 126792661 -16993794 + L2 LINE L2 3181 3267 -5 1887 140 35 7 chr12 126792669 126792955 -16993500 + AluJo SINE Alu 1 294 -18 561 260 4 123 chr12 126793073 126793236 -16993219 - MIR SINE MIR -14 248 118 1016 186 30 81 chr12 126793236 126793400 -16993055 - MER58A DNA MER1_type -2196 224 74 2193 103 3 0 chr12 126793400 126793690 -16992765 + AluSx SINE Alu 1 291 -21 1016 186 30 81 chr12 126793690 126793761 -16992694 - MER58A DNA MER1_type -2346 74 1 561 260 4 123 chr12 126793761 126793824 -16992631 - MIR SINE MIR -144 118 49 2057 116 11 3 chr12 126793955 126794240 -16992215 + AluSx SINE Alu 1 287 -25 1158 112 53 16 chr12 126794442 126794472 -16991983 + AluSg/x SINE Alu 105 132 -180 2417 94 3 0 chr12 126794472 126794780 -16991675 + AluSp SINE Alu 1 309 -4 1158 112 53 16 chr12 126794780 126794936 -16991519 + AluSg/x SINE Alu 132 298 -14 352 248 57 78 chr12 126797306 126797447 -16989008 - HAL1b LINE L1 -702 646 509 996 174 0 17 chr12 126797735 126797907 -16988548 + FRAM SINE Alu 1 168 -8 279 254 82 37 chr12 126798144 126798278 -16988177 + HAL1b LINE L1 97 236 -1112 912 255 85 17 chr12 126798340 126798478 -16987977 - L2 LINE L2 -4 3309 3182 2191 114 0 0 chr12 126798478 126798786 -16987669 + AluSg SINE Alu 1 308 -2 912 255 85 17 chr12 126798786 126798941 -16987514 - L2 LINE L2 -131 3182 2996 995 242 45 87 chr12 126798964 126799390 -16987065 + HAL1b LINE L1 304 711 -637 1664 184 40 7 chr12 126799513 126799812 -16986643 + AluJb SINE Alu 1 309 -3 2001 117 14 3 chr12 126799818 126800100 -16986355 + AluSx SINE Alu 3 287 -25 1589 168 14 18 chr12 126801137 126801422 -16985033 - AluJo SINE Alu -18 294 11 612 293 25 42 chr12 126801650 126801889 -16984566 - MIR SINE MIR 0 262 28 284 186 0 14 chr12 126803238 126803308 -16983147 + (TG)n Simple_repeat Simple_repeat 2 70 0 222 91 0 0 chr12 126803579 126803612 -16982843 + (A)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr12 126804020 126804042 -16982413 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 207 100 0 0 chr12 126805005 126805035 -16981420 + (CA)n Simple_repeat Simple_repeat 1 30 0 1627 76 0 5 chr12 126805311 126805509 -16980946 - MER107 DNA MER1_type 0 197 1 2169 83 0 0 chr12 126805545 126805811 -16980644 + AluSq SINE Alu 30 295 -18 2293 82 0 0 chr12 126806333 126806614 -16979841 + AluSx SINE Alu 10 290 -22 448 69 0 0 chr12 126806766 126806824 -16979631 + AluSg/x SINE Alu 172 229 -83 949 155 0 0 chr12 126807223 126807365 -16979090 - AluSg/x SINE Alu -7 305 164 1067 159 101 14 chr12 126807365 126807573 -16978882 - AluJb SINE Alu -84 228 3 2296 98 3 0 chr12 126807606 126807902 -16978553 - AluSq SINE Alu -16 297 1 261 222 121 50 chr12 126807936 126808035 -16978420 + L2 LINE L2 2716 2821 -493 221 355 100 9 chr12 126808170 126808280 -16978175 + L2 LINE L2 3102 3221 -51 304 290 8 81 chr12 126808539 126808663 -16977792 - L2 LINE L2 -5 3267 3153 684 351 105 18 chr12 126809143 126809810 -16976645 - L2 LINE L2 0 3272 2542 2136 111 7 16 chr12 126810900 126811207 -16975248 - AluSx SINE Alu -8 304 1 2218 122 3 3 chr12 126811590 126811894 -16974561 + AluSq SINE Alu 1 304 -9 558 295 42 92 chr12 126812180 126812789 -16973666 - L2 LINE L2 -50 3222 2647 554 163 26 200 chr12 126812802 126812933 -16973522 + MER5A DNA MER1_type 1 91 -98 192 40 0 0 chr12 126812933 126812958 -16973497 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 554 163 26 200 chr12 126812958 126813016 -16973439 + MER5A DNA MER1_type 91 157 -32 1654 153 17 36 chr12 126813016 126813317 -16973138 - AluJo SINE Alu -17 295 1 2047 128 7 0 chr12 126813521 126813811 -16972644 - AluSx SINE Alu -8 304 13 212 154 0 0 chr12 126814258 126814297 -16972158 + GA-rich Low_complexity Low_complexity 1 39 0 1369 32 0 0 chr12 126814521 126814676 -16971779 + L1PA5 LINE L1 6000 6154 0 2349 99 0 3 chr12 126814709 126815011 -16971444 - AluSq SINE Alu -12 301 1 2430 93 0 0 chr12 126815013 126815313 -16971142 - AluSq SINE Alu -13 300 1 2083 143 0 0 chr12 126815313 126815606 -16970849 - AluJb SINE Alu -19 293 1 2389 88 3 0 chr12 126815914 126816210 -16970245 - AluSx SINE Alu -15 297 1 2242 114 13 0 chr12 126816968 126817274 -16969181 + AluSx SINE Alu 1 310 -2 195 338 25 12 chr12 126817329 126817409 -16969046 - MIR SINE MIR -162 100 20 1233 155 58 0 chr12 126817419 126817625 -16968830 - MER20 DNA MER1_type 0 219 2 252 184 0 0 chr12 126817639 126817688 -16968767 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 473 278 78 17 chr12 126819876 126820056 -16966399 + MIR SINE MIR 66 256 -6 201 74 0 0 chr12 126820831 126820858 -16965597 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr12 126822464 126822491 -16963964 + AT_rich Low_complexity Low_complexity 1 27 0 222 62 0 0 chr12 126823995 126824027 -16962428 + (TG)n Simple_repeat Simple_repeat 1 32 0 482 78 0 13 chr12 126824578 126824655 -16961800 + (CA)n Simple_repeat Simple_repeat 1 76 0 279 241 0 0 chr12 126826467 126826478 -16959977 + MER3 DNA MER1_type 37 47 -162 603 176 30 103 chr12 126826478 126826643 -16959812 - MER3 DNA MER1_type 0 209 57 1958 127 23 10 chr12 126828126 126828425 -16958030 - AluSx SINE Alu -9 303 1 929 94 0 0 chr12 126828707 126828824 -16957631 - FLAM_C SINE Alu -15 118 2 458 336 15 0 chr12 126828932 126829066 -16957389 + L2 LINE L2 3136 3271 -1 213 39 0 0 chr12 126829685 126829711 -16956744 + (T)n Simple_repeat Simple_repeat 1 26 0 2030 110 0 11 chr12 126829841 126830123 -16956332 - AluSg SINE Alu -31 279 1 290 116 0 0 chr12 126830154 126830197 -16956258 + LTR54 LTR ERV1 401 443 -67 298 238 0 16 chr12 126830607 126830670 -16955785 - L2 LINE L2 -4 3268 3207 2277 82 0 0 chr12 126830846 126831175 -16955280 + AluY SINE Alu 1 329 0 552 108 0 24 chr12 126831536 126831619 -16954836 + Alu SINE Alu 225 305 -7 346 231 0 0 chr12 126831883 126831948 -16954507 - L2 LINE L2 0 3313 3249 2231 61 0 0 chr12 126832757 126833020 -16953435 - AluY SINE Alu -4 307 45 414 318 93 23 chr12 126833175 126833433 -16953022 + L2 LINE L2 2808 3083 -189 2363 95 20 0 chr12 126833458 126833764 -16952691 - AluSx SINE Alu 0 312 1 24 67 0 0 chr12 126835288 126835333 -16951122 + AT_rich Low_complexity Low_complexity 1 45 0 249 360 73 0 chr12 126835717 126835867 -16950588 + L2 LINE L2 2325 2485 -829 3097 192 39 94 chr12 126836773 126837717 -16948738 - L1MA7 LINE L1 -20 6271 5380 2380 102 0 0 chr12 126837848 126838152 -16948303 - AluSx SINE Alu -3 309 6 2178 118 7 0 chr12 126838501 126838798 -16947657 + AluSq SINE Alu 1 299 -14 2029 118 38 3 chr12 126839061 126839349 -16947106 + AluSx SINE Alu 1 298 -14 383 310 76 7 chr12 126839773 126839826 -16946629 - MIR3 SINE MIR -6 202 154 1770 145 0 84 chr12 126839826 126839964 -16946491 + AluSx SINE Alu 1 149 -163 2105 129 0 7 chr12 126839964 126840274 -16946181 + AluSx SINE Alu 1 308 -4 1770 145 0 84 chr12 126840274 126840467 -16945988 + AluSx SINE Alu 149 304 -8 383 310 76 7 chr12 126840467 126840558 -16945897 - MIR3 SINE MIR -54 154 48 2048 132 0 3 chr12 126840695 126840990 -16945465 - AluSx SINE Alu -18 294 1 2047 164 61 25 chr12 126841232 126841422 -16945033 - MER4E LTR ERV1 -5 774 592 1717 117 80 0 chr12 126841422 126841732 -16944723 + AluJb SINE Alu 1 331 0 2047 164 61 25 chr12 126841732 126841935 -16944520 - MER4E LTR ERV1 -187 592 365 1281 159 67 108 chr12 126841935 126842102 -16944353 - AluSx SINE Alu 0 302 153 381 18 36 18 chr12 126842102 126842157 -16944298 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 1281 159 67 108 chr12 126842157 126842304 -16944151 - AluSx SINE Alu -149 153 1 278 75 0 0 chr12 126842309 126842349 -16944106 - FLAM SINE Alu -8 125 86 1950 117 35 14 chr12 126842661 126842794 -16943661 + AluSg SINE Alu 1 130 -180 2434 93 3 0 chr12 126842794 126843104 -16943351 + AluSp SINE Alu 1 311 -2 1950 117 35 14 chr12 126843104 126843260 -16943195 + AluSg SINE Alu 130 296 -14 352 248 57 78 chr12 126845629 126845770 -16940685 - HAL1b LINE L1 -702 646 509 1005 173 0 17 chr12 126846058 126846231 -16940224 + FRAM SINE Alu 1 169 -7 279 254 82 37 chr12 126846468 126846602 -16939853 + HAL1b LINE L1 97 236 -1112 926 255 85 17 chr12 126846664 126846802 -16939653 - L2 LINE L2 -4 3309 3182 2191 114 0 0 chr12 126846802 126847110 -16939345 + AluSg SINE Alu 1 308 -2 926 255 85 17 chr12 126847110 126847265 -16939190 - L2 LINE L2 -131 3182 2996 979 244 45 87 chr12 126847288 126847714 -16938741 + HAL1b LINE L1 304 711 -637 1678 184 40 3 chr12 126847837 126848136 -16938319 + AluJb SINE Alu 1 310 -2 1826 149 21 0 chr12 126848140 126848422 -16938033 + AluSx SINE Alu 1 288 -24 1446 243 143 27 chr12 126848555 126848829 -16937626 - L1MC4a LINE L1 -1879 5929 5688 2326 110 0 0 chr12 126848829 126849139 -16937316 + AluSg SINE Alu 1 310 0 1446 243 143 27 chr12 126849139 126849383 -16937072 - L1MC4a LINE L1 -2120 5688 5351 967 247 111 36 chr12 126849612 126849927 -16936528 + HAL1b LINE L1 701 1074 -274 1987 123 0 23 chr12 126849927 126849942 -16936513 - AluSx SINE Alu -17 295 281 300 53 0 0 chr12 126849942 126849980 -16936475 + (TG)n Simple_repeat Simple_repeat 1 38 0 1987 123 0 23 chr12 126849980 126850266 -16936189 - AluSx SINE Alu -31 281 1 967 247 111 36 chr12 126850266 126850484 -16935971 + HAL1b LINE L1 1074 1274 -74 2335 97 3 0 chr12 126850484 126850794 -16935661 - AluSp SINE Alu -2 311 1 3134 57 0 3 chr12 126851034 126851417 -16935038 - MER41A LTR ERV1 -88 466 85 23 33 0 0 chr12 126851447 126851477 -16934978 + AT_rich Low_complexity Low_complexity 1 30 0 911 201 20 34 chr12 126852410 126852614 -16933841 - MER3 DNA MER1_type 0 209 9 895 122 0 50 chr12 126852965 126853104 -16933351 + FLAM_C SINE Alu 2 133 0 834 142 13 7 chr12 126853156 126853311 -16933144 + L1PA15 LINE L1 6009 6164 -1 2289 99 7 3 chr12 126853515 126853819 -16932636 - AluSq SINE Alu -8 305 1 2093 137 27 0 chr12 126853942 126854242 -16932213 - AluSx SINE Alu -3 309 2 547 275 70 48 chr12 126854250 126854479 -16931976 - MIR SINE MIR -14 248 15 2258 115 0 0 chr12 126855494 126855789 -16930666 + AluSq SINE Alu 1 295 -18 626 314 34 30 chr12 126855989 126856253 -16930202 - L2 LINE L2 0 3313 3049 491 290 41 0 chr12 126856945 126857090 -16929365 - MIR SINE MIR -110 152 2 2296 100 7 0 chr12 126857578 126857878 -16928577 - AluSg SINE Alu -8 302 1 215 242 32 65 chr12 126858045 126858107 -16928348 - L2 LINE L2 -7 3265 3206 2186 126 0 19 chr12 126858366 126858683 -16927772 + AluSx SINE Alu 1 311 -1 222 128 0 0 chr12 126858834 126858873 -16927582 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr12 126859603 126859625 -16926830 + AT_rich Low_complexity Low_complexity 1 22 0 2188 118 0 0 chr12 126859633 126859929 -16926526 + AluSx SINE Alu 1 296 -16 577 230 189 0 chr12 126861056 126861204 -16925251 + MER5A DNA MER1_type 14 189 0 1023 206 0 0 chr12 126861363 126861528 -16924927 + AluJo SINE Alu 1 165 -147 611 271 218 14 chr12 126861731 126862011 -16924444 - L2 LINE L2 -1 3312 2976 189 0 0 0 chr12 126862242 126862263 -16924192 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1828 128 0 8 chr12 126863009 126863260 -16923195 + AluSx SINE Alu 1 249 -63 192 295 143 18 chr12 126863771 126863883 -16922572 - L2 LINE L2 -8 3305 3180 189 289 22 0 chr12 126864044 126864089 -16922366 - MIR SINE MIR -62 146 101 1997 89 60 7 chr12 126864104 126864385 -16922070 + AluSc SINE Alu 1 296 -13 729 294 104 7 chr12 126864385 126864654 -16921801 + L2 LINE L2 2222 2516 -798 882 213 19 111 chr12 126864662 126864782 -16921673 + L1ME1 LINE L1 5835 5964 -202 1965 123 7 0 chr12 126864782 126865066 -16921389 + AluSx SINE Alu 25 310 -2 882 213 19 111 chr12 126865066 126865306 -16921149 + L1ME1 LINE L1 5964 6162 -4 2409 81 0 3 chr12 126865408 126865706 -16920749 - AluSp SINE Alu -12 301 5 2073 109 25 0 chr12 126865757 126866042 -16920413 - AluY SINE Alu -19 292 1 427 279 235 5 chr12 126866396 126866600 -16919855 - MIR SINE MIR -7 255 5 2399 99 3 3 chr12 126867332 126867645 -16918810 + AluSp SINE Alu 1 313 0 495 164 59 79 chr12 126867673 126867825 -16918630 + L1MB1 LINE L1 5722 5870 -298 1999 119 0 23 chr12 126867929 126867944 -16918511 - AluSx SINE Alu -17 295 281 426 39 0 0 chr12 126867944 126867996 -16918459 + (TG)n Simple_repeat Simple_repeat 1 52 0 1999 119 0 23 chr12 126867996 126868282 -16918173 - AluSx SINE Alu -31 281 1 2370 87 3 0 chr12 126868500 126868810 -16917645 - AluSp SINE Alu -2 311 1 2220 113 3 3 chr12 126868960 126869261 -16917194 + AluSc SINE Alu 1 301 -8 195 258 86 62 chr12 126869265 126869393 -16917062 - L2 LINE L2 -296 2976 2846 650 237 52 94 chr12 126869567 126869875 -16916580 - MLT1J LTR MaLR -104 407 113 2183 122 0 0 chr12 126869952 126870238 -16916217 + AluSx SINE Alu 9 294 -18 410 322 68 7 chr12 126870375 126870466 -16915989 + MIR3 SINE MIR 48 153 -55 1785 145 0 84 chr12 126870466 126870659 -16915796 - AluSx SINE Alu -8 304 149 2118 129 0 7 chr12 126870659 126870969 -16915486 - AluSx SINE Alu -4 308 1 1785 145 0 84 chr12 126870969 126871107 -16915348 - AluSx SINE Alu -163 149 1 410 322 68 7 chr12 126871107 126871161 -16915294 + MIR3 SINE MIR 153 202 -6 2036 118 38 3 chr12 126871583 126871871 -16914584 - AluSx SINE Alu -14 298 1 2202 117 7 0 chr12 126872134 126872432 -16914023 - AluSq SINE Alu -13 300 1 2386 102 0 0 chr12 126872781 126873085 -16913370 + AluSx SINE Alu 6 309 -3 2683 202 36 91 chr12 126873216 126874160 -16912295 + L1MA7 LINE L1 5380 6271 -20 245 393 114 0 chr12 126874954 126875216 -16911239 - L2 LINE L2 -698 2616 2325 24 67 0 0 chr12 126875600 126875645 -16910810 + AT_rich Low_complexity Low_complexity 1 45 0 2386 92 20 0 chr12 126877170 126877476 -16908979 + AluSx SINE Alu 1 312 0 419 318 93 23 chr12 126877501 126877759 -16908696 - L2 LINE L2 -189 3083 2808 2230 61 0 0 chr12 126877914 126878178 -16908277 + AluY SINE Alu 45 308 -3 346 231 0 0 chr12 126878987 126879052 -16907403 + L2 LINE L2 3249 3313 0 514 108 0 24 chr12 126879316 126879399 -16907056 - Alu SINE Alu -7 302 222 2270 78 0 0 chr12 126879760 126880093 -16906362 - AluY SINE Alu 0 333 1 301 238 0 16 chr12 126880269 126880332 -16906123 + L2 LINE L2 3207 3268 -4 268 116 0 0 chr12 126880742 126880785 -16905670 - LTR54 LTR ERV1 -67 443 401 2032 110 0 11 chr12 126880815 126881097 -16905358 + AluSg SINE Alu 1 279 -31 213 39 0 0 chr12 126881227 126881253 -16905202 + (A)n Simple_repeat Simple_repeat 1 26 0 475 328 15 0 chr12 126881872 126882006 -16904449 - L2 LINE L2 -1 3271 3136 883 94 0 0 chr12 126882114 126882231 -16904224 + FLAM_C SINE Alu 2 118 -15 1994 126 23 10 chr12 126882513 126882815 -16903640 + AluSx SINE Alu 1 306 -6 531 176 30 103 chr12 126884298 126884463 -16901992 + MER3 DNA MER1_type 57 209 0 256 241 0 0 chr12 126884420 126884474 -16901981 - MER3 DNA MER1_type -119 90 37 * 374 92 0 15 chr12 126886287 126886352 -16900103 + (TG)n Simple_repeat Simple_repeat 1 64 0 240 59 0 0 chr12 126886902 126886936 -16899519 + (CA)n Simple_repeat Simple_repeat 1 34 0 31 0 0 0 chr12 126888425 126888456 -16897999 + AT_rich Low_complexity Low_complexity 1 31 0 2411 91 3 0 chr12 126889954 126890261 -16896194 - AluSp SINE Alu -5 308 1 981 166 57 5 chr12 126890283 126890494 -16895961 - L1ME LINE L1 -397 5769 5548 6807 43 7 0 chr12 126890505 126892037 -16894418 - L1PA6 LINE L1 0 6154 4584 2331 105 0 0 chr12 126892160 126892464 -16893991 + AluSq SINE Alu 1 304 -9 2175 97 10 3 chr12 126892629 126892927 -16893528 - AluSx SINE Alu -10 302 3 2429 96 0 3 chr12 126893016 126893328 -16893127 - AluSx SINE Alu -1 311 1 2930 57 0 3 chr12 126893568 126893951 -16892504 - MER41A LTR ERV1 -88 466 85 23 33 0 0 chr12 126893981 126894011 -16892444 + AT_rich Low_complexity Low_complexity 1 30 0 823 201 20 34 chr12 126894944 126895148 -16891307 - MER3 DNA MER1_type 0 209 9 837 122 0 50 chr12 126895499 126895638 -16890817 + FLAM_C SINE Alu 2 133 0 834 142 13 7 chr12 126895690 126895845 -16890610 + L1PA15 LINE L1 6009 6164 -1 2289 99 7 3 chr12 126896049 126896353 -16890102 - AluSq SINE Alu -8 305 1 2093 137 27 0 chr12 126896476 126896776 -16889679 - AluSx SINE Alu -3 309 2 547 275 70 48 chr12 126896784 126897013 -16889442 - MIR SINE MIR -14 248 15 2283 112 0 0 chr12 126898028 126898323 -16888132 + AluSq SINE Alu 1 295 -18 626 314 34 30 chr12 126898523 126898787 -16887668 - L2 LINE L2 0 3313 3049 491 290 41 0 chr12 126899479 126899624 -16886831 - MIR SINE MIR -110 152 2 2296 100 7 0 chr12 126900112 126900412 -16886043 - AluSg SINE Alu -8 302 1 215 242 32 65 chr12 126900579 126900641 -16885814 - L2 LINE L2 -7 3265 3206 2333 108 0 16 chr12 126900900 126901216 -16885239 + AluSx SINE Alu 1 311 -1 222 128 0 0 chr12 126901367 126901406 -16885049 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr12 126902135 126902157 -16884298 + AT_rich Low_complexity Low_complexity 1 22 0 2131 119 7 0 chr12 126902165 126902459 -16883996 + AluSx SINE Alu 1 296 -16 577 230 189 0 chr12 126903586 126903734 -16882721 + MER5A DNA MER1_type 14 189 0 1023 206 0 0 chr12 126903893 126904058 -16882397 + AluJo SINE Alu 1 165 -147 611 271 218 14 chr12 126904261 126904541 -16881914 - L2 LINE L2 -1 3312 2976 189 0 0 0 chr12 126904772 126904793 -16881662 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1841 123 0 8 chr12 126905539 126905790 -16880665 + AluSx SINE Alu 1 249 -63 192 295 143 18 chr12 126906301 126906413 -16880042 - L2 LINE L2 -8 3305 3180 189 289 22 0 chr12 126906574 126906619 -16879836 - MIR SINE MIR -62 146 101 2046 89 57 7 chr12 126906634 126906916 -16879539 + AluSc SINE Alu 1 296 -13 719 297 104 7 chr12 126906916 126907185 -16879270 + L2 LINE L2 2222 2516 -798 875 210 19 113 chr12 126907193 126907313 -16879142 + L1ME1 LINE L1 5835 5965 -201 1986 120 7 0 chr12 126907313 126907597 -16878858 + AluSx SINE Alu 25 310 -2 875 210 19 113 chr12 126907597 126907838 -16878617 + L1ME1 LINE L1 5965 6162 -4 2409 81 0 3 chr12 126907940 126908238 -16878217 - AluSp SINE Alu -12 301 5 2172 97 10 0 chr12 126908289 126908577 -16877878 - AluSg SINE Alu -19 291 1 427 279 235 5 chr12 126909309 126909513 -16876942 + MIR SINE MIR 5 255 -7 2101 102 25 0 chr12 126909867 126910151 -16876304 + AluY SINE Alu 1 291 -20 2130 120 0 13 chr12 126910514 126910815 -16875640 + AluSq SINE Alu 2 298 -15 1714 92 141 8 chr12 126910818 126911080 -16875375 + AluSg1 SINE Alu 1 297 -12 216 349 0 0 chr12 126911117 126911180 -16875275 - L2 LINE L2 -9 3263 3201 1280 120 6 6 chr12 126911192 126911375 -16875080 + AluSg/x SINE Alu 85 267 -45 289 385 29 17 chr12 126911715 126911889 -16874566 - L2 LINE L2 -471 2843 2668 2098 121 7 3 chr12 126911957 126912262 -16874193 - AluSq SINE Alu -7 306 1 2188 120 13 3 chr12 126912648 126912957 -16873498 - AluSx SINE Alu 0 312 1 2052 148 3 3 chr12 126913031 126913341 -16873114 - AluSx SINE Alu -2 310 1 1051 212 79 62 chr12 126913350 126913718 -16872737 - MLT1A2 LTR MaLR 0 374 1 21 71 0 0 chr12 126913747 126913789 -16872666 + AT_rich Low_complexity Low_complexity 1 42 0 493 339 52 10 chr12 126914272 126914464 -16871991 - MIR3 SINE MIR -7 201 2 1658 108 5 0 chr12 126914497 126914711 -16871744 + AluSg/x SINE Alu 74 288 -22 6041 89 15 5 chr12 126914748 126915687 -16870768 - L1PB1 LINE L1 -1 6150 5205 587 131 0 10 chr12 126915813 126915912 -16870543 + MER4A LTR ERV1 1 98 -566 1610 122 8 80 chr12 126915915 126916284 -16870171 + MER4A LTR ERV1 264 664 0 2375 92 0 0 chr12 126916322 126916625 -16869830 + AluSq SINE Alu 1 303 -10 1471 117 0 0 chr12 126916632 126916829 -16869626 + AluSx SINE Alu 1 197 -115 209 345 60 32 chr12 126917207 126917456 -16868999 + L2 LINE L2 2151 2406 -908 316 199 144 41 chr12 126917753 126917899 -16868556 - L1ME4a LINE L1 0 6121 5961 204 0 83 0 chr12 126918213 126918249 -16868206 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2114 116 0 0 chr12 126918249 126918525 -16867930 - AluSc SINE Alu -33 276 1 281 301 0 14 chr12 126918725 126918798 -16867657 + L2 LINE L2 3201 3272 0 225 273 76 0 chr12 126919127 126919193 -16867262 + LTR67 LTR ERVL 126 196 -361 431 184 69 0 chr12 126919363 126919450 -16867005 + LTR67 LTR ERVL 458 550 -7 1861 173 18 29 chr12 126919906 126920193 -16866262 + Charlie4a DNA MER1_type 63 345 -1616 1654 119 116 18 chr12 126920193 126920470 -16865985 - AluSg1 SINE Alu -3 306 3 1861 173 18 29 chr12 126920470 126920632 -16865823 + Charlie4a DNA MER1_type 345 507 -1 4760 181 19 7 chr12 126920637 126921612 -16864843 + L1PA15 LINE L1 4000 4985 -1161 2132 110 7 0 chr12 126921620 126921910 -16864545 + AluSx SINE Alu 7 298 -14 2283 97 0 7 chr12 126921914 126922222 -16864233 + AluSg SINE Alu 5 310 0 1180 146 0 0 chr12 126922222 126922387 -16864068 + AluSg/x SINE Alu 130 294 -16 5917 97 39 3 chr12 126922387 126922867 -16863588 + L1PA15 LINE L1 4980 5442 -723 2110 109 0 36 chr12 126922867 126923169 -16863286 + AluSx SINE Alu 11 301 -11 5917 97 39 3 chr12 126923169 126923835 -16862620 + L1PA15 LINE L1 5442 6162 -3 193 315 0 19 chr12 126923923 126923977 -16862478 - MER5A DNA MER1_type 0 189 137 2283 107 0 0 chr12 126924219 126924510 -16861945 + AluSg SINE Alu 3 293 -17 2225 108 0 7 chr12 126924957 126925253 -16861202 - AluSx SINE Alu -18 294 1 2289 78 0 3 chr12 126925261 126925556 -16860899 - AluY SINE Alu -17 294 1 1383 263 202 18 chr12 126925576 126926329 -16860126 + L2 LINE L2 2415 3311 -2 1802 148 17 28 chr12 126926542 126926833 -16859622 + AluJo SINE Alu 1 288 -24 1657 133 89 15 chr12 126927068 126927338 -16859117 + AluSg SINE Alu 2 291 -19 196 121 0 30 chr12 126927618 126927651 -16858804 + MIR3 SINE MIR 154 185 -23 2106 122 10 0 chr12 126928032 126928320 -16858135 - AluSx SINE Alu -21 291 1 301 326 26 72 chr12 126928412 126928605 -16857850 - L3 LINE CR1 -113 1464 1281 2458 77 3 3 chr12 126928766 126929077 -16857378 - AluY SINE Alu 0 311 1 2116 199 38 44 chr12 126929089 126929639 -16856816 + L1MB4 LINE L1 4490 5037 -1109 2422 88 0 0 chr12 126929639 126929936 -16856519 - AluSc SINE Alu -12 297 1 2116 199 38 44 chr12 126929936 126929994 -16856461 + L1MB4 LINE L1 5037 5094 -1052 * 3310 156 20 3 chr12 126929993 126930597 -16855858 + L1MA8 LINE L1 5424 6037 -254 615 106 26 9 chr12 126930606 126930719 -16855736 + L1MA7 LINE L1 6176 6290 -1 4033 147 40 64 chr12 126930752 126931751 -16854704 + L1MB4 LINE L1 5098 6075 -105 771 178 0 8 chr12 126931790 126931919 -16854536 + FLAM_C SINE Alu 2 129 -4 307 158 41 41 chr12 126932312 126932386 -16854069 + L1MC/D LINE L1 5694 5765 -415 243 61 0 0 chr12 126932718 126932751 -16853704 + (CA)n Simple_repeat Simple_repeat 2 34 0 1864 145 28 0 chr12 126932751 126933033 -16853422 - AluJb SINE Alu -22 290 1 289 65 32 81 chr12 126933299 126933361 -16853094 - Alu SINE Alu 0 300 242 480 304 133 53 chr12 126933381 126933515 -16852940 + L1ME4a LINE L1 4371 4493 -1653 2343 88 3 7 chr12 126933515 126933821 -16852634 + AluSx SINE Alu 1 305 -7 480 304 133 53 chr12 126933821 126933953 -16852502 + L1ME4a LINE L1 4493 4613 -1533 1361 192 47 41 chr12 126933953 126934204 -16852251 - MER58B DNA MER1_type -2079 341 86 2233 80 55 0 chr12 126934204 126934493 -16851962 - AluSx SINE Alu -5 307 3 1361 192 47 41 chr12 126934493 126934580 -16851875 - MER58B DNA MER1_type -2334 86 1 480 304 133 53 chr12 126934580 126935026 -16851429 + L1ME4a LINE L1 4613 5141 -1005 301 278 0 56 chr12 126935154 126935262 -16851193 + L1ME4a LINE L1 5864 5965 -156 831 210 145 13 chr12 126935286 126935596 -16850859 + HAL1 LINE L1 1872 2222 -285 403 234 43 58 chr12 126935625 126935813 -16850642 + HAL1 LINE L1 2292 2476 -31 5242 127 40 31 chr12 126935839 126936218 -16850237 - L1MA3 LINE L1 -116 6189 5815 2730 26 0 6 chr12 126936218 126936530 -16849925 - AluY SINE Alu -1 310 1 5242 127 40 31 chr12 126936530 126937158 -16849297 - L1MA3 LINE L1 -490 5815 5163 2025 144 3 3 chr12 126937158 126937464 -16848991 - AluSx SINE Alu -6 306 1 5242 127 40 31 chr12 126937464 126937987 -16848468 - L1MA3 LINE L1 -1142 5163 4646 422 253 116 14 chr12 126938686 126938832 -16847623 - MIR SINE MIR -4 258 98 2241 81 24 24 chr12 126939542 126939838 -16846617 - AluSx SINE Alu -16 296 1 258 356 89 0 chr12 126939839 126939940 -16846515 - L2 LINE L2 -12 3260 3151 312 339 163 44 chr12 126940382 126940609 -16845846 - L2 LINE L2 0 3272 3019 26 0 0 0 chr12 126940965 126940991 -16845464 + AT_rich Low_complexity Low_complexity 1 26 0 227 270 0 26 chr12 126942145 126942260 -16844195 + A-rich Low_complexity Low_complexity 1 112 0 236 292 197 13 chr12 126942759 126942847 -16843608 + MIR SINE MIR 36 107 -155 2264 126 0 3 chr12 126942847 126943156 -16843299 + AluSx SINE Alu 1 308 -4 236 292 197 13 chr12 126943156 126943216 -16843239 + MIR SINE MIR 107 212 -50 25 31 0 0 chr12 126943226 126943258 -16843197 + AT_rich Low_complexity Low_complexity 1 32 0 2106 125 7 0 chr12 126943312 126943607 -16842848 - AluSx SINE Alu -13 299 3 3071 228 40 9 chr12 126944310 126944460 -16841995 + L1MD2 LINE L1 2324 2468 -3678 189 0 0 0 chr12 126944460 126944481 -16841974 + (CA)n Simple_repeat Simple_repeat 2 22 0 3071 228 40 9 chr12 126944481 126945235 -16841220 + L1MD2 LINE L1 2468 3256 -2890 2204 152 95 57 chr12 126945256 126945338 -16841117 + L1MB1 LINE L1 5587 5664 -504 2445 83 3 3 chr12 126945338 126945651 -16840804 + AluSp SINE Alu 1 313 0 2204 152 95 57 chr12 126945651 126946078 -16840377 + L1MB1 LINE L1 5664 6073 -95 2116 106 0 30 chr12 126946078 126946381 -16840074 + AluSg SINE Alu 1 294 -16 2125 115 3 20 chr12 126946381 126946686 -16839769 + AluSq SINE Alu 1 300 -13 2204 152 95 57 chr12 126946686 126946732 -16839723 + L1MB1 LINE L1 6072 6165 -3 719 263 74 3 chr12 126946735 126947032 -16839423 + L1MD2 LINE L1 3260 3577 -2569 1982 125 17 7 chr12 126947032 126947327 -16839128 + AluSx SINE Alu 1 298 -14 4765 196 38 35 chr12 126947331 126948272 -16838183 + L1MD2 LINE L1 4382 5318 -1041 1891 140 41 0 chr12 126948272 126948564 -16837891 + AluSx SINE Alu 1 304 -8 4765 196 38 35 chr12 126948564 126949564 -16836891 + L1MD2 LINE L1 5318 6349 -10 273 284 155 0 chr12 126949784 126949900 -16836555 + L2 LINE L2 3180 3313 0 2471 78 0 3 chr12 126949988 126950297 -16836158 + AluSg SINE Alu 1 308 -2 340 341 116 28 chr12 126950320 126950712 -16835743 - L2 LINE L2 -201 3071 2633 1123 30 0 0 chr12 126950759 126950892 -16835563 - AluSp/q SINE Alu -3 310 178 1972 53 114 4 chr12 126951056 126951318 -16835137 - AluSc SINE Alu -18 291 1 535 146 219 22 chr12 126952083 126952261 -16834194 - L1MC5 LINE L1 -50 7911 7699 888 215 5 0 chr12 126952264 126952450 -16834005 + AluJb SINE Alu 120 306 -6 1980 116 0 33 chr12 126952477 126952780 -16833675 - AluSx SINE Alu -14 298 6 337 208 40 48 chr12 126952800 126952925 -16833530 - L1MC5 LINE L1 -293 7668 7545 26 74 0 0 chr12 126952962 126953016 -16833439 + AT_rich Low_complexity Low_complexity 1 54 0 1887 162 3 10 chr12 126953223 126953532 -16832923 + AluJo SINE Alu 1 307 -5 1763 181 0 3 chr12 126954138 126954442 -16832013 + AluJb SINE Alu 3 305 -7 189 0 0 0 chr12 126954442 126954463 -16831992 + (GA)n Simple_repeat Simple_repeat 2 22 0 2253 119 3 0 chr12 126954630 126954933 -16831522 + AluSx SINE Alu 1 304 -8 2442 68 7 0 chr12 126955215 126955507 -16830948 + AluY SINE Alu 1 294 -17 1623 175 3 48 chr12 126958489 126958798 -16827657 - AluJb SINE Alu -17 295 1 2524 84 0 0 chr12 126959924 126960235 -16826220 - AluY SINE Alu 0 311 1 261 122 0 0 chr12 126960332 126960381 -16826074 - AluSq SINE Alu 0 303 255 1881 117 4 15 chr12 126960398 126960672 -16825783 - AluSq SINE Alu -36 277 7 2350 179 46 15 chr12 126960733 126961258 -16825197 + L1MB7 LINE L1 5625 6165 -19 226 303 74 34 chr12 126961346 126961487 -16824968 + MIR SINE MIR 38 181 -62 290 332 62 43 chr12 126961791 126962002 -16824453 + MIR SINE MIR 48 262 0 2528 89 0 3 chr12 126962064 126962378 -16824077 + AluSq SINE Alu 1 313 0 2194 128 0 7 chr12 126962384 126962688 -16823767 + AluSx SINE Alu 1 302 -10 234 274 32 0 chr12 126962863 126962925 -16823530 + L2 LINE L2 3209 3272 0 2428 71 3 3 chr12 126963349 126963660 -16822795 - AluY SINE Alu 0 311 1 2128 96 0 4 chr12 126963734 126964006 -16822449 + AluSg SINE Alu 23 293 -17 192 152 0 0 chr12 126964008 126964041 -16822414 + (TA)n Simple_repeat Simple_repeat 2 34 0 2148 123 3 3 chr12 126964207 126964499 -16821956 - AluSx SINE Alu -20 292 1 745 223 7 0 chr12 126965579 126965727 -16820728 - Tigger7 DNA MER2_type 0 2491 2343 * 1413 182 0 16 chr12 126965722 126965969 -16820486 - Tigger7 DNA MER2_type -2143 344 102 527 110 0 0 chr12 126965972 126966045 -16820410 + AluJ/FLAM SINE Alu 2 74 -238 2512 82 31 22 chr12 126966049 126966404 -16820051 + THE1B LTR MaLR 7 364 0 767 175 0 42 chr12 126966433 126966576 -16819879 + FRAM SINE Alu 32 168 -8 598 193 18 9 chr12 126966576 126966685 -16819770 - Tigger7 DNA MER2_type -595 110 1 725 188 0 7 chr12 126967289 126967433 -16819022 - MIR SINE MIR -54 208 66 2154 140 0 0 chr12 126967781 126968089 -16818366 - AluSx SINE Alu -4 308 1 1836 147 3 33 chr12 126968120 126968419 -16818036 + AluJo SINE Alu 1 290 -22 2265 94 10 0 chr12 126971473 126971771 -16814684 + AluSx SINE Alu 1 301 -11 2545 59 0 3 chr12 126971775 126972078 -16814377 + AluY SINE Alu 1 302 -9 464 239 43 0 chr12 126972087 126972204 -16814251 - L2 LINE L2 -5 3308 3187 2440 92 0 3 chr12 126972942 126973248 -16813207 - AluSx SINE Alu -7 305 1 818 71 36 0 chr12 126973277 126973389 -16813066 - L1PA16 LINE L1 -9 6157 6042 701 140 14 44 chr12 126973393 126973541 -16812914 + L1MC/D LINE L1 5468 5604 -576 633 235 78 5 chr12 126973587 126973705 -16812750 - L2 LINE L2 0 3313 3205 1578 85 0 69 chr12 126973705 126973951 -16812504 + MER30 DNA MER1_type 2 230 0 633 235 78 5 chr12 126973951 126974036 -16812419 - L2 LINE L2 -108 3205 3095 2254 118 0 9 chr12 126974223 126974538 -16811917 + AluSx SINE Alu 1 312 0 25 0 0 0 chr12 126974813 126974838 -16811617 + AT_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr12 126975217 126975246 -16811209 + (TG)n Simple_repeat Simple_repeat 1 29 0 207 133 0 0 chr12 126975248 126975293 -16811162 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2104 83 13 60 chr12 126975329 126975652 -16810803 + AluSp SINE Alu 1 309 0 230 241 17 0 chr12 126975938 126975996 -16810459 + MIR SINE MIR 82 140 -68 1971 141 11 0 chr12 126976115 126976399 -16810056 + AluSx SINE Alu 1 287 -25 365 270 80 56 chr12 126976400 126976640 -16809815 - MIR SINE MIR -1 261 8 1619 127 7 85 chr12 126976721 126977028 -16809427 - AluJb SINE Alu -12 300 18 255 306 54 36 chr12 126977137 126977248 -16809207 - L2 LINE L2 0 3272 3160 2217 99 3 0 chr12 126977472 126977789 -16808666 + AluSx SINE Alu 1 318 0 1561 142 127 0 chr12 126978297 126978565 -16807890 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr12 126978887 126978922 -16807533 + AT_rich Low_complexity Low_complexity 1 35 0 2042 112 3 0 chr12 126979699 126979985 -16806470 - AluY SINE Alu -24 287 1 28 0 0 0 chr12 126982479 126982507 -16803948 + GC_rich Low_complexity Low_complexity 1 28 0 1893 91 0 0 chr12 126983973 126984225 -16802230 + AluSx SINE Alu 60 311 -1 1462 149 0 107 chr12 126984280 126984589 -16801866 + AluJb SINE Alu 14 289 -23 21 36 0 0 chr12 126985129 126985157 -16801298 + AT_rich Low_complexity Low_complexity 1 28 0 2207 99 3 3 chr12 126985270 126985563 -16800892 - AluSc SINE Alu -16 293 1 28 0 0 0 chr12 126988054 126988082 -16798373 + GC_rich Low_complexity Low_complexity 1 28 0 1851 103 4 0 chr12 126989548 126989800 -16796655 + AluSx SINE Alu 60 312 0 303 268 127 83 chr12 126992668 126992896 -16793559 + MIR SINE MIR 15 252 -10 198 325 12 0 chr12 126993219 126993302 -16793153 + L2 LINE L2 3187 3270 -2 1123 145 70 0 chr12 126993685 126993871 -16792584 - MER2 DNA MER2_type 0 345 147 659 201 79 12 chr12 126993871 126994035 -16792420 - FAM SINE Alu 0 175 1 2358 94 3 3 chr12 126994059 126994366 -16792089 - AluSp SINE Alu -6 307 1 2138 106 0 30 chr12 126994366 126994669 -16791786 - AluSg SINE Alu -16 294 1 2270 156 105 38 chr12 126994674 126995096 -16791359 - L1MB1 LINE L1 -43 6125 5662 2466 83 3 3 chr12 126995096 126995409 -16791046 - AluSp SINE Alu 0 313 1 2270 156 105 38 chr12 126995409 126995491 -16790964 - L1MB1 LINE L1 -506 5662 5587 3411 228 40 9 chr12 126995512 126996266 -16790189 - L1M4 LINE L1 -2890 3256 2468 189 0 0 0 chr12 126996266 126996287 -16790168 + (TG)n Simple_repeat Simple_repeat 2 22 0 3411 228 40 9 chr12 126996287 126996437 -16790018 - L1M4 LINE L1 -3678 2468 2324 1033 111 12 64 chr12 126996687 126996728 -16789727 - MER2 DNA MER2_type -182 163 121 2002 128 0 10 chr12 126996728 126997024 -16789431 + AluSx SINE Alu 1 293 -19 1033 111 12 64 chr12 126997024 126997154 -16789301 - MER2 DNA MER2_type -224 121 1 385 238 27 3 chr12 126997453 126997537 -16788918 + MER2 DNA MER2_type 6 89 -150 1347 150 68 0 chr12 126997862 126998082 -16788373 + MER46A DNA MER2_type 2 236 0 2273 94 7 0 chr12 126998287 126998575 -16787880 - AluSg SINE Alu -18 292 3 198 0 0 0 chr12 126998752 126998774 -16787681 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1247 119 0 0 chr12 126998786 126998946 -16787509 - AluSg/x SINE Alu -19 293 134 2126 124 0 13 chr12 126998946 126999261 -16787194 - AluSx SINE Alu -1 311 1 2065 129 0 26 chr12 126999619 126999922 -16786533 - AluSx SINE Alu -17 295 1 1659 193 0 17 chr12 126999946 127000241 -16786214 - AluJo SINE Alu -22 290 1 2332 90 0 7 chr12 127000241 127000542 -16785913 - AluSx SINE Alu -13 299 1 225 100 0 0 chr12 127000749 127000779 -16785676 + U6 snRNA snRNA 1 30 -77 297 264 36 102 chr12 127002090 127002125 -16784330 + MIR SINE MIR 2 38 -224 2371 75 3 3 chr12 127002125 127002420 -16784035 + AluY SINE Alu 1 295 -16 297 264 36 102 chr12 127002420 127002551 -16783904 + MIR SINE MIR 38 157 -105 2328 107 3 0 chr12 127002675 127002983 -16783472 - AluSq SINE Alu -4 309 1 847 176 154 6 chr12 127003161 127003343 -16783112 - MER3 DNA MER1_type 0 209 1 231 226 19 0 chr12 127004240 127004293 -16782162 - L2 LINE L2 0 3272 3219 191 336 118 0 chr12 127004904 127005014 -16781441 + MIR SINE MIR 59 181 -81 2280 90 3 17 chr12 127005129 127005430 -16781025 - AluSx SINE Alu -15 297 1 237 214 0 18 chr12 127005902 127005958 -16780497 + Charlie4 DNA MER1_type 1885 1939 -22 2129 125 0 0 chr12 127006441 127006730 -16779725 + AluSx SINE Alu 1 289 -23 482 123 0 49 chr12 127006809 127006890 -16779565 + Charlie3 DNA MER1_type 2636 2712 0 1499 119 5 18 chr12 127007087 127007305 -16779150 - AluSg/x SINE Alu -13 299 85 423 302 170 0 chr12 127008973 127009155 -16777300 + MIR SINE MIR 42 254 -8 2400 82 0 19 chr12 127011230 127011546 -16774909 - AluSx SINE Alu -2 310 1 187 176 0 39 chr12 127011546 127011597 -16774858 - MER5A DNA MER1_type -113 76 28 209 305 117 16 chr12 127011928 127012056 -16774399 - MIR3 SINE MIR -60 148 8 1664 187 7 3 chr12 127012270 127012559 -16773896 - AluJb SINE Alu -22 290 1 2606 58 0 3 chr12 127012791 127013099 -16773356 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 127013261 127013281 -16773174 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2040 96 48 4 chr12 127013281 127013553 -16772902 - AluSx SINE Alu -28 284 1 1790 139 14 11 chr12 127013841 127014128 -16772327 - AluJo SINE Alu -24 288 1 507 303 88 8 chr12 127015715 127015953 -16770502 - MIR SINE MIR 0 262 6 180 0 0 0 chr12 127016188 127016208 -16770247 + (T)n Simple_repeat Simple_repeat 1 20 0 2011 132 7 3 chr12 127016795 127017090 -16769365 + AluSx SINE Alu 1 296 -16 187 204 23 0 chr12 127017868 127017912 -16768543 + L3 LINE CR1 1530 1574 -3 2105 119 3 7 chr12 127020339 127020633 -16765822 - AluSc SINE Alu -16 293 1 329 313 9 9 chr12 127021464 127021579 -16764876 + MER103 DNA DNA 3 117 -49 2255 101 3 0 chr12 127021688 127021985 -16764470 - AluSx SINE Alu -13 299 2 1760 148 11 14 chr12 127024478 127024762 -16761693 - AluJo SINE Alu -16 296 14 2248 107 3 16 chr12 127025289 127025462 -16760993 - AluSx SINE Alu -7 305 136 2209 96 3 13 chr12 127025462 127025774 -16760681 - AluSc SINE Alu 0 309 1 2248 107 3 16 chr12 127025774 127025909 -16760546 - AluSx SINE Alu -176 136 1 2113 128 3 3 chr12 127025911 127026209 -16760246 - AluSx SINE Alu -14 298 1 2348 87 3 0 chr12 127026722 127027020 -16759435 - AluSg SINE Alu -11 299 1 349 306 20 27 chr12 127027662 127027809 -16758646 + L2 LINE L2 3166 3311 -2 2416 56 0 3 chr12 127028131 127028472 -16757983 - AluY SINE Alu 0 340 1 2322 103 0 16 chr12 127029064 127029376 -16757079 - AluSg SINE Alu -3 307 1 232 215 215 0 chr12 127029491 127029556 -16756899 + MIR SINE MIR 172 250 -12 400 284 92 0 chr12 127031000 127031141 -16755314 + MIR SINE MIR 94 247 -15 435 224 103 39 chr12 127035825 127035990 -16750465 - L1ME3A LINE L1 -1 6163 5986 434 246 100 23 chr12 127038085 127038215 -16748240 + MIR SINE MIR 2 141 -121 1069 179 42 5 chr12 127038321 127038533 -16747922 - MIR SINE MIR -42 220 1 325 265 10 29 chr12 127038885 127038987 -16747468 - MIR3 SINE MIR -48 160 61 297 228 18 0 chr12 127039079 127039136 -16747319 + MER81 DNA DNA 43 100 -14 247 211 113 14 chr12 127039372 127039443 -16747012 + MIR SINE MIR 47 124 -138 487 248 10 0 chr12 127039454 127039555 -16746900 - MER81 DNA DNA -12 102 1 294 298 26 9 chr12 127039555 127039669 -16746786 + MIR SINE MIR 119 234 -28 198 167 0 0 chr12 127039748 127039784 -16746671 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 991 129 0 0 chr12 127039788 127039927 -16746528 - FAM SINE Alu -27 158 20 223 230 14 68 chr12 127040149 127040223 -16746232 - L2 LINE L2 -3 3310 3241 2376 92 0 7 chr12 127040372 127040677 -16745778 - AluSg SINE Alu -7 303 1 353 303 11 32 chr12 127041090 127041275 -16745180 - MIR SINE MIR 0 262 82 598 216 65 33 chr12 127041481 127041634 -16744821 + MIR SINE MIR 51 208 -54 1759 156 48 0 chr12 127041701 127041990 -16744465 + AluJb SINE Alu 1 303 -9 297 257 133 18 chr12 127042270 127042383 -16744072 + L2 LINE L2 3147 3272 0 1578 240 112 74 chr12 127042459 127043225 -16743230 - HAL1 LINE L1 -36 2471 1677 1300 212 86 70 chr12 127043438 127043769 -16742686 - HAL1 LINE L1 -901 1606 1261 2220 197 65 33 chr12 127043769 127044291 -16742164 + MLT1F LTR MaLR 1 539 -3 1300 212 86 70 chr12 127044291 127044544 -16741911 - HAL1 LINE L1 -1246 1261 1013 657 266 279 18 chr12 127044562 127044942 -16741513 - HAL1 LINE L1 -2007 500 22 2387 98 0 3 chr12 127044947 127045253 -16741202 - AluSq SINE Alu -8 305 1 645 282 5 35 chr12 127046021 127046223 -16740232 - MER117 DNA MER1_type -1 196 1 212 234 31 0 chr12 127046442 127046506 -16739949 - L3 LINE CR1 -714 863 798 1425 144 19 0 chr12 127046525 127046733 -16739722 + MER58A DNA MER1_type 2 213 -11 225 345 53 0 chr12 127046821 127046934 -16739521 - L3 LINE CR1 -1050 527 409 340 224 13 147 chr12 127046935 127047167 -16739288 - MIR SINE MIR -13 249 49 28 48 0 0 chr12 127047260 127047302 -16739153 + AT_rich Low_complexity Low_complexity 1 42 0 2955 202 91 18 chr12 127047322 127048006 -16738449 - MER50 LTR ERV1 0 734 1 228 191 0 0 chr12 127048069 127048111 -16738344 - MIR SINE MIR -111 151 110 2958 150 78 6 chr12 127048311 127048823 -16737632 + MER44D DNA MER2_type 2 605 0 570 269 163 27 chr12 127049075 127049332 -16737123 + MER102b DNA MER1_type 1 292 -49 1937 147 0 13 chr12 127049539 127049838 -16736617 - AluSx SINE Alu -17 295 1 2442 43 0 17 chr12 127050202 127050501 -16735954 + AluY SINE Alu 1 294 -17 267 31 0 0 chr12 127050976 127051008 -16735447 + (CA)n Simple_repeat Simple_repeat 2 33 0 595 244 45 20 chr12 127051396 127051597 -16734858 - LTR16C LTR ERVL -3 488 283 242 208 62 0 chr12 127051615 127051663 -16734792 - MER7A DNA MER2_type 0 336 286 1944 137 18 7 chr12 127051663 127051948 -16734507 + AluSx SINE Alu 1 288 -24 1514 181 83 3 chr12 127051961 127052249 -16734206 - MER7A DNA MER2_type -36 310 2 1391 137 82 51 chr12 127052266 127052293 -16734162 - MER33 DNA MER1_type -2283 302 277 2476 91 0 0 chr12 127052293 127052601 -16733854 - AluSq SINE Alu -5 308 1 1391 137 82 51 chr12 127052601 127052866 -16733589 - MER33 DNA MER1_type -2308 277 1 289 324 229 0 chr12 127052866 127053034 -16733421 - LTR16C LTR ERVL -196 295 89 2253 95 41 52 chr12 127053075 127053443 -16733012 - THE1B LTR MaLR 0 364 1 1826 157 10 26 chr12 127053494 127053800 -16732655 - AluSq SINE Alu -12 301 1 465 228 16 47 chr12 127053897 127054024 -16732431 - MER91C DNA MER1_type -1 139 17 323 316 52 7 chr12 127054665 127054801 -16731654 - MIR3 SINE MIR -1 207 66 251 267 233 0 chr12 127054809 127054895 -16731560 + L2 LINE L2 3163 3268 -4 520 234 7 91 chr12 127055021 127055175 -16731280 + MLT1K LTR MaLR 125 265 -323 549 248 53 58 chr12 127055193 127055399 -16731056 + MLT1K LTR MaLR 367 571 -17 1115 302 58 0 chr12 127055491 127055868 -16730587 + MLT1L LTR MaLR 90 488 -127 1931 171 0 0 chr12 127056045 127056349 -16730106 + AluJb SINE Alu 1 304 -8 1046 148 22 91 chr12 127056350 127056580 -16729875 - MER20 DNA MER1_type -4 215 2 1649 201 62 5 chr12 127056632 127057078 -16729377 + MLT2B1 LTR ERVL 1 515 0 3677 172 26 16 chr12 127057128 127057335 -16729120 + L1MB4 LINE L1 5486 5689 -491 2261 119 0 10 chr12 127057335 127057638 -16728817 - AluSx SINE Alu -11 301 2 3677 172 26 16 chr12 127057638 127058116 -16728339 + L1MB4 LINE L1 5689 6178 -2 2234 152 22 8 chr12 127058298 127058653 -16727802 + THE1B LTR MaLR 5 364 0 367 284 37 0 chr12 127058658 127058792 -16727663 - MIR SINE MIR -14 248 110 200 350 0 0 chr12 127059348 127059408 -16727047 + (TG)n Simple_repeat Simple_repeat 2 61 0 384 284 26 26 chr12 127060231 127060386 -16726069 - MIR SINE MIR -55 207 53 811 159 8 0 chr12 127060600 127060732 -16725723 + FLAM_C SINE Alu 1 133 0 350 200 0 100 chr12 127060740 127060783 -16725672 - MER5A DNA MER1_type -80 109 80 2047 141 7 0 chr12 127060783 127061081 -16725374 - AluSx SINE Alu -12 300 1 350 200 0 100 chr12 127061081 127061137 -16725318 - MER5A DNA MER1_type -109 80 20 235 313 104 31 chr12 127061296 127061392 -16725063 - L2 LINE L2 -51 3221 3119 257 322 63 85 chr12 127061480 127061878 -16724577 - L2 LINE L2 -926 2388 2000 1540 212 38 91 chr12 127061878 127062111 -16724344 + L1MC4 LINE L1 7380 7573 -469 2368 103 0 25 chr12 127062111 127062432 -16724023 + AluSq SINE Alu 1 313 0 1540 212 38 91 chr12 127062432 127062703 -16723752 + L1MC4 LINE L1 7573 7857 -185 697 138 18 0 chr12 127062729 127062838 -16723617 + MLT1A1 LTR MaLR 1 111 -254 784 170 22 7 chr12 127062882 127063017 -16723438 + MLT1A1 LTR MaLR 226 362 -3 494 222 74 0 chr12 127063025 127063184 -16723271 + L1MC4 LINE L1 7880 7995 0 1746 171 38 0 chr12 127063251 127063538 -16722917 + AluJo SINE Alu 1 298 -14 295 284 131 22 chr12 127063686 127063869 -16722586 - L2 LINE L2 -1402 1912 1710 933 144 131 0 chr12 127064293 127064453 -16722002 - MSTA LTR MaLR 0 428 248 * 1422 119 43 0 chr12 127064451 127064661 -16721794 - MLT1B LTR MaLR -147 243 25 489 284 25 38 chr12 127064756 127064995 -16721460 + L2 LINE L2 3078 3313 0 214 302 0 0 chr12 127065669 127065722 -16720733 - L2 LINE L2 -1 3271 3219 705 279 55 118 chr12 127065847 127066434 -16720021 + LTR67 LTR ERVL 1 550 -7 4360 72 12 5 chr12 127066611 127067184 -16719271 - L1PA10 LINE L1 -11 6157 5581 26 93 0 0 chr12 127067437 127067512 -16718943 + AT_rich Low_complexity Low_complexity 1 75 0 660 264 151 14 chr12 127067514 127067798 -16718657 - L1MC4 LINE L1 -31 8011 7689 353 330 60 78 chr12 127068686 127069200 -16717255 + L2 LINE L2 2703 3220 -52 202 293 0 0 chr12 127069237 127069295 -16717160 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 443 231 88 54 chr12 127070107 127070254 -16716201 - MER102a DNA MER1_type -1 329 178 2379 109 0 0 chr12 127070362 127070664 -16715791 + AluSx SINE Alu 1 302 -10 338 190 250 10 chr12 127070743 127070843 -16715612 + MLT1I LTR MaLR 279 402 -7 276 205 99 112 chr12 127070859 127071020 -16715435 - MER102a DNA MER1_type -171 159 1 234 301 36 48 chr12 127071022 127071105 -16715350 - L2 LINE L2 -54 3218 3137 2341 94 17 0 chr12 127071133 127071430 -16715025 + AluSx SINE Alu 3 304 -8 193 367 11 0 chr12 127071724 127071814 -16714641 - L2 LINE L2 -512 2802 2712 184 294 126 42 chr12 127071855 127071998 -16714457 - L2 LINE L2 0 3313 3159 243 185 0 56 chr12 127072033 127072087 -16714368 - L2 LINE L2 0 3313 3263 183 42 0 0 chr12 127072171 127072195 -16714260 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 306 175 0 0 chr12 127072195 127072248 -16714207 + CT-rich Low_complexity Low_complexity 9 64 0 1942 130 50 0 chr12 127072355 127072632 -16713823 - AluSx SINE Alu -21 291 1 213 272 184 10 chr12 127072632 127072735 -16713720 + MIR SINE MIR 122 242 -20 204 135 0 0 chr12 127072840 127072877 -16713578 + (A)n Simple_repeat Simple_repeat 1 37 0 1900 161 0 10 chr12 127072877 127073182 -16713273 + AluSx SINE Alu 1 302 -10 234 274 32 0 chr12 127073357 127073419 -16713036 + L2 LINE L2 3209 3272 0 2474 71 3 0 chr12 127073844 127074154 -16712301 - AluY SINE Alu 0 311 1 332 135 0 0 chr12 127074228 127074280 -16712175 + AluJ/FLAM SINE Alu 23 74 -228 989 184 36 10 chr12 127074284 127074480 -16711975 + THE1B LTR MaLR 7 207 -157 373 312 0 0 chr12 127124498 127124607 -16661848 + G-rich Low_complexity Low_complexity 1 109 0 831 279 178 31 chr12 127125025 127125481 -16660974 - MLT1L LTR MaLR -76 539 17 237 257 28 111 chr12 127125779 127125869 -16660586 - MIR SINE MIR -129 133 58 2288 109 6 3 chr12 127125869 127126180 -16660275 - AluSx SINE Alu 0 312 1 237 257 28 111 chr12 127126180 127126233 -16660222 - MIR SINE MIR -204 58 2 270 0 0 0 chr12 127126454 127126484 -16659971 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2148 101 10 0 chr12 127126484 127126766 -16659689 - AluSx SINE Alu -27 285 1 24 0 0 0 chr12 127126771 127126795 -16659660 + AT_rich Low_complexity Low_complexity 1 24 0 415 266 84 13 chr12 127127492 127127646 -16658809 + MER20B DNA MER1_type 10 174 -609 6322 51 4 0 chr12 127128418 127129147 -16657308 + L1PA4 LINE L1 5420 6151 -4 1027 160 46 0 chr12 127129495 127129670 -16656785 - L1MB5 LINE L1 -257 5917 5735 862 288 57 0 chr12 127129740 127129969 -16656486 - MIR SINE MIR 0 262 21 1143 230 43 54 chr12 127129970 127130380 -16656075 - L1ME1 LINE L1 -2 6164 5763 2361 81 10 0 chr12 127130380 127130677 -16655778 - AluSp SINE Alu -13 300 1 1254 278 43 30 chr12 127130699 127131304 -16655151 - L1ME3A LINE L1 -5 6099 5503 1705 184 0 0 chr12 127131304 127131586 -16654869 + AluJo SINE Alu 2 283 -29 204 97 0 0 chr12 127131589 127131620 -16654835 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1254 278 43 30 chr12 127131620 127131900 -16654555 - L1ME3A LINE L1 -602 5502 5122 803 117 31 0 chr12 127131909 127132037 -16654418 - L1MB4 LINE L1 0 6180 6049 1236 20 0 7 chr12 127132037 127132183 -16654272 - AluY SINE Alu -13 298 154 1484 174 12 0 chr12 127132204 127132457 -16653998 - L1MB5 LINE L1 -108 6066 5811 873 181 16 52 chr12 127132466 127132659 -16653796 + L1M3 LINE L1 5409 5594 -586 1581 252 93 21 chr12 127132660 127133319 -16653136 - L1ME3A LINE L1 -951 5129 4424 537 231 151 0 chr12 127133320 127133545 -16652910 - LTR50 LTR ERVL -2 793 535 2863 239 144 37 chr12 127133717 127133867 -16652588 - L1ME3A LINE L1 -2028 4052 3920 2460 67 3 10 chr12 127133867 127134180 -16652275 + AluY SINE Alu 1 311 0 2863 239 144 37 chr12 127134180 127135228 -16651227 - L1ME3A LINE L1 -2160 3920 2725 228 86 0 0 chr12 127135239 127135274 -16651181 + (TATG)n Simple_repeat Simple_repeat 2 36 0 959 146 13 7 chr12 127135279 127135430 -16651025 - FRAM SINE Alu -25 151 1 445 287 15 0 chr12 127135430 127135566 -16650889 - L1ME3A LINE L1 -3352 2728 2591 266 231 11 22 chr12 127135616 127135710 -16650745 - L1ME3A LINE L1 -4781 1220 841 1228 270 106 46 chr12 127135711 127137566 -16648889 - L1MEc LINE L1 -3477 2738 791 3583 111 22 10 chr12 127138039 127138544 -16647911 + MER9 LTR ERVK 1 511 0 230 313 10 50 chr12 127139267 127139366 -16647089 + L2 LINE L2 3182 3276 -37 3927 138 3 2 chr12 127139434 127140006 -16646449 - L1PA16 LINE L1 -10 6156 5584 416 255 128 13 chr12 127140077 127140226 -16646229 - MIR SINE MIR -51 211 46 1812 197 19 33 chr12 127140358 127140723 -16645732 - MLT1A1 LTR MaLR 0 365 6 456 239 93 78 chr12 127140964 127141169 -16645286 - MIR SINE MIR -3 259 52 617 232 95 24 chr12 127142042 127142210 -16644245 - MLT1J2 LTR MaLR -2 448 269 406 156 34 28 chr12 127142677 127142856 -16643599 + (TG)n Simple_repeat Simple_repeat 1 180 0 447 136 40 28 chr12 127142873 127143049 -16643406 + (TG)n Simple_repeat Simple_repeat 2 179 0 318 159 28 44 chr12 127143076 127143258 -16643197 + (TG)n Simple_repeat Simple_repeat 2 180 0 371 110 46 18 chr12 127143326 127143435 -16643020 + (TG)n Simple_repeat Simple_repeat 1 112 0 272 156 50 21 chr12 127143467 127143608 -16642847 + (TG)n Simple_repeat Simple_repeat 2 146 0 332 132 19 0 chr12 127143624 127143677 -16642778 + LTR40a LTR ERVL 466 519 0 396 189 28 49 chr12 127143704 127143842 -16642613 - MLT1J2 LTR MaLR -250 196 66 432 229 93 87 chr12 127144036 127144091 -16642364 - MIR SINE MIR -46 216 163 2176 100 0 4 chr12 127144091 127144417 -16642038 - AluSx SINE Alu 0 326 2 432 229 93 87 chr12 127144417 127144543 -16641912 - MIR SINE MIR -99 163 33 1122 165 85 10 chr12 127144745 127144945 -16641510 + MER20 DNA MER1_type 1 215 -4 23 33 0 0 chr12 127145382 127145412 -16641043 + AT_rich Low_complexity Low_complexity 1 30 0 810 176 29 0 chr12 127145415 127145551 -16640904 - MER58B DNA MER1_type 0 341 202 1413 40 114 0 chr12 127146296 127146452 -16640003 - L1PA10 LINE L1 0 6168 5988 204 40 0 0 chr12 127146452 127146477 -16639978 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1413 40 114 0 chr12 127146477 127146496 -16639959 - L1PA10 LINE L1 -180 5988 5973 277 296 139 28 chr12 127146762 127146870 -16639585 - L2 LINE L2 -10 3262 3143 922 289 115 63 chr12 127147099 127147502 -16638953 - MLT1K LTR MaLR 0 588 147 2508 132 12 47 chr12 127147502 127147835 -16638620 + MLT1B LTR MaLR 2 320 -70 1918 135 0 0 chr12 127147835 127148095 -16638360 + AluSx SINE Alu 36 295 -17 2508 132 12 47 chr12 127148095 127148164 -16638291 + MLT1B LTR MaLR 320 390 0 922 289 115 63 chr12 127148164 127148318 -16638137 - MLT1K LTR MaLR -441 147 2 794 279 88 4 chr12 127148335 127148561 -16637894 - MIR SINE MIR -10 252 8 3264 116 34 82 chr12 127149346 127149626 -16636829 - MER41B LTR ERV1 0 635 398 1722 84 0 0 chr12 127149626 127149839 -16636616 - AluSg SINE Alu -45 265 53 3264 116 34 82 chr12 127149839 127150171 -16636284 - MER41B LTR ERV1 -237 398 52 1620 169 0 8 chr12 127150189 127150455 -16636000 + AluJo SINE Alu 27 290 -22 2305 117 0 0 chr12 127150458 127150766 -16635689 + AluSq SINE Alu 1 308 -5 1731 129 38 8 chr12 127150868 127151131 -16635324 - L1PA8A LINE L1 0 6131 5861 29 47 0 0 chr12 127152671 127152714 -16633741 + AT_rich Low_complexity Low_complexity 1 43 0 546 352 122 9 chr12 127153237 127153467 -16632988 + MLT1K LTR MaLR 96 351 -237 398 258 97 24 chr12 127153530 127153654 -16632801 + MLT1K LTR MaLR 456 588 0 893 239 178 58 chr12 127154162 127154628 -16631827 + MLT1H1 LTR MaLR 9 538 -4 668 281 74 60 chr12 127154616 127154983 -16631472 - MLT1L LTR MaLR -32 583 212 * 193 57 57 0 chr12 127155373 127155408 -16631047 + CT-rich Low_complexity Low_complexity 2 38 0 1634 158 25 35 chr12 127155412 127155697 -16630758 - AluJo SINE Alu -30 282 1 751 281 5 10 chr12 127156134 127156337 -16630118 + MIR SINE MIR 46 247 -15 2214 88 3 3 chr12 127156367 127156678 -16629777 + AluSx SINE Alu 1 311 0 256 317 22 100 chr12 127157034 127157214 -16629241 + L2 LINE L2 3037 3202 -70 * 579 272 56 52 chr12 127157202 127157415 -16629040 - L2 LINE L2 0 3313 3100 985 302 75 10 chr12 127157422 127157833 -16628622 + LTR16A LTR ERVL 8 445 -5 844 265 35 16 chr12 127157869 127158126 -16628329 - L2 LINE L2 -229 3084 2823 190 206 0 0 chr12 127158171 127158205 -16628250 + L2 LINE L2 3271 3304 -9 * 320 184 78 48 chr12 127158196 127158299 -16628156 + MIR SINE MIR 32 137 -125 417 159 45 11 chr12 127159072 127159160 -16627295 - MIR SINE MIR -115 147 57 351 323 30 6 chr12 127159205 127159372 -16627083 - MIR SINE MIR -48 214 44 594 140 0 110 chr12 127159409 127159545 -16626910 + MIR SINE MIR 96 216 -46 197 246 18 0 chr12 127159648 127159705 -16626750 - L2 LINE L2 -1 3312 3255 182 286 29 14 chr12 127159676 127159746 -16626709 - MIR SINE MIR -24 238 168 * 401 257 0 9 chr12 127160033 127160138 -16626317 + HsTC2 DNA Tc2 1 104 -1794 1929 166 10 0 chr12 127160203 127160510 -16625945 + AluSx SINE Alu 1 310 -2 1411 190 22 58 chr12 127160531 127160842 -16625613 - AluJo SINE Alu -12 300 1 914 231 19 30 chr12 127160847 127161111 -16625344 + HsTC2 DNA Tc2 1542 1802 -96 1365 154 63 20 chr12 127161111 127161389 -16625066 + L1MB7 LINE L1 5634 5911 -243 2259 165 89 38 chr12 127161389 127161863 -16624592 + Ricksha DNA DNA 108 605 -2641 1261 164 31 13 chr12 127161852 127162251 -16624204 + Ricksha DNA DNA 2401 3233 -13 * 1316 200 3 48 chr12 127162262 127162577 -16623878 + L1MB8 LINE L1 5872 6172 -6 297 240 190 0 chr12 127163098 127163219 -16623236 + L1ME LINE L1 5518 5661 -460 397 294 98 12 chr12 127163401 127163564 -16622891 + MIR SINE MIR 86 262 0 251 88 0 0 chr12 127164052 127164086 -16622369 + AluSx SINE Alu 1 34 -268 6022 120 214 92 chr12 127164089 127165601 -16620854 - pTR5 LTR ERV1 0 2438 743 2093 69 10 59 chr12 127165601 127165704 -16620751 + AluSx SINE Alu 31 137 -175 1832 92 0 0 chr12 127165704 127165932 -16620523 + AluSp SINE Alu 1 228 -85 2093 69 10 59 chr12 127165932 127166116 -16620339 + AluSx SINE Alu 137 304 -8 1678 241 53 2 chr12 127166625 127167056 -16619399 - L1ME3 LINE L1 -55 6107 5655 513 326 87 11 chr12 127167056 127167146 -16619309 + L2 LINE L2 2592 2674 -639 1016 179 0 0 chr12 127167146 127167302 -16619153 - FRAM SINE Alu -10 156 1 513 326 87 11 chr12 127167302 127167658 -16618797 + L2 LINE L2 2674 3073 -240 1994 119 82 20 chr12 127167828 127168181 -16618274 - THE1C LTR MaLR 0 375 1 293 333 56 7 chr12 127168207 127168351 -16618104 + MIR SINE MIR 1 151 -111 300 254 37 82 chr12 127168416 127168550 -16617905 - MIR SINE MIR -111 151 24 2172 120 16 7 chr12 127168760 127169068 -16617387 - AluSq SINE Alu -2 311 1 532 247 86 5 chr12 127169362 127169548 -16616907 - L2 LINE L2 -4 3309 3109 234 304 36 27 chr12 127169740 127169852 -16616603 - MIR SINE MIR -60 148 36 257 229 71 14 chr12 127170394 127170464 -16615991 - MIR SINE MIR -119 143 70 2322 87 0 7 chr12 127170491 127170790 -16615665 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 127171144 127171174 -16615281 + AT_rich Low_complexity Low_complexity 1 30 0 679 212 164 21 chr12 127171188 127171377 -16615078 + MER20 DNA MER1_type 1 216 -3 1279 268 48 48 chr12 127171378 127171965 -16614490 - HAL1 LINE L1 -30 2477 1891 305 329 26 7 chr12 127171988 127172143 -16614312 - MIR SINE MIR -71 191 34 2015 156 0 3 chr12 127172211 127172519 -16613936 + AluSx SINE Alu 1 307 -5 254 265 24 12 chr12 127172564 127172647 -16613808 + L2 LINE L2 3189 3272 0 326 250 50 0 chr12 127172731 127172811 -16613644 + MIR SINE MIR 93 176 -86 617 213 7 20 chr12 127173197 127173347 -16613108 - MIR SINE MIR -1 261 114 397 228 12 12 chr12 127173934 127174101 -16612354 + (CATA)n Simple_repeat Simple_repeat 4 170 0 189 178 0 0 chr12 127174142 127174187 -16612268 + (CA)n Simple_repeat Simple_repeat 2 46 0 452 247 3 0 chr12 127174212 127174511 -16611944 + (CA)n Simple_repeat Simple_repeat 1 300 0 315 276 0 11 chr12 127174535 127174622 -16611833 + L2 LINE L2 3185 3270 -2 325 271 94 21 chr12 127175068 127175164 -16611291 - MIR SINE MIR -86 122 20 360 336 47 17 chr12 127175548 127175783 -16610672 + L2 LINE L2 2387 2628 -686 458 271 152 32 chr12 127175869 127176059 -16610396 - MLT1I LTR MaLR 0 450 284 2028 162 0 0 chr12 127176059 127176356 -16610099 + AluJo SINE Alu 4 300 -12 458 271 152 32 chr12 127176356 127176496 -16609959 - MLT1I LTR MaLR -166 284 69 330 265 19 15 chr12 127176718 127176979 -16609476 + GA-rich Low_complexity Low_complexity 1 262 0 204 158 0 0 chr12 127177218 127177256 -16609199 + GA-rich Low_complexity Low_complexity 1 38 0 191 35 0 35 chr12 127177393 127177422 -16609033 + (CAGGG)n Simple_repeat Simple_repeat 1 28 0 337 250 130 0 chr12 127177691 127177799 -16608656 + MER5C DNA MER1_type 3 124 -200 187 189 0 0 chr12 127177904 127177941 -16608514 + MER5C DNA MER1_type 288 324 0 * 520 327 55 45 chr12 127177941 127178139 -16608316 + L2 LINE L2 2618 2813 -459 2992 149 37 12 chr12 127178139 127178656 -16607799 - LTR26B LTR ERV1 -1 530 1 520 327 55 45 chr12 127178656 127179087 -16607368 + L2 LINE L2 2813 3259 -13 192 77 0 0 chr12 127179087 127179113 -16607342 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 30 27 0 0 chr12 127179579 127179616 -16606839 + AT_rich Low_complexity Low_complexity 1 37 0 702 327 0 0 chr12 127179685 127179890 -16606565 + MIR SINE MIR 14 218 -44 522 259 78 36 chr12 127180049 127180215 -16606240 - MER96 DNA MER1_type -2 173 1 486 0 0 0 chr12 127180310 127180364 -16606091 + (TA)n Simple_repeat Simple_repeat 1 54 0 2208 108 3 3 chr12 127180364 127180661 -16605794 + AluSx SINE Alu 2 298 -14 204 255 0 0 chr12 127180661 127180708 -16605747 + (TA)n Simple_repeat Simple_repeat 1 47 0 228 143 48 0 chr12 127180708 127180750 -16605705 - L1MC4 LINE L1 -1337 6705 6662 186 143 0 0 chr12 127180751 127180786 -16605669 + (CA)n Simple_repeat Simple_repeat 1 35 0 550 277 72 63 chr12 127181070 127181566 -16604889 + L1MEd LINE L1 774 1312 -4914 2259 123 0 7 chr12 127181566 127181876 -16604579 + AluSx SINE Alu 1 308 -4 550 277 72 63 chr12 127181876 127181930 -16604525 + L1MEd LINE L1 1312 1364 -4862 616 302 144 10 chr12 127182239 127182544 -16603911 - L2 LINE L2 -1 3312 2967 21 0 0 0 chr12 127182726 127182747 -16603708 + AT_rich Low_complexity Low_complexity 1 21 0 2513 65 0 0 chr12 127182749 127183056 -16603399 + AluY SINE Alu 1 307 -4 525 289 27 0 chr12 127183593 127183779 -16602676 + MIR SINE MIR 56 241 -21 545 283 11 91 chr12 127184395 127184556 -16601899 - MIR SINE MIR -1 261 128 2235 110 3 25 chr12 127184556 127184875 -16601580 + AluSx SINE Alu 1 312 0 545 283 11 91 chr12 127184875 127184978 -16601477 - MIR SINE MIR -134 128 18 2293 139 39 34 chr12 127185146 127185691 -16600764 + MLT2A2 LTR ERVL 1 554 0 317 226 36 24 chr12 127185750 127185834 -16600621 - MER103 DNA DNA -45 121 37 21 0 0 0 chr12 127185835 127185856 -16600599 + AT_rich Low_complexity Low_complexity 1 21 0 827 288 133 13 chr12 127186716 127187101 -16599354 + MLT1J2 LTR MaLR 1 431 -19 435 324 12 73 chr12 127187175 127187311 -16599144 + MIR SINE MIR 20 134 -128 2278 97 37 0 chr12 127187311 127187610 -16598845 + AluSx SINE Alu 3 312 0 435 324 12 73 chr12 127187610 127187732 -16598723 + MIR SINE MIR 134 262 0 379 216 67 22 chr12 127187926 127188060 -16598395 + L2 LINE L2 3174 3313 0 936 257 77 28 chr12 127188226 127188549 -16597906 + MER102b DNA MER1_type 2 340 -1 1775 201 82 16 chr12 127188744 127189182 -16597273 + MLT1C LTR MaLR 1 467 0 23 86 0 0 chr12 127189184 127189242 -16597213 + AT_rich Low_complexity Low_complexity 1 58 0 2366 79 7 0 chr12 127189246 127189537 -16596918 + AluSp SINE Alu 1 293 -20 180 261 0 0 chr12 127189563 127189609 -16596846 - L2 LINE L2 -229 3043 2998 553 246 88 0 chr12 127189696 127189867 -16596588 + MIR SINE MIR 77 262 0 754 249 78 15 chr12 127189962 127190167 -16596288 + LTR33 LTR ERVL 1 218 -303 699 207 73 12 chr12 127190182 127190346 -16596109 + MER74A LTR ERVL 1 174 -384 1946 167 52 54 chr12 127190437 127190790 -16595665 + MER74A LTR ERVL 135 488 -70 2345 85 3 3 chr12 127190790 127191084 -16595371 - AluSc SINE Alu -15 294 1 1946 167 52 54 chr12 127191084 127191155 -16595300 + MER74A LTR ERVL 488 558 0 497 264 229 31 chr12 127191155 127191413 -16595042 + LTR33 LTR ERVL 211 519 -2 277 281 67 11 chr12 127191590 127191679 -16594776 + L2 LINE L2 3178 3271 -1 253 203 0 51 chr12 127191766 127191825 -16594630 + L2 LINE L2 3217 3272 0 263 288 255 24 chr12 127192762 127192974 -16593481 + MIR SINE MIR 2 262 0 1401 234 82 65 chr12 127193170 127193674 -16592781 - LTR33A LTR ERVL -17 506 18 454 206 175 6 chr12 127193704 127193864 -16592591 - MER53 DNA DNA 0 189 3 197 139 23 0 chr12 127194055 127194098 -16592357 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 599 335 59 32 chr12 127194137 127194579 -16591876 - L2 LINE L2 0 3272 2819 272 237 65 11 chr12 127194580 127194673 -16591782 - MER91C DNA MER1_type -2 138 41 292 358 5 40 chr12 127194767 127194968 -16591487 - L2 LINE L2 -576 2738 2545 1173 169 0 92 chr12 127195385 127195646 -16590809 + AluJo SINE Alu 1 237 -75 320 96 0 19 chr12 127195746 127195798 -16590657 + HsTC2 DNA Tc2 1801 1851 -47 831 237 41 76 chr12 127195811 127196128 -16590327 + L1ME3A LINE L1 5850 6155 -15 264 164 0 98 chr12 127196128 127196189 -16590266 + HsTC2 DNA Tc2 1846 1900 0 1968 161 6 15 chr12 127196381 127196705 -16589750 - MER47B DNA MER2_type 0 418 98 660 142 30 56 chr12 127196727 127196885 -16589570 - L1P5 LINE L1 -546 5608 5444 1788 137 11 19 chr12 127197017 127197287 -16589168 - AluJb SINE Alu -44 268 1 529 180 40 0 chr12 127197287 127197387 -16589068 - MER47B DNA MER2_type -312 106 3 36 53 0 0 chr12 127197403 127197460 -16588995 + AT_rich Low_complexity Low_complexity 1 57 0 1695 107 13 13 chr12 127197833 127198067 -16588388 + AluSg/x SINE Alu 72 305 -7 253 235 52 43 chr12 127198086 127198201 -16588254 + L1ME4a LINE L1 6003 6118 -3 2234 147 90 25 chr12 127198209 127198578 -16587877 - L1MB5 LINE L1 -211 5963 5560 1532 187 10 27 chr12 127198578 127198872 -16587583 - AluJo SINE Alu -16 296 8 2234 147 90 25 chr12 127198872 127198937 -16587518 - L1MB5 LINE L1 -614 5560 5501 232 342 13 0 chr12 127199411 127199490 -16586965 - L2 LINE L2 -86 3186 3107 318 336 41 0 chr12 127200210 127200332 -16586123 - L2 LINE L2 -9 3304 3178 1924 197 54 119 chr12 127200536 127201107 -16585348 - L1ME3A LINE L1 -15 6155 5636 1696 170 7 0 chr12 127201107 127201384 -16585071 - AluJb SINE Alu -15 297 19 1924 197 54 119 chr12 127201384 127201512 -16584943 - L1ME3A LINE L1 -534 5636 5501 344 336 32 0 chr12 127201631 127201756 -16584699 - L2 LINE L2 -1 3312 3184 771 311 59 55 chr12 127202458 127203052 -16583403 - L2 LINE L2 -3 3269 2674 773 270 54 24 chr12 127203203 127203505 -16582950 + LTR16C LTR ERVL 36 397 -94 1425 290 59 0 chr12 127203523 127203927 -16582528 + LTR16A LTR ERVL 16 443 -7 285 187 107 13 chr12 127203939 127204014 -16582441 + LTR16C LTR ERVL 407 488 -3 233 270 63 40 chr12 127204449 127204575 -16581880 + LTR16C LTR ERVL 1 129 -362 478 319 55 97 chr12 127205808 127206169 -16580286 - L2 LINE L2 -1 3271 2926 1980 136 0 4 chr12 127206295 127206598 -16579857 - AluSx SINE Alu 0 306 5 370 188 0 0 chr12 127206738 127206802 -16579653 - MIR SINE MIR -78 130 67 244 250 0 42 chr12 127206980 127207076 -16579379 - MER113 DNA MER1_type? -408 113 22 2232 103 6 16 chr12 127207309 127207620 -16578835 + AluSq SINE Alu 1 308 -5 695 198 36 42 chr12 127208010 127208247 -16578208 - ORSL DNA AcHobo 0 275 1 767 274 111 48 chr12 127208253 127208604 -16577851 + MLT1K LTR MaLR 2 374 -214 23 0 0 0 chr12 127209294 127209317 -16577138 + GC_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr12 127209841 127209876 -16576579 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr12 127209972 127209995 -16576460 + AT_rich Low_complexity Low_complexity 1 23 0 820 221 0 0 chr12 127209998 127210143 -16576312 + FRAM SINE Alu 1 144 -32 626 290 84 8 chr12 127210163 127210401 -16576054 - MIR SINE MIR 0 262 7 278 308 47 0 chr12 127210410 127210517 -16575938 + MIR3 SINE MIR 75 186 -22 377 255 10 20 chr12 127211224 127211322 -16575133 - MER94 DNA DNA 0 134 38 331 207 46 0 chr12 127211354 127211441 -16575014 - L1MB4 LINE L1 -1 6179 6089 4944 122 21 5 chr12 127211450 127212260 -16574195 - L1MA4 LINE L1 -281 6019 5200 190 152 43 65 chr12 127212362 127212408 -16574047 + MIR SINE MIR 116 160 -102 404 294 173 61 chr12 127213540 127214013 -16572442 - MLT1L LTR MaLR -87 528 3 216 0 0 0 chr12 127214068 127214092 -16572363 + (T)n Simple_repeat Simple_repeat 1 24 0 500 324 54 0 chr12 127214454 127214658 -16571797 - MIR SINE MIR -17 245 31 563 299 26 10 chr12 127214755 127214949 -16571506 - MIR SINE MIR -37 225 29 535 249 57 78 chr12 127215147 127215503 -16570952 - MLT1J LTR MaLR -45 466 1 1490 237 32 52 chr12 127215880 127216319 -16570136 - LTR16A LTR ERVL 0 450 21 239 253 161 0 chr12 127217396 127217481 -16568974 + MIR SINE MIR 49 145 -63 202 65 0 65 chr12 127217802 127217832 -16568623 + (TTCTG)n Simple_repeat Simple_repeat 3 31 -14 2117 79 40 4 chr12 127217832 127218110 -16568345 - AluSg SINE Alu -17 293 6 202 65 0 65 chr12 127218110 127218125 -16568330 + (TTCTG)n Simple_repeat Simple_repeat 31 45 0 201 250 125 35 chr12 127218430 127218574 -16567881 + MIR3 SINE MIR 3 159 -49 2644 198 72 16 chr12 127218858 127219415 -16567040 + MLT1G1 LTR MaLR 1 588 -7 1855 73 51 0 chr12 127219639 127219873 -16566582 - AluSc SINE Alu -8 301 56 380 270 0 0 chr12 127219873 127219973 -16566482 - MIR SINE MIR -98 164 65 558 212 238 5 chr12 127220135 127220328 -16566127 - MIR SINE MIR -17 245 8 386 352 4 0 chr12 127220966 127221321 -16565134 + (CA)n Simple_repeat Simple_repeat 1 356 0 766 200 88 0 chr12 127221375 127221545 -16564910 + MIR SINE MIR 29 213 -49 648 289 75 9 chr12 127222491 127222719 -16563736 + MIR SINE MIR 13 255 -7 663 230 234 13 chr12 127222904 127223139 -16563316 + MLT1L LTR MaLR 327 613 -2 3256 34 0 0 chr12 127223490 127223873 -16562582 - L1PA4 LINE L1 -3 6152 5770 44614 40 5 2 chr12 127223885 127230025 -16556430 - L1PA3 LINE L1 0 6155 1 494 270 53 0 chr12 127230587 127230739 -16555716 - MIR3 SINE MIR -21 187 28 2273 110 7 3 chr12 127231292 127231593 -16554862 + AluSq SINE Alu 1 302 -11 23 0 0 0 chr12 127232029 127232052 -16554403 + AT_rich Low_complexity Low_complexity 1 23 0 1128 164 23 14 chr12 127232056 127232276 -16554179 - L1MA8 LINE L1 -1 6290 6069 324 0 0 0 chr12 127232669 127232705 -16553750 + (TG)n Simple_repeat Simple_repeat 1 36 0 352 319 0 9 chr12 127232955 127233071 -16553384 - MIR SINE MIR -123 139 25 1615 173 40 4 chr12 127233103 127233381 -16553074 + AluJo SINE Alu 1 288 -24 282 268 8 47 chr12 127233402 127233529 -16552926 - L2 LINE L2 0 3272 3151 222 269 0 0 chr12 127234176 127234228 -16552227 + (CCA)n Simple_repeat Simple_repeat 1 52 0 39980 79 6 6 chr12 127234571 127240723 -16545732 - L1PA6 LINE L1 -4 6150 8 2103 112 4 0 chr12 127240728 127241004 -16545451 - AluSx SINE Alu -18 294 18 1021 278 69 38 chr12 127241528 127241590 -16544865 - MLT1I LTR MaLR 0 409 350 2304 114 0 0 chr12 127241590 127241896 -16544559 + AluSq SINE Alu 1 306 -7 1021 278 69 38 chr12 127241896 127242225 -16544230 - MLT1I LTR MaLR -59 350 6 516 188 0 0 chr12 127242227 127242312 -16544143 - L1ME LINE L1 -500 5621 5537 812 283 87 14 chr12 127242333 127242619 -16543836 - L1ME LINE L1 -303 5818 5512 3226 16 13 0 chr12 127243452 127243824 -16542631 - L1PA4 LINE L1 0 6155 5779 201 278 37 0 chr12 127244014 127244068 -16542387 + (CATG)n Simple_repeat Simple_repeat 1 56 0 259 234 65 0 chr12 127244091 127244168 -16542287 - MLT1L LTR MaLR 0 615 534 830 279 178 31 chr12 127244298 127244754 -16541701 - MLT1L LTR MaLR -76 539 17 194 257 28 111 chr12 127245052 127245142 -16541313 - MIR SINE MIR -129 133 58 2358 103 6 3 chr12 127245142 127245453 -16541002 - AluSx SINE Alu 0 312 1 194 257 28 111 chr12 127245453 127245506 -16540949 - MIR SINE MIR -204 58 2 270 0 0 0 chr12 127245727 127245757 -16540698 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2173 101 10 0 chr12 127245757 127246039 -16540416 - AluSx SINE Alu -27 285 1 24 0 0 0 chr12 127246044 127246068 -16540387 + AT_rich Low_complexity Low_complexity 1 24 0 418 266 84 13 chr12 127246770 127246924 -16539531 + MER20B DNA MER1_type 10 174 -609 868 251 142 38 chr12 127247629 127248264 -16538191 - LTR50 LTR ERVL -6 789 3 201 281 138 86 chr12 127248303 127248687 -16537768 - L2 LINE L2 -31 3282 2879 878 312 52 12 chr12 127248967 127249387 -16537068 + L1ME4a LINE L1 5391 5827 -294 215 308 0 0 chr12 127249948 127250000 -16536455 + MIR SINE MIR 34 85 -177 2138 163 19 4 chr12 127250000 127250464 -16535991 - MLT2B1 LTR ERVL 0 515 1 404 254 35 21 chr12 127250464 127250606 -16535849 + MIR SINE MIR 81 224 -38 180 0 0 0 chr12 127250744 127250764 -16535691 + (GA)n Simple_repeat Simple_repeat 2 21 0 2104 140 38 11 chr12 127251013 127251378 -16535077 - THE1C LTR MaLR 0 375 1 291 54 0 0 chr12 127251625 127251662 -16534793 + (CA)n Simple_repeat Simple_repeat 2 38 0 392 225 26 105 chr12 127252388 127252579 -16533876 - MER91A DNA MER1_type -3 193 18 1655 181 0 19 chr12 127252888 127253208 -16533247 - L1PB4 LINE L1 -2 6154 5841 508 231 10 0 chr12 127253462 127253566 -16532889 + MIR SINE MIR 41 145 -117 312 225 78 78 chr12 127253734 127253876 -16532579 - MIR SINE MIR -52 210 69 605 252 54 29 chr12 127254391 127254643 -16531812 - MLT1H LTR MaLR -280 269 1 515 355 103 1 chr12 127254654 127255100 -16531355 - L2 LINE L2 -220 3052 2563 387 41 0 0 chr12 127255239 127255288 -16531167 + (TTCCC)n Simple_repeat Simple_repeat 3 51 0 719 259 137 4 chr12 127255710 127255996 -16530459 + LTR16A LTR ERVL 8 394 -56 2744 156 18 14 chr12 127255996 127256497 -16529958 - L1MB8 LINE L1 -12 6166 5664 719 259 137 4 chr12 127256497 127256563 -16529892 + LTR16A LTR ERVL 394 450 0 328 318 45 0 chr12 127256567 127256677 -16529778 + L1ME3 LINE L1 5623 5737 -2071 252 273 50 20 chr12 127256700 127256799 -16529656 - MIR3 SINE MIR -92 116 15 546 301 104 42 chr12 127256845 127257154 -16529301 + MER102b DNA MER1_type 1 328 -13 1662 203 21 37 chr12 127257314 127257694 -16528761 - MLT1A2 LTR MaLR 0 374 1 239 238 0 71 chr12 127257782 127257866 -16528589 + LTR67 LTR ERVL 456 533 -24 429 292 103 21 chr12 127257910 127258143 -16528312 + MIR SINE MIR 9 260 -2 2235 105 3 7 chr12 127259059 127259354 -16527101 - AluSx SINE Alu -18 294 1 198 0 0 0 chr12 127259504 127259526 -16526929 + (A)n Simple_repeat Simple_repeat 1 22 0 553 275 175 38 chr12 127259621 127259912 -16526543 - MLT1K LTR MaLR -234 354 24 271 325 14 7 chr12 127259981 127260117 -16526338 - MIR SINE MIR -67 141 23 547 276 104 0 chr12 127260433 127260654 -16525801 + L2 LINE L2 385 628 -2686 729 156 111 49 chr12 127260654 127260879 -16525576 + L2 LINE L2 2289 2527 -787 942 237 55 48 chr12 127260883 127261003 -16525452 + L1ME3 LINE L1 5791 5909 -261 2386 100 0 0 chr12 127261003 127261304 -16525151 + AluSx SINE Alu 1 301 -11 942 237 55 48 chr12 127261304 127261493 -16524962 + L1ME3 LINE L1 5909 6088 -82 1443 182 0 0 chr12 127261493 127261773 -16524682 + L1MA4 LINE L1 6015 6294 -6 942 237 55 48 chr12 127261773 127261854 -16524601 + L1ME3 LINE L1 6088 6167 -3 378 333 26 0 chr12 127261945 127262101 -16524354 + L2 LINE L2 2467 2626 -688 1464 195 141 48 chr12 127262144 127262200 -16524255 + MLT1D LTR MaLR 2 51 -454 1702 201 10 58 chr12 127262200 127262593 -16523862 - MLT1A2 LTR MaLR 0 374 1 1464 195 141 48 chr12 127262593 127262997 -16523458 + MLT1D LTR MaLR 51 505 0 454 314 57 10 chr12 127262998 127263192 -16523263 - L1MC/D LINE L1 -2025 5783 5581 434 311 0 0 chr12 127263243 127263375 -16523080 - MIR SINE MIR -94 168 37 456 333 0 0 chr12 127263486 127263615 -16522840 - L2 LINE L2 -10 3262 3134 187 225 247 34 chr12 127264175 127264264 -16522191 + L2 LINE L2 3200 3307 -6 738 282 40 0 chr12 127264937 127265139 -16521316 - MIR SINE MIR -21 241 32 324 233 113 67 chr12 127265250 127265400 -16521055 - MLT1J LTR MaLR 0 511 355 556 228 122 117 chr12 127266216 127266678 -16519777 + MLT1J LTR MaLR 111 508 -3 205 356 9 17 chr12 127266808 127266923 -16519532 - MIR SINE MIR -5 257 144 323 280 0 0 chr12 127267080 127267173 -16519282 - L1MC4a LINE L1 -1918 5890 5798 441 273 77 26 chr12 127267173 127267367 -16519088 + L3 LINE CR1 1371 1574 -3 2221 117 10 0 chr12 127267512 127267812 -16518643 + AluSx SINE Alu 1 303 -9 1986 188 58 37 chr12 127267990 127268475 -16517980 + MLT1D LTR MaLR 1 495 -10 326 238 12 0 chr12 127268585 127268675 -16517780 + MIR SINE MIR 74 142 -66 349 308 22 60 chr12 127268675 127268860 -16517595 + MER5B DNA MER1_type 1 178 0 618 224 27 14 chr12 127268911 127269058 -16517397 + MER5B DNA MER1_type 26 174 -4 335 311 33 37 chr12 127269142 127269386 -16517069 + MIR SINE MIR 2 244 -18 231 226 43 0 chr12 127269469 127269545 -16516910 + MIR SINE MIR 97 142 -66 1708 251 37 37 chr12 127269911 127270485 -16515970 - MER20B DNA MER1_type -13 770 197 423 149 0 0 chr12 127271026 127271100 -16515355 + (TC)n Simple_repeat Simple_repeat 1 74 0 204 204 102 0 chr12 127271147 127271196 -16515259 - MIR SINE MIR -9 253 200 472 345 48 8 chr12 127271204 127271456 -16514999 + L2 LINE L2 2426 2687 -627 1047 145 79 28 chr12 127271456 127271670 -16514785 - MER96B DNA MER1_type? -182 235 11 1034 252 57 82 chr12 127271670 127272321 -16514134 + L2 LINE L2 2698 3313 0 286 238 96 8 chr12 127272351 127272477 -16513978 - MIR SINE MIR -63 145 21 258 313 30 67 chr12 127272501 127272635 -16513820 + MIR SINE MIR 12 140 -122 1181 258 105 24 chr12 127272665 127273161 -16513294 + L2 LINE L2 2440 2975 -339 1208 93 0 11 chr12 127273216 127273396 -16513059 + (TGG)n Simple_repeat Simple_repeat 1 358 0 1208 93 0 11 chr12 127273396 127273578 -16512877 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1326 78 0 0 chr12 127273637 127273817 -16512638 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 1209 106 0 0 chr12 127273908 127274088 -16512367 + (TGG)n Simple_repeat Simple_repeat 1 180 0 251 315 28 19 chr12 127274623 127274731 -16511724 + L2 LINE L2 2942 3050 -222 877 69 15 8 chr12 127274916 127275046 -16511409 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2194 107 4 0 chr12 127275050 127275331 -16511124 - AluSx SINE Alu -30 282 1 245 311 23 15 chr12 127275336 127275468 -16510987 + MER5A DNA MER1_type 1 133 -56 237 200 36 18 chr12 127275590 127275645 -16510810 + L2 LINE L2 3124 3179 -93 222 290 72 0 chr12 127275707 127275776 -16510679 - L2 LINE L2 -3 3310 3237 2575 148 14 14 chr12 127275848 127276280 -16510175 - MSTB1 LTR MaLR 0 432 1 388 321 48 84 chr12 127276383 127276825 -16509630 + L2 LINE L2 2808 3233 -39 447 296 45 11 chr12 127277026 127277202 -16509253 + MIR SINE MIR 6 187 -75 414 265 187 30 chr12 127277236 127277402 -16509053 - MIR SINE MIR -70 192 1 224 178 22 0 chr12 127277437 127277482 -16508973 + L2 LINE L2 3251 3296 -17 299 323 23 30 chr12 127277817 127277922 -16508533 - L2 LINE L2 -1 3271 3168 402 308 71 6 chr12 127277922 127278091 -16508364 + MIR SINE MIR 2 181 -81 209 235 0 12 chr12 127278171 127278252 -16508203 + (ATG)n Simple_repeat Simple_repeat 3 82 0 431 269 21 14 chr12 127278304 127278445 -16508010 + MIR SINE MIR 34 175 -87 669 232 49 11 chr12 127279138 127279323 -16507132 - MIR SINE MIR -8 254 63 252 220 0 0 chr12 127279920 127279970 -16506485 + L2 LINE L2 3211 3260 -12 525 262 120 27 chr12 127280363 127280588 -16505867 - MIR SINE MIR 0 262 17 23 33 0 0 chr12 127281071 127281101 -16505354 + AT_rich Low_complexity Low_complexity 1 30 0 427 151 179 9 chr12 127281663 127281769 -16504686 + MER117 DNA MER1_type 72 195 -2 240 350 108 19 chr12 127282404 127282561 -16503894 - L2 LINE L2 0 3272 3102 484 247 113 38 chr12 127282614 127282800 -16503655 - MIR SINE MIR 0 262 63 383 230 50 72 chr12 127282801 127282940 -16503515 - MLT1-int LTR MaLR -208 1163 1028 1798 80 9 4 chr12 127283007 127283232 -16503223 - AluSg/x SINE Alu -11 301 76 239 174 379 38 chr12 127284228 127284360 -16502095 + MLT1L LTR MaLR 439 615 0 595 271 131 9 chr12 127284499 127284713 -16501742 + MIR SINE MIR 13 252 -10 328 145 121 36 chr12 127284777 127284860 -16501595 - MER103 DNA DNA -18 148 59 474 230 151 7 chr12 127284952 127285091 -16501364 + MER5A DNA MER1_type 31 189 0 3023 106 12 7 chr12 127285735 127286161 -16500294 + MSTA LTR MaLR 1 428 0 1073 91 0 32 chr12 127286319 127286505 -16499950 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 908 101 0 7 chr12 127286515 127286654 -16499801 + (TTCCC)n Simple_repeat Simple_repeat 4 141 0 1630 168 45 0 chr12 127286657 127286925 -16499530 - AluJb SINE Alu -32 280 1 356 253 29 106 chr12 127287749 127287919 -16498536 - L2 LINE L2 -2 3311 3155 521 92 126 0 chr12 127288144 127288231 -16498224 - L1PA10 LINE L1 0 6168 6071 537 249 98 0 chr12 127289178 127289351 -16497104 - MIR SINE MIR 0 262 73 1259 246 70 42 chr12 127289373 127289609 -16496846 - LTR16C LTR ERVL -6 485 232 2321 130 28 102 chr12 127289609 127290078 -16496377 + Tigger2a DNA MER2_type 1 434 0 1259 246 70 42 chr12 127290078 127290243 -16496212 - LTR16C LTR ERVL -259 232 73 562 291 70 9 chr12 127290243 127290456 -16495999 + MIR SINE MIR 23 248 -14 180 250 0 0 chr12 127290763 127290803 -16495652 - MIR SINE MIR -191 71 32 233 267 117 0 chr12 127290952 127291072 -16495383 + Tigger2 DNA MER2_type 2581 2714 -4 264 271 45 60 chr12 127291098 127291231 -16495224 - LTR16C LTR ERVL -288 203 73 478 303 81 9 chr12 127291231 127291442 -16495013 + MIR SINE MIR 23 248 -14 213 318 15 0 chr12 127291748 127291814 -16494641 - MIR SINE MIR -191 71 5 552 270 25 13 chr12 127292239 127292420 -16494035 - MIR SINE MIR -51 157 23 2154 130 0 0 chr12 127292675 127292967 -16493488 + AluSx SINE Alu 3 294 -18 2302 201 14 2 chr12 127292967 127293405 -16493050 + MER74C LTR ERVL 13 455 -5 299 250 12 12 chr12 127293412 127293496 -16492959 + MIR SINE MIR 47 130 -78 2206 121 0 0 chr12 127293538 127293827 -16492628 - AluSx SINE Alu -23 289 1 544 301 55 18 chr12 127295018 127295237 -16491218 - MIR SINE MIR -34 228 2 189 209 0 23 chr12 127295248 127295291 -16491164 - MIR SINE MIR -63 145 104 1854 133 7 43 chr12 127295330 127295631 -16490824 - AluJb SINE Alu -22 290 1 371 271 199 0 chr12 127295643 127295794 -16490661 + MIR SINE MIR 72 252 -10 353 291 81 66 chr12 127295822 127296080 -16490375 - MLT1J LTR MaLR -4 507 246 197 229 188 62 chr12 127296338 127296434 -16490021 - MIR SINE MIR -79 129 22 1587 139 64 46 chr12 127296903 127297203 -16489252 - AluJb SINE Alu 0 305 1 1401 212 124 31 chr12 127297916 127298392 -16488063 - MLT2B1 LTR ERVL 0 520 1 238 238 10 79 chr12 127298437 127298538 -16487917 + MIR SINE MIR 113 206 -56 2146 145 18 0 chr12 127298681 127299012 -16487443 + MER1B DNA MER1_type 1 337 0 394 275 69 15 chr12 127299157 127299288 -16487167 + MLT1J2 LTR MaLR 1 138 -312 1460 145 25 0 chr12 127299320 127299373 -16487082 + MER50 LTR ERV1 1 51 -683 468 0 0 0 chr12 127299373 127299425 -16487030 + (CA)n Simple_repeat Simple_repeat 2 53 0 1460 145 25 0 chr12 127299425 127299613 -16486842 + MER50 LTR ERV1 51 248 -486 * 1996 115 3 102 chr12 127299607 127299672 -16486783 + MER50 LTR ERV1 397 467 -267 2462 80 0 0 chr12 127299672 127299972 -16486483 + AluY SINE Alu 1 300 -11 1996 115 3 102 chr12 127299972 127300280 -16486175 + MER50 LTR ERV1 467 733 -1 596 256 27 28 chr12 127300307 127300494 -16485961 + MLT1J2 LTR MaLR 277 433 -17 195 69 0 0 chr12 127300787 127300816 -16485639 + (A)n Simple_repeat Simple_repeat 1 29 0 2138 106 0 3 chr12 127302009 127302291 -16484164 + AluSx SINE Alu 1 281 -31 337 266 121 40 chr12 127302576 127302700 -16483755 + MER5A DNA MER1_type 50 183 -6 180 0 0 0 chr12 127302701 127302721 -16483734 + (T)n Simple_repeat Simple_repeat 1 20 0 2183 166 85 2 chr12 127302793 127302878 -16483577 + L1MB5 LINE L1 5705 5782 -392 1850 149 0 4 chr12 127302878 127303153 -16483302 + AluJb SINE Alu 1 274 -38 2183 166 85 2 chr12 127303153 127303501 -16482954 + L1MB5 LINE L1 5782 6174 0 307 351 0 27 chr12 127303518 127303666 -16482789 - MER5B DNA MER1_type -30 148 5 1916 147 7 14 chr12 127303713 127304006 -16482449 + AluJo SINE Alu 5 295 -17 1399 172 60 94 chr12 127304087 127304471 -16481984 + MLT1A2 LTR MaLR 4 374 0 195 259 69 0 chr12 127305434 127305492 -16480963 + L2 LINE L2 3137 3198 -74 452 272 62 58 chr12 127305624 127305848 -16480607 - MIR SINE MIR -15 247 23 251 273 39 0 chr12 127306338 127306415 -16480040 + MLT1K LTR MaLR 509 588 0 334 258 61 15 chr12 127306448 127306580 -16479875 - L2 LINE L2 -194 3078 2941 455 333 55 6 chr12 127306621 127306786 -16479669 - MIR SINE MIR -71 191 19 321 68 0 0 chr12 127307200 127307244 -16479211 + (TG)n Simple_repeat Simple_repeat 1 44 0 1763 141 0 8 chr12 127307485 127307747 -16478708 + AluSx SINE Alu 35 294 -18 633 130 0 10 chr12 127307808 127307908 -16478547 + L1PB1 LINE L1 6053 6151 0 498 177 10 10 chr12 127307987 127308083 -16478372 - L2 LINE L2 -9 3304 3209 * 1107 255 95 38 chr12 127308080 127308602 -16477853 + L2 LINE L2 2763 3313 0 287 301 69 20 chr12 127308617 127308871 -16477584 - L1MC/D LINE L1 -754 5392 5204 298 239 52 89 chr12 127308930 127309143 -16477312 - L2 LINE L2 -90 3223 3019 245 297 44 44 chr12 127309482 127309573 -16476882 - MLT1K LTR MaLR -381 207 117 252 143 0 0 chr12 127309665 127309707 -16476748 + (CA)n Simple_repeat Simple_repeat 1 42 0 2325 127 28 0 chr12 127310118 127310472 -16475983 + THE1B LTR MaLR 1 364 0 221 274 44 18 chr12 127310507 127310620 -16475835 - L2 LINE L2 -79 3234 3119 210 296 102 9 chr12 127310676 127310784 -16475671 - L2 LINE L2 -235 3037 2920 472 346 72 21 chr12 127310860 127311233 -16475222 - L2 LINE L2 -400 2914 2523 226 291 23 12 chr12 127311271 127311357 -16475098 + GA-rich Low_complexity Low_complexity 2 88 0 352 325 71 64 chr12 127311359 127311685 -16474770 - L2 LINE L2 -822 2492 2165 600 265 74 26 chr12 127313000 127313237 -16473218 - MIR SINE MIR -2 260 19 667 195 67 5 chr12 127313430 127313625 -16472830 - L1ME4a LINE L1 -1 6120 5914 417 194 59 83 chr12 127313629 127313966 -16472489 - L1P4 LINE L1 -538 5583 5266 1826 107 118 7 chr12 127314180 127314450 -16472005 + AluSg1 SINE Alu 1 300 -9 344 203 0 13 chr12 127314628 127314707 -16471748 - MIR SINE MIR -105 157 80 198 0 0 0 chr12 127314774 127314796 -16471659 + (TCCA)n Simple_repeat Simple_repeat 2 23 0 2349 144 42 37 chr12 127314933 127315364 -16471091 - Tigger2a DNA MER2_type 0 434 2 422 227 16 55 chr12 127315617 127315655 -16470800 - MIR SINE MIR -70 192 154 4360 74 5 0 chr12 127315655 127316206 -16470249 - MER41A LTR ERV1 0 554 1 422 227 16 55 chr12 127316206 127316295 -16470160 - MIR SINE MIR -108 154 70 251 178 0 0 chr12 127317213 127317258 -16469197 + MER3 DNA MER1_type 2 46 -163 242 239 68 57 chr12 127317880 127317968 -16468487 + MIR SINE MIR 11 99 -163 242 176 20 20 chr12 127318021 127318072 -16468383 + MLT1L LTR MaLR 1 51 -564 942 240 39 97 chr12 127318105 127318542 -16467913 + MLT1L LTR MaLR 60 615 0 288 347 0 64 chr12 127318766 127318939 -16467516 - MIR3 SINE MIR -6 202 41 211 222 0 0 chr12 127319206 127319251 -16467204 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2034 132 0 3 chr12 127319320 127319608 -16466847 + AluSx SINE Alu 1 287 -25 279 0 0 0 chr12 127319611 127319642 -16466813 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 2003 113 33 0 chr12 127319642 127319954 -16466501 + AluSx SINE Alu 1 321 0 348 296 216 6 chr12 127320387 127320563 -16465892 + MIR SINE MIR 20 232 -30 1154 266 83 20 chr12 127320565 127320915 -16465540 - LTR16C LTR ERVL -29 462 91 277 220 30 80 chr12 127320941 127321041 -16465414 + MIR SINE MIR 22 116 -146 250 247 82 0 chr12 127321048 127321121 -16465334 + MER5A DNA MER1_type 13 91 -98 426 131 12 48 chr12 127321121 127321205 -16465250 - MLT1F1 LTR MaLR 0 567 487 711 237 0 32 chr12 127321686 127321872 -16464583 - MIR SINE MIR -24 238 59 2458 119 62 36 chr12 127322008 127322429 -16464026 - MSTB1 LTR MaLR 0 432 1 1408 262 90 22 chr12 127322494 127323208 -16463247 - L2 LINE L2 0 3313 2536 589 213 12 0 chr12 127323893 127324057 -16462398 + GA-rich Low_complexity Low_complexity 2 167 0 1662 145 0 0 chr12 127324063 127324298 -16462157 + AluSx SINE Alu 1 235 -77 222 118 0 0 chr12 127324325 127324359 -16462096 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1101 53 0 53 chr12 127324467 127324657 -16461798 + (TC)n Simple_repeat Simple_repeat 1 180 0 1550 172 22 0 chr12 127324721 127324989 -16461466 - AluSx SINE Alu -38 274 1 393 287 33 99 chr12 127324992 127325326 -16461129 - L2 LINE L2 -3 3310 2999 780 298 9 4 chr12 127325690 127325918 -16460537 + MIR SINE MIR 15 243 -19 351 309 51 28 chr12 127326036 127326214 -16460241 + MER5A DNA MER1_type 7 188 -1 586 271 11 28 chr12 127326221 127326402 -16460053 + MIR SINE MIR 3 180 -82 273 156 28 28 chr12 127326402 127326511 -16459944 + (TA)n Simple_repeat Simple_repeat 1 109 0 237 180 20 0 chr12 127327152 127327202 -16459253 + MIR SINE MIR 78 128 -80 376 257 58 73 chr12 127327214 127327420 -16459035 + MIR SINE MIR 1 203 -59 618 266 53 29 chr12 127327714 127327958 -16458497 + MIR SINE MIR 13 262 0 218 301 15 90 chr12 127328120 127328253 -16458202 + MIR SINE MIR 80 202 -60 1070 248 73 89 chr12 127328659 127328916 -16457539 - LTR33 LTR ERVL -8 513 266 2161 114 17 0 chr12 127328916 127329213 -16457242 + AluSx SINE Alu 3 304 -8 1070 248 73 89 chr12 127329213 127329472 -16456983 - LTR33 LTR ERVL -255 266 5 603 244 93 0 chr12 127329806 127329978 -16456477 + MIR SINE MIR 5 192 -70 409 284 9 9 chr12 127330450 127330566 -16455889 - MIR SINE MIR -117 145 30 383 265 179 38 chr12 127330576 127331001 -16455454 - MLT1L LTR MaLR 0 615 113 362 294 145 9 chr12 127331235 127331456 -16454999 + MIR SINE MIR 12 262 0 272 259 35 69 chr12 127332008 127332124 -16454331 + MIR SINE MIR 28 139 -69 210 301 117 29 chr12 127332123 127332226 -16454229 + MIR SINE MIR 11 122 -140 * 850 154 44 0 chr12 127332245 127332381 -16454074 - MLT1D LTR MaLR -363 142 1 560 202 289 14 chr12 127332381 127332589 -16453866 + L1ME3A LINE L1 5904 6168 -2 428 264 107 38 chr12 127333066 127333291 -16453164 - MIR SINE MIR -12 250 16 210 189 0 0 chr12 127333830 127333867 -16452588 - MER5B DNA MER1_type -98 80 44 450 69 0 0 chr12 127334002 127334060 -16452395 - Alu SINE Alu -257 61 4 2223 103 3 3 chr12 127334376 127334667 -16451788 + AluSc SINE Alu 1 291 -18 1064 234 14 0 chr12 127334907 127335116 -16451339 - MER58A DNA MER1_type -12 212 1 2365 107 3 0 chr12 127335516 127335826 -16450629 - AluSq SINE Alu -2 311 1 189 0 0 0 chr12 127336092 127336113 -16450342 + (TG)n Simple_repeat Simple_repeat 2 22 0 607 312 84 15 chr12 127336861 127337197 -16449258 - LTR16C LTR ERVL 0 491 96 211 231 35 116 chr12 127337624 127337731 -16448724 + L2 LINE L2 2290 2375 -939 455 210 191 6 chr12 127337731 127337888 -16448567 + MER5A DNA MER1_type 4 189 0 211 231 35 116 chr12 127337888 127337979 -16448476 + L2 LINE L2 2375 2472 -842 390 309 153 27 chr12 127338120 127338414 -16448041 - L2 LINE L2 -5 3267 2937 1174 245 93 45 chr12 127338668 127339109 -16447346 + MLT1C LTR MaLR 6 467 0 225 250 0 16 chr12 127339174 127339238 -16447217 - MIR SINE MIR -102 160 98 1570 216 70 31 chr12 127339397 127339465 -16446990 + MLT1C LTR MaLR 6 70 -397 4324 160 55 14 chr12 127339465 127340258 -16446197 - LTR1B LTR ERV1 0 826 1 1570 216 70 31 chr12 127340258 127340633 -16445822 + MLT1C LTR MaLR 70 466 -1 512 109 18 18 chr12 127341518 127341628 -16444827 + (GA)n Simple_repeat Simple_repeat 2 111 0 247 309 73 9 chr12 127341687 127341797 -16444658 - L2 LINE L2 -15 3257 3141 389 289 67 26 chr12 127342150 127342302 -16444153 - MIR3 SINE MIR -56 152 14 271 288 59 59 chr12 127343126 127343244 -16443211 - L2 LINE L2 0 3272 3155 339 222 202 20 chr12 127343361 127343460 -16442995 - LTR32 LTR ERVL 0 471 355 1110 254 39 38 chr12 127343462 127343942 -16442513 - L1MC5 LINE L1 -892 6916 6407 308 298 141 11 chr12 127343987 127344178 -16442277 - MIR SINE MIR -13 249 34 204 125 0 0 chr12 127344321 127344353 -16442102 + (GA)n Simple_repeat Simple_repeat 1 32 0 182 370 111 7 chr12 127344617 127344752 -16441703 + L2 LINE L2 2913 3061 -211 1694 235 67 2 chr12 127344788 127345222 -16441233 + MLT1C LTR MaLR 6 467 0 554 254 121 13 chr12 127346353 127346585 -16439870 + MIR SINE MIR 1 257 -5 2772 58 0 0 chr12 127346604 127346946 -16439509 + L1PA5 LINE L1 5811 6152 -2 23 54 0 0 chr12 127347058 127347095 -16439360 + AT_rich Low_complexity Low_complexity 1 37 0 429 286 60 6 chr12 127347167 127347335 -16439120 + MIR SINE MIR 36 212 -50 542 203 111 7 chr12 127347361 127347514 -16438941 + MIR SINE MIR 60 228 -34 346 230 257 7 chr12 127347576 127347724 -16438731 - MIR SINE MIR -13 249 65 700 228 31 25 chr12 127348337 127348499 -16437956 + MER63A DNA MER1_type 48 210 0 393 256 0 0 chr12 127348540 127348630 -16437825 + MIR SINE MIR 46 135 -127 873 283 44 60 chr12 127348630 127349043 -16437412 - MLT1I LTR MaLR 0 409 4 297 289 112 37 chr12 127349187 127349374 -16437081 - MIR3 SINE MIR -6 202 2 559 286 85 76 chr12 127349649 127350072 -16436383 - MLT1K LTR MaLR 0 588 162 2694 174 31 6 chr12 127350428 127350946 -16435509 + MER74A LTR ERVL 1 531 -27 1543 265 53 22 chr12 127351432 127351922 -16434533 - LTR33 LTR ERVL 0 521 17 1939 209 122 21 chr12 127352738 127353220 -16433235 + MLT1F LTR MaLR 12 542 0 304 294 119 18 chr12 127353299 127353408 -16433047 - L2 LINE L2 0 3272 3153 619 305 46 25 chr12 127353432 127353671 -16432784 + MIR SINE MIR 6 249 -13 292 265 20 20 chr12 127353692 127353794 -16432661 - MIR SINE MIR -80 182 81 3893 166 13 10 chr12 127353989 127354675 -16431780 - L1MC3 LINE L1 -12 7773 7086 250 274 115 35 chr12 127355119 127355232 -16431223 + L1ME LINE L1 5413 5534 -587 437 313 52 13 chr12 127355236 127355469 -16430986 + L1ME LINE L1 5568 5809 -312 1071 260 142 32 chr12 127355528 127355717 -16430738 + LTR16C LTR ERVL 14 181 -310 1077 169 77 24 chr12 127355717 127355924 -16430531 + MER20 DNA MER1_type 1 218 -1 1071 260 142 32 chr12 127355924 127356165 -16430290 + LTR16C LTR ERVL 181 491 0 216 0 0 0 chr12 127356255 127356279 -16430176 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 288 170 0 0 chr12 127356342 127356395 -16430060 + T-rich Low_complexity Low_complexity 3 55 0 668 283 36 28 chr12 127356800 127357051 -16429404 - MIR SINE MIR -4 258 6 762 256 31 70 chr12 127357122 127357380 -16429075 + MIR SINE MIR 2 249 -13 723 209 16 32 chr12 127357460 127357647 -16428808 + MIR SINE MIR 28 211 -51 629 245 53 16 chr12 127357637 127357825 -16428630 - MIR SINE MIR -35 227 33 * 314 181 49 85 chr12 127358214 127358281 -16428174 + MER112 DNA MER1_type 9 77 -183 180 0 0 0 chr12 127358281 127358301 -16428154 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 306 0 0 0 chr12 127358300 127358334 -16428121 + (CA)n Simple_repeat Simple_repeat 1 34 0 314 181 49 85 chr12 127358301 127358454 -16428001 + MER112 DNA MER1_type 77 250 -10 890 311 95 16 chr12 127358624 127359077 -16427378 + L2 LINE L2 2818 3306 -7 748 168 27 7 chr12 127359179 127359328 -16427127 - L1MB8 LINE L1 -6 6172 6021 2654 115 37 88 chr12 127359335 127359882 -16426573 - L1MA8 LINE L1 -4 6287 5769 12596 85 8 4 chr12 127359882 127362579 -16423876 - L1PA8 LINE L1 0 6172 3465 28650 119 13 62 chr12 127362679 127368472 -16417983 - L1PA8 LINE L1 -294 5878 413 261 0 0 0 chr12 127368472 127368501 -16417954 + (CAA)n Simple_repeat Simple_repeat 2 30 0 28650 119 13 62 chr12 127368501 127368885 -16417570 - L1PA8 LINE L1 -5759 413 12 2857 124 40 2 chr12 127368892 127369626 -16416829 - L1MA8 LINE L1 -506 5785 5027 11150 218 42 7 chr12 127369626 127373511 -16412944 - L1MB7 LINE L1 -149 6104 2132 5644 131 21 3 chr12 127373538 127374004 -16412451 - L1PA15 LINE L1 0 6165 5709 2104 134 0 0 chr12 127374004 127374295 -16412160 + AluSx SINE Alu 1 291 -21 5644 131 21 3 chr12 127374295 127375590 -16410865 - L1PA15 LINE L1 -456 5709 4392 228 86 0 0 chr12 127375590 127375625 -16410830 + (TG)n Simple_repeat Simple_repeat 2 36 0 5644 131 21 3 chr12 127375625 127375719 -16410736 - L1PA15 LINE L1 -1773 4392 4301 6826 164 20 49 chr12 127375727 127378100 -16408355 - L1MA1 LINE L1 -109 6193 3935 1439 192 0 82 chr12 127378100 127378417 -16408038 + AluJb SINE Alu 3 293 -19 6826 164 20 49 chr12 127378417 127379118 -16407337 - L1MA1 LINE L1 -2367 3935 3215 1488 93 0 0 chr12 127379542 127379746 -16406709 - L1PA13 LINE L1 -4 6159 5956 2243 205 41 13 chr12 127379788 127380126 -16406329 - L1ME3 LINE L1 -91 6071 5744 2018 138 30 46 chr12 127380126 127380405 -16406050 - THE1B LTR MaLR 0 364 91 1869 110 0 37 chr12 127380405 127380677 -16405778 + AluSq SINE Alu 40 301 -12 2018 138 30 46 chr12 127380677 127380767 -16405688 - THE1B LTR MaLR -273 91 1 2243 205 41 13 chr12 127380767 127381278 -16405177 - L1ME3 LINE L1 -418 5744 5129 254 263 40 0 chr12 127381296 127381372 -16405083 + MLT1C LTR MaLR 389 467 0 801 199 93 4 chr12 127381393 127381619 -16404836 - L1ME3 LINE L1 -1496 4650 4405 26 30 0 0 chr12 127381740 127381773 -16404682 + AT_rich Low_complexity Low_complexity 1 33 0 435 202 80 32 chr12 127381787 127381975 -16404480 - L1ME3 LINE L1 -1742 4404 4208 191 353 20 29 chr12 127382018 127382120 -16404335 + MIR3 SINE MIR 77 177 -31 456 262 47 40 chr12 127382120 127382269 -16404186 + MIR SINE MIR 32 181 -81 514 295 40 0 chr12 127382434 127382583 -16403872 - MER5A DNA MER1_type 0 189 35 1652 118 24 10 chr12 127382588 127382876 -16403579 - THE1A LTR MaLR -60 295 4 236 258 136 0 chr12 127383751 127383817 -16402638 - L2 LINE L2 -5 3308 3234 394 321 145 32 chr12 127384189 127384438 -16402017 - L2 LINE L2 -2 3270 2994 278 237 93 0 chr12 127384866 127384963 -16401492 - Charlie8 DNA MER1_type -2240 177 72 192 274 39 0 chr12 127385755 127385806 -16400649 + L3 LINE CR1 1498 1550 -27 249 316 42 21 chr12 127385977 127386072 -16400383 - MER5A DNA MER1_type -1 188 92 945 298 50 48 chr12 127386235 127386755 -16399700 + MLT1G1 LTR MaLR 75 595 0 349 310 68 0 chr12 127386940 127387100 -16399355 - MLT1J2 LTR MaLR -297 188 10 436 332 89 14 chr12 127387179 127387393 -16399062 + MIR SINE MIR 8 237 -25 206 182 0 23 chr12 127387395 127387439 -16399016 + A-rich Low_complexity Low_complexity 6 48 0 380 290 129 0 chr12 127387526 127387650 -16398805 - MIR SINE MIR -75 187 48 215 269 0 75 chr12 127388051 127388118 -16398337 + MIR SINE MIR 110 171 -91 1643 192 10 0 chr12 127388401 127388692 -16397763 + AluJo SINE Alu 1 294 -18 196 238 0 0 chr12 127388694 127388736 -16397719 + MIR SINE MIR 202 243 -19 1227 275 40 28 chr12 127388956 127389218 -16397237 - L1M4 LINE L1 -1039 5107 4850 2062 154 0 0 chr12 127389218 127389523 -16396932 + AluJb SINE Alu 1 305 -7 1227 275 40 28 chr12 127389523 127389828 -16396627 - L1M4 LINE L1 -1296 4850 4533 251 209 12 116 chr12 127389830 127389916 -16396539 - MIR SINE MIR -82 180 104 500 216 11 102 chr12 127389967 127390074 -16396381 - MER97a DNA MER1_type? -715 179 93 1926 167 0 3 chr12 127390074 127390385 -16396070 - AluJo SINE Alu -2 310 1 500 216 11 102 chr12 127390385 127390453 -16396002 - MER97a DNA MER1_type? -801 93 20 245 150 0 0 chr12 127390615 127390655 -16395800 + LTR55 LTR ERV 1 40 -508 1665 182 127 24 chr12 127390655 127391121 -16395334 + LTR55 LTR ERV 16 529 -19 3572 124 54 5 chr12 127391233 127391807 -16394648 - MER44D DNA MER2_type 0 605 132 303 173 0 0 chr12 127392906 127392958 -16393497 + L1MC4 LINE L1 6652 6703 -1339 396 167 0 0 chr12 127392965 127393037 -16393418 + (TA)n Simple_repeat Simple_repeat 1 72 0 325 249 0 10 chr12 127393068 127393170 -16393285 + L1MC4 LINE L1 1995 6983 -1339 1426 197 118 11 chr12 127393171 127393551 -16392904 + MLT1C LTR MaLR 45 465 -2 262 304 14 0 chr12 127393553 127393622 -16392833 - L2 LINE L2 -852 2462 2393 645 221 6 35 chr12 127393712 127393884 -16392571 - MER20 DNA MER1_type 0 219 53 2791 6 0 16 chr12 127393884 127394197 -16392258 + AluYb8 SINE Alu 1 308 -10 1676 162 39 84 chr12 127394226 127394388 -16392067 - MLT1A1 LTR MaLR 0 365 197 1664 172 0 4 chr12 127394388 127394655 -16391800 - AluJo SINE Alu -27 285 20 1676 162 39 84 chr12 127394655 127394874 -16391581 - MLT1A1 LTR MaLR -168 197 1 1878 151 17 0 chr12 127394926 127395224 -16391231 + AluSx SINE Alu 1 303 -9 994 84 22 22 chr12 127395229 127395407 -16391048 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 351 225 11 34 chr12 127395537 127395626 -16390829 + L2 LINE L2 3161 3247 -66 25 31 0 0 chr12 127395824 127395856 -16390599 + AT_rich Low_complexity Low_complexity 1 32 0 754 157 8 30 chr12 127395973 127396107 -16390348 + FLAM_C SINE Alu 1 131 -12 404 308 99 14 chr12 127396254 127396475 -16389980 + MIR SINE MIR 23 262 0 570 281 32 24 chr12 127396500 127396774 -16389681 - L1MC/D LINE L1 -357 5764 5524 1935 140 15 0 chr12 127398008 127398303 -16388152 - AluSg SINE Alu 0 304 6 223 290 143 2 chr12 127398493 127398590 -16387865 + MIR SINE MIR 36 143 -65 354 280 28 0 chr12 127398705 127398812 -16387643 - MIR SINE MIR -6 256 147 304 318 75 0 chr12 127398909 127399016 -16387439 - L2 LINE L2 0 3313 3199 651 111 0 0 chr12 127399023 127399113 -16387342 + 5S rRNA rRNA 1 90 -31 236 311 40 47 chr12 127399248 127399396 -16387059 - L2 LINE L2 -233 3039 2893 1772 168 42 8 chr12 127400403 127400761 -16385694 - L1MB3 LINE L1 -2 6181 5812 324 70 0 0 chr12 127400924 127400967 -16385488 + (CA)n Simple_repeat Simple_repeat 2 44 0 1493 153 37 0 chr12 127400967 127401235 -16385220 - L1MB3 LINE L1 -378 5793 5516 288 297 8 17 chr12 127401656 127401774 -16384681 - L1MEd LINE L1 -5555 564 448 1469 126 14 10 chr12 127401812 127402019 -16384436 - AluJo SINE Alu -20 292 85 1169 282 31 16 chr12 127402104 127402491 -16383964 + LTR16C LTR ERVL 97 489 -2 397 373 28 51 chr12 127402547 127402802 -16383653 - L1MEd LINE L1 -5768 351 103 1261 216 40 123 chr12 127402911 127403521 -16382934 - L2 LINE L2 -52 3261 2711 3002 157 15 9 chr12 127403521 127404055 -16382400 + L1PB4 LINE L1 5617 6153 -3 1296 152 28 48 chr12 127404057 127404307 -16382148 + AluJo SINE Alu 65 309 -3 1311 317 91 34 chr12 127404324 127405148 -16381307 - L2 LINE L2 -104 3168 2213 308 261 80 51 chr12 127405693 127405831 -16380624 + MIR3 SINE MIR 10 151 -57 613 289 59 56 chr12 127405831 127406124 -16380331 + L1M4 LINE L1 3373 3669 -2477 2391 75 14 0 chr12 127406124 127406417 -16380038 - AluY SINE Alu -14 297 1 613 289 59 56 chr12 127406417 127406532 -16379923 + L1M4 LINE L1 3669 3782 -2364 404 256 116 0 chr12 127406581 127406710 -16379745 - MER117 DNA MER1_type -49 148 5 256 312 40 32 chr12 127406888 127407013 -16379442 + L2 LINE L2 3188 3313 0 963 315 110 50 chr12 127407148 127408171 -16378284 + L2 LINE L2 2214 3270 -2 216 0 0 0 chr12 127408175 127408199 -16378256 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 808 197 82 0 chr12 127408229 127408412 -16378043 - MER20 DNA MER1_type -1 218 21 517 144 154 0 chr12 127408448 127408552 -16377903 - MER20 DNA MER1_type -24 195 76 347 226 12 0 chr12 127408867 127408951 -16377504 + MLT1I LTR MaLR 307 391 -18 345 322 25 0 chr12 127409240 127409358 -16377097 + L2 LINE L2 3193 3313 0 297 196 97 103 chr12 127409463 127409646 -16376809 + MLT1I LTR MaLR 185 340 -69 1097 138 81 48 chr12 127409646 127409856 -16376599 + MER20 DNA MER1_type 2 218 -1 297 196 97 103 chr12 127409856 127409922 -16376533 + MLT1I LTR MaLR 340 405 -4 946 194 65 37 chr12 127410153 127410370 -16376085 + MER58A DNA MER1_type 2 224 0 729 265 85 0 chr12 127410376 127410576 -16375879 + MIR SINE MIR 46 262 0 228 286 88 0 chr12 127411196 127411287 -16375168 - MIR SINE MIR -70 192 94 429 219 61 18 chr12 127411397 127411511 -16374944 + L2 LINE L2 3195 3313 0 215 354 94 0 chr12 127411516 127411612 -16374843 + L2 LINE L2 2928 3032 -240 375 226 212 7 chr12 127411616 127411753 -16374702 - LTR33A LTR ERVL -4 519 404 1770 265 69 22 chr12 127411756 127412260 -16374195 - MLT1E LTR MaLR 0 593 66 7413 173 154 25 chr12 127412260 127413814 -16372641 + MER52A LTR ERV1 1 1755 0 271 294 0 0 chr12 127413816 127413884 -16372571 - MLT1E LTR MaLR -474 68 1 538 224 75 5 chr12 127413885 127414090 -16372365 - LTR50 LTR ERVL -168 627 328 239 236 170 44 chr12 127414122 127414153 -16372302 - LTR50 LTR ERVL -589 206 180 2664 143 42 7 chr12 127414153 127414602 -16371853 + MLT1C LTR MaLR 3 467 0 239 236 170 44 chr12 127414602 127414752 -16371703 - LTR50 LTR ERVL -615 180 2 535 263 15 0 chr12 127414868 127415001 -16371454 + L2 LINE L2 3178 3312 -1 556 289 19 19 chr12 127415069 127415228 -16371227 - MIR SINE MIR -53 209 51 317 321 66 29 chr12 127415690 127415827 -16370628 - L2 LINE L2 -4 3268 3127 394 205 0 0 chr12 127416014 127416092 -16370363 - MIR SINE MIR -114 148 71 2054 57 14 21 chr12 127416173 127416422 -16370033 - L1MA2 LINE L1 0 6304 6056 2137 122 10 0 chr12 127416422 127416716 -16369739 - AluSp SINE Alu -16 297 1 2054 57 14 21 chr12 127416716 127416745 -16369710 - L1MA2 LINE L1 -248 6056 6028 344 300 23 15 chr12 127416814 127416944 -16369511 - L2 LINE L2 -208 3064 2934 243 296 197 0 chr12 127417584 127417716 -16368739 + MIR SINE MIR 105 262 0 1185 266 52 56 chr12 127417757 127418200 -16368255 - LTR16A1 LTR ERVL -2 455 15 513 282 21 0 chr12 127418860 127419002 -16367453 - MIR SINE MIR -115 147 3 267 54 0 0 chr12 127419023 127419060 -16367395 - L1MA3 LINE L1 0 6305 6269 527 341 41 0 chr12 127419065 127419285 -16367170 + L2 LINE L2 2430 2658 -656 274 192 0 0 chr12 127419304 127419356 -16367099 + L2 LINE L2 3258 3309 -4 367 307 12 94 chr12 127419603 127419847 -16366608 + L2 LINE L2 2868 3091 -181 34 65 0 0 chr12 127420000 127420062 -16366393 + AT_rich Low_complexity Low_complexity 1 62 0 736 159 0 45 chr12 127420064 127420196 -16366259 - FLAM_C SINE Alu -7 126 1 201 94 0 0 chr12 127421474 127421506 -16364949 + (TG)n Simple_repeat Simple_repeat 1 32 0 316 40 40 0 chr12 127421506 127421556 -16364899 + (GA)n Simple_repeat Simple_repeat 2 53 0 445 293 53 22 chr12 127421622 127421847 -16364608 - MIR SINE MIR -28 234 3 415 236 89 8 chr12 127421949 127422072 -16364383 + MIR SINE MIR 68 200 -62 255 152 0 0 chr12 127422072 127422118 -16364337 + GA-rich Low_complexity Low_complexity 1 46 0 294 309 0 10 chr12 127422157 127422254 -16364201 - MIR SINE MIR -14 248 153 270 298 125 88 chr12 127422270 127422589 -16363866 - L2 LINE L2 -2 3270 2940 274 254 99 42 chr12 127422847 127422905 -16363550 + MER117 DNA MER1_type 1 54 -143 2601 96 25 0 chr12 127422905 127423260 -16363195 + THE1B LTR MaLR 1 364 0 274 254 99 42 chr12 127423260 127423343 -16363112 + MER117 DNA MER1_type 54 150 -47 1207 230 72 0 chr12 127423900 127424165 -16362290 + AluJb SINE Alu 1 284 -28 536 29 14 0 chr12 127424165 127424235 -16362220 + (GA)n Simple_repeat Simple_repeat 2 72 0 249 103 0 0 chr12 127424420 127424462 -16361993 - MIR SINE MIR -59 149 114 227 263 105 53 chr12 127425139 127425291 -16361164 - MIR SINE MIR -56 206 47 319 283 69 7 chr12 127425375 127425520 -16360935 - L1ME4a LINE L1 -6 6115 5962 283 277 55 79 chr12 127425745 127425998 -16360457 - L2 LINE L2 -2 3311 3065 4804 138 19 1 chr12 127426014 127426794 -16359661 - L1MA5 LINE L1 -2 6298 5505 1179 310 75 28 chr12 127426928 127427515 -16358940 - L2 LINE L2 -446 2868 2246 1530 220 7 0 chr12 127427515 127427810 -16358645 + AluJo SINE Alu 1 297 -15 1179 310 75 28 chr12 127427810 127427874 -16358581 - L2 LINE L2 -1068 2246 2186 280 289 171 0 chr12 127428828 127428970 -16357485 + MER5B DNA MER1_type 20 172 -6 301 156 104 0 chr12 127429170 127429247 -16357208 + MER5A DNA MER1_type 26 110 -79 432 245 145 63 chr12 127429697 127429856 -16356599 - MER5A DNA MER1_type -6 183 12 421 285 22 29 chr12 127429867 127430021 -16356434 + MER5B DNA MER1_type 36 178 0 754 201 6 6 chr12 127430061 127430240 -16356215 + CT-rich Low_complexity Low_complexity 1 179 0 3486 139 5 18 chr12 127431050 127431150 -16355305 - L1MB7 LINE L1 -34 6150 6051 2439 226 88 25 chr12 127431150 127431953 -16354502 - L1MD1 LINE L1 -171 6071 5201 1076 166 0 0 chr12 127431953 127432122 -16354333 - AluJb SINE Alu -7 305 137 3031 222 24 9 chr12 127432128 127432872 -16353583 - L1MD1 LINE L1 -946 5200 4446 419 294 34 0 chr12 127432996 127433115 -16353340 + LTR16A LTR ERVL 1 123 -327 333 305 80 25 chr12 127433234 127433473 -16352982 + LTR16A LTR ERVL 196 447 -3 190 324 49 10 chr12 127433680 127433782 -16352673 + L3 LINE CR1 1089 1194 -383 205 303 0 0 chr12 127433813 127433879 -16352576 - L2 LINE L2 -425 2889 2824 352 147 44 15 chr12 127433936 127434004 -16352451 + L2 LINE L2 2989 3058 -214 193 340 10 29 chr12 127434079 127434182 -16352273 + L2 LINE L2 3208 3308 -5 259 315 18 27 chr12 127434893 127435004 -16351451 + MER5B DNA MER1_type 69 178 0 246 200 0 0 chr12 127435022 127435062 -16351393 + C-rich Low_complexity Low_complexity 1 40 0 680 176 17 11 chr12 127435062 127435238 -16351217 + CT-rich Low_complexity Low_complexity 2 178 0 747 289 43 46 chr12 127435782 127435903 -16350552 - MLT1K LTR MaLR -163 425 305 2028 133 10 7 chr12 127435903 127436203 -16350252 + AluSq SINE Alu 8 308 -5 747 289 43 46 chr12 127436203 127436406 -16350049 - MLT1K LTR MaLR -283 305 102 262 275 12 0 chr12 127436919 127436999 -16349456 + L2 LINE L2 2709 2789 -525 271 327 10 10 chr12 127437410 127437511 -16348944 + L2 LINE L2 3199 3299 -14 207 0 0 0 chr12 127437512 127437535 -16348920 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 813 145 0 0 chr12 127437628 127437745 -16348710 + FLAM_C SINE Alu 9 125 -18 216 302 172 18 chr12 127438827 127438996 -16347459 + MIR SINE MIR 8 202 -60 539 215 135 25 chr12 127439087 127439250 -16347205 + MIR SINE MIR 50 230 -32 238 176 44 29 chr12 127439930 127439998 -16346457 + MIR SINE MIR 109 177 -85 449 290 34 23 chr12 127440118 127440294 -16346161 + MIR SINE MIR 3 180 -82 649 323 19 19 chr12 127440986 127441246 -16345209 + MIR SINE MIR 2 261 -1 329 249 29 18 chr12 127441967 127442099 -16344356 + MIR SINE MIR 1 131 -77 292 300 25 8 chr12 127443005 127443125 -16343330 - L1ME3A LINE L1 -89 6081 5960 747 246 93 71 chr12 127443183 127443398 -16343057 - L1ME3A LINE L1 -214 5956 5747 4103 182 65 23 chr12 127443398 127444222 -16342233 + MER21B LTR ERV1 1 859 -4 747 246 93 71 chr12 127444222 127444628 -16341827 - L1ME3A LINE L1 -423 5747 5321 210 324 15 0 chr12 127445102 127445170 -16341285 - L2 LINE L2 0 3313 3245 341 256 12 0 chr12 127445188 127445274 -16341181 + L2 LINE L2 2394 2480 -834 842 179 16 17 chr12 127445291 127445506 -16340949 + L1ME1 LINE L1 5685 5898 -264 555 85 0 0 chr12 127445986 127446068 -16340387 + (TCC)n Simple_repeat Simple_repeat 1 82 0 2144 120 3 0 chr12 127446068 127446352 -16340103 - AluSx SINE Alu -27 285 1 332 234 53 0 chr12 127446352 127446446 -16340009 + L2 LINE L2 2657 2755 -559 778 62 18 0 chr12 127446546 127446659 -16339796 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 2181 96 0 18 chr12 127446662 127446943 -16339512 - AluSc SINE Alu -33 276 1 291 300 36 27 chr12 127447071 127447181 -16339274 - L2 LINE L2 -186 3086 2976 194 379 23 23 chr12 127447530 127447662 -16338793 + MER5B DNA MER1_type 2 133 -45 1726 170 17 7 chr12 127447896 127448185 -16338270 + AluJo SINE Alu 1 292 -20 418 264 63 91 chr12 127448278 127448532 -16337923 + L2 LINE L2 2918 3164 -149 285 288 55 0 chr12 127448793 127448866 -16337589 + L2 LINE L2 3158 3234 -38 685 295 112 33 chr12 127449367 127449733 -16336722 - LTR16C LTR ERVL -1 490 96 272 250 80 23 chr12 127450910 127450998 -16335457 + MIR SINE MIR 43 135 -73 294 98 0 0 chr12 127451225 127451266 -16335189 + MADE1 DNA Mariner 40 80 0 2400 89 0 7 chr12 127451523 127451827 -16334628 - AluSg SINE Alu -8 302 1 1409 171 79 4 chr12 127452037 127452289 -16334166 + LTR26B LTR ERV1 261 531 0 278 220 45 135 chr12 127452289 127452488 -16333967 - LTR16C LTR ERVL -309 182 2 2159 103 17 7 chr12 127452591 127452892 -16333563 + AluSx SINE Alu 1 304 -8 2084 164 54 54 chr12 127453116 127453188 -16333267 - MSTA LTR MaLR 0 428 357 2288 107 10 0 chr12 127453188 127453496 -16332959 + AluSx SINE Alu 1 311 -1 2084 164 54 54 chr12 127453496 127453851 -16332604 - MSTA LTR MaLR -70 358 1 182 214 0 24 chr12 127454394 127454436 -16332019 + MIR SINE MIR 221 261 -1 389 327 48 12 chr12 127454455 127454620 -16331835 + MIR SINE MIR 15 185 -77 198 0 0 0 chr12 127454669 127454691 -16331764 + (ATG)n Simple_repeat Simple_repeat 2 23 0 789 222 134 29 chr12 127504706 127505012 -16281443 - MER113 DNA MER1_type? -93 428 91 1863 230 57 78 chr12 127505014 127505846 -16280609 - L1MC5 LINE L1 -36 7925 7112 461 310 0 0 chr12 127505996 127506109 -16280346 - MER81 DNA DNA -1 113 1 186 103 0 0 chr12 127506602 127506631 -16279824 + (TAA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr12 127506640 127506669 -16279786 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2761 125 0 3 chr12 127506669 127507061 -16279394 - L1PB1 LINE L1 -10 6141 5751 10767 92 11 1 chr12 127507164 127508647 -16277808 - L1PB1 LINE L1 -763 5383 3886 590 245 71 46 chr12 127508969 127509165 -16277290 + MIR3 SINE MIR 5 205 -3 307 300 36 55 chr12 127509757 127509867 -16276588 - MIR SINE MIR -71 191 84 355 295 48 53 chr12 127510557 127510930 -16275525 - MLT1I LTR MaLR -6 403 36 441 282 81 11 chr12 127511050 127511224 -16275231 - MIR SINE MIR 0 262 77 1931 162 0 0 chr12 127511226 127511523 -16274932 + AluJb SINE Alu 5 301 -11 516 227 65 39 chr12 127511735 127511889 -16274566 + MER117 DNA MER1_type 1 158 -39 329 219 49 73 chr12 127512146 127512269 -16274186 + L2 LINE L2 3149 3268 -4 695 270 86 13 chr12 127512317 127512550 -16273905 - MIR SINE MIR 0 262 13 244 305 49 0 chr12 127512552 127512634 -16273821 - MIR SINE MIR -3 259 174 1361 104 0 21 chr12 127512678 127512871 -16273584 + AluSg/x SINE Alu 103 291 -21 495 294 0 0 chr12 127512872 127512991 -16273464 - MIR SINE MIR -116 146 28 960 110 55 0 chr12 127513253 127513399 -16273056 - L1MA10 LINE L1 -7 6327 6174 271 333 31 37 chr12 127513464 127513626 -16272829 + L2 LINE L2 3147 3307 -6 1834 168 0 20 chr12 127513652 127513956 -16272499 + AluJo SINE Alu 1 298 -14 1222 296 85 24 chr12 127514002 127514247 -16272208 - MLT1K LTR MaLR -47 541 312 2062 135 26 37 chr12 127514247 127514626 -16271829 - THE1C LTR MaLR 0 375 1 1222 296 85 24 chr12 127514626 127514887 -16271568 - MLT1K LTR MaLR -276 312 4 287 315 33 22 chr12 127515599 127515691 -16270764 + MLT1K LTR MaLR 141 233 -355 324 300 77 23 chr12 127516094 127516314 -16270141 + L2 LINE L2 2625 2856 -458 456 161 0 12 chr12 127516374 127516455 -16270000 - MLT1A1 LTR MaLR 0 365 286 2190 92 7 3 chr12 127516830 127517146 -16269309 + AluSx SINE Alu 1 317 0 213 310 56 0 chr12 127517643 127517714 -16268741 - MIR SINE MIR -89 119 45 1542 94 0 5 chr12 127517922 127518124 -16268331 + AluY SINE Alu 99 299 -12 224 370 41 27 chr12 127518314 127518460 -16267995 - MIR SINE MIR -11 251 104 209 288 8 110 chr12 127518664 127518782 -16267673 - MER5B DNA MER1_type -1 177 72 1071 137 0 0 chr12 127519444 127519780 -16266675 + (ATG)n Simple_repeat Simple_repeat 1 336 0 271 313 61 17 chr12 127520690 127520805 -16265650 + L2 LINE L2 3153 3272 0 625 231 174 5 chr12 127521055 127521250 -16265205 - MIR SINE MIR -33 229 2 193 258 43 43 chr12 127521523 127521616 -16264839 - L2 LINE L2 -270 3002 2910 521 266 62 68 chr12 127522750 127523073 -16263382 + L2 LINE L2 2988 3308 -5 244 339 30 18 chr12 127523355 127523520 -16262935 + L2 LINE L2 2914 3080 -192 3196 65 32 35 chr12 127523698 127524159 -16262296 + L1PA10 LINE L1 5707 6166 -2 426 108 0 0 chr12 127524336 127524401 -16262054 + (CA)n Simple_repeat Simple_repeat 2 66 0 2229 96 3 7 chr12 127524457 127524759 -16261696 - AluSp SINE Alu -12 301 1 214 286 22 33 chr12 127524975 127525066 -16261389 - MIR3 SINE MIR -14 194 105 443 297 32 27 chr12 127525189 127525374 -16261081 + MIR SINE MIR 77 262 0 774 238 108 9 chr12 127525456 127525687 -16260768 + MIR SINE MIR 9 262 0 305 211 95 12 chr12 127525713 127525819 -16260636 - MIR SINE MIR -70 138 28 761 207 0 6 chr12 127526135 127526314 -16260141 + (ATG)n Simple_repeat Simple_repeat 2 179 0 742 270 25 10 chr12 127526329 127526533 -16259922 - MIR SINE MIR 0 262 56 265 254 90 15 chr12 127526540 127526674 -16259781 + MIR3 SINE MIR 2 145 -63 454 304 70 6 chr12 127527327 127527498 -16258957 - MER5A DNA MER1_type -6 183 2 680 253 62 10 chr12 127527499 127527716 -16258739 + MIR SINE MIR 31 261 -1 343 243 40 87 chr12 127527739 127527912 -16258543 + MIR SINE MIR 92 256 -6 1908 148 3 32 chr12 127528771 127529082 -16257373 + AluJo SINE Alu 1 302 -10 337 298 70 54 chr12 127529347 127529589 -16256866 - L2 LINE L2 -448 2866 2621 8455 59 2 0 chr12 127530158 127532003 -16254452 + L1PA6 LINE L1 4302 6154 0 1923 120 0 0 chr12 127532055 127532321 -16254134 + AluSc SINE Alu 35 300 -9 376 241 135 7 chr12 127532707 127532848 -16253607 + MIR SINE MIR 47 205 -57 190 288 0 17 chr12 127533552 127533611 -16252844 + L2 LINE L2 3215 3272 0 329 208 42 0 chr12 127534112 127534184 -16252271 + L2 LINE L2 3238 3312 -1 1043 199 79 108 chr12 127534684 127535237 -16251218 - L1MC5 LINE L1 -832 6976 6531 258 32 0 0 chr12 127535344 127535375 -16251080 + (CA)n Simple_repeat Simple_repeat 2 32 0 339 233 126 31 chr12 127535516 127535675 -16250780 - L1MC4a LINE L1 -1579 6229 6056 402 21 0 0 chr12 127536113 127536160 -16250295 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 218 36 36 chr12 127536677 127536732 -16249723 - MIR SINE MIR -49 213 159 205 239 28 42 chr12 127537059 127537130 -16249325 + MIR3 SINE MIR 87 156 -52 310 286 0 24 chr12 127537132 127537216 -16249239 + Charlie8 DNA MER1_type 1 82 -2335 612 324 21 17 chr12 127537435 127537676 -16248779 - MIR SINE MIR -6 256 15 2308 96 0 0 chr12 127537710 127538023 -16248432 + AluSx SINE Alu 1 313 0 6171 114 2 2 chr12 127538316 127539229 -16247226 + L1P LINE L1 2951 3863 -2283 266 304 43 0 chr12 127539660 127539752 -16246703 - L2 LINE L2 -10 3303 3208 251 310 122 28 chr12 127539870 127539987 -16246468 - L2 LINE L2 -271 3001 2896 654 234 10 102 chr12 127539987 127540192 -16246263 + MER5A DNA MER1_type 3 188 -1 251 310 122 28 chr12 127540192 127540347 -16246108 - L2 LINE L2 -376 2896 2702 652 309 100 28 chr12 127540358 127540747 -16245708 + L2 LINE L2 2896 3312 -1 1859 168 0 13 chr12 127541628 127541943 -16244512 + AluJb SINE Alu 1 311 -1 2219 151 22 3 chr12 127542830 127543187 -16243268 + THE1B LTR MaLR 1 364 0 279 284 28 28 chr12 127543206 127543315 -16243140 + MIR3 SINE MIR 50 158 -50 265 256 132 47 chr12 127543319 127543448 -16243007 + MER5A DNA MER1_type 17 156 -33 420 302 62 76 chr12 127543600 127544020 -16242435 + MLT1K LTR MaLR 155 568 -20 231 309 59 0 chr12 127544029 127544097 -16242358 - MIR SINE MIR -190 72 1 193 183 17 67 chr12 127544330 127544390 -16242065 + L2 LINE L2 3163 3219 -94 2060 132 0 3 chr12 127544421 127544709 -16241746 + AluSx SINE Alu 1 287 -25 29 0 0 0 chr12 127544715 127544744 -16241711 + AT_rich Low_complexity Low_complexity 1 29 0 576 265 41 76 chr12 127545507 127545871 -16240584 + Charlie8 DNA MER1_type 17 347 -2070 220 296 82 41 chr12 127546811 127546909 -16239546 - MIR SINE MIR 0 262 161 2393 201 69 20 chr12 127546921 127547429 -16239026 - MLT1F LTR MaLR -9 533 1 405 242 52 72 chr12 127547432 127547585 -16238870 - MIR SINE MIR -111 151 2 211 216 0 0 chr12 127547687 127547724 -16238731 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 351 237 21 21 chr12 127547762 127547855 -16238600 - MIR SINE MIR -96 112 20 194 171 29 0 chr12 127547908 127547943 -16238512 - MIR SINE MIR -85 123 88 2627 141 21 7 chr12 127548107 127548525 -16237930 + MSTB LTR MaLR 3 426 0 992 129 29 6 chr12 127548555 127548726 -16237729 + L1MB3 LINE L1 6009 6183 0 229 307 34 23 chr12 127548787 127548875 -16237580 - MIR SINE MIR -74 134 46 413 305 55 6 chr12 127549842 127550006 -16236449 + MIR SINE MIR 14 185 -77 1441 266 54 14 chr12 127550449 127550877 -16235578 - LTR16A LTR ERVL -5 445 1 243 337 23 40 chr12 127551005 127551180 -16235275 - L1M4 LINE L1 -3589 2557 2386 367 372 105 21 chr12 127551492 127551874 -16234581 - HAL1b LINE L1 -687 661 248 318 391 8 0 chr12 127554228 127554361 -16232094 + MIR SINE MIR 21 154 -108 492 265 8 0 chr12 127554469 127554586 -16231869 - L2 LINE L2 -8 3264 3147 2592 36 0 23 chr12 127554654 127554957 -16231498 - AluY SINE Alu -15 296 1 21 0 0 0 chr12 127556025 127556046 -16230409 + AT_rich Low_complexity Low_complexity 1 21 0 226 313 111 0 chr12 127556144 127556243 -16230212 - L2 LINE L2 -19 3253 3144 505 295 58 47 chr12 127556662 127556920 -16229535 - MIR SINE MIR 0 262 2 1291 148 56 87 chr12 127557630 127558008 -16228447 + MER69 DNA AcHobo 2161 2526 0 192 200 75 0 chr12 127558420 127558460 -16227995 - MIR3 SINE MIR -54 154 112 933 190 6 11 chr12 127559147 127559326 -16227129 - MER5B DNA MER1_type 0 178 1 442 241 67 51 chr12 127559364 127559559 -16226896 + MIR SINE MIR 65 262 0 332 269 9 28 chr12 127559653 127559761 -16226694 + MIR SINE MIR 30 135 -73 219 250 18 0 chr12 127560256 127560312 -16226143 - MIR3 SINE MIR -137 71 15 348 265 51 17 chr12 127561510 127561627 -16224828 - MIR SINE MIR -69 139 19 224 286 96 111 chr12 127561743 127561942 -16224513 + MIR SINE MIR 48 243 -19 1532 142 146 4 chr12 127562003 127562271 -16224184 + AluJo SINE Alu 1 306 -6 201 196 0 0 chr12 127562932 127562983 -16223472 + (CA)n Simple_repeat Simple_repeat 2 52 0 441 298 77 0 chr12 127563408 127563576 -16222879 + MIR SINE MIR 18 198 -64 354 211 14 0 chr12 127563578 127563649 -16222806 - L2 LINE L2 0 3272 3201 225 135 0 0 chr12 127563905 127563942 -16222513 + L2 LINE L2 3217 3253 -19 2089 126 0 0 chr12 127563943 127564236 -16222219 - AluSx SINE Alu -19 293 1 660 289 89 38 chr12 127564370 127564857 -16221598 + L1MC4a LINE L1 5421 5818 -344 1349 145 0 27 chr12 127565168 127565389 -16221066 - MER20 DNA MER1_type -3 216 2 22 0 0 0 chr12 127565507 127565529 -16220926 + AT_rich Low_complexity Low_complexity 1 22 0 562 254 71 22 chr12 127565718 127565917 -16220538 + MIR SINE MIR 33 250 -12 251 364 0 17 chr12 127567131 127567249 -16219206 - MIR SINE MIR -115 147 32 624 280 26 26 chr12 127567487 127567755 -16218700 - L1MC4a LINE L1 -1921 5887 5620 361 282 102 28 chr12 127567915 127568131 -16218324 - L1MC4a LINE L1 -2322 5486 5255 371 291 26 32 chr12 127568832 127569021 -16217434 + L1MC4a LINE L1 5694 5881 -1927 266 311 84 43 chr12 127569071 127569393 -16217062 + L2 LINE L2 2474 2808 -506 446 255 15 54 chr12 127569418 127569622 -16216833 - L1MC4a LINE L1 -1908 5900 5705 276 354 68 0 chr12 127569627 127569774 -16216681 + L2 LINE L2 2897 3053 -219 1675 229 77 8 chr12 127569829 127570217 -16216238 + MLT1C LTR MaLR 53 467 0 234 91 0 0 chr12 127570338 127570371 -16216084 + (A)n Simple_repeat Simple_repeat 1 33 0 760 255 32 0 chr12 127570727 127570915 -16215540 + MIR SINE MIR 48 241 -21 185 284 86 12 chr12 127571021 127571102 -16215353 + L2 LINE L2 3227 3313 0 490 294 56 11 chr12 127571756 127571936 -16214519 + MIR SINE MIR 32 219 -43 649 187 55 36 chr12 127571939 127572112 -16214343 - LTR45B LTR ERV1 0 593 332 319 373 150 0 chr12 127573903 127574056 -16212399 - MER91A DNA MER1_type -3 193 18 237 299 13 0 chr12 127574113 127574190 -16212265 - MIR SINE MIR -56 152 75 2294 69 3 0 chr12 127575613 127575903 -16210552 - L1PA8A LINE L1 -250 5881 5591 1160 91 113 11 chr12 127575903 127576124 -16210331 + L1PA10 LINE L1 5954 6168 0 191 270 16 48 chr12 127576209 127576272 -16210183 - L2 LINE L2 -12 3301 3241 465 256 326 6 chr12 127576692 127577039 -16209416 - MLT1L LTR MaLR -59 556 99 458 338 14 9 chr12 127577494 127577707 -16208748 + L2 LINE L2 2681 2894 -420 230 260 51 51 chr12 127577917 127578094 -16208361 + L2 LINE L2 3118 3294 -19 346 304 50 75 chr12 127578224 127578425 -16208030 - MER91A DNA MER1_type 0 196 1 184 294 59 20 chr12 127578815 127578917 -16207538 - L2 LINE L2 -25 3288 3183 180 77 0 0 chr12 127579027 127579053 -16207402 + (TG)n Simple_repeat Simple_repeat 2 27 0 2243 90 4 0 chr12 127579336 127579647 -16206808 - AluSp SINE Alu 0 317 6 573 285 105 22 chr12 127579663 127579940 -16206515 - LTR16B LTR ERVL -59 405 106 241 245 0 0 chr12 127579974 127580023 -16206432 - LTR16B LTR ERVL -415 49 1 264 330 111 24 chr12 127580029 127580326 -16206129 - L2 LINE L2 -534 2780 2458 1824 143 48 7 chr12 127580452 127580745 -16205710 - AluSx SINE Alu -7 305 1 478 282 90 22 chr12 127580816 127581201 -16205254 + MLT1L LTR MaLR 142 587 -28 391 278 88 62 chr12 127581567 127581794 -16204661 - MIR SINE MIR -20 242 10 595 131 50 0 chr12 127581929 127582028 -16204427 - MER5A DNA MER1_type -1 188 85 263 296 21 48 chr12 127582752 127582941 -16203514 - L1MC4 LINE L1 -71 7957 7707 2273 109 0 10 chr12 127582949 127583282 -16203173 + AluSx SINE Alu 1 312 0 1747 168 3 40 chr12 127583461 127583782 -16202673 - AluJo SINE Alu -3 309 1 496 284 108 17 chr12 127583868 127584100 -16202355 + MIR SINE MIR 2 254 -8 186 205 0 0 chr12 127584198 127584237 -16202218 + MIR SINE MIR 110 148 -114 1015 195 4 58 chr12 127584426 127584652 -16201803 - MER20 DNA MER1_type -4 215 2 343 216 39 10 chr12 127584802 127584904 -16201551 + MIR SINE MIR 86 190 -72 655 274 119 25 chr12 127585061 127585346 -16201109 + MER102b DNA MER1_type 29 340 -1 452 303 80 6 chr12 127586392 127586567 -16199888 - MIR SINE MIR -74 188 1 319 379 9 0 chr12 127586627 127586743 -16199712 + L2 LINE L2 3155 3271 -1 942 148 7 0 chr12 127586884 127587026 -16199429 - MLT1B LTR MaLR 0 390 248 233 262 0 0 chr12 127587240 127587301 -16199154 - MLT1H LTR MaLR -13 536 476 1776 91 0 4 chr12 127587319 127587561 -16198894 - L1PB1 LINE L1 0 6151 5911 724 314 18 29 chr12 127587611 127587888 -16198567 - MLT1H LTR MaLR -225 324 51 223 314 52 20 chr12 127588121 127588261 -16198194 - MIR SINE MIR -61 147 30 328 336 35 14 chr12 127588479 127588622 -16197833 + MIR SINE MIR 12 157 -105 1985 123 25 0 chr12 127588631 127588908 -16197547 + AluSx SINE Alu 1 284 -28 930 287 101 17 chr12 127588951 127589563 -16196892 - L2 LINE L2 0 3313 2645 1916 163 60 83 chr12 127589614 127590013 -16196442 - MLT1B LTR MaLR 0 390 1 256 170 0 0 chr12 127590146 127590193 -16196262 - L2 LINE L2 -5 3308 3262 195 267 83 17 chr12 127590327 127590387 -16196068 - L2 LINE L2 -50 3222 3159 356 360 18 0 chr12 127590624 127590735 -16195720 + L2 LINE L2 3160 3272 0 735 118 32 164 chr12 127590760 127590980 -16195475 - MER3 DNA MER1_type 0 209 19 848 198 45 0 chr12 127590995 127591152 -16195303 + MER20 DNA MER1_type 1 164 -55 196 313 9 27 chr12 127591387 127591499 -16194956 + L3 LINE CR1 1301 1410 -167 398 248 17 17 chr12 127591599 127591716 -16194739 - MER103 DNA DNA -16 150 34 212 0 36 0 chr12 127592482 127592510 -16193945 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2437 74 0 3 chr12 127592512 127592811 -16193644 - AluY SINE Alu -13 298 1 1727 232 17 21 chr12 127592943 127593422 -16193033 - MER113 DNA MER1_type? -43 478 2 1869 169 0 3 chr12 127594695 127594985 -16191470 - AluSx SINE Alu -23 289 1 220 169 17 17 chr12 127595273 127595332 -16191123 + GA-rich Low_complexity Low_complexity 2 60 0 1051 258 116 64 chr12 127595837 127596353 -16190102 - MLT1H LTR MaLR 0 549 7 356 362 16 5 chr12 127597092 127597277 -16189178 - MIR SINE MIR -74 188 2 688 101 0 0 chr12 127597340 127597439 -16189016 - AluSp/q SINE Alu -1 312 214 22 0 0 0 chr12 127597744 127597766 -16188689 + AT_rich Low_complexity Low_complexity 1 22 0 1466 189 85 4 chr12 127597822 127598103 -16188352 - AluJo SINE Alu -7 305 2 336 250 21 0 chr12 127598107 127598203 -16188252 - L1MC5 LINE L1 -178 7783 7686 452 327 105 37 chr12 127598294 127598808 -16187647 - L2 LINE L2 -1239 2075 1527 205 293 17 0 chr12 127599060 127599118 -16187337 - L2 LINE L2 -336 2977 2919 1690 168 17 31 chr12 127599190 127599482 -16186973 + AluJo SINE Alu 7 294 -18 636 302 110 69 chr12 127599687 127600385 -16186070 + L2 LINE L2 2550 3271 -1 247 299 165 0 chr12 127601471 127601568 -16184887 - MIR SINE MIR -3 259 147 1867 143 0 40 chr12 127601687 127601987 -16184468 + AluJo SINE Alu 1 288 -24 283 306 9 28 chr12 127601996 127602104 -16184351 - MIR SINE MIR -148 114 9 305 235 72 18 chr12 127602851 127602989 -16183466 - MIR SINE MIR -62 146 3 2431 81 7 0 chr12 127603571 127603880 -16182575 - AluY SINE Alu 0 311 1 285 275 18 64 chr12 127604002 127604111 -16182344 + L2 LINE L2 3107 3210 -62 409 269 35 14 chr12 127604260 127604405 -16182050 - MIR SINE MIR -1 261 114 841 262 99 28 chr12 127604406 127604688 -16181767 + MLT1E LTR MaLR 1 302 -291 584 297 58 66 chr12 127604903 127605267 -16181188 + L2 LINE L2 2912 3272 0 378 213 96 0 chr12 127605680 127605774 -16180681 + MER5A DNA MER1_type 4 106 -83 482 283 40 12 chr12 127605823 127605996 -16180459 + MER5B DNA MER1_type 1 178 0 288 159 16 16 chr12 127606034 127606097 -16180358 - MIR SINE MIR -78 184 122 721 197 98 27 chr12 127606201 127606384 -16180071 + MLT1E LTR MaLR 398 593 0 305 306 45 27 chr12 127606384 127606495 -16179960 - MIR SINE MIR -148 114 2 276 282 28 49 chr12 127606495 127606634 -16179821 + MIR SINE MIR 127 262 0 790 234 72 14 chr12 127608065 127608274 -16178181 + MER58A DNA MER1_type 4 224 0 3407 113 4 2 chr12 127609761 127610257 -16176198 + L1PB2 LINE L1 5653 6149 -2 22 0 0 0 chr12 127610257 127610279 -16176176 + AT_rich Low_complexity Low_complexity 1 22 0 332 206 32 87 chr12 127610557 127610683 -16175772 - LTR67 LTR ERVL -1 556 438 318 382 45 6 chr12 127611467 127611624 -16174831 - L2 LINE L2 -8 3264 3102 724 266 25 12 chr12 127612496 127612740 -16173715 - MIR SINE MIR -13 249 3 1705 168 17 14 chr12 127612888 127613179 -16173276 + AluJo SINE Alu 1 292 -20 294 106 0 0 chr12 127613448 127613495 -16172960 + (TG)n Simple_repeat Simple_repeat 2 48 0 363 78 0 0 chr12 127613724 127613775 -16172680 + (TC)n Simple_repeat Simple_repeat 1 51 0 245 330 70 9 chr12 127613813 127613928 -16172527 - L2 LINE L2 -1 3271 3150 1856 142 0 8 chr12 127613945 127614213 -16172242 + AluSx SINE Alu 1 266 -46 950 224 17 21 chr12 127614337 127614574 -16171881 + MIR SINE MIR 6 241 -21 537 230 26 9 chr12 127615471 127615610 -16170845 + MIR SINE MIR 5 145 -63 472 280 51 109 chr12 127615610 127615921 -16170534 - MLT1I LTR MaLR 0 409 117 1671 279 37 32 chr12 127616879 127617711 -16168744 - L2 LINE L2 -1 3312 2474 419 268 58 29 chr12 127618631 127618769 -16167686 + MIR SINE MIR 5 146 -116 1837 142 0 53 chr12 127618838 127619156 -16167299 - AluSx SINE Alu -11 301 1 312 247 79 0 chr12 127619412 127619501 -16166954 + L1ME4a LINE L1 6026 6121 0 225 262 71 48 chr12 127619652 127619736 -16166719 + L2 LINE L2 3227 3312 -1 202 225 25 0 chr12 127619788 127619868 -16166587 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 203 235 0 15 chr12 127620624 127620692 -16165763 + CT-rich Low_complexity Low_complexity 1 67 0 654 289 4 69 chr12 127620693 127620819 -16165636 - MIR SINE MIR -3 259 156 2058 108 0 3 chr12 127620819 127621145 -16165310 - AluSx SINE Alu 0 325 1 654 289 4 69 chr12 127621145 127621277 -16165178 - MIR SINE MIR -106 156 17 731 262 81 63 chr12 127621336 127621607 -16164848 - Charlie8 DNA MER1_type -2141 276 1 750 262 91 0 chr12 127621797 127621984 -16164471 - MER3 DNA MER1_type 0 209 6 2064 110 0 0 chr12 127622058 127622363 -16164092 + AluSg SINE Alu 1 305 0 297 89 0 0 chr12 127623720 127623765 -16162690 + (TC)n Simple_repeat Simple_repeat 2 46 0 761 212 19 0 chr12 127623861 127624029 -16162426 - MIR SINE MIR -58 150 8 530 297 113 5 chr12 127624283 127624468 -16161987 + MIR SINE MIR 15 219 -43 257 372 25 88 chr12 127624540 127624814 -16161641 + L2 LINE L2 2895 3151 -121 271 59 20 20 chr12 127624872 127624923 -16161532 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2092 112 0 0 chr12 127624926 127625211 -16161244 - AluSx SINE Alu -27 285 1 1065 259 120 79 chr12 127625393 127625935 -16160520 - MLT1E LTR MaLR 0 567 4 2393 122 8 22 chr12 127626165 127626526 -16159929 - LTR45B LTR ERV1 -131 358 3 674 220 101 37 chr12 127627087 127627305 -16159150 + MIR SINE MIR 16 247 -15 192 77 0 0 chr12 127627316 127627342 -16159113 + (TTA)n Simple_repeat Simple_repeat 2 27 0 306 321 69 30 chr12 127628458 127628589 -16157866 - L2 LINE L2 -5 3308 3173 365 323 85 40 chr12 127628754 127628977 -16157478 - MIR SINE MIR -16 246 14 724 172 20 76 chr12 127629113 127629170 -16157285 - MER53 DNA DNA -1 188 129 2187 115 0 0 chr12 127629170 127629474 -16156981 - AluSx SINE Alu -8 304 1 724 172 20 76 chr12 127629474 127629614 -16156841 - MER53 DNA DNA -60 129 2 413 255 29 0 chr12 127630618 127630720 -16155735 - MIR SINE MIR -55 207 103 421 310 13 123 chr12 127631404 127631801 -16154654 - L2 LINE L2 -6 3266 2914 3408 95 42 8 chr12 127632201 127632729 -16153726 - L1MA2 LINE L1 0 6304 5759 823 250 68 30 chr12 127632730 127632966 -16153489 - MIR SINE MIR -5 257 13 1515 281 69 31 chr12 127633035 127633587 -16152868 - MLT1K LTR MaLR 0 588 16 199 290 51 94 chr12 127633647 127633829 -16152626 + MIR SINE MIR 36 205 -57 254 320 27 0 chr12 127634026 127634101 -16152354 - MIR SINE MIR -20 242 166 686 225 29 26 chr12 127634120 127634312 -16152143 + MIR SINE MIR 16 204 -58 590 317 68 34 chr12 127634922 127635419 -16151036 + L2 LINE L2 2752 3270 -2 229 356 44 38 chr12 127635428 127635588 -16150867 - MIR SINE MIR -82 180 20 4445 87 11 13 chr12 127635624 127636235 -16150220 - L1PA11 LINE L1 -2 6172 5563 192 143 0 20 chr12 127636377 127636426 -16150029 - L2 LINE L2 -291 2981 2934 204 163 0 61 chr12 127636469 127636518 -16149937 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 401 324 97 11 chr12 127636664 127636849 -16149606 - MIR SINE MIR 0 262 62 309 109 0 0 chr12 127637597 127637643 -16148812 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 273 323 167 10 chr12 127638404 127638500 -16147955 + MIR3 SINE MIR 87 197 -11 818 218 62 21 chr12 127640181 127640374 -16146081 - MER20 DNA MER1_type -14 205 5 3490 133 59 66 chr12 127640388 127641145 -16145310 - Tigger3(Golem) DNA MER2_type 0 3029 2278 530 238 10 0 chr12 127641136 127641237 -16145218 - Tigger3(Golem) DNA MER2_type -2921 108 7 * 736 284 47 9 chr12 127641238 127641449 -16145006 + MIR SINE MIR 37 255 -7 303 290 65 0 chr12 127641539 127641632 -16144823 - L2 LINE L2 -4 3268 3170 1232 274 43 20 chr12 127641723 127642121 -16144334 - MLT1I LTR MaLR -2 407 1 402 253 196 22 chr12 127642968 127643186 -16143269 + MIR SINE MIR 2 251 -11 741 261 20 53 chr12 127643422 127643667 -16142788 - MIR SINE MIR -13 249 13 1961 101 0 57 chr12 127643895 127644214 -16142241 + AluSg SINE Alu 1 302 0 564 164 0 0 chr12 127644226 127644336 -16142119 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 309 288 68 18 chr12 127644640 127644803 -16141652 - MIR SINE MIR 0 262 92 937 229 0 11 chr12 127644880 127645068 -16141387 + MER5A DNA MER1_type 4 189 0 231 205 87 168 chr12 127645229 127645551 -16140904 + L2 LINE L2 2587 2882 -432 470 303 49 0 chr12 127645616 127645738 -16140717 + L2 LINE L2 3171 3298 -15 2126 125 0 3 chr12 127645865 127646177 -16140278 + AluSx SINE Alu 1 311 -1 666 238 124 0 chr12 127646197 127646390 -16140065 + MIR SINE MIR 46 262 0 533 300 83 55 chr12 127646518 127646771 -16139684 + MIR SINE MIR 2 261 -1 397 284 6 74 chr12 127647661 127647823 -16138632 + MER5B DNA MER1_type 5 155 -23 239 286 0 16 chr12 127648334 127648397 -16138058 - Charlie8 DNA MER1_type 0 2417 2356 355 283 130 23 chr12 127648510 127648687 -16137768 - Charlie8 DNA MER1_type -2195 222 27 360 228 0 50 chr12 127648775 127648876 -16137579 - L2 LINE L2 -9 3263 3168 310 333 19 19 chr12 127649092 127649197 -16137258 - MIR SINE MIR -68 140 36 202 373 36 50 chr12 127649514 127649734 -16136721 + L2 LINE L2 3056 3272 0 472 245 33 30 chr12 127649779 127649969 -16136486 + MIR SINE MIR 5 238 -24 569 237 211 44 chr12 127650003 127650273 -16136182 - L1ME2 LINE L1 0 6164 5850 331 325 49 0 chr12 127650327 127650450 -16136005 + L2 LINE L2 3182 3310 -3 459 221 94 31 chr12 127650517 127650644 -16135811 + MIR SINE MIR 65 199 -63 410 303 117 21 chr12 127651291 127651479 -16134976 - MIR SINE MIR -46 216 11 466 198 33 182 chr12 127651712 127651817 -16134638 + MIR SINE MIR 39 158 -104 1685 145 11 18 chr12 127651817 127652128 -16134327 - AluSx SINE Alu 0 309 1 1467 177 3 40 chr12 127652136 127652435 -16134020 - AluJo SINE Alu -24 288 1 466 198 33 182 chr12 127652435 127652573 -16133882 + MIR SINE MIR 166 253 -9 332 267 31 118 chr12 127652702 127652897 -16133558 + MIR SINE MIR 85 262 0 228 232 141 10 chr12 127652912 127653011 -16133444 - MIR SINE MIR -61 201 90 333 265 56 66 chr12 127653058 127653212 -16133243 - MIR SINE MIR -45 163 16 1981 249 53 30 chr12 127653510 127654398 -16132057 - L2 LINE L2 -2 3311 2393 337 294 0 0 chr12 127655255 127655340 -16131115 + MIR SINE MIR 39 123 -85 352 317 0 0 chr12 127655771 127655853 -16130602 + L2 LINE L2 2976 3057 -215 1109 251 111 7 chr12 127655870 127656149 -16130306 + LTR16C LTR ERVL 170 477 -14 733 281 46 9 chr12 127656452 127656669 -16129786 - MIR SINE MIR -15 247 23 657 302 117 0 chr12 127657078 127657343 -16129112 - L2 LINE L2 -1 3271 2976 2179 95 0 7 chr12 127657374 127657678 -16128777 - AluSq SINE Alu -11 302 1 995 206 81 0 chr12 127657705 127657928 -16128527 - MIR SINE MIR -20 242 2 559 332 197 6 chr12 127657933 127658481 -16127974 - L2 LINE L2 -363 2951 2299 773 289 102 4 chr12 127659526 127659751 -16126704 + MIR SINE MIR 5 251 -11 554 328 33 0 chr12 127660327 127660510 -16125945 + MIR SINE MIR 63 251 -11 185 330 128 11 chr12 127660731 127660825 -16125630 - L3b LINE CR1 -11 1572 1468 314 258 145 16 chr12 127660950 127661074 -16125381 - MIR SINE MIR -38 224 85 290 292 8 33 chr12 127661181 127661301 -16125154 - L2 LINE L2 -237 3035 2919 475 306 117 33 chr12 127661344 127661570 -16124885 - MIR SINE MIR 0 262 3 513 168 0 0 chr12 127662210 127662317 -16124138 + (CAT)n Simple_repeat Simple_repeat 1 107 0 465 264 20 84 chr12 127662360 127662543 -16123912 - MIR SINE MIR -63 145 16 255 305 21 32 chr12 127662571 127662666 -16123789 + MIR SINE MIR 21 114 -148 225 83 0 0 chr12 127665204 127665240 -16121215 + (T)n Simple_repeat Simple_repeat 1 36 0 490 291 95 6 chr12 127667362 127667541 -16118914 + MIR SINE MIR 2 196 -66 391 331 24 8 chr12 127667993 127668120 -16118335 + MER94 DNA DNA 5 133 -1 24 53 0 0 chr12 127669440 127669478 -16116977 + AT_rich Low_complexity Low_complexity 1 38 0 629 296 85 5 chr12 127669606 127669829 -16116626 + MIR SINE MIR 8 248 -14 616 251 69 0 chr12 127670107 127670282 -16116173 + MIR SINE MIR 73 259 -3 814 172 30 30 chr12 127670431 127670629 -16115826 - L1MA5 LINE L1 0 6300 6103 872 248 90 6 chr12 127671254 127671646 -16114809 - L2 LINE L2 -71 3242 2791 492 340 5 0 chr12 127672568 127672756 -16113699 - MIR SINE MIR -26 236 48 201 301 24 24 chr12 127673005 127673088 -16113367 - MIR SINE MIR -110 98 16 356 327 52 61 chr12 127673225 127673359 -16113096 + L2 LINE L2 2637 2771 -501 1964 111 59 7 chr12 127673359 127673647 -16112808 - AluSx SINE Alu -7 305 3 356 327 52 61 chr12 127673647 127673965 -16112490 + L2 LINE L2 2771 3080 -192 336 247 52 0 chr12 127674289 127674386 -16112069 + L2 LINE L2 3208 3309 -4 488 257 0 14 chr12 127674524 127674664 -16111791 + Charlie7 DNA MER1_type 2475 2612 0 210 347 14 0 chr12 127674664 127674736 -16111719 - MIR3 SINE MIR -48 160 88 346 322 35 14 chr12 127675285 127675428 -16111027 - MIR3 SINE MIR -33 175 30 215 338 14 0 chr12 127675488 127675562 -16110893 - MIR SINE MIR -65 143 69 295 154 154 8 chr12 127675577 127675674 -16110781 - MIR SINE MIR -41 221 108 294 231 49 32 chr12 127676210 127676332 -16110123 - MIR SINE MIR -23 185 68 1922 164 0 27 chr12 127676401 127676730 -16109725 + 7SLRNA srpRNA srpRNA 1 320 0 453 282 8 0 chr12 127677178 127677302 -16109153 + MIR SINE MIR 29 153 -109 344 285 146 7 chr12 127677456 127677600 -16108855 - MIR3 SINE MIR -36 172 9 672 284 14 0 chr12 127677661 127677879 -16108576 - MIR SINE MIR -10 252 34 239 231 37 0 chr12 127678315 127678423 -16108032 + (TCCA)n Simple_repeat Simple_repeat 2 113 0 261 365 16 0 chr12 127678466 127678592 -16107863 + (TCCA)n Simple_repeat Simple_repeat 1 128 0 274 185 62 15 chr12 127679064 127679129 -16107326 - MIR SINE MIR -78 130 63 399 318 78 10 chr12 127679153 127679345 -16107110 - MIR SINE MIR -38 224 20 540 306 18 6 chr12 127680341 127680511 -16105944 - MIR SINE MIR -89 173 2 279 0 0 0 chr12 127680813 127680844 -16105611 + (A)n Simple_repeat Simple_repeat 1 31 0 729 265 0 18 chr12 127680853 127681023 -16105432 + MER117 DNA MER1_type 29 195 -2 241 280 0 13 chr12 127681162 127681237 -16105218 - MIR SINE MIR -65 143 70 235 289 13 13 chr12 127681361 127681437 -16105018 + L2 LINE L2 3184 3259 -13 395 263 226 16 chr12 127682161 127682351 -16104104 - MIR SINE MIR -30 232 3 237 245 0 0 chr12 127682664 127682717 -16103738 + MIR SINE MIR 101 153 -109 1386 68 6 0 chr12 127732842 127733019 -16053436 - AluSc SINE Alu -131 178 1 985 191 83 0 chr12 127733027 127733231 -16053224 + MSTD LTR MaLR 176 396 0 281 197 15 30 chr12 127733326 127733392 -16053063 - MLT1K LTR MaLR -327 261 197 466 303 69 37 chr12 127733505 127733693 -16052762 + MER91A DNA MER1_type 1 194 -2 322 241 46 0 chr12 127733729 127733816 -16052639 - MIR SINE MIR -91 171 81 1693 131 71 7 chr12 127733835 127734118 -16052337 - MER44D DNA MER2_type -38 571 1 308 253 15 23 chr12 127734119 127734201 -16052254 - MIR SINE MIR -123 85 7 299 146 0 36 chr12 127734782 127734837 -16051618 + LTR67 LTR ERVL 19 71 -486 1955 152 184 16 chr12 127734919 127735359 -16051096 - L1MC1 LINE L1 -2 6331 5818 183 161 0 0 chr12 127735433 127735464 -16050991 - MIR SINE MIR -108 154 124 299 246 26 161 chr12 127735577 127735783 -16050672 + MIR SINE MIR 17 249 -13 1979 125 0 0 chr12 127735783 127736063 -16050392 + AluSx SINE Alu 1 280 -32 1168 35 35 0 chr12 127736064 127736233 -16050222 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 299 246 26 161 chr12 127736233 127736307 -16050148 + MIR SINE MIR 248 262 0 839 261 67 42 chr12 127737169 127737533 -16048922 - MLT1K LTR MaLR -3 585 150 1995 116 6 13 chr12 127737533 127737844 -16048611 - AluSx SINE Alu -2 310 2 839 261 67 42 chr12 127737844 127737987 -16048468 - MLT1K LTR MaLR -438 150 12 358 205 0 26 chr12 127738093 127738171 -16048284 + MLT1C LTR MaLR 1 76 -314 2791 124 94 15 chr12 127738197 127738655 -16047800 - MER21A LTR ERV1 -6 925 432 1882 133 6 30 chr12 127738655 127739009 -16047446 - MER4A LTR ERV1 0 664 261 580 121 20 30 chr12 127739009 127739108 -16047347 - MER4A LTR ERV1 -566 98 1 * 1130 185 89 27 chr12 127739108 127739409 -16047046 - MER21A LTR ERV1 -496 435 1 2752 169 21 76 chr12 127739409 127739977 -16046478 + MLT2B3 LTR ERVL 18 554 0 1631 193 0 3 chr12 127740018 127740319 -16046136 + AluSx SINE Alu 6 305 -7 1304 167 217 20 chr12 127740327 127740627 -16045828 + MLT1C LTR MaLR 108 466 -1 1340 141 0 0 chr12 127741012 127741234 -16045221 - AluJo SINE Alu 0 307 86 490 254 68 116 chr12 127741240 127741431 -16045024 - L2 LINE L2 -12 3301 3102 2011 111 0 19 chr12 127741431 127741738 -16044717 + AluSx SINE Alu 1 301 -11 490 254 68 116 chr12 127741738 127741927 -16044528 - L2 LINE L2 -211 3102 2906 1809 167 115 115 chr12 127741927 127742128 -16044327 + MLT2B1 LTR ERVL 1 201 -319 1523 205 3 3 chr12 127742128 127742435 -16044020 + AluJb SINE Alu 1 307 -5 1809 167 115 115 chr12 127742435 127742471 -16043984 + MLT2B1 LTR ERVL 201 236 -284 468 51 0 0 chr12 127742471 127742530 -16043925 + (TC)n Simple_repeat Simple_repeat 2 60 0 1809 167 115 115 chr12 127742530 127742769 -16043686 + MLT2B1 LTR ERVL 236 481 -39 189 0 0 0 chr12 127742769 127742790 -16043665 + (GA)n Simple_repeat Simple_repeat 2 22 0 1809 167 115 115 chr12 127742790 127742831 -16043624 + MLT2B1 LTR ERVL 480 520 0 490 254 68 116 chr12 127742831 127742847 -16043608 - L2 LINE L2 -406 2907 2923 239 308 11 11 chr12 127743398 127743489 -16042966 + A-rich Low_complexity Low_complexity 3 93 0 1667 132 38 28 chr12 127743553 127743840 -16042615 + AluJb SINE Alu 1 290 -22 200 128 26 0 chr12 127743887 127743926 -16042529 + A-rich Low_complexity Low_complexity 2 41 0 423 324 27 36 chr12 127743926 127744145 -16042310 - MIR SINE MIR -28 234 18 1610 139 39 8 chr12 127744365 127744673 -16041782 + MLT2D LTR ERVL 1 352 -45 301 240 10 0 chr12 127744796 127744896 -16041559 + (TA)n Simple_repeat Simple_repeat 2 102 0 1397 212 128 92 chr12 127744951 127745147 -16041308 - MLT1G LTR MaLR -39 551 363 1912 160 0 3 chr12 127745147 127745460 -16040995 - AluJb SINE Alu 0 312 1 1397 212 128 92 chr12 127745460 127745472 -16040983 - MLT1G LTR MaLR -227 363 353 1891 114 7 0 chr12 127745472 127745745 -16040710 - AluSq SINE Alu -38 275 1 1397 212 128 92 chr12 127745745 127746067 -16040388 - MLT1G LTR MaLR -237 353 1 2573 179 11 7 chr12 127746137 127746602 -16039853 + MLT1C LTR MaLR 1 467 0 951 139 11 21 chr12 127746605 127746792 -16039663 - MER65A LTR ERV1 0 445 261 806 240 23 6 chr12 127746792 127746967 -16039488 + AluJb SINE Alu 134 311 -1 527 222 12 18 chr12 127746973 127747144 -16039311 + GA-rich Low_complexity Low_complexity 3 172 0 1437 151 96 8 chr12 127747145 127747396 -16039059 - MER65A LTR ERV1 -172 273 1 374 301 53 23 chr12 127747904 127748037 -16038418 + MIR3 SINE MIR 1 137 -71 769 242 37 21 chr12 127748382 127748572 -16037883 + MLT1K LTR MaLR 79 271 -317 1506 130 123 11 chr12 127748630 127748899 -16037556 + AluSg1 SINE Alu 1 299 -10 23 0 0 0 chr12 127748944 127748967 -16037488 + AT_rich Low_complexity Low_complexity 1 23 0 3103 111 20 0 chr12 127748967 127749417 -16037038 - L1PA16 LINE L1 -9 6157 5699 275 196 0 0 chr12 127749527 127749583 -16036872 + MLT1K LTR MaLR 529 584 -4 35 0 0 0 chr12 127750377 127750412 -16036043 + AT_rich Low_complexity Low_complexity 1 35 0 760 160 0 8 chr12 127750601 127750732 -16035723 + FLAM_A SINE Alu 6 135 -7 466 125 0 0 chr12 127750961 127751025 -16035430 + AluS SINE Alu 2 65 -245 312 297 10 40 chr12 127751702 127751803 -16034652 - L2 LINE L2 0 3272 3175 441 171 134 0 chr12 127751875 127751957 -16034498 - L2 LINE L2 -2 3311 3219 1803 191 17 9 chr12 127752406 127752751 -16033704 + MER74A LTR ERVL 204 551 -7 2181 119 7 0 chr12 127752751 127753061 -16033394 - AluSx SINE Alu 0 312 1 336 24 0 0 chr12 127753214 127753255 -16033200 + (CA)n Simple_repeat Simple_repeat 1 41 0 238 284 93 3 chr12 127753402 127753571 -16032884 - MIR SINE MIR 0 262 32 266 220 0 136 chr12 127753653 127753785 -16032670 + MIR SINE MIR 72 185 -77 189 121 0 0 chr12 127754039 127754072 -16032383 + (CA)n Simple_repeat Simple_repeat 1 33 0 467 164 240 0 chr12 127754226 127754330 -16032125 + MER103 DNA DNA 1 129 -37 1734 228 84 7 chr12 127754334 127754737 -16031718 - MLT1F LTR MaLR -9 533 100 21 0 0 0 chr12 127755231 127755252 -16031203 + AT_rich Low_complexity Low_complexity 1 21 0 2044 116 0 10 chr12 127755292 127755427 -16031028 + AluSx SINE Alu 1 136 -176 1949 124 0 0 chr12 127755427 127755754 -16030701 + AluSg SINE Alu 1 327 0 2044 116 0 10 chr12 127755754 127755910 -16030545 + AluSx SINE Alu 136 290 -22 1723 194 14 17 chr12 127756012 127756367 -16030088 + MLT1A1 LTR MaLR 1 354 -11 825 299 42 0 chr12 127756552 127756769 -16029686 + MIR SINE MIR 16 241 -21 362 269 28 58 chr12 127757055 127757255 -16029200 + MLT1K LTR MaLR 2 263 -325 195 100 0 0 chr12 127757517 127757547 -16028908 + (GA)n Simple_repeat Simple_repeat 1 30 0 281 243 14 0 chr12 127757591 127757661 -16028794 + MIR SINE MIR 44 114 -94 207 299 130 23 chr12 127757844 127758021 -16028434 + L2 LINE L2 2286 2481 -833 462 299 63 29 chr12 127758127 127758301 -16028154 - MIR SINE MIR -60 202 23 494 243 68 113 chr12 127758783 127758925 -16027530 + L2 LINE L2 2486 2633 -681 1844 159 0 7 chr12 127758925 127759221 -16027234 - AluSx SINE Alu -18 294 1 494 243 68 113 chr12 127759221 127759235 -16027220 + L2 LINE L2 2633 2646 -668 1877 170 27 15 chr12 127759235 127759636 -16026819 - L1MB4 LINE L1 -1 6179 5774 494 243 68 113 chr12 127759636 127759832 -16026623 + L2 LINE L2 2646 2823 -491 306 206 0 0 chr12 127759833 127759906 -16026549 + (CA)n Simple_repeat Simple_repeat 2 74 0 1281 281 71 51 chr12 127759922 127760413 -16026042 + L2 LINE L2 2813 3313 0 196 297 94 0 chr12 127760412 127760476 -16025979 + MIR SINE MIR 84 153 -109 * 406 189 28 38 chr12 127760638 127760744 -16025711 - MIR SINE MIR -110 152 48 2357 70 0 13 chr12 127760763 127761078 -16025377 - AluY SINE Alu 0 311 1 726 230 57 70 chr12 127761193 127761423 -16025032 - MIR SINE MIR 0 262 36 270 215 0 46 chr12 127762020 127762085 -16024370 - MIR SINE MIR -1 261 200 397 245 165 65 chr12 127762936 127763136 -16023319 + L1ME4a LINE L1 5877 6096 -25 23 0 0 0 chr12 127763300 127763323 -16023132 + AT_rich Low_complexity Low_complexity 1 23 0 416 281 31 8 chr12 127764370 127764498 -16021957 + MIR SINE MIR 44 174 -88 2128 105 3 3 chr12 127765533 127765828 -16020627 - AluSq SINE Alu -18 295 1 849 296 29 0 chr12 127765866 127766106 -16020349 + MIR SINE MIR 16 262 0 227 303 15 0 chr12 127766129 127766195 -16020260 + MIR SINE MIR 76 142 -66 2122 210 36 14 chr12 127766226 127766731 -16019724 + Charlie1b DNA MER1_type 7 522 -1 362 273 49 83 chr12 127766819 127767024 -16019431 - L2 LINE L2 0 3272 3075 2055 148 3 3 chr12 127767522 127767832 -16018623 - AluSx SINE Alu -2 310 1 385 188 12 12 chr12 127768079 127768159 -16018296 - MER116 DNA Mariner 0 80 1 233 213 0 0 chr12 127768162 127768209 -16018246 - MIR SINE MIR -107 155 109 185 88 29 0 chr12 127768226 127768244 -16018211 + (TGAA)n Simple_repeat Simple_repeat 3 19 -18 6898 105 33 33 chr12 127768244 127769315 -16017140 - MER11C LTR ERVK 0 1071 1 185 88 29 0 chr12 127769315 127769330 -16017125 + (TGAA)n Simple_repeat Simple_repeat 19 37 0 459 296 12 24 chr12 127769468 127769637 -16016818 - MIR SINE MIR -61 201 35 1304 201 82 42 chr12 127769725 127770078 -16016377 - MLT1A2 LTR MaLR 0 374 8 793 287 51 45 chr12 127770546 127771017 -16015438 - L1ME4a LINE L1 -47 6074 5601 2808 60 40 3 chr12 127771161 127771512 -16014943 - THE1B LTR MaLR 0 364 1 2918 217 64 14 chr12 127771597 127772285 -16014170 - HsTC2c DNA MER2_type -3 726 5 1993 150 3 7 chr12 127772521 127772827 -16013628 - AluJo SINE Alu -7 305 1 192 40 0 0 chr12 127772854 127772879 -16013576 + (GA)n Simple_repeat Simple_repeat 1 25 0 1825 142 51 181 chr12 127773106 127773359 -16013096 + L1MC2 LINE L1 5777 5898 -446 2462 101 20 3 chr12 127773359 127773715 -16012740 - L1PB2 LINE L1 -3 6148 5787 1825 142 51 181 chr12 127773715 127774103 -16012352 + L1MC2 LINE L1 5898 6335 -9 698 235 35 0 chr12 127774910 127775080 -16011375 + MIR SINE MIR 43 218 -44 1359 242 26 3 chr12 127775914 127776216 -16010239 + LTR16A LTR ERVL 134 442 -8 306 378 17 0 chr12 127776218 127776337 -16010118 + L2 LINE L2 2687 2807 -507 38 0 0 0 chr12 127776427 127776465 -16009990 + AT_rich Low_complexity Low_complexity 1 38 0 827 154 50 82 chr12 127776465 127776621 -16009834 - MER33 DNA MER1_type -2367 218 69 2363 91 3 0 chr12 127776621 127776918 -16009537 - AluSx SINE Alu -14 298 1 827 154 50 82 chr12 127776918 127776981 -16009474 - MER33 DNA MER1_type -2516 69 6 843 309 41 35 chr12 127776992 127777455 -16009000 + L2 LINE L2 2808 3273 -40 250 125 54 71 chr12 127778142 127778198 -16008257 - L2 LINE L2 -83 3230 3176 258 160 0 0 chr12 127778200 127778250 -16008205 + (CA)n Simple_repeat Simple_repeat 1 50 0 1285 104 74 56 chr12 127778250 127778319 -16008136 - Tigger5 DNA MER2_type 0 2323 2257 2486 87 0 0 chr12 127778319 127778631 -16007824 + AluSq SINE Alu 1 312 -1 1285 104 74 56 chr12 127778631 127778792 -16007663 - Tigger5 DNA MER2_type -66 2257 2089 222 245 0 0 chr12 127778809 127778858 -16007597 + (TA)n Simple_repeat Simple_repeat 1 49 0 865 252 78 20 chr12 127778858 127779323 -16007132 - L2 LINE L2 -157 3156 2646 1525 92 25 59 chr12 127779323 127779561 -16006894 - MER30 DNA MER1_type 0 230 1 865 252 78 20 chr12 127779561 127779613 -16006842 - L2 LINE L2 -667 2646 2599 679 267 86 59 chr12 127779705 127780079 -16006376 + MLT1J1 LTR MaLR 63 446 0 286 89 22 0 chr12 127780414 127780459 -16005996 - MADE1 DNA Mariner -34 46 1 471 204 6 28 chr12 127781606 127781787 -16004668 + CT-rich Low_complexity Low_complexity 3 179 0 1344 246 90 66 chr12 127782028 127782653 -16003802 + MLT2F LTR ERVL 5 644 -19 686 294 67 19 chr12 127782896 127783046 -16003409 + MER102b DNA MER1_type 5 146 -1282 1856 163 3 0 chr12 127783046 127783335 -16003120 + AluJb SINE Alu 1 290 -22 686 294 67 19 chr12 127783335 127783497 -16002958 + MER102b DNA MER1_type 146 332 -9 267 220 83 37 chr12 127783495 127783604 -16002851 + MLT1J LTR MaLR 396 509 -2 * 396 0 0 0 chr12 127784269 127784313 -16002142 + (TA)n Simple_repeat Simple_repeat 2 45 0 223 413 0 0 chr12 127785417 127785526 -16000929 + L2 LINE L2 2650 2758 -556 582 224 16 0 chr12 127785635 127785760 -16000695 - L2 LINE L2 0 3313 3187 295 148 37 0 chr12 127785774 127785828 -16000627 + L2 LINE L2 2998 3053 -219 430 254 32 24 chr12 127786437 127786563 -15999892 + MIR3 SINE MIR 52 178 -30 696 234 29 30 chr12 127786566 127786799 -15999656 + MIR SINE MIR 36 262 0 524 277 113 0 chr12 127786872 127787067 -15999388 - MIR SINE MIR 0 262 46 1462 236 62 25 chr12 127787086 127787123 -15999332 - L1MEc LINE L1 -5063 1333 1299 1692 121 18 109 chr12 127787123 127787461 -15998994 - AluJo SINE Alu -5 307 1 1462 236 62 25 chr12 127787461 127787940 -15998515 - L1MEc LINE L1 -5097 1299 798 274 200 18 182 chr12 127787941 127788051 -15998404 + MLT1K LTR MaLR 140 231 -357 721 256 45 21 chr12 127788150 127788392 -15998063 - MIR SINE MIR -12 250 3 408 167 0 39 chr12 127789423 127789501 -15996954 + MLT2B1 LTR ERVL 1 75 -339 324 93 0 0 chr12 127789603 127789646 -15996809 - Alu SINE Alu -258 43 1 1420 220 47 66 chr12 127789647 127789722 -15996733 + MLT2B1 LTR ERVL 102 177 -343 195 42 0 0 chr12 127789722 127789746 -15996709 + (CAATC)n Simple_repeat Simple_repeat 5 28 0 1420 220 47 66 chr12 127789746 127790097 -15996358 + MLT2B1 LTR ERVL 177 520 0 222 183 67 0 chr12 127790112 127790172 -15996283 + MIR SINE MIR 120 183 -79 249 254 173 46 chr12 127790222 127790395 -15996060 - L2 LINE L2 -169 3103 2909 276 257 0 29 chr12 127790468 127790538 -15995917 - L2 LINE L2 -534 2780 2713 250 290 13 65 chr12 127790540 127790695 -15995760 + MIR SINE MIR 87 233 -29 1435 244 50 41 chr12 127790871 127791331 -15995124 - LTR16B LTR ERVL 0 464 1 461 291 34 34 chr12 127791394 127791573 -15994882 + MLT1K LTR MaLR 157 335 -253 2070 91 61 3 chr12 127791575 127791901 -15994554 + AluSq SINE Alu 1 343 0 2288 217 62 6 chr12 127792091 127792626 -15993829 - L1ME1 LINE L1 -5 6161 5597 2380 98 0 0 chr12 127792628 127792925 -15993530 - AluSx SINE Alu -15 297 1 869 219 18 67 chr12 127793041 127793265 -15993190 - MER20 DNA MER1_type -5 214 2 3531 195 67 52 chr12 127793266 127794276 -15992179 - L1ME1 LINE L1 -1103 5043 4018 1722 281 78 10 chr12 127794281 127794883 -15991572 - L1MEc LINE L1 -5719 677 35 578 256 35 53 chr12 127795114 127795341 -15991114 + MIR SINE MIR 14 236 -26 2463 139 51 10 chr12 127796064 127796475 -15989980 + MSTA LTR MaLR 1 428 0 1081 250 83 48 chr12 127796619 127796845 -15989610 - L1ME4a LINE L1 0 6121 5904 1919 131 0 4 chr12 127796845 127797113 -15989342 + AluSx SINE Alu 29 295 -17 1081 250 83 48 chr12 127797113 127797463 -15988992 - L1ME4a LINE L1 -217 5904 5525 197 231 0 0 chr12 127797536 127797575 -15988880 + L2 LINE L2 3265 3303 -10 2428 103 0 0 chr12 127797726 127798038 -15988417 - AluSx SINE Alu 0 312 1 485 307 53 11 chr12 127798811 127799000 -15987455 - MIR SINE MIR -41 221 25 329 230 0 111 chr12 127799008 127799065 -15987390 + MIR SINE MIR 34 69 -193 1658 164 13 27 chr12 127799065 127799364 -15987091 + AluJo SINE Alu 1 295 -17 329 230 0 111 chr12 127799364 127799441 -15987014 + MIR SINE MIR 69 153 -109 190 349 35 0 chr12 127799497 127799583 -15986872 + MIR SINE MIR 172 260 -2 226 200 0 0 chr12 127800538 127800583 -15985872 + L2 LINE L2 3266 3310 -3 231 319 0 0 chr12 127800763 127800832 -15985623 + MIR SINE MIR 86 154 -108 249 197 0 0 chr12 127800882 127800943 -15985512 + (CA)n Simple_repeat Simple_repeat 1 61 0 1156 215 66 65 chr12 127801516 127802024 -15984431 + L2 LINE L2 2537 3043 -270 816 162 14 27 chr12 127802025 127802173 -15984282 - BC200 scRNA scRNA -54 146 1 560 239 38 92 chr12 127802173 127802466 -15983989 + L2 LINE L2 3037 3313 0 429 36 0 0 chr12 127802494 127802549 -15983906 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 1886 100 0 80 chr12 127802549 127802850 -15983605 - AluSc SINE Alu -32 277 1 1602 176 33 23 chr12 127802856 127803158 -15983297 - AluJb SINE Alu -4 308 4 1461 163 4 28 chr12 127803276 127803527 -15982928 - MLT1A1 LTR MaLR -106 259 15 2189 135 0 0 chr12 127803627 127803938 -15982517 + AluSx SINE Alu 1 311 -1 765 250 85 5 chr12 127804530 127804742 -15981713 - MIR SINE MIR 0 262 34 423 213 35 71 chr12 127804757 127804926 -15981529 - L2 LINE L2 -33 3280 3118 253 326 41 0 chr12 127805137 127805235 -15981220 - MIR SINE MIR -113 149 48 981 183 18 74 chr12 127805269 127805374 -15981081 - MER20 DNA MER1_type -3 216 129 2671 87 25 8 chr12 127805374 127805732 -15980723 + THE1B LTR MaLR 1 364 0 981 183 18 74 chr12 127805732 127805855 -15980600 - MER20 DNA MER1_type -90 129 1 188 224 0 17 chr12 127805963 127806021 -15980434 + GA-rich Low_complexity Low_complexity 5 61 0 2113 127 16 3 chr12 127806239 127806547 -15979908 + AluSx SINE Alu 1 312 0 478 331 10 31 chr12 127807165 127807399 -15979056 + MIR SINE MIR 34 262 0 1772 176 33 3 chr12 127807939 127808241 -15978214 - AluSq SINE Alu -2 311 1 524 264 51 122 chr12 127808702 127809209 -15977246 + MLT1K LTR MaLR 118 588 0 1602 161 12 15 chr12 127809278 127809682 -15976773 - LTR47A LTR ERVL 0 452 1 525 184 0 0 chr12 127810106 127810204 -15976251 + MIR3 SINE MIR 59 156 -52 1997 143 0 0 chr12 127810317 127810604 -15975851 - AluSx SINE Alu -25 287 1 219 316 38 38 chr12 127810840 127810973 -15975482 - L2 LINE L2 -637 2677 2545 799 241 183 49 chr12 127811022 127811471 -15974984 - MLT1J LTR MaLR -2 509 1 532 305 19 19 chr12 127811496 127811706 -15974749 - L2 LINE L2 -911 2403 2194 210 353 42 42 chr12 127811716 127811906 -15974549 + L2 LINE L2 2688 2877 -437 284 324 22 29 chr12 127812025 127812161 -15974294 - MIR3 SINE MIR -62 146 12 24 32 0 0 chr12 127812853 127812884 -15973571 + AT_rich Low_complexity Low_complexity 1 31 0 2379 89 0 0 chr12 127813145 127813436 -15973019 + AluSc SINE Alu 3 293 -16 822 226 44 102 chr12 127813496 127813877 -15972578 - HAL1 LINE L1 -109 2398 2053 4596 148 3 3 chr12 127813877 127814600 -15971855 + L1PA16 LINE L1 5426 6148 -18 822 226 44 102 chr12 127814600 127814736 -15971719 - HAL1 LINE L1 -454 2053 1911 473 325 12 6 chr12 127814737 127814897 -15971558 + CT-rich Low_complexity Low_complexity 2 162 0 880 314 68 5 chr12 127814929 127815299 -15971156 - HAL1 LINE L1 -606 1901 1509 1073 138 171 9 chr12 127815330 127815547 -15970908 + MSTA LTR MaLR 1 252 -176 7297 145 9 15 chr12 127815603 127816763 -15969692 + MSTA-int LTR MaLR 427 1580 0 2222 129 121 16 chr12 127816763 127817150 -15969305 + MSTA LTR MaLR 1 428 0 1967 153 7 3 chr12 127817196 127817496 -15968959 - AluJo SINE Alu -11 301 1 899 248 50 15 chr12 127817504 127817843 -15968612 - HAL1 LINE L1 -1062 1445 1095 527 238 26 68 chr12 127817995 127818260 -15968195 - HAL1 LINE L1 -1458 1049 796 1023 182 6 0 chr12 127818627 127818803 -15967652 + AluJb SINE Alu 134 310 -2 2427 87 51 25 chr12 127818897 127819252 -15967203 - THE1B LTR MaLR 0 364 1 1895 145 0 3 chr12 127819928 127820225 -15966230 + AluJb SINE Alu 1 296 -16 362 333 82 41 chr12 127820368 127820539 -15965916 - MIR SINE MIR -76 186 9 351 256 12 12 chr12 127820865 127820951 -15965504 - MER5C DNA MER1_type -215 109 24 759 314 104 36 chr12 127820994 127821523 -15964932 + MLT1K LTR MaLR 14 578 -10 289 326 33 0 chr12 127821541 127821633 -15964822 - L2 LINE L2 0 3272 3178 1513 231 36 21 chr12 127821866 127822342 -15964113 + MER113 DNA MER1_type? 38 520 -1 486 158 8 31 chr12 127822444 127822571 -15963884 - MER113 DNA MER1_type? -278 243 120 4307 160 20 29 chr12 127822663 127823444 -15963011 + LTR1 LTR ERV1 12 785 0 920 187 106 15 chr12 127823602 127823800 -15962655 - MER20 DNA MER1_type 0 219 4 2055 55 91 4 chr12 127824365 127824639 -15961816 - AluY SINE Alu -11 300 3 1235 292 68 8 chr12 127824698 127825078 -15961377 - LTR16C LTR ERVL 0 491 89 403 289 268 4 chr12 127825237 127825465 -15960990 + L2 LINE L2 2569 2856 -458 395 264 127 85 chr12 127826446 127826658 -15959797 - MIR SINE MIR -13 249 29 349 256 197 17 chr12 127826863 127826980 -15959475 + MIR SINE MIR 2 139 -123 2054 113 0 26 chr12 127827462 127827771 -15958684 + AluSq SINE Alu 1 301 -12 241 238 168 10 chr12 127827775 127827876 -15958579 - L1P1 LINE L1 -350 5805 5689 219 69 0 0 chr12 127827945 127827974 -15958481 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 504 276 35 30 chr12 127827974 127828206 -15958249 - L1ME LINE L1 -353 5768 5536 258 244 22 56 chr12 127828302 127828392 -15958063 + MIR SINE MIR 32 118 -90 265 291 51 13 chr12 127829125 127829204 -15957251 - L2 LINE L2 -6 3307 3226 * 274 242 2 51 chr12 127829172 127829251 -15957204 + MIR SINE MIR 72 146 -72 712 200 78 33 chr12 127829953 127830133 -15956322 + MIR SINE MIR 75 262 0 217 174 233 58 chr12 127830131 127830217 -15956238 - MIR SINE MIR -15 247 147 * 399 290 48 0 chr12 127830549 127830673 -15955782 - MIR SINE MIR 0 262 133 271 284 173 16 chr12 127830714 127830841 -15955614 + MIR SINE MIR 32 178 -84 303 331 31 63 chr12 127830843 127830934 -15955521 - L2 LINE L2 0 3272 3185 1794 152 0 61 chr12 127830934 127831076 -15955379 + AluJb SINE Alu 1 150 -162 1985 109 3 0 chr12 127831076 127831383 -15955072 + AluSp SINE Alu 1 308 0 1794 152 0 61 chr12 127831383 127831569 -15954886 + AluJb SINE Alu 150 310 -2 303 331 31 63 chr12 127831569 127831604 -15954851 - L2 LINE L2 -87 3185 3150 248 250 0 57 chr12 127831602 127831690 -15954765 + MIR SINE MIR 180 262 0 * 1166 233 89 49 chr12 127832399 127832865 -15953590 - MLT1H LTR MaLR 0 593 48 362 203 25 93 chr12 127833901 127834012 -15952443 - MER91B DNA MER1_type 0 190 86 1647 240 115 37 chr12 127834012 127834558 -15951897 - MLT1E LTR MaLR -2 591 3 388 327 9 0 chr12 127834596 127834706 -15951749 - MER91B DNA MER1_type -71 119 9 463 242 159 21 chr12 127834811 127835038 -15951417 - L1MC5 LINE L1 -132 7829 7587 483 252 61 14 chr12 127835336 127835483 -15950972 - MIR SINE MIR -74 188 35 189 418 15 0 chr12 127835600 127835667 -15950788 + L2 LINE L2 3188 3255 -17 303 350 27 49 chr12 127835977 127836160 -15950295 + L2 LINE L2 2904 3082 -190 284 136 0 0 chr12 127836238 127836282 -15950173 + L2 LINE L2 3264 3307 -6 2254 103 0 0 chr12 127836317 127836627 -15949828 + AluSg SINE Alu 1 310 0 1357 255 53 36 chr12 127838267 127838298 -15948157 - LTR16C LTR ERVL 0 491 462 2531 105 22 11 chr12 127838298 127838669 -15947786 - THE1C LTR MaLR 0 375 1 1357 255 53 36 chr12 127838669 127838724 -15947731 - LTR16C LTR ERVL -29 462 409 2184 134 20 6 chr12 127838724 127839074 -15947381 - THE1A LTR MaLR 0 355 1 1357 255 53 36 chr12 127839074 127839402 -15947053 - LTR16C LTR ERVL -82 409 69 3644 129 11 0 chr12 127839700 127840221 -15946234 + MER1A DNA MER1_type 3 529 0 212 395 76 8 chr12 127840800 127840919 -15945536 + MER91A DNA MER1_type 30 156 -40 2558 48 0 0 chr12 127840919 127841230 -15945225 - AluY SINE Alu 0 311 1 189 274 48 16 chr12 127842596 127842658 -15943797 + L2 LINE L2 3159 3222 -50 602 229 90 0 chr12 127842711 127842855 -15943600 + MIR SINE MIR 50 206 -56 198 103 0 0 chr12 127842898 127842927 -15943528 + (CAT)n Simple_repeat Simple_repeat 2 30 0 507 273 49 0 chr12 127844020 127844163 -15942292 - MIR SINE MIR -34 228 79 194 216 20 20 chr12 127844200 127844251 -15942204 - L2 LINE L2 0 3272 3222 528 282 181 14 chr12 127844681 127844897 -15941558 - MIR SINE MIR -10 252 1 509 189 113 0 chr12 127844995 127845101 -15941354 + MIR SINE MIR 64 181 -81 348 273 127 7 chr12 127845365 127845515 -15940940 + L1ME4a LINE L1 5936 6103 -18 236 333 13 0 chr12 127846056 127846131 -15940324 + MER117 DNA MER1_type 16 91 -106 2215 83 17 0 chr12 127846182 127846482 -15939973 + AluSx SINE Alu 2 306 -6 279 0 0 0 chr12 127847113 127847144 -15939311 + (GA)n Simple_repeat Simple_repeat 1 31 0 32 0 0 0 chr12 127847240 127847272 -15939183 + AT_rich Low_complexity Low_complexity 1 32 0 812 281 56 18 chr12 127847522 127847807 -15938648 - MER102b DNA MER1_type -3 338 43 1037 266 120 11 chr12 127847884 127848252 -15938203 + LTR16C LTR ERVL 37 444 -47 334 352 0 49 chr12 127849165 127849327 -15937128 + MER91A DNA MER1_type 6 159 -37 1746 154 3 50 chr12 127849400 127849602 -15936853 - L1MA3 LINE L1 -2 6303 6124 2164 96 0 13 chr12 127849602 127849904 -15936551 + AluSx SINE Alu 2 299 -13 1746 154 3 50 chr12 127849904 127850058 -15936397 - L1MA3 LINE L1 -181 6124 5964 1193 110 0 110 chr12 127850407 127850491 -15935964 + L1MA4 LINE L1 6072 6164 -136 1733 145 0 4 chr12 127850491 127850753 -15935702 - AluSx SINE Alu -51 261 1 1193 110 0 110 chr12 127850753 127850923 -15935532 + L1MA4 LINE L1 6164 6298 -2 555 293 84 77 chr12 127851169 127851561 -15934894 - L2 LINE L2 0 3313 2919 955 322 66 6 chr12 127852870 127853450 -15933005 - MER115 DNA AcHobo -9 684 47 839 255 158 45 chr12 127855287 127855687 -15930768 - MLT1K LTR MaLR -9 579 135 2266 98 3 0 chr12 127855815 127856121 -15930334 + AluSp SINE Alu 1 307 -6 2383 68 0 0 chr12 127856165 127856461 -15929994 + AluY SINE Alu 1 296 -15 4418 143 3 4 chr12 127856470 127857157 -15929298 + L1MC1 LINE L1 5642 6327 -6 260 302 129 0 chr12 127857437 127857553 -15928902 - L2 LINE L2 -1 3312 3182 512 287 81 38 chr12 127857997 127858206 -15928249 - MIR SINE MIR 0 262 45 228 223 122 108 chr12 127858505 127858578 -15927877 + MIR SINE MIR 81 158 -104 2173 93 7 0 chr12 127858578 127858869 -15927586 + AluSc SINE Alu 1 293 -16 228 223 122 108 chr12 127858869 127858934 -15927521 + MIR SINE MIR 158 221 -41 407 331 39 73 chr12 127858951 127859332 -15927123 - L2 LINE L2 -97 3175 2808 1296 238 93 47 chr12 127859544 127859700 -15926755 + MER113 DNA MER1_type? 6 153 -368 1974 114 39 0 chr12 127859700 127859981 -15926474 + AluSx SINE Alu 1 292 -20 1296 238 93 47 chr12 127859981 127860316 -15926139 + MER113 DNA MER1_type? 153 520 -1 655 270 145 5 chr12 127860818 127861018 -15925437 + MIR SINE MIR 35 262 0 1960 212 139 8 chr12 127861047 127861523 -15924932 - MLT1H LTR MaLR 0 549 12 674 206 139 11 chr12 127862448 127862628 -15923827 + MIR SINE MIR 34 236 -26 595 254 85 12 chr12 127862670 127862835 -15923620 - MIR SINE MIR -17 245 69 217 172 0 69 chr12 127864162 127864220 -15922235 + (CTGGGG)n Simple_repeat Simple_repeat 1 54 0 301 259 110 67 chr12 127864437 127864645 -15921810 + MIR SINE MIR 9 234 -28 1563 176 3 31 chr12 127864962 127865252 -15921203 + AluJb SINE Alu 5 286 -16 206 62 31 0 chr12 127865252 127865284 -15921171 + (TATAA)n Simple_repeat Simple_repeat 4 36 0 181 125 0 31 chr12 127865311 127865343 -15921112 - MIR SINE MIR -163 99 69 1086 231 72 22 chr12 127865491 127865893 -15920562 + MER113 DNA MER1_type? 1 422 -99 254 28 0 28 chr12 127868383 127868419 -15918036 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 459 0 0 0 chr12 127868479 127868530 -15917925 + (TG)n Simple_repeat Simple_repeat 2 52 0 459 73 0 0 chr12 127869755 127869823 -15916632 + (TC)n Simple_repeat Simple_repeat 1 68 0 224 144 38 14 chr12 127871537 127871596 -15914859 + MIR SINE MIR 110 170 -38 291 258 75 11 chr12 127871959 127872052 -15914403 - MIR SINE MIR -77 185 87 183 118 20 39 chr12 127872725 127872776 -15913679 + (TA)n Simple_repeat Simple_repeat 1 50 0 387 0 0 0 chr12 127872776 127872819 -15913636 + (TG)n Simple_repeat Simple_repeat 2 44 0 402 224 30 52 chr12 127872835 127872969 -15913486 - MIR SINE MIR -33 229 99 2053 144 3 19 chr12 127872969 127873281 -15913174 + AluSq SINE Alu 3 309 -4 593 289 76 27 chr12 127873475 127873700 -15912755 + MIR SINE MIR 20 255 -7 350 244 118 0 chr12 127873941 127874076 -15912379 - Charlie8 DNA MER1_type -2228 189 39 372 22 0 0 chr12 127874079 127874124 -15912331 + (CA)n Simple_repeat Simple_repeat 2 46 0 195 242 194 0 chr12 127874384 127874446 -15912009 - MIR SINE MIR 0 262 189 266 234 363 21 chr12 127874503 127874648 -15911807 - MIR SINE MIR -45 163 3 239 366 8 49 chr12 127875064 127875144 -15911311 + MIR3 SINE MIR 77 152 -56 533 276 59 12 chr12 127875144 127875314 -15911141 + MER5B DNA MER1_type 1 178 0 239 366 8 49 chr12 127875314 127875356 -15911099 + MIR3 SINE MIR 152 194 -14 656 194 56 71 chr12 127875408 127875604 -15910851 - MIR SINE MIR -8 254 62 280 317 50 56 chr12 127875577 127875738 -15910717 - L2 LINE L2 -140 3132 2973 * 2047 151 7 0 chr12 127875758 127876169 -15910286 + AluSx SINE Alu 1 413 0 229 279 127 76 chr12 127876226 127876384 -15910071 + L2 LINE L2 3088 3253 -60 788 294 9 5 chr12 127876705 127876919 -15909536 + MIR SINE MIR 13 227 -35 2354 66 31 0 chr12 127876967 127877253 -15909202 + AluSp SINE Alu 5 299 -14 429 20 0 0 chr12 127877848 127877898 -15908557 + (CA)n Simple_repeat Simple_repeat 2 51 0 1297 268 29 43 chr12 127878179 127878691 -15907764 + MLT1J LTR MaLR 1 505 -6 623 274 68 88 chr12 127879200 127879609 -15906846 - MLT1I LTR MaLR -8 401 1 1225 279 78 41 chr12 127879619 127880081 -15906374 - L2 LINE L2 -20 3293 2815 3221 116 29 30 chr12 127880112 127880232 -15906223 - MER41B LTR ERV1 0 635 516 2635 55 0 0 chr12 127880232 127880541 -15905914 + AluY SINE Alu 1 309 -2 3221 116 29 30 chr12 127880541 127880945 -15905510 - MER41B LTR ERV1 -119 516 112 945 118 20 0 chr12 127880962 127881114 -15905341 - MER41A LTR ERV1 -398 156 2 1756 101 180 79 chr12 127881148 127881514 -15904941 - MER4A LTR ERV1 0 664 262 599 121 0 10 chr12 127881515 127881614 -15904841 - MER4A LTR ERV1 -566 98 1 329 286 102 0 chr12 127881631 127881729 -15904726 + L2 LINE L2 3206 3313 0 551 322 104 19 chr12 127881760 127882192 -15904263 + L2 LINE L2 2370 2838 -476 465 261 159 0 chr12 127882209 127882366 -15904089 - MIR SINE MIR -78 184 3 511 271 20 13 chr12 127883013 127883164 -15903291 + MIR SINE MIR 111 262 0 946 198 103 21 chr12 127883194 127883436 -15903019 + MIR SINE MIR 1 262 0 547 248 117 27 chr12 127883655 127883877 -15902578 + MIR SINE MIR 20 261 -1 350 312 9 0 chr12 127883951 127884060 -15902395 - L2 LINE L2 -2 3311 3202 249 324 60 9 chr12 127884842 127885024 -15901431 + MIR SINE MIR 10 258 -4 817 192 60 90 chr12 127885061 127885180 -15901275 + MIR SINE MIR 36 146 -116 2272 116 0 0 chr12 127885180 127885483 -15900972 + AluSq SINE Alu 4 306 -7 817 192 60 90 chr12 127885483 127885597 -15900858 + MIR SINE MIR 146 262 0 461 239 100 8 chr12 127886229 127886359 -15900096 + MIR SINE MIR 16 157 -105 192 315 46 77 chr12 127886547 127886677 -15899778 - MIR3 SINE MIR -37 171 46 635 206 22 22 chr12 127886855 127886991 -15899464 + MIR SINE MIR 106 241 -21 2278 181 4 43 chr12 127887143 127887234 -15899221 + MER31A LTR ERV1 3 96 -389 2218 113 3 3 chr12 127887234 127887544 -15898911 + AluSg SINE Alu 1 310 0 2278 181 4 43 chr12 127887544 127887939 -15898516 + MER31A LTR ERV1 96 470 -15 187 254 56 28 chr12 127888438 127888509 -15897946 + L3 LINE CR1 272 344 -1233 276 244 98 0 chr12 127888761 127888843 -15897612 + MIR SINE MIR 56 145 -63 314 263 26 0 chr12 127889447 127889561 -15896894 - LTR33A LTR ERVL -3 520 404 678 210 28 13 chr12 127889728 127889894 -15896561 - MIR SINE MIR -19 243 74 206 346 81 41 chr12 127889939 127890171 -15896284 - MIR SINE MIR -13 249 5 319 229 127 51 chr12 127890501 127890671 -15895784 + MIR SINE MIR 31 213 -49 1833 151 3 19 chr12 127890677 127891028 -15895427 - MER4A LTR ERV1 0 664 261 633 121 0 10 chr12 127891028 127891127 -15895328 - MER4A LTR ERV1 -566 98 1 498 278 28 42 chr12 127891239 127891383 -15895072 + MIR SINE MIR 47 188 -74 203 182 0 0 chr12 127891419 127891452 -15895003 + MIR SINE MIR 132 164 -98 228 333 119 0 chr12 127891647 127891731 -15894724 + MIR SINE MIR 52 145 -117 2420 103 3 0 chr12 127891895 127892207 -15894248 + AluSq SINE Alu 1 313 0 507 266 37 32 chr12 127892283 127892471 -15893984 - MIR SINE MIR -37 225 37 233 271 53 28 chr12 127892475 127892613 -15893842 + MIR3 SINE MIR 48 188 -20 420 179 0 24 chr12 127892667 127892751 -15893704 + MER103 DNA DNA 38 119 -47 320 227 102 0 chr12 127893128 127893216 -15893239 - L1ME4a LINE L1 -2 6119 6023 333 351 128 7 chr12 127893513 127893661 -15892794 - MIR SINE MIR -71 191 26 * 783 253 4 97 chr12 127893647 127893904 -15892551 + MIR SINE MIR 30 262 0 547 273 62 54 chr12 127894344 127894679 -15891776 + L1ME4a LINE L1 5730 6061 -60 1656 194 13 19 chr12 127894679 127894875 -15891580 - AluJo SINE Alu 0 312 116 2276 108 0 0 chr12 127894875 127895170 -15891285 - AluSc SINE Alu -14 295 1 201 39 0 0 chr12 127895170 127895196 -15891259 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1656 194 13 19 chr12 127895196 127895312 -15891143 - AluJo SINE Alu -194 118 1 547 273 62 54 chr12 127895312 127895364 -15891091 + L1ME4a LINE L1 6061 6120 -1 181 311 96 15 chr12 127895930 127896065 -15890390 + MIR3 SINE MIR 4 149 -59 297 329 24 37 chr12 127896336 127896500 -15889955 - MIR SINE MIR -55 207 46 233 303 43 60 chr12 127896820 127896880 -15889575 - MIR SINE MIR -56 152 154 1901 144 0 11 chr12 127896880 127897194 -15889261 - AluSx SINE Alu 0 313 3 233 303 43 60 chr12 127897194 127897306 -15889149 - MIR SINE MIR -53 155 43 198 0 0 0 chr12 127897765 127897787 -15888668 + (TC)n Simple_repeat Simple_repeat 2 23 0 2363 97 0 3 chr12 127897787 127898086 -15888369 - AluSx SINE Alu -14 298 1 269 292 35 26 chr12 127898158 127898271 -15888184 - MIR SINE MIR -61 147 34 230 293 73 12 chr12 127898446 127898528 -15887927 + L3 LINE CR1 1491 1577 0 396 0 0 0 chr12 127898841 127898885 -15887570 + (TG)n Simple_repeat Simple_repeat 2 45 0 2300 119 53 0 chr12 127899004 127899324 -15887131 - MER1B DNA MER1_type 0 337 1 228 372 11 0 chr12 127899536 127899630 -15886825 + MIR SINE MIR 58 152 -56 853 197 72 22 chr12 127900258 127900481 -15885974 + MER113 DNA MER1_type? 193 426 -95 391 301 104 0 chr12 127900483 127900629 -15885826 + MIR3 SINE MIR 49 208 0 466 294 54 43 chr12 127900694 127900878 -15885577 - MIR SINE MIR -76 186 1 216 97 0 0 chr12 127901122 127901153 -15885302 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 762 284 65 9 chr12 127901343 127901572 -15884883 + MIR SINE MIR 2 243 -19 190 296 104 24 chr12 127901729 127901854 -15884601 + MIR SINE MIR 34 168 -94 2241 125 0 3 chr12 127901918 127902229 -15884226 + AluSg SINE Alu 1 310 0 2079 131 44 52 chr12 127902245 127902612 -15883843 - THE1B LTR MaLR 0 364 1 630 240 40 13 chr12 127903006 127903156 -15883299 - MIR SINE MIR -90 172 19 34 0 0 0 chr12 127904820 127904854 -15881601 + AT_rich Low_complexity Low_complexity 1 34 0 1016 286 57 22 chr12 127904870 127905389 -15881066 - MLT1L LTR MaLR -47 568 2 534 226 61 33 chr12 127905451 127905632 -15880823 - MLT1K LTR MaLR -22 566 381 2036 138 0 19 chr12 127905801 127906112 -15880343 - AluSq SINE Alu -8 305 1 384 222 60 17 chr12 127906117 127906234 -15880221 - MLT1K LTR MaLR -329 259 138 286 213 160 11 chr12 127906239 127906333 -15880122 - MIR SINE MIR -70 192 85 241 370 56 0 chr12 127906446 127906554 -15879901 - L2 LINE L2 -23 3249 3136 426 257 143 106 chr12 127906570 127906674 -15879781 - MIR SINE MIR -15 247 148 2190 125 3 3 chr12 127906674 127906985 -15879470 - AluSx SINE Alu -1 311 1 426 257 143 106 chr12 127906985 127907117 -15879338 - MIR SINE MIR -114 148 2 260 332 48 24 chr12 127907361 127907627 -15878828 + L2 LINE L2 2718 2998 -274 362 221 29 0 chr12 127907844 127907912 -15878543 - L2 LINE L2 -4 3268 3199 3236 155 42 83 chr12 127908145 127908389 -15878066 - LTR8 LTR ERV1 0 691 438 887 108 0 7 chr12 127908389 127908528 -15877927 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 1967 110 48 0 chr12 127908528 127908800 -15877655 - AluSg SINE Alu -25 285 1 3236 155 42 83 chr12 127908800 127909275 -15877180 - LTR8 LTR ERV1 -251 440 1 238 338 0 0 chr12 127909690 127909761 -15876694 + L2 LINE L2 3202 3272 0 281 273 211 19 chr12 127909775 127909997 -15876458 + L2 LINE L2 2768 3038 -275 398 298 50 33 chr12 127910196 127910317 -15876138 + L2 LINE L2 3191 3313 0 346 261 179 58 chr12 127961635 127961842 -15824613 + MIR SINE MIR 2 233 -29 412 252 26 9 chr12 127961890 127962005 -15824450 - MIR SINE MIR -99 163 47 2686 116 39 5 chr12 127962556 127962970 -15823485 - MSTA LTR MaLR 0 428 1 345 42 83 0 chr12 127963037 127963085 -15823370 + MADE1 DNA Mariner 1 52 -28 263 100 40 80 chr12 127963105 127963155 -15823300 - HSMAR1 DNA Mariner -1235 52 5 205 241 0 0 chr12 127963753 127963811 -15822644 + G-rich Low_complexity Low_complexity 1 58 0 390 214 0 0 chr12 127963850 127963990 -15822465 + G-rich Low_complexity Low_complexity 1 140 0 242 196 0 0 chr12 127964012 127964063 -15822392 + G-rich Low_complexity Low_complexity 1 51 0 405 259 0 7 chr12 127964098 127964241 -15822214 + AluSg/x SINE Alu 127 268 -41 238 235 27 155 chr12 127964465 127964539 -15821916 + L2 LINE L2 3143 3180 -133 2464 76 7 0 chr12 127964539 127964840 -15821615 - AluY SINE Alu -8 303 1 238 235 27 155 chr12 127964840 127964952 -15821503 + L2 LINE L2 3180 3305 -8 1139 124 103 22 chr12 127965725 127965910 -15820545 - MER20 DNA MER1_type 0 219 20 438 20 0 0 chr12 127965929 127965980 -15820475 + (CA)n Simple_repeat Simple_repeat 1 51 0 423 297 59 47 chr12 127966069 127966305 -15820150 - MIR SINE MIR -10 252 14 1098 122 0 0 chr12 127966483 127966663 -15819792 + (CAT)n Simple_repeat Simple_repeat 1 180 0 208 268 0 0 chr12 127967101 127967157 -15819298 - MIR SINE MIR -72 136 81 1499 103 26 4 chr12 127967176 127967410 -15819045 - L1PB1 LINE L1 0 6151 5913 1024 259 58 8 chr12 127967520 127967885 -15818570 + LTR33A LTR ERVL 104 523 0 304 223 54 65 chr12 127968029 127968213 -15818242 - L1ME4a LINE L1 -15 6106 5925 355 295 111 6 chr12 127968410 127968630 -15817825 - L1ME4a LINE L1 -313 5808 5555 21 100 0 0 chr12 127968650 127968720 -15817735 + AT_rich Low_complexity Low_complexity 1 70 0 25 65 0 0 chr12 127968776 127968822 -15817633 + AT_rich Low_complexity Low_complexity 1 46 0 455 266 92 51 chr12 127969512 127969902 -15816553 - MLT1K LTR MaLR -4 611 168 245 153 51 17 chr12 127970322 127970381 -15816074 + T-rich Low_complexity Low_complexity 2 62 0 1910 154 3 10 chr12 127970383 127970694 -15815761 - AluJb SINE Alu -3 309 1 1130 265 78 37 chr12 127971152 127971744 -15814711 - L1ME4a LINE L1 0 6121 5506 22 0 0 0 chr12 127971753 127971775 -15814680 + AT_rich Low_complexity Low_complexity 1 22 0 746 190 117 12 chr12 127971871 127972034 -15814421 + AluJo SINE Alu 122 301 -11 475 232 92 60 chr12 127972373 127972558 -15813897 - MIR SINE MIR -68 194 4 389 274 44 0 chr12 127973125 127973238 -15813217 + MIR SINE MIR 34 151 -111 996 155 29 117 chr12 127973863 127974172 -15812283 - MER33 DNA MER1_type -3 321 40 1374 190 64 64 chr12 127974174 127974200 -15812255 + MLT1B LTR MaLR 1 26 -364 426 39 0 0 chr12 127974200 127974252 -15812203 + (CA)n Simple_repeat Simple_repeat 1 52 0 1374 190 64 64 chr12 127974252 127974418 -15812037 + MLT1B LTR MaLR 26 191 -199 2325 98 0 3 chr12 127974418 127974715 -15811740 + AluY SINE Alu 1 296 -15 1374 190 64 64 chr12 127974715 127974910 -15811545 + MLT1B LTR MaLR 190 389 -1 4621 111 6 47 chr12 127975137 127975703 -15810752 - LTR8 LTR ERV1 0 691 160 2401 87 0 3 chr12 127975703 127976012 -15810443 - AluY SINE Alu -3 308 1 4621 111 6 47 chr12 127976012 127976166 -15810289 - LTR8 LTR ERV1 -531 160 1 375 189 38 66 chr12 127976718 127976824 -15809631 - MER63B DNA MER1_type -18 418 316 1676 161 23 79 chr12 127976831 127977223 -15809232 - MER63B DNA MER1_type -64 372 3 631 321 127 43 chr12 127978372 127979149 -15807306 - L2 LINE L2 0 3313 2475 294 189 0 0 chr12 127979569 127979622 -15806833 + L2 LINE L2 3204 3256 -16 181 320 0 0 chr12 127979696 127979746 -15806709 - MIR SINE MIR -127 135 86 1529 256 130 34 chr12 127979747 127980248 -15806207 - MLT1H LTR MaLR 0 549 1 2385 75 10 3 chr12 127980575 127980870 -15805585 - AluSq SINE Alu -16 297 1 685 249 43 11 chr12 127981302 127981487 -15804968 - MER117 DNA MER1_type -4 193 3 407 287 40 27 chr12 127982506 127982656 -15803799 + MIR SINE MIR 34 185 -77 321 237 139 58 chr12 127982767 127982940 -15803515 + MIR SINE MIR 20 206 -56 216 0 0 0 chr12 127983184 127983208 -15803247 + (A)n Simple_repeat Simple_repeat 1 24 0 344 345 14 0 chr12 127983722 127983864 -15802591 - MER103 DNA DNA -1 165 22 2485 67 15 0 chr12 127983945 127984274 -15802181 + L1PA8 LINE L1 5838 6171 -1 2431 83 0 10 chr12 127984282 127984595 -15801860 + AluY SINE Alu 1 310 -1 802 256 33 0 chr12 127984632 127984843 -15801612 - LTR16A LTR ERVL 0 450 233 547 273 7 7 chr12 127984869 127985012 -15801443 + MIR SINE MIR 116 258 -4 1755 233 28 17 chr12 127985416 127985888 -15800567 - L1ME3A LINE L1 0 6170 5694 551 202 39 0 chr12 127985989 127986093 -15800362 - L1ME3A LINE L1 -495 5675 5568 889 94 0 16 chr12 127986447 127986574 -15799881 + FLAM_C SINE Alu 1 125 -18 540 244 151 4 chr12 127986574 127986799 -15799656 - L1MC5 LINE L1 -77 7884 7627 238 192 0 96 chr12 127986802 127986875 -15799580 - L1ME LINE L1 -294 5827 5762 720 213 164 0 chr12 127987873 127988056 -15798399 + MIR SINE MIR 21 233 -29 192 125 0 0 chr12 127988070 127988102 -15798353 + (CA)n Simple_repeat Simple_repeat 2 33 0 2476 88 0 0 chr12 127989270 127989575 -15796880 + AluSx SINE Alu 1 305 -7 2238 113 41 12 chr12 127989856 127990201 -15796254 + L1PB1 LINE L1 5795 6149 -2 233 225 70 14 chr12 127990508 127990579 -15795876 + MER91C DNA MER1_type 36 110 -30 229 255 0 0 chr12 127990704 127990751 -15795704 + GA-rich Low_complexity Low_complexity 6 52 0 206 217 22 0 chr12 127991055 127991101 -15795354 - L2 LINE L2 -20 3252 3206 842 95 17 0 chr12 127991932 127992048 -15794407 + AluSp/q SINE Alu 191 308 -5 1590 176 8 26 chr12 127992072 127992424 -15794031 + L1MA9 LINE L1 5937 6282 -30 555 274 65 15 chr12 127992436 127992637 -15793818 + MIR SINE MIR 29 239 -23 329 250 75 17 chr12 127993718 127993838 -15792617 - L2 LINE L2 -2 3311 3185 3213 129 50 11 chr12 127993998 127994533 -15791922 + L1PB4 LINE L1 5594 6149 -7 23 0 0 0 chr12 127994533 127994556 -15791899 + AT_rich Low_complexity Low_complexity 1 23 0 2356 82 0 3 chr12 127994695 127994988 -15791467 + AluSc SINE Alu 1 292 -17 330 248 154 0 chr12 127995542 127995659 -15790796 + MIR3 SINE MIR 59 193 -15 308 293 19 84 chr12 127996546 127996761 -15789694 + MIR SINE MIR 36 236 -26 210 171 0 0 chr12 127996779 127996820 -15789635 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 2063 116 0 14 chr12 127996930 127997245 -15789210 - AluSx SINE Alu 0 311 1 404 200 11 0 chr12 127997901 127997996 -15788459 + GA-rich Low_complexity Low_complexity 2 97 0 270 56 0 0 chr12 127998008 127998044 -15788411 + (ATG)n Simple_repeat Simple_repeat 3 38 0 198 320 109 23 chr12 127998060 127998188 -15788267 - MIR SINE MIR 0 262 124 787 227 60 5 chr12 127998299 127998484 -15787971 + MIR SINE MIR 30 224 -38 679 259 105 97 chr12 127998838 127999239 -15787216 - MLT1J LTR MaLR -19 492 89 191 314 11 121 chr12 127999435 127999699 -15786756 - L2 LINE L2 -101 3171 2937 895 202 0 12 chr12 127999710 128000001 -15786454 + FRAM SINE Alu 11 299 0 326 256 8 8 chr12 127999880 128000175 -15786280 + GA-rich Low_complexity Low_complexity 2 296 0 * 203 328 43 38 chr12 128000175 128000410 -15786045 - L2 LINE L2 -411 2903 2668 4050 83 39 0 chr12 128000623 128001156 -15785299 - MER41A LTR ERV1 0 554 1 192 40 0 0 chr12 128002540 128002565 -15783890 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 2118 129 0 22 chr12 128002854 128003172 -15783283 - AluSx SINE Alu -1 311 1 398 213 213 0 chr12 128003333 128003441 -15783014 - MER5A DNA MER1_type -1 188 58 2201 208 119 64 chr12 128003490 128004131 -15782324 + LTR8 LTR ERV1 16 691 0 266 68 159 0 chr12 128004132 128004176 -15782279 - MER5A DNA MER1_type -129 60 10 663 160 39 45 chr12 128004447 128004603 -15781852 + MER104 DNA Tc2 1 155 -25 225 197 82 0 chr12 128004630 128004691 -15781764 - MLT1I LTR MaLR -25 384 319 221 284 88 10 chr12 128005152 128005254 -15781201 + MIR SINE MIR 30 139 -123 466 280 14 0 chr12 128005318 128005461 -15780994 - MIR SINE MIR -29 233 89 900 195 19 0 chr12 128006752 128006906 -15779549 - FRAM SINE Alu -22 154 1 438 20 0 0 chr12 128006907 128006958 -15779497 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2108 120 0 0 chr12 128006958 128007242 -15779213 - AluSx SINE Alu -28 284 1 464 243 108 20 chr12 128007536 128007684 -15778771 + MIR SINE MIR 43 203 -59 628 182 35 0 chr12 128008076 128008246 -15778209 + CT-rich Low_complexity Low_complexity 3 178 0 1719 218 52 59 chr12 128008293 128008833 -15777622 + MER49 LTR ERV1 1 543 -360 2533 55 0 10 chr12 128008833 128009142 -15777313 + AluY SINE Alu 1 306 -5 1719 218 52 59 chr12 128009142 128009279 -15777176 + MER49 LTR ERV1 543 679 -224 2128 132 0 0 chr12 128009279 128009574 -15776881 + AluSx SINE Alu 1 295 -17 1719 218 52 59 chr12 128009574 128009720 -15776735 + MER49 LTR ERV1 679 903 0 983 265 54 32 chr12 128009838 128010208 -15776247 + L2 LINE L2 2927 3304 -9 1734 170 54 64 chr12 128010281 128010627 -15775828 + LTR52 LTR ERVL 1 349 -72 2680 146 49 6 chr12 128010627 128011093 -15775362 + MER66B LTR ERV1 1 486 0 1734 170 54 64 chr12 128011093 128011134 -15775321 + LTR52 LTR ERVL 349 386 -35 1664 152 53 42 chr12 128011134 128011495 -15774960 + MLT1A1 LTR MaLR 1 365 0 1734 170 54 64 chr12 128011495 128011529 -15774926 + LTR52 LTR ERVL 386 419 -2 2195 114 0 20 chr12 128011796 128011927 -15774528 + AluSg SINE Alu 1 133 -177 180 0 0 0 chr12 128011927 128011947 -15774508 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2195 114 0 20 chr12 128011947 128012121 -15774334 + AluSg SINE Alu 133 300 -10 21 0 0 0 chr12 128012491 128012512 -15773943 + AT_rich Low_complexity Low_complexity 1 21 0 246 171 43 14 chr12 128012514 128012584 -15773871 - HsTC2a DNA Tc2 -60 682 611 863 144 0 8 chr12 128012595 128012720 -15773735 + FLAM_C SINE Alu 1 124 -19 34 0 0 0 chr12 128012720 128012754 -15773701 + AT_rich Low_complexity Low_complexity 1 34 0 1350 245 123 56 chr12 128012754 128013062 -15773393 - HsTC2a DNA Tc2 -1280 620 334 2018 100 13 57 chr12 128013062 128013363 -15773092 - AluSx SINE Alu -24 288 1 1350 245 123 56 chr12 128013363 128013629 -15772826 - HsTC2a DNA Tc2 -1566 334 7 476 333 137 15 chr12 128013898 128014234 -15772221 + L2 LINE L2 2896 3272 0 392 314 51 71 chr12 128014514 128014769 -15771686 + L2 LINE L2 3022 3271 -1 277 197 92 26 chr12 128015295 128015371 -15771084 + L2 LINE L2 3227 3307 -6 320 240 115 0 chr12 128015377 128015473 -15770982 - MIR SINE MIR -129 133 27 639 192 18 0 chr12 128015579 128015746 -15770709 + CT-rich Low_complexity Low_complexity 1 170 0 2376 89 0 7 chr12 128016380 128016682 -15769773 - AluSg SINE Alu -10 300 1 407 259 102 7 chr12 128016838 128016985 -15769470 - MIR SINE MIR -76 186 26 307 233 0 0 chr12 128017153 128017213 -15769242 + MER5B DNA MER1_type 11 70 -108 4714 64 2 24 chr12 128017260 128017883 -15768572 - L1PB1 LINE L1 0 6151 5543 784 83 58 8 chr12 128017886 128018006 -15768449 + L1PB1 LINE L1 5386 5511 -640 242 200 0 18 chr12 128018010 128018065 -15768390 + MER5B DNA MER1_type 121 174 -4 406 132 43 15 chr12 128018227 128018306 -15768149 - L1MB7 LINE L1 -263 5921 5849 1079 160 39 10 chr12 128018307 128018513 -15767942 + L1MB5 LINE L1 5955 6166 -8 908 117 0 29 chr12 128018526 128018663 -15767792 + FLAM_C SINE Alu 1 133 0 351 299 181 0 chr12 128019424 128019645 -15766810 + MIR SINE MIR 1 261 -1 584 263 86 27 chr12 128020339 128020724 -15765731 + L2 LINE L2 2621 3023 -249 659 227 155 16 chr12 128020734 128021158 -15765297 - MLT1G1 LTR MaLR 0 595 1 344 338 80 51 chr12 128021158 128021395 -15765060 + L2 LINE L2 3029 3272 0 391 296 88 29 chr12 128021447 128021695 -15764760 - Charlie8 DNA MER1_type -1010 1407 74 198 71 0 0 chr12 128021698 128021726 -15764729 + (CA)n Simple_repeat Simple_repeat 1 28 0 293 68 23 0 chr12 128021726 128021770 -15764685 + (GA)n Simple_repeat Simple_repeat 1 45 0 1559 133 0 4 chr12 128021833 128022059 -15764396 + AluJo SINE Alu 1 225 -87 21 0 0 0 chr12 128022097 128022118 -15764337 + AT_rich Low_complexity Low_complexity 1 21 0 332 244 96 51 chr12 128022719 128022875 -15763580 + MIR SINE MIR 19 181 -81 2258 110 0 3 chr12 128022876 128023175 -15763280 - AluSg SINE Alu -12 298 1 474 291 45 6 chr12 128023206 128023385 -15763070 + MIR SINE MIR 61 246 -16 1408 185 106 0 chr12 128023429 128023694 -15762761 - AluJb SINE Alu -19 293 1 462 296 62 0 chr12 128024058 128024237 -15762218 + MIR SINE MIR 53 242 -20 726 150 19 106 chr12 128024590 128024750 -15761705 - MER63A DNA MER1_type 0 210 65 284 286 0 18 chr12 128024819 128024935 -15761520 + T-rich Low_complexity Low_complexity 1 113 0 2418 83 0 0 chr12 128025384 128025674 -15760781 - AluSc SINE Alu -19 290 1 1568 153 0 60 chr12 128026137 128026437 -15760018 - AluJo SINE Alu -10 302 21 472 282 60 74 chr12 128026557 128026896 -15759559 - L1ME4a LINE L1 -94 6027 5694 2543 74 0 0 chr12 128026896 128027206 -15759249 - AluY SINE Alu -1 310 1 472 282 60 74 chr12 128027206 128027284 -15759171 - L1ME4a LINE L1 -427 5694 5616 1086 175 25 15 chr12 128027795 128027995 -15758460 + MER63A DNA MER1_type 9 210 0 627 278 73 21 chr12 128028200 128028434 -15758021 + MIR SINE MIR 13 258 -4 813 215 131 58 chr12 128029353 128029408 -15757047 - MER46C DNA MER2_type -3 335 285 221 0 35 0 chr12 128029408 128029437 -15757018 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 813 215 131 58 chr12 128029437 128029693 -15756762 - MER46C DNA MER2_type -53 285 1 2188 95 7 3 chr12 128030275 128030560 -15755895 + AluSp SINE Alu 1 286 -27 552 222 272 0 chr12 128030614 128030794 -15755661 - MIR SINE MIR -18 244 16 27 29 0 0 chr12 128031209 128031243 -15755212 + AT_rich Low_complexity Low_complexity 1 34 0 486 238 107 66 chr12 128031309 128031553 -15754902 - L2 LINE L2 -49 3264 3011 506 245 33 54 chr12 128032218 128032402 -15754053 - MIR SINE MIR -71 191 12 479 284 62 8 chr12 128032491 128032778 -15753677 - MLT1I LTR MaLR -19 390 72 2267 86 0 14 chr12 128033907 128034199 -15752256 - AluSq SINE Alu -12 301 14 233 269 30 0 chr12 128034305 128034372 -15752083 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 811 182 65 105 chr12 128034448 128034695 -15751760 + MER46C DNA MER2_type 2 238 -100 375 189 38 66 chr12 128034838 128034944 -15751511 + MER63 DNA MER1_type 940 1042 -18 977 129 16 54 chr12 128035496 128035650 -15750805 + LTR8 LTR ERV1 1 148 -543 2247 93 0 13 chr12 128035650 128035952 -15750503 + AluY SINE Alu 1 298 -13 977 129 16 54 chr12 128035952 128035983 -15750472 + LTR8 LTR ERV1 148 179 -512 255 326 89 22 chr12 128036838 128036973 -15749482 + MIR SINE MIR 5 148 -114 2090 97 14 10 chr12 128037000 128037289 -15749166 + AluSx SINE Alu 1 290 -22 2250 85 0 49 chr12 128038520 128038826 -15747629 - AluSx SINE Alu -16 296 6 1078 185 0 0 chr12 128038826 128038999 -15747456 - AluSc SINE Alu -9 300 128 985 163 12 12 chr12 128041223 128041383 -15745072 - FRAM SINE Alu -4 162 3 2324 115 0 3 chr12 128041520 128041832 -15744623 + AluSq SINE Alu 1 311 -2 181 314 137 16 chr12 128042323 128042447 -15744008 + MIR SINE MIR 110 248 -14 2267 118 0 0 chr12 128042538 128042842 -15743613 - AluSx SINE Alu -8 304 1 1007 184 44 29 chr12 128043645 128043851 -15742604 - MER20 DNA MER1_type -7 212 4 2206 112 0 0 chr12 128044034 128044329 -15742126 - AluSx SINE Alu -17 295 1 602 254 53 43 chr12 128044332 128044541 -15741914 + MIR SINE MIR 40 250 -12 2582 58 3 6 chr12 128045242 128045553 -15740902 + AluY SINE Alu 1 310 -1 1942 123 25 81 chr12 128046745 128046977 -15739478 + MER1B DNA MER1_type 1 208 -2504 2217 121 3 0 chr12 128046977 128047284 -15739171 + AluSx SINE Alu 1 308 -4 1942 123 25 81 chr12 128047284 128047409 -15739046 + MER1B DNA MER1_type 208 338 -1 2361 113 0 0 chr12 128047517 128047817 -15738638 + AluSx SINE Alu 1 300 -12 1828 172 21 0 chr12 128047963 128048253 -15738202 + AluJo SINE Alu 1 296 -16 1712 189 0 28 chr12 128050365 128050683 -15735772 + AluJo SINE Alu 1 309 -3 1330 168 4 38 chr12 128050901 128051139 -15735316 - AluJo SINE Alu -82 230 1 285 287 90 24 chr12 128051471 128051638 -15734817 + L1MEd LINE L1 8 185 -5934 346 248 37 0 chr12 128051810 128051919 -15734536 + L1MEd LINE L1 721 833 -5286 1068 153 37 21 chr12 128052057 128052237 -15734218 + AluJb SINE Alu 114 299 -13 2984 159 12 2 chr12 128052237 128052754 -15733701 + L1MC1 LINE L1 5812 6333 0 256 280 19 9 chr12 128054221 128054328 -15732127 - AluSg SINE Alu -192 108 1 21 0 0 0 chr12 128054760 128054781 -15731674 + AT_rich Low_complexity Low_complexity 1 21 0 2361 82 0 3 chr12 128055011 128055303 -15731152 + AluSx SINE Alu 1 291 -21 2485 81 0 0 chr12 128055429 128055736 -15730719 + AluSg SINE Alu 1 307 -3 437 188 24 0 chr12 128056688 128056773 -15729682 + L1MEd LINE L1 952 1038 -5081 381 282 135 47 chr12 128056776 128056946 -15729509 + MER5A DNA MER1_type 4 188 -1 402 172 91 0 chr12 128056960 128057059 -15729396 + L1MEd LINE L1 1043 1150 -4969 258 286 0 0 chr12 128057308 128057371 -15729084 + L2 LINE L2 3206 3268 -4 28 0 0 0 chr12 128058221 128058249 -15728206 + AT_rich Low_complexity Low_complexity 1 28 0 275 83 0 21 chr12 128058623 128058671 -15727784 - Charlie5 DNA MER1_type -20 2592 2546 2176 97 23 13 chr12 128058675 128058984 -15727471 + AluSx SINE Alu 1 312 0 506 204 33 83 chr12 128059450 128059631 -15726824 - MER5B DNA MER1_type -3 175 4 662 256 6 0 chr12 128060715 128060883 -15725572 - MIR SINE MIR 0 262 94 183 302 57 66 chr12 128061814 128061920 -15724535 - L2 LINE L2 -3 3310 3206 1642 144 11 4 chr12 128062049 128062312 -15724143 + L1PB3 LINE L1 5890 6154 0 1664 168 39 0 chr12 128062341 128062621 -15723834 + AluJb SINE Alu 1 291 -21 1403 152 41 12 chr12 128062632 128062875 -15723580 + MER2 DNA MER2_type 96 345 0 493 204 48 0 chr12 128063237 128063340 -15723115 - L1M4 LINE L1 -6423 119 12 678 197 23 0 chr12 128063359 128063491 -15722964 - AluSg/x SINE Alu -20 292 158 307 292 25 17 chr12 128063912 128064032 -15722423 - L1MEd LINE L1 -5456 663 543 1695 141 0 21 chr12 128064358 128064642 -15721813 - AluSq SINE Alu -2 311 34 294 219 0 37 chr12 128064660 128064742 -15721713 + C-rich Low_complexity Low_complexity 3 81 0 1522 188 4 0 chr12 128066901 128067157 -15719298 - AluJo SINE Alu -16 296 40 183 302 57 66 chr12 128067781 128067887 -15718568 - L2 LINE L2 -3 3310 3206 1642 144 11 4 chr12 128068016 128068279 -15718176 + L1PB3 LINE L1 5890 6154 0 1723 161 27 17 chr12 128068308 128068600 -15717855 + AluJb SINE Alu 1 295 -17 2944 155 14 4 chr12 128068604 128069121 -15717334 + L1MC1 LINE L1 5812 6333 0 355 234 143 70 chr12 128070148 128070434 -15716021 + L1ME4a LINE L1 5813 6119 -2 2331 103 3 0 chr12 128071700 128072000 -15714455 - AluSp SINE Alu -12 301 1 288 179 0 36 chr12 128071965 128072021 -15714434 - AluSg/x SINE Alu -132 168 115 671 260 28 11 chr12 128072404 128072585 -15713870 + MIR SINE MIR 2 185 -77 2312 105 0 6 chr12 128073263 128073576 -15712879 - AluY SINE Alu 0 311 1 2031 112 6 35 chr12 128073617 128073931 -15712524 - AluSg SINE Alu -5 305 1 210 155 17 35 chr12 128074090 128074148 -15712307 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 197 128 21 0 chr12 128074492 128074539 -15711916 + GA-rich Low_complexity Low_complexity 1 48 0 1001 113 184 0 chr12 128074580 128074765 -15711690 + MER20 DNA MER1_type 1 219 0 196 318 16 0 chr12 128074766 128074829 -15711626 - L2 LINE L2 -68 3204 3141 320 211 122 11 chr12 128074865 128074955 -15711500 - MIR SINE MIR -12 250 151 261 317 0 12 chr12 128075046 128075128 -15711327 + MIR SINE MIR 17 97 -165 212 229 0 0 chr12 128076829 128076877 -15709578 - MER5A DNA MER1_type -6 183 136 688 155 23 23 chr12 128076886 128077015 -15709440 + FLAM_C SINE Alu 2 130 -3 451 234 18 45 chr12 128077053 128077164 -15709291 - L2 LINE L2 -24 3289 3182 2283 93 0 13 chr12 128077165 128077466 -15708989 - AluSx SINE Alu -10 302 6 514 229 133 0 chr12 128077469 128077657 -15708798 + L1ME2 LINE L1 5654 5866 -304 292 117 50 50 chr12 128077764 128077824 -15708631 - MADE1 DNA Mariner 0 80 21 183 205 0 0 chr12 128077954 128077993 -15708462 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr12 128078070 128078097 -15708358 + (CA)n Simple_repeat Simple_repeat 1 27 0 1619 184 0 48 chr12 128078219 128078534 -15707921 - AluJb SINE Alu -12 300 1 1912 138 17 14 chr12 128078562 128078858 -15707597 + AluSx SINE Alu 1 297 -15 245 208 179 9 chr12 128079171 128079277 -15707178 - MER113 DNA MER1_type? -397 124 1 1201 165 5 18 chr12 128079491 128079715 -15706740 - AluJb SINE Alu -90 222 2 413 225 0 9 chr12 128080062 128080173 -15706282 - MIR SINE MIR 0 262 153 1572 134 15 30 chr12 128080217 128080486 -15705969 - AluSx SINE Alu -27 285 21 264 352 29 0 chr12 128080487 128080592 -15705863 - MIR SINE MIR -58 150 43 259 235 59 0 chr12 128080731 128080799 -15705656 + L1ME2 LINE L1 6027 6098 -66 1788 52 4 22 chr12 128080820 128081052 -15705403 + AluY SINE Alu 82 309 -2 1744 176 0 19 chr12 128081157 128081469 -15704986 + AluJb SINE Alu 3 308 -4 852 107 13 53 chr12 128081475 128081625 -15704830 + L1MB3 LINE L1 6040 6183 0 207 0 0 0 chr12 128081640 128081663 -15704792 + (CA)n Simple_repeat Simple_repeat 2 24 0 2085 137 3 10 chr12 128082218 128082532 -15703923 - AluSx SINE Alu 0 312 1 1937 166 3 0 chr12 128083354 128083656 -15702799 + AluSx SINE Alu 1 303 -9 2331 92 0 0 chr12 128083656 128083949 -15702506 + AluSx SINE Alu 6 298 -14 580 262 54 54 chr12 128084005 128084299 -15702156 - L1ME LINE L1 -564 5606 5313 289 167 19 0 chr12 128084916 128084970 -15701485 - MER5A DNA MER1_type -126 63 9 1201 179 9 5 chr12 128085097 128085315 -15701140 + MER20 DNA MER1_type 1 219 0 2237 87 7 3 chr12 128085537 128085826 -15700629 + AluY SINE Alu 1 290 -21 435 218 50 0 chr12 128085877 128085978 -15700477 + L1M4 LINE L1 14 119 -6423 842 237 14 72 chr12 128086108 128086399 -15700056 + L1M4 LINE L1 120 393 -6149 1040 129 17 91 chr12 128086427 128086522 -15699933 + MER2 DNA MER2_type 1 101 -244 1889 142 36 0 chr12 128086522 128086803 -15699652 + AluJb SINE Alu 1 291 -21 1040 129 17 91 chr12 128086803 128086939 -15699516 + MER2 DNA MER2_type 101 215 -130 1501 158 25 32 chr12 128087072 128087356 -15699099 - AluSx SINE Alu -7 305 24 268 122 82 0 chr12 128087390 128087439 -15699016 - MLT2B2 LTR ERVL -5 510 458 258 225 42 0 chr12 128087537 128087679 -15698776 + (TA)n Simple_repeat Simple_repeat 2 149 0 1990 85 59 11 chr12 128087720 128087992 -15698463 - AluSx SINE Alu -27 285 1 1316 253 78 3 chr12 128087992 128088364 -15698091 - L1MC4 LINE L1 -334 7708 7309 578 292 22 22 chr12 128088369 128088643 -15697812 - AluJo SINE Alu -8 304 31 1447 199 31 14 chr12 128088780 128089067 -15697388 - AluJo SINE Alu -20 292 1 2169 120 0 7 chr12 128089211 128089512 -15696943 - AluSc SINE Alu -10 299 1 345 298 157 22 chr12 128089594 128089772 -15696683 - L3 LINE CR1 -54 1523 1322 293 284 73 0 chr12 128089867 128089976 -15696479 - MIR SINE MIR -3 259 143 836 96 78 0 chr12 128090046 128090161 -15696294 - FLAM_C SINE Alu -19 124 1 184 336 118 9 chr12 128090258 128090368 -15696087 - L3 LINE CR1 -513 1064 943 591 249 64 71 chr12 128091104 128091385 -15695070 + L2 LINE L2 2866 3144 -169 297 89 0 0 chr12 128091654 128091699 -15694756 + (TG)n Simple_repeat Simple_repeat 2 46 0 1304 170 8 37 chr12 128092196 128092437 -15694018 + AluJo SINE Alu 1 234 -78 1727 186 0 28 chr12 128092763 128093081 -15693374 - AluJo SINE Alu -3 309 1 2287 115 0 0 chr12 128093729 128094034 -15692421 + AluSg SINE Alu 1 305 -5 190 332 168 14 chr12 128094830 128095044 -15691411 - L2 LINE L2 -484 2830 2584 2278 104 10 0 chr12 128095150 128095458 -15690997 + AluY SINE Alu 1 311 0 1087 86 40 0 chr12 128095475 128095627 -15690828 - LTR24C LTR ERV1 -477 158 1 396 175 0 0 chr12 128095849 128095927 -15690528 - AluS SINE Alu 0 302 225 555 277 0 8 chr12 128095959 128096089 -15690366 - L1MC/D LINE L1 -2155 5653 5525 25 0 0 0 chr12 128096093 128096118 -15690337 + AT_rich Low_complexity Low_complexity 1 25 0 585 188 53 23 chr12 128096119 128096252 -15690203 + AluJo SINE Alu 2 138 -174 1011 198 11 0 chr12 128096483 128096665 -15689790 + MER20 DNA MER1_type 36 219 0 330 173 0 0 chr12 128096671 128096723 -15689732 - FLAM_A SINE Alu -4 129 78 336 318 19 24 chr12 128096815 128096993 -15689462 - MLT1K LTR MaLR 0 588 432 228 182 18 91 chr12 128097077 128097132 -15689323 + MER3 DNA MER1_type 43 93 -116 * 1407 153 50 20 chr12 128097100 128097400 -15689055 + MER33 DNA MER1_type 15 323 -1 314 337 58 34 chr12 128097431 128097636 -15688819 - MLT1K LTR MaLR -283 305 96 2339 86 3 0 chr12 128097687 128097979 -15688476 - AluSx SINE Alu -19 293 1 21 0 0 0 chr12 128098064 128098085 -15688370 + AT_rich Low_complexity Low_complexity 1 21 0 2234 196 130 26 chr12 128098622 128099153 -15687302 + MLT1E LTR MaLR 8 593 0 1891 151 7 0 chr12 128099162 128099446 -15687009 + AluJo SINE Alu 1 286 -26 2193 128 0 0 chr12 128100240 128100544 -15685911 - AluSx SINE Alu -8 304 1 1710 159 0 54 chr12 128100552 128100866 -15685589 - AluJo SINE Alu -15 297 1 2198 114 3 7 chr12 128101084 128101381 -15685074 + AluSx SINE Alu 1 296 -16 3372 132 59 6 chr12 128101459 128101983 -15684472 - LTR39 LTR ERV1 0 783 232 2467 87 0 3 chr12 128101994 128102306 -15684149 - AluY SINE Alu 0 311 1 1201 179 9 5 chr12 128102528 128102746 -15683709 - MER20 DNA MER1_type 0 219 1 383 169 102 0 chr12 128102868 128102962 -15683493 + MER5A DNA MER1_type 4 109 -80 390 230 45 30 chr12 128103392 128103586 -15682869 - MIR SINE MIR -12 250 17 2379 92 3 0 chr12 128103816 128104111 -15682344 - AluSp SINE Alu -17 296 1 376 19 38 0 chr12 128104401 128104454 -15682001 + (TG)n Simple_repeat Simple_repeat 1 55 0 2335 63 3 7 chr12 128104480 128104764 -15681691 - AluSx SINE Alu -13 299 17 343 77 0 0 chr12 128106737 128106789 -15679666 + Alu SINE Alu 249 300 -2 1642 143 0 34 chr12 128106823 128107089 -15679366 + AluJo SINE Alu 38 294 -18 2310 99 3 7 chr12 128107287 128107591 -15678864 + AluSq SINE Alu 1 303 -10 1520 186 80 4 chr12 128108217 128108492 -15677963 - AluJb SINE Alu -16 296 1 2094 123 3 19 chr12 128108808 128109117 -15677338 - AluSx SINE Alu -8 304 1 4357 135 70 97 chr12 128109150 128110088 -15676367 - MER21A LTR ERV1 -6 925 13 2237 100 0 26 chr12 128110573 128110884 -15675571 + AluSc SINE Alu 1 303 -6 455 275 94 53 chr12 128111872 128112281 -15674174 + L1MC4a LINE L1 5564 5986 -135 318 307 31 0 chr12 128112437 128112564 -15673891 + MIR SINE MIR 99 229 -33 2618 68 0 0 chr12 128113204 128113512 -15672943 + AluSc SINE Alu 1 308 -1 227 229 0 0 chr12 128114930 128114978 -15671477 - MER5A DNA MER1_type -6 183 136 688 155 23 23 chr12 128114987 128115116 -15671339 + FLAM_C SINE Alu 2 130 -3 437 243 18 45 chr12 128115154 128115265 -15671190 - L2 LINE L2 -24 3289 3182 2390 89 0 10 chr12 128115266 128115570 -15670885 - AluSx SINE Alu -10 302 2 219 292 31 10 chr12 128115654 128115750 -15670705 + MER5A DNA MER1_type 70 167 -22 669 259 0 15 chr12 128116885 128117082 -15669373 - LTR33 LTR ERVL 0 521 328 725 106 21 84 chr12 128117162 128117235 -15669220 + MER5A DNA MER1_type 1 62 -127 1688 200 0 3 chr12 128117235 128117535 -15668920 + AluJo SINE Alu 1 299 -13 725 106 21 84 chr12 128117535 128117603 -15668852 + MER5A DNA MER1_type 62 133 -56 2284 114 0 0 chr12 128118378 128118675 -15667780 - AluSx SINE Alu -15 297 1 844 251 100 72 chr12 128118696 128119087 -15667368 + MLT1J LTR MaLR 1 402 -109 277 111 37 37 chr12 128119085 128119139 -15667316 + MLT1J1 LTR MaLR 393 446 0 * 355 245 14 83 chr12 128119199 128119247 -15667208 - MIR SINE MIR -63 145 95 1790 112 4 30 chr12 128119247 128119549 -15666906 - AluSx SINE Alu 0 315 21 355 245 14 83 chr12 128119549 128119655 -15666800 - MIR SINE MIR -113 95 43 259 235 59 0 chr12 128119794 128119862 -15666593 + L1ME2 LINE L1 6027 6098 -66 1669 71 0 5 chr12 128119883 128120093 -15666362 + AluY SINE Alu 82 290 -21 2250 117 7 0 chr12 128120219 128120526 -15665929 + AluJb SINE Alu 1 309 -3 2109 117 3 3 chr12 128121768 128122051 -15664404 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr12 128122051 128122075 -15664380 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 886 215 77 19 chr12 128122136 128122396 -15664059 + ORSL DNA AcHobo 1 275 0 21 0 0 0 chr12 128123138 128123159 -15663296 + AT_rich Low_complexity Low_complexity 1 21 0 2292 103 0 0 chr12 128123167 128123458 -15662997 + AluSg SINE Alu 1 291 -19 1767 201 6 14 chr12 128124742 128125086 -15661369 - MER58B DNA MER1_type 0 341 1 248 242 0 16 chr12 128125214 128125276 -15661179 + CT-rich Low_complexity Low_complexity 1 61 0 182 37 37 0 chr12 128127167 128127194 -15659261 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 2616 138 64 58 chr12 128128005 128128397 -15658058 + MLT1D LTR MaLR 3 400 -105 2062 118 0 51 chr12 128128397 128128710 -15657745 - AluSx SINE Alu -14 298 2 2616 138 64 58 chr12 128128710 128128817 -15657638 + MLT1D LTR MaLR 400 505 0 480 143 41 10 chr12 128128923 128129021 -15657434 - MIR SINE MIR -68 194 94 1585 156 0 108 chr12 128129671 128129813 -15656642 + AluJo SINE Alu 1 88 -214 1799 145 43 0 chr12 128129813 128130089 -15656366 - AluJb SINE Alu -24 288 1 1585 156 0 108 chr12 128130089 128130279 -15656176 + AluJo SINE Alu 88 297 -5 694 78 20 0 chr12 128130282 128130384 -15656071 + AluY SINE Alu 2 105 -206 1835 161 3 10 chr12 128130852 128131143 -15655312 + AluJo SINE Alu 1 289 -23 286 193 133 0 chr12 128131763 128131846 -15654609 + L1MB4 LINE L1 5381 5474 -709 184 111 81 20 chr12 128131880 128131979 -15654476 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 2832 173 67 39 chr12 128131979 128132458 -15653997 + L1MB4 LINE L1 5479 5982 -198 2171 114 0 19 chr12 128132458 128132790 -15653665 + AluSx SINE Alu 1 312 0 2832 173 67 39 chr12 128132790 128132952 -15653503 + L1MB4 LINE L1 5982 6138 -42 2083 119 7 3 chr12 128132954 128133249 -15653206 + AluSx SINE Alu 1 296 -16 2070 135 23 0 chr12 128134602 128134906 -15651549 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 128135136 128135157 -15651298 + AT_rich Low_complexity Low_complexity 1 21 0 2209 77 0 18 chr12 128135592 128135903 -15650552 + AluY SINE Alu 1 306 0 575 241 31 52 chr12 128136055 128136123 -15650332 - MIR SINE MIR 0 262 194 724 223 6 11 chr12 128136123 128136298 -15650157 - MER104 DNA MER2_type -3 177 4 575 241 31 52 chr12 128136298 128136420 -15650035 - MIR SINE MIR -68 194 76 306 0 0 0 chr12 128136549 128136583 -15649872 + (TA)n Simple_repeat Simple_repeat 1 34 0 2246 119 3 0 chr12 128136631 128136934 -15649521 - AluSx SINE Alu -8 304 1 411 178 22 78 chr12 128137083 128137173 -15649282 + MLT1A1 LTR MaLR 1 85 -280 2070 114 43 7 chr12 128137178 128137477 -15648978 + AluSx SINE Alu 1 310 -2 1950 141 7 0 chr12 128137558 128137841 -15648614 + AluSg SINE Alu 3 287 -23 1968 147 31 0 chr12 128137943 128138235 -15648220 + AluJb SINE Alu 2 302 -10 1765 151 4 0 chr12 128138304 128138562 -15647893 - AluJo SINE Alu -53 259 1 1674 155 3 42 chr12 128139415 128139699 -15646756 + AluJo SINE Alu 1 273 -39 2064 122 14 3 chr12 128139704 128139998 -15646457 - AluSx SINE Alu -15 297 1 2407 78 0 7 chr12 128140699 128140994 -15645461 - AluY SINE Alu -18 293 1 2124 138 0 0 chr12 128141002 128141298 -15645157 - AluSx SINE Alu -16 296 1 342 318 18 9 chr12 128141395 128141505 -15644950 + MIR SINE MIR 33 143 -65 222 191 0 0 chr12 128141584 128141631 -15644824 + CT-rich Low_complexity Low_complexity 1 47 0 2607 48 0 7 chr12 128142786 128143096 -15643359 - AluY SINE Alu -3 308 1 1621 185 32 0 chr12 128143526 128143807 -15642648 + AluJb SINE Alu 1 290 -22 1029 147 47 0 chr12 128143884 128144054 -15642401 - MER20 DNA MER1_type -11 208 31 582 15 0 0 chr12 128145277 128145344 -15641111 + (TTCTC)n Simple_repeat Simple_repeat 2 68 0 2264 86 4 0 chr12 128145348 128145628 -15640827 - AluSx SINE Alu -31 281 1 280 217 0 0 chr12 128145631 128145691 -15640764 - L1ME LINE L1 -345 5821 5762 198 0 0 0 chr12 128146109 128146131 -15640324 + (TA)n Simple_repeat Simple_repeat 2 23 0 1438 166 25 4 chr12 128146211 128146452 -15640003 - AluJo SINE Alu -34 278 33 649 234 41 0 chr12 128146461 128146632 -15639823 - L1ME LINE L1 -1988 5820 5643 4719 26 0 2 chr12 128146632 128147175 -15639280 - L1PA4 LINE L1 -5 6150 5609 1355 7 0 0 chr12 128147175 128147324 -15639131 + L1PA4 LINE L1 5476 5624 -531 538 282 158 23 chr12 128147323 128147589 -15638866 - L1ME LINE L1 -2155 5653 5352 * 1534 173 4 0 chr12 128147615 128147864 -15638591 - AluJb SINE Alu -16 296 47 1512 108 5 27 chr12 128147972 128148146 -15638309 - AluSg/x SINE Alu -6 304 128 262 0 26 26 chr12 128148146 128148185 -15638270 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2244 48 44 4 chr12 128148185 128148456 -15637999 - AluY SINE Alu -29 282 1 1512 108 5 27 chr12 128148456 128148502 -15637953 - AluSg/x SINE Alu -180 130 88 2213 111 7 3 chr12 128148560 128148867 -15637588 - AluSx SINE Alu -4 308 1 1980 199 63 2 chr12 128148867 128149278 -15637177 - L1MB7 LINE L1 -126 6058 5623 1114 146 45 59 chr12 128149424 128149583 -15636872 - MER20 DNA MER1_type 0 219 62 2369 92 0 7 chr12 128149583 128149888 -15636567 + AluSx SINE Alu 1 303 -9 1114 146 45 59 chr12 128149888 128149948 -15636507 - MER20 DNA MER1_type -157 62 3 331 237 130 43 chr12 128150564 128150825 -15635630 - MLT1H LTR MaLR 0 549 242 6658 45 2 16 chr12 128150859 128151660 -15634795 - SVA Other Other 0 1386 597 22 0 0 0 chr12 128151740 128151762 -15634693 + GC_rich Low_complexity Low_complexity 1 22 0 395 173 18 1 chr12 128151993 128152093 -15634362 - AluJ/FLAM SINE Alu -237 65 1 184 250 0 50 chr12 128152358 128152418 -15634037 - MIR SINE MIR -2 260 204 492 134 118 84 chr12 128152420 128152507 -15633948 + MLT1D LTR MaLR 1 95 -410 1942 145 3 7 chr12 128152507 128152810 -15633645 + AluSx SINE Alu 1 302 -10 492 134 118 84 chr12 128152810 128152841 -15633614 + MLT1D LTR MaLR 95 123 -382 1989 125 17 14 chr12 128152841 128153137 -15633318 + AluSx SINE Alu 1 297 -15 281 206 168 9 chr12 128153450 128153557 -15632898 - MER113 DNA MER1_type? -397 124 1 343 341 106 18 chr12 128153569 128153739 -15632716 - MIR SINE MIR -76 186 2 710 239 0 38 chr12 128153969 128154113 -15632342 - MER5B DNA MER1_type 0 178 41 2353 101 51 25 chr12 128154113 128154468 -15631987 + THE1B LTR MaLR 1 364 0 710 239 0 38 chr12 128154468 128154507 -15631948 - MER5B DNA MER1_type -137 41 2 209 264 19 0 chr12 128154908 128154961 -15631494 + CT-rich Low_complexity Low_complexity 2 55 0 2064 124 0 32 chr12 128155002 128155317 -15631138 + AluSx SINE Alu 1 305 -7 1863 202 22 0 chr12 128155531 128155967 -15630488 + L1M4 LINE L1 5203 5648 -530 338 171 14 3 chr12 128155969 128156054 -15630401 + AluS SINE Alu 1 68 -233 1253 193 47 0 chr12 128156178 128156453 -15630002 - AluSc SINE Alu -11 288 1 1747 149 76 3 chr12 128156532 128156821 -15629634 - AluSx SINE Alu -2 310 1 2065 91 0 4 chr12 128156904 128157167 -15629288 - AluSx SINE Alu -2 310 49 292 218 0 51 chr12 128157219 128157297 -15629158 - MLT1K LTR MaLR -327 261 188 1670 173 0 4 chr12 128157353 128157659 -15628796 - AluSx SINE Alu 0 318 14 2067 121 0 7 chr12 128157903 128158193 -15628262 - AluSx SINE Alu -15 297 10 297 197 0 49 chr12 128158413 128158474 -15627981 - LTR67 LTR ERVL 0 557 500 220 293 0 0 chr12 128158482 128158540 -15627915 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1801 154 7 7 chr12 128158620 128158913 -15627542 + AluJb SINE Alu 9 301 -11 641 253 16 21 chr12 128158919 128159109 -15627346 + MLT1H LTR MaLR 44 232 -317 677 106 0 0 chr12 128159133 128159227 -15627228 + (C)n Simple_repeat Simple_repeat 1 94 0 88 52 0 0 chr12 128159227 128159342 -15627113 + GC_rich Low_complexity Low_complexity 1 115 0 2356 60 0 53 chr12 128160178 128160497 -15625958 + AluY SINE Alu 1 302 -9 359 289 58 31 chr12 128160757 128160820 -15625635 + L1ME4a LINE L1 5880 5940 -181 2262 94 7 7 chr12 128160820 128161119 -15625336 + AluSc SINE Alu 1 299 -10 359 289 58 31 chr12 128161119 128161280 -15625175 + L1ME4a LINE L1 5940 6110 -11 24 0 0 0 chr12 128161519 128161543 -15624912 + AT_rich Low_complexity Low_complexity 1 24 0 2068 130 7 7 chr12 128161763 128162055 -15624400 - AluJo SINE Alu -20 292 1 2320 71 0 4 chr12 128162381 128162661 -15623794 + AluY SINE Alu 21 299 -12 269 249 94 78 chr12 128163193 128163338 -15623117 + MIR SINE MIR 32 173 -61 1029 166 55 9 chr12 128163645 128163862 -15622593 + L1MA9 LINE L1 6086 6312 0 1726 121 62 7 chr12 128163918 128164191 -15622264 + AluSq SINE Alu 1 288 -25 422 257 92 9 chr12 128164204 128164313 -15622142 + MER103 DNA DNA 1 118 -48 708 190 0 63 chr12 128164996 128165138 -15621317 - FLAM_A SINE Alu 0 133 1 2059 126 3 10 chr12 128165163 128165472 -15620983 - AluSx SINE Alu -5 307 1 309 216 68 0 chr12 128166290 128166364 -15620091 + MIR SINE MIR 88 166 -96 2187 104 27 3 chr12 128166543 128166841 -15619614 + AluSg SINE Alu 1 305 -5 2242 126 0 0 chr12 128167728 128168030 -15618425 + AluSx SINE Alu 2 303 -9 314 203 27 0 chr12 128168163 128168237 -15618218 - L1MA10 LINE L1 -1 6333 6258 308 250 0 0 chr12 128168447 128168515 -15617940 - LTR41 LTR ERVL -597 176 109 2489 52 7 13 chr12 128168515 128168823 -15617632 + AluY SINE Alu 1 306 -5 1329 164 139 8 chr12 128168887 128169015 -15617440 + AluSg1 SINE Alu 1 111 -198 234 0 0 0 chr12 128169015 128169041 -15617414 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1329 164 139 8 chr12 128169041 128169156 -15617299 + AluSg1 SINE Alu 111 276 -33 204 40 0 0 chr12 128169158 128169183 -15617272 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 128169185 128169207 -15617248 + AT_rich Low_complexity Low_complexity 1 22 0 3237 246 105 26 chr12 128169267 128169565 -15616890 - L1MDa LINE L1 -4862 1353 1080 2093 124 0 3 chr12 128169565 128169867 -15616588 - AluSx SINE Alu 0 301 1 3237 246 105 26 chr12 128169867 128170051 -15616404 - L1MDa LINE L1 -5135 1080 912 2169 124 3 7 chr12 128170051 128170358 -15616097 - AluSx SINE Alu -6 306 1 3237 246 105 26 chr12 128170358 128170552 -15615903 - L1MDa LINE L1 -5303 912 735 1201 116 156 0 chr12 128170552 128170751 -15615704 - MER30 DNA MER1_type 0 230 1 3237 246 105 26 chr12 128170751 128171276 -15615179 - L1MDa LINE L1 -5480 735 36 238 207 0 17 chr12 128171303 128171361 -15615094 - L1MC4 LINE L1 -376 7666 7610 324 111 61 0 chr12 128171361 128171460 -15614995 + (TA)n Simple_repeat Simple_repeat 1 105 0 771 165 0 0 chr12 128171460 128171581 -15614874 - FLAM_C SINE Alu -20 123 3 351 256 26 60 chr12 128171728 128171845 -15614610 - MER58C DNA MER1_type 0 215 103 298 122 40 0 chr12 128171855 128171929 -15614526 + T-rich Low_complexity Low_complexity 2 78 0 2336 114 0 0 chr12 128171933 128172240 -15614215 - AluSx SINE Alu -3 309 3 1109 151 159 44 chr12 128172702 128172954 -15613501 - AluJo SINE Alu -21 291 11 1254 191 0 5 chr12 128172985 128173195 -15613260 - AluJb SINE Alu -20 292 84 868 119 8 22 chr12 128173957 128174091 -15612364 + AluJb SINE Alu 153 315 0 259 32 0 0 chr12 128174091 128174122 -15612333 + (CAAA)n Simple_repeat Simple_repeat 2 164 0 2031 161 0 0 chr12 128174724 128175029 -15611426 + AluJb SINE Alu 1 305 -7 841 100 0 6 chr12 128175117 128175368 -15611087 + AluSx SINE Alu 1 298 -11 2144 103 10 3 chr12 128175604 128175896 -15610559 - AluSx SINE Alu -18 294 1 441 302 29 41 chr12 128175908 128176080 -15610375 + LTR16A LTR ERVL 203 372 -78 1564 144 0 42 chr12 128176108 128176308 -15610147 - AluJb SINE Alu -60 252 64 1579 85 5 0 chr12 128176308 128176509 -15609946 + AluSp SINE Alu 94 295 -18 1564 144 0 42 chr12 128176509 128176571 -15609884 - AluJb SINE Alu -248 64 1 1469 212 10 3 chr12 128177022 128177315 -15609140 + AluJo SINE Alu 1 295 -17 1586 127 54 137 chr12 128177382 128177580 -15608875 + THE1C LTR MaLR 1 149 -226 2043 130 0 3 chr12 128177580 128177865 -15608590 - AluSx SINE Alu -28 284 1 1586 127 54 137 chr12 128177865 128178075 -15608380 + THE1C LTR MaLR 149 375 0 292 221 0 29 chr12 128178095 128178163 -15608292 - L2 LINE L2 0 3313 3248 1640 236 14 53 chr12 128178656 128178833 -15607622 + LTR16C LTR ERVL 72 254 -237 2495 91 0 0 chr12 128178833 128179141 -15607314 + AluSx SINE Alu 1 308 -4 1640 236 14 53 chr12 128179141 128179400 -15607055 + LTR16C LTR ERVL 254 491 0 200 74 0 0 chr12 128179617 128179644 -15606811 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 183 80 0 0 chr12 128180886 128180911 -15605544 + (GGGAA)n Simple_repeat Simple_repeat 4 28 0 2285 103 0 10 chr12 128181144 128181444 -15605011 + AluSx SINE Alu 1 297 -15 396 0 0 0 chr12 128181555 128181599 -15604856 + (TG)n Simple_repeat Simple_repeat 2 45 0 2241 97 0 0 chr12 128181599 128181877 -15604578 - AluSx SINE Alu -34 278 1 257 256 49 37 chr12 128182085 128182167 -15604288 - MIR3 SINE MIR -49 159 77 2250 98 3 0 chr12 128182532 128182819 -15603636 + AluSc SINE Alu 6 293 -16 800 115 39 23 chr12 128182832 128182962 -15603493 + FLAM_C SINE Alu 1 132 -1 3028 204 40 9 chr12 128184005 128184550 -15601905 - L1MB7 LINE L1 -10 6174 5604 1822 147 70 0 chr12 128184550 128184835 -15601620 - AluJo SINE Alu -7 305 1 3028 204 40 9 chr12 128184835 128184935 -15601520 - L1MB7 LINE L1 -580 5604 5509 2343 66 0 14 chr12 128184996 128185311 -15601144 - AluY SINE Alu 0 311 1 238 229 236 36 chr12 128185522 128185609 -15600846 + MIR SINE MIR 95 163 -99 1505 170 4 12 chr12 128185609 128185862 -15600593 + AluJo SINE Alu 47 297 -15 238 229 236 36 chr12 128185862 128185914 -15600541 + MIR SINE MIR 163 262 0 822 194 41 18 chr12 128186207 128186377 -15600078 - MER5B DNA MER1_type -2 176 3 234 245 113 113 chr12 128186666 128186870 -15599585 + MIR SINE MIR 4 207 -55 2645 46 0 0 chr12 128186879 128187182 -15599273 + AluYa5 SINE Alu 1 303 -8 1265 160 0 0 chr12 128187201 128187389 -15599066 + 7SLRNA srpRNA srpRNA 124 311 -9 685 154 0 70 chr12 128187721 128187864 -15598591 - FLAM_A SINE Alu 0 133 1 815 213 84 141 chr12 128188145 128188946 -15597509 + L1MC4 LINE L1 6640 7399 -643 344 217 14 0 chr12 128189046 128189115 -15597340 + MER58 DNA MER1_type 44 113 -102 1959 136 3 3 chr12 128189124 128189410 -15597045 + AluSx SINE Alu 8 293 -19 2313 94 0 10 chr12 128189420 128189719 -15596736 + AluSx SINE Alu 1 296 -16 1791 179 0 7 chr12 128189733 128190024 -15596431 + AluJo SINE Alu 1 289 -23 2239 108 0 3 chr12 128190034 128190329 -15596126 + AluSg SINE Alu 1 294 -16 1889 136 23 29 chr12 128190332 128190641 -15595814 + AluSx SINE Alu 1 307 -5 242 276 50 44 chr12 128190662 128190843 -15595612 + L1ME4a LINE L1 5936 6117 -4 2260 105 0 7 chr12 128190877 128191183 -15595272 + AluSq SINE Alu 1 304 -9 352 148 0 0 chr12 128192888 128192949 -15593506 + AluSp/q SINE Alu 240 300 -3 555 329 52 5 chr12 128193125 128193338 -15593117 + MIR SINE MIR 25 247 -15 253 375 102 25 chr12 128193919 128194242 -15592213 - L2 LINE L2 -1 3271 2924 3244 22 0 0 chr12 128194734 128195105 -15591350 - L1P LINE L1 -1193 4953 4583 7892 19 5 0 chr12 128195105 128196055 -15590400 + L1PA3 LINE L1 5197 6150 -5 628 229 64 6 chr12 128196566 128196739 -15589716 - MIR SINE MIR -24 238 57 269 219 62 0 chr12 128197580 128197644 -15588811 + MIR3 SINE MIR 118 185 -23 409 259 29 7 chr12 128197741 128197880 -15588575 - MIR SINE MIR -43 219 78 23 0 0 0 chr12 128198104 128198127 -15588328 + AT_rich Low_complexity Low_complexity 1 23 0 593 191 0 9 chr12 128198312 128198417 -15588038 - FAM SINE Alu -15 170 67 411 216 52 0 chr12 128198557 128198654 -15587801 + U13 snRNA snRNA 1 102 -2 340 199 110 88 chr12 128198729 128198865 -15587590 + MIR3 SINE MIR 68 206 -2 203 275 29 14 chr12 128198880 128198949 -15587506 + L2 LINE L2 3234 3303 -10 213 333 67 0 chr12 128199115 128199235 -15587220 - L2 LINE L2 -41 3272 3145 474 270 119 18 chr12 128199622 128199992 -15586463 - L1MEd LINE L1 -4864 1255 950 1478 187 63 44 chr12 128199995 128200382 -15586073 - L1ME LINE L1 -572 5592 5201 2644 61 0 3 chr12 128200382 128200694 -15585761 - AluY SINE Alu 0 311 1 1478 187 63 44 chr12 128200694 128200748 -15585707 - L1ME LINE L1 -963 5201 5149 1778 160 38 3 chr12 128200771 128201059 -15585396 - AluSx SINE Alu -14 298 1 374 264 71 89 chr12 128201059 128201159 -15585296 - L1MEd LINE L1 -5164 955 855 2144 108 0 51 chr12 128201159 128201473 -15584982 - AluSg SINE Alu -12 298 1 374 264 71 89 chr12 128201473 128201766 -15584689 - L1MEd LINE L1 -5264 855 569 * 1340 217 24 3 chr12 128201765 128202055 -15584400 - L1MD3 LINE L1 -18 7977 7682 2154 98 0 11 chr12 128202055 128202371 -15584084 - AluSx SINE Alu 0 313 1 2058 136 3 0 chr12 128202379 128202666 -15583789 - AluJo SINE Alu -24 288 1 2195 189 49 4 chr12 128202666 128202992 -15583463 - L1MB2 LINE L1 -39 6132 5774 531 0 0 0 chr12 128202992 128203051 -15583404 + (TA)n Simple_repeat Simple_repeat 1 59 0 2195 189 49 4 chr12 128203051 128203187 -15583268 - L1MB2 LINE L1 -397 5774 5646 711 206 0 0 chr12 128203323 128203449 -15583006 + FLAM_C SINE Alu 1 126 -7 1908 155 0 3 chr12 128203719 128204027 -15582428 + AluJb SINE Alu 1 307 0 2208 99 0 3 chr12 128204027 128204320 -15582135 + AluSg SINE Alu 2 293 -17 2461 96 0 0 chr12 128204772 128205084 -15581371 + AluSx SINE Alu 1 312 0 507 275 54 7 chr12 128205511 128205660 -15580795 + MIR SINE MIR 31 186 -76 502 296 21 0 chr12 128205754 128205896 -15580559 - L2 LINE L2 -215 3057 2913 715 165 15 0 chr12 128205902 128206035 -15580420 + L1MA8 LINE L1 6005 6139 -152 1709 134 60 14 chr12 128206035 128206318 -15580137 + AluSg SINE Alu 1 296 -14 2241 108 13 0 chr12 128206319 128206625 -15579830 + AluSg SINE Alu 1 310 0 1841 173 10 3 chr12 128206657 128206957 -15579498 + AluSx SINE Alu 1 302 -10 2113 121 7 0 chr12 128207184 128207482 -15578973 + AluSx SINE Alu 13 312 0 3372 132 59 6 chr12 128207493 128208017 -15578438 + LTR39 LTR ERV1 232 783 0 2198 114 3 7 chr12 128208095 128208392 -15578063 - AluSx SINE Alu -16 296 1 1710 159 0 54 chr12 128208610 128208924 -15577531 + AluJo SINE Alu 1 297 -15 2193 128 0 0 chr12 128208932 128209236 -15577219 + AluSx SINE Alu 1 304 -8 1891 151 7 0 chr12 128210030 128210314 -15576141 - AluJo SINE Alu -26 286 1 2234 196 130 26 chr12 128210323 128210854 -15575601 - MLT1E LTR MaLR 0 593 8 21 0 0 0 chr12 128211391 128211412 -15575043 + AT_rich Low_complexity Low_complexity 1 21 0 2339 86 3 0 chr12 128211497 128211789 -15574666 + AluSx SINE Alu 1 293 -19 314 337 58 34 chr12 128211840 128212045 -15574410 + MLT1K LTR MaLR 96 305 -283 1407 153 50 20 chr12 128212076 128212376 -15574079 - MER33 DNA MER1_type -1 323 15 228 182 18 91 chr12 128212344 128212399 -15574056 - MER3 DNA MER1_type -116 93 43 * 336 318 19 24 chr12 128212483 128212661 -15573794 + MLT1K LTR MaLR 432 588 0 330 173 0 0 chr12 128212753 128212805 -15573650 + FLAM_A SINE Alu 78 129 -4 1011 198 11 0 chr12 128212811 128212993 -15573462 - MER20 DNA MER1_type 0 219 36 585 188 53 23 chr12 128213224 128213357 -15573098 - AluJo SINE Alu -174 138 2 25 0 0 0 chr12 128213358 128213383 -15573072 + AT_rich Low_complexity Low_complexity 1 25 0 555 277 0 8 chr12 128213387 128213517 -15572938 + L1MC/D LINE L1 5525 5653 -2155 397 175 0 0 chr12 128213549 128213627 -15572828 + AluS SINE Alu 224 301 0 1115 79 40 0 chr12 128213848 128214000 -15572455 + LTR24C LTR ERV1 1 158 -477 2499 78 7 0 chr12 128214017 128214326 -15572129 - AluY SINE Alu 0 311 1 493 194 11 144 chr12 128215038 128215103 -15571352 - MER5B DNA MER1_type 0 178 106 2123 147 0 0 chr12 128215103 128215409 -15571046 + AluSq SINE Alu 1 306 -7 493 194 11 144 chr12 128215409 128215421 -15571034 - MER5B DNA MER1_type -72 106 94 1743 139 50 4 chr12 128215421 128215701 -15570754 + AluJb SINE Alu 1 293 -19 493 194 11 144 chr12 128215701 128215802 -15570653 - MER5B DNA MER1_type -84 94 23 332 291 50 28 chr12 128215803 128215944 -15570511 - MER5A DNA MER1_type -11 178 35 1185 220 48 17 chr12 128216288 128216579 -15569876 - MLT1E1 LTR MaLR -66 588 289 2200 134 0 0 chr12 128216746 128217052 -15569403 + AluSx SINE Alu 1 306 -6 520 245 80 51 chr12 128217053 128217290 -15569165 - MIR SINE MIR -16 246 3 877 205 113 135 chr12 128217371 128217928 -15568527 - L1ME3A LINE L1 -30 6140 5596 368 231 0 83 chr12 128217906 128218014 -15568441 - L1ME LINE L1 -431 5690 5592 * 2335 108 0 0 chr12 128218286 128218583 -15567872 + AluSx SINE Alu 1 297 -15 255 279 0 0 chr12 128218821 128218882 -15567573 + L2 LINE L2 3207 3267 -5 389 248 85 19 chr12 128220435 128220612 -15565843 + MIR SINE MIR 75 256 -6 2281 86 3 13 chr12 128220708 128221010 -15565445 + AluSx SINE Alu 1 299 -13 2543 78 0 3 chr12 128221051 128221360 -15565095 + AluSg SINE Alu 1 308 -2 1938 136 40 3 chr12 128221785 128222086 -15564369 - AluSx SINE Alu 0 312 1 2091 123 36 0 chr12 128222109 128222410 -15564045 - AluSx SINE Alu 0 312 1 1269 233 56 124 chr12 128222416 128223490 -15562965 + L2 LINE L2 2275 3283 -30 1976 139 10 3 chr12 128223886 128224181 -15562274 + AluSx SINE Alu 1 297 -15 1715 171 10 3 chr12 128224217 128224509 -15561946 + AluJb SINE Alu 1 294 -18 409 172 0 61 chr12 128224430 128224529 -15561926 + AluSg/x SINE Alu 214 306 -3 290 274 68 113 chr12 128224665 128224931 -15561524 - L2 LINE L2 -89 3183 2930 1753 192 16 0 chr12 128225061 128225368 -15561087 + AluJo SINE Alu 1 312 0 206 268 0 0 chr12 128225500 128225541 -15560914 - L2 LINE L2 -87 3185 3145 865 154 11 63 chr12 128225756 128225931 -15560524 + FRAM SINE Alu 1 166 0 357 165 25 25 chr12 128225958 128226037 -15560418 + Charlie4a DNA MER1_type 65 143 -365 1414 153 0 4 chr12 128226045 128226280 -15560175 - AluJb SINE Alu -8 304 71 841 196 52 6 chr12 128226280 128226453 -15560002 + Charlie4a DNA MER1_type 155 335 -173 566 144 16 24 chr12 128226493 128226618 -15559837 + Charlie4a DNA MER1_type 325 448 -60 1942 115 3 19 chr12 128226618 128226831 -15559624 + AluSx SINE Alu 5 213 -99 2868 76 0 0 chr12 128226831 128227186 -15559269 - THE1A LTR MaLR 0 355 1 1942 115 3 19 chr12 128227186 128227285 -15559170 + AluSx SINE Alu 213 312 0 228 259 24 35 chr12 128227293 128227378 -15559077 + Charlie4a DNA MER1_type 425 508 0 410 200 22 33 chr12 128227433 128227523 -15558932 + ORSL DNA AcHobo 1 89 -186 1744 177 0 0 chr12 128227523 128227822 -15558633 + AluSq SINE Alu 1 299 -14 1229 137 5 10 chr12 128227823 128228020 -15558435 + AluJo SINE Alu 96 291 -21 198 0 0 0 chr12 128228020 128228042 -15558413 + (TA)n Simple_repeat Simple_repeat 2 23 0 1343 166 25 4 chr12 128228122 128228363 -15558092 - AluJo SINE Alu -34 278 33 638 234 41 0 chr12 128228372 128228543 -15557912 - L1MC/D LINE L1 -1988 5820 5643 4683 28 0 2 chr12 128228543 128229086 -15557369 - L1PA4 LINE L1 -5 6150 5609 1355 7 0 0 chr12 128229086 128229235 -15557220 + L1PA4 LINE L1 5476 5624 -531 523 267 169 34 chr12 128229234 128229500 -15556955 - L1MC/D LINE L1 -2155 5653 5352 * 1443 175 4 0 chr12 128229523 128229775 -15556680 - AluJb SINE Alu -13 299 47 1419 113 5 27 chr12 128229883 128230057 -15556398 - AluSg/x SINE Alu -6 306 130 262 0 26 26 chr12 128230057 128230096 -15556359 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2119 48 44 4 chr12 128230096 128230367 -15556088 - AluY SINE Alu -29 282 1 1419 113 5 27 chr12 128230367 128230413 -15556042 - AluSg/x SINE Alu -180 132 90 2954 166 62 49 chr12 128230424 128230471 -15555984 - L1MB4 LINE L1 -1 6179 6134 2076 90 30 0 chr12 128230471 128230770 -15555685 - AluSx SINE Alu -4 308 1 2954 166 62 49 chr12 128230770 128230934 -15555521 - L1MB4 LINE L1 -46 6134 5974 2043 114 0 19 chr12 128230934 128231266 -15555189 - AluSx SINE Alu 0 312 1 2954 166 62 49 chr12 128231266 128231745 -15554710 - L1MB4 LINE L1 -206 5974 5479 184 111 81 20 chr12 128231745 128231844 -15554611 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 282 193 133 0 chr12 128231878 128231961 -15554494 - L1MB4 LINE L1 -709 5474 5381 1719 161 3 10 chr12 128232582 128232873 -15553582 - AluJo SINE Alu -23 289 1 486 291 82 7 chr12 128233746 128233913 -15552542 - MIR3 SINE MIR -32 176 3 378 280 10 0 chr12 128233938 128234038 -15552417 + MLT1J1 LTR MaLR 346 446 0 218 262 229 0 chr12 128234276 128234337 -15552118 - MIR3 SINE MIR -20 188 114 879 248 190 3 chr12 128234358 128234646 -15551809 + MLT1J1 LTR MaLR 1 328 -122 192 267 0 0 chr12 128234889 128234934 -15551521 + MIR SINE MIR 90 134 -128 2177 73 17 0 chr12 128236440 128236729 -15549726 + AluSq SINE Alu 1 294 -19 2085 110 3 26 chr12 128236738 128237047 -15549408 + AluSx SINE Alu 1 302 -10 708 169 111 21 chr12 128237047 128237468 -15548987 + L1MC3 LINE L1 7086 7507 -286 362 184 0 23 chr12 128237468 128237555 -15548900 + GA-rich Low_complexity Low_complexity 3 87 0 341 216 0 0 chr12 128237548 128237592 -15548863 + G-rich Low_complexity Low_complexity 4 47 -53 * 1893 89 9 76 chr12 128237592 128237908 -15548547 + AluSx SINE Alu 18 312 0 341 216 0 0 chr12 128237908 128237960 -15548495 + G-rich Low_complexity Low_complexity 46 100 0 465 137 0 14 chr12 128237965 128238038 -15548417 + MLT1A1 LTR MaLR 153 224 -141 2399 64 0 10 chr12 128239186 128239500 -15546955 - AluY SINE Alu 0 311 1 187 300 0 0 chr12 128239608 128239658 -15546797 + MIR SINE MIR 2 51 -211 2130 128 0 0 chr12 128240031 128240336 -15546119 - AluSx SINE Alu -7 305 1 1333 258 28 40 chr12 128240544 128240943 -15545512 - LTR16A LTR ERVL -38 412 19 380 70 0 0 chr12 128241049 128241106 -15545349 - L1MB4 LINE L1 0 6180 6124 1822 132 7 3 chr12 128241118 128241405 -15545050 - AluSx SINE Alu -21 291 4 236 65 0 0 chr12 128243001 128243032 -15543423 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 529 158 0 150 chr12 128243036 128243290 -15543165 - AluJb SINE Alu -27 285 70 969 59 0 0 chr12 128243618 128243753 -15542702 + L1P LINE L1 5240 5374 -772 185 0 40 0 chr12 128243776 128243801 -15542654 + (TTA)n Simple_repeat Simple_repeat 2 27 0 663 162 17 0 chr12 128244782 128244899 -15541556 + AluSp/q SINE Alu 188 306 -7 321 244 178 28 chr12 128244899 128245079 -15541376 + L1MC4a LINE L1 5821 6027 -1781 2169 65 65 3 chr12 128246534 128246827 -15539628 + AluY SINE Alu 1 311 0 328 222 0 37 chr12 128246841 128246922 -15539533 + L1MC4a LINE L1 5793 5870 -1938 21 0 0 0 chr12 128246928 128246949 -15539506 + AT_rich Low_complexity Low_complexity 1 21 0 1890 108 0 0 chr12 128247030 128247289 -15539166 - AluSg SINE Alu -18 292 34 1175 68 7 0 chr12 128248047 128248194 -15538261 + AluSp SINE Alu 1 148 -165 228 228 34 64 chr12 128248218 128248312 -15538143 - MIR SINE MIR -92 116 20 1884 112 66 3 chr12 128248399 128248685 -15537770 + AluSg SINE Alu 1 304 -6 2060 119 0 3 chr12 128248704 128248997 -15537458 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr12 128249185 128249213 -15537242 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 128249247 128249275 -15537180 + AT_rich Low_complexity Low_complexity 1 28 0 229 170 0 57 chr12 128249411 128249464 -15536991 - Alu SINE Alu -169 133 84 1375 120 5 14 chr12 128249464 128249681 -15536774 - AluJo SINE Alu -94 218 4 2019 110 20 0 chr12 128250032 128250324 -15536131 - AluSx SINE Alu -14 298 1 1980 93 45 7 chr12 128250578 128250868 -15535587 - AluSx SINE Alu -11 301 1 2241 90 7 7 chr12 128252031 128252331 -15534124 + AluSc SINE Alu 1 300 -9 1965 114 3 7 chr12 128252384 128252674 -15533781 + AluSx SINE Alu 21 309 -3 319 265 102 7 chr12 128252889 128253036 -15533419 - L1ME4a LINE L1 0 6121 5961 1977 120 17 10 chr12 128254285 128254586 -15531869 - AluSx SINE Alu -9 303 1 547 114 0 45 chr12 128254586 128254674 -15531781 - AluSg/x SINE Alu -19 293 210 243 190 152 76 chr12 128254734 128254768 -15531687 - MIR SINE MIR -51 211 181 2124 58 38 14 chr12 128254768 128255061 -15531394 + AluY SINE Alu 1 300 -11 243 190 152 76 chr12 128255061 128255105 -15531350 - MIR SINE MIR -81 181 127 1962 110 0 0 chr12 128256841 128257113 -15529342 + AluSx SINE Alu 1 272 -40 22 0 0 0 chr12 128257242 128257264 -15529191 + AT_rich Low_complexity Low_complexity 1 22 0 310 273 78 39 chr12 128257917 128258045 -15528410 + L1ME4a LINE L1 5968 6100 -21 2285 86 3 0 chr12 128258207 128258511 -15527944 + AluSx SINE Alu 1 305 -7 239 294 40 63 chr12 128258548 128258674 -15527781 - L1ME4a LINE L1 -387 5734 5612 1710 173 3 0 chr12 128258887 128259176 -15527279 - AluJb SINE Alu -16 296 7 388 238 73 20 chr12 128260682 128260833 -15525622 + L1ME4a LINE L1 5695 5853 -268 2081 99 0 0 chr12 128260891 128261221 -15525234 + AluSx SINE Alu 1 330 0 1465 184 46 21 chr12 128261301 128261584 -15524871 + AluJb SINE Alu 1 290 -22 1991 121 0 33 chr12 128261687 128261993 -15524462 + AluSx SINE Alu 1 296 -16 906 159 0 0 chr12 128261993 128262138 -15524317 + AluJo/FRAM SINE Alu 134 278 -34 239 263 162 30 chr12 128262703 128262802 -15523653 + MIR SINE MIR 35 146 -62 606 284 111 73 chr12 128264185 128264683 -15521772 + L2 LINE L2 2715 3270 -2 208 296 114 23 chr12 128265449 128265537 -15520918 - L2 LINE L2 -5 3267 3172 1012 103 0 42 chr12 128265537 128265702 -15520753 - AluSc SINE Alu -18 291 134 6571 177 22 7 chr12 128266152 128267441 -15519014 + L1P LINE L1 3276 4583 -1563 1934 94 11 0 chr12 128267693 128267960 -15518495 - AluSq SINE Alu -43 270 1 3961 194 44 5 chr12 128267960 128269004 -15517451 - L1P5 LINE L1 -668 5488 4396 662 176 0 0 chr12 128269512 128269631 -15516824 - L1MA9 LINE L1 -39 6273 6155 1252 180 54 80 chr12 128269671 128270021 -15516434 - L1MA9 LINE L1 -162 6150 5810 1808 127 4 0 chr12 128270665 128270933 -15515522 + AluSg SINE Alu 22 290 -20 276 298 131 0 chr12 128270946 128271030 -15515425 + MIR SINE MIR 147 241 -21 429 241 76 7 chr12 128271255 128271400 -15515055 - L1ME3A LINE L1 0 6170 6016 198 304 18 0 chr12 128271440 128271496 -15514959 - L2 LINE L2 -1 3271 3215 833 224 94 5 chr12 128271772 128271973 -15514482 + MIR SINE MIR 7 225 -37 288 333 0 0 chr12 128273179 128273248 -15513207 - L2 LINE L2 -40 3273 3205 1986 111 17 7 chr12 128273589 128273886 -15512569 - AluSx SINE Alu -12 300 1 299 214 41 92 chr12 128273911 128274009 -15512446 + MIR SINE MIR 90 182 -80 1996 142 0 13 chr12 128274361 128274677 -15511778 - AluSx SINE Alu 0 312 1 2344 76 0 3 chr12 128274680 128274984 -15511471 - AluY SINE Alu -8 303 1 465 294 70 7 chr12 128275009 128275152 -15511303 + LTR16C LTR ERVL 89 240 -251 1617 175 7 32 chr12 128275154 128275443 -15511012 + AluJo SINE Alu 1 283 -29 279 114 0 0 chr12 128275443 128275487 -15510968 + (CA)n Simple_repeat Simple_repeat 1 44 0 1617 175 7 32 chr12 128275487 128275505 -15510950 + AluJo SINE Alu 283 300 -12 2134 101 0 41 chr12 128275524 128275841 -15510614 - AluSx SINE Alu -8 304 1 183 80 0 0 chr12 128275867 128275892 -15510563 + (TA)n Simple_repeat Simple_repeat 1 25 0 686 211 0 0 chr12 128275908 128276022 -15510433 - FLAM_C SINE Alu -23 120 7 2030 85 65 10 chr12 128276034 128276328 -15510127 - AluSx SINE Alu -2 310 1 688 265 44 10 chr12 128276346 128276550 -15509905 + LTR16C LTR ERVL 254 464 -27 190 256 0 0 chr12 128276553 128276596 -15509859 - L2 LINE L2 -69 3203 3161 2102 113 7 0 chr12 128277349 128277650 -15508805 + AluSg SINE Alu 1 303 -7 297 0 0 0 chr12 128277728 128277761 -15508694 + (CA)n Simple_repeat Simple_repeat 1 33 0 2225 87 3 3 chr12 128278133 128278431 -15508024 - AluSp SINE Alu -15 298 1 314 250 16 0 chr12 128278669 128278733 -15507722 + MER58A DNA MER1_type 2 66 -41 2170 99 3 0 chr12 128278735 128279037 -15507418 + AluSg SINE Alu 1 303 -7 2311 65 3 0 chr12 128279048 128279362 -15507093 + AluY SINE Alu 1 315 0 1567 123 8 8 chr12 128279371 128279614 -15506841 + AluSq SINE Alu 6 248 -65 505 268 179 64 chr12 128279858 128280171 -15506284 + L2 LINE L2 2924 3272 0 255 256 26 13 chr12 128280171 128280249 -15506206 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 474 256 12 60 chr12 128280712 128280880 -15505575 - MIR SINE MIR -12 250 91 1681 110 40 30 chr12 128281061 128281361 -15505094 - AluSg SINE Alu -7 303 1 24 32 0 0 chr12 128281371 128281402 -15505053 + AT_rich Low_complexity Low_complexity 1 31 0 1904 120 40 10 chr12 128281408 128281707 -15504748 - AluSx SINE Alu -4 308 1 1921 118 52 0 chr12 128281712 128282001 -15504454 - AluSq SINE Alu -9 304 1 280 291 91 9 chr12 128282208 128282318 -15504137 + MIR SINE MIR 21 139 -123 546 268 39 0 chr12 128282372 128282525 -15503930 - MIR SINE MIR -15 247 89 836 195 19 0 chr12 128283816 128283970 -15502485 - FRAM SINE Alu -22 154 1 474 18 0 0 chr12 128283971 128284026 -15502429 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1986 120 0 0 chr12 128284026 128284310 -15502145 - AluSx SINE Alu -28 284 1 526 250 108 20 chr12 128284604 128284752 -15501703 + MIR SINE MIR 43 203 -59 436 193 18 0 chr12 128285144 128285253 -15501202 + CT-rich Low_complexity Low_complexity 4 114 0 359 235 39 39 chr12 128285265 128285367 -15501088 - LTR39 LTR ERV1 -306 477 376 358 154 15 15 chr12 128285342 128285407 -15501048 - MLT1C LTR MaLR -402 65 1 * 457 169 46 0 chr12 128285499 128285629 -15500826 + CT-rich Low_complexity Low_complexity 3 138 0 1720 218 52 59 chr12 128285676 128286216 -15500239 + MER49 LTR ERV1 1 543 -360 2399 55 0 10 chr12 128286216 128286525 -15499930 + AluY SINE Alu 1 306 -5 1720 218 52 59 chr12 128286525 128286662 -15499793 + MER49 LTR ERV1 543 679 -224 2011 132 0 0 chr12 128286662 128286958 -15499497 + AluSx SINE Alu 1 296 -16 1720 218 52 59 chr12 128286958 128287104 -15499351 + MER49 LTR ERV1 679 903 0 1129 265 54 32 chr12 128287222 128287592 -15498863 + L2 LINE L2 2927 3304 -9 1759 168 54 64 chr12 128287665 128288011 -15498444 + LTR52 LTR ERVL 1 349 -72 2695 146 49 6 chr12 128288011 128288477 -15497978 + MER66B LTR ERV1 1 486 0 1759 168 54 64 chr12 128288477 128288518 -15497937 + LTR52 LTR ERVL 349 386 -35 1672 152 53 42 chr12 128288518 128288879 -15497576 + MLT1A1 LTR MaLR 1 365 0 1759 168 54 64 chr12 128288879 128288913 -15497542 + LTR52 LTR ERVL 386 419 -2 2086 111 0 20 chr12 128289180 128289311 -15497144 + AluSg SINE Alu 1 133 -177 180 0 0 0 chr12 128289311 128289331 -15497124 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2086 111 0 20 chr12 128289331 128289505 -15496950 + AluSg SINE Alu 133 300 -10 23 0 0 0 chr12 128289875 128289898 -15496557 + AT_rich Low_complexity Low_complexity 1 23 0 235 171 43 14 chr12 128289900 128289970 -15496485 - HsTC2a DNA Tc2 -65 677 606 827 152 23 8 chr12 128289982 128290114 -15496341 + AluJo SINE Alu 2 135 -177 26 0 0 0 chr12 128290114 128290140 -15496315 + AT_rich Low_complexity Low_complexity 1 26 0 1344 247 123 56 chr12 128290140 128290448 -15496007 - HsTC2a DNA Tc2 -1280 620 334 1894 100 13 57 chr12 128290448 128290749 -15495706 - AluSx SINE Alu -24 288 1 1344 247 123 56 chr12 128290749 128291015 -15495440 - HsTC2a DNA Tc2 -1566 334 7 593 333 137 15 chr12 128291284 128291620 -15494835 + L2 LINE L2 2896 3272 0 468 286 59 78 chr12 128291900 128292155 -15494300 + L2 LINE L2 3022 3271 -1 312 197 92 26 chr12 128292681 128292757 -15493698 + L2 LINE L2 3227 3307 -6 358 240 115 0 chr12 128292763 128292859 -15493596 - MIR SINE MIR -129 133 27 639 192 18 0 chr12 128292965 128293132 -15493323 + CT-rich Low_complexity Low_complexity 1 170 0 2262 89 0 7 chr12 128293766 128294070 -15492385 - AluSg SINE Alu -8 302 1 470 273 97 7 chr12 128294219 128294373 -15492082 - MIR SINE MIR -69 193 26 331 233 0 0 chr12 128294541 128294601 -15491854 + MER5B DNA MER1_type 11 70 -108 4696 64 2 24 chr12 128294648 128295271 -15491184 - L1PB1 LINE L1 0 6151 5543 781 83 58 8 chr12 128295274 128295394 -15491061 + L1PB1 LINE L1 5386 5511 -640 267 224 0 17 chr12 128295398 128295456 -15490999 + MER5B DNA MER1_type 121 177 -1 398 154 39 13 chr12 128295616 128295694 -15490761 - L1MB5 LINE L1 -246 5928 5849 1075 160 39 10 chr12 128295695 128295901 -15490554 + L1MB5 LINE L1 5955 6166 -8 915 117 0 29 chr12 128295914 128296051 -15490404 + FLAM_C SINE Alu 1 133 0 445 299 181 0 chr12 128296812 128297033 -15489422 + MIR SINE MIR 1 261 -1 702 259 88 29 chr12 128297727 128298122 -15488333 + L2 LINE L2 2621 3033 -239 678 227 155 16 chr12 128298122 128298546 -15487909 - MLT1G1 LTR MaLR 0 595 1 417 329 80 51 chr12 128298546 128298783 -15487672 + L2 LINE L2 3029 3272 0 391 296 88 29 chr12 128298835 128299083 -15487372 - Charlie8 DNA MER1_type -1010 1407 74 198 71 0 0 chr12 128299086 128299114 -15487341 + (CA)n Simple_repeat Simple_repeat 1 28 0 293 68 23 0 chr12 128299114 128299158 -15487297 + (GA)n Simple_repeat Simple_repeat 1 45 0 1991 120 7 3 chr12 128299221 128299513 -15486942 + AluSx SINE Alu 1 293 -19 312 242 26 153 chr12 128299719 128299793 -15486662 + L2 LINE L2 3143 3225 -88 2330 76 7 0 chr12 128299793 128300094 -15486361 - AluY SINE Alu -8 303 1 312 242 26 153 chr12 128300094 128300209 -15486246 + L2 LINE L2 3225 3308 -5 1103 125 109 22 chr12 128300979 128301163 -15485292 - MER20 DNA MER1_type 0 219 20 456 19 0 0 chr12 128301182 128301235 -15485220 + (CA)n Simple_repeat Simple_repeat 1 53 0 515 299 62 45 chr12 128301324 128301568 -15484887 - MIR SINE MIR -10 252 5 1143 136 0 2 chr12 128301750 128302287 -15484168 + (CAT)n Simple_repeat Simple_repeat 1 536 0 274 310 11 11 chr12 128302694 128302781 -15483674 - MIR3 SINE MIR -41 167 81 2419 118 13 3 chr12 128302799 128303171 -15483284 - L1PB1 LINE L1 0 6151 5776 327 200 93 0 chr12 128303171 128303238 -15483217 + L1MC4 LINE L1 6613 6689 -1353 226 105 26 0 chr12 128303238 128303276 -15483179 + L1P5 LINE L1 5776 5814 -337 310 261 14 0 chr12 128303280 128303349 -15483106 - L1MCa LINE L1 -4362 2064 1995 601 86 0 0 chr12 128303368 128303449 -15483006 - L1P5 LINE L1 -360 5791 5711 222 37 0 0 chr12 128303514 128303541 -15482914 + (TTA)n Simple_repeat Simple_repeat 3 29 0 935 185 135 15 chr12 128303573 128303773 -15482682 - MER58A DNA MER1_type 0 224 1 644 299 48 59 chr12 128303840 128304194 -15482261 - MLT1H LTR MaLR -2 547 198 746 186 87 27 chr12 128304251 128304434 -15482021 - MLT1H LTR MaLR -353 196 3 1202 212 4 9 chr12 128305291 128305517 -15480938 + MIR SINE MIR 18 242 -20 1844 148 10 0 chr12 128305626 128305923 -15480532 + AluJb SINE Alu 4 303 -9 627 279 0 0 chr12 128306315 128306455 -15480000 - MIR SINE MIR -71 191 52 1690 181 20 64 chr12 128306588 128306996 -15479459 - MLT1B LTR MaLR 0 390 1 1288 181 0 4 chr12 128307444 128307670 -15478785 + AluJo SINE Alu 1 225 -87 21 0 0 0 chr12 128307708 128307729 -15478726 + AT_rich Low_complexity Low_complexity 1 21 0 396 244 96 51 chr12 128308330 128308486 -15477969 + MIR SINE MIR 19 181 -81 2132 110 0 3 chr12 128308487 128308786 -15477669 - AluSg SINE Alu -12 298 1 554 291 45 6 chr12 128308817 128308996 -15477459 + MIR SINE MIR 61 246 -16 1311 185 106 0 chr12 128309040 128309305 -15477150 - AluJb SINE Alu -19 293 1 541 296 62 0 chr12 128309669 128309848 -15476607 + MIR SINE MIR 53 242 -20 732 150 19 106 chr12 128310201 128310361 -15476094 - MER63A DNA MER1_type 0 210 65 284 279 6 17 chr12 128310430 128310557 -15475898 + T-rich Low_complexity Low_complexity 1 125 0 2289 83 0 0 chr12 128310995 128311285 -15475170 - AluSc SINE Alu -19 290 1 1460 153 0 60 chr12 128311748 128312048 -15474407 - AluJo SINE Alu -10 302 21 474 285 60 74 chr12 128312168 128312507 -15473948 - L1ME4a LINE L1 -94 6027 5694 2429 71 0 0 chr12 128312507 128312817 -15473638 - AluY SINE Alu -1 310 1 474 285 60 74 chr12 128312817 128312895 -15473560 - L1ME4a LINE L1 -427 5694 5616 1090 175 25 15 chr12 128313407 128313607 -15472848 + MER63A DNA MER1_type 9 210 0 725 278 73 21 chr12 128313812 128314046 -15472409 + MIR SINE MIR 13 258 -4 817 211 131 58 chr12 128314966 128315021 -15471434 - MER46C DNA MER2_type -3 335 285 221 0 35 0 chr12 128315021 128315050 -15471405 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 817 211 131 58 chr12 128315050 128315306 -15471149 - MER46C DNA MER2_type -53 285 1 2105 94 3 3 chr12 128315888 128316174 -15470281 + AluSp SINE Alu 1 286 -27 635 222 272 0 chr12 128316228 128316408 -15470047 - MIR SINE MIR -18 244 16 27 29 0 0 chr12 128316823 128316857 -15469598 + AT_rich Low_complexity Low_complexity 1 34 0 582 250 98 57 chr12 128316923 128317167 -15469288 - L2 LINE L2 -49 3264 3011 588 274 57 52 chr12 128317768 128318016 -15468439 - MIR SINE MIR -2 260 12 185 222 0 0 chr12 128318048 128318084 -15468371 - MIR SINE MIR -162 100 65 482 284 62 8 chr12 128318105 128318392 -15468063 - MLT1I LTR MaLR -19 390 72 2146 86 0 14 chr12 128319521 128319813 -15466642 - AluSq SINE Alu -12 301 14 233 269 30 0 chr12 128319919 128319986 -15466469 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1204 193 53 82 chr12 128320062 128320404 -15466051 + MER46C DNA MER2_type 2 333 -5 908 154 18 24 chr12 128320466 128320635 -15465820 - MER69A DNA AcHobo 0 177 10 324 262 131 0 chr12 128320635 128320757 -15465698 + MIR SINE MIR 97 234 -28 189 74 0 0 chr12 128321689 128321716 -15464739 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 1761 162 0 23 chr12 128321761 128322070 -15464385 + AluJo SINE Alu 1 302 -10 555 241 42 37 chr12 128322459 128322650 -15463805 - MIR SINE MIR -31 231 40 469 259 58 36 chr12 128323039 128323178 -15463277 + MIR3 SINE MIR 13 154 -54 593 239 80 12 chr12 128323319 128323482 -15462973 - Charlie8 DNA MER1_type -2141 276 103 279 292 56 11 chr12 128323890 128323979 -15462476 - MIR3 SINE MIR -28 180 88 1777 144 7 26 chr12 128324081 128324387 -15462068 + AluSx SINE Alu 6 305 -7 260 337 22 11 chr12 128325348 128325437 -15461018 + MIR SINE MIR 26 115 -147 282 355 60 6 chr12 128325826 128325992 -15460463 - MARNA DNA Mariner -328 258 84 203 204 19 0 chr12 128326175 128326229 -15460226 + CT-rich Low_complexity Low_complexity 4 58 0 24 0 0 0 chr12 128326739 128326763 -15459692 + AT_rich Low_complexity Low_complexity 1 24 0 2139 125 3 0 chr12 128326763 128327052 -15459403 + AluSx SINE Alu 1 290 -22 620 148 35 0 chr12 128327064 128327179 -15459276 - Charlie5 DNA MER1_type -142 2470 2352 1062 170 116 39 chr12 128327183 128327442 -15459013 - L1MB7 LINE L1 -10 6174 5896 1581 198 3 32 chr12 128327510 128327824 -15458631 + AluJb SINE Alu 1 305 -7 1137 128 0 0 chr12 128328620 128328800 -15457655 + (TA)n Simple_repeat Simple_repeat 1 180 0 915 142 0 0 chr12 128328804 128328931 -15457524 - FRAM SINE Alu -11 165 39 238 275 129 86 chr12 128328954 128329075 -15457380 - L2 LINE L2 -1 3312 3198 1876 181 0 10 chr12 128329075 128329385 -15457070 + AluJo SINE Alu 1 307 -5 2222 112 0 0 chr12 128329395 128329681 -15456774 + AluSc SINE Alu 6 291 -18 238 275 129 86 chr12 128329681 128329850 -15456605 - L2 LINE L2 -123 3190 2998 * 288 317 55 12 chr12 128329846 128330010 -15456445 - L2 LINE L2 -468 2846 2676 479 229 112 104 chr12 128330372 128330512 -15455943 + Charlie8 DNA MER1_type 26 170 -171 714 229 0 0 chr12 128330512 128330643 -15455812 + FLAM_C SINE Alu 1 131 -2 479 229 112 104 chr12 128330643 128330751 -15455704 + Charlie8 DNA MER1_type 170 276 -65 321 26 0 0 chr12 128330834 128330872 -15455583 + (ATG)n Simple_repeat Simple_repeat 2 39 0 662 242 108 11 chr12 128330913 128331099 -15455356 - MIR SINE MIR -55 207 4 338 364 12 12 chr12 128331225 128331398 -15455057 + L2 LINE L2 2580 2752 -562 406 261 0 42 chr12 128331538 128331657 -15454798 + L2 LINE L2 2949 3062 -210 1113 264 66 43 chr12 128331765 128332205 -15454250 - MLT1J LTR MaLR -33 478 29 261 359 92 0 chr12 128333523 128333654 -15452801 - L2 LINE L2 -7 3265 3123 902 263 106 20 chr12 128334490 128334808 -15451647 - MLT1C LTR MaLR -7 498 103 7219 129 33 34 chr12 128334808 128335357 -15451098 + Tigger3b DNA MER2_type 1 549 -2479 2103 131 0 37 chr12 128335357 128335678 -15450777 - AluSq SINE Alu -4 309 1 7219 129 33 34 chr12 128335678 128336354 -15450101 + Tigger3b DNA MER2_type 549 1225 -6 587 119 28 55 chr12 128336360 128336469 -15449986 - MLT1C LTR MaLR -361 106 1 1849 152 0 30 chr12 128336515 128336818 -15449637 - AluJb SINE Alu -18 294 1 373 245 162 14 chr12 128336834 128337027 -15449428 - Charlie8 DNA MER1_type -2141 276 84 243 362 29 35 chr12 128337166 128337283 -15449172 - L2 LINE L2 -433 2881 2764 1846 177 0 0 chr12 128337283 128337583 -15448872 - AluSx SINE Alu 0 312 13 243 362 29 35 chr12 128337583 128337639 -15448816 - L2 LINE L2 -550 2764 2709 748 272 35 0 chr12 128337966 128338168 -15448287 - MIR SINE MIR -8 254 46 1976 139 3 23 chr12 128338180 128338482 -15447973 - AluJo SINE Alu -15 297 2 188 324 14 54 chr12 128338699 128338773 -15447682 - L2 LINE L2 -254 3059 2989 191 348 29 0 chr12 128338903 128338972 -15447483 - L2 LINE L2 -528 2786 2716 316 211 202 29 chr12 128339473 128339577 -15446878 + MIR SINE MIR 23 144 -118 434 271 50 22 chr12 128339590 128339771 -15446684 + MIR SINE MIR 21 206 -56 196 314 10 29 chr12 128339790 128339892 -15446563 + MIR SINE MIR 151 250 -12 253 273 0 57 chr12 128340494 128340582 -15445873 + MER5A DNA MER1_type 37 119 -70 417 39 0 0 chr12 128340591 128340642 -15445813 + (TG)n Simple_repeat Simple_repeat 2 52 0 2150 125 7 0 chr12 128340657 128340952 -15445503 - AluSx SINE Alu -15 297 1 237 108 0 0 chr12 128341045 128341082 -15445373 + (TG)n Simple_repeat Simple_repeat 1 37 0 379 269 8 17 chr12 128341086 128341205 -15445250 + MER5A DNA MER1_type 63 180 -9 2170 118 3 0 chr12 128341729 128342017 -15444438 - AluSx SINE Alu -10 302 14 242 262 0 95 chr12 128342052 128342136 -15444319 - L2 LINE L2 -38 3234 3159 951 236 76 2 chr12 128342148 128342526 -15443929 - Charlie4a DNA MER1_type -2 506 24 376 290 27 65 chr12 128342656 128342842 -15443613 - L2 LINE L2 -243 3029 2851 496 348 25 5 chr12 128344399 128344600 -15441855 - MIR SINE MIR -32 230 26 738 320 34 27 chr12 128345024 128345436 -15441019 - L2 LINE L2 0 3313 2899 184 247 57 113 chr12 128345690 128345884 -15440571 - L2 LINE L2 -58 3214 3032 661 112 0 0 chr12 128345901 128345999 -15440456 - AluJ/FRAM SINE Alu -1 311 214 729 189 0 40 chr12 128346007 128346155 -15440300 - FLAM_C SINE Alu -1 142 1 674 262 45 5 chr12 128346189 128346391 -15440064 - MIR SINE MIR -11 251 42 2299 224 12 0 chr12 128346395 128346894 -15439561 + L1PA15-16 LINE L1 2243 2747 -4102 6573 79 9 7 chr12 128346896 128348618 -15437837 + L1PA14 LINE L1 4432 6158 -3 2470 46 30 16 chr12 128348833 128349160 -15437295 - AluY SINE Alu 0 332 2 325 283 44 18 chr12 128349423 128349536 -15436919 - MIR SINE MIR -21 241 126 554 289 43 30 chr12 128350396 128350631 -15435824 - MIR SINE MIR -3 259 22 336 288 46 26 chr12 128351197 128351350 -15435105 - L2 LINE L2 0 3313 3158 260 174 290 14 chr12 128352318 128352387 -15434068 - L2 LINE L2 -43 3270 3183 372 251 145 6 chr12 128352519 128352674 -15433781 + MER5A DNA MER1_type 4 183 -6 262 321 28 47 chr12 128352717 128352929 -15433526 - L2 LINE L2 -233 3039 2832 357 24 0 0 chr12 128353586 128353628 -15432827 + (TTA)n Simple_repeat Simple_repeat 3 44 0 39409 82 9 6 chr12 128353628 128359738 -15426717 - L1PA7 LINE L1 -18 6136 11 12363 84 10 0 chr12 128359747 128361334 -15425121 - L1P3 LINE L1 -4858 1603 1 271 380 0 0 chr12 128362295 128362424 -15424031 - MIR SINE MIR 0 262 134 318 167 0 0 chr12 128362470 128362530 -15423925 + (TGGG)n Simple_repeat Simple_repeat 1 60 0 963 106 11 6 chr12 128362530 128362709 -15423746 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 576 231 8 8 chr12 128363113 128363234 -15423221 - L2 LINE L2 0 3313 3193 1745 144 7 47 chr12 128363842 128363991 -15422464 + AluJo SINE Alu 1 134 -178 1784 96 4 4 chr12 128363991 128364230 -15422225 + AluSg/x SINE Alu 72 310 0 1745 144 7 47 chr12 128364230 128364379 -15422076 + AluJo SINE Alu 134 287 -25 364 289 116 54 chr12 128364613 128365332 -15421123 - L2 LINE L2 -174 3098 2306 206 211 0 0 chr12 128365411 128365449 -15421006 + GA-rich Low_complexity Low_complexity 4 41 0 2166 130 0 7 chr12 128365512 128365813 -15420642 + AluSx SINE Alu 1 299 -13 315 324 34 14 chr12 128365816 128365964 -15420491 - MIR SINE MIR -5 257 107 496 222 94 30 chr12 128366138 128366320 -15420135 - MIR SINE MIR -41 221 31 299 209 254 136 chr12 128366783 128366960 -15419495 - MER58C DNA MER1_type -15 200 3 541 305 17 23 chr12 128367308 128367485 -15418970 - MIR SINE MIR -10 252 77 417 287 63 29 chr12 128367922 128368096 -15418359 - MIR SINE MIR 0 262 83 324 227 10 41 chr12 128368520 128368617 -15417838 + L2 LINE L2 3159 3252 -61 1071 117 0 0 chr12 128368653 128368833 -15417622 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 452 248 266 27 chr12 128369291 128369513 -15416942 + MLT1L LTR MaLR 23 297 -318 2264 92 13 16 chr12 128369515 128369820 -15416635 + AluSx SINE Alu 1 304 -8 282 316 105 23 chr12 128370706 128370839 -15415616 + MIR SINE MIR 5 148 -114 2206 101 3 10 chr12 128370866 128371163 -15415292 + AluSx SINE Alu 1 295 -17 262 245 0 0 chr12 128371297 128371350 -15415105 - LTR67 LTR ERVL -3 554 502 204 219 0 0 chr12 128371568 128371609 -15414846 - L2 LINE L2 -221 3051 3011 * 232 250 73 0 chr12 128371607 128371675 -15414780 - MIR3 SINE MIR -50 158 86 1190 252 61 141 chr12 128371916 128372667 -15413788 + MER21B LTR ERV1 22 712 -151 1100 294 94 33 chr12 128372793 128373283 -15413172 + MLT1K LTR MaLR 69 588 0 657 269 103 28 chr12 128373624 128373877 -15412578 + Charlie7 DNA MER1_type 1 272 -2340 261 266 13 13 chr12 128374806 128374885 -15411570 + MIR3 SINE MIR 104 182 -26 217 366 0 0 chr12 128375223 128375324 -15411131 - L2 LINE L2 -300 2972 2872 442 240 10 18 chr12 128375483 128375609 -15410846 + MER33 DNA MER1_type 1 96 -99 * 5462 138 13 50 chr12 128375598 128376398 -15410057 + MER49 LTR ERV1 5 766 -157 2520 75 3 0 chr12 128376398 128376706 -15409749 + AluY SINE Alu 1 309 -2 5462 138 13 50 chr12 128376706 128376852 -15409603 + MER49 LTR ERV1 766 916 -7 1302 134 29 4 chr12 128376856 128377094 -15409361 + MER33 DNA MER1_type 81 324 0 2945 94 12 17 chr12 128377231 128377645 -15408810 + L1PA13 LINE L1 5752 6163 0 180 0 0 0 chr12 128377945 128377965 -15408490 + (TG)n Simple_repeat Simple_repeat 2 21 0 861 245 11 82 chr12 128378031 128378226 -15408229 + MIR SINE MIR 12 184 -78 537 208 126 25 chr12 128378226 128378385 -15408070 - MER5B DNA MER1_type -3 175 1 861 245 11 82 chr12 128378385 128378458 -15407997 + MIR SINE MIR 184 261 -1 450 262 124 0 chr12 128379125 128379270 -15407185 - MIR SINE MIR 0 262 100 346 250 60 73 chr12 128379270 128379608 -15406847 - MLT1K LTR MaLR -18 570 201 233 182 0 0 chr12 128379934 128379978 -15406477 + L2 LINE L2 3268 3311 -2 193 336 29 43 chr12 128380134 128380274 -15406181 - L2 LINE L2 -216 3056 2919 3916 186 21 33 chr12 128380296 128381119 -15405336 - L1MB4 LINE L1 0 6180 5368 289 338 7 58 chr12 128381245 128381384 -15405071 - L2 LINE L2 -650 2664 2533 306 288 98 11 chr12 128381392 128381576 -15404879 + L1MC4a LINE L1 5721 5920 -1888 402 238 195 0 chr12 128381724 128381888 -15404567 + L2 LINE L2 3113 3308 -5 1954 158 0 7 chr12 128382626 128382929 -15403526 - AluJo SINE Alu -11 301 1 219 225 36 27 chr12 128382955 128383066 -15403389 + (TA)n Simple_repeat Simple_repeat 1 112 0 2004 139 10 3 chr12 128383322 128383623 -15402832 - AluSx SINE Alu -9 303 1 2300 95 3 3 chr12 128384255 128384560 -15401895 + AluSg SINE Alu 1 305 -5 1577 219 63 0 chr12 128384662 128384977 -15401478 - MER58B DNA MER1_type -6 335 1 23 0 0 0 chr12 128385002 128385025 -15401430 + AT_rich Low_complexity Low_complexity 1 23 0 2263 99 3 0 chr12 128385025 128385342 -15401113 + AluSx SINE Alu 1 312 0 1707 177 0 7 chr12 128385440 128385711 -15400744 - AluJo SINE Alu -43 269 1 2229 108 0 13 chr12 128385941 128386077 -15400378 + AluSx SINE Alu 1 137 -175 2595 37 0 3 chr12 128386077 128386373 -15400082 + AluY SINE Alu 1 295 -16 2229 108 0 13 chr12 128386373 128386543 -15399912 + AluSx SINE Alu 137 303 -9 2227 109 3 3 chr12 128387041 128387344 -15399111 - AluSp SINE Alu -10 303 1 1069 203 68 5 chr12 128387571 128387848 -15398607 + L1M3 LINE L1 5431 5758 -406 357 243 9 45 chr12 128387868 128387979 -15398476 - MLT1K LTR MaLR -36 552 446 1764 261 85 103 chr12 128388017 128388556 -15397899 + L1M4 LINE L1 2610 3157 -2989 2020 124 0 10 chr12 128388556 128388847 -15397608 + AluSq SINE Alu 1 288 -25 1764 261 85 103 chr12 128388847 128390207 -15396248 + L1M4 LINE L1 3157 4540 -1606 1563 99 218 8 chr12 128390207 128390459 -15395996 + AluSg1 SINE Alu 1 305 -4 1764 261 85 103 chr12 128390459 128391012 -15395443 + L1M4 LINE L1 4540 5018 -1128 2223 117 17 0 chr12 128391012 128391310 -15395145 + AluSx SINE Alu 1 303 -9 1764 261 85 103 chr12 128391310 128391384 -15395071 + L1M4 LINE L1 5018 5092 -1054 2000 143 76 28 chr12 128391807 128392163 -15394292 - THE1C LTR MaLR 0 375 3 2075 203 93 94 chr12 128392320 128392472 -15393983 - MER63D DNA MER1_type 0 1061 910 1728 181 27 0 chr12 128392472 128392787 -15393668 + AluSx SINE Alu 1 312 0 2075 203 93 94 chr12 128392787 128393648 -15392807 - MER63D DNA MER1_type -151 910 49 31 0 0 0 chr12 128393668 128393699 -15392756 + AT_rich Low_complexity Low_complexity 1 31 0 602 144 40 8 chr12 128393711 128393836 -15392619 + L1MDa LINE L1 2340 2468 -4072 2172 84 11 0 chr12 128393836 128394109 -15392346 + AluSq SINE Alu 1 276 -37 234 133 17 33 chr12 128394110 128394170 -15392285 + GA-rich Low_complexity Low_complexity 1 59 0 231 213 0 32 chr12 128394170 128394264 -15392191 + L1MDa LINE L1 2441 2531 -4009 871 169 7 0 chr12 128394264 128394406 -15392049 - MLT1B LTR MaLR -246 144 2 318 50 0 0 chr12 128394431 128394471 -15391984 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2475 61 0 0 chr12 128395040 128395333 -15391122 + AluY SINE Alu 1 293 -18 691 319 107 28 chr12 128395476 128395620 -15390835 - L2 LINE L2 -2 3311 3180 422 73 0 15 chr12 128395620 128395688 -15390767 + (ATG)n Simple_repeat Simple_repeat 2 68 0 691 319 107 28 chr12 128395688 128395935 -15390520 - L2 LINE L2 -133 3180 2889 773 269 28 14 chr12 128396235 128396447 -15390008 - MIR SINE MIR -3 259 45 180 195 0 24 chr12 128396698 128396739 -15389716 - MER5B DNA MER1_type -124 54 15 241 197 164 16 chr12 128397972 128398033 -15388422 + MER5A DNA MER1_type 2 71 -118 1303 165 9 5 chr12 128398047 128398265 -15388190 + MER20 DNA MER1_type 1 219 0 285 290 0 0 chr12 128398417 128398486 -15387969 + MIR SINE MIR 81 149 -59 943 258 92 5 chr12 128398559 128398950 -15387505 + MER113 DNA MER1_type? 2 516 -5 397 316 65 7 chr12 128398955 128399094 -15387361 + MIR SINE MIR 9 155 -107 1638 209 89 84 chr12 128399095 128399660 -15386795 + MLT1F1 LTR MaLR 9 564 -3 474 298 77 75 chr12 128399787 128399899 -15386556 + HAL1 LINE L1 825 935 -1572 1865 166 7 0 chr12 128399899 128400188 -15386267 - AluJb SINE Alu -21 291 1 474 298 77 75 chr12 128400188 128400247 -15386208 + HAL1 LINE L1 935 992 -1515 2310 91 0 28 chr12 128400247 128400566 -15385889 - AluY SINE Alu -1 310 1 474 298 77 75 chr12 128400566 128400863 -15385592 + HAL1 LINE L1 992 1295 -1212 327 232 211 14 chr12 128401266 128401507 -15384948 + L1ME3 LINE L1 4217 4504 -1642 1420 81 23 77 chr12 128401637 128401858 -15384597 + L1PA11 LINE L1 5964 6172 -2 557 90 26 0 chr12 128401984 128402062 -15384393 - MADE1 DNA Mariner 0 80 1 703 310 87 32 chr12 128402079 128402353 -15384102 + L1ME3 LINE L1 4944 5202 -960 324 91 15 30 chr12 128402353 128402419 -15384036 + L1PA8 LINE L1 6108 6172 0 703 310 87 32 chr12 128402419 128403018 -15383437 + L1ME3 LINE L1 5202 5874 -288 2372 116 39 30 chr12 128403617 128403978 -15382477 + THE1B LTR MaLR 1 364 0 279 217 29 0 chr12 128404193 128404262 -15382193 + HAL1b LINE L1 755 825 -523 334 318 71 39 chr12 128404845 128404999 -15381456 + L2 LINE L2 2909 3067 -246 353 260 60 0 chr12 128405030 128405130 -15381325 - L2 LINE L2 -6 3307 3202 300 267 0 79 chr12 128405211 128405312 -15381143 + L2 LINE L2 3147 3239 -33 706 191 52 0 chr12 128405680 128405795 -15380660 + FLAM_A SINE Alu 3 123 -10 21 36 0 0 chr12 128405796 128405824 -15380631 + AT_rich Low_complexity Low_complexity 1 28 0 557 302 155 11 chr12 128405832 128406102 -15380353 + L2 LINE L2 2750 3051 -262 811 253 124 24 chr12 128406115 128406494 -15379961 - LTR33 LTR ERVL -15 506 90 919 163 163 0 chr12 128406498 128406658 -15379797 - MER58A DNA MER1_type -2 222 37 2363 86 0 20 chr12 128406807 128407108 -15379347 - AluSg SINE Alu -15 295 1 268 329 0 49 chr12 128407150 128407232 -15379223 + L2 LINE L2 3163 3240 -32 2222 80 35 3 chr12 128407241 128407527 -15378928 - AluSg SINE Alu -15 295 1 459 0 0 0 chr12 128407990 128408041 -15378414 + (TG)n Simple_repeat Simple_repeat 2 52 0 1833 153 0 11 chr12 128408041 128408322 -15378133 - AluJb SINE Alu -34 278 1 2164 111 37 0 chr12 128408892 128409190 -15377265 + AluSq SINE Alu 1 309 -4 267 31 0 0 chr12 128409190 128409222 -15377233 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 222 118 0 0 chr12 128409258 128409292 -15377163 + (T)n Simple_repeat Simple_repeat 1 34 0 200 35 35 0 chr12 128409531 128409560 -15376895 + (TC)n Simple_repeat Simple_repeat 1 30 0 478 219 233 19 chr12 128410107 128410322 -15376133 + L1ME4a LINE L1 5860 6120 -1 443 299 28 45 chr12 128410802 128410979 -15375476 + MIR SINE MIR 48 221 -41 28 29 0 0 chr12 128411229 128411264 -15375191 + AT_rich Low_complexity Low_complexity 1 35 0 1188 285 67 25 chr12 128411473 128411918 -15374537 - L2 LINE L2 0 3313 2850 900 157 14 0 chr12 128411919 128412095 -15374360 + FRAM SINE Alu 2 179 0 215 322 55 34 chr12 128412101 128412247 -15374208 - L2 LINE L2 -862 2452 2304 205 250 0 19 chr12 128412299 128412351 -15374104 + MER5A DNA MER1_type 30 80 -109 2441 76 0 3 chr12 128412370 128412671 -15373784 + AluY SINE Alu 1 300 -11 227 361 21 10 chr12 128412673 128412770 -15373685 - MER5A DNA MER1_type -55 134 37 554 278 139 49 chr12 128412772 128413054 -15373401 - L2 LINE L2 -4 3309 2989 2134 93 0 0 chr12 128413054 128413324 -15373131 + AluSg1 SINE Alu 29 298 -11 554 278 139 49 chr12 128413324 128413387 -15373068 - L2 LINE L2 -324 2989 2933 427 264 83 0 chr12 128413498 128413619 -15372836 - L2 LINE L2 -5 3267 3137 402 302 126 0 chr12 128413888 128414047 -15372408 - MIR SINE MIR 0 262 84 242 259 0 0 chr12 128414793 128414847 -15371608 + CT-rich Low_complexity Low_complexity 4 57 0 696 251 49 15 chr12 128416679 128416882 -15369573 + MIR SINE MIR 20 229 -33 846 266 54 34 chr12 128416894 128417191 -15369264 + L2 LINE L2 3011 3313 0 2281 102 0 3 chr12 128417677 128417982 -15368473 - AluSx SINE Alu -8 304 1 250 327 33 67 chr12 128417991 128418141 -15368314 + MIR SINE MIR 107 251 -11 263 262 123 0 chr12 128418427 128418549 -15367906 + MER20B DNA MER1_type 49 185 -598 591 264 23 0 chr12 128419064 128419193 -15367262 - MER91A DNA MER1_type -2 194 63 352 291 16 55 chr12 128419294 128419421 -15367034 - L2 LINE L2 -6 3266 3145 356 250 61 27 chr12 128419697 128419845 -15366610 - MER20B DNA MER1_type -623 160 8 394 357 66 14 chr12 128419898 128420111 -15366344 + MIR SINE MIR 32 255 -7 2965 256 86 95 chr12 128420322 128420387 -15366068 + HAL1 LINE L1 1 65 -2442 1752 77 17 9 chr12 128420387 128420620 -15365835 + L1MA1 LINE L1 6059 6293 -9 2965 256 86 95 chr12 128420620 128421708 -15364747 + HAL1 LINE L1 65 1161 -1346 3127 128 4 0 chr12 128421708 128422163 -15364292 + L1MB3 LINE L1 5725 6181 -2 2965 256 86 95 chr12 128422163 128422564 -15363891 + HAL1 LINE L1 1161 1540 -967 2567 46 0 7 chr12 128422564 128422867 -15363588 + AluY SINE Alu 1 301 -10 2965 256 86 95 chr12 128422867 128423113 -15363342 + HAL1 LINE L1 1540 1787 -720 386 262 14 28 chr12 128424018 128424159 -15362296 + L1MC5 LINE L1 7793 7931 -30 1668 168 3 52 chr12 128424162 128424490 -15361965 + AluSx SINE Alu 1 312 0 307 329 169 30 chr12 128424751 128424988 -15361467 + L2 LINE L2 2989 3258 -14 234 62 0 0 chr12 128424988 128425020 -15361435 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 321 308 17 8 chr12 128425479 128425599 -15360856 + MER103 DNA DNA 26 146 -20 1722 181 13 3 chr12 128425813 128426122 -15360333 - AluJo SINE Alu 0 312 1 192 242 145 0 chr12 128426460 128426522 -15359933 - MIR3 SINE MIR -31 177 107 1968 144 10 13 chr12 128426605 128426918 -15359537 - AluJb SINE Alu 0 312 1 243 61 0 0 chr12 128427496 128427529 -15358926 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 220 232 159 0 chr12 128427941 128428010 -15358445 + MIR SINE MIR 183 262 0 274 270 25 80 chr12 128428047 128428247 -15358208 + L1ME4a LINE L1 5754 5942 -179 549 281 27 7 chr12 128428381 128428527 -15357928 + MIR SINE MIR 21 169 -93 274 215 0 15 chr12 128428563 128428628 -15357827 + MIR SINE MIR 149 212 -50 1464 137 108 54 chr12 128428793 128429071 -15357384 - AluJb SINE Alu -15 297 5 272 215 77 0 chr12 128430010 128430075 -15356380 - L2 LINE L2 0 3272 3203 233 171 24 0 chr12 128430087 128430128 -15356327 + THE1C LTR MaLR 332 373 -2 10309 108 50 9 chr12 128430130 128431648 -15354807 + THE1C-int LTR MaLR 1 1580 0 2180 125 53 14 chr12 128431648 128432009 -15354446 + THE1C LTR MaLR 1 375 0 3882 173 28 11 chr12 128432009 128432818 -15353637 - L1MB7 LINE L1 -160 6024 5200 225 292 241 7 chr12 128432987 128433124 -15353331 + MIR SINE MIR 29 197 -65 240 191 0 106 chr12 128433131 128433184 -15353271 - MIR SINE MIR -53 209 169 2172 121 0 0 chr12 128433184 128433482 -15352973 - AluY SINE Alu -13 298 1 240 191 0 106 chr12 128433482 128433522 -15352933 - MIR SINE MIR -93 169 126 1902 147 29 13 chr12 128433522 128433656 -15352799 + AluJb SINE Alu 1 131 -181 2415 69 3 13 chr12 128433656 128433960 -15352495 + AluY SINE Alu 1 301 -10 1902 147 29 13 chr12 128433960 128434132 -15352323 + AluJb SINE Alu 131 312 0 1294 51 0 0 chr12 128434150 128434308 -15352147 - L1PA6 LINE L1 0 6154 5997 324 314 73 8 chr12 128434468 128434592 -15351863 - L2 LINE L2 -5 3267 3136 1836 151 42 3 chr12 128434721 128435005 -15351450 + AluJo SINE Alu 1 295 -17 1799 120 3 45 chr12 128435327 128435601 -15350854 + AluSx SINE Alu 20 283 -29 225 0 0 0 chr12 128435601 128435626 -15350829 + (GA)n Simple_repeat Simple_repeat 1 25 0 1799 120 3 45 chr12 128435626 128435642 -15350813 + AluSx SINE Alu 283 298 -14 500 230 33 20 chr12 128435917 128436069 -15350386 + MIR SINE MIR 109 262 0 265 351 111 22 chr12 128436141 128436511 -15349944 + L2 LINE L2 2817 3219 -94 774 214 11 50 chr12 128436588 128436770 -15349685 - MER5B DNA MER1_type 0 178 4 340 226 77 83 chr12 128437745 128437854 -15348601 + L1MD2 LINE L1 5999 6107 -252 2700 100 5 18 chr12 128437854 128438234 -15348221 + THE1C LTR MaLR 1 375 0 10096 105 42 45 chr12 128438234 128438741 -15347714 + THE1C-int LTR MaLR 1 508 -1072 2271 121 3 0 chr12 128438741 128439048 -15347407 + AluSp SINE Alu 1 308 -5 10096 105 42 45 chr12 128439048 128440124 -15346331 + THE1C-int LTR MaLR 508 1580 0 2673 106 5 16 chr12 128440124 128440503 -15345952 + THE1C LTR MaLR 1 375 0 340 226 77 83 chr12 128440503 128440548 -15345907 + L1MD2 LINE L1 6105 6156 -203 1894 174 0 0 chr12 128440548 128440846 -15345609 + AluJb SINE Alu 1 298 -14 340 226 77 83 chr12 128440846 128440869 -15345586 + L1MD2 LINE L1 6156 6178 -181 28 61 0 0 chr12 128440882 128440931 -15345524 + AT_rich Low_complexity Low_complexity 1 49 0 787 137 29 0 chr12 128440945 128441084 -15345371 + Charlie5 DNA MER1_type 2443 2585 -27 227 189 0 0 chr12 128441216 128441269 -15345186 - L2 LINE L2 0 3313 3261 256 232 37 37 chr12 128441276 128441358 -15345097 - L2 LINE L2 -224 3089 3008 789 296 74 10 chr12 128441359 128441768 -15344687 + L1P3 LINE L1 5379 5826 -346 2040 133 0 32 chr12 128442065 128442234 -15344221 - AluJo SINE Alu -7 305 149 1911 143 34 3 chr12 128442234 128442527 -15343928 - AluJo SINE Alu -9 303 2 2040 133 0 32 chr12 128442527 128442672 -15343783 - AluJo SINE Alu -163 149 1 688 235 30 21 chr12 128442750 128442945 -15343510 + MIR SINE MIR 66 262 0 251 284 0 0 chr12 128443422 128443489 -15342966 + L1ME4a LINE L1 5965 6031 -90 1021 163 0 65 chr12 128444643 128444827 -15341628 + AluJo SINE Alu 29 200 -112 486 304 131 14 chr12 128444923 128445137 -15341318 - MIR SINE MIR -3 259 21 1931 154 0 33 chr12 128445257 128445562 -15340893 + AluJb SINE Alu 1 295 -17 2097 158 26 68 chr12 128445586 128446054 -15340401 + L1MB3 LINE L1 5735 6182 -1 311 274 0 20 chr12 128446083 128446185 -15340270 + MER5B DNA MER1_type 74 173 -5 1076 151 0 0 chr12 128446551 128446710 -15339745 - FRAM SINE Alu -4 172 14 720 271 103 46 chr12 128446823 128447348 -15339107 - L1MC4 LINE L1 0 8042 7488 2078 141 10 0 chr12 128447379 128447685 -15338770 + AluSq SINE Alu 1 309 -4 554 103 11 0 chr12 128447701 128447788 -15338667 + (GAGAA)n Simple_repeat Simple_repeat 3 90 0 246 308 0 0 chr12 128447797 128447862 -15338593 - L1MD3 LINE L1 -434 7561 7497 264 268 0 14 chr12 128448034 128448105 -15338350 - L2 LINE L2 0 3313 3244 199 217 50 0 chr12 128448340 128448400 -15338055 - L2 LINE L2 -62 3251 3189 568 164 0 117 chr12 128448400 128448528 -15337927 - MER58A DNA MER1_type 0 224 112 2102 197 47 2 chr12 128448528 128448929 -15337526 - MSTB LTR MaLR 0 426 8 2128 140 6 148 chr12 128448936 128449340 -15337115 + MER66A LTR ERV1 27 487 9 2425 90 0 7 chr12 128449340 128449650 -15336805 - AluSq SINE Alu -5 308 1 2128 140 6 148 chr12 128449650 128449682 -15336773 + MER66A LTR ERV1 487 379 -99 2577 65 0 3 chr12 128449682 128449989 -15336466 - AluY SINE Alu -5 306 1 2128 140 6 148 chr12 128449989 128450078 -15336377 + MER66A LTR ERV1 378 478 0 676 202 9 0 chr12 128450088 128450202 -15336253 - MER58A DNA MER1_type 0 117 3 460 299 78 45 chr12 128450238 128450317 -15336138 - L2 LINE L2 -5 3267 3192 2391 108 0 0 chr12 128450317 128450622 -15335833 + AluSx SINE Alu 1 305 -7 460 299 78 45 chr12 128450622 128450786 -15335669 - L2 LINE L2 -80 3192 3016 247 139 116 0 chr12 128451122 128451165 -15335290 - MLT1I LTR MaLR -3 406 359 258 290 0 0 chr12 128451247 128451309 -15335146 - MER58 DNA MER1_type 0 2420 2359 243 175 0 0 chr12 128451335 128451375 -15335080 - MER58 DNA MER1_type -2152 268 229 472 114 14 0 chr12 128451375 128451445 -15335010 - MSTA LTR MaLR 0 428 358 228 188 16 62 chr12 128451502 128451566 -15334889 - MLT1J1 LTR MaLR -120 326 266 1248 153 49 54 chr12 128451585 128451808 -15334647 - MER58A DNA MER1_type 0 224 3 361 297 97 32 chr12 128451810 128451965 -15334490 - MLT1I LTR MaLR -174 235 71 268 196 72 62 chr12 128452462 128452559 -15333896 - 7SK RNA RNA -73 120 23 706 267 17 11 chr12 128452861 128453037 -15333418 + MIR SINE MIR 14 190 -72 1015 199 0 18 chr12 128453345 128453566 -15332889 - MIR SINE MIR -31 231 15 700 243 80 64 chr12 128453723 128453974 -15332481 - MER102a DNA MER1_type -1 329 75 342 238 96 19 chr12 128454329 128454457 -15331998 + MIR SINE MIR 50 181 -27 1744 160 10 34 chr12 128454487 128454781 -15331674 + AluJo SINE Alu 1 287 -25 189 147 0 0 chr12 128454844 128454878 -15331577 + (GA)n Simple_repeat Simple_repeat 2 35 0 328 294 24 40 chr12 128455024 128455150 -15331305 - MER5A DNA MER1_type -5 184 61 1844 159 13 16 chr12 128455519 128455828 -15330627 + AluJo SINE Alu 1 308 -4 209 360 0 12 chr12 128456421 128456507 -15329948 + MER5A DNA MER1_type 4 88 -101 * 213 321 0 0 chr12 128456457 128456513 -15329942 - MER5A DNA MER1_type -27 162 107 3872 219 48 12 chr12 128456665 128457477 -15328978 - MER21B LTR ERV1 -4 859 19 296 282 47 0 chr12 128457474 128457559 -15328896 - MER21B LTR ERV1 -756 107 19 * 738 164 0 15 chr12 128457673 128457807 -15328648 - FLAM_A SINE Alu -1 132 1 1014 234 98 49 chr12 128458958 128459303 -15327152 + L1ME LINE L1 5324 5668 -453 686 206 21 113 chr12 128459303 128459368 -15327087 + MER5B DNA MER1_type 1 70 -108 1764 164 0 16 chr12 128459368 128459672 -15326783 + AluJo SINE Alu 2 300 -12 686 206 21 113 chr12 128459672 128459800 -15326655 + MER5B DNA MER1_type 70 176 -2 1014 234 98 49 chr12 128459800 128459939 -15326516 + L1ME LINE L1 5668 5799 -322 839 127 0 0 chr12 128459944 128460062 -15326393 + FLAM_C SINE Alu 1 118 -15 647 235 37 60 chr12 128460093 128460374 -15326081 + L2 LINE L2 2782 3052 -261 2455 81 0 16 chr12 128460525 128460835 -15325620 + AluY SINE Alu 1 305 -6 698 232 92 0 chr12 128460850 128461057 -15325398 + MIR SINE MIR 37 262 0 213 275 113 25 chr12 128461042 128461122 -15325333 + L2 LINE L2 3226 3312 -1 * 2490 74 0 6 chr12 128461333 128461645 -15324810 - AluY SINE Alu -1 310 1 1340 225 128 14 chr12 128462869 128463300 -15323155 - MER113 DNA MER1_type? 0 521 42 2183 118 26 3 chr12 128463362 128463667 -15322788 + AluSx SINE Alu 1 312 0 524 165 0 83 chr12 128463764 128463897 -15322558 + MIR SINE MIR 69 190 -72 2441 68 0 0 chr12 128464676 128464971 -15321484 + AluY SINE Alu 1 295 -16 283 265 76 45 chr12 128465014 128465146 -15321309 - MLT1K LTR MaLR -47 541 406 699 293 11 11 chr12 128465376 128465564 -15320891 - MLT1K LTR MaLR -388 200 13 2499 84 3 3 chr12 128465657 128465968 -15320487 - AluSx SINE Alu -1 311 1 2226 110 0 3 chr12 128467251 128467543 -15318912 - AluSx SINE Alu -16 296 6 1362 210 20 73 chr12 128467573 128468113 -15318342 - MLT1D LTR MaLR -18 487 1 206 242 65 0 chr12 128468146 128468208 -15318247 + L2 LINE L2 2677 2742 -572 802 149 0 30 chr12 128468251 128468385 -15318070 - FLAM_C SINE Alu -3 130 1 2124 56 0 15 chr12 128468797 128469067 -15317388 - L1PA8 LINE L1 -5 6167 5902 1115 279 66 40 chr12 128469067 128469600 -15316855 + L2 LINE L2 2770 3312 -1 532 292 22 7 chr12 128469808 128469945 -15316510 + L2 LINE L2 3134 3272 0 2324 109 0 0 chr12 128470205 128470516 -15315939 + AluSq SINE Alu 1 311 -2 189 0 0 0 chr12 128471044 128471065 -15315390 + (A)n Simple_repeat Simple_repeat 1 21 0 2518 57 0 0 chr12 128471066 128471363 -15315092 + AluY SINE Alu 1 297 -14 524 279 149 5 chr12 128471373 128471595 -15314860 - MIR SINE MIR -1 261 8 2026 135 0 0 chr12 128471818 128472132 -15314323 - AluSx SINE Alu 0 314 1 395 303 111 48 chr12 128472276 128472629 -15313826 - MLT1K LTR MaLR -8 580 206 2260 104 0 32 chr12 128472726 128473042 -15313413 + AluSc SINE Alu 1 306 -3 534 286 81 63 chr12 128473101 128473517 -15312938 + L1MC/D LINE L1 5348 5770 -535 * 605 283 107 72 chr12 128473513 128474025 -15312430 + L1ME LINE L1 2 531 -5539 1307 269 60 90 chr12 128474187 128474301 -15312154 + L1ME LINE L1 572 688 -5573 2262 106 3 0 chr12 128474301 128474602 -15311853 + AluY SINE Alu 1 302 -9 1307 269 60 90 chr12 128474602 128475635 -15310820 + L1ME LINE L1 688 1685 -4576 1246 189 14 40 chr12 128475650 128475830 -15310625 + L1MB3 LINE L1 4594 4766 -1380 1477 184 96 0 chr12 128475830 128476112 -15310343 + AluJo SINE Alu 1 309 -3 1246 189 14 40 chr12 128476112 128476206 -15310249 + L1MB3 LINE L1 4766 4861 -1285 2722 26 16 0 chr12 128476222 128476535 -15309920 - AluYb8 SINE Alu 0 318 1 225 128 43 0 chr12 128476537 128476584 -15309871 - Alu SINE Alu -4 129 81 844 192 71 25 chr12 128476584 128476673 -15309782 - AluJo SINE Alu -97 215 131 224 30 30 0 chr12 128476673 128476706 -15309749 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 844 192 71 25 chr12 128476706 128476814 -15309641 - AluJo SINE Alu -181 131 9 1988 132 14 3 chr12 128476831 128477127 -15309328 - AluJo SINE Alu -13 299 1 1128 184 5 0 chr12 128477127 128477333 -15309122 + L1MB3 LINE L1 4847 5053 -1093 3822 145 31 0 chr12 128477333 128477974 -15308481 + L1MB3 LINE L1 5504 6164 -19 1434 204 53 13 chr12 128477975 128478279 -15308176 + MER74B LTR ERVL 58 373 -249 589 147 11 0 chr12 128478276 128478371 -15308084 + MER74B LTR ERVL 278 373 -249 * 486 141 0 124 chr12 128478353 128478474 -15307981 + MER74A LTR ERVL 210 315 -243 * 1438 233 11 45 chr12 128478471 128478723 -15307732 + MER74B LTR ERVL 278 516 -106 2452 123 11 5 chr12 128478723 128479096 -15307359 - THE1C LTR MaLR 0 375 1 1438 233 11 45 chr12 128479096 128479200 -15307255 + MER74B LTR ERVL 516 622 0 3672 127 15 2 chr12 128479260 128479780 -15306675 + MER1A DNA MER1_type 1 527 0 1028 278 8 0 chr12 128479805 128480050 -15306405 + MIR SINE MIR 3 249 -13 996 163 6 12 chr12 128480097 128480263 -15306192 + FAM SINE Alu 1 165 -10 36 23 0 0 chr12 128480263 128480306 -15306149 + AT_rich Low_complexity Low_complexity 1 43 0 601 135 0 87 chr12 128480900 128481026 -15305429 - FLAM_C SINE Alu 0 143 29 723 266 75 18 chr12 128481189 128481415 -15305040 + MIR SINE MIR 10 248 -14 520 308 43 66 chr12 128481418 128481720 -15304735 + L2 LINE L2 2978 3272 0 2202 147 53 68 chr12 128481946 128482345 -15304110 - L1MB5 LINE L1 -9 6165 5773 1763 154 0 7 chr12 128482345 128482637 -15303818 - AluSx SINE Alu -17 295 6 2202 147 53 68 chr12 128482637 128482706 -15303749 - L1MB5 LINE L1 -401 5773 5704 585 310 120 39 chr12 128482880 128483073 -15303382 - LTR16C LTR ERVL -37 454 278 1948 231 40 67 chr12 128483073 128483700 -15302755 + LTR9 LTR ERV1 3 612 0 585 310 120 39 chr12 128483700 128483864 -15302591 - LTR16C LTR ERVL -213 278 68 2277 84 0 0 chr12 128484131 128484428 -15302027 + AluSq SINE Alu 2 298 -15 186 355 32 0 chr12 128484446 128484508 -15301947 + MIR SINE MIR 64 127 -81 251 308 30 23 chr12 128484542 128484675 -15301780 - L1ME3A LINE L1 -10 6160 6027 1466 198 22 99 chr12 128484952 128485054 -15301401 - MLT1A2 LTR MaLR 0 374 266 1925 153 113 40 chr12 128485054 128485453 -15301002 + MSTA LTR MaLR 1 428 0 1466 198 22 99 chr12 128485453 128485755 -15300700 - MLT1A2 LTR MaLR -108 266 1 362 208 78 0 chr12 128485854 128485931 -15300524 + L2 LINE L2 3209 3291 -22 284 344 8 33 chr12 128486071 128486193 -15300262 + MIR SINE MIR 35 153 -55 226 226 6 116 chr12 128487371 128487535 -15298920 - L1ME4a LINE L1 -2 6119 5974 544 250 21 21 chr12 128487576 128487716 -15298739 - MIR SINE MIR -10 252 113 304 274 47 38 chr12 128487843 128487949 -15298506 - L1ME4a LINE L1 -331 5831 5725 287 248 108 26 chr12 128488067 128488205 -15298250 - L1ME4a LINE L1 -419 5702 5562 206 309 12 36 chr12 128488209 128488293 -15298162 + L2 LINE L2 3186 3267 -5 204 191 87 130 chr12 128488622 128488737 -15297718 - MER5A DNA MER1_type -45 144 35 * 244 208 0 0 chr12 128488707 128488755 -15297700 + MER5A DNA MER1_type 137 184 -5 332 320 0 0 chr12 128488767 128488864 -15297591 - L2 LINE L2 -571 2743 2647 1426 50 0 0 chr12 128490155 128490335 -15296120 + AluY SINE Alu 131 310 -1 672 156 0 9 chr12 128490335 128490444 -15296011 - AluJo/FLAM SINE Alu -198 114 7 2392 41 0 7 chr12 128490461 128490754 -15295701 - AluY SINE Alu -16 295 5 1963 123 10 3 chr12 128490764 128491064 -15295391 - AluSx SINE Alu -10 302 1 719 157 0 0 chr12 128492446 128492548 -15293907 - MER7A DNA MER2_type 0 337 236 * 2048 100 74 20 chr12 128492545 128492896 -15293559 - THE1C LTR MaLR -5 370 1 1130 172 54 23 chr12 128492896 128493115 -15293340 - MER7A DNA MER2_type -122 224 1 350 260 203 0 chr12 128493239 128493362 -15293093 - MIR SINE MIR 0 262 115 374 259 111 49 chr12 128493941 128494103 -15292352 + MIR3 SINE MIR 17 188 -20 1773 177 0 3 chr12 128494136 128494436 -15292019 + AluJb SINE Alu 1 299 -13 2412 69 0 0 chr12 128498947 128499253 -15287202 - AluY SINE Alu -5 306 1 645 195 31 8 chr12 128499440 128499568 -15286887 - MIR SINE MIR -21 241 111 3620 139 44 0 chr12 128499570 128500166 -15286289 - L1MA8 LINE L1 -137 6154 5533 820 143 41 0 chr12 128500171 128500318 -15286137 + L1MA8 LINE L1 6128 6280 -11 234 204 0 0 chr12 128500589 128500633 -15285822 + Charlie8 DNA MER1_type 129 172 -2245 312 326 40 17 chr12 128501220 128501395 -15285060 + MER5A DNA MER1_type 3 181 -8 1464 158 31 118 chr12 128504127 128504508 -15281947 + MLT1A1 LTR MaLR 18 365 0 1290 136 27 36 chr12 128505423 128505644 -15280811 - MER20 DNA MER1_type 0 219 1 300 137 0 0 chr12 128508984 128509035 -15277420 + (A)n Simple_repeat Simple_repeat 1 51 0 1728 132 7 65 chr12 128510068 128510407 -15276048 + AluJo SINE Alu 1 321 0 1015 167 0 6 chr12 128510417 128510597 -15275858 + FRAM SINE Alu 1 171 -5 2491 58 0 6 chr12 128510856 128511168 -15275287 - AluY SINE Alu -1 310 1 693 254 53 43 chr12 128511869 128512078 -15274377 - MIR SINE MIR -12 250 40 2336 80 0 0 chr12 128512081 128512383 -15274072 + AluSg SINE Alu 1 302 -8 799 178 0 15 chr12 128513357 128513492 -15272963 + FLAM_A SINE Alu 1 133 0 1085 219 5 5 chr12 128513700 128513905 -15272550 + MER58A DNA MER1_type 19 223 -1 276 273 53 53 chr12 128515024 128515156 -15271299 + L2 LINE L2 3167 3298 -15 764 284 96 38 chr12 128515315 128515709 -15270746 + L1MC4a LINE L1 5520 5936 -1872 1906 132 3 10 chr12 128515722 128516025 -15270430 + AluJb SINE Alu 12 312 0 477 216 39 0 chr12 128516055 128516157 -15270298 + L1M4 LINE L1 14 119 -6423 928 239 7 72 chr12 128516287 128516580 -15269875 + L1M4 LINE L1 120 393 -6149 1795 163 29 46 chr12 128516608 128516703 -15269752 + MER2 DNA MER2_type 1 96 -248 1748 146 36 0 chr12 128516703 128516984 -15269471 + AluJb SINE Alu 1 291 -21 1795 163 29 46 chr12 128516984 128517238 -15269217 + MER2 DNA MER2_type 96 344 0 517 189 42 0 chr12 128517601 128517696 -15268759 - L1M4 LINE L1 -6423 119 21 1788 149 3 3 chr12 128517722 128518011 -15268444 - AluJb SINE Alu -18 294 6 298 310 47 31 chr12 128518068 128518197 -15268258 - L1MC4a LINE L1 -1941 5867 5737 230 295 16 93 chr12 128518450 128518579 -15267876 + L2 LINE L2 3182 3300 -13 1003 263 101 41 chr12 128519292 128519497 -15266958 + L1MC4a LINE L1 5568 5759 -2049 2296 93 0 0 chr12 128519497 128519797 -15266658 + AluSx SINE Alu 1 300 -12 1003 263 101 41 chr12 128519797 128520108 -15266347 + L1MC4a LINE L1 5759 6115 -1693 2314 82 0 3 chr12 128520162 128520466 -15265989 + AluSq SINE Alu 1 303 -10 297 247 12 37 chr12 128520663 128520771 -15265684 + MLT1H1 LTR MaLR 44 146 -409 336 291 221 8 chr12 128520785 128521039 -15265416 + MLT1H1 LTR MaLR 273 555 0 455 306 34 35 chr12 128521117 128521359 -15265096 + L1MC4a LINE L1 5603 5822 -299 2280 94 0 0 chr12 128521571 128521868 -15264587 - AluSg SINE Alu -11 299 3 42 0 0 0 chr12 128522193 128522235 -15264220 + AT_rich Low_complexity Low_complexity 1 42 0 183 129 0 0 chr12 128522277 128522308 -15264147 + (GA)n Simple_repeat Simple_repeat 1 31 0 305 62 16 47 chr12 128522377 128522441 -15264014 + (GGGGA)n Simple_repeat Simple_repeat 1 62 0 202 211 15 15 chr12 128522445 128522577 -15263878 + GA-rich Low_complexity Low_complexity 1 132 0 990 163 12 12 chr12 128523296 128523456 -15262999 - FRAM SINE Alu -4 162 3 2199 115 0 3 chr12 128523593 128523905 -15262550 + AluSq SINE Alu 1 311 -2 235 314 137 16 chr12 128524396 128524520 -15261935 + MIR SINE MIR 110 248 -14 2139 118 0 0 chr12 128524611 128524915 -15261540 - AluSx SINE Alu -8 304 1 1025 184 44 29 chr12 128525718 128525924 -15260531 - MER20 DNA MER1_type -7 212 4 2111 112 0 0 chr12 128526107 128526402 -15260053 - AluSx SINE Alu -17 295 1 1307 101 6 0 chr12 128526812 128526991 -15259464 + AluSg/x SINE Alu 131 310 0 2096 127 0 0 chr12 128526997 128527297 -15259158 + AluSx SINE Alu 1 300 -12 5153 78 4 7 chr12 128527465 128528157 -15258298 - L1PA13 LINE L1 0 6163 5474 2115 168 31 36 chr12 128528565 128528726 -15257729 + MER65A LTR ERV1 1 161 -284 2092 68 0 0 chr12 128528726 128528989 -15257466 - AluSc SINE Alu -46 263 1 2115 168 31 36 chr12 128528989 128529274 -15257181 + MER65A LTR ERV1 161 445 0 2327 99 0 22 chr12 128529665 128529977 -15256478 - AluSg SINE Alu -5 305 1 566 182 61 8 chr12 128530131 128530263 -15256192 + L1MC4 LINE L1 7522 7660 -382 1728 114 20 57 chr12 128530362 128530660 -15255795 + L1MC1 LINE L1 6036 6322 -11 289 311 30 23 chr12 128530677 128530809 -15255646 + MLT1K LTR MaLR 393 525 -63 376 181 261 36 chr12 128530851 128530949 -15255506 + L1MC4 LINE L1 7785 7860 -182 240 35 0 0 chr12 128530949 128530978 -15255477 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 450 0 0 0 chr12 128530977 128531027 -15255428 + (TG)n Simple_repeat Simple_repeat 2 51 0 376 181 261 36 chr12 128530978 128531066 -15255389 + L1MC4 LINE L1 7860 7953 -89 1522 167 22 26 chr12 128532873 128533142 -15253313 - AluJo SINE Alu -40 272 5 241 319 11 11 chr12 128533893 128533987 -15252468 + GA-rich Low_complexity Low_complexity 2 95 0 4487 178 27 18 chr12 128535558 128536134 -15250321 + L1MB7 LINE L1 5171 5753 -431 2007 138 69 29 chr12 128536134 128536481 -15249974 + THE1B LTR MaLR 1 361 -3 4487 178 27 18 chr12 128536481 128536908 -15249547 + L1MB7 LINE L1 5753 6175 -9 2353 109 0 3 chr12 128537285 128537598 -15248857 + AluSx SINE Alu 1 312 0 693 298 77 31 chr12 128537882 128538234 -15248221 + L1MC4a LINE L1 5577 5944 -1864 2269 106 3 0 chr12 128538240 128538533 -15247922 - AluSp SINE Alu -11 302 9 2367 116 0 0 chr12 128538599 128538910 -15247545 - AluSx SINE Alu -1 311 1 2483 81 7 0 chr12 128539021 128539329 -15247126 - AluSp SINE Alu -3 310 1 245 409 0 0 chr12 128541169 128541262 -15245193 + MIR3 SINE MIR 89 181 -27 2319 103 0 0 chr12 128542155 128542456 -15243999 - AluSx SINE Alu -11 301 1 263 246 69 46 chr12 128543789 128543919 -15242536 + MIR SINE MIR 40 172 -90 186 302 0 0 chr12 128543928 128543971 -15242484 + L2 LINE L2 3217 3259 -13 1017 151 6 6 chr12 128544098 128544264 -15242191 + FRAM SINE Alu 1 166 0 180 0 0 0 chr12 128544587 128544607 -15241848 + (A)n Simple_repeat Simple_repeat 1 20 0 180 365 126 12 chr12 128544775 128545101 -15241354 + L3 LINE CR1 702 1064 -513 836 96 78 0 chr12 128545198 128545313 -15241142 + FLAM_C SINE Alu 1 124 -19 293 284 73 0 chr12 128545383 128545492 -15240963 + MIR SINE MIR 143 259 -3 355 292 157 22 chr12 128545587 128545765 -15240690 + L3 LINE CR1 1322 1523 -54 2467 63 27 0 chr12 128545847 128546147 -15240308 + AluY SINE Alu 1 308 -3 261 235 61 61 chr12 128546147 128546245 -15240210 + MER117 DNA MER1_type 65 162 -35 2101 134 3 10 chr12 128546331 128546645 -15239810 + AluSx SINE Alu 1 312 0 216 0 0 0 chr12 128547201 128547225 -15239230 + (TG)n Simple_repeat Simple_repeat 2 25 0 836 113 13 53 chr12 128547240 128547390 -15239065 - L1MB3 LINE L1 0 6183 6040 1507 150 0 59 chr12 128547396 128547682 -15238773 - AluJo SINE Alu -4 308 40 183 302 57 66 chr12 128548305 128548411 -15238044 - L2 LINE L2 -3 3310 3206 1642 144 11 4 chr12 128548540 128548803 -15237652 + L1PB3 LINE L1 5890 6154 0 1768 160 24 17 chr12 128548832 128549125 -15237330 + AluJb SINE Alu 1 295 -17 2998 157 12 2 chr12 128549129 128549646 -15236809 + L1MC1 LINE L1 5812 6333 0 400 241 167 62 chr12 128550619 128550960 -15235495 + L1ME4a LINE L1 5743 6119 -2 2286 111 3 0 chr12 128552035 128552341 -15234114 + AluSx SINE Alu 1 307 -5 2375 93 3 6 chr12 128552382 128552694 -15233761 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr12 128553003 128553030 -15233425 + (TA)n Simple_repeat Simple_repeat 1 27 0 1960 110 0 0 chr12 128553031 128553285 -15233170 - AluSx SINE Alu -18 294 41 298 266 43 11 chr12 128554081 128554175 -15232280 - MER91B DNA MER1_type -2 188 92 317 302 17 26 chr12 128554196 128554312 -15232143 - MER91B DNA MER1_type -61 129 15 2053 121 16 16 chr12 128554437 128554742 -15231713 + AluSx SINE Alu 1 305 -7 1130 167 28 9 chr12 128554765 128554980 -15231475 + MER20 DNA MER1_type 1 219 0 414 275 46 9 chr12 128555175 128555284 -15231171 - MER81 DNA DNA 0 114 2 1818 164 3 43 chr12 128555816 128556139 -15230316 - AluJb SINE Alu -2 310 1 2124 60 0 0 chr12 128558276 128558526 -15227929 + AluY SINE Alu 62 311 0 691 265 22 6 chr12 128559208 128559389 -15227066 - MIR SINE MIR -77 185 2 2339 103 3 0 chr12 128559791 128560092 -15226363 + AluSp SINE Alu 1 302 -11 446 222 46 0 chr12 128560862 128560970 -15225485 - MIR SINE MIR 0 262 150 239 260 158 16 chr12 128561145 128561272 -15225183 - MIR SINE MIR -111 151 7 259 214 276 0 chr12 128561637 128561735 -15224720 + L1MA10 LINE L1 6210 6334 0 1938 229 40 52 chr12 128562113 128562711 -15223744 + L1ME3 LINE L1 5572 6162 0 351 78 0 0 chr12 128564056 128564107 -15222348 + (CA)n Simple_repeat Simple_repeat 2 52 0 661 265 153 37 chr12 128564247 128564625 -15221830 - L2 LINE L2 0 3313 2892 352 279 67 56 chr12 128564645 128564819 -15221636 - MER112 DNA MER1_type 0 260 85 416 188 68 75 chr12 128564819 128564952 -15221503 - MER104 DNA Tc2 0 180 49 237 118 176 0 chr12 128564992 128565043 -15221412 - MER112 DNA MER1_type -193 67 8 664 295 70 42 chr12 128565105 128565347 -15221108 - L2 LINE L2 -508 2806 2549 185 0 0 39 chr12 128565347 128565373 -15221082 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 664 295 70 42 chr12 128565373 128565489 -15220966 - L2 LINE L2 -765 2549 2438 24 0 0 0 chr12 128565582 128565606 -15220849 + AT_rich Low_complexity Low_complexity 1 24 0 2210 92 27 3 chr12 128565630 128565924 -15220531 + AluY SINE Alu 1 301 -10 1693 197 35 130 chr12 128566011 128566803 -15219652 + L1MEc LINE L1 1082 1798 -4598 812 149 43 43 chr12 128566815 128567003 -15219452 + L1MA5A LINE L1 6106 6293 -4 716 244 35 57 chr12 128567391 128567620 -15218835 - MER58A DNA MER1_type 0 224 1 510 127 37 119 chr12 128568238 128568330 -15218125 - Charlie1 DNA MER1_type -34 2727 2629 2352 102 0 0 chr12 128568330 128568625 -15217830 + AluSg SINE Alu 1 295 -15 2322 76 3 7 chr12 128568628 128568931 -15217524 + AluSc SINE Alu 1 302 -7 510 127 37 119 chr12 128568931 128568968 -15217487 - Charlie1 DNA MER1_type -134 2627 2605 702 163 85 7 chr12 128568986 128569074 -15217381 - Charlie1a DNA MER1_type -2608 153 49 1898 151 7 10 chr12 128569074 128569372 -15217083 + AluJb SINE Alu 4 300 -12 702 163 85 7 chr12 128569372 128569424 -15217031 - Charlie1a DNA MER1_type -2712 49 2 447 35 0 0 chr12 128571938 128571995 -15214460 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 21 0 0 0 chr12 128572872 128572893 -15213562 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr12 128573439 128573467 -15212988 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 276 17 0 chr12 128573931 128573989 -15212466 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 540 273 40 111 chr12 128574565 128574643 -15211812 - L2 LINE L2 -789 2525 2443 2361 97 0 7 chr12 128574643 128574951 -15211504 + AluSg SINE Alu 1 306 -4 540 273 40 111 chr12 128574951 128575224 -15211231 - L2 LINE L2 -871 2443 2199 784 193 0 59 chr12 128575304 128575491 -15210964 - MIR SINE MIR -62 200 25 365 182 15 0 chr12 128576267 128576333 -15210122 + AluJ/FLAM SINE Alu 14 80 -222 26 30 0 0 chr12 128576358 128576391 -15210064 + AT_rich Low_complexity Low_complexity 1 33 0 374 148 0 0 chr12 128576392 128576453 -15210002 + FLAM SINE Alu 71 131 -2 205 297 99 0 chr12 128576835 128576926 -15209529 + L2 LINE L2 3173 3272 0 437 207 16 99 chr12 128577224 128577387 -15209068 - MIR SINE MIR -65 143 31 3996 100 19 85 chr12 128577387 128578035 -15208420 - MER51C LTR ERV1 0 640 38 2060 122 38 0 chr12 128578035 128578322 -15208133 + AluSx SINE Alu 1 298 -14 3996 100 19 85 chr12 128578322 128578354 -15208101 - MER51C LTR ERV1 -602 38 5 412 99 26 0 chr12 128578357 128578433 -15208022 - MER51A LTR ERV1 -579 61 1 1942 123 25 81 chr12 128580321 128580553 -15205902 + MER1B DNA MER1_type 1 208 -2504 2217 121 3 0 chr12 128580553 128580860 -15205595 + AluSx SINE Alu 1 308 -4 1942 123 25 81 chr12 128580860 128580985 -15205470 + MER1B DNA MER1_type 208 338 -1 2361 113 0 0 chr12 128581093 128581393 -15205062 + AluSx SINE Alu 1 300 -12 1828 172 21 0 chr12 128581539 128581829 -15204626 + AluJo SINE Alu 1 296 -16 1712 189 0 28 chr12 128583943 128584261 -15202194 + AluJo SINE Alu 1 309 -3 1330 168 4 38 chr12 128584479 128584717 -15201738 - AluJo SINE Alu -82 230 1 285 287 90 24 chr12 128585049 128585216 -15201239 + L1MEd LINE L1 8 185 -5934 346 248 37 0 chr12 128585388 128585497 -15200958 + L1MEd LINE L1 721 833 -5286 1236 132 47 5 chr12 128585635 128585825 -15200630 + AluJo SINE Alu 114 311 -1 522 256 72 30 chr12 128585827 128585989 -15200466 + L1MEd LINE L1 947 1126 -4993 2288 104 3 7 chr12 128585989 128586296 -15200159 - AluSx SINE Alu -6 306 1 522 256 72 30 chr12 128586296 128586395 -15200060 + L1MEd LINE L1 1126 1219 -4900 570 168 28 47 chr12 128586410 128586517 -15199938 + AluJo SINE Alu 104 208 -104 284 15 108 0 chr12 128586544 128586609 -15199846 + (TA)n Simple_repeat Simple_repeat 2 73 0 2022 156 0 3 chr12 128586658 128586960 -15199495 - AluJb SINE Alu -11 301 1 1255 133 27 0 chr12 128587040 128587228 -15199227 + L1MA1 LINE L1 5601 5793 -509 1285 71 71 62 chr12 128587228 128587441 -15199014 + L1PA11 LINE L1 5949 6174 0 3785 93 13 2 chr12 128587442 128587970 -15198485 + L1MA1 LINE L1 5769 6302 0 2309 114 0 0 chr12 128589101 128589400 -15197055 - AluSq SINE Alu -14 299 1 524 133 0 0 chr12 128590597 128590680 -15195775 + L2 LINE L2 3231 3313 0 21 0 0 0 chr12 128591446 128591467 -15194988 + AT_rich Low_complexity Low_complexity 1 21 0 359 59 20 0 chr12 128594162 128594213 -15192242 + L1PA7 LINE L1 6103 6154 0 520 191 191 0 chr12 128594301 128594448 -15192007 + MER104 DNA Tc2 1 175 -5 438 159 28 9 chr12 128594569 128594623 -15191832 + Charlie5 DNA MER1_type 2445 2497 -88 2257 89 20 3 chr12 128594623 128594916 -15191539 - AluSq SINE Alu -15 298 1 438 159 28 9 chr12 128594916 128594968 -15191487 + Charlie5 DNA MER1_type 2497 2553 -32 1848 163 64 20 chr12 128595111 128595503 -15190952 + L1MB2 LINE L1 5762 6170 -1 678 186 126 12 chr12 128595649 128595741 -15190714 + L1MA9 LINE L1 6127 6207 -105 255 61 0 0 chr12 128595741 128595774 -15190681 + (TG)n Simple_repeat Simple_repeat 2 34 0 678 186 126 12 chr12 128595774 128595848 -15190607 + L1MA9 LINE L1 6207 6312 0 1848 167 3 3 chr12 128595879 128596167 -15190288 + AluJb SINE Alu 1 288 -24 2356 93 0 0 chr12 128596179 128596470 -15189985 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr12 128596470 128596493 -15189962 + AT_rich Low_complexity Low_complexity 1 23 0 2396 82 0 0 chr12 128598161 128598452 -15188003 + AluSx SINE Alu 1 291 -21 2485 81 0 0 chr12 128598578 128598885 -15187570 + AluSg SINE Alu 1 307 -3 2129 121 3 0 chr12 128600127 128600409 -15186046 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr12 128600409 128600433 -15186022 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 886 215 77 19 chr12 128600494 128600754 -15185701 + ORSL DNA AcHobo 1 275 0 21 0 0 0 chr12 128601496 128601517 -15184938 + AT_rich Low_complexity Low_complexity 1 21 0 2292 103 0 0 chr12 128601525 128601816 -15184639 + AluSg SINE Alu 1 291 -19 1767 201 6 14 chr12 128603099 128603443 -15183012 - MER58B DNA MER1_type 0 341 1 248 242 0 16 chr12 128603571 128603633 -15182822 + CT-rich Low_complexity Low_complexity 1 61 0 182 37 37 0 chr12 128605524 128605551 -15180904 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 2616 138 64 58 chr12 128606362 128606754 -15179701 + MLT1D LTR MaLR 3 400 -105 2062 118 0 51 chr12 128606754 128607067 -15179388 - AluSx SINE Alu -14 298 2 2616 138 64 58 chr12 128607067 128607174 -15179281 + MLT1D LTR MaLR 400 505 0 480 143 41 10 chr12 128607280 128607378 -15179077 - MIR SINE MIR -68 194 94 1610 153 0 108 chr12 128608028 128608170 -15178285 + AluJo SINE Alu 1 88 -214 1799 145 43 0 chr12 128608170 128608446 -15178009 - AluJb SINE Alu -24 288 1 1610 153 0 108 chr12 128608446 128608636 -15177819 + AluJo SINE Alu 88 297 -5 2499 74 0 0 chr12 128608638 128608947 -15177508 + AluY SINE Alu 1 309 -2 662 256 6 0 chr12 128608981 128609149 -15177306 + MIR SINE MIR 94 262 0 506 204 33 83 chr12 128610233 128610414 -15176041 + MER5B DNA MER1_type 4 175 -3 2155 84 3 48 chr12 128610856 128611202 -15175253 - AluSc SINE Alu 0 309 1 210 155 17 35 chr12 128611361 128611419 -15175036 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 197 128 21 0 chr12 128611763 128611810 -15174645 + GA-rich Low_complexity Low_complexity 1 48 0 1019 108 184 0 chr12 128611851 128612036 -15174419 + MER20 DNA MER1_type 1 219 0 196 318 16 0 chr12 128612037 128612100 -15174355 - L2 LINE L2 -68 3204 3141 333 200 122 11 chr12 128612136 128612226 -15174229 - MIR SINE MIR -12 250 151 261 317 0 12 chr12 128612317 128612399 -15174056 + MIR SINE MIR 17 97 -165 2089 123 0 17 chr12 128613660 128613961 -15172494 - AluSc SINE Alu -13 296 1 1215 93 0 6 chr12 128613988 128614178 -15172277 + AluSc SINE Alu 120 308 0 22 0 0 0 chr12 128614283 128614305 -15172150 + AT_rich Low_complexity Low_complexity 1 22 0 254 206 14 0 chr12 128614306 128614379 -15172076 + (CA)n Simple_repeat Simple_repeat 1 74 0 499 288 126 33 chr12 128614502 128614913 -15171542 + L2 LINE L2 2551 2998 -274 387 177 42 31 chr12 128614928 128615024 -15171431 + L2 LINE L2 3193 3289 -24 234 105 0 0 chr12 128615029 128615067 -15171388 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 290 258 43 21 chr12 128615083 128615176 -15171279 + L2 LINE L2 3196 3290 -23 245 330 21 10 chr12 128615350 128615447 -15171008 + L2 LINE L2 3168 3265 -48 330 87 0 0 chr12 128615455 128615501 -15170954 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 387 360 34 6 chr12 128616061 128616236 -15170219 - MIR SINE MIR -78 184 5 2093 125 0 16 chr12 128616288 128616591 -15169864 + AluSx SINE Alu 1 298 -14 221 316 187 0 chr12 128616620 128616775 -15169680 + MIR SINE MIR 65 248 -14 488 242 38 51 chr12 128616923 128617080 -15169375 + MIR SINE MIR 88 242 -20 244 228 0 18 chr12 128617157 128617214 -15169241 - L2 LINE L2 -4 3309 3254 354 348 102 15 chr12 128617387 128617720 -15168735 - L2 LINE L2 -557 2757 2396 770 297 5 0 chr12 128619537 128619749 -15166706 + MIR SINE MIR 50 262 0 374 338 47 0 chr12 128620449 128620597 -15165858 - MIR SINE MIR 0 262 108 1336 103 98 23 chr12 128620926 128621140 -15165315 - MER30 DNA MER1_type 0 230 1 718 261 107 17 chr12 128626398 128626632 -15159823 + MIR SINE MIR 8 262 0 2378 105 0 6 chr12 128627041 128627356 -15159099 + AluSq SINE Alu 1 313 0 723 265 34 89 chr12 128627682 128628207 -15158248 + L1MEd LINE L1 543 1038 -5081 381 282 135 47 chr12 128628210 128628380 -15158075 + MER5A DNA MER1_type 4 188 -1 402 172 91 0 chr12 128628394 128628493 -15157962 + L1MEd LINE L1 1043 1150 -4969 266 286 0 0 chr12 128628742 128628805 -15157650 + L2 LINE L2 3206 3268 -4 36 53 0 0 chr12 128629079 128629136 -15157319 + AT_rich Low_complexity Low_complexity 1 57 0 243 0 0 0 chr12 128629210 128629237 -15157218 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 4387 136 70 96 chr12 128630637 128631574 -15154881 + MER21A LTR ERV1 13 925 -6 2094 123 3 19 chr12 128631607 128631916 -15154539 + AluSx SINE Alu 1 304 -8 1520 186 80 4 chr12 128632231 128632506 -15153949 + AluJb SINE Alu 1 296 -16 2310 99 3 7 chr12 128633132 128633436 -15153019 - AluSq SINE Alu -10 303 1 1642 143 0 34 chr12 128633634 128633900 -15152555 - AluJo SINE Alu -18 294 38 343 77 0 0 chr12 128633934 128633986 -15152469 - Alu SINE Alu -2 298 247 2335 63 3 7 chr12 128635959 128636243 -15150212 + AluSx SINE Alu 17 299 -13 376 19 38 0 chr12 128636269 128636322 -15150133 + (CA)n Simple_repeat Simple_repeat 1 55 0 2379 92 3 0 chr12 128636613 128636908 -15149547 + AluSp SINE Alu 1 296 -17 390 230 45 30 chr12 128637138 128637332 -15149123 + MIR SINE MIR 17 250 -12 383 169 102 0 chr12 128637762 128637856 -15148599 - MER5A DNA MER1_type -80 109 4 1201 179 9 5 chr12 128637978 128638196 -15148259 + MER20 DNA MER1_type 1 219 0 2435 69 0 3 chr12 128638418 128638709 -15147746 + AluY SINE Alu 1 290 -21 798 164 0 8 chr12 128638981 128639115 -15147340 + FLAM_C SINE Alu 1 133 0 394 285 131 27 chr12 128639245 128639466 -15146989 + MIR SINE MIR 5 248 -14 1185 164 0 96 chr12 128641276 128641457 -15144998 + L1MD3 LINE L1 7730 7874 -121 2193 121 10 0 chr12 128641457 128641763 -15144692 + AluSx SINE Alu 1 309 -3 1185 164 0 96 chr12 128641763 128641873 -15144582 + L1MD3 LINE L1 7874 7993 -2 2027 138 10 7 chr12 128641877 128642175 -15144280 + AluJb SINE Alu 1 299 -13 2364 100 3 0 chr12 128642202 128642501 -15143954 + AluSp SINE Alu 1 300 -13 726 164 33 59 chr12 128642566 128642718 -15143737 + Tigger7 DNA MER2_type 2439 2586 -1 182 347 32 16 chr12 128644377 128644501 -15141954 + L2 LINE L2 2802 2927 -387 208 279 67 58 chr12 128644612 128644716 -15141739 + L2 LINE L2 3168 3272 0 2376 102 3 0 chr12 128644946 128645249 -15141206 + AluSx SINE Alu 1 304 -8 324 0 0 0 chr12 128645297 128645333 -15141122 + (TA)n Simple_repeat Simple_repeat 1 36 0 575 241 31 52 chr12 128645462 128645584 -15140871 + MIR SINE MIR 76 194 -68 724 223 6 11 chr12 128645584 128645759 -15140696 + MER104 DNA MER2_type 4 177 -3 575 241 31 52 chr12 128645759 128645827 -15140628 + MIR SINE MIR 194 262 0 216 0 0 0 chr12 128645979 128646003 -15140452 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2208 77 0 18 chr12 128646005 128646290 -15140165 - AluY SINE Alu -31 280 1 21 0 0 0 chr12 128646725 128646746 -15139709 + AT_rich Low_complexity Low_complexity 1 21 0 2070 135 23 0 chr12 128646976 128647280 -15139175 + AluSx SINE Alu 1 311 -1 2275 102 0 3 chr12 128648633 128648927 -15137528 - AluSc SINE Alu -16 293 1 2199 95 24 17 chr12 128649762 128650058 -15136397 - AluSx SINE Alu -14 298 1 205 185 31 15 chr12 128650170 128650235 -15136220 + GA-rich Low_complexity Low_complexity 2 67 0 1526 75 5 0 chr12 128650340 128650526 -15135929 + AluSg/x SINE Alu 93 279 -31 582 15 0 0 chr12 128650530 128650597 -15135858 + (GAGAA)n Simple_repeat Simple_repeat 2 68 0 1029 147 47 0 chr12 128651820 128651990 -15134465 + MER20 DNA MER1_type 31 208 -11 1621 185 32 0 chr12 128652067 128652348 -15134107 - AluJb SINE Alu -22 290 1 2642 48 0 3 chr12 128652778 128653087 -15133368 + AluY SINE Alu 1 308 -3 222 191 0 0 chr12 128654242 128654289 -15132166 + GA-rich Low_complexity Low_complexity 1 47 0 342 318 18 9 chr12 128654368 128654478 -15131977 - MIR SINE MIR -65 143 33 2270 119 0 0 chr12 128654575 128654878 -15131577 + AluSc SINE Alu 1 303 -6 502 265 66 53 chr12 128655865 128656177 -15130278 + L1ME4a LINE L1 5564 5881 -240 318 307 31 0 chr12 128656430 128656557 -15129898 + MIR SINE MIR 99 229 -33 2618 68 0 0 chr12 128657197 128657505 -15128950 + AluSc SINE Alu 1 308 -1 239 208 0 0 chr12 128658922 128658970 -15127485 - MER5A DNA MER1_type -6 183 136 688 155 23 23 chr12 128658979 128659108 -15127347 + FLAM_C SINE Alu 2 130 -3 451 234 18 45 chr12 128659146 128659257 -15127198 - L2 LINE L2 -24 3289 3182 2390 89 0 10 chr12 128659258 128659562 -15126893 - AluSx SINE Alu -10 302 2 219 292 31 10 chr12 128659646 128659742 -15126713 + MER5A DNA MER1_type 70 167 -22 669 259 0 15 chr12 128660875 128661072 -15125383 - LTR33 LTR ERVL 0 521 328 725 106 21 84 chr12 128661152 128661225 -15125230 + MER5A DNA MER1_type 1 62 -127 1688 200 0 3 chr12 128661225 128661525 -15124930 + AluJo SINE Alu 1 299 -13 725 106 21 84 chr12 128661525 128661593 -15124862 + MER5A DNA MER1_type 62 133 -56 2284 114 0 0 chr12 128662368 128662665 -15123790 - AluSx SINE Alu -15 297 1 876 246 100 69 chr12 128662686 128663076 -15123379 + MLT1J LTR MaLR 1 402 -109 277 111 37 37 chr12 128663074 128663128 -15123327 + MLT1J1 LTR MaLR 393 446 0 * 2287 115 0 0 chr12 128663299 128663604 -15122851 + AluSg SINE Alu 1 305 -5 190 332 168 14 chr12 128664400 128664614 -15121841 - L2 LINE L2 -484 2830 2584 2240 100 10 0 chr12 128664720 128665009 -15121446 + AluSg SINE Alu 1 292 -18 1059 223 12 84 chr12 128665144 128665212 -15121243 - MER46C DNA MER2_type -27 311 240 2342 100 0 0 chr12 128665212 128665512 -15120943 - AluSx SINE Alu -12 300 1 1059 223 12 84 chr12 128665512 128665775 -15120680 - MER46C DNA MER2_type -98 240 4 2243 112 0 6 chr12 128666029 128666342 -15120113 + AluY SINE Alu 1 311 0 2374 100 0 0 chr12 128666561 128666861 -15119594 + AluSx SINE Alu 1 300 -12 2042 101 31 7 chr12 128666861 128667134 -15119321 + AluSg SINE Alu 1 284 -26 369 0 0 0 chr12 128667134 128667175 -15119280 + (CA)n Simple_repeat Simple_repeat 2 42 0 2042 101 31 7 chr12 128667175 128667186 -15119269 + AluSg SINE Alu 284 293 -17 1461 192 58 10 chr12 128667812 128668103 -15118352 + AluJo SINE Alu 1 305 -7 2335 95 0 0 chr12 128668178 128668474 -15117981 - AluY SINE Alu -15 296 1 2085 146 3 0 chr12 128668502 128668804 -15117651 + AluSx SINE Alu 1 303 -9 2250 85 0 49 chr12 128668804 128669110 -15117345 + AluSx SINE Alu 6 296 -16 1839 155 55 0 chr12 128669934 128670224 -15116231 + AluJb SINE Alu 1 306 -6 2277 124 0 0 chr12 128670335 128670642 -15115813 + AluSx SINE Alu 1 307 -5 2487 84 0 3 chr12 128670866 128671176 -15115279 - AluY SINE Alu -2 309 1 258 208 0 0 chr12 128671566 128671614 -15114841 + A-rich Low_complexity Low_complexity 2 49 0 598 86 0 43 chr12 128671614 128671731 -15114724 + (GGGAA)n Simple_repeat Simple_repeat 2 113 0 275 301 16 8 chr12 128671745 128671868 -15114587 + MER113 DNA MER1_type? 1 124 -397 2449 199 121 81 chr12 128672149 128672279 -15114176 + L1MC4 LINE L1 6451 6574 -1234 766 192 0 0 chr12 128672279 128672409 -15114046 - FLAM_C SINE Alu -3 130 1 2449 199 121 81 chr12 128672409 128672945 -15113510 + L1MC4 LINE L1 6574 7252 -556 1930 156 13 0 chr12 128672945 128673246 -15113209 + AluJo SINE Alu 1 305 -7 2449 199 121 81 chr12 128673246 128673597 -15112858 + L1MC4 LINE L1 7252 7587 -221 2113 86 55 10 chr12 128673622 128673913 -15112542 + AluSx SINE Alu 1 304 -8 241 235 38 0 chr12 128673945 128674077 -15112378 + (TA)n Simple_repeat Simple_repeat 2 138 0 268 122 82 0 chr12 128674175 128674224 -15112231 + MLT2B2 LTR ERVL 458 510 -5 1843 128 25 15 chr12 128674258 128674532 -15111923 + AluSx SINE Alu 24 300 -12 31 0 0 0 chr12 128674545 128674576 -15111879 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chr12 128674609 128674636 -15111819 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 882 111 0 0 chr12 128674638 128674755 -15111700 - FLAM_C SINE Alu -12 131 15 27 0 0 0 chr12 128675060 128675087 -15111368 + AT_rich Low_complexity Low_complexity 1 27 0 743 158 0 0 chr12 128675095 128675215 -15111240 + AluJo/FLAM SINE Alu 1 120 -192 2325 80 7 7 chr12 128675218 128675517 -15110938 - AluSp SINE Alu -14 299 1 1838 125 55 17 chr12 128675546 128675835 -15110620 + AluSx SINE Alu 1 300 -12 2193 102 3 10 chr12 128675859 128676164 -15110291 + AluSg SINE Alu 1 303 -7 880 204 13 0 chr12 128676165 128676317 -15110138 + AluJo/FRAM SINE Alu 134 287 -25 2228 82 14 4 chr12 128676331 128676637 -15109818 + AluY SINE Alu 1 309 0 1102 156 0 0 chr12 128677456 128677636 -15108819 + L1MB4 LINE L1 5995 6174 -6 219 36 0 0 chr12 128677731 128677759 -15108696 + (CA)n Simple_repeat Simple_repeat 2 29 0 2089 139 0 0 chr12 128679427 128679721 -15106734 + AluSx SINE Alu 3 296 -16 2407 78 0 7 chr12 128679729 128680024 -15106431 + AluY SINE Alu 1 293 -18 2064 122 14 3 chr12 128680725 128681019 -15105436 + AluSx SINE Alu 1 297 -15 1674 155 3 42 chr12 128681024 128681308 -15105147 - AluJo SINE Alu -39 273 1 2254 114 0 0 chr12 128682029 128682328 -15104127 + AluSx SINE Alu 1 299 -13 2454 96 0 3 chr12 128682494 128682808 -15103647 + AluSp SINE Alu 1 313 0 264 241 50 75 chr12 128682918 128683117 -15103338 + L1MC/D LINE L1 5631 5824 -1984 225 83 0 0 chr12 128683171 128683207 -15103248 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1753 131 22 0 chr12 128683211 128683485 -15102970 - AluSx SINE Alu -32 280 1 1089 222 72 50 chr12 128683634 128683729 -15102726 + MLT1A1 LTR MaLR 1 92 -273 2094 96 43 7 chr12 128683729 128684030 -15102425 + AluSx SINE Alu 1 312 0 1089 222 72 50 chr12 128684030 128684110 -15102345 + MLT1A1 LTR MaLR 92 169 -196 2140 101 3 10 chr12 128684110 128684416 -15102039 + AluSg SINE Alu 1 304 -6 1808 119 17 10 chr12 128684416 128684706 -15101749 + L1PA13 LINE L1 5860 6152 -7 2293 86 0 16 chr12 128684706 128685020 -15101435 - AluSc SINE Alu 0 309 1 1089 222 72 50 chr12 128685024 128685263 -15101192 + MLT1A1 LTR MaLR 168 363 -2 1788 146 10 3 chr12 128685530 128685824 -15100631 - AluJb SINE Alu -16 296 1 472 267 0 9 chr12 128685918 128686023 -15100432 - L2 LINE L2 0 3313 3210 390 273 37 93 chr12 128686669 128686782 -15099673 - MIR SINE MIR 0 262 159 2170 96 17 0 chr12 128686782 128687074 -15099381 + AluSx SINE Alu 5 301 -11 390 273 37 93 chr12 128687074 128687121 -15099334 - MIR SINE MIR -103 159 111 413 261 144 12 chr12 128687384 128687625 -15098830 + MLT1H1 LTR MaLR 1 270 -285 846 223 84 42 chr12 128687629 128687727 -15098728 - MER58A DNA MER1_type -2196 224 132 1708 169 26 0 chr12 128687727 128688029 -15098426 + AluJo SINE Alu 1 310 -2 846 223 84 42 chr12 128688029 128688145 -15098310 - MER58A DNA MER1_type -2288 132 1 580 228 137 39 chr12 128688207 128688384 -15098071 + MLT1H1 LTR MaLR 286 493 -62 2062 112 10 0 chr12 128688384 128688678 -15097777 - AluSq SINE Alu -16 297 1 580 228 137 39 chr12 128688678 128688733 -15097722 + MLT1H1 LTR MaLR 493 541 -14 686 216 15 0 chr12 128688746 128688880 -15097575 - MER20 DNA MER1_type -2 217 82 697 137 70 144 chr12 128689048 128689137 -15097318 + ORSL DNA AcHobo 12 106 -169 1502 190 35 10 chr12 128689137 128689427 -15097028 + AluJo SINE Alu 1 297 -15 697 137 70 144 chr12 128689427 128689622 -15096833 + ORSL DNA AcHobo 106 275 0 394 227 64 78 chr12 128689647 128689740 -15096715 + MLT1K LTR MaLR 439 531 -57 1826 156 3 0 chr12 128689740 128690028 -15096427 - AluJb SINE Alu -23 289 1 394 227 64 78 chr12 128690028 128690075 -15096380 + MLT1K LTR MaLR 531 577 -11 232 264 88 33 chr12 128690075 128690166 -15096289 - MIR SINE MIR -161 101 6 1088 238 51 60 chr12 128690884 128691220 -15095235 + MER102b DNA MER1_type 6 338 -3 547 267 36 47 chr12 128691271 128691459 -15094996 + MLT1H LTR MaLR 16 212 -337 2156 115 3 0 chr12 128691459 128691764 -15094691 + AluSx SINE Alu 1 306 -6 547 267 36 47 chr12 128691764 128691824 -15094631 + MLT1H LTR MaLR 212 271 -278 1022 194 82 0 chr12 128691826 128692022 -15094433 + MER58A DNA MER1_type 1 212 -12 2214 92 0 0 chr12 128692029 128692324 -15094131 + AluSg SINE Alu 1 295 -15 478 240 120 49 chr12 128692327 128692604 -15093851 + MLT1H1 LTR MaLR 257 555 0 255 253 22 126 chr12 128692604 128692648 -15093807 + MER5A DNA MER1_type 27 74 -115 189 0 0 0 chr12 128692648 128692669 -15093786 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 255 253 22 126 chr12 128692669 128692762 -15093693 + MER5A DNA MER1_type 74 143 -46 1534 171 4 14 chr12 128692762 128693043 -15093412 + AluJo SINE Alu 1 278 -34 255 253 22 126 chr12 128693043 128693086 -15093369 + MER5A DNA MER1_type 143 189 0 22 0 0 0 chr12 128693405 128693427 -15093028 + AT_rich Low_complexity Low_complexity 1 22 0 190 236 35 160 chr12 128693842 128693986 -15092469 + MIR SINE MIR 5 130 -132 1762 165 0 3 chr12 128693997 128694288 -15092167 - AluJb SINE Alu -22 290 1 1845 146 0 37 chr12 128694446 128694769 -15091686 - AluSx SINE Alu 0 312 2 669 270 8 60 chr12 128695116 128695240 -15091215 - MIR SINE MIR 0 262 155 1679 112 4 30 chr12 128695240 128695542 -15090913 - AluSx SINE Alu 0 315 21 669 270 8 60 chr12 128695542 128695664 -15090791 - MIR SINE MIR -107 155 28 260 235 59 0 chr12 128695787 128695855 -15090600 + L1ME2 LINE L1 6027 6098 -66 1678 56 4 22 chr12 128695876 128696108 -15090347 + AluY SINE Alu 82 309 -2 1757 165 0 0 chr12 128696213 128696492 -15089963 + AluJb SINE Alu 3 281 -31 896 200 0 0 chr12 128696652 128696817 -15089638 + AluJo SINE Alu 1 165 -147 1853 88 11 23 chr12 128696893 128697156 -15089299 + AluSq SINE Alu 1 260 -53 195 42 0 0 chr12 128697168 128697192 -15089263 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 456 230 169 14 chr12 128697564 128697712 -15088743 + L2 LINE L2 3141 3311 -2 941 253 48 39 chr12 128697715 128698047 -15088408 - L2 LINE L2 -144 3169 2835 221 203 125 0 chr12 128698058 128698122 -15088333 - MIR SINE MIR -130 132 61 1145 255 82 60 chr12 128699041 128699391 -15087064 + L1ME3A LINE L1 5313 5685 -485 1951 110 14 7 chr12 128699391 128699682 -15086773 - AluSx SINE Alu -14 298 6 1145 255 82 60 chr12 128699682 128699967 -15086488 + L1ME3A LINE L1 5685 5962 -208 287 117 50 50 chr12 128699981 128700041 -15086414 - MADE1 DNA Mariner 0 80 21 183 205 0 0 chr12 128700171 128700210 -15086245 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr12 128700287 128700314 -15086141 + (CA)n Simple_repeat Simple_repeat 1 27 0 1510 187 0 48 chr12 128700436 128700751 -15085704 - AluJb SINE Alu -12 300 1 1791 138 17 14 chr12 128700779 128701075 -15085380 + AluSx SINE Alu 1 297 -15 274 206 168 9 chr12 128701388 128701495 -15084960 - MER113 DNA MER1_type? -397 124 1 406 341 106 18 chr12 128701507 128701677 -15084778 - MIR SINE MIR -76 186 2 192 269 90 30 chr12 128701677 128701736 -15084719 + L2 LINE L2 3249 3311 -2 785 239 0 38 chr12 128701907 128702051 -15084404 - MER5B DNA MER1_type 0 178 41 2359 101 51 25 chr12 128702051 128702406 -15084049 + THE1B LTR MaLR 1 364 0 785 239 0 38 chr12 128702406 128702445 -15084010 - MER5B DNA MER1_type -137 41 2 209 264 19 0 chr12 128702845 128702898 -15083557 + CT-rich Low_complexity Low_complexity 2 55 0 1950 137 0 19 chr12 128702939 128703254 -15083201 + AluSx SINE Alu 1 309 -3 4061 178 23 7 chr12 128703468 128703924 -15082531 + L1MB7 LINE L1 5203 5679 -505 2457 58 0 0 chr12 128703924 128704232 -15082223 + AluY SINE Alu 1 308 -3 4061 178 23 7 chr12 128704232 128704591 -15081864 + L1MB7 LINE L1 5679 6031 -153 971 169 12 6 chr12 128704689 128704861 -15081594 - L1MC1 LINE L1 -9 6324 6152 1557 156 18 21 chr12 128704861 128705144 -15081311 + AluJo SINE Alu 29 310 -2 790 145 11 22 chr12 128705145 128705324 -15081131 + GA-rich Low_complexity Low_complexity 2 178 0 4302 129 35 17 chr12 128705338 128705884 -15080571 - L1MC1 LINE L1 -168 6165 5602 2411 59 0 7 chr12 128705884 128706187 -15080268 - AluY SINE Alu -9 302 2 4302 129 35 17 chr12 128706187 128706344 -15080111 - L1MC1 LINE L1 -731 5602 5449 926 144 0 0 chr12 128706344 128706484 -15079971 + L1MB7 LINE L1 6020 6165 -19 1636 180 18 0 chr12 128706494 128706777 -15079678 - AluJo SINE Alu -24 288 1 853 216 124 5 chr12 128706841 128707035 -15079420 - MER20 DNA MER1_type 0 219 3 1497 161 55 7 chr12 128707746 128708019 -15078436 + AluJb SINE Alu 5 290 -22 1860 134 3 39 chr12 128708116 128708422 -15078033 + AluSx SINE Alu 1 295 -17 894 150 0 0 chr12 128708542 128708675 -15077780 - FLAM_C SINE Alu 0 133 1 292 305 19 29 chr12 128708676 128708781 -15077674 + L2 LINE L2 3169 3272 0 1929 120 41 0 chr12 128708999 128709290 -15077165 + AluSg SINE Alu 1 303 -7 884 292 107 23 chr12 128709390 128709554 -15076901 - L2 LINE L2 0 3313 3164 1716 158 0 4 chr12 128709554 128709832 -15076623 + AluSx SINE Alu 21 297 -15 884 292 107 23 chr12 128709832 128710061 -15076394 - L2 LINE L2 -149 3164 2887 391 143 0 0 chr12 128710065 128710128 -15076327 - MLT1D LTR MaLR 0 505 443 215 30 0 30 chr12 128710128 128710161 -15076294 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1947 98 25 14 chr12 128710163 128710448 -15076007 - AluSp SINE Alu -25 288 1 399 182 0 0 chr12 128710456 128710522 -15075933 - AluJo SINE Alu -6 296 231 897 146 25 32 chr12 128710522 128710563 -15075892 - AluJo SINE Alu -155 157 117 1435 235 78 44 chr12 128710563 128710997 -15075458 - LTR2 LTR ERV1 0 449 1 897 146 25 32 chr12 128710997 128711113 -15075342 - AluJo SINE Alu -195 117 1 1058 231 65 147 chr12 128711113 128711424 -15075031 - MLT1D LTR MaLR -51 454 196 1840 131 54 3 chr12 128711424 128711721 -15074734 - AluSx SINE Alu 0 312 1 1058 231 65 147 chr12 128711721 128711899 -15074556 - MLT1D LTR MaLR -309 196 5 2445 63 0 3 chr12 128711955 128712257 -15074198 - AluY SINE Alu -10 301 1 1820 143 17 0 chr12 128712592 128712879 -15073576 - AluSx SINE Alu -20 292 1 2140 111 3 3 chr12 128712888 128713194 -15073261 - AluSq SINE Alu -7 306 1 2230 94 0 0 chr12 128713205 128713502 -15072953 - AluSx SINE Alu -10 302 6 2433 131 26 3 chr12 128713503 128713885 -15072570 - L1MB3 LINE L1 -38 6145 5755 825 192 0 0 chr12 128713898 128714049 -15072406 - FRAM SINE Alu -15 161 11 2133 120 0 3 chr12 128714056 128714364 -15072091 - AluSx SINE Alu -5 307 1 1800 152 74 3 chr12 128714365 128714675 -15071780 - L1MB3 LINE L1 -417 5766 5435 363 60 0 0 chr12 128714924 128714974 -15071481 + (TG)n Simple_repeat Simple_repeat 1 50 0 209 150 33 33 chr12 128715029 128715067 -15071388 + T-rich Low_complexity Low_complexity 3 43 -19 866 201 41 12 chr12 128715067 128715236 -15071219 - FAM SINE Alu 0 175 2 209 150 33 33 chr12 128715236 128715257 -15071198 + T-rich Low_complexity Low_complexity 42 62 0 21 82 0 0 chr12 128715257 128715306 -15071149 + AT_rich Low_complexity Low_complexity 1 49 0 606 209 6 23 chr12 128715446 128715623 -15070832 + (CATA)n Simple_repeat Simple_repeat 2 175 0 276 222 0 0 chr12 128715640 128715712 -15070743 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 309 224 92 17 chr12 128715714 128715823 -15070632 + L1MC4 LINE L1 6571 6654 -1131 * 334 258 21 32 chr12 128715762 128715855 -15070600 - L1MC4 LINE L1 -1337 6705 6614 325 217 14 14 chr12 128715848 128715917 -15070538 - L1MCa LINE L1 -4362 2064 1996 * 183 129 0 0 chr12 128715926 128715957 -15070498 + (CA)n Simple_repeat Simple_repeat 2 32 0 573 266 78 7 chr12 128715958 128716112 -15070343 + MIR SINE MIR 31 195 -67 546 296 35 6 chr12 128716201 128716349 -15070106 - L2 LINE L2 -215 3057 2902 1459 136 68 34 chr12 128716349 128716482 -15069973 + L1MA9 LINE L1 6005 6132 -180 1857 113 57 3 chr12 128716482 128716764 -15069691 + AluSg SINE Alu 1 297 -13 1459 136 68 34 chr12 128716764 128716924 -15069531 + L1MA9 LINE L1 6132 6308 -4 546 296 35 6 chr12 128716924 128716944 -15069511 - L2 LINE L2 -370 2902 2884 1494 208 64 72 chr12 128717049 128717386 -15069069 - MLT1D LTR MaLR -9 496 158 1566 168 56 0 chr12 128717386 128717671 -15068784 + AluJb SINE Alu 1 301 -11 1494 208 64 72 chr12 128717671 128717712 -15068743 - MLT1D LTR MaLR -347 158 118 1920 140 13 0 chr12 128717712 128718012 -15068443 - AluSq SINE Alu -9 304 1 1494 208 64 72 chr12 128718012 128718043 -15068412 - MLT1D LTR MaLR -387 118 88 1828 145 3 7 chr12 128718043 128718346 -15068109 - AluSx SINE Alu -10 302 1 1494 208 64 72 chr12 128718346 128718434 -15068021 - MLT1D LTR MaLR -417 88 1 202 246 0 66 chr12 128718436 128718497 -15067958 + MIR SINE MIR 204 260 -2 1734 181 0 0 chr12 128718784 128719083 -15067372 + AluSq SINE Alu 1 299 -14 1229 137 5 10 chr12 128719084 128719281 -15067174 + AluJo SINE Alu 96 291 -21 198 0 0 0 chr12 128719281 128719303 -15067152 + (TA)n Simple_repeat Simple_repeat 2 23 0 1343 166 25 4 chr12 128719383 128719624 -15066831 - AluJo SINE Alu -34 278 33 638 234 41 0 chr12 128719633 128719804 -15066651 - L1MC4 LINE L1 -1988 5820 5643 4709 26 0 2 chr12 128719804 128720347 -15066108 - L1PA4 LINE L1 -5 6150 5609 1355 7 0 0 chr12 128720347 128720496 -15065959 + L1PA4 LINE L1 5476 5624 -531 523 267 169 34 chr12 128720495 128720761 -15065694 - L1MC4 LINE L1 -2155 5653 5352 * 1443 175 4 0 chr12 128720784 128721036 -15065419 - AluJb SINE Alu -13 299 47 1419 113 5 27 chr12 128721144 128721318 -15065137 - AluSg/x SINE Alu -6 306 130 262 0 26 26 chr12 128721318 128721357 -15065098 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2119 48 44 4 chr12 128721357 128721628 -15064827 - AluY SINE Alu -29 282 1 1419 113 5 27 chr12 128721628 128721674 -15064781 - AluSg/x SINE Alu -180 132 90 2954 166 62 49 chr12 128721685 128721732 -15064723 - L1MB4 LINE L1 -1 6179 6134 2076 90 30 0 chr12 128721732 128722031 -15064424 - AluSx SINE Alu -4 308 1 2954 166 62 49 chr12 128722031 128722195 -15064260 - L1MB4 LINE L1 -46 6134 5974 2043 114 0 19 chr12 128722195 128722527 -15063928 - AluSx SINE Alu 0 312 1 2954 166 62 49 chr12 128722527 128723006 -15063449 - L1MB4 LINE L1 -206 5974 5479 184 111 81 20 chr12 128723006 128723105 -15063350 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 282 193 133 0 chr12 128723139 128723222 -15063233 - L1MB4 LINE L1 -709 5474 5381 1719 161 3 10 chr12 128723842 128724133 -15062322 - AluJo SINE Alu -23 289 1 637 149 0 106 chr12 128724584 128724725 -15061730 + AluJo SINE Alu 41 166 -146 1219 181 83 103 chr12 128725043 128725106 -15061349 + L1ME1 LINE L1 5762 5825 -341 2275 105 0 0 chr12 128725106 128725410 -15061045 + AluSx SINE Alu 1 304 -8 1219 181 83 103 chr12 128725410 128725517 -15060938 + L1ME1 LINE L1 5825 5933 -233 1878 154 0 10 chr12 128725517 128725822 -15060633 + AluJo SINE Alu 9 310 -2 1219 181 83 103 chr12 128725822 128726058 -15060397 + L1ME1 LINE L1 5933 6161 -5 1983 133 0 3 chr12 128726094 128726395 -15060060 + AluSx SINE Alu 1 300 -12 2121 108 13 0 chr12 128726396 128726702 -15059753 + AluSg SINE Alu 1 310 0 1729 173 10 3 chr12 128726734 128727034 -15059421 + AluSx SINE Alu 1 302 -10 2063 117 3 0 chr12 128727261 128727560 -15058895 + AluSx SINE Alu 13 312 0 3384 132 59 6 chr12 128727571 128728095 -15058360 + LTR39 LTR ERV1 232 783 0 2069 114 3 7 chr12 128728173 128728470 -15057985 - AluSx SINE Alu -16 296 1 1591 162 0 54 chr12 128728688 128729002 -15057453 + AluJo SINE Alu 1 297 -15 2074 128 0 0 chr12 128729010 128729314 -15057141 + AluSx SINE Alu 1 304 -8 1775 153 7 0 chr12 128730105 128730392 -15056063 - AluJo SINE Alu -23 289 1 2256 196 130 26 chr12 128730401 128730932 -15055523 - MLT1E LTR MaLR 0 593 8 21 0 0 0 chr12 128731469 128731490 -15054965 + AT_rich Low_complexity Low_complexity 1 21 0 2211 86 3 0 chr12 128731575 128731867 -15054588 + AluSx SINE Alu 1 293 -19 320 337 58 34 chr12 128731918 128732123 -15054332 + MLT1K LTR MaLR 96 305 -283 1382 153 50 20 chr12 128732154 128732454 -15054001 - MER33 DNA MER1_type -1 323 15 229 182 18 91 chr12 128732422 128732477 -15053978 - MER3 DNA MER1_type -116 93 43 * 339 323 19 24 chr12 128732561 128732739 -15053716 + MLT1K LTR MaLR 432 588 0 327 173 0 0 chr12 128732831 128732883 -15053572 + FLAM SINE Alu 79 130 -3 1016 198 11 0 chr12 128732889 128733071 -15053384 - MER20 DNA MER1_type 0 219 36 605 188 53 23 chr12 128733302 128733435 -15053020 - AluJo SINE Alu -174 138 2 25 0 0 0 chr12 128733436 128733461 -15052994 + AT_rich Low_complexity Low_complexity 1 25 0 548 277 0 8 chr12 128733465 128733595 -15052860 + L1MC/D LINE L1 5525 5653 -2155 403 175 0 0 chr12 128733627 128733705 -15052750 + AluS SINE Alu 223 300 0 3739 103 32 72 chr12 128733926 128734095 -15052360 + LTR24C LTR ERV1 1 175 -460 2521 78 7 0 chr12 128734095 128734404 -15052051 - AluY SINE Alu 0 311 1 2174 110 32 0 chr12 128734404 128734686 -15051769 - AluSc SINE Alu -14 295 5 3739 103 32 72 chr12 128734686 128735177 -15051278 + LTR24C LTR ERV1 173 635 0 722 194 0 8 chr12 128735253 128735387 -15051068 + FLAM_C SINE Alu 1 133 0 2308 94 3 3 chr12 128735452 128735761 -15050694 + AluY SINE Alu 1 309 -2 676 162 0 0 chr12 128735761 128735866 -15050589 - AluJo/FLAM SINE Alu -203 109 5 945 158 0 0 chr12 128736331 128736464 -15049991 + FLAM_C SINE Alu 1 133 0 320 233 47 23 chr12 128736511 128736597 -15049858 - MIR SINE MIR -71 191 104 1865 203 52 44 chr12 128736609 128736695 -15049760 - L1MB7 LINE L1 -60 6124 6040 2242 116 3 3 chr12 128736695 128736996 -15049459 - AluSx SINE Alu -11 301 1 1865 203 52 44 chr12 128736996 128737407 -15049048 - L1MB7 LINE L1 -144 6040 5623 1145 146 45 59 chr12 128737553 128737712 -15048743 - MER20 DNA MER1_type 0 219 62 2400 98 0 0 chr12 128737712 128738017 -15048438 + AluSx SINE Alu 1 305 -7 1145 146 45 59 chr12 128738017 128738077 -15048378 - MER20 DNA MER1_type -157 62 3 295 259 168 24 chr12 128738691 128738954 -15047501 - MLT1H LTR MaLR 0 549 242 7068 67 20 47 chr12 128738988 128740905 -15045550 - SVA Other Other -518 1386 57 1620 0 0 0 chr12 128740905 128741195 -15045260 + (GGGAGA)n Simple_repeat Simple_repeat 1 290 0 610 236 6 24 chr12 128741197 128741362 -15045093 - MLT1H LTR MaLR -344 205 44 1837 155 7 7 chr12 128741365 128741661 -15044794 - AluJb SINE Alu -8 304 9 220 293 0 0 chr12 128741741 128741799 -15044656 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 280 197 0 49 chr12 128741807 128741868 -15044587 + LTR67 LTR ERVL 500 557 0 2121 121 0 3 chr12 128742088 128742377 -15044078 + AluSx SINE Alu 10 297 -15 1997 144 0 3 chr12 128742603 128742922 -15043533 + AluSx SINE Alu 1 318 0 268 269 0 51 chr12 128742978 128743056 -15043399 + MLT1K LTR MaLR 188 261 -327 2089 91 0 4 chr12 128743108 128743371 -15043084 + AluSx SINE Alu 49 310 -2 1779 149 76 3 chr12 128743454 128743743 -15042712 + AluSx SINE Alu 1 310 -2 2282 109 7 0 chr12 128743822 128744124 -15042331 + AluSc SINE Alu 1 304 -5 2140 135 0 3 chr12 128744375 128744678 -15041777 + AluJo SINE Alu 9 310 -2 1099 224 66 0 chr12 128745265 128745524 -15040931 - MLT1C LTR MaLR 0 467 192 1786 176 4 0 chr12 128745546 128745825 -15040630 + AluJo SINE Alu 1 280 -32 244 250 0 0 chr12 128745844 128745900 -15040555 - MLT1C LTR MaLR -353 114 59 860 189 32 11 chr12 128746039 128746224 -15040231 - LTR16A LTR ERVL 0 450 262 1366 151 5 27 chr12 128746227 128746446 -15040009 + AluJb SINE Alu 1 214 -98 552 244 103 6 chr12 128746462 128746618 -15039837 - LTR16A LTR ERVL -264 186 16 692 121 0 0 chr12 128746865 128746977 -15039478 - AluSg/x SINE Alu 0 302 191 268 234 170 0 chr12 128747097 128747191 -15039264 + L2 LINE L2 3188 3297 -16 2138 136 3 0 chr12 128747196 128747497 -15038958 + AluSx SINE Alu 1 302 -10 678 248 0 0 chr12 128747587 128747720 -15038735 + MER5A DNA MER1_type 3 135 -54 825 138 25 50 chr12 128747720 128747847 -15038608 + MLT1A1 LTR MaLR 1 126 -239 1840 118 0 72 chr12 128747847 128748174 -15038281 - AluSx SINE Alu 0 305 1 825 138 25 50 chr12 128748174 128748204 -15038251 + MLT1A1 LTR MaLR 126 155 -210 2192 87 9 72 chr12 128748206 128748539 -15037916 + AluSx SINE Alu 1 312 0 327 113 0 0 chr12 128748539 128748592 -15037863 + (GGGGA)n Simple_repeat Simple_repeat 4 56 0 461 156 0 13 chr12 128748593 128748670 -15037785 + MLT1A1 LTR MaLR 149 224 -141 350 333 45 8 chr12 128748671 128748803 -15037652 + L2 LINE L2 3172 3308 -5 229 243 0 14 chr12 128749170 128749240 -15037215 - L1ME4a LINE L1 -5 6116 6048 34 84 0 0 chr12 128749372 128749455 -15037000 + AT_rich Low_complexity Low_complexity 1 83 0 620 199 30 23 chr12 128749694 128749825 -15036630 - AluJo SINE Alu -178 134 3 209 182 23 23 chr12 128749942 128749986 -15036469 + MIR SINE MIR 198 241 -21 2313 104 0 19 chr12 128750061 128750368 -15036087 + AluSx SINE Alu 1 301 -11 488 259 25 120 chr12 128750485 128750728 -15035727 - L1ME LINE L1 -513 5608 5392 2310 110 3 0 chr12 128750733 128751043 -15035412 - AluSx SINE Alu -1 311 1 211 352 62 23 chr12 128751312 128751440 -15035015 + MIR SINE MIR 84 216 -46 547 194 11 144 chr12 128751755 128751820 -15034635 - MER5B DNA MER1_type 0 178 106 2162 147 0 0 chr12 128751820 128752126 -15034329 + AluSq SINE Alu 1 306 -7 547 194 11 144 chr12 128752126 128752138 -15034317 - MER5B DNA MER1_type -72 106 94 1764 139 50 4 chr12 128752138 128752418 -15034037 + AluJb SINE Alu 1 293 -19 547 194 11 144 chr12 128752418 128752519 -15033936 - MER5B DNA MER1_type -84 94 23 385 291 50 28 chr12 128752520 128752661 -15033794 - MER5A DNA MER1_type -11 178 35 2442 76 13 0 chr12 128752984 128753286 -15033169 - AluSp SINE Alu -7 306 1 1484 131 147 8 chr12 128753464 128753731 -15032724 + AluSg1 SINE Alu 1 301 0 2040 154 0 13 chr12 128753737 128754048 -15032407 + AluJo SINE Alu 1 307 -5 225 264 35 104 chr12 128754402 128754477 -15031978 + MER5A DNA MER1_type 1 63 -126 1783 151 4 0 chr12 128754477 128754735 -15031720 + AluJo SINE Alu 1 259 -53 225 264 35 104 chr12 128754735 128754803 -15031652 + MER5A DNA MER1_type 63 134 -55 1998 147 31 0 chr12 128754804 128755096 -15031359 - AluJb SINE Alu -10 302 2 2183 121 0 0 chr12 128755198 128755487 -15030968 - AluSx SINE Alu -23 289 1 895 114 0 50 chr12 128755493 128755633 -15030822 - FLAM_C SINE Alu 0 133 1 384 200 22 33 chr12 128755633 128755723 -15030732 - ORSL DNA AcHobo -186 89 1 230 170 19 38 chr12 128755810 128755863 -15030592 - Charlie4a DNA MER1_type -32 476 425 2092 115 3 19 chr12 128755871 128755970 -15030485 - AluSx SINE Alu 0 312 213 2886 76 0 0 chr12 128755970 128756325 -15030130 + THE1A LTR MaLR 1 355 0 2092 115 3 19 chr12 128756325 128756538 -15029917 - AluSx SINE Alu -99 213 5 552 161 36 22 chr12 128756538 128756675 -15029780 - Charlie4a DNA MER1_type -60 448 310 1092 203 50 11 chr12 128756703 128756876 -15029579 - Charlie4a DNA MER1_type -1626 335 147 1530 153 0 4 chr12 128756876 128757111 -15029344 + AluJb SINE Alu 71 304 -8 1092 203 50 11 chr12 128757111 128757198 -15029257 - Charlie4a DNA MER1_type -1814 147 65 892 154 11 63 chr12 128757225 128757400 -15029055 - FRAM SINE Alu 0 166 1 208 268 0 0 chr12 128757615 128757656 -15028799 + L2 LINE L2 3145 3185 -87 1931 175 13 0 chr12 128757788 128758096 -15028359 - AluJo SINE Alu 0 312 1 361 269 65 108 chr12 128758221 128758500 -15027955 + L2 LINE L2 2925 3191 -81 912 135 0 0 chr12 128758886 128759012 -15027443 + FLAM_C SINE Alu 1 126 -17 2239 105 6 13 chr12 128759016 128759349 -15027106 + AluSx SINE Alu 1 312 0 940 133 0 0 chr12 128759572 128759700 -15026755 - AluSg/x SINE Alu -18 294 167 2059 139 0 0 chr12 128759700 128759987 -15026468 + AluSx SINE Alu 14 300 -12 1110 145 13 0 chr12 128759988 128760147 -15026308 + AluSg/x SINE Alu 134 294 -16 290 89 71 18 chr12 128760147 128760203 -15026252 - MER20 DNA MER1_type -158 61 3 1674 171 21 11 chr12 128760910 128761197 -15025258 - AluJo SINE Alu -22 290 1 232 270 14 14 chr12 128761199 128761273 -15025182 + MLT1K LTR MaLR 515 588 0 2509 76 0 0 chr12 128761275 128761577 -15024878 - AluSc SINE Alu -7 302 1 224 316 8 51 chr12 128761812 128761929 -15024526 - MIR SINE MIR -54 208 97 2294 95 0 3 chr12 128762407 128762703 -15023752 + AluSq SINE Alu 1 295 -18 2114 142 0 7 chr12 128762769 128763071 -15023384 - AluJb SINE Alu -12 300 1 881 160 53 18 chr12 128763267 128763399 -15023056 - LTR16C LTR ERVL 0 491 350 2286 82 0 4 chr12 128763399 128763678 -15022777 + AluSp SINE Alu 12 289 -24 881 160 53 18 chr12 128763678 128763714 -15022741 - LTR16C LTR ERVL -141 350 317 817 296 26 60 chr12 128763726 128763925 -15022530 + LTR16A LTR ERVL 1 183 -267 2113 106 7 3 chr12 128763925 128764254 -15022201 - AluSx SINE Alu 0 330 1 817 296 26 60 chr12 128764254 128764438 -15022017 + LTR16A LTR ERVL 183 372 -78 1586 144 0 42 chr12 128764466 128764666 -15021789 - AluJb SINE Alu -60 252 64 1594 85 5 0 chr12 128764666 128764867 -15021588 + AluSp SINE Alu 94 295 -18 1586 144 0 42 chr12 128764867 128764929 -15021526 - AluJb SINE Alu -248 64 1 1664 199 10 0 chr12 128765385 128765677 -15020778 + AluJo SINE Alu 1 295 -17 1621 127 54 137 chr12 128765744 128765942 -15020513 + THE1C LTR MaLR 1 149 -226 2061 130 0 3 chr12 128765942 128766227 -15020228 - AluSx SINE Alu -28 284 1 1621 127 54 137 chr12 128766227 128766437 -15020018 + THE1C LTR MaLR 149 375 0 320 221 0 29 chr12 128766457 128766525 -15019930 - L2 LINE L2 0 3313 3248 1531 239 15 39 chr12 128767049 128767195 -15019260 + LTR16C LTR ERVL 96 244 -247 2518 91 0 0 chr12 128767195 128767503 -15018952 + AluSx SINE Alu 1 308 -4 1531 239 15 39 chr12 128767503 128767762 -15018693 + LTR16C LTR ERVL 244 491 0 1957 135 30 10 chr12 128767966 128768288 -15018167 - AluSx SINE Alu 0 312 1 1817 115 4 15 chr12 128768720 128768980 -15017475 - AluSx SINE Alu -1 311 55 1689 173 0 2 chr12 128769006 128769302 -15017153 + L1MB5 LINE L1 5855 6144 -30 2059 137 7 0 chr12 128769302 128769587 -15016868 + AluSx SINE Alu 1 287 -25 358 50 50 0 chr12 128769590 128769650 -15016805 + (TAAAA)n Simple_repeat Simple_repeat 4 66 0 1762 153 10 13 chr12 128769661 128769961 -15016494 + AluJb SINE Alu 1 299 -13 2129 102 3 7 chr12 128769976 128770259 -15016196 + AluSq SINE Alu 6 287 -26 365 165 0 24 chr12 128770273 128770358 -15016097 - Charlie5 DNA MER1_type -2492 120 38 1538 152 144 0 chr12 128770687 128770951 -15015504 + AluJb SINE Alu 1 302 0 2248 93 47 10 chr12 128771467 128771767 -15014688 + AluSp SINE Alu 1 311 -2 2388 88 7 0 chr12 128771858 128772155 -15014300 - AluSx SINE Alu -13 299 1 1433 155 121 11 chr12 128772258 128772522 -15013933 + AluSg1 SINE Alu 1 293 -16 299 127 0 18 chr12 128772839 128772894 -15013561 + (GGGGA)n Simple_repeat Simple_repeat 2 55 0 793 137 0 56 chr12 128772911 128773198 -15013257 + (GGGGA)n Simple_repeat Simple_repeat 1 270 0 2203 110 7 0 chr12 128773287 128773577 -15012878 + AluSx SINE Alu 2 293 -19 1101 162 0 11 chr12 128773577 128773756 -15012699 + AluSq SINE Alu 134 310 -3 2158 128 0 13 chr12 128773758 128773892 -15012563 + AluSg SINE Alu 1 135 -175 2476 74 0 10 chr12 128773892 128774201 -15012254 + AluY SINE Alu 1 306 -5 2158 128 0 13 chr12 128774201 128774372 -15012083 + AluSg SINE Alu 135 302 -8 855 119 182 0 chr12 128774372 128774531 -15011924 - MSTC LTR MaLR -237 191 4 277 167 64 36 chr12 128774546 128774639 -15011816 + MLT1J1 LTR MaLR 347 425 -21 377 360 13 13 chr12 128774901 128775054 -15011401 + L2 LINE L2 3143 3295 -18 186 191 0 0 chr12 128775056 128775103 -15011352 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2016 131 0 0 chr12 128775558 128775871 -15010584 + AluSx SINE Alu 1 313 0 3322 132 48 56 chr12 128775885 128775921 -15010534 + LTR26 LTR ERV1 3 38 -565 1741 174 32 0 chr12 128775921 128776202 -15010253 + AluJo SINE Alu 1 290 -22 2327 93 0 10 chr12 128776212 128776514 -15009941 + AluY SINE Alu 1 299 -12 3322 132 48 56 chr12 128776514 128776675 -15009780 + LTR26 LTR ERV1 47 208 -395 2365 104 0 0 chr12 128776675 128776974 -15009481 + AluSx SINE Alu 1 299 -13 3322 132 48 56 chr12 128776974 128777370 -15009085 + LTR26 LTR ERV1 208 603 0 2308 111 10 0 chr12 128777745 128778051 -15008404 - AluSp SINE Alu -2 311 3 1704 183 34 26 chr12 128778051 128778429 -15008026 + MLT1D LTR MaLR 125 505 0 4108 142 43 25 chr12 128778466 128779180 -15007275 - LTR8A LTR ERV1 0 727 1 1109 330 48 31 chr12 128779219 128779757 -15006698 - ERVL LTR ERVL -513 5251 4700 2111 137 0 0 chr12 128779757 128780049 -15006406 + AluSx SINE Alu 1 292 -20 1109 330 48 31 chr12 128780049 128780114 -15006341 - ERVL LTR ERVL -1064 4700 4638 598 167 47 60 chr12 128780114 128780258 -15006197 - MER74A LTR ERVL -7 551 410 233 121 0 0 chr12 128780258 128780291 -15006164 + MER41C LTR ERV1 1 33 -521 2296 89 7 3 chr12 128780291 128780583 -15005872 - AluSx SINE Alu -15 297 5 722 282 79 59 chr12 128781025 128781183 -15005272 - ERVL LTR ERVL -879 4606 4453 2387 103 33 41 chr12 128781183 128781336 -15005119 + THE1B LTR MaLR 1 154 -210 2320 96 0 28 chr12 128781336 128781658 -15004797 - AluSp SINE Alu 0 313 1 2311 105 3 0 chr12 128781658 128781954 -15004501 - AluSx SINE Alu -15 297 1 2387 103 33 41 chr12 128781954 128782166 -15004289 + THE1B LTR MaLR 152 364 0 722 282 79 59 chr12 128782166 128782500 -15003955 - ERVL LTR ERVL -1032 4453 4104 196 245 20 0 chr12 128782570 128782619 -15003836 + L2 LINE L2 3256 3305 -8 203 261 92 0 chr12 128782622 128782687 -15003768 - L2 LINE L2 0 3313 3243 1930 121 7 4 chr12 128782694 128782966 -15003489 + AluSx SINE Alu 37 309 -3 195 114 0 0 chr12 128782995 128783030 -15003425 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 243 0 0 0 chr12 128783198 128783225 -15003230 + (TC)n Simple_repeat Simple_repeat 2 28 0 2025 151 3 16 chr12 128783225 128783536 -15002919 - AluJo SINE Alu -5 307 1 2323 122 0 0 chr12 128783806 128784110 -15002345 - AluSx SINE Alu -8 304 1 1309 258 28 40 chr12 128784318 128784717 -15001738 - LTR16A LTR ERVL -38 412 19 2252 169 47 67 chr12 128784821 128784887 -15001568 - L1MB2 LINE L1 0 6171 6105 1621 118 161 0 chr12 128784887 128785142 -15001313 - AluSx SINE Alu -6 296 1 2114 135 0 0 chr12 128785150 128785438 -15001017 - AluJo SINE Alu -24 288 1 2252 169 47 67 chr12 128785438 128785764 -15000691 - L1MB2 LINE L1 -73 6098 5781 477 0 0 0 chr12 128785764 128785817 -15000638 + (TA)n Simple_repeat Simple_repeat 1 53 0 2252 169 47 67 chr12 128785817 128785951 -15000504 - L1MB2 LINE L1 -390 5781 5646 805 175 0 0 chr12 128786087 128786213 -15000242 + FLAM_C SINE Alu 1 126 -7 1908 155 0 3 chr12 128786483 128786791 -14999664 + AluJb SINE Alu 1 307 0 2342 86 0 0 chr12 128786791 128787081 -14999374 + AluSc SINE Alu 2 291 -18 2341 116 0 0 chr12 128787305 128787615 -14998840 - AluSx SINE Alu 0 312 3 1109 151 159 44 chr12 128788077 128788329 -14998126 - AluJo SINE Alu -21 291 11 1254 191 0 5 chr12 128788360 128788570 -14997885 - AluJb SINE Alu -20 292 84 868 119 8 22 chr12 128789332 128789497 -14996958 + AluJb SINE Alu 153 315 0 2062 157 0 0 chr12 128790099 128790404 -14996051 + AluJb SINE Alu 1 305 -7 738 116 0 6 chr12 128790492 128790743 -14995712 + AluSx SINE Alu 1 299 -11 2495 90 0 0 chr12 128791238 128791549 -14994906 - AluSx SINE Alu -1 311 1 2277 96 7 0 chr12 128792001 128792292 -14994163 - AluSx SINE Alu -17 295 3 994 156 7 148 chr12 128792346 128792616 -14993839 + AluJo SINE Alu 1 232 -80 450 0 0 0 chr12 128792643 128792693 -14993762 + (CA)n Simple_repeat Simple_repeat 1 50 0 2381 81 3 7 chr12 128792881 128793176 -14993279 + AluSg SINE Alu 1 294 -16 966 174 0 0 chr12 128793191 128793346 -14993109 + FRAM SINE Alu 12 166 -10 2827 133 37 44 chr12 128793347 128793472 -14992983 + L1MB3 LINE L1 5606 5730 -453 2416 70 3 7 chr12 128793472 128793773 -14992682 + AluY SINE Alu 1 300 -11 2827 133 37 44 chr12 128793773 128794075 -14992380 + L1MB3 LINE L1 5730 6031 -152 2480 94 0 0 chr12 128794075 128794383 -14992072 - AluSq SINE Alu -5 308 1 2827 133 37 44 chr12 128794383 128794496 -14991959 + L1MB3 LINE L1 6031 6143 -40 2068 137 3 3 chr12 128794496 128794789 -14991666 + AluSx SINE Alu 1 293 -19 2446 80 0 7 chr12 128794793 128795092 -14991363 + AluSg SINE Alu 1 297 -13 573 88 0 0 chr12 128795099 128795179 -14991276 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 200 264 0 19 chr12 128795184 128795237 -14991218 + GA-rich Low_complexity Low_complexity 1 52 0 2513 74 3 6 chr12 128795237 128795548 -14990907 + AluSg SINE Alu 1 310 0 2168 96 3 23 chr12 128795697 128795998 -14990457 - AluSg SINE Alu -15 295 1 859 181 7 7 chr12 128796887 128797057 -14989398 - AluJb SINE Alu 0 308 139 1616 155 3 68 chr12 128797555 128797771 -14988684 - AluJb SINE Alu 0 312 123 2129 124 7 0 chr12 128797771 128798080 -14988375 + AluSx SINE Alu 1 311 0 1616 155 3 68 chr12 128798080 128798196 -14988259 - AluJb SINE Alu -189 123 1 1034 134 73 22 chr12 128798205 128798384 -14988071 - AluJb SINE Alu -3 309 122 1191 191 5 5 chr12 128798692 128798901 -14987554 + AluJb SINE Alu 84 292 -20 189 311 33 0 chr12 128798902 128798963 -14987492 - L2 LINE L2 -22 3291 3229 398 264 27 9 chr12 128798980 128799090 -14987365 - MIR SINE MIR -144 118 7 2128 94 59 0 chr12 128799139 128799425 -14987030 - AluY SINE Alu -8 303 1 2209 115 7 0 chr12 128799485 128799780 -14986675 - AluSx SINE Alu -12 300 4 1796 179 0 7 chr12 128799952 128800243 -14986212 + AluJo SINE Alu 1 289 -23 2399 90 0 3 chr12 128800253 128800552 -14985903 + AluSg SINE Alu 1 298 -12 2442 102 0 0 chr12 128800552 128800865 -14985590 + AluSq SINE Alu 1 313 0 254 132 19 0 chr12 128800868 128800921 -14985534 + (TA)n Simple_repeat Simple_repeat 2 55 0 1912 161 0 3 chr12 128801917 128802238 -14984217 - AluJb SINE Alu 0 320 1 1921 154 17 3 chr12 128802256 128802554 -14983901 - AluSx SINE Alu -10 302 1 956 148 76 99 chr12 128802575 128802774 -14983681 - MER20 DNA MER1_type -1 218 23 2106 136 3 0 chr12 128802774 128803068 -14983387 + AluSx SINE Alu 1 295 -17 956 148 76 99 chr12 128803068 128803091 -14983364 - MER20 DNA MER1_type -196 23 1 247 270 20 104 chr12 128803110 128803233 -14983222 - MIR3 SINE MIR -44 164 48 558 175 91 21 chr12 128803234 128803377 -14983078 - AluJo SINE Alu -5 307 155 751 136 0 17 chr12 128803378 128803496 -14982959 - AluJo SINE Alu -186 116 1 1757 160 14 14 chr12 128803578 128803881 -14982574 - AluJo SINE Alu 0 303 1 593 249 97 0 chr12 128803894 128804059 -14982396 - MIR SINE MIR -46 216 36 217 171 0 86 chr12 128805124 128805194 -14981261 + MIR SINE MIR 159 222 -40 364 284 23 0 chr12 128805372 128805460 -14980995 + Charlie1a DNA MER1_type 1 90 -1365 5094 162 104 51 chr12 128805497 128806318 -14980137 + Charlie1a DNA MER1_type 73 978 -1783 2226 101 3 14 chr12 128806318 128806615 -14979840 + AluSx SINE Alu 3 296 -16 5094 162 104 51 chr12 128806615 128806981 -14979474 + Charlie1a DNA MER1_type 978 1323 -132 2193 123 0 0 chr12 128806982 128807274 -14979181 - AluSx SINE Alu -20 292 1 279 159 0 0 chr12 128807275 128807319 -14979136 + Charlie1a DNA MER1_type 1411 1454 -1 1832 164 7 10 chr12 128807594 128807887 -14978568 - AluJb SINE Alu -10 302 11 737 144 0 48 chr12 128807894 128807922 -14978533 - FLAM_C SINE Alu -192 120 92 4657 94 6 2 chr12 128807922 128808552 -14977903 - LTR10E LTR ERV1 0 633 1 737 144 0 48 chr12 128808552 128808648 -14977807 - FLAM_C SINE Alu -220 92 2 534 298 68 20 chr12 128809355 128809603 -14976852 + MIR SINE MIR 3 262 0 276 231 0 0 chr12 128810465 128810530 -14975925 + (CCG)n Simple_repeat Simple_repeat 3 67 0 228 135 0 0 chr12 128810647 128810684 -14975771 + (CAG)n Simple_repeat Simple_repeat 3 39 0 217 222 0 56 chr12 128810852 128811056 -14975399 + G-rich Low_complexity Low_complexity 1 192 0 309 191 22 45 chr12 128813187 128813276 -14973179 + L1MB2 LINE L1 6029 6115 -56 25 31 0 0 chr12 128813351 128813383 -14973072 + AT_rich Low_complexity Low_complexity 1 32 0 1508 161 64 14 chr12 128813595 128813875 -14972580 - AluJo SINE Alu -18 294 1 2266 65 0 35 chr12 128814163 128814453 -14972002 - AluY SINE Alu -31 280 1 2256 97 10 7 chr12 128814806 128815106 -14971349 - AluSx SINE Alu -11 301 1 2322 97 0 0 chr12 128815688 128815978 -14970477 - AluSg SINE Alu -20 290 1 1558 175 69 12 chr12 128815978 128816298 -14970157 - L1MC3 LINE L1 -9 7776 7439 2639 44 0 0 chr12 128816895 128817192 -14969263 + AluY SINE Alu 1 297 -14 877 281 91 34 chr12 128817305 128817743 -14968712 - MARNA DNA Mariner -23 563 101 216 135 0 0 chr12 128817860 128817897 -14968558 + (CA)n Simple_repeat Simple_repeat 2 38 0 2339 78 7 0 chr12 128818141 128818436 -14968019 - AluY SINE Alu -14 297 1 494 200 75 56 chr12 128818519 128818679 -14967776 + L2 LINE L2 3147 3309 -4 379 289 79 13 chr12 128818799 128818951 -14967504 + MIR3 SINE MIR 37 198 -10 1800 149 0 0 chr12 128819028 128819290 -14967165 + AluSg SINE Alu 5 266 -44 419 115 0 0 chr12 128819290 128819351 -14967104 + Alu SINE Alu 234 294 -16 1632 168 47 20 chr12 128819977 128820274 -14966181 + AluJo SINE Alu 1 305 -7 338 273 133 0 chr12 128820393 128820543 -14965912 + MIR3 SINE MIR 30 199 -9 229 264 19 0 chr12 128821301 128821354 -14965101 + GA-rich Low_complexity Low_complexity 1 54 0 297 242 180 23 chr12 128821924 128822052 -14964403 + MIR SINE MIR 50 197 -65 2549 81 0 0 chr12 128822429 128822736 -14963719 - AluY SINE Alu -4 307 1 881 99 16 120 chr12 128822891 128822958 -14963497 - L1MB7 LINE L1 -7 6177 6105 1395 174 91 33 chr12 128822958 128823233 -14963222 + AluJo SINE Alu 1 291 -21 881 99 16 120 chr12 128823233 128823356 -14963099 - L1MB7 LINE L1 -79 6105 6007 1004 149 11 17 chr12 128823359 128823533 -14962922 - MLT1B LTR MaLR -215 175 3 372 280 200 50 chr12 128823860 128824064 -14962391 - L2 LINE L2 -7 3306 3041 2189 116 0 7 chr12 128824064 128824367 -14962088 + AluSx SINE Alu 1 301 -11 372 280 200 50 chr12 128824367 128824462 -14961993 - L2 LINE L2 -272 3041 2962 341 207 184 11 chr12 128824477 128824564 -14961891 + L2 LINE L2 3192 3293 -20 2260 105 0 7 chr12 128826008 128826314 -14960141 - AluSq SINE Alu -9 304 1 672 293 75 41 chr12 128826348 128826550 -14959905 - L1ME4a LINE L1 -4 6117 5923 1920 133 23 29 chr12 128826550 128826859 -14959596 - AluSx SINE Alu -5 307 1 672 293 75 41 chr12 128826859 128827215 -14959240 - L1ME3A LINE L1 -198 5923 5540 398 272 17 112 chr12 128827233 128827520 -14958935 + L1ME3A LINE L1 5896 6155 -15 225 0 0 0 chr12 128827531 128827556 -14958899 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1117 276 109 47 chr12 128827556 128828459 -14957996 - L2 LINE L2 -16 3297 2310 2061 154 3 3 chr12 128829337 128829649 -14956806 - AluJb SINE Alu 0 312 1 228 213 49 49 chr12 128829657 128829718 -14956737 - MIR SINE MIR -60 148 88 2357 92 0 0 chr12 128830184 128830476 -14955979 - AluSc SINE Alu -17 292 1 868 248 190 3 chr12 128832270 128832558 -14953897 - MLT1J1 LTR MaLR -122 328 1 193 262 229 0 chr12 128832579 128832640 -14953815 + MIR3 SINE MIR 114 188 -20 383 280 10 0 chr12 128832878 128832978 -14953477 - MLT1J1 LTR MaLR 0 446 346 438 282 87 8 chr12 128833003 128833161 -14953294 + MIR3 SINE MIR 3 167 -41 183 80 0 0 chr12 128833961 128833986 -14952469 + (GGGAA)n Simple_repeat Simple_repeat 4 28 0 2285 103 0 10 chr12 128834219 128834519 -14951936 + AluSx SINE Alu 1 297 -15 396 0 0 0 chr12 128834630 128834674 -14951781 + (TG)n Simple_repeat Simple_repeat 2 45 0 2241 97 0 0 chr12 128834674 128834952 -14951503 - AluSx SINE Alu -34 278 1 257 256 49 37 chr12 128835160 128835242 -14951213 - MIR3 SINE MIR -49 159 77 2250 98 3 0 chr12 128835607 128835894 -14950561 + AluSc SINE Alu 6 293 -16 800 115 39 23 chr12 128835907 128836037 -14950418 + FLAM_C SINE Alu 1 132 -1 3028 204 40 9 chr12 128837080 128837625 -14948830 - L1MB7 LINE L1 -10 6174 5604 1822 147 70 0 chr12 128837625 128837910 -14948545 - AluJo SINE Alu -7 305 1 3028 204 40 9 chr12 128837910 128838010 -14948445 - L1MB7 LINE L1 -580 5604 5509 2343 66 0 14 chr12 128838071 128838386 -14948069 - AluY SINE Alu 0 311 1 238 229 236 36 chr12 128838597 128838684 -14947771 + MIR SINE MIR 95 163 -99 1505 170 4 12 chr12 128838684 128838937 -14947518 + AluJo SINE Alu 47 297 -15 238 229 236 36 chr12 128838937 128838989 -14947466 + MIR SINE MIR 163 262 0 822 194 41 18 chr12 128839282 128839452 -14947003 - MER5B DNA MER1_type -2 176 3 234 245 113 113 chr12 128839741 128839945 -14946510 + MIR SINE MIR 4 207 -55 2645 46 0 0 chr12 128839954 128840257 -14946198 + AluYa5 SINE Alu 1 303 -8 1265 160 0 0 chr12 128840276 128840464 -14945991 + 7SLRNA srpRNA srpRNA 124 311 -9 685 154 0 70 chr12 128840796 128840939 -14945516 - FLAM_A SINE Alu 0 133 1 815 193 72 141 chr12 128841220 128841525 -14944930 + L1MC4 LINE L1 6703 6986 -1056 491 268 107 46 chr12 128841654 128842021 -14944434 + L1MC4 LINE L1 7000 7399 -643 344 217 14 0 chr12 128842121 128842190 -14944265 + MER58C DNA MER1_type 44 113 -102 1959 136 3 3 chr12 128842199 128842485 -14943970 + AluSx SINE Alu 8 293 -19 2507 84 0 0 chr12 128842495 128842806 -14943649 + AluSx SINE Alu 1 311 -1 2213 121 0 16 chr12 128842808 128843122 -14943333 + AluSx SINE Alu 1 309 -3 298 122 40 0 chr12 128843126 128843200 -14943255 + A-rich Low_complexity Low_complexity 2 78 0 351 256 26 60 chr12 128843210 128843327 -14943128 + MER58C DNA MER1_type 103 215 0 771 165 0 0 chr12 128843474 128843595 -14942860 + FLAM_C SINE Alu 3 123 -20 324 111 61 0 chr12 128843595 128843694 -14942761 + (TA)n Simple_repeat Simple_repeat 2 106 0 238 207 0 17 chr12 128843694 128843752 -14942703 + L1MC4 LINE L1 7610 7666 -376 3380 241 105 26 chr12 128843779 128844304 -14942151 + L1MEc LINE L1 36 518 -5697 1201 116 156 0 chr12 128844304 128844503 -14941952 + MER30 DNA MER1_type 1 230 0 3380 241 105 26 chr12 128844503 128844697 -14941758 + L1MEc LINE L1 518 695 -5520 2169 124 3 7 chr12 128844697 128845004 -14941451 + AluSx SINE Alu 1 306 -6 3380 241 105 26 chr12 128845004 128845188 -14941267 + L1MEc LINE L1 695 863 -5352 2094 124 0 3 chr12 128845188 128845490 -14940965 + AluSx SINE Alu 1 301 0 3380 241 105 26 chr12 128845490 128845788 -14940667 + L1MEc LINE L1 863 1353 -4862 22 0 0 0 chr12 128845848 128845870 -14940585 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr12 128845872 128845897 -14940558 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1329 164 139 8 chr12 128845899 128846014 -14940441 - AluSg1 SINE Alu -33 276 177 234 0 0 0 chr12 128846014 128846040 -14940415 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1329 164 139 8 chr12 128846040 128846168 -14940287 - AluSg1 SINE Alu -132 177 1 2489 52 7 13 chr12 128846232 128846540 -14939915 - AluY SINE Alu -5 306 1 308 250 0 0 chr12 128846540 128846608 -14939847 + LTR41 LTR ERVL 109 176 -597 314 203 27 0 chr12 128846818 128846892 -14939563 + L1MA10 LINE L1 6258 6333 -1 2242 126 0 0 chr12 128847025 128847327 -14939128 - AluSx SINE Alu -9 303 2 2187 104 27 3 chr12 128848214 128848512 -14937943 - AluSg SINE Alu -5 305 1 309 216 68 0 chr12 128848691 128848765 -14937690 - MIR SINE MIR -96 166 88 2059 126 3 10 chr12 128849583 128849892 -14936563 + AluSx SINE Alu 1 307 -5 708 190 0 63 chr12 128849917 128850059 -14936396 + FLAM_A SINE Alu 1 133 0 422 257 92 9 chr12 128850742 128850851 -14935604 - MER103 DNA DNA -48 118 1 1726 121 62 7 chr12 128850864 128851137 -14935318 - AluSq SINE Alu -25 288 1 1029 166 55 9 chr12 128851193 128851410 -14935045 - L1MA9 LINE L1 0 6312 6086 269 249 94 78 chr12 128851717 128851862 -14934593 - MIR SINE MIR -61 147 32 2320 71 0 4 chr12 128852394 128852674 -14933781 - AluY SINE Alu -12 299 21 2068 130 7 7 chr12 128853000 128853292 -14933163 + AluJo SINE Alu 1 292 -20 24 0 0 0 chr12 128853512 128853536 -14932919 + AT_rich Low_complexity Low_complexity 1 24 0 359 289 58 31 chr12 128853775 128853936 -14932519 - L1ME4a LINE L1 -11 6110 5940 2262 94 7 7 chr12 128853936 128854235 -14932220 - AluSc SINE Alu -10 299 1 359 289 58 31 chr12 128854235 128854298 -14932157 - L1ME4a LINE L1 -181 5940 5880 2358 63 0 47 chr12 128854558 128854877 -14931578 - AluY SINE Alu -7 304 1 1185 220 48 17 chr12 128855786 128856077 -14930378 - MLT1E1 LTR MaLR -66 588 289 2200 134 0 0 chr12 128856244 128856550 -14929905 + AluSx SINE Alu 1 306 -6 520 245 80 51 chr12 128856551 128856788 -14929667 - MIR SINE MIR -16 246 3 877 205 113 135 chr12 128856869 128857426 -14929029 - L1ME3A LINE L1 -30 6140 5596 368 231 0 83 chr12 128857404 128857512 -14928943 - L1ME4a LINE L1 -431 5690 5592 * 2335 108 0 0 chr12 128857784 128858081 -14928374 + AluSx SINE Alu 1 297 -15 255 279 0 0 chr12 128858319 128858380 -14928075 + L2 LINE L2 3207 3267 -5 441 235 85 19 chr12 128859933 128860110 -14926345 + MIR SINE MIR 75 256 -6 2374 94 3 0 chr12 128860206 128860514 -14925941 + AluSx SINE Alu 1 309 -3 2578 78 0 0 chr12 128860548 128860856 -14925599 + AluSg SINE Alu 1 308 -2 1938 136 40 3 chr12 128861281 128861582 -14924873 - AluSx SINE Alu 0 312 1 1780 163 43 7 chr12 128861605 128861906 -14924549 - AluJb SINE Alu 0 312 1 1976 139 10 3 chr12 128861942 128862237 -14924218 - AluSx SINE Alu -15 297 1 1253 225 53 137 chr12 128862633 128863713 -14922742 - L2 LINE L2 -30 3283 2293 2425 84 0 0 chr12 128863713 128864010 -14922445 + AluSx SINE Alu 1 297 -15 1253 225 53 137 chr12 128864010 128864063 -14922392 - L2 LINE L2 -1020 2293 2237 555 329 52 5 chr12 128864188 128864401 -14922054 + MIR SINE MIR 25 247 -15 253 375 102 25 chr12 128864982 128865305 -14921150 - L2 LINE L2 -1 3271 2924 3244 22 0 0 chr12 128865797 128866168 -14920287 - L1P LINE L1 -1193 4953 4583 7892 19 5 0 chr12 128866168 128867118 -14919337 + L1PA3 LINE L1 5197 6150 -5 628 229 64 6 chr12 128867629 128867802 -14918653 - MIR SINE MIR -24 238 57 269 219 62 0 chr12 128868643 128868707 -14917748 + MIR3 SINE MIR 118 185 -23 409 259 29 7 chr12 128868804 128868943 -14917512 - MIR SINE MIR -43 219 78 23 0 0 0 chr12 128869167 128869190 -14917265 + AT_rich Low_complexity Low_complexity 1 23 0 593 191 0 9 chr12 128869375 128869480 -14916975 - FAM SINE Alu -15 170 67 411 216 52 0 chr12 128869620 128869717 -14916738 + U13 snRNA snRNA 1 102 -2 340 199 110 88 chr12 128869792 128869928 -14916527 + MIR3 SINE MIR 68 206 -2 203 275 29 14 chr12 128869943 128870012 -14916443 + L2 LINE L2 3234 3303 -10 213 333 67 0 chr12 128870178 128870298 -14916157 - L2 LINE L2 -41 3272 3145 474 270 119 18 chr12 128870685 128871055 -14915400 - L1MEd LINE L1 -4864 1255 950 1478 187 63 44 chr12 128871058 128871445 -14915010 - L1ME LINE L1 -572 5592 5201 2644 61 0 3 chr12 128871445 128871757 -14914698 - AluY SINE Alu 0 311 1 1478 187 63 44 chr12 128871757 128871811 -14914644 - L1ME LINE L1 -963 5201 5149 1778 160 38 3 chr12 128871834 128872122 -14914333 - AluSx SINE Alu -14 298 1 374 264 71 89 chr12 128872122 128872222 -14914233 - L1MEd LINE L1 -5164 955 855 2144 108 0 51 chr12 128872222 128872536 -14913919 - AluSg SINE Alu -12 298 1 374 264 71 89 chr12 128872536 128872829 -14913626 - L1MEd LINE L1 -5264 855 569 * 3842 168 85 60 chr12 128872828 128873118 -14913337 - L1MC4a LINE L1 -5 7807 7526 2066 90 0 11 chr12 128873118 128873415 -14913040 - AluSg SINE Alu 0 311 18 3842 168 85 60 chr12 128873415 128873428 -14913027 - L1MC4a LINE L1 -286 7526 7515 201 39 0 0 chr12 128873428 128873454 -14913001 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 3842 168 85 60 chr12 128873454 128873961 -14912494 - L1MC4a LINE L1 -297 7515 7022 2210 110 3 26 chr12 128873961 128874270 -14912185 - AluSx SINE Alu -10 302 1 2105 98 17 17 chr12 128874273 128874568 -14911887 - AluSp SINE Alu -13 300 6 3842 168 85 60 chr12 128874568 128875041 -14911414 - L1MC4a LINE L1 -791 7021 6597 1271 111 0 18 chr12 128875081 128875252 -14911203 + AluSq SINE Alu 1 168 -145 2151 100 0 17 chr12 128875265 128875566 -14910889 - AluSx SINE Alu -14 298 3 306 213 129 32 chr12 128875681 128875787 -14910668 + L1ME4a LINE L1 5714 5841 -280 2031 126 7 11 chr12 128875787 128876073 -14910382 + AluSx SINE Alu 1 285 -27 306 213 129 32 chr12 128876073 128876121 -14910334 + L1ME4a LINE L1 5841 5883 -238 718 271 95 42 chr12 128876939 128877275 -14909180 + L1ME LINE L1 5468 5793 -328 2511 62 7 0 chr12 128877629 128877921 -14908534 + AluSg SINE Alu 1 294 -16 817 90 99 0 chr12 128878383 128878494 -14907961 - AluJb SINE Alu -190 122 1 2528 64 0 10 chr12 128879009 128879323 -14907132 - AluY SINE Alu 0 311 1 2385 94 0 0 chr12 128879773 128880081 -14906374 - AluSx SINE Alu -4 308 1 2150 115 3 37 chr12 128880267 128880452 -14906003 - AluSx SINE Alu 0 312 122 207 0 0 0 chr12 128880452 128880475 -14905980 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2242 90 0 21 chr12 128880475 128880764 -14905691 - AluSg SINE Alu -27 283 1 2150 115 3 37 chr12 128880764 128880900 -14905555 - AluSx SINE Alu -188 124 1 1930 143 0 20 chr12 128880902 128881203 -14905252 - AluJb SINE Alu -17 295 1 252 245 112 10 chr12 128881221 128881366 -14905089 + MIR SINE MIR 58 252 -10 342 318 9 0 chr12 128883367 128883477 -14902978 + MIR SINE MIR 126 236 -26 207 437 0 0 chr12 128887314 128887401 -14899054 - MIR SINE MIR -71 137 51 241 354 42 0 chr12 128888496 128888592 -14897863 + MIR SINE MIR 33 132 -76 1988 107 36 0 chr12 128889724 128890004 -14896451 + AluSx SINE Alu 1 290 -22 199 302 104 0 chr12 128890214 128890310 -14896145 + MIR3 SINE MIR 100 205 -3 258 299 115 69 chr12 128890402 128890619 -14895836 + L3b LINE CR1 1258 1484 -99 188 267 238 9 chr12 128890656 128890761 -14895694 + MIR SINE MIR 20 148 -60 1544 239 157 16 chr12 128890876 128891520 -14894935 - L1ME3A LINE L1 -3 6167 5433 1395 217 68 68 chr12 128891549 128891922 -14894533 - L1MC5 LINE L1 -49 7912 7540 2251 87 7 0 chr12 128891922 128892220 -14894235 - AluSq SINE Alu -13 300 1 1395 217 68 68 chr12 128892220 128892325 -14894130 - L1MC5 LINE L1 -421 7540 7436 2169 111 3 0 chr12 128892325 128892632 -14893823 - AluSx SINE Alu -4 308 1 1395 217 68 68 chr12 128892632 128892765 -14893690 - L1MC5 LINE L1 -524 7437 7300 1930 136 3 14 chr12 128894069 128894364 -14892091 - AluSx SINE Alu -20 292 1 2295 60 26 0 chr12 128895099 128895401 -14891054 - AluY SINE Alu -1 310 1 311 390 12 0 chr12 128895418 128895587 -14890868 + CT-rich Low_complexity Low_complexity 1 171 0 1760 167 37 0 chr12 128896576 128896875 -14889580 - AluJb SINE Alu -2 310 1 2043 129 0 0 chr12 128897067 128897354 -14889101 + AluSx SINE Alu 1 287 -25 228 278 87 43 chr12 128898071 128898186 -14888269 - L2 LINE L2 -16 3256 3137 342 317 125 54 chr12 128899157 128899548 -14886907 + L2 LINE L2 2852 3270 -2 396 281 41 8 chr12 128900832 128900953 -14885502 - LTR67 LTR ERVL -2 555 431 258 267 27 0 chr12 128901179 128901254 -14885201 - LTR67 LTR ERVL -479 78 2 205 349 48 8 chr12 128901419 128901545 -14884910 - L2 LINE L2 -849 2465 2335 303 281 81 81 chr12 128902253 128902332 -14884123 - L1ME4a LINE L1 -13 6108 6030 264 59 0 0 chr12 128902332 128902366 -14884089 + (CCCCCA)n Simple_repeat Simple_repeat 1 34 0 303 281 81 81 chr12 128902366 128902521 -14883934 - L1ME4a LINE L1 -90 6031 5874 2268 89 10 0 chr12 128902535 128902839 -14883616 - AluSq SINE Alu -6 307 1 1105 259 89 21 chr12 128902896 128903449 -14883006 - L1MC5 LINE L1 -26 7935 7342 1778 169 0 3 chr12 128903449 128903744 -14882711 - AluJb SINE Alu -18 294 1 1870 136 48 0 chr12 128903765 128904059 -14882396 - AluJb SINE Alu -4 308 1 189 74 0 0 chr12 128904062 128904089 -14882366 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1743 106 0 0 chr12 128904118 128904353 -14882102 - AluSx SINE Alu -77 235 1 1541 176 44 20 chr12 128904444 128904740 -14881715 - AluJb SINE Alu -9 303 1 1880 124 25 0 chr12 128904820 128905143 -14881312 - AluSx SINE Alu 0 330 1 2256 101 3 0 chr12 128905184 128905492 -14880963 - AluY SINE Alu -2 309 1 325 274 131 17 chr12 128905498 128905673 -14880782 - MIR SINE MIR -66 196 2 2176 100 0 7 chr12 128905797 128906098 -14880357 + AluSx SINE Alu 1 299 -13 1202 152 193 29 chr12 128906358 128906602 -14879853 + AluSg SINE Alu 5 288 -12 1674 142 55 18 chr12 128906737 128907012 -14879443 + AluJo SINE Alu 20 304 -8 180 0 0 0 chr12 128907189 128907209 -14879246 + (A)n Simple_repeat Simple_repeat 1 20 0 377 248 124 43 chr12 128907587 128907748 -14878707 + MER5B DNA MER1_type 4 177 -1 22 0 0 0 chr12 128908525 128908547 -14877908 + GC_rich Low_complexity Low_complexity 1 22 0 398 257 203 51 chr12 128908989 128909121 -14877334 - L1ME4a LINE L1 -17 6104 5993 2170 76 3 13 chr12 128909121 128909422 -14877033 - AluSp SINE Alu -14 299 2 398 257 203 51 chr12 128909422 128909526 -14876929 - L1ME4a LINE L1 -128 5993 5832 2283 90 0 13 chr12 128909535 128909847 -14876608 - AluSx SINE Alu -4 308 1 2287 68 7 0 chr12 128909860 128910154 -14876301 - AluY SINE Alu -15 296 1 276 30 0 0 chr12 128910462 128910495 -14875960 + (TG)n Simple_repeat Simple_repeat 1 33 0 230 0 33 0 chr12 128910566 128910596 -14875859 + (TG)n Simple_repeat Simple_repeat 1 31 0 2084 87 14 0 chr12 128910596 128910872 -14875583 - AluSp SINE Alu -33 280 1 208 276 58 35 chr12 128910876 128910963 -14875492 + MIR SINE MIR 118 206 -56 1178 166 0 28 chr12 128918748 128918965 -14867490 + AluJb SINE Alu 95 305 -7 2456 59 0 3 chr12 128919068 128919374 -14867081 - AluY SINE Alu -6 305 1 229 103 26 0 chr12 128919471 128919510 -14866945 - MIR SINE MIR -85 123 84 569 220 135 24 chr12 128919672 128919902 -14866553 + MIR SINE MIR 3 261 -1 195 280 40 0 chr12 128923357 128923407 -14863048 + MIR SINE MIR 104 155 -107 215 146 42 0 chr12 128924271 128924319 -14862136 - MIR SINE MIR -133 129 80 289 321 124 29 chr12 128925249 128925458 -14860997 - L2 LINE L2 -37 3276 3048 260 286 125 0 chr12 128925493 128925605 -14860850 + MER112 DNA MER1_type 135 260 0 292 294 76 61 chr12 128925679 128925854 -14860601 - L2 LINE L2 -479 2835 2655 1710 115 48 11 chr12 128925854 128926124 -14860331 - AluJb SINE Alu -32 280 1 292 294 76 61 chr12 128926124 128926145 -14860310 - L2 LINE L2 -659 2655 2636 227 337 96 45 chr12 128926238 128926437 -14860018 - L2 LINE L2 -120 3152 2944 1083 181 22 58 chr12 128926651 128926832 -14859623 + MER20 DNA MER1_type 1 174 -45 2359 60 20 0 chr12 128926832 128927131 -14859324 + AluY SINE Alu 1 305 -6 1083 181 22 58 chr12 128927131 128927175 -14859280 + MER20 DNA MER1_type 174 218 -1 447 288 98 0 chr12 128927496 128927659 -14858796 - MIR SINE MIR -3 259 81 2208 105 10 0 chr12 128927772 128928077 -14858378 - AluSc SINE Alu -1 308 1 2277 91 0 0 chr12 128928179 128928477 -14857978 - AluSg SINE Alu -12 298 1 451 368 43 12 chr12 128928489 128928747 -14857708 + L1MC/D LINE L1 5372 5637 -2171 2378 97 0 0 chr12 128928775 128929085 -14857370 + AluSx SINE Alu 1 310 -2 264 209 134 0 chr12 128930092 128930159 -14856296 - MIR3 SINE MIR -23 185 110 2409 61 3 0 chr12 128930362 128930657 -14855798 + AluSp SINE Alu 1 296 -17 1122 189 0 0 chr12 128930659 128930849 -14855606 - AluJo SINE Alu -36 276 87 971 112 0 14 chr12 128930849 128930992 -14855463 - FLAM_C SINE Alu 0 143 3 207 308 83 25 chr12 128931166 128931286 -14855169 - MIR SINE MIR -106 156 30 1300 167 144 23 chr12 128931481 128931744 -14854711 - AluJo SINE Alu -6 296 2 189 349 46 9 chr12 128932223 128932332 -14854123 + L2 LINE L2 3197 3309 -4 2257 72 0 7 chr12 128932590 128932882 -14853573 + AluSc SINE Alu 1 290 -19 2093 104 14 3 chr12 128933171 128933468 -14852987 - AluSx SINE Alu -12 300 1 1928 143 7 0 chr12 128933624 128933917 -14852538 - AluJo SINE Alu -15 297 3 1355 182 58 45 chr12 128933920 128934082 -14852373 - AluJo SINE Alu -7 295 126 2281 83 0 7 chr12 128934082 128934382 -14852073 - AluSx SINE Alu -14 298 1 1355 182 58 45 chr12 128934382 128934510 -14851945 - AluJo SINE Alu -176 126 1 390 290 0 0 chr12 128934515 128934615 -14851840 + MIR SINE MIR 49 148 -60 2478 55 0 0 chr12 128934727 128935036 -14851419 + AluY SINE Alu 1 309 -2 197 258 15 30 chr12 128935141 128935207 -14851248 - MIR SINE MIR -6 256 192 267 221 0 126 chr12 128935223 128935288 -14851167 + MIR SINE MIR 59 110 -152 2126 112 3 0 chr12 128935288 128935583 -14850872 - AluSq SINE Alu -17 296 1 267 221 0 126 chr12 128935583 128935612 -14850843 + MIR SINE MIR 110 141 -121 415 233 0 0 chr12 128936832 128936918 -14849537 - L2 LINE L2 0 3313 3228 455 257 79 7 chr12 128937008 128937160 -14849295 - MIR SINE MIR -2 260 98 465 291 0 0 chr12 128937168 128937295 -14849160 - MIR SINE MIR -31 231 105 647 282 68 13 chr12 128937307 128937541 -14848914 - MIR SINE MIR -1 261 15 58 74 0 0 chr12 128937664 128937785 -14848670 + GC_rich Low_complexity Low_complexity 1 121 0 27 29 0 0 chr12 128937841 128937875 -14848580 + GC_rich Low_complexity Low_complexity 1 34 0 997 57 0 0 chr12 128939065 128939189 -14847266 + AluSp/q SINE Alu 175 298 -15 294 229 81 70 chr12 128939367 128939538 -14846917 - L1ME4a LINE L1 -213 5908 5700 245 241 0 48 chr12 128939891 128939974 -14846481 + MIR SINE MIR 53 131 -131 2145 87 23 3 chr12 128940314 128940613 -14845842 + AluSg SINE Alu 1 305 -5 471 227 38 53 chr12 128941385 128941414 -14845041 - L2 LINE L2 0 3313 3285 2352 76 0 10 chr12 128941414 128941717 -14844738 + AluSc SINE Alu 1 300 -9 471 227 38 53 chr12 128941717 128941819 -14844636 - L2 LINE L2 -28 3285 3184 545 227 47 0 chr12 128941825 128941953 -14844502 - L2 LINE L2 0 3313 3180 226 275 25 12 chr12 128942671 128942751 -14843704 + L2 LINE L2 3194 3274 -39 1024 204 133 0 chr12 128942945 128943185 -14843270 + Charlie1b DNA MER1_type 1 272 -251 1612 142 6 89 chr12 128943192 128943375 -14843080 - AluJo SINE Alu -2 310 166 2006 124 0 26 chr12 128943375 128943681 -14842774 - AluSx SINE Alu -14 298 1 1612 142 6 89 chr12 128943681 128943835 -14842620 - AluJo SINE Alu -146 166 1 346 278 0 0 chr12 128943837 128943934 -14842521 + Charlie1b DNA MER1_type 400 496 -27 1636 148 0 41 chr12 128943935 128944079 -14842376 + AluJo SINE Alu 1 129 -183 2019 121 0 33 chr12 128944079 128944385 -14842070 + AluSx SINE Alu 1 296 -16 1636 148 0 41 chr12 128944385 128944530 -14841925 + AluJo SINE Alu 129 278 -34 210 283 141 10 chr12 128945095 128945194 -14841261 + MIR SINE MIR 35 146 -62 291 273 139 74 chr12 128945400 128945616 -14840839 - MIR SINE MIR -12 250 21 1776 62 90 0 chr12 128945945 128946189 -14840266 - AluSx SINE Alu -3 309 44 544 232 134 0 chr12 128946630 128946794 -14839661 + MIR SINE MIR 13 198 -64 382 200 47 0 chr12 128946869 128946954 -14839501 - MIR3 SINE MIR -39 169 81 240 160 0 40 chr12 128947630 128947680 -14838775 + L3 LINE CR1 1525 1572 -5 860 167 8 0 chr12 128949348 128949480 -14836975 - FLAM_C SINE Alu 0 133 1 2228 81 3 7 chr12 128949529 128949827 -14836628 - AluSp SINE Alu -16 297 1 2141 65 44 3 chr12 128950026 128950319 -14836136 - AluY SINE Alu -6 305 1 522 247 92 4 chr12 128950818 128951057 -14835398 + L2 LINE L2 2807 3066 -247 492 301 52 0 chr12 128952147 128952300 -14834155 - MIR3 SINE MIR -24 184 24 1017 148 0 0 chr12 128952806 128952968 -14833487 - FRAM SINE Alu -14 162 1 196 259 56 0 chr12 128953529 128953583 -14832872 - MIR SINE MIR -48 214 158 183 42 0 0 chr12 128954389 128954413 -14832042 + (TG)n Simple_repeat Simple_repeat 2 25 0 196 300 80 20 chr12 128954588 128954688 -14831767 + MIR3 SINE MIR 5 110 -98 295 301 11 0 chr12 128954843 128954936 -14831519 - MIR SINE MIR -57 151 58 1948 118 17 3 chr12 128954977 128955273 -14831182 + AluSx SINE Alu 1 300 -12 2404 59 7 0 chr12 128956550 128956853 -14829602 - AluSp SINE Alu -8 305 1 1537 75 42 14 chr12 128956996 128957249 -14829206 + AluSg SINE Alu 64 322 0 555 233 89 85 chr12 128957327 128957585 -14828870 - MIR SINE MIR 0 262 4 304 313 87 13 chr12 128958558 128958708 -14827747 + L1MC5 LINE L1 7766 7926 -35 297 258 22 11 chr12 128959246 128959335 -14827120 - L2 LINE L2 -13 3259 3170 1882 146 7 13 chr12 128960218 128960526 -14825929 + AluSx SINE Alu 1 306 -6 1907 155 0 3 chr12 128960535 128960832 -14825623 + AluJo SINE Alu 1 296 -16 224 365 46 54 chr12 128960970 128961211 -14825244 + L2 LINE L2 2950 3188 -84 516 311 55 74 chr12 128962730 128963235 -14823220 + L2 LINE L2 2809 3305 -8 2261 96 0 0 chr12 128963235 128963537 -14822918 + AluY SINE Alu 1 302 -9 301 278 104 35 chr12 128964201 128964345 -14822110 + L1ME4a LINE L1 5968 6121 0 2308 88 3 0 chr12 128964491 128964797 -14821658 + AluSx SINE Alu 1 307 -5 386 303 52 58 chr12 128964832 128964987 -14821468 - L1ME LINE L1 -387 5734 5581 1745 175 3 0 chr12 128965169 128965460 -14820995 - AluJb SINE Alu -14 298 7 333 292 104 10 chr12 128966925 128967117 -14819338 + L1ME4a LINE L1 5644 5853 -268 2227 93 3 0 chr12 128967175 128967475 -14818980 + AluSx SINE Alu 1 301 -11 792 210 0 73 chr12 128967532 128967737 -14818718 - AluJb SINE Alu -3 309 120 21 36 0 0 chr12 128967758 128967786 -14818669 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 128967889 128967909 -14818546 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 534 56 14 0 chr12 128968641 128968712 -14817743 - AluS SINE Alu -229 83 12 277 272 26 18 chr12 128968752 128968866 -14817589 - L1M4 LINE L1 -3563 2583 2469 186 338 50 12 chr12 128969797 128969877 -14816578 + MIR3 SINE MIR 78 160 -48 1404 179 4 4 chr12 128970010 128970261 -14816194 - AluJo SINE Alu -12 300 50 1020 158 0 18 chr12 128970430 128970594 -14815861 + AluJo SINE Alu 1 161 -151 294 262 0 0 chr12 128970594 128970655 -14815800 + FLAM SINE Alu 56 116 -17 230 356 22 0 chr12 128970989 128971079 -14815376 - L2 LINE L2 -6 3307 3216 1935 132 48 0 chr12 128971505 128971800 -14814655 + AluSc SINE Alu 1 309 0 2541 58 0 0 chr12 128971846 128972156 -14814299 + AluY SINE Alu 1 310 -1 1841 181 3 0 chr12 128973209 128973519 -14812936 - AluJo SINE Alu -1 311 1 282 56 0 0 chr12 128973566 128973602 -14812853 + (CA)n Simple_repeat Simple_repeat 1 36 0 291 71 0 0 chr12 128973604 128973646 -14812809 + (TA)n Simple_repeat Simple_repeat 2 43 0 320 183 0 5 chr12 128973709 128973791 -14812664 - Alu SINE Alu -252 47 1 282 56 0 0 chr12 128973814 128973850 -14812605 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 95 0 0 chr12 128973852 128973894 -14812561 + (TA)n Simple_repeat Simple_repeat 2 43 0 233 325 0 0 chr12 128975753 128975830 -14810625 - MIR SINE MIR -99 163 87 334 196 65 56 chr12 128975830 128975937 -14810518 + MER3 DNA MER1_type 102 209 0 321 131 82 0 chr12 128976990 128977051 -14809404 - MER3 DNA MER1_type -1 208 143 502 329 84 31 chr12 128978403 128978867 -14807588 + L1ME4a LINE L1 5344 5888 -233 2387 67 0 0 chr12 128979921 128980219 -14806236 + AluY SINE Alu 1 298 -13 858 282 47 35 chr12 128981883 128982227 -14804228 - L2 LINE L2 0 3313 2966 202 211 0 19 chr12 128982908 128982960 -14803495 + L2 LINE L2 3204 3254 -18 973 277 126 56 chr12 128983386 128983924 -14802531 + MLT1K LTR MaLR 2 577 -11 1288 149 4 47 chr12 128985035 128985270 -14801185 + AluJb SINE Alu 5 229 -83 225 0 0 0 chr12 128985270 128985295 -14801160 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 364 243 94 77 chr12 128985938 128986119 -14800336 + L1ME4a LINE L1 5924 6107 -14 308 288 110 34 chr12 128986088 128986206 -14800249 + L1MC4 LINE L1 6576 6702 -1340 343 256 89 11 chr12 128986103 128986193 -14800262 - L1MCa LINE L1 -4335 2091 1995 302 266 0 0 chr12 128986177 128986241 -14800214 - L1MC4 LINE L1 -1339 6703 6640 * 1937 92 42 11 chr12 128986242 128986525 -14799930 - AluY SINE Alu -19 292 1 1025 96 0 0 chr12 128986525 128986660 -14799795 - AluSq/x SINE Alu -177 135 1 1848 152 0 20 chr12 128986662 128986964 -14799491 - AluSx SINE Alu -16 296 1 181 77 0 0 chr12 128986972 128986998 -14799457 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2235 93 7 0 chr12 128986998 128987278 -14799177 - AluSg SINE Alu -28 282 1 26 0 0 0 chr12 128987284 128987310 -14799145 + AT_rich Low_complexity Low_complexity 1 26 0 2368 96 7 3 chr12 128987311 128987613 -14798842 + AluSx SINE Alu 1 303 -9 2478 62 0 0 chr12 128987622 128987912 -14798543 + AluY SINE Alu 10 299 -12 1938 144 0 14 chr12 128987919 128988225 -14798230 + AluJb SINE Alu 1 302 0 360 248 153 15 chr12 128988227 128988248 -14798207 + L1MC4a LINE L1 5798 5815 -1993 2271 91 3 41 chr12 128988248 128988566 -14797889 + AluSp SINE Alu 1 306 -7 360 248 153 15 chr12 128988566 128988746 -14797709 + L1MC4a LINE L1 5815 6027 -1781 2322 65 65 3 chr12 128990204 128990497 -14795958 + AluY SINE Alu 1 311 0 311 222 0 37 chr12 128990511 128990592 -14795863 + L1MC4a LINE L1 5793 5870 -1938 21 0 0 0 chr12 128990598 128990619 -14795836 + AT_rich Low_complexity Low_complexity 1 21 0 2023 108 0 0 chr12 128990700 128990959 -14795496 - AluSg SINE Alu -18 292 34 1254 68 7 0 chr12 128991717 128991864 -14794591 + AluSp SINE Alu 1 148 -165 215 228 34 64 chr12 128991888 128991982 -14794473 - MIR SINE MIR -92 116 20 2038 112 66 3 chr12 128992069 128992355 -14794100 + AluSg SINE Alu 1 304 -6 2212 119 0 3 chr12 128992374 128992667 -14793788 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr12 128992855 128992883 -14793572 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 128992917 128992945 -14793510 + AT_rich Low_complexity Low_complexity 1 28 0 1487 120 5 14 chr12 128993134 128993351 -14793104 - AluJo SINE Alu -94 218 4 2175 110 20 0 chr12 128993702 128993994 -14792461 - AluSx SINE Alu -14 298 1 2172 97 45 3 chr12 128994248 128994538 -14791917 - AluSx SINE Alu -10 302 1 2399 90 7 7 chr12 128995700 128996000 -14790455 + AluSc SINE Alu 1 300 -9 2111 114 3 7 chr12 128996053 128996343 -14790112 + AluSx SINE Alu 21 309 -3 309 272 102 7 chr12 128996558 128996705 -14789750 - L1ME4a LINE L1 0 6121 5961 2131 120 17 10 chr12 128997954 128998255 -14788200 - AluSx SINE Alu -9 303 1 683 159 0 24 chr12 128998255 128998462 -14787993 - AluJb SINE Alu -19 293 1 504 270 105 65 chr12 128999082 128999579 -14786876 + L2 LINE L2 2715 3270 -2 254 277 157 0 chr12 129000345 129000428 -14786027 - L2 LINE L2 -5 3267 3172 1379 69 0 0 chr12 129000428 129000587 -14785868 - AluSc SINE Alu -19 290 132 2669 53 0 0 chr12 129000587 129000888 -14785567 - AluY SINE Alu -10 301 1 257 286 0 45 chr12 129000889 129001001 -14785454 - L2 LINE L2 -93 3220 3114 310 247 55 0 chr12 129001046 129001119 -14785336 - L2 LINE L2 -1 3312 3236 2209 78 7 62 chr12 129001215 129001524 -14784931 + AluSp SINE Alu 2 293 -20 2225 94 35 0 chr12 129001524 129001812 -14784643 + AluSc SINE Alu 1 298 -11 2696 35 0 13 chr12 129001896 129002207 -14784248 + AluY SINE Alu 1 307 -4 347 238 12 0 chr12 129002252 129002332 -14784123 + L1ME3A LINE L1 5658 5738 -2070 1914 163 3 3 chr12 129002373 129002679 -14783776 + AluJb SINE Alu 1 306 -6 26 30 0 0 chr12 129002701 129002734 -14783721 + AT_rich Low_complexity Low_complexity 1 33 0 2539 76 3 0 chr12 129002747 129003051 -14783404 + AluSp SINE Alu 1 305 -8 2157 142 0 13 chr12 129003054 129003370 -14783085 + AluSx SINE Alu 1 312 0 283 214 41 92 chr12 129003722 129003820 -14782635 - MIR SINE MIR -80 182 90 2137 111 17 7 chr12 129003845 129004142 -14782313 + AluSx SINE Alu 1 300 -12 272 333 0 0 chr12 129004483 129004552 -14781903 + L2 LINE L2 3205 3273 -40 795 224 94 5 chr12 129005758 129005959 -14780496 - MIR SINE MIR -37 225 7 189 304 18 0 chr12 129006235 129006291 -14780164 + L2 LINE L2 3256 3312 -1 415 241 76 7 chr12 129006331 129006476 -14779979 + L1ME3A LINE L1 6016 6170 0 263 298 131 0 chr12 129006701 129006785 -14779670 - MIR SINE MIR -21 241 147 2216 115 0 0 chr12 129006798 129007086 -14779369 - AluSg SINE Alu -20 290 3 1562 141 0 21 chr12 129007241 129007475 -14778980 + AluJb SINE Alu 1 229 -83 699 106 0 0 chr12 129007475 129007579 -14778876 + AluSg/x SINE Alu 192 295 -15 475 251 190 0 chr12 129007913 129008092 -14778363 - MIR SINE MIR 0 262 50 2414 85 0 10 chr12 129008398 129008705 -14777750 - AluSq SINE Alu -9 304 1 362 260 13 0 chr12 129008712 129008789 -14777666 - MER5A DNA MER1_type -3 186 109 950 131 0 15 chr12 129008790 129008927 -14777528 - AluJb SINE Alu -20 292 158 567 198 26 9 chr12 129008927 129009043 -14777412 - MER5A DNA MER1_type -71 118 1 207 196 0 0 chr12 129009052 129009098 -14777357 + A-rich Low_complexity Low_complexity 1 46 0 2426 91 0 0 chr12 129009341 129009648 -14776807 + AluSx SINE Alu 1 307 -5 2225 92 46 0 chr12 129009770 129010054 -14776401 + AluY SINE Alu 1 297 -14 2352 86 0 10 chr12 129010267 129010558 -14775897 - AluSg SINE Alu -20 290 3 2268 91 20 20 chr12 129010560 129010856 -14775599 - AluSg SINE Alu -14 296 1 2201 136 0 3 chr12 129010886 129011196 -14775259 + AluSx SINE Alu 1 309 -3 1452 120 5 5 chr12 129011235 129011444 -14775011 + AluSg/x SINE Alu 102 310 0 729 189 147 5 chr12 129011691 129011881 -14774574 - MER20 DNA MER1_type -2 217 1 581 295 32 0 chr12 129012124 129012280 -14774175 + MIR SINE MIR 50 210 -52 213 253 69 35 chr12 129012319 129012406 -14774049 - MIR SINE MIR -85 177 88 825 257 164 54 chr12 129012892 129013506 -14772949 - HAL1 LINE L1 0 2507 1826 300 193 18 0 chr12 129013577 129013634 -14772821 - HAL1 LINE L1 -904 1603 1546 2417 79 0 20 chr12 129013635 129013940 -14772515 + AluSg SINE Alu 1 299 -11 2241 112 30 0 chr12 129013952 129014255 -14772200 + AluSq SINE Alu 1 312 -1 1166 66 0 0 chr12 129014260 129014396 -14772059 + AluSq/x SINE Alu 1 136 -177 584 168 132 78 chr12 129014405 129014498 -14771957 + MER3 DNA MER1_type 34 121 -88 2223 112 10 3 chr12 129014498 129014793 -14771662 - AluSq SINE Alu -16 297 1 584 168 132 78 chr12 129014793 129014866 -14771589 + MER3 DNA MER1_type 121 209 0 460 314 62 44 chr12 129015287 129015475 -14770980 - MIR SINE MIR -60 202 14 227 143 24 0 chr12 129015463 129015505 -14770950 + L2 LINE L2 3263 3305 -8 * 1645 129 0 79 chr12 129016685 129016839 -14769616 + AluSq SINE Alu 1 125 -188 2021 127 14 7 chr12 129016839 129017130 -14769325 + AluSg SINE Alu 1 293 -17 1645 129 0 79 chr12 129017130 129017254 -14769201 + AluSq SINE Alu 125 257 -56 1628 146 62 31 chr12 129017579 129017867 -14768588 + AluJo SINE Alu 1 297 -15 192 200 0 0 chr12 129018038 129018088 -14768367 + (CAG)n Simple_repeat Simple_repeat 3 52 0 539 151 0 0 chr12 129019123 129019209 -14767246 - AluSg/x SINE Alu -17 292 207 221 190 152 76 chr12 129019268 129019302 -14767153 - MIR SINE MIR -51 211 181 2313 58 38 10 chr12 129019302 129019594 -14766861 + AluY SINE Alu 1 300 -11 221 190 152 76 chr12 129019594 129019638 -14766817 - MIR SINE MIR -81 181 127 2303 93 0 3 chr12 129021372 129021663 -14764792 + AluSc SINE Alu 1 290 -19 2491 55 0 13 chr12 129022665 129022973 -14763482 - AluY SINE Alu -7 304 1 553 242 123 29 chr12 129023017 129023038 -14763417 + L2 LINE L2 2687 2705 -608 2356 97 0 7 chr12 129023038 129023347 -14763108 + AluSx SINE Alu 1 307 -5 553 242 123 29 chr12 129023347 129023626 -14762829 + L2 LINE L2 2705 3016 -297 1974 176 0 3 chr12 129023629 129023942 -14762513 - AluJb SINE Alu 0 312 1 2327 97 0 3 chr12 129024100 129024398 -14762057 + AluY SINE Alu 1 297 -14 2435 100 3 0 chr12 129024451 129024762 -14761693 - AluSp SINE Alu -1 312 1 2551 73 0 0 chr12 129024874 129025176 -14761279 + AluY SINE Alu 3 304 -7 324 0 0 0 chr12 129025252 129025288 -14761167 + (CA)n Simple_repeat Simple_repeat 2 37 0 2418 87 0 3 chr12 129025661 129025960 -14760495 - AluSp SINE Alu -15 298 1 666 206 88 93 chr12 129026198 129026264 -14760191 + MER58A DNA MER1_type 2 67 -2353 2330 104 3 0 chr12 129026264 129026571 -14759884 + AluSg SINE Alu 1 308 -2 2358 78 0 0 chr12 129026577 129026888 -14759567 + AluY SINE Alu 1 311 0 666 206 88 93 chr12 129026888 129027007 -14759448 + MER58A DNA MER1_type 72 194 -30 225 94 0 0 chr12 129027023 129027055 -14759400 + (A)n Simple_repeat Simple_repeat 1 32 0 1989 118 43 24 chr12 129027352 129027681 -14758774 - MER1B DNA MER1_type 0 337 3 2129 113 0 3 chr12 129028191 129028502 -14757953 - AluSx SINE Alu 0 310 1 617 328 48 18 chr12 129028789 129029018 -14757437 - MIR SINE MIR -26 236 1 293 250 80 0 chr12 129029131 129029243 -14757212 + L1ME4a LINE L1 5774 5894 -227 2515 87 0 0 chr12 129029261 129029570 -14756885 + AluSx SINE Alu 1 309 -3 585 121 0 0 chr12 129029642 129029725 -14756730 - AluJ/FLAM SINE Alu -228 84 2 1260 98 43 77 chr12 129029901 129029981 -14756474 - MER30 DNA MER1_type 0 230 149 2514 56 0 0 chr12 129029981 129030268 -14756187 - AluY SINE Alu -3 308 22 1260 98 43 77 chr12 129030268 129030422 -14756033 - MER30 DNA MER1_type -81 149 4 2250 128 0 0 chr12 129030422 129030720 -14755735 + AluSx SINE Alu 1 298 -14 2194 103 31 0 chr12 129030720 129031009 -14755446 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 129033925 129033948 -14752507 + AT_rich Low_complexity Low_complexity 1 23 0 493 144 41 10 chr12 129033948 129034045 -14752410 - FLAM_C SINE Alu -18 125 26 411 190 60 0 chr12 129034058 129034158 -14752297 - MIR SINE MIR -126 136 31 228 179 236 98 chr12 129034220 129034286 -14752169 - MER103 DNA DNA -25 141 85 2157 109 0 3 chr12 129034286 129034592 -14751863 + AluSx SINE Alu 1 305 0 228 179 236 98 chr12 129034592 129034647 -14751808 - MER103 DNA DNA -81 85 2 306 335 34 34 chr12 129035599 129035775 -14750680 - MIR SINE MIR -59 203 28 186 133 0 0 chr12 129037366 129037396 -14749059 + (TG)n Simple_repeat Simple_repeat 1 30 0 345 257 63 32 chr12 129038494 129038676 -14747779 + MIR3 SINE MIR 3 186 -65 1986 86 0 80 chr12 129038774 129039087 -14747368 - AluSg SINE Alu -22 288 1 22 70 0 0 chr12 129039109 129039152 -14747303 + AT_rich Low_complexity Low_complexity 1 43 0 2028 137 7 0 chr12 129039232 129039531 -14746924 - AluJo SINE Alu -9 303 3 2348 92 0 6 chr12 129039551 129039865 -14746590 - AluSp SINE Alu -1 312 1 712 269 110 5 chr12 129039924 129040143 -14746312 - MIR SINE MIR -16 246 5 430 219 181 100 chr12 129043307 129043517 -14742938 - MIR SINE MIR -28 234 8 305 286 31 10 chr12 129043539 129043637 -14742818 + L2 LINE L2 3134 3233 -39 2302 53 30 26 chr12 129044351 129044653 -14741802 + AluY SINE Alu 1 303 -8 306 293 43 69 chr12 129046617 129046805 -14739650 - MIR SINE MIR -12 250 68 224 324 29 29 chr12 129047576 129047678 -14738777 - MIR SINE MIR -71 137 36 342 314 89 30 chr12 129047895 129048064 -14738391 + MIR SINE MIR 20 198 -64 297 137 0 0 chr12 129048357 129048408 -14738047 + AluJo SINE Alu 85 135 -167 1874 177 0 0 chr12 129048408 129048707 -14737748 + AluJb SINE Alu 1 299 -13 447 265 108 38 chr12 129050694 129050879 -14735576 + MIR SINE MIR 63 260 -2 456 231 19 9 chr12 129052094 129052202 -14734253 + L2 LINE L2 3162 3270 -43 182 324 88 44 chr12 129052240 129052376 -14734079 + MIR3 SINE MIR 4 145 -63 1676 159 40 14 chr12 129053211 129053507 -14732948 - AluJo SINE Alu -4 308 5 1938 138 10 7 chr12 129054505 129054795 -14731660 - AluSx SINE Alu -21 291 1 1977 139 0 32 chr12 129055312 129055628 -14730827 + AluSx SINE Alu 7 312 0 247 277 126 25 chr12 129055796 129055915 -14730540 + MIR3 SINE MIR 2 132 -76 185 263 53 53 chr12 129056076 129056190 -14730265 + MIR3 SINE MIR 15 128 -80 829 160 70 45 chr12 129057504 129057660 -14728795 - AluJb SINE Alu -15 297 138 2326 90 0 0 chr12 129057664 129057964 -14728491 - AluSg1 SINE Alu -9 300 1 1721 176 11 0 chr12 129057981 129058291 -14728164 - AluJo SINE Alu 0 313 1 198 103 0 0 chr12 129058307 129058336 -14728119 + (TG)n Simple_repeat Simple_repeat 2 30 0 297 0 0 0 chr12 129058338 129058371 -14728084 + (CA)n Simple_repeat Simple_repeat 2 34 0 1422 136 0 5 chr12 129058371 129058577 -14727878 - AluSg/x SINE Alu -36 274 70 2034 122 0 29 chr12 129060355 129060491 -14725964 + AluSx SINE Alu 2 140 -172 2282 78 3 3 chr12 129060491 129060787 -14725668 + AluSg SINE Alu 1 296 -14 2034 122 0 29 chr12 129060787 129060962 -14725493 + AluSx SINE Alu 140 304 -8 384 286 189 20 chr12 129060996 129061192 -14725263 + MER102a DNA MER1_type 97 325 -5 393 263 175 7 chr12 129061200 129061337 -14725118 + MIR SINE MIR 23 182 -80 182 244 192 13 chr12 129062710 129062788 -14723667 - L2 LINE L2 -38 3234 3143 200 215 84 65 chr12 129062811 129062918 -14723537 - L2 LINE L2 -258 3014 2906 228 302 122 51 chr12 129062992 129063287 -14723168 - L2 LINE L2 -643 2671 2356 2153 105 17 0 chr12 129063793 129064087 -14722368 + AluSx SINE Alu 1 299 -13 211 309 21 10 chr12 129064306 129064403 -14722052 + L2 LINE L2 2920 3017 -255 1644 183 7 10 chr12 129064597 129064897 -14721558 + AluJo SINE Alu 1 299 -13 229 331 44 109 chr12 129064902 129065177 -14721278 + L2 LINE L2 3015 3271 -1 2070 128 3 13 chr12 129065422 129065554 -14720901 + AluSg1 SINE Alu 1 133 -176 2578 36 0 7 chr12 129065554 129065862 -14720593 + AluY SINE Alu 1 306 -5 2070 128 3 13 chr12 129065862 129066041 -14720414 + AluSg1 SINE Alu 133 309 0 26 0 0 0 chr12 129066041 129066067 -14720388 + AT_rich Low_complexity Low_complexity 1 26 0 2504 52 0 3 chr12 129066695 129067000 -14719455 + AluY SINE Alu 1 304 -7 1446 244 70 19 chr12 129067045 129067294 -14719161 + L1MEc LINE L1 1884 2119 -4277 1672 134 9 126 chr12 129067294 129067434 -14719021 + AluJo SINE Alu 1 156 -146 2138 107 40 0 chr12 129067434 129067734 -14718721 + AluSx SINE Alu 1 312 0 1672 134 9 126 chr12 129067734 129067762 -14718693 + AluJo SINE Alu 156 186 -116 2238 105 0 10 chr12 129067762 129068067 -14718388 + AluSc SINE Alu 1 302 -7 1672 134 9 126 chr12 129068067 129068239 -14718216 + AluJo SINE Alu 186 302 0 1446 244 70 19 chr12 129068239 129068521 -14717934 + L1MEc LINE L1 2119 2442 -3954 966 204 22 55 chr12 129069034 129069308 -14717147 + L1MEc LINE L1 2385 2649 -3566 441 0 0 0 chr12 129069682 129069731 -14716724 + (CA)n Simple_repeat Simple_repeat 1 49 0 631 274 102 15 chr12 129069847 129070044 -14716411 + MIR SINE MIR 48 261 -1 2062 124 0 0 chr12 129070044 129070358 -14716097 + AluSx SINE Alu 1 314 0 2198 122 0 3 chr12 129072111 129072422 -14714033 + AluSx SINE Alu 1 310 -2 2068 127 3 0 chr12 129072425 129072724 -14713731 + AluSx SINE Alu 1 300 -12 2071 102 4 0 chr12 129072733 129073036 -14713419 + AluSx SINE Alu 9 312 0 339 344 31 8 chr12 129073168 129073296 -14713159 - MIR SINE MIR -118 144 14 236 348 51 8 chr12 129073409 129073527 -14712928 - L2 LINE L2 -11 3302 3180 438 259 59 7 chr12 129073978 129073997 -14712458 - Charlie8 DNA MER1_type -178 163 146 1564 96 0 14 chr12 129073997 129074217 -14712238 + AluSg/x SINE Alu 93 309 -1 438 259 59 7 chr12 129074217 129074332 -14712123 - Charlie8 DNA MER1_type -195 146 22 2265 125 0 0 chr12 129074380 129074692 -14711763 + AluSx SINE Alu 1 312 0 288 267 30 74 chr12 129074729 129074864 -14711591 + MIR SINE MIR 63 191 -71 1111 245 71 100 chr12 129074865 129075059 -14711396 + L1MA9 LINE L1 5743 5941 -248 2063 139 7 0 chr12 129075059 129075368 -14711087 - AluSx SINE Alu -1 311 1 1111 245 71 100 chr12 129075368 129075719 -14710736 + L1MA9 LINE L1 5941 6168 -21 2309 104 0 0 chr12 129075731 129076038 -14710417 - AluSg SINE Alu -3 307 1 2183 103 6 10 chr12 129076605 129076916 -14709539 + AluSg SINE Alu 1 310 0 1787 124 9 84 chr12 129076953 129077276 -14709179 + AluSx SINE Alu 1 299 -13 1589 178 31 3 chr12 129077328 129077615 -14708840 + AluJo SINE Alu 11 305 -7 2103 99 13 22 chr12 129077898 129078210 -14708245 - AluSx SINE Alu -3 309 1 2260 101 0 0 chr12 129079100 129079398 -14707057 + AluSx SINE Alu 1 298 -14 234 251 47 99 chr12 129079919 129079967 -14706488 - L1MC4 LINE L1 -121 7921 7872 2221 106 0 28 chr12 129079967 129080289 -14706166 + AluSp SINE Alu 1 313 0 2169 135 0 0 chr12 129080299 129080610 -14705845 + AluSx SINE Alu 1 311 -1 234 251 47 99 chr12 129080610 129080721 -14705734 - L1MC4 LINE L1 -179 7863 7760 2137 94 37 0 chr12 129081417 129081714 -14704741 + AluSp SINE Alu 1 308 -5 1298 179 0 5 chr12 129081875 129082099 -14704356 + AluJb SINE Alu 3 225 -87 891 241 23 55 chr12 129082120 129082377 -14704078 + MIR SINE MIR 4 252 -10 1959 112 0 0 chr12 129082420 129082679 -14703776 - AluSx SINE Alu -52 260 2 216 321 12 12 chr12 129083052 129083133 -14703322 + MIR SINE MIR 1 81 -181 335 316 251 5 chr12 129083641 129083828 -14702627 + MIR SINE MIR 11 243 -19 405 237 16 129 chr12 129084689 129084875 -14701580 + MIR SINE MIR 20 184 -78 275 174 0 94 chr12 129086928 129087066 -14699389 + C-rich Low_complexity Low_complexity 5 129 0 1816 111 80 0 chr12 129088141 129088429 -14698026 - AluSx SINE Alu -1 311 1 1341 88 0 0 chr12 129088429 129088564 -14697891 - AluSx SINE Alu -177 135 1 494 318 64 1 chr12 129088755 129088934 -14697521 - MIR SINE MIR -72 190 2 1507 186 74 18 chr12 129089227 129089566 -14696889 - MLT1A1 LTR MaLR -7 358 1 448 252 131 32 chr12 129089633 129089790 -14696665 + MIR SINE MIR 63 229 -32 2150 123 7 0 chr12 129089836 129090129 -14696326 + AluSx SINE Alu 14 308 -4 435 68 0 0 chr12 129090129 129090188 -14696267 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 2241 102 3 22 chr12 129090231 129090406 -14696049 - AluSx SINE Alu -4 308 140 2677 52 0 0 chr12 129090406 129090716 -14695739 - AluY SINE Alu -1 310 1 2241 102 3 22 chr12 129090716 129090854 -14695601 - AluSx SINE Alu -172 140 1 685 208 7 35 chr12 129090871 129091015 -14695440 + FLAM_A SINE Alu 1 140 -2 2069 118 52 0 chr12 129091017 129091306 -14695149 + AluSq SINE Alu 1 304 -9 2052 120 40 10 chr12 129091311 129091610 -14694845 + AluSx SINE Alu 1 308 -4 1134 119 16 100 chr12 129091610 129091657 -14694798 - MER33 DNA MER1_type -2355 230 181 2251 87 31 0 chr12 129091657 129091944 -14694511 + AluSc SINE Alu 1 296 -13 1134 119 16 100 chr12 129091944 129092079 -14694376 - MER33 DNA MER1_type -2404 181 72 1916 183 0 3 chr12 129092079 129092390 -14694065 - AluJb SINE Alu -2 310 1 1134 119 16 100 chr12 129092390 129092457 -14693998 - MER33 DNA MER1_type -2513 72 1 2387 95 0 0 chr12 129092479 129092785 -14693670 - AluSg SINE Alu -4 306 1 184 333 0 0 chr12 129092794 129092839 -14693616 + L2 LINE L2 3012 3056 -257 2268 110 7 10 chr12 129092879 129093189 -14693266 + AluSx SINE Alu 1 309 -3 2434 63 3 27 chr12 129093243 129093575 -14692880 + AluY SINE Alu 1 325 0 2322 84 0 0 chr12 129093578 129093862 -14692593 + AluSc SINE Alu 1 284 -25 443 225 194 0 chr12 129093882 129094011 -14692444 + L2 LINE L2 3158 3311 -2 2227 112 16 19 chr12 129094095 129094233 -14692222 + AluSx SINE Alu 1 138 -174 2429 57 20 7 chr12 129094233 129094532 -14691923 + AluSp SINE Alu 1 303 -10 2227 112 16 19 chr12 129094532 129094706 -14691749 + AluSx SINE Alu 138 312 0 817 145 8 0 chr12 129094820 129094937 -14691518 + FLAM_C SINE Alu 1 118 -15 417 283 53 68 chr12 129095013 129095221 -14691234 - L1ME4a LINE L1 -58 6063 5853 1805 174 0 22 chr12 129095221 129095538 -14690917 - AluJb SINE Alu -2 310 1 417 283 53 68 chr12 129095538 129095782 -14690673 - L1ME4a LINE L1 -268 5853 5618 863 128 8 23 chr12 129095989 129096122 -14690333 - FLAM_C SINE Alu -12 131 1 2619 53 0 0 chr12 129096125 129096427 -14690028 - AluY SINE Alu -9 302 1 194 0 0 37 chr12 129096508 129096535 -14689920 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2268 99 0 0 chr12 129096538 129096822 -14689633 - AluSc SINE Alu -25 284 1 183 42 0 0 chr12 129096856 129096880 -14689575 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1908 148 3 26 chr12 129096912 129097216 -14689239 + AluSx SINE Alu 1 297 -15 300 286 107 9 chr12 129097220 129097332 -14689123 + MIR SINE MIR 49 171 -91 2293 118 0 7 chr12 129097371 129097677 -14688778 + AluSx SINE Alu 3 306 -6 318 285 112 50 chr12 129097815 129098057 -14688398 + L2 LINE L2 2449 2705 -609 2030 127 7 3 chr12 129098060 129098343 -14688112 - AluSx SINE Alu -23 289 6 2071 107 0 4 chr12 129098352 129098654 -14687801 - AluSx SINE Alu 0 316 16 8110 94 11 131 chr12 129098675 129100251 -14686204 - SVA Other Other 0 1386 1 300 159 0 0 chr12 129100290 129100334 -14686121 + Alu SINE Alu 1 44 -258 570 245 156 56 chr12 129100367 129100636 -14685819 + L2 LINE L2 3017 3312 -1 234 297 132 0 chr12 129100656 129100747 -14685708 - MIR3 SINE MIR -91 117 15 2547 67 3 13 chr12 129100817 129101129 -14685326 - AluY SINE Alu -2 309 1 183 42 0 0 chr12 129101130 129101154 -14685301 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2234 93 0 4 chr12 129101160 129101440 -14685015 - AluSg SINE Alu -31 279 1 524 273 19 12 chr12 129101440 129101601 -14684854 + L1MC4a LINE L1 5702 5863 -1945 2290 81 14 0 chr12 129101690 129101985 -14684470 + AluSq SINE Alu 1 299 -14 1893 145 40 10 chr12 129101998 129102301 -14684154 + AluJb SINE Alu 1 312 0 2086 119 3 10 chr12 129102448 129102742 -14683713 - AluSg SINE Alu -18 292 1 2312 98 7 3 chr12 129102794 129103101 -14683354 + AluSg SINE Alu 1 308 -2 1363 189 102 0 chr12 129103136 129103401 -14683054 + AluJo SINE Alu 1 292 -20 648 70 0 0 chr12 129104045 129104072 -14682383 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 648 70 0 0 chr12 129104072 129104158 -14682297 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 2287 113 0 0 chr12 129104191 129104502 -14681953 + AluY SINE Alu 1 311 0 323 226 0 130 chr12 129104846 129104865 -14681590 + MIR SINE MIR 50 70 -192 1909 148 3 3 chr12 129104865 129105163 -14681292 + AluJb SINE Alu 1 298 -14 323 226 0 130 chr12 129105163 129105258 -14681197 + MIR SINE MIR 70 149 -113 407 254 24 85 chr12 129105265 129105430 -14681025 + MIR SINE MIR 62 216 -46 382 274 152 10 chr12 129105545 129105742 -14680713 - MIR SINE MIR -2 260 36 2280 112 0 0 chr12 129106033 129106329 -14680126 + AluSx SINE Alu 1 296 -16 2231 117 16 0 chr12 129106340 129106648 -14679807 + AluSp SINE Alu 1 313 0 1090 178 0 11 chr12 129106648 129106828 -14679627 + AluSg/x SINE Alu 132 309 -1 2223 124 7 0 chr12 129106836 129107142 -14679313 + AluSx SINE Alu 3 310 -2 2145 103 0 4 chr12 129107160 129107441 -14679014 + AluSx SINE Alu 14 293 -19 411 289 26 20 chr12 129107462 129107614 -14678841 + L2 LINE L2 2919 3071 -201 2305 91 10 0 chr12 129107716 129108012 -14678443 + AluY SINE Alu 1 299 -12 498 224 69 52 chr12 129108035 129108209 -14678246 - MER5B DNA MER1_type -1 177 1 355 303 63 42 chr12 129108211 129108353 -14678102 - MIR SINE MIR -93 169 25 2389 96 0 0 chr12 129108930 129109223 -14677232 + AluSg SINE Alu 1 293 -17 350 243 64 72 chr12 129109266 129109384 -14677071 + L1ME4a LINE L1 5536 5653 -487 1721 114 4 0 chr12 129109384 129109637 -14676818 + AluSq SINE Alu 57 310 0 350 243 64 72 chr12 129109637 129109783 -14676672 + L1ME4a LINE L1 5653 5789 -351 345 302 73 58 chr12 129109805 129109887 -14676568 + L1ME4a LINE L1 5843 5922 -199 2553 57 0 7 chr12 129109887 129110187 -14676268 - AluY SINE Alu -13 298 1 345 302 73 58 chr12 129110187 129110379 -14676076 + L1ME4a LINE L1 5922 6121 0 288 68 0 0 chr12 129110473 129110517 -14675938 + L1MB5 LINE L1 6122 6165 -9 1735 141 15 77 chr12 129110517 129110700 -14675755 - AluJb SINE Alu -5 307 151 1697 201 0 16 chr12 129110700 129111013 -14675442 + AluJb SINE Alu 3 310 -2 1735 141 15 77 chr12 129111013 129111156 -14675299 - AluJb SINE Alu -161 151 1 720 221 97 0 chr12 129111260 129111414 -14675041 + MER5A DNA MER1_type 10 178 -11 289 225 0 0 chr12 129111415 129111486 -14674969 - LTR37B LTR ERV1 -384 84 14 2253 76 0 60 chr12 129111487 129111804 -14674651 - AluSg SINE Alu -12 298 1 645 130 20 0 chr12 129111804 129111904 -14674551 - AluSg/x SINE Alu -2 307 206 2192 91 14 3 chr12 129112300 129112596 -14673859 + AluSq SINE Alu 8 306 -7 1323 14 0 0 chr12 129112949 129113093 -14673362 - U4 snRNA snRNA -1 144 1 1956 90 28 10 chr12 129113510 129113798 -14672657 + AluSg SINE Alu 1 293 -17 495 120 80 0 chr12 129113931 129114006 -14672449 + AluY SINE Alu 211 291 -20 1329 14 0 0 chr12 129114283 129114427 -14672028 - U4 snRNA snRNA -1 144 1 2042 164 51 68 chr12 129114792 129115191 -14671264 - L1MB3 LINE L1 0 6183 5779 2155 110 34 3 chr12 129115191 129115483 -14670972 - AluSq SINE Alu -12 301 1 2042 164 51 68 chr12 129115483 129115499 -14670956 - L1MB3 LINE L1 -404 5779 5764 1736 69 190 0 chr12 129115499 129115746 -14670709 - AluSq SINE Alu -9 294 1 1384 140 156 0 chr12 129115753 129116003 -14670452 - AluJb SINE Alu -11 291 3 1974 115 51 14 chr12 129116011 129116306 -14670149 - AluSx SINE Alu -6 306 1 2042 164 51 68 chr12 129116306 129116395 -14670060 - L1MB3 LINE L1 -432 5751 5670 2254 99 0 43 chr12 129116395 129116574 -14669881 - AluSp SINE Alu -4 309 149 219 88 0 0 chr12 129116574 129116608 -14669847 + (TA)n Simple_repeat Simple_repeat 1 34 0 2254 99 0 43 chr12 129116608 129116751 -14669704 - AluSp SINE Alu -164 149 1 2042 164 51 68 chr12 129116751 129116813 -14669642 - L1MB3 LINE L1 -513 5670 5608 1902 119 3 89 chr12 129116970 129117306 -14669149 + AluSx SINE Alu 6 312 0 1931 28 0 0 chr12 129117413 129117626 -14668829 - AluY SINE Alu -18 293 81 2022 128 14 7 chr12 129117694 129117991 -14668464 - AluJb SINE Alu -5 307 9 2445 82 0 0 chr12 129118132 129118415 -14668040 + AluSg SINE Alu 1 286 -24 285 51 0 0 chr12 129118415 129118454 -14668001 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2445 82 0 0 chr12 129118454 129118473 -14667982 + AluSg SINE Alu 285 303 -7 246 128 0 0 chr12 129118506 129118545 -14667910 + (A)n Simple_repeat Simple_repeat 1 39 0 258 214 0 0 chr12 129118684 129118768 -14667687 + A-rich Low_complexity Low_complexity 1 84 0 285 136 0 0 chr12 129119181 129119225 -14667230 - FRAM SINE Alu -46 120 77 1383 75 0 0 chr12 129119239 129119412 -14667043 + AluSp SINE Alu 137 309 -4 1792 132 64 4 chr12 129119516 129119797 -14666658 + AluJb SINE Alu 1 298 -14 2268 78 3 0 chr12 129119816 129120135 -14666320 + AluSg SINE Alu 1 320 0 2279 48 34 24 chr12 129120135 129120457 -14665998 + AluY SINE Alu 2 311 0 2111 128 7 0 chr12 129120459 129120757 -14665698 + AluSx SINE Alu 1 300 -12 2407 136 115 2 chr12 129120757 129121192 -14665263 - LTR64 LTR ERVK -39 519 36 1898 165 0 22 chr12 129121192 129121508 -14664947 + AluJb SINE Alu 1 309 -3 255 202 22 112 chr12 129121598 129121627 -14664828 + MIR3 SINE MIR 102 132 -76 1898 161 0 16 chr12 129121627 129121937 -14664518 - AluJo SINE Alu -7 305 1 255 202 22 112 chr12 129121937 129121996 -14664459 + MIR3 SINE MIR 132 182 -26 201 156 0 0 chr12 129122100 129122132 -14664323 + MER5B DNA MER1_type 86 117 -61 22 35 0 0 chr12 129122146 129122175 -14664280 + AT_rich Low_complexity Low_complexity 1 29 0 2263 113 0 0 chr12 129122254 129122572 -14663883 + AluSg SINE Alu 1 318 0 1088 83 0 0 chr12 129122707 129122840 -14663615 + AluSq/x SINE Alu 1 133 -179 359 83 0 0 chr12 129122874 129122922 -14663533 + L1MA1 LINE L1 6210 6257 -45 204 203 14 58 chr12 129122926 129122981 -14663474 + A-rich Low_complexity Low_complexity 3 59 -9 1944 77 91 44 chr12 129122981 129123278 -14663177 + AluSq SINE Alu 1 311 -2 328 130 0 0 chr12 129123278 129123332 -14663123 + L1MA3 LINE L1 6252 6305 0 204 203 14 58 chr12 129123332 129123344 -14663111 + A-rich Low_complexity Low_complexity 57 68 0 2417 86 0 9 chr12 129123897 129124212 -14662243 - AluSx SINE Alu 0 312 1 2158 117 16 7 chr12 129124387 129124696 -14661759 + AluSx SINE Alu 1 312 0 193 256 0 0 chr12 129125289 129125332 -14661123 + L2 LINE L2 3161 3203 -69 626 270 44 10 chr12 129125335 129125539 -14660916 - LTR16C LTR ERVL -27 464 254 2158 88 65 10 chr12 129125557 129125851 -14660604 + AluSx SINE Alu 1 310 -2 707 214 0 0 chr12 129125863 129125980 -14660475 + FLAM_C SINE Alu 7 123 -20 297 0 0 0 chr12 129125993 129126026 -14660429 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr12 129126026 129126049 -14660406 + (T)n Simple_repeat Simple_repeat 1 23 0 2286 101 0 41 chr12 129126061 129126378 -14660077 + AluSx SINE Alu 1 304 -8 1767 175 7 32 chr12 129126397 129126415 -14660040 - AluJo SINE Alu -12 300 283 297 109 0 0 chr12 129126415 129126461 -14659994 + (TG)n Simple_repeat Simple_repeat 1 46 0 1767 175 7 32 chr12 129126461 129126750 -14659705 - AluJo SINE Alu -29 283 1 419 294 70 7 chr12 129126752 129126895 -14659560 - LTR16C LTR ERVL -251 240 89 2653 61 0 0 chr12 129126920 129127230 -14659225 + AluY SINE Alu 1 310 -1 736 197 0 0 chr12 129127242 129127364 -14659091 + FLAM_C SINE Alu 5 126 -17 2335 92 9 22 chr12 129127383 129127700 -14658755 + AluSp SINE Alu 1 313 0 2240 127 0 3 chr12 129127709 129128017 -14658438 + AluSx SINE Alu 1 307 -5 2059 119 14 0 chr12 129128398 129128692 -14657763 + AluSx SINE Alu 1 298 -14 2275 109 6 6 chr12 129128767 129129079 -14657376 + AluSq SINE Alu 1 312 -1 848 152 0 23 chr12 129129214 129129346 -14657109 - FLAM_C SINE Alu -4 129 1 2317 85 7 16 chr12 129129355 129129662 -14656793 - AluSq SINE Alu -9 304 1 2213 80 3 43 chr12 129130078 129130380 -14656075 + AluSp SINE Alu 2 291 -22 345 241 106 29 chr12 129130412 129130582 -14655873 - L1MC5 LINE L1 -37 7924 7742 2489 84 0 3 chr12 129130590 129130899 -14655556 - AluSx SINE Alu -1 311 4 2234 128 3 7 chr12 129130900 129131206 -14655249 - AluSx SINE Alu -7 305 1 576 165 0 0 chr12 129131211 129131302 -14655153 - FRAM SINE Alu -17 159 69 440 131 0 0 chr12 129131338 129131399 -14655056 + AluS SINE Alu 2 62 -248 1397 88 0 0 chr12 129131399 129131580 -14654875 + AluSg/x SINE Alu 125 305 -5 734 181 8 8 chr12 129131580 129131707 -14654748 - AluJo/FLAM SINE Alu -175 127 1 966 145 0 108 chr12 129131759 129131932 -14654523 + AluJo SINE Alu 118 265 -47 2626 27 3 0 chr12 129131932 129132224 -14654231 - AluY SINE Alu -18 293 1 966 145 0 108 chr12 129132224 129132264 -14654191 + AluJo SINE Alu 265 308 -4 2572 65 13 0 chr12 129132266 129132575 -14653880 + AluSp SINE Alu 1 313 0 2441 95 0 9 chr12 129132639 129132954 -14653501 + AluSp SINE Alu 1 312 -1 201 330 90 21 chr12 129132954 129133187 -14653268 - L2 LINE L2 -1257 2057 1809 2035 132 6 16 chr12 129133190 129133501 -14652954 + AluJb SINE Alu 1 308 -4 21 0 0 0 chr12 129134400 129134421 -14652034 + AT_rich Low_complexity Low_complexity 1 21 0 708 120 30 0 chr12 129134431 129134531 -14651924 - U6 snRNA snRNA -4 103 1 1803 178 0 3 chr12 129134540 129134838 -14651617 - AluJb SINE Alu -15 297 1 2258 104 7 3 chr12 129134843 129135132 -14651323 - AluSx SINE Alu -20 292 3 213 39 0 0 chr12 129135133 129135159 -14651296 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2052 103 44 0 chr12 129135159 129135430 -14651025 - AluSx SINE Alu -29 283 1 2456 83 0 13 chr12 129135997 129136132 -14650323 + AluY SINE Alu 1 136 -175 2327 80 20 3 chr12 129136132 129136431 -14650024 + AluY SINE Alu 1 304 -7 2456 83 0 13 chr12 129136431 129136608 -14649847 + AluY SINE Alu 136 309 -2 2006 112 11 4 chr12 129136625 129136927 -14649528 + AluSc SINE Alu 1 304 0 28 0 0 0 chr12 129136955 129136983 -14649472 + AT_rich Low_complexity Low_complexity 1 28 0 1603 62 141 31 chr12 129136983 129137210 -14649245 - AluY SINE Alu -25 286 35 1841 115 4 0 chr12 129137253 129137505 -14648950 + AluSx SINE Alu 40 292 -20 2245 105 3 25 chr12 129137544 129137859 -14648596 + AluSq SINE Alu 1 308 -5 309 296 256 15 chr12 129137976 129138179 -14648276 - MIR SINE MIR -6 256 5 1502 136 178 4 chr12 129139326 129139590 -14646865 - AluJb SINE Alu -2 310 1 207 0 0 0 chr12 129139675 129139698 -14646757 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr12 129139950 129139987 -14646468 + AT_rich Low_complexity Low_complexity 1 37 0 359 304 88 12 chr12 129140015 129140186 -14646269 + MIR SINE MIR 49 232 -30 350 250 0 0 chr12 129140304 129140376 -14646079 + L2 LINE L2 3242 3313 0 2168 98 13 3 chr12 129140385 129140690 -14645765 + AluSc SINE Alu 1 308 -1 1981 121 0 4 chr12 129140839 129141120 -14645335 - AluSx SINE Alu -32 280 1 1917 144 7 3 chr12 129141179 129141484 -14644971 - AluSx SINE Alu -6 306 1 669 314 68 4 chr12 129141551 129141787 -14644668 + MIR SINE MIR 12 262 0 374 0 0 21 chr12 129141791 129141838 -14644617 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 831 132 0 0 chr12 129141845 129141966 -14644489 - AluJo/FRAM SINE Alu -23 289 169 1010 141 0 0 chr12 129141966 129142115 -14644340 - FRAM SINE Alu -28 148 1 2485 53 0 0 chr12 129142202 129142505 -14643950 + AluY SINE Alu 1 303 -8 443 300 141 14 chr12 129142612 129142832 -14643623 + MIR SINE MIR 13 260 -2 1842 164 0 0 chr12 129142941 129143251 -14643204 + AluSx SINE Alu 1 310 -2 594 168 174 20 chr12 129143620 129143769 -14642686 + MER53 DNA DNA 1 172 -17 2078 128 3 0 chr12 129143770 129144075 -14642380 - AluSq SINE Alu -7 306 1 306 282 57 32 chr12 129144224 129144348 -14642107 + L1ME4a LINE L1 5993 6119 -2 2084 133 0 0 chr12 129144449 129144751 -14641704 - AluSx SINE Alu -6 306 5 210 37 0 0 chr12 129144832 129144859 -14641596 + (TG)n Simple_repeat Simple_repeat 2 28 0 324 347 30 25 chr12 129144924 129145123 -14641332 + L1ME4a LINE L1 5757 5956 -165 518 211 19 90 chr12 129145130 129145219 -14641236 - L2 LINE L2 -7 3306 3231 1774 139 52 7 chr12 129145219 129145507 -14640948 + AluSx SINE Alu 1 301 -11 518 211 19 90 chr12 129145507 129145573 -14640882 - L2 LINE L2 -82 3231 3162 1708 178 0 7 chr12 129145573 129145877 -14640578 + AluJo SINE Alu 1 302 -10 638 160 34 0 chr12 129145889 129146008 -14640447 + MIR SINE MIR 70 192 -70 1857 71 109 4 chr12 129146422 129146689 -14639766 - AluSq SINE Alu -18 295 1 25 65 0 0 chr12 129147373 129147419 -14639036 + AT_rich Low_complexity Low_complexity 1 46 0 249 33 0 0 chr12 129147446 129147476 -14638979 + (TTC)n Simple_repeat Simple_repeat 3 32 0 941 95 0 0 chr12 129147534 129147660 -14638795 - AluY SINE Alu -14 297 172 611 252 52 43 chr12 129147688 129147768 -14638687 - L2 LINE L2 -5 3308 3230 423 0 0 0 chr12 129147768 129147815 -14638640 + (TAA)n Simple_repeat Simple_repeat 3 49 0 611 252 52 43 chr12 129147815 129147878 -14638577 - L2 LINE L2 -83 3230 3169 2219 95 0 3 chr12 129147878 129148184 -14638271 + AluY SINE Alu 1 305 -6 611 252 52 43 chr12 129148184 129148249 -14638206 - L2 LINE L2 -144 3169 3097 1125 123 5 96 chr12 129148265 129148535 -14637920 + AluSg/x SINE Alu 85 334 0 788 201 0 0 chr12 129148546 129148680 -14637775 + FRAM SINE Alu 29 162 -14 1019 174 80 14 chr12 129149315 129149528 -14636927 + AluJb SINE Alu 86 312 0 422 321 21 21 chr12 129149613 129149753 -14636702 - MIR3 SINE MIR -65 143 4 2150 96 3 0 chr12 129149852 129150143 -14636312 + AluSp SINE Alu 1 292 -21 2319 62 0 17 chr12 129150177 129150469 -14635986 - AluY SINE Alu -24 287 1 1015 142 90 47 chr12 129150488 129150671 -14635784 - L1MB5 LINE L1 -9 6165 5970 2186 113 7 3 chr12 129150671 129150980 -14635475 - AluSq SINE Alu -3 310 1 1015 142 90 47 chr12 129150980 129151008 -14635447 - L1MB5 LINE L1 -204 5970 5945 250 154 169 15 chr12 129151077 129151090 -14635365 - L1MC3 LINE L1 -317 7468 7458 1743 162 0 29 chr12 129151090 129151280 -14635175 - AluJo SINE Alu -6 306 127 2131 104 0 0 chr12 129151280 129151568 -14634887 + AluY SINE Alu 1 288 -23 1743 162 0 29 chr12 129151568 129151691 -14634764 - AluJo SINE Alu -185 127 2 250 154 169 15 chr12 129151691 129151742 -14634713 - L1MC3 LINE L1 -327 7458 7394 285 51 0 0 chr12 129151742 129151781 -14634674 + (TG)n Simple_repeat Simple_repeat 2 40 0 1046 99 7 0 chr12 129151784 129151925 -14634530 - AluSg/x SINE Alu -37 275 134 2384 88 0 0 chr12 129151925 129152233 -14634222 - AluSc SINE Alu -1 308 1 572 135 21 0 chr12 129152233 129152329 -14634126 - L1MC3 LINE L1 -379 7406 7309 2079 77 54 7 chr12 129152360 129152657 -14633798 + AluY SINE Alu 1 311 0 714 173 58 0 chr12 129152657 129152796 -14633659 - MER3 DNA MER1_type -62 147 1 1774 139 0 0 chr12 129153140 129153399 -14633056 - AluSx SINE Alu -53 259 1 365 229 12 0 chr12 129153469 129153552 -14632903 - MIR SINE MIR -97 165 82 2447 59 13 0 chr12 129154061 129154366 -14632089 - AluSp SINE Alu -4 309 1 567 231 47 109 chr12 129154425 129154681 -14631774 - MIR SINE MIR -2 260 21 197 289 0 0 chr12 129154925 129154977 -14631478 - MER5B DNA MER1_type 0 178 127 930 181 6 0 chr12 129154987 129155147 -14631308 + FRAM SINE Alu 2 162 -14 2147 121 0 7 chr12 129155209 129155515 -14630940 - AluSx SINE Alu -8 304 1 21 0 0 0 chr12 129155519 129155540 -14630915 + AT_rich Low_complexity Low_complexity 1 21 0 2270 95 0 0 chr12 129155545 129155840 -14630615 + AluSp SINE Alu 1 295 -18 180 111 0 0 chr12 129155983 129156010 -14630445 + (T)n Simple_repeat Simple_repeat 1 27 0 620 163 73 16 chr12 129156010 129156133 -14630322 - THE1C LTR MaLR -245 130 1 9467 125 12 45 chr12 129156133 129156501 -14629954 - THE1B-int LTR MaLR 0 1580 1201 8085 58 30 1 chr12 129156501 129157183 -14629272 + LTR13 LTR ERVK 1 721 -286 204 40 0 0 chr12 129157183 129157208 -14629247 + (TC)n Simple_repeat Simple_repeat 2 26 0 8085 58 30 1 chr12 129157208 129157504 -14628951 + LTR13 LTR ERVK 721 1007 0 9467 125 12 45 chr12 129157504 129157824 -14628631 - THE1B-int LTR MaLR -379 1201 872 2130 134 98 15 chr12 129157824 129158160 -14628295 - THE1B LTR MaLR 0 364 1 9467 125 12 45 chr12 129158160 129159083 -14627372 - THE1B-int LTR MaLR -708 872 22 518 111 0 0 chr12 129159081 129159153 -14627302 - THE1-int LTR MaLR -620 960 889 * 1043 170 87 29 chr12 129159153 129159359 -14627096 - THE1B LTR MaLR 0 364 147 1866 117 126 29 chr12 129159375 129159717 -14626738 - THE1C LTR MaLR 0 375 1 230 276 48 0 chr12 129159718 129159823 -14626632 - L1MC5 LINE L1 -160 7801 7692 * 2165 149 74 45 chr12 129159815 129160139 -14626316 - L1MB2 LINE L1 -1 6170 5826 2209 102 0 26 chr12 129160139 129160452 -14626003 - AluSx SINE Alu -7 305 1 2165 149 74 45 chr12 129160452 129160611 -14625844 - L1MB2 LINE L1 -345 5826 5673 248 111 0 0 chr12 129160613 129160649 -14625806 + Alu SINE Alu 1 36 -267 1798 175 102 70 chr12 129160756 129160972 -14625483 + MER34 LTR ERV1 27 235 -307 1825 151 0 10 chr12 129160972 129161271 -14625184 - AluJb SINE Alu -16 296 1 2003 105 20 3 chr12 129161279 129161573 -14624882 - AluSx SINE Alu -13 299 1 1798 175 102 70 chr12 129161573 129161688 -14624767 + MER34 LTR ERV1 241 351 -191 1407 213 9 19 chr12 129161688 129162003 -14624452 - AluJo SINE Alu 0 312 1 1798 175 102 70 chr12 129162003 129162073 -14624382 + MER34 LTR ERV1 351 417 -125 2014 136 7 0 chr12 129162073 129162375 -14624080 - AluSx SINE Alu -8 304 1 1798 175 102 70 chr12 129162375 129162460 -14623995 + MER34 LTR ERV1 417 540 -2 207 0 0 0 chr12 129163840 129163863 -14622592 + (A)n Simple_repeat Simple_repeat 1 23 0 248 270 29 58 chr12 129164065 129164239 -14622216 + G-rich Low_complexity Low_complexity 6 174 0 1540 167 0 65 chr12 129164389 129164713 -14621742 - AluJo SINE Alu -9 303 1 346 224 198 0 chr12 129164716 129164832 -14621623 + L2 LINE L2 2935 3073 -240 2052 118 3 0 chr12 129165048 129165345 -14621110 - AluSx SINE Alu -14 298 1 331 225 41 21 chr12 129165356 129165525 -14620930 - L1ME LINE L1 -344 5818 5571 1615 149 17 23 chr12 129165610 129165912 -14620543 + AluJo SINE Alu 1 300 -12 1964 114 7 32 chr12 129165915 129166223 -14620232 + AluSx SINE Alu 1 300 -12 1392 108 0 28 chr12 129166264 129166478 -14619977 + AluJb SINE Alu 7 214 -98 232 277 62 0 chr12 129166523 129166624 -14619831 - L1ME LINE L1 -703 5468 5369 183 196 78 0 chr12 129166636 129166687 -14619768 + L2 LINE L2 3134 3188 -84 258 321 107 0 chr12 129167057 129167169 -14619286 + L2 LINE L2 3188 3311 -2 538 283 80 63 chr12 129167876 129168134 -14618321 + L2 LINE L2 2917 3183 -89 2337 75 0 13 chr12 129168134 129168439 -14618016 - AluSx SINE Alu -11 301 1 538 283 80 63 chr12 129168439 129168530 -14617925 + L2 LINE L2 3183 3271 -1 286 244 197 69 chr12 129169021 129169295 -14617160 + LTR16A1 LTR ERVL 81 389 -68 247 301 84 0 chr12 129169403 129169486 -14616969 + L2 LINE L2 3182 3271 -1 237 289 54 36 chr12 129169606 129169772 -14616683 + L2 LINE L2 3014 3182 -131 2215 93 0 28 chr12 129169791 129170113 -14616342 + AluSp SINE Alu 1 313 0 755 174 0 0 chr12 129170113 129170228 -14616227 - AluJo/FLAM SINE Alu -187 115 1 2139 116 0 10 chr12 129170285 129170588 -14615867 - AluSx SINE Alu -12 300 1 994 118 0 0 chr12 129170588 129170723 -14615732 - AluSq/x SINE Alu -178 135 1 541 230 93 29 chr12 129170723 129170862 -14615593 + L2 LINE L2 3165 3312 -1 313 376 8 0 chr12 129171123 129171240 -14615215 + L2 LINE L2 3137 3254 -18 1750 132 4 22 chr12 129171242 129171515 -14614940 - AluJb SINE Alu -43 269 2 615 283 98 29 chr12 129171959 129172203 -14614252 + Charlie8 DNA MER1_type 26 286 -2131 359 243 19 39 chr12 129172204 129172307 -14614148 + L2 LINE L2 3213 3313 0 2489 68 0 0 chr12 129172886 129173197 -14613258 - AluY SINE Alu 0 311 1 28 0 0 0 chr12 129173198 129173226 -14613229 + AT_rich Low_complexity Low_complexity 1 28 0 1607 164 41 0 chr12 129173226 129173494 -14612961 - AluJo SINE Alu -31 281 3 451 284 52 0 chr12 129173638 129173772 -14612683 + MIR SINE MIR 46 186 -76 374 301 75 7 chr12 129174673 129174819 -14611636 - MIR SINE MIR 0 262 107 715 274 137 0 chr12 129174858 129175164 -14611291 + L2 LINE L2 2812 3159 -154 1702 161 37 10 chr12 129175166 129175464 -14610991 - AluJo SINE Alu -6 306 1 2175 95 3 0 chr12 129175613 129175908 -14610547 - AluSp SINE Alu -5 308 13 594 212 26 203 chr12 129175988 129176101 -14610354 + L1MC4 LINE L1 7602 7733 -309 828 149 8 15 chr12 129176101 129176235 -14610220 + FLAM_C SINE Alu 1 133 0 594 212 26 203 chr12 129176235 129176313 -14610142 + L1MC4 LINE L1 7733 7823 -219 2449 58 7 0 chr12 129176313 129176621 -14609834 + AluY SINE Alu 1 310 -1 594 212 26 203 chr12 129176621 129176960 -14609495 + L1MC4 LINE L1 7823 8039 -3 342 327 119 0 chr12 129177232 129177400 -14609055 + L2 LINE L2 2989 3176 -96 489 283 162 54 chr12 129177479 129177794 -14608661 + L2 LINE L2 2924 3272 0 255 256 26 13 chr12 129177794 129177872 -14608583 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 474 290 6 51 chr12 129178327 129178503 -14607952 - MIR SINE MIR -4 258 91 2192 100 0 16 chr12 129178684 129178994 -14607461 - AluSx SINE Alu -5 307 3 474 234 29 29 chr12 129179225 129179362 -14607093 - MIR SINE MIR -77 185 49 240 363 12 6 chr12 129179458 129179626 -14606829 + (CA)n Simple_repeat Simple_repeat 1 169 0 366 269 97 15 chr12 129180443 129180577 -14605878 - MIR SINE MIR -58 204 60 2138 105 3 0 chr12 129181180 129181474 -14604981 - AluSx SINE Alu -17 295 1 710 250 22 85 chr12 129181833 129182014 -14604441 + MIR SINE MIR 8 168 -94 837 171 0 0 chr12 129182014 129182143 -14604312 - FLAM_A SINE Alu -4 129 1 710 250 22 85 chr12 129182143 129182233 -14604222 + MIR SINE MIR 168 262 0 231 36 0 0 chr12 129182407 129182435 -14604020 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 30 0 0 0 chr12 129182908 129182938 -14603517 + GC_rich Low_complexity Low_complexity 1 30 0 734 275 12 53 chr12 129186077 129186099 -14600356 + MIR SINE MIR 3 24 -238 2252 103 0 0 chr12 129186099 129186400 -14600055 - AluSx SINE Alu -11 301 1 734 275 12 53 chr12 129186400 129186621 -14599834 + MIR SINE MIR 24 236 -26 376 297 14 34 chr12 129186967 129187115 -14599340 + MIR SINE MIR 65 209 -53 259 227 20 67 chr12 129189476 129189626 -14596829 + C-rich Low_complexity Low_complexity 6 148 0 29 70 0 0 chr12 129190099 129190156 -14596299 + GC_rich Low_complexity Low_complexity 1 57 0 187 111 22 22 chr12 129190174 129190219 -14596236 + (CCGGG)n Simple_repeat Simple_repeat 4 48 0 257 89 22 0 chr12 129190292 129190337 -14596118 + (CGG)n Simple_repeat Simple_repeat 2 47 0 33 80 0 36 chr12 129190415 129190552 -14595903 + GC_rich Low_complexity Low_complexity 1 132 0 29 60 0 0 chr12 129190625 129190675 -14595780 + GC_rich Low_complexity Low_complexity 1 50 0 349 259 185 31 chr12 129193407 129193569 -14592886 - L2 LINE L2 -13 3300 3114 2072 132 0 3 chr12 129193686 129193974 -14592481 - AluSx SINE Alu -25 287 1 182 191 0 43 chr12 129194001 129194048 -14592407 - L2 LINE L2 -271 3042 2998 2427 89 3 0 chr12 129194404 129194707 -14591748 + AluSg SINE Alu 1 304 -6 189 74 0 0 chr12 129194848 129194875 -14591580 + (TA)n Simple_repeat Simple_repeat 1 27 0 1824 170 3 26 chr12 129194876 129195187 -14591268 - AluJo SINE Alu -8 304 1 3262 131 47 64 chr12 129195208 129195561 -14590894 - L1MC1 LINE L1 -48 6285 5927 2455 78 0 0 chr12 129195561 129195855 -14590600 + AluY SINE Alu 1 294 -17 3262 131 47 64 chr12 129195855 129195960 -14590495 - L1MC1 LINE L1 -406 5927 5822 2015 119 3 60 chr12 129195960 129196320 -14590135 - AluJb SINE Alu 0 312 1 3262 131 47 64 chr12 129196320 129196503 -14589952 - L1MC1 LINE L1 -511 5822 5654 2035 134 0 0 chr12 129196809 129197086 -14589369 + AluSx SINE Alu 2 278 -34 569 254 146 39 chr12 129197086 129197291 -14589164 - MIR SINE MIR -21 241 15 1971 155 0 0 chr12 129197482 129197789 -14588666 - AluJb SINE Alu 0 307 1 298 259 59 24 chr12 129197817 129197902 -14588553 - L2 LINE L2 -47 3225 3138 685 134 0 0 chr12 129197922 129198019 -14588436 - AluJ/FLAM SINE Alu -215 97 1 426 265 81 10 chr12 129198038 129198187 -14588268 - MIR SINE MIR -68 194 37 253 224 282 0 chr12 129198809 129198894 -14587561 + MIR SINE MIR 35 143 -65 209 209 23 0 chr12 129199085 129199128 -14587327 + MIR3 SINE MIR 151 194 -14 693 190 44 1 chr12 129199479 129199639 -14586816 + L1ME LINE L1 5652 5820 -342 2041 101 14 38 chr12 129199647 129199935 -14586520 + AluSx SINE Alu 30 310 -2 2070 122 7 20 chr12 129199953 129200247 -14586208 + AluSx SINE Alu 11 300 -12 365 140 0 0 chr12 129200286 129200343 -14586112 - Alu SINE Alu 0 300 244 25 0 0 0 chr12 129200351 129200376 -14586079 + AT_rich Low_complexity Low_complexity 1 25 0 1066 137 98 95 chr12 129200410 129200610 -14585845 + MER33 DNA MER1_type 18 216 -2369 2280 116 0 0 chr12 129200610 129200942 -14585513 - AluSx SINE Alu 0 312 1 1066 137 98 95 chr12 129200942 129201011 -14585444 + MER33 DNA MER1_type 216 291 -2294 2425 64 0 0 chr12 129201011 129201293 -14585162 - AluY SINE Alu -14 297 16 1066 137 98 95 chr12 129201293 129201328 -14585127 + MER33 DNA MER1_type 291 324 0 667 204 28 57 chr12 129201328 129201509 -14584946 - L1ME3 LINE L1 -110 6052 5875 1995 143 0 7 chr12 129201509 129201818 -14584637 - AluJb SINE Alu 0 307 1 667 204 28 57 chr12 129201818 129201846 -14584609 - L1ME3 LINE L1 -287 5875 5848 1898 164 7 3 chr12 129201846 129202144 -14584311 + AluJo SINE Alu 1 299 -13 2452 76 16 0 chr12 129202258 129202561 -14583894 + AluY SINE Alu 1 308 -3 758 253 66 21 chr12 129202765 129203006 -14583449 - MIR SINE MIR -9 253 2 332 267 50 40 chr12 129203263 129203364 -14583091 - MIR3 SINE MIR -30 178 77 21 0 0 0 chr12 129203809 129203830 -14582625 + AT_rich Low_complexity Low_complexity 1 21 0 2005 117 39 26 chr12 129203837 129204145 -14582310 + AluSx SINE Alu 1 312 0 1008 183 17 71 chr12 129204197 129204437 -14582018 + AluJo SINE Alu 22 248 -64 414 0 0 0 chr12 129204576 129204622 -14581833 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 246 224 0 0 chr12 129204652 129204701 -14581754 + L2 LINE L2 3224 3272 0 2335 95 0 3 chr12 129204756 129205051 -14581404 + AluSg SINE Alu 1 294 -16 1238 134 0 0 chr12 129205051 129205222 -14581233 + AluSq SINE Alu 134 304 -9 1797 164 4 0 chr12 129205234 129205515 -14580940 + AluJo SINE Alu 14 295 -17 2111 131 3 0 chr12 129205553 129205844 -14580611 - AluSq SINE Alu -21 292 1 1046 186 0 16 chr12 129206153 129206327 -14580128 - AluJo SINE Alu -8 304 132 1816 177 0 19 chr12 129206327 129206500 -14579955 - AluSx SINE Alu -8 304 138 2343 106 0 0 chr12 129206500 129206803 -14579652 - AluSx SINE Alu -9 303 1 1816 177 0 19 chr12 129206803 129206939 -14579516 - AluSx SINE Alu -174 138 1 1046 186 0 16 chr12 129206939 129206952 -14579503 - AluJo SINE Alu -180 132 120 322 245 52 39 chr12 129206952 129207107 -14579348 + Charlie7 DNA MER1_type 2455 2611 -1 593 185 44 42 chr12 129207148 129207342 -14579113 + L1MB5 LINE L1 4928 5166 -980 1960 138 10 3 chr12 129207342 129207658 -14578797 + AluJo SINE Alu 1 312 0 593 185 44 42 chr12 129207658 129207691 -14578764 + L1MB5 LINE L1 5166 5197 -949 2244 121 7 3 chr12 129207691 129207998 -14578457 + AluSx SINE Alu 1 308 -4 1942 114 10 62 chr12 129207999 129208307 -14578148 + AluJb SINE Alu 1 292 -20 3303 168 68 80 chr12 129208322 129208902 -14577553 + L1MB5 LINE L1 5320 5888 -286 1940 147 3 7 chr12 129208902 129209195 -14577260 + AluJb SINE Alu 21 312 0 3303 168 68 80 chr12 129209195 129209448 -14577007 + L1MB5 LINE L1 5888 6143 -31 343 313 45 85 chr12 129209537 129209761 -14576694 - L1MC4a LINE L1 -1758 6050 5836 353 235 24 0 chr12 129210064 129210149 -14576306 + MIR SINE MIR 73 159 -103 222 157 39 0 chr12 129210578 129210629 -14575826 + G-rich Low_complexity Low_complexity 2 54 0 188 182 23 0 chr12 129210658 129210702 -14575753 + G-rich Low_complexity Low_complexity 6 50 0 947 161 0 11 chr12 129210770 129211128 -14575327 + GA-rich Low_complexity Low_complexity 1 353 0 1957 99 0 0 chr12 129211128 129211371 -14575084 + AluSq SINE Alu 1 243 -70 2308 102 0 22 chr12 129211388 129211701 -14574754 - AluSx SINE Alu -6 306 1 189 0 0 0 chr12 129211714 129211735 -14574720 + (A)n Simple_repeat Simple_repeat 1 21 0 438 171 9 18 chr12 129211741 129211852 -14574603 + GA-rich Low_complexity Low_complexity 4 113 0 612 206 0 23 chr12 129211866 129212041 -14574414 + GA-rich Low_complexity Low_complexity 4 174 0 469 277 92 4 chr12 129212041 129212296 -14574159 + L2 LINE L2 2780 3059 -254 308 270 56 0 chr12 129212529 129212618 -14573837 + MIR SINE MIR 49 142 -66 1416 133 93 75 chr12 129212620 129212784 -14573671 - AluSx SINE Alu 0 310 150 2135 108 0 33 chr12 129212784 129213090 -14573365 - AluSp SINE Alu -17 296 1 2350 90 0 0 chr12 129213090 129213380 -14573075 - AluSc SINE Alu -19 290 1 1416 133 93 75 chr12 129213380 129213519 -14572936 - AluSx SINE Alu -159 151 1 24 32 0 0 chr12 129213519 129213550 -14572905 + AT_rich Low_complexity Low_complexity 1 31 0 266 143 0 0 chr12 129213550 129213592 -14572863 - AluJb SINE Alu -177 125 84 991 165 0 123 chr12 129213592 129213798 -14572657 - AluJo SINE Alu -94 218 44 2210 100 4 0 chr12 129213798 129214106 -14572349 + AluSx SINE Alu 1 309 0 991 165 0 123 chr12 129214106 129214141 -14572314 - AluJo SINE Alu -268 44 6 2378 80 3 7 chr12 129214174 129214473 -14571982 + AluY SINE Alu 1 298 -13 641 230 52 39 chr12 129214612 129214840 -14571615 - MIR SINE MIR -12 250 15 979 205 0 0 chr12 129215029 129215200 -14571255 - AluJb SINE Alu -8 304 134 2094 130 27 0 chr12 129215200 129215500 -14570955 - AluSx SINE Alu -4 308 1 660 188 16 16 chr12 129216278 129216406 -14570049 + MIR SINE MIR 65 192 -70 601 99 0 0 chr12 129216510 129216591 -14569864 - FLAM_A SINE Alu -10 132 52 210 91 0 0 chr12 129216639 129216672 -14569783 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2074 134 10 0 chr12 129216686 129216985 -14569470 - AluSg SINE Alu -8 302 1 383 286 0 34 chr12 129216985 129217104 -14569351 - MIR SINE MIR -72 190 76 1291 211 55 97 chr12 129217305 129217488 -14568967 + L1ME3 LINE L1 5687 5876 -286 2162 119 6 19 chr12 129217488 129217800 -14568655 - AluSx SINE Alu 0 312 5 1291 211 55 97 chr12 129217800 129217988 -14568467 + L1ME3 LINE L1 5876 6034 -128 2341 104 0 0 chr12 129217988 129218287 -14568168 - AluSx SINE Alu -13 299 1 1291 211 55 97 chr12 129218287 129218407 -14568048 + L1ME3 LINE L1 6034 6158 -4 858 147 0 7 chr12 129218430 129218566 -14567889 - FLAM_C SINE Alu -8 135 1 267 211 28 0 chr12 129218578 129218649 -14567806 - MER113 DNA MER1_type? -405 116 44 1031 123 31 67 chr12 129218757 129218952 -14567503 - MER53 DNA DNA -1 188 1 667 277 79 10 chr12 129219743 129219945 -14566510 - MIR SINE MIR 0 262 47 2314 118 0 0 chr12 129220184 129220490 -14565965 + AluSx SINE Alu 1 306 -6 1396 203 19 12 chr12 129220654 129220975 -14565480 - L1ME1 LINE L1 -5 6161 5839 245 311 212 23 chr12 129221012 129221144 -14565311 + MIR SINE MIR 105 261 -1 * 344 219 0 27 chr12 129221133 129221206 -14565249 + L2 LINE L2 3172 3242 -71 471 261 9 9 chr12 129221234 129221349 -14565106 - MIR SINE MIR -124 138 24 1988 138 3 10 chr12 129221349 129221640 -14564815 - AluJb SINE Alu -18 294 6 1797 146 76 0 chr12 129221652 129221940 -14564515 - AluSx SINE Alu -2 310 1 396 211 56 87 chr12 129222114 129222275 -14564180 - MIR SINE MIR -1 261 106 2455 61 0 0 chr12 129222323 129222617 -14563838 + AluY SINE Alu 1 294 -17 1133 183 28 36 chr12 129222620 129222778 -14563677 - L1MA4 LINE L1 -15 6285 6128 2371 90 0 13 chr12 129222778 129223089 -14563366 - AluSx SINE Alu -5 307 1 1133 183 28 36 chr12 129223089 129223181 -14563274 - L1MA4 LINE L1 -172 6128 6037 288 247 10 52 chr12 129223807 129223904 -14562551 - MIR SINE MIR -148 114 22 386 259 111 52 chr12 129224104 129224120 -14562335 - MIR SINE MIR -15 247 233 1822 143 37 4 chr12 129224120 129224392 -14562063 - AluJb SINE Alu -31 281 1 386 259 111 52 chr12 129224392 129224490 -14561965 - MIR SINE MIR -29 233 142 2451 88 0 0 chr12 129224490 129224787 -14561668 - AluSq SINE Alu -16 297 1 386 259 111 52 chr12 129224787 129224895 -14561560 - MIR SINE MIR -120 142 7 347 252 151 42 chr12 129225160 129225279 -14561176 + MIR SINE MIR 21 152 -110 842 132 15 15 chr12 129225287 129225423 -14561032 + AluSq/x SINE Alu 1 136 -176 855 252 165 27 chr12 129225492 129225861 -14560594 + MLT1K LTR MaLR 45 464 -124 273 57 0 0 chr12 129226003 129226038 -14560417 + (TA)n Simple_repeat Simple_repeat 2 36 0 1962 124 11 0 chr12 129226038 129226311 -14560144 - AluSx SINE Alu -15 297 22 2218 124 0 0 chr12 129226334 129226633 -14559822 + AluSg SINE Alu 1 299 -11 720 120 83 0 chr12 129226643 129226771 -14559684 - FLAM_C SINE Alu 0 137 1 818 143 0 50 chr12 129226803 129226943 -14559512 + FLAM_C SINE Alu 11 143 0 375 219 29 48 chr12 129226962 129227067 -14559388 + L1MC4 LINE L1 6601 6703 -1339 376 255 10 41 chr12 129227069 129227167 -14559288 + L1MC4 LINE L1 6614 6708 -1334 201 217 0 22 chr12 129227168 129227214 -14559241 + (TA)n Simple_repeat Simple_repeat 2 46 0 531 230 31 68 chr12 129227827 129227953 -14558502 + MIR SINE MIR 20 149 -113 896 129 0 50 chr12 129227953 129228093 -14558362 + FLAM_C SINE Alu 1 133 0 531 230 31 68 chr12 129228093 129228107 -14558348 + MIR SINE MIR 149 156 -106 1622 134 24 102 chr12 129228107 129228442 -14558013 + AluYb8 SINE Alu 1 309 -9 531 230 31 68 chr12 129228442 129228461 -14557994 + MIR SINE MIR 156 174 -88 480 246 75 91 chr12 129228548 129228621 -14557834 - MIR SINE MIR 0 262 189 898 126 0 15 chr12 129228621 129228756 -14557699 + FLAM_C SINE Alu 1 133 0 480 246 75 91 chr12 129228756 129228934 -14557521 - MIR SINE MIR -73 189 15 2210 103 7 3 chr12 129229087 129229379 -14557076 - AluSg SINE Alu -16 294 2 998 202 0 0 chr12 129229390 129229558 -14556897 - FRAM SINE Alu -8 168 1 2163 125 0 0 chr12 129229571 129229860 -14556595 - AluSx SINE Alu -15 297 9 2554 76 0 13 chr12 129230266 129230581 -14555874 + AluSx SINE Alu 1 311 -1 596 268 42 26 chr12 129230606 129230796 -14555659 + MIR SINE MIR 2 194 -68 2449 88 0 7 chr12 129230806 129231111 -14555344 + AluSc SINE Alu 2 304 -5 2079 146 0 0 chr12 129231114 129231401 -14555054 + AluSg SINE Alu 3 289 -21 440 174 128 37 chr12 129231402 129231511 -14554944 + L1ME4a LINE L1 5926 6044 -77 1668 99 0 0 chr12 129231555 129231768 -14554687 - AluSc SINE Alu -5 304 92 23 33 0 0 chr12 129231806 129231836 -14554619 + AT_rich Low_complexity Low_complexity 1 30 0 2210 134 0 0 chr12 129231847 129232153 -14554302 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 129232358 129232379 -14554076 + AT_rich Low_complexity Low_complexity 1 21 0 911 130 15 0 chr12 129232386 129232517 -14553938 + FRAM SINE Alu 33 165 -11 2260 112 7 0 chr12 129232613 129232909 -14553546 - AluSx SINE Alu -14 298 1 2524 87 0 0 chr12 129232929 129233239 -14553216 - AluSg SINE Alu 0 310 1 253 365 43 5 chr12 129233248 129233456 -14552999 - L1ME LINE L1 -303 5818 5603 1835 178 24 0 chr12 129233501 129233833 -14552622 - MER2 DNA MER2_type -5 340 1 1887 138 50 10 chr12 129233887 129234185 -14552270 + AluSg SINE Alu 1 310 0 316 252 38 124 chr12 129234490 129234594 -14551861 - L1ME4a LINE L1 -5 6116 6037 2081 102 34 3 chr12 129234594 129234888 -14551567 + AluSx SINE Alu 1 303 -9 316 252 38 124 chr12 129234888 129234993 -14551462 - L1ME4a LINE L1 -84 6037 5925 290 169 0 48 chr12 129235488 129235612 -14550843 + (TG)n Simple_repeat Simple_repeat 1 118 0 201 163 0 61 chr12 129235612 129235661 -14550794 + GA-rich Low_complexity Low_complexity 4 49 0 550 243 243 0 chr12 129235692 129235869 -14550586 - MIR SINE MIR 0 262 43 2265 118 0 0 chr12 129235895 129236192 -14550263 + AluSx SINE Alu 1 297 -15 305 172 204 0 chr12 129236214 129236307 -14550148 + L1ME1 LINE L1 6049 6160 -6 2189 138 0 3 chr12 129236322 129236634 -14549821 - AluSx SINE Alu -1 311 1 1771 180 3 19 chr12 129236666 129236982 -14549473 + AluJo SINE Alu 1 311 -1 225 286 33 33 chr12 129237072 129237163 -14549292 + L2 LINE L2 3182 3272 0 214 170 113 19 chr12 129237166 129237219 -14549236 + MIR SINE MIR 93 150 -58 205 193 24 121 chr12 129237248 129237331 -14549124 + L2 LINE L2 3015 3089 -183 217 289 217 0 chr12 129237504 129237587 -14548868 + L2 LINE L2 3172 3272 0 2239 115 0 0 chr12 129237631 129237927 -14548528 + AluSq SINE Alu 1 296 -17 291 253 167 75 chr12 129238123 129238311 -14548144 + MIR SINE MIR 31 214 -13 2099 110 0 0 chr12 129238328 129238601 -14547854 - AluSx SINE Alu -18 294 22 873 133 0 8 chr12 129238604 129238732 -14547723 - AluJo/FLAM SINE Alu -181 131 5 1905 182 3 3 chr12 129238784 129239091 -14547364 - AluJb SINE Alu -1 311 5 700 277 85 0 chr12 129239158 129239346 -14547109 - MIR SINE MIR -8 254 51 951 198 12 0 chr12 129239353 129239525 -14546930 - MER5A DNA MER1_type -12 177 4 829 163 0 15 chr12 129239888 129240023 -14546432 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr12 129240214 129240503 -14545952 - AluSx SINE Alu -23 289 1 411 164 0 0 chr12 129240625 129240692 -14545763 + L1MC1 LINE L1 6063 6129 -204 694 172 16 0 chr12 129240692 129240814 -14545641 + FLAM_C SINE Alu 2 125 -8 1182 176 31 0 chr12 129240818 129241022 -14545433 + AluSc SINE Alu 1 201 -108 1088 110 0 0 chr12 129241024 129241173 -14545282 + AluSp/q SINE Alu 154 299 -14 1307 119 0 0 chr12 129241173 129241349 -14545106 + AluSp SINE Alu 121 296 -17 811 148 7 28 chr12 129241351 129241493 -14544962 + L1MC1 LINE L1 6186 6324 -9 1861 142 3 35 chr12 129241490 129241527 -14544928 - AluJo SINE Alu -6 306 269 2559 59 0 13 chr12 129241527 129241836 -14544619 + AluY SINE Alu 1 303 -8 274 83 0 0 chr12 129241834 129241870 -14544585 - Alu SINE Alu -22 280 245 1861 142 3 35 chr12 129241836 129242114 -14544341 - AluJo SINE Alu -43 269 1 2133 103 3 0 chr12 129242140 129242431 -14544024 + AluSx SINE Alu 1 292 -20 2156 98 3 3 chr12 129242434 129242730 -14543725 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr12 129242730 129242750 -14543705 + (GA)n Simple_repeat Simple_repeat 2 21 0 339 270 66 10 chr12 129242842 129243007 -14543448 - MIR SINE MIR -50 212 40 2052 104 10 0 chr12 129243225 129243513 -14542942 + AluSq SINE Alu 1 291 -22 2350 75 0 10 chr12 129243513 129243818 -14542637 + AluY SINE Alu 8 309 -2 614 257 59 32 chr12 129244145 129244332 -14542123 - MIR SINE MIR 0 262 71 738 109 58 6 chr12 129244425 129244581 -14541874 + CT-rich Low_complexity Low_complexity 3 166 0 1084 178 11 0 chr12 129244711 129244902 -14541553 + AluJb SINE Alu 103 295 -17 2492 52 0 0 chr12 129245020 129245325 -14541130 - AluY SINE Alu -6 305 1 390 290 0 0 chr12 129245437 129245537 -14540918 - MIR SINE MIR -60 148 49 1331 179 62 45 chr12 129245542 129245670 -14540785 + AluJo SINE Alu 1 125 -177 2271 87 0 7 chr12 129245670 129245970 -14540485 + AluSx SINE Alu 1 298 -14 1331 179 62 45 chr12 129245970 129246131 -14540324 + AluJo SINE Alu 125 295 -7 1928 143 7 0 chr12 129246134 129246427 -14540028 + AluJo SINE Alu 3 297 -15 2093 104 14 3 chr12 129246583 129246880 -14539575 + AluSx SINE Alu 1 300 -12 2257 72 0 7 chr12 129247169 129247461 -14538994 - AluSc SINE Alu -19 290 1 189 349 46 9 chr12 129247719 129247828 -14538627 - L2 LINE L2 -4 3309 3197 1234 178 147 23 chr12 129248307 129248566 -14537889 + AluJo SINE Alu 2 292 -10 207 308 83 25 chr12 129248758 129248878 -14537577 + MIR SINE MIR 30 156 -106 971 112 0 14 chr12 129249052 129249195 -14537260 + FLAM_C SINE Alu 3 143 0 1122 189 0 0 chr12 129249195 129249385 -14537070 + AluJo SINE Alu 87 276 -36 1294 80 0 0 chr12 129249387 129249550 -14536905 - AluSq SINE Alu -17 296 134 2520 53 0 0 chr12 129249550 129249851 -14536604 - AluY SINE Alu -10 301 1 262 286 0 45 chr12 129249852 129249964 -14536491 - L2 LINE L2 -93 3220 3114 250 288 55 0 chr12 129250008 129250081 -14536374 - L2 LINE L2 -1 3312 3236 2069 78 7 62 chr12 129250177 129250486 -14535969 + AluSp SINE Alu 2 293 -20 2101 93 35 0 chr12 129250486 129250775 -14535680 + AluSc SINE Alu 1 299 -10 2422 51 0 16 chr12 129250859 129251171 -14535284 + AluY SINE Alu 1 307 -4 555 233 89 85 chr12 129251265 129251523 -14534932 - MIR SINE MIR 0 262 4 304 313 87 13 chr12 129252496 129252646 -14533809 + L1MC5 LINE L1 7766 7926 -35 297 258 22 11 chr12 129253184 129253273 -14533182 - L2 LINE L2 -13 3259 3170 1882 146 7 13 chr12 129254156 129254464 -14531991 + AluSx SINE Alu 1 306 -6 1907 155 0 3 chr12 129254473 129254770 -14531685 + AluJo SINE Alu 1 296 -16 224 365 46 54 chr12 129254908 129255149 -14531306 + L2 LINE L2 2950 3188 -84 508 309 56 76 chr12 129256664 129257165 -14529290 + L2 LINE L2 2809 3299 -14 2371 87 0 0 chr12 129257169 129257478 -14528977 + AluY SINE Alu 1 309 -2 197 258 15 30 chr12 129257583 129257649 -14528806 - MIR SINE MIR -6 256 192 267 221 0 126 chr12 129257665 129257730 -14528725 + MIR SINE MIR 59 110 -152 2126 112 3 0 chr12 129257730 129258025 -14528430 - AluSq SINE Alu -17 296 1 267 221 0 126 chr12 129258025 129258054 -14528401 + MIR SINE MIR 110 141 -121 415 233 0 0 chr12 129259274 129259360 -14527095 - L2 LINE L2 0 3313 3228 455 257 79 7 chr12 129259450 129259602 -14526853 - MIR SINE MIR -2 260 98 465 291 0 0 chr12 129259610 129259737 -14526718 - MIR SINE MIR -31 231 105 647 282 68 13 chr12 129259749 129259983 -14526472 - MIR SINE MIR -1 261 15 58 74 0 0 chr12 129260106 129260227 -14526228 + GC_rich Low_complexity Low_complexity 1 121 0 27 29 0 0 chr12 129260283 129260317 -14526138 + GC_rich Low_complexity Low_complexity 1 34 0 997 57 0 0 chr12 129261507 129261631 -14524824 + AluSp/q SINE Alu 175 298 -15 294 229 81 70 chr12 129261809 129261980 -14524475 - L1ME4a LINE L1 -213 5908 5700 245 241 0 48 chr12 129262333 129262416 -14524039 + MIR SINE MIR 53 131 -131 2145 87 23 3 chr12 129262755 129263054 -14523401 + AluSg SINE Alu 1 305 -5 471 227 38 53 chr12 129263827 129263856 -14522599 - L2 LINE L2 0 3313 3285 2352 76 0 10 chr12 129263856 129264159 -14522296 + AluSc SINE Alu 1 300 -9 471 227 38 53 chr12 129264159 129264261 -14522194 - L2 LINE L2 -28 3285 3184 545 227 47 0 chr12 129264267 129264395 -14522060 - L2 LINE L2 0 3313 3180 239 313 12 0 chr12 129265113 129265193 -14521262 + L2 LINE L2 3194 3274 -39 1024 204 133 0 chr12 129265386 129265626 -14520829 + Charlie1b DNA MER1_type 1 272 -251 866 175 12 18 chr12 129265633 129265804 -14520651 - AluJb SINE Alu -2 310 141 2202 82 3 20 chr12 129265816 129266119 -14520336 - AluSx SINE Alu -14 298 1 264 209 134 0 chr12 129266322 129266389 -14520066 + MIR3 SINE MIR 110 185 -23 1298 75 151 33 chr12 129267759 129267971 -14518484 + AluY SINE Alu 50 286 -25 28 0 0 0 chr12 129267971 129267999 -14518456 + AT_rich Low_complexity Low_complexity 1 28 0 1895 112 11 4 chr12 129268027 129268329 -14518126 - AluSc SINE Alu 0 304 1 2307 83 0 13 chr12 129268346 129268523 -14517932 - AluY SINE Alu -2 309 136 2150 83 20 7 chr12 129268523 129268823 -14517632 - AluY SINE Alu -7 304 1 2307 83 0 13 chr12 129268823 129268958 -14517497 - AluY SINE Alu -175 136 1 933 183 17 71 chr12 129269472 129269712 -14516743 - AluJo SINE Alu -64 248 22 1815 125 40 26 chr12 129269770 129270073 -14516382 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 129270080 129270101 -14516354 + AT_rich Low_complexity Low_complexity 1 21 0 187 261 87 29 chr12 129270545 129270614 -14515841 + MIR SINE MIR 77 149 -59 2046 99 7 0 chr12 129271202 129271484 -14514971 - AluSx SINE Alu -17 295 12 2060 100 17 7 chr12 129271509 129271809 -14514646 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 129272288 129272309 -14514146 + GC_rich Low_complexity Low_complexity 1 21 0 1172 97 12 6 chr12 129272436 129272601 -14513854 + AluSg/x SINE Alu 136 301 -9 2341 62 0 0 chr12 129272610 129272900 -14513555 + AluY SINE Alu 10 299 -12 1813 144 0 14 chr12 129272907 129273213 -14513242 + AluJb SINE Alu 1 302 0 332 262 153 15 chr12 129273215 129273236 -14513219 + L1MC4a LINE L1 5798 5815 -1993 2133 91 3 41 chr12 129273236 129273554 -14512901 + AluSp SINE Alu 1 306 -7 332 262 153 15 chr12 129273554 129273734 -14512721 + L1MC4a LINE L1 5815 6027 -1781 189 343 38 19 chr12 129274796 129274901 -14511554 + L2 LINE L2 2954 3060 -212 2187 65 65 3 chr12 129275191 129275484 -14510971 + AluY SINE Alu 1 311 0 304 222 0 37 chr12 129275498 129275579 -14510876 + L1MC4a LINE L1 5793 5870 -1938 21 0 0 0 chr12 129275585 129275606 -14510849 + AT_rich Low_complexity Low_complexity 1 21 0 1909 108 0 0 chr12 129275687 129275946 -14510509 - AluSg SINE Alu -18 292 34 1170 75 7 0 chr12 129276704 129276851 -14509604 + AluSp SINE Alu 1 148 -165 221 362 32 0 chr12 129276875 129276969 -14509486 - MIR SINE MIR -92 116 20 1909 112 66 3 chr12 129277056 129277342 -14509113 + AluSg SINE Alu 1 304 -6 2078 119 0 3 chr12 129277361 129277654 -14508801 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr12 129277842 129277870 -14508585 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 129277904 129277932 -14508523 + AT_rich Low_complexity Low_complexity 1 28 0 1391 120 5 14 chr12 129278121 129278338 -14508117 - AluJo SINE Alu -94 218 4 1934 114 31 0 chr12 129278689 129278978 -14507477 - AluSx SINE Alu -14 298 1 2016 103 45 3 chr12 129279230 129279522 -14506933 - AluSx SINE Alu -8 304 1 2260 90 7 7 chr12 129280685 129280985 -14505470 + AluSc SINE Alu 1 300 -9 1990 114 3 7 chr12 129281038 129281328 -14505127 + AluSx SINE Alu 21 309 -3 303 309 102 25 chr12 129281543 129281779 -14504676 - L1ME4a LINE L1 0 6121 5868 2002 120 17 10 chr12 129282939 129283240 -14503215 - AluSx SINE Alu -9 303 1 734 154 0 32 chr12 129283240 129283447 -14503008 - AluJb SINE Alu -19 293 1 529 274 105 65 chr12 129284067 129284564 -14501891 + L2 LINE L2 2715 3270 -2 254 265 157 0 chr12 129285330 129285413 -14501042 - L2 LINE L2 -5 3308 3213 1299 69 0 0 chr12 129285413 129285572 -14500883 - AluSc SINE Alu -19 290 132 2520 53 0 0 chr12 129285572 129285873 -14500582 - AluY SINE Alu -10 301 1 262 286 0 45 chr12 129285874 129285986 -14500469 - L2 LINE L2 -93 3220 3114 309 247 55 0 chr12 129286031 129286104 -14500351 - L2 LINE L2 -1 3312 3236 2069 78 7 62 chr12 129286200 129286509 -14499946 + AluSp SINE Alu 2 293 -20 2093 94 35 0 chr12 129286509 129286797 -14499658 + AluSc SINE Alu 1 298 -11 2547 35 0 13 chr12 129286881 129287192 -14499263 + AluY SINE Alu 1 307 -4 345 238 12 0 chr12 129287237 129287317 -14499138 + L1MC/D LINE L1 5658 5738 -2070 1791 163 3 3 chr12 129287358 129287664 -14498791 + AluJb SINE Alu 1 306 -6 26 30 0 0 chr12 129287686 129287719 -14498736 + AT_rich Low_complexity Low_complexity 1 33 0 2396 71 13 0 chr12 129287732 129288041 -14498414 + AluSp SINE Alu 1 313 0 2274 99 0 10 chr12 129288105 129288418 -14498037 + AluSp SINE Alu 1 310 -3 1923 132 6 16 chr12 129288652 129288963 -14497492 + AluJb SINE Alu 1 308 -4 21 0 0 0 chr12 129289862 129289883 -14496572 + AT_rich Low_complexity Low_complexity 1 21 0 708 120 30 0 chr12 129289893 129289993 -14496462 - U6 snRNA snRNA -4 103 1 1703 178 0 3 chr12 129290002 129290300 -14496155 - AluJb SINE Alu -15 297 1 2126 104 7 3 chr12 129290305 129290594 -14495861 - AluSx SINE Alu -20 292 3 213 39 0 0 chr12 129290595 129290621 -14495834 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1925 107 44 0 chr12 129290621 129290892 -14495563 - AluSx SINE Alu -29 283 1 2154 78 3 0 chr12 129291468 129291784 -14494671 - AluSg SINE Alu 0 317 1 1792 132 64 4 chr12 129291803 129292084 -14494371 - AluJb SINE Alu -14 298 1 1383 75 0 0 chr12 129292188 129292363 -14494092 - AluSp SINE Alu -4 309 137 295 136 0 0 chr12 129292375 129292419 -14494036 + FRAM SINE Alu 77 120 -46 258 214 0 0 chr12 129292832 129292916 -14493539 + T-rich Low_complexity Low_complexity 1 84 0 237 132 0 0 chr12 129293055 129293093 -14493362 + (T)n Simple_repeat Simple_repeat 1 38 0 2445 82 0 0 chr12 129293127 129293146 -14493309 - AluSg SINE Alu -7 303 285 285 51 0 0 chr12 129293146 129293185 -14493270 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2445 82 0 0 chr12 129293185 129293468 -14492987 - AluSg SINE Alu -24 286 1 2014 122 13 23 chr12 129293609 129293912 -14492543 + AluJb SINE Alu 9 308 -4 1762 96 0 4 chr12 129293980 129294210 -14492245 + AluSg/x SINE Alu 83 311 -1 736 197 0 0 chr12 129294222 129294344 -14492111 + FLAM_C SINE Alu 5 126 -17 2348 84 10 22 chr12 129294363 129294674 -14491781 + AluSp SINE Alu 1 307 -6 2240 127 0 3 chr12 129294690 129294998 -14491457 + AluSx SINE Alu 1 307 -5 2037 122 14 0 chr12 129295379 129295673 -14490782 + AluSx SINE Alu 1 298 -14 2250 112 6 6 chr12 129295748 129296060 -14490395 + AluSq SINE Alu 1 312 -1 848 152 0 23 chr12 129296195 129296327 -14490128 - FLAM_C SINE Alu -4 129 1 2263 92 7 16 chr12 129296336 129296642 -14489813 - AluSq SINE Alu -10 303 1 2235 80 3 45 chr12 129297058 129297370 -14489085 + AluSp SINE Alu 2 300 -13 2046 126 31 0 chr12 129297430 129297724 -14488731 + AluSg SINE Alu 5 307 -3 2434 63 3 27 chr12 129297778 129298110 -14488345 + AluY SINE Alu 1 325 0 2322 84 0 0 chr12 129298113 129298397 -14488058 + AluSc SINE Alu 1 284 -25 443 225 194 0 chr12 129298417 129298546 -14487909 + L2 LINE L2 3158 3311 -2 2227 112 16 19 chr12 129298630 129298768 -14487687 + AluSx SINE Alu 1 138 -174 2429 57 20 7 chr12 129298768 129299067 -14487388 + AluSp SINE Alu 1 303 -10 2227 112 16 19 chr12 129299067 129299241 -14487214 + AluSx SINE Alu 138 312 0 1994 134 7 10 chr12 129299361 129299660 -14486795 + AluJb SINE Alu 7 304 -8 2013 154 0 0 chr12 129299681 129299973 -14486482 + AluSx SINE Alu 7 298 -14 1236 185 137 0 chr12 129299987 129300214 -14486241 + AluJo SINE Alu 40 297 -15 1714 193 10 3 chr12 129300251 129300551 -14485904 + AluSx SINE Alu 1 302 -10 226 336 138 18 chr12 129300678 129300895 -14485560 - L2 LINE L2 -227 3086 2844 2359 74 7 10 chr12 129300930 129301240 -14485215 + AluSg1 SINE Alu 1 309 0 191 289 10 0 chr12 129301327 129301397 -14485058 + MIR SINE MIR 69 141 -67 225 291 37 3 chr12 129302637 129302774 -14483681 - MIR SINE MIR -40 222 41 2090 141 0 0 chr12 129302895 129303192 -14483263 - AluSx SINE Alu -15 297 1 1840 110 110 0 chr12 129304501 129304764 -14481691 - AluSg SINE Alu -18 292 1 1862 178 24 0 chr12 129304934 129305226 -14481229 + AluJb SINE Alu 1 299 -13 2280 98 0 3 chr12 129305699 129306008 -14480447 + AluSp SINE Alu 1 308 0 931 109 14 22 chr12 129306016 129306154 -14480301 + AluSq/x SINE Alu 1 137 -175 762 77 29 10 chr12 129306297 129306401 -14480054 - AluY SINE Alu -204 107 2 411 289 26 20 chr12 129306504 129306656 -14479799 - L2 LINE L2 -201 3071 2919 2159 103 0 3 chr12 129306677 129306959 -14479496 - AluSx SINE Alu -19 293 13 2177 125 10 0 chr12 129306975 129307280 -14479175 - AluSx SINE Alu -2 310 3 1090 178 0 11 chr12 129307288 129307468 -14478987 - AluSg/x SINE Alu -1 309 132 2214 120 16 0 chr12 129307468 129307776 -14478679 - AluSp SINE Alu 0 313 1 2280 112 0 0 chr12 129307787 129308083 -14478372 - AluSx SINE Alu -16 296 1 382 274 152 10 chr12 129308374 129308571 -14477884 + MIR SINE MIR 36 260 -2 407 254 24 85 chr12 129308686 129308851 -14477604 - MIR SINE MIR -46 216 62 323 226 0 130 chr12 129308858 129308953 -14477502 - MIR SINE MIR -113 149 70 1909 148 3 3 chr12 129308953 129309251 -14477204 - AluJb SINE Alu -14 298 1 323 226 0 130 chr12 129309251 129309270 -14477185 - MIR SINE MIR -192 70 50 2311 113 0 0 chr12 129309613 129309924 -14476531 - AluY SINE Alu 0 311 1 2433 63 3 27 chr12 129309927 129310256 -14476199 - AluY SINE Alu 0 322 1 1702 164 0 64 chr12 129310310 129310640 -14475815 - AluJo SINE Alu -3 309 1 379 224 198 0 chr12 129310643 129310759 -14475696 + L2 LINE L2 2935 3073 -240 2262 108 0 0 chr12 129310975 129311271 -14475184 - AluSg SINE Alu -14 296 1 260 365 43 5 chr12 129311280 129311488 -14474967 - L1ME LINE L1 -303 5818 5603 1835 178 24 0 chr12 129311533 129311865 -14474590 - MER2 DNA MER2_type -5 340 1 1939 141 37 0 chr12 129311919 129312218 -14474237 + AluSg SINE Alu 1 310 0 316 252 38 124 chr12 129312518 129312622 -14473833 - L1ME4a LINE L1 -5 6116 6037 2081 102 34 3 chr12 129312622 129312916 -14473539 + AluSx SINE Alu 1 303 -9 316 252 38 124 chr12 129312916 129313021 -14473434 - L1ME4a LINE L1 -84 6037 5925 222 205 0 0 chr12 129313550 129313633 -14472822 + (TG)n Simple_repeat Simple_repeat 1 83 0 201 163 0 61 chr12 129313633 129313682 -14472773 + GA-rich Low_complexity Low_complexity 4 49 0 528 244 250 0 chr12 129313713 129313889 -14472566 - MIR SINE MIR 0 262 43 2173 103 7 3 chr12 129313915 129314205 -14472250 + AluSq SINE Alu 1 291 -22 2378 80 3 10 chr12 129314205 129314505 -14471950 + AluY SINE Alu 8 305 -6 186 264 0 83 chr12 129314832 129314904 -14471551 - MIR SINE MIR 0 262 197 1642 184 0 4 chr12 129315147 129315424 -14471031 - AluSx SINE Alu -36 276 1 655 330 68 4 chr12 129315492 129315728 -14470727 + MIR SINE MIR 12 262 0 297 0 0 0 chr12 129315732 129315765 -14470690 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 833 132 0 0 chr12 129315781 129315902 -14470553 - AluJo/FRAM SINE Alu -23 289 169 1068 141 0 0 chr12 129315902 129316051 -14470404 - FRAM SINE Alu -28 148 1 2596 53 0 0 chr12 129316138 129316439 -14470016 + AluY SINE Alu 1 301 -10 481 300 141 14 chr12 129316546 129316766 -14469689 + MIR SINE MIR 13 260 -2 1941 162 0 0 chr12 129316875 129317183 -14469272 + AluSx SINE Alu 1 308 -4 590 168 174 20 chr12 129317554 129317703 -14468752 + MER53 DNA DNA 1 172 -17 2186 131 3 0 chr12 129317704 129318009 -14468446 - AluSq SINE Alu -7 306 1 2217 137 0 0 chr12 129318383 129318689 -14467766 - AluSx SINE Alu -6 306 1 210 37 0 0 chr12 129318766 129318793 -14467662 + (TG)n Simple_repeat Simple_repeat 2 28 0 479 193 12 0 chr12 129319064 129319147 -14467308 - L2 LINE L2 -7 3306 3223 1735 169 4 4 chr12 129319153 129319431 -14467024 + AluSx SINE Alu 1 278 -34 360 296 177 27 chr12 129319431 129319617 -14466838 - MIR SINE MIR -21 241 28 1971 155 0 0 chr12 129319827 129320134 -14466321 - AluJb SINE Alu 0 307 1 298 259 59 24 chr12 129320162 129320247 -14466208 - L2 LINE L2 -47 3225 3138 685 134 0 0 chr12 129320267 129320364 -14466091 - AluJ/FLAM SINE Alu -215 97 1 426 265 81 10 chr12 129320383 129320532 -14465923 - MIR SINE MIR -68 194 37 253 224 282 0 chr12 129321154 129321239 -14465216 + MIR SINE MIR 35 143 -65 209 209 23 0 chr12 129321430 129321473 -14464982 + MIR3 SINE MIR 151 194 -14 693 190 44 1 chr12 129321824 129321984 -14464471 + L1ME LINE L1 5652 5820 -342 2041 101 14 38 chr12 129321992 129322280 -14464175 + AluSx SINE Alu 30 310 -2 2062 123 7 20 chr12 129322298 129322591 -14463864 + AluSx SINE Alu 11 299 -13 335 138 0 17 chr12 129322630 129322688 -14463767 - Alu SINE Alu 0 300 244 25 0 0 0 chr12 129322697 129322722 -14463733 + AT_rich Low_complexity Low_complexity 1 25 0 996 133 120 97 chr12 129322756 129322950 -14463505 + MER33 DNA MER1_type 18 206 -2379 2115 127 3 3 chr12 129322950 129323288 -14463167 - AluSx SINE Alu 0 312 1 996 133 120 97 chr12 129323288 129323357 -14463098 + MER33 DNA MER1_type 206 291 -2294 2372 64 4 0 chr12 129323357 129323637 -14462818 - AluY SINE Alu -15 296 16 996 133 120 97 chr12 129323637 129323672 -14462783 + MER33 DNA MER1_type 291 324 0 697 202 28 56 chr12 129323672 129323853 -14462602 - L1ME3 LINE L1 -110 6052 5875 1981 147 0 7 chr12 129323853 129324162 -14462293 - AluJb SINE Alu 0 307 1 697 202 28 56 chr12 129324162 129324192 -14462263 - L1ME3 LINE L1 -287 5875 5846 194 138 0 0 chr12 129324417 129324446 -14462009 - L2 LINE L2 -217 3055 3027 482 289 54 39 chr12 129324714 129324918 -14461537 - MIR SINE MIR -50 212 6 2162 67 52 0 chr12 129325026 129325293 -14461162 - AluSg SINE Alu -15 295 15 2277 87 17 7 chr12 129325320 129325620 -14460835 - AluY SINE Alu -8 303 1 2003 117 14 0 chr12 129325802 129326109 -14460346 - AluSx SINE Alu 0 311 1 2499 74 3 0 chr12 129326128 129326424 -14460031 - AluSp SINE Alu -16 297 1 2335 101 3 10 chr12 129327222 129327528 -14458927 + AluSx SINE Alu 1 304 -8 2099 112 7 0 chr12 129327532 129327826 -14458629 + AluSg SINE Alu 1 296 -14 2250 107 0 0 chr12 129327826 129328131 -14458324 + AluSx SINE Alu 1 305 0 267 234 247 0 chr12 129328324 129328401 -14458054 + MIR SINE MIR 96 191 -71 316 239 94 17 chr12 129328405 129328522 -14457933 + Charlie8 DNA MER1_type 140 265 -2152 234 0 0 0 chr12 129328850 129328876 -14457579 + (TTG)n Simple_repeat Simple_repeat 2 27 0 841 183 0 0 chr12 129328880 129329006 -14457449 - FLAM_A SINE Alu -7 126 1 841 237 36 5 chr12 129329183 129329377 -14457078 + MER105 DNA DNA 3 202 -2 1759 160 32 3 chr12 129329711 129329993 -14456462 + AluJb SINE Alu 1 290 -22 1417 150 0 52 chr12 129330005 129330238 -14456217 + AluJo SINE Alu 1 221 -91 411 298 54 24 chr12 129330362 129330530 -14455925 + MIR SINE MIR 23 195 -67 2425 97 3 0 chr12 129330530 129330841 -14455614 + AluSx SINE Alu 1 312 0 1498 153 65 7 chr12 129331013 129331288 -14455167 + AluSq SINE Alu 14 304 -9 1660 168 44 10 chr12 129331293 129331591 -14454864 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr12 129331597 129331628 -14454827 + AT_rich Low_complexity Low_complexity 1 31 0 2088 111 26 7 chr12 129331638 129331944 -14454511 + AluSx SINE Alu 1 312 0 309 159 79 0 chr12 129332688 129332751 -14453704 + L1ME4a LINE L1 6053 6120 -1 884 142 0 15 chr12 129332786 129332920 -14453535 + FLAM_C SINE Alu 1 132 -1 980 131 0 15 chr12 129332956 129333093 -14453362 + AluSq/x SINE Alu 1 135 -178 2145 103 17 0 chr12 129333093 129333394 -14453061 + AluSg SINE Alu 1 306 -4 186 43 0 0 chr12 129333399 129333422 -14453033 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 417 118 91 0 chr12 129333425 129333535 -14452920 + GA-rich Low_complexity Low_complexity 3 122 0 1910 103 85 4 chr12 129333896 129334167 -14452288 - AluSx SINE Alu -19 293 1 197 226 28 160 chr12 129335014 129335120 -14451335 + MER5A DNA MER1_type 3 94 -95 862 189 34 99 chr12 129335199 129335432 -14451023 + MER20 DNA MER1_type 1 218 -1 216 0 0 0 chr12 129335548 129335572 -14450883 + (TAA)n Simple_repeat Simple_repeat 1 24 0 289 77 0 0 chr12 129335580 129335619 -14450836 + U2 snRNA snRNA 1 39 -149 2163 98 0 17 chr12 129335624 129335921 -14450534 - AluSq SINE Alu -21 292 1 906 138 0 7 chr12 129336099 129336244 -14450211 - AluSg/x SINE Alu -2 310 167 240 35 0 0 chr12 129336351 129336380 -14450075 + (A)n Simple_repeat Simple_repeat 1 29 0 330 241 165 98 chr12 129337403 129337639 -14448816 + L2 LINE L2 3048 3299 -14 204 40 0 0 chr12 129337640 129337665 -14448790 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 212 278 0 19 chr12 129337675 129337729 -14448726 + MIR SINE MIR 16 68 -140 234 0 0 0 chr12 129337742 129337768 -14448687 + (T)n Simple_repeat Simple_repeat 1 26 0 1728 69 5 9 chr12 129337868 129338085 -14448370 - AluSx SINE Alu -96 216 1 404 40 53 66 chr12 129338117 129338193 -14448262 + AluY SINE Alu 238 312 0 238 191 0 0 chr12 129338455 129338497 -14447958 - L2 LINE L2 -85 3228 3187 2191 78 17 7 chr12 129338541 129338835 -14447620 - AluY SINE Alu -14 297 1 954 139 0 15 chr12 129338835 129338972 -14447483 - AluSq/x SINE Alu -178 135 1 881 158 0 0 chr12 129339008 129339141 -14447314 - FLAM_C SINE Alu 0 133 1 3573 170 77 1 chr12 129339353 129340041 -14446414 - Tigger6a DNA MER2_type -337 746 7 2318 78 0 3 chr12 129340041 129340367 -14446088 - AluY SINE Alu 0 325 1 316 194 30 0 chr12 129340367 129340434 -14446021 - FAM SINE Alu 0 175 107 664 71 12 0 chr12 129340534 129340619 -14445836 - AluSg SINE Alu -224 86 1 246 224 0 0 chr12 129340674 129340723 -14445732 - L2 LINE L2 0 3272 3224 486 0 0 0 chr12 129340753 129340807 -14445648 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1008 183 17 71 chr12 129340946 129341186 -14445269 - AluJo SINE Alu -64 248 22 1569 164 39 39 chr12 129341238 129341549 -14444906 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 129341556 129341577 -14444878 + AT_rich Low_complexity Low_complexity 1 21 0 885 159 0 29 chr12 129341702 129341872 -14444583 - AluSc SINE Alu -144 165 1 234 0 0 0 chr12 129341872 129341898 -14444557 + (T)n Simple_repeat Simple_repeat 1 26 0 702 202 32 0 chr12 129341931 129342055 -14444400 + FLAM_C SINE Alu 7 134 -9 2197 126 3 3 chr12 129342203 129342504 -14443951 + AluSq SINE Alu 1 301 -12 2092 122 7 3 chr12 129342504 129342808 -14443647 + AluSx SINE Alu 1 305 -7 241 261 98 11 chr12 129342825 129342917 -14443538 + MIR SINE MIR 23 122 -140 252 161 196 0 chr12 129343117 129343173 -14443282 + FRAM/FAM SINE Alu 1 61 -105 2510 84 0 0 chr12 129343340 129343638 -14442817 + AluSx SINE Alu 1 298 -14 434 294 54 39 chr12 129344046 129344250 -14442205 - MIR SINE MIR -50 212 6 1082 100 93 0 chr12 129344359 129344509 -14441946 - AluSg/x SINE Alu -15 297 134 2247 93 3 33 chr12 129344509 129344810 -14441645 - AluSq SINE Alu -21 292 1 2242 113 10 0 chr12 129344810 129345111 -14441344 - AluSx SINE Alu -8 304 1 2091 99 55 3 chr12 129345434 129345727 -14440728 - AluSx SINE Alu -4 308 1 2310 125 0 0 chr12 129345770 129346082 -14440373 - AluSx SINE Alu 0 312 1 246 133 22 0 chr12 129346140 129346185 -14440270 - L2 LINE L2 -4 3268 3223 1898 147 0 49 chr12 129346255 129346562 -14439893 - AluJo SINE Alu -20 292 1 402 325 24 0 chr12 129346615 129346738 -14439717 + MER5A DNA MER1_type 64 189 0 2093 113 33 20 chr12 129346792 129347094 -14439361 - AluSx SINE Alu -6 306 1 917 116 0 0 chr12 129347167 129347296 -14439159 - FLAM_C SINE Alu 0 133 5 368 318 11 48 chr12 129347932 129348121 -14438334 + MIR SINE MIR 13 194 -68 346 321 87 45 chr12 129348121 129348386 -14438069 - L1MC4 LINE L1 -1334 6988 1972 343 268 94 54 chr12 129348167 129348435 -14438020 + L1MC5 LINE L1 1918 8032 -209 * 183 100 0 0 chr12 129348437 129348467 -14437988 + (TG)n Simple_repeat Simple_repeat 2 31 0 1665 133 18 59 chr12 129348467 129348619 -14437836 - AluJo SINE Alu -28 284 127 245 27 54 0 chr12 129348619 129348656 -14437799 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2234 100 0 0 chr12 129348656 129348936 -14437519 - AluY SINE Alu -30 281 2 2410 94 0 22 chr12 129348941 129349259 -14437196 - AluSx SINE Alu -1 311 1 1665 133 18 59 chr12 129349259 129349385 -14437070 - AluJo SINE Alu -188 124 11 593 263 0 0 chr12 129349399 129349555 -14436900 - L1PB4 LINE L1 -1 6155 6000 1291 153 45 18 chr12 129349590 129349812 -14436643 - AluJb SINE Alu -84 228 1 243 264 11 66 chr12 129349888 129349979 -14436476 - L2 LINE L2 -36 3277 3192 2315 77 7 17 chr12 129349979 129350278 -14436177 - AluY SINE Alu -14 297 2 420 149 0 0 chr12 129350307 129350381 -14436074 + AluS SINE Alu 229 302 -7 2298 95 3 0 chr12 129350397 129350701 -14435754 - AluSp SINE Alu 0 305 1 1793 141 32 14 chr12 129350708 129350991 -14435464 - AluJo SINE Alu -24 288 1 195 129 0 0 chr12 129351213 129351244 -14435211 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1186 141 0 0 chr12 129351276 129351439 -14435016 + AluSg/x SINE Alu 134 296 -14 377 261 11 0 chr12 129351440 129351528 -14434927 - L2 LINE L2 -25 3288 3200 383 277 107 14 chr12 129351541 129351816 -14434639 - L2 LINE L2 -273 2999 2693 1432 173 0 0 chr12 129351820 129352040 -14434415 + AluJb SINE Alu 1 220 -92 243 51 0 0 chr12 129352144 129352183 -14434272 + Alu SINE Alu 259 297 -3 721 216 0 40 chr12 129352312 129352336 -14434119 - LTR54 LTR ERV1 -78 432 409 2505 93 0 0 chr12 129352336 129352647 -14433808 + AluSx SINE Alu 2 312 0 721 216 0 40 chr12 129352647 129352798 -14433657 - LTR54 LTR ERV1 -101 409 264 2195 128 0 0 chr12 129352803 129353100 -14433355 + AluSx SINE Alu 1 297 -15 847 161 40 55 chr12 129353104 129353303 -14433152 - LTR54 LTR ERV1 -312 198 3 2156 138 3 0 chr12 129353315 129353612 -14432843 + AluSq SINE Alu 1 298 -15 2338 106 3 0 chr12 129353614 129353916 -14432539 + AluSp SINE Alu 1 303 -10 1212 135 6 0 chr12 129353916 129354094 -14432361 + AluSg/x SINE Alu 132 310 0 385 310 39 7 chr12 129354100 129354255 -14432200 - L1MC/D LINE L1 -2107 5701 5542 427 153 71 0 chr12 129354812 129354897 -14431558 + HY4 scRNA scRNA 3 93 0 917 107 15 0 chr12 129354923 129355054 -14431401 + FLAM_C SINE Alu 1 133 0 571 223 69 93 chr12 129355060 129355307 -14431148 + MER102b DNA MER1_type 99 339 -2 2407 57 40 3 chr12 129356236 129356533 -14429922 - AluYa5 SINE Alu -3 308 1 1454 171 68 29 chr12 129356597 129356754 -14429701 - AluJo SINE Alu -21 291 117 2209 131 0 3 chr12 129356754 129357067 -14429388 - AluSx SINE Alu 0 312 1 1454 171 68 29 chr12 129357067 129357189 -14429266 - AluJo SINE Alu -195 117 1 1875 175 3 0 chr12 129357256 129357542 -14428913 + AluJb SINE Alu 1 287 -25 2457 63 13 7 chr12 129358160 129358462 -14427993 + AluY SINE Alu 1 304 -7 1634 167 78 11 chr12 129358473 129358755 -14427700 + AluJo SINE Alu 3 303 -9 2247 112 3 0 chr12 129358884 129359171 -14427284 + AluSq SINE Alu 2 289 -24 24 0 0 0 chr12 129361898 129361922 -14424533 + AT_rich Low_complexity Low_complexity 1 24 0 258 115 96 19 chr12 129363103 129363155 -14423300 + MER45 DNA AcHobo 1526 1581 0 242 267 249 34 chr12 129363525 129363710 -14422745 + MIR SINE MIR 34 252 -10 803 165 0 0 chr12 129363908 129364041 -14422414 + FLAM_C SINE Alu 1 133 0 2286 88 41 0 chr12 129364088 129364382 -14422073 + AluSp SINE Alu 1 306 -7 25 31 0 0 chr12 129364664 129364696 -14421759 + AT_rich Low_complexity Low_complexity 1 32 0 2231 61 0 29 chr12 129364745 129365023 -14421432 + AluY SINE Alu 1 270 -41 2069 120 6 46 chr12 129365128 129365453 -14421002 - AluSx SINE Alu 0 312 1 2290 99 7 0 chr12 129365479 129365772 -14420683 - AluSx SINE Alu -17 295 1 1082 159 129 8 chr12 129365801 129366065 -14420390 + AluJb SINE Alu 2 297 -5 216 247 11 21 chr12 129366873 129366966 -14419489 + (CGG)n Simple_repeat Simple_repeat 2 93 0 240 226 0 57 chr12 129367119 129367225 -14419230 + C-rich Low_complexity Low_complexity 3 102 0 696 168 7 54 chr12 129368233 129368382 -14418073 - FLAM_C SINE Alu 0 143 2 2200 103 0 10 chr12 129368424 129368724 -14417731 - AluSp SINE Alu -16 297 1 3273 143 54 13 chr12 129368915 129368961 -14417494 + L1MB5 LINE L1 5486 5529 -645 1416 227 5 42 chr12 129368961 129369030 -14417425 - MLT1A1 LTR MaLR 0 365 295 2096 141 0 0 chr12 129369030 129369336 -14417119 + AluSx SINE Alu 1 306 -6 1416 227 5 42 chr12 129369336 129369645 -14416810 - MLT1A1 LTR MaLR -70 295 1 3273 143 54 13 chr12 129369645 129370193 -14416262 + L1MB5 LINE L1 5529 6104 -70 604 215 256 18 chr12 129370193 129370416 -14416039 + MLT1G1 LTR MaLR 313 588 -7 594 273 79 63 chr12 129370747 129370948 -14415507 + L2 LINE L2 2933 3143 -129 2246 89 4 0 chr12 129370948 129371253 -14415202 - AluSq SINE Alu 0 306 1 594 273 79 63 chr12 129371253 129371365 -14415090 + L2 LINE L2 3143 3252 -20 1921 146 3 36 chr12 129371650 129371958 -14414497 + AluJb SINE Alu 1 298 -14 2201 98 0 7 chr12 129371965 129372252 -14414203 + AluSg SINE Alu 1 285 -25 492 255 7 21 chr12 129372276 129372417 -14414038 + MIR SINE MIR 13 151 -111 1972 141 0 17 chr12 129372418 129372715 -14413740 + AluJo SINE Alu 1 292 -20 456 307 153 0 chr12 129372744 129372920 -14413535 - MIR SINE MIR -58 204 2 191 246 70 35 chr12 129372977 129373034 -14413421 + MIR SINE MIR 77 135 -73 905 110 0 0 chr12 129373698 129373816 -14412639 + FLAM_C SINE Alu 1 118 -25 618 236 231 5 chr12 129373839 129374047 -14412408 - MIR SINE MIR 0 262 8 309 301 62 0 chr12 129374121 129374234 -14412221 + MIR SINE MIR 81 200 -62 2213 121 7 3 chr12 129374258 129374564 -14411891 - AluJo SINE Alu -5 307 1 427 153 71 0 chr12 129374589 129374674 -14411781 - HY4 scRNA scRNA 0 93 3 386 323 39 7 chr12 129375231 129375386 -14411069 + L1MC/D LINE L1 5542 5701 -2107 1212 135 6 0 chr12 129375392 129375570 -14410885 - AluSg/x SINE Alu 0 310 132 2348 106 3 0 chr12 129375570 129375872 -14410583 - AluSp SINE Alu -10 303 1 2135 141 3 0 chr12 129375874 129376171 -14410284 - AluSq SINE Alu -15 298 1 847 161 40 55 chr12 129376183 129376382 -14410073 + LTR54 LTR ERV1 3 198 -312 2195 128 0 0 chr12 129376386 129376683 -14409772 - AluSx SINE Alu -15 297 1 632 211 0 34 chr12 129376687 129376834 -14409621 + LTR54 LTR ERV1 264 405 -105 2530 43 40 3 chr12 129376838 129377138 -14409317 - AluY SINE Alu 0 311 1 1454 171 68 29 chr12 129377202 129377359 -14409096 - AluJo SINE Alu -21 291 117 2192 134 0 3 chr12 129377359 129377672 -14408783 - AluSx SINE Alu 0 312 1 1454 171 68 29 chr12 129377672 129377794 -14408661 - AluJo SINE Alu -195 117 1 1875 175 3 0 chr12 129377861 129378147 -14408308 + AluJb SINE Alu 1 287 -25 2457 63 13 7 chr12 129378765 129379067 -14407388 + AluY SINE Alu 1 304 -7 1646 167 78 11 chr12 129379078 129379360 -14407095 + AluJo SINE Alu 3 303 -9 2269 108 3 0 chr12 129379489 129379776 -14406679 + AluSq SINE Alu 2 289 -24 24 0 0 0 chr12 129382503 129382527 -14403928 + AT_rich Low_complexity Low_complexity 1 24 0 466 118 0 0 chr12 129383331 129383399 -14403056 - AluS SINE Alu -244 69 2 468 159 8 24 chr12 129383401 129383527 -14402928 + MER113 DNA MER1_type? 121 244 -277 201 250 73 116 chr12 129384002 129384059 -14402396 + MIR SINE MIR 79 137 -125 2014 99 4 0 chr12 129384059 129384322 -14402133 - AluSx SINE Alu -1 311 48 201 250 73 116 chr12 129384322 129384428 -14402027 + MIR SINE MIR 137 235 -27 715 278 86 0 chr12 129384435 129384644 -14401811 - MIR SINE MIR -8 254 28 820 293 40 8 chr12 129385529 129385782 -14400673 + MIR SINE MIR 2 262 0 1119 167 9 53 chr12 129385804 129386031 -14400424 - MER20 DNA MER1_type 0 219 3 689 249 82 44 chr12 129386415 129386607 -14399848 - L2 LINE L2 -1 3312 3104 2264 94 3 13 chr12 129386607 129386905 -14399550 + AluSx SINE Alu 1 295 -17 689 249 82 44 chr12 129386905 129387005 -14399450 - L2 LINE L2 -209 3104 3009 * 1827 186 88 39 chr12 129387003 129387515 -14398940 - L2 LINE L2 -618 2696 2160 286 263 40 0 chr12 129387523 129387599 -14398856 - L2 LINE L2 -2 3270 3192 2283 111 0 3 chr12 129387717 129388024 -14398431 - AluSp SINE Alu -6 307 2 636 327 82 13 chr12 129388025 129388401 -14398054 - L2 LINE L2 -2 3311 2910 522 228 18 41 chr12 129388954 129389125 -14397330 + LTR4 LTR ERV1 390 556 -40 1751 93 0 32 chr12 129389128 129389374 -14397081 + AluY SINE Alu 74 311 0 2448 74 3 0 chr12 129389382 129389680 -14396775 + AluY SINE Alu 1 299 -12 1838 153 10 20 chr12 129389885 129390185 -14396270 + AluJo SINE Alu 3 299 -13 440 280 161 25 chr12 129390609 129390792 -14395663 - L1ME4a LINE L1 -1 6120 5963 1902 177 0 3 chr12 129390792 129391097 -14395358 - AluJo SINE Alu -8 304 1 440 280 161 25 chr12 129391097 129391125 -14395330 - L1ME4a LINE L1 -158 5963 5940 2304 83 0 0 chr12 129391125 129391403 -14395052 + AluSg1 SINE Alu 25 302 -7 440 280 161 25 chr12 129391403 129391433 -14395022 - L1ME4a LINE L1 -181 5940 5845 762 236 11 17 chr12 129391434 129391608 -14394847 - AluJo SINE Alu -24 288 116 2163 104 17 20 chr12 129391615 129391914 -14394541 + AluSx SINE Alu 1 298 -14 270 255 11 53 chr12 129391921 129392015 -14394440 - L1ME4a LINE L1 -341 5780 5691 318 249 55 109 chr12 129392032 129392197 -14394258 - L1ME4a LINE L1 -1 6120 5965 2909 231 125 25 chr12 129392266 129393276 -14393179 + L2 LINE L2 1429 2539 -775 2201 132 0 0 chr12 129393302 129393597 -14392858 - AluSg SINE Alu -15 295 1 258 167 0 0 chr12 129393597 129393645 -14392810 - FAM SINE Alu -7 172 125 1187 107 6 17 chr12 129393645 129393822 -14392633 - AluJo SINE Alu -101 211 37 686 219 16 44 chr12 129393834 129394017 -14392438 - L1M4 LINE L1 -1321 4825 4648 2442 78 0 0 chr12 129394033 129394328 -14392127 + AluY SINE Alu 1 295 -16 744 188 0 88 chr12 129394353 129394513 -14391942 - FAM SINE Alu -36 149 4 235 209 45 73 chr12 129394556 129394642 -14391813 - MER34 LTR ERV1 -5 537 453 874 180 6 12 chr12 129394642 129394809 -14391646 + FRAM SINE Alu 1 166 0 235 209 45 73 chr12 129394809 129394832 -14391623 - MER34 LTR ERV1 -89 453 431 1502 195 146 74 chr12 129394842 129395410 -14391045 + MER21B LTR ERV1 146 754 -109 2471 63 7 0 chr12 129395596 129395896 -14390559 + AluY SINE Alu 1 302 -9 260 263 171 0 chr12 129396244 129396320 -14390135 + L2 LINE L2 3203 3291 -22 514 273 24 69 chr12 129396862 129397096 -14389359 + L2 LINE L2 2858 3075 -197 2114 100 52 3 chr12 129397160 129397475 -14388980 - AluSp SINE Alu 0 329 1 830 151 0 8 chr12 129397498 129397617 -14388838 + FLAM_C SINE Alu 1 118 -15 1962 135 0 17 chr12 129397890 129398186 -14388269 - AluSx SINE Alu -21 291 1 614 67 0 0 chr12 129398197 129398272 -14388183 - Alu SINE Alu -12 298 224 891 163 208 0 chr12 129398281 129398483 -14387972 + MSTA LTR MaLR 185 428 0 837 224 30 6 chr12 129398504 129398669 -14387786 + FAM SINE Alu 1 169 -6 2050 120 0 23 chr12 129398700 129399022 -14387433 + AluSq SINE Alu 1 313 0 2398 59 0 40 chr12 129399026 129399330 -14387125 + AluY SINE Alu 1 292 -19 326 310 116 30 chr12 129399332 129399434 -14387021 - HAL1 LINE L1 -343 2164 2072 2352 110 3 3 chr12 129399434 129399744 -14386711 - AluSq SINE Alu -3 310 1 326 310 116 30 chr12 129399744 129399774 -14386681 - HAL1 LINE L1 -435 2072 2046 1730 154 13 39 chr12 129399774 129400085 -14386370 + AluJb SINE Alu 1 303 -9 326 310 116 30 chr12 129400085 129400183 -14386272 - HAL1 LINE L1 -461 2046 1913 269 134 134 0 chr12 129400202 129400284 -14386171 - AluSc SINE Alu -3 296 204 3232 173 84 2 chr12 129400395 129401025 -14385430 - Tigger6a DNA MER2_type -401 682 1 2096 149 0 0 chr12 129401029 129401337 -14385118 - AluSx SINE Alu 0 312 5 263 269 71 99 chr12 129402040 129402181 -14384274 + L2 LINE L2 3136 3272 0 2312 115 0 0 chr12 129402212 129402516 -14383939 - AluSx SINE Alu -8 304 1 2060 146 3 0 chr12 129404184 129404485 -14381970 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr12 129404632 129404655 -14381800 + AT_rich Low_complexity Low_complexity 1 23 0 1370 265 90 20 chr12 129404882 129405369 -14381086 + LTR33 LTR ERVL 1 521 0 2348 109 3 0 chr12 129405426 129405729 -14380726 + AluSg SINE Alu 1 304 -6 266 304 108 20 chr12 129405996 129406098 -14380357 - L2 LINE L2 -4 3309 3199 1673 190 11 3 chr12 129406128 129406412 -14380043 + AluJo SINE Alu 1 286 -26 1524 153 11 46 chr12 129407348 129407472 -14378983 + AluJb SINE Alu 22 149 -163 2225 101 3 7 chr12 129407472 129407778 -14378677 + AluSx SINE Alu 1 305 -7 1524 153 11 46 chr12 129407778 129407935 -14378520 + AluJb SINE Alu 149 293 -19 277 255 160 65 chr12 129408302 129408426 -14378029 - MIR SINE MIR -16 246 94 2290 102 0 7 chr12 129408426 129408731 -14377724 - AluSq SINE Alu -10 303 1 277 255 160 65 chr12 129408731 129408806 -14377649 - MIR SINE MIR -168 94 28 380 121 30 15 chr12 129408918 129408984 -14377471 + MIR SINE MIR 78 144 -64 2293 72 0 3 chr12 129408991 129409283 -14377172 + AluY SINE Alu 1 291 -20 1044 110 7 14 chr12 129409303 129409449 -14377006 + FRAM SINE Alu 12 156 -20 2409 89 0 0 chr12 129409451 129409744 -14376711 + AluSc SINE Alu 1 293 -16 238 314 23 0 chr12 129409785 129409871 -14376584 - L2 LINE L2 -4 3309 3222 255 31 0 0 chr12 129410484 129410516 -14375939 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 236 220 0 0 chr12 129410593 129410643 -14375812 - MIR SINE MIR -81 127 78 1496 267 39 33 chr12 129410662 129411140 -14375315 - L2 LINE L2 0 3313 2838 2090 119 10 3 chr12 129411140 129411434 -14375021 + AluSx SINE Alu 1 296 -16 1496 267 39 33 chr12 129411434 129411563 -14374892 - L2 LINE L2 -475 2838 2711 216 0 0 0 chr12 129411580 129411604 -14374851 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 2263 99 7 0 chr12 129412139 129412423 -14374032 - AluSx SINE Alu -26 286 1 887 302 0 28 chr12 129412423 129412678 -14373777 + MIR SINE MIR 3 250 -12 1771 164 45 11 chr12 129412809 129413096 -14373359 - AluJo SINE Alu -15 297 1 222 315 0 15 chr12 129413132 129413204 -14373251 - MIR SINE MIR -54 154 83 435 258 25 33 chr12 129413705 129413825 -14372630 + MIR SINE MIR 19 137 -71 * 440 252 0 29 chr12 129413819 129413922 -14372533 - L2 LINE L2 0 3313 3214 910 155 108 0 chr12 129413924 129414072 -14372383 - AluJb SINE Alu -12 300 137 572 282 213 17 chr12 129414072 129414420 -14372035 - L2 LINE L2 -89 3224 2809 200 284 0 68 chr12 129414555 129414643 -14371812 + C-rich Low_complexity Low_complexity 1 82 0 208 227 193 57 chr12 129415225 129415313 -14371142 + MIR SINE MIR 3 102 -160 244 304 54 18 chr12 129415588 129415700 -14370755 + L2 LINE L2 3153 3268 -4 1804 141 0 11 chr12 129415708 129415970 -14370485 + AluJb SINE Alu 1 259 -53 1896 137 50 63 chr12 129415970 129416197 -14370258 - THE1C LTR MaLR 0 375 152 1941 128 3 28 chr12 129416197 129416515 -14369940 + AluJo SINE Alu 2 312 0 1896 137 50 63 chr12 129416515 129416666 -14369789 - THE1C LTR MaLR -223 152 1 1660 164 69 45 chr12 129416668 129416724 -14369731 + L1MB5 LINE L1 5779 5832 -342 2322 126 0 0 chr12 129416724 129417033 -14369422 + AluSx SINE Alu 3 311 -1 1660 164 69 45 chr12 129417033 129417310 -14369145 + L1MB5 LINE L1 5832 6124 -50 2189 133 0 16 chr12 129417310 129417627 -14368828 - AluSx SINE Alu 0 312 1 1660 164 69 45 chr12 129417627 129417669 -14368786 + L1MB5 LINE L1 6124 6164 -10 2207 94 21 0 chr12 129417815 129418101 -14368354 + AluSg SINE Alu 6 297 -13 266 127 0 48 chr12 129418209 129418272 -14368183 - L1M4 LINE L1 -1481 4665 4606 996 122 0 0 chr12 129418274 129418405 -14368050 - FLAM_C SINE Alu -2 131 1 1434 180 82 54 chr12 129418406 129418811 -14367644 - L1M4 LINE L1 -1724 4422 4007 * 1831 207 73 52 chr12 129418808 129419153 -14367302 + L1ME2 LINE L1 4672 5037 -1109 1862 176 0 39 chr12 129419153 129419460 -14366995 + AluJo SINE Alu 1 295 -17 1831 207 73 52 chr12 129419460 129419743 -14366712 + L1ME2 LINE L1 5037 5313 -833 2022 162 35 31 chr12 129419744 129420293 -14366162 - MLT2A2 LTR ERVL 0 554 1 41359 84 7 10 chr12 129420293 129425755 -14360700 - HERVL-A2-A2 LTR ERVL 0 5654 179 2277 74 25 0 chr12 129425755 129426038 -14360417 - AluSc SINE Alu -19 290 1 41359 84 7 10 chr12 129426038 129426202 -14360253 - HERVL-A2-A2 LTR ERVL -5475 179 41 2361 92 0 29 chr12 129426202 129426517 -14359938 + AluSq SINE Alu 1 306 -7 41359 84 7 10 chr12 129426517 129426558 -14359897 - HERVL-A2-A2 LTR ERVL -5613 41 1 2047 162 36 33 chr12 129426558 129427108 -14359347 - MLT2A2 LTR ERVL 0 554 1 2434 189 16 6 chr12 129427117 129427625 -14358830 + L1ME2 LINE L1 5317 5829 -335 1461 116 0 46 chr12 129427628 129427844 -14358611 + AluJo SINE Alu 1 206 -106 670 106 0 0 chr12 129427844 129427929 -14358526 - AluS SINE Alu -221 91 7 2181 98 0 4 chr12 129428018 129428295 -14358160 + AluSx SINE Alu 19 294 -18 2336 99 10 0 chr12 129428301 129428603 -14357852 + AluSc SINE Alu 1 305 -4 510 206 29 0 chr12 129428615 129428717 -14357738 + MIR SINE MIR 47 151 -111 2210 110 0 0 chr12 129428820 129429131 -14357324 - AluSx SINE Alu 0 311 1 1365 225 104 20 chr12 129429168 129429335 -14357120 + MLT1F LTR MaLR 3 155 -387 2193 119 23 0 chr12 129429335 129429637 -14356818 - AluSc SINE Alu 0 309 1 2317 104 0 7 chr12 129429637 129429944 -14356511 - AluSx SINE Alu -7 305 1 1365 225 104 20 chr12 129429944 129430131 -14356324 + MLT1F LTR MaLR 154 388 -154 1316 109 5 0 chr12 129430157 129430349 -14356106 - L1MA2 LINE L1 0 6304 6112 2171 117 13 3 chr12 129430349 129430641 -14355814 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr12 129430641 129430668 -14355787 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 2171 117 13 3 chr12 129430668 129430683 -14355772 + AluSx SINE Alu 298 311 -1 314 163 19 31 chr12 129430699 129430779 -14355676 - L1MA2 LINE L1 -167 6138 6058 1445 136 5 32 chr12 129430785 129431006 -14355449 - AluJb SINE Alu -12 300 86 731 140 84 21 chr12 129431050 129431193 -14355262 + MLT1F LTR MaLR 389 540 -2 790 288 114 13 chr12 129431286 129431521 -14354934 + LTR33 LTR ERVL 8 218 -303 2230 113 33 0 chr12 129431521 129431823 -14354632 - AluSx SINE Alu 0 312 1 790 288 114 13 chr12 129431823 129432042 -14354413 + LTR33 LTR ERVL 218 508 -13 1427 128 0 72 chr12 129432074 129432191 -14354264 + AluJo SINE Alu 1 92 -220 2684 42 3 3 chr12 129432191 129432497 -14353958 - AluSp SINE Alu -7 306 1 1427 128 0 72 chr12 129432497 129432629 -14353826 + AluJo SINE Alu 92 232 -80 225 54 0 0 chr12 129433195 129433232 -14353223 - L1MB3 LINE L1 0 6183 6147 1257 110 0 42 chr12 129433449 129433640 -14352815 + AluSg/x SINE Alu 130 312 0 831 250 26 0 chr12 129434117 129434309 -14352146 + MIR SINE MIR 10 206 -56 1820 124 38 4 chr12 129434357 129434651 -14351804 + AluSx SINE Alu 10 312 0 280 318 118 9 chr12 129434691 129434801 -14351654 - MIR SINE MIR -116 146 25 269 297 49 1 chr12 129434978 129435068 -14351387 + MIR SINE MIR 64 155 -60 316 269 0 0 chr12 129435220 129435298 -14351157 - L2 LINE L2 -348 2966 2889 448 221 47 127 chr12 129435367 129435480 -14350975 - L2 LINE L2 0 3313 3223 2173 123 13 3 chr12 129435480 129435789 -14350666 - AluSx SINE Alu 0 312 1 448 221 47 127 chr12 129435789 129435888 -14350567 - L2 LINE L2 -90 3223 3118 * 743 269 75 18 chr12 129435881 129436108 -14350347 - MIR SINE MIR 0 262 23 547 265 104 23 chr12 129436126 129436372 -14350083 - L2 LINE L2 -247 3066 2803 544 252 94 1 chr12 129436914 129437056 -14349399 + MIR SINE MIR 38 189 -63 237 192 39 0 chr12 129437069 129437121 -14349334 + L1ME3 LINE L1 6017 6070 -92 2041 91 0 0 chr12 129437151 129437405 -14349050 + AluSq SINE Alu 11 264 -49 2489 72 0 3 chr12 129437499 129437803 -14348652 - AluY SINE Alu -8 303 1 269 246 155 82 chr12 129437983 129438190 -14348265 + L2 LINE L2 2311 2532 -782 2071 153 3 0 chr12 129438260 129438567 -14347888 + AluSx SINE Alu 1 308 -4 1102 127 7 0 chr12 129438626 129438803 -14347652 + AluSp SINE Alu 137 314 0 1331 147 50 56 chr12 129438804 129439080 -14347375 + L1MB5 LINE L1 5049 5326 -858 2260 110 7 0 chr12 129439080 129439380 -14347075 + AluSq SINE Alu 1 302 -11 1331 147 50 56 chr12 129439380 129439536 -14346919 + L1MB5 LINE L1 5326 5481 -703 2337 101 0 0 chr12 129440192 129440490 -14345965 + AluSx SINE Alu 1 298 -14 3200 143 54 14 chr12 129440490 129440529 -14345926 + L1MB5 LINE L1 5493 5529 -645 1529 211 13 50 chr12 129440529 129440598 -14345857 - MLT1A1 LTR MaLR 0 365 295 2066 144 0 0 chr12 129440598 129440904 -14345551 + AluSx SINE Alu 1 306 -6 1529 211 13 50 chr12 129440904 129441213 -14345242 - MLT1A1 LTR MaLR -70 295 1 3200 143 54 14 chr12 129441213 129441761 -14344694 + L1MB5 LINE L1 5529 6104 -70 567 215 256 18 chr12 129441761 129441984 -14344471 + MLT1G1 LTR MaLR 313 588 -7 683 248 90 74 chr12 129442315 129442516 -14343939 + L2 LINE L2 2933 3143 -129 2206 92 4 0 chr12 129442516 129442821 -14343634 - AluSq SINE Alu 0 306 1 683 248 90 74 chr12 129442821 129442929 -14343526 + L2 LINE L2 3143 3248 -24 1913 146 3 36 chr12 129443218 129443526 -14342929 + AluJb SINE Alu 1 298 -14 2187 98 0 7 chr12 129443533 129443820 -14342635 + AluSg SINE Alu 1 285 -25 526 255 7 21 chr12 129443844 129443985 -14342470 + MIR SINE MIR 13 151 -111 1964 141 0 17 chr12 129443986 129444283 -14342172 + AluJo SINE Alu 1 292 -20 767 163 0 8 chr12 129444158 129444287 -14342168 + AluJo/FRAM SINE Alu 169 296 -16 493 273 153 0 chr12 129444312 129444488 -14341967 - MIR SINE MIR -58 204 2 206 208 75 38 chr12 129444549 129444602 -14341853 + MIR SINE MIR 81 135 -73 840 110 0 0 chr12 129445266 129445384 -14341071 + FLAM_C SINE Alu 1 118 -25 676 212 241 10 chr12 129445407 129445610 -14340845 - MIR SINE MIR 0 262 13 320 266 80 18 chr12 129445689 129445802 -14340653 + MIR SINE MIR 81 200 -62 2056 121 7 3 chr12 129445826 129446132 -14340323 - AluJo SINE Alu -5 307 1 1371 151 161 74 chr12 129446175 129446351 -14340104 - MLT1A1 LTR MaLR -4 361 202 1913 145 0 20 chr12 129446351 129446655 -14339800 - AluSx SINE Alu -14 298 1 1371 151 161 74 chr12 129446655 129446802 -14339653 - MLT1A1 LTR MaLR -163 202 10 857 215 69 73 chr12 129446965 129447159 -14339296 + MIR SINE MIR 5 200 -62 2154 80 3 7 chr12 129447159 129447473 -14338982 - AluSq SINE Alu 0 313 1 857 215 69 73 chr12 129447473 129447523 -14338932 + MIR SINE MIR 200 249 -13 375 303 56 25 chr12 129447539 129447701 -14338754 - L1MC/D LINE L1 -2049 5759 5593 373 282 246 0 chr12 129448140 129448335 -14338120 + MIR SINE MIR 8 250 -12 1866 135 10 0 chr12 129448377 129448673 -14337782 + AluSx SINE Alu 1 299 -13 1903 92 27 0 chr12 129448673 129448966 -14337489 + AluY SINE Alu 1 301 -10 1693 74 55 0 chr12 129449644 129449901 -14336554 + AluSx SINE Alu 18 288 -24 192 111 0 0 chr12 129449968 129450004 -14336451 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 451 333 44 0 chr12 129450005 129450188 -14336267 - MIR SINE MIR -21 241 51 215 276 263 0 chr12 129450288 129450364 -14336091 + MIR SINE MIR 49 144 -118 363 326 17 6 chr12 129450752 129450924 -14335531 + L1ME3 LINE L1 5657 5830 -291 655 96 10 39 chr12 129450938 129450955 -14335500 + AluSq SINE Alu 120 136 -177 1786 121 62 0 chr12 129450955 129451245 -14335210 + AluSx SINE Alu 1 308 -4 655 96 10 39 chr12 129451245 129451331 -14335124 + AluSq SINE Alu 136 220 -93 818 230 23 9 chr12 129451346 129451563 -14334892 + L1ME3 LINE L1 5918 6137 -25 24 67 0 0 chr12 129451577 129451622 -14334833 + AT_rich Low_complexity Low_complexity 1 45 0 446 158 158 33 chr12 129451633 129451753 -14334702 - Charlie1 DNA MER1_type -5 2756 2622 * 903 189 142 14 chr12 129451739 129451951 -14334504 - Charlie1 DNA MER1_type -2522 239 1 259 211 133 11 chr12 129451961 129452051 -14334404 + L1ME4a LINE L1 5967 6067 -54 1593 112 43 14 chr12 129453741 129454017 -14332438 - AluSx SINE Alu -17 295 12 1866 125 17 0 chr12 129455059 129455346 -14331109 - AluSx SINE Alu -20 292 1 1782 97 43 0 chr12 129455563 129455842 -14330613 + AluY SINE Alu 1 291 -20 200 95 0 71 chr12 129457336 129457378 -14329077 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 584 289 46 23 chr12 129457455 129457628 -14328827 + MIR SINE MIR 10 186 -76 280 242 110 22 chr12 129457901 129457992 -14328463 + MER117 DNA MER1_type 99 197 0 1760 108 49 24 chr12 129458720 129459007 -14327448 - AluSq SINE Alu -19 294 1 2295 83 0 3 chr12 129459020 129459321 -14327134 - AluSp SINE Alu -13 300 1 966 175 28 6 chr12 129459839 129460016 -14326439 + MSTB1 LTR MaLR 3 183 -249 1108 151 88 29 chr12 129460196 129460434 -14326021 + MSTB1 LTR MaLR 181 432 0 921 243 187 42 chr12 129460451 129461005 -14325450 + L1MC4 LINE L1 7281 8040 -2 189 0 0 0 chr12 129461043 129461064 -14325391 + (A)n Simple_repeat Simple_repeat 1 21 0 1980 106 0 18 chr12 129461064 129461347 -14325108 + AluSq SINE Alu 1 278 -35 252 0 0 0 chr12 129461351 129461379 -14325076 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2203 92 7 0 chr12 129461599 129461903 -14324552 + AluY SINE Alu 1 306 -5 191 256 0 0 chr12 129462236 129462275 -14324180 + L2 LINE L2 3239 3277 -36 2130 110 7 0 chr12 129463480 129463780 -14322675 + AluSx SINE Alu 1 302 -10 1815 102 25 7 chr12 129463780 129464054 -14322401 + AluY SINE Alu 1 279 -32 180 0 0 0 chr12 129464054 129464074 -14322381 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2094 109 3 22 chr12 129464127 129464440 -14322015 + AluSx SINE Alu 1 307 -5 207 193 275 55 chr12 129464502 129464611 -14321844 + MIR3 SINE MIR 12 144 -64 1906 96 7 73 chr12 129464688 129465012 -14321443 + AluSp SINE Alu 1 304 0 691 158 110 27 chr12 129465055 129465201 -14321254 + FRAM SINE Alu 1 155 -21 2116 120 0 0 chr12 129465203 129465503 -14320952 + AluSx SINE Alu 1 300 -12 1618 158 56 3 chr12 129465719 129466003 -14320452 - AluJb SINE Alu -13 299 1 201 213 0 0 chr12 129466069 129466116 -14320339 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 2154 112 0 0 chr12 129466260 129466556 -14319899 - AluSg SINE Alu -14 296 1 356 334 75 27 chr12 129466559 129466767 -14319688 - L1ME LINE L1 -353 5811 5597 1942 148 0 0 chr12 129467198 129467496 -14318959 - AluJb SINE Alu -14 298 1 371 206 156 43 chr12 129468248 129468389 -14318066 - MIR SINE MIR -25 237 81 1216 168 141 19 chr12 129469360 129469622 -14316833 - AluJb SINE Alu -18 294 1 1154 66 33 0 chr12 129471250 129471402 -14315053 + L1P4 LINE L1 5532 5688 -475 2192 113 3 0 chr12 129471402 129471712 -14314743 + AluSp SINE Alu 1 311 -2 1717 56 72 16 chr12 129471720 129471971 -14314484 + L1PA13 LINE L1 5896 6160 -3 338 271 233 6 chr12 129472239 129472430 -14314025 + MIR SINE MIR 34 262 0 417 285 36 29 chr12 129472444 129472581 -14313874 + MER5A DNA MER1_type 1 138 -51 2222 104 0 7 chr12 129473522 129473831 -14312624 + AluSq SINE Alu 1 307 -6 1473 154 37 34 chr12 129473903 129473988 -14312467 + AluSx SINE Alu 7 90 -222 1934 131 27 3 chr12 129473988 129474286 -14312169 + AluSq SINE Alu 1 305 -8 2192 112 0 0 chr12 129474294 129474597 -14311858 + AluSc SINE Alu 1 303 -6 1473 154 37 34 chr12 129474597 129474800 -14311655 + AluSx SINE Alu 96 305 -7 296 172 17 0 chr12 129474801 129474859 -14311596 + FLAM SINE Alu 73 131 -2 31 0 0 0 chr12 129474888 129474919 -14311536 + AT_rich Low_complexity Low_complexity 1 31 0 216 99 70 42 chr12 129474919 129474990 -14311465 + (TTAA)n Simple_repeat Simple_repeat 2 74 0 311 180 0 0 chr12 129474992 129475042 -14311413 + Alu SINE Alu 238 287 -13 2061 90 7 10 chr12 129475108 129475398 -14311057 + AluSx SINE Alu 3 291 -21 41 36 0 0 chr12 129475398 129475453 -14311002 + AT_rich Low_complexity Low_complexity 1 55 0 482 263 11 37 chr12 129475658 129475848 -14310607 - L1M4 LINE L1 -1077 5069 4885 247 388 35 9 chr12 129475935 129476051 -14310404 + L2 LINE L2 3107 3225 -47 195 42 0 0 chr12 129476866 129476890 -14309565 + (T)n Simple_repeat Simple_repeat 1 24 0 1536 77 39 0 chr12 129476897 129477105 -14309350 - AluY SINE Alu -95 216 1 1471 88 0 37 chr12 129477140 129477357 -14309098 - AluY SINE Alu -29 282 74 500 249 24 35 chr12 129477360 129477529 -14308926 - LTR4 LTR ERV1 -40 556 390 1932 130 3 0 chr12 129477817 129478116 -14308339 - AluSq SINE Alu -13 300 1 400 253 151 7 chr12 129478255 129478401 -14308054 - MIR SINE MIR -50 212 46 1736 144 34 7 chr12 129478404 129478702 -14307753 - AluSx SINE Alu -6 306 1 1724 158 10 0 chr12 129479094 129479386 -14307069 + AluJo SINE Alu 1 295 -17 367 149 60 0 chr12 129479443 129479510 -14306945 - FLAM_A SINE Alu -1 132 62 671 156 244 0 chr12 129479564 129479699 -14306756 - AluJb SINE Alu -11 301 134 187 277 169 0 chr12 129480321 129480386 -14306069 + MIR SINE MIR 187 262 0 27 0 0 0 chr12 129482483 129482510 -14303945 + AT_rich Low_complexity Low_complexity 1 27 0 722 192 16 0 chr12 129482516 129482641 -14303814 - FLAM_A SINE Alu -6 127 1 286 397 82 9 chr12 129483126 129483358 -14303097 + MIR SINE MIR 8 256 -6 275 216 0 0 chr12 129483403 129483454 -14303001 + L3b LINE CR1 1526 1576 -7 510 241 159 12 chr12 129483518 129483688 -14302767 + MIR SINE MIR 68 262 0 27 0 0 0 chr12 129484004 129484031 -14302424 + AT_rich Low_complexity Low_complexity 1 27 0 1459 160 31 21 chr12 129484538 129484825 -14301630 + AluJo SINE Alu 8 297 -15 2278 72 21 0 chr12 129484914 129485204 -14301251 - AluY SINE Alu -15 296 1 2175 88 10 0 chr12 129486045 129486351 -14300104 - AluY SINE Alu -2 309 1 288 206 89 98 chr12 129486453 129486485 -14299970 - L1ME4a LINE L1 -188 5933 5902 2092 89 4 0 chr12 129486485 129486806 -14299649 - AluSg SINE Alu 0 322 1 288 206 89 98 chr12 129486806 129486887 -14299568 - L1ME4a LINE L1 -219 5902 5822 2193 78 4 0 chr12 129486887 129487197 -14299258 - AluY SINE Alu 0 311 1 288 206 89 98 chr12 129487197 129487294 -14299161 - L1ME4a LINE L1 -299 5822 5722 484 227 13 129 chr12 129487437 129487487 -14298968 + MIR SINE MIR 63 117 -145 778 163 0 15 chr12 129487487 129487622 -14298833 - FLAM_A SINE Alu 0 133 1 484 227 13 129 chr12 129487622 129487796 -14298659 + MIR SINE MIR 117 261 -1 374 239 0 80 chr12 129487814 129487850 -14298605 - L1ME4a LINE L1 -477 5644 5607 2104 83 45 3 chr12 129487850 129488140 -14298315 - AluSg SINE Alu -8 302 1 374 239 0 80 chr12 129488140 129488216 -14298239 - L1ME4a LINE L1 -514 5607 5541 442 258 94 8 chr12 129488387 129488515 -14297940 - MIR SINE MIR -42 220 82 1687 146 14 31 chr12 129488515 129488809 -14297646 + AluJo SINE Alu 1 289 -23 232 310 0 28 chr12 129488862 129488933 -14297522 - MIR SINE MIR -190 72 4 712 142 0 0 chr12 129489198 129489304 -14297151 - FLAM_A SINE Alu -16 126 21 192 97 0 0 chr12 129489332 129489363 -14297092 + (GA)n Simple_repeat Simple_repeat 2 32 0 945 110 0 0 chr12 129489767 129489894 -14296561 - AluJb SINE Alu -185 127 1 2234 82 0 3 chr12 129490088 129490382 -14296073 - AluSc SINE Alu -14 295 3 592 158 0 0 chr12 129490711 129490806 -14295649 - AluSg/x SINE Alu 0 309 215 1694 83 0 0 chr12 129490862 129491078 -14295377 + AluSc SINE Alu 29 244 -65 207 0 0 0 chr12 129491422 129491445 -14295010 + (A)n Simple_repeat Simple_repeat 1 23 0 606 308 10 29 chr12 129491461 129491798 -14294657 + AluSg SINE Alu 5 335 0 1854 136 0 33 chr12 129492432 129492734 -14293721 - AluSx SINE Alu -20 292 1 1657 191 24 6 chr12 129492737 129493067 -14293388 - L1ME2 LINE L1 -335 5829 5494 436 129 29 0 chr12 129493168 129493238 -14293217 - Tigger6 DNA MER2_type -1519 78 7 222 91 0 0 chr12 129493238 129493271 -14293184 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 375 301 86 72 chr12 129493271 129493348 -14293107 + L1ME LINE L1 5567 5641 -480 2281 80 0 3 chr12 129493348 129493649 -14292806 - AluY SINE Alu -11 300 1 375 301 86 72 chr12 129493649 129493780 -14292675 + L1ME LINE L1 5641 5778 -343 258 175 175 10 chr12 129493960 129494057 -14292398 + L1ME4a LINE L1 6008 6120 -1 438 242 83 23 chr12 129494887 129495019 -14291436 - L2 LINE L2 -192 3080 2941 966 174 41 23 chr12 129495022 129495150 -14291305 + AluJ SINE Alu 2 135 -177 2319 110 7 3 chr12 129495150 129495460 -14290995 + AluSx SINE Alu 2 312 0 966 174 41 23 chr12 129495460 129495503 -14290952 + AluJ SINE Alu 135 176 -136 569 96 0 0 chr12 129495504 129495577 -14290878 - AluJ/FLAM SINE Alu -228 84 12 981 153 0 7 chr12 129495578 129495722 -14290733 + AluJ SINE Alu 154 296 -16 1429 147 0 0 chr12 129495839 129496043 -14290412 + AluJb SINE Alu 84 287 -25 21 36 0 0 chr12 129496168 129496196 -14290259 + AT_rich Low_complexity Low_complexity 1 28 0 722 53 0 80 chr12 129496209 129496322 -14290133 + L1PB1 LINE L1 6046 6149 -2 1068 194 15 5 chr12 129497269 129497475 -14288980 + MER3 DNA MER1_type 2 209 0 229 194 0 0 chr12 129497577 129497613 -14288842 + L2 LINE L2 3268 3303 -10 29 28 0 0 chr12 129498047 129498083 -14288372 + AT_rich Low_complexity Low_complexity 1 36 0 2439 77 3 3 chr12 129498349 129498648 -14287807 - AluSp SINE Alu -12 301 3 2375 113 3 0 chr12 129498656 129498967 -14287488 - AluSx SINE Alu 0 312 1 297 233 86 78 chr12 129499085 129499201 -14287254 - L2 LINE L2 -1 3271 3155 1488 159 111 0 chr12 129499221 129499326 -14287129 + AluJo SINE Alu 1 93 -219 248 49 49 0 chr12 129499326 129499367 -14287088 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1488 159 111 0 chr12 129499367 129499531 -14286924 + AluJo SINE Alu 93 300 -12 2076 111 31 14 chr12 129499541 129499830 -14286625 - AluSq SINE Alu -19 294 1 2307 123 3 0 chr12 129499835 129500145 -14286310 - AluSq SINE Alu -1 312 2 1283 144 32 86 chr12 129500154 129500275 -14286180 - AluJo SINE Alu -49 263 137 1846 148 10 17 chr12 129500275 129500572 -14285883 - AluJo SINE Alu -17 295 1 1283 144 32 86 chr12 129500572 129500728 -14285727 - AluJo SINE Alu -175 137 1 347 276 0 20 chr12 129500745 129500843 -14285612 - MER5B DNA MER1_type 0 178 83 2218 118 10 0 chr12 129501224 129501521 -14284934 + AluSx SINE Alu 1 300 -12 1712 185 24 0 chr12 129501621 129501908 -14284547 + AluJo SINE Alu 2 295 -17 2473 86 0 0 chr12 129501908 129502212 -14284243 + AluY SINE Alu 1 304 -7 615 184 0 0 chr12 129502237 129502340 -14284115 + FRAM SINE Alu 56 158 -18 2512 76 0 0 chr12 129502340 129502643 -14283812 + AluY SINE Alu 1 303 -8 2364 97 0 7 chr12 129502918 129503228 -14283227 + AluSp SINE Alu 1 308 -5 348 236 3 53 chr12 129503696 129503809 -14282646 + MER5B DNA MER1_type 3 107 -82 930 141 0 7 chr12 129503811 129503946 -14282509 + AluJb SINE Alu 1 134 -178 225 247 0 124 chr12 129503950 129504001 -14282454 + MER5B DNA MER1_type 94 129 -49 1550 134 17 0 chr12 129504001 129504232 -14282223 + AluSg SINE Alu 61 295 -15 225 247 0 124 chr12 129504232 129504277 -14282178 + MER5B DNA MER1_type 129 178 0 389 306 27 41 chr12 129504828 129504975 -14281480 + MIR SINE MIR 90 234 -28 2083 78 0 4 chr12 129506471 129506728 -14279727 - AluSx SINE Alu -56 256 1 1396 135 111 32 chr12 129506748 129507000 -14279455 - AluJo SINE Alu -18 294 23 1611 178 13 23 chr12 129507630 129507933 -14278522 - AluJo SINE Alu -12 300 1 236 288 15 0 chr12 129508232 129508298 -14278157 + MIR SINE MIR 195 261 -1 23 54 0 0 chr12 129508451 129508488 -14277967 + AT_rich Low_complexity Low_complexity 1 37 0 423 281 131 25 chr12 129508747 129508946 -14277509 + MIR SINE MIR 3 222 -40 284 269 7 28 chr12 129509221 129509362 -14277093 + (CGG)n Simple_repeat Simple_repeat 1 138 0 22 0 0 0 chr12 129509556 129509578 -14276877 + GC_rich Low_complexity Low_complexity 1 22 0 193 29 59 0 chr12 129509808 129509842 -14276613 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2557 44 7 0 chr12 129510050 129510347 -14276108 - AluY SINE Alu -12 299 1 1079 150 0 90 chr12 129510572 129510805 -14275650 + AluJo SINE Alu 9 220 -92 371 138 0 0 chr12 129510805 129510863 -14275592 + AluSq/x SINE Alu 86 143 -159 875 179 0 52 chr12 129510910 129511083 -14275372 + AluJo SINE Alu 121 284 -28 834 169 139 6 chr12 129511093 129511345 -14275110 - LTR54 LTR ERV1 -163 347 1 713 177 0 0 chr12 129511396 129511509 -14274946 + FLAM_A SINE Alu 16 128 -14 209 313 30 0 chr12 129511509 129511576 -14274879 - MIR SINE MIR -123 139 71 2293 107 0 7 chr12 129511650 129511958 -14274497 + AluSg SINE Alu 1 306 -4 2280 89 0 7 chr12 129512029 129512321 -14274134 + AluSg SINE Alu 21 310 0 639 174 91 0 chr12 129512333 129512454 -14274001 + AluSq/x SINE Alu 2 133 -180 1791 187 14 0 chr12 129512613 129512902 -14273553 + AluJb SINE Alu 1 293 -19 451 53 0 0 chr12 129512924 129512981 -14273474 + AluSg/x SINE Alu 80 136 -173 1990 126 50 0 chr12 129512981 129513258 -14273197 + AluSx SINE Alu 2 292 -20 2065 124 3 0 chr12 129513448 129513770 -14272685 - AluSx SINE Alu 0 323 1 312 283 96 36 chr12 129514378 129514544 -14271911 + MER5A DNA MER1_type 4 179 -10 2361 58 31 7 chr12 129515251 129515542 -14270913 - AluSq SINE Alu -15 298 1 628 239 101 55 chr12 129515570 129515808 -14270647 - MIR SINE MIR -2 260 12 1465 107 0 0 chr12 129515822 129516048 -14270407 - AluSq SINE Alu 0 313 104 2505 60 0 22 chr12 129516048 129516363 -14270092 - AluY SINE Alu 0 311 4 993 162 138 16 chr12 129516491 129516686 -14269769 - Tigger6 DNA MER2_type 0 1597 1363 2055 123 23 23 chr12 129516686 129516995 -14269460 + AluSx SINE Alu 1 309 -3 993 162 138 16 chr12 129516995 129517052 -14269403 - Tigger6 DNA MER2_type -234 1363 1314 2185 103 7 3 chr12 129517052 129517343 -14269112 + AluY SINE Alu 1 292 -19 2295 92 0 26 chr12 129517345 129517650 -14268805 + AluSp SINE Alu 1 297 -16 2198 123 0 0 chr12 129517659 129517952 -14268503 + AluSx SINE Alu 1 293 -19 1047 110 0 0 chr12 129518800 129518936 -14267519 + AluSq/x SINE Alu 1 136 -177 2195 109 3 7 chr12 129518936 129519239 -14267216 + AluY SINE Alu 1 302 -9 2302 86 16 20 chr12 129519437 129519741 -14266714 + AluY SINE Alu 1 303 -8 2338 106 0 16 chr12 129519752 129520063 -14266392 + AluSg SINE Alu 1 306 -4 2246 104 0 17 chr12 129520692 129520989 -14265466 - AluSx SINE Alu -20 292 1 614 67 0 0 chr12 129521000 129521075 -14265380 - Alu SINE Alu -12 297 223 913 158 208 0 chr12 129521084 129521286 -14265169 + MSTA LTR MaLR 185 428 0 837 224 30 6 chr12 129521307 129521472 -14264983 + FAM SINE Alu 1 169 -6 2220 114 3 13 chr12 129521503 129521811 -14264644 + AluSq SINE Alu 1 305 -8 1806 193 0 0 chr12 129521820 129522120 -14264335 + AluJb SINE Alu 5 304 -8 2280 91 3 25 chr12 129522206 129522524 -14263931 + AluY SINE Alu 1 311 0 353 288 188 12 chr12 129522555 129522715 -14263740 + L2 LINE L2 138 325 -2989 376 212 227 0 chr12 129522733 129522865 -14263590 + L2 LINE L2 635 796 -2518 426 198 71 24 chr12 129522871 129522997 -14263458 + MER3 DNA MER1_type 39 123 -86 232 228 184 18 chr12 129522964 129523078 -14263377 + MER3 DNA MER1_type 2448 2580 0 * 2926 246 241 44 chr12 129523096 129523288 -14263167 + L2 LINE L2 819 972 -2341 2051 138 0 0 chr12 129523288 129523605 -14262850 - AluSx SINE Alu 0 317 1 2926 246 241 44 chr12 129523605 129524138 -14262317 + L2 LINE L2 972 1399 -1914 2392 59 3 40 chr12 129524138 129524460 -14261995 + AluY SINE Alu 1 310 -1 2926 246 241 44 chr12 129524460 129525514 -14260941 + L2 LINE L2 1399 2244 -1069 1597 164 58 15 chr12 129525514 129525788 -14260667 + AluJo SINE Alu 1 286 -26 2926 246 241 44 chr12 129525788 129525953 -14260502 + L2 LINE L2 2244 3127 -186 478 236 75 25 chr12 129525971 129526170 -14260285 - L1MC/D LINE L1 -2015 5793 5585 2221 93 14 3 chr12 129527269 129527558 -14258897 + AluSq SINE Alu 1 292 -21 2433 64 0 39 chr12 129527616 129527928 -14258527 + AluY SINE Alu 1 300 -11 270 261 189 31 chr12 129527999 129528290 -14258165 - L1ME4a LINE L1 -98 6023 5687 1777 178 7 0 chr12 129528440 129528732 -14257723 - AluJb SINE Alu -18 294 1 753 180 23 0 chr12 129528737 129528865 -14257590 - FLAM_C SINE Alu 0 133 3 2132 98 13 30 chr12 129528865 129529170 -14257285 - AluSg SINE Alu -10 300 1 2296 86 16 20 chr12 129529181 129529485 -14256970 - AluY SINE Alu -8 303 1 2193 112 3 7 chr12 129529683 129529987 -14256468 - AluY SINE Alu -8 303 1 1107 96 0 0 chr12 129529987 129530123 -14256332 - AluSq/x SINE Alu -177 136 1 523 237 92 26 chr12 129530160 129530312 -14256143 + MLT1F LTR MaLR 3 164 -378 2310 110 3 22 chr12 129530320 129530638 -14255817 - AluSx SINE Alu 0 312 1 1234 170 0 39 chr12 129530638 129530867 -14255588 - AluSg/x SINE Alu -7 305 86 731 140 84 21 chr12 129530911 129531054 -14255401 + MLT1F LTR MaLR 389 540 -2 790 288 114 13 chr12 129531147 129531382 -14255073 + LTR33 LTR ERVL 8 218 -303 2230 113 33 0 chr12 129531382 129531684 -14254771 - AluSx SINE Alu 0 312 1 790 288 114 13 chr12 129531684 129531903 -14254552 + LTR33 LTR ERVL 218 508 -13 898 123 0 8 chr12 129531935 129532065 -14254390 + FLAM_C SINE Alu 1 129 -4 2557 44 7 0 chr12 129532857 129533154 -14253301 - AluY SINE Alu -12 299 1 1079 150 0 90 chr12 129533379 129533612 -14252843 + AluJo SINE Alu 9 220 -92 371 138 0 0 chr12 129533612 129533670 -14252785 + AluSq/x SINE Alu 86 143 -159 841 184 0 87 chr12 129533717 129533924 -14252531 + AluJo SINE Alu 121 309 -3 834 169 149 6 chr12 129533924 129534158 -14252297 - LTR54 LTR ERV1 -181 329 1 713 177 0 0 chr12 129534209 129534322 -14252133 + FLAM_A SINE Alu 16 128 -14 209 313 30 0 chr12 129534322 129534389 -14252066 - MIR SINE MIR -123 139 71 2277 110 0 7 chr12 129534463 129534771 -14251684 + AluSg SINE Alu 1 306 -4 2280 89 0 7 chr12 129534842 129535134 -14251321 + AluSg SINE Alu 21 310 0 640 174 91 0 chr12 129535146 129535267 -14251188 + AluSq/x SINE Alu 2 133 -180 1791 187 14 0 chr12 129535426 129535715 -14250740 + AluJb SINE Alu 1 293 -19 451 53 0 0 chr12 129535737 129535794 -14250661 + AluSg/x SINE Alu 80 136 -173 1958 130 50 0 chr12 129535794 129536071 -14250384 + AluSx SINE Alu 2 292 -20 2065 124 3 0 chr12 129536261 129536579 -14249876 - AluSx SINE Alu 0 319 1 324 307 78 18 chr12 129537187 129537353 -14249102 + MER5A DNA MER1_type 4 179 -10 2128 105 14 0 chr12 129538060 129538354 -14248101 - AluSq SINE Alu -15 298 1 434 291 73 41 chr12 129538354 129538435 -14248020 - L1ME4a LINE L1 -219 5902 5825 2299 82 4 0 chr12 129538435 129538745 -14247710 - AluY SINE Alu 0 311 1 434 291 73 41 chr12 129538745 129538882 -14247573 - L1ME4a LINE L1 -296 5825 5676 488 227 13 129 chr12 129538985 129539035 -14247420 + MIR SINE MIR 63 117 -145 796 163 0 15 chr12 129539035 129539170 -14247285 - FLAM_A SINE Alu 0 133 1 488 227 13 129 chr12 129539170 129539344 -14247111 + MIR SINE MIR 117 261 -1 354 239 0 80 chr12 129539362 129539398 -14247057 - L1ME4a LINE L1 -477 5644 5607 2243 80 45 3 chr12 129539398 129539686 -14246769 - AluSg SINE Alu -10 300 1 354 239 0 80 chr12 129539686 129539762 -14246693 - L1ME4a LINE L1 -514 5607 5541 448 243 16 138 chr12 129539933 129540061 -14246394 - MIR SINE MIR -42 220 135 1832 150 13 30 chr12 129540061 129540361 -14246094 + AluJo SINE Alu 1 295 -17 448 243 16 138 chr12 129540361 129540479 -14245976 - MIR SINE MIR -127 135 4 725 142 0 0 chr12 129540744 129540850 -14245605 - FLAM_A SINE Alu -16 126 21 192 97 0 0 chr12 129540878 129540909 -14245546 + (GA)n Simple_repeat Simple_repeat 2 32 0 1008 110 0 0 chr12 129541313 129541440 -14245015 - AluJb SINE Alu -185 127 1 2357 85 0 3 chr12 129541634 129541929 -14244526 - AluSc SINE Alu -13 296 3 598 158 0 0 chr12 129542258 129542353 -14244102 - AluSg/x SINE Alu 0 310 216 2081 90 4 4 chr12 129542409 129542677 -14243778 + AluSc SINE Alu 29 296 -13 307 216 148 11 chr12 129542677 129542765 -14243690 - L1MC/D LINE L1 -2000 5808 5709 729 210 0 40 chr12 129542806 129542830 -14243625 - LTR54 LTR ERV1 -78 432 409 2482 97 0 0 chr12 129542830 129543141 -14243314 + AluSx SINE Alu 2 312 0 729 210 0 40 chr12 129543141 129543292 -14243163 - LTR54 LTR ERV1 -101 409 264 1369 179 54 0 chr12 129543296 129543576 -14242879 + AluSx SINE Alu 1 295 -17 520 186 0 0 chr12 129543909 129543995 -14242460 - FRAM/FAM SINE Alu -86 90 5 2259 100 3 0 chr12 129544072 129544361 -14242094 + AluSg SINE Alu 1 290 -20 2077 111 34 10 chr12 129544363 129544660 -14241795 + AluY SINE Alu 3 306 -5 2682 34 0 0 chr12 129544909 129545203 -14241252 + AluY SINE Alu 1 294 -17 1962 160 0 0 chr12 129545444 129545737 -14240718 - AluSx SINE Alu -15 297 5 2545 44 3 0 chr12 129546119 129546412 -14240043 - AluY SINE Alu -17 294 1 1890 113 3 7 chr12 129547459 129547741 -14238714 - AluSx SINE Alu -18 294 14 1807 107 0 15 chr12 129547767 129548037 -14238418 - AluSg1 SINE Alu -8 301 36 1481 163 14 37 chr12 129548137 129548432 -14238023 - AluJb SINE Alu -24 288 1 1345 118 5 0 chr12 129548462 129548649 -14237806 + AluSx SINE Alu 1 188 -124 231 111 0 28 chr12 129548649 129548685 -14237770 - AluJo/FLAM SINE Alu -140 161 127 644 161 15 51 chr12 129548687 129548824 -14237631 - AluJo/FLAM SINE Alu -170 132 1 1910 112 0 18 chr12 129548828 129549135 -14237320 - AluSq SINE Alu 0 313 14 409 197 0 0 chr12 129549207 129549278 -14237177 + AluJ/FRAM SINE Alu 228 298 -4 211 300 24 0 chr12 129549872 129549965 -14236490 - MIR SINE MIR -83 125 30 826 189 0 18 chr12 129550137 129550301 -14236154 + FRAM SINE Alu 12 172 -4 370 299 73 51 chr12 129550305 129550663 -14235792 + LTR16A LTR ERVL 56 452 -12 1877 138 7 0 chr12 129550830 129551113 -14235342 + AluJo SINE Alu 7 291 -21 1987 104 7 4 chr12 129551121 129551401 -14235054 + AluSp SINE Alu 1 281 -32 515 190 58 99 chr12 129551704 129551811 -14234644 + HAL1 LINE L1 1162 1272 -1235 1836 155 3 7 chr12 129551811 129552108 -14234347 + AluJo SINE Alu 1 296 -16 515 190 58 99 chr12 129552108 129552242 -14234213 + HAL1 LINE L1 1272 1393 -1114 2208 88 0 19 chr12 129552562 129552870 -14233585 - AluSx SINE Alu -10 302 1 300 261 76 25 chr12 129553212 129553369 -14233086 - MER77 LTR ERV1 -31 574 410 2271 50 0 53 chr12 129553532 129553852 -14232603 - AluY SINE Alu -8 303 1 32 0 0 0 chr12 129554142 129554174 -14232281 + AT_rich Low_complexity Low_complexity 1 32 0 907 228 31 110 chr12 129554190 129554429 -14232026 - L1ME3 LINE L1 -33 6129 5873 2117 98 0 3 chr12 129554429 129554716 -14231739 - AluSg SINE Alu -24 286 1 907 228 31 110 chr12 129554716 129554736 -14231719 - L1ME3 LINE L1 -289 5873 5853 607 199 7 44 chr12 129554736 129554872 -14231583 - FLAM_A SINE Alu -2 131 1 907 228 31 110 chr12 129554872 129554992 -14231463 - L1ME3 LINE L1 -309 5853 5779 2290 91 0 0 chr12 129555258 129555565 -14230890 - AluSg SINE Alu -3 307 1 641 177 113 0 chr12 129555766 129555890 -14230565 + MLT1E1 LTR MaLR 447 584 -70 1457 186 19 16 chr12 129555897 129556208 -14230247 - AluJo SINE Alu 0 312 1 814 152 8 0 chr12 129556213 129556345 -14230110 - AluJo SINE Alu -178 134 2 1387 124 44 8 chr12 129556830 129557079 -14229376 - L1MA4 LINE L1 0 6300 6043 1564 154 20 27 chr12 129557079 129557250 -14229205 - AluSx SINE Alu -12 300 130 1945 140 0 3 chr12 129557250 129557558 -14228897 - AluSq SINE Alu -6 307 1 1564 154 20 27 chr12 129557558 129557685 -14228770 - AluSx SINE Alu -182 130 4 1587 160 31 7 chr12 129557710 129558004 -14228451 - AluJo SINE Alu -10 302 2 469 326 50 71 chr12 129558208 129558631 -14227824 - L2 LINE L2 0 3272 2859 494 183 0 29 chr12 129558796 129558971 -14227484 + C-rich Low_complexity Low_complexity 1 170 0 683 86 0 96 chr12 129558984 129559341 -14227114 + (C)n Simple_repeat Simple_repeat 1 322 0 64 14 0 0 chr12 129559341 129559412 -14227043 + GC_rich Low_complexity Low_complexity 1 71 0 223 64 0 141 chr12 129559412 129559490 -14226965 + (C)n Simple_repeat Simple_repeat 1 67 0 46 16 0 16 chr12 129559491 129559543 -14226912 + GC_rich Low_complexity Low_complexity 1 53 -10 207 0 0 0 chr12 129559543 129559566 -14226889 + (C)n Simple_repeat Simple_repeat 1 23 0 46 16 0 16 chr12 129559566 129559577 -14226878 + GC_rich Low_complexity Low_complexity 53 63 0 1947 62 4 0 chr12 129560122 129560364 -14226091 - L1PA6 LINE L1 -3 6151 5909 860 76 0 8 chr12 129560365 129560483 -14225972 + L1PA6 LINE L1 5792 5908 -246 1216 140 25 10 chr12 129561713 129561913 -14224542 - MER3 DNA MER1_type -4 205 3 302 267 86 52 chr12 129561916 129562032 -14224423 + MIR SINE MIR 4 123 -139 2195 102 3 0 chr12 129562032 129562336 -14224119 - AluSx SINE Alu -7 305 1 354 307 220 4 chr12 129562355 129562596 -14223859 - L3 LINE CR1 -296 1281 989 959 182 6 0 chr12 129562622 129562781 -14223674 + MER5A DNA MER1_type 29 188 -1 611 328 80 15 chr12 129562920 129563246 -14223209 - L3 LINE CR1 -774 803 457 234 0 0 0 chr12 129563864 129563890 -14222565 + (A)n Simple_repeat Simple_repeat 1 26 0 647 276 129 25 chr12 129565816 129566185 -14220270 - MLT1J2 LTR MaLR 0 446 34 6445 85 4 42 chr12 129566770 129567781 -14218674 + L1P LINE L1 2785 3757 -2389 380 243 0 0 chr12 129567901 129567975 -14218480 - L1MB3 LINE L1 -55 6128 6055 918 88 0 0 chr12 129567975 129568100 -14218355 - AluSg/x SINE Alu -4 306 182 1659 120 79 4 chr12 129568367 129568634 -14217821 - AluSq SINE Alu -26 287 1 6050 168 21 4 chr12 129569175 129570228 -14216227 - Tigger1 DNA MER2_type -1283 1135 65 22 0 0 0 chr12 129570415 129570437 -14216018 + AT_rich Low_complexity Low_complexity 1 22 0 712 315 22 9 chr12 129570729 129570961 -14215494 - MIR SINE MIR 0 262 28 33 25 0 0 chr12 129572408 129572448 -14214007 + AT_rich Low_complexity Low_complexity 1 40 0 236 301 32 41 chr12 129572467 129572590 -14213865 + L2 LINE L2 3165 3286 -27 333 0 0 0 chr12 129572590 129572627 -14213828 + (TG)n Simple_repeat Simple_repeat 2 38 0 258 153 0 0 chr12 129572627 129572686 -14213769 + GA-rich Low_complexity Low_complexity 2 60 0 247 261 225 9 chr12 129572689 129572800 -14213655 + L2 LINE L2 3178 3312 -1 5689 50 3 30 chr12 129573808 129574544 -14211911 - L1PA7 LINE L1 -3 6151 5436 489 50 0 0 chr12 129574544 129574604 -14211851 + L1P LINE L1 5365 5424 -748 709 246 23 6 chr12 129575574 129575749 -14210706 - AluJo SINE Alu -13 299 122 360 278 101 25 chr12 129575803 129576001 -14210454 - L1 LINE L1 -2368 3778 3566 185 222 0 48 chr12 129576365 129576428 -14210027 - L2 LINE L2 -1099 2215 2156 21 0 0 0 chr12 129577804 129577825 -14208630 + GC_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr12 129578195 129578223 -14208232 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 988 196 16 0 chr12 129578359 129578543 -14207912 - MER58A DNA MER1_type 0 224 38 864 183 75 21 chr12 129578568 129578809 -14207646 - Charlie5 DNA MER1_type -27 2585 2332 1998 123 7 3 chr12 129579442 129579744 -14206711 - AluSg SINE Alu -7 303 1 1998 117 21 0 chr12 129580797 129581087 -14205368 + AluSx SINE Alu 4 299 -13 29 0 0 0 chr12 129581088 129581117 -14205338 + AT_rich Low_complexity Low_complexity 1 29 0 2208 90 3 3 chr12 129581290 129581591 -14204864 - AluSc SINE Alu -8 301 1 2462 65 7 0 chr12 129582260 129582569 -14203886 - AluY SINE Alu 0 311 1 982 243 42 28 chr12 129582776 129583060 -14203395 + L2 LINE L2 2931 3218 -95 215 167 19 19 chr12 129583656 129583710 -14202745 + (CCG)n Simple_repeat Simple_repeat 2 55 0 22 56 0 0 chr12 129583876 129583912 -14202543 + GC_rich Low_complexity Low_complexity 1 36 0 195 139 0 0 chr12 129583960 129583996 -14202459 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 23 0 0 0 chr12 129584034 129584057 -14202398 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 129584160 129584183 -14202272 + GC_rich Low_complexity Low_complexity 1 23 0 331 343 88 15 chr12 129585272 129585476 -14200979 + MIR SINE MIR 3 221 -41 2188 105 0 0 chr12 129586342 129586648 -14199807 - AluSg SINE Alu -4 306 1 316 271 104 0 chr12 129586732 129586828 -14199627 - MIR SINE MIR -69 193 88 1670 151 3 50 chr12 129587016 129587333 -14199122 - AluSx SINE Alu -9 303 2 1511 162 63 0 chr12 129587345 129587629 -14198826 - AluJb SINE Alu -10 302 1 385 193 68 0 chr12 129587804 129587892 -14198563 + L1MC5 LINE L1 7820 7913 -48 2163 93 13 7 chr12 129588048 129588349 -14198106 - AluSx SINE Alu -8 304 2 207 311 68 48 chr12 129588422 129588525 -14197930 + L2 LINE L2 3149 3253 -19 271 285 44 66 chr12 129589153 129589290 -14197165 - MIR SINE MIR -128 134 1 381 293 193 14 chr12 129589290 129589502 -14196953 + L2 LINE L2 2587 2836 -478 1708 141 36 46 chr12 129589623 129589929 -14196526 - AluSx SINE Alu -9 303 1 2315 59 0 0 chr12 129590230 129590517 -14195938 - AluY SINE Alu -24 287 1 2020 130 0 17 chr12 129591164 129591465 -14194990 - AluSg SINE Alu -14 296 1 276 250 33 75 chr12 129592120 129592240 -14194215 + MIR SINE MIR 98 212 -50 2067 110 7 0 chr12 129592513 129592813 -14193642 - AluSq SINE Alu -11 302 1 1940 110 0 3 chr12 129592984 129593299 -14193156 - AluSx SINE Alu 0 314 1 2096 104 3 3 chr12 129593614 129593921 -14192534 - AluSp SINE Alu -6 307 1 273 320 158 45 chr12 129594065 129594578 -14191877 - L2 LINE L2 -1102 2212 1642 1664 64 0 0 chr12 129594591 129594794 -14191661 - AluY SINE Alu -108 203 1 2427 63 0 0 chr12 129594961 129595264 -14191191 - AluY SINE Alu -8 303 1 26 0 0 0 chr12 129597177 129597203 -14189252 + AT_rich Low_complexity Low_complexity 1 26 0 2382 76 0 7 chr12 129597351 129597652 -14188803 - AluSc SINE Alu -10 299 1 2223 109 0 10 chr12 129597692 129597995 -14188460 - AluSp SINE Alu -12 301 2 821 245 55 91 chr12 129598218 129598677 -14187778 - MLT1H LTR MaLR 0 549 1 2018 134 0 17 chr12 129598846 129599144 -14187311 + AluSx SINE Alu 1 293 -19 3421 172 40 40 chr12 129599146 129599584 -14186871 - L1MB8 LINE L1 -17 6161 5721 2143 117 0 0 chr12 129599584 129599865 -14186590 + AluSx SINE Alu 1 281 -31 3421 172 40 40 chr12 129599865 129600166 -14186289 - L1MB8 LINE L1 -456 5722 5422 759 139 263 53 chr12 129600616 129600731 -14185724 - MER33 DNA MER1_type -2263 322 233 1825 103 103 0 chr12 129600731 129600983 -14185472 + AluSg SINE Alu 17 294 -16 759 139 263 53 chr12 129600983 129601133 -14185322 - MER33 DNA MER1_type -2352 233 1 23 0 0 0 chr12 129601799 129601822 -14184633 + AT_rich Low_complexity Low_complexity 1 23 0 2208 86 41 0 chr12 129601822 129602112 -14184343 + AluSp SINE Alu 1 302 -11 292 237 17 0 chr12 129602201 129602260 -14184195 + Charlie8 DNA MER1_type 1368 1427 -990 275 236 50 50 chr12 129603227 129603367 -14183088 - L1ME4a LINE L1 -11 6110 5971 23 0 0 0 chr12 129603396 129603419 -14183036 + AT_rich Low_complexity Low_complexity 1 23 0 2385 90 3 0 chr12 129603841 129604141 -14182314 - AluSp SINE Alu -12 301 1 504 234 107 40 chr12 129604180 129604466 -14181989 - L1ME3 LINE L1 -221 5945 5626 346 256 101 105 chr12 129604463 129604625 -14181830 - L1ME3 LINE L1 -1005 5141 4978 * 2337 70 0 7 chr12 129604625 129604938 -14181517 - AluY SINE Alu 0 311 1 346 256 101 105 chr12 129604938 129605032 -14181423 - L1ME3 LINE L1 -1168 4978 4885 714 217 14 7 chr12 129605069 129605212 -14181243 - FRAM SINE Alu -31 145 2 825 117 69 21 chr12 129605522 129605667 -14180788 - L1MB3 LINE L1 -8 6175 6024 515 102 125 11 chr12 129605667 129605755 -14180700 - Tigger7 DNA MER2_type -1 2486 2389 * 1134 211 73 40 chr12 129605753 129606000 -14180455 - Tigger7 DNA MER2_type -2220 267 13 3667 172 34 56 chr12 129606003 129606462 -14179993 - L1MB3 LINE L1 -144 6039 5572 2215 111 10 0 chr12 129606462 129606768 -14179687 - AluSx SINE Alu -1 311 3 3667 172 34 56 chr12 129606768 129607158 -14179297 - L1MB3 LINE L1 -611 5572 5223 2136 102 3 20 chr12 129607158 129607452 -14179003 - AluY SINE Alu -22 289 1 3667 172 34 56 chr12 129607452 129607733 -14178722 - L1MB3 LINE L1 -960 5223 4937 280 260 170 20 chr12 129608133 129608299 -14178156 - MIR SINE MIR -58 204 18 387 279 25 8 chr12 129608315 129608437 -14178018 - MER103 DNA DNA -7 159 36 2482 84 3 0 chr12 129608820 129609128 -14177327 - AluSp SINE Alu -4 309 1 1113 124 19 6 chr12 129609924 129610085 -14176370 - AluSg/x SINE Alu -13 297 135 3087 212 113 61 chr12 129610086 129610149 -14176306 - L1MB3 LINE L1 -2291 3855 3797 2332 106 3 0 chr12 129610149 129610461 -14175994 - AluSq SINE Alu 0 313 1 3087 212 113 61 chr12 129610461 129611116 -14175339 - L1MB3 LINE L1 -2349 3797 3177 294 29 0 0 chr12 129611116 129611151 -14175304 + (TG)n Simple_repeat Simple_repeat 2 36 0 3087 212 113 61 chr12 129611151 129611314 -14175141 - L1MB3 LINE L1 -2969 3177 3024 2601 63 0 13 chr12 129611314 129611629 -14174826 - AluY SINE Alu 0 311 1 3087 212 113 61 chr12 129611629 129611920 -14174535 - L1MB3 LINE L1 -3122 3024 2620 892 251 132 13 chr12 129611993 129612314 -14174141 - L1MEc LINE L1 -3913 2483 2093 1485 127 18 5 chr12 129612314 129612535 -14173920 - AluSg/x SINE Alu -7 305 82 892 251 132 13 chr12 129612535 129612660 -14173795 - L1MEc LINE L1 -4303 2093 1984 35 24 0 0 chr12 129612661 129612703 -14173752 + AT_rich Low_complexity Low_complexity 1 42 0 1084 266 172 23 chr12 129612704 129613166 -14173289 - MLT1G3 LTR MaLR 0 595 35 186 71 0 0 chr12 129613178 129613206 -14173249 + (CA)n Simple_repeat Simple_repeat 1 28 0 289 266 76 0 chr12 129613292 129613371 -14173084 - MLT1G3 LTR MaLR -510 85 1 2996 271 141 30 chr12 129613376 129613483 -14172972 - L1MEc LINE L1 -4450 1946 1852 2278 116 0 0 chr12 129613483 129613793 -14172662 - AluSx SINE Alu -2 310 1 2996 271 141 30 chr12 129613793 129614066 -14172389 - L1MEc LINE L1 -4544 1852 1611 198 0 0 0 chr12 129614066 129614088 -14172367 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2201 101 3 0 chr12 129614088 129614370 -14172085 - AluSg SINE Alu -25 285 3 2996 271 141 30 chr12 129614370 129615672 -14170783 - L1MEc LINE L1 -4784 1612 81 1529 173 72 42 chr12 129615740 129615872 -14170583 - MER2 DNA MER2_type 0 345 218 1268 125 88 9 chr12 129615872 129616088 -14170367 + MER46A DNA MER2_type 1 233 -3 1529 173 72 42 chr12 129616088 129616192 -14170263 - MER2 DNA MER2_type -127 218 119 2188 136 0 0 chr12 129616192 129616494 -14169961 - AluSq SINE Alu -11 302 1 1529 173 72 42 chr12 129616494 129616591 -14169864 - MER2 DNA MER2_type -226 119 1 2502 165 41 23 chr12 129616685 129616809 -14169646 - L1MB3 LINE L1 -7 6176 6056 1864 124 4 11 chr12 129616809 129617084 -14169371 - AluSx SINE Alu -4 308 36 2502 165 41 23 chr12 129617084 129617473 -14168982 - L1MB3 LINE L1 -127 6056 5654 2231 98 24 0 chr12 129617505 129617801 -14168654 - AluSp SINE Alu -10 303 1 1767 266 125 2 chr12 129618352 129618950 -14167505 + MER20B DNA MER1_type 1 672 -111 2141 105 18 0 chr12 129619185 129619462 -14166993 + AluSc SINE Alu 1 282 -27 879 168 0 26 chr12 129619694 129619849 -14166606 - AluJb SINE Alu -13 299 149 2075 153 0 0 chr12 129620055 129620355 -14166100 - AluJb SINE Alu -12 300 1 832 164 0 0 chr12 129620361 129620489 -14165966 - FLAM_C SINE Alu -3 130 3 1476 138 7 93 chr12 129620518 129620808 -14165647 + AluJo SINE Alu 46 310 -2 2364 104 3 0 chr12 129620812 129621119 -14165336 + AluSx SINE Alu 1 308 -4 405 294 73 23 chr12 129621360 129621578 -14164877 - L1MC4a LINE L1 -1958 5850 5622 2146 112 3 22 chr12 129621683 129621995 -14164460 - AluSx SINE Alu -6 306 1 2114 116 9 31 chr12 129622041 129622361 -14164094 - AluSq SINE Alu 0 313 1 496 307 41 83 chr12 129622375 129622665 -14163790 + L2 LINE L2 2992 3269 -3 768 161 40 13 chr12 129622884 129623033 -14163422 - L1MC2 LINE L1 -24 6320 6168 2917 148 25 0 chr12 129623034 129623522 -14162933 - L1MC2 LINE L1 -209 6135 5636 1852 241 90 5 chr12 129623524 129624127 -14162328 - L1M4 LINE L1 -3254 2892 2239 2158 83 10 20 chr12 129624130 129624430 -14162025 + AluY SINE Alu 1 297 -14 2088 107 10 10 chr12 129624452 129624751 -14161704 + AluSx SINE Alu 1 299 -13 2127 114 13 0 chr12 129624776 129625074 -14161381 + AluSx SINE Alu 1 302 -10 2230 89 10 7 chr12 129625338 129625640 -14160815 - AluSc SINE Alu -6 303 1 2593 65 7 0 chr12 129626309 129626618 -14159837 - AluY SINE Alu 0 311 1 860 250 39 25 chr12 129626825 129627109 -14159346 + L2 LINE L2 2931 3218 -95 25 0 0 0 chr12 129627745 129627770 -14158685 + GC_rich Low_complexity Low_complexity 1 25 0 428 216 87 0 chr12 129628426 129628548 -14157907 - MIR SINE MIR -65 143 59 2170 122 0 3 chr12 129628665 129628961 -14157494 - AluSx SINE Alu -17 295 1 22 0 0 0 chr12 129628993 129629015 -14157440 + AT_rich Low_complexity Low_complexity 1 22 0 995 182 0 0 chr12 129629018 129629177 -14157278 - AluJb SINE Alu -15 297 139 576 230 44 7 chr12 129629211 129629346 -14157109 - Charlie8 DNA MER1_type -2178 239 100 300 271 76 62 chr12 129629619 129629829 -14156626 - LTR67 LTR ERVL -8 549 337 935 175 6 29 chr12 129629887 129630058 -14156397 - FRAM SINE Alu -1 175 9 485 274 114 5 chr12 129630195 129630396 -14156059 + HsTC2 DNA Tc2 670 892 -1006 254 288 90 9 chr12 129630736 129630847 -14155608 - MER5A DNA MER1_type -7 182 63 1049 208 48 39 chr12 129630871 129631203 -14155252 - MER1A DNA MER1_type -4 525 191 327 262 7 36 chr12 129631203 129631373 -14155082 + T-rich Low_complexity Low_complexity 1 165 0 1257 133 107 9 chr12 129631473 129631730 -14154725 + AluSc SINE Alu 33 311 0 777 212 6 81 chr12 129631730 129631843 -14154612 + L1MEc LINE L1 2007 2127 -4269 1974 138 3 3 chr12 129631843 129632139 -14154316 + AluSq SINE Alu 1 296 -17 777 212 6 81 chr12 129632139 129632346 -14154109 + L1MEc LINE L1 2127 2303 -4093 370 105 0 158 chr12 129632352 129632428 -14154027 + AluS SINE Alu 2 65 -238 371 208 0 69 chr12 129632451 129632595 -14153860 + G-rich Low_complexity Low_complexity 5 138 0 27 49 0 0 chr12 129632801 129632842 -14153613 + GC_rich Low_complexity Low_complexity 1 41 0 1129 160 0 0 chr12 129632987 129633168 -14153287 + AluY SINE Alu 130 310 -1 2127 114 13 0 chr12 129633245 129633543 -14152912 - AluSx SINE Alu -10 302 1 2074 110 10 10 chr12 129633568 129633867 -14152588 - AluSx SINE Alu -13 299 1 2132 84 10 20 chr12 129633892 129634189 -14152266 - AluY SINE Alu -17 294 1 1843 242 90 5 chr12 129634192 129634795 -14151660 + L1MEc LINE L1 2308 2961 -3254 2938 149 22 0 chr12 129634797 129635286 -14151169 + L1MC2 LINE L1 5636 6135 -209 768 161 40 13 chr12 129635287 129635436 -14151019 + L1MC2 LINE L1 6168 6320 -24 496 307 41 83 chr12 129635655 129635945 -14150510 - L2 LINE L2 -3 3269 2992 1992 130 3 23 chr12 129635959 129636267 -14150188 + AluSx SINE Alu 1 302 -10 2412 70 0 29 chr12 129636644 129636957 -14149498 - AluSp SINE Alu -9 304 1 2069 124 3 0 chr12 129637176 129637466 -14148989 + AluSx SINE Alu 1 291 -21 1589 142 4 47 chr12 129638404 129638577 -14147878 - AluJb SINE Alu -15 297 139 2468 87 0 0 chr12 129638577 129638877 -14147578 - AluSc SINE Alu -9 300 1 1589 142 4 47 chr12 129638877 129638977 -14147478 - AluJb SINE Alu -173 139 36 1903 170 44 23 chr12 129638977 129639366 -14147089 - L1MB3 LINE L1 -133 6050 5654 966 154 37 6 chr12 129639402 129639564 -14146891 - AluSp SINE Alu -13 300 134 2628 50 0 0 chr12 129639564 129639863 -14146592 - AluY SINE Alu -8 303 5 328 272 8 64 chr12 129639909 129640034 -14146421 - MIR3 SINE MIR -54 154 37 1882 136 7 26 chr12 129640225 129640357 -14146098 + AluSx SINE Alu 6 139 -173 2438 79 0 3 chr12 129640357 129640661 -14145794 + AluSp SINE Alu 1 303 -10 1882 136 7 26 chr12 129640661 129640830 -14145625 + AluSx SINE Alu 139 301 -11 213 39 0 0 chr12 129641386 129641412 -14145043 + (TC)n Simple_repeat Simple_repeat 1 26 0 1851 133 3 44 chr12 129641422 129641716 -14144739 - AluJo SINE Alu -30 282 1 1594 184 0 24 chr12 129641726 129642019 -14144436 - AluJo SINE Alu -26 286 1 905 128 8 0 chr12 129642029 129642154 -14144301 - FLAM_C SINE Alu -17 126 1 281 254 0 0 chr12 129642233 129642296 -14144159 - MLT1K LTR MaLR -9 579 517 2083 128 7 0 chr12 129642572 129642868 -14143587 - AluSx SINE Alu -14 298 1 624 200 55 111 chr12 129643495 129643561 -14142894 + MIR SINE MIR 41 109 -153 1918 162 13 0 chr12 129643561 129643869 -14142586 - AluJo SINE Alu 0 312 1 866 116 0 8 chr12 129643874 129644003 -14142452 - FLAM_C SINE Alu -5 128 1 624 200 55 111 chr12 129644003 129644165 -14142290 + MIR SINE MIR 113 262 0 389 254 102 11 chr12 129644176 129644353 -14142102 - MIR SINE MIR -6 256 64 2182 124 0 19 chr12 129645240 129645411 -14141044 - AluSx SINE Alu -11 301 137 2280 107 0 3 chr12 129645411 129645710 -14140745 - AluSc SINE Alu -11 298 1 2182 124 0 19 chr12 129645710 129645845 -14140610 - AluSx SINE Alu -175 137 1 630 168 28 0 chr12 129645958 129646065 -14140390 + AluJb SINE Alu 28 137 -175 209 242 0 30 chr12 129646091 129646157 -14140298 + MER5A DNA MER1_type 103 166 -23 197 308 90 15 chr12 129646282 129646415 -14140040 - L2 LINE L2 -304 2968 2826 763 233 138 78 chr12 129646490 129646755 -14139700 - MER113 DNA MER1_type? -32 489 241 2036 127 3 23 chr12 129646755 129647062 -14139393 - AluSx SINE Alu -11 301 1 763 233 138 78 chr12 129647062 129647107 -14139348 - MER113 DNA MER1_type? -280 241 200 2550 68 6 0 chr12 129647107 129647418 -14139037 - AluSp SINE Alu 0 313 1 763 233 138 78 chr12 129647418 129647540 -14138915 - MER113 DNA MER1_type? -321 200 30 361 219 142 77 chr12 129647633 129647788 -14138667 + MER63B DNA MER1_type 1 165 -271 2261 120 0 0 chr12 129648108 129648409 -14138046 - AluSx SINE Alu -11 301 1 723 207 25 6 chr12 129648427 129648595 -14137860 - MIR SINE MIR -36 172 4 194 330 22 22 chr12 129648595 129648630 -14137825 + MIR SINE MIR 107 141 -121 382 269 193 12 chr12 129648700 129648871 -14137584 + MIR SINE MIR 1 202 -60 1471 240 44 23 chr12 129649169 129649602 -14136853 + MER119 DNA MER1_type 56 497 -86 2281 109 0 13 chr12 129649605 129649916 -14136539 - AluSx SINE Alu -5 307 1 2395 109 0 0 chr12 129649921 129650233 -14136222 - AluSx SINE Alu 0 312 1 242 174 22 0 chr12 129650249 129650295 -14136160 - tRNA-Ser-TCC tRNA tRNA -38 47 1 2278 111 0 3 chr12 129650789 129651086 -14135369 + AluSx SINE Alu 1 296 -16 720 160 179 21 chr12 129651326 129651554 -14134901 + MLT1A1 LTR MaLR 3 334 -31 2067 122 54 0 chr12 129651554 129651848 -14134607 - AluSx SINE Alu -2 310 1 720 160 179 21 chr12 129651848 129651887 -14134568 + MLT1A1 LTR MaLR 334 365 0 330 321 139 63 chr12 129651895 129652132 -14134323 + L2 LINE L2 3014 3268 -4 857 237 137 59 chr12 129652262 129652634 -14133821 - MLT1J LTR MaLR -97 414 14 285 182 0 36 chr12 129652655 129652710 -14133745 - MIR SINE MIR -12 250 198 200 167 0 0 chr12 129652774 129652804 -14133651 + (CACG)n Simple_repeat Simple_repeat 2 31 0 2278 106 7 0 chr12 129653257 129653558 -14132897 - AluSx SINE Alu -9 303 1 401 212 142 9 chr12 129653773 129653886 -14132569 + MLT1J LTR MaLR 384 511 0 311 260 240 0 chr12 129654006 129654110 -14132345 - L2 LINE L2 -4 3309 3181 2735 33 0 0 chr12 129654337 129654639 -14131816 - AluY SINE Alu -7 304 3 1287 236 59 100 chr12 129654704 129655097 -14131358 - MER77 LTR ERV1 0 605 341 2056 106 13 23 chr12 129655097 129655399 -14131056 - AluSx SINE Alu -5 307 9 1287 236 59 100 chr12 129655399 129655653 -14130802 - MER77 LTR ERV1 -264 341 78 923 118 110 0 chr12 129655684 129655820 -14130635 - AluJb SINE Alu -5 307 157 2150 142 0 3 chr12 129656874 129657177 -14129278 + AluSq SINE Alu 1 302 -11 967 182 102 17 chr12 129657178 129657281 -14129174 + MER2 DNA MER2_type 90 183 -162 1260 125 88 9 chr12 129657281 129657497 -14128958 - MER46A DNA MER2_type -3 233 1 967 182 102 17 chr12 129657497 129657629 -14128826 + MER2 DNA MER2_type 183 345 0 1879 293 129 29 chr12 129657697 129658994 -14127461 + L1MEc LINE L1 81 1508 -4888 2292 78 0 56 chr12 129658998 129659319 -14127136 + AluSg SINE Alu 3 305 -5 2117 132 0 26 chr12 129660561 129660872 -14125583 - AluSp SINE Alu -10 303 1 1890 169 0 25 chr12 129660875 129661195 -14125260 - AluJo SINE Alu 0 312 1 732 123 9 0 chr12 129661205 129661319 -14125136 - FRAM SINE Alu -3 173 59 224 241 0 0 chr12 129661337 129661391 -14125064 + MER5B DNA MER1_type 125 178 0 958 264 25 4 chr12 129661490 129661729 -14124726 + MIR SINE MIR 16 259 -3 2123 112 41 3 chr12 129661813 129662107 -14124348 - AluSx SINE Alu -7 305 1 2515 77 0 0 chr12 129662823 129663123 -14123332 + AluY SINE Alu 1 300 -11 50 75 0 0 chr12 129663173 129663279 -14123176 + AT_rich Low_complexity Low_complexity 1 106 0 1581 157 36 49 chr12 129663293 129663462 -14122993 - AluJo SINE Alu -11 301 136 1707 192 0 7 chr12 129663462 129663769 -14122686 - AluJb SINE Alu -7 305 1 1581 157 36 49 chr12 129663769 129663904 -14122551 - AluJo SINE Alu -176 136 1 2126 198 65 29 chr12 129663905 129664252 -14122203 + MER97a DNA MER1_type? 277 655 -239 2469 91 3 0 chr12 129664252 129664559 -14121896 - AluSp SINE Alu -5 308 1 2126 198 65 29 chr12 129664559 129664792 -14121663 + MER97a DNA MER1_type? 655 878 -16 2421 43 0 11 chr12 129664824 129665124 -14121331 + AluY SINE Alu 6 302 0 224 331 57 40 chr12 129665125 129665249 -14121206 - L3 LINE CR1 -323 1254 1129 442 275 119 19 chr12 129665274 129665434 -14121021 + MIR SINE MIR 22 197 -65 619 178 0 0 chr12 129665690 129665797 -14120658 + L1ME1 LINE L1 5448 5554 -612 232 91 0 0 chr12 129665799 129665832 -14120623 + AluJb SINE Alu 1 33 -270 4430 135 90 47 chr12 129665833 129666838 -14119617 + pTR5 LTR ERV1 743 1999 -439 290 235 30 76 chr12 129666838 129666970 -14119485 + LTR30 LTR ERV1 517 642 -80 2322 98 0 0 chr12 129666970 129667297 -14119158 + pTR5 LTR ERV1 66 392 -2046 1523 149 59 8 chr12 129667297 129667552 -14118903 + AluJb SINE Alu 31 298 -14 1909 117 79 14 chr12 129667564 129667855 -14118600 + AluSx SINE Alu 2 311 -1 1586 214 40 11 chr12 129667855 129668225 -14118230 + L1ME1 LINE L1 5589 5969 -197 1100 147 31 16 chr12 129668225 129668416 -14118039 + AluSq SINE Alu 3 196 -117 2206 113 3 0 chr12 129668419 129668721 -14117734 - AluSx SINE Alu -9 303 1 397 208 0 0 chr12 129669178 129669255 -14117200 - MIR SINE MIR -3 259 183 1851 166 0 3 chr12 129669328 129669617 -14116838 - AluSx SINE Alu -24 288 1 773 183 0 36 chr12 129669619 129669756 -14116699 - FLAM_C SINE Alu -9 134 3 1833 139 42 21 chr12 129670188 129670476 -14115979 + AluSx SINE Alu 3 296 -16 2257 117 0 0 chr12 129670480 129670778 -14115677 + AluSx SINE Alu 1 298 -14 327 318 84 0 chr12 129670780 129670887 -14115568 - MER5A DNA MER1_type -57 132 17 554 244 46 46 chr12 129670993 129671190 -14115265 + MIR SINE MIR 11 207 -55 2187 129 3 10 chr12 129671260 129671571 -14114884 + AluSx SINE Alu 1 309 -3 1915 166 0 25 chr12 129671581 129671901 -14114554 + AluJo SINE Alu 1 312 0 2232 130 0 9 chr12 129671905 129672221 -14114234 + AluSq SINE Alu 1 313 0 1054 273 71 62 chr12 129672241 129672920 -14113535 + L1ME LINE L1 76 760 -5310 2250 128 0 0 chr12 129672920 129673217 -14113238 - AluSx SINE Alu -15 297 1 213 200 0 0 chr12 129673218 129673253 -14113202 + polypyrimidine Low_complexity Low_complexity 3 37 0 2368 173 32 38 chr12 129673253 129673610 -14112845 - L1MB7 LINE L1 -16 6168 5813 2380 114 0 0 chr12 129673610 129673917 -14112538 - AluSx SINE Alu -5 307 1 2368 173 32 38 chr12 129673917 129674062 -14112393 - L1MB7 LINE L1 -371 5813 5669 548 282 190 13 chr12 129674070 129674427 -14112028 + L2 LINE L2 2602 3016 -256 204 40 0 0 chr12 129674455 129674480 -14111975 + (TC)n Simple_repeat Simple_repeat 2 26 0 1106 129 94 30 chr12 129674480 129674625 -14111830 - AluJb SINE Alu -15 297 134 2338 97 3 0 chr12 129674625 129674924 -14111531 - AluSp SINE Alu -13 300 1 1106 129 94 30 chr12 129674924 129674979 -14111476 - AluJb SINE Alu -178 134 84 797 219 163 73 chr12 129675082 129675292 -14111163 + LTR16A1 LTR ERVL 1 191 -266 2277 105 3 0 chr12 129675292 129675586 -14110869 + AluSx SINE Alu 1 295 -17 797 219 163 73 chr12 129675586 129675785 -14110670 + LTR16A1 LTR ERVL 191 447 -10 1530 158 16 85 chr12 129676006 129676192 -14110263 - AluJb SINE Alu -18 294 137 180 0 0 0 chr12 129676192 129676212 -14110243 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1530 158 16 85 chr12 129676212 129676341 -14110114 - AluJb SINE Alu -175 137 1 270 326 0 22 chr12 129676345 129676437 -14110018 + L2 LINE L2 3173 3262 -51 434 226 14 17 chr12 129676442 129676599 -14109856 + L1MC4a LINE L1 5668 5822 -299 1198 141 11 16 chr12 129676605 129676796 -14109659 + AluJo SINE Alu 6 195 -117 372 239 0 67 chr12 129676801 129676935 -14109520 + L1MC4a LINE L1 5811 5935 -1873 252 173 120 0 chr12 129676949 129677024 -14109431 + L1MEc LINE L1 731 814 -5582 1351 130 45 22 chr12 129677275 129677498 -14108957 + AluJo SINE Alu 85 312 0 532 254 32 55 chr12 129677704 129677924 -14108531 + L1ME LINE L1 5575 5789 -332 1054 191 0 0 chr12 129677964 129678126 -14108329 - FAM SINE Alu -9 166 5 2488 77 0 6 chr12 129678147 129678460 -14107995 - AluY SINE Alu 0 311 1 1917 46 0 0 chr12 129678501 129678720 -14107735 + AluY SINE Alu 86 304 -7 1178 139 10 40 chr12 129678761 129678963 -14107492 + AluSg/x SINE Alu 109 304 -6 763 245 0 7 chr12 129678974 129679121 -14107334 + FRAM SINE Alu 1 146 -30 1828 128 49 0 chr12 129679121 129679387 -14107068 - AluSx SINE Alu -13 299 21 186 43 0 0 chr12 129679408 129679431 -14107024 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 270 257 139 20 chr12 129679451 129679552 -14106903 + MIR SINE MIR 32 144 -118 268 205 77 26 chr12 129679566 129679644 -14106811 - MLT1J2 LTR MaLR 0 450 369 430 254 98 0 chr12 129679844 129680017 -14106438 - MLT1J2 LTR MaLR -239 211 22 252 0 0 0 chr12 129680039 129680067 -14106388 + (TCC)n Simple_repeat Simple_repeat 1 28 0 351 0 0 0 chr12 129680067 129680106 -14106349 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 739 201 0 8 chr12 129680285 129680419 -14106036 + FLAM_C SINE Alu 1 133 0 228 128 64 0 chr12 129680531 129680578 -14105877 - MSTB1 LTR MaLR -2 430 381 1152 186 49 0 chr12 129680578 129680782 -14105673 + AluSg/x SINE Alu 99 312 0 2240 121 3 3 chr12 129680789 129681102 -14105353 + AluSq SINE Alu 1 313 0 729 184 63 32 chr12 129681122 129681263 -14105192 + MLT1B LTR MaLR 195 345 -45 2197 138 0 10 chr12 129681263 129681574 -14104881 + AluSx SINE Alu 1 308 -4 729 184 63 32 chr12 129681574 129681622 -14104833 + MLT1B LTR MaLR 345 390 0 2227 127 0 6 chr12 129681735 129682049 -14104406 - AluSx SINE Alu 0 312 1 2441 106 0 3 chr12 129682206 129682518 -14103937 - AluSx SINE Alu -1 311 1 353 271 19 28 chr12 129682836 129682943 -14103512 + MIR SINE MIR 86 191 -71 1318 123 0 0 chr12 129682963 129683142 -14103313 - AluSg/x SINE Alu 0 312 134 2387 83 10 0 chr12 129683142 129683443 -14103012 - AluSp SINE Alu -9 304 1 2187 129 53 31 chr12 129683480 129683836 -14102619 + THE1B LTR MaLR 1 364 0 557 198 0 24 chr12 129684315 129684441 -14102014 - L1MA10 LINE L1 -2 6332 6210 2366 88 3 7 chr12 129684442 129684748 -14101707 + AluSg SINE Alu 1 305 -5 292 75 113 19 chr12 129684748 129684801 -14101654 - AluY SINE Alu -107 194 137 2033 120 10 3 chr12 129685132 129685424 -14101031 + AluSx SINE Alu 10 303 -9 2324 98 0 0 chr12 129685432 129685728 -14100727 + AluSx SINE Alu 1 296 -16 29 60 0 0 chr12 129685730 129685780 -14100675 + AT_rich Low_complexity Low_complexity 1 50 0 717 219 112 39 chr12 129685798 129685938 -14100517 - MER97a DNA MER1_type? -644 250 85 1642 168 22 50 chr12 129685938 129686259 -14100196 - AluJo SINE Alu 0 312 1 717 219 112 39 chr12 129686259 129686351 -14100104 - MER97a DNA MER1_type? -809 85 1 2413 82 13 0 chr12 129686440 129686744 -14099711 - AluSx SINE Alu -4 308 1 280 293 0 95 chr12 129686744 129686788 -14099667 + MIR SINE MIR 103 150 -112 2148 101 7 23 chr12 129686788 129687094 -14099361 - AluSx SINE Alu -11 301 1 280 293 0 95 chr12 129687094 129687165 -14099290 + MIR SINE MIR 150 207 -55 927 221 11 16 chr12 129687437 129687627 -14098828 - MER5A DNA MER1_type 0 189 1 323 320 34 14 chr12 129687938 129688076 -14098379 - L2 LINE L2 -803 2511 2368 1955 174 10 0 chr12 129688076 129688370 -14098085 - AluJb SINE Alu -15 297 1 2175 105 18 0 chr12 129688463 129688749 -14097706 - AluSx SINE Alu -21 291 1 331 209 105 0 chr12 129688749 129688835 -14097620 - Tigger8 DNA MER2_type -340 326 232 2227 107 0 19 chr12 129689683 129690000 -14096455 + AluJo SINE Alu 1 311 -1 2149 92 3 14 chr12 129690131 129690435 -14096020 - AluSx SINE Alu 0 301 1 2203 88 39 0 chr12 129690436 129690721 -14095734 - AluSx SINE Alu -16 296 1 430 303 35 30 chr12 129690731 129690929 -14095526 - MLT1C LTR MaLR -76 391 193 1894 133 16 13 chr12 129690955 129691264 -14095191 - AluSp SINE Alu 0 313 4 375 248 51 0 chr12 129691761 129691878 -14094577 + MER3 DNA MER1_type 21 143 -66 218 271 17 17 chr12 129692078 129692137 -14094318 - L2 LINE L2 -20 3293 3235 1170 268 82 9 chr12 129694406 129694847 -14091608 + L1MC2 LINE L1 5859 6331 -13 4048 130 124 29 chr12 129696035 129697307 -14089148 - pTR5 LTR ERV1 0 2438 743 2641 166 155 42 chr12 129697410 129698008 -14088447 + L1MA7 LINE L1 4982 5511 -801 2023 118 25 0 chr12 129698008 129698288 -14088167 + AluSx SINE Alu 1 316 0 262 0 0 0 chr12 129698288 129698317 -14088138 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 2641 166 155 42 chr12 129698317 129698707 -14087748 + L1MA7 LINE L1 5511 6307 -5 2217 119 0 10 chr12 129699993 129700295 -14086160 - AluSx SINE Alu -13 299 1 2003 103 7 34 chr12 129700387 129700726 -14085729 - AluSp SINE Alu 0 331 1 1738 125 61 11 chr12 129701487 129701766 -14084689 + AluSx SINE Alu 1 293 -19 3856 160 20 15 chr12 129702069 129702334 -14084121 + L1 LINE L1 3533 3795 -2351 4065 104 25 15 chr12 129702334 129702454 -14084001 - LTR43 LTR ERV1 0 602 485 2094 88 77 0 chr12 129702454 129702728 -14083727 + AluSp SINE Alu 1 295 -18 4065 104 25 15 chr12 129702728 129703203 -14083252 - LTR43 LTR ERV1 -117 485 1 3856 160 20 15 chr12 129703203 129703731 -14082724 + L1 LINE L1 3795 4330 -1816 383 276 48 0 chr12 129704201 129704306 -14082149 + L2 LINE L2 3162 3271 -1 200 170 0 43 chr12 129704433 129704480 -14081975 - MIR SINE MIR -33 229 185 357 232 34 17 chr12 129704501 129704678 -14081777 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 101 0 0 chr12 129704682 129704761 -14081694 + AT_rich Low_complexity Low_complexity 1 79 0 710 247 63 0 chr12 129704761 129704951 -14081504 - MIR SINE MIR -59 203 2 1200 258 104 22 chr12 129705093 129705762 -14080693 - L2 LINE L2 -2 3311 2591 2498 71 3 7 chr12 129705797 129706107 -14080348 + AluSc SINE Alu 1 309 0 233 197 42 0 chr12 129706159 129706230 -14080225 - L1 LINE L1 -3274 2872 2799 2233 113 0 10 chr12 129706650 129706952 -14079503 + AluSx SINE Alu 1 299 -13 307 312 98 33 chr12 129706962 129707299 -14079156 + HAL1b LINE L1 280 638 -710 2243 126 7 0 chr12 129707615 129707925 -14078530 + AluSx SINE Alu 1 312 0 2992 196 15 32 chr12 129708190 129708228 -14078227 + L1M1 LINE L1 19 56 -7509 2471 71 7 0 chr12 129708228 129708525 -14077930 + AluY SINE Alu 1 299 -12 2992 196 15 32 chr12 129708525 129709138 -14077317 + L1M1 LINE L1 56 659 -6906 645 166 86 7 chr12 129709112 129709251 -14077204 + L1M1 LINE L1 220 369 -7196 * 437 195 23 0 chr12 129709234 129709321 -14077134 + L1M1 LINE L1 882 970 -6595 * 7588 148 58 23 chr12 129709876 129711249 -14075206 + L1M1 LINE L1 963 2384 -5181 996 128 0 0 chr12 129711249 129711382 -14075073 + AluSq/x SINE Alu 1 133 -180 2154 124 3 3 chr12 129711386 129711693 -14074762 + AluSx SINE Alu 1 307 -5 681 134 7 99 chr12 129711891 129712033 -14074422 + FLAM_A SINE Alu 10 138 -4 1393 136 25 25 chr12 129712040 129712276 -14074179 - AluYb8 SINE Alu 0 318 83 2160 75 68 7 chr12 129712408 129712703 -14073752 - AluSq SINE Alu 0 313 1 268 43 43 0 chr12 129713243 129713289 -14073166 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2144 81 44 34 chr12 129713439 129713736 -14072719 + AluSx SINE Alu 10 309 -3 306 228 62 117 chr12 129714072 129714217 -14072238 + MIR3 SINE MIR 5 141 -67 351 0 0 0 chr12 129714292 129714331 -14072124 + (ATG)n Simple_repeat Simple_repeat 2 40 0 822 138 0 0 chr12 129714407 129714523 -14071932 + FLAM_C SINE Alu 1 116 -17 59 27 0 0 chr12 129714523 129714596 -14071859 + AT_rich Low_complexity Low_complexity 1 73 0 2385 77 16 19 chr12 129714682 129714994 -14071461 + AluY SINE Alu 1 311 0 1743 169 35 7 chr12 129715326 129715610 -14070845 + AluJo SINE Alu 1 292 -20 2009 125 6 58 chr12 129716333 129716662 -14069793 - AluSx SINE Alu 0 312 1 2304 119 0 3 chr12 129716668 129716980 -14069475 - AluSx SINE Alu -1 311 1 546 206 22 193 chr12 129717016 129717332 -14069123 - L2 LINE L2 -488 2826 2565 474 217 92 13 chr12 129717364 129717516 -14068939 - L1MC5 LINE L1 -53 7908 7745 1992 237 56 11 chr12 129717519 129718055 -14068400 - L2 LINE L2 -772 2542 1983 2137 130 3 7 chr12 129718059 129718360 -14068095 + AluJb SINE Alu 5 304 -8 610 301 104 39 chr12 129718435 129718821 -14067634 - L2 LINE L2 -560 2754 2344 819 204 14 0 chr12 129718953 129719100 -14067355 - FRAM SINE Alu -30 146 1 249 370 151 0 chr12 129719185 129719377 -14067078 - L2 LINE L2 -1321 1993 1773 310 207 24 0 chr12 129719837 129719919 -14066536 - L1MA7 LINE L1 -69 6222 6139 * 1276 232 19 67 chr12 129719915 129720141 -14066314 - L1M4 LINE L1 -1825 4321 4127 2415 91 3 0 chr12 129720141 129720438 -14066017 + AluSp SINE Alu 1 298 -15 1276 232 19 67 chr12 129720438 129720672 -14065783 - L1M4 LINE L1 -2019 4127 3883 2979 221 55 77 chr12 129721348 129721488 -14064967 - L1M4 LINE L1 -2244 3902 3761 2037 137 6 16 chr12 129721488 129721801 -14064654 - AluJb SINE Alu -2 310 1 2979 221 55 77 chr12 129721801 129722190 -14064265 - L1M4 LINE L1 -2385 3761 3365 2626 62 0 0 chr12 129722190 129722495 -14063960 - AluY SINE Alu -6 305 1 2979 221 55 77 chr12 129722495 129723370 -14063085 - L1M4 LINE L1 -2781 3365 2527 6683 74 22 56 chr12 129723390 129725566 -14060889 - SVA Other Other -518 1386 5 535 163 13 146 chr12 129725587 129725826 -14060629 - L1M4 LINE L1 -3604 2542 2336 2235 135 0 0 chr12 129726002 129726306 -14060149 - AluSx SINE Alu -8 304 1 242 174 22 0 chr12 129726800 129726846 -14059609 + tRNA-Ser-TCC tRNA tRNA 1 47 -38 2395 109 0 0 chr12 129726862 129727174 -14059281 + AluSx SINE Alu 1 312 0 2281 109 0 13 chr12 129727179 129727490 -14058965 + AluSx SINE Alu 1 307 -5 1471 240 44 23 chr12 129727493 129727926 -14058529 - MER119 DNA MER1_type -86 497 56 394 263 193 12 chr12 129728224 129728395 -14058060 - MIR SINE MIR -60 202 1 194 330 22 22 chr12 129728465 129728500 -14057955 - MIR SINE MIR -121 141 107 723 207 25 6 chr12 129728500 129728668 -14057787 + MIR SINE MIR 4 172 -36 2228 130 0 0 chr12 129728686 129728994 -14057461 + AluSx SINE Alu 1 308 -4 392 302 35 12 chr12 129729282 129729454 -14057001 - L1MC/D LINE L1 -2011 5797 5622 187 273 45 15 chr12 129729454 129729520 -14056935 + MIR3 SINE MIR 5 72 -136 1618 156 14 38 chr12 129729562 129729874 -14056581 - AluSx SINE Alu 0 305 1 227 268 0 0 chr12 129729905 129729961 -14056494 + GA-rich Low_complexity Low_complexity 1 56 0 1207 93 0 0 chr12 129730499 129730649 -14055806 + AluSq/x SINE Alu 1 150 -162 180 350 19 50 chr12 129730830 129730990 -14055465 - MIR SINE MIR -46 216 62 591 228 27 33 chr12 129731140 129731324 -14055131 + MIR3 SINE MIR 24 206 -2 359 152 121 0 chr12 129731412 129731478 -14054977 + MIR SINE MIR 53 126 -82 2279 90 17 3 chr12 129731492 129731791 -14054664 + AluSc SINE Alu 1 303 -6 306 337 65 0 chr12 129731791 129731883 -14054572 - L2 LINE L2 -788 2526 2429 453 211 89 32 chr12 129732235 129732393 -14054062 + MIR SINE MIR 15 179 -63 207 316 71 20 chr12 129732397 129732495 -14053960 + L2 LINE L2 3126 3228 -44 725 292 60 16 chr12 129732687 129732937 -14053518 + MIR SINE MIR 2 262 0 2243 107 0 13 chr12 129732961 129733260 -14053195 + AluSx SINE Alu 1 295 -17 2428 86 0 3 chr12 129733262 129733565 -14052890 + AluSx SINE Alu 1 302 -10 1182 152 0 0 chr12 129733565 129733736 -14052719 + AluSg/x SINE Alu 132 302 -8 203 293 43 35 chr12 129733963 129734079 -14052376 + L2 LINE L2 3173 3289 -24 197 258 81 0 chr12 129734263 129734325 -14052130 - MER5A DNA MER1_type -27 162 96 390 257 28 0 chr12 129734624 129734733 -14051722 + MIR SINE MIR 64 175 -87 2337 225 52 23 chr12 129735155 129735377 -14051078 + L1MB7 LINE L1 5438 5652 -532 2457 68 14 0 chr12 129735377 129735669 -14050786 + AluSp SINE Alu 3 298 -15 2337 225 52 23 chr12 129735669 129736154 -14050301 + L1MB7 LINE L1 5652 6166 -18 302 350 124 18 chr12 129736562 129736779 -14049676 + MIR SINE MIR 2 241 -21 181 430 47 9 chr12 129736961 129737068 -14049387 - MIR SINE MIR -64 144 34 726 234 76 101 chr12 129737143 129737555 -14048900 + MER66A LTR ERV1 99 468 -10 290 284 19 68 chr12 129738934 129739094 -14047361 - MIR SINE MIR -62 146 40 415 229 132 21 chr12 129740182 129740326 -14046129 + MIR SINE MIR 103 262 0 2349 109 0 3 chr12 129740411 129740715 -14045740 + AluSx SINE Alu 1 303 -9 259 137 27 0 chr12 129740767 129740840 -14045615 + (TA)n Simple_repeat Simple_repeat 2 76 0 1814 172 3 16 chr12 129741009 129741312 -14045143 - AluJb SINE Alu -13 299 1 2123 141 3 6 chr12 129741326 129741639 -14044816 - AluJb SINE Alu 0 312 1 1117 255 92 78 chr12 129742763 129743328 -14043127 - MLT1K LTR MaLR 0 588 16 2385 156 13 54 chr12 129743753 129744116 -14042339 - L1MB7 LINE L1 -30 6154 5817 2371 110 0 3 chr12 129744116 129744426 -14042029 + AluSx SINE Alu 1 309 -3 2385 156 13 54 chr12 129744426 129744583 -14041872 - L1MB7 LINE L1 -367 5817 5655 530 167 0 10 chr12 129744584 129744686 -14041769 - MER96B DNA MER1_type? -278 139 39 920 141 0 0 chr12 129744688 129744816 -14041639 + FLAM_C SINE Alu 2 129 -14 2210 104 3 10 chr12 129744823 129745132 -14041323 + AluSx SINE Alu 1 307 -5 2508 77 0 0 chr12 129745332 129745632 -14040823 - AluY SINE Alu -11 300 1 2034 155 0 0 chr12 129745632 129745929 -14040526 - AluJo SINE Alu -14 298 2 863 163 0 0 chr12 129745943 129746072 -14040383 + FRAM SINE Alu 28 156 -20 449 17 0 17 chr12 129746085 129746144 -14040311 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 684 134 143 0 chr12 129746963 129747075 -14039380 + FLAM_A SINE Alu 1 128 -5 192 276 0 17 chr12 129747084 129747142 -14039313 + MIR SINE MIR 96 152 -110 356 320 19 0 chr12 129747566 129747669 -14038786 - MIR SINE MIR -79 129 25 834 178 25 19 chr12 129748147 129748304 -14038151 + FRAM SINE Alu 1 157 -19 216 97 0 0 chr12 129748305 129748336 -14038119 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 2072 147 3 6 chr12 129748337 129748650 -14037805 + AluJb SINE Alu 1 312 0 1913 143 3 17 chr12 129748722 129748887 -14037568 - AluJb SINE Alu -15 297 136 2538 88 0 0 chr12 129748887 129749194 -14037261 - AluSc SINE Alu -2 307 1 1147 186 9 0 chr12 129749194 129749329 -14037126 - AluJb SINE Alu -175 137 1 1913 143 3 17 chr12 129749194 129749329 -14037126 - AluJb SINE Alu -176 136 1 461 233 81 45 chr12 129749673 129749891 -14036564 + MIR SINE MIR 60 248 -14 1993 128 3 3 chr12 129750085 129750397 -14036058 - AluSq SINE Alu -1 312 1 375 78 0 0 chr12 129751084 129751135 -14035320 + (CATA)n Simple_repeat Simple_repeat 1 51 0 1867 143 0 0 chr12 129751141 129751421 -14035034 - AluSx SINE Alu -32 280 1 878 193 6 6 chr12 129751425 129751586 -14034869 - FRAM SINE Alu -5 161 1 1262 173 56 0 chr12 129751658 129751889 -14034566 - L1MA4 LINE L1 -289 6011 5768 1136 176 9 5 chr12 129751889 129752099 -14034356 - AluJb SINE Alu -101 211 1 5057 152 28 39 chr12 129752101 129752274 -14034181 - L1MA4 LINE L1 -770 5376 5203 3180 150 15 4 chr12 129752274 129752755 -14033700 + MER66B LTR ERV1 1 486 0 5057 152 28 39 chr12 129752755 129752941 -14033514 - L1MA4 LINE L1 -943 5203 5017 1648 173 3 10 chr12 129752941 129753230 -14033225 + AluJb SINE Alu 2 288 -24 5057 152 28 39 chr12 129753230 129753403 -14033052 - L1MA4 LINE L1 -1129 5017 4844 2200 108 0 10 chr12 129753403 129753708 -14032747 + AluSx SINE Alu 1 302 -10 5057 152 28 39 chr12 129753708 129754235 -14032220 - L1MA4 LINE L1 -1302 4844 4326 983 167 49 34 chr12 129754235 129754439 -14032016 + AluJb SINE Alu 84 290 -22 299 56 0 176 chr12 129754440 129754565 -14031890 - L1 LINE L1 -1811 4335 4233 270 245 21 16 chr12 129754959 129755086 -14031369 + T-rich Low_complexity Low_complexity 1 127 0 1860 151 0 16 chr12 129755292 129755609 -14030846 + AluJo SINE Alu 1 312 0 336 147 0 107 chr12 129755674 129755749 -14030706 + L2 LINE L2 3247 3313 0 503 270 118 24 chr12 129756250 129756461 -14029994 - L2 LINE L2 0 3313 3083 329 136 0 0 chr12 129756466 129756525 -14029930 - L1MB5 LINE L1 -1 6173 6115 787 126 0 0 chr12 129756530 129756641 -14029814 + FLAM_C SINE Alu 7 117 -26 2324 164 45 16 chr12 129756646 129757092 -14029363 - L1MB5 LINE L1 -43 6131 5673 1746 144 3 35 chr12 129757092 129757405 -14029050 + AluSx SINE Alu 1 303 -9 827 283 44 0 chr12 129757507 129757758 -14028697 - MIR SINE MIR 0 262 1 472 207 11 0 chr12 129757779 129757866 -14028589 + L2 LINE L2 3185 3272 0 975 123 65 0 chr12 129758139 129758294 -14028161 + MLT1J LTR MaLR 1 165 -346 610 152 160 8 chr12 129758653 129758778 -14027677 - MLT2B2 LTR ERVL -369 146 3 719 118 0 31 chr12 129758909 129759036 -14027419 + LTR19C LTR ERV1 307 429 -350 1980 140 0 0 chr12 129759149 129759441 -14027014 + AluSx SINE Alu 2 293 -19 721 227 70 25 chr12 129759499 129759741 -14026714 + PABL_B LTR ERV1 411 663 -4 2147 106 0 3 chr12 129759895 129760196 -14026259 + AluSq SINE Alu 1 300 -13 358 214 39 68 chr12 129760196 129760289 -14026166 - L1MC4 LINE L1 -1338 6704 6613 334 220 30 60 chr12 129760226 129760326 -14026129 + L1MC4 LINE L1 1995 2091 -4335 * 21 57 0 0 chr12 129760340 129760375 -14026080 + AT_rich Low_complexity Low_complexity 1 35 0 366 232 12 46 chr12 129760376 129760493 -14025962 + L1MC4 LINE L1 1959 6983 -1339 325 348 0 0 chr12 129760443 129760532 -14025923 - L1MC4 LINE L1 -1340 6702 6614 * 753 221 60 74 chr12 129760537 129760836 -14025619 - MLT1H LTR MaLR -226 323 29 2072 104 7 10 chr12 129760863 129761171 -14025284 - AluSx SINE Alu -5 307 1 702 181 0 0 chr12 129761398 129761514 -14024941 - AluJb SINE Alu -17 295 180 317 191 96 40 chr12 129761514 129761596 -14024859 + AluJo SINE Alu 100 175 -127 1481 148 7 41 chr12 129761597 129762000 -14024455 + AluJb SINE Alu 42 435 0 261 252 165 0 chr12 129762009 129762124 -14024331 + LTR16C LTR ERVL 358 491 0 1326 108 0 0 chr12 129762834 129763020 -14023435 - AluSg/x SINE Alu -1 309 124 1779 180 0 3 chr12 129763496 129763802 -14022653 - AluJb SINE Alu -7 305 1 249 302 108 36 chr12 129764090 129764229 -14022226 + L2 LINE L2 2639 2787 -527 574 146 95 183 chr12 129764253 129764363 -14022092 - LTR16C LTR ERVL -42 449 331 2005 91 0 0 chr12 129764363 129764637 -14021818 + AluSx SINE Alu 1 274 -38 574 146 95 183 chr12 129764637 129764800 -14021655 - LTR16C LTR ERVL -160 331 200 231 36 0 0 chr12 129764831 129764859 -14021596 + (TC)n Simple_repeat Simple_repeat 1 28 0 238 274 105 40 chr12 129765204 129765328 -14021127 - MLT1L LTR MaLR -341 274 143 651 324 156 14 chr12 129765388 129766023 -14020432 - L2 LINE L2 -2280 1034 310 1212 134 34 29 chr12 129766258 129766467 -14019988 + AluJo SINE Alu 5 214 -98 777 138 17 0 chr12 129766469 129766585 -14019870 - AluJo/FLAM SINE Alu -190 122 5 225 147 0 73 chr12 129766776 129766844 -14019611 + LTR65 LTR ERV1 607 669 0 3237 176 42 34 chr12 129768122 129768468 -14017987 - L1MA10 LINE L1 0 6334 5992 912 116 0 16 chr12 129768468 129768597 -14017858 - FLAM_C SINE Alu -5 128 2 3237 176 42 34 chr12 129768597 129768940 -14017515 - L1MA10 LINE L1 -342 5992 5487 33 43 0 0 chr12 129769069 129769116 -14017339 + AT_rich Low_complexity Low_complexity 1 47 0 222 37 0 0 chr12 129769426 129769453 -14017002 + (GA)n Simple_repeat Simple_repeat 2 28 0 1981 154 6 0 chr12 129770278 129770589 -14015866 - AluSq SINE Alu 0 313 1 23 0 0 0 chr12 129770591 129770614 -14015841 + AT_rich Low_complexity Low_complexity 1 23 0 1006 203 23 15 chr12 129770791 129771052 -14015403 + L1MB3 LINE L1 5572 5834 -349 2155 82 9 19 chr12 129771294 129771609 -14014846 + AluSx SINE Alu 1 312 0 393 222 198 0 chr12 129772562 129772688 -14013767 - MIR SINE MIR 0 262 112 258 261 114 78 chr12 129772691 129772936 -14013519 + L1MC4 LINE L1 7641 7894 -148 1238 174 40 18 chr12 129773049 129773325 -14013130 - AluJb SINE Alu -16 296 15 28 29 0 0 chr12 129773342 129773377 -14013078 + AT_rich Low_complexity Low_complexity 1 35 0 273 57 0 0 chr12 129773550 129773585 -14012870 + (TA)n Simple_repeat Simple_repeat 2 36 0 2333 71 3 3 chr12 129773671 129773980 -14012475 - AluY SINE Alu -2 309 1 2597 195 72 5 chr12 129773980 129774607 -14011848 - L1MCa LINE L1 -4942 1484 816 2019 113 0 3 chr12 129774653 129774944 -14011511 + AluSq SINE Alu 1 290 -23 681 133 44 37 chr12 129775234 129775369 -14011086 - AluJo SINE Alu -172 140 5 505 282 0 0 chr12 129775371 129775502 -14010953 + MER3 DNA MER1_type 32 162 -47 806 180 28 22 chr12 129775502 129775680 -14010775 - AluJo SINE Alu -11 301 123 2215 112 0 3 chr12 129776636 129776949 -14009506 - AluSx SINE Alu 0 312 1 1240 181 69 11 chr12 129777062 129777339 -14009116 - AluJo SINE Alu -12 300 8 242 230 53 13 chr12 129777478 129777574 -14008881 - L1M LINE L1 -977 5356 5258 802 161 0 92 chr12 129777584 129777758 -14008697 - AluSg/x SINE Alu -3 309 152 408 236 34 40 chr12 129777781 129777929 -14008526 - LTR16A1 LTR ERVL -310 147 1 532 191 13 111 chr12 129778001 129778236 -14008219 + AluSq SINE Alu 1 212 -101 65 43 0 0 chr12 129778474 129778567 -14007888 + AT_rich Low_complexity Low_complexity 1 93 0 982 179 134 0 chr12 129778881 129779104 -14007351 + HSATI Satellite Satellite 311 563 -14 26 64 0 0 chr12 129779452 129779499 -14006956 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr12 129779711 129779744 -14006711 + AT_rich Low_complexity Low_complexity 1 33 0 965 113 0 0 chr12 129780091 129780224 -14006231 - AluSq/x SINE Alu -180 133 1 215 189 0 38 chr12 129780443 129780456 -14005999 + GA-rich Low_complexity Low_complexity 2 14 -38 1911 146 13 0 chr12 129780456 129780764 -14005691 + AluSx SINE Alu 1 312 0 215 189 0 38 chr12 129780764 129780803 -14005652 + GA-rich Low_complexity Low_complexity 14 52 0 1271 148 0 5 chr12 129780842 129781059 -14005396 - L1MB7 LINE L1 -235 5949 5734 313 286 10 20 chr12 129781129 129781227 -14005228 - MIR SINE MIR -165 97 1 818 218 112 0 chr12 129781258 129781446 -14005009 - LTR33 LTR ERVL -1 520 312 2239 156 99 5 chr12 129781587 129782011 -14004444 + LTR65 LTR ERV1 1 464 -205 213 162 27 0 chr12 129782290 129782327 -14004128 - MIR SINE MIR -77 185 148 1251 148 110 4 chr12 129782404 129782640 -14003815 + AluJo SINE Alu 34 294 -18 327 351 0 0 chr12 129782718 129782829 -14003626 - MIR SINE MIR -25 237 127 303 219 22 71 chr12 129782924 129783066 -14003389 + MIR SINE MIR 112 243 -19 929 106 14 7 chr12 129783613 129783754 -14002701 + AluSg1 SINE Alu 3 144 -165 1396 98 0 5 chr12 129784008 129784238 -14002217 + AluSg/x SINE Alu 87 315 0 199 256 13 64 chr12 129784295 129784373 -14002082 - L2 LINE L2 -248 3065 2992 779 298 94 3 chr12 129784407 129784716 -14001739 - LTR16C LTR ERVL -21 470 134 428 230 0 43 chr12 129784764 129784903 -14001552 + MER117 DNA MER1_type 15 147 -50 2129 76 10 17 chr12 129784945 129785235 -14001220 - AluSx SINE Alu -24 288 1 282 288 0 0 chr12 129785863 129785929 -14000526 + GA-rich Low_complexity Low_complexity 1 66 0 1645 142 9 68 chr12 129785962 129786287 -14000168 - AluJb SINE Alu -2 310 5 2353 74 0 0 chr12 129786642 129786939 -13999516 + AluY SINE Alu 1 297 -14 1344 144 0 36 chr12 129786971 129787193 -13999262 + AluJb SINE Alu 1 214 -98 2412 65 0 0 chr12 129787445 129787739 -13998716 - AluY SINE Alu -17 294 1 2249 82 13 3 chr12 129788055 129788361 -13998094 - AluSq SINE Alu -4 309 1 769 274 81 61 chr12 129788393 129788885 -13997570 - MLT1K LTR MaLR -2 586 85 499 336 7 7 chr12 129789135 129789281 -13997174 - MIR3 SINE MIR -50 158 13 315 370 58 0 chr12 129789918 129790056 -13996399 + MIR SINE MIR 107 252 -10 1023 262 73 31 chr12 129790061 129790274 -13996181 + LTR16C LTR ERVL 1 204 -287 1912 137 3 3 chr12 129790274 129790573 -13995882 - AluSx SINE Alu -13 299 1 1023 262 73 31 chr12 129790573 129790767 -13995688 + LTR16C LTR ERVL 204 491 0 1930 124 13 10 chr12 129791348 129791655 -13994800 - AluSx SINE Alu 0 312 5 2311 75 0 7 chr12 129791865 129792170 -13994285 + AluSg1 SINE Alu 1 303 -6 243 240 0 0 chr12 129792222 129792272 -13994183 + MIR SINE MIR 148 197 -65 2086 106 7 3 chr12 129792513 129792805 -13993650 - AluSx SINE Alu -17 295 3 265 348 87 0 chr12 129793237 129793352 -13993103 + MIR SINE MIR 15 139 -123 2069 118 3 3 chr12 129793552 129793865 -13992590 + AluSq SINE Alu 1 313 0 460 233 81 45 chr12 129794059 129794277 -13992178 - MIR SINE MIR -14 248 60 1770 143 3 17 chr12 129794622 129794757 -13991698 + AluJb SINE Alu 1 136 -176 2375 88 0 0 chr12 129794757 129795065 -13991390 + AluSc SINE Alu 1 308 -1 1770 143 3 17 chr12 129795065 129795230 -13991225 + AluJb SINE Alu 136 297 -15 2105 125 3 3 chr12 129795302 129795614 -13990841 - AluSx SINE Alu 0 312 1 707 278 29 37 chr12 129795727 129795968 -13990487 + MIR SINE MIR 14 252 -10 183 80 0 0 chr12 129795968 129795993 -13990462 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1634 185 0 3 chr12 129796708 129797011 -13989444 + AluJo SINE Alu 1 302 -10 241 266 32 32 chr12 129797074 129797168 -13989287 + MER89 LTR ERV1 1 94 -465 * 1408 196 84 38 chr12 129797137 129797484 -13988971 + MER89 LTR ERV1 197 559 0 1481 179 7 39 chr12 129798032 129798247 -13988208 - MLT1A1 LTR MaLR 0 365 159 2077 113 0 13 chr12 129798247 129798557 -13987898 - AluSg SINE Alu -4 306 1 1481 179 7 39 chr12 129798557 129798620 -13987835 - MLT1A1 LTR MaLR -206 159 96 2325 114 79 30 chr12 129798620 129798989 -13987466 + MER48 LTR ERV1 1 387 0 377 158 0 0 chr12 129798989 129799046 -13987409 - MLT1A1 LTR MaLR -273 101 45 300 118 39 0 chr12 129799048 129799099 -13987356 + MER65A LTR ERV1 3 55 -390 323 252 27 36 chr12 129799292 129799403 -13987052 + MER65A LTR ERV1 328 437 -8 276 93 93 0 chr12 129799417 129799460 -13986995 - MLT1A1 LTR MaLR -318 47 1 221 216 20 0 chr12 129799617 129799668 -13986787 - MER5B DNA MER1_type -74 104 53 1114 79 0 0 chr12 129799668 129799807 -13986648 - AluSg SINE Alu -169 141 3 2182 107 0 3 chr12 129799820 129800120 -13986335 - AluSg SINE Alu -11 299 1 340 191 0 29 chr12 129800122 129800190 -13986265 - MER5A DNA MER1_type -115 74 9 305 285 9 57 chr12 129800208 129800345 -13986110 - MER5A DNA MER1_type -46 138 2 280 250 226 16 chr12 129800359 129800483 -13985972 + MIR3 SINE MIR 36 185 -23 259 232 11 60 chr12 129800866 129801051 -13985404 + (CAAA)n Simple_repeat Simple_repeat 4 179 0 193 93 27 80 chr12 129801157 129801232 -13985223 + (CAAAAA)n Simple_repeat Simple_repeat 4 74 0 1541 155 13 62 chr12 129801232 129801536 -13984919 + AluJb SINE Alu 24 312 0 283 115 115 0 chr12 129801536 129801597 -13984858 + L1MB8 LINE L1 6103 6170 -8 2354 157 26 52 chr12 129801608 129801978 -13984477 - L1MB7 LINE L1 -16 6168 5815 2370 110 0 3 chr12 129801978 129802287 -13984168 + AluSx SINE Alu 1 308 -4 2354 157 26 52 chr12 129802287 129802451 -13984004 - L1MB7 LINE L1 -369 5815 5648 508 156 0 10 chr12 129802451 129802547 -13983908 - MER96B DNA MER1_type? -284 133 39 1843 146 0 51 chr12 129802549 129802684 -13983771 + AluJo SINE Alu 2 142 -170 2225 97 0 10 chr12 129802684 129802973 -13983482 + AluSx SINE Alu 1 286 -26 241 47 47 0 chr12 129802973 129803016 -13983439 + (CA)n Simple_repeat Simple_repeat 2 46 0 1843 146 0 51 chr12 129803016 129803194 -13983261 + AluJo SINE Alu 140 300 -12 555 247 44 16 chr12 129803250 129803432 -13983023 + MIR SINE MIR 66 252 -10 244 378 40 0 chr12 129805398 129805546 -13980909 - MIR SINE MIR -24 238 85 245 281 10 10 chr12 129806679 129806775 -13979680 + MIR SINE MIR 41 136 -72 530 309 169 18 chr12 129806844 129807229 -13979226 + L2 LINE L2 2840 3282 -31 2243 96 6 13 chr12 129807397 129807711 -13978744 - AluSx SINE Alu 0 312 1 435 283 228 0 chr12 129807835 129808019 -13978436 + MIR SINE MIR 37 262 0 313 295 25 41 chr12 129808025 129808147 -13978308 - MIR SINE MIR -63 145 26 396 226 10 10 chr12 129808253 129808355 -13978100 - MIR SINE MIR -61 201 100 333 318 136 28 chr12 129808612 129808826 -13977629 - MIR SINE MIR 0 262 26 2325 120 0 0 chr12 129808875 129809184 -13977271 - AluSx SINE Alu -3 309 1 282 29 0 0 chr12 129809255 129809290 -13977165 + (TG)n Simple_repeat Simple_repeat 2 36 0 240 227 15 0 chr12 129809291 129809357 -13977098 + GA-rich Low_complexity Low_complexity 2 68 0 183 80 0 0 chr12 129809507 129809532 -13976923 + (CTG)n Simple_repeat Simple_repeat 2 26 0 655 183 8 8 chr12 129810246 129810377 -13976078 + FLAM_C SINE Alu 1 131 -2 1861 115 17 41 chr12 129810502 129810797 -13975658 - AluSx SINE Alu -24 288 1 227 268 0 0 chr12 129810828 129810884 -13975571 + GA-rich Low_complexity Low_complexity 1 56 0 2606 61 0 3 chr12 129811101 129811412 -13975043 + AluY SINE Alu 1 310 -1 216 97 0 0 chr12 129811500 129811531 -13974924 + (TA)n Simple_repeat Simple_repeat 1 31 0 405 0 0 0 chr12 129811670 129811715 -13974740 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 353 109 0 0 chr12 129811756 129811811 -13974644 - Alu SINE Alu 0 302 248 1014 134 12 2 chr12 129811890 129812401 -13974054 + (TCCA)n Simple_repeat Simple_repeat 1 516 0 222 277 28 156 chr12 129813062 129813161 -13973294 - L2 LINE L2 -8 3264 3187 2330 96 0 7 chr12 129813161 129813462 -13972993 - AluSq SINE Alu -14 299 1 222 277 28 156 chr12 129813462 129813503 -13972952 - L2 LINE L2 -85 3187 3142 363 294 25 17 chr12 129813732 129813851 -13972604 - L2 LINE L2 -232 3040 2921 2483 54 40 0 chr12 129814034 129814331 -13972124 - AluY SINE Alu -2 309 1 577 233 23 16 chr12 129814362 129814491 -13971964 + FLAM_A SINE Alu 1 130 -3 297 143 30 60 chr12 129814507 129814640 -13971815 + GA-rich Low_complexity Low_complexity 4 132 0 840 276 85 25 chr12 129814737 129815182 -13971273 - L1MC4a LINE L1 -1806 6002 5531 2199 111 0 0 chr12 129815214 129815494 -13970961 + AluSx SINE Alu 1 280 -32 339 85 0 0 chr12 129815500 129815547 -13970908 + (TATG)n Simple_repeat Simple_repeat 1 47 0 1157 248 76 7 chr12 129815942 129816244 -13970211 - MLT1K LTR MaLR 0 588 266 642 233 16 0 chr12 129816280 129816409 -13970046 - FLAM_A SINE Alu 0 133 3 434 165 165 0 chr12 129816419 129816534 -13969921 - L1ME3A LINE L1 -5 6165 6032 956 186 0 17 chr12 129816534 129816711 -13969744 + AluJo SINE Alu 1 174 -138 379 183 14 0 chr12 129817020 129817091 -13969364 + MIR SINE MIR 81 152 -110 588 299 0 0 chr12 129817091 129817258 -13969197 + MER117 DNA MER1_type 27 193 -4 335 254 176 21 chr12 129817792 129817934 -13968521 - MIR SINE MIR -51 211 48 618 152 53 0 chr12 129818447 129818717 -13967738 + (CACTC)n Simple_repeat Simple_repeat 1 284 0 327 159 53 0 chr12 129818732 129818845 -13967610 + (CACTC)n Simple_repeat Simple_repeat 4 122 0 448 181 47 0 chr12 129818869 129819040 -13967415 + (CACTC)n Simple_repeat Simple_repeat 2 180 0 598 112 59 12 chr12 129819065 129819235 -13967220 + (CACTC)n Simple_repeat Simple_repeat 1 178 0 585 102 66 12 chr12 129819423 129819590 -13966865 + (CACTC)n Simple_repeat Simple_repeat 2 177 0 192 62 42 42 chr12 129819604 129819652 -13966803 + (CACTC)n Simple_repeat Simple_repeat 2 49 0 510 172 38 19 chr12 129819681 129820107 -13966348 + (CACTC)n Simple_repeat Simple_repeat 1 434 0 276 103 29 15 chr12 129820128 129820196 -13966259 + (CAATT)n Simple_repeat Simple_repeat 2 70 0 276 352 48 9 chr12 129820198 129820303 -13966152 - L2 LINE L2 -4 3268 3160 433 256 118 10 chr12 129821052 129821247 -13965208 - L2 LINE L2 0 3313 3098 219 330 104 0 chr12 129821476 129821591 -13964864 - MIR3 SINE MIR -73 135 9 235 132 0 116 chr12 129821998 129822127 -13964328 + (TATAA)n Simple_repeat Simple_repeat 1 114 0 341 302 94 50 chr12 129822127 129822586 -13963869 - L1MCa LINE L1 -154 6247 1933 2168 106 7 0 chr12 129822596 129822871 -13963584 - AluSx SINE Alu -23 289 13 979 176 12 0 chr12 129823722 129823887 -13962568 - FRAM SINE Alu -14 162 1 1684 147 58 41 chr12 129823923 129824092 -13962363 - AluJo SINE Alu -15 297 119 204 40 0 0 chr12 129824092 129824117 -13962338 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1684 147 58 41 chr12 129824117 129824239 -13962216 - AluJo SINE Alu -193 119 1 2285 110 0 22 chr12 129824446 129824763 -13961692 - AluSx SINE Alu -2 310 1 730 172 0 31 chr12 129824806 129824934 -13961521 + AluJb SINE Alu 3 126 -186 2130 123 0 3 chr12 129824945 129825259 -13961196 + AluSx SINE Alu 1 313 0 380 208 0 0 chr12 129825306 129825383 -13961072 + MIR SINE MIR 183 259 -3 2143 119 30 0 chr12 129825840 129826143 -13960312 + AluSx SINE Alu 1 312 0 1994 86 82 14 chr12 129826207 129826498 -13959957 + AluY SINE Alu 1 311 0 1509 120 10 5 chr12 129826524 129826733 -13959722 + AluJb SINE Alu 87 296 -16 219 330 104 0 chr12 129827525 129827640 -13958815 - MIR3 SINE MIR -73 135 9 1056 208 63 44 chr12 129828194 129828260 -13958195 - MER46C DNA MER2_type -15 323 260 2320 85 16 19 chr12 129828260 129828567 -13957888 + AluSx SINE Alu 1 306 -6 1056 208 63 44 chr12 129828567 129828817 -13957638 - MER46C DNA MER2_type -78 260 1 601 231 20 14 chr12 129830177 129830324 -13956131 + Charlie8 DNA MER1_type 19 166 -2251 539 295 30 0 chr12 129830566 129830732 -13955723 - MIR SINE MIR -79 183 13 1426 148 175 15 chr12 129830735 129831072 -13955383 - MLT2C1 LTR ERVL -3 394 4 1764 132 38 21 chr12 129832975 129833262 -13953193 - AluJb SINE Alu -20 292 1 2226 139 3 0 chr12 129833277 129833587 -13952868 - AluSx SINE Alu -1 311 1 309 288 79 17 chr12 129834855 129835019 -13951436 + MIR SINE MIR 6 175 -62 361 279 95 58 chr12 129835321 129835583 -13950872 + L1M2 LINE L1 1720 3959 -2889 316 231 13 13 chr12 129835959 129836037 -13950418 + MIR SINE MIR 89 166 -96 844 153 0 8 chr12 129836064 129836195 -13950260 + AluJo SINE Alu 6 135 -177 1909 169 3 0 chr12 129836195 129836497 -13949958 + AluJo SINE Alu 1 303 -9 2509 77 0 0 chr12 129836912 129837209 -13949246 + AluY SINE Alu 1 297 -14 709 218 50 0 chr12 129837433 129837612 -13948843 - L1MD2 LINE L1 0 6359 6172 747 273 14 19 chr12 129837617 129837833 -13948622 + MIR SINE MIR 47 261 -1 939 169 37 16 chr12 129838162 129838351 -13948104 + MER20 DNA MER1_type 27 219 0 2302 120 0 0 chr12 129838387 129838686 -13947769 - AluSx SINE Alu -13 299 1 614 199 20 40 chr12 129839165 129839316 -13947139 + MER103 DNA DNA 8 155 -11 1867 176 8 32 chr12 129839357 129839414 -13947041 + MLT1A1 LTR MaLR 1 58 -307 1812 141 42 39 chr12 129839414 129839720 -13946735 + AluSx SINE Alu 1 307 -5 1867 176 8 32 chr12 129839720 129840036 -13946419 + MLT1A1 LTR MaLR 58 365 0 199 244 0 0 chr12 129840125 129840166 -13946289 + L2 LINE L2 3255 3295 -18 208 256 0 128 chr12 129840239 129840271 -13946184 + MIR SINE MIR 2 20 -242 2220 116 0 16 chr12 129840271 129840582 -13945873 + AluSx SINE Alu 1 306 -6 208 256 0 128 chr12 129840582 129840627 -13945828 + MIR SINE MIR 20 69 -193 917 224 14 9 chr12 129840633 129840847 -13945608 + MIR SINE MIR 47 261 -1 286 345 34 40 chr12 129840852 129841029 -13945426 + MIR SINE MIR 84 259 -3 356 276 48 0 chr12 129841226 129841331 -13945124 + L2 LINE L2 3162 3271 -1 187 170 0 43 chr12 129841458 129841505 -13944950 - MIR SINE MIR -33 229 185 357 232 34 17 chr12 129841526 129841703 -13944752 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 101 0 0 chr12 129841707 129841786 -13944669 + AT_rich Low_complexity Low_complexity 1 79 0 668 247 63 0 chr12 129841786 129841976 -13944479 - MIR SINE MIR -59 203 2 1133 255 146 35 chr12 129842118 129842822 -13943633 - L2 LINE L2 -2 3311 2509 2490 65 0 3 chr12 129842822 129843114 -13943341 + AluSc SINE Alu 1 291 -18 1133 255 146 35 chr12 129843114 129843206 -13943249 - L2 LINE L2 -804 2509 2429 457 211 57 32 chr12 129843558 129843717 -13942738 + MIR SINE MIR 15 179 -63 186 316 71 20 chr12 129843721 129843819 -13942636 + L2 LINE L2 3126 3228 -44 679 292 60 16 chr12 129844011 129844261 -13942194 + MIR SINE MIR 2 262 0 2239 110 0 13 chr12 129844285 129844584 -13941871 + AluSx SINE Alu 1 295 -17 2520 86 0 3 chr12 129844586 129844900 -13941555 + AluSq SINE Alu 1 313 0 1608 173 61 4 chr12 129844936 129845213 -13941242 + AluJb SINE Alu 1 293 -19 658 229 80 16 chr12 129845266 129845467 -13940988 - MIR SINE MIR -1 261 53 1366 206 71 89 chr12 129845620 129846114 -13940341 - Charlie4a DNA MER1_type 0 508 24 188 319 58 7 chr12 129846222 129846360 -13940095 - L2 LINE L2 -639 2675 2531 284 242 210 0 chr12 129846900 129847024 -13939431 - MIR3 SINE MIR -23 185 36 343 250 8 57 chr12 129847044 129847168 -13939287 + MER5A DNA MER1_type 21 138 -51 349 194 0 15 chr12 129847193 129847260 -13939195 + MER5A DNA MER1_type 9 74 -115 2391 104 0 0 chr12 129847262 129847561 -13938894 + AluSg SINE Alu 1 299 -11 1139 80 7 0 chr12 129847574 129847712 -13938743 + AluSg SINE Alu 3 141 -169 208 216 20 0 chr12 129847712 129847763 -13938692 + MER5B DNA MER1_type 53 104 -74 258 93 93 0 chr12 129847920 129847963 -13938492 + MLT1A1 LTR MaLR 1 47 -318 309 252 27 36 chr12 129847977 129848088 -13938367 - MER65A LTR ERV1 -8 437 328 305 98 39 0 chr12 129848281 129848332 -13938123 - MER65A LTR ERV1 -390 55 3 363 158 0 0 chr12 129848334 129848391 -13938064 + MLT1A1 LTR MaLR 45 101 -273 2221 114 79 30 chr12 129848391 129848760 -13937695 - MER48 LTR ERV1 0 387 1 1423 179 7 39 chr12 129848760 129848823 -13937632 + MLT1A1 LTR MaLR 96 159 -206 2270 113 0 10 chr12 129848823 129849132 -13937323 + AluSg SINE Alu 1 306 -4 1423 179 7 39 chr12 129849132 129849347 -13937108 + MLT1A1 LTR MaLR 159 365 0 1355 196 84 38 chr12 129849895 129850242 -13936213 - MER89 LTR ERV1 0 559 197 935 161 36 31 chr12 129850582 129850774 -13935681 + MER20 DNA MER1_type 27 219 0 2041 122 4 0 chr12 129850810 129851081 -13935374 - AluSx SINE Alu -13 299 28 1911 229 34 7 chr12 129851225 129851662 -13934793 + MER68 LTR ERV1 114 562 0 1958 194 33 50 chr12 129851671 129851946 -13934509 + L1M4 LINE L1 1101 1379 -5163 1790 208 49 18 chr12 129851946 129852399 -13934056 - MLT1C LTR MaLR 0 467 1 1958 194 33 50 chr12 129852399 129852700 -13933755 + L1M4 LINE L1 1379 1667 -4875 363 234 50 57 chr12 129852875 129853016 -13933439 - MER3 DNA MER1_type -68 141 2 1454 176 59 21 chr12 129853096 129853385 -13933070 + AluJb SINE Alu 11 310 -2 185 0 0 39 chr12 129854439 129854465 -13931990 + (TAAAAA)n Simple_repeat Simple_repeat 1 25 0 1732 190 57 16 chr12 129854466 129854850 -13931605 - L1M3 LINE L1 -496 5684 5285 1227 118 0 17 chr12 129854870 129855048 -13931407 - AluSg/x SINE Alu -1 309 135 472 239 26 71 chr12 129855054 129855097 -13931358 - L2 LINE L2 -244 3069 3026 2444 69 3 7 chr12 129855097 129855400 -13931055 - AluY SINE Alu -9 302 1 472 239 26 71 chr12 129855400 129855511 -13930944 - L2 LINE L2 -287 3026 2922 586 214 70 115 chr12 129855820 129856151 -13930304 + L1M4 LINE L1 1770 2085 -4559 228 286 77 0 chr12 129856155 129856246 -13930209 + MER69 DNA AcHobo 2420 2517 -9 2328 105 0 6 chr12 129856555 129856870 -13929585 + AluSq SINE Alu 1 313 0 1080 183 19 10 chr12 129857078 129857286 -13929169 + AluSg/x SINE Alu 77 286 -24 459 0 0 0 chr12 129857286 129857337 -13929118 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 539 167 0 11 chr12 129857368 129857458 -13928997 + AluSg/x SINE Alu 203 291 -19 3406 178 41 21 chr12 129857460 129857897 -13928558 - L1MB8 LINE L1 -17 6161 5702 2245 115 0 0 chr12 129857897 129858192 -13928263 + AluSx SINE Alu 1 295 -17 3406 178 41 21 chr12 129858192 129858479 -13927976 - L1MB8 LINE L1 -476 5702 5422 803 140 264 49 chr12 129858926 129859040 -13927415 - MER33 DNA MER1_type -2263 322 234 1877 92 104 0 chr12 129859040 129859291 -13927164 + AluSg SINE Alu 17 293 -17 803 140 264 49 chr12 129859291 129859441 -13927014 - MER33 DNA MER1_type -2351 234 1 23 0 0 0 chr12 129860106 129860129 -13926326 + AT_rich Low_complexity Low_complexity 1 23 0 2233 85 41 0 chr12 129860129 129860422 -13926033 + AluSp SINE Alu 1 305 -8 292 237 17 0 chr12 129860511 129860570 -13925885 + Charlie8 DNA MER1_type 1357 1416 -1001 275 236 50 50 chr12 129861536 129861676 -13924779 - L1ME4a LINE L1 -11 6110 5971 23 0 0 0 chr12 129861705 129861728 -13924727 + AT_rich Low_complexity Low_complexity 1 23 0 2393 90 3 0 chr12 129862150 129862451 -13924004 - AluSp SINE Alu -11 302 1 504 234 107 40 chr12 129862490 129862776 -13923679 - L1ME3 LINE L1 -221 5945 5626 346 256 101 105 chr12 129862773 129862935 -13923520 - L1ME3 LINE L1 -1005 5141 4978 * 2337 70 0 7 chr12 129862935 129863248 -13923207 - AluY SINE Alu 0 311 1 346 256 101 105 chr12 129863248 129863342 -13923113 - L1ME3 LINE L1 -1168 4978 4885 702 224 14 7 chr12 129863379 129863522 -13922933 - FRAM SINE Alu -31 145 2 825 117 69 21 chr12 129863832 129863977 -13922478 - L1MB3 LINE L1 -8 6175 6024 504 114 125 11 chr12 129863977 129864065 -13922390 - Tigger7 DNA MER2_type -1 2586 2489 * 1134 211 73 40 chr12 129864063 129864310 -13922145 - Tigger7 DNA MER2_type -466 267 13 3600 170 37 59 chr12 129864313 129864776 -13921679 - L1MB3 LINE L1 -144 6039 5567 2201 114 10 0 chr12 129864776 129865082 -13921373 - AluSx SINE Alu -1 311 3 3600 170 37 59 chr12 129865082 129865470 -13920985 - L1MB3 LINE L1 -616 5567 5223 2143 119 3 0 chr12 129865470 129865764 -13920691 - AluY SINE Alu -16 295 1 3600 170 37 59 chr12 129865764 129866045 -13920410 - L1MB3 LINE L1 -960 5223 4937 280 260 170 20 chr12 129866444 129866610 -13919845 - MIR SINE MIR -58 204 18 387 279 25 8 chr12 129866626 129866748 -13919707 - MER103 DNA DNA -7 159 36 2474 85 3 0 chr12 129867131 129867438 -13919017 - AluSp SINE Alu -5 308 1 1104 125 19 6 chr12 129868234 129868394 -13918061 - AluSg/x SINE Alu -14 298 137 3128 213 114 56 chr12 129868395 129868458 -13917997 - L1MB3 LINE L1 -2291 3855 3797 2393 105 0 0 chr12 129868458 129868771 -13917684 - AluSq SINE Alu 0 313 1 3128 213 114 56 chr12 129868771 129869426 -13917029 - L1MB3 LINE L1 -2349 3797 3182 348 24 0 0 chr12 129869426 129869467 -13916988 + (TG)n Simple_repeat Simple_repeat 2 42 0 3128 213 114 56 chr12 129869467 129869623 -13916832 - L1MB3 LINE L1 -2964 3182 3037 2570 67 0 13 chr12 129869623 129869938 -13916517 - AluY SINE Alu 0 311 1 3128 213 114 56 chr12 129869938 129870229 -13916226 - L1MB3 LINE L1 -3109 3037 2620 886 250 132 16 chr12 129870300 129870622 -13915833 - L1MEc LINE L1 -3913 2483 2093 1485 127 18 5 chr12 129870622 129870843 -13915612 - AluSg/x SINE Alu -7 303 80 886 250 132 16 chr12 129870843 129870968 -13915487 - L1MEc LINE L1 -4303 2093 1984 35 24 0 0 chr12 129870969 129871011 -13915444 + AT_rich Low_complexity Low_complexity 1 42 0 1084 266 172 23 chr12 129871012 129871474 -13914981 - MLT1G3 LTR MaLR 0 595 35 186 71 0 0 chr12 129871486 129871514 -13914941 + (CA)n Simple_repeat Simple_repeat 1 28 0 289 266 76 0 chr12 129871600 129871679 -13914776 - MLT1G3 LTR MaLR -510 85 1 3075 271 141 27 chr12 129871684 129871787 -13914668 - L1MEc LINE L1 -4450 1946 1856 2273 119 0 0 chr12 129871787 129872099 -13914356 - AluSx SINE Alu 0 312 1 3075 271 141 27 chr12 129872099 129872371 -13914084 - L1MEc LINE L1 -4540 1856 1616 198 0 0 0 chr12 129872371 129872393 -13914062 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2171 101 3 3 chr12 129872393 129872676 -13913779 - AluSg SINE Alu -25 285 3 3075 271 141 27 chr12 129872676 129873978 -13912477 - L1MEc LINE L1 -4779 1617 81 1537 168 72 42 chr12 129874047 129874178 -13912277 - MER2 DNA MER2_type -1 344 218 1251 130 88 9 chr12 129874178 129874394 -13912061 + MER46A DNA MER2_type 1 233 -3 1537 168 72 42 chr12 129874394 129874498 -13911957 - MER2 DNA MER2_type -127 218 119 2139 142 0 0 chr12 129874498 129874800 -13911655 - AluSq SINE Alu -11 302 1 1537 168 72 42 chr12 129874800 129874897 -13911558 - MER2 DNA MER2_type -226 119 1 2492 165 41 23 chr12 129874991 129875115 -13911340 - L1MB3 LINE L1 -7 6176 6056 1864 124 4 11 chr12 129875115 129875390 -13911065 - AluSx SINE Alu -4 308 36 2492 165 41 23 chr12 129875390 129875779 -13910676 - L1MB3 LINE L1 -127 6056 5654 2262 95 24 0 chr12 129875811 129876107 -13910348 - AluSp SINE Alu -10 303 1 1787 264 125 2 chr12 129876654 129877252 -13909203 + MER20B DNA MER1_type 1 672 -111 2250 109 16 0 chr12 129877487 129877790 -13908665 + AluSc SINE Alu 1 308 -1 230 173 0 39 chr12 129877842 129877894 -13908561 - MER5A DNA MER1_type -139 50 1 1195 168 38 14 chr12 129877991 129878200 -13908255 - AluJb SINE Alu -13 299 86 2265 103 3 7 chr12 129878220 129878522 -13907933 + AluSx SINE Alu 1 301 -11 1185 134 0 18 chr12 129878522 129878693 -13907762 + AluSg/x SINE Alu 132 299 -11 875 293 113 16 chr12 129879581 129880015 -13906440 + MLT1K LTR MaLR 1 476 0 2350 111 0 0 chr12 129880130 129880437 -13906018 - AluSx SINE Alu -5 307 1 192 182 0 0 chr12 129880508 129880552 -13905903 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 421 175 0 19 chr12 129880823 129880926 -13905529 + L1MA7 LINE L1 6191 6291 0 419 194 32 11 chr12 129880948 129881041 -13905414 - L1MB3 LINE L1 -489 5632 5538 1415 254 74 8 chr12 129881133 129881228 -13905227 + L1M4 LINE L1 4319 4406 -1740 1957 149 0 0 chr12 129881228 129881543 -13904912 + AluSx SINE Alu 1 315 0 1415 254 74 8 chr12 129881543 129881946 -13904509 + L1M4 LINE L1 4406 4851 -1295 473 332 50 17 chr12 129882084 129882126 -13904329 - MIR SINE MIR -11 251 212 1832 161 7 19 chr12 129882126 129882436 -13904019 - AluJb SINE Alu -6 306 1 473 332 50 17 chr12 129882436 129882631 -13903824 - MIR SINE MIR -50 212 6 304 257 0 0 chr12 129882652 129882722 -13903733 - L2 LINE L2 -18 3295 3226 309 227 0 0 chr12 129882790 129882856 -13903599 + L2 LINE L2 3207 3272 0 346 163 0 0 chr12 129883231 129883280 -13903175 + FLAM SINE Alu 74 122 -11 2162 89 0 86 chr12 129883373 129883700 -13902755 - AluSx SINE Alu -13 299 1 479 246 0 18 chr12 129884284 129884394 -13902061 - FRAM SINE Alu -10 166 59 2249 79 7 0 chr12 129884889 129885166 -13901289 - AluSp SINE Alu -34 279 1 538 200 8 24 chr12 129885167 129885292 -13901163 + L1MA10 LINE L1 6210 6332 -2 2159 124 53 31 chr12 129885771 129886127 -13900328 - THE1B LTR MaLR 0 364 1 2050 135 0 13 chr12 129886164 129886468 -13899987 + AluSx SINE Alu 1 300 -12 317 258 144 0 chr12 129886622 129886719 -13899736 + MIR SINE MIR 22 132 -130 816 178 58 31 chr12 129887356 129887404 -13899051 - MLT1B LTR MaLR 0 390 345 2162 138 0 10 chr12 129887404 129887715 -13898740 - AluSx SINE Alu -4 308 1 816 178 58 31 chr12 129887715 129887857 -13898598 - MLT1B LTR MaLR -45 345 195 2208 121 3 3 chr12 129887877 129888190 -13898265 - AluSq SINE Alu 0 313 1 2275 128 0 0 chr12 129888197 129888509 -13897946 - AluSx SINE Alu 0 312 1 662 180 16 0 chr12 129888567 129888695 -13897760 - MIR SINE MIR -128 134 5 469 249 23 1 chr12 129889108 129889281 -13897174 + L1MDa LINE L1 1327 1502 -5038 397 92 0 11 chr12 129889285 129889353 -13897102 + AluSg/x SINE Alu 83 133 -167 2142 117 0 0 chr12 129889353 129889666 -13896789 + AluSx SINE Alu 2 314 0 677 216 10 81 chr12 129889666 129889779 -13896676 + L1MDa LINE L1 2332 2451 -4089 1878 149 3 3 chr12 129889779 129890075 -13896380 + AluSq SINE Alu 1 296 -17 677 216 10 81 chr12 129890075 129890294 -13896161 + L1MDa LINE L1 2451 2603 -3937 946 92 0 0 chr12 129890395 129890514 -13895941 + AluSg/x SINE Alu 181 299 -13 428 216 87 0 chr12 129890657 129890779 -13895676 - MIR SINE MIR -65 143 59 2170 122 0 3 chr12 129890896 129891192 -13895263 - AluSx SINE Alu -17 295 1 21 0 0 0 chr12 129891224 129891245 -13895210 + AT_rich Low_complexity Low_complexity 1 21 0 2211 121 0 0 chr12 129891248 129891545 -13894910 - AluSx SINE Alu -15 297 1 1031 151 17 0 chr12 129891546 129891725 -13894730 + L1MB7 LINE L1 5789 5970 -214 706 190 67 87 chr12 129891853 129892004 -13894451 - MLT1D LTR MaLR -314 191 43 2080 112 10 3 chr12 129892004 129892298 -13894157 - AluSp SINE Alu -16 297 2 706 190 67 87 chr12 129892298 129892341 -13894114 - MLT1D LTR MaLR -462 43 1 214 317 162 21 chr12 129892399 129892541 -13893914 - MIR SINE MIR -92 170 9 357 148 11 57 chr12 129892690 129892778 -13893677 + AluJ/FLAM SINE Alu 14 97 -205 2379 96 3 0 chr12 129893211 129893514 -13892941 - AluSg SINE Alu -6 304 1 1478 207 3 3 chr12 129893744 129894034 -13892421 - AluJb SINE Alu -10 302 13 218 253 12 66 chr12 129894137 129894303 -13892152 + G-rich Low_complexity Low_complexity 4 160 0 405 119 71 127 chr12 129894573 129894699 -13891756 + HAL1 LINE L1 1275 1393 -1114 2336 88 0 19 chr12 129895019 129895327 -13891128 - AluSx SINE Alu -10 302 1 297 274 70 19 chr12 129895669 129895826 -13890629 - MER77 LTR ERV1 -31 574 410 2404 50 0 53 chr12 129895989 129896309 -13890146 - AluY SINE Alu -8 303 1 32 0 0 0 chr12 129896599 129896631 -13889824 + AT_rich Low_complexity Low_complexity 1 32 0 912 230 32 108 chr12 129896658 129896886 -13889569 - L1ME3 LINE L1 -42 6120 5876 2245 98 0 3 chr12 129896886 129897173 -13889282 - AluSg SINE Alu -24 286 1 912 230 32 108 chr12 129897173 129897193 -13889262 - L1ME3 LINE L1 -286 5876 5856 600 199 7 44 chr12 129897193 129897329 -13889126 - FLAM_A SINE Alu -2 131 1 912 230 32 108 chr12 129897329 129897449 -13889006 - L1ME3 LINE L1 -306 5856 5779 2417 91 0 0 chr12 129897715 129898022 -13888433 - AluSg SINE Alu -3 307 1 632 177 113 0 chr12 129898223 129898347 -13888108 + MLT1E1 LTR MaLR 447 584 -70 1563 186 19 16 chr12 129898354 129898665 -13887790 - AluJo SINE Alu 0 312 1 855 135 8 0 chr12 129898670 129898803 -13887652 - AluJo SINE Alu -178 134 1 258 250 31 0 chr12 129898808 129898872 -13887583 + MLT1E1 LTR MaLR 558 623 -1 1410 124 44 8 chr12 129899287 129899536 -13886919 - L1MA4 LINE L1 0 6300 6043 2193 116 3 13 chr12 129899536 129899839 -13886616 - AluSx SINE Alu -12 300 1 620 199 52 115 chr12 129899936 129899984 -13886471 - L1MC5 LINE L1 -439 7522 7473 2055 83 4 0 chr12 129899984 129900236 -13886219 - AluSp SINE Alu -60 253 1 620 199 52 115 chr12 129900236 129900473 -13885982 - L1MC5 LINE L1 -488 7473 7255 1903 176 0 3 chr12 129900500 129900802 -13885653 - AluJo SINE Alu -11 301 1 262 306 107 110 chr12 129901042 129901198 -13885257 + L2 LINE L2 2825 2980 -292 2057 73 31 0 chr12 129901198 129901459 -13884996 - AluSx SINE Alu -39 273 5 262 306 107 110 chr12 129901459 129901749 -13884706 + L2 LINE L2 2980 3270 -2 2099 137 3 3 chr12 129901822 129902121 -13884334 - AluSx SINE Alu -13 299 1 2017 133 33 7 chr12 129902293 129902593 -13883862 + AluJo SINE Alu 2 309 -3 21 0 0 0 chr12 129902629 129902650 -13883805 + AT_rich Low_complexity Low_complexity 1 21 0 1579 113 0 0 chr12 129902817 129903029 -13883426 - AluSg/x SINE Alu -14 298 87 701 250 27 0 chr12 129903551 129903735 -13882720 + MER5A DNA MER1_type 1 189 0 305 253 0 0 chr12 129903973 129904052 -13882403 - MIR SINE MIR -110 152 74 1592 126 129 4 chr12 129904109 129904372 -13882083 - AluSx SINE Alu -16 296 1 240 352 84 11 chr12 129904438 129904617 -13881838 + L2 LINE L2 3025 3216 -97 2235 106 3 0 chr12 129904799 129905091 -13881364 + AluSx SINE Alu 1 293 -19 194 343 127 8 chr12 129905813 129906081 -13880374 + L2 LINE L2 2632 2931 -383 1810 89 0 0 chr12 129906091 129906315 -13880140 - AluSg/x SINE Alu -8 304 81 1002 173 6 22 chr12 129906355 129906534 -13879921 - FRAM SINE Alu 0 176 1 2517 57 10 0 chr12 129906550 129906847 -13879608 - AluY SINE Alu -11 300 1 3437 148 14 60 chr12 129906854 129907131 -13879324 - L1MC1 LINE L1 -12 6321 6033 2262 122 0 10 chr12 129907131 129907443 -13879012 - AluJb SINE Alu -3 309 1 3437 148 14 60 chr12 129907443 129907691 -13878764 - L1MC1 LINE L1 -300 6033 5835 2241 106 7 10 chr12 129907691 129907992 -13878463 - AluSx SINE Alu -12 300 1 3437 148 14 60 chr12 129907992 129908179 -13878276 - L1MC1 LINE L1 -498 5835 5641 244 299 70 61 chr12 129908181 129908395 -13878060 + L2 LINE L2 2971 3186 -86 758 262 33 5 chr12 129908768 129908978 -13877477 + MIR SINE MIR 46 261 -1 2291 88 0 3 chr12 129909013 129909327 -13877128 + AluSx SINE Alu 1 313 0 2399 115 0 0 chr12 129909604 129909916 -13876539 + AluSq SINE Alu 1 312 -1 2297 99 0 3 chr12 129909927 129910241 -13876214 + AluSx SINE Alu 1 312 0 208 226 21 21 chr12 129910423 129910516 -13875939 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 330 356 11 11 chr12 129910533 129910713 -13875742 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 * 385 325 30 0 chr12 129910692 129910858 -13875597 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 926 170 9 0 chr12 129910858 129911195 -13875260 + (TGGA)n Simple_repeat Simple_repeat 1 340 0 562 270 77 31 chr12 129911974 129912196 -13874259 - MIR SINE MIR 0 262 31 635 108 0 29 chr12 129913002 129913104 -13873351 + FRAM SINE Alu 71 169 -7 1986 163 0 13 chr12 129914190 129914497 -13871958 + AluSx SINE Alu 1 303 -9 558 233 148 29 chr12 129915063 129915287 -13871168 + MIR SINE MIR 9 252 -10 1156 140 25 10 chr12 129915349 129915549 -13870906 - MER3 DNA MER1_type -4 205 3 780 275 24 24 chr12 129915555 129915668 -13870787 + MIR SINE MIR 5 117 -145 2360 105 3 0 chr12 129915668 129915972 -13870483 - AluSx SINE Alu -7 305 1 780 275 24 24 chr12 129915972 129916105 -13870350 + MIR SINE MIR 116 251 -11 222 118 0 0 chr12 129916111 129916145 -13870310 + (TTA)n Simple_repeat Simple_repeat 2 35 0 189 171 0 0 chr12 129916729 129916764 -13869691 + (CA)n Simple_repeat Simple_repeat 1 35 0 2049 94 4 22 chr12 129917162 129917437 -13869018 - AluSx SINE Alu -42 270 1 245 258 152 0 chr12 129917501 129917567 -13868888 - Charlie8 DNA MER1_type -2339 78 3 2125 102 11 0 chr12 129918732 129919054 -13867401 + AluSx SINE Alu 1 325 0 683 277 27 23 chr12 129919077 129919297 -13867158 + MIR SINE MIR 29 249 -13 225 267 0 0 chr12 129919306 129919351 -13867104 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 341 311 99 25 chr12 129919762 129919923 -13866532 + L3 LINE CR1 1374 1546 -31 316 275 66 0 chr12 129920027 129920118 -13866337 + MIR SINE MIR 45 141 -67 603 217 126 23 chr12 129920351 129920526 -13865929 - MIR SINE MIR 0 262 70 239 283 11 87 chr12 129920916 129921008 -13865447 + MIR3 SINE MIR 70 154 -54 366 184 0 0 chr12 129922506 129922582 -13863873 + (CA)n Simple_repeat Simple_repeat 1 76 0 506 320 122 11 chr12 129923187 129923465 -13862990 + L1MC4a LINE L1 5856 6164 -1644 416 247 97 75 chr12 129923916 129924050 -13862405 - L1MC5 LINE L1 -72 7889 7748 1249 195 89 31 chr12 129924050 129924399 -13862056 - MER93b LTR ERV1 0 373 5 416 247 97 75 chr12 129924399 129924450 -13862005 - L1MC5 LINE L1 -213 7748 7700 2335 76 3 20 chr12 129924451 129924754 -13861701 + AluSq SINE Alu 2 299 -14 199 261 137 35 chr12 129924854 129925153 -13861302 + L2 LINE L2 1617 1993 -1321 531 214 191 0 chr12 129925169 129925337 -13861118 - MIR SINE MIR -17 245 46 351 299 118 36 chr12 129925357 129925578 -13860877 + L2 LINE L2 2019 2257 -1057 2374 110 0 0 chr12 129925641 129925940 -13860515 + AluSx SINE Alu 1 299 -13 264 286 89 18 chr12 129926040 129926152 -13860303 - L2 LINE L2 -1706 1608 1489 461 240 0 33 chr12 129928711 129928832 -13857623 - MIR SINE MIR -62 146 30 378 0 0 0 chr12 129929349 129929391 -13857064 + (TG)n Simple_repeat Simple_repeat 1 42 0 294 185 77 25 chr12 129929630 129929738 -13856717 - MIR SINE MIR -10 198 85 2004 120 28 14 chr12 129929919 129930203 -13856252 + AluSg SINE Alu 5 292 -18 690 202 0 16 chr12 129930214 129930343 -13856112 + FLAM_C SINE Alu 1 127 -6 189 213 0 0 chr12 129931148 129931195 -13855260 + (TA)n Simple_repeat Simple_repeat 2 48 0 2328 91 0 0 chr12 129932616 129932902 -13853553 + AluSg SINE Alu 17 302 -8 206 281 211 26 chr12 129935849 129935963 -13850492 - L2 LINE L2 -797 2517 2383 2401 76 3 0 chr12 129936777 129937067 -13849388 + AluSx SINE Alu 1 291 -21 467 346 90 26 chr12 129937192 129937458 -13848997 + L3 LINE CR1 435 717 -860 843 191 61 0 chr12 129938489 129938636 -13847819 - FRAM SINE Alu -17 159 4 854 239 125 59 chr12 129938776 129938931 -13847524 + L1ME LINE L1 373 516 -5554 2686 48 0 10 chr12 129938931 129939245 -13847210 - AluY SINE Alu 0 311 1 1593 181 17 37 chr12 129939252 129939550 -13846905 - AluJo SINE Alu -20 292 1 854 239 125 59 chr12 129939550 129939597 -13846858 + L1ME LINE L1 521 563 -5507 186 71 0 0 chr12 129939597 129939625 -13846830 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 854 239 125 59 chr12 129939625 129939957 -13846498 + L1ME LINE L1 563 952 -5118 335 290 100 0 chr12 129939969 129940069 -13846386 - MER58B DNA MER1_type -2 339 230 790 264 110 39 chr12 129940110 129940572 -13845883 + L1ME LINE L1 1008 1502 -4759 * 1868 150 20 20 chr12 129940576 129940882 -13845573 + AluJo SINE Alu 1 306 -6 1946 165 75 68 chr12 129940882 129940966 -13845489 + L1MB7 LINE L1 5197 5279 -905 2647 40 3 0 chr12 129940966 129941265 -13845190 + AluY SINE Alu 1 300 -11 1946 165 75 68 chr12 129941265 129941356 -13845099 + L1MB7 LINE L1 5279 5368 -816 2299 92 0 7 chr12 129941356 129941651 -13844804 + AluSc SINE Alu 1 293 -16 441 0 0 0 chr12 129941654 129941703 -13844752 + (CA)n Simple_repeat Simple_repeat 2 50 0 1946 165 75 68 chr12 129941703 129941871 -13844584 + L1MB7 LINE L1 5369 5534 -650 2036 110 16 38 chr12 129941871 129942189 -13844266 + AluSx SINE Alu 1 311 -1 1946 165 75 68 chr12 129942189 129942458 -13843997 + L1MB7 LINE L1 5534 5827 -357 25 31 0 0 chr12 129942575 129942607 -13843848 + AT_rich Low_complexity Low_complexity 1 32 0 374 284 29 49 chr12 129942878 129943121 -13843334 + L2 LINE L2 2470 2707 -607 1075 120 19 0 chr12 129943129 129943287 -13843168 - AluSg/x SINE Alu -27 285 125 1623 103 5 0 chr12 129943387 129943601 -13842854 + AluSg/x SINE Alu 87 301 -11 636 175 32 0 chr12 129943601 129943727 -13842728 - AluJo/FLAM SINE Alu -172 130 1 1283 202 142 5 chr12 129944053 129944420 -13842035 + MLT1D LTR MaLR 1 417 -88 361 51 0 34 chr12 129944489 129944548 -13841907 - FLAM_A SINE Alu 0 133 77 * 465 169 0 0 chr12 129944545 129944628 -13841827 + MLT1D LTR MaLR 423 505 0 2089 91 7 33 chr12 129944942 129945074 -13841381 + AluSq SINE Alu 2 136 -167 7318 46 11 16 chr12 129945074 129946707 -13839748 + SVA Other Other 2 1395 0 2089 91 7 33 chr12 129946707 129946879 -13839576 + AluSq SINE Alu 136 300 -3 519 160 0 40 chr12 129946946 129947046 -13839409 + FLAM_A SINE Alu 30 125 -17 26 0 0 0 chr12 129947046 129947072 -13839383 + AT_rich Low_complexity Low_complexity 1 26 0 1733 138 9 63 chr12 129947074 129947392 -13839063 + AluJb SINE Alu 5 305 -7 2251 104 3 10 chr12 129948056 129948364 -13838091 + AluSg SINE Alu 1 306 -4 2352 102 0 0 chr12 129948787 129949090 -13837365 + AluSx SINE Alu 9 311 -1 2250 86 13 25 chr12 129949529 129949843 -13836612 + AluSx SINE Alu 1 310 -2 2215 116 7 3 chr12 129950089 129950399 -13836056 + AluSx SINE Alu 1 311 -1 402 286 73 51 chr12 129950412 129950500 -13835955 + MIR SINE MIR 67 152 -110 2178 124 3 0 chr12 129950500 129950799 -13835656 + AluSq SINE Alu 1 300 -13 402 286 73 51 chr12 129950799 129950888 -13835567 + MIR SINE MIR 152 248 -14 986 198 20 5 chr12 129951383 129951585 -13834870 + MER20 DNA MER1_type 13 217 -2 183 257 81 14 chr12 129951675 129951749 -13834706 + MIR SINE MIR 79 157 -105 447 263 166 23 chr12 129951912 129952129 -13834326 - MIR SINE MIR -3 259 12 182 238 24 0 chr12 129952675 129952717 -13833738 - L3 LINE CR1 -919 658 616 377 295 132 43 chr12 129952728 129953024 -13833431 + L2 LINE L2 2685 3004 -309 570 219 57 38 chr12 129953925 129954135 -13832320 + L1ME1 LINE L1 5947 6160 -6 2060 123 7 0 chr12 129954147 129954439 -13832016 + AluSq SINE Alu 1 294 -19 2461 70 10 3 chr12 129960165 129960464 -13825991 + AluY SINE Alu 1 301 -10 2214 118 0 7 chr12 129960470 129960775 -13825680 + AluSg SINE Alu 1 303 -7 2118 110 36 13 chr12 129960776 129961077 -13825378 + AluSg SINE Alu 1 308 -2 719 273 121 9 chr12 129961818 129962049 -13824406 - MIR SINE MIR 0 262 6 2632 70 3 0 chr12 129962500 129962812 -13823643 + AluSp SINE Alu 1 313 0 2011 137 0 10 chr12 129963132 129963425 -13823030 - AluJb SINE Alu -22 290 1 196 250 94 31 chr12 129963598 129963662 -13822793 - L2 LINE L2 -26 3246 3179 2134 133 3 0 chr12 129963715 129964016 -13822439 + AluSg SINE Alu 3 304 -6 308 344 61 8 chr12 129964639 129964770 -13821685 + MIR SINE MIR 117 254 -8 1357 178 63 7 chr12 129965479 129965765 -13820690 - MER58B DNA MER1_type -2 339 38 24 108 0 0 chr12 129967942 129967979 -13818476 + GC_rich Low_complexity Low_complexity 1 37 0 757 237 106 17 chr12 129968548 129968784 -13817671 - MIR SINE MIR 0 262 6 412 204 97 11 chr12 129968965 129969058 -13817397 + L2 LINE L2 3166 3266 -6 290 170 43 32 chr12 129969811 129969905 -13816550 + MER103 DNA DNA 60 154 -12 308 288 93 17 chr12 129970062 129970180 -13816275 + L1MC4a LINE L1 5768 5894 -1914 505 133 0 56 chr12 129970194 129970284 -13816171 - FRAM SINE Alu -19 157 73 26 30 0 0 chr12 129970284 129970317 -13816138 + AT_rich Low_complexity Low_complexity 1 33 0 2062 146 3 3 chr12 129970323 129970625 -13815830 + AluJb SINE Alu 1 302 -10 2401 96 3 0 chr12 129970854 129971157 -13815298 + AluSg SINE Alu 1 304 -6 2288 98 3 0 chr12 129971244 129971540 -13814915 - AluSg SINE Alu -13 297 1 2421 101 10 0 chr12 129971557 129971865 -13814590 - AluSx SINE Alu 0 312 2 532 171 0 0 chr12 129971961 129972043 -13814412 + AluJ/FLAM SINE Alu 2 83 -229 214 153 34 17 chr12 129972075 129972134 -13814321 + GA-rich Low_complexity Low_complexity 1 60 0 2047 131 7 0 chr12 129972697 129973008 -13813447 - AluSx SINE Alu 0 313 1 777 270 109 27 chr12 129973101 129973468 -13812987 + L1MC4a LINE L1 5536 5932 -1876 218 194 0 0 chr12 129973471 129973507 -13812948 + (TATG)n Simple_repeat Simple_repeat 3 38 0 349 289 10 10 chr12 129973514 129973611 -13812844 - L1MC4 LINE L1 -1339 6703 6607 2131 143 0 9 chr12 129973694 129974009 -13812446 + AluJb SINE Alu 1 312 0 552 290 45 17 chr12 129974187 129974363 -13812092 + MIR SINE MIR 3 183 -79 388 269 147 7 chr12 129975302 129975503 -13810952 + MIR3 SINE MIR 2 247 -15 312 255 28 110 chr12 129975533 129975639 -13810816 + MIR SINE MIR 20 133 -129 330 80 0 0 chr12 129975639 129975689 -13810766 + (TG)n Simple_repeat Simple_repeat 2 51 0 1826 147 0 4 chr12 129975693 129975958 -13810497 - AluJb SINE Alu -48 264 1 312 255 28 110 chr12 129975958 129975991 -13810464 + MIR SINE MIR 136 152 -110 198 0 0 0 chr12 129979246 129979268 -13807187 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 218 31 0 31 chr12 129981943 129981975 -13804480 + (TTC)n Simple_repeat Simple_repeat 3 33 0 217 280 220 15 chr12 129982895 129983027 -13803428 - MIR SINE MIR -101 161 3 416 182 26 0 chr12 129984944 129985021 -13801434 + L2 LINE L2 3194 3272 0 604 64 0 0 chr12 129985306 129985384 -13801071 - AluS SINE Alu -233 79 2 2387 99 3 3 chr12 129986133 129986446 -13800009 - AluSq SINE Alu 0 313 1 389 273 148 0 chr12 129986908 129987036 -13799419 + MIR SINE MIR 83 229 -33 874 143 0 8 chr12 129988013 129988146 -13798309 + FLAM_C SINE Alu 1 132 -1 21 36 0 0 chr12 129988146 129988174 -13798281 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 129989089 129989119 -13797336 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 283 121 54 chr12 129989859 129990025 -13796430 + MER5A DNA MER1_type 7 183 -6 253 314 83 71 chr12 129989882 129990051 -13796404 - MER5A DNA MER1_type -18 171 1 * 25 31 0 0 chr12 129990896 129990928 -13795527 + GC_rich Low_complexity Low_complexity 1 32 0 180 125 0 0 chr12 129990956 129990988 -13795467 + (CAG)n Simple_repeat Simple_repeat 3 34 0 343 204 48 48 chr12 129992085 129992188 -13794267 - MIR3 SINE MIR -53 155 53 500 161 282 13 chr12 129992285 129992434 -13794021 + MER53 DNA DNA 1 189 0 2216 106 23 3 chr12 129992762 129993065 -13793390 - AluSc SINE Alu 0 309 1 458 271 41 0 chr12 129993572 129993694 -13792761 + MIR SINE MIR 22 148 -114 1801 152 11 65 chr12 129993694 129993965 -13792490 - MER7A DNA MER2_type -2692 346 62 2235 103 0 0 chr12 129993965 129994246 -13792209 + AluSx SINE Alu 12 292 -20 1801 152 11 65 chr12 129994246 129994259 -13792196 - MER7A DNA MER2_type -2976 62 50 279 0 0 0 chr12 129994259 129994290 -13792165 + (CA)n Simple_repeat Simple_repeat 2 32 0 705 186 0 0 chr12 129994294 129994443 -13792012 - FLAM_C SINE Alu 0 149 1 1801 152 11 65 chr12 129994443 129994518 -13791937 - MER7A DNA MER2_type -2991 47 1 2163 135 7 0 chr12 129994524 129994827 -13791628 - AluSx SINE Alu -7 305 1 191 250 0 0 chr12 129994830 129994878 -13791577 + MIR SINE MIR 151 198 -64 1459 173 125 6 chr12 129994957 129995316 -13791139 + MER95 LTR ERV 30 431 0 2513 90 3 0 chr12 129995376 129995688 -13790767 + AluSp SINE Alu 1 313 0 2001 150 3 10 chr12 129995757 129996070 -13790385 - AluJo SINE Alu -1 311 1 469 124 36 153 chr12 129996111 129996150 -13790305 - MER50 LTR ERV1 -29 705 663 2251 108 3 0 chr12 129996150 129996436 -13790019 + AluSx SINE Alu 1 287 -25 469 124 36 153 chr12 129996436 129996533 -13789922 - MER50 LTR ERV1 -71 663 585 2372 91 0 3 chr12 129996542 129996839 -13789616 + AluSx SINE Alu 1 296 -16 2215 112 7 0 chr12 129996909 129997203 -13789252 - AluSx SINE Alu -16 296 1 1846 134 20 27 chr12 129997204 129997503 -13788952 - AluJb SINE Alu -2 310 14 2005 152 0 3 chr12 129998137 129998427 -13788028 - AluSx SINE Alu -17 295 7 2461 90 3 0 chr12 129998467 129998777 -13787678 - AluSp SINE Alu -2 311 1 345 281 18 35 chr12 129998866 129998980 -13787475 - MIR SINE MIR -69 193 82 599 261 20 7 chr12 129999031 129999184 -13787271 + MIR SINE MIR 22 176 -86 2138 125 3 7 chr12 129999229 129999533 -13786922 - AluSx SINE Alu -9 303 1 535 292 58 6 chr12 129999589 129999760 -13786695 + MIR SINE MIR 2 181 -81 352 286 41 10 chr12 130000499 130000597 -13785858 + MIR SINE MIR 81 181 -81 2045 141 0 31 chr12 130000616 130000935 -13785520 + AluJo SINE Alu 1 309 -3 2369 116 0 0 chr12 130000935 130001238 -13785217 + AluSx SINE Alu 1 303 -9 485 208 167 0 chr12 130001270 130001366 -13785089 - FLAM_A SINE Alu -30 112 1 331 263 51 3 chr12 130001404 130001529 -13784926 + MIR SINE MIR 10 146 -62 2374 113 3 0 chr12 130001596 130001906 -13784549 + AluSp SINE Alu 1 311 -2 603 144 102 0 chr12 130002072 130002190 -13784265 + MER3 DNA MER1_type 76 205 -4 321 129 16 48 chr12 130002151 130002213 -13784242 - MER3 DNA MER1_type -119 90 31 * 2200 123 0 0 chr12 130002233 130002526 -13783929 - AluSq SINE Alu -17 296 4 499 299 106 73 chr12 130002544 130002885 -13783570 - L2 LINE L2 -40 3273 2922 256 259 81 92 chr12 130002876 130002970 -13783485 - MIR SINE MIR -32 230 137 * 2064 139 0 34 chr12 130002970 130003293 -13783162 + AluSx SINE Alu 1 312 0 256 259 81 92 chr12 130003293 130003383 -13783072 - MIR SINE MIR -125 137 48 2134 87 6 53 chr12 130003393 130003715 -13782740 - AluSx SINE Alu -5 307 1 1770 167 3 10 chr12 130004128 130004422 -13782033 - AluJo SINE Alu -19 293 2 617 200 18 182 chr12 130004428 130004536 -13781919 - MIR SINE MIR -10 252 175 243 143 0 0 chr12 130004536 130004571 -13781884 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 617 200 18 182 chr12 130004571 130004703 -13781752 - MIR SINE MIR -87 175 23 2274 80 0 25 chr12 130004706 130005020 -13781435 - AluY SINE Alu -5 306 1 468 263 44 63 chr12 130005033 130005238 -13781217 - L1ME3A LINE L1 -8 6162 5962 2047 136 0 16 chr12 130005258 130005575 -13780880 - AluSx SINE Alu 0 312 1 595 205 52 117 chr12 130005672 130005720 -13780735 - L1MC5 LINE L1 -439 7522 7472 1953 83 4 0 chr12 130005720 130005972 -13780483 - AluSp SINE Alu -60 253 1 595 205 52 117 chr12 130005972 130006230 -13780225 - L1MC5 LINE L1 -489 7472 7236 1830 176 0 3 chr12 130006236 130006538 -13779917 - AluJo SINE Alu -11 301 1 373 324 103 105 chr12 130006778 130006934 -13779521 + L2 LINE L2 2825 2980 -292 1951 73 31 0 chr12 130006934 130007195 -13779260 - AluSx SINE Alu -39 273 5 373 324 103 105 chr12 130007195 130007485 -13778970 + L2 LINE L2 2980 3270 -2 1972 137 3 3 chr12 130007558 130007857 -13778598 - AluSx SINE Alu -13 299 1 1894 133 33 7 chr12 130008029 130008329 -13778126 + AluJo SINE Alu 2 309 -3 21 0 0 0 chr12 130008365 130008386 -13778069 + AT_rich Low_complexity Low_complexity 1 21 0 1493 113 0 0 chr12 130008553 130008765 -13777690 - AluSg/x SINE Alu -14 298 87 789 250 27 0 chr12 130009287 130009471 -13776984 + MER5A DNA MER1_type 1 189 0 315 253 0 0 chr12 130009709 130009788 -13776667 - MIR SINE MIR -110 152 74 1486 126 129 4 chr12 130009845 130010108 -13776347 - AluSx SINE Alu -16 296 1 258 352 84 11 chr12 130010174 130010353 -13776102 + L2 LINE L2 3025 3216 -97 2102 106 3 0 chr12 130010535 130010827 -13775628 + AluSx SINE Alu 1 293 -19 241 355 123 4 chr12 130011549 130011817 -13774638 + L2 LINE L2 2632 2931 -383 1711 89 0 0 chr12 130011827 130012051 -13774404 - AluSg/x SINE Alu -8 302 79 941 173 6 22 chr12 130012091 130012270 -13774185 - FRAM SINE Alu 0 176 1 2365 72 10 0 chr12 130012276 130012583 -13773872 - AluY SINE Alu -1 310 1 3862 151 14 44 chr12 130012590 130012867 -13773588 - L1MC1 LINE L1 -12 6321 6037 2125 122 0 10 chr12 130012867 130013179 -13773276 - AluJb SINE Alu -3 309 1 3862 151 14 44 chr12 130013179 130013415 -13773040 - L1MC1 LINE L1 -296 6037 5832 2096 121 6 10 chr12 130013415 130013728 -13772727 - AluSx SINE Alu 0 312 1 3862 151 14 44 chr12 130013728 130013915 -13772540 - L1MC1 LINE L1 -501 5832 5641 260 299 70 61 chr12 130013917 130014131 -13772324 + L2 LINE L2 2971 3186 -86 760 262 33 5 chr12 130014499 130014709 -13771746 + MIR SINE MIR 46 261 -1 2157 88 0 3 chr12 130014744 130015058 -13771397 + AluSx SINE Alu 1 313 0 2265 115 0 0 chr12 130015335 130015647 -13770808 + AluSq SINE Alu 1 312 -1 2161 99 0 3 chr12 130015658 130015972 -13770483 + AluSx SINE Alu 1 312 0 208 226 21 21 chr12 130016154 130016247 -13770208 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 330 356 11 11 chr12 130016264 130016444 -13770011 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 * 385 325 30 0 chr12 130016423 130016589 -13769866 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 926 170 9 0 chr12 130016589 130016926 -13769529 + (TGGA)n Simple_repeat Simple_repeat 1 340 0 582 270 77 31 chr12 130017705 130017927 -13768528 - MIR SINE MIR 0 262 31 680 108 0 29 chr12 130018733 130018835 -13767620 + FRAM SINE Alu 71 169 -7 1867 163 0 13 chr12 130019921 130020228 -13766227 + AluSx SINE Alu 1 303 -9 571 242 143 25 chr12 130020794 130021018 -13765437 + MIR SINE MIR 9 252 -10 1262 140 25 10 chr12 130021080 130021280 -13765175 - MER3 DNA MER1_type -4 205 3 799 275 24 24 chr12 130021286 130021399 -13765056 + MIR SINE MIR 5 117 -145 2226 105 3 0 chr12 130021399 130021703 -13764752 - AluSx SINE Alu -7 305 1 799 275 24 24 chr12 130021703 130021836 -13764619 + MIR SINE MIR 116 251 -11 222 118 0 0 chr12 130021842 130021876 -13764579 + (TTA)n Simple_repeat Simple_repeat 2 35 0 210 143 0 0 chr12 130022460 130022495 -13763960 + (CA)n Simple_repeat Simple_repeat 1 35 0 1923 94 4 22 chr12 130022893 130023168 -13763287 - AluSx SINE Alu -42 270 1 249 258 152 0 chr12 130023232 130023298 -13763157 - Charlie8 DNA MER1_type -2339 78 3 1997 102 11 0 chr12 130024463 130024785 -13761670 + AluSx SINE Alu 1 325 0 703 277 27 23 chr12 130024808 130025028 -13761427 + MIR SINE MIR 29 249 -13 225 267 0 0 chr12 130025037 130025082 -13761373 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 354 311 99 25 chr12 130025493 130025654 -13760801 + L3 LINE CR1 1374 1546 -31 317 277 72 0 chr12 130025742 130025852 -13760603 + MIR SINE MIR 23 141 -67 608 217 126 23 chr12 130026083 130026258 -13760197 - MIR SINE MIR 0 262 70 240 283 11 87 chr12 130026648 130026740 -13759715 + MIR3 SINE MIR 70 154 -54 366 184 0 0 chr12 130028238 130028314 -13758141 + (CA)n Simple_repeat Simple_repeat 1 76 0 198 282 58 48 chr12 130029361 130029393 -13757062 + MIR SINE MIR 43 73 -135 2078 128 0 0 chr12 130029393 130029691 -13756764 - AluSx SINE Alu -13 299 2 198 282 58 48 chr12 130029691 130029761 -13756694 + MIR SINE MIR 73 146 -62 343 288 86 40 chr12 130029874 130030096 -13756359 - L2 LINE L2 -40 3273 3042 446 247 193 7 chr12 130030238 130030388 -13756067 - MER5B DNA MER1_type 0 178 1 738 251 16 74 chr12 130030391 130030409 -13756046 + MIR SINE MIR 12 29 -233 2115 99 0 38 chr12 130030409 130030722 -13755733 + AluSx SINE Alu 1 301 -11 738 251 16 74 chr12 130030722 130030769 -13755686 + MIR SINE MIR 29 77 -185 842 87 71 24 chr12 130030769 130030896 -13755559 + FLAM_C SINE Alu 1 133 0 738 251 16 74 chr12 130030896 130031072 -13755383 + MIR SINE MIR 77 240 -22 1797 154 10 13 chr12 130031469 130031775 -13754680 + AluJo SINE Alu 1 305 -7 839 221 0 0 chr12 130032214 130032377 -13754078 - FRAM SINE Alu -13 163 1 257 172 0 172 chr12 130032378 130032440 -13754015 + MIR3 SINE MIR 68 103 -105 2033 126 3 0 chr12 130032440 130032734 -13753721 - AluSx SINE Alu -17 295 1 257 172 0 172 chr12 130032734 130032787 -13753668 + MIR3 SINE MIR 103 163 -45 1998 144 0 0 chr12 130033177 130033475 -13752980 + AluSx SINE Alu 1 298 -14 231 36 0 0 chr12 130033520 130033548 -13752907 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 475 281 101 7 chr12 130033997 130034200 -13752255 - MIR SINE MIR -14 248 30 220 235 159 76 chr12 130034416 130034548 -13751907 - MIR SINE MIR 0 262 120 808 156 8 8 chr12 130034552 130034680 -13751775 + FLAM_C SINE Alu 2 129 -14 225 0 0 0 chr12 130035271 130035296 -13751159 + (T)n Simple_repeat Simple_repeat 1 25 0 194 278 19 120 chr12 130035388 130035496 -13750959 + L2 LINE L2 3173 3269 -3 26 88 0 0 chr12 130037320 130037388 -13749067 + GC_rich Low_complexity Low_complexity 1 68 0 197 83 28 0 chr12 130037458 130037494 -13748961 + (CGCGG)n Simple_repeat Simple_repeat 1 37 0 191 30 0 61 chr12 130037724 130037757 -13748698 + (CCCCG)n Simple_repeat Simple_repeat 3 33 0 495 290 49 22 chr12 130038358 130038541 -13747914 + MIR SINE MIR 39 226 -36 499 153 12 12 chr12 130038740 130038825 -13747630 + AluSg1 SINE Alu 2 86 -223 487 291 52 12 chr12 130039438 130039610 -13746845 + MIR SINE MIR 48 226 -36 2203 102 23 0 chr12 130039808 130040113 -13746342 + AluSx SINE Alu 1 312 0 2166 76 0 4 chr12 130040191 130040468 -13745987 - AluSc SINE Alu -33 276 1 532 248 174 32 chr12 130041199 130041417 -13745038 - L2 LINE L2 0 3313 3065 844 173 0 8 chr12 130041425 130041558 -13744897 - FLAM_C SINE Alu -11 132 1 806 260 63 4 chr12 130041558 130041798 -13744657 - L2 LINE L2 -234 3079 2813 2362 56 0 37 chr12 130041798 130042120 -13744335 + AluY SINE Alu 1 310 -1 806 260 63 4 chr12 130042120 130042252 -13744203 - L2 LINE L2 -500 2813 2690 1649 172 0 23 chr12 130042254 130042556 -13743899 + AluJo SINE Alu 1 295 -17 230 376 70 25 chr12 130042646 130042888 -13743567 - L2 LINE L2 -213 3059 2807 1987 93 53 20 chr12 130043042 130043342 -13743113 - AluSx SINE Alu -2 310 1 280 339 127 0 chr12 130043437 130043555 -13742900 - L2 LINE L2 -1 3271 3139 2221 97 0 0 chr12 130043777 130044077 -13742378 + AluSx SINE Alu 1 300 -12 1709 184 0 0 chr12 130044813 130045107 -13741348 - AluJo SINE Alu -18 294 1 2116 116 3 0 chr12 130045173 130045466 -13740989 + AluSx SINE Alu 6 299 -13 261 154 77 0 chr12 130045475 130045540 -13740915 + L1ME3 LINE L1 6093 6162 0 2377 83 0 0 chr12 130045612 130045914 -13740541 - AluSc SINE Alu -7 302 1 831 153 0 29 chr12 130045917 130046054 -13740401 - AluJo/FLAM SINE Alu -169 133 1 317 204 91 0 chr12 130046087 130046175 -13740280 + L1ME2 LINE L1 6068 6163 -1 1890 94 4 0 chr12 130046394 130046648 -13739807 + AluSp SINE Alu 1 255 -58 1456 122 9 0 chr12 130046657 130046871 -13739584 + AluSq SINE Alu 1 216 -97 370 280 144 0 chr12 130047409 130047541 -13738914 - MIR SINE MIR -29 233 83 2258 99 3 3 chr12 130048003 130048316 -13738139 + AluSq SINE Alu 1 313 0 596 64 0 0 chr12 130049065 130049143 -13737312 + AluS SINE Alu 2 79 -233 395 182 26 0 chr12 130049428 130049505 -13736950 - L2 LINE L2 0 3272 3194 218 31 0 31 chr12 130052474 130052506 -13733949 + (GAA)n Simple_repeat Simple_repeat 3 33 0 198 0 0 0 chr12 130055181 130055203 -13731252 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 310 255 28 110 chr12 130058458 130058491 -13727964 - MIR SINE MIR -110 152 118 1698 147 0 4 chr12 130058491 130058756 -13727699 + AluJb SINE Alu 1 264 -48 330 80 0 0 chr12 130058760 130058810 -13727645 + (CA)n Simple_repeat Simple_repeat 2 51 0 310 255 28 110 chr12 130058810 130058916 -13727539 - MIR SINE MIR -147 115 20 381 269 147 7 chr12 130058946 130059147 -13727308 - MIR3 SINE MIR -15 247 2 550 290 45 17 chr12 130060086 130060262 -13726193 - MIR SINE MIR -79 183 3 1976 143 0 9 chr12 130060440 130060755 -13725700 - AluJb SINE Alu 0 312 1 344 289 10 10 chr12 130060838 130060935 -13725520 + L1MC4 LINE L1 6607 6703 -1339 218 194 0 0 chr12 130060942 130060978 -13725477 + (CATA)n Simple_repeat Simple_repeat 3 38 0 848 267 109 27 chr12 130060981 130061348 -13725107 - L1MC4a LINE L1 -1876 5932 5536 1907 131 7 0 chr12 130061441 130061752 -13724703 + AluSx SINE Alu 1 313 0 214 153 34 17 chr12 130062316 130062375 -13724080 + CT-rich Low_complexity Low_complexity 1 60 0 518 171 0 0 chr12 130062407 130062489 -13723966 - AluJ/FLAM SINE Alu -229 83 2 2242 102 10 0 chr12 130062585 130062890 -13723565 + AluSx SINE Alu 2 309 -3 2443 58 0 7 chr12 130062910 130063219 -13723236 + AluY SINE Alu 1 307 -4 5684 173 86 34 chr12 130063448 130064831 -13721624 + Charlie1a DNA MER1_type 1 1455 0 1700 143 14 34 chr12 130066225 130066519 -13719936 - AluJo SINE Alu -24 288 1 1209 173 5 5 chr12 130066798 130067018 -13719437 + AluJo SINE Alu 85 304 -8 1936 118 0 11 chr12 130067497 130067808 -13718647 + AluSx SINE Alu 1 308 0 22 0 0 0 chr12 130068147 130068169 -13718286 + AT_rich Low_complexity Low_complexity 1 22 0 1463 286 72 35 chr12 130068176 130068525 -13717930 + L1MC4a LINE L1 5415 5749 -2059 216 0 0 0 chr12 130068525 130068549 -13717906 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1463 286 72 35 chr12 130068549 130068892 -13717563 + L1MC4a LINE L1 5749 6133 -1675 231 240 98 77 chr12 130069368 130069502 -13716953 - L1MC5 LINE L1 -72 7889 7748 1328 195 89 31 chr12 130069502 130069851 -13716604 - MER93b LTR ERV1 0 373 5 231 240 98 77 chr12 130069851 130069899 -13716556 - L1MC5 LINE L1 -213 7748 7703 2186 76 3 20 chr12 130069903 130070207 -13716248 + AluSq SINE Alu 2 300 -13 248 227 167 65 chr12 130070304 130070603 -13715852 + L2 LINE L2 1617 1993 -1321 589 213 182 3 chr12 130070619 130070812 -13715643 - MIR SINE MIR -17 245 18 394 299 118 36 chr12 130070807 130071028 -13715427 + L2 LINE L2 2019 2257 -1057 * 2125 110 10 0 chr12 130071091 130071383 -13715072 + AluSx SINE Alu 1 295 -17 358 232 53 32 chr12 130071719 130071814 -13714641 + L2 LINE L2 3171 3267 -5 342 273 134 46 chr12 130071999 130072215 -13714240 - L2 LINE L2 -818 2496 2262 1798 145 3 33 chr12 130073239 130073543 -13712912 + AluJo SINE Alu 1 295 -17 356 165 38 63 chr12 130073639 130073718 -13712737 + MER116 DNA Mariner 3 79 -1 2277 92 0 0 chr12 130074153 130074457 -13711998 - AluY SINE Alu -7 304 1 299 300 64 0 chr12 130074928 130075038 -13711417 - L1ME LINE L1 -458 5663 5547 215 242 152 0 chr12 130075079 130075145 -13711310 - MIR3 SINE MIR -10 198 123 1406 163 81 27 chr12 130075145 130075440 -13711015 + AluJb SINE Alu 1 311 -1 23 0 0 0 chr12 130075554 130075577 -13710878 + AT_rich Low_complexity Low_complexity 1 23 0 256 240 62 10 chr12 130076054 130076150 -13710305 - L1ME LINE L1 -944 5202 5102 2151 91 13 7 chr12 130076223 130076531 -13709924 - AluY SINE Alu -1 310 1 837 101 54 23 chr12 130076534 130076663 -13709792 - AluJo/FLAM SINE Alu -169 133 1 682 212 110 0 chr12 130076672 130076818 -13709637 - FRAM SINE Alu -13 163 2 1930 113 3 71 chr12 130076822 130077148 -13709307 - AluSx SINE Alu -8 304 1 1846 150 3 10 chr12 130077228 130077541 -13708914 + AluJo SINE Alu 1 311 -1 2356 90 3 0 chr12 130077610 130077922 -13708533 - AluSp SINE Alu 0 313 1 1518 170 128 6 chr12 130077982 130078340 -13708115 - MER95 LTR ERV 0 431 30 192 250 0 0 chr12 130078419 130078467 -13707988 - MIR SINE MIR -64 198 151 2132 121 0 3 chr12 130078470 130078777 -13707678 + AluSx SINE Alu 1 306 -6 1942 125 0 4 chr12 130081423 130081724 -13704731 + AluSx SINE Alu 3 302 0 1566 151 81 0 chr12 130082969 130083240 -13703215 + AluSx SINE Alu 1 293 -19 271 301 129 18 chr12 130084336 130084499 -13701956 - L2 LINE L2 -3 3310 3130 2212 101 7 0 chr12 130084550 130084846 -13701609 + AluSq SINE Alu 1 298 -15 1750 275 212 26 chr12 130085218 130086414 -13700041 - L2 LINE L2 -40 3273 1840 1609 146 77 0 chr12 130086548 130086822 -13699633 + AluJo SINE Alu 1 295 -17 2201 114 0 0 chr12 130087024 130087323 -13699132 + AluSx SINE Alu 1 299 -13 279 250 107 36 chr12 130087423 130087535 -13698920 - L2 LINE L2 -1706 1608 1489 491 240 0 33 chr12 130090094 130090215 -13696240 - MIR SINE MIR -62 146 30 342 0 0 0 chr12 130090732 130090770 -13695685 + (TG)n Simple_repeat Simple_repeat 1 38 0 304 198 77 25 chr12 130091008 130091116 -13695339 - MIR SINE MIR -10 198 85 1848 120 28 14 chr12 130091297 130091580 -13694875 + AluSg SINE Alu 5 291 -19 721 202 0 16 chr12 130091591 130091720 -13694735 + FLAM_C SINE Alu 1 127 -6 189 213 0 0 chr12 130092525 130092572 -13693883 + (TA)n Simple_repeat Simple_repeat 2 48 0 2156 95 0 0 chr12 130093995 130094280 -13692175 + AluSg SINE Alu 17 301 -9 237 272 211 26 chr12 130097227 130097341 -13689114 - L2 LINE L2 -797 2517 2383 2246 76 3 0 chr12 130098155 130098445 -13688010 + AluSx SINE Alu 1 291 -21 480 346 90 26 chr12 130098570 130098836 -13687619 + L3 LINE CR1 435 717 -860 187 210 220 50 chr12 130098954 130099054 -13687401 - MIR SINE MIR -80 182 66 826 191 61 0 chr12 130099867 130100014 -13686441 - FRAM SINE Alu -17 159 4 896 246 99 58 chr12 130100154 130100313 -13686142 + L1ME LINE L1 373 524 -5546 2500 51 0 10 chr12 130100313 130100626 -13685829 - AluY SINE Alu -1 310 1 896 246 99 58 chr12 130100626 130100643 -13685812 + L1ME LINE L1 524 539 -5531 1446 184 17 28 chr12 130100643 130100931 -13685524 - AluJo SINE Alu -27 285 1 896 246 99 58 chr12 130100931 130100978 -13685477 + L1ME LINE L1 539 583 -5487 186 71 0 0 chr12 130100978 130101006 -13685449 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 896 246 99 58 chr12 130101006 130101337 -13685118 + L1ME LINE L1 583 952 -5118 350 288 119 0 chr12 130101349 130101467 -13684988 - MER58B DNA MER1_type -2 339 208 822 263 114 34 chr12 130101504 130101952 -13684503 + L1ME LINE L1 1019 1502 -4759 * 1714 150 20 20 chr12 130101956 130102262 -13684193 + AluJo SINE Alu 1 306 -6 2049 164 74 77 chr12 130102262 130102346 -13684109 + L1MB7 LINE L1 5198 5281 -903 2548 45 3 0 chr12 130102346 130102656 -13683799 + AluY SINE Alu 1 311 0 2049 164 74 77 chr12 130102656 130102750 -13683705 + L1MB7 LINE L1 5281 5374 -810 2256 89 0 0 chr12 130102750 130103042 -13683413 + AluSc SINE Alu 1 292 -17 279 0 0 0 chr12 130103047 130103078 -13683377 + (CA)n Simple_repeat Simple_repeat 2 32 0 2049 164 74 77 chr12 130103078 130103246 -13683209 + L1MB7 LINE L1 5378 5545 -639 1877 110 16 38 chr12 130103246 130103564 -13682891 + AluSx SINE Alu 1 311 -1 2049 164 74 77 chr12 130103564 130103833 -13682622 + L1MB7 LINE L1 5545 5827 -357 25 31 0 0 chr12 130103950 130103982 -13682473 + AT_rich Low_complexity Low_complexity 1 32 0 424 288 25 45 chr12 130104254 130104497 -13681958 + L2 LINE L2 2470 2707 -607 2022 108 3 10 chr12 130104498 130104793 -13681662 - AluSc SINE Alu -16 293 1 226 230 29 122 chr12 130104857 130104996 -13681459 + HsTC2 DNA Tc2 115 240 -1658 803 280 94 11 chr12 130105057 130105428 -13681027 + HsTC2 DNA Tc2 491 892 -1006 319 279 90 9 chr12 130105768 130105879 -13680576 - MER5A DNA MER1_type -7 182 63 3382 129 21 12 chr12 130105901 130106419 -13680036 - MER1A DNA MER1_type -4 523 1 673 273 163 5 chr12 130106615 130106824 -13679631 - MIR SINE MIR -19 243 2 2807 198 160 13 chr12 130107045 130107617 -13678838 + Charlie1a DNA MER1_type 2 739 -2022 2159 125 10 0 chr12 130107617 130107920 -13678535 - AluSq SINE Alu -7 306 1 2807 198 160 13 chr12 130107920 130108191 -13678264 + Charlie1a DNA MER1_type 739 969 -486 1179 183 34 115 chr12 130108195 130108517 -13677938 + AluJo SINE Alu 1 296 -16 1180 203 28 7 chr12 130108518 130108804 -13677651 + Charlie1a DNA MER1_type 964 1255 -200 2266 120 0 0 chr12 130108805 130109104 -13677351 - AluSx SINE Alu -13 299 1 2237 233 65 75 chr12 130109106 130109917 -13676538 + MER21B LTR ERV1 4 806 -57 644 160 160 11 chr12 130109932 130110113 -13676342 + Charlie1a DNA MER1_type 1247 1454 -1 853 160 0 0 chr12 130110842 130110973 -13675482 + MER58A DNA MER1_type 10 140 0 431 182 18 8 chr12 130110981 130111165 -13675290 - MER2 DNA MER2_type 0 345 122 609 135 43 85 chr12 130111196 130111337 -13675118 - MER2 DNA MER2_type -210 135 1 347 197 92 0 chr12 130111337 130111412 -13675043 + MER58A DNA MER1_type 142 223 -1 710 238 101 62 chr12 130111413 130111720 -13674735 - MER5C DNA MER1_type -5 319 1 1181 150 182 36 chr12 130111957 130112210 -13674245 - AluJo SINE Alu -11 291 2 2066 89 46 0 chr12 130112215 130112496 -13673959 - AluSx SINE Alu -18 294 1 1064 171 33 69 chr12 130112818 130113063 -13673392 + MER46A DNA MER2_type 1 236 0 244 184 41 0 chr12 130113232 130113281 -13673174 + L1ME LINE L1 5585 5635 -531 316 267 86 106 chr12 130113366 130113621 -13672834 - HAL1 LINE L1 -1201 1306 1057 1990 118 76 0 chr12 130113685 130113974 -13672481 - AluSq SINE Alu -2 311 1 23 33 0 0 chr12 130113988 130114018 -13672437 + AT_rich Low_complexity Low_complexity 1 30 0 5510 77 18 0 chr12 130114181 130114917 -13671538 - L1PA10 LINE L1 0 6168 5420 234 0 0 0 chr12 130115641 130115667 -13670788 + (A)n Simple_repeat Simple_repeat 1 26 0 317 284 37 15 chr12 130115703 130115837 -13670618 - MLT1L LTR MaLR -135 480 344 341 209 127 27 chr12 130115905 130115981 -13670474 - MLT1L LTR MaLR -372 243 151 1082 170 9 28 chr12 130115981 130116193 -13670262 - MER3 DNA MER1_type -1 208 1 341 209 127 27 chr12 130116193 130116226 -13670229 - MLT1L LTR MaLR -464 151 123 2137 117 3 25 chr12 130116448 130116765 -13669690 - AluSx SINE Alu -2 310 1 579 29 0 0 chr12 130118145 130118214 -13668241 + (TG)n Simple_repeat Simple_repeat 1 69 0 803 229 16 27 chr12 130118363 130118551 -13667904 + MER5A DNA MER1_type 4 189 0 2312 85 0 7 chr12 130118984 130119277 -13667178 + AluSq SINE Alu 1 291 -22 488 127 42 31 chr12 130119277 130119885 -13666570 + (TA)n Simple_repeat Simple_repeat 1 614 0 1211 198 81 45 chr12 130120045 130120278 -13666177 + MER119 DNA MER1_type 24 247 -336 2062 137 0 0 chr12 130120278 130120577 -13665878 + AluJb SINE Alu 1 299 -13 1211 198 81 45 chr12 130120577 130120790 -13665665 + MER119 DNA MER1_type 247 583 0 1624 176 178 11 chr12 130121110 130121543 -13664912 + MLT1D LTR MaLR 1 505 0 762 99 9 0 chr12 130121663 130121774 -13664681 - FLAM_A SINE Alu 0 142 31 964 182 19 53 chr12 130122982 130123191 -13663264 - AluJo SINE Alu -1 311 110 745 172 0 15 chr12 130124451 130124585 -13661870 + AluJo/FLAM SINE Alu 1 132 -170 1942 150 0 3 chr12 130124588 130124897 -13661558 + AluJb SINE Alu 1 308 0 21 0 0 0 chr12 130125463 130125484 -13660971 + AT_rich Low_complexity Low_complexity 1 21 0 365 255 137 0 chr12 130125931 130126033 -13660422 - L2 LINE L2 0 3313 3198 1373 153 9 5 chr12 130126056 130126272 -13660183 + AluSg/x SINE Alu 70 286 -24 387 0 0 0 chr12 130126272 130126315 -13660140 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 247 305 37 0 chr12 130126360 130126442 -13660013 - L2 LINE L2 -212 3060 2976 1105 269 193 79 chr12 130127481 130128207 -13658248 - L2 LINE L2 -317 2996 2106 1976 115 3 17 chr12 130128207 130128502 -13657953 - AluSx SINE Alu -21 291 1 1105 269 193 79 chr12 130128502 130128867 -13657588 - L2 LINE L2 -1207 2106 1784 1721 190 16 25 chr12 130129327 130129691 -13656764 + MLT1A1 LTR MaLR 1 361 -4 23 33 0 0 chr12 130130729 130130759 -13655696 + AT_rich Low_complexity Low_complexity 1 30 0 2137 125 3 0 chr12 130130834 130131131 -13655324 - AluSp SINE Alu -15 298 1 234 0 0 0 chr12 130131212 130131238 -13655217 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 549 114 76 0 chr12 130131238 130131317 -13655138 - AluSg/x SINE Alu -33 276 192 1623 161 58 10 chr12 130131318 130131609 -13654846 - AluJb SINE Alu -7 305 1 2152 138 110 53 chr12 130131609 130131871 -13654584 - L1MB7 LINE L1 -65 6119 5873 2230 111 3 0 chr12 130131871 130132177 -13654278 - AluSg SINE Alu -3 307 1 2152 138 110 53 chr12 130132177 130132458 -13653997 - L1MB7 LINE L1 -311 5873 5545 6180 35 8 3 chr12 130132655 130133433 -13653022 - L1PA3 LINE L1 -1 6154 5373 240 287 56 0 chr12 130133551 130133659 -13652796 - MLT1K LTR MaLR -18 570 457 1181 118 6 0 chr12 130134121 130134290 -13652165 - AluSg/x SINE Alu -8 302 133 228 268 56 0 chr12 130134392 130134463 -13651992 - MLT1J LTR MaLR -436 75 1 316 181 291 0 chr12 130134715 130134842 -13651613 - MER104 DNA Tc2 -1 179 16 272 159 0 0 chr12 130135072 130135124 -13651331 - MLT1H LTR MaLR -2 547 496 1214 245 25 67 chr12 130135134 130135579 -13650876 - L1MD2 LINE L1 -10 6349 5924 653 261 144 96 chr12 130135579 130136058 -13650397 - MLT1H LTR MaLR -73 522 21 252 0 0 0 chr12 130138366 130138394 -13648061 + (CA)n Simple_repeat Simple_repeat 2 29 0 845 150 0 8 chr12 130138440 130138614 -13647841 - FLAM_C SINE Alu 0 174 2 195 364 19 39 chr12 130138908 130139062 -13647393 + L2 LINE L2 2906 3056 -257 2288 76 24 3 chr12 130139484 130139773 -13646682 - AluSp SINE Alu -18 295 1 369 214 0 45 chr12 130139988 130140077 -13646378 + MIR SINE MIR 164 248 -14 2284 177 62 30 chr12 130140797 130141073 -13645382 - MLT2B1 LTR ERVL 0 520 219 180 0 0 0 chr12 130141073 130141093 -13645362 + (GA)n Simple_repeat Simple_repeat 1 20 0 2284 177 62 30 chr12 130141093 130141320 -13645135 - MLT2B1 LTR ERVL -301 219 1 182 267 0 0 chr12 130141444 130141489 -13644966 - MIR SINE MIR -84 178 134 252 0 0 0 chr12 130141556 130141584 -13644871 + (TC)n Simple_repeat Simple_repeat 1 28 0 472 300 86 32 chr12 130141584 130141804 -13644651 + L2 LINE L2 2366 2597 -717 2043 147 3 0 chr12 130141876 130142175 -13644280 - AluSq SINE Alu -13 300 1 1729 198 114 28 chr12 130142177 130142267 -13644188 - L1M4 LINE L1 -891 5255 5174 2157 140 0 0 chr12 130142267 130142574 -13643881 - AluSx SINE Alu -5 307 1 1729 198 114 28 chr12 130142574 130142826 -13643629 - L1M4 LINE L1 -972 5174 4945 1800 142 3 26 chr12 130142826 130143129 -13643326 + AluJo SINE Alu 3 298 -14 1729 198 114 28 chr12 130143129 130143390 -13643065 - L1M4 LINE L1 -1201 4945 4599 1479 204 45 18 chr12 130143385 130143802 -13642653 - L1M4 LINE L1 -2974 3172 2744 * 2293 98 3 0 chr12 130143802 130144097 -13642358 + AluSx SINE Alu 1 296 -16 1479 204 45 18 chr12 130144097 130144145 -13642310 - L1M4 LINE L1 -3402 2744 2699 606 271 32 61 chr12 130144244 130144491 -13641964 + MIR SINE MIR 3 242 -20 487 66 26 0 chr12 130144497 130144573 -13641882 + (TTA)n Simple_repeat Simple_repeat 3 80 0 2337 89 10 0 chr12 130145572 130145875 -13640580 - AluSp SINE Alu -7 306 1 241 372 63 26 chr12 130145976 130146167 -13640288 + L2 LINE L2 2511 2708 -606 1765 164 13 27 chr12 130147080 130147379 -13639076 + AluJb SINE Alu 1 295 -17 2468 68 0 0 chr12 130147744 130148038 -13638417 + AluY SINE Alu 1 294 -17 267 219 41 27 chr12 130148092 130148165 -13638290 + MIR SINE MIR 97 170 -92 647 240 150 43 chr12 130148216 130148562 -13637893 - L2 LINE L2 -1079 2235 1853 2496 168 13 36 chr12 130149628 130150181 -13636274 - L1MB4 LINE L1 -4 6176 5637 844 165 8 0 chr12 130150972 130151105 -13635350 - AluJo SINE Alu -178 134 1 21 36 0 0 chr12 130151150 130151178 -13635277 + AT_rich Low_complexity Low_complexity 1 28 0 2550 58 0 7 chr12 130151300 130151610 -13634845 + AluY SINE Alu 1 308 -3 5433 173 86 34 chr12 130151839 130153222 -13633233 + Charlie1a DNA MER1_type 1 1455 0 1819 143 14 31 chr12 130154616 130154909 -13631546 - AluJo SINE Alu -24 288 1 1285 173 5 5 chr12 130155188 130155408 -13631047 + AluJo SINE Alu 85 304 -8 2035 118 0 11 chr12 130155887 130156174 -13630281 + AluSx SINE Alu 1 308 0 217 0 0 0 chr12 130156174 130156198 -13630257 + (TAAAA)n Simple_repeat Simple_repeat 2 130 0 22 0 0 0 chr12 130156537 130156559 -13629896 + AT_rich Low_complexity Low_complexity 1 22 0 1243 285 70 36 chr12 130156566 130156915 -13629540 + L1MC4a LINE L1 5415 5750 -2058 216 0 0 0 chr12 130156915 130156939 -13629516 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1243 285 70 36 chr12 130156939 130157284 -13629171 + L1MC4a LINE L1 5750 6133 -1675 356 235 104 82 chr12 130157760 130157894 -13628561 - L1MC5 LINE L1 -72 7889 7748 1282 195 89 31 chr12 130157894 130158243 -13628212 - MER93b LTR ERV1 0 373 5 356 235 104 82 chr12 130158243 130158291 -13628164 - L1MC5 LINE L1 -213 7748 7703 2283 76 3 20 chr12 130158295 130158598 -13627857 + AluSq SINE Alu 2 299 -14 247 231 167 65 chr12 130158698 130158997 -13627458 + L2 LINE L2 1617 1993 -1321 581 208 191 0 chr12 130159013 130159181 -13627274 - MIR SINE MIR -17 245 46 381 290 122 41 chr12 130159201 130159422 -13627033 + L2 LINE L2 2019 2257 -1057 2264 106 10 0 chr12 130159485 130159777 -13626678 + AluSx SINE Alu 1 295 -17 352 232 53 32 chr12 130160113 130160208 -13626247 + L2 LINE L2 3171 3267 -5 334 278 134 46 chr12 130160393 130160609 -13625846 - L2 LINE L2 -818 2496 2262 1926 145 3 33 chr12 130161635 130161939 -13624516 + AluJo SINE Alu 1 295 -17 333 165 38 63 chr12 130162035 130162114 -13624341 + MER116 DNA Mariner 3 79 -1 2375 92 0 0 chr12 130162549 130162853 -13623602 - AluY SINE Alu -7 304 1 272 300 64 0 chr12 130163324 130163434 -13623021 - L1ME LINE L1 -458 5663 5547 297 264 61 143 chr12 130163475 130163541 -13622914 - MIR3 SINE MIR -10 198 128 1572 167 83 0 chr12 130163541 130163829 -13622626 + AluJb SINE Alu 1 312 0 297 264 61 143 chr12 130163829 130163961 -13622494 - MIR3 SINE MIR -80 128 20 497 207 107 7 chr12 130164023 130164163 -13622292 - L1M4 LINE L1 -2498 3648 3495 2416 84 6 0 chr12 130164212 130164523 -13621932 - AluSp SINE Alu 0 313 1 452 107 0 0 chr12 130164555 130164630 -13621825 - L1MB4 LINE L1 0 6180 6106 1264 187 10 76 chr12 130164653 130165043 -13621412 - L1M4 LINE L1 -700 5484 5068 2302 88 13 3 chr12 130165043 130165350 -13621105 - AluY SINE Alu -1 310 1 1264 187 10 76 chr12 130165350 130165551 -13620904 - L1M4 LINE L1 -1116 5068 4855 899 169 6 19 chr12 130165559 130165719 -13620736 + FRAM SINE Alu 5 162 -14 2570 182 96 59 chr12 130165751 130166665 -13619790 - L1M4 LINE L1 -1344 4802 3855 * 4008 172 52 20 chr12 130166663 130167552 -13618903 - L1MB8 LINE L1 -2 6176 5260 234 178 0 0 chr12 130167632 130167677 -13618778 - L1MB8 LINE L1 -3742 2404 2360 41 21 0 0 chr12 130168336 130168384 -13618071 + AT_rich Low_complexity Low_complexity 1 48 0 210 135 0 27 chr12 130168913 130168950 -13617505 + L2 LINE L2 3274 3309 -4 2181 113 3 3 chr12 130169182 130169483 -13616972 + AluSx SINE Alu 1 301 -11 240 261 0 0 chr12 130169483 130169571 -13616884 - L1MC4 LINE L1 -1340 6702 6615 2891 151 34 24 chr12 130170353 130170937 -13615518 - LTR49 LTR ERV1 -5 590 1 286 280 65 0 chr12 130170985 130171078 -13615377 + MIR SINE MIR 163 261 -1 2150 147 0 0 chr12 130171386 130171698 -13614757 - AluSx SINE Alu 0 312 1 2195 128 11 22 chr12 130172487 130172854 -13613601 + MER47A DNA MER2_type 4 366 0 4220 224 72 99 chr12 130174337 130174718 -13611737 + L1MEc LINE L1 37 427 -5788 2097 98 11 0 chr12 130174718 130175025 -13611430 - AluSg SINE Alu 0 314 5 4220 224 72 99 chr12 130175025 130175529 -13610926 + L1MEc LINE L1 427 943 -5272 2195 118 7 0 chr12 130175529 130175825 -13610630 - AluSx SINE Alu -14 298 1 4220 224 72 99 chr12 130175825 130176673 -13609782 + L1MEc LINE L1 943 1813 -4402 631 182 0 36 chr12 130176673 130176783 -13609672 + FLAM_A SINE Alu 1 106 -36 4220 224 72 99 chr12 130176783 130177225 -13609230 + L1MEc LINE L1 1813 2266 -3949 2300 113 0 0 chr12 130177225 130177527 -13608928 + AluSg SINE Alu 3 304 -6 4220 224 72 99 chr12 130177527 130178135 -13608320 + L1MEc LINE L1 2266 2838 -3377 532 167 46 9 chr12 130178165 130178273 -13608182 - MLT1B LTR MaLR -16 374 263 1541 166 49 39 chr12 130178273 130178424 -13608031 - L1M4 LINE L1 -598 5576 5428 1478 150 105 15 chr12 130178424 130178691 -13607764 - AluJb SINE Alu -21 291 1 1541 166 49 39 chr12 130178691 130179072 -13607383 - L1M4 LINE L1 -746 5428 5026 400 200 104 9 chr12 130179072 130179187 -13607268 - MER3 DNA MER1_type -73 136 11 2342 84 7 0 chr12 130179199 130179495 -13606960 - AluSc SINE Alu -7 302 5 485 254 207 21 chr12 130179649 130179929 -13606526 + L2 LINE L2 2971 3302 -11 433 258 88 6 chr12 130179948 130180107 -13606348 + L1ME LINE L1 5502 5673 -448 304 149 40 0 chr12 130180558 130180632 -13605823 + L1MB8 LINE L1 6101 6177 -1 2176 107 10 0 chr12 130180800 130181091 -13605364 + AluSp SINE Alu 3 296 -17 2295 129 0 0 chr12 130182066 130182375 -13604080 - AluSx SINE Alu -3 309 1 2168 114 7 0 chr12 130182447 130182746 -13603709 - AluSx SINE Alu -11 301 1 1479 232 66 78 chr12 130183640 130184321 -13602134 + L1ME3A LINE L1 5394 6066 -104 1319 150 18 44 chr12 130186004 130186230 -13600225 - AluJo SINE Alu -92 220 1 370 235 174 13 chr12 130186415 130186564 -13599891 - MER5B DNA MER1_type -1 177 5 27 29 0 0 chr12 130186642 130186676 -13599779 + AT_rich Low_complexity Low_complexity 1 34 0 788 134 0 8 chr12 130186678 130186797 -13599658 - FLAM_C SINE Alu -15 118 1 203 200 20 40 chr12 130187096 130187146 -13599309 - L2 LINE L2 -5 3267 3219 233 250 0 18 chr12 130187248 130187304 -13599151 + MIR SINE MIR 191 245 -17 1920 135 87 22 chr12 130189320 130189735 -13596720 - L1MB8 LINE L1 -75 6103 5662 1805 149 30 0 chr12 130189755 130190023 -13596432 + AluJo SINE Alu 7 282 -30 2175 79 35 48 chr12 130190042 130190357 -13596098 + AluY SINE Alu 1 311 0 277 271 0 0 chr12 130190619 130190689 -13595766 - L1MB8 LINE L1 -531 5590 5521 563 268 7 7 chr12 130190726 130190879 -13595576 - MIR SINE MIR 0 262 110 1889 105 10 80 chr12 130190993 130191307 -13595148 - AluSq SINE Alu -21 292 1 823 101 54 23 chr12 130191310 130191439 -13595016 - AluJo/FLAM SINE Alu -169 133 1 668 212 110 0 chr12 130191448 130191594 -13594861 - FRAM SINE Alu -13 163 2 2020 103 3 85 chr12 130191598 130191929 -13594526 - AluSx SINE Alu -8 304 1 33 56 0 0 chr12 130192211 130192265 -13594190 + AT_rich Low_complexity Low_complexity 1 54 0 1969 153 3 3 chr12 130192575 130192870 -13593585 - AluSx SINE Alu -17 295 1 2415 90 3 0 chr12 130192905 130193215 -13593240 - AluSp SINE Alu -2 311 1 331 256 31 20 chr12 130193304 130193422 -13593033 - MIR3 SINE MIR -50 158 79 588 261 20 7 chr12 130193469 130193622 -13592833 + MIR SINE MIR 22 176 -86 2103 125 3 7 chr12 130193667 130193971 -13592484 - AluSx SINE Alu -9 303 1 502 292 58 6 chr12 130194027 130194198 -13592257 + MIR SINE MIR 2 181 -81 334 286 41 10 chr12 130194937 130195035 -13591420 + MIR SINE MIR 81 181 -81 1738 142 13 33 chr12 130195054 130195356 -13591099 + AluSq SINE Alu 1 296 -17 2291 126 0 0 chr12 130196331 130196640 -13589815 - AluSx SINE Alu -3 309 1 2168 114 7 0 chr12 130196712 130197011 -13589444 - AluSx SINE Alu -11 301 1 1479 232 66 78 chr12 130197905 130198586 -13587869 + L1ME3A LINE L1 5394 6066 -104 1319 150 18 44 chr12 130200267 130200493 -13585962 - AluJo SINE Alu -92 220 1 370 235 174 13 chr12 130200678 130200827 -13585628 - MER5B DNA MER1_type -1 177 5 27 29 0 0 chr12 130200905 130200939 -13585516 + AT_rich Low_complexity Low_complexity 1 34 0 788 134 0 8 chr12 130200941 130201060 -13585395 - FLAM_C SINE Alu -15 118 1 203 200 20 40 chr12 130201359 130201409 -13585046 - L2 LINE L2 -5 3267 3219 233 250 0 18 chr12 130201511 130201567 -13584888 + MIR SINE MIR 191 245 -17 1920 135 87 22 chr12 130203583 130203998 -13582457 - L1MB8 LINE L1 -75 6103 5662 1805 149 30 0 chr12 130204018 130204286 -13582169 + AluJo SINE Alu 7 282 -30 2035 98 35 48 chr12 130204305 130204620 -13581835 + AluY SINE Alu 1 311 0 277 271 0 0 chr12 130204888 130204958 -13581497 - L1MB8 LINE L1 -531 5590 5521 563 268 7 7 chr12 130204995 130205148 -13581307 - MIR SINE MIR 0 262 110 294 113 0 0 chr12 130205261 130205314 -13581141 - AluSp/q SINE Alu -12 291 239 701 77 103 8 chr12 130255337 130255454 -13531001 + L1PA13 LINE L1 6033 6160 -3 315 260 168 17 chr12 130255722 130255913 -13530542 + MIR SINE MIR 34 262 0 411 285 36 29 chr12 130255927 130256064 -13530391 + MER5A DNA MER1_type 1 138 -51 2321 104 0 7 chr12 130257005 130257312 -13529143 + AluSq SINE Alu 1 305 -8 1283 123 0 0 chr12 130257327 130257514 -13528941 + AluSg/x SINE Alu 118 304 -8 301 124 19 31 chr12 130257515 130257580 -13528875 + FLAM SINE Alu 73 131 -2 238 206 33 11 chr12 130257610 130257702 -13528753 + (TTAAA)n Simple_repeat Simple_repeat 1 94 0 338 140 0 0 chr12 130257707 130257757 -13528698 + Alu SINE Alu 239 288 -13 2229 86 7 10 chr12 130257821 130258113 -13528342 + AluSx SINE Alu 1 291 -21 41 36 0 0 chr12 130258113 130258168 -13528287 + AT_rich Low_complexity Low_complexity 1 55 0 452 263 11 37 chr12 130258373 130258563 -13527892 - L1M4 LINE L1 -1077 5069 4885 257 388 35 9 chr12 130258650 130258766 -13527689 + L2 LINE L2 3107 3225 -47 204 40 0 0 chr12 130259581 130259606 -13526849 + (T)n Simple_repeat Simple_repeat 1 25 0 1627 77 39 0 chr12 130259613 130259821 -13526634 - AluY SINE Alu -95 216 1 2598 50 10 0 chr12 130260134 130260437 -13526018 - AluY SINE Alu -4 307 2 2135 124 7 0 chr12 130260602 130260893 -13525562 + AluSx SINE Alu 1 293 -19 2295 92 0 26 chr12 130260895 130261200 -13525255 + AluSp SINE Alu 1 297 -16 2221 119 0 0 chr12 130261209 130261502 -13524953 + AluSx SINE Alu 1 293 -19 1068 103 0 0 chr12 130262350 130262486 -13523969 + AluSq/x SINE Alu 1 136 -177 2203 109 3 7 chr12 130262486 130262790 -13523665 + AluY SINE Alu 1 303 -8 2328 82 16 20 chr12 130262988 130263292 -13523163 + AluY SINE Alu 1 303 -8 2312 104 0 19 chr12 130263303 130263610 -13522845 + AluSg SINE Alu 1 301 -9 2246 104 0 17 chr12 130264239 130264536 -13521919 - AluSx SINE Alu -20 292 1 614 67 0 0 chr12 130264547 130264622 -13521833 - Alu SINE Alu -12 298 224 891 163 208 0 chr12 130264631 130264833 -13521622 + MSTA LTR MaLR 185 428 0 837 224 30 6 chr12 130264854 130265019 -13521436 + FAM SINE Alu 1 169 -6 2203 117 3 13 chr12 130265050 130265358 -13521097 + AluSq SINE Alu 1 305 -8 1806 193 0 0 chr12 130265367 130265667 -13520788 + AluJb SINE Alu 5 304 -8 2529 70 3 6 chr12 130265753 130266065 -13520390 + AluY SINE Alu 1 311 0 353 288 188 12 chr12 130266096 130266256 -13520199 + L2 LINE L2 138 325 -2989 376 212 227 0 chr12 130266274 130266406 -13520049 + L2 LINE L2 635 796 -2518 426 198 71 24 chr12 130266412 130266538 -13519917 + MER3 DNA MER1_type 39 123 -86 232 228 184 18 chr12 130266505 130266619 -13519836 + MER3 DNA MER1_type 2448 2580 0 * 2926 246 241 44 chr12 130266637 130266829 -13519626 + L2 LINE L2 819 972 -2341 2051 138 0 0 chr12 130266829 130267146 -13519309 - AluSx SINE Alu 0 317 1 2926 246 241 44 chr12 130267146 130267679 -13518776 + L2 LINE L2 972 1399 -1914 2402 56 3 40 chr12 130267679 130268001 -13518454 + AluY SINE Alu 1 310 -1 2926 246 241 44 chr12 130268001 130269055 -13517400 + L2 LINE L2 1399 2244 -1069 1611 161 58 15 chr12 130269055 130269329 -13517126 + AluJo SINE Alu 1 286 -26 2926 246 241 44 chr12 130269329 130269494 -13516961 + L2 LINE L2 2244 3127 -186 478 236 75 25 chr12 130269512 130269711 -13516744 - L1MC/D LINE L1 -2015 5793 5585 2221 93 14 3 chr12 130270810 130271099 -13515356 + AluSq SINE Alu 1 292 -21 2433 64 0 39 chr12 130271157 130271469 -13514986 + AluY SINE Alu 1 300 -11 254 271 179 21 chr12 130271540 130271831 -13514624 - L1ME4a LINE L1 -98 6023 5687 1777 178 7 0 chr12 130271981 130272273 -13514182 - AluJb SINE Alu -18 294 1 753 180 23 0 chr12 130272279 130272407 -13514048 - FLAM_C SINE Alu 0 133 3 2145 125 17 0 chr12 130272407 130272703 -13513752 - AluSx SINE Alu -10 302 2 1283 144 32 86 chr12 130272712 130272833 -13513622 - AluJo SINE Alu -49 263 137 1817 155 10 17 chr12 130272833 130273130 -13513325 - AluJo SINE Alu -17 295 1 1283 144 32 86 chr12 130273130 130273286 -13513169 - AluJo SINE Alu -175 137 1 347 276 0 20 chr12 130273303 130273401 -13513054 - MER5B DNA MER1_type 0 178 83 2218 118 10 0 chr12 130273800 130274097 -13512358 + AluSx SINE Alu 1 300 -12 1711 185 24 0 chr12 130274197 130274484 -13511971 + AluJo SINE Alu 2 295 -17 2473 86 0 0 chr12 130274484 130274788 -13511667 + AluY SINE Alu 1 304 -7 615 184 0 0 chr12 130274813 130274916 -13511539 + FRAM SINE Alu 56 158 -18 2481 80 0 0 chr12 130274916 130275218 -13511237 + AluY SINE Alu 1 302 -9 2414 90 0 7 chr12 130275493 130275803 -13510652 + AluSp SINE Alu 1 308 -5 348 236 3 53 chr12 130276271 130276384 -13510071 + MER5B DNA MER1_type 3 107 -82 923 122 23 8 chr12 130276386 130276517 -13509938 + AluJb SINE Alu 1 133 -179 249 258 0 86 chr12 130276524 130276571 -13509884 + MER5B DNA MER1_type 94 131 -47 1570 130 17 0 chr12 130276571 130276802 -13509653 + AluSg SINE Alu 61 295 -15 249 258 0 86 chr12 130276802 130276847 -13509608 + MER5B DNA MER1_type 131 178 0 389 306 27 41 chr12 130277398 130277545 -13508910 + MIR SINE MIR 90 234 -28 2083 78 0 4 chr12 130279041 130279298 -13507157 - AluSx SINE Alu -56 256 1 1396 135 111 32 chr12 130279318 130279570 -13506885 - AluJo SINE Alu -18 294 23 1611 178 13 23 chr12 130280200 130280503 -13505952 - AluJo SINE Alu -12 300 1 236 288 15 0 chr12 130280802 130280868 -13505587 + MIR SINE MIR 195 261 -1 23 54 0 0 chr12 130281021 130281058 -13505397 + AT_rich Low_complexity Low_complexity 1 37 0 423 281 131 25 chr12 130281317 130281516 -13504939 + MIR SINE MIR 3 222 -40 284 269 7 28 chr12 130281791 130281932 -13504523 + (CGG)n Simple_repeat Simple_repeat 1 138 0 22 0 0 0 chr12 130282126 130282148 -13504307 + GC_rich Low_complexity Low_complexity 1 22 0 193 29 59 0 chr12 130282378 130282412 -13504043 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2547 44 7 0 chr12 130282620 130282916 -13503539 - AluY SINE Alu -13 298 1 1079 150 0 90 chr12 130283141 130283374 -13503081 + AluJo SINE Alu 9 220 -92 371 138 0 0 chr12 130283374 130283432 -13503023 + AluSg/x SINE Alu 84 141 -159 841 184 0 87 chr12 130283479 130283686 -13502769 + AluJo SINE Alu 121 309 -3 834 169 149 6 chr12 130283686 130283920 -13502535 - LTR54 LTR ERV1 -181 329 1 713 177 0 0 chr12 130283971 130284084 -13502371 + FLAM_A SINE Alu 16 128 -14 209 313 30 0 chr12 130284084 130284151 -13502304 - MIR SINE MIR -123 139 71 2293 107 0 7 chr12 130284225 130284533 -13501922 + AluSg SINE Alu 1 306 -4 2280 89 0 7 chr12 130284604 130284896 -13501559 + AluSg SINE Alu 21 310 0 640 174 91 0 chr12 130284908 130285029 -13501426 + AluSq/x SINE Alu 2 133 -180 1791 187 14 0 chr12 130285188 130285477 -13500978 + AluJb SINE Alu 1 293 -19 451 53 0 0 chr12 130285499 130285556 -13500899 + AluSg/x SINE Alu 80 136 -173 1990 126 50 0 chr12 130285556 130285833 -13500622 + AluSx SINE Alu 2 292 -20 2065 124 3 0 chr12 130286023 130286341 -13500114 - AluSx SINE Alu 0 319 1 324 307 78 18 chr12 130286949 130287115 -13499340 + MER5A DNA MER1_type 4 179 -10 2361 58 31 7 chr12 130287822 130288113 -13498342 - AluSq SINE Alu -15 298 1 628 239 101 55 chr12 130288141 130288379 -13498076 - MIR SINE MIR -2 260 12 1465 107 0 0 chr12 130288393 130288619 -13497836 - AluSq SINE Alu 0 313 104 2503 57 3 22 chr12 130288622 130288939 -13497516 - AluY SINE Alu 0 311 1 4549 168 108 25 chr12 130289065 130289260 -13497195 - Tigger6a DNA MER2_type -514 1083 905 2055 123 23 23 chr12 130289260 130289569 -13496886 + AluSx SINE Alu 1 309 -3 4549 168 108 25 chr12 130289569 130289626 -13496829 - Tigger6a DNA MER2_type -692 905 854 2692 51 0 3 chr12 130289626 130289938 -13496517 + AluY SINE Alu 1 311 0 4549 168 108 25 chr12 130289938 130290679 -13495776 - Tigger6a DNA MER2_type -743 854 7 2288 82 0 3 chr12 130290679 130291005 -13495450 - AluY SINE Alu 0 325 1 965 201 12 0 chr12 130291005 130291174 -13495281 - FAM SINE Alu 0 175 5 2281 97 3 0 chr12 130291251 130291540 -13494915 + AluSg SINE Alu 1 290 -20 2089 108 34 10 chr12 130291542 130291839 -13494616 + AluY SINE Alu 3 306 -5 2652 37 0 0 chr12 130292088 130292382 -13494073 + AluY SINE Alu 1 294 -17 1947 164 0 0 chr12 130292623 130292916 -13493539 - AluSx SINE Alu -15 297 5 2545 44 3 0 chr12 130293298 130293591 -13492864 - AluY SINE Alu -17 294 1 2010 117 3 7 chr12 130294638 130294920 -13491535 - AluSx SINE Alu -18 294 14 2181 108 3 13 chr12 130294946 130295252 -13491203 - AluSg1 SINE Alu -6 303 1 2085 135 0 3 chr12 130295285 130295582 -13490873 + AluSx SINE Alu 6 301 -11 1986 102 41 60 chr12 130295889 130296023 -13490432 + AluSx SINE Alu 1 136 -176 2302 107 0 3 chr12 130296023 130296332 -13490123 + AluSc SINE Alu 1 308 -1 1986 102 41 60 chr12 130296332 130296511 -13489944 + AluSx SINE Alu 136 308 -4 622 260 68 121 chr12 130296684 130296755 -13489700 + L1ME4a LINE L1 5559 5632 -489 2225 117 10 0 chr12 130296755 130297054 -13489401 - AluSp SINE Alu -10 303 2 622 260 68 121 chr12 130297054 130297071 -13489384 + L1ME4a LINE L1 5632 5648 -473 2038 145 0 3 chr12 130297071 130297367 -13489088 - AluSx SINE Alu -17 295 1 622 260 68 121 chr12 130297367 130297692 -13488763 + L1ME4a LINE L1 5648 5951 -170 355 118 0 0 chr12 130297701 130297752 -13488703 + U6 snRNA snRNA 1 51 -56 2201 107 13 10 chr12 130297782 130298091 -13488364 + AluSg SINE Alu 1 310 0 326 310 116 30 chr12 130298097 130298195 -13488260 + HAL1 LINE L1 1913 2001 -506 1670 153 23 36 chr12 130298195 130298503 -13487952 - AluJb SINE Alu -8 304 1 326 310 116 30 chr12 130298503 130298533 -13487922 + HAL1 LINE L1 2001 2027 -480 2284 116 3 3 chr12 130298533 130298843 -13487612 + AluSq SINE Alu 1 310 -3 326 310 116 30 chr12 130298843 130298945 -13487510 + HAL1 LINE L1 2027 2164 -343 2404 59 0 36 chr12 130298947 130299250 -13487205 - AluY SINE Alu -19 292 1 2003 113 3 18 chr12 130299254 130299560 -13486895 - AluSq SINE Alu 0 313 14 409 197 0 0 chr12 130299631 130299702 -13486753 + AluJ/FRAM SINE Alu 228 298 -14 213 300 24 0 chr12 130300294 130300387 -13486068 - MIR SINE MIR -83 125 30 894 198 0 18 chr12 130300559 130300726 -13485729 + FRAM SINE Alu 12 175 -1 294 316 106 33 chr12 130300727 130301002 -13485453 + LTR16A LTR ERVL 56 350 -100 2003 146 7 0 chr12 130301251 130301539 -13484916 + AluJo SINE Alu 7 296 -16 1921 99 37 4 chr12 130301542 130301814 -13484641 + AluSp SINE Alu 1 281 -32 345 24 0 0 chr12 130301839 130301881 -13484574 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2015 123 3 7 chr12 130301883 130302167 -13484288 - AluSx SINE Alu -29 283 1 22 0 0 0 chr12 130302772 130302794 -13483661 + AT_rich Low_complexity Low_complexity 1 22 0 2091 114 57 0 chr12 130302804 130303085 -13483370 + AluSx SINE Alu 1 297 -15 2494 57 3 0 chr12 130303106 130303402 -13483053 - AluY SINE Alu -14 297 1 697 187 0 8 chr12 130303519 130303642 -13482813 - AluSq/x SINE Alu -190 122 1 1273 122 11 5 chr12 130303642 130303830 -13482625 + AluSg/x SINE Alu 102 290 -22 2239 76 52 3 chr12 130303838 130304150 -13482305 + AluSp SINE Alu 1 326 0 514 273 24 69 chr12 130304214 130304448 -13482007 - L2 LINE L2 -197 3075 2858 260 263 171 0 chr12 130304990 130305066 -13481389 - L2 LINE L2 -22 3291 3203 2501 60 7 0 chr12 130305414 130305714 -13480741 - AluY SINE Alu -9 302 1 1464 196 148 74 chr12 130305900 130306467 -13479988 - MER21B LTR ERV1 -109 754 146 872 180 6 12 chr12 130306495 130306667 -13479788 - FRAM SINE Alu -5 171 1 268 200 59 47 chr12 130306668 130306753 -13479702 + MER34 LTR ERV1 452 537 -5 762 181 0 88 chr12 130306796 130306956 -13479499 + FAM SINE Alu 4 149 -36 2425 78 0 0 chr12 130306981 130307276 -13479179 - AluY SINE Alu -16 295 1 676 219 16 44 chr12 130307292 130307475 -13478980 + L1ME4a LINE L1 4648 4825 -1321 1145 108 11 17 chr12 130307487 130307663 -13478792 + AluJo SINE Alu 37 211 -101 256 167 0 0 chr12 130307663 130307711 -13478744 + FAM SINE Alu 125 172 -7 2197 132 0 0 chr12 130307711 130308006 -13478449 + AluSg SINE Alu 1 295 -15 3146 225 127 25 chr12 130308032 130309040 -13477415 - L2 LINE L2 -775 2539 1429 267 255 11 53 chr12 130309290 130309384 -13477071 + L1ME4a LINE L1 5691 5780 -341 2139 101 20 20 chr12 130309391 130309689 -13476766 - AluSx SINE Alu -14 298 1 842 218 11 17 chr12 130309696 130309870 -13476585 + AluJo SINE Alu 116 288 -24 428 263 173 37 chr12 130309871 130309901 -13476554 + L1ME4a LINE L1 5845 5870 -251 2300 83 0 0 chr12 130309901 130310179 -13476276 - AluSg1 SINE Alu -7 302 25 428 263 173 37 chr12 130310179 130310207 -13476248 + L1ME4a LINE L1 5870 5893 -228 1855 173 3 3 chr12 130310207 130310507 -13475948 + AluJo SINE Alu 1 300 -12 428 263 173 37 chr12 130310507 130310690 -13475765 + L1ME4a LINE L1 5893 6120 -1 1828 153 10 20 chr12 130311113 130311413 -13475042 - AluJo SINE Alu -13 299 3 2505 64 3 0 chr12 130311617 130311915 -13474540 - AluY SINE Alu -12 299 1 1832 77 0 32 chr12 130311920 130312166 -13474289 - AluY SINE Alu 0 311 74 500 228 18 41 chr12 130312169 130312340 -13474115 - LTR4 LTR ERV1 -40 556 390 648 309 56 72 chr12 130312797 130313268 -13473187 + L2 LINE L2 2792 3270 -2 2203 108 7 3 chr12 130313269 130313574 -13472881 + AluSp SINE Alu 2 307 -6 292 253 53 0 chr12 130313692 130313767 -13472688 + L2 LINE L2 3192 3270 -2 1935 186 90 39 chr12 130313775 130314286 -13472169 + L2 LINE L2 2160 2696 -618 752 249 82 44 chr12 130314284 130314384 -13472071 + L2 LINE L2 3009 3104 -209 * 2249 94 3 13 chr12 130314384 130314682 -13471773 - AluSx SINE Alu -17 295 1 752 249 82 44 chr12 130314682 130314874 -13471581 + L2 LINE L2 3104 3312 -1 1199 167 9 53 chr12 130315257 130315484 -13470971 + MER20 DNA MER1_type 3 219 0 857 286 40 8 chr12 130315511 130315759 -13470696 - MIR SINE MIR -5 257 2 768 278 86 0 chr12 130316627 130316836 -13469619 + MIR SINE MIR 28 254 -8 232 242 77 126 chr12 130316843 130316949 -13469506 - MIR SINE MIR -27 235 140 2013 99 4 0 chr12 130316949 130317212 -13469243 + AluSx SINE Alu 48 311 -1 232 242 77 126 chr12 130317212 130317287 -13469168 - MIR SINE MIR -122 140 63 433 164 6 73 chr12 130317756 130317869 -13468586 - MER113 DNA MER1_type? -290 231 133 1914 108 97 0 chr12 130317869 130318147 -13468308 + AluSx SINE Alu 1 305 -7 433 164 6 73 chr12 130318147 130318210 -13468245 - MER113 DNA MER1_type? -388 133 67 2459 66 6 25 chr12 130318215 130318532 -13467923 - AluY SINE Alu 0 311 1 25 31 0 0 chr12 130318581 130318613 -13467842 + AT_rich Low_complexity Low_complexity 1 32 0 2171 89 52 0 chr12 130318895 130319186 -13467269 - AluSp SINE Alu -7 306 1 857 165 0 0 chr12 130319233 130319366 -13467089 - FLAM_C SINE Alu 0 133 1 283 267 249 34 chr12 130319564 130319749 -13466706 - MIR SINE MIR -10 252 34 253 115 96 19 chr12 130320119 130320171 -13466284 - MER45 DNA AcHobo 0 1581 1526 23 0 0 0 chr12 130321348 130321371 -13465084 + AT_rich Low_complexity Low_complexity 1 23 0 2260 108 3 0 chr12 130324098 130324385 -13462070 - AluSq SINE Alu -24 289 2 1640 167 78 11 chr12 130324514 130324796 -13461659 - AluJo SINE Alu -9 303 3 2446 63 13 7 chr12 130324807 130325109 -13461346 - AluY SINE Alu -7 304 1 1866 175 3 0 chr12 130325726 130326012 -13460443 - AluJb SINE Alu -25 287 1 1444 171 68 29 chr12 130326079 130326201 -13460254 + AluJo SINE Alu 1 117 -195 2187 134 0 3 chr12 130326201 130326514 -13459941 + AluSx SINE Alu 1 312 0 1444 171 68 29 chr12 130326514 130326671 -13459784 + AluJo SINE Alu 117 291 -21 2474 40 40 16 chr12 130326735 130327039 -13459416 + AluYa5 SINE Alu 1 311 0 2245 113 7 3 chr12 130327250 130327552 -13458903 - AluSg SINE Alu -7 303 1 1532 123 0 9 chr12 130327618 130327838 -13458617 + AluSg/x SINE Alu 90 307 -3 537 219 69 93 chr12 130328762 130329009 -13457446 - MER102a DNA MER1_type -2 328 88 977 107 15 0 chr12 130329013 130329144 -13457311 - FLAM_C SINE Alu 0 133 1 452 153 71 0 chr12 130329170 130329255 -13457200 - HY4 scRNA scRNA 0 93 3 370 297 52 19 chr12 130329810 130329965 -13456490 + L1MC/D LINE L1 5542 5701 -2107 1208 135 6 0 chr12 130329971 130330149 -13456306 - AluSg/x SINE Alu 0 312 134 2338 106 3 0 chr12 130330149 130330451 -13456004 - AluSp SINE Alu -10 303 1 2128 141 3 0 chr12 130330453 130330750 -13455705 - AluSq SINE Alu -15 298 1 1179 168 168 76 chr12 130330762 130330965 -13455490 + LTR54 LTR ERV1 3 186 -324 2163 125 3 0 chr12 130330965 130331261 -13455194 - AluSx SINE Alu -15 297 1 1179 168 168 76 chr12 130331261 130331415 -13455040 + LTR54 LTR ERV1 186 402 -108 2332 88 7 0 chr12 130331415 130331711 -13454744 - AluSx SINE Alu 0 312 15 1179 168 168 76 chr12 130331711 130331746 -13454709 + LTR54 LTR ERV1 402 432 -78 2201 98 10 3 chr12 130331874 130332171 -13454284 - AluSx SINE Alu -13 299 1 323 140 0 0 chr12 130332235 130332285 -13454170 - Alu SINE Alu -13 288 239 238 206 33 11 chr12 130332290 130332382 -13454073 + (TTTAA)n Simple_repeat Simple_repeat 1 94 0 277 172 17 0 chr12 130332419 130332477 -13453978 - FLAM SINE Alu -2 131 73 1593 160 37 24 chr12 130332478 130332680 -13453775 - AluSx SINE Alu -8 304 106 2345 112 0 0 chr12 130332680 130332983 -13453472 - AluSc SINE Alu -6 303 1 2087 133 27 3 chr12 130332988 130333289 -13453166 - AluSq SINE Alu -5 308 1 1593 160 37 24 chr12 130333289 130333374 -13453081 - AluSx SINE Alu -209 103 7 2368 104 0 7 chr12 130333446 130333754 -13452701 - AluSq SINE Alu -7 306 1 342 312 188 11 chr12 130334100 130334286 -13452169 - L2 LINE L2 -2989 325 107 468 122 11 22 chr12 130334291 130334381 -13452074 - AluS SINE Alu 0 312 224 2245 120 7 0 chr12 130334512 130334821 -13451634 + AluSx SINE Alu 2 312 0 1939 103 8 4 chr12 130334906 130335169 -13451286 - AluSc SINE Alu -17 292 29 598 158 0 0 chr12 130335225 130335320 -13451135 + AluSg/x SINE Alu 216 310 0 2348 85 0 3 chr12 130335649 130335943 -13450512 + AluSc SINE Alu 3 295 -14 1008 110 0 0 chr12 130336137 130336264 -13450191 + AluJb SINE Alu 1 127 -185 725 142 0 0 chr12 130336727 130336833 -13449622 + FLAM_A SINE Alu 21 126 -16 448 243 16 138 chr12 130337098 130337216 -13449239 + MIR SINE MIR 4 78 -184 1786 151 17 30 chr12 130337216 130337515 -13448940 - AluJo SINE Alu -17 295 1 448 243 16 138 chr12 130337515 130337643 -13448812 + MIR SINE MIR 78 220 -42 354 239 0 80 chr12 130337814 130337890 -13448565 + L1ME4a LINE L1 5541 5607 -514 2243 80 45 3 chr12 130337890 130338178 -13448277 + AluSg SINE Alu 1 300 -10 354 239 0 80 chr12 130338178 130338214 -13448241 + L1ME4a LINE L1 5607 5644 -477 488 227 13 129 chr12 130338232 130338406 -13448049 - MIR SINE MIR -1 261 117 718 165 15 15 chr12 130338406 130338539 -13447916 + FLAM_A SINE Alu 1 133 0 488 227 13 129 chr12 130338539 130338589 -13447866 - MIR SINE MIR -145 117 63 261 232 51 79 chr12 130338769 130338829 -13447626 + L1ME4a LINE L1 5762 5822 -299 2300 82 4 0 chr12 130338829 130339139 -13447316 + AluY SINE Alu 1 311 0 261 232 51 79 chr12 130339139 130339220 -13447235 + L1ME4a LINE L1 5822 5902 -219 2156 96 7 0 chr12 130339220 130339540 -13446915 + AluSg SINE Alu 1 322 0 261 232 51 79 chr12 130339540 130339572 -13446883 + L1ME4a LINE L1 5902 5933 -188 1172 177 0 0 chr12 130339674 130339849 -13446606 + AluSx SINE Alu 1 175 -137 1019 65 0 0 chr12 130339968 130340091 -13446364 - AluSq/x SINE Alu -189 123 1 242 95 0 248 chr12 130340091 130340160 -13446295 + Charlie5 DNA MER1_type 2507 2543 -42 2407 71 0 0 chr12 130340160 130340442 -13446013 - AluY SINE Alu -14 297 16 242 95 0 248 chr12 130340442 130340477 -13445978 + Charlie5 DNA MER1_type 2543 2585 0 667 204 28 57 chr12 130340477 130340658 -13445797 - L1ME3 LINE L1 -110 6052 5875 1995 143 0 7 chr12 130340658 130340967 -13445488 - AluJb SINE Alu 0 307 1 667 204 28 57 chr12 130340967 130340995 -13445460 - L1ME3 LINE L1 -287 5875 5848 1898 164 7 3 chr12 130340995 130341293 -13445162 + AluJo SINE Alu 1 299 -13 2452 76 16 0 chr12 130341407 130341710 -13444745 + AluY SINE Alu 1 308 -3 758 253 66 21 chr12 130341914 130342155 -13444300 - MIR SINE MIR -9 253 2 332 267 50 40 chr12 130342412 130342513 -13443942 - MIR3 SINE MIR -30 178 77 21 0 0 0 chr12 130342958 130342979 -13443476 + AT_rich Low_complexity Low_complexity 1 21 0 2005 117 39 26 chr12 130342986 130343294 -13443161 + AluSx SINE Alu 1 312 0 1008 183 17 71 chr12 130343346 130343586 -13442869 + AluJo SINE Alu 22 248 -64 414 0 0 0 chr12 130343725 130343771 -13442684 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 246 224 0 0 chr12 130343801 130343850 -13442605 + L2 LINE L2 3224 3272 0 2335 95 0 3 chr12 130343905 130344200 -13442255 + AluSg SINE Alu 1 294 -16 1238 134 0 0 chr12 130344200 130344371 -13442084 + AluSq SINE Alu 134 304 -9 1797 164 4 0 chr12 130344383 130344664 -13441791 + AluJo SINE Alu 14 295 -17 2111 131 3 0 chr12 130344702 130344993 -13441462 - AluSq SINE Alu -21 292 1 1046 186 0 16 chr12 130345302 130345476 -13440979 - AluJo SINE Alu -8 304 132 1816 177 0 19 chr12 130345476 130345649 -13440806 - AluSx SINE Alu -8 304 138 2343 106 0 0 chr12 130345649 130345952 -13440503 - AluSx SINE Alu -9 303 1 1816 177 0 19 chr12 130345952 130346088 -13440367 - AluSx SINE Alu -174 138 1 1046 186 0 16 chr12 130346088 130346101 -13440354 - AluJo SINE Alu -180 132 120 322 245 52 39 chr12 130346101 130346256 -13440199 + Charlie7 DNA MER1_type 2455 2611 -1 593 185 44 42 chr12 130346297 130346491 -13439964 + L1MB5 LINE L1 4928 5166 -980 1960 138 10 3 chr12 130346491 130346807 -13439648 + AluJo SINE Alu 1 312 0 593 185 44 42 chr12 130346807 130346840 -13439615 + L1MB5 LINE L1 5166 5197 -949 2244 121 7 3 chr12 130346840 130347147 -13439308 + AluSx SINE Alu 1 308 -4 1942 114 10 62 chr12 130347148 130347456 -13438999 + AluJb SINE Alu 1 292 -20 3303 168 68 80 chr12 130347471 130348051 -13438404 + L1MB5 LINE L1 5320 5888 -286 1940 147 3 7 chr12 130348051 130348344 -13438111 + AluJb SINE Alu 21 312 0 3303 168 68 80 chr12 130348344 130348597 -13437858 + L1MB5 LINE L1 5888 6143 -31 343 313 45 85 chr12 130348686 130348910 -13437545 - L1MC4a LINE L1 -1758 6050 5836 353 235 24 0 chr12 130349213 130349298 -13437157 + MIR SINE MIR 73 159 -103 222 157 39 0 chr12 130349727 130349778 -13436677 + G-rich Low_complexity Low_complexity 2 54 0 188 182 23 0 chr12 130349807 130349851 -13436604 + G-rich Low_complexity Low_complexity 6 50 0 947 161 0 11 chr12 130349919 130350277 -13436178 + GA-rich Low_complexity Low_complexity 1 353 0 1957 99 0 0 chr12 130350277 130350520 -13435935 + AluSq SINE Alu 1 243 -70 2308 102 0 22 chr12 130350537 130350850 -13435605 - AluSx SINE Alu -6 306 1 189 0 0 0 chr12 130350863 130350884 -13435571 + (A)n Simple_repeat Simple_repeat 1 21 0 438 171 9 18 chr12 130350890 130351001 -13435454 + GA-rich Low_complexity Low_complexity 4 113 0 612 206 0 23 chr12 130351015 130351190 -13435265 + GA-rich Low_complexity Low_complexity 4 174 0 469 277 92 4 chr12 130351190 130351445 -13435010 + L2 LINE L2 2780 3059 -254 308 270 56 0 chr12 130351678 130351767 -13434688 + MIR SINE MIR 49 142 -66 1416 133 93 75 chr12 130351769 130351933 -13434522 - AluSx SINE Alu 0 310 150 2135 108 0 33 chr12 130351933 130352239 -13434216 - AluSp SINE Alu -17 296 1 2350 90 0 0 chr12 130352239 130352529 -13433926 - AluSc SINE Alu -19 290 1 1416 133 93 75 chr12 130352529 130352668 -13433787 - AluSx SINE Alu -159 151 1 24 32 0 0 chr12 130352668 130352699 -13433756 + AT_rich Low_complexity Low_complexity 1 31 0 266 143 0 0 chr12 130352699 130352741 -13433714 - AluJb SINE Alu -177 125 84 991 165 0 123 chr12 130352741 130352947 -13433508 - AluJo SINE Alu -94 218 44 2210 100 4 0 chr12 130352947 130353255 -13433200 + AluSx SINE Alu 1 309 0 991 165 0 123 chr12 130353255 130353290 -13433165 - AluJo SINE Alu -268 44 6 2378 80 3 7 chr12 130353323 130353622 -13432833 + AluY SINE Alu 1 298 -13 641 230 52 39 chr12 130353761 130353989 -13432466 - MIR SINE MIR -12 250 15 979 205 0 0 chr12 130354178 130354349 -13432106 - AluJb SINE Alu -8 304 134 2094 130 27 0 chr12 130354349 130354649 -13431806 - AluSx SINE Alu -4 308 1 660 188 16 16 chr12 130355427 130355555 -13430900 + MIR SINE MIR 65 192 -70 601 99 0 0 chr12 130355659 130355740 -13430715 - FLAM_A SINE Alu -10 132 52 210 91 0 0 chr12 130355788 130355821 -13430634 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2074 134 10 0 chr12 130355835 130356134 -13430321 - AluSg SINE Alu -8 302 1 383 286 0 34 chr12 130356134 130356253 -13430202 - MIR SINE MIR -72 190 76 1291 211 55 97 chr12 130356454 130356637 -13429818 + L1ME3 LINE L1 5687 5876 -286 2162 119 6 19 chr12 130356637 130356949 -13429506 - AluSx SINE Alu 0 312 5 1291 211 55 97 chr12 130356949 130357137 -13429318 + L1ME3 LINE L1 5876 6034 -128 2341 104 0 0 chr12 130357137 130357436 -13429019 - AluSx SINE Alu -13 299 1 1291 211 55 97 chr12 130357436 130357556 -13428899 + L1ME3 LINE L1 6034 6158 -4 858 147 0 7 chr12 130357579 130357715 -13428740 - FLAM_C SINE Alu -8 135 1 267 211 28 0 chr12 130357727 130357798 -13428657 - MER113 DNA MER1_type? -405 116 44 1031 123 31 67 chr12 130357906 130358101 -13428354 - MER53 DNA DNA -1 188 1 667 277 79 10 chr12 130358892 130359094 -13427361 - MIR SINE MIR 0 262 47 2314 118 0 0 chr12 130359333 130359639 -13426816 + AluSx SINE Alu 1 306 -6 1396 203 19 12 chr12 130359803 130360124 -13426331 - L1ME1 LINE L1 -5 6161 5839 245 311 212 23 chr12 130360161 130360293 -13426162 + MIR SINE MIR 105 261 -1 * 344 219 0 27 chr12 130360282 130360355 -13426100 + L2 LINE L2 3172 3242 -71 471 261 9 9 chr12 130360383 130360498 -13425957 - MIR SINE MIR -124 138 24 1988 138 3 10 chr12 130360498 130360789 -13425666 - AluJb SINE Alu -18 294 6 1729 174 76 0 chr12 130360801 130361089 -13425366 - AluSx SINE Alu -2 310 1 396 211 56 87 chr12 130361263 130361424 -13425031 - MIR SINE MIR -1 261 106 2455 61 0 0 chr12 130361472 130361766 -13424689 + AluY SINE Alu 1 294 -17 1133 183 28 36 chr12 130361769 130361927 -13424528 - L1MA4 LINE L1 -15 6285 6128 2371 90 0 13 chr12 130361927 130362238 -13424217 - AluSx SINE Alu -5 307 1 1133 183 28 36 chr12 130362238 130362330 -13424125 - L1MA4 LINE L1 -172 6128 6037 288 247 10 52 chr12 130362956 130363053 -13423402 - MIR SINE MIR -148 114 22 386 259 111 52 chr12 130363253 130363269 -13423186 - MIR SINE MIR -15 247 233 1822 143 37 4 chr12 130363269 130363541 -13422914 - AluJb SINE Alu -31 281 1 386 259 111 52 chr12 130363541 130363639 -13422816 - MIR SINE MIR -29 233 142 2451 88 0 0 chr12 130363639 130363936 -13422519 - AluSq SINE Alu -16 297 1 386 259 111 52 chr12 130363936 130364044 -13422411 - MIR SINE MIR -120 142 7 347 252 151 42 chr12 130364309 130364428 -13422027 + MIR SINE MIR 21 152 -110 842 132 15 15 chr12 130364436 130364572 -13421883 + AluSq/x SINE Alu 1 136 -177 857 252 165 27 chr12 130364641 130365010 -13421445 + MLT1K LTR MaLR 45 464 -124 273 57 0 0 chr12 130365152 130365187 -13421268 + (TA)n Simple_repeat Simple_repeat 2 36 0 1887 131 11 4 chr12 130365187 130365461 -13420994 - AluSx SINE Alu -15 297 22 2218 124 0 0 chr12 130365484 130365783 -13420672 + AluSg SINE Alu 1 299 -11 720 120 83 0 chr12 130365793 130365921 -13420534 - FLAM_C SINE Alu 0 137 1 818 143 0 50 chr12 130365953 130366093 -13420362 + FLAM_C SINE Alu 11 143 0 375 219 29 48 chr12 130366112 130366217 -13420238 + L1MC4 LINE L1 6601 6703 -1339 376 255 10 41 chr12 130366219 130366317 -13420138 + L1MC4 LINE L1 6614 6708 -1334 201 217 0 22 chr12 130366318 130366364 -13420091 + (TA)n Simple_repeat Simple_repeat 2 46 0 531 230 31 68 chr12 130366977 130367103 -13419352 + MIR SINE MIR 20 149 -113 896 129 0 50 chr12 130367103 130367243 -13419212 + FLAM_C SINE Alu 1 133 0 531 230 31 68 chr12 130367243 130367257 -13419198 + MIR SINE MIR 149 156 -106 1622 134 24 102 chr12 130367257 130367592 -13418863 + AluYb8 SINE Alu 1 309 -9 531 230 31 68 chr12 130367592 130367611 -13418844 + MIR SINE MIR 156 174 -88 480 246 75 91 chr12 130367698 130367771 -13418684 - MIR SINE MIR 0 262 189 898 126 0 15 chr12 130367771 130367906 -13418549 + FLAM_C SINE Alu 1 133 0 480 246 75 91 chr12 130367906 130368084 -13418371 - MIR SINE MIR -73 189 15 2119 130 7 3 chr12 130368237 130368529 -13417926 - AluSg SINE Alu -16 294 2 998 202 0 0 chr12 130368540 130368708 -13417747 - FRAM SINE Alu -8 168 1 2163 125 0 0 chr12 130368721 130369010 -13417445 - AluSx SINE Alu -15 297 9 2554 76 0 13 chr12 130369416 130369731 -13416724 + AluSx SINE Alu 1 311 -1 596 268 42 26 chr12 130369756 130369946 -13416509 + MIR SINE MIR 2 194 -68 2449 88 0 7 chr12 130369956 130370261 -13416194 + AluSc SINE Alu 2 304 -5 2079 146 0 0 chr12 130370264 130370551 -13415904 + AluSg SINE Alu 3 289 -21 440 174 128 37 chr12 130370552 130370661 -13415794 + L1ME4a LINE L1 5926 6044 -77 1668 99 0 0 chr12 130370705 130370918 -13415537 - AluSc SINE Alu -5 304 92 23 33 0 0 chr12 130370956 130370986 -13415469 + AT_rich Low_complexity Low_complexity 1 30 0 2210 134 0 0 chr12 130370997 130371303 -13415152 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 130371508 130371529 -13414926 + AT_rich Low_complexity Low_complexity 1 21 0 911 130 15 0 chr12 130371536 130371667 -13414788 + FRAM SINE Alu 33 165 -11 2260 112 7 0 chr12 130371763 130372059 -13414396 - AluSx SINE Alu -14 298 1 2524 87 0 0 chr12 130372079 130372389 -13414066 - AluSg SINE Alu 0 310 1 253 365 43 5 chr12 130372398 130372606 -13413849 - L1ME LINE L1 -303 5818 5603 1835 178 24 0 chr12 130372651 130372983 -13413472 - MER2 DNA MER2_type -5 340 1 1887 138 50 10 chr12 130373037 130373335 -13413120 + AluSg SINE Alu 1 310 0 316 252 38 124 chr12 130373640 130373744 -13412711 - L1ME4a LINE L1 -5 6116 6037 2081 102 34 3 chr12 130373744 130374038 -13412417 + AluSx SINE Alu 1 303 -9 316 252 38 124 chr12 130374038 130374143 -13412312 - L1ME4a LINE L1 -84 6037 5925 254 175 0 50 chr12 130374642 130374762 -13411693 + (TG)n Simple_repeat Simple_repeat 1 114 0 201 163 0 61 chr12 130374762 130374811 -13411644 + GA-rich Low_complexity Low_complexity 4 49 0 550 243 243 0 chr12 130374842 130375019 -13411436 - MIR SINE MIR 0 262 43 2265 118 0 0 chr12 130375045 130375342 -13411113 + AluSx SINE Alu 1 297 -15 305 172 204 0 chr12 130375364 130375457 -13410998 + L1ME1 LINE L1 6049 6160 -6 2189 138 0 3 chr12 130375472 130375784 -13410671 - AluSx SINE Alu -1 311 1 1771 180 3 19 chr12 130375816 130376132 -13410323 + AluJo SINE Alu 1 311 -1 225 286 33 33 chr12 130376222 130376313 -13410142 + L2 LINE L2 3182 3272 0 214 170 113 19 chr12 130376316 130376369 -13410086 + MIR SINE MIR 93 150 -58 205 193 24 121 chr12 130376398 130376481 -13409974 + L2 LINE L2 3015 3089 -183 217 289 217 0 chr12 130376654 130376737 -13409718 + L2 LINE L2 3172 3272 0 2239 115 0 0 chr12 130376781 130377077 -13409378 + AluSq SINE Alu 1 296 -17 291 253 167 75 chr12 130377273 130377461 -13408994 + MIR SINE MIR 31 214 -13 2099 110 0 0 chr12 130377478 130377751 -13408704 - AluSx SINE Alu -18 294 22 873 124 0 8 chr12 130377761 130377882 -13408573 - FLAM_C SINE Alu -19 124 5 1905 182 3 3 chr12 130377934 130378241 -13408214 - AluJb SINE Alu -1 311 5 700 277 85 0 chr12 130378308 130378496 -13407959 - MIR SINE MIR -8 254 51 951 198 12 0 chr12 130378503 130378675 -13407780 - MER5A DNA MER1_type -12 177 4 829 163 0 15 chr12 130379038 130379173 -13407282 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr12 130379364 130379653 -13406802 - AluSx SINE Alu -23 289 1 411 156 0 0 chr12 130379775 130379839 -13406616 + L1MC1 LINE L1 6063 6126 -207 972 94 0 0 chr12 130379841 130379968 -13406487 + AluSc SINE Alu 1 127 -182 1182 174 31 0 chr12 130379968 130380163 -13406292 + AluSc SINE Alu 1 201 -108 1087 110 0 0 chr12 130380177 130380323 -13406132 + AluSp/q SINE Alu 154 299 -14 1307 119 0 0 chr12 130380323 130380499 -13405956 + AluSp SINE Alu 121 296 -17 811 148 7 28 chr12 130380501 130380643 -13405812 + L1MC1 LINE L1 6186 6324 -9 2559 59 0 13 chr12 130380677 130380984 -13405471 + AluY SINE Alu 1 303 -8 1992 135 4 4 chr12 130380984 130381264 -13405191 - AluJo SINE Alu -31 281 1 2252 112 3 0 chr12 130381290 130381584 -13404871 + AluSx SINE Alu 1 295 -17 2284 98 3 3 chr12 130381587 130381883 -13404572 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr12 130381883 130381903 -13404552 + (GA)n Simple_repeat Simple_repeat 2 21 0 359 246 78 22 chr12 130381995 130382160 -13404295 - MIR SINE MIR -50 212 40 2171 104 10 0 chr12 130382378 130382666 -13403789 + AluSq SINE Alu 1 291 -22 2468 76 0 10 chr12 130382666 130382969 -13403486 + AluY SINE Alu 8 307 -4 649 275 61 35 chr12 130383296 130383525 -13402930 - MIR SINE MIR 0 262 28 738 109 58 6 chr12 130383576 130383732 -13402723 + CT-rich Low_complexity Low_complexity 3 166 0 186 43 0 0 chr12 130383735 130383758 -13402697 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2048 99 54 7 chr12 130383763 130384057 -13402398 - AluSx SINE Alu -4 308 1 2328 122 0 0 chr12 130384100 130384412 -13402043 - AluSx SINE Alu 0 312 1 272 265 122 0 chr12 130384470 130384568 -13401887 - L2 LINE L2 -4 3268 3159 1896 147 0 49 chr12 130384585 130384892 -13401563 - AluJo SINE Alu -20 292 1 423 325 24 0 chr12 130384945 130385068 -13401387 + MER5A DNA MER1_type 64 189 0 2109 109 33 20 chr12 130385122 130385424 -13401031 - AluSx SINE Alu -6 306 1 974 116 0 0 chr12 130385497 130385626 -13400829 - FLAM_C SINE Alu 0 133 5 405 318 11 48 chr12 130386262 130386451 -13400004 + MIR SINE MIR 13 194 -68 328 349 26 20 chr12 130386499 130386651 -13399804 - L1MC4 LINE L1 -1334 6708 6556 316 250 180 0 chr12 130386626 130386754 -13399701 + L1MCa LINE L1 1918 2068 -4358 * 183 100 0 0 chr12 130386767 130386797 -13399658 + (TG)n Simple_repeat Simple_repeat 2 31 0 1653 133 18 59 chr12 130386797 130386949 -13399506 - AluJo SINE Alu -28 284 127 245 27 54 0 chr12 130386949 130386986 -13399469 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2220 100 0 0 chr12 130386986 130387266 -13399189 - AluY SINE Alu -30 281 2 2407 94 0 22 chr12 130387271 130387589 -13398866 - AluSx SINE Alu -1 311 1 1653 133 18 59 chr12 130387589 130387715 -13398740 - AluJo SINE Alu -188 124 11 575 263 0 0 chr12 130387729 130387885 -13398570 - L1PB4 LINE L1 -1 6155 6000 1277 153 45 18 chr12 130387920 130388142 -13398313 - AluJb SINE Alu -84 228 1 183 377 0 0 chr12 130388145 130388206 -13398249 + MIR SINE MIR 201 261 -1 271 264 11 66 chr12 130388218 130388309 -13398146 - L2 LINE L2 -36 3277 3192 2211 77 14 17 chr12 130388309 130388606 -13397849 - AluY SINE Alu -14 297 2 446 149 0 0 chr12 130388635 130388709 -13397746 + AluS SINE Alu 231 304 -7 2286 95 3 0 chr12 130388725 130389029 -13397426 - AluSp SINE Alu 0 305 1 1785 141 32 14 chr12 130389036 130389319 -13397136 - AluJo SINE Alu -24 288 1 195 129 0 0 chr12 130389541 130389572 -13396883 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1183 141 0 0 chr12 130389604 130389767 -13396688 + AluSg/x SINE Alu 134 296 -14 402 261 11 0 chr12 130389768 130389856 -13396599 - L2 LINE L2 -25 3288 3200 440 247 106 40 chr12 130389869 130390144 -13396311 - L2 LINE L2 -273 2999 2693 1015 126 0 0 chr12 130390148 130390283 -13396172 + AluJb SINE Alu 1 135 -177 1502 91 0 0 chr12 130390283 130390469 -13395986 + AluSq SINE Alu 1 186 -127 1772 69 0 9 chr12 130390474 130390692 -13395763 - AluSx SINE Alu -96 216 1 326 44 59 103 chr12 130390724 130390792 -13395663 + AluY SINE Alu 238 302 0 238 191 0 0 chr12 130391062 130391104 -13395351 - L2 LINE L2 -85 3228 3187 2191 78 17 7 chr12 130391149 130391443 -13395012 - AluY SINE Alu -14 297 1 980 131 0 15 chr12 130391443 130391580 -13394875 - AluSq/x SINE Alu -177 135 1 881 158 0 0 chr12 130391616 130391749 -13394706 - FLAM_C SINE Alu 0 133 1 309 159 79 0 chr12 130391784 130391847 -13394608 - L1ME4a LINE L1 -1 6120 6053 505 271 144 6 chr12 130392073 130392254 -13394201 - MIR SINE MIR 0 262 57 2439 75 0 0 chr12 130392281 130392575 -13393880 + AluSg SINE Alu 1 294 -16 1837 179 4 0 chr12 130392576 130392855 -13393600 - AluJb SINE Alu -32 280 1 2502 84 0 0 chr12 130392974 130393272 -13393183 + AluSx SINE Alu 1 298 -14 470 294 54 39 chr12 130393680 130393884 -13392571 - MIR SINE MIR -50 212 6 1077 100 93 0 chr12 130393993 130394143 -13392312 - AluSg/x SINE Alu -15 295 132 2238 93 3 33 chr12 130394143 130394444 -13392011 - AluSq SINE Alu -21 292 1 2249 112 7 0 chr12 130394444 130394747 -13391708 - AluSx SINE Alu -7 305 1 2540 77 0 0 chr12 130395037 130395335 -13391120 - AluSq SINE Alu -13 300 3 298 196 0 0 chr12 130395353 130395404 -13391051 - MIR SINE MIR -2 260 210 298 209 45 30 chr12 130395408 130395475 -13390980 + MIR SINE MIR 2 69 -193 1116 189 17 0 chr12 130395475 130395655 -13390800 + AluJo SINE Alu 1 183 -129 2286 101 0 3 chr12 130395660 130395948 -13390507 + AluSx SINE Alu 6 292 -20 188 217 200 0 chr12 130396015 130396075 -13390380 - MIR SINE MIR -129 79 14 779 145 0 0 chr12 130396075 130396192 -13390263 - FLAM_A SINE Alu -6 136 20 241 261 98 11 chr12 130396407 130396499 -13389956 - MIR SINE MIR -140 122 23 2092 122 7 3 chr12 130396516 130396820 -13389635 - AluSx SINE Alu -7 305 1 2197 126 3 3 chr12 130396820 130397121 -13389334 - AluSq SINE Alu -12 301 1 702 202 32 0 chr12 130397269 130397393 -13389062 - FLAM_C SINE Alu -9 134 7 234 0 0 0 chr12 130397426 130397452 -13389003 + (A)n Simple_repeat Simple_repeat 1 26 0 2261 108 6 16 chr12 130397452 130397768 -13388687 + AluSq SINE Alu 1 313 0 212 278 0 19 chr12 130397780 130397834 -13388621 - MIR SINE MIR -140 68 16 435 236 156 92 chr12 130397857 130398107 -13388348 - L2 LINE L2 0 3313 3048 231 36 0 0 chr12 130399130 130399158 -13387297 + (T)n Simple_repeat Simple_repeat 1 28 0 906 138 0 7 chr12 130399265 130399410 -13387045 + AluSg/x SINE Alu 167 310 -2 2163 98 0 17 chr12 130399588 130399885 -13386570 + AluSq SINE Alu 1 292 -21 289 77 0 0 chr12 130399890 130399929 -13386526 - U2 snRNA snRNA -149 39 1 216 0 0 0 chr12 130399937 130399961 -13386494 + (TTA)n Simple_repeat Simple_repeat 1 24 0 862 189 34 99 chr12 130400077 130400310 -13386145 - MER20 DNA MER1_type -1 218 1 197 226 28 160 chr12 130400389 130400495 -13385960 - MER5A DNA MER1_type -95 94 3 1910 103 85 4 chr12 130401342 130401613 -13384842 + AluSx SINE Alu 1 293 -19 2515 76 0 0 chr12 130401808 130402110 -13384345 - AluY SINE Alu -9 302 1 2410 79 3 7 chr12 130402296 130402628 -13383827 - AluYa5 SINE Alu 0 331 1 2279 98 0 3 chr12 130402636 130402945 -13383510 - AluSp SINE Alu 0 308 1 1862 178 24 0 chr12 130403418 130403710 -13382745 - AluJb SINE Alu -13 299 1 1840 110 110 0 chr12 130403880 130404143 -13382312 + AluSg SINE Alu 1 292 -18 2120 138 0 0 chr12 130405452 130405749 -13380706 + AluSx SINE Alu 1 297 -15 225 291 37 3 chr12 130405870 130406007 -13380448 + MIR SINE MIR 41 222 -40 191 289 10 0 chr12 130407249 130407319 -13379136 - MIR SINE MIR -67 141 69 2375 71 7 10 chr12 130407408 130407718 -13378737 - AluSg1 SINE Alu 0 309 1 226 336 138 18 chr12 130407753 130407970 -13378485 + L2 LINE L2 2844 3086 -227 1714 193 10 3 chr12 130408097 130408397 -13378058 - AluSx SINE Alu -10 302 1 1261 176 137 0 chr12 130408434 130408661 -13377794 - AluJo SINE Alu -15 297 40 2126 141 0 0 chr12 130408675 130408966 -13377489 - AluSx SINE Alu -15 297 7 2351 90 0 0 chr12 130408986 130409275 -13377180 - AluSg SINE Alu -9 301 13 2162 97 24 7 chr12 130409299 130409597 -13376858 - AluY SINE Alu -8 303 1 235 0 0 0 chr12 130409779 130409805 -13376650 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2024 114 14 0 chr12 130409805 130410086 -13376369 - AluSx SINE Alu -27 285 1 2499 74 3 0 chr12 130410105 130410401 -13376054 - AluSp SINE Alu -16 297 1 2376 96 0 7 chr12 130411199 130411500 -13374955 + AluSx SINE Alu 1 299 -13 2115 119 3 0 chr12 130411504 130411799 -13374656 + AluSg SINE Alu 1 296 -14 2226 110 0 0 chr12 130411799 130412104 -13374351 + AluSx SINE Alu 1 305 0 420 297 89 20 chr12 130412179 130412212 -13374243 - MIR SINE MIR -24 238 209 2364 99 3 0 chr12 130412212 130412516 -13373939 - AluSx SINE Alu -7 305 1 420 297 89 20 chr12 130412516 130412684 -13373771 - MIR SINE MIR -53 209 23 1417 150 0 52 chr12 130412808 130413041 -13373414 - AluJo SINE Alu -91 221 1 1759 160 32 3 chr12 130413053 130413335 -13373120 - AluJb SINE Alu -22 290 1 856 232 36 5 chr12 130413669 130413863 -13372592 - MER105 DNA DNA -2 202 3 866 175 0 0 chr12 130414040 130414166 -13372289 + FLAM_A SINE Alu 1 126 -7 234 0 0 0 chr12 130414170 130414196 -13372259 + (CAA)n Simple_repeat Simple_repeat 2 27 0 316 239 94 17 chr12 130414524 130414641 -13371814 - Charlie8 DNA MER1_type -2141 276 151 296 258 375 0 chr12 130414645 130414773 -13371682 - MIR SINE MIR -71 191 16 2012 78 43 25 chr12 130414773 130415054 -13371401 - AluY SINE Alu -25 286 1 1935 148 18 0 chr12 130415244 130415522 -13370933 - AluSx SINE Alu -29 283 1 2009 122 31 0 chr12 130415522 130415808 -13370647 - AluSx SINE Alu -17 295 1 2599 34 0 3 chr12 130416029 130416325 -13370130 - AluY SINE Alu -16 295 1 190 349 108 50 chr12 130416826 130417067 -13369388 + L2 LINE L2 2824 3078 -194 2133 75 4 4 chr12 130417943 130418210 -13368245 - AluSp SINE Alu -9 304 38 468 245 112 102 chr12 130418364 130418439 -13368016 - Charlie8 DNA MER1_type -138 203 130 2049 96 57 7 chr12 130418439 130418721 -13367734 - AluSg1 SINE Alu -13 296 1 468 245 112 102 chr12 130418721 130418841 -13367614 - Charlie8 DNA MER1_type -211 130 6 2385 78 3 0 chr12 130419205 130419499 -13366956 - AluY SINE Alu -16 295 1 2453 65 7 3 chr12 130419915 130420223 -13366232 + AluY SINE Alu 1 309 -2 2420 72 21 0 chr12 130421064 130421354 -13365101 + AluY SINE Alu 1 296 -15 1600 160 31 21 chr12 130421443 130421730 -13364725 - AluJo SINE Alu -15 297 8 27 0 0 0 chr12 130422237 130422264 -13364191 + AT_rich Low_complexity Low_complexity 1 27 0 501 241 159 12 chr12 130422581 130422751 -13363704 - MIR SINE MIR 0 262 68 274 216 0 0 chr12 130422815 130422866 -13363589 - L3b LINE CR1 -7 1576 1526 296 397 82 9 chr12 130422911 130423143 -13363312 - MIR SINE MIR -6 256 8 744 192 16 0 chr12 130423628 130423753 -13362702 + FLAM_A SINE Alu 1 127 -6 27 0 0 0 chr12 130423759 130423786 -13362669 + AT_rich Low_complexity Low_complexity 1 27 0 184 277 169 0 chr12 130425884 130425949 -13360506 - MIR SINE MIR 0 262 187 690 156 244 0 chr12 130426571 130426706 -13359749 + AluJb SINE Alu 134 301 -11 344 149 60 0 chr12 130426760 130426827 -13359628 + FLAM_A SINE Alu 62 132 -1 1867 158 10 0 chr12 130426884 130427176 -13359279 - AluJo SINE Alu -17 295 1 1885 144 34 7 chr12 130427568 130427866 -13358589 + AluSx SINE Alu 1 306 -6 389 253 151 7 chr12 130427869 130428015 -13358440 + MIR SINE MIR 46 212 -50 2068 134 3 0 chr12 130428154 130428452 -13358003 + AluSq SINE Alu 1 299 -14 723 174 7 54 chr12 130428494 130428643 -13357812 + FLAM_C SINE Alu 2 143 0 240 226 0 57 chr12 130429651 130429757 -13356698 + G-rich Low_complexity Low_complexity 3 102 0 216 247 11 21 chr12 130429910 130430003 -13356452 + (CCG)n Simple_repeat Simple_repeat 2 93 0 1183 159 129 8 chr12 130430811 130431075 -13355380 - AluJb SINE Alu -5 297 2 2278 99 7 0 chr12 130431104 130431397 -13355058 + AluSx SINE Alu 1 295 -17 2058 120 6 43 chr12 130431423 130431747 -13354708 + AluSx SINE Alu 1 312 0 470 294 127 61 chr12 130431838 130431951 -13354504 + L1ME4a LINE L1 5518 5622 -499 2425 80 0 3 chr12 130431951 130432252 -13354203 - AluY SINE Alu -11 300 1 470 294 127 61 chr12 130432252 130432383 -13354072 + L1ME4a LINE L1 5622 5778 -343 233 218 132 63 chr12 130432487 130432661 -13353794 + L1ME4a LINE L1 5935 6120 -1 442 242 83 23 chr12 130433491 130433623 -13352832 - L2 LINE L2 -192 3080 2941 966 174 41 23 chr12 130433626 130433754 -13352701 + AluJ SINE Alu 2 135 -177 2311 110 7 3 chr12 130433754 130434063 -13352392 + AluSx SINE Alu 2 311 -1 966 174 41 23 chr12 130434063 130434106 -13352349 + AluJ SINE Alu 135 176 -136 569 96 0 0 chr12 130434107 130434180 -13352275 - AluJ/FLAM SINE Alu -228 84 12 971 154 0 7 chr12 130434181 130434324 -13352131 + AluJ SINE Alu 154 295 -17 1429 147 0 0 chr12 130434442 130434646 -13351809 + AluJb SINE Alu 84 287 -25 722 53 0 80 chr12 130434812 130434925 -13351530 + L1PB1 LINE L1 6046 6149 -2 1068 194 15 5 chr12 130435872 130436078 -13350377 + MER3 DNA MER1_type 2 209 0 229 194 0 0 chr12 130436180 130436216 -13350239 + L2 LINE L2 3268 3303 -10 28 29 0 0 chr12 130436649 130436684 -13349771 + AT_rich Low_complexity Low_complexity 1 35 0 2439 77 3 3 chr12 130436948 130437247 -13349208 - AluSp SINE Alu -12 301 3 2375 113 3 0 chr12 130437257 130437568 -13348887 - AluSx SINE Alu 0 312 1 297 233 86 78 chr12 130437686 130437802 -13348653 - L2 LINE L2 -1 3271 3155 1488 159 111 0 chr12 130437822 130437927 -13348528 + AluJo SINE Alu 1 93 -219 248 49 49 0 chr12 130437927 130437968 -13348487 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1488 159 111 0 chr12 130437968 130438132 -13348323 + AluJo SINE Alu 93 300 -12 2067 111 31 14 chr12 130438142 130438430 -13348025 - AluSq SINE Alu -20 293 1 2356 97 10 0 chr12 130438435 130438744 -13347711 - AluSp SINE Alu -1 312 1 901 133 0 30 chr12 130438748 130438883 -13347572 - FLAM_C SINE Alu -2 131 1 935 87 0 0 chr12 130438906 130439021 -13347434 + AluSq/x SINE Alu 1 115 -198 1201 127 6 0 chr12 130439022 130439188 -13347267 - AluSg/x SINE Alu -12 300 134 368 113 0 0 chr12 130539188 130539241 -13247214 + FLAM SINE Alu 59 111 -22 823 234 0 46 chr12 130539243 130539382 -13247073 + L2 LINE L2 2098 2225 -1089 1958 110 27 3 chr12 130539382 130539681 -13246774 - AluSg SINE Alu -2 308 3 823 234 0 46 chr12 130539681 130539759 -13246696 + L2 LINE L2 2225 2305 -1009 288 284 59 0 chr12 130539801 130539903 -13246552 - L2 LINE L2 -623 2691 2584 1017 174 0 0 chr12 130539945 130540117 -13246338 + FRAM SINE Alu 1 164 -12 1465 208 39 177 chr12 130540303 130540524 -13245931 - L2 LINE L2 -1 3312 3062 318 26 0 0 chr12 130540524 130540563 -13245892 + (TG)n Simple_repeat Simple_repeat 2 40 0 1465 208 39 177 chr12 130540563 130540660 -13245795 - L2 LINE L2 -251 3062 2953 1839 84 56 0 chr12 130540660 130540911 -13245544 + AluY SINE Alu 38 302 -9 1465 208 39 177 chr12 130540911 130541115 -13245340 - L2 LINE L2 -360 2953 2964 2259 93 0 0 chr12 130541115 130541415 -13245040 - AluSq SINE Alu -13 300 1 1465 208 39 177 chr12 130541415 130541768 -13244687 - L2 LINE L2 -348 2965 2565 508 232 79 17 chr12 130541775 130541952 -13244503 - L1MC5 LINE L1 -29 7932 7745 1978 237 56 11 chr12 130541955 130542491 -13243964 - L2 LINE L2 -772 2542 1983 1964 140 3 7 chr12 130542495 130542803 -13243652 + AluJb SINE Alu 5 311 -1 580 301 104 39 chr12 130542869 130543255 -13243200 - L2 LINE L2 -560 2754 2344 815 204 14 0 chr12 130543387 130543534 -13242921 - FRAM SINE Alu -30 146 1 240 370 151 0 chr12 130543619 130543811 -13242644 - L2 LINE L2 -1321 1993 1773 360 256 116 8 chr12 130544349 130544470 -13241985 - LTR16C LTR ERVL 0 491 358 1052 76 35 0 chr12 130544479 130544650 -13241805 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1463 139 8 42 chr12 130544658 130544917 -13241538 - AluJb SINE Alu -21 291 42 323 204 87 48 chr12 130544917 130545000 -13241455 - AluJo SINE Alu -127 170 100 702 181 0 0 chr12 130545000 130545116 -13241339 + AluJb SINE Alu 180 295 -17 2111 97 7 10 chr12 130545344 130545652 -13240803 + AluSx SINE Alu 1 307 -5 753 221 60 74 chr12 130545679 130545978 -13240477 + MLT1H LTR MaLR 29 323 -226 325 348 0 0 chr12 130545978 130546067 -13240388 + L1MC4 LINE L1 6615 6703 -1339 * 366 232 12 46 chr12 130546026 130546143 -13240312 - L1MC4 LINE L1 -1339 6983 1959 238 11 35 92 chr12 130546144 130546231 -13240224 + (TA)n Simple_repeat Simple_repeat 1 82 0 317 226 39 69 chr12 130546233 130546325 -13240130 + L1MC4 LINE L1 6614 6704 -1338 2182 103 0 3 chr12 130546325 130546626 -13239829 - AluSq SINE Alu -13 300 1 774 220 75 25 chr12 130546780 130547021 -13239434 - PABL_B LTR ERV1 -4 663 411 1980 140 0 0 chr12 130547078 130547370 -13239085 - AluSx SINE Alu -19 293 2 719 118 0 31 chr12 130547483 130547610 -13238845 - LTR19C LTR ERV1 -350 429 307 1827 163 264 53 chr12 130547741 130548111 -13238344 + MLT2B3 LTR ERVL 3 488 -66 2234 88 143 29 chr12 130548111 130548298 -13238157 + MSTA LTR MaLR 1 165 -263 1654 133 12 0 chr12 130548298 130548554 -13237901 + AluSx SINE Alu 42 300 -12 2234 88 143 29 chr12 130548554 130548750 -13237705 + MSTA LTR MaLR 165 428 0 1827 163 264 53 chr12 130548750 130548834 -13237621 + MLT2B3 LTR ERVL 488 553 -1 1679 174 7 3 chr12 130548914 130549201 -13237254 - AluJo SINE Alu -24 288 1 314 179 0 0 chr12 130549212 130549268 -13237187 + MLT1K LTR MaLR 523 578 -10 255 291 27 36 chr12 130549274 130549384 -13237071 - L2 LINE L2 -2207 1107 999 975 123 65 0 chr12 130549934 130550089 -13236366 - MLT1J LTR MaLR -346 165 1 472 207 11 0 chr12 130550361 130550448 -13236007 - L2 LINE L2 0 3272 3185 827 283 44 0 chr12 130550469 130550720 -13235735 + MIR SINE MIR 1 262 0 1871 135 0 32 chr12 130550822 130551134 -13235321 - AluSx SINE Alu -10 302 1 448 235 27 40 chr12 130551204 130551353 -13235102 + LTR16A1 LTR ERVL 1 147 -310 859 145 0 81 chr12 130551376 130551548 -13234907 + AluSg/x SINE Alu 152 309 -3 242 230 53 13 chr12 130551558 130551654 -13234801 + L1M LINE L1 5258 5356 -977 2029 109 0 23 chr12 130551786 130552089 -13234366 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr12 130552175 130552196 -13234259 + AT_rich Low_complexity Low_complexity 1 21 0 41 41 0 14 chr12 130552222 130552241 -13234214 + AT_rich Low_complexity Low_complexity 1 19 -53 1648 132 0 4 chr12 130552241 130552492 -13233963 - AluJb SINE Alu -24 288 39 41 41 0 14 chr12 130552492 130552545 -13233910 + AT_rich Low_complexity Low_complexity 19 72 0 210 162 0 0 chr12 130552622 130552659 -13233796 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1308 176 67 11 chr12 130552795 130553079 -13233376 + AluJo SINE Alu 1 300 -12 2234 115 0 0 chr12 130553192 130553504 -13232951 + AluSx SINE Alu 1 312 0 844 179 22 22 chr12 130554461 130554640 -13231815 + AluJo SINE Alu 123 301 -11 566 250 6 64 chr12 130554640 130554773 -13231682 - MER3 DNA MER1_type 0 162 40 1536 160 25 7 chr12 130554773 130555055 -13231400 + AluJb SINE Alu 5 291 -21 566 250 6 64 chr12 130555055 130555093 -13231362 - MER3 DNA MER1_type -122 40 1 1085 254 28 13 chr12 130555176 130555631 -13230824 - L1MD2 LINE L1 -12 6347 5835 2012 133 0 3 chr12 130555645 130555953 -13230502 - AluSx SINE Alu -5 307 1 247 230 62 53 chr12 130555970 130556083 -13230372 - L1ME LINE L1 -5906 164 51 2218 103 0 3 chr12 130556620 130556932 -13229523 + AluSx SINE Alu 1 311 -1 1893 118 6 63 chr12 130556938 130557269 -13229186 + AluSx SINE Alu 1 312 0 1605 169 35 7 chr12 130557993 130558277 -13228178 - AluJo SINE Alu -20 292 1 2249 74 16 19 chr12 130558608 130558920 -13227535 - AluY SINE Alu 0 311 1 59 27 0 0 chr12 130559006 130559079 -13227376 + AT_rich Low_complexity Low_complexity 1 73 0 801 138 0 0 chr12 130559079 130559195 -13227260 - FLAM_C SINE Alu -17 116 1 378 0 0 0 chr12 130559271 130559313 -13227142 + (CAT)n Simple_repeat Simple_repeat 2 43 0 300 228 62 117 chr12 130559388 130559533 -13226922 - MIR3 SINE MIR -67 141 5 2011 81 44 34 chr12 130559869 130560167 -13226288 - AluSx SINE Alu -2 310 10 268 43 43 0 chr12 130560317 130560363 -13226092 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 2057 74 64 7 chr12 130560903 130561199 -13225256 + AluSq SINE Alu 1 313 0 1310 136 28 9 chr12 130561324 130561538 -13224917 + AluJb SINE Alu 85 302 -10 582 331 53 16 chr12 130562247 130562296 -13224159 - MIR SINE MIR -3 259 213 1745 158 7 19 chr12 130562296 130562606 -13223849 - AluJb SINE Alu -6 306 1 582 331 53 16 chr12 130562606 130562801 -13223654 - MIR SINE MIR -49 213 6 335 257 0 0 chr12 130562822 130562892 -13223563 - L2 LINE L2 -18 3295 3226 339 227 0 0 chr12 130562960 130563026 -13223429 + L2 LINE L2 3207 3272 0 2094 101 20 7 chr12 130563445 130563741 -13222714 + AluSx SINE Alu 1 300 -12 2797 10 0 0 chr12 130563747 130564059 -13222396 + AluYb8 SINE Alu 1 312 -6 665 167 8 68 chr12 130564097 130564229 -13222226 - FLAM_A SINE Alu -9 124 1 2201 105 0 6 chr12 130564582 130564897 -13221558 - AluSq SINE Alu 0 313 1 3523 197 59 53 chr12 130565301 130565653 -13220802 - L1MCa LINE L1 -4559 1867 1519 1662 190 3 3 chr12 130565653 130565958 -13220497 - AluJb SINE Alu -7 305 1 3523 197 59 53 chr12 130565958 130566024 -13220431 - L1MCa LINE L1 -4907 1519 1455 2195 107 7 0 chr12 130566024 130566334 -13220121 - AluSx SINE Alu 0 312 1 3523 197 59 53 chr12 130566334 130566959 -13219496 - L1MCa LINE L1 -4971 1455 816 2005 117 0 3 chr12 130567005 130567296 -13219159 + AluSq SINE Alu 1 290 -23 290 287 93 16 chr12 130567646 130567775 -13218680 + MIR SINE MIR 14 152 -110 997 105 0 0 chr12 130568100 130568233 -13218222 + AluSq/x SINE Alu 1 133 -180 26 30 0 0 chr12 130568580 130568613 -13217842 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr12 130568825 130568872 -13217583 + AT_rich Low_complexity Low_complexity 1 47 0 982 179 134 0 chr12 130569220 130569443 -13217012 - HSATI Satellite Satellite -14 563 311 65 43 0 0 chr12 130569757 130569850 -13216605 + AT_rich Low_complexity Low_complexity 1 93 0 886 129 0 0 chr12 130570074 130570206 -13216249 - AluJb SINE Alu -17 295 164 1888 155 0 0 chr12 130570220 130570517 -13215938 + AluJo SINE Alu 2 298 -14 2370 76 0 0 chr12 130570517 130570818 -13215637 + AluY SINE Alu 1 301 -10 2149 116 3 0 chr12 130571018 130571321 -13215134 - AluSp SINE Alu -7 306 3 2293 250 33 33 chr12 130571433 130572065 -13214390 + L1MB7 LINE L1 1 632 -5910 1946 228 41 5 chr12 130572065 130572508 -13213947 + MER68 LTR ERV1 104 562 0 1979 195 37 52 chr12 130572517 130572792 -13213663 + L1MB7 LINE L1 1101 1379 -5267 1795 207 46 18 chr12 130572792 130573246 -13213209 - MLT1C LTR MaLR 0 467 1 1979 195 37 52 chr12 130573246 130573652 -13212803 + L1MB7 LINE L1 1379 1792 -4854 1246 167 84 0 chr12 130573652 130573915 -13212540 + L1MA9 LINE L1 6025 6309 -3 1020 237 26 11 chr12 130573918 130574184 -13212271 + L1MB7 LINE L1 1805 2074 -4572 804 191 259 8 chr12 130574233 130574469 -13211986 + AluYa8 SINE Alu 5 299 -11 1133 228 35 74 chr12 130574529 130575351 -13211104 + L1MB7 LINE L1 2259 3040 -3604 6385 69 18 49 chr12 130575372 130577722 -13208733 + SVA Other Other 5 1386 0 3250 213 60 78 chr12 130577742 130578617 -13207838 + L1MB7 LINE L1 3025 3914 -2730 2478 62 0 0 chr12 130578617 130578922 -13207533 + AluY SINE Alu 1 305 -6 3250 213 60 78 chr12 130578922 130579309 -13207146 + L1MB7 LINE L1 3914 4262 -2382 1947 136 3 16 chr12 130579309 130579625 -13206830 + AluJb SINE Alu 1 312 0 3250 213 60 78 chr12 130579625 130579762 -13206693 + L1MB7 LINE L1 4262 4400 -2244 1360 221 22 68 chr12 130580439 130580674 -13205781 + L1MB7 LINE L1 4379 4584 -2060 2286 90 3 0 chr12 130580674 130580973 -13205482 - AluSp SINE Alu -13 300 1 1360 221 22 68 chr12 130580973 130581190 -13205265 + L1MB7 LINE L1 4584 4810 -1834 647 185 13 0 chr12 130581195 130581346 -13205109 + L1MA7 LINE L1 6139 6291 0 415 209 32 14 chr12 130581352 130581460 -13204995 - L1MC/D LINE L1 -489 5632 5538 3186 231 56 24 chr12 130581552 130581647 -13204808 + L1MB7 LINE L1 4817 4908 -1774 1837 149 0 0 chr12 130581647 130581962 -13204493 + AluSx SINE Alu 1 315 0 3186 231 56 24 chr12 130581962 130582491 -13203964 + L1MB7 LINE L1 4908 5419 -1263 1809 130 0 11 chr12 130582491 130582796 -13203659 + AluSx SINE Alu 17 312 0 3186 231 56 24 chr12 130582796 130583473 -13202982 + L1MB7 LINE L1 5419 6196 -486 2311 68 14 0 chr12 130583473 130583765 -13202690 + AluSp SINE Alu 3 298 -15 3186 231 56 24 chr12 130583765 130584250 -13202205 + L1MB7 LINE L1 6196 6664 -18 288 350 124 18 chr12 130584658 130584875 -13201580 + MIR SINE MIR 2 241 -21 805 230 76 101 chr12 130585239 130585651 -13200804 + MER66A LTR ERV1 99 468 -10 298 300 13 66 chr12 130587033 130587192 -13199263 - MIR SINE MIR -61 147 41 400 248 51 0 chr12 130588578 130588695 -13197760 + MER3 DNA MER1_type 21 143 -66 215 271 17 17 chr12 130588895 130588954 -13197501 - L2 LINE L2 -20 3293 3235 1256 261 84 11 chr12 130591219 130591660 -13194795 + L1MC2 LINE L1 5859 6331 -13 4332 130 124 29 chr12 130592848 130594120 -13192335 - pTR5 LTR ERV1 0 2438 743 2793 180 184 31 chr12 130594223 130594821 -13191634 + L1MA7 LINE L1 4982 5488 -803 1891 118 25 0 chr12 130594821 130595126 -13191329 + AluSx SINE Alu 1 312 0 2793 180 184 31 chr12 130595126 130595496 -13190959 + L1MA7 LINE L1 5488 6279 -12 2062 120 0 10 chr12 130596804 130597105 -13189350 - AluSx SINE Alu -14 298 1 1951 100 3 28 chr12 130597197 130597550 -13188905 - AluSp SINE Alu 0 346 1 1906 117 39 0 chr12 130598308 130598590 -13187865 + AluSx SINE Alu 1 293 -19 5053 184 25 83 chr12 130598895 130599158 -13187297 + L1MA4 LINE L1 3536 3813 -2333 4011 106 25 28 chr12 130599158 130599278 -13187177 - LTR43 LTR ERV1 0 602 483 1956 79 79 0 chr12 130599278 130599543 -13186912 + AluSp SINE Alu 1 286 -27 4011 106 25 28 chr12 130599543 130600026 -13186429 - LTR43 LTR ERV1 -119 483 1 5053 184 25 83 chr12 130600026 130600561 -13185894 + L1MA4 LINE L1 3813 4378 -1768 996 162 49 34 chr12 130600561 130600765 -13185690 - AluJb SINE Alu -22 290 84 5053 184 25 83 chr12 130600765 130601292 -13185163 + L1MA4 LINE L1 4378 4934 -1212 2209 108 0 10 chr12 130601292 130601598 -13184857 - AluSx SINE Alu -9 303 1 5053 184 25 83 chr12 130601598 130601771 -13184684 + L1MA4 LINE L1 4934 5115 -1031 1662 170 3 10 chr12 130601771 130602060 -13184395 - AluJb SINE Alu -24 288 2 5053 184 25 83 chr12 130602060 130602246 -13184209 + L1MA4 LINE L1 5115 5195 -951 3139 154 15 4 chr12 130602246 130602727 -13183728 - MER66B LTR ERV1 0 486 1 5053 184 25 83 chr12 130602727 130602900 -13183555 + L1MA4 LINE L1 5195 5376 -770 1136 176 9 5 chr12 130602902 130603112 -13183343 + AluJb SINE Alu 1 211 -101 1262 173 56 0 chr12 130603112 130603343 -13183112 + L1MA4 LINE L1 5768 6011 -289 987 164 6 6 chr12 130603415 130603580 -13182875 + FRAM SINE Alu 1 165 -1 2262 100 3 0 chr12 130603584 130603895 -13182560 + AluSx SINE Alu 1 312 0 235 197 42 0 chr12 130603947 130604018 -13182437 - L1 LINE L1 -3274 2872 2799 2086 113 0 10 chr12 130604438 130604740 -13181715 + AluSx SINE Alu 1 299 -13 357 312 98 33 chr12 130604750 130605087 -13181368 + HAL1b LINE L1 280 638 -710 2073 129 7 0 chr12 130605403 130605713 -13180742 + AluSx SINE Alu 1 312 0 3189 196 18 35 chr12 130605963 130606010 -13180445 + L1M1 LINE L1 9 55 -7510 2366 67 7 0 chr12 130606010 130606309 -13180146 + AluY SINE Alu 1 301 -10 3189 196 18 35 chr12 130606309 130606923 -13179532 + L1M1 LINE L1 55 659 -6906 676 171 86 14 chr12 130606896 130607036 -13179419 + L1M1 LINE L1 220 369 -7196 * 475 195 23 0 chr12 130607019 130607106 -13179349 + L1M1 LINE L1 882 970 -6595 * 8104 148 58 23 chr12 130607661 130609034 -13177421 + L1M1 LINE L1 963 2384 -5181 1535 134 3 123 chr12 130609034 130609171 -13177284 + AluSx SINE Alu 1 74 -228 1960 139 7 0 chr12 130609171 130609473 -13176982 + AluSx SINE Alu 1 304 -8 1535 134 3 123 chr12 130609473 130609677 -13176778 + AluSx SINE Alu 74 301 -1 667 134 143 0 chr12 130610032 130610144 -13176311 + FLAM_A SINE Alu 1 128 -5 192 276 0 17 chr12 130610153 130610211 -13176244 + MIR SINE MIR 96 152 -110 353 320 19 0 chr12 130610635 130610738 -13175717 - MIR SINE MIR -79 129 25 949 155 19 0 chr12 130611216 130611371 -13175084 + FRAM SINE Alu 1 157 -19 252 86 0 0 chr12 130611372 130611407 -13175048 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 1665 129 4 0 chr12 130611408 130611649 -13174806 + AluJb SINE Alu 1 242 -70 507 219 130 0 chr12 130611688 130611834 -13174621 - MIR SINE MIR -12 250 86 227 267 17 17 chr12 130611900 130611960 -13174495 - MIR SINE MIR -59 149 90 * 618 217 13 70 chr12 130611949 130612062 -13174393 + L2 LINE L2 2922 3025 -288 2315 70 3 7 chr12 130612062 130612364 -13174091 + AluY SINE Alu 1 301 -10 618 217 13 70 chr12 130612364 130612407 -13174048 + L2 LINE L2 3025 3069 -244 1142 136 0 0 chr12 130612413 130612589 -13173866 + AluSg/x SINE Alu 137 312 0 1752 195 55 16 chr12 130612609 130612994 -13173461 + L1MB5 LINE L1 5285 5684 -496 946 105 8 0 chr12 130613007 130613140 -13173315 - AluSq/x SINE Alu -179 134 1 2324 164 45 16 chr12 130613140 130613586 -13172869 + L1MB5 LINE L1 5673 6131 -43 811 126 0 0 chr12 130613591 130613702 -13172753 - FLAM_C SINE Alu -26 117 7 329 136 0 0 chr12 130613707 130613766 -13172689 + L1MB5 LINE L1 6115 6173 -1 484 284 118 24 chr12 130613771 130613982 -13172473 + L2 LINE L2 3083 3313 0 183 100 0 0 chr12 130614441 130614471 -13171984 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 336 147 0 107 chr12 130614483 130614558 -13171897 - L2 LINE L2 0 3313 3247 749 187 133 54 chr12 130614592 130614623 -13171832 - MER20 DNA MER1_type 0 219 192 2081 149 0 13 chr12 130614623 130614939 -13171516 - AluJo SINE Alu 0 312 1 749 187 133 54 chr12 130614939 130615110 -13171345 - MER20 DNA MER1_type -27 192 1 639 286 18 6 chr12 130615289 130615457 -13170998 - MIR SINE MIR -66 196 27 1301 174 4 17 chr12 130615485 130615720 -13170735 + AluJo SINE Alu 81 312 0 223 260 26 52 chr12 130615749 130615826 -13170629 + L2 LINE L2 3197 3271 -1 192 182 0 0 chr12 130615924 130615968 -13170487 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 2430 103 0 0 chr12 130616039 130616349 -13170106 + AluSx SINE Alu 1 310 -2 1255 297 115 0 chr12 130616464 130616891 -13169564 - MLT1K LTR MaLR 0 476 1 606 267 103 53 chr12 130617553 130617733 -13168722 + MLT1J LTR MaLR 64 262 -249 2008 124 0 11 chr12 130617733 130618015 -13168440 - AluSx SINE Alu -1 311 33 606 267 103 53 chr12 130618015 130618096 -13168359 + MLT1J LTR MaLR 262 338 -173 895 152 0 0 chr12 130618099 130618224 -13168231 + AluJo/FLAM SINE Alu 1 125 -187 * 1272 150 33 28 chr12 130618223 130618436 -13168019 - AluJo SINE Alu -98 214 1 2301 112 0 0 chr12 130618626 130618920 -13167535 + AluSg1 SINE Alu 1 294 -15 33 43 0 0 chr12 130618987 130619034 -13167421 + AT_rich Low_complexity Low_complexity 1 47 0 207 0 0 0 chr12 130619344 130619367 -13167088 + (GA)n Simple_repeat Simple_repeat 2 24 0 2120 154 7 0 chr12 130620191 130620497 -13165958 - AluSq SINE Alu -5 308 1 23 0 0 0 chr12 130620499 130620522 -13165933 + AT_rich Low_complexity Low_complexity 1 23 0 1191 195 4 8 chr12 130620699 130620961 -13165494 + L1MB3 LINE L1 5572 5832 -351 1737 148 82 0 chr12 130620961 130621231 -13165224 + AluJb SINE Alu 1 292 -20 492 32 0 0 chr12 130621244 130621306 -13165149 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 449 204 282 0 chr12 130621687 130621738 -13164717 - MLT1L LTR MaLR -18 597 562 261 0 0 0 chr12 130621738 130621767 -13164688 + (GA)n Simple_repeat Simple_repeat 2 30 0 449 204 282 0 chr12 130621767 130621857 -13164598 - MLT1L LTR MaLR -53 562 416 411 186 0 0 chr12 130621904 130622001 -13164454 + CT-rich Low_complexity Low_complexity 3 99 0 1517 164 68 4 chr12 130622001 130622264 -13164191 - AluJo SINE Alu -32 280 1 373 278 145 57 chr12 130622269 130622470 -13163985 - MLT1L LTR MaLR -345 270 41 1660 117 25 42 chr12 130622470 130622799 -13163656 - AluJo SINE Alu 0 328 5 373 278 145 57 chr12 130622799 130622844 -13163611 - MLT1L LTR MaLR -574 41 1 690 324 156 14 chr12 130623034 130623669 -13162786 + L2 LINE L2 310 1034 -2280 497 325 22 1 chr12 130623888 130624095 -13162360 + MLT1L LTR MaLR 375 612 -3 229 345 35 0 chr12 130624105 130624192 -13162263 + L2 LINE L2 1098 1187 -2127 580 195 30 6 chr12 130624986 130625155 -13161300 + CT-rich Low_complexity Low_complexity 2 174 0 1475 180 59 21 chr12 130625229 130625551 -13160904 - AluJb SINE Alu 0 343 11 723 233 78 10 chr12 130625631 130625824 -13160631 + MER3 DNA MER1_type 2 207 -2 2314 110 0 7 chr12 130625993 130626302 -13160153 + AluSg SINE Alu 1 307 -3 1417 108 0 0 chr12 130627039 130627225 -13159230 - AluSg/x SINE Alu -1 311 126 1935 180 0 3 chr12 130627701 130628007 -13158448 - AluJb SINE Alu -7 305 1 258 302 108 36 chr12 130628295 130628434 -13158021 + L2 LINE L2 2639 2787 -527 506 146 95 183 chr12 130628458 130628568 -13157887 - LTR16C LTR ERVL -42 449 331 2130 91 0 0 chr12 130628568 130628842 -13157613 + AluSx SINE Alu 1 274 -38 506 146 95 183 chr12 130628842 130629005 -13157450 - LTR16C LTR ERVL -160 331 200 314 123 18 0 chr12 130629036 130629093 -13157362 + CT-rich Low_complexity Low_complexity 1 58 0 634 253 23 17 chr12 130629708 130629882 -13156573 + MLT1I LTR MaLR 227 401 -8 1969 145 0 7 chr12 130629968 130630257 -13156198 + AluJo SINE Alu 5 291 -21 21 0 0 0 chr12 130630257 130630278 -13156177 + AT_rich Low_complexity Low_complexity 1 21 0 374 346 28 49 chr12 130630278 130630564 -13155891 - L2 LINE L2 -1230 2084 1805 1892 154 14 0 chr12 130630608 130631020 -13155435 + AluSx SINE Alu 1 416 0 1235 143 0 5 chr12 130631059 130631276 -13155179 - L1MB7 LINE L1 -235 5949 5734 336 276 10 20 chr12 130631346 130631444 -13155011 - MIR SINE MIR -165 97 1 771 222 111 0 chr12 130631474 130631663 -13154792 - LTR33 LTR ERVL 0 521 312 3164 172 81 3 chr12 130631804 130632425 -13154030 + LTR65 LTR ERV1 1 669 0 3512 159 38 56 chr12 130633717 130634046 -13152409 - L1MB8 LINE L1 -13 6165 5832 936 132 0 0 chr12 130634046 130634175 -13152280 - FLAM_C SINE Alu -3 130 2 3512 159 38 56 chr12 130634175 130634532 -13151923 - L1MB8 LINE L1 -346 5832 5492 2333 115 0 0 chr12 130634532 130634844 -13151611 - AluSx SINE Alu 0 312 1 3512 159 38 56 chr12 130634844 130634927 -13151528 - L1MB8 LINE L1 -686 5492 5409 353 313 175 0 chr12 130635034 130635194 -13151261 + MIR SINE MIR 75 262 0 2317 86 3 0 chr12 130635213 130635503 -13150952 + AluSg SINE Alu 3 293 -17 24 67 0 0 chr12 130635506 130635551 -13150904 + AT_rich Low_complexity Low_complexity 1 45 0 485 241 135 0 chr12 130635647 130635788 -13150667 + MIR SINE MIR 103 262 0 2418 103 0 3 chr12 130635873 130636183 -13150272 + AluSx SINE Alu 1 309 -3 297 0 0 0 chr12 130636183 130636216 -13150239 + (TA)n Simple_repeat Simple_repeat 1 33 0 259 137 27 0 chr12 130636250 130636323 -13150132 + (TA)n Simple_repeat Simple_repeat 2 76 0 1814 172 3 16 chr12 130636492 130636795 -13149660 - AluJb SINE Alu -13 299 1 2123 141 3 6 chr12 130636809 130637122 -13149333 - AluJb SINE Alu 0 312 1 1126 267 83 69 chr12 130638247 130638812 -13147643 - MLT1K LTR MaLR 0 588 16 2072 144 0 0 chr12 130639116 130639415 -13147040 - AluSq SINE Alu -14 299 1 270 283 0 0 chr12 130639423 130639483 -13146972 - L2 LINE L2 -533 2781 2722 2157 134 10 0 chr12 130639907 130640205 -13146250 - AluSx SINE Alu -11 301 1 774 275 260 8 chr12 130640371 130640840 -13145615 - L2 LINE L2 -356 2958 2372 487 188 0 51 chr12 130640860 130640977 -13145478 + AluJb SINE Alu 202 312 0 2122 109 7 4 chr12 130640978 130641254 -13145201 + AluSx SINE Alu 1 277 -35 228 35 0 0 chr12 130641254 130641283 -13145172 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 308 307 0 11 chr12 130641876 130641964 -13144491 - MIR SINE MIR -19 243 157 342 303 46 0 chr12 130641984 130642136 -13144319 + LTR67 LTR ERVL 35 193 -364 318 286 9 27 chr12 130642197 130642309 -13144146 + MER115 DNA AcHobo 2 111 -582 1339 223 66 3 chr12 130642361 130642693 -13143762 - MLT1E2 LTR MaLR -129 497 145 716 170 0 0 chr12 130642702 130642814 -13143641 - AluJb SINE Alu -199 113 2 431 144 39 67 chr12 130642833 130642979 -13143476 - MLT1D LTR MaLR -163 227 105 2119 121 28 3 chr12 130642980 130643269 -13143186 + AluSx SINE Alu 1 296 -16 1943 128 3 46 chr12 130643272 130643578 -13142877 + AluSx SINE Alu 1 293 -19 1179 130 0 0 chr12 130643578 130643739 -13142716 + AluJb SINE Alu 134 294 -18 2277 95 3 7 chr12 130643741 130644036 -13142419 + AluSx SINE Alu 1 294 -18 1024 211 8 40 chr12 130644046 130644297 -13142158 - L1MB7 LINE L1 -11 6173 5931 240 183 33 17 chr12 130644300 130644360 -13142095 + LTR67 LTR ERVL 495 555 -2 2068 130 0 0 chr12 130644395 130644671 -13141784 - AluSx SINE Alu -36 276 1 473 276 81 0 chr12 130644672 130644795 -13141660 - MIR SINE MIR -111 151 19 1601 315 72 35 chr12 130644804 130645669 -13140786 - L2 LINE L2 -630 2684 1775 2358 107 0 3 chr12 130645669 130645979 -13140476 - AluSg SINE Alu -1 309 1 1601 315 72 35 chr12 130645979 130646133 -13140322 - L2 LINE L2 -1539 1775 1628 439 302 178 11 chr12 130646186 130646461 -13139994 - L3 LINE CR1 -154 1423 1103 2191 102 26 0 chr12 130646461 130646764 -13139691 - AluSx SINE Alu -1 311 1 1499 233 9 14 chr12 130646990 130647338 -13139117 + L1M4 LINE L1 4051 4396 -1750 549 204 27 165 chr12 130647338 130647598 -13138857 + MIR SINE MIR 18 241 -21 2154 98 10 14 chr12 130647767 130648086 -13138369 - AluSx SINE Alu 0 312 1 2061 145 0 0 chr12 130648362 130648688 -13137767 - AluSx SINE Alu 0 326 1 641 202 0 0 chr12 130648719 130648848 -13137607 + MLT1D LTR MaLR 377 505 0 2410 111 30 25 chr12 130649495 130649857 -13136598 - THE1B LTR MaLR 0 364 1 755 181 0 8 chr12 130649912 130650039 -13136416 - FLAM_A SINE Alu -4 129 4 2273 120 0 0 chr12 130650800 130651100 -13135355 + AluSx SINE Alu 1 300 -12 950 175 17 34 chr12 130651252 130651419 -13135036 + FAM SINE Alu 1 166 -145 1954 102 98 0 chr12 130651419 130651694 -13134761 - AluSx SINE Alu -10 302 1 1915 123 20 7 chr12 130651785 130652085 -13134370 - L1MB5 LINE L1 0 6174 5871 419 120 67 13 chr12 130652085 130652149 -13134306 + AluSg/x SINE Alu 135 205 -105 1847 144 0 4 chr12 130652190 130652454 -13134001 - AluSx SINE Alu -49 263 1 1100 176 0 0 chr12 130652499 130652669 -13133786 - AluJb SINE Alu -9 303 134 2175 124 7 0 chr12 130652669 130652991 -13133464 - AluSq SINE Alu 0 313 1 523 264 50 27 chr12 130652994 130653214 -13133241 - L1MB5 LINE L1 -367 5803 5579 491 264 92 18 chr12 130653243 130653406 -13133049 + MER5B DNA MER1_type 4 178 0 2193 135 0 0 chr12 130653569 130653872 -13132583 + AluSx SINE Alu 1 303 -9 318 245 160 0 chr12 130653897 130653991 -13132464 + MIR SINE MIR 140 248 -14 1785 162 0 32 chr12 130654004 130654312 -13132143 + AluJo SINE Alu 1 298 -14 1267 113 0 0 chr12 130654317 130654477 -13131978 + AluSp SINE Alu 137 296 -17 462 287 163 24 chr12 130654715 130654924 -13131531 - MIR SINE MIR -21 241 4 237 33 0 0 chr12 130655966 130655996 -13130459 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 393 290 73 8 chr12 130656645 130656803 -13129652 - MIR SINE MIR -51 211 33 972 129 0 0 chr12 130657045 130657177 -13129278 + FLAM_C SINE Alu 1 132 -1 817 263 48 16 chr12 130657847 130658098 -13128357 + MIR SINE MIR 3 261 -1 809 275 114 33 chr12 130658347 130658856 -13127599 - MLT1H1 LTR MaLR 0 555 6 181 196 109 0 chr12 130659029 130659075 -13127380 - L2 LINE L2 0 3313 3263 412 240 211 49 chr12 130659223 130659310 -13127145 - MIR SINE MIR -10 252 180 2392 113 0 0 chr12 130659310 130659620 -13126835 + AluSg SINE Alu 1 310 0 412 240 211 49 chr12 130659620 130659736 -13126719 - MIR SINE MIR -82 180 16 813 95 0 32 chr12 130660137 130660263 -13126192 - L1MB7 LINE L1 -18 6166 6045 259 45 68 0 chr12 130660264 130660308 -13126147 + CT-rich Low_complexity Low_complexity 1 47 0 2264 118 3 9 chr12 130660308 130660623 -13125832 - AluSq SINE Alu 0 313 1 1971 168 24 3 chr12 130660625 130661001 -13125454 - L1MB7 LINE L1 -125 6059 5676 254 165 25 38 chr12 130661531 130661610 -13124845 + T-rich Low_complexity Low_complexity 3 80 0 1998 141 10 0 chr12 130661687 130661978 -13124477 + AluSx SINE Alu 4 297 -15 300 264 36 27 chr12 130663054 130663164 -13123291 + GA-rich Low_complexity Low_complexity 3 113 0 798 223 0 6 chr12 130663295 130663467 -13122988 + MIR SINE MIR 38 207 -55 438 20 0 0 chr12 130663501 130663552 -13122903 + (CA)n Simple_repeat Simple_repeat 2 52 0 648 161 9 0 chr12 130663583 130663695 -13122760 + MER3 DNA MER1_type 1 113 -96 832 36 18 0 chr12 130663711 130663823 -13122632 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 802 120 0 0 chr12 130663823 130663931 -13122524 - FLAM_C SINE Alu -35 108 1 453 62 0 16 chr12 130663936 130664000 -13122455 + MER3 DNA MER1_type 147 209 0 335 120 0 0 chr12 130663957 130664007 -13122448 - MER3 DNA MER1_type -119 90 41 * 199 227 182 0 chr12 130664371 130664437 -13122018 + MIR3 SINE MIR 86 163 -45 1728 132 195 38 chr12 130664639 130664672 -13121783 - MSTA LTR MaLR 0 428 402 2420 93 0 3 chr12 130664672 130664983 -13121472 + AluSx SINE Alu 1 310 -2 1728 132 195 38 chr12 130664983 130665319 -13121136 - MSTA LTR MaLR -26 402 1 2024 206 83 39 chr12 130665633 130666152 -13120303 - MLT1F LTR MaLR 0 542 1 233 284 23 11 chr12 130666463 130666551 -13119904 - MIR SINE MIR -11 251 163 896 215 147 54 chr12 130666565 130666933 -13119522 - MLT1D LTR MaLR 0 505 104 2390 81 0 32 chr12 130666933 130667243 -13119212 + AluSq SINE Alu 1 300 -13 1115 109 6 6 chr12 130667976 130668132 -13118323 - AluSg/x SINE Alu -2 308 153 316 286 62 18 chr12 130668141 130668253 -13118202 - L1ME4a LINE L1 -28 6093 5977 2014 147 19 3 chr12 130668435 130668742 -13117713 - AluSx SINE Alu 0 312 1 560 278 59 0 chr12 130668929 130669098 -13117357 - L1ME4a LINE L1 -341 5780 5602 1915 160 3 10 chr12 130669140 130669440 -13117015 - AluJo SINE Alu -14 298 1 1907 134 0 21 chr12 130669797 130670080 -13116375 + AluJb SINE Alu 1 277 -35 578 188 0 123 chr12 130670081 130670251 -13116204 + MER102b DNA MER1_type 193 341 0 2115 117 7 13 chr12 130670666 130670974 -13115481 + AluSx SINE Alu 1 306 -6 822 246 62 16 chr12 130671258 130671514 -13114941 - MLT1C LTR MaLR 0 467 200 710 172 0 0 chr12 130671528 130671644 -13114811 - AluSp/q SINE Alu -4 309 194 576 169 54 82 chr12 130671646 130671830 -13114625 - MLT1C LTR MaLR -284 183 5 374 296 15 84 chr12 130671863 130672024 -13114431 + MER5A DNA MER1_type 1 147 -42 2626 62 0 0 chr12 130672024 130672333 -13114122 - AluY SINE Alu -2 309 1 374 296 15 84 chr12 130672333 130672374 -13114081 + MER5A DNA MER1_type 147 189 0 1925 151 3 38 chr12 130672522 130672841 -13113614 + AluSx SINE Alu 3 310 -2 2672 42 0 0 chr12 130673206 130673512 -13112943 - AluY SINE Alu -5 306 1 1367 85 17 0 chr12 130673512 130673689 -13112766 - AluSp SINE Alu -21 292 113 817 263 48 16 chr12 130674121 130674372 -13112083 + MIR SINE MIR 3 261 -1 809 275 114 33 chr12 130674621 130675130 -13111325 - MLT1H1 LTR MaLR 0 555 6 181 196 109 0 chr12 130675303 130675349 -13111106 - L2 LINE L2 0 3313 3263 283 143 186 0 chr12 130675497 130675567 -13110888 - MIR SINE MIR -10 252 170 2191 111 0 10 chr12 130675584 130675882 -13110573 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 130676046 130676067 -13110388 + AT_rich Low_complexity Low_complexity 1 21 0 2004 144 3 3 chr12 130677139 130677438 -13109017 + AluJb SINE Alu 1 299 -13 2736 168 24 24 chr12 130677569 130677776 -13108679 - L1MB7 LINE L1 -17 6167 5961 234 0 0 0 chr12 130677776 130677802 -13108653 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2268 82 3 3 chr12 130677802 130678084 -13108371 - AluSp SINE Alu -31 282 1 2736 168 24 24 chr12 130678084 130678382 -13108073 - L1MB7 LINE L1 -221 5963 5661 262 213 100 12 chr12 130678384 130678464 -13107991 - MER50 LTR ERV1 -130 604 518 2192 101 19 23 chr12 130678505 130678813 -13107642 - AluSx SINE Alu -5 307 1 1723 159 35 64 chr12 130678815 130679531 -13106924 - L1MB7 LINE L1 -510 5674 4981 2140 147 10 0 chr12 130679541 130679848 -13106607 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 130679848 130679872 -13106583 + AT_rich Low_complexity Low_complexity 1 24 0 1306 95 0 34 chr12 130679872 130680051 -13106404 - AluJb SINE Alu -139 173 1 1919 174 0 3 chr12 130680051 130680349 -13106106 - AluJo SINE Alu -15 297 1 2243 106 10 3 chr12 130680623 130680926 -13105529 - AluSp SINE Alu -6 307 3 2035 110 19 32 chr12 130680928 130681236 -13105219 - AluSx SINE Alu -8 304 1 290 292 67 0 chr12 130681339 130681428 -13105027 + L2 LINE L2 3200 3294 -19 546 326 53 40 chr12 130682276 130682651 -13103804 - L2 LINE L2 -181 3091 2722 2310 114 3 0 chr12 130682651 130682958 -13103497 - AluSq SINE Alu -5 308 1 2032 134 0 3 chr12 130682961 130683281 -13103174 - AluSp SINE Alu 0 319 1 546 326 53 40 chr12 130683281 130683351 -13103104 - L2 LINE L2 -551 2721 2641 192 77 0 0 chr12 130683461 130683487 -13102968 + (A)n Simple_repeat Simple_repeat 1 26 0 2459 172 76 14 chr12 130683660 130684149 -13102306 + LTR53 LTR ERVL 1 519 0 2491 89 3 3 chr12 130684159 130684472 -13101983 + AluSq SINE Alu 1 313 0 191 364 23 11 chr12 130684501 130684589 -13101866 - MIR SINE MIR -158 104 16 724 127 0 32 chr12 130684990 130685116 -13101339 - L1MB7 LINE L1 -18 6166 6045 259 45 68 0 chr12 130685117 130685161 -13101294 + CT-rich Low_complexity Low_complexity 1 47 0 2264 118 3 9 chr12 130685161 130685476 -13100979 - AluSq SINE Alu 0 313 1 1957 170 24 3 chr12 130685478 130685854 -13100601 - L1MB7 LINE L1 -125 6059 5676 473 47 16 0 chr12 130686691 130686755 -13099700 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 846 115 9 0 chr12 130686759 130686872 -13099583 - FLAM_C SINE Alu -18 115 2 2095 116 3 10 chr12 130687279 130687582 -13098873 - AluSp SINE Alu -12 301 1 783 183 15 0 chr12 130687733 130687864 -13098591 - FLAM_A SINE Alu 0 133 1 2361 103 3 3 chr12 130687882 130688192 -13098263 - AluSx SINE Alu -2 310 1 1162 139 0 0 chr12 130688200 130688366 -13098089 - AluSg/x SINE Alu -12 298 133 541 170 211 20 chr12 130688423 130688570 -13097885 - MER4C LTR ERV1 0 465 291 2338 66 23 3 chr12 130688657 130688962 -13097493 - AluY SINE Alu 0 311 1 2065 93 3 71 chr12 130688962 130689329 -13097126 - MER4A LTR ERV1 -322 342 1 2459 71 3 0 chr12 130689709 130690003 -13096452 - AluSp SINE Alu -17 296 2 251 102 0 0 chr12 130690036 130690085 -13096370 + AluSp/q SINE Alu 253 301 -2 229 67 0 22 chr12 130690103 130690148 -13096307 + Alu SINE Alu 259 302 -1 238 120 0 0 chr12 130690226 130690276 -13096179 + Alu SINE Alu 253 302 -1 250 118 0 0 chr12 130690290 130690341 -13096114 + AluSp/q SINE Alu 253 303 0 823 278 28 24 chr12 130690433 130690681 -13095774 - MIR SINE MIR -5 257 9 2402 96 0 3 chr12 130690989 130691302 -13095153 + AluSx SINE Alu 1 312 0 697 198 0 0 chr12 130691323 130691439 -13095016 + FLAM_C SINE Alu 2 117 -26 25 31 0 0 chr12 130691442 130691474 -13094981 + AT_rich Low_complexity Low_complexity 1 32 0 2243 109 7 3 chr12 130691476 130691778 -13094677 + AluSx SINE Alu 1 303 -9 545 129 168 30 chr12 130692258 130692359 -13094096 + FLAM_A SINE Alu 20 134 -8 2331 110 0 0 chr12 130692360 130692670 -13093785 + AluSg SINE Alu 1 310 0 198 0 0 0 chr12 130692828 130692850 -13093605 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 231 152 0 0 chr12 130693375 130693421 -13093034 + (TTAGGG)n Simple_repeat Simple_repeat 3 48 0 1919 141 7 0 chr12 130693455 130693739 -13092716 + AluSx SINE Alu 1 286 -26 535 149 0 11 chr12 130693781 130693868 -13092587 + AluY SINE Alu 191 276 -35 22 56 0 0 chr12 130693902 130693938 -13092517 + AT_rich Low_complexity Low_complexity 1 36 0 1930 149 0 24 chr12 130694491 130694780 -13091675 + AluJb SINE Alu 17 298 -14 383 258 238 32 chr12 130694782 130695030 -13091425 + L1ME LINE L1 5309 5607 -514 2043 164 18 13 chr12 130695037 130695052 -13091403 - L1MB4 LINE L1 -218 5962 5949 2075 140 3 6 chr12 130695052 130695366 -13091089 - AluSq SINE Alu 0 313 1 2043 164 18 13 chr12 130695366 130695735 -13090720 - L1MB4 LINE L1 -231 5949 5576 277 143 71 0 chr12 130695741 130695797 -13090658 - L1MB4 LINE L1 -2375 5433 5374 1546 120 0 0 chr12 130696157 130696365 -13090090 - AluSc SINE Alu -21 288 81 2388 83 7 10 chr12 130697943 130698244 -13088211 + AluSx SINE Alu 1 300 -12 2282 98 0 0 chr12 130698244 130698554 -13087901 + AluSx SINE Alu 1 311 0 29 28 0 0 chr12 130699681 130699717 -13086738 + GC_rich Low_complexity Low_complexity 1 36 0 1339 152 51 70 chr12 130699822 130700137 -13086318 + AluJo SINE Alu 3 311 -1 2435 87 10 0 chr12 130700689 130700999 -13085456 - AluSq SINE Alu 0 313 1 242 281 208 10 chr12 130701041 130701137 -13085318 - L2 LINE L2 -15 3298 3184 1744 163 3 33 chr12 130701589 130701896 -13084559 - AluJo SINE Alu -14 298 1 318 245 160 0 chr12 130701909 130702003 -13084452 - MIR SINE MIR -14 248 140 2146 142 0 0 chr12 130702028 130702331 -13084124 - AluSx SINE Alu -8 304 2 1012 178 6 6 chr12 130702377 130702546 -13083909 - AluJb SINE Alu -10 302 134 2190 120 7 0 chr12 130702546 130702868 -13083587 - AluSq SINE Alu 0 313 1 523 264 50 27 chr12 130702871 130703091 -13083364 - L1ME LINE L1 -367 5803 5579 505 272 95 19 chr12 130703120 130703278 -13083177 + MER5B DNA MER1_type 4 173 -5 2170 84 52 3 chr12 130704324 130704611 -13081844 - AluSx SINE Alu -5 307 7 212 186 373 0 chr12 130704748 130704807 -13081648 - MER5B DNA MER1_type 0 178 98 724 89 20 0 chr12 130704810 130704911 -13081544 - AluSg/x SINE Alu -16 296 194 3133 201 33 34 chr12 130705031 130705850 -13080605 - L1ME LINE L1 -743 5403 4586 1842 135 3 14 chr12 130706799 130707096 -13079359 - AluJo SINE Alu -18 294 1 23 54 0 0 chr12 130707130 130707167 -13079288 + GC_rich Low_complexity Low_complexity 1 37 0 22 42 0 0 chr12 130707264 130707288 -13079167 + GC_rich Low_complexity Low_complexity 1 24 0 189 210 0 81 chr12 130710955 130711017 -13075438 + L2 LINE L2 3143 3199 -73 2375 75 10 3 chr12 130711775 130712067 -13074388 + AluSg1 SINE Alu 1 294 -15 1169 177 50 35 chr12 130712251 130712343 -13074112 - MLT1A1 LTR MaLR -21 353 264 1790 137 53 3 chr12 130712343 130712627 -13073828 + AluJb SINE Alu 1 298 -14 1169 177 50 35 chr12 130712627 130712690 -13073765 - MLT1A1 LTR MaLR -110 264 203 2099 97 31 28 chr12 130712690 130712980 -13073475 - AluSc SINE Alu -18 291 1 1169 177 50 35 chr12 130712980 130713136 -13073319 - MLT1A1 LTR MaLR -171 203 1 2445 92 3 0 chr12 130714061 130714364 -13072091 - AluSg SINE Alu -6 304 1 2148 165 79 11 chr12 130714407 130714876 -13071579 + L1MB7 LINE L1 5685 6178 0 2133 125 0 0 chr12 130717335 130717644 -13068811 - AluSx SINE Alu 0 309 1 675 240 136 35 chr12 130717710 130717997 -13068458 - MER74B LTR ERVL -114 508 193 618 240 16 0 chr12 130718046 130718167 -13068288 + FRAM SINE Alu 31 153 -23 2353 107 7 0 chr12 130718197 130718506 -13067949 - AluSx SINE Alu -1 311 1 924 158 13 25 chr12 130718515 130718673 -13067782 + AluJo SINE Alu 121 276 -36 180 0 0 0 chr12 130718678 130718698 -13067757 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 276 208 0 0 chr12 130718720 130718773 -13067682 - MER74B LTR ERVL -569 53 1 2060 153 0 3 chr12 130719187 130719488 -13066967 + AluJb SINE Alu 2 301 -11 1077 261 97 84 chr12 130719920 130720389 -13066066 - MLT1K LTR MaLR -23 565 87 378 0 0 0 chr12 130720389 130720431 -13066024 + (CA)n Simple_repeat Simple_repeat 2 43 0 1077 261 97 84 chr12 130720431 130720509 -13065946 - MLT1K LTR MaLR -501 87 11 2376 93 0 3 chr12 130720631 130720933 -13065522 + AluSg SINE Alu 1 301 -9 432 0 0 0 chr12 130721848 130721896 -13064559 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2067 139 0 0 chr12 130721898 130722179 -13064276 - AluSx SINE Alu -31 281 1 187 376 9 9 chr12 130722380 130722489 -13063966 - MIR SINE MIR -70 138 30 1843 151 7 23 chr12 130722658 130722962 -13063493 + AluJo SINE Alu 1 299 -13 637 188 127 38 chr12 130722963 130723037 -13063418 + L1M4c LINE L1 2264 2330 -4054 2257 124 0 0 chr12 130723037 130723336 -13063119 + AluSx SINE Alu 4 302 -10 637 188 127 38 chr12 130723336 130723474 -13062981 + L1M4c LINE L1 2330 2495 -3889 1027 174 5 16 chr12 130723474 130723658 -13062797 + AluJo SINE Alu 118 299 -13 21 0 0 0 chr12 130723840 130723861 -13062594 + GC_rich Low_complexity Low_complexity 1 21 0 2315 90 10 0 chr12 130724331 130724630 -13061825 + AluSp SINE Alu 2 303 -10 464 255 102 13 chr12 130724959 130725116 -13061339 - L1ME3A LINE L1 -10 6160 5990 2398 92 7 10 chr12 130725143 130725446 -13061009 + AluSx SINE Alu 1 302 -10 319 138 175 50 chr12 130725446 130725520 -13060935 - AluJo/FLAM SINE Alu -173 129 46 1318 231 142 30 chr12 130725536 130725974 -13060481 - L1ME3A LINE L1 -170 6000 5514 275 111 148 0 chr12 130725982 130726036 -13060419 - MLT1D LTR MaLR -4 501 440 2379 94 0 7 chr12 130726036 130726344 -13060111 + AluY SINE Alu 1 306 -5 1061 186 14 5 chr12 130726349 130726569 -13059886 + L1MB5 LINE L1 5666 5887 -287 1885 129 43 4 chr12 130726688 130726968 -13059487 + AluJo SINE Alu 1 291 -21 424 165 188 12 chr12 130726977 130727147 -13059308 - Charlie5 DNA MER1_type -42 2570 2371 2139 115 0 16 chr12 130727149 130727453 -13059002 + AluSc SINE Alu 1 299 -10 264 272 33 54 chr12 130727630 130727722 -13058733 + MIR3 SINE MIR 88 177 -31 2071 147 3 13 chr12 130727726 130728040 -13058415 - AluJb SINE Alu -1 311 1 434 294 112 51 chr12 130728041 130728187 -13058268 + L1M4c LINE L1 2917 3053 -3329 2333 111 0 3 chr12 130728187 130728494 -13057961 - AluSx SINE Alu -1 311 6 434 294 112 51 chr12 130728494 130728643 -13057812 + L1M4c LINE L1 3053 3230 -3152 831 106 0 0 chr12 130728643 130728793 -13057662 - AluY SINE Alu 0 346 197 381 58 0 0 chr12 130728793 130728845 -13057610 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1916 139 7 0 chr12 130728845 130729126 -13057329 - AluSx SINE Alu -29 283 1 231 152 0 0 chr12 130729160 130729206 -13057249 + (CCCTAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr12 130729731 130729753 -13056702 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2346 107 0 0 chr12 130729911 130730221 -13056234 - AluSg SINE Alu 0 310 1 545 129 168 30 chr12 130730222 130730323 -13056132 - FLAM_A SINE Alu -8 134 20 2221 119 7 3 chr12 130730803 130731105 -13055350 - AluSx SINE Alu -9 303 1 1949 132 32 4 chr12 130731113 130731394 -13055061 - AluJo SINE Alu -23 289 1 563 185 28 0 chr12 130731710 130731818 -13054637 - MER81 DNA DNA -1 113 3 1990 108 0 59 chr12 130731894 130732199 -13054256 - AluY SINE Alu -2 309 23 1094 117 61 0 chr12 130732201 130732364 -13054091 - AluSc SINE Alu -3 306 134 379 306 31 21 chr12 130732469 130732615 -13053840 + L1MC4a LINE L1 5811 5956 -206 252 324 0 0 chr12 130732636 130732704 -13053751 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 2410 96 0 3 chr12 130732891 130733194 -13053261 + AluSp SINE Alu 1 302 -11 2367 87 10 0 chr12 130733542 130733842 -13052613 + AluSp SINE Alu 2 304 -9 480 248 102 13 chr12 130734170 130734327 -13052128 - L1ME3A LINE L1 -10 6160 5990 2398 92 7 10 chr12 130734354 130734657 -13051798 + AluSx SINE Alu 1 302 -10 319 138 175 50 chr12 130734657 130734731 -13051724 - AluJo/FLAM SINE Alu -173 129 46 1318 231 142 30 chr12 130734747 130735185 -13051270 - L1ME3A LINE L1 -170 6000 5514 275 111 148 0 chr12 130735193 130735247 -13051208 - MLT1D LTR MaLR -4 501 440 1786 109 0 4 chr12 130735247 130735486 -13050969 + AluSq SINE Alu 1 238 -75 1967 126 4 0 chr12 130735486 130735755 -13050700 + AluSx SINE Alu 32 301 -11 692 234 60 12 chr12 130735758 130736006 -13050449 - L1ME3A LINE L1 -2229 3917 3658 3592 114 93 26 chr12 130736017 130736573 -13049882 - Tigger3(Golem) DNA MER2_type 0 3028 2420 2449 72 0 0 chr12 130736573 130736864 -13049591 + AluY SINE Alu 3 293 -18 3592 114 93 26 chr12 130736864 130736962 -13049493 - Tigger3(Golem) DNA MER2_type -608 2420 2330 2395 109 0 0 chr12 130736963 130737266 -13049189 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr12 130737267 130737288 -13049167 + (CA)n Simple_repeat Simple_repeat 2 22 0 314 250 161 32 chr12 130737294 130737418 -13049037 - L2 LINE L2 -164 3149 3010 2067 151 0 7 chr12 130737455 130737754 -13048701 + AluSx SINE Alu 1 297 -15 222 364 74 0 chr12 130737754 130737875 -13048580 + MIR SINE MIR 132 261 -1 2005 133 10 0 chr12 130738476 130738769 -13047686 + AluSx SINE Alu 1 296 -16 294 318 116 11 chr12 130738951 130739107 -13047348 + MIR SINE MIR 25 206 -56 1008 219 126 66 chr12 130739215 130739447 -13047008 + MLT1G LTR MaLR 1 218 -337 2227 121 7 0 chr12 130739447 130739754 -13046701 + AluSx SINE Alu 1 309 -3 1008 219 126 66 chr12 130739754 130740028 -13046427 + MLT1G LTR MaLR 218 555 0 2313 94 0 0 chr12 130740263 130740574 -13045881 + AluSx SINE Alu 1 311 0 546 326 53 40 chr12 130741937 130742312 -13044143 - L2 LINE L2 -181 3091 2722 2310 114 3 0 chr12 130742312 130742619 -13043836 - AluSq SINE Alu -5 308 1 2032 134 0 3 chr12 130742622 130742942 -13043513 - AluSp SINE Alu 0 319 1 546 326 53 40 chr12 130742942 130743012 -13043443 - L2 LINE L2 -551 2721 2641 222 91 0 0 chr12 130743122 130743155 -13043300 + (A)n Simple_repeat Simple_repeat 1 33 0 2440 174 76 14 chr12 130743323 130743812 -13042643 + LTR53 LTR ERVL 1 519 0 2465 71 3 3 chr12 130743822 130744117 -13042338 + AluSq SINE Alu 1 295 -18 277 234 13 78 chr12 130744797 130744861 -13041594 + MIR SINE MIR 26 86 -176 2295 84 21 70 chr12 130744861 130745244 -13041211 + THE1B LTR MaLR 1 364 0 277 234 13 78 chr12 130745244 130745256 -13041199 + MIR SINE MIR 86 97 -165 347 328 39 47 chr12 130745302 130745558 -13040897 + L2 LINE L2 2251 2504 -810 * 561 279 132 59 chr12 130745555 130745923 -13040532 - L2 LINE L2 0 3313 2907 418 235 147 20 chr12 130745923 130746054 -13040401 + FLAM_A SINE Alu 1 144 0 561 279 132 59 chr12 130746054 130746106 -13040349 - L2 LINE L2 -406 2907 2860 2341 99 0 0 chr12 130746487 130746791 -13039664 + AluY SINE Alu 1 304 -7 852 170 0 0 chr12 130746986 130747127 -13039328 - FLAM_C SINE Alu -2 141 1 245 200 0 0 chr12 130747158 130747203 -13039252 + L1ME LINE L1 5747 5791 -330 294 410 0 0 chr12 130747455 130747616 -13038839 + G-rich Low_complexity Low_complexity 1 161 0 1252 204 4 12 chr12 130747841 130748091 -13038364 + AluSx SINE Alu 51 298 -14 222 364 74 0 chr12 130748091 130748212 -13038243 + MIR SINE MIR 132 261 -1 1967 143 3 0 chr12 130748813 130749106 -13037349 + AluSx SINE Alu 1 294 -18 294 318 116 11 chr12 130749288 130749444 -13037011 + MIR SINE MIR 25 206 -56 586 195 91 50 chr12 130749563 130749784 -13036671 + MLT1G LTR MaLR 15 244 -346 2108 127 7 0 chr12 130749784 130750076 -13036379 + AluSx SINE Alu 1 294 -18 2402 96 0 3 chr12 130751106 130751419 -13035036 + AluSx SINE Alu 1 312 0 697 198 0 0 chr12 130751440 130751556 -13034899 + FLAM_C SINE Alu 2 117 -26 189 0 0 0 chr12 130751556 130751577 -13034878 + (T)n Simple_repeat Simple_repeat 1 21 0 2525 81 3 0 chr12 130751594 130751902 -13034553 + AluSp SINE Alu 1 309 -4 399 230 10 0 chr12 130752360 130752460 -13033995 + L1M4 LINE L1 5207 5307 -839 2162 108 3 10 chr12 130752460 130752757 -13033698 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 130752921 130752942 -13033513 + AT_rich Low_complexity Low_complexity 1 21 0 2004 144 3 3 chr12 130754014 130754313 -13032142 + AluJb SINE Alu 1 299 -13 2721 170 24 24 chr12 130754444 130754651 -13031804 - L1MB7 LINE L1 -17 6167 5961 189 0 0 0 chr12 130754651 130754672 -13031783 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2349 75 4 0 chr12 130754672 130754953 -13031502 - AluSp SINE Alu -31 282 1 2721 170 24 24 chr12 130754953 130755251 -13031204 - L1MB7 LINE L1 -221 5963 5661 262 213 100 12 chr12 130755253 130755333 -13031122 - MER50 LTR ERV1 -130 604 518 2192 101 19 23 chr12 130755372 130755680 -13030775 - AluSx SINE Alu -5 307 1 1704 161 35 64 chr12 130755682 130756398 -13030057 - L1MB7 LINE L1 -510 5674 4981 2140 147 10 0 chr12 130756408 130756715 -13029740 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 130756715 130756739 -13029716 + AT_rich Low_complexity Low_complexity 1 24 0 1306 95 0 34 chr12 130756739 130756918 -13029537 - AluJb SINE Alu -139 173 1 1919 174 0 3 chr12 130756918 130757216 -13029239 - AluJo SINE Alu -15 297 1 2272 102 10 3 chr12 130757490 130757793 -13028662 - AluSp SINE Alu -6 307 3 2035 110 19 32 chr12 130757795 130758103 -13028352 - AluSx SINE Alu -8 304 1 405 278 56 0 chr12 130758207 130758315 -13028140 + L2 LINE L2 3200 3313 0 260 282 194 10 chr12 130758742 130758845 -13027610 + L2 LINE L2 3192 3313 0 2435 87 10 0 chr12 130758873 130759183 -13027272 + AluSq SINE Alu 1 313 0 1594 125 53 53 chr12 130759735 130760038 -13026417 - AluJo SINE Alu -9 303 1 22 56 0 0 chr12 130760143 130760179 -13026276 + GC_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr12 130760447 130760472 -13025983 + GC_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr12 130760568 130760604 -13025851 + GC_rich Low_complexity Low_complexity 1 36 0 1842 135 3 14 chr12 130760638 130760935 -13025520 + AluJo SINE Alu 1 294 -18 2144 87 52 3 chr12 130761337 130761623 -13024832 - AluSq SINE Alu -7 306 7 349 255 189 26 chr12 130761759 130761821 -13024634 - MER5B DNA MER1_type 0 178 127 2345 79 7 0 chr12 130761821 130762113 -13024342 - AluSx SINE Alu -16 296 3 349 255 189 26 chr12 130762113 130762203 -13024252 - MER5B DNA MER1_type -51 127 1 867 134 0 0 chr12 130762448 130762567 -13023888 + FLAM_C SINE Alu 13 131 -12 21 36 0 0 chr12 130762602 130762630 -13023825 + AT_rich Low_complexity Low_complexity 1 28 0 2455 77 0 10 chr12 130762630 130762928 -13023527 + AluSq SINE Alu 3 297 -16 404 209 85 0 chr12 130762935 130763064 -13023391 - L1M4 LINE L1 -985 5161 5022 276 30 0 0 chr12 130763320 130763353 -13023102 + (TA)n Simple_repeat Simple_repeat 1 33 0 1018 164 73 60 chr12 130763548 130763672 -13022783 + MER33 DNA MER1_type 2 123 -2462 1864 165 10 3 chr12 130763672 130763963 -13022492 + AluJo SINE Alu 1 293 -19 1018 164 73 60 chr12 130763963 130764053 -13022402 + MER33 DNA MER1_type 123 210 -2375 1402 167 46 100 chr12 130764053 130764382 -13022073 - AluJb SINE Alu -1 311 1 1018 164 73 60 chr12 130764382 130764447 -13022008 + MER33 DNA MER1_type 210 289 -2296 1952 143 0 7 chr12 130764447 130764734 -13021721 + AluJb SINE Alu 9 293 -19 1018 164 73 60 chr12 130764734 130764769 -13021686 + MER33 DNA MER1_type 289 322 -2 1674 109 13 13 chr12 130765303 130765542 -13020913 - AluSq SINE Alu -9 304 66 282 315 87 0 chr12 130765639 130765731 -13020724 + MER63 DNA MER1_type 11 736 -100 748 254 62 14 chr12 130765741 130765950 -13020505 - MIR SINE MIR -37 225 7 1002 121 21 0 chr12 130765964 130766104 -13020351 - AluJb SINE Alu -8 304 162 941 121 57 0 chr12 130766220 130766360 -13020095 - AluJb SINE Alu -164 148 1 1392 98 26 51 chr12 130766512 130766746 -13019709 + MER30 DNA MER1_type 2 229 -1 1194 174 24 36 chr12 130766748 130767001 -13019454 + MIR SINE MIR 3 252 -10 2486 83 3 0 chr12 130767060 130767362 -13019093 + AluSq SINE Alu 1 303 -10 532 306 27 6 chr12 130767373 130767556 -13018899 - MIR SINE MIR 0 262 76 997 140 0 0 chr12 130768165 130768308 -13018147 + FLAM_C SINE Alu 1 143 0 2298 87 7 0 chr12 130768727 130769013 -13017442 + AluSc SINE Alu 1 288 -21 2188 146 3 0 chr12 130769399 130769708 -13016747 + AluSx SINE Alu 1 310 -2 2271 86 0 4 chr12 130770198 130770476 -13015979 + AluSx SINE Alu 21 297 -15 719 110 0 0 chr12 130770480 130770589 -13015866 - L1MA2 LINE L1 0 6304 6196 3204 139 12 24 chr12 130770757 130771334 -13015121 + L1MB5 LINE L1 5596 6165 -9 301 259 35 0 chr12 130771339 130771424 -13015031 - AluSg/x SINE Alu -11 291 204 1301 143 0 5 chr12 130771526 130771715 -13014740 + AluSg/x SINE Alu 106 293 -19 249 86 0 0 chr12 130771715 130771750 -13014705 + MER33 DNA MER1_type 327 361 -2 1666 113 13 13 chr12 130772284 130772523 -13013932 - AluSq SINE Alu -9 304 66 282 315 87 0 chr12 130772620 130772712 -13013743 + MER63 DNA MER1_type 11 736 -326 672 251 62 24 chr12 130772722 130772933 -13013522 - MIR SINE MIR -37 225 7 912 131 23 0 chr12 130772947 130773077 -13013378 - AluJb SINE Alu -18 294 162 941 121 57 0 chr12 130773193 130773333 -13013122 - AluJb SINE Alu -164 148 1 1419 102 17 51 chr12 130773485 130773721 -13012734 + MER30 DNA MER1_type 2 229 -1 1194 174 24 36 chr12 130773723 130773976 -13012479 + MIR SINE MIR 3 252 -10 2486 83 3 0 chr12 130774035 130774337 -13012118 + AluSq SINE Alu 1 303 -10 532 306 27 6 chr12 130774348 130774531 -13011924 - MIR SINE MIR 0 262 76 997 140 0 0 chr12 130775140 130775283 -13011172 + FLAM_C SINE Alu 1 143 0 2298 87 7 0 chr12 130775702 130775988 -13010467 + AluSc SINE Alu 1 288 -21 909 219 0 0 chr12 130776375 130776539 -13009916 + FRAM SINE Alu 1 164 -12 806 137 8 15 chr12 130776946 130777063 -13009392 + FLAM_C SINE Alu 2 119 -183 515 56 14 0 chr12 130777063 130777134 -13009321 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 806 137 8 15 chr12 130777134 130777147 -13009308 + FLAM_C SINE Alu 119 131 -171 202 114 23 23 chr12 130777169 130777213 -13009242 + A-rich Low_complexity Low_complexity 3 46 0 359 84 61 38 chr12 130777219 130777350 -13009105 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 2198 143 0 0 chr12 130777806 130778114 -13008341 + AluSx SINE Alu 1 308 -4 2049 170 68 45 chr12 130778114 130778418 -13008037 - L1MB5 LINE L1 -36 6138 5843 1964 134 38 0 chr12 130778418 130778593 -13007862 - AluSx SINE Alu -7 305 113 405 39 0 0 chr12 130778593 130778644 -13007811 + (TG)n Simple_repeat Simple_repeat 2 52 0 1964 134 38 0 chr12 130778644 130778760 -13007695 - AluSx SINE Alu -199 113 3 2049 170 68 45 chr12 130778760 130778843 -13007612 - L1MB5 LINE L1 -331 5843 5763 2385 71 10 3 chr12 130778843 130779137 -13007318 - AluSg SINE Alu -14 296 1 2049 170 68 45 chr12 130779137 130779219 -13007236 - L1MB5 LINE L1 -411 5763 5657 186 71 0 0 chr12 130779807 130779835 -13006620 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2415 106 3 0 chr12 130779847 130780158 -13006297 - AluSx SINE Alu 0 312 1 2108 129 3 7 chr12 130780519 130780822 -13005633 - AluSq SINE Alu -11 302 1 559 102 23 0 chr12 130781222 130781310 -13005145 + AluSg/x SINE Alu 179 268 -44 256 59 0 0 chr12 130781310 130781344 -13005111 + Alu SINE Alu 240 273 -29 702 286 24 5 chr12 130781525 130781731 -13004724 - MLT1K LTR MaLR -372 216 7 2190 113 10 10 chr12 130781771 130782081 -13004374 + AluSx SINE Alu 3 312 0 710 185 109 86 chr12 130782404 130782519 -13003936 + MER33 DNA MER1_type 1 112 -2473 2445 86 0 3 chr12 130782519 130782820 -13003635 - AluSx SINE Alu -12 300 1 710 185 109 86 chr12 130782820 130782832 -13003623 + MER33 DNA MER1_type 112 122 -2463 2294 71 0 3 chr12 130782832 130783157 -13003298 - AluY SINE Alu 0 324 1 710 185 109 86 chr12 130783157 130783329 -13003126 + MER33 DNA MER1_type 122 309 -15 1898 129 43 4 chr12 130783338 130783618 -13002837 - AluJo SINE Alu -21 291 1 1693 111 18 0 chr12 130783754 130783980 -13002475 - AluSx SINE Alu -82 230 1 2211 101 0 0 chr12 130784306 130784584 -13001871 + AluSq SINE Alu 21 298 -15 556 244 65 24 chr12 130784811 130784889 -13001566 - MER45A DNA AcHobo -1403 178 105 2208 118 3 3 chr12 130784889 130785193 -13001262 + AluSx SINE Alu 1 304 -8 556 244 65 24 chr12 130785193 130785282 -13001173 - MER45A DNA AcHobo -1476 105 4 2516 86 0 0 chr12 130785642 130785946 -13000509 - AluSg SINE Alu -6 304 1 512 302 25 0 chr12 130786078 130786237 -13000218 - MIR SINE MIR -40 222 60 322 315 139 14 chr12 130786314 130786530 -12999925 - MIR SINE MIR 0 262 20 2343 89 3 9 chr12 130786652 130786967 -12999488 - AluSp SINE Alu 0 313 1 731 183 15 0 chr12 130787121 130787252 -12999203 - FLAM_A SINE Alu 0 133 1 2379 103 3 3 chr12 130787270 130787581 -12998874 - AluSx SINE Alu -1 311 1 1168 139 0 0 chr12 130787589 130787755 -12998700 - AluSg/x SINE Alu -12 298 133 549 170 211 20 chr12 130787812 130787959 -12998496 - MER4C LTR ERV1 0 465 291 2423 50 26 3 chr12 130788044 130788346 -12998109 - AluY SINE Alu -2 309 1 2077 93 3 71 chr12 130788346 130788713 -12997742 - MER4A LTR ERV1 -322 342 1 2330 99 3 0 chr12 130789093 130789387 -12997068 - AluSp SINE Alu -16 297 3 493 172 147 98 chr12 130789390 130789470 -12996985 - L1MB5 LINE L1 -347 5827 5752 2415 68 10 3 chr12 130789470 130789764 -12996691 - AluSg SINE Alu -14 296 1 493 172 147 98 chr12 130789764 130789846 -12996609 - L1MB5 LINE L1 -422 5752 5657 186 71 0 0 chr12 130790434 130790462 -12995993 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2415 106 3 0 chr12 130790474 130790785 -12995670 - AluSx SINE Alu 0 312 1 2108 129 3 7 chr12 130791146 130791449 -12995006 - AluSq SINE Alu -11 302 1 559 102 23 0 chr12 130791849 130791937 -12994518 + AluSg/x SINE Alu 177 266 -44 256 59 0 0 chr12 130791937 130791971 -12994484 + Alu SINE Alu 240 273 -29 702 286 24 5 chr12 130792152 130792358 -12994097 - MLT1K LTR MaLR -372 216 7 2190 113 10 10 chr12 130792398 130792708 -12993747 + AluSx SINE Alu 3 312 0 370 202 12 12 chr12 130793031 130793115 -12993340 + MER33 DNA MER1_type 1 84 -240 2445 86 0 3 chr12 130793146 130793447 -12993008 - AluSx SINE Alu -12 300 1 1810 98 106 0 chr12 130793459 130793757 -12992698 - AluSx SINE Alu 0 325 1 419 141 59 12 chr12 130793827 130793847 -12992608 + AluSp SINE Alu 119 137 -176 1811 123 20 7 chr12 130793847 130794147 -12992308 - L1MB5 LINE L1 0 6174 5871 419 141 59 12 chr12 130794147 130794211 -12992244 + AluSp SINE Alu 137 207 -106 633 229 6 13 chr12 130794252 130794409 -12992046 - AluSg/x SINE Alu -49 263 108 2187 135 3 0 chr12 130794905 130795208 -12991247 + AluSx SINE Alu 1 304 -8 782 97 0 0 chr12 130795209 130795323 -12991132 + L1MB5 LINE L1 6055 6168 -6 2141 100 24 14 chr12 130795475 130795766 -12990689 + AluSx SINE Alu 3 296 -16 1542 194 10 31 chr12 130796450 130796743 -12989712 + AluJo SINE Alu 1 287 -25 1667 109 123 43 chr12 130796751 130797027 -12989428 + AluSx SINE Alu 1 298 -14 232 207 85 0 chr12 130797028 130797110 -12989345 - L1MC4 LINE L1 -1339 6703 6615 1443 232 85 28 chr12 130798232 130798667 -12987788 - MLT1C LTR MaLR -7 460 1 1913 109 83 11 chr12 130798759 130799035 -12987420 + AluSx SINE Alu 1 296 -16 308 236 56 0 chr12 130799552 130799624 -12986831 - L1MC3 LINE L1 -1139 6646 6571 2161 115 7 10 chr12 130799627 130799932 -12986523 - AluSx SINE Alu -8 304 1 1679 206 89 2 chr12 130799937 130800340 -12986115 - L1MB7 LINE L1 0 6184 5747 189 0 0 0 chr12 130800352 130800373 -12986082 + (TTG)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr12 130800405 130800427 -12986028 + AT_rich Low_complexity Low_complexity 1 22 0 1814 93 0 8 chr12 130800432 130800669 -12985786 + AluSc SINE Alu 66 300 -9 2333 109 0 13 chr12 130802898 130803209 -12983246 - AluSx SINE Alu -5 307 1 837 159 8 8 chr12 130803220 130803352 -12983103 - AluJb SINE Alu -45 267 136 2270 113 3 0 chr12 130803639 130803939 -12982516 - AluSx SINE Alu -11 301 1 1509 234 8 14 chr12 130804167 130804521 -12981934 + L1M4 LINE L1 4051 4402 -1744 488 202 28 166 chr12 130804528 130804775 -12981680 + MIR SINE MIR 29 241 -21 2168 100 10 13 chr12 130804944 130805266 -12981189 - AluSx SINE Alu 0 312 1 2070 145 0 0 chr12 130805542 130805868 -12980587 - AluSx SINE Alu 0 326 1 650 202 0 0 chr12 130805899 130806028 -12980427 + MLT1D LTR MaLR 377 505 0 1242 110 59 55 chr12 130806675 130806894 -12979561 - THE1B LTR MaLR 0 364 145 2333 109 0 13 chr12 130808228 130808539 -12977916 - AluSx SINE Alu -5 307 1 837 159 8 8 chr12 130808550 130808682 -12977773 - AluJb SINE Alu -45 267 136 2364 101 3 0 chr12 130808969 130809267 -12977188 - AluSg SINE Alu -11 299 1 1674 172 26 0 chr12 130809513 130809780 -12976675 + AluJb SINE Alu 21 294 -18 1031 185 59 115 chr12 130809830 130810220 -12976235 + MLT1A2 LTR MaLR 1 368 -6 852 162 7 15 chr12 130810391 130810527 -12975928 + AluJo SINE Alu 1 135 -177 1527 201 7 43 chr12 130810527 130810831 -12975624 + AluJb SINE Alu 1 293 -19 203 262 71 71 chr12 130810860 130810944 -12975511 + MIR SINE MIR 89 172 -90 192 291 0 0 chr12 130811053 130811108 -12975347 - MER5A DNA MER1_type 0 189 135 1984 142 3 38 chr12 130811126 130811442 -12975013 - AluJo SINE Alu -7 305 1 279 254 0 0 chr12 130811445 130811504 -12974951 - MER5A DNA MER1_type -117 72 14 2262 109 0 34 chr12 130816029 130816350 -12970105 + AluSx SINE Alu 1 310 -2 2695 42 0 0 chr12 130816711 130817018 -12969437 - AluY SINE Alu -4 307 1 2329 90 10 0 chr12 130817018 130817307 -12969148 - AluSq SINE Alu -21 292 1 2230 163 78 11 chr12 130817344 130817817 -12968638 + L1MB7 LINE L1 5680 6184 0 1753 196 124 2 chr12 130819778 130820223 -12966232 + L1MB5 LINE L1 5676 6174 0 2170 116 0 0 chr12 130820243 130820544 -12965911 + AluSq SINE Alu 4 304 -9 268 286 19 48 chr12 130821266 130821371 -12965084 + L2 LINE L2 3171 3272 0 1109 259 91 10 chr12 130824411 130824794 -12961661 + L2 LINE L2 2900 3313 0 234 308 154 24 chr12 130824793 130824962 -12961493 - MIR SINE MIR -58 204 14 * 225 250 11 34 chr12 130825274 130825362 -12961093 + L1MC5 LINE L1 7832 7917 -44 2138 110 3 22 chr12 130825516 130825834 -12960621 + AluSx SINE Alu 1 312 0 422 345 6 12 chr12 130825903 130826068 -12960387 + MER117 DNA MER1_type 6 169 -28 2132 118 0 3 chr12 130826240 130826545 -12959910 - AluSq SINE Alu -9 304 1 1016 255 102 11 chr12 130826765 130827224 -12959231 + MLT1K LTR MaLR 69 588 0 2043 107 17 0 chr12 130828164 130828455 -12958000 + AluSx SINE Alu 1 296 -16 281 240 58 76 chr12 130828527 130828698 -12957757 - MIR SINE MIR -88 174 7 2410 96 70 23 chr12 130828816 130829202 -12957253 + MLT2A1 LTR ERVL 1 404 -40 205 178 0 0 chr12 130829202 130829247 -12957208 + (TA)n Simple_repeat Simple_repeat 1 45 0 286 65 0 43 chr12 130829255 130829301 -12957154 + MLT2A1 LTR ERVL 399 442 -11 2007 116 7 7 chr12 130829965 130830257 -12956198 + AluSx SINE Alu 1 292 -20 3558 133 12 24 chr12 130830262 130830839 -12955616 - L1MB5 LINE L1 -9 6165 5596 776 110 0 0 chr12 130831008 130831117 -12955338 + L1MA2 LINE L1 6196 6304 0 2129 90 0 4 chr12 130831121 130831399 -12955056 - AluSx SINE Alu -15 297 21 2133 133 3 0 chr12 130831886 130832194 -12954261 - AluSx SINE Alu -3 309 1 1092 126 6 0 chr12 130832206 130832365 -12954090 - FRAM SINE Alu -15 161 2 290 227 18 64 chr12 130832652 130832713 -12953742 + L2 LINE L2 2717 2772 -542 2094 108 10 0 chr12 130832713 130833008 -12953447 - AluSx SINE Alu -11 301 4 290 227 18 64 chr12 130833008 130833056 -12953399 + L2 LINE L2 2772 2821 -493 381 220 37 0 chr12 130833430 130833539 -12952916 + MER113 DNA MER1_type? 7 119 -402 191 241 92 23 chr12 130833635 130833706 -12952749 + L2 LINE L2 3221 3300 -13 1467 178 4 4 chr12 130833706 130833964 -12952491 + AluJb SINE Alu 37 294 -18 191 241 92 23 chr12 130833964 130833979 -12952476 + L2 LINE L2 3300 3313 0 2123 103 7 7 chr12 130834544 130834845 -12951610 + AluSx SINE Alu 1 301 -11 244 315 65 46 chr12 130834994 130835102 -12951353 + L2 LINE L2 3162 3271 -1 251 316 101 13 chr12 130835598 130835756 -12950699 + L2 LINE L2 2924 3095 -177 995 241 106 10 chr12 130835800 130836103 -12950352 + Charlie1b DNA MER1_type 1 332 -191 1677 121 0 0 chr12 130836104 130836344 -12950111 + AluY SINE Alu 1 240 -71 1821 149 3 3 chr12 130836444 130836733 -12949722 - AluJb SINE Alu -23 289 1 353 198 54 0 chr12 130836733 130836844 -12949611 + Charlie1b DNA MER1_type 357 473 -50 1319 87 0 16 chr12 130836847 130837032 -12949423 - AluSq SINE Alu -18 295 114 228 108 0 0 chr12 130837035 130837072 -12949383 + Charlie1b DNA MER1_type 487 523 0 281 224 0 0 chr12 130837080 130837129 -12949326 + MER58A DNA MER1_type 1 49 -175 180 0 0 0 chr12 130837129 130837149 -12949306 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 878 142 0 0 chr12 130837149 130837276 -12949179 - AluSq SINE Alu -183 129 3 480 157 12 0 chr12 130837277 130837360 -12949095 + MER58A DNA MER1_type 46 129 0 230 261 0 0 chr12 130837419 130837465 -12948990 + MIR SINE MIR 107 152 -110 223 227 18 22 chr12 130838126 130838201 -12948254 + MIR SINE MIR 92 143 -65 1751 154 10 22 chr12 130838224 130838362 -12948093 + AluJb SINE Alu 1 139 -173 2246 71 0 7 chr12 130838362 130838697 -12947758 + AluY SINE Alu 1 311 0 1751 154 10 22 chr12 130838697 130838870 -12947585 + AluJb SINE Alu 139 308 -4 1214 195 32 35 chr12 130839307 130839463 -12946992 + MLT1A1 LTR MaLR 1 156 -240 1994 96 31 27 chr12 130839463 130839755 -12946700 + AluSc SINE Alu 1 293 -16 1214 195 32 35 chr12 130839755 130839816 -12946639 + MLT1A1 LTR MaLR 156 216 -180 1688 137 53 3 chr12 130839816 130840100 -12946355 - AluJb SINE Alu -14 298 1 1214 195 32 35 chr12 130840100 130840192 -12946263 + MLT1A1 LTR MaLR 216 374 -22 2239 75 10 3 chr12 130840376 130840668 -12945787 - AluSg1 SINE Alu -15 294 1 270 0 0 0 chr12 130840899 130840929 -12945526 + (T)n Simple_repeat Simple_repeat 1 30 0 1917 131 0 25 chr12 130840974 130841288 -12945167 - AluSg SINE Alu -4 306 1 1093 187 20 73 chr12 130841288 130841370 -12945085 - L1MB7 LINE L1 -44 6140 6055 2213 100 0 3 chr12 130841370 130841670 -12944785 - AluSx SINE Alu -13 299 1 1093 187 20 73 chr12 130841670 130841887 -12944568 - L1MB7 LINE L1 -129 6055 5857 583 159 0 0 chr12 130841990 130842078 -12944377 - AluSg1 SINE Alu -220 89 2 270 0 0 0 chr12 130842316 130842346 -12944109 + (T)n Simple_repeat Simple_repeat 1 30 0 2077 118 0 13 chr12 130842390 130842704 -12943751 - AluSg SINE Alu 0 310 1 1557 194 8 59 chr12 130842704 130842786 -12943669 - L1MB7 LINE L1 -44 6140 6055 2213 100 0 3 chr12 130842786 130843086 -12943369 - AluSx SINE Alu -13 299 1 1557 194 8 59 chr12 130843086 130843152 -12943303 - L1MB7 LINE L1 -129 6055 5693 1059 290 8 81 chr12 130843152 130843376 -12943079 - L1MD2 LINE L1 -352 6007 5833 387 0 0 0 chr12 130843376 130843419 -12943036 + (TA)n Simple_repeat Simple_repeat 1 43 0 1059 290 8 81 chr12 130843419 130843666 -12942789 - L1MD2 LINE L1 -526 5833 5570 1103 139 0 0 chr12 130843711 130843876 -12942579 - AluSg/x SINE Alu -10 302 138 181 194 0 0 chr12 130844350 130844381 -12942074 - MIR SINE MIR -64 144 114 274 254 16 103 chr12 130844381 130844507 -12941948 - MIR SINE MIR -119 143 29 187 237 105 53 chr12 130844593 130844669 -12941786 + MIR SINE MIR 69 148 -114 537 273 125 69 chr12 130844937 130845054 -12941401 + MER102b DNA MER1_type 1 110 -1318 1952 134 3 3 chr12 130845054 130845352 -12941103 + AluSx SINE Alu 1 298 -14 537 273 125 69 chr12 130845352 130845379 -12941076 + MER102b DNA MER1_type 110 134 -1294 2065 121 7 0 chr12 130845379 130845676 -12940779 + AluSx SINE Alu 2 300 -12 537 273 125 69 chr12 130845676 130845849 -12940606 + MER102b DNA MER1_type 134 337 -4 1902 130 24 0 chr12 130846288 130846581 -12939874 + AluSq SINE Alu 1 300 -13 577 245 122 0 chr12 130846581 130846777 -12939678 - L1ME3A LINE L1 -55 6115 5896 324 221 94 0 chr12 130846864 130846991 -12939464 + L1ME2 LINE L1 5022 5160 -986 1100 204 19 0 chr12 130847120 130847336 -12939119 - AluJo SINE Alu -92 220 1 1121 180 124 0 chr12 130847337 130847620 -12938835 + L1ME2 LINE L1 5581 5898 -266 1839 135 3 32 chr12 130847776 130848087 -12938368 + AluSx SINE Alu 1 302 -10 930 275 70 54 chr12 130848136 130848651 -12937804 - L2 LINE L2 0 3313 2772 592 200 140 110 chr12 130848875 130849175 -12937280 + LTR16C LTR ERVL 177 485 -6 1021 113 0 38 chr12 130849984 130850143 -12936312 - FRAM SINE Alu 0 40 1 389 273 34 51 chr12 130850207 130850383 -12936072 - Charlie8 DNA MER1_type -2155 262 90 2147 101 7 26 chr12 130850396 130850704 -12935751 + AluSx SINE Alu 1 302 -10 1961 155 22 36 chr12 130850712 130851073 -12935382 + L1MB5 LINE L1 5819 6174 0 2221 118 0 0 chr12 130851074 130851378 -12935077 + AluSg SINE Alu 1 304 -6 2066 110 3 23 chr12 130851378 130851686 -12934769 + AluSx SINE Alu 1 303 -9 1488 115 0 0 chr12 130851880 130852088 -12934367 + AluSc SINE Alu 81 288 -21 278 143 71 0 chr12 130852450 130852506 -12933949 + L1MB4 LINE L1 5374 5433 -2375 2002 158 27 3 chr12 130852512 130852878 -12933577 + L1MB4 LINE L1 5576 5950 -230 2043 135 0 0 chr12 130852878 130853181 -12933274 + AluSx SINE Alu 1 303 -9 2094 117 35 46 chr12 130853637 130854005 -12932450 + THE1B LTR MaLR 1 364 0 8611 30 4 19 chr12 130855320 130856398 -12930057 + MER11C LTR ERVK 10 1071 0 201 74 0 0 chr12 130856711 130856738 -12929717 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 306 298 47 122 chr12 130856775 130856859 -12929596 - L2 LINE L2 -74 3198 3109 2107 106 7 0 chr12 130856859 130857151 -12929304 + AluSx SINE Alu 1 294 -18 306 298 47 122 chr12 130857151 130857475 -12928980 - L2 LINE L2 -163 3109 2821 1818 199 57 37 chr12 130857546 130857936 -12928519 + MLT1C LTR MaLR 1 403 -64 2210 111 7 0 chr12 130857936 130858243 -12928212 - AluSx SINE Alu -3 309 1 1818 199 57 37 chr12 130858243 130858310 -12928145 + MLT1C LTR MaLR 403 467 0 1636 129 26 26 chr12 130858729 130859001 -12927454 + AluJo SINE Alu 9 280 -32 243 0 0 0 chr12 130859003 130859030 -12927425 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 549 266 116 0 chr12 130859033 130859206 -12927249 + Charlie8 DNA MER1_type 84 276 -2141 381 302 7 36 chr12 130859330 130859469 -12926986 - MIR3 SINE MIR -9 199 65 2087 122 6 6 chr12 130859502 130859813 -12926642 - AluSx SINE Alu -1 311 1 272 303 34 0 chr12 130860062 130860151 -12926304 + L2 LINE L2 3206 3297 -16 934 253 106 80 chr12 130860295 130860409 -12926046 + MLT1K LTR MaLR 2 112 -364 2053 127 0 0 chr12 130860409 130860700 -12925755 + AluSx SINE Alu 1 291 -21 934 253 106 80 chr12 130860700 130860715 -12925740 + MLT1K LTR MaLR 112 125 -351 1812 146 3 14 chr12 130860715 130861010 -12925445 + AluJb SINE Alu 1 292 -20 934 253 106 80 chr12 130861010 130861342 -12925113 + MLT1K LTR MaLR 125 476 0 237 241 89 25 chr12 130861633 130861712 -12924743 - MIR SINE MIR -25 237 154 288 53 0 0 chr12 130861712 130861750 -12924705 + (GTTTG)n Simple_repeat Simple_repeat 3 40 0 975 148 0 0 chr12 130861750 130861899 -12924556 - AluJb SINE Alu -30 282 134 391 286 0 0 chr12 130861900 130861991 -12924464 - MIR SINE MIR -101 161 71 1900 140 3 3 chr12 130862109 130862394 -12924061 - AluJo SINE Alu -27 285 1 198 376 9 9 chr12 130862595 130862704 -12923751 - MIR SINE MIR -70 138 30 1493 188 3 35 chr12 130862884 130863198 -12923257 + AluJo SINE Alu 9 312 0 2133 118 0 0 chr12 130864803 130865100 -12921355 + AluSx SINE Alu 5 301 -11 204 280 220 17 chr12 130865177 130865295 -12921160 + MIR SINE MIR 111 252 -10 1680 167 0 7 chr12 130865593 130865880 -12920575 + AluJo SINE Alu 1 285 -27 1961 135 0 10 chr12 130866012 130866309 -12920146 - AluSx SINE Alu -18 294 1 977 200 5 0 chr12 130866438 130866628 -12919827 + AluJo SINE Alu 117 307 -5 2293 97 0 3 chr12 130866628 130866938 -12919517 + AluSq SINE Alu 1 309 -4 215 171 25 139 chr12 130867074 130867169 -12919286 + MIR SINE MIR 85 174 -34 240 185 37 93 chr12 130867343 130867451 -12919004 + L2 LINE L2 2966 3067 -205 477 244 62 107 chr12 130867517 130867558 -12918897 - MER20B DNA MER1_type -4 215 174 2429 90 0 3 chr12 130867558 130867868 -12918587 - AluSx SINE Alu -3 309 1 477 244 62 107 chr12 130867868 130868051 -12918404 - MER20B DNA MER1_type -45 174 1 374 109 156 0 chr12 130868269 130868333 -12918122 + MIR SINE MIR 76 149 -113 549 231 41 14 chr12 130868353 130868500 -12917955 + MIR SINE MIR 110 260 -2 2115 107 28 0 chr12 130868526 130868816 -12917639 + AluSq SINE Alu 1 298 -15 24 0 0 0 chr12 130870211 130870235 -12916220 + GC_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr12 130870316 130870339 -12916116 + (CTCGG)n Simple_repeat Simple_repeat 4 26 0 2463 83 7 0 chr12 130870640 130870941 -12915514 + AluSx SINE Alu 1 303 -9 2088 103 39 0 chr12 130870941 130871222 -12915233 + AluSg SINE Alu 1 292 -18 640 191 131 40 chr12 130872016 130872054 -12914401 + L1M4c LINE L1 2221 2254 -4130 1912 162 0 10 chr12 130872054 130872356 -12914099 + AluJo SINE Alu 1 299 -13 640 191 131 40 chr12 130872356 130872431 -12914024 + L1M4c LINE L1 2254 2321 -4063 2274 123 0 0 chr12 130872431 130872732 -12913723 + AluSx SINE Alu 4 304 -8 640 191 131 40 chr12 130872732 130872869 -12913586 + L1M4c LINE L1 2321 2495 -3889 1073 181 0 16 chr12 130872869 130873062 -12913393 + AluJo SINE Alu 118 307 -5 2288 199 50 37 chr12 130873065 130873327 -12913128 + L1M4c LINE L1 2504 2761 -3621 1622 209 3 7 chr12 130873327 130873633 -12912822 + AluJb SINE Alu 1 305 -7 2288 199 50 37 chr12 130873633 130874052 -12912403 + L1M4c LINE L1 2761 3194 -3188 1291 126 0 40 chr12 130874058 130874257 -12912198 + AluSx SINE Alu 1 191 -121 421 85 68 0 chr12 130874257 130874316 -12912139 + AluY SINE Alu 57 119 -192 292 254 0 0 chr12 130875073 130875132 -12911323 + MER5A DNA MER1_type 14 72 -117 1966 148 0 38 chr12 130875135 130875452 -12911003 + AluJo SINE Alu 1 305 -7 192 152 121 76 chr12 130875459 130875525 -12910930 + MER5A DNA MER1_type 110 189 0 218 262 71 71 chr12 130875634 130875718 -12910737 - MIR SINE MIR -90 172 89 1519 201 7 43 chr12 130875747 130876051 -12910404 - AluJb SINE Alu -19 293 1 847 162 7 15 chr12 130876051 130876187 -12910268 - AluJo SINE Alu -177 135 1 996 187 54 110 chr12 130876358 130876748 -12909707 - MLT1A2 LTR MaLR -6 368 1 1762 164 28 3 chr12 130876798 130877085 -12909370 - AluJb SINE Alu -18 294 1 462 135 11 11 chr12 130877086 130877175 -12909280 - L1M4 LINE L1 -694 5490 5402 353 313 175 0 chr12 130877275 130877435 -12909020 + MIR SINE MIR 75 262 0 2308 90 3 0 chr12 130877454 130877744 -12908711 + AluSg SINE Alu 3 293 -17 24 67 0 0 chr12 130877747 130877792 -12908663 + AT_rich Low_complexity Low_complexity 1 45 0 485 241 135 0 chr12 130877888 130878029 -12908426 + MIR SINE MIR 103 262 0 2126 120 0 17 chr12 130878114 130878414 -12908041 + AluSx SINE Alu 1 295 -17 2424 61 3 3 chr12 130878416 130878709 -12907746 + AluY SINE Alu 1 293 -18 2112 134 0 20 chr12 130878744 130879049 -12907406 + AluSx SINE Alu 1 299 -13 1062 156 0 28 chr12 130879059 130879238 -12907217 + AluJb SINE Alu 135 308 -4 2185 104 0 42 chr12 130879321 130879483 -12906972 - AluSq SINE Alu -19 294 150 2142 105 13 23 chr12 130879483 130879788 -12906667 - AluSc SINE Alu -7 302 1 2185 104 0 42 chr12 130879788 130879932 -12906523 - AluSq SINE Alu -163 150 1 512 267 20 27 chr12 130879962 130880108 -12906347 - MER5B DNA MER1_type -29 149 5 332 217 130 29 chr12 130880146 130880284 -12906171 - L2 LINE L2 -1 3312 3161 2408 82 0 3 chr12 130881119 130881412 -12905043 + AluSg SINE Alu 1 292 -18 219 231 0 19 chr12 130881437 130881489 -12904966 + (TG)n Simple_repeat Simple_repeat 2 52 0 294 29 0 0 chr12 130881489 130881524 -12904931 + (CA)n Simple_repeat Simple_repeat 2 36 0 1892 101 51 0 chr12 130881611 130881868 -12904587 - AluSx SINE Alu -12 300 31 4883 190 45 21 chr12 130883031 130883253 -12903202 - L1MB5 LINE L1 -286 5888 5673 2672 55 0 0 chr12 130883253 130883562 -12902893 - AluY SINE Alu 0 311 3 4883 190 45 21 chr12 130883562 130885087 -12901368 - L1MB5 LINE L1 -501 5673 4095 1617 134 14 47 chr12 130885096 130885373 -12901082 + AluSq SINE Alu 6 273 -40 2059 108 0 11 chr12 130885531 130885861 -12900594 + AluJb SINE Alu 1 327 0 2404 94 3 0 chr12 130885871 130886179 -12900276 + AluSg SINE Alu 1 309 -1 24 32 0 0 chr12 130886877 130886908 -12899547 + GC_rich Low_complexity Low_complexity 1 31 0 50 54 0 0 chr12 130887209 130887265 -12899190 + GC_rich Low_complexity Low_complexity 1 56 0 422 236 17 22 chr12 130887265 130887443 -12899012 + (CCCG)n Simple_repeat Simple_repeat 4 180 0 35 51 0 0 chr12 130887447 130887486 -12898969 + GC_rich Low_complexity Low_complexity 1 39 0 2162 124 10 0 chr12 130887609 130887908 -12898547 - AluSq SINE Alu -11 302 1 1736 180 3 0 chr12 130887952 130888260 -12898195 + AluJo SINE Alu 1 309 0 1831 158 7 7 chr12 130888324 130888622 -12897833 - AluJo SINE Alu -14 298 1 184 213 25 25 chr12 130888650 130888730 -12897725 + CT-rich Low_complexity Low_complexity 2 81 0 225 322 0 0 chr12 130888766 130888825 -12897630 + CT-rich Low_complexity Low_complexity 3 61 0 199 167 48 48 chr12 130888853 130888979 -12897476 + CT-rich Low_complexity Low_complexity 6 131 0 248 205 0 60 chr12 130889079 130889162 -12897293 + CT-rich Low_complexity Low_complexity 1 78 0 3134 147 15 4 chr12 130889461 130889998 -12896457 + L1MB7 LINE L1 5533 6075 -109 407 290 97 0 chr12 130889999 130890154 -12896301 + LTR33A LTR ERVL 52 221 -302 258 253 0 63 chr12 130890252 130890347 -12896108 + CT-rich Low_complexity Low_complexity 1 89 0 * 266 354 0 30 chr12 130890284 130890383 -12896072 + polypyrimidine Low_complexity Low_complexity 2 97 0 1340 187 7 27 chr12 130890619 130890913 -12895542 - L1MB7 LINE L1 -78 6106 5819 2057 90 3 33 chr12 130890913 130891214 -12895241 - AluY SINE Alu -11 300 9 2292 93 0 3 chr12 130892165 130892479 -12893976 - AluSg SINE Alu 0 310 1 27 29 0 0 chr12 130892519 130892553 -12893902 + AT_rich Low_complexity Low_complexity 1 34 0 750 130 0 65 chr12 130892557 130892695 -12893760 - FLAM_C SINE Alu -4 129 1 208 273 114 23 chr12 130892878 130892966 -12893489 - L2 LINE L2 -45 3227 3132 250 232 0 14 chr12 130893290 130893359 -12893096 + L1ME2 LINE L1 6097 6164 0 411 327 35 15 chr12 130893608 130893807 -12892648 - L2 LINE L2 -371 2943 2741 265 293 12 12 chr12 130893999 130894081 -12892374 + CT-rich Low_complexity Low_complexity 1 82 0 5534 123 193 50 chr12 130894408 130895653 -12890802 + pTR5 LTR ERV1 1016 2438 0 1798 154 22 4 chr12 130895884 130896156 -12890299 - AluSx SINE Alu -35 277 1 316 125 0 0 chr12 130896157 130896205 -12890250 - AluJb SINE Alu -167 135 88 1124 192 35 15 chr12 130896207 130896410 -12890045 - AluJo SINE Alu -92 220 14 821 238 0 0 chr12 130896910 130897061 -12889394 - FRAM SINE Alu -14 152 2 1556 186 32 7 chr12 130897217 130897497 -12888958 - AluJb SINE Alu -23 289 3 300 148 0 0 chr12 130897535 130897589 -12888866 - L1MB5 LINE L1 -6 6168 6115 2309 117 0 13 chr12 130897590 130897906 -12888549 + AluSq SINE Alu 1 312 -1 2839 225 52 14 chr12 130897906 130898668 -12887787 + L1M4 LINE L1 3093 3892 -2254 1920 142 3 39 chr12 130898668 130898978 -12887477 + AluSg SINE Alu 1 299 -11 2839 225 52 14 chr12 130898978 130899065 -12887390 + L1M4 LINE L1 3892 3974 -2172 1647 190 0 41 chr12 130899196 130899512 -12886943 + AluJb SINE Alu 1 303 -9 1951 151 0 7 chr12 130899621 130899920 -12886535 - AluJo SINE Alu -15 297 1 2648 20 3 3 chr12 130900002 130900299 -12886156 - AluYa5 SINE Alu -14 297 1 2109 132 3 7 chr12 130900299 130900602 -12885853 - AluSx SINE Alu -10 302 1 652 208 0 16 chr12 130900715 130900874 -12885581 - FLAM_A SINE Alu 0 133 2 1694 169 141 67 chr12 130900934 130901169 -12885286 - MLT1C LTR MaLR -1 466 250 2710 58 0 0 chr12 130901169 130901479 -12884976 - AluSx SINE Alu -2 310 1 1694 169 141 67 chr12 130901479 130901675 -12884780 - MLT1C LTR MaLR -217 250 3 281 190 293 0 chr12 130901762 130901878 -12884577 - LTR33A LTR ERVL -2 521 372 1668 171 0 50 chr12 130901879 130902027 -12884428 + AluJo SINE Alu 1 128 -184 2229 108 7 3 chr12 130902027 130902323 -12884132 + AluSx SINE Alu 1 297 -15 1668 171 0 50 chr12 130902323 130902472 -12883983 + AluJo SINE Alu 128 283 -29 352 98 0 0 chr12 130902472 130902523 -12883932 + (GA)n Simple_repeat Simple_repeat 1 51 0 477 131 0 0 chr12 130902523 130902607 -12883848 + (GAA)n Simple_repeat Simple_repeat 3 86 0 393 297 97 0 chr12 130902711 130902866 -12883589 - LTR33A LTR ERVL -302 221 52 1577 214 34 16 chr12 130902867 130903307 -12883148 - L1MB7 LINE L1 -109 6075 5628 585 124 22 0 chr12 130903413 130903502 -12882953 - AluJ/FLAM SINE Alu -220 92 2 2220 101 3 7 chr12 130903532 130903828 -12882627 + AluSg SINE Alu 1 295 -15 223 338 209 24 chr12 130904280 130904869 -12881586 + L2 LINE L2 1912 2609 -705 186 328 52 83 chr12 130905042 130905234 -12881221 + L2 LINE L2 2874 3059 -213 609 301 26 0 chr12 130905274 130905427 -12881028 + MIR SINE MIR 21 177 -85 754 202 0 0 chr12 130905432 130905561 -12880894 + FLAM_C SINE Alu 5 133 -10 1654 153 10 37 chr12 130905617 130905912 -12880543 + AluJb SINE Alu 1 287 -25 519 119 71 0 chr12 130905914 130905998 -12880457 - AluSc SINE Alu -43 266 177 1062 190 32 28 chr12 130906243 130906476 -12879979 - L1MB7 LINE L1 -743 5403 5167 2209 111 7 0 chr12 130906476 130906774 -12879681 - AluSp SINE Alu -13 300 1 1062 190 32 28 chr12 130906774 130906787 -12879668 - L1MB7 LINE L1 -979 5167 5156 490 265 77 22 chr12 130907028 130907209 -12879246 + MIR3 SINE MIR 5 195 -13 2068 118 14 3 chr12 130907225 130907521 -12878934 - AluSq SINE Alu -14 299 1 571 271 0 0 chr12 130907640 130907773 -12878682 - FLAM_A SINE Alu 0 133 1 697 198 0 0 chr12 130907849 130907970 -12878485 - FLAM_C SINE Alu -12 121 1 458 96 14 0 chr12 130907973 130908046 -12878409 + MSTB1 LTR MaLR 358 431 -1 187 289 121 24 chr12 130908140 130908223 -12878232 + MIR SINE MIR 30 120 -88 207 0 0 0 chr12 130908355 130908378 -12878077 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2225 94 14 0 chr12 130908380 130908666 -12877789 - AluSg1 SINE Alu -19 290 1 2200 125 7 0 chr12 130908666 130908971 -12877484 - AluSx SINE Alu -5 307 1 196 283 0 19 chr12 130909056 130909109 -12877346 - MIR SINE MIR -106 156 105 399 214 18 27 chr12 130909659 130909771 -12876684 + L1MC5 LINE L1 7803 7913 -48 2645 58 0 3 chr12 130909898 130910209 -12876246 - AluY SINE Alu -1 310 1 2333 74 20 10 chr12 130910217 130910514 -12875941 - AluY SINE Alu -11 300 1 1381 200 76 4 chr12 130910575 130910850 -12875605 - AluJb SINE Alu -15 297 3 1634 137 4 0 chr12 130910859 130911085 -12875370 - AluJb SINE Alu -22 290 64 1594 205 126 78 chr12 130911086 130911588 -12874867 - MER51C LTR ERV1 0 640 115 380 182 0 0 chr12 130911594 130911660 -12874795 - AluJb SINE Alu -236 66 1 1707 174 7 14 chr12 130911670 130911957 -12874498 - AluJo SINE Alu -27 285 1 2562 72 0 0 chr12 130912287 130912593 -12873862 + AluY SINE Alu 1 306 -5 2302 89 0 0 chr12 130912839 130913130 -12873325 + AluY SINE Alu 5 295 -16 310 193 176 25 chr12 130913178 130913297 -12873158 + L1ME4a LINE L1 5985 6121 0 1937 158 3 0 chr12 130913824 130914116 -12872339 + AluJb SINE Alu 4 296 -16 2294 106 0 10 chr12 130914382 130914683 -12871772 + AluSp SINE Alu 4 301 -12 1722 172 24 17 chr12 130914890 130915187 -12871268 + AluJb SINE Alu 1 299 -13 2236 110 0 7 chr12 130915290 130915590 -12870865 - AluSg SINE Alu -12 298 1 2294 112 0 3 chr12 130916033 130916329 -12870126 - AluSx SINE Alu -17 295 1 2466 100 0 0 chr12 130916747 130917056 -12869399 - AluSp SINE Alu -4 309 1 1933 130 0 25 chr12 130917058 130917342 -12869113 - AluJb SINE Alu -19 293 17 180 0 0 0 chr12 130918221 130918241 -12868214 + (A)n Simple_repeat Simple_repeat 1 20 0 215 304 78 20 chr12 130918241 130918343 -12868112 - L2 LINE L2 -165 3107 3000 869 143 0 0 chr12 130919022 130919148 -12867307 + AluSq/x SINE Alu 1 126 -186 252 0 0 0 chr12 130919304 130919332 -12867123 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2446 67 0 6 chr12 130919981 130920293 -12866162 + AluY SINE Alu 1 310 -1 1670 128 67 37 chr12 130920875 130921173 -12865282 - AluSx SINE Alu -5 307 1 1809 122 54 14 chr12 130921254 130921550 -12864905 - AluSx SINE Alu -4 308 1 2138 126 0 0 chr12 130922341 130922651 -12863804 - AluSx SINE Alu -2 310 1 2354 68 14 0 chr12 130922660 130922956 -12863499 - AluY SINE Alu -11 300 1 1766 128 7 3 chr12 130923151 130923454 -12863001 - AluSx SINE Alu 0 304 1 902 152 90 17 chr12 130923790 130923968 -12862487 - L1PA16 LINE L1 -9 6157 5967 873 154 0 0 chr12 130924891 130925021 -12861434 + FLAM_C SINE Alu 1 130 -3 2188 113 0 3 chr12 130925026 130925337 -12861118 + AluSq SINE Alu 1 310 -3 2021 115 0 26 chr12 130925842 130926147 -12860308 - AluSx SINE Alu -15 297 1 915 211 0 17 chr12 130926404 130926579 -12859876 + MER5B DNA MER1_type 6 177 -1 2185 84 7 3 chr12 130926741 130927037 -12859418 + AluSp SINE Alu 1 297 -16 2214 77 0 20 chr12 130927130 130927428 -12859027 + AluSg SINE Alu 6 297 -13 1696 152 24 7 chr12 130927803 130928099 -12858356 - AluJo SINE Alu -11 301 1 23 0 0 0 chr12 130928101 130928124 -12858331 + AT_rich Low_complexity Low_complexity 1 23 0 2037 112 0 20 chr12 130928943 130929102 -12857353 - AluSx SINE Alu -22 290 138 2311 80 0 13 chr12 130929102 130929414 -12857041 - AluY SINE Alu -3 308 1 2037 112 0 20 chr12 130929414 130929550 -12856905 - AluSx SINE Alu -174 138 1 2069 86 27 14 chr12 130929596 130929888 -12856567 - AluSg SINE Alu -12 298 3 2011 131 0 3 chr12 130929892 130930198 -12856257 - AluSx SINE Alu -7 305 1 1168 94 6 0 chr12 130930287 130930447 -12856008 - AluSq SINE Alu -16 297 137 2277 70 7 0 chr12 130930447 130930747 -12855708 - AluY SINE Alu -9 302 1 729 170 7 20 chr12 130931537 130931684 -12854771 - AluSg/x SINE Alu -4 308 164 2161 94 0 7 chr12 130931684 130931983 -12854472 + AluSq SINE Alu 1 297 -16 1148 183 3 63 chr12 130932257 130932541 -12853914 - AluSg SINE Alu -43 267 1 2488 148 32 38 chr12 130932545 130932830 -12853625 - L1MB8 LINE L1 -306 5872 5590 2481 31 3 0 chr12 130932830 130933123 -12853332 + AluY SINE Alu 1 294 -17 2488 148 32 38 chr12 130933123 130933342 -12853113 - L1MB8 LINE L1 -588 5590 5371 1711 113 53 3 chr12 130933816 130934099 -12852356 + AluSq SINE Alu 1 297 -16 214 304 78 20 chr12 130936115 130936217 -12850238 - L2 LINE L2 -165 3107 3000 869 143 0 0 chr12 130936896 130937022 -12849433 + AluSq/x SINE Alu 1 126 -186 252 0 0 0 chr12 130937178 130937206 -12849249 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2446 67 0 6 chr12 130937855 130938167 -12848288 + AluY SINE Alu 1 310 -1 1670 128 67 37 chr12 130938749 130939047 -12847408 - AluSx SINE Alu -5 307 1 1856 115 54 14 chr12 130939128 130939424 -12847031 - AluSx SINE Alu -4 308 1 2138 126 0 0 chr12 130940215 130940525 -12845930 - AluSx SINE Alu -2 310 1 2354 68 14 0 chr12 130940534 130940830 -12845625 - AluY SINE Alu -11 300 1 1766 128 7 3 chr12 130941025 130941328 -12845127 - AluSx SINE Alu 0 304 1 902 152 90 17 chr12 130941664 130941842 -12844613 - L1PA16 LINE L1 -9 6157 5967 873 154 0 0 chr12 130942765 130942895 -12843560 + FLAM_C SINE Alu 1 130 -3 2188 113 0 3 chr12 130942900 130943211 -12843244 + AluSq SINE Alu 1 310 -3 1826 141 0 26 chr12 130943716 130944021 -12842434 - AluSx SINE Alu -15 297 1 915 211 0 17 chr12 130944278 130944453 -12842002 + MER5B DNA MER1_type 6 177 -1 2099 121 0 3 chr12 130944615 130944929 -12841526 + AluSq SINE Alu 1 313 0 1606 177 3 40 chr12 130944954 130945276 -12841179 - AluJo SINE Alu -2 310 1 442 317 43 6 chr12 130945355 130945519 -12840936 - MIR SINE MIR -4 258 89 403 267 45 85 chr12 130945635 130945811 -12840644 + MIR SINE MIR 28 196 -66 2035 105 0 3 chr12 130945915 130946229 -12840226 - AluJb SINE Alu 0 313 1 1147 217 95 52 chr12 130946549 130946969 -12839486 + LTR33 LTR ERVL 80 517 -4 210 37 0 0 chr12 130947021 130947048 -12839407 + (TG)n Simple_repeat Simple_repeat 2 28 0 1675 178 0 13 chr12 130947060 130947374 -12839081 - AluJb SINE Alu -2 310 1 2995 122 119 2 chr12 130947594 130948088 -12838367 + L1M1 LINE L1 1833 2384 -5181 1535 134 3 123 chr12 130948088 130948225 -12838230 + AluSx SINE Alu 1 74 -228 1980 139 7 0 chr12 130948225 130948527 -12837928 + AluSx SINE Alu 1 304 -8 1535 134 3 123 chr12 130948527 130948731 -12837724 + AluSx SINE Alu 74 301 -1 667 134 143 0 chr12 130949086 130949198 -12837257 + FLAM_A SINE Alu 1 128 -5 192 276 0 17 chr12 130949207 130949265 -12837190 + MIR SINE MIR 96 152 -110 353 320 19 0 chr12 130949689 130949792 -12836663 - MIR SINE MIR -79 129 25 949 155 19 0 chr12 130950270 130950425 -12836030 + FRAM SINE Alu 1 157 -19 252 86 0 0 chr12 130950426 130950461 -12835994 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 1665 129 4 0 chr12 130950462 130950703 -12835752 + AluJb SINE Alu 1 242 -70 507 219 130 0 chr12 130950742 130950888 -12835567 - MIR SINE MIR -12 250 86 227 267 17 17 chr12 130950954 130951014 -12835441 - MIR SINE MIR -59 149 90 * 472 257 18 0 chr12 130951003 130951116 -12835339 + L2 LINE L2 2922 3036 -277 1833 88 46 11 chr12 130951116 130951400 -12835055 + AluSg SINE Alu 1 294 -16 873 297 7 22 chr12 130951516 130951802 -12834653 + L2 LINE L2 2772 3052 -261 2455 74 0 0 chr12 130951835 130952144 -12834311 - AluSx SINE Alu -3 309 1 303 345 21 14 chr12 130952145 130952287 -12834168 + L1M4 LINE L1 2681 2823 -3323 1859 143 3 13 chr12 130952291 130952605 -12833850 - AluJb SINE Alu -1 311 1 2065 120 0 0 chr12 130952620 130952911 -12833544 - AluSx SINE Alu -21 291 1 393 325 66 6 chr12 130952912 130953078 -12833377 - MLT1K LTR MaLR -365 223 48 510 224 19 9 chr12 130953152 130953259 -12833196 - L2 LINE L2 -3 3310 3203 1575 163 13 30 chr12 130953288 130953588 -12832867 + AluJb SINE Alu 1 295 -17 707 195 6 25 chr12 130953590 130953891 -12832564 + GA-rich Low_complexity Low_complexity 1 306 -343 2186 112 0 6 chr12 130953891 130954205 -12832250 + AluSx SINE Alu 1 312 0 707 195 6 25 chr12 130954205 130954252 -12832203 + GA-rich Low_complexity Low_complexity 306 649 0 22 0 0 0 chr12 130954425 130954447 -12832008 + AT_rich Low_complexity Low_complexity 1 22 0 347 239 71 35 chr12 130954531 130954644 -12831811 + MLT1K LTR MaLR 210 326 -262 301 376 65 6 chr12 130954754 130954924 -12831531 + MIR3 SINE MIR 14 193 -15 2063 98 3 13 chr12 130954954 130955261 -12831194 - AluY SINE Alu -7 304 1 894 147 0 0 chr12 130955261 130955397 -12831058 - AluSq/x SINE Alu -177 136 1 2069 86 27 14 chr12 130955443 130955735 -12830720 - AluSg SINE Alu -12 298 3 2011 131 0 3 chr12 130955739 130956045 -12830410 - AluSx SINE Alu -7 305 1 1168 94 6 0 chr12 130956134 130956294 -12830161 - AluSq SINE Alu -16 297 137 2277 70 7 0 chr12 130956294 130956594 -12829861 - AluY SINE Alu -9 302 1 729 170 7 20 chr12 130957384 130957531 -12828924 - AluSg/x SINE Alu -4 308 164 2161 94 0 7 chr12 130957531 130957830 -12828625 + AluSq SINE Alu 1 297 -16 181 278 19 0 chr12 130957995 130958049 -12828406 - MIR SINE MIR -111 151 97 1710 160 24 0 chr12 130958058 130958345 -12828110 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr12 130958345 130958370 -12828085 + AT_rich Low_complexity Low_complexity 1 25 0 398 198 129 0 chr12 130958449 130958550 -12827905 + MER53 DNA DNA 3 116 -73 189 0 0 0 chr12 130958560 130958581 -12827874 + (T)n Simple_repeat Simple_repeat 1 21 0 795 140 28 0 chr12 130959735 130959878 -12826577 + AluSg/x SINE Alu 164 310 0 238 190 270 29 chr12 130959879 130960016 -12826439 - L1ME LINE L1 -479 5642 5473 1785 141 0 25 chr12 130960150 130960434 -12826021 - AluJb SINE Alu -14 298 22 1372 160 78 36 chr12 130961438 130961719 -12824736 + AluJo SINE Alu 6 298 -14 1470 163 14 34 chr12 130961732 130962004 -12824451 + AluJo SINE Alu 25 292 -20 2040 123 0 19 chr12 130962004 130962321 -12824134 + AluSx SINE Alu 1 311 -1 1470 163 14 34 chr12 130962321 130962342 -12824113 + AluJo SINE Alu 292 312 0 2021 128 0 0 chr12 130962409 130962697 -12823758 + AluSx SINE Alu 2 289 -23 431 307 113 24 chr12 130963372 130963584 -12822871 + MIR SINE MIR 31 261 -1 308 317 67 43 chr12 130964778 130964942 -12821513 + MIR SINE MIR 20 187 -75 728 237 82 40 chr12 130965516 130965769 -12820686 + MIR SINE MIR 3 261 -1 2099 107 0 13 chr12 130965967 130966275 -12820180 - AluSg SINE Alu -6 304 1 2180 108 3 0 chr12 130966441 130966738 -12819717 - AluSq SINE Alu -15 298 1 690 252 48 24 chr12 130966873 130967083 -12819372 - MER58C DNA MER1_type 0 215 1 859 126 84 60 chr12 130968630 130968797 -12817658 - AluJo SINE Alu -58 254 84 1213 164 34 0 chr12 130968798 130969005 -12817450 - AluJo SINE Alu -98 214 1 497 232 99 26 chr12 130969243 130969394 -12817061 + L2 LINE L2 3134 3295 -18 809 158 0 36 chr12 130969609 130969748 -12816707 + FLAM_C SINE Alu 5 138 -5 269 150 0 100 chr12 130969758 130969773 -12816682 + AluYb8 SINE Alu 126 134 -174 2070 107 3 13 chr12 130969773 130970072 -12816383 + AluSx SINE Alu 1 296 -16 655 297 53 89 chr12 130970354 130970738 -12815717 - L3 LINE CR1 -115 1462 1099 1575 177 13 23 chr12 130970738 130971037 -12815418 + AluJo SINE Alu 6 301 -11 655 297 53 89 chr12 130971037 130971157 -12815298 - L3 LINE CR1 -478 1099 976 2364 81 0 0 chr12 130971896 130972203 -12814252 - AluSq SINE Alu -6 307 1 2192 83 0 7 chr12 130973133 130973435 -12813020 + AluSq SINE Alu 1 300 -13 2227 100 0 0 chr12 130973675 130973976 -12812479 + AluSc SINE Alu 1 301 -8 1690 179 3 19 chr12 130974231 130974543 -12811912 - L1MB7 LINE L1 -148 6036 5730 1773 132 0 62 chr12 130974781 130975106 -12811349 + AluSx SINE Alu 1 305 -7 892 265 34 0 chr12 130975802 130976036 -12810419 + L1 LINE L1 4780 5021 -1125 38 22 0 0 chr12 130976107 130976152 -12810303 + AT_rich Low_complexity Low_complexity 1 45 0 2099 120 3 3 chr12 130976175 130976483 -12809972 + AluSc SINE Alu 1 308 -1 719 262 65 9 chr12 130976947 130977161 -12809294 - MIR SINE MIR -36 226 1 475 264 23 8 chr12 130977546 130977675 -12808780 - LTR16C LTR ERVL -46 445 315 759 304 111 34 chr12 130977681 130977893 -12808562 - L2 LINE L2 0 3313 3119 2081 108 9 19 chr12 130977893 130978208 -12808247 + AluSx SINE Alu 1 312 0 759 304 111 34 chr12 130978208 130978802 -12807653 - L2 LINE L2 -194 3119 2432 846 275 141 22 chr12 130978912 130979316 -12807139 - LTR33 LTR ERVL -2 519 68 228 281 16 0 chr12 130979752 130979816 -12806639 + L2 LINE L2 2937 3001 -312 309 221 150 43 chr12 130979861 130980001 -12806454 + L2 LINE L2 3109 3263 -50 1716 178 0 3 chr12 130980944 130981237 -12805218 + AluJo SINE Alu 1 292 -20 372 246 119 8 chr12 130981729 130981855 -12804600 + MIR SINE MIR 73 212 -50 2151 112 0 0 chr12 130981979 130982275 -12804180 + AluSx SINE Alu 1 296 -16 804 125 0 0 chr12 130982580 130982692 -12803763 + AluSq/x SINE Alu 2 113 -199 455 106 15 0 chr12 130982691 130982757 -12803698 - AluJ/FLAM SINE Alu -216 96 30 * 1565 164 3 40 chr12 130982875 130983199 -12803256 + AluJo SINE Alu 1 312 0 1918 99 62 14 chr12 130983311 130983603 -12802852 - AluSq SINE Alu -7 306 1 38 94 0 0 chr12 130983906 130983959 -12802496 + AT_rich Low_complexity Low_complexity 1 53 0 805 215 82 4 chr12 130984121 130984400 -12802055 - AluSx SINE Alu -1 301 1 2238 95 3 0 chr12 130984816 130985122 -12801333 - AluSp SINE Alu -4 309 3 212 196 235 0 chr12 130985301 130985352 -12801103 + MIR SINE MIR 195 257 -5 234 244 116 0 chr12 130985389 130985475 -12800980 + L2 LINE L2 3171 3266 -6 495 0 0 0 chr12 130986082 130986137 -12800318 + (TGG)n Simple_repeat Simple_repeat 1 55 0 748 162 45 13 chr12 130986142 130986296 -12800159 - FAM SINE Alu -14 171 13 2269 43 4 0 chr12 130986835 130987149 -12799306 - AluY SINE Alu 0 315 1 395 178 27 0 chr12 130987196 130987262 -12799193 - AluSg/x SINE Alu -29 273 206 249 169 186 0 chr12 130987262 130987321 -12799134 + MER50 LTR ERV1 2 71 -663 1179 151 0 59 chr12 130987322 130987395 -12799060 - AluJo SINE Alu -106 206 130 2025 107 0 29 chr12 130987395 130987704 -12798751 - AluSx SINE Alu -10 302 3 1179 151 0 59 chr12 130987704 130987849 -12798606 - AluJo SINE Alu -182 130 1 351 207 12 37 chr12 130988374 130988456 -12797999 - L2 LINE L2 0 3272 3193 540 258 133 53 chr12 130988465 130988683 -12797772 + Charlie8 DNA MER1_type 1 236 -2181 258 167 0 0 chr12 130988683 130988719 -12797736 + Alu SINE Alu 1 36 -265 783 195 13 13 chr12 130991463 130991612 -12794843 + FAM SINE Alu 1 149 -36 1732 125 68 7 chr12 130991612 130991892 -12794563 - AluSx SINE Alu -15 297 1 1982 168 42 0 chr12 130991960 130992293 -12794162 + MER7A DNA MER2_type 2 346 0 267 79 0 0 chr12 130993163 130993201 -12793254 + (ATG)n Simple_repeat Simple_repeat 3 40 0 1413 128 64 64 chr12 130994143 130994449 -12792006 + AluJb SINE Alu 1 306 0 26 50 0 0 chr12 130994554 130994594 -12791861 + AT_rich Low_complexity Low_complexity 1 40 0 268 148 0 115 chr12 130994604 130994665 -12791790 - FLAM SINE Alu -11 122 69 246 244 77 13 chr12 130996053 130996131 -12790324 - MIR SINE MIR -74 188 106 1580 165 72 0 chr12 130997338 130997629 -12788826 + AluJb SINE Alu 1 312 0 335 328 199 0 chr12 130997700 130997886 -12788569 - MIR SINE MIR -24 238 16 2145 98 10 0 chr12 130997918 130998214 -12788241 + AluSg SINE Alu 1 299 -11 1979 84 0 4 chr12 130998657 130998919 -12787536 - AluY SINE Alu -15 296 36 812 191 25 12 chr12 130999340 130999502 -12786953 - FRAM SINE Alu -19 157 1 1991 139 7 0 chr12 130999508 130999811 -12786644 - AluSx SINE Alu -7 305 1 2047 113 10 13 chr12 131000143 131000445 -12786010 + AluSq SINE Alu 1 301 -12 1628 110 59 8 chr12 131001085 131001340 -12785115 - AluSx SINE Alu -14 298 31 255 282 39 0 chr12 131003754 131003832 -12782623 - L1ME LINE L1 -444 5677 5597 1775 129 0 58 chr12 131004025 131004336 -12782119 - AluSx SINE Alu -19 293 1 244 189 27 27 chr12 131004336 131004401 -12782054 - Tigger8 DNA MER2_type -321 345 278 2176 96 10 16 chr12 131004754 131005068 -12781387 - AluSq SINE Alu 0 313 2 408 195 23 11 chr12 131005327 131005414 -12781041 - AluJ/FLAM SINE Alu -201 101 14 348 191 86 38 chr12 131005463 131005568 -12780887 - L1MC5 LINE L1 -560 7401 7292 735 192 0 0 chr12 131006286 131006406 -12780049 - FLAM_A SINE Alu -13 120 1 867 206 139 19 chr12 131006409 131006676 -12779779 + L1M4 LINE L1 4416 4714 -1432 432 219 21 0 chr12 131006682 131006778 -12779677 + FLAM_A SINE Alu 32 129 -13 1377 172 32 29 chr12 131006784 131007063 -12779392 + AluJb SINE Alu 1 280 -32 744 153 10 99 chr12 131007094 131007140 -12779315 + L1M4 LINE L1 4778 4827 -1319 1775 79 150 19 chr12 131007140 131007407 -12779048 + AluSx SINE Alu 1 302 0 744 153 10 99 chr12 131007407 131007562 -12778893 + L1M4 LINE L1 4827 4961 -1185 2205 89 0 3 chr12 131007562 131007855 -12778600 + AluSg SINE Alu 1 292 -18 1593 131 7 25 chr12 131007939 131008213 -12778242 - AluJb SINE Alu -23 289 21 573 220 51 33 chr12 131008497 131008711 -12777744 + AluSq SINE Alu 3 220 -93 325 128 0 0 chr12 131008828 131008875 -12777580 + Alu SINE Alu 244 290 -12 872 171 0 0 chr12 131008887 131009033 -12777422 + FRAM SINE Alu 1 141 -35 1742 128 0 78 chr12 131009034 131009354 -12777101 - AluSx SINE Alu -17 295 1 235 98 0 73 chr12 131009513 131009554 -12776901 + Alu SINE Alu 86 123 -10 309 238 0 10 chr12 131009590 131009687 -12776768 - AluJ/monomer SINE Alu 0 301 251 280 136 0 0 chr12 131009689 131009733 -12776722 + (C)n Simple_repeat Simple_repeat 1 44 0 220 122 0 82 chr12 131009734 131009783 -12776672 + (TTCCC)n Simple_repeat Simple_repeat 1 45 0 198 139 116 23 chr12 131010045 131010088 -12776367 - L2 LINE L2 0 3313 3267 1614 168 3 14 chr12 131010113 131010404 -12776051 + AluJo SINE Alu 1 288 -24 1213 84 12 6 chr12 131011375 131011541 -12774914 - AluSp SINE Alu -146 167 1 787 165 0 0 chr12 131011603 131011736 -12774719 + L1MB5 LINE L1 5681 5813 -371 21 0 0 0 chr12 131011945 131011966 -12774489 + GC_rich Low_complexity Low_complexity 1 21 0 1274 129 91 0 chr12 131012618 131012828 -12773627 + L1MB5 LINE L1 5945 6173 -1 349 289 21 0 chr12 131013009 131013106 -12773349 + MER5A DNA MER1_type 8 106 -83 2039 120 0 16 chr12 131013113 131013422 -12773033 - AluSx SINE Alu -8 304 1 994 179 35 80 chr12 131014278 131014448 -12772007 + L1MB5 LINE L1 5161 5337 -843 1902 133 0 10 chr12 131014448 131014741 -12771714 + AluSx SINE Alu 23 312 0 994 179 35 80 chr12 131014741 131014978 -12771477 + L1MB5 LINE L1 5337 5531 -649 2224 67 0 7 chr12 131014978 131015296 -12771159 + AluSq SINE Alu 4 319 0 1944 121 23 16 chr12 131015830 131016135 -12770320 + AluSx SINE Alu 1 307 -5 1432 166 3 85 chr12 131016261 131016592 -12769863 - AluJo SINE Alu -8 304 1 315 325 12 6 chr12 131016627 131016787 -12769668 - L1MC5 LINE L1 -482 7479 7319 814 169 7 14 chr12 131016972 131017120 -12769335 + FRAM SINE Alu 1 146 -30 1796 160 3 0 chr12 131017134 131017428 -12769027 + AluSx SINE Alu 1 295 -17 898 170 18 6 chr12 131017580 131017751 -12768704 + L1MB5 LINE L1 5740 5912 -262 686 202 0 0 chr12 131017766 131017890 -12768565 - FLAM_C SINE Alu -19 124 1 1197 159 3 138 chr12 131017890 131018115 -12768340 + L1MB5 LINE L1 5913 6167 -7 1753 113 13 46 chr12 131018115 131018417 -12768038 - AluSx SINE Alu -18 294 3 1197 159 3 138 chr12 131018417 131018431 -12768024 + L1MB5 LINE L1 6167 6108 -66 2076 118 0 7 chr12 131018431 131018728 -12767727 - AluSx SINE Alu -17 295 1 1197 159 3 138 chr12 131018728 131018783 -12767672 + L1MB5 LINE L1 6107 6168 -6 1418 161 46 21 chr12 131018821 131019101 -12767354 + AluJo SINE Alu 3 289 -23 796 234 0 0 chr12 131019258 131019403 -12767052 + FRAM SINE Alu 2 146 -30 972 189 92 74 chr12 131019909 131020027 -12766428 + AluJo SINE Alu 14 128 -184 1990 143 0 6 chr12 131020027 131020341 -12766114 + AluSx SINE Alu 1 312 0 972 189 92 74 chr12 131020341 131020504 -12765951 + AluJo SINE Alu 128 238 -74 1685 154 22 4 chr12 131020504 131020776 -12765679 + AluSx SINE Alu 1 277 -35 7230 129 157 50 chr12 131021007 131022539 -12763916 - pTR5 LTR ERV1 0 2438 744 1804 92 36 0 chr12 131022540 131022791 -12763664 + AluY SINE Alu 37 296 -15 846 125 0 71 chr12 131023082 131023250 -12763205 + AluSg/x SINE Alu 154 309 -1 1787 153 31 7 chr12 131023260 131023554 -12762901 + AluSx SINE Alu 1 301 -11 1753 164 0 14 chr12 131023562 131023854 -12762601 + AluJo SINE Alu 1 288 -24 769 206 0 0 chr12 131023905 131024036 -12762419 + FLAM_C SINE Alu 1 131 -2 2171 97 7 3 chr12 131024047 131024347 -12762108 + AluSp SINE Alu 1 301 -12 2255 78 0 44 chr12 131024436 131024755 -12761700 + AluSg SINE Alu 6 310 0 1803 153 24 0 chr12 131025108 131025402 -12761053 - AluJo SINE Alu -11 301 1 23 0 0 0 chr12 131025404 131025427 -12761028 + AT_rich Low_complexity Low_complexity 1 23 0 1229 83 0 0 chr12 131026245 131026402 -12760053 - AluSg/x SINE Alu -22 290 134 2064 138 0 0 chr12 131026402 131026713 -12759742 - AluSx SINE Alu -1 311 1 210 313 0 0 chr12 131027001 131027065 -12759390 - MIR SINE MIR -39 223 160 1222 144 14 10 chr12 131027066 131027274 -12759181 - AluSg/x SINE Alu -18 292 84 1937 67 4 15 chr12 131027322 131027494 -12758961 - AluY SINE Alu -7 304 135 2247 82 7 0 chr12 131027494 131027786 -12758669 - AluSp SINE Alu -19 294 1 1937 67 4 15 chr12 131027786 131027880 -12758575 - AluY SINE Alu -176 135 41 1865 138 44 0 chr12 131028144 131028440 -12758015 + AluJo SINE Alu 1 309 -3 438 154 0 39 chr12 131028882 131028960 -12757495 - AluJ/FRAM SINE Alu -10 302 228 404 190 0 13 chr12 131028959 131029038 -12757417 - AluJo/FLAM SINE Alu -187 125 48 * 758 193 88 84 chr12 131029047 131029138 -12757317 - L1MB5 LINE L1 0 6174 6085 1724 122 77 28 chr12 131029138 131029305 -12757150 - AluSx SINE Alu -12 300 112 2465 50 0 3 chr12 131029305 131029605 -12756850 - AluY SINE Alu -10 301 3 1724 122 77 28 chr12 131029605 131029723 -12756732 - AluSx SINE Alu -200 112 1 758 193 88 84 chr12 131029723 131029880 -12756575 - L1MB5 LINE L1 -89 6085 5925 1200 176 0 5 chr12 131029891 131030096 -12756359 - AluJo SINE Alu -15 297 94 1160 199 94 38 chr12 131030096 131030362 -12756093 + AluJo SINE Alu 17 297 -15 323 243 59 52 chr12 131030406 131030542 -12755913 + MIR3 SINE MIR 14 150 -58 1830 158 7 0 chr12 131030830 131030949 -12755506 + AluJo SINE Alu 1 118 -194 216 0 0 0 chr12 131030949 131030973 -12755482 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1830 158 7 0 chr12 131030973 131031157 -12755298 + AluJo SINE Alu 118 306 -6 2100 121 3 10 chr12 131031166 131031473 -12754982 + AluSq SINE Alu 3 307 -6 1302 175 63 79 chr12 131031499 131031802 -12754653 - AluJo SINE Alu -4 298 1 1955 124 3 0 chr12 131031812 131032095 -12754360 - AluSx SINE Alu -21 291 8 541 264 87 44 chr12 131032397 131032613 -12753842 - MLT1C LTR MaLR -18 487 220 1020 148 0 23 chr12 131032628 131032804 -12753651 - AluSg/x SINE Alu -1 309 138 320 263 68 8 chr12 131032805 131032923 -12753532 - MLT1C LTR MaLR -233 234 110 1958 138 0 0 chr12 131032930 131033221 -12753234 - AluSx SINE Alu -21 291 1 27 0 0 0 chr12 131034052 131034079 -12752376 + AT_rich Low_complexity Low_complexity 1 27 0 1960 139 3 7 chr12 131034079 131034374 -12752081 - AluSx SINE Alu -18 294 1 1214 165 0 14 chr12 131034375 131034587 -12751868 - AluJo SINE Alu -17 295 87 2182 106 0 10 chr12 131034619 131034921 -12751534 + AluSx SINE Alu 1 299 -13 1950 139 10 0 chr12 131034929 131035232 -12751223 + AluSx SINE Alu 1 306 -6 201 242 136 0 chr12 131035235 131035301 -12751154 - L2 LINE L2 -12 3260 3186 40 91 0 0 chr12 131036565 131036675 -12749780 + GC_rich Low_complexity Low_complexity 1 110 0 23 20 0 61 chr12 131036704 131036753 -12749702 + GC_rich Low_complexity Low_complexity 1 46 0 30 83 0 0 chr12 131036786 131036858 -12749597 + GC_rich Low_complexity Low_complexity 1 72 0 21 36 0 0 chr12 131037184 131037212 -12749243 + GC_rich Low_complexity Low_complexity 1 28 0 47 52 0 43 chr12 131037307 131037423 -12749032 + GC_rich Low_complexity Low_complexity 1 111 0 26 0 0 0 chr12 131037573 131037599 -12748856 + GC_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 131037672 131037696 -12748759 + (CGG)n Simple_repeat Simple_repeat 1 24 0 2249 91 0 19 chr12 131038676 131038994 -12747461 + AluSq SINE Alu 1 312 -1 1840 147 3 29 chr12 131039962 131040268 -12746187 - AluJo SINE Alu -14 298 1 1896 136 3 7 chr12 131040331 131040632 -12745823 + AluSq SINE Alu 1 300 -13 1662 164 7 7 chr12 131040634 131040932 -12745523 + AluJo SINE Alu 1 298 -14 2728 176 25 4 chr12 131041919 131042449 -12744006 + L1MB7 LINE L1 5533 6073 -111 213 283 29 29 chr12 131042664 131042802 -12743653 + (CCCCG)n Simple_repeat Simple_repeat 1 138 0 * 234 266 32 24 chr12 131042717 131042841 -12743614 + C-rich Low_complexity Low_complexity 6 130 0 677 290 18 25 chr12 131043058 131043337 -12743118 + AluSg1 SINE Alu 14 290 -19 764 161 0 22 chr12 131043403 131043419 -12743036 + L1MB3 LINE L1 6041 6056 -127 931 153 0 0 chr12 131043419 131043550 -12742905 + FLAM_C SINE Alu 1 131 -2 764 161 0 22 chr12 131043550 131043670 -12742785 + L1MB3 LINE L1 6056 6174 -9 755 241 175 55 chr12 131043685 131044492 -12741963 + HAL1 LINE L1 148 856 -1651 504 147 0 0 chr12 131044492 131044567 -12741888 + MER116 DNA Mariner 2 76 -4 755 241 175 55 chr12 131044567 131044607 -12741848 + HAL1 LINE L1 856 890 -1617 2550 37 0 0 chr12 131044607 131044904 -12741551 + AluY SINE Alu 1 297 -14 755 241 175 55 chr12 131044904 131046033 -12740422 + HAL1 LINE L1 890 2437 -70 2213 103 0 0 chr12 131046339 131046640 -12739815 + AluSx SINE Alu 1 301 -11 2024 87 17 7 chr12 131047748 131048047 -12738408 - AluSq SINE Alu -11 302 1 380 216 41 0 chr12 131048584 131048681 -12737774 + Charlie8 DNA MER1_type 80 180 -2237 1937 99 44 0 chr12 131049821 131050093 -12736362 - AluSx SINE Alu -28 284 1 232 268 150 15 chr12 131053059 131053262 -12733193 + MIR SINE MIR 4 242 -20 623 258 117 24 chr12 131053928 131054176 -12732279 - L2 LINE L2 -2 3311 3041 5036 197 69 59 chr12 131054259 131054487 -12731968 + Charlie1a DNA MER1_type 5 229 -2532 2314 45 7 10 chr12 131054487 131054779 -12731676 + AluY SINE Alu 1 291 -20 5036 197 69 59 chr12 131054779 131055614 -12730841 + Charlie1a DNA MER1_type 229 1054 -1707 2133 93 23 10 chr12 131055614 131055915 -12730540 - AluSg SINE Alu -4 306 2 5036 197 69 59 chr12 131055915 131056029 -12730426 + Charlie1a DNA MER1_type 1054 1165 -1596 1788 124 43 13 chr12 131056029 131056328 -12730127 - AluSx SINE Alu -4 308 1 5036 197 69 59 chr12 131056328 131056408 -12730047 + Charlie1a DNA MER1_type 1165 1243 -1518 1962 155 0 3 chr12 131056408 131056717 -12729738 + AluJb SINE Alu 1 308 -4 5036 197 69 59 chr12 131056717 131056887 -12729568 + Charlie1a DNA MER1_type 1243 1450 -5 56 29 0 0 chr12 131057541 131057611 -12728844 + GC_rich Low_complexity Low_complexity 1 70 0 492 200 0 0 chr12 131057635 131057800 -12728655 + G-rich Low_complexity Low_complexity 1 165 0 1505 154 23 8 chr12 131057938 131058029 -12728426 + AluJb SINE Alu 33 121 -191 267 54 0 0 chr12 131058029 131058066 -12728389 + (CA)n Simple_repeat Simple_repeat 2 38 0 1505 154 23 8 chr12 131058066 131058233 -12728222 + AluJb SINE Alu 121 295 -17 2371 76 0 0 chr12 131058266 131058567 -12727888 + AluY SINE Alu 1 301 -10 694 208 0 0 chr12 131058569 131058694 -12727761 + L1MB2 LINE L1 5521 5645 -526 403 152 0 51 chr12 131058696 131058775 -12727680 + Tigger2 DNA MER2_type 2 76 -2642 * 2560 105 65 19 chr12 131058747 131059177 -12727278 + Tigger2 DNA MER2_type 2266 2715 -3 2470 170 48 31 chr12 131059178 131059316 -12727139 + L1MB2 LINE L1 5643 5777 -394 2136 124 0 0 chr12 131059316 131059615 -12726840 + AluSx SINE Alu 1 299 -13 2470 170 48 31 chr12 131059615 131059995 -12726460 + L1MB2 LINE L1 5777 6170 -1 1242 231 84 43 chr12 131061100 131061541 -12724914 + MLT1C LTR MaLR 1 459 -8 328 122 24 12 chr12 131062189 131062271 -12724184 + C-rich Low_complexity Low_complexity 2 84 0 23 54 0 0 chr12 131062331 131062368 -12724087 + GC_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr12 131063550 131063580 -12722875 + AT_rich Low_complexity Low_complexity 1 30 0 183 139 0 0 chr12 131064026 131064062 -12722393 + (A)n Simple_repeat Simple_repeat 1 36 0 2205 102 0 10 chr12 131064617 131064930 -12721525 - AluSx SINE Alu -2 310 1 2267 74 0 24 chr12 131065054 131065351 -12721104 - AluSq SINE Alu -23 290 1 2011 141 0 0 chr12 131066102 131066399 -12720056 + AluSx SINE Alu 1 297 -15 272 255 128 39 chr12 131066633 131066735 -12719720 - MIR3 SINE MIR -11 197 87 291 305 141 0 chr12 131066788 131066916 -12719539 - MIR SINE MIR -3 259 114 1841 108 45 4 chr12 131068150 131068418 -12718037 + AluSx SINE Alu 12 290 -22 2009 129 13 3 chr12 131069396 131069698 -12716757 + AluSq SINE Alu 1 305 -8 2010 131 0 6 chr12 131069723 131070036 -12716419 + AluSq SINE Alu 1 311 -2 2626 165 26 22 chr12 131070055 131070519 -12715936 + L1MB5 LINE L1 5676 6144 -30 2234 91 0 10 chr12 131070519 131070816 -12715639 + AluY SINE Alu 1 294 -17 2626 165 26 22 chr12 131070816 131070848 -12715607 + L1MB5 LINE L1 6144 6174 0 1599 139 133 10 chr12 131070855 131070958 -12715497 + MER7A DNA MER2_type 1 90 -2948 1887 157 3 13 chr12 131070958 131071264 -12715191 + AluJb SINE Alu 1 303 -9 1599 139 133 10 chr12 131071264 131071469 -12714986 + MER7A DNA MER2_type 90 345 -1 405 0 0 0 chr12 131071470 131071515 -12714940 + (TG)n Simple_repeat Simple_repeat 2 46 0 1671 179 7 26 chr12 131071594 131071902 -12714553 + AluJb SINE Alu 1 302 -10 815 146 0 0 chr12 131071902 131072025 -12714430 + FLAM_C SINE Alu 4 126 -7 1661 173 15 7 chr12 131072169 131072301 -12714154 + AluJo SINE Alu 1 131 -181 2364 102 0 0 chr12 131072301 131072596 -12713859 + AluSq SINE Alu 2 296 -17 1661 173 15 7 chr12 131072596 131072735 -12713720 + AluJo SINE Alu 131 274 -38 185 94 31 0 chr12 131072999 131073031 -12713424 + CT-rich Low_complexity Low_complexity 4 36 0 241 321 84 19 chr12 131073137 131073352 -12713103 + L1MC5 LINE L1 6963 7191 -770 950 183 20 30 chr12 131073356 131073558 -12712897 - AluJo SINE Alu -11 301 102 1018 175 6 0 chr12 131073677 131073843 -12712612 - FRAM SINE Alu -17 159 1 2257 134 0 10 chr12 131073849 131074163 -12712292 - AluSq SINE Alu 0 313 3 958 176 172 43 chr12 131074205 131074461 -12711994 - AluJo SINE Alu -12 290 2 847 150 33 39 chr12 131074469 131074649 -12711806 - L1PA15 LINE L1 -5 6160 5982 2559 64 0 0 chr12 131074649 131074946 -12711509 - AluY SINE Alu -14 297 1 1773 159 25 3 chr12 131074979 131075146 -12711309 - AluJb SINE Alu -17 295 118 267 54 0 0 chr12 131075146 131075183 -12711272 + (TG)n Simple_repeat Simple_repeat 2 38 0 1773 159 25 3 chr12 131075183 131075298 -12711157 - AluJb SINE Alu -194 118 7 2222 121 7 0 chr12 131075886 131076193 -12710262 - AluSg SINE Alu -1 309 1 233 271 71 24 chr12 131076385 131076470 -12709985 - L2 LINE L2 -1 3271 3183 2259 104 10 0 chr12 131076477 131076774 -12709681 + AluSx SINE Alu 1 300 -12 536 90 0 34 chr12 131076794 131076883 -12709572 + AluSg/x SINE Alu 218 303 -6 1948 166 0 13 chr12 131076984 131077298 -12709157 + AluJb SINE Alu 1 310 -2 210 37 0 0 chr12 131077310 131077337 -12709118 + (CA)n Simple_repeat Simple_repeat 2 28 0 1110 232 89 41 chr12 131077389 131077803 -12708652 - LTR33 LTR ERVL -4 517 84 2185 130 0 16 chr12 131078129 131078445 -12708010 + AluJb SINE Alu 1 311 -1 899 181 76 78 chr12 131078488 131078798 -12707657 + MLT1B LTR MaLR 2 390 0 275 333 105 14 chr12 131078971 131079181 -12707274 + L2 LINE L2 2446 2674 -640 623 212 5 101 chr12 131079198 131079376 -12707079 + L1MB3 LINE L1 5978 6133 -50 2334 108 0 0 chr12 131079376 131079671 -12706784 - AluSx SINE Alu -17 295 1 623 212 5 101 chr12 131079671 131079709 -12706746 + L1MB3 LINE L1 6133 6173 -10 1647 91 18 0 chr12 131079709 131079929 -12706526 - AluSq SINE Alu -17 296 73 1017 108 0 0 chr12 131079942 131080072 -12706383 - AluSg1 SINE Alu -178 131 2 1887 163 3 3 chr12 131080099 131080393 -12706062 + AluSx SINE Alu 1 294 -18 655 200 0 0 chr12 131080420 131080535 -12705920 + FRAM SINE Alu 1 114 -62 1395 158 0 9 chr12 131080535 131080790 -12705665 + AluJo SINE Alu 85 337 0 1983 127 41 3 chr12 131081385 131081677 -12704778 - AluSx SINE Alu -9 303 1 350 272 118 15 chr12 131082018 131082154 -12704301 - MIR SINE MIR -81 181 32 2138 116 0 23 chr12 131082222 131082384 -12704071 - AluSx SINE Alu -18 294 130 180 97 0 0 chr12 131082384 131082415 -12704040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2161 94 7 17 chr12 131082415 131082702 -12703753 - AluSp SINE Alu -29 284 1 2138 116 0 23 chr12 131082702 131082839 -12703616 - AluSx SINE Alu -180 132 1 235 0 0 54 chr12 131082843 131082880 -12703575 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 823 178 0 0 chr12 131082880 131083026 -12703429 - FRAM SINE Alu -18 148 3 2144 138 0 0 chr12 131083038 131083334 -12703121 - AluSx SINE Alu -16 296 1 352 233 25 33 chr12 131083334 131083454 -12703001 + MER5A DNA MER1_type 48 166 -23 296 317 17 17 chr12 131083349 131083469 -12702986 - MER5A DNA MER1_type -50 139 20 * 23 0 0 0 chr12 131085082 131085105 -12701350 + AT_rich Low_complexity Low_complexity 1 23 0 2364 89 3 7 chr12 131085105 131085407 -12701048 + AluSx SINE Alu 1 301 -11 552 172 19 57 chr12 131085445 131085475 -12700980 - Charlie5 DNA MER1_type -1 2623 2593 1758 176 20 7 chr12 131085475 131085777 -12700678 + AluJb SINE Alu 1 306 -6 552 172 19 57 chr12 131085777 131085903 -12700552 - Charlie5 DNA MER1_type -31 2593 2473 1430 121 5 0 chr12 131085942 131086132 -12700323 - AluSg/x SINE Alu -52 260 70 1458 183 21 87 chr12 131086672 131086842 -12699613 + L1MB2 LINE L1 5161 5341 -830 2047 133 0 10 chr12 131086842 131087135 -12699320 + AluSx SINE Alu 23 312 0 1458 183 21 87 chr12 131087135 131087372 -12699083 + L1MB2 LINE L1 5341 5511 -660 2352 80 7 7 chr12 131087372 131087672 -12698783 + AluY SINE Alu 4 303 -8 1458 183 21 87 chr12 131087672 131087799 -12698656 + L1MB2 LINE L1 5511 5645 -526 401 157 0 14 chr12 131087801 131087871 -12698584 - MER8 DNA MER2_type -1 238 170 * 2583 106 65 19 chr12 131087852 131088285 -12698170 + Tigger2 DNA MER2_type 2266 2718 0 2221 178 48 33 chr12 131088285 131088422 -12698033 + L1MB2 LINE L1 5645 5778 -393 2266 124 0 0 chr12 131088422 131088721 -12697734 + AluSx SINE Alu 1 299 -13 2221 178 48 33 chr12 131088721 131089101 -12697354 + L1MB2 LINE L1 5778 6170 -1 1178 231 84 43 chr12 131090204 131090645 -12695810 + MLT1C LTR MaLR 1 459 -8 255 364 98 21 chr12 131090787 131091073 -12695382 + L2 LINE L2 2945 3252 -20 1780 163 31 3 chr12 131092223 131092517 -12693938 + AluJo SINE Alu 2 303 -9 253 254 0 0 chr12 131092662 131092717 -12693738 - MER46C DNA MER2_type -283 55 1 1957 163 0 0 chr12 131094040 131094354 -12692101 - AluSx SINE Alu 0 314 1 348 24 0 0 chr12 131094528 131094569 -12691886 + (CA)n Simple_repeat Simple_repeat 2 42 0 3905 185 26 39 chr12 131094772 131094893 -12691562 + L1M4 LINE L1 4493 4614 -1532 1620 193 26 7 chr12 131094893 131095198 -12691257 + AluJo SINE Alu 1 311 -1 3905 185 26 39 chr12 131095198 131095316 -12691139 + L1M4 LINE L1 4614 4732 -1414 2112 121 3 0 chr12 131095316 131095598 -12690857 + AluSq SINE Alu 5 287 -26 2323 108 0 0 chr12 131095598 131095895 -12690560 + AluSc SINE Alu 1 297 -12 3905 185 26 39 chr12 131095895 131096342 -12690113 + L1M4 LINE L1 4731 5168 -978 2324 101 3 0 chr12 131096342 131096640 -12689815 + AluSp SINE Alu 2 300 -13 3905 185 26 39 chr12 131096640 131096873 -12689582 + L1M4 LINE L1 5168 5403 -743 481 119 71 0 chr12 131097118 131097202 -12689253 + AluSc SINE Alu 177 266 -43 1682 159 7 37 chr12 131097204 131097500 -12688955 - AluJb SINE Alu -25 287 1 706 202 0 0 chr12 131097556 131097685 -12688770 - FLAM_C SINE Alu -10 133 5 573 301 26 0 chr12 131097690 131097843 -12688612 - MIR SINE MIR -85 177 21 1796 174 3 40 chr12 131099223 131099545 -12686910 - AluJo SINE Alu -2 310 1 418 321 42 6 chr12 131099620 131099788 -12686667 - MIR SINE MIR 0 262 89 370 255 43 0 chr12 131099986 131100080 -12686375 + MIR SINE MIR 99 196 -66 192 40 0 0 chr12 131100184 131100209 -12686246 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 2020 129 11 0 chr12 131100215 131100494 -12685961 - AluSx SINE Alu -30 282 1 208 286 18 0 chr12 131100585 131100641 -12685814 + GA-rich Low_complexity Low_complexity 4 60 0 1651 183 3 26 chr12 131101331 131101502 -12684953 - AluJo SINE Alu -8 304 142 2112 135 3 0 chr12 131101502 131101798 -12684657 - AluSx SINE Alu -15 297 1 1651 183 3 26 chr12 131101798 131101932 -12684523 - AluJo SINE Alu -170 142 6 1809 163 17 0 chr12 131102831 131103119 -12683336 - AluJo SINE Alu -9 303 11 268 81 0 0 chr12 131103144 131103181 -12683274 - Alu SINE Alu -253 47 11 261 108 0 0 chr12 131103175 131103212 -12683243 - Alu SINE Alu -253 47 11 * 247 108 0 0 chr12 131103206 131103243 -12683212 - Alu SINE Alu -252 47 11 * 263 108 0 0 chr12 131103237 131103274 -12683181 - Alu SINE Alu -255 47 11 * 288 122 0 0 chr12 131103268 131103309 -12683146 - Alu SINE Alu -255 47 7 236 318 0 0 chr12 131103563 131103629 -12682826 + L2 LINE L2 3230 3295 -18 813 134 0 0 chr12 131103637 131103756 -12682699 - AluSg/x SINE Alu -7 303 185 189 74 0 0 chr12 131103975 131104002 -12682453 + (TCC)n Simple_repeat Simple_repeat 3 29 0 738 185 154 36 chr12 131104330 131104525 -12681930 - AluSg/x SINE Alu -14 296 79 481 236 14 45 chr12 131104550 131104561 -12681894 + L1MB8 LINE L1 5879 5889 -289 2015 154 0 0 chr12 131104561 131104895 -12681560 + AluJb SINE Alu 1 334 0 481 236 14 45 chr12 131104895 131105048 -12681407 + L1MB8 LINE L1 5889 6037 -141 2040 113 11 3 chr12 131105049 131105331 -12681124 - AluSx SINE Alu 0 312 29 2389 99 3 0 chr12 131105332 131105634 -12680821 - AluSx SINE Alu -7 305 3 275 108 0 0 chr12 131105636 131105673 -12680782 - AluSx SINE Alu -264 37 1 643 201 20 7 chr12 131105675 131105824 -12680631 + L1MB8 LINE L1 6028 6178 0 1227 84 11 28 chr12 131108197 131108375 -12678080 - AluJo SINE Alu -44 268 94 295 181 0 104 chr12 131108759 131108952 -12677503 + C-rich Low_complexity Low_complexity 2 174 0 2220 155 48 10 chr12 131109738 131110150 -12676305 - MSTA LTR MaLR 0 428 1 365 294 35 46 chr12 131111022 131111205 -12675250 - MIR SINE MIR -50 212 34 364 258 11 0 chr12 131111290 131111383 -12675072 - MER103 DNA DNA -71 95 2 447 316 32 21 chr12 131112435 131112622 -12673833 - MIR SINE MIR -12 250 62 204 268 13 6 chr12 131112609 131112694 -12673761 - MIR SINE MIR -17 191 105 * 1171 122 18 0 chr12 131113182 131113346 -12673109 - AluSg/x SINE Alu -9 303 137 2385 76 0 0 chr12 131113385 131113676 -12672779 + AluY SINE Alu 5 295 -16 305 193 176 25 chr12 131113724 131113843 -12672612 + L1ME4a LINE L1 5985 6121 0 709 254 10 19 chr12 131114371 131114580 -12671875 + AluJo SINE Alu 4 210 -102 630 318 116 12 chr12 131115460 131115787 -12670668 + LTR16A LTR ERVL 88 448 -2 632 142 0 0 chr12 131116618 131116724 -12669731 + AluSp/q SINE Alu 200 305 -8 501 206 19 9 chr12 131117013 131117120 -12669335 - L2 LINE L2 -3 3310 3203 1725 163 13 30 chr12 131117149 131117449 -12669006 + AluJb SINE Alu 1 295 -17 800 185 3 25 chr12 131117453 131117770 -12668685 + GA-rich Low_complexity Low_complexity 1 310 0 534 169 34 8 chr12 131117774 131117892 -12668563 + AluSq/x SINE Alu 5 125 -187 368 284 47 20 chr12 131118036 131118184 -12668271 + MIR SINE MIR 2 153 -109 2115 116 7 17 chr12 131118471 131118764 -12667691 - AluSx SINE Alu -18 294 5 1634 167 137 62 chr12 131119366 131119562 -12666893 + MLT1C LTR MaLR 3 183 -284 2707 61 0 0 chr12 131119562 131119872 -12666583 + AluSx SINE Alu 1 310 -2 1634 167 137 62 chr12 131119872 131120107 -12666348 + MLT1C LTR MaLR 183 466 -1 625 200 0 16 chr12 131120167 131120326 -12666129 + FLAM_A SINE Alu 2 133 0 2347 102 0 3 chr12 131120438 131120742 -12665713 + AluSx SINE Alu 1 303 -9 2060 132 0 16 chr12 131321084 131321395 -12465060 - AluSc SINE Alu -1 308 3 912 78 28 21 chr12 131321407 131321548 -12464907 - AluYb8 SINE Alu -3 315 174 2350 64 0 0 chr12 131321579 131321892 -12464563 + AluY SINE Alu 1 313 0 2428 93 7 3 chr12 131321897 131322207 -12464248 + AluSx SINE Alu 1 311 -1 904 156 0 0 chr12 131322383 131322518 -12463937 + AluJb SINE Alu 147 281 -31 1667 149 15 26 chr12 131322556 131322824 -12463631 - AluSx SINE Alu -30 282 18 270 279 55 71 chr12 131322860 131323043 -12463412 - MER102b DNA MER1_type 0 341 162 368 83 33 0 chr12 131323056 131323116 -12463339 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2055 132 0 7 chr12 131323116 131323403 -12463052 - AluSq SINE Alu -28 285 1 469 222 206 74 chr12 131323447 131323563 -12462892 + MIR SINE MIR 19 118 -144 2569 56 0 10 chr12 131323563 131323868 -12462587 + AluY SINE Alu 1 302 -9 469 222 206 74 chr12 131323868 131323940 -12462515 + MIR SINE MIR 118 232 -30 1939 123 18 0 chr12 131324070 131324355 -12462100 - AluY SINE Alu -21 290 1 1520 106 10 0 chr12 131324783 131324991 -12461464 - AluSg/x SINE Alu -12 298 89 2004 121 3 48 chr12 131325164 131325478 -12460977 + AluSx SINE Alu 1 300 -12 2170 82 54 4 chr12 131325478 131325757 -12460698 + AluY SINE Alu 1 293 -18 391 215 172 0 chr12 131325757 131325850 -12460605 + L1MC4 LINE L1 7591 7699 -343 2585 59 10 0 chr12 131325854 131326160 -12460295 + AluSp SINE Alu 1 309 -4 702 142 8 17 chr12 131326183 131326303 -12460152 + FLAM_C SINE Alu 5 123 -20 772 158 59 89 chr12 131326305 131326364 -12460091 + L1MB7 LINE L1 5891 5950 -234 2405 71 7 16 chr12 131326364 131326672 -12459783 - AluY SINE Alu -6 305 1 772 158 59 89 chr12 131326672 131326815 -12459640 + L1MB7 LINE L1 5950 6087 -97 1255 78 150 0 chr12 131326915 131327106 -12459349 + AluSg/x SINE Alu 88 303 0 388 171 0 13 chr12 131327106 131327182 -12459273 - L1MB8 LINE L1 -57 6121 6047 * 418 183 16 20 chr12 131327160 131327272 -12459183 - L1MB8 LINE L1 -13 6161 6047 207 0 0 0 chr12 131327272 131327295 -12459160 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 341 197 0 13 chr12 131327295 131327371 -12459084 - L1MB8 LINE L1 -57 6121 6047 * 198 0 0 0 chr12 131327371 131327393 -12459062 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1473 201 52 69 chr12 131327393 131327635 -12458820 - L1MB7 LINE L1 -59 6125 5880 2355 80 3 10 chr12 131327635 131327937 -12458518 - AluSq SINE Alu -13 300 1 1473 201 52 69 chr12 131327937 131327996 -12458459 - L1MB7 LINE L1 -304 5880 5822 2049 135 7 3 chr12 131327996 131328292 -12458163 + AluSx SINE Alu 1 297 -15 2391 75 3 16 chr12 131328292 131328598 -12457857 + AluY SINE Alu 1 302 -9 1473 201 52 69 chr12 131328293 131328711 -12457744 - L1MB7 LINE L1 -362 5822 5715 2082 108 24 0 chr12 131328716 131329003 -12457452 + AluSx SINE Alu 13 306 -6 260 43 22 0 chr12 131330039 131330085 -12456370 + AluSp/q SINE Alu 257 303 0 381 148 0 119 chr12 131330246 131330287 -12456168 - L1ME3A LINE L1 -2 6168 6124 1643 141 23 56 chr12 131330287 131330593 -12455862 + AluJo SINE Alu 1 296 -16 1554 214 0 10 chr12 131330600 131330899 -12455556 + AluJb SINE Alu 1 296 -16 381 148 0 119 chr12 131330899 131330950 -12455505 - L1ME3A LINE L1 -52 6118 6080 2609 62 0 0 chr12 131331122 131331429 -12455026 + AluSg SINE Alu 1 307 -3 509 146 0 0 chr12 131331456 131331578 -12454877 - FRAM SINE Alu 0 192 71 1887 177 0 0 chr12 131331593 131331902 -12454553 - AluJb SINE Alu 0 309 1 473 200 147 13 chr12 131331911 131332061 -12454394 - MER3 DNA MER1_type -86 123 1 2016 123 7 29 chr12 131332166 131332474 -12453981 + AluSx SINE Alu 1 301 -11 255 328 80 38 chr12 131332565 131332827 -12453628 + L1ME LINE L1 5365 5637 -484 1062 75 0 0 chr12 131332888 131333022 -12453433 - AluSg/x SINE Alu -5 307 174 201 333 0 12 chr12 131333030 131333114 -12453341 - MIR SINE MIR -59 203 121 1028 106 14 0 chr12 131333115 131333256 -12453199 + AluSq/x SINE Alu 3 145 -167 2011 126 0 0 chr12 131333256 131333527 -12452928 + AluSx SINE Alu 42 312 0 203 314 0 23 chr12 131333530 131333616 -12452839 - MIR SINE MIR -133 129 46 485 187 55 0 chr12 131333685 131333776 -12452679 + FLAM_C SINE Alu 25 120 -23 1148 179 14 79 chr12 131333789 131334079 -12452376 + AluJo SINE Alu 39 309 -3 2382 82 6 16 chr12 131334096 131334411 -12452044 + AluSq SINE Alu 1 312 -1 190 111 0 0 chr12 131334545 131334572 -12451883 + L2 LINE L2 3272 3298 -15 207 279 8 107 chr12 131334824 131334878 -12451577 + MIR SINE MIR 113 150 -112 1830 145 10 20 chr12 131334878 131335182 -12451273 - AluSx SINE Alu -11 301 1 207 279 8 107 chr12 131335182 131335249 -12451206 + MIR SINE MIR 150 222 -40 1540 187 17 27 chr12 131335285 131335584 -12450871 + AluJo SINE Alu 1 296 -16 2323 80 0 0 chr12 131335587 131335863 -12450592 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr12 131335869 131335907 -12450548 + (TAA)n Simple_repeat Simple_repeat 2 39 0 750 221 55 28 chr12 131336678 131336895 -12449560 + MIR SINE MIR 40 262 0 325 275 48 88 chr12 131337466 131337667 -12448788 - L1MC/D LINE L1 -482 5639 5607 2377 77 7 7 chr12 131337667 131337964 -12448491 - AluSc SINE Alu -12 297 1 325 275 48 88 chr12 131337964 131338099 -12448356 - L1MC/D LINE L1 -514 5607 5468 2126 114 4 0 chr12 131338513 131338794 -12447661 - AluSx SINE Alu -17 295 14 230 42 271 0 chr12 131338803 131338851 -12447604 - L1MB3 LINE L1 -1 6182 6122 282 207 115 0 chr12 131338851 131338938 -12447517 - L1MB3 LINE L1 -2 6181 6085 1177 150 115 73 chr12 131338939 131339160 -12447295 - MER7A DNA MER2_type -2692 346 111 1729 133 0 12 chr12 131339160 131339416 -12447039 + AluSx SINE Alu 54 306 -6 1177 150 115 73 chr12 131339416 131339480 -12446975 - MER7A DNA MER2_type -2927 111 51 2633 134 21 88 chr12 131339504 131339686 -12446769 - L1MB3 LINE L1 -96 6087 5894 2538 74 0 0 chr12 131339686 131339984 -12446471 - AluSp SINE Alu -13 300 3 2174 116 7 16 chr12 131339985 131340295 -12446160 - AluSc SINE Alu 0 309 3 2633 134 21 88 chr12 131340295 131340381 -12446074 - L1MB3 LINE L1 -289 5894 5804 2324 109 0 0 chr12 131340381 131340683 -12445772 - AluSc SINE Alu -7 302 1 2633 134 21 88 chr12 131340683 131340864 -12445591 - L1MB3 LINE L1 -379 5804 5678 1730 152 26 0 chr12 131340864 131341134 -12445321 - AluJo SINE Alu -31 281 5 2633 134 21 88 chr12 131341134 131341247 -12445208 - L1MB3 LINE L1 -505 5678 5559 982 335 52 34 chr12 131341485 131342020 -12444435 + MLT1K LTR MaLR 10 554 -34 956 68 0 0 chr12 131342040 131342157 -12444298 + AluSq/x SINE Alu 1 117 -195 647 38 0 0 chr12 131342157 131342236 -12444219 - AluY SINE Alu -15 296 218 1900 117 4 0 chr12 131342336 131342593 -12443862 - AluSp SINE Alu -55 258 1 309 191 0 16 chr12 131342614 131342677 -12443778 + L2 LINE L2 3188 3249 -64 2318 110 0 3 chr12 131342688 131342996 -12443459 - AluSx SINE Alu -4 308 2 2322 95 3 0 chr12 131342997 131343291 -12443164 - AluY SINE Alu -16 295 1 432 0 0 0 chr12 131343314 131343362 -12443093 + (CA)n Simple_repeat Simple_repeat 2 49 0 2142 130 7 0 chr12 131343365 131343657 -12442798 - AluSq SINE Alu -19 294 1 2215 89 50 0 chr12 131343671 131343951 -12442504 - AluSx SINE Alu -18 294 1 229 343 29 9 chr12 131344178 131344283 -12442172 + MIR SINE MIR 20 126 -82 678 246 104 26 chr12 131344396 131344664 -12441791 - L2 LINE L2 -1 3312 3024 390 147 0 0 chr12 131344704 131344772 -12441683 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 2123 120 0 0 chr12 131344772 131345055 -12441400 - AluSx SINE Alu -20 292 10 474 157 0 0 chr12 131345065 131345135 -12441320 - AluS SINE Alu -241 71 2 278 286 0 0 chr12 131345136 131345192 -12441263 + L2 LINE L2 3235 3290 -23 319 87 0 0 chr12 131345193 131345239 -12441216 - FLAM SINE Alu 0 133 88 416 197 102 47 chr12 131345279 131345406 -12441049 + L2 LINE L2 3179 3312 -1 393 184 26 0 chr12 131345461 131345537 -12440918 + MLT1C LTR MaLR 61 138 -329 327 217 0 0 chr12 131345567 131345627 -12440828 - AluJb SINE Alu -21 281 222 3594 60 47 0 chr12 131345627 131346093 -12440362 - LTR14B LTR ERVK -117 491 4 1579 145 0 0 chr12 131346097 131346324 -12440131 - AluJb SINE Alu -85 227 1 723 210 71 56 chr12 131346330 131346582 -12439873 + MLT1C LTR MaLR 160 415 -52 208 139 0 28 chr12 131346582 131346618 -12439837 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 2255 108 3 13 chr12 131346619 131346925 -12439530 - AluSp SINE Alu -10 303 1 1299 185 0 0 chr12 131346928 131347139 -12439316 - AluJo SINE Alu -18 294 84 314 169 123 0 chr12 131347139 131347204 -12439251 + MLT1B LTR MaLR 318 390 0 1776 131 89 17 chr12 131347207 131347498 -12438957 + AluSx SINE Alu 1 312 0 193 317 0 50 chr12 131347523 131347643 -12438812 - L2 LINE L2 -280 3033 2920 22 0 0 0 chr12 131348195 131348217 -12438238 + GC_rich Low_complexity Low_complexity 1 22 0 1902 94 4 4 chr12 131348680 131348924 -12437531 - AluSc SINE Alu -65 244 1 1691 179 46 7 chr12 131348941 131349226 -12437229 - AluJb SINE Alu -15 297 2 231 324 36 0 chr12 131349454 131349565 -12436890 - L1ME3A LINE L1 -29 6141 6027 2231 104 18 0 chr12 131349733 131350036 -12436419 - AluSx SINE Alu 0 308 1 23 0 0 29 chr12 131350040 131350061 -12436394 + AT_rich Low_complexity Low_complexity 1 22 -11 459 0 0 0 chr12 131350061 131350112 -12436343 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 29 chr12 131350112 131350124 -12436331 + AT_rich Low_complexity Low_complexity 22 33 0 961 180 48 150 chr12 131350222 131350400 -12436055 - AluJo SINE Alu -3 299 169 2055 147 0 22 chr12 131350400 131350719 -12435736 + AluSx SINE Alu 1 312 0 961 180 48 150 chr12 131350719 131350873 -12435582 - AluJo SINE Alu -133 169 1 626 178 0 0 chr12 131351024 131351142 -12435313 + FLAM_A SINE Alu 23 140 -2 2298 88 0 7 chr12 131351149 131351463 -12434992 + AluSq SINE Alu 1 312 0 1983 109 77 0 chr12 131351477 131351751 -12434704 + AluSx SINE Alu 1 295 -17 2327 101 3 3 chr12 131351752 131352050 -12434405 + AluSx SINE Alu 2 299 -13 311 264 126 0 chr12 131352395 131352482 -12433973 + L2 LINE L2 3216 3313 0 400 257 102 27 chr12 131352514 131352701 -12433754 + LTR33A LTR ERVL 14 214 -309 2665 56 0 0 chr12 131352741 131353044 -12433411 - AluY SINE Alu -8 303 1 2042 141 0 3 chr12 131353073 131353364 -12433091 - AluJb SINE Alu -22 290 1 2354 221 93 12 chr12 131353376 131353936 -12432519 - MLT2F LTR ERVL -53 610 6 1041 131 87 57 chr12 131353991 131354056 -12432399 - LTR47A LTR ERVL -23 429 367 1789 179 3 7 chr12 131354056 131354353 -12432102 - AluJo SINE Alu -16 296 1 1041 131 87 57 chr12 131354353 131354654 -12431801 - LTR47A LTR ERVL -85 367 1 604 228 239 8 chr12 131354664 131354923 -12431532 - MLT1L LTR MaLR -23 592 274 1994 120 18 0 chr12 131354934 131355217 -12431238 + AluJo SINE Alu 10 297 -15 1959 122 20 33 chr12 131355237 131355540 -12430915 + AluSx SINE Alu 1 299 -13 292 276 0 0 chr12 131355540 131355598 -12430857 - MER45 DNA AcHobo -1479 102 45 21 0 0 0 chr12 131355740 131355761 -12430694 + AT_rich Low_complexity Low_complexity 1 21 0 2345 70 3 30 chr12 131355764 131356066 -12430389 - AluSp SINE Alu -19 294 1 2439 80 0 13 chr12 131356068 131356370 -12430085 - AluSq SINE Alu -15 298 1 29 0 0 0 chr12 131356921 131356950 -12429505 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr12 131357162 131357187 -12429268 + (T)n Simple_repeat Simple_repeat 1 25 0 250 263 0 0 chr12 131357192 131357249 -12429206 - LTR51 LTR ERV1 -41 630 574 2610 230 91 81 chr12 131357321 131357850 -12428605 - L1MEc LINE L1 -5246 1150 628 2140 123 0 0 chr12 131357850 131358134 -12428321 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr12 131358134 131358159 -12428296 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 1914 127 15 70 chr12 131358165 131358495 -12427960 + AluSx SINE Alu 1 312 0 2610 230 91 81 chr12 131358495 131359055 -12427400 - L1MEc LINE L1 -5772 624 42 2247 122 0 0 chr12 131359076 131359371 -12427084 + AluSx SINE Alu 1 295 -17 2440 84 3 3 chr12 131359371 131359681 -12426774 + AluY SINE Alu 1 310 -1 389 229 95 0 chr12 131359683 131359788 -12426667 + Charlie8 DNA MER1_type 162 276 -2141 2292 106 3 0 chr12 131360366 131360659 -12425796 - AluSx SINE Alu -18 294 1 285 270 117 0 chr12 131360878 131360911 -12425544 - MIR SINE MIR -23 239 211 312 27 0 0 chr12 131360911 131360948 -12425507 + (TG)n Simple_repeat Simple_repeat 2 38 0 285 270 117 0 chr12 131360948 131361025 -12425430 - MIR SINE MIR -51 211 116 1892 148 65 0 chr12 131361040 131361330 -12425125 - AluJo SINE Alu -3 309 1 298 260 195 32 chr12 131361330 131361453 -12425002 - MER5A DNA MER1_type -7 182 40 250 254 0 34 chr12 131361458 131361517 -12424938 - MIR SINE MIR -84 124 68 292 336 43 7 chr12 131361661 131361801 -12424654 + L1ME LINE L1 5677 5821 -349 1749 173 3 0 chr12 131361912 131362195 -12424260 + AluJb SINE Alu 25 308 -4 2398 104 0 0 chr12 131362200 131362498 -12423957 + AluSx SINE Alu 2 299 -13 207 261 148 9 chr12 131362524 131362639 -12423816 + MIR SINE MIR 116 246 -16 2065 133 3 3 chr12 131362747 131363041 -12423414 - AluSq SINE Alu -14 299 6 467 211 0 0 chr12 131363263 131363353 -12423102 + AluSg/x SINE Alu 209 298 -11 2323 104 0 0 chr12 131363398 131363697 -12422758 + AluSx SINE Alu 1 299 -13 2401 70 0 10 chr12 131363699 131363998 -12422457 + AluSx SINE Alu 1 296 -16 2637 44 3 0 chr12 131363998 131364294 -12422161 + AluY SINE Alu 1 297 -14 772 253 82 47 chr12 131364301 131364473 -12421982 + MER113 DNA MER1_type? 136 300 -221 2247 71 14 7 chr12 131364473 131364768 -12421687 + AluSq SINE Alu 1 297 -16 772 253 82 47 chr12 131364768 131364935 -12421520 + MER113 DNA MER1_type? 300 487 -34 1750 147 23 16 chr12 131365045 131365351 -12421104 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr12 131365486 131365509 -12420946 + GC_rich Low_complexity Low_complexity 1 23 0 2002 94 36 7 chr12 131365615 131365927 -12420528 - AluSx SINE Alu 0 320 1 749 289 22 20 chr12 131366030 131366501 -12419954 + L2 LINE L2 2706 3181 -132 256 315 22 11 chr12 131366633 131366725 -12419730 + L2 LINE L2 3208 3300 -13 201 74 0 0 chr12 131366725 131366752 -12419703 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1994 106 64 0 chr12 131366830 131367113 -12419342 + AluSq SINE Alu 1 301 -12 393 225 22 0 chr12 131367118 131367154 -12419301 + GA-rich Low_complexity Low_complexity 2 36 -106 2764 39 0 3 chr12 131367154 131367464 -12418991 + AluY SINE Alu 1 309 -2 393 225 22 0 chr12 131367464 131367565 -12418890 + GA-rich Low_complexity Low_complexity 36 142 0 305 286 92 0 chr12 131367629 131367727 -12418728 + MER91A DNA MER1_type 90 196 0 2262 109 3 3 chr12 131367941 131368253 -12418202 - AluSx SINE Alu 0 312 1 2512 55 3 0 chr12 131368260 131368585 -12417870 - AluY SINE Alu 0 326 1 2448 100 0 0 chr12 131368595 131368905 -12417550 - AluSx SINE Alu -2 310 1 1613 185 10 22 chr12 131368905 131369219 -12417236 - AluJo SINE Alu -1 311 2 2423 100 0 0 chr12 131369768 131370078 -12416377 - AluSx SINE Alu -2 310 1 878 166 16 16 chr12 131370371 131370558 -12415897 - L1MB3 LINE L1 -33 6150 5964 2262 123 0 0 chr12 131370558 131370868 -12415587 - AluSq SINE Alu -3 310 1 1055 114 51 6 chr12 131370885 131371061 -12415394 - MSTA LTR MaLR -244 184 1 1844 141 3 28 chr12 131371068 131371352 -12415103 - AluJo SINE Alu -35 277 1 401 155 0 12 chr12 131371718 131371789 -12414666 - AluS SINE Alu -244 59 1 2420 98 3 0 chr12 131371851 131372156 -12414299 + AluSp SINE Alu 1 306 -7 674 191 49 12 chr12 131372156 131372318 -12414137 + MLT1G LTR MaLR 375 542 -48 263 221 0 52 chr12 131372491 131372568 -12413887 - L1MC4a LINE L1 -1903 5905 5833 2573 78 7 0 chr12 131372568 131372877 -12413578 + AluY SINE Alu 1 311 0 279 0 0 0 chr12 131372877 131372908 -12413547 + (TA)n Simple_repeat Simple_repeat 1 31 0 3441 197 31 1 chr12 131372923 131373627 -12412828 - L1MB7 LINE L1 -67 6117 5393 2166 117 7 0 chr12 131373858 131374157 -12412298 + AluSq SINE Alu 1 301 -12 2485 54 3 3 chr12 131374236 131374533 -12411922 - AluY SINE Alu -14 297 1 1990 151 3 7 chr12 131374565 131374870 -12411585 - AluJb SINE Alu -6 306 3 613 133 221 0 chr12 131375069 131375182 -12411273 - AluSg SINE Alu -171 139 2 2120 134 0 23 chr12 131375189 131375496 -12410959 - AluSx SINE Alu -12 300 1 2577 71 0 0 chr12 131375509 131375818 -12410637 - AluY SINE Alu -2 309 1 1991 194 92 43 chr12 131375827 131376056 -12410399 - L1MB8 LINE L1 -1 6177 5961 2353 101 3 0 chr12 131376056 131376362 -12410093 - AluSx SINE Alu -5 307 1 1991 194 92 43 chr12 131376362 131376708 -12409747 - L1MB8 LINE L1 -217 5961 5574 348 226 0 24 chr12 131377076 131377160 -12409295 + HAL1 LINE L1 2073 2154 -353 2500 75 0 0 chr12 131377207 131377500 -12408955 + AluY SINE Alu 1 293 -18 1003 107 0 29 chr12 131377638 131377778 -12408677 + AluSp SINE Alu 1 136 -177 2262 101 7 3 chr12 131377781 131378078 -12408377 + AluSg SINE Alu 1 298 -12 1021 198 45 22 chr12 131378085 131378307 -12408148 + AluJo SINE Alu 79 305 -7 582 280 142 1 chr12 131378435 131378706 -12407749 + LTR33 LTR ERVL 55 389 -132 1248 176 0 24 chr12 131378727 131378962 -12407493 + AluJo SINE Alu 87 316 0 2523 68 6 10 chr12 131378962 131379273 -12407182 + AluSp SINE Alu 1 310 -3 2229 122 0 0 chr12 131379711 131380007 -12406448 + AluSg SINE Alu 1 296 -14 2425 79 20 3 chr12 131380007 131380310 -12406145 + AluSc SINE Alu 1 308 -1 2026 120 17 7 chr12 131380346 131380637 -12405818 + AluSq SINE Alu 1 294 -19 1807 183 0 0 chr12 131380650 131380935 -12405520 + AluJb SINE Alu 16 300 -12 1983 147 0 17 chr12 131381384 131381684 -12404771 - AluJb SINE Alu -15 297 3 405 286 118 0 chr12 131381921 131382040 -12404415 + MIR SINE MIR 8 140 -122 253 230 74 141 chr12 131382079 131382114 -12404341 - MER119 DNA MER1_type -379 204 168 2314 86 3 20 chr12 131382114 131382415 -12404040 + AluSq SINE Alu 1 296 -17 253 230 74 141 chr12 131382415 131382514 -12403941 - MER119 DNA MER1_type -415 168 79 1772 180 18 3 chr12 131382522 131382806 -12403649 - AluJo SINE Alu -24 288 1 1740 232 89 33 chr12 131382833 131383372 -12403083 + MLT1K LTR MaLR 20 588 0 273 228 301 16 chr12 131383492 131383576 -12402879 + MIR SINE MIR 46 105 -157 219 69 0 0 chr12 131383576 131383605 -12402850 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1726 143 32 11 chr12 131383605 131383762 -12402693 - AluSx SINE Alu -27 285 118 197 33 33 0 chr12 131383762 131383792 -12402663 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1726 143 32 11 chr12 131383792 131383913 -12402542 - AluSx SINE Alu -194 118 1 273 228 301 16 chr12 131383913 131383950 -12402505 + MIR SINE MIR 104 203 -59 360 282 85 16 chr12 131383991 131384142 -12402313 - MIR3 SINE MIR -61 147 2 2451 84 3 0 chr12 131384158 131384455 -12402000 + AluSg SINE Alu 1 298 -12 527 241 172 0 chr12 131384522 131384667 -12401788 + MIR SINE MIR 7 176 -86 270 225 54 4 chr12 131384664 131384796 -12401659 + L2 LINE L2 2611 2806 -508 * 2395 110 0 0 chr12 131385252 131385562 -12400893 + AluSg SINE Alu 1 310 0 1656 162 3 49 chr12 131385789 131386097 -12400358 - AluJb SINE Alu -13 299 6 380 341 15 0 chr12 131386238 131386370 -12400085 + MIR SINE MIR 17 150 -58 2013 141 13 0 chr12 131386759 131387057 -12399398 - AluSg SINE Alu -8 302 1 2394 101 0 3 chr12 131387253 131387559 -12398896 + AluSc SINE Alu 1 305 -4 1908 111 52 4 chr12 131387568 131387865 -12398590 + AluSx SINE Alu 1 310 0 32 57 0 0 chr12 131389360 131389413 -12397042 + GC_rich Low_complexity Low_complexity 1 53 0 1041 71 0 35 chr12 131389528 131389703 -12396752 + AluY SINE Alu 146 315 0 458 200 18 13 chr12 131389705 131389820 -12396635 - MIR SINE MIR -86 122 6 313 284 11 0 chr12 131389840 131389935 -12396520 - MIR SINE MIR -110 152 57 1330 189 111 7 chr12 131391074 131391344 -12395111 + AluJo SINE Alu 1 298 -14 2481 74 3 0 chr12 131391352 131391648 -12394807 + AluSp SINE Alu 7 303 -10 253 87 43 0 chr12 131391655 131391701 -12394754 - L1MC4 LINE L1 -1 8041 7994 442 107 0 60 chr12 131391726 131391810 -12394645 - Alu SINE Alu -1 311 233 1348 193 67 21 chr12 131391811 131391961 -12394494 + MER82 DNA MER2_type 37 179 -474 192 77 0 0 chr12 131391961 131391987 -12394468 + (TA)n Simple_repeat Simple_repeat 2 27 0 1348 193 67 21 chr12 131391987 131392121 -12394334 + MER82 DNA MER2_type 179 334 -319 221 74 56 19 chr12 131392121 131392156 -12394299 + (TA)n Simple_repeat Simple_repeat 1 40 -16 1927 111 13 46 chr12 131392156 131392247 -12394208 - AluSq SINE Alu -17 296 204 2134 141 3 0 chr12 131392247 131392545 -12393910 - AluSq SINE Alu -14 299 1 1927 111 13 46 chr12 131392545 131392759 -12393696 - AluSq SINE Alu -109 204 1 221 74 56 19 chr12 131392759 131392777 -12393678 + (TA)n Simple_repeat Simple_repeat 40 56 0 1979 124 14 3 chr12 131392777 131393060 -12393395 - AluSx SINE Alu -26 286 1 912 189 18 81 chr12 131393062 131393234 -12393221 - AluJo SINE Alu -20 292 136 2566 66 3 0 chr12 131393234 131393535 -12392920 - AluSp SINE Alu -11 302 1 912 189 18 81 chr12 131393535 131393584 -12392871 - AluJo SINE Alu -176 136 85 254 65 0 0 chr12 131393584 131393615 -12392840 - AluSp/q SINE Alu -53 250 220 545 232 179 46 chr12 131393690 131393901 -12392554 - L1MC4 LINE L1 -167 7875 7693 2262 128 0 0 chr12 131393901 131394213 -12392242 - AluSx SINE Alu 0 312 1 545 232 179 46 chr12 131394213 131394247 -12392208 - L1MC4 LINE L1 -349 7693 7665 1495 179 102 0 chr12 131394247 131394521 -12391934 - AluJo SINE Alu -8 304 3 545 232 179 46 chr12 131394521 131394537 -12391918 - L1MC4 LINE L1 -377 7665 7578 2154 99 0 7 chr12 131394549 131394833 -12391622 + AluSg SINE Alu 1 282 -28 368 83 33 0 chr12 131394833 131394893 -12391562 + (CATA)n Simple_repeat Simple_repeat 2 63 0 306 294 43 65 chr12 131394906 131395090 -12391365 + MER102b DNA MER1_type 162 341 0 1953 129 22 0 chr12 131395126 131395398 -12391057 + AluJb SINE Alu 17 294 -18 2050 120 3 7 chr12 131395720 131396003 -12390452 - AluSx SINE Alu -30 282 1 2378 102 0 0 chr12 131396085 131396388 -12390067 - AluSx SINE Alu -9 303 1 289 248 55 27 chr12 131396501 131396664 -12389791 - MER5A DNA MER1_type -5 184 2 2249 90 0 52 chr12 131396876 131397186 -12389269 - AluSg SINE Alu -16 294 1 292 275 74 34 chr12 131397286 131397435 -12389020 + MIR SINE MIR 108 262 0 1224 81 0 0 chr12 131397645 131397794 -12388661 - AluSg/x SINE Alu -10 300 152 525 161 31 124 chr12 131397832 131397993 -12388462 - MER20 DNA MER1_type -73 146 1 414 278 139 7 chr12 131398020 131398171 -12388284 - MIR SINE MIR -83 179 9 2360 76 17 3 chr12 131398187 131398488 -12387967 + AluSg SINE Alu 1 305 -5 2213 113 3 0 chr12 131398488 131398779 -12387676 + AluSg SINE Alu 1 292 -18 363 250 57 65 chr12 131398779 131398903 -12387552 + MER5B DNA MER1_type 33 155 -23 837 145 8 0 chr12 131399073 131399197 -12387258 - FLAM_C SINE Alu -18 125 1 1915 107 32 0 chr12 131399861 131400150 -12386305 - AluSg1 SINE Alu 0 318 22 2219 125 0 0 chr12 131400176 131400471 -12385984 - AluSx SINE Alu -17 295 1 200 200 0 0 chr12 131400907 131400952 -12385503 + (GGCTG)n Simple_repeat Simple_repeat 4 48 0 1383 166 12 29 chr12 131401280 131401521 -12384934 + AluJb SINE Alu 27 263 -49 1755 100 0 0 chr12 131401521 131401741 -12384714 - AluSg SINE Alu -90 220 1 1459 165 7 37 chr12 131401745 131402042 -12384413 - L1MB5 LINE L1 0 6174 5887 2253 117 3 0 chr12 131402526 131402826 -12383629 - AluSx SINE Alu -7 305 5 1854 115 68 7 chr12 131403007 131403286 -12383169 + AluSx SINE Alu 1 296 -16 2067 127 7 3 chr12 131403360 131403672 -12382783 + AluSx SINE Alu 1 313 0 2358 72 7 3 chr12 131403681 131403974 -12382481 + AluY SINE Alu 1 294 -17 211 289 135 19 chr12 131404111 131404267 -12382188 + L2 LINE L2 2886 3059 -213 930 213 6 0 chr12 131404269 131404429 -12382026 - AluJo SINE Alu -25 287 127 1848 132 10 31 chr12 131404440 131404752 -12381703 - AluSx SINE Alu 0 306 1 239 152 0 43 chr12 131404901 131404947 -12381508 + MIR SINE MIR 56 99 -163 4608 78 18 41 chr12 131404949 131405517 -12380938 + LTR8 LTR ERV1 1 552 -139 2288 95 7 0 chr12 131405517 131405812 -12380643 + AluSp SINE Alu 1 297 -16 4608 78 18 41 chr12 131405812 131405924 -12380531 + LTR8 LTR ERV1 552 665 -26 1066 95 0 0 chr12 131405919 131406066 -12380389 + LTR8 LTR ERV1 429 575 -116 * 236 273 27 96 chr12 131406092 131406216 -12380239 + MIR SINE MIR 89 197 -65 2563 56 0 0 chr12 131406216 131406518 -12379937 + AluY SINE Alu 1 302 -9 236 273 27 96 chr12 131406518 131406580 -12379875 + MIR SINE MIR 197 262 0 297 75 0 0 chr12 131407054 131407094 -12379361 + (CA)n Simple_repeat Simple_repeat 2 41 0 2186 118 16 0 chr12 131407450 131407755 -12378700 - AluSx SINE Alu -2 310 1 313 234 7 71 chr12 131407768 131407877 -12378578 + L2 LINE L2 3160 3262 -51 2033 87 7 78 chr12 131407877 131408212 -12378243 + AluSq SINE Alu 1 313 0 313 234 7 71 chr12 131408212 131408241 -12378214 + L2 LINE L2 3262 3291 -22 2286 114 3 0 chr12 131408273 131408581 -12377874 - AluSg SINE Alu -1 309 1 2288 121 3 3 chr12 131408588 131408901 -12377554 - AluSp SINE Alu 0 313 1 1628 187 42 10 chr12 131408901 131409190 -12377265 - AluJo SINE Alu -13 299 2 713 154 0 37 chr12 131409190 131409309 -12377146 - FLAM_A SINE Alu -179 132 12 321 153 0 106 chr12 131409431 131409516 -12376939 + MIR SINE MIR 79 154 -108 2200 102 17 0 chr12 131409527 131409820 -12376635 + AluSx SINE Alu 1 298 -14 288 130 0 0 chr12 131409820 131409866 -12376589 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 1404 128 28 8 chr12 131409866 131410117 -12376338 + L1MA9 LINE L1 5814 6069 -243 1972 146 11 0 chr12 131410117 131410404 -12376051 + AluSx SINE Alu 1 290 -22 2057 105 35 0 chr12 131410406 131410691 -12375764 + AluSg SINE Alu 1 295 -15 811 132 0 0 chr12 131410692 131410798 -12375657 + AluSq/x SINE Alu 2 107 -205 * 961 119 7 7 chr12 131410797 131410940 -12375515 + AluSc SINE Alu 160 302 -7 1039 144 7 93 chr12 131410942 131411131 -12375324 + L1MA9 LINE L1 6053 6212 -100 2376 97 3 0 chr12 131411131 131411429 -12375026 - AluSp SINE Alu -14 299 1 1039 144 7 93 chr12 131411429 131411517 -12374938 + L1MA9 LINE L1 6212 6306 -6 27 0 0 0 chr12 131411682 131411709 -12374746 + AT_rich Low_complexity Low_complexity 1 27 0 502 239 157 0 chr12 131411842 131412001 -12374454 + MLT1K LTR MaLR 66 249 -339 364 253 28 19 chr12 131412041 131412225 -12374230 + MLT1K LTR MaLR 358 587 -1 206 229 390 0 chr12 131412279 131412397 -12374058 - L2 LINE L2 -191 3081 2918 1542 93 34 0 chr12 131412408 131412613 -12373842 + AluSq SINE Alu 1 212 -101 293 237 267 0 chr12 131412634 131412769 -12373686 - MLT1K LTR MaLR -406 182 12 1636 32 0 0 chr12 131413208 131413396 -12373059 - AluY SINE Alu -2 309 122 2490 83 3 0 chr12 131413413 131413715 -12372740 + AluSg SINE Alu 1 303 -7 295 226 216 0 chr12 131413864 131413966 -12372489 - LTR33A LTR ERVL -39 484 361 601 116 0 0 chr12 131414104 131414190 -12372265 + AluSx SINE Alu 31 116 -196 712 152 8 8 chr12 131414214 131414346 -12372109 - FLAM_C SINE Alu 0 133 2 1313 149 0 5 chr12 131414348 131414543 -12371912 + AluSx SINE Alu 102 295 -17 855 234 101 53 chr12 131414760 131414979 -12371476 + L2 LINE L2 2599 2806 -507 2219 117 0 13 chr12 131414979 131415287 -12371168 - AluSq SINE Alu -7 306 3 2021 134 3 3 chr12 131415291 131415581 -12370874 - AluSx SINE Alu -22 290 1 855 234 101 53 chr12 131415581 131415745 -12370710 + L2 LINE L2 2808 3015 -298 2543 66 7 0 chr12 131415745 131416047 -12370408 - AluY SINE Alu -7 304 1 1092 116 0 14 chr12 131416048 131416194 -12370261 - AluSq/x SINE Alu -168 144 1 2320 78 7 3 chr12 131416284 131416578 -12369877 + AluSp SINE Alu 1 295 -18 909 167 0 52 chr12 131416582 131416756 -12369699 + AluJo SINE Alu 127 291 -21 231 36 0 0 chr12 131417828 131417856 -12368599 + (TA)n Simple_repeat Simple_repeat 2 29 0 255 31 0 0 chr12 131417881 131417913 -12368542 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1966 119 18 11 chr12 131418833 131419119 -12367336 + AluSx SINE Alu 3 290 -22 1573 187 41 62 chr12 131419128 131419179 -12367276 + L1MB7 LINE L1 5777 5828 -356 1401 201 19 42 chr12 131419179 131419487 -12366968 + AluJo SINE Alu 1 301 -11 1573 187 41 62 chr12 131419487 131419733 -12366722 + L1MB7 LINE L1 5828 6065 -119 1593 122 0 0 chr12 131419733 131419955 -12366500 + AluSg/x SINE Alu 85 306 -6 1573 187 41 62 chr12 131419955 131420073 -12366382 + L1MB7 LINE L1 6065 6184 0 407 292 89 24 chr12 131420099 131420267 -12366188 + MIR SINE MIR 63 241 -21 1357 238 133 21 chr12 131420753 131421173 -12365282 - MLT1C LTR MaLR 0 467 1 308 376 35 0 chr12 131421258 131421399 -12365056 + MIR SINE MIR 80 225 -37 281 259 49 0 chr12 131421614 131421695 -12364760 + MIR SINE MIR 51 135 -73 907 215 23 24 chr12 131421953 131422345 -12364110 - LTR16C LTR ERVL 0 491 66 537 152 105 0 chr12 131422469 131422574 -12363881 + MLT1D LTR MaLR 9 124 -381 1490 132 0 0 chr12 131422574 131422779 -12363676 + AluJo SINE Alu 1 205 -107 444 336 22 21 chr12 131423138 131423332 -12363123 + MIR SINE MIR 1 192 -60 1158 134 0 0 chr12 131423517 131423688 -12362767 - AluSg/x SINE Alu -9 301 131 2135 123 0 16 chr12 131423688 131423867 -12362588 - AluSx SINE Alu 0 312 139 2492 68 0 0 chr12 131423867 131424175 -12362280 - AluY SINE Alu -3 308 1 2135 123 0 16 chr12 131424175 131424312 -12362143 - AluSx SINE Alu -173 139 1 820 186 0 0 chr12 131424325 131424454 -12362001 + FRAM SINE Alu 1 122 -54 432 69 0 0 chr12 131425516 131425574 -12360881 - Alu SINE Alu -260 58 1 4195 139 51 13 chr12 131425600 131425757 -12360698 - MER50 LTR ERV1 -1 733 583 2140 116 3 0 chr12 131425757 131426051 -12360404 + AluSq SINE Alu 1 295 -18 4195 139 51 13 chr12 131426051 131426077 -12360378 - MER50 LTR ERV1 -151 583 559 2052 94 30 17 chr12 131426077 131426211 -12360244 + AluSx SINE Alu 3 134 -178 2224 109 0 0 chr12 131426211 131426514 -12359941 + AluSc SINE Alu 1 303 -6 2052 94 30 17 chr12 131426514 131426677 -12359778 + AluSx SINE Alu 134 304 -8 4195 139 51 13 chr12 131426677 131427197 -12359258 - MER50 LTR ERV1 -175 559 2 2190 124 0 0 chr12 131427340 131427639 -12358816 - AluSx SINE Alu -13 299 1 577 262 170 55 chr12 131428288 131428376 -12358079 - MLT1K LTR MaLR -16 572 496 1864 102 73 0 chr12 131428376 131428650 -12357805 + AluY SINE Alu 6 299 -12 577 262 170 55 chr12 131428650 131429038 -12357417 - MLT1K LTR MaLR -92 496 41 379 278 26 9 chr12 131429147 131429262 -12357193 + MIR3 SINE MIR 12 128 -80 2591 46 0 0 chr12 131429518 131429822 -12356633 - AluY SINE Alu -7 304 1 2080 107 4 0 chr12 131429822 131430103 -12356352 - AluSx SINE Alu -30 282 1 1248 161 12 137 chr12 131430401 131430600 -12355855 + AluJb SINE Alu 1 143 -159 2210 79 7 3 chr12 131430600 131430890 -12355565 + AluSp SINE Alu 1 291 -22 1248 161 12 137 chr12 131430890 131431026 -12355429 + AluJb SINE Alu 143 294 -8 244 268 0 0 chr12 131431365 131431421 -12355034 - L2 LINE L2 -7 3265 3210 2246 125 0 0 chr12 131431478 131431790 -12354665 - AluSx SINE Alu 0 312 1 459 292 86 34 chr12 131432825 131433092 -12353363 - MLT1K LTR MaLR -238 350 70 2472 46 3 3 chr12 131433513 131433818 -12352637 - AluY SINE Alu -6 305 1 898 221 6 6 chr12 131433838 131434019 -12352436 + L1MB8 LINE L1 5986 6166 -12 258 269 39 13 chr12 131434641 131434719 -12351736 - L2 LINE L2 -6 3266 3187 2250 110 7 0 chr12 131435222 131435531 -12350924 + AluSx SINE Alu 1 311 -1 1803 155 14 3 chr12 131435780 131436071 -12350384 + AluJo SINE Alu 1 294 -18 288 0 0 0 chr12 131436072 131436104 -12350351 + (TG)n Simple_repeat Simple_repeat 2 33 0 555 310 147 22 chr12 131436106 131436467 -12349988 - L2 LINE L2 0 3313 2908 1144 242 42 36 chr12 131436476 131436832 -12349623 - MLT1B LTR MaLR -29 361 4 182 321 44 44 chr12 131437536 131437673 -12348782 - L2 LINE L2 -391 2923 2787 2087 134 0 3 chr12 131438383 131438791 -12347664 - AluSx SINE Alu 0 412 6 1879 127 45 0 chr12 131438797 131439089 -12347366 - AluSx SINE Alu -7 305 1 241 283 72 69 chr12 131439145 131439421 -12347034 - L1ME4a LINE L1 -59 6062 5786 2249 101 7 0 chr12 131440316 131440622 -12345833 - AluSx SINE Alu -4 308 1 226 202 24 83 chr12 131441533 131441701 -12344754 + (GGGTG)n Simple_repeat Simple_repeat 3 160 0 302 233 55 89 chr12 131443105 131443150 -12343305 + Charlie8 DNA MER1_type 38 83 -258 1636 145 29 42 chr12 131443150 131443314 -12343141 - AluJo SINE Alu -6 306 146 2082 97 31 7 chr12 131443314 131443479 -12342976 - AluSc SINE Alu -12 297 121 234 0 0 0 chr12 131443479 131443505 -12342950 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2082 97 31 7 chr12 131443505 131443629 -12342826 - AluSc SINE Alu -188 121 1 1636 145 29 42 chr12 131443629 131443774 -12342681 - AluJo SINE Alu -166 146 1 302 233 55 89 chr12 131443774 131443874 -12342581 + Charlie8 DNA MER1_type 83 178 -163 860 217 72 0 chr12 131443985 131444192 -12342263 - MER58A DNA MER1_type -1 223 2 212 294 9 56 chr12 131444468 131444529 -12341926 + MER5B DNA MER1_type 2 69 -120 2355 86 0 3 chr12 131444529 131444831 -12341624 + AluSg SINE Alu 1 301 -9 212 294 9 56 chr12 131444831 131444881 -12341574 + MER5B DNA MER1_type 69 120 -69 2325 80 3 3 chr12 131446414 131446715 -12339740 - AluSp SINE Alu -12 301 1 705 268 54 10 chr12 131446867 131447072 -12339383 + MIR SINE MIR 1 214 -48 232 224 41 0 chr12 131447627 131447676 -12338779 + MIR SINE MIR 95 145 -63 1087 119 0 0 chr12 131447681 131447840 -12338615 + AluJb SINE Alu 136 294 -18 450 304 134 13 chr12 131448373 131448686 -12337769 - L1MC4 LINE L1 0 8042 7692 447 333 24 12 chr12 131449084 131449252 -12337203 + MIR SINE MIR 6 175 -87 488 122 12 0 chr12 131449256 131449338 -12337117 + AluSp/q SINE Alu 228 310 -3 446 319 0 0 chr12 131449340 131449481 -12336974 - MER3 DNA MER1_type -65 144 4 415 272 84 27 chr12 131449550 131449687 -12336768 + L2 LINE L2 2638 2766 -547 2002 104 0 24 chr12 131449687 131449845 -12336610 - AluSx SINE Alu -22 290 141 2198 76 4 0 chr12 131449845 131450122 -12336333 - AluSp SINE Alu -19 294 17 2002 104 0 24 chr12 131450122 131450260 -12336195 - AluSx SINE Alu -171 141 1 415 272 84 27 chr12 131450260 131450443 -12336012 + L2 LINE L2 2766 2977 -336 2254 104 0 0 chr12 131450627 131450926 -12335529 + AluSg SINE Alu 7 305 -5 331 320 48 24 chr12 131450926 131451104 -12335351 - MIR3 SINE MIR -58 150 6 738 180 58 0 chr12 131451226 131451398 -12335057 - Tigger7 DNA MER2_type 0 2487 2306 718 97 0 0 chr12 131451398 131451491 -12334964 + AluJ/FLAM SINE Alu 1 93 -219 1043 217 65 0 chr12 131451497 131451727 -12334728 - Tigger7 DNA MER2_type -2231 256 12 2171 104 0 29 chr12 131451769 131451952 -12334503 - AluSx SINE Alu 0 312 125 2331 73 3 16 chr12 131451952 131452267 -12334188 - AluY SINE Alu 0 311 1 2261 81 0 19 chr12 131452267 131452576 -12333879 - AluY SINE Alu -8 303 1 2171 104 0 29 chr12 131452576 131452707 -12333748 - AluSx SINE Alu -185 127 6 517 268 177 57 chr12 131452877 131453111 -12333344 + L2 LINE L2 2916 3207 -106 2059 130 0 9 chr12 131453111 131453426 -12333029 + AluSx SINE Alu 1 312 0 517 268 177 57 chr12 131453426 131453542 -12332913 + L2 LINE L2 3207 3308 -5 269 157 39 0 chr12 131453849 131453900 -12332555 + MIR SINE MIR 104 156 -106 2009 121 38 0 chr12 131453976 131454266 -12332189 + AluSx SINE Alu 1 301 -11 838 154 0 0 chr12 131454277 131454407 -12332048 - FRAM SINE Alu -36 140 11 710 256 13 0 chr12 131454409 131454565 -12331890 - MIR SINE MIR -27 235 78 469 224 117 70 chr12 131454913 131455127 -12331328 + LTR33 LTR ERVL 183 406 -115 210 37 0 0 chr12 131455142 131455169 -12331286 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2135 102 0 3 chr12 131455171 131455455 -12331000 - AluSc SINE Alu -26 283 1 990 92 0 0 chr12 131455455 131455585 -12330870 - AluSq/x SINE Alu -176 136 7 268 315 210 31 chr12 131456074 131456231 -12330224 - L2 LINE L2 -81 3191 3064 1933 111 46 26 chr12 131456231 131456537 -12329918 - AluSx SINE Alu 0 312 1 268 315 210 31 chr12 131456537 131456690 -12329765 - L2 LINE L2 -208 3064 2940 504 0 0 0 chr12 131456690 131456746 -12329709 + (TG)n Simple_repeat Simple_repeat 1 56 0 268 315 210 31 chr12 131456746 131457008 -12329447 - L2 LINE L2 -332 2940 2510 790 188 0 0 chr12 131457185 131457318 -12329137 - FLAM_C SINE Alu 0 143 11 350 327 98 16 chr12 131457340 131457655 -12328800 - L1MC4 LINE L1 -61 7981 7641 1945 155 26 0 chr12 131457663 131457966 -12328489 - AluSx SINE Alu -1 311 1 752 195 0 8 chr12 131457979 131458107 -12328348 - FLAM_C SINE Alu -3 130 4 422 266 164 31 chr12 131458198 131458326 -12328129 - L1MC4 LINE L1 -1 8041 7639 247 200 0 15 chr12 131458329 131458394 -12328061 - L1MC4 LINE L1 -76 7966 7903 2227 100 0 7 chr12 131458394 131458694 -12327761 - AluSx SINE Alu -14 298 1 2326 87 0 0 chr12 131458709 131459007 -12327448 - AluY SINE Alu -13 298 1 281 82 0 0 chr12 131459012 131459061 -12327394 - Alu SINE Alu 0 302 254 278 200 0 0 chr12 131459062 131459112 -12327343 - AluS SINE Alu -239 64 15 529 283 97 40 chr12 131459142 131459492 -12326963 - L1MC4 LINE L1 -63 7979 7610 2136 111 3 13 chr12 131459496 131459802 -12326653 - AluSx SINE Alu -9 303 1 24 0 0 0 chr12 131462759 131462783 -12323672 + GC_rich Low_complexity Low_complexity 1 24 0 396 266 11 25 chr12 131462941 131463069 -12323386 + MIR SINE MIR 45 170 -63 831 140 0 22 chr12 131463313 131463449 -12323006 + FRAM SINE Alu 29 161 -15 410 296 239 23 chr12 131463570 131464227 -12322228 + L2 LINE L2 2496 3276 -37 2187 84 30 3 chr12 131464286 131464582 -12321873 + AluSx SINE Alu 1 304 -8 2693 152 48 4 chr12 131464582 131465102 -12321353 - MER50 LTR ERV1 -190 544 2 2190 124 0 0 chr12 131465245 131465544 -12320911 - AluSx SINE Alu -13 299 1 577 262 170 55 chr12 131466193 131466281 -12320174 - MLT1K LTR MaLR -16 572 496 1864 102 73 0 chr12 131466281 131466555 -12319900 + AluY SINE Alu 6 299 -12 577 262 170 55 chr12 131466555 131466943 -12319512 - MLT1K LTR MaLR -92 496 41 379 278 26 9 chr12 131467052 131467167 -12319288 + MIR3 SINE MIR 12 128 -80 2392 92 0 0 chr12 131467434 131467737 -12318718 - AluSg SINE Alu -7 303 1 330 219 61 9 chr12 131467737 131467851 -12318604 + L1MB8 LINE L1 6057 6176 -2 780 259 127 35 chr12 131467860 131468308 -12318147 + L2 LINE L2 2736 3228 -85 1276 102 59 0 chr12 131468743 131468929 -12317526 - AluSq SINE Alu -9 304 108 255 250 193 68 chr12 131469895 131469929 -12316526 - L2 LINE L2 -176 3137 3109 1647 122 16 49 chr12 131469929 131470233 -12316222 + AluJo SINE Alu 1 294 -18 255 250 193 68 chr12 131470233 131470390 -12316065 - L2 LINE L2 -204 3109 2922 1885 67 112 4 chr12 131470428 131470697 -12315758 - AluYa8 SINE Alu -12 298 1 1824 177 16 10 chr12 131471106 131471416 -12315039 - AluSx SINE Alu 0 312 1 250 308 96 19 chr12 131471692 131471796 -12314659 + Charlie8 DNA MER1_type 4 115 -2302 2104 113 0 0 chr12 131471803 131472094 -12314361 + AluSx SINE Alu 1 291 -21 1811 84 25 0 chr12 131472096 131472360 -12314095 + AluSq SINE Alu 39 308 0 488 261 43 0 chr12 131472381 131472519 -12313936 + MIR SINE MIR 15 158 -104 30 59 0 0 chr12 131473067 131473118 -12313337 + GC_rich Low_complexity Low_complexity 1 51 0 2064 123 3 3 chr12 131473320 131473620 -12312835 - AluSx SINE Alu -12 300 1 1037 181 22 64 chr12 131473620 131473933 -12312522 + L1ME1 LINE L1 5855 6160 -14 616 301 21 32 chr12 131474371 131474653 -12311802 - AluY SINE Alu -15 296 18 340 317 35 3 chr12 131475201 131475485 -12310970 + AluSp SINE Alu 1 293 -10 1326 102 0 0 chr12 131477040 131477217 -12309238 + AluSg/x SINE Alu 104 280 -32 1700 170 3 0 chr12 131477217 131477499 -12308956 + AluSx SINE Alu 29 311 -1 182 205 13 64 chr12 131477626 131477704 -12308751 - L2 LINE L2 -362 2951 2878 226 143 0 0 chr12 131478172 131478207 -12308248 - L1M3 LINE L1 -633 5547 5513 276 265 206 16 chr12 131478207 131478259 -12308196 - L2 LINE L2 -568 2746 2705 2218 98 3 0 chr12 131478259 131478555 -12307900 + AluSx SINE Alu 1 297 -15 276 265 206 16 chr12 131478555 131478691 -12307764 - L2 LINE L2 -609 2705 2522 219 168 78 0 chr12 131479788 131479842 -12306613 + MIR SINE MIR 102 156 -58 203 344 62 0 chr12 131480058 131480154 -12306301 - MIR SINE MIR -80 182 81 883 189 0 0 chr12 131480208 131480356 -12306099 + FRAM SINE Alu 2 149 -27 1945 138 0 0 chr12 131481986 131482269 -12304186 - AluSx SINE Alu -1 311 29 1523 91 0 0 chr12 131482269 131482466 -12303989 - AluSg/x SINE Alu -32 280 84 273 223 331 8 chr12 131482472 131482602 -12303853 - MIR SINE MIR -60 202 31 2272 48 45 0 chr12 131487883 131488172 -12298283 + AluSp SINE Alu 1 302 -11 203 320 80 10 chr12 131489245 131489345 -12297110 + MIR3 SINE MIR 14 120 -88 633 204 61 55 chr12 131490106 131490287 -12296168 + MER5A DNA MER1_type 8 189 0 22 56 0 0 chr12 131491186 131491222 -12295233 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr12 131491778 131491810 -12294645 + GC_rich Low_complexity Low_complexity 1 32 0 21 100 0 0 chr12 131491843 131491913 -12294542 + GC_rich Low_complexity Low_complexity 1 70 0 27 29 0 0 chr12 131494744 131494778 -12291677 + GC_rich Low_complexity Low_complexity 1 34 0 314 98 20 0 chr12 131495051 131495102 -12291353 + (GGA)n Simple_repeat Simple_repeat 2 53 0 258 105 0 0 chr12 131495189 131495227 -12291228 + (CAG)n Simple_repeat Simple_repeat 3 40 0 29 78 0 0 chr12 131495228 131495292 -12291163 + GC_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr12 131495381 131495426 -12291029 + GC_rich Low_complexity Low_complexity 1 45 0 201 74 0 0 chr12 131495431 131495458 -12290997 + (CGGG)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr12 131495567 131495597 -12290858 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 131495795 131495820 -12290635 + GC_rich Low_complexity Low_complexity 1 25 0 200 213 0 0 chr12 131496813 131496860 -12289595 + T-rich Low_complexity Low_complexity 1 47 0 285 98 0 0 chr12 131498568 131498609 -12287846 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 2200 106 3 13 chr12 131499986 131500297 -12286158 - AluSx SINE Alu -4 308 1 24 0 0 0 chr12 131503251 131503275 -12283180 + GC_rich Low_complexity Low_complexity 1 24 0 396 266 11 25 chr12 131503433 131503561 -12282894 + MIR SINE MIR 45 170 -63 249 108 0 0 chr12 131503875 131503912 -12282543 + (TG)n Simple_repeat Simple_repeat 1 37 0 940 249 75 8 chr12 131504534 131504775 -12281680 + MIR SINE MIR 3 259 -3 487 209 36 18 chr12 131504915 131505025 -12281430 + L2 LINE L2 3161 3272 0 433 301 32 19 chr12 131504988 131505144 -12281311 - MIR SINE MIR -37 225 68 * 226 237 0 40 chr12 131505365 131505441 -12281014 + C-rich Low_complexity Low_complexity 5 77 0 188 128 0 43 chr12 131505454 131505501 -12280954 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 839 159 0 0 chr12 131506269 131506395 -12280060 + FLAM_C SINE Alu 1 126 -17 379 200 67 0 chr12 131506405 131506495 -12279960 - Charlie5 DNA MER1_type -2495 117 22 1784 142 37 7 chr12 131506629 131506925 -12279530 - AluJb SINE Alu -7 305 1 2137 141 0 0 chr12 131506940 131507252 -12279203 - AluSx SINE Alu 0 312 1 201 167 0 62 chr12 131507357 131507405 -12279050 + C-rich Low_complexity Low_complexity 2 46 0 185 333 14 0 chr12 131507655 131507724 -12278731 - MIR SINE MIR -31 231 162 21 0 0 0 chr12 131508574 131508595 -12277860 + GC_rich Low_complexity Low_complexity 1 21 0 288 53 0 0 chr12 131508740 131508778 -12277677 + (GGA)n Simple_repeat Simple_repeat 2 39 0 609 289 22 22 chr12 131509174 131509399 -12277056 + L1MB5 LINE L1 5909 6133 -41 2281 103 0 0 chr12 131509406 131509708 -12276747 + AluSx SINE Alu 1 302 -10 2443 60 0 0 chr12 131509734 131510032 -12276423 + AluY SINE Alu 1 298 -13 2237 88 24 0 chr12 131510088 131510383 -12276072 + AluSq SINE Alu 1 302 -11 231 190 0 0 chr12 131510635 131510693 -12275762 + GA-rich Low_complexity Low_complexity 1 58 0 612 285 11 5 chr12 131511461 131511647 -12274808 + MER3 DNA MER1_type 7 193 -16 2438 80 0 0 chr12 131511647 131511958 -12274497 - AluY SINE Alu 0 311 1 753 229 62 5 chr12 131512028 131512220 -12274235 - MER8 DNA MER2_type -36 203 1 315 326 130 7 chr12 131512281 131512419 -12274036 - L2 LINE L2 -3 3310 3156 1157 90 12 12 chr12 131512425 131512591 -12273864 + AluSg/x SINE Alu 146 311 -1 2086 120 7 3 chr12 131512594 131512903 -12273552 + AluSx SINE Alu 2 311 -1 1603 144 94 0 chr12 131512929 131513206 -12273249 + AluJb SINE Alu 1 303 -9 268 196 0 0 chr12 131513268 131513319 -12273136 - MER103 DNA DNA -79 87 37 244 313 0 0 chr12 131513406 131513470 -12272985 - L2 LINE L2 -4 3309 3246 221 284 9 46 chr12 131514119 131514228 -12272227 + C-rich Low_complexity Low_complexity 2 106 0 186 176 0 0 chr12 131514443 131514494 -12271961 + C-rich Low_complexity Low_complexity 2 52 0 794 219 49 11 chr12 131515199 131515382 -12271073 - MIR SINE MIR -65 197 8 226 257 118 44 chr12 131515452 131515493 -12270962 - MIR SINE MIR -13 249 212 2174 118 0 0 chr12 131515493 131515789 -12270666 + AluSx SINE Alu 2 297 -15 226 257 118 44 chr12 131515789 131515883 -12270572 - MIR SINE MIR -50 212 104 1232 152 144 16 chr12 131515887 131516130 -12270325 + AluSg SINE Alu 30 303 -7 1971 151 0 19 chr12 131516755 131517073 -12269382 - AluSx SINE Alu 0 312 1 310 289 46 141 chr12 131517084 131517222 -12269233 - L2 LINE L2 -1 3312 3162 818 139 0 0 chr12 131517222 131517337 -12269118 - FLAM_C SINE Alu -17 116 2 310 289 46 141 chr12 131517337 131517679 -12268776 - L2 LINE L2 -151 3162 2878 256 271 14 0 chr12 131519347 131519417 -12267038 + MIR SINE MIR 82 152 -110 718 198 123 27 chr12 131519545 131519732 -12266723 + MER3 DNA MER1_type 5 209 0 422 278 149 26 chr12 131519830 131520024 -12266431 + MIR SINE MIR 39 256 -6 292 320 164 16 chr12 131520047 131520550 -12265905 - L2 LINE L2 -209 3063 2470 819 189 85 40 chr12 131520696 131520897 -12265558 - MER58A DNA MER1_type -13 211 2 212 310 0 58 chr12 131520899 131520986 -12265469 - L2 LINE L2 -1037 2277 2196 31 0 0 0 chr12 131521429 131521460 -12264995 + GC_rich Low_complexity Low_complexity 1 31 0 217 135 39 0 chr12 131521634 131521686 -12264769 + CT-rich Low_complexity Low_complexity 1 54 0 205 212 30 0 chr12 131522966 131523032 -12263423 + T-rich Low_complexity Low_complexity 5 72 0 2078 109 3 16 chr12 131523898 131524201 -12262254 - AluJo SINE Alu -13 299 1 264 358 67 52 chr12 131524632 131524850 -12261605 + L1MC/D LINE L1 5381 5609 -2199 2115 96 7 7 chr12 131524850 131525141 -12261314 + AluSx SINE Alu 1 291 -21 264 358 67 52 chr12 131525141 131525327 -12261128 + L1MC/D LINE L1 5609 5791 -2017 439 171 23 0 chr12 131525410 131525498 -12260957 - L2 LINE L2 0 3313 3224 801 229 11 6 chr12 131525594 131525769 -12260686 - FRAM SINE Alu -7 169 1 2038 116 3 47 chr12 131525774 131526092 -12260363 - AluSp SINE Alu -7 306 3 349 301 68 34 chr12 131526098 131526162 -12260293 - HAL1 LINE L1 -1312 1195 1135 2154 118 3 6 chr12 131526162 131526475 -12259980 - AluSx SINE Alu 0 312 1 1599 143 6 137 chr12 131526483 131526694 -12259761 - AluJb SINE Alu -1 301 151 2166 112 3 3 chr12 131526694 131526999 -12259456 - AluSx SINE Alu -7 305 1 1599 143 6 137 chr12 131526999 131527130 -12259325 - AluJb SINE Alu -151 151 4 349 301 68 34 chr12 131527130 131527202 -12259253 - HAL1 LINE L1 -1378 1129 1045 1483 157 0 16 chr12 131527417 131527659 -12258796 + AluJb SINE Alu 31 268 -44 709 251 119 0 chr12 131527729 131527948 -12258507 - MIR SINE MIR -3 259 15 1810 84 25 0 chr12 131527969 131528233 -12258222 - AluSq SINE Alu 0 308 39 2091 117 0 0 chr12 131528235 131528526 -12257929 - AluSx SINE Alu -21 291 1 250 308 96 19 chr12 131528533 131528637 -12257818 - Charlie8 DNA MER1_type -2302 115 4 1824 177 16 10 chr12 131528913 131529223 -12257232 + AluSx SINE Alu 1 312 0 1885 67 112 4 chr12 131529632 131529901 -12256554 + AluYa8 SINE Alu 1 298 -12 255 250 193 68 chr12 131529939 131530096 -12256359 + L2 LINE L2 2922 3109 -204 1670 125 13 46 chr12 131530096 131530400 -12256055 - AluJo SINE Alu -18 294 1 255 250 193 68 chr12 131530400 131530434 -12256021 + L2 LINE L2 3109 3137 -176 276 265 206 16 chr12 131531280 131531416 -12255039 + L2 LINE L2 2522 2631 -683 2226 98 3 0 chr12 131531416 131531713 -12254742 - AluSx SINE Alu -14 298 1 276 265 206 16 chr12 131531713 131531765 -12254690 + L2 LINE L2 2631 2746 -568 1172 209 36 133 chr12 131531765 131531923 -12254532 + L1MC4 LINE L1 5510 5682 -2360 1684 94 15 30 chr12 131531923 131532025 -12254430 + AluSq SINE Alu 35 137 -176 2215 87 3 26 chr12 131532025 131532334 -12254121 + AluSx SINE Alu 1 302 -10 1684 94 15 30 chr12 131532334 131532497 -12253958 + AluSq SINE Alu 137 296 -17 1172 209 36 133 chr12 131532497 131533192 -12253263 + L1MC4 LINE L1 5682 6005 -2037 2036 182 38 82 chr12 131532500 131532789 -12253666 + L1MB7 LINE L1 5602 5902 -282 2227 108 0 3 chr12 131532789 131533095 -12253360 - AluSg SINE Alu -3 307 3 2036 182 38 82 chr12 131533095 131533275 -12253180 + L1MB7 LINE L1 5902 6088 -96 1620 163 0 26 chr12 131533275 131533545 -12252910 - AluJo SINE Alu -49 263 1 1666 167 27 14 chr12 131533551 131533844 -12252611 - AluJb SINE Alu -15 297 1 2423 92 0 0 chr12 131533854 131534160 -12252295 - AluSg SINE Alu -4 306 1 2036 182 38 82 chr12 131534160 131534271 -12252184 + L1MB7 LINE L1 6102 6175 -9 780 259 127 35 chr12 131534283 131534731 -12251724 + L2 LINE L2 2736 3228 -85 1172 108 62 0 chr12 131535166 131535342 -12251113 - AluSq SINE Alu -9 304 118 1093 91 7 0 chr12 131535494 131535507 -12250948 - AluSq/x SINE Alu -163 150 139 1952 108 0 49 chr12 131535507 131535814 -12250641 - AluSc SINE Alu -17 292 1 1093 91 7 0 chr12 131535814 131535943 -12250512 - AluSq/x SINE Alu -174 139 7 450 269 22 13 chr12 131536274 131536498 -12249957 + L1ME1 LINE L1 5829 6103 -63 2013 107 3 17 chr12 131536505 131536805 -12249650 + AluSq SINE Alu 1 296 -17 1878 188 35 37 chr12 131536808 131537097 -12249358 + L1MB7 LINE L1 5602 5891 -293 2227 108 0 3 chr12 131537097 131537403 -12249052 - AluSg SINE Alu -3 307 3 1878 188 35 37 chr12 131537403 131537577 -12248878 + L1MB7 LINE L1 5891 6064 -120 1625 139 11 26 chr12 131537583 131537850 -12248605 - AluJb SINE Alu -49 263 1 2261 81 0 19 chr12 131537850 131538159 -12248296 - AluY SINE Alu -8 303 1 1018 86 0 0 chr12 131538162 131538290 -12248165 - AluSq/x SINE Alu -180 133 6 517 268 177 57 chr12 131538460 131538694 -12247761 + L2 LINE L2 2916 3207 -106 2059 130 0 9 chr12 131538694 131539009 -12247446 + AluSx SINE Alu 1 312 0 517 268 177 57 chr12 131539009 131539125 -12247330 + L2 LINE L2 3207 3308 -5 269 157 39 0 chr12 131539432 131539483 -12246972 + MIR SINE MIR 104 156 -106 2009 121 38 0 chr12 131539559 131539849 -12246606 + AluSx SINE Alu 1 301 -11 806 177 0 7 chr12 131539855 131539996 -12246459 - FRAM SINE Alu -30 146 7 703 248 13 0 chr12 131539997 131540150 -12246305 - MIR SINE MIR -30 232 78 219 168 78 0 chr12 131540605 131540659 -12245796 + MIR SINE MIR 102 156 -58 203 344 62 0 chr12 131540875 131540971 -12245484 - MIR SINE MIR -80 182 81 883 189 0 0 chr12 131541025 131541173 -12245282 + FRAM SINE Alu 2 149 -27 1945 138 0 0 chr12 131542804 131543087 -12243368 - AluSx SINE Alu -1 311 29 1536 86 0 0 chr12 131543087 131543284 -12243171 - AluSg/x SINE Alu -32 278 82 273 223 331 8 chr12 131543290 131543420 -12243035 - MIR SINE MIR -60 202 31 300 104 0 0 chr12 131545173 131545221 -12241234 + Alu SINE Alu 250 297 -5 200 172 86 35 chr12 131545257 131545315 -12241140 - MIR SINE MIR -98 164 104 1232 152 144 16 chr12 131545319 131545562 -12240893 + AluSg SINE Alu 30 303 -7 1971 151 0 19 chr12 131546187 131546505 -12239950 - AluSx SINE Alu 0 312 1 310 289 46 141 chr12 131546516 131546654 -12239801 - L2 LINE L2 -1 3312 3162 818 139 0 0 chr12 131546654 131546769 -12239686 - FLAM_C SINE Alu -17 116 2 310 289 46 141 chr12 131546769 131547111 -12239344 - L2 LINE L2 -151 3162 2878 256 271 14 0 chr12 131548779 131548849 -12237606 + MIR SINE MIR 82 152 -110 718 198 123 27 chr12 131548977 131549164 -12237291 + MER3 DNA MER1_type 5 209 0 422 278 149 26 chr12 131549262 131549456 -12236999 + MIR SINE MIR 39 256 -6 276 322 164 16 chr12 131549479 131549982 -12236473 - L2 LINE L2 -209 3063 2470 819 189 85 40 chr12 131550129 131550330 -12236125 - MER58A DNA MER1_type -13 211 2 212 310 0 58 chr12 131550332 131550419 -12236036 - L2 LINE L2 -1037 2277 2196 33 0 0 0 chr12 131550862 131550895 -12235560 + GC_rich Low_complexity Low_complexity 1 33 0 217 135 39 0 chr12 131551071 131551123 -12235332 + CT-rich Low_complexity Low_complexity 1 54 0 205 212 30 0 chr12 131552400 131552466 -12233989 + T-rich Low_complexity Low_complexity 5 72 0 2123 109 0 16 chr12 131553332 131553636 -12232819 - AluJo SINE Alu -13 299 1 264 327 63 55 chr12 131554031 131554287 -12232168 + L1MC/D LINE L1 5354 5608 -866 2115 96 7 7 chr12 131554287 131554578 -12231877 + AluSx SINE Alu 1 291 -21 264 327 63 55 chr12 131554578 131554764 -12231691 + L1MC/D LINE L1 5608 5791 -683 439 171 23 0 chr12 131554847 131554935 -12231520 - L2 LINE L2 0 3313 3224 801 229 11 6 chr12 131555031 131555206 -12231249 - FRAM SINE Alu -7 169 1 2012 119 3 47 chr12 131555211 131555529 -12230926 - AluSp SINE Alu -7 306 3 493 15 15 15 chr12 131555533 131555600 -12230855 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1983 129 16 13 chr12 131555603 131555914 -12230541 - AluSx SINE Alu 0 312 1 670 254 159 12 chr12 131556043 131556382 -12230073 + MLT1K LTR MaLR 200 588 0 513 304 96 0 chr12 131556635 131556905 -12229550 + LTR16A LTR ERVL 76 371 -79 2161 89 0 13 chr12 131556920 131557224 -12229231 + AluSg SINE Alu 1 300 -10 1017 241 11 11 chr12 131557227 131557489 -12228966 - HERVL68 LTR ERVL -1461 1576 1315 806 116 0 0 chr12 131557490 131557602 -12228853 - FRAM SINE Alu -11 165 54 910 216 57 47 chr12 131557687 131557983 -12228472 - HERVL68 LTR ERVL -1822 1215 917 2030 105 10 33 chr12 131558002 131558167 -12228288 - AluSx SINE Alu -15 297 141 2229 115 0 0 chr12 131558167 131558463 -12227992 - AluSx SINE Alu -14 298 3 2030 105 10 33 chr12 131558463 131558601 -12227854 - AluSx SINE Alu -171 141 1 962 156 0 7 chr12 131558608 131558762 -12227693 - FRAM SINE Alu -25 151 1 2020 132 3 0 chr12 131559346 131559642 -12226813 - AluSx SINE Alu -15 297 1 378 301 73 14 chr12 131559797 131559944 -12226511 + MIR SINE MIR 17 171 -72 193 386 0 57 chr12 131559951 131560039 -12226416 + MIR SINE MIR 12 94 -168 462 251 227 0 chr12 131560058 131560238 -12226217 - MIR SINE MIR 0 262 41 232 265 88 66 chr12 131560431 131560567 -12225888 + MIR3 SINE MIR 48 186 -22 1960 117 3 71 chr12 131561035 131561361 -12225094 + AluSx SINE Alu 1 304 -8 279 271 0 0 chr12 131561399 131561469 -12224986 - L3b LINE CR1 -194 1389 1320 1693 110 0 0 chr12 131562224 131562451 -12224004 + AluSg/x SINE Alu 85 311 -1 189 234 0 0 chr12 131563440 131563487 -12222968 + MIR SINE MIR 109 155 -107 1827 83 4 0 chr12 131563520 131563749 -12222706 - AluSp SINE Alu -1 312 83 2250 125 3 0 chr12 131563773 131564084 -12222371 - AluSx SINE Alu 0 312 1 667 274 135 10 chr12 131564139 131564347 -12222108 + MIR SINE MIR 8 241 -21 273 208 113 48 chr12 131564389 131564526 -12221929 - MIR3 SINE MIR -49 159 5 180 243 0 0 chr12 131564529 131564566 -12221889 + MIR SINE MIR 113 149 -113 278 264 41 41 chr12 131565035 131565156 -12221299 + MIR SINE MIR 6 126 -136 2197 101 0 24 chr12 131565254 131565552 -12220903 - AluY SINE Alu -20 291 1 2173 112 30 0 chr12 131565555 131565858 -12220597 - AluSx SINE Alu 0 312 1 2535 50 20 0 chr12 131565870 131566169 -12220286 - AluY SINE Alu -2 309 5 2350 111 8 0 chr12 131566173 131566532 -12219923 - L1PA11 LINE L1 -8 6166 5805 311 158 20 158 chr12 131566557 131566590 -12219865 + MIR SINE MIR 162 198 -64 2283 101 23 13 chr12 131566590 131566896 -12219559 + AluSx SINE Alu 3 311 -1 311 158 20 158 chr12 131566896 131566963 -12219492 + MIR SINE MIR 198 248 -14 940 122 0 0 chr12 131567050 131567181 -12219274 + FLAM_C SINE Alu 1 131 -12 1933 165 0 0 chr12 131567200 131567491 -12218964 + AluJo SINE Alu 1 291 -21 2814 6 0 43 chr12 131567497 131567844 -12218611 + AluY SINE Alu 1 333 0 23 54 0 0 chr12 131567848 131567885 -12218570 + AT_rich Low_complexity Low_complexity 1 37 0 2159 100 10 14 chr12 131567896 131568187 -12218268 + AluSx SINE Alu 21 310 -2 1978 95 3 65 chr12 131568226 131568358 -12218097 + AluSx SINE Alu 21 160 -152 2439 81 7 0 chr12 131568358 131568654 -12217801 + AluSp SINE Alu 1 298 -15 1978 95 3 65 chr12 131568654 131568827 -12217628 + AluSx SINE Alu 160 307 -5 327 200 0 0 chr12 131568827 131568882 -12217573 + Alu SINE Alu 1 55 -248 1276 109 0 0 chr12 131568882 131569047 -12217408 + AluSg/x SINE Alu 135 299 -11 1276 109 0 0 chr12 131569193 131569358 -12217097 - AluSg/x SINE Alu -11 299 135 327 200 0 0 chr12 131569358 131569413 -12217042 - Alu SINE Alu -248 55 1 1954 98 3 65 chr12 131569413 131569586 -12216869 - AluSx SINE Alu -5 307 160 2439 81 7 0 chr12 131569586 131569882 -12216573 - AluSp SINE Alu -15 298 1 1954 98 3 65 chr12 131569882 131570014 -12216441 - AluSx SINE Alu -152 160 21 2159 100 10 14 chr12 131570053 131570344 -12216111 - AluSx SINE Alu -2 310 21 23 54 0 0 chr12 131570355 131570392 -12216063 + AT_rich Low_complexity Low_complexity 1 37 0 2557 10 0 47 chr12 131570396 131570741 -12215714 - AluY SINE Alu 0 331 1 1933 165 0 0 chr12 131570747 131571038 -12215417 - AluJo SINE Alu -21 291 1 940 122 0 0 chr12 131571057 131571188 -12215267 - FLAM_C SINE Alu -12 131 1 317 160 20 150 chr12 131571275 131571341 -12215114 - MIR SINE MIR -14 248 198 2291 101 23 13 chr12 131571341 131571648 -12214807 - AluSx SINE Alu 0 312 3 317 160 20 150 chr12 131571648 131571681 -12214774 - MIR SINE MIR -64 198 162 2350 111 8 0 chr12 131571706 131572065 -12214390 + L1PA11 LINE L1 5805 6166 -8 2544 47 20 0 chr12 131572069 131572368 -12214087 + AluY SINE Alu 5 309 -2 2202 109 30 0 chr12 131572380 131572683 -12213772 + AluSx SINE Alu 1 312 0 2197 101 0 24 chr12 131572686 131572984 -12213471 + AluY SINE Alu 1 291 -20 278 264 41 41 chr12 131573082 131573203 -12213252 - MIR SINE MIR -136 126 6 199 203 0 0 chr12 131573672 131573709 -12212746 - MIR SINE MIR -113 149 114 273 208 113 48 chr12 131573712 131573849 -12212606 + MIR3 SINE MIR 5 159 -49 667 274 135 10 chr12 131573891 131574099 -12212356 - MIR SINE MIR -21 241 8 2250 125 3 0 chr12 131574154 131574465 -12211990 + AluSx SINE Alu 1 312 0 1840 75 4 0 chr12 131574489 131574715 -12211740 + AluSp SINE Alu 83 309 -4 189 234 0 0 chr12 131574753 131574800 -12211655 - MIR SINE MIR -107 155 109 1693 110 0 0 chr12 131575789 131576016 -12210439 - AluSg/x SINE Alu -1 309 83 276 271 0 0 chr12 131576770 131576840 -12209615 + L3b LINE CR1 1320 1389 -194 2057 117 3 71 chr12 131576878 131577204 -12209251 - AluSx SINE Alu -8 304 1 438 245 227 1 chr12 131578001 131578181 -12208274 + MIR SINE MIR 41 262 0 351 299 75 15 chr12 131578295 131578429 -12208026 - MIR SINE MIR -91 171 30 2112 132 3 0 chr12 131578597 131578893 -12207562 + AluSx SINE Alu 1 297 -15 1006 156 0 7 chr12 131579477 131579631 -12206824 + FRAM SINE Alu 1 151 -25 2072 103 17 33 chr12 131579638 131579774 -12206681 + AluSx SINE Alu 1 138 -174 2349 114 0 0 chr12 131579774 131580071 -12206384 + AluSx SINE Alu 3 299 -13 2072 103 17 33 chr12 131580071 131580236 -12206219 + AluSx SINE Alu 138 297 -15 1181 219 131 37 chr12 131580255 131580629 -12205826 + HERVL68 LTR ERVL 917 1325 -1712 841 116 0 0 chr12 131580636 131580748 -12205707 + FRAM SINE Alu 54 165 -11 1076 241 11 11 chr12 131580749 131581011 -12205444 + HERVL68 LTR ERVL 1315 1576 -1461 2408 89 3 0 chr12 131581014 131581316 -12205139 - AluSq SINE Alu -10 303 1 586 59 0 79 chr12 131581316 131581417 -12205038 - AluY SINE Alu -3 308 216 207 0 0 0 chr12 131581417 131581440 -12205015 + (T)n Simple_repeat Simple_repeat 1 23 0 2073 90 0 0 chr12 131581440 131581695 -12204760 - AluY SINE Alu -55 256 2 2056 136 7 3 chr12 131581706 131582000 -12204455 - AluSx SINE Alu -17 295 1 1886 210 42 52 chr12 131582001 131582350 -12204105 + HERVL68 LTR ERVL 1572 1916 -1121 930 199 0 0 chr12 131582350 131582516 -12203939 + FRAM SINE Alu 1 166 0 1886 210 42 52 chr12 131582516 131582662 -12203793 + HERVL68 LTR ERVL 1916 2062 -975 2128 102 10 57 chr12 131582662 131582976 -12203479 + AluSx SINE Alu 1 299 -13 1949 166 0 7 chr12 131582987 131583289 -12203166 + AluJo SINE Alu 1 300 -12 1956 129 11 0 chr12 131583290 131583568 -12202887 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr12 131583573 131583597 -12202858 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2291 81 0 17 chr12 131583602 131583899 -12202556 + AluY SINE Alu 5 296 -15 1308 126 0 0 chr12 131583903 131584077 -12202378 - AluSx SINE Alu -117 195 22 1730 119 20 0 chr12 131584089 131584382 -12202073 - L1MB3 LINE L1 -286 5897 5599 2270 102 14 0 chr12 131584418 131584711 -12201744 - AluSx SINE Alu -15 297 1 182 182 0 0 chr12 131584728 131584761 -12201694 - L2 LINE L2 -846 2468 2436 1205 155 72 0 chr12 131584765 131585013 -12201442 - AluJb SINE Alu 0 337 76 189 107 0 0 chr12 131585116 131585144 -12201311 + (A)n Simple_repeat Simple_repeat 1 28 0 432 219 148 117 chr12 131585165 131585238 -12201217 + L1MC4a LINE L1 5732 5801 -2007 1914 140 11 0 chr12 131585238 131585516 -12200939 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr12 131585521 131585545 -12200910 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2480 68 0 13 chr12 131585550 131585858 -12200597 + AluY SINE Alu 5 308 -3 432 219 148 117 chr12 131585858 131585968 -12200487 + L1MC4a LINE L1 5807 5933 -1875 1217 169 20 74 chr12 131586287 131586600 -12199855 - L1ME1 LINE L1 -14 6160 5859 2176 123 0 7 chr12 131586600 131586902 -12199553 + AluSx SINE Alu 1 300 -12 1217 169 20 74 chr12 131586902 131586932 -12199523 - L1ME1 LINE L1 -315 5859 5829 226 158 0 123 chr12 131586937 131587017 -12199438 - AluJo SINE Alu 0 302 244 878 161 0 97 chr12 131587017 131587053 -12199402 - AluJo SINE Alu -144 168 130 2161 120 0 23 chr12 131587053 131587352 -12199103 - AluSx SINE Alu -19 293 2 878 161 0 97 chr12 131587352 131587501 -12198954 - AluJo SINE Alu -182 130 1 228 222 0 0 chr12 131587506 131587560 -12198895 - L1ME1 LINE L1 -338 5826 5773 851 194 41 18 chr12 131587570 131587740 -12198715 + FRAM SINE Alu 1 170 -6 718 144 121 0 chr12 131587867 131588023 -12198432 - AluSg/x SINE Alu 0 306 135 2255 131 0 3 chr12 131588038 131588351 -12198104 - AluSx SINE Alu 0 312 1 664 189 34 102 chr12 131588351 131588405 -12198050 - L1ME1 LINE L1 -814 5332 5276 1451 176 43 50 chr12 131588405 131588602 -12197853 - AluJo SINE Alu -4 308 112 2060 135 16 3 chr12 131588602 131588905 -12197550 + AluSq SINE Alu 1 307 -6 1451 176 43 50 chr12 131588905 131589008 -12197447 - AluJo SINE Alu -200 112 10 664 189 34 102 chr12 131589008 131589109 -12197346 - L1ME1 LINE L1 -870 5276 5200 1910 102 16 0 chr12 131589109 131589355 -12197100 - AluSq SINE Alu -63 250 1 664 189 34 102 chr12 131589355 131589462 -12196993 - L1ME1 LINE L1 -946 5200 5087 742 178 0 0 chr12 131589468 131589607 -12196848 - FLAM_C SINE Alu 0 140 2 513 186 21 64 chr12 131589746 131589886 -12196569 - MIR SINE MIR -12 250 117 1209 121 6 0 chr12 131589890 131590055 -12196400 + AluSg/x SINE Alu 135 300 -12 2300 100 7 3 chr12 131590126 131590426 -12196029 - AluSp SINE Alu -12 301 1 1779 165 0 11 chr12 131590632 131590911 -12195544 + AluJb SINE Alu 23 298 -14 180 284 30 15 chr12 131591302 131591369 -12195086 + MIR SINE MIR 82 149 -59 2322 64 7 30 chr12 131591482 131591780 -12194675 + AluSg1 SINE Alu 1 291 -18 387 100 14 0 chr12 131592822 131592892 -12193563 - L1PA14 LINE L1 0 6161 6091 301 289 155 14 chr12 131593632 131593774 -12192681 + MIR SINE MIR 35 196 -66 2443 90 0 0 chr12 131593866 131594165 -12192290 - AluSg SINE Alu -11 299 1 1205 101 0 6 chr12 131594346 131594514 -12191941 + AluY SINE Alu 138 304 -7 988 169 11 11 chr12 131594515 131594692 -12191763 - MSTB LTR MaLR -249 177 1 794 131 46 0 chr12 131594694 131594824 -12191631 - MLT1A1 LTR MaLR -229 136 1 552 262 123 40 chr12 131594876 131595128 -12191327 + MLT1J LTR MaLR 239 511 0 1692 113 84 35 chr12 131595198 131595509 -12190946 + MER4B LTR ERV1 9 334 -276 307 247 11 45 chr12 131596606 131596695 -12189760 - MIR3 SINE MIR -13 195 110 1281 183 0 48 chr12 131598834 131599064 -12187391 - AluJo SINE Alu -92 220 2 1431 132 5 0 chr12 131599073 131599285 -12187170 - AluSq SINE Alu -10 303 91 1877 202 62 28 chr12 131599288 131599509 -12186946 - L1M4 LINE L1 -1009 5137 4925 1963 144 16 23 chr12 131599509 131599815 -12186640 - AluJb SINE Alu -8 304 1 1877 202 62 28 chr12 131599815 131600094 -12186361 - L1M4 LINE L1 -1221 4925 4620 195 42 0 0 chr12 131600325 131600349 -12186106 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 2054 119 0 0 chr12 131600351 131600620 -12185835 - AluSx SINE Alu -41 271 3 2244 87 0 7 chr12 131600719 131601035 -12185420 - AluY SINE Alu 0 311 1 579 293 59 21 chr12 131601048 131601338 -12185117 - L1ME4a LINE L1 -197 5924 5624 291 223 80 69 chr12 131601736 131601911 -12184544 + L1 LINE L1 3205 3381 -2765 21 36 0 0 chr12 131602008 131602036 -12184419 + AT_rich Low_complexity Low_complexity 1 28 0 187 286 16 0 chr12 131602264 131602327 -12184128 - L3 LINE CR1 -341 1236 1173 1821 96 117 33 chr12 131602588 131602921 -12183534 + MER4E LTR ERV1 1 361 -418 1261 98 82 16 chr12 131602925 131603109 -12183346 + AluSg SINE Alu 1 196 -114 2417 85 12 26 chr12 131603139 131603252 -12183203 + MER4E LTR ERV1 352 465 -301 2043 130 18 0 chr12 131603252 131603536 -12182919 - AluSx SINE Alu -23 289 1 2417 85 12 26 chr12 131603536 131603857 -12182598 + MER4E LTR ERV1 465 766 0 2219 107 3 3 chr12 131604806 131604967 -12181488 - AluSx SINE Alu -14 298 135 2406 43 20 10 chr12 131604967 131605268 -12181187 - AluY SINE Alu -7 304 1 2219 107 3 3 chr12 131605268 131605404 -12181051 - AluSx SINE Alu -176 136 1 2440 105 0 0 chr12 131605416 131605721 -12180734 - AluSq SINE Alu -8 305 1 319 143 14 14 chr12 131606029 131606099 -12180356 + GA-rich Low_complexity Low_complexity 3 72 0 1972 144 10 26 chr12 131606380 131606685 -12179770 - AluSq SINE Alu -13 300 1 2082 90 7 11 chr12 131606693 131606971 -12179484 - AluSq SINE Alu -8 305 29 216 324 127 28 chr12 131606986 131607128 -12179327 - L2 LINE L2 -89 3183 3028 2607 63 0 19 chr12 131607367 131607684 -12178771 - AluY SINE Alu 0 311 1 236 167 0 19 chr12 131607706 131607760 -12178695 + C-rich Low_complexity Low_complexity 2 54 0 1698 156 11 8 chr12 131607773 131608036 -12178419 - AluJb SINE Alu -36 276 13 2231 101 7 17 chr12 131608707 131609003 -12177452 - AluSx SINE Alu -19 293 1 2424 76 10 0 chr12 131609015 131609317 -12177138 - AluSq SINE Alu -8 305 1 240 183 49 24 chr12 131609518 131609600 -12176855 + CT-rich Low_complexity Low_complexity 5 88 0 191 364 0 0 chr12 131609980 131610046 -12176409 + MIR SINE MIR 186 251 -11 2182 102 0 59 chr12 131610430 131610753 -12175702 - AluY SINE Alu -7 304 1 385 176 162 0 chr12 131610753 131610827 -12175628 - FLAM_A SINE Alu -10 123 38 194 61 82 20 chr12 131610853 131610902 -12175553 + CT-rich Low_complexity Low_complexity 4 55 0 1793 173 0 3 chr12 131610904 131611216 -12175239 - AluJo SINE Alu -1 311 1 1978 111 7 4 chr12 131611251 131611551 -12174904 + AluSx SINE Alu 1 301 0 1997 117 10 3 chr12 131611886 131612185 -12174270 - AluSx SINE Alu -11 301 1 276 295 0 0 chr12 131612201 131612279 -12174176 - L1ME LINE L1 -349 5772 5695 21 0 0 0 chr12 131612936 131612957 -12173498 + AT_rich Low_complexity Low_complexity 1 21 0 372 43 0 0 chr12 131613207 131613253 -12173202 + (TA)n Simple_repeat Simple_repeat 2 47 0 1811 152 3 0 chr12 131613253 131613543 -12172912 - AluJb SINE Alu -21 291 1 247 70 47 0 chr12 131613543 131613586 -12172869 - L1MC2 LINE L1 -15 6329 6285 1910 121 3 35 chr12 131613587 131613901 -12172554 + AluSc SINE Alu 1 304 -5 2243 98 0 0 chr12 131614590 131614886 -12171569 + AluSg SINE Alu 1 296 -14 1824 114 0 48 chr12 131614905 131615195 -12171260 + AluSx SINE Alu 5 280 -32 1037 74 0 13 chr12 131615208 131615357 -12171098 + (GGGGA)n Simple_repeat Simple_repeat 5 151 0 1393 176 115 0 chr12 131615408 131615686 -12170769 + AluJb SINE Alu 1 310 -2 929 262 147 59 chr12 131615687 131616364 -12170091 - L1MC4a LINE L1 -70 6051 5315 386 137 72 196 chr12 131616485 131616579 -12169876 + L1MB5 LINE L1 6041 6110 -64 1883 92 31 20 chr12 131616579 131616871 -12169584 - AluSx SINE Alu -17 295 1 386 137 72 196 chr12 131616871 131616929 -12169526 + L1MB5 LINE L1 6110 6174 0 306 0 0 0 chr12 131617315 131617349 -12169106 + (CAA)n Simple_repeat Simple_repeat 3 36 0 234 128 0 0 chr12 131617461 131617500 -12168955 + (TGG)n Simple_repeat Simple_repeat 1 39 0 182 217 250 11 chr12 131617649 131617741 -12168714 + MIR3 SINE MIR 12 125 -83 1088 281 158 23 chr12 131617977 131618951 -12167504 + L2 LINE L2 2174 3275 -38 350 239 34 60 chr12 131619122 131619239 -12167216 + MIR SINE MIR 44 157 -105 601 286 48 29 chr12 131619704 131619914 -12166541 - MIR SINE MIR -16 246 33 480 77 0 0 chr12 131620072 131620137 -12166318 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 441 190 17 9 chr12 131620150 131620266 -12166189 + GA-rich Low_complexity Low_complexity 2 118 0 213 250 193 45 chr12 131620623 131620711 -12165744 - L2 LINE L2 0 3272 3172 1939 116 28 0 chr12 131620982 131621267 -12165188 + AluSx SINE Alu 1 293 -19 1684 137 13 42 chr12 131621348 131621654 -12164801 - AluJb SINE Alu -15 297 1 1042 222 4 21 chr12 131622106 131622345 -12164110 - AluJo SINE Alu -77 235 1 283 240 147 0 chr12 131622594 131622669 -12163786 - L2 LINE L2 -3 3310 3225 2547 46 0 0 chr12 131623776 131624078 -12162377 - AluY SINE Alu -9 302 1 348 272 99 25 chr12 131624465 131624627 -12161828 - MIR SINE MIR 0 262 89 449 178 51 51 chr12 131624633 131624705 -12161750 + MER53 DNA DNA 3 77 -112 2219 115 0 0 chr12 131624705 131625018 -12161437 + AluSq SINE Alu 1 313 0 449 178 51 51 chr12 131625018 131625063 -12161392 + MER53 DNA DNA 76 120 -69 602 268 82 5 chr12 131625940 131626134 -12160321 - MIR SINE MIR -4 258 50 2015 97 31 0 chr12 131626192 131626480 -12159975 - AluSx SINE Alu -15 297 1 802 123 15 23 chr12 131626835 131626965 -12159490 - FRAM SINE Alu 0 40 1 811 164 8 0 chr12 131626969 131627097 -12159358 - FLAM_C SINE Alu -10 133 5 25 0 0 0 chr12 131627110 131627135 -12159320 + AT_rich Low_complexity Low_complexity 1 25 0 3517 183 11 22 chr12 131627994 131628638 -12157817 - MER82 DNA MER2_type -9 644 8 1668 161 3 23 chr12 131629067 131629366 -12157089 - AluJo SINE Alu -15 297 5 2328 64 0 14 chr12 131629468 131629764 -12156691 + AluY SINE Alu 1 292 -19 239 118 0 0 chr12 131630250 131630284 -12156171 - MER82 DNA MER2_type -453 200 167 1975 89 0 7 chr12 131630284 131630553 -12155902 - AluSx SINE Alu -45 267 1 1848 172 0 0 chr12 131630940 131631243 -12155212 + AluJb SINE Alu 1 303 -9 2068 111 0 10 chr12 131631248 131631546 -12154909 + AluSx SINE Alu 7 301 -11 2706 170 74 27 chr12 131631620 131632173 -12154282 - L1MB5 LINE L1 0 6174 5596 1628 160 0 41 chr12 131632181 131632502 -12153953 - AluJo SINE Alu 0 309 1 729 186 0 8 chr12 131632636 131632760 -12153695 + FLAM_A SINE Alu 1 123 -10 23 0 0 0 chr12 131632822 131632845 -12153610 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr12 131633180 131633209 -12153246 + AT_rich Low_complexity Low_complexity 1 29 0 1995 131 7 0 chr12 131633364 131633662 -12152793 - AluSx SINE Alu -12 300 1 191 36 36 0 chr12 131633694 131633722 -12152733 + (TAA)n Simple_repeat Simple_repeat 2 30 0 597 132 104 9 chr12 131634513 131634647 -12151808 + FLAM_C SINE Alu 1 144 0 857 226 77 96 chr12 131634768 131635221 -12151234 + L1ME LINE L1 805 1281 -4980 1519 169 71 8 chr12 131635221 131635516 -12150939 + AluJb SINE Alu 1 312 0 857 226 77 96 chr12 131635516 131635735 -12150720 + L1ME LINE L1 1281 1503 -4758 811 221 145 28 chr12 131635727 131636016 -12150439 + L1ME1 LINE L1 5674 5996 -170 * 582 235 56 139 chr12 131636017 131636136 -12150319 - L2 LINE L2 -498 2816 2689 2269 96 0 10 chr12 131636136 131636450 -12150005 + AluY SINE Alu 1 311 0 2238 97 0 7 chr12 131636459 131636769 -12149686 + AluSc SINE Alu 1 308 -1 582 235 56 139 chr12 131636769 131636962 -12149493 - L2 LINE L2 -633 2681 2521 1733 144 14 3 chr12 131637019 131637304 -12149151 + AluJb SINE Alu 1 288 -24 1652 209 14 3 chr12 131637349 131637707 -12148748 + L1 LINE L1 4281 4642 -1504 237 147 0 0 chr12 131637707 131637741 -12148714 + Charlie5 DNA MER1_type 165 198 -2414 305 228 0 0 chr12 131637900 131637957 -12148498 + L2 LINE L2 3211 3267 -5 2233 81 3 31 chr12 131638376 131638697 -12147758 + AluSp SINE Alu 1 312 -1 2062 128 3 0 chr12 131638771 131639069 -12147386 - AluSx SINE Alu -13 299 1 1030 189 9 0 chr12 131639668 131640005 -12146450 + L1MB5 LINE L1 5770 6165 -9 544 254 74 84 chr12 131640172 131640466 -12145989 + L1ME4a LINE L1 5510 5805 -316 1865 168 0 0 chr12 131640466 131640770 -12145685 + AluJb SINE Alu 1 304 -8 2140 105 7 3 chr12 131640775 131641081 -12145374 + AluSq SINE Alu 7 313 0 544 254 74 84 chr12 131641081 131641173 -12145282 + L1ME4a LINE L1 5809 5898 -223 183 80 0 0 chr12 131641192 131641217 -12145238 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr12 131641547 131641570 -12144885 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 217 326 35 23 chr12 131642865 131642951 -12143504 - L2 LINE L2 -556 2758 2672 2013 101 13 27 chr12 131643101 131643399 -12143056 - AluSx SINE Alu -18 294 1 546 229 34 120 chr12 131643399 131643666 -12142789 - L1MC4 LINE L1 -393 7649 7406 491 216 184 53 chr12 131643695 131643885 -12142570 + MIR SINE MIR 48 262 0 221 283 0 0 chr12 131643920 131643973 -12142482 + L2 LINE L2 3249 3301 -12 570 180 7 65 chr12 131643982 131644121 -12142334 - MIR SINE MIR -87 175 45 252 241 0 19 chr12 131644231 131644285 -12142170 + L2 LINE L2 3259 3311 -2 506 248 14 35 chr12 131644915 131645056 -12141399 - MIR SINE MIR -2 260 123 916 130 0 0 chr12 131645113 131645244 -12141211 - FLAM_C SINE Alu -11 132 2 477 234 241 0 chr12 131645265 131645406 -12141049 - MER5A DNA MER1_type -6 183 9 287 304 22 11 chr12 131645419 131645511 -12140944 - MIR SINE MIR -110 152 60 2104 111 3 0 chr12 131645645 131645942 -12140513 - AluSx SINE Alu -12 300 3 941 156 6 22 chr12 131646023 131646041 -12140414 - L1MB7 LINE L1 -325 5841 5824 2241 63 3 0 chr12 131646041 131646357 -12140098 - AluY SINE Alu 0 311 1 941 156 6 22 chr12 131646357 131646532 -12139923 - L1MB7 LINE L1 -342 5824 5654 188 344 52 0 chr12 131646532 131646628 -12139827 - MIR SINE MIR -83 179 79 205 320 107 0 chr12 131646809 131646884 -12139571 + L2 LINE L2 3231 3313 0 2027 176 22 6 chr12 131647502 131647861 -12138594 - MLT1A1 LTR MaLR 0 365 1 262 281 168 20 chr12 131647915 131648091 -12138364 + L2 LINE L2 2882 3090 -223 435 183 0 0 chr12 131648122 131648204 -12138251 - AluJo SINE Alu -3 309 228 366 107 0 0 chr12 131648210 131648266 -12138189 - AluJo SINE Alu -162 140 85 2194 96 0 0 chr12 131648669 131648962 -12137493 + AluY SINE Alu 1 293 -18 926 172 6 0 chr12 131648972 131649141 -12137314 + FRAM SINE Alu 1 170 -6 274 231 31 31 chr12 131649303 131649368 -12137087 - MIR SINE MIR -60 148 91 2261 70 0 3 chr12 131649468 131649780 -12136675 + AluSq SINE Alu 1 311 0 2196 84 10 0 chr12 131649895 131650192 -12136263 - AluSp SINE Alu -13 300 1 439 155 78 78 chr12 131650195 131650215 -12136240 + MER63 DNA MER1_type 637 656 -405 809 210 61 83 chr12 131650215 131650444 -12136011 - MER58A DNA MER1_type 0 224 1 439 155 78 78 chr12 131650444 131650526 -12135929 + MER63 DNA MER1_type 655 739 -322 1863 170 0 0 chr12 131650546 131650858 -12135597 - AluJb SINE Alu 0 312 1 680 218 0 0 chr12 131650971 131651095 -12135360 + FLAM_C SINE Alu 1 124 -9 1793 144 13 0 chr12 131651162 131651461 -12134994 + AluSq SINE Alu 1 303 -10 2186 89 0 32 chr12 131651934 131652249 -12134206 + AluSx SINE Alu 1 305 -7 454 170 192 2 chr12 131652317 131652443 -12134012 - MIR SINE MIR -63 145 30 2004 118 0 3 chr12 131652583 131652870 -12133585 + AluSx SINE Alu 1 286 -26 526 259 71 24 chr12 131652888 131653058 -12133397 - Charlie8 DNA MER1_type -2143 274 97 1204 149 9 23 chr12 131653077 131653292 -12133163 + L1MB5 LINE L1 5914 6125 -49 411 116 139 12 chr12 131653378 131653464 -12132991 - L1ME3A LINE L1 -8 6162 6066 2144 116 10 0 chr12 131653476 131653779 -12132676 - AluSx SINE Alu -4 308 3 1803 158 0 3 chr12 131653799 131654097 -12132358 - AluJo SINE Alu -5 307 11 1847 114 29 0 chr12 131654135 131654408 -12132047 + AluSq SINE Alu 1 281 -32 203 79 26 0 chr12 131654408 131654446 -12132009 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 411 98 0 0 chr12 131654586 131654647 -12131808 + (TTCTC)n Simple_repeat Simple_repeat 4 64 0 937 168 31 0 chr12 131654653 131654814 -12131641 - FRAM SINE Alu 0 166 1 1590 163 11 0 chr12 131655010 131655280 -12131175 + AluJb SINE Alu 1 273 -39 516 260 11 11 chr12 131655392 131655760 -12130695 + A-rich Low_complexity Low_complexity 1 368 0 1034 157 0 43 chr12 131655766 131655980 -12130475 + AluJb SINE Alu 105 310 0 1725 184 0 7 chr12 131655985 131656294 -12130161 + AluJo SINE Alu 1 307 -5 581 200 100 0 chr12 131656297 131656437 -12130018 + L1MB7 LINE L1 5758 5911 -273 288 240 70 20 chr12 131656471 131656571 -12129884 - L2 LINE L2 -1339 1975 1871 1815 197 128 0 chr12 131656811 131657218 -12129237 + MLT1C LTR MaLR 5 463 -4 182 265 10 71 chr12 131657764 131657834 -12128621 - MER5C DNA MER1_type 0 324 260 1611 140 49 21 chr12 131657834 131658119 -12128336 - AluJo SINE Alu -19 293 1 182 265 10 71 chr12 131658119 131658146 -12128309 - MER5C DNA MER1_type -64 260 233 402 246 51 25 chr12 131658161 131658279 -12128176 - MER5C DNA MER1_type -203 121 1 1005 168 5 8 chr12 131658653 131659023 -12127432 + L1MC3 LINE L1 7366 7785 0 1043 150 4 90 chr12 131659038 131659190 -12127265 + AluJo SINE Alu 4 135 -177 1676 185 18 0 chr12 131659190 131659466 -12126989 + AluJo SINE Alu 1 281 -31 180 280 28 131 chr12 131660424 131660460 -12125995 + L2 LINE L2 2617 2655 -659 1865 157 0 33 chr12 131660460 131660765 -12125690 - AluJo SINE Alu -17 295 1 180 280 28 131 chr12 131660765 131660835 -12125620 + L2 LINE L2 2655 2712 -602 927 268 146 17 chr12 131660870 131661288 -12125167 + L2 LINE L2 2842 3313 0 367 239 64 9 chr12 131661923 131662032 -12124423 + MIR SINE MIR 74 188 -74 2203 99 0 0 chr12 131662680 131662953 -12123502 + AluSx SINE Alu 1 273 -39 285 158 0 0 chr12 131662953 131663010 -12123445 + L1MB2 LINE L1 6115 6171 0 243 98 0 0 chr12 131663013 131663054 -12123401 + L1MB7 LINE L1 6125 6165 -19 631 150 45 1 chr12 131663227 131663244 -12123211 + L1MC2 LINE L1 5949 5964 -380 2138 132 0 3 chr12 131663244 131663540 -12122915 + AluSx SINE Alu 1 295 -17 631 150 45 1 chr12 131663540 131663674 -12122781 + L1MC2 LINE L1 5964 6105 -239 418 228 0 49 chr12 131663874 131664058 -12122397 + (TTGGGG)n Simple_repeat Simple_repeat 6 180 0 258 99 55 61 chr12 131664157 131664338 -12122117 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 418 170 6 75 chr12 131664341 131664699 -12121756 + G-rich Low_complexity Low_complexity 1 333 0 356 83 45 89 chr12 131664462 131664619 -12121836 + (GTGTG)n Simple_repeat Simple_repeat 1 150 0 * 347 250 57 0 chr12 131664990 131665078 -12121377 + MLT1J LTR MaLR 88 180 -331 1703 166 19 52 chr12 131665105 131665220 -12121235 - AluJo SINE Alu 0 312 195 2144 129 3 3 chr12 131665220 131665522 -12120933 - AluSx SINE Alu -9 303 2 1703 166 19 52 chr12 131665522 131665747 -12120708 - AluJo SINE Alu -117 195 1 225 196 0 22 chr12 131665747 131665793 -12120662 + MLT1K LTR MaLR 540 584 -4 197 323 0 15 chr12 131666218 131666283 -12120172 + MIR SINE MIR 20 83 -179 263 306 0 44 chr12 131666897 131667077 -12119378 + CT-rich Low_complexity Low_complexity 3 174 0 469 273 42 30 chr12 131668121 131668286 -12118169 + MIR SINE MIR 78 244 -18 2352 83 0 13 chr12 131668308 131668632 -12117823 - AluY SINE Alu 0 311 1 802 130 0 0 chr12 131668690 131668798 -12117657 + FLAM_C SINE Alu 19 126 -17 2464 78 3 0 chr12 131668818 131669114 -12117341 + AluSp SINE Alu 1 297 -16 2120 125 4 0 chr12 131669144 131669459 -12116996 + AluSx SINE Alu 1 316 0 1008 157 7 0 chr12 131669462 131669609 -12116846 + AluJb SINE Alu 142 289 -23 2271 111 0 16 chr12 131669613 131669896 -12116559 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr12 131669896 131669920 -12116535 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2271 111 0 16 chr12 131669920 131669952 -12116503 + AluSx SINE Alu 280 311 -1 637 159 146 0 chr12 131670148 131670299 -12116156 + MER20 DNA MER1_type 36 208 -11 217 217 150 0 chr12 131670559 131670619 -12115836 + MIR SINE MIR 77 145 -117 263 330 21 0 chr12 131670987 131671081 -12115374 + MLT1K LTR MaLR 198 293 -295 1183 129 0 12 chr12 131671082 131671252 -12115203 + AluSg/x SINE Alu 137 304 -8 630 263 80 33 chr12 131671253 131671527 -12114928 + MLT1K LTR MaLR 282 568 -20 2310 88 7 29 chr12 131671728 131672036 -12114419 - AluSg SINE Alu -9 301 1 2136 113 40 0 chr12 131672432 131672733 -12113722 + AluSq SINE Alu 1 313 0 373 203 0 0 chr12 131672738 131672802 -12113653 + U6 snRNA snRNA 2 65 -42 2352 105 0 0 chr12 131673004 131673299 -12113156 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr12 131673470 131673507 -12112948 + AT_rich Low_complexity Low_complexity 1 37 0 1027 127 80 0 chr12 131673509 131673659 -12112796 + AluSg/x SINE Alu 134 295 -15 2233 107 4 0 chr12 131673681 131673989 -12112466 + AluSp SINE Alu 4 312 0 1623 230 80 84 chr12 131673989 131674129 -12112326 - L1MC4 LINE L1 -19 8023 7884 1199 243 69 0 chr12 131674129 131674446 -12112009 + MER58B DNA MER1_type 1 339 -2 1623 230 80 84 chr12 131674446 131674567 -12111888 - L1MC4 LINE L1 -158 7884 7764 1978 143 53 58 chr12 131674567 131674788 -12111667 + Tigger2a DNA MER2_type 1 222 -2486 2351 101 3 19 chr12 131674788 131675104 -12111351 - AluSp SINE Alu -2 311 1 1978 143 53 58 chr12 131675104 131675229 -12111226 + Tigger2a DNA MER2_type 222 346 -2362 2139 82 92 0 chr12 131675229 131675510 -12110945 + AluSq SINE Alu 2 308 -5 1978 143 53 58 chr12 131675510 131675534 -12110921 + Tigger2a DNA MER2_type 346 369 -2339 2052 146 3 0 chr12 131675534 131675828 -12110627 + AluSx SINE Alu 1 295 -17 1978 143 53 58 chr12 131675828 131675888 -12110567 + Tigger2a DNA MER2_type 369 431 -3 1623 230 80 84 chr12 131675888 131676095 -12110360 - L1MC4 LINE L1 -278 7764 7558 2358 92 13 13 chr12 131676095 131676401 -12110054 - AluSq SINE Alu -7 306 1 1623 230 80 84 chr12 131676401 131676672 -12109783 - L1MC4 LINE L1 -484 7558 7282 1439 76 0 0 chr12 131677038 131677210 -12109245 - AluSc SINE Alu -20 289 118 2097 157 0 0 chr12 131677272 131677577 -12108878 - AluSx SINE Alu -6 306 2 2162 125 3 0 chr12 131677789 131678078 -12108377 - AluSx SINE Alu -18 294 5 1037 281 58 50 chr12 131678085 131678462 -12107993 + MLT1G LTR MaLR 1 380 -210 2129 127 17 0 chr12 131678462 131678753 -12107702 + AluSx SINE Alu 1 296 -16 655 82 0 0 chr12 131678754 131678839 -12107616 + AluS SINE Alu 2 86 -227 1749 72 90 72 chr12 131678839 131679140 -12107315 + AluY SINE Alu 1 306 0 2143 96 0 4 chr12 131679338 131679609 -12106846 + AluSg SINE Alu 23 292 -18 2280 96 3 3 chr12 131679609 131679902 -12106553 + AluSc SINE Alu 1 293 -16 1826 136 41 0 chr12 131680311 131680605 -12105850 - AluSg SINE Alu -4 306 1 810 194 0 0 chr12 131680773 131680902 -12105553 - FLAM_C SINE Alu -13 130 2 1796 133 19 4 chr12 131680932 131681196 -12105259 - AluSx SINE Alu -38 274 7 675 225 128 58 chr12 131681471 131681729 -12104726 + LTR33 LTR ERVL 131 406 -115 210 37 0 0 chr12 131681744 131681771 -12104684 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2242 102 0 3 chr12 131681773 131682057 -12104398 - AluSc SINE Alu -26 283 1 1039 92 0 0 chr12 131682057 131682187 -12104268 - AluSq/x SINE Alu -177 136 7 2035 111 46 26 chr12 131682834 131683140 -12103315 - AluSx SINE Alu 0 312 1 222 325 90 30 chr12 131683140 131683293 -12103162 - L2 LINE L2 -289 3024 2855 504 0 0 0 chr12 131683293 131683349 -12103106 + (TG)n Simple_repeat Simple_repeat 1 56 0 222 325 90 30 chr12 131683349 131683395 -12103060 - L2 LINE L2 -458 2855 2813 731 188 0 0 chr12 131683784 131683917 -12102538 - FLAM_C SINE Alu 0 143 11 655 272 100 24 chr12 131683939 131684270 -12102185 - L1MC4 LINE L1 -61 7981 7626 2076 143 27 0 chr12 131684270 131684571 -12101884 - AluSx SINE Alu -3 309 1 729 188 0 8 chr12 131684584 131684712 -12101743 - FLAM_C SINE Alu -3 130 4 241 239 44 62 chr12 131684811 131684924 -12101531 - L1MD3 LINE L1 -1 8041 7907 271 206 0 15 chr12 131684934 131685002 -12101453 - L1MC4 LINE L1 -76 7966 7900 2354 95 0 7 chr12 131685003 131685299 -12101156 - AluSx SINE Alu -18 294 1 2210 120 0 0 chr12 131685316 131685608 -12100847 - AluSc SINE Alu -17 292 1 613 224 0 30 chr12 131685624 131685758 -12100697 - FLAM_C SINE Alu -1 132 3 2164 93 14 14 chr12 131685811 131686100 -12100355 + AluSx SINE Alu 5 293 -19 1987 131 10 24 chr12 131686772 131687062 -12099393 + AluSq SINE Alu 13 298 -15 226 146 18 18 chr12 131687343 131687398 -12099057 + CT-rich Low_complexity Low_complexity 3 57 0 2440 105 0 0 chr12 131687706 131688011 -12098444 + AluSq SINE Alu 1 305 -8 242 182 23 0 chr12 131688025 131688069 -12098386 + Alu SINE Alu 3 47 -256 1019 108 0 0 chr12 131688170 131688299 -12098156 - AluSq/x SINE Alu -183 129 1 2433 87 0 0 chr12 131688314 131688612 -12097843 - AluY SINE Alu -13 298 1 322 61 0 0 chr12 131688618 131688667 -12097788 - Alu SINE Alu 0 301 253 299 172 0 52 chr12 131688660 131688718 -12097737 - AluS SINE Alu -234 69 15 * 632 266 89 32 chr12 131688748 131689086 -12097369 - L1MC4 LINE L1 -63 7979 7623 2130 144 0 10 chr12 131689093 131689405 -12097050 - AluSx SINE Alu -3 309 1 747 185 0 8 chr12 131689424 131689554 -12096901 - FLAM_C SINE Alu -1 132 4 510 123 0 12 chr12 131689608 131689689 -12096766 + AluS SINE Alu 5 84 -229 1401 128 0 5 chr12 131689689 131689877 -12096578 - AluSx SINE Alu -125 187 1 525 229 34 120 chr12 131689877 131690144 -12096311 - L1MC4 LINE L1 -393 7649 7406 435 216 184 53 chr12 131690173 131690363 -12096092 + MIR SINE MIR 48 262 0 207 283 0 0 chr12 131690398 131690451 -12096004 + L2 LINE L2 3249 3301 -12 538 180 7 65 chr12 131690460 131690599 -12095856 - MIR SINE MIR -87 175 45 244 241 0 19 chr12 131690709 131690763 -12095692 + L2 LINE L2 3259 3311 -2 493 248 14 35 chr12 131691392 131691533 -12094922 - MIR SINE MIR -2 260 123 984 130 0 0 chr12 131691590 131691721 -12094734 - FLAM_C SINE Alu -11 132 2 435 234 241 0 chr12 131691742 131691883 -12094572 - MER5A DNA MER1_type -6 183 9 274 304 22 11 chr12 131691896 131691988 -12094467 - MIR SINE MIR -110 152 60 2243 110 3 0 chr12 131692122 131692421 -12094034 - AluSx SINE Alu -12 300 1 537 271 53 50 chr12 131692549 131692665 -12093790 + MER113 DNA MER1_type? 6 120 -401 1909 143 0 14 chr12 131692665 131692976 -12093479 - AluJo SINE Alu 0 307 1 537 271 53 50 chr12 131692976 131693161 -12093294 + MER113 DNA MER1_type? 120 309 -212 2049 120 0 4 chr12 131693169 131693445 -12093010 + AluSx SINE Alu 1 275 -37 2290 78 3 20 chr12 131694007 131694303 -12092152 - AluY SINE Alu -20 291 1 372 245 39 10 chr12 131694381 131694483 -12091972 - L2 LINE L2 -20 3252 3148 284 211 28 14 chr12 131694501 131694572 -12091883 - MIR SINE MIR -92 116 45 720 230 0 7 chr12 131694906 131695058 -12091397 + MIR SINE MIR 7 157 -105 622 143 0 121 chr12 131695115 131695255 -12091200 + AluJb SINE Alu 3 125 -187 1691 168 41 0 chr12 131695537 131695829 -12090626 + AluSp SINE Alu 1 304 -9 2232 113 0 0 chr12 131695831 131696152 -12090303 + AluSx SINE Alu 1 321 0 265 340 21 0 chr12 131696318 131696412 -12090043 - MER91B DNA MER1_type -1 189 94 245 195 65 52 chr12 131696430 131696480 -12089975 - MER91B DNA MER1_type -60 130 77 1700 171 16 20 chr12 131696480 131696606 -12089849 + AluJo SINE Alu 1 126 -186 2244 120 3 0 chr12 131696606 131696907 -12089548 + AluSq SINE Alu 1 302 -11 1700 171 16 20 chr12 131696907 131697084 -12089371 + AluJo SINE Alu 126 303 -9 245 195 65 52 chr12 131697084 131697110 -12089345 - MER91B DNA MER1_type -113 77 53 376 313 8 8 chr12 131697794 131697928 -12088527 + MIR SINE MIR 20 153 -55 2209 125 0 0 chr12 131697928 131698223 -12088232 + AluSq SINE Alu 1 295 -18 1504 187 18 21 chr12 131698246 131698529 -12087926 + AluJo SINE Alu 1 282 -30 181 286 127 8 chr12 131698615 131698741 -12087714 - L2 LINE L2 -122 3191 3051 507 163 0 0 chr12 131698742 131698822 -12087633 + AluJo/FLAM SINE Alu 35 114 -198 2359 72 0 26 chr12 131698823 131698994 -12087461 - AluY SINE Alu -10 301 140 2233 121 0 0 chr12 131698994 131699292 -12087163 - AluSc SINE Alu -11 298 1 2359 72 0 26 chr12 131699292 131699427 -12087028 - AluY SINE Alu -171 140 3 1027 116 39 33 chr12 131699430 131699453 -12087002 + MER50 LTR ERV1 552 573 -161 2237 116 3 0 chr12 131699453 131699747 -12086708 - AluSq SINE Alu -18 295 1 1027 116 39 33 chr12 131699747 131699904 -12086551 + MER50 LTR ERV1 573 733 -1 410 70 0 0 chr12 131699931 131699988 -12086467 + Alu SINE Alu 2 58 -260 820 194 0 0 chr12 131701050 131701179 -12085276 - AluJb SINE Alu -54 258 130 2234 123 0 16 chr12 131701192 131701329 -12085126 + AluSx SINE Alu 1 139 -173 2619 68 0 0 chr12 131701329 131701637 -12084818 + AluY SINE Alu 1 308 -3 2234 123 0 16 chr12 131701637 131701816 -12084639 + AluSx SINE Alu 139 312 0 1215 134 0 0 chr12 131701816 131701987 -12084468 + AluSg/x SINE Alu 133 303 -9 364 322 35 6 chr12 131702172 131702343 -12084112 - MIR SINE MIR -70 192 17 1560 132 0 0 chr12 131702725 131702930 -12083525 - AluJo SINE Alu -107 205 1 573 152 105 0 chr12 131702930 131703035 -12083420 - MLT1D LTR MaLR -381 124 9 992 210 22 28 chr12 131703159 131703551 -12082904 + LTR16C LTR ERVL 66 491 0 252 259 49 0 chr12 131703809 131703890 -12082565 - MIR SINE MIR -73 135 51 251 376 35 0 chr12 131704105 131704246 -12082209 - MIR SINE MIR -37 225 80 1208 236 135 24 chr12 131704336 131704752 -12081703 + MLT1C LTR MaLR 6 467 0 341 292 89 24 chr12 131705239 131705407 -12081048 - MIR SINE MIR -21 241 63 1606 179 40 89 chr12 131705433 131705551 -12080904 - L1MB7 LINE L1 0 6184 6062 1665 122 0 0 chr12 131705551 131705773 -12080682 - AluSg/x SINE Alu -6 304 83 1606 179 40 89 chr12 131705773 131706031 -12080424 - L1MB7 LINE L1 -122 6062 5829 1462 186 20 44 chr12 131706031 131706327 -12080128 - AluJo SINE Alu -23 289 1 1606 179 40 89 chr12 131706327 131706378 -12080077 - L1MB7 LINE L1 -355 5829 5777 2063 119 18 11 chr12 131706387 131706673 -12079782 - AluSx SINE Alu -22 290 3 214 27 0 54 chr12 131707466 131707503 -12078952 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 1151 116 74 199 chr12 131707913 131708049 -12078406 - AluJb SINE Alu -8 294 223 2233 89 7 7 chr12 131708049 131708340 -12078115 - AluSp SINE Alu -22 291 1 1151 116 74 199 chr12 131708340 131708539 -12077916 - AluJb SINE Alu -79 223 1 2185 107 4 0 chr12 131708837 131709118 -12077337 + AluSx SINE Alu 1 282 -30 2633 59 0 0 chr12 131709118 131709423 -12077032 + AluY SINE Alu 1 305 -6 2231 123 13 0 chr12 131709423 131709723 -12076732 + AluSx SINE Alu 1 304 -8 1507 175 49 20 chr12 131709733 131710081 -12076374 + L1M4 LINE L1 5019 5376 -770 1757 167 23 17 chr12 131710081 131710218 -12076237 + AluJo SINE Alu 1 136 -176 2505 78 0 3 chr12 131710218 131710527 -12075928 + AluY SINE Alu 1 308 -3 1757 167 23 17 chr12 131710527 131710689 -12075766 + AluJo SINE Alu 136 302 -10 359 164 0 0 chr12 131710690 131710763 -12075692 + L1MB8 LINE L1 6106 6178 0 350 194 139 23 chr12 131710776 131710905 -12075550 + MER113 DNA MER1_type? 311 454 -67 1368 248 97 7 chr12 131711247 131711670 -12074785 - MLT1C LTR MaLR -1 466 6 491 304 47 28 chr12 131711680 131711894 -12074561 - MIR SINE MIR -30 232 15 189 0 0 0 chr12 131712832 131712853 -12073602 + (TC)n Simple_repeat Simple_repeat 2 22 0 1545 174 23 4 chr12 131712853 131713108 -12073347 - AluJb SINE Alu -18 294 32 1995 171 59 27 chr12 131713235 131713681 -12072774 - MLT1D LTR MaLR 0 467 12 685 118 0 0 chr12 131713800 131713902 -12072553 - AluSg/x SINE Alu -7 303 202 2197 129 0 13 chr12 131713987 131714290 -12072165 + AluSx SINE Alu 1 299 -13 2597 74 3 0 chr12 131714354 131714666 -12071789 + AluSp SINE Alu 1 313 0 314 280 0 76 chr12 131714703 131714821 -12071634 + L1MC4 LINE L1 6595 6703 -1339 369 115 0 0 chr12 131714915 131714967 -12071488 + Alu SINE Alu 2 53 -249 1595 78 0 50 chr12 131714997 131715072 -12071383 - AluSq SINE Alu -105 208 131 1993 115 56 14 chr12 131715072 131715358 -12071097 - AluSx SINE Alu -14 298 1 1595 78 0 50 chr12 131715358 131715501 -12070954 - AluSq SINE Alu -182 131 1 192 264 111 0 chr12 131715639 131715711 -12070744 - L2 LINE L2 -1 3312 3233 481 309 23 11 chr12 131715979 131716154 -12070301 + Charlie8 DNA MER1_type 65 241 -2176 2277 80 3 23 chr12 131716216 131716382 -12070073 - AluSc SINE Alu -13 296 128 221 0 0 33 chr12 131716382 131716412 -12070043 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2238 82 4 0 chr12 131716412 131716693 -12069762 - AluY SINE Alu -29 282 1 2277 80 3 23 chr12 131716693 131716827 -12069628 - AluSc SINE Alu -179 130 1 347 348 59 37 chr12 131716978 131717248 -12069207 + L2 LINE L2 2994 3269 -3 261 270 16 0 chr12 131717633 131717696 -12068759 - L2 LINE L2 -2 3270 3207 876 167 16 102 chr12 131717887 131718073 -12068382 + AluJb SINE Alu 121 290 -22 1060 97 0 0 chr12 131718082 131718216 -12068239 + AluSq/x SINE Alu 1 134 -179 457 66 0 0 chr12 131718216 131718277 -12068178 + Alu SINE Alu 237 297 -15 1864 158 29 109 chr12 131718277 131718376 -12068079 - L1MB7 LINE L1 -47 6137 6032 2401 86 3 7 chr12 131718376 131718680 -12067775 + AluSx SINE Alu 1 303 -9 726 164 0 0 chr12 131718680 131718796 -12067659 - AluJo/FLAM SINE Alu -186 116 1 1864 158 29 109 chr12 131718796 131719030 -12067425 - L1MB7 LINE L1 -151 6033 5782 1727 176 3 24 chr12 131719030 131719326 -12067129 - AluJo SINE Alu -22 290 1 1864 158 29 109 chr12 131719326 131719338 -12067117 - L1MB7 LINE L1 -402 5782 5771 2646 54 0 19 chr12 131719338 131719654 -12066801 - AluY SINE Alu -1 310 1 1864 158 29 109 chr12 131719654 131719829 -12066626 - L1MB7 LINE L1 -413 5771 5656 197 320 107 0 chr12 131720106 131720181 -12066274 + L2 LINE L2 3231 3313 0 1938 176 22 6 chr12 131720799 131721158 -12065297 - MLT1A1 LTR MaLR 0 365 1 245 277 118 5 chr12 131721249 131721388 -12065067 + L2 LINE L2 2928 3090 -223 445 161 0 0 chr12 131721419 131721500 -12064955 - AluJo SINE Alu -4 308 228 350 107 0 0 chr12 131721506 131721562 -12064893 - AluJo SINE Alu -162 140 85 2317 99 0 0 chr12 131721965 131722257 -12064198 + AluY SINE Alu 1 292 -19 1990 93 83 50 chr12 131722269 131722312 -12064143 - AluSg SINE Alu 0 310 270 342 0 0 0 chr12 131722312 131722350 -12064105 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1990 93 83 50 chr12 131722350 131722606 -12063849 - AluSg SINE Alu -40 270 1 547 144 178 0 chr12 131722618 131722736 -12063719 - L1MB8 LINE L1 0 6178 6040 587 223 75 83 chr12 131722817 131722883 -12063572 - L1ME1 LINE L1 0 6166 6101 2400 89 3 19 chr12 131722883 131723199 -12063256 - AluY SINE Alu 0 311 1 2317 95 3 13 chr12 131723202 131723506 -12062949 - AluSq SINE Alu -12 301 1 587 223 75 83 chr12 131723506 131723737 -12062718 - L1ME1 LINE L1 -67 6099 5829 2142 100 38 3 chr12 131724068 131724197 -12062258 + AluSx SINE Alu 7 130 -182 2064 108 0 46 chr12 131724197 131724503 -12061952 + AluSc SINE Alu 1 292 -17 2142 100 38 3 chr12 131724503 131724663 -12061792 + AluSx SINE Alu 130 306 -6 2550 84 0 0 chr12 131724734 131725043 -12061412 - AluSq SINE Alu -4 309 1 686 112 0 0 chr12 131725047 131725154 -12061301 - AluSg/x SINE Alu 0 309 203 673 140 6 107 chr12 131725245 131725423 -12061032 + L1MB7 LINE L1 6008 6167 -17 1659 175 24 14 chr12 131725431 131725722 -12060733 + AluJo SINE Alu 1 294 -18 273 169 51 0 chr12 131725777 131725836 -12060619 + U7 snRNA snRNA 2 63 0 2416 77 3 7 chr12 131725853 131726152 -12060303 - AluSp SINE Alu -15 298 1 346 290 210 34 chr12 131726211 131726774 -12059681 - L2 LINE L2 -37 3276 2625 1976 143 0 33 chr12 131726987 131727294 -12059161 - AluJo SINE Alu -15 297 1 570 306 98 28 chr12 131727395 131727754 -12058701 - L1MC4a LINE L1 -1982 5826 5443 2402 88 0 0 chr12 131727756 131728052 -12058403 - AluSc SINE Alu -9 300 5 1037 110 0 0 chr12 131728056 131728192 -12058263 - AluSp SINE Alu -177 136 1 512 191 135 0 chr12 131728192 131728318 -12058137 - L1MC4 LINE L1 -132 7910 7768 969 114 8 0 chr12 131728372 131728504 -12057951 + AluSq/x SINE Alu 1 133 -180 180 0 0 0 chr12 131728870 131728890 -12057565 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2008 118 7 4 chr12 131728898 131729170 -12057285 - AluSx SINE Alu -39 273 1 1953 173 0 3 chr12 131729205 131729568 -12056887 + AluJo SINE Alu 1 362 0 369 176 162 0 chr12 131729594 131729668 -12056787 + FLAM_A SINE Alu 38 123 -10 2124 108 0 65 chr12 131729668 131729993 -12056462 + AluY SINE Alu 1 304 -7 191 364 0 0 chr12 131730374 131730440 -12056015 - MIR SINE MIR -11 251 186 240 183 49 24 chr12 131730820 131730902 -12055553 + GA-rich Low_complexity Low_complexity 5 88 0 2429 73 10 0 chr12 131731103 131731405 -12055050 + AluY SINE Alu 1 305 -6 2235 128 13 0 chr12 131731405 131731709 -12054746 + AluSx SINE Alu 1 308 -4 1514 178 46 20 chr12 131731715 131732064 -12054391 + L1M4 LINE L1 5019 5376 -770 1757 167 23 17 chr12 131732064 131732201 -12054254 + AluJo SINE Alu 1 136 -176 2505 78 0 3 chr12 131732201 131732510 -12053945 + AluY SINE Alu 1 308 -3 1757 167 23 17 chr12 131732510 131732672 -12053783 + AluJo SINE Alu 136 302 -10 359 164 0 0 chr12 131732673 131732746 -12053709 + L1MB8 LINE L1 6106 6178 0 350 194 139 23 chr12 131732759 131732888 -12053567 + MER113 DNA MER1_type? 311 454 -67 1414 241 97 7 chr12 131733230 131733653 -12052802 - MLT1C LTR MaLR -1 466 6 491 304 47 28 chr12 131733663 131733877 -12052578 - MIR SINE MIR -30 232 15 189 0 0 0 chr12 131734815 131734836 -12051619 + (TC)n Simple_repeat Simple_repeat 2 22 0 1545 174 23 4 chr12 131734836 131735091 -12051364 - AluJb SINE Alu -18 294 32 1980 171 61 27 chr12 131735218 131735663 -12050792 - MLT1D LTR MaLR 0 467 12 685 118 0 0 chr12 131735782 131735884 -12050571 - AluSg/x SINE Alu -7 305 204 2197 129 0 13 chr12 131735969 131736272 -12050183 + AluSx SINE Alu 1 299 -13 2597 74 3 0 chr12 131736336 131736648 -12049807 + AluSp SINE Alu 1 313 0 236 269 11 0 chr12 131736710 131736803 -12049652 + (TA)n Simple_repeat Simple_repeat 2 95 0 369 115 0 0 chr12 131736895 131736947 -12049508 + Alu SINE Alu 2 53 -249 1313 88 73 54 chr12 131736977 131737052 -12049403 - AluSq SINE Alu -105 208 136 1971 119 56 14 chr12 131737052 131737338 -12049117 - AluSx SINE Alu -14 298 1 1313 88 73 54 chr12 131737338 131737466 -12048989 - AluSq SINE Alu -177 136 1 910 126 0 0 chr12 131737482 131737609 -12048846 - FLAM_C SINE Alu -16 127 1 192 264 111 0 chr12 131737747 131737819 -12048636 - L2 LINE L2 -1 3312 3233 481 309 23 11 chr12 131738087 131738262 -12048193 + Charlie8 DNA MER1_type 65 241 -2176 2277 80 3 23 chr12 131738324 131738490 -12047965 - AluSc SINE Alu -13 296 128 221 0 0 33 chr12 131738490 131738520 -12047935 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2320 68 4 0 chr12 131738520 131738801 -12047654 - AluY SINE Alu -29 282 1 2277 80 3 23 chr12 131738801 131738935 -12047520 - AluSc SINE Alu -179 130 1 352 348 59 37 chr12 131739086 131739356 -12047099 + L2 LINE L2 2994 3269 -3 261 270 16 0 chr12 131739741 131739804 -12046651 - L2 LINE L2 -2 3270 3207 861 172 16 102 chr12 131739995 131740181 -12046274 + AluJb SINE Alu 121 290 -22 1060 97 0 0 chr12 131740190 131740324 -12046131 + AluSq/x SINE Alu 1 134 -179 187 212 61 61 chr12 131740358 131740424 -12046031 - L2 LINE L2 -1367 1947 1882 337 265 46 97 chr12 131740487 131740725 -12045730 + L2 LINE L2 2912 3137 -176 2500 72 0 0 chr12 131741653 131741944 -12044511 - AluY SINE Alu -20 291 1 2540 71 0 23 chr12 131741944 131742253 -12044202 - AluY SINE Alu -9 302 1 2292 121 0 13 chr12 131742561 131742876 -12043579 + AluSx SINE Alu 1 311 -1 485 211 121 78 chr12 131742906 131743017 -12043438 + MIR SINE MIR 69 191 -71 2509 69 0 3 chr12 131743017 131743321 -12043134 + AluY SINE Alu 1 303 -8 485 211 121 78 chr12 131743321 131743375 -12043080 + MIR SINE MIR 191 241 -21 534 191 191 0 chr12 131743392 131743507 -12042948 + Tigger3(Golem) DNA MER2_type 5 141 -2888 1056 135 19 0 chr12 131743549 131743705 -12042750 - AluJb SINE Alu -19 293 135 1599 156 48 17 chr12 131743705 131744000 -12042455 - AluJo SINE Alu -8 304 1 2478 90 3 0 chr12 131744004 131744316 -12042139 - AluSq SINE Alu 0 313 1 2668 137 12 46 chr12 131744319 131744744 -12041711 + Tigger3(Golem) DNA MER2_type 2563 2972 -56 1771 164 10 26 chr12 131744744 131745049 -12041406 + AluJo SINE Alu 1 300 -12 2668 137 12 46 chr12 131745049 131745104 -12041351 + Tigger3(Golem) DNA MER2_type 2972 3027 -1 237 264 226 0 chr12 131745591 131745697 -12040758 - MIR3 SINE MIR -41 167 38 545 288 20 13 chr12 131745709 131745862 -12040593 - MER63 DNA MER1_type -282 780 1 2016 169 44 35 chr12 131746224 131746675 -12039780 - L1MB7 LINE L1 0 6184 5730 2410 104 0 0 chr12 131746676 131746985 -12039470 - AluSx SINE Alu -3 309 1 270 0 0 0 chr12 131746988 131747018 -12039437 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 475 159 32 119 chr12 131747023 131747149 -12039306 - AluJb SINE Alu -195 117 3 1509 171 39 26 chr12 131747158 131747463 -12038992 - L1MB7 LINE L1 -447 5731 5423 387 280 127 16 chr12 131747554 131747743 -12038712 + LTR67 LTR ERVL 347 556 -1 2189 112 7 0 chr12 131747773 131748059 -12038396 - AluSx SINE Alu -24 288 1 182 182 0 0 chr12 131748076 131748109 -12038346 - L2 LINE L2 -846 2468 2436 1730 141 52 4 chr12 131748113 131748436 -12038019 - AluJb SINE Alu 0 337 2 1185 145 75 57 chr12 131748442 131748690 -12037765 - L1M3 LINE L1 -568 5603 5348 2067 131 3 13 chr12 131748690 131749003 -12037452 + AluJb SINE Alu 1 310 -2 1185 145 75 57 chr12 131749003 131749036 -12037419 - L1M3 LINE L1 -823 5348 5317 2474 58 7 0 chr12 131749182 131749474 -12036981 + AluY SINE Alu 1 294 -17 227 172 17 86 chr12 131749975 131750033 -12036422 - L2 LINE L2 -5 3267 3214 399 322 9 84 chr12 131750357 131750615 -12035840 + MIR SINE MIR 6 239 -23 1562 184 48 17 chr12 131751245 131751538 -12034917 - AluJo SINE Alu -10 302 1 355 315 0 18 chr12 131752121 131752232 -12034223 + MIR SINE MIR 37 145 -63 189 339 0 0 chr12 131752269 131752328 -12034127 - L2 LINE L2 -6 3266 3208 237 333 38 45 chr12 131752545 131752677 -12033778 - MLT1K LTR MaLR -181 407 277 462 292 48 24 chr12 131753229 131753438 -12033017 - MIR SINE MIR -2 260 47 1827 147 41 49 chr12 131753515 131753882 -12032573 + THE1B LTR MaLR 1 364 0 11579 77 10 9 chr12 131753882 131754250 -12032205 + THE1B-int LTR MaLR 1 367 -1213 2390 91 0 3 chr12 131754250 131754548 -12031907 - AluY SINE Alu -14 297 1 11579 77 10 9 chr12 131754548 131755754 -12030701 + THE1B-int LTR MaLR 367 1577 -3 7502 82 15 0 chr12 131754754 131755757 -12030698 + THE1B-int LTR MaLR 563 1580 0 2055 143 36 31 chr12 131755757 131756114 -12030341 + THE1B LTR MaLR 1 359 -5 584 268 56 6 chr12 131756126 131756305 -12030150 - MIR SINE MIR -62 200 13 2241 125 0 0 chr12 131757764 131758069 -12028386 - AluSx SINE Alu -7 305 1 184 305 84 32 chr12 131758071 131758166 -12028289 + MIR SINE MIR 162 261 -1 1620 169 16 23 chr12 131758384 131758691 -12027764 + AluJb SINE Alu 1 305 -7 1754 201 24 0 chr12 131758766 131759105 -12027350 - MER7A DNA MER2_type -1 345 1 2333 86 3 3 chr12 131759142 131759432 -12027023 + AluSx SINE Alu 6 295 -17 2521 73 0 13 chr12 131759434 131759749 -12026706 + AluY SINE Alu 1 311 0 364 250 32 73 chr12 131759780 131759871 -12026584 - L1ME4a LINE L1 -199 5922 5836 2696 36 0 7 chr12 131759871 131760176 -12026279 + AluY SINE Alu 1 303 -8 364 250 32 73 chr12 131760176 131760208 -12026247 - L1ME4a LINE L1 -285 5836 5804 528 298 117 43 chr12 131760229 131760735 -12025720 - L1ME4a LINE L1 -42 6079 5537 2530 90 0 3 chr12 131761318 131761629 -12024826 - AluSx SINE Alu -2 310 1 278 314 0 0 chr12 131762019 131762089 -12024366 + MIR SINE MIR 92 161 -101 250 114 0 0 chr12 131762170 131762214 -12024241 - AluJb SINE Alu 0 302 259 1153 163 5 0 chr12 131762217 131762407 -12024048 - AluJb SINE Alu -117 195 5 331 216 30 146 chr12 131762879 131762949 -12023506 - L1MC5 LINE L1 -33 7928 7852 1529 175 4 16 chr12 131762949 131763201 -12023254 + AluJb SINE Alu 1 249 -63 331 216 30 146 chr12 131763201 131763329 -12023126 - L1MC5 LINE L1 -109 7852 7753 741 260 78 9 chr12 131763549 131763768 -12022687 + MIR SINE MIR 29 262 0 1072 136 0 13 chr12 131763973 131764127 -12022328 - AluJb SINE Alu -17 295 144 2336 95 7 0 chr12 131764145 131764441 -12022014 - AluSp SINE Alu -15 298 1 1349 171 35 56 chr12 131764601 131764719 -12021736 + AluJo SINE Alu 19 138 -174 1667 159 38 31 chr12 131764719 131765008 -12021447 + AluJo SINE Alu 1 291 -21 1349 171 35 56 chr12 131765008 131765176 -12021279 + AluJo SINE Alu 138 299 -13 1991 94 21 35 chr12 131766056 131766370 -12020085 - AluY SINE Alu 0 310 1 246 224 69 0 chr12 131766693 131766751 -12019704 + L2 LINE L2 3211 3272 0 229 259 0 0 chr12 131766957 131767015 -12019440 + L1ME LINE L1 5595 5652 -469 2373 89 0 7 chr12 131767015 131767318 -12019137 + AluSx SINE Alu 1 301 -11 33 0 0 0 chr12 131767375 131767408 -12019047 + AT_rich Low_complexity Low_complexity 1 33 0 603 167 0 0 chr12 131767408 131767504 -12018951 - FLAM_A SINE Alu -27 115 20 1554 179 16 56 chr12 131767636 131767759 -12018696 + AluJo SINE Alu 1 127 -185 2028 132 10 3 chr12 131767759 131768055 -12018400 - AluSx SINE Alu -14 298 1 2081 82 16 26 chr12 131768060 131768363 -12018092 - AluY SINE Alu -11 300 1 1554 179 16 56 chr12 131768363 131768552 -12017903 + AluJo SINE Alu 131 306 -6 2407 93 0 0 chr12 131769199 131769500 -12016955 + AluSq SINE Alu 3 303 -10 246 327 39 0 chr12 131769532 131769636 -12016819 - MIR SINE MIR -134 128 21 226 250 42 42 chr12 131769697 131769793 -12016662 + HAL1b LINE L1 1238 1333 -15 61 15 0 0 chr12 131769848 131769916 -12016539 + AT_rich Low_complexity Low_complexity 1 68 0 2287 173 42 24 chr12 131769980 131770477 -12015978 - L1MB7 LINE L1 0 6184 5679 2240 115 30 0 chr12 131770495 131770799 -12015656 - AluSq SINE Alu 0 313 1 452 234 94 0 chr12 131771793 131771921 -12014534 - MER115 DNA AcHobo -22 671 532 597 253 77 10 chr12 131772059 131772253 -12014202 - MER115 DNA AcHobo -364 329 123 199 272 250 0 chr12 131772513 131772605 -12013850 + MER5B DNA MER1_type 60 174 -4 210 71 0 0 chr12 131772922 131772950 -12013505 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 334 273 182 15 chr12 131772952 131773084 -12013371 - L2 LINE L2 0 3272 3119 563 231 69 31 chr12 131773195 131773355 -12013100 + MER5A DNA MER1_type 1 166 -23 443 188 97 104 chr12 131773388 131773475 -12012980 + MER5B DNA MER1_type 4 91 -87 2049 123 7 7 chr12 131773475 131773767 -12012688 + AluSx SINE Alu 1 292 -20 443 188 97 104 chr12 131773767 131773823 -12012632 + MER5B DNA MER1_type 91 146 -32 27 0 0 26 chr12 131774305 131774328 -12012127 + AT_rich Low_complexity Low_complexity 1 24 -13 1810 132 36 36 chr12 131774328 131774632 -12011823 - AluJb SINE Alu -8 304 1 27 0 0 26 chr12 131774632 131774646 -12011809 + AT_rich Low_complexity Low_complexity 24 37 0 516 16 0 0 chr12 131774707 131774768 -12011687 + (TCTCCC)n Simple_repeat Simple_repeat 1 61 0 7846 21 6 329 chr12 131774768 131776732 -12009723 + SVA Other Other 57 1386 0 770 309 27 8 chr12 131776742 131776998 -12009457 - MIR SINE MIR 0 262 2 1664 143 73 0 chr12 131777267 131777539 -12008916 - AluJo SINE Alu -20 292 1 413 266 92 0 chr12 131777594 131777767 -12008688 + L1ME4a LINE L1 5863 6051 -70 28 0 0 0 chr12 131778409 131778437 -12008018 + AT_rich Low_complexity Low_complexity 1 28 0 932 200 0 6 chr12 131778985 131779145 -12007310 - AluJb SINE Alu -153 159 1 189 0 0 0 chr12 131779155 131779176 -12007279 + (A)n Simple_repeat Simple_repeat 1 21 0 304 198 135 0 chr12 131779181 131779276 -12007179 + Alu SINE Alu 244 296 -6 3053 191 34 64 chr12 131779277 131779506 -12006949 - L1M4 LINE L1 -1605 4541 4307 2099 141 3 0 chr12 131779506 131779805 -12006650 - AluSq SINE Alu -13 300 1 1897 150 7 10 chr12 131779813 131780106 -12006349 - AluJo SINE Alu -20 292 1 3053 191 34 64 chr12 131780106 131780187 -12006268 - L1M4 LINE L1 -1846 4300 4218 180 0 0 0 chr12 131780187 131780207 -12006248 + (TA)n Simple_repeat Simple_repeat 2 21 0 3053 191 34 64 chr12 131780207 131780335 -12006120 - L1M4 LINE L1 -1928 4218 4088 2027 142 0 3 chr12 131780335 131780637 -12005818 + AluJb SINE Alu 11 311 -1 3053 191 34 64 chr12 131780637 131781050 -12005405 - L1M4 LINE L1 -2058 4088 3705 612 124 0 80 chr12 131781091 131781204 -12005251 - AluSx SINE Alu -18 294 191 1077 109 0 0 chr12 131781211 131781349 -12005106 - AluSx SINE Alu -169 143 6 207 278 0 69 chr12 131781909 131781981 -12004474 + MIR SINE MIR 119 185 -77 2450 91 13 0 chr12 131781988 131782296 -12004159 + AluSx SINE Alu 1 312 0 772 150 0 8 chr12 131782627 131782754 -12003701 + FLAM_C SINE Alu 1 126 -7 2487 87 3 0 chr12 131782764 131783073 -12003382 - AluSx SINE Alu -2 310 1 1491 174 0 93 chr12 131783658 131783790 -12002665 + AluJo SINE Alu 1 144 -158 2233 118 0 0 chr12 131783790 131784077 -12002378 + AluSq SINE Alu 1 287 -26 1491 174 0 93 chr12 131784077 131784277 -12002178 + AluJo SINE Alu 144 302 0 2011 122 25 4 chr12 131785014 131785293 -12001162 + AluJo SINE Alu 1 285 -27 1129 125 0 40 chr12 131787359 131787535 -11998920 - AluSg/x SINE Alu -10 300 132 2149 85 3 108 chr12 131787535 131787876 -11998579 - AluSx SINE Alu -7 305 1 215 259 223 36 chr12 131788407 131788573 -11997882 + MIR SINE MIR 66 262 0 2320 89 34 0 chr12 131788756 131789048 -11997407 - AluSx SINE Alu -10 302 1 1446 237 9 3 chr12 131789127 131789456 -11996999 - MER58B DNA MER1_type -8 333 3 1697 149 56 42 chr12 131789518 131789751 -11996704 + L1MD3 LINE L1 7626 7867 -128 1987 146 0 10 chr12 131789751 131790045 -11996410 + AluJb SINE Alu 1 291 -21 1697 149 56 42 chr12 131790045 131790167 -11996288 + L1MD3 LINE L1 7867 7986 -9 2417 76 27 0 chr12 131790170 131790471 -11995984 - AluY SINE Alu -2 309 1 2475 57 0 32 chr12 131791187 131791501 -11994954 + AluY SINE Alu 1 304 -7 2079 126 0 0 chr12 131791938 131792216 -11994239 + AluSx SINE Alu 23 300 -12 193 310 44 35 chr12 131792232 131792345 -11994110 - L2 LINE L2 -1 3271 3158 809 166 0 22 chr12 131792685 131792824 -11993631 + FLAM_C SINE Alu 1 136 -7 1716 171 7 20 chr12 131793104 131793240 -11993215 + AluJb SINE Alu 1 137 -175 2260 124 7 0 chr12 131793240 131793546 -11992909 + AluSx SINE Alu 1 308 -4 1716 171 7 20 chr12 131793546 131793701 -11992754 + AluJb SINE Alu 137 288 -24 387 280 127 16 chr12 131793731 131793920 -11992535 - LTR67 LTR ERVL -1 556 347 1509 171 39 26 chr12 131794011 131794316 -11992139 + L1MB7 LINE L1 5423 5731 -447 475 159 32 119 chr12 131794325 131794451 -11992004 + AluJb SINE Alu 3 117 -195 270 0 0 0 chr12 131794456 131794486 -11991969 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2410 104 0 0 chr12 131794489 131794798 -11991657 + AluSx SINE Alu 1 309 -3 2094 174 46 7 chr12 131794799 131795237 -11991218 + L1MB7 LINE L1 5730 6184 0 545 288 20 13 chr12 131795599 131795752 -11990703 + MER63 DNA MER1_type 1 780 -282 233 260 231 0 chr12 131795764 131795868 -11990587 + MIR3 SINE MIR 38 165 -43 2668 137 12 46 chr12 131796357 131796412 -11990043 - Tigger3(Golem) DNA MER2_type -1 3027 2972 1757 167 10 26 chr12 131796412 131796717 -11989738 - AluJo SINE Alu -12 300 1 2668 137 12 46 chr12 131796717 131797142 -11989313 - Tigger3(Golem) DNA MER2_type -56 2972 2563 2478 90 3 0 chr12 131797145 131797457 -11988998 + AluSq SINE Alu 1 313 0 1571 159 48 17 chr12 131797461 131797756 -11988699 + AluJo SINE Alu 1 304 -8 1056 135 19 0 chr12 131797756 131797912 -11988543 + AluJb SINE Alu 135 293 -19 534 191 191 0 chr12 131797954 131798069 -11988386 - Tigger3(Golem) DNA MER2_type -2888 141 5 479 208 67 87 chr12 131798086 131798140 -11988315 - MIR SINE MIR -21 241 187 2607 63 0 0 chr12 131798140 131798443 -11988012 - AluY SINE Alu -8 303 1 479 208 67 87 chr12 131798443 131798537 -11987918 - MIR SINE MIR -75 187 96 2292 121 0 13 chr12 131798584 131798899 -11987556 - AluSx SINE Alu -1 311 1 2548 71 0 23 chr12 131799207 131799517 -11986938 + AluY SINE Alu 1 303 -8 2510 72 0 0 chr12 131799517 131799809 -11986646 + AluY SINE Alu 1 292 -19 747 219 0 38 chr12 131799887 131800047 -11986408 + MER63 DNA MER1_type 1 780 -282 413 310 158 26 chr12 131800136 131800478 -11985977 + L1MEd LINE L1 512 898 -5221 565 248 91 15 chr12 131800531 131800729 -11985726 - MER102a DNA MER1_type -2 328 116 415 255 7 7 chr12 131800729 131800874 -11985581 + CT-rich Low_complexity Low_complexity 2 146 0 1637 153 0 4 chr12 131800880 131801129 -11985326 - AluJb SINE Alu -64 248 1 1782 169 57 12 chr12 131801137 131801539 -11984916 - L1MB5 LINE L1 0 6174 5755 224 167 21 0 chr12 131801713 131801761 -11984694 + CT-rich Low_complexity Low_complexity 2 50 0 2127 107 33 0 chr12 131801763 131802063 -11984392 - AluSg SINE Alu 0 310 1 2329 80 0 13 chr12 131802063 131802363 -11984092 - AluSx SINE Alu -16 296 1 22 0 0 0 chr12 131803505 131803527 -11982928 + GC_rich Low_complexity Low_complexity 1 22 0 441 115 0 0 chr12 131803596 131803674 -11982781 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 57 0 0 chr12 131803872 131803907 -11982548 + GC_rich Low_complexity Low_complexity 1 35 0 48 118 0 0 chr12 131803929 131804201 -11982254 + GC_rich Low_complexity Low_complexity 1 272 0 23 54 0 0 chr12 131804242 131804279 -11982176 + GC_rich Low_complexity Low_complexity 1 37 0 227 239 11 33 chr12 131804313 131804405 -11982050 + C-rich Low_complexity Low_complexity 2 91 0 23 0 0 0 chr12 131804569 131804592 -11981863 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 131805749 131805775 -11980680 + GC_rich Low_complexity Low_complexity 1 26 0 801 110 26 84 chr12 131806334 131806525 -11979930 + MER53 DNA DNA 1 180 -9 1515 151 28 88 chr12 131806896 131807024 -11979431 + AluJo SINE Alu 1 135 -177 2297 70 6 10 chr12 131807024 131807336 -11979119 + AluY SINE Alu 1 311 0 2319 100 0 3 chr12 131807345 131807655 -11978800 + AluSx SINE Alu 3 311 -1 1515 151 28 88 chr12 131807655 131807667 -11978788 + AluJo SINE Alu 143 154 -158 2359 72 7 0 chr12 131807667 131807973 -11978482 + AluY SINE Alu 1 308 -3 1515 151 28 88 chr12 131807973 131808140 -11978315 + AluJo SINE Alu 154 300 -12 437 250 50 0 chr12 131808904 131808952 -11977503 - Charlie8 DNA MER1_type -184 157 113 207 0 0 0 chr12 131808952 131808975 -11977480 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 437 250 50 0 chr12 131808975 131809046 -11977409 - Charlie8 DNA MER1_type -228 113 32 1016 148 0 0 chr12 131809077 131809232 -11977223 + AluJb SINE Alu 142 296 -16 2332 100 3 0 chr12 131809234 131809545 -11976910 + AluSx SINE Alu 1 312 0 482 351 40 18 chr12 131810297 131810522 -11975933 + MIR SINE MIR 32 261 -1 279 342 107 13 chr12 131810769 131810918 -11975537 + MIR SINE MIR 75 237 -25 186 239 193 0 chr12 131811486 131811574 -11974881 - L2 LINE L2 -646 2668 2564 287 276 69 26 chr12 131812189 131812305 -11974150 - MIR SINE MIR -126 136 16 1957 117 3 7 chr12 131812694 131813005 -11973450 - AluSx SINE Alu 0 310 1 462 329 75 9 chr12 131813117 131813330 -11973125 - MIR SINE MIR -15 247 21 273 336 62 13 chr12 131814298 131814478 -11971977 + MIR SINE MIR 62 250 -12 210 268 110 12 chr12 131814565 131814647 -11971808 + MER5A DNA MER1_type 48 137 -52 828 192 81 39 chr12 131814770 131814818 -11971637 - L1MB7 LINE L1 -2 6182 6138 1753 135 20 33 chr12 131814818 131814973 -11971482 - AluJo SINE Alu -13 299 143 185 62 0 31 chr12 131814973 131815005 -11971450 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2254 88 0 0 chr12 131815006 131815290 -11971165 - AluSc SINE Alu -25 284 1 1753 135 20 33 chr12 131815290 131815435 -11971020 - AluJo SINE Alu -168 144 1 828 192 81 39 chr12 131815435 131815620 -11970835 - L1MB7 LINE L1 -46 6138 5939 200 281 0 18 chr12 131815765 131815822 -11970633 + (CA)n Simple_repeat Simple_repeat 1 56 0 486 0 0 0 chr12 131815869 131815923 -11970532 + (TA)n Simple_repeat Simple_repeat 2 55 0 405 291 22 8 chr12 131815954 131816088 -11970367 - L1MC4a LINE L1 -1944 5864 5729 198 0 0 0 chr12 131816104 131816126 -11970329 + (A)n Simple_repeat Simple_repeat 1 22 0 2129 105 3 29 chr12 131816132 131816445 -11970010 + AluSg SINE Alu 1 305 -5 1893 138 3 3 chr12 131817504 131817819 -11968636 - AluSx SINE Alu 0 315 1 1100 177 0 6 chr12 131817928 131818103 -11968352 + FAM SINE Alu 1 174 -1 331 234 40 32 chr12 131818210 131818334 -11968121 - L1ME3A LINE L1 -35 6135 6011 2028 103 10 10 chr12 131818391 131818683 -11967772 - AluSg SINE Alu -18 292 1 274 277 136 43 chr12 131818700 131818935 -11967520 + MER102b DNA MER1_type 85 341 0 2188 99 0 10 chr12 131819222 131819347 -11967108 + AluSg SINE Alu 9 134 -176 2267 76 10 10 chr12 131819347 131819650 -11966805 + AluSp SINE Alu 5 307 -6 2188 99 0 10 chr12 131819650 131819817 -11966638 + AluSg SINE Alu 134 298 -12 2271 119 0 0 chr12 131819828 131820140 -11966315 + AluSx SINE Alu 1 312 0 522 242 30 86 chr12 131820373 131820571 -11965884 + MIR SINE MIR 33 219 -43 1596 150 24 65 chr12 131820571 131820703 -11965752 + AluJo SINE Alu 1 137 -175 2119 113 0 3 chr12 131820703 131821003 -11965452 + AluY SINE Alu 11 309 -2 1596 150 24 65 chr12 131821003 131821164 -11965291 + AluJo SINE Alu 137 282 -30 291 0 102 0 chr12 131821168 131821227 -11965228 + (TA)n Simple_repeat Simple_repeat 1 65 0 1975 124 17 3 chr12 131821250 131821540 -11964915 + AluSx SINE Alu 1 294 -18 780 169 0 0 chr12 131821561 131821679 -11964776 - FLAM_C SINE Alu -25 118 1 485 265 165 0 chr12 131821710 131821880 -11964575 - MIR SINE MIR -2 260 63 1946 142 3 7 chr12 131821928 131822238 -11964217 + AluSx SINE Alu 1 309 -3 376 320 34 14 chr12 131822878 131823025 -11963430 + MIR SINE MIR 94 243 -19 1958 159 3 0 chr12 131823162 131823464 -11962991 + AluJo SINE Alu 1 303 -9 1896 115 24 30 chr12 131823465 131823760 -11962695 + AluSx SINE Alu 1 293 -19 2051 109 20 3 chr12 131824052 131824346 -11962109 + AluSx SINE Alu 1 299 -13 331 272 58 55 chr12 131824389 131824698 -11961757 - L1MC5 LINE L1 -178 7783 7474 180 0 0 0 chr12 131825079 131825099 -11961356 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 1703 96 142 4 chr12 131825169 131825429 -11961026 + AluSx SINE Alu 1 296 -6 1711 171 13 10 chr12 131825906 131826210 -11960245 + AluJo SINE Alu 1 305 -7 1775 166 0 10 chr12 131826220 131826509 -11959946 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr12 131826509 131826530 -11959925 + AT_rich Low_complexity Low_complexity 1 21 0 301 332 84 26 chr12 131826530 131826756 -11959699 - L2 LINE L2 -135 3178 2940 2262 94 0 0 chr12 131826780 131827067 -11959388 + AluSx SINE Alu 3 289 -23 204 273 0 0 chr12 131827229 131827284 -11959171 + (TG)n Simple_repeat Simple_repeat 2 56 0 311 320 120 10 chr12 131827285 131827485 -11958970 - L1MC4 LINE L1 -14 8028 7807 1633 148 98 0 chr12 131827486 131827763 -11958692 + AluJb SINE Alu 1 304 -8 184 318 68 11 chr12 131828150 131828238 -11958217 - L2 LINE L2 -44 3228 3136 339 290 94 0 chr12 131828330 131828468 -11957987 + Charlie8 DNA MER1_type 61 211 -2206 2234 85 0 26 chr12 131828584 131828890 -11957565 - AluY SINE Alu -13 298 1 1117 61 0 0 chr12 131828893 131829025 -11957430 - AluY SINE Alu -179 132 1 501 219 25 59 chr12 131829025 131829128 -11957327 - L1 LINE L1 -815 5331 5226 1853 165 3 25 chr12 131829128 131829444 -11957011 - AluJo SINE Alu -2 310 2 501 219 25 59 chr12 131829444 131829535 -11956920 - L1 LINE L1 -920 5226 5145 1970 115 44 0 chr12 131829535 131829831 -11956624 - AluJb SINE Alu -1 311 3 501 219 25 59 chr12 131829831 131829860 -11956595 - L1 LINE L1 -1001 5145 5117 25 0 0 0 chr12 131829877 131829902 -11956553 + AT_rich Low_complexity Low_complexity 1 25 0 2169 103 14 0 chr12 131829914 131830204 -11956251 + AluSx SINE Alu 1 294 -18 1892 157 0 7 chr12 131830217 131830511 -11955944 + AluSx SINE Alu 2 293 -19 2274 101 0 3 chr12 131830688 131830995 -11955460 + AluSx SINE Alu 1 306 -6 314 273 41 66 chr12 131831059 131831180 -11955275 - L1ME LINE L1 -340 5781 5664 390 237 61 30 chr12 131831346 131831477 -11954978 - L1ME LINE L1 -2285 5523 5389 24 0 0 0 chr12 131832245 131832269 -11954186 + AT_rich Low_complexity Low_complexity 1 24 0 1708 159 54 0 chr12 131832638 131832933 -11953522 - AluJo SINE Alu -1 311 1 261 263 67 20 chr12 131834639 131834756 -11951699 + MIR SINE MIR 15 137 -71 185 0 40 0 chr12 131834767 131834792 -11951663 + (TTA)n Simple_repeat Simple_repeat 2 27 0 809 266 52 16 chr12 131835106 131835358 -11951097 - MIR SINE MIR 0 262 2 2115 109 3 10 chr12 131835547 131835851 -11950604 + AluSq SINE Alu 1 302 -11 487 82 0 35 chr12 131835870 131835955 -11950500 - AluJ/FRAM SINE Alu -7 305 224 252 71 48 0 chr12 131836063 131836105 -11950350 - L1M4 LINE L1 -281 5903 5860 2027 125 0 22 chr12 131836123 131836442 -11950013 - AluSx SINE Alu 0 312 1 1995 99 26 20 chr12 131836444 131836748 -11949707 - AluSx SINE Alu -6 306 1 282 274 116 49 chr12 131837367 131837531 -11948924 + L1ME4a LINE L1 5944 6118 -3 2365 53 0 10 chr12 131837536 131837839 -11948616 - AluY SINE Alu -11 300 1 191 349 48 0 chr12 131838864 131838927 -11947528 + MIR SINE MIR 2 67 -195 2049 127 7 0 chr12 131839077 131839368 -11947087 - AluSx SINE Alu -18 294 2 2037 136 0 16 chr12 131839971 131840288 -11946167 + AluJo SINE Alu 1 312 0 349 304 75 35 chr12 131840659 131840886 -11945569 - L2 LINE L2 -344 2970 2735 1899 106 30 20 chr12 131841291 131841593 -11944862 + AluSx SINE Alu 2 306 -6 1600 133 0 0 chr12 131841595 131841820 -11944635 + AluSx SINE Alu 1 225 -87 325 310 20 45 chr12 131841858 131842058 -11944397 - L1M4 LINE L1 -2011 5797 5603 512 188 183 71 chr12 131842127 131842172 -11944283 - MER20 DNA MER1_type 0 219 180 2038 116 3 20 chr12 131842172 131842475 -11943980 - AluSx SINE Alu -14 298 1 512 188 183 71 chr12 131842475 131842626 -11943829 - MER20 DNA MER1_type -39 180 1 244 307 30 31 chr12 131842727 131842870 -11943585 + MIR SINE MIR 1 145 -63 980 99 0 0 chr12 131842874 131843005 -11943450 + AluJb SINE Alu 166 296 -16 189 0 0 0 chr12 131844100 131844121 -11942334 + (TCTCCC)n Simple_repeat Simple_repeat 1 21 0 5253 75 45 13 chr12 131844121 131844906 -11941549 + SVA Other Other 57 866 -520 926 155 27 0 chr12 131844917 131845065 -11941390 + FRAM SINE Alu 1 147 -29 21 82 0 0 chr12 131845071 131845120 -11941335 + AT_rich Low_complexity Low_complexity 1 49 0 970 68 0 15 chr12 131845707 131845839 -11940616 + AluSg/x SINE Alu 174 303 -9 616 197 8 8 chr12 131845841 131845958 -11940497 - AluJb SINE Alu -195 117 1 1005 180 61 0 chr12 131845964 131846192 -11940263 - L1MB7 LINE L1 -120 6064 5823 1635 179 3 24 chr12 131846192 131846488 -11939967 - AluJo SINE Alu -22 290 1 2463 60 0 19 chr12 131846497 131846814 -11939641 - AluY SINE Alu 0 311 1 465 301 99 11 chr12 131846819 131847081 -11939374 - LTR16A LTR ERVL -69 381 97 601 141 30 0 chr12 131847475 131847574 -11938881 - AluJ/FLAM SINE Alu -210 102 1 2341 70 3 3 chr12 131847647 131847946 -11938509 - AluSp SINE Alu -9 304 6 1529 177 124 0 chr12 131848218 131848484 -11937971 + AluJb SINE Alu 1 299 -3 1997 95 29 4 chr12 131848487 131848761 -11937694 + AluSq SINE Alu 1 281 -32 203 79 26 0 chr12 131848761 131848799 -11937656 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 321 118 0 0 chr12 131848939 131848990 -11937465 + (TTCTC)n Simple_repeat Simple_repeat 4 54 0 929 169 38 0 chr12 131848996 131849156 -11937299 - FRAM SINE Alu 0 166 1 2172 110 7 0 chr12 131849924 131850233 -11936222 + AluSx SINE Alu 2 312 0 1628 125 61 48 chr12 131850251 131850562 -11935893 + L1MB5 LINE L1 5860 6174 0 699 207 0 0 chr12 131850572 131850688 -11935767 + FLAM_C SINE Alu 3 118 -25 24 0 0 0 chr12 131850689 131850713 -11935742 + AT_rich Low_complexity Low_complexity 1 24 0 2324 103 0 3 chr12 131850729 131851041 -11935414 + AluSx SINE Alu 1 311 -1 659 82 41 10 chr12 132051131 132051229 -11735226 + AluSg/x SINE Alu 192 292 -17 846 239 63 13 chr12 132051230 132051469 -11734986 - L1MD3 LINE L1 -14 7981 7731 1504 185 7 47 chr12 132051482 132051802 -11734653 - AluJo SINE Alu 0 308 1 2159 133 0 7 chr12 132051844 132052146 -11734309 - AluSx SINE Alu -12 300 1 2333 113 3 0 chr12 132052627 132052938 -11733517 + AluSx SINE Alu 1 312 0 1230 110 0 0 chr12 132052938 132053102 -11733353 + AluSq SINE Alu 134 297 -16 2207 82 0 4 chr12 132053104 132053383 -11733072 + AluY SINE Alu 1 278 -33 235 0 28 28 chr12 132053388 132053424 -11733031 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 351 65 0 0 chr12 132053595 132053641 -11732814 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1141 172 0 60 chr12 132054297 132054529 -11731926 - AluJb SINE Alu -9 303 86 839 171 0 0 chr12 132054605 132054734 -11731721 + AluJo/FLAM SINE Alu 1 129 -173 2378 80 7 7 chr12 132054734 132055033 -11731422 - AluSp SINE Alu -14 299 1 1800 152 14 14 chr12 132056604 132056893 -11729562 + AluJo SINE Alu 9 297 -15 2231 112 10 0 chr12 132056913 132057217 -11729238 - AluSx SINE Alu -5 307 1 1094 103 0 0 chr12 132057248 132057384 -11729071 - AluSq/x SINE Alu -176 136 1 1108 202 27 30 chr12 132057384 132057598 -11728857 - LTR8 LTR ERV1 -430 261 47 2485 67 0 0 chr12 132057598 132057895 -11728560 - AluY SINE Alu -14 297 1 1108 202 27 30 chr12 132057895 132057942 -11728513 - LTR8 LTR ERV1 -644 47 1 1191 150 36 0 chr12 132057942 132058162 -11728293 + L1MC3 LINE L1 7545 7772 -13 186 43 0 0 chr12 132058179 132058202 -11728253 + (A)n Simple_repeat Simple_repeat 1 23 0 381 312 99 7 chr12 132058338 132058479 -11727976 - L2 LINE L2 -833 2481 2328 2270 122 0 0 chr12 132058498 132058793 -11727662 + AluSx SINE Alu 1 295 -17 2187 135 0 7 chr12 132059447 132059751 -11726704 - AluSx SINE Alu -10 302 1 662 274 180 14 chr12 132059888 132060304 -11726151 - HAL1b LINE L1 -7 1341 857 189 0 0 0 chr12 132060312 132060333 -11726122 + (T)n Simple_repeat Simple_repeat 1 21 0 1882 133 10 68 chr12 132060805 132061114 -11725341 + AluSx SINE Alu 3 293 -19 538 226 19 31 chr12 132061198 132061357 -11725098 - AluSp/q SINE Alu 0 313 157 655 203 39 7 chr12 132061766 132061919 -11724536 + L1MA7 LINE L1 6129 6286 -5 1723 150 38 27 chr12 132061936 132062229 -11724226 + AluJo SINE Alu 7 302 -10 204 241 17 17 chr12 132062548 132062606 -11723849 + GA-rich Low_complexity Low_complexity 1 58 0 227 269 0 54 chr12 132062654 132062784 -11723671 + L2 LINE L2 2833 2955 -317 2263 89 10 0 chr12 132062817 132063110 -11723345 - AluSx SINE Alu -11 301 6 355 192 14 0 chr12 132063118 132063191 -11723264 + Charlie4 DNA MER1_type 1851 1924 -37 951 268 49 53 chr12 132063552 132063587 -11722868 - L1MC4a LINE L1 -1856 5952 5918 2203 123 0 22 chr12 132063587 132063904 -11722551 - AluJo SINE Alu -2 310 1 951 268 49 53 chr12 132063904 132064319 -11722136 - L1MC4a LINE L1 -1890 5918 5504 204 270 14 27 chr12 132064662 132064736 -11721719 + MIR3 SINE MIR 121 193 -15 1891 146 14 14 chr12 132064748 132065036 -11721419 - AluJo SINE Alu -24 288 1 1721 168 7 42 chr12 132065038 132065202 -11721253 - AluJo SINE Alu -13 299 150 2545 69 0 3 chr12 132065202 132065506 -11720949 - AluY SINE Alu -8 303 1 1721 168 7 42 chr12 132065506 132065651 -11720804 - AluJo SINE Alu -162 150 1 252 200 0 0 chr12 132065841 132065896 -11720559 + (CA)n Simple_repeat Simple_repeat 2 56 0 2435 64 6 10 chr12 132066053 132066364 -11720091 + AluY SINE Alu 1 310 -1 2226 115 0 10 chr12 132066541 132066845 -11719610 + AluSx SINE Alu 1 301 -11 2206 125 0 3 chr12 132066845 132067140 -11719315 + AluSc SINE Alu 1 294 -15 860 283 43 0 chr12 132067831 132068064 -11718391 + MIR SINE MIR 3 245 -17 1770 209 21 72 chr12 132068434 132068624 -11717831 - L1ME1 LINE L1 -172 5992 5794 464 60 0 210 chr12 132068624 132068685 -11717770 - MADE1 DNA Mariner 0 80 46 2027 116 0 0 chr12 132068685 132068952 -11717503 + AluSx SINE Alu 25 291 -21 464 60 0 210 chr12 132068952 132068990 -11717465 - MADE1 DNA Mariner -34 46 2 1770 209 21 72 chr12 132068990 132069173 -11717282 - L1ME1 LINE L1 -370 5794 5603 1736 177 0 0 chr12 132069173 132069444 -11717011 - AluJo SINE Alu -12 300 30 1770 209 21 72 chr12 132069444 132069705 -11716750 - L1ME1 LINE L1 -561 5603 5353 2144 136 0 0 chr12 132069854 132070148 -11716307 + AluSx SINE Alu 1 294 -18 2426 92 0 0 chr12 132070150 132070444 -11716011 + AluSx SINE Alu 1 294 -18 22 70 0 0 chr12 132070445 132070488 -11715967 + AT_rich Low_complexity Low_complexity 1 43 0 816 159 8 0 chr12 132070738 132070864 -11715591 + AluJo/FLAM SINE Alu 1 127 -175 1214 154 42 145 chr12 132070864 132071031 -11715424 - AluSx SINE Alu -4 298 115 1883 162 3 3 chr12 132071031 132071328 -11715127 - AluSq SINE Alu -16 297 1 1214 154 42 145 chr12 132071328 132071360 -11715095 - AluSx SINE Alu -187 115 81 1730 166 17 24 chr12 132071360 132071649 -11714806 + AluJo SINE Alu 1 287 -25 1214 154 42 145 chr12 132071649 132071779 -11714676 - AluSx SINE Alu -221 81 2 1818 113 0 0 chr12 132072871 132073110 -11713345 + AluSx SINE Alu 53 291 -21 581 217 23 8 chr12 132073117 132073246 -11713209 + FLAM_C SINE Alu 1 131 -2 990 176 31 0 chr12 132073333 132073492 -11712963 - FRAM SINE Alu -1 165 2 2360 103 0 0 chr12 132073497 132073799 -11712656 - AluSq SINE Alu -11 302 1 198 0 0 0 chr12 132073802 132073824 -11712631 + (T)n Simple_repeat Simple_repeat 1 22 0 2185 118 0 38 chr12 132073955 132074124 -11712331 - AluSc SINE Alu -8 301 148 2529 53 13 0 chr12 132074124 132074424 -11712031 - AluY SINE Alu -7 304 1 2185 118 0 38 chr12 132074424 132074567 -11711888 - AluSc SINE Alu -161 148 1 790 138 147 76 chr12 132074967 132074999 -11711456 - L1MB7 LINE L1 0 6184 6156 1681 184 7 30 chr12 132074999 132075304 -11711151 + AluJb SINE Alu 1 298 -14 790 138 147 76 chr12 132075304 132075496 -11710959 - L1MB7 LINE L1 -28 6156 5944 1720 145 0 57 chr12 132075579 132075918 -11710537 - AluY SINE Alu 0 311 1 1688 84 0 9 chr12 132075968 132076181 -11710274 - AluSc SINE Alu -98 211 1 192 274 144 39 chr12 132076189 132076342 -11710113 + L2 LINE L2 3145 3313 0 325 274 0 0 chr12 132076398 132076482 -11709973 + L1MB8 LINE L1 6085 6168 -10 2266 112 3 0 chr12 132076893 132077189 -11709266 + AluSq SINE Alu 1 297 -16 2092 78 78 14 chr12 132077191 132077563 -11708892 + AluY SINE Alu 1 390 0 2151 108 4 0 chr12 132077651 132077967 -11708488 + AluSq SINE Alu 4 320 0 2397 89 20 6 chr12 132077967 132078316 -11708139 + L1P5 LINE L1 5433 5786 -365 2444 89 0 3 chr12 132078317 132078621 -11707834 + AluSq SINE Alu 1 303 -10 1540 177 0 30 chr12 132079201 132079466 -11706989 - AluJo SINE Alu -52 260 4 1825 159 0 14 chr12 132079626 132079921 -11706534 - AluJo SINE Alu -15 297 7 225 132 0 0 chr12 132079992 132080030 -11706425 + (A)n Simple_repeat Simple_repeat 1 38 0 668 230 0 0 chr12 132080237 132080350 -11706105 + FLAM_C SINE Alu 6 118 -25 2013 138 10 0 chr12 132080396 132080687 -11705768 + AluSq SINE Alu 2 295 -18 1607 142 4 0 chr12 132080848 132081080 -11705375 + AluSx SINE Alu 45 277 -35 188 296 136 11 chr12 132081320 132081408 -11705047 + MIR SINE MIR 49 147 -115 406 303 205 5 chr12 132081510 132081705 -11704750 + MIR SINE MIR 12 245 -17 2067 54 0 0 chr12 132081816 132082056 -11704399 + AluY SINE Alu 1 240 -71 387 0 0 0 chr12 132082056 132082099 -11704356 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1516 184 19 0 chr12 132082187 132082448 -11704007 + AluSx SINE Alu 4 269 -43 2206 84 10 29 chr12 132082767 132083075 -11703380 - AluY SINE Alu -9 302 1 2443 81 3 0 chr12 132083087 132083395 -11703060 - AluY SINE Alu -2 309 1 349 269 67 0 chr12 132083427 132083531 -11702924 - MIR SINE MIR -62 200 90 1681 122 63 66 chr12 132083563 132083732 -11702723 - AluSg SINE Alu -24 286 117 3006 47 3 3 chr12 132083732 132084093 -11702362 - L1PA7 LINE L1 -6 6148 5788 1681 122 63 66 chr12 132084093 132084210 -11702245 - AluSg SINE Alu -193 117 1 952 129 0 0 chr12 132084239 132084371 -11702084 + AluSq/x SINE Alu 1 132 -180 2229 106 3 10 chr12 132084374 132084677 -11701778 + AluSx SINE Alu 1 301 -11 816 196 25 12 chr12 132084731 132084894 -11701561 - AluJo SINE Alu 0 302 138 1031 9 0 0 chr12 132084898 132085010 -11701445 - AluY SINE Alu -12 299 188 729 199 0 35 chr12 132085010 132085151 -11701304 - AluJo SINE Alu -171 141 6 426 322 70 10 chr12 132085166 132085452 -11701003 - L1MEd LINE L1 -4955 834 544 2464 87 3 3 chr12 132085578 132085887 -11700568 - AluSp SINE Alu -4 309 1 759 94 0 0 chr12 132086247 132086353 -11700102 - AluSg/x SINE Alu -7 302 197 2051 115 24 0 chr12 132086521 132086645 -11699810 + AluSx SINE Alu 1 121 -191 180 0 0 0 chr12 132086645 132086665 -11699790 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2051 115 24 0 chr12 132086665 132086835 -11699620 + AluSx SINE Alu 121 302 -10 259 324 48 38 chr12 132086836 132087046 -11699409 + L1MEd LINE L1 1029 1240 -4879 198 265 20 0 chr12 132087683 132087732 -11698723 - MIR SINE MIR -112 150 101 1346 171 0 14 chr12 132087787 132088004 -11698451 - AluJb SINE Alu -13 299 86 383 275 9 28 chr12 132088102 132088211 -11698244 + L2 LINE L2 3152 3258 -55 453 155 0 14 chr12 132088213 132088284 -11698171 - AluJ/FLAM SINE Alu -242 70 1 762 174 90 32 chr12 132088319 132088474 -11697981 + FRAM SINE Alu 1 164 -12 1326 165 0 9 chr12 132088517 132088729 -11697726 + AluJo SINE Alu 87 296 -16 2872 16 0 0 chr12 132089004 132089315 -11697140 + AluYb8 SINE Alu 1 311 -7 2181 108 0 49 chr12 132089384 132089530 -11696925 + AluSc SINE Alu 1 153 -156 2291 107 0 3 chr12 132089530 132089839 -11696616 + AluSg SINE Alu 1 308 -2 2181 108 0 49 chr12 132089839 132090017 -11696438 + AluSc SINE Alu 153 309 0 1950 102 87 0 chr12 132090039 132090314 -11696141 + AluSg SINE Alu 1 299 -11 558 262 6 48 chr12 132090432 132090600 -11695855 + L2 LINE L2 3152 3312 -1 2535 74 0 0 chr12 132090679 132090977 -11695478 - AluY SINE Alu -13 298 1 2576 62 3 0 chr12 132090989 132091297 -11695158 - AluY SINE Alu -2 309 1 357 267 57 0 chr12 132091329 132091434 -11695021 - MIR SINE MIR -62 200 90 1838 123 52 58 chr12 132091447 132091639 -11694816 - AluSg SINE Alu -3 307 116 3036 47 3 0 chr12 132091639 132091999 -11694456 - L1PA7 LINE L1 -6 6148 5788 1838 123 52 58 chr12 132091999 132092115 -11694340 - AluSg SINE Alu -194 116 1 2275 105 0 16 chr12 132092144 132092279 -11694176 + AluSq SINE Alu 1 137 -176 2054 129 3 23 chr12 132092279 132092588 -11693867 + AluSx SINE Alu 1 303 -9 2275 105 0 16 chr12 132092588 132092765 -11693690 + AluSq SINE Alu 137 308 -5 372 22 0 0 chr12 132092765 132092810 -11693645 + (CA)n Simple_repeat Simple_repeat 2 46 0 2251 109 10 0 chr12 132092818 132093120 -11693335 + AluSx SINE Alu 1 305 -7 902 224 54 13 chr12 132093472 132093902 -11692553 + MLT1D LTR MaLR 2 505 0 2087 121 7 3 chr12 132094674 132094971 -11691484 - AluJo SINE Alu -14 298 1 228 35 0 0 chr12 132095288 132095317 -11691138 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2467 48 10 3 chr12 132095748 132096042 -11690413 + AluY SINE Alu 2 297 -14 2422 107 0 0 chr12 132096514 132096824 -11689631 + AluSx SINE Alu 1 310 -2 1652 170 0 21 chr12 132097027 132097315 -11689140 - AluJo SINE Alu -30 282 1 360 252 71 7 chr12 132097315 132097470 -11688985 - L1ME4a LINE L1 -219 5902 5738 1571 146 0 0 chr12 132097517 132097737 -11688718 - AluSx SINE Alu -92 220 1 405 0 0 0 chr12 132098169 132098214 -11688241 + (TG)n Simple_repeat Simple_repeat 2 46 0 2537 84 0 0 chr12 132099073 132099383 -11687072 + AluY SINE Alu 1 310 -1 2331 101 0 0 chr12 132099428 132099724 -11686731 + AluSx SINE Alu 1 296 -16 320 300 73 40 chr12 132099992 132100142 -11686313 + MIR3 SINE MIR 29 183 -25 891 293 150 12 chr12 132100332 132100731 -11685724 + L2 LINE L2 2858 3311 -2 216 0 0 0 chr12 132103414 132103438 -11683017 + (T)n Simple_repeat Simple_repeat 1 24 0 454 273 163 38 chr12 132103817 132104026 -11682429 + MIR SINE MIR 14 248 -14 2024 142 3 0 chr12 132104181 132104483 -11681972 - AluSx SINE Alu -9 303 1 768 168 61 0 chr12 132104495 132104626 -11681829 - FLAM_C SINE Alu -4 139 1 22 35 0 0 chr12 132105105 132105134 -11681321 + AT_rich Low_complexity Low_complexity 1 29 0 376 196 98 0 chr12 132105807 132105909 -11680546 + MIR SINE MIR 79 190 -72 400 302 67 17 chr12 132106098 132106277 -11680178 + MIR SINE MIR 75 262 0 578 166 51 52 chr12 132106451 132106615 -11679840 + L1MB3 LINE L1 6022 6176 0 1962 145 21 0 chr12 132106634 132106924 -11679531 + AluJb SINE Alu 1 296 -16 2430 57 7 0 chr12 132107519 132107820 -11678635 - AluSp SINE Alu -10 303 1 266 322 148 0 chr12 132108099 132108214 -11678241 + L2 LINE L2 3138 3269 -3 216 239 30 15 chr12 132108350 132108417 -11678038 - L2 LINE L2 -1010 2304 2237 794 159 15 8 chr12 132109258 132109390 -11677065 + FLAM_A SINE Alu 1 133 0 514 340 97 31 chr12 132109457 132110062 -11676393 - L2 LINE L2 -1 3271 2622 555 290 45 6 chr12 132110349 132110525 -11675930 + MIR SINE MIR 80 262 0 1313 169 109 8 chr12 132110655 132110921 -11675534 - AluJo SINE Alu -19 293 1 2754 16 0 0 chr12 132111278 132111589 -11674866 + AluY SINE Alu 1 311 0 550 216 193 20 chr12 132111597 132111954 -11674501 - L1ME4a LINE L1 -24 6097 5679 197 316 18 0 chr12 132113176 132113233 -11673222 - MER5A DNA MER1_type -60 129 72 2245 81 27 7 chr12 132113482 132113780 -11672675 + AluSc SINE Alu 1 304 -5 328 266 46 0 chr12 132114817 132114926 -11671529 + L1MC5 LINE L1 6717 6830 -1131 522 243 23 56 chr12 132114962 132115176 -11671279 + L1MC5 LINE L1 6941 7147 -814 451 266 95 16 chr12 132115177 132115429 -11671026 + L1MC5 LINE L1 7636 7907 -54 1305 199 8 16 chr12 132115547 132115803 -11670652 - AluJb SINE Alu -57 255 2 813 175 0 0 chr12 132115807 132115927 -11670528 - FLAM_A SINE Alu -17 125 6 248 293 120 58 chr12 132115931 132116122 -11670333 + MIR SINE MIR 52 254 -8 276 119 0 0 chr12 132116297 132116339 -11670116 + MER91 DNA MER1_type 73 114 -26 228 196 22 0 chr12 132116417 132116463 -11669992 + L2 LINE L2 3266 3312 -1 710 210 0 7 chr12 132116569 132116707 -11669748 - FLAM_C SINE Alu -1 142 6 1811 107 0 16 chr12 132117176 132117429 -11669026 - AluSx SINE Alu -59 253 5 214 329 0 25 chr12 132117431 132117510 -11668945 - L2 LINE L2 -10 3262 3186 342 269 118 37 chr12 132117602 132118035 -11668420 - LTR33 LTR ERVL 0 521 2 683 220 150 9 chr12 132118035 132118262 -11668193 - MLT1C LTR MaLR 0 467 209 2173 127 0 0 chr12 132118309 132118617 -11667838 + AluSx SINE Alu 1 308 -4 293 288 38 0 chr12 132118722 132118802 -11667653 - L2 LINE L2 -5 3267 3185 345 311 61 38 chr12 132118949 132119081 -11667374 + MIR SINE MIR 6 140 -122 790 170 50 21 chr12 132119094 132119235 -11667220 + AluJo SINE Alu 1 145 -167 2280 86 3 0 chr12 132119235 132119536 -11666919 + AluY SINE Alu 1 302 -9 33 56 0 0 chr12 132119777 132119831 -11666624 + GC_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr12 132120025 132120057 -11666398 + GC_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr12 132120103 132120145 -11666310 + GC_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr12 132120183 132120226 -11666229 + GC_rich Low_complexity Low_complexity 1 43 0 210 234 85 32 chr12 132120277 132120371 -11666084 + (CTGGGG)n Simple_repeat Simple_repeat 2 100 0 1990 105 3 18 chr12 132121687 132121972 -11664483 - AluSx SINE Alu -11 301 21 248 289 53 35 chr12 132122872 132122986 -11663469 + MIR SINE MIR 77 192 -70 1141 203 160 53 chr12 132123000 132123413 -11663042 + MLT1D LTR MaLR 49 505 0 1315 248 29 3 chr12 132123977 132124292 -11662163 - MER33 DNA MER1_type 0 324 2 513 266 123 0 chr12 132124801 132124955 -11661500 + MIR SINE MIR 89 261 -1 1997 108 45 0 chr12 132128209 132128497 -11657958 - AluSx SINE Alu -11 301 1 1588 151 60 14 chr12 132128499 132128784 -11657671 - AluJo SINE Alu -14 298 1 202 281 47 0 chr12 132129308 132129372 -11657083 + MIR SINE MIR 117 183 -79 228 336 32 40 chr12 132129919 132130044 -11656411 - L2 LINE L2 -25 3288 3165 481 281 94 6 chr12 132130588 132130748 -11655707 + MIR SINE MIR 10 183 -79 2033 110 55 7 chr12 132135773 132136065 -11650390 + AluSx SINE Alu 1 306 -6 195 208 83 42 chr12 132137992 132138064 -11648391 + MIR3 SINE MIR 118 192 -16 364 183 144 77 chr12 132138577 132138785 -11647670 - Charlie1 DNA MER1_type -74 2687 2466 299 221 200 0 chr12 132138851 132138946 -11647509 - Charlie1 DNA MER1_type -2647 114 1 2816 196 45 19 chr12 132141616 132142298 -11644157 - L1MB7 LINE L1 -202 5982 5283 1929 123 18 0 chr12 132148241 132148526 -11637929 - AluSx SINE Alu -22 290 1 232 263 91 114 chr12 132148781 132148956 -11637499 - MER5B DNA MER1_type -7 171 1 191 298 0 0 chr12 132149303 132149350 -11637105 - L2 LINE L2 -4 3268 3222 319 272 25 0 chr12 132149630 132149711 -11636744 + L2 LINE L2 3188 3270 -2 758 227 36 17 chr12 132149864 132150498 -11635957 - L1MD1 LINE L1 -2 6240 5557 1378 158 70 7 chr12 132152451 132152724 -11633731 - AluJo SINE Alu -13 299 10 1009 172 0 0 chr12 132153284 132153441 -11633014 + AluJb SINE Alu 136 292 -20 348 155 0 0 chr12 132153444 132153502 -11632953 + AluSc SINE Alu 129 186 -113 1218 265 95 65 chr12 132153676 132154358 -11632097 + L1ME3 LINE L1 5452 6154 -8 474 192 101 82 chr12 132159021 132159229 -11627226 + AluSx SINE Alu 2 213 -99 485 296 80 46 chr12 132159346 132159610 -11626845 + L1M4 LINE L1 2896 3305 -2841 1853 194 32 41 chr12 132160708 132160740 -11625715 - L1MB5 LINE L1 -10 6164 6133 2101 137 7 0 chr12 132160740 132161040 -11625415 - AluJo SINE Alu -10 302 1 1853 194 32 41 chr12 132161040 132161446 -11625009 - L1MB5 LINE L1 -41 6133 5730 1857 176 3 3 chr12 132161446 132161752 -11624703 - AluJo SINE Alu -4 308 3 228 114 0 0 chr12 132161753 132161788 -11624667 - L1MB5 LINE L1 -569 5609 5575 297 284 203 17 chr12 132161828 132162060 -11624395 + L2 LINE L2 2996 3270 -2 1900 90 102 0 chr12 132162151 132162463 -11623992 - AluSx SINE Alu 0 338 1 435 273 90 70 chr12 132162716 132162905 -11623550 + MIR SINE MIR 2 199 -63 1972 139 0 30 chr12 132162905 132163206 -11623249 + AluJb SINE Alu 1 292 -20 435 273 90 70 chr12 132163206 132163272 -11623183 + MIR SINE MIR 199 262 0 386 194 0 20 chr12 132163365 132163415 -11623040 + L1MB3 LINE L1 6087 6136 -47 1896 167 3 3 chr12 132163415 132163721 -11622734 + AluJo SINE Alu 1 306 -6 386 194 0 20 chr12 132163721 132163768 -11622687 + L1MB3 LINE L1 6136 6182 -1 2210 114 13 0 chr12 132163777 132164075 -11622380 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 132164112 132164133 -11622322 + AT_rich Low_complexity Low_complexity 1 21 0 2279 105 3 37 chr12 132164638 132164961 -11621494 - AluSx SINE Alu 0 312 1 1828 165 0 53 chr12 132165069 132165391 -11621064 - AluJo SINE Alu -6 306 2 1084 153 0 0 chr12 132165392 132165549 -11620906 - AluJb SINE Alu -19 293 137 2503 58 3 10 chr12 132165562 132165871 -11620584 - AluY SINE Alu -4 307 1 452 283 22 14 chr12 132166455 132166593 -11619862 + MIR3 SINE MIR 18 156 -52 984 174 0 24 chr12 132166646 132166813 -11619642 - FRAM SINE Alu -14 162 1 437 216 0 11 chr12 132166817 132166905 -11619550 - L2 LINE L2 -3 3310 3224 1822 174 0 17 chr12 132167704 132168003 -11618452 - AluJb SINE Alu -18 294 1 3224 178 39 53 chr12 132168005 132168249 -11618206 + L1MB5 LINE L1 5462 5708 -466 2287 89 0 0 chr12 132168249 132168551 -11617904 + AluY SINE Alu 1 302 0 3224 178 39 53 chr12 132168551 132169028 -11617427 + L1MB5 LINE L1 5708 6174 0 2120 133 3 7 chr12 132169045 132169346 -11617109 + AluSx SINE Alu 1 300 -12 1695 166 3 40 chr12 132169388 132169707 -11616748 + AluJo SINE Alu 1 308 0 485 219 81 28 chr12 132169720 132169960 -11616495 + L1MC2 LINE L1 6171 6397 -1585 2452 76 7 0 chr12 132169960 132170251 -11616204 - AluSg SINE Alu -17 293 1 485 219 81 28 chr12 132170251 132170271 -11616184 + L1MC2 LINE L1 6397 7981 -1 563 244 89 17 chr12 132170784 132170964 -11615491 + MLT1D LTR MaLR 1 193 -312 2269 121 3 0 chr12 132170967 132171265 -11615190 + AluSx SINE Alu 1 299 -13 2172 95 27 10 chr12 132173194 132173490 -11612965 - AluSg SINE Alu -9 301 1 386 313 28 14 chr12 132173494 132173638 -11612817 + L2 LINE L2 3168 3313 0 210 323 75 0 chr12 132173689 132173782 -11612673 - MIR SINE MIR -118 144 45 2264 131 0 0 chr12 132173794 132174106 -11612349 - AluSx SINE Alu 0 312 1 2223 117 7 3 chr12 132174106 132174403 -11612052 - AluSx SINE Alu -13 299 1 2044 110 7 26 chr12 132174406 132174716 -11611739 - AluSx SINE Alu 0 312 9 2275 121 0 3 chr12 132178428 132178735 -11607720 + AluSx SINE Alu 1 306 -6 294 288 38 0 chr12 132178842 132178922 -11607533 - L2 LINE L2 -5 3267 3185 320 311 61 38 chr12 132179069 132179201 -11607254 + MIR SINE MIR 6 140 -122 1605 186 22 50 chr12 132179214 132179355 -11607100 + AluJo SINE Alu 1 144 -168 2451 71 3 3 chr12 132179355 132179649 -11606806 + AluSc SINE Alu 1 294 -15 1605 186 22 50 chr12 132179649 132179824 -11606631 + AluJo SINE Alu 144 308 -4 1815 169 3 13 chr12 132179835 132180143 -11606312 - AluJb SINE Alu -7 305 1 283 259 0 71 chr12 132180434 132180519 -11605936 + MIR SINE MIR 183 261 -1 2391 100 6 0 chr12 132180691 132181002 -11605453 + AluSp SINE Alu 1 313 0 452 162 17 26 chr12 132181003 132181120 -11605335 + GA-rich Low_complexity Low_complexity 2 117 0 379 250 0 0 chr12 132182114 132182194 -11604261 + LTR8 LTR ERV1 612 691 0 315 0 0 0 chr12 132182199 132182234 -11604221 + (CATTA)n Simple_repeat Simple_repeat 5 39 0 2268 108 0 0 chr12 132182236 132182531 -11603924 - AluSx SINE Alu -17 295 1 1660 150 83 15 chr12 132182531 132182870 -11603585 - L1MC3 LINE L1 -252 7533 7172 2133 120 14 0 chr12 132182871 132183163 -11603292 - AluSx SINE Alu -16 296 1 464 250 23 41 chr12 132183163 132183335 -11603120 + L2 LINE L2 2879 3047 -225 2267 120 0 0 chr12 132183375 132183666 -11602789 - AluSx SINE Alu -21 291 1 356 312 99 7 chr12 132183685 132183826 -11602629 + L2 LINE L2 2328 2481 -833 186 43 0 0 chr12 132183962 132183985 -11602470 + (T)n Simple_repeat Simple_repeat 1 23 0 1186 150 36 0 chr12 132184002 132184222 -11602233 - L1MC3 LINE L1 -13 7772 7545 1128 202 27 30 chr12 132184222 132184269 -11602186 + LTR8 LTR ERV1 1 47 -644 2470 71 0 0 chr12 132184269 132184566 -11601889 + AluY SINE Alu 1 297 -14 1128 202 27 30 chr12 132184566 132184780 -11601675 + LTR8 LTR ERV1 47 261 -430 673 119 0 28 chr12 132184780 132184889 -11601566 + AluSq/x SINE Alu 1 106 -207 297 0 0 0 chr12 132185507 132185540 -11600915 + (A)n Simple_repeat Simple_repeat 1 33 0 1916 129 10 68 chr12 132185622 132185931 -11600524 - AluSx SINE Alu -19 293 3 678 285 174 14 chr12 132186418 132186849 -11599606 + HAL1b LINE L1 842 1341 -7 2192 135 0 7 chr12 132186986 132187290 -11599165 + AluSx SINE Alu 1 302 -10 1039 176 0 0 chr12 132187945 132188104 -11598351 - AluJb SINE Alu -17 295 137 334 274 0 0 chr12 132188336 132188420 -11598035 - L1MB8 LINE L1 -10 6168 6085 2247 108 10 3 chr12 132188637 132188944 -11597511 + AluSc SINE Alu 1 309 0 895 216 196 61 chr12 132189020 132189190 -11597265 + MLT1D LTR MaLR 1 147 -358 2314 85 6 47 chr12 132189190 132189508 -11596947 - AluSx SINE Alu -7 305 1 895 216 196 61 chr12 132189508 132189782 -11596673 + MLT1D LTR MaLR 147 505 0 390 260 121 40 chr12 132189782 132190211 -11596244 + LTR33 LTR ERVL 2 517 -4 199 329 0 25 chr12 132190307 132190386 -11596069 + L2 LINE L2 3186 3262 -10 1898 107 0 16 chr12 132190388 132190641 -11595814 + AluSx SINE Alu 5 253 -59 288 0 0 0 chr12 132191056 132191088 -11595367 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 906 153 0 0 chr12 132191088 132191212 -11595243 - AluSg SINE Alu -186 124 1 1330 170 82 35 chr12 132191215 132191379 -11595076 - AluJb SINE Alu -17 295 111 2109 117 17 0 chr12 132191379 132191678 -11594777 + AluSq SINE Alu 1 304 -9 1330 170 82 35 chr12 132191678 132191795 -11594660 - AluJb SINE Alu -201 111 1 26 93 0 0 chr12 132192714 132192789 -11593666 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 132192899 132192923 -11593532 + GC_rich Low_complexity Low_complexity 1 24 0 2730 23 0 16 chr12 132192986 132193296 -11593159 + AluY SINE Alu 1 305 -6 211 59 0 29 chr12 132193654 132193688 -11592767 + L2 LINE L2 3281 3313 0 2141 136 0 0 chr12 132193791 132194092 -11592363 - AluSx SINE Alu -11 301 1 686 309 27 14 chr12 132194270 132194493 -11591962 - MIR SINE MIR 0 262 37 364 307 36 14 chr12 132194497 132194637 -11591818 + L1MC4 LINE L1 7720 7862 -180 2292 110 7 0 chr12 132194974 132195275 -11591180 - AluSq SINE Alu -10 303 1 2046 115 49 3 chr12 132196264 132196551 -11589904 + AluSx SINE Alu 1 300 -12 2322 96 10 0 chr12 132196781 132197083 -11589372 + AluSx SINE Alu 5 309 -3 910 286 65 6 chr12 132197282 132197607 -11588848 + L1ME LINE L1 5309 5652 -518 552 203 189 27 chr12 132197609 132197757 -11588698 - MER5A DNA MER1_type -14 175 4 2402 108 0 0 chr12 132197805 132198111 -11588344 + AluSx SINE Alu 1 306 -6 991 171 14 60 chr12 132198158 132198375 -11588080 + AluJo SINE Alu 6 212 -100 1803 179 14 3 chr12 132198826 132198997 -11587458 - AluSg SINE Alu -11 299 122 216 0 0 0 chr12 132198997 132199021 -11587434 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1803 179 14 3 chr12 132199021 132199145 -11587310 - AluSg SINE Alu -188 122 1 1330 170 82 35 chr12 132199148 132199312 -11587143 - AluJb SINE Alu -17 295 111 2062 121 17 0 chr12 132199312 132199609 -11586846 + AluSq SINE Alu 1 302 -11 1330 170 82 35 chr12 132199609 132199726 -11586729 - AluJb SINE Alu -201 111 1 33 80 0 0 chr12 132200649 132200724 -11585731 + GC_rich Low_complexity Low_complexity 1 75 0 2551 29 7 19 chr12 132200920 132201228 -11585227 + AluY SINE Alu 1 304 -7 211 59 0 29 chr12 132201586 132201620 -11584835 + L2 LINE L2 3281 3313 0 2127 139 0 0 chr12 132201723 132202024 -11584431 - AluSx SINE Alu -11 301 1 686 309 27 14 chr12 132202202 132202425 -11584030 - MIR SINE MIR 0 262 37 364 307 36 14 chr12 132202429 132202569 -11583886 + L1MC4 LINE L1 7720 7862 -180 2299 107 7 0 chr12 132202908 132203207 -11583248 - AluSq SINE Alu -12 301 1 2042 115 49 3 chr12 132204196 132204483 -11581972 + AluSx SINE Alu 1 300 -12 2307 96 10 0 chr12 132204713 132205015 -11581440 + AluSx SINE Alu 5 309 -3 878 279 67 6 chr12 132205224 132205539 -11580916 + L1ME3A LINE L1 5319 5652 -518 594 158 211 30 chr12 132205556 132205689 -11580766 - MER5A DNA MER1_type -29 160 4 715 209 76 26 chr12 132205713 132205737 -11580718 + L1ME3A LINE L1 5643 5664 -506 2446 101 0 0 chr12 132205737 132206044 -11580411 + AluSx SINE Alu 1 307 -5 715 209 76 26 chr12 132206044 132206141 -11580314 + L1ME3A LINE L1 5664 5755 -415 2199 123 0 3 chr12 132206141 132206443 -11580012 + AluSg SINE Alu 1 301 -9 2460 64 0 3 chr12 132206443 132206796 -11579659 + AluY SINE Alu 1 311 0 715 209 76 26 chr12 132206796 132206951 -11579504 + L1ME3A LINE L1 5754 5936 -234 2484 76 3 0 chr12 132207522 132207824 -11578631 + AluSp SINE Alu 5 307 -6 1698 139 59 35 chr12 132207871 132208158 -11578297 + AluJb SINE Alu 6 299 -13 755 200 0 0 chr12 132208168 132208298 -11578157 + FLAM_A SINE Alu 1 130 -3 2313 100 3 0 chr12 132208582 132208872 -11577583 - AluSp SINE Alu -22 291 1 2273 93 21 0 chr12 132209584 132209873 -11576582 + AluSx SINE Alu 1 295 -17 1067 163 0 0 chr12 132209876 132210042 -11576413 + AluJo/FRAM SINE Alu 141 306 -6 992 123 6 12 chr12 132210309 132210408 -11576047 + L1MA5 LINE L1 5677 5776 -524 2153 109 0 3 chr12 132210408 132210693 -11575762 + AluSg SINE Alu 9 292 -18 992 123 6 12 chr12 132210693 132210756 -11575699 + L1MA5 LINE L1 5776 5838 -462 2446 90 3 0 chr12 132210771 132211072 -11575383 + AluSg SINE Alu 1 302 -8 400 233 35 9 chr12 132211080 132211196 -11575259 - L1MC4 LINE L1 -7 8035 7917 6861 118 8 12 chr12 132211277 132212250 -11574205 - LTR5 LTR ERVK 0 969 1 1563 115 130 30 chr12 132212298 132212568 -11573887 + AluJb SINE Alu 1 297 -15 546 161 8 16 chr12 132212572 132212696 -11573759 + GA-rich Low_complexity Low_complexity 2 124 0 270 207 0 0 chr12 132212771 132212829 -11573626 + GA-rich Low_complexity Low_complexity 4 61 0 183 288 180 27 chr12 132214514 132214625 -11571830 - L2 LINE L2 -221 3051 2924 409 298 26 0 chr12 132214922 132215036 -11571419 - L2 LINE L2 -4 3309 3193 431 37 0 0 chr12 132215094 132215148 -11571307 - MADE1 DNA Mariner -26 54 1 2349 91 0 3 chr12 132215716 132216014 -11570441 + AluSg SINE Alu 1 297 -13 310 290 65 28 chr12 132216111 132216218 -11570237 + L3 LINE CR1 1249 1359 -218 2319 98 20 0 chr12 132216585 132216890 -11569565 + AluSq SINE Alu 1 311 -2 254 343 149 8 chr12 132217676 132217810 -11568645 - L2 LINE L2 -4 3268 3116 2217 120 0 0 chr12 132218489 132218788 -11567667 - AluSg SINE Alu -11 299 1 401 218 5 66 chr12 132218976 132219173 -11567282 - AluY SINE Alu -124 187 3 862 263 22 45 chr12 132219269 132219581 -11566874 - MLT1K LTR MaLR -273 315 11 2401 62 3 7 chr12 132220231 132220540 -11565915 + AluY SINE Alu 1 308 -3 270 0 0 0 chr12 132220541 132220571 -11565884 + (CA)n Simple_repeat Simple_repeat 2 31 0 1307 172 0 38 chr12 132220601 132220839 -11565616 + AluJb SINE Alu 84 312 0 194 262 0 131 chr12 132220890 132221012 -11565443 + L2 LINE L2 3022 3127 -145 282 288 0 14 chr12 132221017 132221090 -11565365 + L2 LINE L2 3242 3313 0 2126 108 0 0 chr12 132221121 132221434 -11565021 - AluSg SINE Alu 0 313 1 774 228 126 64 chr12 132221775 132222148 -11564307 - MLT1C LTR MaLR -71 396 1 1870 125 30 52 chr12 132222152 132222457 -11563998 - AluJo SINE Alu -14 298 1 1923 125 10 24 chr12 132222467 132222778 -11563677 - AluSx SINE Alu 0 307 1 1942 184 0 0 chr12 132223080 132223390 -11563065 + AluSx SINE Alu 3 312 0 979 251 62 31 chr12 132223393 132223536 -11562919 + L1MC5 LINE L1 7440 7577 -384 2283 118 0 3 chr12 132223536 132223832 -11562623 + AluSc SINE Alu 1 295 -14 979 251 62 31 chr12 132223832 132224138 -11562317 + L1MC5 LINE L1 7577 7903 -58 2249 119 0 3 chr12 132224156 132224458 -11561997 + AluSx SINE Alu 1 301 -11 1421 100 6 0 chr12 132224466 132224646 -11561809 + AluSq SINE Alu 1 181 -132 2565 50 3 0 chr12 132224881 132225182 -11561273 - AluY SINE Alu -9 302 1 2601 147 16 30 chr12 132225374 132225877 -11560578 - L1MC1 LINE L1 0 6333 5838 2354 78 3 0 chr12 132225897 132226203 -11560252 + AluSg SINE Alu 1 307 0 1958 137 7 23 chr12 132226205 132226504 -11559951 + AluJb SINE Alu 1 294 -18 304 167 0 0 chr12 132226512 132226566 -11559889 + U2 snRNA snRNA 1 54 -134 1422 207 47 41 chr12 132226569 132226932 -11559523 + MLT1A1 LTR MaLR 1 365 0 351 0 0 0 chr12 132227410 132227449 -11559006 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2176 119 3 0 chr12 132227452 132227737 -11558718 - AluSx SINE Alu -26 286 1 205 268 0 18 chr12 132228015 132228071 -11558384 - L2 LINE L2 -566 2748 2694 752 188 0 8 chr12 132228074 132228207 -11558248 + FLAM_C SINE Alu 2 133 0 1121 95 0 3 chr12 132228344 132228566 -11557889 + AluSx SINE Alu 2 289 -23 1092 72 0 29 chr12 132228574 132228712 -11557743 + AluSc SINE Alu 1 134 -175 2012 109 38 14 chr12 132228713 132229006 -11557449 + AluSx SINE Alu 1 300 -12 227 269 0 54 chr12 132229039 132229169 -11557286 - L2 LINE L2 -317 2955 2833 204 241 17 17 chr12 132229217 132229275 -11557180 + CT-rich Low_complexity Low_complexity 1 58 0 1714 154 38 24 chr12 132229594 132229886 -11556569 - AluJo SINE Alu -10 302 7 537 187 41 16 chr12 132229903 132230026 -11556429 - L1MA7 LINE L1 -5 6286 6161 2197 119 0 3 chr12 132230281 132230574 -11555881 - AluSg SINE Alu -18 292 1 1060 98 0 0 chr12 132230579 132230711 -11555744 - AluSq/x SINE Alu -181 132 1 254 85 21 0 chr12 132230780 132230827 -11555628 + L1MB5 LINE L1 6127 6174 0 446 231 19 19 chr12 132230983 132231087 -11555368 + MLT1L LTR MaLR 512 615 0 555 148 246 42 chr12 132231247 132231389 -11555066 - FRAM SINE Alu -10 166 1 721 184 102 0 chr12 132231492 132231639 -11554816 + Tigger7 DNA MER2_type 89 250 -483 466 227 10 0 chr12 132231649 132231746 -11554709 + Tigger7 DNA MER2_type 2490 2587 0 2145 121 0 3 chr12 132231866 132232155 -11554300 - AluSx SINE Alu -24 288 1 336 115 0 0 chr12 132232164 132232216 -11554239 + MLT1D LTR MaLR 449 500 -5 451 299 5 33 chr12 132232642 132232826 -11553629 + CT-rich Low_complexity Low_complexity 1 179 0 * 481 343 6 11 chr12 132232689 132232870 -11553585 + C-rich Low_complexity Low_complexity 1 180 0 2223 108 3 0 chr12 132233030 132233325 -11553130 + AluSp SINE Alu 1 296 -17 2578 71 0 0 chr12 132233325 132233635 -11552820 + AluY SINE Alu 1 310 -1 238 158 0 0 chr12 132233697 132233735 -11552720 - MER3 DNA MER1_type -163 46 9 299 304 216 18 chr12 132233862 132234033 -11552422 - L2 LINE L2 -493 2821 2617 452 157 34 34 chr12 132234651 132234740 -11551715 + FRAM SINE Alu 73 161 -15 2127 125 10 0 chr12 132234760 132235063 -11551392 - AluSx SINE Alu -6 306 1 375 291 96 20 chr12 132235071 132235270 -11551185 - L1MC4 LINE L1 -547 7495 7282 1981 131 0 21 chr12 132235352 132235635 -11550820 + AluSx SINE Alu 1 277 -35 216 284 136 11 chr12 132235873 132235961 -11550494 + MIR SINE MIR 49 147 -115 259 214 202 0 chr12 132236155 132236239 -11550216 - FLAM_C SINE Alu -23 110 10 536 88 0 0 chr12 132237340 132237408 -11549047 + AluSq/x SINE Alu 53 120 -192 205 267 0 0 chr12 132237608 132237653 -11548802 + CT-rich Low_complexity Low_complexity 2 46 0 491 171 0 9 chr12 132237862 132237967 -11548488 + FLAM_A SINE Alu 30 133 -9 180 306 83 0 chr12 132238373 132238445 -11548010 + MIR SINE MIR 33 110 -152 2257 90 7 0 chr12 132238571 132238860 -11547595 + AluY SINE Alu 18 308 -3 1760 104 12 8 chr12 132239064 132239313 -11547142 - AluSc SINE Alu -59 250 1 2149 137 41 53 chr12 132239313 132239484 -11546971 - L1MA7 LINE L1 -185 6106 5935 2764 17 0 0 chr12 132239484 132239782 -11546673 - AluYa5 SINE Alu -12 299 2 2149 137 41 53 chr12 132239782 132240047 -11546408 - L1MA7 LINE L1 -356 5935 5675 311 183 0 28 chr12 132240060 132240131 -11546324 - Alu SINE Alu 0 302 234 678 178 0 0 chr12 132240464 132240582 -11545873 + AluSg/x SINE Alu 172 289 -21 621 209 23 8 chr12 132240589 132240718 -11545737 + FLAM_C SINE Alu 1 131 -2 1640 153 16 76 chr12 132240811 132240969 -11545486 - AluJo SINE Alu -17 295 164 2139 127 7 0 chr12 132240969 132241269 -11545186 - AluSq SINE Alu -11 302 1 1640 153 16 76 chr12 132241269 132241424 -11545031 - AluJo SINE Alu -148 164 1 2241 161 73 35 chr12 132241425 132241737 -11544718 - L1MB3 LINE L1 -356 5827 5529 192 40 0 0 chr12 132241737 132241762 -11544693 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2224 91 7 3 chr12 132241764 132242051 -11544404 - AluY SINE Alu -23 288 1 2241 161 73 35 chr12 132242051 132242227 -11544228 - L1MB3 LINE L1 -654 5529 5317 1281 150 0 0 chr12 132242238 132242431 -11544024 - AluSg/x SINE Alu 0 310 118 2339 122 0 0 chr12 132242432 132242743 -11543712 - AluY SINE Alu 0 311 1 1198 161 17 78 chr12 132242744 132242876 -11543579 - L1MB3 LINE L1 -823 5323 5185 2546 112 31 14 chr12 132242876 132243234 -11543221 - THE1B LTR MaLR 0 364 1 1198 161 17 78 chr12 132243234 132243245 -11543210 - L1MB3 LINE L1 -961 5185 5175 2078 156 13 0 chr12 132243245 132243553 -11542902 - AluSx SINE Alu 0 312 1 1198 161 17 78 chr12 132243553 132243769 -11542686 - L1MB3 LINE L1 -971 5175 4985 2354 91 0 13 chr12 132243769 132244077 -11542378 - AluSx SINE Alu -8 304 1 226 267 0 27 chr12 132244079 132244154 -11542301 + HsTC2 DNA Tc2 1826 1898 0 2260 81 3 3 chr12 132244437 132244762 -11541693 - AluSx SINE Alu 0 325 1 509 48 0 0 chr12 132244763 132244825 -11541630 - AluSq/x SINE Alu -176 136 75 1946 139 0 78 chr12 132244825 132245156 -11541299 - AluSx SINE Alu -5 307 3 1816 163 14 14 chr12 132245239 132245533 -11540922 + AluJo SINE Alu 1 294 -18 943 196 101 18 chr12 132245647 132245929 -11540526 - L1MB5 LINE L1 0 6180 5878 203 188 21 0 chr12 132245947 132245995 -11540460 + CT-rich Low_complexity Low_complexity 1 49 0 1612 168 13 32 chr12 132245995 132246310 -11540145 - AluJo SINE Alu -3 309 1 1962 174 10 18 chr12 132246314 132246705 -11539750 - L1MB5 LINE L1 -291 5883 5496 838 199 20 0 chr12 132246725 132246910 -11539545 - AluJo/FRAM SINE Alu 0 321 134 1155 193 147 13 chr12 132246910 132247148 -11539307 - AluJb SINE Alu -2 310 41 2078 126 23 3 chr12 132247175 132247477 -11538978 - AluSx SINE Alu 0 312 5 705 140 0 0 chr12 132247494 132247594 -11538861 + AluS SINE Alu 2 101 -211 882 164 53 0 chr12 132247710 132247881 -11538574 - AluSq SINE Alu -133 180 1 1949 108 34 44 chr12 132247884 132248056 -11538399 - AluSx SINE Alu -7 305 136 2359 87 0 3 chr12 132248056 132248354 -11538101 - AluSq SINE Alu -16 297 1 1949 108 34 44 chr12 132248354 132248476 -11537979 - AluSx SINE Alu -176 136 14 1872 177 0 0 chr12 132248626 132248925 -11537530 + AluJb SINE Alu 5 303 -9 1963 150 14 3 chr12 132249334 132249627 -11536828 + AluJb SINE Alu 1 296 -16 479 195 9 0 chr12 132249627 132249740 -11536715 + GA-rich Low_complexity Low_complexity 1 114 0 243 344 16 16 chr12 132249851 132249973 -11536482 - L2 LINE L2 -423 2891 2770 647 214 0 122 chr12 132249983 132250254 -11536201 - MER102b DNA MER1_type -1 340 103 401 351 58 10 chr12 132250332 132250540 -11535915 - L2 LINE L2 -559 2755 2538 2210 115 0 7 chr12 132250628 132250924 -11535531 - AluSx SINE Alu -18 294 1 188 135 27 0 chr12 132250933 132250970 -11535485 + CT-rich Low_complexity Low_complexity 3 40 0 2462 70 0 3 chr12 132250977 132251289 -11535166 - AluY SINE Alu 0 311 1 2375 92 0 0 chr12 132253862 132254167 -11532288 - AluSx SINE Alu -7 305 1 2174 109 17 0 chr12 132255089 132255382 -11531073 + AluSp SINE Alu 1 298 -15 424 249 14 143 chr12 132255455 132255563 -11530892 + MIR SINE MIR 1 121 -141 1793 154 0 34 chr12 132255563 132255861 -11530594 - AluJo SINE Alu -24 288 1 327 113 0 0 chr12 132255865 132255927 -11530528 + (TA)n Simple_repeat Simple_repeat 2 63 0 2298 88 3 3 chr12 132255927 132256221 -11530234 - AluY SINE Alu -17 294 1 424 249 14 143 chr12 132256221 132256323 -11530132 + MIR SINE MIR 122 189 -73 512 167 111 19 chr12 132256323 132256431 -11530024 + L2 LINE L2 3194 3311 -2 274 213 66 0 chr12 132256421 132256482 -11529973 + MIR SINE MIR 182 246 -16 * 1657 148 4 8 chr12 132257122 132257378 -11529077 - AluJb SINE Alu -10 302 48 403 192 0 0 chr12 132257774 132257847 -11528608 - MER45 DNA AcHobo 0 1581 1509 2178 82 3 10 chr12 132257848 132258141 -11528314 + AluY SINE Alu 1 291 -20 731 154 8 0 chr12 132258678 132258801 -11527654 + LTR49-int LTR ERV1 6083 6206 -125 286 182 36 0 chr12 132258801 132258856 -11527599 + MER66A LTR ERV1 284 340 -138 219 69 0 0 chr12 132258856 132258885 -11527570 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 882 169 0 0 chr12 132259032 132259162 -11527293 - FLAM_C SINE Alu 0 133 4 2212 100 10 19 chr12 132259164 132259473 -11526982 - AluSq SINE Alu -7 306 1 * 2283 99 3 3 chr12 132259473 132259776 -11526679 - AluSg SINE Alu -7 303 1 454 261 70 7 chr12 132259778 132259920 -11526535 + MIR SINE MIR 64 214 -48 1215 67 20 0 chr12 132259921 132260070 -11526385 + AluY SINE Alu 86 237 -74 208 184 20 0 chr12 132260144 132260193 -11526262 + (CAT)n Simple_repeat Simple_repeat 1 50 0 2285 109 3 0 chr12 132260323 132260625 -11525830 + AluSx SINE Alu 9 311 -1 580 212 26 0 chr12 132260876 132260989 -11525466 + L1MC1 LINE L1 6218 6333 0 2357 92 0 3 chr12 132260995 132261288 -11525167 + AluSg SINE Alu 1 292 -18 1571 137 7 32 chr12 132261297 132261575 -11524880 - MER57-int LTR ERV1 -5517 2020 1750 198 0 0 0 chr12 132262238 132262260 -11524195 + (T)n Simple_repeat Simple_repeat 1 22 0 1931 146 0 19 chr12 132264724 132265039 -11521416 + AluSx SINE Alu 1 309 -3 2306 118 0 0 chr12 132265584 132265889 -11520566 - AluSx SINE Alu -7 305 1 760 299 101 32 chr12 132265889 132266267 -11520188 - L2 LINE L2 -6 3307 2904 1347 198 68 52 chr12 132266278 132266526 -11519929 - MLT1C LTR MaLR -41 426 169 2054 144 3 6 chr12 132266526 132266838 -11519617 - AluSx SINE Alu -1 311 1 1347 198 68 52 chr12 132266838 132266958 -11519497 - MLT1C LTR MaLR -298 169 52 1884 156 0 3 chr12 132267212 132267669 -11518786 + AluJo SINE Alu 1 456 0 201 39 0 0 chr12 132267728 132267754 -11518701 + (TG)n Simple_repeat Simple_repeat 1 26 0 3072 150 43 87 chr12 132268129 132268786 -11517669 + LTR8 LTR ERV1 2 626 -65 2008 130 41 0 chr12 132268786 132269078 -11517377 - AluSx SINE Alu -8 304 1 3072 150 43 87 chr12 132269078 132269142 -11517313 + LTR8 LTR ERV1 626 691 0 1150 205 30 0 chr12 132269142 132269376 -11517079 + HUERS-P1 LTR ERV1 1 241 -6022 482 184 142 107 chr12 132269464 132269697 -11516758 + HUERS-P1 LTR ERV1 557 797 -5466 * 1051 108 15 87 chr12 132269687 132269882 -11516573 + HUERS-P1 LTR ERV1 1131 1311 -4952 2257 101 24 3 chr12 132269882 132270179 -11516276 + AluSq SINE Alu 3 305 -8 6277 22 0 4 chr12 132270197 132270876 -11515579 + SVA Other Other 711 1386 0 1391 144 4 21 chr12 132270877 132271120 -11515335 + MER31-int LTR ERV1 5490 5728 -1477 23 0 0 0 chr12 132271121 132271144 -11515311 + AT_rich Low_complexity Low_complexity 1 23 0 1445 111 45 5 chr12 132271170 132271368 -11515087 - AluJo SINE Alu -106 206 1 1599 122 27 0 chr12 132271368 132271631 -11514824 + MER31-int LTR ERV1 5407 5676 -655 582 117 0 0 chr12 132271631 132271708 -11514747 + FRAM SINE Alu 77 153 -23 377 205 13 13 chr12 132271717 132271795 -11514660 + MER31-int LTR ERV1 3465 4943 -1473 462 172 10 20 chr12 132271821 132271920 -11514535 + MER31-int LTR ERV1 4405 4502 -434 1128 159 69 54 chr12 132271941 132272218 -11514237 + MER31-int LTR ERV1 5916 6196 -135 637 122 0 0 chr12 132272379 132272461 -11513994 - AluS SINE Alu -229 83 2 752 188 0 8 chr12 132272598 132272731 -11513724 - FLAM_C SINE Alu 0 133 2 205 268 0 18 chr12 132272734 132272790 -11513665 + L2 LINE L2 2694 2748 -566 2176 119 3 0 chr12 132273068 132273353 -11513102 + AluSx SINE Alu 1 286 -26 441 0 0 0 chr12 132273356 132273405 -11513050 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1501 209 44 39 chr12 132273883 132274246 -11512209 - MLT1A1 LTR MaLR 0 365 1 304 167 0 0 chr12 132274249 132274303 -11512152 - U2 snRNA snRNA -134 54 1 1059 157 0 0 chr12 132274316 132274469 -11511986 - FRAM SINE Alu -13 153 1 1355 126 6 0 chr12 132274492 132274675 -11511780 - AluJo SINE Alu -128 184 1 803 182 27 21 chr12 132274675 132274862 -11511593 - L1MB7 LINE L1 -44 6140 5953 2711 49 0 3 chr12 132274928 132275236 -11511219 + AluY SINE Alu 1 307 -4 800 243 25 59 chr12 132275456 132275628 -11510827 + MLT1F1 LTR MaLR 1 143 -387 2015 138 0 20 chr12 132275628 132275925 -11510530 + AluJo SINE Alu 1 291 -21 800 243 25 59 chr12 132275925 132276052 -11510403 + MLT1F1 LTR MaLR 143 273 -257 421 212 35 35 chr12 132276055 132276168 -11510287 + MER45 DNA AcHobo 3 115 -925 600 174 74 0 chr12 132276171 132276292 -11510163 - L1MB8 LINE L1 -6 6172 6043 394 231 280 0 chr12 132276433 132276576 -11509879 + MLT1F1 LTR MaLR 408 590 0 1770 151 23 33 chr12 132276591 132276896 -11509559 + AluJo SINE Alu 1 302 -10 1814 136 16 45 chr12 132276905 132277213 -11509242 + AluSx SINE Alu 1 299 -13 366 129 0 0 chr12 132277213 132277275 -11509180 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 1132 192 41 20 chr12 132277276 132277521 -11508934 - MER39B-int LTR ERV1 -6081 250 1 2886 161 75 34 chr12 132277522 132277721 -11508734 - MER39B LTR ERV1 -35 618 429 2322 89 0 0 chr12 132277721 132278012 -11508443 + AluSx SINE Alu 1 291 -21 2886 161 75 34 chr12 132278012 132278403 -11508052 - MER39B LTR ERV1 -224 429 4 4066 106 182 70 chr12 132278423 132279820 -11506635 + pTR5 LTR ERV1 741 2438 0 2317 99 26 0 chr12 132280099 132280401 -11506054 + AluSq SINE Alu 2 311 -2 274 272 119 68 chr12 132280502 132280591 -11505864 + HAL1 LINE L1 1113 1196 -1311 2432 50 40 7 chr12 132280591 132280892 -11505563 + AluY SINE Alu 1 311 0 274 272 119 68 chr12 132280892 132281196 -11505259 + HAL1 LINE L1 1196 1526 -981 2286 120 0 0 chr12 132281288 132281588 -11504867 + AluSx SINE Alu 1 300 -12 2032 135 3 14 chr12 132281646 132281942 -11504513 + AluJb SINE Alu 4 296 -16 2421 107 3 0 chr12 132282081 132282389 -11504066 + AluSx SINE Alu 1 309 -3 397 227 13 0 chr12 132282680 132282755 -11503700 + MER21B LTR ERV1 12 87 -776 2670 229 72 47 chr12 132282772 132283023 -11503432 + MER21B LTR ERV1 18 261 -602 1985 138 21 3 chr12 132283023 132283312 -11503143 - AluJb SINE Alu -16 296 3 2670 229 72 47 chr12 132283312 132283644 -11502811 + MER21B LTR ERV1 261 629 -234 2349 146 9 33 chr12 132283644 132283714 -11502741 + L1PA15 LINE L1 5757 5827 -338 1850 143 12 47 chr12 132283714 132284035 -11502420 + AluJb SINE Alu 1 310 -2 2349 146 9 33 chr12 132284035 132284383 -11502072 + L1PA15 LINE L1 5827 6165 0 2670 229 72 47 chr12 132284383 132284622 -11501833 + MER21B LTR ERV1 629 861 -2 1860 141 0 41 chr12 132284648 132284938 -11501517 + AluJb SINE Alu 1 278 -34 201 191 21 0 chr12 132284941 132284988 -11501467 + GA-rich Low_complexity Low_complexity 5 52 0 2937 3 0 0 chr12 132285073 132285382 -11501073 - AluYa5 SINE Alu -2 309 1 582 285 34 72 chr12 132285541 132285804 -11500651 - MIR SINE MIR 0 262 10 620 318 58 48 chr12 132285833 132286393 -11500062 + L1ME4a LINE L1 5267 5835 -286 2528 80 0 6 chr12 132286393 132286704 -11499751 + AluSc SINE Alu 1 309 0 620 318 58 48 chr12 132286704 132286768 -11499687 + L1ME4a LINE L1 5835 5897 -224 344 141 78 0 chr12 132286949 132287013 -11499442 + MER58A DNA MER1_type 1 69 -38 334 191 302 0 chr12 132287067 132287193 -11499262 - MER96 DNA MER1_type? 0 175 12 564 155 103 0 chr12 132287201 132287317 -11499138 + MER58A DNA MER1_type 88 215 -9 1693 166 19 39 chr12 132287363 132287670 -11498785 + AluJb SINE Alu 1 301 -11 2453 77 3 0 chr12 132287670 132287970 -11498485 + AluSg SINE Alu 1 301 -9 28 29 0 0 chr12 132288153 132288188 -11498267 + AT_rich Low_complexity Low_complexity 1 35 0 1919 130 40 10 chr12 132288241 132288540 -11497915 - AluSx SINE Alu -4 308 1 28 29 0 0 chr12 132288655 132288690 -11497765 + AT_rich Low_complexity Low_complexity 1 35 0 940 81 0 0 chr12 132288874 132288998 -11497457 - AluY SINE Alu -8 303 180 626 160 56 0 chr12 132289130 132289255 -11497200 + AluSg/x SINE Alu 156 287 -23 991 95 7 29 chr12 132289262 132289399 -11497056 + AluSc SINE Alu 1 134 -175 2098 93 38 14 chr12 132289400 132289690 -11496765 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr12 132289722 132289748 -11496707 + AT_rich Low_complexity Low_complexity 1 26 0 858 169 0 40 chr12 132289755 132289903 -11496552 - FRAM SINE Alu -22 154 13 1598 178 25 50 chr12 132289999 132290319 -11496136 - AluJo SINE Alu 0 312 1 1874 142 9 0 chr12 132290641 132290957 -11495498 - MLT1B LTR MaLR -20 370 52 239 313 0 0 chr12 132290965 132291045 -11495410 - L1MC3 LINE L1 -1827 5958 5879 298 75 0 0 chr12 132291046 132291086 -11495369 + AluJb SINE Alu 85 124 -178 585 78 0 0 chr12 132291087 132291164 -11495291 + AluJ/FRAM SINE Alu 229 305 -7 33 0 0 0 chr12 132291189 132291222 -11495233 + AT_rich Low_complexity Low_complexity 1 33 0 352 236 38 9 chr12 132291334 132291440 -11495015 + L1MC4 LINE L1 7927 8035 -7 2751 32 0 0 chr12 132291448 132291756 -11494699 - AluY SINE Alu -3 308 1 985 252 28 43 chr12 132291839 132292161 -11494294 - MLT1K LTR MaLR -261 327 11 2472 68 0 0 chr12 132292813 132293123 -11493332 + AluY SINE Alu 1 310 -1 683 286 94 0 chr12 132293127 132293340 -11493115 - MIR SINE MIR 0 262 30 1495 171 46 86 chr12 132293383 132293694 -11492761 - L1MB5 LINE L1 0 6174 5852 2223 119 0 3 chr12 132293694 132293989 -11492466 - AluSq SINE Alu -19 294 1 1495 171 46 86 chr12 132293989 132294179 -11492276 - L1MB5 LINE L1 -322 5852 5735 1914 181 85 16 chr12 132294179 132294566 -11491889 - MLT2D LTR ERVL 0 414 1 1495 171 46 86 chr12 132294566 132294768 -11491687 - L1MB5 LINE L1 -439 5735 5526 1028 152 0 0 chr12 132294986 132295144 -11491311 - AluSq SINE Alu -18 295 138 2364 84 3 3 chr12 132295448 132295746 -11490709 + AluY SINE Alu 1 298 -13 282 123 0 0 chr12 132295746 132295803 -11490652 + (TA)n Simple_repeat Simple_repeat 1 57 0 1780 158 0 34 chr12 132295807 132296105 -11490350 + AluJo SINE Alu 1 288 -24 312 307 0 40 chr12 132296112 132296213 -11490242 - MIR SINE MIR -165 97 1 2119 114 0 7 chr12 132296289 132296586 -11489869 - AluSq SINE Alu -18 295 1 336 115 0 0 chr12 132296595 132296647 -11489808 + MLT1D LTR MaLR 449 500 -5 2416 89 3 9 chr12 132297165 132297299 -11489156 + AluSp SINE Alu 1 134 -179 1932 49 4 0 chr12 132297299 132297525 -11488930 + AluY SINE Alu 83 309 -2 2416 89 3 9 chr12 132297525 132297705 -11488750 + AluSp SINE Alu 134 313 0 2266 122 0 0 chr12 132297885 132298180 -11488275 - AluSx SINE Alu -17 295 1 2363 77 7 3 chr12 132298370 132298667 -11487788 - AluSq SINE Alu -15 298 1 2023 100 28 56 chr12 132298667 132298988 -11487467 - AluSx SINE Alu 0 312 1 1796 182 3 22 chr12 132299082 132299395 -11487060 - AluJb SINE Alu 0 312 6 516 269 25 12 chr12 132299732 132299892 -11486563 + MLT1L LTR MaLR 128 289 -326 2507 177 57 15 chr12 132299902 132300427 -11486028 + L1MB5 LINE L1 5578 6124 -50 2026 131 10 25 chr12 132300427 132300741 -11485714 - AluSq SINE Alu -4 309 1 1765 131 37 44 chr12 132300743 132300918 -11485537 - AluSx SINE Alu -3 309 135 2300 91 3 3 chr12 132300918 132301215 -11485240 - AluSq SINE Alu -16 297 1 1765 131 37 44 chr12 132301215 132301337 -11485118 - AluSx SINE Alu -177 135 14 29 70 0 0 chr12 132301618 132301675 -11484780 + AT_rich Low_complexity Low_complexity 1 57 0 451 309 124 6 chr12 132301689 132301867 -11484588 + MIR SINE MIR 46 244 -18 389 278 28 60 chr12 132301907 132302123 -11484332 - L1ME LINE L1 -413 5708 5500 2166 111 3 16 chr12 132302477 132302784 -11483671 - AluSx SINE Alu -9 303 1 1058 160 0 17 chr12 132302844 132303019 -11483436 + FRAM SINE Alu 1 172 -4 407 301 23 8 chr12 132303094 132303227 -11483228 + L2 LINE L2 2645 2779 -535 215 309 9 64 chr12 132303416 132303526 -11482929 + L2 LINE L2 2781 2884 -430 2284 93 0 0 chr12 132303657 132303946 -11482509 + AluSx SINE Alu 1 289 -23 250 294 78 10 chr12 132304576 132304678 -11481777 - L2 LINE L2 0 3313 3205 1204 135 11 0 chr12 132304696 132304874 -11481581 - AluSq SINE Alu 0 313 134 2328 111 0 3 chr12 132304875 132305182 -11481273 - AluSx SINE Alu -6 306 1 322 188 0 0 chr12 132305242 132305306 -11481149 - L1MB8 LINE L1 -6 6172 6109 249 167 0 0 chr12 132305306 132305342 -11481113 + Alu SINE Alu 2 37 -265 2141 84 7 10 chr12 132305342 132305650 -11480805 - AluSx SINE Alu -5 307 1 809 213 13 0 chr12 132305651 132305801 -11480654 + AluJb SINE Alu 147 298 -14 1818 170 58 11 chr12 132305806 132306170 -11480285 - L1MB7 LINE L1 -66 6118 5738 2489 209 114 58 chr12 132306182 132306533 -11479922 - MER21B LTR ERV1 -11 852 522 1757 149 13 10 chr12 132306533 132306834 -11479621 + AluJb SINE Alu 1 302 -10 2489 209 114 58 chr12 132306834 132307272 -11479183 - MER21B LTR ERV1 -341 522 19 345 195 69 69 chr12 132307301 132307388 -11479067 - MER21B LTR ERV1 -776 87 1 4004 123 72 59 chr12 132307551 132308144 -11478311 - LTR1 LTR ERV1 0 785 177 2314 38 0 21 chr12 132308144 132308455 -11478000 - AluY SINE Alu 0 305 1 4004 123 72 59 chr12 132308455 132308635 -11477820 - LTR1 LTR ERV1 -608 177 1 4996 81 35 23 chr12 132308674 132309173 -11477282 + L1MA3 LINE L1 5553 6065 -240 2203 94 0 3 chr12 132309173 132309494 -11476961 + AluSq SINE Alu 1 313 0 4996 81 35 23 chr12 132309494 132309738 -11476717 + L1MA3 LINE L1 6065 6305 0 2167 101 7 0 chr12 132309754 132310052 -11476403 + AluSx SINE Alu 6 305 -7 2031 113 26 3 chr12 132310891 132311193 -11475262 - AluSx SINE Alu -3 309 1 658 170 96 159 chr12 132311194 132311547 -11474908 - MLT1C LTR MaLR -52 338 8 756 179 0 0 chr12 132311662 132311779 -11474676 + AluJb SINE Alu 2 118 -194 217 188 21 0 chr12 132311779 132311827 -11474628 + (TAA)n Simple_repeat Simple_repeat 3 51 0 280 265 15 0 chr12 132311871 132311939 -11474516 - L1ME3A LINE L1 -67 6103 6035 1679 137 10 14 chr12 132311995 132312288 -11474167 + AluSx SINE Alu 1 292 -20 1855 194 33 3 chr12 132312289 132312650 -11473805 - L1MB3 LINE L1 -9 6174 5803 1567 186 17 7 chr12 132312650 132312946 -11473509 - AluJb SINE Alu -13 299 1 29 60 0 0 chr12 132313013 132313063 -11473392 + AT_rich Low_complexity Low_complexity 1 50 0 906 125 0 0 chr12 132313133 132313269 -11473186 + FLAM_C SINE Alu 3 138 -5 397 275 131 74 chr12 132313296 132313540 -11472915 + L1MC/D LINE L1 5287 5544 -2264 226 291 0 0 chr12 132313571 132313626 -11472829 + L1MC/D LINE L1 5610 5664 -2144 1169 144 5 25 chr12 132313783 132313984 -11472471 + AluJo SINE Alu 3 199 -113 376 155 0 32 chr12 132314003 132314079 -11472376 - Alu SINE Alu -251 52 3 25 0 0 0 chr12 132314200 132314225 -11472230 + AT_rich Low_complexity Low_complexity 1 25 0 1879 143 3 0 chr12 132314276 132314563 -11471892 + AluSx SINE Alu 1 288 -24 1998 95 3 14 chr12 132314928 132315236 -11471219 - AluY SINE Alu 0 305 1 1076 150 38 58 chr12 132316009 132316101 -11470354 + MER33 DNA MER1_type 1 83 -2502 1896 154 0 0 chr12 132316101 132316393 -11470062 - AluJb SINE Alu -20 292 1 1076 150 38 58 chr12 132316393 132316543 -11469912 + MER33 DNA MER1_type 83 229 -95 347 167 15 0 chr12 132317229 132317295 -11469160 + MER33 DNA MER1_type 257 323 -1 307 167 17 17 chr12 132317322 132317382 -11469073 - MER58 DNA MER1_type -14 2406 2347 1807 152 163 14 chr12 132317384 132317752 -11468703 - MSTA LTR MaLR -5 423 1 677 262 41 23 chr12 132317752 132317965 -11468490 - MER58 DNA MER1_type -68 273 57 278 258 15 0 chr12 132317997 132318063 -11468392 + MER5A DNA MER1_type 9 75 -114 437 104 60 0 chr12 132318100 132318167 -11468288 + FAM SINE Alu 104 174 -11 185 194 265 61 chr12 132318168 132318266 -11468189 + MER5A DNA MER1_type 66 183 -6 * 487 202 26 18 chr12 132318244 132318358 -11468097 - MER5B DNA MER1_type -30 148 34 2027 137 0 10 chr12 132318358 132318671 -11467784 + AluSq SINE Alu 1 310 -3 288 0 0 0 chr12 132318672 132318704 -11467751 + (CA)n Simple_repeat Simple_repeat 2 33 0 1259 160 0 5 chr12 132318734 132318940 -11467515 + AluJb SINE Alu 84 288 -24 37 0 0 0 chr12 132318941 132318978 -11467477 + AT_rich Low_complexity Low_complexity 1 37 0 276 333 0 0 chr12 132319150 132319222 -11467233 + L2 LINE L2 3242 3313 0 2010 104 0 0 chr12 132319253 132319566 -11466889 - AluSg SINE Alu 0 313 1 867 228 126 64 chr12 132319907 132320280 -11466175 - MLT1C LTR MaLR -71 396 1 1688 122 36 53 chr12 132320284 132320587 -11465868 - AluJo SINE Alu -14 298 1 1781 125 10 28 chr12 132320597 132320909 -11465546 - AluSx SINE Alu 0 307 1 1788 184 0 0 chr12 132321211 132321521 -11464934 + AluSx SINE Alu 3 312 0 1049 242 64 33 chr12 132321524 132321667 -11464788 + L1MC5 LINE L1 7440 7577 -384 2170 112 0 3 chr12 132321667 132321963 -11464492 + AluSc SINE Alu 1 295 -14 1049 242 64 33 chr12 132321963 132322269 -11464186 + L1MC5 LINE L1 7577 7903 -58 2107 119 0 3 chr12 132322287 132322590 -11463865 + AluSx SINE Alu 1 302 -10 1925 128 3 0 chr12 132322598 132322886 -11463569 + AluSx SINE Alu 1 289 -23 633 239 0 0 chr12 132322901 132323018 -11463437 + FLAM_A SINE Alu 5 121 -12 634 203 68 0 chr12 132323035 132323153 -11463302 + FLAM_C SINE Alu 5 130 -3 32 26 0 0 chr12 132323153 132323192 -11463263 + AT_rich Low_complexity Low_complexity 1 39 0 1817 132 7 30 chr12 132323209 132323513 -11462942 - AluSq SINE Alu -16 297 1 1736 155 3 13 chr12 132323873 132324176 -11462279 - AluSc SINE Alu -9 300 1 2513 56 0 0 chr12 132324222 132324524 -11461931 + AluY SINE Alu 1 302 -9 28 29 0 0 chr12 132324707 132324742 -11461713 + AT_rich Low_complexity Low_complexity 1 35 0 1746 134 40 10 chr12 132324795 132325094 -11461361 - AluSx SINE Alu -4 308 1 308 149 30 0 chr12 132325192 132325259 -11461196 + Alu SINE Alu 233 301 0 2416 56 0 10 chr12 132325507 132325812 -11460643 - AluY SINE Alu -9 302 1 1009 94 0 0 chr12 132325815 132325953 -11460502 - FLAM_C SINE Alu -5 138 1 276 53 0 0 chr12 132326032 132326070 -11460385 + (TG)n Simple_repeat Simple_repeat 1 38 0 2134 100 0 37 chr12 132326177 132326498 -11459957 + AluSq SINE Alu 1 309 -4 1163 104 0 22 chr12 132326498 132326680 -11459775 + AluSg/x SINE Alu 134 311 -1 253 44 89 0 chr12 132326688 132326733 -11459722 + A-rich Low_complexity Low_complexity 5 53 0 1687 149 48 10 chr12 132327063 132327352 -11459103 + AluJb SINE Alu 1 300 -12 2036 96 0 38 chr12 132327423 132327736 -11458719 + AluSx SINE Alu 2 302 -10 2526 37 0 0 chr12 132327745 132328045 -11458410 + AluY SINE Alu 1 300 -11 1150 252 24 17 chr12 132328448 132328746 -11457709 + AluJb SINE Alu 2 301 -1 1055 106 0 0 chr12 132328751 132328892 -11457563 + AluSq/x SINE Alu 5 145 -168 1884 122 0 20 chr12 132328898 132329193 -11457262 + AluSx SINE Alu 14 302 -10 1976 89 58 20 chr12 132329397 132329690 -11456765 + AluY SINE Alu 1 304 -7 1552 74 0 61 chr12 132329804 132330033 -11456422 + AluSg/x SINE Alu 78 292 -18 597 134 179 18 chr12 132330163 132330275 -11456180 + FLAM_C SINE Alu 1 130 -3 2316 93 3 0 chr12 132330454 132330766 -11455689 + AluSp SINE Alu 1 313 0 1568 189 30 7 chr12 132330785 132331086 -11455369 + AluJb SINE Alu 1 308 -4 423 202 0 11 chr12 132331086 132331175 -11455280 + L1MB3 LINE L1 5812 5899 -284 333 264 58 97 chr12 132331454 132331609 -11454846 + HsTC2 DNA Tc2 1 149 -1749 265 360 86 0 chr12 132331698 132331965 -11454490 + HsTC2 DNA Tc2 1403 1692 -206 824 216 22 27 chr12 132331990 132332073 -11454382 - AluJo SINE Alu -92 220 138 1160 115 42 5 chr12 132332073 132332265 -11454190 - L1MA8 LINE L1 -3 6288 6090 824 216 22 27 chr12 132332265 132332366 -11454089 - AluJo SINE Alu -174 138 37 3210 127 13 45 chr12 132332382 132332749 -11453706 - L1MA8 LINE L1 -194 6097 5752 1823 127 55 7 chr12 132332749 132333041 -11453414 - AluSx SINE Alu -6 306 1 3210 127 13 45 chr12 132333041 132333224 -11453231 - L1MA8 LINE L1 -539 5752 5565 311 148 0 19 chr12 132333346 132333400 -11453055 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 705 106 0 0 chr12 132333406 132333510 -11452945 + (TTCC)n Simple_repeat Simple_repeat 2 105 0 1751 129 7 16 chr12 132334649 132334952 -11451503 - AluSq SINE Alu -13 300 1 505 326 0 0 chr12 132335364 132335542 -11450913 + C-rich Low_complexity Low_complexity 1 178 0 344 153 62 57 chr12 132335482 132335658 -11450797 + (CCCCG)n Simple_repeat Simple_repeat 3 179 0 * 379 215 6 57 chr12 132335669 132335846 -11450609 + (CCCG)n Simple_repeat Simple_repeat 1 168 0 933 174 6 0 chr12 132335885 132336063 -11450392 + AluSp SINE Alu 123 301 -12 1603 103 20 32 chr12 132336129 132336402 -11450053 - AluSx SINE Alu 0 302 33 1804 117 15 58 chr12 132336417 132336743 -11449712 - AluSx SINE Alu 0 312 1 1356 243 136 16 chr12 132337279 132337573 -11448882 - L1MC4 LINE L1 -93 7949 7692 1473 197 0 7 chr12 132337573 132337882 -11448573 - AluJo SINE Alu 0 307 1 1356 243 136 16 chr12 132337882 132338195 -11448260 - L1MC4 LINE L1 -350 7692 7267 2119 119 0 10 chr12 132338984 132339287 -11447168 - AluSg SINE Alu -10 300 1 377 293 187 57 chr12 132339414 132339475 -11446980 - L2 LINE L2 -459 2855 2803 1594 170 4 0 chr12 132339475 132339734 -11446721 - AluJb SINE Alu -44 268 9 377 293 187 57 chr12 132339734 132339949 -11446506 - L2 LINE L2 -511 2803 2617 1883 144 0 13 chr12 132339949 132340254 -11446201 + AluSx SINE Alu 1 301 -11 377 293 187 57 chr12 132340254 132340452 -11446003 - L2 LINE L2 -697 2617 2446 849 196 6 28 chr12 132340452 132340631 -11445824 + FAM SINE Alu 1 175 0 377 293 187 57 chr12 132340631 132341061 -11445394 - L2 LINE L2 -868 2446 1831 216 0 0 0 chr12 132341155 132341179 -11445276 + (TA)n Simple_repeat Simple_repeat 2 25 0 1198 174 113 58 chr12 132341184 132341459 -11444996 - AluJo SINE Alu -11 291 2 1007 163 0 0 chr12 132341980 132342140 -11444315 + FRAM SINE Alu 4 163 -13 494 265 26 8 chr12 132342141 132342258 -11444197 + MIR SINE MIR 62 180 -82 1762 162 7 3 chr12 132342349 132342645 -11443810 + AluSx SINE Alu 1 297 -15 2217 103 0 0 chr12 132342646 132342956 -11443499 + AluY SINE Alu 1 310 -1 797 127 49 0 chr12 132342956 132343098 -11443357 - L1MA7 LINE L1 -23 6268 6120 583 168 0 37 chr12 132343098 132343205 -11443250 - AluSg/x SINE Alu -19 291 189 2220 61 0 0 chr12 132343207 132343486 -11442969 + AluYa5 SINE Alu 22 300 -11 263 261 62 0 chr12 132343488 132343553 -11442902 - MIR SINE MIR -192 70 2 1611 151 0 31 chr12 132343909 132344228 -11442227 + AluSg SINE Alu 1 309 -1 276 261 277 0 chr12 132344262 132344392 -11442063 + MIR3 SINE MIR 37 202 -6 565 209 0 67 chr12 132344743 132344877 -11441578 - MIR SINE MIR -40 222 98 771 156 7 22 chr12 132344911 132345046 -11441409 - FLAM_C SINE Alu 0 133 1 465 250 116 51 chr12 132345056 132345584 -11440871 - MLT1H1 LTR MaLR 0 555 1 1488 210 94 3 chr12 132345812 132346174 -11440281 + L1M4 LINE L1 4661 5055 -1091 1629 145 18 0 chr12 132346174 132346450 -11440005 + AluJo SINE Alu 1 281 -31 405 216 0 50 chr12 132346674 132346813 -11439642 - AluSg SINE Alu -177 133 2 28 48 0 0 chr12 132346814 132346856 -11439599 + AT_rich Low_complexity Low_complexity 1 42 0 268 210 42 28 chr12 132346909 132347052 -11439403 + (TA)n Simple_repeat Simple_repeat 2 146 0 30 27 0 0 chr12 132347303 132347340 -11439115 + AT_rich Low_complexity Low_complexity 1 37 0 2131 111 0 3 chr12 132347340 132347638 -11438817 + AluSx SINE Alu 1 297 -15 315 317 143 12 chr12 132347722 132347883 -11438572 - L2 LINE L2 -226 3046 2865 1859 159 0 0 chr12 132348015 132348317 -11438138 - AluJo SINE Alu -10 302 1 1488 210 94 3 chr12 132348317 132348679 -11437776 - L1M4 LINE L1 -1091 5055 4661 465 250 116 51 chr12 132348907 132349435 -11437020 + MLT1H1 LTR MaLR 1 555 0 752 163 7 22 chr12 132349445 132349580 -11436875 + FLAM_C SINE Alu 1 133 0 565 209 0 67 chr12 132349614 132349748 -11436707 + MIR SINE MIR 98 222 -40 276 261 277 0 chr12 132350099 132350229 -11436226 - MIR3 SINE MIR -6 202 37 2067 112 0 16 chr12 132350263 132350577 -11435878 - AluSg SINE Alu -1 309 1 547 236 64 96 chr12 132350934 132351001 -11435454 + MIR SINE MIR 2 70 -192 2242 75 0 20 chr12 132351001 132351307 -11435148 - AluY SINE Alu -11 300 1 1911 117 10 20 chr12 132351311 132351611 -11434844 - AluSq SINE Alu -14 299 3 228 35 0 0 chr12 132351611 132351640 -11434815 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2040 83 0 4 chr12 132351642 132351918 -11434537 - AluSg SINE Alu -35 275 1 547 236 64 96 chr12 132351918 132352061 -11434394 + MIR SINE MIR 73 214 -48 1116 67 20 0 chr12 132352062 132352211 -11434244 + AluY SINE Alu 86 237 -74 1863 127 40 3 chr12 132352453 132352752 -11433703 + AluSx SINE Alu 1 310 -2 631 186 26 0 chr12 132352995 132353108 -11433347 + L1MC1 LINE L1 6218 6333 0 2128 106 0 3 chr12 132353118 132353411 -11433044 + AluSg SINE Alu 1 292 -18 1608 141 11 32 chr12 132353420 132353697 -11432758 - MER57-int LTR ERV1 -5517 2020 1750 22 35 0 0 chr12 132356951 132356980 -11429475 + AT_rich Low_complexity Low_complexity 1 29 0 1256 168 62 111 chr12 132357050 132357132 -11429323 - L1MA7 LINE L1 -83 6208 6124 1788 149 3 14 chr12 132357132 132357427 -11429028 - AluSx SINE Alu -20 292 1 1256 168 62 111 chr12 132357427 132357597 -11428858 - L1MA7 LINE L1 -167 6124 5981 1724 102 91 0 chr12 132357597 132357872 -11428583 - AluSq SINE Alu -13 300 1 1256 168 62 111 chr12 132357872 132358024 -11428431 - L1MA7 LINE L1 -310 5981 5823 682 144 17 8 chr12 132358025 132358143 -11428312 - FLAM_A SINE Alu -1 141 23 467 182 50 0 chr12 132358154 132358252 -11428203 - L1MA7 LINE L1 -360 5806 5703 2012 155 14 113 chr12 132358922 132359078 -11427377 - L1MB8 LINE L1 0 6178 6008 2116 104 7 0 chr12 132359078 132359375 -11427080 + AluSx SINE Alu 1 299 -13 2012 155 14 113 chr12 132359375 132359404 -11427051 - L1MB8 LINE L1 -170 6008 5978 1694 157 31 0 chr12 132359404 132359698 -11426757 + AluSx SINE Alu 1 303 -9 2012 155 14 113 chr12 132359698 132359874 -11426581 - L1MB8 LINE L1 -200 5978 5877 1714 121 50 30 chr12 132359874 132360171 -11426284 + AluSc SINE Alu 1 303 -6 2012 155 14 113 chr12 132360171 132360311 -11426144 - L1MB8 LINE L1 -301 5877 5725 1929 138 10 0 chr12 132360518 132360814 -11425641 + AluSx SINE Alu 1 299 -13 677 175 8 0 chr12 132360826 132360946 -11425509 + FLAM_A SINE Alu 20 140 -2 2110 110 3 0 chr12 132361516 132361817 -11424638 + AluSx SINE Alu 1 302 -10 1171 112 146 0 chr12 132361923 132362129 -11424326 + L1PA13 LINE L1 5928 6163 0 2858 106 50 24 chr12 132362940 132363200 -11423255 + L1MA2 LINE L1 5819 6098 -206 1863 119 34 14 chr12 132363200 132363495 -11422960 + AluSx SINE Alu 3 303 -9 2858 106 50 24 chr12 132363495 132363698 -11422757 + L1MA2 LINE L1 6098 6294 -10 1796 159 3 7 chr12 132364294 132364618 -11421837 - AluJb SINE Alu 0 312 1 916 102 0 0 chr12 132364638 132364766 -11421689 - AluSg/x SINE Alu -21 289 162 2248 69 3 3 chr12 132364923 132365212 -11421243 - AluY SINE Alu -22 289 1 2593 147 16 30 chr12 132365404 132365907 -11420548 - L1MC1 LINE L1 0 6333 5838 2230 75 3 0 chr12 132365927 132366233 -11420222 + AluSg SINE Alu 1 307 0 1848 139 7 29 chr12 132366235 132366545 -11419910 + AluJo SINE Alu 1 303 -9 2037 112 7 10 chr12 132366545 132366840 -11419615 + AluSx SINE Alu 1 294 -18 2288 43 0 4 chr12 132367828 132368134 -11418321 - AluY SINE Alu 0 305 1 2114 37 10 24 chr12 132368363 132368657 -11417798 + AluY SINE Alu 1 290 -21 2077 115 0 10 chr12 132368856 132369160 -11417295 + AluSx SINE Alu 1 301 -11 2056 125 0 3 chr12 132369160 132369455 -11417000 + AluSc SINE Alu 1 294 -15 235 239 64 28 chr12 132369477 132369586 -11416869 + Tigger1 DNA MER2_type 969 1081 -1337 852 283 43 0 chr12 132370146 132370379 -11416076 + MIR SINE MIR 3 245 -17 1772 154 0 22 chr12 132371114 132371425 -11415030 - AluSx SINE Alu -8 304 1 22 70 0 0 chr12 132371703 132371746 -11414709 + AT_rich Low_complexity Low_complexity 1 43 0 2168 102 0 3 chr12 132371747 132372040 -11414415 - AluSg SINE Alu -18 292 1 1558 180 34 10 chr12 132372071 132372366 -11414089 + AluJb SINE Alu 1 302 -10 507 250 42 7 chr12 132372381 132372525 -11413930 - MER21B LTR ERV1 -615 248 100 389 276 0 20 chr12 132372564 132372662 -11413793 - MER21B LTR ERV1 -767 96 1 258 310 86 69 chr12 132372670 132372819 -11413636 - L2 LINE L2 -451 2863 2718 2181 110 7 0 chr12 132372819 132373129 -11413326 - AluSq SINE Alu -1 312 1 2102 123 3 0 chr12 132373129 132373438 -11413017 - AluSx SINE Alu -1 311 2 258 310 86 69 chr12 132373438 132373519 -11412936 - L2 LINE L2 -595 2719 2628 1889 120 0 39 chr12 132373893 132374201 -11412254 - AluSx SINE Alu -3 309 14 2294 92 3 0 chr12 132374205 132374508 -11411947 - AluSx SINE Alu -8 304 1 1481 153 113 7 chr12 132374671 132374946 -11411509 - MER47A DNA MER2_type -1 365 62 1071 157 132 5 chr12 132375241 132375445 -11411010 - AluJo SINE Alu -82 230 1 1442 174 0 30 chr12 132375925 132376190 -11410265 - AluJo SINE Alu -52 260 4 1627 159 0 47 chr12 132376365 132376661 -11409794 - AluJo SINE Alu -30 282 1 1910 143 3 3 chr12 132376734 132377041 -11409414 - AluSx SINE Alu -5 307 1 2162 61 7 4 chr12 132377120 132377397 -11409058 - AluY SINE Alu -16 295 18 690 152 0 9 chr12 132377999 132378111 -11408344 - FLAM_A SINE Alu -9 133 23 808 102 0 0 chr12 132378266 132378374 -11408081 + AluSq/x SINE Alu 1 108 -205 358 90 0 30 chr12 132378375 132378435 -11408020 + FLAM_A SINE Alu 71 117 -16 25 0 0 0 chr12 132378442 132378467 -11407988 + AT_rich Low_complexity Low_complexity 1 25 0 1955 144 7 3 chr12 132378562 132378868 -11407587 - AluSx SINE Alu -5 307 1 2042 125 0 3 chr12 132379219 132379530 -11406925 - AluSg SINE Alu 0 310 1 2174 113 3 0 chr12 132380011 132380322 -11406133 + AluSx SINE Alu 1 312 0 1150 110 0 0 chr12 132380322 132380486 -11405969 + AluSq SINE Alu 134 297 -16 2079 82 0 4 chr12 132380488 132380767 -11405688 + AluY SINE Alu 1 278 -33 235 0 28 28 chr12 132380772 132380808 -11405647 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 351 65 0 0 chr12 132380979 132381025 -11405430 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1038 172 0 60 chr12 132381681 132381913 -11404542 - AluJb SINE Alu -9 303 86 820 171 0 0 chr12 132381989 132382118 -11404337 + AluJo/FLAM SINE Alu 1 129 -173 2230 80 7 7 chr12 132382118 132382417 -11404038 - AluSp SINE Alu -14 299 1 786 143 0 0 chr12 132383988 132384100 -11402355 + AluJo/FLAM SINE Alu 9 120 -192 2055 132 0 0 chr12 132384101 132384404 -11402051 - AluSx SINE Alu -9 303 1 1588 166 17 24 chr12 132384436 132384725 -11401730 + AluJo SINE Alu 1 287 -25 572 154 120 51 chr12 132384738 132384855 -11401600 - FLAM_C SINE Alu -7 126 2 1700 113 0 0 chr12 132385947 132386186 -11400269 + AluSx SINE Alu 53 291 -21 649 194 23 8 chr12 132386193 132386322 -11400133 + FLAM_C SINE Alu 1 131 -2 965 176 31 0 chr12 132386409 132386568 -11399887 - FRAM SINE Alu -1 165 2 2249 99 0 0 chr12 132386573 132386875 -11399580 - AluSq SINE Alu -11 302 1 198 0 0 0 chr12 132386878 132386900 -11399555 + (T)n Simple_repeat Simple_repeat 1 22 0 2034 118 0 38 chr12 132387031 132387200 -11399255 - AluSc SINE Alu -8 301 148 2388 53 13 0 chr12 132387200 132387500 -11398955 - AluY SINE Alu -7 304 1 2034 118 0 38 chr12 132387500 132387643 -11398812 - AluSc SINE Alu -161 148 1 23 0 0 0 chr12 132388095 132388118 -11398337 + AT_rich Low_complexity Low_complexity 1 23 0 1703 163 10 10 chr12 132388166 132388466 -11397989 - AluJb SINE Alu -6 306 7 225 132 0 0 chr12 132388537 132388575 -11397880 + (A)n Simple_repeat Simple_repeat 1 38 0 647 230 0 0 chr12 132388782 132388895 -11397560 + FLAM_C SINE Alu 6 118 -25 2193 94 7 0 chr12 132388941 132389239 -11397216 + AluSx SINE Alu 2 301 -11 2211 207 44 77 chr12 132389427 132389668 -11396787 - L1ME1 LINE L1 -150 6016 5768 466 60 0 210 chr12 132389668 132389729 -11396726 - MADE1 DNA Mariner 0 80 46 1895 116 0 0 chr12 132389729 132389996 -11396459 + AluSx SINE Alu 25 291 -21 466 60 0 210 chr12 132389996 132390034 -11396421 - MADE1 DNA Mariner -34 46 2 2211 207 44 77 chr12 132390034 132390217 -11396238 - L1ME1 LINE L1 -398 5768 5580 1600 177 0 0 chr12 132390217 132390488 -11395967 - AluJo SINE Alu -12 300 30 2211 207 44 77 chr12 132390488 132390749 -11395706 - L1ME1 LINE L1 -586 5580 5353 1996 132 0 0 chr12 132390898 132391186 -11395269 + AluSx SINE Alu 1 288 -24 898 87 0 0 chr12 132391194 132391309 -11395146 + AluSq/x SINE Alu 1 115 -198 7738 30 0 1 chr12 132391317 132392891 -11393564 + L1PA5 LINE L1 4599 6154 0 2234 92 7 0 chr12 132392896 132393200 -11393255 - AluSp SINE Alu -7 306 1 232 264 92 109 chr12 132393455 132393629 -11392826 - MER5B DNA MER1_type -7 171 1 191 298 0 0 chr12 132393976 132394023 -11392432 - L2 LINE L2 -4 3268 3222 341 212 15 0 chr12 132394317 132394383 -11392072 + L2 LINE L2 3204 3270 -2 802 223 36 20 chr12 132394536 132395170 -11391285 - L1MD1 LINE L1 -2 6240 5557 1364 156 67 4 chr12 132397125 132397395 -11389060 - AluJo SINE Alu -16 296 10 925 172 0 0 chr12 132397957 132398114 -11388341 + AluJb SINE Alu 136 292 -20 363 155 0 0 chr12 132398117 132398175 -11388280 + AluSc SINE Alu 129 186 -113 1148 261 100 70 chr12 132398349 132399032 -11387423 + L1ME3 LINE L1 5452 6154 -8 2174 85 0 16 chr12 132401124 132401430 -11385025 + AluSc SINE Alu 9 309 0 2120 112 3 0 chr12 132401739 132402035 -11384420 + AluSq SINE Alu 1 297 -16 1955 78 78 14 chr12 132402037 132402409 -11384046 + AluY SINE Alu 1 390 0 1576 156 57 0 chr12 132402497 132402779 -11383676 + AluJo SINE Alu 4 301 -11 2006 118 0 0 chr12 132403255 132403535 -11382920 - AluSq SINE Alu -33 280 1 2207 106 0 3 chr12 132403731 132404034 -11382421 - AluSq SINE Alu -11 302 1 1216 160 142 41 chr12 132404052 132404320 -11382135 - AluJo SINE Alu -17 295 1 1588 159 50 0 chr12 132404322 132404605 -11381850 - AluJo SINE Alu -15 297 1 231 197 16 0 chr12 132404609 132404670 -11381785 - L1MD1 LINE L1 -952 5194 5133 2329 57 0 7 chr12 132404672 132404973 -11381482 - AluY SINE Alu -12 299 1 877 194 48 0 chr12 132404975 132405161 -11381294 - L1MD1 LINE L1 -1877 4269 4075 795 127 140 119 chr12 132405638 132405670 -11380785 - L1MB7 LINE L1 0 6184 6154 1548 174 7 31 chr12 132405670 132405964 -11380491 + AluJb SINE Alu 1 287 -25 795 127 140 119 chr12 132405964 132406167 -11380288 - L1MB7 LINE L1 -30 6154 5944 231 227 30 15 chr12 132406179 132406245 -11380210 + Charlie4 DNA MER1_type 8 74 -1887 2271 92 0 48 chr12 132406250 132406269 -11380186 - AluY SINE Alu -11 300 282 199 0 0 0 chr12 132406269 132406291 -11380164 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2271 92 0 48 chr12 132406291 132406586 -11379869 - AluY SINE Alu -29 282 1 26 0 0 0 chr12 132406586 132406612 -11379843 + AT_rich Low_complexity Low_complexity 1 26 0 1622 110 9 5 chr12 132406632 132406850 -11379605 - AluSx SINE Alu -93 219 1 252 200 0 0 chr12 132407007 132407062 -11379393 + (TG)n Simple_repeat Simple_repeat 2 56 0 1682 168 7 42 chr12 132407252 132407397 -11379058 + AluJo SINE Alu 1 150 -162 2535 69 0 3 chr12 132407397 132407701 -11378754 + AluY SINE Alu 1 303 -8 1682 168 7 42 chr12 132407701 132407865 -11378590 + AluJo SINE Alu 150 299 -13 1897 142 14 14 chr12 132407867 132408155 -11378300 + AluJo SINE Alu 1 288 -24 185 290 14 14 chr12 132408167 132408236 -11378219 - MIR3 SINE MIR -15 193 125 1000 268 49 53 chr12 132408584 132408999 -11377456 + L1MC4a LINE L1 5504 5918 -1890 2174 123 0 22 chr12 132408999 132409316 -11377139 + AluJo SINE Alu 1 310 -2 1000 268 49 53 chr12 132409316 132409351 -11377104 + L1MC4a LINE L1 5918 5952 -1856 388 204 172 0 chr12 132409692 132409785 -11376670 - Charlie4 DNA MER1_type -2 1959 1851 2289 82 10 0 chr12 132409793 132410086 -11376369 + AluSx SINE Alu 6 301 -11 204 241 17 17 chr12 132410296 132410354 -11376101 + CT-rich Low_complexity Low_complexity 1 58 0 1732 149 37 27 chr12 132410676 132410972 -11375483 - AluJo SINE Alu -13 299 1 1078 77 12 41 chr12 132410972 132411142 -11375313 - L1MA7 LINE L1 -185 6106 5942 888 57 0 0 chr12 132411143 132411249 -11375206 - AluY SINE Alu -13 298 193 1417 162 56 19 chr12 132411249 132411515 -11374940 - L1MA7 LINE L1 -341 5950 5675 2231 132 0 0 chr12 132411525 132411829 -11374626 - AluSx SINE Alu -8 304 1 399 88 18 0 chr12 132412232 132412289 -11374166 + FAM SINE Alu 119 176 -3 2090 94 54 0 chr12 132412289 132412565 -11373890 + AluSg SINE Alu 1 291 -19 2860 80 17 34 chr12 132412641 132412702 -11373753 + L1P5 LINE L1 5381 5442 -709 2073 124 3 0 chr12 132412702 132413021 -11373434 + AluSq SINE Alu 1 320 0 2860 80 17 34 chr12 132413021 132413370 -11373085 + L1P5 LINE L1 5442 5786 -365 2469 87 0 3 chr12 132413371 132413680 -11372775 + AluSq SINE Alu 1 308 -5 1329 115 0 0 chr12 132413742 132413924 -11372531 - AluSg/x SINE Alu -10 302 121 2471 75 0 0 chr12 132414180 132414485 -11371970 + AluY SINE Alu 1 305 -6 1227 157 5 29 chr12 132414649 132414859 -11371596 + AluJo SINE Alu 87 291 -21 2390 92 0 3 chr12 132414861 132415164 -11371291 + AluSx SINE Alu 1 302 -10 1765 172 28 10 chr12 132415270 132415560 -11370895 + AluJb SINE Alu 1 295 -17 2205 103 7 0 chr12 132416852 132417142 -11369313 + AluY SINE Alu 1 292 -19 2269 94 17 7 chr12 132417156 132417455 -11369000 + AluSp SINE Alu 1 302 -11 928 266 105 9 chr12 132417484 132418050 -11368405 - L2 LINE L2 -17 3296 2661 2431 55 3 3 chr12 132418051 132418340 -11368115 + AluY SINE Alu 1 289 -22 187 139 47 0 chr12 132418340 132418383 -11368072 - L2 LINE L2 -890 2424 2380 926 217 0 0 chr12 132419203 132419369 -11367086 + FAM SINE Alu 1 166 -9 317 335 209 33 chr12 132419775 132420449 -11366006 + L2 LINE L2 1691 2483 -831 610 260 81 102 chr12 132420707 132421088 -11365367 + L2 LINE L2 2896 3268 -4 258 95 0 0 chr12 132421378 132421420 -11365035 + (TC)n Simple_repeat Simple_repeat 1 42 0 763 80 0 0 chr12 132421830 132421930 -11364525 + HY3 scRNA scRNA 1 100 -1 2236 102 3 10 chr12 132421945 132422240 -11364215 + AluSx SINE Alu 1 293 -19 192 77 0 0 chr12 132422883 132422909 -11363546 + (TA)n Simple_repeat Simple_repeat 2 27 0 283 289 0 0 chr12 132422911 132423001 -11363454 + L1MC4 LINE L1 6614 6703 -1339 348 161 0 0 chr12 132423001 132423063 -11363392 + (TA)n Simple_repeat Simple_repeat 2 63 0 195 42 0 0 chr12 132423223 132423247 -11363208 + (TC)n Simple_repeat Simple_repeat 2 25 0 2346 80 7 0 chr12 132423247 132423536 -11362919 - AluSg SINE Alu -19 291 1 624 247 101 45 chr12 132423788 132424124 -11362331 + L1ME4a LINE L1 5526 5880 -241 1764 135 60 0 chr12 132424887 132425154 -11361301 + AluJb SINE Alu 18 300 -12 1968 158 0 7 chr12 132425789 132426087 -11360368 - AluJo SINE Alu -16 296 1 228 222 56 0 chr12 132426341 132426413 -11360042 - L1M3 LINE L1 -740 5440 5365 1930 161 13 0 chr12 132426445 132426619 -11359836 - AluSg SINE Alu -7 303 122 216 0 0 0 chr12 132426619 132426643 -11359812 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1930 161 13 0 chr12 132426643 132426767 -11359688 - AluSg SINE Alu -188 122 1 1290 170 82 35 chr12 132426770 132426934 -11359521 - AluJb SINE Alu -17 295 111 2052 118 17 0 chr12 132426934 132427231 -11359224 + AluSq SINE Alu 1 302 -11 1290 170 82 35 chr12 132427231 132427348 -11359107 - AluJb SINE Alu -201 111 1 30 69 0 0 chr12 132428266 132428324 -11358131 + GC_rich Low_complexity Low_complexity 1 58 0 2536 33 3 20 chr12 132428533 132428839 -11357616 + AluY SINE Alu 1 301 -10 2299 125 0 3 chr12 132430702 132431013 -11355442 + AluSx SINE Alu 1 310 -2 2174 101 7 0 chr12 132431054 132431370 -11355085 - AluSg SINE Alu 0 318 1 1023 136 10 17 chr12 132431385 132431448 -11355007 - L1MA5 LINE L1 -336 5835 5773 2092 115 0 3 chr12 132431448 132431735 -11354720 - AluSx SINE Alu -18 294 9 1023 136 10 17 chr12 132431735 132431863 -11354592 - L1MA5 LINE L1 -398 5773 5649 1030 152 0 12 chr12 132432100 132432265 -11354190 - AluJo/FRAM SINE Alu -9 303 141 2242 94 21 0 chr12 132432268 132432556 -11353899 - AluSx SINE Alu -18 294 1 1890 129 11 0 chr12 132433029 132433336 -11353119 + AluSx SINE Alu 1 310 0 484 286 48 11 chr12 132433680 132433869 -11352586 - L2 LINE L2 -221 3051 2856 1731 152 7 18 chr12 132434109 132434392 -11352063 + AluJb SINE Alu 3 282 -30 1949 110 0 4 chr12 132434501 132434756 -11351699 + AluSx SINE Alu 1 254 -58 235 261 23 0 chr12 132434873 132434961 -11351494 - L1MC4 LINE L1 -1339 6703 6614 195 42 0 0 chr12 132435125 132435149 -11351306 + (TC)n Simple_repeat Simple_repeat 2 25 0 1985 126 34 7 chr12 132435357 132435651 -11350804 - AluSx SINE Alu -10 302 1 1723 158 28 0 chr12 132435899 132436220 -11350235 + AluSx SINE Alu 1 312 0 621 119 0 0 chr12 132436227 132436311 -11350144 + FLAM_A SINE Alu 31 114 -28 782 183 23 0 chr12 132436486 132436617 -11349838 - AluJo SINE Alu -177 135 2 1004 259 172 0 chr12 132436620 132436963 -11349492 - L1MC4 LINE L1 -2045 5763 5362 545 202 118 0 chr12 132436963 132437082 -11349373 + FLAM_C SINE Alu 1 133 0 1707 137 8 80 chr12 132437682 132438054 -11348401 - MER4A LTR ERV1 0 664 261 499 148 91 0 chr12 132438055 132438143 -11348312 - MER4A LTR ERV1 -568 96 1 398 256 128 0 chr12 132438850 132439030 -11347425 - AluJb SINE Alu -65 237 35 1992 151 0 3 chr12 132439294 132439593 -11346862 + AluSx SINE Alu 1 298 -14 2206 93 0 30 chr12 132440379 132440681 -11345774 - AluSp SINE Alu -18 295 3 387 115 0 0 chr12 132441106 132441167 -11345288 - Alu SINE Alu -2 300 240 669 187 0 0 chr12 132441170 132441277 -11345178 - AluSp SINE Alu -205 108 2 838 154 70 0 chr12 132441410 132441553 -11344902 + L1PA8 LINE L1 6017 6169 -3 643 140 0 0 chr12 132442286 132442379 -11344076 + FRAM SINE Alu 67 159 -17 2357 88 3 0 chr12 132442533 132442827 -11343628 - AluSx SINE Alu -17 295 1 429 20 0 0 chr12 132443065 132443115 -11343340 + (CA)n Simple_repeat Simple_repeat 1 50 0 422 290 55 7 chr12 132443347 132443492 -11342963 - MIR SINE MIR -18 244 93 22 0 0 0 chr12 132443714 132443736 -11342719 + AT_rich Low_complexity Low_complexity 1 22 0 1822 155 3 3 chr12 132443803 132444093 -11342362 + AluSx SINE Alu 3 292 -20 24 0 0 0 chr12 132444205 132444229 -11342226 + AT_rich Low_complexity Low_complexity 1 24 0 2069 135 0 10 chr12 132444229 132444525 -11341930 - AluSx SINE Alu -19 293 1 677 172 82 0 chr12 132444647 132444769 -11341686 + FRAM SINE Alu 26 157 -19 626 168 44 0 chr12 132444769 132444882 -11341573 + L1M3 LINE L1 5496 5613 -570 2042 131 7 3 chr12 132444883 132445174 -11341281 + AluSx SINE Alu 1 292 -20 2123 121 3 3 chr12 132445176 132445473 -11340982 + AluSg SINE Alu 1 297 -13 1323 156 16 74 chr12 132445476 132445697 -11340758 + L1MB3 LINE L1 4980 5212 -934 1932 166 13 0 chr12 132445697 132446005 -11340450 + AluSx SINE Alu 1 312 0 2514 112 31 14 chr12 132446015 132446373 -11340082 + THE1B LTR MaLR 1 364 0 1323 156 16 74 chr12 132446373 132446505 -11339950 + L1MB3 LINE L1 5221 5323 -823 2307 122 0 0 chr12 132446506 132446817 -11339638 + AluY SINE Alu 1 311 0 1252 150 0 0 chr12 132446818 132447011 -11339444 + AluSg/x SINE Alu 120 312 0 2391 161 73 35 chr12 132447022 132447198 -11339257 + L1MB3 LINE L1 5317 5485 -698 2215 91 7 3 chr12 132447198 132447512 -11338943 + AluY SINE Alu 1 315 0 2391 161 73 35 chr12 132447512 132447824 -11338631 + L1MB3 LINE L1 5485 5827 -356 916 112 0 15 chr12 132447825 132447959 -11338496 + FLAM_C SINE Alu 1 132 -1 1925 160 0 0 chr12 132447980 132448268 -11338187 + AluSx SINE Alu 1 288 -24 483 227 10 0 chr12 132448388 132448485 -11337970 - Tigger7 DNA MER2_type 0 2487 2390 1266 189 64 4 chr12 132448495 132448728 -11337727 - Tigger7 DNA MER2_type -483 250 4 2492 56 0 0 chr12 132448857 132449171 -11337284 - AluSp SINE Alu 0 314 1 1526 164 14 27 chr12 132449171 132449462 -11336993 - AluJo SINE Alu -14 298 11 234 306 218 12 chr12 132450158 132450328 -11336127 + L2 LINE L2 2617 2821 -493 248 158 0 0 chr12 132450455 132450493 -11335962 + MER3 DNA MER1_type 9 46 -163 2814 3 0 0 chr12 132450568 132450863 -11335592 - AluYa5 SINE Alu -16 295 1 1905 135 3 10 chr12 132452375 132452671 -11333784 + AluSc SINE Alu 1 294 -15 452 167 0 0 chr12 132452728 132452806 -11333649 - L1MB8 LINE L1 0 6178 6101 2385 83 3 3 chr12 132452826 132453126 -11333329 - AluSp SINE Alu -13 300 1 1992 159 0 0 chr12 132453126 132453416 -11333039 - AluSx SINE Alu -16 296 7 1201 197 62 0 chr12 132453425 132453684 -11332771 - L1MB4 LINE L1 0 6180 5906 259 191 0 0 chr12 132453684 132453731 -11332724 + Charlie1 DNA MER1_type 2715 2761 0 1740 182 3 3 chr12 132453762 132454048 -11332407 + AluJb SINE Alu 1 286 -26 950 109 62 57 chr12 132454066 132454259 -11332196 + L1PA16 LINE L1 5973 6166 0 1994 114 61 0 chr12 132454657 132454937 -11331518 + AluY SINE Alu 1 297 -14 2270 108 0 0 chr12 132455173 132455468 -11330987 + AluSx SINE Alu 1 295 -17 2000 149 3 7 chr12 132455470 132455771 -11330684 + AluJb SINE Alu 1 300 -12 1749 162 20 34 chr12 132456673 132456969 -11329486 - AluJb SINE Alu -18 294 3 1209 195 99 20 chr12 132457474 132457680 -11328775 + L1ME3A LINE L1 5824 6064 -106 2225 96 3 0 chr12 132457680 132458012 -11328443 - AluSx SINE Alu 0 333 1 1209 195 99 20 chr12 132458012 132458106 -11328349 + L1ME3A LINE L1 6064 6149 -21 575 138 0 0 chr12 132458200 132458294 -11328161 - L1PB4 LINE L1 -1 6155 6062 261 0 0 0 chr12 132458423 132458452 -11328003 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1454 140 21 12 chr12 132458454 132458697 -11327758 - AluSx SINE Alu -23 289 45 403 147 15 0 chr12 132458864 132458932 -11327523 - AluS SINE Alu -232 69 1 988 147 20 0 chr12 132458956 132459106 -11327349 + FRAM SINE Alu 9 161 -15 294 257 207 7 chr12 132460245 132460385 -11326070 - L1ME2 LINE L1 -9 6155 5988 855 228 0 0 chr12 132460875 132461033 -11325422 - FRAM SINE Alu -5 161 4 35 78 0 0 chr12 132461122 132461199 -11325256 + AT_rich Low_complexity Low_complexity 1 77 0 1602 172 24 20 chr12 132461283 132461579 -11324876 - AluJo SINE Alu -13 299 3 2421 85 0 3 chr12 132461588 132461895 -11324560 - AluY SINE Alu -5 306 1 400 209 81 90 chr12 132461901 132462112 -11324343 - L1MC4 LINE L1 0 8042 7834 26 64 0 0 chr12 132462280 132462327 -11324128 + AT_rich Low_complexity Low_complexity 1 47 0 3806 142 114 24 chr12 132463653 132465032 -11321423 + pTR5 LTR ERV1 743 2606 0 2322 94 3 7 chr12 132465066 132465374 -11321081 - AluSc SINE Alu -2 307 1 1832 134 7 11 chr12 132465436 132465705 -11320750 - AluJb SINE Alu -32 280 13 318 306 37 37 chr12 132466386 132466557 -11319898 - MER5A DNA MER1_type -1 188 7 2182 112 23 10 chr12 132466680 132466984 -11319471 - AluSx SINE Alu -1 311 4 2039 162 0 0 chr12 132468879 132469187 -11317268 - AluJb SINE Alu -2 310 3 313 256 0 44 chr12 132469189 132469279 -11317176 - L1ME2 LINE L1 -294 5827 5742 1048 186 11 0 chr12 132469282 132469459 -11316996 - AluJb SINE Alu -14 298 120 32 0 0 0 chr12 132469459 132469491 -11316964 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr12 132469531 132469566 -11316889 + AT_rich Low_complexity Low_complexity 1 35 0 702 137 8 8 chr12 132469596 132469713 -11316742 - FLAM_A SINE Alu -5 137 21 1915 146 35 0 chr12 132469832 132470119 -11316336 - AluSq SINE Alu -16 297 1 1198 171 22 31 chr12 132470284 132470506 -11315949 + AluJo SINE Alu 82 301 -11 2168 142 3 0 chr12 132470558 132470867 -11315588 - AluSx SINE Alu -2 310 1 2080 124 0 0 chr12 132471137 132471420 -11315035 - AluSx SINE Alu -15 297 15 2640 51 0 10 chr12 132471539 132471853 -11314602 - AluY SINE Alu 0 311 1 34 89 0 0 chr12 132472575 132472665 -11313790 + AT_rich Low_complexity Low_complexity 1 90 0 2502 71 0 0 chr12 132474003 132474297 -11312158 - AluSc SINE Alu -15 294 1 282 245 226 59 chr12 132474344 132474548 -11311907 + L1MC4a LINE L1 5679 5916 -1892 243 0 0 0 chr12 132474792 132474819 -11311636 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 226 78 20 59 chr12 132475404 132475455 -11311000 + L1MCa LINE L1 2015 2063 -4363 253 261 14 0 chr12 132475456 132475525 -11310930 + (TA)n Simple_repeat Simple_repeat 1 70 0 2263 106 3 0 chr12 132475801 132476102 -11310353 - AluSg SINE Alu -8 302 1 1643 156 6 67 chr12 132476104 132476418 -11310037 - AluJo SINE Alu -14 298 4 2076 119 34 0 chr12 132476479 132476772 -11309683 - AluSx SINE Alu -9 303 1 2542 232 53 42 chr12 132476896 132477323 -11309132 - L1MC4 LINE L1 0 8042 7600 2032 142 0 0 chr12 132477323 132477618 -11308837 - AluSx SINE Alu -17 295 1 2542 232 53 42 chr12 132477618 132477982 -11308473 - L1MC4 LINE L1 -442 7600 7242 688 241 42 0 chr12 132478012 132478178 -11308277 - L1MC4 LINE L1 -472 7570 7398 1272 159 7 74 chr12 132478367 132478637 -11307818 - AluJb SINE Alu -14 298 47 1471 176 0 4 chr12 132478760 132479004 -11307451 + AluJb SINE Alu 68 310 -2 385 322 26 0 chr12 132479012 132479127 -11307328 + L2 LINE L2 3196 3313 0 324 269 157 8 chr12 132479743 132479877 -11306578 + MER117 DNA MER1_type 8 161 -36 468 162 181 118 chr12 132481442 132481586 -11304869 - Charlie1 DNA MER1_type -967 1794 1632 1076 203 88 45 chr12 132481586 132481916 -11304539 + MER2 DNA MER2_type 1 344 0 468 162 181 118 chr12 132481916 132481975 -11304480 - Charlie1 DNA MER1_type -1129 1632 1578 2611 65 0 0 chr12 132481977 132482283 -11304172 - AluSx SINE Alu -6 306 1 2305 94 7 10 chr12 132482322 132482631 -11303824 - AluSg SINE Alu 0 310 3 228 35 0 0 chr12 132482631 132482660 -11303795 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2163 83 0 4 chr12 132482662 132482938 -11303517 - AluSg SINE Alu -35 275 1 310 228 69 10 chr12 132482940 132483041 -11303414 + MIR SINE MIR 64 170 -92 1022 107 20 7 chr12 132483085 132483235 -11303220 + AluY SINE Alu 86 237 -74 1967 130 40 3 chr12 132483477 132483776 -11302679 + AluSx SINE Alu 1 310 -2 633 186 26 0 chr12 132484019 132484132 -11302323 + L1MC1 LINE L1 6218 6333 0 2316 96 0 3 chr12 132484142 132484435 -11302020 + AluSg SINE Alu 1 292 -18 1606 141 11 32 chr12 132484444 132484721 -11301734 - MER57-int LTR ERV1 -5517 2020 1750 1907 147 0 16 chr12 132487851 132488165 -11298290 + AluSx SINE Alu 1 309 -3 2262 118 0 0 chr12 132488710 132489015 -11297440 - AluSx SINE Alu -7 305 1 602 303 109 6 chr12 132489030 132489370 -11297085 - L2 LINE L2 -18 3295 2921 1418 193 58 69 chr12 132489404 132489653 -11296802 - MLT1C LTR MaLR -41 426 176 363 44 0 0 chr12 132489653 132489698 -11296757 + (TTTTC)n Simple_repeat Simple_repeat 3 47 0 2017 130 3 0 chr12 132489706 132489990 -11296465 - AluSx SINE Alu -27 285 1 1418 193 58 69 chr12 132489990 132490110 -11296345 - MLT1C LTR MaLR -298 169 52 2137 138 0 3 chr12 132490364 132490676 -11295779 + AluJo SINE Alu 1 311 -1 687 133 14 21 chr12 132490686 132490829 -11295626 + GA-rich Low_complexity Low_complexity 1 142 0 273 29 0 0 chr12 132490879 132490913 -11295542 + (TG)n Simple_repeat Simple_repeat 1 34 0 3062 143 46 90 chr12 132491287 132491947 -11294508 + LTR8 LTR ERV1 1 628 -63 1938 148 37 0 chr12 132491947 132492245 -11294210 - AluSx SINE Alu -3 309 1 3062 143 46 90 chr12 132492245 132492307 -11294148 + LTR8 LTR ERV1 628 691 0 1196 195 211 7 chr12 132492307 132492615 -11293840 + HUERS-P1 LTR ERV1 1 371 -5892 536 184 142 107 chr12 132492629 132492862 -11293593 + HUERS-P1 LTR ERV1 557 797 -5466 * 1111 108 15 87 chr12 132492852 132493047 -11293408 + HUERS-P1 LTR ERV1 1131 1311 -4952 2242 112 0 3 chr12 132493047 132493342 -11293113 + AluSq SINE Alu 3 296 -17 1497 159 4 20 chr12 132493342 132493594 -11292861 + HUERS-P1 LTR ERV1 5481 5728 -1477 23 0 0 0 chr12 132493595 132493618 -11292837 + AT_rich Low_complexity Low_complexity 1 23 0 1425 116 45 5 chr12 132493643 132493842 -11292613 - AluJo SINE Alu -105 207 1 1605 120 47 0 chr12 132493842 132494100 -11292355 + HUERS-P1 LTR ERV1 5407 5676 -655 570 117 0 0 chr12 132494100 132494177 -11292278 + FRAM SINE Alu 77 153 -23 441 192 0 0 chr12 132494193 132494266 -11292189 + HUERS-P1 LTR ERV1 4870 4942 -3178 463 177 10 21 chr12 132494292 132494388 -11292067 + HUERS-P1 LTR ERV1 4405 4499 -437 1134 152 43 56 chr12 132494479 132494710 -11291745 + HUERS-P1 LTR ERV1 5979 6206 -125 269 218 36 0 chr12 132494710 132494765 -11291690 + MER66A LTR ERV1 284 340 -138 219 69 0 0 chr12 132494765 132494794 -11291661 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 885 160 0 0 chr12 132494943 132495074 -11291381 - FLAM_C SINE Alu 0 133 3 1230 254 10 3 chr12 132495085 132495384 -11291071 + HUERS-P1 LTR ERV1 5945 6245 -18 2203 104 3 0 chr12 132495386 132495674 -11290781 + AluSc SINE Alu 3 291 -18 3544 136 25 97 chr12 132495710 132496277 -11290178 + LTR8 LTR ERV1 1 607 -84 2210 125 3 0 chr12 132496277 132496580 -11289875 + AluSx SINE Alu 1 304 -8 1867 158 21 0 chr12 132496587 132496866 -11289589 + AluJb SINE Alu 1 285 -27 3544 136 25 97 chr12 132496866 132497034 -11289421 + LTR8 LTR ERV1 613 691 0 2280 77 40 0 chr12 132497406 132497703 -11288752 - AluY SINE Alu -1 310 2 248 243 0 57 chr12 132498098 132498130 -11288325 - AluJ/FLAM SINE Alu -236 66 34 2102 128 17 0 chr12 132498130 132498426 -11288029 - AluSx SINE Alu -11 301 1 248 243 0 57 chr12 132498426 132498463 -11287992 - AluJ/FLAM SINE Alu -268 34 1 1575 164 0 51 chr12 132498961 132499036 -11287419 + AluJb SINE Alu 11 88 -224 1741 204 0 0 chr12 132499036 132499335 -11287120 - AluJo SINE Alu -13 299 1 1575 164 0 51 chr12 132499335 132499551 -11286904 + AluJb SINE Alu 88 287 -25 198 0 0 0 chr12 132499554 132499576 -11286879 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2181 92 0 7 chr12 132499743 132500049 -11286406 - AluSc SINE Alu 0 304 1 2141 120 0 19 chr12 132500540 132500857 -11285598 + AluSq SINE Alu 1 311 -2 26 30 0 0 chr12 132500985 132501018 -11285437 + AT_rich Low_complexity Low_complexity 1 33 0 923 117 0 8 chr12 132501056 132501184 -11285271 - FLAM_C SINE Alu -5 128 2 776 240 42 32 chr12 132501214 132501431 -11285024 - MIR SINE MIR -26 236 18 2079 100 7 14 chr12 132501779 132502060 -11284395 + AluSq SINE Alu 1 279 -34 219 69 0 0 chr12 132502061 132502090 -11284365 + (GA)n Simple_repeat Simple_repeat 2 30 0 281 290 125 7 chr12 132502096 132502294 -11284161 + L1ME3 LINE L1 5711 5929 -233 1517 144 0 4 chr12 132502482 132502740 -11283715 - AluJb SINE Alu 0 312 58 598 174 55 9 chr12 132502811 132502920 -11283535 + L1MD2 LINE L1 5742 5855 -504 1272 150 15 0 chr12 132502920 132503120 -11283335 - AluSq SINE Alu -10 303 101 2537 67 0 3 chr12 132503374 132503673 -11282782 - AluSq SINE Alu -13 300 3 977 184 86 21 chr12 132503693 132503926 -11282529 - Charlie1a DNA MER1_type -1207 248 1 2126 106 41 3 chr12 132504795 132505088 -11281367 - AluSq SINE Alu -9 304 1 2315 102 0 0 chr12 132505378 132505673 -11280782 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 132506225 132506246 -11280209 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 132506314 132506335 -11280120 + AT_rich Low_complexity Low_complexity 1 21 0 804 221 0 35 chr12 132506420 132506592 -11279863 + FRAM SINE Alu 1 166 -10 2450 70 3 0 chr12 132507042 132507341 -11279114 - AluY SINE Alu -11 300 1 323 264 25 75 chr12 132507369 132507503 -11278952 - L1MC4a LINE L1 -156 5965 5836 3335 153 58 0 chr12 132507503 132508058 -11278397 - L1MB7 LINE L1 -9 6175 5589 323 264 25 75 chr12 132508058 132508151 -11278304 - L1MC4a LINE L1 -285 5836 5740 922 108 0 50 chr12 132508165 132508304 -11278151 - FLAM_C SINE Alu -1 132 1 662 145 26 8 chr12 132508648 132508765 -11277690 - L1MB7 LINE L1 -16 6168 6050 227 209 0 0 chr12 132508796 132508829 -11277626 - AluSx SINE Alu -14 285 250 1772 108 0 0 chr12 132508829 132509052 -11277403 - AluSx SINE Alu -89 223 1 1481 114 134 53 chr12 132509445 132509727 -11276728 - AluSx SINE Alu 0 304 2 331 158 0 4 chr12 132509751 132509820 -11276635 - Alu SINE Alu -252 49 2 1502 110 5 0 chr12 132509826 132510035 -11276420 - AluY SINE Alu 0 311 102 485 90 0 112 chr12 132510054 132510143 -11276312 - AluSg/x SINE Alu -124 188 110 443 204 19 48 chr12 132510140 132510243 -11276212 - AluJo SINE Alu -128 184 85 * 2198 127 0 0 chr12 132510493 132510793 -11275662 + AluSx SINE Alu 1 300 -12 1728 130 88 0 chr12 132511956 132512241 -11274214 - AluSx SINE Alu -2 310 1 217 247 0 124 chr12 132512677 132512774 -11273681 + L2 LINE L2 3165 3249 -64 455 147 40 13 chr12 132513273 132513348 -11273107 + AluS SINE Alu 1 77 -236 2050 122 3 0 chr12 132513474 132513760 -11272695 + AluSp SINE Alu 10 296 -17 572 219 45 26 chr12 132514309 132514464 -11271991 - L1MA10 LINE L1 -2 6332 6175 624 165 35 9 chr12 132514468 132514583 -11271872 + MER65C LTR ERV1 1 118 -343 2468 79 0 3 chr12 132514583 132514887 -11271568 + AluSq SINE Alu 1 303 -10 1052 127 12 6 chr12 132514887 132515053 -11271402 + MER65C LTR ERV1 293 459 -2 1643 202 3 0 chr12 132515060 132515366 -11271089 - AluJb SINE Alu 0 307 1 259 250 0 18 chr12 132515631 132515687 -11270768 + MIR SINE MIR 21 75 -133 22 35 0 0 chr12 132515854 132515883 -11270572 + AT_rich Low_complexity Low_complexity 1 29 0 2301 89 7 0 chr12 132515921 132516212 -11270243 + AluSx SINE Alu 1 293 -19 1098 126 6 18 chr12 132516215 132516417 -11270038 + AluSq SINE Alu 133 313 0 404 191 17 52 chr12 132516430 132516545 -11269910 - L1ME4a LINE L1 -65 6056 5946 311 291 10 10 chr12 132517426 132517529 -11268926 - LTR33A LTR ERVL -16 507 405 472 321 36 61 chr12 132518074 132518173 -11268282 + MIR SINE MIR 23 116 -146 1577 194 0 7 chr12 132518173 132518457 -11267998 - AluJo SINE Alu -30 282 1 472 321 36 61 chr12 132518457 132518553 -11267902 + MIR SINE MIR 116 213 -49 1848 136 0 7 chr12 132518553 132518825 -11267630 + AluSg SINE Alu 1 270 -40 724 175 0 98 chr12 132519042 132519185 -11267270 - FLAM_A SINE Alu -1 132 4 1948 128 11 3 chr12 132519196 132519502 -11266953 - AluSx SINE Alu 0 308 1 989 271 13 10 chr12 132519804 132520139 -11266316 - AluYa5 SINE Alu 0 340 5 21 67 0 0 chr12 132520269 132520299 -11266156 + AT_rich Low_complexity Low_complexity 1 30 0 1784 175 26 3 chr12 132570726 132571029 -11215426 + AluJo SINE Alu 1 310 -2 2286 104 13 0 chr12 132571148 132571455 -11215000 + AluSq SINE Alu 1 311 -2 1413 134 10 5 chr12 132572582 132572783 -11213672 + AluSx SINE Alu 1 202 -110 482 136 18 246 chr12 132572883 132573111 -11213344 - L1MB8 LINE L1 -24 6154 5979 271 128 2 72 chr12 132573111 132573173 -11213282 + AluJb SINE Alu 72 122 -180 2008 164 84 57 chr12 132573173 132573431 -11213024 - L1MB8 LINE L1 -231 5947 5698 2218 121 0 0 chr12 132573431 132573728 -11212727 - AluSq SINE Alu -16 297 1 2008 164 84 57 chr12 132573728 132573981 -11212474 - L1MB8 LINE L1 -480 5698 5422 526 118 89 67 chr12 132574107 132574142 -11212313 - L1MA8 LINE L1 -87 6204 6171 2522 84 0 0 chr12 132574142 132574440 -11212015 - AluSq SINE Alu -15 298 1 526 118 89 67 chr12 132574440 132574539 -11211916 - L1MA8 LINE L1 -120 6171 6067 21 36 0 0 chr12 132574618 132574646 -11211809 + AT_rich Low_complexity Low_complexity 1 28 0 782 109 73 0 chr12 132574650 132574760 -11211695 - AluJb SINE Alu -194 118 1 21 0 0 0 chr12 132574816 132574837 -11211618 + AT_rich Low_complexity Low_complexity 1 21 0 1761 123 52 11 chr12 132574913 132575181 -11211274 - AluSx SINE Alu -14 298 20 2260 83 0 11 chr12 132575200 132575477 -11210978 + AluSq SINE Alu 1 274 -39 1335 157 206 0 chr12 132575774 132575905 -11210550 - AluJo SINE Alu -13 299 196 2068 125 10 0 chr12 132575905 132576202 -11210253 - AluSq SINE Alu -13 300 1 1335 157 206 0 chr12 132576202 132576318 -11210137 - AluJo SINE Alu -116 196 1 469 176 14 0 chr12 132576342 132576416 -11210039 + tRNA-Asp-GAC tRNA tRNA 1 75 0 2261 84 3 13 chr12 132576436 132576734 -11209721 - AluY SINE Alu -16 295 1 27 49 0 0 chr12 132576737 132576778 -11209677 + AT_rich Low_complexity Low_complexity 1 41 0 1558 148 53 3 chr12 132577327 132577610 -11208845 - AluJo SINE Alu -15 297 1 224 188 0 47 chr12 132578199 132578263 -11208192 + G-rich Low_complexity Low_complexity 3 63 0 22 0 0 0 chr12 132578778 132578800 -11207655 + AT_rich Low_complexity Low_complexity 1 22 0 209 319 190 31 chr12 132579025 132579188 -11207267 + MIR3 SINE MIR 14 202 -6 36 87 0 0 chr12 132580567 132580659 -11205796 + GC_rich Low_complexity Low_complexity 1 92 0 27 29 0 0 chr12 132580696 132580730 -11205725 + GC_rich Low_complexity Low_complexity 1 34 0 226 227 0 34 chr12 132580770 132580858 -11205597 + (CGG)n Simple_repeat Simple_repeat 2 86 0 582 261 71 58 chr12 132582094 132582320 -11204135 - MIR SINE MIR -1 261 33 204 67 0 0 chr12 132582387 132582417 -11204038 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 1642 173 7 0 chr12 132582417 132582695 -11203760 - AluSx SINE Alu -30 282 3 287 122 0 0 chr12 132582891 132582932 -11203523 - Alu SINE Alu -256 46 6 2259 108 3 0 chr12 132582991 132583286 -11203169 - AluSx SINE Alu -16 296 1 24 0 0 0 chr12 132583297 132583321 -11203134 + AT_rich Low_complexity Low_complexity 1 24 0 1230 78 0 0 chr12 132583329 132583482 -11202973 + AluSg/x SINE Alu 160 312 0 1166 236 110 0 chr12 132583514 132583768 -11202687 - AluJo SINE Alu -23 289 8 2074 88 3 54 chr12 132583781 132584096 -11202359 - AluSg SINE Alu 0 300 1 269 81 0 0 chr12 132584605 132584642 -11201813 - Charlie4 DNA MER1_type -1826 135 99 1447 178 63 28 chr12 132584695 132584981 -11201474 + AluJo SINE Alu 1 296 -16 256 281 0 0 chr12 132585064 132585121 -11201334 + L3 LINE CR1 1501 1557 -20 1650 151 3 76 chr12 132585121 132585304 -11201151 - AluJo SINE Alu -18 294 142 2549 71 0 0 chr12 132585304 132585613 -11200842 - AluY SINE Alu -2 309 1 1650 151 3 76 chr12 132585613 132585746 -11200709 - AluJo SINE Alu -170 142 1 2267 61 0 0 chr12 132585842 132586104 -11200351 - AluY SINE Alu -49 262 1 1750 95 4 4 chr12 132586393 132586636 -11199819 + AluY SINE Alu 31 273 -38 294 267 14 20 chr12 132586715 132586861 -11199594 + L1MC5 LINE L1 7592 7736 -225 1786 182 0 22 chr12 132586997 132587315 -11199140 + AluSx SINE Alu 1 311 -1 2431 100 0 3 chr12 132587356 132587667 -11198788 + AluSg SINE Alu 1 310 0 1786 159 3 11 chr12 132587681 132587964 -11198491 + AluJb SINE Alu 24 304 -8 947 186 76 12 chr12 132588388 132588560 -11197895 - AluJo SINE Alu -129 183 1 2277 80 0 27 chr12 132588638 132588939 -11197516 + AluY SINE Alu 1 293 -18 2122 128 3 3 chr12 132589032 132589322 -11197133 + AluSq SINE Alu 1 290 -23 1953 142 14 0 chr12 132589425 132589720 -11196735 - AluSx SINE Alu -13 299 1 452 217 76 0 chr12 132589785 132589877 -11196578 - L2 LINE L2 -7 3306 3208 2299 94 3 7 chr12 132590080 132590378 -11196077 + AluSg SINE Alu 1 297 -13 231 152 38 0 chr12 132590407 132590486 -11195969 + (TA)n Simple_repeat Simple_repeat 1 82 0 506 200 192 0 chr12 132590486 132590606 -11195849 - FRAM SINE Alu -23 153 11 192 239 0 99 chr12 132590796 132590867 -11195588 + L3 LINE CR1 1514 1577 0 2186 110 0 0 chr12 132590986 132591291 -11195164 + AluSx SINE Alu 1 305 0 733 105 0 0 chr12 132591292 132591387 -11195068 + AluS SINE Alu 2 96 -216 2214 113 3 10 chr12 132591387 132591680 -11194775 + AluSg SINE Alu 1 291 -19 1655 119 18 113 chr12 132591687 132591806 -11194649 + AluSp SINE Alu 1 130 -183 264 30 0 0 chr12 132591806 132591839 -11194616 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1655 119 18 113 chr12 132591839 132592047 -11194408 + AluSp SINE Alu 130 297 -16 973 185 69 22 chr12 132592055 132592287 -11194168 + L1MB7 LINE L1 5675 5917 -267 997 120 0 0 chr12 132592289 132592422 -11194033 + AluSq/x SINE Alu 1 133 -180 316 200 24 47 chr12 132592552 132592637 -11193818 - L1MB8 LINE L1 -116 6062 5980 1873 86 4 0 chr12 132592640 132592873 -11193582 + AluSg/x SINE Alu 67 300 -12 243 125 0 0 chr12 132592873 132592913 -11193542 + (TG)n Simple_repeat Simple_repeat 2 41 0 323 304 52 17 chr12 132593021 132593136 -11193319 - L2 LINE L2 -8 3305 3187 2319 110 0 7 chr12 132593160 132593470 -11192985 + AluY SINE Alu 1 308 -3 2301 101 0 0 chr12 132593500 132593796 -11192659 + AluSx SINE Alu 1 296 -16 2359 123 0 0 chr12 132593906 132594214 -11192241 + AluSx SINE Alu 1 308 -4 2099 117 37 3 chr12 132594221 132594519 -11191936 + AluSx SINE Alu 1 308 -4 815 110 85 0 chr12 132594564 132594682 -11191773 + AluJo/FLAM SINE Alu 1 128 -174 2529 84 0 0 chr12 132594684 132594994 -11191461 + AluY SINE Alu 1 310 -1 1738 150 37 0 chr12 132595111 132595407 -11191048 - AluSx SINE Alu 0 306 1 1305 87 0 0 chr12 132595441 132595613 -11190842 - AluSq SINE Alu -4 309 138 2214 64 3 92 chr12 132595714 132596040 -11190415 + AluSg SINE Alu 1 297 -13 251 183 6 0 chr12 132596801 132596857 -11189598 + AluSp SINE Alu 118 170 -133 1893 89 111 0 chr12 132596881 132597152 -11189303 + AluSq SINE Alu 1 301 -12 1649 185 63 0 chr12 132597298 132597584 -11188871 - AluJo SINE Alu -8 304 1 625 107 12 0 chr12 132597816 132597900 -11188555 - AluS SINE Alu -214 99 15 1836 184 0 0 chr12 132597917 132598205 -11188250 - AluJo SINE Alu -19 293 6 685 195 200 5 chr12 132598208 132598413 -11188042 + MLT1C LTR MaLR 152 396 -71 247 125 0 0 chr12 132598417 132598457 -11187998 + Alu SINE Alu 1 40 -261 657 121 0 0 chr12 132598458 132598549 -11187906 + AluSg/x SINE Alu 207 297 -13 273 137 9 92 chr12 132598552 132598636 -11187819 + MLT1B LTR MaLR 308 464 -3 1687 171 7 20 chr12 132598913 132599211 -11187244 - AluJb SINE Alu -18 294 1 2264 115 0 3 chr12 132599274 132599578 -11186877 - AluSx SINE Alu -9 303 1 589 183 7 73 chr12 132599713 132599850 -11186605 - FLAM_A SINE Alu -5 128 1 1653 173 47 23 chr12 132599854 132600154 -11186301 - AluJo SINE Alu -5 307 1 1900 125 4 0 chr12 132600166 132600438 -11186017 - AluSx SINE Alu 0 312 40 291 155 37 18 chr12 132600583 132600830 -11185625 + AluJ SINE Alu 1 293 -9 929 163 41 0 chr12 132600933 132601080 -11185375 + AluJo SINE Alu 142 294 -18 2600 60 0 0 chr12 132601114 132601415 -11185040 - AluY SINE Alu -10 301 1 962 257 53 45 chr12 132601500 132601858 -11184597 + L2 LINE L2 2949 3309 -4 1990 146 3 35 chr12 132602074 132602390 -11184065 + AluJo SINE Alu 1 306 -6 2008 145 6 19 chr12 132602696 132603007 -11183448 + AluSx SINE Alu 5 311 -1 349 240 72 16 chr12 132603302 132603427 -11183028 - L1MC4 LINE L1 -6 8036 7905 1682 161 24 27 chr12 132603447 132603745 -11182710 - AluJb SINE Alu -15 297 1 1808 137 72 4 chr12 132603762 132604040 -11182415 - AluJo SINE Alu -15 297 1 1713 261 57 106 chr12 132604064 132604454 -11182001 + L2 LINE L2 1827 2235 -1079 2328 82 7 20 chr12 132604454 132604759 -11181696 - AluSp SINE Alu -12 301 1 1713 261 57 106 chr12 132604759 132604791 -11181664 + L2 LINE L2 2235 2267 -1047 270 105 0 0 chr12 132604791 132604829 -11181626 - LTR23 LTR ERV1 -79 358 321 1713 261 57 106 chr12 132604829 132605018 -11181437 + L2 LINE L2 2267 2464 -850 1451 64 0 0 chr12 132605018 132605189 -11181266 - AluY SINE Alu -14 297 127 1713 261 57 106 chr12 132605189 132605478 -11180977 + L2 LINE L2 2464 2720 -594 1472 106 67 0 chr12 132605478 132605732 -11180723 + AluSg SINE Alu 1 271 -39 2241 113 0 0 chr12 132605877 132606179 -11180276 - AluY SINE Alu -9 302 1 300 322 0 68 chr12 132606213 132606331 -11180124 + HAL1b LINE L1 789 898 -450 282 236 57 21 chr12 132606460 132606513 -11179942 + HAL1 LINE L1 2264 2314 -193 1948 169 0 6 chr12 132606513 132606826 -11179629 - AluJb SINE Alu -1 311 1 282 236 57 21 chr12 132606826 132606912 -11179543 + HAL1 LINE L1 2314 2408 -99 1950 154 13 7 chr12 132606950 132607300 -11179155 - AluJo SINE Alu 0 354 3 1682 164 0 48 chr12 132607353 132607494 -11178961 + AluJo SINE Alu 1 147 -165 2005 130 18 0 chr12 132607494 132607812 -11178643 + AluSx SINE Alu 1 323 0 1682 164 0 48 chr12 132607812 132607981 -11178474 + AluJo SINE Alu 147 297 -15 207 0 0 0 chr12 132607997 132608020 -11178435 + (TTG)n Simple_repeat Simple_repeat 2 24 0 688 186 35 0 chr12 132608028 132608141 -11178314 - FLAM_C SINE Alu -15 118 2 1879 110 29 77 chr12 132608144 132608454 -11178001 - AluSx SINE Alu -17 295 1 2355 76 17 0 chr12 132608682 132608971 -11177484 - AluSg SINE Alu -15 295 2 909 250 13 32 chr12 132609619 132609935 -11176520 + AluSq SINE Alu 3 312 -1 842 158 41 23 chr12 132610434 132610605 -11175850 + MER33 DNA MER1_type 3 176 -148 1962 118 0 79 chr12 132610625 132610940 -11175515 - AluSx SINE Alu -20 292 3 1339 193 83 19 chr12 132610944 132611209 -11175246 - AluJo SINE Alu -30 282 1 710 181 19 6 chr12 132611210 132611370 -11175085 + MER33 DNA MER1_type 163 324 0 2093 119 7 0 chr12 132611425 132611719 -11174736 - AluSq SINE Alu -17 296 1 1649 112 58 12 chr12 132611797 132612039 -11174416 - AluSp SINE Alu -60 253 1 725 167 0 0 chr12 132612076 132612190 -11174265 - AluJb SINE Alu -194 118 5 2390 91 3 0 chr12 132612225 132612523 -11173932 + AluSp SINE Alu 1 299 -14 1057 79 14 7 chr12 132613309 132613448 -11173007 + AluSc SINE Alu 157 296 -13 526 167 10 29 chr12 132613448 132613550 -11172905 + L1MB5 LINE L1 6029 6128 -46 829 173 7 0 chr12 132613554 132613693 -11172762 - FLAM_C SINE Alu -1 142 3 2286 113 7 0 chr12 132613708 132614010 -11172445 - AluSx SINE Alu -8 304 1 287 153 34 0 chr12 132614010 132614069 -11172386 + L1MB5 LINE L1 6114 6174 0 1486 191 21 21 chr12 132614181 132614463 -11171992 + AluJo SINE Alu 1 282 -30 387 0 0 0 chr12 132614466 132614509 -11171946 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1997 138 0 3 chr12 132614720 132615044 -11171411 - AluSx SINE Alu 0 323 1 1774 177 10 0 chr12 132615049 132615348 -11171107 - AluJo SINE Alu -8 304 3 225 0 0 0 chr12 132615464 132615489 -11170966 + (A)n Simple_repeat Simple_repeat 1 25 0 378 62 0 161 chr12 132615539 132615592 -11170863 - L1MB8 LINE L1 -16 6162 6125 2302 98 3 0 chr12 132615592 132615888 -11170567 + AluSp SINE Alu 1 297 -16 378 62 0 161 chr12 132615888 132615915 -11170540 - L1MB8 LINE L1 -53 6125 6095 451 123 0 97 chr12 132615927 132615979 -11170476 - L1MB4 LINE L1 0 6180 6143 682 188 8 8 chr12 132615979 132616112 -11170343 - FLAM_C SINE Alu 0 133 1 451 123 0 97 chr12 132616112 132616173 -11170282 - L1MB4 LINE L1 -37 6143 6078 239 31 31 0 chr12 132616343 132616375 -11170080 + Alu SINE Alu 247 279 -23 351 0 0 0 chr12 132616376 132616415 -11170040 + (CA)n Simple_repeat Simple_repeat 1 39 0 317 283 9 9 chr12 132617138 132617244 -11169211 + MLT1L LTR MaLR 348 453 -162 295 161 71 0 chr12 132617311 132617367 -11169088 + AluJ/FLAM SINE Alu 5 64 -238 261 108 0 0 chr12 132617578 132617615 -11168840 - Alu SINE Alu -265 37 1 2247 90 3 27 chr12 132617616 132617916 -11168539 - AluSg SINE Alu -17 293 1 2391 89 0 19 chr12 132618275 132618591 -11167864 + AluY SINE Alu 1 310 -1 1277 91 0 6 chr12 132618591 132618756 -11167699 + AluSg/x SINE Alu 124 287 -23 1708 182 10 0 chr12 132619025 132619316 -11167139 + AluSx SINE Alu 6 299 -13 348 284 58 13 chr12 132619610 132619765 -11166690 + MIR SINE MIR 11 172 -90 2304 104 3 0 chr12 132620342 132620640 -11165815 - AluSp SINE Alu -14 299 1 1982 99 0 0 chr12 132620640 132620891 -11165564 - AluSq SINE Alu -12 301 50 197 213 0 0 chr12 132620896 132620943 -11165512 - MIR3 SINE MIR -9 199 153 24 0 0 0 chr12 132622279 132622303 -11164152 + AT_rich Low_complexity Low_complexity 1 24 0 527 228 100 28 chr12 132623130 132623310 -11163145 + L3 LINE CR1 648 840 -737 2446 87 0 0 chr12 132623382 132623680 -11162775 - AluSg SINE Alu -11 299 2 1636 169 25 54 chr12 132623791 132623940 -11162515 + AluJo SINE Alu 1 153 -159 2058 138 3 3 chr12 132623940 132624236 -11162219 + AluSx SINE Alu 1 296 -16 1636 169 25 54 chr12 132624236 132624400 -11162055 + AluJo SINE Alu 153 305 -7 222 150 0 0 chr12 132624400 132624440 -11162015 + (TA)n Simple_repeat Simple_repeat 1 40 0 186 291 48 86 chr12 132624494 132624704 -11161751 + L3 LINE CR1 1217 1418 -159 185 331 169 16 chr12 132624759 132624883 -11161572 + L3 LINE CR1 1430 1572 -5 402 276 276 13 chr12 132624947 132625258 -11161197 - L2 LINE L2 -15 3298 2906 224 206 172 1 chr12 132625304 132625381 -11161074 - MIR SINE MIR -62 146 59 2121 126 0 0 chr12 132625402 132625695 -11160760 + AluSx SINE Alu 1 293 -19 229 188 72 43 chr12 132625750 132625819 -11160636 - L2 LINE L2 -523 2791 2721 21 0 0 0 chr12 132627274 132627295 -11159160 + AT_rich Low_complexity Low_complexity 1 21 0 918 141 0 0 chr12 132628165 132628300 -11158155 + AluSq/x SINE Alu 1 135 -178 1738 169 3 10 chr12 132628300 132628602 -11157853 + AluJb SINE Alu 1 300 -12 950 205 0 0 chr12 132628964 132629130 -11157325 + AluJo SINE Alu 1 166 -146 2157 132 3 3 chr12 132629780 132630083 -11156372 + AluSq SINE Alu 1 303 -10 203 284 0 45 chr12 132630244 132630332 -11156123 - MER5A DNA MER1_type -9 180 97 * 326 195 142 44 chr12 132630262 132630375 -11156080 + MER5A DNA MER1_type 38 161 -28 1023 121 13 6 chr12 132631339 132631496 -11154959 - AluSp SINE Alu -4 309 152 1241 136 19 39 chr12 132631673 132631879 -11154576 - AluJb SINE Alu -108 204 3 2101 101 13 42 chr12 132632026 132632333 -11154122 - AluSx SINE Alu -14 298 1 2059 118 20 16 chr12 132632487 132632791 -11153664 - AluSg SINE Alu -5 305 1 648 86 0 0 chr12 132632887 132632980 -11153475 - AluSx SINE Alu -3 309 217 1151 133 6 6 chr12 132632980 132633146 -11153309 - AluSx SINE Alu -143 169 4 822 234 97 23 chr12 132633162 132633388 -11153067 - MLT1J1 LTR MaLR -167 279 30 1921 154 0 37 chr12 132633388 132633712 -11152743 + AluJb SINE Alu 1 312 0 822 234 97 23 chr12 132633712 132633742 -11152713 - MLT1J1 LTR MaLR -416 30 4 2337 98 10 0 chr12 132634331 132634636 -11151819 - AluSc SINE Alu 0 309 2 1817 102 125 0 chr12 132635596 132635860 -11150595 - AluSc SINE Alu -2 297 1 1014 103 14 0 chr12 132635953 132636099 -11150356 - AluSg/x SINE Alu -6 306 159 2097 106 11 7 chr12 132636199 132636505 -11149950 - AluSx SINE Alu 0 307 1 333 188 130 0 chr12 132636522 132636591 -11149864 - AluJ/FLAM SINE Alu -222 80 3 2034 132 3 3 chr12 132636614 132636903 -11149552 - AluSq SINE Alu -24 289 1 626 241 0 0 chr12 132636923 132637039 -11149416 - FLAM_A SINE Alu -21 121 6 220 251 4 31 chr12 132637084 132637160 -11149295 - MIR SINE MIR -77 131 56 2067 95 0 0 chr12 132637300 132637564 -11148891 - AluSg1 SINE Alu -45 264 1 2278 107 0 0 chr12 132637694 132637985 -11148470 - AluSx SINE Alu -21 291 1 2618 43 0 3 chr12 132638020 132638322 -11148133 - AluY SINE Alu -10 301 1 29 0 0 0 chr12 132638429 132638458 -11147997 + AT_rich Low_complexity Low_complexity 1 29 0 1143 147 0 28 chr12 132638458 132638635 -11147820 - AluSg/x SINE Alu -24 286 115 2162 111 7 7 chr12 132638757 132639063 -11147392 + AluSq SINE Alu 1 306 -7 1837 166 0 34 chr12 132639072 132639392 -11147063 + AluJo SINE Alu 1 309 -3 864 162 0 0 chr12 132640444 132640580 -11145875 - FLAM_C SINE Alu -2 141 6 1984 96 107 4 chr12 132640600 132640880 -11145575 - AluSx SINE Alu -3 309 1 222 352 0 0 chr12 132641108 132641179 -11145276 - L2 LINE L2 -1396 1918 1848 2132 95 35 0 chr12 132641253 132641536 -11144919 + AluSp SINE Alu 1 293 -20 2902 3 3 0 chr12 132641538 132641848 -11144607 + AluYa5 SINE Alu 1 311 0 981 199 16 0 chr12 132641881 132642067 -11144388 + MLT1H LTR MaLR 359 547 -2 201 301 82 14 chr12 132642085 132642231 -11144224 + L2 LINE L2 2004 2159 -1155 398 146 0 0 chr12 132642231 132642286 -11144169 - AluJ/FLAM SINE Alu -225 77 23 2313 100 0 7 chr12 132642351 132642651 -11143804 - AluSg SINE Alu -12 298 1 967 129 0 0 chr12 132642654 132642786 -11143669 - AluSq/x SINE Alu -181 132 1 2577 48 0 0 chr12 132642807 132643100 -11143355 - AluY SINE Alu -18 293 1 1211 193 0 0 chr12 132643155 132643352 -11143103 - AluSg/x SINE Alu -30 280 84 954 177 0 18 chr12 132643410 132643574 -11142881 + FRAM SINE Alu 1 153 -23 2146 125 7 0 chr12 132643574 132643878 -11142577 - AluSx SINE Alu -6 306 1 2426 57 0 3 chr12 132643898 132644204 -11142251 - AluY SINE Alu 0 305 1 261 145 16 16 chr12 132644205 132644267 -11142188 - L1M4 LINE L1 -1635 4511 4450 2066 137 3 13 chr12 132644317 132644631 -11141824 + AluSx SINE Alu 1 311 -1 1027 131 6 31 chr12 132644715 132644875 -11141580 - AluSg SINE Alu -154 156 1 658 169 11 38 chr12 132644880 132645064 -11141391 + CT-rich Low_complexity Low_complexity 2 180 0 634 128 11 0 chr12 132645180 132645274 -11141181 - AluS SINE Alu -217 96 2 2055 127 3 13 chr12 132645770 132646070 -11140385 + AluSx SINE Alu 1 297 -15 2278 77 13 26 chr12 132646070 132646382 -11140073 + AluY SINE Alu 1 308 -3 1815 128 4 0 chr12 132646962 132647211 -11139244 + AluSx SINE Alu 1 250 -62 2045 104 7 0 chr12 132647242 132647521 -11138934 + AluSx SINE Alu 1 281 -31 1086 146 0 23 chr12 132647616 132647787 -11138668 + AluJo SINE Alu 2 168 -144 529 296 74 0 chr12 132648631 132648793 -11137662 - MIR3 SINE MIR -5 203 30 1632 149 45 0 chr12 132648892 132649134 -11137321 + AluJb SINE Alu 11 263 -49 237 29 0 0 chr12 132649189 132649224 -11137231 + AluJb SINE Alu 268 302 0 1960 108 41 0 chr12 132649433 132649702 -11136753 + AluSq SINE Alu 21 300 -13 244 308 115 0 chr12 132650545 132650675 -11135780 - L2 LINE L2 -936 2378 2234 2168 107 10 0 chr12 132650675 132650966 -11135489 + AluSx SINE Alu 1 294 -18 2299 110 7 0 chr12 132650985 132651285 -11135170 + AluSx SINE Alu 1 302 -10 2222 92 7 7 chr12 132653182 132653477 -11132978 - AluSp SINE Alu -18 295 1 2375 93 3 0 chr12 132653513 132653814 -11132641 + AluSq SINE Alu 1 302 -11 215 183 17 17 chr12 132654470 132654530 -11131925 - MIR SINE MIR -109 153 94 268 332 109 24 chr12 132654681 132654892 -11131563 - MIR SINE MIR -26 236 8 2267 99 6 10 chr12 132654925 132655238 -11131217 - AluSx SINE Alu 0 312 1 1050 144 0 0 chr12 132655302 132655448 -11131007 - AluJb SINE Alu -30 282 137 1802 72 0 30 chr12 132655516 132655775 -11130680 + AluY SINE Alu 55 306 0 1890 156 7 3 chr12 132655783 132656078 -11130377 + AluSx SINE Alu 1 296 -16 2272 76 17 10 chr12 132656374 132656676 -11129779 + AluY SINE Alu 1 304 -7 1422 211 50 4 chr12 132657589 132657868 -11128587 + AluJb SINE Alu 1 292 -20 207 264 47 75 chr12 132657916 132658022 -11128433 - MIR SINE MIR -3 259 157 2219 108 3 0 chr12 132658565 132658862 -11127593 - AluSx SINE Alu -14 298 1 245 256 11 33 chr12 132658954 132659044 -11127411 + L1MC/D LINE L1 5649 5736 -2072 492 204 130 0 chr12 132659044 132659152 -11127303 + FLAM_A SINE Alu 1 122 -11 23 0 0 0 chr12 132659970 132659993 -11126462 + AT_rich Low_complexity Low_complexity 1 23 0 2406 77 0 3 chr12 132660003 132660302 -11126153 + AluSx SINE Alu 1 298 -14 1126 112 91 25 chr12 132660532 132660729 -11125726 - AluJo SINE Alu -19 293 84 1841 152 3 10 chr12 132661294 132661657 -11124798 - AluSx SINE Alu 0 312 1 1914 121 19 25 chr12 132661807 132662122 -11124333 - AluSq SINE Alu 0 313 1 2085 97 7 3 chr12 132662462 132662751 -11123704 + AluSg SINE Alu 1 290 -20 1474 188 17 10 chr12 132663510 132663803 -11122652 - AluJo SINE Alu -17 295 1 284 223 107 41 chr12 132663811 132663932 -11122523 - L1ME4a LINE L1 -25 6096 5968 1831 112 7 7 chr12 132664042 132664318 -11122137 - AluSc SINE Alu -33 276 1 950 110 7 0 chr12 132664446 132664582 -11121873 + AluSq/x SINE Alu 1 137 -176 2003 128 0 10 chr12 132664878 132665191 -11121264 - AluSg SINE Alu 0 310 1 2246 82 3 0 chr12 132665386 132665678 -11120777 - AluSp SINE Alu -15 298 6 1370 155 4 32 chr12 132666254 132666506 -11119949 + AluSx SINE Alu 1 245 -67 619 147 45 186 chr12 132666508 132666685 -11119770 + AluJo/FRAM SINE Alu 137 288 -14 1820 146 0 13 chr12 132666949 132667258 -11119197 - AluSq SINE Alu -3 310 6 24 32 0 0 chr12 132667385 132667416 -11119039 + AT_rich Low_complexity Low_complexity 1 31 0 629 221 13 65 chr12 132667739 132667893 -11118562 - FRAM SINE Alu -30 146 1 982 82 0 15 chr12 132668122 132668256 -11118199 - AluSq/x SINE Alu -180 132 1 1919 113 3 33 chr12 132668282 132668584 -11117871 + AluSx SINE Alu 13 305 -7 1877 142 10 10 chr12 132669710 132670012 -11116443 - AluSx SINE Alu -10 302 1 1272 179 119 15 chr12 132670290 132670558 -11115897 - AluJo SINE Alu -6 296 1 633 197 128 37 chr12 132670908 132671096 -11115359 - AluSq SINE Alu -107 206 2 311 143 36 0 chr12 132671160 132671216 -11115239 + Tigger2 DNA MER2_type 1 58 -2660 1517 120 30 0 chr12 132671216 132671449 -11115006 - AluSq SINE Alu 0 313 74 841 65 0 0 chr12 132671450 132671558 -11114897 - AluSg SINE Alu -202 108 1 755 83 0 37 chr12 132671581 132671690 -11114765 + AluSg/x SINE Alu 199 303 -7 729 194 0 8 chr12 132671697 132671831 -11114624 + FLAM_C SINE Alu 1 133 0 2240 91 0 0 chr12 132672096 132672392 -11114063 - AluSg SINE Alu -14 296 1 246 171 12 65 chr12 132672645 132672815 -11113640 + C-rich Low_complexity Low_complexity 3 163 0 313 336 0 29 chr12 132672948 132673088 -11113367 + G-rich Low_complexity Low_complexity 5 140 0 435 299 215 19 chr12 132673386 132673861 -11112594 - L2 LINE L2 -2520 794 227 2112 118 7 0 chr12 132673875 132674180 -11112275 + AluSx SINE Alu 1 307 -5 671 172 86 8 chr12 132674594 132674722 -11111733 + FLAM_C SINE Alu 6 143 0 1695 176 0 3 chr12 132674773 132675063 -11111392 - AluJb SINE Alu -23 289 1 1309 216 76 54 chr12 132675085 132675419 -11111036 + Charlie1a DNA MER1_type 1 326 -2435 396 0 0 0 chr12 132675419 132675463 -11110992 + (TA)n Simple_repeat Simple_repeat 2 45 0 1649 163 48 3 chr12 132675463 132675758 -11110697 - AluJo SINE Alu -4 308 1 1309 216 76 54 chr12 132675758 132675894 -11110561 + Charlie1a DNA MER1_type 325 1425 -30 247 147 0 0 chr12 132675907 132675941 -11110514 - Tigger2 DNA MER2_type -2683 35 2 251 228 102 142 chr12 132675995 132676094 -11110361 - MER5A DNA MER1_type 0 189 88 2400 51 7 0 chr12 132676094 132676389 -11110066 - AluY SINE Alu -14 297 1 251 228 102 142 chr12 132676389 132676459 -11109996 - MER5A DNA MER1_type -101 88 27 1432 205 0 21 chr12 132676459 132676747 -11109708 - AluJo SINE Alu -30 282 1 251 228 102 142 chr12 132676747 132676773 -11109682 - MER5A DNA MER1_type -162 27 1 2162 123 0 0 chr12 132677349 132677659 -11108796 + AluSx SINE Alu 1 310 -2 1668 164 99 36 chr12 132677680 132678045 -11108410 + MSTB LTR MaLR 2 389 -37 905 122 7 0 chr12 132678045 132678192 -11108263 + (TA)n Simple_repeat Simple_repeat 2 149 0 2028 121 3 0 chr12 132678194 132678483 -11107972 - AluSx SINE Alu -21 291 2 3463 88 46 0 chr12 132678847 132679322 -11107133 - MER41A LTR ERV1 -57 497 1 1046 113 19 0 chr12 132679415 132679574 -11106881 + AluSc SINE Alu 135 296 -13 217 373 93 8 chr12 132679575 132679693 -11106762 + L2 LINE L2 1061 1188 -2126 2346 79 3 0 chr12 132679727 132680031 -11106424 - AluSx SINE Alu -7 305 1 187 245 78 78 chr12 132680037 132680139 -11106316 + MIR SINE MIR 68 169 -93 375 215 61 149 chr12 132680279 132680493 -11105962 + MIR SINE MIR 12 206 -56 786 173 50 0 chr12 132681776 132681944 -11104511 - AluSg/x SINE Alu 0 309 135 570 223 112 25 chr12 132681944 132681989 -11104466 - MLT1D LTR MaLR -270 235 195 1465 152 88 28 chr12 132681989 132682134 -11104321 - AluSx SINE Alu -12 300 165 2141 105 7 0 chr12 132682134 132682429 -11104026 - AluSp SINE Alu -16 297 1 1465 152 88 28 chr12 132682429 132682566 -11103889 - AluSx SINE Alu -147 165 1 570 223 112 25 chr12 132682566 132682717 -11103738 - MLT1D LTR MaLR -310 195 22 1231 138 131 51 chr12 132683443 132683718 -11102737 - AluJo SINE Alu 0 312 16 21 36 0 0 chr12 132684193 132684221 -11102234 + AT_rich Low_complexity Low_complexity 1 28 0 2201 97 0 0 chr12 132684251 132684541 -11101914 - AluSg SINE Alu -15 295 6 1991 117 10 3 chr12 132684546 132684845 -11101610 - AluSx SINE Alu -11 301 1 1561 126 156 8 chr12 132684913 132685176 -11101279 - AluSx SINE Alu 0 302 1 1784 159 3 3 chr12 132685179 132685350 -11101105 - AluSq SINE Alu -9 304 134 188 33 0 33 chr12 132685350 132685380 -11101075 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2191 81 3 0 chr12 132685380 132685664 -11100791 - AluSp SINE Alu -28 285 1 1784 159 3 3 chr12 132685664 132685793 -11100662 - AluSq SINE Alu -177 136 3 2066 114 7 0 chr12 132686126 132686415 -11100040 + AluSx SINE Alu 6 296 -16 2242 74 3 7 chr12 132687199 132687495 -11098960 + AluSg1 SINE Alu 1 295 -14 26 50 0 0 chr12 132687692 132687732 -11098723 + AT_rich Low_complexity Low_complexity 1 40 0 2169 84 0 13 chr12 132687735 132688034 -11098421 + AluY SINE Alu 1 295 -16 456 176 14 0 chr12 132688054 132688128 -11098327 - tRNA-Asp-GAC tRNA tRNA 0 75 1 661 140 175 0 chr12 132688153 132688267 -11098188 + AluJo SINE Alu 2 135 -177 1908 122 10 3 chr12 132688267 132688562 -11097893 + AluSx SINE Alu 1 297 -15 819 247 110 23 chr12 132688567 132688786 -11097669 - MIR SINE MIR 0 262 25 737 261 22 11 chr12 132689190 132689370 -11097085 + MIR SINE MIR 4 185 -77 1803 24 0 0 chr12 132689443 132689653 -11096802 - AluYb8 SINE Alu -4 314 105 265 258 0 0 chr12 132689674 132689736 -11096719 + MIR SINE MIR 201 262 0 1106 163 48 10 chr12 132689782 132689991 -11096464 - AluJo SINE Alu -95 217 1 2062 123 0 19 chr12 132690118 132690436 -11096019 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 132690474 132690496 -11095959 + AT_rich Low_complexity Low_complexity 1 22 0 369 162 0 0 chr12 132690654 132690722 -11095733 + (CA)n Simple_repeat Simple_repeat 1 68 0 440 62 16 0 chr12 132690873 132690937 -11095518 + (CA)n Simple_repeat Simple_repeat 1 65 0 2280 52 12 58 chr12 132691366 132691692 -11094763 + AluY SINE Alu 1 311 0 2008 141 0 0 chr12 132691958 132692263 -11094192 + AluSx SINE Alu 1 305 -7 1340 139 0 5 chr12 132692289 132692497 -11093958 + AluSg/x SINE Alu 85 291 -19 1544 185 12 33 chr12 132692590 132692919 -11093536 + L1M4 LINE L1 4710 5031 -1115 883 105 23 0 chr12 132692919 132693052 -11093403 + AluJo SINE Alu 1 136 -176 1508 191 45 33 chr12 132693052 132693504 -11092951 + L1M4 LINE L1 5030 5490 -684 2005 123 3 19 chr12 132693504 132693812 -11092643 + AluSx SINE Alu 1 303 -9 1508 191 45 33 chr12 132693812 132693967 -11092488 + L1M4 LINE L1 5490 5642 -532 528 59 0 0 chr12 132693968 132694036 -11092419 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1347 100 0 0 chr12 132694167 132694347 -11092108 + AluSg/x SINE Alu 114 293 -17 685 108 0 0 chr12 132694355 132694457 -11091998 - L1PB1 LINE L1 0 6151 6050 1475 135 142 0 chr12 132694457 132694717 -11091738 - AluJb SINE Alu -1 301 5 1251 154 129 50 chr12 132695735 132696015 -11090440 - AluJb SINE Alu -10 302 1 236 296 0 0 chr12 132696211 132696265 -11090190 + polypyrimidine Low_complexity Low_complexity 2 55 0 2180 94 6 25 chr12 132697216 132697534 -11088921 - AluSx SINE Alu 0 312 1 644 261 113 42 chr12 132697563 132697801 -11088654 - MIR SINE MIR -6 256 2 6467 60 22 52 chr12 132697850 132699698 -11086757 - SVA Other Other -551 1386 1 1485 225 53 11 chr12 132699708 132700068 -11086387 - MER119 DNA MER1_type -206 377 3 1388 110 142 5 chr12 132700422 132700640 -11085815 + AluSg SINE Alu 6 253 -57 870 116 33 0 chr12 132700640 132700761 -11085694 - AluSq/x SINE Alu -177 136 12 220 222 24 32 chr12 132700889 132701015 -11085440 + (TTGG)n Simple_repeat Simple_repeat 1 125 0 1863 131 0 0 chr12 132701133 132701408 -11085047 - AluSx SINE Alu -37 275 1 444 167 26 0 chr12 132701477 132701555 -11084900 - FLAM SINE Alu -23 120 41 812 137 0 0 chr12 132701574 132701698 -11084757 - FLAM_C SINE Alu -19 124 1 277 118 20 0 chr12 132701698 132701749 -11084706 + L1MB8 LINE L1 5283 5334 -812 753 153 0 9 chr12 132701750 132701861 -11084594 + AluJo/FLAM SINE Alu 2 111 -201 1999 132 0 0 chr12 132701862 132702157 -11084298 - AluSx SINE Alu -17 295 1 2184 91 16 7 chr12 132702166 132702473 -11083982 - AluSp SINE Alu 0 313 4 4397 149 30 43 chr12 132702492 132702962 -11083493 + L1MB8 LINE L1 5295 5769 -409 1924 151 0 7 chr12 132702962 132703267 -11083188 + AluJo SINE Alu 1 303 -9 1860 130 0 44 chr12 132703276 132703592 -11082863 + AluSx SINE Alu 3 304 -8 4397 149 30 43 chr12 132703592 132703626 -11082829 + L1MB8 LINE L1 5777 5810 -368 1682 174 26 66 chr12 132703626 132703781 -11082674 + MLT1A1 LTR MaLR 1 161 -204 1912 132 4 0 chr12 132703781 132704084 -11082371 + AluY SINE Alu 1 304 0 1682 174 26 66 chr12 132704084 132704269 -11082186 + MLT1A1 LTR MaLR 161 328 -37 2043 126 7 0 chr12 132704269 132704571 -11081884 - AluSx SINE Alu 0 312 9 1682 174 26 66 chr12 132704571 132704608 -11081847 + MLT1A1 LTR MaLR 328 365 0 4397 149 30 43 chr12 132704608 132704952 -11081503 + L1MB8 LINE L1 5810 6145 -33 2256 100 0 6 chr12 132704952 132705263 -11081192 - AluSc SINE Alu 0 309 1 4397 149 30 43 chr12 132705263 132705292 -11081163 + L1MB8 LINE L1 6145 6173 -5 488 276 124 23 chr12 132705299 132705516 -11080939 + L1MD2 LINE L1 6121 6359 0 1171 157 10 5 chr12 132705547 132705740 -11080715 - AluSg/x SINE Alu 0 326 130 2409 61 0 0 chr12 132705740 132706036 -11080419 - AluSx SINE Alu -16 296 1 1171 157 10 5 chr12 132706036 132706083 -11080372 - AluSg/x SINE Alu -196 130 85 771 185 30 0 chr12 132706083 132706218 -11080237 - AluJo SINE Alu -62 250 112 795 160 0 47 chr12 132706242 132706392 -11080063 - AluJo SINE Alu -169 143 1 22 0 0 0 chr12 132706479 132706501 -11079954 + AT_rich Low_complexity Low_complexity 1 22 0 1436 165 58 8 chr12 132706798 132707058 -11079397 + AluJo SINE Alu 1 273 -39 516 265 11 53 chr12 132707077 132707214 -11079241 - L1ME LINE L1 -517 5645 5516 693 198 0 16 chr12 132707214 132707366 -11079089 + FLAM_A SINE Alu 1 150 0 516 265 11 53 chr12 132707366 132707416 -11079039 - L1ME LINE L1 -646 5516 5465 586 231 8 8 chr12 132707416 132707533 -11078922 + FLAM_C SINE Alu 1 117 -16 859 172 0 0 chr12 132707577 132707728 -11078727 - AluSg/x SINE Alu -28 282 132 2555 42 0 0 chr12 132707728 132708037 -11078418 - AluY SINE Alu -2 309 1 1693 151 63 3 chr12 132708091 132708376 -11078079 - AluSx SINE Alu -10 302 1 376 248 149 6 chr12 132708379 132708494 -11077961 - L1ME LINE L1 -807 5339 5193 195 69 0 0 chr12 132708494 132708523 -11077932 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 376 248 149 6 chr12 132708523 132708568 -11077887 - L1ME LINE L1 -953 5193 5156 314 256 88 44 chr12 132708575 132708712 -11077743 - L1ME LINE L1 -1074 5072 4930 1802 106 4 0 chr12 132708737 132708991 -11077464 + AluSx SINE Alu 1 255 -57 912 114 30 0 chr12 132708992 132709123 -11077332 - AluSq/x SINE Alu -178 135 1 2151 107 3 10 chr12 132710237 132710535 -11075920 - AluSx SINE Alu -15 297 2 2212 102 0 0 chr12 132710722 132711017 -11075438 + AluSx SINE Alu 5 299 -13 1515 186 49 0 chr12 132711022 132711285 -11075170 - AluJb SINE Alu -17 295 20 1383 201 11 4 chr12 132711290 132711554 -11074901 - AluJo SINE Alu -13 299 34 782 133 0 44 chr12 132711638 132711773 -11074682 - FLAM_C SINE Alu 0 133 5 2392 84 3 0 chr12 132712292 132712590 -11073865 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 132713476 132713498 -11072957 + AT_rich Low_complexity Low_complexity 1 22 0 2353 107 0 0 chr12 132714444 132714754 -11071701 + AluSq SINE Alu 1 310 -3 909 99 8 0 chr12 132715089 132715241 -11071214 + AluSg/x SINE Alu 52 187 -123 2108 148 0 0 chr12 132717847 132718152 -11068303 + AluSx SINE Alu 3 307 -5 973 224 50 12 chr12 132718267 132718508 -11067947 - MIR SINE MIR -1 261 12 2566 75 0 0 chr12 132718562 132718868 -11067587 + AluSp SINE Alu 1 306 -7 1751 141 67 18 chr12 132719187 132719471 -11066984 + AluJb SINE Alu 1 298 -14 180 326 51 41 chr12 132719867 132719965 -11066490 - L2 LINE L2 -42 3230 3132 742 173 0 8 chr12 132720585 132720712 -11065743 - FLAM_C SINE Alu -7 126 1 264 293 34 61 chr12 132720923 132721070 -11065385 + MER5A DNA MER1_type 47 189 0 2266 95 27 0 chr12 132721215 132721509 -11064946 + AluSq SINE Alu 1 302 -11 1163 163 41 86 chr12 132721611 132721802 -11064653 - MER33 DNA MER1_type -2262 323 152 1883 158 17 0 chr12 132721802 132722099 -11064356 - AluJo SINE Alu -10 302 1 1163 163 41 86 chr12 132722099 132722245 -11064210 - MER33 DNA MER1_type -2433 152 1 2537 93 0 0 chr12 132722564 132722877 -11063578 + AluSq SINE Alu 1 313 0 2267 93 7 10 chr12 132724270 132724572 -11061883 + AluSx SINE Alu 1 301 -11 2028 173 18 0 chr12 132724609 132724950 -11061505 + MER7A DNA MER2_type 2 346 0 2003 116 53 0 chr12 132725026 132725310 -11061145 + AluSx SINE Alu 1 299 -13 2093 113 7 0 chr12 132725907 132726214 -11060241 - AluSx SINE Alu 0 309 1 21 0 0 0 chr12 132726224 132726245 -11060210 + AT_rich Low_complexity Low_complexity 1 21 0 1760 128 103 7 chr12 132726314 132726595 -11059860 - AluSx SINE Alu -4 308 1 2404 73 0 19 chr12 132726601 132726915 -11059540 - AluSc SINE Alu -1 308 1 1604 169 16 62 chr12 132727062 132727178 -11059277 + AluJo SINE Alu 3 123 -189 2183 128 7 0 chr12 132727178 132727483 -11058972 - AluSx SINE Alu -5 307 1 1604 169 16 62 chr12 132727483 132727686 -11058769 + AluJo SINE Alu 123 307 -5 180 0 0 0 chr12 132728215 132728235 -11058220 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 132728456 132728479 -11057976 + AT_rich Low_complexity Low_complexity 1 23 0 2314 101 0 0 chr12 132728829 132729125 -11057330 - AluSx SINE Alu -16 296 1 630 231 47 24 chr12 132730788 132731000 -11055455 + L2 LINE L2 2504 2720 -594 2063 126 14 0 chr12 132731415 132731708 -11054747 - AluSx SINE Alu -15 297 1 834 176 0 0 chr12 132731728 132731859 -11054596 - FLAM_C SINE Alu -2 131 1 381 264 71 14 chr12 132731859 132731999 -11054456 - L1MC4a LINE L1 -1982 5826 5679 392 320 75 14 chr12 132732081 132732228 -11054227 - L1MC4a LINE L1 -2143 5665 5510 353 273 67 53 chr12 132732490 132732699 -11053756 - MLT1L LTR MaLR -41 574 363 1194 176 124 73 chr12 132732729 132733155 -11053300 - LTR7 LTR ERV1 -2 448 1 2218 106 3 3 chr12 132733202 132733513 -11052942 - AluSx SINE Alu -1 311 1 416 244 159 40 chr12 132733716 132733892 -11052563 + MLT1J LTR MaLR 5 201 -310 414 0 0 0 chr12 132733892 132733938 -11052517 + (TG)n Simple_repeat Simple_repeat 2 47 0 774 211 21 0 chr12 132733940 132734082 -11052373 - FRAM SINE Alu -30 146 2 249 296 28 0 chr12 132734082 132734149 -11052306 + MLT1J LTR MaLR 194 262 -249 302 151 8 202 chr12 132734149 132734176 -11052279 + MER21B LTR ERV1 1 32 -831 2102 127 10 0 chr12 132734176 132734476 -11051979 + AluSx SINE Alu 1 303 -9 302 151 8 202 chr12 132734476 132734567 -11051888 + MER21B LTR ERV1 32 96 -767 1070 226 103 11 chr12 132734576 132734837 -11051618 + MER21B LTR ERV1 21 305 -558 980 163 6 22 chr12 132734838 132735016 -11051439 + AluJb SINE Alu 137 311 -1 2390 66 26 10 chr12 132735016 132735321 -11051134 + AluY SINE Alu 1 310 -1 2380 49 0 18 chr12 132735344 132735656 -11050799 + AluY SINE Alu 1 307 0 1234 267 63 39 chr12 132735703 132736145 -11050310 + MER21B LTR ERV1 361 813 -50 1733 144 13 50 chr12 132736165 132736464 -11049991 + AluJo SINE Alu 1 288 -24 1969 146 0 17 chr12 132736467 132736769 -11049686 + AluJb SINE Alu 1 297 -15 1378 189 78 69 chr12 132736879 132736934 -11049521 + MLT1C LTR MaLR 1 54 -413 2023 120 23 3 chr12 132736934 132737233 -11049222 + AluSx SINE Alu 1 305 -7 1378 189 78 69 chr12 132737233 132737638 -11048817 + MLT1C LTR MaLR 54 465 -2 1873 167 0 10 chr12 132737656 132737961 -11048494 - AluSx SINE Alu -10 302 1 234 191 0 0 chr12 132737961 132738008 -11048447 + (TG)n Simple_repeat Simple_repeat 1 47 0 993 185 82 0 chr12 132738008 132738159 -11048296 - AluJo SINE Alu -29 283 113 363 73 0 0 chr12 132738159 132738214 -11048241 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 993 185 82 0 chr12 132738214 132738246 -11048209 - AluJo SINE Alu -199 113 85 1197 123 0 0 chr12 132738750 132738913 -11047542 + AluSg/x SINE Alu 146 308 -4 247 331 99 7 chr12 132739439 132739590 -11046865 - L2 LINE L2 -576 2738 2574 933 77 8 0 chr12 132739929 132740046 -11046409 + AluSq/x SINE Alu 1 118 -194 2066 118 17 3 chr12 132740070 132740358 -11046097 + AluSp SINE Alu 3 294 -19 1956 106 78 11 chr12 132740359 132740641 -11045814 + AluSq SINE Alu 1 301 -12 360 0 0 0 chr12 132740825 132740865 -11045590 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2111 109 3 22 chr12 132740878 132741191 -11045264 + AluSc SINE Alu 3 309 0 2195 96 10 10 chr12 132742583 132742884 -11043571 + AluSx SINE Alu 1 301 -11 2028 173 18 0 chr12 132742921 132743262 -11043193 + MER7A DNA MER2_type 2 346 0 1979 120 53 0 chr12 132743338 132743622 -11042833 + AluSx SINE Alu 1 299 -13 2015 113 11 3 chr12 132744219 132744526 -11041929 - AluSx SINE Alu 0 309 1 21 0 0 0 chr12 132744536 132744557 -11041898 + AT_rich Low_complexity Low_complexity 1 21 0 1725 128 103 11 chr12 132744626 132744908 -11041547 - AluSx SINE Alu -4 308 1 1587 100 9 22 chr12 132744914 132745143 -11041312 - AluSg/x SINE Alu -1 311 86 21 0 0 0 chr12 132745179 132745200 -11041255 + AT_rich Low_complexity Low_complexity 1 21 0 1209 242 169 18 chr12 132745872 132746493 -11039962 + L2 LINE L2 2504 3221 -92 2150 114 3 3 chr12 132747010 132747300 -11039155 + AluSx SINE Alu 1 290 -22 637 180 230 0 chr12 132747303 132747442 -11039013 + AluJb SINE Alu 131 301 -11 2180 135 0 0 chr12 132747632 132747936 -11038519 + AluSx SINE Alu 1 304 -8 2410 84 0 0 chr12 132748471 132748767 -11037688 - AluSg SINE Alu -14 296 1 1147 42 0 49 chr12 132748767 132748910 -11037545 - AluSc SINE Alu -173 136 1 1277 155 124 19 chr12 132748914 132749179 -11037276 - AluSg SINE Alu -3 307 15 437 191 0 18 chr12 132749256 132749366 -11037089 - L1ME3A LINE L1 -216 5954 5847 420 261 59 0 chr12 132749583 132749702 -11036753 - L1ME3A LINE L1 -479 5642 5517 2164 106 10 7 chr12 132749805 132750106 -11036349 - AluSx SINE Alu -10 302 1 726 148 0 0 chr12 132750129 132750251 -11036204 - L1PB1 LINE L1 0 6151 6030 1944 107 9 54 chr12 132750641 132750816 -11035639 - AluSq SINE Alu -10 303 147 2157 110 20 0 chr12 132750816 132751108 -11035347 - AluSp SINE Alu -13 300 3 1944 107 9 54 chr12 132751108 132751249 -11035206 - AluSq SINE Alu -166 147 1 247 331 99 7 chr12 132751587 132751738 -11034717 + L2 LINE L2 2574 2738 -576 1197 123 0 0 chr12 132752263 132752426 -11034029 - AluSg/x SINE Alu -4 308 146 273 333 23 0 chr12 132752799 132752886 -11033569 - L2 LINE L2 -4 3268 3180 1049 249 96 65 chr12 132752897 132753057 -11033398 + L2 LINE L2 2746 2900 -413 2021 155 3 0 chr12 132753057 132753366 -11033089 - AluSx SINE Alu -2 310 1 1049 249 96 65 chr12 132753366 132753751 -11032704 + L2 LINE L2 2900 3309 -4 2294 108 0 10 chr12 132753925 132754232 -11032223 + AluSx SINE Alu 1 304 -8 26 0 0 0 chr12 132754319 132754345 -11032110 + AT_rich Low_complexity Low_complexity 1 26 0 1618 149 50 0 chr12 132754345 132754586 -11031869 - AluSq SINE Alu -60 253 1 1449 151 163 4 chr12 132755252 132755510 -11030945 - AluJo SINE Alu -3 299 1 2055 152 0 0 chr12 132756397 132756687 -11029768 - AluSx SINE Alu -22 290 1 801 210 68 0 chr12 132756760 132756922 -11029533 - AluJb SINE Alu -24 288 116 2115 120 17 0 chr12 132756925 132757216 -11029239 - AluSx SINE Alu -16 296 1 1865 162 3 7 chr12 132757223 132757520 -11028935 - AluJo SINE Alu -16 296 1 22 0 0 0 chr12 132757585 132757607 -11028848 + AT_rich Low_complexity Low_complexity 1 22 0 3010 35 0 0 chr12 132758000 132758348 -11028107 - L1PA3 LINE L1 -3 6152 5805 2003 138 7 10 chr12 132758543 132758840 -11027615 + AluJb SINE Alu 3 298 -14 1969 128 27 14 chr12 132759732 132760029 -11026426 - AluSx SINE Alu -11 301 1 2128 87 43 0 chr12 132760338 132760614 -11025841 - AluSp SINE Alu -25 288 1 2120 134 0 0 chr12 132760634 132760925 -11025530 - AluSx SINE Alu -21 291 1 307 264 146 98 chr12 132760937 132761055 -11025400 - MIR SINE MIR 0 262 151 1788 110 20 12 chr12 132761055 132761309 -11025146 + AluSx SINE Alu 34 289 -23 2253 94 7 7 chr12 132761316 132761630 -11024825 + AluSp SINE Alu 12 310 -3 307 264 146 98 chr12 132761630 132761734 -11024721 - MIR SINE MIR -116 146 5 2161 112 0 10 chr12 132761734 132762037 -11024418 + AluSg SINE Alu 1 300 -10 2418 88 3 0 chr12 132762494 132762799 -11023656 - AluSp SINE Alu -7 306 1 216 0 0 0 chr12 132762956 132762980 -11023475 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2444 68 0 7 chr12 132762994 132763288 -11023167 - AluY SINE Alu -19 292 1 1902 162 14 3 chr12 132763291 132763587 -11022868 - AluSx SINE Alu -13 299 1 2206 73 11 0 chr12 132763755 132764027 -11022428 + AluY SINE Alu 3 277 -34 315 0 0 0 chr12 132764033 132764068 -11022387 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 30 59 0 0 chr12 132764111 132764162 -11022293 + AT_rich Low_complexity Low_complexity 1 51 0 948 133 0 7 chr12 132765335 132765470 -11020985 - FLAM_C SINE Alu -9 134 1 205 403 0 22 chr12 132765753 132765887 -11020568 - L3 LINE CR1 -353 1224 1094 1956 162 7 0 chr12 132765939 132766236 -11020219 - AluJo SINE Alu -13 299 1 227 182 0 55 chr12 132766236 132766284 -11020171 - Alu SINE Alu -252 47 1 * 239 206 0 59 chr12 132766284 132766332 -11020123 - AluJ/monomer SINE Alu -270 29 1 272 191 0 59 chr12 132766332 132766380 -11020075 - Alu SINE Alu -273 29 1 286 236 0 0 chr12 132766623 132766678 -11019777 - MER3 DNA MER1_type 0 209 155 1982 131 14 3 chr12 132766691 132766982 -11019473 + AluSx SINE Alu 11 304 -8 673 108 0 0 chr12 132767041 132767160 -11019295 + AluSg/x SINE Alu 187 305 0 511 174 106 61 chr12 132767178 132767276 -11019179 - MER3 DNA MER1_type -24 138 31 2353 86 3 10 chr12 132767276 132767579 -11018876 + AluSq SINE Alu 1 301 -12 511 174 106 61 chr12 132767579 132767612 -11018843 - MER3 DNA MER1_type -131 31 1 1934 171 0 0 chr12 132770815 132771108 -11015347 + AluJb SINE Alu 1 293 -19 1998 121 72 7 chr12 132771109 132771399 -11015056 + AluSq SINE Alu 1 309 -4 360 0 0 0 chr12 132771574 132771614 -11014841 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1881 98 0 0 chr12 132771627 132771862 -11014593 + AluSc SINE Alu 3 237 -72 1475 187 48 8 chr12 132771970 132772238 -11014217 - AluJb SINE Alu -14 298 20 1625 144 70 7 chr12 132772255 132772525 -11013930 - AluJo SINE Alu -25 287 1 1618 125 89 53 chr12 132772533 132772814 -11013641 - AluSx SINE Alu -13 299 9 1289 145 186 8 chr12 132772863 132773111 -11013344 + AluSg1 SINE Alu 1 292 -17 2077 92 6 80 chr12 132773114 132773428 -11013027 + AluSq SINE Alu 1 291 -22 1994 111 32 4 chr12 132773585 132773865 -11012590 + AluSq SINE Alu 15 302 -11 1093 163 45 86 chr12 132773967 132774157 -11012298 - MER33 DNA MER1_type -2262 323 152 1917 158 17 0 chr12 132774157 132774454 -11012001 - AluJo SINE Alu -10 302 1 1093 163 45 86 chr12 132774454 132774600 -11011855 - MER33 DNA MER1_type -2433 152 1 2325 115 7 0 chr12 132775268 132775573 -11010882 - AluSx SINE Alu -5 307 1 186 245 78 78 chr12 132775579 132775681 -11010774 + MIR SINE MIR 68 169 -93 366 215 61 149 chr12 132775821 132776035 -11010420 + MIR SINE MIR 12 206 -56 730 193 0 15 chr12 132777767 132777902 -11008553 + FLAM_A SINE Alu 1 133 0 2477 66 3 0 chr12 132777905 132778206 -11008249 + AluY SINE Alu 1 302 -9 182 207 86 147 chr12 132778299 132778415 -11008040 - MIR SINE MIR -2 260 152 805 241 91 17 chr12 132778936 132779168 -11007287 - MIR SINE MIR 0 262 14 889 202 13 70 chr12 132779212 132779252 -11007203 - AluJo SINE Alu -4 308 267 2606 51 0 6 chr12 132779252 132779565 -11006890 + AluY SINE Alu 1 311 0 889 202 13 70 chr12 132779565 132779752 -11006703 - AluJo SINE Alu -45 267 94 2313 94 7 7 chr12 132779979 132780286 -11006169 - AluSq SINE Alu -6 307 1 662 349 52 30 chr12 132780286 132780748 -11005707 - ERVL LTR ERVL -1275 4489 4018 364 286 58 58 chr12 132780793 132780999 -11005456 - ERVL LTR ERVL -3264 2500 2295 588 109 54 0 chr12 132781016 132781108 -11005347 - AluSg/x SINE Alu -21 291 195 2303 59 7 3 chr12 132781219 132781505 -11004950 - AluY SINE Alu -24 287 1 279 210 0 0 chr12 132781506 132781568 -11004887 - L1M4 LINE L1 -944 5202 5141 * 1481 230 25 0 chr12 132781564 132781921 -11004534 + L1MC4 LINE L1 6716 7081 -961 2161 103 14 0 chr12 132781935 132782217 -11004238 + AluSx SINE Alu 12 297 -15 42 0 0 0 chr12 132782565 132782607 -11003848 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr12 132782708 132782736 -11003719 + AT_rich Low_complexity Low_complexity 1 28 0 1092 198 51 38 chr12 132783025 132783347 -11003108 + L1ME2 LINE L1 5844 6184 0 1979 124 7 0 chr12 132783471 132783753 -11002702 - AluSq SINE Alu -2 311 28 1812 147 24 20 chr12 132783932 132784224 -11002231 + AluJb SINE Alu 3 295 -17 2219 93 7 3 chr12 132784225 132784516 -11001939 + AluY SINE Alu 1 292 -19 2275 92 7 7 chr12 132784712 132785018 -11001437 + AluSp SINE Alu 1 306 -7 360 64 0 0 chr12 132785201 132785248 -11001207 + (CA)n Simple_repeat Simple_repeat 2 48 0 440 62 16 0 chr12 132785399 132785463 -11000992 + (CA)n Simple_repeat Simple_repeat 1 65 0 2167 90 10 7 chr12 132785894 132786194 -11000261 + AluSg SINE Alu 1 301 -9 184 205 54 152 chr12 132786287 132786399 -11000056 - MIR SINE MIR -2 260 160 189 0 0 0 chr12 132786500 132786521 -10999934 + (A)n Simple_repeat Simple_repeat 1 21 0 1131 139 0 12 chr12 132786628 132786801 -10999654 + AluJb SINE Alu 124 294 -18 746 122 81 8 chr12 132786909 132787032 -10999423 - FLAM_C SINE Alu -1 132 1 647 167 160 0 chr12 132788174 132788324 -10998131 + L1MD2 LINE L1 6168 6341 -18 216 255 7 121 chr12 132788366 132788508 -10997947 + MIR SINE MIR 10 136 -126 1378 184 112 22 chr12 132788508 132788785 -10997670 + AluJb SINE Alu 1 302 0 2004 153 0 13 chr12 132789042 132789355 -10997100 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr12 132789382 132789403 -10997052 + AT_rich Low_complexity Low_complexity 1 21 0 1656 94 67 40 chr12 132790304 132790439 -10996016 + L1MA1 LINE L1 5998 6128 -174 2408 96 0 0 chr12 132790439 132790740 -10995715 + AluSx SINE Alu 1 301 -11 1656 94 67 40 chr12 132790740 132790901 -10995554 + L1MA1 LINE L1 6128 6302 0 2064 122 3 42 chr12 132791524 132791700 -10994755 - AluSx SINE Alu -13 299 139 2236 106 0 3 chr12 132791700 132792011 -10994444 - AluSg SINE Alu 0 310 1 2064 122 3 42 chr12 132792011 132792145 -10994310 - AluSx SINE Alu -173 139 1 285 237 227 10 chr12 132792165 132792262 -10994193 - L2 LINE L2 -4 3268 3151 496 260 170 40 chr12 132792552 132792729 -10993726 - L1M4 LINE L1 -743 5403 5190 1733 89 9 0 chr12 132792729 132792953 -10993502 - AluSg/x SINE Alu -1 311 86 496 260 170 40 chr12 132792953 132792998 -10993457 - L1M4 LINE L1 -956 5190 5152 301 237 40 127 chr12 132793305 132793478 -10992977 + L1ME4a LINE L1 5964 6121 0 * 351 293 82 34 chr12 132793472 132793619 -10992836 + L1MB5 LINE L1 5269 5422 -2386 2251 182 33 45 chr12 132793722 132793811 -10992644 - L1MC4 LINE L1 -364 7678 7589 2029 105 26 26 chr12 132793811 132794124 -10992331 - AluSq SINE Alu 0 313 1 2327 112 0 0 chr12 132794125 132794421 -10992034 - AluSx SINE Alu -16 296 1 2251 182 33 45 chr12 132794421 132794910 -10991545 - L1MC4 LINE L1 -452 7590 7105 198 0 0 0 chr12 132794920 132794942 -10991513 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1793 144 7 10 chr12 132794942 132795223 -10991232 - AluSx SINE Alu -29 283 2 2049 149 0 0 chr12 132795738 132796033 -10990422 - AluSx SINE Alu -17 295 1 2423 52 9 58 chr12 132796299 132796626 -10989829 - AluY SINE Alu 0 311 1 832 175 81 12 chr12 132796787 132796947 -10989508 + AluJo SINE Alu 29 199 -113 296 261 89 33 chr12 132796951 132797131 -10989324 + AluY SINE Alu 41 230 -71 688 177 35 21 chr12 132797387 132797528 -10988927 + MLT1A1 LTR MaLR 14 156 -209 2168 108 3 19 chr12 132797529 132797665 -10988790 + AluSx SINE Alu 1 138 -174 2505 69 7 0 chr12 132797665 132797970 -10988485 + AluSq SINE Alu 1 307 -6 2168 108 3 19 chr12 132797970 132798149 -10988306 + AluSx SINE Alu 138 311 -1 1105 117 172 11 chr12 132799238 132799418 -10987037 - AluSg1 SINE Alu -51 258 50 2464 64 0 7 chr12 132799522 132799820 -10986635 - AluSc SINE Alu -13 296 1 1532 178 11 18 chr12 132800620 132800901 -10985554 + AluJb SINE Alu 6 284 -28 244 265 29 0 chr12 132801064 132801132 -10985323 - MER81 DNA DNA 0 114 45 1069 201 0 43 chr12 132801862 132802063 -10984392 + L1MB5 LINE L1 5587 5776 -398 2331 78 7 0 chr12 132802063 132802346 -10984109 + AluSx SINE Alu 1 285 -27 1069 201 0 43 chr12 132802346 132802398 -10984057 + L1MB5 LINE L1 5776 5829 -345 1869 136 14 0 chr12 132802399 132802686 -10983769 + AluSx SINE Alu 21 311 -1 25 0 0 28 chr12 132803507 132803523 -10982932 + AT_rich Low_complexity Low_complexity 1 16 -19 2497 68 0 3 chr12 132803523 132803833 -10982622 - AluY SINE Alu -2 309 1 25 0 0 28 chr12 132803833 132803852 -10982603 + AT_rich Low_complexity Low_complexity 16 35 0 2357 92 6 13 chr12 132803852 132804167 -10982288 - AluSq SINE Alu 0 313 1 844 192 32 46 chr12 132804186 132804405 -10982050 - MER20 DNA MER1_type -1 218 3 2114 115 28 0 chr12 132806007 132806293 -10980162 + AluSx SINE Alu 1 294 -18 811 91 9 0 chr12 132806299 132806409 -10980046 + FRAM SINE Alu 51 161 -15 196 259 59 35 chr12 132806589 132806674 -10979781 - MIR SINE MIR -70 138 52 1925 126 29 0 chr12 132807088 132807366 -10979089 - AluSx SINE Alu -20 292 7 2217 102 3 3 chr12 132807557 132807861 -10978594 - AluSg SINE Alu -6 304 1 2595 45 3 6 chr12 132808524 132808836 -10977619 + AluY SINE Alu 1 311 0 1882 152 24 14 chr12 132808997 132809286 -10977169 - AluSx SINE Alu -20 292 1 25 0 0 0 chr12 132809517 132809542 -10976913 + AT_rich Low_complexity Low_complexity 1 25 0 234 257 14 0 chr12 132809544 132809614 -10976841 - L1MEc LINE L1 -4482 1914 1844 2290 75 18 0 chr12 132809726 132810005 -10976450 + AluSp SINE Alu 12 295 -18 1687 98 0 85 chr12 132810008 132810314 -10976141 - L1PA14 LINE L1 -52 6109 5830 294 290 24 8 chr12 132810314 132810438 -10976017 - L1ME4a LINE L1 -187 5934 5809 1075 254 77 51 chr12 132810478 132810860 -10975595 + LTR16B LTR ERVL 1 398 -66 2341 102 0 0 chr12 132810860 132811164 -10975291 - AluSx SINE Alu -8 304 1 1075 254 77 51 chr12 132811164 132811233 -10975222 + LTR16B LTR ERVL 398 464 0 195 22 44 44 chr12 132811593 132811638 -10974817 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 1137 128 0 23 chr12 132811638 132811803 -10974652 - AluSg/x SINE Alu -29 281 119 2449 98 0 0 chr12 132811874 132812180 -10974275 - AluSg SINE Alu -4 306 1 2175 116 3 7 chr12 132812180 132812482 -10973973 - AluSg SINE Alu -8 302 2 2228 102 7 7 chr12 132812483 132812777 -10973678 - AluSg SINE Alu -15 295 2 2236 122 3 0 chr12 132812778 132813081 -10973374 - AluSx SINE Alu -8 304 1 1226 208 16 55 chr12 132813449 132813663 -10972792 + L1MB7 LINE L1 5820 6020 -164 809 132 16 0 chr12 132813663 132813792 -10972663 - FLAM_C SINE Alu -1 132 2 1226 208 16 55 chr12 132813792 132813889 -10972566 + L1MB7 LINE L1 6020 6119 -65 709 206 0 0 chr12 132813890 132814031 -10972424 + FLAM_C SINE Alu 2 142 -1 195 69 0 0 chr12 132814048 132814077 -10972378 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2129 111 7 0 chr12 132814077 132814356 -10972099 - AluSg SINE Alu -29 281 1 760 240 86 17 chr12 132814742 132814975 -10971480 - MIR SINE MIR 0 262 14 2620 51 0 6 chr12 132815059 132815372 -10971083 + AluY SINE Alu 1 311 0 1636 203 4 0 chr12 132815372 132815653 -10970802 - AluJo SINE Alu -30 282 1 2286 35 0 0 chr12 132815692 132815975 -10970480 - L1PA5 LINE L1 0 6154 5872 24 0 0 0 chr12 132815997 132816021 -10970434 + AT_rich Low_complexity Low_complexity 1 24 0 2481 248 45 5 chr12 132816733 132817361 -10969094 - MER82 DNA MER2_type 0 653 1 2017 130 10 7 chr12 132818105 132818398 -10968057 + AluSx SINE Alu 3 296 -16 1920 146 31 0 chr12 132819415 132819541 -10966914 + AluSx SINE Alu 1 122 -190 225 0 0 0 chr12 132819541 132819566 -10966889 + (CA)n Simple_repeat Simple_repeat 2 26 0 1920 146 31 0 chr12 132819566 132819727 -10966728 + AluSx SINE Alu 122 297 -15 24 0 0 0 chr12 132819733 132819757 -10966698 + AT_rich Low_complexity Low_complexity 1 24 0 740 227 39 25 chr12 132819798 132820001 -10966454 + L1MB5 LINE L1 5960 6165 -9 272 255 131 13 chr12 132820530 132820683 -10965772 - L1ME4a LINE L1 -103 6018 5848 2127 123 7 13 chr12 132820725 132821026 -10965429 + AluSx SINE Alu 1 299 -13 2288 86 4 0 chr12 132821028 132821336 -10965119 + AluSx SINE Alu 1 309 0 439 125 0 0 chr12 132821349 132821413 -10965042 - AluJ/FLAM SINE Alu -247 65 2 227 293 40 13 chr12 132821486 132821561 -10964894 - L1ME4a LINE L1 -521 5600 5524 753 192 37 98 chr12 132821702 132821882 -10964573 - MER58A DNA MER1_type -2208 212 45 2342 101 3 7 chr12 132821882 132822188 -10964267 + AluSq SINE Alu 1 305 -8 753 192 37 98 chr12 132822188 132822221 -10964234 - MER58A DNA MER1_type -2375 45 12 379 186 0 115 chr12 132822239 132822352 -10964103 + MER112 DNA MER1_type 4 103 -157 370 278 19 0 chr12 132822442 132822550 -10963905 + MER112 DNA MER1_type 140 249 -11 1135 160 23 36 chr12 132823701 132823920 -10962535 - AluJb SINE Alu -21 291 76 1561 154 60 21 chr12 132824087 132824372 -10962083 + AluJo SINE Alu 1 296 -16 2440 82 3 3 chr12 132824772 132825075 -10961380 + AluSq SINE Alu 1 303 -10 2274 126 0 0 chr12 132825418 132825720 -10960735 + AluSx SINE Alu 1 302 -10 1864 149 21 7 chr12 132825733 132826021 -10960434 + AluSg SINE Alu 1 292 -18 1829 117 4 0 chr12 132826021 132826268 -10960187 + AluSq SINE Alu 1 248 -65 649 232 0 0 chr12 132826430 132826568 -10959887 - FLAM_C SINE Alu -3 140 3 1543 210 22 114 chr12 132826744 132827054 -10959401 - L1M4c LINE L1 -4543 1841 1621 1992 136 28 0 chr12 132827054 132827340 -10959115 - AluSx SINE Alu -18 294 1 1543 210 22 114 chr12 132827340 132827676 -10958779 - L1M4c LINE L1 -4763 1621 1255 2140 114 31 3 chr12 132828285 132828574 -10957881 + AluSx SINE Alu 1 297 -15 2008 125 4 18 chr12 132828984 132829264 -10957191 - AluSq SINE Alu -37 276 1 2296 115 0 19 chr12 132829772 132830086 -10956369 - AluSq SINE Alu -5 308 1 1798 169 33 12 chr12 132830086 132830423 -10956032 - L1MB7 LINE L1 -22 6162 5819 2392 91 0 10 chr12 132830423 132830732 -10955723 - AluSq SINE Alu -7 306 1 718 62 21 0 chr12 132830782 132830878 -10955577 - AluSc SINE Alu -14 295 198 2388 89 0 0 chr12 132831078 132831381 -10955074 - AluY SINE Alu -8 303 1 1937 165 0 0 chr12 132831386 132831683 -10954772 - AluJo SINE Alu -15 297 1 258 273 0 15 chr12 132832382 132832448 -10954007 + GA-rich Low_complexity Low_complexity 5 69 0 1862 105 40 0 chr12 132833651 132833899 -10952556 + AluSq SINE Alu 1 258 -55 2189 202 85 5 chr12 132834010 132834609 -10951846 - Charlie1 DNA MER1_type -268 2493 1847 2115 113 3 0 chr12 132834609 132834900 -10951555 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr12 132836360 132836383 -10950072 + GC_rich Low_complexity Low_complexity 1 23 0 1799 120 51 0 chr12 132836566 132836842 -10949613 + AluJo SINE Alu 10 299 -13 231 313 111 34 chr12 132836989 132837197 -10949258 + L2 LINE L2 2997 3220 -52 2261 82 26 16 chr12 132840877 132841181 -10945274 + AluSx SINE Alu 1 307 -5 1893 141 10 24 chr12 132841181 132841478 -10944977 + AluSx SINE Alu 1 293 -19 239 305 42 34 chr12 132841566 132841684 -10944771 - L1M4 LINE L1 -1998 4148 4030 321 369 137 27 chr12 132841688 132842127 -10944328 - L1M4 LINE L1 -2140 4006 3520 2128 92 13 26 chr12 132842172 132842475 -10943980 - AluY SINE Alu -10 301 3 1378 170 120 40 chr12 132842768 132843044 -10943411 + AluJb SINE Alu 1 298 -14 1983 137 7 7 chr12 132843323 132843646 -10942809 + AluSx SINE Alu 1 312 0 944 172 46 17 chr12 132843709 132843883 -10942572 - AluSg/x SINE Alu -14 296 118 1676 150 69 4 chr12 132843955 132844229 -10942226 - AluJo SINE Alu -20 292 1 1626 125 89 53 chr12 132844237 132844518 -10941937 - AluSx SINE Alu -13 299 9 1293 145 186 8 chr12 132844567 132844815 -10941640 + AluSg1 SINE Alu 1 292 -17 2116 89 6 80 chr12 132844818 132845132 -10941323 + AluSq SINE Alu 1 291 -22 843 152 0 48 chr12 132845281 132845426 -10941029 + FLAM_C SINE Alu 6 143 0 227 350 17 43 chr12 132845440 132845557 -10940898 + MIR SINE MIR 56 169 -93 201 279 35 23 chr12 132845604 132845690 -10940765 + MIR3 SINE MIR 113 199 -9 2158 113 14 7 chr12 132846752 132847043 -10939412 + AluSx SINE Alu 1 293 -19 1589 191 13 23 chr12 132847043 132847342 -10939113 - AluJo SINE Alu -16 296 1 692 193 103 0 chr12 132847555 132847700 -10938755 - MER58B DNA MER1_type 0 341 182 2119 92 31 10 chr12 132848183 132848475 -10937980 + AluSg SINE Alu 1 298 -12 2525 79 0 0 chr12 132848477 132848781 -10937674 + AluSc SINE Alu 2 305 -4 1942 112 18 28 chr12 132849098 132849420 -10937035 + AluSq SINE Alu 1 319 0 553 133 41 0 chr12 132849815 132849913 -10936542 + L1MC4 LINE L1 7501 7602 -440 2337 112 0 0 chr12 132849913 132850209 -10936246 + AluSx SINE Alu 1 296 -16 2034 128 4 0 chr12 132850210 132850528 -10935927 + AluSq SINE Alu 1 319 0 245 278 216 17 chr12 132850760 132850936 -10935519 - MIR SINE MIR -44 218 8 1509 187 42 0 chr12 132851273 132851535 -10934920 - AluJo SINE Alu -39 273 1 930 232 153 90 chr12 132851989 132852158 -10934297 + L2 LINE L2 2277 2434 -879 1846 63 0 5 chr12 132852158 132852379 -10934076 + AluY SINE Alu 1 220 -91 323 42 0 0 chr12 132852379 132852427 -10934028 + AluY SINE Alu 254 301 0 930 232 153 90 chr12 132852427 132852445 -10934010 + L2 LINE L2 2434 2449 -864 2143 136 21 6 chr12 132852445 132852776 -10933679 - MER1B DNA MER1_type 0 337 2 930 232 153 90 chr12 132852776 132852990 -10933465 + L2 LINE L2 2449 2648 -665 2120 124 7 0 chr12 132852990 132853289 -10933166 + AluSx SINE Alu 1 301 -11 930 232 153 90 chr12 132853289 132853638 -10932817 + L2 LINE L2 2648 2974 -339 1880 147 31 0 chr12 132853638 132853930 -10932525 - AluJo SINE Alu -11 301 1 930 232 153 90 chr12 132853930 132854091 -10932364 + L2 LINE L2 2974 3311 -2 1785 105 6 68 chr12 132854659 132854812 -10931643 + AluJb SINE Alu 1 125 -187 2047 94 0 0 chr12 132854812 132855077 -10931378 + AluSx SINE Alu 44 308 -4 1785 105 6 68 chr12 132855077 132855248 -10931207 + AluJb SINE Alu 125 305 -7 199 75 0 75 chr12 132856206 132856259 -10930196 + (CGGGG)n Simple_repeat Simple_repeat 4 52 0 501 223 0 0 chr12 132858740 132858834 -10927621 + AluJ/FLAM SINE Alu 6 99 -213 1237 161 73 9 chr12 132858883 132859101 -10927354 + AluJo SINE Alu 61 292 -20 2162 103 11 7 chr12 132860137 132860446 -10926009 + AluSx SINE Alu 1 310 0 2336 116 0 0 chr12 132861613 132861923 -10924532 + AluSx SINE Alu 1 310 -2 2300 108 0 0 chr12 132863067 132863364 -10923091 - AluSx SINE Alu -15 297 1 605 220 54 87 chr12 132863375 132863652 -10922803 + L1MC4a LINE L1 5564 5831 -1977 1897 138 0 43 chr12 132864105 132864430 -10922025 - AluJb SINE Alu -1 311 1 430 265 177 56 chr12 132864449 132864827 -10921628 + LTR33 LTR ERVL 2 333 -188 1287 186 89 0 chr12 132864827 132865096 -10921359 - AluJo SINE Alu -19 293 1 2346 100 3 0 chr12 132865102 132865401 -10921054 - AluSx SINE Alu -12 300 1 430 265 177 56 chr12 132865401 132865479 -10920976 + LTR33 LTR ERVL 337 521 0 240 293 65 0 chr12 132866040 132866163 -10920292 + L1MC/D LINE L1 5768 5898 -1910 2099 122 21 0 chr12 132866197 132866485 -10919970 + AluSx SINE Alu 3 296 -16 727 247 110 23 chr12 132866490 132866709 -10919746 - MIR SINE MIR 0 262 25 656 261 22 11 chr12 132867113 132867293 -10919162 + MIR SINE MIR 4 185 -77 1892 24 0 0 chr12 132867366 132867576 -10918879 - AluYb8 SINE Alu -4 314 105 239 258 0 0 chr12 132867597 132867659 -10918796 + MIR SINE MIR 201 262 0 1223 158 48 10 chr12 132867705 132867914 -10918541 - AluJo SINE Alu -95 217 1 1893 130 53 17 chr12 132868041 132868340 -10918115 - AluSg SINE Alu 0 310 1 682 211 0 8 chr12 132868350 132868478 -10917977 - FLAM_A SINE Alu -6 127 1 2265 73 28 0 chr12 132868518 132868807 -10917648 - AluY SINE Alu -14 297 1 22 35 0 0 chr12 132868961 132868990 -10917465 + AT_rich Low_complexity Low_complexity 1 29 0 2166 104 7 0 chr12 132870216 132870545 -10915910 - AluSq SINE Alu 0 313 1 1947 155 10 0 chr12 132872294 132872585 -10913870 + AluJb SINE Alu 5 298 -14 589 139 0 0 chr12 132872640 132872726 -10913729 - AluS SINE Alu -226 87 2 2427 74 3 3 chr12 132872857 132873156 -10913299 + AluY SINE Alu 1 299 -12 2025 141 13 16 chr12 132874299 132874475 -10911980 - AluSx SINE Alu 0 312 136 2285 113 0 0 chr12 132874475 132874785 -10911670 - AluSg SINE Alu 0 310 1 2025 141 13 16 chr12 132874785 132874921 -10911534 - AluSx SINE Alu -176 136 1 2162 114 33 0 chr12 132875052 132875351 -10911104 - AluSp SINE Alu -4 309 1 1951 158 0 3 chr12 132876017 132876314 -10910141 - AluSx SINE Alu -16 296 1 294 295 93 14 chr12 132876910 132877049 -10909406 + MIR SINE MIR 63 212 -50 26 39 0 20 chr12 132877051 132877073 -10909382 + AT_rich Low_complexity Low_complexity 1 22 -28 2465 65 3 0 chr12 132877073 132877366 -10909089 + AluY SINE Alu 1 294 -17 26 39 0 20 chr12 132877366 132877394 -10909061 + AT_rich Low_complexity Low_complexity 22 50 0 180 219 0 0 chr12 132877656 132877697 -10908758 + (TA)n Simple_repeat Simple_repeat 1 41 0 430 265 93 6 chr12 132880049 132880211 -10906244 - MIR SINE MIR -1 261 86 21 0 0 0 chr12 132881224 132881245 -10905210 + AT_rich Low_complexity Low_complexity 1 21 0 254 232 123 39 chr12 132881386 132881489 -10904966 - MIR SINE MIR -42 220 98 2509 88 0 0 chr12 132881489 132881797 -10904658 + AluSg1 SINE Alu 1 308 -1 254 232 123 39 chr12 132881797 132881848 -10904607 - MIR SINE MIR -164 98 53 3126 94 20 26 chr12 132882467 132882728 -10903727 - MLT2A2 LTR ERVL 0 453 195 1798 138 53 3 chr12 132882728 132883010 -10903445 - AluSx SINE Alu -16 296 1 3126 94 20 26 chr12 132883010 132883204 -10903251 - MLT2A2 LTR ERVL -258 195 1 898 130 0 14 chr12 132883353 132883491 -10902964 - FRAM SINE Alu -20 156 21 2166 112 3 3 chr12 132884135 132884429 -10902026 + AluSx SINE Alu 1 294 -18 676 157 8 25 chr12 132885766 132885887 -10900568 + FLAM_C SINE Alu 2 120 -23 1965 144 3 0 chr12 132885901 132886185 -10900270 + AluSx SINE Alu 1 285 -27 1023 269 56 58 chr12 132886316 132886402 -10900053 + HAL1b LINE L1 280 365 -983 2096 114 13 3 chr12 132886402 132886701 -10899754 + AluSp SINE Alu 5 306 -7 1023 269 56 58 chr12 132886701 132887094 -10899361 + HAL1b LINE L1 365 758 -590 2087 117 0 17 chr12 132887110 132887409 -10899046 - AluSg SINE Alu -16 294 1 1873 196 62 34 chr12 132887427 132887940 -10898515 - L1MC4 LINE L1 -1 7807 7278 1025 63 16 0 chr12 132888101 132888228 -10898227 + AluSg/x SINE Alu 167 295 -15 244 227 69 71 chr12 132888318 132888511 -10897944 + HAL1b LINE L1 982 1174 -174 1622 174 13 45 chr12 132888511 132888822 -10897633 - AluJo SINE Alu -11 301 1 244 227 69 71 chr12 132888822 132888863 -10897592 + HAL1b LINE L1 1174 1214 -134 2591 57 0 0 chr12 132888863 132889162 -10897293 - AluY SINE Alu -11 300 2 244 227 69 71 chr12 132889162 132889233 -10897222 + HAL1b LINE L1 1214 1346 -2 24 32 0 0 chr12 132889234 132889265 -10897190 + AT_rich Low_complexity Low_complexity 1 31 0 1946 133 10 17 chr12 132889826 132890127 -10896328 - AluSx SINE Alu -13 299 1 1794 142 48 7 chr12 132890180 132890469 -10895986 - AluSx SINE Alu -9 303 3 1059 297 64 7 chr12 132890589 132891010 -10895445 - LTR16A LTR ERVL 0 450 6 208 350 50 0 chr12 132891349 132891429 -10895026 - L2 LINE L2 0 3313 3230 1007 180 12 0 chr12 132891913 132892080 -10894375 - FRAM SINE Alu -8 168 1 29 90 0 0 chr12 132892135 132892213 -10894242 + AT_rich Low_complexity Low_complexity 1 78 0 285 289 69 25 chr12 132892420 132892436 -10894019 - L1MA10 LINE L1 0 6334 6319 972 221 107 4 chr12 132892436 132892680 -10893775 - L1ME1 LINE L1 -5 6161 5893 * 2924 224 27 7 chr12 132892675 132893390 -10893065 + L1M4 LINE L1 2128 2856 -3290 1799 121 8 19 chr12 132893410 132893674 -10892781 - AluSx SINE Alu -15 297 37 29 28 0 0 chr12 132893688 132893724 -10892731 + AT_rich Low_complexity Low_complexity 1 36 0 2044 118 3 30 chr12 132893724 132894029 -10892426 - AluSg SINE Alu -13 297 1 1491 187 92 3 chr12 132894032 132894316 -10892139 - AluJo SINE Alu -3 309 1 332 212 0 0 chr12 132894318 132894384 -10892071 - L1ME1 LINE L1 -279 5887 5822 2095 75 3 20 chr12 132894441 132894733 -10891722 - AluY SINE Alu -3 308 22 1918 167 3 0 chr12 132895105 132895399 -10891056 + AluSx SINE Alu 1 295 -17 2310 102 3 0 chr12 132895402 132895706 -10890749 + AluSq SINE Alu 1 305 -8 1638 192 10 3 chr12 132896086 132896394 -10890061 + AluJo SINE Alu 1 310 -2 2234 123 0 0 chr12 132896878 132897178 -10889277 - AluSq SINE Alu -13 300 1 1592 102 14 5 chr12 132897263 132897478 -10888977 - AluSg/x SINE Alu -15 297 81 180 0 0 0 chr12 132897478 132897498 -10888957 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 132897719 132897742 -10888713 + AT_rich Low_complexity Low_complexity 1 23 0 2119 118 27 3 chr12 132898435 132898731 -10887724 + AluSg SINE Alu 1 303 -7 1093 171 13 43 chr12 132899552 132899735 -10886720 - AluJo SINE Alu 0 312 136 2320 92 0 0 chr12 132899735 132900041 -10886414 - AluY SINE Alu -5 306 1 1093 171 13 43 chr12 132900041 132900091 -10886364 - AluJo SINE Alu -176 136 86 2373 96 0 13 chr12 132900207 132900521 -10885934 - AluSg SINE Alu 0 310 1 21 82 0 0 chr12 132900853 132900902 -10885553 + AT_rich Low_complexity Low_complexity 1 49 0 1194 197 0 14 chr12 132900981 132901204 -10885251 + AluJo SINE Alu 1 220 -92 2368 89 0 23 chr12 132901226 132901529 -10884926 + AluSc SINE Alu 1 296 -13 1077 175 0 0 chr12 132901643 132901814 -10884641 + FAM SINE Alu 1 171 -4 185 350 50 25 chr12 132901820 132901940 -10884515 - MIR3 SINE MIR -73 135 13 22 0 0 0 chr12 132901953 132901975 -10884480 + AT_rich Low_complexity Low_complexity 1 22 0 2447 85 3 0 chr12 132902106 132902413 -10884042 + AluSq SINE Alu 1 308 -5 2263 94 44 0 chr12 132903012 132903309 -10883146 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr12 132903951 132903980 -10882475 + AT_rich Low_complexity Low_complexity 1 29 0 213 196 0 0 chr12 132904063 132904109 -10882346 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1544 154 0 85 chr12 132905032 132905351 -10881104 - AluJo SINE Alu -20 292 1 1514 202 21 3 chr12 132906014 132906351 -10880104 - L1MD3 LINE L1 -2 7993 7651 2305 62 10 10 chr12 132906391 132906680 -10879775 + AluSx SINE Alu 14 302 -10 766 230 94 38 chr12 132908885 132909172 -10877283 - L1MC4a LINE L1 -1900 5908 5606 854 147 23 0 chr12 132909271 132909400 -10877055 + FLAM_C SINE Alu 1 132 -1 254 146 0 0 chr12 132909421 132909462 -10876993 + Alu SINE Alu 249 289 -13 1651 199 10 3 chr12 132909495 132909787 -10876668 + AluJo SINE Alu 1 294 -18 482 163 87 0 chr12 132909802 132909894 -10876561 + AluJ/FLAM SINE Alu 3 102 -210 316 137 0 0 chr12 132909894 132909945 -10876510 + Alu SINE Alu 246 296 -6 207 0 0 0 chr12 132910347 132910370 -10876085 + (TG)n Simple_repeat Simple_repeat 1 23 0 183 129 0 0 chr12 132910614 132910645 -10875810 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 399 41 0 0 chr12 132911076 132911125 -10875330 + (TG)n Simple_repeat Simple_repeat 2 50 0 2208 118 0 0 chr12 132911126 132911422 -10875033 - AluSx SINE Alu -16 296 1 2277 105 0 0 chr12 132911601 132911895 -10874560 + AluSg SINE Alu 1 294 -16 2193 106 0 0 chr12 132911911 132912223 -10874232 + AluSx SINE Alu 1 312 0 31 0 0 0 chr12 132912265 132912296 -10874159 + AT_rich Low_complexity Low_complexity 1 31 0 2054 112 0 4 chr12 132912740 132913009 -10873446 + AluSx SINE Alu 23 290 -22 1985 144 3 3 chr12 132913206 132913497 -10872958 + AluSx SINE Alu 6 296 -16 1104 171 0 17 chr12 132915309 132915490 -10870965 - AluJo/FRAM SINE Alu -1 311 134 2484 85 3 0 chr12 132915490 132915795 -10870660 - AluY SINE Alu -5 306 1 932 167 0 0 chr12 132915810 132915972 -10870483 + L1MD3 LINE L1 7103 7264 -731 616 197 8 0 chr12 132915977 132916094 -10870361 + MLT1F1 LTR MaLR 2 119 -448 1879 209 36 15 chr12 132916170 132916638 -10869817 + L1MD3 LINE L1 7498 7975 -20 654 165 9 0 chr12 132916641 132916750 -10869705 + FLAM_C SINE Alu 2 111 -32 1422 127 36 5 chr12 132916772 132916992 -10869463 - AluSq SINE Alu -15 298 72 1230 95 0 16 chr12 132917226 132917415 -10869040 - L1PA5 LINE L1 -97 6057 5872 24 0 0 0 chr12 132917437 132917461 -10868994 + AT_rich Low_complexity Low_complexity 1 24 0 2635 250 45 5 chr12 132918170 132918798 -10867657 - MER82 DNA MER2_type 0 653 1 2008 130 10 7 chr12 132919543 132919836 -10866619 + AluSx SINE Alu 3 296 -16 29 0 0 0 chr12 132919947 132919976 -10866479 + AT_rich Low_complexity Low_complexity 1 29 0 2041 124 31 0 chr12 132920854 132920980 -10865475 + AluSx SINE Alu 1 122 -190 225 0 0 0 chr12 132920980 132921005 -10865450 + (CA)n Simple_repeat Simple_repeat 2 26 0 2041 124 31 0 chr12 132921005 132921168 -10865287 + AluSx SINE Alu 122 299 -13 2167 105 0 3 chr12 132921181 132921494 -10864961 + AluSx SINE Alu 1 312 0 31 0 0 0 chr12 132921536 132921567 -10864888 + AT_rich Low_complexity Low_complexity 1 31 0 2072 112 0 4 chr12 132922011 132922280 -10864175 + AluSx SINE Alu 23 290 -22 1985 144 3 3 chr12 132922477 132922768 -10863687 + AluSx SINE Alu 6 296 -16 1311 213 22 15 chr12 132925094 132925367 -10861088 - AluJb SINE Alu -37 275 1 352 89 18 0 chr12 132925416 132925472 -10860983 - LTR37B LTR ERV1 -405 63 7 2503 60 7 0 chr12 132925610 132925908 -10860547 + AluY SINE Alu 1 300 -11 201 281 53 0 chr12 132926007 132926064 -10860391 + MIR SINE MIR 85 144 -64 919 192 6 16 chr12 132926092 132926274 -10860181 - MER5A DNA MER1_type -1 188 9 405 277 26 35 chr12 132926457 132926614 -10859841 + MIR SINE MIR 13 165 -43 186 326 41 0 chr12 132926598 132926647 -10859808 + L2 LINE L2 3211 3261 -11 * 1204 129 96 62 chr12 132926654 132926894 -10859561 - AluJo SINE Alu -37 275 28 905 119 0 22 chr12 132926994 132927128 -10859327 - FLAM_C SINE Alu -1 132 2 205 316 66 0 chr12 132928105 132928181 -10858274 - MIR SINE MIR -69 193 113 2459 91 0 0 chr12 132928662 132928959 -10857496 + AluSx SINE Alu 1 297 -15 2203 101 24 20 chr12 132930098 132930395 -10856060 - AluSx SINE Alu -9 303 6 2139 107 7 0 chr12 132930415 132930726 -10855729 - AluSg SINE Alu 0 313 1 1120 176 0 0 chr12 132930753 132930923 -10855532 - AluJb SINE Alu -1 311 142 2474 80 0 0 chr12 132930926 132931227 -10855228 - AluSq SINE Alu -12 301 1 632 324 130 17 chr12 132931240 132931765 -10854690 - L2 LINE L2 -24 3289 2702 492 147 0 0 chr12 132931818 132931886 -10854569 - AluJ/FLAM SINE Alu -243 69 2 1510 128 0 0 chr12 132931919 132932122 -10854333 - AluSg/x SINE Alu -16 296 94 771 182 105 69 chr12 132932353 132932737 -10853718 + MLT1E3 LTR MaLR 60 429 -195 378 0 0 0 chr12 132932737 132932779 -10853676 + (TG)n Simple_repeat Simple_repeat 2 43 0 1867 155 11 0 chr12 132932784 132933062 -10853393 - AluJb SINE Alu -31 281 1 771 182 105 69 chr12 132933062 132933073 -10853382 + MLT1E3 LTR MaLR 432 441 -183 2132 129 0 0 chr12 132933073 132933398 -10853057 - AluSx SINE Alu 0 325 1 771 182 105 69 chr12 132933398 132933461 -10852994 + MLT1E3 LTR MaLR 441 624 0 221 296 12 12 chr12 132933494 132933575 -10852880 + L2 LINE L2 1933 2013 -1301 210 283 0 0 chr12 132933696 132933749 -10852706 + L2 LINE L2 2304 2356 -958 * 716 321 61 76 chr12 132933741 132933840 -10852615 - L2 LINE L2 -711 2603 2504 1903 132 0 52 chr12 132933840 132934167 -10852288 - AluSg SINE Alu 0 310 1 716 321 61 76 chr12 132934167 132934358 -10852097 - L2 LINE L2 -810 2504 2312 1650 182 3 42 chr12 132934358 132934665 -10851790 - AluJo SINE Alu -17 295 1 716 321 61 76 chr12 132934665 132934951 -10851504 - L2 LINE L2 -1002 2312 2023 2447 84 7 7 chr12 132934951 132935260 -10851195 + AluSc SINE Alu 1 309 0 716 321 61 76 chr12 132935260 132935496 -10850959 - L2 LINE L2 -1291 2023 1802 2410 85 3 3 chr12 132935496 132935802 -10850653 + AluSq SINE Alu 1 306 -7 716 321 61 76 chr12 132935802 132935890 -10850565 - L2 LINE L2 -1512 1802 1714 306 301 73 0 chr12 132935944 132936080 -10850375 + L2 LINE L2 2248 2393 -921 307 123 0 0 chr12 132936137 132936194 -10850261 - L1MC4a LINE L1 -808 7000 6944 1970 152 0 7 chr12 132936194 132936490 -10849965 + AluJb SINE Alu 1 294 -18 2411 86 0 10 chr12 132936522 132936835 -10849620 + AluY SINE Alu 1 310 -1 926 189 13 0 chr12 132936835 132936994 -10849461 + AluSg/x SINE Alu 134 294 -18 1027 131 71 6 chr12 132937248 132937416 -10849039 - AluJo SINE Alu -30 282 104 1180 229 31 77 chr12 132937599 132937765 -10848690 - L1M4 LINE L1 -1812 4334 4162 2157 143 0 6 chr12 132937765 132938080 -10848375 - AluSq SINE Alu 0 313 1 1921 137 14 3 chr12 132938082 132938396 -10848059 - AluSx SINE Alu 0 312 1 1180 229 31 77 chr12 132938396 132938640 -10847815 - L1M4 LINE L1 -1985 4161 3940 314 224 24 24 chr12 132938743 132938828 -10847627 + MIR SINE MIR 89 173 -89 2089 119 0 39 chr12 132939339 132939651 -10846804 + AluSq SINE Alu 1 300 -13 943 84 7 9 chr12 132939651 132939932 -10846523 + AluSx SINE Alu 2 333 0 809 196 0 0 chr12 132939945 132940078 -10846377 + FLAM_C SINE Alu 1 133 0 2275 95 0 10 chr12 132940414 132940718 -10845737 + AluSg SINE Alu 1 301 -9 2112 104 66 0 chr12 132940728 132941016 -10845439 + AluSc SINE Alu 1 307 -2 190 292 0 0 chr12 132941059 132941107 -10845348 - MIR SINE MIR -102 160 113 659 322 143 23 chr12 132941134 132941292 -10845163 - L2 LINE L2 -493 2821 2683 1969 144 0 0 chr12 132941292 132941601 -10844854 + AluSx SINE Alu 1 309 0 659 322 143 23 chr12 132941601 132941679 -10844776 - L2 LINE L2 -631 2683 2616 1969 180 91 0 chr12 132941679 132942041 -10844414 - MER47B DNA MER2_type -1905 418 18 2211 108 0 26 chr12 132942041 132942346 -10844109 + AluSx SINE Alu 2 298 -14 1969 180 91 0 chr12 132942346 132942366 -10844089 - MER47B DNA MER2_type -2305 18 1 659 322 143 23 chr12 132942366 132942525 -10843930 - L2 LINE L2 -698 2616 2376 1972 136 7 14 chr12 132942967 132943126 -10843329 - AluSx SINE Alu -19 293 135 2404 89 7 0 chr12 132943126 132943429 -10843026 - AluSp SINE Alu -7 306 2 1972 136 7 14 chr12 132943429 132943564 -10842891 - AluSx SINE Alu -177 135 1 1143 159 0 6 chr12 132943565 132943735 -10842720 - AluSg/x SINE Alu -16 294 126 2500 75 0 3 chr12 132943740 132944046 -10842409 - AluSx SINE Alu -7 305 1 2113 133 0 10 chr12 132944649 132944950 -10841505 + AluSx SINE Alu 1 298 -14 525 198 63 63 chr12 132944950 132945148 -10841307 + L1MC5 LINE L1 7725 7925 -36 224 291 230 18 chr12 132945836 132946166 -10840289 - L2 LINE L2 -519 2795 2396 252 184 0 0 chr12 132948240 132948289 -10838166 + (CA)n Simple_repeat Simple_repeat 2 50 0 2290 115 0 3 chr12 132949984 132950288 -10836167 - AluSx SINE Alu -1 311 9 1747 162 31 10 chr12 132950300 132950590 -10835865 - AluJo SINE Alu -16 296 1 730 193 0 15 chr12 132952197 132952332 -10834123 + FLAM_A SINE Alu 1 133 0 2484 71 0 6 chr12 132952335 132952646 -10833809 + AluY SINE Alu 1 309 -2 282 226 289 14 chr12 132952681 132952889 -10833566 + HAL1 LINE L1 1429 1693 -814 776 187 0 15 chr12 132953126 132953260 -10833195 + AluSq/x SINE Alu 2 133 -179 1274 173 111 33 chr12 132953573 132953844 -10832611 - AluJo SINE Alu -20 292 1 1688 172 10 10 chr12 132953853 132954150 -10832305 - AluJb SINE Alu -15 297 1 785 136 24 8 chr12 132954284 132954409 -10832046 + AluSg/x SINE Alu 166 292 -18 2195 87 23 23 chr12 132954412 132954711 -10831744 + AluY SINE Alu 1 299 -12 2436 200 67 31 chr12 132954727 132955153 -10831302 + L1MB7 LINE L1 5494 5950 -234 2117 125 10 0 chr12 132955153 132955450 -10831005 + AluSx SINE Alu 1 300 -12 2436 200 67 31 chr12 132955450 132955633 -10830822 + L1MB7 LINE L1 5950 6125 -59 201 263 168 42 chr12 132955650 132955745 -10830710 - MIR SINE MIR -150 112 6 318 215 0 15 chr12 132956197 132956262 -10830193 - L1ME4a LINE L1 -9 6112 6049 1869 109 0 4 chr12 132956267 132956514 -10829941 + AluSq SINE Alu 1 246 -67 352 89 0 0 chr12 132956638 132956694 -10829761 - L1PA14 LINE L1 0 6161 6106 469 168 10 30 chr12 132956699 132956800 -10829655 + MSTA LTR MaLR 1 99 -329 2238 105 3 23 chr12 132956934 132957240 -10829215 + AluSx SINE Alu 4 303 -9 563 219 49 0 chr12 132957240 132957363 -10829092 - MER3 DNA MER1_type -80 129 1 641 237 24 100 chr12 132957391 132957720 -10828735 + LTR37B LTR ERV1 114 417 -51 274 287 158 0 chr12 132957781 132957882 -10828573 + LTR67 LTR ERVL 108 224 -333 542 221 8 8 chr12 132958076 132958207 -10828248 - L1M4 LINE L1 -986 5160 5030 994 97 15 0 chr12 132958207 132958341 -10828114 - AluJo SINE Alu -176 136 1 1477 196 6 33 chr12 132958341 132958672 -10827783 - L1M4 LINE L1 -1115 5031 4710 1492 130 0 5 chr12 132958765 132958973 -10827482 - AluSg/x SINE Alu -19 291 85 2287 118 3 0 chr12 132958999 132959303 -10827152 - AluSx SINE Alu -7 305 1 1870 135 0 4 chr12 132959652 132959918 -10826537 - AluSx SINE Alu -14 298 34 772 182 0 0 chr12 132960351 132960483 -10825972 - AluSg/x SINE Alu -15 297 166 378 371 0 0 chr12 132960552 132960692 -10825763 + C-rich Low_complexity Low_complexity 1 140 0 24 0 0 0 chr12 132960714 132960738 -10825717 + GC_rich Low_complexity Low_complexity 1 24 0 287 313 0 0 chr12 132960875 132961038 -10825417 + C-rich Low_complexity Low_complexity 1 163 0 22 0 0 0 chr12 132961108 132961130 -10825325 + GC_rich Low_complexity Low_complexity 1 22 0 236 170 106 0 chr12 132961275 132961322 -10825133 - AluSx SINE Alu -249 52 1 2151 118 7 3 chr12 132961386 132961692 -10824763 + AluSx SINE Alu 1 307 -5 312 271 98 15 chr12 132961824 132961957 -10824498 + L1MC4 LINE L1 7898 8041 -1 1216 210 17 21 chr12 132962040 132962331 -10824124 + AluSq SINE Alu 1 290 -23 290 143 0 0 chr12 132962445 132962487 -10823968 - Alu SINE Alu -257 42 1 1792 161 4 4 chr12 132962563 132962842 -10823613 + AluSx SINE Alu 1 279 -33 299 270 24 32 chr12 132962967 132963093 -10823362 - MER45A DNA AcHobo -53 125 1 204 316 13 45 chr12 133163669 133163824 -10622631 + GA-rich Low_complexity Low_complexity 1 150 0 * 324 404 0 0 chr12 133163762 133163918 -10622537 + G-rich Low_complexity Low_complexity 1 156 0 244 364 0 43 chr12 133163886 133164073 -10622382 + GA-rich Low_complexity Low_complexity 1 179 0 * 1255 149 8 46 chr12 133164118 133164285 -10622170 + Tigger5 DNA MER2_type 2088 2245 -78 1764 184 14 3 chr12 133164285 133164578 -10621877 - AluJb SINE Alu -16 296 1 1255 149 8 46 chr12 133164578 133164651 -10621804 + Tigger5 DNA MER2_type 2245 2319 -4 1074 243 118 9 chr12 133164656 133165002 -10621453 - L2 LINE L2 -465 2849 2466 1938 144 17 10 chr12 133165196 133165495 -10620960 + AluJb SINE Alu 1 301 -11 2276 115 0 0 chr12 133165901 133166197 -10620258 + AluSg SINE Alu 1 296 -14 1369 52 0 0 chr12 133166895 133167048 -10619407 + AluY SINE Alu 1 153 -158 917 145 0 0 chr12 133167508 133167632 -10618823 + FLAM_C SINE Alu 1 124 -19 1853 150 33 0 chr12 133167655 133167963 -10618492 + AluSx SINE Alu 1 317 0 24 0 0 0 chr12 133167996 133168020 -10618435 + AT_rich Low_complexity Low_complexity 1 24 0 2288 92 0 14 chr12 133168145 133168439 -10618016 - AluSc SINE Alu -19 290 1 1739 167 17 28 chr12 133168445 133168804 -10617651 - L1MB7 LINE L1 -19 6165 5811 227 75 0 0 chr12 133168804 133168844 -10617611 - L1MB4 LINE L1 -10 6170 6131 2028 123 32 3 chr12 133168844 133169129 -10617326 - AluJo SINE Alu -19 293 1 452 196 11 0 chr12 133169130 133169222 -10617233 - L1MB1 LINE L1 -343 5825 5733 2332 128 0 0 chr12 133169372 133169684 -10616771 - AluSx SINE Alu 0 312 1 2189 121 14 0 chr12 133170382 133170679 -10615776 - AluY SINE Alu -10 301 1 2352 92 0 3 chr12 133170981 133171275 -10615180 - AluY SINE Alu -18 293 1 2028 178 7 36 chr12 133171344 133171438 -10615017 + L1MB1 LINE L1 5743 5838 -330 844 170 82 0 chr12 133171438 133171597 -10614858 + FAM SINE Alu 4 175 0 2028 178 7 36 chr12 133171597 133171940 -10614515 + L1MB1 LINE L1 5838 6167 -1 315 260 236 0 chr12 133172387 133172514 -10613941 - MIR SINE MIR -70 192 36 1944 112 8 0 chr12 133172961 133173220 -10613235 + AluY SINE Alu 30 290 -21 710 100 10 0 chr12 133173315 133173415 -10613040 + AluS SINE Alu 2 102 -211 273 29 0 0 chr12 133173469 133173503 -10612952 + (TG)n Simple_repeat Simple_repeat 2 35 0 373 331 14 14 chr12 133173822 133173964 -10612491 - MIR3 SINE MIR -62 146 5 2346 161 7 80 chr12 133174073 133174612 -10611843 + L1MB4 LINE L1 5493 5992 -188 405 125 16 0 chr12 133174714 133174778 -10611677 - AluJ/FLAM SINE Alu -237 65 1 346 306 141 44 chr12 133174796 133174872 -10611583 - L1ME3A LINE L1 -204 5966 5899 2011 144 0 36 chr12 133174872 133175038 -10611417 - AluJb SINE Alu -17 295 143 2176 122 0 7 chr12 133175038 133175332 -10611123 - AluSg SINE Alu -18 292 1 2011 144 0 36 chr12 133175332 133175471 -10610984 - AluJb SINE Alu -169 143 1 346 306 141 44 chr12 133175471 133175600 -10610855 - L1ME3A LINE L1 -271 5899 5741 473 298 120 11 chr12 133175635 133176011 -10610444 - L1ME3A LINE L1 -497 5673 5257 2216 105 7 3 chr12 133176061 133176355 -10610100 + AluSx SINE Alu 1 295 -17 1286 194 73 67 chr12 133176590 133176962 -10609493 - MLT1A2 LTR MaLR 0 374 1 1857 124 6 92 chr12 133177431 133177769 -10608686 - AluSq SINE Alu -4 309 1 200 143 71 0 chr12 133178335 133178377 -10608078 + T-rich Low_complexity Low_complexity 4 48 0 206 311 22 11 chr12 133178595 133178685 -10607770 + L2 LINE L2 3222 3312 -1 1855 134 4 4 chr12 133180190 133180452 -10606003 + AluSx SINE Alu 4 265 -47 369 132 15 0 chr12 133180860 133180928 -10605527 + L1MC4 LINE L1 7519 7587 -455 436 205 0 0 chr12 133181021 133181104 -10605351 + AluJ/FLAM SINE Alu 1 83 -229 23 0 0 0 chr12 133181593 133181616 -10604839 + GC_rich Low_complexity Low_complexity 1 23 0 5357 48 3 4 chr12 133182352 133183054 -10603401 + L1PA4 LINE L1 5453 6153 -2 1679 207 80 5 chr12 133183057 133183483 -10602972 - L1P LINE L1 -4004 2142 1685 2927 242 44 26 chr12 133183629 133184702 -10601753 + L1M4 LINE L1 2656 3747 -2399 304 253 68 55 chr12 133185810 133185956 -10600499 + MER65A LTR ERV1 298 445 0 229 264 86 102 chr12 133186362 133186581 -10599874 + L2 LINE L2 1051 1265 -2049 2601 56 0 3 chr12 133186581 133186885 -10599570 - AluY SINE Alu -8 303 1 229 264 86 102 chr12 133186885 133186980 -10599475 + L2 LINE L2 1265 1360 -1954 2422 77 0 10 chr12 133187133 133187430 -10599025 - AluY SINE Alu -17 294 1 1564 153 29 67 chr12 133187673 133187986 -10598469 + AluJb SINE Alu 3 303 -9 2081 136 3 3 chr12 133187993 133188295 -10598160 + AluSg SINE Alu 1 302 -8 2113 114 7 7 chr12 133188375 133188665 -10597790 + AluSq SINE Alu 1 290 -23 730 157 16 0 chr12 133188676 133188797 -10597658 + FLAM_A SINE Alu 1 123 -10 2742 39 0 7 chr12 133188808 133189118 -10597337 + AluY SINE Alu 1 308 -3 563 244 89 17 chr12 133190365 133190545 -10595910 + MLT1D LTR MaLR 1 193 -312 2269 121 3 0 chr12 133190548 133190846 -10595609 + AluSx SINE Alu 1 299 -13 2172 95 27 10 chr12 133192773 133193069 -10593386 - AluSg SINE Alu -9 301 1 386 313 28 14 chr12 133193073 133193217 -10593238 + L2 LINE L2 3168 3313 0 210 323 75 0 chr12 133193268 133193361 -10593094 - MIR SINE MIR -118 144 45 2271 131 0 0 chr12 133193373 133193685 -10592770 - AluSx SINE Alu 0 312 1 2313 117 0 3 chr12 133193685 133193985 -10592470 - AluSx SINE Alu -13 299 1 2261 114 0 13 chr12 133193988 133194296 -10592159 - AluSx SINE Alu 0 312 9 451 266 32 142 chr12 133194812 133195255 -10591200 + L1MC/D LINE L1 5380 5773 -2035 1780 174 3 10 chr12 133195255 133195553 -10590902 - AluJo SINE Alu -16 296 1 568 148 0 102 chr12 133195588 133195642 -10590813 - L1MB5 LINE L1 -8 6166 6131 2128 90 42 17 chr12 133195642 133195931 -10590524 + AluSg SINE Alu 1 296 -14 568 148 0 102 chr12 133195931 133196004 -10590451 - L1MB5 LINE L1 -43 6131 6052 27 29 0 0 chr12 133196008 133196042 -10590413 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chr12 133196069 133196115 -10590340 + AT_rich Low_complexity Low_complexity 1 46 0 1420 167 35 3 chr12 133196115 133196323 -10590132 - L1MA8 LINE L1 -2 6289 6068 2103 126 7 13 chr12 133196323 133196632 -10589823 + AluSx SINE Alu 1 307 -5 1420 167 35 3 chr12 133196632 133196710 -10589745 - L1MA8 LINE L1 -223 6068 5994 861 131 23 10 chr12 133196774 133197034 -10589421 + AluJ SINE Alu 1 312 0 419 329 70 18 chr12 133197066 133197294 -10589161 - L1MC4a LINE L1 -1754 6054 5815 1122 176 11 6 chr12 133197408 133197626 -10588829 + AluSg/x SINE Alu 102 320 0 759 169 0 0 chr12 133197627 133197745 -10588710 - AluJo/FLAM SINE Alu -184 118 1 500 184 0 0 chr12 133198593 133198680 -10587775 + MIR SINE MIR 62 148 -114 438 288 58 7 chr12 133198702 133198841 -10587614 - L2 LINE L2 -1 3312 3167 999 84 8 8 chr12 133198843 133198974 -10587481 + AluSq/x SINE Alu 14 144 -168 225 53 0 0 chr12 133198974 133199012 -10587443 + Alu SINE Alu 262 299 -2 1331 180 57 12 chr12 133199034 133199116 -10587339 + AluJo SINE Alu 39 116 -196 240 35 0 0 chr12 133199116 133199145 -10587310 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1331 180 57 12 chr12 133199145 133199307 -10587148 + AluJo SINE Alu 116 294 -18 455 229 53 107 chr12 133199328 133199414 -10587041 - L2 LINE L2 -176 3137 3048 2041 129 3 16 chr12 133199414 133199725 -10586730 - AluSx SINE Alu -5 307 1 455 229 53 107 chr12 133199725 133199900 -10586555 - L2 LINE L2 -265 3048 2890 209 250 33 33 chr12 133200006 133200066 -10586389 + MIR3 SINE MIR 102 161 -47 335 319 44 0 chr12 133200738 133200873 -10585582 - MIR SINE MIR -80 182 42 821 279 8 33 chr12 133200973 133201213 -10585242 - MIR SINE MIR -22 240 7 1833 127 7 22 chr12 133201245 133201520 -10584935 + AluSx SINE Alu 1 271 -41 772 204 50 82 chr12 133201636 133201856 -10584599 - MIR SINE MIR -33 229 17 354 246 31 31 chr12 133202610 133202740 -10583715 - MIR SINE MIR -62 146 17 591 304 53 26 chr12 133205124 133205351 -10581104 - L2 LINE L2 0 3313 3081 292 301 107 26 chr12 133205358 133205704 -10580751 - L2 LINE L2 -36 3277 2812 2051 130 39 0 chr12 133205738 133206022 -10580433 - AluSx SINE Alu -17 295 1 626 238 0 0 chr12 133206199 133206325 -10580130 - FLAM_A SINE Alu -7 126 1 220 250 241 0 chr12 133206671 133206779 -10579676 - L2 LINE L2 -1 3271 3138 712 161 0 0 chr12 133206798 133206910 -10579545 - FLAM_C SINE Alu -30 113 2 2130 142 3 0 chr12 133206931 133207241 -10579214 - AluSq SINE Alu -2 311 1 514 307 67 0 chr12 133207418 133207597 -10578858 - MIR SINE MIR -15 247 57 2226 124 3 13 chr12 133207734 133208049 -10578406 - AluSx SINE Alu 0 312 1 1084 82 0 7 chr12 133208052 133208187 -10578268 - AluSq/x SINE Alu -178 134 1 202 365 21 28 chr12 133208204 133208269 -10578186 - MIR SINE MIR -1 261 197 1743 179 13 10 chr12 133208269 133208571 -10577884 - AluJo SINE Alu -9 303 1 202 365 21 28 chr12 133208571 133208650 -10577805 - MIR SINE MIR -65 197 118 2203 110 0 0 chr12 133208801 133209082 -10577373 - AluSx SINE Alu -31 281 1 4886 168 43 62 chr12 133209082 133210390 -10576065 - L1M3 LINE L1 -739 5441 4173 2005 136 7 0 chr12 133210390 133210702 -10575753 - AluSx SINE Alu 0 316 3 4886 168 43 62 chr12 133210702 133210824 -10575631 - L1M3 LINE L1 -2007 4173 4050 209 186 23 0 chr12 133211656 133211699 -10574756 + L3 LINE CR1 1519 1562 -15 629 241 46 20 chr12 133212905 133213100 -10573355 - Charlie8 DNA MER1_type -2217 200 1 1348 241 71 18 chr12 133213212 133213648 -10572807 - MLT1C LTR MaLR -8 459 1 531 150 200 0 chr12 133214742 133214842 -10571613 + FLAM_C SINE Alu 1 120 -23 225 320 117 0 chr12 133215697 133215800 -10570655 + L2 LINE L2 3133 3247 -25 292 335 136 28 chr12 133216986 133217162 -10569293 + MIR SINE MIR 53 247 -15 369 329 130 57 chr12 133217749 133218091 -10568364 + L1ME3 LINE L1 5618 5978 -186 493 249 122 10 chr12 133218237 133218442 -10568013 - L1MB8 LINE L1 0 6178 5951 1797 142 0 40 chr12 133218447 133218783 -10567672 - AluJo SINE Alu 0 324 1 1641 182 0 42 chr12 133219069 133219382 -10567073 - AluJo SINE Alu -8 304 5 326 188 29 29 chr12 133219460 133219529 -10566926 - MIR3 SINE MIR -42 166 98 558 173 18 0 chr12 133222053 133222163 -10564292 + L1MA5A LINE L1 6007 6118 -179 939 126 0 0 chr12 133222163 133222298 -10564157 + AluJo SINE Alu 1 135 -177 1129 120 5 16 chr12 133222312 133222496 -10563959 + L1MA5A LINE L1 6114 6295 -2 1758 147 55 17 chr12 133222502 133222794 -10563661 + AluJo SINE Alu 3 305 -7 2097 136 7 0 chr12 133222837 133223147 -10563308 - AluSx SINE Alu 0 312 1 2131 125 0 3 chr12 133223157 133223454 -10563001 - AluSx SINE Alu -16 296 1 1750 197 50 5 chr12 133223485 133223886 -10562569 + L1MB5 LINE L1 5750 6168 -6 2111 121 7 0 chr12 133226074 133226372 -10560083 - AluSx SINE Alu -12 300 1 212 340 43 0 chr12 133226717 133226811 -10559644 + MIR3 SINE MIR 5 102 -106 327 177 0 0 chr12 133229594 133229656 -10556799 + (TGG)n Simple_repeat Simple_repeat 2 63 0 258 125 0 0 chr12 133231095 133231143 -10555312 + (TCC)n Simple_repeat Simple_repeat 3 50 0 301 274 0 48 chr12 133231143 133231227 -10555228 - L1MB8 LINE L1 -1979 5829 5750 697 167 33 8 chr12 133231233 133231353 -10555102 + FLAM_C SINE Alu 7 129 -14 393 269 16 71 chr12 133232056 133232097 -10554358 + L1ME4a LINE L1 5629 5671 -450 834 159 0 0 chr12 133232097 133232229 -10554226 + FLAM_C SINE Alu 1 132 -1 393 269 16 71 chr12 133232229 133232369 -10554086 + L1ME4a LINE L1 5671 5800 -321 248 236 0 118 chr12 133232382 133232526 -10553929 + L1ME4a LINE L1 5901 6027 -94 21 82 0 0 chr12 133232606 133232655 -10553800 + AT_rich Low_complexity Low_complexity 1 49 0 1613 157 23 50 chr12 133232657 133232803 -10553652 + AluJo SINE Alu 1 136 -176 2218 96 3 0 chr12 133232803 133233094 -10553361 + AluSp SINE Alu 8 299 -14 1613 157 23 50 chr12 133233094 133233246 -10553209 + AluJo SINE Alu 136 291 -21 2136 104 27 3 chr12 133233259 133233556 -10552899 + AluSx SINE Alu 3 306 -6 389 291 79 0 chr12 133233560 133233725 -10552730 + L1ME3 LINE L1 5322 5499 -665 271 178 33 133 chr12 133233961 133234051 -10552404 - MER91B DNA MER1_type -109 81 1 498 268 34 119 chr12 133234156 133234391 -10552064 + L1ME3 LINE L1 5508 5762 -400 225 0 0 0 chr12 133234391 133234416 -10552039 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1855 154 7 0 chr12 133234425 133234718 -10551737 + AluJo SINE Alu 1 295 -17 2454 77 0 0 chr12 133234720 133235031 -10551424 + AluY SINE Alu 1 311 0 498 268 34 119 chr12 133235031 133235068 -10551387 + L1ME3 LINE L1 5771 5810 -352 2053 126 3 0 chr12 133235068 133235369 -10551086 + AluSx SINE Alu 6 307 -5 498 268 34 119 chr12 133235369 133235560 -10550895 + L1ME3 LINE L1 5810 5944 -218 2032 149 0 0 chr12 133235703 133236005 -10550450 - AluSx SINE Alu -10 302 1 736 119 119 17 chr12 133236005 133236123 -10550332 - AluJo/FLAM SINE Alu -170 132 3 328 311 180 15 chr12 133236626 133236832 -10549623 + L2 LINE L2 2930 3169 -144 204 169 56 0 chr12 133236989 133237060 -10549395 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 423 217 54 78 chr12 133237061 133237190 -10549265 + MIR SINE MIR 29 154 -108 1169 187 8 42 chr12 133237376 133237431 -10549024 + AluJb SINE Alu 76 131 -181 2639 6 0 64 chr12 133237431 133237759 -10548696 + AluYb8 SINE Alu 1 307 -11 1873 123 0 11 chr12 133237767 133238043 -10548412 + AluSg SINE Alu 38 310 0 1169 187 8 42 chr12 133238043 133238219 -10548236 + AluJb SINE Alu 138 308 -4 305 304 0 29 chr12 133238220 133238322 -10548133 - L1ME LINE L1 -413 5708 5610 1032 231 62 10 chr12 133238476 133238784 -10547671 + LTR16C LTR ERVL 168 491 0 184 296 148 11 chr12 133238835 133238923 -10547532 + MIR SINE MIR 35 134 -74 1208 179 64 99 chr12 133239018 133239331 -10547124 - AluSp SINE Alu 0 303 2 2021 106 35 0 chr12 133239338 133239620 -10546835 - AluSx SINE Alu -20 292 1 216 274 27 16 chr12 133240207 133240287 -10546168 - MIR SINE MIR -75 133 76 2378 84 0 0 chr12 133240986 133241295 -10545160 + AluSx SINE Alu 1 309 -3 266 148 34 136 chr12 133241977 133242065 -10544390 + MER91B DNA MER1_type 3 81 -109 941 254 112 55 chr12 133243189 133243324 -10543131 + L2 LINE L2 2906 3032 -281 1768 145 13 26 chr12 133243324 133243627 -10542828 - AluJo SINE Alu -13 299 1 941 254 112 55 chr12 133243627 133243876 -10542579 + L2 LINE L2 3032 3312 -1 272 346 30 0 chr12 133244431 133244532 -10541923 - MIR SINE MIR -63 145 42 378 273 88 28 chr12 133244644 133244802 -10541653 - MIR SINE MIR -23 185 6 1842 135 10 20 chr12 133246239 133246535 -10539920 - AluJo SINE Alu -16 296 4 218 271 0 0 chr12 133246549 133246597 -10539858 - MIR SINE MIR -91 171 124 1735 113 82 20 chr12 133246625 133246917 -10539538 - AluJo SINE Alu -2 310 1 294 321 73 18 chr12 133247165 133247274 -10539181 - MIR3 SINE MIR -79 129 15 816 191 141 112 chr12 133247282 133247630 -10538825 + MLT1A1 LTR MaLR 3 451 -6 189 293 17 0 chr12 133247746 133247804 -10538651 + L2 LINE L2 3250 3308 -5 326 250 153 24 chr12 133248166 133248290 -10538165 + L2 LINE L2 2494 2633 -681 1741 144 90 0 chr12 133248517 133248795 -10537660 + AluSx SINE Alu 1 303 -9 477 301 108 0 chr12 133249000 133249176 -10537279 - MIR SINE MIR -14 248 54 506 313 119 17 chr12 133249234 133249586 -10536869 - L1MC4a LINE L1 -1869 5939 5552 2238 79 7 7 chr12 133249642 133249946 -10536509 + AluSp SINE Alu 1 304 -9 439 300 22 40 chr12 133250163 133250386 -10536069 + L1MC4a LINE L1 5706 5924 -1884 1984 135 0 3 chr12 133250689 133250986 -10535469 + AluJo SINE Alu 1 296 -16 1163 203 42 22 chr12 133251876 133252187 -10534268 - L1MC/D LINE L1 -623 5710 5394 1727 155 62 3 chr12 133252189 133252480 -10533975 - AluJb SINE Alu -2 310 3 1025 92 30 12 chr12 133252494 133252658 -10533797 - L1MB8 LINE L1 -5 6173 6007 22 0 0 0 chr12 133252756 133252778 -10533677 + GC_rich Low_complexity Low_complexity 1 22 0 560 158 18 0 chr12 133253140 133253254 -10533201 + L1MB4 LINE L1 6031 6146 -34 365 288 194 6 chr12 133253777 133253937 -10532518 + MIR SINE MIR 40 229 -33 2001 226 45 7 chr12 133254244 133254691 -10531764 - MLT1C LTR MaLR 0 467 4 2357 47 0 0 chr12 133254995 133255271 -10531184 - AluY SINE Alu -19 292 17 252 370 42 17 chr12 133255343 133255462 -10530993 + MIR3 SINE MIR 81 202 -6 1100 169 60 5 chr12 133255664 133255865 -10530590 + AluJo SINE Alu 84 295 -17 2221 106 0 6 chr12 133255925 133256236 -10530219 + AluSx SINE Alu 1 309 -3 851 237 0 0 chr12 133256713 133256890 -10529565 - AluJo SINE Alu -10 302 126 2120 133 0 13 chr12 133257181 133257497 -10528958 - AluSx SINE Alu 0 312 1 667 240 0 20 chr12 133257819 133257965 -10528490 + AluJo SINE Alu 1 143 -169 2029 135 3 3 chr12 133257967 133258278 -10528177 + AluSx SINE Alu 2 312 0 1593 187 8 82 chr12 133258280 133258771 -10527684 + L1MB7 LINE L1 4450 4904 -1242 22 35 0 0 chr12 133258771 133258800 -10527655 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 133258921 133258947 -10527508 + (A)n Simple_repeat Simple_repeat 1 26 0 1110 162 4 15 chr12 133259220 133259462 -10526993 - AluJb SINE Alu -13 299 1 426 330 63 11 chr12 133259612 133259803 -10526652 + MIR SINE MIR 4 204 -58 210 341 44 0 chr12 133260502 133260593 -10525862 - MIR SINE MIR -109 153 59 197 304 59 59 chr12 133261293 133261428 -10525027 - MIR3 SINE MIR -12 196 62 4835 152 37 36 chr12 133261541 133261864 -10524591 + L1MB7 LINE L1 5007 5328 -856 692 219 0 0 chr12 133261864 133261987 -10524468 + FLAM_A SINE Alu 1 123 -10 4835 152 37 36 chr12 133261987 133262816 -10523639 + L1MB7 LINE L1 5328 6176 -8 2331 91 7 0 chr12 133263323 133263621 -10522834 - AluSp SINE Alu -13 300 1 659 260 30 40 chr12 133263709 133263909 -10522546 - MIR SINE MIR -43 219 22 283 235 122 20 chr12 133263989 133264087 -10522368 + MIR3 SINE MIR 50 157 -51 348 127 0 0 chr12 133264126 133264181 -10522274 + MLT1D LTR MaLR 51 105 -362 * 756 245 102 5 chr12 133264176 133264392 -10522063 + MLT1D LTR MaLR 261 497 -8 599 214 195 34 chr12 133264649 133264916 -10521539 - MLT1C LTR MaLR -141 326 17 348 202 34 73 chr12 133265371 133265498 -10520957 + MIR SINE MIR 69 188 -72 279 306 28 0 chr12 133266512 133266620 -10519835 - L1MA10 LINE L1 -3 6331 6221 225 228 140 0 chr12 133267110 133267167 -10519288 + MIR3 SINE MIR 110 174 -34 2142 129 10 0 chr12 133267193 133267487 -10518968 + AluSx SINE Alu 1 297 -15 197 298 8 0 chr12 133267523 133267644 -10518811 + (TG)n Simple_repeat Simple_repeat 2 123 0 291 28 0 0 chr12 133267706 133267742 -10518713 + (TG)n Simple_repeat Simple_repeat 1 36 0 194 312 55 89 chr12 133267798 133268035 -10518420 - L2 LINE L2 -50 3222 2994 3359 180 77 3 chr12 133268073 133268297 -10518158 + L1MB5 LINE L1 5451 5657 -517 2511 53 0 3 chr12 133268297 133268598 -10517857 + AluY SINE Alu 1 300 -11 3359 180 77 3 chr12 133268598 133269040 -10517415 + L1MB5 LINE L1 5657 6166 -8 2228 107 0 0 chr12 133270083 133270399 -10516056 + AluSc SINE Alu 1 316 0 263 198 315 36 chr12 133271476 133271587 -10514868 + MIR3 SINE MIR 5 146 -62 762 172 90 0 chr12 133271587 133271732 -10514723 + MLT1A2 LTR MaLR 1 158 -216 714 220 43 1 chr12 133271889 133272097 -10514358 + MLT1B LTR MaLR 155 390 0 2301 107 0 0 chr12 133273275 133273575 -10512880 + AluSq SINE Alu 1 300 -13 1123 148 6 6 chr12 133273754 133273930 -10512525 - AluJb SINE Alu -15 297 122 493 211 26 26 chr12 133274309 133274423 -10512032 + FLAM_C SINE Alu 16 129 -14 1067 218 41 32 chr12 133274426 133274766 -10511689 + LTR55 LTR ERV 111 453 -95 421 283 99 13 chr12 133276241 133276393 -10510062 + MIR SINE MIR 17 181 -81 216 254 39 48 chr12 133276433 133276574 -10509881 - L2 LINE L2 -219 3053 2917 1033 163 10 56 chr12 133276709 133276905 -10509550 + AluJ SINE Alu 1 187 -125 206 246 0 9 chr12 133276915 133276986 -10509469 - L2 LINE L2 -329 2984 2916 743 150 7 54 chr12 133277038 133277185 -10509270 + AluJ SINE Alu 173 312 0 316 273 39 13 chr12 133277185 133277262 -10509193 + HAL1b LINE L1 607 685 -663 1489 178 83 10 chr12 133277440 133277749 -10508706 + L1MC1 LINE L1 5994 6326 -3 2086 103 10 33 chr12 133277749 133278051 -10508404 + AluJb SINE Alu 11 305 -7 1112 139 27 22 chr12 133278084 133278307 -10508148 + L1MB4 LINE L1 5957 6180 0 339 143 39 0 chr12 133278313 133278390 -10508065 + L1MB8 LINE L1 6093 6172 -6 296 232 61 66 chr12 133278390 133278588 -10507867 + HAL1b LINE L1 955 1151 -197 28 48 0 0 chr12 133278675 133278717 -10507738 + AT_rich Low_complexity Low_complexity 1 42 0 387 312 80 0 chr12 133278977 133279115 -10507340 + MIR SINE MIR 66 214 -48 236 194 370 0 chr12 133281044 133281152 -10505303 - MIR3 SINE MIR -52 156 9 924 169 12 29 chr12 133282668 133282840 -10503615 - FRAM SINE Alu -8 168 1 1104 230 123 53 chr12 133282854 133283367 -10503088 + L2 LINE L2 1432 1980 -1334 181 211 115 0 chr12 133284266 133284318 -10502137 - MIR SINE MIR -67 195 138 1892 124 76 31 chr12 133284328 133284683 -10501772 - L1MB7 LINE L1 -16 6168 5798 208 369 63 18 chr12 133285272 133285383 -10501072 + MER5A DNA MER1_type 49 164 -25 239 256 100 44 chr12 133285285 133285375 -10501080 - MER5B DNA MER1_type -50 128 34 396 349 111 15 chr12 133285497 133285695 -10500760 - L2 LINE L2 -1 3271 3055 2243 119 0 3 chr12 133285707 133286002 -10500453 + AluSc SINE Alu 1 294 -15 2115 119 3 36 chr12 133286070 133286289 -10500166 + L1MB3 LINE L1 5796 6000 -183 2875 16 0 0 chr12 133286289 133286600 -10499855 - AluYb8 SINE Alu -7 311 1 2115 119 3 36 chr12 133286600 133286740 -10499715 + L1MB3 LINE L1 6000 6143 -40 2064 140 0 0 chr12 133286740 133287026 -10499429 + AluJo SINE Alu 1 286 -26 252 0 0 0 chr12 133287026 133287054 -10499401 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 254 210 72 chr12 133287279 133287684 -10498771 + L2 LINE L2 2815 3275 -38 193 213 0 43 chr12 133287743 133287790 -10498665 + L2 LINE L2 3262 3306 -7 304 304 33 0 chr12 133288263 133288355 -10498100 - MIR SINE MIR -73 135 41 448 279 39 0 chr12 133288848 133288952 -10497503 - MER91C DNA MER1_type -2 138 31 339 321 46 61 chr12 133289360 133289771 -10496684 - L1MEd LINE L1 -5204 915 511 1134 226 20 169 chr12 133289795 133290145 -10496310 - AluSx SINE Alu -4 298 1 393 208 0 144 chr12 133290190 133290315 -10496140 - MIR SINE MIR -80 182 76 816 182 7 26 chr12 133290355 133290509 -10495946 + AluJb SINE Alu 146 296 -16 2366 100 7 0 chr12 133290521 133290830 -10495625 - AluSp SINE Alu -2 311 1 617 162 0 26 chr12 133290873 133290990 -10495465 - MLT1C LTR MaLR -2 465 352 1336 202 4 8 chr12 133290990 133291248 -10495207 + AluJo SINE Alu 50 306 -6 305 290 95 10 chr12 133291286 133291486 -10494969 - L1M4 LINE L1 -2303 3843 3627 1604 171 47 17 chr12 133291491 133291789 -10494666 - AluJo SINE Alu -5 307 1 376 333 0 23 chr12 133291808 133292027 -10494428 - L1M4 LINE L1 -3056 3090 2877 1060 169 38 53 chr12 133292058 133292167 -10494288 - L1MD2 LINE L1 -2 6357 6248 2291 79 3 7 chr12 133292167 133292457 -10493998 - AluSp SINE Alu -8 305 17 1060 169 38 53 chr12 133292457 133292613 -10493842 - L1MD2 LINE L1 -111 6248 6096 676 148 9 17 chr12 133292712 133292827 -10493628 - FRAM SINE Alu -6 170 57 241 228 101 51 chr12 133293215 133293294 -10493161 + MLT1K LTR MaLR 502 584 -4 2346 115 0 0 chr12 133293391 133293696 -10492759 + AluSx SINE Alu 6 310 -2 2222 108 10 7 chr12 133293711 133294008 -10492447 + AluSx SINE Alu 1 298 -14 738 128 8 0 chr12 133294008 133294125 -10492330 + L1MB7 LINE L1 5578 5695 -485 1863 170 14 14 chr12 133294159 133294524 -10491931 + L1MB7 LINE L1 5666 6030 -154 626 158 13 20 chr12 133294524 133294676 -10491779 + CT-rich Low_complexity Low_complexity 4 154 0 304 100 0 0 chr12 133294678 133294718 -10491737 + (TC)n Simple_repeat Simple_repeat 1 40 0 814 228 0 0 chr12 133294719 133294864 -10491591 - AluJo SINE Alu -39 273 129 34 0 0 0 chr12 133294864 133294898 -10491557 + AT_rich Low_complexity Low_complexity 1 34 0 2246 124 0 16 chr12 133294905 133295220 -10491235 - AluSx SINE Alu 0 312 3 608 192 23 54 chr12 133295221 133295351 -10491104 - AluJo SINE Alu -166 146 21 182 36 0 36 chr12 133295365 133295393 -10491062 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2302 129 0 0 chr12 133295395 133295706 -10490749 - AluSx SINE Alu -1 311 1 877 134 18 30 chr12 133295706 133295870 -10490585 + L1MB7 LINE L1 6022 6183 -1 593 240 65 0 chr12 133295881 133296035 -10490420 + L1ME3A LINE L1 6007 6170 0 180 395 100 5 chr12 133296635 133296723 -10489732 - L2 LINE L2 -428 2886 2808 2305 106 0 25 chr12 133296723 133297043 -10489412 - AluSx SINE Alu 0 312 1 180 395 100 5 chr12 133297043 133297154 -10489301 - L2 LINE L2 -506 2808 2668 2042 140 33 0 chr12 133297382 133297682 -10488773 - AluSx SINE Alu -2 310 1 21 0 0 0 chr12 133297741 133297762 -10488693 + AT_rich Low_complexity Low_complexity 1 21 0 2040 147 0 7 chr12 133297766 133298066 -10488389 + AluSx SINE Alu 1 298 -14 1051 94 0 29 chr12 133298068 133298206 -10488249 + AluSq/x SINE Alu 1 134 -179 383 292 97 38 chr12 133298238 133298402 -10488053 + HAL1 LINE L1 1 179 -2328 2457 109 0 0 chr12 133298402 133298713 -10487742 + AluSx SINE Alu 1 311 -1 383 292 97 38 chr12 133298713 133298733 -10487722 + HAL1 LINE L1 179 196 -2311 1812 148 19 0 chr12 133299080 133299350 -10487105 + AluJo SINE Alu 17 291 -21 314 250 102 106 chr12 133299387 133299635 -10486820 + HAL1 LINE L1 589 837 -1670 2429 81 0 3 chr12 133299635 133299933 -10486522 - AluY SINE Alu -14 297 1 314 250 102 106 chr12 133299933 133299945 -10486510 + HAL1 LINE L1 837 848 -1659 2169 143 0 0 chr12 133299945 133300239 -10486216 - AluSx SINE Alu -18 294 1 314 250 102 106 chr12 133300239 133300469 -10485986 + HAL1 LINE L1 848 1078 -1429 260 233 0 44 chr12 133300477 133300567 -10485888 + HAL1 LINE L1 1395 1480 -1027 1747 151 10 17 chr12 133300597 133300888 -10485567 + AluJo SINE Alu 1 289 -23 940 232 28 90 chr12 133300890 133301079 -10485376 + L1MC4 LINE L1 7631 7781 -261 2328 85 10 10 chr12 133301079 133301385 -10485070 + AluSp SINE Alu 1 306 -7 940 232 28 90 chr12 133301385 133301618 -10484837 + L1MC4 LINE L1 7781 8027 -15 302 205 103 111 chr12 133301747 133301812 -10484643 + HAL1 LINE L1 2243 2307 -200 2054 159 0 0 chr12 133301812 133302108 -10484347 + AluSx SINE Alu 1 296 -16 2172 112 3 7 chr12 133302110 133302406 -10484049 + AluSq SINE Alu 1 295 -18 302 205 103 111 chr12 133302406 133302454 -10484001 + HAL1 LINE L1 2308 2358 -149 412 291 126 29 chr12 133302506 133302957 -10483498 + L1ME3 LINE L1 4484 4978 -1168 2085 129 10 10 chr12 133302977 133303280 -10483175 + AluSq SINE Alu 1 303 -10 442 307 12 11 chr12 133303336 133303529 -10482926 + L1ME3 LINE L1 5441 5634 -532 380 331 60 0 chr12 133303547 133303698 -10482757 + MLT1G1 LTR MaLR 3 162 -433 2125 125 3 3 chr12 133303700 133304013 -10482442 + AluSq SINE Alu 1 313 0 1107 181 0 0 chr12 133304016 133304182 -10482273 + AluJo/FRAM SINE Alu 129 294 -18 438 261 119 21 chr12 133304182 133304498 -10481957 + MLT1G1 LTR MaLR 161 522 -68 319 278 112 54 chr12 133304545 133304750 -10481705 + L1ME3 LINE L1 5646 5862 -300 2456 64 0 7 chr12 133304787 133305085 -10481370 + AluY SINE Alu 1 296 -15 2261 134 0 0 chr12 133305515 133305822 -10480633 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr12 133305825 133305857 -10480598 + AT_rich Low_complexity Low_complexity 1 32 0 1322 179 83 0 chr12 133305988 133306217 -10480238 - AluJb SINE Alu -7 305 58 473 276 109 46 chr12 133306384 133306486 -10479969 - MIR SINE MIR 0 262 168 2395 62 16 44 chr12 133306486 133306806 -10479649 + AluY SINE Alu 1 311 0 473 276 109 46 chr12 133306806 133306942 -10479513 - MIR SINE MIR -94 168 9 2137 127 0 26 chr12 133307639 133307946 -10478509 - AluSx SINE Alu -13 299 1 2181 113 10 3 chr12 133308373 133308665 -10477790 - AluSx SINE Alu -18 294 1 2536 139 30 35 chr12 133308775 133309236 -10477219 - L1MB5 LINE L1 0 6174 5716 1002 147 0 43 chr12 133309243 133309406 -10477049 - FRAM SINE Alu -10 156 1 334 283 81 0 chr12 133309730 133309860 -10476595 + MIR SINE MIR 44 184 -62 692 241 0 65 chr12 133309867 133310066 -10476389 + MER3 DNA MER1_type 3 188 -21 234 295 16 0 chr12 133310612 133310673 -10475782 - MIR SINE MIR -55 153 92 238 325 45 13 chr12 133311256 133311410 -10475045 + L2 LINE L2 3015 3173 -140 1426 123 38 88 chr12 133311412 133311462 -10474993 - L1MB3 LINE L1 -2 6181 6130 2164 89 45 0 chr12 133311462 133311753 -10474702 - AluSq SINE Alu -9 304 1 1426 123 38 88 chr12 133311753 133312067 -10474388 - L1MB3 LINE L1 -53 6130 5835 723 141 23 31 chr12 133312097 133312225 -10474230 + FLAM_A SINE Alu 6 132 -10 348 274 137 0 chr12 133312238 133312355 -10474100 + L2 LINE L2 3180 3312 -1 24 0 0 0 chr12 133313898 133313922 -10472533 + AT_rich Low_complexity Low_complexity 1 24 0 1529 201 27 3 chr12 133314379 133314713 -10471742 + L1MB4 LINE L1 5839 6180 0 230 274 195 9 chr12 133315019 133315132 -10471323 + L2 LINE L2 2926 3059 -254 597 320 15 5 chr12 133315273 133315476 -10470979 + MIR SINE MIR 54 258 -4 611 253 14 0 chr12 133315624 133315770 -10470685 - MIR SINE MIR -110 152 5 2122 97 57 17 chr12 133316257 133316555 -10469900 - AluSx SINE Alu -2 310 1 1933 157 41 0 chr12 133316631 133316925 -10469530 - AluJo SINE Alu -6 306 1 751 270 104 29 chr12 133316938 133317500 -10468955 + L2 LINE L2 2626 3303 -10 2114 218 49 32 chr12 133319017 133319389 -10467066 - MLT1F LTR MaLR -6 536 151 1844 125 16 49 chr12 133319389 133319694 -10466761 - AluSx SINE Alu -17 295 1 2114 218 49 32 chr12 133319694 133319848 -10466607 - MLT1F LTR MaLR -391 151 1 702 146 15 44 chr12 133321283 133321420 -10465035 + FLAM_C SINE Alu 1 133 -10 1245 217 35 13 chr12 133321967 133322301 -10464154 + L1MB7 LINE L1 5726 6058 -126 805 101 0 29 chr12 133322344 133322482 -10463973 + L1MB8 LINE L1 6045 6178 0 297 75 0 0 chr12 133322483 133322523 -10463932 + (CA)n Simple_repeat Simple_repeat 2 41 0 208 241 0 0 chr12 133324750 133324804 -10461651 + L2 LINE L2 2920 2973 -340 239 285 16 32 chr12 133325522 133325645 -10460810 + GA-rich Low_complexity Low_complexity 6 126 0 2330 91 0 7 chr12 133326031 133326364 -10460091 - AluSq SINE Alu 0 313 1 256 80 0 40 chr12 133326656 133326706 -10459749 + (CCTG)n Simple_repeat Simple_repeat 2 49 0 1410 151 13 38 chr12 133327444 133327682 -10458773 + AluJo SINE Alu 1 232 -80 23 33 0 0 chr12 133328257 133328287 -10458168 + AT_rich Low_complexity Low_complexity 1 30 0 370 295 36 7 chr12 133329044 133329183 -10457272 - MIR SINE MIR -69 193 51 815 125 28 7 chr12 133329220 133329364 -10457091 + L1MB7 LINE L1 5546 5692 -486 2315 114 0 0 chr12 133329365 133329663 -10456792 + AluSx SINE Alu 1 298 -14 649 145 0 53 chr12 133329665 133329796 -10456659 + L1MB7 LINE L1 5822 5945 -239 197 204 0 23 chr12 133330105 133330149 -10456306 - L2 LINE L2 -20 3293 3251 205 324 44 0 chr12 133330587 133330655 -10455800 + L2 LINE L2 3189 3259 -13 483 158 21 2 chr12 133330802 133331044 -10455411 + AluJo SINE Alu 6 293 -19 1069 150 6 0 chr12 133331952 133332112 -10454343 - FRAM SINE Alu -18 158 1 400 335 42 30 chr12 133332674 133332841 -10453614 + MIR3 SINE MIR 16 184 -24 2079 99 0 63 chr12 133332901 133333252 -10453203 - AluSp SINE Alu 0 332 1 812 235 262 23 chr12 133333252 133333321 -10453134 + L2 LINE L2 2517 2568 -745 3285 30 0 104 chr12 133333321 133333821 -10452634 + LTR7 LTR ERV1 1 448 -2 812 235 262 23 chr12 133333821 133334396 -10452059 + L2 LINE L2 2568 3309 -4 266 302 10 10 chr12 133335108 133335204 -10451251 + L2 LINE L2 2618 2713 -601 1043 161 0 0 chr12 133335263 133335425 -10451030 + FRAM SINE Alu 1 162 -4 384 331 8 8 chr12 133337132 133337256 -10449199 + L2 LINE L2 3190 3313 0 249 284 43 35 chr12 133337828 133337944 -10448511 - MIR SINE MIR -62 146 30 345 306 76 0 chr12 133337970 133338114 -10448341 + MIR SINE MIR 32 186 -76 1750 167 14 0 chr12 133338990 133339271 -10447184 - AluJo SINE Alu -23 289 5 2486 64 3 3 chr12 133341560 133341858 -10444597 - AluY SINE Alu -13 298 1 1657 186 7 7 chr12 133342439 133342714 -10443741 + AluJb SINE Alu 1 275 -37 2855 154 14 6 chr12 133342739 133343233 -10443222 - L1MB7 LINE L1 -49 6135 5638 615 295 58 22 chr12 133343624 133343848 -10442607 + MIR SINE MIR 14 245 -17 192 163 0 102 chr12 133343878 133343927 -10442528 + MIR SINE MIR 104 147 -61 363 96 0 0 chr12 133344563 133344615 -10441840 + (CA)n Simple_repeat Simple_repeat 1 52 0 425 250 0 19 chr12 133345107 133345215 -10441240 + MLT1G1 LTR MaLR 108 213 -336 863 179 29 6 chr12 133345216 133345389 -10441066 + L1MB4 LINE L1 5654 5830 -350 1954 170 7 0 chr12 133345389 133345689 -10440766 + AluJb SINE Alu 1 302 -10 682 274 89 33 chr12 133345811 133346081 -10440374 + MLT1G1 LTR MaLR 306 590 -5 554 216 8 37 chr12 133346476 133346610 -10439845 + MIR3 SINE MIR 78 207 -1 943 260 113 18 chr12 133346852 133347179 -10439276 + MLT1J2 LTR MaLR 93 450 0 2102 119 0 7 chr12 133348377 133348680 -10437775 - AluY SINE Alu -10 301 1 210 143 0 0 chr12 133348796 133348831 -10437624 + (T)n Simple_repeat Simple_repeat 1 35 0 225 304 81 25 chr12 133349220 133349381 -10437074 + MIR3 SINE MIR 23 192 -16 708 241 37 0 chr12 133350253 133350415 -10436040 + FRAM SINE Alu 4 171 -5 1681 177 29 23 chr12 133350557 133350867 -10435588 - AluJo SINE Alu 0 312 1 1026 169 0 29 chr12 133350877 133351049 -10435406 - AluJb SINE Alu -12 300 134 566 141 42 9 chr12 133351053 133351176 -10435279 - L1MB3 LINE L1 -45 6126 5979 2361 112 3 0 chr12 133351203 133351508 -10434947 + AluSx SINE Alu 1 306 -6 749 330 21 21 chr12 133351936 133352312 -10434143 + L1MC4a LINE L1 5524 5899 -1909 1896 161 3 10 chr12 133352352 133352651 -10433804 + AluJo SINE Alu 1 297 -15 180 0 0 0 chr12 133352651 133352671 -10433784 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1930 168 0 3 chr12 133352675 133352978 -10433477 + AluSx SINE Alu 1 302 -10 2285 101 0 7 chr12 133352996 133353303 -10433152 + AluY SINE Alu 1 305 -6 1246 131 0 0 chr12 133353304 133353472 -10432983 + AluSg/x SINE Alu 133 300 -12 1219 71 12 0 chr12 133353595 133353765 -10432690 - L1PA5 LINE L1 0 6154 5983 26 50 0 0 chr12 133353827 133353867 -10432588 + AT_rich Low_complexity Low_complexity 1 40 0 1771 139 4 8 chr12 133353986 133354245 -10432210 - AluJo SINE Alu -17 295 38 2435 73 0 0 chr12 133354585 133354872 -10431583 + AluSg SINE Alu 1 287 -23 407 169 52 0 chr12 133354872 133354949 -10431506 + AluJ/FRAM SINE Alu 216 296 -16 2040 147 3 6 chr12 133354953 133355265 -10431190 - AluSx SINE Alu -1 311 1 2648 68 0 0 chr12 133355640 133355951 -10430504 + AluY SINE Alu 1 311 0 2051 142 0 17 chr12 133355965 133356267 -10430188 + AluSq SINE Alu 1 297 -16 2265 125 0 0 chr12 133356444 133356749 -10429706 + AluSx SINE Alu 1 305 -7 660 189 161 7 chr12 133356792 133356935 -10429520 + AluJb SINE Alu 136 300 -12 2423 81 10 0 chr12 133357123 133357420 -10429035 - AluSc SINE Alu -9 300 1 1568 109 194 4 chr12 133357468 133357715 -10428740 - AluSg SINE Alu -10 300 7 2369 107 3 0 chr12 133357797 133358105 -10428350 - AluSx SINE Alu -3 309 1 667 197 118 171 chr12 133358424 133358616 -10427839 - HsTC2 DNA Tc2 -2 1896 1695 765 172 0 8 chr12 133358616 133358750 -10427705 - FLAM_C SINE Alu 0 133 1 667 197 118 171 chr12 133358750 133358761 -10427694 - HsTC2 DNA Tc2 -203 1695 1685 2281 107 0 7 chr12 133358761 133359051 -10427404 - AluSc SINE Alu -21 288 1 667 197 118 171 chr12 133359051 133359157 -10427298 - HsTC2 DNA Tc2 -213 1685 1575 279 79 0 0 chr12 133359157 133359195 -10427260 + (TCTCC)n Simple_repeat Simple_repeat 3 40 0 227 237 68 0 chr12 133359200 133359259 -10427196 - AluJ/monomer SINE Alu 0 302 240 1678 171 13 45 chr12 133359202 133359512 -10426943 - AluJo SINE Alu -12 300 1 667 197 118 171 chr12 133359512 133359800 -10426655 - HsTC2 DNA Tc2 -580 1318 1286 436 238 8 63 chr12 133359787 133359913 -10426542 - HsTC2 DNA Tc2 -1743 155 37 * 2332 94 0 0 chr12 133360121 133360407 -10426048 - AluSx SINE Alu -18 294 9 2086 130 0 27 chr12 133360785 133361086 -10425369 - AluSx SINE Alu -19 293 1 268 61 0 0 chr12 133361133 133361166 -10425289 - U2 snRNA snRNA -155 33 1 2320 109 7 0 chr12 133361353 133361656 -10424799 - AluSp SINE Alu -8 305 1 2036 144 0 10 chr12 133361691 133361983 -10424472 + AluJb SINE Alu 1 289 -23 1905 162 3 0 chr12 133364001 133364291 -10422164 + AluJo SINE Alu 4 294 -18 2141 127 0 26 chr12 133364718 133365025 -10421430 + AluSx SINE Alu 1 299 -13 428 276 109 46 chr12 133365722 133365858 -10420597 + MIR SINE MIR 9 135 -127 2406 62 16 44 chr12 133365858 133366178 -10420277 - AluY SINE Alu 0 311 1 428 276 109 46 chr12 133366178 133366280 -10420175 + MIR SINE MIR 135 262 0 1320 179 83 0 chr12 133366447 133366676 -10419779 + AluJb SINE Alu 58 305 -7 25 31 0 0 chr12 133366806 133366838 -10419617 + AT_rich Low_complexity Low_complexity 1 32 0 2227 134 0 3 chr12 133366841 133367148 -10419307 - AluSx SINE Alu -6 306 1 2584 38 0 3 chr12 133367578 133367870 -10418585 - AluY SINE Alu -16 295 5 2283 112 0 0 chr12 133367870 133368174 -10418281 - AluSg SINE Alu -6 304 1 1732 150 43 4 chr12 133368204 133368484 -10417971 + AluJo SINE Alu 1 291 -21 1935 186 51 32 chr12 133368495 133369021 -10417434 - L1MB7 LINE L1 -16 6168 5633 2260 86 0 0 chr12 133369308 133369586 -10416869 - AluSq SINE Alu -15 298 21 1339 185 87 3 chr12 133369610 133369897 -10416558 - AluJo SINE Alu -1 311 1 357 284 67 15 chr12 133369897 133370031 -10416424 + L2 LINE L2 3169 3309 -4 2275 95 10 3 chr12 133370065 133370360 -10416095 - AluSg SINE Alu -13 297 1 2322 101 3 3 chr12 133370743 133371041 -10415414 + AluSx SINE Alu 1 298 -14 2105 146 0 0 chr12 133371370 133371679 -10414776 - AluSx SINE Alu -3 309 1 696 185 23 0 chr12 133372032 133372162 -10414293 - FLAM_A SINE Alu 0 133 1 515 263 88 28 chr12 133372263 133372514 -10413941 - HAL1 LINE L1 -60 2447 2182 414 0 0 0 chr12 133372515 133372561 -10413894 + (TG)n Simple_repeat Simple_repeat 2 47 0 1885 107 63 0 chr12 133372572 133372842 -10413613 - AluSg SINE Alu -7 303 17 1090 180 0 6 chr12 133373010 133373193 -10413262 - AluJb SINE Alu -2 310 129 2036 137 0 29 chr12 133373197 133373504 -10412951 - AluSx SINE Alu -14 298 1 412 181 144 9 chr12 133373506 133373647 -10412808 - L1MC4a LINE L1 -633 7175 7056 361 235 140 0 chr12 133373647 133373782 -10412673 - FLAM_A SINE Alu -1 132 28 1245 221 21 14 chr12 133373783 133374073 -10412382 - L1MC4 LINE L1 -984 7058 6767 1437 135 0 10 chr12 133374073 133374280 -10412175 + AluSx SINE Alu 1 205 -107 2407 109 3 0 chr12 133374315 133374626 -10411829 - AluSp SINE Alu -1 312 1 358 355 20 20 chr12 133374963 133375115 -10411340 - L1ME3A LINE L1 -208 5962 5811 2284 102 7 3 chr12 133375216 133375521 -10410934 + AluY SINE Alu 1 306 -5 32 43 0 0 chr12 133376166 133376212 -10410243 + AT_rich Low_complexity Low_complexity 1 46 0 2074 116 10 13 chr12 133376250 133376552 -10409903 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr12 133377257 133377293 -10409162 + AT_rich Low_complexity Low_complexity 1 36 0 2486 83 0 0 chr12 133377657 133377957 -10408498 - AluSx SINE Alu -12 300 1 2094 154 80 7 chr12 133378471 133378907 -10407548 + L1MB7 LINE L1 5701 6168 -16 580 172 95 0 chr12 133378991 133379107 -10407348 - FLAM_A SINE Alu -6 127 1 1049 122 0 0 chr12 133379414 133379562 -10406893 + FRAM SINE Alu 27 174 -2 743 104 0 75 chr12 133381801 133381935 -10404520 - FLAM_C SINE Alu -5 128 5 2102 117 0 43 chr12 133382208 133382533 -10403922 - AluSx SINE Alu 0 312 2 239 313 215 18 chr12 133382997 133383160 -10403295 - MIR SINE MIR -48 214 20 276 200 0 29 chr12 133384516 133384586 -10401869 + CT-rich Low_complexity Low_complexity 2 69 0 397 337 12 6 chr12 133387435 133387607 -10398848 + (CA)n Simple_repeat Simple_repeat 2 174 0 383 201 8 40 chr12 133387989 133388265 -10398190 + (TG)n Simple_repeat Simple_repeat 1 267 0 279 296 103 32 chr12 133388389 133388581 -10397874 - MIR SINE MIR -50 212 8 263 137 59 0 chr12 133389095 133389146 -10397309 + MIR SINE MIR 114 167 -95 262 260 47 115 chr12 133389237 133389429 -10397026 + L1MC4 LINE L1 7863 8041 -1 305 305 9 33 chr12 133390283 133390421 -10396034 + MIR SINE MIR 22 155 -78 329 260 171 14 chr12 133390767 133390913 -10395542 + MIR SINE MIR 20 188 -74 186 284 45 11 chr12 133392259 133392347 -10394108 - MIR3 SINE MIR -33 175 85 203 280 67 13 chr12 133392759 133392834 -10393621 - MIR SINE MIR -78 130 51 * 251 296 11 57 chr12 133392832 133392920 -10393535 - L2 LINE L2 -2 3270 3187 267 252 7 116 chr12 133393276 133393722 -10392733 + MER5A DNA MER1_type 43 173 -16 371 227 7 107 chr12 133393295 133393372 -10393083 - MER5A DNA MER1_type -48 141 85 1905 163 20 0 chr12 133393372 133393672 -10392783 - AluJo SINE Alu -6 306 1 371 227 7 107 chr12 133393672 133393744 -10392711 - MER5A DNA MER1_type -104 85 7 2213 56 71 0 chr12 133394141 133394457 -10391998 - AluY SINE Alu 0 335 1 1673 165 70 95 chr12 133394859 133395139 -10391316 - MLT1C LTR MaLR 0 467 181 411 21 0 0 chr12 133395139 133395187 -10391268 + (TG)n Simple_repeat Simple_repeat 1 48 0 2123 115 4 0 chr12 133395187 133395466 -10390989 - AluSq SINE Alu -33 280 1 1673 165 70 95 chr12 133395466 133395657 -10390798 - MLT1C LTR MaLR -284 183 7 258 287 156 0 chr12 133397682 133397804 -10388651 - MIR SINE MIR -51 211 71 247 353 20 7 chr12 133398303 133398462 -10387993 + MIR SINE MIR 30 152 -56 222 37 0 0 chr12 133398597 133398624 -10387831 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 281 258 98 45 chr12 133398766 133398898 -10387557 - MIR3 SINE MIR -53 155 17 1426 123 38 88 chr12 133399845 133400159 -10386296 + L1MB3 LINE L1 5835 6130 -53 2164 89 45 0 chr12 133400159 133400450 -10386005 + AluSq SINE Alu 1 304 -9 1426 123 38 88 chr12 133400450 133400500 -10385955 + L1MB3 LINE L1 6130 6181 -2 238 325 45 13 chr12 133400502 133400656 -10385799 - L2 LINE L2 -140 3173 3015 234 295 16 0 chr12 133401239 133401300 -10385155 + MIR SINE MIR 92 153 -55 692 241 0 65 chr12 133401845 133402044 -10384411 - MER3 DNA MER1_type -21 188 3 317 283 81 0 chr12 133402051 133402181 -10384274 - MIR SINE MIR -62 146 44 930 147 0 43 chr12 133402505 133402668 -10383787 + FRAM SINE Alu 1 156 -10 2397 139 30 35 chr12 133402675 133403136 -10383319 + L1MB5 LINE L1 5716 6174 0 2246 95 61 3 chr12 133403246 133403542 -10382913 + AluSq SINE Alu 1 313 0 276 200 0 29 chr12 133404764 133404834 -10381621 + CT-rich Low_complexity Low_complexity 2 69 0 397 337 12 6 chr12 133407690 133407862 -10378593 + (CA)n Simple_repeat Simple_repeat 2 174 0 379 209 26 4 chr12 133408244 133408479 -10377976 + (TG)n Simple_repeat Simple_repeat 1 240 0 311 322 138 18 chr12 133408645 133408837 -10377618 - MIR SINE MIR -11 197 8 258 137 59 0 chr12 133409351 133409402 -10377053 + MIR SINE MIR 114 167 -95 243 260 47 115 chr12 133409493 133409685 -10376770 + L1MC4 LINE L1 7863 8041 -1 325 327 26 29 chr12 133410539 133410728 -10375727 + MIR SINE MIR 22 212 -50 348 286 157 7 chr12 133411023 133411170 -10375285 + MIR SINE MIR 20 188 -74 218 284 45 11 chr12 133412516 133412604 -10373851 - MIR3 SINE MIR -33 175 85 213 280 67 13 chr12 133413015 133413090 -10373365 - MIR SINE MIR -78 130 52 * 293 327 140 28 chr12 133413088 133413302 -10373153 - L2 LINE L2 -2 3270 3033 389 295 0 88 chr12 133413508 133413628 -10372827 - MER5A DNA MER1_type -7 182 84 1818 163 20 0 chr12 133413628 133413928 -10372527 - AluJo SINE Alu -6 306 1 389 295 0 88 chr12 133413928 133414000 -10372455 - MER5A DNA MER1_type -105 84 7 2114 52 71 0 chr12 133414397 133414705 -10371750 - AluY SINE Alu 0 327 1 1549 165 70 95 chr12 133415119 133415399 -10371056 - MLT1C LTR MaLR 0 467 181 411 21 0 0 chr12 133415399 133415447 -10371008 + (TG)n Simple_repeat Simple_repeat 1 48 0 2025 115 4 0 chr12 133415447 133415726 -10370729 - AluSq SINE Alu -33 280 1 1549 165 70 95 chr12 133415726 133415917 -10370538 - MLT1C LTR MaLR -284 183 7 191 281 110 0 chr12 133415955 133416037 -10370418 + L3 LINE CR1 845 935 -642 229 320 188 11 chr12 133416142 133416323 -10370132 + L3 LINE CR1 1253 1465 -112 298 293 96 11 chr12 133417936 133418114 -10368341 - MIR SINE MIR -45 217 18 297 360 18 18 chr12 133418563 133418727 -10367728 + MIR SINE MIR 30 193 -69 222 37 0 0 chr12 133418857 133418884 -10367571 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 288 305 97 31 chr12 133418939 133419166 -10367289 - MIR3 SINE MIR -11 251 6 271 250 60 111 chr12 133419436 133419660 -10366795 - MIR SINE MIR -6 256 24 701 207 182 44 chr12 133420079 133420354 -10366101 + MER46C DNA MER2_type 1 313 -25 208 333 61 20 chr12 133420592 133420691 -10365764 - MIR SINE MIR -108 154 52 227 310 14 78 chr12 133421393 133421572 -10364883 + MIR SINE MIR 17 185 -55 450 230 0 0 chr12 133421796 133421944 -10364511 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 214 339 0 0 chr12 133421986 133422051 -10364404 + MIR3 SINE MIR 104 168 -40 1344 197 24 4 chr12 133422920 133423169 -10363286 - L1MB5 LINE L1 -9 6165 5912 334 377 91 30 chr12 133423838 133424135 -10362320 - L2 LINE L2 -15 3257 2943 246 368 26 32 chr12 133424420 133424575 -10361880 - L2 LINE L2 -592 2722 2569 2409 76 3 0 chr12 133425501 133425802 -10360653 - AluSp SINE Alu -11 302 1 216 0 0 0 chr12 133426985 133427009 -10359446 + (TG)n Simple_repeat Simple_repeat 2 25 0 1799 152 4 0 chr12 133427809 133428114 -10358341 - AluSx SINE Alu 0 311 6 231 228 101 51 chr12 133428211 133428290 -10358165 - MLT1K LTR MaLR -4 584 502 694 148 9 17 chr12 133428678 133428793 -10357662 + FRAM SINE Alu 57 170 -6 529 173 39 58 chr12 133428892 133429048 -10357407 + L1MD2 LINE L1 6096 6248 -111 2051 81 3 14 chr12 133429048 133429332 -10357123 + AluSp SINE Alu 17 297 -16 492 274 45 15 chr12 133431214 133431415 -10355040 + MER20 DNA MER1_type 9 215 -4 185 313 0 0 chr12 133433535 133433583 -10352872 - MIR SINE MIR -107 155 108 397 321 0 37 chr12 133434555 133434689 -10351766 + MIR SINE MIR 24 152 -110 214 373 25 19 chr12 133438358 133438516 -10347939 - MIR SINE MIR -24 238 80 297 207 0 0 chr12 133439937 133440019 -10346436 + CT-rich Low_complexity Low_complexity 1 82 0 270 194 0 0 chr12 133440030 133440097 -10346358 + GA-rich Low_complexity Low_complexity 1 67 0 643 268 131 0 chr12 133441696 133441879 -10344576 - MIR SINE MIR -50 212 6 345 183 32 0 chr12 133442097 133442190 -10344265 + LTR16A1 LTR ERVL 270 365 -92 209 375 45 18 chr12 133443322 133443434 -10343021 + MIR SINE MIR 84 198 -64 294 286 15 53 chr12 133443529 133443662 -10342793 - MIR3 SINE MIR -72 136 9 484 312 70 0 chr12 133444055 133444212 -10342243 - MIR SINE MIR 0 262 95 438 194 50 43 chr12 133444351 133444490 -10341965 + LTR33 LTR ERVL 356 495 -26 197 159 0 101 chr12 133445098 133445160 -10341295 - MIR SINE MIR -55 153 112 321 350 81 6 chr12 133445486 133445646 -10340809 + MIR SINE MIR 9 180 -82 372 281 74 0 chr12 133445946 133446081 -10340374 + MIR SINE MIR 78 222 -40 392 218 118 0 chr12 133446112 133446222 -10340233 - MIR SINE MIR -32 230 108 572 228 8 0 chr12 133447199 133447326 -10339129 - MIR SINE MIR -85 177 50 2282 95 20 0 chr12 133447785 133448091 -10338364 - AluSx SINE Alu 0 312 1 3335 182 94 60 chr12 133448216 133449100 -10337355 + MER21A LTR ERV1 1 914 -17 867 317 143 42 chr12 133449127 133449291 -10337164 + L2 LINE L2 2042 2188 -1126 2513 47 0 0 chr12 133449291 133449587 -10336868 - AluY SINE Alu -14 297 2 867 317 143 42 chr12 133449587 133450070 -10336385 + L2 LINE L2 2188 2796 -518 2338 54 0 10 chr12 133450070 133450368 -10336087 - AluY SINE Alu -15 296 2 867 317 143 42 chr12 133450368 133450567 -10335888 + L2 LINE L2 2796 2974 -340 21 0 0 0 chr12 133450762 133450783 -10335672 + AT_rich Low_complexity Low_complexity 1 21 0 905 144 0 0 chr12 133450842 133450974 -10335481 - FLAM_C SINE Alu -1 132 1 408 291 8 16 chr12 133451269 133451396 -10335059 - MIR3 SINE MIR -5 203 78 1951 113 35 0 chr12 133451851 133452133 -10334322 + AluSc SINE Alu 1 292 -17 2221 106 0 6 chr12 133452193 133452504 -10333951 + AluSx SINE Alu 1 309 -3 851 237 0 0 chr12 133452982 133453159 -10333296 - AluJo SINE Alu -10 302 126 2107 136 0 13 chr12 133453450 133453766 -10332689 - AluSx SINE Alu 0 312 1 1090 201 111 66 chr12 133454089 133454236 -10332219 + AluJo SINE Alu 2 141 -161 2024 133 3 3 chr12 133454236 133454538 -10331917 + AluSx SINE Alu 2 303 -9 1090 201 111 66 chr12 133454538 133454678 -10331777 + AluJo SINE Alu 141 302 0 1863 143 0 0 chr12 133455533 133455798 -10330657 + AluSx SINE Alu 1 265 -47 389 150 14 0 chr12 133456206 133456286 -10330169 + L1MC4 LINE L1 7519 7691 -304 1367 175 0 76 chr12 133456367 133456682 -10329773 + AluJo SINE Alu 1 291 -21 627 90 0 148 chr12 133456714 133456836 -10329619 + AluJb SINE Alu 188 291 -21 2177 58 47 0 chr12 133456899 133457175 -10329280 - AluSc SINE Alu -14 295 7 2090 115 0 0 chr12 133457179 133457483 -10328972 - AluSg SINE Alu -6 304 1 1586 144 47 4 chr12 133457513 133457791 -10328664 + AluJo SINE Alu 1 290 -22 555 154 56 21 chr12 133457794 133457937 -10328518 - L1MB8 LINE L1 0 6178 6031 1863 121 3 68 chr12 133458112 133458434 -10328021 - AluSp SINE Alu -12 301 1 262 309 87 50 chr12 133458474 133458795 -10327660 + L2 LINE L2 2901 3299 -14 1862 166 0 3 chr12 133458845 133459158 -10327297 + AluJb SINE Alu 1 312 0 1283 174 0 13 chr12 133459184 133459419 -10327036 + AluJb SINE Alu 1 232 -80 1929 102 3 57 chr12 133459419 133459557 -10326898 + AluSx SINE Alu 1 145 -167 2293 103 0 0 chr12 133459557 133459867 -10326588 + AluSx SINE Alu 3 312 0 1929 102 3 57 chr12 133459867 133460042 -10326413 + AluSx SINE Alu 145 297 -15 1808 149 10 0 chr12 133460044 133460373 -10326082 + AluSx SINE Alu 1 332 0 2153 81 0 7 chr12 133460373 133460682 -10325773 + AluY SINE Alu 1 307 0 2072 113 13 0 chr12 133460694 133461003 -10325452 + AluSq SINE Alu 1 313 0 2207 81 0 26 chr12 133461033 133461340 -10325115 + AluY SINE Alu 1 299 -12 22 56 0 0 chr12 133461704 133461740 -10324715 + AT_rich Low_complexity Low_complexity 1 36 0 1935 111 10 3 chr12 133462466 133462754 -10323701 - AluSc SINE Alu -19 290 1 32 43 0 0 chr12 133462792 133462838 -10323617 + AT_rich Low_complexity Low_complexity 1 46 0 1628 148 0 31 chr12 133464225 133464516 -10321939 + AluJo SINE Alu 1 282 -30 570 118 78 0 chr12 133464539 133464641 -10321814 + FLAM_C SINE Alu 22 131 -12 2058 109 0 0 chr12 133465099 133465406 -10321049 - AluSx SINE Alu 0 307 1 2229 152 81 7 chr12 133465918 133466351 -10320104 + L1MB7 LINE L1 5701 6165 -19 612 172 95 0 chr12 133466438 133466554 -10319901 - FLAM_A SINE Alu -6 127 1 974 122 0 0 chr12 133466861 133467009 -10319446 + FRAM SINE Alu 27 174 -2 782 104 0 75 chr12 133469248 133469382 -10317073 - FLAM_C SINE Alu -5 128 5 1954 107 0 4 chr12 133469700 133469980 -10316475 - AluSx SINE Alu -32 280 2 273 301 224 19 chr12 133470443 133470599 -10315856 - MIR SINE MIR -48 214 27 1721 78 0 33 chr12 133470712 133470956 -10315499 - AluY SINE Alu -75 236 1 658 115 0 19 chr12 133471091 133471215 -10315240 + AluSg/x SINE Alu 183 304 0 379 287 132 0 chr12 133471218 133471347 -10315108 - MIR SINE MIR -73 189 44 295 305 122 10 chr12 133471456 133471737 -10314718 - L2 LINE L2 -273 3040 2730 32 26 0 0 chr12 133471974 133472013 -10314442 + AT_rich Low_complexity Low_complexity 1 39 0 304 196 0 0 chr12 133472137 133472188 -10314267 - L1MC4 LINE L1 -1339 6703 6653 1703 116 4 0 chr12 133472202 133472443 -10314012 - AluSq SINE Alu -30 283 42 2033 109 33 7 chr12 133472453 133472755 -10313700 - AluSg SINE Alu 0 310 1 897 83 0 8 chr12 133472756 133472877 -10313578 - AluSq/x SINE Alu -178 135 16 527 211 204 0 chr12 133472897 133473049 -10313406 + MER20B DNA MER1_type 1 183 -600 1317 217 65 0 chr12 133473129 133473438 -10313017 + MER20B DNA MER1_type 389 717 -66 299 164 0 30 chr12 133474885 133474952 -10311503 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1703 116 4 0 chr12 133474954 133475195 -10311260 - AluSq SINE Alu -30 283 42 1979 116 33 7 chr12 133475205 133475506 -10310949 - AluSg SINE Alu 0 310 2 1914 138 28 0 chr12 133475549 133475838 -10310617 - AluSg SINE Alu -13 297 1 2411 57 0 0 chr12 133476820 133477117 -10309338 - AluY SINE Alu -14 297 1 740 187 84 39 chr12 133477121 133477276 -10309179 - FRAM SINE Alu -17 159 1 1857 130 10 7 chr12 133477305 133477606 -10308849 - AluSx SINE Alu -10 302 1 1926 142 0 34 chr12 133477667 133477990 -10308465 - AluSx SINE Alu 0 312 1 1605 78 176 4 chr12 133478318 133478573 -10307882 - AluSg1 SINE Alu -10 299 1 1879 109 42 0 chr12 133478821 133479104 -10307351 - AluSx SINE Alu -17 295 1 331 310 158 44 chr12 133479133 133479198 -10307257 - L1ME3A LINE L1 -216 5954 5898 1884 137 0 36 chr12 133479198 133479364 -10307091 - AluJb SINE Alu -17 295 143 2023 122 0 7 chr12 133479364 133479658 -10306797 - AluSg SINE Alu -18 292 1 1884 137 0 36 chr12 133479658 133479797 -10306658 - AluJb SINE Alu -169 143 1 331 310 158 44 chr12 133479797 133479934 -10306521 - L1ME3A LINE L1 -272 5898 5729 491 267 130 10 chr12 133479961 133480337 -10306118 - L1ME3A LINE L1 -497 5673 5257 2085 100 7 3 chr12 133480387 133480678 -10305777 + AluSx SINE Alu 1 292 -20 2040 120 0 0 chr12 133480682 133480993 -10305462 + AluSx SINE Alu 1 311 0 1305 206 74 43 chr12 133481361 133481544 -10304911 - MER58B DNA MER1_type -2082 338 139 2216 118 0 0 chr12 133481544 133481848 -10304607 - AluSx SINE Alu -8 304 1 1305 206 74 43 chr12 133481848 133481989 -10304466 - MER58B DNA MER1_type -2281 139 4 2223 95 20 0 chr12 133482087 133482391 -10304064 - AluSx SINE Alu -2 310 1 3807 174 98 65 chr12 133482516 133483401 -10303054 + MER21A LTR ERV1 1 914 -17 1188 311 147 32 chr12 133483425 133483592 -10302863 + L2 LINE L2 2038 2184 -1088 2474 48 0 0 chr12 133483592 133483887 -10302568 - AluY SINE Alu -15 296 2 1188 311 147 32 chr12 133483887 133484369 -10302086 + L2 LINE L2 2184 2816 -456 2353 50 0 10 chr12 133484369 133484669 -10301786 - AluY SINE Alu -14 297 1 1188 311 147 32 chr12 133484669 133484890 -10301565 + L2 LINE L2 2816 3010 -262 22 0 0 0 chr12 133485036 133485058 -10301397 + AT_rich Low_complexity Low_complexity 1 22 0 886 144 0 0 chr12 133485118 133485250 -10301205 - FLAM_C SINE Alu -1 132 1 455 268 16 24 chr12 133485545 133485672 -10300783 - MIR3 SINE MIR -5 203 78 1926 107 36 0 chr12 133486128 133486408 -10300047 + AluSc SINE Alu 1 290 -19 2031 101 10 3 chr12 133486475 133486763 -10299692 + AluSx SINE Alu 5 294 -18 1837 112 18 0 chr12 133486768 133487046 -10299409 + AluSx SINE Alu 15 297 -15 914 146 0 118 chr12 133487051 133487167 -10299288 + AluJo SINE Alu 1 129 -183 2390 58 0 3 chr12 133487167 133487475 -10298980 + AluY SINE Alu 2 308 -3 1211 54 0 32 chr12 133487485 133487670 -10298785 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 914 146 0 118 chr12 133487670 133487754 -10298701 + AluJo SINE Alu 139 187 -125 235 31 0 239 chr12 133487784 133488010 -10298445 + (CTGGGG)n Simple_repeat Simple_repeat 1 172 0 614 226 15 0 chr12 133488014 133488147 -10298308 + AluSg/x SINE Alu 174 308 -2 265 185 0 0 chr12 133488167 133488221 -10298234 - L1MB7 LINE L1 -19 6165 6112 2491 37 0 0 chr12 133488224 133488522 -10297933 + AluY SINE Alu 1 298 -13 1284 103 5 63 chr12 133488533 133488756 -10297699 + AluSc SINE Alu 1 210 -99 712 206 14 14 chr12 133488756 133488902 -10297553 + AluJo SINE Alu 78 223 -89 296 358 2 17 chr12 133488902 133489197 -10297258 + C-rich Low_complexity Low_complexity 1 290 0 376 369 0 13 chr12 133489236 133489393 -10297062 + C-rich Low_complexity Low_complexity 3 157 0 23 0 0 0 chr12 133489393 133489416 -10297039 + GC_rich Low_complexity Low_complexity 1 23 0 1713 66 172 4 chr12 133489615 133489871 -10296584 - AluSg1 SINE Alu -10 299 1 1623 152 23 29 chr12 133489983 133490292 -10296163 + AluJb SINE Alu 1 307 -5 1997 110 28 0 chr12 133490377 133490659 -10295796 + AluSg SINE Alu 7 296 -14 910 137 0 13 chr12 133490932 133491085 -10295370 - AluSp/q SINE Alu -8 305 155 2318 73 0 7 chr12 133491126 133491426 -10295029 - AluY SINE Alu -13 298 1 29 60 0 0 chr12 133491610 133491660 -10294795 + AT_rich Low_complexity Low_complexity 1 50 0 2144 96 0 3 chr12 133491691 133491982 -10294473 + AluSc SINE Alu 1 290 -19 24 0 0 0 chr12 133492107 133492131 -10294324 + AT_rich Low_complexity Low_complexity 1 24 0 1713 150 33 0 chr12 133492164 133492468 -10293987 - AluSx SINE Alu 0 313 1 850 145 0 0 chr12 133492491 133492615 -10293840 - FLAM_C SINE Alu -19 124 1 1286 52 0 0 chr12 133493075 133493228 -10293227 - AluY SINE Alu -158 153 1 2149 108 0 0 chr12 133493926 133494222 -10292233 - AluSg SINE Alu -14 296 1 1776 144 17 10 chr12 133494625 133494924 -10291531 - AluJb SINE Alu -11 301 1 1162 237 118 9 chr12 133495118 133495464 -10290991 + L2 LINE L2 2466 2849 -465 1615 112 27 39 chr12 133495469 133495542 -10290913 - Tigger5 DNA MER2_type -4 2319 2247 1596 188 14 3 chr12 133495542 133495835 -10290620 + AluJb SINE Alu 1 296 -16 1615 112 27 39 chr12 133495835 133496021 -10290434 - Tigger5 DNA MER2_type -76 2247 2063 2333 77 0 0 chr12 133496022 133496320 -10290135 + AluY SINE Alu 1 298 -13 180 0 0 0 chr12 133496394 133496414 -10290041 + (A)n Simple_repeat Simple_repeat 1 20 0 1449 194 4 0 chr12 133496518 133496791 -10289664 - L1 LINE L1 -1864 4998 4725 1875 93 73 0 chr12 133496793 133497082 -10289373 - AluSx SINE Alu -2 310 1 458 158 32 0 chr12 133497085 133497180 -10289275 - L1 LINE L1 -3210 3652 3555 1179 113 5 16 chr12 133497190 133497375 -10289080 - AluSq SINE Alu -6 307 125 3618 132 53 36 chr12 133497377 133497462 -10288993 - L1PBa LINE L1 -3303 3559 3477 2412 63 3 0 chr12 133497462 133497764 -10288691 - AluY SINE Alu 0 311 9 3618 132 53 36 chr12 133497764 133498407 -10288048 - L1PBa LINE L1 -3385 3477 2798 2305 93 0 0 chr12 133498407 133498707 -10287748 + AluY SINE Alu 1 300 -11 3618 132 53 36 chr12 133498707 133499164 -10287291 - L1PBa LINE L1 -4064 2798 2350 5190 140 155 61 chr12 133499164 133500571 -10285884 - pTR5 LTR ERV1 -1 2437 743 5430 176 89 14 chr12 133500571 133502599 -10283856 - L1PBa LINE L1 -4516 2347 6 1141 105 6 29 chr12 133502628 133502800 -10283655 - MLT2A1 LTR ERVL -83 361 194 1707 155 17 10 chr12 133502895 133503191 -10283264 + AluJb SINE Alu 1 298 -14 2314 64 0 0 chr12 133503396 133503679 -10282776 + AluSx SINE Alu 11 293 -19 454 69 0 0 chr12 133503821 133503893 -10282562 - AluSg1 SINE Alu 0 312 241 1427 80 11 0 chr12 133503893 133504081 -10282374 - AluSg1 SINE Alu -119 190 1 2301 104 7 0 chr12 133505397 133505694 -10280761 + AluSx SINE Alu 1 299 -13 389 265 212 0 chr12 133505833 133506022 -10280433 - MIR SINE MIR -32 230 2 1773 172 3 23 chr12 133506203 133506365 -10280090 - AluJo SINE Alu -15 297 142 2291 102 10 7 chr12 133506365 133506669 -10279786 - AluSx SINE Alu -7 305 1 1773 172 3 23 chr12 133506669 133506809 -10279646 - AluJo SINE Alu -170 142 1 1699 122 0 0 chr12 133507240 133507469 -10278986 + AluSq SINE Alu 83 311 -2 288 279 0 0 chr12 133507469 133507530 -10278925 + L3b LINE CR1 1520 1580 -3 213 293 0 0 chr12 133507659 133507717 -10278738 + A-rich Low_complexity Low_complexity 3 60 0 2354 60 0 57 chr12 133507970 133508286 -10278169 + AluSq SINE Alu 1 298 -15 760 208 11 71 chr12 133508292 133508475 -10277980 + FRAM SINE Alu 3 174 -2 333 225 19 45 chr12 133508493 133508623 -10277832 + L1ME3A LINE L1 5970 6095 -67 2288 108 10 3 chr12 133508826 133509132 -10277323 + AluSg SINE Alu 1 308 -2 2152 123 3 0 chr12 133510249 133510542 -10275913 + AluSx SINE Alu 1 294 -18 4760 56 8 0 chr12 133510754 133511340 -10275115 + LTR10C LTR ERV1 1 591 0 1557 148 21 136 chr12 133511378 133511708 -10274747 + AluJb SINE Alu 3 294 -8 911 182 31 0 chr12 133513094 133513253 -10273202 + FRAM SINE Alu 1 164 -2 1841 161 0 14 chr12 133513293 133513584 -10272871 + AluJb SINE Alu 1 287 -25 306 107 0 0 chr12 133513585 133513641 -10272814 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 2044 97 72 0 chr12 133513678 133513957 -10272498 + AluSx SINE Alu 1 299 -13 282 248 174 27 chr12 133514437 133514501 -10271954 - MER5B DNA MER1_type -1 177 124 2249 107 0 10 chr12 133514501 133514799 -10271656 + AluSg SINE Alu 2 296 -14 2109 121 3 10 chr12 133514801 133515106 -10271349 + AluSg SINE Alu 1 303 -7 282 248 174 27 chr12 133515106 133515187 -10271268 - MER5B DNA MER1_type -54 124 7 1543 139 121 15 chr12 133516238 133516511 -10269944 - AluSg1 SINE Alu -7 302 1 952 122 38 0 chr12 133516511 133516642 -10269813 - AluSq/x SINE Alu -176 136 1 2318 71 0 17 chr12 133516650 133516944 -10269511 - AluY SINE Alu -22 289 1 2182 96 7 0 chr12 133517234 133517542 -10268913 - AluSx SINE Alu 0 311 2 891 140 0 28 chr12 133517546 133517689 -10268766 - AluJo SINE Alu -173 139 1 248 150 0 33 chr12 133517691 133517751 -10268704 - L1M3 LINE L1 -355 5825 5768 269 283 75 9 chr12 133517865 133517971 -10268484 - MER58C DNA MER1_type 0 215 103 1499 198 3 45 chr12 133518112 133518426 -10268029 - AluJb SINE Alu -6 306 6 468 272 7 6 chr12 133518467 133518622 -10267833 - L1MD1 LINE L1 -33 6209 6075 447 222 0 33 chr12 133518671 133518761 -10267694 - FRAM/FAM SINE Alu -98 87 1 268 338 58 7 chr12 133518771 133518925 -10267530 + Charlie8 DNA MER1_type 59 220 -2197 21 0 0 0 chr12 133519153 133519174 -10267281 + AT_rich Low_complexity Low_complexity 1 21 0 2236 86 13 13 chr12 133519560 133519863 -10266592 + AluSx SINE Alu 1 303 -9 2192 119 0 3 chr12 133520797 133521092 -10265363 + AluSp SINE Alu 1 294 -19 2192 127 0 13 chr12 133521102 133521410 -10265045 + AluSx SINE Alu 1 304 -8 391 207 37 0 chr12 133522395 133522477 -10263978 - MER58B DNA MER1_type -6 335 251 1389 151 151 8 chr12 133522480 133522732 -10263723 - AluJb SINE Alu -12 290 3 328 178 144 0 chr12 133522733 133522823 -10263632 - MER58B DNA MER1_type -151 190 88 2387 82 10 3 chr12 133522827 133523132 -10263323 + AluSx SINE Alu 2 308 -4 200 361 0 0 chr12 133523348 133523409 -10263046 - L3 LINE CR1 -1274 303 243 2279 82 0 23 chr12 133523718 133524021 -10262434 + AluSc SINE Alu 1 296 -13 2546 73 0 9 chr12 133524072 133524387 -10262068 + AluSp SINE Alu 1 312 -1 1265 128 0 0 chr12 133525245 133525417 -10261038 + AluSg/x SINE Alu 128 299 -11 330 302 47 7 chr12 133529031 133529180 -10257275 + MIR3 SINE MIR 53 207 -1 328 289 78 72 chr12 133530829 133531189 -10255266 + L1M2 LINE L1 382 743 -6106 25 51 0 0 chr12 133531206 133531245 -10255210 + GC_rich Low_complexity Low_complexity 1 39 0 41 48 0 0 chr12 133531349 133531411 -10255044 + GC_rich Low_complexity Low_complexity 1 62 0 256 200 0 27 chr12 133531521 133531596 -10254859 + (CGG)n Simple_repeat Simple_repeat 2 74 0 43 81 0 0 chr12 133531760 133531859 -10254596 + GC_rich Low_complexity Low_complexity 1 99 0 34 65 0 0 chr12 133531887 133531949 -10254506 + GC_rich Low_complexity Low_complexity 1 62 0 397 214 51 31 chr12 133532322 133532420 -10254035 - L2 LINE L2 -16 3297 3198 1507 194 22 6 chr12 133532906 133533225 -10253230 - MER33 DNA MER1_type 0 324 1 794 173 0 40 chr12 133533395 133533545 -10252910 - FRAM SINE Alu -21 155 12 2067 99 10 10 chr12 133533613 133533905 -10252550 + AluSg SINE Alu 1 292 -18 2211 88 0 0 chr12 133533910 133534195 -10252260 + AluSx SINE Alu 15 299 -13 2142 121 3 3 chr12 133534206 133534519 -10251936 + AluSq SINE Alu 1 313 0 1107 181 0 0 chr12 133534522 133534688 -10251767 + AluJo/FRAM SINE Alu 129 294 -18 438 261 119 21 chr12 133534688 133535004 -10251451 + MLT1G1 LTR MaLR 161 522 -68 319 278 112 54 chr12 133535051 133535256 -10251199 + L1ME4a LINE L1 5646 5862 -300 2552 56 0 7 chr12 133535293 133535598 -10250857 + AluY SINE Alu 1 303 -8 447 276 107 52 chr12 133536223 133536643 -10249812 - MER65A LTR ERV1 0 445 3 * 570 231 64 6 chr12 133536643 133536790 -10249665 - MER3 DNA MER1_type -53 156 1 2017 153 3 3 chr12 133537530 133537825 -10248630 + AluJo SINE Alu 1 295 -17 1403 186 75 70 chr12 133538059 133538431 -10248024 - MLT1A2 LTR MaLR 0 374 1 1821 130 6 94 chr12 133538895 133539234 -10247221 - AluSq SINE Alu -4 309 1 200 143 71 0 chr12 133539800 133539842 -10246613 + T-rich Low_complexity Low_complexity 4 48 0 221 311 22 11 chr12 133540060 133540150 -10246305 + L2 LINE L2 3222 3312 -1 376 169 92 31 chr12 133540601 133540731 -10245724 + L1ME4a LINE L1 5984 6121 0 475 252 82 44 chr12 133541364 133541523 -10244932 + MIR SINE MIR 48 212 -50 234 195 39 52 chr12 133541986 133542063 -10244392 - MIR SINE MIR -108 154 79 602 98 0 0 chr12 133543608 133543690 -10242765 + AluS SINE Alu 2 83 -229 2276 95 3 16 chr12 133543767 133544072 -10242383 + AluSx SINE Alu 1 301 -11 722 301 63 3 chr12 133544085 133544417 -10242038 - L1ME4a LINE L1 -268 5853 5502 2290 106 3 3 chr12 133544475 133544778 -10241677 + AluSg SINE Alu 1 303 -7 998 141 37 6 chr12 133544830 133544993 -10241462 - AluSc SINE Alu -12 297 130 2045 133 10 7 chr12 133545007 133545301 -10241154 + AluSx SINE Alu 1 295 -17 1717 164 59 11 chr12 133545330 133545617 -10240838 - AluJo SINE Alu -11 301 1 2209 116 0 28 chr12 133545643 133545961 -10240494 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr12 133546071 133546107 -10240348 + AT_rich Low_complexity Low_complexity 1 36 0 1818 164 0 27 chr12 133546151 133546449 -10240006 + AluJo SINE Alu 1 290 -22 1368 109 0 0 chr12 133548699 133548883 -10237572 - AluSq SINE Alu 0 313 130 207 139 0 0 chr12 133548883 133548919 -10237536 + (TG)n Simple_repeat Simple_repeat 2 37 0 1008 113 0 0 chr12 133548928 133549061 -10237394 - AluSq SINE Alu -180 133 1 216 171 0 0 chr12 133550067 133550102 -10236353 + L2 LINE L2 3263 3297 -16 2075 112 17 10 chr12 133550147 133550443 -10236012 - AluSx SINE Alu -14 298 1 215 261 0 0 chr12 133551528 133551574 -10234881 + L2 LINE L2 3155 3200 -72 376 169 92 31 chr12 133552768 133552898 -10233557 + L1ME4a LINE L1 5984 6121 0 475 252 82 44 chr12 133553531 133553690 -10232765 + MIR SINE MIR 48 212 -50 234 195 39 52 chr12 133554153 133554230 -10232225 - MIR SINE MIR -108 154 79 877 162 100 162 chr12 133555774 133555934 -10230521 + AluJo SINE Alu 1 133 -169 2140 94 3 17 chr12 133555934 133556221 -10230234 + AluSx SINE Alu 1 283 -29 877 162 100 162 chr12 133556221 133556381 -10230074 + AluJo SINE Alu 133 301 -1 1945 140 0 0 chr12 133557236 133557501 -10228954 + AluSx SINE Alu 1 265 -47 370 132 15 0 chr12 133557909 133557977 -10228478 + L1MC4 LINE L1 7519 7587 -455 786 172 0 8 chr12 133558070 133558204 -10228251 + FLAM_C SINE Alu 1 133 -10 2376 95 20 0 chr12 133558472 133558776 -10227679 - AluSx SINE Alu -2 310 1 3530 172 101 67 chr12 133558901 133559785 -10226670 + MER21A LTR ERV1 1 914 -17 1067 313 144 34 chr12 133559809 133559976 -10226479 + L2 LINE L2 2038 2185 -1087 2469 55 7 0 chr12 133559976 133560269 -10226186 - AluY SINE Alu -15 296 2 1067 313 144 34 chr12 133560269 133560751 -10225704 + L2 LINE L2 2185 2809 -463 2492 50 0 10 chr12 133560751 133561051 -10225404 - AluY SINE Alu -14 297 1 1067 313 144 34 chr12 133561051 133561269 -10225186 + L2 LINE L2 2809 3002 -270 22 0 0 0 chr12 133561418 133561440 -10225015 + AT_rich Low_complexity Low_complexity 1 22 0 893 152 0 0 chr12 133561500 133561632 -10224823 - FLAM_C SINE Alu -1 132 1 451 268 16 24 chr12 133561927 133562054 -10224401 - MIR3 SINE MIR -5 203 78 2211 116 0 28 chr12 133562509 133562827 -10223628 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr12 133562937 133562973 -10223482 + AT_rich Low_complexity Low_complexity 1 36 0 1883 162 0 24 chr12 133563017 133563314 -10223141 + AluJo SINE Alu 1 290 -22 1368 109 0 0 chr12 133565570 133565754 -10220701 - AluSq SINE Alu 0 313 130 207 139 0 0 chr12 133565754 133565790 -10220665 + (TG)n Simple_repeat Simple_repeat 2 37 0 1008 113 0 0 chr12 133565798 133565931 -10220524 - AluSq SINE Alu -179 133 1 216 171 0 0 chr12 133566935 133566970 -10219485 + L2 LINE L2 3263 3297 -16 2112 112 16 10 chr12 133567015 133567320 -10219135 - AluSx SINE Alu -5 307 1 215 261 0 0 chr12 133568405 133568451 -10218004 + L2 LINE L2 3155 3200 -72 183 42 0 0 chr12 133569621 133569645 -10216810 + (CCG)n Simple_repeat Simple_repeat 3 26 0 31 76 0 0 chr12 133569692 133569758 -10216697 + GC_rich Low_complexity Low_complexity 1 66 0 26 0 0 0 chr12 133569770 133569796 -10216659 + GC_rich Low_complexity Low_complexity 1 26 0 49 43 0 0 chr12 133569903 133569973 -10216482 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr12 133570152 133570175 -10216280 + GC_rich Low_complexity Low_complexity 1 23 0 400 337 18 25 chr12 133571602 133571765 -10214690 + MIR3 SINE MIR 16 177 -31 335 257 134 70 chr12 133571933 133572120 -10214335 + L2 LINE L2 3054 3252 -20 191 231 0 0 chr12 133572122 133572161 -10214294 + MIR3 SINE MIR 140 178 -30 316 187 27 40 chr12 133572958 133573033 -10213422 - MIR SINE MIR -99 163 90 822 143 184 0 chr12 133573351 133573498 -10212957 + FRAM SINE Alu 1 172 -4 199 316 20 31 chr12 133573589 133573687 -10212768 - L2 LINE L2 -179 3093 2997 194 263 212 40 chr12 133573904 133574003 -10212452 - MIR SINE MIR -74 134 19 3533 95 4 14 chr12 133574173 133574187 -10212268 - L1PA13 LINE L1 0 6163 6150 2254 111 3 16 chr12 133574187 133574503 -10211952 - AluSq SINE Alu -1 312 1 3533 95 4 14 chr12 133574503 133574993 -10211462 - L1PA13 LINE L1 -13 6150 5664 477 176 0 0 chr12 133574993 133575067 -10211388 - FLAM SINE Alu -17 126 53 1122 114 18 0 chr12 133575623 133575789 -10210666 - FRAM SINE Alu -10 166 1 821 209 0 12 chr12 133575791 133575954 -10210501 + MER82 DNA MER2_type 24 184 -469 1140 68 0 0 chr12 133575957 133576089 -10210366 + AluSq/x SINE Alu 4 135 -178 2316 112 0 0 chr12 133576089 133576385 -10210070 + AluSc SINE Alu 1 296 -13 2129 226 17 9 chr12 133576385 133576846 -10209609 + MER82 DNA MER2_type 183 647 -6 204 146 24 0 chr12 133577669 133577710 -10208745 + GA-rich Low_complexity Low_complexity 2 43 0 298 180 0 0 chr12 133579534 133579584 -10206871 - MIR SINE MIR -108 154 105 256 269 122 44 chr12 133579598 133579745 -10206710 - MIR3 SINE MIR -67 141 2 2397 80 0 3 chr12 133581299 133581599 -10204856 - AluY SINE Alu -12 299 1 2031 154 7 0 chr12 133581656 133581962 -10204493 - AluJo SINE Alu -4 308 1 1795 173 18 57 chr12 133581968 133582367 -10204088 - L1MB7 LINE L1 -13 6167 5828 1991 126 32 3 chr12 133582367 133582652 -10203803 - AluJo SINE Alu -19 293 1 1795 173 18 57 chr12 133582652 133582745 -10203710 - L1MB7 LINE L1 -352 5828 5733 2309 122 0 3 chr12 133582898 133583209 -10203246 - AluSx SINE Alu -2 310 1 2197 118 14 0 chr12 133583907 133584204 -10202251 - AluY SINE Alu -10 301 1 2326 95 0 3 chr12 133584506 133584800 -10201655 - AluY SINE Alu -18 293 1 2137 177 9 34 chr12 133584869 133584963 -10201492 + L1MB1 LINE L1 5743 5838 -330 905 156 81 12 chr12 133584963 133585123 -10201332 + FAM SINE Alu 4 174 -1 2137 177 9 34 chr12 133585123 133585464 -10200991 + L1MB1 LINE L1 5838 6167 -1 354 264 221 7 chr12 133585911 133586051 -10200404 - MIR SINE MIR -70 192 23 1936 112 8 0 chr12 133586485 133586744 -10199711 + AluY SINE Alu 30 290 -21 760 100 10 0 chr12 133586839 133586939 -10199516 + AluS SINE Alu 2 102 -210 303 28 0 0 chr12 133586993 133587029 -10199426 + (TG)n Simple_repeat Simple_repeat 2 37 0 405 310 21 21 chr12 133587348 133587490 -10198965 - MIR3 SINE MIR -62 146 5 3164 152 14 67 chr12 133587599 133588289 -10198166 + L1MB4 LINE L1 5493 6146 -34 364 263 200 12 chr12 133588812 133588972 -10197483 + MIR SINE MIR 40 229 -33 1935 221 45 7 chr12 133589279 133589726 -10196729 - MLT1C LTR MaLR 0 467 4 2437 47 0 0 chr12 133590032 133590306 -10196149 - AluY SINE Alu -21 290 17 239 370 42 17 chr12 133590378 133590497 -10195958 + MIR3 SINE MIR 81 202 -6 1446 161 5 5 chr12 133590699 133590923 -10195532 + AluJo SINE Alu 84 307 -5 2588 37 7 7 chr12 133591237 133591533 -10194922 - AluY SINE Alu -15 296 1 786 157 16 0 chr12 133591544 133591665 -10194790 - FLAM_A SINE Alu -10 123 1 2137 110 7 7 chr12 133591676 133591966 -10194489 - AluSq SINE Alu -23 290 1 2114 128 3 7 chr12 133592046 133592351 -10194104 - AluY SINE Alu -7 304 1 2704 45 0 0 chr12 133593783 133594091 -10192364 - AluY SINE Alu -3 308 1 767 173 31 0 chr12 133594334 133594461 -10191994 + FLAM_C SINE Alu 3 133 0 527 118 0 13 chr12 133594641 133594717 -10191738 + AluSg/x SINE Alu 176 250 -62 1074 178 30 0 chr12 133594719 133594921 -10191534 + AluJo SINE Alu 87 294 -18 2251 113 3 0 chr12 133595825 133596117 -10190338 + AluSp SINE Alu 3 295 -18 1781 156 0 4 chr12 133597353 133597623 -10188832 + AluSx SINE Alu 1 269 -43 2236 96 3 13 chr12 133597799 133598102 -10188353 + AluSg SINE Alu 3 302 -8 943 94 0 0 chr12 133598201 133598318 -10188137 - AluSg SINE Alu -183 127 11 1331 87 16 11 chr12 133598967 133599150 -10187305 - AluSp SINE Alu -129 184 1 1364 88 0 0 chr12 133599573 133599743 -10186712 - AluSc SINE Alu -8 301 132 2589 65 0 0 chr12 133599743 133600050 -10186405 - AluY SINE Alu -4 307 1 909 166 114 107 chr12 133601550 133601659 -10184796 + AluJo SINE Alu 21 128 -184 2203 118 0 25 chr12 133601659 133601980 -10184475 + AluSq SINE Alu 1 313 0 909 166 114 107 chr12 133601980 133602160 -10184295 + AluJo SINE Alu 128 312 0 1874 119 73 3 chr12 133602285 133602571 -10183884 + AluSx SINE Alu 1 306 -6 1870 144 7 3 chr12 133603002 133603307 -10183148 + AluJo SINE Alu 1 306 -6 1286 52 0 0 chr12 133604050 133604203 -10182252 + AluY SINE Alu 1 153 -158 1716 126 3 111 chr12 133604663 133604810 -10181645 + AluSx SINE Alu 1 94 -208 1803 148 31 0 chr12 133604810 133605100 -10181355 + AluSx SINE Alu 1 299 -13 1716 126 3 111 chr12 133605100 133605285 -10181170 + AluSx SINE Alu 94 297 -5 352 106 45 0 chr12 133605290 133605356 -10181099 + L1 LINE L1 4929 4997 -1149 1724 129 8 0 chr12 133605356 133605611 -10180844 + AluSx SINE Alu 37 293 -19 2355 61 3 16 chr12 133605615 133605926 -10180529 + AluY SINE Alu 1 307 -4 2182 97 3 3 chr12 133605931 133606240 -10180215 + AluSp SINE Alu 1 309 -4 2033 115 3 0 chr12 133606246 133606541 -10179914 + AluY SINE Alu 1 296 -15 1649 163 14 0 chr12 133606543 133606831 -10179624 + AluSx SINE Alu 1 292 -20 1527 82 10 5 chr12 133607281 133607487 -10178968 + AluSq SINE Alu 1 207 -106 1085 68 7 0 chr12 133607489 133607635 -10178820 + AluSp/q SINE Alu 161 307 -6 1595 189 35 32 chr12 133607652 133607991 -10178464 + MER58B DNA MER1_type 2 341 0 2048 134 0 3 chr12 133608011 133608324 -10178131 + AluSx SINE Alu 1 312 0 2224 72 13 19 chr12 133608332 133608639 -10177816 + AluY SINE Alu 1 305 -6 1213 172 9 0 chr12 133608667 133608882 -10177573 + AluJo SINE Alu 1 217 -95 1710 152 7 7 chr12 133609131 133609428 -10177027 + AluJb SINE Alu 1 297 -15 276 231 115 0 chr12 133609520 133609598 -10176857 - Charlie7 DNA MER1_type -2518 94 8 648 220 0 0 chr12 133609659 133609777 -10176678 + 5S rRNA rRNA 2 119 -2 1846 132 7 13 chr12 133609835 133610145 -10176310 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr12 133610335 133610359 -10176096 + AT_rich Low_complexity Low_complexity 1 24 0 2170 93 0 3 chr12 133610484 133610775 -10175680 - AluSc SINE Alu -19 290 1 1615 112 27 39 chr12 133610776 133610962 -10175493 + Tigger5 DNA MER2_type 2063 2247 -76 1615 184 14 3 chr12 133610962 133611255 -10175200 - AluJb SINE Alu -16 296 1 1615 112 27 39 chr12 133611255 133611328 -10175127 + Tigger5 DNA MER2_type 2247 2319 -4 1094 247 125 9 chr12 133611333 133611677 -10174778 - L2 LINE L2 -465 2849 2466 1776 144 17 10 chr12 133611877 133612176 -10174279 + AluJb SINE Alu 1 301 -11 2081 116 3 6 chr12 133612582 133612893 -10173562 + AluSg SINE Alu 1 310 0 1703 116 4 0 chr12 133612903 133613144 -10173311 + AluSq SINE Alu 42 283 -30 304 196 0 0 chr12 133613158 133613209 -10173246 + L1MC4 LINE L1 6653 6703 -1339 32 26 0 0 chr12 133613338 133613377 -10173078 + AT_rich Low_complexity Low_complexity 1 39 0 310 300 122 10 chr12 133613614 133613895 -10172560 + L2 LINE L2 2730 3040 -273 373 284 134 0 chr12 133614004 133614131 -10172324 + MIR SINE MIR 44 187 -75 1819 97 0 103 chr12 133614132 133614338 -10172117 - AluSx SINE Alu -2 310 149 2411 63 3 3 chr12 133614338 133614641 -10171814 - AluY SINE Alu -8 303 1 1819 97 0 103 chr12 133614641 133614763 -10171692 - AluSx SINE Alu -163 149 16 444 207 220 0 chr12 133614783 133614933 -10171522 + MER20B DNA MER1_type 1 183 -600 1304 220 65 0 chr12 133615013 133615322 -10171133 + MER20B DNA MER1_type 389 717 -66 2298 80 0 7 chr12 133615367 133615667 -10170788 + AluY SINE Alu 1 298 -13 910 137 0 13 chr12 133615707 133615860 -10170595 + AluSp/q SINE Alu 155 305 -8 561 174 9 52 chr12 133616557 133616672 -10169783 - FLAM_C SINE Alu -32 111 2 1862 114 4 18 chr12 133616749 133617022 -10169433 - AluSx SINE Alu -43 269 1 21 57 0 0 chr12 133617211 133617246 -10169209 + AT_rich Low_complexity Low_complexity 1 35 0 2244 88 10 7 chr12 133617842 133618150 -10168305 + AluSx SINE Alu 1 309 -3 2014 103 28 3 chr12 133618153 133618444 -10168011 + AluSp SINE Alu 1 298 -15 581 158 142 24 chr12 133618482 133618609 -10167846 - FRAM SINE Alu -6 170 29 1392 138 18 0 chr12 133619106 133619324 -10167131 + AluSq SINE Alu 25 246 -67 1635 100 0 0 chr12 133619460 133619680 -10166775 - AluSg SINE Alu -90 220 1 2306 65 0 3 chr12 133619690 133619984 -10166471 - AluY SINE Alu -18 293 1 599 194 0 0 chr12 133620027 133620125 -10166330 + FLAM_C SINE Alu 29 126 -17 1440 144 0 65 chr12 133620532 133620652 -10165803 - AluSx SINE Alu -56 256 130 2195 108 0 0 chr12 133620652 133620959 -10165496 - AluY SINE Alu -4 307 1 2200 79 0 0 chr12 133620963 133621272 -10165183 - AluY SINE Alu 0 309 1 1440 144 0 65 chr12 133621272 133621408 -10165047 - AluSx SINE Alu -185 127 11 761 171 0 0 chr12 133621427 133621550 -10164905 - FLAM_C SINE Alu -9 124 2 1559 128 62 18 chr12 133621804 133622102 -10164353 + AluSq SINE Alu 1 310 0 198 0 0 0 chr12 133622936 133622958 -10163497 + (T)n Simple_repeat Simple_repeat 1 22 0 1822 89 118 7 chr12 133623006 133623276 -10163179 - AluSx SINE Alu -7 305 6 1466 101 0 0 chr12 133623388 133623586 -10162869 + AluSc SINE Alu 106 303 -6 210 154 0 0 chr12 133624493 133624532 -10161923 + (TG)n Simple_repeat Simple_repeat 2 40 0 423 119 0 0 chr12 133625440 133625507 -10160948 + (T)n Simple_repeat Simple_repeat 1 67 0 871 113 0 14 chr12 133626779 133626921 -10159534 + AluJb SINE Alu 1 140 -172 814 122 0 0 chr12 133628364 133628479 -10157976 - AluSq SINE Alu -65 248 134 2179 96 3 0 chr12 133628480 133628772 -10157683 - AluSc SINE Alu -16 293 1 1464 138 171 0 chr12 133628795 133629041 -10157414 - AluSx SINE Alu -14 288 1 867 132 0 22 chr12 133629052 133629188 -10157267 - FLAM_C SINE Alu 0 133 1 2006 109 10 0 chr12 133630375 133630668 -10155787 - AluSp SINE Alu -17 296 1 1741 151 0 33 chr12 133630670 133630837 -10155618 - AluJo SINE Alu -18 294 140 1978 149 3 0 chr12 133630837 133631146 -10155309 - AluSx SINE Alu -2 310 1 1741 151 0 33 chr12 133631146 133631282 -10155173 - AluJo SINE Alu -172 140 1 794 258 105 73 chr12 133631609 133632008 -10154447 + MLT1J LTR MaLR 97 508 -3 838 262 33 0 chr12 133632115 133632325 -10154130 - AluJo SINE Alu -24 288 72 1651 155 17 3 chr12 133632947 133633238 -10153217 + AluSx SINE Alu 1 295 -17 1604 122 107 0 chr12 133633694 133633964 -10152491 - AluSq SINE Alu -14 299 1 1977 114 17 3 chr12 133634035 133634332 -10152123 - AluSx SINE Alu -11 301 1 1870 144 7 3 chr12 133634522 133634827 -10151628 - AluJo SINE Alu -6 306 1 2091 109 3 0 chr12 133635055 133635357 -10151098 - AluSx SINE Alu -9 303 1 1758 160 3 0 chr12 133635672 133635965 -10150490 + AluSx SINE Alu 3 296 -16 426 198 38 19 chr12 133635971 133636077 -10150378 - L1MC5 LINE L1 -54 7907 7800 2193 102 0 7 chr12 133636162 133636467 -10149988 + AluSc SINE Alu 1 303 -6 601 206 231 19 chr12 133636468 133636585 -10149870 - MER33 DNA MER1_type -2282 303 212 1792 157 3 0 chr12 133636585 133636878 -10149577 - AluSx SINE Alu -18 294 1 601 206 231 19 chr12 133636878 133637025 -10149430 - MER33 DNA MER1_type -2373 212 1 407 267 193 0 chr12 133637025 133637175 -10149280 + MER5A DNA MER1_type 11 189 0 801 153 0 0 chr12 133637257 133637375 -10149080 - AluJb SINE Alu -193 119 2 2143 193 41 13 chr12 133637413 133637880 -10148575 + L1 LINE L1 2226 2705 -3441 2347 54 0 35 chr12 133639247 133639561 -10146894 - AluY SINE Alu -8 303 1 180 0 0 0 chr12 133640193 133640213 -10146242 + (A)n Simple_repeat Simple_repeat 1 20 0 1262 124 0 5 chr12 133640603 133640833 -10145622 + AluY SINE Alu 89 317 0 2101 103 7 0 chr12 133640853 133641143 -10145312 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr12 133641168 133641190 -10145265 + AT_rich Low_complexity Low_complexity 1 22 0 1134 142 22 0 chr12 133641222 133641405 -10145050 + AluJo SINE Alu 120 306 -6 2371 153 41 41 chr12 133641405 133641888 -10144567 + L1MB7 LINE L1 5557 6039 -145 29 0 0 0 chr12 133641888 133641917 -10144538 + AT_rich Low_complexity Low_complexity 1 29 0 216 155 52 17 chr12 133642569 133642627 -10143828 + T-rich Low_complexity Low_complexity 6 65 0 1558 173 3 10 chr12 133643549 133643856 -10142599 + AluJb SINE Alu 1 305 -7 1964 122 7 10 chr12 133644740 133645035 -10141420 + AluSg SINE Alu 3 296 -14 1198 155 5 27 chr12 133645248 133645467 -10140988 - AluSg/x SINE Alu -13 299 86 35 41 0 0 chr12 133645683 133645732 -10140723 + GC_rich Low_complexity Low_complexity 1 49 0 891 185 0 17 chr12 133646073 133646246 -10140209 + AluSg/x SINE Alu 141 310 0 2169 57 50 0 chr12 133646248 133646527 -10139928 + AluSc SINE Alu 3 295 -14 964 136 95 180 chr12 133646590 133646906 -10139549 - AluJo SINE Alu -11 291 3 207 88 0 0 chr12 133646908 133646942 -10139513 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr12 133647488 133647514 -10138941 + AT_rich Low_complexity Low_complexity 1 26 0 187 87 0 0 chr12 133649007 133649030 -10137425 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1279 158 16 35 chr12 133649042 133649296 -10137159 - AluJb SINE Alu -44 268 20 211 255 0 0 chr12 133649373 133649420 -10137035 + A-rich Low_complexity Low_complexity 1 47 0 245 230 11 23 chr12 133649431 133649518 -10136937 + C-rich Low_complexity Low_complexity 4 89 0 255 274 17 29 chr12 133649582 133649757 -10136698 + (CACCC)n Simple_repeat Simple_repeat 5 177 0 268 175 22 71 chr12 133649785 133649968 -10136487 + C-rich Low_complexity Low_complexity 1 174 0 212 232 72 14 chr12 133649973 133650042 -10136413 + (CCCCAA)n Simple_repeat Simple_repeat 5 77 0 200 327 0 0 chr12 133650050 133650105 -10136350 + C-rich Low_complexity Low_complexity 6 60 0 1396 159 26 0 chr12 133850243 133850469 -9935986 - AluJo SINE Alu -75 237 6 1122 133 10 10 chr12 133850471 133850674 -9935781 + MER6 DNA MER2_type 663 865 0 21 0 0 0 chr12 133850826 133850847 -9935608 + AT_rich Low_complexity Low_complexity 1 21 0 825 231 6 16 chr12 133851101 133851283 -9935172 + MIR SINE MIR 80 259 -3 380 272 120 101 chr12 133851427 133851607 -9934848 + L2 LINE L2 2507 2682 -632 2147 155 0 0 chr12 133851607 133851917 -9934538 - AluSx SINE Alu -2 310 1 380 272 120 101 chr12 133851917 133852104 -9934351 + L2 LINE L2 2682 2881 -433 1992 153 3 13 chr12 133852135 133852442 -9934013 - AluJb SINE Alu -6 306 3 1057 147 32 0 chr12 133852443 133852599 -9933856 - FRAM SINE Alu -16 160 1 5574 109 29 5 chr12 133852937 133853698 -9932757 + LTR17 LTR ERV1 2 780 0 4785 87 20 25 chr12 133853698 133854391 -9932064 + HERV17 LTR ERV1 2 691 -7935 2585 75 0 0 chr12 133854827 133855133 -9931322 + AluSx SINE Alu 2 307 -5 3299 60 0 36 chr12 133855317 133855766 -9930689 + HERV17 LTR ERV1 1537 1969 -6657 * 41344 56 4 9 chr12 133855755 133856750 -9929705 + HERV17 LTR ERV1 2289 3287 -5339 2425 77 0 0 chr12 133856750 133857047 -9929408 + AluY SINE Alu 1 297 -14 41344 56 4 9 chr12 133857047 133860393 -9926062 + HERV17 LTR ERV1 3287 6602 -2024 2292 103 0 7 chr12 133860393 133860703 -9925752 + AluSx SINE Alu 1 308 -4 41344 56 4 9 chr12 133860703 133861646 -9924809 + HERV17 LTR ERV1 6602 7548 -1078 2284 65 0 0 chr12 133861636 133861928 -9924527 + HERV17 LTR ERV1 8335 8626 0 * 5145 83 1 38 chr12 133861928 133862254 -9924201 + LTR17 LTR ERV1 1 337 -443 5008 25 0 0 chr12 133862254 133862824 -9923631 - L1PA3 LINE L1 -1 6154 5585 5145 83 1 38 chr12 133862824 133863256 -9923199 + LTR17 LTR ERV1 337 731 -49 255 175 0 0 chr12 133863340 133863397 -9923058 + L1MC5 LINE L1 7724 7780 -181 2075 122 4 0 chr12 133863404 133863683 -9922772 + AluSx SINE Alu 1 280 -32 237 65 0 0 chr12 133863684 133863715 -9922740 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 811 139 146 32 chr12 133863803 133863961 -9922494 + FRAM SINE Alu 1 174 -2 2201 131 0 3 chr12 133864322 133864635 -9921820 - AluSx SINE Alu 0 312 1 1998 123 14 14 chr12 133864638 133864965 -9921490 - AluJo SINE Alu 0 312 1 2351 105 3 0 chr12 133865224 133865528 -9920927 - AluSx SINE Alu -7 305 1 952 138 0 14 chr12 133865539 133865677 -9920778 - AluJo SINE Alu -176 136 1 1622 162 37 30 chr12 133866013 133866310 -9920145 - AluJb SINE Alu -13 299 1 2363 90 0 7 chr12 133866489 133866790 -9919665 + AluSc SINE Alu 1 299 -10 1093 149 0 0 chr12 133867324 133867485 -9918970 + FRAM SINE Alu 1 160 -16 1969 122 4 0 chr12 133867485 133867747 -9918708 + AluJb SINE Alu 6 268 -44 382 299 57 85 chr12 133867755 133868036 -9918419 - L1ME4a LINE L1 -48 6073 5801 1736 135 4 11 chr12 133868046 133868225 -9918230 - AluSq SINE Alu -1 312 134 2111 83 75 0 chr12 133868225 133868503 -9917952 - AluSx SINE Alu -13 299 1 1736 135 4 11 chr12 133868503 133868589 -9917866 - AluSq SINE Alu -179 134 49 225 344 0 0 chr12 133868590 133868712 -9917743 - L1ME4a LINE L1 -337 5825 5704 2532 57 0 0 chr12 133868908 133869205 -9917250 - AluY SINE Alu -13 298 2 2202 106 0 3 chr12 133869224 133869516 -9916939 - AluSx SINE Alu -21 291 1 306 148 19 0 chr12 133869559 133869613 -9916842 + L1ME LINE L1 5524 5578 -592 2563 139 5 36 chr12 133869614 133870053 -9916402 + MER65A LTR ERV1 1 425 -20 1960 56 0 4 chr12 133870053 133870285 -9916170 + AluY SINE Alu 68 298 -13 738 160 80 0 chr12 133870296 133870421 -9916034 + AluJo SINE Alu 1 135 -177 2012 148 0 28 chr12 133870421 133870738 -9915717 + AluSx SINE Alu 1 308 -4 2190 92 26 0 chr12 133870823 133871126 -9915329 - AluSp SINE Alu 0 313 3 337 239 199 15 chr12 133871385 133871586 -9914869 - L1MC5 LINE L1 -87 7874 7637 2256 107 0 7 chr12 133871992 133872291 -9914164 - AluSc SINE Alu -8 301 5 746 191 68 0 chr12 133872362 133872524 -9913931 + MER58B DNA MER1_type 167 339 -2 218 328 0 0 chr12 133872535 133872596 -9913859 - L2 LINE L2 -556 2758 2698 242 242 33 22 chr12 133872628 133872719 -9913736 - LTR67 LTR ERVL -9 548 457 369 307 42 42 chr12 133872891 133873057 -9913398 - MLT1K LTR MaLR -411 177 12 313 257 167 68 chr12 133873135 133873327 -9913128 + MLT1J1 LTR MaLR 7 179 -230 225 0 0 0 chr12 133873327 133873352 -9913103 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1917 140 0 7 chr12 133873356 133873641 -9912814 - AluSx SINE Alu -29 283 1 313 257 167 68 chr12 133873641 133873809 -9912646 + MLT1J1 LTR MaLR 181 408 -1 1113 280 103 21 chr12 133873816 133874194 -9912261 - MLT1J2 LTR MaLR -21 429 21 2038 122 0 73 chr12 133874249 133874576 -9911879 + AluJb SINE Alu 1 303 -9 1993 164 10 0 chr12 133874578 133874882 -9911573 + AluJb SINE Alu 3 309 -3 831 197 0 0 chr12 133874994 133875136 -9911319 + FLAM_C SINE Alu 1 142 -1 255 125 0 0 chr12 133875140 133875180 -9911275 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 390 268 128 40 chr12 133875180 133875430 -9911025 + L1MC/D LINE L1 5436 5707 -2101 2286 105 0 0 chr12 133875430 133875724 -9910731 - AluSq SINE Alu -15 298 5 839 226 11 6 chr12 133875732 133875909 -9910546 - AluJ SINE Alu -17 295 118 528 136 0 0 chr12 133875968 133876056 -9910399 + (CTACT)n Simple_repeat Simple_repeat 1 88 0 276 146 0 117 chr12 133876057 133876160 -9910295 - AluJ SINE Alu -190 112 22 528 218 74 119 chr12 133876794 133876865 -9909590 - MLT1C LTR MaLR -8 459 386 1710 143 0 62 chr12 133876865 133876987 -9909468 + AluJb SINE Alu 13 141 -171 2123 143 0 3 chr12 133876987 133877294 -9909161 + AluJb SINE Alu 1 306 -6 1710 143 0 62 chr12 133877294 133877501 -9908954 + AluJb SINE Alu 141 312 0 528 218 74 119 chr12 133877501 133877672 -9908783 - MLT1C LTR MaLR -81 386 228 1412 158 5 0 chr12 133877673 133877888 -9908567 - AluJo SINE Alu -10 302 87 522 208 26 32 chr12 133877892 133878046 -9908409 - MLT1C LTR MaLR -272 233 81 2479 76 0 3 chr12 133878070 133878371 -9908084 - AluSc SINE Alu -9 300 1 220 217 150 0 chr12 133878476 133878536 -9907919 - MIR SINE MIR -146 116 48 2270 115 0 13 chr12 133878857 133879171 -9907284 - AluSx SINE Alu -2 310 1 1488 138 55 103 chr12 133879171 133879482 -9906973 - AluJo SINE Alu -16 296 1 1037 121 155 40 chr12 133879700 133879874 -9906581 - AluSx SINE Alu -116 196 3 1939 120 62 14 chr12 133879922 133880213 -9906242 - AluSx SINE Alu -7 305 1 2263 114 0 7 chr12 133880223 133880522 -9905933 - AluY SINE Alu -14 297 1 634 189 11 40 chr12 133880703 133880878 -9905577 - AluSq SINE Alu 0 313 144 186 133 0 0 chr12 133881094 133881124 -9905331 + (A)n Simple_repeat Simple_repeat 1 30 0 2210 125 3 0 chr12 133881136 133881440 -9905015 + AluSx SINE Alu 1 305 -7 684 247 57 0 chr12 133881533 133881691 -9904764 + MIR SINE MIR 16 182 -80 401 180 33 57 chr12 133881691 133881753 -9904702 - Charlie1 DNA MER1_type 0 2761 2701 1960 136 7 0 chr12 133881753 133882076 -9904379 - AluSx SINE Alu 0 325 1 401 180 33 57 chr12 133882076 133882134 -9904321 - Charlie1 DNA MER1_type -60 2701 2643 863 137 43 7 chr12 133882134 133882273 -9904182 + FRAM SINE Alu 23 166 -10 363 78 0 0 chr12 133882273 133882324 -9904131 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 357 214 22 0 chr12 133882722 133882810 -9903645 + LTR33 LTR ERVL 360 449 -72 398 261 142 0 chr12 133882810 133882944 -9903511 - MER63A DNA MER1_type 0 210 58 1541 154 0 53 chr12 133883093 133883359 -9903096 - AluJo SINE Alu -60 252 1 2056 134 37 0 chr12 133883368 133883666 -9902789 - AluSx SINE Alu -3 309 1 363 211 179 77 chr12 133883700 133883856 -9902599 - MIR SINE MIR -1 261 90 24 0 0 0 chr12 133883906 133883930 -9902525 + AT_rich Low_complexity Low_complexity 1 24 0 1805 128 0 4 chr12 133884060 133884317 -9902138 + AluSx SINE Alu 20 275 -37 395 168 20 20 chr12 133884317 133884466 -9901989 + (TAAA)n Simple_repeat Simple_repeat 2 150 0 1109 175 0 10 chr12 133884467 133884661 -9901794 - AluSx SINE Alu -21 291 100 791 94 9 0 chr12 133885368 133885474 -9900981 - AluSx SINE Alu -204 108 2 1999 107 40 20 chr12 133885606 133885904 -9900551 + AluSg SINE Alu 1 304 -6 1767 177 3 7 chr12 133885917 133886216 -9900239 + AluJb SINE Alu 1 298 -14 188 100 25 0 chr12 133887331 133887371 -9899084 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 225 108 0 0 chr12 133887428 133887465 -9898990 + (T)n Simple_repeat Simple_repeat 1 37 0 385 196 173 77 chr12 133888308 133888412 -9898043 + MIR SINE MIR 73 200 -62 1735 136 66 25 chr12 133888412 133888576 -9897879 - AluSx SINE Alu -14 298 115 2350 93 13 6 chr12 133888576 133888887 -9897568 - AluSq SINE Alu 0 313 1 1735 136 66 25 chr12 133888887 133889008 -9897447 - AluSx SINE Alu -197 115 1 385 196 173 77 chr12 133889008 133889071 -9897384 + MIR SINE MIR 200 256 -6 275 274 99 21 chr12 133889209 133889349 -9897106 + MIR3 SINE MIR 2 150 -80 748 231 54 54 chr12 133889425 133889646 -9896809 + MIR SINE MIR 42 262 0 793 157 0 30 chr12 133889754 133889888 -9896567 - FLAM_C SINE Alu -13 130 1 2191 96 40 17 chr12 133889890 133890191 -9896264 - AluSg SINE Alu -2 308 1 599 174 167 7 chr12 133890219 133890363 -9896092 + AluSg/x SINE Alu 135 301 -11 1893 101 120 0 chr12 133890418 133890685 -9895770 - AluSg SINE Alu 0 300 2 2038 140 3 0 chr12 133891018 133891303 -9895152 - AluJo SINE Alu -26 286 1 376 343 72 30 chr12 133891413 133891579 -9894876 + MIR SINE MIR 9 181 -81 2153 101 4 0 chr12 133891779 133892056 -9894399 + AluSg SINE Alu 1 278 -32 248 143 0 0 chr12 133892068 133892110 -9894345 + Alu SINE Alu 126 167 -133 4544 111 108 125 chr12 133892113 133893541 -9892914 - pTR5 LTR ERV1 0 2438 743 2147 80 0 11 chr12 133893541 133893815 -9892640 + AluY SINE Alu 31 301 -10 515 216 22 14 chr12 133893996 133894135 -9892320 + MER104 DNA Tc2 4 143 -37 1929 147 3 19 chr12 133894899 133895211 -9891244 + AluJb SINE Alu 1 307 -5 2475 67 0 3 chr12 133895222 133895521 -9890934 + AluY SINE Alu 3 300 -11 222 91 0 0 chr12 133895523 133895556 -9890899 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2032 160 0 0 chr12 133895879 133896186 -9890269 + AluSx SINE Alu 1 307 -5 1015 283 65 77 chr12 133896198 133896450 -9890005 + L2 LINE L2 2639 2892 -421 2264 94 3 7 chr12 133896450 133896749 -9889706 - AluSp SINE Alu -15 298 1 1015 283 65 77 chr12 133896749 133896812 -9889643 + L2 LINE L2 2892 2954 -359 1517 156 73 45 chr12 133896812 133897100 -9889355 - AluJo SINE Alu -16 296 1 1015 283 65 77 chr12 133897100 133897476 -9888979 + L2 LINE L2 2954 3312 -1 1716 105 161 4 chr12 133897614 133897881 -9888574 - AluSg1 SINE Alu 0 309 1 2348 65 0 45 chr12 133897881 133898188 -9888267 - AluY SINE Alu -17 294 1 1106 137 69 0 chr12 133898465 133898640 -9887815 - AluSg/x SINE Alu -6 306 120 827 122 0 0 chr12 133898649 133898772 -9887683 - AluSg/x SINE Alu -2 310 188 1558 92 0 48 chr12 133898772 133898884 -9887571 - AluSc SINE Alu -92 217 120 2440 79 0 3 chr12 133898884 133899189 -9887266 - AluY SINE Alu -6 305 2 1558 92 0 48 chr12 133899189 133899304 -9887151 - AluSc SINE Alu -189 120 1 2270 81 3 0 chr12 133899306 133899602 -9886853 - AluSq SINE Alu -16 297 1 349 294 9 28 chr12 133899720 133899829 -9886626 + MIR SINE MIR 35 141 -67 226 219 0 0 chr12 133899852 133899893 -9886562 + L2 LINE L2 3214 3254 -18 1867 136 27 7 chr12 133899907 133900202 -9886253 - AluSx SINE Alu -11 301 1 2269 89 20 0 chr12 133900530 133900833 -9885622 - AluSx SINE Alu -3 309 1 1105 142 0 47 chr12 133900857 133901047 -9885408 - AluJo SINE Alu -1 311 131 2111 107 17 0 chr12 133901106 133901397 -9885058 + AluSg SINE Alu 1 296 -14 647 211 0 31 chr12 133901403 133901531 -9884924 - AluJo SINE Alu -187 125 2 716 248 96 2 chr12 133901545 133901745 -9884710 + MIR SINE MIR 18 232 -30 2075 118 3 0 chr12 133902069 133902366 -9884089 - AluSx SINE Alu -14 298 1 244 198 12 62 chr12 133902487 133902521 -9883934 - L1M4 LINE L1 -1947 4199 4165 2361 71 0 0 chr12 133902521 133902818 -9883637 - AluY SINE Alu -14 297 1 244 198 12 62 chr12 133902818 133902864 -9883591 - L1M4 LINE L1 -1981 4165 4123 350 289 94 0 chr12 133902873 133903001 -9883454 + MIR SINE MIR 74 213 -49 365 254 10 78 chr12 133903002 133903195 -9883260 - L2 LINE L2 -7 3306 3127 2292 94 3 0 chr12 133903197 133903496 -9882959 - AluSx SINE Alu -12 300 1 432 217 11 0 chr12 133903497 133903589 -9882866 + MLT1K LTR MaLR 492 584 -4 2210 77 19 16 chr12 133903730 133904040 -9882415 - AluY SINE Alu 0 311 1 2162 115 0 7 chr12 133904040 133904344 -9882111 - AluSq SINE Alu -11 302 1 2198 94 7 7 chr12 133904520 133904817 -9881638 - AluSx SINE Alu -15 297 1 31 54 0 33 chr12 133904836 133904851 -9881604 + AT_rich Low_complexity Low_complexity 1 15 -74 744 195 0 0 chr12 133904851 133904974 -9881481 - FLAM_C SINE Alu -10 123 1 31 54 0 33 chr12 133904974 133905017 -9881438 + AT_rich Low_complexity Low_complexity 15 57 -32 1920 133 3 13 chr12 133905017 133905317 -9881138 - AluSx SINE Alu -15 297 1 31 54 0 33 chr12 133905317 133905349 -9881106 + AT_rich Low_complexity Low_complexity 57 89 0 2338 68 6 6 chr12 133905456 133905767 -9880688 - AluY SINE Alu 0 311 1 881 177 19 0 chr12 133905787 133905945 -9880510 - FAM SINE Alu -7 42 1 990 279 56 32 chr12 133906019 133906395 -9880060 - MLT1G1 LTR MaLR -210 385 1 2012 122 3 10 chr12 133906412 133906708 -9879747 - AluSx SINE Alu -18 294 1 2381 69 0 0 chr12 133906995 133907299 -9879156 - AluY SINE Alu -7 304 1 445 312 113 22 chr12 133907513 133907744 -9878711 + MIR SINE MIR 3 254 -8 236 232 89 0 chr12 133907789 133907845 -9878610 - MER103 DNA DNA -104 62 2 755 127 0 17 chr12 133908008 133908126 -9878329 - FLAM_C SINE Alu 0 143 28 2161 93 6 10 chr12 133908145 133908456 -9877999 - AluSg SINE Alu 0 310 1 186 103 0 0 chr12 133908458 133908487 -9877968 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1234 131 0 0 chr12 133908487 133908662 -9877793 - AluSg/x SINE Alu -29 281 107 1588 146 57 11 chr12 133908696 133908976 -9877479 + AluJo SINE Alu 1 293 -19 2301 87 0 3 chr12 133908993 133909304 -9877151 + AluY SINE Alu 1 310 -1 1861 99 51 0 chr12 133909571 133909865 -9876590 - AluSq SINE Alu 0 308 1 705 133 9 0 chr12 133909866 133909971 -9876484 - AluSq/x SINE Alu -167 145 40 2116 188 25 9 chr12 133909972 133910408 -9876047 + L1MB3 LINE L1 5700 6142 -41 2337 62 0 10 chr12 133910408 133910712 -9875743 + AluY SINE Alu 1 301 -10 2136 106 0 0 chr12 133910739 133911032 -9875423 + AluSx SINE Alu 1 293 -19 1885 127 3 0 chr12 133911039 133911323 -9875132 + AluSq SINE Alu 14 298 -15 259 184 20 0 chr12 133911346 133911395 -9875060 + AluJ/FLAM SINE Alu 12 61 -241 2310 87 0 0 chr12 133912338 133912650 -9873805 - AluSx SINE Alu 0 312 1 321 272 114 18 chr12 133912773 133912887 -9873568 - MIR SINE MIR -106 156 32 378 195 115 18 chr12 133912925 133913038 -9873417 - L2 LINE L2 -13 3259 3136 1911 122 17 0 chr12 133913075 133913369 -9873086 + AluSx SINE Alu 1 299 -13 2132 95 20 10 chr12 133913388 133913682 -9872773 + AluSc SINE Alu 1 297 -12 207 0 0 0 chr12 133913778 133913801 -9872654 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1694 173 3 3 chr12 133914257 133914552 -9871903 - AluJb SINE Alu -6 306 12 1499 78 5 15 chr12 133914590 133914795 -9871660 + AluSq SINE Alu 1 203 -110 3632 140 28 64 chr12 133914920 133915050 -9871405 + L1MB2 LINE L1 5476 5609 -562 1976 149 0 0 chr12 133915050 133915351 -9871104 + AluSx SINE Alu 1 301 -11 3632 140 28 64 chr12 133915351 133915568 -9870887 + L1MB2 LINE L1 5609 5832 -339 2535 46 0 0 chr12 133915568 133915872 -9870583 + AluY SINE Alu 1 304 -7 3632 140 28 64 chr12 133915872 133916243 -9870212 + L1MB2 LINE L1 5832 6169 -2 2047 126 0 7 chr12 133916254 133916564 -9869891 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr12 133916567 133916591 -9869864 + AT_rich Low_complexity Low_complexity 1 24 0 503 331 110 20 chr12 133916606 133916962 -9869493 + LTR16B LTR ERVL 39 426 -38 1629 191 0 29 chr12 133917046 133917355 -9869100 + AluJb SINE Alu 13 312 0 413 224 31 10 chr12 133917493 133917591 -9868864 + MER33 DNA MER1_type 10 109 -215 1874 123 7 0 chr12 133917593 133917907 -9868548 + AluSg SINE Alu 3 318 0 2174 112 0 0 chr12 133917920 133918216 -9868239 + AluSx SINE Alu 3 298 -14 1379 179 61 8 chr12 133918216 133918479 -9867976 - AluJb SINE Alu -2 310 34 797 191 30 61 chr12 133918483 133918680 -9867775 + MER33 DNA MER1_type 140 331 -2293 2245 104 3 0 chr12 133918680 133918987 -9867468 - AluSp SINE Alu -5 308 1 797 191 30 61 chr12 133918987 133919020 -9867435 + MER33 DNA MER1_type 331 363 0 679 214 162 92 chr12 133919091 133919227 -9867228 + AluSg1 SINE Alu 9 134 -175 2331 86 0 0 chr12 133919227 133919528 -9866927 + AluY SINE Alu 1 301 -10 679 214 162 92 chr12 133919528 133919662 -9866793 + AluSg1 SINE Alu 134 298 -11 1616 158 29 4 chr12 133919666 133919945 -9866510 + AluJb SINE Alu 15 300 -12 1963 129 0 20 chr12 133919949 133920251 -9866204 + AluSx SINE Alu 1 296 -16 807 250 73 4 chr12 133920253 133920501 -9865954 - L1ME3 LINE L1 -251 5911 5647 1720 170 7 7 chr12 133920516 133920810 -9865645 + AluJb SINE Alu 3 296 -16 437 173 0 0 chr12 133920828 133920903 -9865552 + MER5A DNA MER1_type 1 75 -114 872 152 0 0 chr12 133920903 133921035 -9865420 + FLAM_C SINE Alu 1 132 -1 222 174 0 0 chr12 133921411 133921457 -9864998 + CT-rich Low_complexity Low_complexity 2 47 0 590 204 70 43 chr12 133922185 133922371 -9864084 + MIR SINE MIR 60 250 -12 2213 100 0 25 chr12 133922389 133922709 -9863746 - AluSx SINE Alu 0 312 1 2221 97 0 0 chr12 133922709 133923009 -9863446 - AluSq SINE Alu 0 313 14 1604 178 0 36 chr12 133923016 133923176 -9863279 - AluJo SINE Alu -19 293 148 2544 46 0 3 chr12 133923176 133923483 -9862972 - AluY SINE Alu -5 306 1 1604 178 0 36 chr12 133923483 133923626 -9862829 - AluJo SINE Alu -164 148 1 263 217 0 0 chr12 133923738 133923798 -9862657 + L1MB7 LINE L1 5767 5826 -348 * 370 252 118 7 chr12 133923792 133923927 -9862528 + L1 LINE L1 4802 4951 -1195 273 190 16 2 chr12 133923948 133924018 -9862437 + AluJo/FLAM SINE Alu 71 131 -171 781 105 0 0 chr12 133924021 133924126 -9862329 + AluSq/x SINE Alu 1 105 -207 514 115 0 0 chr12 133924127 133924205 -9862250 + L1MB2 LINE L1 5997 6074 -97 1501 165 3 73 chr12 133924244 133924571 -9861884 + AluJo SINE Alu 5 308 -4 1999 155 0 0 chr12 133924580 133924889 -9861566 + AluSx SINE Alu 1 309 -3 619 158 187 0 chr12 133925245 133925384 -9861071 - MER21B LTR ERV1 -370 493 329 364 228 32 65 chr12 133925387 133925449 -9861006 + L1ME3 LINE L1 6040 6102 -60 1453 206 14 0 chr12 133925449 133925735 -9860720 + AluJo SINE Alu 1 290 -22 2330 53 7 10 chr12 133925736 133926064 -9860391 + AluY SINE Alu 1 311 0 364 228 32 65 chr12 133926064 133926122 -9860333 + L1ME3 LINE L1 6101 6158 -4 1847 160 26 20 chr12 133926131 133926481 -9859974 + L1MB7 LINE L1 5814 6165 -19 2130 92 0 10 chr12 133926543 133926836 -9859619 + AluSg SINE Alu 1 290 -20 1697 168 0 50 chr12 133926846 133927168 -9859287 + AluJb SINE Alu 1 306 -6 460 326 77 18 chr12 133927239 133927460 -9858995 + MIR SINE MIR 29 262 0 1412 158 3 104 chr12 133927583 133927771 -9858684 - AluJo SINE Alu -10 302 161 2149 94 3 17 chr12 133927771 133928070 -9858385 + AluSq SINE Alu 1 295 -18 1412 158 3 104 chr12 133928070 133928217 -9858238 - AluJo SINE Alu -151 161 1 867 195 86 0 chr12 133928222 133928396 -9858059 + MER5A DNA MER1_type 1 189 0 1103 80 0 20 chr12 133928423 133928573 -9857882 - AluSq/x SINE Alu -165 148 2 1941 144 0 7 chr12 133929223 133929529 -9856926 + AluSx SINE Alu 1 304 -8 2289 71 0 3 chr12 133929535 133929831 -9856624 + AluY SINE Alu 7 301 -10 198 0 0 0 chr12 133929857 133929879 -9856576 + (TTA)n Simple_repeat Simple_repeat 2 23 0 969 229 59 25 chr12 133930010 133930082 -9856373 - L1ME3 LINE L1 -182 5980 5912 1994 126 0 17 chr12 133930082 133930383 -9856072 + AluSx SINE Alu 1 296 -16 969 229 59 25 chr12 133930383 133930633 -9855822 - L1ME3 LINE L1 -250 5912 5647 1707 174 7 7 chr12 133930648 133930942 -9855513 + AluJb SINE Alu 3 296 -16 437 173 0 0 chr12 133930960 133931035 -9855420 + MER5A DNA MER1_type 1 75 -114 872 152 0 0 chr12 133931035 133931167 -9855288 + FLAM_C SINE Alu 1 132 -1 182 170 0 21 chr12 133931543 133931590 -9854865 + CT-rich Low_complexity Low_complexity 2 47 0 590 204 70 43 chr12 133932318 133932504 -9853951 + MIR SINE MIR 60 250 -12 2456 61 0 3 chr12 133932522 133932834 -9853621 - AluY SINE Alu 0 311 1 583 258 108 83 chr12 133933237 133933391 -9853064 + L2 LINE L2 2736 2885 -428 1495 162 19 15 chr12 133933391 133933656 -9852799 - AluJb SINE Alu -46 266 1 583 258 108 83 chr12 133933656 133934049 -9852406 + L2 LINE L2 2885 3304 -9 3087 187 38 34 chr12 133935018 133935614 -9850841 + L1MB7 LINE L1 5462 6054 -130 2085 132 3 0 chr12 133935614 133935925 -9850530 + AluSx SINE Alu 1 312 0 3087 187 38 34 chr12 133935925 133935980 -9850475 + L1MB7 LINE L1 6054 6107 -77 1807 129 3 57 chr12 133935980 133936181 -9850274 - AluJo SINE Alu -11 301 122 2186 125 0 3 chr12 133936181 133936492 -9849963 + AluSx SINE Alu 1 310 -2 1807 129 3 57 chr12 133936492 133936608 -9849847 - AluJo SINE Alu -190 122 1 3087 187 38 34 chr12 133936608 133936666 -9849789 + L1MB7 LINE L1 6107 6175 -9 255 31 0 0 chr12 133936684 133936716 -9849739 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1966 130 0 0 chr12 133936787 133937114 -9849341 + AluSx SINE Alu 1 327 0 711 246 100 18 chr12 133937114 133937334 -9849121 + MIR SINE MIR 14 251 -11 1541 157 68 130 chr12 133937700 133937816 -9848639 + MLT1D LTR MaLR 1 123 -382 1743 159 0 0 chr12 133937816 133938087 -9848368 + AluJb SINE Alu 6 276 -36 1541 157 68 130 chr12 133938087 133938119 -9848336 + MLT1D LTR MaLR 123 155 -350 1740 130 6 82 chr12 133938119 133938435 -9848020 + AluSx SINE Alu 1 292 -20 1541 157 68 130 chr12 133938435 133938738 -9847717 + MLT1D LTR MaLR 155 425 -80 1653 167 31 3 chr12 133938847 133939140 -9847315 + AluJb SINE Alu 1 301 -11 295 127 0 165 chr12 133939143 133939178 -9847277 + MLT1D LTR MaLR 440 457 -48 2342 68 7 0 chr12 133939178 133939487 -9846968 - AluY SINE Alu 0 311 1 295 127 0 165 chr12 133939487 133939530 -9846925 + MLT1D LTR MaLR 457 505 0 971 266 51 32 chr12 133939745 133940059 -9846396 + L2 LINE L2 2819 3126 -187 1847 133 54 0 chr12 133940059 133940338 -9846117 - AluSx SINE Alu -18 294 1 971 266 51 32 chr12 133940338 133940368 -9846087 + L2 LINE L2 3126 3154 -159 1423 208 51 0 chr12 133940368 133940661 -9845794 + AluJo SINE Alu 1 308 -4 971 266 51 32 chr12 133940661 133940687 -9845768 + L2 LINE L2 3154 3197 -116 1094 221 19 11 chr12 133940690 133940924 -9845531 + MER33 DNA MER1_type 2 240 -2345 2148 122 0 3 chr12 133940924 133941228 -9845227 - AluSx SINE Alu -9 303 1 1094 221 19 11 chr12 133941228 133941255 -9845200 + MER33 DNA MER1_type 240 265 -59 557 261 0 15 chr12 133941285 133941415 -9845040 + L2 LINE L2 3186 3313 0 194 305 0 17 chr12 133942227 133942286 -9844169 + MIR3 SINE MIR 140 197 -11 924 215 53 26 chr12 133942396 133942624 -9843831 - MIR SINE MIR -10 252 19 274 220 165 44 chr12 133943228 133943319 -9843136 + MIR SINE MIR 86 187 -75 699 209 71 16 chr12 133943568 133943767 -9842688 - MIR SINE MIR -47 215 7 275 215 7 56 chr12 133944306 133944450 -9842005 + G-rich Low_complexity Low_complexity 1 137 0 294 29 0 0 chr12 133944482 133944517 -9841938 + (CGG)n Simple_repeat Simple_repeat 2 36 0 24 85 0 0 chr12 133944851 133944910 -9841545 + GC_rich Low_complexity Low_complexity 1 59 0 2142 97 23 0 chr12 133945622 133945922 -9840533 + AluSg1 SINE Alu 1 307 -2 2254 109 0 0 chr12 133945951 133946264 -9840191 + AluSq SINE Alu 1 313 0 1044 181 0 0 chr12 133946264 133946446 -9840009 + AluSg/x SINE Alu 123 304 -6 1631 157 10 42 chr12 133946451 133946586 -9839869 + AluJb SINE Alu 3 141 -171 2005 82 0 55 chr12 133946586 133946877 -9839578 + AluSx SINE Alu 9 323 0 213 75 0 25 chr12 133946877 133946917 -9839538 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1631 157 10 42 chr12 133946917 133947086 -9839369 + AluJb SINE Alu 141 298 -14 589 203 89 0 chr12 133947101 133947224 -9839231 + FLAM_A SINE Alu 6 139 -3 1943 121 10 7 chr12 133947253 133947550 -9838905 - AluSx SINE Alu -12 300 3 25 0 0 0 chr12 133947552 133947577 -9838878 + AT_rich Low_complexity Low_complexity 1 25 0 219 33 33 0 chr12 133947590 133947620 -9838835 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 201 74 0 0 chr12 133947620 133947647 -9838808 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 * 493 114 11 11 chr12 133947645 133947733 -9838722 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 1548 120 4 9 chr12 133947912 133948145 -9838310 - AluSx SINE Alu -76 236 5 857 184 61 0 chr12 133948215 133948378 -9838077 + MER58B DNA MER1_type 167 339 -2 220 328 0 0 chr12 133948389 133948450 -9838005 - L2 LINE L2 -556 2758 2698 225 172 52 17 chr12 133948482 133948540 -9837915 - LTR67 LTR ERVL -9 548 489 402 257 167 68 chr12 133948975 133949167 -9837288 + MLT1I LTR MaLR 7 179 -230 225 0 0 0 chr12 133949167 133949192 -9837263 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1782 140 0 7 chr12 133949196 133949481 -9836974 - AluSx SINE Alu -29 283 1 402 257 167 68 chr12 133949481 133949649 -9836806 + MLT1I LTR MaLR 181 408 -1 1213 280 103 21 chr12 133949656 133950034 -9836421 - MLT1J2 LTR MaLR -21 429 21 1913 119 0 73 chr12 133950089 133950416 -9836039 + AluJb SINE Alu 1 303 -9 1823 168 10 0 chr12 133950418 133950722 -9835733 + AluJb SINE Alu 3 309 -3 757 203 0 0 chr12 133950834 133950967 -9835488 + FLAM_C SINE Alu 1 133 0 255 125 0 0 chr12 133950980 133951020 -9835435 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 462 264 128 40 chr12 133951020 133951270 -9835185 + L1MB4 LINE L1 5436 5707 -2101 2141 105 0 0 chr12 133951270 133951564 -9834891 - AluSq SINE Alu -15 298 5 842 215 11 17 chr12 133951572 133951749 -9834706 - AluJo SINE Alu -19 293 118 537 121 0 0 chr12 133951808 133951891 -9834564 + (CTACT)n Simple_repeat Simple_repeat 1 83 0 696 152 29 0 chr12 133951895 133952000 -9834455 - AluJo SINE Alu -203 109 2 479 108 0 27 chr12 133952330 133952404 -9834051 + Alu SINE Alu 6 77 -241 21 57 0 0 chr12 133952502 133952537 -9833918 + AT_rich Low_complexity Low_complexity 1 35 0 1448 124 40 40 chr12 133952537 133952836 -9833619 + AluJb SINE Alu 1 299 -13 2132 74 10 7 chr12 133952883 133953181 -9833274 + AluSq SINE Alu 1 299 -14 438 141 51 0 chr12 133953181 133953259 -9833196 + L1MC3 LINE L1 6995 7076 -709 409 293 130 29 chr12 133953265 133953473 -9832982 - MIR SINE MIR -25 237 9 299 217 42 106 chr12 133954023 133954212 -9832243 + AluSg/x SINE Alu 121 297 -3 1605 126 10 30 chr12 133954274 133954575 -9831880 + AluSp SINE Alu 3 297 -16 430 170 38 75 chr12 133954622 133954728 -9831727 + FLAM_A SINE Alu 9 110 -32 2130 109 6 0 chr12 133954739 133955050 -9831405 - AluSp SINE Alu 0 313 1 720 0 0 0 chr12 133955067 133955147 -9831308 + (CA)n Simple_repeat Simple_repeat 2 81 0 1500 178 42 74 chr12 133955147 133955507 -9830948 + L1MB4 LINE L1 5777 6147 -33 2031 115 0 0 chr12 133955507 133955812 -9830643 + AluSg SINE Alu 1 305 -5 2006 114 4 0 chr12 133955812 133956116 -9830339 + AluSx SINE Alu 3 307 0 1500 178 42 74 chr12 133956116 133956157 -9830298 + L1MB4 LINE L1 6145 6167 -13 1978 134 22 110 chr12 133956169 133956299 -9830156 + L1MC3 LINE L1 6687 6827 -958 1827 137 31 0 chr12 133956299 133956591 -9829864 + AluJb SINE Alu 3 303 -9 1685 177 0 0 chr12 133956596 133956890 -9829565 + AluSx SINE Alu 3 296 -16 2240 81 3 7 chr12 133956892 133957199 -9829256 + AluSx SINE Alu 1 306 -6 1978 134 22 110 chr12 133957199 133957405 -9829050 + L1MC3 LINE L1 6832 7055 -730 1988 120 0 10 chr12 133957405 133957713 -9828742 + AluSx SINE Alu 2 306 -6 2135 104 0 3 chr12 133957718 133958025 -9828430 + AluSq SINE Alu 1 306 -7 2208 88 3 0 chr12 133958026 133958323 -9828132 + AluSp SINE Alu 2 299 -14 1978 134 22 110 chr12 133958323 133958432 -9828023 + L1MC3 LINE L1 7058 7109 -676 274 167 31 135 chr12 133958432 133958528 -9827927 + AluJo SINE Alu 70 155 -147 447 200 0 0 chr12 133958528 133958608 -9827847 + FLAM SINE Alu 46 125 -18 473 180 45 0 chr12 133958617 133958706 -9827749 - Charlie5 DNA MER1_type -2507 105 13 884 119 0 0 chr12 133958709 133958924 -9827531 + (TA)n Simple_repeat Simple_repeat 1 215 0 813 116 0 0 chr12 133958991 133959146 -9827309 + (TA)n Simple_repeat Simple_repeat 1 155 0 276 73 0 73 chr12 133959246 133959301 -9827154 - AluY SINE Alu -207 94 44 1794 149 3 3 chr12 133959329 133959665 -9826790 + AluSx SINE Alu 1 336 0 1302 173 7 60 chr12 133959905 133960205 -9826250 - AluJb SINE Alu -21 291 8 2495 48 0 3 chr12 133960395 133960707 -9825748 + AluY SINE Alu 1 311 0 586 200 97 38 chr12 133960733 133960918 -9825537 - MIR SINE MIR -19 243 48 1976 119 0 7 chr12 133961416 133961710 -9824745 + AluSx SINE Alu 1 292 -20 1688 179 0 13 chr12 133961720 133962028 -9824427 + AluSx SINE Alu 1 304 -8 1885 127 0 3 chr12 133962034 133962318 -9824137 + AluY SINE Alu 7 289 -22 1286 161 39 0 chr12 133962319 133962549 -9823906 + L1MB2 LINE L1 5594 5832 -339 556 166 0 136 chr12 133962673 133962908 -9823547 + L1MA4 LINE L1 6098 6300 0 2320 31 68 0 chr12 133963916 133964208 -9822247 + L1PA4 LINE L1 5844 6155 0 193 213 16 98 chr12 133964280 133964341 -9822114 - MER5B DNA MER1_type 0 178 123 1795 179 0 0 chr12 133964342 133964654 -9821801 + AluSx SINE Alu 1 312 0 2675 99 21 0 chr12 133964725 133965098 -9821357 - L1PA11 LINE L1 -6 6168 5788 2001 109 27 0 chr12 133965318 133965612 -9820843 + AluSc SINE Alu 1 302 -7 403 154 0 144 chr12 133965993 133966097 -9820358 - AluSg/x SINE Alu -139 173 85 2104 123 0 0 chr12 133966119 133966412 -9820043 - AluSx SINE Alu -19 293 1 375 269 130 42 chr12 133966420 133966636 -9819819 - HAL1 LINE L1 -948 1559 1325 482 151 10 116 chr12 133966843 133967002 -9819453 - L1MA10 LINE L1 -98 6236 6096 2017 139 3 0 chr12 133967052 133967355 -9819100 - AluSx SINE Alu -8 304 1 2075 98 3 3 chr12 133967425 133967720 -9818735 + AluSc SINE Alu 1 295 -14 2174 103 0 0 chr12 133968081 133968373 -9818082 - AluSx SINE Alu -20 292 1 1364 165 7 33 chr12 133968373 133968646 -9817809 - AluJo SINE Alu -7 305 40 2110 107 0 0 chr12 133968786 133969077 -9817378 + AluSx SINE Alu 1 291 -21 272 91 23 0 chr12 133969077 133969121 -9817334 + (GA)n Simple_repeat Simple_repeat 1 45 0 934 267 160 27 chr12 133969462 133969912 -9816543 - L1MC5 LINE L1 -514 7447 6938 1511 170 3 24 chr12 133969913 133970050 -9816405 + AluJo SINE Alu 1 139 -173 2217 81 0 13 chr12 133970050 133970348 -9816107 + AluY SINE Alu 1 294 -17 1511 170 3 24 chr12 133970348 133970498 -9815957 + AluJo SINE Alu 139 282 -30 3868 195 67 22 chr12 133970630 133970763 -9815692 + L1MB7 LINE L1 5074 5200 -984 2235 105 0 0 chr12 133970763 133971076 -9815379 + AluSq SINE Alu 1 313 0 3868 195 67 22 chr12 133971076 133971273 -9815182 + L1MB7 LINE L1 5200 5387 -797 1778 169 3 13 chr12 133971273 133971586 -9814869 + AluJo SINE Alu 1 310 -2 3868 195 67 22 chr12 133971586 133972253 -9814202 + L1MB7 LINE L1 5387 6115 -69 1580 143 47 0 chr12 133972262 133972543 -9813912 - AluJb SINE Alu 0 307 15 224 268 24 24 chr12 133973076 133973158 -9813297 + MIR SINE MIR 179 260 -2 1916 120 3 17 chr12 133973170 133973334 -9813121 - AluSc SINE Alu -14 295 135 2196 99 0 10 chr12 133973334 133973647 -9812808 - AluY SINE Alu -1 310 1 1916 120 3 17 chr12 133973647 133973781 -9812674 - AluSc SINE Alu -174 135 1 531 115 13 0 chr12 133973825 133973903 -9812552 - MADE1 DNA Mariner 0 80 2 2241 75 0 0 chr12 133974014 133974332 -9812123 + AluY SINE Alu 1 318 0 680 226 127 53 chr12 133974484 133974880 -9811575 - MLT1H LTR MaLR -23 526 7 21 0 0 0 chr12 133974881 133974902 -9811553 + AT_rich Low_complexity Low_complexity 1 21 0 248 125 0 0 chr12 133975617 133975657 -9810798 + Alu SINE Alu 255 294 -6 456 66 66 26 chr12 133975666 133975742 -9810713 + AluSg1 SINE Alu 13 91 -218 829 119 21 7 chr12 133975743 133975886 -9810569 - AluY SINE Alu -8 303 159 1661 78 4 67 chr12 133975902 133976157 -9810298 + AluSq SINE Alu 66 304 -9 27 29 0 0 chr12 133976563 133976597 -9809858 + AT_rich Low_complexity Low_complexity 1 34 0 1842 156 0 0 chr12 133976754 133977042 -9809413 + AluJb SINE Alu 7 294 -18 2929 162 12 36 chr12 133977042 133977603 -9808852 - L1 LINE L1 -1817 4329 3782 2021 113 3 10 chr12 133977603 133977903 -9808552 - AluSq SINE Alu -12 301 4 843 141 6 19 chr12 133977916 133978072 -9808383 - AluSg/x SINE Alu -1 311 158 2229 62 3 40 chr12 133978613 133978917 -9807538 - AluY SINE Alu -18 293 1 664 274 207 39 chr12 133979140 133979638 -9806817 - L2 LINE L2 -5 3308 2895 252 0 0 0 chr12 133979638 133979666 -9806789 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1771 126 7 18 chr12 133979669 133979954 -9806501 - AluJo SINE Alu -30 282 1 664 274 207 39 chr12 133979954 133980272 -9806183 - L2 LINE L2 -419 2894 2347 322 93 0 0 chr12 133980272 133980315 -9806140 + Alu SINE Alu 9 51 -250 249 178 79 79 chr12 133980883 133980984 -9805471 + L2 LINE L2 2608 2708 -606 1833 145 14 7 chr12 133980986 133981282 -9805173 + AluJb SINE Alu 1 298 -14 2138 119 0 3 chr12 133981411 133981713 -9804742 - AluSx SINE Alu -11 301 1 314 254 0 0 chr12 133981763 133981834 -9804621 - L1MC4 LINE L1 -1043 6999 6929 949 206 0 20 chr12 133981899 133982103 -9804352 - AluJo SINE Alu -6 306 107 1657 143 0 57 chr12 133982163 133982496 -9803959 + AluJb SINE Alu 1 316 0 245 279 94 27 chr12 133982644 133982928 -9803527 + L2 LINE L2 1841 2241 -1073 * 391 287 16 39 chr12 133982922 133983051 -9803404 - L2 LINE L2 -606 2708 2583 689 211 111 114 chr12 133983052 133983350 -9803105 + L2 LINE L2 3014 3310 -3 278 299 81 0 chr12 133983349 133983436 -9803019 + L2 LINE L2 2251 2344 -970 * 450 192 0 20 chr12 133983464 133983563 -9802892 - AluSg/x SINE Alu -5 307 211 354 224 56 0 chr12 133983569 133983676 -9802779 + L2 LINE L2 2348 2460 -854 704 118 0 27 chr12 133983676 133983786 -9802669 - FLAM_C SINE Alu -8 135 29 610 251 220 36 chr12 133983790 133983943 -9802512 + L2 LINE L2 2455 2579 -734 2656 92 24 8 chr12 133983943 133984312 -9802143 + THE1C LTR MaLR 1 375 0 610 251 220 36 chr12 133984312 133984626 -9801829 + L2 LINE L2 2579 3037 -276 1826 147 30 0 chr12 133984716 133985015 -9801440 + AluJb SINE Alu 1 308 -4 507 283 93 39 chr12 133985015 133985229 -9801226 + L2 LINE L2 3019 3253 -60 3593 117 4 4 chr12 133985229 133985740 -9800715 + MER9 LTR ERVK 1 511 0 507 283 93 39 chr12 133985740 133985804 -9800651 + L2 LINE L2 3253 3312 -1 1671 174 48 26 chr12 133986299 133986650 -9799805 + MLT1A1 LTR MaLR 1 359 -6 2952 182 8 76 chr12 133987669 133988300 -9798155 + MER77 LTR ERV1 5 592 -13 2026 128 17 0 chr12 133988854 133989150 -9797305 + AluSx SINE Alu 3 303 -9 246 265 111 34 chr12 133989435 133989552 -9796903 + MIR SINE MIR 103 228 -34 198 0 0 0 chr12 133989612 133989634 -9796821 + (A)n Simple_repeat Simple_repeat 1 22 0 614 161 97 32 chr12 133989740 133989864 -9796591 + FLAM_A SINE Alu 2 133 0 1931 104 7 28 chr12 133989866 133990155 -9796300 - AluSx SINE Alu -21 291 9 1016 158 0 11 chr12 133990185 133990362 -9796093 + AluJo SINE Alu 120 294 -18 262 125 236 0 chr12 133990368 133990440 -9796015 + L1MB4 LINE L1 6091 6179 -1 1659 113 21 98 chr12 133990645 133990973 -9795482 + AluYb8 SINE Alu 1 303 -15 1635 166 21 3 chr12 133991083 133991373 -9795082 + AluJo SINE Alu 1 295 -17 1523 188 102 37 chr12 133991532 133991687 -9794768 + MLT1C LTR MaLR 8 152 -315 2203 89 0 0 chr12 133991687 133991978 -9794477 + AluSq SINE Alu 1 291 -22 239 0 0 31 chr12 133991978 133992010 -9794445 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1523 188 102 37 chr12 133992010 133992285 -9794170 + MLT1C LTR MaLR 151 467 0 192 265 10 61 chr12 133992638 133992736 -9793719 - L2 LINE L2 -2917 397 305 503 186 20 0 chr12 133992804 133992906 -9793549 + L1MB2 LINE L1 6067 6170 -1 2299 102 0 6 chr12 133992914 133993228 -9793227 + AluSx SINE Alu 1 312 0 263 324 135 8 chr12 133993453 133993712 -9792743 + L1MC4a LINE L1 5626 5917 -1891 243 0 0 0 chr12 133993807 133993834 -9792621 + (TAGG)n Simple_repeat Simple_repeat 2 28 0 709 182 17 0 chr12 133993881 133994057 -9792398 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 646 197 38 0 chr12 133994069 133994419 -9792036 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 542 173 32 0 chr12 133994439 133994595 -9791860 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 2166 110 0 0 chr12 133995956 133996255 -9790200 + AluSx SINE Alu 1 299 -13 1992 123 3 16 chr12 133996257 133996567 -9789888 + AluJb SINE Alu 1 306 -6 548 213 144 6 chr12 133997183 133997343 -9789112 + MIR SINE MIR 81 262 0 210 260 94 10 chr12 133998150 133998246 -9788209 - MIR SINE MIR -56 152 49 2267 94 0 0 chr12 133998912 133999210 -9787245 + AluSx SINE Alu 1 298 -14 2041 117 3 7 chr12 134001370 134001668 -9784787 + AluSx SINE Alu 1 297 -15 2000 123 3 0 chr12 134002740 134003033 -9783422 - AluSx SINE Alu -18 294 1 249 297 43 45 chr12 134003653 134003819 -9782636 + MIR SINE MIR 20 194 -14 180 0 0 0 chr12 134003864 134003884 -9782571 + (A)n Simple_repeat Simple_repeat 1 20 0 1071 151 99 182 chr12 134003916 134004081 -9782374 - Tigger6 DNA MER2_type 0 1597 1420 2498 55 3 0 chr12 134004081 134004391 -9782064 - AluY SINE Alu 0 311 1 1071 151 99 182 chr12 134004391 134004624 -9781831 - Tigger6 DNA MER2_type -177 1420 1243 2132 109 6 13 chr12 134004624 134004937 -9781518 - AluSx SINE Alu -1 311 1 1071 151 99 182 chr12 134004937 134005020 -9781435 - Tigger6 DNA MER2_type -354 1243 1155 480 204 46 9 chr12 134005107 134005215 -9781240 - Tigger6 DNA MER2_type -1485 112 1 286 214 0 0 chr12 134005347 134005403 -9781052 - MER119 DNA MER1_type 0 583 528 336 224 0 0 chr12 134005451 134005518 -9780937 - MER119 DNA MER1_type -42 541 475 253 266 106 21 chr12 134005528 134005622 -9780833 - MER119 DNA MER1_type -453 130 29 1303 211 117 12 chr12 134006534 134006875 -9779580 + MLT1B LTR MaLR 10 386 -4 225 69 0 0 chr12 134007651 134007680 -9778775 - MLT1B LTR MaLR -69 321 293 1924 115 13 10 chr12 134008032 134008344 -9778111 + AluSq SINE Alu 1 313 0 1977 125 3 0 chr12 134008530 134008819 -9777636 - AluJb SINE Alu -22 290 1 318 218 181 15 chr12 134009845 134009978 -9776477 + MIR SINE MIR 33 187 -75 543 275 116 19 chr12 134010532 134010739 -9775716 - MIR SINE MIR -8 254 28 1886 147 3 0 chr12 134010882 134011181 -9775274 - AluJo SINE Alu -12 300 1 582 216 8 37 chr12 134012166 134012300 -9774155 + L2 LINE L2 3180 3309 -4 2008 90 61 0 chr12 134013246 134013524 -9772931 - AluSx SINE Alu -17 295 1 1003 131 34 23 chr12 134013524 134013700 -9772755 - AluJb SINE Alu -5 307 130 29 47 0 0 chr12 134013816 134013859 -9772596 + AT_rich Low_complexity Low_complexity 1 43 0 2305 62 0 7 chr12 134014460 134014749 -9771706 - AluY SINE Alu -9 302 16 2208 85 6 22 chr12 134016498 134016816 -9769639 - AluSp SINE Alu 0 313 1 2218 95 3 0 chr12 134017337 134017632 -9768823 - AluSx SINE Alu -16 296 1 1392 160 52 52 chr12 134018423 134018550 -9767905 + AluJo SINE Alu 1 127 -185 204 67 0 0 chr12 134018550 134018580 -9767875 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1392 160 52 52 chr12 134018580 134018739 -9767716 + AluJo SINE Alu 126 287 -25 1223 133 4 83 chr12 134018797 134019037 -9767418 - AluSx SINE Alu -91 221 1 459 330 28 51 chr12 134019432 134019647 -9766808 + HAL1b LINE L1 61 270 -1078 1895 131 0 26 chr12 134019676 134019982 -9766473 + AluSx SINE Alu 1 298 -14 1006 146 118 0 chr12 134020012 134020219 -9766236 - AluJb SINE Alu 0 313 86 295 268 62 62 chr12 134020287 134020496 -9765959 + HAL1b LINE L1 373 581 -767 204 40 0 0 chr12 134021585 134021610 -9764845 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 347 148 40 114 chr12 134021687 134021777 -9764678 + L1MC4a LINE L1 5284 5360 -2448 2097 80 39 0 chr12 134021777 134022063 -9764392 - AluSp SINE Alu -16 297 1 347 148 40 114 chr12 134022063 134022121 -9764334 + L1MC4a LINE L1 5360 5421 -2387 362 225 356 15 chr12 134022148 134022482 -9763973 + L1MC4a LINE L1 5620 6067 -1741 863 119 0 0 chr12 134022637 134022755 -9763700 + FLAM_C SINE Alu 1 118 -15 25 31 0 0 chr12 134022755 134022787 -9763668 + AT_rich Low_complexity Low_complexity 1 32 0 2190 94 0 16 chr12 134023694 134024003 -9762452 + AluSc SINE Alu 1 304 -5 2046 122 0 3 chr12 134024013 134024307 -9762148 + AluSx SINE Alu 1 293 -19 383 87 14 0 chr12 134024974 134025043 -9761412 + (CA)n Simple_repeat Simple_repeat 2 71 0 408 267 167 14 chr12 134025575 134025796 -9760659 - MIR SINE MIR -4 258 4 1793 220 54 39 chr12 134026365 134026853 -9759602 - MER82 DNA MER2_type 0 653 48 2115 109 3 3 chr12 134026853 134027155 -9759300 - AluSp SINE Alu -11 302 1 1793 220 54 39 chr12 134027155 134027200 -9759255 - MER82 DNA MER2_type -605 48 5 1174 281 157 37 chr12 134027249 134028288 -9758167 - L2 LINE L2 -44 3269 2129 243 284 37 0 chr12 134028404 134028485 -9757970 + L1MC4 LINE L1 6463 6546 -1496 307 159 0 0 chr12 134028494 134028538 -9757917 + AluJ/FLAM SINE Alu 25 68 -234 620 114 0 0 chr12 134028538 134028626 -9757829 + AluJ/FLAM SINE Alu 15 102 -210 362 264 108 18 chr12 134028884 134029051 -9757404 + L1ME4a LINE L1 5930 6111 -10 1571 129 5 0 chr12 134029157 134029381 -9757074 + AluSx SINE Alu 1 225 -87 1727 125 0 80 chr12 134029714 134029808 -9756647 + AluSx SINE Alu 1 101 -211 2505 48 0 3 chr12 134029808 134030118 -9756337 + AluY SINE Alu 1 309 -2 1727 125 0 80 chr12 134030118 134030335 -9756120 + AluSx SINE Alu 101 287 -25 189 0 0 0 chr12 134030340 134030361 -9756094 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2043 271 87 54 chr12 134030699 134031627 -9754828 + L1MC4 LINE L1 6673 7650 -392 916 147 158 123 chr12 134031627 134031919 -9754536 + AluJo SINE Alu 1 302 0 2043 271 87 54 chr12 134031919 134032180 -9754275 + L1MC4 LINE L1 7650 7901 -141 1391 279 75 65 chr12 134032454 134032586 -9753869 + L1MEd LINE L1 3 132 -5987 2039 99 34 0 chr12 134032586 134032878 -9753577 + AluSg SINE Alu 1 302 -8 1391 279 75 65 chr12 134032878 134033501 -9752954 + L1MEd LINE L1 132 766 -5353 1882 118 12 59 chr12 134034345 134034667 -9751788 - AluJo SINE Alu -5 307 1 1953 105 10 7 chr12 134034931 134035226 -9751229 + AluSx SINE Alu 3 298 -14 2095 76 7 21 chr12 134035464 134035755 -9750700 + AluSg SINE Alu 9 295 -15 279 0 0 0 chr12 134037993 134038024 -9748431 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 745 179 0 22 chr12 134038333 134038467 -9747988 - FLAM_A SINE Alu -2 131 1 1652 167 11 7 chr12 134038525 134038800 -9747655 - AluJo SINE Alu -36 276 1 559 169 0 0 chr12 134039063 134039152 -9747303 + AluSx SINE Alu 2 90 -223 2061 129 114 58 chr12 134039152 134039600 -9746855 - LTR21A LTR ERV1 -32 473 1 1606 114 0 0 chr12 134039600 134039828 -9746627 + AluSx SINE Alu 73 300 -12 275 272 119 60 chr12 134040138 134040473 -9745982 + L1ME4a LINE L1 5755 6109 -12 24 67 0 0 chr12 134040616 134040661 -9745794 + AT_rich Low_complexity Low_complexity 1 45 0 323 290 0 30 chr12 134040674 134040774 -9745681 + L1MB8 LINE L1 5508 5604 -517 1105 157 9 28 chr12 134040775 134040827 -9745628 + AluSx SINE Alu 85 136 -176 1958 122 10 3 chr12 134040827 134041123 -9745332 + AluSx SINE Alu 1 298 -14 1105 157 9 28 chr12 134041123 134041286 -9745169 + AluSx SINE Alu 136 296 -16 1843 168 3 0 chr12 134041471 134041781 -9744674 + AluJb SINE Alu 1 311 -1 1320 206 38 15 chr12 134041783 134041872 -9744583 + L1MB8 LINE L1 5769 5854 -324 2297 95 0 0 chr12 134041872 134042178 -9744277 - AluSx SINE Alu -2 310 5 1320 206 38 15 chr12 134042178 134042408 -9744047 + L1MB8 LINE L1 5854 6094 -84 2001 121 7 0 chr12 134042412 134042701 -9743754 - AluSx SINE Alu -16 296 6 2353 193 48 30 chr12 134042706 134042848 -9743607 + L1 LINE L1 2775 2913 -3233 2273 87 0 3 chr12 134042848 134043147 -9743308 - AluSc SINE Alu -11 298 1 2353 193 48 30 chr12 134043147 134043370 -9743085 + L1 LINE L1 2913 3130 -3016 2116 110 0 3 chr12 134043370 134043670 -9742785 + AluSx SINE Alu 11 309 -3 2353 193 48 30 chr12 134043670 134043903 -9742552 + L1 LINE L1 3130 3385 -2761 2018 139 7 0 chr12 134043903 134044213 -9742242 + AluSx SINE Alu 1 312 0 522 120 10 30 chr12 134044213 134044305 -9742150 + L1 LINE L1 3697 3788 -2358 1174 113 0 31 chr12 134044305 134044499 -9741956 + AluSx SINE Alu 1 188 -124 1267 115 5 5 chr12 134044604 134044795 -9741660 + AluSg/x SINE Alu 111 301 -9 255 179 164 0 chr12 134044796 134044863 -9741592 + L1MC5 LINE L1 7706 7783 -178 477 251 160 34 chr12 134044958 134045221 -9741234 + L1ME4a LINE L1 5813 6108 -13 2172 87 0 7 chr12 134045769 134046056 -9740399 - AluSc SINE Alu -22 287 3 189 276 26 103 chr12 134046980 134047096 -9739359 - L2 LINE L2 -2355 959 853 552 212 29 36 chr12 134047207 134047344 -9739111 + L2 LINE L2 3137 3272 0 188 222 14 97 chr12 134047379 134047451 -9739004 - L2 LINE L2 -90 3223 3158 353 261 144 48 chr12 134047603 134047894 -9738561 + L2 LINE L2 2918 3236 -77 24 32 0 0 chr12 134048521 134048552 -9737903 + GC_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr12 134048755 134048781 -9737674 + (TG)n Simple_repeat Simple_repeat 1 26 0 1839 102 3 14 chr12 134048796 134049081 -9737374 - AluSx SINE Alu -30 282 1 1661 135 17 21 chr12 134049091 134049380 -9737075 - AluJb SINE Alu -22 290 3 266 305 78 18 chr12 134049411 134049578 -9736877 - L1MB8 LINE L1 -94 6084 5908 567 246 137 6 chr12 134049708 134049891 -9736564 + L2 LINE L2 3107 3313 0 1984 130 3 7 chr12 134050081 134050388 -9736067 + AluSq SINE Alu 1 306 -7 2441 69 0 0 chr12 134050623 134050927 -9735528 + AluY SINE Alu 1 304 -7 1699 142 26 48 chr12 134051200 134051511 -9734944 + AluJb SINE Alu 1 304 -8 1393 142 42 71 chr12 134051713 134052023 -9734432 + AluJo SINE Alu 1 301 -11 1633 133 70 0 chr12 134052550 134052835 -9733620 + AluSx SINE Alu 1 305 -7 1944 92 50 0 chr12 134052835 134053116 -9733339 + AluSq SINE Alu 1 295 -18 1725 135 39 0 chr12 134053305 134053586 -9732869 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr12 134053707 134053729 -9732726 + AT_rich Low_complexity Low_complexity 1 22 0 1391 269 77 40 chr12 134054566 134054787 -9731668 + MLT1K LTR MaLR 50 261 -327 2196 107 3 0 chr12 134054787 134055095 -9731360 + AluSp SINE Alu 1 309 -4 1391 269 77 40 chr12 134055095 134055379 -9731076 + MLT1K LTR MaLR 261 574 -14 2249 97 0 0 chr12 134055382 134055681 -9730774 + AluSc SINE Alu 1 299 -10 552 191 95 0 chr12 134055706 134055832 -9730623 - MIR SINE MIR -111 151 14 2257 80 3 0 chr12 134056538 134056837 -9729618 + AluSc SINE Alu 1 300 -9 1445 189 13 33 chr12 134057052 134057358 -9729097 + AluJb SINE Alu 1 300 -12 2173 84 21 3 chr12 134057360 134057647 -9728808 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr12 134057652 134057682 -9728773 + AT_rich Low_complexity Low_complexity 1 30 0 224 250 58 0 chr12 134058775 134058827 -9727628 + MIR SINE MIR 43 97 -111 2302 57 0 17 chr12 134059084 134059385 -9727070 - AluY SINE Alu -15 296 1 1516 166 52 10 chr12 134059410 134059718 -9726737 - L1MB8 LINE L1 0 6178 5858 234 105 0 0 chr12 134059854 134059892 -9726563 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1580 178 0 34 chr12 134059894 134060111 -9726344 - AluJo SINE Alu -30 282 76 2077 97 13 10 chr12 134060111 134060419 -9726036 + AluSg SINE Alu 1 309 -1 1580 178 0 34 chr12 134060419 134060493 -9725962 - AluJo SINE Alu -236 76 1 1767 164 3 25 chr12 134060521 134060838 -9725617 + AluJb SINE Alu 1 310 -2 1975 144 0 3 chr12 134061385 134061684 -9724771 + AluJb SINE Alu 1 298 -14 1592 183 27 3 chr12 134062109 134062404 -9724051 + AluJb SINE Alu 1 302 -10 373 171 13 0 chr12 134062407 134062483 -9723972 + L1MB5 LINE L1 5419 5495 -676 842 206 0 32 chr12 134062487 134062498 -9723957 + AluJb SINE Alu 118 128 -184 2198 109 3 0 chr12 134062498 134062802 -9723653 + AluSp SINE Alu 1 305 -8 842 206 0 32 chr12 134062802 134062979 -9723476 + AluJb SINE Alu 128 300 -12 1831 122 35 14 chr12 134063046 134063333 -9723122 + AluSx SINE Alu 1 293 -19 2159 114 0 0 chr12 134064696 134064993 -9721462 + AluSq SINE Alu 1 297 -16 839 129 7 29 chr12 134065023 134065162 -9721293 + AluSx SINE Alu 1 136 -176 1186 135 0 0 chr12 134065238 134065430 -9721025 + AluSx SINE Alu 119 310 0 310 307 0 11 chr12 134066227 134066315 -9720140 + L2 LINE L2 3184 3270 -2 1905 115 0 17 chr12 134066439 134066546 -9719909 + AluSx SINE Alu 30 137 -175 2041 114 13 3 chr12 134066546 134066853 -9719602 + AluSg SINE Alu 1 310 0 1905 115 0 17 chr12 134066853 134067033 -9719422 + AluSx SINE Alu 137 312 0 2030 111 7 7 chr12 134067085 134067383 -9719072 + AluSx SINE Alu 1 298 -14 216 135 0 0 chr12 134067440 134067477 -9718978 + (A)n Simple_repeat Simple_repeat 1 37 0 2326 90 3 0 chr12 134067512 134067822 -9718633 + AluSp SINE Alu 1 311 -2 3269 158 30 13 chr12 134068445 134068493 -9717962 + L1MB5 LINE L1 5533 5579 -595 2180 99 10 16 chr12 134068493 134068627 -9717828 + AluSx SINE Alu 1 134 -178 2139 77 0 51 chr12 134068627 134068939 -9717516 + AluSq SINE Alu 1 296 -17 2180 99 10 16 chr12 134068939 134069118 -9717337 + AluSx SINE Alu 134 312 0 3269 158 30 13 chr12 134069118 134069669 -9716786 + L1MB5 LINE L1 5579 6142 -32 1776 130 0 0 chr12 134069673 134069927 -9716528 + AluSq SINE Alu 5 258 -55 1778 154 4 4 chr12 134070738 134071018 -9715437 + AluJo SINE Alu 1 280 -32 1157 118 16 5 chr12 134071146 134071332 -9715123 + L1PA13 LINE L1 5976 6163 0 592 176 59 8 chr12 134071357 134071476 -9714979 + AluJb SINE Alu 1 125 -187 1586 157 26 38 chr12 134071482 134071795 -9714660 + AluJb SINE Alu 1 309 -3 2208 80 3 3 chr12 134071795 134072083 -9714372 + AluSp SINE Alu 14 301 -12 1965 114 3 10 chr12 134072323 134072629 -9713826 + AluSc SINE Alu 1 304 -5 1840 144 3 7 chr12 134072852 134073157 -9713298 - AluSx SINE Alu -8 304 1 2244 67 17 0 chr12 134073164 134073462 -9712993 - AluY SINE Alu -8 303 1 611 284 5 10 chr12 134074492 134074693 -9711762 + AluSx SINE Alu 2 201 -111 21 0 0 0 chr12 134075166 134075187 -9711268 + GC_rich Low_complexity Low_complexity 1 21 0 499 284 128 41 chr12 134076134 134076352 -9710103 - MIR SINE MIR -2 260 24 864 155 0 0 chr12 134076457 134076586 -9709869 + FLAM_C SINE Alu 1 129 -4 225 183 33 67 chr12 134076599 134076779 -9709676 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 327 211 58 0 chr12 134076826 134076982 -9709473 + (TATATG)n Simple_repeat Simple_repeat 6 170 0 471 289 23 17 chr12 134077002 134077081 -9709374 + (TATG)n Simple_repeat Simple_repeat 1 78 -96 1185 208 115 37 chr12 134077081 134077175 -9709280 + MER7A DNA MER2_type 1 86 -2952 2328 48 3 45 chr12 134077175 134077489 -9708966 - AluY SINE Alu -10 301 1 1185 208 115 37 chr12 134077489 134077716 -9708739 + MER7A DNA MER2_type 86 345 -1 471 289 23 17 chr12 134077716 134077809 -9708646 + (TATG)n Simple_repeat Simple_repeat 78 174 0 257 236 55 64 chr12 134077822 134077932 -9708523 + L1ME4a LINE L1 5939 6047 -74 21 71 0 0 chr12 134077971 134078013 -9708442 + AT_rich Low_complexity Low_complexity 1 42 0 1035 192 9 9 chr12 134078127 134078341 -9708114 - AluJb SINE Alu 0 312 99 441 293 133 28 chr12 134078920 134079169 -9707286 - L2 LINE L2 -2 3311 3037 3062 173 65 12 chr12 134079525 134080108 -9706347 + LTR31 LTR ERV1 6 619 0 568 273 78 44 chr12 134080156 134080257 -9706198 - MER113 DNA MER1_type? -86 435 339 4003 114 28 0 chr12 134080257 134080820 -9705635 + LTR19B LTR ERV1 1 579 -1 568 273 78 44 chr12 134080820 134081113 -9705342 - MER113 DNA MER1_type? -182 339 1 280 275 67 17 chr12 134081145 134081265 -9705190 - MIR3 SINE MIR -40 168 43 418 268 56 0 chr12 134081266 134081408 -9705047 + MER113 DNA MER1_type? 277 426 -95 1261 211 43 10 chr12 134081609 134081913 -9704542 + MER33 DNA MER1_type 11 324 0 1720 150 14 10 chr12 134082968 134083261 -9703194 - AluJo SINE Alu -18 294 1 1660 238 16 55 chr12 134083276 134083826 -9702629 - L1ME1 LINE L1 -5 6161 5633 778 296 71 19 chr12 134083826 134084150 -9702305 + L2 LINE L2 1838 2178 -1136 1515 219 60 51 chr12 134084159 134084612 -9701843 + MLT1C LTR MaLR 7 463 -4 1098 260 114 35 chr12 134084619 134085112 -9701343 + L2 LINE L2 2181 2712 -602 1501 108 48 4 chr12 134085229 134085480 -9700975 + L1MA2 LINE L1 6042 6303 -1 1104 212 221 3 chr12 134086133 134086449 -9700006 + MLT2B1 LTR ERVL 75 459 -61 309 229 15 99 chr12 134086497 134086628 -9699827 + L1MC3 LINE L1 6526 6645 -1140 259 111 40 36 chr12 134086630 134086685 -9699770 + MLT2C2 LTR ERVL 416 464 0 2045 127 3 3 chr12 134086872 134087171 -9699284 - AluSx SINE Alu -11 301 3 900 119 0 8 chr12 134087177 134087311 -9699144 - AluJb SINE Alu -179 133 1 622 124 19 176 chr12 134087409 134087467 -9698988 - L1MB5 LINE L1 -14 6160 6095 1675 174 0 10 chr12 134087467 134087766 -9698689 + AluJo SINE Alu 3 298 -14 622 124 19 176 chr12 134087766 134087835 -9698620 - L1MB5 LINE L1 -79 6095 6076 2218 101 0 0 chr12 134087835 134088131 -9698324 - AluSq SINE Alu -17 296 1 622 124 19 176 chr12 134088131 134088212 -9698243 - L1MB5 LINE L1 -98 6076 5984 2304 90 0 0 chr12 134089099 134089398 -9697057 + AluSx SINE Alu 6 304 -8 805 164 0 0 chr12 134090329 134090457 -9695998 + FLAM_C SINE Alu 13 140 -3 2108 126 0 0 chr12 134090475 134090784 -9695671 + AluSx SINE Alu 1 309 -3 28 61 0 0 chr12 134090795 134090844 -9695611 + AT_rich Low_complexity Low_complexity 1 49 0 2198 123 10 0 chr12 134090852 134091161 -9695294 + AluSp SINE Alu 1 312 -1 254 273 104 78 chr12 134091457 134091473 -9694982 + L1ME LINE L1 797 811 -5499 24 0 0 0 chr12 134091473 134091497 -9694958 + AT_rich Low_complexity Low_complexity 1 24 0 254 273 104 78 chr12 134091497 134092093 -9694362 + L1ME LINE L1 811 1476 -4834 755 240 39 0 chr12 134092136 134092315 -9694140 + L1ME LINE L1 5460 5645 -508 2492 231 27 39 chr12 134092322 134092962 -9693493 - MER21B LTR ERV1 -209 654 23 401 217 0 0 chr12 134092987 134093056 -9693399 - MER21B LTR ERV1 -773 90 22 1826 155 45 3 chr12 134093089 134093398 -9693057 + MER7A DNA MER2_type 10 329 -17 1321 274 65 11 chr12 134093443 134094016 -9692439 + L1MD1 LINE L1 4006 4609 -1537 212 0 36 0 chr12 134094017 134094045 -9692410 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2650 49 0 10 chr12 134094181 134094488 -9691967 + AluY SINE Alu 1 304 -7 4173 184 47 57 chr12 134095438 134096021 -9690434 + L1MD1 LINE L1 5027 5614 -628 2196 115 0 0 chr12 134096021 134096308 -9690147 + AluSq SINE Alu 1 287 -26 4173 184 47 57 chr12 134096308 134096940 -9689515 + L1MD1 LINE L1 5614 6242 0 503 178 55 31 chr12 134097460 134097594 -9688861 + Charlie1 DNA MER1_type 2478 2618 -143 2393 95 0 0 chr12 134097594 134097890 -9688565 - AluSg SINE Alu -14 296 1 503 178 55 31 chr12 134097890 134097918 -9688537 + Charlie1 DNA MER1_type 2618 2644 -117 1001 162 30 0 chr12 134097918 134098085 -9688370 - AluJb SINE Alu -3 309 138 598 182 0 33 chr12 134098087 134098208 -9688247 + Charlie1 DNA MER1_type 2634 2750 -11 456 259 63 14 chr12 134098532 134098675 -9687780 + Charlie8 DNA MER1_type 24 173 -2244 230 226 53 8 chr12 134099452 134099503 -9686952 + (TA)n Simple_repeat Simple_repeat 2 49 -91 2438 90 3 0 chr12 134099503 134099803 -9686652 - AluSx SINE Alu -11 301 1 230 226 53 8 chr12 134099803 134099884 -9686571 + (TA)n Simple_repeat Simple_repeat 49 140 0 209 138 0 35 chr12 134099891 134099949 -9686506 + (TATAA)n Simple_repeat Simple_repeat 3 58 0 2118 162 89 2 chr12 134100020 134100414 -9686041 + MSTA LTR MaLR 1 428 0 975 200 42 56 chr12 134100486 134100771 -9685684 + MER58B DNA MER1_type 61 341 0 2207 127 0 13 chr12 134100930 134101246 -9685209 + AluJb SINE Alu 1 312 0 2356 87 0 3 chr12 134101456 134101754 -9684701 + AluY SINE Alu 1 297 -14 1912 147 7 0 chr12 134102150 134102450 -9684005 - AluSx SINE Alu -10 302 1 1022 162 44 25 chr12 134102610 134102814 -9683641 - L1MA2 LINE L1 0 6304 6097 1767 191 84 47 chr12 134102867 134103354 -9683101 + MLT1D LTR MaLR 1 505 0 2361 93 6 3 chr12 134103450 134103761 -9682694 - AluSx SINE Alu 0 312 1 1985 158 0 3 chr12 134103765 134104062 -9682393 - AluJo SINE Alu -15 297 2 215 402 54 0 chr12 134104081 134104193 -9682262 + L2 LINE L2 3136 3253 -19 280 257 106 99 chr12 134104857 134104989 -9681466 + HAL1 LINE L1 47 177 -2330 2387 81 0 0 chr12 134104989 134105285 -9681170 + AluY SINE Alu 1 296 -15 280 257 106 99 chr12 134105285 134105444 -9681011 + HAL1 LINE L1 177 340 -2167 1402 245 125 62 chr12 134105551 134105865 -9680590 + HAL1 LINE L1 1490 1783 -724 2314 117 0 3 chr12 134105865 134106174 -9680281 + AluSq SINE Alu 1 308 -5 1402 245 125 62 chr12 134106174 134106483 -9679972 + HAL1 LINE L1 1783 2152 -355 325 289 106 19 chr12 134106589 134106845 -9679610 + HAL1 LINE L1 2135 2412 -95 1555 173 30 8 chr12 134106914 134107180 -9679275 + AluJb SINE Alu 38 309 -3 1686 157 6 49 chr12 134107582 134107906 -9678549 - AluJb SINE Alu -2 310 1 189 200 40 0 chr12 134109042 134109092 -9677363 + L2 LINE L2 2900 2951 -363 1893 100 0 0 chr12 134109104 134109345 -9677110 + AluSx SINE Alu 41 281 -31 192 77 0 0 chr12 134109345 134109371 -9677084 + (CA)n Simple_repeat Simple_repeat 1 26 0 522 175 193 9 chr12 134109371 134109485 -9676970 + MER45B DNA AcHobo 633 767 -273 2188 103 17 0 chr12 134109486 134109778 -9676677 - AluSg SINE Alu -13 297 1 250 248 44 53 chr12 134109778 134109792 -9676663 + MER45B DNA AcHobo 929 942 -639 1874 166 10 7 chr12 134109792 134110100 -9676355 - AluJb SINE Alu -3 309 1 250 248 44 53 chr12 134110100 134110198 -9676257 + MER45B DNA AcHobo 942 1040 0 255 325 8 16 chr12 134110387 134110513 -9675942 - L2 LINE L2 -1153 2161 2037 218 269 43 0 chr12 134111303 134111396 -9675059 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 * 229 208 0 0 chr12 134111357 134111410 -9675045 + (TA)n Simple_repeat Simple_repeat 2 54 0 231 139 0 0 chr12 134111410 134111446 -9675009 + L1M4 LINE L1 5892 5927 -257 486 273 0 11 chr12 134111447 134111645 -9674810 + (TA)n Simple_repeat Simple_repeat 1 200 -250 1943 86 0 4 chr12 134111645 134111888 -9674567 - AluSq SINE Alu -71 242 1 486 273 0 11 chr12 134111888 134111903 -9674552 + (TA)n Simple_repeat Simple_repeat 200 450 0 207 0 0 0 chr12 134112054 134112077 -9674378 + (TG)n Simple_repeat Simple_repeat 2 24 0 243 0 0 0 chr12 134112091 134112118 -9674337 + (CA)n Simple_repeat Simple_repeat 2 28 0 1539 145 100 85 chr12 134112130 134112460 -9673995 + L1MB7 LINE L1 5769 6108 -76 1583 127 135 0 chr12 134112460 134112720 -9673735 - AluSx SINE Alu -7 295 1 1539 145 100 85 chr12 134112720 134112789 -9673666 + L1MB7 LINE L1 6108 6174 -10 1169 148 37 42 chr12 134113135 134113352 -9673103 - AluJb SINE Alu -8 304 89 3388 222 55 17 chr12 134113381 134114219 -9672236 + L1MB4 LINE L1 5305 6174 -6 2130 131 0 0 chr12 134114235 134114525 -9671930 - AluJb SINE Alu -22 290 1 558 256 145 60 chr12 134114957 134115308 -9671147 + MLT1K LTR MaLR 208 588 0 1971 170 6 6 chr12 134116078 134116390 -9670065 + AluJb SINE Alu 1 312 0 369 62 0 0 chr12 134116412 134116460 -9669995 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 466 170 61 27 chr12 134116511 134116658 -9669797 + HAL1 LINE L1 979 1130 -1377 2160 118 0 0 chr12 134116758 134117046 -9669409 - AluSg SINE Alu -22 288 1 771 125 0 0 chr12 134117266 134117378 -9669077 - FLAM_C SINE Alu -12 131 20 1462 103 15 0 chr12 134119019 134119222 -9667233 - AluSg/x SINE Alu -7 305 100 1940 192 37 7 chr12 134119222 134119714 -9666741 - L1M4 LINE L1 -562 5622 5118 1664 174 11 18 chr12 134119776 134119911 -9666544 + AluJb SINE Alu 3 137 -175 1841 92 103 15 chr12 134119911 134120182 -9666273 + AluSq SINE Alu 1 295 -18 1664 174 11 18 chr12 134120182 134120358 -9666097 + AluJb SINE Alu 137 312 0 937 276 170 27 chr12 134120649 134121183 -9665272 - L2 LINE L2 -48 3265 2809 478 123 0 37 chr12 134121183 134121264 -9665191 - MADE1 DNA Mariner 0 80 3 937 276 170 27 chr12 134121264 134121315 -9665140 - L2 LINE L2 -504 2809 2767 1666 140 56 28 chr12 134121315 134121601 -9664854 - AluJo SINE Alu -18 294 1 937 276 170 27 chr12 134121601 134121956 -9664499 - L2 LINE L2 -546 2767 2181 355 298 71 7 chr12 134122219 134122360 -9664095 + HAL1b LINE L1 951 1100 -248 732 204 29 0 chr12 134122369 134122541 -9663914 - Charlie5 DNA MER1_type -28 2584 2408 204 366 181 0 chr12 134122674 134122895 -9663560 - MIR SINE MIR 0 262 2 478 244 35 0 chr12 134123713 134123885 -9662570 + (CA)n Simple_repeat Simple_repeat 2 179 0 423 233 47 6 chr12 134123924 134124096 -9662359 + (CA)n Simple_repeat Simple_repeat 2 180 0 211 195 44 0 chr12 134124204 134124317 -9662138 + (CA)n Simple_repeat Simple_repeat 2 119 0 454 300 104 19 chr12 134124446 134124706 -9661749 - L1ME LINE L1 -375 5746 5465 2266 73 42 0 chr12 134124740 134125026 -9661429 - AluY SINE Alu -13 298 1 2201 94 3 56 chr12 134125290 134125610 -9660845 - AluSx SINE Alu -9 303 1 1409 85 0 0 chr12 134126564 134126740 -9659715 - AluY SINE Alu -8 303 128 2615 47 3 0 chr12 134126916 134127217 -9659238 + AluY SINE Alu 1 302 -9 1965 167 0 10 chr12 134127290 134127596 -9658859 + AluJb SINE Alu 1 303 -9 2445 78 0 0 chr12 134127858 134128151 -9658304 + AluY SINE Alu 1 293 -18 1095 93 0 0 chr12 134128367 134128506 -9657949 + AluSq/x SINE Alu 1 139 -174 1127 225 16 0 chr12 134128515 134128759 -9657696 - MER33 DNA MER1_type -76 248 1 189 255 69 69 chr12 134128793 134129024 -9657431 - L2 LINE L2 -57 3215 2985 940 87 0 16 chr12 134129025 134129152 -9657303 + AluSp SINE Alu 1 125 -188 1892 149 0 33 chr12 134129765 134130066 -9656389 - AluJb SINE Alu -21 291 1 2640 64 0 0 chr12 134130357 134130668 -9655787 - AluY SINE Alu 0 311 1 1793 153 10 3 chr12 134130668 134130956 -9655499 - AluJb SINE Alu -22 290 1 346 258 261 8 chr12 134131107 134131375 -9655080 - L1MC4a LINE L1 -1642 6166 5831 1824 161 0 37 chr12 134131777 134132101 -9654354 + AluJb SINE Alu 1 312 0 1238 163 37 5 chr12 134132124 134132339 -9654116 - AluJo SINE Alu -90 222 1 2237 108 3 0 chr12 134132388 134132684 -9653771 + AluSc SINE Alu 2 298 -11 224 243 0 14 chr12 134132759 134132829 -9653626 + A-rich Low_complexity Low_complexity 2 70 0 753 105 0 177 chr12 134132925 134133106 -9653349 - AluJb SINE Alu 0 312 164 2343 76 10 0 chr12 134133896 134134185 -9652270 - AluSx SINE Alu -20 292 1 1725 122 22 71 chr12 134134188 134134499 -9651956 - AluJo SINE Alu -15 297 2 235 218 48 105 chr12 134134957 134135081 -9651374 + MIR SINE MIR 36 152 -110 907 128 54 0 chr12 134135953 134136101 -9650354 + L1PA15 LINE L1 6002 6157 -8 43 0 0 0 chr12 134136348 134136391 -9650064 + AT_rich Low_complexity Low_complexity 1 43 0 204 154 44 22 chr12 134136412 134136461 -9649994 + (TA)n Simple_repeat Simple_repeat 2 48 -92 2167 101 0 3 chr12 134136461 134136747 -9649708 + AluSg SINE Alu 1 285 -25 204 154 44 22 chr12 134136747 134136833 -9649622 + (TA)n Simple_repeat Simple_repeat 48 140 0 25 51 0 0 chr12 134136837 134136876 -9649579 + AT_rich Low_complexity Low_complexity 1 39 0 248 196 0 18 chr12 134136876 134136932 -9649523 + (TTA)n Simple_repeat Simple_repeat 2 56 0 783 251 28 43 chr12 134137120 134137375 -9649080 + MIR SINE MIR 9 259 -3 2088 119 27 10 chr12 134137482 134137777 -9648678 - AluJo SINE Alu -12 300 1 2037 133 3 3 chr12 134138170 134138470 -9647985 + AluSx SINE Alu 1 300 -12 3530 132 13 4 chr12 134138470 134139000 -9647455 + MER50 LTR ERV1 177 711 -23 386 209 0 0 chr12 134139000 134139067 -9647388 + L1M1 LINE L1 1816 1882 -5683 * 2909 150 77 10 chr12 134139060 134139679 -9646776 + L1M1 LINE L1 3115 3691 -3874 781 169 0 63 chr12 134139679 134139821 -9646634 + FLAM_C SINE Alu 1 133 0 2007 129 0 13 chr12 134139825 134139961 -9646494 + AluSx SINE Alu 1 137 -175 2300 83 0 3 chr12 134139961 134140263 -9646192 + AluY SINE Alu 1 301 -10 2007 129 0 13 chr12 134140263 134140429 -9646026 + AluSx SINE Alu 137 299 -13 2909 150 77 10 chr12 134140429 134140771 -9645684 + L1M1 LINE L1 3693 4154 -3411 1147 146 19 24 chr12 134141295 134141508 -9644947 + L1MB3 LINE L1 5970 6181 -2 586 270 61 0 chr12 134142003 134142151 -9644304 + MER5A DNA MER1_type 1 157 -32 749 207 72 51 chr12 134142151 134142388 -9644067 - L1MB8 LINE L1 0 6178 5937 240 179 0 0 chr12 134142388 134142427 -9644028 + MER5A DNA MER1_type 148 186 -3 282 271 135 15 chr12 134142443 134142576 -9643879 - L2 LINE L2 -559 2755 2607 1036 183 45 5 chr12 134142578 134142780 -9643675 + MER20 DNA MER1_type 1 210 -9 2074 98 0 14 chr12 134142802 134143097 -9643358 + AluSq SINE Alu 1 291 -22 918 127 0 0 chr12 134143117 134143251 -9643204 + AluJo SINE Alu 1 134 -178 468 333 177 24 chr12 134143262 134143799 -9642656 - L2 LINE L2 -749 2565 1947 1756 110 34 31 chr12 134144588 134144880 -9641575 - AluSx SINE Alu -19 293 1 2360 69 0 7 chr12 134144895 134145198 -9641257 - AluY SINE Alu -10 301 1 1801 157 0 16 chr12 134145506 134145812 -9640643 + AluJo SINE Alu 1 301 -11 1631 192 3 0 chr12 134146698 134146995 -9639460 + AluJb SINE Alu 1 298 -14 2225 85 0 0 chr12 134147389 134147682 -9638773 - AluSc SINE Alu -16 293 1 407 162 14 0 chr12 134147789 134147863 -9638592 - U3 snRNA snRNA -142 75 1 1767 134 40 0 chr12 134147944 134148221 -9638234 + AluSx SINE Alu 1 288 -24 391 281 98 41 chr12 134148272 134148638 -9637817 + L1ME2 LINE L1 5155 5388 -758 1166 179 53 80 chr12 134148653 134148890 -9637565 + MER63 DNA MER1_type 1 230 -831 1986 110 10 20 chr12 134148890 134149189 -9637266 + AluSx SINE Alu 1 296 -16 1166 179 53 80 chr12 134149189 134149253 -9637202 + MER63 DNA MER1_type 230 294 -767 386 284 66 20 chr12 134149295 134149492 -9636963 + L1MEc LINE L1 2188 2393 -4328 445 211 22 0 chr12 134149492 134149582 -9636873 + MLT1C LTR MaLR 1 92 -375 2123 127 0 0 chr12 134149599 134149906 -9636549 + AluSg SINE Alu 1 307 -3 2003 109 3 10 chr12 134149914 134150230 -9636225 + AluSq SINE Alu 1 313 0 338 286 20 20 chr12 134150240 134150454 -9636001 + L1MEc LINE L1 2419 2595 -3945 424 149 0 0 chr12 134150466 134150540 -9635915 + Alu SINE Alu 233 306 -4 1726 125 25 0 chr12 134150553 134150833 -9635622 + AluSx SINE Alu 12 298 -14 925 163 0 0 chr12 134150881 134151041 -9635414 - FRAM SINE Alu -1 175 16 434 212 10 0 chr12 134151048 134151147 -9635308 + L1MEc LINE L1 3023 3122 -3418 1137 172 105 4 chr12 134151155 134151393 -9635062 - MER58B DNA MER1_type 0 341 80 2281 90 0 3 chr12 134151424 134151724 -9634731 + AluSq SINE Alu 1 299 -14 291 188 59 35 chr12 134151750 134151835 -9634620 + L1ME2 LINE L1 5907 5993 -171 1285 133 0 5 chr12 134151902 134152097 -9634358 + AluSx SINE Alu 1 194 -118 739 236 78 54 chr12 134152102 134152360 -9634095 + L1MD2 LINE L1 6084 6347 -12 823 254 54 18 chr12 134152380 134152659 -9633796 + L1MB7 LINE L1 5896 6184 0 2485 50 0 0 chr12 134152967 134153269 -9633186 + AluY SINE Alu 1 302 -9 610 180 23 23 chr12 134153323 134153451 -9633004 + L2 LINE L2 3180 3307 -6 1599 164 0 21 chr12 134153452 134153591 -9632864 + AluJb SINE Alu 1 141 -173 1945 117 0 39 chr12 134153591 134153898 -9632557 + AluSx SINE Alu 1 295 -17 1599 164 0 21 chr12 134153898 134154078 -9632377 + AluJb SINE Alu 141 314 0 1974 90 7 14 chr12 134154286 134154565 -9631890 + AluSx SINE Alu 28 304 -8 668 152 15 45 chr12 134154665 134154797 -9631658 - FLAM_A SINE Alu -5 137 10 196 253 241 13 chr12 134154836 134154915 -9631540 - L2 LINE L2 -51 3262 3166 1570 137 41 58 chr12 134154982 134155131 -9631324 - AluJo SINE Alu -25 287 144 2330 71 3 0 chr12 134155131 134155425 -9631030 - AluSp SINE Alu -18 295 1 1570 137 41 58 chr12 134155425 134155567 -9630888 - AluJo SINE Alu -168 144 1 452 178 103 75 chr12 134155858 134156032 -9630423 + MER104 DNA MER2_type 1 179 -1 199 267 0 124 chr12 134156060 134156165 -9630290 - MIR SINE MIR -157 105 14 821 140 0 0 chr12 134156352 134156466 -9629989 + AluJo/FLAM SINE Alu 6 119 -193 2226 99 0 7 chr12 134156467 134156771 -9629684 - AluSx SINE Alu -10 302 1 205 324 10 39 chr12 134156953 134157055 -9629400 + MIR SINE MIR 127 225 -37 * 729 314 33 8 chr12 134157039 134157284 -9629171 + L2 LINE L2 2611 2861 -453 390 267 164 81 chr12 134157402 134157600 -9628855 + L2 LINE L2 2923 3103 -210 1688 140 10 3 chr12 134157600 134157892 -9628563 - AluJo SINE Alu -9 303 10 390 267 164 81 chr12 134157892 134158052 -9628403 + L2 LINE L2 3103 3311 -2 2630 17 0 0 chr12 134159094 134159393 -9627062 - AluYa5 SINE Alu -12 299 1 2102 106 13 16 chr12 134159758 134160070 -9626385 - AluSx SINE Alu -1 311 1 2024 120 0 17 chr12 134160071 134160234 -9626221 - AluSq SINE Alu -18 295 138 2288 71 3 0 chr12 134160234 134160531 -9625924 - AluY SINE Alu -13 298 1 2024 120 0 17 chr12 134160531 134160667 -9625788 - AluSq SINE Alu -175 138 1 193 296 42 42 chr12 134160909 134160980 -9625475 - L2 LINE L2 -13 3300 3230 365 117 33 33 chr12 134161225 134161285 -9625170 - AluJ/FLAM SINE Alu -242 60 1 720 242 6 25 chr12 134161293 134161454 -9625001 + L2 LINE L2 3156 3313 0 1134 182 11 71 chr12 134161903 134162172 -9624283 + MIR SINE MIR 10 262 0 2309 60 0 0 chr12 134162233 134162544 -9623911 - AluY SINE Alu 0 311 1 345 273 207 0 chr12 134163187 134163308 -9623147 - MER5A DNA MER1_type 0 189 44 1867 167 0 6 chr12 134163392 134163704 -9622751 + AluJb SINE Alu 1 310 -2 1301 171 0 20 chr12 134163746 134163998 -9622457 + AluJo SINE Alu 52 298 -14 301 281 84 32 chr12 134164025 134164192 -9622263 + MER102b DNA MER1_type 31 250 -1178 1794 164 0 23 chr12 134164192 134164491 -9621964 - AluJb SINE Alu -20 292 1 301 281 84 32 chr12 134164491 134164588 -9621867 + MER102b DNA MER1_type 250 341 0 2236 103 0 6 chr12 134165895 134166207 -9620248 - AluSx SINE Alu -2 310 1 1129 178 116 0 chr12 134166572 134166797 -9619658 + AluJb SINE Alu 47 297 -15 231 304 0 14 chr12 134166951 134167020 -9619435 - MER112 DNA MER1_type -176 84 17 1823 165 7 3 chr12 134167496 134167799 -9618656 + AluJo SINE Alu 1 304 -8 254 207 40 7 chr12 134167862 134168012 -9618443 + (TA)n Simple_repeat Simple_repeat 2 156 0 639 225 47 0 chr12 134168030 134168159 -9618296 - FRAM SINE Alu -41 135 1 1593 97 0 9 chr12 134168282 134168509 -9617946 + AluSq SINE Alu 1 225 -88 391 200 0 37 chr12 134168612 134168669 -9617786 - L1P5 LINE L1 -599 5552 5500 2049 105 3 29 chr12 134168669 134168984 -9617471 - AluSq SINE Alu -6 307 1 391 200 0 37 chr12 134168984 134169011 -9617444 - L1P5 LINE L1 -651 5500 5474 224 132 57 0 chr12 134169045 134169098 -9617357 + (TA)n Simple_repeat Simple_repeat 1 56 0 747 151 8 24 chr12 134169127 134169253 -9617202 - AluJb SINE Alu -187 125 2 418 297 143 11 chr12 134169702 134169877 -9616578 + MIR SINE MIR 48 245 -17 476 59 15 0 chr12 134171454 134171522 -9614933 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 233 92 50 chr12 134172331 134172451 -9614004 - L1MCa LINE L1 -4062 2364 2240 2356 57 0 3 chr12 134172748 134173044 -9613411 + AluY SINE Alu 1 295 -16 21 36 0 0 chr12 134173546 134173574 -9612881 + AT_rich Low_complexity Low_complexity 1 28 0 2360 54 17 0 chr12 134173739 134174035 -9612420 + AluSp SINE Alu 1 301 -12 308 259 114 57 chr12 134174530 134174881 -9611574 - L1ME4a LINE L1 -1 6120 5750 1589 138 53 18 chr12 134174898 134175180 -9611275 - AluJb SINE Alu -20 292 1 2195 71 7 0 chr12 134176037 134176349 -9610106 - AluY SINE Alu 0 314 1 201 310 88 9 chr12 134176593 134176706 -9609749 - L2 LINE L2 -280 2992 2871 237 159 330 23 chr12 134177570 134177658 -9608797 - MIR SINE MIR -60 148 34 677 151 162 28 chr12 134177813 134177992 -9608463 - MER112 DNA MER1_type -38 222 20 46 0 0 0 chr12 134178028 134178074 -9608381 + AT_rich Low_complexity Low_complexity 1 46 0 282 237 54 43 chr12 134178596 134178689 -9607766 + MLT1J LTR MaLR 399 492 -19 268 111 0 0 chr12 134178660 134178696 -9607759 + MLT1L LTR MaLR 569 604 -11 * 761 140 15 37 chr12 134179214 134179350 -9607105 - FLAM_C SINE Alu 0 133 1 410 281 37 30 chr12 134179366 134179501 -9606954 - MER5A DNA MER1_type -45 144 9 1388 159 13 13 chr12 134179781 134180008 -9606447 - MER46A DNA MER2_type -7 229 3 536 292 129 10 chr12 134180012 134180221 -9606234 - MIR SINE MIR -25 237 4 2112 120 3 3 chr12 134180853 134181161 -9605294 + AluSg SINE Alu 1 308 -2 2202 45 73 0 chr12 134181162 134181450 -9605005 + AluY SINE Alu 1 309 -2 368 236 64 0 chr12 134182196 134182306 -9604149 + L1ME4a LINE L1 5967 6083 -38 1619 196 10 3 chr12 134182380 134182681 -9603774 + AluJb SINE Alu 2 304 -8 1681 181 10 0 chr12 134182800 134183109 -9603346 + AluJb SINE Alu 1 312 0 244 312 96 57 chr12 134183504 134183581 -9602874 + MIR SINE MIR 2 75 -133 1043 220 23 14 chr12 134183581 134183799 -9602656 + MER58A DNA MER1_type 5 224 0 244 312 96 57 chr12 134183799 134183878 -9602577 + MIR SINE MIR 75 164 -44 661 241 89 67 chr12 134183884 134184200 -9602255 + MER102a DNA MER1_type 2 324 -6 1895 226 48 25 chr12 134184784 134185176 -9601279 + MER82 DNA MER2_type 1 475 -178 1850 123 55 3 chr12 134185176 134185469 -9600986 + AluJb SINE Alu 1 308 -4 1895 226 48 25 chr12 134185469 134185653 -9600802 + MER82 DNA MER2_type 475 653 0 809 151 0 0 chr12 134185680 134185806 -9600649 - FLAM_C SINE Alu -17 126 1 248 284 37 0 chr12 134186367 134186448 -9600007 + MIR3 SINE MIR 125 208 0 868 175 20 65 chr12 134186669 134186728 -9599727 + MER20 DNA MER1_type 29 89 -130 1546 172 16 26 chr12 134186728 134187036 -9599419 + AluJo SINE Alu 1 305 -7 868 175 20 65 chr12 134187036 134187176 -9599279 + MER20 DNA MER1_type 89 219 0 1300 183 68 10 chr12 134187188 134187483 -9598972 - MER33 DNA MER1_type -4 320 9 198 203 266 0 chr12 134187491 134187570 -9598885 + L2 LINE L2 3150 3249 -23 1075 212 124 12 chr12 134187666 134187925 -9598530 - AluJo SINE Alu -13 289 2 1996 123 11 0 chr12 134187951 134188236 -9598219 + AluSx SINE Alu 1 288 -24 197 33 33 0 chr12 134188241 134188271 -9598184 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 889 250 192 22 chr12 134188272 134188362 -9598093 + L2 LINE L2 2355 2428 -885 2236 85 3 3 chr12 134188362 134188669 -9597786 + AluSg1 SINE Alu 1 307 -2 889 250 192 22 chr12 134188669 134189382 -9597073 + L2 LINE L2 2428 3313 0 661 210 28 7 chr12 134189426 134189569 -9596886 - MIR SINE MIR -71 191 46 2209 39 7 0 chr12 134190507 134190821 -9595634 - AluY SINE Alu 0 316 1 193 231 0 0 chr12 134190821 134190860 -9595595 - L2 LINE L2 -5 3308 3270 3183 127 87 49 chr12 134190905 134191157 -9595298 + MER39B LTR ERV1 1 242 -411 1986 91 56 3 chr12 134191157 134191443 -9595012 + AluSg SINE Alu 1 301 -9 1790 126 29 4 chr12 134191450 134191763 -9594692 + AluSx SINE Alu 1 320 0 1932 101 42 10 chr12 134191763 134192051 -9594404 + AluSx SINE Alu 1 297 -15 3183 127 87 49 chr12 134192051 134192417 -9594038 + MER39B LTR ERV1 246 653 0 276 273 171 37 chr12 134192474 134192527 -9593928 + L2 LINE L2 3102 3147 -166 255 31 0 0 chr12 134192527 134192559 -9593896 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 273 171 37 chr12 134192559 134192692 -9593763 + L2 LINE L2 3147 3313 0 1562 184 20 10 chr12 134192822 134193115 -9593340 + AluJb SINE Alu 1 296 -16 702 159 87 0 chr12 134193115 134193241 -9593214 + AluJb SINE Alu 159 295 -17 279 328 124 27 chr12 134193307 134193493 -9592962 + MIR SINE MIR 59 262 0 231 306 10 41 chr12 134193547 134193645 -9592810 + MIR SINE MIR 55 149 -59 23 0 0 0 chr12 134194133 134194156 -9592299 + AT_rich Low_complexity Low_complexity 1 23 0 1888 129 2 114 chr12 134195571 134195965 -9590490 - MER47A DNA MER2_type -1 365 16 1274 193 13 0 chr12 134196040 134196273 -9590182 - AluJo SINE Alu -41 271 36 223 255 96 75 chr12 134196288 134196382 -9590073 - MIR3 SINE MIR -28 180 85 2079 128 7 0 chr12 134196802 134197108 -9589347 - AluSx SINE Alu -4 308 1 28 29 0 0 chr12 134197114 134197149 -9589306 + AT_rich Low_complexity Low_complexity 1 35 0 2202 107 3 0 chr12 134197149 134197449 -9589006 - AluSp SINE Alu -12 301 1 631 210 40 0 chr12 134197451 134197575 -9588880 - FLAM_A SINE Alu -1 132 4 2349 74 0 0 chr12 134197621 134197918 -9588537 + AluY SINE Alu 1 297 -14 1381 158 3 49 chr12 134197971 134198255 -9588200 + AluJb SINE Alu 23 293 -19 1044 79 14 0 chr12 134198258 134198397 -9588058 + AluSc SINE Alu 1 141 -168 188 121 0 30 chr12 134198447 134198480 -9587975 - MIR SINE MIR -92 116 85 714 123 62 7 chr12 134198646 134198792 -9587663 + AluSg/x SINE Alu 144 297 -15 340 237 130 51 chr12 134199024 134199201 -9587254 + MER102b DNA MER1_type 145 335 -6 1909 224 48 25 chr12 134199785 134200177 -9586278 + MER82 DNA MER2_type 1 475 -178 1830 127 55 3 chr12 134200177 134200469 -9585986 + AluJb SINE Alu 1 307 -5 1909 224 48 25 chr12 134200469 134200653 -9585802 + MER82 DNA MER2_type 475 653 0 824 143 0 0 chr12 134200680 134200806 -9585649 - FLAM_C SINE Alu -17 126 1 226 296 37 0 chr12 134201369 134201450 -9585005 + MIR3 SINE MIR 125 208 0 856 173 20 74 chr12 134201671 134201730 -9584725 + MER20 DNA MER1_type 29 90 -129 1429 175 18 28 chr12 134201730 134202037 -9584418 + AluJo SINE Alu 1 304 0 856 173 20 74 chr12 134202037 134202178 -9584277 + MER20 DNA MER1_type 90 219 0 1300 183 68 10 chr12 134202190 134202485 -9583970 - MER33 DNA MER1_type -4 320 9 198 203 266 0 chr12 134202493 134202572 -9583883 + L2 LINE L2 3150 3249 -23 1075 212 124 12 chr12 134202668 134202927 -9583528 - AluJo SINE Alu -13 289 2 2044 116 11 0 chr12 134202953 134203238 -9583217 + AluSx SINE Alu 1 288 -24 197 33 33 0 chr12 134203243 134203273 -9583182 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 884 258 192 21 chr12 134203274 134203364 -9583091 + L2 LINE L2 2355 2428 -885 2250 82 3 3 chr12 134203364 134203669 -9582786 + AluSg1 SINE Alu 1 305 -4 884 258 192 21 chr12 134203669 134204381 -9582074 + L2 LINE L2 2428 3313 0 661 210 28 7 chr12 134204425 134204568 -9581887 - MIR SINE MIR -71 191 46 2167 50 7 0 chr12 134205506 134205820 -9580635 - AluY SINE Alu 0 316 1 193 231 0 0 chr12 134205820 134205859 -9580596 - L2 LINE L2 -5 3308 3270 3005 132 90 50 chr12 134205912 134206156 -9580299 + MER39B LTR ERV1 8 241 -412 2021 91 56 0 chr12 134206156 134206441 -9580014 + AluSg SINE Alu 1 301 -9 1776 129 29 4 chr12 134206448 134206761 -9579694 + AluSx SINE Alu 1 320 0 1926 100 42 14 chr12 134206761 134207050 -9579405 + AluSx SINE Alu 1 297 -15 3005 132 90 50 chr12 134207050 134207416 -9579039 + MER39B LTR ERV1 245 653 0 276 273 171 37 chr12 134207473 134207526 -9578929 + L2 LINE L2 3102 3147 -166 255 31 0 0 chr12 134207526 134207558 -9578897 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 273 171 37 chr12 134207558 134207691 -9578764 + L2 LINE L2 3147 3313 0 1577 181 20 10 chr12 134207821 134208114 -9578341 + AluJb SINE Alu 1 296 -16 702 159 87 0 chr12 134208114 134208240 -9578215 + AluJb SINE Alu 159 295 -17 279 328 124 27 chr12 134208306 134208492 -9577963 + MIR SINE MIR 59 262 0 231 306 10 41 chr12 134208546 134208644 -9577811 + MIR SINE MIR 55 149 -59 23 0 0 0 chr12 134209132 134209155 -9577300 + AT_rich Low_complexity Low_complexity 1 23 0 1888 129 2 114 chr12 134210569 134210963 -9575492 - MER47A DNA MER2_type -1 365 16 1274 193 13 0 chr12 134211038 134211271 -9575184 - AluJo SINE Alu -41 271 36 223 255 96 75 chr12 134211286 134211380 -9575075 - MIR3 SINE MIR -28 180 85 2079 128 7 0 chr12 134211800 134212106 -9574349 - AluSx SINE Alu -4 308 1 28 29 0 0 chr12 134212112 134212147 -9574308 + AT_rich Low_complexity Low_complexity 1 35 0 1963 94 0 4 chr12 134212147 134212413 -9574042 - AluSq SINE Alu -12 301 37 377 206 15 0 chr12 134213370 134213438 -9573017 - AluJ/F(R)AM SINE Alu -98 204 136 2235 94 0 0 chr12 134213439 134213736 -9572719 - AluSc SINE Alu -12 297 1 2233 93 3 0 chr12 134214235 134214536 -9571919 - AluSx SINE Alu -10 302 1 2240 96 0 7 chr12 134214936 134215237 -9571218 - AluSx SINE Alu -13 299 1 1037 141 91 25 chr12 134215240 134215438 -9571017 - AluJo SINE Alu -17 295 85 181 27 81 27 chr12 134215463 134215500 -9570955 + A-rich Low_complexity Low_complexity 5 43 0 815 236 62 10 chr12 134216387 134216595 -9569860 - MER20 DNA MER1_type 0 219 1 1569 127 75 4 chr12 134217836 134218103 -9568352 + AluSx SINE Alu 27 312 0 2296 80 7 0 chr12 134218588 134218890 -9567565 + AluSx SINE Alu 1 304 -8 232 306 45 27 chr12 134218924 134219035 -9567420 + MIR3 SINE MIR 91 203 -5 779 154 8 0 chr12 134219174 134219297 -9567158 + MLT1F1 LTR MaLR 392 515 -52 269 352 22 0 chr12 134219393 134219484 -9566971 + MIR3 SINE MIR 11 103 -105 21 36 0 0 chr12 134220263 134220291 -9566164 + GC_rich Low_complexity Low_complexity 1 28 0 248 120 20 0 chr12 134220646 134220696 -9565759 + (CCG)n Simple_repeat Simple_repeat 2 52 0 2095 90 0 37 chr12 134221024 134221201 -9565254 - AluSx SINE Alu -2 310 149 2165 74 13 13 chr12 134221201 134221510 -9564945 - AluSg SINE Alu -1 309 1 2095 90 0 37 chr12 134221510 134221654 -9564801 - AluSx SINE Alu -163 149 1 925 122 14 0 chr12 134221678 134221826 -9564629 - FRAM SINE Alu -10 166 17 410 233 28 64 chr12 134221876 134222024 -9564431 + L1ME3 LINE L1 5975 6112 -50 1939 127 0 7 chr12 134222024 134222323 -9564132 - AluSq SINE Alu -15 298 2 410 233 28 64 chr12 134222323 134222365 -9564090 + L1ME3 LINE L1 6112 6154 -8 248 281 129 48 chr12 134222382 134222592 -9563863 + L2 LINE L2 2857 3083 -189 329 211 119 37 chr12 134222758 134222867 -9563588 + MIR SINE MIR 33 150 -58 2386 125 24 68 chr12 134223020 134223086 -9563369 - Tigger2 DNA MER2_type 0 2718 2651 2210 85 0 0 chr12 134223086 134223381 -9563074 - AluSx SINE Alu -17 295 1 2386 125 24 68 chr12 134223381 134223406 -9563049 - Tigger2 DNA MER2_type -67 2651 2626 2201 91 17 0 chr12 134223406 134223704 -9562751 - AluSq SINE Alu -10 303 1 2386 125 24 68 chr12 134223704 134223768 -9562687 - Tigger2 DNA MER2_type -92 2626 2561 2029 141 0 0 chr12 134223768 134224080 -9562375 - AluSx SINE Alu 0 312 1 2386 125 24 68 chr12 134224080 134224378 -9562077 - Tigger2 DNA MER2_type -157 2561 2283 2033 127 0 0 chr12 134224378 134224685 -9561770 - AluSx SINE Alu -5 307 1 444 156 0 0 chr12 134224688 134224752 -9561703 - Tigger2 DNA MER2_type -2654 64 1 2304 65 0 29 chr12 134224957 134225265 -9561190 - AluY SINE Alu -10 301 3 2124 88 0 32 chr12 134225267 134225575 -9560880 - AluSx SINE Alu -14 298 1 1299 171 50 81 chr12 134225627 134225949 -9560506 - AluJo SINE Alu 0 312 1 180 0 0 0 chr12 134225949 134225969 -9560486 + (T)n Simple_repeat Simple_repeat 1 20 0 1723 147 0 34 chr12 134226119 134226436 -9560019 + AluJo SINE Alu 1 307 0 258 198 0 158 chr12 134226503 134226604 -9559851 - MER102b DNA MER1_type -3 338 254 1988 117 34 0 chr12 134226975 134227266 -9559189 - AluSx SINE Alu -11 301 1 2321 88 0 3 chr12 134227278 134227585 -9558870 - AluSq SINE Alu -7 306 1 230 167 0 62 chr12 134227674 134227722 -9558733 + L2 LINE L2 3268 3312 -1 2308 133 100 42 chr12 134227824 134227887 -9558568 - L1MB7 LINE L1 -14 6170 6112 2036 107 0 33 chr12 134227887 134228187 -9558268 + AluSx SINE Alu 9 298 -14 2308 133 100 42 chr12 134228187 134228575 -9557880 - L1MB7 LINE L1 -72 6112 5693 1555 152 25 0 chr12 134228575 134228819 -9557636 + AluSx SINE Alu 1 250 -62 724 186 0 0 chr12 134228819 134228932 -9557523 - AluSq/x SINE Alu -199 114 2 1566 190 138 17 chr12 134228947 134229295 -9557160 + MLT1F LTR MaLR 153 542 0 303 254 0 0 chr12 134229300 134229367 -9557088 + LTR33A LTR ERVL 441 507 -16 1841 177 55 0 chr12 134229446 134229774 -9556681 - MER7A DNA MER2_type 0 346 3 333 158 74 84 chr12 134230152 134230204 -9556251 - MLT1K LTR MaLR -100 488 436 1893 121 14 7 chr12 134230204 134230501 -9555954 + AluSx SINE Alu 1 299 -13 333 158 74 84 chr12 134230501 134230543 -9555912 - MLT1K LTR MaLR -152 436 395 233 98 24 0 chr12 134230543 134230584 -9555871 + (TC)n Simple_repeat Simple_repeat 2 43 0 1833 146 3 7 chr12 134230643 134230944 -9555511 - AluSx SINE Alu -12 300 1 292 179 75 0 chr12 134230957 134231024 -9555431 + MLT1J1 LTR MaLR 248 319 -127 642 208 0 0 chr12 134232137 134232281 -9554174 + (CA)n Simple_repeat Simple_repeat 1 144 0 180 0 0 0 chr12 134232396 134232416 -9554039 + (T)n Simple_repeat Simple_repeat 1 20 0 1821 149 0 40 chr12 134233665 134233988 -9552467 + AluJb SINE Alu 1 310 -2 259 178 0 67 chr12 134234217 134234307 -9552148 + T-rich Low_complexity Low_complexity 6 89 0 242 186 43 43 chr12 134234336 134234476 -9551979 + (TTATA)n Simple_repeat Simple_repeat 1 140 0 * 313 193 64 12 chr12 134234408 134234579 -9551876 + (TA)n Simple_repeat Simple_repeat 1 180 0 24 53 0 0 chr12 134234579 134234617 -9551838 + AT_rich Low_complexity Low_complexity 1 38 0 195 184 0 0 chr12 134234617 134234655 -9551800 + (TATG)n Simple_repeat Simple_repeat 3 40 0 189 0 0 0 chr12 134234655 134234676 -9551779 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 1924 113 32 3 chr12 134234676 134234958 -9551497 - AluSq SINE Alu -23 290 1 311 217 134 51 chr12 134234958 134235115 -9551340 + L1MC5 LINE L1 7591 7760 -201 234 240 17 40 chr12 134234967 134235142 -9551313 + (TTATA)n Simple_repeat Simple_repeat 4 174 0 * 21 71 0 0 chr12 134235115 134235157 -9551298 + AT_rich Low_complexity Low_complexity 1 42 0 * 259 153 28 14 chr12 134235157 134235229 -9551226 + (TTTAA)n Simple_repeat Simple_repeat 3 75 0 40 37 0 0 chr12 134235237 134235291 -9551164 + AT_rich Low_complexity Low_complexity 1 54 0 1671 178 43 38 chr12 134235704 134235775 -9550680 - L1MB3 LINE L1 -1 6182 6113 2390 95 0 0 chr12 134235775 134236079 -9550376 + AluSc SINE Alu 1 304 -5 1671 178 43 38 chr12 134236079 134236407 -9550048 - L1MB3 LINE L1 -70 6113 5769 3238 169 39 14 chr12 134236803 134237426 -9549029 + L1MB7 LINE L1 5535 6172 -12 1909 139 20 7 chr12 134238079 134238373 -9548082 + AluJo SINE Alu 1 298 -14 369 307 31 8 chr12 134239657 134239784 -9546671 - MIR SINE MIR -47 215 86 1384 244 96 20 chr12 134240198 134240645 -9545810 - L1MC4 LINE L1 -365 7677 7197 378 107 0 0 chr12 134240651 134240707 -9545748 + (TCC)n Simple_repeat Simple_repeat 2 57 0 1842 180 6 3 chr12 134240707 134241018 -9545437 - AluJo SINE Alu 0 312 1 1405 150 71 28 chr12 134241056 134241382 -9545073 + L1MC4 LINE L1 7703 8042 0 306 229 0 0 chr12 134241643 134241704 -9544751 - Charlie8 DNA MER1_type 0 2417 2357 1235 206 122 46 chr12 134241720 134242153 -9544302 - MLT1C LTR MaLR -1 466 1 551 274 14 0 chr12 134242313 134242459 -9543996 - Charlie8 DNA MER1_type -2197 220 73 2060 122 0 3 chr12 134242460 134242748 -9543707 - AluSg SINE Alu -1 309 23 471 282 165 36 chr12 134243114 134243727 -9542728 - HAL1 LINE L1 -4 2503 1812 337 154 197 48 chr12 134243885 134244073 -9542382 + L1ME4a LINE L1 5903 6118 -3 189 353 82 25 chr12 134244435 134244557 -9541898 + L3 LINE CR1 558 686 -891 2712 36 0 0 chr12 134244557 134244859 -9541596 - AluY SINE Alu 0 311 10 988 185 21 11 chr12 134244937 134245126 -9541329 - MER58A DNA MER1_type 0 224 34 208 309 198 27 chr12 134247832 134248130 -9538325 + L2 LINE L2 1331 1679 -1635 226 286 83 12 chr12 134248297 134248381 -9538074 + L2 LINE L2 3122 3211 -61 2022 222 76 25 chr12 134249943 134250457 -9535998 - MLT1F LTR MaLR -2 540 1 408 119 17 0 chr12 134250917 134250976 -9535479 + MER5A DNA MER1_type 6 65 -124 941 183 0 18 chr12 134250990 134251159 -9535296 + FRAM SINE Alu 2 167 -9 435 211 18 46 chr12 134251159 134251268 -9535187 + MER5A DNA MER1_type 83 188 -1 285 304 34 72 chr12 134251492 134251630 -9534825 - MIR SINE MIR -64 144 42 556 239 6 6 chr12 134252583 134252763 -9533692 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 822 171 0 0 chr12 134252815 134252967 -9533488 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 276 224 0 0 chr12 134253185 134253252 -9533203 + (TCCA)n Simple_repeat Simple_repeat 2 68 0 380 261 169 52 chr12 134253256 134253505 -9532950 - L2 LINE L2 0 3313 3036 626 147 52 27 chr12 134253877 134254090 -9532365 - ORSL DNA AcHobo 0 275 1 440 278 68 31 chr12 134254170 134254332 -9532123 + MIR SINE MIR 93 260 -2 226 241 17 86 chr12 134254428 134254544 -9531911 - MER102a DNA MER1_type -2 328 221 2094 143 16 0 chr12 134254676 134254984 -9531471 + AluSq SINE Alu 1 313 0 1906 146 14 3 chr12 134255006 134255293 -9531162 + AluJb SINE Alu 1 290 -22 1667 197 18 64 chr12 134255293 134255637 -9530818 - L1MB5 LINE L1 -20 6154 5833 2265 109 0 13 chr12 134255637 134255941 -9530514 - AluSx SINE Alu -12 300 1 1667 197 18 64 chr12 134255941 134256032 -9530423 - L1MB5 LINE L1 -341 5833 5739 1910 164 10 16 chr12 134256940 134257251 -9529204 + AluJo SINE Alu 1 309 -3 2338 111 0 3 chr12 134258565 134258862 -9527593 + AluSx SINE Alu 1 296 -16 1231 235 73 53 chr12 134259198 134259369 -9527086 + L1MD2 LINE L1 5856 6022 -337 1769 155 18 4 chr12 134259369 134259647 -9526808 + AluJo SINE Alu 1 282 -30 1231 235 73 53 chr12 134259647 134259969 -9526486 + L1MD2 LINE L1 6022 6359 0 387 324 40 14 chr12 134260839 134260987 -9525468 + MIR SINE MIR 79 230 -32 490 269 35 75 chr12 134262906 134263133 -9523322 + MER102a DNA MER1_type 92 309 -21 1052 245 98 70 chr12 134263582 134264084 -9522371 + MLT2B3 LTR ERVL 1 516 -38 962 83 17 28 chr12 134264084 134264265 -9522190 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 424 143 0 22 chr12 134264265 134264356 -9522099 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 258 173 19 0 chr12 134264383 134264435 -9522020 + MLT2B3 LTR ERVL 468 520 0 866 215 92 113 chr12 134264456 134264645 -9521810 - LTR40a LTR ERVL -103 416 238 724 189 8 23 chr12 134264645 134264777 -9521678 + FLAM_A SINE Alu 1 130 -3 866 215 92 113 chr12 134264777 134264977 -9521478 - LTR40a LTR ERVL -281 238 35 1554 166 63 11 chr12 134266139 134266431 -9520024 + AluJo SINE Alu 1 306 0 1936 173 0 3 chr12 134266497 134266797 -9519658 + AluJo SINE Alu 1 299 -13 231 299 30 15 chr12 134266851 134266985 -9519470 - L1MB5 LINE L1 -2321 5487 5352 2189 138 19 24 chr12 134267092 134267469 -9518986 + THE1C LTR MaLR 1 375 0 2245 113 0 10 chr12 134267559 134267888 -9518567 + AluSx SINE Alu 1 312 0 263 309 64 0 chr12 134268462 134268556 -9517899 + L2 LINE L2 3168 3267 -5 269 229 86 0 chr12 134268556 134268626 -9517829 - MER63 DNA MER1_type -8 1053 978 424 147 112 78 chr12 134268639 134268755 -9517700 - MER63 DNA MER1_type -90 746 1 652 220 68 0 chr12 134269210 134269387 -9517068 - MER5A DNA MER1_type 0 189 1 232 69 0 0 chr12 134269418 134269447 -9517008 + U6 snRNA snRNA 1 29 -78 2017 136 14 3 chr12 134269453 134269747 -9516708 + AluJb SINE Alu 3 299 -13 337 352 162 14 chr12 134270437 134270653 -9515802 + MIR SINE MIR 14 261 -1 1022 163 6 6 chr12 134270868 134271034 -9515421 + FRAM SINE Alu 1 166 0 1101 173 24 0 chr12 134271219 134271427 -9515028 + MER20 DNA MER1_type 7 219 0 1369 66 0 0 chr12 134271620 134271786 -9514669 + AluY SINE Alu 146 311 0 977 234 9 22 chr12 134271933 134272159 -9514296 - MIR SINE MIR -38 224 2 183 42 0 0 chr12 134272197 134272221 -9514234 + (T)n Simple_repeat Simple_repeat 1 24 0 1858 164 13 7 chr12 134272326 134272624 -9513831 + AluJb SINE Alu 1 300 -12 455 288 26 42 chr12 134273151 134273342 -9513113 + L2 LINE L2 3125 3312 -1 274 256 33 33 chr12 134273356 134273446 -9513009 + L1ME4a LINE L1 5670 5759 -362 482 305 55 55 chr12 134273462 134273548 -9512907 + L1ME4a LINE L1 5818 5903 -218 1586 150 6 96 chr12 134273548 134273861 -9512594 + AluJo SINE Alu 17 301 -11 482 305 55 55 chr12 134273861 134274066 -9512389 + L1ME4a LINE L1 5902 6109 -12 1457 114 9 50 chr12 134274066 134274286 -9512169 - AluSx SINE Alu -1 311 101 2222 102 3 3 chr12 134274286 134274579 -9511876 + AluY SINE Alu 1 293 -18 806 93 9 9 chr12 134274584 134274692 -9511763 - AluSx SINE Alu -196 117 10 202 269 11 65 chr12 134274828 134274921 -9511534 + MIR3 SINE MIR 4 91 -117 467 334 88 7 chr12 134274938 134275246 -9511209 + L1ME4a LINE L1 5592 5924 -197 604 175 42 8 chr12 134275381 134275501 -9510954 - L1M3 LINE L1 -487 5693 5570 1861 146 10 10 chr12 134275516 134275818 -9510637 + AluJb SINE Alu 1 302 -10 965 145 30 18 chr12 134276280 134276446 -9510009 - AluJb SINE Alu -8 304 137 272 245 20 41 chr12 134277881 134277979 -9508476 + LTR67 LTR ERVL 460 555 -2 190 347 57 32 chr12 134278400 134278524 -9507931 - L2 LINE L2 0 3272 3146 180 333 36 12 chr12 134278620 134278704 -9507751 + L2 LINE L2 2564 2649 -665 1192 253 72 21 chr12 134278705 134279081 -9507374 - MLT1K LTR MaLR -21 567 173 1236 224 92 32 chr12 134279649 134279739 -9506716 - MLT1C LTR MaLR 0 609 526 2417 89 0 0 chr12 134279739 134280032 -9506423 - AluSx SINE Alu -19 293 1 1236 224 92 32 chr12 134280032 134280363 -9506092 - MLT1C LTR MaLR -83 526 59 329 252 8 79 chr12 134281316 134281443 -9505012 - MIR SINE MIR -99 163 46 671 259 63 5 chr12 134282732 134282921 -9503534 + MIR SINE MIR 63 262 0 1485 283 40 62 chr12 134283150 134283846 -9502609 - L1MC4a LINE L1 -1868 5940 5260 2282 81 0 47 chr12 134283984 134284304 -9502151 - AluY SINE Alu -6 305 1 2332 106 0 10 chr12 134284312 134284614 -9501841 - AluSx SINE Alu -13 299 1 369 304 36 50 chr12 134284616 134284836 -9501619 - L1MC4a LINE L1 -1022 5124 4908 246 293 141 0 chr12 134285637 134285736 -9500719 - MIR3 SINE MIR -6 202 90 315 182 53 0 chr12 134286152 134286322 -9500133 + CT-rich Low_complexity Low_complexity 2 180 0 264 167 0 0 chr12 134286925 134286973 -9499482 + (ATG)n Simple_repeat Simple_repeat 3 50 0 194 355 65 0 chr12 134287000 134287093 -9499362 + MER5A DNA MER1_type 43 141 -48 1506 119 171 28 chr12 134288998 134289250 -9497205 + AluJb SINE Alu 1 288 -24 949 163 101 0 chr12 134289409 134289587 -9496868 + MER58A DNA MER1_type 3 198 -26 748 241 103 5 chr12 134289923 134290126 -9496329 - MER58A DNA MER1_type -1 223 1 1598 112 0 35 chr12 134290476 134290529 -9495926 + AluJo SINE Alu 85 138 -174 2310 114 0 3 chr12 134290529 134290826 -9495629 + AluSx SINE Alu 1 296 -16 1598 112 0 35 chr12 134290826 134291004 -9495451 + AluJo SINE Alu 138 308 -4 866 202 35 25 chr12 134291111 134291314 -9495141 - MER20 DNA MER1_type 0 219 15 914 194 68 5 chr12 134292152 134292358 -9494097 + MER20 DNA MER1_type 1 219 0 2134 219 77 21 chr12 134292437 134292554 -9493901 + MER68 LTR ERV1 1 110 -452 2549 114 49 0 chr12 134292554 134292959 -9493496 + MSTA LTR MaLR 2 426 -2 2134 219 77 21 chr12 134292959 134293371 -9493084 + MER68 LTR ERV1 110 560 -2 244 327 85 20 chr12 134293523 134293676 -9492779 + L2 LINE L2 2135 2297 -1017 1979 174 78 23 chr12 134293684 134294120 -9492335 + MLT1C LTR MaLR 8 467 0 715 301 54 43 chr12 134294196 134294502 -9491953 + L2 LINE L2 2394 2708 -606 1497 200 10 59 chr12 134294502 134294807 -9491648 + AluJo SINE Alu 1 290 -22 715 301 54 43 chr12 134294807 134294942 -9491513 + L2 LINE L2 2708 2840 -474 305 344 11 38 chr12 134294943 134295126 -9491329 + MLT1D LTR MaLR 9 186 -440 776 235 92 0 chr12 134295191 134295387 -9491068 + MLT1D LTR MaLR 283 496 -9 340 269 115 75 chr12 134295401 134295654 -9490801 + L2 LINE L2 3001 3263 -50 272 172 16 16 chr12 134295746 134295810 -9490645 + L1ME2 LINE L1 6091 6154 -10 250 366 9 0 chr12 134296250 134296362 -9490093 + MIR SINE MIR 1 113 -149 510 221 65 139 chr12 134296362 134296781 -9489674 - MLT1D LTR MaLR -2 388 1 300 156 0 31 chr12 134296784 134296848 -9489607 + MIR SINE MIR 117 178 -84 1621 147 94 35 chr12 134296859 134297045 -9489410 - AluJb SINE Alu -9 303 93 2569 70 0 0 chr12 134297045 134297347 -9489108 + AluY SINE Alu 2 303 -8 1621 147 94 35 chr12 134297347 134297446 -9489009 - AluJb SINE Alu -219 93 1 180 200 0 0 chr12 134298567 134298607 -9487848 + (CA)n Simple_repeat Simple_repeat 2 41 0 390 352 124 5 chr12 134299185 134299395 -9487060 + L1ME4a LINE L1 5336 5570 -594 374 302 48 51 chr12 134299488 134299803 -9486652 + L1ME4a LINE L1 5545 5858 -263 353 253 0 0 chr12 134299890 134299969 -9486486 + Tigger5 DNA MER2_type 1 79 -2244 423 122 40 14 chr12 134299971 134300045 -9486410 - Tigger5 DNA MER2_type -6 2317 2242 407 189 27 0 chr12 134300035 134300109 -9486346 + Tigger5 DNA MER2_type 2242 2317 -6 * 333 280 87 73 chr12 134300165 134300315 -9486140 + L1ME4a LINE L1 5967 6118 -3 1620 206 3 40 chr12 134300350 134300728 -9485727 + MLT1A1 LTR MaLR 1 364 -1 1799 78 0 5 chr12 134300818 134301037 -9485418 + AluSg/x SINE Alu 65 282 -30 231 287 64 0 chr12 134301312 134301406 -9485049 - HAL1b LINE L1 -12 1336 1237 349 210 0 0 chr12 134301431 134301493 -9484962 - Tigger5 DNA MER2_type -6 2317 2256 2336 208 57 58 chr12 134301736 134302270 -9484185 + L1MB8 LINE L1 5507 6041 -137 2276 107 10 0 chr12 134302270 134302578 -9483877 - AluSx SINE Alu -1 311 1 2336 208 57 58 chr12 134302578 134302716 -9483739 + L1MB8 LINE L1 6041 6178 0 329 130 19 0 chr12 134302918 134302972 -9483483 + Tigger5 DNA MER2_type 1 55 -2268 * 455 229 38 0 chr12 134302964 134303069 -9483386 + Tigger5 DNA MER2_type 2215 2323 0 7085 47 2 0 chr12 134303508 134304435 -9482020 + L1PA5 LINE L1 5226 6154 0 1854 149 0 18 chr12 134304449 134304753 -9481702 + AluJb SINE Alu 7 305 0 2299 216 14 20 chr12 134307696 134308257 -9478198 - L1MB7 LINE L1 -5 6179 5622 735 150 39 0 chr12 134309534 134309661 -9476794 - FLAM_C SINE Alu -1 132 1 669 278 43 9 chr12 134310355 134310585 -9475870 - MLT1K LTR MaLR -7 581 344 236 269 115 0 chr12 134310666 134310770 -9475685 - MLT1K LTR MaLR -356 232 117 2221 123 7 7 chr12 134311420 134311730 -9474725 - AluJb SINE Alu -2 310 1 2773 224 12 8 chr12 134311790 134312429 -9474026 - L1MB7 LINE L1 -1 6183 5542 700 238 127 48 chr12 134312469 134312639 -9473816 - L1MC5 LINE L1 -60 7901 7746 974 173 0 138 chr12 134312639 134312899 -9473556 - MER58A DNA MER1_type 0 224 1 700 238 127 48 chr12 134312899 134313112 -9473343 - L1MC5 LINE L1 -215 7746 7470 1969 165 0 9 chr12 134313112 134313427 -9473028 - AluJb SINE Alu 0 312 1 700 238 127 48 chr12 134313427 134313522 -9472933 - L1MC5 LINE L1 -491 7470 7384 792 249 62 8 chr12 134313523 134313764 -9472691 - HAL1 LINE L1 -1785 722 469 354 300 82 29 chr12 134313886 134314056 -9472399 + L1ME4a LINE L1 5943 6121 0 1745 201 0 0 chr12 134314155 134314444 -9472011 + AluJo SINE Alu 1 289 -23 2928 168 32 2 chr12 134314998 134315558 -9470897 + L1MB5 LINE L1 5590 6166 -8 2161 131 0 0 chr12 134315572 134315862 -9470593 + AluSx SINE Alu 1 290 -22 827 171 0 0 chr12 134316556 134316696 -9469759 - MLT1B LTR MaLR -250 140 1 1207 182 14 5 chr12 134316907 134317127 -9469328 + MER58A DNA MER1_type 2 223 -1 684 210 0 0 chr12 134318354 134318511 -9467944 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 301 319 59 44 chr12 134318521 134318656 -9467799 - L2 LINE L2 -3 3269 3133 1120 203 98 3 chr12 134319113 134319409 -9467046 - MER33 DNA MER1_type 0 324 1 430 306 20 0 chr12 134319523 134319670 -9466785 - Charlie8 DNA MER1_type -2197 220 71 1942 141 3 46 chr12 134319680 134320006 -9466449 + AluJo SINE Alu 1 312 0 1947 130 0 44 chr12 134320769 134321084 -9465371 - AluJo SINE Alu 0 312 12 196 307 53 13 chr12 134321422 134321497 -9464958 + MIR SINE MIR 36 113 -95 1547 156 19 100 chr12 134324642 134324963 -9461492 + AluJo SINE Alu 1 295 -17 708 293 106 40 chr12 134326001 134326659 -9459796 - L1MC4a LINE L1 -1853 5955 5254 320 341 158 0 chr12 134326676 134326960 -9459495 - L1MC4a LINE L1 -913 5233 4905 484 169 0 0 chr12 134333157 134333234 -9453221 - Tigger5 DNA MER2_type -5 2318 2242 366 119 34 0 chr12 134333232 134333291 -9453164 + Tigger5 DNA MER2_type 2257 2317 -6 * 244 193 158 0 chr12 134333293 134333350 -9453105 - Tigger5 DNA MER2_type -2244 79 14 282 339 31 15 chr12 134333950 134334080 -9452375 - MIR3 SINE MIR -72 136 5 183 80 0 0 chr12 134334754 134334779 -9451676 + (TGGG)n Simple_repeat Simple_repeat 2 26 0 1410 223 38 35 chr12 134335409 134335750 -9450705 + LTR10C LTR ERV1 188 529 -62 193 271 17 0 chr12 134336048 134336107 -9450348 - L2 LINE L2 -16 3256 3197 253 173 38 135 chr12 134336176 134336309 -9450146 - L1ME4a LINE L1 0 6121 6002 201 133 0 0 chr12 134337460 134337490 -9448965 + L2 LINE L2 3206 3235 -37 355 301 30 15 chr12 134337525 134337658 -9448797 - MIR SINE MIR -116 146 12 467 330 11 0 chr12 134338687 134338878 -9447577 + L1ME LINE L1 5589 5781 -340 291 262 190 55 chr12 134339816 134340466 -9445989 + L2 LINE L2 2489 3233 -39 4806 123 46 96 chr12 134340565 134341608 -9444847 + pTR5 LTR ERV1 719 2025 -413 385 178 58 65 chr12 134341608 134341715 -9444740 + LTR30 LTR ERV1 375 640 -82 1584 106 5 0 chr12 134341715 134341933 -9444522 + pTR5 LTR ERV1 177 395 -2043 193 286 17 67 chr12 134344846 134344965 -9441490 + L2 LINE L2 2910 3022 -250 310 310 20 20 chr12 134345689 134345789 -9440666 - MIR3 SINE MIR 0 208 109 243 203 34 34 chr12 134345930 134345989 -9440466 + MIR SINE MIR 204 262 0 432 305 127 5 chr12 134346707 134346904 -9439551 + MIR SINE MIR 16 236 -26 2124 119 0 0 chr12 134347311 134347621 -9438834 + AluY SINE Alu 1 310 -1 1080 94 0 0 chr12 134347621 134347800 -9438655 + AluSq SINE Alu 134 312 0 596 164 0 69 chr12 134349464 134349580 -9436875 - FLAM_A SINE Alu -17 125 18 185 289 62 101 chr12 134351440 134351511 -9434944 - MIR SINE MIR 0 262 190 2003 113 33 10 chr12 134351511 134351813 -9434642 - AluSx SINE Alu -3 309 1 185 289 62 101 chr12 134351813 134351865 -9434590 - MIR SINE MIR -72 190 138 2144 89 3 0 chr12 134351865 134352167 -9434288 - AluSp SINE Alu 0 303 1 185 289 62 101 chr12 134352167 134352249 -9434206 - MIR SINE MIR -124 138 63 519 273 43 37 chr12 134352843 134353030 -9433425 + MIR SINE MIR 2 189 -73 430 158 40 0 chr12 134353044 134353120 -9433335 + MER3 DNA MER1_type 5 83 -126 1955 117 35 0 chr12 134353137 134353419 -9433036 - AluSx SINE Alu -20 292 1 198 257 149 0 chr12 134353442 134353516 -9432939 - MIR SINE MIR -71 191 107 490 197 107 0 chr12 134353542 134353664 -9432791 + MER3 DNA MER1_type 75 209 0 292 196 0 0 chr12 134353626 134353677 -9432778 - MER3 DNA MER1_type -124 85 35 * 483 274 102 6 chr12 134353833 134353990 -9432465 + L2 LINE L2 3095 3266 -47 213 369 90 33 chr12 134355012 134355134 -9431321 + L2 LINE L2 3138 3266 -6 619 267 184 5 chr12 134355543 134355760 -9430695 - MIR SINE MIR -6 256 1 847 219 33 0 chr12 134356806 134357016 -9429439 + MER20 DNA MER1_type 1 217 -2 332 313 30 53 chr12 134358245 134358376 -9428079 - L2 LINE L2 -1 3312 3185 2468 46 3 0 chr12 134363271 134363576 -9422879 - AluY SINE Alu -5 306 1 337 320 70 16 chr12 134364289 134364417 -9422038 + L2 LINE L2 3137 3271 -1 1385 227 85 30 chr12 134364936 134365395 -9421060 + L1ME2 LINE L1 5671 6154 -10 255 200 18 0 chr12 134365438 134365493 -9420962 + L1MC4 LINE L1 7832 7887 -155 596 174 0 51 chr12 134365986 134366342 -9420113 + CT-rich Low_complexity Low_complexity 1 338 0 375 316 139 41 chr12 134366345 134366792 -9419663 + L2 LINE L2 2722 3229 -84 779 131 7 0 chr12 134366841 134366978 -9419477 + (TGGA)n Simple_repeat Simple_repeat 1 138 0 2273 84 0 3 chr12 134367011 134367310 -9419145 + AluY SINE Alu 1 298 -13 568 258 8 0 chr12 134367634 134367758 -9418697 + MIR SINE MIR 29 153 -109 2478 65 0 0 chr12 134368003 134368313 -9418142 + AluY SINE Alu 1 310 -1 2392 57 0 10 chr12 134369536 134369835 -9416620 - AluY SINE Alu -15 296 1 571 140 0 0 chr12 134369934 134370027 -9416428 + FLAM_A SINE Alu 47 139 -3 200 200 18 0 chr12 134370153 134370208 -9416247 + (TA)n Simple_repeat Simple_repeat 2 57 0 180 0 0 0 chr12 134370423 134370443 -9416012 + (GAAA)n Simple_repeat Simple_repeat 3 22 0 381 291 140 17 chr12 134370916 134371095 -9415360 + MIR SINE MIR 36 236 -26 2079 120 3 0 chr12 134371502 134371811 -9414644 + AluY SINE Alu 1 310 -1 982 88 0 14 chr12 134371811 134371958 -9414497 + AluSq SINE Alu 134 278 -35 195 100 0 0 chr12 134371963 134371993 -9414462 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 596 164 0 69 chr12 134373658 134373774 -9412681 - FLAM_A SINE Alu -17 125 18 185 289 62 101 chr12 134375636 134375707 -9410748 - MIR SINE MIR 0 262 190 2003 113 33 10 chr12 134375707 134376009 -9410446 - AluSx SINE Alu -3 309 1 185 289 62 101 chr12 134376009 134376061 -9410394 - MIR SINE MIR -72 190 138 2144 89 3 0 chr12 134376061 134376363 -9410092 - AluSp SINE Alu 0 303 1 185 289 62 101 chr12 134376363 134376445 -9410010 - MIR SINE MIR -124 138 63 519 273 43 37 chr12 134377039 134377226 -9409229 + MIR SINE MIR 2 189 -73 430 158 40 0 chr12 134377240 134377316 -9409139 + MER3 DNA MER1_type 5 83 -126 1955 117 35 0 chr12 134377333 134377615 -9408840 - AluSx SINE Alu -20 292 1 198 257 149 0 chr12 134377638 134377712 -9408743 - MIR SINE MIR -71 191 107 490 197 107 0 chr12 134377738 134377860 -9408595 + MER3 DNA MER1_type 75 209 0 292 196 0 0 chr12 134377822 134377873 -9408582 - MER3 DNA MER1_type -124 85 35 * 483 274 102 6 chr12 134378029 134378186 -9408269 + L2 LINE L2 3095 3266 -47 213 369 90 33 chr12 134379208 134379330 -9407125 + L2 LINE L2 3138 3266 -6 613 259 190 5 chr12 134379739 134379955 -9406500 - MIR SINE MIR -6 256 1 825 219 33 0 chr12 134381001 134381211 -9405244 + MER20 DNA MER1_type 1 217 -2 285 313 30 53 chr12 134382446 134382577 -9403878 - L2 LINE L2 -1 3312 3185 2161 64 82 0 chr12 134387472 134387754 -9398701 - AluSc SINE Alu -4 305 1 289 247 13 0 chr12 134388420 134388497 -9397958 - L3 LINE CR1 -257 1320 1243 23 0 0 0 chr12 134390236 134390259 -9396196 + GC_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr12 134390445 134390490 -9395965 + GC_rich Low_complexity Low_complexity 1 45 0 34 93 0 0 chr12 134390593 134390690 -9395765 + GC_rich Low_complexity Low_complexity 1 97 0 24 91 0 0 chr12 134390768 134390834 -9395621 + GC_rich Low_complexity Low_complexity 1 66 0 214 94 0 57 chr12 134391108 134391161 -9395294 + (CGGGGG)n Simple_repeat Simple_repeat 4 53 0 210 216 34 45 chr12 134391602 134391690 -9394765 + (CGGGG)n Simple_repeat Simple_repeat 5 91 0 26 30 0 0 chr12 134392534 134392567 -9393888 + AT_rich Low_complexity Low_complexity 1 33 0 263 325 0 0 chr12 134393041 134393124 -9393331 + MIR SINE MIR 57 139 -123 1427 179 51 18 chr12 134393453 134393726 -9392729 - AluJo SINE Alu -30 282 1 552 281 73 46 chr12 134394283 134394693 -9391762 - L2 LINE L2 -221 3051 2632 2222 83 28 0 chr12 134394815 134395103 -9391352 + AluY SINE Alu 1 296 -15 258 274 29 10 chr12 134395736 134395838 -9390617 + L1ME4a LINE L1 4730 4833 -1313 265 298 40 20 chr12 134396240 134396391 -9390064 + L1ME4a LINE L1 5255 5408 -2400 730 280 89 53 chr12 134396433 134397186 -9389269 + L1ME LINE L1 4389 5168 -978 297 259 226 28 chr12 134397308 134397671 -9388784 + L1ME LINE L1 5376 5810 -311 1810 160 13 29 chr12 134397689 134397996 -9388459 - AluJb SINE Alu -10 302 1 258 285 196 31 chr12 134398412 134398703 -9387752 + L1ME4a LINE L1 5577 5915 -206 1851 136 144 29 chr12 134399375 134399757 -9386698 + MSTC LTR MaLR 2 427 -1 1935 151 28 0 chr12 134400973 134401264 -9385191 + AluJb SINE Alu 3 301 -11 245 312 26 0 chr12 134404089 134404166 -9382289 + ORSL DNA AcHobo 195 273 -2 518 272 124 5 chr12 134405527 134405729 -9380726 - MIR SINE MIR -14 248 23 1367 106 20 25 chr12 134408160 134408405 -9378050 + L1MB2 LINE L1 5926 6169 -2 237 296 68 23 chr12 134409079 134409211 -9377244 - MIR SINE MIR -119 143 6 2701 156 77 28 chr12 134412334 134412943 -9373512 - Charlie1 DNA MER1_type -4 2757 2119 415 238 20 0 chr12 134413478 134413579 -9372876 - MER5A DNA MER1_type -83 106 4 274 257 0 14 chr12 134413704 134413774 -9372681 - LTR67 LTR ERVL -2 555 487 304 278 150 15 chr12 134414266 134414399 -9372056 - MIR SINE MIR -59 203 53 2229 166 57 18 chr12 134415418 134415858 -9370597 - MLT1C LTR MaLR -5 462 6 273 363 62 34 chr12 134416594 134416914 -9369541 + L2 LINE L2 2927 3255 -17 218 277 102 29 chr12 134417776 134417913 -9368542 - L2 LINE L2 -1768 1546 1400 382 224 40 20 chr12 134418259 134418411 -9368044 + L2 LINE L2 1246 1400 -1914 770 200 110 55 chr12 134418611 134418901 -9367554 - L1ME3A LINE L1 -5 6165 5860 630 338 69 19 chr12 134418909 134419270 -9367185 + L2 LINE L2 2134 2512 -802 245 283 125 8 chr12 134419842 134419962 -9366493 + L2 LINE L2 3178 3311 -2 835 282 178 23 chr12 134420299 134421087 -9365368 - L2 LINE L2 -351 2963 2054 567 313 132 29 chr12 134421243 134421498 -9364957 - L2 LINE L2 -1614 1700 1473 2396 94 0 0 chr12 134421498 134421795 -9364660 - AluSg SINE Alu -13 297 1 567 313 132 29 chr12 134421795 134422101 -9364354 - L2 LINE L2 -1841 1473 1081 3780 105 4 17 chr12 134422678 134423212 -9363243 + MER1A DNA MER1_type 1 527 0 228 253 48 36 chr12 134423230 134423313 -9363142 - L1MC5 LINE L1 -27 7934 7851 414 0 0 0 chr12 134423583 134423629 -9362826 + (TG)n Simple_repeat Simple_repeat 1 46 0 488 262 106 113 chr12 134425902 134427283 -9359172 - L1MC3 LINE L1 -96 7946 6432 944 264 104 19 chr12 134427529 134427590 -9358865 - L1MC4a LINE L1 -1778 6030 5976 1786 176 16 0 chr12 134427590 134427772 -9358683 - AluJo SINE Alu 0 312 121 207 0 0 0 chr12 134427772 134427795 -9358660 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1786 176 16 0 chr12 134427795 134427919 -9358536 - AluJo SINE Alu -191 121 1 944 264 104 19 chr12 134427919 134428270 -9358185 - L1MC4a LINE L1 -1832 5976 5583 424 263 255 29 chr12 134428724 134429100 -9357355 - L2 LINE L2 -9 3304 2844 1140 191 173 30 chr12 134432062 134432466 -9353989 - L2 LINE L2 -1 3312 2851 332 257 171 21 chr12 134432962 134433102 -9353353 + MIR3 SINE MIR 47 207 -1 470 316 52 0 chr12 134433211 134433366 -9353089 + MIR3 SINE MIR 40 202 -6 491 258 23 23 chr12 134433626 134433758 -9352697 + MER94 DNA DNA 2 133 -1 232 271 213 16 chr12 134433772 134433960 -9352495 - MER102a DNA MER1_type -30 300 76 225 277 69 40 chr12 134434288 134434389 -9352066 - L2 LINE L2 -818 2496 2393 193 284 213 16 chr12 134434358 134434541 -9351914 + L3 LINE CR1 1350 1568 -9 * 319 281 97 18 chr12 134434803 134434917 -9351538 + MIR SINE MIR 100 222 -40 207 0 0 0 chr12 134436664 134436687 -9349768 + (T)n Simple_repeat Simple_repeat 1 23 0 350 304 84 39 chr12 134436943 134437202 -9349253 + L1MEc LINE L1 2179 2416 -3799 260 339 23 15 chr12 134437443 134437573 -9348882 + L1MEc LINE L1 2772 2902 -3313 418 326 99 48 chr12 134438246 134438639 -9347816 - L1M4 LINE L1 -2660 3486 3074 1258 233 66 3 chr12 134438690 134439008 -9347447 + MER58B DNA MER1_type 4 341 0 2246 87 0 0 chr12 134439658 134439958 -9346497 - AluY SINE Alu -11 300 1 321 265 92 97 chr12 134440451 134440636 -9345819 - L1M4 LINE L1 -1088 5058 4875 1926 92 99 0 chr12 134440712 134440995 -9345460 - AluY SINE Alu 0 311 1 2144 96 0 17 chr12 134441231 134441532 -9344923 - AluSq SINE Alu -17 296 1 1565 161 3 45 chr12 134442021 134442313 -9344142 - AluJo SINE Alu -32 280 1 359 200 31 3 chr12 134442743 134442872 -9343583 - MER53 DNA DNA 0 189 1 336 173 80 0 chr12 134443743 134443818 -9342637 - L1MA9 LINE L1 -25 6287 6207 227 300 131 52 chr12 134444176 134444354 -9342101 - L2 LINE L2 -649 2665 2502 1672 212 140 5 chr12 134444354 134444797 -9341658 - MLT1D LTR MaLR -2 503 1 227 300 131 52 chr12 134444797 134445001 -9341454 - L2 LINE L2 -812 2502 2253 1991 190 19 0 chr12 134445049 134445413 -9341042 - MLT2D LTR ERVL -43 371 1 361 289 127 18 chr12 134445416 134445644 -9340811 + L2 LINE L2 2396 2648 -666 384 144 34 41 chr12 134445687 134445833 -9340622 + (TCTCTG)n Simple_repeat Simple_repeat 3 147 0 796 235 32 32 chr12 134446154 134446371 -9340084 + MIR SINE MIR 46 262 0 1782 152 14 7 chr12 134447062 134447358 -9339097 - AluSx SINE Alu -14 298 1 22 56 0 0 chr12 134447407 134447443 -9339012 + AT_rich Low_complexity Low_complexity 1 36 0 1018 259 142 68 chr12 134447541 134447616 -9338839 - MER115 DNA AcHobo -2 691 623 1884 127 11 0 chr12 134447616 134447892 -9338563 + AluJo SINE Alu 4 282 -30 1018 259 142 68 chr12 134447892 134448452 -9338003 - MER115 DNA AcHobo -70 623 9 3125 84 20 5 chr12 134449438 134449876 -9336579 - L1PA10 LINE L1 -9 6159 5715 2279 58 17 0 chr12 134449877 134450170 -9336285 - AluY SINE Alu -13 298 1 1800 158 0 3 chr12 134450852 134451143 -9335312 - AluJo SINE Alu -22 290 1 249 355 132 16 chr12 134452104 134452225 -9334230 - L2 LINE L2 -200 3072 2938 1006 198 5 21 chr12 134452225 134452412 -9334043 - MER5A DNA MER1_type 0 189 6 350 267 20 10 chr12 134452636 134452737 -9333718 - MIR SINE MIR -115 147 46 454 249 74 26 chr12 134453480 134453669 -9332786 - L1MC5 LINE L1 -155 7806 7609 255 200 18 0 chr12 134453915 134453970 -9332485 - L1MC4 LINE L1 -155 7887 7832 1385 227 85 30 chr12 134454013 134454472 -9331983 - L1ME2 LINE L1 -10 6154 5671 351 326 62 16 chr12 134454996 134455125 -9331330 - L2 LINE L2 -1 3271 3137 689 177 126 0 chr12 134455819 134455837 -9330618 - MER31B LTR ERV1 -1 465 451 2469 27 14 0 chr12 134455837 134456131 -9330324 + AluY SINE Alu 1 298 -13 689 177 126 0 chr12 134456131 134456287 -9330168 - MER31B LTR ERV1 -15 451 269 412 213 50 0 chr12 134456283 134456363 -9330092 - MER31B LTR ERV1 -382 84 1 * 36 23 0 0 chr12 134456903 134456946 -9329509 + AT_rich Low_complexity Low_complexity 1 43 0 199 242 32 32 chr12 134457034 134457096 -9329359 + MIR SINE MIR 111 172 -90 2168 114 0 0 chr12 134457956 134458253 -9328202 - AluSx SINE Alu -15 297 1 393 232 134 9 chr12 134459168 134459280 -9327175 - LTR67 LTR ERVL 0 557 432 2101 112 0 7 chr12 134459291 134459595 -9326860 - AluSx SINE Alu -10 302 1 1309 241 66 15 chr12 134459863 134460258 -9326197 - MLT1C LTR MaLR 0 467 53 2145 117 0 0 chr12 134461248 134461555 -9324900 + AluSx SINE Alu 1 307 -5 2410 84 0 0 chr12 134462603 134462914 -9323541 + AluSx SINE Alu 1 311 -1 339 44 0 0 chr12 134463108 134463153 -9323302 + (CA)n Simple_repeat Simple_repeat 2 46 0 257 297 75 39 chr12 134463292 134463546 -9322909 + LTR16B LTR ERVL 131 463 -1 637 239 180 14 chr12 134464513 134464735 -9321720 + MLT1L LTR MaLR 18 276 -339 469 150 0 25 chr12 134464808 134464888 -9321567 + MER116 DNA Mariner 2 79 -1 819 246 82 62 chr12 134464915 134465366 -9321089 + HAL1b LINE L1 75 534 -814 3740 109 19 10 chr12 134465383 134465905 -9320550 + MER1A DNA MER1_type 1 527 0 225 241 37 0 chr12 134465905 134465959 -9320496 - L2 LINE L2 -602 2712 2657 744 240 183 29 chr12 134465969 134466369 -9320086 + L2 LINE L2 2745 3201 -112 1074 141 0 0 chr12 134466517 134466680 -9319775 + FRAM SINE Alu 1 162 -14 469 235 22 22 chr12 134466689 134466825 -9319630 + HAL1b LINE L1 446 581 -767 582 213 25 125 chr12 134466852 134467205 -9319250 + HAL1b LINE L1 1031 1348 0 226 230 15 118 chr12 134467360 134467495 -9318960 + L2 LINE L2 2899 3019 -253 661 132 0 0 chr12 134467529 134467620 -9318835 - FLAM_C SINE Alu -19 124 34 188 250 238 12 chr12 134467688 134467772 -9318683 + L2 LINE L2 3192 3294 -19 2145 110 3 0 chr12 134468432 134468731 -9317724 - AluSc SINE Alu -2 307 8 875 161 0 0 chr12 134469040 134469183 -9317272 + AluJb SINE Alu 1 143 -169 916 127 89 94 chr12 134469199 134469412 -9317043 + AluJo SINE Alu 85 296 -16 2199 98 7 3 chr12 134469488 134469795 -9316660 - AluSx SINE Alu -4 308 1 412 223 19 29 chr12 134469797 134469900 -9316555 + MER5B DNA MER1_type 76 177 -1 412 330 50 11 chr12 134469937 134470200 -9316255 - L1ME LINE L1 -577 5544 5263 1927 120 0 41 chr12 134470270 134470444 -9316011 - AluJb SINE Alu -8 304 124 351 0 0 0 chr12 134470444 134470483 -9315972 + (TA)n Simple_repeat Simple_repeat 1 39 0 2304 73 0 3 chr12 134470483 134470785 -9315670 - AluY SINE Alu -10 301 1 1927 120 0 41 chr12 134470785 134470926 -9315529 - AluJb SINE Alu -186 126 1 370 350 55 33 chr12 134471062 134471245 -9315210 - L1ME LINE L1 -1080 5066 4880 317 330 69 27 chr12 134471401 134471589 -9314866 - MLT1K LTR MaLR -11 577 382 271 226 32 0 chr12 134471896 134471958 -9314497 - L1ME LINE L1 -1363 4783 4720 321 321 33 38 chr12 134471981 134472037 -9314418 - L1ME LINE L1 -1480 4666 4611 2165 80 0 11 chr12 134472037 134472355 -9314100 + AluSq SINE Alu 1 315 0 321 321 33 38 chr12 134472355 134472721 -9313734 - L1ME LINE L1 -1535 4611 4245 332 263 91 46 chr12 134473321 134473496 -9312959 - L1ME4a LINE L1 -62 6059 5877 881 206 98 51 chr12 134473512 134473633 -9312822 - L1MD3 LINE L1 -25 7970 7856 2218 82 3 0 chr12 134473633 134473924 -9312531 - AluSp SINE Alu -21 292 1 881 206 98 51 chr12 134473924 134474078 -9312377 - L1MD3 LINE L1 -139 7856 7682 346 146 0 0 chr12 134474086 134474141 -9312314 - AluSp/q SINE Alu -7 296 242 857 118 0 0 chr12 134474141 134474260 -9312195 - AluSq/x SINE Alu -194 119 1 1036 188 58 5 chr12 134474262 134474470 -9311985 - L1MD3 LINE L1 -315 7680 7462 227 258 45 0 chr12 134474534 134474600 -9311855 - L1ME4a LINE L1 -1986 5822 5754 1020 142 0 34 chr12 134475062 134475238 -9311217 + AluSg/x SINE Alu 140 309 -3 272 120 20 0 chr12 134475241 134475291 -9311164 + A-rich Low_complexity Low_complexity 3 53 0 2424 98 3 0 chr12 134476247 134476562 -9309893 - AluSx SINE Alu 0 320 5 909 264 0 0 chr12 134476573 134476781 -9309674 - MER58A DNA MER1_type -14 210 3 2201 116 0 22 chr12 134477036 134477347 -9309108 - AluSq SINE Alu -9 304 1 827 167 94 17 chr12 134477573 134477753 -9308702 + MER58B DNA MER1_type 3 196 -145 2380 53 0 41 chr12 134477882 134478202 -9308253 - AluY SINE Alu -4 307 1 2230 112 7 0 chr12 134478204 134478500 -9307955 - AluSx SINE Alu -14 298 1 194 284 45 30 chr12 134478514 134478581 -9307874 + L2 LINE L2 3205 3272 0 817 223 80 13 chr12 134478676 134478900 -9307555 + MIR SINE MIR 2 240 -22 877 217 81 38 chr12 134478900 134479278 -9307177 + MLT1C LTR MaLR 3 389 -1 508 226 95 12 chr12 134479544 134479712 -9306743 + LTR16C LTR ERVL 303 484 -7 273 293 31 93 chr12 134479958 134480217 -9306238 - HAL1 LINE L1 -8 2499 2257 1516 231 85 30 chr12 134480219 134480725 -9305730 + MLT1E3 LTR MaLR 2 535 -89 1830 160 24 7 chr12 134480728 134481022 -9305433 - AluJo SINE Alu -13 299 1 592 214 53 0 chr12 134481239 134481370 -9305085 - MER58B DNA MER1_type -37 304 167 257 302 16 24 chr12 134482646 134482772 -9303683 + CT-rich Low_complexity Low_complexity 2 126 0 183 42 0 0 chr12 134482792 134482816 -9303639 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2280 125 0 0 chr12 134482847 134483151 -9303304 - AluSq SINE Alu -9 304 1 380 261 14 36 chr12 134483155 134483293 -9303162 - L1MD2 LINE L1 -29 6330 6196 204 268 89 0 chr12 134485176 134485232 -9301223 + MIR SINE MIR 84 144 -118 388 217 0 0 chr12 134485233 134485316 -9301139 + MLT1D LTR MaLR 1 83 -422 474 128 64 133 chr12 134485332 134485520 -9300935 + Charlie5 DNA MER1_type 2369 2543 -69 1585 185 61 24 chr12 134485536 134485914 -9300541 + MLT1D LTR MaLR 114 505 0 337 253 12 0 chr12 134485918 134486001 -9300454 + MIR SINE MIR 144 227 -35 2193 111 0 0 chr12 134486004 134486320 -9300135 + AluY SINE Alu 2 317 0 1107 134 9 3 chr12 134486353 134486695 -9299760 + (ATG)n Simple_repeat Simple_repeat 1 344 0 1001 99 25 17 chr12 134486493 134487324 -9299131 + (ATGGTG)n Simple_repeat Simple_repeat 2 1014 0 1039 100 17 17 chr12 134487327 134487346 -9299109 + (ATGGTG)n Simple_repeat Simple_repeat 1 199 0 1039 100 17 17 chr12 134487346 134487526 -9298929 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 326 232 46 86 chr12 134487798 134487853 -9298602 + MIR3 SINE MIR 2 58 -150 1348 203 21 31 chr12 134487853 134488178 -9298277 + MER33 DNA MER1_type 2 323 -1 326 232 46 86 chr12 134488178 134488273 -9298182 + MIR3 SINE MIR 58 146 -62 325 303 74 29 chr12 134489104 134489207 -9297248 + MIR SINE MIR 36 152 -110 1614 158 117 42 chr12 134489207 134489380 -9297075 + MLT1B LTR MaLR 1 160 -230 2333 100 0 0 chr12 134489380 134489681 -9296774 + AluSg SINE Alu 1 301 -9 1614 158 117 42 chr12 134489681 134489867 -9296588 + MLT1B LTR MaLR 160 387 -3 325 303 74 29 chr12 134489867 134489938 -9296517 + MIR SINE MIR 152 218 -44 1822 168 10 13 chr12 134491025 134491329 -9295126 - AluJo SINE Alu -9 303 1 2558 34 3 3 chr12 134493959 134494255 -9292200 - AluY SINE Alu -15 296 1 736 87 0 43 chr12 134494255 134494370 -9292085 - FRAM SINE Alu 0 176 67 3574 119 5 4 chr12 134494370 134494936 -9291519 - LTR17 LTR ERV1 0 780 170 222 37 0 0 chr12 134494999 134495026 -9291429 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5928 50 14 9 chr12 134495026 134495767 -9290688 - SVA Other Other -18 1368 625 2242 112 0 0 chr12 134495937 134496224 -9290231 - AluSx SINE Alu -25 287 1 2782 32 0 0 chr12 134497170 134497479 -9288976 - AluY SINE Alu 0 311 3 1868 120 30 40 chr12 134497889 134498190 -9288265 + AluJb SINE Alu 1 298 -14 222 266 122 86 chr12 134498957 134499096 -9287359 - L2 LINE L2 -8 3305 3162 2509 84 6 0 chr12 134499373 134499684 -9286771 + AluSp SINE Alu 1 313 0 335 326 0 11 chr12 134500073 134500168 -9286287 + L2 LINE L2 3174 3267 -5 333 0 0 0 chr12 134500457 134500494 -9285961 + (GA)n Simple_repeat Simple_repeat 2 38 0 395 228 65 49 chr12 134500539 134500662 -9285793 - MLT1K LTR MaLR -36 552 428 225 194 0 0 chr12 134500681 134500717 -9285738 + MLT1H LTR MaLR 167 202 -347 2159 101 57 3 chr12 134500717 134501014 -9285441 - AluSq SINE Alu 0 313 1 456 259 9 0 chr12 134501206 134501314 -9285141 - MER81 DNA DNA -5 109 1 274 239 54 62 chr12 134501314 134501444 -9285011 + MLT1H LTR MaLR 421 549 0 203 289 66 40 chr12 134501546 134501622 -9284833 - L3b LINE CR1 -6 1577 1500 2347 112 3 0 chr12 134501712 134502017 -9284438 + AluSp SINE Alu 1 306 -7 195 280 189 8 chr12 134502146 134502278 -9284177 + L2 LINE L2 3081 3236 -77 1844 176 17 61 chr12 134502280 134502688 -9283767 - MLT1B LTR MaLR 0 390 1 219 69 0 0 chr12 134502706 134502735 -9283720 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2291 122 0 0 chr12 134503434 134503746 -9282709 - AluSq SINE Alu -1 312 1 739 255 42 0 chr12 134503746 134503962 -9282493 - L1MD3 LINE L1 -17 7978 7754 6241 52 48 40 chr12 134504080 134504976 -9281479 - SVA Other Other -51 1335 433 5958 68 25 55 chr12 134504993 134505874 -9280581 - SVA Other Other -520 866 12 312 98 0 20 chr12 134505874 134505925 -9280530 - LTR17 LTR ERV1 -596 184 135 1018 258 59 20 chr12 134505968 134506324 -9280131 - L1ME2 LINE L1 -14 6150 5781 1975 141 0 0 chr12 134506452 134506743 -9279712 - AluSx SINE Alu -21 291 1 482 270 78 74 chr12 134506872 134507216 -9279239 - L1ME2 LINE L1 -469 5652 5290 2230 82 61 0 chr12 134507223 134507517 -9278938 - AluSx SINE Alu 0 312 1 390 99 0 49 chr12 134507518 134507599 -9278856 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 4366 75 17 0 chr12 134507599 134508188 -9278267 - L1PA13 LINE L1 0 6163 5565 673 265 0 0 chr12 134508197 134508367 -9278088 - MLT1I LTR MaLR 0 409 240 2148 137 3 3 chr12 134508402 134508702 -9277753 + AluSx SINE Alu 1 300 -12 249 272 78 39 chr12 134509008 134509214 -9277241 + L1ME LINE L1 4619 4832 -1314 2300 113 0 0 chr12 134509248 134509541 -9276914 + AluSx SINE Alu 1 293 -19 499 259 81 106 chr12 134509973 134510445 -9276010 + L1ME LINE L1 5295 5754 -367 1187 173 44 37 chr12 134511576 134511847 -9274608 + ORSL DNA AcHobo 3 275 0 2234 109 0 7 chr12 134512325 134512628 -9273827 + AluSx SINE Alu 1 301 -11 799 293 26 13 chr12 134513869 134514101 -9272354 - MIR SINE MIR -26 236 2 217 213 16 16 chr12 134514228 134514289 -9272166 + (TA)n Simple_repeat Simple_repeat 2 62 0 287 278 112 4 chr12 134514307 134514548 -9271907 - L1ME4a LINE L1 -209 5912 5646 1091 196 105 57 chr12 134514548 134514888 -9271567 - MLT1E1 LTR MaLR 0 654 185 2044 111 50 0 chr12 134514888 134515167 -9271288 - AluSq SINE Alu -19 294 2 1091 196 105 57 chr12 134515167 134515185 -9271270 - MLT1E1 LTR MaLR -469 185 169 590 241 24 44 chr12 134515201 134515430 -9271025 - L1ME4a LINE L1 -473 5648 5420 607 167 0 0 chr12 134515559 134515667 -9270788 + L1MC/D LINE L1 4502 4609 -1537 2417 98 0 0 chr12 134515672 134515969 -9270486 + AluSg SINE Alu 1 297 -13 2180 218 27 4 chr12 134515982 134516824 -9269631 + L1MC/D LINE L1 4724 5589 -653 2201 107 3 19 chr12 134516869 134517178 -9269277 + AluSp SINE Alu 1 304 -9 368 248 144 16 chr12 134517181 134517306 -9269149 + MIR SINE MIR 49 189 -73 418 224 66 2 chr12 134517306 134517487 -9268968 + MER58A DNA MER1_type 1 224 0 237 340 6 38 chr12 134517679 134517838 -9268617 + G-rich Low_complexity Low_complexity 4 157 0 * 264 281 3 55 chr12 134517806 134518034 -9268421 + GA-rich Low_complexity Low_complexity 1 216 0 306 319 0 0 chr12 134518063 134518204 -9268251 + A-rich Low_complexity Low_complexity 1 141 0 22 186 0 0 chr12 134518248 134518307 -9268148 + GC_rich Low_complexity Low_complexity 1 59 0 5991 66 19 62 chr12 134518324 134519229 -9267226 - SVA Other Other -520 866 1 323 96 0 19 chr12 134519229 134519281 -9267174 - LTR17 LTR ERV1 -595 185 135 1034 256 59 20 chr12 134519324 134519680 -9266775 - L1ME2 LINE L1 -14 6150 5781 1963 144 0 0 chr12 134519808 134520099 -9266356 - AluSx SINE Alu -21 291 1 482 270 78 74 chr12 134520228 134520572 -9265883 - L1ME2 LINE L1 -469 5652 5290 2165 92 62 0 chr12 134520573 134520865 -9265590 - AluSg SINE Alu 0 310 1 282 233 82 46 chr12 134521120 134521297 -9265158 - L1P LINE L1 -1111 5035 4850 2036 89 7 34 chr12 134521339 134521631 -9264824 - AluSx SINE Alu -14 298 15 251 175 0 0 chr12 134521631 134521671 -9264784 - AluSx SINE Alu -260 40 1 5009 81 102 10 chr12 134521926 134522640 -9263815 - LTR17 LTR ERV1 0 780 1 2077 146 91 12 chr12 134523316 134523733 -9262722 - LTR7 LTR ERV1 0 450 1 1929 147 75 0 chr12 134523941 134524261 -9262194 - MER2 DNA MER2_type 0 344 1 3791 188 17 71 chr12 134524271 134524309 -9262146 + MER63C DNA MER1_type 1 40 -1020 303 122 0 0 chr12 134524309 134524358 -9262097 + (GA)n Simple_repeat Simple_repeat 2 50 0 3791 188 17 71 chr12 134524358 134525268 -9261187 + MER63C DNA MER1_type 40 905 -25 508 330 88 5 chr12 134525401 134525595 -9260860 - MIR SINE MIR -6 256 47 2353 55 17 0 chr12 134525636 134525929 -9260526 - AluY SINE Alu -13 298 1 204 380 13 0 chr12 134525944 134526023 -9260432 + L3 LINE CR1 1039 1118 -459 466 286 66 66 chr12 134526091 134526350 -9260105 + MLT1J LTR MaLR 102 360 -151 399 278 241 12 chr12 134526748 134526989 -9259466 + L3 LINE CR1 1281 1576 -1 1918 99 6 58 chr12 134527718 134528030 -9258425 - AluSx SINE Alu -16 296 1 351 338 139 38 chr12 134528141 134528481 -9257974 + L2 LINE L2 2733 3149 -164 875 193 48 70 chr12 134528481 134528544 -9257911 + MER58A DNA MER1_type 2 65 -2355 2257 99 0 0 chr12 134528544 134528848 -9257607 - AluSc SINE Alu -4 305 2 875 193 48 70 chr12 134528848 134529012 -9257443 + MER58A DNA MER1_type 65 224 0 351 338 139 38 chr12 134529012 134529195 -9257260 + L2 LINE L2 3149 3312 -1 2219 112 0 6 chr12 134529229 134529543 -9256912 + AluSx SINE Alu 1 312 0 2148 253 17 21 chr12 134529610 134530085 -9256370 + MLT1H1 LTR MaLR 12 480 -69 2156 81 3 0 chr12 134530085 134530388 -9256067 - AluY SINE Alu 0 304 1 2148 253 17 21 chr12 134530388 134530453 -9256002 + MLT1H1 LTR MaLR 480 544 -5 2240 93 0 0 chr12 134532789 134533089 -9253366 - AluSq SINE Alu -13 300 1 276 280 8 34 chr12 134533148 134533266 -9253189 + MER115 DNA AcHobo 1 115 -578 479 234 71 39 chr12 134533296 134533450 -9253005 + MER96 DNA MER1_type? 16 174 -1 251 180 40 20 chr12 134533450 134533498 -9252957 + MER115 DNA AcHobo 161 209 -484 265 281 45 11 chr12 134533529 134533618 -9252837 + MER115 DNA AcHobo 316 407 -286 1906 129 17 0 chr12 134533709 134533996 -9252459 - AluSx SINE Alu -20 292 1 462 18 0 0 chr12 134534537 134534592 -9251863 + (TG)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr12 134534666 134534698 -9251757 + AT_rich Low_complexity Low_complexity 1 32 0 2267 103 0 0 chr12 134534760 134535070 -9251385 - AluSx SINE Alu -2 310 1 600 243 35 65 chr12 134535145 134535314 -9251141 - L1MA10 LINE L1 0 6324 6149 378 61 0 0 chr12 134535320 134535369 -9251086 + (TG)n Simple_repeat Simple_repeat 1 49 0 317 182 45 0 chr12 134535374 134535440 -9251015 - L1MA9 LINE L1 -53 6259 6191 197 240 202 19 chr12 134535440 134535544 -9250911 - MIR3 SINE MIR -22 186 64 457 268 148 80 chr12 134535679 134535972 -9250483 - MLT1K LTR MaLR -3 585 260 2204 93 0 7 chr12 134535972 134536282 -9250173 + AluSx SINE Alu 1 308 -4 457 268 148 80 chr12 134536282 134536361 -9250094 - MLT1K LTR MaLR -328 260 188 229 234 0 0 chr12 134536846 134536893 -9249562 + A-rich Low_complexity Low_complexity 1 47 0 2030 114 0 0 chr12 134537373 134537653 -9248802 - AluSx SINE Alu -32 280 1 508 239 58 7 chr12 134537936 134538074 -9248381 + LTR16C LTR ERVL 121 265 -226 1857 246 100 11 chr12 134538074 134538090 -9248365 - L1MD3 LINE L1 0 7995 7982 2095 108 0 3 chr12 134538090 134538425 -9248030 - AluSx SINE Alu 0 334 1 1857 246 100 11 chr12 134538425 134539135 -9247320 - L1MD3 LINE L1 -13 7982 7128 28 86 0 0 chr12 134539140 134539210 -9247245 + AT_rich Low_complexity Low_complexity 1 70 0 573 292 54 25 chr12 134539234 134539474 -9246981 + LTR16C LTR ERVL 245 491 0 927 243 57 53 chr12 134540420 134540721 -9245734 - MER46C DNA MER2_type 0 338 37 2178 97 13 3 chr12 134540739 134541049 -9245406 - AluSq SINE Alu 0 313 1 1339 198 78 97 chr12 134541877 134542247 -9244208 - MLT1D LTR MaLR 0 505 146 1803 154 0 0 chr12 134542247 134542533 -9243922 - AluJb SINE Alu -26 286 1 1339 198 78 97 chr12 134542533 134542677 -9243778 - MLT1D LTR MaLR -359 146 1 503 192 44 110 chr12 134542839 134542908 -9243547 - MIR SINE MIR -89 173 101 637 211 93 26 chr12 134542908 134543102 -9243353 - MER3 DNA MER1_type -2 207 1 503 192 44 110 chr12 134543102 134543214 -9243241 - MIR SINE MIR -161 101 4 287 283 367 0 chr12 134543734 134543911 -9242544 - MIR SINE MIR -3 259 18 2032 113 0 17 chr12 134544181 134544483 -9241972 + AluJb SINE Alu 1 297 -15 409 100 0 17 chr12 134544503 134544563 -9241892 + Alu SINE Alu 238 296 -16 2173 90 3 0 chr12 134545124 134545424 -9241031 - AluSp SINE Alu -12 301 1 1620 177 3 17 chr12 134545508 134545807 -9240648 - AluJb SINE Alu -17 295 1 479 184 0 0 chr12 134545937 134546024 -9240431 + MER53 DNA DNA 9 95 -94 291 179 15 0 chr12 134546026 134546093 -9240362 - MER53 DNA DNA -55 134 67 1300 150 87 38 chr12 134546238 134546359 -9240096 - AluJo SINE Alu -11 301 187 2137 103 3 0 chr12 134546359 134546659 -9239796 - AluSx SINE Alu -6 306 6 1300 150 87 38 chr12 134546659 134546824 -9239631 - AluJo SINE Alu -125 187 1 292 208 10 79 chr12 134547586 134547632 -9238823 + MER112 DNA MER1_type 78 115 -145 3095 155 49 78 chr12 134547632 134548341 -9238114 + LTR8 LTR ERV1 1 689 -2 292 208 10 79 chr12 134548341 134548395 -9238060 + MER112 DNA MER1_type 115 171 -89 2228 104 7 0 chr12 134548444 134548752 -9237703 + AluSx SINE Alu 1 310 -2 254 248 227 14 chr12 134548840 134548981 -9237474 - MER5A DNA MER1_type -2 187 17 274 333 12 0 chr12 134549419 134549503 -9236952 - L2 LINE L2 0 3272 3188 2515 52 0 0 chr12 134549542 134549848 -9236607 + AluY SINE Alu 1 306 -5 2063 131 0 3 chr12 134549972 134550284 -9236171 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr12 134550440 134550463 -9235992 + AT_rich Low_complexity Low_complexity 1 23 0 1357 201 11 4 chr12 134550466 134550745 -9235710 - AluJo SINE Alu -31 281 1 378 279 20 96 chr12 134550748 134551142 -9235313 - L1ME4a LINE L1 -142 5979 5616 567 215 32 81 chr12 134551142 134551222 -9235233 + MER5B DNA MER1_type 1 83 -95 2208 95 7 3 chr12 134551222 134551527 -9234928 - AluSx SINE Alu -6 306 1 567 215 32 81 chr12 134551527 134551632 -9234823 + MER5B DNA MER1_type 83 177 -1 405 333 40 9 chr12 134551670 134551892 -9234563 - L1ME4a LINE L1 -2265 5543 5315 1949 124 14 19 chr12 134552586 134552933 -9233522 - MER4A LTR ERV1 0 664 261 612 74 53 21 chr12 134552933 134553028 -9233427 - MER4A LTR ERV1 -566 98 1 2325 114 15 0 chr12 134553071 134553412 -9233043 - L1MB5 LINE L1 0 6174 5829 446 50 33 0 chr12 134553412 134553472 -9232983 + MER61E LTR ERV1 2 63 -506 267 211 0 0 chr12 134553585 134553637 -9232818 - AluSp/q SINE Alu -10 293 242 828 126 0 0 chr12 134553637 134553756 -9232699 - AluSq/x SINE Alu -193 119 1 903 182 111 5 chr12 134553758 134553956 -9232499 - L1MD3 LINE L1 -315 7680 7462 238 242 45 0 chr12 134554020 134554086 -9232369 - L1MB5 LINE L1 -1986 5822 5754 1103 108 0 36 chr12 134554548 134554714 -9231741 + AluSg/x SINE Alu 140 299 -13 2297 217 27 4 chr12 134554727 134555569 -9230886 + L1MC/D LINE L1 4724 5589 -653 2086 105 3 19 chr12 134555614 134555927 -9230528 + AluSp SINE Alu 1 308 -5 370 248 144 16 chr12 134555930 134556055 -9230400 + MIR SINE MIR 49 189 -73 450 224 66 2 chr12 134556055 134556236 -9230219 + MER58A DNA MER1_type 1 224 0 2125 119 0 0 chr12 134556380 134556682 -9229773 - AluSg SINE Alu -8 302 1 313 204 80 169 chr12 134556801 134556817 -9229638 - L1MC4 LINE L1 0 8042 8026 2113 74 40 10 chr12 134556817 134557113 -9229342 - AluY SINE Alu -6 305 1 313 204 80 169 chr12 134557113 134557321 -9229134 - L1MC4 LINE L1 -16 8026 7838 5313 68 24 1 chr12 134557337 134558004 -9228451 - LTR8 LTR ERV1 -8 683 2 283 248 140 33 chr12 134558041 134558255 -9228200 - L1MC5 LINE L1 -273 7688 7452 2242 100 0 10 chr12 134558786 134559097 -9227358 - AluSc SINE Alu -1 308 1 2169 104 3 0 chr12 134559698 134560005 -9226450 - AluSx SINE Alu -4 308 1 3956 122 29 22 chr12 134560379 134561010 -9225445 - MER41B LTR ERV1 0 635 1 882 185 22 11 chr12 134561027 134561205 -9225250 - LTR32 LTR ERVL -43 428 249 308 250 35 86 chr12 134561210 134561326 -9225129 + L1ME4a LINE L1 5319 5428 -2380 283 246 36 0 chr12 134561412 134561522 -9224933 + (TA)n Simple_repeat Simple_repeat 2 115 0 304 224 105 0 chr12 134561587 134561663 -9224792 - MIR SINE MIR -10 252 169 2226 213 49 70 chr12 134561664 134562066 -9224389 - LTR9 LTR ERV1 -11 601 215 1429 162 109 67 chr12 134562066 134562498 -9223957 + LTR7 LTR ERV1 1 450 0 2226 213 49 70 chr12 134562498 134562709 -9223746 - LTR9 LTR ERV1 -397 215 1 252 232 0 0 chr12 134562714 134562770 -9223685 - MIR SINE MIR -106 156 101 2080 193 81 21 chr12 134562770 134563200 -9223255 - LTR32 LTR ERVL -1 470 15 309 230 122 0 chr12 134563200 134563274 -9223181 - MIR SINE MIR -159 103 21 311 275 92 18 chr12 134563283 134563392 -9223063 + L1ME4a LINE L1 5597 5713 -408 1497 173 32 18 chr12 134563443 134563727 -9222728 + AluJo SINE Alu 1 288 -24 2083 109 0 3 chr12 134563870 134564163 -9222292 - AluSg SINE Alu -18 292 1 496 264 100 38 chr12 134564169 134564408 -9222047 + L1ME4a LINE L1 5863 6116 -5 1957 169 48 48 chr12 134565269 134565726 -9220729 - MER31B LTR ERV1 -9 457 1 331 189 79 102 chr12 134565844 134565971 -9220484 - MLT1H LTR MaLR 0 549 426 1758 152 0 52 chr12 134566403 134566603 -9219852 - AluJb SINE Alu 0 312 134 2131 113 0 3 chr12 134566603 134566903 -9219552 + AluSq SINE Alu 1 299 -14 1758 152 0 52 chr12 134566903 134567031 -9219424 - AluJb SINE Alu -178 134 1 1971 119 0 3 chr12 134567409 134567695 -9218760 - AluSg SINE Alu -25 285 1 857 279 69 36 chr12 134567820 134568210 -9218245 - LTR16C LTR ERVL -6 485 83 1670 161 7 7 chr12 134568388 134568679 -9217776 - AluSx SINE Alu -17 295 5 550 290 2 1 chr12 134568690 134568854 -9217601 - MER58B DNA MER1_type -14 327 164 24 0 0 0 chr12 134569027 134569051 -9217404 + GC_rich Low_complexity Low_complexity 1 24 0 384 307 201 15 chr12 134569457 134569532 -9216923 + L2 LINE L2 2318 2378 -936 1870 136 146 31 chr12 134569532 134569915 -9216540 - MSTC LTR MaLR 0 428 2 384 307 201 15 chr12 134569915 134570243 -9216212 + L2 LINE L2 2378 2796 -518 236 285 196 31 chr12 134570500 134570791 -9215664 - L1ME LINE L1 -206 5915 5577 544 334 83 50 chr12 134771466 134771947 -9014508 + HAL1 LINE L1 875 1303 -1204 465 239 11 23 chr12 134771984 134772391 -9014064 + G-rich Low_complexity Low_complexity 1 402 0 189 159 48 16 chr12 134772452 134772515 -9013940 + G-rich Low_complexity Low_complexity 5 69 0 465 208 35 23 chr12 134772531 134772704 -9013751 + G-rich Low_complexity Low_complexity 6 180 0 222 259 12 12 chr12 134772719 134772804 -9013651 + G-rich Low_complexity Low_complexity 6 90 0 1987 123 0 13 chr12 134773124 134773424 -9013031 + AluSx SINE Alu 1 296 -16 705 249 35 25 chr12 134773425 134773622 -9012833 + L1ME3A LINE L1 5964 6162 -8 307 274 68 26 chr12 134773974 134774091 -9012364 - MER117 DNA MER1_type -8 189 68 1928 157 0 0 chr12 134774131 134774431 -9012024 - AluJo SINE Alu -11 301 2 1081 305 94 12 chr12 134774984 134775482 -9010973 + MLT1K LTR MaLR 13 588 0 498 345 62 25 chr12 134775697 134775972 -9010483 - L3 LINE CR1 -1170 407 123 1643 166 3 26 chr12 134776233 134776541 -9009914 - AluJo SINE Alu -11 301 1 261 232 0 0 chr12 134776718 134776787 -9009668 + (TATG)n Simple_repeat Simple_repeat 3 71 0 3774 166 43 31 chr12 134776808 134776891 -9009564 - L1MB5 LINE L1 -10 6164 6083 1939 127 7 3 chr12 134776891 134777182 -9009273 - AluSx SINE Alu -20 292 1 3774 166 43 31 chr12 134777182 134777870 -9008585 - L1MB5 LINE L1 -91 6083 5384 422 337 36 4 chr12 134777860 134778112 -9008343 - L1MC4a LINE L1 -1877 5931 5672 * 912 75 27 7 chr12 134778256 134778402 -9008053 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 1222 112 6 0 chr12 134778406 134778576 -9007879 - AluSx SINE Alu -32 280 110 703 91 20 0 chr12 134778642 134778741 -9007714 - AluSx SINE Alu -211 102 2 561 194 19 9 chr12 134778998 134779106 -9007349 + MER81 DNA DNA 3 111 -3 548 258 172 15 chr12 134780403 134780670 -9005785 + LTR16A1 LTR ERVL 142 450 -7 288 77 0 0 chr12 134780965 134781004 -9005451 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1441 176 48 11 chr12 134781004 134781277 -9005178 - AluJo SINE Alu -29 283 1 623 241 78 0 chr12 134781780 134781994 -9004461 - MIR SINE MIR -12 250 21 335 247 47 0 chr12 134782122 134782207 -9004248 + MIR SINE MIR 74 162 -100 732 164 136 14 chr12 134782305 134782445 -9004010 + AluJo SINE Alu 39 195 -117 195 42 0 0 chr12 134782453 134782477 -9003978 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 590 324 14 31 chr12 134782859 134783146 -9003309 - L1ME2 LINE L1 -206 5958 5677 1233 271 92 84 chr12 134783161 134783278 -9003177 - MER20B DNA MER1_type -11 772 657 248 70 23 0 chr12 134783278 134783321 -9003134 + (CA)n Simple_repeat Simple_repeat 2 45 0 1233 271 92 84 chr12 134783321 134783425 -9003030 - MER20B DNA MER1_type -126 657 555 1495 166 4 8 chr12 134783425 134783684 -9002771 + AluJb SINE Alu 29 286 -26 1233 271 92 84 chr12 134783684 134784202 -9002253 - MER20B DNA MER1_type -228 555 26 1462 130 22 86 chr12 134784562 134784916 -9001539 - L1P4 LINE L1 -727 5438 5120 2198 121 0 0 chr12 134784916 134785221 -9001234 + AluSx SINE Alu 1 305 -7 1462 130 22 86 chr12 134785221 134785319 -9001136 - L1P4 LINE L1 -1045 5120 5017 5030 102 10 7 chr12 134785321 134786025 -9000430 + L1PA15 LINE L1 5460 6165 0 2036 259 24 82 chr12 134786031 134786833 -8999622 - L1ME2 LINE L1 -15 6149 5395 512 259 76 0 chr12 134787105 134787263 -8999192 + MIR SINE MIR 10 179 -83 207 0 0 0 chr12 134787474 134787497 -8998958 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1690 159 4 0 chr12 134787510 134787787 -8998668 - AluJb SINE Alu -32 280 3 862 202 23 0 chr12 134787831 134788004 -8998451 - MER5A DNA MER1_type -12 177 1 272 295 79 29 chr12 134788036 134788175 -8998280 + MER5A DNA MER1_type 38 183 -6 2414 82 0 0 chr12 134788242 134788547 -8997908 - AluSc SINE Alu -4 305 1 2182 103 0 19 chr12 134788996 134789307 -8997148 - AluSx SINE Alu -7 305 1 1221 208 23 23 chr12 134789316 134789619 -8996836 - AluJo SINE Alu -9 303 1 437 358 147 13 chr12 134789812 134790200 -8996255 - L2 LINE L2 -62 3251 2812 556 245 26 1 chr12 134790648 134790790 -8995665 + MER45A DNA AcHobo 34 178 0 204 273 45 0 chr12 134791538 134791604 -8994851 - L2 LINE L2 0 3272 3204 202 288 25 38 chr12 134791605 134791685 -8994770 + L2 LINE L2 3235 3313 0 548 224 33 26 chr12 134791711 134791863 -8994592 - MIR SINE MIR -11 251 99 779 252 89 77 chr12 134792256 134792769 -8993686 + MLT1H LTR MaLR 20 592 -3 1774 228 63 9 chr12 134793279 134793722 -8992733 + MLT1C LTR MaLR 1 467 0 2032 115 3 0 chr12 134793816 134794104 -8992351 + AluSx SINE Alu 1 289 -23 666 281 123 21 chr12 134794111 134794650 -8991805 + L2 LINE L2 2531 3115 -198 1062 203 89 124 chr12 134795055 134795206 -8991249 - L1MC3 LINE L1 0 7785 7630 1646 167 3 3 chr12 134795206 134795488 -8990967 - AluJb SINE Alu -30 282 1 1062 203 89 124 chr12 134795488 134795795 -8990660 - L1MC3 LINE L1 -155 7630 7343 373 258 10 0 chr12 134796322 134796419 -8990036 + MIR SINE MIR 90 187 -75 303 236 186 12 chr12 134796518 134796679 -8989776 + L2 LINE L2 2804 2992 -321 200 260 0 0 chr12 134797405 134797455 -8989000 + MER91B DNA MER1_type 1 50 -140 517 241 45 0 chr12 134797766 134797899 -8988556 + MIR SINE MIR 27 165 -97 278 323 7 0 chr12 134798996 134799151 -8987304 + (CA)n Simple_repeat Simple_repeat 1 156 0 204 294 0 18 chr12 134799203 134799312 -8987143 + (CA)n Simple_repeat Simple_repeat 2 108 0 259 291 190 0 chr12 134799348 134799427 -8987028 + MER53 DNA DNA 1 94 -95 227 233 0 0 chr12 134799397 134799440 -8987015 - MER53 DNA DNA -54 135 93 * 266 363 111 7 chr12 134799943 134800078 -8986377 - MER5B DNA MER1_type -29 149 1 560 288 14 0 chr12 134800105 134800251 -8986204 - MER117 DNA MER1_type 0 197 50 632 310 2 25 chr12 134800396 134800633 -8985822 - MIR SINE MIR -2 260 30 765 138 0 0 chr12 134800820 134800929 -8985526 + AluJo SINE Alu 2 110 -202 757 164 19 69 chr12 134801031 134801190 -8985265 + AluJo SINE Alu 119 269 -43 1385 266 94 35 chr12 134801293 134801590 -8984865 - MLT1E LTR MaLR -17 576 298 222 37 0 0 chr12 134801590 134801617 -8984838 + (GA)n Simple_repeat Simple_repeat 1 27 0 1385 266 94 35 chr12 134801617 134801860 -8984595 - MLT1E LTR MaLR -295 298 4 2427 195 22 30 chr12 134801922 134802360 -8984095 - L1MB3 LINE L1 0 6183 5743 3891 80 34 48 chr12 134802360 134802484 -8983971 - MER41A LTR ERV1 0 554 430 2534 51 0 3 chr12 134802484 134802795 -8983660 + AluY SINE Alu 1 310 -1 3891 80 34 48 chr12 134802795 134802875 -8983580 - MER41A LTR ERV1 -124 430 350 2130 113 6 3 chr12 134802875 134803186 -8983269 - AluSq SINE Alu -1 312 1 3891 80 34 48 chr12 134803186 134803542 -8982913 - MER41A LTR ERV1 -204 350 1 2427 195 22 30 chr12 134803542 134803641 -8982814 - L1MB3 LINE L1 -440 5743 5650 397 311 131 36 chr12 134803841 134804372 -8982083 + L2 LINE L2 2685 3272 0 249 281 22 72 chr12 134805034 134805173 -8981282 - MIR SINE MIR -118 144 13 * 536 262 7 7 chr12 134805113 134805254 -8981201 + MIR SINE MIR 16 156 -106 2650 216 17 47 chr12 134805268 134805850 -8980605 - L1MB7 LINE L1 -47 6137 5574 1987 106 41 7 chr12 134805850 134806322 -8980133 + AluSx SINE Alu 1 482 0 2650 216 17 47 chr12 134806322 134806399 -8980056 - L1MB7 LINE L1 -610 5574 5496 2718 151 12 31 chr12 134806487 134806971 -8979484 + L1MB3 LINE L1 5708 6182 -1 546 221 161 99 chr12 134807075 134807459 -8978996 + MLT1L LTR MaLR 197 604 -11 1570 201 7 10 chr12 134807521 134807820 -8978635 - AluJo SINE Alu -14 298 1 472 324 78 15 chr12 134807829 134808033 -8978422 + MIR SINE MIR 29 245 -17 293 244 24 0 chr12 134809230 134809312 -8977143 + L2 LINE L2 2859 2942 -371 288 240 175 13 chr12 134809455 134809609 -8976846 + L2 LINE L2 2921 3099 -214 1162 238 196 23 chr12 134810341 134810862 -8975593 + MLT1G LTR MaLR 1 574 -16 951 266 86 4 chr12 134811382 134811638 -8974817 - MLT1I LTR MaLR -7 402 126 429 190 0 0 chr12 134811871 134811950 -8974505 + MLT1D LTR MaLR 1 79 -426 1657 173 35 91 chr12 134811960 134812198 -8974257 - MLT1B LTR MaLR -10 380 171 1635 177 14 10 chr12 134812198 134812492 -8973963 + AluJo SINE Alu 1 295 -17 1657 173 35 91 chr12 134812492 134812651 -8973804 - MLT1B LTR MaLR -219 171 5 1578 208 88 30 chr12 134812648 134813048 -8973407 + MLT1D LTR MaLR 75 497 -8 * 302 284 178 68 chr12 134813698 134813766 -8972689 - L1ME2 LINE L1 -2 6162 6103 1544 180 0 40 chr12 134813766 134814066 -8972389 - AluJo SINE Alu -24 288 1 302 284 178 68 chr12 134814066 134814261 -8972194 - L1ME2 LINE L1 -61 6103 5870 423 190 33 66 chr12 134814261 134814382 -8972073 + MER58B DNA MER1_type 1 117 -224 3695 166 7 98 chr12 134814383 134814637 -8971818 - L1MC2 LINE L1 -25 6319 6044 2304 100 0 0 chr12 134814637 134814946 -8971509 + AluSg SINE Alu 1 309 -1 3695 166 7 98 chr12 134814946 134815317 -8971138 - L1MC2 LINE L1 -300 6044 5794 1941 133 3 0 chr12 134815317 134815602 -8970853 - AluSx SINE Alu -21 291 6 3695 166 7 98 chr12 134815602 134815856 -8970599 - L1MC2 LINE L1 -550 5794 5519 909 193 36 40 chr12 134815860 134815952 -8970503 + MER58B DNA MER1_type 81 172 -2248 1781 158 23 3 chr12 134815952 134816256 -8970199 - AluJo SINE Alu -2 310 1 909 193 36 40 chr12 134816256 134816386 -8970069 + MER58B DNA MER1_type 172 302 -39 2201 101 0 16 chr12 134816396 134816704 -8969751 - AluSx SINE Alu -5 307 5 1148 236 32 0 chr12 134816750 134817000 -8969455 - L1ME2 LINE L1 -293 5873 5616 652 295 40 17 chr12 134817392 134817732 -8968723 + MLT1J2 LTR MaLR 4 353 -56 2927 72 0 0 chr12 134817844 134818231 -8968224 + MER41A LTR ERV1 1 387 -167 2341 87 0 0 chr12 134818231 134818542 -8967913 + AluY SINE Alu 1 311 0 242 298 24 12 chr12 134818551 134818635 -8967820 - Charlie8 DNA MER1_type -2331 86 2 312 267 163 0 chr12 134818639 134818725 -8967730 - L2 LINE L2 0 3313 3214 277 315 174 5 chr12 134819306 134819490 -8966965 + MIR SINE MIR 34 248 -14 258 310 0 19 chr12 134819977 134820135 -8966320 + (CA)n Simple_repeat Simple_repeat 1 155 0 329 167 0 111 chr12 134820542 134820595 -8965860 - MLT1L LTR MaLR -10 605 564 934 225 66 14 chr12 134820595 134820808 -8965647 + MER58A DNA MER1_type 1 224 0 329 167 0 111 chr12 134820808 134820844 -8965611 - MLT1L LTR MaLR -51 564 526 802 268 79 63 chr12 134820873 134821246 -8965209 - MLT1H1 LTR MaLR -7 548 164 2149 100 3 13 chr12 134821246 134821545 -8964910 - AluSx SINE Alu -16 296 1 802 268 79 63 chr12 134821545 134821663 -8964792 - MLT1H1 LTR MaLR -391 164 49 1133 250 131 78 chr12 134821844 134821867 -8964588 - L1ME3A LINE L1 -8 6162 6142 2040 115 3 13 chr12 134821867 134822171 -8964284 + AluSx SINE Alu 1 301 -11 1133 250 131 78 chr12 134822171 134822720 -8963735 - L1ME3A LINE L1 -28 6142 5560 237 287 51 56 chr12 134822967 134823079 -8963376 - L1ME4a LINE L1 -4 6117 6005 5351 80 12 4 chr12 134823079 134823765 -8962690 - LTR8 LTR ERV1 0 691 1 237 287 51 56 chr12 134823765 134823847 -8962608 - L1ME4a LINE L1 -116 6005 5924 255 294 0 65 chr12 134823851 134823943 -8962512 - MIR SINE MIR -31 231 146 1891 143 14 0 chr12 134823955 134824242 -8962213 - AluSx SINE Alu -21 291 1 515 163 0 0 chr12 134824243 134824329 -8962126 - MIR SINE MIR -98 164 79 1604 168 45 15 chr12 134825074 134825408 -8961047 + MLT1A1 LTR MaLR 1 344 -21 459 332 67 10 chr12 134825461 134825814 -8960641 - L2 LINE L2 -289 3024 2642 391 226 123 0 chr12 134826434 134826540 -8959915 - MER117 DNA MER1_type 0 197 79 247 279 0 0 chr12 134826602 134826663 -8959792 - MIR3 SINE MIR -49 159 99 243 405 20 7 chr12 134826817 134826965 -8959490 + L3b LINE CR1 1317 1466 -117 1121 211 46 8 chr12 134827768 134828005 -8958450 - MLT1F1 LTR MaLR 0 567 322 694 157 7 29 chr12 134828005 134828145 -8958310 - MLT1B LTR MaLR 0 390 254 422 213 0 0 chr12 134828193 134828273 -8958182 + L1MB3 LINE L1 6088 6167 -16 378 0 0 0 chr12 134828273 134828315 -8958140 + (CA)n Simple_repeat Simple_repeat 1 42 0 247 300 25 0 chr12 134828322 134828402 -8958053 + MIR SINE MIR 40 121 -87 481 193 138 7 chr12 134828404 134828549 -8957906 - LTR33 LTR ERVL -340 181 18 213 299 234 0 chr12 134828950 134829057 -8957398 - L2 LINE L2 -4 3268 3137 22 0 0 0 chr12 134829088 134829110 -8957345 + AT_rich Low_complexity Low_complexity 1 22 0 1651 166 10 26 chr12 134829122 134829424 -8957031 + AluJb SINE Alu 8 304 -8 506 217 0 68 chr12 134829522 134829683 -8956772 + MLT1A1 LTR MaLR 1 150 -215 1140 131 0 6 chr12 134829691 134829866 -8956589 + AluSq SINE Alu 137 310 -3 890 193 37 28 chr12 134829872 134830090 -8956365 + MLT1A1 LTR MaLR 145 364 -1 540 248 16 0 chr12 134830091 134830212 -8956243 - MIR SINE MIR -118 144 22 696 266 103 63 chr12 134830294 134830674 -8955781 + L1ME1 LINE L1 5463 5857 -309 314 162 0 4 chr12 134830679 134830746 -8955709 + AluJo SINE Alu 6 56 -245 870 170 0 0 chr12 134830746 134830881 -8955574 + AluJo SINE Alu 31 165 -147 590 168 23 39 chr12 134830931 134831101 -8955354 - L1ME1 LINE L1 -135 6031 5863 1423 95 0 0 chr12 134831168 134831347 -8955108 - AluSx SINE Alu -133 179 1 2388 94 0 0 chr12 134831699 134832007 -8954448 - AluSx SINE Alu -4 308 1 213 246 174 0 chr12 134832013 134832082 -8954373 - L2 LINE L2 -5 3308 3228 335 308 13 31 chr12 134832725 134832884 -8953571 + L1MC4a LINE L1 5782 5937 -1871 2096 215 5 23 chr12 134832923 134833170 -8953285 - L1PB4 LINE L1 -8 6148 5911 2018 104 40 7 chr12 134833170 134833468 -8952987 - AluSx SINE Alu -4 308 1 2096 215 5 23 chr12 134833468 134833652 -8952803 - L1PB4 LINE L1 -245 5911 5725 704 256 198 47 chr12 134833666 134833875 -8952580 - L2 LINE L2 -9 3304 3128 2080 123 0 0 chr12 134833875 134834175 -8952280 + AluSx SINE Alu 1 300 -12 704 256 198 47 chr12 134834175 134834390 -8952065 - L2 LINE L2 -185 3128 2816 406 299 163 24 chr12 134835736 134836030 -8950425 - L2 LINE L2 -123 3190 2856 374 82 49 16 chr12 134836027 134836088 -8950367 + MIR3 SINE MIR 94 156 -52 * 533 282 7 0 chr12 134836173 134836315 -8950140 - L2 LINE L2 -250 3063 2921 436 286 15 8 chr12 134836933 134837066 -8949389 + MIR SINE MIR 100 233 -29 1219 208 15 1 chr12 134837260 134837713 -8948742 - MLT1D LTR MaLR -1 504 3 187 402 54 9 chr12 134837716 134837828 -8948627 - MIR SINE MIR -119 143 27 405 277 0 10 chr12 134837919 134838020 -8948435 - L2 LINE L2 -20 3252 3153 969 288 145 16 chr12 134838042 134838545 -8947910 - MLT1L LTR MaLR -25 590 23 655 244 155 5 chr12 134838546 134838739 -8947716 + MIR SINE MIR 41 262 0 273 326 138 32 chr12 134838970 134839188 -8947267 - MIR SINE MIR 0 262 22 1734 198 36 29 chr12 134839262 134839376 -8947079 + L1MB5 LINE L1 5360 5472 -708 2177 98 0 0 chr12 134839376 134839683 -8946772 - AluSc SINE Alu 0 309 1 1734 198 36 29 chr12 134839683 134839987 -8946468 + L1MB5 LINE L1 5472 5781 -399 1062 201 53 32 chr12 134839989 134840272 -8946183 + L1MB5 LINE L1 5884 6172 -2 625 141 16 43 chr12 134840272 134840456 -8945999 + GA-rich Low_complexity Low_complexity 1 179 0 645 319 107 11 chr12 134841017 134841399 -8945056 + L2 LINE L2 2041 2459 -855 190 287 6 131 chr12 134841642 134841712 -8944743 - MIR SINE MIR -67 141 119 2638 35 0 0 chr12 134841712 134842022 -8944433 + AluY SINE Alu 2 311 0 190 287 6 131 chr12 134842022 134842089 -8944366 - MIR SINE MIR -89 119 45 697 303 117 14 chr12 134842117 134842553 -8943902 - MLT1L LTR MaLR -4 611 131 528 63 0 63 chr12 134842768 134842799 -8943656 + MADE1 DNA Mariner 5 36 -44 2153 106 3 41 chr12 134842799 134843119 -8943336 - AluSx SINE Alu -4 308 1 528 63 0 63 chr12 134843119 134843166 -8943289 + MADE1 DNA Mariner 36 78 -2 289 107 18 18 chr12 134843205 134843261 -8943194 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr12 134843543 134843567 -8942888 + GC_rich Low_complexity Low_complexity 1 24 0 432 281 0 0 chr12 134844384 134844562 -8941893 + (TG)n Simple_repeat Simple_repeat 2 179 0 309 391 9 0 chr12 134844562 134844677 -8941778 + L1MC4 LINE L1 6588 6703 -1339 384 273 0 0 chr12 134844681 134844824 -8941631 + (TG)n Simple_repeat Simple_repeat 2 144 0 570 245 101 7 chr12 134844975 134845114 -8941341 - MIR SINE MIR -73 189 38 280 203 27 40 chr12 134845336 134845410 -8941045 + MIR SINE MIR 63 135 -127 2165 111 0 13 chr12 134845426 134845741 -8940714 - AluSx SINE Alu -1 311 1 214 325 69 44 chr12 134846326 134846529 -8939926 + L2 LINE L2 2697 2904 -410 299 164 8 131 chr12 134847021 134847112 -8939343 + MER96B DNA MER1_type? 69 143 -274 2227 97 0 10 chr12 134847112 134847411 -8939044 - AluSx SINE Alu -16 296 1 299 164 8 131 chr12 134847411 134847441 -8939014 + MER96B DNA MER1_type? 143 175 -242 301 276 171 8 chr12 134847977 134848100 -8938355 + L2 LINE L2 2920 3062 -251 240 258 5 68 chr12 134849212 134849402 -8937053 + (CGGGG)n Simple_repeat Simple_repeat 3 180 0 208 248 7 51 chr12 134849340 134849477 -8936978 + G-rich Low_complexity Low_complexity 6 136 0 * 23 33 0 0 chr12 134849528 134849558 -8936897 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr12 134849584 134849611 -8936844 + GC_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr12 134849707 134849728 -8936727 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 134849761 134849786 -8936669 + GC_rich Low_complexity Low_complexity 1 25 0 311 309 101 24 chr12 134850255 134850423 -8936032 - L1MCa LINE L1 -5129 1297 1117 545 278 47 12 chr12 134850903 134851072 -8935383 - MER5B DNA MER1_type -2 176 2 902 303 16 8 chr12 134851585 134851839 -8934616 - MIR SINE MIR -1 261 6 502 343 139 14 chr12 134852722 134853081 -8933374 - L2 LINE L2 -3 3310 2907 490 45 0 0 chr12 134853083 134853149 -8933306 + L1PB1 LINE L1 6047 6112 -39 23 0 0 0 chr12 134853524 134853547 -8932908 + AT_rich Low_complexity Low_complexity 1 23 0 3001 86 7 5 chr12 134853548 134853954 -8932501 - L1PB1 LINE L1 -3 6148 5742 1176 150 8 0 chr12 134854744 134855120 -8931335 + (TGGA)n Simple_repeat Simple_repeat 1 379 0 269 273 0 0 chr12 134855605 134855671 -8930784 + MLT1K LTR MaLR 184 249 -339 481 304 78 5 chr12 134855748 134855939 -8930516 + MLT1K LTR MaLR 377 581 -7 1901 168 0 13 chr12 134856619 134856929 -8929526 - AluJo SINE Alu -6 306 1 251 301 24 0 chr12 134856987 134857070 -8929385 + MLT1I LTR MaLR 286 370 -39 185 302 94 9 chr12 134857339 134857445 -8929010 - L2 LINE L2 -5 3267 3153 382 258 10 0 chr12 134857770 134857867 -8928588 - MER3 DNA MER1_type -8 201 104 1226 234 116 39 chr12 134858359 134858534 -8927921 + MLT1C LTR MaLR 4 164 -303 2257 103 0 0 chr12 134858534 134858834 -8927621 + AluSx SINE Alu 1 300 -12 1226 234 116 39 chr12 134858834 134859089 -8927366 + MLT1C LTR MaLR 164 467 0 276 327 0 18 chr12 134859438 134859548 -8926907 - LTR16A1 LTR ERVL -294 163 56 755 299 16 8 chr12 134860049 134860293 -8926162 - MIR SINE MIR -15 247 2 1727 185 187 9 chr12 134860968 134861395 -8925060 + MLT1D LTR MaLR 1 503 -2 241 281 21 31 chr12 134861395 134861491 -8924964 + MIR SINE MIR 79 173 -89 268 225 36 45 chr12 134864121 134864232 -8922223 - MLT1J2 LTR MaLR -336 111 1 1516 191 22 44 chr12 134864300 134864661 -8921794 - MLT1A1 LTR MaLR 0 365 13 22 0 0 0 chr12 134864663 134864685 -8921770 + AT_rich Low_complexity Low_complexity 1 22 0 894 103 0 0 chr12 134864825 134864961 -8921494 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 187 368 49 35 chr12 134864961 134865096 -8921359 - L2 LINE L2 -9 3304 3165 524 356 83 14 chr12 134865435 134865797 -8920658 + L2 LINE L2 2925 3311 -2 21 57 0 0 chr12 134866239 134866274 -8920181 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr12 134866442 134866470 -8919985 + (T)n Simple_repeat Simple_repeat 1 28 0 1768 204 110 21 chr12 134867727 134868153 -8918302 - MLT1C LTR MaLR 0 467 4 746 317 66 6 chr12 134868966 134869329 -8917126 + L1MC4 LINE L1 7254 7638 -404 1729 264 16 18 chr12 134869335 134869835 -8916620 - LTR40a LTR ERVL -20 499 1 250 81 0 0 chr12 134869860 134869897 -8916558 + U2 snRNA snRNA 1 37 -151 539 270 55 5 chr12 134869935 134870135 -8916320 + L1MC4 LINE L1 7689 7898 -144 360 0 0 0 chr12 134870169 134870209 -8916246 + (GA)n Simple_repeat Simple_repeat 1 40 0 291 183 0 28 chr12 134870912 134870983 -8915472 - MLT1C LTR MaLR -372 95 27 673 277 22 73 chr12 134871121 134871266 -8915189 - L1MD3 LINE L1 -10 7985 7834 1814 129 18 4 chr12 134871266 134871577 -8914878 + AluJo SINE Alu 1 315 0 673 277 22 73 chr12 134871577 134871785 -8914670 - L1MD3 LINE L1 -161 7834 7647 2037 136 7 0 chr12 134872833 134873127 -8913328 - AluJb SINE Alu -16 296 1 199 387 0 0 chr12 134873721 134873796 -8912659 - L2 LINE L2 -49 3223 3149 2542 34 0 3 chr12 134873913 134874210 -8912245 + AluY SINE Alu 1 296 -15 926 293 28 20 chr12 134874245 134874603 -8911852 - L1MC4 LINE L1 -141 7901 7541 204 253 33 77 chr12 134876767 134876858 -8909597 - MER5B DNA MER1_type -41 137 51 518 285 52 36 chr12 134877300 134877493 -8908962 - MIR SINE MIR -20 242 47 249 340 19 28 chr12 134878735 134878841 -8907614 - MIR SINE MIR 0 262 158 207 370 12 0 chr12 134879232 134879313 -8907142 - MIR SINE MIR -104 158 77 439 326 22 11 chr12 134879959 134880137 -8906318 + MER5A DNA MER1_type 10 189 0 195 339 47 31 chr12 134881747 134881874 -8904581 - MIR SINE MIR -118 144 16 244 325 179 18 chr12 134886244 134886524 -8899931 + L2 LINE L2 2540 2864 -450 192 40 0 0 chr12 134888164 134888189 -8898266 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 209 159 23 0 chr12 134888231 134888275 -8898180 + GA-rich Low_complexity Low_complexity 2 46 0 1955 125 4 4 chr12 134889702 134889981 -8896474 + AluSx SINE Alu 1 279 -33 230 54 0 27 chr12 134889981 134890018 -8896437 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1366 177 8 27 chr12 134890023 134890283 -8896172 + AluJb SINE Alu 46 300 -12 296 272 10 10 chr12 134890284 134890387 -8896068 - L1ME3 LINE L1 -18 6144 6042 205 219 62 31 chr12 134891488 134891552 -8894903 + MER5A DNA MER1_type 15 80 -109 * 357 224 0 95 chr12 134891540 134891583 -8894872 - MER5A DNA MER1_type -80 109 64 2395 82 0 0 chr12 134891583 134891886 -8894569 - AluSx SINE Alu -9 303 1 357 224 0 95 chr12 134891886 134891958 -8894497 - MER5A DNA MER1_type -125 64 5 1770 148 42 0 chr12 134891984 134892267 -8894188 - AluJo SINE Alu -16 296 2 213 304 0 38 chr12 134892388 134892467 -8893988 - L2 LINE L2 0 3272 3197 222 265 0 20 chr12 134892573 134892622 -8893833 - L2 LINE L2 -8 3305 3258 182 278 0 0 chr12 134893033 134893069 -8893386 - L3 LINE CR1 -116 1461 1426 836 264 24 9 chr12 134893878 134894090 -8892365 - MER58C DNA MER1_type 0 215 1 468 226 0 0 chr12 134894262 134894386 -8892069 + (TG)n Simple_repeat Simple_repeat 1 124 0 523 293 32 27 chr12 134894395 134894583 -8891872 + MIR SINE MIR 31 219 -43 287 211 48 19 chr12 134896158 134896262 -8890193 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 345 263 102 29 chr12 134897738 134897875 -8888580 - L2 LINE L2 -6 3307 3161 2143 120 7 0 chr12 134898583 134898882 -8887573 + AluSx SINE Alu 1 301 -11 226 359 0 0 chr12 134899146 134899252 -8887203 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 335 194 0 19 chr12 134899255 134899358 -8887097 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 359 213 21 21 chr12 134899615 134899709 -8886746 + (CCTA)n Simple_repeat Simple_repeat 1 94 0 440 205 0 25 chr12 134899715 134899876 -8886579 + (CCCA)n Simple_repeat Simple_repeat 2 158 0 348 202 0 48 chr12 134899904 134900092 -8886363 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 294 269 28 28 chr12 134900124 134900232 -8886223 + (CCCA)n Simple_repeat Simple_repeat 1 108 0 203 213 21 0 chr12 134900394 134900441 -8886014 + (CTG)n Simple_repeat Simple_repeat 2 49 0 231 333 18 9 chr12 134901257 134901368 -8885087 + LTR33A LTR ERVL 406 517 -6 2008 143 3 0 chr12 134901478 134901779 -8884676 - AluSg SINE Alu -8 302 1 2497 52 3 0 chr12 134902600 134902909 -8883546 - AluY SINE Alu 0 311 2 721 316 55 46 chr12 134903675 134903860 -8882595 - L2 LINE L2 0 3313 3131 2198 113 0 7 chr12 134903860 134904170 -8882285 - AluSq SINE Alu -5 308 1 721 316 55 46 chr12 134904170 134904437 -8882018 - L2 LINE L2 -182 3131 2857 413 386 30 5 chr12 134906306 134906508 -8879947 + MIR SINE MIR 53 259 -3 229 284 27 36 chr12 134906509 134906598 -8879857 + MIR SINE MIR 70 156 -65 519 230 103 0 chr12 134907161 134907287 -8879168 + MIR SINE MIR 28 166 -96 1945 170 3 0 chr12 134907328 134907639 -8878816 + AluJb SINE Alu 1 312 0 205 103 0 0 chr12 134908323 134908352 -8878103 + MIR SINE MIR 117 145 -117 261 275 0 0 chr12 134909679 134909748 -8876707 + Charlie8 DNA MER1_type 70 138 -2279 195 225 0 0 chr12 134910680 134910720 -8875735 - L3 LINE CR1 -116 1461 1422 931 262 33 8 chr12 134911156 134911400 -8875055 - MIR SINE MIR 0 262 13 799 183 84 70 chr12 134911574 134911787 -8874668 - MER20 DNA MER1_type -3 216 1 210 286 0 0 chr12 134911793 134911849 -8874606 + L3 LINE CR1 1426 1481 -96 287 298 152 14 chr12 134911886 134912033 -8874422 + MIR SINE MIR 8 171 -37 1726 152 24 7 chr12 134912622 134912911 -8873544 - AluJo SINE Alu -18 294 1 401 324 155 14 chr12 134913863 134914153 -8872302 + L2 LINE L2 2899 3229 -84 200 318 146 0 chr12 134915290 134915400 -8871055 + MIR3 SINE MIR 70 195 -13 * 265 127 164 0 chr12 134915396 134915451 -8871004 - MIR SINE MIR -119 143 80 223 284 15 15 chr12 134915594 134915661 -8870794 - MIR3 SINE MIR -38 170 104 497 307 93 23 chr12 134916012 134916432 -8870023 + L2 LINE L2 2553 3019 -253 1503 187 3 21 chr12 134917402 134917691 -8868764 - AluJo SINE Alu -23 289 6 860 143 7 20 chr12 134917691 134917838 -8868617 - AluJo SINE Alu -167 145 1 677 236 124 0 chr12 134917838 134917999 -8868456 + MER58A DNA MER1_type 40 220 -4 282 237 0 0 chr12 134918035 134918111 -8868344 + (TG)n Simple_repeat Simple_repeat 1 76 0 213 237 0 0 chr12 134918148 134918207 -8868248 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 216 228 0 0 chr12 134918240 134918297 -8868158 + (TG)n Simple_repeat Simple_repeat 1 57 0 249 250 0 0 chr12 134918330 134918406 -8868049 + (TG)n Simple_repeat Simple_repeat 1 76 0 210 222 0 0 chr12 134918439 134918493 -8867962 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 261 0 0 chr12 134918526 134918591 -8867864 + (TG)n Simple_repeat Simple_repeat 2 66 0 189 269 0 0 chr12 134918619 134918686 -8867769 + (TG)n Simple_repeat Simple_repeat 2 68 0 298 374 75 5 chr12 134918751 134918938 -8867517 - MIR SINE MIR -14 248 49 653 260 45 5 chr12 134919068 134919268 -8867187 - MIR SINE MIR -51 211 4 232 250 0 57 chr12 134919565 134919653 -8866802 + MER117 DNA MER1_type 78 160 -37 507 298 130 51 chr12 134920566 134921078 -8865377 + L2 LINE L2 2487 3038 -275 197 328 67 45 chr12 134921134 134921268 -8865187 + L2 LINE L2 3160 3296 -17 707 120 19 0 chr12 134921287 134921395 -8865060 + AluSc SINE Alu 199 308 -1 523 295 92 35 chr12 134921987 134922214 -8864241 + Charlie8 DNA MER1_type 26 265 -2152 190 224 41 0 chr12 134925099 134925148 -8861307 + L2 LINE L2 3137 3187 -85 1382 246 132 34 chr12 134926414 134926920 -8859535 + L1MB7 LINE L1 5551 6119 -65 1526 189 17 37 chr12 134926920 134927216 -8859239 - AluJo SINE Alu -22 290 1 1382 246 132 34 chr12 134927216 134927271 -8859184 + L1MB7 LINE L1 6119 6167 -17 22 0 0 0 chr12 134927387 134927409 -8859046 + AT_rich Low_complexity Low_complexity 1 22 0 2070 137 3 6 chr12 134928019 134928332 -8858123 - AluSx SINE Alu 0 312 1 204 317 17 0 chr12 134928491 134928551 -8857904 + MIR SINE MIR 89 149 -113 299 234 265 45 chr12 134928923 134929282 -8857173 + L2 LINE L2 2826 3263 -50 227 227 91 15 chr12 134929492 134929558 -8856897 - MIR3 SINE MIR -51 157 87 194 253 27 13 chr12 134931634 134931709 -8854746 + L2 LINE L2 2878 2953 -360 842 288 107 7 chr12 134931719 134932132 -8854323 + MLT1C LTR MaLR 7 460 -7 232 309 72 0 chr12 134932139 134932236 -8854219 + L2 LINE L2 2955 3058 -255 416 248 16 24 chr12 134933370 134933495 -8852960 + MIR SINE MIR 48 171 -91 180 156 0 89 chr12 134934473 134934518 -8851937 + MIR SINE MIR 108 148 -114 239 319 33 11 chr12 134934799 134934890 -8851565 + L3 LINE CR1 1049 1141 -436 332 272 119 15 chr12 134935412 134935613 -8850842 - MIR SINE MIR -30 232 8 203 302 32 0 chr12 134935670 134935733 -8850722 + MIR SINE MIR 80 144 -118 543 310 12 12 chr12 134935762 134935933 -8850522 - MER5A DNA MER1_type -1 188 18 233 316 0 0 chr12 134935927 134935984 -8850471 + MIR SINE MIR 195 251 -11 * 350 273 227 0 chr12 134936054 134936182 -8850273 + MIR SINE MIR 28 184 -78 2148 117 0 7 chr12 134937962 134938269 -8848186 + AluSx SINE Alu 1 305 -7 596 363 78 15 chr12 134939234 134939633 -8846822 - L2 LINE L2 -5 3308 2885 1266 236 116 7 chr12 134940076 134940483 -8845972 + MLT1C LTR MaLR 1 451 -16 219 321 161 0 chr12 134941369 134941450 -8845005 - MIR SINE MIR -1 261 168 1047 254 157 18 chr12 134941452 134941986 -8844469 + L2 LINE L2 2709 3312 -1 319 274 48 0 chr12 134942005 134942089 -8844366 - MIR SINE MIR -143 119 32 22 0 0 0 chr12 134942332 134942354 -8844101 + GC_rich Low_complexity Low_complexity 1 22 0 730 272 83 0 chr12 134943190 134943418 -8843037 - MIR SINE MIR -1 261 15 246 81 0 0 chr12 134943437 134943474 -8842981 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 913 272 18 0 chr12 134943531 134943755 -8842700 - MIR SINE MIR -34 228 1 518 305 48 5 chr12 134944055 134944242 -8842213 - MIR SINE MIR -20 242 48 215 359 0 0 chr12 134944411 134944503 -8841952 + G-rich Low_complexity Low_complexity 1 92 0 184 262 49 0 chr12 134945059 134945120 -8841335 + MIR SINE MIR 60 123 -139 199 244 0 0 chr12 134945370 134945415 -8841040 + MIR SINE MIR 106 150 -112 247 146 36 0 chr12 134945434 134945489 -8840966 + GA-rich Low_complexity Low_complexity 3 59 0 339 25 0 0 chr12 134947606 134947646 -8838809 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 211 176 20 39 chr12 134948457 134948508 -8837947 + G-rich Low_complexity Low_complexity 6 55 0 197 32 0 32 chr12 134949274 134949305 -8837150 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 232 283 9 35 chr12 134949697 134949810 -8836645 + GA-rich Low_complexity Low_complexity 6 115 0 382 210 25 25 chr12 134949816 134950313 -8836142 + G-rich Low_complexity Low_complexity 1 497 0 262 326 82 0 chr12 134951770 134951905 -8834550 - MIR3 SINE MIR -62 146 1 246 235 184 20 chr12 134952271 134952369 -8834086 - MIR SINE MIR -40 222 109 237 271 47 24 chr12 134952530 134952615 -8833840 + MIR SINE MIR 106 192 -70 184 306 42 14 chr12 134953201 134953273 -8833182 + MIR SINE MIR 84 157 -105 306 363 57 8 chr12 134953278 134953402 -8833053 + MIR SINE MIR 33 162 -100 572 297 77 26 chr12 134954468 134954663 -8831792 + MIR SINE MIR 47 251 -11 2598 175 44 76 chr12 134954666 134954774 -8831681 + MER44D DNA MER2_type 1 111 -2376 1875 128 30 20 chr12 134954774 134955071 -8831384 - AluSg SINE Alu -10 300 1 2598 175 44 76 chr12 134955071 134955343 -8831112 + MER44D DNA MER2_type 111 415 -2072 2206 104 0 10 chr12 134955343 134955651 -8830804 - AluSx SINE Alu -7 305 1 2598 175 44 76 chr12 134955651 134955836 -8830619 + MER44D DNA MER2_type 415 604 -1 2453 164 7 7 chr12 134955856 134956264 -8830191 - L1MB5 LINE L1 0 6174 5767 211 156 44 0 chr12 134956287 134956332 -8830123 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 395 305 85 13 chr12 134956508 134956827 -8829628 - L2 LINE L2 -266 3047 2601 245 356 75 20 chr12 134957474 134957620 -8828835 + MIR SINE MIR 80 233 -29 350 274 35 9 chr12 134957975 134958088 -8828367 - MIR SINE MIR -67 195 80 472 247 118 16 chr12 134958377 134958563 -8827892 + MER20 DNA MER1_type 15 219 0 240 307 59 10 chr12 134958640 134958741 -8827714 - MIR SINE MIR -73 135 30 206 333 14 14 chr12 134958762 134958834 -8827621 - MER5A DNA MER1_type -67 122 51 392 274 28 0 chr12 134959440 134959546 -8826909 - MIR SINE MIR -41 221 113 268 209 30 30 chr12 134959626 134959693 -8826762 + MER116 DNA Mariner 7 73 -7 1818 158 9 22 chr12 134960397 134960713 -8825742 + AluJb SINE Alu 1 312 0 1626 174 82 92 chr12 134960987 134961052 -8825403 - MLT1D LTR MaLR -21 484 420 1800 140 24 14 chr12 134961052 134961345 -8825110 - AluJo SINE Alu -16 296 1 1626 174 82 92 chr12 134961345 134961768 -8824687 - MLT1D LTR MaLR -85 420 1 291 299 17 51 chr12 134961979 134962096 -8824359 - L3 LINE CR1 -954 623 511 558 240 16 0 chr12 134963431 134963560 -8822895 + MIR SINE MIR 73 203 -59 226 268 24 24 chr12 134963878 134963960 -8822495 - MIR SINE MIR -91 171 90 324 327 53 0 chr12 134964303 134964416 -8822039 - MIR SINE MIR -33 229 111 601 312 189 19 chr12 134964715 134964937 -8821518 - L2 LINE L2 -7 3306 3123 1980 104 42 10 chr12 134964937 134965225 -8821230 + AluSx SINE Alu 1 297 -15 601 312 189 19 chr12 134965225 134965563 -8820892 - L2 LINE L2 -190 3123 2641 825 246 44 6 chr12 134965576 134965960 -8820495 - MLT1C LTR MaLR 0 467 51 273 290 99 50 chr12 134966668 134966930 -8819525 - L2 LINE L2 -459 2855 2581 199 226 226 35 chr12 134968387 134968502 -8817953 + MIR3 SINE MIR 5 141 -67 2122 152 12 20 chr12 134968547 134968890 -8817565 - MER58B DNA MER1_type -1 340 1 326 189 90 63 chr12 134969620 134969731 -8816724 - MER3 DNA MER1_type 0 209 96 371 229 73 0 chr12 134969800 134969896 -8816559 - MER3 DNA MER1_type -105 104 2 1865 165 0 0 chr12 134970093 134970384 -8816071 + AluJo SINE Alu 1 291 -21 630 213 23 11 chr12 134970501 134970675 -8815780 - MER3 DNA MER1_type -18 191 16 241 304 96 26 chr12 134970696 134970811 -8815644 - MIR SINE MIR -90 172 50 311 294 105 21 chr12 134971269 134971412 -8815043 - MIR SINE MIR -59 203 49 253 337 23 0 chr12 134971471 134971557 -8814898 - MIR SINE MIR -63 145 58 214 179 250 0 chr12 134971802 134971858 -8814597 + MIR SINE MIR 80 149 -113 757 200 106 1 chr12 134972284 134972478 -8813977 + MIR SINE MIR 48 262 0 198 0 0 0 chr12 134972880 134972902 -8813553 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 603 275 6 19 chr12 134974067 134974227 -8812228 - MIR SINE MIR -75 187 30 30 83 0 0 chr12 134975866 134975938 -8810517 + GC_rich Low_complexity Low_complexity 1 72 0 378 42 0 0 chr12 134975949 134975997 -8810458 + (CGG)n Simple_repeat Simple_repeat 1 48 0 21 57 0 0 chr12 134976061 134976096 -8810359 + GC_rich Low_complexity Low_complexity 1 35 0 211 268 0 0 chr12 134976136 134976192 -8810263 + (CACG)n Simple_repeat Simple_repeat 4 59 0 281 196 54 0 chr12 134976631 134976687 -8809768 + L2 LINE L2 3189 3247 -66 183 42 0 0 chr12 134976790 134976814 -8809641 + (CA)n Simple_repeat Simple_repeat 1 24 0 541 278 181 51 chr12 134978607 134978799 -8807656 + L2 LINE L2 2825 2991 -322 2268 104 3 0 chr12 134978799 134979107 -8807348 + AluSp SINE Alu 1 309 -4 541 278 181 51 chr12 134979107 134979346 -8807109 + L2 LINE L2 2991 3312 -1 617 133 0 0 chr12 134979528 134979611 -8806844 + FRAM SINE Alu 69 151 -25 2249 90 10 0 chr12 134979624 134979924 -8806531 + AluSx SINE Alu 1 303 -9 1812 105 4 0 chr12 134980327 134980574 -8805881 + AluSx SINE Alu 55 302 -10 979 207 0 0 chr12 134980673 134980837 -8805618 - FRAM SINE Alu -2 164 1 213 246 174 0 chr12 134980844 134980913 -8805542 - L2 LINE L2 -5 3308 3228 335 308 13 31 chr12 134981556 134981715 -8804740 + L1MC4a LINE L1 5782 5937 -1871 2096 215 5 23 chr12 134981754 134982001 -8804454 - L1PB4 LINE L1 -8 6148 5911 2041 100 40 7 chr12 134982001 134982300 -8804155 - AluSx SINE Alu -3 309 1 2096 215 5 23 chr12 134982300 134982484 -8803971 - L1PB4 LINE L1 -245 5911 5725 755 260 192 47 chr12 134982498 134982707 -8803748 - L2 LINE L2 -9 3304 3127 2080 123 0 0 chr12 134982707 134983007 -8803448 + AluSx SINE Alu 1 300 -12 755 260 192 47 chr12 134983007 134983224 -8803231 - L2 LINE L2 -186 3127 2816 407 299 163 24 chr12 134984570 134984864 -8801591 - L2 LINE L2 -123 3190 2856 374 82 49 16 chr12 134984861 134984922 -8801533 + MIR3 SINE MIR 94 156 -52 * 533 282 7 0 chr12 134985007 134985149 -8801306 - L2 LINE L2 -250 3063 2921 436 286 15 8 chr12 134985767 134985900 -8800555 + MIR SINE MIR 100 233 -29 1230 206 15 1 chr12 134986094 134986547 -8799908 - MLT1D LTR MaLR -1 504 3 405 277 0 10 chr12 134986754 134986855 -8799600 - L2 LINE L2 -20 3252 3153 1002 284 145 16 chr12 134986877 134987380 -8799075 - MLT1L LTR MaLR -25 590 23 655 244 155 5 chr12 134987381 134987574 -8798881 + MIR SINE MIR 41 262 0 270 344 138 32 chr12 134987805 134988023 -8798432 - MIR SINE MIR 0 262 22 1734 198 36 29 chr12 134988097 134988211 -8798244 + L1MB5 LINE L1 5360 5472 -708 2239 102 0 3 chr12 134988211 134988515 -8797940 - AluSc SINE Alu -6 303 1 1734 198 36 29 chr12 134988515 134988819 -8797636 + L1MB5 LINE L1 5472 5781 -399 1062 201 53 32 chr12 134988821 134989104 -8797351 + L1MB5 LINE L1 5884 6172 -2 625 141 16 43 chr12 134989104 134989288 -8797167 + GA-rich Low_complexity Low_complexity 1 179 0 647 321 107 10 chr12 134989849 134990232 -8796223 + L2 LINE L2 2041 2460 -854 184 285 6 139 chr12 134990474 134990544 -8795911 - MIR SINE MIR -67 141 120 2656 32 0 0 chr12 134990544 134990854 -8795601 + AluY SINE Alu 2 311 0 184 285 6 139 chr12 134990854 134990922 -8795533 - MIR SINE MIR -88 120 45 697 303 117 14 chr12 134990950 134991386 -8795069 - MLT1L LTR MaLR -4 611 131 528 63 0 63 chr12 134991581 134991612 -8794843 + MADE1 DNA Mariner 5 36 -44 2153 106 3 41 chr12 134991612 134991932 -8794523 - AluSx SINE Alu -4 308 1 528 63 0 63 chr12 134991932 134991979 -8794476 + MADE1 DNA Mariner 36 78 -2 343 130 14 14 chr12 134992018 134992087 -8794368 + CT-rich Low_complexity Low_complexity 4 72 0 243 0 0 0 chr12 134992134 134992161 -8794294 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 1422 175 45 11 chr12 134992161 134992430 -8794025 - AluJo SINE Alu -34 278 1 351 221 96 10 chr12 134992494 134992598 -8793857 + L1ME3A LINE L1 5522 5634 -536 1409 178 50 8 chr12 134992600 134992884 -8793571 + AluJb SINE Alu 22 316 0 855 248 113 50 chr12 134992904 134992966 -8793489 + L1ME3A LINE L1 5705 5762 -408 1963 86 36 14 chr12 134992966 134993295 -8793160 + AluSx SINE Alu 1 335 0 855 248 113 50 chr12 134993295 134993465 -8792990 + L1ME3A LINE L1 5762 5920 -250 2017 123 0 13 chr12 134993465 134993765 -8792690 + AluSx SINE Alu 1 296 -16 855 248 113 50 chr12 134993765 134993963 -8792492 + L1ME3A LINE L1 5920 6162 -8 285 265 68 26 chr12 134994315 134994432 -8792023 - MER117 DNA MER1_type -8 189 68 1959 157 0 0 chr12 134994472 134994771 -8791684 - AluJo SINE Alu -11 301 3 262 326 82 0 chr12 134995407 134995542 -8790913 - MIR3 SINE MIR -62 146 1 246 235 184 20 chr12 134995908 134996006 -8790449 - MIR SINE MIR -40 222 109 237 271 47 24 chr12 134996167 134996252 -8790203 + MIR SINE MIR 106 192 -70 184 306 42 14 chr12 134996838 134996910 -8789545 + MIR SINE MIR 84 157 -105 306 363 57 8 chr12 134996915 134997039 -8789416 + MIR SINE MIR 33 162 -100 572 297 77 26 chr12 134998104 134998299 -8788156 + MIR SINE MIR 47 251 -11 2620 173 44 76 chr12 134998302 134998410 -8788045 + MER44D DNA MER2_type 1 111 -2376 1875 128 30 20 chr12 134998410 134998707 -8787748 - AluSg SINE Alu -10 300 1 2620 173 44 76 chr12 134998707 134998979 -8787476 + MER44D DNA MER2_type 111 415 -2072 2206 104 0 10 chr12 134998979 134999287 -8787168 - AluSx SINE Alu -7 305 1 2620 173 44 76 chr12 134999287 134999472 -8786983 + MER44D DNA MER2_type 415 604 -1 2453 164 7 7 chr12 134999492 134999900 -8786555 - L1MB5 LINE L1 0 6174 5767 211 156 44 0 chr12 134999923 134999968 -8786487 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 395 305 85 13 chr12 135000144 135000463 -8785992 - L2 LINE L2 -266 3047 2601 245 356 75 20 chr12 135001110 135001256 -8785199 + MIR SINE MIR 80 233 -29 350 274 35 9 chr12 135001611 135001724 -8784731 - MIR SINE MIR -67 195 80 461 259 119 11 chr12 135002013 135002198 -8784257 + MER20 DNA MER1_type 15 219 0 240 307 59 10 chr12 135002275 135002376 -8784079 - MIR SINE MIR -73 135 30 206 333 14 14 chr12 135002397 135002469 -8783986 - MER5A DNA MER1_type -67 122 51 406 264 28 0 chr12 135003075 135003181 -8783274 - MIR SINE MIR -41 221 113 268 209 30 30 chr12 135003261 135003328 -8783127 + MER116 DNA Mariner 7 73 -7 1798 161 9 22 chr12 135004032 135004348 -8782107 + AluJb SINE Alu 1 312 0 1601 176 82 92 chr12 135004622 135004687 -8781768 - MLT1D LTR MaLR -21 484 420 1800 140 24 14 chr12 135004687 135004980 -8781475 - AluJo SINE Alu -16 296 1 1601 176 82 92 chr12 135004980 135005403 -8781052 - MLT1D LTR MaLR -85 420 1 291 299 17 51 chr12 135005614 135005731 -8780724 - L3 LINE CR1 -954 623 511 558 240 16 0 chr12 135007066 135007195 -8779260 + MIR SINE MIR 73 203 -59 226 268 24 24 chr12 135007513 135007595 -8778860 - MIR SINE MIR -91 171 90 324 327 53 0 chr12 135007938 135008051 -8778404 - MIR SINE MIR -33 229 111 604 310 189 19 chr12 135008350 135008572 -8777883 - L2 LINE L2 -7 3306 3123 1869 118 42 10 chr12 135008572 135008861 -8777594 + AluSx SINE Alu 1 298 -14 604 310 189 19 chr12 135008861 135009199 -8777256 - L2 LINE L2 -190 3123 2641 825 246 44 6 chr12 135009212 135009596 -8776859 - MLT1C LTR MaLR 0 467 51 279 298 95 46 chr12 135010303 135010565 -8775890 - L2 LINE L2 -459 2855 2581 187 255 29 78 chr12 135010810 135010912 -8775543 - MIR SINE MIR -80 182 86 199 226 226 35 chr12 135012022 135012137 -8774318 + MIR3 SINE MIR 5 141 -67 2122 152 12 20 chr12 135012182 135012525 -8773930 - MER58B DNA MER1_type -1 340 1 326 189 90 63 chr12 135013255 135013366 -8773089 - MER3 DNA MER1_type 0 209 96 371 229 73 0 chr12 135013435 135013531 -8772924 - MER3 DNA MER1_type -105 104 2 1865 165 0 0 chr12 135013728 135014019 -8772436 + AluJo SINE Alu 1 291 -21 630 213 23 11 chr12 135014136 135014310 -8772145 - MER3 DNA MER1_type -18 191 16 241 304 96 26 chr12 135014331 135014446 -8772009 - MIR SINE MIR -90 172 50 311 294 105 21 chr12 135014904 135015047 -8771408 - MIR SINE MIR -59 203 49 253 326 21 11 chr12 135015102 135015197 -8771258 - MIR SINE MIR -114 148 53 214 179 250 0 chr12 135015437 135015493 -8770962 + MIR SINE MIR 80 149 -113 757 200 106 1 chr12 135015919 135016113 -8770342 + MIR SINE MIR 48 262 0 198 0 0 0 chr12 135016515 135016537 -8769918 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 31 44 0 0 chr12 135017535 135017580 -8768875 + GC_rich Low_complexity Low_complexity 1 45 0 229 167 0 0 chr12 135017939 135017981 -8768474 + GA-rich Low_complexity Low_complexity 3 44 0 293 405 0 7 chr12 135019215 135019363 -8767092 + L2 LINE L2 2660 2806 -508 455 280 130 0 chr12 135019414 135019614 -8766841 + L2 LINE L2 2924 3149 -164 861 259 19 14 chr12 135022733 135022945 -8763510 + MIR SINE MIR 30 242 -20 220 330 46 0 chr12 135023125 135023234 -8763221 - MIR SINE MIR -134 128 15 213 306 172 38 chr12 135023243 135023400 -8763055 - MIR SINE MIR -12 250 73 459 272 66 7 chr12 135023446 135023498 -8762957 - MIR SINE MIR -40 222 174 1512 243 122 7 chr12 135023498 135023917 -8762538 + MLT1C LTR MaLR 1 467 0 459 272 66 7 chr12 135023917 135024000 -8762455 - MIR SINE MIR -88 174 79 1694 209 73 29 chr12 135024956 135025435 -8761020 + L1MB5 LINE L1 5673 6172 -2 201 261 102 34 chr12 135027506 135027594 -8758861 - MIR SINE MIR -77 185 92 439 235 65 41 chr12 135027715 135027885 -8758570 - MER20 DNA MER1_type -45 174 1 201 178 89 0 chr12 135028978 135029023 -8757432 - MIR SINE MIR -56 152 104 293 274 82 15 chr12 135029052 135029187 -8757268 - Charlie8 DNA MER1_type -2147 270 127 502 345 15 10 chr12 135029254 135029454 -8757001 - MIR SINE MIR -17 245 45 1951 157 0 19 chr12 135029996 135030308 -8756147 + AluJo SINE Alu 1 306 -6 291 161 0 0 chr12 135031511 135031567 -8754888 + CT-rich Low_complexity Low_complexity 6 61 0 426 39 0 0 chr12 135031585 135031637 -8754818 + (CTG)n Simple_repeat Simple_repeat 1 52 0 442 336 28 24 chr12 135031862 135032073 -8754382 + MIR SINE MIR 16 227 -35 241 234 0 0 chr12 135032214 135032261 -8754194 + MIR SINE MIR 107 153 -55 233 293 163 0 chr12 135033919 135034042 -8752413 - MIR SINE MIR -40 222 80 737 196 34 56 chr12 135034986 135035165 -8751290 + MER5B DNA MER1_type 4 178 0 737 197 138 11 chr12 135035171 135035359 -8751096 - MER58A DNA MER1_type 0 224 13 338 244 19 2 chr12 135035408 135035512 -8750943 - MER5A DNA MER1_type -71 107 14 381 298 133 15 chr12 135035957 135036157 -8750298 - MIR SINE MIR 0 262 36 276 176 0 20 chr12 135036831 135036882 -8749573 - L2 LINE L2 0 3272 3223 2475 59 0 0 chr12 135037146 135037450 -8749005 + AluY SINE Alu 1 304 -7 802 281 25 68 chr12 135037486 135037538 -8748917 - MER63B DNA MER1_type -709 353 300 1364 194 40 47 chr12 135037538 135037837 -8748618 + AluJo SINE Alu 1 297 -15 802 281 25 68 chr12 135037837 135038151 -8748304 - MER63B DNA MER1_type -762 300 3 539 326 86 20 chr12 135038303 135038699 -8747756 + L2 LINE L2 2819 3240 -73 1802 140 3 14 chr12 135038758 135039050 -8747405 - AluJb SINE Alu -21 291 3 390 245 0 68 chr12 135039969 135040132 -8746323 + G-rich Low_complexity Low_complexity 4 155 0 233 148 0 19 chr12 135040132 135040186 -8746269 + (GA)n Simple_repeat Simple_repeat 1 53 0 242 296 0 26 chr12 135040201 135040316 -8746139 + GA-rich Low_complexity Low_complexity 1 112 0 189 0 0 0 chr12 135040347 135040368 -8746087 + (GA)n Simple_repeat Simple_repeat 2 22 0 382 288 89 27 chr12 135041802 135041948 -8744507 + MER5A DNA MER1_type 30 184 -5 237 253 13 13 chr12 135042777 135042856 -8743599 + GA-rich Low_complexity Low_complexity 1 79 0 297 269 123 8 chr12 135043280 135043410 -8743045 + MIR SINE MIR 45 189 -73 201 229 0 0 chr12 135043452 135043500 -8742955 + (CACCAT)n Simple_repeat Simple_repeat 1 48 0 328 243 208 34 chr12 135045072 135045347 -8741108 + Charlie8 DNA MER1_type 86 276 -2141 2012 136 3 16 chr12 135047575 135047891 -8738564 + AluSx SINE Alu 1 312 0 929 254 9 0 chr12 135049025 135049238 -8737217 - MER58A DNA MER1_type -9 215 1 986 258 17 9 chr12 135049883 135050116 -8736339 + MIR SINE MIR 4 238 -24 203 138 0 0 chr12 135052137 135052166 -8734289 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 360 268 134 0 chr12 135053622 135053719 -8732736 - MIR SINE MIR -90 172 63 1353 109 43 52 chr12 135054790 135054888 -8731567 - MER30 DNA MER1_type 0 230 133 2427 90 0 0 chr12 135054888 135055199 -8731256 + AluY SINE Alu 1 311 0 1353 109 43 52 chr12 135055199 135055330 -8731125 - MER30 DNA MER1_type -97 133 3 253 304 22 44 chr12 135055556 135055692 -8730763 + MIR SINE MIR 26 165 -43 1348 234 92 3 chr12 135055936 135056317 -8730138 + MLT1C LTR MaLR 10 424 -43 396 0 0 0 chr12 135057840 135057884 -8728571 + (TG)n Simple_repeat Simple_repeat 2 45 0 368 287 0 11 chr12 135058204 135058298 -8728157 + MER5A DNA MER1_type 21 113 -76 713 279 0 0 chr12 135058389 135058568 -8727887 + MER3 DNA MER1_type 5 183 -26 388 286 101 10 chr12 135058944 135059143 -8727312 + LTR33 LTR ERVL 2 218 -303 490 191 103 37 chr12 135059762 135059898 -8726557 + MIR SINE MIR 48 192 -70 311 253 11 0 chr12 135060106 135060193 -8726262 - MER102b DNA MER1_type 0 341 254 344 260 0 12 chr12 135060649 135060894 -8725561 + (CA)n Simple_repeat Simple_repeat 1 241 0 436 206 0 27 chr12 135060936 135061120 -8725335 + (CA)n Simple_repeat Simple_repeat 2 180 0 501 174 12 17 chr12 135061149 135061321 -8725134 + (CAGA)n Simple_repeat Simple_repeat 2 172 0 409 189 0 53 chr12 135061331 135061521 -8724934 + (CA)n Simple_repeat Simple_repeat 1 180 0 478 198 11 6 chr12 135061576 135061753 -8724702 + (CAGA)n Simple_repeat Simple_repeat 1 178 0 226 221 11 33 chr12 135061766 135061947 -8724508 + (CAGA)n Simple_repeat Simple_repeat 4 180 0 288 218 30 10 chr12 135061965 135062066 -8724389 + (CAGA)n Simple_repeat Simple_repeat 1 103 0 384 323 47 16 chr12 135062188 135062380 -8724075 - MER3 DNA MER1_type -7 202 5 23 33 0 0 chr12 135062648 135062678 -8723777 + GC_rich Low_complexity Low_complexity 1 30 0 188 65 0 32 chr12 135063343 135063374 -8723081 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 600 14 0 0 chr12 135063380 135063449 -8723006 + (CA)n Simple_repeat Simple_repeat 2 70 0 210 299 13 13 chr12 135064081 135064158 -8722297 + L2 LINE L2 2647 2723 -591 328 257 81 44 chr12 135064258 135064394 -8722061 + L1MC4 LINE L1 7803 7943 -99 346 297 14 35 chr12 135064613 135064758 -8721697 + L2 LINE L2 2911 3052 -261 963 245 60 0 chr12 135065322 135065538 -8720917 + MIR SINE MIR 12 240 -22 2090 119 10 0 chr12 135066339 135066642 -8719813 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr12 135066643 135066680 -8719775 + (AAATG)n Simple_repeat Simple_repeat 4 40 0 642 174 0 0 chr12 135068203 135068370 -8718085 + GA-rich Low_complexity Low_complexity 2 168 0 362 206 0 23 chr12 135068397 135068572 -8717883 + GA-rich Low_complexity Low_complexity 2 172 0 517 70 32 107 chr12 135068592 135068779 -8717676 + (CAGAGA)n Simple_repeat Simple_repeat 3 175 0 205 186 0 0 chr12 135068781 135068824 -8717631 + GA-rich Low_complexity Low_complexity 2 44 0 467 96 25 76 chr12 135068829 135068986 -8717469 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 259 231 0 0 chr12 135068991 135069056 -8717399 + GA-rich Low_complexity Low_complexity 2 66 0 446 68 42 109 chr12 135069058 135069250 -8717205 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 488 85 32 90 chr12 135069299 135069487 -8716968 + (CAGAGA)n Simple_repeat Simple_repeat 3 179 0 186 286 0 0 chr12 135069543 135069592 -8716863 - MIR SINE MIR -73 135 87 335 146 0 34 chr12 135069657 135069746 -8716709 + (GA)n Simple_repeat Simple_repeat 2 87 0 1881 125 7 0 chr12 135070121 135070393 -8716062 + AluSp SINE Alu 11 284 -29 181 151 38 0 chr12 135072677 135072730 -8713725 + (TA)n Simple_repeat Simple_repeat 2 56 0 2064 108 0 3 chr12 135072730 135073016 -8713439 - AluSg SINE Alu -25 285 1 873 171 0 0 chr12 135073051 135073191 -8713264 + FRAM SINE Alu 25 164 -12 1765 113 4 0 chr12 135073290 135073537 -8712918 - AluSx SINE Alu -10 302 55 200 108 0 27 chr12 135074875 135074912 -8711543 + (CAG)n Simple_repeat Simple_repeat 3 38 0 1528 218 153 20 chr12 135075656 135076102 -8710353 - MLT1D LTR MaLR 0 505 1 338 200 38 0 chr12 135076794 135076874 -8709581 - MIR SINE MIR -131 131 49 354 301 10 10 chr12 135077419 135077522 -8708933 - MER81 DNA DNA -2 112 10 363 269 46 9 chr12 135077660 135077768 -8708687 + MIR SINE MIR 81 192 -70 246 219 51 131 chr12 135077892 135078029 -8708426 - MIR SINE MIR -20 242 117 187 97 65 0 chr12 135078268 135078299 -8708156 + MIR SINE MIR 117 149 -113 1619 213 26 24 chr12 135078760 135079177 -8707278 + Charlie1 DNA MER1_type 2343 2760 -1 2268 82 7 13 chr12 135079226 135079531 -8706924 + AluSx SINE Alu 1 303 -9 183 272 37 37 chr12 135079532 135079613 -8706842 - L2 LINE L2 -12 3260 3180 * 249 256 60 8 chr12 135079581 135079698 -8706757 - MIR SINE MIR -32 230 108 330 275 27 69 chr12 135079920 135080235 -8706220 + L2 LINE L2 2859 3214 -99 410 216 21 0 chr12 135080374 135080471 -8705984 - MER102b DNA MER1_type -159 182 84 212 262 8 103 chr12 135080519 135080645 -8705810 - L2 LINE L2 -203 3069 2956 2071 119 0 0 chr12 135081576 135081871 -8704584 - AluSc SINE Alu -14 295 1 267 197 15 30 chr12 135081970 135082036 -8704419 - MIR SINE MIR -62 146 82 * 376 296 184 52 chr12 135082028 135082393 -8704062 - L2 LINE L2 -2 3311 2899 1229 192 75 29 chr12 135082506 135082683 -8703772 - LTR54B LTR ERV1 -176 322 124 1753 156 36 7 chr12 135082683 135082857 -8703598 - AluJo SINE Alu -2 310 122 450 0 0 0 chr12 135082857 135082907 -8703548 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1753 156 36 7 chr12 135082907 135083033 -8703422 - AluJo SINE Alu -190 122 1 1229 192 75 29 chr12 135083033 135083163 -8703292 - LTR54B LTR ERV1 -374 124 1 228 276 49 55 chr12 135083163 135083326 -8703129 - L2 LINE L2 -183 3130 2969 256 128 0 0 chr12 135083332 135083371 -8703084 + L1MB2 LINE L1 5919 5957 -214 1075 146 0 0 chr12 135083372 135083543 -8702912 - L1MB3 LINE L1 -220 5963 5793 1169 284 56 38 chr12 135083550 135083977 -8702478 - L2 LINE L2 -337 2977 2538 2745 174 59 0 chr12 135083977 135084466 -8701989 - L1MB3 LINE L1 0 6183 5666 1169 284 56 38 chr12 135084466 135084542 -8701913 - L2 LINE L2 -776 2538 2465 305 348 72 5 chr12 135085057 135085278 -8701177 + L2 LINE L2 2870 3105 -167 805 266 68 0 chr12 135085320 135085557 -8700898 + MIR SINE MIR 1 253 -9 401 289 74 0 chr12 135087267 135087388 -8699067 - MIR SINE MIR -1 261 132 482 235 43 9 chr12 135087390 135087505 -8698950 - LTR16C LTR ERVL -180 311 193 1922 231 29 14 chr12 135087695 135088181 -8698274 - L1M4 LINE L1 -1771 4375 3883 292 282 0 29 chr12 135088183 135088286 -8698169 + MLT1L LTR MaLR 514 613 -2 2493 171 42 13 chr12 135088374 135088824 -8697631 - MLT1C LTR MaLR -4 463 1 515 244 67 0 chr12 135089637 135089772 -8696683 + L1ME3 LINE L1 5729 5872 -290 1420 190 0 19 chr12 135090794 135091062 -8695393 - AluJo SINE Alu -22 290 28 544 219 19 52 chr12 135091077 135091232 -8695223 - MLT1K LTR MaLR -32 556 407 804 300 13 0 chr12 135091318 135091551 -8694904 - MLT1K LTR MaLR -307 281 46 252 313 104 6 chr12 135091572 135091735 -8694720 + MIR SINE MIR 69 247 -15 1175 224 208 36 chr12 135091793 135092298 -8694157 + MLT1G1 LTR MaLR 2 593 -2 606 305 62 44 chr12 135093050 135093434 -8693021 + MER113 DNA MER1_type? 67 457 -64 551 238 226 0 chr12 135093516 135093680 -8692775 - MIR SINE MIR -47 215 15 967 220 143 13 chr12 135093754 135094069 -8692386 + MLT1C LTR MaLR 6 361 -106 261 288 0 6 chr12 135094064 135094152 -8692303 + MLT1D LTR MaLR 440 503 -2 * 193 191 0 0 chr12 135094336 135094378 -8692077 + MIR SINE MIR 80 121 -141 1449 211 74 59 chr12 135094407 135094828 -8691627 - MSTA LTR MaLR -1 427 1 540 167 83 42 chr12 135095062 135095149 -8691306 + MER3 DNA MER1_type 80 175 -34 2507 160 93 2 chr12 135095149 135095611 -8690844 - MLT1D LTR MaLR 0 505 2 540 167 83 42 chr12 135095611 135095643 -8690812 + MER3 DNA MER1_type 175 204 -5 295 235 206 0 chr12 135095653 135095755 -8690700 + L2 LINE L2 3149 3271 -1 335 280 0 20 chr12 135095862 135095962 -8690493 + MIR SINE MIR 48 145 -63 296 267 58 33 chr12 135096204 135096324 -8690131 + L2 LINE L2 2942 3064 -208 539 179 38 9 chr12 135096396 135096502 -8689953 - MIR SINE MIR -148 114 6 445 288 0 22 chr12 135096516 135096700 -8689755 + (CA)n Simple_repeat Simple_repeat 1 180 0 549 317 0 0 chr12 135096746 135096926 -8689529 + (CA)n Simple_repeat Simple_repeat 1 180 0 427 321 0 0 chr12 135096970 135097258 -8689197 + (CA)n Simple_repeat Simple_repeat 1 288 0 403 356 0 0 chr12 135097297 135097474 -8688981 + (CA)n Simple_repeat Simple_repeat 2 178 0 517 324 0 0 chr12 135097551 135097730 -8688725 + (CA)n Simple_repeat Simple_repeat 2 180 0 425 358 0 0 chr12 135097771 135097944 -8688511 + (CA)n Simple_repeat Simple_repeat 2 174 0 322 341 12 6 chr12 135097969 135098142 -8688313 + (CA)n Simple_repeat Simple_repeat 2 175 0 291 319 7 21 chr12 135098108 135098249 -8688206 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 * 197 250 0 14 chr12 135098262 135098334 -8688121 + (CA)n Simple_repeat Simple_repeat 1 71 0 1801 160 14 0 chr12 135098343 135098630 -8687825 - AluJo SINE Alu -21 291 1 267 93 0 0 chr12 135099663 135099706 -8686749 + (CAGG)n Simple_repeat Simple_repeat 3 45 0 318 160 213 0 chr12 135099843 135099918 -8686537 - L2 LINE L2 0 3313 3223 239 267 0 67 chr12 135099918 135100008 -8686447 - L2 LINE L2 -20 3293 3210 377 225 0 0 chr12 135100043 135100114 -8686341 - L2 LINE L2 -13 3300 3230 242 295 0 0 chr12 135100115 135100176 -8686279 - L2 LINE L2 -18 3295 3235 296 189 0 81 chr12 135100177 135100251 -8686204 - L2 LINE L2 -11 3302 3235 590 304 70 66 chr12 135100251 135100708 -8685747 - L2 LINE L2 -19 3294 2836 181 215 0 31 chr12 135101465 135101530 -8684925 + GA-rich Low_complexity Low_complexity 3 65 0 287 270 45 22 chr12 135101686 135101775 -8684680 - MIR SINE MIR -63 145 55 594 222 0 0 chr12 135101777 135101939 -8684516 + (TG)n Simple_repeat Simple_repeat 1 162 0 573 247 0 0 chr12 135101953 135102251 -8684204 + (TG)n Simple_repeat Simple_repeat 1 298 0 268 308 69 8 chr12 135102980 135103110 -8683345 + MIR SINE MIR 90 227 -35 1544 143 8 0 chr12 135103224 135103468 -8682987 - AluJo SINE Alu -30 282 37 444 236 47 0 chr12 135103470 135103596 -8682859 - MIR SINE MIR -64 144 21 319 356 0 0 chr12 135104182 135104283 -8682172 - MIR SINE MIR -71 137 37 507 246 33 0 chr12 135104338 135104460 -8681995 + MIR SINE MIR 76 201 -61 249 280 0 13 chr12 135104551 135104626 -8681829 - LTR16A1 LTR ERVL -101 356 283 538 303 95 11 chr12 135105175 135105439 -8681016 - MLT1L LTR MaLR 0 615 330 1772 130 3 11 chr12 135105471 135105804 -8680651 - AluSx SINE Alu 0 331 1 1034 158 11 16 chr12 135105831 135106014 -8680441 + AluJo SINE Alu 1 182 -130 281 303 97 55 chr12 135106043 135106164 -8680291 - MLT1L LTR MaLR -333 282 153 770 234 75 42 chr12 135106164 135106243 -8680212 + MER58A DNA MER1_type 4 79 -2341 1602 154 4 4 chr12 135106243 135106515 -8679940 - AluJo SINE Alu -7 305 34 770 234 75 42 chr12 135106515 135106649 -8679806 + MER58A DNA MER1_type 79 224 0 281 303 97 55 chr12 135106649 135106672 -8679783 - MLT1L LTR MaLR -462 153 132 322 226 140 0 chr12 135106789 135106882 -8679573 + MER5A DNA MER1_type 4 109 -80 1252 251 133 10 chr12 135106935 135107341 -8679114 - MLT1C LTR MaLR -10 457 2 415 261 150 22 chr12 135107942 135108232 -8678223 + L2 LINE L2 2772 3076 -237 273 345 11 0 chr12 135108277 135108364 -8678091 + L2 LINE L2 3221 3308 -5 357 230 0 0 chr12 135109003 135109077 -8677378 - MIR SINE MIR -81 181 108 2129 110 14 0 chr12 135109319 135109611 -8676844 - AluSx SINE Alu -16 296 1 807 278 11 0 chr12 135111045 135111236 -8675219 - MIR SINE MIR -1 261 69 315 234 138 0 chr12 135111671 135111765 -8674690 + MLT1L LTR MaLR 120 226 -389 736 193 37 27 chr12 135111833 135112020 -8674435 - MLT1F1 LTR MaLR 0 567 379 529 290 6 97 chr12 135112120 135112451 -8674004 + L2 LINE L2 3013 3313 0 285 51 0 0 chr12 135112553 135112592 -8673863 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 192 27 14 chr12 135112593 135112666 -8673789 + CT-rich Low_complexity Low_complexity 1 74 0 424 279 66 15 chr12 135112862 135112998 -8673457 + MIR3 SINE MIR 15 157 -51 703 299 10 5 chr12 135113745 135113952 -8672503 - MIR SINE MIR -37 225 18 2258 97 3 10 chr12 135114359 135114670 -8671785 + AluSx SINE Alu 1 309 -3 606 235 56 48 chr12 135114671 135115009 -8671446 - MLT1K LTR MaLR -72 516 69 390 316 66 7 chr12 135115321 135115457 -8670998 + MIR SINE MIR 116 259 -3 345 242 108 17 chr12 135115595 135115715 -8670740 + MIR SINE MIR 31 161 -101 336 216 14 0 chr12 135115862 135115936 -8670519 + MIR SINE MIR 59 133 -75 207 288 62 0 chr12 135116010 135116090 -8670365 + L2 LINE L2 2977 3061 -211 860 265 56 75 chr12 135116543 135117046 -8669409 - MLT1J LTR MaLR 0 511 17 814 254 22 0 chr12 135117104 135117289 -8669166 - MER5A DNA MER1_type 0 189 1 326 282 210 17 chr12 135117368 135117549 -8668906 - LTR33 LTR ERVL -2 519 304 225 65 0 0 chr12 135117852 135117883 -8668572 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 248 226 19 0 chr12 135117886 135117939 -8668516 - L2 LINE L2 -26 3246 3193 1579 191 0 3 chr12 135118746 135119028 -8667427 + AluJo SINE Alu 16 296 -16 1941 135 10 10 chr12 135119030 135119341 -8667114 + AluSq SINE Alu 1 311 -2 403 198 189 0 chr12 135119686 135119797 -8666658 - L1MB4 LINE L1 -1 6179 6040 404 302 36 14 chr12 135119799 135119938 -8666517 + MIR SINE MIR 81 222 -40 870 226 247 15 chr12 135119976 135120369 -8666086 + MLT1D LTR MaLR 20 503 -2 1949 141 0 22 chr12 135120705 135121024 -8665431 - AluJo SINE Alu 0 312 1 2648 167 75 4 chr12 135121768 135122222 -8664233 + MER66B LTR ERV1 1 486 0 180 0 0 0 chr12 135122568 135122588 -8663867 + (TA)n Simple_repeat Simple_repeat 2 21 0 1942 129 0 21 chr12 135122590 135122740 -8663715 - AluSx SINE Alu -31 281 129 192 97 0 0 chr12 135122740 135122771 -8663684 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1990 99 7 7 chr12 135122771 135123054 -8663401 - AluSg SINE Alu -27 283 1 1942 129 0 21 chr12 135123054 135123189 -8663266 - AluSx SINE Alu -181 131 1 213 94 0 0 chr12 135123628 135123660 -8662795 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 314 26 90 chr12 135123979 135124135 -8662320 + MIR3 SINE MIR 1 146 -62 565 258 0 0 chr12 135124210 135124330 -8662125 - L2 LINE L2 -3 3310 3191 475 242 15 30 chr12 135124950 135125082 -8661373 - MIR SINE MIR -120 142 13 366 121 0 17 chr12 135125172 135125230 -8661225 + AluJ/FLAM SINE Alu 1 57 -245 * 447 275 107 77 chr12 135125220 135125392 -8661063 - Charlie8 DNA MER1_type -26 1391 1226 1928 131 0 40 chr12 135125392 135125713 -8660742 - AluJb SINE Alu -4 308 1 447 275 107 77 chr12 135125713 135125842 -8660613 - Charlie8 DNA MER1_type -191 1226 24 827 178 0 0 chr12 135126998 135127127 -8659328 + AluJo/FLAM SINE Alu 1 129 -173 1922 110 3 20 chr12 135127129 135127421 -8659034 + AluSq SINE Alu 5 291 -22 37 0 0 0 chr12 135127421 135127458 -8658997 + AT_rich Low_complexity Low_complexity 1 37 0 1130 298 143 19 chr12 135127950 135128467 -8657988 - MLT1K LTR MaLR -1 587 7 1953 202 106 2 chr12 135128639 135129074 -8657381 + MLT1D LTR MaLR 26 505 0 1842 139 3 44 chr12 135129188 135129504 -8656951 - AluJb SINE Alu -9 303 1 784 330 50 11 chr12 135129750 135130108 -8656347 + LTR16B LTR ERVL 93 464 0 1641 184 3 16 chr12 135130141 135130457 -8655998 + AluJo SINE Alu 1 312 0 288 231 55 11 chr12 135130513 135130604 -8655851 - MER91A DNA MER1_type -101 95 1 224 286 39 0 chr12 135130855 135130932 -8655523 + MIR SINE MIR 53 132 -76 232 254 72 43 chr12 135131335 135131473 -8654982 + MER113 DNA MER1_type? 1 142 -379 1104 280 65 54 chr12 135131488 135131948 -8654507 + L1ME3 LINE L1 5668 6132 -30 469 15 15 30 chr12 135131959 135132026 -8654429 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2081 90 18 0 chr12 135132064 135132341 -8654114 + AluSx SINE Alu 20 301 -11 392 158 0 12 chr12 135132358 135132440 -8654015 + GA-rich Low_complexity Low_complexity 2 82 0 913 230 65 58 chr12 135132974 135133246 -8653209 + MLT1J LTR MaLR 5 367 -144 1933 123 0 7 chr12 135133246 135133557 -8652898 - AluJo SINE Alu 0 309 1 913 230 65 58 chr12 135133557 135133701 -8652754 + MLT1J LTR MaLR 367 508 -3 1903 129 0 4 chr12 135134179 135134458 -8651997 + AluSx SINE Alu 33 310 -2 250 218 0 0 chr12 135135116 135135171 -8651284 - Charlie7 DNA MER1_type -2199 413 359 1690 151 39 18 chr12 135135184 135135469 -8650986 - AluJo SINE Alu -21 291 1 271 322 68 0 chr12 135135469 135135587 -8650868 - Charlie7 DNA MER1_type -2233 379 254 510 242 121 6 chr12 135135605 135135770 -8650685 - MIR SINE MIR 0 262 79 991 185 9 45 chr12 135135771 135135993 -8650462 - MLT1A1 LTR MaLR -151 214 1 1768 141 7 39 chr12 135136021 135136327 -8650128 + AluJo SINE Alu 1 296 -16 1019 312 51 9 chr12 135136336 135136929 -8649526 + L1ME3A LINE L1 5479 6133 -31 2142 106 3 0 chr12 135136968 135137270 -8649185 - AluSq SINE Alu -9 304 2 1660 132 40 30 chr12 135137356 135137659 -8648796 + AluJo SINE Alu 1 306 -6 1842 121 4 4 chr12 135137659 135137924 -8648531 - AluSx SINE Alu -21 291 27 25 0 0 0 chr12 135137924 135137949 -8648506 + AT_rich Low_complexity Low_complexity 1 25 0 462 289 13 2 chr12 135138155 135138308 -8648147 + MIR SINE MIR 33 185 -62 304 301 141 15 chr12 135138337 135138543 -8647912 - L2 LINE L2 -2 3311 3080 467 270 36 8 chr12 135138715 135138876 -8647579 + L1MB4 LINE L1 5660 5824 -350 1638 196 67 0 chr12 135138939 135139281 -8647174 + L1MB4 LINE L1 5816 6180 0 1914 161 0 0 chr12 135139289 135139599 -8646856 + AluJo SINE Alu 1 310 -2 243 0 0 0 chr12 135139599 135139626 -8646829 + (CA)n Simple_repeat Simple_repeat 2 28 0 270 253 63 0 chr12 135139627 135139706 -8646749 + LTR16A1 LTR ERVL 213 296 -161 2196 125 0 0 chr12 135139882 135140195 -8646260 + AluSq SINE Alu 1 313 0 715 118 8 16 chr12 135140243 135140370 -8646085 + (GGAAA)n Simple_repeat Simple_repeat 4 129 0 203 195 0 0 chr12 135141495 135141536 -8644919 - L2 LINE L2 -2 3311 3271 377 332 121 48 chr12 135141646 135141977 -8644478 - MLT1H LTR MaLR -182 367 13 303 314 60 98 chr12 135142061 135142427 -8644028 - L2 LINE L2 -1 3271 2920 1835 132 9 2 chr12 135142623 135142927 -8643528 + L1PA13 LINE L1 5762 6071 -92 1983 93 35 10 chr12 135142952 135143264 -8643191 + HSMAR1 DNA Mariner 2 321 -966 3571 78 4 0 chr12 135143269 135143741 -8642714 + HSMAR1 DNA Mariner 812 1285 -2 689 65 0 0 chr12 135143743 135143836 -8642619 + L1PA13 LINE L1 6071 6163 0 943 183 5 40 chr12 135144044 135144246 -8642209 + L1PB3 LINE L1 5959 6153 -1 453 336 26 35 chr12 135144467 135144693 -8641762 - MIR SINE MIR -25 237 14 1824 255 59 30 chr12 135144770 135145732 -8640723 - L2 LINE L2 0 3313 2315 540 192 50 0 chr12 135146262 135146382 -8640073 + MIR SINE MIR 59 184 -78 273 326 153 21 chr12 135146423 135146567 -8639888 + MLT1I LTR MaLR 39 201 -208 320 156 31 94 chr12 135146627 135146723 -8639732 + MLT1I LTR MaLR 316 405 -4 326 263 12 0 chr12 135146728 135146808 -8639647 + MIR SINE MIR 182 262 0 918 237 113 70 chr12 135146855 135147184 -8639271 + MLT1E LTR MaLR 2 344 -249 388 250 42 10 chr12 135147185 135147281 -8639174 - MER81 DNA DNA -1 113 15 * 395 281 11 0 chr12 135147263 135147352 -8639103 - MER81 DNA DNA -16 98 9 2113 167 46 3 chr12 135147352 135147724 -8638731 - MLT1B LTR MaLR 0 390 3 828 171 108 0 chr12 135147743 135147919 -8638536 + MLT1E LTR MaLR 340 534 -59 906 85 0 0 chr12 135147920 135148068 -8638387 + AluSc SINE Alu 162 309 0 257 286 0 0 chr12 135148070 135148133 -8638322 + MLT1E LTR MaLR 530 592 -1 308 266 13 0 chr12 135148628 135148707 -8637748 - MER103 DNA DNA -24 142 63 2177 121 0 3 chr12 135148755 135149061 -8637394 - AluSx SINE Alu -7 305 1 379 329 43 6 chr12 135149068 135149229 -8637226 - MIR SINE MIR -69 193 27 223 125 62 50 chr12 135149571 135149651 -8636804 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 443 229 10 0 chr12 135149734 135149830 -8636625 - MIR SINE MIR -70 192 96 2312 51 20 3 chr12 135149895 135150188 -8636267 - AluY SINE Alu -13 298 1 277 337 0 0 chr12 135150290 135150376 -8636079 - MIR SINE MIR -14 248 163 280 149 0 0 chr12 135150380 135150427 -8636028 - MER103 DNA DNA -54 112 66 621 217 57 38 chr12 135150427 135150584 -8635871 - MIR SINE MIR -87 175 16 847 294 69 26 chr12 135151033 135151380 -8635075 - MLT1K LTR MaLR -7 581 220 324 267 67 0 chr12 135151567 135151717 -8634738 + LTR33 LTR ERVL 1 160 -361 300 271 133 35 chr12 135151760 135151963 -8634492 + LTR33 LTR ERVL 279 501 -20 868 137 0 0 chr12 135152113 135152244 -8634211 + L1MB3 LINE L1 6039 6169 -14 2158 95 7 13 chr12 135152853 135153159 -8633296 + AluSg SINE Alu 1 304 -6 1637 184 27 59 chr12 135153204 135153314 -8633141 - Charlie5 DNA MER1_type 0 2624 2512 1822 155 0 13 chr12 135153314 135153617 -8632838 + AluJb SINE Alu 13 311 -1 1637 184 27 59 chr12 135153617 135154092 -8632363 - Charlie5 DNA MER1_type -112 2512 3 2283 72 3 0 chr12 135154112 135154405 -8632050 + AluSq SINE Alu 1 294 -19 327 236 11 11 chr12 135154457 135154546 -8631909 - L1ME2 LINE L1 -233 5931 5843 775 270 33 14 chr12 135154618 135154930 -8631525 - L2 LINE L2 -234 3079 2762 1484 248 80 22 chr12 135154957 135155023 -8631432 - L1ME2 LINE L1 -255 5909 5848 2227 128 14 28 chr12 135155023 135155383 -8631072 - THE1A LTR MaLR 0 355 1 1484 248 80 22 chr12 135155383 135155828 -8630627 - L1ME2 LINE L1 -316 5848 5373 1796 126 0 7 chr12 135156062 135156331 -8630124 + AluSx SINE Alu 1 267 -45 1871 156 0 10 chr12 135156341 135156630 -8629825 - AluJb SINE Alu -26 286 1 313 99 62 111 chr12 135156630 135156684 -8629771 + MLT1A1 LTR MaLR 289 339 -26 2168 132 40 6 chr12 135156684 135157010 -8629445 + MER1B DNA MER1_type 1 337 0 313 99 62 111 chr12 135157010 135157036 -8629419 + MLT1A1 LTR MaLR 339 365 0 656 300 117 25 chr12 135157036 135157353 -8629102 - MLT1L LTR MaLR -81 534 189 180 77 0 0 chr12 135157853 135157879 -8628576 + (TC)n Simple_repeat Simple_repeat 2 27 0 408 348 90 17 chr12 135158050 135158395 -8628060 - L2 LINE L2 -30 3242 2873 905 103 0 44 chr12 135158578 135158714 -8627741 - FLAM_C SINE Alu -13 130 1 2181 96 0 0 chr12 135158874 135159201 -8627254 - AluSx SINE Alu 0 327 1 1968 138 0 0 chr12 135159201 135159497 -8626958 - AluJo SINE Alu -16 296 1 432 277 117 26 chr12 135159591 135159841 -8626614 - MLT1E1 LTR MaLR -332 261 1 515 182 0 0 chr12 135160282 135160370 -8626085 - MIR SINE MIR -117 145 58 245 214 18 0 chr12 135160370 135160426 -8626029 + MLT1K LTR MaLR 530 586 -2 268 282 48 58 chr12 135160459 135160487 -8625968 - MER112 DNA MER1_type -153 107 80 330 26 0 0 chr12 135160487 135160526 -8625929 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 282 48 58 chr12 135160526 135160600 -8625855 - MER112 DNA MER1_type -180 80 6 2032 133 0 0 chr12 135160601 135160930 -8625525 + AluSx SINE Alu 1 329 0 429 231 29 0 chr12 135160953 135161057 -8625398 + MER5A DNA MER1_type 3 109 -80 684 183 3 0 chr12 135161630 135161925 -8624530 + (CCCA)n Simple_repeat Simple_repeat 1 296 0 323 290 20 0 chr12 135161927 135162027 -8624428 - L2 LINE L2 0 3313 3212 * 338 303 71 19 chr12 135162021 135162196 -8624259 + MIR3 SINE MIR 66 250 -12 818 271 127 40 chr12 135162310 135162705 -8623750 + MLT1L LTR MaLR 180 608 -7 613 206 61 8 chr12 135163085 135163216 -8623239 + MIR SINE MIR 60 197 -65 1058 215 32 0 chr12 135163651 135163870 -8622585 - MIR SINE MIR 0 262 37 412 268 0 56 chr12 135164381 135164523 -8621932 - MIR3 SINE MIR -62 146 13 860 216 0 0 chr12 135164590 135164743 -8621712 - FRAM SINE Alu -16 160 8 488 287 92 10 chr12 135164786 135164981 -8621474 + MLT1K LTR MaLR 87 297 -291 2214 162 61 25 chr12 135165006 135165450 -8621005 - MLT1D LTR MaLR -45 460 1 401 239 45 22 chr12 135165476 135165610 -8620845 + MLT1K LTR MaLR 408 544 -44 195 42 0 0 chr12 135165612 135165636 -8620819 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 210 339 181 0 chr12 135165700 135165827 -8620628 + L2 LINE L2 3121 3270 -2 253 170 0 0 chr12 135166534 135166581 -8619874 + L2 LINE L2 2930 2976 -296 313 283 337 27 chr12 135166695 135166879 -8619576 - MIR SINE MIR -21 241 1 206 209 264 11 chr12 135166952 135167043 -8619412 + L2 LINE L2 3200 3313 0 383 183 82 0 chr12 135167043 135167129 -8619326 + MIR SINE MIR 69 162 -62 222 264 54 70 chr12 135168213 135168342 -8618113 - L2 LINE L2 -94 3219 3093 203 242 30 0 chr12 135168434 135168500 -8617955 + GA-rich Low_complexity Low_complexity 4 71 0 1870 143 23 0 chr12 135168650 135168950 -8617505 - AluJo SINE Alu -5 307 1 525 239 39 0 chr12 135168952 135169082 -8617373 + MER58C DNA MER1_type 79 213 -2 733 229 23 23 chr12 135169426 135169601 -8616854 - MLT1K LTR MaLR -2 586 412 860 148 311 29 chr12 135169608 135169852 -8616603 - AluYb8 SINE Alu -5 313 1 829 256 32 32 chr12 135169852 135170147 -8616308 - MLT1K LTR MaLR -190 398 1 244 164 18 36 chr12 135170184 135170239 -8616216 - MIR3 SINE MIR -52 156 103 397 273 108 14 chr12 135170392 135170531 -8615924 + L2 LINE L2 3121 3272 0 269 160 20 0 chr12 135170683 135170733 -8615722 + L2 LINE L2 3263 3313 0 225 119 0 0 chr12 135170829 135170871 -8615584 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 497 286 125 16 chr12 135171486 135171678 -8614777 + MIR SINE MIR 50 262 0 252 127 73 0 chr12 135172388 135172443 -8614012 + MIR SINE MIR 88 146 -116 473 242 143 6 chr12 135172966 135173127 -8613328 - MER5A DNA MER1_type 0 189 7 2202 95 14 0 chr12 135173152 135173448 -8613007 + AluSx SINE Alu 1 300 -12 561 240 128 0 chr12 135173561 135173740 -8612715 + MER20 DNA MER1_type 4 205 -14 1564 232 20 23 chr12 135173746 135174109 -8612346 + L1MB7 LINE L1 5661 6023 -161 1826 135 3 44 chr12 135174109 135174428 -8612027 - AluSq SINE Alu -7 306 1 1751 172 3 3 chr12 135174429 135174731 -8611724 - AluJb SINE Alu -7 305 4 1564 232 20 23 chr12 135174731 135174762 -8611693 + L1MB7 LINE L1 6022 6056 -128 359 196 203 55 chr12 135174891 135175054 -8611401 - MIR SINE MIR -12 250 64 355 317 18 4 chr12 135175634 135175781 -8610674 + MIR SINE MIR 6 149 -59 455 281 85 38 chr12 135176400 135176635 -8609820 + MLT1J LTR MaLR 231 476 -35 1700 136 63 33 chr12 135176647 135176949 -8609506 - AluJo SINE Alu -1 311 1 242 85 21 64 chr12 135176949 135176996 -8609459 + MLT1J2 LTR MaLR 406 450 0 227 224 0 0 chr12 135177375 135177424 -8609031 - L2 LINE L2 -1 3312 3264 343 238 54 0 chr12 135177424 135177554 -8608901 - L2 LINE L2 -14 3299 3158 1067 270 74 33 chr12 135177810 135178177 -8608278 + MLT1I LTR MaLR 28 409 0 216 323 20 10 chr12 135178177 135178276 -8608179 - MIR SINE MIR -116 146 47 1001 283 20 37 chr12 135178710 135179010 -8607445 + MLT1K LTR MaLR 16 310 -278 268 296 0 25 chr12 135179022 135179103 -8607352 + L2 LINE L2 3234 3312 -1 275 317 83 8 chr12 135179111 135179231 -8607224 + MIR SINE MIR 33 161 -101 720 255 160 37 chr12 135179329 135179623 -8606832 - MLT1H LTR MaLR -195 354 25 433 261 34 8 chr12 135179687 135179806 -8606649 + L2 LINE L2 3183 3304 -9 622 292 98 0 chr12 135180937 135181159 -8605296 - MIR SINE MIR -16 246 2 3048 131 37 50 chr12 135181214 135181247 -8605208 + L1MB2 LINE L1 5613 5645 -526 1657 181 4 0 chr12 135181247 135181551 -8604904 - AluJo SINE Alu 0 305 1 3048 131 37 50 chr12 135181551 135181680 -8604775 + L1MB2 LINE L1 5645 5774 -397 387 105 0 0 chr12 135181680 135181737 -8604718 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 3048 131 37 50 chr12 135181737 135182138 -8604317 + L1MB2 LINE L1 5774 6171 0 1665 237 77 47 chr12 135182240 135182771 -8603684 + MLT1H LTR MaLR 3 549 0 285 303 124 6 chr12 135183207 135183385 -8603070 - L2 LINE L2 -493 2821 2623 793 158 0 50 chr12 135184675 135184814 -8601641 + FLAM_C SINE Alu 1 132 -1 664 217 45 0 chr12 135184971 135185128 -8601327 + MER20 DNA MER1_type 1 164 -55 266 267 27 0 chr12 135185418 135185493 -8600962 - MIR SINE MIR -78 184 108 291 331 58 0 chr12 135185565 135185686 -8600769 + MIR SINE MIR 73 200 -62 519 340 37 0 chr12 135186185 135186400 -8600055 + MIR SINE MIR 22 244 -18 1780 105 0 0 chr12 135186423 135186662 -8599793 + AluSx SINE Alu 61 299 -13 372 337 28 14 chr12 135186815 135187027 -8599428 + MIR SINE MIR 25 242 -20 483 277 8 8 chr12 135187442 135187572 -8598883 + L2 LINE L2 3183 3312 -1 299 264 0 0 chr12 135187583 135187655 -8598800 - MIR SINE MIR -12 250 179 1092 293 55 14 chr12 135187672 135188034 -8598421 - MLT1I LTR MaLR 0 409 33 630 252 0 13 chr12 135188051 135188202 -8598253 - MIR SINE MIR -103 159 11 495 246 25 75 chr12 135188375 135188428 -8598027 + Charlie8 DNA MER1_type 11 65 -265 2005 136 0 0 chr12 135188428 135188722 -8597733 - AluJb SINE Alu -18 294 1 495 246 25 75 chr12 135188722 135188867 -8597588 + Charlie8 DNA MER1_type 65 199 -131 1985 131 0 13 chr12 135189027 135189332 -8597123 + AluSx SINE Alu 1 301 -11 225 324 15 0 chr12 135189500 135189568 -8596887 + Charlie8 DNA MER1_type 1360 1428 -989 250 279 59 52 chr12 135189812 135189948 -8596507 - MIR SINE MIR -50 212 76 710 298 32 20 chr12 135191137 135191385 -8595070 + MIR SINE MIR 4 254 -8 2266 109 0 0 chr12 135191468 135191780 -8594675 - AluSx SINE Alu 0 312 1 1715 131 36 0 chr12 135192941 135193048 -8593407 + AluJo SINE Alu 13 115 -197 351 0 0 0 chr12 135193048 135193087 -8593368 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1715 131 36 0 chr12 135193087 135193254 -8593201 + AluJo SINE Alu 115 297 -15 2234 110 0 0 chr12 135193255 135193565 -8592890 + AluSg SINE Alu 1 310 0 340 318 137 19 chr12 135193591 135193768 -8592687 + L2 LINE L2 2412 2567 -747 216 0 0 0 chr12 135193768 135193792 -8592663 + (CCA)n Simple_repeat Simple_repeat 1 24 0 340 318 137 19 chr12 135193792 135193935 -8592520 + L2 LINE L2 2567 2770 -544 3370 184 82 76 chr12 135193991 135194245 -8592210 + MER21B LTR ERV1 1 252 -611 1706 110 4 33 chr12 135194245 135194518 -8591937 + L1MA1 LINE L1 6037 6301 -1 3370 184 82 76 chr12 135194518 135195120 -8591335 + MER21B LTR ERV1 252 862 -1 267 302 65 78 chr12 135195128 135195512 -8590943 + L2 LINE L2 2859 3237 -76 1945 113 65 0 chr12 135195538 135195831 -8590624 - AluSx SINE Alu 0 312 1 265 196 0 0 chr12 135196027 135196073 -8590382 + LTR16A1 LTR ERVL 409 454 -3 216 280 0 0 chr12 135196095 135196145 -8590310 + L2 LINE L2 3264 3313 0 231 286 18 0 chr12 135196183 135196239 -8590216 + L2 LINE L2 3248 3304 -9 1686 112 85 0 chr12 135196301 135196611 -8589844 - AluSg SINE Alu 0 332 1 246 194 56 14 chr12 135196691 135196763 -8589692 - MIR SINE MIR -87 121 47 336 285 8 11 chr12 135197555 135197677 -8588778 - MIR SINE MIR -22 186 62 285 327 112 9 chr12 135197671 135197778 -8588677 + L2 LINE L2 3152 3269 -3 * 434 33 17 0 chr12 135198648 135198708 -8587747 + (CA)n Simple_repeat Simple_repeat 2 62 0 1850 125 36 20 chr12 135198721 135199026 -8587429 + AluJb SINE Alu 1 310 -2 1114 249 136 14 chr12 135199376 135199729 -8586726 + Charlie2 DNA MER1_type 1873 2268 -594 1661 246 72 82 chr12 135199730 135199989 -8586466 + L1ME1 LINE L1 5425 5685 -481 2151 152 16 27 chr12 135199989 135200357 -8586098 + THE1B LTR MaLR 1 364 0 1661 246 72 82 chr12 135200357 135200655 -8585800 + L1ME1 LINE L1 5685 5976 -190 1786 158 13 3 chr12 135200655 135200953 -8585502 + AluJo SINE Alu 1 301 -11 1661 246 72 82 chr12 135200953 135201093 -8585362 + L1ME1 LINE L1 5976 6116 -50 1185 155 136 109 chr12 135201253 135201591 -8584864 + MLT1B LTR MaLR 1 351 -39 1770 143 10 10 chr12 135201591 135201885 -8584570 - AluJb SINE Alu -18 294 1 1185 155 136 109 chr12 135201885 135201914 -8584541 + MLT1B LTR MaLR 351 378 -12 1010 243 78 27 chr12 135201896 135202308 -8584147 + Charlie2 DNA MER1_type 2346 2778 -84 * 208 150 100 0 chr12 135203905 135203945 -8582510 - MIR SINE MIR -55 153 110 1748 135 24 10 chr12 135204059 135204355 -8582100 - AluJo SINE Alu -12 300 1 219 69 0 0 chr12 135205206 135205235 -8581220 + (TCC)n Simple_repeat Simple_repeat 2 30 0 412 318 106 0 chr12 135205323 135205474 -8580981 + MER91A DNA MER1_type 2 168 -28 560 213 45 109 chr12 135206710 135206912 -8579543 - MER53 DNA DNA 0 189 1 189 0 0 0 chr12 135206994 135207015 -8579440 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2261 81 3 10 chr12 135207018 135207314 -8579141 - AluSx SINE Alu -18 294 1 398 311 40 13 chr12 135207333 135207484 -8578971 - MER5A DNA MER1_type 0 189 35 280 343 48 14 chr12 135207357 135207503 -8578952 + MER5A DNA MER1_type 36 186 -3 * 1078 143 0 0 chr12 135208329 135208490 -8577965 - FRAM SINE Alu -16 160 1 2010 105 3 46 chr12 135208594 135208918 -8577537 + AluSg SINE Alu 1 310 0 436 285 128 6 chr12 135210217 135210656 -8575799 + L2 LINE L2 2569 3065 -248 1083 192 65 25 chr12 135210700 135210976 -8575479 + MER33 DNA MER1_type 27 313 -11 246 285 67 83 chr12 135210987 135211180 -8575275 + L2 LINE L2 3122 3311 -2 440 247 0 0 chr12 135211764 135211857 -8574598 + MLT1J2 LTR MaLR 44 136 -314 326 259 46 28 chr12 135211910 135212018 -8574437 + MLT1J1 LTR MaLR 266 375 -71 230 29 59 0 chr12 135212097 135212131 -8574324 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 835 190 186 12 chr12 135212600 135212842 -8573613 + LTR64 LTR ERVK 275 558 0 1387 107 49 21 chr12 135212988 135213231 -8573224 + Tigger7 DNA MER2_type 2229 2478 -9 1085 254 70 85 chr12 135213362 135213878 -8572577 + MLT1J LTR MaLR 4 511 0 275 271 135 0 chr12 135213884 135213980 -8572475 + L1ME LINE L1 5620 5728 -393 1552 202 23 0 chr12 135214186 135214528 -8571927 + L1MC3 LINE L1 7173 7522 -263 409 271 8 53 chr12 135214530 135214663 -8571792 + MLT1D LTR MaLR 50 176 -329 * 496 238 25 0 chr12 135214630 135214752 -8571703 + MLT1D LTR MaLR 85 209 -296 21 36 0 0 chr12 135214804 135214832 -8571623 + AT_rich Low_complexity Low_complexity 1 28 0 2267 86 0 0 chr12 135214841 135215132 -8571323 + AluSc SINE Alu 5 295 -14 924 211 96 64 chr12 135215132 135215199 -8571256 + MLT1D LTR MaLR 184 247 -258 1803 144 0 14 chr12 135215199 135215508 -8570947 + AluJo SINE Alu 1 305 0 924 211 96 64 chr12 135215508 135215751 -8570704 + MLT1D LTR MaLR 247 505 0 717 240 93 32 chr12 135215842 135215912 -8570543 + MIR SINE MIR 2 66 -196 2729 198 37 6 chr12 135215912 135216457 -8569998 + MER68 LTR ERV1 1 562 0 717 240 93 32 chr12 135216457 135216632 -8569823 + MIR SINE MIR 66 262 0 2263 68 14 0 chr12 135216781 135217073 -8569382 + AluSq SINE Alu 1 296 -17 2036 114 37 0 chr12 135217557 135217856 -8568599 + AluSx SINE Alu 1 310 -2 461 297 7 7 chr12 135217868 135218006 -8568449 + Charlie8 DNA MER1_type 97 234 -2183 3079 179 40 74 chr12 135218450 135218518 -8567937 + L1MB8 LINE L1 5489 5558 -626 2559 33 3 0 chr12 135218518 135218823 -8567632 + AluY SINE Alu 1 306 -5 3079 179 40 74 chr12 135218823 135219474 -8566981 + L1MB8 LINE L1 5558 6184 0 1059 16 0 0 chr12 135219503 135219626 -8566829 - AluY SINE Alu -9 302 180 2101 108 3 0 chr12 135219754 135220074 -8566381 + AluSp SINE Alu 1 313 0 702 260 53 40 chr12 135220769 135221069 -8565386 - MER113 DNA MER1_type? -82 439 136 1752 133 83 0 chr12 135221078 135221356 -8565099 - AluSx SINE Alu -11 301 1 808 177 0 0 chr12 135221371 135221495 -8564960 - AluJb SINE Alu -188 124 1 2501 197 51 4 chr12 135221938 135222431 -8564024 + MER68 LTR ERV1 1 516 -46 3076 167 50 82 chr12 135222980 135223234 -8563221 + L1MA8 LINE L1 5557 5818 -473 2090 126 0 0 chr12 135223234 135223536 -8562919 + AluSx SINE Alu 1 302 -10 3076 167 50 82 chr12 135223536 135223666 -8562789 + L1MA8 LINE L1 5818 5951 -340 2227 99 0 3 chr12 135223666 135223970 -8562485 + AluSq SINE Alu 1 303 -10 3076 167 50 82 chr12 135223970 135224340 -8562115 + L1MA8 LINE L1 5951 6288 -3 1935 144 0 7 chr12 135224348 135224646 -8561809 + AluJb SINE Alu 1 296 -16 1714 168 31 0 chr12 135226031 135226317 -8560138 + AluJb SINE Alu 1 295 -17 1177 169 49 4 chr12 135226341 135226566 -8559889 + L1MB5 LINE L1 5932 6166 -8 216 0 0 0 chr12 135226570 135226594 -8559861 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1819 110 11 33 chr12 135226606 135226878 -8559577 + AluSx SINE Alu 1 266 -46 540 154 0 0 chr12 135226882 135226973 -8559482 + AluSg/x SINE Alu 211 301 -8 2197 97 7 0 chr12 135226974 135227273 -8559182 + AluSp SINE Alu 1 301 -12 349 316 63 60 chr12 135228058 135228402 -8558053 + L1ME3A LINE L1 5725 6103 -67 1716 145 42 3 chr12 135228402 135228691 -8557764 + AluJb SINE Alu 1 300 -12 349 316 63 60 chr12 135228691 135228759 -8557696 + L1ME3A LINE L1 6103 6169 -1 1067 179 8 79 chr12 135228762 135229002 -8557453 + AluJb SINE Alu 87 309 -3 1037 285 106 16 chr12 135229178 135229613 -8556842 + MLT1K LTR MaLR 1 474 -2 767 321 51 62 chr12 135230042 135230637 -8555818 - L2 LINE L2 -14 3299 2708 1606 163 10 31 chr12 135230637 135230931 -8555524 - AluJo SINE Alu -24 288 1 767 321 51 62 chr12 135230931 135230961 -8555494 - L2 LINE L2 -605 2708 2679 815 245 5 0 chr12 135230971 135231159 -8555296 + MER3 DNA MER1_type 13 201 -8 225 361 50 27 chr12 135231161 135231421 -8555034 - L2 LINE L2 -634 2680 2415 1267 230 45 52 chr12 135231575 135231674 -8554781 + MLT1D LTR MaLR 31 129 -376 1660 169 0 26 chr12 135231674 135231976 -8554479 + AluJb SINE Alu 1 294 -18 2152 117 0 7 chr12 135231978 135232285 -8554170 + AluSx SINE Alu 1 305 -7 1267 230 45 52 chr12 135232285 135232648 -8553807 + MLT1D LTR MaLR 130 493 -12 463 289 102 62 chr12 135233043 135233235 -8553220 + L2 LINE L2 2518 2701 -612 940 110 0 0 chr12 135233235 135233362 -8553093 + FLAM_C SINE Alu 1 127 -6 463 289 102 62 chr12 135233362 135233738 -8552717 + L2 LINE L2 2701 3106 -207 917 218 84 20 chr12 135233778 135234076 -8552379 + MER33 DNA MER1_type 6 322 -2 899 245 70 11 chr12 135234077 135234350 -8552105 + L1MC4 LINE L1 7739 8027 -15 851 159 0 8 chr12 135234365 135234497 -8551958 + FLAM_C SINE Alu 2 132 -1 182 219 0 24 chr12 135235553 135235594 -8550861 + MIR SINE MIR 105 144 -118 369 340 26 52 chr12 135236102 135236296 -8550159 + L1MC4a LINE L1 5872 6060 -1748 1938 130 7 7 chr12 135236334 135236635 -8549820 - AluSq SINE Alu -12 301 1 690 279 51 35 chr12 135237324 135237636 -8548819 + MLT1I LTR MaLR 86 402 -7 189 349 85 0 chr12 135237910 135238016 -8548439 + MIR SINE MIR 148 262 0 496 260 30 12 chr12 135238093 135238262 -8548193 + MLT1J LTR MaLR 6 177 -334 583 221 31 67 chr12 135238350 135238545 -8547910 + MLT1J LTR MaLR 232 419 -92 450 234 47 8 chr12 135239023 135239151 -8547304 + MLT1K LTR MaLR 440 572 -16 346 393 7 7 chr12 135240414 135240559 -8545896 + MIR SINE MIR 117 261 -1 330 325 241 12 chr12 135240593 135240645 -8545810 + L2 LINE L2 2659 2698 -615 2156 101 7 0 chr12 135240645 135240942 -8545513 + AluSx SINE Alu 1 299 -13 330 325 241 12 chr12 135240942 135241417 -8545038 + L2 LINE L2 2698 3313 0 440 286 0 0 chr12 135241435 135241526 -8544929 + L2 LINE L2 3221 3311 -2 330 284 32 11 chr12 135241835 135241930 -8544525 - MIR SINE MIR -82 180 84 828 157 0 0 chr12 135242082 135242229 -8544226 + (TG)n Simple_repeat Simple_repeat 2 148 0 960 91 8 0 chr12 135242309 135242441 -8544014 + FLAM_C SINE Alu 11 143 0 364 326 66 10 chr12 135243150 135243346 -8543109 - L2 LINE L2 0 3313 3107 893 134 0 0 chr12 135243395 135243522 -8542933 + AluJ SINE Alu 1 127 -185 1120 134 6 0 chr12 135243523 135243695 -8542760 - AluSg/x SINE Alu -7 303 131 1886 131 19 47 chr12 135243695 135244016 -8542439 - AluSx SINE Alu 0 312 1 1125 158 0 35 chr12 135244016 135244218 -8542237 + AluJ SINE Alu 117 311 -1 185 274 27 27 chr12 135244295 135244368 -8542087 - L2 LINE L2 -290 2982 2910 249 254 56 28 chr12 135244914 135244985 -8541470 + MIR SINE MIR 90 162 -100 812 320 119 28 chr12 135245600 135246105 -8540350 - L2 LINE L2 -1 3312 2770 1766 260 48 10 chr12 135246116 135246697 -8539758 + L1MD3 LINE L1 6684 7286 -709 406 211 42 0 chr12 135246698 135246793 -8539662 + MLT1F1 LTR MaLR 21 119 -448 1145 234 74 58 chr12 135246877 135247163 -8539292 + L1MD3 LINE L1 7544 7824 -171 206 0 0 65 chr12 135247163 135247194 -8539261 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1813 129 18 4 chr12 135247196 135247474 -8538981 - AluJo SINE Alu -30 282 1 1145 234 74 58 chr12 135247474 135247619 -8538836 + L1MD3 LINE L1 7824 7985 -10 1099 214 56 68 chr12 135247757 135248200 -8538255 + MLT1C LTR MaLR 27 464 -3 344 320 69 48 chr12 135248453 135248524 -8537931 + Charlie8 DNA MER1_type 4 72 -269 2313 100 0 6 chr12 135248524 135248835 -8537620 - AluSg SINE Alu -1 309 1 344 320 69 48 chr12 135248835 135248994 -8537461 + Charlie8 DNA MER1_type 72 239 -102 182 333 14 14 chr12 135249130 135249199 -8537256 - L2 LINE L2 -3 3310 3242 256 271 8 49 chr12 135249535 135249657 -8536798 - L2 LINE L2 -213 3059 2943 269 247 0 14 chr12 135249831 135249904 -8536551 - MIR SINE MIR -89 119 48 439 246 214 8 chr12 135250740 135250866 -8535589 + L2 LINE L2 3162 3313 0 239 243 175 10 chr12 135250954 135251057 -8535398 - MIR3 SINE MIR -80 128 9 282 175 0 16 chr12 135251226 135251289 -8535166 - L3 LINE CR1 -103 1474 1413 308 306 169 23 chr12 135251289 135251718 -8534737 + L2 LINE L2 2615 3108 -205 2238 94 0 0 chr12 135251962 135252249 -8534206 - AluSx SINE Alu -24 288 2 1756 132 56 26 chr12 135252716 135253019 -8533436 - AluJo SINE Alu 0 312 1 474 283 35 29 chr12 135253021 135253194 -8533261 + L2 LINE L2 3138 3311 -2 335 388 34 7 chr12 135255547 135255694 -8530761 + L1ME LINE L1 5672 5822 -340 691 222 82 12 chr12 135255842 135256013 -8530442 + MIR SINE MIR 43 225 -37 275 279 154 0 chr12 135256306 135256442 -8530013 + MLT1H LTR MaLR 384 540 -9 239 329 87 11 chr12 135256445 135256576 -8529879 - MIR SINE MIR -50 158 33 186 128 0 0 chr12 135256615 135256654 -8529801 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 421 313 25 25 chr12 135257433 135257593 -8528862 + MIR SINE MIR 18 177 -85 208 333 37 59 chr12 135258480 135258615 -8527840 - L2 LINE L2 -1882 1432 1301 2456 173 134 19 chr12 135259752 135260326 -8526129 + L1MB7 LINE L1 5535 6174 -10 204 338 34 40 chr12 135260719 135260867 -8525588 - MIR SINE MIR -11 251 105 1883 171 0 0 chr12 135260934 135261233 -8525222 - AluJo SINE Alu -12 300 2 294 95 0 0 chr12 135261550 135261592 -8524863 + (CAT)n Simple_repeat Simple_repeat 1 42 0 701 320 39 0 chr12 135261595 135261826 -8524629 - MIR SINE MIR -2 260 21 189 0 0 0 chr12 135262647 135262668 -8523787 + (GGA)n Simple_repeat Simple_repeat 3 23 0 265 362 39 0 chr12 135263629 135263756 -8522699 - MIR SINE MIR -21 241 110 807 292 81 10 chr12 135264935 135265318 -8521137 + L2 LINE L2 2883 3292 -21 275 171 92 66 chr12 135265703 135265779 -8520676 - MIR SINE MIR -77 185 108 240 355 7 7 chr12 135266642 135266783 -8519672 + (CA)n Simple_repeat Simple_repeat 2 142 0 217 316 32 32 chr12 135266812 135266967 -8519488 + (CATG)n Simple_repeat Simple_repeat 3 157 0 * 252 388 0 22 chr12 135266886 135267069 -8519386 + (CA)n Simple_repeat Simple_repeat 1 179 0 265 253 27 0 chr12 135267185 135267260 -8519195 + (CA)n Simple_repeat Simple_repeat 2 78 0 660 297 106 72 chr12 135268974 135269361 -8517094 - L2 LINE L2 -4 3309 2910 338 323 8 30 chr12 135269476 135269609 -8516846 + MIR SINE MIR 28 157 -105 653 300 27 34 chr12 135269687 135269950 -8516505 - MIR SINE MIR -1 261 1 284 122 0 0 chr12 135270305 135270346 -8516109 + MIR SINE MIR 109 149 -59 487 295 83 19 chr12 135270666 135270822 -8515633 + MIR SINE MIR 17 182 -80 370 372 21 0 chr12 135271556 135271701 -8514754 + MIR SINE MIR 48 195 -67 653 284 62 24 chr12 135271787 135271998 -8514457 + MIR SINE MIR 24 242 -20 588 211 3 0 chr12 135271999 135272680 -8513775 + (CAT)n Simple_repeat Simple_repeat 1 683 0 223 341 32 41 chr12 135272680 135272803 -8513652 - MIR SINE MIR -55 207 86 432 300 58 21 chr12 135273256 135273446 -8513009 + MIR SINE MIR 46 242 -20 2543 182 85 60 chr12 135273449 135273546 -8512909 + L1MB5 LINE L1 5418 5511 -663 1952 153 0 0 chr12 135273546 135273847 -8512608 + AluJb SINE Alu 1 301 -11 2543 182 85 60 chr12 135273847 135274487 -8511968 + L1MB5 LINE L1 5511 6174 0 192 264 0 0 chr12 135274871 135274924 -8511531 + L2 LINE L2 3002 3054 -218 241 241 139 0 chr12 135275070 135275149 -8511306 - L2 LINE L2 -4 3309 3220 1833 135 21 3 chr12 135275240 135275529 -8510926 - AluJo SINE Alu -18 294 1 712 193 15 89 chr12 135275529 135275731 -8510724 - MER58A DNA MER1_type -10 214 28 279 303 41 41 chr12 135275749 135275871 -8510584 - L2 LINE L2 -223 3090 2969 311 279 106 0 chr12 135276040 135276144 -8510311 - MIR SINE MIR -119 143 29 * 359 326 75 0 chr12 135276139 135276286 -8510169 - MIR SINE MIR -97 165 8 604 195 144 17 chr12 135276286 135276460 -8509995 - MER3 DNA MER1_type -1 208 13 3340 68 36 22 chr12 135276857 135277301 -8509154 + MLT2A2 LTR ERVL 1 450 -3 946 117 12 29 chr12 135277314 135277485 -8508970 + THE1B LTR MaLR 197 364 0 305 407 74 12 chr12 135277831 135278074 -8508381 + L1ME4a LINE L1 5853 6110 -11 684 218 114 26 chr12 135278237 135278430 -8508025 + MIR SINE MIR 47 256 -6 1133 190 27 14 chr12 135279120 135279341 -8507114 - MER58A DNA MER1_type 0 224 1 203 328 0 0 chr12 135279342 135279400 -8507055 - MIR SINE MIR -47 215 158 300 114 0 5 chr12 135280412 135280467 -8505988 + L1MB5 LINE L1 5742 5794 -377 696 100 10 0 chr12 135280488 135280588 -8505867 + FLAM_C SINE Alu 42 142 -1 1443 214 23 20 chr12 135280588 135280774 -8505681 + L1MB5 LINE L1 5823 6012 -162 2750 97 14 3 chr12 135280774 135281145 -8505310 + THE1C LTR MaLR 1 375 0 1443 214 23 20 chr12 135281145 135281308 -8505147 + L1MB5 LINE L1 6012 6173 -1 559 272 137 35 chr12 135281667 135281980 -8504475 + MLT1K LTR MaLR 189 533 -55 315 199 7 27 chr12 135282361 135282507 -8503948 + (CAGAGA)n Simple_repeat Simple_repeat 1 143 0 237 83 0 0 chr12 135282529 135282565 -8503890 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 650 220 6 0 chr12 135282899 135283076 -8503379 + (CA)n Simple_repeat Simple_repeat 1 178 0 519 234 0 0 chr12 135283106 135283251 -8503204 + (CA)n Simple_repeat Simple_repeat 1 145 0 317 247 0 68 chr12 135284459 135284621 -8501834 + G-rich Low_complexity Low_complexity 3 153 0 315 344 0 32 chr12 135284713 135284870 -8501585 + G-rich Low_complexity Low_complexity 3 154 0 1276 268 31 22 chr12 135285164 135285704 -8500751 - L2 LINE L2 -312 3001 2459 290 244 51 0 chr12 135286964 135287042 -8499413 + L2 LINE L2 2894 2975 -338 259 304 196 0 chr12 135287709 135287847 -8498608 + MER5A DNA MER1_type 25 189 0 226 301 80 0 chr12 135287858 135287971 -8498484 - MER117 DNA MER1_type -9 188 67 343 329 174 16 chr12 135288196 135288570 -8497885 + L2 LINE L2 2840 3272 0 412 245 54 75 chr12 135288880 135289019 -8497436 + MLT1C LTR MaLR 59 199 -191 189 107 0 0 chr12 135289019 135289047 -8497408 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 412 245 54 75 chr12 135289047 135289247 -8497208 + MLT1C LTR MaLR 199 390 0 195 326 35 6 chr12 135289355 135289461 -8496994 + MIR SINE MIR 43 150 -63 804 215 47 23 chr12 135291062 135291408 -8495047 + MER31B LTR ERV1 1 466 0 180 0 0 0 chr12 135291507 135291527 -8494928 + (A)n Simple_repeat Simple_repeat 1 20 0 221 164 33 16 chr12 135292010 135292071 -8494384 + MIR SINE MIR 83 144 -118 650 269 45 5 chr12 135292899 135293100 -8493355 - MIR SINE MIR 0 262 54 639 277 221 6 chr12 135293718 135294039 -8492416 + L2 LINE L2 2910 3299 -14 495 0 0 0 chr12 135294042 135294097 -8492358 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 226 258 136 0 chr12 135294565 135294631 -8491824 + MER5C DNA MER1_type 249 323 -1 274 250 130 10 chr12 135294695 135294795 -8491660 + MER58B DNA MER1_type 193 304 -37 618 318 82 5 chr12 135294931 135295151 -8491304 - MIR SINE MIR -24 238 2 354 273 19 0 chr12 135295151 135295267 -8491188 - MIR SINE MIR -87 121 3 528 301 28 0 chr12 135297032 135297175 -8489280 - MIR SINE MIR -24 238 92 235 373 76 6 chr12 135297158 135297316 -8489139 + MIR SINE MIR 80 248 -14 * 184 182 0 0 chr12 135297405 135297438 -8489017 + L2 LINE L2 3263 3295 -18 297 311 9 28 chr12 135297514 135297620 -8488835 + MIR SINE MIR 88 191 -71 195 100 0 0 chr12 135297851 135297881 -8488574 + (CA)n Simple_repeat Simple_repeat 2 31 0 972 254 115 28 chr12 135300368 135300793 -8485662 + MLT1K LTR MaLR 127 588 0 286 267 13 0 chr12 135300967 135301042 -8485413 + MIR SINE MIR 47 122 -86 1081 227 18 10 chr12 135302229 135302720 -8483735 + L1MB7 LINE L1 5570 6098 -86 246 331 176 0 chr12 135303329 135303574 -8482881 - L2 LINE L2 -483 2831 2544 230 300 29 0 chr12 135304135 135304205 -8482250 + L2 LINE L2 3223 3294 -19 273 57 0 0 chr12 135304690 135304725 -8481730 + (CA)n Simple_repeat Simple_repeat 1 35 0 1148 226 38 27 chr12 135305005 135305377 -8481078 - MLT1C LTR MaLR -33 434 59 337 203 162 0 chr12 135305434 135305508 -8480947 + L2 LINE L2 3223 3308 -5 724 292 207 0 chr12 135305874 135306251 -8480204 - L2 LINE L2 -2 3311 2857 239 253 96 0 chr12 135306777 135306860 -8479595 - L2 LINE L2 -2 3311 3221 1260 128 20 4 chr12 135306945 135307408 -8479047 + (TGGA)n Simple_repeat Simple_repeat 1 470 0 2154 224 48 24 chr12 135308041 135308665 -8477790 + L1MB5 LINE L1 5527 6165 -9 327 206 14 14 chr12 135309199 135309272 -8477183 + MIR SINE MIR 53 125 -137 369 233 0 12 chr12 135309793 135309879 -8476576 - MIR3 SINE MIR -46 162 78 189 167 95 0 chr12 135310424 135310466 -8475989 + MIR SINE MIR 76 121 -141 1591 208 13 0 chr12 135310684 135310987 -8475468 + L1MB2 LINE L1 5863 6169 -2 319 303 11 0 chr12 135312883 135312972 -8473483 + MLT1K LTR MaLR 227 316 -272 280 273 136 0 chr12 135313010 135313120 -8473335 + MLT1K LTR MaLR 449 573 -15 703 225 67 0 chr12 135314059 135314237 -8472218 - MIR SINE MIR -63 199 10 348 149 68 27 chr12 135314616 135314690 -8471765 + L2 LINE L2 3195 3271 -1 309 225 14 0 chr12 135314983 135315054 -8471401 + MIR SINE MIR 69 140 -68 988 243 71 51 chr12 135315472 135315537 -8470918 - MLT1C LTR MaLR 0 467 405 1940 118 44 3 chr12 135315537 135315834 -8470621 - AluJb SINE Alu -3 309 1 988 243 71 51 chr12 135315834 135316221 -8470234 - MLT1C LTR MaLR -62 405 6 339 331 116 0 chr12 135317215 135317336 -8469119 + MIR SINE MIR 79 213 -49 227 278 167 0 chr12 135317614 135317686 -8468769 - L2 LINE L2 -13 3259 3176 713 184 54 26 chr12 135317698 135317987 -8468468 + MLT1A1 LTR MaLR 1 328 -37 389 239 80 85 chr12 135318096 135318187 -8468268 - L2 LINE L2 -266 3047 2956 1673 129 107 0 chr12 135318187 135318459 -8467996 + AluSx SINE Alu 1 301 -11 389 239 80 85 chr12 135318459 135318543 -8467912 - L2 LINE L2 -357 2956 2873 1287 122 0 25 chr12 135318819 135319015 -8467440 + AluSg/x SINE Alu 114 304 -8 422 219 24 118 chr12 135319027 135319196 -8467259 - L1MD2 LINE L1 -72 6287 6135 346 254 6 11 chr12 135319213 135319394 -8467061 + (TG)n Simple_repeat Simple_repeat 1 180 0 360 256 51 32 chr12 135319398 135319554 -8466901 - L1MD2 LINE L1 -196 6163 6005 344 280 32 0 chr12 135320268 135320361 -8466094 - MIR SINE MIR -129 133 38 633 242 33 0 chr12 135320513 135320666 -8465789 - MIR SINE MIR -65 197 40 478 261 22 29 chr12 135320695 135320833 -8465622 - MIR SINE MIR -79 183 47 546 16 0 0 chr12 135322707 135322770 -8463685 + (CA)n Simple_repeat Simple_repeat 2 64 0 266 322 102 8 chr12 135322781 135322899 -8463556 + MIR3 SINE MIR 28 156 -52 370 369 37 0 chr12 135323030 135323244 -8463211 - L2 LINE L2 -274 3039 2818 456 265 55 30 chr12 135323383 135323583 -8462872 - MIR SINE MIR -21 241 37 227 226 0 81 chr12 135323832 135323894 -8462561 - MIR SINE MIR -98 164 108 1444 214 68 3 chr12 135325041 135325411 -8461044 + L1MB5 LINE L1 5779 6172 -2 1573 166 8 4 chr12 135325416 135325681 -8460774 + AluSx SINE Alu 44 309 -3 299 273 130 0 chr12 135325783 135325860 -8460595 - L2 LINE L2 -2 3270 3184 702 256 278 15 chr12 135325917 135326316 -8460139 - MLT1D LTR MaLR 0 505 2 1108 109 159 25 chr12 135327183 135327384 -8459071 + MER30 DNA MER1_type 3 230 0 593 311 11 0 chr12 135327384 135327564 -8458891 - MIR SINE MIR -80 182 1 242 219 14 41 chr12 135327833 135327906 -8458549 + Charlie8 DNA MER1_type 103 173 -2244 405 251 121 30 chr12 135328144 135328343 -8458112 + MLT1K LTR MaLR 368 584 -4 257 339 42 8 chr12 135328506 135328624 -8457831 + L2 LINE L2 3142 3263 -9 375 358 89 12 chr12 135328833 135329157 -8457298 + L2 LINE L2 2905 3253 -60 677 286 35 25 chr12 135329396 135329595 -8456860 + MIR SINE MIR 16 216 -46 370 304 27 0 chr12 135330455 135330567 -8455888 + MIR SINE MIR 52 166 -96 618 216 87 60 chr12 135330897 135331053 -8455402 + MIR SINE MIR 20 183 -79 2237 97 0 16 chr12 135331053 135331362 -8455093 - AluSx SINE Alu -8 304 1 618 216 87 60 chr12 135331362 135331390 -8455065 + MIR SINE MIR 183 209 -53 318 200 0 15 chr12 135332474 135332539 -8453916 + MIR SINE MIR 97 160 -102 2379 73 3 0 chr12 135332539 135332842 -8453613 + AluSp SINE Alu 3 306 -7 1960 105 3 27 chr12 135332849 135333143 -8453312 + AluSx SINE Alu 26 312 0 2285 209 67 35 chr12 135333422 135334107 -8452348 + L1ME1 LINE L1 5457 6163 -3 332 333 46 88 chr12 135334247 135334487 -8451968 + MIR SINE MIR 24 253 -9 262 266 0 16 chr12 135335120 135335184 -8451271 + GA-rich Low_complexity Low_complexity 2 64 0 521 240 189 23 chr12 135335636 135335812 -8450643 + MIR SINE MIR 21 218 -11 278 219 12 27 chr12 135336495 135336760 -8449695 + C-rich Low_complexity Low_complexity 1 260 0 945 288 50 35 chr12 135336992 135337395 -8449060 + L2 LINE L2 2905 3313 0 1132 232 42 62 chr12 135337399 135337541 -8448914 - MER7A DNA MER2_type -2693 345 202 1419 101 106 0 chr12 135337541 135337749 -8448706 - MER30 DNA MER1_type 0 230 1 1132 232 42 62 chr12 135337749 135337878 -8448577 - MER7A DNA MER2_type -2836 202 82 2216 92 3 0 chr12 135337878 135338171 -8448284 + AluSx SINE Alu 3 296 -16 1132 232 42 62 chr12 135338171 135338252 -8448203 - MER7A DNA MER2_type -2956 82 1 389 261 101 37 chr12 135338418 135338587 -8447868 + MIR SINE MIR 33 210 -52 409 288 90 34 chr12 135338622 135338799 -8447656 - MIR SINE MIR -35 227 41 489 301 48 0 chr12 135339444 135339590 -8446865 - MIR SINE MIR -79 183 31 1776 142 55 3 chr12 135339792 135340081 -8446374 - AluJb SINE Alu -8 304 1 2073 250 61 6 chr12 135340134 135340790 -8445665 + L1ME1 LINE L1 5254 5945 -221 635 293 1 32 chr12 135341124 135341314 -8445141 + MIR SINE MIR 7 190 -65 229 309 95 8 chr12 135342569 135342695 -8443760 - MIR SINE MIR -79 183 47 412 329 42 0 chr12 135343928 135344165 -8442290 - L2 LINE L2 -208 3064 2818 189 228 16 8 chr12 135344174 135344301 -8442154 + G-rich Low_complexity Low_complexity 5 132 0 325 202 27 21 chr12 135344356 135344947 -8441508 + G-rich Low_complexity Low_complexity 1 594 0 252 176 15 30 chr12 135344979 135345110 -8441345 + G-rich Low_complexity Low_complexity 6 134 0 213 217 9 19 chr12 135345142 135345248 -8441207 + G-rich Low_complexity Low_complexity 6 110 0 362 204 38 6 chr12 135345307 135345659 -8440796 + G-rich Low_complexity Low_complexity 1 363 0 2209 94 14 10 chr12 135345982 135346279 -8440176 - AluSx SINE Alu -14 298 1 2237 124 0 0 chr12 135346630 135346936 -8439519 - AluSx SINE Alu -4 308 3 324 338 22 29 chr12 135346942 135347078 -8439377 - L2 LINE L2 -16 3256 3122 715 274 29 6 chr12 135347240 135347415 -8439040 - MIR SINE MIR -56 206 28 1114 242 76 60 chr12 135347488 135347856 -8438599 + MLT1A2 LTR MaLR 1 374 0 199 269 0 0 chr12 135348698 135348750 -8437705 + MIR SINE MIR 16 67 -195 923 269 59 32 chr12 135348819 135349061 -8437394 + LTR33 LTR ERVL 34 268 -253 1948 139 0 7 chr12 135349061 135349363 -8437092 - AluJo SINE Alu -12 300 1 923 269 59 32 chr12 135349363 135349384 -8437071 + LTR33 LTR ERVL 268 287 -234 2100 208 73 27 chr12 135349384 135349866 -8436589 - MLT1D LTR MaLR 0 505 2 923 269 59 32 chr12 135349866 135350076 -8436379 + LTR33 LTR ERVL 287 521 0 207 303 61 61 chr12 135350076 135350175 -8436280 + MIR SINE MIR 145 243 -19 295 255 81 40 chr12 135350303 135350452 -8436003 - L2 LINE L2 0 3313 3159 295 324 34 47 chr12 135350480 135350628 -8435827 - L2 LINE L2 -14 3299 3154 3365 181 16 33 chr12 135350708 135351320 -8435135 + MER77 LTR ERV1 4 605 0 854 169 0 0 chr12 135351345 135351475 -8434980 - AluJb SINE Alu -25 287 158 219 191 0 0 chr12 135401764 135401806 -8384649 + MIR SINE MIR 103 144 -118 648 267 71 29 chr12 135402026 135402266 -8384189 - MIR SINE MIR -1 261 12 710 234 6 6 chr12 135402422 135402580 -8383875 - FRAM SINE Alu -21 155 1 271 286 11 11 chr12 135402710 135402801 -8383654 + Charlie8 DNA MER1_type 79 169 -2248 238 172 0 0 chr12 135402804 135402851 -8383604 + MIR SINE MIR 99 145 -63 248 366 0 0 chr12 135403168 135403269 -8383186 - MIR SINE MIR -72 136 36 289 218 154 36 chr12 135403479 135403589 -8382866 - L2 LINE L2 -211 3061 2939 261 267 172 33 chr12 135403654 135403834 -8382621 - L2 LINE L2 -2 3311 3107 321 280 0 20 chr12 135404872 135404972 -8381483 + Charlie8 DNA MER1_type 78 175 -2242 181 156 0 0 chr12 135404980 135405012 -8381443 + MIR SINE MIR 113 144 -118 1077 241 52 68 chr12 135405100 135405329 -8381126 - L2 LINE L2 -17 3296 3065 2344 95 3 3 chr12 135405329 135405633 -8380822 - AluSq SINE Alu -9 304 1 1077 241 52 68 chr12 135405633 135406063 -8380392 - L2 LINE L2 -248 3065 2571 222 118 0 0 chr12 135407289 135407323 -8379132 + (A)n Simple_repeat Simple_repeat 1 34 0 180 182 52 0 chr12 135408802 135408879 -8377576 + (ATGGTG)n Simple_repeat Simple_repeat 3 83 0 1090 194 70 0 chr12 135409238 135409465 -8376990 + MIR SINE MIR 8 250 -12 295 273 11 11 chr12 135409540 135409628 -8376827 - LTR16C LTR ERVL -160 331 244 180 299 65 0 chr12 135409783 135409860 -8376595 - MIR SINE MIR -1 261 180 245 202 130 33 chr12 135409972 135410117 -8376338 - MIR SINE MIR -62 146 9 511 280 7 20 chr12 135410186 135410336 -8376119 + MIR SINE MIR 88 235 -27 1042 287 136 0 chr12 135410811 135411156 -8375299 + MLT1J2 LTR MaLR 41 432 -18 725 241 47 0 chr12 135411268 135411438 -8375017 + MER45A DNA AcHobo 1 178 0 1670 213 32 0 chr12 135412828 135413199 -8373256 + L1MB5 LINE L1 5784 6166 -8 235 250 0 0 chr12 135413371 135413423 -8373032 + MIR3 SINE MIR 111 162 -46 706 173 5 146 chr12 135413458 135413566 -8372889 - MER3 DNA MER1_type -3 206 143 1780 164 65 0 chr12 135413566 135413933 -8372522 + L1MB3 LINE L1 5793 6183 0 706 173 5 146 chr12 135413933 135414044 -8372411 - MER3 DNA MER1_type -66 143 18 258 258 216 10 chr12 135414104 135414201 -8372254 + L2 LINE L2 3192 3308 -5 667 268 76 18 chr12 135414210 135414434 -8372021 - Charlie8 DNA MER1_type -2176 241 5 3662 81 27 37 chr12 135414743 135415277 -8371178 + MER4A-int LTR ERV1 6013 6542 -56 2552 62 13 0 chr12 135415277 135415584 -8370871 - AluY SINE Alu 0 311 1 3662 81 27 37 chr12 135415584 135415639 -8370816 + MER4A-int LTR ERV1 6542 6596 -2 584 152 0 10 chr12 135415647 135415746 -8370709 + MER4A LTR ERV1 1 98 -566 1438 144 180 79 chr12 135415746 135416113 -8370342 + MER4A LTR ERV1 261 664 0 2238 122 0 10 chr12 135416166 135416460 -8369995 + AluSx SINE Alu 2 292 -20 643 152 19 0 chr12 135416463 135416568 -8369887 + AluSg/x SINE Alu 188 294 -18 660 265 50 17 chr12 135416586 135416824 -8369631 - L2 LINE L2 -803 2511 2266 265 277 71 71 chr12 135417678 135417790 -8368665 + MER5B DNA MER1_type 7 118 -60 866 135 0 81 chr12 135417832 135417902 -8368553 - AluJo SINE Alu -176 136 83 1997 142 3 3 chr12 135417902 135418197 -8368258 + AluSq SINE Alu 1 295 -18 866 135 0 81 chr12 135418197 135418274 -8368181 - AluJo SINE Alu -229 83 1 2446 185 33 6 chr12 135418413 135418931 -8367524 - L1MB5 LINE L1 -6 6168 5637 211 175 0 0 chr12 135418933 135418973 -8367482 - MER5B DNA MER1_type -123 55 16 250 271 171 8 chr12 135419413 135419542 -8366913 - L2 LINE L2 0 3313 3164 1474 294 91 17 chr12 135419622 135420162 -8366293 - MLT1K LTR MaLR -7 581 2 1087 291 51 18 chr12 135420193 135420684 -8365771 + LTR33 LTR ERVL 1 507 -14 1987 155 98 50 chr12 135420719 135421029 -8365426 - MLT1D LTR MaLR -4 501 159 2375 98 0 0 chr12 135421029 135421326 -8365129 - AluSx SINE Alu -9 303 7 1987 155 98 50 chr12 135421326 135421493 -8364962 - MLT1D LTR MaLR -346 159 1 1398 215 8 67 chr12 135421590 135421976 -8364479 - MLT1A2 LTR MaLR -11 363 1 2053 130 0 23 chr12 135422936 135423244 -8363211 - AluJb SINE Alu -11 301 1 499 304 145 32 chr12 135423274 135423715 -8362740 + L1MC4a LINE L1 5579 6069 -1739 35 41 0 0 chr12 135423759 135423808 -8362647 + AT_rich Low_complexity Low_complexity 1 49 0 304 276 55 16 chr12 135424041 135424168 -8362287 + L2 LINE L2 2970 3101 -171 296 288 67 75 chr12 135424224 135424491 -8361964 + ORSL DNA AcHobo 1 265 -10 1145 274 147 7 chr12 135424603 135425212 -8361243 - L2 LINE L2 -3 3310 2615 339 309 12 77 chr12 135425695 135425863 -8360592 + L1MC4a LINE L1 5889 6045 -1763 364 320 19 0 chr12 135425866 135425969 -8360486 + MIR SINE MIR 154 258 -4 1183 121 11 0 chr12 135426845 135427027 -8359428 - L1MB5 LINE L1 0 6174 5991 420 203 0 0 chr12 135427027 135427106 -8359349 - L1M4 LINE L1 -478 5696 5618 216 0 0 0 chr12 135427112 135427136 -8359319 + (A)n Simple_repeat Simple_repeat 1 24 0 261 294 31 21 chr12 135427515 135427655 -8358800 + MIR SINE MIR 143 248 -14 247 293 28 28 chr12 135427681 135427787 -8358668 + MIR SINE MIR 143 248 -14 201 242 45 0 chr12 135427787 135427853 -8358602 + MIR SINE MIR 180 248 -14 246 302 28 28 chr12 135427879 135427985 -8358470 + MIR SINE MIR 143 248 -14 233 227 45 0 chr12 135427985 135428051 -8358404 + MIR SINE MIR 180 248 -14 246 302 28 28 chr12 135428077 135428183 -8358272 + MIR SINE MIR 143 248 -14 246 302 28 28 chr12 135428342 135428448 -8358007 + MIR SINE MIR 143 248 -14 209 270 40 0 chr12 135428448 135428522 -8357933 + MIR SINE MIR 180 256 -6 406 178 40 92 chr12 135428577 135428729 -8357726 + LTR41 LTR ERVL 598 741 -32 191 354 0 0 chr12 135429415 135429480 -8356975 - L2 LINE L2 -28 3285 3221 491 294 104 26 chr12 135429632 135429835 -8356620 - MLT1K LTR MaLR -9 579 359 1315 235 81 63 chr12 135429835 135430348 -8356107 + MLT1E LTR MaLR 3 580 -6 943 297 14 24 chr12 135430351 135430641 -8355814 - MLT1K LTR MaLR -253 335 49 859 287 12 20 chr12 135430792 135431046 -8355409 - MIR SINE MIR -8 254 3 1699 201 71 57 chr12 135432204 135432283 -8354172 + MLT1D LTR MaLR 1 77 -428 1094 193 110 56 chr12 135432283 135432692 -8353763 + MSTB1 LTR MaLR 1 431 -1 1699 201 71 57 chr12 135432692 135433104 -8353351 + MLT1D LTR MaLR 77 499 -6 286 251 91 70 chr12 135433293 135433492 -8352963 + MLT1J LTR MaLR 226 428 -83 2403 96 0 34 chr12 135435439 135435761 -8350694 - AluY SINE Alu 0 311 1 200 294 118 39 chr12 135436016 135436169 -8350286 + MIR SINE MIR 63 227 -35 180 105 158 0 chr12 135437151 135437189 -8349266 + MIR SINE MIR 90 133 -75 265 346 88 0 chr12 135437266 135437402 -8349053 - L2 LINE L2 -3 3269 3122 186 107 0 0 chr12 135437674 135437702 -8348753 - MIR SINE MIR -63 145 118 1908 159 0 14 chr12 135437828 135438118 -8348337 + AluJb SINE Alu 15 300 -12 2147 107 24 0 chr12 135438121 135438410 -8348045 + AluSq SINE Alu 1 296 -17 2092 139 3 7 chr12 135438996 135439298 -8347157 + AluSx SINE Alu 2 302 -10 2546 60 0 16 chr12 135439298 135439614 -8346841 + AluY SINE Alu 1 311 0 1795 200 31 3 chr12 135440195 135440585 -8345870 + L1MB7 LINE L1 5765 6165 -19 1956 143 3 28 chr12 135440600 135440887 -8345568 + AluJb SINE Alu 1 280 -32 304 306 19 70 chr12 135441093 135441351 -8345104 + L2 LINE L2 2887 3131 -182 1735 88 4 4 chr12 135441443 135441669 -8344786 - AluSg/x SINE Alu -5 305 80 659 304 57 59 chr12 135442266 135442671 -8343784 - ERVL LTR ERVL -4322 1442 1039 433 297 41 41 chr12 135442896 135443016 -8343439 - ERVL LTR ERVL -4982 672 550 2360 107 0 0 chr12 135443016 135443314 -8343141 - AluSx SINE Alu -14 298 1 433 297 41 41 chr12 135443314 135443412 -8343043 - ERVL LTR ERVL -5103 551 454 304 252 54 95 chr12 135443865 135443950 -8342505 - LTR50 LTR ERVL 0 795 708 1890 135 67 0 chr12 135443950 135444232 -8342223 + AluJo SINE Alu 2 302 -10 2126 133 13 0 chr12 135444240 135444517 -8341938 + AluSx SINE Alu 1 284 -28 303 28 0 0 chr12 135444517 135444553 -8341902 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 133 13 0 chr12 135444553 135444577 -8341878 + AluSx SINE Alu 284 306 -6 304 252 54 95 chr12 135444577 135444668 -8341787 - LTR50 LTR ERVL -94 701 620 2309 113 0 0 chr12 135444668 135444961 -8341494 + AluSg SINE Alu 2 294 -16 304 252 54 95 chr12 135444961 135445016 -8341439 - LTR50 LTR ERVL -175 620 564 583 227 0 14 chr12 135445498 135445639 -8340816 - LTR41 LTR ERVL -634 139 1 2589 51 0 0 chr12 135445805 135446101 -8340354 + AluY SINE Alu 1 296 -15 1817 185 3 7 chr12 135446368 135446665 -8339790 - AluJo SINE Alu -16 296 1 226 275 29 14 chr12 135446701 135446770 -8339685 + MIR SINE MIR 83 152 -110 273 277 96 11 chr12 135447046 135447140 -8339315 - MLT1J LTR MaLR -174 337 236 467 219 10 0 chr12 135447175 135447271 -8339184 - MLT1E3 LTR MaLR -261 363 267 1237 295 43 11 chr12 135447769 135448288 -8338167 - L2 LINE L2 -2 3311 2774 1857 158 20 3 chr12 135448333 135448625 -8337830 + AluJo SINE Alu 1 297 -15 547 212 26 83 chr12 135448643 135448836 -8337619 + L2 LINE L2 3124 3305 -8 2065 193 118 30 chr12 135448837 135449407 -8337048 - MLT1E3 LTR MaLR 0 624 5 803 324 76 26 chr12 135449578 135449958 -8336497 + L2 LINE L2 2915 3313 0 583 195 1 13 chr12 135450365 135450498 -8335957 + MIR SINE MIR 20 148 -62 664 242 106 20 chr12 135451081 135451279 -8335176 + MER58C DNA MER1_type 1 215 0 669 304 18 14 chr12 135451410 135451627 -8334828 - MIR SINE MIR -25 237 20 1336 237 98 15 chr12 135452551 135453023 -8333432 + MLT1J LTR MaLR 1 511 0 444 280 20 9 chr12 135453086 135453238 -8333217 + MLT1H LTR MaLR 29 190 -321 318 218 106 21 chr12 135453367 135453522 -8332933 + MLT1G1 LTR MaLR 267 579 0 527 245 92 25 chr12 135454875 135455071 -8331384 + MIR SINE MIR 12 220 -42 707 245 0 0 chr12 135455209 135455352 -8331103 + FRAM SINE Alu 1 139 -37 213 39 0 0 chr12 135455352 135455378 -8331077 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1945 121 4 11 chr12 135455383 135455675 -8330780 + AluSx SINE Alu 32 312 0 772 235 20 20 chr12 135455711 135455911 -8330544 + MLT1K LTR MaLR 75 274 -314 297 171 114 0 chr12 135455924 135455994 -8330461 + MLT1K LTR MaLR 447 524 -64 2358 103 3 0 chr12 135456532 135456833 -8329622 + AluSq SINE Alu 1 302 -11 566 237 113 64 chr12 135457674 135457687 -8328768 - MIR SINE MIR 0 262 251 2362 64 4 0 chr12 135457687 135458001 -8328454 + AluSc SINE Alu 1 315 0 566 237 113 64 chr12 135458001 135458239 -8328216 - MIR SINE MIR -11 251 2 529 349 93 17 chr12 135458275 135458619 -8327836 + LTR67 LTR ERVL 185 554 -3 473 233 0 6 chr12 135459071 135459251 -8327204 + GA-rich Low_complexity Low_complexity 2 180 0 999 65 0 0 chr12 135459297 135459420 -8327035 + AluY SINE Alu 188 310 -1 313 198 18 0 chr12 135459439 135459550 -8326905 + GA-rich Low_complexity Low_complexity 1 113 0 292 237 26 52 chr12 135459762 135459877 -8326578 + L1ME LINE L1 5724 5835 -286 1503 229 28 0 chr12 135459920 135460247 -8326208 - MLT1A1 LTR MaLR 0 365 30 206 213 21 0 chr12 135460734 135460781 -8325674 - MIR SINE MIR -61 147 100 399 281 196 18 chr12 135460845 135461069 -8325386 + MLT1K LTR MaLR 15 278 -310 331 294 24 16 chr12 135461120 135461246 -8325209 - LTR16B LTR ERVL -18 446 320 40 21 0 0 chr12 135461270 135461317 -8325138 + AT_rich Low_complexity Low_complexity 1 47 0 2282 214 50 78 chr12 135462205 135462590 -8323865 + L1MC4 LINE L1 7317 7672 -370 2517 57 3 0 chr12 135462590 135462891 -8323564 - AluY SINE Alu -9 302 1 2282 214 50 78 chr12 135462891 135463252 -8323203 + L1MC4 LINE L1 7672 8042 0 479 223 71 87 chr12 135463265 135463507 -8322948 + MLT1L LTR MaLR 96 394 -193 392 257 114 21 chr12 135463642 135463782 -8322673 - MLT1I LTR MaLR -140 269 117 392 267 6 33 chr12 135463881 135463935 -8322520 + MER5B DNA MER1_type 38 92 -97 1635 138 0 4 chr12 135463935 135464174 -8322281 + AluSx SINE Alu 60 297 -15 392 267 6 33 chr12 135464174 135464224 -8322231 + MER5B DNA MER1_type 92 155 -34 1851 175 10 23 chr12 135464276 135464665 -8321790 - L1MB4 LINE L1 -1 6179 5796 405 163 0 0 chr12 135464688 135464768 -8321687 + L1MB7 LINE L1 5769 5848 -336 * 1674 200 10 1 chr12 135464729 135465078 -8321377 - L1PA5 LINE L1 -310 5844 5487 370 203 0 0 chr12 135465080 135465159 -8321296 - L1ME3 LINE L1 -70 6092 6014 549 233 147 6 chr12 135466187 135466350 -8320105 + MIR SINE MIR 77 262 0 387 287 87 13 chr12 135466818 135466968 -8319487 + MIR SINE MIR 4 164 -98 245 309 25 0 chr12 135467338 135467419 -8319036 + MIR SINE MIR 141 223 -39 390 266 154 24 chr12 135467478 135467647 -8318808 - Charlie8 DNA MER1_type -2226 191 1 399 250 97 0 chr12 135467677 135467801 -8318654 - MIR SINE MIR -114 148 13 2076 234 35 13 chr12 135467911 135468454 -8318001 - MLT1H1 LTR MaLR 0 555 1 1685 142 84 10 chr12 135468800 135469110 -8317345 - MER1B DNA MER1_type -4 333 1 757 296 14 0 chr12 135469282 135469505 -8316950 + MLT1K LTR MaLR 61 286 -302 494 229 61 141 chr12 135469555 135469676 -8316779 - MIR SINE MIR 0 262 172 2584 78 0 0 chr12 135469676 135469984 -8316471 - AluSx SINE Alu -4 308 1 494 229 61 141 chr12 135469984 135470124 -8316331 - MIR SINE MIR -90 172 22 739 176 61 24 chr12 135470141 135470306 -8316149 - MER53 DNA DNA -18 171 1 216 139 0 0 chr12 135470309 135470345 -8316110 - MIR SINE MIR -225 37 2 343 158 0 0 chr12 135470672 135470729 -8315726 - MLT1E3 LTR MaLR 0 624 568 1465 281 53 13 chr12 135470910 135471384 -8315071 + MLT1K LTR MaLR 86 578 -10 1984 115 0 112 chr12 135471834 135472182 -8314273 - AluSg SINE Alu -1 309 1 2803 71 88 7 chr12 135472689 135472728 -8313727 - MLT2A1 LTR ERVL 0 444 410 225 83 0 0 chr12 135472728 135472764 -8313691 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2803 71 88 7 chr12 135472764 135473135 -8313320 - MLT2A1 LTR ERVL -34 410 1 1959 144 6 26 chr12 135473728 135474040 -8312415 - AluJb SINE Alu -6 306 1 237 221 0 0 chr12 135474080 135474148 -8312307 + (CA)n Simple_repeat Simple_repeat 1 68 0 241 272 35 70 chr12 135474400 135474600 -8311855 + MLT1J LTR MaLR 1 158 -292 216 67 0 0 chr12 135475197 135475227 -8311228 + (CA)n Simple_repeat Simple_repeat 1 30 0 2118 123 19 26 chr12 135475480 135475789 -8310666 + AluSx SINE Alu 1 307 -5 1863 150 4 4 chr12 135476612 135476892 -8309563 + AluJo SINE Alu 1 280 -32 2068 137 3 23 chr12 135476916 135477223 -8309232 + AluJb SINE Alu 1 301 -11 242 167 33 33 chr12 135477492 135477552 -8308903 + MIR SINE MIR 80 139 -123 1782 82 152 8 chr12 135477567 135477824 -8308631 + AluSg1 SINE Alu 1 294 -15 27 29 0 0 chr12 135481029 135481063 -8305392 + AT_rich Low_complexity Low_complexity 1 34 0 1625 78 0 0 chr12 135481065 135481258 -8305197 + AluSg SINE Alu 1 193 -117 515 165 9 28 chr12 135481234 135481343 -8305112 + AluSg SINE Alu 201 307 -2 1913 161 3 0 chr12 135481450 135481742 -8304713 + AluJo SINE Alu 1 293 -19 249 337 125 40 chr12 135483492 135483821 -8302634 - L1ME LINE L1 -257 5913 5557 2065 123 7 7 chr12 135484767 135485076 -8301379 + AluSx SINE Alu 1 309 -3 909 85 0 0 chr12 135485360 135485478 -8300977 - AluSp/q SINE Alu -20 293 176 918 133 0 14 chr12 135485579 135485722 -8300733 + AluJb SINE Alu 160 300 -12 204 222 0 0 chr12 135485839 135485884 -8300571 + (CA)n Simple_repeat Simple_repeat 2 46 0 2066 129 0 10 chr12 135486042 135486344 -8300111 + AluSx SINE Alu 1 299 -13 362 283 105 20 chr12 135486380 135486635 -8299820 - L1ME4a LINE L1 -222 5899 5699 673 274 50 5 chr12 135486650 135486851 -8299604 - MER82 DNA MER2_type 0 653 444 283 342 38 13 chr12 135486886 135487044 -8299411 + MIR SINE MIR 44 205 -57 334 278 44 0 chr12 135487068 135487158 -8299297 - MER82 DNA MER2_type -559 94 1 1383 169 71 4 chr12 135487988 135488243 -8298212 - AluJo SINE Alu -12 300 29 2133 101 0 29 chr12 135489638 135489945 -8296510 - AluSg SINE Alu -12 298 1 449 339 6 11 chr12 135491277 135491457 -8294998 + (CA)n Simple_repeat Simple_repeat 1 179 0 229 314 0 0 chr12 135491487 135491557 -8294898 + (CA)n Simple_repeat Simple_repeat 1 70 0 2397 146 8 3 chr12 135492536 135492898 -8293557 + THE1B LTR MaLR 1 364 0 674 297 0 36 chr12 135493000 135493222 -8293233 + L1MA9 LINE L1 6068 6281 -31 285 344 71 0 chr12 135493783 135493937 -8292518 + L1MC/D LINE L1 5595 5759 -2049 1845 167 7 0 chr12 135494290 135494595 -8291860 - AluJo SINE Alu -5 307 1 1430 160 35 69 chr12 135494749 135494871 -8291584 + AluJo SINE Alu 6 131 -181 2137 112 0 7 chr12 135494871 135495167 -8291288 - AluSx SINE Alu -16 296 3 1430 160 35 69 chr12 135495167 135495362 -8291093 + AluJo SINE Alu 131 312 0 2229 90 0 3 chr12 135495513 135495812 -8290643 + AluSg SINE Alu 1 298 -12 303 327 36 0 chr12 135497384 135497494 -8288961 - L1MC4a LINE L1 -1905 5903 5790 2106 125 16 70 chr12 135498037 135498379 -8288076 + THE1B LTR MaLR 1 321 -43 2152 108 0 3 chr12 135498379 135498674 -8287781 - AluSc SINE Alu -15 294 1 2106 125 16 70 chr12 135498674 135498716 -8287739 + THE1B LTR MaLR 321 364 0 1882 117 24 3 chr12 135500702 135500822 -8285633 + AluSg SINE Alu 1 117 -193 549 0 0 0 chr12 135500822 135500883 -8285572 + (CA)n Simple_repeat Simple_repeat 2 62 0 1882 117 24 3 chr12 135500883 135501053 -8285402 + AluSg SINE Alu 117 297 -13 1242 283 99 34 chr12 135501095 135501628 -8284827 + L1MC4 LINE L1 7374 7941 -101 1542 153 61 0 chr12 135501660 135501942 -8284513 + AluJo SINE Alu 4 301 0 255 272 126 10 chr12 135501949 135502052 -8284403 + L1MC4 LINE L1 7919 8033 -9 1369 176 3 93 chr12 135502086 135502410 -8284045 + AluSx SINE Alu 11 305 -7 2380 78 7 0 chr12 135502711 135503020 -8283435 + AluY SINE Alu 1 311 0 2248 113 3 0 chr12 135503026 135503337 -8283118 + AluSx SINE Alu 1 312 0 800 337 118 35 chr12 135503811 135504491 -8281964 - ERVL LTR ERVL -4108 1585 811 451 300 40 40 chr12 135504555 135504679 -8281776 - ERVL LTR ERVL -4978 676 550 2222 107 0 0 chr12 135504679 135504977 -8281478 - AluSx SINE Alu -14 298 1 451 300 40 40 chr12 135504977 135505075 -8281380 - ERVL LTR ERVL -5103 551 454 323 254 54 88 chr12 135505528 135505613 -8280842 - LTR50 LTR ERVL 0 795 709 1767 137 67 0 chr12 135505613 135505897 -8280558 + AluJo SINE Alu 2 304 -8 2001 133 13 0 chr12 135505903 135506180 -8280275 + AluSx SINE Alu 1 284 -28 303 28 0 0 chr12 135506180 135506216 -8280239 + (CA)n Simple_repeat Simple_repeat 1 36 0 2001 133 13 0 chr12 135506216 135506240 -8280215 + AluSx SINE Alu 284 306 -6 323 254 54 88 chr12 135506240 135506331 -8280124 - LTR50 LTR ERVL -91 704 619 2178 113 0 0 chr12 135506331 135506624 -8279831 + AluSg SINE Alu 2 294 -16 323 254 54 88 chr12 135506624 135506679 -8279776 - LTR50 LTR ERVL -176 619 564 557 242 7 13 chr12 135507149 135507302 -8279153 - LTR41 LTR ERVL -621 152 1 279 0 0 0 chr12 135507391 135507422 -8279033 + (CA)n Simple_repeat Simple_repeat 2 32 0 1066 129 0 6 chr12 135507422 135507592 -8278863 + AluSg/x SINE Alu 131 299 -13 1242 283 99 34 chr12 135507634 135508167 -8278288 + L1MC4 LINE L1 7374 7941 -101 1558 149 61 0 chr12 135508199 135508481 -8277974 + AluJo SINE Alu 4 301 0 255 272 126 10 chr12 135508488 135508591 -8277864 + L1MC4 LINE L1 7919 8033 -9 1254 179 3 100 chr12 135508625 135508953 -8277502 + AluSx SINE Alu 11 309 0 1040 199 45 44 chr12 135509066 135509400 -8277055 + MLT1B LTR MaLR 1 384 -6 514 228 35 81 chr12 135509485 135509629 -8276826 + MER112 DNA MER1_type 1 129 -131 1751 172 7 7 chr12 135509629 135509932 -8276523 - AluSx SINE Alu -8 304 2 514 228 35 81 chr12 135509932 135510046 -8276409 + MER112 DNA MER1_type 129 247 -13 468 209 65 43 chr12 135512336 135512400 -8274055 - MIR SINE MIR -42 220 159 2303 166 34 12 chr12 135512400 135512817 -8273638 + MSTB LTR MaLR 1 426 0 468 209 65 43 chr12 135512817 135512891 -8273564 - MIR SINE MIR -103 159 79 2548 55 0 0 chr12 135513594 135513905 -8272550 - AluY SINE Alu 0 311 1 305 311 56 19 chr12 135514051 135514212 -8272243 + (CATG)n Simple_repeat Simple_repeat 1 167 0 345 307 140 13 chr12 135514289 135514439 -8272016 + MIR3 SINE MIR 29 197 -11 1066 129 18 0 chr12 135514969 135515139 -8271316 + AluJo SINE Alu 122 294 -18 1703 120 78 0 chr12 135515262 135515520 -8270935 + AluSx SINE Alu 1 278 -34 2271 95 0 0 chr12 135515553 135515849 -8270606 + AluSg SINE Alu 7 302 -8 475 200 255 7 chr12 135516837 135516982 -8269473 + MER5A DNA MER1_type 9 189 0 201 289 211 22 chr12 135517071 135517161 -8269294 - L2 LINE L2 -15 3257 3151 317 136 0 0 chr12 135517361 135517405 -8269050 + Alu SINE Alu 4 47 -261 917 147 0 0 chr12 135517449 135517592 -8268863 + FRAM SINE Alu 18 160 -16 1802 136 39 0 chr12 135517636 135517934 -8268521 + AluSx SINE Alu 1 312 0 454 321 8 0 chr12 135517955 135518086 -8268369 - MIR SINE MIR -15 247 116 335 336 101 13 chr12 135518097 135518246 -8268209 + L1M4 LINE L1 3297 3458 -2688 323 302 95 16 chr12 135518404 135518593 -8267862 + L1M4 LINE L1 3847 4050 -2096 326 331 49 7 chr12 135518728 135518861 -8267594 + L1M4 LINE L1 4231 4372 -1774 2136 116 6 3 chr12 135518861 135519172 -8267283 + AluSx SINE Alu 1 312 0 1382 163 143 4 chr12 135519206 135519464 -8266991 - AluJb SINE Alu -8 294 1 470 340 62 33 chr12 135521266 135521365 -8265090 - MIR SINE MIR -4 258 163 2073 80 62 0 chr12 135521365 135521640 -8264815 + AluY SINE Alu 1 292 -19 470 340 62 33 chr12 135521640 135521784 -8264671 - MIR SINE MIR -99 163 8 396 55 0 0 chr12 135522576 135522631 -8263824 + (CA)n Simple_repeat Simple_repeat 1 55 0 402 322 89 41 chr12 135526419 135526857 -8259598 + L2 LINE L2 2841 3299 -14 506 172 45 0 chr12 135526867 135527024 -8259431 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 184 167 42 0 chr12 135527049 135527097 -8259358 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 2502 45 3 6 chr12 135529835 135530146 -8256309 - AluY SINE Alu -1 310 1 2307 92 20 26 chr12 135530167 135530515 -8255940 - MER1A DNA MER1_type 0 529 184 2140 110 0 17 chr12 135530515 135530816 -8255639 - AluSx SINE Alu -16 296 1 2281 107 0 0 chr12 135530817 135531125 -8255330 - AluSx SINE Alu -4 308 1 764 128 0 48 chr12 135531147 135531272 -8255183 - FLAM_C SINE Alu -14 119 1 842 150 0 0 chr12 135531356 135531489 -8254966 + AluSq/x SINE Alu 2 134 -179 1579 181 0 24 chr12 135531589 135531688 -8254767 + AluJo SINE Alu 16 116 -196 1859 167 46 35 chr12 135531688 135532059 -8254396 - THE1C LTR MaLR 0 375 1 1579 181 0 24 chr12 135532059 135532257 -8254198 + AluJo SINE Alu 116 306 -6 570 165 25 25 chr12 135532260 135532381 -8254074 + MER5A DNA MER1_type 68 188 -1 346 300 188 40 chr12 135532435 135532667 -8253788 + L1MC4 LINE L1 7498 7694 -348 240 0 32 0 chr12 135532667 135532698 -8253757 + (TTTA)n Simple_repeat Simple_repeat 2 160 0 1973 96 52 4 chr12 135532698 135532970 -8253485 - AluSx SINE Alu -1 315 1 346 300 188 40 chr12 135532970 135533109 -8253346 + L1MC4 LINE L1 7693 7925 -117 880 229 263 22 chr12 135533268 135533679 -8252776 - MLT1J LTR MaLR -1 510 1 886 206 0 24 chr12 135533710 135533880 -8252575 - AluJb SINE Alu -21 291 126 1454 199 4 0 chr12 135533948 135534204 -8252251 + AluSx SINE Alu 1 257 -55 382 226 81 24 chr12 135534231 135534355 -8252100 - THE1C LTR MaLR -36 339 209 2402 104 0 3 chr12 135535474 135535782 -8250673 + AluJo SINE Alu 1 307 -5 422 237 225 17 chr12 135535814 135536050 -8250405 - L2 LINE L2 -2 3311 3027 189 241 13 51 chr12 135537044 135537123 -8249332 + L2 LINE L2 2924 2999 -273 291 292 18 35 chr12 135537267 135537380 -8249075 - L2 LINE L2 -1 3271 3161 2177 106 17 3 chr12 135537837 135538129 -8248326 + AluSx SINE Alu 1 296 -16 2302 60 0 0 chr12 135538319 135538584 -8247871 - AluY SINE Alu -12 299 35 29 0 0 0 chr12 135538592 135538621 -8247834 + AT_rich Low_complexity Low_complexity 1 29 0 1573 174 0 43 chr12 135538631 135538907 -8247548 + AluJo SINE Alu 1 264 -48 2398 78 3 0 chr12 135539955 135540251 -8246204 + AluY SINE Alu 1 297 -14 2308 88 30 0 chr12 135540255 135540550 -8245905 + AluSq SINE Alu 1 304 -9 2389 95 0 0 chr12 135540575 135540871 -8245584 + AluSc SINE Alu 2 297 -12 2186 139 0 0 chr12 135540883 135541186 -8245269 + AluSx SINE Alu 1 303 -9 394 139 0 59 chr12 135541188 135541289 -8245166 + L1MB2 LINE L1 6073 6167 -4 1917 150 18 0 chr12 135541291 135541577 -8244878 - AluJo SINE Alu -21 291 1 207 0 0 0 chr12 135541596 135541619 -8244836 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 700 154 217 40 chr12 135542222 135542397 -8244058 + MIR SINE MIR 19 224 -38 2349 99 0 10 chr12 135542619 135542931 -8243524 + AluSg1 SINE Alu 1 309 0 690 107 0 36 chr12 135543577 135543689 -8242766 + FRAM SINE Alu 53 160 -16 2123 130 10 0 chr12 135543691 135543991 -8242464 + AluSq SINE Alu 2 304 -9 374 202 146 0 chr12 135544307 135544396 -8242059 - U6 snRNA snRNA -5 102 1 1318 215 173 33 chr12 135544464 135544916 -8241539 + MLT1F LTR MaLR 28 542 0 540 285 24 18 chr12 135545041 135545206 -8241249 + MIR SINE MIR 97 262 0 958 168 0 0 chr12 135545326 135545475 -8240980 - FRAM SINE Alu -8 168 20 2182 137 60 8 chr12 135545521 135545887 -8240568 - LTR32 LTR ERVL 0 471 87 2408 73 0 10 chr12 135546706 135547006 -8239449 + AluSg SINE Alu 1 297 -13 321 240 45 91 chr12 135547253 135547376 -8239079 - Charlie8 DNA MER1_type -2190 227 111 2005 142 0 7 chr12 135547376 135547672 -8238783 - AluJb SINE Alu -18 294 1 321 240 45 91 chr12 135547672 135547702 -8238753 - Charlie8 DNA MER1_type -2306 111 81 557 269 42 6 chr12 135548039 135548206 -8238249 - MIR SINE MIR -48 214 42 2262 93 21 0 chr12 135548206 135548497 -8237958 + AluSq SINE Alu 1 297 -16 186 314 76 42 chr12 135548939 135549057 -8237398 - L2 LINE L2 -560 2754 2633 2484 64 10 0 chr12 135549291 135549589 -8236866 + AluSp SINE Alu 1 301 -12 204 137 41 82 chr12 135550649 135550722 -8235733 + (CCCCG)n Simple_repeat Simple_repeat 3 72 0 239 337 53 0 chr12 135550935 135551030 -8235425 - L2 LINE L2 -5 3308 3209 519 126 42 11 chr12 135551172 135551267 -8235188 + MER4A LTR ERV1 1 98 -566 453 144 42 5 chr12 135551267 135551385 -8235070 + MER4A LTR ERV1 261 441 -223 2090 83 24 42 chr12 135551399 135551566 -8234889 - AluSx SINE Alu -15 297 136 2330 90 3 31 chr12 135551566 135551888 -8234567 - AluSp SINE Alu 0 313 1 2090 83 24 42 chr12 135551888 135552009 -8234446 - AluSx SINE Alu -176 136 14 2945 94 85 82 chr12 135552010 135552332 -8234123 + MER41-int LTR ERV1 143 463 -4552 3898 110 2 0 chr12 135552332 135552885 -8233570 + MER41A LTR ERV1 1 554 0 2945 94 85 82 chr12 135552885 135553098 -8233357 + MER41-int LTR ERV1 463 674 -4341 387 0 0 0 chr12 135553098 135553141 -8233314 + (CA)n Simple_repeat Simple_repeat 1 43 0 2945 94 85 82 chr12 135553141 135553733 -8232722 + MER41-int LTR ERV1 674 782 -4233 2344 91 3 31 chr12 135553733 135554053 -8232402 + AluY SINE Alu 1 311 0 2945 94 85 82 chr12 135554053 135554177 -8232278 + MER41-int LTR ERV1 782 904 -4111 2262 114 3 0 chr12 135554179 135554485 -8231970 + AluSp SINE Alu 1 307 -6 3929 145 50 12 chr12 135554499 135555256 -8231199 + MER41-int LTR ERV1 4588 5373 -573 556 156 25 33 chr12 135555560 135555682 -8230773 - MER5A DNA MER1_type -1 188 68 1985 154 0 22 chr12 135555687 135555883 -8230572 - AluJo SINE Alu -8 304 116 1651 170 46 35 chr12 135555883 135556254 -8230201 + THE1C LTR MaLR 1 375 0 1985 154 0 22 chr12 135556254 135556368 -8230087 - AluJo SINE Alu -196 116 1 435 241 44 32 chr12 135556724 135556882 -8229573 - Charlie1 DNA MER1_type 0 2761 2602 1714 163 25 4 chr12 135556887 135557185 -8229270 - AluJo SINE Alu 0 304 1 442 226 58 67 chr12 135557196 135557248 -8229207 - Charlie1 DNA MER1_type -132 2629 2578 1755 141 47 36 chr12 135557248 135557543 -8228912 + MLT1A1 LTR MaLR 1 302 -63 2181 89 58 10 chr12 135557543 135557835 -8228620 + AluSx SINE Alu 1 306 -6 1755 141 47 36 chr12 135557835 135557900 -8228555 + MLT1A1 LTR MaLR 302 365 0 442 226 58 67 chr12 135557900 135558055 -8228400 - Charlie1 DNA MER1_type -183 2578 2424 523 194 0 88 chr12 135558077 135558247 -8228208 - MER33 DNA MER1_type -22 341 187 274 146 0 21 chr12 135558322 135558370 -8228085 - Charlie1 DNA MER1_type -2708 53 7 1108 114 7 0 chr12 135558631 135558780 -8227675 + AluSq/x SINE Alu 1 150 -162 388 204 21 0 chr12 135558893 135558986 -8227469 - MER33 DNA MER1_type -7 356 262 2231 96 0 7 chr12 135559032 135559312 -8227143 - AluSg SINE Alu -32 278 1 2017 141 0 44 chr12 135559312 135559496 -8226959 - AluJb SINE Alu -4 308 142 2174 101 3 23 chr12 135559496 135559803 -8226652 - AluSg SINE Alu -5 305 5 2017 141 0 44 chr12 135559803 135559938 -8226517 - AluJb SINE Alu -170 142 3 594 199 108 6 chr12 135559938 135560114 -8226341 - MER33 DNA MER1_type -88 236 43 273 250 0 14 chr12 135560342 135560414 -8226041 + MIR SINE MIR 29 99 -163 1732 196 40 27 chr12 135560750 135561154 -8225301 + MLT1C LTR MaLR 1 409 -58 1286 134 0 0 chr12 135561154 135561333 -8225122 - AluSg/x SINE Alu -1 311 133 1192 138 11 32 chr12 135561438 135561627 -8224828 - AluJo SINE Alu -127 185 1 2355 81 10 3 chr12 135561639 135561934 -8224521 - AluSc SINE Alu -12 297 1 1177 83 7 0 chr12 135562287 135562432 -8224023 + AluSq/x SINE Alu 1 146 -166 658 103 65 0 chr12 135562433 135562540 -8223915 + AluSc SINE Alu 194 307 -2 643 157 229 0 chr12 135562621 135562774 -8223681 + MER53 DNA DNA 1 188 -1 203 88 29 0 chr12 135563135 135563169 -8223286 + (CA)n Simple_repeat Simple_repeat 1 35 0 567 135 0 0 chr12 135564619 135564708 -8221747 - AluS SINE Alu -220 93 5 557 136 40 140 chr12 135564714 135564768 -8221687 + Charlie1 DNA MER1_type 2537 2595 -166 2185 139 0 0 chr12 135564768 135565100 -8221355 - AluSx SINE Alu 0 312 1 2401 82 0 35 chr12 135565105 135565424 -8221031 - AluY SINE Alu -2 309 2 557 136 40 140 chr12 135565424 135565591 -8220864 + Charlie1 DNA MER1_type 2599 2741 -20 1425 221 28 3 chr12 135565778 135566063 -8220392 - AluJo SINE Alu -20 292 1 402 232 0 26 chr12 135566117 135566217 -8220238 - L1ME LINE L1 -307 5814 5732 974 133 0 0 chr12 135566217 135566375 -8220080 - L1PA15 LINE L1 -5 6160 6003 402 232 0 26 chr12 135566375 135566405 -8220050 - L1ME LINE L1 -389 5732 5703 700 215 0 58 chr12 135566547 135566608 -8219847 - AluJo/FRAM SINE Alu -4 298 235 2256 104 0 17 chr12 135566608 135566906 -8219549 - AluSq SINE Alu -20 293 1 700 215 0 58 chr12 135566906 135567016 -8219439 - AluJo/FRAM SINE Alu -67 235 137 1516 161 66 59 chr12 135567512 135567645 -8218810 + AluJo SINE Alu 1 132 -180 2287 97 7 0 chr12 135567645 135567945 -8218510 + AluSx SINE Alu 1 302 -10 1516 161 66 59 chr12 135567945 135568116 -8218339 + AluJo SINE Alu 132 307 -5 2294 91 6 31 chr12 135568200 135568518 -8217937 - AluSg SINE Alu 0 310 1 2019 151 3 3 chr12 135568520 135568819 -8217636 - AluSx SINE Alu -13 299 1 719 164 0 9 chr12 135568849 135568965 -8217490 - FLAM_C SINE Alu -17 126 12 1590 92 9 40 chr12 135569132 135569360 -8217095 + AluSg/x SINE Alu 75 295 -17 1793 170 21 0 chr12 135569473 135569808 -8216647 - MLT1B LTR MaLR -45 345 4 232 266 221 0 chr12 135570217 135570330 -8216125 - MIR SINE MIR -19 243 106 2175 129 0 0 chr12 135570490 135570770 -8215685 + AluSx SINE Alu 3 282 -30 1880 178 3 0 chr12 135570839 135571132 -8215323 + AluSx SINE Alu 1 294 -18 993 168 6 6 chr12 135571144 135571305 -8215150 + FRAM SINE Alu 1 160 -16 364 231 50 83 chr12 135571442 135571563 -8214892 - MIR SINE MIR -90 118 2 2174 102 20 10 chr12 135571678 135571983 -8214472 + AluSc SINE Alu 1 308 -1 2365 116 0 0 chr12 135571995 135572298 -8214157 + AluSx SINE Alu 3 305 -7 252 254 225 7 chr12 135572570 135572712 -8213743 + L1MC/D LINE L1 5713 5885 -1923 1628 157 34 0 chr12 135573095 135573363 -8213092 + AluJo SINE Alu 6 282 -30 1903 157 6 22 chr12 135573977 135574290 -8212165 + AluJo SINE Alu 1 308 -4 1054 201 25 1 chr12 135575536 135575900 -8210555 - MER68 LTR ERV1 -8 554 146 1986 150 24 0 chr12 135575956 135576250 -8210205 - AluJb SINE Alu -11 301 1 1292 221 65 35 chr12 135576304 135576702 -8209753 + MLT1C LTR MaLR 4 413 -54 894 149 0 0 chr12 135576810 135576931 -8209524 + AluSg/x SINE Alu 135 255 -55 1403 149 88 58 chr12 135576958 135577287 -8209168 - THE1C LTR MaLR -36 339 1 2373 83 7 0 chr12 135577403 135577692 -8208763 + AluSp SINE Alu 1 291 -22 2332 97 3 3 chr12 135579555 135579853 -8206602 + AluSx SINE Alu 1 298 -14 1893 107 0 0 chr12 135580273 135580517 -8205938 + AluSq SINE Alu 1 244 -69 572 118 0 12 chr12 135580620 135580705 -8205750 - AluJ/FLAM SINE Alu -227 85 2 360 103 0 0 chr12 135580811 135580869 -8205586 + (TA)n Simple_repeat Simple_repeat 2 59 0 2291 89 3 0 chr12 135580869 135581160 -8205295 - AluY SINE Alu -19 292 1 1998 125 39 0 chr12 135581220 135581500 -8204955 + AluSg SINE Alu 1 291 -19 201 182 0 45 chr12 135581906 135581950 -8204505 + L2 LINE L2 3272 3313 0 196 312 40 16 chr12 135582639 135582764 -8203691 + L2 LINE L2 3185 3312 -1 25 23 0 23 chr12 135582912 135582942 -8203513 + AT_rich Low_complexity Low_complexity 1 31 -11 2432 67 3 3 chr12 135582942 135583241 -8203214 - AluSc SINE Alu -10 299 1 25 23 0 23 chr12 135583241 135583253 -8203202 + AT_rich Low_complexity Low_complexity 31 42 0 1890 90 0 22 chr12 135584098 135584365 -8202090 + AluSq SINE Alu 51 311 -2 25 0 0 0 chr12 135584575 135584600 -8201855 + AT_rich Low_complexity Low_complexity 1 25 0 2122 36 8 0 chr12 135584603 135584851 -8201604 - L1PA3 LINE L1 -5 6150 5901 180 0 0 0 chr12 135585276 135585296 -8201159 + (T)n Simple_repeat Simple_repeat 1 20 0 2369 102 0 0 chr12 135585315 135585618 -8200837 + AluSx SINE Alu 1 303 -9 1009 102 0 0 chr12 135585636 135585764 -8200691 + AluSq/x SINE Alu 1 128 -185 420 97 32 0 chr12 135585777 135585839 -8200616 + Alu SINE Alu 238 301 -11 2230 64 6 88 chr12 135585839 135586169 -8200286 + AluY SINE Alu 1 303 -8 2063 115 3 39 chr12 135586735 135587040 -8199415 - AluSx SINE Alu -18 294 1 2338 109 3 0 chr12 135587125 135587429 -8199026 - AluSq SINE Alu -8 305 1 1546 85 20 0 chr12 135587680 135587879 -8198576 + AluSg SINE Alu 1 203 -107 365 152 25 25 chr12 135588205 135588284 -8198171 + MER4A LTR ERV1 1 79 -585 970 190 0 0 chr12 135588376 135588539 -8197916 + AluSg/x SINE Alu 137 299 -13 751 237 26 28 chr12 135588553 135588825 -8197630 + MER4C LTR ERV1 276 465 0 2205 128 0 3 chr12 135588861 135589166 -8197289 - AluSx SINE Alu 0 312 9 2371 96 3 0 chr12 135589174 135589476 -8196979 - AluSp SINE Alu -10 303 1 2377 225 48 44 chr12 135589508 135589714 -8196741 - L1ME1 LINE L1 -5 6161 5957 2333 95 0 13 chr12 135589714 135590018 -8196437 - AluSg SINE Alu -10 300 1 2377 225 48 44 chr12 135590018 135590519 -8195936 - L1ME1 LINE L1 -209 5957 5451 1761 172 34 7 chr12 135590520 135590816 -8195639 - AluJb SINE Alu -8 304 1 2324 100 7 3 chr12 135591184 135591493 -8194962 - AluSg SINE Alu 0 310 1 27 0 0 0 chr12 135591493 135591520 -8194935 + AT_rich Low_complexity Low_complexity 1 27 0 301 89 22 10 chr12 135591520 135591583 -8194872 - AluSg/x SINE Alu -177 123 80 1551 204 70 22 chr12 135591794 135592151 -8194304 + MLT1A2 LTR MaLR 1 374 0 2041 138 7 0 chr12 135592192 135592488 -8193967 - AluSq SINE Alu -15 298 1 2448 96 0 6 chr12 135592659 135592971 -8193484 + AluSg SINE Alu 1 310 0 1463 164 145 4 chr12 135593140 135593402 -8193053 + AluSx SINE Alu 1 299 -13 2450 97 3 0 chr12 135593614 135593924 -8192531 + AluSp SINE Alu 2 312 -1 2283 92 0 0 chr12 135593949 135594233 -8192222 + AluSx SINE Alu 13 296 -16 328 255 28 66 chr12 135594257 135594363 -8192092 - MIR SINE MIR -140 122 21 189 147 0 0 chr12 135594834 135594868 -8191587 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 813 189 11 47 chr12 135594921 135595111 -8191344 + Charlie1b DNA MER1_type 84 266 -257 1391 95 0 0 chr12 135595111 135595279 -8191176 + AluSc SINE Alu 1 168 -141 891 118 0 0 chr12 135595515 135595634 -8190821 - AluJb SINE Alu -193 119 1 236 133 0 22 chr12 135596117 135596162 -8190293 + L2 LINE L2 2492 2535 -779 28 29 0 0 chr12 135596189 135596224 -8190231 + AT_rich Low_complexity Low_complexity 1 35 0 452 130 26 0 chr12 135596427 135596504 -8189951 - AluSp/q SINE Alu -12 301 223 2431 84 7 0 chr12 135596538 135596835 -8189620 - AluSq SINE Alu -14 299 1 2362 97 0 3 chr12 135596847 135597158 -8189297 - AluSg SINE Alu 0 310 1 443 242 42 42 chr12 135597182 135597347 -8189108 + L2 LINE L2 2646 2810 -504 475 254 46 15 chr12 135597376 135597506 -8188949 + L2 LINE L2 2925 3058 -255 1597 132 0 0 chr12 135597506 135597733 -8188722 - AluSq SINE Alu -5 308 82 1928 114 0 0 chr12 135598456 135598710 -8187745 - AluSq SINE Alu -11 302 49 466 214 16 16 chr12 135598727 135598853 -8187602 + Charlie2a DNA MER1_type 853 978 -1884 651 97 0 11 chr12 135599322 135599415 -8187040 + AluY SINE Alu 205 296 -15 194 313 8 86 chr12 135599664 135599792 -8186663 + L2 LINE L2 3146 3263 -9 * 259 337 119 0 chr12 135599775 135599876 -8186579 - L2 LINE L2 -12 3260 3148 1161 155 0 21 chr12 135600133 135600327 -8186128 + AluJo SINE Alu 116 305 -7 855 255 150 11 chr12 135600452 135600987 -8185468 + L2 LINE L2 2524 3140 -173 2367 112 0 10 chr12 135600987 135601292 -8185163 - AluSx SINE Alu -9 303 2 1418 144 22 81 chr12 135601345 135601712 -8184743 - MER4A LTR ERV1 0 664 261 574 152 0 10 chr12 135601712 135601811 -8184644 - MER4A LTR ERV1 -566 98 1 7075 90 46 26 chr12 135601819 135601874 -8184581 - MER4A-int LTR ERV1 -2 6596 6544 2535 62 13 0 chr12 135601874 135602181 -8184274 + AluY SINE Alu 1 311 0 7075 90 46 26 chr12 135602181 135603254 -8183201 - MER4A-int LTR ERV1 -54 6544 5445 484 313 84 16 chr12 135603434 135603862 -8182593 + L1ME4a LINE L1 5610 6066 -55 423 116 14 0 chr12 135604065 135604134 -8182321 + MLT2B3 LTR ERVL 2 71 -483 1745 215 79 10 chr12 135604231 135604635 -8181820 + MLT2B3 LTR ERVL 75 506 -48 852 86 0 17 chr12 135604671 135604787 -8181668 - AluSq/x SINE Alu -177 135 22 464 277 44 38 chr12 135605416 135605565 -8180890 + MIR SINE MIR 10 162 -46 2010 184 36 16 chr12 135605580 135606019 -8180436 + L1MB5 LINE L1 5649 6096 -78 226 111 0 0 chr12 135606119 135606155 -8180300 + L1MB2 LINE L1 6134 6169 -2 370 194 31 0 chr12 135657690 135657788 -8128667 - MLT1C LTR MaLR -293 174 74 486 299 151 24 chr12 135658256 135658668 -8127787 + L2 LINE L2 2850 3313 0 250 219 123 0 chr12 135659023 135659096 -8127359 + L1MB4 LINE L1 6098 6179 -1 254 316 36 26 chr12 135659892 135660085 -8126370 - L1ME3A LINE L1 -223 5947 5753 201 281 0 0 chr12 135660425 135660482 -8125973 + G-rich Low_complexity Low_complexity 1 57 0 2642 52 0 0 chr12 135660769 135661077 -8125378 - AluY SINE Alu -3 308 1 593 150 124 18 chr12 135661083 135661196 -8125259 - FLAM_A SINE Alu -8 125 1 755 279 200 35 chr12 135661196 135662171 -8124284 + L2 LINE L2 1803 3011 -302 743 183 0 42 chr12 135662236 135662378 -8124077 - FLAM_C SINE Alu -5 138 3 1146 240 23 16 chr12 135662621 135662879 -8123576 - MIR SINE MIR -1 261 2 207 100 0 0 chr12 135663063 135663093 -8123362 + (TA)n Simple_repeat Simple_repeat 2 31 0 237 321 24 0 chr12 135663176 135663260 -8123195 - MIR SINE MIR -1 261 176 640 273 58 16 chr12 135663364 135663606 -8122849 + MLT1H LTR MaLR 91 342 -207 2347 68 0 4 chr12 135663641 135663962 -8122493 + AluY SINE Alu 1 320 0 2208 117 7 3 chr12 135663964 135664264 -8122191 + AluSg SINE Alu 1 301 -9 1001 161 0 0 chr12 135664267 135664422 -8122033 + AluJb SINE Alu 141 295 -17 515 277 15 0 chr12 135664424 135664554 -8121901 + MLT1H LTR MaLR 405 536 -13 246 262 16 16 chr12 135664580 135664641 -8121814 - MIR SINE MIR -175 87 27 4329 181 24 55 chr12 135664706 135664859 -8121596 - L1MB4 LINE L1 -3 6177 6021 2373 84 3 7 chr12 135664859 135665157 -8121298 + AluSx SINE Alu 1 297 -15 4329 181 24 55 chr12 135665157 135666011 -8120444 - L1MB4 LINE L1 -159 6021 5237 1874 116 30 124 chr12 135666011 135666382 -8120073 - MER1B DNA MER1_type -1 336 1 4329 181 24 55 chr12 135666382 135666699 -8119756 - L1MB4 LINE L1 -943 5237 4912 1107 152 0 0 chr12 135666733 135666898 -8119557 + FAM SINE Alu 5 169 -6 384 318 182 4 chr12 135668102 135668360 -8118095 - MER102b DNA MER1_type -27 314 11 2176 273 99 16 chr12 135668390 135669307 -8117148 + L2 LINE L2 2243 3228 -85 571 222 7 30 chr12 135669447 135669582 -8116873 + MIR SINE MIR 91 222 -40 228 222 32 0 chr12 135669764 135669827 -8116628 + (TA)n Simple_repeat Simple_repeat 1 65 0 339 237 115 83 chr12 135669827 135670105 -8116350 - L1MCa LINE L1 -4218 2208 1922 306 188 30 15 chr12 135670112 135670245 -8116210 + (TA)n Simple_repeat Simple_repeat 1 135 0 603 303 57 29 chr12 135670245 135670679 -8115776 - L1MC4a LINE L1 -157 5964 5523 483 293 53 5 chr12 135671019 135671227 -8115228 - L1MC4a LINE L1 -1905 5903 5686 478 233 113 23 chr12 135671530 135671663 -8114792 - L2 LINE L2 -2 3311 3167 1246 233 160 4 chr12 135671813 135672263 -8114192 - MLT1G1 LTR MaLR 0 595 76 409 260 132 29 chr12 135672450 135672645 -8113810 - MIR3 SINE MIR -43 219 7 1003 270 66 12 chr12 135673465 135673784 -8112671 + L2 LINE L2 2407 2742 -572 760 231 7 0 chr12 135674082 135674225 -8112230 - Charlie8 DNA MER1_type -2152 265 122 775 287 27 4 chr12 135674250 135674508 -8111947 - L1MC4 LINE L1 -967 7075 6812 1025 226 9 5 chr12 135675117 135675338 -8111117 + MIR SINE MIR 35 256 -6 383 239 18 0 chr12 135675471 135675584 -8110871 + CT-rich Low_complexity Low_complexity 2 116 0 561 193 12 30 chr12 135675606 135675772 -8110683 + C-rich Low_complexity Low_complexity 2 164 0 735 215 80 6 chr12 135675811 135675974 -8110481 + MER45A DNA AcHobo 4 178 0 2386 103 0 0 chr12 135677262 135677564 -8108891 - AluSx SINE Alu -10 302 1 808 254 16 11 chr12 135677587 135677772 -8108683 - MIR SINE MIR -26 236 51 256 286 78 0 chr12 135677811 135677888 -8108567 - Charlie8 DNA MER1_type -2141 276 194 379 318 191 0 chr12 135678130 135678319 -8108136 - L3 LINE CR1 -89 1488 1264 207 348 79 28 chr12 135678336 135678514 -8107941 + L2 LINE L2 2731 2917 -397 442 202 32 0 chr12 135678534 135678628 -8107827 - L1MD3 LINE L1 0 7995 7899 563 286 104 6 chr12 135678633 135678967 -8107488 - L2 LINE L2 -240 3073 2710 581 206 103 7 chr12 135679205 135679351 -8107104 + MIR SINE MIR 81 240 -22 491 336 81 3 chr12 135679908 135680203 -8106252 + L1ME3A LINE L1 5621 5938 -232 3224 85 16 5 chr12 135680421 135680857 -8105598 - L1PA10 LINE L1 0 6168 5728 367 251 128 67 chr12 135681100 135681357 -8105098 + MIR SINE MIR 3 261 -1 1899 166 0 7 chr12 135681798 135682093 -8104362 + AluJb SINE Alu 1 293 -19 609 299 66 7 chr12 135682906 135683180 -8103275 + MER46C DNA MER2_type 6 295 -43 2370 222 87 31 chr12 135683348 135683539 -8102916 + L1ME1 LINE L1 5382 5561 -605 2048 126 14 3 chr12 135683539 135683833 -8102622 - AluSq SINE Alu -6 307 11 2370 222 87 31 chr12 135683833 135684133 -8102322 + L1ME1 LINE L1 5561 5843 -323 2975 71 0 3 chr12 135684133 135684498 -8101957 + THE1B LTR MaLR 1 364 0 2370 222 87 31 chr12 135684498 135684745 -8101710 + L1ME1 LINE L1 5843 6162 -4 344 242 82 82 chr12 135684934 135685215 -8101240 - L1MC4a LINE L1 -1822 5986 5706 1908 137 23 3 chr12 135685218 135685517 -8100938 + AluSq SINE Alu 1 305 -8 2252 84 0 0 chr12 135685636 135685910 -8100545 + AluSg SINE Alu 26 299 -11 321 314 40 16 chr12 135685956 135686080 -8100375 - L1MC4a LINE L1 -2035 5773 5647 864 198 73 0 chr12 135686088 135686265 -8100190 - MER20 DNA MER1_type -24 195 6 715 280 32 0 chr12 135686759 135686945 -8099510 - MIR SINE MIR -38 224 33 802 318 35 8 chr12 135687009 135687264 -8099191 - MIR SINE MIR 0 262 1 708 321 55 10 chr12 135687954 135688265 -8098190 - L1ME3A LINE L1 -223 5947 5623 293 218 218 0 chr12 135688297 135688384 -8098071 + MLT1E3 LTR MaLR 47 152 -502 1376 224 18 21 chr12 135688449 135688788 -8097667 + MLT1A1 LTR MaLR 25 362 -3 * 1806 222 23 45 chr12 135688788 135689202 -8097253 + MLT1E3 LTR MaLR 157 560 -64 806 166 66 0 chr12 135689202 135689353 -8097102 - L1MB3 LINE L1 -7 6176 6016 1806 222 23 45 chr12 135689353 135689417 -8097038 + MLT1E3 LTR MaLR 560 624 0 1021 276 91 24 chr12 135689918 135690335 -8096120 - MLT1K LTR MaLR 0 588 144 3040 114 22 0 chr12 135690728 135691177 -8095278 - L1PA16 LINE L1 -2 6164 5706 1294 226 159 56 chr12 135691180 135691715 -8094740 + MLT1G LTR MaLR 1 590 0 557 226 8 80 chr12 135691777 135691974 -8094481 + L1ME LINE L1 5592 5781 -340 449 239 58 45 chr12 135691993 135692148 -8094307 - MIR SINE MIR -30 232 76 21 57 0 0 chr12 135692257 135692292 -8094163 + AT_rich Low_complexity Low_complexity 1 35 0 372 71 0 0 chr12 135692945 135693001 -8093454 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 350 363 112 17 chr12 135693141 135693320 -8093135 + MIR SINE MIR 34 229 -33 402 248 44 22 chr12 135693365 135693502 -8092953 - L1MCa LINE L1 -4109 2317 2178 733 289 56 55 chr12 135693502 135694148 -8092307 + L2 LINE L2 2688 3313 0 353 276 13 0 chr12 135694952 135695028 -8091427 - L2 LINE L2 -4 3268 3192 401 242 55 121 chr12 135695248 135695401 -8091054 + L2 LINE L2 1552 1684 -1630 1743 154 21 11 chr12 135695401 135695716 -8090739 + AluJo SINE Alu 1 318 0 401 242 55 121 chr12 135695716 135695817 -8090638 + L2 LINE L2 1684 1790 -1524 2080 122 0 0 chr12 135695822 135696110 -8090345 + AluSx SINE Alu 1 288 -24 192 125 0 0 chr12 135696149 135696181 -8090274 + (T)n Simple_repeat Simple_repeat 1 32 0 211 143 16 111 chr12 135696293 135696356 -8090099 + MIR3 SINE MIR 98 154 -54 249 316 13 0 chr12 135698440 135698519 -8087936 - L3 LINE CR1 -114 1463 1384 233 267 33 33 chr12 135698962 135699052 -8087403 + MER101B LTR ERV1 286 375 -195 331 182 15 0 chr12 135699258 135699324 -8087131 + MLT1K LTR MaLR 507 573 -15 350 262 76 0 chr12 135700155 135700300 -8086155 + LTR16A LTR ERVL 295 450 0 944 200 22 0 chr12 135700562 135700747 -8085708 - MER5A DNA MER1_type 0 189 1 239 303 0 0 chr12 135702810 135702886 -8083569 - Charlie8 DNA MER1_type 0 2417 2342 * 731 287 85 35 chr12 135702882 135703248 -8083207 - Charlie8 DNA MER1_type -1996 421 38 205 339 0 0 chr12 135703328 135703384 -8083071 - L3 LINE CR1 -11 1566 1511 339 304 136 19 chr12 135704050 135704264 -8082191 - L3 LINE CR1 -251 1326 1088 215 204 20 20 chr12 135704627 135704676 -8081779 - MIR SINE MIR -11 251 203 2014 154 3 0 chr12 135704809 135705108 -8081347 - AluJb SINE Alu -12 300 1 457 256 150 8 chr12 135705120 135705253 -8081202 - MIR SINE MIR -74 188 37 2021 147 30 0 chr12 135705382 135705681 -8080774 + AluJb SINE Alu 1 308 -4 2309 113 0 3 chr12 135706057 135706359 -8080096 - AluSq SINE Alu -12 301 1 521 114 38 0 chr12 135706602 135706707 -8079748 + CT-rich Low_complexity Low_complexity 2 110 0 27 0 0 0 chr12 135707070 135707097 -8079358 + AT_rich Low_complexity Low_complexity 1 27 0 943 178 76 10 chr12 135707812 135708009 -8078446 + MER58A DNA MER1_type 10 219 -5 568 86 0 12 chr12 135708047 135708128 -8078327 + MADE1 DNA Mariner 1 80 0 1575 184 25 0 chr12 135708411 135708689 -8077766 + AluJo SINE Alu 7 291 -21 1668 189 109 48 chr12 135708932 135709407 -8077048 + MLT1D LTR MaLR 1 504 -1 601 296 177 16 chr12 135709452 135709584 -8076871 - L2 LINE L2 -4 3309 3200 1706 232 96 34 chr12 135709584 135710144 -8076311 - MLT1G1 LTR MaLR 0 595 1 601 296 177 16 chr12 135710144 135710322 -8076133 - L2 LINE L2 -113 3200 2949 515 266 86 45 chr12 135710490 135710712 -8075743 + L2 LINE L2 3081 3311 -2 1321 200 100 0 chr12 135711742 135712012 -8074443 - AluJo SINE Alu -15 297 1 819 206 12 6 chr12 135712130 135712290 -8074165 + AluJb SINE Alu 122 282 -30 252 0 0 0 chr12 135712297 135712325 -8074130 + (TG)n Simple_repeat Simple_repeat 1 28 0 871 171 13 6 chr12 135713225 135713383 -8073072 - AluJo SINE Alu -32 280 122 956 178 0 76 chr12 135713501 135713686 -8072769 + AluJo SINE Alu 1 171 -141 851 271 82 51 chr12 135713717 135714171 -8072284 + Charlie8 DNA MER1_type 32 499 -1918 457 279 50 7 chr12 135714709 135714849 -8071606 + MIR SINE MIR 84 229 -33 205 267 50 17 chr12 135714853 135714913 -8071542 + L2 LINE L2 3215 3276 -37 262 286 71 0 chr12 135714929 135715013 -8071442 + L2 LINE L2 3223 3312 -1 2309 174 54 15 chr12 135715302 135715780 -8070675 - MLT1D LTR MaLR 0 505 9 471 246 165 75 chr12 135716252 135716282 -8070173 - L1ME3A LINE L1 0 6170 6144 1496 182 149 0 chr12 135716282 135716584 -8069871 - MER7A DNA MER2_type -1 345 1 471 246 165 75 chr12 135716584 135716595 -8069860 - L1ME3A LINE L1 -26 6144 6135 1862 157 36 18 chr12 135716595 135716927 -8069528 - MER44D DNA MER2_type -1 608 1 471 246 165 75 chr12 135716927 135717218 -8069237 - L1ME3A LINE L1 -35 6135 5807 449 208 161 78 chr12 135717226 135717320 -8069135 + MER58C DNA MER1_type 2 87 -2333 2100 119 16 10 chr12 135717320 135717623 -8068832 + AluSx SINE Alu 1 305 -7 449 208 161 78 chr12 135717623 135717720 -8068735 + MER58C DNA MER1_type 87 209 -6 286 231 0 0 chr12 135718381 135718446 -8068009 - Charlie8 DNA MER1_type -1928 489 425 415 313 129 29 chr12 135718486 135718904 -8067551 - MLT1J LTR MaLR -51 460 1 426 310 59 44 chr12 135719043 135719314 -8067141 - Charlie8 DNA MER1_type -2141 276 2 782 146 0 36 chr12 135719333 135719470 -8066985 + FLAM_C SINE Alu 2 133 0 1249 278 60 26 chr12 135719559 135720095 -8066360 + L1MC4a LINE L1 5508 6061 -1747 204 321 69 46 chr12 135720183 135720314 -8066141 - MIR3 SINE MIR -73 135 2 677 296 60 20 chr12 135721071 135721321 -8065134 - MLT1J LTR MaLR -14 497 238 530 160 170 0 chr12 135721322 135721416 -8065039 + FRAM SINE Alu 51 160 -16 225 184 0 0 chr12 135721418 135721456 -8064999 + MLT1J LTR MaLR 105 142 -369 333 0 0 0 chr12 135721486 135721523 -8064932 + (TG)n Simple_repeat Simple_repeat 2 38 0 954 134 24 43 chr12 135721528 135721692 -8064763 - AluJo SINE Alu -30 282 122 568 301 70 39 chr12 135721788 135722144 -8064311 - LTR16C LTR ERVL -4 487 121 292 280 80 73 chr12 135722274 135722321 -8064134 - MLT1J LTR MaLR -360 151 106 1484 152 3 88 chr12 135722321 135722617 -8063838 - AluJo SINE Alu -14 298 28 292 280 80 73 chr12 135722617 135722719 -8063736 - MLT1J LTR MaLR -405 106 1 1333 219 52 21 chr12 135723179 135723563 -8062892 + MER113 DNA MER1_type? 45 440 -81 2057 137 3 3 chr12 135724680 135724979 -8061476 + AluJb SINE Alu 1 299 -13 1814 130 8 0 chr12 135725084 135725337 -8061118 - AluSx SINE Alu -55 257 3 712 318 57 25 chr12 135725463 135725866 -8060589 - L1ME3 LINE L1 -206 5956 5541 706 175 0 40 chr12 135726197 135726323 -8060132 + FRAM SINE Alu 46 166 -10 257 269 119 45 chr12 135726735 135726869 -8059586 - L2 LINE L2 -2 3311 3168 1944 168 0 0 chr12 135727097 135727389 -8059066 - AluJo SINE Alu -20 292 1 1699 214 62 14 chr12 135728403 135728574 -8057881 + MLT1C LTR MaLR 6 167 -300 2298 93 10 0 chr12 135728574 135728864 -8057591 + AluSq SINE Alu 1 293 -20 1699 214 62 14 chr12 135728864 135728878 -8057577 + MLT1C LTR MaLR 167 179 -288 339 25 0 0 chr12 135728878 135728918 -8057537 + (CA)n Simple_repeat Simple_repeat 2 41 0 1699 214 62 14 chr12 135728918 135729170 -8057285 + MLT1C LTR MaLR 179 465 -2 345 282 65 0 chr12 135729186 135729310 -8057145 + Charlie8 DNA MER1_type 74 205 -2212 1052 260 0 0 chr12 135729485 135729708 -8056747 + MER58A DNA MER1_type 1 223 -1 324 200 0 0 chr12 135729709 135729779 -8056676 - Charlie8 DNA MER1_type -2262 155 86 376 364 6 12 chr12 135730114 135730279 -8056176 + L3b LINE CR1 1299 1462 -121 2069 239 50 22 chr12 135730630 135731170 -8055285 + MER68 LTR ERV1 1 555 -7 975 221 24 14 chr12 135731271 135731484 -8054971 - MIR SINE MIR -2 260 46 1044 114 17 11 chr12 135731573 135731749 -8054706 + L1MA5A LINE L1 6121 6297 0 526 248 81 0 chr12 135731804 135731965 -8054490 - MLT1I LTR MaLR 0 409 236 365 274 26 0 chr12 135732032 135732149 -8054306 - MLT1I LTR MaLR -275 134 15 378 238 88 72 chr12 135733033 135733122 -8053333 + MER117 DNA MER1_type 2 88 -109 2722 42 0 0 chr12 135733122 135733433 -8053022 + AluY SINE Alu 1 311 0 378 238 88 72 chr12 135733433 135733536 -8052919 + MER117 DNA MER1_type 88 197 0 276 328 16 16 chr12 135734022 135734147 -8052308 + MIR SINE MIR 21 145 -117 432 289 118 13 chr12 135735222 135735374 -8051081 - MIR3 SINE MIR -3 205 38 396 252 56 9 chr12 135735723 135735830 -8050625 - L2 LINE L2 0 3313 3202 399 294 47 51 chr12 135735893 135736128 -8050327 - L1MC4a LINE L1 -1923 5885 5652 440 248 108 0 chr12 135736131 135736260 -8050195 - MLT1K LTR MaLR -70 518 376 395 232 40 10 chr12 135736293 135736392 -8050063 - L2 LINE L2 -17 3296 3195 682 254 98 45 chr12 135736392 135736656 -8049799 - MLT1K LTR MaLR -234 354 77 828 258 30 2 chr12 135737458 135737667 -8048788 - MIR SINE MIR -48 214 3 283 282 78 17 chr12 135737676 135737828 -8048627 + MIR SINE MIR 18 184 -63 37 23 0 0 chr12 135737864 135737908 -8048547 + AT_rich Low_complexity Low_complexity 1 44 0 2213 145 15 158 chr12 135737908 135738082 -8048373 - MLT1D LTR MaLR -2 503 306 2024 118 3 0 chr12 135738082 135738378 -8048077 - AluSx SINE Alu -15 297 1 2213 145 15 158 chr12 135738378 135738790 -8047665 - MLT1D LTR MaLR -199 306 1 236 280 0 32 chr12 135739148 135739241 -8047214 - L1MC/D LINE L1 -1891 5917 5828 1292 103 0 31 chr12 135739243 135739437 -8047018 - AluSg/x SINE Alu -14 298 111 400 177 0 0 chr12 135739549 135739628 -8046827 + C-rich Low_complexity Low_complexity 1 79 0 496 225 0 14 chr12 135739653 135739795 -8046660 + T-rich Low_complexity Low_complexity 2 141 0 453 280 14 40 chr12 135739800 135740070 -8046385 + CT-rich Low_complexity Low_complexity 1 262 0 195 220 0 0 chr12 135740077 135740127 -8046328 + T-rich Low_complexity Low_complexity 5 54 0 799 220 41 120 chr12 135740353 135740744 -8045711 + MLT1A1 LTR MaLR 4 363 -2 270 238 50 106 chr12 135740826 135740986 -8045469 + MLT1L LTR MaLR 40 190 -425 282 180 0 0 chr12 135741921 135741982 -8044473 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 203 385 0 0 chr12 135741983 135742079 -8044376 + C-rich Low_complexity Low_complexity 1 96 0 463 202 32 0 chr12 135742265 135742359 -8044096 - L1MD3 LINE L1 0 7995 7899 191 280 0 0 chr12 135742364 135742414 -8044041 - L2 LINE L2 -240 3073 3024 186 43 0 0 chr12 135742415 135742438 -8044017 + (T)n Simple_repeat Simple_repeat 1 23 0 547 282 110 6 chr12 135745529 135745836 -8040619 - L2 LINE L2 -267 3046 2710 573 206 103 7 chr12 135746074 135746220 -8040235 + MIR SINE MIR 81 240 -22 529 312 92 14 chr12 135746777 135747072 -8039383 + L1ME3A LINE L1 5621 5938 -232 3212 85 16 5 chr12 135747289 135747725 -8038730 - L1PA10 LINE L1 0 6168 5728 327 249 132 72 chr12 135747968 135748225 -8038230 + MIR SINE MIR 3 261 -1 1771 163 0 7 chr12 135748668 135748963 -8037492 + AluJb SINE Alu 1 293 -19 636 288 73 15 chr12 135749776 135750050 -8036405 + MER46C DNA MER2_type 6 295 -43 2523 223 87 31 chr12 135750218 135750409 -8036046 + L1ME1 LINE L1 5382 5561 -605 1935 119 14 3 chr12 135750409 135750702 -8035753 - AluSq SINE Alu -7 306 11 2523 223 87 31 chr12 135750702 135751002 -8035453 + L1ME1 LINE L1 5561 5843 -323 2943 74 0 3 chr12 135751002 135751367 -8035088 + THE1B LTR MaLR 1 364 0 2523 223 87 31 chr12 135751367 135751614 -8034841 + L1ME1 LINE L1 5843 6162 -4 397 223 82 92 chr12 135751803 135752095 -8034360 - L1MC4a LINE L1 -1822 5986 5698 2046 115 3 0 chr12 135752104 135752399 -8034056 + AluSq SINE Alu 17 312 -1 1867 122 0 4 chr12 135752444 135752737 -8033718 - AluSx SINE Alu 0 308 17 271 247 52 41 chr12 135752763 135752860 -8033595 + MIR SINE MIR 139 236 -26 361 292 50 8 chr12 135753284 135753404 -8033051 - L1MC4a LINE L1 -2110 5698 5574 1907 131 112 7 chr12 135753424 135753729 -8032726 + MER1B DNA MER1_type 1 337 0 462 18 0 0 chr12 135754603 135754658 -8031797 + (TG)n Simple_repeat Simple_repeat 2 56 0 275 300 171 45 chr12 135755697 135756411 -8030044 + L2 LINE L2 1761 2564 -750 1551 221 40 62 chr12 135756484 135756964 -8029491 - LTR55 LTR ERV -79 469 1 241 304 152 32 chr12 135756997 135757306 -8029149 + L2 LINE L2 2631 2976 -338 917 221 160 17 chr12 135757374 135757668 -8028787 - MLT1C LTR MaLR -64 403 68 265 281 66 41 chr12 135757797 135757918 -8028537 + L2 LINE L2 3170 3293 -20 1452 222 52 27 chr12 135757921 135758286 -8028169 + MLT1A2 LTR MaLR 1 374 0 439 332 86 22 chr12 135759333 135759565 -8026890 + L1ME LINE L1 5266 5512 -609 236 213 98 0 chr12 135759566 135759627 -8026828 + L1ME LINE L1 5560 5626 -495 817 142 69 118 chr12 135759671 135759875 -8026580 + AluJo SINE Alu 1 194 -118 505 240 59 95 chr12 135760548 135760698 -8025757 + MIR SINE MIR 21 162 -100 1271 178 62 22 chr12 135760698 135760973 -8025482 - AluJb SINE Alu -26 286 1 505 240 59 95 chr12 135760973 135761043 -8025412 + MIR SINE MIR 162 233 -29 196 305 0 17 chr12 135761134 135761193 -8025262 + MIR SINE MIR 192 249 -13 306 0 0 0 chr12 135761513 135761547 -8024908 + (T)n Simple_repeat Simple_repeat 1 34 0 1341 198 57 72 chr12 135761884 135762358 -8024097 - MLT1C LTR MaLR 0 467 1 573 261 103 90 chr12 135762490 135762800 -8023655 - MER102b DNA MER1_type -27 314 1 4755 193 32 20 chr12 135762870 135763897 -8022558 - MER45B DNA AcHobo 0 1040 2 671 267 105 33 chr12 135764219 135764552 -8021903 + MLT1K LTR MaLR 11 367 -221 21 36 0 0 chr12 135764603 135764631 -8021824 + AT_rich Low_complexity Low_complexity 1 28 0 2020 129 0 0 chr12 135764631 135764925 -8021530 + AluSx SINE Alu 1 294 -18 901 294 43 38 chr12 135764932 135765330 -8021125 - L1ME1 LINE L1 -28 6138 5739 243 109 65 43 chr12 135765343 135765389 -8021066 + MLT1K LTR MaLR 435 481 -107 272 343 38 0 chr12 135765647 135765752 -8020703 - MIR SINE MIR -117 145 37 500 282 77 17 chr12 135766195 135766376 -8020079 - MLT1J2 LTR MaLR -19 431 240 316 309 90 27 chr12 135766716 135766972 -8019483 - HAL1 LINE L1 -11 2496 2225 229 286 0 0 chr12 135767036 135767099 -8019356 - L2 LINE L2 0 3272 3210 262 263 40 0 chr12 135767109 135767185 -8019270 - MLT1J LTR MaLR -2 509 431 1597 147 45 0 chr12 135768104 135768370 -8018085 - MLT1B LTR MaLR 0 390 113 767 184 0 7 chr12 135768718 135768854 -8017601 - MLT1B LTR MaLR -255 135 1 1034 235 39 39 chr12 135770065 135770320 -8016135 + MIR SINE MIR 2 256 -6 274 284 209 15 chr12 135770603 135770737 -8015718 + MER5B DNA MER1_type 19 178 0 349 287 74 8 chr12 135771213 135771335 -8015120 + MIR SINE MIR 15 144 -118 645 211 88 44 chr12 135771336 135771563 -8014892 + LTR50 LTR ERVL 1 237 -558 288 267 59 20 chr12 135772520 135772621 -8013834 + MIR SINE MIR 86 190 -72 441 283 102 44 chr12 135772929 135773134 -8013321 - L2 LINE L2 -3 3310 3094 1356 220 59 82 chr12 135773142 135773615 -8012840 - LTR33A LTR ERVL 0 523 62 636 243 87 37 chr12 135775768 135776068 -8010387 - L1ME4a LINE L1 -239 5882 5568 183 100 0 0 chr12 135776942 135776972 -8009483 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 796 232 30 63 chr12 135777205 135777252 -8009203 - MIR SINE MIR -16 246 199 1614 162 7 39 chr12 135777252 135777561 -8008894 - AluJb SINE Alu -12 300 2 796 232 30 63 chr12 135777561 135777750 -8008705 - MIR SINE MIR -63 199 18 304 223 27 62 chr12 135777756 135777868 -8008587 - L1ME1 LINE L1 -392 5729 5622 3154 181 73 7 chr12 135779368 135779988 -8006467 - MER67B LTR ERV1 0 661 1 852 219 114 0 chr12 135780047 135780248 -8006207 - MER58A DNA MER1_type 0 224 1 914 256 118 4 chr12 135780420 135780941 -8005514 - LTR50 LTR ERVL -9 786 120 889 241 31 5 chr12 135781385 135781580 -8004875 + MIR SINE MIR 63 262 0 336 227 97 60 chr12 135782118 135782303 -8004152 - MER117 DNA MER1_type -5 192 1 687 272 79 18 chr12 135782427 135782655 -8003800 - MIR SINE MIR -5 257 16 526 263 156 81 chr12 135783173 135783481 -8002974 + MER102b DNA MER1_type 11 341 0 289 160 0 0 chr12 135783645 135783695 -8002760 + MIR SINE MIR 181 230 -32 462 351 31 18 chr12 135783768 135783993 -8002462 - MIR SINE MIR -27 235 8 1693 198 76 7 chr12 135784111 135784540 -8001915 - MER89 LTR ERV1 0 559 2 895 181 7 0 chr12 135785142 135785291 -8001164 + MIR SINE MIR 1 150 -112 723 273 114 15 chr12 135785365 135785761 -8000694 + L2 LINE L2 2422 2948 -366 685 273 80 16 chr12 135785772 135786021 -8000434 + L2 LINE L2 3049 3313 0 924 275 84 36 chr12 135786309 135786775 -7999680 + MER113 DNA MER1_type? 30 517 -4 1965 220 136 19 chr12 135787202 135787821 -7998634 - L1MC4a LINE L1 0 7808 7118 1784 147 11 0 chr12 135787908 135788180 -7998275 + LTR64 LTR ERVK 1 275 -283 226 121 0 0 chr12 135788182 135788215 -7998240 + LTR64 LTR ERVK 254 286 -272 2310 202 62 6 chr12 135788597 135788723 -7997732 + LTR64 LTR ERVK 1 119 -394 2296 86 0 0 chr12 135788723 135789028 -7997427 + AluSc SINE Alu 1 305 0 2310 202 62 6 chr12 135789028 135789386 -7997069 + LTR64 LTR ERVK 119 513 0 473 306 27 0 chr12 135789796 135789943 -7996512 + MIR SINE MIR 46 196 -66 460 233 25 8 chr12 135790187 135790307 -7996148 - MIR SINE MIR -117 145 24 182 326 93 39 chr12 135790879 135791008 -7995447 - MIR SINE MIR -8 254 119 1389 204 7 24 chr12 135791374 135791668 -7994787 - L1MB1 LINE L1 0 6168 5880 227 269 13 39 chr12 135791898 135791976 -7994479 - L1MB1 LINE L1 -2045 5763 5688 269 297 14 0 chr12 135792019 135792093 -7994362 + MIR SINE MIR 2 76 -186 451 219 10 0 chr12 135792158 135792254 -7994201 + LTR33 LTR ERVL 368 464 -57 427 317 65 22 chr12 135792531 135792761 -7993694 - MIR SINE MIR -16 246 7 280 246 50 86 chr12 135793229 135793449 -7993006 - L1MC4 LINE L1 -1 8041 7830 1295 219 21 12 chr12 135793475 135793808 -7992647 - L1MB1 LINE L1 -1538 4608 4273 2699 245 52 108 chr12 135793817 135794670 -7991785 - L1ME LINE L1 -3890 2190 1291 3810 113 17 27 chr12 135794670 135795301 -7991154 - L1MA4 LINE L1 -16 6284 5660 2699 245 52 108 chr12 135795301 135796710 -7989745 - L1ME LINE L1 -4789 1291 69 611 226 104 32 chr12 135796756 135797101 -7989354 - L1MEc LINE L1 -4122 2274 1905 1394 223 27 6 chr12 135797106 135797438 -7989017 - L1MC4 LINE L1 -472 7570 7232 338 299 82 82 chr12 135797485 135797716 -7988739 + LTR33A LTR ERVL 99 329 -194 4472 48 0 4 chr12 135797803 135798342 -7988113 - L1PA5 LINE L1 -6 6148 5612 500 294 90 53 chr12 135798342 135798695 -7987760 - L2 LINE L2 -1065 2249 1877 2265 99 3 0 chr12 135798695 135798988 -7987467 + AluSx SINE Alu 1 294 -18 500 294 90 53 chr12 135798988 135799045 -7987410 - L2 LINE L2 -1437 1877 1824 463 255 99 111 chr12 135799069 135799501 -7986954 - MLT1J LTR MaLR -11 500 73 824 133 0 37 chr12 135799501 135799636 -7986819 - FLAM_C SINE Alu -3 130 1 463 255 99 111 chr12 135799636 135799709 -7986746 - MLT1J LTR MaLR -438 73 1 1584 204 118 61 chr12 135799769 135800293 -7986162 - MLT2B3 LTR ERVL 0 554 1 651 282 144 34 chr12 135801755 135802138 -7984317 + L2 LINE L2 2870 3294 -19 1082 164 53 8 chr12 135802195 135802532 -7983923 + MLT1B LTR MaLR 1 379 -11 2037 132 0 0 chr12 135802721 135803022 -7983433 - AluSx SINE Alu 0 301 1 1033 234 52 66 chr12 135804927 135805368 -7981087 - MER113 DNA MER1_type? -80 441 7 201 272 130 0 chr12 135805449 135805541 -7980914 + MIR SINE MIR 62 165 -97 222 176 81 54 chr12 135805942 135806016 -7980439 + MER5A DNA MER1_type 63 138 -51 381 221 0 79 chr12 135806415 135806542 -7979913 + MIR SINE MIR 114 230 -32 195 337 24 0 chr12 135807171 135807254 -7979201 + MIR SINE MIR 1 85 -177 666 299 66 61 chr12 135807260 135807652 -7978803 - MLT1J LTR MaLR -2 509 116 1367 164 90 155 chr12 135808055 135808591 -7977864 + MLT1D LTR MaLR 3 503 -2 1465 219 106 16 chr12 135808967 135809391 -7977064 - MLT1C LTR MaLR 0 467 6 225 200 0 0 chr12 135809625 135809665 -7976790 + LTR33 LTR ERVL 127 166 -355 287 286 89 0 chr12 135809733 135809845 -7976610 + LTR33A LTR ERVL 263 384 -139 306 286 183 25 chr12 135810206 135810447 -7976008 - LTR16C LTR ERVL -23 468 190 255 259 0 0 chr12 135810599 135810684 -7975771 + (TG)n Simple_repeat Simple_repeat 2 86 0 209 275 115 10 chr12 135811389 135811493 -7974962 + MIR SINE MIR 11 133 -75 386 288 23 34 chr12 135812169 135812346 -7974109 + MER113 DNA MER1_type? 1 175 -346 1112 240 51 63 chr12 135812496 135812872 -7973583 + MER113 DNA MER1_type? 36 408 -113 2155 98 18 4 chr12 135812872 135813173 -7973282 - AluSx SINE Alu 0 305 1 1112 240 51 63 chr12 135813173 135813285 -7973170 + MER113 DNA MER1_type? 408 520 -1 2070 148 24 42 chr12 135813324 135813581 -7972874 - L1MA7 LINE L1 -1 6290 6043 2218 126 0 3 chr12 135813581 135813882 -7972573 - AluSx SINE Alu -12 300 1 2070 148 24 42 chr12 135813882 135814050 -7972405 - L1MA7 LINE L1 -248 6043 5873 244 273 218 0 chr12 135814733 135814843 -7971612 - L2 LINE L2 0 3313 3180 1875 151 18 0 chr12 135814907 135815218 -7971237 - AluJb SINE Alu 0 316 1 194 313 0 0 chr12 135815609 135815676 -7970779 - L2 LINE L2 -357 2956 2890 191 274 65 0 chr12 135815772 135815834 -7970621 - L2 LINE L2 -582 2732 2667 180 0 0 0 chr12 135816727 135816747 -7969708 + (TCCA)n Simple_repeat Simple_repeat 2 21 0 205 325 13 0 chr12 135816987 135817064 -7969391 + L3b LINE CR1 1391 1468 -115 2229 128 0 3 chr12 135817078 135817390 -7969065 + AluSp SINE Alu 3 313 0 373 315 24 0 chr12 135817569 135817696 -7968759 - MER117 DNA MER1_type -67 130 1 426 20 0 0 chr12 135817944 135817995 -7968460 + (CA)n Simple_repeat Simple_repeat 2 52 0 460 251 57 52 chr12 135818021 135818232 -7968223 - L2 LINE L2 -55 3258 3047 306 132 0 0 chr12 135818250 135818303 -7968152 + (TCCCC)n Simple_repeat Simple_repeat 2 54 0 216 170 19 38 chr12 135818305 135818358 -7968097 + CT-rich Low_complexity Low_complexity 1 52 0 657 223 134 20 chr12 135818393 135818595 -7967860 + MIR SINE MIR 31 255 -7 642 271 24 5 chr12 135818816 135819023 -7967432 - L1ME3A LINE L1 -5 6165 5955 1060 239 138 12 chr12 135819027 135819354 -7967101 + L1ME3A LINE L1 5602 5969 -193 2126 197 126 18 chr12 135819371 135819879 -7966576 + MLT1F1 LTR MaLR 1 563 -4 306 0 0 0 chr12 135819971 135820005 -7966450 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr12 135820680 135820706 -7965749 + AT_rich Low_complexity Low_complexity 1 26 0 1709 169 3 10 chr12 135820707 135820997 -7965458 - AluJb SINE Alu -24 288 1 592 300 21 25 chr12 135821254 135821494 -7964961 - MIR SINE MIR -11 251 13 240 236 7 160 chr12 135822400 135822544 -7963911 - L2 LINE L2 -222 3050 2929 326 214 146 10 chr12 135822545 135822648 -7963807 - LTR33 LTR ERVL -3 518 402 795 264 61 30 chr12 135822754 135822985 -7963470 - LTR33 LTR ERVL -277 244 7 705 189 92 0 chr12 135823078 135823231 -7963224 - MIR SINE MIR -73 189 23 444 275 16 31 chr12 135823526 135823685 -7962770 - L2 LINE L2 -936 2378 2221 1628 174 10 17 chr12 135823685 135823983 -7962472 + L1PB4 LINE L1 5858 6153 -3 444 275 16 31 chr12 135823983 135824016 -7962439 - L2 LINE L2 -1093 2221 2189 22 0 0 0 chr12 135824337 135824359 -7962096 + AT_rich Low_complexity Low_complexity 1 22 0 676 237 155 71 chr12 135824606 135825044 -7961411 - MLT1K LTR MaLR 0 476 2 724 184 0 78 chr12 135825343 135825433 -7961022 - MIR SINE MIR -21 241 169 1701 164 25 11 chr12 135825433 135825739 -7960716 - AluJo SINE Alu 0 310 1 724 184 0 78 chr12 135825739 135825826 -7960629 - MIR SINE MIR -93 169 77 1968 106 4 4 chr12 135825905 135826179 -7960276 - AluY SINE Alu -15 296 23 417 262 24 89 chr12 135827101 135827269 -7959186 - MER20B DNA MER1_type -626 157 1 252 246 15 31 chr12 135827269 135827332 -7959123 - Charlie8 DNA MER1_type -21 2396 2335 619 253 124 0 chr12 135827458 135827652 -7958803 - Charlie8 DNA MER1_type -2141 276 59 2251 251 28 14 chr12 135827662 135828232 -7958223 - MLT1E LTR MaLR -7 586 9 519 17 0 0 chr12 135828390 135828450 -7958005 + (TG)n Simple_repeat Simple_repeat 2 61 0 1023 179 6 6 chr12 135828462 135828635 -7957820 + MLT1C LTR MaLR 295 467 0 350 266 21 42 chr12 135829863 135830006 -7956449 + MER5A DNA MER1_type 50 189 0 1165 261 43 24 chr12 135830145 135830566 -7955889 - L2 LINE L2 -5 3308 2880 195 42 0 0 chr12 135831107 135831131 -7955324 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 1871 136 48 0 chr12 135831136 135831408 -7955047 - AluSx SINE Alu -27 285 1 2471 195 16 40 chr12 135831823 135832376 -7954079 + LTR55 LTR ERV 1 540 -8 569 296 134 34 chr12 135832655 135833006 -7953449 + MLT1K LTR MaLR 24 409 -179 694 267 41 13 chr12 135833464 135833701 -7952754 - MIR SINE MIR 0 262 20 233 259 0 19 chr12 135833938 135833992 -7952463 - MIR SINE MIR -51 211 159 1387 217 125 38 chr12 135833996 135834420 -7952035 - MLT1C LTR MaLR 0 467 7 375 276 32 0 chr12 135834606 135834729 -7951726 + MIR SINE MIR 84 210 -52 2701 184 64 49 chr12 135835676 135836222 -7950233 - MER77 LTR ERV1 -6 599 54 1400 292 49 15 chr12 135836823 135837205 -7949250 - L1ME3A LINE L1 -7 6155 5732 1682 185 54 14 chr12 135837205 135837556 -7948899 + MLT1A1 LTR MaLR 1 365 0 1400 292 49 15 chr12 135837556 135837854 -7948601 - L1ME3A LINE L1 -430 5732 5446 257 73 0 24 chr12 135837899 135837940 -7948515 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1233 0 55 15 chr12 135838503 135839073 -7947382 + (GAGTG)n Simple_repeat Simple_repeat 1 592 0 2075 66 0 15 chr12 135839115 135839388 -7947067 + L1PA7 LINE L1 5884 6152 -2 265 250 14 0 chr12 135840351 135840423 -7946032 + MIR SINE MIR 30 102 -106 4807 165 34 18 chr12 135841195 135842166 -7944289 - L1MB5 LINE L1 0 6174 5190 866 310 51 22 chr12 135844801 135845172 -7941283 - MLT1L LTR MaLR -8 607 226 237 174 0 116 chr12 135845270 135845339 -7941116 - MLT1L LTR MaLR -554 61 1 682 281 116 39 chr12 135845476 135845761 -7940694 - MLT1K LTR MaLR -91 497 191 21 36 0 0 chr12 135846636 135846664 -7939791 + AT_rich Low_complexity Low_complexity 1 28 0 2747 97 8 0 chr12 135847128 135847489 -7938966 - THE1B LTR MaLR 0 364 1 11436 99 6 30 chr12 135847489 135849109 -7937346 - THE1B-int LTR MaLR 0 1580 1 2818 99 0 0 chr12 135849109 135849473 -7936982 - THE1B LTR MaLR 0 364 1 421 252 133 64 chr12 135849983 135850201 -7936254 - MIR SINE MIR -22 240 8 1253 241 77 41 chr12 135850373 135850812 -7935643 + MLT1C LTR MaLR 8 462 -5 274 306 100 38 chr12 135850858 135851018 -7935437 - MER5B DNA MER1_type -8 170 1 369 267 87 61 chr12 135851486 135851763 -7934692 - L1ME4a LINE L1 -4 6117 5834 1038 157 150 143 chr12 135852571 135853005 -7933450 - MER31B LTR ERV1 -21 445 9 481 254 66 16 chr12 135853006 135853128 -7933327 + MLT1I LTR MaLR 282 409 0 6004 133 41 15 chr12 135853147 135854225 -7932230 - L1MC2 LINE L1 -2 6342 5185 289 299 0 0 chr12 135854801 135854868 -7931587 - L2 LINE L2 -214 3058 2992 619 245 106 0 chr12 135855123 135855331 -7931124 - MIR SINE MIR -9 253 24 291 157 0 0 chr12 135855319 135855370 -7931085 + L2 LINE L2 3256 3306 -7 * 1702 169 20 14 chr12 135855860 135856155 -7930300 - AluJo SINE Alu -15 297 1 238 175 18 18 chr12 135856240 135856297 -7930158 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 213 120 0 60 chr12 135856300 135856350 -7930105 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 3349 152 53 61 chr12 135856834 135857063 -7929392 - L1MC3 LINE L1 -1 7784 7555 2106 138 0 16 chr12 135857063 135857367 -7929088 - AluSx SINE Alu -13 299 1 3349 152 53 61 chr12 135857367 135857855 -7928600 - L1MC3 LINE L1 -230 7555 7073 228 233 47 58 chr12 135857889 135857975 -7928480 + L2 LINE L2 3149 3233 -39 286 324 80 9 chr12 135858199 135858412 -7928043 - L2 LINE L2 -164 3149 2922 601 296 180 9 chr12 135858522 135859116 -7927339 - L2 LINE L2 -5 3308 2606 344 291 10 0 chr12 135860217 135860320 -7926135 + L1MC4 LINE L1 6598 6701 -1341 372 164 0 0 chr12 135860323 135860390 -7926065 + (TA)n Simple_repeat Simple_repeat 2 68 0 393 22 0 0 chr12 135860390 135860436 -7926019 + (GA)n Simple_repeat Simple_repeat 2 47 0 3931 60 21 2 chr12 135861386 135861915 -7924540 - L1PA5 LINE L1 -4 6150 5612 510 304 85 49 chr12 135861915 135862268 -7924187 - L2 LINE L2 -1065 2249 1877 2265 99 3 0 chr12 135862268 135862561 -7923894 + AluSx SINE Alu 1 294 -18 510 304 85 49 chr12 135862561 135862618 -7923837 - L2 LINE L2 -1437 1877 1824 415 218 41 84 chr12 135862996 135863318 -7923137 - MER31B LTR ERV1 -26 440 80 274 170 33 0 chr12 135863361 135863426 -7923029 - MER31B LTR ERV1 -415 51 9 481 254 66 16 chr12 135863427 135863549 -7922906 + MLT1I LTR MaLR 282 409 0 6024 134 41 15 chr12 135863568 135864646 -7921809 - L1MC2 LINE L1 -2 6342 5185 289 299 0 0 chr12 135865222 135865289 -7921166 - L2 LINE L2 -214 3058 2992 634 240 106 0 chr12 135865544 135865752 -7920703 - MIR SINE MIR -9 253 24 291 157 0 0 chr12 135865740 135865791 -7920664 + L2 LINE L2 3256 3306 -7 * 1728 166 20 14 chr12 135866281 135866577 -7919878 - AluJo SINE Alu -14 298 1 238 175 18 18 chr12 135866661 135866718 -7919737 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 213 120 0 60 chr12 135866721 135866771 -7919684 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 3385 149 53 61 chr12 135867255 135867484 -7918971 - L1MC3 LINE L1 -1 7784 7555 2130 131 0 20 chr12 135867484 135867789 -7918666 - AluSx SINE Alu -13 299 1 3385 149 53 61 chr12 135867789 135868277 -7918178 - L1MC3 LINE L1 -230 7555 7073 228 233 47 58 chr12 135868311 135868397 -7918058 + L2 LINE L2 3149 3233 -39 286 324 80 9 chr12 135868621 135868834 -7917621 - L2 LINE L2 -164 3149 2922 601 296 180 9 chr12 135868944 135869538 -7916917 - L2 LINE L2 -5 3308 2606 963 147 0 0 chr12 135870650 135870813 -7915642 + (TA)n Simple_repeat Simple_repeat 1 163 0 393 22 0 0 chr12 135870812 135870858 -7915597 + (GA)n Simple_repeat Simple_repeat 2 47 0 * 1052 30 1 8 chr12 135871797 135871808 -7914647 + L1P1 LINE L1 5698 5708 -447 1408 13 0 0 chr12 135871808 135871966 -7914489 - L1PA2 LINE L1 -4 6151 5994 1052 30 1 8 chr12 135871966 135872097 -7914358 + L1P1 LINE L1 5708 5840 -315 1928 241 63 4 chr12 135872234 135872711 -7913744 - MLT1D LTR MaLR 0 505 1 855 254 114 22 chr12 135872744 135873149 -7913306 + LTR33A LTR ERVL 82 523 0 458 293 152 17 chr12 135873800 135874209 -7912246 - L2 LINE L2 0 3313 2850 2145 164 29 5 chr12 135874677 135875062 -7911393 + MLT1C LTR MaLR 74 467 0 1639 128 4 0 chr12 135875621 135875870 -7910585 - L1MB5 LINE L1 -421 5753 5504 1917 197 47 3 chr12 135875872 135876258 -7910197 + L1MB5 LINE L1 5763 6165 -9 440 341 9 0 chr12 135877063 135877291 -7909164 - L1ME3A LINE L1 -215 5947 5712 6272 159 3 13 chr12 135877328 135878455 -7908000 - L1P LINE L1 -1379 4767 3652 24 0 0 0 chr12 135879046 135879070 -7907385 + AT_rich Low_complexity Low_complexity 1 24 0 304 290 124 0 chr12 135879083 135879228 -7907227 + Charlie8 DNA MER1_type 115 277 -2140 685 250 16 0 chr12 135879319 135879503 -7906952 + MIR SINE MIR 70 256 -6 932 262 59 9 chr12 135879508 135879832 -7906623 + Charlie8 DNA MER1_type 350 689 -1728 186 319 139 18 chr12 135879983 135880149 -7906306 + MIR SINE MIR 23 208 -54 643 276 40 22 chr12 135880685 135880913 -7905542 + MIR SINE MIR 18 249 -13 21 0 0 0 chr12 135882074 135882095 -7904360 + AT_rich Low_complexity Low_complexity 1 21 0 438 269 153 19 chr12 135882620 135882928 -7903527 - L1ME4a LINE L1 -212 5909 5561 1475 206 95 16 chr12 135882942 135883310 -7903145 + MLT2C1 LTR ERVL 1 397 0 274 235 157 10 chr12 135883552 135883654 -7902801 + MIR SINE MIR 48 164 -98 596 266 26 13 chr12 135883657 135883811 -7902644 + LTR41 LTR ERVL 5 160 -613 367 235 86 72 chr12 135884254 135884475 -7901980 + LTR41 LTR ERVL 513 736 -37 301 225 135 0 chr12 135884498 135884587 -7901868 + MIR SINE MIR 162 262 0 457 306 56 15 chr12 135884777 135884973 -7901482 + MIR SINE MIR 49 252 -10 585 282 104 28 chr12 135885234 135886206 -7900249 - L1M2 LINE L1 -3873 2848 1733 2693 208 90 49 chr12 135886217 135886277 -7900178 - L1ME1 LINE L1 -9 6157 6101 1998 107 63 0 chr12 135886277 135886548 -7899907 + AluSq SINE Alu 9 296 -17 2693 208 90 49 chr12 135886548 135887250 -7899205 - L1ME1 LINE L1 -65 6101 5358 2406 80 0 3 chr12 135887250 135887552 -7898903 - AluY SINE Alu -10 301 1 2693 208 90 49 chr12 135887552 135887597 -7898858 - L1ME1 LINE L1 -808 5358 5316 921 241 115 0 chr12 135887581 135887930 -7898525 - L1ME1 LINE L1 -2689 3457 3069 * 380 219 18 2 chr12 135887977 135888060 -7898395 - MLT1C LTR MaLR -48 419 261 233 191 0 0 chr12 135888046 135888088 -7898367 + MLT1K LTR MaLR 125 166 -224 * 3680 237 45 89 chr12 135888094 135889270 -7897185 + L1MC4 LINE L1 6395 7472 -570 192 77 0 0 chr12 135889270 135889296 -7897159 + (TG)n Simple_repeat Simple_repeat 2 27 0 3680 237 45 89 chr12 135889296 135889842 -7896613 + L1MC4 LINE L1 7472 8041 -1 1396 161 35 15 chr12 135890363 135890623 -7895832 + MSTB LTR MaLR 161 425 -1 352 243 0 0 chr12 135890624 135890698 -7895757 - L2 LINE L2 -1038 2276 2203 185 309 55 0 chr12 135891406 135891461 -7894994 - L2 LINE L2 -93 3179 3122 289 293 116 67 chr12 135891566 135891791 -7894664 + MLT1K LTR MaLR 196 431 -157 297 184 11 23 chr12 135891915 135892002 -7894453 + CT-rich Low_complexity Low_complexity 3 88 0 3665 185 15 8 chr12 135892140 135892860 -7893595 - L1MB5 LINE L1 -1 6173 5449 3086 178 45 8 chr12 135893050 135893811 -7892644 - L1MB5 LINE L1 -1230 4916 3965 261 245 85 38 chr12 135894929 135895035 -7891420 + LTR16B LTR ERVL 321 431 -33 389 305 119 0 chr12 135896295 135896472 -7889983 - MIR SINE MIR -48 214 17 235 370 0 0 chr12 135896517 135896598 -7889857 + L2 LINE L2 3233 3313 0 1632 214 55 12 chr12 135897099 135897444 -7889011 + MLT1A1 LTR MaLR 1 360 -5 649 311 37 60 chr12 135897644 135898078 -7888377 + L2 LINE L2 2849 3272 0 431 171 0 73 chr12 135898555 135898800 -7887655 + CT-rich Low_complexity Low_complexity 1 227 0 296 48 24 0 chr12 135898801 135898843 -7887612 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 1576 181 26 0 chr12 135898860 135899131 -7887324 - AluJo SINE Alu -33 279 2 595 244 77 37 chr12 135899186 135899432 -7887023 - MLT1K LTR MaLR -12 576 321 23 0 0 0 chr12 135899808 135899831 -7886624 + AT_rich Low_complexity Low_complexity 1 23 0 3563 63 23 0 chr12 135899903 135900346 -7886109 + MLT2A2 LTR ERVL 1 453 0 2499 153 77 68 chr12 135900707 135901308 -7885147 - L1MB5 LINE L1 -8 6166 5561 36818 66 6 6 chr12 135902246 135907793 -7878662 + L1PA6 LINE L1 606 6149 -5 966 117 0 0 chr12 135908607 135908735 -7877720 - AluSq/x SINE Alu -180 133 6 1405 158 122 20 chr12 135909187 135909441 -7877014 - AluJo SINE Alu -28 284 5 401 265 0 0 chr12 135910877 135910975 -7875480 + MIR SINE MIR 5 102 -160 398 129 14 57 chr12 135911897 135911967 -7874488 - MLT1J2 LTR MaLR 0 450 384 532 285 87 0 chr12 135912115 135912287 -7874168 - MLT1J2 LTR MaLR -248 202 16 244 298 29 0 chr12 135912625 135912729 -7873726 + L1M4 LINE L1 3942 4048 -2098 484 246 121 5 chr12 135912928 135913127 -7873328 + L1M4 LINE L1 3942 4163 -1983 519 242 6 68 chr12 135913158 135913211 -7873244 - MLT1H LTR MaLR -25 524 469 2345 127 28 19 chr12 135913211 135913572 -7872883 + THE1B LTR MaLR 1 364 0 519 242 6 68 chr12 135913572 135913679 -7872776 - MLT1H LTR MaLR -80 469 374 257 277 0 0 chr12 135913676 135913741 -7872714 + MLT1H LTR MaLR 485 549 0 * 383 267 30 0 chr12 135914039 135914175 -7872280 - MIR3 SINE MIR -3 205 66 42 20 0 0 chr12 135914190 135914239 -7872216 + AT_rich Low_complexity Low_complexity 1 49 0 1657 171 13 41 chr12 135914240 135914555 -7871900 - AluJo SINE Alu -6 306 1 567 275 124 9 chr12 135914989 135915207 -7871248 - MIR SINE MIR 0 262 20 2602 193 78 17 chr12 135915229 135915297 -7871158 + MLT1F1 LTR MaLR 1 63 -504 2368 87 3 13 chr12 135915297 135915609 -7870846 - AluY SINE Alu -2 309 1 2602 193 78 17 chr12 135915609 135916063 -7870392 + MLT1F1 LTR MaLR 63 555 -12 69 13 0 0 chr12 135916069 135916145 -7870310 + AT_rich Low_complexity Low_complexity 1 76 0 275 119 0 0 chr12 135916145 135916187 -7870268 - FLAM SINE Alu -5 128 87 223 266 53 43 chr12 135917640 135917734 -7868721 - L2 LINE L2 -37 3235 3141 465 196 20 10 chr12 135918156 135918258 -7868197 - MLT2F LTR ERVL -537 126 24 180 111 0 0 chr12 135919618 135919645 -7866810 + (TCC)n Simple_repeat Simple_repeat 1 27 0 455 317 66 11 chr12 135920198 135920381 -7866074 + LTR33 LTR ERVL 229 421 -100 301 250 177 65 chr12 135921363 135921611 -7864844 - MLT1K LTR MaLR -22 566 291 281 375 7 7 chr12 135922825 135922977 -7863478 - MLT1I LTR MaLR -159 250 99 7560 35 28 0 chr12 135924161 135925034 -7861421 + MER11D LTR ERVK 1 897 0 742 228 13 57 chr12 135925098 135925326 -7861129 - MER20 DNA MER1_type 0 219 2 250 322 82 56 chr12 135925362 135925812 -7860643 - MER89-int LTR ERV1 -3269 3532 3071 706 142 16 120 chr12 135926024 135926207 -7860248 - MER53 DNA DNA 0 189 26 1979 68 8 0 chr12 135926210 135926461 -7859994 - L1PA10 LINE L1 -4 6164 5912 305 358 0 0 chr12 135926805 135926900 -7859555 + (TG)n Simple_repeat Simple_repeat 2 96 0 277 228 235 25 chr12 135926936 135927098 -7859357 + L2 LINE L2 2926 3121 -192 717 205 80 35 chr12 135927109 135927309 -7859146 - MLT1I LTR MaLR -5 404 196 415 181 174 43 chr12 135927510 135927648 -7858807 + L2 LINE L2 3158 3313 0 2278 235 92 51 chr12 135929430 135930255 -7856200 + L1ME1 LINE L1 6 795 -5305 2216 113 3 0 chr12 135930255 135930555 -7855900 + AluSq SINE Alu 1 301 -12 2278 235 92 51 chr12 135930555 135931360 -7855095 + L1ME1 LINE L1 795 6085 -15 24 77 0 0 chr12 135931364 135931416 -7855039 + AT_rich Low_complexity Low_complexity 1 52 0 1624 255 50 28 chr12 135932084 135932984 -7853471 - L2 LINE L2 0 3313 2392 2213 121 0 16 chr12 135933607 135933922 -7852533 - AluSx SINE Alu -2 310 1 2124 177 50 5 chr12 135935730 135936170 -7850285 - L1MB7 LINE L1 -2 6182 5723 2673 48 0 6 chr12 135936407 135936718 -7849737 + AluY SINE Alu 1 309 -2 470 284 101 72 chr12 135936988 135937294 -7849161 - MER102a DNA MER1_type -15 315 1 180 0 0 0 chr12 135938049 135938069 -7848386 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 435 295 33 123 chr12 135938069 135938395 -7848060 - L2 LINE L2 -7 3301 3005 201 243 0 0 chr12 135938476 135938513 -7847942 - L2 LINE L2 0 3272 3236 257 116 0 87 chr12 135938517 135938586 -7847869 + L2 LINE L2 2995 3057 -215 28 29 0 0 chr12 135938625 135938660 -7847795 + AT_rich Low_complexity Low_complexity 1 35 0 275 281 135 0 chr12 135938757 135938846 -7847609 + L2 LINE L2 3210 3310 -3 363 317 24 0 chr12 135939100 135939223 -7847232 - L2 LINE L2 -8 3305 3180 186 43 0 0 chr12 135939713 135939736 -7846719 + (TCC)n Simple_repeat Simple_repeat 3 25 0 488 270 4 22 chr12 135939960 135940488 -7845967 + (CA)n Simple_repeat Simple_repeat 1 518 0 185 238 10 0 chr12 135940510 135940611 -7845844 + (CA)n Simple_repeat Simple_repeat 1 102 0 329 304 0 7 chr12 135940626 135940761 -7845694 + (CA)n Simple_repeat Simple_repeat 1 134 0 242 229 5 28 chr12 135940808 135941021 -7845434 + (CA)n Simple_repeat Simple_repeat 1 208 0 1839 97 26 94 chr12 135941991 135942330 -7844125 - AluYb8 SINE Alu -2 316 1 264 271 29 93 chr12 135942543 135942683 -7843772 - MIR SINE MIR -59 203 73 689 195 12 35 chr12 135942685 135942854 -7843601 + MER3 DNA MER1_type 39 203 -6 629 240 160 46 chr12 135945349 135945699 -7840756 + L2 LINE L2 2924 3313 0 606 141 23 8 chr12 135946047 135946175 -7840280 + CT-rich Low_complexity Low_complexity 5 134 0 719 254 96 37 chr12 135946290 135946644 -7839811 - LTR33A LTR ERVL -8 515 141 190 294 204 21 chr12 135946884 135947119 -7839336 + L2 LINE L2 2907 3184 -129 1437 218 197 62 chr12 135947125 135947801 -7838654 - LTR41 LTR ERVL -6 767 1 282 367 64 9 chr12 135947807 135947916 -7838539 + L2 LINE L2 3140 3254 -18 2377 162 74 13 chr12 135947981 135948455 -7838000 - MLT1D LTR MaLR -2 503 1 283 320 28 33 chr12 135948880 135949074 -7837381 + MIR SINE MIR 30 215 -47 744 280 42 8 chr12 135949259 135949498 -7836957 + MIR SINE MIR 15 261 -1 236 339 117 4 chr12 135949704 135949978 -7836477 - L2 LINE L2 -159 3113 2809 1077 188 43 120 chr12 135950111 135950504 -7835951 + MLT1A1 LTR MaLR 1 363 -2 270 238 50 106 chr12 135950586 135950746 -7835709 + MLT1L LTR MaLR 40 190 -425 668 203 4 0 chr12 135951666 135951904 -7834551 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 948 151 0 0 chr12 135951920 135952099 -7834356 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 544 168 16 0 chr12 135952111 135952236 -7834219 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 702 219 4 4 chr12 135952302 135952558 -7833897 + (TCCA)n Simple_repeat Simple_repeat 1 256 0 302 283 108 17 chr12 135953264 135953384 -7833071 - L2 LINE L2 -24 3289 3159 1077 164 28 0 chr12 135953384 135953561 -7832894 - Tigger2 DNA MER2_type -10 2708 2527 902 138 14 7 chr12 135953560 135953698 -7832757 - Charlie3 DNA MER1_type -8 2702 2564 * 273 168 58 36 chr12 135953698 135953835 -7832620 + CT-rich Low_complexity Low_complexity 4 143 0 1672 161 7 46 chr12 135953840 135954144 -7832311 - AluJb SINE Alu -20 292 1 564 152 0 10 chr12 135954694 135954793 -7831662 + FRAM SINE Alu 66 163 -13 358 304 53 58 chr12 135954875 135955046 -7831409 - L1MC4a LINE L1 -1923 5885 5716 207 69 0 0 chr12 135955049 135955078 -7831377 + (TC)n Simple_repeat Simple_repeat 1 29 0 1857 191 91 12 chr12 135955239 135955657 -7830798 - MLT1C LTR MaLR 0 467 17 1684 189 0 10 chr12 135955923 135956236 -7830219 - AluJo SINE Alu -2 310 1 2304 91 0 0 chr12 135957266 135957562 -7828893 - AluSx SINE Alu -16 296 1 236 242 205 68 chr12 135957830 135958020 -7828435 + MIR SINE MIR 37 252 -10 466 333 94 54 chr12 135958623 135958974 -7827481 - HAL1b LINE L1 0 1348 984 1729 163 3 3 chr12 135958982 135959265 -7827190 + AluJo SINE Alu 1 283 -29 191 290 10 0 chr12 135959397 135959497 -7826958 + (TTA)n Simple_repeat Simple_repeat 3 103 0 1042 170 57 0 chr12 135959550 135959744 -7826711 - MER3 DNA MER1_type -4 205 1 705 308 49 0 chr12 135961166 135961390 -7825065 + MIR SINE MIR 25 259 -3 803 193 0 0 chr12 135961474 135961614 -7824841 + MLT1D LTR MaLR 1 140 -365 789 209 6 13 chr12 135961811 135961969 -7824486 + MER8 DNA MER2_type 1 157 -82 381 135 0 0 chr12 135961957 135962009 -7824446 - Tigger2 DNA MER2_type -2660 58 7 * 639 245 31 12 chr12 135962505 135962668 -7823787 + MIR SINE MIR 5 170 -92 1246 330 61 19 chr12 135963533 135964339 -7822116 + L2 LINE L2 2384 3232 -81 2878 251 58 7 chr12 135964382 135965384 -7821071 - L1M4 LINE L1 -2775 3371 2319 1182 286 75 15 chr12 135965387 135966021 -7820434 + L2 LINE L2 2538 3301 -12 461 248 29 36 chr12 135966251 135966388 -7820067 + MER103 DNA DNA 10 145 -21 2351 50 0 23 chr12 135966501 135966803 -7819652 + AluY SINE Alu 17 311 0 2704 169 44 13 chr12 135967074 135967595 -7818860 - L1MB3 LINE L1 -3 6180 5644 270 210 126 101 chr12 135967782 135967901 -7818554 - MLT1K LTR MaLR -71 517 396 915 236 60 30 chr12 135967977 135968311 -7818144 - MER2 DNA MER2_type 0 344 1 534 91 13 0 chr12 135968327 135968404 -7818051 - L1P LINE L1 -1199 4947 4870 5050 82 27 4 chr12 135968404 135969095 -7817360 + L1PA10 LINE L1 5448 6156 -12 426 305 4 71 chr12 135969134 135969360 -7817095 - MLT1K LTR MaLR -375 213 3 270 224 19 93 chr12 135969446 135969553 -7816902 - L2 LINE L2 -415 2899 2801 845 290 102 16 chr12 135970199 135970668 -7815787 + MLT1K LTR MaLR 22 582 -6 3234 210 42 41 chr12 135970723 135970928 -7815527 - L1ME1 LINE L1 -10 6156 5953 2302 90 0 0 chr12 135970928 135971229 -7815226 - AluY SINE Alu -10 301 1 3234 210 42 41 chr12 135971229 135971560 -7814895 - L1ME1 LINE L1 -213 5953 5616 2400 99 47 11 chr12 135971560 135971922 -7814533 - THE1C LTR MaLR 0 375 1 3234 210 42 41 chr12 135971922 135972238 -7814217 - L1ME1 LINE L1 -550 5616 5302 310 217 0 94 chr12 135972262 135972368 -7814087 - L1ME LINE L1 -5468 602 507 357 270 33 90 chr12 135972910 135973121 -7813334 - MLT1I LTR MaLR -205 204 6 318 247 67 0 chr12 135973135 135973224 -7813231 + MER112 DNA MER1_type 157 251 -9 630 269 159 15 chr12 135973226 135973642 -7812813 - L2 LINE L2 -270 3043 2550 235 327 131 9 chr12 135974364 135974471 -7811984 + MIR SINE MIR 23 142 -66 580 269 123 9 chr12 135974649 135974876 -7811579 + LTR41 LTR ERVL 1 253 -542 604 213 68 79 chr12 135974952 135975245 -7811210 + LTR41 LTR ERVL 511 795 0 1793 119 0 101 chr12 135975524 135975860 -7810595 - AluSq SINE Alu -11 302 1 201 292 205 25 chr12 135975949 135976110 -7810345 - MIR SINE MIR -61 201 12 284 235 76 116 chr12 135976406 135976702 -7809753 - MLT1H LTR MaLR 0 549 163 438 274 7 52 chr12 135977713 135977848 -7808607 + MER91B DNA MER1_type 2 130 -60 266 285 24 65 chr12 135977996 135978119 -7808336 - L2 LINE L2 0 3272 3155 750 235 113 0 chr12 135978372 135978602 -7807853 - MER113 DNA MER1_type? -45 476 221 5168 195 16 23 chr12 135978607 135978889 -7807566 - Tigger6a DNA MER2_type -514 1083 800 2405 77 0 6 chr12 135978889 135979202 -7807253 + AluY SINE Alu 1 311 0 5168 195 16 23 chr12 135979202 135980010 -7806445 - Tigger6a DNA MER2_type -797 800 1 1496 18 0 0 chr12 135980301 135980470 -7805985 + L1PA5 LINE L1 5982 6150 -4 1675 59 0 0 chr12 135981512 135981716 -7804739 - AluY SINE Alu -22 289 86 268 296 0 0 chr12 135981859 135981947 -7804508 + (TA)n Simple_repeat Simple_repeat 2 89 0 503 322 42 17 chr12 135981954 135982193 -7804262 - MLT1L LTR MaLR -346 269 25 186 90 45 45 chr12 135982226 135982293 -7804162 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 249 308 36 30 chr12 135982384 135982615 -7803840 - L2 LINE L2 0 3313 3016 275 342 112 5 chr12 135983531 135983718 -7802737 - L2 LINE L2 -3 3310 3104 220 333 56 0 chr12 135983769 135983859 -7802596 - MIR SINE MIR -112 150 56 1341 182 4 0 chr12 135983875 135984111 -7802344 + AluJb SINE Alu 45 281 -31 216 283 115 18 chr12 135984236 135984349 -7802106 + MIR3 SINE MIR 32 155 -53 421 261 83 19 chr12 135984851 135985008 -7801447 - MLT1K LTR MaLR -305 283 117 6451 57 1 15 chr12 135985145 135985288 -7801167 + L1PA7 LINE L1 5347 5490 -664 2711 25 0 9 chr12 135985288 135985608 -7800847 + AluYb8 SINE Alu 1 317 -1 6451 57 1 15 chr12 135985608 135986283 -7800172 + L1PA7 LINE L1 5490 6154 0 8516 120 43 39 chr12 135986285 135987336 -7799119 - Tigger1 DNA MER2_type -941 1477 432 1862 142 106 32 chr12 135987336 135987675 -7798780 + THE1B LTR MaLR 1 364 0 8516 120 43 39 chr12 135987675 135987895 -7798560 - Tigger1 DNA MER2_type -1986 432 214 378 0 0 0 chr12 135987895 135987937 -7798518 + (TAA)n Simple_repeat Simple_repeat 1 42 0 8516 120 43 39 chr12 135987937 135988074 -7798381 - Tigger1 DNA MER2_type -2204 214 79 1611 67 183 0 chr12 135988074 135988314 -7798141 + AluSx SINE Alu 1 284 -28 848 78 0 0 chr12 135988211 135988314 -7798141 + AluSc SINE Alu 179 320 0 319 26 0 0 chr12 135988314 135988353 -7798102 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8516 120 43 39 chr12 135988353 135988390 -7798065 - Tigger1 DNA MER2_type -2338 80 23 1184 178 33 139 chr12 135988406 135988800 -7797655 + MLT1C LTR MaLR 85 467 0 513 283 34 17 chr12 135989746 135989923 -7796532 - MIR SINE MIR -3 259 80 4067 153 102 7 chr12 135989964 135990718 -7795737 - LTR1B LTR ERV1 0 826 1 338 292 80 0 chr12 135991071 135991184 -7795271 + MIR SINE MIR 120 241 -21 2269 109 3 3 chr12 135991546 135991891 -7794564 - AluSx SINE Alu 0 345 1 349 269 13 49 chr12 135992009 135992212 -7794243 + CT-rich Low_complexity Low_complexity 1 195 0 960 102 0 0 chr12 135992996 135993133 -7793322 - L1MA2 LINE L1 0 6304 6168 288 212 271 0 chr12 135993718 135993836 -7792619 + MIR SINE MIR 13 162 -100 200 330 148 0 chr12 135994839 135994927 -7791528 - L2 LINE L2 -24 3289 3189 23 54 0 0 chr12 135995769 135995806 -7790649 + AT_rich Low_complexity Low_complexity 1 37 0 639 256 21 91 chr12 135995887 135996097 -7790358 + MIR SINE MIR 7 198 -62 205 261 0 22 chr12 135996110 135996156 -7790299 - MIR SINE MIR -14 248 204 252 271 0 14 chr12 135996221 135996291 -7790164 + MIR SINE MIR 194 262 0 4280 233 111 21 chr12 135996401 135996965 -7789490 - L1MC4 LINE L1 -57 7985 7473 1412 191 102 35 chr12 135996965 135997336 -7789119 + MSTD LTR MaLR 1 396 0 4280 233 111 21 chr12 135997336 135998279 -7788176 - L1MC4 LINE L1 -569 7473 6342 531 279 153 18 chr12 135998320 135998542 -7787913 - MLT1I LTR MaLR -43 366 115 359 250 31 24 chr12 135998722 135998907 -7787548 - L1ME LINE L1 -311 5810 5622 211 242 297 0 chr12 135998957 135999048 -7787407 + MIR SINE MIR 125 242 -20 346 208 28 19 chr12 135999699 135999805 -7786650 - L1MB8 LINE L1 -61 6615 6509 234 0 0 0 chr12 135999805 135999831 -7786624 + (TA)n Simple_repeat Simple_repeat 2 27 0 7923 213 53 59 chr12 135999833 136003110 -7783345 - L1MB8 LINE L1 -541 6137 2878 3115 216 57 45 chr12 136003241 136004111 -7782344 - L1MB8 LINE L1 -4544 2102 1243 2127 131 0 7 chr12 136004111 136004409 -7782046 - AluSg SINE Alu -14 296 1 3115 216 57 45 chr12 136004409 136005522 -7780933 - L1MB8 LINE L1 -5403 1243 1 423 216 114 40 chr12 136006038 136006214 -7780241 - MLT1K LTR MaLR -17 571 383 335 245 19 38 chr12 136006892 136006998 -7779457 + MIR SINE MIR 129 232 -30 360 0 0 0 chr12 136007019 136007059 -7779396 + (TTA)n Simple_repeat Simple_repeat 1 40 0 461 276 32 45 chr12 136007456 136007612 -7778843 - MIR SINE MIR -13 249 96 360 303 156 42 chr12 136007630 136007983 -7778472 - L2 LINE L2 -422 2892 2500 273 79 0 0 chr12 136009167 136009205 -7777250 + tRNA-Ile-ATT tRNA tRNA 2 39 -38 270 229 84 12 chr12 136011082 136011165 -7775290 + L3 LINE CR1 738 826 -751 4093 185 8 1 chr12 136011182 136011905 -7774550 + MER44D DNA MER2_type 2 601 -4 234 0 0 0 chr12 136011955 136011981 -7774474 + (TG)n Simple_repeat Simple_repeat 1 26 0 520 288 46 68 chr12 136012098 136012528 -7773927 + Charlie8 DNA MER1_type 1 402 -2015 662 271 92 69 chr12 136012546 136012852 -7773603 + L3 LINE CR1 1066 1378 -199 500 194 31 0 chr12 136012909 136013007 -7773448 + MIR SINE MIR 58 158 -104 1780 146 8 0 chr12 136013103 136013371 -7773084 - AluJb SINE Alu -38 274 5 220 325 18 0 chr12 136013731 136013845 -7772610 + (TA)n Simple_repeat Simple_repeat 2 117 0 1794 142 158 16 chr12 136013889 136013907 -7772548 + MSTB LTR MaLR 9 23 -403 2782 112 14 34 chr12 136013907 136013948 -7772507 - MSTA LTR MaLR 0 428 388 2668 42 0 0 chr12 136013948 136014258 -7772197 + AluY SINE Alu 1 310 -1 2782 112 14 34 chr12 136014258 136014653 -7771802 - MSTA LTR MaLR -40 388 1 1794 142 158 16 chr12 136014653 136015000 -7771455 + MSTB LTR MaLR 23 426 0 364 288 93 25 chr12 136015032 136015150 -7771305 + L2 LINE L2 3147 3272 0 197 352 143 0 chr12 136015225 136015316 -7771139 + L3 LINE CR1 1430 1533 -44 628 286 70 25 chr12 136015467 136015708 -7770747 - MIR SINE MIR -2 260 9 255 31 0 0 chr12 136015768 136015800 -7770655 + (TG)n Simple_repeat Simple_repeat 2 33 0 1495 125 119 77 chr12 136015955 136016305 -7770150 - MLT1D LTR MaLR -70 435 71 1476 220 80 23 chr12 136016305 136016741 -7769714 - MLT1C LTR MaLR -1 466 6 235 233 12 70 chr12 136016744 136016830 -7769625 - MLT1D LTR MaLR -424 81 1 2474 220 67 36 chr12 136018647 136019659 -7766796 - L1ME1 LINE L1 -5 6161 5127 204 316 40 46 chr12 136019880 136020032 -7766423 + L2 LINE L2 3145 3295 -18 847 239 23 62 chr12 136020212 136020285 -7766170 - MIR SINE MIR -1 261 187 490 107 27 0 chr12 136020285 136020360 -7766095 - MADE1 DNA Mariner 0 80 4 847 239 23 62 chr12 136020360 136020545 -7765910 - MIR SINE MIR -75 187 13 184 352 0 0 chr12 136021867 136021938 -7764517 + MIR SINE MIR 185 255 -7 221 301 80 53 chr12 136022570 136022683 -7763772 - MIR3 SINE MIR -84 124 9 2579 108 3 3 chr12 136023796 136024156 -7762299 + THE1B LTR MaLR 5 364 0 331 226 210 8 chr12 136025203 136025327 -7761128 + L2 LINE L2 3162 3310 -3 20488 105 7 0 chr12 136025498 136029373 -7757082 + L1PA8 LINE L1 2271 6171 -1 213 330 45 9 chr12 136030460 136030572 -7755883 - MIR SINE MIR -87 175 60 203 333 0 0 chr12 136031102 136031168 -7755287 + (TG)n Simple_repeat Simple_repeat 1 66 0 * 302 306 11 38 chr12 136031136 136031319 -7755136 + (TATG)n Simple_repeat Simple_repeat 1 178 0 * 308 363 7 0 chr12 136031215 136031350 -7755105 + (TG)n Simple_repeat Simple_repeat 1 136 0 349 219 53 26 chr12 136031598 136031712 -7754743 - MLT1L LTR MaLR -347 268 152 805 233 154 8 chr12 136031971 136032337 -7754118 - MER57A LTR ERV1 0 403 10 7376 220 35 58 chr12 136032430 136033624 -7752831 - L1MB7 LINE L1 -105 6079 4860 1893 146 50 14 chr12 136033624 136033986 -7752469 - THE1C LTR MaLR 0 375 1 7376 220 35 58 chr12 136033986 136034281 -7752174 - L1MB7 LINE L1 -1324 4860 4560 2554 64 0 6 chr12 136034281 136034593 -7751862 + AluY SINE Alu 1 310 -1 7376 220 35 58 chr12 136034593 136035365 -7751090 - L1MB7 LINE L1 -1624 4560 3772 207 0 0 0 chr12 136035365 136035388 -7751067 + (TC)n Simple_repeat Simple_repeat 2 24 0 7376 220 35 58 chr12 136035388 136036916 -7749539 - L1MB7 LINE L1 -2412 3772 2382 2014 120 36 7 chr12 136036941 136037242 -7749213 + AluSg SINE Alu 1 310 0 231 125 21 0 chr12 136037251 136037299 -7749156 - L1MA8 LINE L1 -13 6278 6230 216 24 73 0 chr12 136037301 136037342 -7749113 + (TA)n Simple_repeat Simple_repeat 1 44 0 279 263 11 0 chr12 136037435 136037530 -7748925 - L1MB7 LINE L1 -3798 2348 2253 33 25 0 0 chr12 136037530 136037570 -7748885 + AT_rich Low_complexity Low_complexity 1 40 0 700 83 22 38 chr12 136037587 136037955 -7748500 + (TA)n Simple_repeat Simple_repeat 1 362 0 484 186 59 0 chr12 136037983 136038101 -7748354 - L1MA1 LINE L1 -17 6285 6161 287 250 76 14 chr12 136038108 136038252 -7748203 - L1MDa LINE L1 -3907 3050 2898 351 273 121 43 chr12 136038280 136038511 -7747944 - L1MDa LINE L1 -4271 2867 2619 243 162 0 59 chr12 136038599 136038667 -7747788 - L1MDa LINE L1 -4599 2539 2476 2723 141 39 6 chr12 136038876 136038900 -7747555 - L1PA16 LINE L1 -9 6157 5659 2804 142 35 2 chr12 136038900 136039359 -7747096 - L1PA16 LINE L1 -34 6132 5659 1049 146 62 0 chr12 136039346 136039524 -7746931 + L1PA16 LINE L1 5461 5649 -517 * 2291 253 52 74 chr12 136039534 136040071 -7746384 - L1MDa LINE L1 -4515 2442 1942 228 67 0 0 chr12 136040071 136040101 -7746354 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2291 253 52 74 chr12 136040101 136040524 -7745931 - L1MDa LINE L1 -5015 1942 1511 2613 149 138 17 chr12 136040538 136040694 -7745761 - LTR49 LTR ERV1 0 595 459 3155 27 22 0 chr12 136040694 136041064 -7745391 - L1PA4 LINE L1 -5 6150 5773 2613 149 138 17 chr12 136041064 136041438 -7745017 - LTR49 LTR ERV1 -136 459 1 5196 225 58 42 chr12 136041439 136041454 -7745001 - L1MDa LINE L1 -5440 1419 1406 1660 202 8 41 chr12 136041454 136041841 -7744614 + MLT1A2 LTR MaLR 1 374 0 5196 225 58 42 chr12 136041841 136042092 -7744363 - L1MDa LINE L1 -5453 1406 1161 2469 80 3 0 chr12 136042092 136042392 -7744063 - AluSp SINE Alu -12 301 1 5196 225 58 42 chr12 136042392 136043493 -7742962 - L1MDa LINE L1 -5698 1161 29 380 202 34 0 chr12 136043525 136043614 -7742841 - MER113 DNA MER1_type? -429 92 1 2128 128 0 0 chr12 136044069 136044412 -7742043 - AluSx SINE Alu 0 343 1 2726 100 0 13 chr12 136045338 136045718 -7740737 - THE1C LTR MaLR 0 375 1 209 299 0 0 chr12 136045974 136046041 -7740414 - L2 LINE L2 -212 3060 2994 468 251 75 53 chr12 136046276 136046463 -7739992 - MER117 DNA MER1_type -6 191 1 563 277 89 51 chr12 136046604 136046918 -7739537 + MER102b DNA MER1_type 5 330 -11 184 352 131 14 chr12 136048574 136048719 -7737736 + MIR3 SINE MIR 45 206 -2 2582 237 134 28 chr12 136049467 136049875 -7736580 - L1MD3 LINE L1 -1610 7180 6817 2543 56 0 3 chr12 136049875 136050180 -7736275 - AluY SINE Alu -7 304 1 2582 237 134 28 chr12 136050180 136050730 -7735725 - L1MD3 LINE L1 -1973 6817 6120 390 249 92 31 chr12 136050742 136050971 -7735484 - L1MD3 LINE L1 -4454 2668 2426 1653 84 0 0 chr12 136051022 136051236 -7735219 - L1M1 LINE L1 -537 5767 5554 2085 265 31 22 chr12 136051259 136052271 -7734184 - L1MD3 LINE L1 -4739 2202 1171 21583 151 21 19 chr12 136052287 136055344 -7731111 - L1MA2 LINE L1 0 7723 4675 2152 133 12 0 chr12 136055344 136055675 -7730780 - L1PA14 LINE L1 -9 6152 5818 21583 151 21 19 chr12 136055675 136059883 -7726572 - L1MA2 LINE L1 -3048 4675 479 194 0 0 37 chr12 136059883 136059910 -7726545 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5268 58 5 0 chr12 136059910 136060560 -7725895 - L1PA7 LINE L1 -18 6136 5484 21583 151 21 19 chr12 136060560 136060989 -7725466 - L1MA2 LINE L1 -7243 480 15 815 285 97 9 chr12 136060990 136061320 -7725135 - L1MD3 LINE L1 -5246 1177 819 602 295 63 36 chr12 136061509 136061882 -7724573 - L1MD3 LINE L1 -5631 791 95 1764 84 3 101 chr12 136062094 136062391 -7724064 - MER4A LTR ERV1 0 664 397 1095 228 62 22 chr12 136062435 136062759 -7723696 + L1ME1 LINE L1 5822 6158 -8 321 321 79 12 chr12 136062870 136063110 -7723345 + MIR SINE MIR 7 262 0 244 286 146 12 chr12 136064192 136064363 -7722092 - L2 LINE L2 0 3313 3120 478 272 93 26 chr12 136064589 136065000 -7721455 - MLT1L LTR MaLR 0 615 158 316 263 88 0 chr12 136065596 136065676 -7720779 + MER82 DNA MER2_type 8 94 -559 243 0 0 0 chr12 136065677 136065704 -7720751 + (CA)n Simple_repeat Simple_repeat 2 28 0 249 374 17 9 chr12 136065728 136065843 -7720612 - MIR SINE MIR -124 138 23 1040 213 0 33 chr12 136065898 136066109 -7720346 + MER82 DNA MER2_type 444 647 -6 275 119 0 0 chr12 136067438 136067480 -7718975 + FLAM SINE Alu 87 128 -5 69 13 0 0 chr12 136067480 136067556 -7718899 + AT_rich Low_complexity Low_complexity 1 76 0 2359 196 86 2 chr12 136067562 136068015 -7718440 - MLT1F1 LTR MaLR -12 555 65 2055 112 14 0 chr12 136068016 136068312 -7718143 + AluY SINE Alu 1 300 -11 1281 211 175 0 chr12 136068312 136068677 -7717778 + LTR64 LTR ERVK 130 558 0 725 208 7 0 chr12 136068977 136069126 -7717329 - MIR SINE MIR -112 150 1 1662 200 76 7 chr12 136069731 136070160 -7716295 + MER89 LTR ERV1 2 559 0 290 352 24 0 chr12 136071196 136071321 -7715134 + L2 LINE L2 3137 3264 -8 245 287 126 0 chr12 136071577 136071664 -7714791 - L2 LINE L2 -6 3307 3210 28 29 0 0 chr12 136071761 136071796 -7714659 + AT_rich Low_complexity Low_complexity 1 35 0 235 116 0 87 chr12 136071835 136071904 -7714551 - L2 LINE L2 -215 3057 2995 317 295 33 123 chr12 136072025 136072351 -7714104 + L2 LINE L2 3005 3301 -7 180 0 0 0 chr12 136072351 136072371 -7714084 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 257 298 0 12 chr12 136073251 136073335 -7713120 - L1ME LINE L1 -486 5680 5598 * 2157 232 119 71 chr12 136073316 136073589 -7712866 - L1ME LINE L1 -4916 1164 906 2216 113 3 0 chr12 136073589 136073889 -7712566 - AluSq SINE Alu -12 301 1 2157 232 119 71 chr12 136073889 136074710 -7711745 - L1ME LINE L1 -5174 906 18 23 0 0 0 chr12 136075106 136075129 -7711326 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 136075191 136075214 -7711241 + AT_rich Low_complexity Low_complexity 1 23 0 6178 60 6 11 chr12 136075613 136076682 -7709773 - L1P2 LINE L1 -515 5639 4573 9279 67 7 3 chr12 136077461 136078709 -7707746 + L1P LINE L1 2507 3759 -2387 880 280 45 40 chr12 136080024 136080419 -7706036 + L1ME1 LINE L1 5742 6138 -28 1909 159 0 0 chr12 136080426 136080715 -7705740 - AluSx SINE Alu -18 294 6 724 164 22 0 chr12 136080717 136080851 -7705604 - AluJo SINE Alu -174 138 2 579 84 0 0 chr12 136082173 136082244 -7704211 + (G)n Simple_repeat Simple_repeat 1 71 0 1179 285 70 18 chr12 136082773 136083286 -7703169 - L1MC4a LINE L1 -1747 6061 5522 549 151 38 0 chr12 136083392 136083498 -7702957 - FLAM_C SINE Alu -11 132 23 281 284 118 0 chr12 136083770 136083872 -7702583 + MLT1J LTR MaLR 1 114 -397 1380 149 3 95 chr12 136083872 136084167 -7702288 + AluJo SINE Alu 28 295 -17 521 330 73 39 chr12 136084345 136084700 -7701755 + LTR16C LTR ERVL 121 487 -4 847 159 22 0 chr12 136084821 136084959 -7701496 + FRAM SINE Alu 6 146 -30 297 0 0 0 chr12 136084968 136085001 -7701454 + (CA)n Simple_repeat Simple_repeat 2 34 0 244 158 0 0 chr12 136085031 136085069 -7701386 - MLT1J LTR MaLR -369 142 105 485 149 170 21 chr12 136085071 136085165 -7701290 - FRAM SINE Alu -18 158 51 724 296 60 20 chr12 136085166 136085416 -7701039 + MLT1J LTR MaLR 238 497 -14 612 301 61 4 chr12 136086935 136087164 -7699291 - MLT1L LTR MaLR -8 607 366 237 268 28 0 chr12 136087936 136088007 -7698448 + MIR SINE MIR 30 102 -106 615 174 84 103 chr12 136088758 136088998 -7697457 - L1MB5 LINE L1 0 6174 5940 953 197 16 0 chr12 136089372 136089560 -7696895 + L1ME LINE L1 5382 5572 -594 1008 152 18 6 chr12 136089563 136089728 -7696727 - AluSq SINE Alu -6 307 141 2177 110 7 10 chr12 136089731 136090031 -7696424 - AluSg SINE Alu -11 299 1 273 75 0 0 chr12 136090033 136090073 -7696382 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1809 92 8 8 chr12 136090073 136090323 -7696132 - AluY SINE Alu -31 280 31 1065 227 18 5 chr12 136141328 136141548 -7644907 - MER58A DNA MER1_type -1 223 1 2163 110 0 39 chr12 136141812 136142120 -7644335 - AluSq SINE Alu -12 301 6 6509 60 11 2 chr12 136142269 136143089 -7643366 - L1PA7 LINE L1 0 6154 5328 293 315 137 0 chr12 136143113 136143247 -7643208 + MIR3 SINE MIR 4 160 -48 588 271 131 46 chr12 136143247 136143613 -7642842 - MER113 DNA MER1_type? 0 521 125 762 156 0 0 chr12 136143614 136143723 -7642732 + FLAM_C SINE Alu 14 122 -21 1513 170 81 25 chr12 136143752 136143864 -7642591 + AluJo SINE Alu 2 106 -196 1957 118 26 33 chr12 136143864 136144170 -7642285 + AluSq SINE Alu 1 304 -9 1513 170 81 25 chr12 136144170 136144373 -7642082 + AluJo SINE Alu 106 302 0 278 26 26 0 chr12 136145521 136145560 -7640895 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 2061 135 3 0 chr12 136145563 136145852 -7640603 - AluSq SINE Alu -23 290 1 234 269 46 91 chr12 136145915 136146090 -7640365 - MER102b DNA MER1_type -8 333 167 264 312 130 19 chr12 136146573 136146727 -7639728 - MLT1L LTR MaLR -27 588 418 861 277 42 4 chr12 136147727 136147965 -7638490 + L1MEc LINE L1 39 285 -6111 1970 239 93 28 chr12 136148083 136148338 -7638117 + L1M4 LINE L1 3610 3847 -2299 2623 104 94 8 chr12 136148338 136148732 -7637723 - MSTA LTR MaLR 0 428 1 1970 239 93 28 chr12 136148732 136149161 -7637294 + L1M4 LINE L1 3847 4339 -1807 3687 82 18 0 chr12 136149725 136150175 -7636280 + LTR22A LTR ERVK 1 458 0 8548 128 18 3 chr12 136150175 136151417 -7635038 + HERVK22 LTR ERVK 1 1260 -5577 * 11966 110 6 2 chr12 136151404 136153163 -7633292 + HERVK22 LTR ERVK 3188 6822 -15 3712 77 11 4 chr12 136153201 136153656 -7632799 + LTR22A LTR ERVK 1 458 0 2271 110 3 0 chr12 136154299 136154600 -7631855 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr12 136154846 136154869 -7631586 + (TAA)n Simple_repeat Simple_repeat 1 23 0 356 187 16 2 chr12 136155295 136155365 -7631090 - MER68 LTR ERV1 -11 551 489 1392 227 81 20 chr12 136155484 136155828 -7630627 - MER68 LTR ERV1 -73 489 125 1713 120 55 4 chr12 136156500 136156806 -7629649 + AluSg SINE Alu 1 310 0 362 193 110 91 chr12 136156975 136157234 -7629221 - LTR48 LTR ERV1 -21 737 403 2774 113 3 3 chr12 136157234 136157598 -7628857 - THE1B LTR MaLR 0 364 1 362 193 110 91 chr12 136157598 136157624 -7628831 - LTR48 LTR ERV1 -355 403 379 * 493 246 25 34 chr12 136157602 136157879 -7628576 - LTR48B LTR ERV1 -374 270 2 2218 171 72 25 chr12 136159012 136159263 -7627192 - MLT1C LTR MaLR -1 466 228 243 0 0 0 chr12 136159263 136159290 -7627165 + (TG)n Simple_repeat Simple_repeat 2 28 0 2218 171 72 25 chr12 136159290 136159311 -7627144 - MLT1C LTR MaLR -239 228 209 1743 137 10 65 chr12 136159311 136159618 -7626837 - AluJb SINE Alu -22 290 1 2218 171 72 25 chr12 136159618 136159789 -7626666 - MLT1C LTR MaLR -258 209 1 281 224 161 70 chr12 136160001 136160144 -7626311 - MLT1K LTR MaLR -286 302 147 3118 26 2 0 chr12 136160353 136160756 -7625699 - L1P LINE L1 -732 5423 5020 2350 30 4 0 chr12 136160755 136161026 -7625429 + L1PA3 LINE L1 5582 5853 -302 * 1041 213 0 33 chr12 136161208 136161419 -7625036 + MER82 DNA MER2_type 444 647 -6 312 318 0 0 chr12 136163095 136163180 -7623275 - L2 LINE L2 -993 2321 2237 274 245 0 64 chr12 136164542 136164636 -7621819 + MIR SINE MIR 146 233 -29 215 289 0 0 chr12 136164736 136164788 -7621667 + MIR SINE MIR 3 54 -208 567 267 47 0 chr12 136164832 136164982 -7621473 + MIR SINE MIR 45 201 -61 2381 65 0 3 chr12 136165006 136165299 -7621156 + AluY SINE Alu 14 305 -6 2110 243 53 21 chr12 136165359 136165889 -7620566 + MLT1E2 LTR MaLR 80 626 0 1479 271 102 7 chr12 136165894 136166444 -7620011 + MLT1E2-int LTR MaLR 6 607 -764 4026 222 60 32 chr12 136166656 136167960 -7618495 + L1MDb LINE L1 743 2102 -4304 3821 24 0 0 chr12 136167960 136168378 -7618077 - L1PA2 LINE L1 0 6155 5738 4026 222 60 32 chr12 136168378 136168478 -7617977 + L1MDb LINE L1 2102 2198 -4208 330 228 38 114 chr12 136168481 136168665 -7617790 + L1MD2 LINE L1 6180 6349 -10 1179 245 70 14 chr12 136168822 136169193 -7617262 + MER113 DNA MER1_type? 126 517 -4 231 291 184 6 chr12 136169276 136169434 -7617021 + MIR SINE MIR 10 195 -67 310 275 53 38 chr12 136169505 136169636 -7616819 + MIR SINE MIR 76 208 -54 2112 210 52 26 chr12 136171650 136172146 -7614309 - MLT1E2 LTR MaLR -7 619 111 21 0 0 0 chr12 136175921 136175942 -7610513 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr12 136177394 136177427 -7609028 + (TG)n Simple_repeat Simple_repeat 1 33 0 1993 131 0 0 chr12 136180054 136180336 -7606119 + AluSq SINE Alu 31 312 -1 1994 107 31 14 chr12 136183891 136184180 -7602275 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr12 136186230 136186255 -7600200 + AT_rich Low_complexity Low_complexity 1 25 0 591 176 0 0 chr12 136186777 136186879 -7599576 - L1MC1 LINE L1 0 6333 6232 2056 233 96 8 chr12 136186909 136187442 -7599013 - L1MB8 LINE L1 0 6178 5599 466 328 48 11 chr12 136187458 136187644 -7598811 + MER76 LTR ERV 380 572 -116 1371 264 83 25 chr12 136187669 136188422 -7598033 - L1MEc LINE L1 -3603 2779 2011 2645 85 0 0 chr12 136188708 136189039 -7597416 - L1PA7 LINE L1 -5 6149 5819 366 23 0 0 chr12 136189053 136189096 -7597359 + (CA)n Simple_repeat Simple_repeat 2 44 0 1972 288 34 15 chr12 136189176 136189856 -7596599 - L1MEc LINE L1 -4606 1778 1086 252 233 23 47 chr12 136189850 136189936 -7596519 + L1MC4 LINE L1 6620 6703 -1339 * 1575 259 56 39 chr12 136189917 136190973 -7595482 + L1ME2 LINE L1 1907 3015 -3200 378 214 11 34 chr12 136190973 136191062 -7595393 + MER58B DNA MER1_type 254 340 -1 814 265 137 18 chr12 136191062 136191632 -7594823 + L1ME2 LINE L1 3123 3760 -2455 2241 108 10 0 chr12 136191636 136191931 -7594524 + AluSg SINE Alu 1 298 -12 2829 232 61 44 chr12 136191931 136193104 -7593351 + L1ME2 LINE L1 4355 5506 -727 3262 82 11 2 chr12 136193104 136193553 -7592902 + L1PA13 LINE L1 5711 6163 0 2829 232 61 44 chr12 136193553 136194158 -7592297 + L1ME2 LINE L1 5506 6168 -65 2226 92 3 0 chr12 136194158 136194453 -7592002 + AluSg SINE Alu 1 296 -14 2829 232 61 44 chr12 136194453 136194494 -7591961 + L1ME2 LINE L1 6168 6207 -26 609 293 73 18 chr12 136197087 136197360 -7589095 - MLT1K LTR MaLR 0 588 301 851 109 35 15 chr12 136197913 136198725 -7587730 + (ATG)n Simple_repeat Simple_repeat 1 828 0 740 114 23 34 chr12 136198751 136198926 -7587529 + (ATG)n Simple_repeat Simple_repeat 1 173 0 413 118 64 0 chr12 136198947 136199057 -7587398 + (ATG)n Simple_repeat Simple_repeat 1 117 0 560 333 79 0 chr12 136199461 136199650 -7586805 - MIR SINE MIR -9 253 50 871 261 101 4 chr12 136199822 136200171 -7586284 + L2 LINE L2 2634 3014 -299 222 322 92 41 chr12 136200837 136201132 -7585323 + L2 LINE L2 2969 3278 -35 293 301 38 45 chr12 136201653 136201786 -7584669 + Charlie8 DNA MER1_type 26 157 -2260 675 289 103 36 chr12 136201888 136202276 -7584179 - L2 LINE L2 0 3313 2900 231 313 27 41 chr12 136202438 136202585 -7583870 - MLT1I LTR MaLR -260 149 5 679 241 38 47 chr12 136203534 136203746 -7582709 - MIR SINE MIR -19 243 34 21 57 0 0 chr12 136204411 136204446 -7582009 + AT_rich Low_complexity Low_complexity 1 35 0 621 221 46 0 chr12 136205163 136205294 -7581161 - MER74C LTR ERVL 0 460 324 1259 201 29 11 chr12 136205601 136205879 -7580576 - MER74C LTR ERVL -166 294 12 625 312 49 89 chr12 136206769 136207795 -7578660 + HERV16 LTR ERVL 3289 4273 -1212 745 296 80 18 chr12 136207799 136208198 -7578257 - LTR16B LTR ERVL 0 464 41 255 342 32 32 chr12 136208296 136208483 -7577972 + HERV16 LTR ERVL 4019 4205 -791 899 193 6 39 chr12 136209252 136209433 -7577022 + FAM SINE Alu 1 175 0 1826 146 0 34 chr12 136209433 136209755 -7576700 + AluJo SINE Alu 1 311 -1 338 275 92 0 chr12 136209939 136210059 -7576396 + LTR16B LTR ERVL 322 452 -12 212 288 114 15 chr12 136210060 136210192 -7576263 - MIR SINE MIR -90 172 28 224 362 29 9 chr12 136211169 136211274 -7575181 + MIR3 SINE MIR 54 160 -48 518 257 65 75 chr12 136211350 136211560 -7574895 - L1MC5 LINE L1 -54 7907 7699 2134 111 0 0 chr12 136211560 136211857 -7574598 + AluSc SINE Alu 1 297 -12 518 257 65 75 chr12 136211857 136211953 -7574502 - L1MC5 LINE L1 -262 7699 7604 1038 224 49 18 chr12 136211984 136212272 -7574183 - L1ME LINE L1 -607 5559 5278 1966 113 0 3 chr12 136212450 136212766 -7573689 + AluSx SINE Alu 1 315 0 614 323 55 69 chr12 136212937 136213460 -7572995 - L1ME LINE L1 -1541 4605 4090 231 88 0 0 chr12 136213515 136213549 -7572906 + (TG)n Simple_repeat Simple_repeat 2 35 0 585 273 82 35 chr12 136213590 136213872 -7572583 - L1ME LINE L1 -2191 3955 3661 1608 182 14 0 chr12 136213915 136214212 -7572243 + AluSx SINE Alu 1 301 -11 1014 276 154 25 chr12 136214597 136214778 -7571677 + L2 LINE L2 1092 1248 -2065 1845 147 70 20 chr12 136214778 136215133 -7571322 + THE1C LTR MaLR 2 374 -1 1014 276 154 25 chr12 136215133 136215768 -7570687 + L2 LINE L2 1248 3294 -19 1735 229 11 16 chr12 136215900 136216276 -7570179 - MLT1A2 LTR MaLR 0 374 1 249 128 0 0 chr12 136216533 136216580 -7569875 + (TC)n Simple_repeat Simple_repeat 2 48 0 281 315 116 21 chr12 136216818 136217059 -7569396 - L2 LINE L2 -68 3245 2982 2047 126 134 8 chr12 136217197 136217577 -7568878 + MSTA LTR MaLR 1 428 0 412 287 17 9 chr12 136219893 136220008 -7566447 - MLT1L LTR MaLR -183 432 317 291 28 0 0 chr12 136220010 136220046 -7566409 + (TG)n Simple_repeat Simple_repeat 2 37 0 259 182 182 15 chr12 136220352 136220418 -7566037 - MLT1L LTR MaLR -535 80 4 272 330 0 4 chr12 136220420 136220499 -7565956 - MIR SINE MIR -62 146 73 808 238 70 47 chr12 136220520 136220906 -7565549 - LTR52 LTR ERVL -26 395 1 23 0 0 0 chr12 136221601 136221624 -7564831 + AT_rich Low_complexity Low_complexity 1 23 0 1766 149 12 104 chr12 136222139 136222385 -7564070 - MLT1A1 LTR MaLR 0 365 169 2443 58 0 3 chr12 136222385 136222694 -7563761 - AluY SINE Alu -3 308 1 1766 149 12 104 chr12 136222694 136222849 -7563606 - MLT1A1 LTR MaLR -196 169 1 2114 105 0 7 chr12 136223651 136223946 -7562509 - AluSx SINE Alu -19 293 1 558 279 118 49 chr12 136224266 136224479 -7561976 + MLT1L LTR MaLR 69 266 -349 200 33 0 33 chr12 136224479 136224509 -7561946 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 558 279 118 49 chr12 136224509 136224686 -7561769 + MLT1L LTR MaLR 266 486 -129 311 90 66 66 chr12 136224997 136225119 -7561336 + (TTAA)n Simple_repeat Simple_repeat 1 122 0 21 0 0 0 chr12 136225229 136225250 -7561205 + AT_rich Low_complexity Low_complexity 1 21 0 620 26 13 0 chr12 136226482 136226560 -7559895 + (GA)n Simple_repeat Simple_repeat 2 80 0 1887 236 35 75 chr12 136226768 136227031 -7559424 - L1MD2 LINE L1 -20 6339 6067 2018 135 3 0 chr12 136227031 136227342 -7559113 - AluSq SINE Alu -1 312 1 1887 236 35 75 chr12 136227342 136227735 -7558720 - L1MD2 LINE L1 -292 6067 5709 303 366 52 8 chr12 136228558 136228692 -7557763 - L2 LINE L2 0 3272 3133 2199 104 0 0 chr12 136229508 136229806 -7556649 + AluSc SINE Alu 1 298 -11 2120 164 135 2 chr12 136230188 136230632 -7555823 + MLT1D LTR MaLR 1 503 -2 349 297 84 39 chr12 136230947 136231221 -7555234 + MER115 DNA AcHobo 409 4031 0 180 0 0 0 chr12 136231732 136231752 -7554703 + (CAATT)n Simple_repeat Simple_repeat 1 20 0 208 274 36 60 chr12 136231792 136231832 -7554623 - L2 LINE L2 -50 3222 3183 1478 203 44 79 chr12 136231832 136232314 -7554141 + MLT1C LTR MaLR 3 467 0 208 274 36 60 chr12 136232314 136232357 -7554098 - L2 LINE L2 -89 3183 3141 278 250 24 36 chr12 136233234 136233318 -7553137 + MIR SINE MIR 70 152 -56 321 309 16 0 chr12 136233386 136233509 -7552946 - MER103 DNA DNA -1 165 41 241 236 14 42 chr12 136233657 136233729 -7552726 + T-rich Low_complexity Low_complexity 2 71 0 307 293 86 21 chr12 136233759 136233899 -7552556 + L2 LINE L2 2597 2745 -569 250 365 62 11 chr12 136233979 136234157 -7552298 + L2 LINE L2 2876 3062 -210 216 231 56 113 chr12 136234291 136234366 -7552089 + L2 LINE L2 3122 3185 -87 2554 142 36 10 chr12 136234366 136234781 -7551674 + MSTB LTR MaLR 1 426 0 216 231 56 113 chr12 136234781 136234865 -7551590 + L2 LINE L2 3185 3272 0 186 250 33 33 chr12 136235036 136235096 -7551359 - L2 LINE L2 -221 3051 2992 243 345 27 9 chr12 136235310 136235420 -7551035 + MLT1K LTR MaLR 137 248 -340 342 0 0 0 chr12 136235449 136235487 -7550968 + (TG)n Simple_repeat Simple_repeat 2 39 0 1434 179 0 36 chr12 136235615 136235922 -7550533 + AluJo SINE Alu 13 308 -4 1278 227 73 6 chr12 136235922 136236239 -7550216 - MER92C LTR ERV1 -16 538 201 1058 165 101 0 chr12 136236253 136236441 -7550014 - MSTA LTR MaLR -221 207 1 282 214 0 0 chr12 136236441 136236494 -7549961 + MLT1K LTR MaLR 499 551 -37 2701 97 6 0 chr12 136236496 136236857 -7549598 + THE1B LTR MaLR 1 363 -1 2247 190 24 31 chr12 136237025 136237067 -7549388 - MLT1C LTR MaLR 0 467 426 2227 103 0 0 chr12 136237067 136237368 -7549087 + AluSc SINE Alu 1 301 -8 2247 190 24 31 chr12 136237368 136237783 -7548672 - MLT1C LTR MaLR -41 426 13 409 273 168 14 chr12 136238365 136238585 -7547870 + MER102b DNA MER1_type 73 326 -15 588 37 0 12 chr12 136238593 136238674 -7547781 - L1PA3 LINE L1 -3 6152 6073 538 313 19 14 chr12 136238704 136238915 -7547540 + MIR SINE MIR 15 226 -36 871 193 0 19 chr12 136240769 136240930 -7545525 - FRAM SINE Alu -19 157 1 615 250 0 0 chr12 136241084 136241384 -7545071 + (TG)n Simple_repeat Simple_repeat 1 300 0 461 262 146 58 chr12 136243123 136243417 -7543038 + MLT1J2 LTR MaLR 1 320 -130 256 128 0 0 chr12 136243465 136243504 -7542951 - MLT1B LTR MaLR -3 387 349 533 197 98 0 chr12 136243511 136243633 -7542822 - MLT1B LTR MaLR -256 134 1 352 164 0 154 chr12 136243812 136243916 -7542539 - L1MC4 LINE L1 -1341 6701 6614 239 152 0 0 chr12 136243917 136243963 -7542492 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 697 188 68 28 chr12 136244281 136244457 -7541998 + MER53 DNA DNA 5 187 -2 1954 163 3 10 chr12 136244818 136245131 -7541324 - AluJb SINE Alu -1 311 1 4294 103 9 46 chr12 136245217 136245846 -7540609 + LTR14B LTR ERVK 3 608 0 2295 149 8 37 chr12 136246019 136246394 -7540061 - THE1B LTR MaLR 0 364 1 371 235 0 20 chr12 136246454 136246552 -7539903 - MLT1K LTR MaLR -45 543 448 251 299 0 46 chr12 136246644 136246731 -7539724 - MIR SINE MIR -158 104 22 3582 167 5 18 chr12 136246774 136246953 -7539502 + Tigger1 DNA MER2_type 1 181 -2237 2147 122 0 0 chr12 136246953 136247247 -7539208 - AluSc SINE Alu -15 294 1 3582 167 5 18 chr12 136247247 136247672 -7538783 + Tigger1 DNA MER2_type 181 597 -1821 713 194 0 0 chr12 136247666 136247790 -7538665 + Tigger1 DNA MER2_type 6 129 -2289 * 11715 127 14 20 chr12 136247781 136248095 -7538360 + Tigger1 DNA MER2_type 569 884 -1534 2172 113 0 7 chr12 136248095 136248386 -7538069 + AluSg SINE Alu 1 289 -21 11715 127 14 20 chr12 136248386 136249441 -7537014 + Tigger1 DNA MER2_type 884 1925 -493 15948 27 0 0 chr12 136249441 136252005 -7534450 + L1PA3 LINE L1 3593 6152 -3 11715 127 14 20 chr12 136252005 136252496 -7533959 + Tigger1 DNA MER2_type 1925 2418 0 1087 224 94 43 chr12 136252576 136252947 -7533508 - MER74A LTR ERVL -95 463 74 23 0 0 0 chr12 136253801 136253824 -7532631 + AT_rich Low_complexity Low_complexity 1 23 0 2105 129 0 10 chr12 136253824 136254133 -7532322 + AluSx SINE Alu 1 306 -6 777 267 83 47 chr12 136254216 136254493 -7531962 - MLT1J2 LTR MaLR 0 450 164 592 260 132 40 chr12 136254505 136254809 -7531646 + MLT1J2 LTR MaLR 1 332 -118 786 218 171 5 chr12 136254809 136255020 -7531435 + MLT1C-int LTR MaLR 1126 1371 0 1239 196 186 35 chr12 136255022 136255207 -7531248 + MLT1C LTR MaLR 3 159 -308 2093 118 0 0 chr12 136255207 136255486 -7530969 + AluSx SINE Alu 1 279 -33 1239 196 186 35 chr12 136255486 136255676 -7530779 + MLT1C LTR MaLR 159 435 -32 1426 179 25 68 chr12 136255676 136255804 -7530651 + Tigger7 DNA MER2_type 1 133 -600 2550 82 0 0 chr12 136255804 136256120 -7530335 + L1PA13 LINE L1 5846 6161 -2 1426 179 25 68 chr12 136256120 136256270 -7530185 + Tigger7 DNA MER2_type 133 267 -466 575 179 0 0 chr12 136256267 136256362 -7530093 + Tigger7 DNA MER2_type 2392 2486 -5 * 2387 108 44 36 chr12 136256368 136256729 -7529726 - THE1B LTR MaLR 0 364 1 249 232 86 66 chr12 136256852 136257003 -7529452 + Charlie8 DNA MER1_type 64 217 -2200 237 289 24 12 chr12 136257139 136257222 -7529233 + MLT1C LTR MaLR 77 160 -307 591 53 0 0 chr12 136258306 136258381 -7528074 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 617 275 93 46 chr12 136258475 136258799 -7527656 - MLT1K LTR MaLR -11 577 239 2185 121 13 0 chr12 136259063 136259369 -7527086 - AluSg SINE Alu 0 310 1 4204 175 12 29 chr12 136259743 136260544 -7525911 + L1MA10 LINE L1 5546 6333 -1 427 284 123 6 chr12 136260769 136260931 -7525524 + MER91A DNA MER1_type 14 194 -2 22 56 0 0 chr12 136261894 136261930 -7524525 + AT_rich Low_complexity Low_complexity 1 36 0 327 303 50 34 chr12 136262191 136262310 -7524145 + MER91C DNA MER1_type 18 138 -2 231 405 40 0 chr12 136262389 136262515 -7523940 - L2 LINE L2 -15 3257 3127 1730 110 118 8 chr12 136262824 136263107 -7523348 - AluSg SINE Alu 0 311 1 315 159 136 11 chr12 136263242 136263330 -7523125 - L1MB1 LINE L1 -60 6108 6010 1070 184 31 43 chr12 136263337 136263593 -7522862 - L1MC3 LINE L1 -25 7760 7508 2143 134 0 7 chr12 136263604 136263903 -7522552 - AluSx SINE Alu -15 297 1 1661 158 28 78 chr12 136263958 136264319 -7522136 + MER7A DNA MER2_type 2 342 -4 258 252 117 27 chr12 136264475 136264586 -7521869 - MLT1I LTR MaLR -196 213 93 1508 180 13 20 chr12 136265011 136265316 -7521139 + L1MA9 LINE L1 6010 6312 0 508 244 19 31 chr12 136265620 136265780 -7520675 - MER104 DNA Tc2 -1 179 22 28 86 0 0 chr12 136265780 136265850 -7520605 + AT_rich Low_complexity Low_complexity 1 70 0 1962 104 0 0 chr12 136265978 136266228 -7520227 + AluSx SINE Alu 1 250 -62 6040 103 4 2 chr12 136266233 136267067 -7519388 - L1P3 LINE L1 -5625 836 2 2284 270 35 23 chr12 136267109 136267905 -7518550 - L1MC4a LINE L1 -295 7513 6708 1639 145 145 35 chr12 136267905 136268243 -7518212 + THE1C LTR MaLR 1 375 0 9937 142 11 24 chr12 136268245 136269836 -7516619 + THE1C-int LTR MaLR 3 1573 -7 2031 151 55 27 chr12 136269842 136270207 -7516248 + THE1C LTR MaLR 1 375 0 635 186 0 0 chr12 136270207 136270314 -7516141 - L1MC4a LINE L1 -1096 6712 6606 38 39 0 39 chr12 136270457 136270535 -7515920 + AT_rich Low_complexity Low_complexity 1 75 0 1445 76 16 0 chr12 136270649 136270834 -7515621 - AluY SINE Alu -9 302 115 37 39 0 0 chr12 136270834 136270885 -7515570 + AT_rich Low_complexity Low_complexity 1 51 0 1097 62 0 0 chr12 136270885 136271014 -7515441 - AluY SINE Alu -182 129 1 276 91 0 0 chr12 136271040 136271084 -7515371 + (TC)n Simple_repeat Simple_repeat 2 45 0 645 270 99 0 chr12 136271107 136271318 -7515137 - HAL1 LINE L1 -1658 849 618 316 306 58 16 chr12 136271501 136271622 -7514833 - HAL1 LINE L1 -2190 317 192 239 265 38 68 chr12 136271736 136271868 -7514587 - HAL1 LINE L1 -2371 136 9 2466 39 0 3 chr12 136272425 136272744 -7513711 - AluY SINE Alu 0 318 1 24 53 0 0 chr12 136273052 136273090 -7513365 + AT_rich Low_complexity Low_complexity 1 38 0 2356 95 0 0 chr12 136273363 136273668 -7512787 - AluY SINE Alu -6 305 1 2320 92 3 7 chr12 136273996 136274291 -7512164 + AluSx SINE Alu 1 294 -18 2228 107 3 0 chr12 136274471 136274762 -7511693 - AluSx SINE Alu -20 292 1 714 226 181 0 chr12 136275318 136275495 -7510960 - MER3 DNA MER1_type 0 209 1 291 269 0 0 chr12 136275723 136275790 -7510665 - MER3 DNA MER1_type -142 67 1 4587 133 8 11 chr12 136276027 136276731 -7509724 + L1MA4A LINE L1 5598 6299 -4 656 251 29 0 chr12 136277995 136278166 -7508289 + MER53 DNA DNA 14 189 0 1785 114 114 7 chr12 136278350 136278630 -7507825 - AluSg SINE Alu 0 310 1 291 298 50 41 chr12 136278977 136279098 -7507357 + L2 LINE L2 3151 3272 0 201 39 0 0 chr12 136279151 136279177 -7507278 + (TG)n Simple_repeat Simple_repeat 1 26 0 248 227 0 103 chr12 136279474 136279571 -7506884 - MLT1J LTR MaLR -324 187 101 1265 244 96 85 chr12 136279701 136280263 -7506192 + MLT1E LTR MaLR 23 590 -3 2066 128 0 0 chr12 136280361 136280657 -7505798 + AluSx SINE Alu 1 296 -16 2231 191 41 80 chr12 136280817 136281355 -7505100 - LTR53 LTR ERVL 0 519 3 2070 141 0 6 chr12 136282420 136282732 -7503723 - AluSx SINE Alu -2 310 1 238 162 0 0 chr12 136283189 136283226 -7503229 - MLT1J LTR MaLR -478 115 79 3977 67 24 6 chr12 136283247 136283754 -7502701 - L1PA7 LINE L1 -4 6150 5635 225 167 0 0 chr12 136283787 136283829 -7502626 - L1MD2 LINE L1 -177 6182 6141 1024 169 0 5 chr12 136283840 136284024 -7502431 - L1MB3 LINE L1 -1 6182 6000 2144 111 7 3 chr12 136284205 136284502 -7501953 + AluSc SINE Alu 1 298 -11 201 258 30 0 chr12 136284661 136284712 -7501743 - MER5A DNA MER1_type -8 181 129 347 237 109 58 chr12 136284712 136284868 -7501587 - MER5B DNA MER1_type 0 178 15 436 233 0 0 chr12 136284911 136285001 -7501454 - MER5A DNA MER1_type -99 90 1 748 231 12 6 chr12 136285114 136285274 -7501181 - L1M4c LINE L1 -6195 189 29 333 221 12 12 chr12 136285355 136285441 -7501014 + L1MB8 LINE L1 6093 6178 0 380 301 0 0 chr12 136285449 136285552 -7500903 + L1ME1 LINE L1 6060 6162 -4 1870 126 0 0 chr12 136285574 136285835 -7500620 + AluSx SINE Alu 26 286 -26 180 0 0 0 chr12 136285849 136285869 -7500586 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1842 232 144 34 chr12 136285964 136286498 -7499957 - MLT1E LTR MaLR 0 593 1 1607 176 0 42 chr12 136286609 136286921 -7499534 + AluJo SINE Alu 1 299 -13 547 273 18 12 chr12 136287029 136287191 -7499264 - LTR16C LTR ERVL 0 491 329 413 299 129 67 chr12 136287191 136287609 -7498846 - MLT1H LTR MaLR 0 549 106 687 246 111 21 chr12 136287627 136287961 -7498494 + L1MEc LINE L1 762 1125 -5271 529 223 14 3 chr12 136287955 136288074 -7498381 - L1M2 LINE L1 -616 5550 5427 * 1117 137 6 6 chr12 136288077 136288252 -7498203 - FRAM SINE Alu 0 176 2 1503 243 43 84 chr12 136288260 136288961 -7497494 - L1M4 LINE L1 -743 5403 4732 245 50 0 0 chr12 136289951 136289991 -7496464 + L1PA3 LINE L1 6116 6155 0 642 203 124 7 chr12 136290305 136290458 -7495997 - MER63A DNA MER1_type -28 182 12 23 0 0 0 chr12 136290516 136290539 -7495916 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr12 136290667 136290700 -7495755 + (TG)n Simple_repeat Simple_repeat 1 33 0 311 294 94 11 chr12 136291165 136291345 -7495110 - MIR SINE MIR -55 207 13 2447 170 57 0 chr12 136291433 136291838 -7494617 - MSTA LTR MaLR 0 428 1 1466 210 67 79 chr12 136294414 136294469 -7491986 + MLT1D LTR MaLR 1 55 -450 2016 177 84 5 chr12 136294469 136294836 -7491619 + MSTD LTR MaLR 1 396 0 1466 210 67 79 chr12 136294836 136295289 -7491166 + MLT1D LTR MaLR 55 503 -2 1233 213 20 8 chr12 136295323 136295680 -7490775 + L1MDb LINE L1 615 1036 -5507 527 297 39 9 chr12 136295668 136295900 -7490555 + L1MDb LINE L1 2243 2481 -4059 * 3611 236 90 26 chr12 136295945 136298271 -7488184 + L1MDa LINE L1 1067 3549 -2991 1900 165 0 16 chr12 136298271 136298587 -7487868 + AluSx SINE Alu 1 311 -1 3611 236 90 26 chr12 136298587 136298646 -7487809 + L1MDa LINE L1 3549 3603 -2937 2494 57 7 0 chr12 136298945 136299245 -7487210 + AluY SINE Alu 1 302 -9 370 310 53 3 chr12 136300237 136300437 -7486018 + MIR SINE MIR 43 250 -12 206 281 18 61 chr12 136300466 136300580 -7485875 + MIR SINE MIR 148 256 -6 237 162 44 15 chr12 136301422 136301490 -7484965 + (CATA)n Simple_repeat Simple_repeat 3 72 0 408 220 114 106 chr12 136302329 136302493 -7483962 - MLT1K LTR MaLR -25 563 395 2126 117 34 0 chr12 136302493 136302784 -7483671 - AluSx SINE Alu -11 301 1 408 220 114 106 chr12 136302784 136302855 -7483600 - MLT1K LTR MaLR -193 395 326 785 246 49 15 chr12 136303094 136303297 -7483158 + MIR SINE MIR 32 241 -21 606 259 31 54 chr12 136303414 136303638 -7482817 - MIR SINE MIR -31 231 13 2132 112 0 10 chr12 136304090 136304386 -7482069 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr12 136304396 136304418 -7482037 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2221 131 0 0 chr12 136304495 136304801 -7481654 - AluSx SINE Alu -6 306 1 342 0 0 0 chr12 136305767 136305805 -7480650 + (TG)n Simple_repeat Simple_repeat 1 38 0 251 249 144 37 chr12 136305986 136306108 -7480347 + MIR SINE MIR 56 184 -63 246 174 0 0 chr12 136306591 136306637 -7479818 + T-rich Low_complexity Low_complexity 1 46 0 1644 203 121 21 chr12 136306696 136307085 -7479370 + MLT1C LTR MaLR 40 467 0 606 291 42 19 chr12 136307241 136307454 -7479001 + MIR SINE MIR 19 236 -26 633 250 224 13 chr12 136307624 136307928 -7478527 - MLT1J LTR MaLR -136 375 8 2552 68 0 0 chr12 136308198 136308508 -7477947 - AluY SINE Alu -1 310 1 2068 135 6 3 chr12 136309121 136309433 -7477022 + AluSq SINE Alu 1 313 0 1596 185 81 26 chr12 136309553 136309693 -7476762 + MLT1A1 LTR MaLR 1 132 -233 2857 95 17 0 chr12 136309693 136310051 -7476404 + THE1B LTR MaLR 1 364 0 1596 185 81 26 chr12 136310051 136310256 -7476199 + MLT1A1 LTR MaLR 132 365 0 23 54 0 0 chr12 136310339 136310376 -7476079 + AT_rich Low_complexity Low_complexity 1 37 0 2377 167 64 9 chr12 136310540 136310977 -7475478 + LOR1b LTR ERV1 1 461 0 183 347 80 13 chr12 136311723 136311948 -7474507 - L2 LINE L2 -557 2757 2518 296 228 118 0 chr12 136312100 136312236 -7474219 - MER104 DNA Tc2 -26 154 3 1274 285 140 46 chr12 136312535 136312974 -7473481 - HAL1 LINE L1 -12 2495 2099 2691 142 36 10 chr12 136312974 136313389 -7473066 - MSTB LTR MaLR 0 426 1 1274 285 140 46 chr12 136313389 136313869 -7472586 - HAL1 LINE L1 -408 2099 1489 1002 189 51 60 chr12 136313909 136314126 -7472329 - MER20 DNA MER1_type -4 215 1 414 329 75 44 chr12 136314532 136314894 -7471561 - MLT1J1 LTR MaLR -8 438 66 2301 99 0 13 chr12 136315217 136315529 -7470926 - AluSc SINE Alu -1 308 1 327 333 65 8 chr12 136317834 136317957 -7468498 - L2 LINE L2 -2 3270 3141 459 322 55 10 chr12 136318027 136318226 -7468229 + MIR SINE MIR 55 262 0 1610 159 0 80 chr12 136318332 136318658 -7467797 - AluJb SINE Alu -12 300 1 718 232 57 5 chr12 136319272 136319459 -7466996 - L1MA9 LINE L1 -2 6298 6098 523 231 0 154 chr12 136320492 136320636 -7465819 - MER5B DNA MER1_type -1 177 73 2263 88 0 3 chr12 136320636 136320920 -7465535 - AluSc SINE Alu -26 283 1 523 231 0 154 chr12 136320920 136320983 -7465472 - MER5B DNA MER1_type -105 73 2 1932 163 3 0 chr12 136321215 136321515 -7464940 - AluJo SINE Alu -7 305 5 3517 184 82 41 chr12 136321873 136322393 -7464062 - L1MB7 LINE L1 -14 6170 5673 2584 46 0 3 chr12 136322393 136322696 -7463759 - AluY SINE Alu -9 302 1 3517 184 82 41 chr12 136322696 136322807 -7463648 - L1MB7 LINE L1 -511 5673 5568 2740 153 9 16 chr12 136322807 136323232 -7463223 - MSTB LTR MaLR -4 422 1 3517 184 82 41 chr12 136323232 136323443 -7463012 - L1MB7 LINE L1 -616 5568 5275 2333 92 7 0 chr12 136323443 136323738 -7462717 + AluSc SINE Alu 1 297 -12 3517 184 82 41 chr12 136323738 136323804 -7462651 - L1MB7 LINE L1 -909 5275 5213 323 231 193 74 chr12 136323809 136323897 -7462558 + HAL1 LINE L1 772 848 -1659 2518 44 0 3 chr12 136323897 136324195 -7462260 + AluY SINE Alu 1 297 -14 323 231 193 74 chr12 136324195 136324375 -7462080 + HAL1 LINE L1 848 1072 -1435 1121 282 138 39 chr12 136324513 136324831 -7461624 - L2 LINE L2 0 3313 3028 1873 108 75 17 chr12 136324831 136325126 -7461329 - AluSp SINE Alu -1 312 1 1121 282 138 39 chr12 136325126 136325653 -7460802 - L2 LINE L2 -285 3028 2357 405 0 0 0 chr12 136325653 136325698 -7460757 + (TG)n Simple_repeat Simple_repeat 2 46 0 1121 282 138 39 chr12 136325698 136325789 -7460666 - L2 LINE L2 -956 2357 2276 229 268 0 18 chr12 136325941 136325997 -7460458 - L2 LINE L2 -816 2498 2444 226 283 0 0 chr12 136326066 136326119 -7460336 + CT-rich Low_complexity Low_complexity 3 55 0 2664 48 0 3 chr12 136326227 136326539 -7459916 - AluY SINE Alu 0 311 1 240 340 41 54 chr12 136326720 136326867 -7459588 - L2 LINE L2 -223 3049 2905 591 207 109 109 chr12 136327046 136327302 -7459153 - L1MC4 LINE L1 -16 8026 7771 279 54 0 0 chr12 136327758 136327795 -7458660 + (TG)n Simple_repeat Simple_repeat 2 38 0 328 264 132 0 chr12 136327868 136327974 -7458481 + L2 LINE L2 3188 3307 -6 2123 125 0 0 chr12 136328234 136328522 -7457933 - AluSx SINE Alu -24 288 1 405 314 117 38 chr12 136329986 136330251 -7456204 + MLT1J LTR MaLR 144 443 -68 2281 104 3 0 chr12 136330251 136330559 -7455896 + AluSg SINE Alu 1 309 -1 405 314 117 38 chr12 136330559 136330634 -7455821 + MLT1J LTR MaLR 443 511 0 235 229 16 0 chr12 136330854 136330915 -7455540 - L1ME4a LINE L1 -71 6050 5989 234 176 0 0 chr12 136330975 136331026 -7455429 + (CA)n Simple_repeat Simple_repeat 1 51 0 521 0 0 17 chr12 136331131 136331190 -7455265 - L1PA5 LINE L1 -14 6140 6083 1322 296 78 35 chr12 136331444 136331635 -7454820 + L2 LINE L2 2359 2540 -773 2029 184 60 81 chr12 136331635 136332151 -7454304 + MLT1D LTR MaLR 1 505 0 1322 296 78 35 chr12 136332151 136332782 -7453673 + L2 LINE L2 2540 3231 -82 236 337 0 20 chr12 136332887 136332985 -7453470 + MIR SINE MIR 166 261 -1 404 284 39 18 chr12 136333284 136333471 -7452984 - L1ME4a LINE L1 -247 5874 5685 228 286 32 0 chr12 136333769 136333828 -7452627 - L2 LINE L2 0 3313 3253 1015 206 0 11 chr12 136333828 136334012 -7452443 + MER5A DNA MER1_type 3 184 -5 2216 97 0 7 chr12 136334037 136334335 -7452120 + AluSq SINE Alu 5 300 -13 310 261 109 48 chr12 136334338 136334503 -7451952 - L2 LINE L2 -61 3252 3078 204 97 0 0 chr12 136334733 136334764 -7451691 + (TG)n Simple_repeat Simple_repeat 1 31 0 2249 80 21 0 chr12 136335764 136336050 -7450405 + AluY SINE Alu 1 292 -19 21 36 0 0 chr12 136336346 136336374 -7450081 + AT_rich Low_complexity Low_complexity 1 28 0 261 206 28 122 chr12 136337514 136337585 -7448870 - Charlie8 DNA MER1_type -108 233 174 2126 110 14 10 chr12 136337585 136337876 -7448579 - AluSc SINE Alu -17 292 1 261 206 28 122 chr12 136337876 136337911 -7448544 - Charlie8 DNA MER1_type -167 174 137 1841 198 154 8 chr12 136337911 136338372 -7448083 + MER77 LTR ERV1 10 602 -3 487 333 154 20 chr12 136338804 136339194 -7447261 - L2 LINE L2 0 3313 2872 487 62 78 0 chr12 136339202 136339266 -7447189 + MER77 LTR ERV1 10 78 -527 230 214 0 0 chr12 136339316 136339358 -7447097 + MER77 LTR ERV1 218 259 -346 461 224 29 88 chr12 136339361 136339566 -7446889 - L2 LINE L2 -432 2882 2690 1283 183 18 131 chr12 136339791 136340058 -7446397 - MLT1A1 LTR MaLR 0 365 151 1866 117 0 0 chr12 136340058 136340334 -7446121 + AluSg SINE Alu 34 309 0 1283 183 18 131 chr12 136340334 136340448 -7446007 - MLT1A1 LTR MaLR -214 151 26 494 256 8 0 chr12 136340474 136340595 -7445860 + MLT2B1 LTR ERVL 1 122 -398 2145 92 0 7 chr12 136340595 136340921 -7445534 + AluY SINE Alu 1 324 0 783 307 103 30 chr12 136341473 136341900 -7444555 + L2 LINE L2 2856 3313 0 29 28 0 0 chr12 136342732 136342768 -7443687 + AT_rich Low_complexity Low_complexity 1 36 0 580 294 15 39 chr12 136343141 136343345 -7443110 - MIR SINE MIR -19 243 45 549 30 0 0 chr12 136343387 136343454 -7443001 + (GAAAA)n Simple_repeat Simple_repeat 4 70 0 1863 123 4 4 chr12 136343507 136343775 -7442680 + AluSx SINE Alu 29 296 -16 1537 235 16 42 chr12 136343904 136344287 -7442168 - MLT1A2 LTR MaLR -1 373 1 1810 252 83 23 chr12 136344350 136345123 -7441332 + L1M4 LINE L1 878 1702 -4887 1526 291 44 45 chr12 136345194 136346608 -7439847 + L1M4 LINE L1 2180 3547 -3394 4548 245 78 25 chr12 136346614 136348404 -7438051 + L1M4 LINE L1 4507 6420 -559 2446 77 0 0 chr12 136348404 136348714 -7437741 + AluY SINE Alu 1 310 -1 4548 245 78 25 chr12 136348714 136348844 -7437611 + L1M4 LINE L1 6420 6542 -437 273 316 0 0 chr12 136348845 136348981 -7437474 + (TG)n Simple_repeat Simple_repeat 2 137 0 218 317 58 0 chr12 136349781 136349885 -7436570 + L2 LINE L2 1952 2061 -1253 703 309 0 9 chr12 136350592 136350812 -7435643 - MER90 LTR ERV1 -39 575 358 1311 236 80 94 chr12 136351331 136351670 -7434785 - MLT1F LTR MaLR 0 542 213 2245 110 3 3 chr12 136351670 136351980 -7434475 + AluY SINE Alu 1 310 -1 1311 236 80 94 chr12 136351980 136352190 -7434265 - MLT1F LTR MaLR -329 213 1 30 0 0 0 chr12 136352747 136352777 -7433678 + AT_rich Low_complexity Low_complexity 1 30 0 253 272 61 80 chr12 136353344 136353557 -7432898 - MLT1J LTR MaLR -203 308 100 2319 173 26 12 chr12 136353581 136354004 -7432451 + MSTB1 LTR MaLR 4 432 0 194 206 62 144 chr12 136354458 136354520 -7431935 + MER5B DNA MER1_type 2 55 -123 2117 118 0 10 chr12 136354520 136354816 -7431639 + AluSc SINE Alu 1 293 -16 194 206 62 144 chr12 136354816 136354850 -7431605 + MER5B DNA MER1_type 55 90 -88 256 304 0 0 chr12 136354912 136354968 -7431487 + MER58A DNA MER1_type 1 56 -168 946 151 20 7 chr12 136354973 136355125 -7431330 - Tigger3(Golem) DNA MER2_type -1 3028 2875 265 214 54 0 chr12 136355124 136355180 -7431275 - Tigger3(Golem) DNA MER2_type -2970 59 1 * 562 268 92 0 chr12 136355181 136355334 -7431121 + MER58B DNA MER1_type 175 341 0 265 226 148 70 chr12 136355341 136355456 -7430999 - MIR3 SINE MIR -3 205 82 2437 211 39 20 chr12 136355502 136355540 -7430915 - L1MC3 LINE L1 -63 7722 7686 1871 123 3 11 chr12 136355540 136355877 -7430578 - AluSx SINE Alu 0 335 1 2437 211 39 20 chr12 136355877 136356381 -7430074 - L1MC3 LINE L1 -99 7686 7169 232 226 38 0 chr12 136356386 136356439 -7430016 - MLT1F1 LTR MaLR -467 100 46 333 137 151 0 chr12 136356444 136356517 -7429938 - L1MC3 LINE L1 -683 7102 7019 261 252 42 70 chr12 136356577 136356720 -7429735 - L2 LINE L2 0 3313 3175 461 302 60 0 chr12 136356758 136356907 -7429548 - MIR SINE MIR -27 235 78 367 159 0 12 chr12 136356908 136356982 -7429473 - MIR SINE MIR -92 116 49 187 77 0 0 chr12 136357378 136357404 -7429051 - L2 LINE L2 -1629 1685 1660 196 342 129 0 chr12 136357948 136358150 -7428305 - L2 LINE L2 -181 3091 2864 581 258 166 56 chr12 136358179 136358250 -7428205 - MLT1K LTR MaLR 0 476 414 2187 113 0 3 chr12 136358250 136358534 -7427921 - AluSg1 SINE Alu -26 283 1 581 258 166 56 chr12 136358534 136358889 -7427566 - MLT1K LTR MaLR -62 414 3 300 176 29 15 chr12 136360431 136360499 -7425956 - L1MA1 LINE L1 -1 6301 6233 227 94 0 0 chr12 136360502 136360534 -7425921 + L1MA4 LINE L1 6085 6116 -184 593 258 48 48 chr12 136360572 136360758 -7425697 - MLT1K LTR MaLR -310 278 93 2191 112 3 0 chr12 136360793 136361087 -7425368 - AluSg SINE Alu -15 295 1 3215 143 4 31 chr12 136361158 136361620 -7424835 - LOR1a LTR ERV1 0 497 49 2018 149 3 19 chr12 136361620 136361936 -7424519 + AluSx SINE Alu 1 311 -1 3215 143 4 31 chr12 136361936 136361984 -7424471 - LOR1a LTR ERV1 -448 49 1 1517 169 4 4 chr12 136363142 136363385 -7423070 - AluJo SINE Alu -47 265 23 800 212 11 37 chr12 136364595 136364784 -7421671 + L1ME LINE L1 5556 5739 -423 882 285 106 25 chr12 136364835 136365270 -7421185 + L1MEc LINE L1 56 525 -5871 1800 169 173 37 chr12 136365609 136366071 -7420384 - L1MC3 LINE L1 -73 7712 7188 745 177 0 8 chr12 136366072 136366202 -7420253 - L1MC3 LINE L1 -668 7117 6989 1917 261 125 55 chr12 136366202 136366299 -7420156 - L1MC3 LINE L1 -1003 6782 6693 801 208 123 0 chr12 136366299 136366453 -7420002 - FAM SINE Alu 0 175 3 1917 261 125 55 chr12 136366453 136366466 -7419989 - L1MC3 LINE L1 -1092 6693 6682 243 0 0 0 chr12 136366466 136366493 -7419962 + (TA)n Simple_repeat Simple_repeat 1 27 0 1917 261 125 55 chr12 136366493 136367321 -7419134 - L1MC3 LINE L1 -1103 6682 5753 3230 138 0 48 chr12 136367321 136367843 -7418612 + LOR1a LTR ERV1 1 497 0 1917 261 125 55 chr12 136367843 136367997 -7418458 - L1MC3 LINE L1 -2032 5753 5611 384 342 8 0 chr12 136367997 136368114 -7418341 - MIR SINE MIR -139 123 6 260 286 38 39 chr12 136368192 136368344 -7418111 - MIR SINE MIR -62 146 48 332 317 0 8 chr12 136368746 136368869 -7417586 - LTR67 LTR ERVL -10 547 426 2363 127 73 68 chr12 136369608 136370034 -7416421 + MSTA LTR MaLR 1 428 0 186 354 79 31 chr12 136370663 136370790 -7415665 - MIR SINE MIR -4 258 126 3824 205 26 20 chr12 136370790 136371300 -7415155 - L1 LINE L1 -1652 4494 3975 1971 143 0 17 chr12 136371300 136371594 -7414861 - AluSx SINE Alu -23 289 1 3824 205 26 20 chr12 136371594 136371977 -7414478 - L1 LINE L1 -2171 3975 3596 1787 266 85 7 chr12 136372476 136373020 -7413435 + L2 LINE L2 2068 2653 -661 218 297 76 25 chr12 136373018 136373136 -7413319 + L2 LINE L2 3179 3302 -11 * 1543 214 3 0 chr12 136373136 136373426 -7413029 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr12 136373451 136373475 -7412980 + AT_rich Low_complexity Low_complexity 1 24 0 2328 77 10 13 chr12 136374769 136375067 -7411388 - AluY SINE Alu -14 297 1 1989 142 87 3 chr12 136377310 136377642 -7408813 + MER47A DNA MER2_type 2 361 -5 2603 127 40 33 chr12 136377771 136378154 -7408301 + MSTA LTR MaLR 1 389 -39 2422 76 0 3 chr12 136378154 136378455 -7408000 - AluY SINE Alu -11 300 1 2603 127 40 33 chr12 136378455 136378496 -7407959 + MSTA LTR MaLR 389 428 0 638 223 73 101 chr12 136378616 136378863 -7407592 + MIR SINE MIR 19 258 -4 189 356 59 15 chr12 136378969 136379104 -7407351 - MIR SINE MIR -47 215 75 213 293 0 80 chr12 136379864 136379939 -7406516 - L2 LINE L2 -4 3268 3200 396 158 0 49 chr12 136382366 136382448 -7404007 - MER67C LTR ERV1 -2 708 631 407 188 12 0 chr12 136382479 136382554 -7403901 - MER67C LTR ERV1 -59 651 576 408 148 0 0 chr12 136382554 136382615 -7403840 - MER41A LTR ERV1 0 554 494 1436 145 56 8 chr12 136382618 136382633 -7403822 - MER41B LTR ERV1 -108 527 514 1727 194 0 10 chr12 136382633 136382937 -7403518 + AluJb SINE Alu 7 307 -5 1436 145 56 8 chr12 136382937 136383170 -7403285 - MER41B LTR ERV1 -121 514 267 4182 93 18 4 chr12 136383244 136383790 -7402665 - MER41A LTR ERV1 0 554 1 1714 141 11 0 chr12 136383790 136384059 -7402396 - MER41B LTR ERV1 -363 272 1 935 218 104 0 chr12 136384059 136384270 -7402185 - MER67C LTR ERV1 -130 580 348 3562 136 107 47 chr12 136384274 136384959 -7401496 + LTR8A LTR ERV1 1 726 -1 1575 120 31 50 chr12 136384959 136385085 -7401370 - AluSx SINE Alu -21 291 171 5032 150 59 65 chr12 136385085 136386162 -7400293 - MER11C LTR ERVK 0 1071 1 1575 120 31 50 chr12 136386162 136386288 -7400167 - AluSx SINE Alu -141 171 44 1147 183 43 13 chr12 136386298 136386603 -7399852 - MER67C LTR ERV1 -363 347 1 3635 121 65 4 chr12 136386736 136387256 -7399199 - MER41C LTR ERV1 0 554 3 241 253 179 0 chr12 136387289 136387384 -7399071 - L2 LINE L2 -10 3303 3192 981 179 24 32 chr12 136387436 136387481 -7398974 - MER33 DNA MER1_type -82 80 198 5316 108 3 3 chr12 136387481 136388172 -7398283 - LTR8 LTR ERV1 0 691 1 981 179 24 32 chr12 136388172 136388377 -7398078 - MER33 DNA MER1_type 37 199 1 2166 121 0 16 chr12 136388532 136388839 -7397616 + AluSc SINE Alu 1 302 -7 954 193 36 26 chr12 136389029 136389221 -7397234 - MLT1A1 LTR MaLR -2 363 170 617 191 33 26 chr12 136389429 136389581 -7396874 + LTR43 LTR ERV1 167 319 -283 743 223 102 0 chr12 136389780 136389946 -7396509 - MLT1A1 LTR MaLR -182 183 1 2681 106 3 36 chr12 136389985 136390373 -7396082 + THE1C LTR MaLR 1 375 0 486 320 26 37 chr12 136390382 136390732 -7395723 + L1ME2 LINE L1 5508 5855 -309 228 135 0 0 chr12 136391620 136391657 -7394798 + (CA)n Simple_repeat Simple_repeat 2 38 0 350 207 209 34 chr12 136391898 136392053 -7394402 - MIR SINE MIR -62 146 3 1856 182 44 44 chr12 136392366 136392517 -7393938 + MLT1A1 LTR MaLR 1 151 -214 2422 99 0 0 chr12 136392517 136392830 -7393625 + AluSp SINE Alu 1 313 0 1856 182 44 44 chr12 136392830 136393041 -7393414 + MLT1A1 LTR MaLR 150 363 -2 554 282 27 21 chr12 136393113 136393301 -7393154 + MIR SINE MIR 8 196 -66 2375 137 8 32 chr12 136393616 136393989 -7392466 + THE1B LTR MaLR 1 364 0 1596 179 17 113 chr12 136394139 136394553 -7391902 - MLT1A2 LTR MaLR 0 374 1 2303 94 3 0 chr12 136395498 136395796 -7390659 - AluSg SINE Alu -11 299 1 307 259 44 98 chr12 136395808 136396125 -7390330 - L1ME4a LINE L1 -9 6112 5813 2383 78 0 0 chr12 136396234 136396529 -7389926 + L1PA13 LINE L1 5866 6160 -3 22 0 0 0 chr12 136396713 136396735 -7389720 + AT_rich Low_complexity Low_complexity 1 22 0 6546 46 3 1 chr12 136396735 136397513 -7388942 - L1PA5 LINE L1 -9 6145 5367 4191 48 2 2 chr12 136397508 136398034 -7388421 + L1PA5 LINE L1 4842 5367 -779 * 367 272 52 46 chr12 136398034 136398207 -7388248 - MIR SINE MIR -57 205 32 229 209 0 0 chr12 136398527 136398570 -7387885 - L2 LINE L2 -3 3310 3268 1623 236 152 11 chr12 136398571 136399033 -7387422 + REP3 LTR ERV 1 527 -35 2023 89 20 14 chr12 136399176 136399469 -7386986 + L1PA13 LINE L1 5869 6163 0 2234 89 38 0 chr12 136399479 136399771 -7386684 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr12 136399927 136399948 -7386507 + AT_rich Low_complexity Low_complexity 1 21 0 1624 141 4 0 chr12 136400715 136400964 -7385491 + L1PB1 LINE L1 5900 6149 -2 436 286 9 36 chr12 136401067 136401253 -7385202 + MLT1J LTR MaLR 71 243 -166 2502 169 26 14 chr12 136401706 136402127 -7384328 + MSTB LTR MaLR 1 426 0 290 326 86 11 chr12 136403285 136403460 -7382995 + MIR SINE MIR 5 192 -70 894 273 51 51 chr12 136403556 136403988 -7382467 + MLT1J2 LTR MaLR 1 432 -18 2156 102 116 26 chr12 136404247 136404591 -7381864 + THE1C LTR MaLR 1 375 0 596 197 6 33 chr12 136404661 136404844 -7381611 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 813 191 0 22 chr12 136404866 136405002 -7381453 - FLAM_C SINE Alu 0 133 1 727 186 16 0 chr12 136405034 136405158 -7381297 - FRAM SINE Alu -12 164 39 226 225 0 0 chr12 136405158 136405198 -7381257 + (CAT)n Simple_repeat Simple_repeat 3 42 0 340 266 121 50 chr12 136405264 136405463 -7380992 - L2 LINE L2 -86 3227 3015 387 173 13 0 chr12 136405469 136405544 -7380911 - L1MD1 LINE L1 -118 6124 6049 5394 189 35 60 chr12 136405592 136405833 -7380622 - L1MC1 LINE L1 -1 6332 6086 2321 81 13 16 chr12 136405833 136406140 -7380315 + AluSc SINE Alu 1 306 -3 5394 189 35 60 chr12 136406140 136406433 -7380022 - L1MC1 LINE L1 -247 6086 5787 2413 67 0 19 chr12 136406433 136406746 -7379709 - AluY SINE Alu -4 307 1 5394 189 35 60 chr12 136406746 136407730 -7378725 - L1MC1 LINE L1 -546 5787 4884 2303 78 14 3 chr12 136407730 136408023 -7378432 - AluY SINE Alu -15 296 1 5394 189 35 60 chr12 136408023 136408613 -7377842 - L1MC1 LINE L1 -1449 4884 4281 255 277 75 21 chr12 136408613 136408707 -7377748 - MIR SINE MIR -153 109 11 202 360 0 12 chr12 136408916 136409002 -7377453 + L2 LINE L2 3184 3268 -4 3449 65 21 5 chr12 136409378 136409810 -7376645 + L1PA7 LINE L1 5716 6154 0 512 78 0 26 chr12 136409905 136409982 -7376473 + L1PA8 LINE L1 6098 6172 0 2157 110 0 42 chr12 136410131 136410440 -7376015 + AluSq SINE Alu 6 301 -12 1065 227 18 5 chr12 136410704 136410924 -7375531 + MER58A DNA MER1_type 1 223 -1 407 248 64 14 chr12 136412084 136412225 -7374230 + Charlie8 DNA MER1_type 57 204 -2213 1470 136 27 5 chr12 136412347 136412648 -7373807 + THE1B LTR MaLR 1 364 0 629 314 14 14 chr12 136412774 136412984 -7373471 + MIR SINE MIR 17 226 -36 213 340 96 53 chr12 136413158 136413440 -7373015 + L2 LINE L2 2684 2977 -337 946 217 73 61 chr12 136413491 136413818 -7372637 - LTR27 LTR ERV1 0 636 306 793 218 11 17 chr12 136413868 136414047 -7372408 - LTR28 LTR ERV1 -842 178 1 965 169 47 122 chr12 136414712 136414867 -7371588 + MLT1D LTR MaLR 14 134 -371 2014 131 7 7 chr12 136414867 136415164 -7371291 + AluSx SINE Alu 1 297 -15 965 169 47 122 chr12 136415164 136415328 -7371127 + MLT1D LTR MaLR 134 309 -196 2518 187 21 20 chr12 136415332 136415849 -7370606 - LTR27 LTR ERV1 -4 497 2 848 194 35 40 chr12 136415849 136416049 -7370406 + MLT1D LTR MaLR 307 505 0 14938 136 24 6 chr12 136416103 136418447 -7368008 + Tigger1 DNA MER2_type 32 2418 0 314 229 23 147 chr12 136418715 136418933 -7367522 + MLT1J LTR MaLR 119 309 -202 223 340 48 34 chr12 136419300 136419447 -7367008 - L2 LINE L2 -8 3264 3116 2139 134 0 0 chr12 136420108 136420406 -7366049 + AluSx SINE Alu 1 298 -14 1060 115 0 16 chr12 136420573 136420756 -7365699 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2297 123 0 0 chr12 136420759 136421068 -7365387 - AluSx SINE Alu -3 309 1 187 289 0 0 chr12 136421229 136421267 -7365188 - MIR SINE MIR -5 257 220 191 245 0 38 chr12 136421366 136421419 -7365036 - L2 LINE L2 -13 3300 3250 2273 116 6 6 chr12 136422572 136422883 -7363572 - AluSx SINE Alu -1 311 1 1746 152 0 38 chr12 136423972 136424261 -7362194 + AluJo SINE Alu 12 289 -23 344 111 16 0 chr12 136424265 136424328 -7362127 + (TA)n Simple_repeat Simple_repeat 1 64 0 226 167 83 0 chr12 136424369 136424417 -7362038 - L1MC4 LINE L1 -1339 6703 6652 1584 201 0 13 chr12 136424417 136424715 -7361740 + AluJo SINE Alu 1 294 -18 329 269 123 15 chr12 136424881 136425011 -7361444 - MIR SINE MIR -10 252 109 1310 222 79 111 chr12 136425087 136425908 -7360547 + LTR1B LTR ERV1 28 825 -1 504 286 141 14 chr12 136425943 136426219 -7360236 - LTR16A1 LTR ERVL -2 455 145 1093 225 8 96 chr12 136426346 136426547 -7359908 - LTR53 LTR ERVL 0 519 361 2586 152 8 50 chr12 136426547 136427029 -7359426 + L1PA15 LINE L1 5704 6165 0 1093 225 8 96 chr12 136427029 136427182 -7359273 - LTR53 LTR ERVL -158 361 196 2170 181 74 15 chr12 136427441 136427844 -7358611 - MSTA LTR MaLR -1 427 1 8877 188 30 4 chr12 136427845 136429450 -7357005 - MSTB-int LTR MaLR -5 1646 1 2511 176 29 0 chr12 136429450 136429864 -7356591 - MSTB LTR MaLR 0 426 1 1101 167 14 36 chr12 136430801 136430820 -7355635 + L1MC1 LINE L1 6117 6135 -198 216 0 0 0 chr12 136430820 136430844 -7355611 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1101 167 14 36 chr12 136430844 136431046 -7355409 + L1MC1 LINE L1 6135 6333 0 1648 173 7 14 chr12 136431118 136431407 -7355048 + AluJo SINE Alu 1 287 -25 530 270 62 6 chr12 136431581 136431759 -7354696 - L2 LINE L2 0 3313 3126 240 340 43 11 chr12 136431794 136431888 -7354567 - L2 LINE L2 -335 2978 2882 415 266 71 0 chr12 136431894 136432007 -7354448 - MIR SINE MIR -32 230 110 323 254 26 9 chr12 136433165 136433279 -7353176 + L1M4 LINE L1 2439 2554 -3592 2395 89 0 0 chr12 136434711 136435015 -7351440 + AluSg SINE Alu 1 304 -6 478 204 0 0 chr12 136435249 136435347 -7351108 + L1MB5 LINE L1 6077 6174 0 1017 144 7 7 chr12 136435418 136435696 -7350759 - L1MA5A LINE L1 -5 6292 5855 1242 309 48 2 chr12 136436072 136436570 -7349885 + LTR33 LTR ERVL 1 521 0 587 247 29 41 chr12 136436610 136436780 -7349675 - MIR SINE MIR -94 168 1 594 269 6 6 chr12 136437431 136437598 -7348857 - MIR SINE MIR 0 262 96 369 75 0 0 chr12 136438577 136438630 -7347825 + (GA)n Simple_repeat Simple_repeat 2 54 0 564 30 40 20 chr12 136438630 136438731 -7347724 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1633 227 56 62 chr12 136438881 136439330 -7347125 + MER92B LTR ERV1 30 477 -159 3453 146 37 0 chr12 136439330 136439838 -7346617 + MER1A DNA MER1_type 1 527 0 1633 227 56 62 chr12 136439838 136439873 -7346582 + MER92B LTR ERV1 477 511 -125 702 153 15 104 chr12 136439873 136440075 -7346380 + MER92B LTR ERV1 453 636 0 482 301 48 6 chr12 136440157 136440323 -7346132 + MIR SINE MIR 68 240 -22 254 276 144 21 chr12 136440359 136440602 -7345853 - L1ME LINE L1 -238 5866 5594 21 71 0 0 chr12 136440736 136440778 -7345677 + AT_rich Low_complexity Low_complexity 1 42 0 586 331 50 35 chr12 136440941 136441424 -7345031 - L1ME LINE L1 -4049 2261 1772 766 287 73 55 chr12 136441433 136442577 -7343878 - L1MEd LINE L1 -4581 1729 540 2359 88 3 0 chr12 136444389 136444686 -7341769 + AluSx SINE Alu 1 298 -14 249 243 22 81 chr12 136444920 136444991 -7341464 + MER113 DNA MER1_type? 1 62 -459 3930 148 24 35 chr12 136444991 136445706 -7340749 - MER67C LTR ERV1 0 710 4 249 243 22 81 chr12 136445706 136445770 -7340685 + MER113 DNA MER1_type? 62 128 -393 21 82 0 0 chr12 136445780 136445829 -7340626 + AT_rich Low_complexity Low_complexity 1 49 0 2455 142 21 13 chr12 136446825 136447212 -7339243 - MLT1B LTR MaLR 0 390 1 353 272 24 53 chr12 136447638 136447711 -7338744 + L1MDa LINE L1 17 91 -6449 2404 49 23 3 chr12 136447711 136448016 -7338439 + AluY SINE Alu 1 311 0 353 272 24 53 chr12 136448016 136448111 -7338344 + L1MDa LINE L1 91 180 -6360 265 277 100 26 chr12 136449885 136450007 -7336448 - MER113 DNA MER1_type? -268 253 141 2214 102 7 3 chr12 136450007 136450312 -7336143 - AluSc SINE Alu -3 306 1 265 277 100 26 chr12 136450312 136450420 -7336035 - MER113 DNA MER1_type? -380 141 6 389 248 50 0 chr12 136450752 136450853 -7335602 + LTR25 LTR ERV1 248 353 -441 321 246 0 97 chr12 136450834 136450948 -7335507 + MER61E LTR ERV1 86 188 -381 * 943 201 39 51 chr12 136451026 136451050 -7335405 + MER61E LTR ERV1 339 362 -207 2295 102 0 0 chr12 136451050 136451353 -7335102 + AluSx SINE Alu 1 303 -9 943 201 39 51 chr12 136451353 136451562 -7334893 + MER61E LTR ERV1 362 569 0 317 301 41 8 chr12 136452814 136452937 -7333518 + Charlie8 DNA MER1_type 74 200 -2217 1813 133 109 70 chr12 136452941 136453056 -7333399 + MSTB1 LTR MaLR 1 110 -322 2434 124 30 25 chr12 136453056 136453418 -7333037 + THE1B LTR MaLR 1 364 0 1813 133 109 70 chr12 136453418 136453716 -7332739 + MSTB1 LTR MaLR 110 430 -2 186 365 24 0 chr12 136454801 136454886 -7331569 - MIR SINE MIR -4 258 172 333 228 91 102 chr12 136454890 136455105 -7331350 - MIR SINE MIR 0 262 53 688 115 0 0 chr12 136455225 136455321 -7331134 + AluY SINE Alu 215 310 -1 334 338 35 7 chr12 136455450 136455592 -7330863 - MIR SINE MIR -95 167 22 222 316 74 0 chr12 136456017 136456112 -7330343 + MIR SINE MIR 4 105 -157 2495 183 75 2 chr12 136456115 136456608 -7329847 - L1MB7 LINE L1 -1 6183 5655 437 228 31 39 chr12 136456638 136456765 -7329690 + MIR SINE MIR 92 217 -45 315 344 94 81 chr12 136456876 136457269 -7329186 + L2 LINE L2 2875 3272 0 2306 89 6 29 chr12 136457291 136457607 -7328848 + AluSq SINE Alu 1 309 -4 7797 27 27 30 chr12 136457620 136458520 -7327935 - MER11D LTR ERVK 0 897 1 2114 110 38 0 chr12 136459033 136459323 -7327132 - AluSg SINE Alu -3 307 7 269 231 97 138 chr12 136459323 136459484 -7326971 + MER112 DNA MER1_type 18 167 -93 1778 177 0 13 chr12 136459484 136459783 -7326672 - AluJo SINE Alu -13 299 5 269 231 97 138 chr12 136459783 136459868 -7326587 + MER112 DNA MER1_type 167 254 -6 2092 122 3 0 chr12 136460083 136460378 -7326077 + AluSx SINE Alu 7 302 -10 1042 30 43 6 chr12 136460400 136460564 -7325891 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 321 344 74 0 chr12 136461895 136462084 -7324371 - L1M4 LINE L1 -759 5387 5185 715 262 105 29 chr12 136462534 136462847 -7323608 - MLT1J2 LTR MaLR 0 450 114 644 194 35 7 chr12 136462848 136462992 -7323463 - L1MDa LINE L1 -6314 226 79 793 163 18 9 chr12 136463174 136463386 -7323069 + GA-rich Low_complexity Low_complexity 1 213 0 217 209 0 0 chr12 136464690 136464733 -7321722 + GA-rich Low_complexity Low_complexity 2 44 0 3438 104 14 6 chr12 136464796 136465286 -7321169 - MER75 DNA T2_type 0 514 21 1107 53 0 0 chr12 136465291 136465423 -7321032 - AluY SINE Alu -179 132 1 313 333 89 40 chr12 136465755 136465980 -7320475 - MIR SINE MIR -17 245 10 910 274 66 47 chr12 136466210 136466873 -7319582 + L1MC5 LINE L1 7235 7910 -51 6455 68 0 2 chr12 136467178 136468001 -7318454 - L1PA8 LINE L1 -2 6170 5350 211 362 101 40 chr12 136468216 136468365 -7318090 - L2 LINE L2 -13 3259 3102 200 270 0 10 chr12 136468476 136468576 -7317879 + (TG)n Simple_repeat Simple_repeat 2 100 0 235 302 86 0 chr12 136468602 136468718 -7317737 - L2 LINE L2 -553 2761 2636 213 317 81 32 chr12 136468759 136468882 -7317573 - L2 LINE L2 -212 3060 2932 679 274 87 74 chr12 136469248 136469550 -7316905 + LTR16C LTR ERVL 40 336 -155 1653 121 8 28 chr12 136469550 136469799 -7316656 - AluSx SINE Alu -17 295 52 679 274 87 74 chr12 136469799 136469859 -7316596 + LTR16C LTR ERVL 336 394 -97 2269 124 40 30 chr12 136469859 136470230 -7316225 + THE1C LTR MaLR 1 375 0 679 274 87 74 chr12 136470230 136470312 -7316143 + LTR16C LTR ERVL 394 491 0 2298 138 33 30 chr12 136470385 136470748 -7315707 - THE1B LTR MaLR 0 364 1 409 254 71 24 chr12 136471296 136471422 -7315033 - L2 LINE L2 0 3313 3182 809 159 97 0 chr12 136471596 136471741 -7314714 - FRAM SINE Alu -20 156 1 2702 113 8 19 chr12 136471930 136472309 -7314146 + THE1C LTR MaLR 1 375 0 1352 121 117 0 chr12 136472354 136472560 -7313895 + MER30 DNA MER1_type 1 230 0 248 303 79 0 chr12 136472612 136472701 -7313754 - MIR SINE MIR -21 241 146 1581 222 89 9 chr12 136472707 136473135 -7313320 - MLT1C LTR MaLR 0 467 6 538 279 123 63 chr12 136473512 136473942 -7312513 + MLT1J LTR MaLR 44 499 -12 5192 94 8 0 chr12 136474534 136475192 -7311263 + L1PA10 LINE L1 5495 6157 -11 198 0 0 0 chr12 136475195 136475217 -7311238 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 1741 161 0 37 chr12 136475376 136475700 -7310755 + AluJo SINE Alu 1 312 0 22 0 0 0 chr12 136475844 136475866 -7310589 + AT_rich Low_complexity Low_complexity 1 22 0 2234 103 0 0 chr12 136476672 136476962 -7309493 + AluSg1 SINE Alu 1 290 -19 714 211 8 8 chr12 136477005 136477138 -7309317 + FLAM_C SINE Alu 1 133 0 226 208 99 30 chr12 136477149 136477250 -7309205 - L1MC5 LINE L1 -219 7742 7635 509 312 63 43 chr12 136478034 136478480 -7307975 + L2 LINE L2 2859 3313 0 2427 143 8 27 chr12 136478509 136478880 -7307575 + THE1B LTR MaLR 1 364 0 372 22 0 0 chr12 136480667 136480712 -7305743 + (TG)n Simple_repeat Simple_repeat 2 46 0 1563 209 10 0 chr12 136480762 136480880 -7305575 + AluJb SINE Alu 3 118 -194 207 0 0 0 chr12 136480880 136480903 -7305552 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1563 209 10 0 chr12 136480903 136481086 -7305369 + AluJb SINE Alu 118 307 -5 511 285 49 0 chr12 136481241 136481385 -7305070 - MIR SINE MIR -101 161 11 182 288 0 41 chr12 136481444 136481517 -7304938 + MIR SINE MIR 111 180 -82 197 342 70 38 chr12 136481872 136482030 -7304425 + L2 LINE L2 3094 3256 -16 2172 122 3 6 chr12 136482437 136482748 -7303707 - AluSx SINE Alu 0 312 3 2065 222 45 59 chr12 136483399 136483902 -7302553 + L1MD2 LINE L1 5696 6189 -170 1546 192 3 23 chr12 136483902 136484204 -7302251 + AluJo SINE Alu 1 296 -16 2065 222 45 59 chr12 136484204 136484363 -7302092 + L1MD2 LINE L1 6189 6349 -10 1878 163 34 69 chr12 136484366 136484803 -7301652 + L1MC3 LINE L1 7345 7766 -19 258 32 0 0 chr12 136487133 136487164 -7299291 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 1978 261 73 55 chr12 136487196 136487459 -7298996 - L1MEc LINE L1 -5593 803 546 1763 146 4 11 chr12 136487459 136487734 -7298721 + AluJo SINE Alu 14 286 -26 1978 261 73 55 chr12 136487734 136488221 -7298234 - L1MEc LINE L1 -5850 546 39 586 304 73 39 chr12 136488623 136488862 -7297593 - MIR SINE MIR -30 178 3 2309 152 116 56 chr12 136489210 136489691 -7296764 - MLT2B2 LTR ERVL 0 515 6 189 300 43 0 chr12 136490247 136490317 -7296138 - L2 LINE L2 -967 2347 2275 363 328 25 0 chr12 136490330 136490449 -7296006 - L2 LINE L2 0 3313 3192 4200 113 12 7 chr12 136491021 136491624 -7294831 - L1MA2 LINE L1 0 6304 5699 2321 97 3 0 chr12 136491802 136492102 -7294353 + AluY SINE Alu 1 301 -10 364 321 0 22 chr12 136492209 136492343 -7294112 - MIR SINE MIR -36 226 96 3174 231 43 42 chr12 136494191 136495041 -7291414 + L1MD2 LINE L1 5488 6338 -21 201 82 61 20 chr12 136495085 136495134 -7291321 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 1684 77 0 5 chr12 136495250 136495459 -7290996 + L1PB1 LINE L1 5925 6132 -19 282 56 0 0 chr12 136495461 136495497 -7290958 + (TA)n Simple_repeat Simple_repeat 2 37 0 500 297 51 17 chr12 136495594 136495887 -7290568 - L1ME LINE L1 -297 5824 5522 1711 136 77 7 chr12 136496337 136496448 -7290007 + AluSx SINE Alu 1 103 -209 401 0 0 20 chr12 136496448 136496498 -7289957 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1711 136 77 7 chr12 136496498 136496652 -7289803 + AluSx SINE Alu 98 286 -21 642 118 0 0 chr12 136496652 136496754 -7289701 + (TA)n Simple_repeat Simple_repeat 1 102 0 2123 186 23 51 chr12 136497209 136497408 -7289047 - MER65C LTR ERV1 0 461 258 2313 120 122 8 chr12 136497408 136497792 -7288663 - MSTA LTR MaLR 0 428 1 2123 186 23 51 chr12 136497792 136498066 -7288389 - MER65C LTR ERV1 -203 258 1 1875 179 0 9 chr12 136498829 136499170 -7287285 + L1MA3 LINE L1 5965 6302 -3 2318 187 63 37 chr12 136499719 136500211 -7286244 - MLT1D LTR MaLR 0 505 1 2419 117 34 0 chr12 136500798 136501150 -7285305 - THE1B LTR MaLR 0 364 1 473 257 86 57 chr12 136501686 136501743 -7284712 + MIR SINE MIR 47 101 -161 2005 125 67 31 chr12 136501743 136502103 -7284352 - THE1C LTR MaLR 0 375 3 473 257 86 57 chr12 136502103 136502255 -7284200 + MIR SINE MIR 101 262 0 2243 126 128 15 chr12 136502853 136503243 -7283212 - Tigger2a DNA MER2_type 0 434 1 541 31 0 0 chr12 136503280 136503365 -7283090 + L1PA4 LINE L1 6082 6166 0 355 211 67 29 chr12 136504568 136504672 -7281783 + MER117 DNA MER1_type 30 137 -60 1157 184 83 76 chr12 136504705 136505087 -7281368 - MER41B LTR ERV1 -35 600 165 266 344 47 8 chr12 136505347 136505475 -7280980 - L2 LINE L2 -1 3271 3139 331 224 64 40 chr12 136505919 136506044 -7280411 - MER20B DNA MER1_type -654 129 2 21 0 0 0 chr12 136506658 136506679 -7279776 + AT_rich Low_complexity Low_complexity 1 21 0 2170 119 3 0 chr12 136507047 136507342 -7279113 - AluSx SINE Alu -16 296 1 607 178 19 4 chr12 136507566 136507685 -7278770 + L1MD2 LINE L1 5591 5708 -534 283 129 0 4 chr12 136507685 136507724 -7278731 - MSTA LTR MaLR 0 426 390 2163 112 0 7 chr12 136507724 136508199 -7278256 + AluSc SINE Alu 1 473 0 1005 70 5 53 chr12 136508211 136508246 -7278209 + (GGAA)n Simple_repeat Simple_repeat 1 211 0 1005 70 5 53 chr12 136508246 136508433 -7278022 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2161 166 31 5 chr12 136508457 136508848 -7277607 - MSTA LTR MaLR -27 401 1 647 183 0 16 chr12 136508848 136508974 -7277481 + L1MD2 LINE L1 5704 5827 -532 251 263 13 13 chr12 136508984 136509060 -7277395 + CT-rich Low_complexity Low_complexity 3 78 0 221 81 0 27 chr12 136509063 136509100 -7277355 + (TTCTC)n Simple_repeat Simple_repeat 2 37 0 209 177 26 44 chr12 136509120 136509233 -7277222 + CT-rich Low_complexity Low_complexity 6 116 0 204 200 0 0 chr12 136509280 136509325 -7277130 + CT-rich Low_complexity Low_complexity 1 45 0 276 212 0 0 chr12 136509787 136509853 -7276602 + CT-rich Low_complexity Low_complexity 1 66 0 290 253 80 40 chr12 136509945 136510095 -7276360 + L2 LINE L2 3110 3265 -48 194 250 0 0 chr12 136510124 136510172 -7276283 - L2 LINE L2 -3 3310 3263 180 0 0 0 chr12 136510410 136510430 -7276025 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1644 135 11 15 chr12 136510432 136510692 -7275763 - AluSx SINE Alu -37 275 17 296 313 20 20 chr12 136511197 136511347 -7275108 + MIR SINE MIR 65 214 -48 185 261 22 0 chr12 136513111 136513157 -7273298 - MIR SINE MIR -187 75 29 346 288 102 17 chr12 136513381 136513558 -7272897 - L2 LINE L2 -2 3311 3120 307 291 181 9 chr12 136513758 136513968 -7272487 - L2 LINE L2 -421 2893 2648 2264 107 10 3 chr12 136514461 136514769 -7271686 - AluSg SINE Alu 0 310 1 197 263 0 53 chr12 136514928 136515004 -7271451 + L2 LINE L2 3004 3075 -238 1358 222 30 22 chr12 136515054 136515415 -7271040 - MLT1A1 LTR MaLR -1 364 1 2073 199 24 83 chr12 136515863 136516452 -7270003 - MLT2B3 LTR ERVL 0 554 1 2306 205 24 31 chr12 136517661 136517812 -7268643 + L1MB8 LINE L1 5584 5734 -444 2181 127 7 3 chr12 136517812 136518119 -7268336 + AluSx SINE Alu 1 308 -4 2306 205 24 31 chr12 136518119 136518565 -7267890 + L1MB8 LINE L1 5734 6177 -1 229 350 89 0 chr12 136518850 136519007 -7267448 - L2 LINE L2 -214 3058 2888 383 332 26 26 chr12 136519239 136519380 -7267075 - MIR SINE MIR -71 191 48 2769 92 0 11 chr12 136519380 136519759 -7266696 - THE1C LTR MaLR 0 375 1 383 332 26 26 chr12 136519759 136519807 -7266648 - MIR SINE MIR -213 49 2 550 298 138 0 chr12 136520169 136520394 -7266061 - MIR SINE MIR 0 262 7 254 71 0 107 chr12 136520468 136520524 -7265931 + FLAM_A SINE Alu 84 133 0 1393 93 0 31 chr12 136520620 136520813 -7265642 + AluSc SINE Alu 123 309 0 1194 225 41 41 chr12 136520980 136521295 -7265160 - MLT1D LTR MaLR 0 505 191 397 148 0 0 chr12 136521336 136521397 -7265058 - MLT1D LTR MaLR -531 95 35 1462 246 36 71 chr12 136521399 136521895 -7264560 + MLT2B1 LTR ERVL 2 480 -40 235 241 19 0 chr12 136521906 136521960 -7264495 + (TATG)n Simple_repeat Simple_repeat 2 56 0 255 250 0 0 chr12 136521968 136522020 -7264435 + MER4-int LTR ERV1 1111 1162 -5436 257 84 101 0 chr12 136522027 136522072 -7264383 + MLT2C2 LTR ERVL 422 464 0 254 158 0 0 chr12 136522072 136522110 -7264345 - MLT1D LTR MaLR -464 41 4 781 273 138 11 chr12 136522275 136522623 -7263832 + LTR16A LTR ERVL 1 392 -58 1687 234 107 4 chr12 136522762 136523220 -7263235 - MLT1D LTR MaLR 0 505 1 2602 124 8 0 chr12 136523250 136523622 -7262833 - THE1C LTR MaLR 0 375 1 1679 168 21 18 chr12 136523645 136523931 -7262524 + AluJo SINE Alu 1 287 -25 21 0 0 0 chr12 136523931 136523952 -7262503 + AT_rich Low_complexity Low_complexity 1 21 0 261 109 0 0 chr12 136524383 136524429 -7262026 + (CA)n Simple_repeat Simple_repeat 1 46 0 188 184 20 0 chr12 136524664 136524713 -7261742 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 202 200 65 26 chr12 136525298 136525453 -7261002 + (TA)n Simple_repeat Simple_repeat 2 162 0 1902 169 0 0 chr12 136525476 136525766 -7260689 - AluJb SINE Alu -22 290 1 2497 96 29 14 chr12 136526317 136526661 -7259794 + THE1B LTR MaLR 1 349 -15 524 256 62 26 chr12 136527780 136527975 -7258480 - MLT1K LTR MaLR -15 573 372 1758 225 9 56 chr12 136528351 136528818 -7257637 - MLT2B1 LTR ERVL 0 520 76 532 158 6 175 chr12 136528822 136528993 -7257462 - MLT2B1 LTR ERVL -378 142 1 863 229 74 86 chr12 136529052 136529562 -7256893 + L1ME2 LINE L1 5664 6154 -8 4308 43 0 4 chr12 136530304 136530819 -7255636 + L1PA5 LINE L1 5641 6153 -1 232 208 13 13 chr12 136532584 136532661 -7253794 + GA-rich Low_complexity Low_complexity 1 77 0 188 308 15 0 chr12 136532879 136532944 -7253511 + L2 LINE L2 3207 3272 0 551 270 64 100 chr12 136532950 136533280 -7253175 - MLT1K LTR MaLR -109 479 162 2210 123 3 0 chr12 136533332 136533641 -7252814 + AluSq SINE Alu 1 310 -3 2418 102 0 3 chr12 136534107 136534420 -7252035 - AluSq SINE Alu -1 312 1 545 331 67 20 chr12 136535062 136535509 -7250946 + L2 LINE L2 2840 3307 -6 934 253 28 55 chr12 136535804 136536167 -7250288 - L1ME1 LINE L1 -38 6128 5776 1831 258 50 19 chr12 136536520 136537137 -7249318 - L1MCc LINE L1 -5774 649 14 273 312 77 57 chr12 136537474 136537667 -7248788 + L1ME LINE L1 5318 5506 -615 1965 156 3 3 chr12 136537667 136537962 -7248493 + AluSx SINE Alu 1 295 -17 273 312 77 57 chr12 136537962 136538210 -7248245 + L1ME LINE L1 5506 5768 -353 301 171 41 138 chr12 136538264 136538309 -7248146 + Charlie8 DNA MER1_type 40 88 -2329 1745 77 0 5 chr12 136538309 136538530 -7247925 + AluY SINE Alu 86 305 -6 301 171 41 138 chr12 136538530 136538607 -7247848 + Charlie8 DNA MER1_type 88 150 -2267 23 0 0 0 chr12 136538655 136538678 -7247777 + AT_rich Low_complexity Low_complexity 1 23 0 240 268 0 0 chr12 136538681 136538737 -7247718 + Charlie8 DNA MER1_type 194 249 -2168 459 0 0 0 chr12 136538939 136538990 -7247465 + (TG)n Simple_repeat Simple_repeat 2 52 0 1739 165 33 0 chr12 136538990 136539263 -7247192 - AluJo SINE Alu -27 285 4 935 231 72 13 chr12 136539274 136539621 -7246834 - MLT1E1 LTR MaLR -1 653 228 1050 114 20 13 chr12 136539621 136539634 -7246821 - AluSq/x SINE Alu -162 150 139 2319 103 0 0 chr12 136539634 136539926 -7246529 - AluY SINE Alu -19 292 1 1050 114 20 13 chr12 136539926 136540061 -7246394 - AluSq/x SINE Alu -173 139 1 492 187 0 0 chr12 136540073 136540164 -7246291 - MLT1E1 LTR MaLR -446 208 118 2298 114 5 56 chr12 136540456 136540661 -7245794 - THE1C LTR MaLR -1 374 160 396 0 0 0 chr12 136540661 136540705 -7245750 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2261 104 7 0 chr12 136540707 136541004 -7245451 - AluSp SINE Alu -14 299 1 2298 114 5 56 chr12 136541004 136541189 -7245266 - THE1C LTR MaLR -216 159 1 22 0 0 0 chr12 136541301 136541323 -7245132 + AT_rich Low_complexity Low_complexity 1 22 0 2540 52 0 0 chr12 136543408 136543718 -7242737 - L1P3 LINE L1 -517 5637 5328 255 310 129 0 chr12 136543760 136543876 -7242579 + MIR3 SINE MIR 30 160 -48 548 268 131 46 chr12 136543876 136544242 -7242213 - MER113 DNA MER1_type? 0 521 125 715 156 0 0 chr12 136544243 136544352 -7242103 + FLAM_C SINE Alu 14 122 -21 1417 170 81 25 chr12 136544381 136544493 -7241962 + AluJo SINE Alu 2 106 -196 1976 118 26 33 chr12 136544493 136544799 -7241656 + AluSq SINE Alu 1 304 -9 1417 170 81 25 chr12 136544799 136545002 -7241453 + AluJo SINE Alu 106 302 0 278 26 26 0 chr12 136546150 136546189 -7240266 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 2082 135 3 0 chr12 136546192 136546481 -7239974 - AluSq SINE Alu -23 290 1 234 269 46 91 chr12 136546544 136546719 -7239736 - MER102b DNA MER1_type -8 333 167 264 312 130 19 chr12 136547202 136547356 -7239099 - MLT1L LTR MaLR -27 588 418 861 277 42 4 chr12 136548356 136548594 -7237861 + L1MEc LINE L1 39 285 -6111 1982 238 93 28 chr12 136548712 136548967 -7237488 + L1M4 LINE L1 3610 3847 -2299 2623 104 94 8 chr12 136548967 136549361 -7237094 - MSTA LTR MaLR 0 428 1 1982 238 93 28 chr12 136549361 136549790 -7236665 + L1M4 LINE L1 3847 4339 -1807 3687 82 18 0 chr12 136550354 136550804 -7235651 + LTR22A LTR ERVK 1 458 0 8548 128 18 3 chr12 136550804 136552046 -7234409 + HERVK22 LTR ERVK 1 1260 -5577 * 11992 109 6 2 chr12 136552033 136553792 -7232663 + HERVK22 LTR ERVK 3188 6822 -15 3712 77 11 4 chr12 136553830 136554285 -7232170 + LTR22A LTR ERVK 1 458 0 2271 110 3 0 chr12 136554928 136555229 -7231226 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr12 136555475 136555498 -7230957 + (TAA)n Simple_repeat Simple_repeat 1 23 0 356 187 16 2 chr12 136555924 136555994 -7230461 - MER68 LTR ERV1 -11 551 489 1392 227 81 20 chr12 136556113 136556457 -7229998 - MER68 LTR ERV1 -73 489 125 1726 116 55 4 chr12 136557126 136557441 -7229014 + AluSg SINE Alu 1 310 0 362 193 110 91 chr12 136557610 136557869 -7228586 - LTR48 LTR ERV1 -21 737 403 2774 113 3 3 chr12 136557869 136558233 -7228222 - THE1B LTR MaLR 0 364 1 362 193 110 91 chr12 136558233 136558259 -7228196 - LTR48 LTR ERV1 -355 403 379 * 493 242 25 34 chr12 136558237 136558514 -7227941 - LTR48B LTR ERV1 -374 270 2 2199 172 72 25 chr12 136559647 136559898 -7226557 - MLT1C LTR MaLR -1 466 228 279 0 0 0 chr12 136559898 136559929 -7226526 + (TG)n Simple_repeat Simple_repeat 2 32 0 2199 172 72 25 chr12 136559929 136559950 -7226505 - MLT1C LTR MaLR -239 228 209 1743 137 10 65 chr12 136559950 136560257 -7226198 - AluJb SINE Alu -22 290 1 2199 172 72 25 chr12 136560257 136560426 -7226029 - MLT1C LTR MaLR -258 209 3 281 224 161 70 chr12 136560640 136560783 -7225672 - MLT1K LTR MaLR -286 302 147 3075 31 2 0 chr12 136560992 136561395 -7225060 - L1P LINE L1 -732 5423 5020 5211 21 2 0 chr12 136561395 136561982 -7224473 + L1PA3 LINE L1 5582 6155 0 577 243 35 23 chr12 136563086 136563259 -7223196 + L1ME3 LINE L1 5910 6084 -78 362 260 48 14 chr12 136563340 136563486 -7222969 - MLT1H LTR MaLR -341 208 58 387 309 19 56 chr12 136563633 136563861 -7222594 - MIR SINE MIR -26 236 16 552 308 97 51 chr12 136563923 136564445 -7222010 - L2 LINE L2 -9 3304 2783 224 321 38 38 chr12 136564631 136564762 -7221693 + MIR SINE MIR 34 164 -98 287 186 0 17 chr12 136565025 136565084 -7221371 - MLT1D LTR MaLR 0 505 448 6486 165 8 4 chr12 136565180 136567304 -7219151 + L1PB1 LINE L1 4017 6151 0 1671 170 19 35 chr12 136567399 136567432 -7219023 - AluJo SINE Alu 0 312 280 257 0 30 0 chr12 136567432 136567465 -7218990 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1671 170 19 35 chr12 136567465 136567748 -7218707 - AluJo SINE Alu -32 280 1 259 348 26 0 chr12 136568654 136568769 -7217686 + MIR SINE MIR 117 234 -28 216 268 175 0 chr12 136568786 136568883 -7217572 + MIR SINE MIR 130 243 -19 566 243 58 46 chr12 136569402 136569428 -7217027 + MER96 DNA MER1_type? 1 25 -150 2442 99 5 56 chr12 136569428 136569802 -7216653 - THE1A LTR MaLR 0 355 1 566 243 58 46 chr12 136569802 136569948 -7216507 + MER96 DNA MER1_type? 25 175 0 439 340 86 14 chr12 136570326 136570535 -7215920 - MIR SINE MIR -36 226 3 527 309 86 68 chr12 136570807 136571349 -7215106 + L2 LINE L2 2766 3312 -1 513 230 91 60 chr12 136571439 136571699 -7214756 - MLT1L LTR MaLR -1 611 235 1044 294 113 22 chr12 136571946 136572442 -7214013 + L1MB7 LINE L1 5368 5911 -273 1540 181 101 0 chr12 136572486 136572774 -7213681 - MER7A DNA MER2_type -31 315 1 16411 87 16 8 chr12 136572886 136575050 -7211405 + HERVL LTR ERVL 3455 5635 -19 297 279 54 23 chr12 136575211 136575340 -7211115 + L2 LINE L2 2700 2832 -482 301 278 86 7 chr12 136575464 136575615 -7210840 - MIR SINE MIR -37 225 63 283 330 60 28 chr12 136575974 136576189 -7210266 + MIR SINE MIR 36 257 -5 22 0 0 0 chr12 136577359 136577381 -7209074 + AT_rich Low_complexity Low_complexity 1 22 0 1861 176 0 0 chr12 136577506 136577807 -7208648 - AluJb SINE Alu -11 301 1 1937 303 89 21 chr12 136577904 136579213 -7207242 + L1ME3A LINE L1 3884 5281 -865 2066 125 26 16 chr12 136579276 136579579 -7206876 - AluSx SINE Alu -6 306 1 874 268 53 55 chr12 136579629 136580282 -7206173 + L1ME3A LINE L1 5360 6046 -124 2343 84 0 3 chr12 136580282 136580581 -7205874 - AluY SINE Alu -13 298 1 874 268 53 55 chr12 136580581 136580693 -7205762 + L1ME3A LINE L1 6046 6157 -13 656 237 32 40 chr12 136582297 136582546 -7203909 + HAL1 LINE L1 1653 1899 -608 22 35 0 0 chr12 136582790 136582819 -7203636 + AT_rich Low_complexity Low_complexity 1 29 0 783 161 81 0 chr12 136583400 136583549 -7202906 - L1MC1 LINE L1 0 6333 6173 2306 153 36 0 chr12 136583672 136584057 -7202398 - L1MC1 LINE L1 -165 6168 5770 3058 32 0 0 chr12 136585018 136585357 -7201098 - L1PA4 LINE L1 -6 6149 5811 671 260 106 82 chr12 136585629 136585960 -7200495 - MER102b DNA MER1_type -2 339 1 240 315 28 49 chr12 136588979 136589122 -7197333 + MIR3 SINE MIR 51 190 -18 373 94 0 0 chr12 136589658 136589711 -7196744 - L1MA1 LINE L1 -1 6301 6249 2226 223 37 35 chr12 136589724 136590270 -7196185 - LTR55 LTR ERV -1 547 1 187 374 17 17 chr12 136590570 136590685 -7195770 - L2 LINE L2 -268 3045 2931 570 267 148 74 chr12 136591142 136591711 -7194744 - L2 LINE L2 -340 2974 2364 2295 105 7 3 chr12 136591884 136592188 -7194267 - AluSg1 SINE Alu -4 305 1 494 236 35 21 chr12 136592272 136592416 -7194039 + MIR SINE MIR 33 178 -84 485 224 0 0 chr12 136593033 136593131 -7193324 + MER58A DNA MER1_type 12 109 0 * 1366 234 47 30 chr12 136593131 136593557 -7192898 - MLT1C LTR MaLR -9 496 1 243 226 81 0 chr12 136593644 136593706 -7192749 + L2 LINE L2 3197 3263 -50 186 261 22 0 chr12 136593765 136593811 -7192644 - L2 LINE L2 -32 3240 3194 21 36 0 0 chr12 136593870 136593898 -7192557 + AT_rich Low_complexity Low_complexity 1 28 0 275 354 28 22 chr12 136594231 136594409 -7192046 + L2 LINE L2 2578 2756 -558 539 279 29 35 chr12 136594536 136594708 -7191747 - MER69A DNA AcHobo -3 174 4 247 367 23 16 chr12 136594725 136594853 -7191602 + L2 LINE L2 2915 3043 -229 1726 153 57 36 chr12 136594877 136595234 -7191221 + THE1C LTR MaLR 3 378 -50 2550 57 0 0 chr12 136595234 136595530 -7190925 - L1PA7 LINE L1 -11 6143 5848 1726 153 57 36 chr12 136595530 136595583 -7190872 + THE1C LTR MaLR 378 428 0 317 229 122 61 chr12 136595826 136595957 -7190498 + L2 LINE L2 3133 3271 -1 182 268 206 0 chr12 136597021 136597118 -7189337 + MIR SINE MIR 73 189 -73 217 219 0 0 chr12 136598029 136598070 -7188385 + (CACCAT)n Simple_repeat Simple_repeat 5 45 0 290 323 138 0 chr12 136598078 136598263 -7188192 - MIR SINE MIR -14 248 31 450 53 0 0 chr12 136598388 136598445 -7188010 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 684 294 63 35 chr12 136598504 136598929 -7187526 + LTR33 LTR ERVL 3 439 -82 688 298 99 31 chr12 136599101 136599454 -7187001 + MLT1K LTR MaLR 207 583 -5 209 32 0 32 chr12 136599489 136599520 -7186935 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2270 117 0 3 chr12 136600194 136600503 -7185952 - AluSc SINE Alu 0 309 2 227 306 0 0 chr12 136600534 136600619 -7185836 - MER113 DNA MER1_type? -322 199 115 788 278 22 61 chr12 136600687 136601068 -7185387 - MLT2C1 LTR ERVL -30 434 1 222 258 0 134 chr12 136601150 136601247 -7185208 - MIR SINE MIR -94 114 31 11477 85 24 1 chr12 136601418 136603651 -7182804 + L1PA7 LINE L1 3895 6152 -2 678 157 10 0 chr12 136604060 136604162 -7182293 + LTR18B LTR ERVL 1 103 -511 760 146 88 58 chr12 136604183 136604388 -7182067 + LTR18B LTR ERVL 385 595 -19 546 177 21 0 chr12 136605935 136606031 -7180424 - MER53 DNA DNA -91 98 1 22 0 0 0 chr12 136606260 136606282 -7180173 + AT_rich Low_complexity Low_complexity 1 22 0 338 262 9 6 chr12 136606329 136606660 -7179795 + (TG)n Simple_repeat Simple_repeat 1 332 0 604 289 27 39 chr12 136606660 136606920 -7179535 + MIR SINE MIR 4 260 -2 206 254 34 0 chr12 136606971 136607030 -7179425 + MIR SINE MIR 89 149 -113 1777 168 109 11 chr12 136607031 136607406 -7179049 - MSTA LTR MaLR -1 427 16 221 320 0 39 chr12 136607438 136607510 -7178945 + MIR SINE MIR 147 215 -47 468 322 22 44 chr12 136607510 136607737 -7178718 + MIR SINE MIR 1 222 -40 304 325 89 46 chr12 136608146 136608383 -7178072 + MIR SINE MIR 2 248 -14 4410 274 47 32 chr12 136608519 136610263 -7176192 + L1MEc LINE L1 39 1808 -4588 217 343 86 39 chr12 136610668 136610901 -7175554 - MIR SINE MIR -18 244 1 1096 187 25 0 chr12 136612066 136612301 -7174154 - L1P LINE L1 -749 5397 5157 5770 80 0 3 chr12 136612301 136613028 -7173427 + L1PA13 LINE L1 5438 6163 0 289 262 90 48 chr12 136613855 136614000 -7172455 - MIR SINE MIR -1 261 111 544 186 8 42 chr12 136614136 136614254 -7172201 - MLT1J2 LTR MaLR -314 136 23 306 315 56 0 chr12 136614254 136614343 -7172112 - MIR SINE MIR -161 101 8 2456 79 0 7 chr12 136614982 136615322 -7171133 + AluY SINE Alu 1 311 0 475 169 77 54 chr12 136615591 136615721 -7170734 + LTR45B LTR ERV1 356 488 -1 570 232 110 63 chr12 136615790 136616110 -7170345 - MLT1J2 LTR MaLR -39 370 21 386 224 93 19 chr12 136616466 136616573 -7169882 + MER58 DNA MER1_type 2306 2420 0 2393 51 0 57 chr12 136616708 136617022 -7169433 - AluY SINE Alu -15 296 1 186 43 0 0 chr12 136617668 136617691 -7168764 + (TA)n Simple_repeat Simple_repeat 2 24 0 26 82 0 0 chr12 136618580 136618641 -7167814 + AT_rich Low_complexity Low_complexity 1 61 0 213 119 0 0 chr12 136619992 136620034 -7166421 + (CA)n Simple_repeat Simple_repeat 1 42 0 274 295 76 42 chr12 136620182 136620423 -7166032 - L1MC3 LINE L1 -860 6948 6715 200 200 0 0 chr12 136620619 136620659 -7165796 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 259 300 20 100 chr12 136620677 136620827 -7165628 + L2 LINE L2 2155 2292 -1022 594 75 0 0 chr12 136620981 136621061 -7165394 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 258 281 0 0 chr12 136621193 136621257 -7165198 + MIR SINE MIR 91 154 -108 1460 116 5 19 chr12 136623199 136623415 -7163040 - AluSg/x SINE Alu -13 296 84 237 260 0 0 chr12 136623589 136623639 -7162816 - MIR SINE MIR 0 262 213 180 0 0 0 chr12 136624144 136624164 -7162291 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 571 283 18 6 chr12 136625314 136625480 -7160975 - MER110 LTR ERV1 0 491 324 2157 127 7 0 chr12 136625688 136625995 -7160460 + AluSx SINE Alu 1 309 -3 430 284 88 32 chr12 136627156 136627441 -7159014 + MLT1L LTR MaLR 315 615 0 3492 104 22 22 chr12 136627777 136628268 -7158187 - LTR22B LTR ERVK -1 491 1 525 260 39 7 chr12 136628839 136628993 -7157462 - MLT1B LTR MaLR -217 173 15 1412 297 118 12 chr12 136629019 136629437 -7157018 - MER69 DNA AcHobo -589 637 140 461 116 0 93 chr12 136629437 136629459 -7156996 - MADE1 DNA Mariner 0 80 58 2115 79 49 0 chr12 136629459 136629763 -7156692 + AluY SINE Alu 1 317 0 461 116 0 93 chr12 136629763 136629825 -7156630 - MADE1 DNA Mariner -22 58 3 1412 297 118 12 chr12 136629825 136629981 -7156474 - MER69 DNA AcHobo -1086 140 2 718 309 93 0 chr12 136630278 136630514 -7155941 + MIR SINE MIR 5 262 0 239 260 10 0 chr12 136630911 136631007 -7155448 + CT-rich Low_complexity Low_complexity 1 97 0 635 277 156 42 chr12 136631855 136632234 -7154221 - MLT1J1 LTR MaLR -8 438 17 538 293 21 37 chr12 136632790 136632978 -7153477 - MIR SINE MIR -25 237 53 422 250 182 21 chr12 136633014 136633206 -7153249 + L2 LINE L2 3091 3313 0 2462 229 71 15 chr12 136633426 136634016 -7152439 - MER82 DNA MER2_type -7 646 24 1456 139 52 24 chr12 136634018 136634305 -7152150 + L1MA8 LINE L1 5993 6287 -4 425 239 11 0 chr12 136635402 136635490 -7150965 + MER81 DNA DNA 25 113 -1 217 246 15 46 chr12 136635727 136635792 -7150663 - L2 LINE L2 -1 3271 3209 181 208 28 0 chr12 136635826 136635898 -7150557 + CT-rich Low_complexity Low_complexity 2 75 0 297 0 0 0 chr12 136636660 136636693 -7149762 + (CA)n Simple_repeat Simple_repeat 2 34 0 1513 191 61 0 chr12 136636708 136636986 -7149469 - AluJb SINE Alu -17 295 1 1372 180 15 34 chr12 136638046 136638313 -7148142 - AluJo SINE Alu -13 299 38 2151 136 0 3 chr12 136638318 136638620 -7147835 - AluSx SINE Alu -11 301 1 242 333 14 48 chr12 136638782 136638929 -7147526 - MIR SINE MIR -56 206 65 2268 112 3 0 chr12 136639287 136639591 -7146864 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr12 136639724 136639752 -7146703 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 136640124 136640161 -7146294 + AT_rich Low_complexity Low_complexity 1 37 0 280 158 26 0 chr12 136640174 136640250 -7146205 + (TA)n Simple_repeat Simple_repeat 1 78 0 2236 91 0 36 chr12 136641529 136641838 -7144617 + AluSg SINE Alu 1 298 -12 414 236 23 152 chr12 136642405 136642799 -7143656 - MER65A LTR ERV1 -102 343 1 183 287 178 20 chr12 136642846 136642947 -7143508 - L3 LINE CR1 -105 1472 1356 666 318 134 33 chr12 136643103 136643594 -7142861 + MLT1K LTR MaLR 45 585 -3 615 143 0 0 chr12 136643997 136644081 -7142374 + FLAM SINE Alu 39 122 -21 329 187 75 127 chr12 136644219 136644353 -7142102 + MIR SINE MIR 3 129 -133 21 36 0 0 chr12 136644560 136644588 -7141867 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr12 136644984 136645019 -7141436 + AT_rich Low_complexity Low_complexity 1 35 0 298 313 62 9 chr12 136645400 136645512 -7140943 - MER5B DNA MER1_type -59 119 2 782 212 79 5 chr12 136646765 136646968 -7139487 + MER110 LTR ERV1 269 486 -5 681 165 30 45 chr12 136647334 136647467 -7138988 + FLAM_A SINE Alu 12 142 0 4013 102 9 0 chr12 136647487 136648028 -7138427 + L1PB1 LINE L1 5603 6148 -3 2729 126 99 2 chr12 136648058 136648502 -7137953 - L1MA4 LINE L1 -2 6298 5812 367 195 138 11 chr12 136649183 136649270 -7137185 - MER5A DNA MER1_type 0 189 92 296 366 99 9 chr12 136649816 136650029 -7136426 + MIR SINE MIR 23 254 -8 16269 190 48 39 chr12 136650304 136652621 -7133834 - L1PA15 LINE L1 -1 7602 5308 2138 118 69 36 chr12 136652621 136652984 -7133471 + THE1C LTR MaLR 1 375 0 16269 190 48 39 chr12 136652984 136655914 -7130541 - L1PA15 LINE L1 -2295 5308 2328 536 335 27 14 chr12 136656992 136657285 -7129170 - L1PA15 LINE L1 -7278 303 7 219 312 110 52 chr12 136657919 136658431 -7128024 - L2 LINE L2 -1476 1838 1242 190 337 146 0 chr12 136659058 136659147 -7127308 - L2 LINE L2 -25 3288 3187 299 268 144 81 chr12 136659854 136660201 -7126254 + MLT1L LTR MaLR 43 411 -204 378 0 0 0 chr12 136660766 136660808 -7125647 + (CA)n Simple_repeat Simple_repeat 2 43 0 2366 204 78 47 chr12 136662839 136663543 -7122912 + L1MC3 LINE L1 6830 7555 -230 1190 124 17 0 chr12 136663575 136663753 -7122702 + AluSg/x SINE Alu 125 305 -7 341 209 0 12 chr12 136663754 136663840 -7122615 + L1MD3 LINE L1 7792 7876 -119 183 338 0 13 chr12 136664127 136664204 -7122251 - MIR SINE MIR -99 163 88 910 270 17 59 chr12 136665597 136665953 -7120502 + MER58B DNA MER1_type 1 341 0 1734 181 99 19 chr12 136666034 136666399 -7120056 - MSTD LTR MaLR -2 394 1 333 306 63 9 chr12 136667043 136667154 -7119301 + L2 LINE L2 3153 3269 -3 440 278 91 26 chr12 136667159 136667389 -7119066 - MER102b DNA MER1_type -1 340 96 644 256 12 24 chr12 136668133 136668297 -7118158 - MIR SINE MIR -26 236 75 451 302 60 52 chr12 136668487 136668739 -7117716 + HAL1 LINE L1 43 296 -2211 476 241 82 85 chr12 136668900 136669074 -7117381 + HAL1 LINE L1 632 806 -1701 2264 95 0 30 chr12 136669074 136669379 -7117076 - AluY SINE Alu -15 296 1 476 241 82 85 chr12 136669379 136669520 -7116935 + HAL1 LINE L1 806 946 -1561 555 214 43 26 chr12 136669558 136669675 -7116780 + AluJb SINE Alu 185 303 -9 302 304 68 40 chr12 136669708 136669856 -7116599 + MER5B DNA MER1_type 27 178 0 259 209 149 0 chr12 136670284 136670351 -7116104 + MIR SINE MIR 96 172 -90 315 0 0 0 chr12 136670352 136670387 -7116068 + (T)n Simple_repeat Simple_repeat 1 35 0 608 232 28 34 chr12 136670589 136670766 -7115689 - MIR SINE MIR -73 189 14 441 294 104 18 chr12 136670919 136671140 -7115315 + MLT1E2 LTR MaLR 108 347 -279 729 83 0 10 chr12 136671140 136671236 -7115219 + AluY SINE Alu 3 97 -214 3711 26 0 0 chr12 136671236 136671664 -7114791 - L1P LINE L1 -867 5279 4852 5561 7 0 2 chr12 136671664 136672235 -7114220 + L1PA2 LINE L1 5566 6149 -6 1552 34 0 0 chr12 136672235 136672411 -7114044 + AluY SINE Alu 119 294 -17 826 261 122 8 chr12 136672411 136672656 -7113799 + MLT1E2 LTR MaLR 335 607 -19 270 221 26 13 chr12 136673399 136673476 -7112979 + MLT1K LTR MaLR 497 574 -14 824 158 63 17 chr12 136674003 136674255 -7112200 + MLT2B2 LTR ERVL 26 326 -189 333 0 0 0 chr12 136674392 136674429 -7112026 + (CA)n Simple_repeat Simple_repeat 2 38 0 345 218 39 155 chr12 136675070 136675276 -7111179 + MLT1K LTR MaLR 377 558 -30 347 252 47 16 chr12 136675519 136675646 -7110809 - MER94 DNA DNA -2 132 2 444 19 0 0 chr12 136675749 136675802 -7110653 + (CA)n Simple_repeat Simple_repeat 2 54 0 1588 148 74 34 chr12 136676430 136676754 -7109701 + MER44D DNA MER2_type 3 609 0 332 239 33 0 chr12 136676963 136677055 -7109400 + MLT1K LTR MaLR 144 238 -350 4294 154 74 29 chr12 136677724 136678479 -7107976 - L1MB1 LINE L1 -56 6133 5318 1917 141 0 55 chr12 136678479 136678791 -7107664 - AluSx SINE Alu -17 295 1 4294 154 74 29 chr12 136678791 136679028 -7107427 - L1MB1 LINE L1 -871 5318 5093 1136 231 27 0 chr12 136679023 136679279 -7107176 + L1MB1 LINE L1 4832 5094 -1052 * 416 224 65 90 chr12 136679612 136679781 -7106674 - MER112 DNA MER1_type -48 212 47 1671 187 0 19 chr12 136679781 136680091 -7106364 - AluJo SINE Alu -7 305 2 416 224 65 90 chr12 136680091 136680122 -7106333 - MER112 DNA MER1_type -213 47 17 777 259 196 30 chr12 136680478 136680907 -7105548 - Charlie8 DNA MER1_type -1912 505 6 345 276 58 41 chr12 136681303 136681467 -7104988 + LTR33 LTR ERVL 23 212 -309 1344 260 39 10 chr12 136681467 136681883 -7104572 - LTR16A LTR ERVL -2 448 21 561 292 84 7 chr12 136681906 136682180 -7104275 + LTR33 LTR ERVL 209 503 -18 233 216 91 34 chr12 136682405 136682493 -7103962 - MLT1I LTR MaLR 0 409 317 201 250 0 0 chr12 136683807 136683867 -7102588 + GA-rich Low_complexity Low_complexity 2 61 0 2601 151 32 61 chr12 136683873 136684431 -7102024 - LTR18B LTR ERVL -72 542 1 368 91 15 0 chr12 136684519 136684585 -7101870 + (CA)n Simple_repeat Simple_repeat 1 67 0 409 312 66 57 chr12 136684586 136684832 -7101623 - L2 LINE L2 -121 3151 2900 2436 117 33 25 chr12 136684832 136685192 -7101263 + THE1B LTR MaLR 1 363 -1 409 312 66 57 chr12 136685192 136685262 -7101193 - L2 LINE L2 -372 2900 2832 875 281 53 12 chr12 136685419 136685665 -7100790 - MIR SINE MIR -1 261 6 524 318 0 17 chr12 136685780 136685953 -7100502 - MIR SINE MIR -15 247 78 366 333 99 20 chr12 136687493 136687694 -7098761 - MIR SINE MIR -10 252 36 1819 158 34 3 chr12 136687776 136688067 -7098388 - AluJb SINE Alu -12 300 1 502 138 35 0 chr12 136689516 136689603 -7096852 + LTR41 LTR ERVL 1 90 -683 21 0 0 0 chr12 136689708 136689729 -7096726 + AT_rich Low_complexity Low_complexity 1 21 0 659 207 56 17 chr12 136690893 136691072 -7095383 - MER53 DNA DNA 0 189 4 265 333 0 0 chr12 136691304 136691382 -7095073 - MIR3 SINE MIR -6 202 125 22 0 0 0 chr12 136692317 136692339 -7094116 + AT_rich Low_complexity Low_complexity 1 22 0 290 186 0 0 chr12 136692703 136692768 -7093687 - L1MA4 LINE L1 -128 6175 6108 * 291 78 188 0 chr12 136692764 136692828 -7093627 + L1MA4A LINE L1 6222 6297 -6 1574 137 84 0 chr12 136692963 136693254 -7093201 + AluSq SINE Alu 1 313 0 21 36 0 0 chr12 136693389 136693417 -7093038 + AT_rich Low_complexity Low_complexity 1 28 0 186 103 0 0 chr12 136694344 136694373 -7092082 + (TA)n Simple_repeat Simple_repeat 1 29 0 310 153 68 0 chr12 136694441 136694500 -7091955 - L1MC3 LINE L1 -805 6980 6918 7256 212 53 37 chr12 136694532 136696076 -7090379 - L1MC3 LINE L1 -17 8186 6396 2555 48 3 13 chr12 136696076 136696386 -7090069 - AluY SINE Alu -4 307 1 7256 212 53 37 chr12 136696386 136696886 -7089569 - L1MC3 LINE L1 -1807 6396 5906 722 296 60 9 chr12 136696886 136697119 -7089336 - MLT1C LTR MaLR 0 467 223 3290 240 45 39 chr12 136697119 136697214 -7089241 - L1MC3 LINE L1 -762 5802 5709 2413 114 0 18 chr12 136697214 136697557 -7088898 + L1PB1 LINE L1 5814 6150 -1 3290 240 45 39 chr12 136697557 136698769 -7087686 - L1MC3 LINE L1 -855 5709 4481 1516 264 55 19 chr12 136698764 136699276 -7087179 - L1MC3 LINE L1 -5515 530 1 * 277 268 14 0 chr12 136699292 136699363 -7087092 + MER112 DNA MER1_type 164 235 -25 192 77 0 0 chr12 136701507 136701533 -7084922 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1198 266 60 62 chr12 136701935 136702364 -7084091 + LTR33 LTR ERVL 2 431 -90 2260 101 6 19 chr12 136702364 136702680 -7083775 - AluSp SINE Alu -1 312 1 1198 266 60 62 chr12 136702680 136702769 -7083686 + LTR33 LTR ERVL 431 519 -2 452 211 203 0 chr12 136703075 136703203 -7083252 - MLT1F1 LTR MaLR -228 339 186 * 592 262 136 10 chr12 136703185 136703391 -7083064 + MLT1F1 LTR MaLR 334 565 -2 785 282 86 27 chr12 136703393 136703840 -7082615 + MLT1F1-int LTR MaLR 5 601 -770 2321 90 3 16 chr12 136704101 136704411 -7082044 + AluSq SINE Alu 2 307 -6 242 355 11 0 chr12 136704430 136704523 -7081932 + MLT1F1-int LTR MaLR 756 849 -522 1333 203 21 21 chr12 136705864 136706155 -7080300 - AluJo SINE Alu -21 291 1 660 200 36 0 chr12 136706165 136706275 -7080180 - FLAM_C SINE Alu -19 124 11 280 275 25 0 chr12 136706834 136706914 -7079541 + MER67D LTR ERV1 1 82 -432 1454 192 61 56 chr12 136706931 136707290 -7079165 + MER67C LTR ERV1 43 403 -307 642 267 89 6 chr12 136707984 136708164 -7078291 + MIR SINE MIR 14 208 -54 931 94 8 0 chr12 136708493 136708620 -7077835 + AluSp/q SINE Alu 179 306 -7 623 294 75 22 chr12 136708885 136709045 -7077410 + MIR SINE MIR 13 190 -72 3460 143 43 2 chr12 136709045 136709577 -7076878 + MER41C LTR ERV1 1 554 0 623 294 75 22 chr12 136709577 136709644 -7076811 + MIR SINE MIR 190 252 -10 249 295 98 25 chr12 136709750 136709872 -7076583 - L2 LINE L2 0 3313 3183 2190 96 10 3 chr12 136710706 136711007 -7075448 + AluSc SINE Alu 1 303 -6 185 81 0 27 chr12 136711014 136711051 -7075404 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 260 224 102 95 chr12 136713724 136713871 -7072584 + MLT1J LTR MaLR 33 180 -331 941 184 0 12 chr12 136714099 136714267 -7072188 + FRAM SINE Alu 1 163 -13 21 0 0 0 chr12 136716059 136716080 -7070375 + AT_rich Low_complexity Low_complexity 1 21 0 230 21 85 0 chr12 136716236 136716283 -7070172 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2626 207 96 37 chr12 136716291 136717285 -7069170 + L1MD2 LINE L1 4896 5967 -392 629 195 40 27 chr12 136717324 136717473 -7068982 + L1MD2 LINE L1 6194 6344 -15 351 0 0 0 chr12 136717878 136717917 -7068538 + (TG)n Simple_repeat Simple_repeat 2 40 0 423 268 54 0 chr12 136718117 136718229 -7068226 + MIR SINE MIR 3 120 -142 1809 234 109 13 chr12 136718445 136718903 -7067552 + MLT1D LTR MaLR 1 502 -3 2089 121 3 0 chr12 136720227 136720509 -7065946 - AluSx SINE Alu -27 285 3 3087 211 129 42 chr12 136720562 136720663 -7065792 - L1MC4a LINE L1 -1126 6682 6591 340 71 36 0 chr12 136720663 136720719 -7065736 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3087 211 129 42 chr12 136720719 136720929 -7065526 - L1MC4a LINE L1 -1217 6591 6401 2600 40 3 3 chr12 136720929 136721233 -7065222 - AluY SINE Alu -6 305 2 3087 211 129 42 chr12 136721233 136722066 -7064389 - L1MC4a LINE L1 -1407 6401 5332 293 347 104 6 chr12 136722645 136722818 -7063637 - MIR SINE MIR -70 192 3 324 314 34 0 chr12 136722848 136722966 -7063489 + L1ME1 LINE L1 5737 5858 -308 21 57 0 0 chr12 136722991 136723026 -7063429 + AT_rich Low_complexity Low_complexity 1 35 0 258 105 0 0 chr12 136723413 136723451 -7063004 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 384 333 0 0 chr12 136723452 136723572 -7062883 - L2 LINE L2 -14 3299 3180 257 281 16 0 chr12 136723908 136723972 -7062483 - L2 LINE L2 -1 3312 3248 249 396 0 0 chr12 136723972 136724073 -7062382 - MLT1K LTR MaLR -316 272 172 1445 238 91 98 chr12 136724703 136725333 -7061122 - MLT1E2 LTR MaLR 0 626 2 382 313 8 8 chr12 136725564 136725715 -7060740 + MIR SINE MIR 1 151 -57 457 240 62 8 chr12 136725966 136726095 -7060360 - L2 LINE L2 -261 3052 2917 204 292 73 82 chr12 136726421 136726654 -7059801 - L2 LINE L2 -629 2685 2455 302 270 105 26 chr12 136727320 136727472 -7058983 - L1M LINE L1 -820 5422 5259 557 207 66 8 chr12 136727784 136727905 -7058550 + MER63 DNA MER1_type 1 754 -82 240 191 32 48 chr12 136727921 136727984 -7058471 - L2 LINE L2 -257 3056 2995 305 245 62 100 chr12 136727997 136728287 -7058168 - MLT1J LTR MaLR -232 279 1 195 256 24 24 chr12 136729210 136729292 -7057163 + L2 LINE L2 3231 3312 -1 708 159 24 0 chr12 136729595 136729721 -7056734 - L1MA7 LINE L1 -4 6287 6159 1105 174 8 2 chr12 136729725 136729939 -7056516 + L1M2 LINE L1 5471 5687 -625 652 320 100 54 chr12 136730090 136730552 -7055903 + L2 LINE L2 2826 3308 -5 286 223 138 38 chr12 136732564 136732686 -7053769 - MLT1L LTR MaLR 0 615 378 363 289 117 11 chr12 136732725 136732905 -7053550 - MLT1L LTR MaLR -211 404 206 262 419 41 44 chr12 136733115 136733430 -7053025 - L2 LINE L2 -27 3245 2932 1721 185 109 84 chr12 136734382 136734978 -7051477 + LTR36 LTR ERV1 1 611 0 389 324 0 7 chr12 136735019 136735161 -7051294 + MIR SINE MIR 122 262 0 1298 134 5 40 chr12 136735277 136735500 -7050955 + AluJo SINE Alu 12 226 -86 26 30 0 0 chr12 136737685 136737718 -7048737 + AT_rich Low_complexity Low_complexity 1 33 0 218 296 0 0 chr12 136738329 136738383 -7048072 + L2 LINE L2 3219 3272 0 1571 103 43 8 chr12 136738547 136738800 -7047655 - L1MA5A LINE L1 -6 6291 6030 757 284 138 16 chr12 136739001 136739371 -7047084 - MLT1L LTR MaLR -8 607 193 718 258 124 39 chr12 136739637 136739920 -7046535 - MLT1K LTR MaLR -91 497 191 25 31 0 0 chr12 136740322 136740354 -7046101 + AT_rich Low_complexity Low_complexity 1 32 0 9724 175 42 72 chr12 136740704 136743180 -7043275 + Tigger1 DNA MER2_type 1 2404 -14 1957 124 0 4 chr12 136743223 136743497 -7042958 - AluSg SINE Alu -37 273 1 400 139 40 89 chr12 136743546 136743647 -7042808 + L1MC2 LINE L1 6249 6344 0 1471 167 75 11 chr12 136744119 136744280 -7042175 - AluJo SINE Alu -12 300 151 414 0 0 0 chr12 136744280 136744326 -7042129 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1471 167 75 11 chr12 136744326 136744446 -7042009 - AluJo SINE Alu -161 151 1 1442 194 15 128 chr12 136745415 136745731 -7040724 - MLT1A1 LTR MaLR -3 362 101 6579 75 41 15 chr12 136745731 136746807 -7039648 - L1PA13 LINE L1 0 6163 5054 1442 194 15 128 chr12 136746807 136746898 -7039557 - MLT1A1 LTR MaLR -264 101 1 206 343 82 0 chr12 136748041 136748114 -7038341 + MIR SINE MIR 102 180 -82 2364 91 0 0 chr12 136748293 136748590 -7037865 - AluSg SINE Alu -13 297 1 5637 140 13 7 chr12 136749647 136750692 -7035763 - L1PA16 LINE L1 0 6166 5098 6592 214 30 1 chr12 136750736 136752206 -7034249 + L1 LINE L1 3584 5095 -1051 654 234 4 123 chr12 136753061 136753296 -7033159 + MIR SINE MIR 45 251 -11 1200 119 15 25 chr12 136753327 136753529 -7032926 + MSTB1 LTR MaLR 1 200 -232 44116 28 21 1 chr12 136753542 136759570 -7026885 + L1HS LINE L1 4 6155 0 219 150 0 0 chr12 136759570 136759610 -7026845 + (A)n Simple_repeat Simple_repeat 1 40 0 519 135 73 10 chr12 136759610 136759706 -7026749 + MSTB1 LTR MaLR 188 289 -143 1662 277 58 2 chr12 136760015 136760484 -7025971 + MLT1F1 LTR MaLR 73 567 0 419 351 137 19 chr12 136760708 136761124 -7025331 + MLT1K LTR MaLR 107 571 -17 468 315 88 9 chr12 136762085 136762301 -7024154 + MIR SINE MIR 9 241 -21 216 0 0 0 chr12 136762450 136762474 -7023981 + (A)n Simple_repeat Simple_repeat 1 24 0 862 166 11 0 chr12 136762664 136762839 -7023616 + CT-rich Low_complexity Low_complexity 3 179 0 190 375 75 25 chr12 136762868 136762988 -7023467 - L2 LINE L2 -24 3248 3123 363 277 76 0 chr12 136763391 136763510 -7022945 - MIR SINE MIR -88 174 47 369 278 99 102 chr12 136763524 136763866 -7022589 - L3 LINE CR1 -168 1409 1069 452 254 121 18 chr12 136764030 136764195 -7022260 - Charlie8 DNA MER1_type -2141 276 95 212 353 20 33 chr12 136764349 136764502 -7021953 - L3 LINE CR1 -584 993 843 342 224 71 0 chr12 136764555 136764640 -7021815 - L3 LINE CR1 -733 844 754 2197 148 33 39 chr12 136765368 136765732 -7020723 + THE1B LTR MaLR 1 362 -2 12095 108 4 6 chr12 136765734 136767316 -7019139 + THE1B-int LTR MaLR 1 1580 0 2382 128 39 28 chr12 136767316 136767676 -7018779 + THE1B LTR MaLR 1 364 0 683 175 60 55 chr12 136768063 136768246 -7018209 + MER53 DNA DNA 6 189 0 324 228 88 18 chr12 136769136 136769250 -7017205 - MER113 DNA MER1_type? -399 122 1 1540 252 51 63 chr12 136770352 136770903 -7015552 + MER77 LTR ERV1 53 596 -9 2306 171 81 0 chr12 136771323 136771720 -7014735 + MSTB1 LTR MaLR 4 432 0 326 267 133 9 chr12 136772063 136772168 -7014287 + L2 LINE L2 3152 3269 -3 233 261 64 85 chr12 136772499 136772687 -7013768 + MLT1K LTR MaLR 401 584 -4 351 274 126 0 chr12 136772885 136773020 -7013435 + MIR3 SINE MIR 35 186 -22 294 351 71 7 chr12 136773214 136773368 -7013087 - MIR SINE MIR -90 172 9 3199 60 0 0 chr12 136773541 136773924 -7012531 - L1PA7 LINE L1 -4 6150 5768 4311 62 53 0 chr12 136773924 136774792 -7011663 + L1P3 LINE L1 4768 5685 -469 41 21 0 0 chr12 136776403 136776451 -7010004 + AT_rich Low_complexity Low_complexity 1 48 0 652 226 153 6 chr12 136776868 136777045 -7009410 + MER3 DNA MER1_type 1 203 -6 283 295 27 55 chr12 136778172 136778355 -7008100 + MLT1K LTR MaLR 71 248 -340 1148 211 62 79 chr12 136778595 136778747 -7007708 + Charlie4a DNA MER1_type 139 292 -1669 2685 73 45 20 chr12 136778747 136779102 -7007353 - THE1B LTR MaLR 0 364 1 1148 211 62 79 chr12 136779102 136779318 -7007137 + Charlie4a DNA MER1_type 292 501 -7 395 294 37 0 chr12 136779326 136779435 -7007020 + L2 LINE L2 3189 3301 -12 303 343 0 9 chr12 136779454 136779562 -7006893 - MIR SINE MIR -121 141 35 3547 183 27 0 chr12 136779703 136780330 -7006125 + MER73 LTR ERVL 1 644 0 230 259 144 29 chr12 136780358 136780497 -7005958 - MIR3 SINE MIR -34 174 20 258 268 28 28 chr12 136780631 136780702 -7005753 - MIR SINE MIR -33 229 159 568 217 43 71 chr12 136780702 136780886 -7005569 - MLT1I LTR MaLR 0 409 231 256 103 26 0 chr12 136781017 136781056 -7005399 - MLT1I LTR MaLR -369 40 1 550 277 19 7 chr12 136781057 136781212 -7005243 - MIR SINE MIR -100 162 6 21 0 0 0 chr12 136781725 136781746 -7004709 + AT_rich Low_complexity Low_complexity 1 21 0 336 274 82 92 chr12 136782741 136783047 -7003408 + LTR16C LTR ERVL 189 491 0 391 282 70 52 chr12 136783594 136783919 -7002536 - L2 LINE L2 -257 3056 2728 1954 218 89 19 chr12 136784029 136784501 -7001954 + MLT1D LTR MaLR 1 505 0 1055 283 155 33 chr12 136784767 136785554 -7000901 - L2 LINE L2 -2 3311 2422 1119 225 168 48 chr12 136785554 136785971 -7000484 - MLT1C LTR MaLR 0 467 1 844 332 38 36 chr12 136785995 136786438 -7000017 - L2 LINE L2 -923 2391 1948 2407 122 59 6 chr12 136786610 136786964 -6999491 + THE1C LTR MaLR 1 373 -2 278 263 0 0 chr12 136787632 136787708 -6998747 + MIR SINE MIR 68 143 -119 210 322 9 17 chr12 136788006 136788121 -6998334 - MIR SINE MIR -25 237 124 680 277 44 80 chr12 136788174 136788539 -6997916 - MLT1J LTR MaLR -159 352 1 295 331 42 91 chr12 136788909 136789196 -6997259 + L2 LINE L2 2970 3242 -30 1017 327 75 33 chr12 136789443 136790339 -6996116 - L2 LINE L2 -7 3306 2383 183 206 48 63 chr12 136790694 136790757 -6995698 + L2 LINE L2 1501 1562 -1752 2396 104 0 0 chr12 136790854 136791163 -6995292 + AluSc SINE Alu 1 309 0 2239 53 0 4 chr12 136791250 136791516 -6994939 + AluY SINE Alu 36 300 -11 358 214 19 48 chr12 136791664 136791767 -6994688 - L1MA4A LINE L1 -23 6280 6181 3151 155 4 7 chr12 136791768 136792305 -6994150 - L1MA4A LINE L1 -185 6118 5584 485 229 96 12 chr12 136792402 136792581 -6993874 + MIR SINE MIR 7 190 -62 535 278 58 10 chr12 136792617 136792822 -6993633 - Charlie8 DNA MER1_type -2157 260 46 394 279 9 9 chr12 136793000 136793131 -6993324 - MIR SINE MIR -72 136 5 229 216 59 0 chr12 136793888 136793939 -6992516 + MIR SINE MIR 21 74 -188 595 121 0 11 chr12 136794847 136794945 -6991510 - L1M1 LINE L1 -432 5723 5644 494 18 0 0 chr12 136794928 136794984 -6991471 - L1PA3 LINE L1 -22 6133 6078 * 612 15 0 0 chr12 136794984 136795082 -6991373 + L1PA3 LINE L1 6078 6191 0 904 193 35 75 chr12 136795093 136795321 -6991134 - MER20 DNA MER1_type 0 219 1 244 348 27 0 chr12 136795593 136795705 -6990750 + MLT1L LTR MaLR 340 454 -161 241 289 156 17 chr12 136795709 136795882 -6990573 + LTR33A LTR ERVL 327 523 0 303 133 0 67 chr12 136796524 136796584 -6989871 + L1MB8 LINE L1 6122 6177 -1 853 255 45 83 chr12 136796591 136797034 -6989421 + L2 LINE L2 2552 2977 -337 2184 167 50 3 chr12 136797041 136797419 -6989036 - MSTB1 LTR MaLR 0 432 37 574 311 75 22 chr12 136797433 136797751 -6988704 + L2 LINE L2 2978 3312 -1 326 23 23 0 chr12 136797757 136797800 -6988655 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 217 240 0 0 chr12 136798708 136798758 -6987697 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1017 190 57 19 chr12 136799197 136799408 -6987047 - MER20 DNA MER1_type 0 219 1 198 103 0 0 chr12 136799700 136799729 -6986726 + (A)n Simple_repeat Simple_repeat 1 29 0 203 304 0 0 chr12 136800525 136800581 -6985874 - L2 LINE L2 -25 3288 3233 2040 125 8 56 chr12 136800646 136800728 -6985727 - L1PA16 LINE L1 -153 6013 5929 1938 148 3 7 chr12 136800728 136801026 -6985429 + AluSx SINE Alu 1 297 -15 2040 125 8 56 chr12 136801026 136801318 -6985137 - L1PA16 LINE L1 -237 5929 5657 2128 134 7 0 chr12 136801586 136801893 -6984562 + AluSx SINE Alu 1 309 -3 222 267 0 0 chr12 136801956 136802016 -6984439 + (CA)n Simple_repeat Simple_repeat 1 60 0 400 304 71 8 chr12 136802396 136802576 -6983879 - MIR SINE MIR -71 137 3 801 111 0 74 chr12 136803090 136803225 -6983230 + FRAM SINE Alu 34 158 -18 24 0 0 0 chr12 136804102 136804126 -6982329 + AT_rich Low_complexity Low_complexity 1 24 0 451 333 83 25 chr12 136804677 136805037 -6981418 + MLT1K LTR MaLR 90 470 -118 1060 172 37 10 chr12 136805059 136805679 -6980776 - L1MC1 LINE L1 -1 6332 5648 304 304 28 45 chr12 136805806 136805963 -6980492 + MIR SINE MIR 70 222 -40 2155 124 0 0 chr12 136806325 136806623 -6979832 + AluSx SINE Alu 1 298 -14 840 284 99 45 chr12 136806655 136806825 -6979630 - L2 LINE L2 -12 3301 3142 3802 74 6 22 chr12 136806825 136807291 -6979164 - L1PB2 LINE L1 -5 6146 5689 2220 80 0 27 chr12 136807291 136807636 -6978819 - AluY SINE Alu 0 311 1 3802 74 6 22 chr12 136807636 136807711 -6978744 - L1PB2 LINE L1 -462 5689 5614 840 284 99 45 chr12 136807711 136808035 -6978420 - L2 LINE L2 -171 3142 2777 267 224 0 0 chr12 136808166 136808224 -6978231 - L1MD3 LINE L1 -231 7764 7707 742 262 196 36 chr12 136808229 136808565 -6977890 - L2 LINE L2 -505 2809 2420 682 168 0 0 chr12 136809130 136809237 -6977218 + FRAM SINE Alu 45 151 -25 1822 128 8 0 chr12 136809588 136809845 -6976610 + AluSx SINE Alu 53 311 -1 306 301 122 0 chr12 136810009 136810165 -6976290 + L2 LINE L2 2584 2758 -556 4708 182 25 4 chr12 136810176 136811148 -6975307 - L1MA9 LINE L1 -1 6311 5320 211 252 70 42 chr12 136811200 136811343 -6975112 + L2 LINE L2 2814 2960 -312 218 324 40 0 chr12 136811469 136811543 -6974912 + L2 LINE L2 3237 3313 0 248 371 43 0 chr12 136811562 136811702 -6974753 - MIR SINE MIR -44 218 73 1385 283 23 0 chr12 136811702 136812280 -6974175 - L1MEc LINE L1 -3489 2726 2175 335 342 42 58 chr12 136812338 136812578 -6973877 - MLT1H LTR MaLR -200 349 114 661 250 48 0 chr12 136812993 136813161 -6973294 - MER3 DNA MER1_type -78 131 3 1099 191 0 15 chr12 136814176 136814380 -6972075 + MLT1A1 LTR MaLR 5 205 -160 1213 217 41 34 chr12 136814505 136814910 -6971545 - L1ME LINE L1 -565 5601 5197 704 287 8 0 chr12 136815130 136815377 -6971078 + L1M4 LINE L1 4856 5104 -1042 379 240 52 10 chr12 136815415 136815511 -6970944 + MER91C DNA MER1_type 41 140 0 451 302 24 41 chr12 136815652 136815821 -6970634 + MIR3 SINE MIR 20 185 -23 324 290 57 42 chr12 136816130 136816323 -6970132 - L1MEc LINE L1 -6072 324 129 205 225 28 0 chr12 136816329 136816400 -6970055 + (TA)n Simple_repeat Simple_repeat 2 74 0 3484 141 63 14 chr12 136816400 136817093 -6969362 - Tigger3(Golem) DNA MER2_type -1 3028 2302 1884 196 34 40 chr12 136818412 136818918 -6967537 + MLT1D LTR MaLR 3 505 0 1033 128 53 5 chr12 136819646 136819834 -6966621 - MSTA LTR MaLR -48 380 184 249 178 0 0 chr12 136819931 136819976 -6966479 + L1MCc LINE L1 110 154 -6269 1735 236 70 72 chr12 136820289 136821572 -6964883 + L1MCc LINE L1 2641 3927 -3014 255 254 0 0 chr12 136821776 136821831 -6964624 + GA-rich Low_complexity Low_complexity 4 58 0 478 305 4 13 chr12 136821842 136822078 -6964377 + L1MCc LINE L1 4021 4254 -2687 487 244 49 18 chr12 136822127 136822291 -6964164 + L1MCc LINE L1 4274 4442 -2499 2172 122 3 0 chr12 136822316 136822612 -6963843 + AluSp SINE Alu 1 297 -16 392 305 57 7 chr12 136822625 136822766 -6963689 + MIR SINE MIR 98 245 -17 236 211 0 0 chr12 136823508 136823546 -6962909 - Tigger3(Golem) DNA MER2_type -2990 39 2 * 925 269 8 4 chr12 136823546 136823787 -6962668 - MER69 DNA AcHobo -2214 312 71 628 332 54 41 chr12 136824733 136825122 -6961333 + L2 LINE L2 2919 3312 -1 218 308 86 0 chr12 136825139 136825223 -6961232 - MIR SINE MIR -76 132 42 237 287 111 46 chr12 136825867 136825975 -6960480 - L2 LINE L2 -5 3267 3153 22 0 0 0 chr12 136826167 136826189 -6960266 + AT_rich Low_complexity Low_complexity 1 22 0 1125 255 115 25 chr12 136826464 136826950 -6959505 + MLT1F LTR MaLR 13 542 0 1170 302 123 29 chr12 136827834 136828706 -6957749 + L2 LINE L2 2200 3180 -133 1574 200 37 92 chr12 136828706 136829197 -6957258 - MLT1C LTR MaLR -3 464 1 1170 302 123 29 chr12 136829197 136829340 -6957115 + L2 LINE L2 3180 3308 -5 366 300 17 65 chr12 136829391 136829621 -6956834 + L2 LINE L2 2883 3101 -212 218 354 31 24 chr12 136829828 136829955 -6956500 - L2 LINE L2 0 3272 3145 214 195 0 0 chr12 136831193 136831234 -6955221 + T-rich Low_complexity Low_complexity 1 41 0 912 230 37 5 chr12 136831260 136831477 -6954978 + MER58A DNA MER1_type 1 224 0 2443 117 16 16 chr12 136831905 136832280 -6954175 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr12 136832551 136832578 -6953877 + (T)n Simple_repeat Simple_repeat 1 27 0 237 132 0 0 chr12 136832998 136833036 -6953419 + (TATG)n Simple_repeat Simple_repeat 1 38 0 300 254 0 0 chr12 136833036 136833103 -6953352 - L1MC4 LINE L1 -1340 6702 6636 456 213 112 24 chr12 136835049 136835218 -6951237 - MER117 DNA MER1_type -3 194 11 1693 187 0 7 chr12 136837007 136837306 -6949149 - AluJb SINE Alu -15 297 1 555 218 6 35 chr12 136837316 136837486 -6948969 - L1MA10 LINE L1 -2 6332 6168 21 0 0 0 chr12 136837630 136837651 -6948804 + AT_rich Low_complexity Low_complexity 1 21 0 686 168 16 8 chr12 136837652 136837777 -6948678 - AluJb SINE Alu -13 299 174 336 302 0 9 chr12 136838312 136838428 -6948027 - Charlie8 DNA MER1_type -2194 223 109 224 207 35 0 chr12 136838734 136838792 -6947663 + (TA)n Simple_repeat Simple_repeat 2 61 0 488 295 84 5 chr12 136838927 136839117 -6947338 + L2 LINE L2 3109 3313 0 247 230 35 11 chr12 136839840 136839927 -6946528 - HAL1b LINE L1 -67 1281 1193 239 333 8 8 chr12 136840206 136840329 -6946126 - L1ME3 LINE L1 -31 6131 6009 244 309 27 0 chr12 136840366 136840476 -6945979 - L1ME3 LINE L1 -466 5655 5543 266 219 42 17 chr12 136840507 136840626 -6945829 + (TA)n Simple_repeat Simple_repeat 1 122 0 36821 74 12 9 chr12 136840713 136846839 -6939616 - L1PA6 LINE L1 -2 6152 11 459 234 0 0 chr12 136846961 136847132 -6939323 + (TG)n Simple_repeat Simple_repeat 2 172 0 618 207 0 0 chr12 136847145 136847324 -6939131 + (TG)n Simple_repeat Simple_repeat 2 180 0 765 183 0 2 chr12 136847346 136847764 -6938691 + (TG)n Simple_repeat Simple_repeat 1 416 0 3792 192 20 24 chr12 136848233 136849140 -6937315 - L1MB7 LINE L1 0 6184 5282 226 337 11 0 chr12 136849311 136849400 -6937055 + MER102a DNA MER1_type 241 330 0 22 0 0 0 chr12 136849877 136849899 -6936556 + AT_rich Low_complexity Low_complexity 1 22 0 2297 124 21 32 chr12 136850417 136850796 -6935659 - THE1C LTR MaLR 0 375 1 605 297 166 56 chr12 136851212 136852063 -6934392 - L2 LINE L2 -26 3246 2283 1956 145 14 3 chr12 136852401 136852690 -6933765 - AluSx SINE Alu -20 292 1 285 200 31 15 chr12 136852927 136852992 -6933463 - MLT1B LTR MaLR -324 66 1 381 261 23 0 chr12 136853282 136853370 -6933085 + MIR SINE MIR 93 182 -80 3554 137 21 17 chr12 136853370 136853895 -6932560 + MER1A DNA MER1_type 1 527 0 806 247 114 4 chr12 136854033 136854260 -6932195 + MIR SINE MIR 5 256 -6 243 287 43 61 chr12 136854453 136854617 -6931838 - MLT1J2 LTR MaLR -218 232 72 571 234 42 36 chr12 136855582 136855774 -6930681 - L1MC4a LINE L1 -1844 5964 5772 252 301 43 21 chr12 136856924 136857017 -6929438 - L2 LINE L2 -18 3295 3201 755 259 54 49 chr12 136857158 136857191 -6929264 + MER113 DNA MER1_type? 68 99 -422 1665 130 137 8 chr12 136857191 136857453 -6929002 - AluSx SINE Alu -6 296 1 755 259 54 49 chr12 136857453 136857828 -6928627 + MER113 DNA MER1_type? 99 478 -43 567 295 95 10 chr12 136858110 136858310 -6928145 + MIR SINE MIR 46 262 0 260 302 92 57 chr12 136859375 136859520 -6926935 - MER5B DNA MER1_type -33 156 1 197 267 23 58 chr12 136859750 136859836 -6926619 - L2 LINE L2 0 3272 3190 2305 112 19 48 chr12 136860099 136860408 -6926047 - THE1B LTR MaLR 0 364 66 2317 129 48 25 chr12 136860408 136860764 -6925691 - THE1B LTR MaLR 0 364 1 2305 112 19 48 chr12 136860764 136860829 -6925626 - THE1B LTR MaLR -298 66 1 886 222 0 0 chr12 136860961 136861128 -6925327 - AluJb SINE Alu -12 300 134 3530 88 15 0 chr12 136861682 136862136 -6924319 - L1PA13 LINE L1 -7 6156 5696 2187 136 0 0 chr12 136862597 136862906 -6923549 + AluSg SINE Alu 1 309 -1 2108 119 0 3 chr12 136863780 136864066 -6922389 + AluSx SINE Alu 22 306 -6 300 371 59 0 chr12 136864152 136864338 -6922117 - MIR SINE MIR -28 234 38 180 182 0 0 chr12 136864756 136864800 -6921655 + GA-rich Low_complexity Low_complexity 1 44 0 403 186 88 20 chr12 136865108 136865210 -6921245 - MLT1K LTR MaLR -339 249 141 2184 219 27 52 chr12 136865228 136865745 -6920710 - MLT1D LTR MaLR 0 505 2 405 278 81 56 chr12 136866375 136866609 -6919846 + L2 LINE L2 3032 3271 -1 1893 158 0 7 chr12 136866968 136867265 -6919190 + AluSx SINE Alu 1 295 -17 537 270 170 6 chr12 136867498 136867657 -6918798 + MER58A DNA MER1_type 40 224 0 1230 196 5 9 chr12 136868102 136868326 -6918129 - L1PB4 LINE L1 0 6156 5934 540 0 0 0 chr12 136869944 136870004 -6916451 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 599 213 0 19 chr12 136870018 136870126 -6916329 - FLAM_C SINE Alu -36 107 2 520 266 76 5 chr12 136870224 136870408 -6916047 - MLT1L LTR MaLR -76 539 343 21 0 0 0 chr12 136870450 136870471 -6915984 + AT_rich Low_complexity Low_complexity 1 21 0 2037 132 3 3 chr12 136870969 136871264 -6915191 - AluSx SINE Alu -15 297 3 225 195 23 115 chr12 136871297 136871384 -6915071 + Charlie8 DNA MER1_type 96 174 -2243 280 308 13 0 chr12 136871854 136871932 -6914523 - MIR SINE MIR -90 172 94 1723 104 0 5 chr12 136872984 136873206 -6913249 + AluSg SINE Alu 1 221 -89 589 259 51 39 chr12 136873962 136874124 -6912331 + MER113 DNA MER1_type? 262 430 -91 2580 104 11 8 chr12 136874124 136874478 -6911977 - THE1A LTR MaLR 0 355 1 589 259 51 39 chr12 136874478 136874570 -6911885 + MER113 DNA MER1_type? 430 519 -2 225 0 0 0 chr12 136874708 136874733 -6911722 + (CA)n Simple_repeat Simple_repeat 2 26 0 1036 249 65 42 chr12 136875248 136875677 -6910778 + MER113 DNA MER1_type? 73 511 -10 586 333 51 23 chr12 136875710 136876101 -6910354 + MLT1L LTR MaLR 122 523 -92 2220 129 0 0 chr12 136876106 136876409 -6910046 - AluSx SINE Alu -9 303 1 681 24 0 0 chr12 136876737 136876820 -6909635 + (CA)n Simple_repeat Simple_repeat 2 84 0 282 276 9 52 chr12 136877024 136877140 -6909315 - MLT2E LTR ERVL -65 563 453 281 357 27 0 chr12 136877458 136877570 -6908885 - L2 LINE L2 0 3313 3199 259 210 12 12 chr12 136877792 136877873 -6908582 + GA-rich Low_complexity Low_complexity 4 84 0 * 890 138 11 17 chr12 136877858 136878039 -6908416 + G-rich Low_complexity Low_complexity 1 180 0 261 246 108 136 chr12 136880639 136881146 -6905309 + LTR33A LTR ERVL 12 504 -19 1305 217 7 27 chr12 136881183 136881483 -6904972 - MLT1A2 LTR MaLR -12 362 69 631 287 123 23 chr12 136881898 136882415 -6904040 + L1ME3 LINE L1 5306 5886 -276 24 32 0 0 chr12 136882443 136882474 -6903981 + AT_rich Low_complexity Low_complexity 1 31 0 467 263 76 6 chr12 136882547 136882718 -6903737 + MER113 DNA MER1_type? 231 413 -108 659 217 56 110 chr12 136882977 136883351 -6903104 + MLT1F1 LTR MaLR 172 525 -42 2161 106 26 3 chr12 136883455 136883757 -6902698 - AluSc SINE Alu 0 309 1 21 0 0 0 chr12 136883760 136883781 -6902674 + AT_rich Low_complexity Low_complexity 1 21 0 382 185 0 0 chr12 136884912 136884977 -6901478 - MLT1A2 LTR MaLR -300 65 1 350 276 38 9 chr12 136885193 136885298 -6901157 + L2 LINE L2 3202 3309 -4 351 248 212 0 chr12 136886212 136886325 -6900130 + MIR SINE MIR 113 249 -13 2552 166 34 6 chr12 136886390 136887101 -6899354 - L1P5 LINE L1 -642 5512 4781 454 270 44 13 chr12 136887133 136887292 -6899163 + Charlie8 DNA MER1_type 338 501 -1916 337 317 40 0 chr12 136888155 136888256 -6898199 - L2 LINE L2 -6 3307 3203 564 291 19 0 chr12 136888314 136888472 -6897983 - MIR SINE MIR -29 233 73 336 348 110 14 chr12 136888601 136889020 -6897435 - L2 LINE L2 -358 2956 2498 27 0 0 0 chr12 136889307 136889334 -6897121 + AT_rich Low_complexity Low_complexity 1 27 0 266 333 137 12 chr12 136889374 136889542 -6896913 - MIR SINE MIR -35 227 39 315 0 0 0 chr12 136889552 136889587 -6896868 + (TTA)n Simple_repeat Simple_repeat 1 35 0 432 348 0 0 chr12 136890988 136891126 -6895329 - MIR SINE MIR -119 143 6 2662 126 30 0 chr12 136892001 136892365 -6894090 - THE1C LTR MaLR 0 375 1 891 285 90 61 chr12 136892462 136892872 -6893583 - MLT1J2 LTR MaLR -2 448 27 1777 115 163 88 chr12 136893296 136893670 -6892785 - MER4A LTR ERV1 -2 662 261 235 103 26 26 chr12 136893671 136893710 -6892745 - MER4A LTR ERV1 -572 92 54 23 54 0 0 chr12 136895288 136895325 -6891130 + AT_rich Low_complexity Low_complexity 1 37 0 868 263 42 23 chr12 136896136 136896395 -6890060 + MLT1A1 LTR MaLR 10 273 -92 889 271 4 0 chr12 136896395 136896657 -6889798 - L1P LINE L1 -3225 2921 2659 410 148 0 57 chr12 136896658 136896746 -6889709 + MLT1A1 LTR MaLR 292 374 0 620 224 68 25 chr12 136897072 136897233 -6889222 + MLT1J2 LTR MaLR 2 169 -281 2139 131 0 0 chr12 136897376 136897674 -6888781 + AluSq SINE Alu 5 302 -11 182 351 92 22 chr12 136898993 136899178 -6887277 - L2 LINE L2 -237 3035 2838 262 303 0 11 chr12 136899352 136899441 -6887014 + (TG)n Simple_repeat Simple_repeat 1 88 0 451 313 62 0 chr12 136900664 136900808 -6885647 + MER91A DNA MER1_type 24 176 -20 8510 165 25 6 chr12 136900809 136901826 -6884629 + L1PB1 LINE L1 3369 4366 -1785 233 29 29 0 chr12 136901826 136901860 -6884595 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 8510 165 25 6 chr12 136901860 136903226 -6883229 + L1PB1 LINE L1 4366 5805 -346 270 56 0 0 chr12 136903226 136903262 -6883193 + (CA)n Simple_repeat Simple_repeat 2 37 0 8510 165 25 6 chr12 136903262 136903577 -6882878 + L1PB1 LINE L1 5805 6113 -38 24 0 0 0 chr12 136903577 136903601 -6882854 + AT_rich Low_complexity Low_complexity 1 24 0 419 275 43 43 chr12 136904923 136904974 -6881481 - MER91C DNA MER1_type -1 139 89 2261 227 19 65 chr12 136904974 136905616 -6880839 + LTR9 LTR ERV1 1 612 0 419 275 43 43 chr12 136905616 136905702 -6880753 - MER91C DNA MER1_type -50 90 2 2125 130 3 9 chr12 136906709 136907024 -6879431 + AluSq SINE Alu 1 313 0 30 45 0 0 chr12 136907207 136907251 -6879204 + AT_rich Low_complexity Low_complexity 1 44 0 374 263 58 23 chr12 136907253 136907424 -6879031 - MER104 DNA Tc2 -2 178 2 24 32 0 0 chr12 136907624 136907655 -6878800 + AT_rich Low_complexity Low_complexity 1 31 0 1356 210 68 27 chr12 136907787 136907826 -6878629 - MLT2B1 LTR ERVL -1 519 483 180 0 0 0 chr12 136907826 136907846 -6878609 + (TG)n Simple_repeat Simple_repeat 2 21 0 1356 210 68 27 chr12 136907846 136908177 -6878278 - MLT2B1 LTR ERVL -37 483 56 2509 123 59 10 chr12 136908177 136908585 -6877870 - MSTA LTR MaLR 0 428 1 1356 210 68 27 chr12 136908585 136908643 -6877812 - MLT2B1 LTR ERVL -464 56 2 261 0 0 0 chr12 136909944 136909973 -6876482 + (TG)n Simple_repeat Simple_repeat 2 30 0 2039 132 39 36 chr12 136910387 136910750 -6875705 - THE1B LTR MaLR 0 364 1 1659 93 19 41 chr12 136910782 136911052 -6875403 + MER41A LTR ERV1 291 554 0 2084 152 0 0 chr12 136911704 136912001 -6874454 - AluSx SINE Alu -15 297 1 184 130 43 0 chr12 136912287 136912333 -6874122 + (TA)n Simple_repeat Simple_repeat 1 48 0 221 315 22 0 chr12 136912447 136912536 -6873919 - MIR SINE MIR 0 262 172 23 33 0 0 chr12 136912550 136912580 -6873875 + AT_rich Low_complexity Low_complexity 1 30 0 424 261 112 15 chr12 136912688 136912822 -6873633 - MIR SINE MIR -101 161 15 607 260 90 0 chr12 136915614 136915791 -6870664 - LTR16C LTR ERVL 0 491 299 25 31 0 0 chr12 136916029 136916061 -6870394 + AT_rich Low_complexity Low_complexity 1 32 0 956 175 4 89 chr12 136916146 136916206 -6870249 - L1MB5 LINE L1 -73 6101 6037 2235 125 0 0 chr12 136916206 136916502 -6869953 + AluSx SINE Alu 1 296 -16 956 175 4 89 chr12 136916502 136916698 -6869757 - L1MB5 LINE L1 -137 6037 5867 653 143 109 0 chr12 136916718 136916865 -6869590 + L1M4 LINE L1 5272 5434 -744 2182 71 7 48 chr12 136916914 136917224 -6869231 + AluY SINE Alu 1 297 -14 2330 143 38 58 chr12 136918611 136919107 -6867348 - LTR19A LTR ERV1 0 486 1 389 286 34 71 chr12 136919504 136919742 -6866713 + L2 LINE L2 2826 3054 -218 1671 159 10 10 chr12 136919774 136920082 -6866373 + L1MC1 LINE L1 6009 6316 -17 197 59 59 0 chr12 136920122 136920156 -6866299 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 312 304 125 52 chr12 136920281 136920778 -6865677 + MLT1H LTR MaLR 17 549 0 278 314 20 20 chr12 136921016 136921118 -6865337 - MIR3 SINE MIR -25 183 82 221 219 0 0 chr12 136921310 136921351 -6865104 + (TGG)n Simple_repeat Simple_repeat 1 41 0 221 188 21 0 chr12 136922093 136922141 -6864314 + GA-rich Low_complexity Low_complexity 2 50 0 2345 89 9 0 chr12 136922174 136922500 -6863955 - L1PB1 LINE L1 -2 6149 5821 2295 113 0 0 chr12 136922644 136922946 -6863509 + AluY SINE Alu 1 302 -9 2027 152 11 98 chr12 136923846 136924313 -6862142 - MSTB LTR MaLR 0 426 1 2068 138 0 0 chr12 136924967 136925263 -6861192 - AluSx SINE Alu -16 296 1 1809 179 3 0 chr12 136925659 136925960 -6860495 - AluJo SINE Alu -10 302 1 251 281 192 25 chr12 136926125 136926328 -6860127 + MLT1L LTR MaLR 10 246 -369 295 226 0 0 chr12 136926562 136926615 -6859840 + MLT1D LTR MaLR 3 55 -450 665 222 157 5 chr12 136927109 136927294 -6859161 - MER58A DNA MER1_type -11 213 1 228 275 0 22 chr12 136927340 136927431 -6859024 - L1 LINE L1 -1830 4316 4228 470 253 100 2 chr12 136927436 136927639 -6858816 + L1ME1 LINE L1 5858 6075 -91 296 174 70 0 chr12 136928357 136928443 -6858012 - Charlie5 DNA MER1_type -2475 137 46 1167 200 53 4 chr12 136929692 136929957 -6856498 + MER49 LTR ERV1 1 278 -645 1321 198 37 8 chr12 136930013 136930281 -6856174 + AluJb SINE Alu 35 310 -2 1117 203 46 40 chr12 136930286 136930505 -6855950 + MER4D LTR ERV1 568 791 -112 1868 123 43 27 chr12 136930505 136930806 -6855649 + AluSx SINE Alu 6 311 -1 1117 203 46 40 chr12 136930806 136930912 -6855543 + MER4D LTR ERV1 791 895 -8 793 255 47 75 chr12 136932007 136932501 -6853954 + L1ME3 LINE L1 5556 6035 -127 479 218 0 15 chr12 136932503 136932636 -6853819 + (TATG)n Simple_repeat Simple_repeat 4 134 0 312 256 22 22 chr12 136932642 136932732 -6853723 + L1MC4 LINE L1 6614 6703 -1339 280 225 11 11 chr12 136932733 136932822 -6853633 + (TATG)n Simple_repeat Simple_repeat 2 90 0 332 191 44 0 chr12 136932838 136932906 -6853549 - L1MCa LINE L1 -4361 2065 1995 394 265 96 74 chr12 136933036 136933266 -6853189 - MIR SINE MIR -1 261 27 183 80 0 0 chr12 136934540 136934565 -6851890 + (CATA)n Simple_repeat Simple_repeat 3 27 0 3591 244 69 72 chr12 136935206 136935921 -6850534 + L1MC4a LINE L1 5882 6597 -1211 1037 248 35 0 chr12 136935921 136936151 -6850304 - MER8 DNA MER2_type -1 238 1 3591 244 69 72 chr12 136936151 136936909 -6849546 + L1MC4a LINE L1 6597 7351 -457 2315 94 3 0 chr12 136936909 136937207 -6849248 + AluSx SINE Alu 1 299 -13 3591 244 69 72 chr12 136937207 136937658 -6848797 + L1MC4a LINE L1 7351 7802 -6 333 217 287 9 chr12 136938927 136939042 -6847413 + MIR SINE MIR 83 229 -33 198 0 0 0 chr12 136939112 136939134 -6847321 + (ATG)n Simple_repeat Simple_repeat 2 23 0 1512 231 73 24 chr12 136939194 136939661 -6846794 + MLT1E2 LTR MaLR 137 626 0 591 317 45 16 chr12 136939714 136939957 -6846498 - MIR SINE MIR -8 254 5 2335 83 3 0 chr12 136940140 136940441 -6846014 - AluSp SINE Alu -11 302 1 2659 33 0 0 chr12 136940628 136940932 -6845523 + AluYb8 SINE Alu 2 305 -13 3225 166 39 33 chr12 136941390 136942078 -6844377 - L1PB4 LINE L1 -1 6155 5464 273 127 0 63 chr12 136942078 136942141 -6844314 + L1PB4 LINE L1 5412 5470 -830 1918 169 33 39 chr12 136942555 136943116 -6843339 - MLT2A2 LTR ERVL 0 554 1 2950 131 62 26 chr12 136943116 136943660 -6842795 - HERVL-A2 LTR ERVL 0 5654 5091 1415 218 24 53 chr12 136944164 136944713 -6841742 + MER82 DNA MER2_type 32 647 -6 283 243 128 61 chr12 136944715 136944863 -6841592 - LTR33 LTR ERVL -89 432 275 398 305 18 49 chr12 136944934 136945098 -6841357 - MIR SINE MIR -91 171 13 1855 147 133 48 chr12 136945201 136945622 -6840833 - LTR46 LTR ERV1 0 460 4 215 313 21 42 chr12 136945758 136945854 -6840601 - L2 LINE L2 -1 3271 3178 1852 161 3 30 chr12 136946734 136947038 -6839417 + AluJo SINE Alu 2 297 -15 228 313 107 18 chr12 136947148 136947260 -6839195 + MLT1I LTR MaLR 99 220 -189 194 305 17 17 chr12 136947763 136947822 -6838633 - MIR3 SINE MIR -13 195 137 206 400 126 6 chr12 136947969 136948144 -6838311 - L2 LINE L2 -168 3104 2909 349 191 122 52 chr12 136949413 136949528 -6836927 + L1ME4a LINE L1 5258 5380 -2615 23 33 0 0 chr12 136949574 136949604 -6836851 + AT_rich Low_complexity Low_complexity 1 30 0 2530 129 0 0 chr12 136949667 136950031 -6836424 - THE1B LTR MaLR 0 364 1 277 269 137 76 chr12 136950031 136950257 -6836198 + L1ME4a LINE L1 5539 5750 -371 382 322 43 72 chr12 136950257 136950605 -6835850 + MER102b DNA MER1_type 4 341 0 277 269 137 76 chr12 136950605 136950894 -6835561 + L1ME4a LINE L1 5750 6089 -32 364 251 40 116 chr12 136952344 136952543 -6833912 + MER102b DNA MER1_type 143 326 -15 1343 173 20 12 chr12 136952552 136952806 -6833649 - AluJo SINE Alu -14 298 43 1370 206 119 15 chr12 136952951 136953345 -6833110 + Charlie1b DNA MER1_type 73 507 -16 1236 98 6 6 chr12 136953490 136953663 -6832792 - L1PA13 LINE L1 -7 6156 5984 294 206 0 0 chr12 136953699 136953762 -6832693 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 281 214 95 48 chr12 136953870 136953954 -6832501 - MIR3 SINE MIR -9 199 112 224 120 20 0 chr12 136955031 136955081 -6831374 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1648 156 41 129 chr12 136955285 136955757 -6830698 - L1M4 LINE L1 -493 5685 5173 2428 76 0 3 chr12 136955757 136956058 -6830397 + AluY SINE Alu 1 300 -11 198 0 0 0 chr12 136956058 136956080 -6830375 + (TA)n Simple_repeat Simple_repeat 2 23 0 1648 156 41 129 chr12 136956080 136956106 -6830349 - L1M4 LINE L1 -911 5267 5240 928 233 23 9 chr12 136956099 136956318 -6830137 + L1MB5 LINE L1 5921 6142 -32 * 1692 176 0 21 chr12 136956318 136956607 -6829848 + AluJb SINE Alu 1 283 -29 545 166 36 72 chr12 136957182 136957321 -6829134 + MER106B DNA MER1_type 926 1059 0 186 71 0 0 chr12 136957335 136957363 -6829092 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 331 75 36 chr12 136957479 136957757 -6828698 + L1MC/D LINE L1 5372 5660 -2148 584 290 54 18 chr12 136957991 136958215 -6828240 - MIR SINE MIR -2 260 29 228 214 83 60 chr12 136958355 136958439 -6828016 - MIR SINE MIR -71 191 106 542 269 171 65 chr12 136958691 136959152 -6827303 - MLT1G LTR MaLR 0 590 46 226 222 19 0 chr12 136959369 136959423 -6827032 - L1MC/D LINE L1 -1875 5933 5879 872 295 14 70 chr12 136959530 136959889 -6826566 - MER102b DNA MER1_type -1 340 2 2243 56 0 0 chr12 136960743 136961010 -6825445 - AluY SINE Alu 0 311 45 318 314 80 22 chr12 136961411 136961558 -6824897 + MIR SINE MIR 3 156 -64 715 200 7 0 chr12 136961684 136961834 -6824621 - L1MA6 LINE L1 0 6300 6150 2156 92 11 0 chr12 136962018 136962330 -6824125 + AluSq SINE Alu 1 315 0 3119 161 27 22 chr12 136963008 136963561 -6822894 - MER41D LTR ERV1 0 557 2 1833 158 24 0 chr12 136964217 136964508 -6821947 - AluSx SINE Alu -14 298 1 1331 224 52 23 chr12 136965402 136965751 -6820704 - MLT1B LTR MaLR 0 390 32 2019 152 0 0 chr12 136965751 136966076 -6820379 + AluSx SINE Alu 1 312 0 2096 143 14 16 chr12 136966608 136966971 -6819484 + L1MA9 LINE L1 5949 6310 -2 4252 136 32 3 chr12 136967403 136968029 -6818426 + LTR9B LTR ERV1 1 644 0 294 249 127 48 chr12 136968552 136968717 -6817738 + MLT1K LTR MaLR 376 553 -35 6401 73 5 19 chr12 136969334 136970125 -6816330 - LTR17 LTR ERV1 0 780 1 1747 149 166 57 chr12 136970259 136970627 -6815828 - MER4A LTR ERV1 0 664 257 328 89 0 0 chr12 136970623 136970668 -6815787 - MER4A LTR ERV1 -566 98 54 * 1601 98 47 17 chr12 136970988 136971222 -6815233 + THE1B LTR MaLR 124 364 0 1999 127 0 56 chr12 136972157 136972481 -6813974 + AluSx SINE Alu 7 312 0 220 256 39 26 chr12 136972833 136972911 -6813544 + MIR SINE MIR 59 137 -125 2158 120 3 3 chr12 136972933 136973232 -6813223 + AluSc SINE Alu 1 299 -10 5083 57 0 3 chr12 136973926 136974519 -6811936 - LTR10C LTR ERV1 0 591 1 664 235 33 7 chr12 136978879 136979032 -6807423 - MIR SINE MIR -61 201 45 1993 158 0 0 chr12 136979290 136979593 -6806862 + AluJb SINE Alu 3 305 -7 1078 64 41 0 chr12 136979615 136979786 -6806669 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 384 277 108 62 chr12 136979810 136980005 -6806450 - L2 LINE L2 -6 3307 3104 224 316 52 37 chr12 136980035 136980171 -6806284 + L2 LINE L2 2909 3046 -226 393 315 94 25 chr12 136980205 136980408 -6806047 - L2 LINE L2 -416 2898 2682 712 201 8 5 chr12 136980430 136980810 -6805645 + (TAGA)n Simple_repeat Simple_repeat 1 381 0 615 62 31 0 chr12 136981455 136981552 -6804903 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 264 309 55 36 chr12 136982681 136982791 -6803664 - MIR3 SINE MIR -85 123 12 195 244 0 0 chr12 136983400 136983441 -6803014 + L2 LINE L2 3264 3304 -9 962 299 100 9 chr12 136983445 136983876 -6802579 - L2 LINE L2 -5 3308 2839 267 250 78 69 chr12 136984207 136984323 -6802132 - MLT1L LTR MaLR -200 415 299 1422 178 6 65 chr12 136984347 136984668 -6801787 - AluJo SINE Alu -10 302 1 543 272 14 0 chr12 136984830 136984977 -6801478 - MIR SINE MIR -22 240 92 569 186 47 16 chr12 136985220 136985349 -6801106 + L1ME LINE L1 5553 5685 -485 303 255 34 74 chr12 136987486 136987635 -6798820 - MIR SINE MIR -64 198 56 240 271 131 9 chr12 136987608 136987715 -6798740 + L2 LINE L2 3192 3311 -2 * 450 256 8 50 chr12 136987752 136987766 -6798689 - MER20 DNA MER1_type 0 219 206 1751 144 110 26 chr12 136987766 136988112 -6798343 - THE1C LTR MaLR 0 375 1 450 256 8 50 chr12 136988112 136988218 -6798237 - MER20 DNA MER1_type -13 206 104 24 53 0 0 chr12 136988680 136988718 -6797737 + AT_rich Low_complexity Low_complexity 1 38 0 355 299 36 108 chr12 136989001 136989252 -6797203 + MIR SINE MIR 28 260 -2 21 0 0 0 chr12 136991481 136991502 -6794953 + AT_rich Low_complexity Low_complexity 1 21 0 1642 77 56 0 chr12 136991627 136991860 -6794595 - L1P LINE L1 -1108 5038 4793 2689 67 3 3 chr12 136991860 136992187 -6794268 + L1PA7 LINE L1 5822 6148 -6 367 311 57 17 chr12 136992187 136992364 -6794091 + L1MEd LINE L1 913 1096 -5023 358 303 55 12 chr12 136992368 136992533 -6793922 - MLT1G LTR MaLR 0 590 419 316 309 125 0 chr12 136992719 136992871 -6793584 - MLT1F1 LTR MaLR -394 173 3 444 308 46 23 chr12 136992882 136992957 -6793498 + L1MCa LINE L1 54 126 -5919 432 0 0 0 chr12 136992957 136993005 -6793450 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 444 308 46 23 chr12 136993005 136993163 -6793292 + L1MCa LINE L1 126 208 -5837 5453 132 42 19 chr12 136993165 136994600 -6791855 + L1PA16 LINE L1 4700 6157 -9 1645 243 135 23 chr12 136994615 136994953 -6791502 + L1MC3 LINE L1 5284 5261 -1030 1702 183 25 3 chr12 136994953 136995238 -6791217 + AluSx SINE Alu 1 291 -21 1645 243 135 23 chr12 136995238 136995481 -6790974 + L1MC3 LINE L1 5260 5474 -817 1415 183 16 61 chr12 136995478 136995655 -6790800 + L1MC3 LINE L1 6139 6170 -174 * 2618 121 27 0 chr12 136995655 136996020 -6790435 - THE1C LTR MaLR 0 375 1 1415 183 16 61 chr12 136996020 136996188 -6790267 + L1MC3 LINE L1 6170 6344 0 372 275 76 85 chr12 136996215 136996465 -6789990 + L1MCa LINE L1 1610 1861 -4884 1581 171 10 27 chr12 136996465 136996757 -6789698 + AluJb SINE Alu 1 287 -25 288 0 0 0 chr12 136996759 136996791 -6789664 + (CA)n Simple_repeat Simple_repeat 2 33 0 372 275 76 85 chr12 136996791 136996832 -6789623 + L1MCa LINE L1 1862 1902 -4843 986 181 10 30 chr12 136996832 136997031 -6789424 + L1PB4 LINE L1 5955 6149 -7 372 275 76 85 chr12 136997031 136997183 -6789272 + L1MCa LINE L1 1902 2053 -4692 2449 146 92 3 chr12 136997200 136997591 -6788864 - MSTB LTR MaLR 0 426 1 445 270 113 55 chr12 136998314 136998764 -6787691 + L1MCa LINE L1 2903 3388 -3176 2164 125 0 0 chr12 136998764 136999060 -6787395 + AluSx SINE Alu 1 296 -16 445 270 113 55 chr12 136999060 136999123 -6787332 + L1MCa LINE L1 3388 3446 -3118 1787 151 14 14 chr12 136999690 136999981 -6786474 - AluJo SINE Alu -21 291 1 2461 53 0 3 chr12 137001056 137001358 -6785097 - AluY SINE Alu -10 301 1 892 121 29 0 chr12 137002487 137002660 -6783795 + CT-rich Low_complexity Low_complexity 1 178 0 228 35 0 0 chr12 137002660 137002689 -6783766 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 609 268 84 73 chr12 137002695 137003076 -6783379 - L2 LINE L2 -30 3283 2899 1697 130 17 83 chr12 137003906 137004244 -6782211 + AluSx SINE Alu 4 321 0 2061 90 19 0 chr12 137005590 137005857 -6780598 + AluSx SINE Alu 37 308 -4 1273 97 0 6 chr12 137005859 137006034 -6780421 + AluSg/x SINE Alu 130 303 -9 198 0 0 0 chr12 137006034 137006056 -6780399 + (TA)n Simple_repeat Simple_repeat 2 23 0 1398 191 0 8 chr12 137006180 137006421 -6780034 + MER8 DNA MER2_type 1 239 0 625 266 111 73 chr12 137006717 137007169 -6779286 - MLT1J LTR MaLR -40 471 3 199 324 63 27 chr12 137007507 137007618 -6778837 + MIR SINE MIR 146 260 -2 1831 174 23 12 chr12 137008275 137008619 -6777836 - MER7A DNA MER2_type 0 346 1 1611 237 45 7 chr12 137009652 137010099 -6776356 + L1MD2 LINE L1 5894 6357 -2 1799 138 148 97 chr12 137010157 137010716 -6775739 - LTR4 LTR ERV1 0 588 1 2069 113 0 52 chr12 137010854 137011183 -6775272 + AluSx SINE Alu 1 312 0 1702 199 0 3 chr12 137011227 137011523 -6774932 - AluJb SINE Alu -17 295 1 243 0 0 0 chr12 137011978 137012005 -6774450 + (CA)n Simple_repeat Simple_repeat 2 28 0 333 78 0 0 chr12 137012007 137012058 -6774397 - MADE1 DNA Mariner 0 80 30 222 37 0 0 chr12 137012093 137012120 -6774335 + (TA)n Simple_repeat Simple_repeat 1 27 0 1904 198 34 9 chr12 137012120 137012565 -6773890 - MER65C LTR ERV1 -2 459 4 2120 126 0 10 chr12 137012674 137012983 -6773472 - AluSg1 SINE Alu -3 306 1 770 211 103 17 chr12 137013052 137013284 -6773171 - MER82 DNA MER2_type -401 252 1 1043 190 9 30 chr12 137014491 137014723 -6771732 - L1MC2 LINE L1 -11 6333 6107 224 0 0 61 chr12 137014809 137014842 -6771613 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 441 116 47 0 chr12 137014876 137014962 -6771493 + AluJ/FRAM SINE Alu 221 310 -2 1111 208 40 4 chr12 137015099 137015373 -6771082 - L1MC2 LINE L1 -240 6104 5821 228 245 56 63 chr12 137015549 137015692 -6770763 - MER112 DNA MER1_type -87 173 32 490 276 97 28 chr12 137015927 137016144 -6770311 - MIR SINE MIR -11 251 20 513 331 59 18 chr12 137016493 137016765 -6769690 - L2 LINE L2 -3 3310 3028 2142 121 7 0 chr12 137016780 137017087 -6769368 + AluSx SINE Alu 1 309 -3 310 242 74 11 chr12 137018658 137018753 -6767702 + MLT1K LTR MaLR 40 140 -448 2231 102 3 7 chr12 137018785 137019088 -6767367 - AluSp SINE Alu -9 304 3 218 426 17 0 chr12 137019379 137019494 -6766961 + L2 LINE L2 3188 3304 -9 1528 165 0 112 chr12 137019515 137019855 -6766600 + AluJb SINE Alu 1 302 0 302 314 29 0 chr12 137019890 137019992 -6766463 + MLT1K LTR MaLR 422 526 -62 2376 147 29 7 chr12 137020243 137020657 -6765798 - L1PA16 LINE L1 0 6166 5744 1037 215 98 30 chr12 137020658 137021026 -6765429 + L1 LINE L1 3977 4369 -1777 2548 48 0 16 chr12 137021434 137021750 -6764705 + AluY SINE Alu 1 311 0 417 348 32 5 chr12 137023596 137023783 -6762672 + MIR SINE MIR 71 262 0 354 296 58 45 chr12 137024670 137024854 -6761601 - MER102b DNA MER1_type -51 290 101 1801 110 0 0 chr12 137024854 137025091 -6761364 - AluSx SINE Alu -32 280 44 354 296 58 45 chr12 137025091 137025129 -6761326 - MER102b DNA MER1_type -240 101 65 493 253 14 7 chr12 137025145 137025291 -6761164 - L1M4 LINE L1 -1284 5673 5527 342 199 20 20 chr12 137025379 137025525 -6760930 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 3198 244 51 33 chr12 137025713 137026459 -6759996 - L1M4 LINE L1 -4683 2276 1545 944 85 0 21 chr12 137026459 137026600 -6759855 - L1PA8 LINE L1 -2 6170 6033 3198 244 51 33 chr12 137026600 137027450 -6759005 - L1M4 LINE L1 -5414 1545 667 1323 296 121 6 chr12 137027465 137027976 -6758479 - L1M4 LINE L1 -6276 583 14 2175 137 0 0 chr12 137028089 137028388 -6758067 + AluSx SINE Alu 1 299 -13 2036 137 0 19 chr12 137028810 137029124 -6757331 + AluSx SINE Alu 5 312 0 461 237 62 62 chr12 137029152 137029489 -6756966 + L1M4 LINE L1 4310 4646 -1500 666 85 0 0 chr12 137029740 137029834 -6756621 - MER85 DNA T2_type -2 137 44 483 84 0 0 chr12 137031755 137031826 -6754629 - L1PA13 LINE L1 -96 6067 5997 265 252 34 34 chr12 137031843 137031962 -6754493 + MER63D DNA MER1_type 324 442 -619 335 242 84 21 chr12 137032043 137032138 -6754317 + MER63D DNA MER1_type 958 1058 -2 422 289 39 0 chr12 137032568 137032672 -6753783 + MIR SINE MIR 34 141 -121 870 264 131 36 chr12 137032762 137033236 -6753219 - LTR33 LTR ERVL 0 521 3 307 239 118 29 chr12 137033484 137033589 -6752866 - MIR SINE MIR -59 203 87 231 303 50 10 chr12 137033737 137033836 -6752619 - L2 LINE L2 -42 3271 3169 223 313 100 25 chr12 137033931 137034011 -6752444 - L2 LINE L2 -269 3044 2959 2063 100 35 0 chr12 137034042 137034209 -6752246 - AluY SINE Alu -12 299 116 423 0 0 0 chr12 137034209 137034256 -6752199 + (TG)n Simple_repeat Simple_repeat 2 48 0 2063 100 35 0 chr12 137034256 137034377 -6752078 - AluY SINE Alu -195 116 1 301 344 96 13 chr12 137034402 137034559 -6751896 + MIR SINE MIR 81 250 -12 231 88 0 0 chr12 137035494 137035528 -6750927 + (CA)n Simple_repeat Simple_repeat 2 35 0 298 222 0 0 chr12 137036259 137036340 -6750115 - L1M4 LINE L1 -3639 2507 2427 527 278 66 3 chr12 137036356 137036644 -6749811 - L1M4 LINE L1 -3624 2522 2217 1101 150 115 28 chr12 137036828 137036964 -6749491 - L1MA9 LINE L1 0 6312 6189 333 0 0 0 chr12 137036964 137037001 -6749454 + (TG)n Simple_repeat Simple_repeat 2 38 0 1101 150 115 28 chr12 137037001 137037151 -6749304 - L1MA9 LINE L1 -123 6189 6001 236 239 154 31 chr12 137038279 137038409 -6748046 + MIR SINE MIR 116 261 -1 186 222 0 0 chr12 137038878 137038932 -6747523 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1487 153 45 31 chr12 137039033 137039320 -6747135 - AluJo SINE Alu -21 291 1 196 260 170 40 chr12 137040263 137040363 -6746092 + MIR3 SINE MIR 83 195 -13 82 0 0 0 chr12 137040363 137040445 -6746010 + AT_rich Low_complexity Low_complexity 1 82 0 519 86 68 6 chr12 137040445 137040607 -6745848 + (TA)n Simple_repeat Simple_repeat 1 172 0 278 106 59 35 chr12 137040645 137040815 -6745640 + (TA)n Simple_repeat Simple_repeat 1 174 0 265 80 40 0 chr12 137040907 137040957 -6745498 - L1MA9 LINE L1 0 6312 6261 1074 155 0 0 chr12 137040958 137041113 -6745342 + AluSg/x SINE Alu 131 285 -25 216 86 0 0 chr12 137041119 137041154 -6745301 + (TA)n Simple_repeat Simple_repeat 2 36 0 1534 181 50 100 chr12 137041200 137041283 -6745172 - L1MA9 LINE L1 -59 6253 6167 243 0 0 0 chr12 137041283 137041310 -6745145 + (TG)n Simple_repeat Simple_repeat 2 28 0 1534 181 50 100 chr12 137041310 137041728 -6744727 - L1MA9 LINE L1 -145 6167 5777 221 282 26 13 chr12 137041729 137041807 -6744648 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 2560 142 135 36 chr12 137041807 137042186 -6744269 - MER7C DNA MER2_type -2426 602 151 2189 92 17 3 chr12 137042186 137042479 -6743976 - AluSq SINE Alu -16 297 1 2560 142 135 36 chr12 137042479 137042647 -6743808 - MER7C DNA MER2_type -2877 151 1 206 105 26 0 chr12 137042651 137042689 -6743766 + (TG)n Simple_repeat Simple_repeat 2 40 0 2068 186 29 30 chr12 137042733 137043407 -6743048 - L1MA9 LINE L1 -532 5780 5105 315 247 103 81 chr12 137043456 137043679 -6742776 - L1M4 LINE L1 -2846 3300 3073 1939 232 19 6 chr12 137043774 137044292 -6742163 - L1MA9 LINE L1 -1016 5130 4606 25 0 0 0 chr12 137045204 137045229 -6741226 + AT_rich Low_complexity Low_complexity 1 25 0 248 145 91 0 chr12 137045760 137045826 -6740629 - L1MA9 LINE L1 -1523 4623 4553 21 0 0 0 chr12 137046093 137046114 -6740341 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 137047158 137047180 -6739275 + AT_rich Low_complexity Low_complexity 1 22 0 1354 213 25 49 chr12 137048375 137048741 -6737714 + MLT1A1 LTR MaLR 1 357 -8 193 267 0 0 chr12 137049247 137049292 -6737163 + L2 LINE L2 3265 3309 -4 22 0 0 0 chr12 137049381 137049403 -6737052 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr12 137049459 137049488 -6736967 + AT_rich Low_complexity Low_complexity 1 29 0 2036 143 3 10 chr12 137049488 137049795 -6736660 + AluSx SINE Alu 1 305 -7 261 256 24 32 chr12 137050281 137050406 -6736049 + L1MEc LINE L1 58 181 -6215 341 295 92 58 chr12 137050479 137050804 -6735651 + L1MEc LINE L1 281 616 -5780 1973 110 14 133 chr12 137050804 137051197 -6735258 - Tigger4(Zombi) DNA MER2_type 0 2731 2404 1271 207 53 28 chr12 137051197 137051482 -6734973 - AluJo SINE Alu -20 292 1 1973 110 14 133 chr12 137051482 137051570 -6734885 - Tigger4(Zombi) DNA MER2_type -327 2404 2307 500 129 24 0 chr12 137051570 137051655 -6734800 - Tigger4(Zombi) DNA MER2_type -2644 87 1 749 260 16 8 chr12 137051702 137051952 -6734503 + L1MEc LINE L1 662 913 -5483 1484 204 3 44 chr12 137051956 137052295 -6734160 - MLT1A1 LTR MaLR -3 362 38 208 279 93 47 chr12 137052302 137052388 -6734067 - L2 LINE L2 -46 3226 3137 1672 187 0 3 chr12 137052868 137053151 -6733304 - AluJb SINE Alu -30 282 1 1093 143 11 11 chr12 137053935 137054117 -6732338 + L1MA3 LINE L1 6124 6305 0 242 364 19 29 chr12 137054143 137054352 -6732103 - L2 LINE L2 -190 3082 2876 1684 180 88 70 chr12 137054354 137054816 -6731639 - MER66A LTR ERV1 0 478 97 604 272 31 55 chr12 137055192 137055446 -6731009 - MIR SINE MIR 0 262 15 257 290 67 90 chr12 137055596 137055851 -6730604 - MER102a DNA MER1_type -5 325 77 438 324 120 13 chr12 137057241 137057476 -6728979 - MER113 DNA MER1_type? -1 520 245 3982 95 28 0 chr12 137057476 137058013 -6728442 + L1PA13 LINE L1 5612 6163 0 438 324 120 13 chr12 137058013 137058073 -6728382 - MER113 DNA MER1_type? -276 245 193 367 254 9 64 chr12 137058073 137058157 -6728298 - MLT2B3 LTR ERVL 0 628 550 913 231 79 0 chr12 137058157 137058360 -6728095 + MER20 DNA MER1_type 1 219 0 367 254 9 64 chr12 137058360 137058385 -6728070 - MLT2B3 LTR ERVL -78 550 525 801 293 60 0 chr12 137058424 137058656 -6727799 - MLT2E LTR ERVL -329 299 54 322 313 82 47 chr12 137059017 137059250 -6727205 + MLT1J LTR MaLR 95 335 -176 730 229 41 37 chr12 137059849 137060067 -6726388 + MER20 DNA MER1_type 1 219 0 1083 235 112 0 chr12 137060823 137061100 -6725355 + REP3 LTR ERV 1 308 -254 3943 47 0 0 chr12 137061203 137061653 -6724802 + L1PA6 LINE L1 5702 6151 -3 307 239 0 15 chr12 137061663 137061730 -6724725 + REP3 LTR ERV 482 547 -15 185 329 14 0 chr12 137062126 137062199 -6724256 + MIR SINE MIR 40 113 -95 1946 132 0 14 chr12 137062603 137062899 -6723556 + AluSx SINE Alu 16 307 -5 2448 251 33 19 chr12 137062899 137063679 -6722776 + L1M4 LINE L1 4321 5111 -1035 516 160 40 10 chr12 137064068 137064168 -6722287 + L1MB7 LINE L1 6069 6171 -13 1091 187 20 113 chr12 137064975 137065148 -6721307 + L1MB8 LINE L1 4477 4596 -1550 2160 160 75 120 chr12 137065148 137065533 -6720922 - MER7C DNA MER2_type -2426 602 256 188 67 33 0 chr12 137065533 137065563 -6720892 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 2160 160 75 120 chr12 137065563 137065808 -6720647 - MER7C DNA MER2_type -2772 256 1 1091 187 20 113 chr12 137065808 137066024 -6720431 + L1MB8 LINE L1 4596 4830 -1316 * 2487 200 50 58 chr12 137066017 137066525 -6719930 + L1MB8 LINE L1 5482 5985 -193 2267 135 48 25 chr12 137066525 137066881 -6719574 + THE1B LTR MaLR 1 364 0 2487 200 50 58 chr12 137066881 137067066 -6719389 + L1MB8 LINE L1 5985 6170 -8 2195 87 6 26 chr12 137068365 137068677 -6717778 - AluSp SINE Alu -7 306 1 224 98 0 24 chr12 137069304 137069345 -6717110 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 860 264 80 20 chr12 137069352 137069602 -6716853 - MLT2B3 LTR ERVL -40 514 250 542 264 155 0 chr12 137070724 137070879 -6715576 - MIR SINE MIR -77 185 7 237 288 0 38 chr12 137071081 137071161 -6715294 - LTR67 LTR ERVL -478 79 3 1261 143 114 0 chr12 137071342 137071552 -6714903 - AluSx SINE Alu -21 291 58 2073 136 3 0 chr12 137071553 137071854 -6714601 + AluSx SINE Alu 9 310 -2 310 361 42 14 chr12 137072153 137072366 -6714089 - Charlie8 DNA MER1_type -2198 219 1 428 136 0 0 chr12 137072558 137072617 -6713838 - Tigger5 DNA MER2_type 0 2323 2265 3484 155 13 69 chr12 137073943 137074651 -6711804 - LTR8 LTR ERV1 -23 668 1 1578 108 128 0 chr12 137075251 137075509 -6710946 - MER41B LTR ERV1 -344 291 1 1307 176 0 21 chr12 137075518 137075756 -6710699 + MER41B LTR ERV1 273 505 -130 740 136 0 0 chr12 137075756 137075866 -6710589 - AluY SINE Alu -1 310 201 4023 191 56 14 chr12 137075866 137076692 -6709763 + MER89-int LTR ERV1 5341 6200 -601 1933 130 0 42 chr12 137076700 137076833 -6709622 + AluSx SINE Alu 5 142 -170 2259 98 3 7 chr12 137076833 137077128 -6709327 + AluSc SINE Alu 1 294 -15 1933 130 0 42 chr12 137077128 137077302 -6709153 + AluSx SINE Alu 142 299 -13 275 210 48 0 chr12 137077321 137077383 -6709072 + MER89-int LTR ERV1 6189 6253 -548 242 298 88 0 chr12 137078480 137078594 -6707861 + MIR SINE MIR 16 139 -123 187 292 77 54 chr12 137078829 137078959 -6707496 - MIR SINE MIR -129 133 1 300 253 0 36 chr12 137079158 137079241 -6707214 - L1MC5 LINE L1 -44 7917 7838 482 319 121 44 chr12 137080287 137080602 -6705853 + L2 LINE L2 1548 1837 -1477 1977 132 31 0 chr12 137080602 137080890 -6705565 + AluSx SINE Alu 1 297 -15 482 319 121 44 chr12 137080890 137081145 -6705310 + L2 LINE L2 1837 2162 -1152 209 255 20 0 chr12 137081180 137081231 -6705224 + MER5A DNA MER1_type 40 91 -98 882 352 76 37 chr12 137081302 137082243 -6704212 + L2 LINE L2 2178 3229 -43 230 278 40 24 chr12 137082830 137082956 -6703499 + L1M4 LINE L1 3877 4004 -2142 * 288 265 174 0 chr12 137082954 137083086 -6703369 + HAL1 LINE L1 1310 1464 -1043 1198 278 93 30 chr12 137083526 137084163 -6702292 + HAL1 LINE L1 1482 2158 -349 1143 233 19 0 chr12 137084308 137084566 -6701889 + MER89 LTR ERV1 273 535 -24 417 162 0 0 chr12 137084568 137084636 -6701819 + MER89 LTR ERV1 492 559 0 489 260 135 40 chr12 137084636 137084963 -6701492 + HAL1 LINE L1 2150 2507 0 343 56 37 0 chr12 137085281 137085335 -6701120 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 422 108 14 0 chr12 137085437 137085511 -6700944 + (CCCTAA)n Simple_repeat Simple_repeat 4 78 0 541 288 99 0 chr12 137085524 137085715 -6700740 + MIR SINE MIR 52 261 -1 416 273 56 102 chr12 137086073 137086516 -6699939 - Charlie8 DNA MER1_type -1985 432 10 2151 109 0 0 chr12 137086663 137086948 -6699507 - THE1B LTR MaLR 0 364 80 4700 145 33 85 chr12 137086948 137088537 -6697918 + pTR5 LTR ERV1 747 2438 0 575 138 0 0 chr12 137088540 137088627 -6697828 - THE1B LTR MaLR -277 87 1 26 0 0 0 chr12 137088865 137088891 -6697564 + AT_rich Low_complexity Low_complexity 1 26 0 400 221 244 0 chr12 137090220 137090351 -6696104 + MER106B DNA MER1_type 897 1059 0 21 0 0 0 chr12 137092546 137092567 -6693888 + AT_rich Low_complexity Low_complexity 1 21 0 180 325 50 50 chr12 137093075 137093155 -6693300 + MIR SINE MIR 20 99 -109 327 306 61 20 chr12 137093527 137093674 -6692781 - L1MEd LINE L1 -5935 184 32 1549 182 34 20 chr12 137093693 137093990 -6692465 - AluJo SINE Alu 0 312 12 1276 282 98 60 chr12 137094385 137094468 -6691987 + MLT1G1 LTR MaLR 3 81 -514 2047 152 7 0 chr12 137094468 137094778 -6691677 - AluSx SINE Alu 0 312 1 1276 282 98 60 chr12 137094778 137095265 -6691190 + MLT1G1 LTR MaLR 81 595 0 1999 153 3 0 chr12 137095623 137095923 -6690532 - AluSx SINE Alu -11 301 1 245 250 176 0 chr12 137096514 137096582 -6689873 + L2 LINE L2 3191 3270 -2 519 267 23 41 chr12 137096606 137096778 -6689677 - MIR SINE MIR -72 190 22 252 0 0 0 chr12 137097847 137097875 -6688580 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr12 137098816 137098841 -6687614 + AT_rich Low_complexity Low_complexity 1 25 0 675 162 0 27 chr12 137099227 137099338 -6687117 + FLAM_C SINE Alu 27 134 -9 264 160 0 0 chr12 137099876 137099926 -6686529 - L1MA9 LINE L1 -34 6278 6229 920 245 18 86 chr12 137099989 137100373 -6686082 + L1MA9 LINE L1 5816 6173 -139 1778 159 83 14 chr12 137100387 137100738 -6685717 - THE1C LTR MaLR 0 375 1 713 134 8 24 chr12 137101670 137101797 -6684658 - L1M LINE L1 -911 5380 5256 * 2031 166 33 3 chr12 137101794 137102161 -6684294 - L1 LINE L1 -1150 4996 4619 325 308 111 74 chr12 137102818 137103167 -6683288 + L2 LINE L2 2702 3075 -238 270 305 0 24 chr12 137104839 137104921 -6681534 - L2 LINE L2 -17 3255 3176 1784 155 0 20 chr12 137105755 137106052 -6680403 - AluJb SINE Alu -21 291 1 248 306 46 19 chr12 137106257 137106365 -6680090 + MIR SINE MIR 47 157 -105 512 287 59 48 chr12 137106450 137106739 -6679716 + MLT1K LTR MaLR 37 328 -260 250 264 46 0 chr12 137106885 137106972 -6679483 - MER69 DNA AcHobo 0 2526 2436 321 26 0 0 chr12 137107024 137107062 -6679393 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr12 137107081 137107104 -6679351 + AT_rich Low_complexity Low_complexity 1 23 0 2000 174 13 3 chr12 137107106 137107496 -6678959 + L1MB3 LINE L1 5787 6180 -3 1278 197 137 0 chr12 137107627 137107876 -6678579 - AluJb SINE Alu -27 285 3 392 275 81 41 chr12 137107924 137108382 -6678073 + L1MEd LINE L1 1058 1582 -4728 392 349 26 50 chr12 137108386 137108764 -6677691 + L2 LINE L2 2903 3271 -1 326 340 49 12 chr12 137109810 137109972 -6676483 + MIR SINE MIR 21 188 -74 238 200 17 0 chr12 137111689 137111749 -6674706 + Charlie8 DNA MER1_type 117 177 -2240 336 320 27 60 chr12 137111763 137111853 -6674602 - L2 LINE L2 -248 3065 2980 700 265 71 9 chr12 137111853 137112064 -6674391 - MER58A DNA MER1_type 0 224 1 336 320 27 60 chr12 137112064 137112123 -6674332 - L2 LINE L2 -333 2980 2921 534 264 94 12 chr12 137112808 137113062 -6673393 - MER113 DNA MER1_type? -63 458 184 442 310 53 11 chr12 137113061 137113248 -6673207 + LTR33 LTR ERVL 18 212 -309 * 1625 195 7 7 chr12 137113536 137113828 -6672627 - AluJb SINE Alu -20 292 1 213 308 19 84 chr12 137113970 137114077 -6672378 - MIR SINE MIR -82 126 27 494 196 119 42 chr12 137114670 137114838 -6671617 + Charlie8 DNA MER1_type 64 244 -2173 1340 204 11 4 chr12 137115427 137115739 -6670716 - AluSx SINE Alu 0 316 3 406 177 69 123 chr12 137115764 137115850 -6670605 + MER2 DNA MER2_type 2 91 -254 1822 145 10 3 chr12 137115850 137116140 -6670315 + AluSx SINE Alu 1 292 -20 520 30 0 0 chr12 137116140 137116207 -6670248 + L1PA4 LINE L1 6086 6152 -3 406 177 69 123 chr12 137116207 137116249 -6670206 + MER2 DNA MER2_type 89 124 -221 1203 181 3 99 chr12 137116258 137116562 -6669893 - AluJo SINE Alu -14 298 24 2352 93 0 3 chr12 137116615 137116916 -6669539 - AluSc SINE Alu -9 300 1 2337 102 0 0 chr12 137118183 137118486 -6667969 + AluSx SINE Alu 1 303 -9 540 294 147 5 chr12 137118772 137118962 -6667493 + MIR SINE MIR 17 241 -21 2437 87 0 3 chr12 137118962 137119273 -6667182 + AluY SINE Alu 1 310 -1 540 294 147 5 chr12 137119273 137119293 -6667162 + MIR SINE MIR 241 257 -5 296 254 97 18 chr12 137119356 137119470 -6666985 + MIR SINE MIR 110 232 -30 * 606 330 75 4 chr12 137119463 137119702 -6666753 + MIR SINE MIR 7 262 0 197 326 157 7 chr12 137120143 137120290 -6666165 + MIR SINE MIR 50 218 -44 2350 109 0 3 chr12 137120433 137120745 -6665710 + AluSx SINE Alu 1 311 -1 426 316 82 15 chr12 137120808 137121014 -6665441 - MIR SINE MIR -11 251 32 299 222 37 37 chr12 137121774 137121882 -6664573 - MLT1J2 LTR MaLR -319 131 24 1376 22 174 0 chr12 137123430 137123614 -6662841 - L1PA5 LINE L1 -7 6147 5932 21 0 0 0 chr12 137124719 137124740 -6661715 + AT_rich Low_complexity Low_complexity 1 21 0 334 299 37 131 chr12 137125466 137126166 -6660289 + L2 LINE L2 2173 2806 -508 185 191 149 0 chr12 137126262 137126309 -6660146 - MER5B DNA MER1_type -123 55 2 1701 191 45 11 chr12 137126311 137126687 -6659768 - L1MD1 LINE L1 -255 5987 5599 504 68 0 0 chr12 137128540 137128613 -6657842 + (GA)n Simple_repeat Simple_repeat 1 73 0 1743 123 0 4 chr12 137129363 137129599 -6656856 + AluSx SINE Alu 1 235 -77 861 209 71 21 chr12 137129599 137129838 -6656617 + L1MD1 LINE L1 5737 5987 -255 377 111 0 111 chr12 137129997 137130069 -6656386 + AluSx SINE Alu 228 291 -11 26 50 0 0 chr12 137131260 137131300 -6655155 + AT_rich Low_complexity Low_complexity 1 40 0 329 331 0 76 chr12 137132513 137132562 -6653893 + MER5B DNA MER1_type 1 52 -126 922 89 17 17 chr12 137132562 137132742 -6653713 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 329 331 0 76 chr12 137132742 137132864 -6653591 + MER5B DNA MER1_type 52 159 -19 493 133 9 38 chr12 137132865 137132970 -6653485 - MER69 DNA AcHobo 0 2526 2425 993 227 107 86 chr12 137132991 137133467 -6652988 - LTR10B LTR ERV1 -3 544 17 5500 241 30 10 chr12 137133491 137135101 -6651354 - LTR10B-int LTR ERV1 0 7783 4998 1494 233 134 11 chr12 137135190 137135636 -6650819 - HERVI LTR ERV1 -3737 3159 2659 344 196 11 76 chr12 137135657 137135749 -6650706 - HERVI LTR ERV1 -2369 5416 5331 1255 248 127 15 chr12 137135842 137136369 -6650086 - HERVI LTR ERV1 -3147 4638 1219 2372 204 37 78 chr12 137136983 137138082 -6648373 - HERVI LTR ERV1 -6786 999 1 843 246 68 23 chr12 137138101 137138369 -6648086 - LTR10B LTR ERV1 -3 591 310 332 214 136 50 chr12 137138432 137138572 -6647883 - LTR10B LTR ERV1 -383 164 13 680 195 26 39 chr12 137138589 137138820 -6647635 - MER69 DNA AcHobo -95 2431 2204 757 275 25 12 chr12 137138916 137139156 -6647299 - MER69 DNA AcHobo -483 743 501 1158 245 66 6 chr12 137139189 137139524 -6646931 - MER69 DNA AcHobo -2170 356 2 510 303 15 0 chr12 137139833 137139965 -6646490 + MIR SINE MIR 24 157 -105 1887 64 3 57 chr12 137139975 137140257 -6646198 - MER4E LTR ERV1 0 766 500 * 2186 70 10 0 chr12 137140253 137140555 -6645900 - MER4E LTR ERV1 -474 305 1 290 289 0 0 chr12 137140557 137140647 -6645808 + MIR SINE MIR 163 252 -10 939 255 109 32 chr12 137141398 137141830 -6644625 - L1ME LINE L1 -448 6513 6049 573 238 14 0 chr12 137141996 137142143 -6644312 - L1ME LINE L1 -1054 5887 5739 3265 143 41 14 chr12 137142162 137142793 -6643662 - Tigger3b DNA MER2_type -2 1230 583 844 102 8 24 chr12 137142805 137142932 -6643523 - AluJo SINE Alu -178 134 10 2929 160 27 7 chr12 137142941 137143502 -6642953 - Tigger3b DNA MER2_type -659 572 1 2908 272 56 28 chr12 137143513 137145128 -6641327 - L1ME LINE L1 -1219 5722 4063 713 270 87 85 chr12 137145211 137145687 -6640768 - L1ME LINE L1 -5764 659 180 711 250 35 5 chr12 137145687 137145887 -6640568 - MER63A DNA MER1_type -4 206 1 713 270 87 85 chr12 137145887 137146032 -6640423 - L1ME LINE L1 -6243 180 37 21 0 0 0 chr12 137146155 137146176 -6640279 + AT_rich Low_complexity Low_complexity 1 21 0 205 186 0 0 chr12 137146818 137146861 -6639594 + A-rich Low_complexity Low_complexity 1 43 0 2714 190 34 25 chr12 137146864 137147274 -6639181 + L1MB2 LINE L1 5479 5899 -272 2253 108 0 3 chr12 137147274 137147569 -6638886 + AluSg SINE Alu 1 294 -16 2714 190 34 25 chr12 137147569 137147806 -6638649 + L1MB2 LINE L1 5899 6132 -39 1545 194 12 3 chr12 137147806 137148127 -6638328 + L1MA6 LINE L1 5973 6300 0 1727 244 49 45 chr12 137148473 137149080 -6637375 - MLT1E2 LTR MaLR 0 626 17 445 310 79 49 chr12 137149136 137149465 -6636990 - L1ME4a LINE L1 -166 5955 5617 1538 123 123 0 chr12 137149674 137149927 -6636528 - AluSg SINE Alu -26 284 1 354 253 40 47 chr12 137150237 137150387 -6636068 - MIR SINE MIR -11 251 103 351 282 80 39 chr12 137151832 137152268 -6634187 + LTR33 LTR ERVL 23 505 -16 25 0 0 0 chr12 137152570 137152595 -6633860 + AT_rich Low_complexity Low_complexity 1 25 0 1961 137 7 10 chr12 137152883 137153175 -6633280 - AluSg SINE Alu -19 291 1 299 321 83 14 chr12 137153390 137153667 -6632788 - L1ME LINE L1 -439 5682 5387 2359 92 0 0 chr12 137153874 137154178 -6632277 - AluSc SINE Alu -5 304 1 429 279 113 26 chr12 137154389 137154807 -6631648 + L2 LINE L2 2729 3190 -123 893 203 21 27 chr12 137156302 137156489 -6629966 - MER5A DNA MER1_type 0 189 4 383 245 7 0 chr12 137156994 137157141 -6629314 + (CA)n Simple_repeat Simple_repeat 1 148 0 413 262 223 22 chr12 137157517 137157746 -6628709 + LTR50 LTR ERVL 16 290 -505 1193 219 3 28 chr12 137157771 137158054 -6628401 - L1MA10 LINE L1 -9 6325 6050 245 146 49 0 chr12 137158050 137158091 -6628364 + L1M2 LINE L1 5708 5750 -547 * 340 257 70 42 chr12 137158118 137158295 -6628160 + LTR50 LTR ERVL 343 604 -191 1115 181 79 4 chr12 137158295 137158522 -6627933 - MSTA LTR MaLR 0 428 185 10729 65 8 4 chr12 137158550 137160656 -6625799 - L1PA6 LINE L1 -3 6151 4040 13452 138 3 16 chr12 137160656 137162778 -6623677 - L1PA6 LINE L1 -3899 2247 155 1108 163 53 0 chr12 137162778 137162968 -6623487 - MSTA LTR MaLR -228 200 1 855 315 52 54 chr12 137163448 137163862 -6622593 + MLT1K LTR MaLR 41 455 -133 2705 108 14 6 chr12 137163862 137164223 -6622232 - THE1B LTR MaLR 0 364 1 855 315 52 54 chr12 137164223 137164347 -6622108 + MLT1K LTR MaLR 455 578 -10 550 292 13 56 chr12 137164707 137164940 -6621515 - MIR SINE MIR 0 262 40 1556 202 104 52 chr12 137164940 137165420 -6621035 + MLT1D LTR MaLR 1 505 0 3057 217 65 30 chr12 137165431 137165571 -6620884 - L1MB8 LINE L1 0 6178 6044 2370 83 3 0 chr12 137165571 137165861 -6620594 + AluSq SINE Alu 1 291 -22 3057 217 65 30 chr12 137165861 137166734 -6619721 - L1MB8 LINE L1 -134 6044 5127 423 186 11 0 chr12 137167100 137167192 -6619263 + L1MB3 LINE L1 6082 6178 -2 1460 140 3 125 chr12 137167535 137167822 -6618633 - MER50 LTR ERV1 0 734 490 2277 93 3 0 chr12 137167822 137168112 -6618343 - AluSc SINE Alu -18 291 1 1460 140 3 125 chr12 137168112 137168152 -6618303 - MER50 LTR ERV1 -244 490 447 1136 158 27 27 chr12 137168139 137168360 -6618095 - MER50 LTR ERV1 -512 222 2 * 587 304 30 34 chr12 137168529 137168766 -6617689 + MIR SINE MIR 6 241 -21 31 68 0 0 chr12 137168771 137168830 -6617625 + AT_rich Low_complexity Low_complexity 1 59 0 478 165 22 22 chr12 137168957 137169048 -6617407 - MER46A DNA MER2_type -3 233 143 989 178 40 0 chr12 137169061 137169235 -6617220 - MER46A DNA MER2_type -55 181 1 2218 82 0 0 chr12 137169287 137169744 -6616711 + AluY SINE Alu 1 457 0 655 136 8 16 chr12 137169753 137169878 -6616577 + GA-rich Low_complexity Low_complexity 4 127 0 610 298 9 48 chr12 137170100 137170328 -6616127 + MIR SINE MIR 32 250 -12 1272 222 84 103 chr12 137170717 137171289 -6615166 - MER68 LTR ERV1 -1 561 1 259 290 40 50 chr12 137171397 137171497 -6614958 - MIR3 SINE MIR -95 113 15 2206 114 0 3 chr12 137173463 137173762 -6612693 - AluSg SINE Alu -12 298 1 487 270 108 32 chr12 137175293 137175478 -6610977 - MIR SINE MIR -36 226 28 57 47 0 0 chr12 137175932 137176017 -6610438 + AT_rich Low_complexity Low_complexity 1 85 0 387 278 69 58 chr12 137176237 137176410 -6610045 - MER5B DNA MER1_type 0 178 4 1709 181 3 7 chr12 137176636 137176940 -6609515 - AluJo SINE Alu -9 303 1 1471 245 31 8 chr12 137177717 137178072 -6608383 + MLT1A1 LTR MaLR 1 363 -2 186 43 0 0 chr12 137179496 137179519 -6606936 + (GA)n Simple_repeat Simple_repeat 1 23 0 642 316 23 5 chr12 137180219 137180434 -6606021 - MER58A DNA MER1_type -2 222 4 414 275 26 36 chr12 137180747 137180940 -6605515 - LTR67 LTR ERVL 0 557 367 267 160 0 0 chr12 137181082 137181132 -6605323 - MLT2B3 LTR ERVL -13 507 458 506 250 0 6 chr12 137181132 137181312 -6605143 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 282 216 27 14 chr12 137181313 137181387 -6605068 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 2599 171 27 65 chr12 137181388 137181881 -6604574 - MLT2B3 LTR ERVL -19 532 78 2406 140 25 8 chr12 137181881 137182239 -6604216 + THE1B LTR MaLR 1 364 0 2599 171 27 65 chr12 137182239 137182314 -6604141 - MLT2B3 LTR ERVL -473 78 2 364 254 99 73 chr12 137183927 137184159 -6602296 + MLT1L LTR MaLR 129 366 -249 25 0 0 0 chr12 137184244 137184269 -6602186 + AT_rich Low_complexity Low_complexity 1 25 0 33 43 0 0 chr12 137184345 137184392 -6602063 + AT_rich Low_complexity Low_complexity 1 47 0 507 301 145 37 chr12 137185933 137186285 -6600170 + MLT1K LTR MaLR 171 560 -28 263 340 56 14 chr12 137186404 137186548 -6599907 - L2 LINE L2 -1 3271 3122 330 248 171 75 chr12 137186938 137187325 -6599130 + L1MC4 LINE L1 7614 8037 -5 256 350 0 0 chr12 137187694 137187791 -6598664 + MER5A DNA MER1_type 5 101 -88 190 213 21 0 chr12 137188112 137188206 -6598249 + (TA)n Simple_repeat Simple_repeat 2 97 0 253 281 242 16 chr12 137188750 137188878 -6597577 + MIR SINE MIR 73 229 -33 727 259 31 31 chr12 137189543 137189767 -6596688 - MER90 LTR ERV1 -3 611 388 1767 172 13 25 chr12 137189866 137190180 -6596275 - AluSx SINE Alu -2 310 1 202 309 50 22 chr12 137190777 137190916 -6595539 + MER5B DNA MER1_type 7 149 -29 223 321 62 27 chr12 137190801 137190913 -6595542 - MER5A DNA MER1_type -30 159 44 1293 194 53 18 chr12 137190961 137191244 -6595211 + AluJb SINE Alu 1 293 -19 346 255 67 47 chr12 137191276 137191425 -6595030 + MIR SINE MIR 20 171 -91 1425 290 20 25 chr12 137191531 137192021 -6594434 - MER90 LTR ERV1 -3 611 124 10943 168 56 19 chr12 137192028 137193055 -6593400 - L1MA4A LINE L1 -7 6296 5308 249 42 42 21 chr12 137193055 137193103 -6593352 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 10943 168 56 19 chr12 137193103 137193558 -6592897 - L1MA4A LINE L1 -995 5308 4871 1812 181 0 3 chr12 137193558 137193867 -6592588 - AluSx SINE Alu -4 308 1 10943 168 56 19 chr12 137193867 137195554 -6590901 - L1MA4A LINE L1 -1432 4871 3011 244 189 75 0 chr12 137195709 137195762 -6590693 - MIR SINE MIR -38 224 168 240 35 0 0 chr12 137195794 137195823 -6590632 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 242 0 44 chr12 137195855 137195946 -6590509 - L1MC4 LINE L1 -1340 6702 6616 358 248 116 23 chr12 137196142 137196271 -6590184 - MIR SINE MIR -12 250 110 708 306 62 27 chr12 137197364 137197700 -6588755 - LTR16B LTR ERVL -2 462 115 437 279 30 105 chr12 137197851 137198337 -6588118 - ERVL LTR ERVL -83 5243 4539 1496 349 48 20 chr12 137198615 137199566 -6586889 - ERVL LTR ERVL -1094 4670 3693 1881 360 52 24 chr12 137199627 137199973 -6586482 - ERVL LTR ERVL -2196 3568 3233 315 0 0 0 chr12 137199973 137200008 -6586447 + (TG)n Simple_repeat Simple_repeat 2 36 0 1881 360 52 24 chr12 137200008 137201056 -6585399 - ERVL LTR ERVL -2531 3233 2135 338 285 0 46 chr12 137201887 137202017 -6584438 - L2 LINE L2 -25 3288 3165 225 298 24 0 chr12 137202182 137202266 -6584189 - MIR SINE MIR -174 88 3 2177 133 52 35 chr12 137202979 137203348 -6583107 - THE1C LTR MaLR 0 375 1 6124 142 173 7 chr12 137203348 137204687 -6581768 - THE1C-int LTR MaLR 0 1651 5 2104 135 51 38 chr12 137204687 137205057 -6581398 - THE1C LTR MaLR 0 375 1 208 231 0 0 chr12 137205437 137205476 -6580979 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 321 82 0 chr12 137205484 137205618 -6580837 - MIR SINE MIR -13 249 105 239 276 20 0 chr12 137206322 137206420 -6580035 + L1 LINE L1 4951 5050 -1096 2168 118 13 0 chr12 137206461 137206766 -6579689 + AluSc SINE Alu 1 309 0 2578 124 4 102 chr12 137207308 137207847 -6578608 + L1PB2 LINE L1 5660 6145 -6 230 321 24 0 chr12 137208477 137208561 -6577894 + MLT1L LTR MaLR 309 394 -221 281 315 0 11 chr12 137208788 137208877 -6577578 - L2 LINE L2 -192 3080 2993 189 233 150 0 chr12 137209126 137209186 -6577269 - MIR SINE MIR 0 262 194 209 33 33 0 chr12 137209517 137209547 -6576908 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 200 93 47 23 chr12 137209558 137209601 -6576854 + (TA)n Simple_repeat Simple_repeat 1 44 0 250 98 24 0 chr12 137209672 137209713 -6576742 - MIR SINE MIR -105 157 116 378 250 19 9 chr12 137209995 137210103 -6576352 - MIR SINE MIR -70 192 84 306 263 17 34 chr12 137210738 137210917 -6575538 + (TA)n Simple_repeat Simple_repeat 2 177 0 553 299 22 18 chr12 137211025 137211249 -6575206 - MIR SINE MIR -10 252 28 696 250 15 35 chr12 137212230 137212430 -6574025 - MLT2B2 LTR ERVL -74 441 246 8458 162 3 24 chr12 137262445 137263918 -6522537 - L1P LINE L1 -4549 1597 155 1114 163 53 0 chr12 137263918 137264108 -6522347 - MSTA LTR MaLR -228 200 1 828 317 52 54 chr12 137264588 137265002 -6521453 + MLT1K LTR MaLR 41 455 -133 2705 108 14 6 chr12 137265002 137265363 -6521092 - THE1B LTR MaLR 0 364 1 828 317 52 54 chr12 137265363 137265487 -6520968 + MLT1K LTR MaLR 455 578 -10 550 292 13 56 chr12 137265847 137266080 -6520375 - MIR SINE MIR 0 262 40 1556 202 104 52 chr12 137266080 137266560 -6519895 + MLT1D LTR MaLR 1 505 0 338 250 29 52 chr12 137266572 137266708 -6519747 - L1MB8 LINE L1 0 6178 6046 2117 107 7 7 chr12 137266712 137267003 -6519452 + AluSc SINE Alu 1 291 -18 1872 173 51 16 chr12 137267388 137267763 -6518692 + MER61D LTR ERV1 114 501 0 216 0 0 0 chr12 137267811 137267835 -6518620 + (CA)n Simple_repeat Simple_repeat 1 24 0 419 327 110 12 chr12 137267839 137268093 -6518362 - L1ME3 LINE L1 -216 5946 5668 233 153 0 51 chr12 137268164 137268223 -6518232 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 509 323 33 36 chr12 137268243 137268636 -6517819 - L1ME3 LINE L1 -514 5648 5257 377 321 72 34 chr12 137268782 137268991 -6517464 - MIR SINE MIR -28 234 18 234 0 0 0 chr12 137269097 137269123 -6517332 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 185 324 127 0 chr12 137269152 137269223 -6517232 - L2 LINE L2 -5 3267 3188 1853 285 42 22 chr12 137269292 137270149 -6516306 + L1M4 LINE L1 3073 3946 -2200 2209 231 57 9 chr12 137270474 137271208 -6515247 - L1MB8 LINE L1 -286 5898 5127 423 186 11 0 chr12 137271574 137271666 -6514789 + L1MB3 LINE L1 6082 6178 -2 1447 143 3 125 chr12 137272009 137272296 -6514159 - MER50 LTR ERV1 0 734 490 2215 99 3 7 chr12 137272296 137272589 -6513866 - AluSc SINE Alu -17 292 1 1447 143 3 125 chr12 137272589 137272629 -6513826 - MER50 LTR ERV1 -244 490 447 1117 163 27 27 chr12 137272616 137272837 -6513618 - MER50 LTR ERV1 -512 222 2 * 585 304 30 34 chr12 137273006 137273243 -6513212 + MIR SINE MIR 6 241 -21 394 261 76 54 chr12 137273409 137273685 -6512770 - HERVI LTR ERV1 -1380 5269 4988 1451 241 47 18 chr12 137273764 137274212 -6512243 - HERVI LTR ERV1 -1794 4855 2803 388 204 10 87 chr12 137274221 137274324 -6512131 - HERVI LTR ERV1 -2360 5425 5331 1425 248 127 15 chr12 137274417 137274944 -6511511 - HERVI LTR ERV1 -3147 4638 1219 2674 202 38 79 chr12 137275558 137276657 -6509798 - HERVI LTR ERV1 -6786 999 1 931 249 130 94 chr12 137276676 137277146 -6509309 - LTR10B LTR ERV1 -3 544 16 765 206 61 36 chr12 137277164 137277441 -6509014 - MER69 DNA AcHobo -95 2431 2148 886 271 25 12 chr12 137277491 137277731 -6508724 - MER69 DNA AcHobo -483 743 501 1311 239 66 6 chr12 137277764 137278099 -6508356 - MER69 DNA AcHobo -2170 356 2 1343 239 68 87 chr12 137278983 137279555 -6506900 - MER68 LTR ERV1 -1 561 1 257 290 40 50 chr12 137279663 137279763 -6506692 - MIR3 SINE MIR -95 113 15 2249 109 0 3 chr12 137281728 137282030 -6504425 - AluSg SINE Alu -9 301 1 235 283 33 0 chr12 137282549 137282641 -6503814 - MLT1E2 LTR MaLR -515 111 17 408 313 79 49 chr12 137282697 137283026 -6503429 - L1ME4a LINE L1 -166 5955 5617 1581 119 123 0 chr12 137283235 137283488 -6502967 - AluSg SINE Alu -26 284 1 345 221 46 53 chr12 137283798 137283929 -6502526 - MIR SINE MIR -11 251 122 1362 150 9 17 chr12 137285149 137285382 -6501073 - AluSg SINE Alu -79 231 1 422 314 92 14 chr12 137285588 137285871 -6500584 - L1ME LINE L1 -430 5691 5387 2333 99 0 0 chr12 137286078 137286382 -6500073 - AluSc SINE Alu -5 304 1 403 285 113 26 chr12 137286594 137287012 -6499443 + L2 LINE L2 2729 3190 -123 893 203 21 27 chr12 137288509 137288696 -6497759 - MER5A DNA MER1_type 0 189 4 383 245 7 0 chr12 137289201 137289348 -6497107 + (CA)n Simple_repeat Simple_repeat 1 148 0 456 253 223 22 chr12 137289724 137289953 -6496502 + LTR50 LTR ERVL 16 290 -505 1195 225 0 28 chr12 137289978 137290262 -6496193 - L1MA10 LINE L1 -9 6325 6050 245 146 49 0 chr12 137290258 137290299 -6496156 + L1M2 LINE L1 5708 5750 -547 * 321 254 70 42 chr12 137290326 137290503 -6495952 + LTR50 LTR ERVL 343 604 -191 1113 184 81 0 chr12 137290503 137290726 -6495729 - MSTA LTR MaLR 0 428 188 198 0 0 0 chr12 137291304 137291326 -6495129 + (A)n Simple_repeat Simple_repeat 1 22 0 1819 205 51 2 chr12 137291354 137291764 -6494691 + L1MB2 LINE L1 5479 5908 -263 2092 124 20 0 chr12 137291764 137292063 -6494392 + AluSg SINE Alu 1 305 -5 1718 142 15 0 chr12 137292306 137292567 -6493888 + AluSx SINE Alu 48 312 0 298 241 139 37 chr12 137293326 137293434 -6493021 + MLT1L LTR MaLR 172 290 -325 2300 290 33 24 chr12 137293672 137294723 -6491732 - L1M4 LINE L1 -1824 4322 3262 944 280 78 78 chr12 137294797 137295277 -6491178 - L1MCc LINE L1 -5761 662 180 795 250 35 5 chr12 137295277 137295477 -6490978 - MER63A DNA MER1_type -4 206 1 944 280 78 78 chr12 137295477 137295622 -6490833 - L1MCc LINE L1 -6242 181 37 21 0 0 0 chr12 137295745 137295766 -6490689 + AT_rich Low_complexity Low_complexity 1 21 0 240 305 113 6 chr12 137296043 137296225 -6490230 - MIR SINE MIR -31 231 31 489 233 68 14 chr12 137296489 137296635 -6489820 + MER104 DNA Tc2 27 180 0 423 270 20 0 chr12 137296640 137296740 -6489715 + MER91B DNA MER1_type 86 187 -3 1823 118 18 11 chr12 137296868 137297180 -6489275 + AluSx SINE Alu 3 316 0 187 323 224 22 chr12 137298239 137298462 -6487993 - L2 LINE L2 -192 3080 2813 205 233 150 0 chr12 137298577 137298637 -6487818 - MIR SINE MIR 0 262 194 264 98 24 0 chr12 137299113 137299154 -6487301 - MIR SINE MIR -105 157 116 366 239 15 46 chr12 137299436 137299566 -6486889 - MIR SINE MIR -70 192 67 230 273 0 0 chr12 137300524 137300590 -6485865 - MLT1I LTR MaLR 0 409 344 333 306 18 82 chr12 137301142 137301191 -6485264 + MER5B DNA MER1_type 1 52 -126 889 86 17 17 chr12 137301191 137301365 -6485090 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 333 306 18 82 chr12 137301365 137301485 -6484970 + MER5B DNA MER1_type 52 159 -19 549 138 9 52 chr12 137301486 137301602 -6484853 - MER69 DNA AcHobo 0 2526 2416 1034 253 51 24 chr12 137301612 137301905 -6484550 - LTR10B LTR ERV1 -3 544 244 487 270 108 32 chr12 137302780 137302965 -6483490 - MIR SINE MIR -36 226 28 2173 106 82 3 chr12 137303432 137303800 -6482655 - Tigger3b DNA MER2_type -274 958 562 841 102 8 24 chr12 137303800 137303927 -6482528 - AluJo SINE Alu -178 134 10 3195 166 25 7 chr12 137303936 137304498 -6481957 - Tigger3b DNA MER2_type -659 572 1 406 170 60 3 chr12 137304663 137304766 -6481689 - LTR10B LTR ERV1 -371 134 13 4855 238 30 10 chr12 137304792 137305895 -6480560 - HERVI LTR ERV1 -2 7783 6659 56 48 0 0 chr12 137307371 137307455 -6479000 + AT_rich Low_complexity Low_complexity 1 84 0 270 266 118 83 chr12 137307683 137307852 -6478603 - MER5B DNA MER1_type 0 178 4 1754 177 3 7 chr12 137308076 137308381 -6478074 - AluJo SINE Alu -8 304 1 1491 242 31 8 chr12 137309158 137309513 -6476942 + MLT1A1 LTR MaLR 1 363 -2 186 43 0 0 chr12 137310937 137310960 -6475495 + (GA)n Simple_repeat Simple_repeat 1 23 0 642 316 23 5 chr12 137311660 137311875 -6474580 - MER58A DNA MER1_type -2 222 4 414 275 26 36 chr12 137312188 137312381 -6474074 - LTR67 LTR ERVL 0 557 367 267 160 0 0 chr12 137312523 137312573 -6473882 - MLT2B3 LTR ERVL -13 507 458 506 250 0 6 chr12 137312573 137312753 -6473702 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 282 216 27 14 chr12 137312754 137312828 -6473627 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 2599 171 27 65 chr12 137312829 137313322 -6473133 - MLT2B3 LTR ERVL -19 532 78 2406 140 25 8 chr12 137313322 137313680 -6472775 + THE1B LTR MaLR 1 364 0 2599 171 27 65 chr12 137313680 137313755 -6472700 - MLT2B3 LTR ERVL -473 78 2 364 254 99 73 chr12 137315368 137315600 -6470855 + MLT1L LTR MaLR 129 366 -249 25 0 0 0 chr12 137315685 137315710 -6470745 + AT_rich Low_complexity Low_complexity 1 25 0 33 43 0 0 chr12 137315786 137315833 -6470622 + AT_rich Low_complexity Low_complexity 1 47 0 507 301 145 37 chr12 137317374 137317726 -6468729 + MLT1K LTR MaLR 171 560 -28 263 340 56 14 chr12 137317845 137317989 -6468466 - L2 LINE L2 -1 3271 3122 330 248 171 75 chr12 137318378 137318765 -6467690 + L1MC4 LINE L1 7614 8037 -5 256 350 0 0 chr12 137319134 137319231 -6467224 + MER5A DNA MER1_type 5 101 -88 190 213 21 0 chr12 137319552 137319646 -6466809 + (TA)n Simple_repeat Simple_repeat 2 97 0 253 281 242 16 chr12 137320190 137320318 -6466137 + MIR SINE MIR 73 229 -33 727 259 31 31 chr12 137320983 137321207 -6465248 - MER90 LTR ERV1 -3 611 388 1767 172 13 25 chr12 137321306 137321620 -6464835 - AluSx SINE Alu -2 310 1 202 309 50 22 chr12 137322217 137322356 -6464099 + MER5B DNA MER1_type 7 149 -29 223 321 62 27 chr12 137322241 137322353 -6464102 - MER5A DNA MER1_type -30 159 44 1293 194 53 18 chr12 137322401 137322684 -6463771 + AluJb SINE Alu 1 293 -19 346 255 67 47 chr12 137322716 137322865 -6463590 + MIR SINE MIR 20 171 -91 1425 290 20 25 chr12 137322971 137323461 -6462994 - MER90 LTR ERV1 -3 611 124 10943 168 56 19 chr12 137323468 137324496 -6461959 - L1MA4A LINE L1 -7 6296 5307 249 42 42 21 chr12 137324496 137324544 -6461911 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 10943 168 56 19 chr12 137324544 137324999 -6461456 - L1MA4A LINE L1 -996 5307 4870 1812 181 0 3 chr12 137324999 137325308 -6461147 - AluSx SINE Alu -4 308 1 10943 168 56 19 chr12 137325308 137326995 -6459460 - L1MA4A LINE L1 -1433 4870 3011 244 189 75 0 chr12 137327150 137327203 -6459252 - MIR SINE MIR -38 224 168 240 35 0 0 chr12 137327235 137327264 -6459191 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 242 0 44 chr12 137327296 137327387 -6459068 - L1MC4 LINE L1 -1340 6702 6616 358 248 116 23 chr12 137327583 137327712 -6458743 - MIR SINE MIR -12 250 110 708 306 62 27 chr12 137328804 137329140 -6457315 - LTR16B LTR ERVL -2 462 115 437 279 30 105 chr12 137329291 137329777 -6456678 - ERVL LTR ERVL -83 5243 4539 1496 349 48 20 chr12 137330055 137331006 -6455449 - ERVL LTR ERVL -1094 4670 3693 1881 360 52 24 chr12 137331067 137331413 -6455042 - ERVL LTR ERVL -2196 3568 3233 315 0 0 0 chr12 137331413 137331448 -6455007 + (TG)n Simple_repeat Simple_repeat 2 36 0 1881 360 52 24 chr12 137331448 137332496 -6453959 - ERVL LTR ERVL -2531 3233 2135 338 285 0 46 chr12 137333327 137333457 -6452998 - L2 LINE L2 -25 3288 3165 225 298 24 0 chr12 137333622 137333706 -6452749 - MIR SINE MIR -174 88 3 2177 133 52 35 chr12 137334419 137334788 -6451667 - THE1C LTR MaLR 0 375 1 6112 143 173 7 chr12 137334788 137336127 -6450328 - THE1C-int LTR MaLR 0 1651 5 2104 135 51 38 chr12 137336127 137336497 -6449958 - THE1C LTR MaLR 0 375 1 208 231 0 0 chr12 137336879 137336918 -6449537 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 321 82 0 chr12 137336926 137337060 -6449395 - MIR SINE MIR -13 249 105 253 276 20 0 chr12 137337764 137337862 -6448593 + L1 LINE L1 4951 5050 -1096 2154 118 13 0 chr12 137337903 137338208 -6448247 + AluSc SINE Alu 1 309 0 2740 124 4 102 chr12 137338750 137339289 -6447166 + L1PB2 LINE L1 5660 6145 -6 228 321 24 0 chr12 137339919 137340003 -6446452 + MLT1L LTR MaLR 309 394 -221 202 297 68 0 chr12 137340225 137340299 -6446156 - L2 LINE L2 -221 3092 3014 205 233 150 0 chr12 137340568 137340628 -6445827 - MIR SINE MIR 0 262 194 209 33 33 0 chr12 137340959 137340989 -6445466 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 200 93 47 23 chr12 137341000 137341043 -6445412 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 98 24 0 chr12 137341114 137341155 -6445300 - MIR SINE MIR -105 157 116 397 240 16 39 chr12 137341437 137341566 -6444889 - MIR SINE MIR -70 192 67 306 263 17 34 chr12 137342180 137342359 -6444096 + (TA)n Simple_repeat Simple_repeat 2 177 0 608 306 21 17 chr12 137342467 137342702 -6443753 - MIR SINE MIR -10 252 17 1517 241 66 26 chr12 137343672 137344096 -6442359 - MLT2B2 LTR ERVL -74 441 1 2922 30 12 3 chr12 137344328 137344659 -6441796 - L1PA4 LINE L1 -13 6142 5809 5112 32 3 2 chr12 137344659 137345649 -6440806 + L1P2 LINE L1 4784 5775 -380 365 268 0 63 chr12 137347024 137347151 -6439304 + MLT1K LTR MaLR 455 573 -15 300 351 136 4 chr12 137347182 137347433 -6439022 + LTR33 LTR ERVL 2 285 -236 270 337 52 29 chr12 137347452 137347624 -6438831 - MIR SINE MIR 0 262 87 258 251 67 4 chr12 137348277 137348405 -6438050 + MLT1I LTR MaLR 80 204 -205 1956 190 7 61 chr12 137348606 137349016 -6437439 + MLT1B LTR MaLR 3 390 0 607 271 116 82 chr12 137349035 137349537 -6436918 + MLT1K LTR MaLR 70 588 0 334 267 86 9 chr12 137349587 137349692 -6436763 - MIR SINE MIR -48 214 102 558 247 54 32 chr12 137350100 137350286 -6436169 - MIR SINE MIR -8 254 65 2073 97 0 4 chr12 137351087 137351356 -6435099 - AluSp SINE Alu -22 291 24 1059 138 0 0 chr12 137351356 137351573 -6434882 + (TA)n Simple_repeat Simple_repeat 1 217 0 2736 121 3 3 chr12 137352081 137352445 -6434010 + THE1B LTR MaLR 1 364 0 195 349 72 0 chr12 137352765 137352848 -6433607 + L2 LINE L2 3174 3262 -10 216 0 0 0 chr12 137354151 137354175 -6432280 + (TA)n Simple_repeat Simple_repeat 1 24 0 351 65 0 0 chr12 137354185 137354231 -6432224 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 207 392 18 29 chr12 137354617 137354788 -6431667 - L2 LINE L2 -451 2863 2695 2223 125 0 3 chr12 137356375 137356688 -6429767 - AluSx SINE Alu 0 312 1 890 246 235 11 chr12 137357657 137358120 -6428335 - LTR50 LTR ERVL -228 567 1 208 283 97 9 chr12 137358302 137358415 -6428040 - MIR SINE MIR -93 169 47 477 233 68 14 chr12 137358697 137358843 -6427612 + MER104 DNA Tc2 27 180 0 391 270 20 0 chr12 137358848 137358948 -6427507 + MER91B DNA MER1_type 86 187 -3 2198 99 7 0 chr12 137359070 137359384 -6427071 + AluSx SINE Alu 1 316 0 1458 210 135 37 chr12 137359807 137360317 -6426138 - MER68 LTR ERV1 0 562 3 2061 145 6 25 chr12 137360528 137360845 -6425610 - AluSx SINE Alu -1 311 1 1470 164 31 39 chr12 137361584 137361870 -6424585 - L1PA11 LINE L1 0 6174 5891 1781 127 23 0 chr12 137364019 137364279 -6422176 + AluSx SINE Alu 42 307 -5 1719 142 15 0 chr12 137364522 137364783 -6421672 + AluSx SINE Alu 48 312 0 397 297 168 46 chr12 137365541 137365844 -6420611 + MLT1L LTR MaLR 172 511 -104 2032 124 13 10 chr12 137365852 137366159 -6420296 - AluSx SINE Alu -4 308 1 1174 74 0 0 chr12 137366159 137366294 -6420161 - AluSq/x SINE Alu -178 135 1 350 300 36 58 chr12 137366654 137366877 -6419578 + MIR SINE MIR 28 245 -17 2961 16 0 0 chr12 137366914 137367232 -6419223 - AluYb8 SINE Alu 0 318 1 204 40 0 0 chr12 137367328 137367353 -6419102 + (GGGGA)n Simple_repeat Simple_repeat 4 28 0 381 22 0 0 chr12 137368149 137368195 -6418260 + (TG)n Simple_repeat Simple_repeat 1 46 0 2217 107 7 3 chr12 137368867 137369166 -6417289 - AluSq SINE Alu -13 300 1 2241 125 92 25 chr12 137369230 137369631 -6416824 - MSTA LTR MaLR 0 428 1 963 128 6 11 chr12 137369935 137370115 -6416340 + (ATG)n Simple_repeat Simple_repeat 2 180 0 472 311 18 0 chr12 137370146 137370310 -6416145 - MIR SINE MIR -1 261 95 22 35 0 0 chr12 137370885 137370914 -6415541 + AT_rich Low_complexity Low_complexity 1 29 0 1257 292 79 34 chr12 137371193 137371776 -6414679 + MLT2E LTR ERVL 20 628 0 349 219 43 134 chr12 137372538 137372638 -6413817 + MIR SINE MIR 92 169 -93 2168 141 0 0 chr12 137372638 137372943 -6413512 + AluSx SINE Alu 1 305 -7 349 219 43 134 chr12 137372943 137373029 -6413426 + MIR SINE MIR 169 261 -1 1571 148 33 23 chr12 137373619 137373923 -6412532 + L1MA9 LINE L1 6006 6312 0 757 206 29 59 chr12 137373929 137374166 -6412289 + AluJo SINE Alu 85 315 0 529 246 5 138 chr12 137374184 137374265 -6412190 + MIR SINE MIR 32 122 -140 2396 67 0 17 chr12 137374265 137374565 -6411890 - AluY SINE Alu -12 299 5 529 246 5 138 chr12 137374565 137374707 -6411748 + MIR SINE MIR 122 225 -37 306 0 0 0 chr12 137374965 137374998 -6411457 + U2 snRNA snRNA 1 33 -155 216 67 0 0 chr12 137375186 137375216 -6411239 + (TG)n Simple_repeat Simple_repeat 2 31 0 1464 281 61 13 chr12 137375420 137375897 -6410558 - MER41E LTR ERV1 0 512 13 2188 145 28 0 chr12 137376061 137376413 -6410042 + THE1B LTR MaLR 3 364 0 843 29 39 0 chr12 137376694 137376798 -6409657 + L1PA4 LINE L1 6043 6150 -5 360 240 78 49 chr12 137379869 137380073 -6406382 - L2 LINE L2 -195 3118 2909 456 206 51 81 chr12 137380075 137380357 -6406098 - L2 LINE L2 -249 3064 2790 1056 255 52 87 chr12 137380379 137380516 -6405939 + MLT1J LTR MaLR 24 164 -347 2447 76 3 0 chr12 137380516 137380820 -6405635 - AluY SINE Alu -6 305 1 1056 255 52 87 chr12 137380820 137381140 -6405315 + MLT1J LTR MaLR 164 464 -47 195 42 0 0 chr12 137381140 137381164 -6405291 + (TA)n Simple_repeat Simple_repeat 2 25 0 1056 255 52 87 chr12 137381164 137381210 -6405245 + MLT1J LTR MaLR 464 510 -1 579 300 32 23 chr12 137381246 137381466 -6404989 - L2 LINE L2 -558 2756 2535 238 222 0 0 chr12 137381516 137381570 -6404885 + L1MC4 LINE L1 6648 6701 -1341 455 338 50 5 chr12 137382733 137382931 -6403524 + MIR SINE MIR 7 213 -49 297 0 0 0 chr12 137383376 137383409 -6403046 + (TG)n Simple_repeat Simple_repeat 2 34 0 225 139 0 0 chr12 137383981 137384024 -6402431 + (CA)n Simple_repeat Simple_repeat 1 43 0 1185 233 49 6 chr12 137384080 137384573 -6401882 + MER82 DNA MER2_type 52 652 -1 198 103 0 0 chr12 137384574 137384603 -6401852 + (TG)n Simple_repeat Simple_repeat 2 30 0 2190 249 33 11 chr12 137385626 137386176 -6400279 - MER68 LTR ERV1 0 562 1 197 340 66 0 chr12 137386699 137386805 -6399650 + L2 LINE L2 1862 1974 -1340 250 178 169 76 chr12 137386843 137386961 -6399494 - Charlie1b DNA MER1_type -5 518 390 684 293 11 5 chr12 137386975 137387163 -6399292 - Charlie1b DNA MER1_type -334 189 1 439 307 78 8 chr12 137387191 137387238 -6399217 + L2 LINE L2 2026 2068 -1246 2351 141 98 2 chr12 137387238 137387658 -6398797 - LTR46 LTR ERV1 0 460 1 439 307 78 8 chr12 137387658 137387854 -6398601 + L2 LINE L2 2068 2286 -1028 603 295 50 61 chr12 137388277 137388619 -6397836 - MLT1K LTR MaLR -237 351 14 718 97 53 0 chr12 137389032 137389145 -6397310 - AluSp/q SINE Alu -5 308 190 327 237 108 0 chr12 137389462 137389555 -6396900 + MIR SINE MIR 22 124 -138 967 231 151 9 chr12 137390073 137390397 -6396058 - MLT1A2 LTR MaLR -4 370 1 312 274 71 0 chr12 137390582 137390695 -6395760 - MLT1K LTR MaLR -124 464 344 * 451 222 117 97 chr12 137390684 137390932 -6395523 - MER102a DNA MER1_type -24 306 54 576 337 78 45 chr12 137391320 137391792 -6394663 + MLT1K LTR MaLR 3 490 -98 1062 211 88 125 chr12 137392530 137393018 -6393437 - LTR33A LTR ERVL -14 509 40 478 254 32 45 chr12 137395336 137395556 -6390899 - L1ME4a LINE L1 -268 5853 5637 374 350 50 5 chr12 137395681 137395881 -6390574 - MIR SINE MIR -34 228 20 417 158 0 12 chr12 137396808 137396890 -6389565 - L1MD3 LINE L1 -1 7994 7914 698 298 41 33 chr12 137397548 137397911 -6388544 + MER113 DNA MER1_type? 37 402 -119 274 321 37 0 chr12 137398135 137398244 -6388211 - MIR3 SINE MIR -6 202 90 2382 81 3 0 chr12 137398431 137398729 -6387726 + AluSp SINE Alu 1 299 -14 322 250 27 18 chr12 137400538 137400644 -6385811 - MLT1K LTR MaLR 0 588 482 496 195 0 62 chr12 137400644 137400757 -6385698 - ORSL DNA AcHobo 0 275 170 194 376 112 10 chr12 137400956 137401153 -6385302 + L2 LINE L2 2836 3052 -261 2256 105 3 16 chr12 137401174 137401487 -6384968 + AluSx SINE Alu 1 309 -3 266 277 87 56 chr12 137401642 137401837 -6384618 - MLT1K LTR MaLR -341 247 47 3225 97 24 0 chr12 137402034 137402490 -6383965 - L1PA11 LINE L1 0 6174 5708 2268 94 0 10 chr12 137403217 137403514 -6382941 - AluSq SINE Alu -19 294 1 269 243 0 27 chr12 137403549 137403623 -6382832 + MER116 DNA Mariner 9 80 0 1701 169 3 13 chr12 137404537 137404839 -6381616 - AluJo SINE Alu -2 310 12 696 267 130 60 chr12 137405387 137405817 -6380638 + MLT1H LTR MaLR 87 546 -3 219 36 0 0 chr12 137405817 137405845 -6380610 + (CA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr12 137406005 137406025 -6380430 + (T)n Simple_repeat Simple_repeat 1 20 0 455 253 54 61 chr12 137406334 137406611 -6379844 - L1MC4a LINE L1 -1889 5919 5645 773 304 55 40 chr12 137406780 137407201 -6379254 + LTR33 LTR ERVL 1 427 -94 298 210 84 42 chr12 137407458 137407577 -6378878 - L1MC/D LINE L1 -2040 5768 5645 970 307 48 48 chr12 137407746 137408267 -6378188 + LTR33 LTR ERVL 1 521 0 1920 251 74 13 chr12 137409092 137409567 -6376888 - MLT1D LTR MaLR -1 504 1 235 163 70 0 chr12 137410001 137410044 -6376411 + Charlie7 DNA MER1_type 1110 1155 -1457 243 390 20 0 chr12 137410044 137410144 -6376311 + L2 LINE L2 3136 3237 -35 401 288 106 48 chr12 137410210 137410502 -6375953 - MER102a DNA MER1_type -21 309 1 36 23 0 0 chr12 137410979 137411022 -6375433 + AT_rich Low_complexity Low_complexity 1 43 0 228 35 0 0 chr12 137411615 137411644 -6374811 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 281 244 196 83 chr12 137411914 137412143 -6374312 + MLT1H LTR MaLR 50 304 -245 452 293 72 29 chr12 137412586 137412794 -6373661 + MIR SINE MIR 2 218 -44 184 274 20 0 chr12 137412852 137412903 -6373552 + L2 LINE L2 3221 3272 0 227 289 21 62 chr12 137413549 137413646 -6372809 + LTR67 LTR ERVL 99 191 -366 * 449 277 101 61 chr12 137413564 137413955 -6372500 + MLT1L LTR MaLR 110 591 -24 295 333 31 18 chr12 137414192 137414355 -6372100 - MIR SINE MIR -36 172 2 446 314 8 0 chr12 137414519 137414640 -6371815 - MIR SINE MIR -98 164 43 2931 184 38 40 chr12 137414647 137414915 -6371540 + LTR26 LTR ERV1 1 268 -335 2257 141 48 22 chr12 137414915 137415270 -6371185 - THE1B LTR MaLR 0 364 1 2931 184 38 40 chr12 137415270 137415605 -6370850 + LTR26 LTR ERV1 268 603 0 485 278 28 11 chr12 137415677 137415833 -6370622 - MIR SINE MIR -63 145 3 961 281 80 30 chr12 137416047 137416356 -6370099 - MLT1K LTR MaLR -43 545 210 2197 188 75 5 chr12 137416356 137416754 -6369701 + MSTB LTR MaLR 1 426 0 961 281 80 30 chr12 137416754 137416846 -6369609 - MLT1K LTR MaLR -378 210 124 1018 265 148 19 chr12 137417228 137417640 -6368815 - MER31B LTR ERV1 -1 465 1 832 146 0 36 chr12 137417744 137417881 -6368574 - FLAM_C SINE Alu -11 132 1 2158 248 42 15 chr12 137418695 137419153 -6367302 + MER87 LTR ERV1 1 476 -65 5462 164 74 35 chr12 137419153 137420134 -6366321 + LTR28 LTR ERV1 1 1020 0 2158 248 42 15 chr12 137420134 137420196 -6366259 + MER87 LTR ERV1 476 535 -6 21 57 0 0 chr12 137420279 137420314 -6366141 + AT_rich Low_complexity Low_complexity 1 35 0 2044 145 0 13 chr12 137420355 137420672 -6365783 - AluSq SINE Alu 0 313 1 2116 121 6 19 chr12 137421292 137421606 -6364849 - AluSx SINE Alu -2 310 1 367 305 85 14 chr12 137421664 137421887 -6364568 + MIR SINE MIR 6 244 -18 390 259 93 15 chr12 137421995 137422200 -6364255 - LTR37B LTR ERV1 -5 463 243 618 268 127 71 chr12 137422311 137422390 -6364065 - MLT1F1 LTR MaLR -206 361 288 207 0 0 0 chr12 137422390 137422413 -6364042 + (TTG)n Simple_repeat Simple_repeat 2 24 0 618 268 127 71 chr12 137422413 137422531 -6363924 - MLT1F1 LTR MaLR -279 288 178 2361 120 47 33 chr12 137422531 137422890 -6363565 - THE1B LTR MaLR 0 364 1 618 268 127 71 chr12 137422890 137423030 -6363425 - MLT1F1 LTR MaLR -389 178 4 448 317 54 21 chr12 137423034 137423220 -6363235 - MLT1I LTR MaLR -34 375 184 4211 234 52 26 chr12 137423226 137424488 -6361967 + L1M4 LINE L1 3831 5124 -1022 682 213 92 49 chr12 137424582 137424836 -6361619 - LTR12 LTR ERV1 -242 2196 231 2017 110 45 10 chr12 137425158 137425449 -6361006 - AluSg SINE Alu -9 301 1 381 307 44 60 chr12 137426026 137426129 -6360326 - L2 LINE L2 -831 2483 2380 312 91 0 0 chr12 137426129 137426173 -6360282 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 381 307 44 60 chr12 137426173 137426320 -6360135 - L2 LINE L2 -934 2380 2237 236 338 7 26 chr12 137427157 137427311 -6359144 + MLT1I LTR MaLR 56 206 -203 1880 123 0 11 chr12 137427588 137427856 -6358599 - AluSg SINE Alu -10 300 36 2118 107 7 7 chr12 137428031 137428322 -6358133 + AluSc SINE Alu 1 291 -18 2106 151 45 16 chr12 137428707 137429084 -6357371 + MER61D LTR ERV1 114 501 0 216 0 0 0 chr12 137429132 137429156 -6357299 + (CA)n Simple_repeat Simple_repeat 1 24 0 427 325 110 12 chr12 137429160 137429415 -6357040 - L1ME3 LINE L1 -216 5946 5667 214 169 51 0 chr12 137429485 137429544 -6356911 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 515 326 30 33 chr12 137429564 137429957 -6356498 - L1ME3 LINE L1 -514 5648 5257 377 321 72 34 chr12 137430103 137430312 -6356143 - MIR SINE MIR -28 234 18 216 0 0 0 chr12 137430418 137430442 -6356013 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 185 324 127 0 chr12 137430473 137430544 -6355911 - L2 LINE L2 -5 3267 3188 5338 259 43 37 chr12 137430613 137432819 -6353636 + L1M4 LINE L1 3073 5291 -855 402 74 0 0 chr12 137433168 137433222 -6353233 + (CA)n Simple_repeat Simple_repeat 2 55 0 180 183 33 17 chr12 137433402 137433462 -6352993 + CT-rich Low_complexity Low_complexity 3 63 0 206 274 0 20 chr12 137433737 137433788 -6352667 - MIR SINE MIR -140 68 19 531 0 0 0 chr12 137433957 137434016 -6352439 + (TC)n Simple_repeat Simple_repeat 1 59 0 1715 242 72 30 chr12 137435731 137436255 -6350200 + MER68 LTR ERV1 15 560 -2 576 257 59 83 chr12 137437344 137437493 -6348962 + MLT1C LTR MaLR 66 206 -261 2291 94 10 0 chr12 137437493 137437790 -6348665 + AluSp SINE Alu 1 300 -13 576 257 59 83 chr12 137437790 137437928 -6348527 + MLT1C LTR MaLR 206 346 -121 2189 108 3 3 chr12 137438366 137438717 -6347738 - AluSq SINE Alu 0 352 2 24 0 0 0 chr12 137438717 137438741 -6347714 + AT_rich Low_complexity Low_complexity 1 24 0 1140 140 32 38 chr12 137440644 137440830 -6345625 - AluSx SINE Alu -83 229 45 506 108 72 24 chr12 137442016 137442182 -6344273 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 239 330 0 10 chr12 137442194 137442324 -6344131 + GA-rich Low_complexity Low_complexity 1 128 0 360 255 32 11 chr12 137442325 137442419 -6344036 - MIR3 SINE MIR -46 162 67 34 55 0 14 chr12 137443109 137443142 -6343313 + AT_rich Low_complexity Low_complexity 1 33 -39 2095 133 3 3 chr12 137443142 137443451 -6343004 - AluSx SINE Alu -3 309 1 34 55 0 14 chr12 137443451 137443490 -6342965 + AT_rich Low_complexity Low_complexity 33 72 0 671 313 22 11 chr12 137443527 137443805 -6342650 + MER113 DNA MER1_type? 238 518 -3 284 299 34 8 chr12 137444040 137444157 -6342298 + L2 LINE L2 3145 3264 -8 403 285 57 0 chr12 137444315 137444438 -6342017 - MER91B DNA MER1_type -60 130 1 494 254 8 22 chr12 137445044 137445178 -6341277 - MER58B DNA MER1_type -11 330 199 1797 157 7 0 chr12 137445703 137445983 -6340472 + AluJo SINE Alu 1 282 -30 1193 309 80 24 chr12 137446234 137447181 -6339274 + L2 LINE L2 2305 3307 -6 234 311 43 61 chr12 137447518 137447722 -6338733 + L1ME LINE L1 5616 5815 -306 2262 100 0 35 chr12 137447722 137448041 -6338414 + AluSq SINE Alu 1 308 -5 234 311 43 61 chr12 137448041 137448113 -6338342 + L1ME LINE L1 5815 5887 -234 244 299 52 22 chr12 137448220 137448354 -6338101 - L1ME LINE L1 -510 5611 5474 2283 126 48 31 chr12 137449606 137449964 -6336491 + THE1B LTR MaLR 1 364 0 1495 159 21 83 chr12 137450428 137450754 -6335701 - AluJo SINE Alu -6 306 1 1181 227 49 64 chr12 137450808 137451062 -6335393 + L1MA9 LINE L1 5875 6122 -190 2085 121 3 7 chr12 137451062 137451360 -6335095 + AluSx SINE Alu 1 297 -15 1181 227 49 64 chr12 137451360 137451511 -6334944 + L1MA9 LINE L1 6122 6274 -38 536 362 49 25 chr12 137451894 137452261 -6334194 + MLT1I LTR MaLR 25 400 -9 355 296 59 38 chr12 137453327 137453513 -6332942 - MLT1K LTR MaLR -23 565 376 294 194 0 0 chr12 137454593 137454665 -6331790 + (TATG)n Simple_repeat Simple_repeat 1 72 0 34 0 0 0 chr12 137454693 137454727 -6331728 + AT_rich Low_complexity Low_complexity 1 34 0 238 296 38 18 chr12 137454946 137455129 -6331326 - L1MC/D LINE L1 -360 5761 5594 532 335 49 34 chr12 137455271 137455739 -6330716 + L2 LINE L2 2839 3313 0 1493 248 19 39 chr12 137455938 137456369 -6330086 + L1M4 LINE L1 16 437 -6105 749 210 27 21 chr12 137456394 137456580 -6329875 + L1M4 LINE L1 997 1183 -5359 * 1706 261 49 31 chr12 137456574 137457183 -6329272 + L1M4 LINE L1 4567 5186 -1458 1901 172 19 78 chr12 137457549 137457820 -6328635 - MLT1B LTR MaLR -1 389 149 1580 156 40 36 chr12 137457820 137458122 -6328333 + AluJo SINE Alu 5 307 -5 1901 172 19 78 chr12 137458122 137458263 -6328192 - MLT1B LTR MaLR -241 149 1 183 278 194 0 chr12 137458772 137458844 -6327611 - L2 LINE L2 -1 3312 3227 2307 128 0 0 chr12 137459724 137460036 -6326419 + AluSx SINE Alu 1 312 0 1159 243 80 65 chr12 137460384 137460907 -6325548 + MLT1E2 LTR MaLR 1 438 -67 1178 142 0 22 chr12 137460908 137461091 -6325364 - AluSg/x SINE Alu 0 310 132 180 0 0 0 chr12 137461094 137461114 -6325341 + (TA)n Simple_repeat Simple_repeat 2 21 0 44 20 0 0 chr12 137461338 137461389 -6325066 + AT_rich Low_complexity Low_complexity 1 51 0 387 105 0 0 chr12 137461390 137461447 -6325008 - AluJb SINE Alu -170 132 76 209 258 32 0 chr12 137462474 137462536 -6323919 + L2 LINE L2 3207 3270 -2 1195 167 135 12 chr12 137462627 137462950 -6323505 + AluSg1 SINE Alu 6 358 0 321 283 100 72 chr12 137463013 137463624 -6322831 + HAL1b LINE L1 717 1344 -4 1806 152 45 3 chr12 137463657 137463947 -6322508 + AluSx SINE Alu 2 303 -9 243 0 0 0 chr12 137463947 137463974 -6322481 + (CA)n Simple_repeat Simple_repeat 2 28 0 1915 144 16 13 chr12 137464333 137464638 -6321817 + AluSx SINE Alu 6 311 -1 236 277 60 24 chr12 137465158 137465241 -6321214 - MIR SINE MIR -134 128 43 785 239 17 0 chr12 137465255 137465431 -6321024 - MER58A DNA MER1_type 0 224 46 3140 269 65 23 chr12 137466319 137467070 -6319385 - L1PA13 LINE L1 -7 6156 5374 2191 133 0 7 chr12 137467756 137468058 -6318397 - AluSq SINE Alu -13 300 1 302 308 0 0 chr12 137468064 137468168 -6318287 + MLT1E2 LTR MaLR 402 505 0 434 289 69 88 chr12 137518848 137519166 -6267289 + MLT1J1 LTR MaLR 127 438 -8 2934 231 69 24 chr12 137519343 137520311 -6266144 - Charlie1 DNA MER1_type -9 2752 1741 2666 42 0 0 chr12 137520314 137520624 -6265831 - AluY SINE Alu -1 310 1 771 154 6 83 chr12 137520968 137521072 -6265383 - U4 snRNA snRNA -1 144 54 998 65 7 52 chr12 137521072 137521226 -6265229 + L1PA4 LINE L1 6008 6154 -1 771 154 6 83 chr12 137521226 137521277 -6265178 - U4 snRNA snRNA -91 54 1 229 322 105 65 chr12 137521625 137522197 -6264258 + L2 LINE L2 2149 2743 -571 233 301 107 19 chr12 137522295 137522398 -6264057 - MER5B DNA MER1_type -60 118 7 1154 232 24 53 chr12 137522743 137523084 -6263371 - MLT2B3 LTR ERVL 0 554 224 572 267 6 8 chr12 137523227 137523445 -6263010 + L1ME LINE L1 789 1038 -5066 318 298 239 14 chr12 137524043 137524332 -6262123 + MLT1L LTR MaLR 186 539 -76 478 290 58 40 chr12 137524365 137524589 -6261866 + L1MCc LINE L1 227 454 -5969 1751 165 78 98 chr12 137524874 137525126 -6261329 - MSTA LTR MaLR 0 428 187 2500 51 3 10 chr12 137525126 137525439 -6261016 - AluY SINE Alu 0 311 1 1751 165 78 98 chr12 137525439 137525623 -6260832 - MSTA LTR MaLR -241 187 1 198 0 0 0 chr12 137525843 137525865 -6260590 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 277 286 66 71 chr12 137526331 137526570 -6259885 - MIR SINE MIR -2 260 30 1952 156 0 25 chr12 137526686 137527001 -6259454 - AluSx SINE Alu -5 307 1 721 167 25 98 chr12 137527831 137528035 -6258420 + MLT1D LTR MaLR 1 189 -316 316 89 36 18 chr12 137528037 137528093 -6258362 + FRAM/FAM SINE Alu 31 87 -88 22 35 0 0 chr12 137528620 137528649 -6257806 + AT_rich Low_complexity Low_complexity 1 29 0 256 285 35 106 chr12 137529571 137529742 -6256713 - MER102a DNA MER1_type -1103 314 165 1602 156 45 24 chr12 137529742 137530031 -6256424 - L1MB1 LINE L1 -5 6163 5869 256 285 35 106 chr12 137530031 137530115 -6256340 - MER102a DNA MER1_type -1252 165 77 325 273 45 9 chr12 137530392 137530502 -6255953 - L1MA9 LINE L1 -131 6181 6068 678 135 14 35 chr12 137530605 137530746 -6255709 + L1MA9 LINE L1 5796 5933 -379 936 147 28 0 chr12 137530888 137531031 -6255424 - AluSg/x SINE Alu -29 281 135 273 208 0 0 chr12 137531032 137531080 -6255375 - L1M4 LINE L1 -2291 3855 3808 2401 102 0 0 chr12 137531095 137531408 -6255047 - AluSq SINE Alu 0 313 1 433 295 35 40 chr12 137531418 137531618 -6254837 - MLT1C LTR MaLR -76 391 193 1714 134 4 8 chr12 137531644 137531897 -6254558 - AluSp SINE Alu 0 313 62 1389 129 0 5 chr12 137532036 137532237 -6254218 - AluSq SINE Alu -113 200 1 544 206 37 0 chr12 137532241 137532348 -6254107 - L1MEc LINE L1 -4688 1708 1598 2794 38 0 0 chr12 137532355 137532673 -6253782 + AluYb8 SINE Alu 1 318 0 211 288 27 27 chr12 137532904 137532977 -6253478 - MIR3 SINE MIR -47 161 89 364 265 121 18 chr12 137532982 137533148 -6253307 + L2 LINE L2 2665 2847 -467 378 248 57 9 chr12 137533488 137533593 -6252862 + L2 LINE L2 3162 3271 -1 196 170 0 43 chr12 137533720 137533767 -6252688 - MIR SINE MIR -33 229 185 364 208 39 34 chr12 137533787 137533965 -6252490 + (TA)n Simple_repeat Simple_repeat 2 180 0 616 270 69 0 chr12 137534048 137534237 -6252218 - MIR SINE MIR -59 203 2 2141 88 50 0 chr12 137534614 137534897 -6251558 - AluSx SINE Alu -15 297 1 227 178 0 0 chr12 137535293 137535338 -6251117 + LTR66 LTR ERVL 400 444 -166 2090 148 29 69 chr12 137535616 137535672 -6250783 - THE1B LTR MaLR 0 364 307 2087 112 11 0 chr12 137535672 137535959 -6250496 - AluSg SINE Alu -20 290 1 2090 148 29 69 chr12 137535959 137536281 -6250174 - THE1B LTR MaLR -57 307 1 1679 169 0 71 chr12 137538269 137538595 -6247860 + AluJo SINE Alu 6 308 -4 211 206 29 15 chr12 137539256 137539324 -6247131 + T-rich Low_complexity Low_complexity 1 69 0 25 51 0 0 chr12 137539350 137539389 -6247066 + AT_rich Low_complexity Low_complexity 1 39 0 42 20 0 0 chr12 137539440 137539489 -6246966 + AT_rich Low_complexity Low_complexity 1 49 0 2193 81 0 75 chr12 137539495 137539628 -6246827 - L1PA14 LINE L1 0 6161 6020 2049 122 3 10 chr12 137539628 137539922 -6246533 - AluSx SINE Alu -8 304 13 2193 81 0 75 chr12 137539922 137540123 -6246332 - L1PA14 LINE L1 -141 6020 5852 23 0 0 0 chr12 137540571 137540594 -6245861 + AT_rich Low_complexity Low_complexity 1 23 0 1895 78 11 22 chr12 137541182 137541452 -6245003 - L1PA13 LINE L1 -2 6161 5895 953 179 0 0 chr12 137541452 137541620 -6244835 - L1P LINE L1 -1875 4271 4104 1954 139 14 0 chr12 137543477 137543772 -6242683 + AluSx SINE Alu 1 299 -13 303 70 0 0 chr12 137544458 137544501 -6241954 + AluSg SINE Alu 34 76 -224 2831 13 0 0 chr12 137544501 137544810 -6241645 + AluYb8 SINE Alu 1 309 -9 1789 85 0 0 chr12 137544810 137545033 -6241422 + AluSg SINE Alu 67 289 -23 248 196 36 18 chr12 137545033 137545112 -6241343 + (TA)n Simple_repeat Simple_repeat 1 84 -30 1899 162 3 20 chr12 137545112 137545415 -6241040 + AluSx SINE Alu 3 300 -12 248 196 36 18 chr12 137545415 137545447 -6241008 + (TA)n Simple_repeat Simple_repeat 84 114 0 300 267 127 27 chr12 137546374 137546524 -6239931 + L1M4 LINE L1 4998 5162 -984 2308 127 68 38 chr12 137546526 137546973 -6239482 + MER4B LTR ERV1 192 610 0 237 65 0 0 chr12 137548543 137548574 -6237881 + (A)n Simple_repeat Simple_repeat 1 31 0 2099 116 0 20 chr12 137549004 137549305 -6237150 + AluSx SINE Alu 1 295 -17 2326 98 3 0 chr12 137550004 137550309 -6236146 + AluSp SINE Alu 1 306 -7 237 33 0 0 chr12 137550410 137550440 -6236015 + (TC)n Simple_repeat Simple_repeat 1 30 0 1134 262 98 35 chr12 137551049 137551541 -6234914 + L1MEc LINE L1 39 561 -5835 2498 74 3 0 chr12 137552335 137552647 -6233808 + AluSp SINE Alu 1 313 0 243 274 96 21 chr12 137552649 137552770 -6233685 - MIR SINE MIR -76 132 32 413 299 97 33 chr12 137552945 137553276 -6233179 + L1MCc LINE L1 17 368 -6055 237 350 25 71 chr12 137554014 137554340 -6232115 + MLT1H LTR MaLR 40 350 -199 268 331 174 17 chr12 137554457 137554629 -6231826 + L2 LINE L2 3115 3313 0 * 279 300 81 50 chr12 137554620 137554780 -6231675 - MIR SINE MIR -58 204 40 267 347 18 71 chr12 137555180 137555272 -6231183 - L2 LINE L2 -16 3297 3202 675 112 0 0 chr12 137555272 137555379 -6231076 + (TA)n Simple_repeat Simple_repeat 2 108 0 2355 94 0 0 chr12 137555380 137555678 -6230777 - AluSc SINE Alu -11 298 1 267 347 18 71 chr12 137555678 137555978 -6230477 - L2 LINE L2 -110 3203 2924 234 266 16 0 chr12 137556284 137556348 -6230107 + CT-rich Low_complexity Low_complexity 1 65 0 217 314 263 0 chr12 137556419 137556575 -6229880 + L3 LINE CR1 1288 1484 -93 316 216 29 140 chr12 137556577 137556748 -6229707 - LTR67 LTR ERVL -1 556 405 2825 122 7 7 chr12 137558282 137558710 -6227745 + MER84 LTR ERVI 1 428 -79 813 117 0 0 chr12 137558710 137558830 -6227625 - L1P4 LINE L1 -406 5757 5638 2179 130 26 8 chr12 137558958 137559335 -6227120 + MER84 LTR ERVI 45 428 -79 1422 67 0 0 chr12 137559335 137559513 -6226942 - L1PA13 LINE L1 -406 5757 5580 730 74 0 0 chr12 137559510 137559605 -6226850 + L1PA13 LINE L1 5790 5884 -284 * 356 93 0 0 chr12 137559606 137559660 -6226795 + L1PA13 LINE L1 6106 6159 -4 549 175 21 0 chr12 137559663 137559760 -6226695 + MER84 LTR ERVI 409 507 0 520 163 26 206 chr12 137559894 137560127 -6226328 - MLT2C1 LTR ERVL -5 392 202 201 143 41 20 chr12 137561044 137561093 -6225362 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 976 220 28 5 chr12 137561560 137561774 -6224681 + MER20 DNA MER1_type 1 219 0 750 313 56 10 chr12 137561911 137562215 -6224240 + MLT1J2 LTR MaLR 109 426 -24 329 247 12 12 chr12 137563496 137563581 -6222874 + MER91A DNA MER1_type 1 85 -111 213 39 0 0 chr12 137563901 137563927 -6222528 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 355 298 74 54 chr12 137564736 137565072 -6221383 - MLT1J1 LTR MaLR -94 352 10 1978 58 19 0 chr12 137566497 137566754 -6219701 + L1PA8 LINE L1 5909 6170 -2 847 234 23 5 chr12 137566864 137567078 -6219377 - MER20 DNA MER1_type -1 218 1 277 313 89 0 chr12 137567533 137567645 -6218810 + MLT1J2 LTR MaLR 283 404 -46 1898 158 10 3 chr12 137568759 137569057 -6217398 + AluSx SINE Alu 1 300 -12 296 312 74 30 chr12 137569266 137569468 -6216987 - MLT1K LTR MaLR -61 527 317 2277 246 29 4 chr12 137569514 137570062 -6216393 + MER68 LTR ERV1 1 562 0 2180 104 3 0 chr12 137570999 137571296 -6215159 + AluSx SINE Alu 1 298 -14 240 239 68 0 chr12 137571335 137571423 -6215032 - L2 LINE L2 -211 3061 2968 369 265 127 58 chr12 137571468 137571815 -6214640 - MLT1L LTR MaLR -28 587 217 362 264 17 6 chr12 137571987 137572165 -6214290 + GA-rich Low_complexity Low_complexity 1 180 0 275 278 23 0 chr12 137572187 137572363 -6214092 + GA-rich Low_complexity Low_complexity 1 180 0 247 246 0 16 chr12 137572580 137572641 -6213814 + (TG)n Simple_repeat Simple_repeat 1 60 0 1422 155 0 39 chr12 137573043 137573345 -6213110 - AluJo SINE Alu 0 326 35 378 282 117 7 chr12 137573348 137573646 -6212809 - HAL1 LINE L1 -1590 917 587 4133 82 48 3 chr12 137573772 137574356 -6212099 - LTR66 LTR ERVL 0 610 1 229 286 130 30 chr12 137574392 137574623 -6211832 - HAL1 LINE L1 -2243 264 11 207 0 0 0 chr12 137575428 137575451 -6211004 + (T)n Simple_repeat Simple_repeat 1 23 0 254 230 27 0 chr12 137576018 137576092 -6210363 + CT-rich Low_complexity Low_complexity 2 77 0 3947 100 5 0 chr12 137576541 137577092 -6209363 - MER41A LTR ERV1 0 554 1 1808 155 0 21 chr12 137577871 137578161 -6208294 - AluJb SINE Alu -28 284 1 1540 112 5 0 chr12 137578170 137578376 -6208079 - AluSg/x SINE Alu -13 296 90 4280 103 8 5 chr12 137578501 137579134 -6207321 - MER41B LTR ERV1 0 635 1 653 188 2 0 chr12 137579266 137579695 -6206760 + (TG)n Simple_repeat Simple_repeat 1 430 0 198 327 119 0 chr12 137579984 137580085 -6206370 + L2 LINE L2 3199 3311 -2 1942 84 67 3 chr12 137580882 137581166 -6205289 + AluY SINE Alu 1 302 -9 3779 137 22 2 chr12 137581386 137582008 -6204447 - MER41B LTR ERV1 0 635 1 22 0 0 0 chr12 137582085 137582107 -6204348 + AT_rich Low_complexity Low_complexity 1 22 0 235 286 75 75 chr12 137582722 137582869 -6203586 + MIR SINE MIR 59 205 -57 1753 264 43 23 chr12 137582982 137583686 -6202769 + Charlie1 DNA MER1_type 14 731 -2030 681 186 0 7 chr12 137583686 137583734 -6202721 + L1MA5A LINE L1 5984 6031 -266 1616 136 0 0 chr12 137583734 137583955 -6202500 + AluSg/x SINE Alu 71 291 -19 681 186 0 7 chr12 137583955 137584051 -6202404 + L1MA5A LINE L1 6031 6127 -170 852 161 28 17 chr12 137584415 137584595 -6201860 + L1MA5A LINE L1 6113 6294 -3 609 346 13 3 chr12 137584838 137585144 -6201311 + Charlie1 DNA MER1_type 940 1248 -1513 2137 101 0 29 chr12 137585207 137585514 -6200941 + AluSq SINE Alu 1 298 -15 3252 251 90 27 chr12 137585940 137586388 -6200067 + Charlie1 DNA MER1_type 1239 1657 -1104 2549 44 3 25 chr12 137586388 137586706 -6199749 + AluY SINE Alu 1 311 0 3252 251 90 27 chr12 137586706 137587681 -6198774 + Charlie1 DNA MER1_type 1657 2752 -9 189 338 15 0 chr12 137587716 137587784 -6198671 + L2 LINE L2 3244 3312 -1 367 270 13 40 chr12 137587858 137588061 -6198394 - MLT1J1 LTR MaLR -8 481 309 250 284 20 10 chr12 137590141 137590243 -6196212 + (TA)n Simple_repeat Simple_repeat 1 103 0 375 286 104 51 chr12 137590791 137591127 -6195328 - LTR16C LTR ERVL 0 491 138 2089 240 23 5 chr12 137591924 137592479 -6193976 - L1MB5 LINE L1 -10 6164 5600 1122 218 76 16 chr12 137592480 137592661 -6193794 + L1MB7 LINE L1 5012 5181 -993 2134 88 17 10 chr12 137592661 137592985 -6193470 + AluY SINE Alu 1 311 0 1122 218 76 16 chr12 137592985 137593251 -6193204 + L1MB7 LINE L1 5181 5504 -670 243 88 0 0 chr12 137593251 137593285 -6193170 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1122 218 76 16 chr12 137593285 137593402 -6193053 + L1MB7 LINE L1 5504 5613 -561 356 94 0 0 chr12 137593420 137593473 -6192982 - MADE1 DNA Mariner 0 80 28 275 88 0 70 chr12 137593572 137593629 -6192826 - MADE1 DNA Mariner -27 53 1 1071 177 48 16 chr12 137593630 137593879 -6192576 + L1MB7 LINE L1 5634 5890 -288 2353 98 0 25 chr12 137593882 137594199 -6192256 + AluSc SINE Alu 1 309 0 1406 242 108 17 chr12 137594223 137594686 -6191769 - MLT1D LTR MaLR 0 505 1 1750 184 3 10 chr12 137594710 137595019 -6191436 - AluJo SINE Alu -5 307 1 1231 162 73 0 chr12 137595019 137595266 -6191189 + L1MB7 LINE L1 5910 6174 -10 202 234 0 0 chr12 137595622 137595669 -6190786 + (TAA)n Simple_repeat Simple_repeat 1 47 0 2240 114 0 7 chr12 137595716 137596014 -6190441 - AluSx SINE Alu -16 296 1 454 326 63 25 chr12 137596015 137596254 -6190201 - MIR SINE MIR -3 259 12 636 247 87 0 chr12 137597827 137597977 -6188478 - FAM SINE Alu -12 163 1 2657 32 0 0 chr12 137598049 137598358 -6188097 + AluY SINE Alu 1 309 -2 752 285 11 27 chr12 137599700 137599963 -6186492 - LTR16C LTR ERVL -19 472 214 539 355 89 19 chr12 137599969 137600338 -6186117 + L2 LINE L2 438 832 -2482 2038 165 0 16 chr12 137600909 137601224 -6185231 + AluSx SINE Alu 1 310 -2 237 83 0 0 chr12 137601851 137601887 -6184568 + (TC)n Simple_repeat Simple_repeat 1 36 0 601 248 7 0 chr12 137601892 137602037 -6184418 - MER6 DNA MER2_type 0 865 -1 378 226 0 23 chr12 137602042 137602175 -6184280 + (TTTA)n Simple_repeat Simple_repeat 2 131 0 618 220 0 0 chr12 137602178 137602355 -6184100 + (TA)n Simple_repeat Simple_repeat 1 177 0 315 340 28 16 chr12 137602478 137602725 -6183730 - MLT1K LTR MaLR -12 576 327 600 302 42 14 chr12 137602903 137603128 -6183327 + MIR SINE MIR 25 252 -10 361 279 50 44 chr12 137603253 137603411 -6183044 - MIR SINE MIR -65 143 26 222 365 10 19 chr12 137605294 137605398 -6181057 + MIR SINE MIR 90 192 -70 1990 143 3 16 chr12 137605842 137606156 -6180299 + AluSx SINE Alu 1 310 -2 233 307 0 63 chr12 137606290 137606417 -6180038 - MER117 DNA MER1_type -65 132 14 441 271 70 37 chr12 137606839 137607053 -6179402 - MLT1J LTR MaLR -290 221 1 1527 209 36 0 chr12 137608223 137608501 -6177954 + AluJo SINE Alu 1 288 -24 2236 86 0 25 chr12 137608510 137608825 -6177630 + AluY SINE Alu 1 307 -4 1695 176 40 111 chr12 137608895 137609120 -6177335 + L1MA9 LINE L1 5607 5846 -466 393 39 0 0 chr12 137609120 137609171 -6177284 + (TG)n Simple_repeat Simple_repeat 2 52 0 1695 176 40 111 chr12 137609171 137609513 -6176942 + L1MA9 LINE L1 5846 6134 -178 213 152 0 0 chr12 137609984 137610017 -6176438 + L2 LINE L2 3281 3313 0 234 59 0 0 chr12 137610027 137610061 -6176394 - HSMAR1 DNA Mariner -1253 34 1 28 0 0 0 chr12 137610085 137610113 -6176342 + AT_rich Low_complexity Low_complexity 1 28 0 1584 198 7 13 chr12 137610217 137610520 -6175935 + AluJo SINE Alu 1 301 -11 1612 215 43 54 chr12 137610621 137611247 -6175208 - LTR28 LTR ERV1 -22 804 109 391 249 52 3 chr12 137611261 137611420 -6175035 - LTR28 LTR ERV1 -462 174 3 23 33 0 0 chr12 137611457 137611487 -6174968 + AT_rich Low_complexity Low_complexity 1 30 0 435 198 17 34 chr12 137612627 137612804 -6173651 + (TATG)n Simple_repeat Simple_repeat 3 176 0 509 210 11 28 chr12 137612849 137613030 -6173425 + (TATG)n Simple_repeat Simple_repeat 1 178 0 291 304 22 0 chr12 137613037 137613129 -6173326 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 360 169 0 0 chr12 137613130 137613207 -6173248 + (TG)n Simple_repeat Simple_repeat 2 78 0 976 100 62 12 chr12 137613310 137613470 -6172985 + L1PA11 LINE L1 6007 6174 0 4903 182 19 6 chr12 137613792 137614781 -6171674 + L1MC1 LINE L1 5321 6322 -11 1965 181 14 27 chr12 137615714 137616084 -6170371 - MLT1A1 LTR MaLR 0 365 1 26 50 0 0 chr12 137616441 137616481 -6169974 + AT_rich Low_complexity Low_complexity 1 40 0 302 257 86 11 chr12 137616808 137616995 -6169460 - MER114 LTR ERV -3 645 445 347 204 45 53 chr12 137617035 137617167 -6169288 - L1MA7 LINE L1 -7 6284 6154 530 257 51 80 chr12 137617331 137617857 -6168598 + MER34 LTR ERV1 4 514 -28 405 309 56 13 chr12 137617926 137618159 -6168296 + L1MCc LINE L1 81 323 -6100 527 159 8 91 chr12 137618175 137618307 -6168148 - LTR8 LTR ERV1 0 691 571 507 318 92 54 chr12 137618307 137618885 -6167570 + L1MCc LINE L1 365 964 -5459 674 274 88 19 chr12 137618890 137619255 -6167200 + L1MCc LINE L1 1020 1409 -5014 349 332 111 5 chr12 137619283 137619491 -6166964 + L2 LINE L2 3084 3313 0 2032 78 3 35 chr12 137620277 137620559 -6165896 + AluSp SINE Alu 39 311 -2 468 249 52 35 chr12 137621097 137621270 -6165185 + MIR SINE MIR 61 236 -26 3096 46 37 0 chr12 137621282 137621692 -6164763 + L1PA3 LINE L1 5731 6155 0 436 155 60 115 chr12 137621868 137621987 -6164468 + LTR36 LTR ERV1 1 106 -505 1666 197 7 0 chr12 137621987 137622282 -6164173 - AluJo SINE Alu -15 297 1 436 155 60 115 chr12 137622282 137622362 -6164093 + LTR36 LTR ERV1 106 189 -422 876 199 122 9 chr12 137622417 137622638 -6163817 + LTR36 LTR ERV1 366 611 0 2005 104 27 14 chr12 137622769 137623066 -6163389 + AluSx SINE Alu 1 301 -11 337 262 0 0 chr12 137624754 137624838 -6161617 + MER20 DNA MER1_type 2 85 -134 32 0 0 0 chr12 137625465 137625497 -6160958 + AT_rich Low_complexity Low_complexity 1 32 0 1227 223 17 58 chr12 137625502 137625794 -6160661 + AluJo SINE Alu 3 282 -30 22 35 0 0 chr12 137625897 137625926 -6160529 + AT_rich Low_complexity Low_complexity 1 29 0 285 95 48 0 chr12 137626111 137626174 -6160281 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 443 178 30 104 chr12 137626320 137626455 -6160000 - LTR8A LTR ERV1 0 727 603 923 176 17 6 chr12 137626487 137626663 -6159792 - MER61E LTR ERV1 -51 518 341 225 241 0 35 chr12 137626702 137626760 -6159695 - MER61E LTR ERV1 -397 172 117 * 309 238 0 89 chr12 137626736 137626837 -6159618 - MER61E LTR ERV1 -379 190 99 * 335 268 36 9 chr12 137626834 137626946 -6159509 - LTR25 LTR ERV1 -431 363 249 2163 168 59 29 chr12 137627102 137627590 -6158865 - LTR8A LTR ERV1 -191 536 34 3654 108 101 0 chr12 137627603 137628176 -6158279 + MER41B LTR ERV1 1 631 -4 798 249 64 57 chr12 137628184 137628235 -6158220 - MLT2C1 LTR ERVL 0 397 348 258 32 0 0 chr12 137628235 137628266 -6158189 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 798 249 64 57 chr12 137628266 137628568 -6157887 - MLT2C1 LTR ERVL -49 348 38 1195 225 46 14 chr12 137628568 137628919 -6157536 + MLT1A1 LTR MaLR 4 365 0 798 249 64 57 chr12 137628919 137628953 -6157502 - MLT2C1 LTR ERVL -359 38 6 2270 99 0 0 chr12 137629949 137630243 -6156212 + AluY SINE Alu 1 294 -17 337 292 122 87 chr12 137630256 137630568 -6155887 - L2 LINE L2 -13 3259 2937 521 270 78 43 chr12 137630755 137630985 -6155470 + MLT1H LTR MaLR 104 341 -208 25 0 0 0 chr12 137631133 137631158 -6155297 + AT_rich Low_complexity Low_complexity 1 25 0 3863 193 33 54 chr12 137632832 137633808 -6152647 - LTR5 LTR ERVK -14 955 1 859 281 30 13 chr12 137633912 137634215 -6152240 + MLT1I LTR MaLR 102 409 0 3336 175 37 61 chr12 137634981 137635785 -6150670 - LTR1 LTR ERV1 0 785 1 22 35 0 0 chr12 137636194 137636223 -6150232 + AT_rich Low_complexity Low_complexity 1 29 0 861 234 44 5 chr12 137636933 137637138 -6149317 - MER20 DNA MER1_type -1 218 6 3150 194 25 35 chr12 137637143 137637970 -6148485 + L1M2 LINE L1 4114 4932 -1214 751 133 17 28 chr12 137637975 137638156 -6148299 + GA-rich Low_complexity Low_complexity 2 180 0 451 184 26 13 chr12 137638177 137638329 -6148126 + GA-rich Low_complexity Low_complexity 4 157 0 1346 194 11 46 chr12 137638330 137638941 -6147514 + L1M2 LINE L1 4944 5641 -671 711 131 0 0 chr12 137639206 137639305 -6147150 - AluSc SINE Alu -21 288 190 255 403 10 5 chr12 137639410 137639616 -6146839 - MLT1I LTR MaLR -155 254 48 26 30 0 0 chr12 137640415 137640448 -6146007 + AT_rich Low_complexity Low_complexity 1 33 0 239 368 66 16 chr12 137640544 137640726 -6145729 + LTR33 LTR ERVL 29 219 -302 430 268 33 27 chr12 137640785 137640968 -6145487 + LTR33 LTR ERVL 330 513 -8 2287 81 10 3 chr12 137641583 137641881 -6144574 - AluSg SINE Alu -10 300 1 7580 20 17 0 chr12 137642797 137643776 -6142679 - L1PA3 LINE L1 -5 6150 5170 684 125 0 70 chr12 137644094 137644222 -6142233 + AluSg/x SINE Alu 181 299 -13 22 0 0 0 chr12 137644303 137644325 -6142130 + AT_rich Low_complexity Low_complexity 1 22 0 218 357 98 7 chr12 137644949 137645092 -6141363 - L2 LINE L2 0 3272 3117 520 261 141 20 chr12 137645324 137645523 -6140932 + MIR SINE MIR 39 261 -1 423 222 14 7 chr12 137645787 137645931 -6140524 + CT-rich Low_complexity Low_complexity 1 145 0 337 277 34 8 chr12 137645933 137646052 -6140403 - MER58C DNA MER1_type -83 132 11 391 279 103 22 chr12 137647008 137647144 -6139311 - MER5B DNA MER1_type -5 173 27 1378 207 7 0 chr12 137647145 137647440 -6139015 + L1MA4 LINE L1 5978 6274 -26 671 247 0 13 chr12 137647469 137647623 -6138832 + FRAM SINE Alu 22 173 -3 633 170 14 14 chr12 137647626 137647773 -6138682 + GA-rich Low_complexity Low_complexity 2 148 0 207 0 0 0 chr12 137648526 137648549 -6137906 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 389 304 166 35 chr12 137648840 137649297 -6137158 - LTR33 LTR ERVL 0 521 5 3350 154 13 5 chr12 137649375 137649971 -6136484 + L1PA15 LINE L1 5565 6165 0 197 322 73 44 chr12 137651146 137651351 -6135104 + L2 LINE L2 2312 2522 -792 3564 178 7 64 chr12 137651352 137652228 -6134227 + L1MA7 LINE L1 5466 6291 0 2859 87 8 2 chr12 137652473 137652866 -6133589 - L1PB1 LINE L1 -9 6142 5748 987 181 15 5 chr12 137652935 137653139 -6133316 - MER84 LTR ERVI 0 507 302 999 131 44 27 chr12 137653218 137653440 -6133015 - MER84 LTR ERVI -210 297 1 491 273 35 7 chr12 137653676 137653819 -6132636 + MIR SINE MIR 36 182 -80 2015 124 10 7 chr12 137653881 137654221 -6132234 - AluSg1 SINE Alu 0 309 1 364 281 198 8 chr12 137654632 137654753 -6131702 + MER5A DNA MER1_type 45 188 -1 277 320 125 8 chr12 137654928 137655056 -6131399 + MIR SINE MIR 49 191 -71 231 339 51 34 chr12 137655063 137655181 -6131274 - MER5A DNA MER1_type -20 169 50 314 274 104 28 chr12 137655631 137655843 -6130612 - L1MCa LINE L1 -5040 1386 1159 25 75 0 0 chr12 137655862 137655915 -6130540 + AT_rich Low_complexity Low_complexity 1 53 0 296 175 42 58 chr12 137656261 137656381 -6130074 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 260 223 72 18 chr12 137656299 137656465 -6129990 + (TA)n Simple_repeat Simple_repeat 2 176 0 * 205 353 52 17 chr12 137656538 137656654 -6129801 - MIR SINE MIR -115 147 28 2279 128 8 22 chr12 137657904 137658272 -6128183 - THE1B LTR MaLR -1 363 1 11685 98 3 1 chr12 137658272 137659848 -6126607 - THE1B-int LTR MaLR 0 1580 1 2509 98 5 40 chr12 137659848 137660225 -6126230 - THE1B LTR MaLR 0 364 1 682 286 33 0 chr12 137660422 137660604 -6125851 + MER5A DNA MER1_type 2 189 0 3972 104 19 2 chr12 137660648 137661235 -6125220 + L1PA14 LINE L1 5565 6161 0 287 24 0 0 chr12 137661195 137661236 -6125219 + L1PA15 LINE L1 6122 6162 -3 457 249 65 75 chr12 137661238 137661439 -6125016 - MER58A DNA MER1_type -25 199 1 284 339 8 42 chr12 137661490 137661608 -6124847 + L2 LINE L2 3175 3288 -25 1132 168 45 48 chr12 137662613 137662905 -6123550 + THE1C LTR MaLR 85 375 0 947 243 24 62 chr12 137663027 137663364 -6123091 - MER63B DNA MER1_type -108 328 5 387 255 100 35 chr12 137664024 137664255 -6122200 - LTR33A LTR ERVL -147 376 131 516 367 0 6 chr12 137665100 137665258 -6121197 + MIR SINE MIR 6 162 -100 420 326 66 22 chr12 137665287 137665468 -6120987 + L2 LINE L2 2924 3112 -160 2150 129 0 16 chr12 137665494 137665797 -6120658 + AluSx SINE Alu 1 298 -14 4858 99 17 25 chr12 137665834 137666610 -6119845 - L1PA12 LINE L1 -8 6160 5391 231 375 27 9 chr12 137666645 137666757 -6119698 + L2 LINE L2 3175 3288 -25 1535 166 25 27 chr12 137667235 137667598 -6118857 + MLT2A2 LTR ERVL 17 309 -144 273 51 26 0 chr12 137667601 137667675 -6118780 - AluSp/q SINE Alu 0 322 248 324 268 93 35 chr12 137667907 137668217 -6118238 + MLT1J2 LTR MaLR 5 332 -118 1780 174 34 66 chr12 137668225 137668419 -6118036 - MLT2A2 LTR ERVL 0 554 355 2071 117 4 0 chr12 137668419 137668700 -6117755 + AluSq SINE Alu 5 286 -27 1780 174 34 66 chr12 137668700 137669096 -6117359 - MLT2A2 LTR ERVL -199 355 3 358 242 0 11 chr12 137669121 137669212 -6117243 + MLT1J1 LTR MaLR 357 446 0 4344 188 50 11 chr12 137670081 137670970 -6115485 - MER49 LTR ERV1 0 923 1 233 56 0 28 chr12 137671246 137671282 -6115173 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 1752 191 31 30 chr12 137671622 137672179 -6114276 + MLT2A2 LTR ERVL 1 554 0 2491 62 3 0 chr12 137674070 137674374 -6112081 - AluSp SINE Alu -8 305 1 1852 76 76 64 chr12 137675279 137675442 -6111013 + L1PB1 LINE L1 5446 5606 -545 2402 81 0 0 chr12 137675442 137675740 -6110715 + AluY SINE Alu 1 298 -13 1852 76 76 64 chr12 137675740 137675919 -6110536 + L1PB1 LINE L1 5606 5792 -359 393 206 0 0 chr12 137675923 137676015 -6110440 + (TA)n Simple_repeat Simple_repeat 2 93 0 2597 81 3 3 chr12 137676030 137676400 -6110055 + L1PB1 LINE L1 5782 6151 0 26 0 0 0 chr12 137676400 137676426 -6110029 + AT_rich Low_complexity Low_complexity 1 26 0 239 0 32 0 chr12 137676982 137677013 -6109442 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1927 127 47 0 chr12 137677016 137677166 -6109289 - AluSq SINE Alu -24 289 148 282 29 0 0 chr12 137677166 137677201 -6109254 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 1927 127 47 0 chr12 137677201 137677326 -6109129 - AluSq SINE Alu -165 148 1 559 311 34 6 chr12 137678826 137679003 -6107452 - MIR SINE MIR -37 225 44 481 288 52 34 chr12 137679192 137679425 -6107030 + MER110 LTR ERV1 215 451 -40 260 59 0 0 chr12 137679447 137679481 -6106974 + MADE1 DNA Mariner 46 79 -1 213 94 0 0 chr12 137680706 137680738 -6105717 + (TC)n Simple_repeat Simple_repeat 2 33 0 543 256 0 0 chr12 137680917 137681268 -6105187 + (CA)n Simple_repeat Simple_repeat 1 351 0 1112 120 38 0 chr12 137681966 137682124 -6104331 - AluSg/x SINE Alu -12 300 137 1174 71 18 0 chr12 137682526 137682695 -6103760 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 483 118 0 0 chr12 137682695 137682771 -6103684 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 219 186 0 0 chr12 137682790 137682833 -6103622 + A-rich Low_complexity Low_complexity 3 45 0 214 339 68 0 chr12 137684131 137684249 -6102206 - MIR SINE MIR -64 198 73 1777 209 36 78 chr12 137685235 137685813 -6100642 + MLT2B3 LTR ERVL 1 554 0 181 302 207 17 chr12 137685953 137686069 -6100386 - MIR SINE MIR -12 250 113 232 301 107 19 chr12 137686158 137686261 -6100194 + MER5B DNA MER1_type 7 118 -60 266 322 105 65 chr12 137686359 137686931 -6099524 - L2 LINE L2 -571 2743 2149 327 170 0 0 chr12 137687279 137687332 -6099123 + U4 snRNA snRNA 1 53 -92 954 16 142 0 chr12 137687357 137687484 -6098971 - L1PA4 LINE L1 -3 6152 6008 577 183 29 0 chr12 137687484 137687588 -6098867 + U4 snRNA snRNA 38 144 -1 2465 60 7 0 chr12 137687932 137688233 -6098222 + AluY SINE Alu 1 303 -8 28 86 0 0 chr12 137688643 137688713 -6097742 + AT_rich Low_complexity Low_complexity 1 70 0 2380 58 3 7 chr12 137688856 137689166 -6097289 + AluY SINE Alu 1 309 -2 2313 108 14 0 chr12 137689377 137689673 -6096782 + AluSx SINE Alu 1 300 -12 375 243 0 27 chr12 137690191 137690302 -6096153 - MER63 DNA MER1_type -84 752 19 1449 166 114 12 chr12 137690471 137690803 -6095652 + MSTB2 LTR MaLR 92 457 0 213 328 31 0 chr12 137690803 137690867 -6095588 - MIR SINE MIR -189 73 8 919 198 37 70 chr12 137691257 137691500 -6094955 - L1MDa LINE L1 -6286 254 20 26 0 0 0 chr12 137691507 137691533 -6094922 + AT_rich Low_complexity Low_complexity 1 26 0 290 259 65 37 chr12 137691534 137691642 -6094813 - L2 LINE L2 -1093 2221 2111 1968 144 23 3 chr12 137691654 137691953 -6094502 + AluJo SINE Alu 1 305 -7 262 301 0 0 chr12 137692535 137692608 -6093847 - MIR3 SINE MIR -47 161 89 625 323 99 28 chr12 137692613 137693216 -6093239 + L2 LINE L2 2665 3309 -4 852 163 20 0 chr12 137693268 137693421 -6093034 + L1PB1 LINE L1 5996 6151 0 900 212 24 80 chr12 137693533 137693910 -6092545 - L1MC4 LINE L1 -1 8041 7686 2482 90 36 3 chr12 137694003 137694359 -6092096 - L1PB1 LINE L1 -2 6149 5782 333 118 0 0 chr12 137694359 137694410 -6092045 + (TG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr12 137694411 137694437 -6092018 + (TA)n Simple_repeat Simple_repeat 1 26 0 570 104 42 10 chr12 137694437 137694533 -6091922 - L1PB1 LINE L1 -360 5791 5693 2584 240 62 73 chr12 137694543 137695240 -6091215 - L1MC4 LINE L1 -364 7678 7000 1921 157 0 0 chr12 137695240 137695534 -6090921 + AluSx SINE Alu 1 294 -18 2584 240 62 73 chr12 137695534 137696071 -6090384 - L1MC4 LINE L1 -1042 7000 6458 973 241 118 13 chr12 137696158 137696556 -6089899 + MLT1D LTR MaLR 64 503 -2 198 0 0 0 chr12 137696667 137696689 -6089766 + (CAGCT)n Simple_repeat Simple_repeat 3 24 0 399 266 24 16 chr12 137696814 137696938 -6089517 - MIR SINE MIR -110 152 28 317 258 93 0 chr12 137697017 137697114 -6089341 + MIR SINE MIR 138 243 -19 4611 140 15 12 chr12 137697574 137698425 -6088030 + L1PB3 LINE L1 5225 6077 -77 233 258 48 16 chr12 137698660 137698722 -6087733 + L2 LINE L2 3128 3191 -81 278 306 9 45 chr12 137699044 137699155 -6087300 - MIR SINE MIR -82 126 20 203 115 39 39 chr12 137699977 137700029 -6086426 + A-rich Low_complexity Low_complexity 2 53 0 304 320 20 0 chr12 137701446 137701546 -6084909 - L1MC4 LINE L1 -1327 6715 6614 281 228 0 22 chr12 137701577 137701669 -6084786 - L1MC4 LINE L1 -1339 6703 6614 236 267 0 22 chr12 137701597 137701687 -6084768 + L1MC4 LINE L1 6616 6703 -1339 * 552 261 93 37 chr12 137702441 137702507 -6083948 - MLT1F LTR MaLR 0 542 481 2067 129 38 0 chr12 137702507 137702794 -6083661 - AluSg SINE Alu -12 298 1 552 261 93 37 chr12 137702794 137703205 -6083250 - MLT1F LTR MaLR -61 481 11 1677 219 33 24 chr12 137703515 137703968 -6082487 + MLT1C LTR MaLR 11 467 0 324 162 30 81 chr12 137704507 137704606 -6081849 + L1MC4 LINE L1 6610 6703 -1339 190 143 0 71 chr12 137704606 137704662 -6081793 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 308 262 71 0 chr12 137704662 137704746 -6081709 - L1MC4 LINE L1 -1339 6703 6614 239 321 45 18 chr12 137705809 137705921 -6080534 + MIR3 SINE MIR 50 164 -44 360 264 139 53 chr12 137706001 137706209 -6080246 + Charlie8 DNA MER1_type 40 265 -2152 534 306 90 18 chr12 137706690 137706912 -6079543 - MIR SINE MIR 0 262 25 660 202 45 6 chr12 137707528 137707706 -6078749 + MER53 DNA DNA 2 186 -3 2167 101 0 38 chr12 137708588 137708904 -6077551 + AluSg SINE Alu 2 305 -5 657 286 40 36 chr12 137708919 137709248 -6077207 + L1MDa LINE L1 17 346 -6194 3082 239 47 14 chr12 137709464 137710919 -6075536 + L1MDa LINE L1 828 2318 -4222 201 129 0 0 chr12 137710923 137710954 -6075501 + (TG)n Simple_repeat Simple_repeat 1 31 0 414 57 0 0 chr12 137711074 137711127 -6075328 + (CA)n Simple_repeat Simple_repeat 2 54 0 609 236 58 0 chr12 137711127 137711369 -6075086 + L1MDa LINE L1 2339 2594 -3946 1049 186 5 42 chr12 137711371 137711586 -6074869 - MER6B DNA MER2_type -3 207 1 267 259 0 0 chr12 137711594 137711679 -6074776 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 356 273 13 13 chr12 137711802 137711952 -6074503 + (TA)n Simple_repeat Simple_repeat 2 151 0 1946 105 0 19 chr12 137713041 137713308 -6073147 - AluSq SINE Alu -11 302 41 231 157 0 0 chr12 137713803 137713854 -6072601 + GA-rich Low_complexity Low_complexity 2 52 0 198 0 0 0 chr12 137713926 137713948 -6072507 + (TG)n Simple_repeat Simple_repeat 2 23 0 2411 102 41 36 chr12 137714054 137714416 -6072039 + THE1B LTR MaLR 1 364 0 218 400 93 0 chr12 137714980 137715120 -6071335 + MIR SINE MIR 103 255 -7 2654 127 33 24 chr12 137715123 137715191 -6071264 - MSTA LTR MaLR 0 428 362 2064 111 20 27 chr12 137715191 137715488 -6070967 + AluSx SINE Alu 1 295 -17 2654 127 33 24 chr12 137715488 137715843 -6070612 - MSTA LTR MaLR -66 362 1 204 262 33 0 chr12 137716500 137716561 -6069894 - L2 LINE L2 -1 3271 3209 300 297 137 23 chr12 137717677 137717852 -6068603 - MER58A DNA MER1_type -29 195 1 427 381 41 4 chr12 137717969 137718213 -6068242 + MIR SINE MIR 10 262 0 342 317 0 0 chr12 137719161 137719262 -6067193 - MIR SINE MIR -23 239 139 2123 108 0 7 chr12 137719747 137720043 -6066412 + AluSq SINE Alu 5 298 -15 293 293 57 0 chr12 137720679 137720785 -6065670 + MIR SINE MIR 87 198 -64 287 143 29 57 chr12 137720977 137721047 -6065408 + HSMAR1 DNA Mariner 1 68 -1219 32 81 0 0 chr12 137721092 137721166 -6065289 + AT_rich Low_complexity Low_complexity 1 74 0 1235 260 17 20 chr12 137721493 137721843 -6064612 - MER63D DNA MER1_type -1 1060 712 230 279 0 0 chr12 137721863 137721924 -6064531 - MER63D DNA MER1_type -619 442 382 1327 193 22 7 chr12 137721924 137722198 -6064257 + L1MB7 LINE L1 5849 6126 -58 * 6698 45 1 0 chr12 137722196 137722991 -6063464 - L1PA5 LINE L1 -5 6149 5354 6523 60 5 2 chr12 137722990 137723838 -6062617 + L1PA5 LINE L1 4519 5368 -778 * 398 127 0 0 chr12 137723807 137723870 -6062585 + L1MB7 LINE L1 6114 6176 -8 * 289 104 78 17 chr12 137724317 137724432 -6062023 + (TA)n Simple_repeat Simple_repeat 1 122 0 232 285 19 19 chr12 137724537 137724648 -6061807 - MLT1C LTR MaLR -14 429 263 3247 142 70 16 chr12 137724780 137725279 -6061176 + MER1A DNA MER1_type 1 526 -1 31 26 0 0 chr12 137726018 137726056 -6060399 + AT_rich Low_complexity Low_complexity 1 38 0 667 269 108 11 chr12 137727319 137727587 -6058868 + MER113 DNA MER1_type? 206 499 -22 301 213 63 126 chr12 137728846 137729020 -6057435 + Charlie8 DNA MER1_type 2 164 -2253 424 289 42 30 chr12 137729300 137729466 -6056989 + MIR SINE MIR 16 183 -79 472 109 0 141 chr12 137729850 137729888 -6056567 + MADE1 DNA Mariner 1 43 -37 2414 86 0 3 chr12 137729888 137730202 -6056253 - AluSq SINE Alu 0 313 1 2055 134 0 0 chr12 137730204 137730502 -6055953 - AluSx SINE Alu -14 298 1 472 109 0 141 chr12 137730502 137730552 -6055903 + MADE1 DNA Mariner 44 79 -1 370 298 211 29 chr12 137730782 137731124 -6055331 - L2 LINE L2 -32 3281 2878 393 288 116 0 chr12 137731135 137731281 -6055174 - MIR SINE MIR -60 202 40 2115 117 0 0 chr12 137732377 137732682 -6053773 + AluSx SINE Alu 1 305 0 1976 141 0 16 chr12 137732789 137733102 -6053353 - AluSx SINE Alu -4 308 1 468 149 0 11 chr12 137733112 137733206 -6053249 - L1PA13 LINE L1 -4 6159 6067 180 0 0 0 chr12 137733831 137733851 -6052604 + (A)n Simple_repeat Simple_repeat 1 20 0 3231 132 89 109 chr12 137734265 137735066 -6051389 + LTR1 LTR ERV1 1 785 0 215 258 0 32 chr12 137736387 137736449 -6050006 + CT-rich Low_complexity Low_complexity 2 61 0 21 0 0 0 chr12 137737869 137737890 -6048565 + AT_rich Low_complexity Low_complexity 1 21 0 215 272 0 76 chr12 137738066 137738158 -6048297 - MIR SINE MIR 0 262 178 194 286 0 0 chr12 137738175 137738224 -6048231 - MIR SINE MIR -4 258 210 1953 164 0 0 chr12 137738239 137738531 -6047924 + AluSx SINE Alu 6 297 -15 1768 240 77 49 chr12 137738605 137739193 -6047262 - MLT1E2 LTR MaLR -1 625 22 1602 99 5 0 chr12 137789770 137789971 -5996484 - AluSq SINE Alu -111 202 1 628 286 8 28 chr12 137790051 137790339 -5996116 - L1MC5 LINE L1 -1010 7032 6677 1129 266 60 25 chr12 137790355 137790874 -5995581 - L1M4 LINE L1 -1376 4770 4234 1372 143 21 9 chr12 137791066 137791424 -5995031 - HERVH LTR ERV1 -3555 4258 3806 * 7217 151 1 12 chr12 137791418 137792622 -5993833 - HERVH LTR ERV1 -4126 3587 2397 489 95 14 0 chr12 137792722 137792796 -5993659 - MLT2B2 LTR ERVL -439 76 2 292 263 26 79 chr12 137792887 137793039 -5993416 + L1MC4a LINE L1 6142 6285 -1523 306 298 105 16 chr12 137793764 137793888 -5992567 - MIR SINE MIR -71 191 57 22 0 0 0 chr12 137794071 137794093 -5992362 + AT_rich Low_complexity Low_complexity 1 22 0 350 171 7 164 chr12 137795034 137795174 -5991281 + MER102b DNA MER1_type 210 327 -14 225 118 0 0 chr12 137795398 137795432 -5991023 - Alu SINE Alu -131 170 137 2148 128 0 3 chr12 137795436 137795742 -5990713 - AluSx SINE Alu -6 306 2 1633 115 4 0 chr12 137796520 137796746 -5989709 + AluSx SINE Alu 55 281 -31 294 29 0 0 chr12 137796748 137796783 -5989672 + (CA)n Simple_repeat Simple_repeat 2 36 0 2067 87 4 0 chr12 137798129 137798394 -5988061 + AluSp SINE Alu 30 295 -18 387 315 83 23 chr12 137799281 137799497 -5986958 - LTR16C LTR ERVL 0 491 263 306 73 0 0 chr12 137799734 137799775 -5986680 + (GA)n Simple_repeat Simple_repeat 2 42 0 1947 151 3 0 chr12 137799937 137800228 -5986227 - AluSx SINE Alu -20 292 1 424 309 103 29 chr12 137800930 137801134 -5985321 - MLT1K LTR MaLR -287 301 83 618 312 52 32 chr12 137801316 137801755 -5984700 - L1ME LINE L1 -354 5767 5320 22 35 0 0 chr12 137801822 137801851 -5984604 + AT_rich Low_complexity Low_complexity 1 29 0 253 306 81 16 chr12 137802493 137802617 -5983838 + L2 LINE L2 3168 3299 -14 1876 106 8 11 chr12 137802661 137802946 -5983509 - AluSx SINE Alu 0 305 22 1614 162 5 4 chr12 137803125 137803500 -5982955 + HERVH LTR ERV1 4100 4529 -3184 2698 174 2 0 chr12 137803500 137803959 -5982496 + HERVH LTR ERV1 6489 6948 -765 287 68 0 136 chr12 137803953 137804012 -5982443 + HERVH LTR ERV1 7663 7713 0 * 2588 144 0 61 chr12 137804013 137804491 -5981964 + HERVH LTR ERV1 7173 7621 -92 1504 177 56 94 chr12 137804572 137805040 -5981415 + LTR7 LTR ERV1 1 450 0 14150 136 125 92 chr12 137805068 137808229 -5978226 - MER51-int LTR ERV1 -4551 3265 1 1047 91 84 0 chr12 137808254 137808408 -5978047 + MER51B LTR ERV1 174 340 -37 * 1151 99 49 0 chr12 137808405 137808567 -5977888 - MER51B LTR ERV1 -207 170 1 681 217 44 71 chr12 137808567 137808747 -5977708 + LTR8A LTR ERV1 554 727 0 217 154 0 26 chr12 137809054 137809093 -5977362 + A-rich Low_complexity Low_complexity 2 39 0 216 0 0 0 chr12 137809349 137809373 -5977082 + (T)n Simple_repeat Simple_repeat 1 24 0 543 292 151 25 chr12 137809395 137809792 -5976663 + MLT1K LTR MaLR 82 528 -60 253 310 55 69 chr12 137810730 137810875 -5975580 + MER5B DNA MER1_type 2 144 -34 416 269 86 38 chr12 137811225 137811411 -5975044 + L2 LINE L2 2915 3109 -204 288 0 0 0 chr12 137811439 137811471 -5974984 + (TG)n Simple_repeat Simple_repeat 1 32 0 407 280 93 83 chr12 137811508 137811741 -5974714 - L2 LINE L2 -72 3241 3001 2187 96 10 13 chr12 137811741 137812042 -5974413 - AluSq SINE Alu -13 300 1 407 280 93 83 chr12 137812042 137812240 -5974215 - L2 LINE L2 -312 3001 2806 634 14 0 0 chr12 137812270 137812342 -5974113 + AluYa5/8 SINE Alu 226 297 -14 251 319 0 0 chr12 137812364 137812436 -5974019 + MER2 DNA MER2_type 6 77 -268 692 248 112 61 chr12 137812512 137812637 -5973818 - L2 LINE L2 -519 2795 2678 2794 192 20 21 chr12 137812637 137813148 -5973307 + MLT2B2 LTR ERVL 3 512 -3 692 248 112 61 chr12 137813148 137813397 -5973058 - L2 LINE L2 -636 2678 2402 255 344 84 68 chr12 137813871 137813939 -5972516 + L2 LINE L2 2524 2589 -725 2578 105 129 5 chr12 137813939 137814320 -5972135 - MSTA LTR MaLR 0 428 1 255 344 84 68 chr12 137814320 137814620 -5971835 + L2 LINE L2 2589 2898 -416 181 304 18 0 chr12 137815408 137815464 -5970991 - L2 LINE L2 -77 3236 3180 459 0 0 0 chr12 137815483 137815534 -5970921 + (TA)n Simple_repeat Simple_repeat 2 52 0 1723 178 3 7 chr12 137815535 137815822 -5970633 - AluSx SINE Alu -26 286 1 232 255 21 0 chr12 137816022 137816069 -5970386 + AluJ/monomer SINE Alu 1 48 -255 643 265 53 6 chr12 137816208 137816378 -5970077 - LTR28 LTR ERV1 -842 178 1 3272 138 9 52 chr12 137817215 137817794 -5968661 + LTR8A LTR ERV1 1 554 -173 2378 122 65 0 chr12 137817797 137818151 -5968304 - MER51B LTR ERV1 0 377 1 9437 134 65 26 chr12 137818152 137818956 -5967499 - MER51B-int LTR ERV1 0 7816 7045 4076 63 22 10 chr12 137818956 137819461 -5966994 - LTR10D LTR ERV1 -2 511 1 9437 134 65 26 chr12 137819461 137820596 -5965859 - MER51B-int LTR ERV1 -771 7045 5620 256 161 172 86 chr12 137820586 137820656 -5965799 - MER51B-int LTR ERV1 -2188 5349 5268 * 8449 51 1 1 chr12 137820656 137821625 -5964830 - LTR5 LTR ERVK 0 969 1 256 161 172 86 chr12 137821625 137821647 -5964808 - MER51B-int LTR ERV1 -2269 5268 5249 * 1656 249 105 72 chr12 137821640 137822069 -5964386 - MER61-int LTR ERV1 -2567 2650 2208 * 1825 205 56 25 chr12 137822046 137822512 -5963943 - MER61-int LTR ERV1 -3242 2809 1518 1546 174 55 98 chr12 137822512 137822982 -5963473 + LTR7 LTR ERV1 1 450 0 3626 214 27 49 chr12 137822982 137825143 -5961312 + HERVH LTR ERV1 1 2095 -4551 215 313 159 13 chr12 137825558 137825791 -5960664 - L2 LINE L2 -423 2891 2625 1429 229 89 54 chr12 137825795 137826279 -5960176 - MLT1D LTR MaLR -2 503 3 771 316 89 29 chr12 137826607 137827021 -5959434 - MLT1K LTR MaLR -148 440 2 183 242 0 0 chr12 137827899 137827961 -5958494 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 982 187 19 14 chr12 137827985 137828194 -5958261 + Tigger2 DNA MER2_type 1 210 -2508 835 194 19 19 chr12 137828193 137828348 -5958107 + Tigger2 DNA MER2_type 2564 2718 0 * 539 289 59 53 chr12 137828635 137829120 -5957335 + MLT1G LTR MaLR 35 590 0 678 302 30 10 chr12 137829686 137829888 -5956567 + MIR SINE MIR 36 241 -21 198 321 115 12 chr12 137829971 137830136 -5956319 - L3 LINE CR1 -7 1570 1389 380 368 63 19 chr12 137830137 137830501 -5955954 - L1ME LINE L1 -461 5660 5281 601 250 81 0 chr12 137831337 137831497 -5954958 + MLT1E2 LTR MaLR 454 626 0 2005 202 47 14 chr12 137831687 137832132 -5954323 + L1MC3 LINE L1 6694 7153 -632 222 255 59 29 chr12 137832346 137832448 -5954007 - MIR SINE MIR -92 170 66 266 215 15 0 chr12 137832901 137832966 -5953489 - LTR52 LTR ERVL -355 66 1 208 269 0 0 chr12 137833171 137833223 -5953232 + MIR SINE MIR 141 192 -70 381 296 8 32 chr12 137833500 137833625 -5952830 - L2 LINE L2 -36 3277 3156 1347 199 72 105 chr12 137833630 137834087 -5952368 - MLT1D LTR MaLR -45 460 19 2242 153 14 70 chr12 137834229 137834460 -5951995 - MLT1B LTR MaLR 0 390 191 1804 155 26 16 chr12 137834460 137834769 -5951686 - AluSx SINE Alu 0 312 1 2242 153 14 70 chr12 137834769 137834950 -5951505 - MLT1B LTR MaLR -199 191 1 282 305 53 8 chr12 137835437 137835568 -5950887 + L2 LINE L2 3136 3272 0 2254 108 0 0 chr12 137837061 137837356 -5949099 + AluSc SINE Alu 2 296 -13 243 275 0 14 chr12 137837932 137838001 -5948454 - MLT1J2 LTR MaLR -14 436 369 1181 209 92 21 chr12 137838553 137838879 -5947576 - L1MC3 LINE L1 -9 7776 7428 1014 146 0 0 chr12 137838872 137839037 -5947418 - L1P LINE L1 -1359 4787 4623 * 3928 81 0 6 chr12 137839037 137839542 -5946913 + L1PA13 LINE L1 5661 6163 0 4607 223 76 17 chr12 137839563 137840808 -5945647 - L1MC3 LINE L1 -354 7431 6113 932 239 43 22 chr12 137840803 137841148 -5945307 - L1MCa LINE L1 -3735 2691 2365 * 27029 135 13 20 chr12 137841194 137846422 -5940033 - L1PA8A LINE L1 0 6446 1219 234 62 0 0 chr12 137846422 137846454 -5940001 + (TTG)n Simple_repeat Simple_repeat 2 33 0 27029 135 13 20 chr12 137846454 137847665 -5938790 - L1PA8A LINE L1 -5227 1219 1 898 214 116 13 chr12 137847665 137847953 -5938502 - L1MCa LINE L1 -4105 2321 2043 229 203 0 17 chr12 137847990 137848049 -5938406 - L1MCa LINE L1 -4520 1906 1849 605 284 34 15 chr12 137848618 137848822 -5937633 + MLT1I LTR MaLR 1 208 -201 300 313 118 43 chr12 137848922 137849133 -5937322 + L2 LINE L2 3061 3287 -26 246 32 0 0 chr12 137849395 137849426 -5937029 + (TC)n Simple_repeat Simple_repeat 2 32 0 264 127 0 0 chr12 137849426 137849481 -5936974 + (TA)n Simple_repeat Simple_repeat 2 56 0 1528 150 15 100 chr12 137850800 137850934 -5935521 + AluJo SINE Alu 1 145 -167 375 23 0 0 chr12 137850934 137850978 -5935477 + (TA)n Simple_repeat Simple_repeat 1 44 0 1528 150 15 100 chr12 137850978 137851183 -5935272 + AluJo SINE Alu 145 311 -1 338 306 61 41 chr12 137851360 137851556 -5934899 + L2 LINE L2 1463 1662 -1652 1126 233 127 41 chr12 137851559 137852091 -5934364 - LTR34 LTR ERV1 -7 865 109 488 165 19 19 chr12 137852123 137852226 -5934229 - MER4A LTR ERV1 -561 103 1 490 286 85 85 chr12 137852257 137852635 -5933820 + MER57A LTR ERV1 16 393 -10 21 36 0 0 chr12 137852952 137852980 -5933475 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 137854093 137854115 -5932340 + AT_rich Low_complexity Low_complexity 1 22 0 567 320 138 34 chr12 137854390 137854715 -5931740 + LTR33 LTR ERVL 43 401 -120 3128 139 79 14 chr12 137855253 137855748 -5930707 - MER1A DNA MER1_type 0 527 1 185 62 0 31 chr12 137857892 137857924 -5928531 + (TA)n Simple_repeat Simple_repeat 1 31 0 315 113 0 0 chr12 137858689 137858742 -5927713 + (CA)n Simple_repeat Simple_repeat 2 54 0 420 313 82 29 chr12 137858863 137859071 -5927384 + MIR SINE MIR 43 261 -1 328 269 18 84 chr12 137859115 137859282 -5927173 - L1ME3 LINE L1 -2 6160 6005 280 285 89 58 chr12 137859338 137859664 -5926791 - L1ME3 LINE L1 -215 5951 5616 421 329 76 4 chr12 137861558 137861783 -5924672 + MIR SINE MIR 2 242 -20 2315 107 3 0 chr12 137862300 137862609 -5923846 + AluSg SINE Alu 1 310 0 351 291 8 16 chr12 137862717 137862844 -5923611 - LTR16C LTR ERVL -189 302 177 277 202 83 24 chr12 137863297 137863381 -5923074 - MER53 DNA DNA 0 189 101 1850 98 4 8 chr12 137863869 137864125 -5922330 + AluSp SINE Alu 48 302 -11 23 33 0 0 chr12 137864490 137864520 -5921935 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr12 137864546 137864578 -5921877 + AT_rich Low_complexity Low_complexity 1 32 0 1686 150 0 55 chr12 137864579 137864736 -5921719 - AluJo SINE Alu -22 290 157 2123 120 0 13 chr12 137864736 137865036 -5921419 - AluSc SINE Alu -13 296 1 1686 150 0 55 chr12 137865036 137865185 -5921270 - AluJo SINE Alu -155 157 1 1711 181 17 0 chr12 137865190 137865489 -5920966 - L1MC1 LINE L1 -37 6296 5993 371 277 72 36 chr12 137865986 137866152 -5920303 - MIR SINE MIR -48 214 43 2356 104 0 0 chr12 137866408 137866716 -5919739 - AluSp SINE Alu -5 308 1 2095 169 42 21 chr12 137867023 137867554 -5918901 - MLT2A2 LTR ERVL 0 554 3 1986 92 8 0 chr12 137868375 137868636 -5917819 - AluSx SINE Alu -32 280 18 27 29 0 0 chr12 137868848 137868882 -5917573 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr12 137868982 137869009 -5917446 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr12 137869090 137869139 -5917316 + AT_rich Low_complexity Low_complexity 1 49 0 2591 239 88 111 chr12 137869386 137869860 -5916595 + L1M4 LINE L1 2555 3038 -3108 1847 169 3 16 chr12 137869860 137870168 -5916287 - AluJo SINE Alu 0 312 9 2591 239 88 111 chr12 137870168 137870646 -5915809 + L1M4 LINE L1 3038 3525 -2621 2136 124 3 0 chr12 137870646 137870944 -5915511 + AluSx SINE Alu 1 299 -13 2591 239 88 111 chr12 137870944 137871944 -5914511 + L1M4 LINE L1 3525 4465 -1681 1647 218 67 29 chr12 137872127 137872573 -5913882 - MLT1C LTR MaLR -4 463 1 267 314 17 64 chr12 137872632 137872804 -5913651 + MIR SINE MIR 28 191 -71 370 338 59 30 chr12 137873196 137873652 -5912803 + L2 LINE L2 2743 3208 -64 261 248 20 20 chr12 137873895 137873996 -5912459 + (TA)n Simple_repeat Simple_repeat 1 101 0 737 296 92 46 chr12 137874953 137875430 -5911025 - MLT1L LTR MaLR -10 605 107 198 315 77 31 chr12 137878175 137878305 -5908150 + MIR3 SINE MIR 48 183 -25 1043 213 40 0 chr12 137878350 137878552 -5907903 - MER20 DNA MER1_type -2 217 8 1806 250 62 18 chr12 137878670 137879237 -5907218 + MER76 LTR ERV 56 647 -41 235 216 20 0 chr12 137879299 137879350 -5907105 + CT-rich Low_complexity Low_complexity 1 52 0 1922 214 34 14 chr12 137880034 137880529 -5905926 + L1 LINE L1 3178 3682 -2464 5715 134 23 4 chr12 137880531 137881458 -5904997 + L1PA16 LINE L1 5222 6166 0 235 275 175 21 chr12 137881467 137881511 -5904944 + Charlie8 DNA MER1_type 61 97 -2320 2232 112 0 0 chr12 137881511 137881807 -5904648 + AluY SINE Alu 1 296 -15 235 275 175 21 chr12 137881807 137881951 -5904504 + Charlie8 DNA MER1_type 97 278 -2139 386 304 196 8 chr12 137882511 137883039 -5903416 + L2 LINE L2 2457 3075 -238 2077 129 7 10 chr12 137883166 137883493 -5902962 - AluSx SINE Alu 0 312 1 285 296 122 0 chr12 137883558 137883673 -5902782 + L2 LINE L2 3185 3313 0 869 198 31 19 chr12 137883710 137883872 -5902583 - AluJo SINE Alu -1 301 138 2435 144 28 3 chr12 137883877 137884232 -5902223 - THE1B LTR MaLR 0 364 1 878 160 15 0 chr12 137884236 137884367 -5902088 - AluJo SINE Alu -169 133 1 447 253 102 86 chr12 137884538 137884842 -5901613 + MLT1I LTR MaLR 98 406 -3 204 97 0 0 chr12 137885482 137885513 -5900942 + (TG)n Simple_repeat Simple_repeat 2 32 0 512 204 62 18 chr12 137885812 137885925 -5900530 - AluSg/x SINE Alu -7 302 185 27 62 0 0 chr12 137886626 137886674 -5899781 + AT_rich Low_complexity Low_complexity 1 48 0 2376 104 3 0 chr12 137886765 137887074 -5899381 - AluSp SINE Alu -3 310 1 29 28 0 0 chr12 137887592 137887628 -5898827 + AT_rich Low_complexity Low_complexity 1 36 0 503 303 84 0 chr12 137887723 137887878 -5898577 + MLT1J LTR MaLR 32 199 -312 2196 145 124 21 chr12 137888524 137888910 -5897545 - MSTA LTR MaLR 0 428 3 1995 98 0 0 chr12 137889972 137890227 -5896228 - AluSg SINE Alu -7 303 49 2764 193 28 56 chr12 137890555 137891124 -5895331 - MLT2B3 LTR ERVL 0 554 2 258 337 61 10 chr12 137891512 137891610 -5894845 + MIR SINE MIR 43 145 -117 646 324 23 0 chr12 137891774 137891993 -5894462 - MIR SINE MIR -21 241 18 251 253 38 13 chr12 137892259 137892338 -5894117 + MLT1K LTR MaLR 463 543 -45 25 31 0 0 chr12 137892535 137892567 -5893888 + AT_rich Low_complexity Low_complexity 1 32 0 1546 285 39 16 chr12 137892620 137893382 -5893073 - L1M4 LINE L1 -2962 3184 2405 * 3421 220 71 12 chr12 137893377 137893535 -5892920 + L1MB8 LINE L1 4869 5016 -1162 2256 112 3 0 chr12 137893535 137893839 -5892616 - AluSp SINE Alu -8 305 1 3421 220 71 12 chr12 137893839 137894903 -5891552 + L1MB8 LINE L1 5016 6162 -16 442 254 72 22 chr12 137894920 137895058 -5891397 + LTR16C LTR ERVL 344 488 -3 21 0 0 0 chr12 137895321 137895342 -5891113 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr12 137895857 137895900 -5890555 + (CA)n Simple_repeat Simple_repeat 1 43 0 2083 137 67 20 chr12 137897039 137897397 -5889058 - THE1C LTR MaLR 0 375 1 1101 279 34 34 chr12 137897595 137897904 -5888551 - MLT1D LTR MaLR -77 428 117 1878 125 3 30 chr12 137897904 137898200 -5888255 - AluSx SINE Alu -9 303 16 1101 279 34 34 chr12 137898200 137898298 -5888157 - MLT1D LTR MaLR -387 118 21 403 296 96 18 chr12 137898406 137898626 -5887829 + LTR16C LTR ERVL 255 491 0 303 261 117 36 chr12 137900279 137900390 -5886065 - L2 LINE L2 -2 3311 3192 1687 72 103 23 chr12 137900852 137901115 -5885340 - L1MA5A LINE L1 -5 6292 6009 231 291 0 0 chr12 137902412 137902467 -5883988 + GA-rich Low_complexity Low_complexity 1 55 0 354 231 56 9 chr12 137902754 137902862 -5883593 - L1MA9 LINE L1 -46 6266 6154 4315 71 186 0 chr12 137902947 137903526 -5882929 - LTR12 LTR ERV1 -1 687 1 337 294 34 25 chr12 137904222 137904341 -5882114 + HAL1 LINE L1 203 322 -2185 1063 272 46 48 chr12 137904703 137905243 -5881212 + LTR55 LTR ERV 9 547 -1 223 386 41 35 chr12 137906116 137906261 -5880194 + L2 LINE L2 3125 3270 -2 459 254 36 29 chr12 137906325 137906463 -5879992 - MER91C DNA MER1_type -1 139 1 3872 173 62 0 chr12 137907054 137907766 -5878689 - L1PB4 LINE L1 0 6156 5401 353 359 0 0 chr12 137907986 137908156 -5878299 + (CA)n Simple_repeat Simple_repeat 2 171 0 216 67 0 0 chr12 137909763 137909793 -5876662 + (CA)n Simple_repeat Simple_repeat 1 30 0 251 260 14 14 chr12 137909998 137910071 -5876384 + (CA)n Simple_repeat Simple_repeat 2 74 0 24 67 0 0 chr12 137910420 137910465 -5875990 + AT_rich Low_complexity Low_complexity 1 45 0 2372 113 0 0 chr12 137910588 137910897 -5875558 - AluSc SINE Alu 0 309 1 604 227 48 142 chr12 137911006 137911242 -5875213 + MLT1L LTR MaLR 108 403 -203 261 348 98 25 chr12 137912462 137912698 -5873757 + MLT1K LTR MaLR 224 476 -112 269 132 0 19 chr12 137912900 137912953 -5873502 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 264 294 116 0 chr12 137913681 137913827 -5872628 - MER102a DNA MER1_type 0 330 168 1074 209 54 74 chr12 137913850 137914336 -5872119 - MLT1E2 LTR MaLR 0 505 51 243 269 111 19 chr12 137914622 137914730 -5871725 - MLT1J2 LTR MaLR -46 404 287 222 118 0 0 chr12 137914734 137914768 -5871687 + (TA)n Simple_repeat Simple_repeat 1 34 0 209 261 15 31 chr12 137914788 137914853 -5871602 + L2 LINE L2 3229 3292 -21 254 224 61 51 chr12 137914950 137915048 -5871407 - MER102a DNA MER1_type -166 164 66 577 209 13 44 chr12 137915515 137915555 -5870900 + MER68 LTR ERV1 1 41 -521 4812 125 0 48 chr12 137915555 137916281 -5870174 + LTR8 LTR ERV1 1 691 0 577 209 13 44 chr12 137916281 137916398 -5870057 + MER68 LTR ERV1 41 153 -409 595 209 17 0 chr12 137916411 137916526 -5869929 + LTR1B LTR ERV1 1 117 -709 450 200 0 0 chr12 137916649 137916729 -5869726 + MER68 LTR ERV1 178 257 -305 1590 194 90 94 chr12 137916732 137917413 -5869042 + LTR1B LTR ERV1 116 981 -39 1403 199 28 111 chr12 137917496 137917894 -5868561 + MER68 LTR ERV1 178 542 -20 956 294 45 34 chr12 137918016 137918461 -5867994 + MLT1J2 LTR MaLR 1 450 0 329 372 98 5 chr12 137919366 137919581 -5866874 + MIR SINE MIR 12 246 -16 622 91 0 0 chr12 137920247 137920324 -5866131 - AluSc SINE Alu -222 87 11 1583 82 0 43 chr12 137920324 137920555 -5865900 + AluSg/x SINE Alu 92 312 0 448 333 52 0 chr12 137920909 137921140 -5865315 + LTR16C LTR ERVL 99 341 -150 800 182 3 0 chr12 137921300 137921928 -5864527 + (TG)n Simple_repeat Simple_repeat 1 630 0 181 352 74 0 chr12 137922287 137922395 -5864060 - MIR SINE MIR -101 161 46 279 297 0 0 chr12 137922826 137922890 -5863565 - MER91A DNA MER1_type -46 150 87 298 254 0 0 chr12 137924577 137924640 -5861815 - L3 LINE CR1 -123 1454 1392 24 0 0 0 chr12 137924880 137924904 -5861551 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 137925355 137925379 -5861076 + (TG)n Simple_repeat Simple_repeat 2 25 0 369 270 69 17 chr12 137925520 137925694 -5860761 - MIR SINE MIR -8 254 72 347 280 143 11 chr12 137925749 137925938 -5860517 - MER102a DNA MER1_type 0 330 117 193 150 0 33 chr12 137925988 137926048 -5860407 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 256 333 19 0 chr12 137926134 137926239 -5860216 + L2 LINE L2 3166 3272 0 233 185 92 0 chr12 137926936 137927001 -5859454 - Charlie8 DNA MER1_type -991 1426 1356 352 318 40 6 chr12 137927326 137927499 -5858956 - Charlie8 DNA MER1_type -2171 246 68 340 149 117 11 chr12 137928099 137928193 -5858262 + AluSp SINE Alu 15 118 -185 269 132 0 19 chr12 137929026 137929079 -5857376 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 264 294 116 0 chr12 137929807 137929953 -5856502 - MER102b DNA MER1_type 0 341 179 1074 209 54 74 chr12 137929976 137930462 -5855993 - MLT1E2 LTR MaLR 0 505 51 254 259 111 19 chr12 137930748 137930856 -5855599 - MLT1J2 LTR MaLR -46 404 287 222 118 0 0 chr12 137930860 137930894 -5855561 + (TA)n Simple_repeat Simple_repeat 1 34 0 209 261 15 31 chr12 137930913 137930978 -5855477 + L2 LINE L2 3229 3292 -21 254 224 61 51 chr12 137931075 137931173 -5855282 - MER102b DNA MER1_type -177 164 66 577 209 13 44 chr12 137931640 137931680 -5854775 + MER68 LTR ERV1 1 41 -521 4761 128 0 48 chr12 137931680 137932406 -5854049 + LTR8 LTR ERV1 1 691 0 577 209 13 44 chr12 137932406 137932523 -5853932 + MER68 LTR ERV1 41 153 -409 595 209 17 0 chr12 137932536 137932651 -5853804 + LTR1B LTR ERV1 1 117 -709 450 200 0 0 chr12 137932774 137932854 -5853601 + MER68 LTR ERV1 178 257 -305 1617 194 88 93 chr12 137932857 137933539 -5852916 + LTR1B LTR ERV1 116 981 -39 1403 199 28 111 chr12 137933622 137934020 -5852435 + MER68 LTR ERV1 178 542 -20 956 294 45 34 chr12 137934142 137934587 -5851868 + MLT1J2 LTR MaLR 1 450 0 329 372 98 5 chr12 137935492 137935707 -5850748 + MIR SINE MIR 12 246 -16 622 91 0 0 chr12 137936373 137936450 -5850005 - AluSc SINE Alu -222 87 11 1583 82 0 43 chr12 137936450 137936681 -5849774 + AluSg/x SINE Alu 92 312 0 448 333 52 0 chr12 137937035 137937266 -5849189 + LTR16C LTR ERVL 99 341 -150 800 182 3 0 chr12 137937426 137938054 -5848401 + (TG)n Simple_repeat Simple_repeat 1 630 0 181 352 74 0 chr12 137938413 137938521 -5847934 - MIR SINE MIR -101 161 46 279 297 0 0 chr12 137938952 137939016 -5847439 - MER91A DNA MER1_type -46 150 87 298 254 0 0 chr12 137940703 137940766 -5845689 - L3 LINE CR1 -123 1454 1392 24 0 0 0 chr12 137941006 137941030 -5845425 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 137941480 137941504 -5844951 + (TG)n Simple_repeat Simple_repeat 2 25 0 369 270 69 17 chr12 137941645 137941819 -5844636 - MIR SINE MIR -8 254 72 440 293 122 9 chr12 137941874 137942096 -5844359 - MER102b DNA MER1_type 0 341 95 220 143 0 32 chr12 137942110 137942173 -5844282 + (GAAAA)n Simple_repeat Simple_repeat 5 65 0 256 333 19 0 chr12 137942259 137942364 -5844091 + L2 LINE L2 3166 3272 0 233 185 92 0 chr12 137943061 137943126 -5843329 - Charlie8 DNA MER1_type -1002 1415 1345 352 318 40 6 chr12 137943451 137943624 -5842831 - Charlie8 DNA MER1_type -2182 235 57 1781 135 10 20 chr12 137944223 137944347 -5842108 + AluSq SINE Alu 7 131 -182 180 0 0 0 chr12 137944347 137944367 -5842088 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1781 135 10 20 chr12 137944367 137944539 -5841916 + AluSq SINE Alu 131 300 -13 1458 88 15 24 chr12 137944878 137945083 -5841372 + L1PA10 LINE L1 5950 6152 -16 447 294 100 27 chr12 137945142 137945441 -5841014 - L2 LINE L2 -184 3129 2809 210 222 37 19 chr12 137945518 137945572 -5840883 - L2 LINE L2 -77 3236 3182 402 278 53 0 chr12 137945969 137946102 -5840353 - MIR SINE MIR -10 252 113 1579 256 108 19 chr12 137947062 137947682 -5838773 + L1MD3 LINE L1 2404 3078 -3068 2329 266 49 64 chr12 137947706 137949036 -5837419 + L1MD3 LINE L1 3191 4500 -1646 246 180 0 20 chr12 137949091 137949141 -5837314 + MLT1K LTR MaLR 194 242 -346 5096 261 100 45 chr12 137949227 137950254 -5836201 + L1MD3 LINE L1 4518 5486 -2509 1856 179 55 25 chr12 137950254 137950618 -5835837 + THE1C LTR MaLR 1 375 0 5096 261 100 45 chr12 137950618 137951604 -5834851 + L1MD3 LINE L1 5486 6416 -1579 461 26 26 26 chr12 137951604 137951681 -5834774 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 5096 261 100 45 chr12 137951681 137952930 -5833525 + L1MD3 LINE L1 6416 7961 -34 565 241 55 89 chr12 137952961 137953198 -5833257 - LTR33A LTR ERVL -294 229 1 1392 206 91 18 chr12 137953659 137953999 -5832456 + MLT1A1 LTR MaLR 1 365 0 2273 187 5 10 chr12 137954106 137954497 -5831958 + MLT1B LTR MaLR 1 389 -1 2764 159 23 13 chr12 137954937 137955410 -5831045 + LTR45B LTR ERV1 12 489 0 1884 184 43 23 chr12 137956943 137957383 -5829072 - L1MB5 LINE L1 -1 6173 5725 664 190 0 9 chr12 137957383 137957499 -5828956 - AluJo SINE Alu -172 140 26 199 260 0 0 chr12 137957926 137957976 -5828479 + L2 LINE L2 3264 3313 0 489 300 21 99 chr12 137958434 137958767 -5827688 - MLT1L LTR MaLR -187 428 122 443 267 142 30 chr12 137958923 137959155 -5827300 - MER113 DNA MER1_type? -74 447 190 252 291 48 29 chr12 137959795 137959898 -5826557 - MER113 DNA MER1_type? 0 521 417 1061 198 9 22 chr12 137959903 137960001 -5826454 - Tigger1 DNA MER2_type 0 2418 2320 2490 126 33 3 chr12 137960001 137960365 -5826090 - THE1C LTR MaLR 0 375 1 1061 198 9 22 chr12 137960365 137960488 -5825967 - Tigger1 DNA MER2_type -98 2320 2200 637 180 86 0 chr12 137960484 137960612 -5825843 - Tigger1 DNA MER2_type -2279 139 1 * 2187 134 0 0 chr12 137960858 137961156 -5825299 - AluSx SINE Alu -14 298 1 180 317 178 0 chr12 137963541 137963642 -5822813 + MIR SINE MIR 22 140 -68 1550 232 26 42 chr12 137963998 137964455 -5822000 + LTR40c LTR ERVL 11 460 -5 1495 176 41 8 chr12 137964536 137964803 -5821652 - AluJb SINE Alu -28 284 9 532 278 229 29 chr12 137965015 137965400 -5821055 + L2 LINE L2 2851 3312 -1 660 182 147 18 chr12 137965520 137965690 -5820765 - MER21A LTR ERV1 0 931 740 2188 180 46 10 chr12 137965774 137966168 -5820287 - MER21A LTR ERV1 -145 786 379 1043 234 20 20 chr12 137966176 137966428 -5820027 - MER21A LTR ERV1 -667 264 13 32 0 0 0 chr12 137966444 137966476 -5819979 + AT_rich Low_complexity Low_complexity 1 32 0 325 152 28 34 chr12 137966482 137966660 -5819795 + (TA)n Simple_repeat Simple_repeat 2 178 0 1388 128 55 0 chr12 137966712 137966930 -5819525 - MER30 DNA MER1_type 0 230 1 328 182 52 19 chr12 137967008 137967162 -5819293 + (TA)n Simple_repeat Simple_repeat 1 159 0 1265 315 147 31 chr12 137967534 137968781 -5817674 - L2 LINE L2 -14 3299 1899 247 274 116 42 chr12 137968824 137968919 -5817536 - MIR SINE MIR -87 121 20 923 156 279 13 chr12 137968962 137969199 -5817256 + AluSg1 SINE Alu 1 300 -9 1132 294 25 23 chr12 137970409 137970851 -5815604 + L1ME3A LINE L1 5727 6169 -1 357 24 0 0 chr12 137970868 137970910 -5815545 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 122 0 0 chr12 137971065 137971114 -5815341 + LTR66 LTR ERVL 398 446 -164 443 241 123 21 chr12 137971483 137971670 -5814785 + MLT1H LTR MaLR 39 244 -305 212 184 41 20 chr12 137971671 137971720 -5814735 + A-rich Low_complexity Low_complexity 1 50 0 256 345 18 9 chr12 137972152 137972265 -5814190 + LTR33 LTR ERVL 331 444 -77 251 154 23 54 chr12 137972474 137972604 -5813851 + (TA)n Simple_repeat Simple_repeat 1 126 0 21 36 0 0 chr12 137972660 137972688 -5813767 + AT_rich Low_complexity Low_complexity 1 28 0 814 189 97 5 chr12 137973391 137973587 -5812868 + MER20 DNA MER1_type 3 216 -3 254 378 41 6 chr12 137974781 137974953 -5811502 - MIR SINE MIR -68 194 17 1824 111 38 28 chr12 137975052 137975340 -5811115 - AluSc SINE Alu -18 291 1 205 161 0 0 chr12 137975417 137975448 -5811007 + (TG)n Simple_repeat Simple_repeat 2 32 0 254 364 9 0 chr12 137975566 137975676 -5810779 + L2 LINE L2 3157 3267 -5 450 325 10 21 chr12 137976751 137976962 -5809493 + MIR SINE MIR 15 219 -43 692 224 51 25 chr12 137977208 137977404 -5809051 - MLT1J1 LTR MaLR -241 205 5 210 192 0 0 chr12 137977501 137977553 -5808902 + (TA)n Simple_repeat Simple_repeat 2 53 0 226 158 0 35 chr12 137977578 137977635 -5808820 + (CA)n Simple_repeat Simple_repeat 2 56 0 1956 152 19 104 chr12 137977635 137977834 -5808621 + Tigger2a DNA MER2_type 1 215 -2493 1836 100 26 7 chr12 137977834 137978105 -5808350 + AluSc SINE Alu 1 276 -33 204 40 0 0 chr12 137978107 137978132 -5808323 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1956 152 19 104 chr12 137978132 137978212 -5808243 + Tigger2a DNA MER2_type 216 301 -2407 1730 166 14 0 chr12 137978212 137978496 -5807959 + AluSx SINE Alu 1 288 -24 1956 152 19 104 chr12 137978496 137978685 -5807770 + Tigger2a DNA MER2_type 301 433 -1 261 0 0 0 chr12 137978699 137978728 -5807727 + (CA)n Simple_repeat Simple_repeat 2 30 0 239 340 43 55 chr12 137978729 137978982 -5807473 - L2 LINE L2 -198 3074 2825 261 139 0 0 chr12 137980191 137980234 -5806221 + (CA)n Simple_repeat Simple_repeat 2 44 0 1636 156 0 42 chr12 137981051 137981358 -5805097 + AluJb SINE Alu 1 294 -18 655 276 23 37 chr12 137982278 137982492 -5803963 + MIR SINE MIR 34 244 -18 183 181 42 0 chr12 137982509 137982581 -5803874 + (TTA)n Simple_repeat Simple_repeat 2 76 0 488 179 0 0 chr12 137982652 137982736 -5803719 - Charlie1 DNA MER1_type -1 2760 2677 358 314 10 10 chr12 137982917 137983019 -5803436 + MIR SINE MIR 23 124 -84 240 295 47 54 chr12 137983181 137983330 -5803125 + MIR3 SINE MIR 36 183 -25 285 299 13 78 chr12 137983527 137983680 -5802775 + MIR SINE MIR 11 152 -57 491 282 9 77 chr12 137983742 137983965 -5802490 - MIR SINE MIR -51 211 4 675 99 0 0 chr12 137984919 137985020 -5801435 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 484 237 45 68 chr12 137985703 137985919 -5800536 - LTR45 LTR ERV1 0 602 365 233 192 19 19 chr12 137985962 137986014 -5800441 - MER72 LTR ERV1 -261 461 410 216 269 58 92 chr12 137986481 137986673 -5799782 - MIR3 SINE MIR -72 190 5 220 336 122 15 chr12 137988410 137988541 -5797914 + MIR3 SINE MIR 5 149 -59 1613 150 10 41 chr12 137988609 137988903 -5797552 - AluJb SINE Alu -27 285 1 432 97 0 0 chr12 137989246 137989308 -5797147 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1863 164 0 0 chr12 137989308 137989619 -5796836 - AluSx SINE Alu -1 311 1 390 252 117 19 chr12 137989619 137989825 -5796630 - MER113 DNA MER1_type? -203 318 93 496 266 93 66 chr12 137990590 137990956 -5795499 + MLT1L LTR MaLR 203 484 -27 2261 107 0 0 chr12 137991152 137991460 -5794995 - AluSx SINE Alu -4 308 1 2148 110 0 0 chr12 137993638 137993930 -5792525 + AluSx SINE Alu 1 292 -20 249 49 111 0 chr12 137994066 137994147 -5792308 + (TA)n Simple_repeat Simple_repeat 2 91 0 352 163 21 199 chr12 137994151 137994292 -5792163 + L1MC4 LINE L1 6589 6704 -1338 306 243 66 59 chr12 137994641 137994777 -5791678 - L1MCa LINE L1 -4362 2178 2042 * 364 303 22 0 chr12 137994772 137994861 -5791594 + L1MC4 LINE L1 6613 6703 -1339 * 414 250 0 43 chr12 137994848 137994940 -5791515 + L1MC4 LINE L1 6613 6700 -1342 304 226 16 0 chr12 137994886 137994948 -5791507 - L1MCa LINE L1 -4362 2178 2116 * 1554 237 23 0 chr12 137995124 137995424 -5791031 + MLT2B1 LTR ERVL 13 319 -201 234 291 27 27 chr12 137995425 137995535 -5790920 - L1MC4 LINE L1 -1319 6723 6614 321 263 30 0 chr12 137997359 137997466 -5788989 - MIR SINE MIR -37 225 116 312 27 0 0 chr12 137997803 137997840 -5788615 + (CA)n Simple_repeat Simple_repeat 1 37 0 694 304 37 52 chr12 137998115 137998497 -5787958 + L2 LINE L2 2600 2975 -339 484 281 104 3 chr12 137998532 137998735 -5787720 - MIR SINE MIR -1 261 44 305 336 102 29 chr12 137998811 137999126 -5787329 - L2 LINE L2 -1252 2062 1725 1785 98 0 0 chr12 137999435 137999680 -5786775 - AluSg/x SINE Alu -2 310 66 913 255 52 82 chr12 137999708 138000171 -5786284 + L1ME2 LINE L1 5706 6154 -10 512 250 220 10 chr12 138000574 138000774 -5785681 - MLT1G1 LTR MaLR -122 473 232 551 309 75 10 chr12 138001321 138001522 -5784933 - MER58A DNA MER1_type -10 214 1 241 351 65 26 chr12 138001687 138001841 -5784614 + MIR SINE MIR 26 185 -77 353 346 20 0 chr12 138002185 138002286 -5784169 - L1MCa LINE L1 -4564 1976 1874 798 233 5 10 chr12 138002291 138002484 -5783971 - AluJb SINE Alu -2 310 119 908 241 108 42 chr12 138002517 138003047 -5783408 - L1MCa LINE L1 -4704 1836 1272 620 189 27 181 chr12 138003326 138003994 -5782461 - TAR1 Satellite telomeric -1796 315 2 1514 171 29 46 chr12 138003480 138003555 -5782900 - LTR60 LTR ERV1 -3 583 508 2140 107 17 0 chr12 138003555 138003853 -5782602 - AluSx SINE Alu -9 303 1 1514 171 29 46 chr12 138003853 138004128 -5782327 - LTR60 LTR ERV1 -78 508 239 1165 227 26 4 chr12 138004139 138004412 -5782043 - LTR60 LTR ERV1 -307 279 1 228 350 35 35 chr12 138004464 138004607 -5781848 + MIR SINE MIR 56 198 -64 327 340 35 7 chr12 138005605 138005749 -5780706 + MLT1I LTR MaLR 1 148 -261 617 256 38 124 chr12 138005811 138006394 -5780061 + L2 LINE L2 2782 3307 -6 255 303 30 30 chr12 138006423 138006555 -5779900 + L1MA8 LINE L1 6120 6251 -40 24 0 0 0 chr12 138006575 138006599 -5779856 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr12 138006874 138006903 -5779552 + (TTG)n Simple_repeat Simple_repeat 2 30 0 268 295 94 13 chr12 138007571 138007724 -5778731 + MIR SINE MIR 60 230 -32 275 301 108 0 chr12 138007922 138008015 -5778440 - L2 LINE L2 -31 3241 3139 562 262 84 5 chr12 138008512 138008726 -5777729 - L2 LINE L2 -453 2861 2631 689 272 12 0 chr12 138008883 138009056 -5777399 + MIR SINE MIR 44 218 -44 294 267 40 20 chr12 138009109 138009210 -5777245 - MLT1I LTR MaLR -26 383 281 374 328 70 18 chr12 138010604 138010775 -5775680 + MIR SINE MIR 10 189 -73 372 216 80 108 chr12 138011940 138012153 -5774302 + LTR16A1 LTR ERVL 244 450 -7 436 309 166 13 chr12 138012192 138012499 -5773956 - L2 LINE L2 -4 3309 2956 21 57 0 0 chr12 138014245 138014280 -5772175 + AT_rich Low_complexity Low_complexity 1 35 0 242 172 31 0 chr12 138015671 138015735 -5770720 + (TATG)n Simple_repeat Simple_repeat 3 68 0 250 204 111 0 chr12 138015774 138015828 -5770627 + LTR48B LTR ERV1 6 65 -579 1323 214 124 51 chr12 138015849 138016261 -5770194 + MER39 LTR ERV1 265 706 -1 379 0 0 0 chr12 138016630 138016674 -5769781 + L1PA3 LINE L1 6109 6152 -3 1781 143 4 4 chr12 138016981 138017247 -5769208 + AluJb SINE Alu 1 266 -46 201 74 0 0 chr12 138017259 138017286 -5769169 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4827 260 74 22 chr12 138017504 138019310 -5767145 + L1M4 LINE L1 2658 4557 -1589 512 152 0 0 chr12 138019311 138019390 -5767065 + L1MD1 LINE L1 5858 5936 -306 1204 258 114 2 chr12 138019441 138019852 -5766603 + L1MD2 LINE L1 5900 6356 -3 225 239 0 0 chr12 138020744 138020790 -5765665 + (CA)n Simple_repeat Simple_repeat 1 46 0 1953 201 139 9 chr12 138021008 138021455 -5765000 - LTR22 LTR ERVK -4 505 1 344 319 31 25 chr12 138024098 138024258 -5762197 - MIR SINE MIR -58 204 44 197 244 24 0 chr12 138024323 138024364 -5762091 - MIR SINE MIR -58 150 109 564 84 0 0 chr12 138024480 138024551 -5761904 + U1 snRNA snRNA 1 71 -94 520 285 72 24 chr12 138024808 138025057 -5761398 - MER113 DNA MER1_type? -128 393 133 2551 91 5 108 chr12 138025181 138025587 -5760868 - THE1B LTR MaLR 0 364 1 369 231 13 90 chr12 138026326 138026482 -5759973 - L2 LINE L2 -10 3303 3160 286 293 27 40 chr12 138027121 138027271 -5759184 + L1MC4a LINE L1 5793 5940 -1868 189 0 0 0 chr12 138027290 138027311 -5759144 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 212 222 0 37 chr12 138028100 138028208 -5758247 + CT-rich Low_complexity Low_complexity 2 105 0 249 290 29 58 chr12 138028534 138028672 -5757783 + MLT1J2 LTR MaLR 258 391 -59 821 272 51 4 chr12 138028754 138028989 -5757466 - MIR SINE MIR -9 253 8 289 260 10 52 chr12 138029095 138029191 -5757264 - MIR SINE MIR -35 227 136 261 57 0 0 chr12 138029857 138029892 -5756563 + (TG)n Simple_repeat Simple_repeat 2 36 0 343 180 16 0 chr12 138030404 138030465 -5755990 - MIR SINE MIR -64 144 83 578 337 98 41 chr12 138030590 138031376 -5755079 + L2 LINE L2 2233 3078 -194 231 61 0 0 chr12 138031942 138031975 -5754480 + (CA)n Simple_repeat Simple_repeat 1 33 0 640 283 137 35 chr12 138032032 138032456 -5753999 + MLT1L LTR MaLR 149 615 0 347 275 56 35 chr12 138032735 138032877 -5753578 + L2 LINE L2 3169 3313 0 3345 166 39 2 chr12 138033902 138034438 -5752017 + MER41D LTR ERV1 1 556 -1 492 287 77 32 chr12 138034534 138034781 -5751674 - MIR SINE MIR 0 262 5 378 294 66 5 chr12 138034891 138035088 -5751367 - L1ME1 LINE L1 -6 6160 5952 246 238 90 49 chr12 138035145 138035267 -5751188 + MIR SINE MIR 21 147 -61 574 265 47 28 chr12 138035405 138035616 -5750839 - L2 LINE L2 0 3313 3099 205 167 10 39 chr12 138035848 138035950 -5750505 + (TA)n Simple_repeat Simple_repeat 2 100 0 214 229 21 0 chr12 138036412 138036460 -5749995 - MIR SINE MIR -151 111 63 233 245 157 57 chr12 138036802 138036961 -5749494 - MIR3 SINE MIR -2 206 32 403 269 85 14 chr12 138038121 138038262 -5748193 + MER117 DNA MER1_type 2 152 -45 375 206 79 56 chr12 138039526 138039652 -5746803 + MIR SINE MIR 102 230 -32 270 353 52 36 chr12 138039802 138040054 -5746401 - L2 LINE L2 -157 3115 2860 897 303 107 40 chr12 138040090 138040539 -5745916 + MLT1K LTR MaLR 90 568 -20 518 284 78 52 chr12 138041547 138041779 -5744676 + MIR SINE MIR 15 252 -10 208 279 144 29 chr12 138041950 138042054 -5744401 - L3 LINE CR1 -19 1558 1443 345 265 27 75 chr12 138042122 138042269 -5744186 - L2 LINE L2 0 3272 3133 412 252 35 17 chr12 138042811 138042926 -5743529 - MIR SINE MIR -109 153 37 489 308 72 72 chr12 138042962 138043241 -5743214 - L3 LINE CR1 -199 1378 1100 369 313 61 67 chr12 138043279 138043624 -5742831 - Charlie8 DNA MER1_type -2014 403 61 276 326 163 21 chr12 138043653 138043941 -5742514 - L3 LINE CR1 -509 1068 740 589 123 0 0 chr12 138044013 138044094 -5742361 + AluSc SINE Alu 2 82 -227 613 117 12 29 chr12 138044102 138044216 -5742239 - MER4B LTR ERV1 -286 493 223 1487 90 65 0 chr12 138044216 138044416 -5742039 + AluSc SINE Alu 89 301 -8 1871 131 59 10 chr12 138044417 138044723 -5741732 + MER4B LTR ERV1 1 321 -289 754 20 61 0 chr12 138044728 138044826 -5741629 - L1P LINE L1 -1026 5120 5017 760 83 15 128 chr12 138044881 138045014 -5741441 + FLAM_C SINE Alu 1 118 -15 1386 117 129 53 chr12 138045014 138045278 -5741177 + MER4B LTR ERV1 327 610 0 23 33 0 0 chr12 138046429 138046459 -5739996 + AT_rich Low_complexity Low_complexity 1 30 0 210 219 0 0 chr12 138047091 138047132 -5739323 + GA-rich Low_complexity Low_complexity 4 44 0 315 179 0 0 chr12 138048299 138048355 -5738100 - L1MC4 LINE L1 -1339 6703 6648 219 318 126 47 chr12 138048451 138048816 -5737639 + L2 LINE L2 2836 3229 -84 249 108 0 0 chr12 138049488 138049525 -5736930 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 4804 63 27 7 chr12 138049597 138050610 -5735845 - MER11A LTR ERVK 0 1266 1 294 29 0 0 chr12 138050694 138050729 -5735726 + (GA)n Simple_repeat Simple_repeat 2 36 0 6298 209 22 18 chr12 138051171 138053506 -5732949 + L1MC1 LINE L1 3701 6041 -292 2257 125 51 17 chr12 138053582 138053934 -5732521 - THE1B LTR MaLR 0 364 1 477 245 80 18 chr12 138054705 138054868 -5731587 + MLT1K LTR MaLR 111 283 -305 212 364 80 0 chr12 138055563 138055651 -5730804 + MIR SINE MIR 5 99 -163 899 260 39 72 chr12 138055729 138056145 -5730310 + L2 LINE L2 2912 3313 0 637 282 93 29 chr12 138056985 138057265 -5729190 + LTR52 LTR ERVL 46 343 -78 345 311 73 0 chr12 138057349 138057513 -5728942 + MER113 DNA MER1_type? 276 451 -70 220 307 18 70 chr12 138057821 138057935 -5728520 + L2 LINE L2 3206 3313 0 455 263 0 51 chr12 138058170 138058307 -5728148 - MER91B DNA MER1_type -60 130 1 815 196 65 38 chr12 138059585 138059695 -5726760 - MER58A DNA MER1_type -2231 189 71 1676 133 72 80 chr12 138059695 138059783 -5726672 - THE1C LTR MaLR -1 374 287 2486 57 7 0 chr12 138059783 138060084 -5726371 + AluY SINE Alu 1 303 -8 1676 133 72 80 chr12 138060084 138060372 -5726083 - THE1C LTR MaLR -88 287 1 815 196 65 38 chr12 138060372 138060445 -5726010 - MER58A DNA MER1_type -2349 71 1 1063 303 140 22 chr12 138060445 138061298 -5725157 + L2 LINE L2 2347 3312 -1 2317 96 0 3 chr12 138061354 138061657 -5724798 - AluSp SINE Alu -5 308 7 646 315 78 56 chr12 138061660 138062157 -5724298 + L1ME4a LINE L1 5366 5874 -247 791 267 84 25 chr12 138062890 138063328 -5723127 + L1ME4a LINE L1 5654 6117 -4 578 258 40 0 chr12 138063911 138064035 -5722420 + MER91C DNA MER1_type 12 140 0 1184 165 66 5 chr12 138064988 138065200 -5721255 + AluJo SINE Alu 68 292 -20 326 300 64 7 chr12 138065214 138065354 -5721101 - MIR SINE MIR -51 211 64 379 239 34 17 chr12 138065540 138065657 -5720798 + MIR SINE MIR 115 233 -29 185 318 32 0 chr12 138065698 138065761 -5720694 + L2 LINE L2 3206 3270 -2 241 346 93 0 chr12 138066372 138066479 -5719976 + MLT1I LTR MaLR 9 125 -284 406 243 45 18 chr12 138066584 138066695 -5719760 + MLT1I LTR MaLR 296 409 0 742 214 20 0 chr12 138067624 138067771 -5718684 + L1PB4 LINE L1 6007 6156 0 305 336 0 10 chr12 138067803 138067907 -5718548 - MER5A DNA MER1_type -49 140 38 2058 85 4 4 chr12 138068861 138069184 -5717271 - AluY SINE Alu 0 332 10 224 298 67 76 chr12 138069569 138069807 -5716648 - L2 LINE L2 -1210 2104 1869 970 152 92 52 chr12 138069912 138070040 -5716415 - L1MA7 LINE L1 -33 6258 6137 1815 167 27 3 chr12 138070040 138070333 -5716122 + AluJb SINE Alu 1 300 -12 970 152 92 52 chr12 138070333 138070454 -5716001 - L1MA7 LINE L1 -154 6137 5999 586 350 102 25 chr12 138070456 138070973 -5715482 - L2 LINE L2 -576 2738 2182 331 306 16 16 chr12 138071287 138071408 -5715047 + MIR SINE MIR 27 147 -61 1019 256 48 43 chr12 138072762 138073160 -5713295 - MLT1J LTR MaLR 0 511 112 1033 272 110 17 chr12 138073280 138073754 -5712701 - LTR33A LTR ERVL -3 520 3 2310 124 57 3 chr12 138074861 138075215 -5711240 - THE1C LTR MaLR 0 375 3 243 146 0 0 chr12 138075668 138075709 -5710746 + (TG)n Simple_repeat Simple_repeat 2 42 0 1948 151 85 14 chr12 138075734 138076098 -5710357 + MLT1B LTR MaLR 1 390 0 236 393 0 0 chr12 138076099 138076183 -5710272 + L2 LINE L2 3143 3226 -46 483 265 43 43 chr12 138076231 138076416 -5710039 + MIR SINE MIR 7 191 -71 183 250 0 0 chr12 138076716 138076784 -5709671 + (TA)n Simple_repeat Simple_repeat 2 69 0 2805 116 52 4 chr12 138077808 138078267 -5708188 + L1PB1 LINE L1 5668 6148 -3 422 348 35 18 chr12 138078821 138079048 -5707407 - MIR SINE MIR -27 235 5 291 307 122 38 chr12 138079344 138079582 -5706873 + L2 LINE L2 2182 2439 -875 21 0 0 0 chr12 138080164 138080185 -5706270 + AT_rich Low_complexity Low_complexity 1 21 0 237 368 52 63 chr12 138081423 138081806 -5704649 + L2 LINE L2 2409 2787 -527 233 337 74 25 chr12 138081792 138081955 -5704500 + MIR SINE MIR 37 207 -55 * 4970 89 3 0 chr12 138082058 138082732 -5703723 - L1PA10 LINE L1 -11 6157 5482 501 129 0 0 chr12 138082833 138082918 -5703537 - L1P5 LINE L1 -479 5672 5588 266 347 111 44 chr12 138084120 138084345 -5702110 - L2 LINE L2 -25 3247 3008 374 253 24 78 chr12 138085375 138085541 -5700914 + MIR3 SINE MIR 4 160 -48 26 30 0 0 chr12 138086942 138086975 -5699480 + AT_rich Low_complexity Low_complexity 1 33 0 254 209 23 70 chr12 138087883 138087918 -5698537 + MLT1J2 LTR MaLR 1 36 -414 488 256 125 12 chr12 138087918 138088086 -5698369 - MER5A DNA MER1_type -2 187 1 254 209 23 70 chr12 138088086 138088136 -5698319 + MLT1J2 LTR MaLR 36 82 -368 1346 178 21 0 chr12 138088271 138088552 -5697903 + L1MA5A LINE L1 5941 6227 -70 317 285 109 15 chr12 138088772 138088893 -5697562 + MIR SINE MIR 5 142 -120 486 191 0 9 chr12 138088893 138089008 -5697447 + L1MB8 LINE L1 6065 6178 0 317 285 109 15 chr12 138089008 138089023 -5697432 + MIR SINE MIR 142 154 -108 300 273 71 0 chr12 138089061 138089160 -5697295 - MIR SINE MIR -2 260 155 407 238 82 85 chr12 138089360 138089642 -5696813 - L1MC4a LINE L1 -1799 6009 5729 1650 175 47 12 chr12 138089797 138090140 -5696315 + MLT1A1 LTR MaLR 1 355 -10 667 261 35 22 chr12 138090443 138090673 -5695782 + L1ME3 LINE L1 5922 6154 -8 226 259 19 0 chr12 138090679 138090733 -5695722 + GA-rich Low_complexity Low_complexity 2 56 0 229 100 120 0 chr12 138091217 138091267 -5695188 - L1MB2 LINE L1 0 6171 6116 23 0 0 0 chr12 138091267 138091290 -5695165 + AT_rich Low_complexity Low_complexity 1 23 0 1088 234 0 0 chr12 138091290 138091538 -5694917 - AluSx SINE Alu -27 285 38 2203 186 63 17 chr12 138093804 138094162 -5692293 - L1PB3 LINE L1 0 6154 5814 486 49 0 0 chr12 138094162 138094223 -5692232 + (TA)n Simple_repeat Simple_repeat 1 61 0 2203 186 63 17 chr12 138094223 138094621 -5691834 - L1PB3 LINE L1 -340 5814 5347 186 287 106 21 chr12 138095279 138095373 -5691082 - L2 LINE L2 -1795 1519 1418 2268 122 0 10 chr12 138095687 138095998 -5690457 + AluSq SINE Alu 1 308 -5 661 142 8 67 chr12 138096047 138096181 -5690274 + AluJo SINE Alu 9 134 -178 210 143 0 0 chr12 138096185 138096220 -5690235 + (TA)n Simple_repeat Simple_repeat 2 36 0 1368 164 35 0 chr12 138096321 138096553 -5689902 + AluJb SINE Alu 64 303 -9 454 243 71 43 chr12 138096594 138096734 -5689721 - MIR SINE MIR -112 150 7 355 255 66 0 chr12 138096982 138097088 -5689367 + MER103 DNA DNA 7 119 -47 850 225 27 5 chr12 138097145 138097367 -5689088 + MER68 LTR ERV1 1 227 -335 831 209 6 23 chr12 138097400 138097577 -5688878 + AluJo SINE Alu 1 174 -138 270 163 0 0 chr12 138097711 138097754 -5688701 - Alu SINE Alu -258 44 2 518 48 48 19 chr12 138097901 138098006 -5688449 + (TA)n Simple_repeat Simple_repeat 2 109 0 780 191 67 143 chr12 138098006 138098266 -5688189 + Charlie4a DNA MER1_type 83 294 -1667 2024 63 0 0 chr12 138098266 138098519 -5687936 - L1PA5 LINE L1 -8 6146 5894 780 191 67 143 chr12 138098519 138098718 -5687737 + Charlie4a DNA MER1_type 294 507 -1 1300 214 24 0 chr12 138098955 138099203 -5687252 - AluJb SINE Alu -58 254 1 566 326 22 67 chr12 138099624 138099891 -5686564 + L2 LINE L2 3016 3270 -2 204 125 0 0 chr12 138100069 138100101 -5686354 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 491 237 42 8 chr12 138100101 138100219 -5686236 - L2 LINE L2 -2 3311 3190 194 0 0 37 chr12 138101874 138101901 -5684554 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1153 72 0 0 chr12 138101901 138102054 -5684401 - L1PA4 LINE L1 -16 6139 5987 263 232 86 16 chr12 138102326 138102450 -5684005 - MLT1J1 LTR MaLR 0 446 312 348 208 176 8 chr12 138102568 138102693 -5683762 - MLT1J1 LTR MaLR -300 146 1 33 0 0 0 chr12 138102695 138102728 -5683727 + AT_rich Low_complexity Low_complexity 1 33 0 270 301 53 35 chr12 138102740 138102853 -5683602 - MIR SINE MIR -73 135 21 611 240 7 53 chr12 138103452 138103602 -5682853 - MIR SINE MIR -102 160 18 1088 234 87 13 chr12 138103607 138103906 -5682549 - MLT1F LTR MaLR -1 541 221 268 208 0 0 chr12 138104517 138104565 -5681890 + MIR SINE MIR 200 247 -15 398 263 88 51 chr12 138104642 138104779 -5681676 + L2 LINE L2 3168 3309 -4 228 256 0 0 chr12 138104827 138104913 -5681542 + (CAT)n Simple_repeat Simple_repeat 2 87 0 314 295 45 64 chr12 138105150 138105306 -5681149 + MIR SINE MIR 31 183 -79 211 353 59 59 chr12 138105744 138105863 -5680592 - L2 LINE L2 -12 3260 3142 322 250 12 31 chr12 138105933 138106072 -5680383 + MLT1L LTR MaLR 148 298 -290 389 321 114 16 chr12 138106402 138106595 -5679860 - L2 LINE L2 -189 3083 2872 619 262 58 6 chr12 138107882 138108054 -5678401 - MIR SINE MIR -63 199 19 772 164 46 0 chr12 138109012 138109164 -5677291 + L1MA10 LINE L1 6166 6324 -10 1928 167 3 3 chr12 138109164 138109475 -5676980 - AluJo SINE Alu -1 311 1 24 86 0 0 chr12 138109477 138109512 -5676943 + AT_rich Low_complexity Low_complexity 1 35 0 1264 233 69 47 chr12 138109650 138110058 -5676397 + LTR16A LTR ERVL 25 441 -9 598 328 64 13 chr12 138110461 138110696 -5675759 - MIR SINE MIR -14 248 2 225 0 0 0 chr12 138112677 138112702 -5673753 + (A)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chr12 138113075 138113108 -5673347 + AT_rich Low_complexity Low_complexity 1 33 0 569 231 0 7 chr12 138113292 138113439 -5673016 - MLT2B1 LTR ERVL -369 151 6 24 0 0 0 chr12 138114315 138114339 -5672116 + AT_rich Low_complexity Low_complexity 1 24 0 274 71 0 24 chr12 138115017 138115059 -5671396 - THE1C LTR MaLR -334 41 1 9036 132 32 48 chr12 138115059 138116664 -5669791 - THE1C-int LTR MaLR 0 1580 1 645 101 10 0 chr12 138116664 138116763 -5669692 - THE1C LTR MaLR 0 375 276 204 40 0 0 chr12 138117575 138117600 -5668855 + (TG)n Simple_repeat Simple_repeat 2 26 0 270 145 43 43 chr12 138117978 138118047 -5668408 - L1MD1 LINE L1 -11 6231 6163 189 74 0 0 chr12 138118100 138118127 -5668328 + (TG)n Simple_repeat Simple_repeat 2 28 0 1204 170 82 18 chr12 138118129 138118411 -5668044 - L1MD2 LINE L1 -229 6130 5831 578 215 0 0 chr12 138118511 138118632 -5667823 + MER20 DNA MER1_type 99 219 0 383 308 47 0 chr12 138119065 138119172 -5667283 - L2 LINE L2 -1 3312 3201 751 321 83 13 chr12 138119611 138120078 -5666377 + LTR33 LTR ERVL 1 500 -21 311 318 12 0 chr12 138120087 138120172 -5666283 + L2 LINE L2 3187 3272 0 342 254 101 83 chr12 138121497 138121714 -5664741 + MIR SINE MIR 31 251 -11 414 167 0 0 chr12 138121936 138122002 -5664453 - AluS SINE Alu -247 66 1 1479 121 0 0 chr12 138122003 138122235 -5664220 - L1P LINE L1 -1131 5015 4784 587 218 65 6 chr12 138124235 138124405 -5662050 - L1MD2 LINE L1 -528 5636 5457 760 179 0 15 chr12 138124505 138124639 -5661816 + FLAM_C SINE Alu 1 132 -1 298 345 63 17 chr12 138124694 138124868 -5661587 + MER5A DNA MER1_type 7 188 -1 495 215 35 35 chr12 138125009 138125181 -5661274 + L1MCa LINE L1 1233 1404 -5022 1709 187 3 17 chr12 138125183 138125482 -5660973 + AluJb SINE Alu 1 295 -17 1481 197 13 17 chr12 138125905 138126204 -5660251 - MLT2B1 LTR ERVL -222 298 1 548 336 60 57 chr12 138126222 138126591 -5659864 - L2 LINE L2 -397 2917 2548 246 293 99 32 chr12 138126744 138126867 -5659588 + MER5B DNA MER1_type 54 181 -8 267 310 35 55 chr12 138127539 138127684 -5658771 - MIR SINE MIR -49 213 72 930 236 9 70 chr12 138127711 138128177 -5658278 - MLT2B1 LTR ERVL -28 492 69 4469 169 34 8 chr12 138128708 138129680 -5656775 - L1MB2 LINE L1 0 6171 5167 781 157 66 12 chr12 138129690 138129856 -5656599 + MER58B DNA MER1_type 167 341 0 917 170 21 26 chr12 138130022 138130216 -5656239 - L1M3 LINE L1 -600 5571 5379 213 311 88 47 chr12 138130469 138130662 -5655793 + L2 LINE L2 474 674 -2640 1105 130 0 0 chr12 138131677 138131838 -5654617 - AluSg/x SINE Alu -18 292 132 302 287 113 36 chr12 138132370 138132565 -5653890 + Charlie7 DNA MER1_type 206 415 -2197 334 289 39 0 chr12 138133044 138133148 -5653307 + MLT1G LTR MaLR 10 117 -473 460 294 6 17 chr12 138133334 138133514 -5652941 + MLT1H1 LTR MaLR 371 548 -7 22 35 0 0 chr12 138136154 138136183 -5650272 + AT_rich Low_complexity Low_complexity 1 29 0 2418 187 41 12 chr12 138136785 138137292 -5649163 + Tigger7 DNA MER2_type 1 522 -1965 382 185 136 0 chr12 138137291 138137372 -5649083 + Tigger7 DNA MER2_type 2400 2491 0 * 21 0 0 0 chr12 138137706 138137727 -5648728 + AT_rich Low_complexity Low_complexity 1 21 0 204 158 0 26 chr12 138138362 138138376 -5648079 + GA-rich Low_complexity Low_complexity 2 15 -23 1957 151 3 16 chr12 138138376 138138688 -5647767 + AluJo SINE Alu 1 308 -4 204 158 0 26 chr12 138138688 138138711 -5647744 + GA-rich Low_complexity Low_complexity 15 38 0 227 234 62 0 chr12 138139343 138139407 -5647048 + CT-rich Low_complexity Low_complexity 5 72 0 254 285 91 83 chr12 138139411 138139494 -5646961 - L3b LINE CR1 -183 1400 1319 1850 147 14 3 chr12 138139494 138139787 -5646668 - AluJb SINE Alu -14 298 3 254 285 91 83 chr12 138139787 138139945 -5646510 - L3b LINE CR1 -264 1319 1157 277 351 62 43 chr12 138140624 138140659 -5645796 - MIR SINE MIR -19 243 210 1364 167 107 0 chr12 138140659 138140922 -5645533 - AluJo SINE Alu -21 291 1 277 351 62 43 chr12 138140922 138141094 -5645361 - MIR SINE MIR -52 210 32 239 363 98 26 chr12 138141102 138141295 -5645160 + L3b LINE CR1 1374 1580 -3 1804 67 0 0 chr12 138141385 138141625 -5644830 - L1PA5 LINE L1 -464 5690 5451 3362 86 2 2 chr12 138141625 138142073 -5644382 + L1PA5 LINE L1 5699 6154 0 356 310 35 28 chr12 138142219 138142364 -5644091 + MIR SINE MIR 85 230 -32 212 351 115 52 chr12 138142395 138142586 -5643869 + L2 LINE L2 3070 3272 0 * 377 262 30 4 chr12 138142583 138142708 -5643747 - MIR SINE MIR -62 146 51 734 285 127 47 chr12 138142878 138143499 -5642956 - L2 LINE L2 -746 2568 1898 363 222 10 50 chr12 138143735 138143834 -5642621 - MIR SINE MIR -70 192 98 1761 155 18 0 chr12 138143836 138144114 -5642341 - AluJb SINE Alu -29 283 1 1653 155 19 8 chr12 138144147 138144405 -5642050 + AluSx SINE Alu 3 263 -49 1473 182 31 17 chr12 138144967 138145258 -5641197 - AluJo SINE Alu -17 295 1 461 290 40 45 chr12 138146970 138147170 -5639285 + MIR SINE MIR 6 204 -58 1941 153 52 43 chr12 138147272 138147853 -5638602 - THE1C-int LTR MaLR -1006 574 1 2346 110 38 30 chr12 138147853 138148225 -5638230 - THE1C LTR MaLR 0 375 1 583 290 60 8 chr12 138149492 138149744 -5636711 - L1ME3A LINE L1 -236 5934 5670 539 218 32 51 chr12 138149771 138149987 -5636468 - L1ME3A LINE L1 -2009 4137 3926 22 0 0 0 chr12 138150931 138150953 -5635502 + AT_rich Low_complexity Low_complexity 1 22 0 297 182 80 11 chr12 138150979 138151067 -5635388 - L1MC5 LINE L1 -60 7901 7808 280 244 90 0 chr12 138152244 138152322 -5634133 - MIR SINE MIR -60 148 64 308 150 12 62 chr12 138152811 138152891 -5633564 + MLT1K LTR MaLR 507 582 -6 429 220 129 35 chr12 138153783 138154101 -5632354 - L1ME4a LINE L1 -2 6119 5772 1369 204 56 34 chr12 138154142 138154499 -5631956 + MLT1A1 LTR MaLR 1 365 0 245 257 88 56 chr12 138154570 138154889 -5631566 + LTR33 LTR ERVL 24 352 -169 188 234 0 0 chr12 138156375 138156422 -5630033 + L2 LINE L2 3266 3312 -1 36 77 0 0 chr12 138157172 138157250 -5629205 + AT_rich Low_complexity Low_complexity 1 78 0 230 289 130 10 chr12 138157483 138157691 -5628764 - L1ME3A LINE L1 -222 5948 5716 197 33 33 0 chr12 138158250 138158280 -5628175 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 398 226 35 35 chr12 138158602 138158717 -5627738 - MIR SINE MIR -56 206 92 2372 59 0 7 chr12 138161291 138161594 -5624861 - AluY SINE Alu -10 301 1 521 299 68 6 chr12 138162310 138162487 -5623968 - MIR SINE MIR -28 234 47 489 283 82 0 chr12 138163645 138163829 -5622626 - MLT2B1 LTR ERVL -321 199 1 1169 269 149 63 chr12 138164295 138165155 -5621300 + L2 LINE L2 2363 3298 -15 309 406 29 25 chr12 138165521 138165797 -5620658 + L2 LINE L2 2987 3263 -9 22 35 0 0 chr12 138165825 138165854 -5620601 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 138166114 138166135 -5620320 + AT_rich Low_complexity Low_complexity 1 21 0 401 324 37 0 chr12 138167093 138167229 -5619226 - MIR SINE MIR -44 218 78 354 283 38 9 chr12 138167426 138167532 -5618923 + MER96 DNA MER1_type? 1 109 -66 477 282 24 8 chr12 138167982 138168106 -5618349 - MIR3 SINE MIR -50 158 33 230 368 0 21 chr12 138168274 138168369 -5618086 + MER5A DNA MER1_type 14 106 -83 2157 111 0 14 chr12 138168786 138169083 -5617372 - AluSx SINE Alu -17 295 3 328 209 78 54 chr12 138169173 138169302 -5617153 + Charlie8 DNA MER1_type 54 185 -2232 762 245 122 21 chr12 138169317 138169616 -5616839 + MLT1A1 LTR MaLR 15 364 -1 671 275 148 42 chr12 138169673 138170146 -5616309 + MLT1H1 LTR MaLR 3 525 -30 2120 132 0 0 chr12 138170319 138170607 -5615848 - AluSx SINE Alu -23 289 2 28 29 0 0 chr12 138170611 138170646 -5615809 + AT_rich Low_complexity Low_complexity 1 35 0 1448 281 72 21 chr12 138171008 138171763 -5614692 + L1MD2 LINE L1 3964 4756 -1390 647 263 58 19 chr12 138171763 138171968 -5614487 - MER20 DNA MER1_type -1 218 6 1609 273 30 52 chr12 138171969 138172600 -5613855 + L1MD2 LINE L1 4753 5369 -777 886 230 10 15 chr12 138172863 138173067 -5613388 + AluY SINE Alu 106 308 -3 861 263 113 38 chr12 138173067 138173954 -5612501 + L1MD2 LINE L1 5389 6355 -4 330 340 54 14 chr12 138173962 138174330 -5612125 + L1MC1 LINE L1 5592 5974 -359 * 1558 254 80 6 chr12 138174001 138174512 -5611943 + L1MB7 LINE L1 5636 6184 0 180 0 0 0 chr12 138175031 138175051 -5611404 + (A)n Simple_repeat Simple_repeat 1 20 0 226 281 125 0 chr12 138175090 138175186 -5611269 + L2 LINE L2 3163 3270 -2 266 273 94 8 chr12 138175496 138175624 -5610831 + HAL1b LINE L1 772 910 -438 23 0 0 0 chr12 138175779 138175802 -5610653 + AT_rich Low_complexity Low_complexity 1 23 0 2646 153 44 30 chr12 138175840 138175872 -5610583 - L1MA9 LINE L1 0 6312 6282 2187 102 3 3 chr12 138175872 138176166 -5610289 + AluSp SINE Alu 6 299 -14 2646 153 44 30 chr12 138176166 138176638 -5609817 - L1MA9 LINE L1 -30 6282 5801 1233 184 41 0 chr12 138176638 138176864 -5609591 + L1MA9 LINE L1 5549 5787 -525 243 61 0 0 chr12 138176864 138176897 -5609558 + (CA)n Simple_repeat Simple_repeat 1 33 0 1233 184 41 0 chr12 138176897 138176915 -5609540 + L1MA7 LINE L1 5787 5803 -509 221 328 122 61 chr12 138177826 138178006 -5608449 - MIR SINE MIR -58 204 14 225 0 0 0 chr12 138178759 138178784 -5607671 + (TA)n Simple_repeat Simple_repeat 2 26 0 2026 108 10 10 chr12 138178786 138179082 -5607373 - AluSx SINE Alu -16 296 1 2220 108 0 0 chr12 138179887 138180192 -5606263 - AluSg1 SINE Alu -4 305 1 965 108 48 0 chr12 138180199 138180366 -5606089 - L1MA7 LINE L1 -4 6287 6113 593 168 80 0 chr12 138180367 138180480 -5605975 + L1MA7 LINE L1 5828 5949 -342 3083 226 94 30 chr12 138180603 138181578 -5604877 - L1MD2 LINE L1 -1 6358 5314 1694 169 0 30 chr12 138181578 138181873 -5604582 - AluJb SINE Alu -21 291 6 3083 226 94 30 chr12 138181873 138181908 -5604547 - L1MD2 LINE L1 -1045 5314 5283 752 227 0 0 chr12 138182204 138182336 -5604119 + FLAM_A SINE Alu 1 132 -1 422 325 151 30 chr12 138182483 138182821 -5603634 - L2 LINE L2 0 3313 2935 2025 228 19 88 chr12 138183028 138183315 -5603140 - REP3 LTR ERV 0 562 257 2268 120 0 0 chr12 138183315 138183623 -5602832 - AluSc SINE Alu -1 308 1 2025 228 19 88 chr12 138183623 138183779 -5602676 - REP3 LTR ERV -305 257 166 1791 158 32 0 chr12 138183779 138184064 -5602391 - AluJb SINE Alu -16 296 3 2025 228 19 88 chr12 138184064 138184199 -5602256 - REP3 LTR ERV -396 166 23 254 176 0 95 chr12 138186517 138186591 -5599864 - MER3 DNA MER1_type -4 205 139 216 0 0 0 chr12 138187412 138187436 -5599019 + (T)n Simple_repeat Simple_repeat 1 24 0 192 97 0 0 chr12 138187700 138187731 -5598724 + (TG)n Simple_repeat Simple_repeat 1 31 0 1318 194 68 18 chr12 138187975 138188254 -5598201 + MER68 LTR ERV1 22 314 -248 213 149 21 0 chr12 138189413 138189460 -5596995 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1674 108 73 0 chr12 138189462 138189694 -5596761 - AluSx SINE Alu -25 287 39 308 308 15 31 chr12 138189726 138189856 -5596599 + L2 LINE L2 3137 3264 -8 912 219 36 36 chr12 138190038 138190257 -5596198 + MER20 DNA MER1_type 1 219 0 253 218 167 39 chr12 138190358 138190436 -5596019 - L2 LINE L2 -18 3295 3208 2475 193 57 80 chr12 138190483 138190591 -5595864 + L1MD2 LINE L1 5386 5495 -864 1500 209 7 26 chr12 138190591 138190893 -5595562 + AluJo SINE Alu 2 297 -15 2475 193 57 80 chr12 138190893 138191598 -5594857 + L1MD2 LINE L1 5495 6355 -4 355 154 17 12 chr12 138191610 138191670 -5594785 - L1MA7 LINE L1 -308 5983 5924 926 124 90 0 chr12 138191670 138191848 -5594607 + L1MA7 LINE L1 6096 6289 -2 355 154 17 12 chr12 138191848 138191862 -5594593 - L1MA7 LINE L1 -367 5924 5912 34 42 0 0 chr12 138191883 138191931 -5594524 + AT_rich Low_complexity Low_complexity 1 48 0 473 73 118 0 chr12 138191936 138192004 -5594451 + MADE1 DNA Mariner 1 76 -4 413 200 0 0 chr12 138192031 138192111 -5594344 - L2 LINE L2 -249 3064 2985 457 222 111 8 chr12 138192402 138192519 -5593936 + L2 LINE L2 3184 3312 -1 825 228 32 43 chr12 138193115 138193396 -5593059 + MER33 DNA MER1_type 1 278 -46 1169 278 27 42 chr12 138193399 138193878 -5592577 + L1MEc LINE L1 40 511 -5885 917 291 99 58 chr12 138194136 138194704 -5591751 - MLT1E LTR MaLR -1 592 2 1031 290 34 11 chr12 138194711 138195090 -5591365 + L1MEc LINE L1 587 974 -5422 787 213 19 0 chr12 138195099 138195254 -5591201 - MLT2B2 LTR ERVL -355 160 3 241 217 196 0 chr12 138195336 138195428 -5591027 + L1ME4a LINE L1 5978 6087 -34 235 161 0 195 chr12 138196787 138196905 -5589550 - L1M4 LINE L1 -1266 4880 4786 832 108 169 0 chr12 138196905 138197035 -5589420 - AluSg/x SINE Alu -6 304 153 3019 249 21 22 chr12 138197124 138197639 -5588816 - L1ME1 LINE L1 -7 6159 5651 3141 115 5 7 chr12 138197639 138198074 -5588381 - MER57B LTR ERV1 0 434 1 3019 249 21 22 chr12 138198074 138198525 -5587930 - L1ME1 LINE L1 -515 5651 5201 396 103 0 0 chr12 138198548 138198606 -5587849 + (TA)n Simple_repeat Simple_repeat 2 59 0 2115 145 0 0 chr12 138198649 138198952 -5587503 - AluSx SINE Alu -5 307 5 814 223 11 0 chr12 138198987 138199175 -5587280 - L1P LINE L1 -4297 1849 1660 1930 161 3 3 chr12 138199285 138199577 -5586878 - AluSq SINE Alu -21 292 1 340 182 88 81 chr12 138199582 138199730 -5586725 - L1M4 LINE L1 -1347 4799 4651 23 0 0 0 chr12 138200798 138200821 -5585634 + AT_rich Low_complexity Low_complexity 1 23 0 295 250 51 148 chr12 138201872 138201990 -5584465 - L2 LINE L2 0 3313 3220 2031 106 0 40 chr12 138201990 138202291 -5584164 - AluSg SINE Alu 0 310 22 295 250 51 148 chr12 138202291 138202368 -5584087 - L2 LINE L2 -93 3220 3137 243 284 111 0 chr12 138202670 138202751 -5583704 + MLT1I LTR MaLR 320 409 0 220 350 181 6 chr12 138202769 138202946 -5583509 - L2 LINE L2 -205 3108 2901 222 377 6 27 chr12 138202969 138203152 -5583303 + (CACG)n Simple_repeat Simple_repeat 1 179 0 195 236 0 0 chr12 138203160 138203232 -5583223 + (CA)n Simple_repeat Simple_repeat 1 72 0 1005 146 23 12 chr12 138203446 138203617 -5582838 - MLT1C LTR MaLR -2 465 293 434 257 53 20 chr12 138203609 138203761 -5582694 - MLT1C LTR MaLR -409 158 2 * 372 273 105 17 chr12 138203798 138203970 -5582485 + MIR SINE MIR 29 215 -47 1307 195 0 76 chr12 138204047 138204375 -5582080 + AluJb SINE Alu 5 307 -5 1376 134 57 0 chr12 138204439 138204686 -5581769 - L1MA8 LINE L1 -117 6174 5914 1104 135 42 21 chr12 138204682 138204875 -5581580 + L1MA8 LINE L1 5726 5922 -369 * 544 200 52 13 chr12 138204869 138205024 -5581431 - L1ME1 LINE L1 -944 5202 5042 * 3654 205 58 16 chr12 138205035 138205999 -5580456 - L1MB5 LINE L1 -6 6168 5162 21 57 0 0 chr12 138209008 138209043 -5577412 + AT_rich Low_complexity Low_complexity 1 35 0 242 172 31 0 chr12 138210434 138210498 -5575957 + (TATG)n Simple_repeat Simple_repeat 3 68 0 249 204 111 0 chr12 138210537 138210591 -5575864 + LTR48B LTR ERV1 6 65 -579 1220 235 116 46 chr12 138210612 138211025 -5575430 + MER39 LTR ERV1 265 706 -1 379 0 0 0 chr12 138211391 138211435 -5575020 + L1PA3 LINE L1 6109 6152 -3 1720 154 4 4 chr12 138211742 138212008 -5574447 + AluJb SINE Alu 1 266 -46 201 74 0 0 chr12 138212020 138212047 -5574408 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4460 265 76 22 chr12 138212265 138214051 -5572404 + L1M4 LINE L1 2658 4539 -1607 293 265 46 33 chr12 138215198 138215349 -5571106 + L1MEc LINE L1 472 624 -6201 216 331 65 36 chr12 138216793 138216932 -5569523 - MER5A DNA MER1_type -4 185 43 * 262 277 108 77 chr12 138216815 138216945 -5569510 + MER5A DNA MER1_type 38 171 -18 500 150 0 0 chr12 138217027 138217107 -5569348 - MER51A LTR ERV1 -18 616 537 346 239 106 0 chr12 138217462 138217604 -5568851 + L1ME4a LINE L1 5964 6120 -1 2165 91 8 136 chr12 138217905 138218311 -5568144 + MER51A LTR ERV1 1 447 -187 266 233 3 22 chr12 138218607 138218696 -5567759 - LTR41 LTR ERVL -1 794 687 1928 126 12 44 chr12 138218716 138219057 -5567398 - HSMAR2 DNA Mariner -2 1300 971 1427 164 77 50 chr12 138219062 138219360 -5567095 - AluJo SINE Alu 0 312 7 5720 143 16 27 chr12 138219366 138220364 -5566091 - HSMAR2 DNA Mariner -315 987 1 329 239 9 124 chr12 138220365 138220478 -5565977 - LTR41 LTR ERVL -123 650 551 481 250 157 5 chr12 138220624 138220828 -5565627 - LTR50 LTR ERVL -540 255 21 798 295 55 55 chr12 138221953 138222801 -5563654 + L1MEc LINE L1 1013 1772 -4838 1142 226 31 42 chr12 138222873 138223232 -5563223 + L1ME1 LINE L1 5808 6162 -4 606 308 132 6 chr12 138223278 138223707 -5562748 - MLT1K LTR MaLR -6 582 44 389 371 8 47 chr12 138224413 138224666 -5561789 + L2 LINE L2 2838 3080 -233 216 316 41 0 chr12 138225345 138225443 -5561012 - MIR SINE MIR -2 260 159 344 277 81 93 chr12 138225465 138225786 -5560669 - MLT1I LTR MaLR -33 376 60 1245 213 40 58 chr12 138225786 138226162 -5560293 - MLT1A2 LTR MaLR 0 374 6 396 308 46 8 chr12 138226258 138226388 -5560067 - MIR SINE MIR -101 161 27 330 45 0 0 chr12 138226976 138227020 -5559435 + (CA)n Simple_repeat Simple_repeat 2 45 0 1032 187 33 70 chr12 138227549 138227996 -5558459 - MLT1D LTR MaLR -2 503 9 798 191 19 6 chr12 138228541 138228703 -5557752 + L1MB3 LINE L1 6016 6179 -4 209 274 41 27 chr12 138228809 138228882 -5557573 + MIR SINE MIR 77 150 -112 353 294 119 45 chr12 138228903 138229416 -5557039 + L2 LINE L2 2425 2975 -339 207 204 0 0 chr12 138229540 138229584 -5556871 + (CA)n Simple_repeat Simple_repeat 2 45 0 218 308 9 45 chr12 138229669 138229794 -5556661 + A-rich Low_complexity Low_complexity 2 210 0 187 353 0 0 chr12 138229883 138229951 -5556504 - L2 LINE L2 -9 3304 3237 738 127 0 1 chr12 138229957 138230221 -5556234 + AluSc SINE Alu 19 314 0 577 297 24 18 chr12 138230245 138230609 -5555846 - L2 LINE L2 -97 3216 2387 460 276 31 12 chr12 138231440 138231603 -5554852 - MIR SINE MIR -92 170 5 242 260 0 70 chr12 138231781 138231881 -5554574 + CT-rich Low_complexity Low_complexity 1 93 0 1325 234 49 25 chr12 138232024 138232472 -5553983 - L1M4 LINE L1 -757 5389 4931 582 231 12 29 chr12 138233320 138233493 -5552962 + MLT1H LTR MaLR 380 549 0 402 330 93 20 chr12 138234052 138234352 -5552103 + MLT1J2 LTR MaLR 39 360 -90 252 175 0 0 chr12 138234678 138234718 -5551737 - MER50-int LTR ERV1 -7163 42 3 1614 184 24 3 chr12 138234718 138235011 -5551444 - MER50 LTR ERV1 -20 714 416 652 149 44 0 chr12 138235031 138235145 -5551310 + MER50 LTR ERV1 1 119 -615 2236 152 32 2 chr12 138235145 138235547 -5550908 - MER50 LTR ERV1 -320 414 1 653 259 139 32 chr12 138238854 138239037 -5547418 - MER69 DNA AcHobo -3 2523 2361 3323 147 38 0 chr12 138239037 138239569 -5546886 + MER41C LTR ERV1 3 554 0 653 259 139 32 chr12 138239569 138239729 -5546726 - MER69 DNA AcHobo -165 2361 2143 499 295 49 98 chr12 138239942 138240308 -5546147 - MER69 DNA AcHobo -2032 494 147 2361 186 236 93 chr12 138240874 138241766 -5544689 + LTR28 LTR ERV1 1 1020 0 1286 206 26 75 chr12 138242390 138242773 -5543682 - MER67C LTR ERV1 -247 267 18 2084 139 7 3 chr12 138243186 138243488 -5542967 + AluSg SINE Alu 1 303 -7 195 178 22 0 chr12 138243590 138243635 -5542820 - L2 LINE L2 -244 3069 3024 782 161 0 0 chr12 138244236 138244360 -5542095 - FLAM_C SINE Alu -14 129 6 493 319 44 34 chr12 138244667 138245053 -5541402 + L2 LINE L2 2919 3308 -5 347 287 0 0 chr12 138245059 138245153 -5541302 - MIR SINE MIR -57 151 58 235 244 0 0 chr12 138245340 138245385 -5541070 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 1348 171 9 0 chr12 138245436 138245652 -5540803 + AluJb SINE Alu 85 302 -10 203 29 88 0 chr12 138245652 138245686 -5540769 + T-rich Low_complexity Low_complexity 2 38 0 1384 198 40 70 chr12 138247459 138247858 -5538597 + MLT1B LTR MaLR 1 387 -3 232 312 64 28 chr12 138248250 138248359 -5538096 + L2 LINE L2 3143 3255 -17 255 214 18 0 chr12 138248361 138248417 -5538038 + (CA)n Simple_repeat Simple_repeat 2 58 0 1617 280 83 12 chr12 138248508 138249011 -5537444 + MLT1K LTR MaLR 37 575 -13 593 228 106 32 chr12 138249477 138249666 -5536789 + Charlie8 DNA MER1_type 44 246 -2171 2080 123 3 7 chr12 138250606 138250906 -5535549 + AluSc SINE Alu 1 299 -10 526 267 23 8 chr12 138252286 138252417 -5534038 - L2 LINE L2 0 3313 3181 1119 241 40 19 chr12 138252590 138252913 -5533542 + L1MB5 LINE L1 5807 6136 -38 268 268 93 38 chr12 138252922 138253105 -5533350 - L2 LINE L2 -303 3010 2818 303 265 46 33 chr12 138253832 138253983 -5532472 - L1MEc LINE L1 -6201 195 43 652 274 70 41 chr12 138257558 138258043 -5528412 - L1MC4 LINE L1 -507 7301 6919 237 211 14 28 chr12 138258048 138258119 -5528336 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 188 83 0 28 chr12 138258122 138258158 -5528297 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2216 85 3 0 chr12 138258158 138258452 -5528003 - L1PA8 LINE L1 -24 6148 5854 567 0 0 0 chr12 138258452 138258515 -5527940 + (CTATT)n Simple_repeat Simple_repeat 2 64 0 355 139 33 44 chr12 138258567 138258747 -5527708 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1065 267 109 119 chr12 138258803 138258887 -5527568 - L1MC4 LINE L1 -905 6988 6905 934 67 0 0 chr12 138258887 138259006 -5527449 - L1PA5 LINE L1 0 6154 6036 1065 267 109 119 chr12 138259006 138260052 -5526403 - L1MC4 LINE L1 -988 6905 5785 560 217 62 107 chr12 138260099 138260343 -5526112 + MLT1D LTR MaLR 9 241 -301 2202 229 132 34 chr12 138260732 138261416 -5525039 - L1MD2 LINE L1 -26 6333 5583 970 258 83 107 chr12 138262758 138263095 -5523360 - MER77 LTR ERV1 -6 599 271 1260 181 28 4 chr12 138263993 138264242 -5522213 - L1MA7 LINE L1 -352 5939 5685 336 171 76 57 chr12 138264210 138264315 -5522140 + L1MA7 LINE L1 5941 6047 -244 * 539 128 0 142 chr12 138264326 138264407 -5522048 + L1MA7 LINE L1 6160 6214 -77 1708 124 10 78 chr12 138264407 138264713 -5521742 + AluSx SINE Alu 1 285 -27 539 128 0 142 chr12 138264713 138264772 -5521683 + L1MA7 LINE L1 6214 6280 -11 564 276 58 45 chr12 138265157 138265300 -5521155 - Charlie8 DNA MER1_type -1730 687 547 2006 157 0 0 chr12 138265300 138265605 -5520850 - AluSx SINE Alu -7 305 1 564 276 58 45 chr12 138265605 138265773 -5520682 - Charlie8 DNA MER1_type -1870 547 372 182 254 60 0 chr12 138265800 138265867 -5520588 - MIR SINE MIR -9 253 183 799 208 117 71 chr12 138265924 138266341 -5520114 + MLT1C LTR MaLR 1 467 0 705 241 15 88 chr12 138266417 138266620 -5519835 + MLT1D LTR MaLR 252 468 -37 408 20 0 0 chr12 138266620 138266669 -5519786 + (TG)n Simple_repeat Simple_repeat 2 50 0 2519 105 3 21 chr12 138266669 138267042 -5519413 - L1PA13 LINE L1 -6 6157 5792 705 241 15 88 chr12 138267042 138267111 -5519344 + MLT1D LTR MaLR 466 505 0 277 244 24 24 chr12 138267122 138267204 -5519251 - MIR SINE MIR -111 151 70 2029 116 0 17 chr12 138267244 138267566 -5518889 + AluSc SINE Alu 1 309 0 326 244 49 130 chr12 138267612 138267748 -5518707 - Charlie8 DNA MER1_type -2187 230 121 1652 152 0 90 chr12 138267748 138268070 -5518385 - AluJo SINE Alu -15 297 5 326 244 49 130 chr12 138268070 138268179 -5518276 - Charlie8 DNA MER1_type -2296 121 5 1283 228 110 11 chr12 138268213 138268568 -5517887 - MLT1B LTR MaLR 0 390 1 278 344 94 31 chr12 138269271 138269495 -5516960 + HERV16 LTR ERVL 2584 2821 -2175 285 295 96 24 chr12 138269786 138269952 -5516503 + HERV16 LTR ERVL 3247 3424 -2340 605 265 142 40 chr12 138270760 138271085 -5515370 + LTR16B LTR ERVL 107 464 0 427 303 13 0 chr12 138271206 138271361 -5515094 - MIR SINE MIR -8 254 98 2261 96 0 3 chr12 138271363 138271655 -5514800 + AluSx SINE Alu 13 303 -9 1416 284 43 51 chr12 138272630 138273254 -5513201 + MLT2E LTR ERVL 10 628 0 2280 112 0 3 chr12 138273380 138273692 -5512763 - AluSx SINE Alu -1 311 1 2169 134 116 16 chr12 138274298 138274685 -5511770 - MSTA LTR MaLR -2 426 1 2300 226 18 0 chr12 138274706 138275202 -5511253 - MLT1D LTR MaLR 0 505 1 325 268 62 0 chr12 138275706 138275803 -5510652 - L2 LINE L2 -1 3312 3210 350 304 166 0 chr12 138275811 138275992 -5510463 - L2 LINE L2 -251 3062 2852 288 229 39 21 chr12 138276396 138276503 -5509952 - MLT1J1 LTR MaLR -81 328 225 267 244 17 57 chr12 138278744 138278920 -5507535 + (CGGGG)n Simple_repeat Simple_repeat 1 169 0 1914 124 3 62 chr12 138280006 138280329 -5506126 - AluSx SINE Alu -8 304 1 360 0 0 0 chr12 138280337 138280377 -5506078 + (TG)n Simple_repeat Simple_repeat 2 41 0 1984 139 4 0 chr12 138280390 138280671 -5505784 - AluSx SINE Alu -30 282 1 394 297 88 5 chr12 138280782 138280974 -5505481 - L2 LINE L2 -264 3049 2842 866 260 124 68 chr12 138281003 138281194 -5505261 + MLT1J LTR MaLR 1 180 -331 1503 160 27 0 chr12 138281194 138281456 -5504999 - L1PA16 LINE L1 -1 6165 5897 866 260 124 68 chr12 138281456 138281748 -5504707 + MLT1J LTR MaLR 180 511 0 462 318 63 13 chr12 138281753 138281992 -5504463 - L2 LINE L2 -526 2788 2538 1970 248 37 30 chr12 138282032 138282630 -5503825 - L1ME1 LINE L1 0 6166 5565 290 90 0 146 chr12 138282638 138282727 -5503728 - MADE1 DNA Mariner 0 80 5 1594 140 114 7 chr12 138284189 138284461 -5501994 + AluSg SINE Alu 1 301 -9 2502 81 0 0 chr12 138284931 138285240 -5501215 - AluY SINE Alu -2 309 1 1187 216 85 40 chr12 138285315 138285644 -5500811 - MLT1D LTR MaLR -1 504 161 540 277 134 17 chr12 138285830 138286061 -5500394 + MIR SINE MIR 2 259 -3 1298 195 138 111 chr12 138287182 138287777 -5498678 - LTR36 LTR ERV1 0 611 1 361 222 53 82 chr12 138288156 138288308 -5498147 + MLT1K LTR MaLR 140 273 -342 374 247 192 55 chr12 138289264 138289595 -5496860 - MLT1J2 LTR MaLR 0 446 72 267 314 16 50 chr12 138290268 138290389 -5496066 + L2 LINE L2 2958 3074 -198 1062 154 87 30 chr12 138290660 138290862 -5495593 + L1MA8 LINE L1 6011 6233 -58 417 39 0 0 chr12 138290862 138290913 -5495542 + (TA)n Simple_repeat Simple_repeat 1 51 0 1062 154 87 30 chr12 138290913 138290976 -5495479 + L1MA8 LINE L1 6233 6291 0 376 285 88 52 chr12 138291172 138291365 -5495090 - MLT1J LTR MaLR 0 511 312 310 250 37 0 chr12 138292794 138292902 -5493553 + (TA)n Simple_repeat Simple_repeat 1 112 0 1649 248 14 52 chr12 138292902 138293403 -5493052 - MLT2B1 LTR ERVL -37 483 2 267 324 0 0 chr12 138293646 138293717 -5492738 + MER8 DNA MER2_type 109 179 -60 * 421 172 0 0 chr12 138293692 138293756 -5492699 + MER2 DNA MER2_type 282 345 0 436 274 9 0 chr12 138294184 138294290 -5492165 + MIR SINE MIR 4 110 -152 2680 29 6 0 chr12 138294503 138294816 -5491639 - L1PA4 LINE L1 -163 5992 5678 1374 36 12 0 chr12 138294816 138294984 -5491471 + L1PA4 LINE L1 5984 6153 -2 2270 82 0 28 chr12 138295355 138295680 -5490775 - AluY SINE Alu 0 317 1 3282 69 2 45 chr12 138295837 138296301 -5490154 + MLT2A1 LTR ERVL 1 444 0 240 239 15 15 chr12 138297473 138297540 -5488915 + L2 LINE L2 3237 3303 -10 1879 157 0 25 chr12 138298213 138298531 -5487924 - AluJb SINE Alu -1 311 2 434 257 37 52 chr12 138298949 138299085 -5487370 + MLT1E1 LTR MaLR 20 153 -440 213 328 17 0 chr12 138299108 138299224 -5487231 + (TA)n Simple_repeat Simple_repeat 1 118 0 1228 240 22 57 chr12 138299224 138299590 -5486865 + MLT1E1 LTR MaLR 302 654 0 456 62 0 0 chr12 138299680 138299744 -5486711 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 25 31 0 0 chr12 138300217 138300249 -5486206 + AT_rich Low_complexity Low_complexity 1 32 0 532 235 60 16 chr12 138300433 138300616 -5485839 + L1MCa LINE L1 18 208 -6218 1200 215 86 51 chr12 138300740 138301306 -5485149 + L1M4 LINE L1 4754 5338 -830 1856 166 3 0 chr12 138301306 138301595 -5484860 + AluJb SINE Alu 1 290 -22 1200 215 86 51 chr12 138301595 138301606 -5484849 + L1M4 LINE L1 5338 5347 -821 216 214 0 0 chr12 138301690 138301732 -5484723 + (TA)n Simple_repeat Simple_repeat 2 43 0 234 143 0 41 chr12 138301747 138301796 -5484659 - LTR66 LTR ERVL -170 440 394 25 51 0 0 chr12 138301824 138301863 -5484592 + AT_rich Low_complexity Low_complexity 1 39 0 273 57 0 0 chr12 138301875 138301910 -5484545 + (TA)n Simple_repeat Simple_repeat 2 36 0 238 250 14 28 chr12 138302713 138302785 -5483670 + MER5A DNA MER1_type 64 134 -55 2542 134 43 5 chr12 138302797 138303193 -5483262 + MLT2A1 LTR ERVL 1 411 -33 731 93 43 20 chr12 138303193 138303633 -5482822 + (TA)n Simple_repeat Simple_repeat 1 449 0 233 239 23 0 chr12 138303640 138303728 -5482727 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 341 18 95 53 chr12 138303732 138303901 -5482554 + (TA)n Simple_repeat Simple_repeat 2 177 0 1467 249 84 10 chr12 138303912 138304330 -5482125 + LTR2 LTR ERV1 1 449 0 46715 167 15 17 chr12 138304330 138312158 -5474297 + HERVE LTR ERV1 1 7811 -2 1349 250 82 24 chr12 138312158 138312582 -5473873 + LTR2 LTR ERV1 1 449 0 569 86 82 0 chr12 138312607 138312864 -5473591 + (TA)n Simple_repeat Simple_repeat 1 278 0 208 105 81 12 chr12 138312922 138313008 -5473447 + (TA)n Simple_repeat Simple_repeat 1 92 0 1332 116 0 0 chr12 138313017 138313198 -5473257 - MLT2A1 LTR ERVL -48 396 216 377 96 75 0 chr12 138313200 138313294 -5473161 + (TA)n Simple_repeat Simple_repeat 1 101 0 267 44 178 0 chr12 138313311 138313356 -5473099 + MLT2A1 LTR ERVL 392 444 0 366 304 18 0 chr12 138313488 138313600 -5472855 - MER81 DNA DNA 0 114 1 907 196 54 10 chr12 138314056 138314260 -5472195 - MER20 DNA MER1_type -6 213 1 324 293 51 32 chr12 138314704 138314861 -5471594 - MIR SINE MIR 0 262 103 241 337 0 11 chr12 138314857 138314949 -5471506 + MIR SINE MIR 167 257 -5 * 1394 239 107 67 chr12 138315870 138316099 -5470356 - L1ME3A LINE L1 -20 6150 5932 2520 99 36 6 chr12 138316099 138316463 -5469992 - THE1C LTR MaLR 0 375 1 1394 239 107 67 chr12 138316463 138316713 -5469742 - L1ME3A LINE L1 -238 5932 5693 207 0 0 0 chr12 138316713 138316736 -5469719 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1394 239 107 67 chr12 138316736 138316776 -5469679 - L1ME3A LINE L1 -477 5693 5656 1953 215 65 4 chr12 138316776 138317250 -5469205 - MLT1D LTR MaLR -2 503 1 1394 239 107 67 chr12 138317250 138317401 -5469054 - L1ME3A LINE L1 -514 5656 5451 330 26 0 0 chr12 138319777 138319799 -5466656 + (TG)n Simple_repeat Simple_repeat 1 61 0 330 26 0 0 chr12 138319799 138319838 -5466617 + (TG)n Simple_repeat Simple_repeat 2 40 0 263 234 0 39 chr12 138319908 138319985 -5466470 + (TATG)n Simple_repeat Simple_repeat 1 74 0 202 216 0 0 chr12 138320051 138320088 -5466367 + (CATA)n Simple_repeat Simple_repeat 3 39 0 186 179 34 17 chr12 138320519 138320636 -5465819 + (TA)n Simple_repeat Simple_repeat 2 120 0 348 247 21 0 chr12 138320687 138320784 -5465671 - L1MC4 LINE L1 -8 8034 7936 1831 200 52 33 chr12 138320839 138321320 -5465135 + L1MA9 LINE L1 5787 6276 -36 238 319 11 11 chr12 138321334 138321425 -5465030 + L1MC/D LINE L1 5771 5861 -1947 1729 125 34 47 chr12 138321480 138321776 -5464679 + AluJo SINE Alu 1 292 -20 1301 229 39 101 chr12 138321818 138321971 -5464484 - L1MD3 LINE L1 -490 7505 7344 1537 200 13 13 chr12 138321971 138322271 -5464184 + AluJb SINE Alu 1 300 -12 1301 229 39 101 chr12 138322271 138322485 -5463970 - L1MD3 LINE L1 -651 7344 7118 1460 248 48 6 chr12 138322485 138322840 -5463615 + MLT1A2 LTR MaLR 5 374 0 1301 229 39 101 chr12 138322840 138323092 -5463363 - L1MD3 LINE L1 -877 7118 6828 1722 212 56 21 chr12 138323549 138323979 -5462476 + MER65A LTR ERV1 1 445 0 807 321 53 11 chr12 138324520 138324897 -5461558 - MLT1L LTR MaLR 0 615 223 582 289 115 45 chr12 138325197 138325484 -5460971 - MLT1K LTR MaLR -91 497 191 2011 132 3 16 chr12 138325877 138326188 -5460267 + AluSx SINE Alu 1 307 -5 465 310 122 43 chr12 138326860 138327018 -5459437 - L1ME LINE L1 -469 5701 5557 1839 132 43 0 chr12 138327018 138327298 -5459157 - AluSx SINE Alu -20 292 1 465 310 122 43 chr12 138327298 138327468 -5458987 - L1ME LINE L1 -613 5557 5347 183 80 0 0 chr12 138328144 138328169 -5458286 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 248 222 0 32 chr12 138328666 138328729 -5457726 + T-rich Low_complexity Low_complexity 5 65 0 816 93 0 37 chr12 138328737 138328898 -5457557 + (TTCC)n Simple_repeat Simple_repeat 1 155 0 190 238 0 0 chr12 138329322 138329364 -5457091 + MIR SINE MIR 220 261 -1 996 270 39 30 chr12 138329716 138330053 -5456402 - MER92C LTR ERV1 -2 552 213 2308 77 7 20 chr12 138330066 138330365 -5456090 + AluY SINE Alu 1 295 -16 216 0 0 0 chr12 138330474 138330498 -5455957 + (T)n Simple_repeat Simple_repeat 1 24 0 359 297 64 63 chr12 138331061 138331306 -5455149 + MIR SINE MIR 12 262 0 3266 132 30 75 chr12 138331450 138332073 -5454382 + L1MA5A LINE L1 5702 6296 -1 216 0 0 0 chr12 138333001 138333025 -5453430 + (CA)n Simple_repeat Simple_repeat 2 25 0 273 250 83 10 chr12 138333662 138333758 -5452697 - MLT1L LTR MaLR -21 594 492 446 356 36 49 chr12 138333925 138334172 -5452283 - MLT1K LTR MaLR -342 246 3 2175 279 39 65 chr12 138334428 138335611 -5450844 + L1MEc LINE L1 8 1159 -5237 334 207 0 18 chr12 138335611 138335722 -5450733 + (TA)n Simple_repeat Simple_repeat 1 109 0 652 301 105 53 chr12 138335734 138336316 -5450139 + L1MEc LINE L1 1204 1815 -4581 1817 110 11 4 chr12 138336405 138336669 -5449786 + AluSx SINE Alu 1 266 -46 279 275 18 9 chr12 138337945 138338054 -5448401 + (TA)n Simple_repeat Simple_repeat 1 110 0 1208 261 22 67 chr12 138338054 138338559 -5447896 - MLT2B1 LTR ERVL -37 483 2 282 266 0 0 chr12 138338847 138338911 -5447544 + MER2 DNA MER2_type 282 345 0 813 293 40 47 chr12 138339215 138339639 -5446816 - L1MB8 LINE L1 -14 6164 5744 1528 223 6 14 chr12 138340351 138340705 -5445750 - L1MB8 LINE L1 -318 5860 5510 900 184 131 19 chr12 138341273 138341479 -5444976 + MER30 DNA MER1_type 2 230 0 1684 148 0 7 chr12 138342173 138342457 -5443998 - AluSx SINE Alu -17 295 14 341 355 13 0 chr12 138342460 138342615 -5443840 + MIR SINE MIR 98 254 -8 1858 296 55 26 chr12 138343196 138344031 -5442424 - L1MEc LINE L1 -5530 866 8 864 232 18 13 chr12 138344418 138344642 -5441813 + MER4E LTR ERV1 542 766 0 910 265 16 19 chr12 138344994 138345251 -5441204 - AluSx SINE Alu -19 293 38 924 155 0 7 chr12 138346677 138346832 -5439623 - L1PA8 LINE L1 -3 6169 6016 301 310 0 11 chr12 138347842 138347929 -5438526 - MLT1K LTR MaLR -358 230 145 6714 191 21 38 chr12 138348151 138349605 -5436850 - HERVE LTR ERV1 -5741 2072 643 5462 114 2 10 chr12 138349705 138350506 -5435949 + L1PA5 LINE L1 5349 6143 -11 546 291 0 14 chr12 138350581 138350791 -5435664 + AluSq SINE Alu 7 213 -100 497 297 105 9 chr12 138350958 138351237 -5435218 - MLT1G1 LTR MaLR -291 304 1 816 258 4 19 chr12 138353293 138353549 -5432906 - AluJo SINE Alu 0 312 61 909 238 0 21 chr12 138353893 138354174 -5432281 + AluSp SINE Alu 1 275 -38 2745 231 23 19 chr12 138354350 138355047 -5431408 + MER67C LTR ERV1 11 710 0 1835 161 0 0 chr12 138355614 138355888 -5430567 - AluSx SINE Alu -5 307 34 206 338 95 0 chr12 138356152 138356226 -5430229 + L2 LINE L2 3190 3270 -2 2744 186 25 63 chr12 138356271 138356907 -5429548 + LTR9 LTR ERV1 1 612 0 2001 262 31 19 chr12 138357232 138357850 -5428605 + L1MC4a LINE L1 7183 7807 -1 2006 118 25 0 chr12 138357854 138358176 -5428279 + AluSx SINE Alu 1 329 0 1530 164 0 12 chr12 138359943 138360199 -5426256 - AluJo SINE Alu 0 312 60 220 369 27 36 chr12 138360860 138360971 -5425484 + MIR SINE MIR 35 144 -118 607 304 150 26 chr12 138360984 138361323 -5425132 - L2 LINE L2 -21 3292 2912 2688 117 15 74 chr12 138361478 138361938 -5424517 - Tigger2a DNA MER2_type 0 434 2 5938 74 3 6 chr12 138362104 138362832 -5423623 - L1PA10 LINE L1 -4 6164 5439 383 222 71 0 chr12 138363342 138363441 -5423014 + MER69 DNA AcHobo 2015 2120 -406 * 632 263 111 4 chr12 138363430 138363692 -5422763 + MER69 DNA AcHobo 2233 2522 -4 267 281 76 42 chr12 138363991 138364148 -5422307 + MIR SINE MIR 52 220 -42 599 335 55 14 chr12 138364205 138364498 -5421957 + L2 LINE L2 3009 3313 0 2240 85 3 57 chr12 138364666 138364983 -5421472 - AluSq SINE Alu -13 300 1 284 212 0 0 chr12 138366074 138366140 -5420315 - MIR SINE MIR -118 144 79 406 342 7 13 chr12 138366140 138366289 -5420166 - MLT1K LTR MaLR -153 435 288 579 262 30 0 chr12 138366334 138366536 -5419919 + L1MC4 LINE L1 7686 7893 -149 2078 144 50 14 chr12 138366875 138367237 -5419218 + THE1C LTR MaLR 1 375 0 240 320 13 0 chr12 138367406 138367481 -5418974 + MIR SINE MIR 183 258 -4 348 24 0 0 chr12 138368640 138368681 -5417774 + (CA)n Simple_repeat Simple_repeat 2 42 0 1655 176 3 35 chr12 138369274 138369586 -5416869 + AluJo SINE Alu 1 302 -10 578 217 106 63 chr12 138369923 138370130 -5416325 - L1MC4 LINE L1 -1339 6703 6488 419 267 17 0 chr12 138370132 138370248 -5416207 - L1M4 LINE L1 -2286 3860 3743 286 109 0 0 chr12 138370253 138370299 -5416156 + MADE1 DNA Mariner 1 46 -34 498 206 20 41 chr12 138370304 138370450 -5416005 - L1M4 LINE L1 -2414 3732 3590 568 203 139 13 chr12 138370470 138370628 -5415827 + MER5A DNA MER1_type 7 184 -5 479 293 108 0 chr12 138370656 138370813 -5415642 + MER5B DNA MER1_type 4 177 -1 315 246 239 8 chr12 138370813 138370942 -5415513 - MIR SINE MIR -67 195 37 783 239 60 118 chr12 138372429 138372843 -5413612 + MLT1B LTR MaLR 1 390 0 2481 134 53 12 chr12 138373086 138373497 -5412958 - MSTA LTR MaLR 0 428 1 1535 254 44 0 chr12 138373576 138373918 -5412537 + MLT1A1 LTR MaLR 1 357 -8 387 136 34 80 chr12 138374252 138374340 -5412115 - MLT1A1 LTR MaLR -46 319 236 659 117 19 0 chr12 138374341 138374444 -5412011 - L1MA9 LINE L1 -188 6124 6020 300 294 141 45 chr12 138374433 138374787 -5411668 - L1MC4 LINE L1 -521 5600 5507 * 321 225 84 0 chr12 138375734 138375805 -5410650 - MSTA LTR MaLR -214 214 138 890 116 53 85 chr12 138375906 138376095 -5410360 - L1MA9 LINE L1 0 6312 6130 712 190 1 9 chr12 138376159 138376291 -5410164 - MLT1A1 LTR MaLR -5 500 236 1021 194 27 18 chr12 138376292 138376514 -5409941 - L1MA9 LINE L1 -188 6124 5901 1066 181 201 0 chr12 138376590 138376844 -5409611 + L1MB3 LINE L1 5879 6183 0 1943 169 21 1 chr12 138377378 138377893 -5408562 - L1P4 LINE L1 -673 5492 4967 3139 134 21 21 chr12 138377893 138378377 -5408078 + MER1A DNA MER1_type 1 484 -45 4162 224 15 13 chr12 138378569 138378869 -5407586 - L1P LINE L1 -877 5269 4971 2681 196 11 17 chr12 138378869 138379399 -5407056 + MER1A DNA MER1_type 1 527 0 4162 224 15 13 chr12 138379399 138380096 -5406359 - L1P LINE L1 -1175 4971 4270 4083 126 30 11 chr12 138380098 138380743 -5405712 + L1PA15 LINE L1 5504 6160 -5 260 241 54 84 chr12 138382305 138382471 -5403984 + MIR SINE MIR 40 200 -62 705 101 0 10 chr12 138382729 138382828 -5403627 + MER4A LTR ERV1 1 98 -566 1847 157 3 19 chr12 138382828 138383179 -5403276 + MER4A LTR ERV1 261 664 0 1444 227 30 51 chr12 138383335 138383767 -5402688 - L1MB8 LINE L1 -13 6165 5743 426 306 73 20 chr12 138384069 138384412 -5402043 - HAL1b LINE L1 0 1348 988 2187 52 84 25 chr12 138384422 138384708 -5401747 + AluY SINE Alu 1 303 -8 414 284 123 37 chr12 138384847 138385070 -5401385 - HAL1b LINE L1 -413 935 688 2114 144 47 8 chr12 138385070 138385431 -5401024 - THE1C LTR MaLR 0 375 1 414 284 123 37 chr12 138385431 138385450 -5401005 - HAL1b LINE L1 -660 688 672 1163 277 126 40 chr12 138385853 138386401 -5400054 - MLT1G1 LTR MaLR 0 595 1 2094 227 49 33 chr12 138387718 138388349 -5398106 - L1MB7 LINE L1 -60 6124 5484 530 281 49 42 chr12 138388622 138388928 -5397527 + L1MC4a LINE L1 5623 5930 -1878 304 270 79 0 chr12 138389087 138389176 -5397279 - L1MC4 LINE L1 -1334 6708 6613 196 200 31 0 chr12 138389176 138389241 -5397214 + (TA)n Simple_repeat Simple_repeat 1 67 0 311 178 0 109 chr12 138389260 138389361 -5397094 - L1MC4 LINE L1 -1339 6703 6614 592 178 6 22 chr12 138389372 138389552 -5396903 + (TA)n Simple_repeat Simple_repeat 2 178 0 382 226 0 29 chr12 138389579 138390102 -5396353 + (TA)n Simple_repeat Simple_repeat 1 507 0 319 251 23 0 chr12 138390130 138390395 -5396060 + (CATATA)n Simple_repeat Simple_repeat 1 271 0 217 246 0 27 chr12 138390397 138390580 -5395875 + (TA)n Simple_repeat Simple_repeat 2 179 0 217 246 0 27 chr12 138390607 138390790 -5395665 + (TA)n Simple_repeat Simple_repeat 2 179 0 233 217 0 0 chr12 138390803 138390863 -5395592 + L1MCa LINE L1 2007 2066 -4360 239 140 20 0 chr12 138390863 138390913 -5395542 + (TA)n Simple_repeat Simple_repeat 2 52 0 468 178 0 0 chr12 138392042 138392132 -5394323 + MIR SINE MIR 46 135 -127 300 269 56 42 chr12 138392529 138392730 -5393725 - MIR SINE MIR -49 213 12 213 338 0 0 chr12 138392663 138392740 -5393715 + MIR SINE MIR 75 151 -111 * 497 231 29 75 chr12 138393410 138393583 -5392872 + L1ME1 LINE L1 5308 5472 -694 1120 95 0 7 chr12 138393593 138393740 -5392715 + AluY SINE Alu 1 146 -165 25 0 0 0 chr12 138393748 138393773 -5392682 + AT_rich Low_complexity Low_complexity 1 25 0 1174 237 69 96 chr12 138393774 138394327 -5392128 + L1ME1 LINE L1 5490 6027 -139 1947 85 0 0 chr12 138394328 138394563 -5391892 - AluSx SINE Alu -14 298 64 22 0 0 0 chr12 138394586 138394608 -5391847 + AT_rich Low_complexity Low_complexity 1 22 0 2825 180 27 36 chr12 138394616 138395172 -5391283 - L1PA16 LINE L1 -37 6129 5579 510 266 60 40 chr12 138395935 138396032 -5390423 + MIR SINE MIR 6 100 -162 2192 154 22 0 chr12 138396032 138396388 -5390067 - THE1B LTR MaLR 0 364 1 510 266 60 40 chr12 138396388 138396538 -5389917 + MIR SINE MIR 100 258 -4 1611 187 59 126 chr12 138396787 138397328 -5389127 - MLT1D LTR MaLR 0 505 1 727 270 10 76 chr12 138397934 138398238 -5388217 + MLT1J LTR MaLR 226 509 -2 2696 48 0 0 chr12 138398389 138398700 -5387755 - AluY SINE Alu 0 311 1 256 307 0 30 chr12 138398825 138398926 -5387529 + MIR SINE MIR 140 237 -25 396 245 119 6 chr12 138399199 138399358 -5387097 - MIR SINE MIR -23 239 63 207 0 0 0 chr12 138399492 138399515 -5386940 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2316 99 0 0 chr12 138399518 138399812 -5386643 - AluSc SINE Alu -15 294 1 26 0 0 0 chr12 138399887 138399913 -5386542 + AT_rich Low_complexity Low_complexity 1 26 0 347 288 27 7 chr12 138400473 138400619 -5385836 + L2 LINE L2 1950 2098 -1216 286 289 53 18 chr12 138400617 138400731 -5385724 + L2 LINE L2 2950 3067 -246 * 250 302 134 13 chr12 138401412 138401561 -5384894 - LTR16C LTR ERVL -91 400 234 297 227 113 80 chr12 138401679 138401829 -5384626 - Charlie4 DNA MER1_type -1803 158 4 219 300 0 0 chr12 138401963 138402023 -5384432 - L2 LINE L2 -259 3054 2995 2115 129 0 19 chr12 138402402 138402720 -5383735 + AluSx SINE Alu 1 312 0 433 283 80 84 chr12 138402940 138403191 -5383264 + MLT1K LTR MaLR 333 582 -6 261 271 73 10 chr12 138403282 138403378 -5383077 - MIR3 SINE MIR -30 178 77 33 0 0 0 chr12 138403867 138403900 -5382555 + AT_rich Low_complexity Low_complexity 1 33 0 724 299 33 43 chr12 138404037 138404511 -5381944 - L2 LINE L2 -243 3029 2556 2695 78 13 19 chr12 138405374 138405748 -5380707 + THE1C LTR MaLR 1 372 -3 500 318 112 32 chr12 138405958 138406395 -5380060 - L1ME LINE L1 -303 5818 5347 738 299 24 33 chr12 138406490 138406821 -5379634 - L2 LINE L2 -4 3309 2982 429 198 0 0 chr12 138406821 138406932 -5379523 + (TA)n Simple_repeat Simple_repeat 1 111 0 1944 140 20 13 chr12 138406938 138407238 -5379217 - AluSx SINE Alu -10 302 1 615 210 65 54 chr12 138407631 138407817 -5378638 - MER20 DNA MER1_type 0 219 32 286 228 0 0 chr12 138408513 138408570 -5377885 + MER91B DNA MER1_type 102 158 -32 382 281 30 15 chr12 138409035 138409170 -5377285 - MER113 DNA MER1_type? -79 442 306 587 246 126 0 chr12 138409208 138409383 -5377072 - L1MD2 LINE L1 -9 6350 6154 339 306 9 26 chr12 138409980 138410208 -5376247 + CT-rich Low_complexity Low_complexity 1 223 0 787 112 28 17 chr12 138410402 138410580 -5375875 + CT-rich Low_complexity Low_complexity 1 180 0 362 321 32 54 chr12 138410728 138411043 -5375412 + L2 LINE L2 2839 3146 -167 26 0 0 0 chr12 138411392 138411418 -5375037 + AT_rich Low_complexity Low_complexity 1 26 0 2182 116 0 3 chr12 138411427 138411730 -5374725 - AluSx SINE Alu -10 302 1 7336 50 20 0 chr12 138411790 138412741 -5373714 - L1PA6 LINE L1 0 6154 5199 2333 85 0 13 chr12 138412888 138413193 -5373262 - AluY SINE Alu -10 301 1 271 382 15 7 chr12 138413882 138414018 -5372437 + L2 LINE L2 3136 3272 0 236 200 0 0 chr12 138414279 138414334 -5372121 + L1MD2 LINE L1 6105 6159 -200 1153 96 11 0 chr12 138414500 138414678 -5371777 + (GA)n Simple_repeat Simple_repeat 1 180 0 261 156 0 0 chr12 138415382 138415427 -5371028 - MIR SINE MIR -13 249 205 200 139 0 23 chr12 138415429 138415472 -5370983 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 399 279 71 0 chr12 138415518 138415658 -5370797 - L2 LINE L2 0 3272 3123 717 164 15 24 chr12 138415972 138416311 -5370144 + GA-rich Low_complexity Low_complexity 1 336 0 249 305 26 44 chr12 138416339 138416486 -5369969 + MIR SINE MIR 33 179 -71 1393 141 161 16 chr12 138417651 138417770 -5368685 + AluJo SINE Alu 1 101 -201 216 0 0 0 chr12 138417770 138417794 -5368661 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1393 141 161 16 chr12 138417794 138417929 -5368526 + AluJo SINE Alu 101 292 -10 333 155 0 0 chr12 138417929 138417987 -5368468 + GA-rich Low_complexity Low_complexity 1 58 0 261 0 0 0 chr12 138418051 138418080 -5368375 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2060 103 11 4 chr12 138418082 138418363 -5368092 - AluSq SINE Alu -30 283 1 850 82 8 15 chr12 138419215 138419349 -5367106 + (TTTC)n Simple_repeat Simple_repeat 3 135 0 2098 118 0 0 chr12 138419354 138419633 -5366822 - AluSx SINE Alu -33 279 1 289 336 15 0 chr12 138419807 138419938 -5366517 + CT-rich Low_complexity Low_complexity 2 134 0 * 377 292 30 6 chr12 138419861 138420029 -5366426 + (TCTCTG)n Simple_repeat Simple_repeat 3 174 0 225 280 27 0 chr12 138420045 138420120 -5366335 + (TCTCTG)n Simple_repeat Simple_repeat 3 79 0 1478 230 80 42 chr12 138420779 138421255 -5365200 - MLT1D LTR MaLR 0 505 1 749 225 18 35 chr12 138421346 138421515 -5364940 + MLT1A2 LTR MaLR 3 168 -206 705 121 186 0 chr12 138421524 138421648 -5364807 + MLT1A2 LTR MaLR 282 428 0 208 272 41 36 chr12 138421699 138421870 -5364585 - MIR3 SINE MIR -89 173 3 959 243 72 72 chr12 138423640 138424031 -5362424 - MLT2C1 LTR ERVL 0 397 7 196 292 0 21 chr12 138424185 138424233 -5362222 - L2 LINE L2 -18 3295 3249 227 250 190 50 chr12 138424466 138424566 -5361889 + L2 LINE L2 3158 3271 -1 328 343 34 7 chr12 138425270 138425416 -5361039 + MIR SINE MIR 8 157 -105 191 320 290 0 chr12 138425887 138425987 -5360468 + L2 LINE L2 3144 3272 0 616 265 64 25 chr12 138426316 138426520 -5359935 - MIR SINE MIR -21 241 30 565 172 0 30 chr12 138427000 138427099 -5359356 + FLAM_C SINE Alu 33 128 -15 742 265 135 89 chr12 138427106 138427623 -5358832 - MLT1K LTR MaLR -15 573 33 1276 214 57 0 chr12 138428106 138428424 -5358031 - MER45B DNA AcHobo 0 1040 705 2087 121 13 0 chr12 138428433 138428739 -5357716 - AluSx SINE Alu -2 310 1 2222 269 56 41 chr12 138428739 138429888 -5356567 - L1M4c LINE L1 -2572 4072 2963 1859 129 0 4 chr12 138429888 138430151 -5356304 + AluSx SINE Alu 34 295 -17 2222 269 56 41 chr12 138430151 138430454 -5356001 - L1M4c LINE L1 -3681 2963 2666 432 245 7 82 chr12 138430455 138430602 -5355853 - L1M4c LINE L1 -4645 2001 1866 788 244 0 56 chr12 138430644 138430878 -5355577 - L1M4c LINE L1 -5479 1063 843 2132 123 3 0 chr12 138430880 138431172 -5355283 + AluSx SINE Alu 5 297 -15 207 0 0 0 chr12 138431175 138431198 -5355257 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 469 267 111 6 chr12 138431311 138431491 -5354964 + MIR SINE MIR 41 239 -23 230 246 0 43 chr12 138431759 138431828 -5354627 - MIR SINE MIR -20 242 177 293 271 73 10 chr12 138432124 138432220 -5354235 + MIR3 SINE MIR 77 178 -30 444 283 80 84 chr12 138432311 138432562 -5353893 - MLT1K LTR MaLR -6 582 333 2066 132 0 19 chr12 138432782 138433100 -5353355 - AluSx SINE Alu 0 312 1 302 227 113 80 chr12 138433673 138433823 -5352632 + Charlie4 DNA MER1_type 4 158 -1803 269 295 134 13 chr12 138433941 138434090 -5352365 + LTR16C LTR ERVL 234 400 -91 389 310 74 15 chr12 138434771 138435029 -5351426 - L2 LINE L2 -246 3067 1950 26 0 0 0 chr12 138435589 138435615 -5350840 + AT_rich Low_complexity Low_complexity 1 26 0 2282 101 0 35 chr12 138435689 138436006 -5350449 + AluSg SINE Alu 1 306 -4 305 205 123 57 chr12 138437099 138437221 -5349234 - MER117 DNA MER1_type -54 143 14 354 310 102 39 chr12 138437410 138437512 -5348943 + MER102b DNA MER1_type 1 95 -1333 1238 71 0 7 chr12 138437512 138437667 -5348788 + L1PA8 LINE L1 6016 6169 -3 354 310 102 39 chr12 138437667 138437848 -5348607 + MER102b DNA MER1_type 95 302 -39 2484 59 0 31 chr12 138438421 138438742 -5347713 - AluY SINE Alu 0 311 1 2078 119 3 3 chr12 138438744 138439038 -5347417 - AluSx SINE Alu -18 294 1 2078 207 20 7 chr12 138439078 138439518 -5346937 - L1MB8 LINE L1 -236 5942 5497 187 361 68 30 chr12 138439902 138440035 -5346420 - L2 LINE L2 -18 3295 3158 1316 114 134 0 chr12 138440073 138440275 -5346180 + MER30 DNA MER1_type 2 230 0 2742 134 25 31 chr12 138440459 138441072 -5345383 + MER4E LTR ERV1 1 766 0 2037 136 10 0 chr12 138441410 138441712 -5344743 - AluSg SINE Alu -5 305 1 1576 283 36 21 chr12 138441754 138442359 -5344096 + L1MC4a LINE L1 7180 7793 -15 334 207 0 18 chr12 138442546 138442657 -5343798 + (TA)n Simple_repeat Simple_repeat 2 110 0 270 115 16 49 chr12 138442859 138442920 -5343535 + (TAA)n Simple_repeat Simple_repeat 1 59 0 1443 294 43 32 chr12 138442923 138443573 -5342882 - L1MEc LINE L1 -5473 1352 696 364 98 0 0 chr12 138444112 138444163 -5342292 + AluY SINE Alu 172 222 -79 556 99 0 0 chr12 138444163 138444234 -5342221 - AluY SINE Alu -197 114 44 3306 126 32 16 chr12 138444266 138444758 -5341697 - L1PA15 LINE L1 -14 6151 5652 1478 252 25 31 chr12 138444758 138445463 -5340992 - L1MEc LINE L1 -5707 835 30 301 356 108 21 chr12 138446548 138446966 -5339489 - MLT1K LTR MaLR -1 587 134 547 334 28 9 chr12 138447152 138447404 -5339051 - MIR SINE MIR -1 261 5 188 318 106 0 chr12 138447419 138447504 -5338951 + MIR SINE MIR 42 135 -73 247 328 59 17 chr12 138448723 138448842 -5337613 + MIR SINE MIR 21 144 -118 240 227 0 15 chr12 138449495 138449561 -5336894 + A-rich Low_complexity Low_complexity 3 67 0 839 195 31 36 chr12 138450220 138450415 -5336040 - MER20 DNA MER1_type -25 194 1 2984 176 22 61 chr12 138450798 138451435 -5335020 - LTR9 LTR ERV1 0 612 1 206 338 95 0 chr12 138451480 138451554 -5334901 - L2 LINE L2 -2 3270 3190 1988 131 0 0 chr12 138451818 138452092 -5334363 + AluSx SINE Alu 34 307 -5 2756 132 25 32 chr12 138452431 138453045 -5333410 - MER4E LTR ERV1 0 766 1 1259 117 126 15 chr12 138453229 138453435 -5333020 - MER30 DNA MER1_type 0 230 2 187 361 68 30 chr12 138453473 138453606 -5332849 + L2 LINE L2 3158 3295 -18 2093 218 22 8 chr12 138453982 138454470 -5331985 + L1MB8 LINE L1 5486 5935 -243 2238 109 0 0 chr12 138454470 138454764 -5331691 + AluSx SINE Alu 1 294 -18 2085 106 0 31 chr12 138454785 138455077 -5331378 + AluSg SINE Alu 11 293 -17 305 205 123 57 chr12 138456170 138456292 -5330163 - MER117 DNA MER1_type -54 143 14 354 316 66 35 chr12 138456481 138456583 -5329872 + Charlie8 DNA MER1_type 1 98 -243 1238 71 0 7 chr12 138456583 138456738 -5329717 + L1PA8 LINE L1 6016 6169 -3 354 316 66 35 chr12 138456738 138456891 -5329564 + Charlie8 DNA MER1_type 98 264 -77 2619 111 8 3 chr12 138458177 138458530 -5327925 + THE1A LTR MaLR 1 355 0 3613 189 20 11 chr12 138458863 138459561 -5326894 - MER67C LTR ERV1 0 710 7 2146 95 4 0 chr12 138459733 138460007 -5326448 - AluSp SINE Alu -38 275 1 254 292 37 50 chr12 138460209 138460370 -5326085 - L2 LINE L2 -144 3169 3011 552 277 167 24 chr12 138460370 138460753 -5325702 - MLT1L LTR MaLR 0 615 178 212 245 57 0 chr12 138460921 138460974 -5325481 - L2 LINE L2 -329 2984 2929 298 386 25 28 chr12 138460982 138461376 -5325079 + ERVL LTR ERVL 2397 2789 -2975 1987 190 11 16 chr12 138461864 138462228 -5324227 + MLT1A1 LTR MaLR 1 362 -3 415 280 104 34 chr12 138462870 138463138 -5323317 - L2 LINE L2 -779 2535 2249 3850 131 68 12 chr12 138463402 138464758 -5321697 - L1PA13 LINE L1 -10 6153 4551 228 86 0 0 chr12 138465250 138465285 -5321170 + (CA)n Simple_repeat Simple_repeat 2 36 0 404 283 8 0 chr12 138465952 138466072 -5320383 + MIR SINE MIR 86 206 -56 346 358 57 6 chr12 138466266 138466442 -5320013 + MIR SINE MIR 16 200 -62 2075 100 50 0 chr12 138466517 138466796 -5319659 - AluSq SINE Alu -20 293 1 4275 211 58 42 chr12 138466828 138467987 -5318468 - L1MC3 LINE L1 -229 7556 6380 745 90 0 0 chr12 138468001 138468090 -5318365 - AluSg/x SINE Alu -17 295 207 236 163 23 0 chr12 138468090 138468133 -5318322 + LTR21A LTR ERV1 3 46 -459 1881 129 100 86 chr12 138468133 138468577 -5317878 + LTR21A LTR ERV1 13 421 -17 522 167 60 0 chr12 138468577 138468661 -5317794 - AluSc SINE Alu -76 233 145 263 211 0 0 chr12 138468661 138468713 -5317742 + LTR30 LTR ERV1 1 52 -670 336 123 77 5 chr12 138468713 138468781 -5317674 + LTR12 LTR ERV1 187 234 -480 344 246 34 17 chr12 138468866 138468984 -5317471 + LTR30 LTR ERV1 524 643 -79 677 140 0 0 chr12 138468986 138469086 -5317369 + LTR12 LTR ERV1 615 714 0 23109 109 10 12 chr12 138469105 138474936 -5311519 + HERV9 LTR ERV1 54 5954 -2445 7623 96 5 18 chr12 138474923 138475992 -5310463 + HERV9 LTR ERV1 7345 8399 0 * 265 211 0 0 chr12 138475992 138476044 -5310411 + LTR30 LTR ERV1 1 52 -670 855 137 44 109 chr12 138476044 138476292 -5310163 + LTR12 LTR ERV1 53 284 -430 305 220 33 22 chr12 138476293 138476384 -5310071 + LTR30 LTR ERV1 552 643 -79 442 153 212 0 chr12 138476385 138476470 -5309985 + LTR12 LTR ERV1 481 583 -131 626 185 15 23 chr12 138476485 138476615 -5309840 - FLAM_C SINE Alu -2 131 3 272 346 10 0 chr12 138476684 138476788 -5309667 - MIR SINE MIR -53 209 105 644 256 5 50 chr12 138476842 138476977 -5309478 - MER58A DNA MER1_type -2202 218 93 3056 97 12 0 chr12 138476977 138477400 -5309055 + L1PA13 LINE L1 5736 6163 0 644 256 5 50 chr12 138477400 138477463 -5308992 - MER58A DNA MER1_type -2327 93 29 792 83 9 0 chr12 138477633 138477742 -5308713 - HY1 scRNA scRNA -2 110 1 2147 127 0 10 chr12 138477916 138478224 -5308231 - AluSx SINE Alu -7 305 1 305 245 140 56 chr12 138478580 138478723 -5307732 + Charlie8 DNA MER1_type 19 173 -2244 191 350 38 56 chr12 138479574 138479669 -5306786 - MIR SINE MIR -1 261 169 4714 176 82 35 chr12 138479669 138480643 -5305812 - LTR28 LTR ERV1 0 1020 1 191 350 38 56 chr12 138480643 138480707 -5305748 - MIR SINE MIR -93 169 105 764 260 53 10 chr12 138480761 138480969 -5305486 - MER58A DNA MER1_type -6 218 2 869 150 46 0 chr12 138481238 138481411 -5305044 - LTR36 LTR ERV1 -430 181 1 630 202 28 28 chr12 138481447 138481625 -5304830 - MER5B DNA MER1_type 0 178 1 3169 93 7 7 chr12 138481804 138482246 -5304209 + MER41B LTR ERV1 1 442 -193 3436 128 55 43 chr12 138483010 138483613 -5302842 - MER4B LTR ERV1 0 610 1 355 246 194 19 chr12 138484538 138484749 -5301706 - MER2 DNA MER2_type 0 345 98 854 167 7 0 chr12 138484767 138484905 -5301550 - MER2 DNA MER2_type -201 144 6 1970 137 3 0 chr12 138485969 138486268 -5300187 - L1PA14 LINE L1 -5 6156 5857 382 257 18 9 chr12 138488732 138488841 -5297614 - L1 LINE L1 -991 5155 5046 191 103 26 0 chr12 138488854 138488893 -5297562 + A-rich Low_complexity Low_complexity 4 43 0 545 144 10 0 chr12 138490269 138490373 -5296082 + (TG)n Simple_repeat Simple_repeat 2 106 0 480 282 23 11 chr12 138490396 138490570 -5295885 + (TG)n Simple_repeat Simple_repeat 1 176 0 22 56 0 0 chr12 138491655 138491691 -5294764 + AT_rich Low_complexity Low_complexity 1 36 0 758 283 62 103 chr12 138493886 138494437 -5292018 - MER77 LTR ERV1 -17 588 61 223 317 135 0 chr12 138494893 138494997 -5291458 - MIR SINE MIR -64 144 27 26 30 0 0 chr12 138496405 138496438 -5290017 + AT_rich Low_complexity Low_complexity 1 33 0 282 349 30 44 chr12 138496655 138496950 -5289505 - MLT1L LTR MaLR -122 493 203 1804 132 8 0 chr12 138497331 138497618 -5288837 - AluSx SINE Alu 0 318 30 525 222 45 40 chr12 138498555 138498731 -5287724 + MLT1L LTR MaLR 93 269 -346 638 292 29 47 chr12 138499091 138499365 -5287090 + MER113 DNA MER1_type? 250 518 -3 685 226 55 120 chr12 138499881 138499914 -5286541 + MER113 DNA MER1_type? 2 36 -485 1995 93 65 17 chr12 138499914 138500205 -5286250 - AluSx SINE Alu -3 309 5 685 226 55 120 chr12 138500205 138500582 -5285873 + MER113 DNA MER1_type? 36 375 -146 2346 125 54 65 chr12 138500582 138501046 -5285409 + LTR46 LTR ERV1 2 460 0 685 226 55 120 chr12 138501046 138501144 -5285311 + MER113 DNA MER1_type? 375 478 -43 515 267 28 65 chr12 138501209 138501345 -5285110 + MLT1L LTR MaLR 111 236 -379 2800 87 19 0 chr12 138501345 138501715 -5284740 + MER51B LTR ERV1 1 377 0 515 267 28 65 chr12 138501715 138501825 -5284630 + MLT1L LTR MaLR 236 348 -267 309 26 0 0 chr12 138501922 138501960 -5284495 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2169 83 14 11 chr12 138501962 138502240 -5284215 - AluY SINE Alu -31 280 2 2771 96 30 10 chr12 138502334 138502728 -5283727 - MER4A LTR ERV1 0 664 263 560 174 0 0 chr12 138502728 138502826 -5283629 - MER4A LTR ERV1 -566 98 1 308 256 104 95 chr12 138503006 138503217 -5283238 - MLT2E LTR ERVL 0 628 416 1923 163 0 0 chr12 138503387 138503676 -5282779 + AluSx SINE Alu 1 289 -23 665 216 105 0 chr12 138503847 138504000 -5282455 + MLT1A2 LTR MaLR 1 169 -205 980 190 23 46 chr12 138504000 138504216 -5282239 + L1PB4 LINE L1 5946 6156 0 1073 174 9 39 chr12 138504219 138504449 -5282006 + MLT1A2 LTR MaLR 152 374 0 253 284 0 14 chr12 138504704 138504778 -5281677 + GA-rich Low_complexity Low_complexity 3 75 0 2057 134 7 16 chr12 138504886 138505020 -5281435 + AluSq SINE Alu 1 135 -178 2285 89 0 0 chr12 138505020 138505351 -5281104 + AluY SINE Alu 1 331 0 2057 134 7 16 chr12 138505351 138505520 -5280935 + AluSq SINE Alu 135 303 -10 247 291 115 20 chr12 138507578 138507726 -5278729 + MLT1I LTR MaLR 233 394 -15 2797 130 12 7 chr12 138508088 138508520 -5277935 + MER57B LTR ERV1 1 434 0 1362 201 94 18 chr12 138509059 138509398 -5277057 - MLT1A1 LTR MaLR 0 365 1 554 284 44 5 chr12 138509667 138509871 -5276584 - MIR SINE MIR 0 262 51 269 307 35 44 chr12 138510108 138510222 -5276233 + MIR SINE MIR 33 145 -117 488 259 50 50 chr12 138510341 138510603 -5275852 + L2 LINE L2 3027 3288 -25 225 316 70 26 chr12 138511346 138511460 -5274995 + MIR SINE MIR 119 237 -25 2137 135 44 14 chr12 138511654 138512018 -5274437 - THE1C LTR MaLR 0 375 1 230 272 51 82 chr12 138513384 138513542 -5272913 + LTR16B LTR ERVL 57 209 -255 2086 159 43 42 chr12 138513630 138514181 -5272274 + MLT2A2 LTR ERVL 1 554 0 340 297 86 19 chr12 138514304 138514513 -5271942 + Charlie8 DNA MER1_type 56 278 -2139 192 155 17 69 chr12 138515619 138515677 -5270778 - L2 LINE L2 -894 2420 2366 784 188 13 7 chr12 138515710 138515864 -5270591 + MLT1D LTR MaLR 1 155 -350 618 173 237 17 chr12 138515866 138516039 -5270416 + MSTA LTR MaLR 1 211 -215 279 280 8 17 chr12 138516040 138516158 -5270297 + C-rich Low_complexity Low_complexity 1 117 0 183 42 0 0 chr12 138516173 138516197 -5270258 + (CCCGA)n Simple_repeat Simple_repeat 1 24 0 1422 104 30 30 chr12 138516197 138516417 -5270038 + MSTA LTR MaLR 206 428 0 787 211 89 28 chr12 138516417 138516626 -5269829 + MLT1D LTR MaLR 151 346 -159 2385 100 0 0 chr12 138516626 138516937 -5269518 + AluSx SINE Alu 1 311 -1 787 211 89 28 chr12 138516937 138516955 -5269500 + MLT1D LTR MaLR 346 361 -144 369 0 0 0 chr12 138516955 138516996 -5269459 + (TG)n Simple_repeat Simple_repeat 2 42 0 787 211 89 28 chr12 138516996 138517042 -5269413 + MLT1D LTR MaLR 361 497 -8 609 297 10 0 chr12 138517219 138517414 -5269041 - MIR SINE MIR -64 198 2 2197 112 0 10 chr12 138517708 138518012 -5268443 - AluSx SINE Alu -11 301 1 2303 104 27 0 chr12 138520530 138520827 -5265628 - AluSx SINE Alu -7 305 1 206 297 50 30 chr12 138520986 138521087 -5265368 + MIR SINE MIR 51 153 -55 330 232 30 20 chr12 138521172 138521271 -5265184 - MER103 DNA DNA -21 145 46 1076 223 65 29 chr12 138521390 138521782 -5264673 - MLT1C LTR MaLR 0 467 1 331 288 9 9 chr12 138522243 138522354 -5264101 + L2 LINE L2 3203 3313 0 307 297 62 23 chr12 138522818 138522946 -5263509 + MLT1K LTR MaLR 119 251 -337 2296 52 0 31 chr12 138524396 138524682 -5261773 + AluY SINE Alu 35 311 0 1831 168 0 33 chr12 138524704 138525008 -5261447 + AluJo SINE Alu 6 299 -13 372 88 0 0 chr12 138525180 138525237 -5261218 + (TG)n Simple_repeat Simple_repeat 2 58 0 216 295 95 11 chr12 138525543 138525638 -5260817 + L2 LINE L2 3169 3271 -1 2072 128 31 0 chr12 138526657 138526946 -5259509 + AluSx SINE Alu 1 298 -14 488 132 0 0 chr12 138526946 138527022 -5259433 - MADE1 DNA Mariner -4 76 1 25 51 0 0 chr12 138527048 138527087 -5259368 + AT_rich Low_complexity Low_complexity 1 39 0 276 298 80 60 chr12 138527744 138527895 -5258560 + MIR SINE MIR 53 206 -56 32 26 0 0 chr12 138528038 138528077 -5258378 + AT_rich Low_complexity Low_complexity 1 39 0 980 230 16 54 chr12 138528421 138528738 -5257717 + MER52A LTR ERV1 666 970 -785 656 186 117 27 chr12 138528725 138528913 -5257542 + MER52A LTR ERV1 1092 1296 -459 * 284 268 142 75 chr12 138528979 138529218 -5257237 + MER52A LTR ERV1 1216 1470 -285 426 258 12 61 chr12 138529224 138529387 -5257068 + MER52A LTR ERV1 1601 1755 0 24 0 0 0 chr12 138529434 138529458 -5256997 + AT_rich Low_complexity Low_complexity 1 24 0 1722 189 14 7 chr12 138529484 138529781 -5256674 + AluJo SINE Alu 1 299 -13 35 24 0 0 chr12 138530554 138530596 -5255859 + AT_rich Low_complexity Low_complexity 1 42 0 348 150 54 7 chr12 138531221 138531368 -5255087 + (TTATA)n Simple_repeat Simple_repeat 4 157 0 263 69 80 57 chr12 138531386 138531561 -5254894 + (TA)n Simple_repeat Simple_repeat 2 180 0 467 203 28 28 chr12 138531571 138531748 -5254707 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 918 172 12 2 chr12 138531875 138533239 -5253216 + ALR/Alpha Satellite centromeric 1 1377 -49 1042 171 3 4 chr12 138533351 138534549 -5251906 + ALR/Alpha Satellite centromeric 1 1196 0 988 162 4 7 chr12 138534649 138535696 -5250759 + ALR/Alpha Satellite centromeric 1 1043 -74 890 188 5 1 chr12 138535796 138537398 -5249057 + ALR/Alpha Satellite centromeric 1 1608 -27 992 164 6 3 chr12 138537499 138539059 -5247396 + ALR/Alpha Satellite centromeric 1 1565 -4 1067 158 2 0 chr12 138539161 138540341 -5246114 + ALR/Alpha Satellite centromeric 1 1182 -36 244 210 16 16 chr12 138540458 138540520 -5245935 + (TA)n Simple_repeat Simple_repeat 2 63 0 207 0 0 0 chr12 138540520 138540543 -5245912 + (CA)n Simple_repeat Simple_repeat 2 24 0 2172 48 34 7 chr12 138541763 138542057 -5244398 + AluY SINE Alu 1 302 -9 477 233 8 8 chr12 138543019 138543139 -5243316 - MER58B DNA MER1_type 0 341 222 22 0 0 0 chr12 138543379 138543401 -5243054 + AT_rich Low_complexity Low_complexity 1 22 0 255 254 14 0 chr12 138543580 138543651 -5242804 + MLT1A2 LTR MaLR 1 72 -302 422 254 40 40 chr12 138543687 138543864 -5242591 + MLT1A2 LTR MaLR 57 233 -141 194 128 26 0 chr12 138544782 138544821 -5241634 + (CA)n Simple_repeat Simple_repeat 1 40 0 507 313 61 18 chr12 138545705 138546098 -5240357 - LTR16B LTR ERVL 0 464 55 757 298 40 35 chr12 138546607 138546879 -5239576 - HERV16 LTR ERVL -2622 2374 2098 2133 178 137 21 chr12 138546879 138547412 -5239043 + LTR49 LTR ERV1 1 595 0 757 298 40 35 chr12 138547412 138547512 -5238943 - HERV16 LTR ERVL -2898 2098 2000 1997 114 14 7 chr12 138547740 138548062 -5238393 - AluSc SINE Alu 0 309 1 400 338 55 44 chr12 138548095 138548883 -5237572 - HERV16 LTR ERVL -3420 1576 740 1439 248 34 42 chr12 138549189 138549680 -5236775 + L1MB8 LINE L1 5625 6113 -65 2036 106 46 3 chr12 138549680 138549963 -5236492 - AluSx SINE Alu -17 295 1 1439 248 34 42 chr12 138549963 138550023 -5236432 + L1MB8 LINE L1 6113 6172 -6 316 289 201 8 chr12 138550800 138551039 -5235416 - LTR33A LTR ERVL -14 509 225 180 111 0 0 chr12 138551920 138551947 -5234508 + (CAA)n Simple_repeat Simple_repeat 3 29 0 1318 193 0 0 chr12 138552002 138552230 -5234225 - AluJb SINE Alu 0 312 85 208 322 85 17 chr12 138553027 138553145 -5233310 + MIR SINE MIR 131 256 -6 841 297 31 3 chr12 138554440 138554763 -5231692 + L1ME1 LINE L1 37 368 -6028 524 271 202 41 chr12 138554764 138555126 -5231329 + L1ME1 LINE L1 4984 5403 -812 2586 54 0 6 chr12 138555144 138555457 -5230998 + AluY SINE Alu 1 311 0 2345 252 27 28 chr12 138555463 138556241 -5230214 + L1ME1 LINE L1 5453 6229 -6 231 200 0 29 chr12 138557170 138557240 -5229215 - L1ME4a LINE L1 -4 6117 6050 24 32 0 0 chr12 138557670 138557701 -5228754 + AT_rich Low_complexity Low_complexity 1 31 0 2424 100 0 3 chr12 138557721 138558031 -5228424 + AluSq SINE Alu 1 309 -4 341 273 93 93 chr12 138558187 138558253 -5228202 - MLT1I LTR MaLR 0 409 344 767 241 82 14 chr12 138558253 138558460 -5227995 + MER58A DNA MER1_type 3 223 -1 341 273 93 93 chr12 138558460 138558760 -5227695 - MLT1I LTR MaLR -64 345 43 260 143 48 0 chr12 138558936 138558978 -5227477 - L2 LINE L2 -96 3217 3174 236 231 31 56 chr12 138560018 138560178 -5226277 - L1MEc LINE L1 -2946 3269 3114 729 253 31 3 chr12 138560216 138560505 -5225950 - L1MEc LINE L1 -3603 2612 2316 1096 280 74 27 chr12 138560542 138561396 -5225059 - L1MEc LINE L1 -4023 2373 1480 1275 111 34 14 chr12 138561398 138561605 -5224850 - AluSg/x SINE Alu -14 298 88 387 302 162 20 chr12 138561608 138562052 -5224403 - L1MEc LINE L1 -4937 1459 953 184 102 41 20 chr12 138562061 138562110 -5224345 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 41 0 0 0 chr12 138562208 138562249 -5224206 + AT_rich Low_complexity Low_complexity 1 41 0 183 145 16 32 chr12 138562255 138562317 -5224138 + (TA)n Simple_repeat Simple_repeat 2 62 0 234 232 0 63 chr12 138562341 138562436 -5224019 - L1MEc LINE L1 -5484 912 824 290 264 64 50 chr12 138562470 138562610 -5223845 + MLT1H1 LTR MaLR 386 527 -28 398 351 13 13 chr12 138562852 138563006 -5223449 - MIR3 SINE MIR -1 207 54 451 217 0 33 chr12 138563356 138563536 -5222919 + (ATGGTG)n Simple_repeat Simple_repeat 5 178 0 268 261 0 0 chr12 138563538 138563603 -5222852 + (TGG)n Simple_repeat Simple_repeat 1 65 0 23 33 0 0 chr12 138563959 138563989 -5222466 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr12 138564073 138564107 -5222348 + (TG)n Simple_repeat Simple_repeat 2 35 0 448 305 52 14 chr12 138565339 138565549 -5220906 + LTR16B LTR ERVL 245 462 -2 228 240 0 0 chr12 138566097 138566147 -5220308 + MLT1J LTR MaLR 348 397 -114 2110 120 3 3 chr12 138566946 138567295 -5219160 + AluSg SINE Alu 1 349 0 210 265 0 0 chr12 138567601 138567669 -5218786 + (TA)n Simple_repeat Simple_repeat 1 68 0 341 225 0 0 chr12 138568118 138568189 -5218266 - AluJ/FLAM SINE Alu -231 71 1 192 239 22 0 chr12 138568392 138568438 -5218017 - MIR SINE MIR -108 154 108 591 305 41 11 chr12 138568766 138569038 -5217417 + L1MC/D LINE L1 1 259 -5786 1675 251 22 36 chr12 138569122 138569707 -5216748 + L1MC/D LINE L1 4056 4632 -1932 2367 85 0 3 chr12 138569777 138570082 -5216373 - AluY SINE Alu -7 304 1 473 241 128 0 chr12 138570122 138570387 -5216068 + L1MC/D LINE L1 4804 5102 -1462 195 129 0 0 chr12 138570391 138570422 -5216033 + (GGA)n Simple_repeat Simple_repeat 3 33 0 712 149 0 43 chr12 138570439 138570627 -5215828 + (GGA)n Simple_repeat Simple_repeat 1 180 0 750 260 8 16 chr12 138570629 138570879 -5215576 + L1MC/D LINE L1 5110 5357 -1207 2315 205 31 20 chr12 138570888 138571596 -5214859 + L1MC/D LINE L1 5509 6224 -538 1880 235 56 33 chr12 138571596 138572205 -5214250 + L1MD2 LINE L1 5713 6335 -24 605 14 14 0 chr12 138572369 138572443 -5214012 + (TG)n Simple_repeat Simple_repeat 2 76 0 405 321 70 25 chr12 138573556 138573799 -5212656 + MIR SINE MIR 8 261 -1 225 0 0 0 chr12 138573936 138573961 -5212494 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1802 139 7 24 chr12 138573963 138574251 -5212204 - AluJo SINE Alu -29 283 1 222 62 0 0 chr12 138574303 138574335 -5212120 + (TG)n Simple_repeat Simple_repeat 1 32 0 1805 94 4 20 chr12 138574392 138574646 -5211809 - AluSx SINE Alu -13 299 50 257 316 32 0 chr12 138574667 138574762 -5211693 - L1MC4a LINE L1 -1884 5924 5827 1624 257 12 39 chr12 138575605 138575859 -5210596 - LTR53 LTR ERVL -8 511 275 2820 81 3 3 chr12 138575859 138576217 -5210238 - THE1B LTR MaLR -3 361 4 1624 257 12 39 chr12 138576217 138576453 -5210002 - LTR53 LTR ERVL -244 275 34 2239 126 0 0 chr12 138576506 138576815 -5209640 - AluSc SINE Alu 0 309 1 483 273 59 24 chr12 138577592 138577845 -5208610 + MER113 DNA MER1_type? 8 269 -252 1856 150 13 19 chr12 138578032 138578339 -5208116 + AluJo SINE Alu 1 305 -7 183 27 54 27 chr12 138578592 138578629 -5207826 + (TTA)n Simple_repeat Simple_repeat 1 38 0 234 222 208 0 chr12 138579062 138579134 -5207321 + L1MC4 LINE L1 6616 6702 -1340 261 232 0 0 chr12 138579141 138579210 -5207245 + (TA)n Simple_repeat Simple_repeat 2 70 0 447 19 0 0 chr12 138579223 138579275 -5207180 + (TG)n Simple_repeat Simple_repeat 2 53 0 1992 122 10 35 chr12 138579323 138579635 -5206820 + AluSc SINE Alu 1 304 -5 252 280 144 0 chr12 138579698 138579823 -5206632 + MIR SINE MIR 109 251 -11 314 247 45 11 chr12 138579929 138580018 -5206437 + LTR33 LTR ERVL 52 143 -378 299 278 33 0 chr12 138580235 138580325 -5206130 - MIR SINE MIR -122 140 48 24 0 0 0 chr12 138580451 138580475 -5205980 + AT_rich Low_complexity Low_complexity 1 24 0 2193 103 0 0 chr12 138580565 138580877 -5205578 - AluSg SINE Alu 0 314 3 180 125 0 0 chr12 138580946 138580978 -5205477 + (ATG)n Simple_repeat Simple_repeat 2 33 0 391 302 23 29 chr12 138580994 138581166 -5205289 - MIR SINE MIR -19 243 73 270 232 63 11 chr12 138581182 138581277 -5205178 - MIR SINE MIR -90 172 73 263 188 75 12 chr12 138581308 138581388 -5205067 - MIR SINE MIR -105 157 73 2272 108 3 0 chr12 138581667 138581962 -5204493 + AluSx SINE Alu 1 296 -16 604 274 47 0 chr12 138583581 138583771 -5202684 + MLT1I LTR MaLR 195 393 -16 617 271 11 6 chr12 138583776 138583957 -5202498 - MER5A DNA MER1_type -6 183 2 209 280 0 0 chr12 138584018 138584068 -5202387 + (CAT)n Simple_repeat Simple_repeat 3 52 0 2175 94 41 89 chr12 138584638 138584844 -5201611 - THE1C LTR MaLR 0 375 161 1710 89 119 0 chr12 138584844 138585079 -5201376 + AluSg SINE Alu 1 263 -47 243 0 0 0 chr12 138585079 138585106 -5201349 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2175 94 41 89 chr12 138585106 138585292 -5201163 - THE1C LTR MaLR -212 163 1 2256 122 0 0 chr12 138586069 138586373 -5200082 + AluSx SINE Alu 1 304 -8 2423 105 0 0 chr12 138587194 138587498 -5198957 + AluSx SINE Alu 1 304 -8 1537 217 24 63 chr12 138587554 138587992 -5198463 - MER67D LTR ERV1 -104 481 126 2171 114 3 7 chr12 138587992 138588289 -5198166 + AluSx SINE Alu 1 296 -16 1537 217 24 63 chr12 138588289 138588411 -5198044 - MER67D LTR ERV1 -459 126 1 505 62 15 0 chr12 138588412 138588477 -5197978 - MER31B LTR ERV1 -399 67 2 298 89 0 0 chr12 138588546 138588591 -5197864 + Alu SINE Alu 255 299 -1 21 0 0 0 chr12 138588592 138588613 -5197842 + AT_rich Low_complexity Low_complexity 1 21 0 383 143 0 12 chr12 138588694 138588778 -5197677 + (GA)n Simple_repeat Simple_repeat 2 84 0 992 89 0 48 chr12 138589343 138589489 -5196966 - AluSq/x SINE Alu -174 139 1 2157 124 7 0 chr12 138589621 138589919 -5196536 + AluSx SINE Alu 1 300 -12 2171 90 7 27 chr12 138590281 138590581 -5195874 - AluSx SINE Alu -18 294 1 980 249 18 9 chr12 138591001 138591226 -5195229 - MIR SINE MIR -27 235 9 1974 82 7 37 chr12 138591315 138591615 -5194840 + AluY SINE Alu 21 312 0 733 144 17 17 chr12 138592765 138592883 -5193572 - AluSc SINE Alu -190 119 2 444 280 96 8 chr12 138592883 138593008 -5193447 - MER45 DNA AcHobo -1445 136 1 289 278 0 0 chr12 138593008 138593080 -5193375 + ERVL LTR ERVL 3131 3202 -2562 213 261 22 11 chr12 138593654 138593746 -5192709 + (TAA)n Simple_repeat Simple_repeat 1 93 0 635 244 23 34 chr12 138594249 138594425 -5192030 + MIR SINE MIR 47 220 -42 4303 182 23 28 chr12 138597746 138598702 -5187753 + L1P LINE L1 2681 3631 -2515 346 141 31 0 chr12 138599117 138599181 -5187274 + Alu SINE Alu 233 298 -2 1209 81 0 0 chr12 138600445 138600594 -5185861 - AluY SINE Alu -161 150 2 451 191 316 0 chr12 138600772 138600908 -5185547 - MER3 DNA MER1_type -23 186 8 1054 206 69 0 chr12 138600913 138601117 -5185338 + MER58A DNA MER1_type 6 223 -1 724 230 61 0 chr12 138601125 138601290 -5185165 - MER5B DNA MER1_type -3 175 1 28 0 0 0 chr12 138601726 138601754 -5184701 + AT_rich Low_complexity Low_complexity 1 28 0 2241 106 0 0 chr12 138602109 138602423 -5184032 + AluSx SINE Alu 1 314 0 374 204 97 11 chr12 138602923 138603016 -5183439 - MIR3 SINE MIR -3 205 105 533 180 0 93 chr12 138603030 138603213 -5183242 + L1M3 LINE L1 5445 5610 -573 3455 102 26 0 chr12 138604029 138604531 -5181924 + L1PB2 LINE L1 5634 6148 -3 269 133 187 40 chr12 138604631 138604706 -5181749 + L1M3 LINE L1 5693 5778 -405 1820 177 10 0 chr12 138605405 138605693 -5180762 - AluSx SINE Alu -21 291 1 23 0 0 0 chr12 138605759 138605782 -5180673 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 138605927 138605952 -5180503 + AT_rich Low_complexity Low_complexity 1 25 0 293 252 74 44 chr12 138606531 138606666 -5179789 - LTR33 LTR ERVL 0 521 383 285 178 300 22 chr12 138606958 138607048 -5179407 - MLT1K LTR MaLR -181 407 293 189 0 0 0 chr12 138607332 138607353 -5179102 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 980 232 58 32 chr12 138607987 138608332 -5178123 - LTR37A LTR ERV1 -3 423 70 2670 114 44 7 chr12 138608339 138608752 -5177703 + MSTA LTR MaLR 1 428 0 267 369 0 0 chr12 138608878 138609000 -5177455 + MIR SINE MIR 131 252 -10 417 226 0 0 chr12 138610268 138610361 -5176094 + L1MB1 LINE L1 6075 6167 -1 241 271 100 43 chr12 138610365 138610505 -5175950 - L2 LINE L2 -8 3305 3158 250 286 43 62 chr12 138610726 138610887 -5175568 + LTR16C LTR ERVL 50 207 -284 654 301 120 22 chr12 138610911 138611227 -5175228 + MLT1H LTR MaLR 106 452 -97 269 299 0 28 chr12 138611604 138611748 -5174707 + (CTA)n Simple_repeat Simple_repeat 3 142 0 198 0 0 0 chr12 138612267 138612289 -5174166 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1791 153 45 0 chr12 138612731 138613019 -5173436 + AluSx SINE Alu 1 301 -11 803 348 29 3 chr12 138613082 138613424 -5173031 + MLT1I LTR MaLR 57 407 -2 383 302 11 17 chr12 138613566 138613603 -5172852 + (TA)n Simple_repeat Simple_repeat 1 37 -141 5590 95 55 8 chr12 138613603 138614455 -5172000 + L1MA2 LINE L1 5413 6304 0 383 302 11 17 chr12 138614455 138614596 -5171859 + (TA)n Simple_repeat Simple_repeat 37 178 0 439 101 11 112 chr12 138614602 138614691 -5171764 - MADE1 DNA Mariner 0 80 1 282 29 0 0 chr12 138616204 138616239 -5170216 + (TG)n Simple_repeat Simple_repeat 2 36 0 1792 121 99 0 chr12 138616239 138616511 -5169944 - AluSx SINE Alu -5 307 9 515 246 15 15 chr12 138616584 138616718 -5169737 - MER94 DNA DNA 0 134 1 1878 148 33 18 chr12 138616738 138617070 -5169385 - L1PA16 LINE L1 0 6166 5830 1606 174 0 0 chr12 138617070 138617335 -5169120 + L1PA16 LINE L1 5579 5843 -323 421 337 112 9 chr12 138617620 138618065 -5168390 + MER113 DNA MER1_type? 31 521 0 266 328 154 22 chr12 138618881 138619306 -5167149 + L2 LINE L2 2561 3097 -216 1839 154 146 11 chr12 138619306 138619683 -5166772 - MSTA LTR MaLR 0 428 1 266 328 154 22 chr12 138619683 138619832 -5166623 + L2 LINE L2 3097 3225 -88 2032 105 58 20 chr12 138620018 138620313 -5166142 - AluSq SINE Alu -2 311 6 25 65 0 0 chr12 138620489 138620535 -5165920 + AT_rich Low_complexity Low_complexity 1 46 0 230 224 153 12 chr12 138620721 138620806 -5165649 + MLT1I LTR MaLR 313 409 0 21 0 0 0 chr12 138621366 138621387 -5165068 + AT_rich Low_complexity Low_complexity 1 21 0 1558 252 36 16 chr12 138622828 138623276 -5163179 + L1MB7 LINE L1 5651 6107 -77 551 160 0 0 chr12 138623310 138623404 -5163051 + AluJ/FRAM SINE Alu 219 312 0 1529 171 26 4 chr12 138623404 138623668 -5162787 + AluJb SINE Alu 1 270 -42 1308 44 6 16 chr12 138623697 138623706 -5162749 + (GAAA)n Simple_repeat Simple_repeat 1 188 0 1308 44 6 16 chr12 138623706 138623888 -5162567 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 216 182 0 0 chr12 138623968 138624012 -5162443 + A-rich Low_complexity Low_complexity 1 44 0 1936 106 0 11 chr12 138624145 138624419 -5162036 - AluSg SINE Alu -3 307 37 301 197 16 0 chr12 138624419 138624480 -5161975 + AluSp/q SINE Alu 237 298 -5 487 254 71 30 chr12 138624867 138625036 -5161419 - MIR SINE MIR -53 209 34 1079 220 59 62 chr12 138625046 138625175 -5161280 + MLT1A1 LTR MaLR 13 141 -224 3859 88 40 2 chr12 138625175 138625707 -5160748 - MER41A LTR ERV1 0 554 3 1079 220 59 62 chr12 138625707 138625931 -5160524 + MLT1A1 LTR MaLR 141 365 0 1986 73 108 35 chr12 138626096 138626383 -5160072 + AluSq SINE Alu 2 309 -4 4082 159 21 17 chr12 138626388 138627112 -5159343 - LTR8A LTR ERV1 0 727 1 327 275 57 83 chr12 138627351 138627425 -5159030 - MLT1I LTR MaLR -4 405 331 2221 119 0 0 chr12 138627425 138627719 -5158736 + AluSg SINE Alu 1 294 -16 327 275 57 83 chr12 138627719 138627837 -5158618 - MLT1I LTR MaLR -78 331 218 343 246 34 25 chr12 138627914 138628032 -5158423 - L1MA8 LINE L1 -2 6289 6171 5039 96 25 4 chr12 138628574 138629251 -5157204 - LTR8 LTR ERV1 0 691 1 216 303 80 48 chr12 138629779 138629967 -5156488 - MIR SINE MIR -17 245 52 216 0 0 0 chr12 138630095 138630119 -5156336 + (TC)n Simple_repeat Simple_repeat 2 25 0 31 0 0 0 chr12 138630167 138630198 -5156257 + AT_rich Low_complexity Low_complexity 1 31 0 236 229 0 16 chr12 138630713 138630774 -5155681 + MIR SINE MIR 67 126 -136 2042 104 45 17 chr12 138630802 138631091 -5155364 - AluSx SINE Alu -15 297 1 606 109 0 0 chr12 138631176 138631268 -5155187 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 234 62 0 0 chr12 138631684 138631716 -5154739 + (TG)n Simple_repeat Simple_repeat 1 32 0 288 0 0 0 chr12 138633737 138633769 -5152686 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 380 268 0 117 chr12 138633795 138633974 -5152481 - MER5B DNA MER1_type -12 166 9 3235 191 53 85 chr12 138634517 138634638 -5151817 - L1MA10 LINE L1 -56 6278 6155 1785 97 56 100 chr12 138634638 138634957 -5151498 - AluSg SINE Alu -5 305 1 3235 191 53 85 chr12 138634957 138635320 -5151135 - L1MA10 LINE L1 -179 6155 5782 2392 122 31 3 chr12 138635320 138635673 -5150782 - THE1B LTR MaLR -1 363 1 3235 191 53 85 chr12 138635673 138636113 -5150342 - L1MA10 LINE L1 -552 5782 5383 1201 253 125 3 chr12 138637127 138637487 -5148968 - MER110 LTR ERV1 -87 404 1 1926 149 10 0 chr12 138637538 138637826 -5148629 - AluSx SINE Alu -21 291 1 846 286 93 26 chr12 138638394 138639033 -5147422 - L2 LINE L2 -1 3312 2639 2219 116 72 23 chr12 138639738 138640083 -5146372 + THE1B LTR MaLR 3 364 0 575 128 43 0 chr12 138640137 138640231 -5146224 + MER4A LTR ERV1 1 98 -566 * 1892 148 165 20 chr12 138640226 138640583 -5145872 + MER4A LTR ERV1 256 664 0 7304 63 1 1 chr12 138641146 138642096 -5144359 + L1PA8 LINE L1 5222 6172 0 267 266 0 16 chr12 138642266 138642330 -5144125 - MIR SINE MIR -187 75 13 1949 81 0 38 chr12 138642384 138642688 -5143767 - AluY SINE Alu 0 325 32 573 273 93 55 chr12 138642931 138643299 -5143156 + L1MC5 LINE L1 7270 7671 -290 1679 165 101 0 chr12 138643299 138643627 -5142828 + MER46B DNA MER2_type 1 236 0 573 273 93 55 chr12 138643627 138643859 -5142596 + L1MC5 LINE L1 7671 7893 -68 279 263 32 70 chr12 138643938 138644124 -5142331 + L2 LINE L2 3100 3278 -35 2048 118 7 0 chr12 138644134 138644473 -5141982 - AluSx SINE Alu 0 341 1 246 136 0 0 chr12 138645291 138645335 -5141120 + (A)n Simple_repeat Simple_repeat 1 44 0 276 30 0 0 chr12 138646701 138646734 -5139721 + (ATG)n Simple_repeat Simple_repeat 2 34 0 256 311 75 0 chr12 138646736 138646842 -5139613 - MIR SINE MIR -3 259 146 2182 96 7 0 chr12 138646903 138647215 -5139240 - AluSp SINE Alu 0 314 1 261 0 0 0 chr12 138647352 138647381 -5139074 + (CAATA)n Simple_repeat Simple_repeat 2 30 0 2051 121 0 13 chr12 138647761 138648066 -5138389 - AluSx SINE Alu -11 301 1 2215 140 35 22 chr12 138648070 138648471 -5137984 - L1MA5A LINE L1 0 6297 5892 218 315 67 0 chr12 138649311 138649400 -5137055 + MIR SINE MIR 89 183 -79 591 315 14 5 chr12 138649775 138649994 -5136461 - MIR SINE MIR -25 237 17 229 276 35 46 chr12 138650001 138650088 -5136367 + MER5B DNA MER1_type 1 86 -92 297 286 20 0 chr12 138650153 138650251 -5136204 + MIR SINE MIR 91 190 -72 368 310 9 0 chr12 138650251 138650364 -5136091 + MER81 DNA DNA 1 114 0 232 242 15 15 chr12 138651348 138651414 -5135041 - Charlie8 DNA MER1_type -2 2415 2350 953 265 81 30 chr12 138651541 138652002 -5134453 + L2 LINE L2 2740 3230 -83 232 136 68 15 chr12 138652006 138652138 -5134317 + (TA)n Simple_repeat Simple_repeat 1 139 0 199 242 45 45 chr12 138652143 138652209 -5134246 + L2 LINE L2 3248 3313 0 2200 102 0 0 chr12 138652377 138652662 -5133793 - AluSx SINE Alu -10 302 18 353 319 7 7 chr12 138652888 138653026 -5133429 + Charlie8 DNA MER1_type 88 225 -2192 670 196 114 27 chr12 138653510 138653694 -5132761 - MER90 LTR ERV1 0 614 415 1815 86 16 0 chr12 138653702 138653957 -5132498 - L1MA1 LINE L1 -9 6293 6035 920 235 82 8 chr12 138653970 138654213 -5132242 - MER90 LTR ERV1 -314 261 1 279 163 12 75 chr12 138656369 138656449 -5130006 + L1ME4a LINE L1 5978 6052 -69 259 252 125 34 chr12 138656677 138656881 -5129574 - MLT1J LTR MaLR -12 603 270 1613 148 7 76 chr12 138656911 138657259 -5129196 + AluSx SINE Alu 1 327 0 291 279 6 73 chr12 138658181 138658290 -5128165 - MIR SINE MIR -1 261 165 2176 120 0 0 chr12 138658290 138658582 -5127873 - AluSg SINE Alu -18 292 1 291 279 6 73 chr12 138658582 138658637 -5127818 - MIR SINE MIR -97 165 108 364 186 32 8 chr12 138659102 138659226 -5127229 + GA-rich Low_complexity Low_complexity 1 127 0 304 266 25 0 chr12 138659618 138659697 -5126758 - L2 LINE L2 -1063 2251 2171 1528 165 91 81 chr12 138659903 138660178 -5126277 + L1MC3 LINE L1 7355 7637 -148 1710 172 0 24 chr12 138660178 138660475 -5125980 + AluJo SINE Alu 1 290 -22 1528 165 91 81 chr12 138660475 138660605 -5125850 + L1MC3 LINE L1 7637 7764 -21 212 321 147 32 chr12 138661015 138661361 -5125094 + L2 LINE L2 2488 2873 -441 339 211 87 10 chr12 138662193 138662297 -5124158 + L2 LINE L2 2932 3043 -270 1962 139 7 10 chr12 138662697 138663000 -5123455 + AluJb SINE Alu 1 302 -10 237 297 31 0 chr12 138663033 138663097 -5123358 - MIR SINE MIR -22 240 175 1956 61 64 90 chr12 138663120 138663431 -5123024 + AluY SINE Alu 1 303 -8 334 197 0 0 chr12 138663780 138663846 -5122609 + L1MA8 LINE L1 6222 6287 -4 283 307 0 0 chr12 138663949 138664024 -5122431 + (CATA)n Simple_repeat Simple_repeat 2 76 0 477 329 71 41 chr12 138666267 138666729 -5119726 - MLT1J LTR MaLR -7 504 29 330 269 10 10 chr12 138667196 138667300 -5119155 + MER5B DNA MER1_type 6 109 -69 1866 185 26 66 chr12 138667317 138667772 -5118683 - L1MC2 LINE L1 -8 6336 5900 269 220 17 0 chr12 138667783 138667842 -5118613 + MER5B DNA MER1_type 118 177 -1 201 227 76 15 chr12 138667903 138667969 -5118486 - MIR3 SINE MIR -52 156 87 635 244 23 34 chr12 138668254 138668430 -5118025 - MIR SINE MIR -42 220 47 213 261 22 11 chr12 138668933 138669025 -5117430 + (TTA)n Simple_repeat Simple_repeat 1 93 0 253 368 39 13 chr12 138669355 138669586 -5116869 - MLT1K LTR MaLR -314 274 38 276 30 0 0 chr12 138669731 138669764 -5116691 + (ATG)n Simple_repeat Simple_repeat 2 34 0 229 308 75 9 chr12 138669766 138669873 -5116582 - MIR SINE MIR -3 259 146 1917 135 53 14 chr12 138672016 138672372 -5114083 - L1PB4 LINE L1 0 6156 5787 648 211 0 0 chr12 138672373 138672520 -5113935 + (TG)n Simple_repeat Simple_repeat 2 148 0 2145 154 8 34 chr12 138672520 138672829 -5113626 - L1PB4 LINE L1 -364 5792 5493 2239 95 3 23 chr12 138672829 138673133 -5113322 - AluSg SINE Alu -12 298 1 2145 154 8 34 chr12 138673133 138673205 -5113250 - L1PB4 LINE L1 -663 5493 5421 249 250 30 20 chr12 138676607 138676707 -5109748 + L1MCc LINE L1 29 129 -6294 910 237 138 71 chr12 138676923 138677415 -5109040 + L1MCc LINE L1 2531 3105 -3836 1855 163 0 27 chr12 138677415 138677715 -5108740 + AluSx SINE Alu 1 292 -20 910 237 138 71 chr12 138677715 138677992 -5108463 + L1MCc LINE L1 3105 3362 -3579 981 103 0 7 chr12 138678003 138678139 -5108316 + AluJb SINE Alu 1 135 -177 1749 165 0 31 chr12 138678139 138678461 -5107994 + AluJb SINE Alu 1 312 0 632 299 47 6 chr12 138678525 138678846 -5107609 + L1MCc LINE L1 3397 3730 -3211 1888 75 0 20 chr12 138678854 138679107 -5107348 + AluY SINE Alu 59 306 -5 22 0 0 0 chr12 138679565 138679587 -5106868 + AT_rich Low_complexity Low_complexity 1 22 0 206 420 0 27 chr12 138679809 138679959 -5106496 + L2 LINE L2 3031 3176 -96 180 0 0 0 chr12 138680847 138680867 -5105588 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr12 138680871 138680894 -5105561 + AT_rich Low_complexity Low_complexity 1 23 0 387 291 17 0 chr12 138680897 138681014 -5105441 - L1ME3 LINE L1 -1 6161 6043 2384 279 61 5 chr12 138681099 138681957 -5104498 - L1M4 LINE L1 -1371 4775 3870 2917 113 51 0 chr12 138681957 138682339 -5104116 + MLT2A1 LTR ERVL 1 407 -37 293 82 20 0 chr12 138682339 138682388 -5104067 + (TA)n Simple_repeat Simple_repeat 2 51 0 2917 113 51 0 chr12 138682388 138682420 -5104035 + MLT2A1 LTR ERVL 407 436 -8 1174 270 26 26 chr12 138682420 138682923 -5103532 - L1M4 LINE L1 -2270 3876 3374 1503 278 41 41 chr12 138683174 138683279 -5103176 - L1ME1 LINE L1 -5 6161 6057 2208 111 0 3 chr12 138683279 138683568 -5102887 - AluSg SINE Alu -22 288 1 1503 278 41 41 chr12 138683568 138683732 -5102723 - L1ME1 LINE L1 -109 6057 5894 1085 216 124 74 chr12 138683732 138684077 -5102378 + MLT2D LTR ERVL 1 370 -44 225 0 0 0 chr12 138684077 138684102 -5102353 + (TG)n Simple_repeat Simple_repeat 2 26 0 1085 216 124 74 chr12 138684102 138684150 -5102305 + MLT2D LTR ERVL 370 414 0 1503 278 41 41 chr12 138684150 138684516 -5101939 - L1ME1 LINE L1 -271 5895 5525 1580 179 54 3 chr12 138685127 138685423 -5101032 + LTR45 LTR ERV1 1 311 -214 1146 192 41 9 chr12 138685557 138685776 -5100679 + LTR45 LTR ERV1 300 525 0 4966 153 44 18 chr12 138686109 138686989 -5099466 + MER4D LTR ERV1 1 903 0 237 167 19 19 chr12 138687378 138687432 -5099023 + LTR37A LTR ERV1 77 130 -296 2685 48 0 0 chr12 138687436 138687747 -5098708 + AluY SINE Alu 1 311 0 399 195 0 0 chr12 138688404 138688481 -5097974 - L1MB3 LINE L1 -26 6157 6081 1262 201 52 82 chr12 138689070 138689118 -5097337 + LTR37A LTR ERV1 1 49 -377 805 273 23 5 chr12 138689118 138689338 -5097117 - MER58A DNA MER1_type 0 224 1 1262 201 52 82 chr12 138689338 138689728 -5096727 + LTR37A LTR ERV1 49 426 0 411 312 165 6 chr12 138689949 138690194 -5096261 - MIR SINE MIR 0 262 5 251 354 10 0 chr12 138690492 138690591 -5095864 - MIR SINE MIR -119 143 44 1992 135 0 49 chr12 138690595 138690922 -5095533 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr12 138690922 138690950 -5095505 + AT_rich Low_complexity Low_complexity 1 28 0 1676 167 3 34 chr12 138691630 138691948 -5094507 + AluJo SINE Alu 1 309 0 420 320 48 19 chr12 138691990 138692196 -5094259 - MIR SINE MIR -6 256 45 286 302 86 49 chr12 138692464 138692709 -5093746 + L2 LINE L2 1904 2157 -1157 256 224 26 26 chr12 138692724 138692840 -5093615 + (TATAA)n Simple_repeat Simple_repeat 5 120 0 297 234 19 0 chr12 138692853 138693011 -5093444 + (TA)n Simple_repeat Simple_repeat 2 162 0 1193 55 7 0 chr12 138693036 138693182 -5093273 + AluY SINE Alu 158 304 -7 257 191 44 7 chr12 138693196 138693332 -5093123 + (TA)n Simple_repeat Simple_repeat 1 141 0 255 103 0 0 chr12 138693336 138693375 -5093080 + (CA)n Simple_repeat Simple_repeat 2 40 0 775 320 55 12 chr12 138693393 138693796 -5092659 + L2 LINE L2 2242 2661 -653 353 288 15 45 chr12 138693807 138693939 -5092516 + L2 LINE L2 3186 3313 0 2182 151 58 32 chr12 138695836 138696353 -5090102 - MLT2A2 LTR ERVL -2 552 1 276 305 69 46 chr12 138696752 138696883 -5089572 + MLT1L LTR MaLR 3 136 -479 369 0 0 0 chr12 138697224 138697265 -5089190 + (TC)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr12 138697264 138697288 -5089167 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 216 0 0 0 chr12 138697287 138697311 -5089144 + (GA)n Simple_repeat Simple_repeat 1 24 0 400 298 28 39 chr12 138697406 138697587 -5088868 + MLT1L LTR MaLR 432 610 -5 1556 267 59 33 chr12 138697941 138698189 -5088266 + L1MCc LINE L1 2 242 -6180 1852 176 0 10 chr12 138698189 138698501 -5087954 - AluSx SINE Alu -3 309 1 1556 267 59 33 chr12 138698501 138698841 -5087614 + L1MCc LINE L1 242 940 -5482 2127 264 46 56 chr12 138698944 138701094 -5085361 + L1MCc LINE L1 946 3263 -3678 657 168 0 24 chr12 138701209 138701334 -5085121 + L1MC3 LINE L1 6697 6818 -967 1653 228 3 19 chr12 138701346 138701705 -5084750 + MLT1A1 LTR MaLR 13 365 0 755 228 107 0 chr12 138701705 138701746 -5084709 + L1MD3 LINE L1 6837 6872 -1123 303 71 0 0 chr12 138701746 138701788 -5084667 + (CA)n Simple_repeat Simple_repeat 1 42 0 755 228 107 0 chr12 138701788 138701970 -5084485 + L1MD3 LINE L1 6872 7084 -911 4118 57 20 0 chr12 138701976 138702505 -5083950 + L1PA8 LINE L1 5629 6167 0 2356 208 79 39 chr12 138702518 138703186 -5083269 + L1MC3 LINE L1 7084 7778 -7 1377 217 69 77 chr12 138703508 138703555 -5082900 + L1MDa LINE L1 27 73 -6467 1690 156 15 0 chr12 138703555 138703825 -5082630 + AluJb SINE Alu 27 300 -12 1377 217 69 77 chr12 138703825 138704012 -5082443 + L1MDa LINE L1 73 260 -6280 2618 61 0 0 chr12 138704012 138704323 -5082132 + AluY SINE Alu 1 311 0 1377 217 69 77 chr12 138704323 138704593 -5081862 + L1MDa LINE L1 260 528 -6012 1019 259 37 17 chr12 138704619 138704913 -5081542 + L1MD1 LINE L1 5941 6240 -2 539 314 103 29 chr12 138705584 138705992 -5080463 - LTR33 LTR ERVL -9 512 75 325 118 0 20 chr12 138706917 138706968 -5079487 - L1M3 LINE L1 -332 5836 5787 2184 115 0 0 chr12 138707070 138707365 -5079090 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 138707365 138707386 -5079069 + AT_rich Low_complexity Low_complexity 1 21 0 257 0 0 29 chr12 138707510 138707544 -5078911 + (CA)n Simple_repeat Simple_repeat 2 34 0 580 207 152 24 chr12 138707546 138707710 -5078745 - L1M3 LINE L1 -519 5793 5609 1370 192 104 9 chr12 138707710 138708027 -5078428 + L1MA9 LINE L1 5959 6305 -7 2499 149 12 2 chr12 138709314 138709722 -5076733 + LOR1a LTR ERV1 1 412 -85 240 163 122 0 chr12 138709723 138709772 -5076683 + U5 snRNA snRNA 1 55 -61 * 722 136 0 0 chr12 138709757 138709860 -5076595 + LOR1a LTR ERV1 395 497 0 1283 228 72 12 chr12 138710355 138710689 -5075766 - L1MA9 LINE L1 0 6312 5959 470 233 135 18 chr12 138710690 138710853 -5075602 + L1M2 LINE L1 5610 5791 -500 234 265 73 0 chr12 138710821 138710889 -5075566 + L1MC4 LINE L1 6630 6702 -1340 * 1403 201 29 26 chr12 138711193 138711537 -5074918 + MLT1A1 LTR MaLR 1 345 -20 4375 92 21 127 chr12 138711792 138712562 -5073893 - LTR12 LTR ERV1 0 688 1 203 255 92 0 chr12 138713978 138714076 -5072379 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 220 196 54 0 chr12 138714639 138714695 -5071760 + MIR SINE MIR 201 259 -3 294 327 44 0 chr12 138714713 138714872 -5071583 - L1ME LINE L1 -345 5776 5611 915 303 76 33 chr12 138716052 138716475 -5069980 - L2 LINE L2 0 3313 2873 21 0 0 0 chr12 138716695 138716716 -5069739 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 138716755 138716786 -5069669 + AT_rich Low_complexity Low_complexity 1 31 0 346 254 62 46 chr12 138717402 138717532 -5068923 - MLT1J LTR MaLR -38 473 342 412 294 13 33 chr12 138717552 138717705 -5068750 + MIR SINE MIR 101 250 -12 201 226 0 0 chr12 138717711 138717764 -5068691 + (CAT)n Simple_repeat Simple_repeat 2 54 0 626 196 0 7 chr12 138717803 138717956 -5068499 + (CACCAT)n Simple_repeat Simple_repeat 5 156 0 710 94 179 26 chr12 138718412 138718529 -5067926 - FLAM_C SINE Alu -4 139 5 226 296 53 6 chr12 138718624 138718793 -5067662 - L1ME LINE L1 -814 5332 5156 324 0 0 0 chr12 138719724 138719760 -5066695 + (TG)n Simple_repeat Simple_repeat 2 37 0 282 106 0 0 chr12 138719870 138719917 -5066538 + (TG)n Simple_repeat Simple_repeat 1 47 0 2484 113 6 3 chr12 138721069 138721415 -5065040 - L1PB1 LINE L1 -1 6150 5804 229 250 170 18 chr12 138721428 138721540 -5064915 + MER20B DNA MER1_type 63 191 -592 1853 202 57 113 chr12 138721761 138722303 -5064152 - LTR9 LTR ERV1 0 612 110 1979 100 7 21 chr12 138722303 138722592 -5063863 - L1PA8 LINE L1 -7 6165 5881 1853 202 57 113 chr12 138722592 138722697 -5063758 - LTR9 LTR ERV1 -502 110 1 327 313 9 0 chr12 138722713 138722825 -5063630 + MLT2C1 LTR ERVL 1 113 -284 1209 269 8 0 chr12 138722827 138723091 -5063364 + Tigger7 DNA MER2_type 2 267 -2220 463 226 0 21 chr12 138723089 138723182 -5063273 + Tigger7 DNA MER2_type 2394 2484 -7 * 912 244 13 22 chr12 138723198 138723428 -5063027 + MLT2C1 LTR ERVL 121 348 -49 362 317 33 39 chr12 138724342 138724522 -5061933 + MIR SINE MIR 14 192 -70 4081 139 12 15 chr12 138724898 138725573 -5060882 + L1PA13 LINE L1 5491 6163 0 2193 131 0 0 chr12 138725630 138725942 -5060513 - AluSx SINE Alu 0 312 1 7942 33 5 0 chr12 138726539 138727779 -5058676 + L1PA3 LINE L1 4912 6155 0 297 151 0 0 chr12 138728477 138728530 -5057925 + T-rich Low_complexity Low_complexity 3 55 0 1031 190 12 0 chr12 138728532 138728695 -5057760 - FRAM SINE Alu 0 166 2 1457 73 0 6 chr12 138728921 138729100 -5057355 + AluSc SINE Alu 1 178 -131 1165 172 5 0 chr12 138729329 138729527 -5056928 - MSTA LTR MaLR -229 199 1 663 184 109 14 chr12 138729527 138729671 -5056784 - MER3 DNA MER1_type -51 158 1 298 280 66 52 chr12 138729824 138729985 -5056470 - L1ME4a LINE L1 0 6121 5953 2032 144 6 10 chr12 138729985 138730297 -5056158 - AluSx SINE Alu -1 311 1 298 280 66 52 chr12 138730297 138730421 -5056034 - L1ME4a LINE L1 -168 5953 5832 1852 157 0 14 chr12 138730656 138730950 -5055505 - AluJb SINE Alu -22 290 1 225 295 0 0 chr12 138730990 138731051 -5055404 - Charlie8 DNA MER1_type -2249 168 108 228 298 64 0 chr12 138731326 138731420 -5055035 - L1ME4a LINE L1 -501 5620 5521 694 168 58 15 chr12 138732131 138732268 -5054187 - L1MB5 LINE L1 -366 5808 5666 1608 213 6 21 chr12 138732268 138732599 -5053856 + L1MB5 LINE L1 5833 6165 -9 222 214 29 14 chr12 138732612 138732682 -5053773 + (TA)n Simple_repeat Simple_repeat 1 71 0 214 171 24 0 chr12 138732683 138732724 -5053731 + GA-rich Low_complexity Low_complexity 2 43 0 280 232 0 49 chr12 138733251 138733333 -5053122 - MLT1J2 LTR MaLR -5 445 368 2060 141 0 3 chr12 138734264 138734563 -5051892 - AluSx SINE Alu -14 298 1 5672 143 13 1 chr12 138734619 138736048 -5050407 - L1PA14 LINE L1 0 6161 4718 2329 98 0 22 chr12 138736275 138736593 -5049862 + AluY SINE Alu 1 311 0 2212 131 40 40 chr12 138737605 138737979 -5048476 - THE1C LTR MaLR -1 374 1 452 274 19 0 chr12 138738761 138738867 -5047588 + MLT1I LTR MaLR 34 141 -268 1177 202 20 84 chr12 138739494 138739840 -5046615 - L1M4 LINE L1 -955 5191 4868 906 184 34 0 chr12 138739839 138740018 -5046437 + L1M2 LINE L1 5433 5617 -674 * 2120 174 72 4 chr12 138740751 138741151 -5045304 - MSTA LTR MaLR -4 424 5 537 196 21 35 chr12 138742101 138742244 -5044211 - MER53 DNA DNA -44 145 5 512 229 37 0 chr12 138742924 138743033 -5043422 - AluJb SINE Alu -2 310 198 455 264 55 77 chr12 138743622 138743857 -5042598 - MLT1L LTR MaLR -267 348 119 1187 93 7 6 chr12 138744179 138744354 -5042101 + L1PA6 LINE L1 5787 5930 -224 439 326 41 0 chr12 138744488 138744660 -5041795 - MIR SINE MIR -36 226 48 44 0 0 0 chr12 138744820 138744864 -5041591 + AT_rich Low_complexity Low_complexity 1 44 0 554 261 67 76 chr12 138744865 138745103 -5041352 + L1ME3A LINE L1 5551 5786 -384 22 88 0 0 chr12 138745106 138745163 -5041292 + AT_rich Low_complexity Low_complexity 1 57 0 1960 160 0 0 chr12 138745207 138745494 -5040961 + AluSx SINE Alu 1 287 -25 292 278 109 52 chr12 138745633 138745881 -5040574 + L1ME3A LINE L1 5904 6165 -5 373 279 71 13 chr12 138746407 138746561 -5039894 + L1ME LINE L1 5500 5662 -459 1936 243 67 0 chr12 138747554 138748044 -5038411 - MER74A LTR ERVL 0 558 36 1844 159 0 22 chr12 138748105 138748420 -5038035 - AluJo SINE Alu 0 312 5 8732 165 14 16 chr12 138748875 138751349 -5035106 + L1PB1 LINE L1 3506 5974 -177 43581 33 22 1 chr12 138751349 138757375 -5029080 + L1PA3 LINE L1 1 6154 -1 1062 143 66 11 chr12 138757393 138757575 -5028880 + L1PB1 LINE L1 5959 6150 -1 320 209 86 57 chr12 138757681 138757786 -5028669 + MIR SINE MIR 48 155 -107 820 189 0 0 chr12 138757791 138757918 -5028537 + FLAM_C SINE Alu 1 127 -16 788 257 162 19 chr12 138758027 138758518 -5027937 + MLT1G1 LTR MaLR 1 582 -13 215 286 0 0 chr12 138758762 138758839 -5027616 + (TA)n Simple_repeat Simple_repeat 2 78 0 2134 111 0 14 chr12 138759893 138760211 -5026244 - AluSx SINE Alu 0 314 1 1536 164 7 11 chr12 138760426 138760695 -5025760 - AluSx SINE Alu -1 311 44 2433 50 3 10 chr12 138761354 138761653 -5024802 + AluY SINE Alu 1 297 -14 6380 90 23 4 chr12 138761706 138762708 -5023747 - L1PA12 LINE L1 -11 6157 5130 394 183 0 0 chr12 138763730 138763801 -5022654 - MLT1F1 LTR MaLR -114 453 383 335 335 13 13 chr12 138763956 138764111 -5022344 - MLT1E LTR MaLR -431 162 8 954 175 3 0 chr12 138766077 138766391 -5020064 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 656 298 71 34 chr12 138766392 138766801 -5019654 - L2 LINE L2 -1 3312 2889 353 185 85 31 chr12 138767633 138767763 -5018692 + L1MC5 LINE L1 7601 7737 -224 716 293 82 68 chr12 138769496 138769998 -5016457 - MLT1J LTR MaLR -2 509 1 2222 115 0 0 chr12 138770318 138770614 -5015841 + AluSx SINE Alu 1 296 -16 201 333 21 0 chr12 138770683 138770779 -5015676 + MIR SINE MIR 146 243 -19 221 257 266 0 chr12 138771473 138771582 -5014873 + MIR SINE MIR 125 262 0 358 301 34 0 chr12 138771776 138771922 -5014533 - Charlie8 DNA MER1_type -2227 190 40 248 288 76 27 chr12 138773417 138773601 -5012854 - L1ME LINE L1 -218 5903 5711 420 350 35 5 chr12 138773609 138773809 -5012646 - MIR SINE MIR 0 262 57 218 371 43 7 chr12 138774218 138774358 -5012097 + MIR3 SINE MIR 5 149 -59 295 316 96 18 chr12 138774430 138774648 -5011807 + MLT1K LTR MaLR 13 247 -341 2240 115 3 13 chr12 138775590 138775904 -5010551 - AluSx SINE Alu -1 311 1 285 267 60 88 chr12 138776381 138776479 -5009976 - L1MC5 LINE L1 -25 7936 7837 2186 126 0 0 chr12 138776479 138776780 -5009675 + AluSx SINE Alu 1 301 -11 285 267 60 88 chr12 138776780 138777241 -5009214 - L1MC5 LINE L1 -124 7837 7414 1765 243 46 24 chr12 138777241 138777789 -5008666 + MER68 LTR ERV1 1 560 -2 285 267 60 88 chr12 138777789 138777879 -5008576 - L1MC5 LINE L1 -547 7414 7323 236 284 86 0 chr12 138778091 138778172 -5008283 + LTR50 LTR ERVL 6 93 -702 284 227 36 36 chr12 138778483 138778593 -5007862 + LTR41 LTR ERVL 585 694 -79 24 0 0 0 chr12 138778804 138778828 -5007627 + AT_rich Low_complexity Low_complexity 1 24 0 529 258 82 124 chr12 138778930 138779086 -5007369 - ERVL LTR ERVL -455 5309 5148 1189 175 53 7 chr12 138779086 138779371 -5007084 - L1MA8 LINE L1 0 6291 5994 529 258 82 124 chr12 138779371 138779664 -5006791 - ERVL LTR ERVL -616 5148 4879 546 257 16 76 chr12 138779974 138780223 -5006232 - MER112 DNA MER1_type -13 247 14 606 252 10 73 chr12 138780413 138780619 -5005836 - MIR SINE MIR -26 236 44 265 288 25 0 chr12 138780821 138780901 -5005554 + MER117 DNA MER1_type 74 155 -42 548 266 108 84 chr12 138780956 138781336 -5005119 - L2 LINE L2 -34 3279 2891 1587 169 14 11 chr12 138781472 138781750 -5004705 - AluJb SINE Alu -22 290 12 23 0 0 0 chr12 138781766 138781789 -5004666 + AT_rich Low_complexity Low_complexity 1 23 0 761 275 33 0 chr12 138782042 138782253 -5004202 + MER20 DNA MER1_type 2 219 0 503 16 16 0 chr12 138783039 138783103 -5003352 + (TG)n Simple_repeat Simple_repeat 2 66 0 269 191 64 21 chr12 138783317 138783411 -5003044 + L1ME LINE L1 5566 5663 -458 343 340 57 24 chr12 138783419 138783631 -5002824 + MLT1K LTR MaLR 1 219 -369 219 290 149 9 chr12 138783850 138783957 -5002498 + L2 LINE L2 3187 3308 -5 263 229 36 136 chr12 138783968 138784108 -5002347 + MLT1K LTR MaLR 426 551 -37 1615 212 12 17 chr12 138784231 138784576 -5001879 + MER61A LTR ERV1 1 343 0 2292 96 3 0 chr12 138784987 138785278 -5001177 - AluSq SINE Alu -20 293 2 463 294 144 56 chr12 138785323 138785752 -5000703 - L2 LINE L2 0 3313 2847 2359 93 7 0 chr12 138786847 138787148 -4999307 - AluSc SINE Alu -6 303 1 308 332 34 15 chr12 138787629 138787954 -4998501 + L1M4 LINE L1 4855 5185 -961 481 178 56 0 chr12 138787955 138788062 -4998393 + L1MA9 LINE L1 6194 6306 -6 21 0 0 0 chr12 138788106 138788127 -4998328 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 22 28 chr12 138788210 138788389 -4998066 + L1ME3A LINE L1 5965 6142 -28 1342 304 60 45 chr12 138788451 138789379 -4997076 + L1ME1 LINE L1 34 975 -5421 207 328 9 17 chr12 138789408 138789444 -4997011 + (CATA)n Simple_repeat Simple_repeat 4 39 -79 1787 186 34 3 chr12 138789444 138789798 -4996657 - MER47A DNA MER2_type -1 365 1 207 328 9 17 chr12 138789798 138789877 -4996578 + (CATA)n Simple_repeat Simple_repeat 39 118 0 4887 260 50 43 chr12 138789908 138790899 -4995556 + L1ME1 LINE L1 1018 2001 -4214 1716 167 16 16 chr12 138790899 138791217 -4995238 + L1PB4 LINE L1 5831 6148 -8 4887 260 50 43 chr12 138791217 138792027 -4994428 + L1ME1 LINE L1 2001 2804 -3411 582 23 60 30 chr12 138792027 138792160 -4994295 + (TA)n Simple_repeat Simple_repeat 2 138 0 4887 260 50 43 chr12 138792160 138794149 -4992306 + L1ME1 LINE L1 2804 4781 -1434 1199 252 66 74 chr12 138794142 138794500 -4991955 + L1ME1 LINE L1 5206 5565 -670 * 2187 128 0 0 chr12 138794500 138794805 -4991650 + AluSx SINE Alu 1 305 -7 1199 252 66 74 chr12 138794805 138795189 -4991266 + L1ME1 LINE L1 5565 5939 -296 2002 156 0 0 chr12 138795189 138795484 -4990971 + AluJo SINE Alu 1 295 -17 1199 252 66 74 chr12 138795484 138795626 -4990829 + L1ME1 LINE L1 5939 6081 -154 1428 106 0 0 chr12 138795647 138795836 -4990619 + AluSp SINE Alu 107 295 -18 495 279 0 0 chr12 138795837 138795984 -4990471 + L1MA10 LINE L1 6186 6332 -2 243 0 0 0 chr12 138796019 138796046 -4990409 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2137 126 3 0 chr12 138796545 138796847 -4989608 + AluSq SINE Alu 1 303 -10 1000 171 164 19 chr12 138797329 138797592 -4988863 - L1MB2 LINE L1 -7 6164 5864 2387 80 0 0 chr12 138798846 138799145 -4987310 - AluY SINE Alu -12 299 1 431 299 47 0 chr12 138799197 138799324 -4987131 - MIR SINE MIR -118 144 12 393 296 48 37 chr12 138799802 138799991 -4986464 + MIR SINE MIR 14 204 -58 565 297 0 44 chr12 138800014 138800243 -4986212 - MER58A DNA MER1_type 0 224 6 464 160 49 62 chr12 138801551 138801695 -4984760 - L1MC3 LINE L1 -29 7756 7615 201 199 0 90 chr12 138801729 138801895 -4984560 + (TTA)n Simple_repeat Simple_repeat 1 151 0 1075 220 93 37 chr12 138802006 138802361 -4984094 + MLT1D LTR MaLR 6 380 -125 468 152 105 0 chr12 138802639 138802744 -4983711 + MLT1D LTR MaLR 390 505 0 188 361 113 0 chr12 138802848 138802945 -4983510 + L2 LINE L2 3162 3269 -3 297 75 0 0 chr12 138803515 138803555 -4982900 + (CA)n Simple_repeat Simple_repeat 1 40 0 605 136 10 0 chr12 138803801 138803904 -4982551 + MSTB LTR MaLR 4 107 -319 1362 172 68 65 chr12 138803942 138804279 -4982176 + MSTB LTR MaLR 89 426 0 351 353 24 24 chr12 138804812 138804979 -4981476 + MIR SINE MIR 27 193 -69 606 183 167 11 chr12 138805159 138805339 -4981116 + MER44D DNA MER2_type 1 478 -131 810 147 0 0 chr12 138805353 138805469 -4980986 - FLAM_C SINE Alu -17 126 11 732 199 7 0 chr12 138805480 138805621 -4980834 + MER44D DNA MER2_type 468 609 0 436 243 112 44 chr12 138805755 138806006 -4980449 + L1MEd LINE L1 989 1256 -4863 2040 109 32 7 chr12 138806075 138806360 -4980095 + AluSg SINE Alu 1 292 -18 306 0 0 0 chr12 138806361 138806395 -4980060 + (TA)n Simple_repeat Simple_repeat 1 34 0 558 79 0 0 chr12 138806395 138806471 -4979984 + (TG)n Simple_repeat Simple_repeat 1 76 0 415 327 137 32 chr12 138806682 138806698 -4979757 + L1MEd LINE L1 2218 2231 -3898 2457 94 6 3 chr12 138806698 138807040 -4979415 + L1PA11 LINE L1 5830 6172 -2 415 327 137 32 chr12 138807040 138807568 -4978887 + L1MEd LINE L1 2231 2703 -3426 1158 155 10 14 chr12 138807568 138807775 -4978680 - L1PA13 LINE L1 0 6163 5958 1660 165 4 4 chr12 138807780 138808047 -4978408 - AluJo SINE Alu -14 298 32 415 327 137 32 chr12 138808047 138808425 -4978030 + L1MEd LINE L1 2706 3244 -2885 526 143 19 0 chr12 138808428 138808533 -4977922 + (TG)n Simple_repeat Simple_repeat 2 108 0 2269 113 0 3 chr12 138808925 138809226 -4977229 - AluSq SINE Alu -13 300 1 23 68 0 0 chr12 138809566 138809610 -4976845 + AT_rich Low_complexity Low_complexity 1 44 0 270 250 36 36 chr12 138809641 138809725 -4976730 - MIR SINE MIR -64 198 115 342 221 48 9 chr12 138809869 138810010 -4976445 + L1MEc LINE L1 1890 1991 -4549 351 65 0 0 chr12 138810020 138810066 -4976389 + (CA)n Simple_repeat Simple_repeat 2 47 0 275 258 140 14 chr12 138810597 138810818 -4975637 + L1MEc LINE L1 2624 2872 -3668 1833 130 85 31 chr12 138810889 138811243 -4975212 - THE1C LTR MaLR -2 373 1 1602 84 13 4 chr12 138812194 138812433 -4974022 - L1PB2 LINE L1 -38 6113 5873 504 272 119 38 chr12 138812556 138812737 -4973718 + MIR SINE MIR 9 215 -47 450 0 0 0 chr12 138812737 138812787 -4973668 + (TA)n Simple_repeat Simple_repeat 2 51 0 504 272 119 38 chr12 138812787 138812840 -4973615 + MIR SINE MIR 215 262 0 512 356 8 25 chr12 138813441 138813677 -4972778 + MIR SINE MIR 23 254 -8 216 0 0 0 chr12 138813677 138813701 -4972754 + (TTA)n Simple_repeat Simple_repeat 1 24 0 867 269 54 64 chr12 138813704 138814206 -4972249 - LTR33 LTR ERVL -2 519 23 301 223 100 46 chr12 138814434 138814564 -4971891 - MIR SINE MIR 0 262 126 343 157 86 0 chr12 138814700 138814770 -4971685 - L2 LINE L2 -25 3288 3213 2074 185 104 27 chr12 138814782 138815203 -4971252 + L1MB8 LINE L1 5558 6034 -144 5393 142 80 29 chr12 138815203 138816173 -4970282 + LTR28 LTR ERV1 1 1020 0 2074 185 104 27 chr12 138816173 138816309 -4970146 + L1MB8 LINE L1 6034 6158 -20 1340 103 5 11 chr12 138816309 138816494 -4969961 - AluSg/x SINE Alu -17 295 112 2272 145 75 5 chr12 138816641 138817040 -4969415 + MSTA LTR MaLR 2 428 0 338 246 62 33 chr12 138818461 138818733 -4967722 + L1MEc LINE L1 3527 3806 -2734 198 305 64 53 chr12 138818815 138819002 -4967453 + L2 LINE L2 3047 3235 -78 2044 92 4 0 chr12 138820506 138820768 -4965687 - AluSp SINE Alu -17 296 34 282 338 0 68 chr12 138820917 138821009 -4965446 + MIR SINE MIR 7 87 -175 1994 154 0 0 chr12 138821009 138821307 -4965148 + AluSx SINE Alu 1 298 -14 282 338 0 68 chr12 138821307 138821362 -4965093 + MIR SINE MIR 87 144 -118 31 76 0 0 chr12 138821669 138821735 -4964720 + AT_rich Low_complexity Low_complexity 1 66 0 30 45 0 0 chr12 138822335 138822379 -4964076 + AT_rich Low_complexity Low_complexity 1 44 0 203 173 96 96 chr12 138823015 138823119 -4963336 - MER91C DNA MER1_type 0 140 37 4669 161 49 13 chr12 138823350 138824221 -4962234 - MER4D LTR ERV1 0 903 1 198 239 0 0 chr12 138824417 138824463 -4961992 + L2 LINE L2 3264 3309 -4 202 291 81 12 chr12 138825383 138825469 -4960986 + L2 LINE L2 3175 3266 -47 3173 214 31 20 chr12 138826815 138827643 -4958812 - L1MB8 LINE L1 -15 6163 5327 861 184 29 109 chr12 138827772 138828147 -4958308 - Charlie1 DNA MER1_type -35 2726 2382 2809 220 45 7 chr12 138828518 138829117 -4957338 - LTR26E LTR ERV1 0 622 1 600 303 91 37 chr12 138829242 138829481 -4956974 - LTR16A LTR ERVL -2 448 183 5334 74 17 54 chr12 138829481 138830198 -4956257 - LTR8 LTR ERV1 -1 690 1 600 303 91 37 chr12 138830198 138830308 -4956147 - LTR16A LTR ERVL -267 183 80 252 273 26 0 chr12 138830351 138830428 -4956027 - MIR SINE MIR -70 192 114 1378 190 51 60 chr12 138830509 138830889 -4955566 + MER67C LTR ERV1 2 403 -243 369 0 0 0 chr12 138830939 138830980 -4955475 + (CA)n Simple_repeat Simple_repeat 1 41 0 291 250 183 0 chr12 138830984 138831088 -4955367 + MER67D LTR ERV1 392 514 0 822 229 121 45 chr12 138831232 138831630 -4954825 + MLT1C LTR MaLR 7 434 -33 25 51 0 0 chr12 138831754 138831793 -4954662 + AT_rich Low_complexity Low_complexity 1 39 0 1810 160 10 13 chr12 138831793 138832106 -4954349 - AluSx SINE Alu 0 312 1 2575 55 0 7 chr12 138832373 138832682 -4953773 - AluY SINE Alu -2 309 3 2553 193 57 85 chr12 138832785 138833527 -4952928 + LTR8A LTR ERV1 1 721 -6 1583 73 0 97 chr12 138834057 138834305 -4952150 - AluSc SINE Alu -13 296 73 206 349 119 8 chr12 138834646 138834772 -4951683 + MIR3 SINE MIR 16 155 -53 400 301 126 19 chr12 138834786 138834852 -4951603 - MER113 DNA MER1_type? -19 502 444 2049 96 46 0 chr12 138834852 138835132 -4951323 + AluSc SINE Alu 1 293 -16 400 301 126 19 chr12 138835132 138835477 -4950978 - MER113 DNA MER1_type? -77 444 47 324 273 76 126 chr12 138835634 138836095 -4950360 + MLT1J LTR MaLR 74 511 0 3118 60 0 11 chr12 138836430 138836811 -4949644 - L1PA8 LINE L1 -3 6169 5793 23 33 0 0 chr12 138837019 138837049 -4949406 + AT_rich Low_complexity Low_complexity 1 30 0 235 261 0 14 chr12 138837474 138837543 -4948912 - Charlie8 DNA MER1_type -2141 276 209 646 268 137 31 chr12 138838150 138838531 -4947924 - MLT1L LTR MaLR -34 581 161 3958 194 49 21 chr12 138838835 138839676 -4946779 + L1MC1 LINE L1 5467 6330 -3 4516 121 7 29 chr12 138839678 138840370 -4946085 - L1PA13 LINE L1 0 6163 5487 2272 88 0 3 chr12 138841042 138841338 -4945117 + AluY SINE Alu 1 295 -16 253 355 36 29 chr12 138841683 138841821 -4944634 + MIR3 SINE MIR 69 207 -1 1762 150 0 35 chr12 138842055 138842341 -4944114 + AluJb SINE Alu 29 304 -8 745 283 32 9 chr12 138842917 138843136 -4943319 + MER58A DNA MER1_type 1 224 0 207 0 0 0 chr12 138843390 138843413 -4943042 + (A)n Simple_repeat Simple_repeat 1 23 0 1590 212 11 95 chr12 138843544 138843988 -4942467 + MLT1C LTR MaLR 60 466 -1 1254 255 69 37 chr12 138844031 138844458 -4941997 - MLT1D LTR MaLR 0 505 164 1963 98 8 4 chr12 138844458 138844724 -4941731 + AluSg SINE Alu 40 306 -4 1254 255 69 37 chr12 138844724 138844894 -4941561 - MLT1D LTR MaLR -341 164 1 552 277 46 39 chr12 138845119 138845401 -4941054 + MLT1J LTR MaLR 228 511 0 305 309 40 24 chr12 138846097 138846223 -4940232 - MIR SINE MIR -120 142 15 219 69 0 0 chr12 138846463 138846492 -4939963 + (CA)n Simple_repeat Simple_repeat 2 30 0 503 191 29 29 chr12 138846496 138846601 -4939854 - L1M3 LINE L1 -396 5772 5668 654 211 15 0 chr12 138846604 138846737 -4939718 + L1MB1 LINE L1 6033 6167 -1 1232 206 23 46 chr12 138846900 138847206 -4939249 - AluJo SINE Alu -13 299 1 321 329 92 6 chr12 138847255 138847419 -4939036 - MIR SINE MIR -4 258 81 2374 53 0 0 chr12 138849042 138849350 -4937105 + AluY SINE Alu 1 308 0 248 304 111 33 chr12 138850470 138850713 -4935742 - MLT1J LTR MaLR -13 498 237 196 279 0 0 chr12 138851290 138851333 -4935122 + L2 LINE L2 3216 3258 -14 2749 270 105 29 chr12 138851543 138852117 -4934338 + L1MEc LINE L1 17 546 -5671 2059 130 104 27 chr12 138852117 138852455 -4934000 - THE1B LTR MaLR 0 364 1 11866 93 26 3 chr12 138852455 138854000 -4932455 - THE1B-int LTR MaLR 0 1580 1 2422 110 48 22 chr12 138854000 138854355 -4932100 - THE1B LTR MaLR 0 364 1 2749 270 105 29 chr12 138854355 138854753 -4931702 + L1MEc LINE L1 546 967 -5250 567 96 0 0 chr12 138854753 138854836 -4931619 + (CA)n Simple_repeat Simple_repeat 2 84 0 2749 270 105 29 chr12 138854836 138855113 -4931342 + L1MEc LINE L1 967 1222 -4995 522 284 44 22 chr12 138855605 138855788 -4930667 + MIR SINE MIR 18 204 -58 775 277 66 54 chr12 138856186 138856536 -4929919 - L1ME1 LINE L1 0 6166 5813 1228 277 70 3 chr12 138856536 138856919 -4929536 + L1ME LINE L1 5364 5772 -394 435 54 0 40 chr12 138856928 138857002 -4929453 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 517 108 4 26 chr12 138857019 138857107 -4929348 + THE1B LTR MaLR 89 177 -178 318 265 16 97 chr12 138857133 138857318 -4929137 + L2 LINE L2 3144 3313 0 306 312 50 37 chr12 138857336 138857554 -4928901 - LTR67 LTR ERVL -107 450 230 2386 215 53 0 chr12 138857719 138858267 -4928188 + L1MB5 LINE L1 5598 6174 0 279 0 0 0 chr12 138858445 138858476 -4927979 + (A)n Simple_repeat Simple_repeat 1 31 0 2729 96 11 11 chr12 138858844 138859208 -4927247 + THE1B LTR MaLR 1 364 0 302 191 0 0 chr12 138859357 138859421 -4927034 - L1MC1 LINE L1 -232 6101 6047 268 83 42 0 chr12 138859560 138859608 -4926847 + T-rich Low_complexity Low_complexity 5 54 0 1756 152 16 16 chr12 138859632 138859935 -4926520 - L1MC1 LINE L1 0 6333 6031 5019 217 23 0 chr12 138860701 138861779 -4924676 - L1PB1 LINE L1 -4 6147 5049 2895 179 3 58 chr12 138861779 138862431 -4924024 + L1PB1 LINE L1 4436 5051 -1095 372 315 9 9 chr12 138863355 138863466 -4922989 + L2 LINE L2 3162 3272 0 280 326 20 10 chr12 138863773 138863871 -4922584 - MIR3 SINE MIR -33 175 77 2340 70 3 27 chr12 138863952 138864252 -4922203 + AluY SINE Alu 1 293 -18 1001 145 6 0 chr12 138864257 138864416 -4922039 - L1MA4A LINE L1 -12 6291 6132 4962 120 5 51 chr12 138864416 138864537 -4921918 + L1PA16 LINE L1 5364 5489 -677 2167 136 0 0 chr12 138864537 138864846 -4921609 + AluSx SINE Alu 1 309 -3 4962 120 5 51 chr12 138864846 138865549 -4920906 + L1PA16 LINE L1 5489 6150 -16 550 134 31 0 chr12 138865619 138865716 -4920739 - L1MA4A LINE L1 -152 6151 6052 2333 151 97 16 chr12 138865717 138866160 -4920295 + LTR22B LTR ERVK 14 492 0 881 90 23 73 chr12 138866160 138866337 -4920118 - L1MA4A LINE L1 -244 6059 5892 365 284 40 27 chr12 138866975 138867123 -4919332 - MIR SINE MIR -64 198 49 358 317 84 62 chr12 138867850 138868019 -4918436 - L1MC4a LINE L1 -1852 5956 5792 2175 106 13 7 chr12 138868019 138868320 -4918135 - AluSx SINE Alu -9 303 1 358 317 84 62 chr12 138868320 138868601 -4917854 - L1MC4a LINE L1 -2016 5792 5496 1396 116 0 42 chr12 138868660 138868876 -4917579 - THE1A LTR MaLR 0 355 149 4743 131 6 58 chr12 138868876 138870169 -4916286 + pTR5 LTR ERV1 743 2283 -155 1177 87 6 35 chr12 138870172 138870344 -4916111 - THE1A LTR MaLR -188 167 1 371 328 57 24 chr12 138870539 138870778 -4915677 - MIR SINE MIR -1 261 17 993 176 12 6 chr12 138870866 138871036 -4915419 + AluSc SINE Alu 124 294 -15 291 250 58 0 chr12 138871063 138871183 -4915272 - L1MDa LINE L1 -3742 2798 2672 315 273 105 41 chr12 138871188 138871360 -4915095 - L1MDa LINE L1 -3892 2648 2466 364 324 20 0 chr12 138871640 138871742 -4914713 + MIR SINE MIR 47 150 -112 336 83 0 0 chr12 138872480 138872528 -4913927 + (CA)n Simple_repeat Simple_repeat 1 48 0 207 390 29 29 chr12 138874103 138874239 -4912216 + L2 LINE L2 3129 3264 -8 376 156 22 0 chr12 138874605 138874695 -4911760 + (TG)n Simple_repeat Simple_repeat 2 93 0 24 53 0 0 chr12 138874738 138874776 -4911679 + AT_rich Low_complexity Low_complexity 1 38 0 2215 86 17 3 chr12 138874977 138875268 -4911187 - AluSq SINE Alu -18 295 1 837 298 41 30 chr12 138876349 138876712 -4909743 + MER68 LTR ERV1 194 560 -2 8465 45 16 0 chr12 138876722 138877785 -4908670 - L1P LINE L1 -1051 5095 4016 1003 211 0 39 chr12 139077888 139078120 -4708335 + MLT1D LTR MaLR 283 505 0 983 114 0 0 chr12 139078637 139078768 -4707687 + AluSq/x SINE Alu 1 131 -182 295 295 91 84 chr12 139079332 139079617 -4706838 + MLT1K LTR MaLR 12 298 -290 185 220 0 17 chr12 139079620 139079679 -4706776 + CT-rich Low_complexity Low_complexity 3 60 0 929 230 96 13 chr12 139079735 139079974 -4706481 - L1ME LINE L1 -404 5762 5504 5896 194 68 58 chr12 139079975 139081715 -4704740 + L1MDa LINE L1 677 2435 -4105 740 238 31 16 chr12 139081930 139082303 -4704152 + L1MDa LINE L1 2444 2820 -3720 333 157 20 98 chr12 139082311 139082413 -4704042 + MLT1I LTR MaLR 127 220 -189 1082 281 32 83 chr12 139082668 139083223 -4703232 + MLT1K LTR MaLR 48 574 -14 195 303 261 5 chr12 139083274 139083462 -4702993 - MIR SINE MIR -15 247 12 384 292 56 6 chr12 139083780 139083941 -4702514 - MIR SINE MIR -16 246 78 500 217 23 27 chr12 139084979 139085382 -4701073 + (CA)n Simple_repeat Simple_repeat 1 401 0 380 244 24 0 chr12 139085398 139085728 -4700727 + (CA)n Simple_repeat Simple_repeat 1 338 0 1227 221 22 44 chr12 139085746 139086062 -4700393 - MER68 LTR ERV1 -219 343 35 401 292 9 0 chr12 139086229 139086342 -4700113 - L2 LINE L2 0 3313 3200 1953 103 69 0 chr12 139087294 139087590 -4698865 - AluY SINE Alu 0 314 1 2597 212 18 42 chr12 139087642 139088213 -4698242 + MER68 LTR ERV1 6 562 0 254 255 106 11 chr12 139088213 139088307 -4698148 - MIR SINE MIR -99 163 61 224 227 0 124 chr12 139088536 139088633 -4697822 + MER91B DNA MER1_type 1 85 -105 315 275 60 24 chr12 139088642 139088809 -4697646 + MER104 DNA Tc2 8 180 0 239 323 0 10 chr12 139088861 139088957 -4697498 + MER91B DNA MER1_type 90 184 -6 279 0 0 0 chr12 139089797 139089828 -4696627 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 139089860 139089882 -4696573 + AT_rich Low_complexity Low_complexity 1 22 0 786 231 56 41 chr12 139090094 139090289 -4696166 - MER20 DNA MER1_type -21 198 1 319 232 30 30 chr12 139090514 139090613 -4695842 - MLT1H1 LTR MaLR -66 489 391 230 254 0 56 chr12 139090638 139090709 -4695746 - MLT1H1 LTR MaLR -303 287 221 1059 263 69 49 chr12 139091055 139091503 -4694952 - MLT1C LTR MaLR 0 467 11 285 297 27 0 chr12 139092213 139092324 -4694131 - MIR3 SINE MIR -6 202 89 373 339 0 6 chr12 139093479 139093656 -4692799 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 * 426 327 0 6 chr12 139093534 139093823 -4692632 + A-rich Low_complexity Low_complexity 1 287 0 523 248 45 13 chr12 139094531 139094697 -4691758 + MLT1L LTR MaLR 114 270 -342 * 589 171 85 0 chr12 139094689 139094818 -4691637 + MLT1D LTR MaLR 192 331 -174 297 307 15 22 chr12 139094931 139095068 -4691387 + MLT1L LTR MaLR 476 611 -4 440 289 28 83 chr12 139095321 139095383 -4691072 + MIR SINE MIR 6 70 -192 2082 170 154 0 chr12 139095383 139095819 -4690636 + MLT1D LTR MaLR 3 505 0 440 289 28 83 chr12 139095819 139095982 -4690473 + MIR SINE MIR 70 218 -44 2822 125 16 5 chr12 139095982 139096405 -4690050 + MSTA LTR MaLR 1 428 0 440 289 28 83 chr12 139096405 139096431 -4690024 + MIR SINE MIR 218 244 -18 2401 77 0 26 chr12 139096539 139096850 -4689605 + AluY SINE Alu 1 303 -8 2427 129 57 26 chr12 139096992 139097510 -4688945 - MLT2A2 LTR ERVL 0 554 1 1997 138 7 10 chr12 139097943 139098240 -4688215 + AluSx SINE Alu 1 296 -16 208 221 26 0 chr12 139099530 139099607 -4686848 + GA-rich Low_complexity Low_complexity 1 79 0 24 0 0 0 chr12 139100035 139100059 -4686396 + AT_rich Low_complexity Low_complexity 1 24 0 2537 40 3 0 chr12 139100383 139100679 -4685776 + AluY SINE Alu 1 297 -14 189 107 0 0 chr12 139100696 139100724 -4685731 + (TG)n Simple_repeat Simple_repeat 1 28 0 323 140 105 0 chr12 139100876 139100933 -4685522 - MLT1B LTR MaLR -35 355 293 2061 181 63 34 chr12 139100935 139101103 -4685352 - MSTB LTR MaLR 0 426 264 2287 126 93 15 chr12 139101103 139101499 -4684956 + MSTA LTR MaLR 1 427 -1 2061 181 63 34 chr12 139101499 139101556 -4684899 - MSTB LTR MaLR -162 264 210 2069 133 0 0 chr12 139101556 139101856 -4684599 - AluSx SINE Alu -11 301 2 2061 181 63 34 chr12 139101856 139101956 -4684499 - MSTB LTR MaLR -216 210 114 2658 133 29 5 chr12 139101956 139102377 -4684078 + MER57B LTR ERV1 4 434 0 2061 181 63 34 chr12 139102377 139102463 -4683992 - MSTB LTR MaLR -312 114 1 1110 231 20 27 chr12 139102463 139102758 -4683697 - MLT1B LTR MaLR -95 295 3 236 226 16 16 chr12 139103088 139103150 -4683305 - L2 LINE L2 -6 3307 3246 767 132 121 40 chr12 139103154 139103223 -4683232 + LTR51 LTR ERV1 5 67 -604 2693 14 0 0 chr12 139103223 139103569 -4682886 + AluYb8 SINE Alu 1 346 0 767 132 121 40 chr12 139103569 139103672 -4682783 + LTR51 LTR ERV1 67 192 -479 * 1689 190 3 19 chr12 139103670 139103955 -4682500 + LTR51 LTR ERV1 360 641 -30 4089 86 13 4 chr12 139103955 139104504 -4681951 + MER41A LTR ERV1 1 554 0 1689 190 3 19 chr12 139104504 139104534 -4681921 + LTR51 LTR ERV1 641 670 -1 449 283 134 31 chr12 139104558 139105055 -4681400 - L2 LINE L2 -65 3248 2708 1746 229 52 42 chr12 139105090 139105588 -4680867 + MLT1D LTR MaLR 1 503 -2 244 277 92 67 chr12 139105948 139106143 -4680312 - MER105 DNA DNA -2 202 3 277 119 83 95 chr12 139107221 139107305 -4679150 - LTR48 LTR ERV1 -96 691 609 264 231 29 67 chr12 139107355 139107459 -4678996 - LTR48 LTR ERV1 -309 478 379 1170 141 84 0 chr12 139107477 139107668 -4678787 - MER34C LTR ERV1 -374 211 5 762 186 0 0 chr12 139107672 139107812 -4678643 + L1MB4 LINE L1 6040 6179 -1 478 288 74 59 chr12 139107841 139108314 -4678141 - L2 LINE L2 -6 3307 2828 458 243 33 40 chr12 139108582 139108734 -4677721 + MER5B DNA MER1_type 7 157 -21 655 278 16 11 chr12 139109232 139109419 -4677036 - MIR SINE MIR -62 200 13 1767 194 37 8 chr12 139109491 139109846 -4676609 - MLT1A1 LTR MaLR 0 365 1 415 288 24 24 chr12 139110158 139110328 -4676127 - MIR SINE MIR -75 187 18 21 36 0 0 chr12 139110393 139110421 -4676034 + AT_rich Low_complexity Low_complexity 1 28 0 1158 269 48 36 chr12 139111359 139111775 -4674680 + MLT1J1 LTR MaLR 17 437 -9 220 342 9 27 chr12 139112225 139112336 -4674119 - L2 LINE L2 -208 3064 2956 311 296 17 9 chr12 139112429 139112544 -4673911 + L3b LINE CR1 1334 1449 -134 384 232 12 0 chr12 139112716 139112798 -4673657 + MER112 DNA MER1_type 1 83 -177 225 291 4 13 chr12 139112799 139113046 -4673409 + (CA)n Simple_repeat Simple_repeat 1 244 0 503 263 17 11 chr12 139113062 139113241 -4673214 + (CA)n Simple_repeat Simple_repeat 1 180 0 349 321 0 18 chr12 139113170 139113335 -4673120 + (CATA)n Simple_repeat Simple_repeat 2 163 0 * 1230 178 46 0 chr12 139113381 139113600 -4672855 - MLT1D LTR MaLR 0 505 277 3051 99 14 7 chr12 139113603 139114150 -4672305 + LTR66 LTR ERVL 1 610 0 935 172 23 111 chr12 139114162 139114423 -4672032 - MLT1D LTR MaLR -267 238 1 302 237 201 7 chr12 139115712 139115851 -4670604 - L1ME4a LINE L1 0 6121 5956 1091 224 23 0 chr12 139116419 139116638 -4669817 - MER58A DNA MER1_type 0 224 1 1179 284 103 8 chr12 139117116 139117592 -4668863 + LTR33 LTR ERVL 1 521 0 1280 214 96 50 chr12 139117659 139117775 -4668680 + MLT1C LTR MaLR 6 115 -352 4072 95 11 2 chr12 139117775 139118324 -4668131 + MER41A LTR ERV1 1 554 0 1280 214 96 50 chr12 139118324 139118646 -4667809 + MLT1C LTR MaLR 115 464 -3 385 228 189 28 chr12 139119346 139119526 -4666929 + Charlie8 DNA MER1_type 58 266 -2151 424 260 0 32 chr12 139119624 139119747 -4666708 - L2 LINE L2 0 3313 3195 272 164 70 35 chr12 139120814 139120985 -4665470 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 365 136 57 51 chr12 139121099 139121275 -4665180 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 350 139 69 35 chr12 139121418 139121591 -4664864 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 314 144 64 40 chr12 139121761 139121934 -4664521 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 314 144 64 40 chr12 139122000 139122173 -4664282 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 1600 214 63 112 chr12 139123689 139124263 -4662192 - MLT1E2 LTR MaLR 0 626 81 849 192 20 0 chr12 139124263 139124414 -4662041 + AluJb SINE Alu 139 292 -20 380 331 0 16 chr12 139126182 139126306 -4660149 + MIR SINE MIR 16 137 -71 260 236 123 28 chr12 139126702 139126808 -4659647 - MLT1L LTR MaLR -71 544 429 2465 168 37 35 chr12 139126828 139127429 -4659026 + pTR5 LTR ERV1 743 1344 -1094 3369 127 157 91 chr12 139127445 139128216 -4658239 + LTR12 LTR ERV1 5 826 0 21 0 0 0 chr12 139128751 139128772 -4657683 + AT_rich Low_complexity Low_complexity 1 21 0 189 196 0 0 chr12 139129100 139129146 -4657309 + (CACCAT)n Simple_repeat Simple_repeat 1 46 0 266 381 0 0 chr12 139129150 139129284 -4657171 + (CCA)n Simple_repeat Simple_repeat 2 135 0 * 464 304 0 27 chr12 139129214 139129477 -4656978 + (CACCAT)n Simple_repeat Simple_repeat 1 255 0 681 237 68 61 chr12 139129582 139129832 -4656623 - MLT1E2 LTR MaLR -5 604 333 241 284 158 39 chr12 139130029 139130156 -4656299 - MIR SINE MIR -108 154 13 262 300 54 8 chr12 139130223 139130353 -4656102 - MIR SINE MIR -80 182 47 1986 208 140 5 chr12 139130976 139131419 -4655036 - MLT1D LTR MaLR -2 503 1 3381 150 25 81 chr12 139131849 139132581 -4653874 + LTR8 LTR ERV1 1 691 0 237 244 0 0 chr12 139133132 139133218 -4653237 + GA-rich Low_complexity Low_complexity 1 86 0 393 296 75 30 chr12 139134036 139134235 -4652220 - MIR SINE MIR -33 229 22 441 284 123 76 chr12 139134380 139135145 -4651310 + HAL1 LINE L1 5 805 -1702 433 268 152 31 chr12 139135218 139135442 -4651013 + HAL1 LINE L1 732 982 -1525 1115 284 54 29 chr12 139135577 139136021 -4650434 - MER74B LTR ERVL -93 529 75 983 242 30 95 chr12 139136042 139136570 -4649885 + HAL1 LINE L1 1040 1533 -974 2040 171 35 31 chr12 139136584 139137133 -4649322 - MLT2A2 LTR ERVL 0 554 1 521 195 92 130 chr12 139137356 139137618 -4648837 + LTR33A LTR ERVL 127 378 -145 2147 173 34 31 chr12 139137621 139138171 -4648284 - MLT2A2 LTR ERVL 0 554 1 418 239 72 7 chr12 139138171 139138309 -4648146 + LTR33A LTR ERVL 377 523 0 293 238 75 89 chr12 139138310 139138524 -4647931 - MIR SINE MIR -33 229 19 470 330 43 10 chr12 139139199 139139408 -4647047 - MIR SINE MIR -15 247 32 802 260 39 0 chr12 139139817 139140025 -4646430 + MIR SINE MIR 25 240 -22 237 268 0 0 chr12 139140817 139140888 -4645567 + L1ME LINE L1 5245 5315 -831 737 190 25 6 chr12 139141232 139141390 -4645065 + L1ME LINE L1 5310 5470 -696 551 88 0 55 chr12 139141396 139141487 -4644968 + L1PA10 LINE L1 6082 6167 -1 580 271 62 7 chr12 139141531 139141804 -4644651 + L1M4 LINE L1 4303 4590 -1556 1105 223 48 0 chr12 139141832 139142101 -4644354 + L1MC3 LINE L1 7497 7778 -7 27 29 0 0 chr12 139142136 139142170 -4644285 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 139142395 139142428 -4644027 + AT_rich Low_complexity Low_complexity 1 33 0 1513 187 0 8 chr12 139142862 139143130 -4643325 + AluJo SINE Alu 25 290 -22 1864 165 32 32 chr12 139143876 139144251 -4642204 - THE1C LTR MaLR 0 375 1 192 40 0 0 chr12 139144306 139144331 -4642124 + (TG)n Simple_repeat Simple_repeat 2 26 0 423 149 23 58 chr12 139144680 139144767 -4641688 + MLT1K LTR MaLR 144 227 -361 418 115 149 0 chr12 139145335 139145422 -4641033 + L1ME LINE L1 5674 5773 -391 352 100 0 0 chr12 139145422 139145478 -4640977 - MLT2A2 LTR ERVL 0 453 405 1853 228 138 34 chr12 139146099 139146666 -4639789 + MLT1E2 LTR MaLR 1 626 0 1713 147 3 118 chr12 139147978 139148359 -4638096 + MER1B DNA MER1_type 1 337 0 2324 147 2 35 chr12 139148910 139149088 -4637367 - Tigger2 DNA MER2_type -2 2716 2534 2262 107 0 0 chr12 139149088 139149386 -4637069 - AluSq SINE Alu -15 298 1 2324 147 2 35 chr12 139149386 139149603 -4636852 - Tigger2 DNA MER2_type -184 2534 2334 1953 112 3 30 chr12 139149620 139149915 -4636540 - MER1A DNA MER1_type 0 529 243 358 227 0 0 chr12 139150163 139150238 -4636217 + MER89 LTR ERV1 183 257 -302 253 222 91 10 chr12 139150248 139150347 -4636108 - L1M4 LINE L1 -998 5148 5042 1299 215 24 33 chr12 139150506 139150836 -4635619 + MER89 LTR ERV1 224 550 -9 405 272 128 42 chr12 139151195 139151460 -4634995 + LTR16C LTR ERVL 163 450 -41 713 130 41 0 chr12 139151590 139151713 -4634742 - MER41A LTR ERV1 0 554 427 3038 100 74 0 chr12 139151833 139152293 -4634162 - MER41A LTR ERV1 -60 494 1 23 0 0 0 chr12 139152467 139152490 -4633965 + AT_rich Low_complexity Low_complexity 1 23 0 2171 97 3 10 chr12 139152630 139152928 -4633527 + AluSq SINE Alu 1 296 -17 414 325 74 12 chr12 139152966 139153342 -4633113 + L1MC4 LINE L1 7545 8031 -11 368 292 128 82 chr12 139153420 139153810 -4632645 + MLT1L LTR MaLR 1 408 -207 203 133 0 44 chr12 139154530 139154575 -4631880 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 183 365 129 18 chr12 139154589 139154759 -4631696 + MIR SINE MIR 22 210 -52 279 0 0 0 chr12 139154804 139154835 -4631620 + (ATG)n Simple_repeat Simple_repeat 3 33 0 585 169 16 57 chr12 139155183 139155492 -4630963 - AluSx SINE Alu 0 493 190 672 186 0 8 chr12 139155493 139155611 -4630844 - AluSx SINE Alu -194 118 2 241 313 47 31 chr12 139155630 139155758 -4630697 - MIR SINE MIR -125 137 8 25 51 0 0 chr12 139156234 139156273 -4630182 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 139156637 139156666 -4629789 + AT_rich Low_complexity Low_complexity 1 29 0 2072 192 43 11 chr12 139157674 139158117 -4628338 + L1MA9 LINE L1 5856 6312 0 407 277 40 39 chr12 139158197 139158353 -4628102 - MIR SINE MIR -62 146 25 251 329 12 0 chr12 139159159 139159241 -4627214 - MIR SINE MIR -98 164 82 278 62 188 0 chr12 139159268 139159316 -4627139 + MER63 DNA MER1_type 691 747 -314 227 224 17 0 chr12 139159323 139159381 -4627074 + MER63 DNA MER1_type 979 1037 -24 468 314 20 0 chr12 139159409 139159562 -4626893 + MIR SINE MIR 76 231 -31 804 223 56 15 chr12 139159776 139159973 -4626482 - MER3 DNA MER1_type 0 209 5 2287 68 24 10 chr12 139160116 139160411 -4626044 + AluY SINE Alu 1 299 -12 21 0 0 0 chr12 139160498 139160519 -4625936 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 139160569 139160590 -4625865 + AT_rich Low_complexity Low_complexity 1 21 0 2048 132 24 0 chr12 139160783 139161072 -4625383 - AluSx SINE Alu -16 296 1 356 248 15 21 chr12 139161417 139161560 -4624895 + MER63 DNA MER1_type 696 1061 0 2167 119 0 10 chr12 139161922 139162224 -4624231 - AluSx SINE Alu -13 299 1 25 31 0 0 chr12 139162597 139162629 -4623826 + AT_rich Low_complexity Low_complexity 1 32 0 2288 117 3 0 chr12 139162640 139162948 -4623507 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr12 139163928 139163949 -4622506 + (TA)n Simple_repeat Simple_repeat 2 22 0 561 309 58 5 chr12 139164113 139164336 -4622119 - MIR SINE MIR -4 258 24 238 250 83 53 chr12 139164542 139164674 -4621781 - L2 LINE L2 -1 3271 3136 374 343 51 19 chr12 139164855 139165071 -4621384 - MIR SINE MIR 0 262 40 1028 126 34 0 chr12 139165325 139165500 -4620955 - L1MA7 LINE L1 -5 6286 6106 1896 154 58 0 chr12 139165643 139165936 -4620519 + AluSx SINE Alu 1 310 -2 2725 133 26 0 chr12 139165998 139166413 -4620042 - MSTB LTR MaLR 0 426 1 889 247 154 49 chr12 139167745 139168211 -4618244 + LTR33 LTR ERVL 7 521 0 2425 103 3 0 chr12 139169106 139169417 -4617038 - AluSx SINE Alu 0 312 1 504 332 26 30 chr12 139169542 139169807 -4616648 + MLT1I LTR MaLR 74 337 -72 578 262 48 71 chr12 139169853 139170063 -4616392 + MIR SINE MIR 35 239 -23 200 211 0 0 chr12 139171090 139171128 -4615327 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 115 0 58 chr12 139172737 139172789 -4613666 + (TA)n Simple_repeat Simple_repeat 2 50 0 998 247 90 34 chr12 139172877 139172893 -4613562 + L1MC4 LINE L1 6614 6628 -1414 225 0 0 0 chr12 139172893 139172918 -4613537 + (GA)n Simple_repeat Simple_repeat 2 26 0 998 247 90 34 chr12 139172918 139172951 -4613504 + L1MC4 LINE L1 6628 6658 -1384 231 36 0 0 chr12 139172951 139172979 -4613476 + (CA)n Simple_repeat Simple_repeat 1 28 0 998 247 90 34 chr12 139172979 139173284 -4613171 + L1MC4 LINE L1 6658 6989 -1053 683 151 53 7 chr12 139173284 139173436 -4613019 + Charlie5 DNA MER1_type 2371 2529 -83 298 241 92 69 chr12 139173454 139173715 -4612740 - HAL1 LINE L1 -16 2491 2225 318 319 29 65 chr12 139173835 139173973 -4612482 - HAL1b LINE L1 -468 880 748 2126 152 29 34 chr12 139174485 139174937 -4611518 - MLT2A2 LTR ERVL -93 461 1 1741 188 53 10 chr12 139174942 139175335 -4611120 + L1MB7 LINE L1 5775 6184 0 565 123 19 0 chr12 139175470 139175576 -4610879 + CT-rich Low_complexity Low_complexity 1 108 0 1386 196 31 0 chr12 139176476 139176767 -4609688 - AluSx SINE Alu -7 305 6 340 151 0 0 chr12 139176937 139176990 -4609465 + T-rich Low_complexity Low_complexity 1 53 0 227 184 104 0 chr12 139177171 139177334 -4609121 + (CACAT)n Simple_repeat Simple_repeat 1 180 0 * 298 149 68 34 chr12 139177235 139177383 -4609072 + (CTCA)n Simple_repeat Simple_repeat 2 154 0 638 175 0 0 chr12 139177389 139177492 -4608963 - AluJb SINE Alu -208 104 2 315 242 82 71 chr12 139177788 139177970 -4608485 - MER112 DNA MER1_type -28 232 49 1890 144 0 10 chr12 139177980 139178286 -4608169 - AluJo SINE Alu -9 303 1 1455 244 39 62 chr12 139178652 139179120 -4607335 + MLT1C LTR MaLR 3 459 -8 498 284 75 75 chr12 139179155 139179543 -4606912 - Charlie8 DNA MER1_type -1942 475 88 2136 120 0 7 chr12 139179574 139179883 -4606572 - AluSx SINE Alu 0 312 6 1643 201 18 3 chr12 139179897 139180235 -4606220 - L1PA16 LINE L1 -16 6150 5808 2362 132 25 6 chr12 139180985 139181342 -4605113 + THE1B LTR MaLR 1 364 0 743 274 92 58 chr12 139181425 139181925 -4604530 + LTR33 LTR ERVL 5 521 0 300 269 25 59 chr12 139181954 139182073 -4604382 - L1MC4 LINE L1 -1315 6727 6613 303 246 39 46 chr12 139182405 139182535 -4603920 - MER53 DNA DNA -38 151 23 272 224 8 0 chr12 139182708 139182842 -4603613 + (TG)n Simple_repeat Simple_repeat 2 136 0 469 302 0 0 chr12 139182888 139183067 -4603388 + (TG)n Simple_repeat Simple_repeat 1 179 0 334 313 6 6 chr12 139183117 139183293 -4603162 + (TG)n Simple_repeat Simple_repeat 1 176 0 455 276 0 6 chr12 139183307 139183488 -4602967 + (TG)n Simple_repeat Simple_repeat 1 180 0 480 268 0 6 chr12 139183514 139183693 -4602762 + (TG)n Simple_repeat Simple_repeat 1 178 0 536 116 15 67 chr12 139183881 139184154 -4602301 + (TG)n Simple_repeat Simple_repeat 1 258 0 286 146 36 104 chr12 139185836 139186028 -4600427 + (TA)n Simple_repeat Simple_repeat 2 180 0 304 263 11 32 chr12 139186032 139186127 -4600328 + L1MC4 LINE L1 6609 6701 -1341 202 236 74 128 chr12 139186269 139186417 -4600038 - MIR SINE MIR 0 262 123 189 0 0 0 chr12 139188670 139188691 -4597764 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1837 89 0 36 chr12 139188693 139188973 -4597482 - AluSx SINE Alu -5 307 38 387 308 83 12 chr12 139189377 139189546 -4596909 - MER5A DNA MER1_type -6 183 3 214 284 92 28 chr12 139189546 139189650 -4596805 + MIR SINE MIR 81 191 -71 435 225 0 0 chr12 139189653 139189733 -4596722 - L2 LINE L2 -2 3311 3232 1514 238 123 5 chr12 139189907 139190328 -4596127 + MLT2B1 LTR ERVL 5 475 -45 214 274 14 14 chr12 139190331 139190404 -4596051 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 1941 104 10 14 chr12 139190532 139190821 -4595634 + THE1A LTR MaLR 1 288 -67 2081 197 31 7 chr12 139190925 139191347 -4595108 + L1MB5 LINE L1 5683 6114 -60 207 0 0 0 chr12 139191350 139191373 -4595082 + (CA)n Simple_repeat Simple_repeat 1 23 0 266 262 177 21 chr12 139191557 139191698 -4594757 - LTR33 LTR ERVL -27 494 332 242 340 28 14 chr12 139191810 139191954 -4594501 - LTR33 LTR ERVL -352 169 24 2200 99 0 3 chr12 139192111 139192405 -4594050 - AluSq SINE Alu -15 298 6 183 80 0 0 chr12 139192798 139192823 -4593632 + (TC)n Simple_repeat Simple_repeat 2 26 0 459 181 16 28 chr12 139193380 139193562 -4592893 + (TG)n Simple_repeat Simple_repeat 1 180 0 234 121 35 17 chr12 139193640 139193698 -4592757 + (TG)n Simple_repeat Simple_repeat 2 60 0 420 181 48 12 chr12 139193760 139194100 -4592355 + (TG)n Simple_repeat Simple_repeat 1 352 0 321 151 50 0 chr12 139194157 139194276 -4592179 + (TG)n Simple_repeat Simple_repeat 1 125 0 342 220 59 22 chr12 139196191 139196293 -4590162 + L1MC4 LINE L1 1995 6983 -1339 214 218 18 0 chr12 139196300 139196355 -4590100 + (TA)n Simple_repeat Simple_repeat 2 57 0 2331 189 12 50 chr12 139197349 139197847 -4588608 + MLT2B2 LTR ERVL 2 480 -35 343 126 0 6 chr12 139197879 139197950 -4588505 + MLT2B2 LTR ERVL 452 515 0 349 247 33 0 chr12 139197975 139198125 -4588330 + GA-rich Low_complexity Low_complexity 2 156 0 1520 109 45 0 chr12 139198176 139198396 -4588059 + MER30 DNA MER1_type 1 230 0 249 226 71 24 chr12 139198666 139198750 -4587705 - L1M3de LINE L1 -6464 189 102 284 335 109 34 chr12 139199483 139199776 -4586679 + MLT1K LTR MaLR 2 316 -272 353 239 22 0 chr12 139199982 139200074 -4586381 - MIR SINE MIR -73 189 96 1534 93 25 10 chr12 139200904 139201301 -4585154 + L1PA10 LINE L1 5672 6163 -5 566 282 84 74 chr12 139201395 139201679 -4584776 + MLT2E LTR ERVL 1 287 -341 319 274 43 0 chr12 139201742 139201859 -4584596 - L1ME LINE L1 -2379 3701 3580 * 2335 36 0 11 chr12 139201855 139202134 -4584321 - L1P2 LINE L1 -431 5724 5449 1261 40 0 0 chr12 139202134 139202280 -4584175 + L1PA4 LINE L1 6006 6154 -1 442 287 6 24 chr12 139202285 139202452 -4584003 - L1ME LINE L1 -2499 3581 3418 1573 256 138 38 chr12 139202452 139203011 -4583444 + MLT1E2 LTR MaLR 1 615 -11 2185 248 56 62 chr12 139203025 139204209 -4582246 - L1ME LINE L1 -2672 3408 2233 481 136 3 18 chr12 139204210 139204302 -4582153 - MLT1C LTR MaLR 0 467 398 328 114 0 0 chr12 139204302 139204346 -4582109 - L1M2 LINE L1 -651 5649 5606 1264 183 35 42 chr12 139204346 139204631 -4581824 - AluJo SINE Alu -23 289 7 1184 193 80 18 chr12 139204634 139204908 -4581547 - L1M2 LINE L1 -683 5608 5318 1330 245 32 111 chr12 139204981 139205341 -4581114 - L1ME LINE L1 -5463 607 319 2042 140 0 0 chr12 139205341 139205649 -4580806 + AluSx SINE Alu 1 308 -4 1330 245 32 111 chr12 139205649 139205937 -4580518 - L1ME LINE L1 -5751 319 10 685 232 74 26 chr12 139206052 139206242 -4580213 + MLT2E LTR ERVL 426 624 -4 460 296 35 45 chr12 139207984 139208183 -4578272 - MLT1I LTR MaLR 0 409 213 394 259 171 19 chr12 139208433 139208591 -4577864 + MER5A DNA MER1_type 2 183 -6 883 248 26 13 chr12 139208598 139208832 -4577623 + MIR SINE MIR 18 254 -8 464 108 36 0 chr12 139208835 139208918 -4577537 + (ATGGTG)n Simple_repeat Simple_repeat 1 86 0 1076 128 6 0 chr12 139208918 139209097 -4577358 + (ATG)n Simple_repeat Simple_repeat 1 180 0 709 258 181 0 chr12 139209656 139209877 -4576578 + MIR SINE MIR 2 262 0 371 230 163 15 chr12 139209980 139210115 -4576340 - L2 LINE L2 0 3313 3159 252 87 0 65 chr12 139210428 139210474 -4575981 + MIR SINE MIR 95 137 -125 462 329 78 23 chr12 139210506 139210813 -4575642 + L2 LINE L2 2395 2718 -596 703 274 68 21 chr12 139210821 139211142 -4575313 + L2 LINE L2 2920 3313 0 231 211 67 77 chr12 139211149 139211253 -4575202 + MIR SINE MIR 136 238 -24 293 62 21 0 chr12 139214106 139214154 -4572301 + (CGGGGG)n Simple_repeat Simple_repeat 5 53 0 31 0 0 0 chr12 139214348 139214379 -4572076 + GC_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr12 139214440 139214465 -4571990 + GC_rich Low_complexity Low_complexity 1 25 0 214 211 145 26 chr12 139215219 139215295 -4571160 + MIR SINE MIR 118 202 -60 427 364 0 0 chr12 139215887 139216030 -4570425 + G-rich Low_complexity Low_complexity 1 143 0 270 0 0 0 chr12 139216370 139216400 -4570055 + (TG)n Simple_repeat Simple_repeat 2 31 0 328 314 51 35 chr12 139217323 139217578 -4568877 - MER46C DNA MER2_type -70 268 10 2110 120 3 0 chr12 139217995 139218330 -4568125 + AluSx SINE Alu 1 336 0 367 158 24 24 chr12 139218376 139218458 -4567997 + L1MA8 LINE L1 6210 6291 0 381 188 135 0 chr12 139218458 139218554 -4567901 - L1M4 LINE L1 -2168 3978 3870 3076 247 70 10 chr12 139219055 139220099 -4566356 - L1ME1 LINE L1 -6 6229 5124 1791 231 45 5 chr12 139220103 139220860 -4565595 - L1ME1 LINE L1 -3518 2697 1949 435 149 31 161 chr12 139221754 139221915 -4564540 + MER5B DNA MER1_type 13 152 -26 3460 143 2 8 chr12 139222177 139222707 -4563748 + MER1A DNA MER1_type 1 527 0 853 245 124 38 chr12 139222789 139223197 -4563258 - MLT1C LTR MaLR -2 465 14 216 0 0 0 chr12 139223919 139223943 -4562512 + (CA)n Simple_repeat Simple_repeat 1 24 0 894 281 92 42 chr12 139224172 139224627 -4561828 - MLT1K LTR MaLR -4 584 107 1761 180 66 28 chr12 139225700 139225772 -4560683 + MLT2D LTR ERVL 3 71 -343 324 0 0 0 chr12 139225772 139225808 -4560647 + (TG)n Simple_repeat Simple_repeat 2 37 0 1761 180 66 28 chr12 139225808 139226130 -4560325 + MLT2D LTR ERVL 71 412 -2 22 0 0 0 chr12 139226300 139226322 -4560133 + AT_rich Low_complexity Low_complexity 1 22 0 627 267 107 17 chr12 139226442 139226936 -4559519 + L2 LINE L2 2711 3246 -67 398 311 23 15 chr12 139227789 139227921 -4558534 - MLT1K LTR MaLR -298 290 158 181 303 123 25 chr12 139228383 139228545 -4557910 + MIR SINE MIR 20 197 -65 570 324 61 21 chr12 139228558 139228885 -4557570 + LTR33 LTR ERVL 10 349 -172 1937 258 98 7 chr12 139229136 139229290 -4557165 - L1MC4 LINE L1 -150 7892 7754 2033 135 40 50 chr12 139229290 139229669 -4556786 - THE1C LTR MaLR 0 375 1 1937 258 98 7 chr12 139229669 139230114 -4556341 - L1MC4 LINE L1 -288 7754 7238 1440 214 84 3 chr12 139230116 139230471 -4555984 - L1MC4 LINE L1 -957 7085 6702 246 81 0 0 chr12 139230548 139230585 -4555870 + (TC)n Simple_repeat Simple_repeat 2 38 0 579 209 82 14 chr12 139230615 139230784 -4555671 - L1MC4a LINE L1 -1148 6654 6483 604 110 40 20 chr12 139231161 139231272 -4555183 + MLT2B2 LTR ERVL 313 515 0 205 355 184 0 chr12 139231346 139231498 -4554957 - MIR SINE MIR -58 204 25 1622 163 3 28 chr12 139231879 139232161 -4554294 + AluJb SINE Alu 7 281 -31 1277 139 83 0 chr12 139232165 139232395 -4554060 + L1MA5 LINE L1 6049 6297 -3 892 141 0 22 chr12 139232661 139232845 -4553610 + (TC)n Simple_repeat Simple_repeat 1 180 0 570 176 0 0 chr12 139232849 139232968 -4553487 + CT-rich Low_complexity Low_complexity 2 120 0 730 132 201 60 chr12 139233920 139234101 -4552354 - MER20 DNA MER1_type 0 219 1 1014 167 71 184 chr12 139234159 139234752 -4551703 - L1MC4 LINE L1 0 8042 7517 2417 86 3 0 chr12 139234901 139235203 -4551252 - AluSp SINE Alu -10 303 1 225 326 7 14 chr12 139235800 139235938 -4550517 + (CTCA)n Simple_repeat Simple_repeat 4 140 0 * 451 324 6 22 chr12 139235858 139236040 -4550415 + (CA)n Simple_repeat Simple_repeat 1 179 0 294 218 46 46 chr12 139236109 139236196 -4550259 - MER4-int LTR ERV1 -5437 1161 1075 1843 136 168 11 chr12 139237007 139237376 -4549079 - MSTA LTR MaLR 0 428 2 287 189 57 75 chr12 139238163 139238269 -4548186 - MER20 DNA MER1_type -88 131 28 537 267 96 67 chr12 139238546 139239036 -4547419 + LTR33A LTR ERVL 13 516 -7 433 286 8 0 chr12 139239294 139239413 -4547042 + L2 LINE L2 3187 3306 -7 272 198 44 159 chr12 139239714 139239896 -4546559 - MER112 DNA MER1_type -95 165 5 22 0 0 0 chr12 139240392 139240414 -4546041 + AT_rich Low_complexity Low_complexity 1 22 0 1735 212 17 3 chr12 139241370 139241729 -4544726 - MLT1A1 LTR MaLR 0 365 2 476 72 14 0 chr12 139241818 139241887 -4544568 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 21 0 0 0 chr12 139241915 139241936 -4544519 + AT_rich Low_complexity Low_complexity 1 21 0 949 149 14 14 chr12 139242059 139242207 -4544248 - FRAM SINE Alu -27 149 2 202 189 0 0 chr12 139242308 139242345 -4544110 - MIR SINE MIR -115 147 111 557 271 92 18 chr12 139243085 139243303 -4543152 - MLT1L LTR MaLR -6 609 376 27 49 0 0 chr12 139243726 139243767 -4542688 + AT_rich Low_complexity Low_complexity 1 41 0 205 288 27 14 chr12 139245005 139245078 -4541377 + L2 LINE L2 2685 2758 -556 472 240 48 20 chr12 139245280 139245426 -4541029 - L1MD3 LINE L1 -10 7985 7836 1573 204 0 13 chr12 139247616 139247929 -4538526 + AluJo SINE Alu 1 309 -3 2160 141 33 25 chr12 139248618 139248979 -4537476 - THE1B LTR MaLR 0 364 1 937 250 48 29 chr12 139250569 139250841 -4535614 + MLT1H LTR MaLR 71 347 -202 428 169 48 12 chr12 139250885 139250968 -4535487 + MLT1H LTR MaLR 463 548 -1 2192 116 30 3 chr12 139251196 139251498 -4534957 + AluSx SINE Alu 1 310 -2 708 149 53 0 chr12 139251959 139252073 -4534382 + FLAM_C SINE Alu 2 121 -22 25 65 0 0 chr12 139252073 139252119 -4534336 + AT_rich Low_complexity Low_complexity 1 46 0 2365 70 10 3 chr12 139253065 139253363 -4533092 - AluY SINE Alu -11 300 1 357 279 205 43 chr12 139254741 139254999 -4531456 + MLT1K LTR MaLR 56 355 -233 21 0 0 0 chr12 139255153 139255174 -4531281 + AT_rich Low_complexity Low_complexity 1 21 0 235 268 0 0 chr12 139255356 139255412 -4531043 + L2 LINE L2 3257 3312 -1 2079 190 27 60 chr12 139256221 139256581 -4529874 - L1MB5 LINE L1 0 6174 5839 2330 102 0 9 chr12 139256581 139256896 -4529559 - AluSx SINE Alu 0 312 1 2079 190 27 60 chr12 139256896 139257067 -4529388 - L1MB5 LINE L1 -335 5839 5664 1370 230 20 14 chr12 139257117 139257169 -4529286 + L1MA4 LINE L1 5951 6001 -299 2379 149 26 35 chr12 139257169 139257598 -4528857 - MSTB LTR MaLR 0 426 2 1370 230 20 14 chr12 139257598 139257893 -4528562 + L1MA4 LINE L1 6001 6300 0 21 36 0 0 chr12 139257896 139257924 -4528531 + AT_rich Low_complexity Low_complexity 1 28 0 263 214 80 54 chr12 139258893 139259005 -4527450 - MLT1K LTR MaLR -90 498 384 664 149 78 39 chr12 139259005 139259159 -4527296 + MLT1C LTR MaLR 4 163 -304 1318 174 9 0 chr12 139259162 139259381 -4527074 - AluJb SINE Alu -6 306 86 1137 242 53 23 chr12 139259381 139259683 -4526772 + MLT1C LTR MaLR 157 467 0 180 278 28 28 chr12 139260163 139260235 -4526220 - MIR SINE MIR -150 112 41 279 248 132 16 chr12 139260487 139260608 -4525847 - MLT1L LTR MaLR -448 167 33 24 0 0 0 chr12 139260742 139260766 -4525689 + AT_rich Low_complexity Low_complexity 1 24 0 1514 201 131 15 chr12 139261354 139261751 -4524704 + MLT1C LTR MaLR 17 459 -8 261 302 90 40 chr12 139261816 139262170 -4524285 - L2 LINE L2 -124 3189 2818 1645 230 60 14 chr12 139262485 139262920 -4523535 + MLT1C LTR MaLR 6 460 -7 1857 146 0 43 chr12 139264463 139264764 -4521691 + AluSx SINE Alu 1 288 -24 294 326 11 0 chr12 139264900 139264992 -4521463 - L2 LINE L2 -11 3261 3169 201 39 0 0 chr12 139266215 139266241 -4520214 + (GA)n Simple_repeat Simple_repeat 1 26 0 2408 89 0 0 chr12 139266406 139266699 -4519756 + AluSg SINE Alu 1 293 -17 1706 162 0 45 chr12 139267344 139267658 -4518797 + AluJb SINE Alu 1 300 -12 297 0 0 0 chr12 139267999 139268032 -4518423 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2568 217 35 12 chr12 139268091 139268691 -4517764 + L1MD2 LINE L1 5746 6359 0 1247 281 176 8 chr12 139268821 139269327 -4517128 + MLT1G1 LTR MaLR 2 592 -3 419 256 90 26 chr12 139269799 139269955 -4516500 - L2 LINE L2 0 3313 3148 234 302 16 0 chr12 139270720 139270783 -4515672 + GA-rich Low_complexity Low_complexity 3 66 0 1263 152 126 34 chr12 139271423 139271692 -4514763 + AluSg1 SINE Alu 1 294 -15 290 283 94 22 chr12 139271769 139271907 -4514548 - L1MC/D LINE L1 -2054 5754 5607 237 250 0 0 chr12 139272318 139272394 -4514061 + (TA)n Simple_repeat Simple_repeat 1 76 0 2460 138 71 43 chr12 139274075 139274207 -4512248 - MER4B LTR ERV1 0 779 652 2286 77 0 3 chr12 139274207 139274528 -4511927 - AluY SINE Alu 0 320 1 2460 138 71 43 chr12 139274528 139274990 -4511465 - MER4B LTR ERV1 -127 652 1 471 103 0 103 chr12 139275301 139275355 -4511100 - MADE1 DNA Mariner 0 80 37 2415 100 0 0 chr12 139275355 139275656 -4510799 + AluSg SINE Alu 4 304 -6 471 103 0 103 chr12 139275656 139275688 -4510767 - MADE1 DNA Mariner -43 37 3 1007 148 0 0 chr12 139277256 139277405 -4509050 + FRAM SINE Alu 5 153 -23 274 211 132 0 chr12 139278157 139278170 -4508285 - L1MA4A LINE L1 -27 6276 6264 2999 150 69 13 chr12 139278170 139278724 -4507731 - L1PB4 LINE L1 -24 6132 5548 183 80 0 0 chr12 139279291 139279316 -4507139 + (TC)n Simple_repeat Simple_repeat 2 26 0 523 165 16 28 chr12 139279874 139280056 -4506399 + (TG)n Simple_repeat Simple_repeat 1 180 0 234 121 35 17 chr12 139280134 139280192 -4506263 + (TG)n Simple_repeat Simple_repeat 2 60 0 420 181 48 12 chr12 139280254 139280594 -4505861 + (TG)n Simple_repeat Simple_repeat 1 352 0 329 143 39 50 chr12 139280658 139280840 -4505615 + (TG)n Simple_repeat Simple_repeat 1 180 0 246 262 107 0 chr12 139281401 139281429 -4505026 - L1M4 LINE L1 -3064 3082 3058 2348 96 0 13 chr12 139281429 139281742 -4504713 - AluY SINE Alu -2 309 1 246 262 107 0 chr12 139281742 139281816 -4504639 - L1M4 LINE L1 -3088 3058 2969 238 344 72 15 chr12 139282353 139282548 -4503907 - MIR SINE MIR 0 262 57 * 569 255 35 33 chr12 139282543 139282727 -4503728 - MIR SINE MIR -62 146 16 252 0 0 0 chr12 139285603 139285631 -4500824 + (TA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr12 139287276 139287299 -4499156 + AT_rich Low_complexity Low_complexity 1 23 0 1685 129 47 0 chr12 139287544 139287608 -4498847 - AluSx SINE Alu 0 577 517 1030 117 11 6 chr12 139287608 139287787 -4498668 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1685 129 47 0 chr12 139287787 139288072 -4498383 - AluSx SINE Alu -60 517 38 480 289 63 0 chr12 139288485 139288627 -4497828 + MLT1J LTR MaLR 184 334 -177 2343 100 0 0 chr12 139288876 139289176 -4497279 - AluSg SINE Alu -10 300 1 2426 85 0 0 chr12 139290013 139290308 -4496147 + AluSc SINE Alu 1 295 -14 3143 186 25 83 chr12 139290459 139291015 -4495440 - L1MB7 LINE L1 -7 6177 5687 2441 75 0 3 chr12 139291015 139291322 -4495133 - AluY SINE Alu 0 311 6 3143 186 25 83 chr12 139291322 139291618 -4494837 - L1MB7 LINE L1 -497 5687 5375 23 0 0 0 chr12 139291795 139291818 -4494637 + AT_rich Low_complexity Low_complexity 1 23 0 5758 135 28 19 chr12 139291841 139293615 -4492840 - L1PA11 LINE L1 -79 6095 4306 774 244 0 6 chr12 139293617 139293785 -4492670 - L1MB7 LINE L1 -1254 4892 4726 3223 119 8 0 chr12 139293804 139294275 -4492180 - L1PB2 LINE L1 -3 6148 5674 306 73 0 0 chr12 139294275 139294316 -4492139 + (TC)n Simple_repeat Simple_repeat 2 42 0 2101 101 11 0 chr12 139294316 139294594 -4491861 - AluSp SINE Alu -32 281 1 1270 64 17 6 chr12 139294594 139294766 -4491689 - L1PB2 LINE L1 -462 5689 5516 * 2880 226 22 1 chr12 139294758 139295429 -4491026 - L1MB7 LINE L1 -1443 4703 4019 1986 142 4 0 chr12 139295888 139296169 -4490286 - AluSx SINE Alu -30 282 1 212 327 96 10 chr12 139296474 139296578 -4489877 - L2 LINE L2 0 3272 3160 216 0 0 0 chr12 139296785 139296809 -4489646 + (CA)n Simple_repeat Simple_repeat 2 25 0 453 234 78 31 chr12 139297271 139297537 -4488918 - L2 LINE L2 -246 3067 2790 1000 274 121 43 chr12 139297538 139298002 -4488453 + MLT1J LTR MaLR 1 500 -11 571 332 15 0 chr12 139298013 139298209 -4488246 - L2 LINE L2 -521 2793 2595 350 63 0 111 chr12 139298209 139298272 -4488183 - MLT2B2 LTR ERVL 0 515 459 2100 165 87 7 chr12 139298331 139298738 -4487717 - MSTB1 LTR MaLR 0 432 2 1272 207 82 31 chr12 139298755 139298993 -4487462 - MLT2D LTR ERVL -41 373 110 2735 102 8 3 chr12 139298993 139299366 -4487089 - THE1C LTR MaLR 0 375 1 1272 207 82 31 chr12 139299366 139299479 -4486976 - MLT2D LTR ERVL -304 110 4 280 322 131 5 chr12 139300523 139300722 -4485733 + MIR SINE MIR 10 233 -29 488 183 30 26 chr12 139301194 139301432 -4485023 + CT-rich Low_complexity Low_complexity 1 239 0 751 265 93 23 chr12 139302306 139302959 -4483496 + L2 LINE L2 2601 3311 -2 2493 82 7 0 chr12 139304281 139304586 -4481869 + AluSg SINE Alu 1 307 -3 297 0 0 0 chr12 139305360 139305393 -4481062 + (TG)n Simple_repeat Simple_repeat 2 34 0 381 283 61 28 chr12 139305818 139305998 -4480457 - MIR SINE MIR -21 241 56 2177 124 55 6 chr12 139306033 139306380 -4480075 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr12 139306832 139306862 -4479593 + AT_rich Low_complexity Low_complexity 1 30 0 324 0 0 0 chr12 139307112 139307148 -4479307 + (CA)n Simple_repeat Simple_repeat 2 37 0 681 241 12 0 chr12 139307203 139307365 -4479090 + MER3 DNA MER1_type 6 122 -87 318 368 24 0 chr12 139307377 139307543 -4478912 + MLT1K LTR MaLR 46 215 -373 308 304 139 0 chr12 139307825 139307940 -4478515 - L2 LINE L2 0 3313 3183 1234 146 12 61 chr12 139309380 139309626 -4476829 - MER46A DNA MER2_type 0 236 3 328 340 67 67 chr12 139310354 139310420 -4476035 - L2 LINE L2 -28 3244 3179 2243 116 3 0 chr12 139310420 139310721 -4475734 + AluSg SINE Alu 1 302 -8 328 340 67 67 chr12 139310721 139310907 -4475548 - L2 LINE L2 -92 3180 2992 315 214 10 19 chr12 139311065 139311168 -4475287 + CT-rich Low_complexity Low_complexity 1 102 0 301 216 20 29 chr12 139312226 139312328 -4474127 + (TTA)n Simple_repeat Simple_repeat 1 101 0 344 289 0 39 chr12 139313514 139313618 -4472837 + MIR3 SINE MIR 86 185 -23 382 340 99 38 chr12 139313618 139314095 -4472360 - L2 LINE L2 0 3313 2799 1120 172 48 41 chr12 139314482 139314796 -4471659 + MER33 DNA MER1_type 6 321 -3 388 314 109 38 chr12 139315173 139315412 -4471043 + MIR SINE MIR 7 262 0 261 264 14 0 chr12 139316018 139316090 -4470365 - MIR SINE MIR -14 248 176 275 235 29 0 chr12 139316275 139316343 -4470112 - MIR SINE MIR -97 165 96 279 277 146 19 chr12 139317255 139317522 -4468933 - LTR33 LTR ERVL -67 454 154 465 244 25 16 chr12 139317742 139317914 -4468541 - MIR SINE MIR -24 238 9 840 336 59 26 chr12 139318047 139318386 -4468069 + MLT1K LTR MaLR 1 350 -238 1618 206 6 19 chr12 139318386 139318402 -4468053 - AluJo SINE Alu -5 307 292 207 114 0 0 chr12 139318402 139318437 -4468018 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1618 206 6 19 chr12 139318437 139318731 -4467724 - AluJo SINE Alu -20 292 1 638 228 62 28 chr12 139318746 139318957 -4467498 - L1MB7 LINE L1 -10 6174 5957 396 240 136 0 chr12 139318961 139319086 -4467369 + MLT1K LTR MaLR 334 475 -113 277 325 164 9 chr12 139319977 139320208 -4466247 - MLT1L LTR MaLR -135 480 214 226 250 28 14 chr12 139320308 139320380 -4466075 - MLT1L LTR MaLR -540 75 3 351 302 69 9 chr12 139320865 139320981 -4465474 + MIR SINE MIR 105 227 -35 279 231 176 28 chr12 139321438 139321546 -4464909 - L2 LINE L2 -35 3237 3114 1533 100 32 23 chr12 139321571 139321791 -4464664 + AluSq SINE Alu 82 303 -10 619 200 54 60 chr12 139321839 139322024 -4464431 - MER20 DNA MER1_type -6 213 30 1280 199 87 74 chr12 139322139 139322587 -4463868 - MLT1C LTR MaLR -10 457 4 271 349 81 17 chr12 139322657 139322892 -4463563 - L2 LINE L2 -337 2977 2728 2301 119 0 0 chr12 139323903 139324205 -4462250 - AluSg SINE Alu -8 302 1 312 246 86 113 chr12 139324313 139324569 -4461886 - MER112 DNA MER1_type -8 252 4 2577 49 0 7 chr12 139324962 139325268 -4461187 - AluY SINE Alu -7 304 1 2172 128 16 43 chr12 139325598 139325972 -4460483 + THE1B LTR MaLR 1 364 0 878 245 115 42 chr12 139326260 139326685 -4459770 - MLT1C LTR MaLR -6 461 6 365 256 12 0 chr12 139326836 139326918 -4459537 + MIR SINE MIR 59 141 -121 238 289 160 5 chr12 139326918 139327118 -4459337 + L2 LINE L2 2995 3313 0 2224 256 30 42 chr12 139327385 139327481 -4458974 + MER82 DNA MER2_type 1 97 -556 729 202 0 8 chr12 139327481 139327610 -4458845 + FLAM_C SINE Alu 2 129 -4 2224 256 30 42 chr12 139327610 139328174 -4458281 + MER82 DNA MER2_type 97 653 0 515 152 98 27 chr12 139329275 139329387 -4457068 + MER3 DNA MER1_type 90 209 0 240 151 19 57 chr12 139329340 139329393 -4457062 - MER3 DNA MER1_type -117 92 42 * 490 222 0 11 chr12 139329720 139329900 -4456555 + (TG)n Simple_repeat Simple_repeat 1 178 0 234 309 0 5 chr12 139329912 139330128 -4456327 + (TG)n Simple_repeat Simple_repeat 1 214 0 180 0 0 0 chr12 139330909 139330929 -4455526 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 209 330 82 0 chr12 139331981 139332078 -4454377 + MIR SINE MIR 81 185 -77 475 306 8 8 chr12 139333463 139333597 -4452858 - MIR SINE MIR -21 241 108 239 226 75 0 chr12 139333624 139333677 -4452778 + L2 LINE L2 3256 3312 -1 1897 159 0 38 chr12 139333708 139334022 -4452433 + AluJo SINE Alu 7 308 -4 2161 116 7 0 chr12 139334388 139334680 -4451775 + AluSg SINE Alu 3 296 -14 398 272 123 15 chr12 139335067 139335262 -4451193 - MER102a DNA MER1_type -23 307 92 267 288 0 0 chr12 139335272 139335331 -4451124 + polypyrimidine Low_complexity Low_complexity 4 62 0 207 0 0 0 chr12 139336004 139336027 -4450428 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 357 298 54 75 chr12 139336028 139336323 -4450132 - L2 LINE L2 -17 3296 3008 * 402 270 190 0 chr12 139336296 139336459 -4449996 + L2 LINE L2 3110 3303 -10 1612 203 27 0 chr12 139336725 139337026 -4449429 - AluJo SINE Alu -2 310 2 1131 251 45 65 chr12 139337030 139337539 -4448916 - MLT1D LTR MaLR -2 503 5 394 310 49 15 chr12 139337539 139337742 -4448713 - L2 LINE L2 -571 2743 2534 418 241 215 38 chr12 139337886 139338044 -4448411 + MER5A DNA MER1_type 3 188 -1 664 266 48 89 chr12 139338397 139338645 -4447810 - MIR SINE MIR -5 257 20 500 186 31 10 chr12 139338667 139338764 -4447691 + MER58 DNA MER1_type 1 99 -2321 261 164 148 0 chr12 139338776 139338837 -4447618 + MER58 DNA MER1_type 2318 2387 -33 480 48 0 0 chr12 139338894 139338957 -4447498 + (TC)n Simple_repeat Simple_repeat 1 63 0 1733 88 9 0 chr12 139339542 139339770 -4446685 + MER30 DNA MER1_type 1 230 0 443 264 39 85 chr12 139340502 139340809 -4445646 - MLT1J LTR MaLR -107 404 112 2043 135 85 15 chr12 139340830 139341170 -4445285 - THE1B LTR MaLR 0 364 1 220 234 21 35 chr12 139341970 139342115 -4444340 + (TTATA)n Simple_repeat Simple_repeat 5 147 0 2308 158 0 3 chr12 139342290 139342657 -4443798 - MER47A DNA MER2_type 0 366 1 1671 72 4 72 chr12 139343167 139343439 -4443016 + L1PA8 LINE L1 5924 6178 0 610 298 64 0 chr12 139343442 139343660 -4442795 - MIR SINE MIR -10 252 21 309 290 0 10 chr12 139344332 139344432 -4442023 + MER97b DNA MER1_type? 57 155 -898 236 204 0 0 chr12 139345019 139345068 -4441387 - MLT1K LTR MaLR -91 497 449 360 205 0 98 chr12 139345257 139345369 -4441086 + U13 snRNA snRNA 2 102 -2 601 294 16 3 chr12 139345426 139345615 -4440840 + MIR SINE MIR 13 202 -60 1075 229 68 57 chr12 139346548 139346884 -4439571 + MER58B DNA MER1_type 1 340 -1 849 151 47 112 chr12 139347299 139347440 -4439015 - MER20 DNA MER1_type 0 219 97 2033 131 3 22 chr12 139347440 139347753 -4438702 - AluSx SINE Alu -2 310 4 849 151 47 112 chr12 139347753 139347843 -4438612 - MER20 DNA MER1_type -122 97 3 572 222 141 56 chr12 139347913 139348111 -4438344 + MER58C DNA MER1_type 1 215 0 1180 277 120 23 chr12 139348139 139348746 -4437709 - MER20B DNA MER1_type -62 721 56 1737 206 96 35 chr12 139348746 139349080 -4437375 + MLT1D LTR MaLR 21 392 -113 1470 97 0 0 chr12 139349080 139349286 -4437169 - L1PA12 LINE L1 0 6168 5963 1737 206 96 35 chr12 139349286 139349408 -4437047 + MLT1D LTR MaLR 392 505 0 183 295 39 0 chr12 139350479 139350557 -4435898 - MIR SINE MIR -96 166 86 1067 172 30 10 chr12 139350767 139350965 -4435490 - MER20 DNA MER1_type 0 219 18 474 251 48 18 chr12 139352273 139352440 -4434015 - MER113 DNA MER1_type? -93 428 257 21 36 0 0 chr12 139352513 139352541 -4433914 + AT_rich Low_complexity Low_complexity 1 28 0 354 322 57 105 chr12 139353114 139353428 -4433027 - L2 LINE L2 -1 3271 2973 248 307 45 0 chr12 139353540 139353628 -4432827 - MIR SINE MIR -18 244 153 592 299 62 22 chr12 139353651 139353862 -4432593 + MIR SINE MIR 13 235 -27 2575 114 11 6 chr12 139353862 139354221 -4432234 + THE1B LTR MaLR 1 361 -3 592 299 62 22 chr12 139354221 139354233 -4432222 + MIR SINE MIR 235 245 -17 1405 200 46 33 chr12 139354338 139354703 -4431752 - MLT1H LTR MaLR -193 402 21 392 275 85 43 chr12 139356268 139356479 -4429976 - Charlie8 DNA MER1_type -2191 226 7 4627 237 99 53 chr12 139356977 139357223 -4429232 - L1MC4 LINE L1 -1 8041 7808 2311 73 0 11 chr12 139357223 139357509 -4428946 - AluSc SINE Alu -26 283 1 4627 237 99 53 chr12 139357509 139359234 -4427221 - L1MC4 LINE L1 -234 7808 6165 2304 138 25 0 chr12 139359234 139359589 -4426866 + THE1B LTR MaLR 1 364 0 4627 237 99 53 chr12 139359589 139359822 -4426633 - L1MC4 LINE L1 -1877 6165 5944 2570 68 0 3 chr12 139359822 139360130 -4426325 + AluY SINE Alu 1 307 -4 4627 237 99 53 chr12 139360130 139360904 -4425551 - L1MC4 LINE L1 -2098 5944 4900 792 164 0 41 chr12 139360917 139361063 -4425392 + FLAM_C SINE Alu 4 143 0 286 263 0 0 chr12 139361263 139361343 -4425112 + MER116 DNA Mariner 1 80 0 668 301 16 23 chr12 139364295 139364551 -4421904 + MIR SINE MIR 9 262 0 232 250 0 0 chr12 139365251 139365303 -4421152 + CT-rich Low_complexity Low_complexity 1 52 0 745 235 11 11 chr12 139365348 139365527 -4420928 - L1MD3 LINE L1 -5 7990 7812 25 0 0 0 chr12 139365702 139365727 -4420728 + AT_rich Low_complexity Low_complexity 1 25 0 357 220 140 10 chr12 139365833 139365933 -4420522 - L2 LINE L2 -34 3279 3167 378 285 71 90 chr12 139366248 139366571 -4419884 - MER113 DNA MER1_type? -71 450 134 733 280 239 19 chr12 139366585 139366720 -4419735 - L2 LINE L2 -4 3309 3205 2021 130 0 10 chr12 139366720 139367012 -4419443 + AluSq SINE Alu 1 289 -24 733 280 239 19 chr12 139367012 139367627 -4418828 - L2 LINE L2 -108 3205 2381 275 193 39 88 chr12 139367627 139367808 -4418647 - MER113 DNA MER1_type? -349 172 1 1343 170 0 0 chr12 139367810 139368028 -4418427 - L1PB3 LINE L1 0 6154 5937 521 111 0 0 chr12 139368028 139368100 -4418355 + L1P5 LINE L1 5718 5789 -365 29 0 0 0 chr12 139368579 139368608 -4417847 + AT_rich Low_complexity Low_complexity 1 29 0 359 287 0 28 chr12 139368666 139368774 -4417681 + L2 LINE L2 3206 3310 -3 963 203 18 37 chr12 139369485 139369702 -4416753 - MER20 DNA MER1_type -3 216 4 836 115 0 0 chr12 139370417 139370530 -4415925 + FLAM_A SINE Alu 20 132 -10 2329 68 0 45 chr12 139370571 139370880 -4415575 + AluY SINE Alu 11 305 -6 2160 199 28 21 chr12 139371053 139371521 -4414934 + L1MB7 LINE L1 5662 6132 -52 1119 237 60 70 chr12 139372346 139372759 -4413696 - MLT1C LTR MaLR 0 467 59 198 0 0 0 chr12 139374197 139374219 -4412236 + (TG)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 139374219 139374241 -4412214 + AT_rich Low_complexity Low_complexity 1 22 0 183 222 0 56 chr12 139374933 139374987 -4411468 - MIR SINE MIR -63 145 95 318 306 92 76 chr12 139375197 139375511 -4410944 - MLT1K LTR MaLR -269 319 1 405 278 162 12 chr12 139375552 139375725 -4410730 + MIR SINE MIR 48 246 -16 887 198 9 91 chr12 139375926 139376158 -4410297 + MER20 DNA MER1_type 7 219 0 974 271 34 37 chr12 139377236 139377333 -4409122 + MER93a LTR ERV1 76 172 -230 14484 137 20 29 chr12 139377333 139378354 -4408101 + Tigger1 DNA MER2_type 1 1030 -1388 2022 106 0 7 chr12 139378354 139378628 -4407827 - AluSx SINE Alu -8 304 33 14484 137 20 29 chr12 139378628 139379806 -4406649 + Tigger1 DNA MER2_type 1030 2178 -240 387 0 0 0 chr12 139379806 139379849 -4406606 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 14484 137 20 29 chr12 139379849 139380084 -4406371 + Tigger1 DNA MER2_type 2178 2414 -4 974 271 34 37 chr12 139380084 139380314 -4406141 + MER93a LTR ERV1 172 402 0 427 176 106 0 chr12 139380999 139381084 -4405371 - MER5A DNA MER1_type -1 188 95 2146 94 45 0 chr12 139381104 139381391 -4405064 - AluSq SINE Alu -13 300 1 1914 125 3 62 chr12 139381404 139381725 -4404730 - AluSx SINE Alu -10 302 1 786 132 16 0 chr12 139381757 139381878 -4404577 + MLT1C LTR MaLR 1 123 -344 780 203 0 0 chr12 139381942 139382080 -4404375 + MLT1C LTR MaLR 330 467 0 245 196 0 0 chr12 139382080 139382131 -4404324 - MER5A DNA MER1_type -138 51 1 9727 47 5 0 chr12 139382135 139384111 -4402344 + L1PA6 LINE L1 4172 6153 -1 418 247 91 88 chr12 139384177 139384497 -4401958 - MLT1L LTR MaLR -127 488 168 2445 137 35 24 chr12 139384965 139385390 -4401065 + MSTB1 LTR MaLR 1 430 -2 1168 178 37 12 chr12 139385398 139385639 -4400816 - L1MB5 LINE L1 -1 6173 5927 486 298 67 35 chr12 139387095 139387350 -4399105 - LTR67 LTR ERVL -4 553 291 499 277 0 0 chr12 139387399 139387518 -4398937 - LTR67 LTR ERVL -356 201 83 2062 117 28 0 chr12 139387570 139387860 -4398595 + AluSq SINE Alu 1 298 -15 440 310 58 35 chr12 139387902 139388128 -4398327 + MER102b DNA MER1_type 91 321 -20 1704 102 12 35 chr12 139388550 139388804 -4397651 + AluSx SINE Alu 35 282 -30 34 0 0 0 chr12 139388804 139388838 -4397617 + AT_rich Low_complexity Low_complexity 1 34 0 317 262 63 63 chr12 139389180 139389306 -4397149 - MER5B DNA MER1_type -3 175 50 478 271 100 57 chr12 139389358 139389511 -4396944 + L1MC4 LINE L1 7544 7689 -353 1094 169 10 20 chr12 139389511 139389712 -4396743 - L1MB5 LINE L1 0 6174 5976 478 271 100 57 chr12 139389712 139389909 -4396546 + L1MC4 LINE L1 7689 7909 -133 207 200 0 0 chr12 139389909 139389944 -4396511 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 201 39 0 0 chr12 139389945 139389971 -4396484 + (GA)n Simple_repeat Simple_repeat 1 26 0 1524 100 25 8 chr12 139389991 139390230 -4396225 + L1PB2 LINE L1 5907 6149 -2 318 344 15 30 chr12 139390349 139390480 -4395975 + MER5B DNA MER1_type 48 176 -2 268 280 18 89 chr12 139390506 139390674 -4395781 + L2 LINE L2 2858 3013 -300 1673 166 14 14 chr12 139390734 139391023 -4395432 - AluJo SINE Alu -23 289 1 596 229 14 21 chr12 139394286 139394426 -4392029 + MER63 DNA MER1_type 1 765 -71 2665 10 0 3 chr12 139394511 139394801 -4391654 - AluYb8 SINE Alu 0 318 30 296 268 14 0 chr12 139394953 139395024 -4391431 - MIR SINE MIR -141 121 50 1589 257 77 13 chr12 139395052 139395522 -4390933 - MLT1H LTR MaLR -10 539 40 289 256 70 116 chr12 139395681 139395703 -4390752 + MER102a DNA MER1_type 92 113 -1304 2263 53 0 0 chr12 139395703 139395969 -4390486 + AluY SINE Alu 44 309 -2 289 256 70 116 chr12 139395969 139396188 -4390267 + MER102a DNA MER1_type 113 322 -8 866 236 15 5 chr12 139396878 139397081 -4389374 + MER3 DNA MER1_type 1 205 -4 297 294 57 21 chr12 139398584 139398778 -4387677 - L2 LINE L2 0 3313 3113 26 0 0 0 chr12 139398862 139398888 -4387567 + AT_rich Low_complexity Low_complexity 1 26 0 1637 138 7 36 chr12 139398907 139399183 -4387272 - AluJb SINE Alu -25 287 20 208 277 0 96 chr12 139399194 139399277 -4387178 + T-rich Low_complexity Low_complexity 1 75 0 281 316 0 37 chr12 139399341 139399477 -4386978 + T-rich Low_complexity Low_complexity 1 131 0 1154 128 151 89 chr12 139399684 139399942 -4386513 + AluSx SINE Alu 30 303 -9 288 279 51 30 chr12 139400030 139400227 -4386228 - MER113 DNA MER1_type? -278 243 43 424 299 94 13 chr12 139400379 139400613 -4385842 - MLT1H1 LTR MaLR -3 552 300 376 266 79 7 chr12 139400736 139400875 -4385580 - MLT1H1 LTR MaLR -444 151 3 264 261 29 0 chr12 139401412 139401481 -4384974 - MIR SINE MIR -3 259 189 250 261 57 115 chr12 139401515 139401672 -4384783 + MLT1L LTR MaLR 4 151 -464 460 275 129 30 chr12 139401680 139401913 -4384542 - MLT1F LTR MaLR -12 530 275 413 320 47 0 chr12 139403226 139403376 -4383079 + MER117 DNA MER1_type 27 183 -14 2027 225 70 49 chr12 139403532 139403589 -4382866 - L1ME2 LINE L1 -17 6147 6093 1754 175 0 9 chr12 139403589 139403904 -4382551 - AluJb SINE Alu 0 312 1 2027 225 70 49 chr12 139403904 139404500 -4381955 - L1ME2 LINE L1 -71 6093 5480 2166 52 0 11 chr12 139404519 139404789 -4381666 + AluY SINE Alu 32 298 -13 344 228 114 26 chr12 139404816 139404930 -4381525 - MIR SINE MIR -61 201 78 302 161 46 58 chr12 139405366 139405540 -4380915 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 697 261 60 15 chr12 139405830 139406029 -4380426 + MER63A DNA MER1_type 3 210 0 429 217 114 72 chr12 139406061 139406227 -4380228 - MLT1J LTR MaLR -330 181 9 182 262 213 0 chr12 139406398 139406459 -4379996 - MIR SINE MIR -116 146 73 294 309 64 84 chr12 139406646 139406809 -4379646 - L2 LINE L2 -804 2510 2354 2193 96 17 0 chr12 139406809 139407110 -4379345 + AluSg SINE Alu 1 306 -4 294 309 64 84 chr12 139407110 139407257 -4379198 - L2 LINE L2 -960 2354 2206 1178 251 95 26 chr12 139407348 139407694 -4378761 - MLT1K LTR MaLR -23 565 196 254 245 0 0 chr12 139407823 139407876 -4378579 - MLT1K LTR MaLR -529 59 7 447 331 77 28 chr12 139408771 139408952 -4377503 + MER91A DNA MER1_type 1 190 -6 1613 126 4 15 chr12 139409289 139409572 -4376883 - AluSx SINE Alu 0 312 36 386 284 142 17 chr12 139410031 139410270 -4376185 - MLT1J LTR MaLR 0 511 243 2215 99 0 0 chr12 139410513 139410817 -4375638 - AluSq SINE Alu -9 304 1 507 272 147 27 chr12 139410992 139411216 -4375239 + MLT1J2 LTR MaLR 200 450 0 1444 191 0 53 chr12 139411669 139411989 -4374466 + AluJo SINE Alu 7 309 -3 1982 129 0 7 chr12 139412395 139412698 -4373757 - AluSx SINE Alu -11 301 1 500 240 34 29 chr12 139413115 139413290 -4373165 + MER96B DNA MER1_type? 2 177 -240 1665 121 55 31 chr12 139413726 139414015 -4372440 - AluJb SINE Alu -16 296 1 277 299 333 0 chr12 139415034 139415151 -4371304 - L2 LINE L2 0 3272 3117 2303 83 0 3 chr12 139415515 139415816 -4370639 - AluSp SINE Alu -13 300 1 207 0 0 0 chr12 139415827 139415850 -4370605 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr12 139416059 139416091 -4370364 + AT_rich Low_complexity Low_complexity 1 32 0 1491 136 128 4 chr12 139416528 139416793 -4369662 - AluJo SINE Alu -14 298 1 525 267 0 0 chr12 139416838 139417014 -4369441 + (TATG)n Simple_repeat Simple_repeat 3 178 0 191 323 18 0 chr12 139416975 139417142 -4369313 + (CATATA)n Simple_repeat Simple_repeat 2 171 0 * 655 233 121 34 chr12 139417924 139418130 -4368325 - MER58A DNA MER1_type 0 224 1 960 197 22 6 chr12 139418200 139418383 -4368072 - MER20 DNA MER1_type 0 219 34 284 114 38 127 chr12 139418391 139418470 -4367985 - MER20 DNA MER1_type -142 77 6 933 285 20 4 chr12 139418801 139419050 -4367405 + MIR SINE MIR 4 256 -6 283 278 102 0 chr12 139419576 139419684 -4366771 + MER103 DNA DNA 3 121 -45 698 249 120 9 chr12 139420089 139420314 -4366141 - MLT1C LTR MaLR 0 467 218 534 305 63 17 chr12 139420923 139421162 -4365293 - MLT1C LTR MaLR -255 250 1 842 196 21 62 chr12 139421284 139421478 -4364977 - MER5A DNA MER1_type -3 186 1 1046 199 24 81 chr12 139422471 139422767 -4363688 + L1MB7 LINE L1 5890 6168 -16 318 300 125 12 chr12 139422954 139423114 -4363341 - MIR SINE MIR -41 221 44 318 327 103 36 chr12 139423857 139424022 -4362433 + MER5B DNA MER1_type 2 177 -1 656 245 156 62 chr12 139424242 139424658 -4361797 - MLT1H LTR MaLR -2 547 93 2045 123 0 7 chr12 139424751 139425075 -4361380 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 139425480 139425502 -4360953 + AT_rich Low_complexity Low_complexity 1 22 0 731 264 13 64 chr12 139426210 139426233 -4360222 + MIR SINE MIR 14 37 -225 2427 90 33 0 chr12 139426233 139426568 -4359887 + L1PA13 LINE L1 5818 6163 0 1093 271 46 18 chr12 139426573 139426902 -4359553 + MER58B DNA MER1_type 2 339 -2 731 264 13 64 chr12 139426902 139427107 -4359348 + MIR SINE MIR 41 236 -26 1503 187 0 7 chr12 139427171 139427444 -4359011 + AluJo SINE Alu 3 273 -39 267 250 26 53 chr12 139428177 139428253 -4358202 + L2 LINE L2 3198 3271 -1 264 279 164 50 chr12 139428419 139428620 -4357835 - MIR SINE MIR -33 229 6 213 366 15 15 chr12 139428715 139428846 -4357609 - MIR SINE MIR -101 161 31 4289 86 13 107 chr12 139429175 139429931 -4356524 - L1P LINE L1 -2075 4071 3387 1668 143 0 78 chr12 139430155 139430462 -4355993 + AluJo SINE Alu 1 283 -29 226 269 0 0 chr12 139430938 139431016 -4355439 + GA-rich Low_complexity Low_complexity 1 78 0 1340 187 141 21 chr12 139431460 139431786 -4354669 - MLT1A1 LTR MaLR 0 365 1 5544 73 7 7 chr12 139431916 139432673 -4353782 + L1PA5 LINE L1 5398 6154 0 579 307 56 17 chr12 139433424 139433655 -4352800 + MIR SINE MIR 15 254 -8 437 290 0 0 chr12 139434839 139434946 -4351509 - L2 LINE L2 -546 2768 2662 35 74 0 11 chr12 139435797 139435855 -4350600 + AT_rich Low_complexity Low_complexity 1 59 -35 2109 117 0 0 chr12 139435855 139436145 -4350310 - AluSx SINE Alu -22 290 1 35 74 0 11 chr12 139436145 139436181 -4350274 + AT_rich Low_complexity Low_complexity 59 94 0 339 197 40 13 chr12 139436255 139436331 -4350124 + MER3 DNA MER1_type 5 82 -127 602 231 0 8 chr12 139436406 139436523 -4349932 - MER63 DNA MER1_type -320 742 1 504 242 40 0 chr12 139436527 139436651 -4349804 + MER3 DNA MER1_type 81 209 0 243 196 22 0 chr12 139436612 139436658 -4349797 - MER3 DNA MER1_type -122 87 41 * 298 265 154 68 chr12 139436673 139436835 -4349620 + L1ME3 LINE L1 5903 6078 -84 264 167 0 0 chr12 139436872 139436920 -4349535 + (TA)n Simple_repeat Simple_repeat 1 48 0 234 174 0 0 chr12 139437011 139437057 -4349398 + (CA)n Simple_repeat Simple_repeat 1 46 0 405 0 0 0 chr12 139437602 139437647 -4348808 + (TG)n Simple_repeat Simple_repeat 2 46 0 1145 138 18 49 chr12 139438806 139439031 -4347424 - MER20 DNA MER1_type 0 219 2 2155 107 0 0 chr12 139439047 139439347 -4347108 + AluSx SINE Alu 1 300 -12 282 95 0 0 chr12 139439511 139439553 -4346902 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1871 141 0 3 chr12 139439560 139439843 -4346612 - AluJo SINE Alu -24 288 7 205 260 0 20 chr12 139439911 139439961 -4346494 - L3 LINE CR1 -296 1281 1233 954 244 69 25 chr12 139440368 139440688 -4345767 + MER63B DNA MER1_type 6 339 -97 298 276 0 10 chr12 139440735 139440833 -4345622 + MER63B DNA MER1_type 314 410 -25 282 287 274 0 chr12 139440880 139441044 -4345411 - MIR SINE MIR -6 256 48 180 111 0 0 chr12 139441194 139441221 -4345234 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 1858 130 13 3 chr12 139441808 139442109 -4344346 + AluSc SINE Alu 1 304 -5 882 223 83 50 chr12 139442109 139442446 -4344009 - LTR37A LTR ERV1 -57 369 22 1115 188 8 16 chr12 139442610 139442855 -4343600 + AluSx SINE Alu 34 276 -36 497 294 156 9 chr12 139443170 139443381 -4343074 - MIR SINE MIR 0 262 21 202 217 0 0 chr12 139443382 139443428 -4343027 + (TTG)n Simple_repeat Simple_repeat 1 46 0 2287 166 3 0 chr12 139443525 139443916 -4342539 - L1MB7 LINE L1 -16 6168 5777 645 202 20 56 chr12 139444536 139444734 -4341721 + MER113 DNA MER1_type? 33 223 -298 1937 128 0 0 chr12 139445193 139445505 -4340950 - AluSx SINE Alu 0 312 1 452 200 9 27 chr12 139446102 139446212 -4340243 - MER103 DNA DNA -10 156 49 407 264 111 21 chr12 139446671 139446815 -4339640 + MIR SINE MIR 75 231 -31 1707 47 0 23 chr12 139446815 139447060 -4339395 + AluY SINE Alu 74 313 0 805 191 116 20 chr12 139447433 139447632 -4338823 - MER20 DNA MER1_type 0 219 2 489 275 110 24 chr12 139448681 139449015 -4337440 + L1MC4a LINE L1 5196 5562 -735 948 152 0 41 chr12 139449022 139449067 -4337388 - FRAM SINE Alu -148 164 119 2537 104 8 6 chr12 139449067 139449421 -4337034 + THE1A LTR MaLR 1 355 0 948 152 0 41 chr12 139449421 139449546 -4336909 - FRAM SINE Alu -193 119 1 504 286 97 5 chr12 139449549 139449755 -4336700 + L1MC4a LINE L1 5554 5778 -343 262 279 52 32 chr12 139449763 139449917 -4336538 - Charlie7 DNA MER1_type 0 2612 2456 245 244 0 64 chr12 139450928 139451006 -4335449 + L2 LINE L2 3010 3082 -190 296 294 26 40 chr12 139451354 139451622 -4334833 - MLT1H LTR MaLR -219 376 115 264 276 41 56 chr12 139452148 139452342 -4334113 + L1MC4a LINE L1 5746 5798 -323 1701 191 9 12 chr12 139452342 139452688 -4333767 + L1MB3 LINE L1 5839 6183 0 264 276 41 56 chr12 139452688 139452713 -4333742 + L1MC4a LINE L1 5798 5822 -299 219 230 48 16 chr12 139452915 139453041 -4333414 + (TA)n Simple_repeat Simple_repeat 1 130 0 1456 228 16 38 chr12 139453794 139454167 -4332288 - MLT1A1 LTR MaLR 0 365 1 227 206 15 44 chr12 139454167 139454235 -4332220 - MER113 DNA MER1_type? -45 476 411 344 217 19 87 chr12 139454383 139454544 -4331911 - MER113 DNA MER1_type? -368 153 4 246 231 31 15 chr12 139454633 139454698 -4331757 - MIR SINE MIR -73 189 124 1684 156 21 7 chr12 139454759 139455047 -4331408 + AluJb SINE Alu 1 292 -20 42741 52 6 0 chr12 139455194 139460459 -4325996 - L1P LINE L1 -852 5294 1 4307 208 60 30 chr12 139460697 139460877 -4325578 + L1MB7 LINE L1 4070 4243 -1941 1953 142 17 0 chr12 139460877 139461172 -4325283 + AluSx SINE Alu 1 300 -12 4307 208 60 30 chr12 139461172 139461748 -4324707 + L1MB7 LINE L1 4243 4800 -1384 4656 143 33 6 chr12 139461748 139462559 -4323896 - L1MA4 LINE L1 -4 6296 5464 4307 208 60 30 chr12 139462559 139463590 -4322865 + L1MB7 LINE L1 4800 5918 -266 356 246 63 16 chr12 139463591 139463717 -4322738 + MLT2E LTR ERVL 497 628 0 198 283 0 0 chr12 139464387 139464440 -4322015 - MER5A DNA MER1_type -63 126 74 307 214 39 39 chr12 139464464 139464567 -4321888 + L1MC5 LINE L1 7647 7749 -212 223 184 0 0 chr12 139464575 139464613 -4321842 + MER5B DNA MER1_type 131 168 -10 216 352 80 0 chr12 139464666 139464754 -4321701 - L2 LINE L2 -60 3212 3118 223 286 83 0 chr12 139465940 139466024 -4320431 + MIR3 SINE MIR 111 201 -7 690 259 92 0 chr12 139466090 139466317 -4320138 - MIR SINE MIR -3 259 5 445 248 0 31 chr12 139466326 139466455 -4320000 - MLT1G LTR MaLR -24 518 394 205 243 0 0 chr12 139466509 139466546 -4319909 + polypyrimidine Low_complexity Low_complexity 1 37 0 861 230 7 82 chr12 139466555 139466924 -4319531 - MLT1G LTR MaLR -286 304 1 1477 199 46 51 chr12 139466929 139467293 -4319162 - MLT1B LTR MaLR 0 390 27 270 0 0 0 chr12 139467293 139467323 -4319132 + (TGGGGG)n Simple_repeat Simple_repeat 5 34 0 1477 199 46 51 chr12 139467323 139467350 -4319105 - MLT1B LTR MaLR -363 27 1 340 255 10 29 chr12 139467566 139467668 -4318787 - LTR67 LTR ERVL -1 556 457 250 319 75 21 chr12 139468051 139468145 -4318310 + MIR SINE MIR 164 262 0 558 286 91 72 chr12 139469093 139469664 -4316791 + MLT1K LTR MaLR 3 584 -4 342 67 0 0 chr12 139469860 139469905 -4316550 + (T)n Simple_repeat Simple_repeat 1 45 0 1902 131 92 9 chr12 139470544 139470872 -4315583 - THE1A LTR MaLR 0 355 1 351 113 0 0 chr12 139471320 139471373 -4315082 + (CATGT)n Simple_repeat Simple_repeat 5 57 0 281 356 0 0 chr12 139471425 139471540 -4314915 + L2 LINE L2 3158 3272 0 1196 177 94 131 chr12 139471620 139472100 -4314355 - MER4C LTR ERV1 -3 462 1 193 323 32 0 chr12 139473725 139473787 -4312668 - L2 LINE L2 -2 3311 3248 816 268 59 88 chr12 139473869 139474391 -4312064 - MER77 LTR ERV1 -6 599 93 1025 275 63 82 chr12 139474629 139475308 -4311147 - L1MC4a LINE L1 -1675 6133 5468 468 299 30 0 chr12 139476790 139476924 -4309531 - MIR SINE MIR -43 219 82 416 211 203 8 chr12 139477247 139477375 -4309080 - L2 LINE L2 -3 3310 3158 438 277 96 81 chr12 139477776 139478026 -4308429 + MLT1L LTR MaLR 266 492 -19 2280 64 3 7 chr12 139478035 139478331 -4308124 + AluY SINE Alu 1 295 -16 673 281 96 30 chr12 139478644 139479053 -4307402 + L1ME2 LINE L1 5657 6092 -74 1633 178 10 17 chr12 139479112 139479404 -4307051 + AluJo SINE Alu 1 290 -22 1770 130 3 40 chr12 139479423 139479770 -4306685 + AluSx SINE Alu 2 312 0 962 158 12 0 chr12 139479770 139479935 -4306520 + AluSg/x SINE Alu 134 300 -12 291 282 73 0 chr12 139480057 139480167 -4306288 + L1MC4 LINE L1 7923 8040 -2 434 88 15 0 chr12 139481192 139481260 -4305195 + (TG)n Simple_repeat Simple_repeat 1 69 0 589 252 40 45 chr12 139481298 139481520 -4304935 + MIR SINE MIR 41 261 -1 335 239 37 52 chr12 139481580 139481714 -4304741 - L1MC4a LINE L1 -1884 5924 5793 536 248 26 0 chr12 139481750 139481867 -4304588 + MER94 DNA DNA 2 121 -13 624 330 69 20 chr12 139481927 139482275 -4304180 - MLT1L LTR MaLR -218 397 33 511 293 207 23 chr12 139482743 139483009 -4303446 + MLT1J LTR MaLR 1 315 -196 728 218 25 18 chr12 139483021 139483167 -4303288 - MER20 DNA MER1_type 0 219 78 235 233 137 0 chr12 139483167 139483240 -4303215 - LTR19A LTR ERV1 0 486 404 385 227 0 0 chr12 139483420 139483495 -4302960 - MER20 DNA MER1_type -144 75 1 270 176 0 0 chr12 139483623 139483674 -4302781 + (TG)n Simple_repeat Simple_repeat 2 52 0 862 50 0 58 chr12 139483689 139483810 -4302645 - L1PA6 LINE L1 -64 6090 5977 21 0 0 0 chr12 139484132 139484153 -4302302 + AT_rich Low_complexity Low_complexity 1 21 0 244 266 31 0 chr12 139485131 139485195 -4301260 - MLT1K LTR MaLR -1 587 522 3158 176 2 7 chr12 139485209 139485767 -4300688 + L1MB3 LINE L1 5618 6172 -11 330 277 44 83 chr12 139485777 139486045 -4300410 - MLT1K LTR MaLR -62 526 234 1686 153 0 41 chr12 139486045 139486365 -4300090 + AluJo SINE Alu 1 307 -5 330 277 44 83 chr12 139486365 139486423 -4300032 - MLT1K LTR MaLR -354 234 175 355 296 54 36 chr12 139487378 139487601 -4298854 + MLT1L LTR MaLR 24 250 -365 390 42 0 0 chr12 139487646 139487694 -4298761 + (TC)n Simple_repeat Simple_repeat 1 48 0 1038 266 130 31 chr12 139488440 139488526 -4297929 - L2 LINE L2 -11 3302 3226 1796 184 25 8 chr12 139488526 139488885 -4297570 - MLT1A1 LTR MaLR 0 365 1 1038 266 130 31 chr12 139488885 139489252 -4297203 - L2 LINE L2 -87 3226 2804 186 349 45 0 chr12 139489280 139489346 -4297109 - MIR SINE MIR -178 84 16 300 200 0 0 chr12 139489992 139490062 -4296393 + (TG)n Simple_repeat Simple_repeat 2 71 0 493 266 19 93 chr12 139490151 139490365 -4296090 + MIR SINE MIR 30 227 -35 923 189 31 66 chr12 139490884 139491111 -4295344 - MER20 DNA MER1_type 0 219 1 53 17 0 0 chr12 139491445 139491505 -4294950 + AT_rich Low_complexity Low_complexity 1 60 0 390 259 89 76 chr12 139491609 139491829 -4294626 + L1MC5 LINE L1 7307 7536 -425 2049 112 26 7 chr12 139491829 139492133 -4294322 + AluSx SINE Alu 1 310 -2 390 259 89 76 chr12 139492133 139492295 -4294160 + L1MC5 LINE L1 7536 7694 -267 394 291 104 22 chr12 139492301 139492435 -4294020 - LTR33 LTR ERVL -343 178 34 1552 187 49 49 chr12 139492604 139492767 -4293688 + MER63B DNA MER1_type 1 163 -899 2099 112 0 3 chr12 139492767 139493070 -4293385 - AluSg SINE Alu -8 302 1 1552 187 49 49 chr12 139493070 139493297 -4293158 + MER63B DNA MER1_type 162 391 -45 326 330 0 0 chr12 139493857 139493957 -4292498 + (CA)n Simple_repeat Simple_repeat 1 100 0 2277 87 0 6 chr12 139494684 139494995 -4291460 + AluSx SINE Alu 1 309 -3 1728 168 48 68 chr12 139495717 139496115 -4290340 - MLT1B LTR MaLR 0 390 1 407 141 13 0 chr12 139496230 139496308 -4290147 + (CA)n Simple_repeat Simple_repeat 1 79 0 6929 56 16 13 chr12 139497551 139497912 -4288543 + L1PA6 LINE L1 5127 5486 -668 2068 100 14 0 chr12 139497912 139498203 -4288252 + AluY SINE Alu 1 295 -16 6929 56 16 13 chr12 139498203 139498864 -4287591 + L1PA6 LINE L1 5486 6153 -1 246 81 0 0 chr12 139499072 139499109 -4287346 + (TG)n Simple_repeat Simple_repeat 2 38 0 4294 157 23 3 chr12 139499140 139499846 -4286609 - MER72 LTR ERV1 0 722 3 871 235 96 75 chr12 139499900 139500266 -4286189 + L1MD2 LINE L1 5922 6300 -59 1072 165 61 152 chr12 139500266 139500456 -4285999 - AluJo SINE Alu -4 298 149 2006 106 0 11 chr12 139500456 139500739 -4285716 - AluSq SINE Alu -26 287 8 1072 165 61 152 chr12 139500739 139500876 -4285579 - AluJo SINE Alu -153 149 1 871 235 96 75 chr12 139500876 139500938 -4285517 + L1MD2 LINE L1 6300 6359 0 2823 249 131 35 chr12 139500948 139501657 -4284798 - HAL1 LINE L1 -84 2423 1784 2074 106 0 7 chr12 139501657 139501950 -4284505 + AluY SINE Alu 1 291 -20 2823 249 131 35 chr12 139501950 139502573 -4283882 - HAL1 LINE L1 -723 1784 962 2101 120 0 0 chr12 139502574 139502874 -4283581 - AluSc SINE Alu -9 300 1 926 249 43 31 chr12 139502979 139503236 -4283219 - MER21B LTR ERV1 0 863 604 450 185 0 0 chr12 139503237 139503367 -4283088 + CT-rich Low_complexity Low_complexity 2 131 0 2837 187 70 25 chr12 139503367 139503938 -4282517 - MER21B LTR ERV1 -265 598 2 493 318 88 4 chr12 139503940 139504179 -4282276 - HAL1 LINE L1 -1618 889 631 538 269 87 44 chr12 139504345 139504620 -4281835 - HAL1 LINE L1 -2127 380 94 23 0 0 0 chr12 139504620 139504643 -4281812 + AT_rich Low_complexity Low_complexity 1 23 0 1652 151 0 0 chr12 139504644 139504902 -4281553 - AluSx SINE Alu -28 284 27 2029 122 0 3 chr12 139504902 139505205 -4281250 + AluSc SINE Alu 1 302 -7 249 94 0 0 chr12 139505206 139505238 -4281217 - AluSx SINE Alu -262 37 6 245 302 23 12 chr12 139505261 139505347 -4281108 - HAL1 LINE L1 -2404 103 17 675 251 62 43 chr12 139505544 139505755 -4280700 - MIR SINE MIR -1 261 47 285 198 31 83 chr12 139505926 139506022 -4280433 - MER20 DNA MER1_type -122 97 7 667 271 72 39 chr12 139506958 139507346 -4279109 - L1ME4a LINE L1 -1 6120 5720 5118 124 24 5 chr12 139507348 139508132 -4278323 - L1PA16 LINE L1 -9 6157 5359 277 291 47 0 chr12 139508137 139508223 -4278232 - L1ME4a LINE L1 -395 5726 5637 926 156 19 0 chr12 139509117 139509271 -4277184 - MLT1D LTR MaLR -317 188 32 1539 65 0 42 chr12 139509750 139509965 -4276490 + AluY SINE Alu 100 305 -6 727 182 84 0 chr12 139510884 139511027 -4275428 - MLT1D LTR MaLR -325 180 26 1517 205 67 15 chr12 139511079 139511406 -4275049 - MER2 DNA MER2_type 0 344 1 199 304 0 18 chr12 139511892 139511948 -4274507 - L2 LINE L2 -1 3271 3217 300 305 91 46 chr12 139512118 139512315 -4274140 - MIR SINE MIR -21 241 36 1392 213 30 60 chr12 139512448 139512684 -4273771 - MLT1B LTR MaLR 0 390 169 1824 144 7 13 chr12 139512684 139512982 -4273473 - AluJb SINE Alu -16 296 1 1392 213 30 60 chr12 139512982 139513145 -4273310 - MLT1B LTR MaLR -221 169 3 532 200 40 118 chr12 139513275 139513570 -4272885 + LTR16A1 LTR ERVL 203 456 -1 377 197 73 124 chr12 139514896 139515004 -4271451 + MER113 DNA MER1_type? 127 239 -282 1856 112 36 33 chr12 139515004 139515308 -4271147 + AluSx SINE Alu 1 305 -7 377 197 73 124 chr12 139515308 139515429 -4271026 + MER113 DNA MER1_type? 239 344 -177 1495 108 50 14 chr12 139515429 139515651 -4270804 + MER30 DNA MER1_type 1 230 0 377 197 73 124 chr12 139515651 139515679 -4270776 + MER113 DNA MER1_type? 344 372 -149 407 270 181 23 chr12 139516674 139516889 -4269566 - Charlie8 DNA MER1_type -2134 283 35 1716 181 3 10 chr12 139518090 139518394 -4268061 - AluJb SINE Alu -10 302 1 823 226 162 36 chr12 139518911 139519371 -4267084 + MLT1G1 LTR MaLR 34 542 -13 417 318 55 55 chr12 139520286 139520487 -4265968 + MIR SINE MIR 2 202 -60 2649 113 3 0 chr12 139520629 139520992 -4265463 + THE1B LTR MaLR 1 364 0 672 71 0 0 chr12 139521476 139521575 -4264880 + (CA)n Simple_repeat Simple_repeat 2 100 0 578 294 55 44 chr12 139521604 139521947 -4264508 - L1MC4a LINE L1 -1926 5882 5536 591 286 131 47 chr12 139522250 139522345 -4264110 + L2 LINE L2 2627 2713 -600 1815 142 3 0 chr12 139522345 139522627 -4263828 + AluJo SINE Alu 1 283 -29 591 286 131 47 chr12 139522627 139523145 -4263310 + L2 LINE L2 2713 3313 0 185 227 125 34 chr12 139523140 139523228 -4263227 - MIR SINE MIR -58 204 109 * 690 260 123 43 chr12 139525136 139525574 -4260881 - MLT1J LTR MaLR -9 502 30 431 269 123 15 chr12 139526047 139526177 -4260278 + MIR SINE MIR 109 252 -10 1330 233 29 37 chr12 139526183 139526238 -4260217 - MLT1A2 LTR MaLR 0 374 320 1069 31 78 0 chr12 139526238 139526367 -4260088 + MER85 DNA T2_type 1 139 0 1330 233 29 37 chr12 139526367 139526688 -4259767 - MLT1A2 LTR MaLR -54 320 1 402 264 138 6 chr12 139527025 139527184 -4259271 + MIR SINE MIR 62 241 -21 304 327 35 9 chr12 139527215 139527328 -4259127 + MLT1E LTR MaLR 1 116 -477 22 56 0 0 chr12 139527364 139527400 -4259055 + AT_rich Low_complexity Low_complexity 1 36 0 1283 243 23 13 chr12 139527526 139527826 -4258629 + MLT1E LTR MaLR 285 587 -6 277 289 96 64 chr12 139527949 139528136 -4258319 - MIR SINE MIR -50 212 20 276 132 0 0 chr12 139528253 139528282 -4258173 + (A)n Simple_repeat Simple_repeat 1 32 -21 1905 146 0 0 chr12 139528282 139528562 -4257893 - AluSx SINE Alu -27 285 6 276 132 0 0 chr12 139528562 139528585 -4257870 + (A)n Simple_repeat Simple_repeat 31 53 0 547 290 55 16 chr12 139529112 139529295 -4257160 + MIR SINE MIR 4 193 -69 792 179 142 23 chr12 139529715 139529794 -4256661 + L1MA9 LINE L1 6068 6136 -176 432 67 0 0 chr12 139529794 139529854 -4256601 + (CA)n Simple_repeat Simple_repeat 1 60 0 792 179 142 23 chr12 139529854 139529992 -4256463 + L1MA9 LINE L1 6136 6311 -1 902 245 91 8 chr12 139530830 139531071 -4255384 - MIR SINE MIR 0 262 2 328 289 281 20 chr12 139531286 139531684 -4254771 - L2 LINE L2 -5 3308 2807 206 236 36 0 chr12 139531895 139531950 -4254505 + GA-rich Low_complexity Low_complexity 5 61 0 455 242 39 55 chr12 139532950 139533132 -4253323 - MLT1J LTR MaLR -94 417 239 363 278 53 47 chr12 139533225 139533394 -4253061 - MLT1J LTR MaLR -331 180 11 713 302 24 24 chr12 139533435 139533723 -4252732 + MLT1L LTR MaLR 328 615 0 1621 142 25 7 chr12 139533757 139534038 -4252417 - L1MB3 LINE L1 -3 6180 5895 438 311 130 30 chr12 139534126 139534425 -4252030 - MLT1K LTR MaLR -114 474 146 261 61 0 0 chr12 139534441 139534474 -4251981 - MLT1K LTR MaLR -410 178 146 329 135 225 22 chr12 139534533 139534622 -4251833 - MLT1K LTR MaLR -336 252 146 290 198 161 40 chr12 139534677 139534829 -4251626 - MLT1K LTR MaLR -336 252 146 298 218 119 59 chr12 139534940 139535041 -4251414 - MLT1K LTR MaLR -336 252 146 384 243 199 15 chr12 139535097 139535233 -4251222 - MLT1K LTR MaLR -336 252 92 6406 33 0 0 chr12 139535240 139535974 -4250481 + L1PA5 LINE L1 5410 6143 -11 28 29 0 0 chr12 139535974 139536009 -4250446 + AT_rich Low_complexity Low_complexity 1 35 0 1347 112 49 0 chr12 139536020 139536244 -4250211 + L1MB3 LINE L1 5941 6175 -8 244 315 54 0 chr12 139536329 139536421 -4250034 - MLT1K LTR MaLR -490 98 2 565 294 38 6 chr12 139536683 139536843 -4249612 - MIR SINE MIR -1 261 97 326 207 17 121 chr12 139537184 139537300 -4249155 + MER102b DNA MER1_type 237 340 -1 287 216 4 0 chr12 139537551 139537612 -4248843 + AluJ/monomer SINE Alu 1 45 -256 233 242 50 42 chr12 139737631 139737751 -4048704 - MLT1K LTR MaLR -102 486 366 5936 245 72 29 chr12 139739011 139741733 -4044722 - L1MB7 LINE L1 -19 6165 3264 2180 125 7 3 chr12 139741733 139742038 -4044417 - AluSx SINE Alu -6 306 1 5936 245 72 29 chr12 139742038 139742690 -4043765 - L1MB7 LINE L1 -2920 3264 2642 913 98 79 37 chr12 139743096 139743235 -4043220 - LTR34 LTR ERV1 -528 171 23 2288 107 0 3 chr12 139743235 139743543 -4042912 - AluSx SINE Alu -5 307 1 913 98 79 37 chr12 139743543 139743567 -4042888 - LTR34 LTR ERV1 -676 23 1 615 313 39 26 chr12 139743731 139743961 -4042494 - MIR SINE MIR -15 247 15 381 309 166 28 chr12 139744063 139744280 -4042175 + MIR SINE MIR 6 252 -10 32 67 0 0 chr12 139744687 139744747 -4041708 + AT_rich Low_complexity Low_complexity 1 60 0 423 0 0 0 chr12 139744810 139744857 -4041598 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 219 313 0 0 chr12 139745419 139745499 -4040956 - L2 LINE L2 -213 3059 2980 630 138 0 0 chr12 139746367 139746476 -4039979 + (TG)n Simple_repeat Simple_repeat 2 110 0 376 261 42 14 chr12 139746897 139747039 -4039416 - MER68 LTR ERV1 -190 372 227 280 250 120 0 chr12 139747378 139747570 -4038885 + LTR33A LTR ERVL 266 480 -43 6662 124 22 21 chr12 139751801 139751939 -4034516 - HSMAR2 DNA Mariner -190 1112 976 2239 116 3 13 chr12 139751939 139752241 -4034214 + AluSg SINE Alu 1 299 -11 6662 124 22 21 chr12 139752241 139753212 -4033243 - HSMAR2 DNA Mariner -326 976 2 14794 138 37 30 chr12 139753220 139753971 -4032484 + Tigger2 DNA MER2_type 2 746 -1972 186 43 0 0 chr12 139753971 139753994 -4032461 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 14794 138 37 30 chr12 139753994 139755941 -4030514 + Tigger2 DNA MER2_type 746 2718 0 204 125 0 0 chr12 139755944 139755976 -4030479 + (CA)n Simple_repeat Simple_repeat 2 33 0 1366 100 67 9 chr12 139756286 139756496 -4029959 + MER30 DNA MER1_type 1 222 -8 499 204 10 10 chr12 139757229 139757332 -4029123 - MLT1J1 LTR MaLR -127 319 217 2037 146 3 13 chr12 139757955 139758263 -4028192 - AluJo SINE Alu -7 305 1 380 274 22 15 chr12 139758336 139758471 -4027984 - MIR SINE MIR -1 261 126 228 267 122 0 chr12 139758543 139758633 -4027822 - MLT1I LTR MaLR -28 381 281 24 0 0 0 chr12 139760989 139761013 -4025442 + AT_rich Low_complexity Low_complexity 1 24 0 315 271 88 20 chr12 139764332 139764481 -4021974 - MIR SINE MIR -62 146 11 367 306 8 0 chr12 139765411 139765532 -4020923 - MLT1I LTR MaLR -202 207 86 830 269 78 46 chr12 139765730 139766142 -4020313 + MLT1K LTR MaLR 158 582 -6 325 311 196 0 chr12 139766249 139766458 -4019997 + MIR SINE MIR 7 256 -6 1570 178 12 38 chr12 139767068 139767388 -4019067 + AluJo SINE Alu 1 312 0 2015 88 25 22 chr12 139767459 139767733 -4018722 + AluSx SINE Alu 38 312 0 183 156 0 0 chr12 139767775 139767807 -4018648 + (ATG)n Simple_repeat Simple_repeat 1 32 0 * 880 146 0 32 chr12 139767805 139767990 -4018465 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 316 293 6 0 chr12 139767994 139768156 -4018299 + (ATG)n Simple_repeat Simple_repeat 1 163 0 211 191 21 0 chr12 139768437 139768484 -4017971 + MIR SINE MIR 113 160 -102 270 81 0 0 chr12 139768547 139768584 -4017871 + (CA)n Simple_repeat Simple_repeat 1 37 0 643 212 26 0 chr12 139769451 139769602 -4016853 + L1MD1 LINE L1 6085 6239 -3 687 317 73 47 chr12 139769667 139770093 -4016362 + MLT1K LTR MaLR 147 583 -5 630 237 69 12 chr12 139770119 139770292 -4016163 + MLT1K LTR MaLR 401 583 -5 219 304 0 10 chr12 139771895 139771997 -4014458 + (TG)n Simple_repeat Simple_repeat 2 102 0 204 231 198 11 chr12 139772063 139772154 -4014301 + L2 LINE L2 2652 2759 -555 184 254 36 0 chr12 139772285 139772340 -4014115 - MER5A DNA MER1_type -85 104 48 287 297 59 0 chr12 139772659 139772777 -4013678 - LTR67 LTR ERVL -395 162 38 262 224 30 15 chr12 139772890 139772957 -4013498 + L2 LINE L2 2995 3062 -251 222 37 0 0 chr12 139773406 139773433 -4013022 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 3967 117 90 47 chr12 139774134 139774886 -4011569 + LTR1 LTR ERV1 1 785 0 189 0 0 0 chr12 139775774 139775795 -4010660 + (GA)n Simple_repeat Simple_repeat 2 22 0 701 213 43 83 chr12 139776182 139776435 -4010020 + MIR SINE MIR 18 260 -2 1425 185 104 15 chr12 139777078 139777413 -4009042 - MLT1A1 LTR MaLR 0 365 1 1674 231 88 64 chr12 139778454 139779065 -4007390 - MLT1E2 LTR MaLR 0 626 1 254 314 19 19 chr12 139779803 139779908 -4006547 + L2 LINE L2 2435 2539 -775 1219 269 26 12 chr12 139779909 139780255 -4006200 - LTR16C LTR ERVL -2 489 139 498 195 34 47 chr12 139780273 139780422 -4006033 + L1MA10 LINE L1 6188 6334 0 410 326 0 0 chr12 139780684 139780831 -4005624 + (CA)n Simple_repeat Simple_repeat 1 147 0 183 204 0 0 chr12 139780845 139780894 -4005561 + (CA)n Simple_repeat Simple_repeat 1 49 0 579 308 14 24 chr12 139780904 139781115 -4005340 + L2 LINE L2 3105 3313 0 299 297 55 35 chr12 139781390 139781535 -4004920 + MIR SINE MIR 112 259 -3 24 0 0 0 chr12 139782109 139782133 -4004322 + AT_rich Low_complexity Low_complexity 1 24 0 340 276 39 16 chr12 139782428 139782555 -4003900 - MLT1I LTR MaLR -30 379 250 244 190 35 0 chr12 139783906 139783964 -4002491 + MLT1K LTR MaLR 189 248 -340 185 128 0 26 chr12 139785478 139785517 -4000938 + (CA)n Simple_repeat Simple_repeat 2 39 0 315 254 139 33 chr12 139788001 139788123 -3998332 - L2 LINE L2 -1 3271 3137 206 234 21 49 chr12 139788206 139788302 -3998153 - L2 LINE L2 -304 3009 2921 567 270 25 87 chr12 139788338 139788579 -3997876 - MIR SINE MIR -3 259 34 730 265 131 55 chr12 139788706 139789163 -3997292 - MLT1K LTR MaLR -7 581 90 619 263 34 34 chr12 139789492 139789667 -3996788 - MER5B DNA MER1_type -1 177 3 201 152 0 0 chr12 139790097 139790130 -3996325 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 188 211 26 0 chr12 139790694 139790732 -3995723 + L2 LINE L2 3254 3292 -21 677 197 33 20 chr12 139791105 139791257 -3995198 - MER2 DNA MER2_type -1 344 191 650 208 0 97 chr12 139791257 139791401 -3995054 - FLAM_A SINE Alu -12 130 1 513 96 0 0 chr12 139791401 139791474 -3994981 - MER2 DNA MER2_type -143 202 130 292 204 0 0 chr12 139791475 139791529 -3994926 + Tigger5 DNA MER2_type 2 55 -2268 * 341 203 0 0 chr12 139791498 139791567 -3994888 + Tigger5 DNA MER2_type 2251 2319 -4 430 169 0 34 chr12 139791628 139791717 -3994738 + Tigger5 DNA MER2_type 2238 2323 0 * 805 176 8 0 chr12 139791717 139791847 -3994608 - MER2 DNA MER2_type -214 131 1 305 320 31 8 chr12 139791849 139791977 -3994478 + L2 LINE L2 3142 3272 0 186 278 0 69 chr12 139792318 139792390 -3994065 - MER5B DNA MER1_type -98 80 14 236 274 54 74 chr12 139792390 139792686 -3993769 + L1ME4a LINE L1 5817 6106 -15 16922 36 2 0 chr12 139792950 139795739 -3990716 - L1PA5 LINE L1 -4 6150 3357 25 0 0 0 chr12 139795744 139795769 -3990686 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr12 139795804 139795827 -3990628 + (A)n Simple_repeat Simple_repeat 1 23 0 334 208 14 0 chr12 139796681 139796753 -3989702 + MER5A DNA MER1_type 9 81 -108 612 276 58 19 chr12 139796889 139797146 -3989309 - MLT1J LTR MaLR -7 504 238 184 365 78 23 chr12 139797810 139798155 -3988300 + L2 LINE L2 1925 2288 -1026 206 260 0 20 chr12 139798761 139798811 -3987644 + L2 LINE L2 1953 2001 -1313 1057 179 22 6 chr12 139799455 139799634 -3986821 - MER5A DNA MER1_type -7 182 1 377 289 62 0 chr12 139800605 139800733 -3985722 + L2 LINE L2 3137 3272 0 181 227 55 55 chr12 139802038 139802096 -3984359 + L2 LINE L2 2783 2843 -471 1896 173 173 16 chr12 139802096 139802582 -3983873 - MER68 LTR ERV1 0 562 1 181 227 55 55 chr12 139802582 139802633 -3983822 + L2 LINE L2 2842 2892 -422 197 363 167 10 chr12 139802846 139802948 -3983507 + L2 LINE L2 3168 3285 -28 2803 78 75 15 chr12 139802951 139803327 -3983128 + MLT2A1 LTR ERVL 1 353 -91 414 53 0 0 chr12 139803327 139803384 -3983071 + (TA)n Simple_repeat Simple_repeat 1 57 0 231 61 0 0 chr12 139803383 139803416 -3983039 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2803 78 75 15 chr12 139803384 139803451 -3983004 + MLT2A1 LTR ERVL 353 437 -7 245 289 48 82 chr12 139803611 139803964 -3982491 + L2 LINE L2 2883 3223 -90 197 206 44 44 chr12 139804046 139804114 -3982341 + MIR SINE MIR 158 225 -37 918 114 41 0 chr12 139804453 139804576 -3981879 + AluSg/x SINE Alu 157 284 -28 9883 179 37 28 chr12 139804584 139805810 -3980645 + L1M3f LINE L1 16 1229 -5099 1600 181 3 33 chr12 139805810 139806113 -3980342 - AluJb SINE Alu -18 294 1 9883 179 37 28 chr12 139806113 139806228 -3980227 + L1M3f LINE L1 1229 1341 -4987 1931 131 40 40 chr12 139806228 139806603 -3979852 + THE1C LTR MaLR 1 375 0 9883 179 37 28 chr12 139806603 139806671 -3979784 + L1M3f LINE L1 1341 1407 -4921 3917 174 63 63 chr12 139806671 139807625 -3978830 - LTR13 LTR ERVK 0 954 1 9883 179 37 28 chr12 139807625 139807957 -3978498 + L1M3f LINE L1 1407 1734 -4594 2379 105 22 8 chr12 139807957 139808320 -3978135 + L1PA16 LINE L1 5798 6165 -1 9883 179 37 28 chr12 139808320 139810841 -3975614 + L1M3f LINE L1 1734 4229 -2099 1830 145 54 0 chr12 139810841 139811117 -3975338 + AluSx SINE Alu 6 296 -16 2502 62 3 0 chr12 139811120 139811410 -3975045 + AluY SINE Alu 1 291 -20 9883 179 37 28 chr12 139811410 139811653 -3974802 + L1M3f LINE L1 4230 4540 -1788 371 200 40 72 chr12 139812097 139812222 -3974233 + L1MCc LINE L1 606 726 -5182 603 222 113 35 chr12 139812272 139812556 -3973899 + L1MCc LINE L1 1258 1563 -4863 270 85 0 22 chr12 139812551 139812604 -3973851 - L1P LINE L1 -759 5397 5346 * 1993 140 66 6 chr12 139812633 139813019 -3973436 - L1P LINE L1 -748 5406 5000 * 5571 85 10 0 chr12 139813017 139813793 -3972662 + L1PA11 LINE L1 5390 6173 -1 672 246 97 36 chr12 139813822 139814116 -3972339 + L1MCc LINE L1 1711 2098 -4509 1941 189 8 11 chr12 139814116 139814482 -3971973 + MLT1A1 LTR MaLR 1 365 0 672 246 97 36 chr12 139814482 139814585 -3971870 + L1MCc LINE L1 2098 2193 -4414 1033 301 42 16 chr12 139814709 139815293 -3971162 + L1MCc LINE L1 2189 2764 -3662 507 254 55 22 chr12 139815919 139816100 -3970355 + Charlie8 DNA MER1_type 1 187 -2230 2071 130 3 0 chr12 139816602 139816894 -3969561 - AluJo SINE Alu -19 293 1 1755 148 7 30 chr12 139817641 139817945 -3968510 + AluJb SINE Alu 16 312 0 943 209 69 29 chr12 139818766 139818967 -3967488 - MLT1A1 LTR MaLR -1 364 148 2675 123 52 0 chr12 139818967 139819374 -3967081 - MSTA LTR MaLR 0 428 1 943 209 69 29 chr12 139819374 139819449 -3967006 - MLT1A1 LTR MaLR -217 148 77 269 70 0 0 chr12 139819791 139819834 -3966621 + L1MA7 LINE L1 6249 6291 0 465 210 144 11 chr12 139820136 139820317 -3966138 + MLT1K LTR MaLR 81 285 -303 455 254 59 0 chr12 139820632 139820750 -3965705 - L1MD2 LINE L1 -398 5961 5837 926 268 24 0 chr12 139820757 139821048 -3965407 + MER90 LTR ERV1 71 368 -246 745 197 109 62 chr12 139821048 139821094 -3965361 - MSTD LTR MaLR 0 396 354 2047 137 10 7 chr12 139821094 139821393 -3965062 + AluSx SINE Alu 1 300 -12 745 197 109 62 chr12 139821393 139821645 -3964810 - MSTD LTR MaLR -42 354 1 858 234 19 10 chr12 139821646 139821855 -3964600 + MER90 LTR ERV1 365 575 -39 319 273 34 0 chr12 139823654 139823742 -3962713 - MIR SINE MIR -91 171 81 190 216 0 0 chr12 139824810 139824847 -3961608 - L2 LINE L2 -19 3253 3217 194 0 39 0 chr12 139825389 139825415 -3961040 + (CA)n Simple_repeat Simple_repeat 2 28 0 398 331 74 32 chr12 139825549 139825833 -3960622 + MLT1K LTR MaLR 3 298 -290 1435 199 84 16 chr12 139825848 139826170 -3960285 - MER2 DNA MER2_type 0 344 1 612 280 87 14 chr12 139828833 139829051 -3957404 + MIR SINE MIR 22 255 -7 2623 57 0 0 chr12 139829112 139829408 -3957047 - AluY SINE Alu -15 296 1 213 289 79 0 chr12 139829476 139829552 -3956903 + MIR SINE MIR 170 251 -11 1056 144 10 21 chr12 139829588 139830127 -3956328 + (ATGGTG)n Simple_repeat Simple_repeat 1 712 0 915 183 0 0 chr12 139830156 139830336 -3956119 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 960 173 0 0 chr12 139830364 139830737 -3955718 + (ATGGTG)n Simple_repeat Simple_repeat 1 373 0 317 333 16 0 chr12 139830888 139831017 -3955438 + L1MC/D LINE L1 5635 5765 -2043 276 315 74 27 chr12 139831322 139831471 -3954984 + MIR SINE MIR 20 175 -87 2241 141 30 25 chr12 139831767 139832129 -3954326 - THE1B LTR MaLR 0 364 1 312 221 0 0 chr12 139832177 139832245 -3954210 + MLT1I LTR MaLR 341 408 -1 3148 151 22 73 chr12 139837849 139838560 -3947895 - LTR8 LTR ERV1 -1 690 16 310 310 116 8 chr12 139838566 139838695 -3947760 + MIR SINE MIR 88 230 -32 455 371 54 7 chr12 139840769 139841211 -3945244 - L1 LINE L1 -771 5375 4913 406 302 62 42 chr12 139842160 139842352 -3944103 - MER63A DNA MER1_type -9 201 6 271 274 53 18 chr12 139842357 139842470 -3943985 + MIR SINE MIR 107 223 -39 237 200 33 0 chr12 139843082 139843142 -3943313 + MER53 DNA DNA 13 74 -115 359 294 111 7 chr12 139843763 139843916 -3942539 + MLT1K LTR MaLR 11 179 -409 2867 96 0 0 chr12 139844103 139844466 -3941989 + THE1B LTR MaLR 2 364 0 528 305 21 5 chr12 139845398 139845585 -3940870 + L1M4 LINE L1 4589 4778 -1368 321 290 62 71 chr12 139845799 139846023 -3940432 - MER41E LTR ERV1 -236 276 55 250 352 0 0 chr12 139846129 139846220 -3940235 + L1M4 LINE L1 4773 4863 -1283 201 350 0 27 chr12 139846398 139846581 -3939874 + G-rich Low_complexity Low_complexity 1 178 0 201 350 0 27 chr12 139846872 139847055 -3939400 + G-rich Low_complexity Low_complexity 1 178 0 371 299 56 7 chr12 139847639 139847783 -3938672 - MER58B DNA MER1_type -3 338 188 232 309 29 43 chr12 139848332 139848471 -3937984 + LTR67 LTR ERVL 414 550 -7 344 188 0 47 chr12 139848615 139848743 -3937712 + CT-rich Low_complexity Low_complexity 3 124 0 523 331 119 3 chr12 139850603 139850938 -3935517 - L2 LINE L2 -1 3312 2939 1073 235 28 46 chr12 139850974 139851486 -3934969 + L1MCc LINE L1 1208 1713 -4887 539 269 44 19 chr12 139851666 139851826 -3934629 + MIR SINE MIR 80 243 -19 315 65 0 0 chr12 139851840 139851886 -3934569 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 463 305 148 24 chr12 139852047 139852257 -3934198 - MIR SINE MIR 0 262 27 2623 190 24 66 chr12 139852262 139852900 -3933555 - LTR9 LTR ERV1 -1 611 1 3045 167 19 21 chr12 139852984 139853559 -3932896 + MER4B LTR ERV1 1 574 -36 1683 107 14 64 chr12 139854419 139854700 -3931755 - AluSq SINE Alu -8 305 39 2188 108 3 13 chr12 139855372 139855688 -3930767 + AluSp SINE Alu 1 313 0 686 243 25 30 chr12 139856885 139857087 -3929368 - MLT1H1 LTR MaLR -8 547 347 192 340 78 0 chr12 139857819 139857922 -3928533 - L2 LINE L2 0 3272 3162 288 274 111 67 chr12 139858021 139858169 -3928286 + Charlie8 DNA MER1_type 210 371 -2046 216 0 0 0 chr12 139858169 139858193 -3928262 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 288 274 111 67 chr12 139858193 139858252 -3928203 + Charlie8 DNA MER1_type 371 426 -1991 364 271 79 7 chr12 139858290 139858430 -3928025 + MIR SINE MIR 14 163 -99 915 105 0 0 chr12 139858455 139858579 -3927876 - FLAM_C SINE Alu -19 124 1 689 265 112 0 chr12 139858706 139858966 -3927489 - MER113 DNA MER1_type? -228 293 5 489 266 4 3 chr12 139858974 139859104 -3927351 - MIR3 SINE MIR -52 156 25 630 164 13 13 chr12 139859142 139859294 -3927161 + GA-rich Low_complexity Low_complexity 3 154 0 247 300 44 33 chr12 139909978 139910068 -3876387 - L2 LINE L2 0 3272 3182 1327 228 71 38 chr12 139911000 139911511 -3874944 - LTR49 LTR ERV1 -23 572 124 4748 150 53 33 chr12 139911617 139912260 -3874195 - MER4D LTR ERV1 0 903 236 1724 97 130 11 chr12 139912260 139912529 -3873926 - AluSg1 SINE Alu -8 301 1 4748 150 53 33 chr12 139912529 139912770 -3873685 - MER4D LTR ERV1 -667 236 1 1859 138 27 113 chr12 139912903 139913344 -3873111 - MER57A LTR ERV1 0 403 1 835 300 92 21 chr12 139913410 139913833 -3872622 + LTR38 LTR ERV1 98 550 -6 568 186 8 8 chr12 139913906 139914024 -3872431 + MLT1A1 LTR MaLR 2 119 -246 234 270 14 14 chr12 139915258 139915332 -3871123 - Charlie8 DNA MER1_type -2260 157 84 207 219 16 8 chr12 139916494 139916622 -3869833 + (CACCT)n Simple_repeat Simple_repeat 3 131 0 206 324 27 0 chr12 139916965 139917039 -3869416 + L2 LINE L2 2553 2628 -686 193 213 85 0 chr12 139917117 139917164 -3869291 - MER5A DNA MER1_type -119 70 20 294 164 0 0 chr12 139917226 139917281 -3869174 + (CA)n Simple_repeat Simple_repeat 1 55 0 261 290 109 65 chr12 139917340 139917616 -3868839 + L2 LINE L2 2889 3176 -96 224 284 198 17 chr12 139918143 139918259 -3868196 - L2 LINE L2 0 3272 3136 2486 105 31 0 chr12 139918596 139918949 -3867506 - THE1B LTR MaLR 0 364 1 8856 114 55 7 chr12 139918954 139920456 -3865999 - THE1B-int LTR MaLR -6 1574 1 481 272 105 12 chr12 139922183 139922345 -3864110 - MER91B DNA MER1_type -13 177 1 586 299 68 5 chr12 139922346 139922567 -3863888 + L2 LINE L2 3079 3313 0 746 156 11 17 chr12 139923838 139924018 -3862437 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 1070 219 61 28 chr12 139924532 139924924 -3861531 - MER68 LTR ERV1 -149 413 9 377 253 111 0 chr12 139925140 139925302 -3861153 + L1MB2 LINE L1 2034 2213 -4171 21 0 0 0 chr12 139925651 139925672 -3860783 + AT_rich Low_complexity Low_complexity 1 21 0 781 201 52 38 chr12 139926108 139926397 -3860058 + L1MB2 LINE L1 2195 2487 -3897 652 165 22 8 chr12 139926402 139926667 -3859788 - L1MA4A LINE L1 -23 6280 5951 4501 265 53 16 chr12 139926668 139928184 -3858271 + L1MB2 LINE L1 2477 4570 -1812 2218 79 3 10 chr12 139928184 139928487 -3857968 + AluY SINE Alu 1 301 -10 4501 265 53 16 chr12 139928487 139929030 -3857425 + L1MB2 LINE L1 4570 5091 -1291 2170 201 76 14 chr12 139929029 139929592 -3856863 + L1MB2 LINE L1 5810 6407 0 * 438 276 112 30 chr12 139930297 139930595 -3855860 + L2 LINE L2 2716 3038 -275 1374 253 96 7 chr12 139931141 139931580 -3854875 - MER63 DNA MER1_type -71 990 513 1570 191 23 16 chr12 139931590 139931899 -3854556 - AluJb SINE Alu -1 311 1 374 217 0 127 chr12 139932164 139932321 -3854134 - LTR41 LTR ERVL -6 767 631 479 325 6 6 chr12 139932416 139932576 -3853879 - LTR41 LTR ERVL -612 161 2 * 580 328 43 0 chr12 139932576 139932804 -3853651 - MER63 DNA MER1_type -823 238 1 363 281 29 29 chr12 139932862 139933033 -3853422 - L1MC5 LINE L1 -473 7488 7318 239 279 7 0 chr12 139934140 139934294 -3852161 + (TG)n Simple_repeat Simple_repeat 2 156 0 495 318 6 6 chr12 139934317 139934487 -3851968 + (TG)n Simple_repeat Simple_repeat 2 171 0 301 335 11 43 chr12 139934454 139934695 -3851760 + (TATG)n Simple_repeat Simple_repeat 1 233 0 * 190 262 16 0 chr12 139934698 139934820 -3851635 + (TG)n Simple_repeat Simple_repeat 1 124 0 358 351 33 0 chr12 139935086 139935237 -3851218 - Charlie8 DNA MER1_type -2236 181 26 259 256 81 23 chr12 139937659 139937745 -3848710 - MIR SINE MIR -55 207 117 459 224 12 6 chr12 139938808 139938978 -3847477 + GA-rich Low_complexity Low_complexity 2 172 0 266 234 14 106 chr12 139938997 139939138 -3847317 + MLT1K LTR MaLR 394 521 -67 993 101 0 7 chr12 139940865 139941013 -3845442 - THE1B-int LTR MaLR -1433 147 1 2466 124 25 0 chr12 139941013 139941368 -3845087 - THE1B LTR MaLR 0 364 1 1111 232 54 48 chr12 139941620 139942273 -3844182 - MLT1E1 LTR MaLR -16 638 22 2652 150 54 54 chr12 139943270 139943824 -3842631 - MER41A LTR ERV1 0 554 1 2804 171 122 38 chr12 139944310 139944947 -3841508 - LTR8 LTR ERV1 0 691 1 1053 206 10 5 chr12 139945059 139945268 -3841187 + MER2 DNA MER2_type 2 211 -134 2091 108 29 10 chr12 139945293 139945599 -3840856 - AluSx SINE Alu 0 312 1 282 308 39 0 chr12 139945931 139946009 -3840446 + L3b LINE CR1 1501 1581 -2 1461 175 53 10 chr12 139947547 139947850 -3838605 - L1PB3 LINE L1 0 6154 5839 525 200 0 0 chr12 139947850 139947950 -3838505 + L1PB3 LINE L1 5749 5848 -303 183 340 28 0 chr12 139948825 139948931 -3837524 + L2 LINE L2 1987 2095 -1219 694 240 60 30 chr12 139949011 139949211 -3837244 + L1M4b LINE L1 619 824 -6035 568 176 208 0 chr12 139951011 139951136 -3835319 - MLT1A1 LTR MaLR -4 361 211 268 229 239 0 chr12 139951867 139951976 -3834479 + L2 LINE L2 3138 3272 0 371 271 38 41 chr12 139952026 139952192 -3834263 - MER5A DNA MER1_type -3 186 13 266 287 7 0 chr12 139952905 139953048 -3833407 + (CA)n Simple_repeat Simple_repeat 1 144 0 407 254 34 17 chr12 139953558 139953676 -3832779 + MIR SINE MIR 23 142 -120 538 253 109 41 chr12 139953810 139953838 -3832617 - MLT1K LTR MaLR -214 374 349 959 176 151 13 chr12 139953838 139954077 -3832378 + ORSL DNA AcHobo 1 272 -3 538 253 109 41 chr12 139954077 139954269 -3832186 - MLT1K LTR MaLR -239 349 139 446 322 87 0 chr12 139954839 139955022 -3831433 - L1ME LINE L1 -404 5766 5568 265 259 0 0 chr12 139955101 139955159 -3831296 + (CA)n Simple_repeat Simple_repeat 2 59 0 268 284 78 35 chr12 139956421 139956562 -3829893 + MIR SINE MIR 46 192 -70 254 203 102 0 chr12 139957538 139957597 -3828858 - MLT1K LTR MaLR -349 239 175 475 233 40 62 chr12 139957598 139957774 -3828681 - MLT1K LTR MaLR -341 247 76 282 316 53 0 chr12 139958611 139958744 -3827711 + MIR SINE MIR 112 251 -11 3794 40 16 13 chr12 139958766 139959269 -3827186 + LTR6B LTR ERV1 1 558 0 201 253 5 108 chr12 139960659 139960853 -3825602 + C-rich Low_complexity Low_complexity 4 177 0 367 267 68 11 chr12 139961042 139961233 -3825222 - Charlie2 DNA MER1_type -370 2492 2291 192 77 0 0 chr12 139962458 139962484 -3823971 + (CCCTG)n Simple_repeat Simple_repeat 1 26 0 214 300 150 25 chr12 139962923 139963083 -3823372 + L2 LINE L2 2883 3062 -251 1884 181 49 0 chr12 139963462 139963811 -3822644 - MER47A DNA MER2_type 0 366 1 2210 120 0 0 chr12 139963908 139964217 -3822238 + AluSx SINE Alu 1 309 -3 324 331 31 0 chr12 139964338 139964465 -3821990 + L2 LINE L2 3180 3310 -3 1080 137 8 0 chr12 139964471 139964727 -3821728 + (TGGA)n Simple_repeat Simple_repeat 1 258 0 216 250 19 0 chr12 139964762 139964814 -3821641 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 483 87 0 0 chr12 139964839 139964908 -3821547 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 216 250 19 0 chr12 139964944 139964996 -3821459 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 330 115 0 0 chr12 139965021 139965073 -3821382 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 1576 295 56 32 chr12 139965181 139966278 -3820177 - L1ME1 LINE L1 -166 6000 4873 189 244 61 37 chr12 139966804 139966886 -3819569 + MER5B DNA MER1_type 95 178 0 302 210 49 35 chr12 139967518 139967661 -3818794 + (TTGTG)n Simple_repeat Simple_repeat 5 149 0 206 150 0 17 chr12 139967685 139967745 -3818710 + (GTGTG)n Simple_repeat Simple_repeat 4 62 0 233 276 67 0 chr12 139968932 139969037 -3817418 + MIR SINE MIR 36 147 -115 619 223 77 125 chr12 139971625 139971961 -3814494 + MER45C DNA AcHobo 79 398 -555 645 244 18 38 chr12 139972462 139972681 -3813774 + MSTC LTR MaLR 1 238 -219 210 341 12 12 chr12 139973594 139973767 -3812688 + (GGTTG)n Simple_repeat Simple_repeat 3 175 0 206 365 0 0 chr12 139973715 139973819 -3812636 + (GGGTG)n Simple_repeat Simple_repeat 5 108 0 * 925 211 91 45 chr12 139973819 139974084 -3812371 + MSTD LTR MaLR 120 396 0 2068 244 78 2 chr12 139974804 139975394 -3811061 + L1MC3 LINE L1 7149 7783 -2 1057 152 0 0 chr12 139975780 139975945 -3810510 + AluJb SINE Alu 137 301 -11 264 224 0 0 chr12 139975975 139976042 -3810413 + (CATA)n Simple_repeat Simple_repeat 4 70 0 433 288 56 6 chr12 139976106 139976266 -3810189 - L1ME LINE L1 -297 5824 5657 * 520 295 66 21 chr12 139976256 139976504 -3809951 - L1ME4a LINE L1 -295 5826 5557 983 273 113 11 chr12 139977149 139977530 -3808925 - MER63B DNA MER1_type -4 432 13 2194 178 97 0 chr12 139978038 139978449 -3808006 - LTR47A LTR ERVL -1 451 1 2347 71 0 3 chr12 139979237 139979534 -3806921 - AluY SINE Alu -13 298 3 620 264 60 41 chr12 139980447 139980580 -3805875 + L1ME3A LINE L1 5556 5685 -485 2085 87 3 65 chr12 139980580 139980901 -3805554 + AluSq SINE Alu 1 301 -12 620 264 60 41 chr12 139980901 139981036 -3805419 + L1ME3A LINE L1 5685 5829 -341 2517 151 37 16 chr12 139981066 139981243 -3805212 - LTR56 LTR ERV1 0 445 273 2004 113 31 0 chr12 139981243 139981535 -3804920 + AluSx SINE Alu 1 301 -11 2517 151 37 16 chr12 139981535 139981793 -3804662 - LTR56 LTR ERV1 -172 273 1 496 276 40 0 chr12 139981867 139982019 -3804436 + L1ME3A LINE L1 5835 5992 -178 2069 115 16 3 chr12 139982089 139982393 -3804062 - AluSx SINE Alu -4 308 1 968 213 182 0 chr12 139982410 139982663 -3803792 + L1M4 LINE L1 5320 5618 -560 724 223 82 32 chr12 139982666 139982810 -3803645 - MLT1D LTR MaLR -3 502 367 3207 120 57 24 chr12 139982810 139982988 -3803467 + MER1A DNA MER1_type 1 172 -2528 2218 92 0 16 chr12 139982988 139983292 -3803163 + AluSx SINE Alu 1 299 -13 3207 120 57 24 chr12 139983292 139983623 -3802832 + MER1A DNA MER1_type 172 527 0 724 223 82 32 chr12 139983623 139983839 -3802616 - MLT1D LTR MaLR -138 367 80 11502 175 25 51 chr12 139985213 139987717 -3798738 + L1M2a LINE L1 10 2579 -4588 378 0 0 0 chr12 139987717 139987759 -3798696 + (CA)n Simple_repeat Simple_repeat 1 42 0 11502 175 25 51 chr12 139987759 139987992 -3798463 + L1M2a LINE L1 2579 2817 -4350 1775 120 3 108 chr12 139987992 139988118 -3798337 + AluJb SINE Alu 5 143 -159 230 0 33 0 chr12 139988118 139988148 -3798307 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1775 120 3 108 chr12 139988148 139988370 -3798085 + AluJb SINE Alu 143 302 0 11502 175 25 51 chr12 139988370 139988750 -3797705 + L1M2a LINE L1 2817 3206 -3961 1718 187 16 0 chr12 139988750 139989055 -3797400 + AluJb SINE Alu 1 310 -2 11502 175 25 51 chr12 139989055 139989762 -3796693 + L1M2a LINE L1 3206 3744 -3423 478 139 3 39 chr12 139989738 139989854 -3796601 + L1MA5 LINE L1 6749 6829 -326 * 2063 111 11 0 chr12 139989854 139990136 -3796319 + AluSx SINE Alu 1 283 -29 478 139 3 39 chr12 139990136 139990157 -3796298 + L1MA5 LINE L1 6829 6849 -306 2407 136 35 33 chr12 139990321 139990550 -3795905 + L1MA5 LINE L1 6835 7062 -259 1038 66 0 66 chr12 139990550 139990905 -3795550 + AluSc SINE Alu 1 345 0 2407 136 35 33 chr12 139990905 139991158 -3795297 + L1MA5 LINE L1 7062 7319 -2 577 147 0 101 chr12 139991228 139991337 -3795118 - AluJb SINE Alu -23 289 192 1429 170 70 12 chr12 139991344 139991674 -3794781 + MER49 LTR ERV1 575 923 0 387 289 35 85 chr12 139992606 139992776 -3793679 - MER93a-int LTR ERV1 -7288 249 95 2240 197 65 7 chr12 139992776 139993222 -3793233 - MER70A LTR ERVL 0 472 1 387 289 35 85 chr12 139993222 139993311 -3793144 - MER93a-int LTR ERV1 -7442 95 3 475 218 65 35 chr12 139993315 139993485 -3792970 - MER93a LTR ERV1 0 402 228 271 206 87 33 chr12 139993468 139993560 -3792895 - MER93a LTR ERV1 -305 97 1 * 381 325 167 29 chr12 139993756 139994104 -3792351 - L2 LINE L2 -6 3307 2912 21 0 0 0 chr12 139996898 139996919 -3789536 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 139998233 139998264 -3788191 + AT_rich Low_complexity Low_complexity 1 31 0 28 61 0 0 chr12 139999791 139999840 -3786615 + AT_rich Low_complexity Low_complexity 1 49 0 843 154 0 0 chr12 139999840 139999957 -3786498 - FLAM_C SINE Alu -16 117 1 306 143 54 0 chr12 140000537 140000593 -3785862 - MER2 DNA MER2_type -20 325 267 718 195 49 37 chr12 140000593 140000757 -3785698 + MER58B DNA MER1_type 175 340 -1 2245 120 0 10 chr12 140001809 140002118 -3784337 - AluSx SINE Alu -4 308 3 199 213 149 0 chr12 140002592 140002639 -3783816 + L2 LINE L2 3257 3310 -3 196 360 163 6 chr12 140002884 140003056 -3783399 - MIR SINE MIR -10 252 54 1083 232 45 5 chr12 140003059 140003283 -3783172 - MER8 DNA MER2_type 0 239 7 542 281 25 12 chr12 140004280 140004440 -3782015 - MIR SINE MIR -10 252 91 2407 125 49 17 chr12 140004963 140005371 -3781084 - MSTA LTR MaLR 0 428 8 31 26 0 0 chr12 140005681 140005719 -3780736 + AT_rich Low_complexity Low_complexity 1 38 0 1091 165 0 6 chr12 140006369 140006539 -3779916 + AluJo SINE Alu 1 169 -143 559 259 118 44 chr12 140006661 140006755 -3779700 - MIR SINE MIR -6 256 170 2017 160 0 3 chr12 140006755 140007062 -3779393 + AluJb SINE Alu 1 306 -6 559 259 118 44 chr12 140007062 140007195 -3779260 - MIR SINE MIR -92 170 12 310 354 85 38 chr12 140007299 140007618 -3778837 - L1M4 LINE L1 -823 5323 4990 225 262 66 0 chr12 140008863 140008924 -3777531 + L3 LINE CR1 1044 1108 -469 2383 75 0 23 chr12 140010292 140010599 -3775856 - AluSx SINE Alu -12 300 1 1974 133 28 0 chr12 140011457 140011743 -3774712 + AluSx SINE Alu 4 297 -15 1700 187 23 3 chr12 140012785 140013084 -3773371 - AluJb SINE Alu -7 305 1 1775 181 10 7 chr12 140013311 140013610 -3772845 + AluJb SINE Alu 1 300 -12 316 248 15 0 chr12 140014075 140014208 -3772247 + (TCCA)n Simple_repeat Simple_repeat 1 135 0 201 39 0 0 chr12 140014251 140014277 -3772178 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 318 115 0 0 chr12 140014330 140014382 -3772073 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 525 174 7 27 chr12 140014427 140014576 -3771879 + (TCCA)n Simple_repeat Simple_repeat 3 148 0 213 39 0 0 chr12 140014613 140014639 -3771816 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 299 192 13 0 chr12 140014688 140014766 -3771689 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 321 26 0 0 chr12 140016304 140016342 -3770113 + (CA)n Simple_repeat Simple_repeat 2 39 0 293 366 0 0 chr12 140017672 140017825 -3768630 + GA-rich Low_complexity Low_complexity 2 154 0 263 153 123 37 chr12 140017848 140018011 -3768444 + (AGGTG)n Simple_repeat Simple_repeat 4 180 0 264 152 104 49 chr12 140018037 140018201 -3768254 + (AGGTG)n Simple_repeat Simple_repeat 3 175 0 227 188 0 0 chr12 140019358 140019406 -3767049 + CT-rich Low_complexity Low_complexity 2 49 0 193 292 106 44 chr12 140021494 140021607 -3764848 + MIR3 SINE MIR 52 171 -37 340 279 127 5 chr12 140021614 140021811 -3764644 + MLT1K LTR MaLR 26 246 -342 385 257 9 9 chr12 140022679 140022784 -3763671 + (TGAA)n Simple_repeat Simple_repeat 1 105 0 791 192 6 0 chr12 140022784 140022961 -3763494 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 209 297 9 63 chr12 140024604 140024715 -3761740 + MIR SINE MIR 111 215 -47 320 270 0 4 chr12 140026977 140027251 -3759204 + (CA)n Simple_repeat Simple_repeat 1 272 0 222 271 0 0 chr12 140027262 140027402 -3759053 + (CA)n Simple_repeat Simple_repeat 1 140 0 475 294 136 39 chr12 140027848 140028209 -3758246 - MLT1I LTR MaLR -6 403 8 2500 94 0 0 chr12 140028674 140028981 -3757474 - AluSx SINE Alu -5 307 1 1780 151 0 25 chr12 140029981 140030260 -3756195 + AluJb SINE Alu 24 295 -17 521 321 111 65 chr12 140030268 140031016 -3755439 + L1MC4a LINE L1 4055 4836 -1310 416 290 100 42 chr12 140031069 140031218 -3755237 + L1MC4a LINE L1 4905 5044 -1350 1716 130 23 101 chr12 140031218 140031563 -3754892 + AluYb8 SINE Alu 1 318 0 416 290 100 42 chr12 140031563 140031968 -3754487 + L1MC4a LINE L1 5044 5504 -890 2349 94 0 3 chr12 140031968 140032266 -3754189 + AluSg SINE Alu 1 297 -13 416 290 100 42 chr12 140032266 140032419 -3754036 + L1MC4a LINE L1 5504 5647 -747 316 344 16 23 chr12 140032524 140032652 -3753803 + L1MC4a LINE L1 5762 5888 -1920 269 26 0 26 chr12 140032669 140032708 -3753747 + (TG)n Simple_repeat Simple_repeat 2 39 0 1029 259 114 40 chr12 140033086 140033659 -3752796 - L1ME3 LINE L1 -4 6158 5544 651 311 23 4 chr12 140034145 140034405 -3752050 - L1ME3 LINE L1 -581 5583 5319 282 225 14 14 chr12 140035673 140035744 -3750711 + MER5A DNA MER1_type 26 96 -93 396 304 37 37 chr12 140035760 140035974 -3750481 + MLT1J LTR MaLR 62 275 -236 932 148 3 6 chr12 140035974 140036312 -3750143 + (ATG)n Simple_repeat Simple_repeat 1 337 0 1143 164 2 0 chr12 140036335 140036820 -3749635 + (ATG)n Simple_repeat Simple_repeat 1 486 0 768 185 15 0 chr12 140037361 140037491 -3748964 - FLAM_C SINE Alu -1 132 1 301 235 0 20 chr12 140037612 140037714 -3748741 - L1M LINE L1 -2397 5411 5312 312 247 75 63 chr12 140038221 140038300 -3748155 + MER34 LTR ERV1 367 444 -98 2218 113 13 3 chr12 140038300 140038610 -3747845 - AluSp SINE Alu 0 313 1 312 247 75 63 chr12 140038610 140038704 -3747751 + MER34 LTR ERV1 444 542 0 542 111 22 0 chr12 140040438 140040528 -3745927 + 5S rRNA rRNA 1 92 -29 527 230 0 9 chr12 140041684 140041797 -3744658 + L2 LINE L2 3201 3312 -1 719 206 0 8 chr12 140041973 140042099 -3744356 - FLAM_C SINE Alu -17 126 2 2587 65 3 0 chr12 140044532 140044839 -3741616 - AluSx SINE Alu -4 308 1 215 360 23 0 chr12 140047180 140047266 -3739189 + L2 LINE L2 3129 3216 -56 292 341 0 0 chr12 140047934 140048016 -3738439 + MIR3 SINE MIR 81 162 -46 27 49 0 0 chr12 140050430 140050471 -3735984 + AT_rich Low_complexity Low_complexity 1 41 0 244 210 101 100 chr12 140050909 140051290 -3735165 - HAL1b LINE L1 -56 1292 911 269 304 60 79 chr12 140051316 140051512 -3734943 - L1MC/D LINE L1 -1921 5887 5700 1795 123 68 20 chr12 140051512 140051804 -3734651 - AluJo SINE Alu -6 306 1 269 304 60 79 chr12 140051804 140051988 -3734467 - L1MC/D LINE L1 -2108 5700 5514 693 237 115 35 chr12 140052101 140052163 -3734292 - HAL1b LINE L1 -544 804 748 2475 78 10 0 chr12 140052163 140052469 -3733986 - AluY SINE Alu -2 309 1 693 237 115 35 chr12 140052469 140052718 -3733737 - HAL1b LINE L1 -600 748 468 371 303 182 30 chr12 140052831 140053204 -3733251 - HAL1b LINE L1 -762 586 157 463 219 36 138 chr12 140053452 140053587 -3732868 - MER58 DNA MER1_type -2144 276 171 2427 95 13 0 chr12 140053587 140053892 -3732563 - AluSg1 SINE Alu 0 309 1 463 219 36 138 chr12 140053892 140053980 -3732475 - MER58 DNA MER1_type -2249 171 76 1544 179 10 39 chr12 140053980 140054287 -3732168 + AluJo SINE Alu 1 298 -14 2317 139 25 14 chr12 140055427 140055787 -3730668 - THE1B LTR MaLR 0 364 1 11187 91 13 2 chr12 140055790 140057348 -3729107 - THE1B-int LTR MaLR -5 1575 1 2203 144 28 19 chr12 140057348 140057709 -3728746 - THE1B LTR MaLR 0 364 1 706 237 103 22 chr12 140059158 140059390 -3727065 - HAL1 LINE L1 -701 1806 1556 2506 50 7 7 chr12 140059448 140059745 -3726710 + AluY SINE Alu 1 297 -14 212 316 0 0 chr12 140059827 140059884 -3726571 - L2 LINE L2 -77 3236 3180 685 249 73 48 chr12 140060309 140060598 -3725857 - L2 LINE L2 -871 2443 2148 1416 116 228 4 chr12 140060832 140061082 -3725373 - AluSx SINE Alu -6 306 1 1000 235 4 12 chr12 140061663 140061906 -3724549 + Tigger5 DNA MER2_type 2081 2321 -2 364 296 97 36 chr12 140062336 140062583 -3723872 - L2 LINE L2 -4 3268 3007 1305 171 84 45 chr12 140063309 140063595 -3722860 - AluJo SINE Alu -15 297 1 25 0 0 0 chr12 140067198 140067223 -3719232 + AT_rich Low_complexity Low_complexity 1 25 0 2378 115 3 0 chr12 140067245 140067550 -3718905 - AluSx SINE Alu -6 306 1 365 235 43 43 chr12 140067814 140067929 -3718526 + MIR SINE MIR 81 195 -67 708 195 8 0 chr12 140071286 140071414 -3715041 + AluJo/FLAM SINE Alu 5 133 -169 1369 209 0 18 chr12 140071417 140071695 -3714760 + AluJb SINE Alu 1 273 -39 424 277 203 66 chr12 140071732 140072135 -3714320 + L1 LINE L1 3323 3816 -2330 2697 32 0 10 chr12 140072135 140072445 -3714010 + AluY SINE Alu 1 307 -4 424 277 203 66 chr12 140072445 140072568 -3713887 + L1 LINE L1 3816 3921 -2225 529 306 129 39 chr12 140072612 140073063 -3713392 + L1 LINE L1 4905 5407 -714 21 0 0 0 chr12 140073270 140073291 -3713164 + AT_rich Low_complexity Low_complexity 1 21 0 2194 114 0 0 chr12 140073409 140073699 -3712756 + AluSg SINE Alu 1 290 -20 285 337 10 10 chr12 140074390 140074491 -3711964 + MIR SINE MIR 75 175 -87 2040 91 4 4 chr12 140074604 140074869 -3711586 + AluSx SINE Alu 39 303 -9 977 189 0 0 chr12 140074880 140075044 -3711411 + FRAM SINE Alu 1 164 -12 2203 116 0 28 chr12 140075196 140075514 -3710941 - AluSg SINE Alu -1 309 1 216 236 91 0 chr12 140076091 140076146 -3710309 + L2 LINE L2 3213 3272 0 2412 89 0 0 chr12 140076306 140076608 -3709847 + AluY SINE Alu 1 302 -9 2389 83 3 3 chr12 140077826 140078126 -3708329 + AluSq SINE Alu 1 300 -13 1094 168 0 20 chr12 140080173 140080375 -3706080 + L1PA15 LINE L1 5874 6071 -94 2261 101 0 10 chr12 140081301 140081597 -3704858 + AluSx SINE Alu 1 293 -19 1806 57 0 5 chr12 140082058 140082313 -3704142 - AluY SINE Alu 0 327 74 1250 245 45 8 chr12 140083156 140083531 -3702924 - L1MB3 LINE L1 -26 6157 5769 2514 55 0 29 chr12 140084108 140084418 -3702037 - AluSc SINE Alu -8 301 1 1321 204 223 103 chr12 140084925 140085656 -3700799 - LTR1B LTR ERV1 -7 819 1 1871 168 7 13 chr12 140085922 140086226 -3700229 - AluJb SINE Alu -10 302 1 1921 149 3 38 chr12 140088389 140088704 -3697751 + AluSx SINE Alu 1 304 -8 214 289 144 41 chr12 140088754 140088851 -3697604 + L3 LINE CR1 1368 1474 -103 5077 35 0 2 chr12 140089726 140090324 -3696131 - L1PA4 LINE L1 -4 6151 5555 2400 90 0 16 chr12 140091080 140091392 -3695063 - AluSq SINE Alu 0 313 7 2138 102 3 3 chr12 140092342 140092665 -3693790 - AluSq SINE Alu 0 323 1 1356 181 17 60 chr12 140092948 140093247 -3693208 + AluJo SINE Alu 1 286 -26 2701 30 7 0 chr12 140093814 140094116 -3692339 - AluY SINE Alu -7 304 1 23 33 0 0 chr12 140094448 140094478 -3691977 + AT_rich Low_complexity Low_complexity 1 30 0 416 224 93 0 chr12 140094636 140094743 -3691712 + FLAM_A SINE Alu 26 142 0 23 54 0 0 chr12 140095204 140095241 -3691214 + AT_rich Low_complexity Low_complexity 1 37 0 2289 108 0 0 chr12 140095483 140095778 -3690677 + AluSx SINE Alu 6 300 -12 2268 65 43 0 chr12 140096089 140096367 -3690088 + AluY SINE Alu 1 290 -21 270 0 0 0 chr12 140096372 140096402 -3690053 + (TA)n Simple_repeat Simple_repeat 1 30 0 33 73 0 0 chr12 140147040 140147108 -3639347 + AT_rich Low_complexity Low_complexity 1 68 0 2078 123 17 10 chr12 140147283 140147585 -3638870 + AluSx SINE Alu 1 304 -8 205 292 31 0 chr12 140147880 140147945 -3638510 + L2 LINE L2 3202 3268 -4 195 129 0 0 chr12 140151657 140151688 -3634767 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 263 231 58 48 chr12 140154178 140154282 -3632173 - MIR SINE MIR -97 165 61 309 273 73 0 chr12 140154562 140154672 -3631783 + L2 LINE L2 3178 3295 -18 243 0 0 0 chr12 140154677 140154704 -3631751 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 227 289 12 12 chr12 140157014 140157097 -3629358 + MLT1K LTR MaLR 485 567 -21 182 303 92 18 chr12 140158044 140158153 -3628302 + MIR SINE MIR 46 162 -100 475 274 74 68 chr12 140158531 140159203 -3627252 + MER76 LTR ERV 3 678 -10 212 336 76 8 chr12 140159222 140159353 -3627102 + MIR SINE MIR 116 255 -7 501 238 71 43 chr12 140159648 140159858 -3626597 - L1M4 LINE L1 -6313 229 14 21 57 0 0 chr12 140160967 140161002 -3625453 + AT_rich Low_complexity Low_complexity 1 35 0 237 238 0 87 chr12 140161423 140161608 -3624847 + (CACCC)n Simple_repeat Simple_repeat 1 169 0 1880 195 55 11 chr12 140163037 140163416 -3623039 - MSTD LTR MaLR 0 396 1 297 315 11 17 chr12 140163433 140163479 -3622976 + (TATG)n Simple_repeat Simple_repeat 2 47 -131 1743 177 61 0 chr12 140163479 140163824 -3622631 + MER47A DNA MER2_type 1 366 0 297 315 11 17 chr12 140163824 140163955 -3622500 + (TATG)n Simple_repeat Simple_repeat 47 178 0 * 350 286 11 22 chr12 140163826 140164004 -3622451 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 395 252 0 42 chr12 140163880 140164023 -3622432 + (TCTCTG)n Simple_repeat Simple_repeat 6 142 0 2083 166 31 21 chr12 140164246 140164631 -3621824 + MLT1B LTR MaLR 2 390 0 930 240 77 0 chr12 140165390 140165598 -3620857 - MER58A DNA MER1_type 0 224 1 2551 46 0 17 chr12 140165615 140165917 -3620538 - AluY SINE Alu -14 297 1 643 105 16 0 chr12 140166179 140166303 -3620152 + HSATII Satellite Satellite 18 143 -27 306 192 55 0 chr12 140166324 140166397 -3620058 + (CATTC)n Satellite Satellite 2 78 0 1019 119 11 6 chr12 140166404 140167828 -3618627 + HSATII Satellite Satellite 1 1430 -23 980 118 15 15 chr12 140167850 140169231 -3617224 + HSATII Satellite Satellite 1 1381 -44 301 307 84 45 chr12 140169232 140169434 -3617021 - L1MDb LINE L1 -5190 1219 1010 965 114 12 18 chr12 140169450 140171474 -3614981 + HSATII Satellite Satellite 1 2011 -44 899 129 3 17 chr12 140171495 140171845 -3614610 + HSATII Satellite Satellite 1 345 -1 21 57 0 0 chr12 140172251 140172286 -3614169 + AT_rich Low_complexity Low_complexity 1 35 0 271 260 0 82 chr12 140172928 140173124 -3613331 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 * 285 272 46 17 chr12 140173060 140173233 -3613222 + (CACCT)n Simple_repeat Simple_repeat 1 178 0 347 157 27 19 chr12 140173455 140173536 -3612919 - AluS SINE Alu -229 70 1 354 247 123 43 chr12 140173539 140173701 -3612754 + L1MC5 LINE L1 6957 7131 -830 250 356 8 0 chr12 140173703 140173821 -3612634 + L1MC4a LINE L1 7090 7208 -600 2684 181 49 4 chr12 140174754 140175308 -3611147 + L1MB3 LINE L1 5605 6183 0 215 299 70 116 chr12 140175337 140175665 -3610790 - L2 LINE L2 -1381 1933 1621 2480 93 0 0 chr12 140176275 140176585 -3609870 - AluSg SINE Alu 0 310 1 2207 131 0 7 chr12 140177576 140177882 -3608573 + AluSx SINE Alu 1 304 -8 2501 64 0 3 chr12 140177883 140178181 -3608274 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 140178226 140178247 -3608208 + AT_rich Low_complexity Low_complexity 1 21 0 280 222 74 0 chr12 140178590 140178671 -3607784 - L1MB3 LINE L1 -1 6182 6096 1966 153 0 7 chr12 140179171 140179465 -3606990 + AluSx SINE Alu 1 292 -20 2166 113 10 7 chr12 140179528 140179837 -3606618 + AluSx SINE Alu 3 312 0 2110 102 33 23 chr12 140180692 140180995 -3605460 - AluSx SINE Alu -2 310 5 1134 290 94 9 chr12 140183289 140183713 -3602742 + LTR16B LTR ERVL 1 460 -4 2358 101 0 0 chr12 140184611 140184917 -3601538 - AluY SINE Alu -5 306 1 579 223 25 25 chr12 140185021 140185178 -3601277 - FAM SINE Alu -8 41 1 3711 216 96 69 chr12 140187720 140189413 -3597042 + L1MD1 LINE L1 3814 5459 -783 1916 144 105 12 chr12 140189413 140189746 -3596709 - THE1B LTR MaLR 0 364 1 3711 216 96 69 chr12 140189746 140189910 -3596545 + L1MD1 LINE L1 5459 5617 -625 1795 112 115 4 chr12 140189910 140190188 -3596267 + AluSg1 SINE Alu 1 309 0 3711 216 96 69 chr12 140190188 140190683 -3595772 + L1MD1 LINE L1 5617 6242 0 350 182 222 16 chr12 140191840 140192016 -3594439 + L1MDa LINE L1 312 526 -6014 1177 221 71 3 chr12 140192060 140192440 -3594015 + L1MDa LINE L1 855 1260 -5280 1114 184 0 5 chr12 140192440 140192646 -3593809 - MER46A DNA MER2_type -31 205 1 2611 184 42 47 chr12 140192646 140192717 -3593738 + L1MDa LINE L1 1293 1363 -5177 1987 122 7 23 chr12 140192717 140193021 -3593434 + AluSx SINE Alu 1 299 -13 2611 184 42 47 chr12 140193021 140193751 -3592704 + L1MDa LINE L1 1363 2090 -4450 657 221 82 82 chr12 140194394 140194804 -3591651 + MLT1C LTR MaLR 1 383 -7 842 247 56 62 chr12 140196630 140197003 -3589452 - LTR37A LTR ERV1 0 426 56 399 316 47 36 chr12 140197203 140197456 -3588999 + L1MEc LINE L1 35 290 -6106 541 240 65 18 chr12 140197489 140197718 -3588737 + L1MEc LINE L1 378 617 -5779 550 257 68 75 chr12 140197761 140198068 -3588387 + L1ME1 LINE L1 5856 6160 -6 355 260 3 10 chr12 140198198 140198323 -3588132 + L1P1 LINE L1 5354 5470 -685 257 0 0 29 chr12 140200282 140200316 -3586139 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 1983 144 0 6 chr12 140200410 140200722 -3585733 + AluSx SINE Alu 3 312 0 2047 125 60 34 chr12 140201053 140201176 -3585279 + MSTA LTR MaLR 2 120 -308 1951 158 24 0 chr12 140201176 140201505 -3584950 + MER1B DNA MER1_type 1 337 0 2047 125 60 34 chr12 140201505 140201797 -3584658 + MSTA LTR MaLR 120 428 0 270 81 0 0 chr12 140201953 140201990 -3584465 + (ATG)n Simple_repeat Simple_repeat 2 38 0 239 369 57 0 chr12 140202980 140203102 -3583353 - MIR SINE MIR -117 145 17 262 250 183 19 chr12 140206313 140206417 -3580038 + MIR SINE MIR 20 140 -68 964 236 107 70 chr12 140208003 140208490 -3577965 + LTR53 LTR ERVL 4 508 -11 197 346 40 25 chr12 140208668 140208827 -3577628 + MIR SINE MIR 29 191 -67 185 121 0 0 chr12 140209593 140209626 -3576829 - L2 LINE L2 0 3272 3240 232 232 27 89 chr12 140209815 140209927 -3576528 + Charlie8 DNA MER1_type 55 159 -2258 225 182 23 0 chr12 140211755 140211799 -3574656 + GA-rich Low_complexity Low_complexity 3 47 0 314 253 35 0 chr12 140212173 140212260 -3574195 - Charlie8 DNA MER1_type -2258 159 70 223 264 51 39 chr12 140213944 140214122 -3572333 + (CAGTG)n Simple_repeat Simple_repeat 1 180 0 235 303 40 17 chr12 140214133 140214308 -3572147 + (CGGTG)n Simple_repeat Simple_repeat 1 179 0 214 304 50 6 chr12 140214246 140214407 -3572048 + (CAGTG)n Simple_repeat Simple_repeat 1 168 0 * 228 298 50 6 chr12 140214434 140214595 -3571860 + (CAGTG)n Simple_repeat Simple_repeat 1 168 0 266 275 54 6 chr12 140214674 140214841 -3571614 + (CAGTG)n Simple_repeat Simple_repeat 1 175 0 254 298 47 6 chr12 140214891 140215062 -3571393 + (CGGTG)n Simple_repeat Simple_repeat 1 178 0 304 288 47 0 chr12 140215288 140215458 -3570997 + (CGGTG)n Simple_repeat Simple_repeat 1 178 0 242 308 45 0 chr12 140215652 140215808 -3570647 + (CAGTG)n Simple_repeat Simple_repeat 1 163 0 354 288 71 36 chr12 140216794 140217186 -3569269 - L2 LINE L2 -204 3068 2600 254 267 27 27 chr12 140217368 140217443 -3569012 - L2 LINE L2 -13 3300 3226 209 182 18 0 chr12 140217459 140217514 -3568941 + CT-rich Low_complexity Low_complexity 2 57 0 461 291 162 11 chr12 140217517 140217979 -3568476 - L2 LINE L2 -94 3219 2677 183 345 48 0 chr12 140218628 140218712 -3567743 + L2 LINE L2 3183 3270 -2 633 235 87 0 chr12 140222662 140222858 -3563597 + MLT1D LTR MaLR 35 247 -258 322 364 118 5 chr12 140222962 140223149 -3563306 + L1ME4a LINE L1 5267 5474 -704 814 311 77 17 chr12 140223445 140224227 -3562228 + L1ME LINE L1 4886 5715 -455 471 282 28 0 chr12 140224241 140224383 -3562072 + L1ME3A LINE L1 6020 6165 -5 305 300 22 11 chr12 140224556 140224646 -3561809 + L1ME4a LINE L1 5601 5691 -430 273 319 71 24 chr12 140224755 140224924 -3561531 + L1ME4a LINE L1 5864 6040 -81 234 91 0 0 chr12 140224929 140224962 -3561493 + (TG)n Simple_repeat Simple_repeat 2 34 0 233 271 94 0 chr12 140225207 140225292 -3561163 + L1ME LINE L1 5709 5801 -369 545 174 45 30 chr12 140225361 140225493 -3560962 + MER20B DNA MER1_type 31 164 -55 2028 125 27 0 chr12 140226315 140226612 -3559843 + AluSx SINE Alu 1 305 -7 1504 221 19 0 chr12 140227375 140227697 -3558758 - MER7A DNA MER2_type 0 346 21 2939 274 97 58 chr12 140228377 140229958 -3556497 + L1MC4a LINE L1 5686 7328 -480 1770 160 9 27 chr12 140229975 140230144 -3556311 + MLT1B LTR MaLR 7 169 -221 1735 168 14 0 chr12 140230144 140230436 -3556019 + AluJb SINE Alu 1 296 -16 1770 160 9 27 chr12 140230436 140230604 -3555851 + MLT1B LTR MaLR 169 338 -52 960 281 74 50 chr12 140230634 140231093 -3555362 + L1MD3 LINE L1 7518 7987 -8 316 329 55 0 chr12 140231100 140231264 -3555191 + Charlie8 DNA MER1_type 3 175 -2242 460 177 6 66 chr12 140234057 140234238 -3552217 + (TG)n Simple_repeat Simple_repeat 1 170 0 200 160 11 66 chr12 140234304 140234485 -3551970 + (TG)n Simple_repeat Simple_repeat 1 171 0 404 106 0 171 chr12 140234531 140234748 -3551707 + (TG)n Simple_repeat Simple_repeat 1 180 0 199 172 0 62 chr12 140234769 140234833 -3551622 + (TG)n Simple_repeat Simple_repeat 2 61 0 2213 92 3 0 chr12 140235102 140235397 -3551058 - AluSx SINE Alu -16 296 1 194 382 46 15 chr12 140236093 140236224 -3550231 - L2 LINE L2 -562 2752 2618 276 244 0 0 chr12 140236351 140236515 -3549940 + CT-rich Low_complexity Low_complexity 2 165 0 430 301 0 0 chr12 140236573 140236749 -3549706 + CT-rich Low_complexity Low_complexity 2 177 0 326 98 0 0 chr12 140237085 140237136 -3549319 + U5 snRNA snRNA 1 51 -65 357 310 0 18 chr12 140238157 140238288 -3548167 + MIR SINE MIR 21 143 -65 220 268 0 18 chr12 140238651 140238708 -3547747 + T-rich Low_complexity Low_complexity 1 55 0 210 119 30 30 chr12 140238837 140238904 -3547551 + T-rich Low_complexity Low_complexity 5 71 0 231 297 13 26 chr12 140238959 140239114 -3547341 + T-rich Low_complexity Low_complexity 2 154 0 1006 266 60 28 chr12 140239280 140239961 -3546494 - L1M4 LINE L1 -2001 4145 2774 231 114 0 0 chr12 140239961 140239996 -3546459 + (A)n Simple_repeat Simple_repeat 1 35 0 1913 121 14 3 chr12 140239997 140240286 -3546169 + AluSg SINE Alu 1 292 -18 799 100 0 15 chr12 140240286 140240416 -3546039 + (TA)n Simple_repeat Simple_repeat 2 129 0 231 269 15 0 chr12 140240441 140240508 -3545947 + C-rich Low_complexity Low_complexity 3 70 0 267 252 0 0 chr12 140240528 140240639 -3545816 + C-rich Low_complexity Low_complexity 1 111 0 420 353 0 0 chr12 140240657 140240793 -3545662 + C-rich Low_complexity Low_complexity 1 136 0 204 40 0 0 chr12 140240816 140240841 -3545614 + (C)n Simple_repeat Simple_repeat 1 25 0 206 346 0 0 chr12 140240878 140240959 -3545496 + C-rich Low_complexity Low_complexity 3 83 0 977 141 34 0 chr12 140241119 140241268 -3545187 - AluJb SINE Alu -24 288 135 4180 52 12 0 chr12 140241268 140241840 -3544615 - MER11B LTR ERVK -656 580 2 798 219 0 7 chr12 140241892 140242038 -3544417 + FRAM SINE Alu 1 169 0 217 0 0 0 chr12 140242038 140242062 -3544393 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1200 101 6 0 chr12 140242293 140242453 -3544002 - AluSq SINE Alu -15 298 140 1214 262 58 35 chr12 140242678 140243160 -3543295 + MER77 LTR ERV1 132 599 -6 23 0 0 0 chr12 140243727 140243750 -3542705 + GC_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr12 140243891 140243921 -3542534 + GC_rich Low_complexity Low_complexity 1 30 0 880 155 18 18 chr12 140244917 140245085 -3541370 + MER105 DNA DNA 34 201 -3 1500 159 0 87 chr12 140245306 140245441 -3541014 + AluJo SINE Alu 9 154 -158 1960 144 34 0 chr12 140245441 140245733 -3540722 + AluSx SINE Alu 1 302 -10 1500 159 0 87 chr12 140245733 140245918 -3540537 + AluJo SINE Alu 154 301 -11 192 304 89 13 chr12 140246111 140246190 -3540265 - MIR3 SINE MIR -14 194 110 259 316 52 63 chr12 140246207 140246381 -3540074 + MIR SINE MIR 70 241 -21 1924 162 0 23 chr12 140246451 140246760 -3539695 + AluJb SINE Alu 1 302 -10 1881 166 3 0 chr12 140247723 140248018 -3538437 - AluJo SINE Alu -16 296 1 1793 105 109 0 chr12 140248647 140248913 -3537542 - AluSx SINE Alu -9 303 9 264 111 127 16 chr12 140249236 140249299 -3537156 - MLT1K LTR MaLR -8 580 511 1946 170 0 0 chr12 140249312 140249612 -3536843 + AluSx SINE Alu 1 300 -12 294 283 185 42 chr12 140249882 140250282 -3536173 - L2 LINE L2 -21 3292 2836 1665 174 21 3 chr12 140252888 140253175 -3533280 + AluJo SINE Alu 1 292 -20 1925 131 13 24 chr12 140253279 140253577 -3532878 + AluSx SINE Alu 1 295 -17 1672 158 84 3 chr12 140254256 140254540 -3531915 + AluJb SINE Alu 1 307 -5 253 233 31 62 chr12 140255955 140256084 -3530371 + G-rich Low_complexity Low_complexity 2 126 0 350 257 7 34 chr12 140256100 140256248 -3530207 + C-rich Low_complexity Low_complexity 4 147 0 208 170 0 38 chr12 140256376 140256429 -3530026 + (CGGGG)n Simple_repeat Simple_repeat 4 54 0 940 85 0 0 chr12 140257004 140257122 -3529333 - FLAM_A SINE Alu -14 128 11 350 181 149 32 chr12 140257127 140257221 -3529234 - AluSq/x SINE Alu -164 139 35 776 170 7 15 chr12 140257928 140258063 -3528392 + FRAM SINE Alu 19 152 -24 1252 95 24 0 chr12 140258327 140258496 -3527959 - AluSg/x SINE Alu -4 308 136 1946 128 0 0 chr12 140258501 140258767 -3527688 - AluSx SINE Alu -17 295 30 1472 181 8 15 chr12 140258797 140259063 -3527392 + AluJo SINE Alu 3 266 -46 23 54 0 0 chr12 140261671 140261708 -3524747 + AT_rich Low_complexity Low_complexity 1 37 0 2337 78 0 20 chr12 140261852 140262148 -3524307 + AluSg SINE Alu 7 296 -14 21 0 0 0 chr12 140262207 140262228 -3524227 + AT_rich Low_complexity Low_complexity 1 21 0 1918 84 0 0 chr12 140262728 140262965 -3523490 - AluSc SINE Alu -72 237 1 1733 199 0 7 chr12 140263071 140263372 -3523083 - AluJo SINE Alu -13 299 1 1082 148 10 49 chr12 140265114 140265317 -3521138 - AluJb SINE Alu -23 289 95 21 57 0 0 chr12 140265769 140265804 -3520651 + AT_rich Low_complexity Low_complexity 1 35 0 1712 132 60 39 chr12 140266069 140266350 -3520105 + AluJo SINE Alu 1 287 -25 1928 136 26 7 chr12 140266817 140267119 -3519336 + AluSx SINE Alu 1 308 -4 795 180 27 54 chr12 140267377 140267516 -3518939 + MLT1H1 LTR MaLR 340 472 -83 2730 110 67 22 chr12 140267516 140267784 -3518671 - MER4C LTR ERV1 0 465 168 1916 169 0 3 chr12 140267784 140268085 -3518370 - AluSx SINE Alu -6 306 7 2730 110 67 22 chr12 140268085 140268261 -3518194 - MER4C LTR ERV1 -297 168 1 795 180 27 54 chr12 140268261 140268343 -3518112 + MLT1H1 LTR MaLR 472 555 0 364 259 7 86 chr12 140268363 140268397 -3518058 - L2 LINE L2 -1 3312 3277 4236 98 13 18 chr12 140268397 140269010 -3517445 + MER4B LTR ERV1 1 610 0 364 259 7 86 chr12 140269010 140269114 -3517341 - L2 LINE L2 -36 3277 3185 429 271 0 0 chr12 140269128 140269305 -3517150 + (TG)n Simple_repeat Simple_repeat 2 178 0 190 285 63 76 chr12 140269305 140269331 -3517124 - L2 LINE L2 -133 3180 3155 1454 167 28 45 chr12 140269331 140269457 -3516998 + AluJo SINE Alu 1 128 -184 2640 42 3 0 chr12 140269457 140269763 -3516692 + AluY SINE Alu 1 307 -4 1454 167 28 45 chr12 140269763 140269923 -3516532 + AluJo SINE Alu 128 282 -30 288 0 85 0 chr12 140269928 140269975 -3516480 + A-rich Low_complexity Low_complexity 2 52 0 190 285 63 76 chr12 140269975 140270100 -3516355 - L2 LINE L2 -162 3151 3025 2497 28 0 0 chr12 140270557 140270878 -3515577 + AluY SINE Alu 1 321 0 1076 232 48 31 chr12 140271136 140271489 -3514966 - MER21B LTR ERV1 -105 758 400 360 0 0 0 chr12 140271574 140271614 -3514841 + (TG)n Simple_repeat Simple_repeat 1 40 0 1303 137 11 0 chr12 140271614 140271804 -3514651 - AluJo SINE Alu -33 279 88 778 232 95 17 chr12 140271852 140272093 -3514362 - MER21B LTR ERV1 -506 357 98 238 281 31 0 chr12 140272145 140272209 -3514246 - MER21B LTR ERV1 -776 87 22 340 181 26 138 chr12 140272349 140272424 -3514031 + L2 LINE L2 3211 3293 -20 312 67 50 0 chr12 140272424 140272484 -3513971 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1860 141 14 7 chr12 140272486 140272763 -3513692 - AluSx SINE Alu -32 280 2 340 181 26 138 chr12 140272763 140272800 -3513655 + L2 LINE L2 3294 3313 0 656 244 96 88 chr12 140273004 140273337 -3513118 - LTR8A LTR ERV1 -14 713 384 2466 97 0 3 chr12 140273337 140273647 -3512808 - AluSx SINE Alu -3 309 1 2056 148 10 3 chr12 140273653 140273963 -3512492 - AluJo SINE Alu 0 312 1 656 244 96 88 chr12 140273963 140274040 -3512415 - LTR8A LTR ERV1 -347 380 293 448 262 160 37 chr12 140274249 140274436 -3512019 + MIR SINE MIR 43 252 -10 1432 218 74 30 chr12 140274499 140274862 -3511593 - L1MB5 LINE L1 -13 6161 5783 202 219 52 21 chr12 140274998 140275094 -3511361 + (CAT)n Simple_repeat Simple_repeat 1 99 0 * 425 216 45 23 chr12 140275071 140275247 -3511208 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 375 200 53 35 chr12 140275378 140275548 -3510907 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 244 239 51 34 chr12 140275582 140275758 -3510697 + (CAT)n Simple_repeat Simple_repeat 1 179 0 234 159 51 85 chr12 140275849 140276025 -3510430 + (CACAT)n Simple_repeat Simple_repeat 3 172 0 * 397 192 42 36 chr12 140275910 140276132 -3510323 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 335 212 33 54 chr12 140276225 140276409 -3510046 + (CAT)n Simple_repeat Simple_repeat 1 180 0 226 213 27 75 chr12 140276473 140276661 -3509794 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2198 191 76 42 chr12 140276667 140277258 -3509197 - MER21A LTR ERV1 -44 887 277 2284 77 3 7 chr12 140277266 140277552 -3508903 - AluY SINE Alu -26 285 1 431 210 49 77 chr12 140277669 140277812 -3508643 - LTR8 LTR ERV1 -551 140 2 699 171 8 8 chr12 140277920 140278043 -3508412 + AluJb SINE Alu 2 124 -188 22 0 0 0 chr12 140278052 140278074 -3508381 + AT_rich Low_complexity Low_complexity 1 22 0 2794 148 39 26 chr12 140278376 140278916 -3507539 + LTR10A LTR ERV1 1 547 -62 2341 99 0 0 chr12 140278967 140279261 -3507194 + AluSg SINE Alu 1 294 -16 1168 255 93 30 chr12 140279330 140279805 -3506650 - MLT1D LTR MaLR 0 505 1 636 81 23 0 chr12 140279923 140280010 -3506445 - AluJ/FLAM SINE Alu -221 91 3 24 53 0 0 chr12 140280032 140280070 -3506385 + AT_rich Low_complexity Low_complexity 1 38 0 688 193 15 30 chr12 140280137 140280272 -3506183 + FLAM_A SINE Alu 1 133 0 2291 106 0 10 chr12 140280273 140280576 -3505879 + AluSx SINE Alu 1 300 -12 314 265 42 49 chr12 140280577 140280767 -3505688 + L1ME LINE L1 5606 5796 -325 218 241 17 0 chr12 140280955 140281013 -3505442 + (TA)n Simple_repeat Simple_repeat 2 60 0 2167 139 0 0 chr12 140281013 140281316 -3505139 - AluSx SINE Alu -9 303 1 1695 127 41 8 chr12 140281328 140281595 -3504860 - AluSx SINE Alu -5 307 32 2063 139 0 3 chr12 140283073 140283374 -3503081 - AluJb SINE Alu -6 306 7 321 153 0 0 chr12 140283474 140283546 -3502909 + (TG)n Simple_repeat Simple_repeat 2 73 0 747 155 0 0 chr12 140283574 140283748 -3502707 + (TG)n Simple_repeat Simple_repeat 2 175 0 826 113 0 40 chr12 140283889 140284013 -3502442 + FLAM_C SINE Alu 1 119 -24 30 0 0 0 chr12 140284024 140284054 -3502401 + AT_rich Low_complexity Low_complexity 1 30 0 831 146 42 21 chr12 140284330 140284474 -3501981 - FRAM SINE Alu -27 149 3 1564 239 24 40 chr12 140285408 140285731 -3500724 - MLT1C LTR MaLR -5 462 147 1905 152 0 0 chr12 140285731 140286031 -3500424 + AluJb SINE Alu 6 305 0 1564 239 24 40 chr12 140286031 140286175 -3500280 - MLT1C LTR MaLR -320 147 2 519 309 92 38 chr12 140286351 140286510 -3499945 - L1M4 LINE L1 -913 5233 5052 2123 92 11 3 chr12 140286510 140286813 -3499642 - AluSp SINE Alu 0 305 1 519 309 92 38 chr12 140286813 140286914 -3499541 - L1M4 LINE L1 -1094 5052 4958 1000 167 5 68 chr12 140286925 140287117 -3499338 - AluJb SINE Alu 0 312 133 432 227 117 18 chr12 140287663 140287826 -3498629 + L1MC5 LINE L1 7498 7676 -285 1360 138 36 13 chr12 140287887 140288112 -3498343 + AluJo SINE Alu 83 312 0 2797 35 0 0 chr12 140288309 140288619 -3497836 + AluY SINE Alu 1 310 -1 632 333 38 42 chr12 140288623 140288839 -3497616 - L1MC5 LINE L1 -852 7109 6894 2237 126 0 16 chr12 140288839 140289156 -3497299 - AluSx SINE Alu 0 312 1 632 333 38 42 chr12 140289156 140289438 -3497017 - L1MC5 LINE L1 -1067 6894 6613 627 259 94 28 chr12 140289466 140289591 -3496864 - L1MC5 LINE L1 -1977 5831 5716 2075 124 61 25 chr12 140289591 140289953 -3496502 + THE1C LTR MaLR 1 375 0 627 259 94 28 chr12 140289953 140290113 -3496342 - L1MC5 LINE L1 -2092 5716 5527 712 220 0 0 chr12 140290166 140290298 -3496157 + FLAM_C SINE Alu 1 132 -1 181 238 24 0 chr12 140290509 140290551 -3495904 - L2 LINE L2 -75 3238 3196 225 196 0 0 chr12 140290551 140290597 -3495858 + (TG)n Simple_repeat Simple_repeat 2 47 0 1649 119 0 0 chr12 140290663 140290882 -3495573 + AluJb SINE Alu 86 304 -8 2026 153 0 0 chr12 140291669 140291976 -3494479 - AluJb SINE Alu -5 307 1 507 143 13 0 chr12 140292455 140292532 -3493923 - AluSq/x SINE Alu -203 110 33 1694 123 11 4 chr12 140292532 140292809 -3493646 - L1MC/D LINE L1 -599 5734 5456 2526 169 114 2 chr12 140292898 140293444 -3493011 + L1MC1 LINE L1 5725 6331 -2 261 211 39 61 chr12 140294227 140294407 -3492048 + (ATGGTG)n Simple_repeat Simple_repeat 3 178 0 546 308 40 49 chr12 140294756 140294851 -3491604 - HAL1b LINE L1 -1045 303 209 2180 105 3 17 chr12 140294851 140295147 -3491308 - AluSx SINE Alu -20 292 1 546 308 40 49 chr12 140295147 140295298 -3491157 - HAL1b LINE L1 -1139 209 59 402 276 98 19 chr12 140295300 140295565 -3490890 - L1ME1 LINE L1 -5 6161 5876 1039 167 18 55 chr12 140295567 140295842 -3490613 - AluSx SINE Alu -1 311 47 315 130 19 0 chr12 140295999 140296053 -3490402 + AluSq SINE Alu 132 186 -117 894 128 40 27 chr12 140296055 140296203 -3490252 - AluSq/x SINE Alu -163 150 1 248 53 26 0 chr12 140296462 140296500 -3489955 + (TG)n Simple_repeat Simple_repeat 1 39 0 1748 199 44 76 chr12 140296518 140297082 -3489373 - MLT2B3 LTR ERVL -8 546 1 1264 281 89 27 chr12 140297318 140297945 -3488510 - L1MC4a LINE L1 -1886 5922 5257 2172 105 34 0 chr12 140298004 140298300 -3488155 - AluSx SINE Alu -6 306 1 374 232 37 116 chr12 140298457 140298621 -3487834 - L1MC4 LINE L1 -1278 6764 6614 309 287 23 11 chr12 140298543 140298630 -3487825 + L1MC4 LINE L1 6615 6702 -1340 * 367 262 73 91 chr12 140298764 140298812 -3487643 - L1MC4a LINE L1 -1564 4582 4535 1776 184 7 85 chr12 140298812 140299235 -3487220 + MLT1B LTR MaLR 1 390 0 367 262 73 91 chr12 140299235 140299461 -3486994 - L1MC4a LINE L1 -1611 4535 4313 186 43 0 0 chr12 140299653 140299676 -3486779 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2116 113 35 0 chr12 140299676 140299960 -3486495 - AluSq SINE Alu -19 294 1 517 62 37 0 chr12 140299960 140300041 -3486414 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 435 287 208 25 chr12 140300062 140300341 -3486114 - L1ME1 LINE L1 -297 5824 5495 250 252 21 63 chr12 140300344 140300487 -3485968 - L1ME1 LINE L1 -682 5488 5352 947 118 0 22 chr12 140300519 140300655 -3485800 + FLAM_C SINE Alu 1 133 0 1001 276 142 33 chr12 140300901 140301075 -3485380 - L2 LINE L2 0 3313 3159 1588 191 15 7 chr12 140301075 140301348 -3485107 + AluSx SINE Alu 16 290 -22 2293 78 3 0 chr12 140301354 140301671 -3484784 + AluSx SINE Alu 1 318 0 1001 276 142 33 chr12 140301671 140301945 -3484510 - L2 LINE L2 -158 3155 2807 1004 177 11 5 chr12 140301996 140302182 -3484273 + MLT1A1 LTR MaLR 1 187 -178 241 175 0 0 chr12 140302179 140302219 -3484236 + Alu SINE Alu 75 114 -188 * 2325 107 0 3 chr12 140302249 140302548 -3483907 + AluSc SINE Alu 1 298 -11 983 183 0 0 chr12 140302826 140302995 -3483460 + MLT1A1 LTR MaLR 197 365 0 2203 117 10 0 chr12 140303025 140303323 -3483132 - AluSq SINE Alu -12 301 1 1280 236 39 61 chr12 140303641 140304098 -3482357 - MLT1C LTR MaLR -3 464 18 295 241 14 106 chr12 140304240 140304381 -3482074 + MER4A LTR ERV1 60 187 -477 407 185 22 104 chr12 140304411 140304546 -3481909 + MER4A LTR ERV1 188 311 -353 760 168 110 6 chr12 140304721 140304894 -3481561 + MER4C LTR ERV1 275 465 0 1861 161 0 3 chr12 140305278 140305570 -3480885 - AluJb SINE Alu -21 291 1 302 290 65 19 chr12 140305570 140305667 -3480788 + L1MC3 LINE L1 6542 6646 -1139 * 323 311 0 38 chr12 140305578 140305684 -3480771 - L1MC4 LINE L1 -1334 6708 6607 24 0 0 0 chr12 140305844 140305868 -3480587 + AT_rich Low_complexity Low_complexity 1 24 0 2359 107 0 0 chr12 140305938 140306247 -3480208 + AluSq SINE Alu 1 309 -4 759 188 101 0 chr12 140306282 140306420 -3480035 + FAM SINE Alu 1 152 -33 180 0 0 0 chr12 140306426 140306446 -3480009 + (CAA)n Simple_repeat Simple_repeat 2 21 0 335 234 76 98 chr12 140306448 140306632 -3479823 + L1MC4a LINE L1 6310 6489 -1319 594 278 23 49 chr12 140306789 140307095 -3479360 + L1MC5 LINE L1 6636 6933 -1028 912 247 149 50 chr12 140307219 140307414 -3479041 - L1M4 LINE L1 -778 5368 5194 2182 132 3 0 chr12 140307414 140307724 -3478731 - AluSx SINE Alu -1 311 1 912 247 149 50 chr12 140307724 140308090 -3478365 - L1M4 LINE L1 -952 5194 4751 254 137 20 20 chr12 140308090 140308163 -3478292 - Alu SINE Alu 0 302 242 * 333 122 27 40 chr12 140308147 140308221 -3478234 + AluSg/x SINE Alu 209 281 -19 357 316 111 21 chr12 140308253 140308443 -3478012 - MIR SINE MIR -31 231 25 1024 162 0 0 chr12 140309166 140309320 -3477135 - FRAM SINE Alu -10 166 13 2028 117 6 38 chr12 140309407 140309724 -3476731 + AluSx SINE Alu 1 307 -5 327 67 0 0 chr12 140309783 140309828 -3476627 + Alu SINE Alu 242 286 -16 23 0 0 0 chr12 140309828 140309851 -3476604 + AT_rich Low_complexity Low_complexity 1 23 0 913 141 0 0 chr12 140309851 140309972 -3476483 + AluJo/FLAM SINE Alu 1 121 -191 2380 76 0 17 chr12 140309972 140310273 -3476182 - AluY SINE Alu -15 296 1 2316 113 0 16 chr12 140310324 140310634 -3475821 - AluSx SINE Alu -7 305 1 207 97 32 48 chr12 140310655 140310717 -3475738 + A-rich Low_complexity Low_complexity 2 62 0 1203 262 127 32 chr12 140310839 140311130 -3475325 + MLT1F1 LTR MaLR 4 357 -210 1944 147 0 23 chr12 140311130 140311436 -3475019 + AluJo SINE Alu 1 299 -13 1203 262 127 32 chr12 140311436 140311610 -3474845 + MLT1F1 LTR MaLR 357 513 -54 1132 144 75 20 chr12 140311785 140311986 -3474469 - AluJo SINE Alu -20 292 81 1771 180 87 69 chr12 140312029 140312355 -3474100 - L1MC4 LINE L1 -124 7918 7599 2180 102 3 23 chr12 140312355 140312658 -3473797 - AluSc SINE Alu -12 297 1 2173 118 0 0 chr12 140312663 140312950 -3473505 - AluSx SINE Alu -17 295 9 1771 180 87 69 chr12 140312950 140313122 -3473333 - L1MC4 LINE L1 -446 7596 7405 1585 206 3 3 chr12 140313124 140313410 -3473045 - AluJo SINE Alu -18 294 9 584 294 104 26 chr12 140313417 140313446 -3473009 + L2 LINE L2 2686 2711 -603 2484 65 7 0 chr12 140313446 140313739 -3472716 + AluY SINE Alu 1 295 -16 584 294 104 26 chr12 140313739 140313978 -3472477 + L2 LINE L2 2711 2975 -339 1967 134 7 0 chr12 140313980 140314256 -3472199 + AluSx SINE Alu 1 278 -34 283 275 125 62 chr12 140314398 140314558 -3471897 + MER5B DNA MER1_type 9 178 0 813 276 74 35 chr12 140315120 140315314 -3471141 - L1M4 LINE L1 -1579 4567 4382 2315 116 0 3 chr12 140315314 140315625 -3470830 - AluSg SINE Alu 0 310 1 813 276 74 35 chr12 140315625 140315919 -3470536 - L1M4 LINE L1 -1764 4382 4060 395 263 53 0 chr12 140316190 140316304 -3470151 - MER103 DNA DNA -45 121 2 901 81 24 0 chr12 140317531 140317655 -3468800 + AluSg/x SINE Alu 150 276 -36 275 0 0 28 chr12 140317659 140317695 -3468760 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr12 140319471 140319494 -3466961 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 546 214 0 0 chr12 140319502 140319600 -3466855 - AluJb SINE Alu -81 231 134 1217 174 39 5 chr12 140319600 140319807 -3466648 - AluJb SINE Alu -98 214 1 434 196 10 0 chr12 140320289 140320391 -3466064 + CT-rich Low_complexity Low_complexity 4 106 0 2104 132 3 22 chr12 140320400 140320718 -3465737 - AluSx SINE Alu 0 312 1 1867 128 66 0 chr12 140320720 140320994 -3465461 - AluY SINE Alu -19 292 1 1959 155 3 0 chr12 140320997 140321288 -3465167 - AluJo SINE Alu -14 298 7 1788 161 3 3 chr12 140321481 140321779 -3464676 + AluJb SINE Alu 7 304 -8 1217 117 5 10 chr12 140322005 140322202 -3464253 + L1PA12 LINE L1 5807 6002 -166 317 333 31 0 chr12 140322999 140323128 -3463327 + MIR SINE MIR 48 180 -82 821 204 0 48 chr12 140323174 140323318 -3463137 - AluJb SINE Alu -44 268 133 333 0 0 0 chr12 140323318 140323355 -3463100 + (TA)n Simple_repeat Simple_repeat 2 38 0 821 204 0 48 chr12 140323355 140323396 -3463059 - AluJb SINE Alu -179 133 92 314 286 0 68 chr12 140323672 140323805 -3462650 - L1MEd LINE L1 -4735 1575 1452 877 319 97 59 chr12 140323833 140324587 -3461868 - L1MEd LINE L1 -4864 1255 562 209 204 0 0 chr12 140324819 140324868 -3461587 + T-rich Low_complexity Low_complexity 1 49 0 1247 235 129 41 chr12 140325560 140326096 -3460359 - MER20B DNA MER1_type -26 757 175 442 178 56 0 chr12 140326094 140326184 -3460271 - U13 snRNA snRNA -9 95 1 * 340 273 162 7 chr12 140326180 140326337 -3460118 - MER20B DNA MER1_type -43 176 5 * 733 183 8 23 chr12 140326449 140326580 -3459875 - FLAM_A SINE Alu 0 133 5 2462 91 0 3 chr12 140326602 140326909 -3459546 + AluSg SINE Alu 1 306 -4 673 181 113 45 chr12 140328187 140328364 -3458091 - MER5A DNA MER1_type 0 189 1 32 26 0 0 chr12 140328474 140328513 -3457942 + AT_rich Low_complexity Low_complexity 1 39 0 436 282 152 47 chr12 140329180 140329588 -3456867 - L1MC5 LINE L1 -175 7786 7336 500 198 17 3 chr12 140329739 140329957 -3456498 - MER21A LTR ERV1 -283 424 13 292 169 0 143 chr12 140329962 140330039 -3456416 - L1MB5 LINE L1 -13 6161 6096 254 309 120 34 chr12 140330272 140330505 -3455950 + L2 LINE L2 2828 3080 -233 305 278 66 7 chr12 140331890 140332041 -3454414 - LTR33 LTR ERVL -56 465 306 731 243 9 10 chr12 140332844 140333171 -3453284 + MLT2C1 LTR ERVL 1 358 -39 225 241 86 12 chr12 140333188 140333350 -3453105 + (TCCA)n Simple_repeat Simple_repeat 4 177 0 232 406 0 0 chr12 140333373 140333528 -3452927 + C-rich Low_complexity Low_complexity 4 158 0 * 314 384 0 0 chr12 140333498 140333675 -3452780 + (CA)n Simple_repeat Simple_repeat 2 178 0 * 393 351 0 8 chr12 140333598 140334027 -3452428 + C-rich Low_complexity Low_complexity 1 425 0 321 364 6 0 chr12 140334090 140334266 -3452189 + (CA)n Simple_repeat Simple_repeat 2 178 0 * 454 311 0 11 chr12 140334182 140334362 -3452093 + C-rich Low_complexity Low_complexity 1 178 0 313 331 49 18 chr12 140334560 140334723 -3451732 - L1MC4 LINE L1 -1350 6692 6525 989 98 33 0 chr12 140335226 140335379 -3451076 - MSTB LTR MaLR -268 158 1 2399 104 0 0 chr12 140335922 140336230 -3450225 + AluSc SINE Alu 1 308 -1 189 159 0 0 chr12 140336235 140336279 -3450176 + A-rich Low_complexity Low_complexity 4 47 0 2327 82 0 47 chr12 140336834 140337153 -3449302 - AluY SINE Alu -7 304 1 322 268 0 0 chr12 140337432 140337514 -3448941 + MIR SINE MIR 10 91 -171 288 216 124 10 chr12 140337547 140337644 -3448811 + MER96 DNA MER1_type? 68 175 0 407 344 32 13 chr12 140337646 140337800 -3448655 + MIR SINE MIR 85 241 -21 288 285 131 9 chr12 140337907 140338121 -3448334 + LTR50 LTR ERVL 1 240 -555 264 326 4 34 chr12 140338132 140338557 -3447898 + CT-rich Low_complexity Low_complexity 1 412 0 1470 311 50 9 chr12 140338691 140339328 -3447127 + L1ME1 LINE L1 5499 6161 -5 557 165 41 8 chr12 140339353 140339474 -3446981 + L1MA4 LINE L1 6176 6300 0 1660 102 0 4 chr12 140339480 140339705 -3446750 + AluSg/x SINE Alu 88 311 -1 2343 87 0 0 chr12 140340423 140340746 -3445709 + AluSx SINE Alu 1 323 0 182 257 87 60 chr12 140340960 140341143 -3445312 - L2 LINE L2 -903 2411 2224 243 91 45 23 chr12 140341800 140341844 -3444611 + MER4A LTR ERV1 54 98 -566 1718 142 8 46 chr12 140341844 140342203 -3444252 + MER4A LTR ERV1 261 664 0 237 261 15 0 chr12 140342242 140342307 -3444148 - MIR SINE MIR -30 232 167 2125 111 0 43 chr12 140342308 140342454 -3444001 + MER4B LTR ERV1 2 153 -457 2019 109 39 3 chr12 140342454 140342737 -3443718 - AluSx SINE Alu -19 293 1 2125 111 0 43 chr12 140342737 140342941 -3443514 + MER4B LTR ERV1 153 337 -273 1612 135 156 79 chr12 140342941 140343320 -3443135 - MER4A LTR ERV1 0 664 257 491 133 89 0 chr12 140343316 140343406 -3443049 - MER4A LTR ERV1 -566 98 1 * 1491 164 21 21 chr12 140343406 140343686 -3442769 + MER4E LTR ERV1 487 766 0 495 203 4 48 chr12 140343686 140343827 -3442628 - MIR SINE MIR -65 143 35 285 361 76 9 chr12 140343859 140344124 -3442331 + L1ME LINE L1 5435 5711 -410 1860 101 58 0 chr12 140345283 140345559 -3440896 - AluSc SINE Alu -17 292 1 514 266 89 30 chr12 140345637 140345806 -3440649 - MIR SINE MIR -7 255 77 753 272 53 43 chr12 140345842 140346143 -3440312 - MLT1I LTR MaLR -6 403 100 1551 171 124 3 chr12 140346234 140346532 -3439923 + MER1B DNA MER1_type 4 337 0 283 341 96 12 chr12 140346571 140346738 -3439717 - MIR SINE MIR -62 200 20 31 108 0 0 chr12 140346809 140346938 -3439517 + AT_rich Low_complexity Low_complexity 1 129 0 304 236 9 73 chr12 140346969 140347079 -3439376 + L1MCa LINE L1 1971 2073 -4353 * 356 211 42 123 chr12 140347017 140347189 -3439266 - L1MC4 LINE L1 -1339 6983 1925 274 239 0 14 chr12 140348603 140348674 -3437781 - MER4A LTR ERV1 -592 72 3 337 323 116 26 chr12 140349023 140349212 -3437243 + MIR SINE MIR 14 219 -43 1105 275 127 17 chr12 140349776 140350242 -3436213 + LTR40a LTR ERVL 2 518 -1 1033 279 180 19 chr12 140350282 140350853 -3435602 - L1MC4 LINE L1 -5163 1444 782 496 264 55 0 chr12 140351344 140351507 -3434948 - L1MC4 LINE L1 -6180 427 256 732 162 121 12 chr12 140351977 140352150 -3434305 - LTR47A LTR ERVL 0 452 261 1347 248 21 15 chr12 140352581 140352912 -3433543 - MER46C DNA MER2_type -1 337 5 1290 171 14 5 chr12 140353017 140353239 -3433216 - AluJo SINE Alu -3 309 86 785 198 0 0 chr12 140353359 140353485 -3432970 - FLAM_C SINE Alu -10 133 8 1412 266 81 16 chr12 140353594 140353908 -3432547 - L1MB8 LINE L1 -2 6176 5884 1402 191 10 40 chr12 140353908 140354212 -3432243 + AluJo SINE Alu 1 295 -17 1949 146 0 0 chr12 140354213 140354521 -3431934 + AluSx SINE Alu 1 308 -4 1412 266 81 16 chr12 140354521 140354676 -3431779 - L1MB8 LINE L1 -293 5885 5674 351 307 17 104 chr12 140355678 140355909 -3430546 + L1ME4a LINE L1 5697 5907 -214 744 149 0 9 chr12 140356271 140356385 -3430070 + FRAM SINE Alu 32 144 -32 193 333 32 0 chr12 140356863 140356926 -3429529 + MER5B DNA MER1_type 78 142 -36 2247 76 40 3 chr12 140356926 140357227 -3429228 + AluSx SINE Alu 1 312 0 383 258 62 8 chr12 140358319 140358447 -3428008 + MLT1K LTR MaLR 151 285 -303 2175 92 20 0 chr12 140358592 140358898 -3427557 + AluSx SINE Alu 1 312 0 344 329 39 13 chr12 140360176 140360331 -3426124 - MIR SINE MIR -19 243 85 227 226 19 0 chr12 140361926 140361979 -3424476 + CT-rich Low_complexity Low_complexity 3 56 0 778 212 124 0 chr12 140362222 140362415 -3424040 + MER20 DNA MER1_type 3 219 0 881 289 40 18 chr12 140362482 140362980 -3423475 + MLT1K LTR MaLR 24 566 -22 252 296 45 11 chr12 140363199 140363287 -3423168 + MER103 DNA DNA 76 166 0 196 256 152 43 chr12 140364253 140364417 -3422038 + MIR SINE MIR 13 194 -68 577 302 136 11 chr12 140364814 140365175 -3421280 + MLT1I LTR MaLR 1 406 -3 500 298 72 22 chr12 140365913 140366094 -3420361 - Charlie8 DNA MER1_type -2195 222 33 186 103 0 0 chr12 140366252 140366281 -3420174 + (TG)n Simple_repeat Simple_repeat 1 29 0 7613 229 50 30 chr12 140366933 140368879 -3417576 + L1M4b LINE L1 11 1917 -5040 1791 166 17 0 chr12 140368879 140369180 -3417275 + AluJb SINE Alu 1 306 -6 7613 229 50 30 chr12 140369180 140371094 -3415361 + L1M4b LINE L1 1917 4047 -2910 401 275 41 12 chr12 140371234 140371405 -3415050 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 492 234 39 34 chr12 140371703 140371912 -3414543 + MLT1K LTR MaLR 139 285 -303 330 245 32 11 chr12 140373313 140373407 -3413048 + MER5A DNA MER1_type 14 109 -80 202 318 188 5 chr12 140374029 140374221 -3412234 + MIR SINE MIR 15 241 -21 264 329 177 24 chr12 140375828 140375992 -3410463 + MIR SINE MIR 31 219 -43 2270 88 16 3 chr12 140378639 140378989 -3407466 + AluSx SINE Alu 1 354 0 393 204 42 31 chr12 140379693 140380026 -3406429 + (CCAA)n Simple_repeat Simple_repeat 1 336 0 269 271 29 35 chr12 140380140 140380310 -3406145 + (CCAA)n Simple_repeat Simple_repeat 1 169 0 264 305 49 0 chr12 140381153 140381235 -3405220 + L2 LINE L2 3198 3283 -30 327 279 74 0 chr12 140381298 140381420 -3405035 - MIR SINE MIR -72 190 60 344 278 49 21 chr12 140383111 140383255 -3403200 - LTR33A LTR ERVL 0 523 376 867 177 6 23 chr12 140383908 140384083 -3402372 + AluJb SINE Alu 137 308 -4 488 106 0 86 chr12 140386131 140386393 -3400062 + (CTGGGG)n Simple_repeat Simple_repeat 1 239 0 197 256 90 13 chr12 140386459 140386537 -3399918 - MIR SINE MIR -59 149 66 554 325 88 27 chr12 140387137 140387574 -3398881 - Charlie8 DNA MER1_type -2133 284 5 394 308 79 0 chr12 140389412 140389608 -3396847 + L1ME1 LINE L1 5534 5658 -463 261 204 212 29 chr12 140391295 140391432 -3395023 + MER5A DNA MER1_type 9 170 -19 249 150 0 0 chr12 140393061 140393101 -3393354 + Alu SINE Alu 87 126 -176 1771 156 3 0 chr12 140393124 140393406 -3393049 + AluJo SINE Alu 6 288 -24 32 0 0 0 chr12 140393406 140393438 -3393017 + AT_rich Low_complexity Low_complexity 1 32 0 374 293 78 95 chr12 140394945 140395345 -3391110 + L2 LINE L2 2907 3299 -14 363 250 19 77 chr12 140396556 140396690 -3389765 + L1ME4a LINE L1 5933 6058 -63 1728 177 0 16 chr12 140396690 140397001 -3389454 - AluJo SINE Alu -2 310 5 363 250 19 77 chr12 140397001 140397022 -3389433 + L1ME4a LINE L1 6058 6079 -42 30 0 0 0 chr12 140398214 140398244 -3388211 + AT_rich Low_complexity Low_complexity 1 30 0 4590 261 47 20 chr12 140398413 140399405 -3387050 + L1MD1 LINE L1 1578 2542 -3673 2550 46 0 0 chr12 140399405 140399711 -3386744 + AluY SINE Alu 1 306 -5 4590 261 47 20 chr12 140399711 140401012 -3385443 + L1MD1 LINE L1 2542 3908 -2307 1500 254 19 32 chr12 140401010 140401475 -3384980 + L1ME1 LINE L1 5702 6160 -6 * 893 177 0 34 chr12 140402415 140402590 -3383865 + FRAM SINE Alu 1 167 -9 755 290 63 33 chr12 140403839 140404173 -3382282 + L2 LINE L2 2969 3312 -1 1988 183 7 62 chr12 140406315 140406731 -3379724 + MSTD LTR MaLR 1 393 -3 276 362 7 7 chr12 140408909 140409058 -3377397 + (CACCT)n Simple_repeat Simple_repeat 3 151 0 * 311 382 0 0 chr12 140408949 140409127 -3377328 + (CACTT)n Simple_repeat Simple_repeat 3 180 0 283 376 0 0 chr12 140409150 140409299 -3377156 + (CACTT)n Simple_repeat Simple_repeat 3 151 0 244 250 14 14 chr12 140410617 140410689 -3375766 + LTR67 LTR ERVL 464 535 -22 380 384 50 4 chr12 140410778 140411020 -3375435 - MIR SINE MIR -3 259 7 190 190 17 69 chr12 140412209 140412267 -3374188 - L3 LINE CR1 -939 638 584 387 288 74 9 chr12 140413005 140413220 -3373235 + L2 LINE L2 2226 2454 -860 262 286 68 12 chr12 140413332 140413493 -3372962 + L2 LINE L2 2702 2871 -443 196 333 41 0 chr12 140413689 140413812 -3372643 + L2 LINE L2 3140 3267 -5 3774 215 96 69 chr12 140415838 140417531 -3368924 + L1MD1 LINE L1 3883 5528 -783 1945 144 105 12 chr12 140417531 140417864 -3368591 - THE1B LTR MaLR 0 364 1 3774 215 96 69 chr12 140417864 140418028 -3368427 + L1MD1 LINE L1 5528 5686 -625 1758 101 115 4 chr12 140418028 140418306 -3368149 + AluSg1 SINE Alu 1 309 0 3774 215 96 69 chr12 140418306 140418801 -3367654 + L1MD1 LINE L1 5686 6311 0 414 222 239 17 chr12 140419958 140420134 -3366321 + L1MDa LINE L1 312 526 -6014 1458 218 57 3 chr12 140420178 140420563 -3365892 + L1MDa LINE L1 855 1260 -5280 1184 184 0 5 chr12 140420563 140420769 -3365686 - MER46A DNA MER2_type -31 205 1 2815 184 42 47 chr12 140420769 140420840 -3365615 + L1MDa LINE L1 1293 1363 -5177 1956 122 7 23 chr12 140420840 140421144 -3365311 + AluSx SINE Alu 1 299 -13 2815 184 42 47 chr12 140421144 140421874 -3364581 + L1MDa LINE L1 1363 2090 -4450 725 227 82 76 chr12 140422517 140422927 -3363528 + MLT1C LTR MaLR 1 383 -7 919 247 56 62 chr12 140424754 140425127 -3361328 - LTR37A LTR ERV1 0 426 56 498 289 51 40 chr12 140425327 140425580 -3360875 + L1MEc LINE L1 35 290 -6106 609 240 65 18 chr12 140425613 140425842 -3360613 + L1MEc LINE L1 378 617 -5779 621 248 68 75 chr12 140425885 140426192 -3360263 + L1ME1 LINE L1 5856 6160 -6 378 260 3 10 chr12 140426322 140426447 -3360008 + L1P1 LINE L1 5354 5470 -685 257 0 0 29 chr12 140428408 140428442 -3358013 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 2024 135 0 6 chr12 140428536 140428848 -3357607 + AluSx SINE Alu 3 312 0 2214 125 60 34 chr12 140429180 140429303 -3357152 + MSTA LTR MaLR 2 120 -308 1921 161 24 0 chr12 140429303 140429632 -3356823 + MER1B DNA MER1_type 1 337 0 2214 125 60 34 chr12 140429632 140429924 -3356531 + MSTA LTR MaLR 120 428 0 270 81 0 0 chr12 140430080 140430117 -3356338 + (ATG)n Simple_repeat Simple_repeat 2 38 0 208 369 57 0 chr12 140431109 140431231 -3355224 - MIR SINE MIR -117 145 17 276 240 183 19 chr12 140434577 140434681 -3351774 + MIR SINE MIR 20 140 -68 1111 236 107 70 chr12 140436267 140436754 -3349701 + LTR53 LTR ERVL 4 508 -11 191 121 0 0 chr12 140437858 140437891 -3348564 - L2 LINE L2 0 3272 3240 274 266 23 78 chr12 140438064 140438192 -3348263 + Charlie8 DNA MER1_type 39 159 -2258 225 182 23 0 chr12 140440023 140440067 -3346388 + GA-rich Low_complexity Low_complexity 3 47 0 332 253 35 0 chr12 140440441 140440528 -3345927 - Charlie8 DNA MER1_type -2269 148 59 223 264 51 39 chr12 140442212 140442390 -3344065 + (CAGTG)n Simple_repeat Simple_repeat 1 180 0 235 303 40 17 chr12 140442401 140442576 -3343879 + (CGGTG)n Simple_repeat Simple_repeat 1 179 0 214 304 50 6 chr12 140442514 140442675 -3343780 + (CAGTG)n Simple_repeat Simple_repeat 1 168 0 * 228 298 50 6 chr12 140442702 140442863 -3343592 + (CAGTG)n Simple_repeat Simple_repeat 1 168 0 266 275 54 6 chr12 140442942 140443109 -3343346 + (CAGTG)n Simple_repeat Simple_repeat 1 175 0 254 298 47 6 chr12 140443159 140443330 -3343125 + (CGGTG)n Simple_repeat Simple_repeat 1 178 0 304 288 47 0 chr12 140443556 140443726 -3342729 + (CGGTG)n Simple_repeat Simple_repeat 1 178 0 242 308 45 0 chr12 140443920 140444076 -3342379 + (CAGTG)n Simple_repeat Simple_repeat 1 163 0 328 296 69 33 chr12 140445062 140445454 -3341001 - L2 LINE L2 -204 3068 2600 327 244 23 23 chr12 140445628 140445714 -3340741 - L2 LINE L2 -2 3311 3226 209 182 18 0 chr12 140445730 140445785 -3340670 + CT-rich Low_complexity Low_complexity 2 57 0 448 313 190 9 chr12 140445788 140446376 -3340079 - L2 LINE L2 -94 3219 2514 183 345 48 0 chr12 140446895 140446979 -3339476 + L2 LINE L2 3183 3270 -2 633 235 87 0 chr12 140450834 140451030 -3335425 + MLT1D LTR MaLR 35 247 -258 318 348 86 23 chr12 140451084 140451321 -3335134 + L1ME4a LINE L1 5221 5474 -704 814 311 77 17 chr12 140451617 140452399 -3334056 + L1ME LINE L1 4886 5715 -455 471 282 28 0 chr12 140452413 140452555 -3333900 + L1ME3A LINE L1 6020 6165 -5 305 300 22 11 chr12 140452728 140452818 -3333637 + L1ME4a LINE L1 5601 5691 -430 273 319 71 24 chr12 140452927 140453096 -3333359 + L1ME4a LINE L1 5864 6040 -81 234 91 0 0 chr12 140453101 140453134 -3333321 + (TG)n Simple_repeat Simple_repeat 2 34 0 233 271 94 0 chr12 140453379 140453464 -3332991 + L1ME LINE L1 5709 5801 -369 545 174 45 30 chr12 140453533 140453665 -3332790 + MER20 DNA MER1_type 31 164 -55 2008 128 27 0 chr12 140454487 140454784 -3331671 + AluSx SINE Alu 1 305 -7 1496 224 19 0 chr12 140455547 140455869 -3330586 - MER7A DNA MER2_type 0 346 21 2934 274 99 58 chr12 140456553 140458132 -3328323 + L1MC4a LINE L1 5686 7328 -480 1752 163 9 27 chr12 140458149 140458318 -3328137 + MLT1B LTR MaLR 7 169 -221 1735 168 14 0 chr12 140458318 140458610 -3327845 + AluJb SINE Alu 1 296 -16 1752 163 9 27 chr12 140458610 140458778 -3327677 + MLT1B LTR MaLR 169 338 -52 966 278 74 52 chr12 140458808 140459268 -3327187 + L1MD3 LINE L1 7518 7987 -8 316 329 55 0 chr12 140459275 140459439 -3327016 + Charlie8 DNA MER1_type 3 175 -2242 460 177 6 66 chr12 140462372 140462553 -3323902 + (TG)n Simple_repeat Simple_repeat 1 170 0 200 160 11 66 chr12 140462619 140462800 -3323655 + (TG)n Simple_repeat Simple_repeat 1 171 0 393 106 0 171 chr12 140462846 140463063 -3323392 + (TG)n Simple_repeat Simple_repeat 1 180 0 199 172 0 62 chr12 140463084 140463148 -3323307 + (TG)n Simple_repeat Simple_repeat 2 61 0 2188 98 3 0 chr12 140463416 140463711 -3322744 - AluSx SINE Alu -16 296 1 194 382 46 15 chr12 140464407 140464538 -3321917 - L2 LINE L2 -562 2752 2618 225 253 0 0 chr12 140464665 140464811 -3321644 + CT-rich Low_complexity Low_complexity 2 147 0 427 307 0 0 chr12 140464869 140465045 -3321410 + CT-rich Low_complexity Low_complexity 2 177 0 326 98 0 0 chr12 140465381 140465432 -3321023 + U5 snRNA snRNA 1 51 -65 357 310 0 18 chr12 140466453 140466584 -3319871 + MIR SINE MIR 21 143 -65 448 368 91 24 chr12 140466588 140467135 -3319320 + MLT1K LTR MaLR 2 585 -3 344 250 222 7 chr12 140467180 140467324 -3319131 - MER96 DNA MER1_type? 0 175 1 184 174 65 43 chr12 140467324 140467370 -3319085 + L2 LINE L2 3267 3313 0 450 224 51 56 chr12 140468070 140468266 -3318189 - MER106A DNA MER1_type -4 232 38 344 312 43 22 chr12 140468710 140468848 -3317607 + L2 LINE L2 3173 3313 0 503 151 0 32 chr12 140469116 140469242 -3317213 + (GGGTG)n Simple_repeat Simple_repeat 3 124 0 270 256 31 6 chr12 140470491 140470651 -3315804 + (CA)n Simple_repeat Simple_repeat 2 165 0 326 325 122 32 chr12 140470685 140471192 -3315263 - L1MC4 LINE L1 -130 7912 7360 479 260 52 19 chr12 140472166 140472367 -3314088 - MIR SINE MIR -37 171 9 457 251 209 11 chr12 140472907 140473094 -3313361 + MER58A DNA MER1_type 1 224 0 212 337 0 0 chr12 140473594 140473677 -3312778 + CT-rich Low_complexity Low_complexity 3 85 0 296 306 25 25 chr12 140473751 140473908 -3312547 + MLT1K LTR MaLR 396 552 -36 409 194 92 0 chr12 140473939 140474080 -3312375 - MIR SINE MIR -65 143 1 323 325 76 6 chr12 140475694 140475851 -3310604 - MER5A DNA MER1_type -21 168 1 516 200 83 83 chr12 140478562 140478767 -3307688 + MLT1J2 LTR MaLR 242 450 0 231 235 189 12 chr12 140478778 140479021 -3307434 + L1ME4a LINE L1 5833 6118 -3 2302 107 3 0 chr12 140479547 140479857 -3306598 - AluSx SINE Alu -1 311 1 199 228 0 53 chr12 140480206 140480263 -3306192 + L2 LINE L2 3214 3267 -5 339 353 52 9 chr12 140480410 140480642 -3305813 + Charlie8 DNA MER1_type 38 279 -2138 976 228 62 0 chr12 140480953 140481164 -3305291 - MER58A DNA MER1_type 0 224 1 992 198 23 19 chr12 140481176 140481439 -3305016 - MER33 DNA MER1_type -5 319 56 2235 129 0 0 chr12 140481553 140481864 -3304591 + AluSx SINE Alu 1 311 -1 6480 58 33 61 chr12 140482092 140484555 -3301900 + SVA Other Other 1 1385 -1 315 256 94 98 chr12 140484574 140484840 -3301615 + MER102a DNA MER1_type 66 330 0 308 300 50 8 chr12 140485449 140485569 -3300886 + L2 LINE L2 3147 3271 -1 421 259 29 22 chr12 140486218 140486357 -3300098 + MLT1L LTR MaLR 139 278 -337 334 275 52 13 chr12 140486607 140486762 -3299693 - MIR SINE MIR -21 187 29 205 326 35 23 chr12 140486817 140486903 -3299552 + L2 LINE L2 3138 3224 -48 333 0 0 0 chr12 140486905 140486942 -3299513 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 510 257 92 69 chr12 140487077 140487328 -3299127 - MIR SINE MIR 0 262 3 2263 107 0 0 chr12 140488168 140488476 -3297979 - AluSx SINE Alu -4 308 1 602 197 128 0 chr12 140488478 140488595 -3297860 - FLAM_A SINE Alu -1 132 1 567 260 199 0 chr12 140488628 140488824 -3297631 - MIR SINE MIR -21 241 7 721 288 117 60 chr12 140491263 140491812 -3294643 + MLT1K LTR MaLR 2 581 -7 194 304 0 0 chr12 140492077 140492123 -3294332 - L2 LINE L2 -11 3261 3216 1205 212 40 7 chr12 140492205 140492483 -3293972 + L1MB5 LINE L1 5888 6174 0 3332 225 31 16 chr12 140493578 140494462 -3291993 + L1M4 LINE L1 4070 4974 -1172 2292 79 3 7 chr12 140494462 140494765 -3291690 + AluSq SINE Alu 1 302 -11 3332 225 31 16 chr12 140494765 140495104 -3291351 + L1M4 LINE L1 4974 5306 -840 1293 205 22 7 chr12 140495107 140495380 -3291075 + AluJo SINE Alu 31 307 -5 229 28 56 0 chr12 140495380 140495416 -3291039 + (GA)n Simple_repeat Simple_repeat 1 38 0 649 191 0 13 chr12 140495416 140495573 -3290882 + GA-rich Low_complexity Low_complexity 2 156 0 1524 134 4 4 chr12 140495614 140495852 -3290603 + L1MC1 LINE L1 6094 6331 -2 793 273 41 9 chr12 140497073 140497293 -3289162 - MIR SINE MIR -32 230 4 207 204 0 0 chr12 140497757 140497801 -3288654 + GA-rich Low_complexity Low_complexity 3 46 0 231 293 0 0 chr12 140497813 140497871 -3288584 + GA-rich Low_complexity Low_complexity 3 60 0 253 235 130 26 chr12 140497929 140498044 -3288411 - MIR SINE MIR -96 166 40 362 257 211 17 chr12 140498593 140498768 -3287687 - MIR SINE MIR -11 251 43 349 291 74 48 chr12 140498955 140499226 -3287229 - L1ME4a LINE L1 -256 5865 5588 2217 93 0 0 chr12 140499615 140499905 -3286550 + AluSx SINE Alu 1 290 -22 2366 65 0 0 chr12 140499911 140500203 -3286252 + AluY SINE Alu 3 294 -17 405 0 0 0 chr12 140500450 140500495 -3285960 + (TG)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr12 140501586 140501607 -3284848 + AT_rich Low_complexity Low_complexity 1 21 0 914 226 11 0 chr12 140502206 140502387 -3284068 - MIR SINE MIR -74 188 6 530 257 71 68 chr12 140502996 140503276 -3283179 - Charlie8 DNA MER1_type -2050 367 87 1664 167 0 14 chr12 140503278 140503571 -3282884 - AluJo SINE Alu -23 289 1 329 263 35 26 chr12 140503786 140503900 -3282555 - MER5A DNA MER1_type -28 161 47 272 191 16 16 chr12 140503966 140504029 -3282426 + MIR3 SINE MIR 109 171 -37 402 259 9 9 chr12 140504433 140504545 -3281910 + L3 LINE CR1 1311 1422 -155 341 163 70 12 chr12 140504721 140504807 -3281648 - L1MB1 LINE L1 -2 6166 6076 307 319 86 55 chr12 140504912 140505169 -3281286 - L2 LINE L2 -50 3222 2958 273 198 12 25 chr12 140505823 140505904 -3280551 + MER113 DNA MER1_type? 37 116 -405 843 136 0 23 chr12 140506369 140506501 -3279954 - FLAM_C SINE Alu 0 133 5 216 264 11 33 chr12 140506653 140506744 -3279711 + MIR SINE MIR 173 261 -1 466 273 85 6 chr12 140506917 140507082 -3279373 - MIR SINE MIR -62 200 23 388 281 256 0 chr12 140507121 140507320 -3279135 - Charlie8 DNA MER1_type -2142 275 26 21 57 0 0 chr12 140509021 140509056 -3277399 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr12 140509067 140509113 -3277342 + AT_rich Low_complexity Low_complexity 1 46 0 3744 119 10 0 chr12 140510510 140511032 -3275423 - MER1A DNA MER1_type 0 527 1 830 110 16 0 chr12 140513388 140513515 -3272940 + FLAM_C SINE Alu 1 129 -14 453 314 29 87 chr12 140513962 140514274 -3272181 + L1MC4a LINE L1 3906 4199 -1947 214 261 192 8 chr12 140514285 140514415 -3272040 - MIR SINE MIR -32 230 77 342 359 46 26 chr12 140514644 140514839 -3271616 - L1ME LINE L1 -317 5804 5606 986 312 111 37 chr12 140515027 140515592 -3270863 + L1MC4a LINE L1 4256 4890 -1256 2354 83 3 0 chr12 140515592 140515904 -3270551 - AluSq SINE Alu 0 313 1 986 312 111 37 chr12 140515904 140516076 -3270379 + L1MC4a LINE L1 4890 5048 -1098 1288 268 95 28 chr12 140516173 140516785 -3269670 + L1MC4a LINE L1 5276 5928 -1880 2583 42 0 0 chr12 140516958 140517269 -3269186 - AluY SINE Alu 0 311 1 411 319 75 35 chr12 140518317 140518571 -3267884 - Charlie8 DNA MER1_type -2133 284 21 294 326 0 0 chr12 140518838 140518927 -3267528 + GA-rich Low_complexity Low_complexity 1 89 0 366 300 217 13 chr12 140519293 140519606 -3266849 + L2 LINE L2 2887 3263 -50 222 37 0 0 chr12 140519619 140519646 -3266809 + (TG)n Simple_repeat Simple_repeat 1 27 0 207 204 0 0 chr12 140519719 140519763 -3266692 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 212 272 76 33 chr12 140520345 140520437 -3266018 + MIR3 SINE MIR 103 198 -10 1833 149 3 0 chr12 140520731 140521013 -3265442 - AluJo SINE Alu -24 288 6 261 275 72 0 chr12 140521017 140521086 -3265369 - L2 LINE L2 -11 3302 3229 2123 105 0 0 chr12 140521809 140522105 -3264350 + AluSx SINE Alu 1 296 -16 202 93 23 23 chr12 140522115 140522158 -3264297 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 258 330 19 0 chr12 140522161 140522264 -3264191 + GA-rich Low_complexity Low_complexity 1 105 0 213 281 0 18 chr12 140522705 140522762 -3263693 + (TG)n Simple_repeat Simple_repeat 2 57 0 313 269 6 6 chr12 140522775 140522942 -3263513 + (TG)n Simple_repeat Simple_repeat 2 168 0 418 361 0 6 chr12 140522987 140523211 -3263244 + (TG)n Simple_repeat Simple_repeat 1 222 0 352 317 11 33 chr12 140523274 140523457 -3262998 + (TG)n Simple_repeat Simple_repeat 1 179 0 1947 124 0 20 chr12 140524220 140524526 -3261929 + AluSx SINE Alu 1 300 -12 1913 114 50 17 chr12 140525048 140525345 -3261110 + AluSx SINE Alu 5 311 -1 215 61 30 0 chr12 140526553 140526586 -3259869 + (TG)n Simple_repeat Simple_repeat 2 35 0 525 283 59 16 chr12 140527063 140527250 -3259205 + MIR SINE MIR 65 259 -3 477 280 58 34 chr12 140528243 140528450 -3258005 + L2 LINE L2 3077 3288 -25 3789 174 30 48 chr12 140528455 140528912 -3257543 - LTR39 LTR ERV1 0 783 319 1969 94 7 14 chr12 140528912 140529189 -3257266 + AluSx SINE Alu 28 302 -10 3789 174 30 48 chr12 140529189 140529454 -3257001 - LTR39 LTR ERV1 -464 319 73 2110 100 3 19 chr12 140529454 140529765 -3256690 - AluSg SINE Alu -4 306 1 3789 174 30 48 chr12 140529765 140529809 -3256646 - LTR39 LTR ERV1 -710 73 30 237 325 37 48 chr12 140530690 140530878 -3255577 + MLT1K LTR MaLR 182 367 -221 2154 199 55 66 chr12 140531790 140532409 -3254046 - LTR9 LTR ERV1 0 612 1 2176 108 0 3 chr12 140532475 140532782 -3253673 - AluSx SINE Alu -6 306 1 473 261 71 81 chr12 140532926 140533248 -3253207 + MLT1J LTR MaLR 6 324 -187 1977 229 173 102 chr12 140533249 140534757 -3251698 + L1MCc LINE L1 25 1637 -4887 * 2610 272 30 42 chr12 140534754 140535403 -3251052 + L1MCc LINE L1 1548 2203 -4738 1025 141 17 6 chr12 140535403 140535580 -3250875 + L1MB7 LINE L1 5990 6168 -16 2610 272 30 42 chr12 140535580 140536886 -3249569 + L1MCc LINE L1 2203 3629 -3312 458 233 26 0 chr12 140536894 140537010 -3249445 + L1MB7 LINE L1 6038 6156 -28 383 261 17 0 chr12 140536998 140537113 -3249342 + L1MCc LINE L1 5047 5163 -1778 * 432 231 52 22 chr12 140537215 140537349 -3249106 + L1ME1 LINE L1 6022 6159 -7 398 262 0 28 chr12 140537366 140537473 -3248982 + MLT1J LTR MaLR 316 419 -92 2247 97 3 3 chr12 140537505 140537813 -3248642 + AluSg SINE Alu 1 308 -2 378 315 91 35 chr12 140538502 140538734 -3247721 - MLT1K LTR MaLR -2 586 342 358 330 52 57 chr12 140538788 140538930 -3247525 - MLT1K LTR MaLR -358 230 88 668 274 90 51 chr12 140538930 140539320 -3247135 + MLT1I LTR MaLR 5 409 0 358 330 52 57 chr12 140539320 140539389 -3247066 - MLT1K LTR MaLR -500 88 20 1183 198 32 16 chr12 140539535 140539783 -3246672 + MLT1A2 LTR MaLR 112 363 -11 219 310 171 6 chr12 140539793 140539951 -3246504 + L2 LINE L2 2869 3052 -220 374 267 17 0 chr12 140539951 140540067 -3246388 + L1MDb LINE L1 1021 1138 -5271 2119 213 113 71 chr12 140540234 140540796 -3245659 + L1MDb LINE L1 1145 1682 -4724 1985 98 11 7 chr12 140540796 140541083 -3245372 + AluY SINE Alu 1 288 -23 2119 213 113 71 chr12 140541083 140541107 -3245348 + L1MDb LINE L1 1682 1704 -4702 225 0 0 0 chr12 140541107 140541132 -3245323 + (TA)n Simple_repeat Simple_repeat 1 25 0 2119 213 113 71 chr12 140541132 140541228 -3245227 + L1MDb LINE L1 1704 1795 -4611 1618 170 21 10 chr12 140541228 140541517 -3244938 + AluJo SINE Alu 1 292 -20 2119 213 113 71 chr12 140541517 140541807 -3244648 + L1MDb LINE L1 1795 2160 -4246 643 209 0 22 chr12 140541807 140541941 -3244514 + FLAM_A SINE Alu 2 132 -1 1046 254 62 63 chr12 140542235 140542512 -3243943 + L1MDb LINE L1 2332 2578 -3828 3460 51 19 0 chr12 140542512 140542940 -3243515 - L1PA6 LINE L1 -2 6152 5717 1046 254 62 63 chr12 140542940 140543189 -3243266 + L1MDb LINE L1 2578 2826 -3580 2164 155 68 141 chr12 140543190 140543745 -3242710 + MLT2B3 LTR ERVL 1 515 -5 1899 225 52 19 chr12 140543750 140544292 -3242163 + L1MDb LINE L1 2824 3383 -3023 250 301 0 35 chr12 140544270 140544383 -3242072 + L1MDb LINE L1 3282 3390 -3016 * 499 378 17 17 chr12 140544745 140544978 -3241477 - MIR SINE MIR -17 245 13 589 167 8 8 chr12 140545537 140545669 -3240786 + GA-rich Low_complexity Low_complexity 4 135 0 293 342 90 27 chr12 140545726 140545812 -3240643 - L2 LINE L2 -207 3065 2986 1438 103 192 35 chr12 140545812 140546073 -3240382 + AluSx SINE Alu 1 302 -10 293 342 90 27 chr12 140546073 140546633 -3239822 - L2 LINE L2 -286 2986 2377 2003 117 7 0 chr12 140548534 140548825 -3237630 - AluSx SINE Alu -19 293 1 1717 171 7 10 chr12 140548877 140549186 -3237269 - AluJb SINE Alu -4 308 1 2232 108 3 0 chr12 140549541 140549847 -3236608 + AluSp SINE Alu 1 307 -6 847 205 5 21 chr12 140550476 140550666 -3235789 - AluJb SINE Alu -12 300 114 491 282 28 14 chr12 140550672 140550814 -3235641 - MIR SINE MIR -106 156 13 1487 118 0 0 chr12 140551400 140551612 -3234843 + AluJb SINE Alu 85 296 -16 228 194 32 32 chr12 140552158 140552220 -3234235 - MLT1K LTR MaLR -75 513 452 1878 155 10 3 chr12 140552345 140552655 -3233800 - AluJb SINE Alu 0 312 1 577 122 0 0 chr12 140552664 140552746 -3233709 - AluJ SINE Alu -24 288 207 852 120 0 38 chr12 140552756 140552889 -3233566 - AluJ SINE Alu -174 128 1 811 179 0 0 chr12 140553532 140553666 -3232789 + FRAM SINE Alu 22 155 -21 1389 174 3 37 chr12 140553670 140553969 -3232486 + AluJb SINE Alu 1 289 -23 1998 106 0 7 chr12 140554214 140554506 -3231949 - AluSc SINE Alu -19 290 1 278 238 0 36 chr12 140555535 140555619 -3230836 + LTR33 LTR ERVL 54 134 -387 2321 71 0 6 chr12 140555699 140556010 -3230445 + AluSx SINE Alu 1 309 -3 613 219 59 53 chr12 140556093 140556280 -3230175 + L1ME LINE L1 5342 5529 -635 324 319 29 59 chr12 140556424 140556568 -3229887 - Charlie8 DNA MER1_type -141 200 62 2155 103 3 3 chr12 140556568 140556880 -3229575 + AluSq SINE Alu 1 312 -1 324 319 29 59 chr12 140556880 140556939 -3229516 - Charlie8 DNA MER1_type -279 62 3 1944 177 8 19 chr12 140557012 140557380 -3229075 - MLT1A1 LTR MaLR -1 364 1 368 301 140 48 chr12 140558249 140558435 -3228020 + MIR SINE MIR 52 254 -8 452 216 82 37 chr12 140558799 140558933 -3227522 + MLT1J2 LTR MaLR 272 411 -39 312 54 0 0 chr12 140559014 140559051 -3227404 + MSTA LTR MaLR 1 37 -391 2240 126 126 3 chr12 140559054 140559435 -3227020 + MSTA LTR MaLR 1 428 0 349 260 125 0 chr12 140559618 140559722 -3226733 + LTR67 LTR ERVL 441 557 0 553 278 144 49 chr12 140560252 140560598 -3225857 - MLT1J2 LTR MaLR -22 428 50 207 313 62 36 chr12 140563241 140563353 -3223102 + MER5A DNA MER1_type 15 129 -60 322 267 95 9 chr12 140564526 140564631 -3221824 + L2 LINE L2 3200 3313 0 1684 159 26 23 chr12 140564659 140564961 -3221494 + AluJo SINE Alu 1 303 -9 2357 60 0 10 chr12 140564989 140565303 -3221152 + AluY SINE Alu 1 311 0 3221 230 56 8 chr12 140565308 140566275 -3220180 - L1M LINE L1 -846 5300 4297 1153 134 0 6 chr12 140566275 140566454 -3220001 - AluSg/x SINE Alu -12 300 123 2864 261 63 22 chr12 140566580 140568130 -3218325 - L1MEc LINE L1 -3373 2842 1278 333 148 19 0 chr12 140568151 140568205 -3218250 + Tigger5 DNA MER2_type 1 55 -2268 289 194 16 16 chr12 140568177 140568239 -3218216 + Tigger5 DNA MER2_type 2254 2315 -8 * 517 174 0 0 chr12 140568301 140568387 -3218068 + Tigger5 DNA MER2_type 2238 2323 0 2840 246 61 51 chr12 140568389 140568538 -3217917 - L1MEc LINE L1 -5167 1229 1083 1555 192 3 3 chr12 140568538 140568829 -3217626 - AluJb SINE Alu -21 291 1 2840 246 61 51 chr12 140568829 140569062 -3217393 - L1MEc LINE L1 -5313 1083 854 1999 108 3 14 chr12 140569062 140569394 -3217061 + AluSc SINE Alu 1 309 0 2840 246 61 51 chr12 140569394 140570170 -3216285 - L1MEc LINE L1 -5542 854 58 30 77 0 0 chr12 140571387 140571452 -3215003 + AT_rich Low_complexity Low_complexity 1 65 0 237 86 57 0 chr12 140571512 140571547 -3214908 + Alu SINE Alu 1 37 -96 2154 99 0 10 chr12 140571547 140571850 -3214605 - AluSq SINE Alu -12 301 2 1839 131 33 13 chr12 140572948 140573253 -3213202 - AluSq SINE Alu -2 311 1 1905 142 3 0 chr12 140575152 140575448 -3211007 + AluSx SINE Alu 4 300 -12 563 193 80 57 chr12 140575622 140575770 -3210685 + MLT1D LTR MaLR 4 158 -347 853 94 86 0 chr12 140575770 140575898 -3210557 + MER85 DNA T2_type 1 139 0 563 193 80 57 chr12 140575898 140575925 -3210530 + MLT1D LTR MaLR 158 183 -322 1229 199 16 52 chr12 140576031 140576338 -3210117 + AluJb SINE Alu 1 296 -6 2954 120 9 15 chr12 140576507 140576973 -3209482 + MER11C LTR ERVK 595 1057 -14 729 133 0 59 chr12 140577165 140577323 -3209132 + FRAM SINE Alu 1 40 0 229 220 0 20 chr12 140577328 140577378 -3209077 + GA-rich Low_complexity Low_complexity 2 50 0 973 131 0 27 chr12 140577379 140577562 -3208893 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1222 130 26 10 chr12 140577607 140577799 -3208656 + AluJo SINE Alu 87 281 -31 704 33 80 7 chr12 140577801 140577951 -3208504 + (TA)n Simple_repeat Simple_repeat 1 161 0 286 206 31 69 chr12 140577969 140578129 -3208326 + (CATATA)n Simple_repeat Simple_repeat 6 159 0 1804 113 0 0 chr12 140578241 140578507 -3207948 - AluY SINE Alu -45 266 1 231 400 15 15 chr12 140578511 140578646 -3207809 + L2 LINE L2 2895 3029 -284 1862 187 8 35 chr12 140578913 140579288 -3207167 - MLT1A1 LTR MaLR 0 365 1 704 194 8 16 chr12 140579779 140579908 -3206547 + FLAM_C SINE Alu 4 131 -12 440 274 24 0 chr12 140579967 140580091 -3206364 + L1MEc LINE L1 35 161 -6235 1458 139 0 29 chr12 140581993 140582237 -3204218 - AluJo SINE Alu -8 304 68 756 109 9 0 chr12 140582238 140582348 -3204107 + HY1 scRNA scRNA 1 111 -1 34 0 0 0 chr12 140582348 140582382 -3204073 + AT_rich Low_complexity Low_complexity 1 34 0 405 240 0 0 chr12 140582384 140582459 -3203996 - AluS SINE Alu -227 75 1 189 366 0 0 chr12 140582539 140582610 -3203845 + L2 LINE L2 2665 2735 -579 657 222 26 13 chr12 140582870 140583022 -3203433 - MER50 LTR ERV1 -566 168 15 1853 243 88 13 chr12 140583022 140583545 -3202910 + MLT1E2 LTR MaLR 1 562 -64 2127 84 0 7 chr12 140583594 140583879 -3202576 - AluSx SINE Alu -29 283 1 431 294 18 46 chr12 140584413 140584695 -3201760 - AluSq SINE Alu -3 310 37 259 192 82 43 chr12 140584981 140585096 -3201359 + MLT1D LTR MaLR 349 505 0 778 219 150 59 chr12 140585100 140585406 -3201049 - Charlie1b DNA MER1_type -183 340 7 1883 133 17 0 chr12 140585430 140585724 -3200731 + AluSx SINE Alu 1 299 -13 1072 152 160 13 chr12 140586235 140586466 -3199989 - AluJb SINE Alu -47 265 1 346 234 26 125 chr12 140587512 140587704 -3198751 + L1MC5 LINE L1 7759 7931 -30 184 275 0 0 chr12 140588327 140588367 -3198088 + MIR SINE MIR 113 152 -110 666 126 10 0 chr12 140588835 140588938 -3197517 - AluY SINE Alu -19 292 189 1721 144 0 22 chr12 140589687 140589965 -3196490 - AluSx SINE Alu -37 275 4 238 283 13 17 chr12 140590256 140590393 -3196062 + A-rich Low_complexity Low_complexity 1 229 0 311 296 0 65 chr12 140590513 140590682 -3195773 + C-rich Low_complexity Low_complexity 6 163 0 221 286 55 0 chr12 140591100 140591191 -3195264 + MIR SINE MIR 158 253 -9 1694 163 14 0 chr12 140592646 140592934 -3193521 - AluJb SINE Alu -20 292 1 911 310 41 43 chr12 140592978 140593635 -3192820 - L2 LINE L2 -14 3299 2639 1490 153 59 35 chr12 140593635 140593923 -3192532 + AluJo SINE Alu 1 295 -17 911 310 41 43 chr12 140593923 140594050 -3192405 - L2 LINE L2 -674 2639 2513 560 203 168 0 chr12 140594061 140594204 -3192251 + L1MB8 LINE L1 6011 6177 -1 430 203 110 65 chr12 140594206 140594361 -3192094 - L2 LINE L2 -800 2514 2343 2017 136 0 3 chr12 140594361 140594662 -3191793 - AluJo SINE Alu -12 300 1 430 203 110 65 chr12 140594662 140594752 -3191703 - L2 LINE L2 -971 2343 2258 308 277 62 77 chr12 140595500 140595628 -3190827 + MIR SINE MIR 60 188 -74 886 184 24 0 chr12 140595637 140595805 -3190650 + FAM SINE Alu 1 172 -3 308 277 62 77 chr12 140595718 140595862 -3190593 + MIR SINE MIR 188 251 -11 287 157 12 0 chr12 140597279 140597356 -3189099 + L1MD3 LINE L1 7942 8042 0 2219 124 0 0 chr12 140597360 140597659 -3188796 + AluSx SINE Alu 1 299 -13 2033 134 7 26 chr12 140598323 140598630 -3187825 - AluJb SINE Alu -11 301 1 374 276 122 61 chr12 140598680 140598894 -3187561 + L1MC5 LINE L1 7478 7704 -257 1716 165 72 0 chr12 140599616 140599895 -3186560 + AluJo SINE Alu 1 299 -13 339 188 31 0 chr12 140600222 140600286 -3186169 + MSTB1 LTR MaLR 137 202 -230 1358 74 0 0 chr12 140600288 140600451 -3186004 + AluY SINE Alu 139 301 -10 1040 136 57 1 chr12 140600466 140600673 -3185782 + MSTB1 LTR MaLR 198 432 0 344 283 142 50 chr12 140600982 140601441 -3185014 - L2 LINE L2 -7 3306 2806 326 311 76 0 chr12 140601720 140601852 -3184603 + MIR3 SINE MIR 19 160 -48 524 210 31 117 chr12 140601901 140602054 -3184401 - LTR37B LTR ERV1 0 468 350 965 218 127 53 chr12 140602054 140602394 -3184061 - MLT1A1 LTR MaLR 0 365 1 524 210 31 117 chr12 140602394 140602531 -3183924 - LTR37B LTR ERV1 -118 350 203 22 35 0 0 chr12 140602718 140602747 -3183708 + AT_rich Low_complexity Low_complexity 1 29 0 746 220 88 69 chr12 140602752 140603184 -3183271 - MER113 DNA MER1_type? -79 442 3 2140 135 6 6 chr12 140603556 140603867 -3182588 - AluSx SINE Alu -1 311 1 2423 156 34 22 chr12 140603887 140604542 -3181913 - MER50-int LTR ERV1 -6470 735 1 1245 151 5 28 chr12 140604567 140604785 -3181670 - MER50 LTR ERV1 -23 711 499 721 266 81 86 chr12 140604823 140605380 -3181075 - MER41C LTR ERV1 0 554 1 186 133 0 0 chr12 140605915 140605945 -3180510 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 213 233 0 0 chr12 140606038 140606081 -3180374 + (ATG)n Simple_repeat Simple_repeat 2 44 0 845 185 6 0 chr12 140606083 140606261 -3180194 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 189 171 0 0 chr12 140606265 140606300 -3180155 + (ATG)n Simple_repeat Simple_repeat 1 35 0 283 143 41 0 chr12 140606313 140606362 -3180093 - MER69 DNA AcHobo -14 2512 2462 353 259 126 42 chr12 140606363 140606506 -3179949 + MIR SINE MIR 43 197 -65 252 283 43 0 chr12 140606715 140606807 -3179648 - MIR SINE MIR -9 253 158 244 265 200 0 chr12 140607198 140607368 -3179087 + L2 LINE L2 1545 1748 -1566 1000 317 87 11 chr12 140607649 140608261 -3178194 + L2 LINE L2 1814 2471 -843 289 278 62 40 chr12 140608261 140608437 -3178018 - LTR33 LTR ERVL -8 513 334 1624 250 62 98 chr12 140608983 140609266 -3177189 + L1MB8 LINE L1 655 946 -5617 723 203 0 0 chr12 140609266 140609389 -3177066 + FLAM_C SINE Alu 1 123 -10 1624 250 62 98 chr12 140609389 140609401 -3177054 + L1MB8 LINE L1 946 957 -5606 1782 152 3 34 chr12 140609401 140609697 -3176758 + AluJb SINE Alu 11 297 -15 1624 250 62 98 chr12 140609697 140610631 -3175824 + L1MB8 LINE L1 957 2024 -4539 2344 248 57 31 chr12 140610655 140610694 -3175761 + L1MB8 LINE L1 5494 5531 -883 2074 148 7 3 chr12 140610694 140610999 -3175456 + AluJb SINE Alu 1 306 -6 2344 248 57 31 chr12 140610999 140611443 -3175012 + L1MB8 LINE L1 5531 5962 -452 2186 57 60 0 chr12 140611443 140611737 -3174718 + AluY SINE Alu 1 310 0 2344 248 57 31 chr12 140611737 140612139 -3174316 + L1MB8 LINE L1 5962 6404 -10 1313 233 88 0 chr12 140613886 140614203 -3172252 - L1MB5 LINE L1 -47 6127 5783 202 219 52 21 chr12 140614339 140614435 -3172020 + (CAT)n Simple_repeat Simple_repeat 1 99 0 * 425 216 45 23 chr12 140614412 140614588 -3171867 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 376 202 46 46 chr12 140614719 140614892 -3171563 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 259 236 58 23 chr12 140614957 140615131 -3171324 + (CAT)n Simple_repeat Simple_repeat 1 180 0 234 159 51 85 chr12 140615193 140615369 -3171086 + (CACAT)n Simple_repeat Simple_repeat 3 172 0 * 397 192 42 36 chr12 140615254 140615476 -3170979 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 335 212 33 54 chr12 140615569 140615753 -3170702 + (CAT)n Simple_repeat Simple_repeat 1 180 0 226 213 27 75 chr12 140615817 140616005 -3170450 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2757 196 56 41 chr12 140616011 140616595 -3169860 - MER21A LTR ERV1 -44 887 220 2148 127 7 0 chr12 140616595 140616894 -3169561 - AluSx SINE Alu -11 301 1 2757 196 56 41 chr12 140616894 140617106 -3169349 - MER21A LTR ERV1 -711 220 13 292 169 0 143 chr12 140617111 140617188 -3169267 - L1MB5 LINE L1 -13 6161 6096 193 313 128 35 chr12 140617426 140617653 -3168802 + L2 LINE L2 2833 3080 -233 188 397 0 0 chr12 140618892 140618965 -3167490 - L2 LINE L2 -540 2774 2702 350 271 66 7 chr12 140619010 140619161 -3167294 - LTR33 LTR ERVL -56 465 306 657 250 15 13 chr12 140619964 140620290 -3166165 + MLT2C1 LTR ERVL 1 358 -39 224 207 92 0 chr12 140620292 140620428 -3166027 + (TCCA)n Simple_repeat Simple_repeat 1 148 0 444 316 0 17 chr12 140620494 140620725 -3165730 + C-rich Low_complexity Low_complexity 1 227 0 318 296 24 34 chr12 140620908 140621084 -3165371 - L1MC4 LINE L1 -1342 6700 6525 990 105 33 0 chr12 140621573 140621726 -3164729 - MSTB LTR MaLR -268 158 1 189 329 49 0 chr12 140621917 140621999 -3164456 + MIR3 SINE MIR 109 194 -14 2391 110 0 0 chr12 140622268 140622577 -3163878 + AluSc SINE Alu 1 309 0 183 100 0 0 chr12 140622582 140622612 -3163843 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 2218 88 0 46 chr12 140623167 140623474 -3162981 - AluY SINE Alu -18 293 1 302 268 0 0 chr12 140623753 140623835 -3162620 + MIR SINE MIR 10 91 -171 342 193 11 45 chr12 140623876 140623964 -3162491 - MER96 DNA MER1_type? -90 85 1 401 344 32 13 chr12 140623966 140624120 -3162335 + MIR SINE MIR 85 241 -21 356 280 131 9 chr12 140624227 140624441 -3162014 + LTR50 LTR ERVL 1 240 -555 259 326 4 34 chr12 140624452 140624877 -3161578 + CT-rich Low_complexity Low_complexity 1 412 0 1630 306 50 9 chr12 140625011 140625648 -3160807 + L1ME1 LINE L1 5499 6161 -5 520 156 41 25 chr12 140625673 140625795 -3160660 + L1MA4 LINE L1 6176 6299 -1 1720 99 0 0 chr12 140625799 140626022 -3160433 + AluSg/x SINE Alu 88 310 -2 2354 83 3 0 chr12 140626740 140627051 -3159404 + AluSx SINE Alu 1 312 0 185 279 82 55 chr12 140627265 140627448 -3159007 - L2 LINE L2 -903 2411 2224 247 91 45 23 chr12 140628105 140628149 -3158306 + MER4A LTR ERV1 54 98 -566 1737 142 8 46 chr12 140628149 140628508 -3157947 + MER4A LTR ERV1 261 664 0 233 246 15 0 chr12 140628547 140628612 -3157843 - MIR SINE MIR -30 232 167 2176 105 0 43 chr12 140628613 140628759 -3157696 + MER4B LTR ERV1 2 153 -457 2072 109 35 3 chr12 140628759 140629043 -3157412 - AluSx SINE Alu -19 293 1 2176 105 0 43 chr12 140629043 140629247 -3157208 + MER4B LTR ERV1 153 337 -273 1600 128 157 80 chr12 140629247 140629622 -3156833 - MER4A LTR ERV1 0 664 261 493 133 89 0 chr12 140629622 140629712 -3156743 - MER4A LTR ERV1 -566 98 1 1471 164 21 21 chr12 140629712 140629992 -3156463 + MER4E LTR ERV1 487 766 0 488 203 4 48 chr12 140629992 140630133 -3156322 - MIR SINE MIR -65 143 35 243 371 40 11 chr12 140630255 140630430 -3156025 + L1ME LINE L1 5532 5711 -410 2053 98 54 0 chr12 140631587 140631864 -3154591 - AluSc SINE Alu -17 292 1 499 270 94 19 chr12 140631942 140632101 -3154354 - MIR SINE MIR -7 255 85 799 267 53 40 chr12 140632147 140632447 -3154008 - MLT1I LTR MaLR -6 403 100 1396 167 130 3 chr12 140632536 140632835 -3153620 + MER1B DNA MER1_type 1 337 0 294 335 96 12 chr12 140632874 140633041 -3153414 - MIR SINE MIR -62 200 20 31 108 0 0 chr12 140633112 140633241 -3153214 + AT_rich Low_complexity Low_complexity 1 129 0 366 283 30 10 chr12 140633301 140633400 -3153055 + L1MC4 LINE L1 6603 6703 -1339 392 242 55 115 chr12 140635422 140635751 -3150704 - MLT1L LTR MaLR -194 391 1 321 216 52 9 chr12 140636141 140636257 -3150198 - L1MC4 LINE L1 0 8042 7922 656 101 65 0 chr12 140636269 140636437 -3150018 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2001 243 49 35 chr12 140636521 140637154 -3149301 - L1MC4 LINE L1 -154 7888 7247 980 259 0 0 chr12 140637313 140637533 -3148922 - MER58A DNA MER1_type 0 224 5 2082 111 90 0 chr12 140637779 140638113 -3148342 - THE1B LTR MaLR 0 364 1 533 267 67 1 chr12 140639499 140639768 -3146687 - Charlie8 DNA MER1_type -1002 1415 45 1039 221 109 74 chr12 140639891 140639988 -3146467 - MLT1J LTR MaLR 0 511 419 1759 163 0 0 chr12 140639988 140640252 -3146203 + AluSq SINE Alu 45 308 -5 1039 221 109 74 chr12 140640252 140640602 -3145853 - MLT1J LTR MaLR -92 419 48 2844 47 16 34 chr12 140640625 140641012 -3145443 + L1PA7 LINE L1 5764 6143 -11 238 343 45 52 chr12 140641275 140641561 -3144894 + L2 LINE L2 2989 3272 0 2741 263 88 33 chr12 140641814 140642862 -3143593 + L1MCb LINE L1 1 989 -5575 1437 152 39 26 chr12 140642862 140643171 -3143284 + L1MA9 LINE L1 6000 6312 0 2741 263 88 33 chr12 140643171 140643874 -3142581 + L1MCb LINE L1 989 1651 -4913 3629 168 40 15 chr12 140643874 140644601 -3141854 + L1PB3 LINE L1 5410 6154 0 2741 263 88 33 chr12 140644601 140645134 -3141321 + L1MCb LINE L1 1651 2528 -4036 2440 59 28 0 chr12 140645134 140645421 -3141034 - AluSc SINE Alu -14 295 1 2741 263 88 33 chr12 140645421 140645452 -3141003 + L1MCb LINE L1 2528 2556 -4008 750 265 28 11 chr12 140645576 140645757 -3140698 + L1M4 LINE L1 4019 4202 -1944 2056 122 22 53 chr12 140645757 140646076 -3140379 - AluSx SINE Alu -3 309 1 1644 255 16 14 chr12 140646076 140646499 -3139956 - L1MB1 LINE L1 -41 6127 5704 433 328 87 11 chr12 140647358 140647645 -3138810 + LTR33A LTR ERVL 1 309 -214 1948 203 35 0 chr12 140647708 140648078 -3138377 + MLT1B LTR MaLR 8 390 0 271 296 51 0 chr12 140648147 140648245 -3138210 + Charlie8 DNA MER1_type 319 421 -1996 429 330 105 12 chr12 140649091 140649652 -3136803 + L2 LINE L2 2685 3311 -2 210 239 0 0 chr12 140649786 140649832 -3136623 + G-rich Low_complexity Low_complexity 4 49 0 189 229 0 0 chr12 140649914 140649962 -3136493 + CT-rich Low_complexity Low_complexity 1 48 0 279 257 0 0 chr12 140650410 140650581 -3135874 + (TG)n Simple_repeat Simple_repeat 1 171 0 285 271 0 0 chr12 140650660 140650837 -3135618 + (TG)n Simple_repeat Simple_repeat 1 177 0 219 259 0 0 chr12 140650928 140651067 -3135388 + (TG)n Simple_repeat Simple_repeat 1 139 0 341 151 0 23 chr12 140651657 140651743 -3134712 - L1M4 LINE L1 -798 5348 5265 1725 293 114 6 chr12 140651768 140652488 -3133967 + MER69 DNA AcHobo 2 799 -1727 17840 159 12 11 chr12 140652529 140654474 -3131981 - L1PA14 LINE L1 0 6161 4219 2145 106 10 7 chr12 140654474 140654766 -3131689 + AluSg SINE Alu 1 293 -17 17840 159 12 11 chr12 140654766 140655826 -3130629 - L1PA14 LINE L1 -1942 4219 3161 186 43 0 0 chr12 140655826 140655849 -3130606 + (TG)n Simple_repeat Simple_repeat 2 24 0 17840 159 12 11 chr12 140655849 140657276 -3129179 - L1PA14 LINE L1 -3000 3161 1726 1481 177 44 48 chr12 140657276 140657448 -3129007 + MER69 DNA AcHobo 2112 2283 -243 538 175 8 8 chr12 140657448 140657568 -3128887 + L1MA4 LINE L1 6174 6293 -7 1481 177 44 48 chr12 140657568 140657807 -3128648 + MER69 DNA AcHobo 2283 2521 -5 232 296 15 15 chr12 140657814 140657946 -3128509 - L1M4 LINE L1 -900 5246 5115 1061 334 81 24 chr12 140658078 140658694 -3127761 - L1M4 LINE L1 -1200 4946 4296 2202 134 3 3 chr12 140658790 140659097 -3127358 - AluJb SINE Alu -5 307 1 2087 164 0 0 chr12 140660049 140660361 -3126094 - AluJb SINE Alu 0 312 1 2554 179 14 4 chr12 140660957 140661449 -3125006 - L1MB5 LINE L1 0 6174 5678 282 179 0 0 chr12 140662608 140662664 -3123791 + (TG)n Simple_repeat Simple_repeat 2 57 0 267 103 0 0 chr12 140662715 140662754 -3123701 + (TC)n Simple_repeat Simple_repeat 1 39 0 439 95 27 0 chr12 140662890 140662964 -3123491 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 276 265 71 0 chr12 140665253 140665351 -3121104 - MER5A DNA MER1_type -84 105 1 186 254 0 0 chr12 140665672 140665739 -3120716 + CT-rich Low_complexity Low_complexity 2 68 0 4857 216 53 7 chr12 140665833 140666994 -3119461 + Tigger3b DNA MER2_type 17 1231 0 234 308 50 56 chr12 140667220 140667418 -3119037 + L1M4 LINE L1 3593 3789 -2357 2275 127 0 0 chr12 140667501 140667800 -3118655 - AluSx SINE Alu -13 299 1 263 266 149 11 chr12 140668174 140668268 -3118187 - L2 LINE L2 -4 3309 3203 399 145 0 0 chr12 140668276 140668345 -3118110 + (TG)n Simple_repeat Simple_repeat 2 70 0 193 263 18 0 chr12 140669404 140669461 -3116994 + L2 LINE L2 3200 3257 -15 314 303 35 35 chr12 140669718 140669860 -3116595 - MIR SINE MIR -83 179 38 1999 144 7 0 chr12 140670062 140670353 -3116102 - AluJo SINE Alu -19 293 1 1720 216 47 7 chr12 140670358 140670761 -3115694 - L1MB7 LINE L1 -11 6173 5755 195 42 0 0 chr12 140670815 140670839 -3115616 + (TC)n Simple_repeat Simple_repeat 1 24 0 399 310 94 26 chr12 140670911 140671323 -3115132 + L2 LINE L2 2488 3059 -254 315 325 31 46 chr12 140671995 140672189 -3114266 - MIR SINE MIR -70 192 2 518 298 96 28 chr12 140672301 140672519 -3113936 + MIR SINE MIR 27 259 -3 312 280 11 11 chr12 140672551 140672644 -3113811 + MIR SINE MIR 168 260 -2 419 253 89 25 chr12 140673667 140673825 -3112630 + MLT1C LTR MaLR 300 467 0 305 349 0 0 chr12 140673829 140673938 -3112517 - MIR SINE MIR -103 159 51 2159 119 3 0 chr12 140674151 140674463 -3111992 - AluSx SINE Alu 0 312 1 189 0 0 0 chr12 140674918 140674939 -3111516 + (TC)n Simple_repeat Simple_repeat 2 22 0 352 311 0 74 chr12 140675872 140676020 -3110435 - MIR SINE MIR -107 155 19 518 43 14 0 chr12 140676141 140676210 -3110245 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 2279 127 3 0 chr12 140676210 140676518 -3109937 - AluSx SINE Alu -3 309 1 1006 219 106 60 chr12 140677967 140678389 -3108066 - MLT1C LTR MaLR 0 467 6 2181 112 3 63 chr12 140678818 140679013 -3107442 - AluSx SINE Alu -1 311 143 7315 29 0 0 chr12 140679013 140680143 -3106312 - L1PA4 LINE L1 -3 6152 5020 2181 112 3 63 chr12 140680143 140680278 -3106177 - AluSx SINE Alu -169 143 1 1033 168 0 17 chr12 140680909 140681082 -3105373 - FRAM SINE Alu -12 164 1 1752 147 14 24 chr12 140681220 140681512 -3104943 - AluJo SINE Alu -23 289 1 267 320 0 33 chr12 140681781 140681903 -3104552 + L2 LINE L2 2856 2973 -299 674 247 72 77 chr12 140681972 140682414 -3104041 - MER113 DNA MER1_type? -76 445 6 936 337 51 17 chr12 140682683 140683152 -3103303 + L2 LINE L2 2288 2772 -542 464 215 0 0 chr12 140683197 140683290 -3103165 - AluJ/FLAM SINE Alu -218 94 2 195 365 0 0 chr12 140683838 140683901 -3102554 - L2 LINE L2 -7 3306 3244 308 331 190 11 chr12 140684147 140684416 -3102039 - L2 LINE L2 -338 2976 2660 729 249 44 98 chr12 140684679 140685136 -3101319 - MLT1J LTR MaLR -51 460 29 189 94 0 0 chr12 140685480 140685512 -3100943 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 206 293 0 0 chr12 140685704 140685762 -3100693 + MIR SINE MIR 119 176 -86 618 151 0 0 chr12 140685829 140685935 -3100520 + (CCCTA)n Simple_repeat Simple_repeat 3 108 0 442 172 21 41 chr12 140685901 140686046 -3100409 + (CATTC)n Simple_repeat Simple_repeat 2 143 0 * 21 0 0 0 chr12 140686289 140686310 -3100145 + AT_rich Low_complexity Low_complexity 1 21 0 1714 185 3 7 chr12 140687066 140687363 -3099092 - AluJb SINE Alu -16 296 1 460 275 134 37 chr12 140688119 140688388 -3098067 - MLT1K LTR MaLR -6 582 288 1150 268 94 13 chr12 140688533 140688981 -3097474 + MLT1E2 LTR MaLR 143 626 0 2024 107 59 0 chr12 140689311 140689583 -3096872 - AluSq SINE Alu -25 288 1 375 284 78 0 chr12 140689679 140689795 -3096660 - MER112 DNA MER1_type -4 256 132 1035 259 137 5 chr12 140691046 140691455 -3095000 - MLT1C LTR MaLR -4 463 1 505 256 134 0 chr12 140691972 140692144 -3094311 + MLT1K LTR MaLR 379 573 -15 956 254 66 58 chr12 140694896 140695518 -3090937 - MER92B LTR ERV1 -9 627 1 266 237 0 75 chr12 140695683 140695776 -3090679 - Charlie8 DNA MER1_type -1953 464 379 328 253 55 0 chr12 140695797 140695888 -3090567 - L1MA9 LINE L1 -38 6274 6179 249 108 0 0 chr12 140696504 140696541 -3089914 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 334 313 8 30 chr12 140696928 140697062 -3089393 - MIR SINE MIR -9 253 123 489 320 62 74 chr12 140697459 140697727 -3088728 - L1M4 LINE L1 -2919 3227 2964 1003 233 9 9 chr12 140697727 140697950 -3088505 + MER58A DNA MER1_type 1 223 -1 489 320 62 74 chr12 140697950 140698115 -3088340 - L1M4 LINE L1 -3182 2964 2799 2219 166 57 0 chr12 140698186 140698589 -3087866 - MSTB LTR MaLR 0 426 1 4333 155 54 14 chr12 140698589 140699387 -3087068 - MSTB-int LTR MaLR 0 1651 822 223 354 48 41 chr12 140699728 140699875 -3086580 + L2 LINE L2 3165 3312 -1 883 98 15 15 chr12 140700972 140701105 -3085350 - FLAM_C SINE Alu 0 133 1 3041 164 30 2 chr12 140702571 140703103 -3083352 - MER41C LTR ERV1 -7 547 1 2823 127 43 29 chr12 140703097 140703608 -3082847 - MER4E LTR ERV1 -2 777 260 * 3608 80 14 0 chr12 140703604 140704093 -3082362 - MER41A LTR ERV1 -58 496 1 670 266 91 41 chr12 140704141 140704483 -3081972 - MLT1C LTR MaLR -39 428 70 440 236 189 5 chr12 140705084 140705296 -3081159 - MLT1J2 LTR MaLR -4 446 196 2073 141 3 7 chr12 140705560 140705866 -3080589 + AluSx SINE Alu 1 305 -7 634 275 47 0 chr12 140706926 140707097 -3079358 - MIR SINE MIR -75 187 9 2247 110 0 0 chr12 140707271 140707589 -3078866 - AluSq SINE Alu 0 318 1 429 301 110 36 chr12 140707660 140707879 -3078576 - MIR SINE MIR -7 255 21 452 295 100 32 chr12 140708677 140709046 -3077409 - L2 LINE L2 -1 3312 2919 408 187 27 0 chr12 140710021 140710096 -3076359 - MER63 DNA MER1_type -80 756 680 1414 110 18 23 chr12 140710096 140710315 -3076140 - AluSg/x SINE Alu -14 298 81 240 278 56 24 chr12 140711117 140711243 -3075212 + MIR SINE MIR 123 252 -10 948 142 0 8 chr12 140711254 140711388 -3075067 - AluSq/x SINE Alu -179 133 1 225 0 0 0 chr12 140712044 140712069 -3074386 + (T)n Simple_repeat Simple_repeat 1 25 0 606 239 60 0 chr12 140712357 140712524 -3073931 - LTR33 LTR ERVL -5 516 340 1357 227 4 1 chr12 140712602 140712939 -3073516 - LTR19A LTR ERV1 -85 401 139 1526 141 58 0 chr12 140712940 140713216 -3073239 - LTR19A LTR ERV1 -194 292 1 1143 148 11 76 chr12 140713216 140713487 -3072968 - MER4A LTR ERV1 -92 572 261 558 134 21 10 chr12 140713487 140713584 -3072871 - MER4A LTR ERV1 -566 98 1 227 271 24 12 chr12 140713587 140713672 -3072783 - L1ME LINE L1 -509 5657 5572 1249 253 64 10 chr12 140713691 140714396 -3072059 - L1ME LINE L1 -570 5596 4849 596 179 77 0 chr12 140714403 140714520 -3071935 + FLAM_C SINE Alu 7 132 -11 2858 248 37 15 chr12 140714523 140714661 -3071794 - L1ME LINE L1 -1289 4857 4724 2397 88 3 0 chr12 140714661 140714956 -3071499 - AluY SINE Alu -15 296 1 2858 248 37 15 chr12 140714956 140715763 -3070692 - L1ME LINE L1 -1422 4724 3891 335 217 113 0 chr12 140715863 140715978 -3070477 + L1MB5 LINE L1 6050 6177 -3 749 172 8 0 chr12 140715997 140716131 -3070324 - FLAM_C SINE Alu 0 143 9 615 261 33 22 chr12 140716484 140716668 -3069787 - MER20 DNA MER1_type 0 219 34 494 324 17 11 chr12 140717006 140717182 -3069273 - L1MC/D LINE L1 -2126 5682 5506 1457 283 20 34 chr12 140718217 140718481 -3067974 - L1MB5 LINE L1 0 6174 5919 2387 90 0 3 chr12 140718481 140718780 -3067675 + AluSx SINE Alu 1 298 -14 1457 283 20 34 chr12 140718780 140719021 -3067434 - L1MB5 LINE L1 -255 5919 5676 272 250 11 34 chr12 140719425 140719513 -3066942 - L2 LINE L2 -584 2730 2645 2208 122 0 0 chr12 140719650 140719953 -3066502 - AluSx SINE Alu -9 303 1 763 212 12 6 chr12 140720084 140720249 -3066206 - MER20 DNA MER1_type -52 167 2 722 301 79 11 chr12 140720276 140720645 -3065810 - L1ME1 LINE L1 -5 6161 5768 2337 91 0 3 chr12 140720769 140721066 -3065389 - AluSc SINE Alu -13 296 1 724 226 50 45 chr12 140721083 140721196 -3065259 - L1ME1 LINE L1 -394 5772 5656 908 251 41 44 chr12 140721196 140721562 -3064893 - MLT1A1 LTR MaLR 0 365 1 724 226 50 45 chr12 140721562 140721669 -3064786 - L1ME1 LINE L1 -510 5656 5551 1515 250 33 21 chr12 140722382 140722806 -3063649 + L1MB5 LINE L1 5745 6173 -1 1652 133 103 133 chr12 140723005 140723269 -3063186 - MSTA LTR MaLR 0 428 181 2252 93 3 39 chr12 140723269 140723580 -3062875 - AluSx SINE Alu -12 300 1 1652 133 103 133 chr12 140723580 140723750 -3062705 - MSTA LTR MaLR -247 181 7 256 155 52 0 chr12 140725324 140725382 -3061073 + MLT1J LTR MaLR 107 167 -344 239 220 170 30 chr12 140725414 140725514 -3060941 + MLT1J2 LTR MaLR 206 319 -131 2477 49 3 0 chr12 140725887 140726175 -3060280 + AluSp SINE Alu 10 298 -15 3954 168 39 17 chr12 140726840 140727449 -3059006 - LTR39 LTR ERV1 0 783 152 1587 132 9 0 chr12 140727449 140727676 -3058779 - AluSg/x SINE Alu -6 304 76 3954 168 39 17 chr12 140727676 140727832 -3058623 - LTR39 LTR ERV1 -631 152 1 426 233 0 0 chr12 140728367 140728625 -3057830 + GA-rich Low_complexity Low_complexity 1 258 0 250 290 76 21 chr12 140728818 140728963 -3057492 - MLT1K LTR MaLR -2 586 434 856 202 32 28 chr12 140730492 140730710 -3055745 + MER20 DNA MER1_type 1 219 0 222 349 122 4 chr12 140730749 140730978 -3055477 - L2 LINE L2 -44 3269 3014 282 220 0 0 chr12 140731098 140731148 -3055307 - MLT1L LTR MaLR -218 397 348 1963 138 48 0 chr12 140731236 140731526 -3054929 + AluSx SINE Alu 7 310 -2 218 333 12 0 chr12 140731759 140731840 -3054615 - L2 LINE L2 -313 3000 2919 920 241 132 53 chr12 140731981 140732359 -3054096 - MLT1D LTR MaLR -52 453 46 2161 121 13 29 chr12 140732558 140732939 -3053516 - THE1C LTR MaLR 0 375 1 2843 128 113 6 chr12 140733185 140733475 -3052980 + LTR18B LTR ERVL 1 258 -356 231 88 0 0 chr12 140733475 140733509 -3052946 + (GCATG)n Simple_repeat Simple_repeat 3 36 0 2843 128 113 6 chr12 140733509 140733749 -3052706 + LTR18B LTR ERVL 258 588 -26 400 320 61 28 chr12 140734191 140734438 -3052017 + MIR SINE MIR 8 262 0 228 326 11 11 chr12 140735188 140735283 -3051172 - L2 LINE L2 -5 3308 3214 232 153 68 0 chr12 140735446 140735505 -3050950 - Alu SINE Alu 0 302 240 * 380 113 0 0 chr12 140735497 140735550 -3050905 - Alu SINE Alu -255 53 1 2335 86 21 3 chr12 140735556 140735847 -3050608 - AluSq SINE Alu -17 296 1 2429 171 85 31 chr12 140735861 140736231 -3050224 - L1MC2 LINE L1 -30 6314 5903 1723 158 81 0 chr12 140736231 140736541 -3049914 - MER1B DNA MER1_type 0 337 3 2429 171 85 31 chr12 140736541 140736721 -3049734 - L1MC2 LINE L1 -441 5903 5734 266 313 27 68 chr12 140737548 140737695 -3048760 - L2 LINE L2 0 3313 3173 555 317 27 27 chr12 140738016 140738240 -3048215 - MLT1K LTR MaLR 0 588 365 406 346 6 6 chr12 140738367 140738529 -3047926 - MIR SINE MIR -41 221 60 214 356 84 55 chr12 140738553 140738935 -3047520 - L2 LINE L2 -73 3199 2807 504 298 99 0 chr12 140739369 140739540 -3046915 + MLT1I LTR MaLR 222 409 0 243 258 167 33 chr12 140739572 140739692 -3046763 - L2 LINE L2 0 3272 3137 1770 178 0 23 chr12 140740053 140740356 -3046099 + AluJb SINE Alu 1 296 -16 360 284 142 79 chr12 140740538 140740995 -3045460 - HAL1 LINE L1 -1595 912 427 198 197 33 49 chr12 140741131 140741192 -3045263 + L2 LINE L2 3213 3272 0 29 0 0 0 chr12 140741529 140741558 -3044897 + AT_rich Low_complexity Low_complexity 1 29 0 246 337 89 0 chr12 140742240 140742341 -3044114 - L2 LINE L2 -1 3312 3203 * 749 306 139 48 chr12 140742338 140743007 -3043448 - L2 LINE L2 -337 2977 2248 189 277 0 0 chr12 140743299 140743411 -3043044 + (TGG)n Simple_repeat Simple_repeat 3 114 0 414 216 0 38 chr12 140743464 140743649 -3042806 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 192 233 0 0 chr12 140743640 140743713 -3042742 + (TGG)n Simple_repeat Simple_repeat 1 73 0 * 190 246 0 33 chr12 140743805 140743927 -3042528 + (ATGGTG)n Simple_repeat Simple_repeat 4 121 0 364 220 0 34 chr12 140743939 140744116 -3042339 + (ATGGTG)n Simple_repeat Simple_repeat 4 174 0 310 257 0 0 chr12 140744119 140744189 -3042266 + (TGG)n Simple_repeat Simple_repeat 3 72 0 651 189 69 6 chr12 140745284 140745443 -3041012 + L1MA4 LINE L1 6121 6289 -11 2171 117 0 0 chr12 140745467 140745749 -3040706 + AluSg SINE Alu 6 287 -23 1412 263 52 9 chr12 140746414 140746852 -3039603 - LTR16C LTR ERVL 0 491 35 1129 90 0 0 chr12 140747077 140747232 -3039223 + L1PA8 LINE L1 6009 6163 -9 807 169 0 8 chr12 140747856 140747986 -3038469 + FLAM_C SINE Alu 1 129 -14 245 245 104 0 chr12 140748088 140748194 -3038261 - MER113 DNA MER1_type? -367 154 38 2211 117 3 0 chr12 140749621 140749920 -3036535 - AluSg SINE Alu -10 300 1 379 291 23 41 chr12 140749954 140750126 -3036329 + LTR33 LTR ERVL 1 169 -352 2785 13 10 0 chr12 140752593 140752898 -3033557 + AluY SINE Alu 1 308 -3 273 294 196 6 chr12 140753065 140753228 -3033227 + L1MDb LINE L1 8 201 -6208 1705 264 48 33 chr12 140753357 140753898 -3032557 + MLT2B3 LTR ERVL 2 550 -4 525 250 158 0 chr12 140753906 140754058 -3032397 + L1MDb LINE L1 196 371 -6038 950 153 33 143 chr12 140754060 140754360 -3032095 - L1MA8 LINE L1 -463 5837 5571 * 1779 207 49 2 chr12 140754356 140754767 -3031688 + L1MA8 LINE L1 5836 6265 -26 378 296 71 32 chr12 140754794 140755047 -3031408 + L1MDb LINE L1 384 646 -5763 2332 90 3 0 chr12 140756320 140756608 -3029847 + AluSg SINE Alu 1 289 -21 22 0 0 0 chr12 140757257 140757279 -3029176 + AT_rich Low_complexity Low_complexity 1 22 0 2093 128 6 31 chr12 140757348 140757668 -3028787 - AluSx SINE Alu 0 312 1 500 307 67 29 chr12 140757678 140758135 -3028320 - L1MC5 LINE L1 -1 8041 7504 4560 180 71 43 chr12 140758284 140758567 -3027888 - Tigger3b DNA MER2_type -1797 1231 958 2478 53 10 7 chr12 140758567 140758871 -3027584 + AluY SINE Alu 1 305 -6 4560 180 71 43 chr12 140758871 140758930 -3027525 - Tigger3b DNA MER2_type -2070 958 902 428 35 17 0 chr12 140758930 140758988 -3027467 + (TGAG)n Simple_repeat Simple_repeat 4 62 0 4560 180 71 43 chr12 140758988 140759841 -3026614 - Tigger3b DNA MER2_type -2126 902 1 296 273 122 25 chr12 140760097 140760347 -3026108 - L1ME LINE L1 -546 5624 5355 4535 168 4 3 chr12 140761109 140761882 -3024573 - MSTB-int LTR MaLR -877 774 1 2559 150 12 0 chr12 140761884 140762303 -3024152 - MSTB LTR MaLR -2 424 1 241 287 11 11 chr12 140762754 140762848 -3023607 - L1ME LINE L1 -3372 2774 2681 283 282 0 0 chr12 140762882 140762953 -3023502 + (CA)n Simple_repeat Simple_repeat 1 71 0 742 242 124 22 chr12 140763645 140763918 -3022537 - MLT1C LTR MaLR 0 467 167 1031 161 11 22 chr12 140763956 140764136 -3022319 + AluJb SINE Alu 120 297 -15 1451 198 22 15 chr12 140764137 140764410 -3022045 - AluJo SINE Alu -37 275 1 798 134 78 45 chr12 140764410 140764589 -3021866 - MLT1C LTR MaLR -282 185 1 207 222 37 0 chr12 140766149 140766230 -3020225 + CT-rich Low_complexity Low_complexity 2 85 0 781 200 29 6 chr12 140766326 140766501 -3019954 - Charlie5 DNA MER1_type -27 2585 2407 2459 64 7 0 chr12 140766503 140766798 -3019657 + AluY SINE Alu 1 297 -14 392 100 50 50 chr12 140766802 140766902 -3019553 - Charlie5 DNA MER1_type -67 2545 2446 2229 118 3 3 chr12 140766904 140767201 -3019254 + AluSx SINE Alu 1 297 -15 729 228 23 0 chr12 140767223 140767394 -3019061 - AluJb SINE Alu -14 298 124 865 106 0 0 chr12 140768148 140768271 -3018184 + FLAM_C SINE Alu 1 123 -10 503 301 61 35 chr12 140768328 140768557 -3017898 + MLT1K LTR MaLR 2 236 -352 257 164 0 36 chr12 140768898 140768953 -3017502 + MLT1K LTR MaLR 508 560 -28 390 207 31 181 chr12 140769525 140769593 -3016862 + MER5B DNA MER1_type 16 93 -85 2244 106 0 0 chr12 140769593 140769875 -3016580 + AluSc SINE Alu 9 290 -19 1925 171 0 0 chr12 140769883 140770175 -3016280 + AluJo SINE Alu 1 292 -20 390 207 31 181 chr12 140770175 140770290 -3016165 + MER5B DNA MER1_type 101 168 -10 958 280 125 42 chr12 140770726 140771230 -3015225 + L1MC4 LINE L1 5325 5870 -1938 2330 272 61 97 chr12 140771381 140772465 -3013990 + L1MC4 LINE L1 6456 7474 -568 1907 113 3 70 chr12 140772465 140772767 -3013688 + AluSx SINE Alu 15 296 -16 2330 272 61 97 chr12 140772767 140773165 -3013290 + L1MC4 LINE L1 7474 7885 -157 195 313 16 0 chr12 140773792 140773856 -3012599 + L2 LINE L2 3203 3267 -5 847 177 15 14 chr12 140773856 140774135 -3012320 + GA-rich Low_complexity Low_complexity 1 279 0 596 175 0 15 chr12 140774147 140774284 -3012171 + GA-rich Low_complexity Low_complexity 4 138 0 200 293 13 0 chr12 140774406 140774481 -3011974 + GA-rich Low_complexity Low_complexity 2 77 0 710 217 51 46 chr12 140774836 140775053 -3011402 + MER20 DNA MER1_type 2 219 0 1332 280 112 32 chr12 140775081 140775927 -3010528 - HAL1 LINE L1 -296 2211 1298 989 257 95 93 chr12 140776277 140776865 -3009590 - MER21B LTR ERV1 -148 715 127 352 258 59 75 chr12 140776979 140777165 -3009290 + LTR33 LTR ERVL 326 508 -13 755 173 7 27 chr12 140777222 140777643 -3008812 + CT-rich Low_complexity Low_complexity 1 412 0 218 197 45 0 chr12 140780411 140780477 -3005978 + (TA)n Simple_repeat Simple_repeat 1 69 0 315 278 0 52 chr12 140780603 140780700 -3005755 - L1MC4 LINE L1 -1337 6705 6614 * 333 255 9 47 chr12 140780626 140780732 -3005723 + L1MC4 LINE L1 6600 6701 -1341 223 132 57 19 chr12 140780739 140780792 -3005663 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 318 268 0 72 chr12 140780795 140780892 -3005563 + L1MC4 LINE L1 6614 6703 -1339 * 327 238 71 12 chr12 140780809 140780893 -3005562 - L1MC4 LINE L1 -1339 6703 6615 2055 104 0 21 chr12 140780897 140781186 -3005269 - AluSx SINE Alu -23 289 7 302 253 27 40 chr12 140781815 140781965 -3004490 + CT-rich Low_complexity Low_complexity 3 150 0 2128 78 11 35 chr12 140834103 140834385 -2952070 - AluSq SINE Alu -8 305 31 324 307 133 6 chr12 140834892 140835058 -2951397 - MIR SINE MIR -65 197 11 203 368 70 20 chr12 140836627 140836828 -2949627 - MIR SINE MIR -48 214 4 189 289 26 53 chr12 140837156 140837270 -2949185 + L2 LINE L2 2285 2395 -919 2417 137 19 44 chr12 140837361 140837792 -2948663 - MSTC LTR MaLR -6 422 3 257 265 129 27 chr12 140837860 140838007 -2948448 + L2 LINE L2 2594 2755 -559 339 305 115 53 chr12 140838036 140838472 -2947983 + L2 LINE L2 2845 3307 -6 3196 169 29 19 chr12 140838627 140838807 -2947648 + L1MB3 LINE L1 5484 5661 -522 2268 114 0 0 chr12 140838807 140839096 -2947359 + AluSx SINE Alu 7 295 -17 3196 169 29 19 chr12 140839096 140839601 -2946854 + L1MB3 LINE L1 5661 6176 -7 2525 55 0 0 chr12 140839623 140839913 -2946542 + AluY SINE Alu 1 290 -21 2304 104 7 0 chr12 140842175 140842472 -2943983 + AluSx SINE Alu 1 299 -13 255 222 125 34 chr12 140843127 140843303 -2943152 - LTR33 LTR ERVL -1 520 329 1032 256 219 10 chr12 140843419 140843830 -2942625 - MLT1D LTR MaLR -1 504 8 2228 136 0 0 chr12 140844029 140844331 -2942124 + AluSx SINE Alu 1 302 -10 258 283 11 11 chr12 140844956 140845048 -2941407 - LTR33 LTR ERVL -2 519 428 1823 233 64 31 chr12 140845199 140845715 -2940740 - MER68 LTR ERV1 -2 560 28 509 294 82 15 chr12 140846240 140846566 -2939889 - L2 LINE L2 -248 3024 2658 1075 259 71 68 chr12 140847349 140847974 -2938481 - MLT1K LTR MaLR 0 588 30 310 158 5 163 chr12 140848953 140849162 -2937293 + G-rich Low_complexity Low_complexity 3 178 0 246 226 20 49 chr12 140849173 140849275 -2937180 + G-rich Low_complexity Low_complexity 3 101 0 610 250 33 11 chr12 140849317 140849497 -2936958 + L1MB7 LINE L1 5982 6165 -19 395 234 38 92 chr12 140850715 140851033 -2935422 + MLT1C LTR MaLR 71 350 -40 1860 146 36 44 chr12 140851492 140851855 -2934600 - THE1B LTR MaLR -4 360 1 208 332 69 55 chr12 140851988 140852190 -2934265 + MIR SINE MIR 25 229 -33 181 437 0 0 chr12 140852282 140852369 -2934086 - L2 LINE L2 -41 3231 3145 616 217 52 139 chr12 140852742 140853124 -2933331 + MLT1C LTR MaLR 16 364 -26 2289 114 3 0 chr12 140853274 140853580 -2932875 - AluSq SINE Alu 0 313 7 190 290 75 11 chr12 140853710 140853803 -2932652 + L2 LINE L2 3151 3249 -23 297 310 35 9 chr12 140853903 140854019 -2932436 + L2 LINE L2 3134 3252 -20 225 292 89 41 chr12 140854161 140854328 -2932127 + L1MDa LINE L1 2245 2433 -4107 2357 119 0 0 chr12 140854328 140854639 -2931816 + AluSx SINE Alu 1 311 -1 225 292 89 41 chr12 140854639 140854762 -2931693 + L1MDa LINE L1 2433 2549 -3991 1811 165 3 22 chr12 140854778 140855093 -2931362 - AluJb SINE Alu -1 311 3 407 314 30 6 chr12 140855095 140855264 -2931191 - MIR SINE MIR -43 219 47 204 206 0 0 chr12 140855476 140855510 -2930945 + polypyrimidine Low_complexity Low_complexity 1 34 0 685 268 19 25 chr12 140856571 140856804 -2929651 + MIR SINE MIR 15 243 -19 2196 78 4 11 chr12 140857781 140858062 -2928393 - AluY SINE Alu 0 311 33 366 245 20 0 chr12 140858154 140858256 -2928199 - LTR33A LTR ERVL -9 514 411 477 217 197 13 chr12 140858404 140858556 -2927899 - LTR33A LTR ERVL -333 190 11 194 295 19 103 chr12 140860106 140860262 -2926193 - L2 LINE L2 -21 3292 3150 2435 139 26 2 chr12 140860290 140860706 -2925749 - MSTB LTR MaLR 0 426 1 902 317 54 62 chr12 140860710 140861562 -2924893 - L2 LINE L2 -310 3003 2159 234 160 0 100 chr12 140862666 140862716 -2923739 + L2 LINE L2 3250 3294 -19 406 270 0 0 chr12 140863039 140863139 -2923316 - MIR SINE MIR -127 135 36 234 252 52 61 chr12 140863570 140863685 -2922770 - L2 LINE L2 -315 2957 2844 503 239 80 27 chr12 140864857 140865108 -2921347 - L2 LINE L2 -280 2992 2731 1915 79 4 17 chr12 140865138 140865379 -2921076 + AluSq SINE Alu 67 304 -9 352 301 9 26 chr12 140865784 140865897 -2920558 + L2 LINE L2 3199 3309 -4 1872 173 0 7 chr12 140866348 140866654 -2919801 - AluJb SINE Alu -8 304 1 1828 160 136 0 chr12 140866910 140867284 -2919171 - MSTA LTR MaLR 0 428 4 293 222 361 10 chr12 140868878 140869072 -2917383 - LTR50 LTR ERVL 0 795 534 1765 231 109 14 chr12 140869954 140870469 -2915986 - MLT1F1 LTR MaLR 0 567 4 246 105 0 0 chr12 140870587 140870625 -2915830 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 287 92 0 chr12 140870626 140870713 -2915742 - Charlie8 DNA MER1_type -2322 95 1 261 321 67 8 chr12 140871258 140871392 -2915063 - L2 LINE L2 0 3313 3172 529 173 156 36 chr12 140871393 140871565 -2914890 - L1M3 LINE L1 -530 5650 5459 512 138 106 0 chr12 140871577 140871671 -2914784 + AluJb SINE Alu 201 304 -8 307 213 0 0 chr12 140871671 140871732 -2914723 - L1M3 LINE L1 -711 5473 5413 2258 184 77 21 chr12 140871741 140872283 -2914172 - L1MA10 LINE L1 -12 6322 5752 367 198 0 42 chr12 140872261 140872357 -2914098 - L1M3 LINE L1 -759 5425 5334 * 290 180 0 0 chr12 140872341 140872402 -2914053 + L1MB5 LINE L1 6114 6174 0 * 882 250 131 22 chr12 140872666 140873055 -2913400 - L2 LINE L2 -291 3022 2582 340 339 151 17 chr12 140873981 140874503 -2911952 + MLT1L LTR MaLR 7 598 -17 313 167 28 42 chr12 140874796 140874868 -2911587 + L1ME4a LINE L1 6049 6119 -2 563 205 115 6 chr12 140875831 140875987 -2910468 + MLT1A2 LTR MaLR 1 173 -217 363 172 16 54 chr12 140876068 140876254 -2910201 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 798 223 10 26 chr12 140876293 140876486 -2909969 + MLT1A2 LTR MaLR 174 363 -11 855 299 112 10 chr12 140876951 140877369 -2909086 + Zaphod DNA AcHobo 56 516 -3515 248 420 79 15 chr12 140877573 140877902 -2908553 - L2 LINE L2 -464 2850 2501 317 377 13 0 chr12 140878872 140879026 -2907429 - MIR SINE MIR -70 192 37 6202 87 7 11 chr12 140880668 140881671 -2904784 + L1PA10 LINE L1 5161 6159 -9 1698 199 32 7 chr12 140881871 140882276 -2904179 + L1MB5 LINE L1 5504 5864 -310 226 208 0 0 chr12 140882260 140882308 -2904147 + L1M4 LINE L1 5817 5864 -320 * 226 158 0 0 chr12 140882308 140882346 -2904109 + L1M4 LINE L1 5822 5859 -325 1765 187 20 0 chr12 140882347 140882689 -2903766 + L1MB5 LINE L1 5820 6168 -6 2046 143 47 0 chr12 140882744 140883065 -2903390 - MER1B DNA MER1_type 0 339 4 1356 297 54 10 chr12 140884227 140884745 -2901710 - L1ME3A LINE L1 0 6170 5630 3582 138 21 10 chr12 140885709 140886327 -2900128 + L1PB4 LINE L1 5350 5974 -182 2150 121 0 3 chr12 140886327 140886609 -2899846 + AluSx SINE Alu 1 281 -31 2333 105 0 0 chr12 140888110 140888415 -2898040 + AluSx SINE Alu 1 305 -7 28 0 0 0 chr12 140888445 140888473 -2897982 + AT_rich Low_complexity Low_complexity 1 28 0 281 276 177 6 chr12 140888587 140888768 -2897687 - Charlie8 DNA MER1_type -2131 286 75 348 24 0 0 chr12 140888774 140888815 -2897640 + (TG)n Simple_repeat Simple_repeat 1 41 0 580 269 51 23 chr12 140889423 140889639 -2896816 + MIR SINE MIR 40 261 -1 235 253 35 23 chr12 140890329 140890416 -2896039 + L1P4 LINE L1 5495 5582 -586 267 287 0 21 chr12 140890743 140890837 -2895618 + GA-rich Low_complexity Low_complexity 4 95 0 213 274 159 25 chr12 140892680 140892837 -2893618 + L2 LINE L2 1779 1956 -1358 374 346 58 21 chr12 140892877 140893206 -2893249 + L2 LINE L2 2080 2420 -894 331 295 42 51 chr12 140893209 140893426 -2893029 - HAL1 LINE L1 -424 2083 1869 194 182 0 0 chr12 140894053 140894086 -2892369 - L2 LINE L2 -1 3271 3239 206 250 0 0 chr12 140894772 140894816 -2891639 - MIR SINE MIR -102 160 117 276 170 0 0 chr12 140895247 140895300 -2891155 + (CAT)n Simple_repeat Simple_repeat 1 53 0 211 384 66 28 chr12 140895995 140896206 -2890249 - L2 LINE L2 0 3313 3095 433 0 0 0 chr12 140897605 140897653 -2888802 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2065 123 0 0 chr12 140897653 140897921 -2888534 - AluSg SINE Alu -1 328 14 594 215 4 0 chr12 140899057 140899334 -2887121 + (CA)n Simple_repeat Simple_repeat 1 278 0 255 193 0 0 chr12 140899407 140899490 -2886965 + (CA)n Simple_repeat Simple_repeat 1 83 0 708 198 0 0 chr12 140899523 140899775 -2886680 + (CA)n Simple_repeat Simple_repeat 1 252 0 322 305 49 0 chr12 140899775 140899857 -2886598 - L1MC4 LINE L1 -1343 6699 6614 296 174 0 14 chr12 140899858 140899927 -2886528 + (CA)n Simple_repeat Simple_repeat 1 68 0 210 211 14 42 chr12 140900028 140900099 -2886356 + GA-rich Low_complexity Low_complexity 1 69 0 289 327 6 36 chr12 140902606 140902774 -2883681 + (CATA)n Simple_repeat Simple_repeat 3 165 0 2112 119 7 0 chr12 140903713 140904008 -2882447 + AluSx SINE Alu 1 297 -15 442 295 281 3 chr12 140905125 140905467 -2880988 - MLT1L LTR MaLR -28 587 151 2956 200 54 25 chr12 140905500 140906151 -2880304 - LTR51 LTR ERV1 -1 670 1 1720 210 44 34 chr12 140906215 140906601 -2879854 - MLT1B LTR MaLR 0 390 1 214 226 85 57 chr12 140906615 140906721 -2879734 + MIR SINE MIR 154 262 0 * 282 265 19 84 chr12 140906713 140906821 -2879634 - MIR SINE MIR -61 147 46 351 198 206 103 chr12 140908816 140909069 -2877386 - MLT1K LTR MaLR -4 584 306 689 186 0 0 chr12 140910082 140910200 -2876255 + L1PA15 LINE L1 6041 6158 -7 462 331 51 6 chr12 140910464 140910642 -2875813 - MIR SINE MIR 0 262 77 628 264 56 0 chr12 140912623 140912801 -2873654 + MER5A DNA MER1_type 2 189 0 1870 126 33 17 chr12 140913167 140913396 -2873059 - MER4A LTR ERV1 -3 661 424 4030 137 45 50 chr12 140913396 140914091 -2872364 - LTR8 LTR ERV1 0 691 1 1870 126 33 17 chr12 140914091 140914162 -2872293 - MER4A LTR ERV1 -240 424 356 * 2123 151 11 23 chr12 140914144 140914564 -2871891 - MER4A LTR ERV1 -201 357 2 324 313 17 26 chr12 140915027 140915142 -2871313 - MIR SINE MIR -132 130 17 358 333 41 0 chr12 140915405 140915552 -2870903 - MIR SINE MIR -73 189 37 531 249 84 77 chr12 140915956 140916229 -2870226 + ORSL DNA AcHobo 1 275 0 191 267 0 0 chr12 140916638 140916683 -2869772 + L2 LINE L2 3219 3263 -9 181 311 0 0 chr12 140916687 140916732 -2869723 + L2 LINE L2 3219 3263 -9 3793 160 29 2 chr12 140916780 140917398 -2869057 - MER41B LTR ERV1 0 635 1 196 402 69 20 chr12 140918095 140918299 -2868156 + L2 LINE L2 3099 3312 -1 323 233 44 11 chr12 140918457 140918547 -2867908 + L2 LINE L2 3181 3273 -40 234 318 0 0 chr12 140918551 140918617 -2867838 + C-rich Low_complexity Low_complexity 1 66 0 2286 88 3 0 chr12 140919253 140919560 -2866895 + AluSq SINE Alu 1 308 -5 571 327 64 43 chr12 140919572 140919991 -2866464 + L1MD2 LINE L1 5920 6347 -12 196 361 0 0 chr12 140920425 140920486 -2865969 + L2 LINE L2 3245 3305 -8 426 301 12 12 chr12 140920920 140921093 -2865362 + (TAG)n Simple_repeat Simple_repeat 1 173 0 225 234 0 0 chr12 140921151 140921198 -2865257 + (CAG)n Simple_repeat Simple_repeat 2 48 0 468 255 0 0 chr12 140921534 140921632 -2864823 - MSTB LTR MaLR -308 118 21 1706 176 101 42 chr12 140922045 140922431 -2864024 + MSTB LTR MaLR 18 426 0 2354 206 2 15 chr12 140924134 140924599 -2861856 - MLT1C LTR MaLR -8 459 1 887 178 72 0 chr12 140924911 140925091 -2861364 + MER20 DNA MER1_type 27 219 0 334 295 13 83 chr12 140925330 140925486 -2860969 + MIR SINE MIR 26 170 -92 400 305 36 17 chr12 140925502 140925641 -2860814 - MIR SINE MIR -64 144 33 2609 185 42 23 chr12 140925820 140926388 -2860067 + L1MA7 LINE L1 5713 6291 0 534 289 16 79 chr12 140927328 140927581 -2858874 - MIR SINE MIR -1 261 25 666 268 33 12 chr12 140927724 140927928 -2858527 - MLT1C LTR MaLR -2 591 419 1681 208 56 10 chr12 140928062 140928471 -2857984 - MLT1C LTR MaLR -39 428 1 251 263 88 50 chr12 140928582 140928742 -2857713 + LTR33 LTR ERVL 23 188 -333 299 273 180 9 chr12 140928872 140929120 -2857335 - L2 LINE L2 -238 3075 2786 660 290 75 27 chr12 140929314 140929607 -2856848 - MLT1H LTR MaLR -194 355 43 2482 195 43 0 chr12 140929607 140930073 -2856382 - MER66B LTR ERV1 0 486 1 660 290 75 27 chr12 140930073 140930113 -2856342 - MLT1H LTR MaLR -506 43 6 675 262 185 3 chr12 140930118 140930442 -2856013 - L2 LINE L2 -560 2754 2372 2171 117 0 0 chr12 140931001 140931309 -2855146 - AluSg SINE Alu -2 308 1 440 65 0 0 chr12 140931487 140931549 -2854906 + L1PA15 LINE L1 6104 6165 0 874 244 146 42 chr12 140931572 140932142 -2854313 - L2 LINE L2 0 3313 2634 364 272 124 60 chr12 140932151 140932187 -2854268 - MLT1F LTR MaLR 0 542 510 2062 162 143 8 chr12 140932187 140932564 -2853891 + MSTA LTR MaLR 1 428 0 364 272 124 60 chr12 140932564 140932825 -2853630 - MLT1F LTR MaLR -32 510 226 591 200 9 0 chr12 140933197 140933302 -2853153 - AluSq/x SINE Alu -204 108 3 437 238 91 102 chr12 140933412 140933677 -2852778 + Charlie8 DNA MER1_type 4 265 -2152 1992 117 0 48 chr12 140935281 140935597 -2850858 - AluSg SINE Alu -9 301 1 5061 109 20 0 chr12 140936074 140936787 -2849668 - L1PA14 LINE L1 0 6161 5435 287 292 87 55 chr12 140937328 140937547 -2848908 + LTR33 LTR ERVL 295 520 -1 28 0 0 0 chr12 140938653 140938681 -2847774 + AT_rich Low_complexity Low_complexity 1 28 0 651 278 101 0 chr12 140938783 140938981 -2847474 + MIR SINE MIR 5 222 -40 328 273 91 14 chr12 140939043 140939186 -2847269 + MIR SINE MIR 106 259 -3 332 313 27 27 chr12 140939218 140939365 -2847090 + MIR SINE MIR 106 252 -10 496 297 119 27 chr12 140939622 140939841 -2846614 - MIR SINE MIR -19 243 5 246 306 14 0 chr12 140940132 140940204 -2846251 + MIR SINE MIR 35 107 -155 1487 186 0 0 chr12 140940216 140940468 -2845987 - AluJb SINE Alu -22 290 39 268 331 16 8 chr12 140940548 140940675 -2845780 + MIR SINE MIR 134 261 -1 2470 65 0 3 chr12 140940787 140941096 -2845359 - AluY SINE Alu -2 309 2 238 311 317 10 chr12 140942091 140942400 -2844055 + L2 LINE L2 2888 3291 -22 288 299 110 63 chr12 140943396 140943513 -2842942 + L2 LINE L2 2401 2511 -803 3250 136 27 2 chr12 140943513 140943998 -2842457 - LOR1a LTR ERV1 0 497 1 288 299 110 63 chr12 140943998 140944261 -2842194 + L2 LINE L2 2511 2799 -515 261 332 86 32 chr12 140944894 140945114 -2841341 + L2 LINE L2 2936 3167 -146 375 203 76 0 chr12 140945254 140945333 -2841122 - MER58A DNA MER1_type -11 96 12 35 54 0 0 chr12 140946130 140946186 -2840269 + AT_rich Low_complexity Low_complexity 1 56 0 267 354 15 15 chr12 140946427 140946557 -2839898 - MIR SINE MIR -74 188 59 1533 239 3 28 chr12 140946868 140947223 -2839232 - L1MD3 LINE L1 -218 7777 7432 288 189 19 0 chr12 140947244 140947297 -2839158 - MLT1F1 LTR MaLR -459 108 55 385 155 0 14 chr12 140947305 140947376 -2839079 + MER3 DNA MER1_type 136 205 -4 263 246 0 16 chr12 140947337 140947398 -2839057 - MER3 DNA MER1_type -119 90 31 * 315 245 0 143 chr12 140947862 140947929 -2838526 + MIR SINE MIR 100 175 -87 1941 135 3 37 chr12 140947929 140948225 -2838230 + AluJb SINE Alu 3 288 -24 999 133 0 0 chr12 140948225 140948390 -2838065 + (TA)n Simple_repeat Simple_repeat 2 166 0 315 245 0 143 chr12 140948390 140948468 -2837987 + MIR SINE MIR 173 225 -37 1616 163 3 64 chr12 140948487 140948800 -2837655 - AluJb SINE Alu -18 294 1 384 277 54 38 chr12 140949003 140949187 -2837268 + Charlie8 DNA MER1_type 90 276 -2141 488 145 36 0 chr12 140949462 140949545 -2836910 - L1PB4 LINE L1 -7 6149 6064 966 114 0 0 chr12 140949554 140949685 -2836770 - AluSc SINE Alu -178 131 1 183 42 0 0 chr12 140950292 140950316 -2836139 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 296 208 10 0 chr12 140951787 140951883 -2834572 + (CA)n Simple_repeat Simple_repeat 1 97 0 210 202 48 12 chr12 140952027 140952111 -2834344 + (TA)n Simple_repeat Simple_repeat 1 87 0 341 322 14 14 chr12 140953115 140953261 -2833194 + (CA)n Simple_repeat Simple_repeat 1 146 0 309 220 153 34 chr12 140953757 140953875 -2832580 - MIR SINE MIR -118 144 13 760 253 92 46 chr12 140954914 140955175 -2831280 - MER68 LTR ERV1 -267 295 23 530 173 39 83 chr12 140955714 140955870 -2830585 - L1MA9 LINE L1 0 6312 6164 1120 260 73 50 chr12 140955989 140956098 -2830357 - L1MA9 LINE L1 -111 6201 6096 2231 121 3 0 chr12 140956098 140956404 -2830051 - AluSx SINE Alu -5 307 1 1120 260 73 50 chr12 140956404 140956733 -2829722 - L1MA9 LINE L1 -216 6096 5753 349 271 54 30 chr12 140958268 140958434 -2828021 - MLT1K LTR MaLR -6 582 413 357 293 53 8 chr12 140959400 140959533 -2826922 - L2 LINE L2 -534 2780 2642 807 255 108 39 chr12 140960155 140960543 -2825912 - MLT1C LTR MaLR -6 461 47 300 336 34 7 chr12 140962639 140962785 -2823670 - L1MB7 LINE L1 -136 6048 5899 207 0 0 0 chr12 140963080 140963103 -2823352 + (TCC)n Simple_repeat Simple_repeat 1 23 0 202 288 20 75 chr12 140963282 140963428 -2823027 + L2 LINE L2 2620 2757 -557 225 301 48 39 chr12 140963685 140963790 -2822665 + MIR SINE MIR 14 120 -88 433 235 15 59 chr12 140964052 140964188 -2822267 - L2 LINE L2 -4 3309 3180 28 29 0 0 chr12 140964855 140964890 -2821565 + AT_rich Low_complexity Low_complexity 1 35 0 1697 154 19 42 chr12 140965463 140965775 -2820680 + AluSx SINE Alu 5 309 -3 872 220 83 17 chr12 140966853 140967094 -2819361 + MLT1D LTR MaLR 249 505 0 225 236 0 0 chr12 140969017 140969072 -2817383 - L1MC4 LINE L1 0 8042 7988 650 300 25 57 chr12 140969569 140970039 -2816416 + L1ME4a LINE L1 5484 5938 -183 234 236 14 56 chr12 140970640 140970712 -2815743 - L1MEd LINE L1 -5479 640 572 1724 160 7 17 chr12 140970760 140971054 -2815401 + AluSx SINE Alu 1 291 -21 21 81 0 0 chr12 140971334 140971371 -2815084 + AT_rich Low_complexity Low_complexity 1 37 0 41 58 0 0 chr12 140972280 140972349 -2814106 + AT_rich Low_complexity Low_complexity 1 69 0 323 178 164 0 chr12 140972652 140972725 -2813730 + L2 LINE L2 3229 3313 0 2343 115 0 0 chr12 140972961 140973266 -2813189 + AluSx SINE Alu 1 305 -7 245 261 14 0 chr12 140973705 140973774 -2812681 + MIR SINE MIR 45 114 -94 2528 63 0 0 chr12 140974775 140975076 -2811379 - AluY SINE Alu -10 301 1 2364 99 0 3 chr12 140977314 140977616 -2808839 + AluSc SINE Alu 1 301 -8 281 279 132 66 chr12 140977629 140977826 -2808629 + MER102b DNA MER1_type 132 341 0 180 0 0 0 chr12 140980215 140980235 -2806220 + (T)n Simple_repeat Simple_repeat 1 20 0 297 0 0 0 chr12 140982167 140982200 -2804255 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr12 140983926 140983952 -2802503 + AT_rich Low_complexity Low_complexity 1 26 0 208 311 0 0 chr12 140986038 140986112 -2800343 + (TA)n Simple_repeat Simple_repeat 2 75 0 7307 170 45 74 chr12 140986153 140987918 -2798537 - L1PA16 LINE L1 -9 6157 4522 180 0 0 0 chr12 140987918 140987938 -2798517 + (TG)n Simple_repeat Simple_repeat 1 20 0 7307 170 45 74 chr12 140987938 140989045 -2797410 - L1PA16 LINE L1 -1644 4522 3385 195 259 0 0 chr12 140990095 140990153 -2796302 + GA-rich Low_complexity Low_complexity 4 61 0 1854 139 26 0 chr12 140991849 140992115 -2794340 - AluSx SINE Alu -9 303 31 838 217 12 101 chr12 140992517 140992844 -2793611 + MER33 DNA MER1_type 5 302 -22 2208 97 0 27 chr12 140993347 140993645 -2792810 - AluSx SINE Alu -7 305 16 23 33 0 0 chr12 140994101 140994131 -2792324 + AT_rich Low_complexity Low_complexity 1 30 0 4297 258 52 16 chr12 140995533 140997364 -2789091 + L1ME1 LINE L1 4030 5947 -219 2544 52 3 7 chr12 140997364 140997674 -2788781 + AluY SINE Alu 1 309 -2 4297 258 52 16 chr12 140997674 140997900 -2788555 + L1ME1 LINE L1 5947 6163 -3 1856 164 21 0 chr12 141000068 141000354 -2786101 + AluSx SINE Alu 1 292 -20 25 31 0 0 chr12 141002048 141002080 -2784375 + AT_rich Low_complexity Low_complexity 1 32 0 1893 106 8 8 chr12 141002452 141002708 -2783747 + AluSx SINE Alu 42 297 -15 331 317 102 27 chr12 141003164 141003350 -2783105 - L1 LINE L1 -2361 3785 3586 1014 193 175 23 chr12 141005561 141005596 -2780859 - L1MB3 LINE L1 -9 6174 6146 2265 108 3 10 chr12 141005596 141005901 -2780554 + AluSx SINE Alu 1 303 -9 1014 193 175 23 chr12 141005901 141006359 -2780096 - L1MB3 LINE L1 -37 6146 5159 202 250 62 12 chr12 141006802 141006882 -2779573 - MER5B DNA MER1_type -93 85 2 32 0 0 0 chr12 141007793 141007825 -2778630 + AT_rich Low_complexity Low_complexity 1 32 0 240 263 109 51 chr12 141013205 141013361 -2773094 + L1ME LINE L1 5590 5754 -367 240 315 14 0 chr12 141016239 141016312 -2770143 + GA-rich Low_complexity Low_complexity 1 74 0 1175 280 70 19 chr12 141016364 141016778 -2769677 - LTR40a LTR ERVL -84 435 1 238 237 331 16 chr12 141017074 141017319 -2769136 + L1MC1 LINE L1 2854 3175 -2971 834 284 143 26 chr12 141017472 141018594 -2767861 + L1MC1 LINE L1 3370 4668 -1478 855 178 37 12 chr12 141018750 141018913 -2767542 + AluJo SINE Alu 127 293 -19 353 242 87 57 chr12 141018914 141019164 -2767291 + L1MC1 LINE L1 4880 5145 -1001 22 70 0 0 chr12 141022101 141022144 -2764311 + AT_rich Low_complexity Low_complexity 1 43 0 308 280 119 25 chr12 141022832 141023068 -2763387 + L1ME4a LINE L1 5695 5952 -169 4471 174 39 3 chr12 141024888 141025748 -2760707 + L1MC1 LINE L1 5221 6110 -223 1979 253 98 17 chr12 141027214 141028142 -2758313 + L1ME2 LINE L1 5157 6155 -9 186 266 16 16 chr12 141028748 141028812 -2757643 + MER5B DNA MER1_type 115 178 0 404 316 145 14 chr12 141028898 141029243 -2757212 - L2 LINE L2 -4 3309 2920 398 250 296 21 chr12 141029311 141029595 -2756860 - L2 LINE L2 -552 2762 2401 731 266 77 13 chr12 141029652 141029885 -2756570 + Charlie1 DNA MER1_type 1 248 -2513 594 171 45 0 chr12 141029864 141029975 -2756480 + Charlie1 DNA MER1_type 2638 2753 -8 * 1137 275 261 14 chr12 141029983 141030964 -2755491 - L2 LINE L2 -989 2325 1103 628 281 196 16 chr12 141030995 141031500 -2754955 - L2 LINE L2 -2670 644 49 196 290 72 51 chr12 141032462 141032600 -2753855 + MER5A DNA MER1_type 43 183 -6 576 207 7 14 chr12 141033529 141033669 -2752786 - AluSp/q SINE Alu 0 313 175 1408 75 124 0 chr12 141033879 141034080 -2752375 - AluSg/x SINE Alu 0 312 87 1715 130 110 10 chr12 141035919 141036219 -2750236 + MER2 DNA MER2_type 16 345 0 6297 82 32 16 chr12 141036578 141037621 -2748834 + L1PA10 LINE L1 5111 6168 0 1928 154 7 0 chr12 141038409 141038695 -2747760 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr12 141039118 141039146 -2747309 + AT_rich Low_complexity Low_complexity 1 28 0 194 105 26 0 chr12 141039812 141039850 -2746605 + (CATA)n Simple_repeat Simple_repeat 2 40 0 200 246 58 0 chr12 141040277 141040346 -2746109 + MIR SINE MIR 188 260 -2 2366 105 0 0 chr12 141042589 141042894 -2743561 + AluSx SINE Alu 1 305 -7 1858 116 32 0 chr12 141044142 141044427 -2742028 + L1PA13 LINE L1 5864 6157 -6 2157 112 10 0 chr12 141045859 141046153 -2740302 - AluSq SINE Alu -16 297 1 326 256 115 58 chr12 141047996 141048152 -2738303 - MIR SINE MIR -93 169 5 231 313 68 20 chr12 141049817 141049964 -2736491 - MIR SINE MIR -21 241 88 570 146 0 0 chr12 141050734 141050830 -2735625 + AluY SINE Alu 213 308 -3 2275 103 3 3 chr12 141052562 141052862 -2733593 - AluSx SINE Alu -12 300 1 183 80 0 0 chr12 141053809 141053834 -2732621 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 2061 105 29 4 chr12 141053834 141054110 -2732345 - AluSx SINE Alu -29 283 1 2226 84 30 0 chr12 141057589 141057886 -2728569 - AluSg1 SINE Alu -3 306 1 756 183 44 0 chr12 141057891 141058028 -2728427 - L1PA16 LINE L1 -2 6164 6022 1195 246 52 21 chr12 141058481 141058811 -2727644 + MER58B DNA MER1_type 1 340 -1 217 267 0 118 chr12 141062500 141062580 -2723875 + L2 LINE L2 2674 2733 -581 2460 68 0 7 chr12 141062580 141062888 -2723567 + AluY SINE Alu 1 306 -5 217 267 0 118 chr12 141062888 141062942 -2723513 + L2 LINE L2 2733 2792 -522 26 50 0 0 chr12 141063617 141063657 -2722798 + AT_rich Low_complexity Low_complexity 1 40 0 377 133 13 0 chr12 141064276 141064351 -2722104 + (CA)n Simple_repeat Simple_repeat 2 77 0 180 0 0 0 chr12 141065826 141065846 -2720609 + (CCA)n Simple_repeat Simple_repeat 1 20 0 1634 155 24 10 chr12 141065857 141066153 -2720302 + MER1B DNA MER1_type 40 339 0 265 238 5 78 chr12 141067512 141067705 -2718750 + C-rich Low_complexity Low_complexity 2 180 0 353 276 5 38 chr12 141067740 141067925 -2718530 + C-rich Low_complexity Low_complexity 1 179 0 318 303 0 32 chr12 141067950 141068135 -2718320 + C-rich Low_complexity Low_complexity 1 179 0 255 192 8 85 chr12 141068160 141068290 -2718165 + C-rich Low_complexity Low_complexity 6 125 0 200 257 14 43 chr12 141068661 141068801 -2717654 + (CCCCG)n Simple_repeat Simple_repeat 5 140 0 344 196 0 93 chr12 141068839 141069033 -2717422 + (CCCCG)n Simple_repeat Simple_repeat 5 180 0 743 129 173 0 chr12 141069798 141069937 -2716518 - FRAM SINE Alu 0 166 4 1642 110 15 128 chr12 141069950 141070286 -2716169 - AluJb SINE Alu -4 298 1 1835 191 83 8 chr12 141071773 141072172 -2714283 - L1MB5 LINE L1 0 6174 5746 407 208 10 10 chr12 141073080 141073181 -2713274 + MER5A DNA MER1_type 33 133 -56 805 184 101 28 chr12 141073761 141073940 -2712515 - AluJo SINE Alu -21 291 100 1998 196 50 14 chr12 141073966 141074467 -2711988 + L1MB3 LINE L1 5662 6180 -3 349 263 76 23 chr12 141074861 141075032 -2711423 + MER5A DNA MER1_type 10 189 0 441 299 89 43 chr12 141075293 141075685 -2710770 + Charlie7 DNA MER1_type 107 516 -2096 296 298 42 37 chr12 141075782 141075973 -2710482 + Charlie7 DNA MER1_type 2420 2611 -1 515 208 8 17 chr12 141076697 141076817 -2709638 - L1MA4 LINE L1 -3 6297 6179 306 253 127 89 chr12 141076902 141077139 -2709316 + MLT1L LTR MaLR 144 389 -226 246 274 14 0 chr12 141077154 141077227 -2709228 + MLT1L LTR MaLR 538 611 -4 192 330 84 28 chr12 141077232 141077411 -2709044 - MER5A DNA MER1_type 0 189 1 305 333 90 22 chr12 141079113 141079380 -2707075 - L1MB5 LINE L1 -359 5762 5478 271 318 137 25 chr12 141079427 141080214 -2706241 + L1M4 LINE L1 4502 5376 -770 2020 134 0 0 chr12 141080216 141080493 -2705962 - AluSx SINE Alu -35 277 1 839 236 98 14 chr12 141080545 141080821 -2705634 + HAL1 LINE L1 1416 1714 -793 299 297 0 0 chr12 141080940 141081014 -2705441 - MLT1L LTR MaLR -366 249 176 264 321 33 23 chr12 141081184 141081399 -2705056 - L1MB5 LINE L1 -1302 4844 4628 243 213 50 25 chr12 141081466 141081546 -2704909 + MIR SINE MIR 74 155 -107 7369 221 50 9 chr12 141081548 141084250 -2702205 + L1MB8 LINE L1 3382 6178 0 214 296 0 0 chr12 141084699 141084753 -2701702 + L2 LINE L2 2920 2973 -340 302 316 88 26 chr12 141084884 141085099 -2701356 - MIR SINE MIR -1 261 23 367 289 61 17 chr12 141085797 141085977 -2700478 + L1ME4a LINE L1 5731 5918 -203 291 237 0 0 chr12 141085992 141086085 -2700370 + C-rich Low_complexity Low_complexity 3 95 0 309 51 0 0 chr12 141086168 141086207 -2700248 + (TG)n Simple_repeat Simple_repeat 1 39 0 2018 138 0 45 chr12 141087404 141087569 -2698886 - AluJb SINE Alu -14 298 152 2008 136 18 0 chr12 141087569 141087855 -2698600 - AluSg SINE Alu -19 291 1 2018 138 0 45 chr12 141087855 141088001 -2698454 - AluJb SINE Alu -160 152 1 270 0 0 0 chr12 141088149 141088179 -2698276 + (TG)n Simple_repeat Simple_repeat 1 30 0 416 327 24 6 chr12 141089284 141089449 -2697006 - MIR SINE MIR -50 212 45 554 119 24 0 chr12 141090878 141090962 -2695493 + THE1B LTR MaLR 53 138 -226 545 273 130 31 chr12 141091083 141091376 -2695079 - MER5C DNA MER1_type 0 324 3 2428 124 5 24 chr12 141091555 141091926 -2694529 + THE1B LTR MaLR 1 364 0 946 111 11 22 chr12 141092100 141092281 -2694174 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2041 111 37 0 chr12 141092284 141092555 -2693900 - AluSq SINE Alu -32 281 1 2514 153 102 5 chr12 141092652 141093095 -2693360 - MER66B LTR ERV1 0 486 1 181 323 123 13 chr12 141093126 141093281 -2693174 + MIR SINE MIR 85 256 -6 230 311 30 52 chr12 141093383 141093518 -2692937 - LTR33 LTR ERVL -56 465 334 21 0 0 0 chr12 141093598 141093619 -2692836 + GC_rich Low_complexity Low_complexity 1 21 0 461 215 63 63 chr12 141093839 141093941 -2692514 - MIR SINE MIR 0 262 158 1779 212 97 2 chr12 141093941 141094365 -2692090 + MLT1C LTR MaLR 4 467 0 461 215 63 63 chr12 141094365 141094420 -2692035 - MIR SINE MIR -103 159 105 590 302 55 13 chr12 141094653 141094961 -2691494 + L1ME4a LINE L1 3611 3931 -2215 389 258 53 0 chr12 141095721 141095853 -2690602 + LTR41 LTR ERVL 629 767 -6 180 0 0 0 chr12 141095979 141095999 -2690456 + (TG)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr12 141096175 141096196 -2690259 + AT_rich Low_complexity Low_complexity 1 21 0 246 245 43 21 chr12 141096493 141096587 -2689868 + L1ME4a LINE L1 5254 5349 -985 1587 191 3 14 chr12 141096708 141097015 -2689440 + AluJb SINE Alu 6 309 0 621 340 19 19 chr12 141097017 141097391 -2689064 + L1ME4a LINE L1 5532 5905 -216 501 330 60 24 chr12 141098120 141098538 -2687917 - LTR33 LTR ERVL -3 518 86 1257 226 95 33 chr12 141098544 141098974 -2687481 + MLT1C LTR MaLR 9 465 -2 3375 204 43 51 chr12 141099284 141100016 -2686439 + L1MB7 LINE L1 4659 5395 -789 2667 61 0 0 chr12 141100016 141100327 -2686128 + AluY SINE Alu 1 311 0 3375 204 43 51 chr12 141100327 141100915 -2685540 + L1MB7 LINE L1 5395 5960 -224 1468 183 33 18 chr12 141100915 141101189 -2685266 + AluJo SINE Alu 21 298 -14 3375 204 43 51 chr12 141101189 141101412 -2685043 + L1MB7 LINE L1 5960 6183 -1 814 89 0 36 chr12 141101831 141101943 -2684512 + AluSg/x SINE Alu 186 293 -17 21 0 0 0 chr12 141102113 141102134 -2684321 + AT_rich Low_complexity Low_complexity 1 21 0 428 248 32 8 chr12 141102585 141102710 -2683745 + MER94 DNA DNA 3 130 -4 210 105 0 0 chr12 141102961 141102999 -2683456 + (TC)n Simple_repeat Simple_repeat 2 39 0 223 324 98 5 chr12 141102999 141103203 -2683252 + L2 LINE L2 2034 2256 -1058 242 305 32 0 chr12 141103297 141103392 -2683063 + L2 LINE L2 2524 2621 -693 256 288 8 42 chr12 141103426 141103544 -2682911 + L2 LINE L2 2724 2837 -477 1080 232 164 2 chr12 141103783 141104179 -2682276 - MLT1C LTR MaLR -7 460 1 416 244 91 45 chr12 141104319 141104680 -2681775 - L2 LINE L2 -209 3104 2725 506 226 50 31 chr12 141105615 141105774 -2680681 - MER112 DNA MER1_type -20 240 79 618 146 0 0 chr12 141105774 141105884 -2680571 + (CA)n Simple_repeat Simple_repeat 2 111 0 309 154 0 0 chr12 141105884 141105936 -2680519 - MER4-int LTR ERV1 -5435 1163 1112 612 232 0 0 chr12 141105969 141106146 -2680309 + (CA)n Simple_repeat Simple_repeat 2 178 0 673 188 0 32 chr12 141106164 141106350 -2680105 + (CA)n Simple_repeat Simple_repeat 1 180 0 1350 285 160 17 chr12 141107206 141107795 -2678660 + HsTC2c DNA Tc2 1 673 -56 731 234 209 9 chr12 141107801 141108078 -2678377 - MLT1G1 LTR MaLR -44 538 215 2360 119 12 0 chr12 141108148 141108483 -2677972 + L1PA15 LINE L1 5823 6161 -4 2611 218 38 12 chr12 141108499 141109078 -2677377 - L1MB7 LINE L1 0 6184 5591 4724 213 44 14 chr12 141109079 141111011 -2675444 - L1PA12 LINE L1 0 6168 4165 254 183 18 0 chr12 141111089 141111152 -2675303 + HsTC2 DNA Tc2 1835 1898 0 415 326 14 7 chr12 141111205 141111349 -2675106 - MIR SINE MIR -97 165 21 2134 96 4 4 chr12 141111765 141112079 -2674376 - AluY SINE Alu 0 314 1 1609 151 12 98 chr12 141112127 141112452 -2674003 + AluJo SINE Alu 1 297 -15 301 266 151 75 chr12 141112716 141112968 -2673487 - MLT1J LTR MaLR -1 510 240 206 395 125 0 chr12 141113264 141113416 -2673039 + L2 LINE L2 2853 3023 -290 701 232 184 41 chr12 141113416 141114030 -2672425 + LTR50 LTR ERVL 3 795 0 245 289 124 8 chr12 141114030 141114151 -2672304 + L2 LINE L2 3017 3151 -162 241 139 0 139 chr12 141114176 141114262 -2672193 - MLT1B LTR MaLR -34 356 283 21 0 0 0 chr12 141114676 141114697 -2671758 + AT_rich Low_complexity Low_complexity 1 21 0 1458 216 3 16 chr12 141114872 141115178 -2671277 - MLT1A2 LTR MaLR -32 342 41 21 0 0 0 chr12 141115249 141115270 -2671185 + AT_rich Low_complexity Low_complexity 1 21 0 469 149 0 0 chr12 141115788 141115862 -2670593 - LTR67 LTR ERVL -2 555 482 1042 151 96 9 chr12 141115886 141116104 -2670351 + L1MB3 LINE L1 5945 6181 -2 294 304 95 14 chr12 141116247 141116395 -2670060 - LTR67 LTR ERVL -275 282 123 939 266 105 29 chr12 141116486 141116866 -2669589 + MLT1I LTR MaLR 1 409 0 248 235 176 20 chr12 141117642 141117744 -2668711 - MIR SINE MIR -118 144 27 430 209 187 7 chr12 141118084 141118223 -2668232 + MIR SINE MIR 34 197 -65 21 0 0 0 chr12 141118461 141118482 -2667973 + AT_rich Low_complexity Low_complexity 1 21 0 225 191 32 16 chr12 141119167 141119230 -2667225 + (TA)n Simple_repeat Simple_repeat 1 64 0 365 0 0 22 chr12 141119677 141119723 -2666732 + (CA)n Simple_repeat Simple_repeat 1 45 0 2132 73 0 15 chr12 141121260 141121521 -2664934 - AluSq SINE Alu -56 257 1 245 329 0 0 chr12 141121521 141121600 -2664855 - L1ME3 LINE L1 -32 6130 6052 1273 135 6 0 chr12 141121605 141121783 -2664672 + MER1B DNA MER1_type 1 179 -118 832 158 38 66 chr12 141121788 141121971 -2664484 - MER20 DNA MER1_type -41 178 1 718 136 24 40 chr12 141122070 141122195 -2664260 + MER1B DNA MER1_type 204 326 -13 426 292 143 0 chr12 141122202 141122411 -2664044 - L1ME3 LINE L1 -108 6054 5816 1624 163 27 114 chr12 141122489 141122900 -2663555 - THE1C LTR MaLR 0 375 1 659 204 35 100 chr12 141123110 141123341 -2663114 + MER20 DNA MER1_type 1 216 -3 216 250 0 0 chr12 141123537 141123581 -2662874 - MER5A DNA MER1_type 0 189 146 218 282 51 97 chr12 141123921 141123993 -2662462 + L2 LINE L2 3080 3154 -159 2239 106 0 13 chr12 141123993 141124304 -2662151 - AluSx SINE Alu -5 307 1 218 282 51 97 chr12 141124304 141124426 -2662029 + L2 LINE L2 3154 3265 -48 28 0 0 0 chr12 141126383 141126411 -2660044 + AT_rich Low_complexity Low_complexity 1 28 0 2155 118 9 19 chr12 141127119 141127434 -2659021 - AluSx SINE Alu 0 312 1 2358 114 0 0 chr12 141127875 141128181 -2658274 + AluSx SINE Alu 1 306 -6 852 139 22 0 chr12 141128283 141128420 -2658035 - L1PB1 LINE L1 -3 6148 6009 2762 122 6 53 chr12 141128786 141129260 -2657195 - L1PA13 LINE L1 0 6163 5712 304 276 154 33 chr12 141129530 141129744 -2656711 - MIR SINE MIR -12 250 11 186 227 102 45 chr12 141131262 141131350 -2655105 - MIR SINE MIR -38 224 132 3057 215 38 33 chr12 141131505 141132164 -2654291 + L1MC1 LINE L1 4490 5157 -1124 2045 136 3 0 chr12 141132164 141132451 -2654004 + AluSx SINE Alu 1 288 -24 3057 215 38 33 chr12 141132451 141132835 -2653620 + L1MC1 LINE L1 5157 5538 -743 3846 163 45 9 chr12 141132859 141133533 -2652922 + L1MC1 LINE L1 5630 6327 -6 704 192 19 6 chr12 141133562 141133873 -2652582 + GA-rich Low_complexity Low_complexity 1 315 0 289 293 107 36 chr12 141134880 141135020 -2651435 + MIR SINE MIR 64 213 -49 2368 139 23 120 chr12 141135086 141135611 -2650844 + MER101 LTR ERV1 1 474 0 292 310 106 29 chr12 141135677 141135951 -2650504 + MLT1J2 LTR MaLR 115 409 -41 2132 107 37 3 chr12 141136116 141136416 -2650039 + AluSx SINE Alu 1 310 -2 180 0 0 0 chr12 141136540 141136560 -2649895 + (T)n Simple_repeat Simple_repeat 1 20 0 206 211 0 0 chr12 141136677 141136715 -2649740 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 284 70 23 0 chr12 141136835 141136878 -2649577 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr12 141137150 141137171 -2649284 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr12 141138132 141138159 -2648296 + (A)n Simple_repeat Simple_repeat 1 27 0 963 208 24 0 chr12 141138502 141138709 -2647746 - MER20 DNA MER1_type -6 213 2 1082 88 21 42 chr12 141139504 141139696 -2646759 + L1MA4A LINE L1 5855 6042 -261 1372 191 18 0 chr12 141139776 141140049 -2646406 + L1MA4A LINE L1 6021 6298 -5 261 0 0 0 chr12 141140383 141140412 -2646043 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2055 158 28 8 chr12 141140441 141140803 -2645652 - L1PA16 LINE L1 -9 6157 5789 1982 132 4 0 chr12 141141784 141142108 -2644347 + AluSx SINE Alu 1 325 0 250 311 30 23 chr12 141142138 141142270 -2644185 - MIR SINE MIR -24 238 106 517 271 45 96 chr12 141142364 141142718 -2643737 + L3 LINE CR1 934 1269 -308 395 320 22 11 chr12 141142827 141143005 -2643450 - MIR SINE MIR -45 217 38 488 342 57 9 chr12 141143038 141143266 -2643189 + L3 LINE CR1 1337 1575 -2 250 358 128 15 chr12 141143572 141143963 -2642492 + L2 LINE L2 1687 2121 -1193 197 353 139 0 chr12 141144110 141144311 -2642144 + L2 LINE L2 2182 2410 -904 189 363 45 75 chr12 141144529 141144730 -2641725 + L2 LINE L2 2865 3059 -213 224 222 0 0 chr12 141144876 141144921 -2641534 + L2 LINE L2 3224 3268 -4 1900 115 43 43 chr12 141146212 141146517 -2639938 + AluSx SINE Alu 1 305 -7 1498 270 86 21 chr12 141147286 141147983 -2638472 - L2 LINE L2 -340 2974 2233 207 235 0 112 chr12 141147983 141148081 -2638374 - L2 LINE L2 -1037 2277 2191 290 313 72 48 chr12 141148188 141148396 -2638059 + MLT1I LTR MaLR 191 403 -6 1757 161 4 11 chr12 141148575 141148855 -2637600 + AluJo SINE Alu 6 283 -29 373 140 0 0 chr12 141148855 141148912 -2637543 + AluJ/FRAM SINE Alu 225 281 -21 417 131 0 0 chr12 141148912 141148973 -2637482 + AluJ/FRAM SINE Alu 223 283 -29 * 463 134 0 0 chr12 141148971 141149038 -2637417 + AluJ/FRAM SINE Alu 223 289 -23 241 246 0 0 chr12 141149194 141149263 -2637192 + (TA)n Simple_repeat Simple_repeat 1 69 0 184 305 92 8 chr12 141149701 141149832 -2636623 - MIR SINE MIR -70 192 51 4996 148 77 66 chr12 141149929 141151446 -2635009 + pTR5 LTR ERV1 75 2438 0 1233 189 132 23 chr12 141151624 141151889 -2634566 + AluJo SINE Alu 2 295 -7 410 314 150 33 chr12 141153267 141153694 -2632761 + L2 LINE L2 2357 2833 -481 1088 212 136 64 chr12 141155965 141156371 -2630084 - MER63B DNA MER1_type -1 435 1 301 309 124 0 chr12 141156489 141156586 -2629869 - L2 LINE L2 -18 3295 3187 182 305 34 0 chr12 141156617 141156676 -2629779 - L2 LINE L2 -220 3093 3033 352 238 82 87 chr12 141156679 141156885 -2629570 + L2 LINE L2 3108 3312 -1 306 277 49 49 chr12 141157080 141157197 -2629258 - L1MEd LINE L1 -5042 1077 958 1634 180 53 117 chr12 141157197 141157708 -2628747 - MER66A LTR ERV1 0 478 1 306 277 49 49 chr12 141157708 141157774 -2628681 - L1MEd LINE L1 -5160 959 894 277 229 12 60 chr12 141157846 141157929 -2628526 - L1MEc LINE L1 -2328 3887 3809 350 296 61 76 chr12 141158017 141158281 -2628174 - L1MEc LINE L1 -3941 2455 2196 27 29 0 0 chr12 141158673 141158707 -2627748 + AT_rich Low_complexity Low_complexity 1 34 0 206 405 0 23 chr12 141158874 141159005 -2627450 - MIR3 SINE MIR -66 142 15 219 218 0 0 chr12 141159027 141159082 -2627373 + CT-rich Low_complexity Low_complexity 3 57 0 189 214 0 0 chr12 141159084 141159126 -2627329 + (CAT)n Simple_repeat Simple_repeat 1 42 0 978 118 22 11 chr12 141159129 141159307 -2627148 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 940 146 11 0 chr12 141159307 141159485 -2626970 + (CAT)n Simple_repeat Simple_repeat 1 180 0 340 313 62 8 chr12 141159616 141159744 -2626711 + L2 LINE L2 3179 3313 0 1048 205 5 0 chr12 141160678 141160873 -2625582 - L1MC4a LINE L1 -530 7278 7083 498 332 15 10 chr12 141161320 141161519 -2624936 + MIR SINE MIR 59 258 -4 191 282 73 55 chr12 141162215 141162325 -2624130 + MIR SINE MIR 39 150 -112 1374 243 70 5 chr12 141162376 141162750 -2623705 + MLT1C LTR MaLR 63 460 -7 241 312 119 46 chr12 141162858 141163076 -2623379 + MIR SINE MIR 29 262 0 583 326 101 19 chr12 141164010 141164660 -2621795 - L2 LINE L2 0 3313 2622 350 117 58 19 chr12 141165028 141165131 -2621324 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 733 103 22 49 chr12 141165143 141165327 -2621128 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 526 121 43 0 chr12 141165352 141165468 -2620987 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 349 248 133 19 chr12 141165562 141165667 -2620788 - MLT1D LTR MaLR -2 503 387 604 346 43 9 chr12 141165674 141166137 -2620318 + L2 LINE L2 1852 2330 -984 205 342 35 9 chr12 141166161 141166275 -2620180 - L2 LINE L2 -1486 1828 1712 2692 91 37 5 chr12 141166287 141166670 -2619785 - L1PA15 LINE L1 -2 6163 5769 612 138 18 9 chr12 141166706 141166815 -2619640 - L1PB2 LINE L1 0 6151 6042 3062 104 7 2 chr12 141166817 141167258 -2619197 - L1PA15 LINE L1 -387 5778 5336 2714 183 48 11 chr12 141167248 141167816 -2618639 - L1MC3 LINE L1 -292 7493 6905 * 5642 202 16 32 chr12 141167813 141169216 -2617239 - L1MC3 LINE L1 -743 5403 5146 1024 151 110 0 chr12 141169217 141169436 -2617019 - L1P LINE L1 -796 5350 5108 388 239 67 0 chr12 141169436 141169570 -2616885 - L2 LINE L2 -1632 1682 1540 395 38 19 0 chr12 141171145 141171198 -2615257 + (CA)n Simple_repeat Simple_repeat 1 54 0 207 0 0 0 chr12 141171197 141171220 -2615235 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 323 243 146 56 chr12 141172714 141172777 -2613678 - MIR SINE MIR -31 231 175 1485 164 0 19 chr12 141172777 141173040 -2613415 + AluJb SINE Alu 48 305 -7 323 243 146 56 chr12 141173040 141173120 -2613335 - MIR SINE MIR -87 175 75 247 255 10 10 chr12 141173551 141173653 -2612802 + (CA)n Simple_repeat Simple_repeat 2 103 0 305 303 84 58 chr12 141173920 141174075 -2612380 - L1ME3A LINE L1 -18 6152 5994 1119 233 79 110 chr12 141174199 141174806 -2611649 - L1MC5 LINE L1 -435 7526 6902 2175 149 29 66 chr12 141174806 141175047 -2611408 - MSTB LTR MaLR 0 426 207 1552 188 24 3 chr12 141175047 141175339 -2611116 - AluJo SINE Alu -14 298 1 2175 149 29 66 chr12 141175339 141175539 -2610916 - MSTB LTR MaLR -219 207 1 1119 233 79 110 chr12 141175539 141175689 -2610766 - L1MC5 LINE L1 -1059 6902 6749 234 0 0 0 chr12 141175689 141175715 -2610740 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 1119 233 79 110 chr12 141175715 141175971 -2610484 - L1MC5 LINE L1 -1212 6749 6560 783 346 119 32 chr12 141176383 141176972 -2609483 - HAL1b LINE L1 -703 645 6 2106 148 13 42 chr12 141177338 141177722 -2608733 + THE1C LTR MaLR 3 375 0 216 226 226 24 chr12 141178420 141178588 -2607867 - L2 LINE L2 -1323 1991 1790 2447 167 12 5 chr12 141178614 141179022 -2607433 + LOR1b LTR ERV1 51 461 0 312 271 5 0 chr12 141182671 141182897 -2603558 + (CA)n Simple_repeat Simple_repeat 1 227 0 417 241 0 0 chr12 141182920 141183090 -2603365 + (CA)n Simple_repeat Simple_repeat 1 170 0 594 276 3 0 chr12 141183118 141183414 -2603041 + (CA)n Simple_repeat Simple_repeat 1 297 0 1827 195 34 5 chr12 141184606 141184985 -2601470 + MLT1B LTR MaLR 1 390 0 2539 161 40 2 chr12 141185912 141186391 -2600064 + L1MC1 LINE L1 5836 6332 -1 2383 166 102 5 chr12 141186850 141187289 -2599166 - MER66B LTR ERV1 -4 482 1 249 323 123 13 chr12 141187320 141187475 -2598980 + MIR SINE MIR 85 256 -6 243 311 30 52 chr12 141187577 141187712 -2598743 - LTR33 LTR ERVL -56 465 334 21 0 0 0 chr12 141187792 141187813 -2598642 + GC_rich Low_complexity Low_complexity 1 21 0 451 289 21 14 chr12 141187826 141188258 -2598197 + CT-rich Low_complexity Low_complexity 1 435 0 1664 71 0 0 chr12 141188386 141188598 -2597857 - L1PA8 LINE L1 -276 5896 5685 2002 66 0 0 chr12 141188598 141188842 -2597613 + L1PA8 LINE L1 5431 5674 -498 1425 214 7 0 chr12 141188868 141189177 -2597278 - AluJb SINE Alu 0 311 1 1700 220 62 87 chr12 141189178 141190029 -2596426 - L1MC5 LINE L1 -44 7917 7088 775 279 28 64 chr12 141190235 141190625 -2595830 + MLT1J LTR MaLR 86 461 -50 205 161 0 0 chr12 141191728 141191759 -2594696 - MIR SINE MIR -113 149 119 204 67 0 0 chr12 141192669 141192699 -2593756 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 336 228 134 47 chr12 141192731 141192880 -2593575 + L2 LINE L2 3146 3307 -6 255 290 181 23 chr12 141193165 141193463 -2592992 - L2 LINE L2 -234 3079 2739 2082 123 0 3 chr12 141193464 141193764 -2592691 - AluSx SINE Alu -13 299 1 416 221 37 44 chr12 141194300 141194436 -2592019 - L2 LINE L2 -614 2700 2566 448 319 69 22 chr12 141194533 141194853 -2591602 - L2 LINE L2 -998 2316 1982 954 199 39 13 chr12 141194901 141194985 -2591470 + L1MA4A LINE L1 6038 6118 -185 4674 48 12 0 chr12 141194985 141195552 -2590903 - L1PA5 LINE L1 0 6154 5581 954 181 11 16 chr12 141195552 141195738 -2590717 + L1MA4A LINE L1 6111 6297 -6 954 199 39 13 chr12 141195738 141195761 -2590694 + L1MA4A LINE L1 6117 6297 -6 293 303 71 60 chr12 141196795 141197082 -2589373 + L2 LINE L2 2797 3087 -226 1235 131 77 5 chr12 141197770 141197991 -2588464 - L1MC1 LINE L1 -1 6332 6096 712 266 117 21 chr12 141198534 141199014 -2587441 - L2 LINE L2 -299 3014 2490 324 314 149 11 chr12 141199400 141199588 -2586867 + L1MC4a LINE L1 5009 5222 -924 542 309 92 26 chr12 141199615 141200173 -2586282 + L1MC4a LINE L1 5284 5636 -485 2186 123 7 0 chr12 141200741 141201043 -2585412 + AluSx SINE Alu 1 304 -8 288 183 110 0 chr12 141201320 141201402 -2585053 + L1ME4a LINE L1 5981 6071 -50 656 265 54 0 chr12 141201808 141201974 -2584481 - MER5A DNA MER1_type 0 189 15 232 178 0 0 chr12 141203578 141203623 -2582832 + LTR67 LTR ERVL 513 557 0 480 300 85 15 chr12 141205214 141205414 -2581041 - MIR SINE MIR -32 230 17 1083 233 96 52 chr12 141205442 141205880 -2580575 - MLT1C LTR MaLR 0 467 11 1929 219 39 21 chr12 141206368 141206888 -2579567 + L1MB8 LINE L1 5649 6177 -1 3017 205 25 3 chr12 141206898 141207528 -2578927 + L1MB5 LINE L1 5523 6166 -8 979 213 65 54 chr12 141207883 141208235 -2578220 + MLT1A2 LTR MaLR 19 374 0 258 266 102 70 chr12 141208246 141208285 -2578170 - LTR33 LTR ERVL -53 468 432 3116 62 69 14 chr12 141208285 141208706 -2577749 + MLT2A1 LTR ERVL 1 444 0 258 266 102 70 chr12 141208706 141209109 -2577346 - LTR33 LTR ERVL -89 432 12 2422 60 0 27 chr12 141209694 141209994 -2576461 - AluSg SINE Alu -18 292 1 281 259 24 12 chr12 141211219 141211304 -2575151 + MLT1G LTR MaLR 40 125 -465 951 161 138 6 chr12 141211304 141211478 -2574977 + AluJb SINE Alu 25 221 -91 1739 171 33 3 chr12 141211478 141211777 -2574678 + AluJo SINE Alu 2 309 -3 813 92 0 0 chr12 141211880 141211989 -2574466 + L1PA8 LINE L1 6062 6170 -2 22 0 0 0 chr12 141211995 141212017 -2574438 + AT_rich Low_complexity Low_complexity 1 22 0 325 284 107 71 chr12 141212406 141212631 -2573824 + HAL1 LINE L1 2259 2491 -16 453 306 125 72 chr12 141212644 141213171 -2573284 + L1MC4a LINE L1 2906 3460 -2686 334 310 113 7 chr12 141213509 141213651 -2572804 - MER5A DNA MER1_type -5 184 28 228 246 15 15 chr12 141213663 141213728 -2572727 + MER103 DNA DNA 92 156 -10 625 319 135 64 chr12 141213784 141213971 -2572484 + L1MC4a LINE L1 3682 3854 -2292 1924 224 105 10 chr12 141213971 141214466 -2571989 - MLT1F LTR MaLR 0 542 1 625 319 135 64 chr12 141214466 141214938 -2571517 + L1MC4a LINE L1 3854 4377 -1769 383 318 7 32 chr12 141215213 141215367 -2571088 + L1MC4a LINE L1 5791 5940 -1868 2461 103 43 0 chr12 141215561 141215910 -2570545 - THE1B LTR MaLR 0 364 1 260 225 42 14 chr12 141216113 141216184 -2570271 + MIR3 SINE MIR 106 178 -30 402 283 137 26 chr12 141216325 141216551 -2569904 - MLT1K LTR MaLR -180 408 158 633 220 12 17 chr12 141216659 141216832 -2569623 + L1M4 LINE L1 5142 5313 -833 238 342 26 8 chr12 141217642 141217759 -2568696 + MLT1K LTR MaLR 186 304 -284 324 167 0 19 chr12 141218402 141218456 -2567999 - MER5B DNA MER1_type -66 112 60 259 175 16 32 chr12 141218462 141218525 -2567930 - MLT1D LTR MaLR 0 505 444 2218 129 0 0 chr12 141218527 141218830 -2567625 + AluSq SINE Alu 1 303 -10 1003 243 99 36 chr12 141218860 141219275 -2567180 - MLT1D LTR MaLR -52 453 13 883 198 79 14 chr12 141220398 141220798 -2565657 + MLT1C LTR MaLR 6 461 -6 278 303 48 36 chr12 141220818 141220983 -2565472 + L2 LINE L2 665 831 -2483 608 273 65 60 chr12 141221270 141221669 -2564786 + HsTC2 DNA Tc2 1324 1900 0 1345 303 64 15 chr12 141221811 141222677 -2563778 + L2 LINE L2 2247 3156 -157 513 280 39 6 chr12 141222767 141222949 -2563506 + MER5A DNA MER1_type 1 188 -1 273 266 133 23 chr12 141222981 141223109 -2563346 + L2 LINE L2 3169 3310 -3 508 296 12 37 chr12 141224134 141224377 -2562078 + L1MB3 LINE L1 5940 6176 -7 521 286 39 6 chr12 141224512 141224694 -2561761 + MER5A DNA MER1_type 1 188 -1 26 30 0 0 chr12 141225064 141225097 -2561358 + AT_rich Low_complexity Low_complexity 1 33 0 354 263 0 0 chr12 141225446 141225541 -2560914 + (CA)n Simple_repeat Simple_repeat 1 95 0 426 244 0 0 chr12 141225552 141225708 -2560747 + (CA)n Simple_repeat Simple_repeat 2 157 0 252 265 0 0 chr12 141225766 141225913 -2560542 + (CA)n Simple_repeat Simple_repeat 2 148 0 328 361 26 37 chr12 141226346 141226537 -2559918 - L1MC4 LINE L1 -169 7873 7685 351 311 148 11 chr12 141226796 141226979 -2559476 - L1MC4a LINE L1 -1902 5906 5699 1880 166 35 0 chr12 141227374 141227664 -2558791 + AluJb SINE Alu 1 300 -12 2213 129 7 0 chr12 141228112 141228422 -2558033 - AluSx SINE Alu 0 312 1 2359 99 0 0 chr12 141229355 141229657 -2556798 + AluSx SINE Alu 1 302 -10 339 248 68 72 chr12 141229832 141230082 -2556373 + MLT1J LTR MaLR 188 436 -75 21 0 0 0 chr12 141230425 141230446 -2556009 + AT_rich Low_complexity Low_complexity 1 21 0 1439 207 169 9 chr12 141230446 141230891 -2555564 + Charlie1b DNA MER1_type 2 517 -6 535 217 13 0 chr12 141230972 141231124 -2555331 + (CA)n Simple_repeat Simple_repeat 1 154 0 353 218 23 11 chr12 141231136 141231223 -2555232 + (CATA)n Simple_repeat Simple_repeat 2 89 0 315 247 27 14 chr12 141231229 141231302 -2555153 - L1MCa LINE L1 -4358 2068 1995 240 208 28 28 chr12 141231308 141231380 -2555075 + (CATA)n Simple_repeat Simple_repeat 4 75 0 350 244 8 0 chr12 141231380 141231499 -2554956 + (CA)n Simple_repeat Simple_repeat 1 120 0 4845 58 2 3 chr12 141232029 141232633 -2553822 - L1PA5 LINE L1 0 6154 5552 303 249 55 115 chr12 141232753 141232970 -2553485 + L1MCa LINE L1 1151 1354 -5072 278 261 15 0 chr12 141233414 141233479 -2552976 + L2 LINE L2 3247 3312 -1 316 321 112 11 chr12 141233727 141233914 -2552541 + L1MC4a LINE L1 5017 5222 -924 493 309 92 26 chr12 141233941 141234499 -2551956 + L1MC4a LINE L1 5284 5636 -485 2143 123 10 0 chr12 141235067 141235368 -2551087 + AluSx SINE Alu 1 304 -8 282 217 84 0 chr12 141235644 141235727 -2550728 + L1ME4a LINE L1 5982 6071 -50 621 267 61 0 chr12 141236133 141236298 -2550157 - MER5A DNA MER1_type 0 189 15 232 178 0 0 chr12 141237900 141237945 -2548510 + LTR67 LTR ERVL 513 557 0 480 300 85 15 chr12 141239534 141239734 -2546721 - MIR SINE MIR -32 230 17 1121 228 96 52 chr12 141239762 141240200 -2546255 - MLT1C LTR MaLR 0 467 11 1929 219 39 21 chr12 141240688 141241208 -2545247 + L1MB8 LINE L1 5649 6177 -1 3017 205 25 3 chr12 141241218 141241848 -2544607 + L1MB5 LINE L1 5523 6166 -8 1021 211 65 51 chr12 141242203 141242554 -2543901 + MLT1A2 LTR MaLR 19 374 0 258 266 102 70 chr12 141242565 141242604 -2543851 - LTR33 LTR ERVL -53 468 432 3053 64 71 14 chr12 141242604 141243024 -2543431 + MLT2A1 LTR ERVL 1 444 0 258 266 102 70 chr12 141243024 141243427 -2543028 - LTR33 LTR ERVL -89 432 12 2422 60 0 27 chr12 141244009 141244309 -2542146 - AluSg SINE Alu -18 292 1 281 259 24 12 chr12 141245534 141245619 -2540836 + MLT1G LTR MaLR 40 125 -465 951 161 138 6 chr12 141245619 141245793 -2540662 + AluJb SINE Alu 25 221 -91 1739 171 33 3 chr12 141245793 141246092 -2540363 + AluJo SINE Alu 2 309 -3 876 45 0 0 chr12 141246195 141246306 -2540149 + L1PA4 LINE L1 6045 6155 0 339 135 0 0 chr12 141246313 141246365 -2540090 + MLT1G LTR MaLR 227 278 -312 287 298 25 51 chr12 141246494 141246652 -2539803 + MLT1G LTR MaLR 402 555 0 2265 123 3 0 chr12 141247254 141247554 -2538901 - AluSx SINE Alu -11 301 1 314 121 0 17 chr12 141247564 141247622 -2538833 + (TCCCC)n Simple_repeat Simple_repeat 4 60 0 278 120 6 0 chr12 141247627 141247682 -2538773 - Alu SINE Alu 0 302 253 248 275 46 38 chr12 141247862 141247993 -2538462 - L1ME LINE L1 -264 5857 5726 369 282 39 19 chr12 141248009 141248165 -2538290 - L1ME LINE L1 -481 5640 5482 2234 111 0 7 chr12 141248197 141248495 -2537960 + AluSx SINE Alu 1 296 -16 250 275 0 25 chr12 141248548 141248628 -2537827 - L1ME LINE L1 -2398 5410 5333 567 325 146 38 chr12 141248846 141249758 -2536697 - L1ME LINE L1 -1079 5067 4022 279 267 33 56 chr12 141250046 141250136 -2536319 - MER5A DNA MER1_type -53 136 49 * 377 309 0 24 chr12 141250135 141250258 -2536197 + L3 LINE CR1 1256 1375 -202 434 185 12 0 chr12 141250406 141250487 -2535968 + MER5A DNA MER1_type 28 109 -80 327 318 63 21 chr12 141250813 141251002 -2535453 - MLT1L LTR MaLR -168 447 251 247 333 21 0 chr12 141252850 141252943 -2533512 - MIR SINE MIR 0 262 168 * 336 317 19 10 chr12 141252932 141253036 -2533419 + MIR SINE MIR 155 259 -3 473 270 16 0 chr12 141253044 141253170 -2533285 - MIR SINE MIR -87 175 48 206 324 112 37 chr12 141253836 141254077 -2532378 + L2 LINE L2 2323 2581 -733 648 260 55 20 chr12 141254260 141254460 -2531995 + MIR SINE MIR 8 214 -48 195 42 0 0 chr12 141254466 141254490 -2531965 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 450 268 85 0 chr12 141254520 141254673 -2531782 + MIR SINE MIR 32 197 -65 353 111 32 0 chr12 141255348 141255411 -2531044 + CT-rich Low_complexity Low_complexity 1 65 0 496 144 5 87 chr12 141255484 141255679 -2530776 + CT-rich Low_complexity Low_complexity 1 179 0 372 94 0 0 chr12 141255773 141255826 -2530629 + (GA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 141257481 141257503 -2528952 + AT_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr12 141258418 141258450 -2528005 + A-rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr12 141259686 141259708 -2526747 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 141260782 141260808 -2525647 + GC_rich Low_complexity Low_complexity 1 26 0 35 24 0 0 chr12 141260859 141260901 -2525554 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 141263336 141263357 -2523098 + AT_rich Low_complexity Low_complexity 1 21 0 341 253 19 13 chr12 141265214 141265322 -2521133 + L1MC4 LINE L1 1996 6983 -1339 329 348 0 0 chr12 141265332 141265421 -2521034 + L1MC4 LINE L1 6615 6703 -1339 333 358 0 0 chr12 141265432 141265527 -2520928 + L1MC4 LINE L1 6615 6709 -1333 591 302 36 27 chr12 141266233 141266458 -2519997 + MIR SINE MIR 36 262 0 311 361 24 0 chr12 141266630 141266796 -2519659 - MIR SINE MIR -31 231 62 556 219 39 32 chr12 141267126 141267281 -2519174 + MIR SINE MIR 79 234 -28 332 162 15 44 chr12 141267973 141268041 -2518414 + L1MC4 LINE L1 6638 6703 -1339 * 333 242 32 25 chr12 141268016 141268154 -2518301 - L1MC4 LINE L1 -1333 6709 6612 243 229 0 0 chr12 141268159 141268220 -2518235 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 914 345 25 29 chr12 141268579 141269309 -2517146 - L2 LINE L2 -49 3264 2540 1945 113 19 47 chr12 141269403 141269721 -2516734 - AluSc SINE Alu 0 309 1 949 236 166 40 chr12 141270058 141270456 -2515999 + MLT1D LTR MaLR 23 470 -35 225 339 194 0 chr12 141270477 141270642 -2515813 - MIR SINE MIR -35 227 31 2232 106 6 0 chr12 141271408 141271730 -2514725 - L1PA11 LINE L1 -287 5887 5564 229 272 62 12 chr12 141271731 141271812 -2514643 + MER94 DNA DNA 28 112 -22 1223 221 102 25 chr12 141271894 141272247 -2514208 + MLT2C1 LTR ERVL 15 394 -3 446 295 26 26 chr12 141272329 141272485 -2513970 + MER91A DNA MER1_type 16 171 -25 214 231 87 0 chr12 141272494 141272565 -2513890 + MER91A DNA MER1_type 91 164 -26 207 286 48 0 chr12 141272584 141272647 -2513808 + MIR SINE MIR 87 152 -56 283 194 45 15 chr12 141272758 141272825 -2513630 - MLT1K LTR MaLR 0 588 520 432 272 145 22 chr12 141272898 141273126 -2513329 - MLT1K LTR MaLR -177 411 156 409 287 0 0 chr12 141273589 141273683 -2512772 - MLT1K LTR MaLR -331 257 164 1021 281 16 57 chr12 141274096 141274520 -2511935 - MLT1L LTR MaLR -2 613 207 1877 131 3 30 chr12 141275463 141275768 -2510687 + AluSq SINE Alu 1 297 -16 878 228 79 0 chr12 141276392 141276594 -2509861 + MER58A DNA MER1_type 2 219 -5 259 292 14 0 chr12 141276827 141276899 -2509556 - L2 LINE L2 0 3272 3200 1012 174 6 0 chr12 141276930 141277102 -2509353 - AluSg/x SINE Alu -4 308 136 285 333 73 34 chr12 141277106 141277340 -2509115 - L2 LINE L2 -96 3217 2975 678 287 0 0 chr12 141277490 141277657 -2508798 + MIR SINE MIR 41 207 -55 234 302 52 26 chr12 141277891 141278007 -2508448 - L2 LINE L2 -222 3050 2932 641 211 23 23 chr12 141278810 141278899 -2507556 + Charlie5 DNA MER1_type 2411 2502 -83 2453 64 0 3 chr12 141278899 141279211 -2507244 - AluY SINE Alu 0 311 1 641 211 23 23 chr12 141279211 141279296 -2507159 + Charlie5 DNA MER1_type 2501 2585 0 1876 123 38 3 chr12 141279316 141279608 -2506847 - AluSx SINE Alu -10 302 1 268 284 29 10 chr12 141279653 141279755 -2506700 + Charlie8 DNA MER1_type 45 148 -2269 374 264 61 40 chr12 141281787 141281935 -2504520 - MIR SINE MIR -51 211 61 598 282 92 34 chr12 141282166 141282546 -2503909 - L1ME4a LINE L1 -2 6119 5718 866 283 89 0 chr12 141283967 141284236 -2502219 + MLT2C1 LTR ERVL 58 350 -47 2023 130 0 13 chr12 141284937 141285245 -2501210 + AluJb SINE Alu 1 304 -8 1621 230 100 16 chr12 141286260 141286691 -2499764 - MLT1C LTR MaLR 0 467 1 378 308 38 74 chr12 141286909 141287254 -2499201 - Charlie8 DNA MER1_type -2143 274 38 482 245 20 0 chr12 141287346 141287448 -2499007 + MLT1D LTR MaLR 1 104 -401 442 272 7 10 chr12 141287521 141287813 -2498642 + (CA)n Simple_repeat Simple_repeat 1 291 0 297 241 6 30 chr12 141287835 141288001 -2498454 + (CA)n Simple_repeat Simple_repeat 1 162 0 237 265 11 22 chr12 141288039 141288220 -2498235 + (CA)n Simple_repeat Simple_repeat 2 180 0 226 270 0 56 chr12 141288225 141288314 -2498141 + (CATA)n Simple_repeat Simple_repeat 2 85 0 276 57 19 38 chr12 141288333 141288386 -2498069 + (CA)n Simple_repeat Simple_repeat 2 53 0 817 242 65 112 chr12 141288975 141289404 -2497051 - MLT1C LTR MaLR -49 418 10 563 296 53 19 chr12 141289536 141289742 -2496713 + MIR SINE MIR 16 228 -34 353 301 127 12 chr12 141289759 141289932 -2496523 + MIR SINE MIR 70 262 0 1753 196 123 18 chr12 141289948 141290396 -2496059 - MLT1D LTR MaLR -9 496 2 456 292 59 51 chr12 141290983 141291457 -2494998 - LTR33A LTR ERVL -6 517 2 227 259 212 0 chr12 141291673 141291758 -2494697 - MIR SINE MIR -50 212 110 488 273 88 19 chr12 141292105 141292310 -2494145 + MIR SINE MIR 20 238 -24 435 325 89 6 chr12 141292727 141292783 -2493672 - MIR SINE MIR -46 216 166 207 69 0 0 chr12 141292783 141292812 -2493643 + (TTA)n Simple_repeat Simple_repeat 1 29 0 435 325 89 6 chr12 141292812 141292924 -2493531 - MIR SINE MIR -96 166 34 509 221 124 0 chr12 141292927 141293072 -2493383 - L1MD1 LINE L1 0 6242 6080 1656 150 3 37 chr12 141293079 141293411 -2493044 - AluJb SINE Alu 0 322 1 1196 268 61 70 chr12 141293645 141294205 -2492250 + MLT1G1 LTR MaLR 28 582 -13 374 308 26 0 chr12 141294206 141294323 -2492132 - L2 LINE L2 -7 3306 3187 964 287 116 29 chr12 141295421 141295842 -2490613 + MLT1K LTR MaLR 122 579 -9 1729 198 65 59 chr12 141295955 141296444 -2490011 - MLT1D LTR MaLR -12 493 2 428 332 123 25 chr12 141297203 141297477 -2488978 + L2 LINE L2 2809 3144 -169 1475 176 28 47 chr12 141297477 141297713 -2488742 - AluJb SINE Alu 0 312 82 2236 96 7 0 chr12 141297713 141298015 -2488440 - AluSg SINE Alu -6 304 1 1475 176 28 47 chr12 141298015 141298096 -2488359 - AluJb SINE Alu -230 82 1 428 332 123 25 chr12 141298096 141298261 -2488194 + L2 LINE L2 3144 3291 -22 1306 253 91 2 chr12 141298799 141299195 -2487260 + MLT1H1 LTR MaLR 123 553 -2 243 0 0 0 chr12 141299269 141299296 -2487159 + (CA)n Simple_repeat Simple_repeat 2 28 0 1539 99 50 14 chr12 141299316 141299538 -2486917 - MER30 DNA MER1_type 0 230 1 243 146 0 0 chr12 141299548 141299589 -2486866 + (TTC)n Simple_repeat Simple_repeat 2 42 0 616 274 15 34 chr12 141299923 141300127 -2486328 + MIR SINE MIR 62 261 -1 1691 189 57 14 chr12 141300301 141300650 -2485805 + MLT1A1 LTR MaLR 1 364 -1 243 378 0 0 chr12 141301135 141301225 -2485230 - MIR SINE MIR -71 191 102 1555 222 46 30 chr12 141301899 141302331 -2484124 - L1MB5 LINE L1 -6 6168 5730 227 182 0 45 chr12 141303125 141303213 -2483242 + (TG)n Simple_repeat Simple_repeat 2 85 0 215 330 0 0 chr12 141303228 141303325 -2483130 + (TG)n Simple_repeat Simple_repeat 2 98 0 207 257 156 18 chr12 141303874 141303983 -2482472 - MIR SINE MIR -12 250 127 1523 188 169 33 chr12 141304864 141304924 -2481531 - MLT1D LTR MaLR -7 498 448 1823 144 0 56 chr12 141304924 141305243 -2481212 + AluJb SINE Alu 1 301 -11 1523 188 169 33 chr12 141305243 141305602 -2480853 - MLT1D LTR MaLR -57 448 22 225 0 0 0 chr12 141306036 141306061 -2480394 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2294 122 0 0 chr12 141306807 141307119 -2479336 - AluSx SINE Alu 0 312 1 203 310 88 0 chr12 141307715 141307828 -2478627 - L2 LINE L2 -4 3268 3146 452 312 48 0 chr12 141308178 141308367 -2478088 - MIR SINE MIR -34 228 31 1770 258 35 47 chr12 141308388 141308457 -2477998 - L1MB7 LINE L1 -21 6163 6095 1756 98 4 16 chr12 141308457 141308701 -2477754 - AluSq SINE Alu 0 313 73 1770 258 35 47 chr12 141308701 141309228 -2477227 - L1MB7 LINE L1 -89 6095 5574 297 315 60 22 chr12 141309840 141310019 -2476436 - MLT1G1 LTR MaLR -341 249 65 2216 217 23 25 chr12 141310048 141310249 -2476206 - MER74A LTR ERVL -27 531 331 2592 110 0 0 chr12 141310249 141310613 -2475842 + THE1B LTR MaLR 1 364 0 2216 217 23 25 chr12 141310613 141310941 -2475514 - MER74A LTR ERVL -227 331 3 312 306 50 56 chr12 141311488 141311648 -2474807 + MIR SINE MIR 104 262 0 242 314 23 0 chr12 141311814 141311900 -2474555 + MIR SINE MIR 175 262 0 1679 239 50 80 chr12 141313981 141314520 -2471935 - MLT1G1 LTR MaLR 0 595 73 386 319 89 12 chr12 141314813 141314925 -2471530 + MIR SINE MIR 35 166 -96 207 69 0 0 chr12 141314925 141314954 -2471501 + (TAA)n Simple_repeat Simple_repeat 1 29 0 386 319 89 12 chr12 141314954 141315010 -2471445 + MIR SINE MIR 166 216 -46 195 69 0 0 chr12 141315045 141315074 -2471381 + (A)n Simple_repeat Simple_repeat 1 29 0 465 273 88 19 chr12 141315422 141315627 -2470828 - MIR SINE MIR -24 238 20 216 0 0 0 chr12 141316517 141316541 -2469914 + (GA)n Simple_repeat Simple_repeat 1 24 0 1989 158 78 10 chr12 141316765 141317165 -2469290 + MSTC LTR MaLR 1 427 -1 2278 142 49 5 chr12 141317281 141317689 -2468766 - MSTB LTR MaLR 0 426 1 2204 82 0 11 chr12 141318064 141318343 -2468112 - AluY SINE Alu -34 277 2 460 293 121 11 chr12 141318483 141318657 -2467798 - MIR SINE MIR -14 248 56 1668 139 160 37 chr12 141318754 141319135 -2467320 + MSTA LTR MaLR 1 428 0 226 103 0 51 chr12 141319305 141319344 -2467111 - MLT1G3 LTR MaLR -312 218 182 * 1069 229 27 27 chr12 141319331 141319589 -2466866 - MLT1H1 LTR MaLR -297 258 1 210 337 11 7 chr12 141319808 141319931 -2466524 - MER5B DNA MER1_type 0 189 57 3221 126 4 25 chr12 141320154 141320288 -2466167 - MER75 DNA T2_type -2 512 377 2016 139 13 0 chr12 141320288 141320590 -2465865 - AluSq SINE Alu -7 306 1 3221 126 4 25 chr12 141320590 141320978 -2465477 - MER75 DNA T2_type -137 377 1 278 159 0 0 chr12 141321001 141321045 -2465410 - MER75 DNA T2_type -470 44 1 2280 226 11 32 chr12 141321157 141321680 -2464775 - MLT2B1 LTR ERVL -8 512 1 287 240 68 75 chr12 141321931 141322053 -2464402 - L1ME LINE L1 -468 5653 5522 194 259 0 17 chr12 141322056 141322114 -2464341 - MER5B DNA MER1_type -118 60 4 1136 253 187 14 chr12 141323893 141324400 -2462055 + L1MD3 LINE L1 7370 7964 -31 285 127 63 0 chr12 141324443 141324506 -2461949 + L1MC3 LINE L1 7716 7782 -3 323 285 88 64 chr12 141324552 141324644 -2461811 - L1ME4a LINE L1 -106 6015 5927 2228 87 22 0 chr12 141324644 141324947 -2461508 + AluSg SINE Alu 1 309 0 323 285 88 64 chr12 141324947 141325148 -2461307 - L1ME4a LINE L1 -194 5927 5714 2348 93 0 10 chr12 141325252 141325553 -2460902 + AluSx SINE Alu 3 300 -12 330 316 26 19 chr12 141325557 141325712 -2460743 + L1ME3A LINE L1 5431 5586 -2222 334 302 47 0 chr12 141325736 141325865 -2460590 + L1ME3A LINE L1 6036 6170 0 1319 227 17 14 chr12 141327725 141328073 -2458382 - MLT1A1 LTR MaLR -4 361 13 2489 77 0 6 chr12 141328875 141329188 -2457267 - AluY SINE Alu 0 311 1 242 208 21 0 chr12 141329683 141329731 -2456724 - Charlie8 DNA MER1_type 0 2417 2369 209 182 71 101 chr12 141330040 141330139 -2456316 - L2 LINE L2 -18 3254 3159 282 194 0 56 chr12 141330618 141330690 -2455765 + L2 LINE L2 3204 3271 -1 1400 153 5 5 chr12 141331075 141331291 -2455164 + AluJo SINE Alu 1 216 -96 851 241 26 4 chr12 141331343 141331609 -2454846 + L1MA4 LINE L1 6028 6299 -1 1162 312 90 4 chr12 141331734 141332202 -2454253 - MER20B DNA MER1_type -261 522 15 1242 87 0 0 chr12 141332645 141332817 -2453638 + L1MA2 LINE L1 6124 6295 -9 2300 104 3 3 chr12 141332817 141333114 -2453341 - AluSx SINE Alu -15 297 1 2729 203 23 11 chr12 141333155 141333767 -2452688 - L1MB3 LINE L1 -14 6169 5551 425 287 34 42 chr12 141333843 141334071 -2452384 + MIR SINE MIR 4 237 -25 436 258 59 54 chr12 141334095 141334281 -2452174 - Charlie8 DNA MER1_type -2226 191 5 194 213 0 0 chr12 141334317 141334364 -2452091 - L2 LINE L2 -214 3058 3012 190 301 66 22 chr12 141335393 141335529 -2450926 + L2 LINE L2 2920 3061 -252 585 300 53 0 chr12 141335569 141335759 -2450696 - MER20 DNA MER1_type -4 215 16 2310 119 8 22 chr12 141337617 141337986 -2448469 + THE1B LTR MaLR 1 364 0 1640 145 0 46 chr12 141338134 141338416 -2448039 - AluJo SINE Alu 0 312 44 1796 250 50 32 chr12 141338417 141338542 -2447913 - L1ME2 LINE L1 -63 6101 5980 2421 102 0 3 chr12 141338542 141338847 -2447608 - AluSx SINE Alu -8 304 1 1796 250 50 32 chr12 141338847 141339246 -2447209 - L1ME2 LINE L1 -184 5980 5564 1670 167 34 78 chr12 141339246 141339654 -2446801 + MLT1B LTR MaLR 1 390 0 1796 250 50 32 chr12 141339654 141339693 -2446762 - L1ME2 LINE L1 -600 5564 5527 343 221 35 0 chr12 141339756 141339842 -2446613 - L1ME2 LINE L1 -648 5516 5428 1696 273 14 0 chr12 141339870 141340309 -2446146 - L1MB5 LINE L1 0 6174 5730 263 222 97 0 chr12 141340312 141340384 -2446071 - L1ME2 LINE L1 -729 5441 5363 258 32 0 0 chr12 141341061 141341092 -2445363 + (TC)n Simple_repeat Simple_repeat 1 31 0 409 227 31 55 chr12 141341225 141341388 -2445067 + L1ME3A LINE L1 6010 6168 -2 282 335 103 0 chr12 141342662 141342865 -2443590 - MIR SINE MIR -15 247 24 550 284 140 66 chr12 141343906 141344392 -2442063 + LTR67 LTR ERVL 25 546 -11 342 374 28 11 chr12 141344887 141345069 -2441386 - L1ME2 LINE L1 -765 5381 5197 227 300 0 14 chr12 141345269 141345339 -2441116 + (CA)n Simple_repeat Simple_repeat 2 70 0 241 217 39 23 chr12 141345405 141345534 -2440921 + (CATA)n Simple_repeat Simple_repeat 1 131 0 186 221 79 93 chr12 141345611 141345751 -2440704 + MIR SINE MIR 120 257 -5 441 129 0 0 chr12 141347174 141347244 -2439211 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 1924 149 3 3 chr12 141347244 141347540 -2438915 - AluSx SINE Alu -16 296 1 687 244 70 43 chr12 141347637 141347867 -2438588 - MLT1J1 LTR MaLR -2 444 209 2120 91 3 67 chr12 141348016 141348346 -2438109 + AluSg SINE Alu 1 309 -1 436 264 56 8 chr12 141348913 141349038 -2437417 - L2 LINE L2 -8 3305 3175 313 305 52 21 chr12 141349060 141349238 -2437217 + MLT1J LTR MaLR 27 275 -310 180 111 0 0 chr12 141349537 141349564 -2436891 + (TG)n Simple_repeat Simple_repeat 2 28 0 301 125 0 0 chr12 141349584 141349632 -2436823 - FLAM_A SINE Alu -46 87 40 490 250 77 15 chr12 141349737 141349966 -2436489 - MLT1H1 LTR MaLR -241 314 27 204 261 0 15 chr12 141350255 141350320 -2436135 + CT-rich Low_complexity Low_complexity 1 64 0 224 302 132 39 chr12 141350341 141350470 -2435985 + MIR SINE MIR 13 153 -109 2467 122 5 3 chr12 141350515 141350885 -2435570 + THE1C LTR MaLR 5 375 0 304 170 0 0 chr12 141351444 141351497 -2434958 + L1ME4a LINE L1 5965 6017 -104 620 266 13 0 chr12 141351834 141351988 -2434467 + MIR SINE MIR 45 200 -62 1230 190 62 6 chr12 141353296 141353754 -2432701 + MLT1F1 LTR MaLR 3 560 -7 268 299 71 39 chr12 141353826 141353953 -2432502 + MIR SINE MIR 107 237 -25 1778 116 8 0 chr12 141354475 141354717 -2431738 - AluSx SINE Alu -16 296 53 373 281 32 56 chr12 141355045 141355225 -2431230 - MIR SINE MIR -63 145 17 664 332 29 0 chr12 141355336 141355580 -2430875 + MIR SINE MIR 9 259 -3 456 209 0 9 chr12 141355879 141355984 -2430471 + L1MB1 LINE L1 6073 6176 -13 2203 133 36 28 chr12 141356104 141356465 -2429990 + THE1B LTR MaLR 1 364 0 1031 118 0 7 chr12 141356955 141357091 -2429364 + AluSq/x SINE Alu 2 136 -177 1540 98 213 4 chr12 141357092 141357336 -2429119 + AluSg1 SINE Alu 3 297 -12 973 292 60 21 chr12 141357876 141358393 -2428062 + MLT1L LTR MaLR 45 581 -34 563 284 144 19 chr12 141358442 141358657 -2427798 + MIR SINE MIR 15 256 -6 653 287 65 56 chr12 141358934 141359008 -2427447 + L1ME3A LINE L1 5649 5721 -449 1417 188 55 89 chr12 141359008 141359412 -2427043 + MLT1B LTR MaLR 1 390 0 653 287 65 56 chr12 141359412 141359766 -2426689 + L1ME3A LINE L1 5721 6081 -89 216 0 0 0 chr12 141360047 141360071 -2426384 + (GA)n Simple_repeat Simple_repeat 1 24 0 2172 157 75 10 chr12 141360295 141360696 -2425759 + MSTC LTR MaLR 1 427 -1 2431 142 49 5 chr12 141360812 141361220 -2425235 - MSTB LTR MaLR 0 426 1 2028 127 7 0 chr12 141361595 141361871 -2424584 - AluSx SINE Alu -34 278 1 211 304 0 0 chr12 141361924 141361980 -2424475 - MIR SINE MIR -133 75 20 687 274 39 10 chr12 141361987 141362191 -2424264 + MER63A DNA MER1_type 1 210 0 3484 162 19 7 chr12 141362262 141362854 -2423601 + MER7C DNA MER2_type 1 599 -3 664 288 103 4 chr12 141363324 141363557 -2422898 + MIR SINE MIR 4 259 -3 2753 89 16 3 chr12 141364463 141364833 -2421622 - THE1C LTR MaLR 0 375 1 10882 108 33 10 chr12 141364833 141366377 -2420078 - THE1C-int LTR MaLR 0 1580 1 2660 101 3 34 chr12 141366377 141366764 -2419691 - THE1C LTR MaLR 0 375 1 438 344 57 19 chr12 141366936 141367148 -2419307 - MIR SINE MIR -21 241 22 1147 227 77 50 chr12 141367312 141367753 -2418702 - MLT1C LTR MaLR -9 458 6 1575 184 7 48 chr12 141368370 141368680 -2417775 + AluJo SINE Alu 1 297 -15 1863 174 0 22 chr12 141369769 141370086 -2416369 - AluJo SINE Alu -2 310 1 938 249 68 53 chr12 141370321 141370719 -2415736 - MLT1C LTR MaLR 0 467 64 317 297 11 11 chr12 141370786 141370877 -2415578 - L2 LINE L2 -40 3273 3183 1980 131 154 34 chr12 141371031 141371413 -2415042 - MSTA LTR MaLR 0 428 1 489 282 121 11 chr12 141371510 141371684 -2414771 + MIR SINE MIR 56 248 -14 2475 75 0 10 chr12 141371824 141372132 -2414323 + AluY SINE Alu 2 306 -5 461 256 66 40 chr12 141372309 141372543 -2413912 + MIR SINE MIR 7 243 -19 282 184 33 4 chr12 141372599 141372842 -2413613 + (TG)n Simple_repeat Simple_repeat 1 250 0 277 161 54 0 chr12 141372928 141373077 -2413378 + (TG)n Simple_repeat Simple_repeat 1 157 0 276 154 49 0 chr12 141373100 141373223 -2413232 + (TG)n Simple_repeat Simple_repeat 1 129 0 182 170 36 27 chr12 141373265 141373377 -2413078 + (TG)n Simple_repeat Simple_repeat 1 113 0 337 189 22 22 chr12 141373961 141374141 -2412314 + (TG)n Simple_repeat Simple_repeat 1 180 0 289 279 96 15 chr12 141374367 141374503 -2411952 + Charlie8 DNA MER1_type 129 275 -2142 697 148 53 53 chr12 141375527 141375687 -2410768 - MER53 DNA DNA 0 189 26 2213 109 0 0 chr12 141375687 141376016 -2410439 - AluSx SINE Alu 0 329 1 697 148 53 53 chr12 141376016 141376043 -2410412 - MER53 DNA DNA -162 27 1 736 204 14 0 chr12 141376073 141376215 -2410240 + MIR SINE MIR 34 177 -85 207 359 46 14 chr12 141376324 141376541 -2409914 + L2 LINE L2 2815 3038 -234 * 228 204 23 0 chr12 141376539 141376583 -2409872 - L2 LINE L2 -3 3310 3266 962 276 76 0 chr12 141376584 141376874 -2409581 + MER58B DNA MER1_type 2 313 -28 451 249 139 48 chr12 141377049 141377322 -2409133 - L2 LINE L2 -831 2483 2186 861 286 14 0 chr12 141377418 141377638 -2408817 + MIR SINE MIR 15 237 -25 313 191 22 56 chr12 141377680 141377769 -2408686 + L2 LINE L2 3153 3238 -34 767 238 16 5 chr12 141378299 141378484 -2407971 - MER105 DNA DNA -12 192 6 1074 101 0 0 chr12 141378585 141378743 -2407712 + (AATAG)n Simple_repeat Simple_repeat 1 158 0 264 262 75 0 chr12 141379403 141379510 -2406945 - LTR67 LTR ERVL 0 557 443 351 250 62 75 chr12 141379691 141379851 -2406604 + MIR SINE MIR 52 209 -53 314 217 72 24 chr12 141380092 141380175 -2406280 - MER91A DNA MER1_type -109 87 1 461 194 52 37 chr12 141380792 141380926 -2405529 - MER119 DNA MER1_type 0 583 448 322 252 92 17 chr12 141380919 141381038 -2405417 - MER119 DNA MER1_type -450 133 6 * 215 297 0 0 chr12 141381151 141381225 -2405230 + MIR SINE MIR 154 227 -35 2601 62 0 0 chr12 141381498 141381805 -2404650 - AluY SINE Alu -4 307 1 315 237 69 84 chr12 141381855 141381986 -2404469 - MER5B DNA MER1_type 0 178 50 2308 116 0 0 chr12 141381999 141382309 -2404146 - AluSx SINE Alu -2 310 1 336 263 162 43 chr12 141382506 141382696 -2403759 - L1MC/D LINE L1 -686 5658 5444 258 81 0 0 chr12 141383048 141383085 -2403370 + (TG)n Simple_repeat Simple_repeat 2 38 0 332 220 8 85 chr12 141383103 141383221 -2403234 + L1MC4 LINE L1 7914 8022 -20 343 267 203 40 chr12 141384471 141384673 -2401782 - L2 LINE L2 -8 3264 3030 401 344 78 0 chr12 141384767 141385023 -2401432 - Charlie8 DNA MER1_type -2140 277 2 347 280 21 29 chr12 141385189 141385532 -2400923 + (TATG)n Simple_repeat Simple_repeat 1 339 0 256 341 12 0 chr12 141385532 141385614 -2400841 + (CATG)n Simple_repeat Simple_repeat 1 83 0 249 316 0 0 chr12 141385620 141385791 -2400664 + (TG)n Simple_repeat Simple_repeat 2 172 0 374 297 31 0 chr12 141385793 141385921 -2400534 + (TATG)n Simple_repeat Simple_repeat 2 133 0 310 332 0 3 chr12 141385922 141386227 -2400228 + (TG)n Simple_repeat Simple_repeat 1 303 0 227 310 183 9 chr12 141386860 141387073 -2399382 + MIR SINE MIR 13 262 0 199 299 82 21 chr12 141387054 141387151 -2399304 - MIR SINE MIR -59 203 101 * 761 248 43 4 chr12 141387477 141387711 -2398744 + MER63 DNA MER1_type 52 294 -636 763 242 53 5 chr12 141387861 141388082 -2398373 + MIR SINE MIR 33 261 -1 1895 232 10 2 chr12 141388114 141388527 -2397928 - L1MB5 LINE L1 -6 6168 5753 1134 219 23 0 chr12 141388546 141388811 -2397644 - L1MA4 LINE L1 -5 6295 6025 2033 174 16 38 chr12 141388811 141389155 -2397300 - L1MB5 LINE L1 -442 5732 5399 2823 87 3 11 chr12 141389155 141389533 -2396922 + THE1C LTR MaLR 1 375 0 2033 174 16 38 chr12 141389533 141389637 -2396818 - L1MB5 LINE L1 -775 5399 5294 462 292 117 71 chr12 141390574 141391100 -2395355 - L2 LINE L2 -5 3308 2763 1089 174 28 0 chr12 141391123 141391320 -2395135 - MER57A LTR ERV1 0 403 201 2723 89 5 0 chr12 141391320 141391702 -2394753 + MER41A LTR ERV1 1 384 -170 358 153 42 0 chr12 141391710 141391782 -2394673 - MER57A LTR ERV1 -195 208 134 2350 103 3 10 chr12 141392295 141392607 -2393848 - AluSg SINE Alu 0 310 1 354 250 0 0 chr12 141392835 141392915 -2393540 - Tigger7 DNA MER2_type -12 2479 2400 * 1923 226 40 25 chr12 141392914 141393391 -2393064 - Tigger7 DNA MER2_type -1965 522 39 737 278 72 48 chr12 141394595 141395055 -2391400 + MLT1K LTR MaLR 116 586 -2 183 266 139 13 chr12 141395157 141395236 -2391219 + L3 LINE CR1 358 446 -1131 254 356 191 8 chr12 141395300 141395536 -2390919 + L3 LINE CR1 569 847 -730 1237 160 49 4 chr12 141397897 141398141 -2388314 - MER50 LTR ERV1 -47 687 433 1181 131 25 47 chr12 141398132 141398368 -2388087 - MER50 LTR ERV1 -501 233 3 * 248 233 0 70 chr12 141398614 141398700 -2387755 + LTR33A LTR ERVL 421 500 -23 760 211 158 5 chr12 141398740 141398930 -2387525 - MER58A DNA MER1_type 0 224 6 1520 171 57 87 chr12 141400277 141400716 -2385739 - LTR37A LTR ERV1 0 426 1 677 232 49 62 chr12 141401266 141401635 -2384820 - L1ME2 LINE L1 -5 6161 5811 263 259 129 0 chr12 141402492 141402577 -2383878 + L1M4 LINE L1 4561 4656 -1490 1539 139 0 33 chr12 141402577 141402821 -2383634 + AluJb SINE Alu 64 299 -13 2327 107 16 0 chr12 141403586 141403894 -2382561 - AluSq SINE Alu 0 313 1 1749 174 7 10 chr12 141403894 141404192 -2382263 - AluJo SINE Alu -15 297 1 261 234 31 0 chr12 141405266 141405330 -2381125 + CT-rich Low_complexity Low_complexity 3 68 0 216 0 0 0 chr12 141405416 141405440 -2381015 + (TG)n Simple_repeat Simple_repeat 2 25 0 5159 121 110 124 chr12 141405570 141407114 -2379341 - pTR5 LTR ERV1 0 2438 743 956 138 23 29 chr12 141407120 141407294 -2379161 - MER20 DNA MER1_type -1 218 46 1543 183 4 19 chr12 141407450 141407718 -2378737 + AluJo SINE Alu 23 286 -26 1817 145 6 63 chr12 141407998 141408191 -2378264 - AluJo SINE Alu -12 300 130 1940 144 10 7 chr12 141408191 141408490 -2377965 + AluSx SINE Alu 1 300 -12 1817 145 6 63 chr12 141408490 141408613 -2377842 - AluJo SINE Alu -182 130 2 2356 85 0 0 chr12 141409177 141409470 -2376985 - AluSg SINE Alu 0 310 18 862 252 72 0 chr12 141410250 141410472 -2375983 + MIR SINE MIR 25 262 0 229 378 74 7 chr12 141410858 141411006 -2375449 - MIR SINE MIR -46 216 59 1055 253 114 60 chr12 141411035 141411518 -2374937 + Charlie8 DNA MER1_type 2 510 -1907 1991 122 44 0 chr12 141412152 141412448 -2374007 + AluSx SINE Alu 1 309 -3 760 300 84 0 chr12 141412936 141413163 -2373292 + MIR SINE MIR 10 255 -7 256 340 28 0 chr12 141413276 141413382 -2373073 + Charlie8 DNA MER1_type 1 109 -2308 2376 107 0 3 chr12 141413424 141413734 -2372721 + AluSg SINE Alu 1 309 -1 482 127 0 0 chr12 141413754 141413825 -2372630 + AluJ/FLAM SINE Alu 14 84 -228 595 254 14 0 chr12 141413954 141414096 -2372359 + Charlie5 DNA MER1_type 2442 2585 -27 469 141 0 0 chr12 141414600 141414671 -2371784 - AluJ/FLAM SINE Alu -228 84 14 225 0 0 0 chr12 141414843 141414868 -2371587 + (CATCG)n Simple_repeat Simple_repeat 5 29 0 744 222 53 0 chr12 141415355 141415526 -2370929 + MLT2C2 LTR ERVL 4 183 -281 479 194 14 10 chr12 141415746 141415876 -2370579 + MLT2C2 LTR ERVL 216 346 -51 429 193 30 12 chr12 141415916 141416082 -2370373 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 467 160 5 27 chr12 141416152 141416375 -2370080 + (CA)n Simple_repeat Simple_repeat 1 217 0 295 74 0 111 chr12 141416375 141416429 -2370026 + MLT2C1 LTR ERVL 350 397 0 1517 182 52 17 chr12 141417057 141417419 -2369036 + THE1C LTR MaLR 1 375 0 2352 81 13 0 chr12 141417842 141418140 -2368315 + AluSx SINE Alu 1 302 -10 613 239 15 11 chr12 141421217 141421382 -2365073 + MLT1A1 LTR MaLR 2 149 -216 251 228 35 110 chr12 141421590 141421735 -2364720 - MLT1K LTR MaLR -126 462 329 409 292 73 23 chr12 141422843 141423062 -2363393 + MLT1K LTR MaLR 347 576 -12 423 268 9 18 chr12 141423695 141423807 -2362648 - MIR SINE MIR -46 216 106 617 267 34 0 chr12 141424087 141424584 -2361871 + MLT1K LTR MaLR 84 247 -341 413 304 148 52 chr12 141424595 141424999 -2361456 + MLT1K LTR MaLR 139 581 -7 198 295 174 34 chr12 141425025 141425174 -2361281 - MIR SINE MIR -1 261 92 288 256 92 51 chr12 141425928 141426123 -2360332 - LTR33 LTR ERVL -21 500 298 834 253 128 35 chr12 141426733 141427156 -2359299 + MLT1L LTR MaLR 145 606 -9 2864 111 2 0 chr12 141427587 141428011 -2358444 - L1PA11 LINE L1 0 6174 5750 219 361 65 19 chr12 141429140 141429248 -2357207 + MER5A DNA MER1_type 59 171 -18 419 177 31 0 chr12 141429378 141429472 -2356983 + MLT1J2 LTR MaLR 73 173 -249 2689 49 0 0 chr12 141429524 141429832 -2356623 + AluY SINE Alu 1 308 -3 2334 110 0 3 chr12 141429871 141430181 -2356274 + AluSx SINE Alu 1 309 -3 227 308 13 0 chr12 141430350 141430428 -2356027 + LTR37A LTR ERV1 122 200 -226 348 320 61 27 chr12 141430506 141430653 -2355802 + MLT1J2 LTR MaLR 285 436 -14 349 286 97 22 chr12 141430947 141431132 -2355323 + MIR SINE MIR 29 227 -35 203 256 128 13 chr12 141431262 141431340 -2355115 - L2 LINE L2 0 3313 3227 486 316 192 16 chr12 141431732 141432096 -2354359 - LTR16A LTR ERVL -7 443 16 * 564 279 32 18 chr12 141432095 141432314 -2354141 - MLT1J LTR MaLR -286 225 4 347 254 33 33 chr12 141433026 141433148 -2353307 - L1M4 LINE L1 -831 5315 5194 394 352 85 0 chr12 141433596 141433771 -2352684 - Charlie8 DNA MER1_type -65 276 75 198 0 0 0 chr12 141433771 141433793 -2352662 + (CAA)n Simple_repeat Simple_repeat 2 23 0 394 352 85 0 chr12 141433793 141433853 -2352602 - Charlie8 DNA MER1_type -266 75 21 846 189 0 0 chr12 141433952 141434234 -2352221 + (ATG)n Simple_repeat Simple_repeat 1 282 0 450 347 21 19 chr12 141434730 141435073 -2351382 + GA-rich Low_complexity Low_complexity 1 343 0 680 247 132 18 chr12 141435178 141435397 -2351058 - Charlie8 DNA MER1_type -2172 245 2 229 378 74 7 chr12 141435426 141435574 -2350881 + MIR SINE MIR 59 216 -46 862 252 72 0 chr12 141435960 141436182 -2350273 - MIR SINE MIR 0 262 25 2356 85 0 0 chr12 141436962 141437255 -2349200 + AluSg SINE Alu 18 310 0 1817 145 6 63 chr12 141437819 141437942 -2348513 + AluJo SINE Alu 2 130 -182 1940 144 10 7 chr12 141437942 141438241 -2348214 - AluSx SINE Alu -12 300 1 1817 145 6 63 chr12 141438241 141438434 -2348021 + AluJo SINE Alu 130 300 -12 1543 183 4 19 chr12 141438714 141438982 -2347473 - AluJo SINE Alu -26 286 23 919 149 23 29 chr12 141439139 141439313 -2347142 + MER20 DNA MER1_type 46 218 -1 5170 123 108 122 chr12 141439319 141440863 -2345592 + pTR5 LTR ERV1 743 2438 0 288 0 0 0 chr12 141440993 141441025 -2345430 + (CA)n Simple_repeat Simple_repeat 2 33 0 190 193 35 0 chr12 141441110 141441167 -2345288 + GA-rich Low_complexity Low_complexity 2 60 0 1749 174 7 10 chr12 141442249 141442547 -2343908 + AluJo SINE Alu 1 297 -15 2198 121 13 0 chr12 141442547 141442845 -2343610 + AluSx SINE Alu 1 302 -10 230 301 27 0 chr12 141442930 141443003 -2343452 + MIR3 SINE MIR 94 168 -40 490 278 138 44 chr12 141443194 141443421 -2343034 - L2 LINE L2 -47 3266 3062 2263 131 0 0 chr12 141443421 141443719 -2342736 + AluSx SINE Alu 1 298 -14 490 278 138 44 chr12 141443719 141444062 -2342393 - L2 LINE L2 -251 3062 2593 2102 116 39 3 chr12 141444134 141444418 -2342037 + AluSx SINE Alu 1 294 -18 1649 168 40 13 chr12 141445197 141445377 -2341078 - AluJo SINE Alu -4 308 115 354 45 0 0 chr12 141445377 141445421 -2341034 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1649 168 40 13 chr12 141445421 141445538 -2340917 - AluJo SINE Alu -197 115 3 689 208 0 8 chr12 141445552 141445682 -2340773 - FLAM_C SINE Alu -3 130 2 613 241 14 10 chr12 141448466 141448632 -2337823 + MLT1A1 LTR MaLR 2 149 -216 251 228 35 110 chr12 141448841 141448986 -2337469 - MLT1K LTR MaLR -126 462 329 397 297 73 23 chr12 141450093 141450312 -2336143 + MLT1K LTR MaLR 347 576 -12 423 268 9 18 chr12 141450945 141451057 -2335398 - MIR SINE MIR -46 216 106 617 261 33 0 chr12 141451337 141451704 -2334751 + MLT1K LTR MaLR 84 247 -341 413 304 148 52 chr12 141451715 141452119 -2334336 + MLT1K LTR MaLR 139 581 -7 198 295 174 34 chr12 141452145 141452294 -2334161 - MIR SINE MIR -1 261 92 270 241 92 51 chr12 141453048 141453243 -2333212 - LTR33 LTR ERVL -21 500 298 870 244 130 38 chr12 141453854 141454277 -2332178 + MLT1L LTR MaLR 145 606 -9 2998 111 2 0 chr12 141454708 141455132 -2331323 - L1PA11 LINE L1 0 6174 5750 214 361 65 19 chr12 141456264 141456372 -2330083 + MER5A DNA MER1_type 59 171 -18 436 167 26 2 chr12 141456504 141456596 -2329859 + MLT1J2 LTR MaLR 93 173 -277 2702 39 0 0 chr12 141456648 141456953 -2329502 + AluY SINE Alu 1 305 -6 2310 109 0 3 chr12 141456992 141457303 -2329152 + AluSx SINE Alu 1 310 -2 227 308 13 0 chr12 141457473 141457551 -2328904 + LTR37A LTR ERV1 122 200 -226 349 272 93 62 chr12 141457624 141457786 -2328669 + MLT1J2 LTR MaLR 276 442 -8 313 285 97 21 chr12 141458069 141458255 -2328200 + MIR SINE MIR 28 227 -35 195 256 128 13 chr12 141458384 141458462 -2327993 - L2 LINE L2 0 3313 3227 247 340 197 5 chr12 141458854 141459057 -2327398 - LTR16A LTR ERVL -7 443 202 535 288 32 18 chr12 141459217 141459436 -2327019 - MLT1J LTR MaLR -286 225 4 400 321 86 0 chr12 141460720 141460895 -2325560 - Charlie8 DNA MER1_type -65 265 76 198 0 0 0 chr12 141460895 141460917 -2325538 + (CAA)n Simple_repeat Simple_repeat 2 23 0 400 321 86 0 chr12 141460917 141460963 -2325492 - Charlie8 DNA MER1_type -254 76 35 846 189 0 0 chr12 141461076 141461358 -2325097 + (ATG)n Simple_repeat Simple_repeat 1 282 0 364 306 71 20 chr12 141462920 141463249 -2323206 + MLT1I LTR MaLR 32 409 0 189 214 0 0 chr12 141463533 141463575 -2322880 + (TA)n Simple_repeat Simple_repeat 1 42 0 1112 196 27 5 chr12 141464390 141464609 -2321846 + MER58A DNA MER1_type 1 224 0 234 150 0 0 chr12 141465474 141465514 -2320941 + (TG)n Simple_repeat Simple_repeat 2 41 0 1880 187 13 40 chr12 141466520 141466895 -2319560 - MLT1A1 LTR MaLR 0 365 1 226 250 135 21 chr12 141467658 141467754 -2318701 + L2 LINE L2 3207 3313 0 503 299 35 17 chr12 141468413 141468587 -2317868 + Charlie8 DNA MER1_type 44 220 -2197 348 228 51 92 chr12 141468990 141469310 -2317145 - L1MC5 LINE L1 -40 8002 7609 642 229 109 46 chr12 141469519 141469694 -2316761 - MLT1G LTR MaLR -65 525 340 345 179 0 0 chr12 141470682 141470738 -2315717 - Tigger4(Zombi) DNA MER2_type 0 2731 2676 3097 140 81 10 chr12 141474128 141474620 -2311835 + MER1A DNA MER1_type 1 527 0 213 246 0 62 chr12 141475107 141475172 -2311283 - L2 LINE L2 0 3313 3253 573 327 152 27 chr12 141475193 141475267 -2311188 + L2 LINE L2 2303 2366 -948 1752 196 34 28 chr12 141475267 141475654 -2310801 - MLT1B LTR MaLR 0 390 2 573 327 152 27 chr12 141475654 141476179 -2310276 + L2 LINE L2 2366 2977 -337 234 282 99 0 chr12 141476226 141476297 -2310158 - L2 LINE L2 -42 3230 3153 5251 139 12 8 chr12 141477311 141478152 -2308303 + L1PB4 LINE L1 5309 6152 -4 751 22 11 0 chr12 141478309 141478398 -2308057 - L1PA5 LINE L1 -201 5953 5864 1578 27 5 0 chr12 141478398 141478580 -2307875 + L1PA5 LINE L1 5966 6150 -4 6499 223 77 35 chr12 141478687 141479879 -2306576 - L1MDa LINE L1 -2751 3789 2649 1030 184 44 10 chr12 141479879 141480085 -2306370 - L1PB3 LINE L1 -1 6153 5941 6499 223 77 35 chr12 141480085 141482266 -2304189 - L1MDa LINE L1 -3891 2649 17 23 54 0 0 chr12 141482404 141482441 -2304014 + AT_rich Low_complexity Low_complexity 1 37 0 306 299 58 36 chr12 141483620 141483757 -2302698 - LTR33 LTR ERVL -90 431 292 422 325 67 10 chr12 141483926 141484135 -2302320 + L2 LINE L2 2741 2961 -353 907 146 57 6 chr12 141484135 141484293 -2302162 + MER20 DNA MER1_type 1 166 -53 362 323 18 26 chr12 141484319 141484545 -2301910 + L2 LINE L2 2954 3177 -136 1548 74 23 14 chr12 141484573 141484790 -2301665 - L1MA6 LINE L1 -309 5991 5773 2469 66 3 0 chr12 141484795 141485112 -2301343 - L1PA13 LINE L1 -19 6144 5827 749 53 0 0 chr12 141485112 141485206 -2301249 + L1PA13 LINE L1 5721 5814 -360 * 3036 155 16 7 chr12 141485202 141485923 -2300532 - L1MA6 LINE L1 -515 5785 5058 353 331 8 8 chr12 141485931 141486055 -2300400 + L2 LINE L2 3190 3313 0 248 196 109 54 chr12 141487413 141487505 -2298950 - MER112 DNA MER1_type -32 228 132 720 250 57 22 chr12 141487536 141487764 -2298691 - MLT1I LTR MaLR 0 409 174 277 279 94 75 chr12 141488613 141488814 -2297641 - MLT2E LTR ERVL -421 207 3 450 297 154 10 chr12 141488894 141489187 -2297268 + MER113 DNA MER1_type? 103 437 -84 813 233 146 40 chr12 141490223 141490700 -2295755 + MLT1E LTR MaLR 21 653 -1 * 1326 219 20 79 chr12 141490695 141491102 -2295353 + LTR9 LTR ERV1 1 383 -229 702 251 101 36 chr12 141491090 141491337 -2295118 + LTR19C LTR ERV1 488 750 -29 * 338 294 77 60 chr12 141492136 141492384 -2294071 + LTR33 LTR ERVL 35 286 -235 329 241 11 0 chr12 141492436 141492523 -2293932 + LTR33 LTR ERVL 426 513 -8 1451 154 77 46 chr12 141492781 141493066 -2293389 + AluJo SINE Alu 1 294 -18 269 216 27 0 chr12 141493460 141493534 -2292921 - MIR SINE MIR -121 141 66 2088 114 3 26 chr12 141493631 141494117 -2292338 + AluSq SINE Alu 1 479 0 195 162 0 0 chr12 141494116 141494153 -2292302 + GA-rich Low_complexity Low_complexity 3 39 0 282 323 31 15 chr12 141494655 141494668 -2291787 + L2 LINE L2 3178 3189 -124 225 0 0 0 chr12 141494668 141494693 -2291762 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 282 323 31 15 chr12 141494693 141494809 -2291646 + L2 LINE L2 3189 3309 -4 257 300 0 0 chr12 141494852 141494922 -2291533 - L3 LINE CR1 -8 1569 1500 32 0 0 0 chr12 141495007 141495039 -2291416 + AT_rich Low_complexity Low_complexity 1 32 0 1851 178 7 0 chr12 141496617 141496920 -2289535 + AluJb SINE Alu 4 308 -4 1982 122 52 52 chr12 141497590 141497633 -2288822 - MER61A LTR ERV1 0 343 301 2447 88 0 3 chr12 141497633 141497940 -2288515 + AluY SINE Alu 1 306 -5 1982 122 52 52 chr12 141497940 141498239 -2288216 - MER61A LTR ERV1 -41 302 1 754 168 23 0 chr12 141498339 141498470 -2287985 - AluSq/x SINE Alu -178 134 1 2287 119 0 0 chr12 141498843 141499145 -2287310 + AluSx SINE Alu 1 302 -10 331 309 81 8 chr12 141499261 141499384 -2287071 + MIR SINE MIR 18 149 -113 227 270 159 0 chr12 141499527 141499590 -2286865 - MLT1L LTR MaLR -221 394 322 2483 70 10 0 chr12 141499704 141500005 -2286450 - AluY SINE Alu -7 304 1 22 35 0 0 chr12 141500456 141500485 -2285970 + AT_rich Low_complexity Low_complexity 1 29 0 247 185 93 0 chr12 141501077 141501131 -2285324 + MLT1K LTR MaLR 513 571 -17 977 181 0 0 chr12 141501135 141501290 -2285165 + AluSq SINE Alu 127 281 -32 189 94 0 0 chr12 141501291 141501323 -2285132 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 663 284 123 69 chr12 141501663 141502012 -2284443 - MLT1J2 LTR MaLR -46 404 37 1587 175 57 87 chr12 141502143 141502544 -2283911 - MLT1B LTR MaLR -1 389 1 323 364 35 35 chr12 141502545 141502743 -2283712 + MLT1K LTR MaLR 23 220 -368 224 271 0 0 chr12 141502753 141502812 -2283643 + MIR SINE MIR 91 149 -59 240 276 26 13 chr12 141502924 141503000 -2283455 + MLT1K LTR MaLR 193 269 -319 1129 230 56 70 chr12 141503014 141503434 -2283021 - MLT1C LTR MaLR 0 467 46 333 258 108 25 chr12 141503486 141503606 -2282849 + MLT1K LTR MaLR 278 407 -181 489 202 29 10 chr12 141503803 141503907 -2282548 + LTR67 LTR ERVL 452 557 0 416 271 49 35 chr12 141504170 141504314 -2282141 + MIR SINE MIR 104 249 -13 429 259 18 18 chr12 141504407 141504519 -2281936 + MER81 DNA DNA 3 114 0 499 328 28 50 chr12 141504572 141504929 -2281526 - MLT1K LTR MaLR -15 573 225 900 136 0 34 chr12 141504944 141505091 -2281364 - AluJo SINE Alu -170 142 1 285 307 58 35 chr12 141505263 141505596 -2280859 - MLT1K LTR MaLR -34 554 168 1841 164 3 10 chr12 141506806 141507110 -2279345 - AluJb SINE Alu -10 302 1 639 268 76 18 chr12 141507303 141507527 -2278928 + MIR SINE MIR 1 237 -25 2670 118 3 0 chr12 141507528 141507902 -2278553 + THE1C LTR MaLR 1 375 0 1763 104 4 0 chr12 141507909 141508150 -2278305 - THE1C LTR MaLR -133 242 1 2011 137 0 14 chr12 141509038 141509330 -2277125 + AluSx SINE Alu 1 288 -24 328 343 0 34 chr12 141509372 141509518 -2276937 - MARNA DNA Mariner -14 572 432 1193 223 147 31 chr12 141509779 141510228 -2276227 + MLT1D LTR MaLR 5 505 0 250 286 175 48 chr12 141510674 141510943 -2275512 - L2 LINE L2 -44 3269 2967 2003 284 77 35 chr12 141510980 141511806 -2274649 - L2 LINE L2 -464 2850 1977 2023 146 0 16 chr12 141511806 141512122 -2274333 - AluSx SINE Alu -1 311 1 2003 284 77 35 chr12 141512122 141512258 -2274197 - L2 LINE L2 -1337 1977 1848 381 206 9 19 chr12 141512260 141512367 -2274088 + L1M4 LINE L1 1531 1636 -4906 673 115 0 0 chr12 141512438 141512534 -2273921 + L1MA3 LINE L1 6210 6305 0 268 269 163 35 chr12 141512885 141513168 -2273287 + L2 LINE L2 2550 2868 -446 222 324 22 43 chr12 141513159 141513245 -2273210 + L2 LINE L2 2828 2914 -399 * 2083 126 7 0 chr12 141513245 141513538 -2272917 + AluSx SINE Alu 1 295 -17 222 324 22 43 chr12 141513538 141513636 -2272819 + L2 LINE L2 2914 3008 -305 308 215 15 0 chr12 141513972 141514037 -2272418 + MLT1I LTR MaLR 66 131 -278 399 217 0 100 chr12 141514952 141515020 -2271435 - L1MA9 LINE L1 -38 6274 6221 2296 102 0 3 chr12 141515020 141515314 -2271141 + AluSx SINE Alu 6 298 -14 399 217 0 100 chr12 141515314 141515365 -2271090 - L1MA9 LINE L1 -90 6222 6167 2176 133 0 0 chr12 141515606 141515906 -2270549 - AluSq SINE Alu -11 302 3 230 267 40 0 chr12 141516724 141516799 -2269656 - MER112 DNA MER1_type -27 233 156 305 129 0 16 chr12 141516844 141516855 -2269600 + (GGATG)n Simple_repeat Simple_repeat 5 15 -50 2297 148 57 34 chr12 141516855 141517273 -2269182 + MSTA LTR MaLR 1 428 0 305 129 0 16 chr12 141517273 141517323 -2269132 + (GGATG)n Simple_repeat Simple_repeat 15 65 0 504 312 35 26 chr12 141518953 141519184 -2267271 - MIR SINE MIR -21 241 9 329 203 129 36 chr12 141520370 141520599 -2265856 - MER76 LTR ERV -223 465 129 2333 99 48 22 chr12 141521616 141521971 -2264484 - THE1B LTR MaLR 0 364 1 215 267 76 61 chr12 141522187 141522318 -2264137 + L2 LINE L2 3181 3313 0 1818 200 30 5 chr12 141522611 141522981 -2263474 + MLT1B LTR MaLR 1 379 -11 317 195 195 0 chr12 141523070 141523157 -2263298 - L1MA10 LINE L1 -2 6332 6229 2227 115 7 0 chr12 141523546 141523841 -2262614 - AluSx SINE Alu -15 297 1 601 300 97 21 chr12 141523973 141524356 -2262099 + MLT1K LTR MaLR 139 550 -38 26 0 0 0 chr12 141524457 141524483 -2261972 + AT_rich Low_complexity Low_complexity 1 26 0 1729 36 5 18 chr12 141524969 141525192 -2261263 - L1PA4 LINE L1 0 6155 5936 431 300 154 10 chr12 141525888 141526181 -2260274 - MER113 DNA MER1_type? -84 437 103 277 279 94 75 chr12 141526261 141526462 -2259993 + MLT2E LTR ERVL 3 207 -421 720 250 57 22 chr12 141527312 141527540 -2258915 + MLT1I LTR MaLR 174 409 0 248 196 109 54 chr12 141527571 141527663 -2258792 + MER112 DNA MER1_type 132 228 -32 353 331 8 8 chr12 141529021 141529145 -2257310 - L2 LINE L2 0 3313 3190 3036 155 16 7 chr12 141529153 141529874 -2256581 + L1MA6 LINE L1 5058 5785 -515 800 50 0 0 chr12 141529870 141529970 -2256485 - L1PA13 LINE L1 -360 5814 5715 * 2469 66 3 0 chr12 141529970 141530281 -2256174 + L1PA13 LINE L1 5827 6144 -19 1548 74 23 14 chr12 141530286 141530503 -2255952 + L1MA6 LINE L1 5773 5991 -309 362 323 18 26 chr12 141530531 141530757 -2255698 - L2 LINE L2 -136 3177 2954 929 151 50 6 chr12 141530783 141530942 -2255513 - MER20 DNA MER1_type -53 166 1 422 325 67 10 chr12 141530942 141531151 -2255304 - L2 LINE L2 -353 2961 2741 306 299 58 36 chr12 141531320 141531457 -2254998 + LTR33 LTR ERVL 292 431 -90 23 54 0 0 chr12 141532636 141532673 -2253782 + AT_rich Low_complexity Low_complexity 1 37 0 6407 225 79 35 chr12 141532811 141534992 -2251463 + L1MDa LINE L1 17 2649 -3891 1030 184 44 10 chr12 141534992 141535198 -2251257 + L1PB3 LINE L1 5941 6153 -1 6407 225 79 35 chr12 141535198 141536391 -2250064 + L1MDa LINE L1 2649 3789 -2751 3290 24 3 0 chr12 141536498 141536877 -2249578 - L1PA5 LINE L1 -4 6150 5771 911 10 0 0 chr12 141536877 141536978 -2249477 + L1PA5 LINE L1 5672 5772 -383 349 262 29 19 chr12 141537420 141537523 -2248932 + MLT1K LTR MaLR 447 550 -38 2099 145 6 0 chr12 141539008 141539319 -2247136 - AluSq SINE Alu 0 313 1 764 274 89 25 chr12 141539511 141539825 -2246630 - MLT1K LTR MaLR -2 586 253 1073 271 52 14 chr12 141541077 141541117 -2245338 - L1MB7 LINE L1 -19 6165 6128 1734 143 13 53 chr12 141541117 141541418 -2245037 - AluJo SINE Alu -23 289 1 1073 271 52 14 chr12 141541418 141541724 -2244731 - L1MB7 LINE L1 -56 6128 5806 297 247 16 0 chr12 141541723 141541820 -2244635 - L1MB7 LINE L1 -601 5567 5471 * 22 0 0 0 chr12 141541835 141541857 -2244598 + AT_rich Low_complexity Low_complexity 1 22 0 1242 104 0 0 chr12 141542210 141542491 -2243964 + (TCTCTG)n Simple_repeat Simple_repeat 1 281 0 21 36 0 0 chr12 141543460 141543488 -2242967 + AT_rich Low_complexity Low_complexity 1 28 0 282 290 20 10 chr12 141544142 141544242 -2242213 + L1ME4a LINE L1 4919 5019 -1127 743 202 131 11 chr12 141544682 141544865 -2241590 - MER20 DNA MER1_type -13 206 2 398 268 44 5 chr12 141544874 141545010 -2241445 + L1ME4a LINE L1 5506 5659 -462 1871 263 88 9 chr12 141545303 141545827 -2240628 - MLT1F1 LTR MaLR -2 565 1 291 239 33 11 chr12 141545827 141545919 -2240536 + L1ME4a LINE L1 6028 6121 0 207 167 74 0 chr12 141546223 141546277 -2240178 + L2 LINE L2 2301 2358 -956 190 333 110 35 chr12 141546734 141546989 -2239466 - L2 LINE L2 0 3272 2999 529 284 88 64 chr12 141548532 141548954 -2237501 - MLT1K LTR MaLR -30 558 127 250 277 77 46 chr12 141549483 141549613 -2236842 + MIR SINE MIR 16 149 -59 558 257 70 0 chr12 141549933 141550120 -2236335 - MLT1G LTR MaLR -40 550 351 369 0 0 0 chr12 141550627 141550668 -2235787 + (TG)n Simple_repeat Simple_repeat 2 42 0 259 257 57 80 chr12 141551029 141551129 -2235326 - MIR SINE MIR -18 244 148 2477 57 0 3 chr12 141551129 141551429 -2235026 - AluY SINE Alu -12 299 1 259 257 57 80 chr12 141551429 141551503 -2234952 - MIR SINE MIR -114 148 74 1991 114 0 0 chr12 141551568 141551831 -2234624 + AluSx SINE Alu 41 303 -9 208 259 19 0 chr12 141551916 141551970 -2234485 + MIR SINE MIR 94 148 -60 507 279 119 45 chr12 141552180 141552407 -2234048 - L2 LINE L2 -47 3266 3057 2245 128 0 0 chr12 141552407 141552705 -2233750 + AluSx SINE Alu 1 298 -14 507 279 119 45 chr12 141552705 141553048 -2233407 - L2 LINE L2 -256 3057 2593 226 176 47 118 chr12 141553059 141553120 -2233335 - MLT1K LTR MaLR -15 573 518 2070 116 39 3 chr12 141553120 141553404 -2233051 + AluSx SINE Alu 1 294 -18 226 176 47 118 chr12 141553404 141553427 -2233028 - MLT1K LTR MaLR -70 518 495 1486 170 42 3 chr12 141554196 141554361 -2232094 - AluJo SINE Alu -16 296 114 240 35 0 0 chr12 141554361 141554390 -2232065 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1486 170 42 3 chr12 141554390 141554507 -2231948 - AluJo SINE Alu -198 114 3 791 194 0 0 chr12 141554521 141554650 -2231805 - FLAM_C SINE Alu -3 130 2 231 294 28 55 chr12 141554722 141554831 -2231624 + MIR3 SINE MIR 103 208 0 511 136 0 19 chr12 141554927 141555030 -2231425 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 242 159 23 0 chr12 141555033 141555077 -2231378 + CT-rich Low_complexity Low_complexity 3 47 0 1188 196 111 19 chr12 141555144 141555471 -2230984 + MLT1A1 LTR MaLR 1 365 0 2309 82 0 19 chr12 141556454 141556769 -2229686 + AluSx SINE Alu 1 309 -3 305 313 170 44 chr12 141558399 141558811 -2227644 + L2 LINE L2 2804 3267 -5 348 299 171 56 chr12 141559260 141559634 -2226821 - MLT1J2 LTR MaLR -29 421 1 280 230 103 110 chr12 141560195 141560417 -2226038 - MLT1J2 LTR MaLR -154 255 20 430 256 103 26 chr12 141560870 141561065 -2225390 + MER113 DNA MER1_type? 192 401 -120 521 236 73 11 chr12 141562104 141562282 -2224173 + MER5A DNA MER1_type 1 189 0 34 55 0 0 chr12 141563602 141563657 -2222798 + GC_rich Low_complexity Low_complexity 1 55 0 24 124 0 0 chr12 141563690 141563868 -2222587 + GC_rich Low_complexity Low_complexity 1 178 0 186 209 0 0 chr12 141564452 141564495 -2221960 + (TG)n Simple_repeat Simple_repeat 1 43 0 195 100 0 0 chr12 141566416 141566446 -2220009 + (CA)n Simple_repeat Simple_repeat 2 31 0 1198 110 8 2 chr12 141568069 141568491 -2217964 + (TCCA)n Simple_repeat Simple_repeat 1 604 0 251 350 8 60 chr12 141568766 141568883 -2217572 - L2 LINE L2 -24 3248 3138 295 194 137 79 chr12 141569052 141569191 -2217264 - MLT1D LTR MaLR -356 149 1 397 320 140 22 chr12 141569453 141569681 -2216774 - MIR SINE MIR 0 262 8 189 283 75 0 chr12 141569800 141569853 -2216602 + L2 LINE L2 3216 3272 0 1520 185 44 10 chr12 141571319 141571442 -2215013 + AluJb SINE Alu 1 118 -194 186 71 0 0 chr12 141571442 141571470 -2214985 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1520 185 44 10 chr12 141571470 141571643 -2214812 + AluJb SINE Alu 118 307 -5 311 323 101 32 chr12 141572469 141572844 -2213611 + L3 LINE CR1 568 968 -609 2175 145 29 0 chr12 141573203 141573548 -2212907 + THE1B LTR MaLR 10 364 0 249 353 169 16 chr12 141573906 141574161 -2212294 + L3 LINE CR1 1058 1351 -226 528 271 65 0 chr12 141574256 141574411 -2212044 - MIR SINE MIR -12 250 86 2017 115 0 0 chr12 141574428 141574706 -2211749 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr12 141574706 141574729 -2211726 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 255 293 0 0 chr12 141575058 141575116 -2211339 + polypurine Low_complexity Low_complexity 3 60 0 267 239 68 11 chr12 141575628 141575716 -2210739 - L1ME4a LINE L1 -68 6053 5961 290 275 161 28 chr12 141575872 141576083 -2210372 - L1ME4a LINE L1 -366 5755 5517 285 293 136 14 chr12 141576763 141576903 -2209552 - L2 LINE L2 0 3272 3116 302 284 11 0 chr12 141578080 141578168 -2208287 - MLT1I LTR MaLR -3 406 318 378 290 65 26 chr12 141578175 141578330 -2208125 - MLT1J2 LTR MaLR -223 227 67 854 279 92 61 chr12 141578365 141578873 -2207582 - MLT1K LTR MaLR -63 525 2 1928 129 0 20 chr12 141578890 141579185 -2207270 - AluSx SINE Alu -21 291 3 34 0 0 0 chr12 141579982 141580016 -2206439 + AT_rich Low_complexity Low_complexity 1 34 0 330 289 119 54 chr12 141580192 141580535 -2205920 + Charlie8 DNA MER1_type 37 406 -112 2758 73 24 11 chr12 141580535 141580905 -2205550 - THE1C LTR MaLR 0 375 1 330 289 119 54 chr12 141580905 141580923 -2205532 + Charlie8 DNA MER1_type 406 421 -97 369 315 58 51 chr12 141581077 141581353 -2205102 + Charlie2 DNA MER1_type 34 311 -2471 2155 187 48 40 chr12 141581383 141582009 -2204446 + Charlie2 DNA MER1_type 2232 2862 0 660 277 0 23 chr12 141582019 141582196 -2204259 + MER5B DNA MER1_type 2 174 -4 213 273 0 0 chr12 141582248 141582292 -2204163 + MER5B DNA MER1_type 1 44 -134 3528 236 23 28 chr12 141582319 141583452 -2203003 - L1ME1 LINE L1 -8 6953 5820 1108 188 0 0 chr12 141583461 141583653 -2202802 + AluJo SINE Alu 91 282 -30 5962 265 63 39 chr12 141583654 141584861 -2201594 - L1ME1 LINE L1 -1110 5831 4654 1333 114 40 4 chr12 141584861 141585088 -2201367 - L1MA5A LINE L1 -5 6292 6058 5962 265 63 39 chr12 141585088 141587907 -2198548 - L1ME1 LINE L1 -2287 4654 1764 409 282 64 10 chr12 141588041 141588243 -2198212 - L1ME1 LINE L1 -6179 244 32 351 234 52 2 chr12 141588282 141588380 -2198075 - MER5B DNA MER1_type -75 103 12 711 270 54 5 chr12 141588474 141588696 -2197759 - LTR33A LTR ERVL 0 523 291 2024 101 31 0 chr12 141588734 141589022 -2197433 + AluSx SINE Alu 1 297 -15 392 327 61 6 chr12 141589061 141589223 -2197232 - LTR33 LTR ERVL -314 207 37 268 307 128 22 chr12 141589223 141589402 -2197053 - MER110 LTR ERV1 0 491 294 268 219 156 94 chr12 141589509 141589669 -2196786 - MER110A LTR ERV1 -298 170 1 234 0 0 0 chr12 141589947 141589973 -2196482 + (TC)n Simple_repeat Simple_repeat 2 27 0 214 227 11 23 chr12 141590373 141590461 -2195994 + (TAA)n Simple_repeat Simple_repeat 2 88 0 1173 280 111 35 chr12 141590585 141591106 -2195349 + MLT1K LTR MaLR 25 585 -3 356 272 63 47 chr12 141591673 141591864 -2194591 + Charlie8 DNA MER1_type 1 194 -2223 376 176 15 0 chr12 141593913 141593981 -2192474 + MLT1A1 LTR MaLR 289 357 -8 851 283 40 43 chr12 141594088 141594330 -2192125 - MER58B DNA MER1_type -2092 328 86 1981 75 93 0 chr12 141594330 141594609 -2191846 + AluSp SINE Alu 3 307 -6 851 283 40 43 chr12 141594609 141594695 -2191760 - MER58B DNA MER1_type -2334 86 1 22 0 0 54 chr12 141594695 141594715 -2191740 + AT_rich Low_complexity Low_complexity 1 20 -15 863 133 21 0 chr12 141594715 141594858 -2191597 - L1MA9 LINE L1 -5 6307 6162 22 0 0 54 chr12 141594858 141594874 -2191581 + AT_rich Low_complexity Low_complexity 20 35 0 910 110 0 0 chr12 141594877 141595004 -2191451 - AluSg/x SINE Alu -12 298 172 1049 211 46 4 chr12 141595004 141595265 -2191190 - L1MA8 LINE L1 0 6291 6020 420 268 0 0 chr12 141597595 141597677 -2188778 + MER63 DNA MER1_type 978 1059 -2 675 264 63 53 chr12 141597752 141598055 -2188400 - MLT1K LTR MaLR 0 588 283 532 244 16 16 chr12 141598343 141598470 -2187985 - MER21B LTR ERV1 -124 739 613 573 257 76 85 chr12 141598549 141598891 -2187564 - MER21B LTR ERV1 -263 600 262 1688 142 23 0 chr12 141599025 141599285 -2187170 + AluJo SINE Alu 6 271 -41 229 366 0 0 chr12 141599339 141599421 -2187034 - MER21B LTR ERV1 -779 84 3 1341 212 58 18 chr12 141599661 141599987 -2186468 - MER2 DNA MER2_type 0 345 7 248 261 33 33 chr12 141600917 141601018 -2185437 - L1ME1 LINE L1 -4 6162 6059 228 243 126 27 chr12 141601390 141601501 -2184954 - L1ME1 LINE L1 -109 6057 5936 4302 187 24 54 chr12 141601531 141602018 -2184437 - L1MA9 LINE L1 -2 6310 5810 1705 160 0 38 chr12 141602018 141602337 -2184118 - AluJb SINE Alu -5 307 1 4302 187 24 54 chr12 141602337 141602689 -2183766 - L1MA9 LINE L1 -502 5810 5503 3070 34 3 21 chr12 141602689 141603068 -2183387 - L1PA4 LINE L1 0 6155 5784 4302 187 24 54 chr12 141603068 141603221 -2183234 - L1MA9 LINE L1 -809 5503 5347 477 320 103 0 chr12 141603396 141603590 -2182865 + MIR SINE MIR 31 244 -18 322 197 53 0 chr12 141603639 141603715 -2182740 + L2 LINE L2 2648 2727 -587 268 251 119 60 chr12 141603939 141604277 -2182178 + L2 LINE L2 2841 3205 -108 821 260 93 60 chr12 141604520 141604851 -2181604 - MLT1K LTR MaLR -28 560 213 1158 255 115 45 chr12 141604851 141605381 -2181074 - MLT1F1 LTR MaLR 0 567 1 821 260 93 60 chr12 141605381 141605434 -2181021 - MLT1K LTR MaLR -375 213 163 3181 149 56 87 chr12 141607080 141607529 -2178926 - LTR8A LTR ERV1 0 727 309 1981 112 27 0 chr12 141607529 141607823 -2178632 - AluSx SINE Alu -10 302 1 3181 149 56 87 chr12 141607823 141608123 -2178332 - LTR8A LTR ERV1 -418 309 1 2483 103 11 21 chr12 141608286 141608665 -2177790 + THE1C LTR MaLR 1 375 0 195 204 0 0 chr12 141608714 141608758 -2177697 + (TA)n Simple_repeat Simple_repeat 1 44 0 720 214 23 139 chr12 141608760 141609105 -2177350 - LTR37B LTR ERV1 -158 310 6 467 272 92 44 chr12 141609134 141609283 -2177172 - Charlie8 DNA MER1_type -60 270 107 1749 206 60 86 chr12 141609283 141609852 -2176603 - MLT2B3 LTR ERVL 0 554 1 467 272 92 44 chr12 141609852 141609908 -2176547 - Charlie8 DNA MER1_type -223 107 55 571 77 13 0 chr12 141609928 141610006 -2176449 + MADE1 DNA Mariner 2 80 0 * 871 230 17 50 chr12 141610006 141610242 -2176213 - MLT1A1 LTR MaLR -27 338 111 351 259 91 21 chr12 141612177 141612320 -2174135 - MLT1A1 LTR MaLR -212 153 1 481 281 24 12 chr12 141612402 141612566 -2173889 + MIR SINE MIR 2 167 -95 426 310 113 0 chr12 141612862 141613065 -2173390 + MIR SINE MIR 22 247 -15 861 126 0 0 chr12 141614113 141614240 -2172215 + AluSg/x SINE Alu 172 298 -12 764 164 13 20 chr12 141614258 141614410 -2172045 + L1MA9 LINE L1 6162 6312 0 798 289 40 43 chr12 141614421 141614507 -2171948 + MER58B DNA MER1_type 1 86 -2334 1834 96 89 4 chr12 141614507 141614788 -2171667 - AluSp SINE Alu -6 307 3 798 289 40 43 chr12 141614788 141615030 -2171425 + MER58B DNA MER1_type 86 328 -13 673 216 16 4 chr12 141615137 141615310 -2171145 - MLT1A1 LTR MaLR -8 357 194 240 183 67 17 chr12 141615959 141616019 -2170436 + MIR SINE MIR 110 172 -90 228 250 159 11 chr12 141616217 141616305 -2170150 - MER5A DNA MER1_type -58 131 31 1795 156 7 3 chr12 141616495 141616802 -2169653 - AluJo SINE Alu -4 308 1 351 259 91 21 chr12 141617973 141618116 -2168339 - MLT1A1 LTR MaLR -212 153 1 481 281 24 12 chr12 141618198 141618362 -2168093 + MIR SINE MIR 2 167 -95 426 310 113 0 chr12 141618658 141618861 -2167594 + MIR SINE MIR 22 247 -15 2071 132 0 0 chr12 141620504 141620815 -2165640 - AluJb SINE Alu -1 311 1 720 215 145 3 chr12 141621037 141621331 -2165124 + MER58 DNA MER1_type 1 2420 0 277 261 98 0 chr12 141621473 141621565 -2164890 - L1MC/D LINE L1 -2040 5768 5668 289 372 98 6 chr12 141623214 141623397 -2163058 + MIR SINE MIR 57 256 -6 280 109 55 18 chr12 141624829 141624884 -2161571 + MADE1 DNA Mariner 24 80 0 492 274 104 54 chr12 141625204 141625445 -2161010 - MLT1H1 LTR MaLR -299 256 32 557 283 185 14 chr12 141626085 141626859 -2159596 + L1MEc LINE L1 790 1813 -4583 2918 152 23 17 chr12 141626908 141627383 -2159072 + MER66A LTR ERV1 1 478 0 1725 171 0 38 chr12 141628954 141629270 -2157185 - AluJo SINE Alu -8 304 1 21 36 0 0 chr12 141629820 141629848 -2156607 + AT_rich Low_complexity Low_complexity 1 28 0 922 271 109 40 chr12 141630006 141630327 -2156128 + MER113 DNA MER1_type? 8 374 -147 1689 159 0 7 chr12 141630327 141630622 -2155833 + AluJo SINE Alu 20 312 0 922 271 109 40 chr12 141630622 141630776 -2155679 + MER113 DNA MER1_type? 374 516 -5 2313 50 0 56 chr12 141630829 141631151 -2155304 + AluY SINE Alu 1 304 -7 222 316 0 0 chr12 141631156 141631213 -2155242 + MIR SINE MIR 206 262 0 31 44 0 0 chr12 141631213 141631258 -2155197 + AT_rich Low_complexity Low_complexity 1 45 0 215 284 127 66 chr12 141632178 141632375 -2154080 - MIR SINE MIR -15 247 39 25 75 0 0 chr12 141632509 141632562 -2153893 + AT_rich Low_complexity Low_complexity 1 53 0 277 144 155 31 chr12 141632983 141633080 -2153375 + Charlie7 DNA MER1_type 2476 2584 -28 250 244 77 103 chr12 141633434 141633511 -2152944 - L1MC/D LINE L1 -462 5659 5582 2038 109 3 23 chr12 141633511 141633648 -2152807 + AluSx SINE Alu 1 139 -173 2182 108 13 0 chr12 141633648 141633954 -2152501 + AluSg SINE Alu 1 310 0 2038 109 3 23 chr12 141633954 141634120 -2152335 + AluSx SINE Alu 139 298 -14 250 244 77 103 chr12 141634120 141634498 -2151957 - L1MC/D LINE L1 -539 5582 5211 279 79 0 0 chr12 141636536 141636574 -2149881 + (CA)n Simple_repeat Simple_repeat 2 39 0 1913 152 0 0 chr12 141637479 141637775 -2148680 + AluJb SINE Alu 1 296 -16 2030 216 41 47 chr12 141638420 141638979 -2147476 - LTR38 LTR ERV1 0 556 1 1749 134 0 75 chr12 141639431 141639751 -2146704 - AluJb SINE Alu -16 296 1 231 146 24 0 chr12 141640592 141640633 -2145822 - MER58 DNA MER1_type -3 2417 2376 29 78 0 0 chr12 141640668 141640732 -2145723 + AT_rich Low_complexity Low_complexity 1 64 0 335 303 0 20 chr12 141640759 141640858 -2145597 + CT-rich Low_complexity Low_complexity 1 97 0 1757 131 3 61 chr12 141640883 141641211 -2145244 + AluSc SINE Alu 1 309 0 299 271 29 57 chr12 141641799 141641939 -2144516 + MLT1K LTR MaLR 28 163 -425 1443 172 9 29 chr12 141642327 141642661 -2143794 - MER4A LTR ERV1 -18 646 261 535 111 30 40 chr12 141642661 141642760 -2143695 - MER4A LTR ERV1 -566 98 1 263 191 48 0 chr12 141642828 141642891 -2143564 + (TATG)n Simple_repeat Simple_repeat 3 68 0 180 375 0 12 chr12 141642891 141642971 -2143484 - MIR SINE MIR -58 204 126 357 243 28 28 chr12 141643911 141644018 -2142437 - MLT1L LTR MaLR -2 613 507 1320 102 0 2 chr12 141644239 141644256 -2142199 + (TCCC)n Simple_repeat Simple_repeat 1 379 0 1320 92 0 0 chr12 141644256 141644619 -2141836 + (TCCC)n Simple_repeat Simple_repeat 1 363 0 465 159 9 26 chr12 141644747 141644860 -2141595 + CT-rich Low_complexity Low_complexity 2 112 0 562 356 11 0 chr12 141646163 141646354 -2140101 + MIR SINE MIR 70 262 0 249 234 106 92 chr12 141647110 141647251 -2139204 - MLT1J2 LTR MaLR -16 434 292 251 303 61 0 chr12 141647292 141647391 -2139064 - MLT1I LTR MaLR -217 192 88 1673 158 14 3 chr12 141647416 141647701 -2138754 - AluJo SINE Alu -22 290 3 1980 104 16 32 chr12 141648166 141648475 -2137980 + AluSx SINE Alu 1 304 -8 1565 188 23 48 chr12 141648722 141649073 -2137382 - MLT1A2 LTR MaLR -32 342 1 562 262 51 33 chr12 141649345 141649559 -2136896 + MIR SINE MIR 42 259 -3 403 237 153 17 chr12 141649650 141649768 -2136687 - MIR SINE MIR -74 188 55 1462 201 8 0 chr12 141649916 141650179 -2136276 + MER68 LTR ERV1 1 265 -297 2498 155 36 0 chr12 141650179 141650592 -2135863 - MSTA LTR MaLR 0 428 1 1589 153 120 9 chr12 141650600 141650926 -2135529 + THE1C LTR MaLR 14 375 0 1169 257 17 3 chr12 141650937 141651229 -2135226 + MER68 LTR ERV1 260 555 -7 602 311 63 17 chr12 141651261 141651563 -2134892 + L2 LINE L2 2997 3312 -1 285 333 131 0 chr12 141651649 141651802 -2134653 + MER5A DNA MER1_type 17 189 0 286 317 30 0 chr12 141652247 141652348 -2134107 - MER103 DNA DNA -60 106 3 773 196 0 0 chr12 141652599 141652732 -2133723 + FLAM_A SINE Alu 1 133 0 232 325 173 7 chr12 141653024 141653205 -2133250 + MIR3 SINE MIR 5 207 -55 245 236 216 61 chr12 141653770 141653918 -2132537 - MIR SINE MIR -6 256 86 180 371 82 21 chr12 141654222 141654319 -2132136 - L2 LINE L2 -19 3294 3192 2238 124 0 0 chr12 141654435 141654742 -2131713 - AluJo SINE Alu -4 308 2 369 329 55 34 chr12 141655491 141655728 -2130727 + L1M4 LINE L1 3205 3446 -2700 213 39 0 0 chr12 141656335 141656361 -2130094 + (CA)n Simple_repeat Simple_repeat 2 27 0 1514 246 63 27 chr12 141657345 141657894 -2128561 + MLT1E2 LTR MaLR 88 626 0 2049 154 21 27 chr12 141659166 141659542 -2126913 - THE1C LTR MaLR -1 374 1 556 211 112 25 chr12 141659650 141659811 -2126644 + MER96 DNA MER1_type 1 175 0 237 316 236 0 chr12 141660153 141660327 -2126128 - MIR SINE MIR 0 262 48 924 225 91 4 chr12 141660364 141660757 -2125698 - MLT1D LTR MaLR 0 505 27 2621 106 8 11 chr12 141660774 141661150 -2125305 - THE1C LTR MaLR 0 375 1 2201 167 92 0 chr12 141661819 141662209 -2124246 + MSTB LTR MaLR 1 426 0 287 252 148 0 chr12 141663001 141663116 -2123339 - MIR SINE MIR -31 231 100 381 252 43 9 chr12 141664150 141664265 -2122190 + MIR SINE MIR 97 215 -47 606 306 24 0 chr12 141664660 141664866 -2121589 - MIR SINE MIR -1 261 51 2105 175 3 3 chr12 141665176 141665542 -2120913 + MER47A DNA MER2_type 1 366 0 2272 102 3 3 chr12 141665674 141665979 -2120476 + AluSg SINE Alu 6 310 0 292 198 28 45 chr12 141666005 141666222 -2120233 + AluJo SINE Alu 9 295 -7 2290 108 39 31 chr12 141666573 141666933 -2119522 + THE1B LTR MaLR 1 363 -1 387 300 60 20 chr12 141667268 141667468 -2118987 - MLT1L LTR MaLR -7 608 401 447 200 0 0 chr12 141667542 141667627 -2118828 - L1M3 LINE L1 -499 5672 5588 3091 187 49 20 chr12 141667684 141667955 -2118500 + L1MB3 LINE L1 5431 5693 -490 2337 133 3 35 chr12 141667955 141668331 -2118124 + THE1B LTR MaLR 1 364 0 3091 187 49 20 chr12 141668331 141668712 -2117743 + L1MB3 LINE L1 5693 6102 -81 608 266 13 62 chr12 141668712 141668938 -2117517 - MER34 LTR ERV1 0 542 328 999 218 69 8 chr12 141668957 141669312 -2117143 - MER66A LTR ERV1 -40 438 27 560 299 51 20 chr12 141669408 141669662 -2116793 - MER34 LTR ERV1 -280 262 1 335 203 38 0 chr12 141669663 141669742 -2116713 + L1MB2 LINE L1 6088 6169 -2 753 289 53 20 chr12 141669852 141670194 -2116261 - MLT1I LTR MaLR -42 367 15 430 185 104 15 chr12 141670246 141670381 -2116074 - LTR37A LTR ERV1 0 426 280 462 245 0 10 chr12 141670952 141671054 -2115401 - LTR33 LTR ERVL -355 166 66 220 290 16 8 chr12 141672301 141672425 -2114030 + CT-rich Low_complexity Low_complexity 4 128 0 402 325 35 10 chr12 141673172 141673375 -2113080 - Charlie8 DNA MER1_type -2152 265 58 1001 162 48 0 chr12 141673444 141673611 -2112844 + MER20 DNA MER1_type 42 216 -3 2092 123 3 7 chr12 141673618 141673920 -2112535 + AluSg SINE Alu 1 301 -9 290 230 40 27 chr12 141674792 141674866 -2111589 + LTR33 LTR ERVL 14 88 -433 438 235 99 72 chr12 141674916 141675137 -2111318 - L1ME3A LINE L1 -110 6060 5834 195 310 52 43 chr12 141676116 141676232 -2110223 - L2 LINE L2 -213 3059 2943 620 305 16 12 chr12 141676663 141676909 -2109546 + L2 LINE L2 2481 2727 -587 547 280 81 6 chr12 141676909 141677158 -2109297 - MLT1G1 LTR MaLR 0 595 241 1594 219 75 92 chr12 141677179 141677763 -2108692 - MER21B LTR ERV1 -126 737 167 1850 187 74 22 chr12 141677763 141678170 -2108285 - MSTA LTR MaLR 0 428 1 1594 219 75 92 chr12 141678170 141678334 -2108121 - MER21B LTR ERV1 -696 167 2 316 284 83 10 chr12 141678344 141678515 -2107940 - MLT1F1 LTR MaLR -301 229 37 2329 78 3 3 chr12 141678578 141678872 -2107583 + AluY SINE Alu 1 294 -17 442 299 219 21 chr12 141678946 141679330 -2107125 + L2 LINE L2 2854 3313 0 2254 148 57 30 chr12 141679465 141679977 -2106478 - MLT2A2 LTR ERVL 0 554 6 599 239 69 37 chr12 141680394 141680612 -2105843 - LTR7 LTR ERV1 0 450 226 431 165 27 27 chr12 141681002 141681307 -2105148 + (CA)n Simple_repeat Simple_repeat 1 305 0 528 158 45 7 chr12 141681333 141681749 -2104706 + (CA)n Simple_repeat Simple_repeat 1 431 0 270 343 45 15 chr12 141684414 141684615 -2101840 - L2 LINE L2 -251 3062 2856 2341 89 3 13 chr12 141684699 141685014 -2101441 - AluSp SINE Alu 0 313 2 318 169 46 0 chr12 141685028 141685093 -2101362 - L1MB3 LINE L1 -7 6176 6109 1014 180 14 38 chr12 141685097 141685308 -2101147 - L1MA4 LINE L1 -273 6027 5822 180 0 0 0 chr12 141685711 141685731 -2100724 + (TA)n Simple_repeat Simple_repeat 2 21 0 522 186 10 0 chr12 141685731 141685828 -2100627 - L1MA4 LINE L1 -511 5780 5683 359 175 109 50 chr12 141685827 141685933 -2100522 - L1M4 LINE L1 -599 5575 5468 * 1148 328 112 16 chr12 141685937 141686905 -2099550 - L2 LINE L2 -532 2782 1722 280 290 45 11 chr12 141687569 141687745 -2098710 + L1ME4a LINE L1 4530 4711 -1435 2039 135 0 46 chr12 141687780 141688105 -2098350 + AluSx SINE Alu 1 310 -2 244 261 14 0 chr12 141688447 141688516 -2097939 + L1ME4a LINE L1 5548 5617 -504 1913 131 32 11 chr12 141688516 141688798 -2097657 + AluJb SINE Alu 1 288 -24 715 173 7 50 chr12 141688969 141689108 -2097347 + FLAM_C SINE Alu 1 133 0 273 224 65 37 chr12 141689252 141689359 -2097096 + L1ME4a LINE L1 6011 6120 -1 216 302 151 0 chr12 141689603 141689689 -2096766 + L2 LINE L2 3174 3272 0 361 317 154 0 chr12 141689723 141689950 -2096505 - MIR SINE MIR 0 262 1 1966 199 133 81 chr12 141691385 141692130 -2094325 + LTR1B LTR ERV1 1 784 -42 270 271 108 8 chr12 141692480 141692609 -2093846 + L2 LINE L2 2577 2718 -596 1184 122 10 34 chr12 141692616 141692821 -2093634 - L1PB2 LINE L1 -325 5826 5627 * 2162 102 3 39 chr12 141692778 141693113 -2093342 + L1PB2 LINE L1 5827 6149 -2 287 267 151 18 chr12 141693128 141693411 -2093044 + L2 LINE L2 2730 3048 -265 206 324 57 0 chr12 141693413 141693518 -2092937 + L2 LINE L2 3203 3313 0 232 305 78 8 chr12 141695060 141695188 -2091267 - MIR3 SINE MIR -23 185 49 2155 122 0 0 chr12 141695660 141695946 -2090509 - AluSx SINE Alu -26 286 1 732 209 7 13 chr12 141696764 141696917 -2089538 - MLT1B LTR MaLR 0 390 239 292 277 71 32 chr12 141697115 141697270 -2089185 - MIR SINE MIR -75 187 27 264 284 23 0 chr12 141697323 141697411 -2089044 + L2 LINE L2 3201 3290 -23 30 77 0 0 chr12 141698100 141698165 -2088290 + AT_rich Low_complexity Low_complexity 1 65 0 357 268 29 122 chr12 141700002 141700235 -2086220 - MIR SINE MIR -35 227 17 1367 153 26 9 chr12 141700235 141700464 -2085991 + MER46A DNA MER2_type 4 236 0 357 268 29 122 chr12 141700464 141700476 -2085979 - MIR SINE MIR -245 17 5 825 306 34 18 chr12 141700655 141700982 -2085473 + MLT1J LTR MaLR 10 341 -170 273 156 78 0 chr12 141701077 141701141 -2085314 - L1MA8 LINE L1 -5 6286 6218 566 277 55 36 chr12 141702034 141702308 -2084147 - MER102b DNA MER1_type 0 341 63 301 275 87 7 chr12 141702624 141702762 -2083693 + MIR SINE MIR 62 210 -52 1664 176 28 7 chr12 141703083 141703372 -2083083 + AluJb SINE Alu 1 295 -17 314 269 0 0 chr12 141703375 141703442 -2083013 + MLT1J LTR MaLR 77 143 -368 1828 109 91 25 chr12 141704476 141704761 -2081694 - AluJb SINE Alu -8 304 1 24 53 0 0 chr12 141704775 141704813 -2081642 + AT_rich Low_complexity Low_complexity 1 38 0 369 276 33 53 chr12 141705161 141705313 -2081142 + Charlie8 DNA MER1_type 1 149 -2268 216 97 0 0 chr12 141705792 141705823 -2080632 + (T)n Simple_repeat Simple_repeat 1 31 0 510 316 40 9 chr12 141707580 141707805 -2078650 - MIR SINE MIR 0 262 31 458 257 139 21 chr12 141708595 141708782 -2077673 - MIR SINE MIR -1 261 53 321 319 103 48 chr12 141709005 141709422 -2077033 + L2 LINE L2 2872 3311 -2 2015 142 7 0 chr12 141710593 141710889 -2075566 - AluSp SINE Alu -15 298 1 594 128 128 58 chr12 141710893 141711049 -2075406 - LTR37A LTR ERV1 -259 167 1 236 251 64 84 chr12 141711049 141711216 -2075239 - MLT1L LTR MaLR -410 205 41 1732 174 10 3 chr12 141711216 141711510 -2074945 - AluJb SINE Alu -14 298 3 236 251 64 84 chr12 141711510 141711545 -2074910 - MLT1L LTR MaLR -574 41 7 297 185 0 0 chr12 141711551 141711616 -2074839 + (CA)n Simple_repeat Simple_repeat 1 65 0 962 182 128 128 chr12 141712009 141712448 -2074007 - LTR45B LTR ERV1 0 489 51 279 287 16 70 chr12 141712656 141712785 -2073670 - Charlie8 DNA MER1_type -2198 219 98 1876 180 0 0 chr12 141712792 141713098 -2073357 + AluJb SINE Alu 1 306 -6 252 338 29 15 chr12 141713927 141714063 -2072392 - MLT1K LTR MaLR -4 584 447 2613 68 11 0 chr12 141715171 141715523 -2070932 + L1PA8 LINE L1 5817 6172 0 2124 83 12 62 chr12 141715525 141715850 -2070605 + AluY SINE Alu 3 311 0 242 318 64 27 chr12 141715850 141715960 -2070495 - MLT1J1 LTR MaLR -293 153 40 1873 160 3 7 chr12 141715963 141716256 -2070199 + AluJo SINE Alu 1 292 -20 253 197 60 111 chr12 141716391 141716508 -2069947 - L1ME LINE L1 -382 5739 5629 200 344 22 0 chr12 141716613 141716703 -2069752 - MIR SINE MIR -61 147 56 2373 115 0 0 chr12 141716936 141717249 -2069206 + AluSq SINE Alu 1 313 0 27 0 0 0 chr12 141717717 141717744 -2068711 + AT_rich Low_complexity Low_complexity 1 27 0 308 388 0 14 chr12 141717792 141717939 -2068516 - L2 LINE L2 -221 3051 2907 454 70 42 0 chr12 141717966 141718037 -2068418 + AluS SINE Alu 2 75 -238 594 274 10 10 chr12 141718265 141718466 -2067989 - L2 LINE L2 -913 2401 2201 2133 179 17 17 chr12 141719162 141719582 -2066873 - L1MB3 LINE L1 -3 6180 5761 1127 227 46 11 chr12 141719582 141719842 -2066613 - L1MB1 LINE L1 -2 6166 5898 1239 252 113 16 chr12 141720472 141720896 -2065559 - LTR37B LTR ERV1 0 468 4 302 283 0 22 chr12 141722941 141723033 -2063422 + MLT1K LTR MaLR 4 93 -495 180 111 0 0 chr12 141723697 141723724 -2062731 + (TG)n Simple_repeat Simple_repeat 1 27 0 1728 161 132 16 chr12 141724465 141724845 -2061610 + MSTA LTR MaLR 5 428 0 349 222 33 22 chr12 141724888 141724978 -2061477 - Charlie8 DNA MER1_type -2232 185 95 1410 160 92 17 chr12 141724988 141725281 -2061174 - L1MA6 LINE L1 -9 6291 5977 856 255 114 32 chr12 141725438 141725563 -2060892 + L1M4 LINE L1 3857 3970 -2176 2339 88 3 3 chr12 141725563 141725868 -2060587 + AluY SINE Alu 1 305 -6 856 255 114 32 chr12 141725868 141726111 -2060344 + L1M4 LINE L1 3970 4255 -1891 2085 113 20 27 chr12 141726183 141726484 -2059971 + AluSx SINE Alu 1 299 -13 207 204 0 0 chr12 141727091 141727135 -2059320 - MER5C DNA MER1_type -3 321 278 293 309 120 34 chr12 141727864 141728039 -2058416 - L2 LINE L2 -17 3296 3107 599 115 0 68 chr12 141728052 141728244 -2058211 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 183 11 17 chr12 141728280 141728455 -2058000 + (TG)n Simple_repeat Simple_repeat 1 174 0 297 180 0 0 chr12 141728470 141728559 -2057896 + (TG)n Simple_repeat Simple_repeat 1 89 0 478 272 187 29 chr12 141728660 141729174 -2057281 - L2 LINE L2 -367 2947 2353 339 353 162 20 chr12 141729444 141729846 -2056609 + L2 LINE L2 2507 2965 -349 956 213 86 5 chr12 141730133 141730330 -2056125 + MER20 DNA MER1_type 7 219 0 613 298 72 35 chr12 141730422 141730741 -2055714 - MER102b DNA MER1_type -10 331 1 1702 210 64 16 chr12 141732101 141732477 -2053978 + MSTD LTR MaLR 3 396 0 322 277 102 48 chr12 141732557 141732723 -2053732 + MER5B DNA MER1_type 4 178 0 562 285 85 57 chr12 141732864 141733319 -2053136 + L2 LINE L2 2556 3035 -278 2387 198 43 43 chr12 141733319 141733879 -2052576 - MER68 LTR ERV1 0 562 3 562 285 85 57 chr12 141733879 141734114 -2052341 + L2 LINE L2 3035 3262 -51 482 279 38 38 chr12 141734125 141734283 -2052172 - MER63A DNA MER1_type -9 201 44 299 180 117 45 chr12 141734363 141734474 -2051981 + MER113 DNA MER1_type? 68 186 -335 420 329 84 20 chr12 141734500 141734749 -2051706 - MLT1J1 LTR MaLR -133 313 49 1012 232 14 66 chr12 141734750 141734813 -2051642 - MLT1D LTR MaLR 0 505 440 2301 115 0 0 chr12 141734813 141735125 -2051330 + AluSq SINE Alu 1 312 -1 1012 232 14 66 chr12 141735125 141735350 -2051105 - MLT1D LTR MaLR -65 440 232 269 226 0 0 chr12 141735447 141735500 -2050955 - MLT1J1 LTR MaLR -128 318 266 942 200 40 49 chr12 141735535 141735760 -2050695 - MLT1D LTR MaLR -282 223 1 715 298 86 26 chr12 141735868 141736288 -2050167 - LTR33 LTR ERVL -62 459 15 576 284 81 5 chr12 141736339 141736561 -2049894 + MER113 DNA MER1_type? 247 485 -36 2278 128 0 6 chr12 141736594 141736907 -2049548 + AluSx SINE Alu 1 311 -1 1697 142 9 77 chr12 141740354 141740679 -2045776 - AluJb SINE Alu -9 303 1 639 218 14 7 chr12 141740759 141740906 -2045549 - MIR SINE MIR -54 208 61 502 265 29 112 chr12 141741252 141741565 -2044890 + MLT1K LTR MaLR 61 347 -241 426 299 79 28 chr12 141741623 141741800 -2044655 - MER91A DNA MER1_type -10 186 1 75 22 0 0 chr12 141741886 141741975 -2044480 + AT_rich Low_complexity Low_complexity 1 89 0 86 35 0 0 chr12 141742073 141742187 -2044268 + AT_rich Low_complexity Low_complexity 1 114 0 350 323 73 24 chr12 141742461 141742625 -2043830 + MER91A DNA MER1_type 1 172 -24 507 171 0 0 chr12 141742769 141742857 -2043598 - MLT1E2 LTR MaLR -3 623 536 1015 179 5 35 chr12 141742866 141743067 -2043388 - MLT1D LTR MaLR -310 195 1 949 218 159 19 chr12 141743837 141744208 -2042247 - LTR37A LTR ERV1 0 426 4 210 163 0 23 chr12 141744364 141744407 -2042048 + CT-rich Low_complexity Low_complexity 3 44 0 596 193 7 44 chr12 141744888 141745162 -2041293 - L1MA9 LINE L1 -1 6311 5996 448 286 47 21 chr12 141745346 141745580 -2040875 - L2 LINE L2 -217 3096 2857 614 200 118 24 chr12 141745720 141745890 -2040565 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr12 141746203 141746225 -2040230 + AT_rich Low_complexity Low_complexity 1 22 0 542 220 71 36 chr12 141746364 141746532 -2039923 - MER5A DNA MER1_type -1 188 15 573 316 72 21 chr12 141746584 141746919 -2039536 - MLT1J LTR MaLR -6 505 154 601 268 57 16 chr12 141746922 141747116 -2039339 - MER3 DNA MER1_type -7 202 1 293 171 244 12 chr12 141747120 141747202 -2039253 - MLT1J LTR MaLR -369 142 42 2150 106 0 3 chr12 141747210 141747527 -2038928 + AluSg SINE Alu 4 319 0 221 96 77 0 chr12 141747801 141747853 -2038602 + (TA)n Simple_repeat Simple_repeat 1 56 0 2288 96 0 3 chr12 141747884 141748186 -2038269 - AluSq SINE Alu -12 301 1 463 286 104 50 chr12 141748273 141748657 -2037798 - L2 LINE L2 -756 2558 2154 279 232 38 92 chr12 141749015 141749036 -2037419 - L1ME4a LINE L1 -3 6118 6097 2147 100 4 4 chr12 141749036 141749340 -2037115 + AluSx SINE Alu 4 307 0 279 232 38 92 chr12 141749340 141749502 -2036953 - L1ME4a LINE L1 -24 6097 5944 459 227 117 0 chr12 141749656 141749810 -2036645 + HsTC2 DNA Tc2 1726 1897 -1 343 317 55 11 chr12 141750250 141750433 -2036022 - L1ME4a LINE L1 -369 5752 5562 281 206 68 0 chr12 141750819 141750892 -2035563 + MER53 DNA DNA 1 78 -111 189 0 0 0 chr12 141750981 141751002 -2035453 + (T)n Simple_repeat Simple_repeat 1 21 0 562 229 94 12 chr12 141751021 141751191 -2035264 + MER20 DNA MER1_type 35 218 -1 22 0 0 0 chr12 141751612 141751634 -2034821 + AT_rich Low_complexity Low_complexity 1 22 0 901 130 0 14 chr12 141752236 141752352 -2034103 + AluJo SINE Alu 1 116 -196 180 0 0 0 chr12 141752352 141752372 -2034083 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 901 130 0 14 chr12 141752372 141752393 -2034062 + AluJo SINE Alu 116 136 -176 495 171 21 26 chr12 141752602 141752711 -2033744 - L1PA13 LINE L1 0 6168 6062 2776 69 0 11 chr12 141752711 141753074 -2033381 + L1PA7 LINE L1 5792 6151 -3 2478 143 30 5 chr12 141754062 141754462 -2031993 + MSTA LTR MaLR 19 428 0 429 293 21 14 chr12 141755027 141755167 -2031288 + Charlie8 DNA MER1_type 1 141 -2276 2125 90 6 53 chr12 141755167 141755489 -2030966 + AluSq SINE Alu 1 307 -6 231 236 0 14 chr12 141755489 141755561 -2030894 - L1MC4 LINE L1 -1358 6684 6614 319 235 86 0 chr12 141755561 141755642 -2030813 + L1MC4 LINE L1 6616 6703 -1339 43099 34 26 2 chr12 141756883 141762887 -2023568 + L1PA3 LINE L1 1 6155 0 27 0 0 0 chr12 141762887 141762914 -2023541 + AT_rich Low_complexity Low_complexity 1 27 0 1554 165 11 28 chr12 141762924 141763209 -2023246 + AluJb SINE Alu 1 280 -32 240 111 0 0 chr12 141763209 141763245 -2023210 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 228 336 7 48 chr12 141763265 141763411 -2023044 + Charlie8 DNA MER1_type 96 235 -2182 220 191 0 0 chr12 141764907 141764949 -2021506 + GA-rich Low_complexity Low_complexity 4 45 0 2199 91 0 3 chr12 141765202 141765514 -2020941 + AluSx SINE Alu 1 311 0 307 224 90 52 chr12 141765542 141765676 -2020779 - L1ME4a LINE L1 -39 6082 5944 478 227 117 0 chr12 141765830 141765984 -2020471 + HsTC2 DNA Tc2 1726 1897 -1 356 317 55 11 chr12 141766424 141766607 -2019848 - L1ME4a LINE L1 -369 5752 5562 285 206 68 0 chr12 141766993 141767066 -2019389 + MER53 DNA DNA 1 78 -111 243 0 0 0 chr12 141767141 141767168 -2019287 + (TG)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 141767168 141767188 -2019267 + (T)n Simple_repeat Simple_repeat 1 20 0 568 218 94 12 chr12 141767206 141767376 -2019079 + MER20 DNA MER1_type 35 218 -1 2161 137 0 0 chr12 141767557 141767864 -2018591 - AluSx SINE Alu -5 307 1 271 270 45 67 chr12 141767864 141768031 -2018424 + L2 LINE L2 3111 3275 -38 366 82 82 16 chr12 141768485 141768607 -2017848 + (TA)n Simple_repeat Simple_repeat 2 131 0 563 296 127 56 chr12 141768628 141769550 -2016905 - L1M4 LINE L1 -2958 3424 2438 230 262 103 19 chr12 141769555 141769662 -2016793 - L1M4 LINE L1 -3942 2442 2327 331 317 82 82 chr12 141770012 141770400 -2016055 - HAL1b LINE L1 -624 724 337 399 239 138 6 chr12 141771545 141771712 -2014743 + MER53 DNA DNA 1 189 0 351 233 0 44 chr12 141772940 141773030 -2013425 - L2 LINE L2 0 3313 3228 255 289 0 0 chr12 141773449 141773525 -2012930 - MER116 DNA Mariner -4 76 1 648 322 80 16 chr12 141774574 141775012 -2011443 - MER113 DNA MER1_type? -52 469 4 234 128 0 0 chr12 141776924 141776963 -2009492 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 218 156 22 0 chr12 141776958 141777003 -2009452 + CT-rich Low_complexity Low_complexity 1 46 0 * 790 68 10 73 chr12 141777032 141777224 -2009231 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr12 141777831 141777854 -2008601 + (TG)n Simple_repeat Simple_repeat 2 24 0 210 231 0 0 chr12 141778735 141778774 -2007681 + (TG)n Simple_repeat Simple_repeat 2 40 0 3914 206 24 15 chr12 141780319 141780588 -2005867 - L1MC3 LINE L1 -14 7771 7506 3208 91 14 25 chr12 141780588 141780720 -2005735 - MER57B LTR ERV1 0 434 302 2123 103 0 0 chr12 141780720 141781030 -2005425 - AluY SINE Alu 0 310 1 3208 91 14 25 chr12 141781030 141781335 -2005120 - MER57B LTR ERV1 -132 302 1 3914 206 24 15 chr12 141781335 141781579 -2004876 - L1MC3 LINE L1 -279 7506 7266 3835 130 20 22 chr12 141781579 141782181 -2004274 - LTR43 LTR ERV1 -1 601 1 3914 206 24 15 chr12 141782181 141782537 -2003918 - L1MC3 LINE L1 -519 7266 6893 601 246 33 52 chr12 141782531 141782742 -2003713 - L1MCa LINE L1 -2019 4407 4201 * 3917 80 24 21 chr12 141782745 141783280 -2003175 - L1PA10 LINE L1 -2 6166 5630 604 176 9 0 chr12 141783280 141783388 -2003067 + L1P LINE L1 5220 5328 -818 1476 254 66 30 chr12 141783405 141783932 -2002523 - L1MCa LINE L1 -2242 4184 3639 959 166 61 31 chr12 141783991 141784220 -2002235 - L1MA7 LINE L1 0 6291 6056 3384 241 64 15 chr12 141784231 141785808 -2000647 - L1MCa LINE L1 -2811 3615 1883 520 286 31 6 chr12 141785796 141785957 -2000498 - L1MCa LINE L1 -6241 185 21 * 899 215 48 14 chr12 141786622 141786831 -1999624 - MER20 DNA MER1_type -3 216 1 293 319 44 15 chr12 141786967 141787102 -1999353 + L2 LINE L2 3175 3313 0 430 209 0 12 chr12 141787344 141787430 -1999025 - MER5B DNA MER1_type -93 85 1 2854 87 8 21 chr12 141789180 141789560 -1996895 - THE1C LTR MaLR 0 375 1 9719 123 14 65 chr12 141789560 141791223 -1995232 - THE1C-int LTR MaLR 0 1580 2 2794 115 3 8 chr12 141791226 141791600 -1994855 - THE1C LTR MaLR -2 373 2 24 0 0 0 chr12 141791621 141791645 -1994810 + AT_rich Low_complexity Low_complexity 1 24 0 712 230 26 31 chr12 141792293 141792484 -1993971 - MIR SINE MIR 0 262 73 2179 79 0 0 chr12 141792872 141793139 -1993316 - AluY SINE Alu -6 305 39 196 311 57 19 chr12 141793308 141793414 -1993041 + MIR SINE MIR 19 128 -80 1696 277 31 29 chr12 141793974 141794520 -1991935 + MLT1H1 LTR MaLR 1 547 -8 678 281 68 72 chr12 141794614 141795113 -1991342 + LTR33A LTR ERVL 12 508 -15 30 0 0 0 chr12 141795966 141795996 -1990459 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 141796440 141796468 -1989987 + AT_rich Low_complexity Low_complexity 1 28 0 365 282 31 41 chr12 141796483 141796678 -1989777 + L1ME1 LINE L1 4475 4667 -1479 28 29 0 0 chr12 141796722 141796757 -1989698 + AT_rich Low_complexity Low_complexity 1 35 0 1169 272 102 37 chr12 141797007 141797782 -1988673 + L1ME1 LINE L1 5039 5859 -311 24 0 0 0 chr12 141797784 141797808 -1988647 + AT_rich Low_complexity Low_complexity 1 24 0 367 160 0 160 chr12 141798212 141798274 -1988181 + HAL1b LINE L1 383 423 -925 2413 138 8 22 chr12 141798274 141798643 -1987812 - THE1B LTR MaLR 0 364 1 367 160 0 160 chr12 141798643 141798686 -1987769 + HAL1b LINE L1 423 471 -877 273 250 0 0 chr12 141798823 141798915 -1987540 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 581 96 34 45 chr12 141798935 141798977 -1987478 + (TAGA)n Simple_repeat Simple_repeat 4 45 -133 2190 184 101 0 chr12 141798977 141799364 -1987091 + MSTB LTR MaLR 1 426 0 581 96 34 45 chr12 141799364 141799498 -1986957 + (TAGA)n Simple_repeat Simple_repeat 45 178 0 303 308 87 0 chr12 141799638 141799742 -1986713 + L2 LINE L2 3158 3270 -2 869 216 66 38 chr12 141799910 141800123 -1986332 - MER20 DNA MER1_type 0 219 1 2918 65 5 11 chr12 141800199 141800566 -1985889 - L1PA8 LINE L1 -3 6169 5805 2098 129 0 7 chr12 141800915 141801224 -1985231 + AluSg SINE Alu 1 307 -3 877 243 27 23 chr12 141802447 141802706 -1983749 + L1ME1 LINE L1 5851 6110 -56 2162 103 14 0 chr12 141802706 141802988 -1983467 + AluSx SINE Alu 1 286 -26 477 276 131 31 chr12 141803248 141803624 -1982831 - MLT1J2 LTR MaLR -7 443 1 21 36 0 0 chr12 141804606 141804634 -1981821 + AT_rich Low_complexity Low_complexity 1 28 0 5486 89 13 0 chr12 141804983 141805665 -1980790 - LTR8 LTR ERV1 0 691 1 25723 82 13 51 chr12 141805665 141806002 -1980453 - HUERS-P1 LTR ERV1 0 6263 5915 288 77 0 0 chr12 141806002 141806041 -1980414 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2122 125 0 0 chr12 141806044 141806332 -1980123 - AluSx SINE Alu -24 288 1 25723 82 13 51 chr12 141806332 141809746 -1976709 - HUERS-P1 LTR ERV1 -350 5913 2650 220 125 75 0 chr12 141809953 141809993 -1976462 - L2 LINE L2 -10 3303 3261 294 277 150 3 chr12 141810719 141810890 -1975565 + MIR SINE MIR 12 262 0 2471 76 0 3 chr12 141811032 141811335 -1975120 + AluY SINE Alu 1 302 -9 2144 117 10 3 chr12 141812319 141812618 -1973837 + AluSp SINE Alu 1 301 -12 389 325 44 44 chr12 141812640 141812911 -1973544 + MLT1J LTR MaLR 231 501 -10 2385 93 0 0 chr12 141812943 141813244 -1973211 - AluSc SINE Alu -8 301 1 549 236 50 30 chr12 141816426 141816595 -1969860 - MLT1H1 LTR MaLR -2 553 403 1042 189 5 57 chr12 141816614 141816826 -1969629 + AluJb SINE Alu 76 276 -36 275 157 20 0 chr12 141816929 141816980 -1969475 - MLT1H1 LTR MaLR -304 286 235 643 268 57 43 chr12 141817040 141817249 -1969206 - MLT1H1 LTR MaLR -341 214 3 311 325 29 48 chr12 141817550 141817859 -1968596 + L2 LINE L2 2944 3309 -4 376 309 131 21 chr12 141818815 141819051 -1967404 + MIR SINE MIR 1 262 0 304 318 12 0 chr12 141819054 141819139 -1967316 + Charlie8 DNA MER1_type 161 246 -2171 417 191 16 24 chr12 141819427 141819553 -1966902 + CT-rich Low_complexity Low_complexity 3 127 0 2195 133 0 0 chr12 141820204 141820504 -1965951 + AluSx SINE Alu 1 300 -12 2177 119 0 0 chr12 141820504 141820807 -1965648 + AluY SINE Alu 1 303 -8 454 242 76 81 chr12 141821197 141821420 -1965035 + MER106B DNA MER1_type 2 1046 -13 327 25 0 0 chr12 141821431 141821471 -1964984 + (CA)n Simple_repeat Simple_repeat 2 41 0 252 59 0 0 chr12 141821471 141821505 -1964950 + (GA)n Simple_repeat Simple_repeat 1 34 0 369 154 2 0 chr12 141821508 141821576 -1964879 + L1MC3 LINE L1 6870 6930 -855 * 2444 209 8 4 chr12 141821575 141822067 -1964388 + L1MC3 LINE L1 7291 7784 -1 222 217 17 130 chr12 141822842 141822922 -1963533 + L2 LINE L2 3171 3236 -36 1919 223 61 40 chr12 141822922 141823416 -1963039 - MLT1D LTR MaLR 0 505 2 222 217 17 130 chr12 141823416 141823450 -1963005 + L2 LINE L2 3236 3272 0 201 94 0 0 chr12 141824587 141824619 -1961836 + (CA)n Simple_repeat Simple_repeat 1 32 0 1043 296 61 48 chr12 141824944 141825566 -1960889 + L1ME3A LINE L1 5319 5948 -222 858 184 0 0 chr12 141825799 141825978 -1960477 + (CA)n Simple_repeat Simple_repeat 2 180 0 236 266 49 0 chr12 141825978 141826121 -1960334 + (TA)n Simple_repeat Simple_repeat 1 150 0 423 288 50 14 chr12 141826573 141826712 -1959743 + MIR SINE MIR 48 191 -71 25 0 0 0 chr12 141826872 141826897 -1959558 + AT_rich Low_complexity Low_complexity 1 25 0 2954 224 14 62 chr12 141827198 141827924 -1958531 - LTR8 LTR ERV1 0 691 1 613 291 133 41 chr12 141827940 141828496 -1957959 + L1MB5 LINE L1 5258 5864 -310 243 88 0 0 chr12 141828608 141828642 -1957813 + (TA)n Simple_repeat Simple_repeat 1 34 0 2165 120 3 3 chr12 141828651 141828950 -1957505 + AluSq SINE Alu 1 299 -14 277 316 11 0 chr12 141828957 141829052 -1957403 + (TA)n Simple_repeat Simple_repeat 1 96 0 305 194 0 28 chr12 141829181 141829253 -1957202 + L1MC5 LINE L1 7848 7917 -44 226 268 98 27 chr12 141829387 141829499 -1956956 + MIR SINE MIR 73 192 -70 2439 170 16 30 chr12 141829600 141830094 -1956361 - MER41B LTR ERV1 -35 600 114 2268 195 90 35 chr12 141830204 141830740 -1955715 - LTR49 LTR ERV1 0 595 25 2328 83 0 25 chr12 141830740 141831054 -1955401 - AluY SINE Alu -5 306 1 2268 195 90 35 chr12 141831054 141831081 -1955374 - LTR49 LTR ERV1 -570 25 1 1695 116 160 100 chr12 141831432 141831627 -1954828 - MER4A LTR ERV1 0 664 482 1989 101 0 36 chr12 141831627 141831903 -1954552 + AluSc SINE Alu 30 295 -14 1695 116 160 100 chr12 141831903 141832088 -1954367 - MER4A LTR ERV1 -182 482 261 574 124 21 10 chr12 141832088 141832185 -1954270 - MER4A LTR ERV1 -566 98 1 970 244 14 5 chr12 141832208 141832429 -1954026 - MER58A DNA MER1_type -1 223 1 295 307 29 54 chr12 141832429 141832528 -1953927 - MER113 DNA MER1_type? -29 492 399 2267 113 0 3 chr12 141832528 141832830 -1953625 + AluSg SINE Alu 1 301 -9 295 307 29 54 chr12 141832830 141832935 -1953520 - MER113 DNA MER1_type? -122 399 293 422 278 69 21 chr12 141834295 141834439 -1952016 - L2 LINE L2 -4 3309 3159 3881 107 13 8 chr12 141834537 141835063 -1951392 - MER1A DNA MER1_type 0 529 1 482 217 86 33 chr12 141835427 141835579 -1950876 + MER58B DNA MER1_type 182 341 0 240 35 0 0 chr12 141835671 141835700 -1950755 + (TG)n Simple_repeat Simple_repeat 1 29 0 356 301 25 37 chr12 141835989 141836152 -1950303 - L2 LINE L2 -503 2811 2651 2297 105 0 0 chr12 141836343 141836647 -1949808 - AluSx SINE Alu -8 304 1 348 115 23 11 chr12 141837113 141837200 -1949255 + (TA)n Simple_repeat Simple_repeat 2 89 0 315 171 49 37 chr12 141837203 141837285 -1949170 + L1MCa LINE L1 1998 2080 -4346 2386 121 11 24 chr12 141837745 141838124 -1948331 + MSTA LTR MaLR 16 389 -39 1329 206 37 20 chr12 141838128 141838424 -1948031 - MSTA LTR MaLR -125 303 3 258 81 0 0 chr12 141838990 141839027 -1947428 + (TC)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chr12 141839027 141839061 -1947394 + (CA)n Simple_repeat Simple_repeat 1 34 0 5057 164 33 27 chr12 141839154 141840051 -1946404 + MER4D LTR ERV1 1 903 0 1830 156 10 13 chr12 141841270 141841572 -1944883 - AluJo SINE Alu -11 301 1 433 292 5 89 chr12 141844530 141844732 -1941723 + MIR SINE MIR 9 193 -69 337 116 0 8 chr12 141844734 141844784 -1941671 - L1PA8A LINE L1 -357 5774 5725 1928 115 7 4 chr12 141844784 141845061 -1941394 + L1PA13 LINE L1 5882 6160 -3 337 116 0 8 chr12 141845061 141845079 -1941376 - L1PA8A LINE L1 -406 5725 5708 239 350 58 10 chr12 141846219 141846322 -1940133 - L2 LINE L2 -161 3111 3004 233 301 36 12 chr12 141846321 141846404 -1940051 - L2 LINE L2 -4 3309 3225 * 404 225 12 12 chr12 141846712 141846885 -1939570 + GA-rich Low_complexity Low_complexity 1 173 0 450 313 8 0 chr12 141847123 141847251 -1939204 + L2 LINE L2 3139 3267 -5 1665 188 3 3 chr12 141847769 141848056 -1938399 - AluJb SINE Alu -25 287 1 31 44 0 0 chr12 141848056 141848101 -1938354 + AT_rich Low_complexity Low_complexity 1 45 0 1719 163 68 36 chr12 141848242 141848579 -1937876 - MER7A DNA MER2_type 0 346 1 2073 99 14 3 chr12 141849006 141849298 -1937157 + AluSx SINE Alu 1 295 -17 501 252 40 7 chr12 141849509 141849660 -1936795 - MER103 DNA DNA -10 156 1 250 282 42 48 chr12 141850513 141850811 -1935644 + L1ME LINE L1 5255 5545 -621 322 211 133 0 chr12 141850850 141850940 -1935515 + LTR33 LTR ERVL 19 120 -401 238 261 29 0 chr12 141850938 141851007 -1935448 + LTR33 LTR ERVL 50 120 -401 * 601 312 63 8 chr12 141851005 141851429 -1935026 + LTR33 LTR ERVL 50 513 -8 1217 112 0 0 chr12 141851815 141851985 -1934470 + L1PB3 LINE L1 5622 5791 -363 380 119 30 0 chr12 141851985 141852052 -1934403 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 234 152 0 0 chr12 141852054 141852100 -1934355 - LTR66 LTR ERVL -171 439 394 2468 97 49 9 chr12 141852104 141852453 -1934002 + L1PB3 LINE L1 5789 6151 -3 388 310 77 80 chr12 141852687 141853039 -1933416 - MLT1K LTR MaLR -162 426 76 185 94 31 0 chr12 141853811 141853843 -1932612 + GA-rich Low_complexity Low_complexity 4 36 0 558 203 83 15 chr12 141853885 141854018 -1932437 + MIR SINE MIR 24 165 -97 340 314 76 73 chr12 141854494 141854745 -1931710 - L2 LINE L2 -340 2974 2725 2903 107 3 3 chr12 141854745 141855137 -1931318 - L1PA10 LINE L1 0 6168 5777 1748 167 0 0 chr12 141855137 141855418 -1931037 - AluSx SINE Alu -23 289 9 340 314 76 73 chr12 141855418 141855573 -1930882 - L2 LINE L2 -588 2726 2566 3661 121 61 5 chr12 141856461 141857039 -1929416 + MER4B LTR ERV1 1 610 0 287 250 68 0 chr12 141857185 141857273 -1929182 + MER58B DNA MER1_type 248 341 0 218 295 8 93 chr12 141857701 141857830 -1928625 - MIR SINE MIR -116 146 29 900 217 43 23 chr12 141857841 141858090 -1928365 + MLT1A1 LTR MaLR 1 265 -100 485 200 50 0 chr12 141858219 141858319 -1928136 + MLT1A1 LTR MaLR 261 365 0 2992 74 0 11 chr12 141858910 141859289 -1927166 - THE1C LTR MaLR 0 375 1 1507 159 30 75 chr12 141859891 141860259 -1926196 - AluJo SINE Alu 0 355 1 31 26 0 0 chr12 141860271 141860309 -1926146 + AT_rich Low_complexity Low_complexity 1 38 0 410 289 97 40 chr12 141860871 141861099 -1925356 + MER102b DNA MER1_type 96 336 -5 308 225 49 63 chr12 141861379 141861521 -1924934 + MLT1L LTR MaLR 474 613 -2 185 125 25 25 chr12 141861524 141861564 -1924891 + MIR SINE MIR 16 55 -207 294 276 31 31 chr12 141862136 141862234 -1924221 + MLT1J2 LTR MaLR 69 166 -284 648 120 0 0 chr12 141862837 141862937 -1923518 - AluSc SINE Alu -5 304 205 26 0 0 0 chr12 141863090 141863116 -1923339 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 141863272 141863294 -1923161 + AT_rich Low_complexity Low_complexity 1 22 0 341 223 176 88 chr12 141864067 141864215 -1922240 + MLT1J2 LTR MaLR 241 401 -45 390 300 56 25 chr12 141864435 141864595 -1921860 + MIR SINE MIR 76 240 -22 2117 121 0 23 chr12 141865441 141865747 -1920708 - AluSq SINE Alu -14 299 1 635 207 20 76 chr12 141866417 141866490 -1919965 + MER5A DNA MER1_type 2 78 -111 2210 112 0 13 chr12 141866490 141866794 -1919661 + AluSx SINE Alu 1 300 -12 635 207 20 76 chr12 141866794 141866918 -1919537 + MER5A DNA MER1_type 78 188 -1 1961 260 42 20 chr12 141868088 141868631 -1917824 + MER77 LTR ERV1 45 599 -6 237 65 0 0 chr12 141868653 141868684 -1917771 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 444 182 0 0 chr12 141870059 141870147 -1916308 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 1317 117 5 2 chr12 141871181 141871390 -1915065 + L1MC1 LINE L1 5597 5802 -441 6555 60 4 1 chr12 141871395 141872214 -1914241 - L1PA8 LINE L1 -7 6165 5345 2853 158 22 33 chr12 141872214 141872621 -1913834 + L1MC1 LINE L1 5788 6189 -144 2297 95 67 25 chr12 141872621 141872980 -1913475 + THE1C LTR MaLR 2 375 0 2853 158 22 33 chr12 141872980 141873123 -1913332 + L1MC1 LINE L1 6189 6332 -1 14770 141 25 8 chr12 141873727 141876103 -1910352 + Tigger1 DNA MER2_type 4 2418 0 1264 314 80 9 chr12 141876430 141876965 -1909490 - MLT1K LTR MaLR 0 588 16 183 42 0 0 chr12 141877668 141877692 -1908763 + (TTG)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr12 141878340 141878370 -1908085 + AT_rich Low_complexity Low_complexity 1 30 0 550 179 116 0 chr12 141878514 141878609 -1907846 - MER2 DNA MER2_type 0 345 240 1224 133 12 79 chr12 141879050 141879291 -1907164 - MER2 DNA MER2_type -120 225 1 214 279 0 16 chr12 141879322 141879383 -1907072 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 351 355 68 35 chr12 141879403 141879769 -1906686 + L2 LINE L2 2597 2974 -340 438 303 179 21 chr12 141879915 141880301 -1906154 - MLT1H LTR MaLR -102 447 1 246 373 25 0 chr12 141880626 141880787 -1905668 + MIR3 SINE MIR 38 202 -6 189 121 0 0 chr12 141882757 141882790 -1903665 + (TCC)n Simple_repeat Simple_repeat 2 34 0 581 305 34 24 chr12 141882970 141883265 -1903190 - L1MC4a LINE L1 -1880 5928 5631 238 289 56 0 chr12 141885019 141885109 -1901346 + MLT1J LTR MaLR 380 474 -37 209 364 0 0 chr12 141885520 141885608 -1900847 + L3 LINE CR1 1056 1143 -434 2206 133 36 28 chr12 141886292 141886653 -1899802 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr12 141886888 141886921 -1899534 + AT_rich Low_complexity Low_complexity 1 33 0 1406 99 9 77 chr12 141886938 141887171 -1899284 + AluY SINE Alu 93 309 -2 1260 317 71 4 chr12 141887446 141887913 -1898542 + MLT1D LTR MaLR 8 505 0 3296 87 13 4 chr12 141888183 141888643 -1897812 - L1PA13 LINE L1 -1 6162 5699 266 262 0 0 chr12 141888927 141888988 -1897467 - MLT1I LTR MaLR 0 409 349 1169 225 77 9 chr12 141888996 141889334 -1897121 + MLT1A1 LTR MaLR 5 365 0 368 249 73 30 chr12 141889485 141889650 -1896805 - MLT1J2 LTR MaLR -278 172 1 253 284 22 75 chr12 141889654 141889788 -1896667 - L1 LINE L1 -1304 4842 4716 21 0 0 0 chr12 141889848 141889869 -1896586 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr12 141889884 141889922 -1896533 + (CA)n Simple_repeat Simple_repeat 1 38 0 322 284 90 19 chr12 141890626 141890837 -1895618 - MIR SINE MIR -16 246 21 256 164 18 18 chr12 141891207 141891262 -1895193 - MLT1H LTR MaLR -397 152 98 191 299 184 0 chr12 141892108 141892195 -1894260 + L2 LINE L2 3127 3229 -43 731 242 35 54 chr12 141892241 141892501 -1893954 - L1ME1 LINE L1 -17 6149 5895 216 222 19 19 chr12 141892507 141892561 -1893894 - MIR SINE MIR -10 252 199 731 196 11 84 chr12 141892631 141892810 -1893645 + AluSc SINE Alu 135 300 -9 2321 105 0 19 chr12 141892813 141893127 -1893328 + AluSx SINE Alu 1 308 -4 365 136 74 25 chr12 141893822 141893893 -1892562 - MSTB1 LTR MaLR 0 432 358 1787 176 58 35 chr12 141893893 141894425 -1892030 + MLT2A2 LTR ERVL 1 544 -10 1469 189 110 6 chr12 141894430 141894758 -1891697 - MSTB1 LTR MaLR -70 362 1 1146 117 19 6 chr12 141894979 141895195 -1891260 - AluSc SINE Alu 0 335 118 1844 231 67 67 chr12 141895872 141896426 -1890029 + MLT2B3 LTR ERVL 1 554 0 204 256 151 12 chr12 141896638 141896724 -1889731 - L2 LINE L2 0 3313 3216 2088 176 55 40 chr12 141896724 141897196 -1889259 + MLT2B1 LTR ERVL 1 479 -41 243 188 0 0 chr12 141897281 141897329 -1889126 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 2328 209 21 64 chr12 141897331 141897906 -1888549 - MLT2B3 LTR ERVL 0 554 5 1616 178 35 6 chr12 141897935 141898277 -1888178 + Tigger2 DNA MER2_type 2 353 -2365 216 130 0 0 chr12 141898287 141898333 -1888122 + (TA)n Simple_repeat Simple_repeat 1 46 0 322 127 36 0 chr12 141898339 141898394 -1888061 - MLT2B1 LTR ERVL 0 520 464 2387 182 8 0 chr12 141898395 141898785 -1887670 + Tigger2 DNA MER2_type 352 744 -1974 1426 150 28 20 chr12 141898853 141899107 -1887348 + Tigger2 DNA MER2_type 2463 2718 0 357 271 0 0 chr12 141899167 141899311 -1887144 + (TA)n Simple_repeat Simple_repeat 1 144 0 323 83 21 0 chr12 141899315 141899363 -1887092 + MLT2B1 LTR ERVL 464 512 -8 2704 35 0 6 chr12 141899662 141899975 -1886480 + AluYa5 SINE Alu 1 311 0 299 324 59 0 chr12 141900054 141900190 -1886265 + Charlie8 DNA MER1_type 124 267 -2150 1083 137 29 0 chr12 141900422 141900597 -1885858 - Tigger2 DNA MER2_type -65 2653 2474 1039 283 66 27 chr12 141901657 141902098 -1884357 - L1ME2 LINE L1 -22 6142 5685 182 317 0 0 chr12 141902215 141902275 -1884180 + MIR SINE MIR 55 114 -148 2249 91 3 3 chr12 141902987 141903304 -1883151 + AluSp SINE Alu 1 317 0 2084 129 0 28 chr12 141904135 141904452 -1882003 - AluSg SINE Alu -2 308 1 670 256 68 0 chr12 141905160 141905351 -1881104 + LTR16C LTR ERVL 257 460 -31 389 269 37 12 chr12 141905380 141905599 -1880856 + MLT1L LTR MaLR 330 610 -5 701 219 118 6 chr12 141906666 141906835 -1879620 + MER5A DNA MER1_type 2 189 0 235 236 64 36 chr12 141907440 141907550 -1878905 - MLT1K LTR MaLR -20 568 456 4827 210 51 23 chr12 141907835 141908570 -1877885 - Charlie1a DNA MER1_type -1308 1453 669 4675 147 80 7 chr12 141908570 141909412 -1877043 - MER4D LTR ERV1 0 903 1 4827 210 51 23 chr12 141909412 141909882 -1876573 - Charlie1a DNA MER1_type -2092 669 214 1339 150 21 9 chr12 141910104 141910337 -1876118 + MER4D LTR ERV1 1 236 -667 1879 220 8 35 chr12 141910342 141910842 -1875613 - LTR60 LTR ERV1 -36 550 1 790 279 13 18 chr12 141910842 141911067 -1875388 - Charlie1a DNA MER1_type -1231 224 1 310 324 21 41 chr12 141911088 141911233 -1875222 - MLT1K LTR MaLR -444 144 3 293 240 48 39 chr12 141911487 141911591 -1874864 + MIR SINE MIR 38 142 -66 246 302 39 50 chr12 141912853 141913032 -1873423 - L2 LINE L2 -216 3056 2880 186 292 83 0 chr12 141913092 141913164 -1873291 - MIR SINE MIR -119 143 66 181 324 14 14 chr12 141914558 141914629 -1871826 + L2 LINE L2 3007 3077 -195 269 272 117 19 chr12 141914977 141915080 -1871375 + MLT1I LTR MaLR 294 406 -3 2261 107 10 10 chr12 141915167 141915476 -1870979 + AluSx SINE Alu 1 309 -3 534 279 130 27 chr12 141916342 141916604 -1869851 + Charlie2 DNA MER1_type 1 289 -2573 837 256 149 0 chr12 141916669 141916958 -1869497 + Charlie2 DNA MER1_type 1856 2187 -675 282 250 53 13 chr12 141917088 141917164 -1869291 + MLT2E LTR ERVL 47 125 -503 559 258 156 30 chr12 141917393 141917688 -1868767 + MLT1I LTR MaLR 72 403 -6 433 243 36 9 chr12 141917858 141917969 -1868486 - L1MA9 LINE L1 -22 6290 6177 470 189 21 60 chr12 141917982 141918001 -1868454 - L1MA9 LINE L1 -101 6082 6064 1803 185 0 3 chr12 141918001 141918304 -1868151 - AluJb SINE Alu -10 302 1 470 189 21 60 chr12 141918304 141918422 -1868033 - L1MA9 LINE L1 -119 6064 5947 1840 186 53 16 chr12 141918423 141918858 -1867597 + Charlie2 DNA MER1_type 2380 2830 -32 780 212 47 21 chr12 141918863 141919056 -1867399 + MER3 DNA MER1_type 6 203 -6 415 143 0 26 chr12 141919882 141919959 -1866496 - MADE1 DNA Mariner 0 80 6 701 214 102 41 chr12 141922040 141922236 -1864219 - MER63A DNA MER1_type -2 208 1 357 154 59 18 chr12 141922855 141923024 -1863431 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 395 138 72 12 chr12 141923076 141923243 -1863212 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 446 149 68 0 chr12 141923285 141923446 -1863009 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 260 314 41 33 chr12 141924120 141924241 -1862214 - Charlie8 DNA MER1_type -2211 206 85 856 241 128 45 chr12 141924421 141924850 -1861605 - MLT1G LTR MaLR 0 590 117 265 132 19 75 chr12 141924897 141924950 -1861505 - MLT1G LTR MaLR -545 50 1 529 332 82 30 chr12 141925761 141926059 -1860396 - MLT1I LTR MaLR -18 391 73 2483 121 5 24 chr12 141926059 141926430 -1860025 - THE1B LTR MaLR 0 364 1 529 332 82 30 chr12 141926430 141926462 -1859993 - MLT1I LTR MaLR -336 73 44 * 1437 138 17 34 chr12 141926454 141926693 -1859762 - THE1B LTR MaLR -129 235 1 337 206 165 21 chr12 141926998 141927095 -1859360 + MLT1I LTR MaLR 59 169 -240 348 210 227 8 chr12 141927798 141927917 -1858538 + MIR SINE MIR 1 145 -117 415 183 256 10 chr12 141928185 141928327 -1858128 + MLT1C LTR MaLR 1 168 -222 957 168 0 0 chr12 141928336 141928491 -1857964 + FRAM SINE Alu 1 155 -21 923 199 70 37 chr12 141928514 141928786 -1857669 + MLT1C LTR MaLR 187 467 0 2004 93 0 4 chr12 141928914 141929172 -1857283 - AluSg SINE Alu -6 304 48 1333 140 22 9 chr12 141930057 141930286 -1856169 + L1MB1 LINE L1 5936 6167 -1 181 151 38 0 chr12 141930295 141930348 -1856107 + A-rich Low_complexity Low_complexity 1 55 0 254 257 291 14 chr12 141930408 141930556 -1855899 - MLT1K LTR MaLR -85 503 315 225 132 0 0 chr12 141930999 141931037 -1855418 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 626 301 151 40 chr12 141931448 141931973 -1854482 + L1MC4a LINE L1 5293 5875 -1933 1595 198 93 3 chr12 141931986 141932319 -1854136 + MER47A DNA MER2_type 3 365 -1 818 252 0 11 chr12 141932336 141932621 -1853834 + (TCCA)n Simple_repeat Simple_repeat 1 281 0 28 0 0 0 chr12 141932899 141932927 -1853528 + AT_rich Low_complexity Low_complexity 1 28 0 183 250 125 0 chr12 141933286 141933334 -1853121 + L3 LINE CR1 1448 1501 -76 1765 239 29 25 chr12 141933463 141933945 -1852510 + L1ME LINE L1 6 489 -5581 343 269 19 0 chr12 141934175 141934283 -1852172 + L2 LINE L2 2564 2673 -641 334 321 130 57 chr12 141934294 141934474 -1851981 + L2 LINE L2 2804 2970 -343 1998 133 3 40 chr12 141934474 141934796 -1851659 - AluSx SINE Alu 0 312 3 1852 168 19 10 chr12 141934798 141935107 -1851348 - AluJo SINE Alu 0 312 1 334 321 130 57 chr12 141935107 141935378 -1851077 + L2 LINE L2 2970 3291 -22 800 174 14 14 chr12 141935383 141935527 -1850928 - FRAM SINE Alu -9 167 24 537 313 15 10 chr12 141935965 141936160 -1850295 - MIR3 SINE MIR -9 199 4 1748 112 4 4 chr12 141936799 141937041 -1849414 - AluY SINE Alu -69 242 1 261 0 0 0 chr12 141937043 141937072 -1849383 + (T)n Simple_repeat Simple_repeat 1 29 0 212 288 38 12 chr12 141937432 141937512 -1848943 - MIR SINE MIR -60 202 121 814 251 87 83 chr12 141938059 141938095 -1848360 + MLT1J LTR MaLR 7 41 -470 2279 109 0 7 chr12 141938095 141938399 -1848056 - AluSg SINE Alu -8 302 1 814 251 87 83 chr12 141938399 141938820 -1847635 + MLT1J LTR MaLR 41 466 -45 1863 170 0 0 chr12 141938843 141939153 -1847302 + AluSx SINE Alu 1 310 0 237 285 139 23 chr12 141939283 141939455 -1847000 + MER113 DNA MER1_type? 329 520 -1 189 0 0 0 chr12 141940248 141940269 -1846186 + (A)n Simple_repeat Simple_repeat 1 21 0 255 237 0 0 chr12 141940567 141940626 -1845829 - L2 LINE L2 -8 3305 3247 333 235 27 54 chr12 141940760 141940909 -1845546 + (TATATG)n Simple_repeat Simple_repeat 3 147 0 396 216 0 0 chr12 141941502 141941599 -1844856 + (TCCA)n Simple_repeat Simple_repeat 2 98 0 292 172 58 0 chr12 141943542 141943621 -1842834 - AluS SINE Alu -230 73 35 1246 187 0 0 chr12 141943688 141943897 -1842558 + AluSg/x SINE Alu 99 307 -5 1995 197 97 25 chr12 141944355 141944879 -1841576 + MER68 LTR ERV1 1 562 0 246 175 38 0 chr12 141946232 141946312 -1840143 + (TA)n Simple_repeat Simple_repeat 2 84 0 625 263 61 65 chr12 141946825 141947242 -1839213 - MLT1J1 LTR MaLR -52 394 8 348 24 0 0 chr12 141947587 141947628 -1838827 + (TG)n Simple_repeat Simple_repeat 2 42 0 208 246 0 35 chr12 141947632 141947689 -1838766 + GA-rich Low_complexity Low_complexity 2 56 0 275 196 42 119 chr12 141948639 141948691 -1837764 - Charlie7 DNA MER1_type -5 2607 2553 2146 110 7 13 chr12 141948691 141948991 -1837464 + AluSp SINE Alu 1 298 -15 275 196 42 119 chr12 141948991 141949106 -1837349 - Charlie7 DNA MER1_type -59 2553 2453 189 0 0 0 chr12 141950012 141950033 -1836422 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 486 242 55 0 chr12 141950144 141950272 -1836183 - MER91C DNA MER1_type -1 139 5 2224 169 27 8 chr12 141950280 141950682 -1835773 - MER44D DNA MER2_type 0 705 296 238 180 82 0 chr12 141950741 141950802 -1835653 - MER44D DNA MER2_type -344 361 296 * 1206 204 30 15 chr12 141950781 141951051 -1835404 - MER44D DNA MER2_type -344 361 88 1060 171 0 0 chr12 141951051 141951215 -1835240 - AluSg/x SINE Alu -15 297 134 2024 118 19 45 chr12 141951215 141951528 -1834927 - AluY SINE Alu -6 305 1 255 169 400 0 chr12 141951528 141951593 -1834862 - MER44D DNA MER2_type -614 91 1 21 0 0 0 chr12 141951879 141951900 -1834555 + AT_rich Low_complexity Low_complexity 1 21 0 2053 124 0 20 chr12 141952303 141952601 -1833854 - AluSx SINE Alu -15 297 6 678 159 24 32 chr12 141952626 141952752 -1833703 - FLAM_C SINE Alu -18 125 1 285 311 131 6 chr12 141952752 141952935 -1833520 - L2 LINE L2 -6 3307 3102 248 120 20 0 chr12 141953767 141953817 -1832638 + A-rich Low_complexity Low_complexity 2 52 0 257 300 25 0 chr12 141954478 141954558 -1831897 + (CATA)n Simple_repeat Simple_repeat 3 84 0 2040 161 33 0 chr12 141954558 141954893 -1831562 + MER7A DNA MER2_type 1 344 -2 852 181 0 0 chr12 141954918 141955089 -1831366 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 644 92 0 0 chr12 141955236 141955323 -1831132 - AluSc SINE Alu -19 290 204 514 266 58 55 chr12 141955332 141955644 -1830811 + L1ME3 LINE L1 5522 5834 -328 1879 36 0 0 chr12 141955856 141956078 -1830377 - L1PA4 LINE L1 0 6155 5934 249 139 0 0 chr12 141956961 141957004 -1829451 + (TG)n Simple_repeat Simple_repeat 1 43 0 209 217 31 0 chr12 141957087 141957216 -1829239 + (TA)n Simple_repeat Simple_repeat 2 134 0 219 267 23 0 chr12 141957236 141957322 -1829133 + (TA)n Simple_repeat Simple_repeat 1 88 0 358 306 72 31 chr12 141958056 141958278 -1828177 - L1ME1 LINE L1 -9 6157 5927 * 627 266 50 9 chr12 141958264 141958486 -1827969 + L1ME1 LINE L1 5704 5934 -232 415 319 55 8 chr12 141959613 141959870 -1826585 + MER113 DNA MER1_type? 161 429 -92 2307 94 0 0 chr12 141960191 141960489 -1825966 + AluSx SINE Alu 1 298 -14 1507 250 56 12 chr12 141960492 141960972 -1825483 - Charlie4a DNA MER1_type -6 502 2 497 273 110 10 chr12 141961181 141961481 -1824974 + L1ME4a LINE L1 5599 5928 -193 246 281 18 0 chr12 141961627 141961684 -1824771 + (CA)n Simple_repeat Simple_repeat 1 58 0 263 284 73 0 chr12 141961764 141961873 -1824582 - L2 LINE L2 -4 3309 3193 197 275 36 96 chr12 141962811 141962978 -1823477 - MIR SINE MIR -11 251 95 200 167 0 0 chr12 141963007 141963037 -1823418 + C-rich Low_complexity Low_complexity 1 30 0 1522 214 162 12 chr12 141963037 141963457 -1822998 + MLT1D LTR MaLR 23 505 0 2312 112 62 39 chr12 141963487 141963843 -1822612 + THE1B LTR MaLR 1 364 0 229 386 92 5 chr12 141963959 141964143 -1822312 + MIR SINE MIR 13 212 -50 1852 210 86 25 chr12 141964174 141964689 -1821766 - MER39 LTR ERV1 0 707 4 203 156 44 0 chr12 141964789 141964834 -1821621 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 251 330 9 70 chr12 141965484 141965599 -1820856 - L2 LINE L2 -9 3263 3156 375 140 7 0 chr12 141965985 141966040 -1820415 + MSTB2 LTR MaLR 2 58 -364 2379 51 0 7 chr12 141966040 141966382 -1820073 + AluY SINE Alu 1 311 0 2438 42 0 3 chr12 141966394 141966698 -1819757 + AluY SINE Alu 1 303 0 2320 160 43 5 chr12 141966753 141967147 -1819308 + MSTB2 LTR MaLR 49 457 0 1713 251 92 15 chr12 141967168 141967646 -1818809 + MLT1F1 LTR MaLR 1 515 -52 365 321 59 44 chr12 141967659 141967930 -1818525 - MLT1K LTR MaLR -120 468 194 352 225 23 85 chr12 141968051 141968180 -1818275 - L2 LINE L2 -5 3308 3188 302 265 53 66 chr12 141968222 141968373 -1818082 + MIR SINE MIR 58 206 -56 1328 233 81 20 chr12 141968426 141969120 -1817335 + L1ME1 LINE L1 5210 6128 -38 1655 176 0 0 chr12 141969124 141969403 -1817052 + L1MA2 LINE L1 4647 4925 -1221 6937 137 24 6 chr12 141969430 141970842 -1815613 + L1MA2 LINE L1 4875 6304 0 34 0 0 0 chr12 141970879 141970913 -1815542 + AT_rich Low_complexity Low_complexity 1 34 0 414 229 46 9 chr12 141971212 141971321 -1815134 + Charlie8 DNA MER1_type 97 209 -2208 192 152 0 0 chr12 141971676 141971709 -1814746 + GA-rich Low_complexity Low_complexity 2 34 0 6676 93 9 6 chr12 141972311 141973926 -1812529 - L1PB1 LINE L1 -1 6150 4534 7179 206 27 13 chr12 141973926 141974635 -1811820 + L1 LINE L1 1923 2620 -3526 2460 70 0 3 chr12 141974635 141974933 -1811522 + AluY SINE Alu 1 297 -14 7179 206 27 13 chr12 141974933 141975915 -1810540 + L1 LINE L1 2620 3632 -2514 831 203 0 0 chr12 141975999 141976267 -1810188 + (ATG)n Simple_repeat Simple_repeat 1 268 0 7636 22 4 1 chr12 141976446 141977449 -1809006 - L1PA4 LINE L1 -33 6122 5118 3266 167 56 14 chr12 141977838 141978412 -1808043 + MER7C DNA MER2_type 2 599 -3 237 33 0 0 chr12 141978412 141978442 -1808013 + (TC)n Simple_repeat Simple_repeat 2 31 0 2383 89 0 3 chr12 141978467 141978769 -1807686 - AluY SINE Alu -10 301 1 612 172 0 10 chr12 141979092 141979191 -1807264 + MER20B DNA MER1_type 43 140 -79 289 226 128 10 chr12 141979192 141979294 -1807161 - MER95 LTR ERV 0 431 318 25 0 0 0 chr12 141979669 141979694 -1806761 + AT_rich Low_complexity Low_complexity 1 25 0 201 240 0 0 chr12 141980590 141980640 -1805815 + (TCTCTG)n Simple_repeat Simple_repeat 6 55 0 339 298 53 0 chr12 141980873 141980987 -1805468 + MIR SINE MIR 54 173 -89 1929 166 3 3 chr12 141982244 141982551 -1803904 - AluSx SINE Alu -4 308 2 1070 204 27 124 chr12 141982702 141982979 -1803476 - MLT1A1 LTR MaLR -1 364 137 2287 62 0 17 chr12 141982979 141983269 -1803186 - AluY SINE Alu -4 307 23 1070 204 27 124 chr12 141983269 141983394 -1803061 - MLT1A1 LTR MaLR -228 137 1 321 330 116 10 chr12 141983490 141983784 -1802671 + L2 LINE L2 2626 2950 -364 394 239 110 126 chr12 141983814 141984115 -1802340 + L2 LINE L2 2992 3287 -26 201 175 0 0 chr12 141984143 141984183 -1802272 + GA-rich Low_complexity Low_complexity 1 40 0 335 326 53 0 chr12 141984490 141984677 -1801778 - LTR16C LTR ERVL -294 197 1 * 1162 269 80 27 chr12 141984677 141985111 -1801344 - MER115 DNA AcHobo -57 636 180 926 309 49 14 chr12 141985114 141985560 -1800895 + LTR16C LTR ERVL 3 464 -27 251 273 15 0 chr12 141985567 141985633 -1800822 - MER115 DNA AcHobo -510 183 117 2007 133 7 0 chr12 141986342 141986628 -1799827 + AluSx SINE Alu 9 296 -16 548 268 83 6 chr12 141987186 141987343 -1799112 + MER5B DNA MER1_type 8 176 -2 324 0 0 0 chr12 141987610 141987646 -1798809 + (CA)n Simple_repeat Simple_repeat 1 36 0 422 276 40 54 chr12 141988045 141988379 -1798076 - L1ME4a LINE L1 -95 6026 5696 273 202 289 46 chr12 141988379 141988597 -1797858 - MLT1G3 LTR MaLR -86 444 174 428 310 60 12 chr12 141988772 141989100 -1797355 - L1ME4a LINE L1 -492 5629 5299 1506 165 88 7 chr12 141989113 141989386 -1797069 - AluJb SINE Alu -16 296 2 183 80 0 0 chr12 141989389 141989414 -1797041 + (T)n Simple_repeat Simple_repeat 1 25 0 340 330 43 17 chr12 141989544 141989777 -1796678 - L1ME3A LINE L1 -318 5852 5614 292 307 0 0 chr12 141989803 141989891 -1796564 - L1ME3A LINE L1 -615 5551 5464 902 290 67 6 chr12 141990095 141990454 -1796001 + L2 LINE L2 2597 2977 -337 278 193 22 138 chr12 141990698 141990879 -1795576 + L2 LINE L2 3083 3242 -71 8486 29 6 0 chr12 141991195 141992455 -1794000 - L1P2 LINE L1 -502 5653 4390 3930 29 2 2 chr12 141992453 141992909 -1793546 + L1P2 LINE L1 3926 4381 -1765 * 2104 127 7 0 chr12 141992912 141993203 -1793252 - AluSx SINE Alu -19 293 1 372 305 17 0 chr12 141993203 141993321 -1793134 + MIR SINE MIR 119 238 -24 1077 124 0 67 chr12 141993504 141993682 -1792773 - FRAM SINE Alu 0 166 1 310 325 137 70 chr12 141993918 141994275 -1792180 + L2 LINE L2 2890 3270 -2 1046 240 119 44 chr12 141994344 141994732 -1791723 - MLT1K LTR MaLR -20 568 152 207 354 48 34 chr12 141994985 141995132 -1791323 - L2 LINE L2 -497 2817 2669 189 0 0 0 chr12 141995383 141995404 -1791051 + (TG)n Simple_repeat Simple_repeat 2 22 0 712 186 173 0 chr12 141996543 141996699 -1789756 + MER5A DNA MER1_type 6 188 -1 240 303 8 61 chr12 141997626 141997758 -1788697 - MIR SINE MIR -12 250 126 6525 154 24 15 chr12 141998356 141999466 -1786989 + Tigger1 DNA MER2_type 2 1121 -1297 2763 75 6 0 chr12 141999466 141999814 -1786641 + L1PA8 LINE L1 5823 6172 0 2831 138 57 73 chr12 141999866 142000077 -1786378 + Tigger1 DNA MER2_type 1867 2080 -338 2233 80 31 0 chr12 142000077 142000364 -1786091 - AluSq SINE Alu -17 296 1 2831 138 57 73 chr12 142000364 142000522 -1785933 + Tigger1 DNA MER2_type 2080 2239 -179 2136 140 0 3 chr12 142000522 142000836 -1785619 - AluSq SINE Alu 0 313 1 2831 138 57 73 chr12 142000836 142001024 -1785431 + Tigger1 DNA MER2_type 2239 2416 -2 234 245 20 0 chr12 142001041 142001090 -1785365 + L2 LINE L2 3244 3293 -20 374 233 48 104 chr12 142001494 142001745 -1784710 - MIR SINE MIR -13 249 16 231 305 160 15 chr12 142002147 142002278 -1784177 - L2 LINE L2 0 3313 3164 223 283 38 19 chr12 142002429 142002535 -1783920 - L2 LINE L2 -322 2950 2843 510 277 81 21 chr12 142002737 142002972 -1783483 - MER20B DNA MER1_type 0 783 535 1221 282 16 21 chr12 142003020 142003407 -1783048 - MER20B DNA MER1_type -364 419 35 183 129 0 0 chr12 142004153 142004184 -1782271 + (GGA)n Simple_repeat Simple_repeat 2 32 0 190 368 32 0 chr12 142004516 142004611 -1781844 + L2 LINE L2 2928 3025 -247 640 291 13 0 chr12 142004975 142005126 -1781329 - L2 LINE L2 -1 3312 3160 855 326 74 40 chr12 142005130 142005603 -1780852 + MLT1K LTR MaLR 76 564 -24 2483 60 3 0 chr12 142005739 142006038 -1780417 + AluY SINE Alu 1 300 -11 1806 169 7 10 chr12 142006232 142006540 -1779915 + AluJb SINE Alu 1 307 -5 308 299 13 38 chr12 142008856 142009013 -1777442 + L2 LINE L2 3160 3312 -1 2082 126 0 0 chr12 142009497 142009783 -1776672 + AluSx SINE Alu 14 299 -13 1786 192 7 3 chr12 142010072 142010369 -1776086 + AluJb SINE Alu 1 298 -14 279 273 87 25 chr12 142010469 142010630 -1775825 - LTR33 LTR ERVL -59 462 292 2189 118 7 0 chr12 142010701 142011007 -1775448 - AluSx SINE Alu -4 308 1 368 307 69 10 chr12 142013131 142013333 -1773122 - L2 LINE L2 -382 2932 2719 223 231 0 64 chr12 142014318 142014396 -1772059 + MIR SINE MIR 173 245 -17 232 254 16 16 chr12 142014653 142014716 -1771739 + MIR SINE MIR 199 261 -1 283 275 57 74 chr12 142014834 142015063 -1771392 - MLT1K LTR MaLR -11 577 353 2175 134 0 0 chr12 142016080 142016378 -1770077 - AluSx SINE Alu -14 298 1 417 254 25 0 chr12 142016577 142016699 -1769756 - MLT1J2 LTR MaLR -315 135 11 286 240 174 73 chr12 142017105 142017285 -1769170 - MER102a DNA MER1_type -1113 304 85 1992 72 15 98 chr12 142017285 142017620 -1768835 + AluSq SINE Alu 1 307 -6 286 240 174 73 chr12 142017620 142017714 -1768741 - MER102a DNA MER1_type -1332 85 2 452 289 47 28 chr12 142067920 142068173 -1718282 + HAL1 LINE L1 2244 2501 -6 203 32 65 0 chr12 142068333 142068364 -1718091 + T-rich Low_complexity Low_complexity 1 33 0 620 292 25 79 chr12 142069052 142069408 -1717047 - MLT1I LTR MaLR 0 409 73 957 176 21 27 chr12 142069570 142069758 -1716697 - MER20B DNA MER1_type -32 187 1 225 263 147 11 chr12 142069915 142070010 -1716445 - HAL1 LINE L1 -588 1919 1812 1417 132 19 0 chr12 142070269 142070482 -1715973 + AluSx SINE Alu 1 217 -95 22 0 0 0 chr12 142070501 142070523 -1715932 + AT_rich Low_complexity Low_complexity 1 22 0 549 279 42 38 chr12 142070643 142070880 -1715575 + MIR SINE MIR 1 238 -24 205 291 12 23 chr12 142070975 142071061 -1715394 + MIR SINE MIR 51 135 -73 781 276 22 0 chr12 142071101 142071333 -1715122 + MIR SINE MIR 24 260 -2 474 297 69 5 chr12 142072231 142072433 -1714022 - Charlie8 DNA MER1_type -2200 217 3 234 0 0 0 chr12 142072945 142072971 -1713484 + (TA)n Simple_repeat Simple_repeat 2 27 0 36 0 0 0 chr12 142073216 142073252 -1713203 + AT_rich Low_complexity Low_complexity 1 36 0 2999 47 3 0 chr12 142073252 142073614 -1712841 - L1PA5 LINE L1 -9 6145 5783 1506 221 21 24 chr12 142073993 142074368 -1712087 - L1MB8 LINE L1 -9 6169 5796 513 291 41 0 chr12 142074438 142074610 -1711845 + Charlie8 DNA MER1_type 12 190 -2227 456 290 139 13 chr12 142076266 142076504 -1709951 + L2 LINE L2 2181 2448 -866 526 326 11 11 chr12 142077640 142077830 -1708625 + MIR SINE MIR 59 248 -14 2222 109 0 0 chr12 142077830 142078113 -1708342 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr12 142078113 142078136 -1708319 + (TA)n Simple_repeat Simple_repeat 1 23 0 321 68 0 0 chr12 142079320 142079364 -1707091 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 844 102 0 0 chr12 142079390 142079508 -1706947 - MER41B LTR ERV1 -1 634 517 3403 69 0 0 chr12 142079508 142080001 -1706454 - L1P3 LINE L1 -497 5675 5183 2703 110 93 0 chr12 142080007 142080416 -1706039 - MER41C LTR ERV1 -107 447 1 18885 103 8 9 chr12 142080416 142083033 -1703422 - MER41C-int LTR ERV1 0 7756 5141 1640 112 0 9 chr12 142083033 142083265 -1703190 - MER41C-int LTR ERV1 -3133 4623 4394 * 3248 94 70 0 chr12 142083260 142083716 -1702739 - MER41C-int LTR ERV1 -4701 3055 2568 195 42 0 0 chr12 142083719 142083743 -1702712 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 9836 88 7 1 chr12 142083743 142085904 -1700551 - L1PA8 LINE L1 -24 6148 3980 5750 99 4 2 chr12 142085904 142086741 -1699714 + L1P LINE L1 3040 3877 -2269 8644 124 42 15 chr12 142086741 142088116 -1698339 - MER41C-int LTR ERV1 -6341 1415 4 3133 91 59 131 chr12 142088204 142088501 -1697954 - MER41C LTR ERV1 0 554 237 1894 100 19 97 chr12 142088501 142088822 -1697633 - AluSx SINE Alu -15 297 2 3133 91 59 131 chr12 142088822 142088867 -1697588 - MER41C LTR ERV1 -317 237 190 9416 25 1 0 chr12 142088867 142090723 -1695732 - L1PA4 LINE L1 -3 6152 4295 3133 91 59 131 chr12 142090723 142090975 -1695480 - MER41C LTR ERV1 -364 190 2 225 330 54 27 chr12 142090975 142091087 -1695368 + MER5B DNA MER1_type 64 178 0 3645 82 2 24 chr12 142091635 142092145 -1694310 + L1PA4 LINE L1 5657 6155 0 231 204 0 0 chr12 142093104 142093153 -1693302 + CT-rich Low_complexity Low_complexity 2 50 0 1530 173 16 0 chr12 142093157 142093406 -1693049 - AluSx SINE Alu -1 311 59 242 216 14 0 chr12 142093432 142093506 -1692949 + CT-rich Low_complexity Low_complexity 2 76 0 348 24 0 0 chr12 142094979 142095020 -1691435 + (TG)n Simple_repeat Simple_repeat 2 42 0 2027 119 24 3 chr12 142095864 142096157 -1690298 - AluSg SINE Alu -11 299 1 891 263 20 81 chr12 142096323 142096680 -1689775 - MLT1J LTR MaLR -77 434 100 209 195 24 0 chr12 142096763 142096804 -1689651 - MIR SINE MIR -59 149 108 375 253 44 44 chr12 142096910 142097015 -1689440 + MIR SINE MIR 101 208 -54 2046 148 0 19 chr12 142097015 142097325 -1689130 + AluSx SINE Alu 1 304 -8 375 253 44 44 chr12 142097325 142097377 -1689078 + MIR SINE MIR 207 258 -4 1738 127 88 0 chr12 142097563 142097848 -1688607 + AluSx SINE Alu 1 308 0 289 313 10 0 chr12 142098162 142098261 -1688194 + L1ME LINE L1 5484 5583 -538 24 0 0 29 chr12 142098290 142098302 -1688153 + AT_rich Low_complexity Low_complexity 1 12 -22 2173 138 3 0 chr12 142098302 142098613 -1687842 - AluSx SINE Alu 0 312 1 24 0 0 29 chr12 142098613 142098635 -1687820 + AT_rich Low_complexity Low_complexity 12 34 0 274 297 27 18 chr12 142098672 142098783 -1687672 - MLT1J LTR MaLR -325 186 75 209 309 25 0 chr12 142098894 142098975 -1687480 - L2 LINE L2 -798 2516 2434 514 287 119 17 chr12 142099029 142099322 -1687133 - L1ME LINE L1 -392 5729 5407 917 188 24 19 chr12 142099413 142099626 -1686829 - L1MB2 LINE L1 -1 6170 5957 22 35 0 0 chr12 142100061 142100090 -1686365 + AT_rich Low_complexity Low_complexity 1 29 0 956 148 7 0 chr12 142100381 142100523 -1685932 - AluSq/x SINE Alu -170 143 1 2211 126 26 100 chr12 142101618 142102080 -1684375 - MSTC LTR MaLR 0 428 1 187 122 41 0 chr12 142103403 142103452 -1683003 + (TA)n Simple_repeat Simple_repeat 2 52 0 515 289 53 5 chr12 142103468 142103658 -1682797 - MIR SINE MIR -49 213 15 657 272 119 54 chr12 142104210 142104845 -1681610 - L2 LINE L2 -144 3169 2483 758 219 86 11 chr12 142104882 142105069 -1681386 + MER3 DNA MER1_type 4 204 -5 545 274 6 12 chr12 142105129 142105293 -1681162 + LTR33 LTR ERVL 4 166 -355 1185 233 16 46 chr12 142105388 142105761 -1680694 + MER20B DNA MER1_type 417 778 -5 1086 224 75 25 chr12 142105764 142106085 -1680370 - MER58B DNA MER1_type -2 339 3 203 307 57 29 chr12 142107046 142107186 -1679269 + L2 LINE L2 3008 3151 -162 434 263 35 29 chr12 142107354 142107525 -1678930 + MIR SINE MIR 78 249 -13 2162 114 3 3 chr12 142107606 142107903 -1678552 - AluSg1 SINE Alu -12 297 1 211 269 250 28 chr12 142110067 142110175 -1676280 - MIR SINE MIR -119 143 12 220 278 56 28 chr12 142110347 142110419 -1676036 - MIR SINE MIR -119 143 70 2561 43 0 10 chr12 142110592 142110893 -1675562 + AluY SINE Alu 1 298 -13 224 405 9 26 chr12 142111217 142111333 -1675122 - L3 LINE CR1 -53 1524 1411 264 59 0 0 chr12 142111451 142111485 -1674970 + (TAGG)n Simple_repeat Simple_repeat 2 35 0 269 362 56 53 chr12 142111535 142111949 -1674506 + L2 LINE L2 2452 2866 -448 531 343 58 32 chr12 142112212 142112676 -1673779 - L3 LINE CR1 -474 1103 628 398 326 76 5 chr12 142112725 142112909 -1673546 + L2 LINE L2 2043 2239 -1075 2765 243 104 5 chr12 142112951 142113644 -1672811 + L1PB1 LINE L1 138 927 -5936 198 0 0 0 chr12 142113644 142113666 -1672789 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2765 243 104 5 chr12 142113666 142113795 -1672660 + L1PB1 LINE L1 927 1042 -5821 5467 192 18 15 chr12 142113834 142117552 -1668903 + L1PB1 LINE L1 1298 5181 -1686 300 53 0 0 chr12 142117552 142117590 -1668865 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5467 192 18 15 chr12 142117590 142119278 -1667177 + L1PB1 LINE L1 5181 6864 -3 687 282 190 3 chr12 142119287 142119592 -1666863 + L2 LINE L2 2236 2597 -717 240 214 0 128 chr12 142119585 142119702 -1666753 + L2 LINE L2 3137 3238 -75 * 1262 91 0 6 chr12 142119718 142119894 -1666561 + AluY SINE Alu 137 311 0 758 331 70 37 chr12 142120082 142121013 -1665442 + L2 LINE L2 2346 3308 -5 2503 11 0 0 chr12 142121224 142121492 -1664963 - AluY SINE Alu 0 311 44 364 286 153 51 chr12 142121789 142121985 -1664470 + LTR33 LTR ERVL 1 216 -305 239 229 66 0 chr12 142122036 142122097 -1664358 + LTR33 LTR ERVL 331 395 -126 355 258 87 68 chr12 142124583 142124963 -1661492 - L2 LINE L2 -604 2710 2324 306 224 15 0 chr12 142125743 142125810 -1660645 + MER103 DNA DNA 22 89 -77 391 330 14 24 chr12 142126596 142126805 -1659650 - MIR SINE MIR 0 262 56 314 250 31 21 chr12 142127245 142127341 -1659114 - L2 LINE L2 -8 3264 3168 2133 126 20 0 chr12 142127488 142127789 -1658666 + AluSx SINE Alu 1 307 -5 2473 182 23 49 chr12 142128290 142128818 -1657637 + MLT2B2 LTR ERVL 1 514 -1 186 210 109 80 chr12 142129273 142129411 -1657044 - L2 LINE L2 -686 2628 2487 2264 99 10 0 chr12 142130037 142130339 -1656116 + AluSx SINE Alu 1 305 -7 501 283 89 40 chr12 142130566 142130813 -1655642 + MIR SINE MIR 1 259 -3 699 279 75 27 chr12 142131316 142131610 -1654845 + MLT1D LTR MaLR 2 309 -196 625 195 90 42 chr12 142131825 142131992 -1654463 + MLT1D LTR MaLR 317 555 0 667 281 149 35 chr12 142133019 142133465 -1652990 - MLT1K LTR MaLR -27 588 48 2167 164 15 59 chr12 142133661 142134136 -1652319 + L1MA6 LINE L1 5847 6300 0 517 257 57 48 chr12 142134537 142134747 -1651708 + MLT1I LTR MaLR 198 409 0 274 239 0 14 chr12 142135019 142135090 -1651365 + LTR67 LTR ERVL 471 540 -17 336 318 87 8 chr12 142137296 142137422 -1649033 - L2 LINE L2 0 3272 3137 211 225 28 0 chr12 142137422 142137493 -1648962 + GA-rich Low_complexity Low_complexity 4 76 0 10368 40 2 1 chr12 142137675 142139658 -1646797 - L1PA4 LINE L1 -11 6144 4145 570 329 86 23 chr12 142139672 142140101 -1646354 - L2 LINE L2 -375 2939 2484 452 244 15 8 chr12 142140218 142140482 -1645973 + GA-rich Low_complexity Low_complexity 1 266 0 521 302 94 18 chr12 142140482 142140813 -1645642 - L2 LINE L2 -1134 2180 1825 683 288 155 27 chr12 142140815 142141260 -1645195 - L2 LINE L2 0 3313 2812 825 283 85 40 chr12 142141562 142141775 -1644680 + MLT1K LTR MaLR 86 288 -300 4479 117 6 0 chr12 142141775 142142436 -1644019 - L1PB1 LINE L1 -2 6149 5485 2075 131 0 0 chr12 142142445 142142736 -1643719 - AluJb SINE Alu -17 295 5 825 283 85 40 chr12 142142736 142142993 -1643462 + MLT1K LTR MaLR 295 588 0 210 143 29 0 chr12 142143181 142143216 -1643239 + CT-rich Low_complexity Low_complexity 4 39 0 556 273 20 13 chr12 142143317 142143467 -1642988 + MIR SINE MIR 10 160 -102 676 255 109 57 chr12 142143625 142143993 -1642462 - LTR33 LTR ERVL -133 388 2 590 306 89 45 chr12 142144120 142144434 -1642021 + MER102a DNA MER1_type 3 330 0 192 255 123 38 chr12 142144786 142144892 -1641563 + L2 LINE L2 1536 1650 -1664 2153 159 18 26 chr12 142144916 142145265 -1641190 + MLT1B LTR MaLR 1 348 -42 2562 112 5 14 chr12 142145265 142145632 -1640823 - THE1B LTR MaLR 0 364 1 2153 159 18 26 chr12 142145632 142145673 -1640782 + MLT1B LTR MaLR 348 388 -2 4231 107 10 5 chr12 142145701 142146328 -1640127 + L1PB2 LINE L1 5522 6151 0 1024 305 145 47 chr12 142146329 142147541 -1638914 + L2 LINE L2 1697 3032 -281 547 279 166 26 chr12 142147621 142147965 -1638490 + LTR16A1 LTR ERVL 66 457 0 238 283 156 40 chr12 142147967 142148140 -1638315 + L2 LINE L2 3087 3279 -34 412 310 38 33 chr12 142148577 142148761 -1637694 - MIR SINE MIR -44 218 34 665 304 98 53 chr12 142148830 142149248 -1637207 - MLT1K LTR MaLR -18 570 134 2627 58 0 10 chr12 142149338 142149650 -1636805 + AluY SINE Alu 1 309 -2 1073 79 0 29 chr12 142149986 142150125 -1636330 + AluSq/x SINE Alu 1 135 -177 2090 134 0 3 chr12 142150125 142150424 -1636031 + AluSx SINE Alu 1 298 -14 861 92 0 0 chr12 142150646 142150755 -1635700 + AluSg/x SINE Alu 180 288 -24 411 187 90 22 chr12 142151227 142151361 -1635094 - MER53 DNA DNA -44 145 3 389 253 105 37 chr12 142151364 142151548 -1634907 + MLT1K LTR MaLR 382 579 -4 2560 129 43 24 chr12 142151548 142151968 -1634487 - MSTA LTR MaLR 0 428 1 622 240 83 9 chr12 142152207 142152436 -1634019 - MIR SINE MIR -8 254 9 894 154 24 0 chr12 142152488 142152657 -1633798 - L1MA4 LINE L1 -4 6296 6124 26 0 0 0 chr12 142153618 142153644 -1632811 + AT_rich Low_complexity Low_complexity 1 26 0 5856 32 1 1 chr12 142153644 142154335 -1632120 - L1PA4 LINE L1 0 6155 5465 801 297 60 42 chr12 142154779 142155180 -1631275 - MLT1J2 LTR MaLR -4 446 39 2069 133 3 7 chr12 142155463 142155771 -1630684 - AluSx SINE Alu -1 311 5 264 161 0 81 chr12 142156421 142156483 -1629972 - MARNA DNA Mariner -389 197 141 266 262 59 107 chr12 142156602 142157041 -1629414 + LTR33 LTR ERVL 104 521 0 419 295 8 16 chr12 142157051 142157180 -1629275 + LTR67 LTR ERVL 428 555 -2 237 108 0 0 chr12 142157276 142157313 -1629142 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 854 85 115 0 chr12 142157795 142157925 -1628530 - L1PA13 LINE L1 -376 5787 5643 2375 123 57 8 chr12 142157927 142158293 -1628162 + L1PA13 LINE L1 5778 6161 -2 28 29 0 0 chr12 142158952 142158987 -1627468 + AT_rich Low_complexity Low_complexity 1 35 0 2068 137 0 32 chr12 142160064 142160378 -1626077 - AluSx SINE Alu -8 304 1 654 281 57 44 chr12 142160753 142161070 -1625385 - MER102b DNA MER1_type -10 331 11 2095 170 27 12 chr12 142161276 142161694 -1624761 + L1MC1 LINE L1 5645 6001 -241 2145 32 0 4 chr12 142161795 142162043 -1624412 - AluY SINE Alu -64 247 1 189 74 0 0 chr12 142162763 142162790 -1623665 + (TAA)n Simple_repeat Simple_repeat 3 29 0 385 252 6 38 chr12 142163626 142163785 -1622670 + L1 LINE L1 2245 2398 -3748 740 294 65 61 chr12 142164274 142164736 -1621719 - L2 LINE L2 -3 3310 2847 670 158 15 8 chr12 142164811 142164944 -1621511 - L1 LINE L1 -830 5316 5183 234 91 0 0 chr12 142164964 142164997 -1621458 + (T)n Simple_repeat Simple_repeat 1 33 0 360 308 42 85 chr12 142165077 142165431 -1621024 - L2 LINE L2 -674 2640 2302 390 236 65 16 chr12 142165948 142166071 -1620384 + L1ME4a LINE L1 5979 6107 -14 256 275 12 12 chr12 142166113 142166193 -1620262 + MLT1L LTR MaLR 4 83 -532 1338 259 82 14 chr12 142166252 142166680 -1619775 - MLT1C LTR MaLR 0 467 11 913 209 5 10 chr12 142166689 142166885 -1619570 + L1MB2 LINE L1 4904 5098 -1048 5021 175 13 21 chr12 142166907 142167831 -1618624 + L1MB2 LINE L1 5254 6170 -1 1036 235 52 54 chr12 142168173 142168243 -1618212 + L1 LINE L1 2626 2695 -3451 1565 106 0 5 chr12 142168243 142168451 -1618004 - AluSq SINE Alu -106 207 1 1036 235 52 54 chr12 142168451 142168767 -1617688 + L1 LINE L1 2695 3011 -3135 5188 170 26 28 chr12 142168949 142169605 -1616850 + L1 LINE L1 3679 4335 -1811 2405 104 0 0 chr12 142169605 142169913 -1616542 - AluSg SINE Alu -2 308 1 5188 170 26 28 chr12 142169913 142169969 -1616486 + L1 LINE L1 4335 4390 -1756 207 0 0 0 chr12 142169969 142169992 -1616463 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 405 58 0 0 chr12 142169991 142170043 -1616412 + (CA)n Simple_repeat Simple_repeat 1 52 0 5188 170 26 28 chr12 142169992 142170384 -1616071 + L1 LINE L1 4390 4731 -1415 1709 228 93 8 chr12 142170381 142170864 -1615591 + L1ME1 LINE L1 5571 6094 -72 * 274 207 37 12 chr12 142170919 142171001 -1615454 + L1MB7 LINE L1 6093 6176 -8 1228 128 0 0 chr12 142172355 142172527 -1613928 + AluSq SINE Alu 134 305 -8 25 31 0 0 chr12 142172527 142172559 -1613896 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr12 142172831 142172857 -1613598 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1651 158 52 83 chr12 142173113 142173500 -1612955 + THE1C LTR MaLR 1 375 0 741 236 23 0 chr12 142173949 142174123 -1612332 + MER5B DNA MER1_type 1 178 0 533 248 7 39 chr12 142174128 142174281 -1612174 - MER5B DNA MER1_type -29 149 2 332 233 14 0 chr12 142174422 142174495 -1611960 - tRNA-Ile-ATT tRNA tRNA -3 74 1 203 308 31 46 chr12 142174999 142175129 -1611326 - L2 LINE L2 -83 3230 3103 184 313 16 0 chr12 142175148 142175212 -1611243 - L2 LINE L2 -700 2614 2550 904 232 61 11 chr12 142175317 142175380 -1611075 + L1MD2 LINE L1 6082 6140 -219 213 39 0 0 chr12 142175380 142175406 -1611049 + (CA)n Simple_repeat Simple_repeat 1 26 0 904 232 61 11 chr12 142175406 142175605 -1610850 + L1MD2 LINE L1 6140 6357 -2 1318 281 93 21 chr12 142175807 142176377 -1610078 - HsTC2a DNA Tc2 0 744 134 204 40 0 0 chr12 142176593 142176618 -1609837 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 187 327 26 26 chr12 142178486 142178599 -1607856 + L2 LINE L2 2937 3049 -264 1451 175 4 4 chr12 142178599 142178856 -1607599 - MLT1B LTR MaLR 0 390 134 1120 255 19 11 chr12 142178857 142179181 -1607274 - MER93b LTR ERV1 0 373 61 464 180 60 0 chr12 142179290 142179390 -1607065 - MLT1B LTR MaLR -256 134 29 2647 119 11 16 chr12 142179395 142179772 -1606683 + THE1C LTR MaLR 1 375 0 484 298 36 18 chr12 142179970 142180138 -1606317 + MER5B DNA MER1_type 6 176 -2 386 247 17 107 chr12 142180150 142180328 -1606127 + MER5B DNA MER1_type 17 178 0 606 222 44 56 chr12 142180422 142180602 -1605853 + MER5B DNA MER1_type 1 178 0 1219 243 91 23 chr12 142181503 142181670 -1604785 + MLT1A2 LTR MaLR 1 155 -219 243 0 0 0 chr12 142181670 142181697 -1604758 + (TC)n Simple_repeat Simple_repeat 2 28 0 1219 243 91 23 chr12 142181697 142181879 -1604576 + MLT1A2 LTR MaLR 155 374 0 2362 60 3 0 chr12 142182287 142182616 -1603839 - AluY SINE Alu 0 330 1 281 143 82 0 chr12 142182952 142182996 -1603459 - MLT1D LTR MaLR -8 497 450 2295 118 12 59 chr12 142182996 142183500 -1602955 - MER1A DNA MER1_type 0 529 60 1032 206 0 32 chr12 142183500 142183689 -1602766 - MER1A DNA MER1_type -344 183 1 818 222 11 23 chr12 142183689 142183863 -1602592 - MLT1D LTR MaLR -48 457 286 1072 161 11 0 chr12 142183836 142184010 -1602445 - MLT2B2 LTR ERVL -339 176 1 185 94 31 0 chr12 142184243 142184275 -1602180 + (CAT)n Simple_repeat Simple_repeat 1 33 0 348 285 15 36 chr12 142184508 142184645 -1601810 - MIR SINE MIR -101 161 28 871 294 103 3 chr12 142184706 142185026 -1601429 - L1ME3A LINE L1 -8 6162 5811 249 306 14 14 chr12 142186213 142186285 -1600170 - LTR67 LTR ERVL -372 185 114 1720 161 39 3 chr12 142186448 142186734 -1599721 - AluSx SINE Alu -16 296 1 194 291 165 38 chr12 142186779 142186937 -1599518 + MER5B DNA MER1_type 1 178 0 180 77 0 0 chr12 142187359 142187385 -1599070 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 304 237 243 33 chr12 142187628 142187780 -1598675 + MER5A DNA MER1_type 4 187 -2 2265 103 0 34 chr12 142188082 142188402 -1598053 - AluSq SINE Alu -4 309 1 247 326 22 0 chr12 142189263 142189398 -1597057 + (CCCTAA)n Simple_repeat Simple_repeat 3 140 0 272 196 0 18 chr12 142189627 142189683 -1596772 + HERVK9 LTR ERVK 2140 2194 -3722 1285 268 52 56 chr12 142189880 142190700 -1595755 + HERVK9 LTR ERVK 2647 3554 -2548 353 116 93 70 chr12 142192160 142192246 -1594209 + L1PA12 LINE L1 6081 6168 0 2114 103 0 11 chr12 142192331 142192642 -1593813 + AluSg SINE Alu 1 308 0 457 145 0 0 chr12 142192644 142192713 -1593742 + THE1C LTR MaLR 307 375 0 532 309 57 0 chr12 142192741 142192935 -1593520 - MER3 DNA MER1_type 0 209 5 2338 99 0 6 chr12 142193759 142194073 -1592382 + AluSx SINE Alu 1 312 0 2262 57 57 0 chr12 142195086 142195367 -1591088 - AluY SINE Alu -14 297 1 2359 88 0 0 chr12 142196356 142196653 -1589802 - AluY SINE Alu -14 297 1 850 161 6 6 chr12 142196775 142196955 -1589500 + (CAT)n Simple_repeat Simple_repeat 1 180 0 2984 161 55 7 chr12 142197059 142197618 -1588837 - L1MA4 LINE L1 -5 6295 5710 536 261 69 76 chr12 142198019 142198310 -1588145 + MER102a DNA MER1_type 41 329 -1 400 267 114 89 chr12 142199126 142199519 -1586936 - MLT1J LTR MaLR -84 427 25 21 0 0 0 chr12 142199618 142199639 -1586816 + AT_rich Low_complexity Low_complexity 1 21 0 194 189 0 19 chr12 142199650 142199703 -1586752 + GA-rich Low_complexity Low_complexity 2 53 0 235 327 19 9 chr12 142199880 142199987 -1586468 + (TA)n Simple_repeat Simple_repeat 2 109 0 2000 151 0 22 chr12 142200124 142200443 -1586012 + AluSx SINE Alu 1 312 0 298 176 56 56 chr12 142200482 142200590 -1585865 - MLT1K LTR MaLR -86 502 395 249 288 15 0 chr12 142200922 142200988 -1585467 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3056 129 5 0 chr12 142201595 142202020 -1584435 - MSTA LTR MaLR -1 427 1 50 65 0 0 chr12 142202092 142202184 -1584271 + AT_rich Low_complexity Low_complexity 1 92 0 592 290 69 55 chr12 142202307 142202728 -1583727 + LTR16A LTR ERVL 13 439 -11 255 289 108 0 chr12 142203395 142203478 -1582977 + L2 LINE L2 3179 3270 -43 494 226 104 0 chr12 142203802 142203917 -1582538 + MER91C DNA MER1_type 2 128 -12 296 309 107 13 chr12 142203940 142204089 -1582366 - MIR SINE MIR -98 164 2 23 0 0 0 chr12 142205634 142205657 -1580798 + AT_rich Low_complexity Low_complexity 1 23 0 272 302 39 34 chr12 142207997 142208176 -1578279 + MER20B DNA MER1_type 43 222 -561 313 143 193 92 chr12 142208456 142208575 -1577880 + MER20B DNA MER1_type 515 645 -138 631 268 148 0 chr12 142208575 142208758 -1577697 - MER58C DNA MER1_type 0 215 6 1957 178 66 23 chr12 142208807 142209246 -1577209 - L1MB4 LINE L1 -29 6151 5694 201 333 131 45 chr12 142209326 142209524 -1576931 + L2 LINE L2 2872 3086 -186 730 217 13 20 chr12 142209672 142209824 -1576631 + MER63A DNA MER1_type 35 185 -25 189 347 0 0 chr12 142209869 142209941 -1576514 + L2 LINE L2 3200 3271 -1 233 119 24 0 chr12 142210521 142210563 -1575892 + CT-rich Low_complexity Low_complexity 1 43 0 576 136 20 27 chr12 142210598 142210745 -1575710 + CT-rich Low_complexity Low_complexity 2 147 0 700 193 23 0 chr12 142210769 142210945 -1575510 + CT-rich Low_complexity Low_complexity 1 180 0 2319 108 0 3 chr12 142210945 142211252 -1575203 - AluY SINE Alu -5 306 1 189 0 0 0 chr12 142211255 142211276 -1575179 + (TCCCC)n Simple_repeat Simple_repeat 3 23 0 191 317 122 14 chr12 142211435 142211656 -1574799 + L2 LINE L2 2454 2698 -616 1684 211 30 11 chr12 142211686 142212050 -1574405 + MLT1A2 LTR MaLR 2 372 -2 2188 143 48 82 chr12 142212244 142212639 -1573816 + MSTB LTR MaLR 1 382 -44 2081 114 7 0 chr12 142212639 142212946 -1573509 + AluSx SINE Alu 1 309 0 2188 143 48 82 chr12 142212946 142212989 -1573466 + MSTB LTR MaLR 382 425 -1 818 247 64 25 chr12 142213023 142213370 -1573085 + L2 LINE L2 2736 3105 -208 887 144 0 0 chr12 142214437 142214569 -1571886 + FRAM SINE Alu 36 167 -9 634 257 78 10 chr12 142215343 142215539 -1570916 + MIR SINE MIR 3 210 -52 1849 176 0 7 chr12 142215542 142215848 -1570607 - AluJb SINE Alu -4 308 5 1668 60 0 15 chr12 142216583 142216783 -1569672 + MER107 DNA MER1_type 1 197 0 213 39 0 0 chr12 142217241 142217267 -1569188 + (CA)n Simple_repeat Simple_repeat 1 26 0 973 208 8 17 chr12 142217535 142217765 -1568690 + MSTD LTR MaLR 3 231 -217 237 159 0 0 chr12 142217747 142217791 -1568664 + MSTD LTR MaLR 136 179 -217 * 240 159 0 0 chr12 142217847 142217891 -1568564 + MSTD LTR MaLR 136 179 -217 233 200 67 67 chr12 142217890 142217965 -1568490 + MSTD LTR MaLR 116 190 -206 * 1225 214 32 32 chr12 142217970 142218251 -1568204 + MSTD LTR MaLR 116 396 0 420 20 0 0 chr12 142218256 142218305 -1568150 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 784 254 130 45 chr12 142218638 142218993 -1567462 + MLT1L LTR MaLR 219 603 -12 302 350 10 0 chr12 142218999 142219096 -1567359 + L2 LINE L2 3170 3267 -5 330 274 82 37 chr12 142220614 142220749 -1565706 - MLT1J LTR MaLR -242 269 129 288 132 64 24 chr12 142221029 142221281 -1565174 + (TA)n Simple_repeat Simple_repeat 1 262 0 362 209 7 0 chr12 142221317 142221456 -1564999 + (TA)n Simple_repeat Simple_repeat 1 140 0 397 304 92 5 chr12 142221774 142221981 -1564474 - L1ME LINE L1 -518 5652 5428 1012 233 59 7 chr12 142222126 142222396 -1564059 - L1MB8 LINE L1 -1 6177 5894 24 0 0 0 chr12 142223122 142223146 -1563309 + AT_rich Low_complexity Low_complexity 1 24 0 236 98 0 24 chr12 142223820 142223861 -1562594 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 258 357 21 47 chr12 142223972 142224207 -1562248 + Charlie8 DNA MER1_type 30 258 -2159 465 258 30 76 chr12 142224372 142224570 -1561885 - MER5A DNA MER1_type 0 189 1 2283 95 3 3 chr12 142224778 142225073 -1561382 + AluSp SINE Alu 1 295 -18 2368 96 0 0 chr12 142225079 142225380 -1561075 + AluSx SINE Alu 1 301 -11 439 214 0 129 chr12 142225382 142225522 -1560933 + MER5B DNA MER1_type 57 178 0 272 250 204 15 chr12 142225668 142225800 -1560655 - L1MEd LINE L1 -4889 1230 1074 242 230 135 0 chr12 142225818 142225892 -1560563 + MIR SINE MIR 168 251 -11 344 254 92 79 chr12 142226089 142226329 -1560126 - MIR SINE MIR -1 261 19 310 293 0 20 chr12 142226518 142226617 -1559838 + MLT1K LTR MaLR 455 551 -37 682 286 21 0 chr12 142226769 142226961 -1559494 - MER58A DNA MER1_type -28 196 1 435 360 21 0 chr12 142227199 142227388 -1559067 + MIR SINE MIR 7 199 -63 274 331 12 0 chr12 142227504 142227667 -1558788 + (TTG)n Simple_repeat Simple_repeat 1 165 0 * 349 325 6 6 chr12 142227548 142227714 -1558741 + (TTGGGG)n Simple_repeat Simple_repeat 4 169 0 236 348 0 22 chr12 142228250 142228434 -1558021 + (TTA)n Simple_repeat Simple_repeat 1 180 0 236 350 0 22 chr12 142228583 142228766 -1557689 + (TTA)n Simple_repeat Simple_repeat 1 179 0 200 350 0 22 chr12 142228802 142228985 -1557470 + (TTA)n Simple_repeat Simple_repeat 1 179 0 205 368 6 6 chr12 142229486 142229652 -1556803 + (TTA)n Simple_repeat Simple_repeat 1 166 0 260 337 0 27 chr12 142229655 142229839 -1556616 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 292 267 11 0 chr12 142229853 142229943 -1556512 + (TTA)n Simple_repeat Simple_repeat 2 92 0 334 354 0 6 chr12 142230131 142230312 -1556143 + (TGG)n Simple_repeat Simple_repeat 1 180 0 296 306 17 28 chr12 142230290 142230470 -1555985 + (TTGGGG)n Simple_repeat Simple_repeat 3 180 0 * 387 268 100 45 chr12 142232728 142232933 -1553522 - MLT1J2 LTR MaLR 0 409 238 953 270 72 13 chr12 142232978 142233282 -1553173 - L1MC4a LINE L1 0 7808 7487 665 177 0 0 chr12 142233305 142233401 -1553054 - FLAM_A SINE Alu -26 116 21 278 277 69 0 chr12 142233416 142233517 -1552938 - L1MC4 LINE L1 -467 7575 7468 2429 96 0 0 chr12 142233578 142233890 -1552565 - AluSq SINE Alu -1 312 1 4379 192 63 24 chr12 142233890 142234742 -1551713 - L1MB1 LINE L1 -14 6154 5229 207 100 0 0 chr12 142234742 142234772 -1551683 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4379 192 63 24 chr12 142234772 142235089 -1551366 - L1MB1 LINE L1 -939 5229 4926 1494 228 3 0 chr12 142235095 142235398 -1551057 + L1MB1 LINE L1 4644 4947 -1199 2164 230 105 28 chr12 142235405 142235593 -1550862 - L1MC4a LINE L1 -414 7394 7222 429 147 53 0 chr12 142235593 142235668 -1550787 - MADE1 DNA Mariner -1 79 1 2164 230 105 28 chr12 142235668 142236084 -1550371 - L1MC4a LINE L1 -586 7222 6737 2092 139 7 0 chr12 142236084 142236385 -1550070 - AluSx SINE Alu -9 303 1 2164 230 105 28 chr12 142236385 142236465 -1549990 - L1MC4a LINE L1 -1071 6737 6665 354 217 67 42 chr12 142236491 142236611 -1549844 - MLT1J2 LTR MaLR -313 137 15 2119 125 0 26 chr12 142237610 142237914 -1548541 - AluSx SINE Alu -16 296 1 2728 186 36 8 chr12 142238078 142238611 -1547844 - L1MB5 LINE L1 -8 6166 5619 247 263 188 23 chr12 142239125 142239258 -1547197 - MLT1J2 LTR MaLR -335 220 66 1820 92 0 0 chr12 142239660 142239889 -1546566 + AluSx SINE Alu 1 229 -83 311 303 8 25 chr12 142239895 142240014 -1546441 + L2 LINE L2 3194 3310 -3 240 170 0 0 chr12 142240018 142240071 -1546384 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 837 274 29 64 chr12 142241033 142241452 -1545003 - LTR16A1 LTR ERVL -2 455 52 27 29 0 0 chr12 142241713 142241747 -1544708 + AT_rich Low_complexity Low_complexity 1 34 0 183 42 0 0 chr12 142241762 142241786 -1544669 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 256 136 91 0 chr12 142242268 142242312 -1544143 - MLT2C2 LTR ERVL 0 464 417 234 154 33 33 chr12 142242337 142242428 -1544027 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 442 269 53 6 chr12 142242429 142242570 -1543885 - MLT2D LTR ERVL -26 489 353 300 276 54 89 chr12 142243973 142244176 -1542279 + Charlie8 DNA MER1_type 9 204 -2213 252 0 0 0 chr12 142247093 142247121 -1539334 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1638 197 0 3 chr12 142247839 142248157 -1538298 - AluJo SINE Alu 0 317 1 23 0 0 0 chr12 142248169 142248192 -1538263 + AT_rich Low_complexity Low_complexity 1 23 0 2543 49 0 3 chr12 142248246 142248550 -1537905 - AluY SINE Alu -8 303 1 258 229 0 0 chr12 142248862 142248932 -1537523 + A-rich Low_complexity Low_complexity 1 70 0 195 114 0 0 chr12 142248942 142248977 -1537478 + (G)n Simple_repeat Simple_repeat 1 35 0 25 105 0 0 chr12 142248977 142249053 -1537402 + GC_rich Low_complexity Low_complexity 1 76 0 250 318 0 37 chr12 142249116 142249223 -1537232 + C-rich Low_complexity Low_complexity 2 104 0 1036 173 26 0 chr12 142249440 142249631 -1536824 - MER2 DNA MER2_type -148 197 2 1299 109 0 0 chr12 142249691 142249865 -1536590 + AluSq SINE Alu 130 303 -10 1107 207 78 19 chr12 142250126 142250382 -1536073 - MLT2D LTR ERVL -143 271 1 547 278 70 59 chr12 142250455 142250898 -1535557 + HAL1 LINE L1 146 593 -1914 3949 126 6 0 chr12 142251372 142251896 -1534559 + MER1A DNA MER1_type 1 527 0 4323 133 17 36 chr12 142253096 142253787 -1532668 - L1PA16 LINE L1 -1 6165 5488 290 26 26 0 chr12 142253789 142253828 -1532627 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1997 142 0 0 chr12 142253828 142254110 -1532345 - AluSx SINE Alu -30 282 1 995 126 0 0 chr12 142254110 142254245 -1532210 - AluSq/x SINE Alu -178 135 1 462 146 12 0 chr12 142254245 142254327 -1532128 - L1PA16 LINE L1 -674 5491 5409 * 683 124 117 0 chr12 142254324 142254467 -1531988 + L1PA16 LINE L1 5237 5394 -752 368 255 11 0 chr12 142254758 142254852 -1531603 - MER5A DNA MER1_type -85 104 10 5390 77 0 5 chr12 142254965 142255629 -1530826 + L1PA8 LINE L1 5508 6168 -4 1464 179 6 69 chr12 142256347 142256682 -1529773 + L1MA9 LINE L1 5946 6259 -53 305 109 0 0 chr12 142256739 142256785 -1529670 + L1MA9 LINE L1 6262 6307 -5 266 315 152 6 chr12 142256889 142257067 -1529388 - L2 LINE L2 0 3313 3110 2332 146 30 30 chr12 142257734 142258098 -1528357 - THE1B LTR MaLR 0 364 1 2089 114 14 0 chr12 142258371 142258652 -1527803 - AluSq SINE Alu -28 285 1 1754 153 57 7 chr12 142259572 142259854 -1526601 + AluJo SINE Alu 1 296 -16 429 317 27 16 chr12 142259908 142260091 -1526364 + L1M4 LINE L1 4066 4250 -1896 717 279 35 0 chr12 142260609 142260835 -1525620 + LTR16A1 LTR ERVL 222 455 -2 240 170 0 0 chr12 142261797 142261850 -1524605 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 279 311 19 0 chr12 142261867 142261973 -1524482 - L2 LINE L2 -12 3301 3194 1664 122 0 4 chr12 142261979 142262209 -1524246 - AluSx SINE Alu -83 229 1 1073 79 0 29 chr12 142262209 142262348 -1524107 - AluSq/x SINE Alu -177 135 1 536 123 0 0 chr12 142262686 142262767 -1523688 - AluS SINE Alu -2 307 227 232 385 15 0 chr12 142262900 142263030 -1523425 + L2 LINE L2 2807 2938 -375 7301 118 70 6 chr12 142263044 142264600 -1521855 + L1P5 LINE L1 4145 5793 -358 2320 98 0 0 chr12 142264993 142265289 -1521166 + AluSx SINE Alu 1 296 -16 317 241 0 19 chr12 142266255 142266363 -1520092 + (CATATA)n Simple_repeat Simple_repeat 1 106 0 350 89 0 0 chr12 142266364 142266412 -1520043 + MLT2C1 LTR ERVL 349 391 -6 195 42 0 0 chr12 142267479 142267503 -1518952 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 6987 80 17 3 chr12 142267503 142268765 -1517690 - L1PA8 LINE L1 -24 6148 4874 237 396 14 0 chr12 142269607 142269751 -1516704 - MIR SINE MIR 0 262 117 372 279 68 7 chr12 142270490 142270637 -1515818 + MIR SINE MIR 58 213 -49 199 122 41 0 chr12 142270653 142270702 -1515753 + (TA)n Simple_repeat Simple_repeat 2 52 0 1631 192 29 104 chr12 142273192 142273635 -1512820 - MSTC LTR MaLR 0 428 19 1838 117 4 0 chr12 142325647 142325904 -1460551 - AluSx SINE Alu -16 296 39 592 263 40 62 chr12 142327180 142327404 -1459051 - MLT1K LTR MaLR 0 588 370 2388 52 0 0 chr12 142327507 142327797 -1458658 + AluY SINE Alu 2 291 -20 351 78 0 0 chr12 142328891 142328942 -1457513 + (CA)n Simple_repeat Simple_repeat 2 52 0 329 262 28 76 chr12 142329135 142329280 -1457175 - LTR67 LTR ERVL -76 481 344 225 287 11 64 chr12 142330011 142330079 -1456376 - LTR67 LTR ERVL -430 127 64 1698 217 64 21 chr12 142330079 142330563 -1455892 + MLT1D LTR MaLR 1 505 0 225 287 11 64 chr12 142330563 142330588 -1455867 - LTR67 LTR ERVL -493 64 39 2244 100 0 0 chr12 142330619 142330929 -1455526 + AluSg SINE Alu 1 310 0 781 156 0 22 chr12 142332202 142332337 -1454118 + FLAM_C SINE Alu 2 133 -10 436 183 12 0 chr12 142332494 142332576 -1453879 - MER105 DNA DNA -116 88 6 302 314 54 43 chr12 142332593 142332778 -1453677 + L1MC4a LINE L1 5695 5881 -1927 768 156 16 0 chr12 142332823 142332951 -1453504 + AluJo SINE Alu 7 136 -176 3053 189 63 12 chr12 142332960 142333615 -1452840 + L1MB8 LINE L1 5491 6178 0 1523 152 87 22 chr12 142333656 142333932 -1452523 - AluJo SINE Alu -13 299 6 238 194 129 0 chr12 142334147 142334209 -1452246 + L1MC5 LINE L1 7831 7900 -61 261 83 0 0 chr12 142335787 142335823 -1450632 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 268 319 11 0 chr12 142335833 142335927 -1450528 - L2 LINE L2 -35 3278 3184 1048 205 40 64 chr12 142335931 142336241 -1450214 + L1MB7 LINE L1 5771 6076 -108 623 255 94 47 chr12 142336389 142336707 -1449748 - MLT1H LTR MaLR -105 444 112 1631 179 14 63 chr12 142336714 142336739 -1449716 - L1MB8 LINE L1 0 6178 6153 2505 119 16 5 chr12 142336739 142337110 -1449345 - THE1C LTR MaLR 0 375 1 1631 179 14 63 chr12 142337110 142337498 -1448957 - L1MB8 LINE L1 -25 6153 5785 595 163 23 54 chr12 142337500 142337629 -1448826 - MLT1H LTR MaLR -421 128 4 558 280 42 12 chr12 142337689 142337857 -1448598 + MLT1L LTR MaLR 118 290 -325 932 189 69 131 chr12 142337988 142338121 -1448334 + MLT1B LTR MaLR 53 193 -197 1677 182 0 22 chr12 142338121 142338439 -1448016 + AluJb SINE Alu 1 311 -1 932 189 69 131 chr12 142338439 142338665 -1447790 + MLT1B LTR MaLR 193 390 0 1995 133 0 0 chr12 142338692 142338985 -1447470 + AluSx SINE Alu 1 293 -19 713 116 22 14 chr12 142338989 142339127 -1447328 + GA-rich Low_complexity Low_complexity 3 141 0 267 290 0 0 chr12 142339878 142340040 -1446415 + (CA)n Simple_repeat Simple_repeat 1 162 0 189 121 0 0 chr12 142340060 142340093 -1446362 + (CA)n Simple_repeat Simple_repeat 2 34 0 2525 219 61 7 chr12 142340625 142341197 -1445258 - L1MB5 LINE L1 0 6174 5572 1738 143 33 0 chr12 142341220 142341531 -1444924 - AluSx SINE Alu 0 320 1 210 177 73 21 chr12 142341581 142341677 -1444778 + (TTAA)n Simple_repeat Simple_repeat 2 102 0 190 203 102 34 chr12 142341958 142342017 -1444438 + MIR SINE MIR 85 147 -61 413 276 41 8 chr12 142342157 142342280 -1444175 + MLT1G1 LTR MaLR 61 187 -408 677 279 102 38 chr12 142343051 142343681 -1442774 + HAL1 LINE L1 1000 1669 -838 1640 157 0 51 chr12 142343723 142343861 -1442594 + AluJb SINE Alu 9 153 -159 1823 132 14 7 chr12 142343861 142344157 -1442298 + AluSx SINE Alu 1 298 -14 1640 157 0 51 chr12 142344157 142344330 -1442125 + AluJb SINE Alu 153 304 -8 1090 234 83 6 chr12 142345464 142345743 -1440712 - MLT1D LTR MaLR 0 505 219 278 188 0 0 chr12 142345871 142345919 -1440536 - MLT1D LTR MaLR -555 71 24 1764 168 3 19 chr12 142345920 142346268 -1440187 - AluSx SINE Alu 0 343 1 230 192 0 51 chr12 142346547 142346625 -1439830 + L1ME4a LINE L1 6045 6118 -3 278 249 144 116 chr12 142346976 142347149 -1439306 - MER5A DNA MER1_type 0 189 12 2395 118 19 25 chr12 142347412 142347778 -1438677 - THE1B LTR MaLR 0 364 1 1893 118 66 0 chr12 142347896 142348185 -1438270 + AluSx SINE Alu 5 312 0 2542 173 30 12 chr12 142348215 142348719 -1437736 + L1MB7 LINE L1 5619 6131 -53 2176 120 0 0 chr12 142348726 142349035 -1437420 + AluSx SINE Alu 1 309 -3 422 308 45 25 chr12 142349042 142349240 -1437215 + MIR SINE MIR 61 262 0 871 322 25 43 chr12 142350105 142350234 -1436221 + MER115 DNA AcHobo 1 131 -562 1822 165 17 67 chr12 142350234 142350640 -1435815 + MLT1B LTR MaLR 5 390 0 871 322 25 43 chr12 142350640 142350951 -1435504 + MER115 DNA AcHobo 131 433 -260 432 264 42 79 chr12 142350949 142351165 -1435290 + MER115 DNA AcHobo 366 573 -120 * 1406 211 107 66 chr12 142351225 142351681 -1434774 + MER66A LTR ERV1 97 476 -2 452 244 79 24 chr12 142351683 142351810 -1434645 + Zaphod DNA AcHobo 3896 4029 -2 721 233 84 20 chr12 142352063 142352384 -1434071 + MLT1G LTR MaLR 254 590 0 1944 124 0 28 chr12 142352461 142352783 -1433672 - AluSx SINE Alu 0 316 3 477 318 114 33 chr12 142353008 142353401 -1433054 - MLT1L LTR MaLR -41 574 150 2067 125 0 0 chr12 142353491 142353803 -1432652 - AluSx SINE Alu 0 312 1 191 281 53 0 chr12 142353840 142353897 -1432558 - L2 LINE L2 -213 3059 3000 1816 117 39 46 chr12 142354666 142354973 -1431482 - AluSq SINE Alu -8 305 1 883 208 128 75 chr12 142355361 142355719 -1430736 + MLT1D LTR MaLR 17 393 -112 601 241 1 8 chr12 142355719 142355853 -1430602 - MLT1C LTR MaLR 0 467 247 422 213 110 31 chr12 142356008 142356135 -1430320 + MIR SINE MIR 111 247 -15 184 278 65 46 chr12 142356165 142356273 -1430182 - L2 LINE L2 -21 3251 3142 2193 106 0 3 chr12 142356371 142356682 -1429773 + AluSx SINE Alu 1 310 -2 200 297 84 27 chr12 142356948 142357121 -1429334 + MIR SINE MIR 3 185 -63 1646 242 64 14 chr12 142357271 142357758 -1428697 + LTR53 LTR ERVL 6 516 -3 398 272 39 0 chr12 142357790 142357893 -1428562 + MIR SINE MIR 47 153 -109 753 193 0 0 chr12 142358051 142358170 -1428285 + FLAM_A SINE Alu 1 119 -14 520 339 18 5 chr12 142358233 142358451 -1428004 + MIR SINE MIR 12 232 -30 312 280 228 14 chr12 142358767 142358978 -1427477 + HAL1 LINE L1 1046 1301 -1206 215 133 22 0 chr12 142359001 142359046 -1427409 + GA-rich Low_complexity Low_complexity 2 47 0 1626 184 6 31 chr12 142360145 142360465 -1425990 - AluJb SINE Alu 0 312 1 696 186 81 0 chr12 142360465 142360589 -1425866 - AluJo SINE Alu -177 135 2 426 264 8 23 chr12 142360692 142360821 -1425634 - MLT1G LTR MaLR 0 590 464 627 277 94 4 chr12 142360874 142361109 -1425346 - MLT1G LTR MaLR -322 268 13 244 258 16 0 chr12 142361121 142361183 -1425272 + MLT1J2 LTR MaLR 54 116 -334 604 202 0 5 chr12 142361229 142361431 -1425024 - AluJb SINE Alu 0 317 22 535 307 128 63 chr12 142361432 142361891 -1424564 + L2 LINE L2 2824 3312 -1 1136 127 48 0 chr12 142362673 142362838 -1423617 + AluSq SINE Alu 1 173 -140 1546 101 113 23 chr12 142362938 142363195 -1423260 + AluSx SINE Alu 21 300 -12 1010 166 13 0 chr12 142363195 142363352 -1423103 + AluJo/FRAM SINE Alu 135 293 -19 1016 83 53 136 chr12 142363354 142363618 -1422837 + L1MA8 LINE L1 6032 6273 -18 1558 174 109 73 chr12 142363736 142364282 -1422173 + MLT1F1 LTR MaLR 1 565 -2 852 176 0 0 chr12 142364345 142364476 -1421979 - FLAM_C SINE Alu -1 132 2 1625 218 41 41 chr12 142364718 142365274 -1421181 - MER114 LTR ERV 0 648 93 2136 137 0 13 chr12 142365404 142365711 -1420744 - AluSx SINE Alu -7 305 3 2188 124 0 0 chr12 142365742 142366032 -1420423 - AluSx SINE Alu -22 290 1 545 290 143 18 chr12 142366394 142366666 -1419789 - L1M4 LINE L1 -964 5182 4877 2458 81 0 0 chr12 142366678 142366986 -1419469 - AluY SINE Alu -3 308 1 2198 121 0 10 chr12 142366991 142367288 -1419167 - AluSx SINE Alu -18 294 1 1903 164 16 0 chr12 142367329 142367634 -1418821 - AluSx SINE Alu -1 311 2 2154 133 0 3 chr12 142367638 142367947 -1418508 - AluSq SINE Alu -5 308 1 253 182 30 0 chr12 142367950 142368016 -1418439 - L1MA5 LINE L1 -2 6298 6231 * 605 138 0 0 chr12 142368014 142368108 -1418347 - L1MA5 LINE L1 -341 5959 5866 181 0 0 65 chr12 142368937 142368968 -1417487 + (AGCTG)n Simple_repeat Simple_repeat 1 29 0 888 110 8 0 chr12 142369695 142369822 -1416633 - AluSg/x SINE Alu -9 301 174 262 102 85 34 chr12 142369883 142369942 -1416513 - MLT1L LTR MaLR -24 591 530 2134 149 0 0 chr12 142370445 142370753 -1415702 + AluSx SINE Alu 1 308 -4 814 179 106 6 chr12 142370764 142370943 -1415512 + MER3 DNA MER1_type 13 209 0 332 260 119 45 chr12 142370797 142370974 -1415481 - MER3 DNA MER1_type 0 209 20 * 555 175 90 26 chr12 142371085 142371270 -1415185 - MLT1H LTR MaLR 0 612 420 266 253 160 37 chr12 142371284 142371447 -1415008 - MLT1H LTR MaLR -291 264 83 516 144 10 10 chr12 142371649 142371746 -1414709 - L1MB8 LINE L1 -9 6169 6073 384 192 48 72 chr12 142371750 142371875 -1414580 - L1MB8 LINE L1 -178 6000 5879 2198 108 10 3 chr12 142372183 142372480 -1413975 - AluSx SINE Alu -8 304 6 426 68 0 0 chr12 142372480 142372539 -1413916 + AluSp/q SINE Alu 243 301 -12 345 279 93 21 chr12 142372663 142372803 -1413652 - L1MC4 LINE L1 -1339 6703 6554 253 306 233 16 chr12 142372803 142373061 -1413394 - L2 LINE L2 0 3313 3000 180 182 114 0 chr12 142373122 142373166 -1413289 - L2 LINE L2 -7 3265 3217 1060 157 0 17 chr12 142373386 142373564 -1412891 - AluJb SINE Alu -1 311 137 2534 78 0 0 chr12 142373579 142373886 -1412569 - AluSc SINE Alu -2 307 1 389 319 123 39 chr12 142373943 142374253 -1412202 - L2 LINE L2 -32 3281 2946 722 188 104 35 chr12 142374277 142374479 -1411976 + MER20 DNA MER1_type 1 216 -3 1461 201 10 10 chr12 142374654 142374943 -1411512 + AluJb SINE Alu 9 297 -15 188 33 0 33 chr12 142375235 142375265 -1411190 + (CGG)n Simple_repeat Simple_repeat 3 31 0 22 35 0 0 chr12 142375274 142375303 -1411152 + GC_rich Low_complexity Low_complexity 1 29 0 257 261 23 11 chr12 142375736 142375824 -1410631 + C-rich Low_complexity Low_complexity 1 89 0 1735 150 43 17 chr12 142375991 142376291 -1410164 + AluJo SINE Alu 1 308 -4 1908 95 62 11 chr12 142376294 142376598 -1409857 + AluSx SINE Alu 2 319 0 187 235 20 0 chr12 142376662 142376713 -1409742 - L2 LINE L2 -341 2972 2921 770 274 54 67 chr12 142377139 142377214 -1409241 + MER58B DNA MER1_type 14 88 -2332 2389 107 0 0 chr12 142377214 142377523 -1408932 - AluSc SINE Alu 0 309 1 770 274 54 67 chr12 142377523 142377761 -1408694 + MER58B DNA MER1_type 88 323 -18 1335 169 184 0 chr12 142377931 142378285 -1408170 - MSTB1 LTR MaLR -13 419 1 554 197 64 140 chr12 142378351 142378615 -1407840 - MIR SINE MIR -10 252 9 296 283 91 0 chr12 142378766 142378865 -1407590 - MIR SINE MIR -119 143 36 271 342 89 0 chr12 142379090 142379248 -1407207 - MIR SINE MIR -70 192 21 280 262 75 9 chr12 142379566 142379673 -1406782 + L1MC4 LINE L1 7741 7854 -188 2241 107 3 0 chr12 142379717 142380007 -1406448 - AluSx SINE Alu -21 291 1 1776 169 88 5 chr12 142380122 142380506 -1405949 + L1MB7 LINE L1 5743 6158 -26 1555 183 28 7 chr12 142382290 142382580 -1403875 - AluJo SINE Alu -16 296 1 430 134 0 0 chr12 142383574 142383641 -1402814 + MLT1D LTR MaLR 439 505 0 2289 119 26 66 chr12 142383661 142384039 -1402416 - THE1B LTR MaLR 0 364 2 371 147 5 5 chr12 142384362 142384414 -1402041 + L1MA8 LINE L1 6081 6132 -171 2263 109 0 3 chr12 142384414 142384707 -1401748 + AluSx SINE Alu 1 292 -20 371 147 5 5 chr12 142384707 142384752 -1401703 + L1MA8 LINE L1 6131 6191 -112 3489 129 39 58 chr12 142384805 142384882 -1401573 - L1MA8 LINE L1 -25 6266 6189 866 165 0 0 chr12 142384882 142385015 -1401440 + FLAM_C SINE Alu 1 133 0 3489 129 39 58 chr12 142385015 142385105 -1401350 - L1MA8 LINE L1 -102 6189 6099 2158 134 3 0 chr12 142385105 142385404 -1401051 - AluSx SINE Alu -12 300 1 3489 129 39 58 chr12 142385404 142385927 -1400528 - L1MA8 LINE L1 -192 6099 5588 2501 84 0 0 chr12 142386318 142386627 -1399828 - AluSg SINE Alu -1 309 1 2079 134 0 3 chr12 142386932 142387230 -1399225 + AluSg SINE Alu 6 302 -8 1823 145 51 0 chr12 142388255 142388551 -1397904 + AluJb SINE Alu 1 311 -1 440 194 10 31 chr12 142388635 142388733 -1397722 + AluJ/FLAM SINE Alu 2 97 -215 335 307 59 70 chr12 142388755 142389025 -1397430 - Charlie8 DNA MER1_type -2142 275 9 188 294 20 0 chr12 142389102 142389153 -1397302 - MIR SINE MIR -48 214 163 227 284 95 0 chr12 142389166 142389240 -1397215 - L2 LINE L2 0 3313 3233 405 321 67 16 chr12 142389329 142389522 -1396933 + MLT1K LTR MaLR 142 344 -244 1951 131 35 3 chr12 142389876 142390166 -1396289 + AluSq SINE Alu 1 299 -14 186 172 0 0 chr12 142391463 142391492 -1394963 - L2 LINE L2 -17 3255 3227 451 265 27 63 chr12 142391534 142391757 -1394698 + MER46C DNA MER2_type 1 215 -123 2355 95 0 0 chr12 142391886 142392181 -1394274 - AluSg SINE Alu -15 295 1 374 312 35 35 chr12 142392345 142392515 -1393940 + MLT1I LTR MaLR 100 269 -140 371 265 20 10 chr12 142392658 142392756 -1393699 - MIR SINE MIR -110 152 54 1824 155 20 14 chr12 142392831 142393128 -1393327 - AluJo SINE Alu -13 299 1 753 280 122 14 chr12 142393889 142394224 -1392231 + MLT1J2 LTR MaLR 1 374 -72 182 283 23 104 chr12 142394428 142394601 -1391854 - L2 LINE L2 -9 3263 3105 4494 152 39 50 chr12 142394662 142395515 -1390940 - L1MA9 LINE L1 0 6312 5470 2014 146 21 32 chr12 142395515 142395892 -1390563 - THE1C LTR MaLR 0 375 3 4494 152 39 50 chr12 142395892 142395990 -1390465 - L1MA9 LINE L1 -842 5470 5372 321 254 12 152 chr12 142396505 142396601 -1389854 - L2 LINE L2 0 3313 3248 2150 124 0 3 chr12 142396601 142396900 -1389555 + AluSq SINE Alu 1 298 -15 321 254 12 152 chr12 142396900 142396968 -1389487 - L2 LINE L2 -65 3248 3172 410 230 14 0 chr12 142396972 142397483 -1388972 + (TG)n Simple_repeat Simple_repeat 1 518 0 484 228 8 0 chr12 142397495 142397981 -1388474 + (TG)n Simple_repeat Simple_repeat 1 490 0 2380 287 152 76 chr12 142397982 142400080 -1386375 - L2 LINE L2 -174 3139 811 1540 244 98 31 chr12 142400327 142400836 -1385619 + MER77 LTR ERV1 54 596 -9 1604 262 43 30 chr12 142400924 142401569 -1384886 + L1MC4a LINE L1 5332 5985 -1823 571 271 11 33 chr12 142401805 142401986 -1384469 + MLT1F1 LTR MaLR 2 178 -364 682 185 73 7 chr12 142402001 142402152 -1384303 + MLT1B LTR MaLR 11 171 -219 698 219 0 0 chr12 142402153 142402276 -1384179 + FLAM_C SINE Alu 1 123 -20 1828 170 0 29 chr12 142402294 142402605 -1383850 + AluJb SINE Alu 1 302 -10 845 210 6 7 chr12 142402614 142402810 -1383645 + MLT1B LTR MaLR 169 374 -11 1059 215 203 0 chr12 142402840 142403156 -1383299 + MLT1F1 LTR MaLR 188 567 0 1543 225 102 23 chr12 142403163 142403495 -1382960 - MLT1F LTR MaLR -24 518 137 185 0 40 0 chr12 142403495 142403520 -1382935 + (GA)n Simple_repeat Simple_repeat 2 27 0 1543 225 102 23 chr12 142403520 142403658 -1382797 - MLT1F LTR MaLR -405 137 11 929 286 78 27 chr12 142403759 142404240 -1382215 - LTR1B LTR ERV1 -332 494 33 1796 174 3 0 chr12 142404933 142405226 -1381229 - AluJo SINE Alu -18 294 1 2487 93 0 0 chr12 142408485 142408797 -1377658 - AluSx SINE Alu 0 312 1 570 241 91 37 chr12 142409525 142409758 -1376697 + L1ME1 LINE L1 5875 6115 -51 229 188 59 59 chr12 142409993 142410078 -1376377 - L1MA9 LINE L1 -22 6290 6206 412 327 70 0 chr12 142410113 142410312 -1376143 - L1MA9 LINE L1 -90 6222 6010 1384 196 18 33 chr12 142410317 142410444 -1376011 + L1MA9 LINE L1 5700 5827 -485 2364 88 3 3 chr12 142410444 142410741 -1375714 + AluSc SINE Alu 1 297 -12 1384 196 18 33 chr12 142410741 142410950 -1375505 + L1MA9 LINE L1 5827 6031 -281 595 280 37 33 chr12 142411241 142411284 -1375171 - MIR SINE MIR -5 257 216 1785 114 86 44 chr12 142411284 142411644 -1374811 + THE1C LTR MaLR 1 375 0 595 280 37 33 chr12 142411644 142411814 -1374641 - MIR SINE MIR -46 216 43 290 197 299 8 chr12 142412335 142412452 -1374003 - MLT1H LTR MaLR -74 475 325 357 82 0 0 chr12 142413214 142413263 -1373192 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1896 145 28 0 chr12 142413276 142413566 -1372889 - AluSx SINE Alu -14 298 1 1458 201 116 34 chr12 142413698 142413799 -1372656 + MLT1D LTR MaLR 1 92 -413 2325 156 49 10 chr12 142413799 142414210 -1372245 - MSTA LTR MaLR -1 427 1 1458 201 116 34 chr12 142414210 142414367 -1372088 + MLT1D LTR MaLR 92 235 -270 2325 163 46 2 chr12 142414367 142414777 -1371678 - MSTA LTR MaLR 0 428 1 1458 201 116 34 chr12 142414777 142414984 -1371471 + MLT1D LTR MaLR 235 505 0 551 272 156 0 chr12 142415067 142415247 -1371208 + MIR SINE MIR 25 232 -30 32 0 0 0 chr12 142415727 142415759 -1370696 + AT_rich Low_complexity Low_complexity 1 32 0 206 424 16 0 chr12 142416146 142416271 -1370184 + L2 LINE L2 2264 2390 -924 615 308 123 45 chr12 142416273 142416647 -1369808 - MLT1J LTR MaLR -9 502 100 216 226 0 59 chr12 142417143 142417332 -1369123 + (CCGCT)n Simple_repeat Simple_repeat 1 177 0 204 282 43 12 chr12 142417546 142417709 -1368746 + (CACTC)n Simple_repeat Simple_repeat 3 170 0 2267 99 10 16 chr12 142418139 142418443 -1368012 + AluSc SINE Alu 1 302 -7 497 291 74 62 chr12 142418583 142418969 -1367486 + L2 LINE L2 2713 3093 -220 2587 45 3 6 chr12 142418969 142419281 -1367174 - AluY SINE Alu 0 311 1 497 291 74 62 chr12 142419281 142419308 -1367147 + L2 LINE L2 3093 3118 -195 1824 156 10 20 chr12 142419308 142419610 -1366845 + AluJo SINE Alu 1 299 -13 497 291 74 62 chr12 142419610 142419796 -1366659 + L2 LINE L2 3118 3313 0 400 308 48 67 chr12 142421320 142421528 -1364927 - L1ME4a LINE L1 -27 6094 5891 380 223 29 34 chr12 142421451 142421570 -1364885 + L1MC4 LINE L1 1972 6983 -1339 * 311 257 27 0 chr12 142421505 142421579 -1364876 - L1MC3 LINE L1 -1139 6646 6571 * 624 257 111 67 chr12 142421992 142422096 -1364359 + MLT1C LTR MaLR 1 99 -368 2174 111 14 0 chr12 142422096 142422384 -1364071 - AluSx SINE Alu -20 292 1 624 257 111 67 chr12 142422384 142422695 -1363760 + MLT1C LTR MaLR 99 434 -33 1051 100 0 0 chr12 142422701 142422841 -1363614 - AluSp/q SINE Alu -3 310 171 442 262 74 43 chr12 142423022 142423278 -1363177 + LTR33 LTR ERVL 206 469 -52 398 304 109 38 chr12 142423468 142423761 -1362694 - MLT1J LTR MaLR -196 315 2 2059 139 44 27 chr12 142424367 142424734 -1361721 - THE1C LTR MaLR -2 373 1 261 266 98 35 chr12 142424882 142425055 -1361400 + LTR37B LTR ERV1 285 468 0 1743 174 91 5 chr12 142425220 142425593 -1360862 + MER74A LTR ERVL 119 523 -35 3903 110 5 53 chr12 142426423 142426950 -1359505 + MER41B LTR ERV1 2 553 -82 2361 77 3 26 chr12 142426950 142427262 -1359193 - AluSc SINE Alu -4 305 1 3903 110 5 53 chr12 142427262 142427293 -1359162 + MER41B LTR ERV1 553 584 -51 1966 127 117 0 chr12 142427293 142427600 -1358855 - MER61A LTR ERV1 0 343 1 3903 110 5 53 chr12 142427600 142427706 -1358749 + MER41B LTR ERV1 584 635 0 227 171 0 14 chr12 142427853 142427905 -1358550 + GA-rich Low_complexity Low_complexity 1 53 -16 2226 114 27 0 chr12 142427905 142428204 -1358251 + AluSx SINE Alu 1 307 -5 227 171 0 14 chr12 142428204 142428221 -1358234 + GA-rich Low_complexity Low_complexity 53 69 0 1329 231 74 41 chr12 142428453 142428813 -1357642 - MER92B LTR ERV1 0 636 251 2459 73 0 7 chr12 142428813 142429114 -1357341 - AluY SINE Alu -12 299 1 1329 231 74 41 chr12 142429114 142429291 -1357164 - MER92B LTR ERV1 -385 251 81 264 222 111 0 chr12 142429830 142429893 -1356562 + L2 LINE L2 3192 3261 -11 3061 123 44 6 chr12 142430188 142430666 -1355789 + MER1A DNA MER1_type 34 529 0 2256 97 7 0 chr12 142431304 142431593 -1354862 + AluSg SINE Alu 15 305 -5 204 209 75 15 chr12 142431649 142431716 -1354739 + L2 LINE L2 3243 3313 0 2061 153 0 10 chr12 142432200 142432513 -1353942 + AluSx SINE Alu 1 310 -2 1120 228 178 21 chr12 142432880 142433306 -1353149 + MLT1J LTR MaLR 11 503 -8 2146 138 7 0 chr12 142433671 142433975 -1352480 + AluSx SINE Alu 1 306 -6 261 0 0 0 chr12 142434036 142434065 -1352390 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1910 141 0 7 chr12 142434072 142434342 -1352113 - AluJo SINE Alu -31 281 14 329 263 136 0 chr12 142434522 142434640 -1351815 - MER5B DNA MER1_type 0 178 45 229 301 0 15 chr12 142434771 142434852 -1351603 + GA-rich Low_complexity Low_complexity 1 134 0 203 268 16 16 chr12 142435388 142435515 -1350940 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 278 250 23 23 chr12 142435524 142435612 -1350843 - L1MC4 LINE L1 -1339 6703 6616 222 233 0 0 chr12 142435615 142435658 -1350797 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 234 133 0 0 chr12 142435658 142435703 -1350752 + LTR66 LTR ERVL 398 442 -168 335 209 0 11 chr12 142435713 142435804 -1350651 + (TA)n Simple_repeat Simple_repeat 1 90 0 2058 136 7 7 chr12 142435805 142436113 -1350342 - AluSx SINE Alu -4 308 1 2085 190 43 54 chr12 142436249 142436382 -1350073 + L1PB4 LINE L1 5645 5778 -378 2205 96 4 0 chr12 142436382 142436662 -1349793 + AluSp SINE Alu 1 281 -32 2085 190 43 54 chr12 142436662 142437044 -1349411 + L1PB4 LINE L1 5778 6154 -2 2016 99 0 119 chr12 142437058 142437403 -1349052 + AluSx SINE Alu 1 304 -8 402 147 0 0 chr12 142439862 142439930 -1346525 + (CA)n Simple_repeat Simple_repeat 1 68 0 398 218 68 45 chr12 142440196 142440329 -1346126 + MIR SINE MIR 12 147 -115 611 309 38 8 chr12 142440648 142440884 -1345571 + MIR SINE MIR 17 259 -3 919 270 69 60 chr12 142441666 142442203 -1344252 + MLT1H LTR MaLR 7 548 -1 347 113 129 0 chr12 142442391 142442453 -1344002 + MLT1E LTR MaLR 78 147 -446 1432 199 18 0 chr12 142442541 142442827 -1343628 + MER47A DNA MER2_type 1 291 -75 1384 171 5 0 chr12 142442827 142443044 -1343411 - AluJb SINE Alu -9 303 86 270 237 17 0 chr12 142443052 142443111 -1343344 + MER47A DNA MER2_type 307 366 0 730 289 109 25 chr12 142443115 142443399 -1343056 + MLT1E3 LTR MaLR 316 623 -1 4032 99 13 0 chr12 142443451 142443998 -1342457 + MER41A LTR ERV1 1 554 0 2226 125 0 19 chr12 142444516 142444835 -1341620 + AluSq SINE Alu 1 313 0 423 286 35 35 chr12 142445008 142445207 -1341248 - Charlie8 DNA MER1_type -2218 199 1 2264 115 0 0 chr12 142445432 142445737 -1340718 - AluSx SINE Alu -7 305 1 310 269 43 64 chr12 142446189 142446330 -1340125 - MER5A DNA MER1_type -3 186 49 2223 116 0 3 chr12 142446849 142447159 -1339296 + AluSx SINE Alu 1 309 -3 317 298 149 6 chr12 142447593 142447761 -1338694 - MER113 DNA MER1_type? -97 424 233 498 261 69 30 chr12 142447805 142448008 -1338447 - MER46C DNA MER2_type -42 296 86 196 298 53 43 chr12 142448497 142448591 -1337864 - MIR SINE MIR -126 136 42 266 91 0 52 chr12 142448649 142448726 -1337729 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 96 26 35 chr12 142449109 142449421 -1337034 + AluSx SINE Alu 1 309 -3 1485 201 89 20 chr12 142449427 142449831 -1336624 + L1MA9 LINE L1 5879 6310 -2 487 283 167 6 chr12 142449834 142450014 -1336441 + MIR SINE MIR 50 258 -4 397 237 41 10 chr12 142450127 142450270 -1336185 + MLT1J1 LTR MaLR 61 206 -244 856 185 14 14 chr12 142450743 142451073 -1335382 + GA-rich Low_complexity Low_complexity 1 330 0 261 0 0 0 chr12 142454104 142454133 -1332322 + (TG)n Simple_repeat Simple_repeat 2 30 0 1654 146 0 20 chr12 142454312 142454566 -1331889 + AluSx SINE Alu 1 249 -63 2020 115 22 0 chr12 142454670 142454939 -1331516 - AluSq SINE Alu -37 276 2 314 267 26 17 chr12 142455642 142455758 -1330697 - MIR SINE MIR -14 248 132 640 256 6 6 chr12 142456412 142456580 -1329875 - L1ME1 LINE L1 -3 6163 5996 235 399 78 12 chr12 142456650 142456893 -1329562 - L3 LINE CR1 -139 1438 1180 833 137 0 38 chr12 142457027 142457158 -1329297 + AluJb SINE Alu 175 300 -12 337 318 38 77 chr12 142457448 142457696 -1328759 + MIR SINE MIR 19 261 -1 2346 75 16 0 chr12 142457728 142458034 -1328421 + AluY SINE Alu 1 311 0 322 250 192 0 chr12 142458773 142458893 -1327562 + L2 LINE L2 3163 3305 -8 238 291 189 16 chr12 142459210 142459337 -1327118 - MIR3 SINE MIR -14 194 46 251 266 195 18 chr12 142459404 142459517 -1326938 + MIR SINE MIR 13 145 -117 2386 84 7 0 chr12 142463143 142463441 -1323014 + AluSg SINE Alu 1 300 -10 627 60 48 0 chr12 142464155 142464238 -1322217 - AluY SINE Alu -7 304 218 303 311 57 80 chr12 142464591 142464616 -1321839 + L2 LINE L2 3107 3131 -182 1797 155 10 26 chr12 142464616 142464920 -1321535 + AluJo SINE Alu 1 299 -13 303 311 57 80 chr12 142464920 142465106 -1321349 + L2 LINE L2 3131 3313 0 399 295 62 62 chr12 142466629 142466822 -1319633 - L1ME4a LINE L1 -27 6094 5902 378 259 37 74 chr12 142466760 142466949 -1319506 + L1MC4 LINE L1 6609 6790 -1252 * 658 257 106 62 chr12 142467281 142467385 -1319070 + MLT1C LTR MaLR 1 99 -368 2174 111 14 0 chr12 142467385 142467673 -1318782 - AluSx SINE Alu -20 292 1 658 257 106 62 chr12 142467673 142467984 -1318471 + MLT1C LTR MaLR 99 434 -33 1051 100 0 0 chr12 142467990 142468130 -1318325 - AluSp/q SINE Alu -3 310 171 428 323 114 2 chr12 142468164 142468567 -1317888 + LTR33 LTR ERVL 22 469 -52 390 292 128 38 chr12 142468757 142469045 -1317410 - MLT1J LTR MaLR -196 315 2 2059 139 44 27 chr12 142469651 142470018 -1316437 - THE1C LTR MaLR -2 373 1 240 272 98 35 chr12 142470166 142470339 -1316116 + LTR37B LTR ERV1 285 468 0 1715 177 91 5 chr12 142470504 142470877 -1315578 + MER74A LTR ERVL 119 523 -35 3919 111 5 51 chr12 142471707 142472233 -1314222 + MER41B LTR ERV1 2 551 -84 2322 81 3 26 chr12 142472233 142472543 -1313912 - AluSc SINE Alu -6 303 1 3919 111 5 51 chr12 142472543 142472574 -1313881 + MER41B LTR ERV1 551 582 -53 1978 124 117 0 chr12 142472574 142472881 -1313574 - MER61A LTR ERV1 0 343 1 3919 111 5 51 chr12 142472881 142472987 -1313468 + MER41B LTR ERV1 582 635 0 191 182 0 15 chr12 142473134 142473182 -1313273 + GA-rich Low_complexity Low_complexity 1 49 -16 2181 125 26 0 chr12 142473182 142473485 -1312970 + AluSx SINE Alu 1 311 -1 191 182 0 15 chr12 142473485 142473502 -1312953 + GA-rich Low_complexity Low_complexity 49 65 0 1318 227 76 43 chr12 142473696 142474056 -1312399 - MER92B LTR ERV1 0 636 251 2404 83 0 7 chr12 142474056 142474356 -1312099 - AluY SINE Alu -13 298 1 1318 227 76 43 chr12 142474356 142474533 -1311922 - MER92B LTR ERV1 -385 251 81 237 238 111 0 chr12 142475072 142475135 -1311320 + L2 LINE L2 3192 3261 -11 3055 123 44 6 chr12 142475430 142475908 -1310547 + MER1A DNA MER1_type 34 529 0 2240 100 7 0 chr12 142476547 142476838 -1309617 + AluSg SINE Alu 15 307 -3 204 209 75 15 chr12 142476895 142476962 -1309493 + L2 LINE L2 3243 3313 0 2044 157 0 10 chr12 142477447 142477760 -1308695 + AluSx SINE Alu 1 310 -2 1121 225 176 21 chr12 142478127 142478554 -1307901 + MLT1J LTR MaLR 11 503 -8 2222 131 7 0 chr12 142478919 142479225 -1307230 + AluSx SINE Alu 1 308 -4 216 0 0 0 chr12 142479286 142479310 -1307145 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1895 144 0 7 chr12 142479317 142479587 -1306868 - AluJo SINE Alu -31 281 14 329 263 136 0 chr12 142479767 142479885 -1306570 - MER5B DNA MER1_type 0 178 45 229 301 0 15 chr12 142480016 142480097 -1306358 + GA-rich Low_complexity Low_complexity 1 134 0 314 330 37 18 chr12 142480661 142480770 -1305685 + L1MC4 LINE L1 6593 6703 -1339 278 250 23 23 chr12 142480770 142480858 -1305597 - L1MC4 LINE L1 -1339 6703 6616 222 233 0 0 chr12 142480861 142480904 -1305551 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 234 133 0 0 chr12 142480904 142480949 -1305506 + LTR66 LTR ERVL 398 442 -168 335 209 0 11 chr12 142480959 142481050 -1305405 + (TA)n Simple_repeat Simple_repeat 1 90 0 2058 136 7 7 chr12 142481051 142481359 -1305096 - AluSx SINE Alu -4 308 1 2085 190 43 54 chr12 142481496 142481629 -1304826 + L1PB4 LINE L1 5645 5778 -378 2205 96 4 0 chr12 142481629 142481909 -1304546 + AluSp SINE Alu 1 281 -32 2085 190 43 54 chr12 142481909 142482291 -1304164 + L1PB4 LINE L1 5778 6154 -2 2002 103 0 118 chr12 142482305 142482653 -1303802 + AluSx SINE Alu 1 307 -5 402 147 0 0 chr12 142485113 142485181 -1301274 + (CA)n Simple_repeat Simple_repeat 1 68 0 398 218 68 45 chr12 142485447 142485580 -1300875 + MIR SINE MIR 12 147 -115 611 309 38 8 chr12 142485899 142486135 -1300320 + MIR SINE MIR 17 259 -3 943 266 69 60 chr12 142486917 142487454 -1299001 + MLT1H LTR MaLR 7 548 -1 347 113 129 0 chr12 142487642 142487704 -1298751 + MLT1E LTR MaLR 78 147 -446 1448 196 18 0 chr12 142487792 142488078 -1298377 + MER47A DNA MER2_type 1 291 -75 1392 170 5 0 chr12 142488078 142488296 -1298159 - AluJb SINE Alu -8 304 86 270 237 17 0 chr12 142488304 142488363 -1298092 + MER47A DNA MER2_type 307 366 0 723 289 109 25 chr12 142488367 142488651 -1297804 + MLT1E3 LTR MaLR 316 623 -1 4016 101 13 0 chr12 142488703 142489250 -1297205 + MER41A LTR ERV1 1 554 0 2235 120 0 19 chr12 142489767 142490084 -1296371 + AluSq SINE Alu 1 311 -2 423 286 35 35 chr12 142490257 142490456 -1295999 - Charlie8 DNA MER1_type -2218 199 1 2239 118 0 0 chr12 142490681 142490986 -1295469 - AluSx SINE Alu -7 305 1 272 284 43 64 chr12 142491438 142491579 -1294876 - MER5A DNA MER1_type -3 186 49 2276 109 0 3 chr12 142492098 142492409 -1294046 + AluSx SINE Alu 1 310 -2 317 298 149 6 chr12 142492843 142493011 -1293444 - MER113 DNA MER1_type? -97 424 233 498 261 69 30 chr12 142493055 142493258 -1293197 - MER46C DNA MER2_type -42 296 86 196 298 53 43 chr12 142493747 142493841 -1292614 - MIR SINE MIR -126 136 42 284 89 0 51 chr12 142493899 142493978 -1292477 + (CA)n Simple_repeat Simple_repeat 1 75 0 2065 101 26 39 chr12 142494361 142494667 -1291788 + AluSx SINE Alu 1 302 -10 1485 201 89 20 chr12 142494673 142495077 -1291378 + L1MA9 LINE L1 5879 6310 -2 461 294 167 6 chr12 142495080 142495260 -1291195 + MIR SINE MIR 50 258 -4 397 237 41 10 chr12 142495373 142495516 -1290939 + MLT1J1 LTR MaLR 61 206 -244 856 167 16 20 chr12 142495958 142496331 -1290124 + GA-rich Low_complexity Low_complexity 1 371 0 387 195 13 20 chr12 142498313 142498462 -1287993 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 327 275 9 0 chr12 142498478 142498587 -1287868 + GA-rich Low_complexity Low_complexity 2 111 0 1918 137 32 3 chr12 142498882 142499167 -1287288 - AluSx SINE Alu -19 293 1 2464 76 3 0 chr12 142499261 142499564 -1286891 + AluY SINE Alu 1 304 -7 24 0 0 0 chr12 142500746 142500770 -1285685 + AT_rich Low_complexity Low_complexity 1 24 0 184 115 0 0 chr12 142500982 142501008 -1285447 - MIR SINE MIR -116 146 121 1601 176 6 71 chr12 142501643 142501966 -1284489 - AluJb SINE Alu -10 302 1 1640 230 80 23 chr12 142501972 142502480 -1283975 - MLT1E3 LTR MaLR -3 621 60 237 355 126 6 chr12 142502585 142502768 -1283687 + L2 LINE L2 2848 3052 -220 411 372 71 0 chr12 142502835 142503031 -1283424 + MIR SINE MIR 38 247 -15 1115 188 198 25 chr12 142503038 142503161 -1283294 + MLT1A2 LTR MaLR 1 101 -273 1682 157 31 11 chr12 142503161 142503448 -1283007 - AluJb SINE Alu -19 293 1 1115 188 198 25 chr12 142503448 142503643 -1282812 + MLT1A2 LTR MaLR 101 374 0 237 314 48 29 chr12 142503715 142503820 -1282635 + L2 LINE L2 3146 3252 -20 2195 116 10 0 chr12 142503897 142504191 -1282264 - AluSx SINE Alu -14 298 2 2140 103 7 7 chr12 142504557 142504848 -1281607 + AluSg SINE Alu 1 291 -19 1307 179 104 18 chr12 142505695 142505974 -1280481 + MLT2B2 LTR ERVL 4 306 -209 1417 164 31 0 chr12 142505977 142506233 -1280222 - L1MA4A LINE L1 -392 5911 5648 989 186 21 0 chr12 142506239 142506427 -1280028 + MLT2B2 LTR ERVL 323 514 -1 1736 147 20 37 chr12 142506782 142507081 -1279374 - AluSx SINE Alu -18 294 1 237 258 32 32 chr12 142508049 142508173 -1278282 + C-rich Low_complexity Low_complexity 2 125 0 1981 78 0 0 chr12 142508811 142509053 -1277402 - AluSg SINE Alu -68 242 1 454 310 88 43 chr12 142509072 142509401 -1277054 - L1M4 LINE L1 -3104 3042 2699 181 276 181 19 chr12 142509613 142509718 -1276737 + L2 LINE L2 3187 3308 -5 201 74 0 0 chr12 142512006 142512033 -1274422 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2327 88 0 3 chr12 142513367 142513661 -1272794 + AluSq SINE Alu 8 300 -13 2005 149 3 16 chr12 142517044 142517360 -1269095 - AluSq SINE Alu -1 312 1 184 228 0 152 chr12 142517934 142518013 -1268442 + L2 LINE L2 3246 3312 -1 2209 114 3 16 chr12 142518148 142518463 -1267992 - AluSq SINE Alu -2 311 1 283 0 29 0 chr12 142519089 142519124 -1267331 - MIR SINE MIR -116 146 111 2230 240 55 42 chr12 142522270 142523053 -1263402 + MER21B LTR ERV1 19 811 -52 1881 108 0 4 chr12 142524445 142524695 -1261760 + AluSx SINE Alu 54 302 -10 332 159 29 0 chr12 142524913 142524982 -1261473 - L2 LINE L2 -1284 2030 1960 2412 88 0 0 chr12 142525160 142525456 -1260999 - AluSx SINE Alu -16 296 1 2438 67 7 0 chr12 142525456 142525753 -1260702 - AluSp SINE Alu -14 299 1 1807 162 16 16 chr12 142525753 142526055 -1260400 - AluJb SINE Alu -9 303 1 981 89 0 0 chr12 142526060 142526183 -1260272 - AluSq/x SINE Alu -189 123 1 548 181 60 30 chr12 142526582 142526753 -1259702 + MLT1C LTR MaLR 1 189 -278 2256 121 0 0 chr12 142528001 142528306 -1258149 - AluSx SINE Alu -7 305 1 691 191 113 35 chr12 142528464 142528694 -1257761 - L1MA8 LINE L1 -8 6283 6036 1046 199 62 90 chr12 142528722 142529122 -1257333 + MLT1D LTR MaLR 5 393 -112 1022 235 59 22 chr12 142529122 142529446 -1257009 - MLT1A1 LTR MaLR 0 365 30 612 179 9 0 chr12 142529469 142529581 -1256874 + MLT1D LTR MaLR 390 502 -3 497 189 9 0 chr12 142529800 142529911 -1256544 - MER96B DNA MER1_type? -41 376 265 1963 129 0 50 chr12 142530445 142530762 -1255693 + AluSx SINE Alu 1 301 -11 986 166 0 0 chr12 142530762 142530919 -1255536 + AluSg/x SINE Alu 134 290 -22 647 332 142 13 chr12 142530991 142531371 -1255084 - L2 LINE L2 0 3313 2885 2408 110 0 0 chr12 142531454 142531764 -1254691 - AluSx SINE Alu 0 312 3 2026 70 8 0 chr12 142531775 142532019 -1254436 - AluSx SINE Alu -12 300 55 1051 217 136 57 chr12 142533172 142533486 -1252969 - MLT1C LTR MaLR -9 458 101 2450 81 7 0 chr12 142533486 142533796 -1252659 - AluSx SINE Alu 0 312 1 1051 217 136 57 chr12 142533796 142533901 -1252554 - MLT1C LTR MaLR -366 101 6 2223 142 0 3 chr12 142533959 142534270 -1252185 + AluSx SINE Alu 1 310 -2 1117 306 50 24 chr12 142534893 142535390 -1251065 - MLT1K LTR MaLR -21 567 58 1711 191 0 36 chr12 142535392 142535701 -1250754 - AluJo SINE Alu -14 298 1 2899 66 6 3 chr12 142535779 142536142 -1250313 + THE1B LTR MaLR 1 364 0 309 205 72 12 chr12 142536603 142536686 -1249769 - MLT1C LTR MaLR -1 466 379 283 359 31 8 chr12 142536693 142536821 -1249634 - MIR SINE MIR -112 150 20 400 229 217 0 chr12 142536867 142537024 -1249431 - L1MA9 LINE L1 -33 6279 6089 2333 106 7 0 chr12 142537024 142537326 -1249129 + AluSx SINE Alu 6 309 -3 860 158 79 0 chr12 142537393 142537557 -1248898 + L1MA4 LINE L1 6120 6296 -4 361 272 156 0 chr12 142537561 142537734 -1248721 + MER113 DNA MER1_type? 306 505 -16 228 198 22 11 chr12 142538139 142538230 -1248225 + (CA)n Simple_repeat Simple_repeat 2 93 0 800 74 0 0 chr12 142538266 142538361 -1248094 - AluSg/x SINE Alu -11 299 205 550 257 75 12 chr12 142538841 142539138 -1247317 + LOR1a LTR ERV1 115 487 -10 253 324 62 66 chr12 142539169 142539441 -1247014 - L2 LINE L2 0 3313 3043 367 171 27 90 chr12 142540958 142541069 -1245386 - L1PB4 LINE L1 -8 6148 6045 336 250 0 0 chr12 142541067 142541151 -1245304 + L1P5 LINE L1 5670 5753 -403 * 1067 218 69 69 chr12 142541930 142542334 -1244121 - MLT1D LTR MaLR -3 502 99 2011 208 21 0 chr12 142542336 142542763 -1243692 + L1MA9 LINE L1 5716 6151 -161 765 131 83 36 chr12 142542761 142542929 -1243526 + L1P5 LINE L1 5524 5699 -457 * 339 160 56 62 chr12 142542950 142543094 -1243361 + (TA)n Simple_repeat Simple_repeat 1 143 0 431 164 0 0 chr12 142543198 142543271 -1243184 - L1PA16 LINE L1 -325 5841 5769 * 4837 142 7 8 chr12 142543268 142544101 -1242354 - L1PA16 LINE L1 -1 6165 5334 351 0 0 0 chr12 142544305 142544344 -1242111 + (TG)n Simple_repeat Simple_repeat 2 40 0 444 343 95 13 chr12 142544427 142544815 -1241640 + LTR16A LTR ERVL 30 449 -1 363 276 163 36 chr12 142544825 142545021 -1241434 - L2 LINE L2 -51 3262 3042 516 265 102 0 chr12 142545179 142545326 -1241129 - MER5B DNA MER1_type -2 176 15 1967 145 0 3 chr12 142545615 142545924 -1240531 + AluSx SINE Alu 1 308 0 279 114 0 0 chr12 142546501 142546545 -1239910 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 559 120 33 0 chr12 142546747 142546839 -1239616 - L1MA9 LINE L1 -162 6150 6056 5798 118 16 9 chr12 142546955 142548147 -1238308 - L1PA15 LINE L1 -14 6151 4958 5919 205 29 19 chr12 142548149 142550125 -1236330 - L1PA13 LINE L1 -3260 3537 1532 1946 210 13 0 chr12 142550680 142551071 -1235384 - MER57A LTR ERV1 0 403 8 297 273 37 64 chr12 142551344 142551531 -1234924 + MLT1K LTR MaLR 123 304 -284 189 214 0 0 chr12 142552247 142552289 -1234166 + CT-rich Low_complexity Low_complexity 2 43 0 234 214 71 62 chr12 142552295 142552407 -1234048 - MLT1K LTR MaLR -156 432 320 3134 165 29 41 chr12 142552539 142553333 -1233122 - L1MC2 LINE L1 -398 5946 5176 253 320 74 16 chr12 142554449 142554571 -1231884 - L2 LINE L2 -453 2861 2733 1631 257 48 20 chr12 142554700 142555240 -1231215 + L1ME3A LINE L1 5614 6168 -2 188 108 0 27 chr12 142555280 142555317 -1231138 + (GAGAA)n Simple_repeat Simple_repeat 3 38 0 * 402 115 0 0 chr12 142555314 142555375 -1231080 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 867 164 76 0 chr12 142555385 142555556 -1230899 - MER20 DNA MER1_type -4 215 32 650 336 44 21 chr12 142556024 142556363 -1230092 + L2 LINE L2 2967 3313 0 925 202 162 24 chr12 142556397 142556694 -1229761 - LOR1b LTR ERV1 -9 452 115 828 230 5 68 chr12 142556935 142557087 -1229368 + MER3 DNA MER1_type 2 137 -72 2435 81 0 3 chr12 142557087 142557382 -1229073 - AluSp SINE Alu -19 294 1 828 230 5 68 chr12 142557382 142557451 -1229004 + MER3 DNA MER1_type 137 209 0 323 155 0 0 chr12 142557586 142557644 -1228811 - LTR67 LTR ERVL -16 541 484 2973 136 8 6 chr12 142557748 142558218 -1228237 + L1PA16 LINE L1 5695 6165 -1 1934 171 33 33 chr12 142558218 142558573 -1227882 + L1PA16 LINE L1 5769 6129 -37 1982 134 58 30 chr12 142558573 142558938 -1227517 + THE1C LTR MaLR 1 375 0 1934 171 33 33 chr12 142558938 142558977 -1227478 + L1PA16 LINE L1 6128 6166 0 528 241 9 0 chr12 142559111 142559219 -1227236 - MER81 DNA DNA -1 113 5 277 389 9 0 chr12 142561315 142561428 -1225027 + MER5C DNA MER1_type 1 114 -210 1426 156 63 56 chr12 142561429 142561698 -1224757 + AluJo SINE Alu 34 304 -8 252 184 0 0 chr12 142561735 142561784 -1224671 + MER5C DNA MER1_type 226 274 -50 1335 270 49 19 chr12 142562384 142562854 -1223601 + L1ME3 LINE L1 5655 6138 -24 2729 182 14 8 chr12 142563103 142563620 -1222835 - MLT2B1 LTR ERVL 0 520 1 2156 210 75 26 chr12 142563744 142564396 -1222059 - MER69 DNA AcHobo -2 2524 1841 730 273 34 0 chr12 142564393 142564602 -1221853 - MER69 DNA AcHobo -1772 754 539 * 300 330 97 0 chr12 142564638 142564741 -1221714 - L2 LINE L2 -6 3266 3154 317 297 91 6 chr12 142565241 142565406 -1221049 + L2 LINE L2 2421 2599 -715 955 192 39 156 chr12 142565521 142565802 -1220653 - MLT1D LTR MaLR -138 367 147 2272 108 0 3 chr12 142565802 142566125 -1220330 + AluSx SINE Alu 1 322 0 955 192 39 156 chr12 142566125 142566257 -1220198 - MLT1D LTR MaLR -358 147 1 1329 259 94 41 chr12 142566383 142566950 -1219505 - L1MD3 LINE L1 -33 7962 7174 315 369 0 21 chr12 142567377 142567518 -1218937 + L2 LINE L2 3134 3271 -1 1087 207 14 1 chr12 142567694 142567930 -1218525 - L1PB4 LINE L1 -281 5875 5632 395 171 27 90 chr12 142567896 142568007 -1218448 + L1PB4 LINE L1 6045 6148 -8 * 345 325 0 0 chr12 142569630 142569744 -1216711 + MIR SINE MIR 146 259 -3 4577 165 23 44 chr12 142569776 142570749 -1215706 - L1MC2 LINE L1 -198 6146 5199 541 277 42 0 chr12 142570857 142571023 -1215432 + MIR SINE MIR 70 242 -20 215 329 12 12 chr12 142571047 142571132 -1215323 - L2 LINE L2 -231 3041 2957 895 215 69 33 chr12 142571543 142571817 -1214638 + L1MA9 LINE L1 5971 6254 -58 1243 47 106 18 chr12 142571817 142571987 -1214468 - MER107 DNA MER1_type -12 185 1 325 146 0 0 chr12 142571988 142572043 -1214412 + L1MA9 LINE L1 6253 6307 -5 336 259 37 9 chr12 142572157 142572265 -1214190 - L2 LINE L2 -978 2336 2226 271 284 9 43 chr12 142572590 142572706 -1213749 - MER112 DNA MER1_type -86 174 63 252 277 0 0 chr12 142572747 142572812 -1213643 + (TA)n Simple_repeat Simple_repeat 1 65 0 255 173 96 0 chr12 142572812 142572864 -1213591 - MLT1G1 LTR MaLR -13 542 486 569 144 40 16 chr12 142572876 142573132 -1213323 + (TAGA)n Simple_repeat Simple_repeat 1 262 0 324 225 117 63 chr12 142573209 142573402 -1213053 - MLT1G1 LTR MaLR -173 413 193 990 180 161 0 chr12 142574140 142574357 -1212098 + MER21A LTR ERV1 13 264 -667 2691 169 85 14 chr12 142574373 142574865 -1211590 + MER21A LTR ERV1 399 925 -6 465 216 270 20 chr12 142574872 142575076 -1211379 + MLT1K LTR MaLR 193 447 -141 218 127 48 16 chr12 142575786 142575849 -1210606 + (TA)n Simple_repeat Simple_repeat 1 65 0 1764 127 0 28 chr12 142575868 142576159 -1210296 - L1PA16 LINE L1 -2 6164 5882 363 238 24 0 chr12 142576484 142576568 -1209887 + L2 LINE L2 3187 3272 0 1160 250 25 47 chr12 142576800 142576955 -1209500 + L1ME1 LINE L1 5707 5864 -302 2181 121 0 0 chr12 142576955 142577252 -1209203 - AluSq SINE Alu -14 299 3 1160 250 25 47 chr12 142577252 142577456 -1208999 + L1ME1 LINE L1 5864 6058 -108 670 203 114 0 chr12 142577459 142577567 -1208888 - L1MA9 LINE L1 -38 6274 6141 261 0 0 0 chr12 142577567 142577596 -1208859 + (TG)n Simple_repeat Simple_repeat 1 29 0 670 203 114 0 chr12 142577596 142577645 -1208810 - L1MA9 LINE L1 -171 6141 6099 1712 146 0 78 chr12 142577795 142578103 -1208352 + AluJb SINE Alu 1 284 -28 2151 122 0 10 chr12 142579081 142579375 -1207080 - AluSx SINE Alu -21 291 1 442 277 134 54 chr12 142579445 142579759 -1206696 + MER102b DNA MER1_type 1 339 -2 386 224 21 120 chr12 142579943 142580135 -1206320 - MLT1J LTR MaLR -110 401 229 472 306 77 6 chr12 142580309 142580492 -1205963 + MIR SINE MIR 41 236 -26 861 156 0 0 chr12 142580492 142580695 -1205760 + (ATGGTG)n Simple_repeat Simple_repeat 1 203 0 958 177 6 8 chr12 142580695 142581205 -1205250 + (ATG)n Simple_repeat Simple_repeat 1 509 0 1296 224 58 6 chr12 142581262 142581574 -1204881 + L1MC4a LINE L1 7329 7656 -152 448 181 0 32 chr12 142581578 142581672 -1204783 + L1MD3 LINE L1 7894 7984 -11 2166 194 30 22 chr12 142581756 142582219 -1204236 + MLT1C LTR MaLR 1 467 0 348 341 55 9 chr12 142583081 142583298 -1203157 + MIR SINE MIR 23 249 -13 838 302 160 23 chr12 142583540 142583595 -1202860 - MLT1K LTR MaLR -10 578 532 875 67 27 0 chr12 142583595 142583744 -1202711 + (CA)n Simple_repeat Simple_repeat 2 154 0 838 302 160 23 chr12 142583744 142584082 -1202373 - MLT1K LTR MaLR -56 532 131 362 275 117 0 chr12 142584219 142584339 -1202116 - LTR16B LTR ERVL -9 455 322 642 233 0 0 chr12 142584339 142584468 -1201987 - L1MB1 LINE L1 -318 5871 5743 849 169 38 0 chr12 142584475 142584635 -1201820 + L1MB1 LINE L1 5998 6163 -5 316 250 59 22 chr12 142584650 142584786 -1201669 - LTR16B LTR ERVL -131 333 193 725 94 39 0 chr12 142585618 142585746 -1200709 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 230 36 91 18 chr12 142585855 142585910 -1200545 + A-rich Low_complexity Low_complexity 2 60 0 186 43 0 0 chr12 142586057 142586080 -1200375 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 380 315 37 12 chr12 142587688 142587850 -1198605 - Charlie8 DNA MER1_type -2182 235 70 362 253 93 49 chr12 142588491 142588653 -1197802 + MLT1H1 LTR MaLR 385 553 -2 1243 258 9 9 chr12 142588666 142588984 -1197471 + MLT2D LTR ERVL 1 318 -96 2083 135 0 7 chr12 142589065 142589362 -1197093 - AluSx SINE Alu -17 295 1 215 288 17 0 chr12 142589440 142589499 -1196956 - L2 LINE L2 -30 3242 3183 183 311 0 0 chr12 142589716 142589777 -1196678 - L2 LINE L2 -302 2970 2910 371 307 106 66 chr12 142589823 142590325 -1196130 - L2 LINE L2 -467 2847 2326 480 299 192 25 chr12 142590331 142590974 -1195481 + L2 LINE L2 2535 3295 -18 243 0 0 0 chr12 142591204 142591231 -1195224 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2262 108 0 0 chr12 142591390 142591696 -1194759 - AluSx SINE Alu -6 306 1 189 94 0 0 chr12 142592091 142592123 -1194332 + (A)n Simple_repeat Simple_repeat 1 32 0 527 252 71 64 chr12 142592445 142592711 -1193744 - MLT1H LTR MaLR -269 280 13 25 0 0 0 chr12 142592872 142592897 -1193558 + AT_rich Low_complexity Low_complexity 1 25 0 5618 80 12 12 chr12 142592915 142593675 -1192780 + L1PA11 LINE L1 5409 6168 -6 1821 161 0 0 chr12 142593699 142593966 -1192489 - AluJo SINE Alu -45 267 1 366 222 48 92 chr12 142594002 142594209 -1192246 + L2 LINE L2 3103 3300 -13 1155 167 0 25 chr12 142595725 142595923 -1190532 - AluSp SINE Alu -22 291 99 181 289 108 0 chr12 142596000 142596083 -1190372 - MIR SINE MIR -125 137 46 6518 87 6 1 chr12 142596132 142597341 -1189114 + L1PA8A LINE L1 4917 6131 0 4944 144 1 1 chr12 142597627 142598406 -1188049 + L1PA8A LINE L1 5353 6131 0 11564 151 39 10 chr12 142599255 142599630 -1186825 + Tigger1 DNA MER2_type 28 390 -2028 2372 91 7 0 chr12 142599630 142599927 -1186528 + AluSp SINE Alu 1 299 -14 11564 151 39 10 chr12 142599927 142601535 -1184920 + Tigger1 DNA MER2_type 390 2070 -348 10231 138 22 10 chr12 142601637 142603058 -1183397 + Tigger1 DNA MER2_type 779 2223 -195 1788 135 66 0 chr12 142603058 142603332 -1183123 - AluSx SINE Alu -20 292 1 10231 138 22 10 chr12 142603332 142603531 -1182924 + Tigger1 DNA MER2_type 2223 2418 0 225 238 57 48 chr12 142604281 142604386 -1182069 - MLT1L LTR MaLR 0 615 510 234 216 0 0 chr12 142604466 142604517 -1181938 - MLT1L LTR MaLR -224 391 341 831 251 0 16 chr12 142604614 142604801 -1181654 + MER5A DNA MER1_type 1 184 -5 234 326 62 16 chr12 142604874 142605003 -1181452 + MIR SINE MIR 19 153 -55 813 241 38 14 chr12 142605032 142605244 -1181211 + MER20B DNA MER1_type 1 217 -2 1467 205 42 3 chr12 142605287 142605619 -1180836 + L1MB7 LINE L1 5840 6184 0 23 0 0 0 chr12 142606131 142606154 -1180301 + AT_rich Low_complexity Low_complexity 1 23 0 650 250 72 14 chr12 142606995 142607203 -1179252 - MLT1C LTR MaLR -8 459 240 580 285 59 36 chr12 142608187 142608492 -1177963 - LTR16B LTR ERVL -35 429 118 2668 88 3 0 chr12 142608594 142608948 -1177507 - THE1A LTR MaLR 0 355 1 834 240 9 27 chr12 142608964 142609185 -1177270 - MIR SINE MIR -17 245 29 260 309 70 50 chr12 142609443 142609644 -1176811 + L1MC4 LINE L1 7836 8040 -2 364 322 0 0 chr12 142610347 142610434 -1176021 + MER20B DNA MER1_type 97 183 -600 1961 137 7 20 chr12 142610435 142610728 -1175727 + AluJb SINE Alu 1 289 -23 273 248 74 41 chr12 142610802 142610923 -1175532 + MER20B DNA MER1_type 302 426 -357 612 276 56 13 chr12 142610976 142611208 -1175247 + MER20B DNA MER1_type 542 783 0 391 194 58 39 chr12 142611310 142611413 -1175042 - L2 LINE L2 0 3313 3209 482 298 75 56 chr12 142611416 142611775 -1174680 - MLT1I LTR MaLR -3 406 41 180 0 0 0 chr12 142611978 142611998 -1174457 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 7514 23 1 0 chr12 142611998 142612860 -1173595 - L1PA3 LINE L1 0 6155 5293 9095 30 0 0 chr12 142612871 142614710 -1171745 - L1PA3 LINE L1 0 6155 4317 585 140 19 28 chr12 142614746 142614853 -1171602 + AluY SINE Alu 2 107 -204 1271 238 183 23 chr12 142614856 142615385 -1171070 - LTR50 LTR ERVL -167 628 15 542 219 17 11 chr12 142615868 142616046 -1170409 + (TG)n Simple_repeat Simple_repeat 2 180 0 216 282 0 0 chr12 142616057 142616135 -1170320 + (TG)n Simple_repeat Simple_repeat 1 78 0 215 266 18 83 chr12 142616764 142616873 -1169582 + MIR SINE MIR 38 139 -123 487 228 94 8 chr12 142617023 142617150 -1169305 - MER63A DNA MER1_type -13 197 60 200 250 0 19 chr12 142617768 142617820 -1168635 - L2 LINE L2 -1 3312 3262 2039 113 13 10 chr12 142618090 142618400 -1168055 + AluSx SINE Alu 1 311 -1 1754 25 0 0 chr12 142618408 142618611 -1167844 + AluYa5 SINE Alu 106 308 -3 239 270 68 61 chr12 142618865 142619028 -1167427 - MLT1G1 LTR MaLR -289 306 143 2092 224 79 33 chr12 142619029 142619640 -1166815 - LTR48B LTR ERV1 -5 639 1 564 230 34 20 chr12 142619640 142619788 -1166667 - MLT1G1 LTR MaLR -445 150 1 339 291 9 27 chr12 142619792 142619902 -1166553 + MIR SINE MIR 104 211 -51 836 282 0 27 chr12 142620063 142620325 -1166130 - L1M4 LINE L1 -1195 4951 4697 704 269 0 5 chr12 142620338 142620531 -1165924 + L1M4 LINE L1 4978 5169 -977 817 249 40 49 chr12 142620572 142621001 -1165454 + MER34B LTR ERV1 4 479 -86 1054 201 9 0 chr12 142621130 142621344 -1165111 + MER20 DNA MER1_type 4 219 0 288 304 104 22 chr12 142621857 142622087 -1164368 + LTR16A LTR ERVL 150 398 -52 696 306 5 5 chr12 142622150 142622356 -1164099 + MIR SINE MIR 29 234 -28 998 180 26 99 chr12 142622531 142622776 -1163679 - MLT1B LTR MaLR -6 384 170 2006 112 10 20 chr12 142622776 142623080 -1163375 + AluSx SINE Alu 1 301 -11 998 180 26 99 chr12 142623080 142623179 -1163276 - MLT1B LTR MaLR -220 170 65 10096 28 3 0 chr12 142623236 142625181 -1161274 - L1PA4 LINE L1 -3 6152 4204 408 243 114 43 chr12 142625552 142625692 -1160763 + MIR SINE MIR 113 262 0 1711 75 8 13 chr12 142625722 142625961 -1160494 - AluSq SINE Alu -20 293 56 795 260 146 27 chr12 142627303 142627707 -1158748 - Charlie8 DNA MER1_type -1881 536 85 1878 121 11 11 chr12 142627732 142628043 -1158412 - AluSx SINE Alu 0 311 1 346 291 82 41 chr12 142628563 142628759 -1157696 + MIR SINE MIR 44 247 -15 21 36 0 0 chr12 142630027 142630055 -1156400 + AT_rich Low_complexity Low_complexity 1 28 0 432 161 25 0 chr12 142630777 142630858 -1155597 + LTR67 LTR ERVL 475 557 0 2381 74 117 6 chr12 142631497 142631823 -1154632 - THE1B LTR MaLR -2 362 1 1791 182 14 23 chr12 142632306 142632657 -1153798 + MER7A DNA MER2_type 1 346 0 1430 105 8 15 chr12 142633557 142633781 -1152674 - L1PA12 LINE L1 -204 5964 5750 180 0 0 0 chr12 142633916 142633936 -1152519 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1299 238 70 29 chr12 142634210 142634626 -1151829 - MLT1C LTR MaLR 0 467 35 860 272 17 22 chr12 142634670 142634867 -1151588 - MIR SINE MIR -20 242 45 2169 122 27 41 chr12 142634867 142635236 -1151219 + THE1B LTR MaLR 1 364 0 860 272 17 22 chr12 142635236 142635270 -1151185 - MIR SINE MIR -217 45 12 5410 110 13 28 chr12 142635436 142636283 -1150172 - L1PA13 LINE L1 -2 6161 5328 367 321 149 24 chr12 142636726 142636975 -1149480 + LTR16C LTR ERVL 1 280 -211 1454 167 136 45 chr12 142637045 142637402 -1149053 + MSTB1 LTR MaLR 1 400 -32 1563 172 3 18 chr12 142637402 142637721 -1148734 - AluJb SINE Alu 0 315 1 1454 167 136 45 chr12 142637721 142637758 -1148697 + MSTB1 LTR MaLR 400 432 0 691 238 65 11 chr12 142637797 142637982 -1148473 + LTR16C LTR ERVL 297 491 0 302 109 0 0 chr12 142638989 142639035 -1147420 - MADE1 DNA Mariner 0 80 35 301 265 159 29 chr12 142640170 142640340 -1146115 - L2 LINE L2 0 3313 3122 839 276 53 9 chr12 142640790 142641015 -1145440 + MIR SINE MIR 24 258 -4 252 333 97 0 chr12 142642390 142642483 -1143972 - L2 LINE L2 -7 3306 3205 515 311 117 15 chr12 142642554 142642879 -1143576 + L2 LINE L2 2378 2735 -579 561 273 19 0 chr12 142642887 142643048 -1143407 + L1MA4 LINE L1 6020 6183 -117 237 254 15 15 chr12 142643232 142643299 -1143156 + CT-rich Low_complexity Low_complexity 1 67 0 2636 99 8 3 chr12 142645113 142645475 -1140980 + THE1B LTR MaLR 1 364 0 1837 151 27 0 chr12 142645644 142645942 -1140513 + AluJb SINE Alu 1 306 -6 275 296 194 0 chr12 142645989 142646087 -1140368 - MIR SINE MIR -10 252 136 4260 179 49 39 chr12 142646113 142647590 -1138865 - L1MA7 LINE L1 0 6291 4801 288 329 0 0 chr12 142647595 142647680 -1138775 - MIR SINE MIR -103 159 75 288 224 17 0 chr12 142647769 142647827 -1138628 + MER58 DNA MER1_type 199 257 -2163 * 988 256 10 0 chr12 142647825 142648032 -1138423 + MER58B DNA MER1_type 133 341 0 284 295 18 45 chr12 142648635 142648747 -1137708 - MER102b DNA MER1_type 0 341 233 283 311 7 86 chr12 142648794 142648900 -1137555 + MIR SINE MIR 5 97 -165 2126 123 0 0 chr12 142648900 142649200 -1137255 - AluSx SINE Alu -12 300 1 283 311 7 86 chr12 142649200 142649244 -1137211 + MIR SINE MIR 97 143 -119 746 272 168 23 chr12 142649503 142650111 -1136344 + L2 LINE L2 2636 3311 -2 1748 125 10 20 chr12 142650413 142650708 -1135747 - L1PA14 LINE L1 -1 6160 5869 335 270 11 45 chr12 142651254 142651343 -1135112 + L2 LINE L2 3186 3271 -1 2322 52 41 0 chr12 142651866 142652156 -1134299 - AluY SINE Alu -9 302 1 417 202 126 8 chr12 142653120 142653239 -1133216 - L2 LINE L2 -8 3305 3173 299 65 22 0 chr12 142653250 142653296 -1133159 + (TG)n Simple_repeat Simple_repeat 1 47 0 306 0 0 0 chr12 142653718 142653752 -1132703 + (TG)n Simple_repeat Simple_repeat 2 35 0 204 170 57 19 chr12 142653784 142653837 -1132618 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 190 339 55 9 chr12 142653837 142653946 -1132509 - L2 LINE L2 -269 3044 2931 1164 185 38 8 chr12 142654210 142654448 -1132007 - MLT1D LTR MaLR 0 505 261 323 348 44 64 chr12 142654541 142654837 -1131618 + L1MDb LINE L1 392 681 -5728 694 221 35 69 chr12 142654986 142655276 -1131179 - MLT1D LTR MaLR -225 280 1 603 102 0 0 chr12 142656234 142656322 -1130133 + (TC)n Simple_repeat Simple_repeat 1 88 0 193 29 59 0 chr12 142656329 142656363 -1130092 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 254 248 76 29 chr12 142656550 142656655 -1129800 - MLT1H LTR MaLR -1 548 439 624 288 102 26 chr12 142656761 142657025 -1129430 - MLT1H LTR MaLR -264 285 2 697 228 74 42 chr12 142657689 142657878 -1128577 - MLT1J2 LTR MaLR 0 450 256 285 197 0 16 chr12 142657925 142657986 -1128469 - MLT1J1 LTR MaLR -356 90 31 677 198 256 6 chr12 142658291 142658463 -1127992 - MIR SINE MIR -20 242 28 1941 141 13 0 chr12 142659145 142659444 -1127011 - AluSx SINE Alu -8 304 2 391 296 74 0 chr12 142659494 142659602 -1126853 - L1MC4 LINE L1 -1313 6729 6614 313 260 27 0 chr12 142659607 142659680 -1126775 + L1MC4 LINE L1 6659 6733 -1309 346 264 81 29 chr12 142659784 142659958 -1126497 + Charlie8 DNA MER1_type 63 245 -2172 297 261 22 11 chr12 142659961 142660053 -1126402 + Charlie8 DNA MER1_type 170 262 -2155 302 200 50 0 chr12 142660127 142660187 -1126268 + Charlie8 DNA MER1_type 2355 2417 0 525 315 14 35 chr12 142660190 142660426 -1126029 + MIR SINE MIR 34 262 0 2168 216 118 20 chr12 142660959 142661459 -1124996 - L1ME2 LINE L1 -15 6149 5569 2094 122 42 48 chr12 142661459 142661836 -1124619 + THE1C LTR MaLR 1 375 0 2168 216 118 20 chr12 142661836 142661987 -1124468 - L1ME2 LINE L1 -595 5569 5434 825 270 68 34 chr12 142662580 142662962 -1123493 - LTR33 LTR ERVL -116 405 11 2086 176 84 0 chr12 142663437 142663830 -1122625 - MSTB LTR MaLR 0 426 1 1860 173 33 46 chr12 142663878 142664272 -1122183 - MLT1B LTR MaLR 0 390 2 21 0 0 0 chr12 142665226 142665247 -1121208 + AT_rich Low_complexity Low_complexity 1 21 0 985 290 147 11 chr12 142665630 142666072 -1120383 - MLT1K LTR MaLR -9 579 78 568 330 126 60 chr12 142666296 142666541 -1119914 + L2 LINE L2 1315 1542 -1772 2048 141 6 13 chr12 142666541 142666853 -1119602 - AluSx SINE Alu -2 310 1 568 330 126 60 chr12 142666853 142667219 -1119236 + L2 LINE L2 1542 1882 -1432 1954 148 58 17 chr12 142667219 142667578 -1118877 + THE1C LTR MaLR 1 374 -1 568 330 126 60 chr12 142667578 142668304 -1118151 + L2 LINE L2 1882 2741 -573 985 201 14 3 chr12 142668966 142669184 -1117271 + MSTD LTR MaLR 1 236 -217 283 183 52 5 chr12 142669320 142669404 -1117051 + MSTD LTR MaLR 133 179 -217 227 204 0 0 chr12 142669475 142669519 -1116936 + MSTD LTR MaLR 136 179 -217 242 220 85 0 chr12 142669649 142669708 -1116747 + MSTD LTR MaLR 115 178 -218 241 229 0 16 chr12 142669869 142669930 -1116525 + MSTD LTR MaLR 177 236 -221 232 173 0 19 chr12 142670412 142670464 -1115991 + MSTD LTR MaLR 130 180 -216 1048 228 11 41 chr12 142670562 142670830 -1115625 + MSTD LTR MaLR 137 396 0 22 35 0 0 chr12 142671579 142671608 -1114847 + AT_rich Low_complexity Low_complexity 1 29 0 683 241 181 27 chr12 142673216 142673581 -1112874 - LTR33A LTR ERVL -97 426 6 2062 79 11 29 chr12 142674168 142674447 -1112008 + AluSc SINE Alu 23 296 -13 606 259 21 36 chr12 142675664 142675857 -1110598 + MIR SINE MIR 16 205 -57 2986 68 11 0 chr12 142676930 142677310 -1109145 - L1PA8 LINE L1 -5 6167 5784 1976 190 98 21 chr12 142677610 142678079 -1108376 - MLT1D LTR MaLR 0 505 1 256 338 78 36 chr12 142678092 142678311 -1108144 - L2 LINE L2 -1 3271 3044 483 293 44 30 chr12 142678395 142678665 -1107790 + L1MC4 LINE L1 7171 7444 -598 567 179 89 42 chr12 142679059 142679227 -1107228 + L1PB4 LINE L1 5524 5699 -457 345 202 35 46 chr12 142679249 142679422 -1107033 + (TA)n Simple_repeat Simple_repeat 1 171 0 2039 187 0 3 chr12 142679425 142679794 -1106661 + L1PB4 LINE L1 5782 6149 -7 442 214 52 61 chr12 142679800 142679816 -1106639 + L1MA9 LINE L1 6140 6155 -157 270 0 0 0 chr12 142679816 142679846 -1106609 + (CA)n Simple_repeat Simple_repeat 2 31 0 442 214 52 61 chr12 142679846 142679998 -1106457 + L1MA9 LINE L1 6155 6309 -3 405 226 113 0 chr12 142680004 142680110 -1106345 - MLT1D LTR MaLR -387 118 1 482 279 64 6 chr12 142680270 142680442 -1106013 + MIR SINE MIR 12 193 -69 424 276 92 66 chr12 142680448 142680676 -1105779 - LTR16C LTR ERVL -7 484 251 332 284 94 47 chr12 142680756 142681118 -1105337 - LTR16A1 LTR ERVL -49 408 30 563 321 111 3 chr12 142681598 142681922 -1104533 - MLT1K LTR MaLR -101 487 129 1140 267 85 52 chr12 142682980 142683023 -1103432 - MLT1E LTR MaLR -27 566 526 1815 163 20 3 chr12 142683023 142683317 -1103138 + AluJo SINE Alu 1 299 -13 1140 267 85 52 chr12 142683317 142683812 -1102643 - MLT1E LTR MaLR -67 526 10 1777 187 0 3 chr12 142684450 142684739 -1101716 + AluSg SINE Alu 1 288 -22 533 173 82 0 chr12 142685257 142685367 -1101088 - L1PB4 LINE L1 -1 6155 6037 485 313 69 9 chr12 142685728 142685945 -1100510 - Charlie8 DNA MER1_type -2185 232 3 251 194 43 0 chr12 142688093 142688186 -1098269 + (TG)n Simple_repeat Simple_repeat 2 98 0 275 194 29 48 chr12 142688220 142688323 -1098132 + (TATG)n Simple_repeat Simple_repeat 2 102 0 277 215 35 12 chr12 142688327 142688499 -1097956 + (TG)n Simple_repeat Simple_repeat 1 176 0 186 43 0 0 chr12 142690109 142690132 -1096323 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 233 270 52 0 chr12 142693791 142693906 -1092549 + (TCTCTG)n Simple_repeat Simple_repeat 6 126 0 298 255 42 80 chr12 142694847 142695025 -1091430 - L2 LINE L2 -2 3311 3141 2006 136 0 28 chr12 142695025 142695342 -1091113 - AluJo SINE Alu -4 308 1 298 255 42 80 chr12 142695342 142695375 -1091080 - L2 LINE L2 -172 3141 3108 730 277 153 23 chr12 142695396 142695912 -1090543 + Charlie8 DNA MER1_type 85 667 -1750 1955 159 78 28 chr12 142696113 142696366 -1090089 - MLT1C LTR MaLR -24 443 159 1900 154 3 7 chr12 142696366 142696664 -1089791 - AluJo SINE Alu -15 297 1 1955 159 78 28 chr12 142696664 142696832 -1089623 - MLT1C LTR MaLR -308 159 1 1675 243 40 9 chr12 142697500 142697948 -1088507 - MLT1C LTR MaLR 0 467 6 906 256 55 75 chr12 142699040 142699277 -1087178 + L2 LINE L2 2687 2927 -386 2411 96 3 0 chr12 142699277 142699589 -1086866 + AluSq SINE Alu 1 313 0 906 256 55 75 chr12 142699589 142699968 -1086487 + L2 LINE L2 2927 3310 -3 553 185 29 0 chr12 142699988 142700161 -1086294 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 213 127 73 0 chr12 142700172 142700227 -1086228 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 192 262 0 0 chr12 142703542 142703584 -1082871 - MIR SINE MIR -157 105 64 311 49 0 98 chr12 142703670 142703731 -1082724 - L1PA6 LINE L1 0 6154 6100 42653 39 1 4 chr12 142703995 142710165 -1076290 + L1PA4 LINE L1 3 6154 -1 514 223 39 0 chr12 142710712 142710842 -1075613 - MER20 DNA MER1_type -5 214 80 258 265 102 24 chr12 142710986 142711152 -1075303 - MLT1J LTR MaLR -332 179 1 388 266 16 24 chr12 142711256 142711516 -1074939 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 292 273 188 0 chr12 142711811 142711965 -1074490 + MIR SINE MIR 65 247 -15 445 276 0 64 chr12 142712056 142712212 -1074243 - MER5B DNA MER1_type -27 151 6 308 326 16 16 chr12 142712795 142712924 -1073531 + L1ME3 LINE L1 5640 5768 -2040 807 266 186 43 chr12 142713276 142713674 -1072781 + MLT1H LTR MaLR 95 549 0 341 289 0 10 chr12 142714157 142714261 -1072194 - Charlie8 DNA MER1_type -1900 517 415 334 290 9 9 chr12 142714426 142714533 -1071922 - Charlie8 DNA MER1_type -2220 197 91 983 209 33 70 chr12 142714621 142714879 -1071576 + L1ME3 LINE L1 5841 6086 -76 1843 166 3 0 chr12 142714879 142715175 -1071280 + AluJb SINE Alu 1 297 -15 983 209 33 70 chr12 142715175 142715246 -1071209 + L1ME3 LINE L1 6086 6158 -4 563 299 70 8 chr12 142715312 142715553 -1070902 - MIR SINE MIR -3 259 4 186 143 0 0 chr12 142716185 142716220 -1070235 + (A)n Simple_repeat Simple_repeat 1 35 0 1242 184 109 0 chr12 142716277 142716544 -1069911 + AluJb SINE Alu 14 309 -3 560 273 87 29 chr12 142717370 142717612 -1068843 + MIR SINE MIR 6 261 -1 289 267 95 43 chr12 142719716 142719832 -1066623 + LTR67 LTR ERVL 432 553 -4 637 344 48 3 chr12 142720417 142720711 -1065744 - MLT1K LTR MaLR -144 444 138 1755 160 13 16 chr12 142720890 142721197 -1065258 - AluJb SINE Alu -6 306 1 1057 136 7 0 chr12 142721952 142722107 -1064348 + MLT2A2 LTR ERVL 213 368 -85 383 258 11 11 chr12 142722106 142722199 -1064256 - MSTD LTR MaLR -91 305 213 * 504 161 0 0 chr12 142722234 142722315 -1064140 + L1M2 LINE L1 5706 5786 -505 45214 36 3 1 chr12 142722351 142728489 -1057966 + L1PA4 LINE L1 4 6152 -3 183 80 0 0 chr12 142728492 142728517 -1057938 + (A)n Simple_repeat Simple_repeat 1 25 0 958 199 109 115 chr12 142728810 142729101 -1057354 - MLT1C LTR MaLR -2 465 177 1987 100 9 67 chr12 142729101 142729430 -1057025 - AluSx SINE Alu -2 310 1 958 199 109 115 chr12 142729430 142729606 -1056849 - MLT1C LTR MaLR -290 177 1 2171 8 0 0 chr12 142729944 142730186 -1056269 - AluYa5 SINE Alu -10 301 60 1650 145 14 40 chr12 142730299 142730595 -1055860 - AluSx SINE Alu -15 297 10 366 311 106 6 chr12 142730628 142730789 -1055666 - MIR SINE MIR -1 261 85 199 409 9 0 chr12 142731130 142731240 -1055215 - MIR SINE MIR -65 143 33 935 271 84 81 chr12 142732153 142732555 -1053900 + L1MC4 LINE L1 6907 7313 -729 2039 151 5 69 chr12 142732555 142732876 -1053579 + MER47A DNA MER2_type 1 294 -2029 1746 68 0 0 chr12 142732876 142733097 -1053358 - AluY SINE Alu -2 309 89 2039 151 5 69 chr12 142733097 142733166 -1053289 + MER47A DNA MER2_type 294 366 0 935 271 84 81 chr12 142733166 142733526 -1052929 + L1MC4 LINE L1 7313 7671 -371 272 305 22 6 chr12 142733738 142733885 -1052570 + L1MD3 LINE L1 7892 8040 -2 402 327 25 31 chr12 142733907 142734069 -1052386 + MIR SINE MIR 31 191 -71 1447 187 0 14 chr12 142734111 142734389 -1052066 - AluJo SINE Alu -32 280 7 2300 70 6 29 chr12 142734635 142734951 -1051504 + AluY SINE Alu 3 311 0 2193 106 0 0 chr12 142735017 142735319 -1051136 + AluSx SINE Alu 1 302 -10 880 225 10 15 chr12 142735343 142735586 -1050869 + L1M4 LINE L1 4935 5166 -980 763 207 0 0 chr12 142735591 142735726 -1050729 + FLAM_C SINE Alu 6 140 -3 1109 170 24 36 chr12 142735727 142735980 -1050475 + L1M4 LINE L1 5152 5401 -745 1984 123 7 10 chr12 142735981 142736289 -1050166 + AluSx SINE Alu 1 307 -5 1970 109 0 32 chr12 142736289 142736599 -1049856 + AluSp SINE Alu 1 301 -12 1748 219 18 13 chr12 142736599 142736988 -1049467 + MER39B LTR ERV1 262 652 -1 262 271 104 0 chr12 142737203 142737299 -1049156 + L2 LINE L2 3203 3308 -5 1583 158 46 14 chr12 142737311 142737596 -1048859 - AluJb SINE Alu -17 295 2 2176 120 0 0 chr12 142737623 142737924 -1048531 - AluSx SINE Alu -11 301 1 550 281 18 35 chr12 142738601 142738829 -1047626 - MER58A DNA MER1_type 0 224 1 2268 76 0 0 chr12 142739498 142739787 -1046668 - AluSx SINE Alu -18 294 6 494 247 121 0 chr12 142740385 142740551 -1045904 - MER20 DNA MER1_type -18 201 16 5094 102 21 39 chr12 142740764 142741284 -1045171 - MER4E LTR ERV1 0 779 276 2083 112 3 0 chr12 142741284 142741580 -1044875 - AluSx SINE Alu -14 298 2 5094 102 21 39 chr12 142741580 142741852 -1044603 - MER4E LTR ERV1 -503 276 1 290 264 136 18 chr12 142741852 142741962 -1044493 - MIR SINE MIR -29 233 111 1141 137 14 5 chr12 142742980 142743191 -1043264 - AluSg/x SINE Alu -3 306 94 417 279 202 0 chr12 142743267 142743525 -1042930 + L2 LINE L2 2810 3119 -194 3950 95 12 20 chr12 142743530 142743919 -1042536 + MER41A LTR ERV1 1 386 -168 2046 118 7 0 chr12 142743919 142744224 -1042231 + AluSq SINE Alu 1 307 -6 3950 95 12 20 chr12 142744224 142744392 -1042063 + MER41A LTR ERV1 386 554 0 1573 136 28 24 chr12 142744393 142744680 -1041775 - AluJb SINE Alu -14 298 11 821 98 0 63 chr12 142744717 142744860 -1041595 - AluSg/x SINE Alu -2 310 177 2186 89 3 0 chr12 142745173 142745465 -1040990 + AluSx SINE Alu 1 293 -19 396 0 0 0 chr12 142745531 142745575 -1040880 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 31 0 0 chr12 142745695 142745727 -1040728 + GC_rich Low_complexity Low_complexity 1 32 0 28 61 0 0 chr12 142746239 142746288 -1040167 + GC_rich Low_complexity Low_complexity 1 49 0 204 157 0 39 chr12 142746381 142746432 -1040023 + (CCG)n Simple_repeat Simple_repeat 1 49 0 1757 162 3 0 chr12 142748101 142748391 -1038064 + AluSx SINE Alu 3 293 -19 431 313 74 23 chr12 142748617 142748697 -1037758 + Charlie8 DNA MER1_type 12 86 -255 1559 183 7 20 chr12 142748697 142748998 -1037457 - AluJo SINE Alu -15 297 1 431 313 74 23 chr12 142748998 142749134 -1037321 + Charlie8 DNA MER1_type 86 239 -102 716 257 94 94 chr12 142749212 142749667 -1036788 - MLT1J LTR MaLR -56 455 1 386 235 0 88 chr12 142749672 142749698 -1036757 + L1ME2 LINE L1 3861 3888 -2258 4237 85 5 2 chr12 142749698 142750250 -1036205 + MER41A LTR ERV1 1 554 0 386 235 0 88 chr12 142750250 142750359 -1036096 + L1ME2 LINE L1 3888 3984 -2162 247 125 0 36 chr12 142750360 142750416 -1036039 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 417 125 16 0 chr12 142750523 142750587 -1035868 - AluS SINE Alu -247 66 2 2060 109 10 3 chr12 142750913 142751217 -1035238 + AluSx SINE Alu 1 306 -6 2052 131 0 0 chr12 142751786 142752092 -1034363 - AluSx SINE Alu -6 306 1 507 217 46 171 chr12 142752345 142752539 -1033916 + L1MC4 LINE L1 7202 7346 -696 279 0 0 0 chr12 142752539 142752570 -1033885 + (CA)n Simple_repeat Simple_repeat 2 32 0 507 217 46 171 chr12 142752570 142752679 -1033776 + L1MC4 LINE L1 7346 7467 -575 518 218 39 120 chr12 142753133 142753367 -1033088 + MER112 DNA MER1_type 4 218 -42 2060 120 0 22 chr12 142754150 142754466 -1031989 - AluSq SINE Alu -2 311 3 546 67 0 0 chr12 142754714 142754789 -1031666 + (GA)n Simple_repeat Simple_repeat 2 76 0 207 100 0 0 chr12 142756233 142756263 -1030192 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 5987 69 19 9 chr12 142756263 142757049 -1029406 - L1PA10 LINE L1 -21 6147 5354 1404 134 0 9 chr12 142757155 142757378 -1029077 + AluSx SINE Alu 1 221 -91 2954 243 58 22 chr12 142757391 142758878 -1027577 + L1ME2 LINE L1 4617 6164 0 396 260 34 90 chr12 142758969 142759070 -1027385 + L1ME4a LINE L1 5955 6043 -78 2056 119 7 0 chr12 142759070 142759365 -1027090 + AluSx SINE Alu 1 297 -15 396 260 34 90 chr12 142759365 142759440 -1027015 + L1ME4a LINE L1 6043 6121 0 2078 99 0 0 chr12 142759879 142760195 -1026260 - AluSx SINE Alu 0 316 1 238 256 142 40 chr12 142760792 142760968 -1025487 - MIR SINE MIR -49 213 20 2020 117 0 3 chr12 142761212 142761512 -1024943 + AluSx SINE Alu 1 299 -13 1386 149 0 28 chr12 142761821 142762069 -1024386 + AluJb SINE Alu 59 299 -13 293 246 16 16 chr12 142762083 142762205 -1024250 - L1MC5 LINE L1 -181 7780 7659 2239 122 0 0 chr12 142763503 142763806 -1022649 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr12 142764447 142764468 -1021987 + (A)n Simple_repeat Simple_repeat 1 21 0 222 37 0 0 chr12 142765493 142765520 -1020935 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2599 18 0 0 chr12 142765748 142766065 -1020390 - AluY SINE Alu 0 317 1 237 178 0 0 chr12 142766182 142766227 -1020228 + GA-rich Low_complexity Low_complexity 2 46 0 1049 99 11 17 chr12 142766233 142766414 -1020041 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 282 100 0 0 chr12 142766524 142766564 -1019891 + AluJo SINE Alu 1 40 -260 503 117 13 0 chr12 142766564 142766641 -1019814 + AluSg/x SINE Alu 211 288 -21 2536 70 0 0 chr12 142767128 142767429 -1019026 + AluY SINE Alu 1 301 -10 228 67 0 0 chr12 142767993 142768023 -1018432 + (A)n Simple_repeat Simple_repeat 1 30 0 1638 155 10 44 chr12 142768607 142768904 -1017551 + AluJo SINE Alu 15 301 -11 509 154 36 27 chr12 142769433 142769543 -1016912 + Charlie5 DNA MER1_type 2364 2474 -138 1142 74 0 0 chr12 142769664 142769799 -1016656 + AluSq/x SINE Alu 1 135 -177 2260 110 10 7 chr12 142769799 142770108 -1016347 + AluSx SINE Alu 1 310 -2 417 270 93 55 chr12 142770430 142770542 -1015913 + L1MC5 LINE L1 7681 7787 -174 207 114 0 0 chr12 142770542 142770577 -1015878 + (TG)n Simple_repeat Simple_repeat 2 36 0 417 270 93 55 chr12 142770577 142770701 -1015754 + L1MC5 LINE L1 7787 7926 -35 2281 107 3 10 chr12 142770704 142771013 -1015442 + AluSg SINE Alu 1 307 -3 1987 103 82 4 chr12 142771688 142771969 -1014486 - AluSx SINE Alu -8 304 2 2325 199 60 9 chr12 142771973 142772215 -1014240 - Charlie1a DNA MER1_type -1583 1178 950 2471 82 3 9 chr12 142772215 142772530 -1013925 - AluSp SINE Alu 0 313 1 2325 199 60 9 chr12 142772530 142772819 -1013636 - Charlie1a DNA MER1_type -1811 950 620 981 178 0 0 chr12 142772830 142772993 -1013462 + FRAM SINE Alu 11 173 -3 2410 81 0 0 chr12 142772997 142773292 -1013163 + AluSg SINE Alu 1 295 -15 987 107 23 0 chr12 142773312 142773443 -1013012 + AluSq/x SINE Alu 1 134 -179 982 220 118 13 chr12 142773447 142773751 -1012704 - Charlie1a DNA MER1_type -1119 336 1 2276 124 0 0 chr12 142773796 142774095 -1012360 + AluSx SINE Alu 1 299 -13 2336 112 0 7 chr12 142774880 142775185 -1011270 + AluSx SINE Alu 1 303 -9 486 332 25 15 chr12 142776055 142776251 -1010204 + L1ME LINE L1 4503 4700 -1446 1774 172 30 13 chr12 142776255 142776557 -1009898 + AluJb SINE Alu 1 307 -5 255 125 0 0 chr12 142776560 142776600 -1009855 + (GGA)n Simple_repeat Simple_repeat 3 42 0 438 277 147 22 chr12 142776601 142776765 -1009690 + L1ME LINE L1 4692 4834 -1312 2564 53 3 0 chr12 142776765 142777065 -1009390 + AluY SINE Alu 1 301 -10 438 277 147 22 chr12 142777065 142777245 -1009210 + L1ME LINE L1 4834 5094 -1052 330 303 90 41 chr12 142777441 142777884 -1008571 + L1ME LINE L1 5255 5721 -400 1356 107 0 11 chr12 142777969 142778156 -1008299 + AluSc SINE Alu 118 302 -7 1683 246 112 32 chr12 142778475 142778973 -1007482 + L2 LINE L2 1681 2241 -1073 2223 100 3 10 chr12 142778973 142779273 -1007182 + AluSx SINE Alu 1 298 -14 1683 246 112 32 chr12 142779273 142779400 -1007055 + L2 LINE L2 2241 2356 -958 1506 202 44 125 chr12 142779447 142779863 -1006592 + L1MC4a LINE L1 6598 6953 -855 2239 117 0 19 chr12 142779863 142780170 -1006285 - AluSx SINE Alu -11 301 1 1506 202 44 125 chr12 142780170 142780347 -1006108 + L1MC4a LINE L1 6953 7143 -665 2055 136 3 0 chr12 142780851 142781146 -1005309 + AluSx SINE Alu 5 300 -12 252 247 13 0 chr12 142781295 142781372 -1005083 + MER116 DNA Mariner 2 79 -1 2251 124 3 0 chr12 142781461 142781768 -1004687 - AluSx SINE Alu -4 308 1 23 54 0 0 chr12 142781935 142781972 -1004483 + AT_rich Low_complexity Low_complexity 1 37 0 192 125 0 0 chr12 142782411 142782443 -1004012 + (CA)n Simple_repeat Simple_repeat 2 33 0 543 104 31 10 chr12 142782469 142782565 -1003890 + MER4A LTR ERV1 1 98 -566 1581 130 5 80 chr12 142782565 142782938 -1003517 + MER4A LTR ERV1 261 664 0 464 129 26 69 chr12 142783588 142783704 -1002751 - AluSg/x SINE Alu 0 310 200 2223 135 0 0 chr12 142783704 142784015 -1002440 - AluSx SINE Alu -1 311 1 1499 135 0 5 chr12 142784015 142784230 -1002225 - AluJb SINE Alu -98 214 1 1457 210 203 30 chr12 142784360 142784658 -1001797 - LTR54 LTR ERV1 0 510 265 2060 147 3 0 chr12 142784658 142784965 -1001490 + AluSx SINE Alu 1 308 -4 1457 210 203 30 chr12 142784965 142785100 -1001355 - LTR54 LTR ERV1 -245 265 2 830 193 53 0 chr12 142785585 142785735 -1000720 - FRAM SINE Alu -19 157 1 261 0 0 0 chr12 142787208 142787237 -999218 + (TG)n Simple_repeat Simple_repeat 2 30 0 2153 115 7 20 chr12 142787415 142787720 -998735 + AluSq SINE Alu 1 301 -12 1661 219 18 13 chr12 142787720 142788109 -998346 + MER39B LTR ERV1 262 652 -1 269 271 104 0 chr12 142788324 142788420 -998035 + L2 LINE L2 3162 3267 -5 1677 158 49 14 chr12 142788432 142788716 -997739 - AluJb SINE Alu -17 295 2 2328 120 0 0 chr12 142788743 142789044 -997411 - AluSx SINE Alu -11 301 1 581 281 18 35 chr12 142789721 142789949 -996506 - MER58A DNA MER1_type 0 224 1 2406 76 0 0 chr12 142790618 142790907 -995548 - AluSx SINE Alu -18 294 6 440 242 127 0 chr12 142791505 142791670 -994785 - MER20 DNA MER1_type -18 201 16 5105 102 21 39 chr12 142791883 142792403 -994052 - MER4E LTR ERV1 0 779 276 2229 112 3 0 chr12 142792403 142792699 -993756 - AluSx SINE Alu -14 298 2 5105 102 21 39 chr12 142792699 142792971 -993484 - MER4E LTR ERV1 -503 276 1 288 264 136 18 chr12 142792971 142793081 -993374 - MIR SINE MIR -29 233 111 1244 137 14 5 chr12 142794099 142794310 -992145 - AluSg/x SINE Alu -3 306 94 429 279 202 0 chr12 142794386 142794644 -991811 + L2 LINE L2 2810 3119 -194 3993 97 11 20 chr12 142794649 142795038 -991417 + MER41A LTR ERV1 1 385 -169 2221 115 7 0 chr12 142795038 142795343 -991112 + AluSq SINE Alu 1 307 -6 3993 97 11 20 chr12 142795343 142795512 -990943 + MER41A LTR ERV1 385 554 0 1718 150 21 17 chr12 142795513 142795800 -990655 - AluJb SINE Alu -14 298 11 885 98 0 63 chr12 142795837 142795980 -990475 - AluSg/x SINE Alu -2 308 175 2328 89 3 0 chr12 142796292 142796584 -989871 + AluSx SINE Alu 1 293 -19 396 0 0 0 chr12 142796650 142796694 -989761 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 31 0 0 chr12 142796814 142796846 -989609 + GC_rich Low_complexity Low_complexity 1 32 0 28 61 0 0 chr12 142797358 142797407 -989048 + GC_rich Low_complexity Low_complexity 1 49 0 204 157 0 39 chr12 142797500 142797551 -988904 + (CCG)n Simple_repeat Simple_repeat 1 49 0 1901 164 3 0 chr12 142799220 142799513 -986942 + AluSx SINE Alu 3 296 -16 323 330 80 5 chr12 142799736 142799813 -986642 + Charlie8 DNA MER1_type 12 82 -259 1709 184 7 20 chr12 142799813 142800117 -986338 - AluJo SINE Alu -12 300 1 323 330 80 5 chr12 142800117 142800251 -986204 + Charlie8 DNA MER1_type 82 239 -102 589 259 94 94 chr12 142800329 142800784 -985671 - MLT1J LTR MaLR -56 455 1 390 235 0 88 chr12 142800789 142800815 -985640 + L1M4 LINE L1 3861 3888 -2258 4230 87 5 2 chr12 142800815 142801367 -985088 + MER41A LTR ERV1 1 554 0 390 235 0 88 chr12 142801367 142801476 -984979 + L1M4 LINE L1 3888 3984 -2162 211 135 0 39 chr12 142801477 142801529 -984926 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 286 307 53 53 chr12 142801664 142801814 -984641 + MER20B DNA MER1_type 24 173 -610 1274 215 60 98 chr12 142801840 142802174 -984281 - MLT2B1 LTR ERVL 0 520 208 1908 126 10 17 chr12 142802174 142802468 -983987 - AluSx SINE Alu -20 292 1 1274 215 60 98 chr12 142802468 142802603 -983852 - MLT2B1 LTR ERVL -312 208 69 2202 133 42 5 chr12 142802623 142803006 -983449 + MSTA LTR MaLR 1 397 -31 1781 136 111 0 chr12 142803007 142803286 -983169 - AluSg SINE Alu 0 310 1 1869 100 7 100 chr12 142803300 142803508 -982947 - AluSc SINE Alu 0 313 145 2261 112 0 0 chr12 142803508 142803811 -982644 - AluY SINE Alu -8 303 1 1869 100 7 100 chr12 142803811 142803944 -982511 - AluSc SINE Alu -168 145 1 436 254 38 109 chr12 142806535 142806667 -979788 - MLT1D LTR MaLR -78 389 249 740 161 0 29 chr12 142806667 142806804 -979651 - FLAM_C SINE Alu 0 133 1 436 254 38 109 chr12 142806804 142806898 -979557 - MLT1D LTR MaLR -218 249 150 2230 137 0 0 chr12 142806898 142807204 -979251 - AluSx SINE Alu -6 306 1 436 254 38 109 chr12 142807204 142807331 -979124 - MLT1D LTR MaLR -317 150 79 814 205 63 135 chr12 142807331 142807789 -978666 + MSTC LTR MaLR 1 425 -3 436 254 38 109 chr12 142807789 142807863 -978592 - MLT1D LTR MaLR -388 79 1 180 0 0 0 chr12 142807890 142807910 -978545 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1914 164 3 13 chr12 142807912 142808216 -978239 - AluSx SINE Alu -11 301 1 239 217 139 61 chr12 142808350 142808465 -977990 + L2 LINE L2 3141 3264 -8 2172 114 0 3 chr12 142808528 142808817 -977638 - AluSx SINE Alu -24 288 1 183 276 0 35 chr12 142808935 142808993 -977462 + MIR SINE MIR 90 145 -63 198 0 0 0 chr12 142809510 142809532 -976923 + (TG)n Simple_repeat Simple_repeat 1 22 0 776 128 0 7 chr12 142809532 142809680 -976775 + (GA)n Simple_repeat Simple_repeat 2 148 0 369 156 31 0 chr12 142809700 142809796 -976659 + GA-rich Low_complexity Low_complexity 2 100 0 23 68 0 0 chr12 142810241 142810285 -976170 + AT_rich Low_complexity Low_complexity 1 44 0 2028 123 20 17 chr12 142810335 142810628 -975827 + AluSp SINE Alu 1 294 -19 326 347 62 11 chr12 142810709 142810885 -975570 - MIR SINE MIR -2 260 76 620 297 115 25 chr12 142811236 142811274 -975181 - L1ME4a LINE L1 -217 5904 5871 2248 249 29 15 chr12 142811274 142811889 -974566 + MLT1E3 LTR MaLR 1 624 0 620 297 115 25 chr12 142811889 142812408 -974047 - L1ME4a LINE L1 -250 5871 5295 1333 125 56 0 chr12 142812408 142812640 -973815 - L1MA3 LINE L1 0 6305 6061 2121 116 0 0 chr12 142812646 142812959 -973496 - AluSx SINE Alu 0 313 1 2457 67 3 13 chr12 142813000 142813312 -973143 - AluY SINE Alu -2 309 1 998 168 0 35 chr12 142813315 142813488 -972967 - AluSg/x SINE Alu 0 312 146 4473 101 3 5 chr12 142813488 142814115 -972340 - L1MA3 LINE L1 -212 6093 5468 2010 91 0 40 chr12 142814118 142814323 -972132 - AluSg SINE Alu -20 290 99 3749 107 0 4 chr12 142814323 142814836 -971619 - MER9 LTR ERVK 0 511 1 2010 91 0 40 chr12 142814836 142814926 -971529 - AluSg SINE Alu -211 99 7 1870 149 3 60 chr12 142814933 142814977 -971478 - L1MA3 LINE L1 -743 5403 5358 1953 139 0 0 chr12 142814977 142815272 -971183 - AluSx SINE Alu -17 295 1 1870 149 3 60 chr12 142815272 142815674 -970781 - L1MA3 LINE L1 -788 5358 4935 2018 124 10 0 chr12 142815674 142815972 -970483 - AluSx SINE Alu -11 301 1 2248 83 7 0 chr12 142815981 142816281 -970174 - AluSp SINE Alu -11 302 1 1870 149 3 60 chr12 142816281 142816365 -970090 - L1MA3 LINE L1 -1084 5062 4975 942 303 66 62 chr12 142816369 142816514 -969941 - MLT1K LTR MaLR -5 583 440 1544 133 56 15 chr12 142816514 142816784 -969671 - AluSx SINE Alu -5 307 27 942 303 66 62 chr12 142816784 142817003 -969452 - MLT1K LTR MaLR -148 440 223 2239 103 0 0 chr12 142817003 142817314 -969141 - AluSx SINE Alu -1 311 1 942 303 66 62 chr12 142817314 142817526 -968929 - MLT1K LTR MaLR -365 223 4 1238 413 0 3 chr12 142817592 142817928 -968527 - AluY SINE Alu 0 335 1 2001 98 10 3 chr12 142818013 142818340 -968115 + AluSc SINE Alu 1 329 0 2127 105 7 10 chr12 142818656 142818960 -967495 + AluSq SINE Alu 1 303 -10 494 256 77 19 chr12 142819172 142819328 -967127 + L1MC4a LINE L1 5574 5738 -383 199 289 0 0 chr12 142819501 142819553 -966902 + MIR SINE MIR 197 248 -14 347 235 10 102 chr12 142819573 142819671 -966784 - L1MC4 LINE L1 -1340 6702 6614 2000 135 3 10 chr12 142819672 142819984 -966471 - AluSx SINE Alu 0 312 3 2434 53 0 0 chr12 142819991 142820293 -966162 - AluY SINE Alu -9 302 1 269 227 80 13 chr12 142820402 142820477 -965978 + L1ME4a LINE L1 5999 6078 -43 310 300 13 53 chr12 142820534 142820684 -965771 + L1MC4a LINE L1 5749 5892 -1916 389 282 166 32 chr12 142821080 142821357 -965098 + L1MC/D LINE L1 5509 5822 -1986 1637 152 0 18 chr12 142821475 142821758 -964697 + AluSx SINE Alu 1 278 -34 771 42 0 0 chr12 142821770 142821865 -964590 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1337 87 33 0 chr12 142821907 142822091 -964364 + L1PA11 LINE L1 5985 6174 0 1703 159 3 26 chr12 142822321 142822630 -963825 + AluJo SINE Alu 1 302 -10 321 301 177 38 chr12 142822819 142823005 -963450 + L1MC4a LINE L1 5713 5924 -1884 1777 229 109 15 chr12 142823063 142823522 -962933 + MLT1F LTR MaLR 41 542 0 848 202 67 125 chr12 142824104 142824599 -961856 + LTR37B LTR ERV1 1 466 -2 1527 163 3 33 chr12 142824633 142824940 -961515 + AluJb SINE Alu 14 311 -1 2000 123 0 13 chr12 142825400 142825721 -960734 - AluSq SINE Alu 0 313 1 333 0 0 0 chr12 142826144 142826181 -960274 + (CA)n Simple_repeat Simple_repeat 2 38 0 437 234 70 75 chr12 142826247 142826448 -960007 + L1MC4a LINE L1 5129 5328 -818 1735 178 3 7 chr12 142826452 142826755 -959700 + AluJb SINE Alu 1 302 -10 1977 110 0 0 chr12 142826755 142827026 -959429 + AluSx SINE Alu 1 272 -40 1042 60 27 0 chr12 142827027 142827176 -959279 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 212 196 0 18 chr12 142827178 142827234 -959221 + G-rich Low_complexity Low_complexity 4 58 0 * 557 190 17 22 chr12 142827227 142827406 -959049 + GA-rich Low_complexity Low_complexity 1 178 0 336 219 133 29 chr12 142827416 142827521 -958934 + L1MC4a LINE L1 5290 5405 -2403 814 306 41 26 chr12 142827573 142827962 -958493 + L1MC4a LINE L1 5512 5906 -1902 1690 172 3 13 chr12 142828040 142828342 -958113 + AluJb SINE Alu 1 299 -13 270 143 0 0 chr12 142828343 142828392 -958063 + (GA)n Simple_repeat Simple_repeat 2 50 0 192 158 0 0 chr12 142828460 142828498 -957957 + (TG)n Simple_repeat Simple_repeat 2 39 0 2241 49 28 14 chr12 142828992 142829311 -957144 + AluSg SINE Alu 1 310 0 1961 137 3 0 chr12 142830226 142830526 -955929 - AluSx SINE Alu -11 301 1 357 100 0 0 chr12 142831004 142831054 -955401 - Alu SINE Alu -6 294 245 1492 105 151 0 chr12 142831057 142831296 -955159 + AluSx SINE Alu 25 299 -13 274 247 27 0 chr12 142831526 142831599 -954856 + MER33 DNA MER1_type 27 101 -223 21 36 0 0 chr12 142831725 142831753 -954702 + AT_rich Low_complexity Low_complexity 1 28 0 1721 151 7 10 chr12 142831765 142832063 -954392 + AluJo SINE Alu 1 297 -15 2231 101 3 0 chr12 142832066 142832373 -954082 + AluSx SINE Alu 1 308 -4 564 228 0 0 chr12 142832388 142832511 -953944 + MER33 DNA MER1_type 228 350 -13 299 307 73 20 chr12 142833056 142833206 -953249 + MLT1K LTR MaLR 395 552 -36 255 260 26 26 chr12 142833696 142833773 -952682 - L2 LINE L2 -28 3244 3168 2332 73 3 13 chr12 142833807 142834123 -952332 - AluSq SINE Alu 0 313 1 298 269 90 0 chr12 142834140 142834218 -952237 + MER2 DNA MER2_type 261 345 0 552 147 0 10 chr12 142834224 142834326 -952129 + L1MA7 LINE L1 6175 6275 -16 1720 135 12 61 chr12 142834529 142834856 -951599 - AluSx SINE Alu -1 311 1 366 311 106 6 chr12 142834872 142835033 -951422 - MIR SINE MIR -1 261 85 199 409 9 0 chr12 142835374 142835484 -950971 - MIR SINE MIR -65 143 33 935 271 84 81 chr12 142836397 142836799 -949656 + L1MC4 LINE L1 6907 7313 -729 2039 151 5 69 chr12 142836799 142837120 -949335 + MER47A DNA MER2_type 1 294 -2029 1746 68 0 0 chr12 142837120 142837341 -949114 - AluY SINE Alu -2 309 89 2039 151 5 69 chr12 142837341 142837410 -949045 + MER47A DNA MER2_type 294 366 0 935 271 84 81 chr12 142837410 142837770 -948685 + L1MC4 LINE L1 7313 7671 -371 272 305 22 6 chr12 142837982 142838129 -948326 + L1MD3 LINE L1 7892 8040 -2 402 327 25 31 chr12 142838151 142838313 -948142 + MIR SINE MIR 31 191 -71 1447 187 0 14 chr12 142838355 142838633 -947822 - AluJo SINE Alu -32 280 7 2300 70 6 29 chr12 142838879 142839195 -947260 + AluY SINE Alu 3 311 0 2193 106 0 0 chr12 142839261 142839563 -946892 + AluSx SINE Alu 1 302 -10 880 225 10 15 chr12 142839587 142839830 -946625 + L1M4 LINE L1 4935 5166 -980 763 207 0 0 chr12 142839835 142839970 -946485 + FLAM_C SINE Alu 6 140 -3 1109 170 24 36 chr12 142839971 142840224 -946231 + L1M4 LINE L1 5152 5401 -745 1984 123 7 10 chr12 142840225 142840533 -945922 + AluSx SINE Alu 1 307 -5 2060 99 6 29 chr12 142840533 142840845 -945610 + AluSp SINE Alu 1 306 -7 584 161 96 27 chr12 142840875 142841012 -945443 - MLT1B LTR MaLR -267 123 1 199 321 147 9 chr12 142841157 142841266 -945189 + L2 LINE L2 3184 3307 -6 1581 161 64 47 chr12 142841832 142841880 -944575 - L1MA8 LINE L1 -10 6281 6235 2199 111 0 0 chr12 142841880 142842186 -944269 - AluSx SINE Alu -6 306 1 1581 161 64 47 chr12 142842186 142842500 -943955 - L1MA8 LINE L1 -56 6235 5920 301 291 17 51 chr12 142842654 142842771 -943684 + MER5B DNA MER1_type 64 176 -2 195 146 0 0 chr12 142843215 142843256 -943199 + (CA)n Simple_repeat Simple_repeat 1 41 0 501 229 0 0 chr12 142843431 142843562 -942893 + (TG)n Simple_repeat Simple_repeat 1 131 0 2373 90 0 0 chr12 142846358 142846670 -939785 + AluSx SINE Alu 1 312 0 2079 89 45 0 chr12 142846674 142846966 -939489 + AluY SINE Alu 1 305 -6 365 274 73 20 chr12 142847384 142847588 -938867 + MLT1J LTR MaLR 258 472 -39 205 289 22 33 chr12 142847766 142847856 -938599 + MIR SINE MIR 141 229 -33 1849 69 6 1 chr12 142848244 142848486 -937969 + L1PA6 LINE L1 5889 6131 -23 213 39 0 0 chr12 142848486 142848512 -937943 + (TA)n Simple_repeat Simple_repeat 1 26 0 2080 94 10 7 chr12 142850260 142850567 -935888 + AluSc SINE Alu 1 308 -1 216 0 0 0 chr12 142851377 142851401 -935054 + (A)n Simple_repeat Simple_repeat 1 24 0 1828 134 0 26 chr12 142851438 142851743 -934712 + AluSg SINE Alu 11 307 -3 1633 208 14 64 chr12 142852075 142852512 -933943 + L1MB7 LINE L1 5750 6164 -20 319 293 132 12 chr12 142852791 142852958 -933497 + MIR SINE MIR 28 214 -48 199 171 49 0 chr12 142853031 142853072 -933383 + MIR SINE MIR 211 253 -9 209 180 20 0 chr12 142853298 142853348 -933107 + (TA)n Simple_repeat Simple_repeat 2 52 0 2094 139 96 15 chr12 142853361 142853757 -932698 + MSTA LTR MaLR 1 428 0 240 91 0 0 chr12 142853757 142853790 -932665 - Alu SINE Alu -23 110 78 1184 139 0 106 chr12 142853790 142854027 -932428 - AluSx SINE Alu -100 212 1 693 266 93 0 chr12 142855002 142855239 -931216 - MIR SINE MIR -2 260 2 2212 120 68 3 chr12 142855349 142855700 -930755 - THE1C LTR MaLR -1 374 1 2451 50 0 0 chr12 142856853 142857150 -929305 + AluY SINE Alu 1 297 -14 592 250 18 37 chr12 142857162 142857326 -929129 - MIR SINE MIR -10 252 92 702 227 0 0 chr12 142857542 142857683 -928772 + FLAM_A SINE Alu 1 141 -1 2028 111 27 0 chr12 142857745 142858042 -928413 - AluSx SINE Alu -7 305 1 238 208 56 80 chr12 142858551 142858676 -927779 + LTR67 LTR ERVL 412 533 -24 2167 92 34 0 chr12 142858813 142859108 -927347 + AluSx SINE Alu 1 305 -7 282 246 269 0 chr12 142859559 142859689 -926766 - L2 LINE L2 -221 3092 2928 319 243 45 55 chr12 142859992 142860154 -926301 - MER63 DNA MER1_type -6 1682 676 300 53 0 0 chr12 142861365 142861403 -925052 + (TG)n Simple_repeat Simple_repeat 1 38 0 2300 75 3 3 chr12 142861699 142862004 -924451 + AluSx SINE Alu 1 305 -7 2046 99 0 20 chr12 142862006 142862308 -924147 + AluSc SINE Alu 1 296 -13 312 223 31 92 chr12 142862313 142862443 -924012 + Charlie8 DNA MER1_type 429 550 -1867 563 248 148 30 chr12 142862769 142863115 -923340 + MER113 DNA MER1_type? 6 415 -106 1993 107 3 47 chr12 142863309 142863627 -922828 - AluSx SINE Alu -8 304 1 1108 220 116 9 chr12 142864029 142864356 -922099 - MLT1A1 LTR MaLR -3 362 1 2157 117 0 3 chr12 142864385 142864694 -921761 + AluSq SINE Alu 1 308 -5 2082 108 26 7 chr12 142865275 142865581 -920874 - AluSx SINE Alu 0 312 1 470 146 0 12 chr12 142866056 142866138 -920317 + AluY SINE Alu 219 299 -12 1133 112 12 0 chr12 142866159 142866328 -920127 + MER2 DNA MER2_type 44 214 -131 216 0 0 0 chr12 142866358 142866382 -920073 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2045 98 4 0 chr12 142866387 142866664 -919791 - AluSx SINE Alu -34 278 1 298 269 90 0 chr12 142866681 142866759 -919696 + MER2 DNA MER2_type 261 345 0 611 155 0 9 chr12 142866765 142866881 -919574 + L1MA7 LINE L1 6175 6289 -2 23 54 0 0 chr12 142866886 142866923 -919532 + AT_rich Low_complexity Low_complexity 1 37 0 264 282 199 23 chr12 142867086 142867217 -919238 - L2 LINE L2 -572 2742 2589 1641 78 0 5 chr12 142868236 142868455 -918000 - AluY SINE Alu -6 305 88 456 100 14 0 chr12 142868455 142868525 -917930 + MER39B LTR ERV1 196 266 -387 2280 78 0 0 chr12 142868528 142868823 -917632 + AluY SINE Alu 1 295 -16 21 0 0 0 chr12 142869098 142869119 -917336 + AT_rich Low_complexity Low_complexity 1 21 0 1960 98 7 21 chr12 142869827 142870158 -916297 - AluSx SINE Alu 0 327 1 3138 80 14 5 chr12 142870457 142870894 -915561 + L1PA11 LINE L1 5731 6171 -3 371 155 60 0 chr12 142870928 142871012 -915443 + L1MA9 LINE L1 6224 6312 0 225 324 74 7 chr12 142871121 142871269 -915186 + MLT1H LTR MaLR 72 229 -320 1632 128 0 4 chr12 142871367 142871618 -914837 + AluSx SINE Alu 58 307 -5 1443 223 78 45 chr12 142871867 142872227 -914228 - MER92B LTR ERV1 0 636 251 2314 73 0 7 chr12 142872227 142872528 -913927 - AluY SINE Alu -12 299 1 1443 223 78 45 chr12 142872528 142872705 -913750 - MER92B LTR ERV1 -385 251 81 226 163 47 23 chr12 142873215 142873258 -913197 - MER92B LTR ERV1 -592 44 1 244 204 41 0 chr12 142873258 142873307 -913148 + L2 LINE L2 3211 3261 -11 3243 123 44 6 chr12 142873602 142874080 -912375 + MER1A DNA MER1_type 34 529 0 2107 97 7 0 chr12 142874719 142875008 -911447 + AluSg SINE Alu 15 305 -5 203 209 75 15 chr12 142875064 142875131 -911324 + L2 LINE L2 3243 3313 0 1905 153 0 10 chr12 142875616 142875929 -910526 + AluSx SINE Alu 1 310 -2 1246 224 186 21 chr12 142876296 142876725 -909730 + MLT1J LTR MaLR 11 510 -1 2052 132 7 0 chr12 142877087 142877391 -909064 + AluSx SINE Alu 1 306 -6 261 0 0 0 chr12 142877452 142877481 -908974 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1776 141 0 7 chr12 142877488 142877758 -908697 - AluJo SINE Alu -31 281 14 317 263 136 0 chr12 142877938 142878056 -908399 - MER5B DNA MER1_type 0 178 45 229 301 0 15 chr12 142878187 142878268 -908187 + GA-rich Low_complexity Low_complexity 1 134 0 312 330 37 18 chr12 142878832 142878941 -907514 + L1MC4 LINE L1 6593 6703 -1339 286 250 23 23 chr12 142878941 142879029 -907426 - L1MC4 LINE L1 -1339 6703 6616 222 233 0 0 chr12 142879032 142879075 -907380 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 237 133 0 0 chr12 142879075 142879120 -907335 + LTR66 LTR ERVL 398 442 -168 335 209 0 11 chr12 142879130 142879221 -907234 + (TA)n Simple_repeat Simple_repeat 1 90 0 1252 144 9 9 chr12 142879222 142879444 -907011 - AluSg/x SINE Alu -4 306 85 385 59 0 0 chr12 142880115 142880166 -906289 + L1MA8 LINE L1 6081 6131 -160 2127 103 3 3 chr12 142880167 142880499 -905956 + AluSx SINE Alu 1 332 0 1607 155 4 18 chr12 142880816 142881094 -905361 + AluSq SINE Alu 1 274 -39 1654 174 3 0 chr12 142884139 142884432 -902023 + AluJo SINE Alu 1 294 -18 1039 275 78 27 chr12 142885125 142885606 -900849 + LTR1B LTR ERV1 33 603 -332 1677 227 102 23 chr12 142885707 142885845 -900610 + MLT1F LTR MaLR 11 137 -405 185 0 40 0 chr12 142885845 142885870 -900585 + (TC)n Simple_repeat Simple_repeat 2 27 0 1677 227 102 23 chr12 142885870 142886202 -900253 + MLT1F LTR MaLR 137 518 -24 1153 218 203 0 chr12 142886209 142886525 -899930 - MLT1F1 LTR MaLR 0 567 188 898 210 6 7 chr12 142886555 142886751 -899704 - MLT1B LTR MaLR -11 374 169 1677 170 0 29 chr12 142886760 142887071 -899384 - AluJb SINE Alu -10 302 1 677 219 0 0 chr12 142887089 142887212 -899243 - FLAM_C SINE Alu -20 123 1 727 185 73 7 chr12 142887213 142887364 -899091 - MLT1B LTR MaLR -219 171 11 612 271 11 33 chr12 142887379 142887560 -898895 - MLT1E LTR MaLR -364 178 2 921 258 58 35 chr12 142887796 142888191 -898264 - L1MC4a LINE L1 -1823 5985 5582 1466 111 11 82 chr12 142888270 142888432 -898023 + AluSx SINE Alu 53 188 -124 2068 135 0 0 chr12 142888432 142888743 -897712 + AluSx SINE Alu 1 311 -1 1466 111 11 82 chr12 142888743 142888859 -897596 + AluSx SINE Alu 188 311 -1 1672 127 5 80 chr12 142889509 142889882 -896573 - MER4A LTR ERV1 0 664 261 578 104 31 10 chr12 142889882 142889978 -896477 - MER4A LTR ERV1 -566 98 1 192 125 0 0 chr12 142890004 142890036 -896419 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr12 142890475 142890512 -895943 + AT_rich Low_complexity Low_complexity 1 37 0 2099 124 3 0 chr12 142890679 142890986 -895469 + AluSx SINE Alu 1 308 -4 263 247 13 0 chr12 142891075 142891152 -895303 - MER116 DNA Mariner -1 79 2 1909 136 3 0 chr12 142891301 142891596 -894859 - AluSx SINE Alu -12 300 5 1361 187 48 14 chr12 142891863 142892152 -894303 - Charlie1a DNA MER1_type -537 918 620 898 178 0 0 chr12 142892163 142892326 -894129 + FRAM SINE Alu 11 173 -3 2271 81 0 0 chr12 142892330 142892625 -893830 + AluSg SINE Alu 1 295 -15 922 107 23 0 chr12 142892645 142892776 -893679 + AluSq/x SINE Alu 1 134 -179 900 241 130 7 chr12 142892780 142893079 -893376 - Charlie1a DNA MER1_type -1119 336 1 635 252 77 0 chr12 142893120 142893394 -893061 + AluSq SINE Alu 3 297 -6 848 165 0 0 chr12 142893598 142893731 -892724 - FLAM_C SINE Alu 0 133 1 432 156 0 0 chr12 142893731 142893808 -892647 + L1MA8 LINE L1 6190 6266 -25 1970 121 3 3 chr12 142893909 142894198 -892257 - AluSx SINE Alu -23 289 1 2886 155 52 10 chr12 142894199 142894722 -891733 - L1MA8 LINE L1 -160 6131 5587 2368 69 3 0 chr12 142894967 142895270 -891185 + AluY SINE Alu 1 304 -7 2572 184 29 18 chr12 142895272 142895827 -890628 + L1MB4 LINE L1 5579 6139 -41 256 200 17 0 chr12 142895935 142895995 -890460 + (TTA)n Simple_repeat Simple_repeat 1 61 0 727 182 84 0 chr12 142946347 142946490 -839965 - MLT1D LTR MaLR -325 180 26 1517 205 67 15 chr12 142946542 142946869 -839586 - MER2 DNA MER2_type 0 344 1 199 304 0 18 chr12 142947356 142947412 -839043 - L2 LINE L2 -1 3271 3217 308 276 8 0 chr12 142947643 142947770 -838685 + (TGGA)n Simple_repeat Simple_repeat 3 130 0 367 289 11 0 chr12 142947800 142948079 -838376 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 251 250 12 0 chr12 142948100 142948184 -838271 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 365 271 7 0 chr12 142948203 142948358 -838097 + (TGGA)n Simple_repeat Simple_repeat 4 159 0 186 250 0 0 chr12 142948374 142948430 -838025 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 443 223 133 18 chr12 142949956 142950122 -836333 - MER5A DNA MER1_type -3 186 2 387 216 29 20 chr12 142950199 142950301 -836154 + L2 LINE L2 2263 2365 -949 358 167 102 65 chr12 142950501 142950609 -835846 + L1MA7 LINE L1 6060 6171 -120 823 224 231 51 chr12 142951604 142952062 -834393 - MLT1G1 LTR MaLR -13 542 34 1716 181 3 10 chr12 142952579 142952883 -833572 + AluJb SINE Alu 1 302 -10 743 247 20 18 chr12 142953474 142953667 -832788 + MIR SINE MIR 20 216 -46 247 357 55 60 chr12 142953923 142954290 -832165 + L3 LINE CR1 660 1024 -553 1636 167 3 20 chr12 142954533 142954827 -831628 - AluJo SINE Alu -15 297 9 2793 203 56 13 chr12 142954851 142955462 -830993 - L1MB8 LINE L1 -5 6173 5537 2274 95 20 0 chr12 142955522 142955827 -830628 + AluSx SINE Alu 1 311 -1 180 330 70 26 chr12 142956080 142956195 -830260 + L2 LINE L2 3152 3271 -1 399 320 64 17 chr12 142956253 142956425 -830030 + L3 LINE CR1 1306 1485 -92 973 163 3 14 chr12 142956560 142956839 -829616 + (CAT)n Simple_repeat Simple_repeat 1 451 -82 1005 158 0 0 chr12 142956839 142957016 -829439 + (CACCAT)n Simple_repeat Simple_repeat 4 180 0 973 163 3 14 chr12 142957016 142957099 -829356 + (CAT)n Simple_repeat Simple_repeat 451 533 0 594 291 73 26 chr12 142957210 142957444 -829011 + MIR SINE MIR 17 261 -1 622 165 0 0 chr12 142958217 142958320 -828135 + FLAM_A SINE Alu 30 132 -10 399 349 31 31 chr12 142958444 142958639 -827816 + MIR SINE MIR 35 229 -33 3379 191 10 37 chr12 142958722 142959285 -827170 + L1MA10 LINE L1 5594 6134 -200 390 21 0 0 chr12 142959285 142959332 -827123 + (CA)n Simple_repeat Simple_repeat 2 48 0 3379 191 10 37 chr12 142959332 142959492 -826963 + L1MA10 LINE L1 6134 6297 -37 986 223 70 55 chr12 142959706 142960044 -826411 + LTR37A LTR ERV1 22 368 -58 2069 121 0 7 chr12 142960044 142960350 -826105 - AluSc SINE Alu -5 304 1 986 223 70 55 chr12 142960350 142960410 -826045 + LTR37A LTR ERV1 368 426 0 326 207 17 121 chr12 142960619 142960735 -825720 - MER102a DNA MER1_type -1 329 226 570 288 38 6 chr12 142961077 142961237 -825218 + MIR SINE MIR 97 261 -1 244 315 54 0 chr12 142961499 142961591 -824864 + MLT1K LTR MaLR 2 98 -490 1347 112 49 0 chr12 142961676 142961900 -824555 - L1MB3 LINE L1 -8 6175 5941 28 29 0 0 chr12 142961911 142961946 -824509 + AT_rich Low_complexity Low_complexity 1 35 0 6406 33 0 0 chr12 142961946 142962680 -823775 - L1PA5 LINE L1 -11 6143 5410 384 248 181 8 chr12 142962687 142962820 -823635 + MLT1K LTR MaLR 92 247 -341 298 218 119 59 chr12 142962883 142962984 -823471 + MLT1K LTR MaLR 146 252 -336 235 179 0 0 chr12 142962989 142963028 -823427 + MLT1K LTR MaLR 140 178 -410 290 198 156 39 chr12 142963093 142963250 -823205 + MLT1K LTR MaLR 146 252 -336 329 135 225 22 chr12 142963305 142963394 -823061 + MLT1K LTR MaLR 146 252 -336 255 62 0 0 chr12 142963453 142963485 -822970 + MLT1K LTR MaLR 146 177 -411 880 180 0 12 chr12 142963585 142963752 -822703 - L1MA7 LINE L1 -380 5911 5747 283 269 100 96 chr12 142963774 142964082 -822373 - MER102b DNA MER1_type -3 338 18 931 250 19 5 chr12 142964120 142964332 -822123 + MER58A DNA MER1_type 2 216 -8 315 277 50 30 chr12 142964836 142964937 -821518 + MER91B DNA MER1_type 87 189 -1 1564 165 22 6 chr12 142965013 142965329 -821126 - MER33 DNA MER1_type -3 321 1 1101 228 73 84 chr12 142965919 142966182 -820273 - LTR40b LTR ERVL 0 462 205 1455 196 57 52 chr12 142966182 142966550 -819905 + MLT1A2 LTR MaLR 5 374 0 1101 228 73 84 chr12 142966550 142966751 -819704 - LTR40b LTR ERVL -257 205 3 334 266 9 71 chr12 142966752 142966865 -819590 + MIR SINE MIR 56 161 -101 2360 193 90 21 chr12 142966968 142967537 -818918 - L1MB7 LINE L1 -66 6118 5511 1341 117 9 30 chr12 142967615 142967845 -818610 - L1PB1 LINE L1 0 6151 5927 223 158 18 18 chr12 142968012 142968069 -818386 + CT-rich Low_complexity Low_complexity 4 60 0 230 355 121 24 chr12 142968076 142968200 -818255 - L2 LINE L2 -5 3267 3132 502 294 107 5 chr12 142968210 142968397 -818058 - MIR SINE MIR -56 206 1 257 248 62 9 chr12 142968430 142968543 -817912 - L1MC4 LINE L1 0 8042 7924 629 135 25 29 chr12 142968583 142968833 -817622 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 1161 268 28 32 chr12 142968833 142969299 -817156 - L1MC4 LINE L1 -133 7909 7446 227 201 206 70 chr12 142969369 142969568 -816887 - L1ME4a LINE L1 -2 6119 5894 321 350 68 11 chr12 142970210 142970387 -816068 - L2 LINE L2 -4 3309 3123 371 317 65 0 chr12 142971402 142971525 -814930 + MIR SINE MIR 94 224 -38 1097 180 47 9 chr12 142971563 142971774 -814681 + MER20 DNA MER1_type 1 219 0 545 275 115 23 chr12 142971870 142972088 -814367 + MIR SINE MIR 20 257 -5 628 286 62 28 chr12 142973354 142973742 -812713 - L1ME4a LINE L1 -1 6120 5720 4866 124 24 5 chr12 142973744 142974528 -811927 - L1PA16 LINE L1 -9 6157 5359 267 291 47 0 chr12 142974533 142974619 -811836 - L1ME4a LINE L1 -395 5726 5637 872 156 19 0 chr12 142975513 142975667 -810788 - MLT1D LTR MaLR -317 188 32 1640 65 0 42 chr12 142976146 142976361 -810094 + AluY SINE Alu 100 305 -6 304 306 92 46 chr12 142977143 142977339 -809116 - MIR SINE MIR -22 240 36 1429 208 40 58 chr12 142977472 142977703 -808752 - MLT1B LTR MaLR 0 390 167 1973 148 7 13 chr12 142977703 142978006 -808449 - AluJb SINE Alu -11 301 1 1429 208 40 58 chr12 142978006 142978169 -808286 - MLT1B LTR MaLR -223 167 3 473 176 24 124 chr12 142978384 142978594 -807861 + LTR16A1 LTR ERVL 268 456 -1 337 185 89 139 chr12 142979920 142980028 -806427 + MER113 DNA MER1_type? 127 239 -282 2000 112 36 33 chr12 142980028 142980332 -806123 + AluSx SINE Alu 1 305 -7 337 185 89 139 chr12 142980332 142980453 -806002 + MER113 DNA MER1_type? 239 344 -177 1508 108 50 14 chr12 142980453 142980675 -805780 + MER30 DNA MER1_type 1 230 0 337 185 89 139 chr12 142980675 142980703 -805752 + MER113 DNA MER1_type? 344 372 -149 354 250 162 15 chr12 142981777 142981913 -804542 - Charlie8 DNA MER1_type -2227 190 35 462 256 5 0 chr12 142982882 142983280 -803175 + (CA)n Simple_repeat Simple_repeat 1 400 0 206 205 0 0 chr12 142983280 142983319 -803136 + (CACG)n Simple_repeat Simple_repeat 3 41 0 489 239 0 0 chr12 142984055 142984291 -802164 + (CA)n Simple_repeat Simple_repeat 1 236 0 486 235 0 0 chr12 142984361 142984531 -801924 + (CA)n Simple_repeat Simple_repeat 1 170 0 210 244 0 0 chr12 142984555 142984637 -801818 + (CA)n Simple_repeat Simple_repeat 1 82 0 522 230 0 0 chr12 142984661 142984835 -801620 + (CA)n Simple_repeat Simple_repeat 1 174 0 605 185 0 22 chr12 142984883 142985067 -801388 + (CA)n Simple_repeat Simple_repeat 1 180 0 555 225 0 0 chr12 142985086 142985455 -801000 + (CA)n Simple_repeat Simple_repeat 1 369 0 805 116 78 0 chr12 142985468 142985597 -800858 + MLT1A1 LTR MaLR 227 365 0 353 259 30 38 chr12 142985623 142985754 -800701 - MIR3 SINE MIR -43 165 36 333 250 48 24 chr12 142985927 142985938 -800517 + L1MC4 LINE L1 6613 6622 -1420 2142 34 0 0 chr12 142985938 142986177 -800278 + AluY SINE Alu 47 285 -26 333 250 48 24 chr12 142986177 142986249 -800206 + L1MC4 LINE L1 6622 6698 -1344 211 211 0 0 chr12 142986302 142986340 -800115 + (TG)n Simple_repeat Simple_repeat 2 39 0 1359 178 116 29 chr12 142987095 142987371 -799084 + AluJo SINE Alu 2 301 -11 228 256 115 13 chr12 142987444 142987522 -798933 + MLT1K LTR MaLR 439 524 -64 1920 189 139 9 chr12 142987703 142988127 -798328 - MLT1D LTR MaLR 0 505 27 258 208 57 0 chr12 142988168 142988221 -798234 + LTR67 LTR ERVL 499 554 -3 1317 146 13 99 chr12 142988877 142988985 -797470 - L1MA8 LINE L1 0 6291 6175 507 136 0 12 chr12 142988985 142989066 -797389 + MADE1 DNA Mariner 1 80 0 1317 146 13 99 chr12 142989066 142989165 -797290 - L1MA8 LINE L1 -116 6175 6069 2031 99 4 0 chr12 142989165 142989418 -797037 + AluSx SINE Alu 35 288 -24 1317 146 13 99 chr12 142989418 142989593 -796862 - L1MA8 LINE L1 -222 6069 5941 238 229 61 76 chr12 142989733 142989864 -796591 + LTR16C LTR ERVL 73 201 -290 674 346 45 24 chr12 142990054 142990650 -795805 + HERVL LTR ERVL 2655 3260 -1922 882 270 107 33 chr12 142990726 142991156 -795299 + MLT1C LTR MaLR 6 467 0 275 250 0 0 chr12 142991164 142991224 -795231 + HERVL LTR ERVL 3364 3423 -2062 617 350 93 12 chr12 142991407 142992065 -794390 + HERVL LTR ERVL 3561 4271 -1383 379 241 0 0 chr12 142992072 142992159 -794296 - MLT1D LTR MaLR 0 505 419 293 200 67 11 chr12 142992159 142992249 -794206 - L1M4 LINE L1 -1622 4524 4430 * 373 248 76 38 chr12 142992219 142992457 -793998 - L1M4 LINE L1 -3641 2505 2259 325 263 131 22 chr12 142992472 142992609 -793846 + MIR SINE MIR 111 262 0 243 348 144 8 chr12 142992831 142992949 -793506 + L2 LINE L2 3137 3270 -2 2483 68 0 3 chr12 142993034 142993330 -793125 - AluY SINE Alu -16 295 1 1783 160 3 37 chr12 142994076 142994376 -792079 - AluJo SINE Alu -21 291 2 943 215 4 47 chr12 142994760 142994939 -791516 + L1MB7 LINE L1 5940 6106 -78 2350 96 3 0 chr12 142994939 142995242 -791213 + AluSp SINE Alu 1 304 -9 943 215 4 47 chr12 142995242 142995318 -791137 + L1MB7 LINE L1 6106 6184 0 551 264 7 45 chr12 142995511 142995666 -790789 + MER5A DNA MER1_type 3 151 -38 664 120 9 0 chr12 143000355 143000463 -785992 - L1MA5 LINE L1 -397 5903 5795 472 103 31 0 chr12 143000836 143000918 -785537 + L1PA13 LINE L1 5649 5738 -427 2954 94 5 0 chr12 143001052 143001465 -784990 + L1PA13 LINE L1 5749 6163 0 318 294 88 62 chr12 143002109 143002381 -784074 + L1 LINE L1 4210 4488 -1658 2351 117 0 0 chr12 143002405 143002714 -783741 + AluSx SINE Alu 1 309 -3 673 325 10 23 chr12 143002717 143003038 -783417 + L1MEc LINE L1 896 1186 -4933 308 241 105 45 chr12 143003075 143003208 -783247 + MLT1K LTR MaLR 422 562 -26 955 307 50 5 chr12 143003365 143003743 -782712 + LTR16C LTR ERVL 97 491 0 235 229 108 102 chr12 143004796 143004953 -781502 + MLT1D LTR MaLR 6 163 -342 484 295 117 31 chr12 143005116 143005408 -781047 - L2 LINE L2 -259 3054 2736 693 211 23 0 chr12 143005443 143005571 -780884 - MIR SINE MIR -95 167 37 1151 180 35 0 chr12 143005666 143005866 -780589 - MER3 DNA MER1_type 0 209 3 1366 108 11 5 chr12 143006312 143006498 -779957 - AluSx SINE Alu -125 187 1 658 316 35 55 chr12 143006647 143006873 -779582 - MLT1K LTR MaLR -43 545 316 2262 95 0 51 chr12 143006873 143007188 -779267 - AluSx SINE Alu -13 299 1 658 316 35 55 chr12 143007188 143007474 -778981 - MLT1K LTR MaLR -272 316 43 902 180 56 92 chr12 143007938 143008222 -778233 - MLT1C LTR MaLR -6 461 188 449 279 36 21 chr12 143008680 143008820 -777635 + MIR SINE MIR 2 143 -119 2129 116 7 3 chr12 143008904 143009230 -777225 + AluSq SINE Alu 2 328 0 361 259 271 12 chr12 143009266 143009513 -776942 + L2 LINE L2 3003 3313 0 245 221 132 66 chr12 143010770 143010906 -775549 - MLT1C LTR MaLR -325 224 80 711 273 42 39 chr12 143010932 143011192 -775263 + MIR SINE MIR 2 262 0 638 208 7 0 chr12 143011230 143011379 -775076 + (TG)n Simple_repeat Simple_repeat 1 150 0 1374 158 32 37 chr12 143011565 143011811 -774644 + AluJo SINE Alu 38 282 -30 1362 260 56 30 chr12 143011885 143012133 -774322 - L2 LINE L2 0 3313 3073 2181 138 0 16 chr12 143012133 143012444 -774011 + AluSx SINE Alu 1 306 -6 1362 260 56 30 chr12 143012444 143012486 -773969 - L2 LINE L2 -240 3073 3034 925 221 18 18 chr12 143012486 143012703 -773752 - MER20 DNA MER1_type 0 219 3 1362 260 56 30 chr12 143012703 143012940 -773515 - L2 LINE L2 -279 3034 2778 241 238 175 0 chr12 143013026 143013106 -773349 - MLT1C LTR MaLR -368 99 6 253 223 152 18 chr12 143013119 143013231 -773224 + LTR33 LTR ERVL 382 508 -13 185 171 29 0 chr12 143013572 143013607 -772848 + MIR SINE MIR 117 152 -110 1669 125 8 0 chr12 143013765 143014005 -772450 + AluSx SINE Alu 37 278 -34 225 0 0 0 chr12 143014019 143014044 -772411 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 500 294 156 9 chr12 143014318 143014529 -771926 - MIR SINE MIR 0 262 21 202 217 0 0 chr12 143014530 143014576 -771879 + (TTG)n Simple_repeat Simple_repeat 1 46 0 2291 166 3 0 chr12 143014673 143015064 -771391 - L1MB7 LINE L1 -16 6168 5777 645 202 20 56 chr12 143015684 143015882 -770573 + MER113 DNA MER1_type? 33 223 -298 1937 128 0 0 chr12 143016342 143016654 -769801 - AluSx SINE Alu 0 312 1 452 200 9 27 chr12 143017251 143017361 -769094 - MER103 DNA DNA -10 156 49 407 264 111 21 chr12 143017820 143017964 -768491 + MIR SINE MIR 75 231 -31 1707 47 0 23 chr12 143017964 143018209 -768246 + AluY SINE Alu 74 313 0 805 191 116 20 chr12 143018582 143018781 -767674 - MER20 DNA MER1_type 0 219 2 489 275 110 24 chr12 143019830 143020164 -766291 + L1MC4a LINE L1 5196 5562 -735 948 152 0 41 chr12 143020171 143020216 -766239 - FRAM SINE Alu -148 164 119 2537 104 8 6 chr12 143020216 143020570 -765885 + THE1A LTR MaLR 1 355 0 948 152 0 41 chr12 143020570 143020695 -765760 - FRAM SINE Alu -193 119 1 504 286 97 5 chr12 143020698 143020904 -765551 + L1MC4a LINE L1 5554 5778 -343 262 279 52 32 chr12 143020912 143021066 -765389 - Charlie7 DNA MER1_type 0 2612 2456 245 244 0 64 chr12 143022077 143022155 -764300 + L2 LINE L2 3010 3082 -190 296 294 26 40 chr12 143022503 143022771 -763684 - MLT1H LTR MaLR -219 376 115 316 272 77 83 chr12 143023416 143023559 -762896 + L1MC4a LINE L1 5793 5936 -1872 1701 191 9 12 chr12 143023559 143023905 -762550 + L1MB3 LINE L1 5839 6183 0 316 272 77 83 chr12 143023905 143023930 -762525 + L1MC4a LINE L1 5936 5960 -1848 219 230 48 16 chr12 143024132 143024258 -762197 + (TA)n Simple_repeat Simple_repeat 1 130 0 1456 228 16 38 chr12 143025011 143025384 -761071 - MLT1A1 LTR MaLR 0 365 1 227 206 15 44 chr12 143025384 143025452 -761003 - MER113 DNA MER1_type? -45 476 411 344 217 19 87 chr12 143025600 143025761 -760694 - MER113 DNA MER1_type? -368 153 4 246 231 31 15 chr12 143025850 143025915 -760540 - MIR SINE MIR -73 189 124 1684 156 21 7 chr12 143025976 143026264 -760191 + AluJb SINE Alu 1 292 -20 1380 186 138 21 chr12 143026392 143026719 -759736 + MLT1A1 LTR MaLR 1 365 0 186 43 0 0 chr12 143027813 143027836 -758619 + (A)n Simple_repeat Simple_repeat 1 23 0 368 229 186 71 chr12 143028617 143028757 -757698 + MER91B DNA MER1_type 1 156 -34 1814 137 7 7 chr12 143028917 143029209 -757246 + AluJo SINE Alu 1 292 -20 329 294 18 18 chr12 143029230 143029339 -757116 + L2 LINE L2 3205 3313 0 670 231 0 0 chr12 143029656 143029790 -756665 - Charlie1 DNA MER1_type -6 2755 2622 340 279 163 0 chr12 143029775 143029904 -756551 - Charlie1 DNA MER1_type -2523 238 89 * 1537 210 201 11 chr12 143029907 143030360 -756095 + MLT1F LTR MaLR 4 542 0 546 245 0 0 chr12 143030360 143030453 -756002 - Charlie1 DNA MER1_type -2668 93 1 350 250 0 23 chr12 143030947 143031035 -755420 - MIR SINE MIR 0 262 177 651 243 190 25 chr12 143031422 143031706 -754749 + MLT1K LTR MaLR 250 580 -8 823 257 35 0 chr12 143031950 143032152 -754303 - MER3 DNA MER1_type 0 209 1 2068 92 11 0 chr12 143032257 143032539 -753916 - AluSg SINE Alu -25 285 1 269 358 81 19 chr12 143032553 143032874 -753581 - L2 LINE L2 0 3313 2973 225 322 92 26 chr12 143032874 143033026 -753429 - MER5B DNA MER1_type 0 178 17 324 277 226 7 chr12 143033049 143033204 -753251 + MER5A DNA MER1_type 1 189 0 1060 218 70 12 chr12 143033261 143033306 -753149 - L1MB1 LINE L1 -1 6167 6126 2081 114 0 3 chr12 143033306 143033604 -752851 - AluSg SINE Alu -11 299 3 1060 218 70 12 chr12 143033604 143033801 -752654 - L1MB1 LINE L1 -42 6126 5911 552 180 0 11 chr12 143033806 143033895 -752560 - AluJ SINE Alu -6 296 209 800 187 7 32 chr12 143033895 143034050 -752405 - AluJ SINE Alu -152 160 10 289 277 36 36 chr12 143034457 143034569 -751886 - L2 LINE L2 0 3313 3202 644 284 178 24 chr12 143034599 143034969 -751486 - L2 LINE L2 -4 3309 2883 233 325 38 19 chr12 143035066 143035226 -751229 - L2 LINE L2 -627 2687 2525 198 206 56 151 chr12 143035802 143035928 -750527 - L2 LINE L2 -86 3227 3114 206 248 9 128 chr12 143035953 143036062 -750393 - L2 LINE L2 -86 3227 3132 784 257 95 62 chr12 143036420 143036547 -749908 - Charlie4a DNA MER1_type -1473 488 367 2102 131 0 0 chr12 143036547 143036852 -749603 + AluSx SINE Alu 1 305 -7 784 257 95 62 chr12 143036852 143036863 -749592 - Charlie4a DNA MER1_type -1594 367 358 2202 99 3 10 chr12 143036863 143037176 -749279 + AluSx SINE Alu 1 311 -1 784 257 95 62 chr12 143037176 143037373 -749082 - Charlie4a DNA MER1_type -1603 358 140 1964 164 33 38 chr12 143037373 143037515 -748940 + MLT1A1 LTR MaLR 2 143 -222 2114 139 30 35 chr12 143037515 143037881 -748574 + THE1B LTR MaLR 1 364 0 1964 164 33 38 chr12 143037881 143038104 -748351 + MLT1A1 LTR MaLR 143 365 0 399 174 47 23 chr12 143038105 143038191 -748264 - Charlie4a DNA MER1_type -391 117 30 673 228 89 45 chr12 143038622 143038724 -747731 - MIR SINE MIR -3 259 163 2264 92 0 3 chr12 143038724 143039028 -747427 - AluSg1 SINE Alu -6 303 1 673 228 89 45 chr12 143039028 143039171 -747284 - MIR SINE MIR -99 163 3 2125 102 0 3 chr12 143039473 143039767 -746688 - AluSx SINE Alu -19 293 1 195 42 0 0 chr12 143039846 143039870 -746585 + (TA)n Simple_repeat Simple_repeat 1 24 0 587 30 0 0 chr12 143039880 143039947 -746508 - L1PA5 LINE L1 -14 6140 6074 369 0 0 0 chr12 143040890 143040931 -745524 + (TA)n Simple_repeat Simple_repeat 1 41 0 2155 120 0 0 chr12 143040931 143041230 -745225 - AluSx SINE Alu -13 299 1 526 272 70 33 chr12 143041312 143041584 -744871 - LTR33 LTR ERVL -1 520 239 1266 242 42 31 chr12 143041621 143042079 -744376 - MLT1C LTR MaLR 0 467 5 576 203 94 7 chr12 143042080 143042218 -744237 - LTR33 LTR ERVL -354 167 18 312 259 68 41 chr12 143042814 143042961 -743494 + L2 LINE L2 3094 3244 -69 1961 147 0 6 chr12 143043029 143043343 -743112 - AluJo SINE Alu 0 312 1 2036 139 39 25 chr12 143044432 143044791 -741664 - THE1B LTR MaLR 0 364 1 524 239 86 77 chr12 143045176 143045385 -741070 - MER58C DNA MER1_type -4 211 1 259 340 0 48 chr12 143045555 143045743 -740712 + (CACCC)n Simple_repeat Simple_repeat 1 179 0 577 236 153 64 chr12 143045763 143046076 -740379 + MLT1K LTR MaLR 122 462 -126 288 286 231 7 chr12 143046082 143046229 -740226 + MER5A DNA MER1_type 9 188 -1 372 200 11 42 chr12 143046660 143046755 -739700 - MER5B DNA MER1_type 0 178 87 3626 116 0 52 chr12 143047514 143048068 -738387 + MER1A DNA MER1_type 3 527 0 355 225 144 126 chr12 143048134 143048579 -737876 + LTR67 LTR ERVL 97 549 -8 445 312 14 22 chr12 143048734 143048872 -737583 - MIR3 SINE MIR -51 157 21 884 288 5 0 chr12 143048965 143049180 -737275 + MER58A DNA MER1_type 1 216 -8 196 271 104 21 chr12 143050713 143050809 -735646 - MIR SINE MIR -25 237 134 244 243 69 69 chr12 143051512 143051656 -734799 - Charlie8 DNA MER1_type -2183 234 91 322 322 0 0 chr12 143052022 143052112 -734343 + GA-rich Low_complexity Low_complexity 4 93 0 439 244 202 23 chr12 143052170 143052371 -734084 + MIR SINE MIR 21 250 -12 695 129 0 0 chr12 143053844 143053945 -732510 + AluJ/FLAM SINE Alu 2 102 -210 646 226 154 16 chr12 143054051 143054228 -732227 + MLT1E2 LTR MaLR 430 549 0 278 208 0 0 chr12 143054322 143054370 -732085 + Charlie8 DNA MER1_type 1370 1417 -1000 412 314 103 10 chr12 143054831 143055025 -731430 - MIR SINE MIR -31 231 20 308 170 19 0 chr12 143055195 143055248 -731207 - L2 LINE L2 0 3272 3219 688 322 159 14 chr12 143055267 143055833 -730622 - L2 LINE L2 0 3272 2622 495 283 37 75 chr12 143056358 143056545 -729910 - MER91B DNA MER1_type -10 180 1 652 168 25 147 chr12 143057834 143057909 -728546 - MER3 DNA MER1_type 0 209 126 1588 158 21 31 chr12 143057909 143058200 -728255 - AluJo SINE Alu -24 288 1 652 168 25 147 chr12 143058200 143058362 -728093 - MER3 DNA MER1_type -83 126 1 883 208 41 5 chr12 143058364 143058561 -727894 - MIR SINE MIR -18 244 41 193 306 35 35 chr12 143058661 143058746 -727709 - L3 LINE CR1 -371 1206 1122 614 287 98 14 chr12 143059706 143059981 -726474 - LTR16C LTR ERVL -3 488 191 594 283 8 35 chr12 143061229 143061425 -725030 - MLT1L LTR MaLR -92 498 313 363 278 53 47 chr12 143061466 143061635 -724820 + MLT1J LTR MaLR 11 180 -331 455 242 39 55 chr12 143061728 143061910 -724545 + MLT1J LTR MaLR 239 417 -94 206 236 36 0 chr12 143062910 143062965 -723490 + CT-rich Low_complexity Low_complexity 5 61 0 328 289 281 20 chr12 143063176 143063574 -722881 + L2 LINE L2 2807 3308 -5 902 245 91 8 chr12 143063789 143064030 -722425 + MIR SINE MIR 2 262 0 792 179 142 23 chr12 143064868 143065006 -721449 - L1MA9 LINE L1 -1 6311 6191 432 67 0 0 chr12 143065006 143065066 -721389 + (TG)n Simple_repeat Simple_repeat 1 60 0 792 179 142 23 chr12 143065066 143065145 -721310 - L1MA9 LINE L1 -121 6191 6068 283 265 51 41 chr12 143065553 143065686 -720769 - MIR SINE MIR -55 207 72 330 83 0 0 chr12 143066014 143066032 -720423 + (T)n Simple_repeat Simple_repeat 1 18 -30 2047 154 0 0 chr12 143066032 143066317 -720138 + AluSx SINE Alu 1 285 -27 330 83 0 0 chr12 143066317 143066346 -720109 + (T)n Simple_repeat Simple_repeat 17 48 0 268 289 96 64 chr12 143066463 143066650 -719805 + MIR SINE MIR 20 212 -50 1191 243 23 13 chr12 143066773 143067073 -719382 - MLT1E LTR MaLR -6 587 285 22 56 0 0 chr12 143067200 143067236 -719219 + AT_rich Low_complexity Low_complexity 1 36 0 276 327 35 9 chr12 143067272 143067385 -719070 - MLT1E LTR MaLR -477 116 1 403 264 138 6 chr12 143067416 143067575 -718880 - MIR SINE MIR -21 241 62 1233 247 26 35 chr12 143067912 143068233 -718222 + MLT1A2 LTR MaLR 1 320 -54 1067 31 78 0 chr12 143068233 143068362 -718093 - MER85 DNA T2_type 0 139 1 1233 247 26 35 chr12 143068362 143068417 -718038 + MLT1A2 LTR MaLR 320 374 0 425 269 123 15 chr12 143068423 143068553 -717902 - MIR SINE MIR -10 252 109 574 278 111 27 chr12 143069026 143069450 -717005 + MLT1J LTR MaLR 30 430 -20 608 286 131 47 chr12 143071456 143071974 -714481 - L2 LINE L2 0 3313 2713 1952 142 3 0 chr12 143071974 143072256 -714199 - AluJo SINE Alu -29 283 1 608 286 131 47 chr12 143072256 143072351 -714104 - L2 LINE L2 -600 2713 2627 521 300 58 47 chr12 143072654 143072997 -713458 + L1MC4a LINE L1 5536 5882 -1926 672 71 0 0 chr12 143073026 143073125 -713330 + (TG)n Simple_repeat Simple_repeat 2 100 0 2669 113 3 0 chr12 143073609 143073972 -712483 - THE1B LTR MaLR 0 364 1 422 318 55 55 chr12 143074114 143074315 -712140 - MIR SINE MIR -60 202 2 530 137 0 78 chr12 143074656 143074758 -711697 + AluSg/x SINE Alu 208 301 -11 503 299 28 23 chr12 143074942 143075119 -711336 + MER5B DNA MER1_type 1 178 0 270 325 25 12 chr12 143075228 143075308 -711147 + MIR SINE MIR 28 108 -154 595 198 9 0 chr12 143075340 143075446 -711009 - MER5B DNA MER1_type -52 126 20 292 327 18 18 chr12 143075838 143075951 -710504 + MIR SINE MIR 22 134 -128 1523 267 78 40 chr12 143076090 143076904 -709551 + L2 LINE L2 2446 3294 -19 422 251 82 75 chr12 143077032 143077287 -709168 - MER102b DNA MER1_type 0 341 85 1412 230 127 25 chr12 143078198 143078632 -707823 + MLT2B1 LTR ERVL 1 478 -42 200 228 18 0 chr12 143078634 143078691 -707764 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 777 161 18 0 chr12 143078710 143078878 -707577 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 839 125 37 13 chr12 143078912 143079360 -707095 + (TCTA)n Simple_repeat Simple_repeat 1 458 0 437 222 6 17 chr12 143079375 143079555 -706900 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 296 126 0 158 chr12 143079569 143079664 -706791 + MLT2D LTR ERVL 354 414 0 230 284 21 11 chr12 143080302 143080395 -706060 + LTR33A LTR ERVL 419 512 -11 412 295 40 12 chr12 143080395 143080568 -705887 + MLT1H LTR MaLR 1 178 -371 1291 185 57 30 chr12 143081549 143081814 -704641 - AluJo SINE Alu -18 294 23 201 395 55 0 chr12 143082309 143082418 -704037 + L2 LINE L2 3158 3272 0 230 278 0 0 chr12 143082938 143082992 -703463 - L2 LINE L2 0 3272 3219 2435 67 11 67 chr12 143083285 143083485 -702970 - THE1C LTR MaLR -21 354 183 2536 65 7 0 chr12 143083485 143083793 -702662 + AluY SINE Alu 1 310 -1 2435 67 11 67 chr12 143083793 143083967 -702488 - THE1C LTR MaLR -192 183 1 340 290 16 113 chr12 143084028 143084214 -702241 - MER5B DNA MER1_type -4 174 7 346 271 121 72 chr12 143084430 143084868 -701587 - LTR33 LTR ERVL -20 503 2 207 0 0 95 chr12 143084893 143084935 -701520 + (CACCC)n Simple_repeat Simple_repeat 2 39 0 206 317 199 5 chr12 143085024 143085210 -701245 - L2 LINE L2 -195 3077 2856 1912 134 0 60 chr12 143085318 143085632 -700823 - AluSx SINE Alu -17 295 1 402 337 51 6 chr12 143086009 143086184 -700271 + L2 LINE L2 3129 3311 -2 489 47 0 0 chr12 143086228 143086292 -700163 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 1870 127 8 11 chr12 143086295 143086563 -699892 - AluSx SINE Alu -39 273 7 328 271 59 25 chr12 143089270 143089388 -697067 - L2 LINE L2 -3 3310 3189 403 150 52 20 chr12 143090406 143090559 -695896 + GA-rich Low_complexity Low_complexity 1 158 0 305 298 79 28 chr12 143090576 143090754 -695701 + L1MEd LINE L1 980 1166 -4953 197 62 0 31 chr12 143090763 143090795 -695660 + (GA)n Simple_repeat Simple_repeat 2 32 0 207 218 0 0 chr12 143091172 143091227 -695228 + (CA)n Simple_repeat Simple_repeat 1 55 0 1674 214 44 0 chr12 143091436 143091830 -694625 + L1MB7 LINE L1 5759 6168 -16 412 268 160 42 chr12 143092180 143092393 -694062 - MIR SINE MIR -11 251 14 370 272 210 36 chr12 143092405 143092600 -693855 + MIR SINE MIR 16 244 -18 346 222 94 77 chr12 143093050 143093167 -693288 - L1ME3A LINE L1 -241 5929 5811 299 269 108 42 chr12 143093218 143093478 -692977 - L1ME3A LINE L1 -321 5800 5524 868 262 11 23 chr12 143093514 143093777 -692678 + MLT2C1 LTR ERVL 15 274 -123 490 109 46 40 chr12 143093838 143094013 -692442 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 214 235 0 20 chr12 143094650 143094701 -691754 - MIR SINE MIR -90 118 69 404 325 75 28 chr12 143094793 143095005 -691450 - MIR SINE MIR -21 241 20 729 226 55 6 chr12 143095652 143095833 -690622 + MER58C DNA MER1_type 26 215 0 300 226 147 0 chr12 143096927 143097029 -689426 + MIR SINE MIR 117 233 -29 1833 124 5 105 chr12 143097138 143097509 -688946 + LTR45B LTR ERV1 3 336 -153 704 222 125 119 chr12 143098039 143098187 -688268 + MLT1J LTR MaLR 1 147 -364 1107 144 11 21 chr12 143098187 143098374 -688081 + MER5A DNA MER1_type 1 185 -4 704 222 125 119 chr12 143098374 143098565 -687890 + MLT1J LTR MaLR 147 346 -165 2412 95 0 0 chr12 143098565 143098871 -687584 + AluSx SINE Alu 1 306 -6 704 222 125 119 chr12 143098871 143099035 -687420 + MLT1J LTR MaLR 346 508 -3 279 243 14 0 chr12 143100195 143100269 -686186 - LTR50 LTR ERVL -717 78 4 1752 217 61 9 chr12 143100403 143100845 -685610 - MLT1C LTR MaLR -2 465 1 575 282 27 72 chr12 143101148 143101410 -685045 - MIR SINE MIR -7 255 6 2479 184 74 0 chr12 143101489 143102001 -684454 - L1MB7 LINE L1 -2 6182 5633 480 259 290 10 chr12 143102935 143103405 -683050 + L2 LINE L2 2696 3312 -1 1798 149 0 30 chr12 143104175 143104470 -681985 - AluJo SINE Alu -21 291 6 307 291 82 33 chr12 143105497 143105740 -680715 + MLT1J2 LTR MaLR 113 405 -45 1880 277 45 31 chr12 143110156 143111019 -675436 - L1ME1 LINE L1 -7 6159 5293 457 252 42 0 chr12 143112006 143112125 -674330 + MIR SINE MIR 4 127 -135 2227 162 80 0 chr12 143112129 143112518 -673937 - MSTB LTR MaLR -4 422 3 1615 105 9 5 chr12 143112547 143112803 -673652 + AluSx SINE Alu 63 319 0 2094 110 19 54 chr12 143112814 143113131 -673324 + AluSx SINE Alu 1 306 -6 1497 238 49 20 chr12 143113154 143113600 -672855 - MLT1C LTR MaLR -3 464 6 1761 161 20 74 chr12 143113961 143114027 -672428 - L1MB8 LINE L1 -6 6172 6104 1644 163 36 11 chr12 143114027 143114303 -672152 - AluJb SINE Alu -29 283 1 1761 161 20 74 chr12 143114303 143114628 -671827 - L1MB8 LINE L1 -74 6104 5802 375 304 75 47 chr12 143114739 143114953 -671502 - MER102b DNA MER1_type -11 330 111 488 261 18 0 chr12 143115109 143115220 -671235 - MER81 DNA DNA -1 113 1 411 246 0 0 chr12 143115438 143115564 -670891 + (CAT)n Simple_repeat Simple_repeat 3 128 0 241 217 33 0 chr12 143315699 143315759 -470696 + MIR SINE MIR 155 216 -46 1477 209 29 71 chr12 143315941 143316004 -470451 - MLT1A2 LTR MaLR 0 374 310 2338 73 0 7 chr12 143316004 143316334 -470121 - AluY SINE Alu 0 328 1 2114 134 0 10 chr12 143316343 143316657 -469798 - AluSx SINE Alu -1 311 1 1477 209 29 71 chr12 143316657 143316964 -469491 - MLT1A2 LTR MaLR -72 302 9 33 0 0 0 chr12 143316999 143317032 -469423 + AT_rich Low_complexity Low_complexity 1 33 0 2231 90 17 3 chr12 143317035 143317325 -469130 - AluSp SINE Alu -19 294 1 1923 145 0 24 chr12 143317332 143317629 -468826 - AluSx SINE Alu -20 292 3 2156 82 4 7 chr12 143317749 143318018 -468437 - AluY SINE Alu -43 268 1 2259 104 7 0 chr12 143318018 143318316 -468139 - AluSq SINE Alu -13 300 1 1780 180 14 0 chr12 143318460 143318755 -467700 + AluJo SINE Alu 1 299 -13 2532 219 92 37 chr12 143318961 143319573 -466882 - L1ME1 LINE L1 -4 6162 5585 2482 59 0 10 chr12 143319573 143319876 -466579 - AluSc SINE Alu -9 300 1 2532 219 92 37 chr12 143319876 143320183 -466272 - L1ME1 LINE L1 -581 5585 5296 2016 119 34 3 chr12 143320183 143320477 -465978 - AluSx SINE Alu -9 303 1 2227 98 0 0 chr12 143320481 143320777 -465678 - AluSg SINE Alu -14 296 1 2365 80 0 7 chr12 143320787 143321087 -465368 - AluY SINE Alu -13 298 1 2532 219 92 37 chr12 143321087 143321248 -465207 - L1ME1 LINE L1 -880 5286 5004 965 239 66 4 chr12 143321247 143321506 -464949 - L1ME1 LINE L1 -1347 4799 4525 * 2451 72 0 7 chr12 143321772 143322077 -464378 + AluSc SINE Alu 1 303 -6 2249 93 30 3 chr12 143322167 143322469 -463986 + AluSg SINE Alu 1 310 0 1518 156 51 0 chr12 143322674 143322930 -463525 - AluJb SINE Alu -35 277 9 2170 114 3 0 chr12 143322989 143323278 -463177 + AluSx SINE Alu 1 290 -22 669 201 8 15 chr12 143323302 143323436 -463019 - FLAM_A SINE Alu 0 133 1 1496 236 23 39 chr12 143323437 143323870 -462585 - L1ME2 LINE L1 -34 6130 5705 1340 192 31 0 chr12 143323868 143324129 -462326 + L1ME LINE L1 5435 5703 -463 * 285 181 24 12 chr12 143324238 143324321 -462134 + (TA)n Simple_repeat Simple_repeat 2 85 0 1733 84 0 27 chr12 143324444 143324669 -461786 - AluSc SINE Alu -22 287 69 784 204 7 7 chr12 143324672 143324843 -461612 - AluJb SINE Alu 0 306 136 2233 234 92 3 chr12 143324924 143325373 -461082 + L1MDa LINE L1 1747 2281 -4259 865 150 0 0 chr12 143325373 143325506 -460949 + FLAM_C SINE Alu 1 133 0 2233 234 92 3 chr12 143325506 143325752 -460703 + L1MDa LINE L1 2281 2504 -4036 442 198 63 24 chr12 143326012 143326138 -460317 + L1PB4 LINE L1 6026 6153 -3 2199 120 0 7 chr12 143326157 143326456 -459999 + AluSx SINE Alu 1 297 -15 282 180 0 0 chr12 143326601 143326662 -459793 + (TA)n Simple_repeat Simple_repeat 1 61 0 1783 142 69 0 chr12 143327842 143328116 -458339 - AluJo SINE Alu -15 297 5 788 162 22 104 chr12 143328160 143328382 -458073 - L1MC2 LINE L1 -5 6339 6136 1334 100 0 11 chr12 143328382 143328562 -457893 - AluSg/x SINE Alu -13 299 122 2083 245 0 2 chr12 143328563 143329048 -457407 - L1M4 LINE L1 -996 5150 4667 1827 155 0 3 chr12 143329089 143329386 -457069 - AluSg SINE Alu -11 299 4 2017 130 10 3 chr12 143330102 143330403 -456052 - AluSx SINE Alu -9 303 1 716 256 42 82 chr12 143330419 143330605 -455850 + LTR23-int LTR ERV1 307 474 -4649 2179 102 3 10 chr12 143330605 143330909 -455546 - AluSx SINE Alu -10 302 1 716 256 42 82 chr12 143330909 143331077 -455378 + LTR23-int LTR ERV1 474 647 -4476 2098 124 10 0 chr12 143331461 143331752 -454703 + AluSq SINE Alu 1 294 -19 308 154 17 120 chr12 143332200 143332317 -454138 + MER83 LTR ERV1 1 105 -343 255 134 98 37 chr12 143332842 143332924 -453531 + L1MCa LINE L1 1191 1277 -5149 390 231 13 0 chr12 143332935 143333012 -453443 + Tigger5 DNA MER2_type 1 78 -2245 457 215 0 0 chr12 143333012 143333091 -453364 - Tigger5 DNA MER2_type -3 2320 2242 435 173 12 12 chr12 143333081 143333162 -453293 + Tigger5 DNA MER2_type 2242 2322 -1 * 697 162 100 38 chr12 143333162 143333556 -452899 + L1MCa LINE L1 1300 1875 -4551 2147 122 0 3 chr12 143333556 143333851 -452604 - AluSx SINE Alu -18 294 1 697 162 100 38 chr12 143333851 143333937 -452518 + L1MCa LINE L1 1875 1954 -4472 772 203 77 11 chr12 143334544 143334726 -451729 - AluJb SINE Alu -33 279 86 466 223 62 0 chr12 143334970 143335082 -451373 - MER58 DNA MER1_type -2156 264 146 2107 114 50 0 chr12 143335945 143336243 -450212 + AluSq SINE Alu 1 313 0 976 77 0 0 chr12 143338951 143339068 -447387 + AluSq SINE Alu 133 249 -64 268 317 248 13 chr12 143339068 143339217 -447238 - L2 LINE L2 -368 2946 2833 2056 136 7 0 chr12 143339217 143339511 -446944 - AluJb SINE Alu -16 296 1 268 317 248 13 chr12 143339511 143339656 -446799 - L2 LINE L2 -481 2833 2723 2007 152 86 37 chr12 143339656 143340018 -446437 + MSTA LTR MaLR 1 387 -41 2640 59 0 0 chr12 143340018 143340325 -446130 - AluY SINE Alu -4 307 1 2007 152 86 37 chr12 143340325 143340370 -446085 + MSTA LTR MaLR 387 428 0 268 317 248 13 chr12 143340370 143340465 -445990 - L2 LINE L2 -591 2723 2464 2055 128 30 0 chr12 143341937 143342235 -444220 + AluSg SINE Alu 2 308 -2 262 188 168 89 chr12 143342587 143342688 -443767 - MLT1J LTR MaLR -160 351 243 1087 214 122 52 chr12 143342901 143343270 -443185 - MSTD LTR MaLR 0 396 2 2257 112 0 0 chr12 143343319 143343622 -442833 + AluSg SINE Alu 1 303 -7 279 294 17 8 chr12 143343918 143344037 -442418 + HAL1 LINE L1 1553 1672 -835 1625 193 7 0 chr12 143344044 143344329 -442126 + AluJo SINE Alu 9 295 -17 2522 56 7 0 chr12 143345267 143345571 -440884 + AluY SINE Alu 1 306 -5 229 196 39 0 chr12 143345604 143345655 -440800 - MLT1G1 LTR MaLR 0 595 543 2186 107 7 0 chr12 143345692 143345983 -440472 + AluSg1 SINE Alu 1 293 -16 267 250 0 16 chr12 143345988 143346052 -440403 - MLT1G1 LTR MaLR -67 488 426 777 217 29 80 chr12 143346136 143346295 -440160 - MLT1G1 LTR MaLR -314 276 181 842 154 0 22 chr12 143346295 143346431 -440024 - FLAM_C SINE Alu 0 133 1 777 217 29 80 chr12 143346431 143346601 -439854 - MLT1G1 LTR MaLR -409 181 4 528 294 48 79 chr12 143346616 143346946 -439509 - MLT1G1-int LTR MaLR -24 1347 1028 180 0 0 0 chr12 143347266 143347286 -439169 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 718 133 19 0 chr12 143347295 143347400 -439055 + FRAM SINE Alu 48 154 -22 481 276 70 58 chr12 143347400 143347914 -438541 - L1MEc LINE L1 -4143 2253 1734 2328 93 0 0 chr12 143348026 143348326 -438129 - AluY SINE Alu -11 300 1 349 222 49 0 chr12 143349047 143349128 -437327 - HAL1 LINE L1 -921 1586 1502 2334 78 3 3 chr12 143349257 143349551 -436904 - AluSc SINE Alu -15 294 1 279 203 31 0 chr12 143349551 143349615 -436840 + MER83 LTR ERV1 383 448 0 21 0 0 0 chr12 143349637 143349658 -436797 + AT_rich Low_complexity Low_complexity 1 21 0 1520 200 36 18 chr12 143349676 143350006 -436449 + LTR24B LTR ERV1 221 556 -20 2182 100 3 31 chr12 143350006 143350325 -436130 - AluSq SINE Alu -3 310 1 2025 96 44 0 chr12 143350337 143350653 -435802 - AluY SINE Alu 0 328 1 2545 39 0 0 chr12 143350690 143350974 -435481 - AluY SINE Alu -27 284 1 454 120 0 13 chr12 143350974 143351049 -435406 + L1M4 LINE L1 5703 5776 -402 * 1460 246 42 14 chr12 143351045 143351479 -434976 + L1MB7 LINE L1 5726 6171 -13 352 278 101 44 chr12 143351506 143351960 -434495 + L1M4 LINE L1 3123 3602 -2544 2362 101 0 0 chr12 143351974 143352282 -434173 + AluSc SINE Alu 1 308 -1 2896 185 48 19 chr12 143352402 143352804 -433651 - L1M4 LINE L1 -3586 2796 2407 2336 88 0 7 chr12 143352804 143353098 -433357 - AluSx SINE Alu -20 292 1 2896 185 48 19 chr12 143353098 143353180 -433275 - L1M4 LINE L1 -3975 2407 2329 2346 112 0 3 chr12 143353180 143353494 -432961 - AluSq SINE Alu 0 313 1 2896 185 48 19 chr12 143353494 143353858 -432597 - L1M4 LINE L1 -4053 2329 1909 940 137 51 63 chr12 143353874 143354021 -432434 - AluJo SINE Alu -16 296 149 7690 70 19 5 chr12 143354021 143355014 -431441 - LTR13 LTR ERVK 0 1007 1 940 137 51 63 chr12 143355014 143355028 -431427 - AluJo SINE Alu -163 149 135 858 137 15 0 chr12 143355028 143355159 -431296 - FLAM_C SINE Alu 0 133 1 940 137 51 63 chr12 143355159 143355171 -431284 - AluJo SINE Alu -177 135 124 2400 173 57 19 chr12 143355171 143355754 -430701 - L1 LINE L1 -2704 4861 4257 * 2630 238 68 43 chr12 143355745 143356307 -430148 - L1 LINE L1 -3831 3734 3187 2222 95 0 17 chr12 143356307 143356601 -429854 + AluSq SINE Alu 1 289 -24 2630 238 68 43 chr12 143356601 143357018 -429437 - L1 LINE L1 -4378 3187 2702 1317 173 26 96 chr12 143357018 143357331 -429124 - AluJb SINE Alu -21 291 1 2630 238 68 43 chr12 143357331 143357460 -428995 - L1 LINE L1 -4863 2702 2578 1696 175 3 10 chr12 143357806 143358097 -428358 - AluJo SINE Alu -23 289 1 206 276 60 9 chr12 143358684 143358800 -427655 - L2 LINE L2 -1208 2106 1985 316 308 8 30 chr12 143359053 143359186 -427269 + GA-rich Low_complexity Low_complexity 3 132 0 574 212 0 17 chr12 143359391 143359509 -426946 - FLAM_C SINE Alu -16 117 2 334 175 0 87 chr12 143359801 143359904 -426551 + LTR37A LTR ERV1 8 101 -325 2485 67 0 13 chr12 143359919 143360231 -426224 + AluY SINE Alu 1 308 -3 786 226 19 0 chr12 143360250 143360409 -426046 - MLT1A1 LTR MaLR 0 365 204 2262 98 3 0 chr12 143360533 143360828 -425627 + AluSg SINE Alu 12 307 -3 1078 97 14 0 chr12 143360969 143361113 -425342 + AluSg/x SINE Alu 157 302 -10 3751 224 56 61 chr12 143361113 143361671 -424784 + L1M4 LINE L1 3335 3894 -2252 1920 123 25 21 chr12 143361671 143361955 -424500 - AluJb SINE Alu -16 296 12 3751 224 56 61 chr12 143361955 143362232 -424223 + L1M4 LINE L1 3894 4171 -1975 1713 146 124 3 chr12 143362232 143362554 -423901 + MER46B DNA MER2_type 1 236 0 3751 224 56 61 chr12 143362554 143362637 -423818 + L1M4 LINE L1 4171 4253 -1893 2257 101 7 7 chr12 143362637 143362944 -423511 + AluSc SINE Alu 1 307 -2 3751 224 56 61 chr12 143362944 143363426 -423029 + L1M4 LINE L1 4253 4736 -1410 1589 166 3 36 chr12 143363426 143363733 -422722 + AluJo SINE Alu 1 297 -15 3751 224 56 61 chr12 143363733 143363745 -422710 + L1M4 LINE L1 4736 4747 -1399 1520 97 0 0 chr12 143363745 143363961 -422494 + AluSg/x SINE Alu 82 297 -15 3751 224 56 61 chr12 143363961 143364097 -422358 + L1M4 LINE L1 4747 4868 -1278 357 365 46 27 chr12 143365887 143366106 -420349 + L1ME LINE L1 2313 2535 -3611 1939 124 115 18 chr12 143366107 143366445 -420010 + LTR8A LTR ERV1 1 371 -356 1936 141 0 7 chr12 143366462 143366767 -419688 + AluJb SINE Alu 1 303 -9 6335 87 30 30 chr12 143366767 143367744 -418711 + L1MA3 LINE L1 5325 6300 -5 1099 161 0 0 chr12 143367744 143367918 -418537 + AluJb SINE Alu 120 293 -19 936 206 19 82 chr12 143367923 143368190 -418265 + L1ME LINE L1 3491 3740 -2406 412 196 49 10 chr12 143368220 143368322 -418133 + L1MA10 LINE L1 6229 6334 0 * 1495 231 72 3 chr12 143368319 143368692 -417763 + L1ME LINE L1 3742 4140 -2006 235 162 0 0 chr12 143368893 143368930 -417525 + L1ME LINE L1 4106 4142 -2004 4535 211 40 30 chr12 143368961 143369300 -417155 + L1ME LINE L1 4106 4440 -1726 2348 78 0 0 chr12 143369300 143369609 -416846 + AluSc SINE Alu 1 309 0 4535 211 40 30 chr12 143369609 143370843 -415612 + L1ME LINE L1 4440 5703 -463 2047 86 7 4 chr12 143370844 143371156 -415299 - AluSx SINE Alu 0 318 6 2335 176 104 45 chr12 143371275 143371364 -415091 - L1MCa LINE L1 -5300 1126 1044 2052 139 0 0 chr12 143371364 143371665 -414790 - AluSx SINE Alu -11 301 1 2335 176 104 45 chr12 143371665 143371798 -414657 - L1MCa LINE L1 -5382 1044 920 2063 96 45 0 chr12 143371798 143372090 -414365 - AluSx SINE Alu -1 311 7 2335 176 104 45 chr12 143372090 143372772 -413683 - L1MCa LINE L1 -5506 920 30 703 269 30 66 chr12 143372946 143373140 -413315 - L1ME3 LINE L1 -335 5827 5648 1174 164 27 27 chr12 143373140 143373359 -413096 - MER20 DNA MER1_type 0 219 1 703 269 30 66 chr12 143373359 143373498 -412957 - L1ME3 LINE L1 -514 5648 5506 450 295 78 60 chr12 143373692 143373960 -412495 - L1MEc LINE L1 -5334 1062 790 2165 100 0 0 chr12 143374002 143374292 -412163 - AluSx SINE Alu -22 290 1 595 294 96 33 chr12 143374869 143375233 -411222 - L1ME3 LINE L1 -1501 4645 4259 261 0 0 0 chr12 143375233 143375262 -411193 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1903 138 91 0 chr12 143375262 143375580 -410875 - LTR47A LTR ERVL -89 363 17 364 146 0 0 chr12 143375580 143375635 -410820 - LTR47A LTR ERVL -381 71 17 355 127 0 0 chr12 143375635 143375690 -410765 - LTR47A LTR ERVL -381 71 17 377 127 0 0 chr12 143375690 143375745 -410710 - LTR47A LTR ERVL -381 71 17 341 146 0 0 chr12 143375745 143375800 -410655 - LTR47A LTR ERVL -381 71 17 483 127 0 0 chr12 143375800 143375871 -410584 - LTR47A LTR ERVL -381 71 1 4125 144 56 57 chr12 143375922 143376498 -409957 - LTR49-int LTR ERV1 -452 6146 5571 2274 98 0 0 chr12 143376498 143376805 -409650 - AluSg SINE Alu -3 307 1 4125 144 56 57 chr12 143376805 143377497 -408958 - LTR49-int LTR ERV1 -1027 5571 4835 405 143 0 0 chr12 143377499 143377555 -408900 - LTR47A LTR ERVL -120 332 277 1874 109 3 14 chr12 143377587 143377895 -408560 - AluY SINE Alu 0 305 1 1718 127 90 0 chr12 143378042 143378310 -408145 - AluSq SINE Alu -21 292 1 1847 126 7 14 chr12 143378579 143378759 -407696 - AluSx SINE Alu 0 314 135 2506 59 0 0 chr12 143378759 143379064 -407391 - AluY SINE Alu -6 305 1 1847 126 7 14 chr12 143379064 143379199 -407256 - AluSx SINE Alu -179 135 1 304 207 122 12 chr12 143379309 143379391 -407064 - HAL1 LINE L1 -85 2422 2332 629 309 113 25 chr12 143380475 143380837 -405618 + L2 LINE L2 2364 2757 -557 296 293 55 50 chr12 143380826 143380953 -405502 + L2 LINE L2 2987 3117 -196 * 2094 129 3 0 chr12 143380953 143381264 -405191 - AluSx SINE Alu 0 312 1 296 293 55 50 chr12 143381264 143381317 -405138 + L2 LINE L2 3117 3168 -145 2384 53 7 0 chr12 143381593 143381893 -404562 - AluY SINE Alu -9 302 1 2213 70 21 0 chr12 143382736 143383023 -403432 + AluSq SINE Alu 1 293 -20 4943 190 36 12 chr12 143383023 143383970 -402485 - MER52A LTR ERV1 0 1755 786 2033 155 155 3 chr12 143383972 143384339 -402116 - MLT2B3 LTR ERVL -131 423 1 388 293 26 17 chr12 143384349 143384465 -401990 - L1M4 LINE L1 -1934 4212 4096 2175 121 0 0 chr12 143384751 143385058 -401397 + AluSx SINE Alu 1 307 -5 229 196 39 0 chr12 143385091 143385142 -401313 - MLT1G1 LTR MaLR 0 595 543 2061 107 7 0 chr12 143385179 143385470 -400985 + AluSg1 SINE Alu 1 293 -16 265 250 0 16 chr12 143385475 143385539 -400916 - MLT1G1 LTR MaLR -67 488 426 783 223 41 79 chr12 143385623 143385782 -400673 - MLT1G1 LTR MaLR -313 282 179 848 154 0 22 chr12 143385782 143385918 -400537 - FLAM_C SINE Alu 0 133 1 783 223 41 79 chr12 143385918 143386088 -400367 - MLT1G1 LTR MaLR -416 179 4 551 293 45 78 chr12 143386103 143386434 -400021 - MLT1G1-int LTR MaLR -24 1347 1028 477 322 74 10 chr12 143387048 143387432 -399023 - MLT1G1-int LTR MaLR -830 541 14 397 294 0 37 chr12 143387456 143387592 -398863 - MLT1G1 LTR MaLR -12 555 425 692 277 63 50 chr12 143387648 143387966 -398489 - MLT1G1 LTR MaLR -273 322 1 640 314 67 43 chr12 143388075 143388495 -397960 - L1M4 LINE L1 -2439 3707 3278 1097 191 116 0 chr12 143388916 143389193 -397262 - L1MD2 LINE L1 0 6359 6051 238 246 79 8 chr12 143389202 143389328 -397127 - L1M4 LINE L1 -1734 4412 4278 1838 153 3 19 chr12 143389329 143389642 -396813 - AluSx SINE Alu -4 308 1 21 81 0 0 chr12 143389822 143389859 -396596 + AT_rich Low_complexity Low_complexity 1 37 0 541 332 59 5 chr12 143390549 143390736 -395719 - HERV16 LTR ERVL -1968 3028 2832 2358 54 0 20 chr12 143390803 143391101 -395354 + AluY SINE Alu 1 292 -19 1537 166 45 0 chr12 143391211 143391500 -394955 - AluJb SINE Alu -2 310 9 1992 111 0 30 chr12 143391559 143391857 -394598 + AluSx SINE Alu 1 289 -23 285 181 24 12 chr12 143391981 143392064 -394391 + (TA)n Simple_repeat Simple_repeat 2 85 0 1259 193 39 0 chr12 143392173 143392432 -394023 - L1ME LINE L1 -463 5703 5435 * 1503 233 23 39 chr12 143392430 143392863 -393592 + L1ME2 LINE L1 5705 6130 -34 671 201 8 15 chr12 143392864 143392998 -393457 + FLAM_A SINE Alu 1 133 0 2205 80 0 0 chr12 143393022 143393308 -393147 - AluSg1 SINE Alu -23 286 1 862 108 69 0 chr12 143393322 143393452 -393003 - MSTD LTR MaLR -257 139 1 1909 125 13 19 chr12 143393517 143393829 -392626 - AluSx SINE Alu -2 310 1 491 228 40 3 chr12 143393836 143394035 -392420 + LTR18A LTR ERVL 96 357 0 2298 89 0 35 chr12 143394035 143394154 -392301 - MLT2A2 LTR ERVL -149 304 182 2304 77 0 7 chr12 143394154 143394453 -392002 - AluSg1 SINE Alu -12 297 1 2298 89 0 35 chr12 143394453 143394648 -391807 - MLT2A2 LTR ERVL -271 182 1 2210 95 0 0 chr12 143394704 143394999 -391456 - AluSq SINE Alu -18 295 1 1887 189 81 13 chr12 143395076 143395234 -391221 + MSTB LTR MaLR 2 148 -278 2403 72 7 0 chr12 143395234 143395541 -390914 - AluY SINE Alu -2 309 1 1887 189 81 13 chr12 143395541 143395779 -390676 + MSTB LTR MaLR 148 425 -1 184 352 56 19 chr12 143395789 143395897 -390558 - MIR SINE MIR -131 131 20 904 178 0 0 chr12 143395921 143396078 -390377 - MER52A LTR ERV1 0 1755 1599 7964 193 46 21 chr12 143396227 143397856 -388599 - MER52A LTR ERV1 -83 1672 4 1968 93 29 51 chr12 143398510 143398822 -387633 + AluSx SINE Alu 1 305 -7 1054 157 186 21 chr12 143398852 143399094 -387361 + AluJb SINE Alu 11 292 -20 21 0 0 0 chr12 143399114 143399135 -387320 + AT_rich Low_complexity Low_complexity 1 21 0 2323 51 0 3 chr12 143399138 143399431 -387024 + AluY SINE Alu 13 304 -7 6736 100 9 20 chr12 143399467 143400431 -386024 - LTR13 LTR ERVK 0 954 1 1566 182 16 19 chr12 143400570 143400708 -385747 + AluJb SINE Alu 1 138 -174 2148 105 0 3 chr12 143400708 143401004 -385451 + AluSx SINE Alu 1 295 -17 1566 182 16 19 chr12 143401004 143401178 -385277 + AluJb SINE Alu 138 312 0 367 261 27 18 chr12 143401200 143401311 -385144 - MLT1K LTR MaLR -30 558 447 746 103 120 8 chr12 143401348 143401465 -384990 + AluSg SINE Alu 2 131 -179 2254 63 0 3 chr12 143401469 143401754 -384701 + AluY SINE Alu 1 284 -27 1905 96 44 0 chr12 143401791 143402107 -384348 + AluY SINE Alu 1 328 0 2061 91 3 29 chr12 143402130 143402438 -384017 + AluSq SINE Alu 11 310 -3 1496 200 36 18 chr12 143402438 143402768 -383687 - LTR24B LTR ERV1 -20 556 221 21 0 0 0 chr12 143402786 143402807 -383648 + AT_rich Low_complexity Low_complexity 1 21 0 2319 143 53 23 chr12 143402829 143402893 -383562 - MER83 LTR ERV1 0 448 387 2240 77 3 3 chr12 143402893 143403191 -383264 + AluSc SINE Alu 1 298 -11 2319 143 53 23 chr12 143403191 143403561 -382894 - MER83 LTR ERV1 -61 387 1 1974 124 10 0 chr12 143404008 143404299 -382156 - AluSq SINE Alu -19 294 1 572 235 36 80 chr12 143404784 143404848 -381607 - LTR23-int LTR ERV1 -4577 546 481 2081 109 3 3 chr12 143404848 143405150 -381305 + AluSx SINE Alu 1 302 -10 572 235 36 80 chr12 143405150 143405336 -381119 - LTR23-int LTR ERV1 -4642 481 307 965 118 7 0 chr12 143405352 143405496 -380959 + AluSq/x SINE Alu 1 145 -167 2270 80 0 3 chr12 143405496 143405795 -380660 + AluSg SINE Alu 1 298 -12 225 356 104 5 chr12 143406417 143406639 -379816 + L1MEd LINE L1 446 689 -5430 2332 67 0 3 chr12 143406686 143406983 -379472 + AluY SINE Alu 3 298 -13 1369 58 0 0 chr12 143406983 143407155 -379300 + AluY SINE Alu 133 304 -7 433 248 47 57 chr12 143407167 143407465 -378990 + L1MEd LINE L1 779 1073 -5046 2194 221 77 8 chr12 143407530 143408140 -378315 + L1M4 LINE L1 4713 5364 -782 2263 97 3 0 chr12 143408148 143408456 -377999 + AluSq SINE Alu 1 309 -4 402 273 64 9 chr12 143408571 143408681 -377774 - MLT1A2 LTR MaLR -254 120 5 1803 145 10 13 chr12 143408716 143409027 -377428 + AluSx SINE Alu 1 310 -2 779 73 0 0 chr12 143409211 143409307 -377148 + AluY SINE Alu 2 97 -214 1948 93 0 4 chr12 143409307 143409576 -376879 + AluY SINE Alu 39 306 -5 628 166 77 59 chr12 143409590 143409759 -376696 - LTR45B LTR ERV1 0 489 318 276 218 254 9 chr12 143409816 143409926 -376529 - LTR45 LTR ERV1 -388 137 1 364 144 30 0 chr12 143410665 143410741 -375714 - Alu SINE Alu -10 292 241 399 352 0 6 chr12 143410741 143410917 -375538 - LOR1-int LTR ERV1 -537 7583 7409 387 0 0 0 chr12 143410993 143411036 -375419 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 69 0 0 chr12 143411037 143411066 -375389 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 276 111 42 0 chr12 143411100 143411172 -375283 + (TA)n Simple_repeat Simple_repeat 1 75 0 1947 148 0 3 chr12 143411172 143411456 -374999 - AluSg SINE Alu -27 283 1 296 231 50 66 chr12 143411529 143411650 -374805 - LOR1-int LTR ERV1 -830 7290 7172 892 139 0 16 chr12 143411665 143411794 -374661 - FLAM_C SINE Alu -6 127 1 29 28 0 0 chr12 143412131 143412167 -374288 + AT_rich Low_complexity Low_complexity 1 36 0 316 324 160 17 chr12 143412167 143412454 -374001 - L1M4 LINE L1 -2230 4618 4291 225 0 0 0 chr12 143413938 143413963 -372492 + (TA)n Simple_repeat Simple_repeat 1 25 0 2838 167 37 50 chr12 143413963 143414557 -371898 - L1MA9 LINE L1 -85 6227 5642 1509 204 109 28 chr12 143414557 143414953 -371502 + MSTC LTR MaLR 1 428 0 692 156 14 14 chr12 143414955 143415096 -371359 + MSTC-int LTR MaLR 2 142 -1593 2507 54 0 3 chr12 143415175 143415470 -370985 - AluSx SINE Alu -18 294 1 261 239 0 15 chr12 143415635 143415702 -370753 + MER72 LTR ERV1 410 475 -247 626 213 16 8 chr12 143415806 143415933 -370522 + LTR45 LTR ERV1 389 516 -9 754 177 6 72 chr12 143415939 143416120 -370335 - L1MA9 LINE L1 -1205 4941 4773 21 0 0 0 chr12 143416506 143416527 -369928 + AT_rich Low_complexity Low_complexity 1 21 0 2138 69 3 10 chr12 143416568 143416858 -369597 + AluY SINE Alu 1 288 -23 332 315 45 110 chr12 143417184 143417629 -368826 - L1M4 LINE L1 -5653 1196 781 260 222 0 0 chr12 143417675 143417720 -368735 - AluJ/monomer SINE Alu -257 45 1 1041 157 13 0 chr12 143418143 143418302 -368153 + FRAM SINE Alu 1 161 -15 322 285 133 31 chr12 143418352 143418608 -367847 - L1M4 LINE L1 -1537 4609 4328 21 36 0 0 chr12 143418800 143418828 -367627 + AT_rich Low_complexity Low_complexity 1 28 0 480 283 116 0 chr12 143419200 143419373 -367082 + MIR SINE MIR 66 258 -4 1998 118 38 3 chr12 143419581 143419870 -366585 - AluSq SINE Alu -14 299 1 337 329 91 43 chr12 143419917 143420008 -366447 + L1M4 LINE L1 2226 2311 -3835 1783 156 6 35 chr12 143420008 143420322 -366133 + AluJo SINE Alu 1 305 -7 337 329 91 43 chr12 143420322 143420604 -365851 + L1M4 LINE L1 2311 2617 -3529 3015 192 74 30 chr12 143421625 143422362 -364093 + Tigger7 DNA MER2_type 1 2587 0 527 240 39 72 chr12 143422490 143422698 -363757 - L1ME3A LINE L1 0 6170 5970 1870 118 51 20 chr12 143422902 143423198 -363257 - AluSx SINE Alu -7 305 1 402 204 21 0 chr12 143423210 143423303 -363152 - L1MC5 LINE L1 -746 7215 7121 227 269 13 13 chr12 143423299 143423377 -363078 - L1MC5 LINE L1 -1138 6823 6746 * 292 206 54 103 chr12 143423372 143423476 -362979 - L1M4 LINE L1 -1753 4393 4300 1950 108 39 46 chr12 143423476 143423781 -362674 - AluSg SINE Alu -7 303 1 292 206 54 103 chr12 143423781 143423860 -362595 - L1M4 LINE L1 -1846 4300 4219 1590 184 0 41 chr12 143423870 143424185 -362270 - AluJo SINE Alu -10 302 1 281 252 80 97 chr12 143424198 143424364 -362091 - L1M4 LINE L1 -2584 3562 3400 2240 88 3 7 chr12 143424364 143424658 -361797 + AluSc SINE Alu 1 293 -16 281 252 80 97 chr12 143424658 143424717 -361738 - L1M4 LINE L1 -2746 3400 3341 * 608 240 88 10 chr12 143424715 143424919 -361536 - L1MB7 LINE L1 -9 6175 5956 2255 106 0 3 chr12 143424919 143425221 -361234 + AluSx SINE Alu 1 301 -11 914 211 0 0 chr12 143425227 143425388 -361067 + FRAM SINE Alu 4 164 -12 435 198 57 162 chr12 143425450 143425784 -360671 - L1MDa LINE L1 -4848 1692 1394 22 0 0 0 chr12 143426123 143426145 -360310 + AT_rich Low_complexity Low_complexity 1 22 0 968 210 0 0 chr12 143426428 143426595 -359860 - AluJb SINE Alu -21 291 125 351 43 106 35 chr12 143426599 143426740 -359715 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 660 184 10 0 chr12 143426750 143426853 -359602 - FLAM_C SINE Alu -34 109 6 1957 145 12 30 chr12 143426969 143427301 -359154 + MER65A LTR ERV1 1 326 -119 650 82 0 0 chr12 143427300 143427385 -359070 - 5S rRNA rRNA -33 88 4 * 744 193 14 0 chr12 143427389 143427529 -358926 + MER65A LTR ERV1 304 445 0 948 250 5 0 chr12 143428110 143428322 -358133 - MIR SINE MIR -25 237 25 204 297 50 0 chr12 143428671 143428772 -357683 + (TTGG)n Simple_repeat Simple_repeat 4 109 0 2052 134 20 10 chr12 143429231 143429537 -356918 - AluSg SINE Alu -1 309 1 707 333 40 33 chr12 143429802 143430231 -356224 - LTR16C LTR ERVL 0 491 60 953 158 29 6 chr12 143430688 143430859 -355596 - AluJo SINE Alu -20 292 118 1627 206 165 30 chr12 143431162 143431653 -354802 - MER68 LTR ERV1 0 562 6 250 310 75 29 chr12 143431678 143431852 -354603 - L2 LINE L2 -16 3297 3116 1403 196 33 101 chr12 143431868 143432102 -354353 - MLT1A2 LTR MaLR -4 370 172 1386 190 68 30 chr12 143432102 143432397 -354058 - AluJb SINE Alu -6 306 1 1403 196 33 101 chr12 143432397 143432559 -353896 - MLT1A2 LTR MaLR -202 172 1 225 364 202 3 chr12 143432611 143432963 -353492 - L2 LINE L2 -338 2976 2555 1795 163 0 10 chr12 143433228 143433516 -352939 + AluJo SINE Alu 9 293 -19 474 256 77 36 chr12 143433516 143433711 -352744 + L2 LINE L2 2338 2540 -774 1112 193 41 41 chr12 143433834 143434149 -352306 + AluJo SINE Alu 1 288 -24 438 175 31 0 chr12 143434410 143434507 -351948 + L1MA7 LINE L1 6192 6291 0 21 0 0 0 chr12 143434507 143434528 -351927 + AT_rich Low_complexity Low_complexity 1 21 0 521 302 62 24 chr12 143435140 143435428 -351027 + L1M4 LINE L1 3538 3836 -2310 1000 202 10 15 chr12 143435579 143435777 -350678 + AluJo SINE Alu 1 197 -115 279 310 87 43 chr12 143435911 143436005 -350450 + L2 LINE L2 3118 3206 -107 2495 81 0 0 chr12 143436005 143436314 -350141 - AluY SINE Alu -2 309 1 279 310 87 43 chr12 143436314 143436403 -350052 + L2 LINE L2 3206 3309 -4 225 0 0 0 chr12 143436648 143436673 -349782 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr12 143439518 143439548 -346907 + AT_rich Low_complexity Low_complexity 1 30 0 1279 107 162 0 chr12 143440151 143440385 -346070 - Tigger5 DNA MER2_type 0 2323 2052 271 268 0 0 chr12 143440383 143440439 -346016 - Tigger5 DNA MER2_type -2267 56 1 * 1622 117 90 77 chr12 143440946 143441245 -345210 + AluSx SINE Alu 1 303 -9 579 250 117 102 chr12 143443118 143443538 -342917 - LTR16A LTR ERVL 0 450 25 336 326 68 29 chr12 143443709 143444120 -342335 - HERV16 LTR ERVL -439 5325 4899 2601 71 0 0 chr12 143444327 143444638 -341817 - AluY SINE Alu 0 311 1 625 270 144 7 chr12 143444681 143445012 -341443 - HERV16 LTR ERVL -2403 2593 2249 673 301 113 39 chr12 143445064 143445198 -341257 - HERV16 LTR ERVL -4582 414 291 2428 115 46 3 chr12 143445198 143445547 -340908 - THE1B LTR MaLR 0 364 1 673 301 113 39 chr12 143445547 143445794 -340661 - HERV16 LTR ERVL -4705 291 5 698 301 107 24 chr12 143445806 143446142 -340313 - LTR16A LTR ERVL -8 442 79 800 33 0 0 chr12 143446161 143446251 -340204 - AluY SINE Alu -218 93 4 231 303 57 41 chr12 143446441 143446563 -339892 - LTR16B LTR ERVL -264 200 77 969 325 53 13 chr12 143446911 143447366 -339089 + HERV16 LTR ERVL 1748 2220 -2776 762 275 28 60 chr12 143447561 143447845 -338610 + HERV16 LTR ERVL 2058 2332 -2664 490 305 97 3 chr12 143447897 143448273 -338182 + HERV16 LTR ERVL 2430 2854 -2142 1805 139 10 24 chr12 143448410 143448704 -337751 + AluJo SINE Alu 1 290 -22 23 54 0 0 chr12 143448745 143448782 -337673 + AT_rich Low_complexity Low_complexity 1 37 0 543 332 59 5 chr12 143449472 143449659 -336796 - HERV16 LTR ERVL -1968 3028 2832 2443 57 0 20 chr12 143449726 143450024 -336431 + AluY SINE Alu 1 292 -19 1626 166 45 0 chr12 143450134 143450423 -336032 - AluJb SINE Alu -2 310 9 2116 110 3 7 chr12 143450482 143450773 -335682 + AluSx SINE Alu 1 290 -22 724 201 8 15 chr12 143450797 143450931 -335524 - FLAM_A SINE Alu 0 133 1 1536 233 23 39 chr12 143450932 143451365 -335090 - L1ME2 LINE L1 -34 6130 5705 1341 189 35 0 chr12 143451363 143451623 -334832 + L1ME LINE L1 5435 5703 -463 * 241 183 37 12 chr12 143451732 143451814 -334641 + (TA)n Simple_repeat Simple_repeat 2 85 0 2285 81 3 17 chr12 143451938 143452233 -334222 - AluSp SINE Alu -22 291 1 1829 158 18 4 chr12 143452246 143452524 -333931 - AluJo SINE Alu -30 282 1 1912 144 11 0 chr12 143452666 143452950 -333505 + AluJo SINE Alu 10 296 -16 282 180 0 0 chr12 143453287 143453348 -333107 + (TA)n Simple_repeat Simple_repeat 2 62 0 2179 120 0 7 chr12 143453493 143453792 -332663 - AluSx SINE Alu -15 297 1 445 198 63 24 chr12 143453811 143453937 -332518 - L1PB4 LINE L1 -3 6153 6026 2302 236 89 3 chr12 143454197 143454445 -332010 - L1MDa LINE L1 -4036 2504 2279 908 145 0 0 chr12 143454445 143454576 -331879 - FLAM_C SINE Alu -2 131 1 2302 236 89 3 chr12 143454576 143455025 -331430 - L1MDa LINE L1 -4261 2279 1747 845 204 7 7 chr12 143455106 143455277 -331178 + AluJb SINE Alu 136 306 0 1793 92 0 0 chr12 143455288 143455516 -330939 + AluSc SINE Alu 77 304 -5 417 245 0 0 chr12 143455589 143455687 -330768 + L1M4 LINE L1 4739 4836 -1310 2193 110 3 3 chr12 143455819 143456118 -330337 + AluSq SINE Alu 1 299 -14 817 224 0 6 chr12 143456118 143456279 -330176 + AluSg/x SINE Alu 132 291 -19 326 315 157 0 chr12 143456615 143456723 -329732 - L2 LINE L2 0 3272 3148 375 339 60 28 chr12 143457010 143457258 -329197 - L2 LINE L2 -440 2874 2619 2508 75 0 0 chr12 143457578 143457873 -328582 - AluSg SINE Alu -15 295 1 184 263 13 40 chr12 143458279 143458355 -328100 + L2 LINE L2 3161 3234 -38 248 118 0 0 chr12 143458701 143458735 -327720 + MER41B LTR ERV1 3 36 -599 2250 117 7 0 chr12 143458751 143459058 -327397 - AluSg SINE Alu -1 309 1 2238 113 0 16 chr12 143459062 143459371 -327084 - AluSx SINE Alu -7 305 2 1463 118 13 4 chr12 143459371 143459600 -326855 + MER41A LTR ERV1 25 255 -299 3455 100 84 2 chr12 143459600 143460112 -326343 + MER41A LTR ERV1 1 554 0 246 32 0 0 chr12 143461479 143461510 -324945 + (TA)n Simple_repeat Simple_repeat 2 32 0 501 144 77 58 chr12 143461512 143461616 -324839 - FRAM SINE Alu -14 162 57 905 189 57 0 chr12 143461968 143462127 -324328 + MER5A DNA MER1_type 1 168 -21 212 292 104 21 chr12 143462121 143462217 -324238 - L2 LINE L2 -37 3276 3173 * 302 284 11 0 chr12 143462779 143462867 -323588 - Charlie8 DNA MER1_type -2159 258 170 2367 78 0 3 chr12 143463817 143464112 -322343 + AluY SINE Alu 2 295 -16 1111 142 6 17 chr12 143465164 143465340 -321115 - AluSc SINE Alu -15 294 121 659 85 19 38 chr12 143465412 143465518 -320937 - AluSg SINE Alu -205 105 2 305 303 69 21 chr12 143465589 143465734 -320721 - L1ME3A LINE L1 -8 6556 6405 1763 191 0 7 chr12 143465930 143466213 -320242 + AluJo SINE Alu 1 281 -31 841 267 123 28 chr12 143466259 143467168 -319287 - L1ME3A LINE L1 -371 6193 5196 415 363 88 11 chr12 143467274 143467627 -318828 - L2 LINE L2 -668 2646 2267 401 178 53 171 chr12 143467605 143467713 -318742 - MER5A DNA MER1_type -23 166 79 * 540 170 0 20 chr12 143467713 143467813 -318642 - HY3 scRNA scRNA -3 98 1 401 178 53 171 chr12 143467813 143467856 -318599 - MER5A DNA MER1_type -110 79 33 2300 107 10 0 chr12 143468046 143468346 -318109 + AluSx SINE Alu 1 303 -9 215 61 30 0 chr12 143468346 143468379 -318076 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 2853 116 66 23 chr12 143468411 143468928 -317527 - L1MC1 LINE L1 -267 6066 5528 2568 243 46 31 chr12 143468946 143469413 -317042 - L1ME3A LINE L1 -2180 4360 3902 2056 152 0 3 chr12 143469413 143469710 -316745 - AluJb SINE Alu -16 296 1 2568 243 46 31 chr12 143469710 143470050 -316405 - L1ME3A LINE L1 -2638 3902 3569 2163 122 7 0 chr12 143470050 143470345 -316110 - AluSq SINE Alu -16 297 1 1645 190 3 14 chr12 143470347 143470637 -315818 - AluJo SINE Alu -23 289 3 2568 243 46 31 chr12 143470637 143470731 -315724 - L1ME3A LINE L1 -2971 3569 3441 3808 199 26 65 chr12 143470732 143471741 -314714 - LTR5 LTR ERVK 0 969 1 9904 178 8 11 chr12 143471741 143473622 -312833 - HERVK LTR ERVK 0 7243 5533 1857 97 0 11 chr12 143473700 143473979 -312476 - HERVK LTR ERVK -1782 5461 5186 192 77 0 0 chr12 143473983 143474009 -312446 + (TC)n Simple_repeat Simple_repeat 1 26 0 293 254 0 32 chr12 143474014 143474140 -312315 + (TCTCTG)n Simple_repeat Simple_repeat 4 125 0 3839 169 6 7 chr12 143474173 143474858 -311597 - HERVK LTR ERVK -3554 3689 3006 4037 145 27 7 chr12 143474969 143475667 -310788 - HERVK LTR ERVK -6531 712 1 3724 204 27 65 chr12 143475667 143476674 -309781 - LTR5 LTR ERVK 0 969 1 2343 239 61 19 chr12 143476683 143477534 -308921 - L1MDa LINE L1 -3113 3427 2541 679 228 19 13 chr12 143477543 143477557 -308898 - AluJo/FRAM SINE Alu -1 311 299 2396 94 0 0 chr12 143477557 143477854 -308601 + AluY SINE Alu 1 297 -14 679 228 19 13 chr12 143477854 143477997 -308458 - AluJo/FRAM SINE Alu -13 299 153 1867 139 17 3 chr12 143478178 143478465 -307990 - AluSc SINE Alu -18 291 1 2692 33 0 3 chr12 143478720 143479025 -307430 + AluY SINE Alu 1 304 -7 489 245 7 26 chr12 143479048 143479199 -307256 + LTR7 LTR ERV1 303 450 0 920 188 5 55 chr12 143479233 143479435 -307020 + AluJo SINE Alu 121 312 0 234 173 27 53 chr12 143479904 143479979 -306476 + G-rich Low_complexity Low_complexity 5 77 0 1660 228 98 60 chr12 143480302 143480915 -305540 + MER92B LTR ERV1 1 636 0 242 213 0 13 chr12 143481476 143481551 -304904 + C-rich Low_complexity Low_complexity 1 74 0 180 179 0 0 chr12 143481577 143481616 -304839 + C-rich Low_complexity Low_complexity 1 39 0 2278 108 0 0 chr12 143482231 143482527 -303928 + AluSc SINE Alu 1 296 -13 365 311 162 40 chr12 143483205 143483480 -302975 + L2 LINE L2 2816 3163 -150 2168 90 40 13 chr12 143483480 143483779 -302676 - AluSq SINE Alu -6 307 1 365 311 162 40 chr12 143483779 143483930 -302525 + L2 LINE L2 3163 3294 -19 574 160 0 43 chr12 143483959 143484147 -302308 + (TG)n Simple_repeat Simple_repeat 1 180 0 200 231 17 17 chr12 143484171 143484288 -302167 + (TG)n Simple_repeat Simple_repeat 2 118 0 369 244 6 12 chr12 143484341 143484509 -301946 + (TG)n Simple_repeat Simple_repeat 1 167 0 478 210 0 32 chr12 143484542 143484728 -301727 + (TG)n Simple_repeat Simple_repeat 1 180 0 233 263 6 17 chr12 143484744 143484923 -301532 + (TG)n Simple_repeat Simple_repeat 1 177 0 277 244 7 7 chr12 143484979 143485114 -301341 + (TG)n Simple_repeat Simple_repeat 1 135 0 291 255 10 20 chr12 143485127 143485225 -301230 + (TG)n Simple_repeat Simple_repeat 1 97 0 324 222 0 20 chr12 143485236 143485389 -301066 + (TG)n Simple_repeat Simple_repeat 1 150 0 453 261 0 0 chr12 143485406 143485586 -300869 + (TG)n Simple_repeat Simple_repeat 1 180 0 3672 108 14 27 chr12 143486383 143486938 -299517 - LTR14 LTR ERVK 0 548 1 692 67 0 0 chr12 143488092 143488181 -298274 + AluSp/q SINE Alu 209 297 -16 393 156 94 0 chr12 143488243 143488339 -298116 - MER67C LTR ERV1 -2 708 604 1964 153 0 7 chr12 143488341 143488636 -297819 + AluJb SINE Alu 1 293 -19 2436 91 0 7 chr12 143488639 143488948 -297507 + AluSq SINE Alu 1 307 -6 1821 100 96 0 chr12 143490690 143490939 -295516 + AluSx SINE Alu 1 273 -39 424 143 0 0 chr12 143491673 143491743 -294712 + Alu SINE Alu 237 306 -5 2377 164 31 2 chr12 143491743 143492158 -294297 - MER41C LTR ERV1 -127 427 1 1358 221 136 40 chr12 143492158 143492572 -293883 - MER76 LTR ERV -194 494 32 2402 83 13 3 chr12 143492572 143492873 -293582 - AluY SINE Alu -7 304 1 1358 221 136 40 chr12 143492873 143492907 -293548 - MER76 LTR ERV -656 32 3 2115 230 102 36 chr12 143493157 143493906 -292549 - HERVL68 LTR ERVL -204 2833 2036 1335 169 58 15 chr12 143494943 143495203 -291252 + L1PA16 LINE L1 5887 6157 -9 650 241 0 0 chr12 143495474 143495615 -290840 - MER76 LTR ERV -547 141 1 528 285 70 5 chr12 143495615 143495801 -290654 - L1ME1 LINE L1 -61 6105 5908 232 147 0 0 chr12 143495804 143495838 -290617 + AluSx SINE Alu 1 34 -268 4433 121 17 124 chr12 143495838 143497383 -289072 - pTR5 LTR ERV1 0 2606 1524 2177 96 0 0 chr12 143497383 143497663 -288792 + AluSx SINE Alu 31 310 -2 2098 207 71 47 chr12 143497663 143497674 -288781 - L1MD3 LINE L1 -745 5384 5375 2306 75 0 0 chr12 143497674 143497982 -288473 + AluY SINE Alu 1 308 0 2098 207 71 47 chr12 143497982 143498417 -288038 - L1MD3 LINE L1 -754 5375 4952 291 28 0 0 chr12 143498417 143498453 -288002 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 207 71 47 chr12 143498453 143498568 -287887 - L1MD3 LINE L1 -1177 4952 4841 2464 97 0 0 chr12 143498568 143498877 -287578 - AluSq SINE Alu -4 309 1 2098 207 71 47 chr12 143498877 143499495 -286960 - L1MD3 LINE L1 -1288 4841 4696 435 255 44 54 chr12 143499560 143499858 -286597 - L1MD3 LINE L1 -5046 1073 779 1432 63 0 37 chr12 143499870 143500042 -286413 - AluY SINE Alu -7 304 138 2493 67 0 3 chr12 143500042 143500341 -286114 - AluY SINE Alu -11 300 3 1432 63 0 37 chr12 143500341 143500357 -286098 - AluY SINE Alu -173 138 123 422 330 133 44 chr12 143500432 143500868 -285587 - L1MD3 LINE L1 -5488 631 157 2237 121 3 0 chr12 143501231 143501528 -284927 - AluSx SINE Alu -12 300 3 1996 114 31 7 chr12 143501635 143501826 -284629 - AluSx SINE Alu 0 312 119 237 65 0 0 chr12 143501826 143501857 -284598 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 114 31 7 chr12 143501857 143501979 -284476 - AluSx SINE Alu -193 119 1 21 0 0 0 chr12 143502224 143502245 -284210 + AT_rich Low_complexity Low_complexity 1 21 0 1173 226 171 38 chr12 143502248 143502726 -283729 - MLT1F LTR MaLR 0 542 1 1082 197 52 100 chr12 143503700 143504009 -282446 + AluJo SINE Alu 1 294 -8 1427 150 41 34 chr12 143504767 143505033 -281422 - AluJb SINE Alu -23 289 22 428 248 210 19 chr12 143505429 143505586 -280869 - L2 LINE L2 -22 3291 3105 1378 197 11 11 chr12 143505630 143505909 -280546 + AluJo SINE Alu 11 289 -23 2146 82 0 0 chr12 143505988 143506289 -280166 - AluSc SINE Alu 0 301 1 211 326 124 0 chr12 143506397 143506526 -279929 + L2 LINE L2 2329 2473 -841 1387 152 86 0 chr12 143506559 143506828 -279627 - AluJb SINE Alu -20 292 1 1311 201 10 28 chr12 143506905 143507227 -279228 - AluJo SINE Alu 0 317 1 2188 97 0 0 chr12 143507999 143508287 -278168 + AluSc SINE Alu 1 288 -21 2214 91 0 0 chr12 143508290 143508576 -277879 + AluSc SINE Alu 1 286 -23 2089 256 84 30 chr12 143511137 143512817 -273638 + L1MD2 LINE L1 34 1940 -4456 381 259 168 32 chr12 143513175 143513360 -273095 + LTR33 LTR ERVL 292 501 -20 214 253 160 13 chr12 143513551 143513626 -272829 - L3b LINE CR1 -271 1312 1227 1527 156 16 52 chr12 143514685 143514827 -271628 + AluJo SINE Alu 3 149 -163 2009 123 0 0 chr12 143514827 143515119 -271336 + AluSq SINE Alu 1 292 -21 1527 156 16 52 chr12 143515119 143515284 -271171 + AluJo SINE Alu 149 299 -13 2369 68 0 0 chr12 143515515 143515811 -270644 + AluY SINE Alu 1 296 -15 2021 116 7 0 chr12 143515817 143516111 -270344 + AluSg SINE Alu 2 297 -13 2467 55 0 13 chr12 143516265 143516574 -269881 + AluY SINE Alu 1 305 -6 666 171 0 47 chr12 143516584 143516713 -269742 + FLAM_C SINE Alu 2 124 -19 1779 134 7 33 chr12 143517068 143517375 -269080 + AluSx SINE Alu 1 299 -13 793 166 145 128 chr12 143518050 143518166 -268289 + AluJo SINE Alu 2 115 -187 2200 107 0 3 chr12 143518166 143518466 -267989 - AluSx SINE Alu -13 299 1 793 166 145 128 chr12 143518466 143518498 -267957 + AluJo SINE Alu 115 145 -157 2006 126 7 0 chr12 143518498 143518792 -267663 + AluSg SINE Alu 1 296 -14 793 166 145 128 chr12 143518792 143518938 -267517 + AluJo SINE Alu 145 302 0 2067 86 0 17 chr12 143518964 143519254 -267201 + AluY SINE Alu 1 285 -26 243 0 0 0 chr12 143519254 143519281 -267174 + (CA)n Simple_repeat Simple_repeat 2 28 0 1633 235 47 60 chr12 143519296 143520108 -266347 + L1MD2 LINE L1 3080 3931 -2284 2183 110 0 3 chr12 143520125 143520424 -266031 + AluSc SINE Alu 1 298 -11 2316 157 56 173 chr12 143520425 143520597 -265858 + L1MD2 LINE L1 5383 5573 -855 810 134 0 0 chr12 143520597 143520716 -265739 + AluY SINE Alu 178 296 -15 2190 91 7 0 chr12 143520726 143521022 -265433 + AluSg1 SINE Alu 1 298 -11 2316 157 56 173 chr12 143521022 143521536 -264919 + L1MD2 LINE L1 5583 6103 -325 1962 235 42 19 chr12 143521528 143522120 -264335 + L1MEc LINE L1 4506 5111 -1104 * 2095 110 7 7 chr12 143522371 143522672 -263783 + AluSq SINE Alu 2 302 -11 2207 90 0 3 chr12 143522676 143522976 -263479 + AluSp SINE Alu 1 299 -14 540 255 122 59 chr12 143523093 143523219 -263236 + L1MEc LINE L1 2120 2237 -4159 2451 69 0 0 chr12 143523219 143523524 -262931 - AluY SINE Alu -6 305 1 540 255 122 59 chr12 143523524 143523668 -262787 + L1MEc LINE L1 2237 2407 -3989 501 313 69 24 chr12 143523677 143523923 -262532 + L1MEc LINE L1 2404 2660 -3555 680 86 32 0 chr12 143523933 143524026 -262429 + THE1B LTR MaLR 1 96 -268 2044 130 23 34 chr12 143524026 143524380 -262075 + THE1A LTR MaLR 6 355 0 526 294 143 26 chr12 143524438 143524682 -261773 + L1MEc LINE L1 3022 3301 -2914 2027 120 0 3 chr12 143524682 143524982 -261473 + AluSg SINE Alu 1 299 -11 526 294 143 26 chr12 143524982 143525002 -261453 + L1MEc LINE L1 3301 3317 -2898 2157 242 0 0 chr12 143525023 143525507 -260948 + L1M4 LINE L1 4667 5150 -996 1139 123 0 11 chr12 143525508 143525687 -260768 + AluSp SINE Alu 122 298 -15 2180 74 0 55 chr12 143525688 143526000 -260455 + AluSg SINE Alu 1 295 -15 772 189 9 90 chr12 143526000 143526222 -260233 + L1MC2 LINE L1 6136 6339 -5 1674 142 69 0 chr12 143526266 143526540 -259915 + AluJo SINE Alu 5 297 -15 1820 62 78 88 chr12 143527944 143528250 -258205 + AluSg SINE Alu 1 303 -7 1547 69 5 0 chr12 143528251 143528454 -258001 + L1PA7 LINE L1 5950 6153 -1 1645 150 0 0 chr12 143529077 143529344 -257111 - AluJo SINE Alu -44 268 2 819 154 62 0 chr12 143529866 143530028 -256427 + FRAM SINE Alu 1 171 -5 322 278 192 0 chr12 143530083 143530317 -256138 - L1M4 LINE L1 -1392 4754 4476 203 122 0 24 chr12 143530338 143530379 -256076 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1313 186 7 11 chr12 143530379 143530664 -255791 - AluSx SINE Alu -28 284 1 1165 96 0 0 chr12 143531245 143531401 -255054 - AluSg1 SINE Alu -153 156 1 2328 55 0 3 chr12 143531417 143531710 -254745 - AluY SINE Alu 0 311 20 1806 104 26 0 chr12 143531710 143531979 -254476 - L1M1 LINE L1 -523 5781 5506 2202 107 0 3 chr12 143532389 143532699 -253756 + AluSc SINE Alu 1 309 0 2136 100 0 10 chr12 143532729 143533029 -253426 + AluSx SINE Alu 1 297 -15 430 134 0 0 chr12 143533052 143533119 -253336 + MER41B LTR ERV1 481 547 -88 198 0 0 0 chr12 143533121 143533143 -253312 + (A)n Simple_repeat Simple_repeat 1 22 0 1298 96 0 14 chr12 143533147 143533387 -253068 + AluSx SINE Alu 27 298 -14 2186 103 3 0 chr12 143533388 143533690 -252765 + AluSp SINE Alu 1 303 -10 1960 102 3 11 chr12 143533745 143534029 -252426 - AluSc SINE Alu -13 296 15 1947 119 0 7 chr12 143534176 143534486 -251969 + AluSx SINE Alu 1 308 0 1716 131 10 24 chr12 143534489 143534780 -251675 - AluJb SINE Alu -11 301 15 1618 133 8 0 chr12 143534789 143535030 -251425 + HERVL LTR ERVL 3051 3293 -2361 1009 200 0 16 chr12 143535625 143535810 -250645 + HERVL LTR ERVL 3321 3502 -2262 865 234 0 12 chr12 143536212 143536379 -250076 + MER41D LTR ERV1 393 557 0 596 182 10 0 chr12 143536383 143536482 -249973 + HERVL LTR ERVL 4511 4610 -1154 902 162 14 0 chr12 143536656 143536798 -249657 - MER4E LTR ERV1 0 779 636 1732 88 0 17 chr12 143536798 143537037 -249418 - AluSg1 SINE Alu -16 293 59 3470 60 4 11 chr12 143537039 143537490 -248965 - LTR7 LTR ERV1 -2 448 1 8298 84 7 10 chr12 143537490 143538607 -247848 - HERVH LTR ERV1 0 7713 6600 514 125 12 0 chr12 143538607 143538687 -247768 - HERVH LTR ERV1 -1033 6680 6600 525 113 12 0 chr12 143538687 143538767 -247688 - HERVH LTR ERV1 -1033 6680 6600 514 148 0 0 chr12 143538767 143538848 -247607 - HERVH LTR ERV1 -1033 6680 6600 514 161 0 0 chr12 143538848 143538929 -247526 - HERVH LTR ERV1 -1033 6680 6600 517 148 0 0 chr12 143538929 143539010 -247445 - HERVH LTR ERV1 -1033 6680 6600 482 150 12 0 chr12 143539010 143539090 -247365 - HERVH LTR ERV1 -1033 6680 6600 549 123 0 0 chr12 143539090 143539171 -247284 - HERVH LTR ERV1 -1033 6680 6600 531 148 0 0 chr12 143539171 143539252 -247203 - HERVH LTR ERV1 -1033 6680 6600 449 175 12 0 chr12 143539252 143539332 -247123 - HERVH LTR ERV1 -1033 6680 6600 520 136 0 0 chr12 143539332 143539413 -247042 - HERVH LTR ERV1 -1033 6680 6600 507 161 0 0 chr12 143539413 143539494 -246961 - HERVH LTR ERV1 -1033 6680 6600 509 161 0 0 chr12 143539494 143539575 -246880 - HERVH LTR ERV1 -1033 6680 6600 521 136 0 0 chr12 143539575 143539656 -246799 - HERVH LTR ERV1 -1033 6680 6600 438 188 12 0 chr12 143539656 143539736 -246719 - HERVH LTR ERV1 -1033 6680 6600 498 161 0 0 chr12 143539736 143539817 -246638 - HERVH LTR ERV1 -1033 6680 6600 525 148 0 0 chr12 143539817 143539898 -246557 - HERVH LTR ERV1 -1033 6680 6600 524 136 0 0 chr12 143539898 143539979 -246476 - HERVH LTR ERV1 -1033 6680 6600 416 192 13 0 chr12 143539981 143540059 -246396 - HERVH LTR ERV1 -1035 6678 6600 529 136 0 0 chr12 143540059 143540140 -246315 - HERVH LTR ERV1 -1033 6680 6600 534 136 0 0 chr12 143540140 143540221 -246234 - HERVH LTR ERV1 -1033 6680 6600 534 136 0 0 chr12 143540221 143540302 -246153 - HERVH LTR ERV1 -1033 6680 6600 524 136 0 0 chr12 143540302 143540383 -246072 - HERVH LTR ERV1 -1033 6680 6600 416 192 13 0 chr12 143540385 143540463 -245992 - HERVH LTR ERV1 -1035 6678 6600 3073 78 0 0 chr12 143540463 143540861 -245594 - HERVH LTR ERV1 -1033 6680 6283 * 15966 167 22 34 chr12 143540855 143541023 -245432 - HERVH LTR ERV1 -2372 4157 3988 2408 81 3 0 chr12 143541023 143541332 -245123 + AluSp SINE Alu 2 311 -2 15966 167 22 34 chr12 143541332 143545567 -240888 - HERVH LTR ERV1 -2541 3988 1 3348 76 0 24 chr12 143545569 143546028 -240427 - LTR7 LTR ERV1 -2 448 1 463 97 0 0 chr12 143546028 143546090 -240365 - Alu SINE Alu -255 63 2 3023 159 105 10 chr12 143546114 143546230 -240225 - MER4D LTR ERV1 -247 656 552 1328 154 95 21 chr12 143546230 143546515 -239940 - AluJb SINE Alu -6 306 1 3023 159 105 10 chr12 143546515 143546997 -239458 - MER4D LTR ERV1 -351 552 1 195 186 0 0 chr12 143547022 143547065 -239390 + (TA)n Simple_repeat Simple_repeat 1 43 0 611 167 125 0 chr12 143547089 143547209 -239246 - AluJo SINE Alu -175 137 3 210 226 30 61 chr12 143547978 143548142 -238313 + G-rich Low_complexity Low_complexity 5 163 0 220 196 0 20 chr12 143548330 143548381 -238074 + G-rich Low_complexity Low_complexity 4 53 0 865 224 73 15 chr12 143548603 143548862 -237593 + L1M4 LINE L1 2777 3050 -3096 21 0 0 0 chr12 143548874 143548895 -237560 + AT_rich Low_complexity Low_complexity 1 21 0 1869 146 7 3 chr12 143549200 143549509 -236946 - AluSx SINE Alu -2 310 1 1433 116 0 0 chr12 143549800 143550015 -236440 - AluSg SINE Alu -95 215 1 1917 71 0 4 chr12 143550025 143550278 -236177 - AluY SINE Alu -13 298 47 2081 117 0 0 chr12 143550374 143550673 -235782 - AluSg SINE Alu -11 299 1 2418 61 0 0 chr12 143550760 143551057 -235398 + AluY SINE Alu 1 297 -14 1832 159 60 0 chr12 143551450 143551765 -234690 - MER7A DNA MER2_type 0 346 15 2116 111 7 0 chr12 143551769 143552067 -234388 + AluSp SINE Alu 3 302 -11 950 176 97 5 chr12 143552337 143552553 -233902 - MER46A DNA MER2_type 0 236 1 342 267 149 32 chr12 143552565 143552661 -233794 - L1ME4a LINE L1 -140 5981 5898 2141 110 7 3 chr12 143552661 143552969 -233486 - AluSx SINE Alu -3 309 1 342 267 149 32 chr12 143552969 143553187 -233268 - L1ME4a LINE L1 -223 5898 5630 1799 116 67 3 chr12 143553218 143553502 -232953 - AluSx SINE Alu -10 302 1 1019 184 33 14 chr12 143554616 143554828 -231627 - MLT1D LTR MaLR -5 500 285 284 343 0 0 chr12 143554932 143555034 -231421 - L2 LINE L2 -518 2796 2695 334 212 15 0 chr12 143555378 143555444 -231011 - Tigger2 DNA MER2_type -2650 68 2 479 289 108 6 chr12 143555478 143555644 -230811 + MER58A DNA MER1_type 40 222 -2 2253 98 0 0 chr12 143557077 143557372 -229083 - AluSp SINE Alu -18 295 1 28 0 0 0 chr12 143557377 143557405 -229050 + AT_rich Low_complexity Low_complexity 1 28 0 2000 108 0 14 chr12 143557405 143557692 -228763 - AluSq SINE Alu -30 283 1 834 123 0 0 chr12 143558187 143558309 -228146 - AluSg/x SINE Alu -15 295 174 2140 79 0 44 chr12 143558310 143558480 -227975 - AluSq SINE Alu -10 303 127 243 0 0 0 chr12 143558480 143558507 -227948 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2257 71 0 0 chr12 143558507 143558790 -227665 - AluY SINE Alu -27 284 2 2140 79 0 44 chr12 143558790 143558935 -227520 - AluSq SINE Alu -184 129 1 570 216 18 114 chr12 143559450 143559677 -226778 - L1MB8 LINE L1 -3 6175 5971 233 194 0 32 chr12 143559654 143559716 -226739 - L1MB8 LINE L1 -148 6030 5971 * 233 194 0 32 chr12 143559693 143559755 -226700 - L1MB8 LINE L1 -148 6030 5971 233 194 0 32 chr12 143559732 143559794 -226661 - L1MB8 LINE L1 -148 6030 5971 233 194 0 32 chr12 143559771 143559833 -226622 - L1MB8 LINE L1 -148 6030 5971 * 248 177 0 32 chr12 143559810 143559872 -226583 - L1MB8 LINE L1 -148 6030 5971 241 164 0 36 chr12 143559856 143559911 -226544 - L1MB8 LINE L1 -155 6023 5971 * 233 194 0 32 chr12 143559966 143560028 -226427 - L1MB8 LINE L1 -148 6030 5971 233 194 0 32 chr12 143560005 143560067 -226388 - L1MB8 LINE L1 -148 6030 5971 * 510 197 43 0 chr12 143560044 143560161 -226294 - L1MB7 LINE L1 -154 6030 5909 1307 66 0 0 chr12 143560165 143560331 -226124 - AluY SINE Alu -13 298 133 2274 65 6 40 chr12 143560331 143560652 -225803 - AluY SINE Alu -1 310 1 301 130 0 0 chr12 143560652 143560698 -225757 - L1MB7 LINE L1 -285 5893 5848 21 0 0 0 chr12 143560887 143560908 -225547 + AT_rich Low_complexity Low_complexity 1 21 0 1474 84 47 14 chr12 143561808 143562021 -224434 - AluSg/x SINE Alu -10 300 81 1900 144 0 44 chr12 143562890 143563210 -223245 + AluJb SINE Alu 3 308 -4 1742 109 20 61 chr12 143563210 143563504 -222951 + AluSx SINE Alu 22 303 -9 22 56 0 0 chr12 143564033 143564069 -222386 + AT_rich Low_complexity Low_complexity 1 36 0 2179 116 3 0 chr12 143564074 143564385 -222070 + AluSx SINE Alu 1 312 0 186 268 0 0 chr12 143564444 143564485 -221970 - L2 LINE L2 -21 3292 3252 1683 150 4 18 chr12 143564814 143565094 -221361 + AluJo SINE Alu 17 292 -20 1994 132 10 0 chr12 143565326 143565636 -220819 - AluSq SINE Alu 0 313 1 2085 62 0 0 chr12 143566013 143566270 -220185 + AluY SINE Alu 51 307 -4 2062 85 39 3 chr12 143566279 143566561 -219894 + AluY SINE Alu 1 292 -19 1369 169 4 43 chr12 143566594 143566849 -219606 - AluJo SINE Alu -67 245 1 2233 97 0 7 chr12 143566860 143567170 -219285 - AluSq SINE Alu -5 308 1 738 206 16 0 chr12 143567979 143568105 -218350 + AluJo/FLAM SINE Alu 1 128 -174 2151 127 0 0 chr12 143568108 143568415 -218040 + AluSq SINE Alu 1 307 -6 863 249 158 51 chr12 143568557 143569107 -217348 + HAL1 LINE L1 1836 2458 -49 1670 177 3 14 chr12 143569107 143569401 -217054 - AluJb SINE Alu -21 291 1 863 249 158 51 chr12 143569401 143569457 -216998 + HAL1 LINE L1 2458 2507 0 2360 62 0 0 chr12 143569515 143569805 -216650 + AluY SINE Alu 5 294 -17 674 222 7 0 chr12 143570244 143570379 -216076 - AluSc SINE Alu -55 254 119 2128 113 3 10 chr12 143570407 143570718 -215737 - AluSx SINE Alu -3 309 1 298 125 36 0 chr12 143570719 143570775 -215680 - AluJb SINE Alu -160 142 85 2131 116 0 10 chr12 143570775 143571086 -215369 - AluSx SINE Alu -4 308 1 2223 99 0 7 chr12 143573474 143573776 -212679 - AluSc SINE Alu -9 300 1 1756 85 0 25 chr12 143573776 143573889 -212566 - AluSx SINE Alu -67 245 131 2139 141 0 0 chr12 143573889 143574201 -212254 - AluSx SINE Alu 0 312 1 1756 85 0 25 chr12 143574201 143574323 -212132 - AluSx SINE Alu -181 131 16 2203 82 0 0 chr12 143574330 143574621 -211834 - AluY SINE Alu -5 306 16 2281 63 10 26 chr12 143576873 143577175 -209280 + AluY SINE Alu 1 297 -14 1882 155 0 0 chr12 143577870 143578161 -208294 + AluJb SINE Alu 1 291 -21 306 0 0 0 chr12 143578162 143578196 -208259 + (TA)n Simple_repeat Simple_repeat 2 35 0 1870 90 0 0 chr12 143578944 143579215 -207240 + AluY SINE Alu 37 307 0 2023 108 28 0 chr12 143579273 143579561 -206894 + AluSx SINE Alu 1 296 -16 1790 160 3 10 chr12 143579912 143580218 -206237 + AluJb SINE Alu 1 304 -8 2065 133 3 0 chr12 143582253 143582562 -203893 - AluSq SINE Alu -3 310 1 2446 45 0 26 chr12 143582697 143583005 -203450 + AluY SINE Alu 1 300 -11 1995 140 27 9 chr12 143583067 143583403 -203052 - LTR3b LTR ERVK 0 500 159 1089 141 0 0 chr12 143583616 143583779 -202676 - AluJb SINE Alu -29 283 121 2107 112 3 16 chr12 143583780 143584093 -202362 - AluSg SINE Alu -1 309 1 22 0 0 0 chr12 143584304 143584326 -202129 + AT_rich Low_complexity Low_complexity 1 22 0 2077 103 0 7 chr12 143584334 143584624 -201831 + AluSx SINE Alu 1 288 -24 2165 68 0 7 chr12 143584683 143584978 -201477 + AluY SINE Alu 1 293 -18 1970 79 75 4 chr12 143585305 143585584 -200871 - AluSq SINE Alu -14 299 1 995 144 0 12 chr12 143585812 143585979 -200476 - AluSg/x SINE Alu -1 309 145 2044 118 7 10 chr12 143587137 143587443 -199012 - AluSx SINE Alu -7 305 1 22 0 0 0 chr12 143588258 143588280 -198175 + AT_rich Low_complexity Low_complexity 1 22 0 643 272 142 53 chr12 143591642 143591965 -194490 - MER63B DNA MER1_type -84 352 1 263 176 135 0 chr12 143591979 143592053 -194402 + MLT1H1 LTR MaLR 466 549 -6 190 321 189 0 chr12 143592275 143592381 -194074 + L2 LINE L2 3119 3244 -69 1387 227 30 0 chr12 143593519 143593819 -192636 - MLT1B LTR MaLR -7 383 75 536 169 0 0 chr12 143593804 143593893 -192562 + U6 snRNA snRNA 17 105 -2 * 286 179 18 0 chr12 143593885 143593941 -192514 - MLT1B LTR MaLR -300 90 34 * 1368 239 92 46 chr12 143594050 143594252 -192203 + MLT1D LTR MaLR 2 193 -312 2504 40 0 7 chr12 143594252 143594556 -191899 + AluY SINE Alu 1 302 -9 1368 239 92 46 chr12 143594556 143594829 -191626 + MLT1D LTR MaLR 193 499 -6 273 299 64 59 chr12 143595007 143595371 -191084 + L2 LINE L2 2274 3065 -248 247 280 291 24 chr12 143595372 143595427 -191028 + L2 LINE L2 2942 2981 -332 1867 148 26 3 chr12 143595427 143595731 -190724 - AluJb SINE Alu 0 312 2 247 280 291 24 chr12 143595731 143595964 -190491 + L2 LINE L2 2981 3307 -6 1362 233 93 5 chr12 143596124 143596520 -189935 + L1MB7 LINE L1 5739 6175 -9 1265 176 46 0 chr12 143596645 143596906 -189549 - L1MA3 LINE L1 0 6305 6033 720 239 117 37 chr12 143596968 143597290 -189165 - L1MD2 LINE L1 -67 6099 5766 1749 214 72 67 chr12 143597420 143597750 -188705 - L1MD2 LINE L1 -448 5794 5467 2188 122 0 0 chr12 143597750 143598053 -188402 - AluSx SINE Alu -9 303 1 1749 214 72 67 chr12 143598053 143598192 -188263 - L1MD2 LINE L1 -775 5467 5330 2091 130 3 0 chr12 143598192 143598484 -187971 - AluSx SINE Alu -17 295 3 1749 214 72 67 chr12 143598484 143598634 -187821 - L1MD2 LINE L1 -912 5330 5182 2122 99 3 10 chr12 143598634 143598927 -187528 - AluSc SINE Alu -18 291 1 2048 80 42 7 chr12 143598927 143599212 -187243 - AluSx SINE Alu -15 297 3 1749 214 72 67 chr12 143599212 143599390 -187065 - L1MD2 LINE L1 -1345 4897 4973 485 285 120 48 chr12 143599385 143599829 -186626 + L1M4 LINE L1 4206 4674 -1472 * 205 308 154 31 chr12 143601110 143601240 -185215 - L2 LINE L2 -281 3032 2887 822 144 0 15 chr12 143601348 143601480 -184975 - FLAM_C SINE Alu 0 133 4 309 264 182 32 chr12 143601725 143601945 -184510 - MIR SINE MIR -1 261 9 2029 151 3 0 chr12 143605156 143605468 -180987 - AluSq SINE Alu 0 313 1 2297 74 0 7 chr12 143605469 143605765 -180690 - AluSq SINE Alu -19 294 1 2203 80 0 13 chr12 143606331 143606630 -179825 - AluSx SINE Alu -17 295 1 25 0 0 0 chr12 143606631 143606656 -179799 + AT_rich Low_complexity Low_complexity 1 25 0 192 351 107 0 chr12 143606716 143606847 -179608 + L2 LINE L2 3169 3313 0 2434 58 0 13 chr12 143607391 143607700 -178755 - AluY SINE Alu -6 305 1 2193 108 0 0 chr12 143607848 143608144 -178311 - AluSp SINE Alu -17 296 1 2316 98 0 0 chr12 143608145 143608451 -178004 - AluSx SINE Alu -6 306 1 1391 189 12 64 chr12 143608896 143609079 -177376 - AluJo SINE Alu -1 311 151 2137 87 14 0 chr12 143609079 143609367 -177088 - AluSp SINE Alu -17 296 5 1391 189 12 64 chr12 143609367 143609511 -176944 - AluJo SINE Alu -161 151 1 2340 78 0 0 chr12 143609728 143610021 -176434 - AluY SINE Alu -18 293 1 1852 139 17 3 chr12 143610715 143611009 -175446 + AluSg SINE Alu 1 298 -12 2170 114 0 0 chr12 143613047 143613354 -173101 - AluY SINE Alu -4 307 1 1692 166 7 17 chr12 143613356 143613657 -172798 - AluJb SINE Alu -14 298 1 2230 97 3 0 chr12 143614948 143615247 -171208 + AluSp SINE Alu 2 301 -12 2514 56 0 0 chr12 143615247 143615549 -170906 + AluY SINE Alu 1 302 -9 4160 136 240 9 chr12 143616143 143617032 -169423 - Tigger1 DNA MER2_type -7 2411 1318 25 0 0 0 chr12 143617032 143617057 -169398 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr12 143617057 143617078 -169377 + (TG)n Simple_repeat Simple_repeat 2 22 0 1152 177 12 138 chr12 143617079 143617406 -169049 - AluJo SINE Alu -16 286 1 1973 112 49 3 chr12 143617509 143617794 -168661 + AluSx SINE Alu 1 298 -14 7583 53 69 2 chr12 143617957 143618249 -168206 - LTR13 LTR ERVK 0 1007 736 186 43 0 0 chr12 143618249 143618272 -168183 + (GA)n Simple_repeat Simple_repeat 2 24 0 7583 53 69 2 chr12 143618272 143618923 -167532 - LTR13 LTR ERVK -271 736 1 2101 117 0 10 chr12 143619008 143619308 -167147 - AluSx SINE Alu -15 297 1 7676 70 11 39 chr12 143619385 143620421 -166034 + LTR13 LTR ERVK 1 1007 0 241 310 31 8 chr12 143621400 143621529 -164926 + (CGGGG)n Simple_repeat Simple_repeat 2 133 0 475 300 124 26 chr12 143625962 143626168 -160287 - MER82 DNA MER2_type -83 570 330 2261 64 3 0 chr12 143626168 143626497 -159958 - AluSp SINE Alu 0 330 1 475 300 124 26 chr12 143626497 143626556 -159899 - MER82 DNA MER2_type -323 330 278 1185 173 21 21 chr12 143626615 143626858 -159597 - AluJo SINE Alu -1 311 69 813 273 23 16 chr12 143626925 143627181 -159274 - MER82 DNA MER2_type -382 271 14 1959 151 7 0 chr12 143628288 143628592 -157863 - AluJb SINE Alu -6 306 1 26 30 0 0 chr12 143628631 143628664 -157791 + AT_rich Low_complexity Low_complexity 1 33 0 2115 128 0 0 chr12 143628752 143629057 -157398 - AluSg SINE Alu -5 305 1 1984 146 0 22 chr12 143629230 143629545 -156910 + AluSx SINE Alu 1 308 -4 1425 165 55 22 chr12 143629620 143629893 -156562 - AluJo SINE Alu -22 290 9 308 286 79 14 chr12 143631501 143631544 -154911 + MIR SINE MIR 78 117 -145 2167 95 0 3 chr12 143631544 143631829 -154626 - AluSq SINE Alu -16 297 14 308 286 79 14 chr12 143631829 143631925 -154530 + MIR SINE MIR 117 226 -36 2117 126 10 0 chr12 143633482 143633791 -152664 - AluSx SINE Alu 0 312 1 317 82 0 0 chr12 143633791 143633840 -152615 - AluSq/x SINE Alu -167 135 87 1238 190 5 5 chr12 143633840 143634061 -152394 - AluJo SINE Alu -91 221 1 2225 96 0 0 chr12 143634063 143634354 -152101 - AluSc SINE Alu -8 301 11 887 118 0 22 chr12 143634914 143635050 -151405 - FLAM_C SINE Alu -2 141 9 243 197 33 0 chr12 143636693 143636754 -149701 - MER5A DNA MER1_type -80 109 47 2281 67 6 19 chr12 143638190 143638505 -147950 - AluY SINE Alu 0 311 1 380 283 122 22 chr12 143638629 143638809 -147646 + HsTC2c DNA Tc2 166 363 -366 2261 63 0 11 chr12 143638915 143639221 -147234 - AluY SINE Alu 0 303 1 1879 118 10 7 chr12 143639231 143639519 -146936 - AluSx SINE Alu -23 289 1 286 75 0 0 chr12 143639537 143639577 -146878 - Alu SINE Alu -263 40 1 450 276 217 0 chr12 143639630 143639851 -146604 + HsTC2c DNA Tc2 457 725 -4 219 256 33 0 chr12 143640305 143640395 -146060 + (CTGGGG)n Simple_repeat Simple_repeat 1 93 0 2347 88 0 0 chr12 143642019 143642316 -144139 + AluSg SINE Alu 1 297 -13 1530 186 14 24 chr12 143643658 143643948 -142507 + AluJb SINE Alu 1 287 -25 282 283 139 16 chr12 143644108 143644295 -142160 + MIR SINE MIR 20 229 -33 398 226 40 20 chr12 143644333 143644640 -141815 + (TG)n Simple_repeat Simple_repeat 1 313 0 2205 86 7 0 chr12 143645397 143645687 -140768 + AluSg SINE Alu 2 293 -17 1505 167 102 0 chr12 143646058 143646333 -140122 - AluSg SINE Alu -7 303 1 2148 110 3 0 chr12 143646367 143646676 -139779 - AluSx SINE Alu -2 310 1 196 250 47 16 chr12 143647453 143647517 -138938 - MIR3 SINE MIR -138 70 5 1823 125 37 0 chr12 143647696 143647991 -138464 - AluY SINE Alu -5 306 1 590 142 12 123 chr12 143647993 143648155 -138300 - FRAM SINE Alu -17 159 16 205 326 34 7 chr12 143649030 143649177 -137278 + (TG)n Simple_repeat Simple_repeat 1 151 0 * 309 308 19 19 chr12 143649142 143649301 -137154 + (CGTG)n Simple_repeat Simple_repeat 1 159 0 * 329 274 24 18 chr12 143649202 143649366 -137089 + (TG)n Simple_repeat Simple_repeat 1 165 0 298 279 35 17 chr12 143649391 143649563 -136892 + (TG)n Simple_repeat Simple_repeat 1 175 0 2218 76 7 0 chr12 143649892 143650183 -136272 + AluSp SINE Alu 1 293 -20 1764 122 4 4 chr12 143650355 143650618 -135837 - AluSc SINE Alu -8 301 39 25 0 0 0 chr12 143650618 143650643 -135812 + AT_rich Low_complexity Low_complexity 1 25 0 1161 122 59 32 chr12 143650650 143650669 -135786 - AluJo SINE Alu 0 312 295 2353 55 10 13 chr12 143650669 143650978 -135477 - AluY SINE Alu -3 308 1 1161 122 59 32 chr12 143650978 143651179 -135276 - AluJo SINE Alu -17 295 86 268 148 0 0 chr12 143653542 143653596 -132859 + Alu SINE Alu 1 39 -264 505 158 0 0 chr12 143653598 143653680 -132775 + AluJ/FRAM SINE Alu 222 303 -9 775 175 136 0 chr12 143653680 143653834 -132621 + MER46A DNA MER2_type 44 218 -18 2238 92 0 0 chr12 143656706 143657009 -129446 - AluSx SINE Alu -9 303 1 2247 81 0 0 chr12 143658336 143658631 -127824 + AluSx SINE Alu 1 295 -17 2038 105 7 0 chr12 143659017 143659313 -127142 - AluSx SINE Alu -14 298 1 1566 184 30 84 chr12 143660589 143660992 -125463 + MLT1B LTR MaLR 9 389 -1 656 124 95 0 chr12 143660994 143661131 -125324 - L1MEc LINE L1 -3568 2647 2498 247 229 0 24 chr12 143661171 143661254 -125201 - L1MB3 LINE L1 -16 6167 6087 4112 139 31 57 chr12 143661255 143661518 -124937 - L1MA4 LINE L1 -281 6019 5751 2132 122 0 0 chr12 143661518 143661822 -124633 - AluSx SINE Alu -8 304 1 4112 139 31 57 chr12 143661822 143662477 -123978 - L1MA4 LINE L1 -549 5751 5108 885 193 97 14 chr12 143662454 143662744 -123711 - L1MEc LINE L1 -3698 2517 2204 * 422 271 0 0 chr12 143662744 143662829 -123626 + AluJ/FLAM SINE Alu 2 86 -226 180 0 0 0 chr12 143662848 143662868 -123587 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 721 133 19 0 chr12 143662877 143662982 -123473 + FRAM SINE Alu 48 154 -22 507 272 70 58 chr12 143662982 143663496 -122959 - L1MEc LINE L1 -4143 2253 1734 390 243 71 93 chr12 143663511 143663608 -122847 - L1MEc LINE L1 -4437 2170 2072 2205 93 0 0 chr12 143663608 143663908 -122547 - AluY SINE Alu -11 300 1 390 243 71 93 chr12 143663908 143664036 -122419 - L1MEc LINE L1 -4535 2072 1950 342 222 49 0 chr12 143664630 143664711 -121744 - HAL1 LINE L1 -921 1586 1502 1664 164 35 0 chr12 143664840 143665127 -121328 - AluJb SINE Alu -15 297 1 21 36 0 0 chr12 143665200 143665228 -121227 + AT_rich Low_complexity Low_complexity 1 28 0 1993 90 11 0 chr12 143665263 143665531 -120924 + AluSx SINE Alu 1 271 -41 21 0 0 0 chr12 143665639 143665660 -120795 + GC_rich Low_complexity Low_complexity 1 21 0 745 217 72 42 chr12 143666056 143666319 -120136 - AluSg SINE Alu -38 272 2 2285 93 3 3 chr12 143666549 143666861 -119594 + AluSx SINE Alu 1 312 0 906 183 78 0 chr12 143666985 143667176 -119279 - AluJb SINE Alu -21 291 86 431 221 62 9 chr12 143667420 143667533 -118922 - MER58 DNA MER1_type -2156 264 146 1196 141 50 32 chr12 143668649 143668869 -117586 + AluSg/x SINE Alu 86 309 -3 718 193 55 14 chr12 143669010 143669155 -117300 + AluJb SINE Alu 157 307 -5 296 120 0 0 chr12 143669558 143669608 -116847 - Alu SINE Alu 0 308 259 1943 105 21 7 chr12 143669714 143669999 -116456 + AluSg SINE Alu 14 302 -8 1084 139 146 101 chr12 143670001 143670289 -116166 + AluJo SINE Alu 2 302 0 304 208 0 56 chr12 143670289 143670351 -116104 - L1MEc LINE L1 -4498 1928 1869 1758 143 0 17 chr12 143670351 143670645 -115810 + AluSx SINE Alu 1 289 -23 248 192 46 23 chr12 143670692 143670822 -115633 + (TTGTG)n Simple_repeat Simple_repeat 5 137 0 685 162 17 0 chr12 143671016 143671138 -115317 - THE1B LTR MaLR -244 131 3 298 242 295 0 chr12 143671142 143671291 -115164 - L2 LINE L2 -557 2757 2565 301 286 107 27 chr12 143671326 143671438 -115017 - L2 LINE L2 -5 3308 3188 692 177 9 0 chr12 143671460 143671573 -114882 - MER81 DNA DNA 0 114 1 214 230 130 30 chr12 143671650 143671750 -114705 - MIR3 SINE MIR -44 164 55 1252 148 88 19 chr12 143672199 143672307 -114148 - L1MCa LINE L1 -4105 2321 2222 1878 145 0 10 chr12 143672307 143672603 -113852 - AluSx SINE Alu -19 293 1 1252 148 88 19 chr12 143672603 143672757 -113698 - L1MCa LINE L1 -4204 2222 2041 1177 99 12 0 chr12 143672779 143672935 -113520 - AluSg/x SINE Alu -23 289 131 2064 102 26 3 chr12 143672935 143673238 -113217 - AluSg SINE Alu 0 310 1 2049 111 0 14 chr12 143673243 143673540 -112915 - AluSx SINE Alu -19 293 1 265 85 128 0 chr12 143673540 143673587 -112868 - L1MCa LINE L1 -4425 2001 1949 664 244 17 28 chr12 143673587 143673763 -112692 + AluJo SINE Alu 121 294 -18 4213 158 82 37 chr12 143673765 143674080 -112375 - L1MCa LINE L1 -4500 1926 1627 3297 182 79 27 chr12 143674080 143674224 -112231 - MER44D DNA MER2_type -1882 605 470 1613 169 6 31 chr12 143674224 143674544 -111911 - AluJo SINE Alu 0 312 1 3297 182 79 27 chr12 143674544 143675096 -111359 - MER44D DNA MER2_type -2017 470 1 4213 158 82 37 chr12 143675096 143675524 -110931 - L1MCa LINE L1 -4799 1627 1220 2267 70 3 0 chr12 143675524 143675811 -110644 - AluY SINE Alu -23 288 1 4213 158 82 37 chr12 143675811 143676260 -110195 - L1MCa LINE L1 -5206 1220 592 470 221 0 0 chr12 143676258 143676344 -110111 - L1MCa LINE L1 -6322 104 19 * 1875 112 0 71 chr12 143676522 143676844 -109611 + AluSx SINE Alu 11 309 -3 1173 146 57 60 chr12 143677092 143677373 -109082 - L1MA6 LINE L1 0 6300 6021 844 206 17 71 chr12 143677403 143677641 -108814 - AluJo SINE Alu -87 225 1 537 178 206 28 chr12 143678227 143678407 -108048 - L1MC4 LINE L1 -15 8027 7816 2191 98 0 0 chr12 143678423 143678719 -107736 - AluY SINE Alu -15 296 1 953 186 45 0 chr12 143678867 143679044 -107411 - L1PA15 LINE L1 -2 6163 5979 432 174 183 0 chr12 143682591 143682706 -103749 + MER58B DNA MER1_type 206 341 0 649 87 43 0 chr12 143683014 143683106 -103349 + MER30B DNA MER1_type 6 101 -89 466 95 16 0 chr12 143683103 143683166 -103289 - MER30B DNA MER1_type -122 68 5 * 423 293 197 10 chr12 143683664 143683862 -102593 + L1MEc LINE L1 1582 1816 -4580 265 229 221 42 chr12 143683864 143683959 -102496 + MER58 DNA MER1_type 1 116 -99 1272 85 0 0 chr12 143683999 143684163 -102292 + AluY SINE Alu 132 295 -16 252 206 59 29 chr12 143684360 143684428 -102027 + L1ME3A LINE L1 6051 6120 -50 1071 209 61 78 chr12 143684454 143684739 -101716 + HsTC2 DNA Tc2 231 510 -1388 1783 137 0 41 chr12 143684739 143685053 -101402 + AluSx SINE Alu 12 312 0 1071 209 61 78 chr12 143685053 143685126 -101329 + HsTC2 DNA Tc2 510 583 -1315 1459 178 11 21 chr12 143685304 143685585 -100870 + AluJo SINE Alu 24 301 -11 249 284 88 20 chr12 143685599 143685701 -100754 + HsTC2 DNA Tc2 1518 1626 -272 26 30 0 0 chr12 143685902 143685935 -100520 + AT_rich Low_complexity Low_complexity 1 33 0 228 305 110 45 chr12 143686031 143686277 -100178 + L2 LINE L2 2691 2952 -362 23 68 0 0 chr12 143686446 143686490 -99965 + AT_rich Low_complexity Low_complexity 1 44 0 1766 180 101 19 chr12 143686499 143686916 -99539 - MLT1E2 LTR MaLR 0 626 176 1926 118 20 3 chr12 143687703 143687999 -98456 - AluSx SINE Alu -11 301 1 1156 126 50 20 chr12 143688348 143688547 -97908 + AluSx SINE Alu 1 205 -107 216 241 21 120 chr12 143688891 143689082 -97373 + MER5B DNA MER1_type 7 178 0 488 250 121 0 chr12 143689276 143689400 -97055 + AluJo SINE Alu 93 231 -81 472 326 61 17 chr12 143689409 143689639 -96816 - L3 LINE CR1 -161 1416 1177 393 304 8 32 chr12 143689641 143689766 -96689 + L2 LINE L2 3192 3313 0 226 306 149 22 chr12 143689921 143690055 -96400 - L3 LINE CR1 -867 710 560 313 376 143 16 chr12 143690272 143690644 -95811 - L2 LINE L2 -405 2909 2491 1250 180 15 94 chr12 143690673 143690834 -95621 + AluJo SINE Alu 1 124 -188 2029 152 3 0 chr12 143690834 143691144 -95311 + AluJb SINE Alu 1 311 -1 1250 180 15 94 chr12 143691144 143691310 -95145 + AluJo SINE Alu 124 302 -10 24 0 0 0 chr12 143691340 143691364 -95091 + AT_rich Low_complexity Low_complexity 1 24 0 483 198 31 0 chr12 143691366 143691462 -94993 - MIR SINE MIR -25 237 139 408 237 15 30 chr12 143691463 143691594 -94861 - L1MEc LINE L1 -6257 139 11 324 308 105 0 chr12 143691606 143691739 -94716 - L1M LINE L1 -2380 5428 5282 2855 231 67 38 chr12 143691796 143693058 -93397 + L1M4 LINE L1 380 1604 -4643 2216 69 52 7 chr12 143693058 143693346 -93109 + AluSx SINE Alu 1 301 -11 2855 231 67 38 chr12 143693346 143693627 -92828 + L1M4 LINE L1 1604 5577 -670 2032 200 52 44 chr12 143696279 143696592 -89863 - MLT1D LTR MaLR 0 505 185 2198 96 0 45 chr12 143696592 143696905 -89550 - AluSx SINE Alu -13 299 1 2032 200 52 44 chr12 143696905 143697092 -89363 - MLT1D LTR MaLR -320 185 1 351 182 17 0 chr12 143697780 143697858 -88597 + L1ME2 LINE L1 6083 6166 0 266 29 0 0 chr12 143698396 143698431 -88024 - AluSp/q SINE Alu -11 292 258 1329 95 0 0 chr12 143698485 143698654 -87801 + AluSq SINE Alu 132 300 -13 2337 89 3 3 chr12 143701401 143701704 -84751 - AluSp SINE Alu -10 303 1 891 110 193 0 chr12 143702108 143702253 -84202 - AluSc SINE Alu -6 303 131 2086 128 0 6 chr12 143702261 143702574 -83881 - AluSx SINE Alu -1 311 1 680 277 173 36 chr12 143702768 143703577 -82878 - HAL1 LINE L1 -194 2313 1394 2245 71 37 14 chr12 143703659 143703954 -82501 + AluSg1 SINE Alu 1 302 -7 1706 153 12 47 chr12 143704044 143704079 -82376 - AluSx SINE Alu -3 309 274 183 80 0 0 chr12 143704079 143704104 -82351 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1706 153 12 47 chr12 143704104 143704388 -82067 - AluSx SINE Alu -38 274 1 2218 88 44 0 chr12 143704418 143704713 -81742 - AluY SINE Alu -3 308 1 21 0 0 0 chr12 143704751 143704772 -81683 + AT_rich Low_complexity Low_complexity 1 21 0 401 202 67 134 chr12 143705464 143705618 -80837 - L1MC5 LINE L1 -184 7777 7645 536 179 16 49 chr12 143705618 143705741 -80714 + FLAM_A SINE Alu 4 122 -11 401 202 67 134 chr12 143705741 143705839 -80616 - L1MC5 LINE L1 -316 7645 7542 297 320 34 35 chr12 143706347 143706715 -79740 - L1M2 LINE L1 -915 1783 1231 342 350 140 4 chr12 143706730 143706973 -79482 - L1M4 LINE L1 -1140 5006 4731 234 0 0 0 chr12 143707300 143707326 -79129 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1266 201 74 14 chr12 143707334 143707618 -78837 - AluJo SINE Alu -11 301 1 337 280 0 0 chr12 143707727 143707802 -78653 - L2 LINE L2 -21 3292 3218 1189 103 134 0 chr12 143708321 143708515 -77940 - L1PA10 LINE L1 -10 6158 5939 239 214 73 56 chr12 143710916 143711094 -75361 - L1M4 LINE L1 -3235 2911 2731 2284 104 3 0 chr12 143711501 143711799 -74656 - AluSx SINE Alu -13 299 1 1567 184 30 26 chr12 143711819 143712123 -74332 - AluJo SINE Alu -7 305 1 207 297 144 0 chr12 143712543 143712661 -73794 - L2 LINE L2 -969 2345 2211 254 307 104 51 chr12 143712742 143712820 -73635 - L2 LINE L2 -1254 2060 1988 2213 106 17 0 chr12 143712820 143713113 -73342 + AluSc SINE Alu 1 298 -11 254 307 104 51 chr12 143713113 143713428 -73027 - L2 LINE L2 -1326 1988 1646 437 303 105 53 chr12 143713863 143714368 -72087 - L2 LINE L2 -2550 764 234 2298 97 0 0 chr12 143714659 143714947 -71508 + AluY SINE Alu 1 288 -23 1257 161 88 0 chr12 143715067 143715284 -71171 + MER46A DNA MER2_type 1 236 0 365 260 10 19 chr12 143715323 143715427 -71028 + L2 LINE L2 2601 2703 -611 216 0 0 0 chr12 143715427 143715451 -71004 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2184 93 33 3 chr12 143715646 143715946 -70509 - AluSp SINE Alu -4 309 1 301 248 214 0 chr12 143715966 143716111 -70344 - L1MC/D LINE L1 -1954 5854 5679 252 299 198 6 chr12 143716349 143716506 -69949 + L2 LINE L2 3112 3298 -15 634 170 28 0 chr12 143716611 143716717 -69738 + FLAM_A SINE Alu 4 112 -30 1588 179 27 7 chr12 143717049 143717345 -69110 + AluJb SINE Alu 5 306 -6 2242 102 0 0 chr12 143717870 143718155 -68300 + AluSc SINE Alu 1 285 -24 2189 90 37 13 chr12 143719120 143719420 -67035 - AluSq SINE Alu -6 307 1 210 300 0 0 chr12 143719528 143719578 -66877 + MIR SINE MIR 207 256 -6 574 160 0 43 chr12 143719600 143719788 -66667 + (TG)n Simple_repeat Simple_repeat 1 180 0 200 231 17 17 chr12 143719812 143719929 -66526 + (TG)n Simple_repeat Simple_repeat 2 118 0 369 244 6 12 chr12 143719982 143720150 -66305 + (TG)n Simple_repeat Simple_repeat 1 167 0 478 210 0 32 chr12 143720183 143720369 -66086 + (TG)n Simple_repeat Simple_repeat 1 180 0 233 263 6 17 chr12 143720385 143720564 -65891 + (TG)n Simple_repeat Simple_repeat 1 177 0 277 244 7 7 chr12 143720620 143720755 -65700 + (TG)n Simple_repeat Simple_repeat 1 135 0 291 255 10 20 chr12 143720768 143720866 -65589 + (TG)n Simple_repeat Simple_repeat 1 97 0 324 222 0 20 chr12 143720877 143721030 -65425 + (TG)n Simple_repeat Simple_repeat 1 150 0 453 261 0 0 chr12 143721047 143721227 -65228 + (TG)n Simple_repeat Simple_repeat 1 180 0 3381 111 39 28 chr12 143722024 143722566 -63889 - LTR14 LTR ERVK 0 548 1 682 67 0 0 chr12 143723720 143723809 -62646 + AluSp/q SINE Alu 209 297 -16 427 156 94 0 chr12 143723871 143723967 -62488 - MER67C LTR ERV1 -2 708 604 1936 153 0 7 chr12 143723969 143724264 -62191 + AluJb SINE Alu 1 293 -19 2404 88 0 7 chr12 143724267 143724572 -61883 + AluSq SINE Alu 1 303 -10 1810 100 96 0 chr12 143726317 143726566 -59889 + AluSx SINE Alu 1 273 -39 418 143 0 0 chr12 143727300 143727370 -59085 + Alu SINE Alu 235 304 -5 2494 161 31 2 chr12 143727370 143727785 -58670 - MER41C LTR ERV1 -127 427 1 1299 226 152 22 chr12 143727785 143728187 -58268 - MER76 LTR ERV -194 494 41 2444 76 0 0 chr12 143728201 143728503 -57952 - AluSc SINE Alu -7 302 1 1350 181 40 31 chr12 143728516 143728842 -57613 - L1M4 LINE L1 -1712 4434 4106 236 162 0 0 chr12 143728873 143728910 -57545 - L1M4 LINE L1 -2004 4142 4106 1567 230 70 3 chr12 143729113 143729487 -56968 - L1M4 LINE L1 -2006 4140 3742 421 196 49 10 chr12 143729484 143729586 -56869 - L1MA10 LINE L1 0 6334 6229 * 953 206 19 82 chr12 143729616 143729883 -56572 - L1M4 LINE L1 -2406 3740 3491 1168 161 0 0 chr12 143729888 143730062 -56393 - AluJb SINE Alu -19 293 120 1037 87 55 115 chr12 143730062 143730280 -56175 - L1MA2 LINE L1 -4 6300 6096 2577 227 58 38 chr12 143730424 143731170 -55285 - L1ME1 LINE L1 -105 6455 5725 1835 102 12 99 chr12 143731170 143731504 -54951 - AluSx SINE Alu -7 305 1 2577 227 58 38 chr12 143731504 143731672 -54783 - L1ME1 LINE L1 -835 5725 5562 2095 145 0 0 chr12 143731672 143731983 -54472 - AluSx SINE Alu -1 311 1 2577 227 58 38 chr12 143731983 143732104 -54351 - L1ME1 LINE L1 -998 5562 5396 787 215 8 48 chr12 143732102 143732314 -54141 - L1ME1 LINE L1 -3698 2842 2640 * 2385 83 3 0 chr12 143732314 143732614 -53841 - AluSp SINE Alu -12 301 1 787 215 8 48 chr12 143732614 143732652 -53803 - L1ME1 LINE L1 -3900 2640 2602 1356 150 18 18 chr12 143732653 143732893 -53562 - AluJo SINE Alu 0 303 64 2111 146 3 0 chr12 143732915 143733217 -53238 - AluJb SINE Alu -7 305 3 1736 252 72 28 chr12 143733252 143734026 -52429 - L1ME1 LINE L1 -3963 2577 1770 25 0 0 0 chr12 143734326 143734351 -52104 + AT_rich Low_complexity Low_complexity 1 25 0 2384 100 0 0 chr12 143734932 143735233 -51222 + AluSc SINE Alu 1 301 -8 2221 118 0 3 chr12 143735988 143736284 -50171 - AluSx SINE Alu -17 295 1 21 36 0 0 chr12 143736298 143736326 -50129 + AT_rich Low_complexity Low_complexity 1 28 0 1608 211 91 30 chr12 143737275 143737715 -48740 - MLT1C LTR MaLR 0 467 1 2314 108 7 3 chr12 143738363 143738668 -47787 + AluSq SINE Alu 1 306 -7 919 226 80 29 chr12 143741601 143741840 -44615 + MIR SINE MIR 12 262 0 588 219 41 14 chr12 143742605 143742751 -43704 + MIR SINE MIR 113 262 0 470 282 140 17 chr12 143742754 143743176 -43279 + L1ME4a LINE L1 5648 6121 0 1489 178 58 7 chr12 143743222 143743497 -42958 + AluJo SINE Alu 1 289 -23 2260 87 0 0 chr12 143743535 143743811 -42644 + AluSx SINE Alu 1 276 -36 652 200 41 14 chr12 143743828 143743973 -42482 + L1M4 LINE L1 4254 4402 -1744 1155 152 80 6 chr12 143743975 143744294 -42161 - LTR46 LTR ERV1 -1 459 1 858 182 21 78 chr12 143744296 143744538 -41917 + L1M4 LINE L1 4348 4575 -1571 2415 71 3 7 chr12 143744538 143744847 -41608 - AluY SINE Alu -3 308 1 863 180 47 0 chr12 143745007 143745218 -41237 + L1MB4 LINE L1 1460 1680 -5170 555 202 17 17 chr12 143745221 143745340 -41115 - Tigger1 DNA MER2_type 0 2418 2300 3147 156 7 82 chr12 143745341 143746093 -40362 + L1M4c LINE L1 1 808 -6041 2111 112 21 0 chr12 143746093 143746379 -40076 + AluSx SINE Alu 1 292 -20 3147 156 7 82 chr12 143746379 143746415 -40040 + L1M4c LINE L1 808 845 -6004 1463 158 22 0 chr12 143746415 143746643 -39812 + AluJb SINE Alu 1 233 -79 3147 156 7 82 chr12 143746643 143746836 -39619 + L1M4c LINE L1 845 1728 -5121 1248 122 20 57 chr12 143746829 143747076 -39379 + L1M4c LINE L1 2474 2711 -4138 * 3986 127 38 2 chr12 143747076 143747675 -38780 - Tigger1 DNA MER2_type -665 1753 1133 738 187 53 23 chr12 143747675 143747846 -38609 + L1MB4 LINE L1 2140 2315 -4535 2378 65 17 0 chr12 143747874 143748164 -38291 + AluY SINE Alu 1 295 -16 517 232 22 14 chr12 143748165 143748303 -38152 + L1MB4 LINE L1 2475 2613 -4237 * 2963 203 51 26 chr12 143748284 143748730 -37725 + L1MB4 LINE L1 5320 5788 -1092 754 200 0 15 chr12 143748730 143748865 -37590 + FLAM_C SINE Alu 1 133 0 2963 203 51 26 chr12 143748865 143749264 -37191 + L1MB4 LINE L1 5788 6176 -704 887 179 113 15 chr12 143749293 143749488 -36967 - LTR47A LTR ERVL 0 452 239 3480 164 48 14 chr12 143749715 143750375 -36080 + L1MB4 LINE L1 6194 6876 -6 910 142 7 14 chr12 143750614 143750755 -35700 + AluJo SINE Alu 3 142 -170 200 146 73 0 chr12 143750755 143750810 -35645 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 914 164 0 0 chr12 143750812 143750946 -35509 + AluJo SINE Alu 149 282 -30 508 234 86 35 chr12 143750971 143751168 -35287 + L1M4c LINE L1 2933 3139 -3709 441 259 95 13 chr12 143751230 143751388 -35067 + MLT1J2 LTR MaLR 1 171 -279 1070 219 134 8 chr12 143751490 143751821 -34634 + LTR37A LTR ERV1 19 398 -28 1896 151 3 26 chr12 143751821 143752132 -34323 - AluJb SINE Alu -8 304 1 1070 219 134 8 chr12 143752132 143752151 -34304 + LTR37A LTR ERV1 398 413 -13 1745 182 78 72 chr12 143752352 143752424 -34031 - L1MB8 LINE L1 -17 6161 6091 2363 85 0 19 chr12 143752424 143752741 -33714 + AluY SINE Alu 1 311 0 1745 182 78 72 chr12 143752741 143752787 -33668 - L1MB8 LINE L1 -87 6091 6047 1990 114 39 0 chr12 143752787 143752913 -33542 + AluSx SINE Alu 1 121 -191 333 0 0 0 chr12 143752913 143752950 -33505 + (CA)n Simple_repeat Simple_repeat 2 38 0 1990 114 39 0 chr12 143752950 143753104 -33351 + AluSx SINE Alu 121 292 -20 1745 182 78 72 chr12 143753104 143753470 -32985 - L1MB8 LINE L1 -131 6047 5670 990 163 12 30 chr12 143753470 143753636 -32819 - FRAM SINE Alu -1 165 3 1745 182 78 72 chr12 143753636 143753661 -32794 - L1MB8 LINE L1 -508 5670 5647 1425 211 4 0 chr12 143753677 143753943 -32512 + AluJo SINE Alu 33 299 -13 28 0 0 0 chr12 143753943 143753971 -32484 + AT_rich Low_complexity Low_complexity 1 28 0 959 146 13 13 chr12 143754014 143754172 -32283 - AluJo SINE Alu -50 262 105 1522 192 120 93 chr12 143754453 143754588 -31867 + Charlie1 DNA MER1_type 1422 1552 -1209 1696 174 14 3 chr12 143754588 143754881 -31574 - AluJo SINE Alu -14 298 3 1522 192 120 93 chr12 143754881 143754978 -31477 + Charlie1 DNA MER1_type 1552 1645 -1116 2433 62 0 3 chr12 143754978 143755270 -31185 - AluY SINE Alu -20 291 1 1522 192 120 93 chr12 143755270 143755561 -30894 + Charlie1 DNA MER1_type 1645 1960 -801 1118 322 29 106 chr12 143755572 143756808 -29647 + L1PB4 LINE L1 12 1135 -5714 2845 149 5 23 chr12 143756808 143757204 -29251 + MSTA LTR MaLR 1 390 -38 2020 120 7 7 chr12 143757204 143757503 -28952 - AluSc SINE Alu -10 299 1 2845 149 5 23 chr12 143757503 143757542 -28913 + MSTA LTR MaLR 390 428 0 1118 322 29 106 chr12 143757542 143757660 -28795 + L1PB4 LINE L1 1135 1261 -5588 * 15109 202 22 27 chr12 143757654 143761477 -24978 + L1PB4 LINE L1 1464 5305 -1553 2280 113 0 0 chr12 143761477 143761787 -24668 + AluSg SINE Alu 1 310 0 15109 202 22 27 chr12 143761787 143762613 -23842 + L1PB4 LINE L1 5305 6134 -724 1710 82 3 78 chr12 143762613 143762907 -23548 + AluSx SINE Alu 1 272 -40 15109 202 22 27 chr12 143762907 143762976 -23479 + L1PB4 LINE L1 6134 6202 -656 2546 48 0 10 chr12 143762976 143763289 -23166 + AluY SINE Alu 1 310 -1 2242 104 16 0 chr12 143763291 143763599 -22856 + AluSp SINE Alu 1 313 0 15109 202 22 27 chr12 143763599 143764250 -22205 + L1PB4 LINE L1 6203 6851 -7 1487 164 335 6 chr12 143764270 143764751 -21704 + Charlie1 DNA MER1_type 1951 2589 -172 1838 154 58 15 chr12 143766487 143766812 -19643 + MER1B DNA MER1_type 1 339 0 1227 101 0 0 chr12 143766943 143767102 -19353 + AluSg/x SINE Alu 135 293 -17 248 345 52 17 chr12 143767117 143767291 -19164 - L2 LINE L2 -787 2527 2348 918 209 106 144 chr12 143767554 143767692 -18763 - MLT1A2 LTR MaLR 0 374 232 2097 103 20 17 chr12 143767692 143767994 -18461 - AluSc SINE Alu -6 303 1 918 209 106 144 chr12 143767994 143768195 -18260 - MLT1A2 LTR MaLR -142 232 70 1028 128 13 0 chr12 143768195 143768375 -18080 - AluSg/x SINE Alu 0 311 130 542 134 24 0 chr12 143768375 143768457 -17998 - MLT1A2 LTR MaLR -281 84 1 2237 103 3 3 chr12 143768497 143768797 -17658 + AluSx SINE Alu 7 306 -6 475 286 77 15 chr12 143768802 143769061 -17394 - L2 LINE L2 -235 3078 2804 496 317 18 35 chr12 143769565 143769792 -16663 - MIR SINE MIR -6 256 34 1928 130 34 17 chr12 143769974 143770267 -16188 - AluSx SINE Alu -14 298 1 840 176 114 0 chr12 143770271 143770447 -16008 + L1MB8 LINE L1 5732 5927 -251 354 272 45 73 chr12 143770450 143770696 -15759 - L1MC4a LINE L1 -1836 5972 5734 1770 168 3 3 chr12 143771794 143772086 -14369 - AluJo SINE Alu -20 292 1 260 250 241 17 chr12 143772252 143772368 -14087 + MER5A DNA MER1_type 41 182 -7 289 326 89 5 chr12 143772416 143772640 -13815 - L1MC4a LINE L1 -922 5224 4982 * 861 229 42 57 chr12 143772632 143772804 -13651 - L1MC4a LINE L1 -1604 4542 4376 2292 117 0 0 chr12 143772804 143773104 -13351 - AluSx SINE Alu -12 300 1 861 229 42 57 chr12 143773104 143773267 -13188 - L1MC4a LINE L1 -1770 4376 4212 365 247 106 55 chr12 143773348 143773400 -13055 - L1MC4a LINE L1 -2649 3497 3449 2158 108 0 10 chr12 143773400 143773697 -12758 - AluSc SINE Alu -15 294 1 365 247 106 55 chr12 143773697 143773879 -12576 - L1MC4a LINE L1 -2697 3449 3251 * 1909 142 35 0 chr12 143773868 143774185 -12270 - L1MC/D LINE L1 -661 5683 5356 2382 92 0 3 chr12 143774624 143774930 -11525 + AluY SINE Alu 1 305 -6 2182 120 0 0 chr12 143775697 143775997 -10458 - AluSx SINE Alu -12 300 1 2103 103 35 0 chr12 143776266 143776548 -9907 - AluY SINE Alu -19 292 1 896 203 13 0 chr12 143776772 143776930 -9525 + FRAM SINE Alu 1 156 -20 1259 184 93 91 chr12 143776936 143777300 -9155 - MLT1A1 LTR MaLR 0 365 1 662 321 98 41 chr12 143777902 143778413 -8042 - MLT1L LTR MaLR -72 543 4 1515 205 0 7 chr12 143779013 143779296 -7159 + AluJb SINE Alu 2 282 -30 2297 96 26 0 chr12 143779296 143779599 -6856 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 143779610 143779631 -6824 + AT_rich Low_complexity Low_complexity 1 21 0 2442 94 0 0 chr12 143779631 143779930 -6525 + AluSc SINE Alu 1 299 -10 26 50 0 0 chr12 143780550 143780590 -5865 + AT_rich Low_complexity Low_complexity 1 40 0 24102 29 6 1 chr12 143780626 143784138 -2317 - L1PA3 LINE L1 0 6155 2630 633 263 150 74 chr12 143784345 143785248 -1207 - HAL1 LINE L1 -113 2394 1351 392 297 27 0 chr12 143785251 143785362 -1093 + L2 LINE L2 3196 3309 -4